cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7280/d1x394
title: Beach wrack ecology at Crystal Cove State Park

description: Crystal Cove State Park (CCSP) is one of few beaches in southern
 California that does not remove beach wrack. Beach wrack, marine organic
 material deposited from other ecosystems, includes algae, seagrass, marine
 phytoplankton, and carrion and is the key nutrient subsidy to this highly
 dynamic habitat. Many invasive brown algae species from the genus
 Sargassum have in some locations outcompeted and replaced native kelp
 offshore, potentially affecting wrack communities. Anthropogenic impacts
 such as oil spills, trash pollution and mechanical grooming also disrupt
 shoreline communities. This paper examines spatiotemporal patterns of
 wrack deposition, Sargassum presence, avian biodiversity and wrack
 pollutants at CCSP. Study design included randomized belt transects
 extending from the terrestrial vegetation line to the swash zone. Wrack
 piles were assessed for abundance, species composition, dominance, volume,
 weight, desiccation and pollutant presence from November 2021 to April
 2022. Wrack abundance varied spatially and temporally, however, Sargassum
 abundance indicated no significant trends. Seagrass abundance varied
 spatially but not temporally. Five minute timed bird surveys were
 conducted at each survey location to examine patterns in avian presence.
 Initiating a long-term wrack monitoring program at CCSP will position the
 park to guide long-term management decisions regarding invasive species
 management and wrack conservation.  
description: Our study site was divided as follows:
 Treasure Cove, Pelican Point, Scotchman’s Cove, Reef Point, and Moro. Each
 subzone was surveyed at regular intervals once per month. We created five
 random, five-meter long belts running down towards the water from a main
 perpendicular 100m primary transect.  For each pile within the belts,
 abundance data was collected by measuring length/width, noting trash
 and/or oil, and determining which species are present and most abundant.
 Three representative piles were then split up by species and measured for
 weight, volume, and desiccation. Using bird identification guides, bird
 surveys were also conducted to monitor what species and how many were
 utilizing wrack. Bird abundance and diversity was documented by
 guild. Data was analyzed utilizing two software programs: RStudio and ArcGIS. Maps were created using GPS data from location collection instruments and data collected from surveys.
DOI: 10.5061/dryad.dz08kps0g
title: Expanded distribution and predicted suitable habitat for the critically endangered yellow-tailed woolly monkey (Lagothrix flavicauda) in Peru

description: The Tropical Andes Biodiversity Hotspot holds a remarkable number of
 species at risk of extinction due to anthropogenic habitat loss, hunting
 and climate change. One of these species, the Critically Endangered
 yellow-tailed woolly monkey (Lagothrix flavicauda), was recently sighted
 in Junín region, 206 kilometres south of its previously known
 distribution. The range extension, combined with continued habitat loss,
 calls for a re-evaluation of the species’ distribution and available
 suitable habitat. Here, we present novel data from surveys at 53 sites in
 the regions of Junín, Cerro de Pasco, Ayacucho and Cusco. We encountered
 L. flavicauda at 9 sites, all in Junín, and the congeneric L. l. tschudii
 at 20 sites, but never in sympatry. Using these new localities along with
 all previous geographic localities for the species, we made predictive
 Species Distribution Models based on Ecological Niche Modelling using a
 generalized linear model and maximum entropy. Each model incorporated
 bioclimatic variables, forest cover, vegetation measurements, and
 elevation as predictor variables. Model evaluation showed &gt;80%
 accuracy for all measures. Precipitation was the strongest predicter of
 species presence. Habitat suitability maps illustrate potential corridors
 for gene flow between the southern and northern populations, although much
 of this area is inhabited by L. l. tschudii. An analysis of the current
 protected area (PA) network showed ~47% of remaining suitable habitat is
 unprotected. With this, we suggest priority areas for new protected areas
 or expansions to existing reserves that would conserve potential corridors
 between L. flavicauda populations. Further surveys and characterization of
 the distribution in intermediate areas, combined with studies on genetic
 flow, are still needed to protect this species.
description: Presence data was collected through a literature search of
 all <em>L. flavicauda</em> localities since 2010. Prediction
 results are from 1) a generalized linear model produced in R and 2) MaxEnt
 Programming Software (v. 3.4.4).
DOI: 10.5061/dryad.7wm37pvwn
title: Altitudinal dispersal process drives community assembly of montane small mammals

