cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15146/r3qg65
title: Metromates: Newly Infected MSM in SoCal

description: Between February 2009 and May 2012 the NIDA funded Metromates Study was
 conducted at The Los Angeles Lesbian, Gay and Bisexual and Transgender
 Center (LA LGBT Center), a community-based organization providing
 comprehensive health services.
description: We enrolled 328 men seeking HIV testing at the LA LGBT Center
 Sexual Health program longitudinal cohort study who met the following
 criteria: had results from a recent HIV test; at least 18 years of age;
 male; and reported sex with a male partner in the past 12 months. Eligible
 participants provided written informed consent; those who had tested
 HIV-positive (through the sexual health program) provided a specimen for
 testing of recency of infection. Those testing positive were all verified
 as newly diagnosed, with a subset classified as recently infected using
 one of these criteria: a positive test result to RNA nucleic acid
 amplification testing (NAAT) on a specimen negative by rapid HIV antibody
 testing or a result indicative of recent infection from the Vironostika
 detuned assay. The remaining were classified as newly HIV-diagnosed (but
 not newly infected) and 105 were HIV-negative. Men were enrolled for a
 year of behavioral follow-up attempted quarterly but only 55% completed
 any follow-up after enrollment.
DOI: 10.15146/r3v883
title: Data associated with Vandeleest, Beisner et al. (PeerJ, 2016) "Decoupling Social Status and Status Certainty Effects on Health in Macaques: A Network Approach"

description: Although a wealth of literature points to the importance of social factors
 on health, a detailed understanding of the complex interplay between
 social and biological systems is lacking. Social status is one aspect of
 social life that is made up of multiple structural (humans: income,
 education; animals: mating system, dominance rank) and relational
 components (perceived social status, dominance interactions). In a
 nonhuman primate model we use novel network techniques to decouple two
 components of social status, dominance rank (a commonly used measure of
 social status in animal models) and dominance certainty (the relative
 certainty vs. ambiguity of an individual’s status), allowing for a more
 complex examination of how social status impacts health. Data include
 subject ID, demographics, social status indicators, and select health
 outcomes.
description: Behavioral observations to calculate dominance rank and certainty
 were conducted on three outdoor captive groups of rhesus macaques (N=252
 subjects), each group was observed for 5-7 weeks. Dominance rank and
 certainty were calculated using the Perc package in R (Fujii et al., 2015)
 using a network-based approach. Subjects’ general physical health
 (diarrhea) was assessed twice weekly and from these data, we counted the
 total frequency of bouts of diarrhea per subject across the 5-7 week
 observation period. Blood was drawn once to assess biomarkers of
 inflammation (interleukin-6, tumor necrosis factor-alpha, and C-reactive
 protein). Due to the large number of animals, blood was collected in
 batches of ~15 samples, this variable is described in the present dataset
 as SamplingOrder. Serum levels of IL-6 and TNF-α were measured using
 commercially available, species specific Milliplex multi-analyte profiling
 (MAP) reagents purchased from EMD / Millipore (Billerica, MA), and
 utilizing Luminex Xmap technology (Luminex, Austin, TX). Concentrations of
 CRP were determined using a latex particle immunoturbidmetric method on
 the Beckman Coulter AU480 clinical chemistry analyzer. Additional
 methodology is available in Vandeleest, Beisner et al. (2016).
DOI: 10.15146/r3rg6g
title: A Zebrafish Model for Studies on Esophageal Epithelial Biology

