cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.1120244
title: OpenAIRE and FAIR Data Expert Group survey about Horizon 2020 template for Data Management Plans

description: This dataset is published in 2017 by the OpenAIRE project and the FAIR Data Expert Group. It contains two survey data files, two pdf-files summarising the results in a report and an infographic, and a Readme.txt file. The OpenAIRE project supports the open science ambitions of the European Commission. The project and in particular the Research Data Management team provide support, training and information on the Open Research Data Pilot. In this context, a survey was carried out to collect feedback on the Horizon 2020 template for Data Management Plans (DMPs). The team collaborated with the FAIR data expert group, which is providing recommendations to the European Commission on turning FAIR data into reality. One of the specific tasks of the Expert Group is contributing to an evaluation of the Horizon 2020 approach to DMPs, including future revisions of the template and the development of additional sector/ discipline-specific guidance. The aim of the survey was to collect experiences of researchers and DMP reviewers with the DMP template and guidelines on FAIR data management in Horizon 2020. The survey assesses the usefulness of the guidelines and any aspects that are confusing and unclear to determine what improvements can be made. Feedback was sought from both researchers and research support staff. The survey was initially scheduled to run from 22 May to 21 June 2017. Several organisations were asked to help announce the survey, including OpenAIRE’s National Open Access Desks, the FAIR data expert group, FOSTER, LIBER, and the RDA Interest Group on Active DMPs. When the first survey responses showed only a small share of researchers, more stakeholders were contacted to specifically target this community. The European Research Area was approached, whose project officers circulated the survey call among award holders of EC projects. Early-career researchers were also informed through the YEAR network and EURODOC. This resulted in an extension of the survey to 21 July 2017. At the close of the survey on 21 July 2017, a total number of 289 responses were reached. 50% of the respondents indicated that they were researchers, and 60% that they were (also) research support staff. OpenAIRE and the FAIR data expert group are very pleased with this balanced outcome and would like to thank all colleagues and organisations who promoted the survey, as well as everyone who took part in it.
DOI: 10.5066/f75t3hn9
title: Data set used to develop a conceptual framework for effectively anticipating water-quality changes resulting from changes in agricultural activities

description: Agricultural activities can impact water quality and the health of aquatic ecosystems. A conceptual framework was developed that combined generalized concepts on the movement of water, the environmental behavior of chemicals and eroded soil, and the designed functions of various agricultural activities. The framework addresses the impacts on water quality of a broad range of agricultural chemicals and sediment across a variety of hydrologic settings. This USGS data release contains 2013 streamflow, baseflow, and precipitation data from three hydrologically-diverse streams in the United States used to help develop the framework. Chesterville Branch near Crumpton, MD, (USGS Site 01493112) had substantial baseflow throughout the year with increased streamflow within a day of rainfall. Indian Creek at State Line RD, Leawood, KS (USGS Site 06893390) was a fast flow-dominated urban steam that was not well connected to shallow groundwater. The watershed of Leary-Weber Ditch at Mohawk, IN (USGS Site 03361638 had an extensive subsurface drainage network. The hydrographs were separated into baseflow and non-baseflow components (surrogates for slowflow and fastflow) by the method of Eckhardt (2005) using the approximation of the Collischonn and Fan (2013) for one of the fitting parameters.
DOI: 10.5066/f7gh9gf5
title: Data sets for: Variations on a method for evaluating decadal-scale changes in the groundwater quality of two GAMA coastal study units 2004-2014, California GAMA Priority Basin Project

description: The U.S. Geological Survey collected samples from 50 public supply wells during two distinct sampling episodes (2004-2005 and 2014) on the North-Central California coast. During each sampling episode, the samples were analyzed for 160 water-quality constituents, including water-quality indicators, nutrients, major and minor ions, trace elements, volatile organic compounds, and pesticide compounds. The paired-sample results were submitted to an evaluation method to determine whether or not step trends had occurred in the concentrations of each constituent. Quality-control samples were collected at a subset of the wells. The datasets presented here consist of a list and description of the 160 constituents, an Excel workbook which details the step trend evaluation method, and a summary of the quality-control data results.
DOI: 10.5066/f7h994dt
title: Distribution and seasonal differences in Pacific Lamprey and Lampetra spp eDNA across 18 Puget Sound watersheds, 2014 and 2015

