cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.8t35qc
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "and" : [
 "StateProvince is 西藏",
 "TaxonKey is Juniperus tibetica Kom."
 ]
}

 The dataset includes 152 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011688-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26994418
title: Additional file 2 of DNA methylation of imprint control regions associated with Alzheimer’s disease in non-Hispanic Blacks and non-Hispanic Whites

description: Additional file 2: Table S2. The supplementary materials comprise additional details of the DMRs identified across three distinct comparison groups, the overall group (ALL), NHBs, and NHWs, including: Chromosome number: Indicating the chromosome on which the DMR is located. DMR coordinates: Providing the precise coordinates of the DMR on the chromosome. Mean ratio: The average methylation ratio across the DMR region. Cytosine number: Specifying the count of cytosines within the DMR. Number of CpG sites: Enumerating the quantity of CpG sites present within the DMR for both controls and AD patients. Methylation difference: Representing the difference in methylation levels between AD patients and controls. p-value: the statistical significance of the observed methylation differences. Hyper/hypomethylation status: Indicating whether the region is hypermethylated or hypomethylated in AD patients relative to controls.
DOI: 10.6084/m9.figshare.26994418.v1
title: Additional file 2 of DNA methylation of imprint control regions associated with Alzheimer’s disease in non-Hispanic Blacks and non-Hispanic Whites

description: Additional file 2: Table S2. The supplementary materials comprise additional details of the DMRs identified across three distinct comparison groups, the overall group (ALL), NHBs, and NHWs, including: Chromosome number: Indicating the chromosome on which the DMR is located. DMR coordinates: Providing the precise coordinates of the DMR on the chromosome. Mean ratio: The average methylation ratio across the DMR region. Cytosine number: Specifying the count of cytosines within the DMR. Number of CpG sites: Enumerating the quantity of CpG sites present within the DMR for both controls and AD patients. Methylation difference: Representing the difference in methylation levels between AD patients and controls. p-value: the statistical significance of the observed methylation differences. Hyper/hypomethylation status: Indicating whether the region is hypermethylated or hypomethylated in AD patients relative to controls.
DOI: 10.6084/m9.figshare.26994421
title: Additional file 3 of DNA methylation of imprint control regions associated with Alzheimer’s disease in non-Hispanic Blacks and non-Hispanic Whites

description: Additional file 3: Table S6. The supplementary materials comprise additional details of the DMRs shared between AD-associated DMRs identified in our study in brain stratified by race/ethnicity and the study by Breen et al. (2023) in blood [88].
DOI: 10.6084/m9.figshare.26994421.v1
title: Additional file 3 of DNA methylation of imprint control regions associated with Alzheimer’s disease in non-Hispanic Blacks and non-Hispanic Whites

description: Additional file 3: Table S6. The supplementary materials comprise additional details of the DMRs shared between AD-associated DMRs identified in our study in brain stratified by race/ethnicity and the study by Breen et al. (2023) in blood [88].
DOI: 10.15468/m83x45
title: Fungario QCAM

description: El Fungario QCAM forma parte de un grupo importante de museos y colecciones biológicas de la PUCE albergadas dentro de la Escuela de Ciencias Biológicas. La colección de hongos actualmente cuenta con cerca de 7700 especímenes ecuatorianos representantes de varias localidades del país, haciendo de ésta la colección más grande de hongos del Ecuador. También cuenta con colecciones vivas de cultivos de hongos y una colección de fitopatógenos criopreservados, tejidos y extracciones de ADN, las cuales constituyen un banco de genoma de invaluable importancia. 

El Fungario es una entidad que se dedica a la investigación científica, formación de investigadores, y a salvaguardar una parte importante de la diversidad biológica.
La colección de hongos de la PUCE se inició como parte de las muestras albergadas en el Herbario QCA en la Escuela Ciencias Biológicas. En el año 2000, la colección de hongos se separó del herbario para formar el Fungario QCAM. La intención fue mejorar la calidad de la colección de hongos para permitir estudiar la vasta diversidad micológica del Ecuador. 