description: Mammalian esophagus exhibits a remarkable change in epithelial structure
 during the transition from embryo to adult. However, the molecular
 mechanisms of esophageal epithelial development are not well understood.
 Zebrafish (Danio rerio), a common model organism for vertebrate
 development and gene function, has not previously been characterized as a
 model system for esophageal epithelial development. In this study, we
 characterized a piece of non-keratinized stratified squamous epithelium
 similar to human esophageal epithelium in the upper digestive tract of
 developing zebrafish. Under the microscope, this piece was detectable at
 5dpf and became stratified at 7dpf. Expression of esophageal epithelial
 marker genes (Krt5, P63, Sox2 and Pax9) was detected by
 immunohistochemistry and in situ hybridization. Knockdown of P63, a gene
 known to be critical for esophageal epithelium, disrupted the development
 of this epithelium. With this model system, we found that Pax9 knockdown
 resulted in loss or disorganization of the squamous epithelium, as well as
 down-regulation of the differentiation markers Krt4 and Krt5. In summary,
 we characterized a region of stratified squamous epithelium in the
 zebrafish upper digestive tract which can be used for functional studies
 of candidate genes involved in esophageal epithelial biology.
DOI: 10.15146/r31017
title: Maternal Exercise during Pregnancy Increases BDNF Levels and Cell Numbers in the Hippocampal Formation but Not in the Cerebral Cortex of Adult Rat Offspring

description: Clinical evidence has shown that physical exercise during pregnancy may
 alter brain development and improve cognitive function of offspring.
 However, the mechanisms through which maternal exercise might promote such
 effects are not well understood. The present study examined levels of
 brain-derived neurotrophic factor (BDNF) and absolute cell numbers in the
 hippocampal formation and cerebral cortex of rat pups born from mothers
 exercised during pregnancy. Additionally, we evaluated the cognitive
 abilities of adult offspring in different behavioral paradigms
 (exploratory activity and habituation in open field tests, spatial memory
 in a water maze test, and aversive memory in a step-down inhibitory
 avoidance task). Results showed that maternal exercise during pregnancy
 increased BDNF levels and absolute numbers of neuronal and non-neuronal
 cells in the hippocampal formation of offspring. No differences in BDNF
 levels or cell numbers were detected in the cerebral cortex. It was also
 observed that offspring from exercised mothers exhibited better cognitive
 performance in nonassociative (habituation) and associative (spatial
 learning) mnemonic tasks than did offspring from sedentary mothers. Our
 findings indicate that maternal exercise during pregnancy enhances
 offspring cognitive function (habituation behavior and spatial learning)
 and increases BDNF levels and cell numbers in the hippocampal formation of
 offspring.
DOI: 10.15146/r3d59d
title: Dissolved oxygen and temperature data to estimate stream metabolism

description: This dissolved oxygen and temperature dataset is part of a stream
 metabolism study in the Methow River Basin in North Central Washington
 State. This is a test run using DASH.
description: Dissolved oxygen and temperature was measured using a YSI sonde (Yellow
 Springs, Ohio, USA). Data were logged every 10 minutes. This file has data
 from February 11-21 2014. The sonde was located on in the water on the
 channel's edge of the Lower Chewah River (
DOI: 10.15146/r3np4v
title: IDEA Data API Specification

description: The specification of IDEA Data API.
description: Typing
DOI: 10.5281/zenodo.18393182
title: PEDAGOGICAL APPOROACHES TO TEACHING POP SINGING IN PRIMARY SCHOOL EDUCATION

description: This article examines effective methods of teaching pop (estrada) singing to primary school students. The study highlights the importance of considering the physiological, psychological, and emotional characteristics of children aged 6–10 in the vocal learning process. Special attention is given to game-based learning, imitation, breathing exercises, song selection, and stage performance elements as key pedagogical tools. The article emphasizes the role of the teacher in creating a supportive and motivating environment that ensures vocal health and encourages creativity. The findings demonstrate that properly organized pop singing instruction at an early age contributes not only to the development of vocal skills and musical abilities but also to the overall personal growth, self-confidence, and emotional expressiveness of young learners.
DOI: 10.5281/zenodo.18393183
title: PEDAGOGICAL APPOROACHES TO TEACHING POP SINGING IN PRIMARY SCHOOL EDUCATION

description: This article examines effective methods of teaching pop (estrada) singing to primary school students. The study highlights the importance of considering the physiological, psychological, and emotional characteristics of children aged 6–10 in the vocal learning process. Special attention is given to game-based learning, imitation, breathing exercises, song selection, and stage performance elements as key pedagogical tools. The article emphasizes the role of the teacher in creating a supportive and motivating environment that ensures vocal health and encourages creativity. The findings demonstrate that properly organized pop singing instruction at an early age contributes not only to the development of vocal skills and musical abilities but also to the overall personal growth, self-confidence, and emotional expressiveness of young learners.
DOI: 10.15146/r3201j
title: Data associated with Britten, Thatcher and Caro (PLOS One, 2016). "Zebras and biting flies: quantitative analysis of reflected light from zebra coats in their natural habitat."