description: Montane small mammals are subjected to strong forces of dispersal
 limitation and habitat filtering that mainly operate on their community
 structures along the altitudinal direction. However, so far little is
 known about the relative contributions of dispersal and niche processes to
 their community assembly. By applying the newly-proposed PER-SIMPER/DNCI
 (dispersal–niche continuum index) framework to small mammal occurrence
 data collected from 21 extensive altitudinal gradients, we quantitatively
 assess the relative importance of dispersal and niche processes on
 mammalian community assembly in a large mountainous region of southwest
 China. We compared the pairwise DNCI values among assemblages from low,
 middle, and high altitudinal zones and overall DNCI values between glires
 and insectivores that differ in dispersal abilities to test three explicit
 (altitudinal connectivity, environmental difference, and dispersal
 ability) hypotheses. The overall DNCI values for all small mammal species
 combined (-12.7 ± 0.4, 90 species), glires (-12.8 ± 0.5, 56 species) and
 insectivores (-13.5 ± 1.4, 34 species) values were all negative, while
 insectivores showed a lower value than glires. For both all species
 combined and glires, we found a lower pairwise DNCI value between the low
 and high altitudinal zones than that between the other two pairs of
 altitudinal zones. Our study indicated that altitudinal dispersal process
 dominates the taxonomic composition of small mammal assemblages in this
 region. Importantly, the results reinforced the idea that community
 structures of less vagile taxa are more subjected to dispersal limitation,
 yet another idea that assemblages from further altitudinal areas are more
 differentiated by dispersal process was only supported in glires and all
 species combined. Community biologists should therefore pay attention to
 recent climate-induced upward range shifts by montane species, which may
 dramatically alter their community structures in different altitudinal
 zones through dynamics of immigration and mountaintop extinction.
description: This dataset is an integrated one based on montane small
 mammal trapping data collected between 1981 and 2018 in the mountainous region of southwest China.
 Small mammals including glires (mammals belonging to the orders of
 Rodentia and Lagomorpha) and insectivores (order Eulipotyphla) were
 surveyed based on consistent sampling techniques (line transects, quadrats
 and trap nights) along 21 elevational
 gradients.
DOI: 10.5061/dryad.3j9kd51mq
title: A monograph of Aspergillus section Candidi

description: Aspergillus section Candidi encompasses white- or yellow-sporulating
 species mostly isolated from indoor and cave environments, food, feed,
 clinical material, soil and dung. Their identification is non-trivial due
 to largely uniform morphology. This study aims to re-evaluate the species
 boundaries in the section Candidi and present an overview of all existing
 species along with information on their ecology. For the analyses, we
 assembled a set of 113 strains with diverse origin. For the molecular
 analyses, we used DNA sequences of three house-keeping genes (benA, CaM
 and RPB2) and employed species delimitation methods based on a
 multispecies coalescent model. Classical phylogenetic methods and
 genealogical concordance species recognition approaches were used for
 comparison. Phenotypic studies involved comparisons of macromorphology on
 four cultivation media, seven micromorphological characters and growth at
 temperatures ranging from 10 to 45 °C. Based on our results, all currently
 accepted species gained further support, while two new species are
 proposed (A. magnus and A. tenebricus). In addition, we proposed the new
 name A. neotritici to replace an invalidly described A. tritici. The
 revised section Candidi now comprises nine species, some of which manifest
 a high level of intraspecific genetic and/or phenotypic variability (e.g.
 A. subalbidus and A. campestris) while others are more uniform (e.g. A.
 candidus or A. pragensis). The growth rates on different media and at
 different temperatures, colony colours, production of soluble pigments,
 stipe dimensions and vesicle diameters contributed the most to species
 differentiation.
DOI: 10.57707/fmi-b2share.0jj42-b1z78
title: Data for Ritvanen et al. (2022) "Complementarity of Wind Measurements from Co-located X-band Weather Radar and Doppler Lidar"

