cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17028/rd.lboro.12124131.v1
title: Optimal Path Following for Small Fixed-Wing UAVs Under Wind Disturbances

description: The research data supporting this publication have been presented in the paper. Some raw flight test data are included in this archive. Please contact the authors for detail.
DOI: 10.6084/m9.figshare.12123984
title: CA-TP3 Soil Respiration Data 2017-2019

description: Soil CO2 emissions or soil respiration (Rs) data were measured at an eastern white pine forest (Pinus strobus L.) planted in 1974 as monoculture stands north of Lake Erie in southern Ontario, Canada. The forest site is part of the Turkey Point Observatory and has been associated with AmeriFlux and global Fluxnet initiatives, where it is known as CA-TP3. Half hourly Rs was recorded using an automated soil CO2 flux measurement system from 2017 to 2019 (excluding winter months). It was comprised of three main components: the gas analyzer (hosted in an analyzer control unit) (LI-8100A), long-term measurement chambers (LI8100-104), and a multiplexer to allow for multiple chamber measurements (LI-8150) (LI-COR Lincoln, Nebraska, USA). Chambers were equipped with a soil temperature (Ts) and soil moisture (SM) probe at 5 cm depth installed outside of the collar. The soil collars had internal diameter of approximately 20 cm, a height of 11.5 cm, and a thickness of 1 cm. Each collar was inserted approximately 7-8 cm into the soil surface, with 3 cm remaining above. The measurement chambers remained open when not taking measurements. Throughout the growing season, any vegetation growth was removed from inside the collars to eliminate potential photosynthesis effects. Tree density is 1583 tree per ha, Leaf Area Index is 6.6, Stand Basal Area is 40.0 m2 ha–1 and above ground biomass is 86.68 t C ha–1. Topography in the area is predominantly flat with occasional 0.5-3.0% undulating slopes. The soil at the site is well drained with a low water holding capacity and classified as brunisolic grey-brown luvisols in the Canadian System of Soil Classification and is composed of ~98% sand. The climate in the region is cool temperate with a 30-year mean annual temperature of 8.0 °C and mean annual precipitation of 1036 mm.<br>
DOI: 10.6084/m9.figshare.12123936
title: Hellespontus HiRISE DEM

description: A 2 m per pixel HiRISE DEM and 0.5 m per pixel orthorectified images of the Hellespontus Montes region of Mars, made from the image pair: ESP_039666_1380 and ESP_039732_1380.
DOI: 10.6084/m9.figshare.12123984.v1
title: CA-TP3_2017_2019.xlsx

description: Soil CO2 emissions or soil respiration (Rs) data were measured at an eastern white pine forest (Pinus strobus L.) planted in 1974 as monoculture stands north of Lake Erie in southern Ontario, Canada. The forest site is part of the Turkey Point Observatory and has been associated with AmeriFlux and global Fluxnet initiatives, where it is known as CA-TP3. Half hourly Rs was recorded using an automated soil CO2 flux measurement system from 2017 to 2019 (excluding winter months). It was comprised of three main components: the gas analyzer (hosted in an analyzer control unit) (LI-8100A), long-term measurement chambers (LI8100-104), and a multiplexer to allow for multiple chamber measurements (LI-8150) (LI-COR Lincoln, Nebraska, USA). Chambers were equipped with a soil temperature (Ts) and soil moisture (SM) probe at 5 cm depth installed outside of the collar. The soil collars had internal diameter of approximately 20 cm, a height of 11.5 cm, and a thickness of 1 cm. Each collar was inserted approximately 7-8 cm into the soil surface, with 3 cm remaining above. The measurement chambers remained open when not taking measurements. Throughout the growing season, any vegetation growth was removed from inside the collars to eliminate potential photosynthesis effects. Tree density is 1583 tree per ha, Leaf Area Index is 6.6, Stand Basal Area is 40.0 m2 ha–1 and above ground biomass is 86.68 t C ha–1. Topography in the area is predominantly flat with occasional 0.5-3.0% undulating slopes. The soil at the site is well drained with a low water holding capacity and classified as brunisolic grey-brown luvisols in the Canadian System of Soil Classification and is composed of ~98% sand. The climate in the region is cool temperate with a 30-year mean annual temperature of 8.0 °C and mean annual precipitation of 1036 mm.<br>
DOI: 10.6084/m9.figshare.12123936.v1
title: Hellespontus HiRISE DEM

