cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dd.ffrzfc
title: Eco-evolutionary responses of species distributions to climate change

description: This data is used for study of "Eco-evolutionary responses of species distributions to climate change"
DOI: 10.17632/465vpcsd84.1
title: Archaeological cropmark synthetic signatures (ACSS)

description: This data contains measured and synthetic hyperspectral signatures associated with cropmarks from buried remains. A simulations generating script is also included. Simulations are generated by the radiative transfer model PROSAIL through sampling a multivariate empirical distribution of biophysical parameters. This distribution is derived from parameters obtained at an earlier stage from measured signatures using PROSAIL inversion. Synthetic signatures simulated in this manner have been used in the publication Gravanis, E., & Agapiou, A. (2024), Physically-based detection algorithm of buried archaeological remains using spectral signatures, IEEE Access.
DOI: 10.15468/dl.2ym8cm
title: Occurrence Download

description: A dataset containing 335 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hemitripterus villosus (Pallas, 1814)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 335 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000441-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjakrd
title: Occurrence Download

description: A dataset containing 2159 species occurrences available in GBIF matching the query:
{
 "or" : [
 "ScientificName is Asclepias brachystephana Engelm. ex Torr.",
 "ScientificName is Asclepias macrotis Torr.",
 "ScientificName is Asclepias scaposa Vail"
 ]
}

 The dataset includes 2159 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000443-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/vcn6wngc58
title: Blockade of TSP-1/CD47 signal axis promotes donor hematopoietic engraftment by improving SEC/MK niche function

description: Thrombospondin-1 (TSP-1)/CD47 signaling has been shown to induce cell death and inhibit angiogenesis. Here we investigated the possibility of improving donor engraftment by blocking the TSP-1/CD47 pathway in mouse models of total body irradiation (TBI)-conditioned syngeneic HSCT. Our findings revealed that HSCT engraftment was improved in mice deficient in CD47 (Cd47−/−) or TSP-1 (Thbs1−/−) compared to wild-type (WT) mice. The lack of TSP-1 or CD47 enhanced the production of CXCL12 by megakaryocytes and platelets, promoting the seeding of donor hematopoietic stem cells (HSCs) in sinusoidal endothelial cell (SEC)/megakaryocyte niches. Both Cd47−/− and Thbs1−/− mice showed reduced platelet adhesion to sinusoidal vascular cells, attenuated endothelial injury, and enhanced BM vascular regeneration, preserving SEC niches. Antibody neutralization of TSP-1 significantly increased CXCL12 production, donor HSC engraftment, and vascular niche regeneration in WT mice. In summary, the TSP-1/CD47 pathway is a promising therapeutic target for enhancing HSCT efficacy and ameliorating HSCT-related endothelial injury syndrome.
DOI: 10.17632/vcn6wngc58.1
title: Blockade of TSP-1/CD47 signal axis promotes donor hematopoietic engraftment by improving SEC/MK niche function

description: Thrombospondin-1 (TSP-1)/CD47 signaling has been shown to induce cell death and inhibit angiogenesis. Here we investigated the possibility of improving donor engraftment by blocking the TSP-1/CD47 pathway in mouse models of total body irradiation (TBI)-conditioned syngeneic HSCT. Our findings revealed that HSCT engraftment was improved in mice deficient in CD47 (Cd47−/−) or TSP-1 (Thbs1−/−) compared to wild-type (WT) mice. The lack of TSP-1 or CD47 enhanced the production of CXCL12 by megakaryocytes and platelets, promoting the seeding of donor hematopoietic stem cells (HSCs) in sinusoidal endothelial cell (SEC)/megakaryocyte niches. Both Cd47−/− and Thbs1−/− mice showed reduced platelet adhesion to sinusoidal vascular cells, attenuated endothelial injury, and enhanced BM vascular regeneration, preserving SEC niches. Antibody neutralization of TSP-1 significantly increased CXCL12 production, donor HSC engraftment, and vascular niche regeneration in WT mice. In summary, the TSP-1/CD47 pathway is a promising therapeutic target for enhancing HSCT efficacy and ameliorating HSCT-related endothelial injury syndrome.
DOI: 10.25318/3310084501-eng
title: Number of enterprises in Canada, by revenue group and immigrant status of owner

