cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25003481
title: Therapeutic effect of <i>Morus alba</i> leaf extract and chlorogenic acid on inhibiting the progression of kidney disease

description: It is well-established that <i>Morus alba</i> and its derivatives have been clinically proven to have antioxidant and anti-inflammatory properties. Although several studies have mentioned the beneficial effect of <i>Morus alba</i> on kidney disorders, the role of <i>Morus alba</i> in CKD still needs to be explored. Thus, this study investigated the effect of <i>Morus alba</i> and chlorogenic acid treatment on renal fibrosis in mice induced with unilateral urethral obstruction (UUO). Twenty-five Balb/c mice were randomly divided into five groups: the sham-operated group, the UUO untreated group, and the UUO treated with enalapril (ENA), <i>Morus alba</i> leaves extract (MLE) and chlorogenic acid (CGA) groups. Urine, blood, and organ samples were collected to evaluate urinalysis, haematology, biochemistry, and histopathology. The result indicated that the UUO group had significantly higher levels of creatinine (<i>p</i> &lt; 0.001) and urea (<i>p</i> &lt; 0.05), as well as hydronephrosis and urine crystal sedimentation (<i>p</i> &lt; 0.05). In comparison to the UUO group, the MLE and CGA groups displayed improved urine profiles, ameliorated anaemia (<i>p</i> &lt; 0.05), and urine crystals (<i>p</i> &lt; 0.05). The administration of CGA also significantly reduced serum creatinine (<i>p</i> &lt; 0.05) and protein-creatinine ratio (UPCr) levels. In addition, MLE and CGA could prevent hydronephrosis and delay renal damage, particularly in the dilation of Bowman’s space, tubular injury, loss of tubular epithelium, and cellular inflammation. In conclusion, <i>Morus alba</i> and CGA had a therapeutic effect in minimising the progression of renal damage. As a result, it can be promoted as a complementary renoprotective product based on natural products, as it has a potentially similar effect to enalapril. <i>Morus alba</i> is a plant that originated in China and has spread worldwide. This plant has been used in many civilisations for animal feed, culinary uses, and even traditional medicine. Indeed, several studies have shown that the leaves of Morus alba contain various phytochemicals that may positively affect health. Morus alba leaves contain a variety of phytochemicals, including phenolic acids, sterols, coumarins, anthocyanins, flavonoids, and flavonols. Several scientific studies have found that certain phytochemicals, particularly chlorogenic acid, have a beneficial effect on renal disease. In fact, Morus alba contains diuretic and free radical scavenging properties that may help prevent kidney damage. Thus, using the mice animal model, this study aimed to provide evidence of the effects of Morus alba leaf extract and chlorogenic acid on CKD symptoms.
DOI: 10.6084/m9.figshare.c.3606977_d4
title: Additional file 4 of The influence of societal individualism on a century of tobacco use: modelling the prevalence of smoking

description: Matlab data files and simulation code. Matlab data files and simulation code used in preparation of this manuscript. (ZIP 21 kb)
DOI: 10.6084/m9.figshare.c.3606971_d3
title: MOESM38 of White adipose tissue reference network: a knowledge resource for exploring health-relevant relations

description: Supplementary material 4 (XLS 95Â kb)
DOI: 10.6084/m9.figshare.c.3606977_d5
title: Additional file 5 of The influence of societal individualism on a century of tobacco use: modelling the prevalence of smoking

description: Proxy data: US population. CSV containing two columns: year (t) and population N pop (t). (CSV 1 kb)
DOI: 10.15468/dl.sd39ub
title: Occurrence Download

description: A dataset containing 726 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedeomyia squamipennis (Lynch Arribálzaga, 1878)"
 ]
}

 The dataset includes 726 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033152-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3607004_d1
title: MOESM4 of Structural and functional analysis of four non-coding Y RNAs from Chinese hamster cells: identification, molecular dynamics simulations and DNA replication initiation assays

description: Additional file 4: Files S1. Y RNAs files in the.pdb format.
DOI: 10.15468/dl.xppqzz
title: Occurrence Download

description: A dataset listing the 39492 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "BasisOfRecord is one of (Human Observation)"
 ]
}

