cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5634288
title: Workflow Analysis of Data Science Code in PublicGitHub Repositories

description: A dataset containing data science code snippets taken from the Jupyter notebook cells annotated with the data science step it performs is provided along with a set of analyses to understand the data science implementation life cycle.
DOI: 10.25919/q06r-9h25
title: Parkes observations for project P1068 semester 2021APRS_34

description: In the fast-moving world of Fast Radio Bursts (FRBs), the critical question of what fraction of FRBs emit repeat bursts remains unanswered. Of order 20 repeating FRBs are now known, and their spectro-temporal properties hint at differences with apparently non-repeating bursts - the poor statistics preclude a definitive diagnosis. FRB 180301 is a promising source for further study for multiple reasons: it is an active repeater similar to the FRB 121102 and the most active FRB source visible to Parkes, and it shows diverse polarization properties across the repeat bursts. We have detected multiple repeat bursts from this source in our campaign last semester. The signal-to-noise ratio (S/N) of these detections are not sufficiently significant to measure their spectro-polarimetric properties. We request Parkes observations with the UWL receiver to continue the monitoring of this FRB source in order to characterize the broadband emission properties. Some of the key goals for these future observations are: to constrain the repetition rate, identify any variation of pulse characteristics over time, measure the polarimetric properties and provide insight into the emission mechanisms. The diverse polarization angle swings in the FAST detections and significant circular polarization in the original Parkes detection indicate the progenitor is embedded in an extreme magneto-ionic environment with complex field structure that has not been seen before. Understanding these diverse polarization properties from this source could be the key to distinguish repeater sources from the apparent non-repeaters ones.
DOI: 10.25919/1hcj-n558
title: Parkes observations for project P456 semester 2021OCTS_01

description: The Parkes Pulsar Timing Array (PPTA) project has three primary goals: (a) detection of gravitational waves from astronomical sources, (b) establishment of a pulsar timescale, and (c) improvement of our understanding of Solar-system dynamics. We are now in an exciting regime where a signal detected in our (and other data sets) has the form expected for a gravitational wave background. We are therefore now attempting to confirm, or deny, this exciting result. With this proposal we aim to maintain our pre-eminent position in the field. Unlike most observing proposals, this is a continuing proposal for which the observations will continue to improve bounds on ultra-low-frequency gravitational waves until they are finally detected. Continued Parkes observations will remain valuable at least until the first stage of the SKA is able to improve on our sensitivity and observing cadence. Even after the gravitational wave background is detected we will want to continue observations in support of the nascent field of gravitational wave astronomy!
DOI: 10.5281/zenodo.5634293
title: Workflow Analysis of Data Science Code in PublicGitHub Repositories

description: A dataset containing data science code snippets taken from the Jupyter notebook cells annotated with the data science step it performs is provided along with a set of analyses to understand the data science implementation life cycle.
DOI: 10.5063/f13n21v9
title: Designcraft for experiments: Backyard Bioblitz

description: A set of remote exercises exploring experimental design for the life sciences. A total of three independent labs were done to focus on different design principles, sampling techniques, and taxa. Exercises are described in full in this open access manual entitled Designcraft for experiments. Data were collected by students in a third-year biology course offering at York University in Toronto, ON, Canada. Students collected the data and published individual datasets to figshare with a CCBY4.0 licensing. Data were then compiled for each lab including balcony birdwatching, backyard bioblitz, and solo surveys. The provenance of each independent observation in the compiled data was recognized by attribution to the initials of the primary data author including citation via DOI and link to figshare.AttributionCJL designed the experiments.Students in course offering collected, innovated, and published individual, primary datasets.SH and CJL reviewed the compiled data.MetadataRecord-levelyear is the calendar year of work not termexperiment describes the three experimental options in designcraft booksource is either full experiment or pilot experimentrep is the replicate per experimental setlocation is the site name locallyhabitat is the ecological classificationdate is the calendar date for each observation
DOI: 10.5063/f1zw1jc1
title: Designcraft for experiments: Balcony Birdwatching