description: Annual counts of enterprises by immigrant status of owner (admitted less than 5 years ago, admitted 5 to 9 years ago, etc.) and revenue groups.
DOI: 10.5066/p93i0p67
title: Seabird Diet Data Collected on Middleton Island, Gulf of Alaska

description: These data are part of the Gulf Watch Alaska (GWA) long-term monitoring program and contain diet data from Black-legged Kittiwakes (BLKI), Rhinoceros Auklets (RHAU), and Tufted puffins (TUPU) located on Middleton Island in the Gulf of Alaska. This data release consists of seabird diet sample data and prey identification and morphometrics.
DOI: 10.17632/xyp2k8b9vf.1
title: Dataset: Use of Nutrition Facts Label and Purchase of Vegetable Juice Questionnaire in Japan

description: The data aim to gain information about the relationship between consumers’ nutritional knowledge and their usage of nutrition facts labels, as well as the impact of using nutrition facts labels on product purchases. The available data files are three: (i) a codebook that maps the variables’ names and values to the questionnaire’s questions and answers; (ii) raw data of the collected survey translated into English; and (iii) a grand total table (GT table) for each questionnaire item.
DOI: 10.15468/dl.3qe8yc
title: Occurrence Download

description: A dataset containing 13992 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Panicum dichotomiflorum Michx., Panicum multiflorum Poir., Panicum chloroticum var. sylvestre Trin., Panicum proliferum var. strictum Griseb., Panicum proliferum var. xanthochlorum Hack. ex Bertoni, Panicum dichotomiflorum var. imperiorum Fernald, Panicum dichotomiflorum var. geniculatum Fernald, Panicum chloroticum Nees, Panicum elliottii S.Watson, Panicum amplectens Chapm., Panicum chloroticum var. luxurians Nees, Panicum miliaceum Walter, Panicum ammophilum Trin. ex Nees, Panicum dichotomiflorum subsp. imperium Fernald, Panicum chloroticum var. pingue Nees, Panicum francavillanum E.Fourn. ex Hemsl., Panicum francavillanum E.Fourn., Panicum dichotomiflorum subsp. geniculatum Fernald, Panicum chloroticum var. agreste Nees ex Trin., Panicum chloroticum subsp. agreste Nees ex Trin., Panicum brachiatum Bosc, Panicum proliferum subsp. pilosum Griseb., Panicum aquaticum var. cartagoense Davidse, Panicum dichotomiflorum var. imperium Fernald, Panicum proliferum var. richardii Döll, Panicum aquaticum subsp. cartagoense Davidse, Panicum dichotomiflorum var. puritanorum Svenson, Panicum proliferum subsp. xanthochlorum Hack., Panicum chloroticum subsp. luxurians Nees ex Döll, Panicum proliferum var. pilosum Griseb., Panicum hygrophilum Salzm. ex Steud., Panicum geniculatum Muhl., Panicum proliferum subsp. strictum Griseb., Panicum proliferum var. xanthochlorum Hack., Panicum proliferum subsp. xanthochlorum Hack. ex Bertoni, Panicum chloroticum subsp. agreste Nees, Panicum alternatum Brouss., Panicum proliferum subsp. geniculatum Alph.Wood, Panicum ammophilum Trin., Panicum proliferum subsp. richardii Döll, Panicum chloroticum subsp. pingue Nees, Panicum chloroticum subsp. luxurians Nees, Panicum chloroticum Nees ex Trin., Panicum retrofractum Delile ex Desv., Panicum chloroticum subsp. sylvestre Nees, Panicum amplectans Chapm., 1878, Panicum chloroticum var. sylvestre Nees, Panicum proliferum var. geniculatum Alph.Wood, Panicum dichotomiflorum subsp. puritanorum Svenson, Panicum hygrophilum Salzm., Panicum brachiatum Bosc ex Spreng., Panicum chloroticum var. luxurians Nees ex Döll, Panicum retrofractum Delile, Panicum proliferum subsp. chloroticum (Nees) Hack., Panicum aquaticum subsp. chloroticum (Nees) R.C.Foster, Leptoloma dichotomiflora (Michx.) Smyth, Panicum dichotomiflorum subsp. puritanorum (Svenson) Freckmann & Lelong, Panicum dichotomiflorum var. chloroticum (Nees ex Trin.) B.Bock, Panicum proliferum var. chloroticum (Nees ex Trin.) Hack., Panicum aquaticum var. chloroticum (Nees ex Trin.) R.C.Foster)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 13992 records from 537 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000444-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26724992
title: Additional file 2 of Transcriptome and metabolome analyses reveal the regulatory role of MdPYL9 in drought resistance in apple

