cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3624068_d8
title: Additional file 5: Table S2. of Genome-wide identification of potato long intergenic noncoding RNAs responsive to Pectobacterium carotovorum subspecies brasiliense infection

description: LincRNA conservation analysis. (XLSX 32Â kb)
DOI: 10.17863/cam.6718
title: Research data supporting "Effect of manganese sulphide particle shape on the retardation of grain boundary motion"

description: Micrographs using various methods, spreadsheets of quantitative data
DOI: 10.6084/m9.figshare.c.3624092_d1
title: Additional file 1: of Does erosion progress differently on teeth already presenting clinical signs of erosive tooth wear than on sound teeth? An in vitro pilot trial

description: Data. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3624101_d1
title: Additional file 1: of NBS-LRR-mediated resistance triggered by aphids: viruses do not adapt; aphids adapt via different mechanisms

description: Data set of resistance tests for melon accessions and lines. (XLSX 1385 kb)
DOI: 10.6084/m9.figshare.c.3624104_d1
title: Additional file 4: of Activins and their related proteins in colon carcinogenesis: insights from early and advanced azoxymethane rat models of colon cancer

description: Histopathology, immunohistochemistry, ELISA and gene expression raw data. Raw data generated from gross and microscopic studies of tumours, digital image analysis for measuring the surface areas of neoplastic lesions, immunohistochemistry scores of all studied molecules, ELISA data generated from serum and colonic tissues; and data form quantitative expression of all targeted genes. (XLSX 674 kb)
DOI: 10.17863/cam.21238
title: Research data supporting Dirac-Point Shift by Carrier Injection Barrier in Graphene Field-Effect Transistor Operation at Room Temperature

description: Electrical transport data of graphene devices from EPSRC funded project: GRAPHTED (EP/K016636/1).
DOI: 10.6084/m9.figshare.c.3624122_d1
title: Additional file 12: of Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

description: Nucleotide alignments. Clusters of interest identified from the 1:1 orthologues clustering method predicted to be under selection pressure based on DN/DS analysis. (ZIP 50 kb)
DOI: 10.5281/zenodo.14444148
title: Dataset supporting the implementation of workflows for Essential Biodiversity Variables (EBVs) at a European scale

description: 1. Results of surveys of monitoring techniques 

We present two files containing the results of the online surveys on monitoring techniques conducted during the EuropaBON stakeholder workshop on freshwater, marine, and terrestrial EBV workflows, held on 22-24 February 2023 (Lumbierres and Kissling, 2023). The surveys assessed the relevance of six monitoring techniques for collecting data for each of the 70 EBVs identified by EuropaBON (Junker et al., 2023). The six monitoring techniques evaluated were: structured in-situ monitoring, citizen-science observations, DNA-based methods, digital sensors, satellite remote sensing, and aerial remote sensing. Respondents indicated the importance of each technique for every EBV using one of four responses:  "yes", "partially", "no", or "I don't know."

2. Results of the list of all requirements and needs and emerging tools and projects identified by participants during the stakeholder workshop, classified into harmonised categories

We present two additional files containing information on the requirements and needs, as well as emerging tools and projects, identified during the EuropaBON stakeholder workshop on freshwater, marine, and terrestrial EBV workflows, held on 22-24 February 2023 (Lumbierres and Kissling, 2023). Workshop participants were asked to list "Emerging tools and projects" referring to tools and EU projects currently under development but not yet operational for regulatory reporting, and "Requirements and needs" outlining future needs for the operationalisation of EBV workflows for each of the 70 identified EBVs. The data was collected across the three main workflow components: data collection, data integration, and modelling. After the workshop, the collected inputs were systematically categorized into harmonised categories for consistency and clarity.

The provided files include tables where columns represent individual EBVs, and rows represent harmonised categories. For each EBV, the corresponding requirements and needs, as well as the emerging tools and projects identified by participants, are assigned to the appropriate harmonised category.