description: A set of remote exercises exploring experimental design for the life sciences. A total of three independent labs were done to focus on different design principles, sampling techniques, and taxa. Exercises are described in full in this open access manual entitled Designcraft for experiments. Data were collected by students in a third-year biology course offering at York University in Toronto, ON, Canada. Students collected the data and published individual datasets to figshare with a CCBY4.0 licensing. Data were then compiled for each lab including balcony birdwatching, backyard bioblitz, and solo surveys. The provenance of each independent observation in the compiled data was recognized by attribution to the initials of the primary data author including citation via DOI and link to figshare.AttributionCJL designed the experiments.Students in course offering collected, innovated, and published individual, primary datasets.SH and CJL reviewed the compiled data.MetadataRecord-levelyear is the calendar year of work not termexperiment describes the three experimental options in designcraft booksource is either full experiment or pilot experimentrep is the replicate per experimental setlocation is the site name locallyhabitat is the ecological classificationdate is the calendar date for each observation
DOI: 10.5063/f1v40snm
title: Designcraft for experiments: Solo Surveys

description: A set of remote exercises exploring experimental design for the life sciences. A total of three independent labs were done to focus on different design principles, sampling techniques, and taxa. Exercises are described in full in this open access manual entitled Designcraft for experiments. Data were collected by students in a third-year biology course offering at York University in Toronto, ON, Canada. Students collected the data and published individual datasets to figshare with a CCBY4.0 licensing. Data were then compiled for each lab including balcony birdwatching, backyard bioblitz, and solo surveys. The provenance of each independent observation in the compiled data was recognized by attribution to the initials of the primary data author including citation via DOI and link to figshare.AttributionCJL designed the experiments.Students in course offering collected, innovated, and published individual, primary datasets.SH and CJL reviewed the compiled data.MetadataRecord-levelyear is the calendar year of work not termexperiment describes the three experimental options in designcraft booksource is either full experiment or pilot experimentrep is the replicate per experimental setlocation is the site name locallyhabitat is the ecological classificationdate is the calendar date for each observation
DOI: 10.5281/zenodo.5626501
title: ACTN3 study data

description: Data set from the study "Investigating the influence of ACTN3 R577X polymorphism on performance and angular kinematics using motion capture technology". Statistical significant differences highlighted with yellow.
DOI: 10.5281/zenodo.5626500
title: ACTN3 study data

description: Data set from the study "Investigating the influence of ACTN3 R577X polymorphism on performance and angular kinematics using motion capture technology". Statistical significant differences highlighted with yellow.
DOI: 10.5281/zenodo.5625486
title: COVID-19 vaccination data in Israel by age over time until August 2021

description: COVID-19 vaccination data in Israel processed to show vaccination by age over time. These datasets are derived from publicly available Ministry of Health data, but processed for analytics about uptake in different age groups over time. They cover the mass vaccination campaign for COVID-19 until August 2021. The campaign consisted of the administration of multiple doses of the Pfizer vaccine.
description: Original Ministry of Health data often records strings instead of numbers, and sometimes records estimated numbers i.e. "&lt;15". All data recorded as "&lt;15" was changed to the numeric value of zero.
DOI: 10.5281/zenodo.5622405
title: Prueba

description: prueba
DOI: 10.5281/zenodo.5622404
title: Prueba

description: prueba
DOI: 10.5517/ccdc.csd.cc27vjwj
title: CCDC 2081088: Experimental Crystal Structure Determination

description: Related Article: Dan Sakai, Mizuki Machida, Keiji Mori|2021|Tetrahedron Lett.|83|153408|doi:10.1016/j.tetlet.2021.153408
DOI: 10.5517/ccdc.csd.cc2873pb
title: CCDC 2092211: Experimental Crystal Structure Determination

description: Related Article: Samantha A. Murphy, Caroline Phelan, Sankarasekaran Shanmugaraju, Salvador Blasco, Thorfinnur Gunnlaugsson|2021|Tetrahedron Lett.|83|153405|doi:10.1016/j.tetlet.2021.153405
DOI: 10.5517/ccdc.csd.cc2885b2
title: CCDC 2093223: Experimental Crystal Structure Determination

description: Related Article: Hongcai Zhao, Zhengbing Zhang, Wenhua Lu, Pan Han, Wei Wang, Linhai Jing|2021|Tetrahedron Lett.|83|153426|doi:10.1016/j.tetlet.2021.153426
DOI: 10.5281/zenodo.3719291
title: TCGA Chemotherapy Response Dataset