description: Supplementary Material 2: Supplementary Table S2. Transcriptome sequencing data and quality assessment.
DOI: 10.6084/m9.figshare.26725004
title: Additional file 6 of Transcriptome and metabolome analyses reveal the regulatory role of MdPYL9 in drought resistance in apple

description: Supplementary Material 6: Supplementary Table S6. Differentially expressed genes in the WT-D_vs_OE-D comparison.
DOI: 10.6084/m9.figshare.26724989.v1
title: Additional file 1 of Transcriptome and metabolome analyses reveal the regulatory role of MdPYL9 in drought resistance in apple

description: Supplementary Material 1: Supplementary Table S1. qRT-PCR primers in this study.
DOI: 10.6084/m9.figshare.26737242
title: Additional file 8 of Multivariate comparison of taxonomic, chemical and operational data from 80 different full-scale anaerobic digester-related systems

description: Supplementary file 8: Supplementary Tables 4A-F. All multivariate analysis.
DOI: 10.6084/m9.figshare.26736342
title: Additional file 3 of iGenSig-Rx: an integral genomic signature based white-box tool for modeling cancer therapeutic responses using multi-omics data

description: Additional file 3. Tables of mutation and chimeric transcripts in CALGB 40601 and ACOSG Z1041.
DOI: 10.57745/4o45tz
title: Script_Billaud_et_al_2024.Rmd

description: Title: R script developed to calculate the robustness estimators of plant immunity for each accession and to produce figures and conclusions published in Billaud and co-authors (2024).
Description: The R script Script_Billaud_et_al_2024.Rmd was developed to analyze the two tabular files Phyto_Calc_out_test12.csv and PVY_Calc_out_test12.csv in order to calculate estimators of robustness of immunity to Phytophthora capsici and potato virus Y for each Capsicum annuum accession in the two temperature environments, and to produce figures and conclusions published in Billaud and co-authors (2024).
DOI: 10.6084/m9.figshare.26725007
title: Additional file 7 of Transcriptome and metabolome analyses reveal the regulatory role of MdPYL9 in drought resistance in apple

description: Supplementary Material 7: Supplementary Table S7. Number of DEGs annotated to enriched KEGG pathways for control plants.
DOI: 10.6084/m9.figshare.26725007.v1
title: Additional file 7 of Transcriptome and metabolome analyses reveal the regulatory role of MdPYL9 in drought resistance in apple

description: Supplementary Material 7: Supplementary Table S7. Number of DEGs annotated to enriched KEGG pathways for control plants.
DOI: 10.57745/onucnf
title: README_Robustness_Immunity.txt

description: Title: File in .txt describing each individual file of the dataset.
Description: This .txt file gathers the metadata for two .csv files of experimental data (Phyto_Calc_out_test12.csv and PVY_Calc_out_test12.csv), one R script used for analyzing the experimental data (Script_Billaud_et_al_2024.Rmd), and a .csv file listing the versions of the R packages used by the R script (Packages_version-1.csv).
DOI: 10.6084/m9.figshare.26737269.v1
title: Additional file 3 of Retinoic acid modulation guides human-induced pluripotent stem cell differentiation towards left or right ventricle-like cardiomyocytes

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26723957
title: Additional file 2 of Genome-wide characterization and expression profiling of E2F/DP gene family members in response to abiotic stress in tomato (Solanum lycopersicum L.)

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26724113
title: Additional file 4 of An RNA-seq study in Friedreich ataxia patients identified hsa-miR-148a-3p as a putative prognostic biomarker of the disease

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.26724116
title: Additional file 5 of An RNA-seq study in Friedreich ataxia patients identified hsa-miR-148a-3p as a putative prognostic biomarker of the disease

description: Supplementary Material 5
DOI: 10.15468/dl.qnkk4c
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.72883 -34.417402, 148.72883 -34.424139, 148.735567 -34.424139, 148.735567 -34.421893, 148.733321 -34.421893, 148.733321 -34.417402, 148.72883 -34.417402))"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071177-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25466794
title: Data file and result table

