cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/rbm-c58-4334
title: Nude woman walking and carrying basket on head

description: Nude woman walking and carrying basket on head. This is plate 34, captioned "Walking and carrying a 15-lb. basket on head, hands raised" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.6075/j0474bvz
title: CIL:57541, Drosophila melanogaster, S2* Cells. In Cell Image Library

description: Nuclear mask produced with ImageJ Trackmate plugin with Cellpose segmentation, followed by custom ImageJ macro to match cell nuclei and cytoplasm.

Time-lapse acquisition:

-- Every 15 minutes for 2 hours (9 frames)
-- Every 30 minutes for 8 hours (17 frames)
-- Every 1 hour for 5 hours (6 frames)
description: Nuclear segmentation masks for individual cells in Dpt_100X_T2
description: Imaging mode: time lapse microscopy; point scanning confocal microscopy
Visualization methods: Object Masks
DOI: 10.5281/zenodo.13973249
title: Linked collectors and determiners for: New records for Albania based on taxa from the Prespa National Park.

description: Natural history specimen data linked to collectors and determiners held within, "New records for Albania based on taxa from the Prespa National Park". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/79411ac9-2bee-443b-970a-47197751c777 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/79411ac9-2bee-443b-970a-47197751c777. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18688023
title: Linked collectors and determiners for: New records for Albania based on taxa from the Prespa National Park.

description: Natural history specimen data linked to collectors and determiners held within, "New records for Albania based on taxa from the Prespa National Park". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/79411ac9-2bee-443b-970a-47197751c777 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/79411ac9-2bee-443b-970a-47197751c777. Formatted as a Frictionless Data package.
DOI: 10.6075/j08053kp
title: CIL:57543, Drosophila melanogaster, S2* Cells. In Cell Image Library

description: Imaging mode: time lapse microscopy; point scanning confocal microscopy
Visualization methods: Object Masks
description: Nuclear segmentation masks for individual cells in Dpt_100X_T3
description: Nuclear mask produced with ImageJ Trackmate plugin with Cellpose segmentation, followed by custom ImageJ macro to match cell nuclei and cytoplasm.

Time-lapse acquisition:

-- Every 15 minutes for 2 hours (9 frames)
-- Every 30 minutes for 8 hours (17 frames)
-- Every 1 hour for 5 hours (6 frames)
DOI: 10.25549/rbm-c58-4350
title: Nude woman walking and carrying basket on head

description: Nude woman walking and carrying basket on head. This is plate 34, captioned "Walking and carrying a 15-lb. basket on head, hands raised" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.6075/j0cr5vb5
title: CIL:57522, Pseudomonas putida, G-proteobacteria. In Cell Image Library

description: Taken by ZEISS Elyra 7 with lattice SIM mounted with the ZEISS objective Plan-Apochromat 63x/1,4 Oil DIC M27 and captured in pixel size 60 nm. Channels 488 nm and 561 nm. 3D data processed with Zeiss software SIM2 and visualised as orthogonal projection.
description: Imaging mode: structured illumination microscopy (SIM)
Visualization methods: msfGFP; mScarlet; FP expression
description: Fluorescence microscopy image of two P. putida strains, each with basal expression of either msfGFP or mScarlet from the genomic Tn7 insertion site. Population dynamics of strains after inoculation at a 1:1 ratio in rich growth medium.
DOI: 10.6075/j0hh6m2w
title: CIL:57521, Pseudomonas putida, G-proteobacteria. In Cell Image Library

description: Imaging mode: structured illumination microscopy (SIM)
Visualization methods: msfGFP; mScarlet; FP expression
description: Taken by ZEISS Elyra 7 with lattice SIM mounted with the ZEISS objective Plan-Apochromat 63x/1,4 Oil DIC M27 and captured in pixel size 60 nm. Channels 488 nm and 561 nm. 3D data processed with Zeiss software SIM2 and visualised as orthogonal projection.
description: Fluorescence microscopy image of two P. putida strains, each with basal expression of either msfGFP or mScarlet from the genomic Tn7 insertion site. Population dynamics of strains 16 h after inoculation in rich growth medium.
DOI: 10.25549/rbm-c58-5922
title: Nude man running at full speed

description: Nude man running at full speed. This is plate 65, captioned "Running at full speed" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.6075/j0xk8gjp
title: CIL:57520, Aedes aegypti Maxillary Palp. In Cell Image Library

description: Imaging mode: serial block face SEM (SBFSEM)
description: Sample Preparation and Imaging Overview:

Following the CryoChem protocol (Tsang et al., 2018), a Aedes Aegypti maxillary palp was prepared for high-resolution volume EM. The maxillary palp was isolated, cryofixed using high-pressure freezing, and processed through freeze-substitution, rehydration, en bloc heavy metal staining, dehydration, and Durcupan resin infiltration.

Microcomputed X-ray tomography was used to orient the sample, which was subsequently mounted on an aluminum pin with conductive epoxy and sputter-coated with gold-palladium. Imaging was performed using a Gemini SEM 300 (Zeiss) equipped with a Gatan 3View2XP system and an OnPoint backscatter detector. The SBEM imaging parameters included 2.5 kV accelerating voltage, 30-μm aperture, 1 μs dwell time, 5 nm per pixel resolution, and 40 nm Z-step size. To minimize charging artifacts, focal charge compensation with nitrogen gas was applied.
description: In 2018, the Su and Ellisman group developed a novel electron microscopy technique called CryoChem, designed to achieve optimal morphological preservation of genetically labeled tissues. To evaluate the preservation quality provided by CryoChem, we performed Serial Block-Face Scanning Electron Microscopy (SBEM) on CryoChem-processed Maxillary Palp.
DOI: 10.6075/j02b901c
title: CIL:57545, Drosophila melanogaster, S2* Cells. In Cell Image Library

description: Nuclear-localized RNA aptamer foci segmentation masks for individual cells in Dpt_100X_T2
description: Imaging mode: time lapse microscopy; point scanning confocal microscopy
Visualization methods: Binary masks
description: Nuclear RNA foci mask produced with ilastik trained model processing 

Time-lapse acquisition:

-- Every 15 minutes for 2 hours (9 frames)
-- Every 30 minutes for 8 hours (17 frames)
-- Every 1 hour for 5 hours (6 frames)
DOI: 10.25549/rbm-c58-5925
title: Nude man running at full speed

description: Nude man running at full speed. This is plate 65, captioned "Running at full speed" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.15468/dl.j2p8dv
title: Occurrence Download

description: A dataset containing 1728 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Conus geographus, Conus tulipa, Conus obscurus, Conus cuvieri, Conus eldredi, Conus fragilissimus)"
 ]
}

 The dataset includes 1728 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028278-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6075/j0639qqv
title: CIL:57532, Drosophila melanogaster, S2* Cells. In Cell Image Library

description: Cytoplasmic mask produced with ImageJ Trackmate plugin with Cellpose segmentation, followed by custom ImageJ macro to match cell nuclei and cytoplasm. 

Time-lapse acquisition:

-- Every 15 minutes for 2 hours (9 frames)
-- Every 30 minutes for 8 hours (17 frames)
-- Every 1 hour for 5 hours (6 frames)
description: Imaging mode: time lapse microscopy; point scanning confocal microscopy
Visualization methods: Object Masks
description: Cytoplasmic segmentation masks for individual cells in 04_Dpt_10X_1_maxZ
DOI: 10.6075/j09s1s1h
title: CIL:57530, Homo sapiens, Human colon cancer. In Cell Image Library

description: Decellularized liver tissue re-seeded with HCT 116 cells. Fixed at day 5. Treated with 500 uM oxaliplatin.
description: Imaging mode: fluorescence microscopy
Visualization methods: FIJI/ImageJ
description: BioTracker was illuminated with 638 nm and detected with a 660+ nm filter. Approximately 1.5 mW of 638 nm excitation power (laser output) was used to excite the BioTracker dye with an integration time of 20 ms per frame. Cells and the biomatrix scaffold were imaged simultaneously for each sample. Isotropic 1.793 µm3 voxels
DOI: 10.25549/rbm-c58-5934
title: Nude man running

description: Nude man running. This is plate 66, captioned "Running" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.5281/zenodo.18688024
title: Linked collectors and determiners for: Lichen herbarium, Oslo (O) UiO.