 The dataset's 39492 records were derived from 445 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033141-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3607331_d7
title: Additional file 6: Table S7. of Genome-wide data reveal cryptic diversity and genetic introgression in an Oriental cynopterine fruit bat radiation

description: Population wise assessments of null alleles and deviation from Hardy-Weinberg equilibrium. (XLS 26Â kb)
DOI: 10.6084/m9.figshare.c.3607397_d9
title: Additional file 5: of CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries

description: Table S4. Counts after processing the raw read files with Additional file 17: Supplementary file 4 for PBS1. (XLSX 458 kb)
DOI: 10.6084/m9.figshare.c.3607433_d5
title: Additional file 6: Table S2. of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

description: Pairwise Fst and genetic distance among six ORSC and five O. sativa subpopulations based on GBS-SNP data. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3607433_d6
title: Additional file 8: Table S4 of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

description: Number of accessions included in RC extended haplotype analysis (ORSC N = 81; O. sativa N = 405) (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3607433_d7
title: Additional file 17: Table S8. of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

description: SNP Information for RC Haplotypes. (XLSX 111Â kb)
DOI: 10.6084/m9.figshare.c.3607397_d11
title: Additional file 7: of CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries

description: Table S6. Counts after processing the raw read files with Additional file 17: Supplementary file 4 for TRAIL1. (XLSX 444 kb)
DOI: 10.6084/m9.figshare.c.3607397_d12
title: Additional file 4: of CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries

description: Table S3. File formats, as output of CLD. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3607397_d13
title: Additional file 15: of CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries

description: Supplementary file 2. TRAIL targeting high complexity oligo library. (FASTA 1564 kb)
DOI: 10.6084/m9.figshare.c.3607466_d1
title: Additional file 3: of Identification of protein-damaging mutations in 10 swine taste receptors and 191 appetite-reward genes

description: List of breed-specific variants. This table contains these variants that were present in a single breed at pAAF ≥ 0.1 or present in all breeds at pAAF ≥ 0.5 but absent in one single population. (XLSX 154 kb)
DOI: 10.6084/m9.figshare.c.3607397_d14
title: Additional file 9: of CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries

description: Table S8. Re-annonation of the sgRNA library targeting the TRAIL pathway. (XLSX 1883 kb)
DOI: 10.5281/zenodo.14441187
title: Absolute abundances of calcareous nannofossils at MD96-2077 Natal Valley over the last ~500 kyrs

description: We present a 500-kyr productivity reconstruction of the southwest Indian Ocean (MD96–2077) from calcareous nannofossils.
DOI: 10.5281/zenodo.14441188
title: Absolute abundances of calcareous nannofossils at MD96-2077 Natal Valley over the last ~500 kyrs

description: We present a 500-kyr productivity reconstruction of the southwest Indian Ocean (MD96–2077) from calcareous nannofossils.
DOI: 10.6084/m9.figshare.c.3607829_d2
title: Additional file 1 of Principal components analysis - K-means transposon element based foxtail millet core collection selection method

description: Online Resource 1. Tables with Genotype/Phenotype information (OR1.rar). ∙FoxtailATMap.cvs : Mapped Foxtail AT where 1 = ’ presence’; 0 = ’abscence’. (corresponds to data II). ∙FoxtailGenMap.cvs : Mapped Foxtail Genotype where 1 = ’presence’; 0 = ’abscence’.(corresponds to data I). (RAR 18.2 kb)
DOI: 10.6084/m9.figshare.c.3607829_d3
title: Additional file 2 of Principal components analysis - K-means transposon element based foxtail millet core collection selection method

description: ∙ alleleFrecNRet.m ∙ CCvalidation.m ∙ corrI.m ∙ ChooseInitialCenters.m ∙ dcKMeansB.m ∙ DirectkMeans.m ∙ eigdec.m ∙ FFTCompare.m ∙ FFTForSignals.m ∙ findCCinFC.m ∙ randCC.m ∙ pca2.m ∙ README.m ∙ triu.m (RAR 12.4 kb)
DOI: 10.6084/m9.figshare.c.3607877_d1
title: Additional file 1: of Implementation and acceptability of strategies instituted for engaging men in family planning services in Kibaha district, Tanzania

description: Dataset of Men's Interviews on Male Involvement in Family Planning Services. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3607883_d1
title: Additional file 2: of Ex-vivo and live animal models are equally effective training for the management of a penetrating cardiac injury

description: Raw Data Ex vivo training subjective for submission. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3607898_d1
title: Additional file 1: of Spontaneous mutations in the flhD operon generate motility heterogeneity in Escherichia coli biofilm

description: Complete data set for individual isolates. (XLS 41 kb)
DOI: 10.6084/m9.figshare.28023401
title: RAISING_raw_read.fastq