description: A 2 m per pixel HiRISE DEM and 0.5 m per pixel orthorectified images of the Hellespontus Montes region of Mars, made from the image pair: ESP_039666_1380 and ESP_039732_1380.
DOI: 10.6084/m9.figshare.12123930
title: H3K27ac Data Matrix

description: Matrix of H3K27ac ChIP-seq signal at 288,711 peak regions. Peak regions were called using MACS2. ChIP-seq signal was quantified using align2rawsignal. <br>The final datasets consists of 288,711 rows (all peaks) by 44 columns (22 cell lines * 2 replicates). Row names indicate the location of the peak (e.g., chr1:30723-31057).<br>NOTE: This data was further normalized prior to analysis in the paper. We standardized each row and then quantile-normalized the columns.
DOI: 10.6084/m9.figshare.12123888
title: Do Mental Health Professionals Promote a Healthy Lifestyle among Individuals Experiencing Serious Mental Illness?

description: <b>Purpose:</b> While a healthy lifestyle would be an asset to people experiencing psychotic disorders, not all mental health professionals provide counselling regarding healthy behaviours, such as physical activity, healthy nutrition, and tobacco cessation. Therefore, the objective of the present study was to investigate the factors associated with health promotion practice (HPP) among mental health professionals. <b>Methods:</b> Cross-sectional survey including mental health professionals across the Province of Quebec (Canada). The promotion of health behaviour and the “Exercise in Mental Illness Questionnaire - Health Practitioner Version” and its adaptation for nutrition improvement and tobacco cessation were used to evaluate knowledge, beliefs, promotion behaviours, and barriers to HPP. <b>Results:</b> One hundred mental health professionals, most being nurses (29%) and medical doctors/psychiatrists (20%) were recruited throughout the province of Quebec (Canada). The rate of formal training among professionals was 11% for physical activity, 26% for nutrition, and 21% for tobacco cessation. Approximately 60% were promoting physical activity, 49% good nutrition, and 41% tobacco cessation. Professionals promoting healthy behaviours had a higher level of self-efficacy in HPP, were more likely to value physical health, and less likely to endorse barriers to HPP. <b>Conclusion:</b> Rates of formal training in lifestyle habits and health promotion (aiming at improving a healthy lifestyle in patients experiencing psychotic disorders) among mental health professionals are currently low in the Province of Quebec and need to be improved. In addition, the level of confidence and barriers that endorse healthy behaviours appear to be key factors in HPP among mental health professionals.
DOI: 10.6084/m9.figshare.12123882
title: R codes from Operating at the extreme: estimating the upper yield boundary of winter wheat production in commercial practice

description: Code used for the analysis of the data in the supplementary material
DOI: 10.6084/m9.figshare.12123888.v1
title: Do Mental Health Professionals Promote a Healthy Lifestyle among Individuals Experiencing Serious Mental Illness?

description: <b>Purpose:</b> While a healthy lifestyle would be an asset to people experiencing psychotic disorders, not all mental health professionals provide counselling regarding healthy behaviours, such as physical activity, healthy nutrition, and tobacco cessation. Therefore, the objective of the present study was to investigate the factors associated with health promotion practice (HPP) among mental health professionals. <b>Methods:</b> Cross-sectional survey including mental health professionals across the Province of Quebec (Canada). The promotion of health behaviour and the “Exercise in Mental Illness Questionnaire - Health Practitioner Version” and its adaptation for nutrition improvement and tobacco cessation were used to evaluate knowledge, beliefs, promotion behaviours, and barriers to HPP. <b>Results:</b> One hundred mental health professionals, most being nurses (29%) and medical doctors/psychiatrists (20%) were recruited throughout the province of Quebec (Canada). The rate of formal training among professionals was 11% for physical activity, 26% for nutrition, and 21% for tobacco cessation. Approximately 60% were promoting physical activity, 49% good nutrition, and 41% tobacco cessation. Professionals promoting healthy behaviours had a higher level of self-efficacy in HPP, were more likely to value physical health, and less likely to endorse barriers to HPP. <b>Conclusion:</b> Rates of formal training in lifestyle habits and health promotion (aiming at improving a healthy lifestyle in patients experiencing psychotic disorders) among mental health professionals are currently low in the Province of Quebec and need to be improved. In addition, the level of confidence and barriers that endorse healthy behaviours appear to be key factors in HPP among mental health professionals.
DOI: 10.6084/m9.figshare.12123876
title: R codes from Operating at the extreme: estimating the upper yield boundary of winter wheat production in commercial practice