Dos importantes colaboraciones internacionales contribuyeron de forma significativa al aumento del número de especímenes en el Fungario. La primera, con la British Mycological Society en 1993 dentro de la Reserva de Producción Faunística Cuyabeno, y la segunda, con la Universidad de Copenhauge, Dinamarca durante los años 2002-2004, en varias localidades de la costa, sierra y oriente del Ecuador. Como resultado de esta última colaboración se lograron identificar hasta especie a un gran número de colecciones, y formar una base de datos con imágenes de muchas de las muestras. Se creó una página web donde se encuentra información importante sobre la diversidad micológica del Ecuador (https://www.mycokey.com/Ecuador.html), pero esta no está bajo la administración del Fungario QCAM. Proyectos de investigación relativos a la biodiversidad de hongos dentro de parques nacionales del Ecuador han contribuido de manera importante en el incremento del número de colecciones. Estos proyectos cuentan con la participación de investigadores y estudiantes tanto de la Escuela de Ciencias Biológicas como de otras universidades dentro y fuera del país.
DOI: 10.6084/m9.figshare.26994424
title: Additional file 1 of Dysregulation of innate immune signaling in animal models of spinal muscular atrophy

description: Additional file 1: Table S1–S3.
DOI: 10.6084/m9.figshare.26994424.v1
title: Additional file 1 of Dysregulation of innate immune signaling in animal models of spinal muscular atrophy

description: Additional file 1: Table S1–S3.
DOI: 10.6084/m9.figshare.26994427
title: Additional file 2 of Dysregulation of innate immune signaling in animal models of spinal muscular atrophy

description: Additional file 2: Table S4–S5.
DOI: 10.6084/m9.figshare.26994427.v1
title: Additional file 2 of Dysregulation of innate immune signaling in animal models of spinal muscular atrophy

description: Additional file 2: Table S4–S5.
DOI: 10.6084/m9.figshare.26994430
title: Additional file 3 of Dysregulation of innate immune signaling in animal models of spinal muscular atrophy

description: Additional file 3: Table S6–S10.
DOI: 10.6084/m9.figshare.26994430.v1
title: Additional file 3 of Dysregulation of innate immune signaling in animal models of spinal muscular atrophy

description: Additional file 3: Table S6–S10.
DOI: 10.6084/m9.figshare.26994433
title: Additional file 4 of Dysregulation of innate immune signaling in animal models of spinal muscular atrophy

description: Additional file 4: Table S11.
DOI: 10.6084/m9.figshare.26994436
title: Additional file 5 of Dysregulation of innate immune signaling in animal models of spinal muscular atrophy

description: Additional file 5: Table S12-S13.
DOI: 10.6084/m9.figshare.26994436.v1
title: Additional file 5 of Dysregulation of innate immune signaling in animal models of spinal muscular atrophy

description: Additional file 5: Table S12-S13.
DOI: 10.6084/m9.figshare.26994433.v1
title: Additional file 4 of Dysregulation of innate immune signaling in animal models of spinal muscular atrophy

description: Additional file 4: Table S11.
DOI: 10.6084/m9.figshare.26994442
title: Additional file 1 of Sex-dependent effects of chronic intermittent hypoxia: implication for obstructive sleep apnea

description: Additional file 1: Table S1. Circulating steroid hormones. Plasma steroid hormones were analyzed by high throughput multiplex. All values presented as mean ± SD. Analyzed by 3-way ANOVA with Fisher’s LSD multiple comparisons tests, n = 5–10/group. CIH: Chronic intermittent hypoxia; MT: MitoTEMPOL. Table S2. Morris water maze results. Latency and pathlength (cm) for rats to find the target location during the probe trial. Learning index was generated as the sum total of the average latency to the target of all trials in blocked means for each training day. All values presented as mean ± SD. Analyzed by 3-way ANOVA with Fisher’s LSD multiple comparisons tests, n = 5–8/group. CIH: Chronic intermittent hypoxia; MT: MitoTEMPOL. Table S3. Fine motor behavior in modified open field. Rearing behavior and footfalls in an open field arena (40.64 × 40.64 × 38.1 cm) modified with a 2 cm elevated wire mesh platform. Rears were categorized as assisted if the rat used forelimbs to brace against side of open field arena. All values presented as mean ± SD. Data for unassisted rears was square root transformed for analysis. Analyzed by 3-way ANOVA with Fisher’s LSD multiple comparisons tests, n = 6–13/group. CIH: Chronic intermittent hypoxia; MT: MitoTEMPOL.
DOI: 10.6084/m9.figshare.26994442.v1
title: Additional file 1 of Sex-dependent effects of chronic intermittent hypoxia: implication for obstructive sleep apnea

