cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21251515
title: Additional file 8 of Single-cell analysis of immune cell transcriptome during HIV-1 infection and therapy

description: Additional file 8. Table S11: Genes differentially expressed between HIV-1-treated compared to seronegative CD4+ T cells.
DOI: 10.6084/m9.figshare.21251515.v1
title: Additional file 8 of Single-cell analysis of immune cell transcriptome during HIV-1 infection and therapy

description: Additional file 8. Table S11: Genes differentially expressed between HIV-1-treated compared to seronegative CD4+ T cells.
DOI: 10.6084/m9.figshare.21251521
title: Additional file 9 of Single-cell analysis of immune cell transcriptome during HIV-1 infection and therapy

description: Additional file 9. Table S12: Genes differentially expressed between HIV-1-treated compared to seronegative CD8+ T cells.
DOI: 10.6084/m9.figshare.21251521.v1
title: Additional file 9 of Single-cell analysis of immune cell transcriptome during HIV-1 infection and therapy

description: Additional file 9. Table S12: Genes differentially expressed between HIV-1-treated compared to seronegative CD8+ T cells.
DOI: 10.6084/m9.figshare.21251527
title: Additional file 1 of Fleas from the Silk Road in Central Asia: identification of Ctenocephalides canis and Ctenocephalides orientis on owned dogs in Uzbekistan using molecular identification and geometric morphometrics

description: Additional file 1: Table S1. Table showing the prevalence of infested dogs. Table S2. The number of examined and positive dogs regarding their sex. Table S3. The number of examined and positive dogs regarding their age. Table S4. The number of dogs infested with C. canis from each of the locations. Table S5. The number of dogs infested with C. orientis from each of the locations. Table S6. The number of dogs infested with P. irritans from each of the locations. Table S7. The number of dogs infested with unidentified fleas from each of the locations. Table S8. Number of infested dogs in each location. Table S9. Species of fleas for each of the age groups. Table S10. The sex of the identified fleas.
DOI: 10.6084/m9.figshare.21251527.v1
title: Additional file 1 of Fleas from the Silk Road in Central Asia: identification of Ctenocephalides canis and Ctenocephalides orientis on owned dogs in Uzbekistan using molecular identification and geometric morphometrics

description: Additional file 1: Table S1. Table showing the prevalence of infested dogs. Table S2. The number of examined and positive dogs regarding their sex. Table S3. The number of examined and positive dogs regarding their age. Table S4. The number of dogs infested with C. canis from each of the locations. Table S5. The number of dogs infested with C. orientis from each of the locations. Table S6. The number of dogs infested with P. irritans from each of the locations. Table S7. The number of dogs infested with unidentified fleas from each of the locations. Table S8. Number of infested dogs in each location. Table S9. Species of fleas for each of the age groups. Table S10. The sex of the identified fleas.
DOI: 10.6084/m9.figshare.21251539
title: Additional file 1 of Resveratrol promotes liver cell survival in mice liver-induced ischemia-reperfusion through unfolded protein response: a possible approach in liver transplantation

description: Additional file 1: Figure 1S. The effect of resveratrol on the serum ALT and AST levels after I/R. Resveratrol was injected into the tail vein of the mouse 5 minutes before reperfusion. The mice’s underwent 1 hour of ischemia and were sacrificed after 3 hours of reperfusion (I/R). Data are expressed as mean ± SD. According to the Tukey post-hoc test used for the comparison between groups, the groups with the same superscript letters did not have significant differences when α = 0.05 (p ≥ .05). Thus, various letters show considerable differences (p &lt;0.05). Figure 2S. The impact of resveratrol on the expression levels of GRP78, PERK, ATF6α, CHOP and XBP1 after I/R. Sham-operated group, I/R, DMSO, 0.02, 0.2 and 2. The mice’s were sacrificed after 1 hour of ischemia and reperfusion (I/R) for 3 hours. Data are expressed as mean ± SD. One-way analysis of variance is used to compare the groups with the same superscript letters, which are not significantly different when α = 0.05 (p ≥ 0.05). However, various letters show considerable differences (p &lt;0.05). Figure 4S. Evaluation of the effect of resveratrol on the liver injury after I/R by histopathological analysis. Sham-operated group with normal liver architecture (A). In mice’s in the IR and IR + DMSO groups (B and C), obvious sinusoidal congestion, vacuolation of the hepatocytes (thin arrow), and focal parenchyma inflammation (thick arrow) were obvious. Mice’s with mild sinusoidal dilation received resveratrol at 0.02 and 0.2 mg/kg. Abnormal histopathological changes in the resveratrol group (D and E) were significantly improved. A higher dose (2 mg / kg) of resveratrol did not have a significant protective effect on the treatment of I / R injury in mice’s (F).
DOI: 10.6084/m9.figshare.21251539.v1
title: Additional file 1 of Resveratrol promotes liver cell survival in mice liver-induced ischemia-reperfusion through unfolded protein response: a possible approach in liver transplantation