description: The images are of 21 scenes containing plains zebras (Equus burchelli)
 taken in their natural habitat in Katavi National Park, Tanzania. Each
 scene was photographed 7 times through a polarizing filter set to angles
 varying by 30 degrees, to allow the reconstruction of the polarized light
 signature emitted from different regions and stripes on the zebras'
 pelage. The scenes contain either individual zebras or small groups of
 zebras against a background of low vegetation dominated by dry grass. The
 images were captured in the dry season, July-September, 2012.
description: A Nikon D50 was used with a Digital Quantaray polarizing filter. The
 images are in 14-bit resolution, RGB mode. Each series was captured using
 full manual control, and the images are in Nikon's raw format,
 containing full metadata. Additional methods can be found in the PLOS One
 paper. The files are stored in a zip-compressed file, and the directory
 'nef_files/' contains the image data, with each of the 21 image
 series in a separate subdirectory. Additional metadata is in the
 'metadata.[xls,csv]' files in the package.
DOI: 10.15146/r39g6f
title: Academic Libraries Follow-Up dataset

description: This is the data set to the Libraries Follow-Up only. This is the planned
 1st follow-up for DataONE Libraries stakeholders
description: Quantitative research,
 
 recoded survey items
DOI: 10.15146/r3pp45
title: Data from Sun, W., Maseyk, K., Lett, C. and Seibt, U. (2016). Litter dominates surface fluxes of carbonyl sulfide (COS) in a Californian oak woodland
DOI: 10.15146/r3tg63
title: Rain Gauge Rainfall Collection Data obtained at 620 Sao Bento Street, Guarulhos, Sao Paulo, Brazil, Zip Code 07070-000, from Aug. 24, 2015 to Nov, 24, 2015

description: The dataset shows the amount of rainfall collected in a rain gauge outside
 my house in Guarulhos, Sao Paulo, Brazil, from Aug. 24,2015 to Nov. 24,
 2015. Data were gathered in order to test the following hypothesis: In
 Guarulhos-SP (Brazil), between the months of August and November
 (08/24/2015-11/24/2015), we will have a slightly fall in the amount of
 rain in comparison with 2014 and 2013 (not together) over the same period.
 Since Brazil has been in an intensive drought over the last two years, I
 suppose that we will not have large amounts of rain.
description: Rainfall data was record at 9:00 AM (UTC-3) every day. Rainfall
 data was recorded in millimeters and it was converted into inches Rain
 gauge was cleaned after recording
DOI: 10.15468/dl.a36em4
title: Occurrence Download

description: A dataset containing 230119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Issue is Coordinate rounded",
 "TaxonKey is Rana"
 ]
}

 The dataset includes 230119 records from 407 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001854-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15146/r36p4t
title: A survey of sensor network use and data management among academic ecologists