References

Junker, J., Beja, P., Brotons, L., Fernandez, M., Fernández, N., Kissling, W.D., Lumbierres, M., Solheim, A.L., Maes, J., Morán-Ordóñez, A., Moreira, F., Musche, M., Santana, J., Valdez, J., Pereira, H., 2023. D4.1. List and specifications of EBVs and EESVs for a European wide biodiversity observation network. ARPHA Preprints 4, e102530. ,

Lumbierres, M., Kissling, W.D., 2023. Important first steps towards designing the freshwater, marine and terrestrial Essential Biodiversity Variable (EBV) workflows for the European Biodiversity Observation Network. Research Ideas and Outcomes 9, e109120. ,
DOI: 10.5281/zenodo.14444149
title: Dataset supporting the implementation of workflows for Essential Biodiversity Variables (EBVs) at a European scale

description: 1. Results of surveys of monitoring techniques 

We present two files containing the results of the online surveys on monitoring techniques conducted during the EuropaBON stakeholder workshop on freshwater, marine, and terrestrial EBV workflows, held on 22-24 February 2023 (Lumbierres and Kissling, 2023). The surveys assessed the relevance of six monitoring techniques for collecting data for each of the 70 EBVs identified by EuropaBON (Junker et al., 2023). The six monitoring techniques evaluated were: structured in-situ monitoring, citizen-science observations, DNA-based methods, digital sensors, satellite remote sensing, and aerial remote sensing. Respondents indicated the importance of each technique for every EBV using one of four responses:  "yes", "partially", "no", or "I don't know."

2. Results of the list of all requirements and needs and emerging tools and projects identified by participants during the stakeholder workshop, classified into harmonised categories

We present two additional files containing information on the requirements and needs, as well as emerging tools and projects, identified during the EuropaBON stakeholder workshop on freshwater, marine, and terrestrial EBV workflows, held on 22-24 February 2023 (Lumbierres and Kissling, 2023). Workshop participants were asked to list "Emerging tools and projects" referring to tools and EU projects currently under development but not yet operational for regulatory reporting, and "Requirements and needs" outlining future needs for the operationalisation of EBV workflows for each of the 70 identified EBVs. The data was collected across the three main workflow components: data collection, data integration, and modelling. After the workshop, the collected inputs were systematically categorized into harmonised categories for consistency and clarity.

The provided files include tables where columns represent individual EBVs, and rows represent harmonised categories. For each EBV, the corresponding requirements and needs, as well as the emerging tools and projects identified by participants, are assigned to the appropriate harmonised category.

References

Junker, J., Beja, P., Brotons, L., Fernandez, M., Fernández, N., Kissling, W.D., Lumbierres, M., Solheim, A.L., Maes, J., Morán-Ordóñez, A., Moreira, F., Musche, M., Santana, J., Valdez, J., Pereira, H., 2023. D4.1. List and specifications of EBVs and EESVs for a European wide biodiversity observation network. ARPHA Preprints 4, e102530. ,

Lumbierres, M., Kissling, W.D., 2023. Important first steps towards designing the freshwater, marine and terrestrial Essential Biodiversity Variable (EBV) workflows for the European Biodiversity Observation Network. Research Ideas and Outcomes 9, e109120. ,
DOI: 10.15468/dl.7n4h2m
title: Occurrence Download

description: A dataset containing 726 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedeomyia squamipennis (Lynch Arribálzaga, 1878)"
 ]
}

 The dataset includes 726 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033225-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.94403
title: Supporting Data for "Decoupling of the many-body effects from the electron mass in GaAs by means of reduced dimensionality"

description: Data used in the figures in the paper and in its Supplementary Material. See README.txt files for full details.
DOI: 10.17863/cam.56681
title: Research data supporting "Luminescent Solar Concentrators Based on Energy Transfer from an Aggregation-Induced Emitter Conjugated Polymer"