description: Ishikawa cells were were treated with 2% v/v FBS exosome-free MEM containing 100µM phosphatidylcholine liposomes (PC), phosphatidylethanolamine liposomes (PE) or PBS (ctrl). Following 72h, cells were collected in RIPA-buffer using a scraper, vortexed for 5 min, and centrifuged at 12,000 g for 30 min at 4°C. The supernatant was stored at -80°C.
DOI: 10.6084/m9.figshare.25466794.v1
title: Data file and result table

description: Ishikawa cells were were treated with 2% v/v FBS exosome-free MEM containing 100µM phosphatidylcholine liposomes (PC), phosphatidylethanolamine liposomes (PE) or PBS (ctrl). Following 72h, cells were collected in RIPA-buffer using a scraper, vortexed for 5min, and centrifuged at 12,000G for 30min at 4°C. The supernatant was stored at -80°C.
DOI: 10.6084/m9.figshare.26736651.v1
title: Additional file 9 of Comparative transcriptome analysis reveals transcriptional regulation of anthocyanin biosynthesis in purple radish (Raphanus sativus L.)

description: Supplementary Material 9.
DOI: 10.6084/m9.figshare.26726069.v1
title: Additional file 1 of Deterioration-associated microbiome of a modern photographic artwork: the case of Skull and Crossbones by Robert Mapplethorpe

description: Additional file 1: Appendix S1. DNA Extraction from adhesive tape. Table S1. List of prokaryotic Operational Taxonomic Units (OTUs) identified using high-throughput sequencing data through metabarcoding analysis of 16S rRNA marker, showing relative frequencies per sample [front canvas (FC): 5, 6; back canvas (BC): 1, 2, 3, 4]. Table S2. List of fungal Operational Taxonomic Units (OTUs) identified using high-throughput sequencing data through metabarcoding analysis of ITS2 nrDNA marker, showing relative frequencies per sample [front canvas (FC): 6, 7; back canvas (BC): 1, 2, 3, 4].
DOI: 10.6084/m9.figshare.26736762
title: Additional file 5 of Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome

description: Additional file 5. cnv_benchmark_calls, high confidence CNV call set in vcf format.
DOI: 10.6084/m9.figshare.26736756.v1
title: Additional file 3 of Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome

description: Additional file 3. cnv_gain_cn_median, copy number calls in gain regions.
DOI: 10.6084/m9.figshare.26736753.v1
title: Additional file 2 of Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome

description: Additional file 2. CNV_genelist, genes in the CNV affected regions.
DOI: 10.6084/m9.figshare.26725235
title: Additional file 4 of Co-overexpression of chitinase and β-1,3-glucanase significantly enhanced the resistance of Iranian wheat cultivars to Fusarium

description: Supplementary Material 4.
DOI: 10.6084/m9.figshare.26725238
title: Additional file 5 of Co-overexpression of chitinase and β-1,3-glucanase significantly enhanced the resistance of Iranian wheat cultivars to Fusarium

description: Supplementary Material 5.
DOI: 10.15468/dl.p847gx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.789466 -34.417402, 148.789466 -34.421893, 148.796204 -34.421893, 148.796204 -34.417402, 148.789466 -34.417402))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071178-240626123714530/datasets/export for details.
DOI: 10.15468/dl.3revyf
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "Geometry POLYGON((116.97571 -8.01282,147.02429 -8.01282,147.02429 4.01282,116.97571 4.01282,116.97571 -8.01282))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cornufer punctatus (Peters & Doria, 1878)",
 "Year 2004-2024"
 ]
}

 The dataset includes 21 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071179-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26724623.v1
title: Additional file 1 of Treatment of harmful gambling: a scoping review of United Kingdom-based intervention research

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26725595.v1
title: Additional file 4 of Effects of Crocus sativus on glycemic control and cardiometabolic parameters among patients with metabolic syndrome and related disorders: a systematic review and meta-analysis of randomized controlled trials