description: Natural history specimen data linked to collectors and determiners held within, "Lichen herbarium, Oslo (O) UiO". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/7948250c-6958-4a29-a670-ed1015b26252 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/7948250c-6958-4a29-a670-ed1015b26252. Formatted as a Frictionless Data package.
DOI: 10.6075/j0fj2hrt
title: CIL:57536, Drosophila melanogaster, S2* Cells. In Cell Image Library

description: Cells were adhered to glass-bottom wells coated with concanavalin A (a lectin protein), and stimulated with 100 µg/mL DAP-type peptidoglycan (PGN).

Microscopy Setup
Imaging was performed on a Nikon A1R point-scanning confocal microscope equipped with high-sensitivity GaAsP PMTs and a 60× oil immersion objective (NA = 1.4). Acquisition was controlled via Nikon Elements software.

Imaging Parameters
Time-lapse acquisition:

-- 810 minutes following PGN addition
-- Every 30 seconds for 2 hours 
-- Image dimensions: 294.6 × 294.6 µm, Resolution: 3.4756 pixels per µm
description: Live-cell imaging of NF-κB immune response in Drosophila S2* cells 810 minutes after stimulus, including nuclear NF-κB and transcription of Dpt gene.
description: Imaging mode: time lapse microscopy; point scanning confocal microscopy
Visualization methods: Channel 1: Hoechst 33258-labeled nuclei; Channel 2: Halotag-labeled Relish (NF-κB) proteins, stained with JF₆₅₀; Channel 3: RhoBAST RNA aptamers under immune-responsive enhancers, labeled with SpyRHO₅₅₅
DOI: 10.15468/dl.9pas9t
title: Occurrence Download

description: A dataset containing 2334911 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((7.24014 47.37188,-39.48046 52.21974,-35.98381 49.39977,-33.97841 46.0764,-32.13648 42.39904,-31.24444 40,-29.55557 35,-28.42363 30.97225,-27.4029 24.27824,-27.2007 20,-27.08088 16.15913,-26.84414 10.71008,-25.75853 8.62684,-22.62635 5.66986,-18.65 3.30901,-15.40903 1.08129,-14.11704 0.64185,-8 0,-3 0,0.91169 -0.82723,3.16965 -2.49099,5.13051 -6.4127,5.80829 -10,6.75465 -15.00879,8.13776 -20,8.94131 -22.89975,9.25447 -25,10 -30,11.19077 -32.73596,13.32754 -35.48464,15.22565 -36.118,17.68792 -35.63939,19.95958 -34.8125,20.69103 -33.51616,21.09897 -31.14648,21 -30,20.0978 -25,18.9096 -18.415,18.86602 -14.71038,17.8184 -10,16.78561 -5,15.59462 0,15.15822 1.83213,14.69193 5.14942,13.74854 7.56199,11.8595 8.98972,9.83419 9.53295,3.84466 9.81024,-1.40698 10.22846,-5.92992 10.58865,-7.92785 11.94718,-9.17567 14.19326,-9.54776 16.40476,-9.63389 18.43411,-9.30854 20.53225,-8.40179 24.08885,-6.84452 27.57976,-6 30,-4.75192 35,-3.11556 39.88471,-1.39615 42.72463,0.00865 44.32134,1.78022 45.39444,7.24014 47.37188))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Accipitriformes",
 "Year 2015-2024"
 ]
}

 The dataset includes 2334911 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028256-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10585573
title: Linked collectors and determiners for: Lichen herbarium, Oslo (O) UiO.

description: Natural history specimen data linked to collectors and determiners held within, "Lichen herbarium, Oslo (O) UiO". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/7948250c-6958-4a29-a670-ed1015b26252 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/7948250c-6958-4a29-a670-ed1015b26252. Formatted as a Frictionless Data package.
DOI: 10.6075/j0k938h0
title: CIL:57544, Drosophila melanogaster, S2* Cells. In Cell Image Library

description: Imaging mode: time lapse microscopy; point scanning confocal microscopy
Visualization methods: Binary masks
description: Nuclear RNA foci mask produced with ilastik trained model processing.