description: These data contain all the raw results needed to support the conclusions for the final product. These data are water sampling locations (latitude and longitude), date of water sampling, quantitative PCR values for each water sample, and stream flow at USGS stream gauging stations on sampling day.
DOI: 10.5066/f7xs5smd
title: Regression and load estimates for the tributary nutrient and sediment monitoring program on the Great Lakes, 2011-2013

description: Nutrient and sediment regression information (diagnostics and coefficients) and estimated load data from 30 tributaries to the Great Lakes, beginning of the program (water year 2011) to water year 2013.
DOI: 10.13012/b2idb-2626814_v3
title: Data from: Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss

description: This repository includes scripts and datasets for the paper, "Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss."
DOI: 10.5281/zenodo.3946686
title: Neonatal 3T PRESS Basis Sets (MARBLE)

description: Neonatal 3T basis sets used for the multi-site MARBLE study, simulated using Vespa. These correspond to the vendor-provided PRESS sequences used on Siemens, Philips and GE scanners, as described in Lally PJ, Montaldo P et al. Lancet Neuro 2019. For each vendor, a basis set is provided for each of TE=60ms and TE=288ms. File types: .RAW files (compressed into RAW.zip) - includes additional metabolites which were not included in the final basis set, but could still be useful for other neonatal MRS studies.<br> <em>*In GSH, glycine component has an additional 10Hz Gaussian broadening applied, following Kaiser LG. et al. JMR 202.2 (2010): 259-266*</em> .in files - makebasis input file used to generate the fitting basis set from .RAW files .basis files - fitting basis set.<br> <em>*For MARBLE, the following metabolites were omitted from the fit with 'CHOMIT' control parameters: AcAc, Acn, Etm, Ser. The following metabolites were also combined with 'CHCOMB' due to their strong correlation during fitting: Thr+Lac, Asc+GSH*</em> .pdf files - visualisation of the basis set components Some specific details: Narrow FWHM (1Hz Gaussian broadening) to allow accurate quantification of sharp linewidth neonatal spectra and undoped MRS phantoms. Two versions of each basis set: i) each metabolite has a single component in the basis set (as usual); ii) singlet peaks of NAA, Cho, Cr are separated from other resonances to allow two-point T2 relaxometry between TEs (as used for MARBLE) Ideal RF pulses are assumed TE1,TE2 are adjusted according to vendor/TE Reference singlet at 0ppm <em>If using this to calculate peak area ratios at TE=288ms, multiply the LCModel provided 'concentrations' by a factor of the number of protons that contribute to each peak (i.e. 3 for NAA singlet @ 2.0ppm, 3 for Cr singlet @ 3.0ppm, 3 for Lac+Thr doublet @ 1.3ppm, 9 for Cho singlet @ 3.2ppm) - this will give you relative peak areas which are consistently scaled. </em> Contact: p.lally [at] imperial.ac.uk
description: {"references": ["Lally P. J., Montaldo P et al. \"Magnetic resonance spectroscopy assessment of brain injury after moderate hypothermia in neonatal encephalopathy: a prospective multicentre cohort study.\" The Lancet Neurology 18.1 (2019): 35-45.", "Soher, B. J., et al. \"VeSPA: integrated applications for RF pulse design, spectral simulation and MRS data analysis.\" Proc Int Soc Magn Reson Med. Vol. 19. No. 19. 2011.", "Kaiser, L. G., et al. \"1H MRS detection of glycine residue of reduced glutathione in vivo.\" Journal of Magnetic Resonance 202.2 (2010): 259-266."]}
DOI: 10.5281/zenodo.3946685
title: Neonatal 3T PRESS Basis Sets (MARBLE)