description: The folder “Figure 2” contains normalised UV/Vis absorption and emission spectra of p-O-TPE (in 50:50 by vol EtOH/THF) and PDI-Sil (in THF). The emission spectra were recorded at front-face configurations, with excitation wavelength of 380 and 520 nm used for p-O-TPE and PDI-Sil, respectively. The folder “Figure 3” contains the emission spectra (λem = 370 nm) of p-O-TPE-dU(600) with various concentrations recorded using front-face configuration (3b), PLQY of p-O-TPE-dU(600) with various concentrations measured with excitation wavelength of 400 nm (3c) and the UV/Vis transmittance spectra of p-O-TPE-dU(600) with various concentrations. The folder “Figure 4” contains the emission spectra of dU(600) ureasils (2 cm × 2 cm × 0.3 cm) measured with front-face (4a) and edge (4b) configurations, with various concentration ratios between p-O-TPE and PDI-Sil, and excitation wavelength of 370 nm. The folder “Figure S1” contains Photoluminescence excitation (λem = 650 nm) and (b) emission spectra (λex = 350 nm) of dU(600) waveguides, measured using front-face configurations. The folder “Figure S3” contains the normalised excitation spectra (a-e, λem = 650 nm) of p-O-TPE-dU(600), p-O-TPE-PDI-Sil-dU(600) and PDI-Sil-dU(600) with varying concentration ratios between p-O-TPE and PDI-Sil. A concentration ratio of 1:1 represents 0.005 wt% of p-O-TPE and 0.005 wt% of PDI-Sil. The folder “Figure S4” contains the normalised emission spectra (a-e, λex = 370 nm) of p-O-TPE-dU(600), p-O-TPE-PDI-Sil-dU(600) and PDI-Sil-dU(600) with varying concentration ratios between p-O-TPE and PDI-Sil. A concentration ratio of 1:1 represents 0.005 wt% of p-O-TPE and 0.005 wt% of PDI-Sil. The folder “Figure S7” contains the normalised emission spectra (λex = 530 nm) of PDI-Sil-dU(600) samples with varying concentrations of PDI-Sil (0.0005 to 0.05 wt%), recorded with front-face configurations. The folder “Figure S9” contains the UV/Vis transmittance spectra of dU(600), p-O-TPE-dU(600) (concentrations of p-O-TPE = 0.05 wt%), PDI-Sil-dU(600) (concentration of PDI-Sil = 0.05 wt%) and p-O-TPE-PDI-Sil-dU(600) (concentration of both p-O-TPE and PDI-Sil = 0.05 wt%). The dimension of the samples is 4.5 cm × 4.5 cm × 0.3 cm. The folder “Figure S10” contains the UV/Vis absorption spectra of dU(600), p-O-TPE-dU(600) (concentrations of p-O-TPE = 0.05 wt%), PDI-Sil-dU(600) (concentration of PDI-Sil = 0.05 wt%) and p-O-TPE-PDI-Sil-dU(600) (concentration of both p-O-TPE and PDI-Sil = 0.05 wt%). The dimension of the samples is 4.5 cm × 4.5 cm × 0.3 cm.
DOI: 10.6084/m9.figshare.c.3624122_d7
title: Additional file 9: of Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

description: Putative conserved effectors. List of conserved sequence clusters that contain candidate effectors identified in this study by transcriptomics or proteomics, or previously identified [22, 23, 50]. (XLS 51 kb)
DOI: 10.6084/m9.figshare.c.3624122_d8
title: Additional file 13: of Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

description: Predicted nucleotide coding sequences for Myzus persicae genotype O. (GZ 12701 kb)
DOI: 10.6084/m9.figshare.c.3624122_d9
title: Additional file 10: of Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

description: Clusters. Resulting clusters (one line per cluster) from aphid sequences subjected to MCL clustering analysis (BLAST-MCL-clustering). Another clustering method was used to identify 1:1 orthologues by using reciprocal best BLAST hit analysis of all the datasets, resulting in an RBBH-orthologues network (one line per cluster). Putative pioneer effectors were identified and their sequences are reported. (XLSX 4051 kb)
DOI: 10.6084/m9.figshare.c.3624122_d10
title: Additional file 6: of Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

description: GO enrichment analysis data for all species. (TXT 9449 kb)
DOI: 10.6084/m9.figshare.c.3624122_d11
title: Additional file 14: of Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

description: Predicted nucleotide coding sequences for Myzus persicae genotype F. (GZ 12050 kb)
DOI: 10.6084/m9.figshare.c.3624176_d1
title: Additional file 2: of PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modifications

description: PhosphOrtholog input file for Dataset 3. (CSV 153Â kb)
DOI: 10.6084/m9.figshare.c.3624182_d1
title: Additional file 1: of Comparing species tree estimation with large anchored phylogenomic and small Sanger-sequenced molecular datasets: an empirical study on Malagasy pseudoxyrhophiine snakes