description: Code used for the analysis of the data in the manuscript
DOI: 10.6084/m9.figshare.12123885
title: Index of Producer Prices of Agricultural Products from Operating at the extreme: estimating the upper yield boundary of winter wheat production in commercial practice

description: Economic data to deflate monetary values to their 2010 equivalent
DOI: 10.6084/m9.figshare.12123882.v1
title: R codes from Operating at the extreme: estimating the upper yield boundary of winter wheat production in commercial practice

description: Code used for the analysis of the data in the supplementary material
DOI: 10.6084/m9.figshare.12123855
title: Digital footprint from Southern Federal University, Russia: University students' activity during the first month of remote higher education due to coronavirus outbreak

description: In order to analyse University students' activity patterns, non-personal student user data (15,488 users) was enriched with the Teams user activity report for the 30 days since going remote over coronavirus pandemic.<br>Data fields description:<br>Campus location (0, 1, 2, 3)Form of education (On campus, Part-Time, Extramural)Degree pursued (Bachelor, Master, Diplom, PhD)Field of study CodeISCED Code (1, 2, 3, 4, 5)Year of study (1-6)Status (1 - Active, 0 - Sabbatical)Sex (M, F, N/A)Microsoft license type (Student, Alumni, Faculty)Assigned products (Office 365, Exchange, Flow, Stream)Microsoft Teams user activity report in the last 30 days (see Reference)<br> ChannelMessages<br> ReplyMessages PostMessages ChatMessages MeetingsOrganized MeetingsParticipated 1:1 Calls GroupCalls AudioTime (Minutes) VideoTime (Minutes) ScreenShareTime (Minutes)Time since last activity (d hh:mm:ss)
DOI: 10.6084/m9.figshare.12123885.v1
title: Index of Producer Prices of Agricultural Products from Operating at the extreme: estimating the upper yield boundary of winter wheat production in commercial practice

description: Economic data to deflate monetary values to their 2010 equivalent
DOI: 10.6084/m9.figshare.12123843
title: Supplementary Material for: The Closure of Patent Foramen Ovale in Preventing Subsequent Neurological Events: A Bayesian Network Meta-Analysis to Identify the Best Device

description: <b><i>Background:</i></b> Randomized-controlled trials (RCTs) reported a finding on the safety and efficacy of percutaneous patent foramen ovale (PFO) closure to prevent stroke recurrence. It showed that the Amplatzer (AMP) device appears to be superior to medical therapy (MT) in preventing strokes and episodes of atrial fibrillation (AF), than other devices. We performed a network meta-analysis (NMA) to evaluate the closure of PFO in preventing subsequent neurological events while investigating the results obtained by specific devices. <b><i>Methods:</i></b> We searched 3 databases (MEDLINE, EMBASE, CENTRAL/CCTR) and identified 6 RCTs until March 2019. We performed an NMA and used pooled ORs. Analyses were done in NetMetaXL1.6-WinBUGS1.4. <b><i>Results:</i></b> Six RCTs with 3,560 patients (mean age 45.2–46.2 years) were included in the present NMA. Depending on the device, 4 groups of patients were compared with MT: 1,889 patients undergoing PFO closure were significantly less likely to experience a stroke than 1,671 patients treated with MT (ORs 0.41; 95% Cr.I. 0.27–0.60 with fixed-effects model and ORs 0.22; 95% Cr.I. 0.05–0.70 with random-effects model). The patients with AMP showed a similar risk than those treated with Helex/Cardioform (HLX/CF) or with a group of 11 multiple devices. This suggests the equality between the 2 most currently used devices. When assessing TIA and, for the safety analysis, major bleeding, both models confirm no significant difference between any devices and MT. PFO closure increased the risk of new-onset AF: MT induces AF significantly less than all the devices. In favor of the AMP, there is a reduced number of cases of AF versus MT; however, no device superiority has been established in comparing HLX/CF and other devices in a random effect model. <b><i>Conclusions:</i></b> Our NMA provides evidence in favor of PFO closure with all the devices currently in use. We can conclude that these devices are better than MT, but not that 1 device is better than the rest in reducing stroke recurrences and AF episodes in the follow-up.
DOI: 10.6084/m9.figshare.12123876.v1
title: R codes from Operating at the extreme: estimating the upper yield boundary of winter wheat production in commercial practice