description: Dataset on chemotherapeutic drug responses in TCGA cancer patients, cross-referenced for a hit in TCIA.at database, consisting of clinical (TCGA), cancer tissue gene-expression (TCGA) and tumor-immunome (TCIA) features. The dataset consists of 5 common chemotherapy agents, 3 CRC agents (FOLFOX, 5FU, Oxaliplatin) and 2 Lung agents (Carboplatin, Cisplatin). FOLFOX as a combinational therapy or regimen, was compiled from timings of monotherapies given to patients and as such is a novel dataset derived from TCGA data. FOLFOX dataset is primarily firstline treatment, while other drugs are not to be interpreted as firstline treatments. Drug datasets are individually available in own CSV files. <strong>Citation</strong><br> Dalibor Hrg, Balthasar Huber, Lukas A. Huber. (2020). TCGA Chemotherapy Response Dataset. Zenodo. http://doi.org/10.5281/zenodo.3719291 The results here are in whole or part based upon data generated by the TCGA Research Network: https://www.cancer.gov/tcga. <strong>License </strong><br> CC BY-SA 4.0 International https://creativecommons.org/licenses/by-sa/4.0. Authors take no liability for any use of this data. <strong>Contributions</strong><br> D. Hrg and B. Huber acknowledge major and equal work effort: data understanding, data science and dataset preparation (monotherapies and FOLFOX); L. A. Huber: help with dictionary of drug names and curration/cleaning of FOLFOX entries, clinical validation. <strong>Contact & Maintenance</strong><br> dalibor.hrg@gmail.com<br> dalibor.hrg@i-med.ac.at
description: This work was partially funded by EU ERC Advanced Grant EPIC 786295 as a collaboration effort between Medical University of Innsbruck and University of Innsbruck.
DOI: 10.5281/zenodo.3719290
title: TCGA Chemotherapy Response Dataset

description: Dataset on chemotherapeutic drug responses in TCGA cancer patients, cross-referenced for a hit in TCIA.at database, consisting of clinical (TCGA), cancer tissue gene-expression (TCGA) and tumor-immunome (TCIA) features. The dataset consists of 5 common chemotherapy agents, 3 CRC agents (FOLFOX, 5FU, Oxaliplatin) and 2 Lung agents (Carboplatin, Cisplatin). FOLFOX as a combinational therapy or regimen, was compiled from timings of monotherapies given to patients and as such is a novel dataset derived from TCGA data. FOLFOX dataset is primarily firstline treatment, while other drugs are not to be interpreted as firstline treatments. Drug datasets are individually available in own CSV files. <strong>Citation</strong><br> Dalibor Hrg, Balthasar Huber, Lukas A. Huber. (2020). TCGA Chemotherapy Response Dataset. Zenodo. http://doi.org/10.5281/zenodo.3719291 The results here are in whole or part based upon data generated by the TCGA Research Network: https://www.cancer.gov/tcga. <strong>License </strong><br> CC BY-SA 4.0 International https://creativecommons.org/licenses/by-sa/4.0. Authors take no liability for any use of this data. <strong>Contributions</strong><br> D. Hrg and B. Huber acknowledge major and equal work effort: data understanding, data science and dataset preparation (monotherapies and FOLFOX); L. A. Huber: help with dictionary of drug names and curration/cleaning of FOLFOX entries, clinical validation. <strong>Contact & Maintenance</strong><br> dalibor.hrg@gmail.com<br> dalibor.hrg@i-med.ac.at
description: This work was partially funded by EU ERC Advanced Grant EPIC 786295 as a collaboration effort between Medical University of Innsbruck and University of Innsbruck.
DOI: 10.5519/qd.wjly766t
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1742415 records)
DOI: 10.5519/qd.ehjy48i4
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (912991 records)
DOI: 10.5281/zenodo.5634485
title: Cathorops multiradiatus RB0728 decontaminated FSCR

description: .
DOI: 10.5281/zenodo.5634484
title: Cathorops multiradiatus RB0728 decontaminated FSCR

description: .
DOI: 10.3886/e113924v1-100160
title: Replication data for: High-Dimensional Methods and Inference on Structural and Treatment Effects

description: Data with a large number of variables relative to the sample size—"high-dimensional data"—are readily available and increasingly common in empirical economics. High-dimensional data arise through a combination of two phenomena. First, the data may be inherently high dimensional in that many different characteristics per observation are available. For example, the US Census collects information on hundreds of individual characteristics and scanner datasets record transaction-level data for households across a wide range of products. Second, even when the number of available variables is relatively small, researchers rarely know the exact functional form with which the small number of variables enter the model of interest. Researchers are thus faced with a large set of potential variables formed by different ways of interacting and transforming the underlying variables. This paper provides an overview of how innovations in "data mining" can be adapted and modified to provide high-quality inference about model parameters. Note that we use the term "data mining" in a modern sense which denotes a principled search for "true" predictive power that guards against false discovery and overfitting, does not erroneously equate in-sample fit to out-of-sample predictive ability, and accurately accounts for using the same data to examine many different hypotheses or models.
DOI: 10.5281/zenodo.5634538
title: Cellarinelloides crassus decontaminated FSCR