description: Additional file 1: Figure 1S. The effect of resveratrol on the serum ALT and AST levels after I/R. Resveratrol was injected into the tail vein of the mouse 5 minutes before reperfusion. The mice’s underwent 1 hour of ischemia and were sacrificed after 3 hours of reperfusion (I/R). Data are expressed as mean ± SD. According to the Tukey post-hoc test used for the comparison between groups, the groups with the same superscript letters did not have significant differences when α = 0.05 (p ≥ .05). Thus, various letters show considerable differences (p &lt;0.05). Figure 2S. The impact of resveratrol on the expression levels of GRP78, PERK, ATF6α, CHOP and XBP1 after I/R. Sham-operated group, I/R, DMSO, 0.02, 0.2 and 2. The mice’s were sacrificed after 1 hour of ischemia and reperfusion (I/R) for 3 hours. Data are expressed as mean ± SD. One-way analysis of variance is used to compare the groups with the same superscript letters, which are not significantly different when α = 0.05 (p ≥ 0.05). However, various letters show considerable differences (p &lt;0.05). Figure 4S. Evaluation of the effect of resveratrol on the liver injury after I/R by histopathological analysis. Sham-operated group with normal liver architecture (A). In mice’s in the IR and IR + DMSO groups (B and C), obvious sinusoidal congestion, vacuolation of the hepatocytes (thin arrow), and focal parenchyma inflammation (thick arrow) were obvious. Mice’s with mild sinusoidal dilation received resveratrol at 0.02 and 0.2 mg/kg. Abnormal histopathological changes in the resveratrol group (D and E) were significantly improved. A higher dose (2 mg / kg) of resveratrol did not have a significant protective effect on the treatment of I / R injury in mice’s (F).
DOI: 10.6084/m9.figshare.12997273.v2
title: Additional file 2 of miR-146a-5p impairs melanoma resistance to kinase inhibitors by targeting COX2 and regulating NFkB-mediated inflammatory mediators

description: Additional file 1: Supplementary Table S1. List of used antibodies and molecular probes. Supplementary Table S2. Differentially expressed miR between cell lines with acquired resistance to vemurafenib and their sensitive counterparts. Supplementary Table S3. Genes directly targeted by miR-146a among the NFkB-regulated genes differentially expressed in LM16R/LM16 dataset (GSE68841). Supplementary Table S4. Characteristics of patients treated with vemurafenib and their matched pre- and post-treatment melanoma metastasis (GSE141484).
DOI: 10.6084/m9.figshare.12997273.v1
title: Additional file 2 of miR-146a-5p impairs melanoma resistance to kinase inhibitors by targeting COX2 and regulating NFkB-mediated inflammatory mediators

description: Additional file 1: Supplementary Table S1. List of used antibodies and molecular probes. Supplementary Table S2. Differentially expressed miR between cell lines with acquired resistance to vemurafenib and their sensitive counterparts. Supplementary Table S3. Genes directly targeted by miR-146a among the NFkB-regulated genes differentially expressed in LM16R/LM16 dataset (GSE68841). Supplementary Table S4. Characteristics of patients treated with vemurafenib and their matched pre- and post-treatment melanoma metastasis (GSE141484).
DOI: 10.6084/m9.figshare.21251546
title: Additional file 2 of Deep multiview learning to identify imaging-driven subtypes in mild cognitive impairment

description: Additional file 2: Table S1.Results for genetic association analysis in Fig. 9 sorted by chromosome number.Thresholding at p= 0.05 with FDR correction, only SNPs that are significant in at least one case control associationtest are included and only p-values for significant results are recorded. Mapped gene(s) for each SNP are shown asthey are recorded in GWAS Catalog - SNPs in multiple genes are separated by comma, interactions are separated by”x”, and upstream anddownstream genes are separated by a hyphen for intergenic SNPs.
DOI: 10.6084/m9.figshare.21251546.v1
title: Additional file 2 of Deep multiview learning to identify imaging-driven subtypes in mild cognitive impairment