description: Samples used in analyses and which loci were successfully sequenced (NGS=Next generation sequencing; Cmos, COI, CytB, Rag2, and NAV intron 5=Sanger sequencing). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3624122_d12
title: Additional file 16: of Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

description: Predicted nucleotide coding sequences for Myzus cerasi. (GZ 13367 kb)
DOI: 10.17863/cam.40997
title: Research data supporting "Communal pairing in spin-imbalanced Fermi gases"

description: Tarball containing input and output files for sample CASINO quantum Monte Carlo run of a spin-imbalanced fermion gas. Input files: input - main input file, controls simulation parameters, quantities to measure and fermion interaction potential correlation.data - contains wavefunction information parameters.casl - contains Jastrow factor information expval_orig.data - optional, allows fine control of measurement quantities Output files: out - summarises simulation run, gives energy measurement expval.data - contains all other measured quantities Further details can be found in the CASINO manual
DOI: 10.6084/m9.figshare.c.3624176_d2
title: Additional file 1: of PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modifications

description: PhosphOrtholog input file for Dataset 1. (CSV 505Â kb)
DOI: 10.17863/cam.14336
title: Research data and further information supporting "A study of the dense uniform electron gas with high orders of coupled cluster"

description: This data set includes HANDE output files, python analysis scripts and text files with results. It also includes figures and readme files as well as additional information about the data.
DOI: 10.17863/cam.54795
title: Research data supporting "Computational Investigation of Copper Phosphides as Conversion Anodes for Lithium-Ion Batteries"

description: This record contains two entries: 'CuP_results.ipynb' and 'HarperCuPData.zip'. This dataset is used in the publication "Computational Investigation of Copper Phosphides as Conversion Anodes for Lithium-Ion Batteries" and is comprised of files generated by the density functional theory code CASTEP, the code for generating density of states OptaDOS, and the matador code for data analysis from both CASTEP and OptaDOS. - 'CuP_results.ipynb' is a Jupyter notebook that contains all of the analysis from the paper. This can also be found on GitHub at https://github.com/harpaf13/data.copper-phosphides and can be explored interactively on Binder. - 'HarperCuPData.zip' contains the outputs of all calculations mentioned in the paper. When inflated, it has the following folder structure: - 'Cu2P/': contains 3 sub-folders 'SOC', 'bandstructure' and 'phonon' containing calculations on the novel Fm-3m Cu2P phase presented in this paper. - 'Cu2P-Cu3P-phases/': contains '.res' files for the structures of Cu2P and Cu3P phases discussed in the text. - 'Cu2P-Ir2P-Rh2P-phases/': contains '.res' files for the structures of Cu2P, Ir2P and Rh2P phases discussed in the text. - 'Cu3P11-Cu2P7-CuP2/': contains '.res' files for the structures of Cu3P11, Cu2P7 and CuP2 phases discussed in the text. - 'CuPHull/': contains all '.res' and '.castep' files used to create the convex hull of Cu-P. - 'Ir2P/' and 'Rh2P/': both contain the outputs of spin-orbit corrected bandstructures for Ir2P and Rh2P. - 'PPhonon/': contains the output of phonon calculations on black phosphorus using the PBE+MBD* and SCAN functionals respectively. - 'TDHull/': contains the output of PBE phonon calculations performed on all low-lying structures on the Cu-P hull. - 'VoltageCurve/': contains all output of geometry optimization calculations for all the phases used to construct the voltage curves in the paper.
DOI: 10.6084/m9.figshare.c.3624221_d2
title: Additional file 3: Table S1. of Gene expression profile of intramuscular muscle in Nellore cattle with extreme values of fatty acid

description: Differentially expressed genes for C14:0. Table S2. Differentially expressed genes for C16:0. Table S3. Differentially expressed genes for C18:0. Table S4. Differentially expressed genes for C18:1 cis-9. Table S5.Differentially expressed genes for C18:2 cis-9trans-11. Table S6. Differentially expressed genes for C18:2 cis-6 cis -12 n6. Table S7. Differentially expressed genes for C18:3 n3. Table S8. Differentially expressed genes for SFA. Table S9. Differentially expressed genes for MUFA. Table S10. Differentially expressed genes for PUFA. Table S11. Differentially expressed genes for relationship between PUFA and SFA. Table S12. Differentially expressed genes. Table S13. Differentially expressed genes for n6. Table S14. Differentially expressed genes for the ratio of Ď 6/Ď 3. (XLS 486 kb)
DOI: 10.17863/cam.6711
title: Research data supporting "Mapping the visual brain areas susceptible to phosphene induction through brain stimulation."

