cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.qee62c
title: Occurrence Download

description: A dataset containing 625 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Capparis multiflora, Capparis pubiflora, Capparis sabiifolia, Capparis urophylla, Capparis versicolor)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 625 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022775-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16500707
title: Land Use Intensity Index for Stream Ecosystems (LUIS) datasets for Germany, 2017

description: This dataset provides harmonized, spatially explicit data linking agricultural land use intensity to ecological status in German rivers and streams. Each record represents the functional elementary catchment identifier (ZHYD); Strahler stream order; Water Framework Directive (WFD) ecological status (coded as integers 1–5, mapping to "High", "Good", "Moderate", "Poor", "Bad"); morphological type (natural, artificial, or heavily modified; naturalAWBHMWB); Biological Quality Element (BQE) code (qeCode); conventional agricultural land fraction (ALF); and the hydrologically weighted Land Use Intensity Indices (LUIS N for nitrogen, LUIS P for phosphorus, LUIS Pest for pesticides) as well as the composite LUIS index. LUIS variables are calculated using crop- and region-specific input data, surface connectivity, and precipitation factors as described in the accompanying manuscript. All indices are normalized using min-max scaling across the German national domain for 2017.

This curated minimum dataset enables direct reproduction of the main statistical analyses and figures from the study “A hydrologically informed agricultural land use intensity index to assess the ecological impacts on streams and rivers.” It provides a valuable resource for researchers and policymakers investigating the links between agricultural practices, hydrological connectivity, and stream ecosystem health across scales.
DOI: 10.5281/zenodo.17204506
title: Land Use Intensity Index for Stream Ecosystems (LUIS) datasets for Germany, 2017

description: This dataset provides harmonized, spatially explicit data linking agricultural land use intensity to ecological status in German rivers and streams. Each record represents the functional elementary catchment identifier (ZHYD); Strahler stream order; Water Framework Directive (WFD) ecological status (coded as integers 1–5, mapping to "High", "Good", "Moderate", "Poor", "Bad"); morphological type (natural, artificial, or heavily modified; naturalAWBHMWB); Biological Quality Element (BQE) code (qeCode); conventional agricultural land fraction (ALF); and the hydrologically weighted Land Use Intensity Indices (LUIS N for nitrogen, LUIS P for phosphorus, LUIS Pest for pesticides) as well as the composite LUIS index. LUIS variables are calculated using crop- and region-specific input data, surface connectivity, and precipitation factors as described in the accompanying manuscript. All indices are normalized using min-max scaling across the German national domain for 2017.

This curated minimum dataset enables direct reproduction of the main statistical analyses and figures from the study “A hydrologically informed agricultural land use intensity index to assess the ecological impacts on streams and rivers.” It provides a valuable resource for researchers and policymakers investigating the links between agricultural practices, hydrological connectivity, and stream ecosystem health across scales.
DOI: 10.15468/dl.d4kftb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pleurobrachia striata",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022776-251120083545085/datasets/export for details.
DOI: 10.5281/zenodo.7641814
title: All centralising monoids on the set {0, 1, 2}, including their witnesses

description: This dataset contains code and data to produce a list of all 192 centralising monoids on the set \(\{0,1,2\}\), including a witness for each of them. This gives a computational verification of the classification of centralising monoids published by Machida and Rosenberg in 2012 and 2013. Furthermore, some of the cpp-files and the context files form supplements to the bachelor dissertation of the second-named author. The code and the computed data contained in this upload also supplement the conference article that appeared in ICFCA 2023.


A detailed description of the files in the dataset can be obtained from the file cent_mons3_witn.pdf (the code source for this file is given in cent_mons3_witn.tex).
DOI: 10.5281/zenodo.7641813
title: All centralising monoids on the set {0, 1, 2}, including their witnesses

description: This dataset contains code and data to produce a list of all 192 centralising monoids on the set \(\{0,1,2\}\), including a witness for each of them. This gives a computational verification of the classification of centralising monoids published by Machida and Rosenberg in 2012 and 2013. Furthermore, some of the cpp-files and the context files form supplements to the bachelor dissertation of the second-named author. The code and the computed data contained in this upload also supplement the conference article that appeared in ICFCA 2023.