Time-lapse acquisition:

-- Every 15 minutes for 2 hours (9 frames)
-- Every 30 minutes for 8 hours (17 frames)
-- Every 1 hour for 5 hours (6 frames)
description: Nuclear-localized RNA aptamer foci segmentation masks for individual cells in Dpt_100X_T1
DOI: 10.25549/rbm-c58-5953
title: Nude man running

description: Nude man running. This is plate 68, captioned "Running" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25919/nh9d-t846
title: VAST Extragalactic DR1: light curve database and cutouts

description: This collection contains high-level data products for all sources in VAST Extragalactic DR1 (de Ruiter et al. 2026). After applying the filtering criteria described in de Ruiter et al. (2026), the final sample consists of 548,113 astrophysical sources.
 
These products are designed to allow users to interact with the light curve database, and inspect the radio light curves and cutouts of their sources of interest. A Jupyter notebook demonstrating how to work with the data is available at https://github.com/IrisdeRuiter/VAST_Extragalactic_DR1

The collection includes two main components:
1) A light curve database 
2) Cutouts for each source in the database

1. Light curve database
The light curve database is composed of three tables:
 - The measurements table contains detailed information about each measurement per source and per timestamp. 
 - The source table provides per-source statistics calculated across all measurements, including average position, maximum and average integrated/peak flux density, and the variability parameters. 
 - The image table describes the images and observations that make up VAST Extragalactic DR1. 
Appendix 2 in de Ruiter et al. (2026) provides a full description of all table columns. The light curve database tables are presented as csv and parquet files which can be read by data exploration libraries such as Pandas and vaex. 

2. Cutouts
Image cutouts are essential for assessing the quality and reliability of the light curves. They allow users to identify issues such as spurious detections, high local noise, or artefacts near bright sources.
Each source has an associated FITS cube containing cutouts for all individual detections. These cubes are named using the unique source identifier from the light curve database.

Caveats
We encourage the community to make use of the light curves in this release, but users should keep the following caveats in mind (see sections 4.3 and 4.4 in de Ruiter et al. 2026 for full details):
 - Despite careful filtering efforts, this data release will contain spurious sources and measurements. We encourage users to inspect the image cutouts for their sources, to ensure that the light curves only include reliable flux density measurements.
 - This data release does not contain light curves for all sources in the VAST Extragalactic survey footprint. For example, sources that are too bright, too faint or extended are not included; see detailed filters in de Ruiter et al (2026).
DOI: 10.5281/zenodo.18688025
title: Linked collectors and determiners for: Insect Collection from the Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Portugal.

description: Natural history specimen data linked to collectors and determiners held within, "Insect Collection from the Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Portugal". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/79673413-746f-48f2-bd8a-7cf27807317e using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/79673413-746f-48f2-bd8a-7cf27807317e. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10585575
title: Linked collectors and determiners for: Insect Collection from the Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Portugal.

description: Natural history specimen data linked to collectors and determiners held within, "Insect Collection from the Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Portugal". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/79673413-746f-48f2-bd8a-7cf27807317e using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/79673413-746f-48f2-bd8a-7cf27807317e. Formatted as a Frictionless Data package.
DOI: 10.6075/j0q2417q
title: CIL:57539, Drosophila melanogaster, S2* Cells. In Cell Image Library

description: Imaging mode: time lapse microscopy; point scanning confocal microscopy
Visualization methods: Object Masks
description: Nuclear mask produced with ImageJ Trackmate plugin with Cellpose segmentation, followed by custom ImageJ macro to match cell nuclei and cytoplasm.