description: Code used for the analysis of the data in the manuscript
DOI: 10.6084/m9.figshare.12123843.v1
title: Supplementary Material for: The Closure of Patent Foramen Ovale in Preventing Subsequent Neurological Events: A Bayesian Network Meta-Analysis to Identify the Best Device

description: <b><i>Background:</i></b> Randomized-controlled trials (RCTs) reported a finding on the safety and efficacy of percutaneous patent foramen ovale (PFO) closure to prevent stroke recurrence. It showed that the Amplatzer (AMP) device appears to be superior to medical therapy (MT) in preventing strokes and episodes of atrial fibrillation (AF), than other devices. We performed a network meta-analysis (NMA) to evaluate the closure of PFO in preventing subsequent neurological events while investigating the results obtained by specific devices. <b><i>Methods:</i></b> We searched 3 databases (MEDLINE, EMBASE, CENTRAL/CCTR) and identified 6 RCTs until March 2019. We performed an NMA and used pooled ORs. Analyses were done in NetMetaXL1.6-WinBUGS1.4. <b><i>Results:</i></b> Six RCTs with 3,560 patients (mean age 45.2–46.2 years) were included in the present NMA. Depending on the device, 4 groups of patients were compared with MT: 1,889 patients undergoing PFO closure were significantly less likely to experience a stroke than 1,671 patients treated with MT (ORs 0.41; 95% Cr.I. 0.27–0.60 with fixed-effects model and ORs 0.22; 95% Cr.I. 0.05–0.70 with random-effects model). The patients with AMP showed a similar risk than those treated with Helex/Cardioform (HLX/CF) or with a group of 11 multiple devices. This suggests the equality between the 2 most currently used devices. When assessing TIA and, for the safety analysis, major bleeding, both models confirm no significant difference between any devices and MT. PFO closure increased the risk of new-onset AF: MT induces AF significantly less than all the devices. In favor of the AMP, there is a reduced number of cases of AF versus MT; however, no device superiority has been established in comparing HLX/CF and other devices in a random effect model. <b><i>Conclusions:</i></b> Our NMA provides evidence in favor of PFO closure with all the devices currently in use. We can conclude that these devices are better than MT, but not that 1 device is better than the rest in reducing stroke recurrences and AF episodes in the follow-up.
DOI: 10.6084/m9.figshare.12123732
title: pearl river estuary_sediment age

description: model inputs and codes
DOI: 10.6084/m9.figshare.12123726
title: Supplementary Material for: Testing the Interpersonal-Cognitive Model of Auditory Verbal Hallucinations in Youths with Either Early-Stage Borderline Personality Disorder or First-Episode Schizophrenia Spectrum Disorder

description: This is the first study to explore interpersonal schemata in outpatient youths (age 15–25 years) with early-stage borderline personality disorder (BPD) and auditory verbal hallucinations (AVH). It also aimed to replicate, in a transdiagnostic youth sample, the finding from studies of adults with AVH that negative beliefs about the self and others lead to negative appraisals of voices, which in turn elicits depression. The following 3 groups were compared: youth with BPD+AVH (<i>n</i> = 23), youth with schizophrenia spectrum disorder (SZ) with AVH (SZ+AVH, <i>n</i> = 20), and youths with BPD who did not experience AVH (BPD no AVH, <i>n</i> = 23). The BPD+AVH group reported more negative and fewer positive self schemata than the SZ+AVH group. They also saw themselves as being more socially inferior to others than did the SZ+AVH group, but they did not differ in appraisals of self or others, compared with the BPD no AVH group. In youths with AVH (BPD+AVH, SZ+AVH combined), the indirect effect of beliefs about self or others, via negative appraisals of voices on depression, was not significant. Instead, a significant indirect effect of negative appraisals of voices on depression, via negative beliefs about self, was found. The experience of AVH during adolescence and young adulthood, when the identity is still being formed, might have a more profound effect on the developing self than during later adulthood, when the self is more stable and resilient. Negative self-appraisals might constitute a treatment target for early intervention for youths with distressing voices, including those with BPD.
DOI: 10.6084/m9.figshare.12123732.v1
title: pearl river estuary_sediment age

description: model inputs and codes
DOI: 10.23645/epacomptox.12123735
title: Supplemental files for Respirometric Screening and Characterization of Mitochondrial Toxicants Within the ToxCast Phase I and II Chemical Libraries