description: This FASTQ file contains the raw data from the RAISING analysis. The corresponding visualization of this data is presented in Fig. 2 and S2.
DOI: 10.6084/m9.figshare.c.3608345_d3
title: Additional file 2: of Development and validation of a novel single nucleotide polymorphism (SNP) panel for genetic analysis of Blastomyces spp. and association analysis

description: SNP genotyping haplotypes. Raw SNP genotyping data obtained from all isolates, subsumed to 73 unique haplotypes. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3608360_d1
title: MOESM1 of Circulating microRNAs as biomarkers for diffuse myocardial fibrosis in patients with hypertrophic cardiomyopathy

description: Additional file 1. Human plasma/serum miRNA PCR arrayÂ data.
DOI: 10.6084/m9.figshare.c.3608366_d1
title: MOESM7 of Transcriptome profiling of Camelina sativa to identify genes involved in triacylglycerol biosynthesis and accumulation in the developing seeds

description: Additional file 7: Table S7. GO information for the DEGs differentially regulated in Cs-21.
DOI: 10.6084/m9.figshare.c.3608366_d2
title: MOESM3 of Transcriptome profiling of Camelina sativa to identify genes involved in triacylglycerol biosynthesis and accumulation in the developing seeds

description: Additional file 3: Table S3. List of the whole Camelina genes expressed in seed and leaf tissues.
DOI: 10.6084/m9.figshare.c.3608588_d1
title: Additional file 1: of Whole genome annotation and comparative genomic analyses of bio-control fungus Purpureocillium lilacinum

description: Table S1. Statistics of the completeness of the genome based on 248 CEGs. Table S2. Genome size and the number of protein-coding genes in P. lilacinum and the other Hypocreales fungi. Table S3. Repeat elements in the draft genome sequence of P. lilacinum. Table S4. Total number of genes sharing homology with PHI db in the 10 Hypocreales genomes. Table S5. Fisher’s exact test for evaluation of difference in genetic make-up between P. lilacinum and P. chlamydosporia. Table S6. Gene coding for secreted proteins sharing homology with PHI db. Table S7. GPCRs sharing homology with Pth11-like GPCRs in P. lilacinum. Table S8. Genes coding for GPCRs, Histidine kinases, protein kinases, ABC transporters, MFS and CYP450 proteins in P. lilacinum. Table S9. Genes coding for proteases in the P. lilacinum genome. Table S10. Gene coding for serine proteases with homologs in the PHI db. Table S11. Carbohydrate-degrading enzymes arranged by GH family. Table S12. Carbohydrate esterases arranged by CE family. Table S13. Glycosides hydrolase and carbohydrate esterase genes sharing homology with PHI db. Table S14. Secondary metabolites genes and clusters identified by SMURF. Table S15. AntiSMASH based functional annotation of secondary metabolite clusters. Table S16. NaPDoS analysis to detect condensation (C) and ketosynthase (KS) domains. TableS 17. Primer sequences for quantitative real-time PCR analyses. Figure S1. k-mer analysis to predict assembly size of P. lilacinum. (ZIP 201 kb)
DOI: 10.6084/m9.figshare.c.3608591_d1
title: Additional file 1: Table S1 of Pre-announcement of symbiotic guests: transcriptional reprogramming by mycorrhizal lipochitooligosaccharides shows a strict co-dependency on the GRAS transcription factors NSP1 and RAM1

description: a, b, c. Compilation of gene expression responses in M. truncatula wild type A17 (WT), nfp-1 (NFP), dmi3 (DMI3), nsp1-1 (NSP1), and ram1-1 (RAM1) plantlet roots challenged with 10−8 M sMyc-LCOs (sMyc), 10−7 M nsMyc-LCOs (nsMyc), a mixture of 10−8 M sMyc- and 10−7 M nsMyc-LCOs (s/nsMyc), and 10−8 M Nod-LCOs (Nod). Treatment of M. truncatula wild type roots was performed for 6 or 24 h, respectively, whereas mutants were challenged for 6 h. Expression profiles of wild type roots towards Myc- and Nod-LCOs reported by [7] were included to facilitate comparisons to the global responses in the symbiotic mutants mentioned above. Log2 average expression values (Log AveExpr), log2 fold changes (logFC) for each LCO vs. control treatment, and associated p-values are indicated. Log2 fold changes are coloured as follows: red, log2 fold change larger than 1.0; orange, log2 fold change between 0.6 and 1.0; green, log2 fold change below −1.0. Updated annotations for all Medicago probes including correspondences to release 4.0 of the M. truncatula genome and names of known M. truncatula genes are given. The file was split in three parts for reasons of size. (ZIP 43742 kb)
DOI: 10.6084/m9.figshare.c.3608582_d2
title: Additional file 2: Figure S1. of Abiotic predictors and annual seasonal dynamics of Ixodes ricinus, the major disease vector of Central Europe