A detailed description of the files in the dataset can be obtained from the file cent_mons3_witn.pdf (the code source for this file is given in cent_mons3_witn.tex).
DOI: 10.5281/zenodo.17568239
title: Molecular Dynamics Simulation Dataset: Bovine Pancreatic Trypsin Inhibitor (BPTI)

description: This repository contains a 100 ns molecular dynamics trajectory of Bovine Pancreatic Trypsin Inhibitor (BPTI), a canonical model system for protein folding and dynamics studies. The dataset includes the protein-only trajectory extracted from a full solvated simulation, providing a standardized benchmark for methodological development in structural bioinformatics.

Intended UseThis curated protein trajectory is optimized for:



Method development in trajectory analysis and visualization

Benchmarking conformational sampling algorithms

Educational purposes in computational biophysics

Validation of analysis pipelines
DOI: 10.5281/zenodo.17568238
title: Molecular Dynamics Simulation Dataset: Bovine Pancreatic Trypsin Inhibitor (PDB: 6PTI)

description: This repository contains a 100 ns molecular dynamics trajectory of Bovine Pancreatic Trypsin Inhibitor (BPTI), a canonical model system for protein folding and dynamics studies. The dataset includes the protein-only trajectory extracted from a full solvated simulation, providing a standardized benchmark for methodological development in structural bioinformatics.

Intended UseThis curated protein trajectory is optimized for:



Method development in trajectory analysis and visualization

Benchmarking conformational sampling algorithms

Educational purposes in computational biophysics

Validation of analysis pipelines
DOI: 10.15468/dl.mj9cx6
title: Occurrence Download

description: A dataset listing the 23907901 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "Country is United States of America",
 "DatasetKey is one of (iNaturalist Research-grade Observations, The New York Botanical Garden Herbarium (NY), RSA - California Botanic Garden Herbarium, Academy of Natural Sciences of Drexel University, R. L. McGregor Herbarium Vascular Plants Collection, Carnegie Museum of Natural History Herbarium)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset's 23907901 records were derived from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022763-251120083545085/datasets/export for details.
DOI: 10.17026/ar/6yipfn
title: PAN-00027224 - decorative Roman horse gear fitting group A5

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00027224&lt;/p&gt;
description: Modified: 2025-07-31T18:10:20+02:00
DOI: 10.15468/dl.wmv6ha
title: Occurrence Download

description: A dataset containing 408 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CAN.11_1",
 "TaxonKey is Ixodes scapularis"
 ]
}

 The dataset includes 408 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022777-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17755215
title: Molecular Dynamics Simulation Dataset: TrpCage Miniprotein (PDB: 1L2Y)

description: This repository contains a molecular dynamics trajectory of the trp_cage miniprotein (PDB: 1L2Y), a 20-residue engineered protein that folds rapidly and serves as an important model system for protein folding studies [1]. The dataset includes the protein trajectory suitable for analysis of folding dynamics and structural stability.

 

[1] Neidigh, J. W., Fesinmeyer, R. M., & Andersen, N. H. Designing a 20-residue protein. Nature Structural Biology 2002, 9(6):425–430.
DOI: 10.5281/zenodo.17755214
title: Molecular Dynamics Simulation Dataset: TrpCage Miniprotein (PDB: 1L2Y)

description: This repository contains a molecular dynamics trajectory of the trp_cage miniprotein (PDB: 1L2Y), a 20-residue engineered protein that folds rapidly and serves as an important model system for protein folding studies [1]. The dataset includes the protein trajectory suitable for analysis of folding dynamics and structural stability.

 

[1] Neidigh, J. W., Fesinmeyer, R. M., & Andersen, N. H. Designing a 20-residue protein. Nature Structural Biology 2002, 9(6):425–430.
DOI: 10.13140/rg.2.2.14235.53283
title: CAIMI PLAYA GRANDE
DOI: 10.15468/dl.2xau27
title: Occurrence Download

description: A dataset containing 950 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cassiopea andromeda",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 950 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022778-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ptxzxk
title: Occurrence Download

description: A dataset containing 2246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((28.0216 44.07436,27.97867 44.03016,27.98624 43.89062,28.1302 43.8117,28.31583 43.80791,28.38907 43.96639,28.30762 44.12677,28.0216 44.07436))",
 "OccurrenceStatus is Present",
 "Year 1990-2025"
 ]
}