description: These are the supplemental files for TOXSCI manuscript 19-0578 entitled, “Respirometric Screening and Characterization of Mitochondrial Toxicants Within the ToxCast Phase I and II Chemical Libraries”: Supplemental Figure 1 shows the median fold inhibition for basal (A) and maximal (B) respiration phases for nine test chemicals represented as 18 internally-duplicated samples used to measure intra-assay reproducibility (red dashed lines show threshold used to define bioactivity).<br>Supplemental Figure 2 shows the temporal dose-response plots (median % initial respiration ± mad) for all 243 chemicals tested in Tier 2 RSA screening. <br>Supplemental Figure 3 shows the temporal dose-response plots (median % initial respiration ± mad) for all 149 ETCi chemicals tested in the EFA.<br>Supplemental Table 1 lists five QC metrics calculated using DMSO, fenpyroximate, and 2,4-dinitrophenol controls used to evaluate RSA performance.<br>Supplemental Table 2 lists the 1,042 ToxCast chemicals tested in this study with activity calls for each testing tier, proposed mechanism of mitochondrial toxicity for RSA-actives and the inhibited respiratory complex(es) for putative ETC inhibitors. Maximal test concentrations are in µM excepting those values exceeding 200, which are in µg/µL.<br>Supplemental File A delineates how the respirometric screening assay protocol differs from the commonly-used mitochondrial stress assay protocol and provides a rationale for those differences.
DOI: 10.23645/epacomptox.12123735.v2
title: Supplemental files for Respirometric Screening and Characterization of Mitochondrial Toxicants Within the ToxCast Phase I and II Chemical Libraries

description: These are the supplemental files for TOXSCI manuscript 19-0578 entitled, “Respirometric Screening and Characterization of Mitochondrial Toxicants Within the ToxCast Phase I and II Chemical Libraries”: Supplemental Figure 1 shows the median fold inhibition for basal (A) and maximal (B) respiration phases for nine test chemicals represented as 18 internally-duplicated samples used to measure intra-assay reproducibility (red dashed lines show threshold used to define bioactivity).<br>Supplemental Figure 2 shows the temporal dose-response plots (median % initial respiration ± mad) for all 243 chemicals tested in Tier 2 RSA screening. <br>Supplemental Figure 3 shows the temporal dose-response plots (median % initial respiration ± mad) for all 149 ETCi chemicals tested in the EFA.<br>Supplemental Table 1 lists five QC metrics calculated using DMSO, fenpyroximate, and 2,4-dinitrophenol controls used to evaluate RSA performance.<br>Supplemental Table 2 lists the 1,042 ToxCast chemicals tested in this study with activity calls for each testing tier, proposed mechanism of mitochondrial toxicity for RSA-actives and the inhibited respiratory complex(es) for putative ETC inhibitors. Maximal test concentrations are in µM excepting those values exceeding 200, which are in µg/µL.<br>Supplemental File A delineates how the respirometric screening assay protocol differs from the commonly-used mitochondrial stress assay protocol and provides a rationale for those differences.
DOI: 10.23645/epacomptox.12123735.v1
title: Untitled Item

description: These are the supplemental files for TOXSCI manuscript 19-0578 entitled, “Respirometric Screening and Characterization of Mitochondrial Toxicants Within the ToxCast Phase I and II Chemical Libraries”: Supplemental Figure 1 shows the median fold inhibition for basal (A) and maximal (B) respiration phases for nine test chemicals represented as 18 internally-duplicated samples used to measure intra-assay reproducibility (red dashed lines show threshold used to define bioactivity).<br>Supplemental Figure 2 shows the temporal dose-response plots (median % initial respiration ± mad) for all 243 chemicals tested in Tier 2 RSA screening. <br>Supplemental Figure 3 shows the temporal dose-response plots (median % initial respiration ± mad) for all 149 ETCi chemicals tested in the EFA.<br>Supplemental Table 1 lists five QC metrics calculated using DMSO, fenpyroximate, and 2,4-dinitrophenol controls used to evaluate RSA performance.<br>Supplemental Table 2 lists the 1,042 ToxCast chemicals tested in this study with activity calls for each testing tier, proposed mechanism of mitochondrial toxicity for RSA-actives and the inhibited respiratory complex(es) for putative ETC inhibitors. Maximal test concentrations are in µM excepting those values exceeding 200, which are in µg/µL.<br>Supplemental File A delineates how the respirometric screening assay protocol differs from the commonly-used mitochondrial stress assay protocol and provides a rationale for those differences.