description: Questing activity of Ixodes ricinus (nymphs and adults) recorded at different near-ground temperatures and relative air humidities during 2005 and 2006. (DOCM 104 kb)
DOI: 10.5258/soton/wp00797
title: Automatic national census pre-Enumeration Areas for Zimbabwe in 2021, version 1.0

description: Automatic national census pre-Enumeration Areas for Zimbabwe in 2021, version 1.0. These data were produced by the WorldPop Research Group at the University of Southampton. This work was part of the Geo-referenced Infrastructure and Demographic Data for Development (GRID3) programme, supported with funding from the Bill & Melinda Gates Foundation and the United Kingdom’s Foreign, Commonwealth & Development Office (OPP1182425). Programme partners included the United Nations Population Fund (UNFPA), the Center for International Earth Science Information Network (CIESIN) within the Earth Institute at Columbia University, and the Flowminder Foundation.
DOI: 10.6084/m9.figshare.c.3608591_d2
title: Additional file 4: Table S4. of Pre-announcement of symbiotic guests: transcriptional reprogramming by mycorrhizal lipochitooligosaccharides shows a strict co-dependency on the GRAS transcription factors NSP1 and RAM1

description: Ten subsets from Additional file 3: Table S3, where genes activated at least 1.5-fold (p
DOI: 10.6084/m9.figshare.c.3608591_d3
title: Additional file 2: Table S2. of Pre-announcement of symbiotic guests: transcriptional reprogramming by mycorrhizal lipochitooligosaccharides shows a strict co-dependency on the GRAS transcription factors NSP1 and RAM1

description: Gene expression responses in M. truncatula wild type A17 (WT), nfp-1 (NFP), dmi3 (DMI3), nsp1-1 (NSP1), and ram1-1 (RAM1) plantlet roots challenged with 10−8 M sMyc-LCOs (sMyc), 10−7 M nsMyc-LCOs (nsMyc), a mixture of 10−8 M sMyc- and 10−7 M nsMyc-LCOs (s/nsMyc), and 10−8 M Nod-LCOs (Nod). Individual sheets contain subsets of genes, as defined in the captions. Log2 average expression values (Log AveExpr), log2 fold changes (logFC) for each LCO vs. control treatment, and associated p-values are indicated. Log2 fold changes are coloured as follows: red, log2 fold change larger than 1.0; orange, log2 fold change between 0.6 and 1.0; green, log2 fold change below -1.0. Updated annotations for all Medicago probes including correspondences to release 4.0 of the M. truncatula genome and names of known M. truncatula genes are given. (XLSX 1289 kb)
DOI: 10.6084/m9.figshare.c.3608627_d1
title: Additional file 2: of Genome comparisons provide insights into the role of secondary metabolites in the pathogenic phase of the Photorhabdus life cycle

description: All protein ortholog families. (XLSX 394Â kb)
DOI: 10.6084/m9.figshare.c.3608624_d2
title: Additional file 4: Table S3. of Evolutionary loss of peroxisomes – not limited to parasites

description: Table of putative peroxisomal enzymes and the prediction of their localization. (XLS 7288 kb)
DOI: 10.6084/m9.figshare.c.3608795_d1
title: Additional file 1: Table S1. of Association between human leukocyte antigen class II and pulmonary tuberculosis due to mycobacterium tuberculosis in Uganda

description: Observed numbers and percentages of human leukocyte antigen Class II HLA-DRB and -DQB antigens in pulmonary TB patients compared to healthy controls. Description of data: Table comparing the observed numbers and the percentages of HLA Class II HLA-DRB and -DQB antigens in pulmonary TB patients and healthy controls. (XLS 32 kb)
DOI: 10.6084/m9.figshare.c.3608813_d1
title: Additional file 2: of Cost analysis of tuberculin skin test and the QuantiFERON-TB Gold In-tube test for tuberculosis screening in a correctional setting in Dallas, Texas, USA