description: Additional file 1: Table S1. Circulating steroid hormones. Plasma steroid hormones were analyzed by high throughput multiplex. All values presented as mean ± SD. Analyzed by 3-way ANOVA with Fisher’s LSD multiple comparisons tests, n = 5–10/group. CIH: Chronic intermittent hypoxia; MT: MitoTEMPOL. Table S2. Morris water maze results. Latency and pathlength (cm) for rats to find the target location during the probe trial. Learning index was generated as the sum total of the average latency to the target of all trials in blocked means for each training day. All values presented as mean ± SD. Analyzed by 3-way ANOVA with Fisher’s LSD multiple comparisons tests, n = 5–8/group. CIH: Chronic intermittent hypoxia; MT: MitoTEMPOL. Table S3. Fine motor behavior in modified open field. Rearing behavior and footfalls in an open field arena (40.64 × 40.64 × 38.1 cm) modified with a 2 cm elevated wire mesh platform. Rears were categorized as assisted if the rat used forelimbs to brace against side of open field arena. All values presented as mean ± SD. Data for unassisted rears was square root transformed for analysis. Analyzed by 3-way ANOVA with Fisher’s LSD multiple comparisons tests, n = 6–13/group. CIH: Chronic intermittent hypoxia; MT: MitoTEMPOL.
DOI: 10.6084/m9.figshare.26994451
title: Additional file 2 of A systematic review on the relationship between socioeconomic conditions and emotional disorder symptoms during Covid-19: unearthing the potential role of economic concerns and financial strain

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.26994451.v1
title: Additional file 2 of A systematic review on the relationship between socioeconomic conditions and emotional disorder symptoms during Covid-19: unearthing the potential role of economic concerns and financial strain

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.26994460
title: Additional file 1 of Histone proteoform analysis reveals epigenetic changes in adult mouse brown adipose tissue in response to cold stress

description: Additional file 1: High confidence transcriptional target (HCT) intersection analysis dataset. WT: wild type. TN: thermoneutral. RT: room temperature. SC: severe cold.
DOI: 10.6084/m9.figshare.26994460.v1
title: Additional file 1 of Histone proteoform analysis reveals epigenetic changes in adult mouse brown adipose tissue in response to cold stress

description: Additional file 1: High confidence transcriptional target (HCT) intersection analysis dataset. WT: wild type. TN: thermoneutral. RT: room temperature. SC: severe cold.
DOI: 10.6084/m9.figshare.26994463
title: Additional file 2 of Histone proteoform analysis reveals epigenetic changes in adult mouse brown adipose tissue in response to cold stress

description: Additional file 2: Alternative splice variants in BAT from severe cold vs thermoneutral housed mice. A3SS: alternative 3’ splice site. A5SS: alternative 5’ splice site. MXE: mutually exclusive exons. RI: retained intron. SE: skipped exon.
DOI: 10.6084/m9.figshare.26994463.v1
title: Additional file 2 of Histone proteoform analysis reveals epigenetic changes in adult mouse brown adipose tissue in response to cold stress

description: Additional file 2: Alternative splice variants in BAT from severe cold vs thermoneutral housed mice. A3SS: alternative 3’ splice site. A5SS: alternative 5’ splice site. MXE: mutually exclusive exons. RI: retained intron. SE: skipped exon.
DOI: 10.6084/m9.figshare.26994466
title: Additional file 3 of Histone proteoform analysis reveals epigenetic changes in adult mouse brown adipose tissue in response to cold stress

description: Additional file 3: RNA-Seq differentially expressed gene (DEG) reanalysis and RRBS differentially methylated gene (DMG) and differentially methylated promoter (DMP) analyses. TN: thermoneutral. RT: room temperature. SC: severe cold.
DOI: 10.6084/m9.figshare.26994466.v1
title: Additional file 3 of Histone proteoform analysis reveals epigenetic changes in adult mouse brown adipose tissue in response to cold stress

description: Additional file 3: RNA-Seq differentially expressed gene (DEG) reanalysis and RRBS differentially methylated gene (DMG) and differentially methylated promoter (DMP) analyses. TN: thermoneutral. RT: room temperature. SC: severe cold.
DOI: 10.6084/m9.figshare.26994469
title: Additional file 4 of Histone proteoform analysis reveals epigenetic changes in adult mouse brown adipose tissue in response to cold stress

description: Additional file 4: Summary and statistical analysis of differences between BAT and liver histone H3.2 and H4 post-translational modifications (PTMs), binary PTM combinations, and proteoforms in each housing temperature. TN: thermoneutral. RT: room temperature. SC: severe cold.
DOI: 10.6084/m9.figshare.26994472
title: Additional file 5 of Histone proteoform analysis reveals epigenetic changes in adult mouse brown adipose tissue in response to cold stress