 The dataset includes 2246 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022779-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/akdke1
title: PAN-00172768 - leather pump valve

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00172768&lt;/p&gt;
description: Modified: 2025-09-17T09:33:20+02:00
DOI: 10.25574/27481
title: Chandra X-ray Observatory ObsId 27481

description: Chandra observation of possible nuclear transient in NGC 7793
DOI: 10.25574/27482
title: Chandra X-ray Observatory ObsId 27482

description: Flux Limits on the Nearest Black Hole: Gaia BH1
DOI: 10.15468/dl.fmg5rj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bolinopsis elegans",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022780-251120083545085/datasets/export for details.
DOI: 10.15468/dl.htc6eg
title: Occurrence Download

description: A dataset containing 22166 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Capparis viburnifolia, Capparis yunnanensis, Capparis zeylanica, Caragana arborescens, Caragana korshinskii)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 22166 records from 349 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022781-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17716214
title: The Northern California Current on fire: consequences of a widespread and persistent anomalous pyrosome bloom

description: Data and Code repository for the manuscript titled "The Northern California Current on fire: consequences of a widespread and persistent anomalous pyrosome bloom". Please see the README file for more information.

Abstract:

Marine heatwaves (MHWs) have increased in intensity and duration globally as a result ofsustained carbon emissions. The North Pacific Ocean witnessed multiple strong and prolongedMHWs since 2014 leading to many ecosystem anomalies. Pelagic urochordates (salps andappendicularians) are dominant components of oceanic, low productivity waters globally andhave been studied with some regularity in temperate ecosystems. However, colonial pyrosomesare generally restricted to oceanic tropical seas and have been far less studied than otherurochordate taxa. The subtropical cosmopolitan species, Pyrosoma atlanticum, also called “firebodies’ due to their bioluminescence, has periodically been sampled from the Northeast PacificOcean off Southern California. With the advent of anomalously warm conditions due to thesevere MHW in 2014, P. atlanticum started appearing in the Northern California Current (NCC),north of its known range, and following a strong El Niño in 2016, became the dominantcomponent of pelagic surveys by 2017. These massive blooms impaired commercial fisheriesand contaminated beaches, prompting public concerns. Due to the paucity of information on thisspecies north of its normal range, we compiled existing and new data on broadscale distributions,habitat preferences, feeding ecology and grazing rates, and utilization by higher trophic levels.This information was assimilated into an end-to-end ecosystem model to examine impacts on thepelagic and benthic food webs and human utilization of this system. Since this tropical invadermay become established in the productive coastal ecosystem of the NCC with predicted futurewarming of the North Pacific, understanding its ecology and potential impacts will fill criticalgaps in our knowledge of the importance of this hitherto understudied species.
DOI: 10.5281/zenodo.17716213
title: The Northern California Current on fire: consequences of a widespread and persistent anomalous pyrosome bloom

description: Data and Code repository for the manuscript titled "The Northern California Current on fire: consequences of a widespread and persistent anomalous pyrosome bloom". Please see the README file for more information.

Abstract:

Marine heatwaves (MHWs) have increased in intensity and duration globally as a result ofsustained carbon emissions. The North Pacific Ocean witnessed multiple strong and prolongedMHWs since 2014 leading to many ecosystem anomalies. Pelagic urochordates (salps andappendicularians) are dominant components of oceanic, low productivity waters globally andhave been studied with some regularity in temperate ecosystems. However, colonial pyrosomesare generally restricted to oceanic tropical seas and have been far less studied than otherurochordate taxa. The subtropical cosmopolitan species, Pyrosoma atlanticum, also called “firebodies’ due to their bioluminescence, has periodically been sampled from the Northeast PacificOcean off Southern California. With the advent of anomalously warm conditions due to thesevere MHW in 2014, P. atlanticum started appearing in the Northern California Current (NCC),north of its known range, and following a strong El Niño in 2016, became the dominantcomponent of pelagic surveys by 2017. These massive blooms impaired commercial fisheriesand contaminated beaches, prompting public concerns. Due to the paucity of information on thisspecies north of its normal range, we compiled existing and new data on broadscale distributions,habitat preferences, feeding ecology and grazing rates, and utilization by higher trophic levels.This information was assimilated into an end-to-end ecosystem model to examine impacts on thepelagic and benthic food webs and human utilization of this system. Since this tropical invadermay become established in the productive coastal ecosystem of the NCC with predicted futurewarming of the North Pacific, understanding its ecology and potential impacts will fill criticalgaps in our knowledge of the importance of this hitherto understudied species.
DOI: 10.15468/dl.3nkr4v
title: Occurrence Download