description: Neonatal 3T basis sets used for the multi-site MARBLE study, simulated using Vespa. These correspond to the vendor-provided PRESS sequences used on Siemens, Philips and GE scanners, as described in Lally PJ, Montaldo P et al. Lancet Neuro 2019. For each vendor, a basis set is provided for each of TE=60ms and TE=288ms. File types: .RAW files (compressed into RAW.zip) - includes additional metabolites which were not included in the final basis set, but could still be useful for other neonatal MRS studies.<br> <em>*In GSH, glycine component has an additional 10Hz Gaussian broadening applied, following Kaiser LG. et al. JMR 202.2 (2010): 259-266*</em> .in files - makebasis input file used to generate the fitting basis set from .RAW files .basis files - fitting basis set.<br> <em>*For MARBLE, the following metabolites were omitted from the fit with 'CHOMIT' control parameters: AcAc, Acn, Etm, Ser. The following metabolites were also combined with 'CHCOMB' due to their strong correlation during fitting: Thr+Lac, Asc+GSH*</em> .pdf files - visualisation of the basis set components Some specific details: Narrow FWHM (1Hz Gaussian broadening) to allow accurate quantification of sharp linewidth neonatal spectra and undoped MRS phantoms. Two versions of each basis set: i) each metabolite has a single component in the basis set (as usual); ii) singlet peaks of NAA, Cho, Cr are separated from other resonances to allow two-point T2 relaxometry between TEs (as used for MARBLE) Ideal RF pulses are assumed TE1,TE2 are adjusted according to vendor/TE Reference singlet at 0ppm <em>If using this to calculate peak area ratios at TE=288ms, multiply the LCModel provided 'concentrations' by a factor of the number of protons that contribute to each peak (i.e. 3 for NAA singlet @ 2.0ppm, 3 for Cr singlet @ 3.0ppm, 3 for Lac+Thr doublet @ 1.3ppm, 9 for Cho singlet @ 3.2ppm) - this will give you relative peak areas which are consistently scaled. </em> Contact: p.lally [at] imperial.ac.uk
description: {"references": ["Lally P. J., Montaldo P et al. \"Magnetic resonance spectroscopy assessment of brain injury after moderate hypothermia in neonatal encephalopathy: a prospective multicentre cohort study.\" The Lancet Neurology 18.1 (2019): 35-45.", "Soher, B. J., et al. \"VeSPA: integrated applications for RF pulse design, spectral simulation and MRS data analysis.\" Proc Int Soc Magn Reson Med. Vol. 19. No. 19. 2011.", "Kaiser, L. G., et al. \"1H MRS detection of glycine residue of reduced glutathione in vivo.\" Journal of Magnetic Resonance 202.2 (2010): 259-266."]}
DOI: 10.4119/unibi/2916617
title: Research Data for publication: Optimal integration of actions and their visual effects is based on both online and prior causality evidence
DOI: 10.4119/unibi/2916620
title: The effect of the geometry of located objects on spatial language comprehension

description: The data have been collected in the context of a study aiming to investigate which geometric properties of the located object affects the apprehension of a spatial description and disentangle whether the information concerning its orientation (axis), its direction (front/rear) or a combination of these two factors, gives rise to conflict. In the repository people can find accuracy as well as latency data. R scripts used for Multinomial Logistic and Multilevel analyses have also been included.
DOI: 10.5066/f70g3hwf
title: Geospatial output data from the RVR Meander model of the Wabash River near the Interstate 64 Bridge near Grayville, Illinois

description: Natural river channels continually evolve and change shape over time. As a result, channel evolution or migration can cause problems for bridge structures that are fixed in the flood plain. A once-stable bridge structure that was uninfluenced by a rivers shape could be encroached upon by a migrating river channel. The potential effect of the actively meandering Wabash River on the Interstate 64 (I64) Bridge at the border with Indiana near Grayville, Illinois, was studied using a river migration model called RVR Meander (RVR Meander, 2011). RVR Meander is a toolbox that can be used to model river channel meander migration with physically based bank erosion methods. This study assesses the Wabash River meandering processes through predictive modeling of natural meandering over the next 100 years, climate change effects through increased river flows, and bank protection measures near the I64 Bridge. The calibrated model was used to run three scenarios. The first scenario investigated the natural meandering of the Wabash River over the next 100 years (20132113). The second scenario predicted potential climate change effects on the meander migration of the Wabash River by increasing the model bankfull flow by 10 percent. The third scenario investigated how proposed bank armoring on the right bank of the Wabash River just north of the I64 Bridge would influence the meandering pattern. Model outputs include one-dimensional shapefiles of the migrated centerlines at defined increments. RVR Meander, 2011, River meander migration software, accessed June 2016 at http://www.rvrmeander.org/software.html.
DOI: 10.5066/f78p5zcd
title: Geospatial datasets and model for the flood-inundation study of the Wabash River near the Interstate 64 Bridge near Grayville, Illinois