description: .
DOI: 10.5281/zenodo.5634537
title: Cellarinelloides crassus decontaminated FSCR

description: .
DOI: 10.18739/a2z892g42
title: Raw files from flight RU_ANS_TR3_FL006R of the uncrewed aerial vehicle remote sensing imagery of postfire vegetation in Siberian larch forests 2018-2019

description: This data set contains the raw files from flight RU_ALN_TR1_FL007R. The remote sensing imagery is collected using uncrewed aerial vehicles at a series of fire perimeters in larch forests located in northeastern Siberia in 2018 and 2019. Images were collected using visible sensors (blue, green, and red wavelengths) and multispectral sensors (green, red, red-edge, and near-infrared wavelengths). The data were collected perpendicular to fire perimeter boundaries in order to characterize variation vegetation composition and structure between burned and burned forests, and as a function of distance from the unburned forest edge. The resulting images are co-located with field observations of ecosystem properties collected as part of this project that are posted in a related data set (Alexander et al, 2018). Heather Alexander, Jennie DeMarco, Rebecca Hewitt, Jeremy Lichstein, Michael Loranty, et al. 2018. Fire influences on forest recovery and associated climate feedbacks in Siberian Larch Forests, Russia, June-July 2018. Arctic Data Center. urn:uuid:a5de1514-78d3-449f-aad1-2ff8f8d0fb27.
DOI: 10.5519/qd.op3srp2c
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (7 records)
DOI: 10.6084/m9.figshare.20035604
title: Additional file 5 of Transcriptome analysis reveals multiple effects of nitrogen accumulation and metabolism in the roots, shoots, and leaves of potato (Solanum tuberosum L.)

description: Additional file 5: Table S5. The genes overlapping in different comparisons in the Venn diagram.
DOI: 10.6084/m9.figshare.20035592.v1
title: Additional file 1 of Transcriptome analysis reveals multiple effects of nitrogen accumulation and metabolism in the roots, shoots, and leaves of potato (Solanum tuberosum L.)

description: Additional file 1:  Table S1. Primer sequences used for qRT-PCR.
DOI: 10.6084/m9.figshare.13226024
title: Additional file 6 of Heterologous expression of heat stress-responsive AtPLC9 confers heat tolerance in transgenic rice

description: Additional file 6: Supplemental Data Set 6: Transcriptomic comparison results of six selected AtPLC9 targets generated from Plant Regulomics database.
DOI: 10.6084/m9.figshare.20035620.v1
title: Additional file 1 of LukS-PV inhibits hepatocellular carcinoma cells migration by downregulating HDAC6 expression

description: Additional file 1: Supplementary Table S1. Proteomic changes in HepG2 cells after PBS or LukS-PV treatment were determined with quantitative proteomics sequencing.
DOI: 10.6084/m9.figshare.20035623.v1
title: Additional file 2 of LukS-PV inhibits hepatocellular carcinoma cells migration by downregulating HDAC6 expression

description: Additional file 2: Supplementary Table S2. Identifed proteins associated with HDAC6 were analyzed by mass spectrometry.
DOI: 10.25549/usctheses-ouc11355711
title: 00001.tif
DOI: 10.6084/m9.figshare.12185760
title: COVID-19 serial interval estimates based on confirmed cases in public reports from 86 Chinese cities

description: COVID-19
DOI: 10.6084/m9.figshare.22147283
title: Dataset for paper "Overestimated nitrogen loss from denitrification for natural terrestrial ecosystems in CMIP6 Earth System Models" authored by Feng et al. (2023) (https://doi.org/10.1038/s41467-023-38803-z)

description: This is the dataset for paper "Overestimated nitrogen loss from denitrification for natural terrestrial ecosystems in CMIP6 Earth System Models" authored by Feng et al.
<br>
The dataset contains six .nc files, and each file contains soil_N15, fgas, and N loss and their quantiles derived with different combinations of N weathering, N depostion and BNF.
<br>
Figure1_data.nc is the data for Figure 1 in the main.
DOI: 10.6084/m9.figshare.13225925
title: Additional file 7 of Genome-wide identification, and phylogenetic and expression profiling analyses, of XTH gene families in Brassica rapa L. and Brassica oleracea L.