description: Additional file 2: Table S1.Results for genetic association analysis in Fig. 9 sorted by chromosome number.Thresholding at p= 0.05 with FDR correction, only SNPs that are significant in at least one case control associationtest are included and only p-values for significant results are recorded. Mapped gene(s) for each SNP are shown asthey are recorded in GWAS Catalog - SNPs in multiple genes are separated by comma, interactions are separated by”x”, and upstream anddownstream genes are separated by a hyphen for intergenic SNPs.
DOI: 10.6084/m9.figshare.12997273
title: Additional file 2 of miR-146a-5p impairs melanoma resistance to kinase inhibitors by targeting COX2 and regulating NFkB-mediated inflammatory mediators

description: Additional file 1: Supplementary Table S1. List of used antibodies and molecular probes. Supplementary Table S2. Differentially expressed miR between cell lines with acquired resistance to vemurafenib and their sensitive counterparts. Supplementary Table S3. Genes directly targeted by miR-146a among the NFkB-regulated genes differentially expressed in LM16R/LM16 dataset (GSE68841). Supplementary Table S4. Characteristics of patients treated with vemurafenib and their matched pre- and post-treatment melanoma metastasis (GSE141484).
DOI: 10.6084/m9.figshare.21251615
title: Additional file 2 of Genomic data integration and user-defined sample-set extraction for population variant analysis

description: Additional file 2. Example of transformed metadata: In this .xlsx (MS Excel) file, we list all the output metadata categories generated for each sample from the transformation of the 1KGP input datasets. The output metadata include information collected from all the four 1KGP metadata files considered. Some categories are not reported in the source metadata files—they are identified by the label manually_curated__...—and were added by the developed pipeline to store technical details (e.g., download date, the md5 hash of the source file, file size, etc.) and information derived from the knowledge of the source, such as the species, the processing pipeline used in the source and the health status. For every information category, the table reports a possible value. The third column (cardinality &gt; 1) tells whether the same key can appear multiple times in the output GDM metadata file. This is used to represent multi-valued metadata categories; for example, in a GDM metadata file, the key manually_curated__chromosome appears once for every chromosome mutated by the variants of the sample.
DOI: 10.6084/m9.figshare.21251615.v1
title: Additional file 2 of Genomic data integration and user-defined sample-set extraction for population variant analysis

description: Additional file 2. Example of transformed metadata: In this .xlsx (MS Excel) file, we list all the output metadata categories generated for each sample from the transformation of the 1KGP input datasets. The output metadata include information collected from all the four 1KGP metadata files considered. Some categories are not reported in the source metadata files—they are identified by the label manually_curated__...—and were added by the developed pipeline to store technical details (e.g., download date, the md5 hash of the source file, file size, etc.) and information derived from the knowledge of the source, such as the species, the processing pipeline used in the source and the health status. For every information category, the table reports a possible value. The third column (cardinality &gt; 1) tells whether the same key can appear multiple times in the output GDM metadata file. This is used to represent multi-valued metadata categories; for example, in a GDM metadata file, the key manually_curated__chromosome appears once for every chromosome mutated by the variants of the sample.
DOI: 10.6084/m9.figshare.21251626
title: Additional file 2 of Metformin regulates multiple signaling pathways within castration-resistant human prostate cancer cells

description: Additional file 2.
DOI: 10.6084/m9.figshare.21251626.v1
title: Additional file 2 of Metformin regulates multiple signaling pathways within castration-resistant human prostate cancer cells

description: Additional file 2.
DOI: 10.6084/m9.figshare.21251644
title: Additional file 2 of A blood DNA methylation biomarker for predicting short-term risk of cardiovascular events

description: Additional file 2. Supplementary Tables S1, S2, and S3.
DOI: 10.6084/m9.figshare.21251644.v1
title: Additional file 2 of A blood DNA methylation biomarker for predicting short-term risk of cardiovascular events

description: Additional file 2. Supplementary Tables S1, S2, and S3.
DOI: 10.6084/m9.figshare.21251660
title: Additional file 1 of Whipworm secretions and their roles in host-parasite interactions

description: Additional file 1: Table S1. Summary of papers describing the protein, RNA and metabolite profiles of T. muris and T. suis E/S and EVs. The reference for each study is included for ease of locating these data sets.
DOI: 10.6084/m9.figshare.21251660.v1
title: Additional file 1 of Whipworm secretions and their roles in host-parasite interactions

description: Additional file 1: Table S1. Summary of papers describing the protein, RNA and metabolite profiles of T. muris and T. suis E/S and EVs. The reference for each study is included for ease of locating these data sets.
DOI: 10.6084/m9.figshare.20412051
title: Reaction of Thiosulfate Dehydrogenase with a Substrate Mimic Induces Dissociation of the Cysteine Heme Ligand Giving Insight into the Mechanism of Oxidative Catalysis