description: Additional file 4: FigureS1a, FigureS1b, FigureS2, FigureS3a, FigureS3b, FigureS3c, FigureS4a, FigureS4b, FigureS4c, FigureS5- FigureS10. Forest plot of subgroup analysis by duration of intervention of the estimated impact of Crocus sativus on FBG. Forest plot of subgroup analysis by a dose of crocin of the estimated impact of Crocus sativus on FBG. Forest plot of subgroup analysis by duration of intervention of the estimated impact of Crocus sativus on HbA1c. Forest plot of the efficacy of Crocus sativus on FINS. Forest plot of subgroup analysis by saffron preparations of the estimated impact of Crocus sativus on FINS. Forest plot of subgroup analysis by duration of intervention of the estimated impact of Crocus sativus on FINS. Forest plot of the efficacy of Crocus sativus on HOMA-IR. Forest plot of subgroup analysis by saffron preparations of the estimated impact of Crocus sativus on HOMA-IR. Forest plot of subgroup analysis by duration of intervention of the estimated impact of Crocus sativus on HOMA-IR. Forest plot of the efficacy of Crocus sativus on TG. Forest plot of the efficacy of Crocus sativus on TC. Forest plot of subgroup analysis by type of chronic condition of the estimated impact of Crocus sativus on HDL. Forest plot of the efficacy of Crocus sativus on LDL. Forest plot of the efficacy of Crocus sativus on DBP. Forest plot of the efficacy of Crocus sativus on BMI.
DOI: 10.6084/m9.figshare.26724623
title: Additional file 1 of Treatment of harmful gambling: a scoping review of United Kingdom-based intervention research

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26725598.v1
title: Additional file 5 of Effects of Crocus sativus on glycemic control and cardiometabolic parameters among patients with metabolic syndrome and related disorders: a systematic review and meta-analysis of randomized controlled trials

description: Additional file 5: Figure S11a-Figure S11k. Funnel plot of FBG. Funnel plot of HbA1c. Funnel plot of FINS. Funnel plot of HOMA-IR. Funnel plot of TG. Funnel plot of TC. Funnel plot of  HDL. Funnel plot of LDL. Funnel plot of SBP. Funnel plot of DBP. Funnel plot of BMI.
DOI: 10.6084/m9.figshare.26736168.v1
title: Additional file 2 of A consensus genome of sika deer (Cervus nippon) and transcriptome analysis provided novel insights on the regulation mechanism of transcript factor in antler development

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.26737479.v1
title: Additional file 1 of Causal associations between gut microbiota and chronic prostatitis/chronic pelvic pain syndrome: a two-sample Mendelian randomization study

description: Supplementary Materials 1 All results of MR analysis and sensitivity analysis between GM and CP/CPPS.
DOI: 10.14278/rodare.3043
title: Data publication: Selective recovery of Cu from copper mold production waste by organic ligands

description: The dataset uploaded here contains both raw data and calculated data that were used for the publication about selective recovery of Cu from copper mold production waste by organic ligands
DOI: 10.5281/zenodo.11164272
title: Named Entity Corpus for Occupational Substance Exposure Assessment

description: This is a corpus consisting of selected sections (i.e., Abstract, Methods and Results) of scientific research articles concerning occupational exposures to two different types of substance, i.e.,  diesel exhaust (51 articles) and respirable crystalline silica (RCS)  (50 articles).  The article sections have been annotated by experts in the field with 6 categories of named entities (NEs) relevant to the assessment of occupational substance exposures, particularly in the context of Job Exposure Matrices (JEMs).

The corpus is available in two different formats, brat standoff format and JSON. 

The corpus and associated NER models are described in more detail in the following atricle, which should be cited if you use the corpus: 

Thompson, P., Ananiadou, S., Basinas I., Brinchmann, B. C., Cramer, C., Galea, K. S., Ge, C., Georgiadis, P., Kirkeleit, J., Kuijpers, E., Nguyen, N., Nuñez, R., Schlünssen, V., Stokholm, Z. A., Taher, E. A., Tinnerberg, H., Van Tongeren, M. and Xie, Q. (2024). Supporting the working life exposome: annotating occupational exposure for enhanced literature search. PLoS ONE 19(8): e0307844
DOI: 10.14278/rodare.3044
title: Data publication: Selective recovery of Cu from copper mold production waste by organic ligands

description: The dataset uploaded here contains both raw data and calculated data that were used for the publication about selective recovery of Cu from copper mold production waste by organic ligands
DOI: 10.15468/dl.ra5mm3
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.096134 -34.421893, 147.096134 -34.424139, 147.107363 -34.424139, 147.107363 -34.421893, 147.096134 -34.421893))"
 ]
}

 The dataset includes 36 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071180-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26725415
title: Additional file 10 of Effect of genomic and cellular environments on gene expression noise

description: Additional file 10: Table S9. Flux indices of clones.
DOI: 10.5281/zenodo.13323704
title: AutoTEM_Montage_21617_R1_150B_T5_03_003563_20201016000843