description: Automated sensors are ubiquitous in ecological research networks and
 academic-led research – the ‘long-tail’ of ecological research. We
 conducted a survey of academic ecologists to assess the extent of sensor
 use and how data are managed. Respondents were from 135 groups
 representing&gt;1,800 researchers from 92 US universities; these
 collectively match the expenditure, sensor use, and data volumes of
 several large national research networks. Few reported use of metadata and
 workflows and almost 70% archive data locally and not in institutional
 archives, though most recognized the importance of doing so. Most
 indicated that better access to tools and cyber expertise would enhance
 their research. Improving access to such datasets may include improved
 software tools and access to expert knowledge, targeted training,
 high-profile studies that showcase the participation of academic
 researchers in large scale syntheses, and incentives for industry to
 develop, adopt, or adapt technologies that improve data documentation,
 discovery, and sharing.
description: The survey solicited responses between August 2012 and July 2013
 from a diverse pool of &gt;3,800 ecologists within the US-based
 academic ecological research community identified via the LTER,
 Organization of Biological Field Sites (OBFS), and university websites.
 This mixed methods online survey (hosted at SurveyMonkey®; http://www.surveymonkey.com/s/ecodata) was composed of 42 quantitative, categorical, and open-ended questions (included in this data package). The survey was reviewed by the Institutional Review Board (IRB) within the Office of Research and Sponsored Projects (ORSP) at The University of Texas at El Paso and classified as exempt from IRB review. Individual identifying information was not required and if present, was not included in analyses. The questions addressed the following topics: 1. Research group composition, study area locations, funding, and types of 105 research conducted. 2. Data collection methods, system infrastructure, replacement costs, and ideal setup (i.e., the setup that they would like to have if resources were not limited). 3. Affiliations with research networks and perceptions of benefits or disadvantages of such affiliations. 4. Research groups’ methods of managing data and making data available to other researchers, including data and metadata formats, data archive locations, and the use of controlled vocabularies and scientific workflows. 5. Publication record, including time from data collection to publication and journal names. Responses were downloaded on 28 June 2013 and filtered to omit highly incomplete submissions. The remainder were checked for errors and inconsistencies and summarized. Because the survey focused on a specific research community and was not paired with a follow up survey, data were summarized without any further quantitative analysis. The number of responses for each question varied because respondents could skip questions or end the survey at any time.
DOI: 10.15146/r3g591
title: Information Systems Doctoral Dissertations (UK)

description: This is the collection of information systems PhDs
description: All research methodologies are acceptable
DOI: 10.15146/r3kw2j
title: Carbon, nitrogen and tracer 15N recovered in aboveground oak tissues in central coastal Florida

description: This dataset contains data on the amount of carbon, nitrogen and tracer
 15N recovered in aboveground oak tissues (leaves and stems). Data were
 collected as part of the Smithsonian Environmental Research Center's
 elevated CO2 experiment in the subtropical woodland in central coastal
 Florida (Kennedy Space Center). The data reported here are derived from
 several measurements. Stem and leaf biomass was estimated using allometry.
 Stem and leaf tissue samples were also removed and measured for %C, %N,
 and d15N at the Colorado Plateau Stable Isotope Laboratory. The product of
 biomass and element concentration gives carbon or nitrogen mass in g/m2.
 The 15N tracer was applied in June of 1998. Values of 15N mass expressed
 here are in the mass of tracer 15N, after subtracting naturally occurring
 15N.
description: Methods available in Hungate et al, 2013. DOI:
 10.1111/nph.12409
DOI: 10.34740/kaggle/dsv/14642229
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5061/dryad.tv2kb51
title: Data from: Dissecting the genetic architecture of a stepwise infection process

description: How a host fights infection depends on an ordered sequence of steps,
 beginning with attempts to prevent a pathogen from establishing an
 infection, through to steps that mitigate a pathogen’s control of host
 resources, or minimising the damage caused during infection. Yet
 empirically characterising the genetic basis of these steps remains
 challenging. Although each step is likely to have a unique genetic and
 environmental signature, and may, therefore, respond to selection in a
 specific way, events that occur earlier in the infection process can mask
 or overwhelm the contributions of subsequent steps. In this study, we
 dissect the genetic architecture of a stepwise infection process using a
 quantitative trait loci (QTL) mapping approach. We control for variation
 at the first line of defence against a bacterial pathogen and expose
 downstream genetic variability related to the host’s ability to mitigate
 the damage pathogens cause. In our model, the water-flea Daphnia magna, we
 found a single major effect QTL, explaining 64% variance, that is linked
 to the host’s ability to completely block pathogen entry by preventing
 their attachment to the host oesophagus; consistent with the detection of
 this locus in prior studies. In susceptible hosts allowing attachment,
 however, a further 23 QTL, explaining between 5 to 16% variance, were
 mapped to traits related to the expression of disease. The general lack of
 pleiotropy and epistasis for traits related to the different stages of the
 infection process, together with the wide distribution of QTL across the
 genome, highlights the modular nature of a host’s defence portfolio, and
 the potential for each different step to evolve independently. We discuss
 how isolating the genetic basis of individual steps can help resolve
 discussion over the genetic architecture of host resistance.
description: Pheno and genotypes used
 for QTL mappingThe phenotype file
 consisting of line means (i.e. phefile) and genotype file in R/qtl format
 (i.e. genfile).hall-qtl-gen-phen.zipFitness of infected and uninfected individualsData for describing the phenotypic and genetic variability for the estimates of fitness traits underlying pathogen infection and exploitation
DOI: 10.15146/r33w26
title: Stable Isotopologues of Atmospheric Moisture at Wind River Field Station (USA)