description: Data from Mass Spectrometry, Electronic Absorbance Spectroscopy, Magnetic Circular Dichroism (MCD) Spectroscopy and Protein Film Electrochemistry (PFE) in studies of the reaction between sulfite and the diheme thiosulfate dehydrogenase from <em>Campylobacter jejuni</em>. These data sets are associated with the publication by Jenner et in the Journal of the American Chemical Society DOI 10.1021/jacs.2c06062
DOI: 10.6084/m9.figshare.20412051.v1
title: Reaction of Thiosulfate Dehydrogenase with a Substrate Mimic Induces Dissociation of the Cysteine Heme Ligand Giving Insight into the Mechanism of Oxidative Catalysis

description: Data from Mass Spectrometry, Electronic Absorbance Spectroscopy, Magnetic Circular Dichroism (MCD) Spectroscopy and Protein Film Electrochemistry (PFE) in studies of the reaction between sulfite and the diheme thiosulfate dehydrogenase from <em>Campylobacter jejuni</em>. These data sets are associated with the publication by Jenner et in the Journal of the American Chemical Society DOI 10.1021/jacs.2c06062
DOI: 10.6084/m9.figshare.21251656
title: Additional file 1 of Ethnic differences between South Asians and White Caucasians in cardiovascular disease-related mortality in developed countries: a systematic literature review

description: Additional file 1. a. PRISMA 2020 Checklist. b. PRISMA 2020 abstract checklist.
DOI: 10.6084/m9.figshare.21251656.v1
title: Additional file 1 of Ethnic differences between South Asians and White Caucasians in cardiovascular disease-related mortality in developed countries: a systematic literature review

description: Additional file 1. a. PRISMA 2020 Checklist. b. PRISMA 2020 abstract checklist.
DOI: 10.6084/m9.figshare.21251675
title: Additional file 1 of Real-world data on breast pathologic complete response and disease-free survival after neoadjuvant chemotherapy for hormone receptor-positive, human epidermal growth factor receptor-2-negative breast cancer: a multicenter, retrospective study in China

description: Additional file 1: Figure S1. Significant differences were observed in DFS. Figure S2A. No significant differences were observed in DFS. Figure S2B no significant differences were observed in OS.
DOI: 10.6084/m9.figshare.21251675.v1
title: Additional file 1 of Real-world data on breast pathologic complete response and disease-free survival after neoadjuvant chemotherapy for hormone receptor-positive, human epidermal growth factor receptor-2-negative breast cancer: a multicenter, retrospective study in China

description: Additional file 1: Figure S1. Significant differences were observed in DFS. Figure S2A. No significant differences were observed in DFS. Figure S2B no significant differences were observed in OS.
DOI: 10.6084/m9.figshare.21251684
title: Additional file 2 of Distribution and diversity of ROS-generating enzymes across the animal kingdom, with a focus on sponges (Porifera)

description: Additional file 2. Table displaying total number of sequences identified within the genomes of each metazoan species based on the presence of characteristic domains for NOX, CuZnSOD, and MnSOD proteins.
DOI: 10.6084/m9.figshare.21251684.v1
title: Additional file 2 of Distribution and diversity of ROS-generating enzymes across the animal kingdom, with a focus on sponges (Porifera)

description: Additional file 2. Table displaying total number of sequences identified within the genomes of each metazoan species based on the presence of characteristic domains for NOX, CuZnSOD, and MnSOD proteins.
DOI: 10.6084/m9.figshare.21251687
title: Additional file 3 of Distribution and diversity of ROS-generating enzymes across the animal kingdom, with a focus on sponges (Porifera)

description: Additional file 3. Output from DeepLoc-2.0 analysis predicting subcellular localisation for identified CuZnSOD and MnSOD proteins.
DOI: 10.6084/m9.figshare.21251687.v1
title: Additional file 3 of Distribution and diversity of ROS-generating enzymes across the animal kingdom, with a focus on sponges (Porifera)

description: Additional file 3. Output from DeepLoc-2.0 analysis predicting subcellular localisation for identified CuZnSOD and MnSOD proteins.
DOI: 10.6084/m9.figshare.21251690
title: Additional file 4 of Distribution and diversity of ROS-generating enzymes across the animal kingdom, with a focus on sponges (Porifera)

description: Additional file 4. Output from TargetP-2.0 analysis predicting presence of signal peptide target region.
DOI: 10.6084/m9.figshare.21251690.v1
title: Additional file 4 of Distribution and diversity of ROS-generating enzymes across the animal kingdom, with a focus on sponges (Porifera)