description: Natural river channels continually evolve and change shape over time. As a result, channel evolution or migration can cause problems for bridge structures that are fixed in the flood plain. A once-stable bridge structure that was uninfluenced by a rivers shape could be encroached upon by a migrating river channel. The potential effect of the actively meandering Wabash River on the Interstate 64 (I64) Bridge at the border with Indiana near Grayville, Illinois, was studied using a river migration model called RVR Meander (RVR Meander, 2011). RVR Meander is a toolbox that can be used to model river channel meander migration with physically based bank erosion methods. This study assesses the Wabash River meandering processes through predictive modeling of natural meandering over the next 100 years, climate change effects through increased river flows, and bank protection measures near the I64 Bridge. The calibrated model was used to run three scenarios. The first scenario investigated the natural meandering of the Wabash River over the next 100 years (20132113). The second scenario predicted potential climate change effects on the meander migration of the Wabash River by increasing the model bankfull flow by 10 percent. The third scenario investigated how proposed bank armoring on the right bank of the Wabash River just north of the I64 Bridge would influence the meandering pattern. Model outputs include one-dimensional shapefiles of the migrated centerlines at defined increments. RVR Meander, 2011, River meander migration software, accessed June 2016 at http://www.rvrmeander.org/software.html.
DOI: 10.5285/e3616d28-759e-4cca-8fae-fe398f9552ba
title: Annual melt onset, duration and end dates for the Antarctic Peninsula derived from Quikscat and ASCAT scatterometer Enhanced Resolution data, 1999-2017

description: Surface melt onset, duration and end date for the Antarctic Peninsula from 1999/2000 to 2016/2017 at a spatial resolution of 2 km, derived from scatterometer data. Years 1999/2000 to 2008/09 are based on QSCAT data and 2009/10 to 2016/17 on ASCAT data.
description: Melt was not defined if the winter mean backscatter was greater than -10 dB to avoid calculating melt over noisy backscatter regions such as the Peninsula mountains. ASCAT input data were only available until 21/06/2017 but we assume that this allows all melt within austral year 2016/17 to have been detected. 2 km horizontal resolution based on over sampling of 4.5 km scatterometer data. Enhanced Resolution scatterometer data were downloaded from the BYU Center for Remote Sensing ftp site (ftp.scp.byu.edu/pub/data/). We used the 'qmsv' QSCAT product (morning, slice, vertically polarizied) and the 'msfa' ASCAT product (all pass, vertically polarized, slice equivalent). The data were processed to identify annual melt onset, duration, and end dates. A melt day is defined when backscatter falls below the previous winter (June, July, August) mean by more than 3 dB (QSCAT), or 2.7 dB (ASCAT). Three consecutive days of melt or refreeze are required to define melt onset or end, respectively. Austral year begins August 1st and onset and end day numbers are relative to this date. Years 1999/2000 to 2008/09 are based on QSCAT data and 2009/10-2016/17 on ASCAT data.
DOI: 10.17863/cam.17379
title: Dataset for "Designing A Shock Control Bump Array For A Transonic Wing Body Model"

description: TBC
description: EPSRC
DOI: 10.5066/f7r20zjw
title: Disentangling the effects of low pH and metal mixture toxicity on macroinvertebrate diversity: datasets

description: This dataset is comprised of water quality data and benthic macroinvertebrate data collected from basins in Colorado, USA, and Finland. The data includes ancillary water quality characteristics but also a suite of trace metals observed at each site. Also included are modeled outputs that characterize the bioavailability of each trace metal to a biotic ligand. These data were used to explore the importance of metal toxicity and pH as stressors on benthic macroinvertebrates characterized as the number of unique Ephemeroptera + Plecoptera + Trichoptera genera observed at each site. An interpretive summary of the work follows. One of the primary goals of biological assessment of rivers is to identify whether contaminants or other stressors limit the ecological potential of running waters. Quantitative relationships between species richness and environmental gradients are useful to better understand biodiversity patterns. Many studies have focused on the effects of pH and high metals concentration on freshwater macroinvertebrate community but, due to data limitation and the lack of tools, the ecological effects of metals mixture in streams are less studied and still unclear. We address an old question: is it the low pH or the metals that are deleterious for stream ecosystems? With new tools, we can achieve improved understanding of the true importance of the two stressors. Our study quantified the limiting effects of pH and chronic metal toxicity for macroinvertebrate community richness. We verified that current environmental quality standards for metals are protective of aquatic biodiversity and proved that pH has a direct limiting effect on richness and it not acts only via modifying the availability and the toxicity of metals. These questions were applied to a dataset spanning two continents and diversity of geologies and ecosystems providing a broad basis for understanding how physico-chemical conditions limit global freshwater biodiversity.
DOI: 10.5066/f7dv1hvr
title: GLM model data sets used to evaluate changes in the hydrodynamics of Anvil Lake, Wisconsin