description: Additional file 7. Ka/Ks analysis and estimated time of divergence of duplicated pairs of XTH genes in B. rapa and B. oleracea.
DOI: 10.6084/m9.figshare.13225922
title: Additional file 6 of Genome-wide identification, and phylogenetic and expression profiling analyses, of XTH gene families in Brassica rapa L. and Brassica oleracea L.

description: Additional file 6. XTH genes syntenic in A. thaliana, B. rapa and B. oleracea.
DOI: 10.6084/m9.figshare.13225922.v1
title: Additional file 6 of Genome-wide identification, and phylogenetic and expression profiling analyses, of XTH gene families in Brassica rapa L. and Brassica oleracea L.

description: Additional file 6. XTH genes syntenic in A. thaliana, B. rapa and B. oleracea.
DOI: 10.6084/m9.figshare.13226018.v1
title: Additional file 4 of Heterologous expression of heat stress-responsive AtPLC9 confers heat tolerance in transgenic rice

description: Additional file 4: Supplemental Data Set 4: List of genes differentially expressed between OE7 and WT after HS treatment.
DOI: 10.6084/m9.figshare.13226024.v1
title: Additional file 6 of Heterologous expression of heat stress-responsive AtPLC9 confers heat tolerance in transgenic rice

description: Additional file 6: Supplemental Data Set 6: Transcriptomic comparison results of six selected AtPLC9 targets generated from Plant Regulomics database.
DOI: 10.6084/m9.figshare.20035613
title: Additional file 7 of Transcriptome analysis reveals multiple effects of nitrogen accumulation and metabolism in the roots, shoots, and leaves of potato (Solanum tuberosum L.)

description: Additional file 7: Table S7. List of 116 selected differentially expressed genes related to N transport and metabolism.
DOI: 10.6084/m9.figshare.20035613.v1
title: Additional file 7 of Transcriptome analysis reveals multiple effects of nitrogen accumulation and metabolism in the roots, shoots, and leaves of potato (Solanum tuberosum L.)

description: Additional file 7: Table S7. List of 116 selected differentially expressed genes related to N transport and metabolism.
DOI: 10.6084/m9.figshare.7458806
title: Adaptive Huber Regression

description: <b>Big data can easily be contaminated by outliers or contain variables with heavy-tailed distributions, which makes many conventional methods inadequate. To address this challenge, we propose the adaptive Huber regression for robust estimation and inference. The key observation is that the robustification parameter should adapt to the sample size, dimension and moments for optimal tradeoff between bias and robustness. Our theoretical framework deals with heavy-tailed distributions with bounded</b>(1+δ)<b>th moment for any</b>δ&gt;0<b>. We establish a sharp phase transition for robust estimation of regression parameters in both low and high dimensions: when</b>δ≥1<b>, the estimator admits a sub-Gaussian-type deviation bound without sub-Gaussian assumptions on the data, while only a slower rate is available in the regime</b>0&lt;δ&lt;1<b>and the transition is smooth and optimal. In addition, we extend the methodology to allow both heavy-tailed predictors and observation noise. Simulation studies lend further support to the theory. In a genetic study of cancer cell lines that exhibit heavy-tailedness, the proposed methods are shown to be more robust and predictive. Supplementary materials for this article are available online.</b>
DOI: 10.6084/m9.figshare.7943312.v1
title: Additional file 1: of The karyotype of Aegilops geniculata and its use to identify both addition and substitution lines of wheat

description: Table S1. The 240 SNP markers shared by Sub L-1, Sub L-2, Sub L-3 and AS6. (XLSX 5838 kb)
DOI: 10.6084/m9.figshare.13225931.v1
title: Additional file 9 of Genome-wide identification, and phylogenetic and expression profiling analyses, of XTH gene families in Brassica rapa L. and Brassica oleracea L.

description: Additional file 9. The alignment file used as input for the ML analysis in FASTA format.
DOI: 10.5281/zenodo.10638995
title: ANYmal Parkour: Learning Agile Navigation for Quadrupedal Robots. Data-sets and plotting scripts for Fig. 3A / Fig. 3B / Fig. 4F
DOI: 10.5281/zenodo.10638996
title: ANYmal Parkour: Learning Agile Navigation for Quadrupedal Robots. Data-sets and plotting scripts for Fig. 3A / Fig. 3B / Fig. 4F