description: Additional file 4. Output from TargetP-2.0 analysis predicting presence of signal peptide target region.
DOI: 10.6084/m9.figshare.21251756
title: Additional file 1 of Meta-transcriptomic comparison of two sponge holobionts feeding on coral- and macroalgal-dissolved organic matter

description: Additional file 1.
DOI: 10.6084/m9.figshare.21251756.v1
title: Additional file 1 of Meta-transcriptomic comparison of two sponge holobionts feeding on coral- and macroalgal-dissolved organic matter

description: Additional file 1.
DOI: 10.6084/m9.figshare.21251762
title: Additional file 2 of Meta-transcriptomic comparison of two sponge holobionts feeding on coral- and macroalgal-dissolved organic matter

description: Additional file 2.
DOI: 10.6084/m9.figshare.21251762.v1
title: Additional file 2 of Meta-transcriptomic comparison of two sponge holobionts feeding on coral- and macroalgal-dissolved organic matter

description: Additional file 2.
DOI: 10.5281/zenodo.6862126
title: R codes for plant genetic diversity effects on trophic groups and interactions

description: R codes for plant genetic diversity effects on trophic groups and interactions
DOI: 10.5281/zenodo.6862125
title: R codes for plant genetic diversity effects on trophic groups and interactions

description: R codes for plant genetic diversity effects on trophic groups and interactions
DOI: 10.5281/zenodo.7127620
title: R codes for plant genetic diversity effects on trophic groups and interactions

description: R codes for plant genetic diversity effects on trophic groups and interactions
DOI: 10.6084/m9.figshare.21251400
title: SupplementaryTable_S8.xlsx

description: <em>B. ceti</em> and <em>B. pinnipedialis</em> annotated prophages sequences according to the PHASTER web server.
DOI: 10.6084/m9.figshare.21251400.v1
title: SupplementaryTable_S8.xlsx

description: <em>B. ceti</em> and <em>B. pinnipedialis</em> annotated prophages sequences according to the PHASTER web server.
DOI: 10.6084/m9.figshare.21251892
title: hnscc

description: hnscc_primary data
DOI: 10.6084/m9.figshare.21251892.v1
title: hnscc

description: hnscc_primary data
DOI: 10.25921/ghqr-rz83
title: EM2040 Water Column Sonar Data Collected During NF2105
DOI: 10.22008/fk2/ibhizl/ph3rmy
title: GeologicalMapofGreenland_G100_Pannertooq_72v2s.pdf

description: :unav
DOI: 10.6084/m9.figshare.20453658.v2
title: Development of a multiplicative model to explore how biological nitrogen fixation responses to multiple edaphic factors in paddy soils.

description: Various sole edaphic factor has been screened as controlling factor for paddy biological nitrogen fixation (BNF), however, no single factor can interpret different results from different experiments. Paddy BNF might be influenced by several factors simultaneously at various degrees, but we still lack a model to predict BNF as a function of multiple edaphic factors. Developing this model will help us to estimate BNF based on soil properties and improve policy decisions to enhance paddy BNF. In this paper, 27 paddy soil samples with different soil properties were collected from the southwest to the northeast in China. These soils with rice plantations were incubated for 77 days in an airtight, transparent, and <sup>15</sup>N<sub>2</sub> enriched growth chamber to measure BNF. Results showed that BNF amounts ranged from 0.66 to 12.3 kg ha<sup>-1</sup> and had a lognormal distribution. A multiplicative model was developed, the R code and raw data were deposited in this project. This multiplicative model could explain 86% variance of the BNF in various soils. In each site, the controlling factors were screened and corresponding measures to enhance BNF were proposed. Our study provided a systematic framework on how BNF responded to a range of edaphic factors simultaneously in paddy soils, and this work might also give inspiration for the study of other ecological functions.
DOI: 10.22008/fk2/pgsmjh/i3m8kb
title: GeologicalMapofGreenland_G100_Nuugatsiaq_71v2n.pdf

description: :unav
DOI: 10.5281/zenodo.7124287
title: Data supplementing doi.org/10.1371/journal.pone.0161267

description: This dataset complements the peer- reviewed article https://doi.org/10.1371/journal.pone.0161267
DOI: 10.5281/zenodo.7124286
title: Data supplementing doi.org/10.1371/journal.pone.0161267

description: This dataset complements the peer- reviewed article https://doi.org/10.1371/journal.pone.0161267
DOI: 10.22008/fk2/07oykx/arsisu
title: GeologicalMapofGreenland_G100_Maarmorilik_71v2s.pdf

description: :unav