description: Final Cost Analysis Tree. This file contains the structure of the cost analysis tree used for this study, which assumes that repeat testing for LTBI screening is performed annually for individuals who are incarcerated more than once. (XLSX 53Â kb)
DOI: 10.6084/m9.figshare.c.3608807_d2
title: Additional file 3: Table S3. of An advanced bioinformatics approach for analyzing RNA-seq data reveals sigma H-dependent regulation of competence genes in Listeria monocytogenes

description: Significant fragments found with the sliding window approach. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3608873_d1
title: Additional file 16: Table S13. of Preliminary analysis of Psoroptes ovis transcriptome in different developmental stages

description: Allergen genes among the upregulated DEGs. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3608873_d2
title: Additional file 8: Table S6. of Preliminary analysis of Psoroptes ovis transcriptome in different developmental stages

description: DEGseq analysis results for DEGs. (XLSX 110Â kb)
DOI: 10.6084/m9.figshare.c.3608870_d3
title: Additional file 5: of Wheat germ-based protein libraries for the functional characterisation of the Arabidopsis E2 ubiquitin conjugating enzymes and the RING-type E3 ubiquitin ligase enzymes

description: List of primers employed for RING domain mutagenesis. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3609047_d8
title: Additional file 17: Table S9. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

description: Differentially expressed contigs in the P. ulmi PSR-TK strain relative to the HS strain (Benjamini-Hochberg adjusted p-value ≤ 0.05 and │FC│ &gt; 2). (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3609092_d1
title: MOESM1 of The spatial structure of chronic morbidity: evidence from UK census returns

description: Additional file 1. R syntax. This syntax contains commands to download Office for National Statistics internal migrations datasets, process them and compute an interaction matrix of size 348 $$\times$$ Ă  348 following methods $$\cdot$$ Âˇ .Ck and $$\cdot$$ Âˇ .Dk (see Table 1). The output can be used as a spatial weights matrix in spatial analyses.
DOI: 10.6084/m9.figshare.c.3609095_d1
title: Additional file 1: of Comparative genome analysis and genome evolution of members of the magnaporthaceae family of fungi

description: List of genomes analyzed by OrthoMCL. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3609047_d9
title: Additional file 4: Table S2. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

description: BLAST2GO analysis of P. ulmi transcriptome. (XLSX 12041 kb)
DOI: 10.5281/zenodo.14441323
title: Absolute and relative abundances of calcareous nannofossils at ODP1266 Walvis Ridge over the last ~500 kyrs

description: We present a 500-kyr productivity reconstruction of the Walvis Ridge, South Atlantic (ODP1266) from calcareous nannofossils.
DOI: 10.5281/zenodo.14441324
title: Absolute and relative abundances of calcareous nannofossils at ODP1266 Walvis Ridge over the last ~500 kyrs

description: We present a 500-kyr productivity reconstruction of the Walvis Ridge, South Atlantic (ODP1266) from calcareous nannofossils.
DOI: 10.6084/m9.figshare.c.3609140_d1
title: MOESM4 of Confirmation of translatability and functionality certifies the dual endothelin1/VEGFsp receptor (DEspR) protein

description: Additional file 4: Table S1. Protein profile pulled-down (Creative Proteomics). Proteins pulled-down with anti-DEspR mAb 5g12e8 from U87 CSC membranes.
DOI: 10.6084/m9.figshare.c.3609047_d17
title: Additional file 19: File S5. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

description: Transcriptome assembly (CLC Genomics Workbench) of P. ulmi described in this study. (Format: FASTA, examination of this file requires the BioEdit program available at http://www.mbio.ncsu.edu/bioedit/bioedit.html ). (FAS 28273 kb)
DOI: 10.6084/m9.figshare.c.3609047_d18
title: Additional file 16: Table S8. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

description: The number of mapped RNA reads per contig for both P. ulmi strains (HS and PSR-TK). Mapped reads were counted using htseq-count, included in the HTSeq python package [92]. (XLSX 2544 kb)
DOI: 10.15468/dl.xbjdtg
title: Occurrence Download

description: A dataset containing 3000 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anadara tuberculosa (G.B.Sowerby I, 1833)"
 ]
}

 The dataset includes 3000 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033153-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14441205
title: Data and code for paper: "Velocity as an overlooked driver in the echolocation behaviour of aerial hawking vespertilionid bats"

description: Data and code to plot figures 1 to 4 of the manuscript. Further information and data is available upon request