description: Additional file 5: BAT and liver histone H3.2 discrete post-translational modifications (PTMs), binary PTM combinations, and proteoform percent abundance for each biological replicate. TN: thermoneutral. RT: room temperature. SC: severe cold.
DOI: 10.6084/m9.figshare.26994472.v1
title: Additional file 5 of Histone proteoform analysis reveals epigenetic changes in adult mouse brown adipose tissue in response to cold stress

description: Additional file 5: BAT and liver histone H3.2 discrete post-translational modifications (PTMs), binary PTM combinations, and proteoform percent abundance for each biological replicate. TN: thermoneutral. RT: room temperature. SC: severe cold.
DOI: 10.6084/m9.figshare.26994469.v1
title: Additional file 4 of Histone proteoform analysis reveals epigenetic changes in adult mouse brown adipose tissue in response to cold stress

description: Additional file 4: Summary and statistical analysis of differences between BAT and liver histone H3.2 and H4 post-translational modifications (PTMs), binary PTM combinations, and proteoforms in each housing temperature. TN: thermoneutral. RT: room temperature. SC: severe cold.
DOI: 10.6084/m9.figshare.26994475
title: Additional file 6 of Histone proteoform analysis reveals epigenetic changes in adult mouse brown adipose tissue in response to cold stress

description: Additional file 6: BAT and liver histone H4 discrete post-translational modifications (PTMs), binary PTM combinations, and proteoform percent abundance for each biological replicate. TN: thermoneutral. RT: room temperature. SC: severe cold.
DOI: 10.6084/m9.figshare.26994475.v1
title: Additional file 6 of Histone proteoform analysis reveals epigenetic changes in adult mouse brown adipose tissue in response to cold stress

description: Additional file 6: BAT and liver histone H4 discrete post-translational modifications (PTMs), binary PTM combinations, and proteoform percent abundance for each biological replicate. TN: thermoneutral. RT: room temperature. SC: severe cold.
DOI: 10.6084/m9.figshare.26994478
title: Additional file 7 of Histone proteoform analysis reveals epigenetic changes in adult mouse brown adipose tissue in response to cold stress

description: Additional file 7: Table S1. Average body weights, fat mass, lean mass, tissue weights, and nonfasting glucose of male C57BL/6J mice after exposure to thermoneutral or chronic cold housing temperatures. Results shown are mean ± SEM. n = 20 per group. One-way ANOVA testing was conducted for each parameter, and p-values are indicated as follows: *p &lt; 0.05 for SC vs TN, #p &lt; 0.05 for SC vs RT and TN, and @p &lt; 0.05 for RT vs TN. BAT: brown adipose tissue. gWAT: gonadal white adipose tissue. TN: thermoneutral. RT: room temperature. SC: severe cold.
DOI: 10.6084/m9.figshare.26994478.v1
title: Additional file 7 of Histone proteoform analysis reveals epigenetic changes in adult mouse brown adipose tissue in response to cold stress

description: Additional file 7: Table S1. Average body weights, fat mass, lean mass, tissue weights, and nonfasting glucose of male C57BL/6J mice after exposure to thermoneutral or chronic cold housing temperatures. Results shown are mean ± SEM. n = 20 per group. One-way ANOVA testing was conducted for each parameter, and p-values are indicated as follows: *p &lt; 0.05 for SC vs TN, #p &lt; 0.05 for SC vs RT and TN, and @p &lt; 0.05 for RT vs TN. BAT: brown adipose tissue. gWAT: gonadal white adipose tissue. TN: thermoneutral. RT: room temperature. SC: severe cold.
DOI: 10.6084/m9.figshare.26994481
title: Additional file 8 of Histone proteoform analysis reveals epigenetic changes in adult mouse brown adipose tissue in response to cold stress

description: Additional file 8: Table S2. Results of method optimization of histone isolation from BAT. Color scheme indicates the highest yield of histones in green (2) and the lowest yield of histones in red. Mass histone is calculated using offline HPLC peak area and standard curve.
DOI: 10.6084/m9.figshare.26994481.v1
title: Additional file 8 of Histone proteoform analysis reveals epigenetic changes in adult mouse brown adipose tissue in response to cold stress

description: Additional file 8: Table S2. Results of method optimization of histone isolation from BAT. Color scheme indicates the highest yield of histones in green (2) and the lowest yield of histones in red. Mass histone is calculated using offline HPLC peak area and standard curve.
DOI: 10.6084/m9.figshare.26994484
title: Additional file 9 of Histone proteoform analysis reveals epigenetic changes in adult mouse brown adipose tissue in response to cold stress