description: Interannual differences in the water quality of Anvil Lake, WI, were examined to determine how water level and climate affect the hydrodynamics and trophic state of shallow lakes, and their importance compared to anthropogenic changes in the watershed. To determine how changes in water level may affect these processes, the General Lake Model (GLM) was used to simulate how the lakes thermal structure should change in response to changes in water level using R. This dataset includes the data inputs to the GLM model and the direct outputs from the model. Model Calibration (GLM_CalibrationZ); Simulation of with Deep Lake and Cold Weather (GLM_Deep_Cold_SimulationZ); Simulation of with Deep Lake and Hot Weather (GLM_Deep_Hot_SimulationZ); Simulation of with Shallow and Hot Weather (GLM_Shallow_Hot_SimulationZ); Simulation of with Shallow Lake and Cold Weather (GLM_Shallow_Cold_SimulationZ).
DOI: 10.5281/zenodo.1146637
title: Diffraction images for PWWP1 domain of NSD2 in complex with MR837

description: A set of x-ray diffraction images collected at beam line 08ID of the Canadian Light Source.
DOI: 10.5281/zenodo.1146638
title: Diffraction images for PWWP1 domain of NSD2 in complex with MR837

description: A set of x-ray diffraction images collected at beam line 08ID of the Canadian Light Source.
DOI: 10.14469/hpc/3573
title: CMe3F(2-) NMR

description: Gaussian Calculation
DOI: 10.14469/hpc/3574
title: TMS wB97XD/Def2-TZVPPD Water

description: Gaussian Calculation
DOI: 10.14469/hpc/3577
title: 1',3'-di-tert-butyl-1,3,4,4-tetrakis(2,4,6-triisopropylphenyl)spiro[bicyclo[1.1.0]tetrasilane-2,2'-[1,3,2]diazasilolidine, with GD3BJ dispersion, singlet -4003.441420, no symmetry imposed, compound 3a.

description: Gaussian Calculation
DOI: 10.15468/irw9fv
title: Checklist of bats housed at the Natural History Museum of Zimbabwe

description: The checklist provides a partial list of the number of bat species that are found in the Mammalogy wet collection. The specimens are preserved in 70% alcohol and the alcohol is frequently topped up. The species were collected from 13 different countries in Africa i.e. Angola, Botswana, DR Congo, Ethiopia, Gabon, Ghana, Ivory Coast, Malawi, Mozambique, Namibia, South Africa, Zambia, Zimbabwe. The species were collected from 1899-2012.
DOI: 10.5281/zenodo.1146827
title: Phoneme Based Embedded Segmental K-Means for ZeroSpeech2017 Track 2

description: Our submission applying the phoneme based embedded segmental k-means model to the ZeroSpeech2017 challenge track 2. This is a preliminary version. More details can be found here: https://www.kamperh.com/papers/bhati+kamper+murty_icassp2018.pdf and https://github.com/Saurabhbhati/recipe_zs2017_track2
DOI: 10.5281/zenodo.1146828
title: Phoneme Based Embedded Segmental K-Means for ZeroSpeech2017 Track 2

description: Our submission applying the phoneme based embedded segmental k-means model to the ZeroSpeech2017 challenge track 2. This is a preliminary version. More details can be found here: https://www.kamperh.com/papers/bhati+kamper+murty_icassp2018.pdf and https://github.com/Saurabhbhati/recipe_zs2017_track2
DOI: 10.5281/zenodo.1147619
title: SMART(SiMulAtion and ReconsTruction) PET: An efficient PET simulation-reconstruction tool

description: In this repository you can find the matlab scripts I used to make the data analysis of the paper SMART(SiMulAtion and ReconsTruction) PET: An efficient PET simulation-reconstruction tool. Furthermore, you can find the simulated, as well as the scanned data sets of the NEMA-IQ. Moreover, you can find the EARL analysis tool (iqq_optim_....sav), the simulation tool (reconsimulation_....sav) and the program to modifiy the Digital Reference Object (DRO) (IQ_DRO_Modifier.sav). The best is, to download the .zip file SMART.zip which contains an executable of the IQ_DRO_Modifier and SMART PET. For any questions, please contact: e.a.g.pfaehler@umcg.nl or r.boellaard@umcg.nl
DOI: 10.5281/zenodo.1149683
title: Mandhal, Maharashtra, India. Surface pottery collections in INHCRF Nasik

description: Mandhal, Maharashtra, India. Surface pottery collections in INHCRF Nasik.