description: Data for producing Figures 4, 6, 10. and 12 in the article "Complementarity of Wind Measurements from Co-located X-band Weather Radar and Doppler Lidar" by Ritvanen et al.

Figure 4 (1st column: range in meters, 2nd column: fraction value) 
measurement_ranges_lidar.csv
measurement_ranges_xband.csv

Figure 6 (1st column: range in meters, next columns: fraction value for horizontal visibility bin, bin upper limit in 1st row)
measurement_ranges_lidar_VIS_PT1M_AVG_75000.csv
measurement_ranges_xband_VIS_PT1M_AVG_75000.csv

Figure 10 (1st column: range in meters, next columns: fraction value for cloud base height bin, bin upper limit in 1st row)
measurement_ranges_lidar_CLHB_PT1M_INSTANT_3000.csv
measurement_ranges_xband_CLHB_PT1M_INSTANT_3000.csv

Figure 12 (1st column: range in meters, next columns: fraction value for precipitation intensity bin, bin upper limit in 1st row)
measurement_ranges_lidar_PRIO_PT10M_AVG_4.csv
measurement_ranges_xband_PRIO_PT10M_AVG_4.csv
DOI: 10.5061/dryad.w9ghx3frq
title: A method for determining the origin of crude drugs derived from animals using MinION, a compact next-generation sequencer

description: We evaluated whether MinION, an inexpensive, portable sequencer, can be
 applied for identifying the origin of crude drugs derived from animals.
 Standard and nonstandard crude drugs with different species of origin were
 examined. In addition, the standards mixed with nonstandard samples were
 used. As a target gene, cytochrome c oxidase I was amplified and
 sequenced. The Fast mode results had a slightly lower match ratio than
 High-accuracy mode, but the animals of origin were correctly determined by
 BLAST for all samples. For antler velvet derived from Rangifer tarandus,
 even the sequences were aligned based on Cervus elaphus, the animal of
 origin was determined correctly. Minor contents could be detected from
 mixtures of two animals, if the mixtures contained at least 19:1 mtDNA
 when the coverage allele-fraction threshold was 0.05. By contrast, in Fast
 mode, two sequences could not be separated due to the low accuracy of the
 base-calling in each read. For field work, the species of origin of crude
 drugs could be identified, by only simple DNA extraction and library
 preparation. Therefore, MinION appears to be a convenient tool for
 identifying the origin of crude drugs derived from animals.
DOI: 10.57707/fmi-b2share.g0j7m-15367
title: Data for Ritvanen et al. (2022) "Complementarity of Wind Measurements from Co-located X-band Weather Radar and Doppler Lidar"

description: Data for producing Figures 4, 6, 10. and 12 in the article "Complementarity of Wind Measurements from Co-located X-band Weather Radar and Doppler Lidar" by Ritvanen et al.

Figure 4 (1st column: range in meters, 2nd column: fraction value) 
measurement_ranges_lidar.csv
measurement_ranges_xband.csv

Figure 6 (1st column: range in meters, next columns: fraction value for horizontal visibility bin, bin upper limit in 1st row)
measurement_ranges_lidar_VIS_PT1M_AVG_75000.csv
measurement_ranges_xband_VIS_PT1M_AVG_75000.csv

Figure 10 (1st column: range in meters, next columns: fraction value for cloud base height bin, bin upper limit in 1st row)
measurement_ranges_lidar_CLHB_PT1M_INSTANT_3000.csv
measurement_ranges_xband_CLHB_PT1M_INSTANT_3000.csv