description: This dataset includes stable oxygen and hydrogen isotope ratios of
 near-surface water vapor measured at Wind River Field Station, WA, USA
 (45.8205N, 121.9519W, 371m asl). Near-continuous hourly averages are
 available from 3 heights (1m, 10m and 60m above ground) for the entire
 year in 2012. General findings learned from this dataset have been
 published at 2013 AGU Fall meeting (Linking evapotranspiration,
 boundary-layer processes and atmospheric moisture using isotope tracer
 modeling and data, #A51B-0024).
description: High-precision isotope data were made possible by an off-axis
 cavity-enhanced absorption spectroscopy analyzer (Los Gatos Research).
 Data correction and quality control follow the protocol described by Rambo
 et al. (2011) Journal of Atmospheric and Oceanic Technology, 28(11),
 1448-1457, doi:10.1175/JTECH-D-11-00053.1.
DOI: 10.15146/r3mw2v
title: BSEL Shelflist

description: Shelflist for the Brown Science and Engineering Library Weeding Project
DOI: 10.15146/r3rp4s
title: Hitachi S4800
DOI: 10.15146/r3b011
title: Rain and Hail intensity. April 2013

description: Rain and Hail intensity. Cuerda del Pozo. April 2013
DOI: 10.15146/r33k57
title: The Role of Federal Libraries in Research Data Services
DOI: 10.15146/r3s012
title: Rain and Hail intensity. April 2013

description: Rain and Hail intensity. Cuerda del Pozo. April 2013
DOI: 10.15146/r35c7j
title: Wind January 2013

description: Wind Direction and speed in CDP
DOI: 10.5061/dryad.cv35gc3
title: Data from: White matter hyperintensities and CSF AD biomarkers in preclinical Alzheimer’s disease

description: Objective: Recent studies suggest that white matter hyperintensities (WMH)
 on MRI, which primarily reflect small vessel cerebrovascular disease, may
 play a role in the evolution of Alzheimer’s disease (AD). In a
 longitudinal study, we investigated whether WMH promote the progression of
 AD pathology, or alter the association between AD pathology and risk of
 progression from normal cognition to mild cognitive impairment (MCI).
 Methods: Two sets of analyses were conducted. The relationship between
 whole brain WMH load, based on FLAIR MRI images, obtained in initially
 cognitively normal participants (n=274) and time to onset of symptoms of
 MCI (n=60) was examined using Cox regression models. In a subset of the
 participants with both MRI and CSF data (n=204), the interaction of WMH
 load and CSF AD biomarkers was also evaluated. Results: Baseline WMH load
 interacted with CSF t-tau with respect to symptom onset, but not with CSF
 abeta1-42 or p-tau181. WMH volume was associated with time to symptom
 onset of MCI among individuals with low t-tau [HR=1.35, CI=1.06-1.73,
 p=0.013], but not those with high t-tau [HR=0.86,CI=0.56-1.32, p=0.47].
 The rate of change in the CSF biomarkers over time was not associated with
 the rate of change in WMH volumes. Conclusions and Relevance: These
 results suggest that WMH primarily affect the risk of progression when CSF
 measures of neurodegeneration or neuronal injury (as reflected by t-tau)
 are low. However, CSF biomarkers of amyloid and p-tau and WMH appear to
 have largely independent and non-synergistic effects on the risk of
 progression to MCI.
description: Supplementary Materials
 1Scatterplots showing the
 partial correlation between baseline WMH volume and CSF AD biomarkers at
 baseline.
DOI: 10.15146/r3gp49
title: Rain and Hail intensity. January 2013

description: Rain and Hail intensity. Cuerda del Pozo. January 2013