description: Additional file 9: Table S3. Mass of histone H3.2 and H4 obtained from (a) BAT and (b) liver at different housing temperatures. Mass histone is calculated using offline HPLC peak area and standard curve. Results shown are mean ± SEM. n = 4–5 per group. TN: thermoneutral. RT: room temperature. SC: severe cold.
DOI: 10.6084/m9.figshare.26994484.v1
title: Additional file 9 of Histone proteoform analysis reveals epigenetic changes in adult mouse brown adipose tissue in response to cold stress

description: Additional file 9: Table S3. Mass of histone H3.2 and H4 obtained from (a) BAT and (b) liver at different housing temperatures. Mass histone is calculated using offline HPLC peak area and standard curve. Results shown are mean ± SEM. n = 4–5 per group. TN: thermoneutral. RT: room temperature. SC: severe cold.
DOI: 10.6084/m9.figshare.26994487
title: Additional file 1 of Unprecedented variation pattern of plastid genomes and the potential role in adaptive evolution in Poales

description: Additional file 1: Tables S1–S8. Table S1: Collection, assembly, and accession numbers information of 93 Poales species. Table S2: Features of 93 Poales species plastomes. Table S3: Primes used for validation of four plastomes (Anarthria humilis, Isolepis setacea, Xyris capensis and X. capensis var. schoenoides) and sequence identity information of Sanger sequencing. Table S4: The permutation of number coded LCBs, the inversion numbers and inversion regions for each plastome. Table S5: Corresponding nucleotide models using the baseml of PAML for the 80PG-half matrix. Table S6: The positive selection test based on branch-site model. Table S7: Selective pressure analysis based on the free ratio model on the genes lost in certain lineages. Table S8: Collection information, sequencing information of plastid data for all taxa sampled used in phylogenetic tree.
DOI: 10.6084/m9.figshare.26994487.v1
title: Additional file 1 of Unprecedented variation pattern of plastid genomes and the potential role in adaptive evolution in Poales

description: Additional file 1: Tables S1–S8. Table S1: Collection, assembly, and accession numbers information of 93 Poales species. Table S2: Features of 93 Poales species plastomes. Table S3: Primes used for validation of four plastomes (Anarthria humilis, Isolepis setacea, Xyris capensis and X. capensis var. schoenoides) and sequence identity information of Sanger sequencing. Table S4: The permutation of number coded LCBs, the inversion numbers and inversion regions for each plastome. Table S5: Corresponding nucleotide models using the baseml of PAML for the 80PG-half matrix. Table S6: The positive selection test based on branch-site model. Table S7: Selective pressure analysis based on the free ratio model on the genes lost in certain lineages. Table S8: Collection information, sequencing information of plastid data for all taxa sampled used in phylogenetic tree.
DOI: 10.6084/m9.figshare.26994490
title: Additional file 2 of Unprecedented variation pattern of plastid genomes and the potential role in adaptive evolution in Poales

description: Additional file 2: Figs. S1–S9. Fig. S1. The plastomic configuration of Poales. Numbers represent possible configurations based on the results of assembly software GetOrganelle. Fig. S2. Plastome gene maps of Poales. Genes on the inside and outside of the map are transcribed clockwise and transcribed counterclockwise, respectively. Different color genes represent different function. Fig. S3. Variation of GC content in each family of Poales. The graph displays the trends in GC content, wherein the purple dots indicate the mean value and the black lines connecting them represent GC content variation. Fig. S4. Verification of four species (Anarthria humilis, Isolepis setacea, Xyris capensis and X. capensis var. schoenoides plastomes) by PCR and corresponding readmapping graphs. The IR regions are indicated by black squares and the direction is indicated by a red arrow. The corresponding sequences of validation are denoted with blue border and the names are listed in blue text. Fig. S5. Heatmap of gene and intron content of 93 plastomes in Poales. Different colors represent gene deletions, gene copy number, the number of intron deletions and pseudogenes. The color box on the left represents the in formation of each family and clade of Poales, and the species with red text are incomplete plastomes. The yellow color bar at the bottom of the heatmap represents that these genes are all present in all plastomes of Poales, which have no mutation. Fig. S6. Scatter plot of repeat length for each family of Poales. Fig. S7. The Poales phylogram is based on 80PG-half matrix. Fig. S8. Correlation analysis of repeat number and plastomic size. The shaded area indicates 95% confidence intervals. Fig. S9. A Correlation analysis of repeat number and inversion number. B Correlation analysis of inversion number and arrangement distance. The shaded area indicates 95% confidence intervals.