Figure 12 (1st column: range in meters, next columns: fraction value for precipitation intensity bin, bin upper limit in 1st row)
measurement_ranges_lidar_PRIO_PT10M_AVG_4.csv
measurement_ranges_xband_PRIO_PT10M_AVG_4.csv

Weather station measurements used in the analysis (1st & 2nd column: time; 3rd col: weather station name (stationname); 4th col: 10min avg optical precipitation intensity (PRIO_PT10M_AVG); 5th col: 1min avg cloud base height (CLHB_PT1M_INSTANT); 6th col: 1min avg horizontal visibility (VIS_PT1M_AVG)
weather_data_20210501_20211130.csv
DOI: 10.57707/fmi-b2share.w70py-r7z04
title: Data for Ritvanen et al. (2022) "Complementarity of Wind Measurements from Co-located X-band Weather Radar and Doppler Lidar"

description: Data for producing Figures 4, 6, 10. and 12 in the article "Complementarity of Wind Measurements from Co-located X-band Weather Radar and Doppler Lidar" by Ritvanen et al.

Figure 4 (1st column: range in meters, 2nd column: fraction value) 
measurement_ranges_lidar.csv
measurement_ranges_xband.csv

Figure 6 (1st column: range in meters, next columns: fraction value for horizontal visibility bin, bin upper limit in 1st row)
measurement_ranges_lidar_VIS_PT1M_AVG_75000.csv
measurement_ranges_xband_VIS_PT1M_AVG_75000.csv

Figure 10 (1st column: range in meters, next columns: fraction value for cloud base height bin, bin upper limit in 1st row)
measurement_ranges_lidar_CLHB_PT1M_INSTANT_3000.csv
measurement_ranges_xband_CLHB_PT1M_INSTANT_3000.csv

Figure 12 (1st column: range in meters, next columns: fraction value for precipitation intensity bin, bin upper limit in 1st row)
measurement_ranges_lidar_PRIO_PT10M_AVG_4.csv
measurement_ranges_xband_PRIO_PT10M_AVG_4.csv

Weather station measurements used in the analysis (1st & 2nd column: time; 3rd col: weather station name (stationname); 4th col: 10min avg optical precipitation intensity (PRIO_PT10M_AVG); 5th col: 1min avg cloud base height (CLHB_PT1M_INSTANT); 6th col: 1min avg horizontal visibility (VIS_PT1M_AVG)
weather_data_20210501_20211130.csv
DOI: 10.5061/dryad.brv15dvc5
title: Deep structure, long-distance migration and admixture in the colour polymorphic land snail Cepaea nemoralis

description: While snails of the genus Cepaea have historically been
 important in studying colour polymorphism an ongoing issue is
 that there is a lack of knowledge of the underlying genetics of the
 polymorphism, as well as an absence of genomic data to put findings in
 context. We therefore used phylogenomic methods to begin to investigate
 the post-glacial history of Cepaea nemoralis, with a long-term
 aim to understand the roles that selection and drift have in determining
 both European-wide and local patterns of colour polymorphism. By combining
 prior and new mitochondrial DNA data from over 1500 individuals with ddRAD
 genomic data from representative individuals across Europe, we show that
 patterns of differentiation are primarily due to multiple deeply diverged
 populations of snails. Minimally, there is a widespread Central European
 population and additional diverged groups in Northern Spain, the Pyrenees,
 as well as likely Italy and South Eastern Europe. The genomic analysis
 showed that the present-day snails in Ireland and possibly some other
 locations are likely descendants of admixture between snails from the
 Pyrenees and the Central European group, an observation that is consistent
 with prior inferences from mtDNA alone. The interpretation is
 that C. nemoralis may have arrived in Ireland via long-distance
 migration from the Pyrenean region, subsequently admixing with arrivals
 from elsewhere. This work therefore provides a baseline expectation for
 future studies on the genetics of the colour polymorphism, as well as
 providing a comparator for similar species.
description: Methods are described in the accompanying paper.
DOI: 10.5061/dryad.xksn02vj8
title: Same colors for different functions: implications for the evolution of carotenoid-based ornamentation