Time-lapse acquisition:

-- Every 15 minutes for 2 hours (9 frames)
-- Every 30 minutes for 8 hours (17 frames)
-- Every 1 hour for 5 hours (6 frames)
description: Nuclear segmentation masks for individual cells in Dpt_100X_T1
DOI: 10.25549/rbm-c58-5968
title: Nude man running

description: Nude man running. This is plate 68, captioned "Running" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.6075/j0tt4rzb
title: CIL:57540, Drosophila melanogaster, S2* Cells. In Cell Image Library

description: Imaging mode: time lapse microscopy; point scanning confocal microscopy
Visualization methods: Object Masks
description: Cytoplasmic mask produced with ImageJ Trackmate plugin with Cellpose segmentation, followed by custom ImageJ macro to match cell nuclei and cytoplasm. 

Time-lapse acquisition:

-- Every 15 minutes for 2 hours (9 frames)
-- Every 30 minutes for 8 hours (17 frames)
-- Every 1 hour for 5 hours (6 frames)
description: Cytoplasmic segmentation masks for individual cells in Dpt_100X_T2
DOI: 10.6075/j0zk5hp2
title: CIL:57542, Drosophila melanogaster, S2* Cells. In Cell Image Library

description: Cytoplasmic mask produced with ImageJ Trackmate plugin with Cellpose segmentation, followed by custom ImageJ macro to match cell nuclei and cytoplasm. 

Time-lapse acquisition:

-- Every 15 minutes for 2 hours (9 frames)
-- Every 30 minutes for 8 hours (17 frames)
-- Every 1 hour for 5 hours (6 frames)
description: Imaging mode: time lapse microscopy; point scanning confocal microscopy
Visualization methods: Object Masks
description: Cytoplasmic segmentation masks for individual cells in Dpt_100X_T3
DOI: 10.25549/rbm-c58-5375
title: Nude woman walking, turning around and using a sprinkling pot

description: Nude woman walking, turning around and using a sprinkling pot. This is plate 51, captioned "Walking, turning around and using a sprinkling pot" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.6075/j03b6149
title: CIL:57525, Pseudomonas putida, G-proteobacteria. In Cell Image Library

description: Taken by ZEISS Elyra 7 with lattice SIM mounted with the ZEISS objective Plan-Apochromat 63x/1,4 Oil DIC M27 and captured in pixel size 60 nm. Channels 488 nm and 561 nm. 3D data processed with Zeiss software SIM2 and visualised as orthogonal projection.
description: Fluorescence microscopy image of two P. putida strains, each with basal expression of either msfGFP or mScarlet from the genomic Tn7 insertion site. Population dynamics of strains exhibiting obligate dependency. Minimal medium supplemented with 1 g/l cellobiose and 1 g/l xylobiose as carbon source. As part of four images used to calculate cell clump formation. Hypothesis: with a carbon source that promotes the dependency, clumps will form as a response to cooperation.
description: Imaging mode: structured illumination microscopy (SIM)
Visualization methods: msfGFP; mScarlet; FP expression
DOI: 10.6075/j07082dv
title: CIL:57527, Pseudomonas putida, G-proteobacteria. In Cell Image Library

description: Imaging mode: structured illumination microscopy (SIM)
Visualization methods: msfGFP; mScarlet; FP expression
description: Taken by ZEISS Elyra 7 with lattice SIM mounted with the ZEISS objective Plan-Apochromat 63x/1,4 Oil DIC M27 and captured in pixel size 60 nm. Channels 488 nm and 561 nm. 3D data processed with Zeiss software SIM2 and visualised as orthogonal projection.
description: Fluorescence microscopy image of two P. putida strains, each with basal expression of either msfGFP or mScarlet from the genomic Tn7 insertion site. Population dynamics of strains exhibiting obligate dependency. Minimal medium supplemented with 1 g/l cellobiose and 1 g/l xylobiose as carbon source. As part of four images used to calculate cell clump formation. Hypothesis: with a carbon source that promotes the dependency, clumps will form as a response to cooperation.