description: A dataset containing 287 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caulerpa scalpelliformis",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 287 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022782-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16943231
title: First record of the xiphosurid Euproops cf. danae from Ireland- A newly discovered specimen from the Pennsylvanian of County Clare, Ireland

description: 1. Project

1.1. Abstract

This data repository project aims to gather the data produced in the course of the description of fossils discovered during fieldwork in the Pennsylvanian of County Clare, Ireland.

1.2. Results





A first dataset is associated to the description of a specimen discovered from the Pennsylvanian of County Clare, Ireland that represents the first record of the xiphosurid Euproops cf. danae in Ireland.



 

2. Dataset

This dataset contains the photographs produced in the course of the preparation of the manuscript “First record of the xiphosurid Euproops cf. danae from Ireland- A newly discovered specimen from the Pennsylvanian of County Clare, Ireland” by Pierre Gueriau and Eamon Doyle.
DOI: 10.5281/zenodo.16943230
title: First record of the xiphosurid Euproops cf. danae from Ireland- A newly discovered specimen from the Pennsylvanian of County Clare, Ireland

description: 1. Project

1.1. Abstract

This data repository project aims to gather the data produced in the course of the description of fossils discovered during fieldwork in the Pennsylvanian of County Clare, Ireland.

1.2. Results





A first dataset is associated to the description of a specimen discovered from the Pennsylvanian of County Clare, Ireland that represents the first record of the xiphosurid Euproops cf. danae in Ireland.



 

2. Dataset

This dataset contains the photographs produced in the course of the preparation of the manuscript “First record of the xiphosurid Euproops cf. danae from Ireland- A newly discovered specimen from the Pennsylvanian of County Clare, Ireland” by Pierre Gueriau and Eamon Doyle.
DOI: 10.17026/ar/n8suen
title: PAN-00149952 - soldered thimble ring, stamp pitted

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00149952&lt;/p&gt;
description: Modified: 2025-09-04T16:34:09+02:00
DOI: 10.17026/dans-zhu-64hc
title: PAN-00003199 - terra sigillata plate type Drag. 18/31 and 31

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00003199&lt;/p&gt;
description: Modified: 2025-09-22T16:57:12+02:00
DOI: 10.15468/dl.wyb5kx
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Claeoderes radulirostris"
 ]
}

 The dataset includes 42 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022783-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7294/30376465
title: Tree planting choices mediate wildfire damage to tropical forest restoration in eastern Madagascar

description: This dataset accompanies the manuscript “Tree planting choices mediate wildfire damage to tropical forest restoration in eastern Madagascar.” Between 2018 and 2023, the NGO Green Again Madagascar (GAM) established 0.25-ha restoration plantings at 46 sites near Toamasina, Madagascar. From 2020–2022, wildfires impacted 15 of these sites; 11 could be rapidly monitored post-fire and form the basis of this dataset. Each monitored site contained four 25×25 m treatment plots varying in (i) planting size (9×9 m island vs. 25×25 m block), (ii) density (1-m vs. 3-m spacing), and (iii) species composition (plots with fire-resilient species planted as an outer border vs. plots without that border).We recorded a rustic fire intensity index (0–7) based on scorching/char of standardized plot and tree markers, a fire severity index (0–4) per tree (leaf/stem scorch/char), tree survival 3–23 months post-fire to allow resprouting, and plot/site covariates (slope, planting age at fire, treatment, planting position within plot—edge vs. interior). Across 2,772 planted trees (27 native species), overall mortality was 75%, with large among-species differences (41–100%). Species composition had the strongest effect: plantings that included fire-resilient border species reduced overall mortality by ~72% relative to comparable dense plantings without those species, while planting size, density, and tree position showed little or no consistent effect on fire behavior or mortality. Fire intensity positively correlated with both severity and mortality.These data support trait-informed species selection for restoration in fire-prone tropical landscapes and document species-level responses (resistance, epicormic/basal resprouting) among poorly studied Malagasy trees.