description: Sexual ornamentation is often assumed to be costly, allowing honest
 signaling of individual quality, and carotenoid-based colors were proposed
 to bear significant costs. If carotenoid-based colors are costly to
 produce, sexually-selected signals should use more concentrated carotenoid
 pigments and have more saturated color than non-sexual signals, where
 honesty-guaranteeing costs are not required. We tested this prediction
 comparing carotenoid-based colors across canaries, goldfinches and allies,
 because many of these species use yellow plumage as sexual ornamentation,
 but also have yellow rumps that appear to be non-sexual flash marks. Only
 in the breast, but not the rump, was there an asymmetric co-distribution
 of male and female color saturation, with males similarly or more
 saturated than females, indicating evolution of breast color by sexual
 selection. Yellow was not consistently more saturated in the breast than
 in the rump, and the co-distribution of rump and breast color saturation
 indicated that saturated rumps can persist irrespective of breast color.
 This challenges the assumption that carotenoid-based colors bear
 significant costs. The use of carotenoid coloration as sexual signals in
 this clade may instead be due to social costs, cost-free index mechanisms
 for signaling quality, and/or socially-monogamous species evolving
 low-cost signals to mostly discriminate against low-quality mates.
DOI: 10.6084/m9.figshare.31167913
title: Experimentally acquired low-light micro-PIV images of CO2 flows under transcritical and supercritical conditions

description: This experimentally acquired dataset consists of a series of µPIV-like low-light image sequences of fluorescent particles. The particles were recorded using a high-speed CCD camera and were imaged through a microchannel with flowing carbon dioxide across a range of high-pressure, transcritical conditions inducing optical distortions, so-called speckles. An important feature is that each optically corrupted image sequence is paired with a speckle-free ground-truth of an identical particle pattern. Additionally, the dataset is accompanied by thermodynamic metadata in the form of csv-files for each image.The dataset is designed to support the development, validation, and benchmarking of image reconstruction algorithms under realistic experimental conditions. This can be utilised to drive the advancement of novel data-driven approaches, but also to further develop conventional image reconstruction techniques.<b>Data Structure</b>The dataset is organised in a hierarchical directory structure designed to provide a clear and traceable mapping between thermodynamic conditions, image data, and associated metadata. At the top level, the data are grouped into individual directories corresponding to sequences. Each sequence represents a distinct experimental protocol (e.g. wall-heater or pre-heater operation) with a unique particle pattern and is listed in the extended operating-point table provided in: <i>03_additional_data/operating_points_full.csv. </i>Within each sequence directory, sub-directories are organised by operating point. Each operating point corresponds to a unique combination of boundary conditions. Each operating-point directory contains:Ten consecutively recorded image pairs in TIFF formatA comma-separated values (CSV) file containing the associated metadata for each imageThe image naming convention follows the format: <i>SeqXX_OPXX_imgXXX.tif </i>where <i>SeqXX</i> identifies the thermodynamic sequence, <i>OPXX</i> the operating point, and <i>imgXXX</i> the chronological order of acquisition. This filename also serves as the unique image identifier used throughout the dataset. The CSV metadata file links each image identifier to the recorded thermodynamic state variables. All values are reported in SI units. The same folder structure exists for both:raw_images: unprocessed camera outputprocessed_images: images after application of a 99% histogram stretch, as described in the accompanying publicationThe directory <i>03_additional_data</i> further contains reference image data acquired from fluorescent particles deposited on a simple glass slide. These images can be used to compute particle size distributions and to benchmark the optical and adhesive properties of the particle–adhesive solution independently of the microfluidic experiments.A Jupyter notebook is included with the dataset to demonstrate representative analysis workflows and to support reproducibility. The notebook is located in <i>03_additional_data/02_code/ </i>and is written entirely in Python.