description: SUMMARY: This project investigated where in the visual cortex single pulse TMS can induce phosphenes. Participants were sitting in a dark room looking at a fixation on a screen infront of them. Stimulations were applied in 6x8cm (48 targets) grid over the visual cortex (10 stimulations per target). After each stimulation participants gave a response whether a percept had occured. STIMULATION: Stimulation at different locations was randomized. Stimulation location names refer to the row and column position in the target grid. Note that the count of rows and columns for this grid starts at 0 (e.g. grid_target_0_3 = target at row 1, column 4). At each location stimulation was applied with a individual stimulation intensity: Participants phosphene threshold + intensity adjusted for underlying distance between the coil and the grey matter surface. BEHAVIORAL RESULTS: z = No phosphene 1 = phosphene, slightly visible 2 = phosphene, visible 3 = phosphene, perfectly visible. fMRI: fMRI data was used to define retinotopic areas + LOC and MT. The .prt files describe the stimuli that were used for the localizer scans. MRI anatomical scans were used for neuronavigation. The coordinates of stimulation targets relative to anatomical (ACPC aligned) scans are in the neuronav.xlsx files. Note that neuroimaging data and neuronavigation data are in different coordinate space. CONTROL EXPERIMENT: In two sessions stimulations were applied at locations in the Main Exp grid with varying current directions. Current directions are identified by their angle relative to the current direction used in the main experiment (i.e. lateral to medial). Example: Current direction p270 describes a current direction that was rotated 270 degrees counterclockwise relative to lateral to medial. This results in a superior to inferior current direction.
DOI: 10.6084/m9.figshare.c.3624239_d1
title: Additional file 4: of Prediction of peptidoglycan hydrolases- a new class of antibacterial proteins

description: Comparison of performance of the three approaches using known 250 peptidoglycan hydrolases. (XLSX 8Â kb)
DOI: 10.17863/cam.96599
title: Research data supporting "Improved fatigue resistance in transfer-printed flexible circuits embedded in polymer substrates with low melting temperatures"

description: This data supports the publication "Improved fatigue resistance in transfer-printed flexible circuits embedded in polymer substrates with low melting temperatures". It is composed primarily of mechanical test data, captured using a custom test set up, as well as image data, mostly composed of scanning electron microscope images. The dataset contains a readme file to further explain the individual data files.
DOI: 10.6084/m9.figshare.c.3624239_d2
title: Additional file 12: of Prediction of peptidoglycan hydrolases- a new class of antibacterial proteins

description: Evaluation of domain based approach for the prediction of peptidoglycan hydrolases. (TXT 801 bytes)
DOI: 10.6084/m9.figshare.c.3624239_d4
title: Additional file 3: of Prediction of peptidoglycan hydrolases- a new class of antibacterial proteins

description: Categorization of peptidoglycan hydrolases into four different classes on the basis of their site of action and composition of Negative Dataset as the fifth class. (XLSX 8Â kb)
DOI: 10.17863/cam.32463
title: Conformational search and DFT calculation data investigating effect of geometry quantity, quality and energy calculation method on structure elucidation performance

description: This dataset contains macromodel conformational search input and output files, Gaussian DFT and GIAO calculation input and output files, as well as NMR description files for DP4 analysis.
DOI: 10.17863/cam.78699
title: Research Data supporting ''First-Principles Dynamics of Fluorine Adsorption on Clean and Monohydrogenated Si{001}''

description: Molecular dynamics trajectories simulating F2 adsorption on Si{001} and Si{001}/H. Please see README file for details
DOI: 10.5281/zenodo.14444061
title: Results of the Termination Competition 2022 - Raw Data
DOI: 10.5281/zenodo.14444062
title: Results of the Termination Competition 2022 - Raw Data
DOI: 10.6084/m9.figshare.c.3624239_d12
title: Additional file 8: of Prediction of peptidoglycan hydrolases- a new class of antibacterial proteins

description: Performance of HyPe on independent metagenomic dataset. (XLSX 9Â kb)