cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1515944.v1
title: Survey of 3 prime GG gRNA sites in 8 genomes

description: gRNA sites with a 3' GG motif adjacent to the PAM site have been shown to exhibit substantially higher genome-editing efficiency in C. elegans. I scanned 6 model genomes (Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Danio rerio, Mus musculus, and Homo sapiens) and two non-model genomes (Sus scrofa and Loxodonta africana) for these motifs using Ensembl Release 79 reference genomes. This dataset compiles for each species the gRNA sites observed, number of observations, location, and genes overlapping, as well as for each gene a tabulation of how many times a given gRNA class overlaps it.
DOI: 10.6084/m9.figshare.23987925.v1
title: Supplement D: Complete dataset

description: Complete dataset for R analysis, including coded data, for article "The Grading Process in System 1 and System 2 of Thinking: A Behavioral Economic Approach to Evaluation"
DOI: 10.6084/m9.figshare.24758082.v2
title: Code examples for slimr manuscript, along with all data needed to run them.

description: This is all of the code and required data to run all example found in the manuscript describing the R package slimr. slimr is an R package designed to smoothly link the statistical and data processing power of R with the standalone population genomics simulation software SLiM.
DOI: 10.6084/m9.figshare.24866709.v1
title: Dataset for 'Neuroanatomical correlates of musicianship in left-handers'

description: Dataset supporting the findings described in the research article titled: 'Neuroanatomical correlates of musicianship in left-handers'
DOI: 10.6084/m9.figshare.27623457.v1
title: Dataset of ASE 2024 research paper "How Does Code Optimization Impact Third-party Library Detection for Android Applications?"

description: <pre># Evaluation Dataset<br><br>This is the dataset for ASE 2024 paper "How Does Code Optimization Impact Third-party Library Detection for Android Applications?". If you are interested in our work, you are welcome to cite our paper.<br><br><br><br>## Folder Structure<br>  <br>- **apks_5_compilation_configuration**: 200 Apps with 5 compilation configurations: (1) D8 alone, (2) Obfuscation, (3) Shrinking, (4) Optimization+ Shrinking, and <br>(5) Obfuscation + Optimization + Shrinking (R8’s default strategy).<br>- **apk_13_different_optimization_strategies**: Randomly selected 50 Apps with different 13 optimization strategies, individually optimized by R8.  Also enabling Shrinking during compilation.<br>- **dexs**: Contains the library dex files used as candidate library. These dex files are produced by the D8 compiler.<br>- **groundtruth**: Groundtruth for library detection.<br>- **params_tuning_apks**: APKs selected for the param tuning experiment.  <br>- **mapping_files_for_dataset1**: Includes seed files, mapping files, and usage files generated during APK production. These files are useful for debugging.<br>- **mapping_files_for_dataset2**: Includes seed files, mapping files, and usage files generated during APK production. These files are useful for debugging.<br><br><br>## Citation<br>```<br>@inproceedings{10.1145/3691620.3695554,<br>author = {Xie, Zifan and Wen, Ming and Li, Tinghan and Zhu, Yiding and Hou, Qinsheng and Jin, Hai},<br>title = {How Does Code Optimization Impact Third-party Library Detection for Android Applications?},<br>year = {2024},<br>isbn = {9798400712487},<br>publisher = {Association for Computing Machinery},<br>address = {New York, NY, USA},<br>url = {https://doi.org/10.1145/3691620.3695554},<br>doi = {10.1145/3691620.3695554},<br>booktitle = {Proceedings of the 39th IEEE/ACM International Conference on Automated Software Engineering},<br>pages = {1919–1931},<br>numpages = {13},<br>keywords = {code optimization, third-party library, android},<br>location = {Sacramento, CA, USA},<br>series = {ASE '24}<br>}<br>```<br></pre>
DOI: 10.6084/m9.figshare.28689119.v1
title: Spike-sorted electrophysiological data for WT and Fmr1 KO mice

description: Electrophysiological data extracted from Kilosort 2.5 and manually curated with Phy
DOI: 10.6084/m9.figshare.8115677.v1
title: LITData_CoralBenthicSurvey_LizardIsland_1995to2017

description: Coral reef benthic community line intercept transect data from Lizard Island, Australia.<br><br>Method: Line intercept transect<br>Years: 1995 - 2017Sites: 21Taxa: Scleractinian corals to species, other benthic taxa at lower taxonomic resolution.<br>Field data were collected at Lizard Island, Australia and consisted of line intercept transect (LIT) surveys of the benthic community focussing on scleractinian coral colonies, where a colony was defined as a contiguous live surface of coral. Data were collected over eight campaigns across 21 sites and a timespan of 22 years, recording 2960 colonies from 181 species representing a broad spatial, temporal and taxonomic sample (Madin et al., 2018) Two cyclones in 2014 and 2015, and the 2016 mass bleaching event occurred during the data collection period.
DOI: 10.6084/m9.figshare.9956420.v1
title: bacterial GWAS benchmark simulations: Sample size 400

description: Supplementary data for the paper "Benchmarking bacterial genome-wide association study (GWAS) methods using simulated genomes and phenotypes":<br>https://www.biorxiv.org/content/10.1101/795492v1<br>
DOI: 10.17632/86wk97tcvp
title: Dataset for "Image similarity-based cardiac rhythm device identification from X-rays using feature point matching"

description: The minimal dataset to reproduce the results presented in our article entitled "Image similarity-based cardiac rhythm device identification from X-rays using feature point matching", including the main source code of our web application to identify CIEDs from X-ray available at https://ahigaki.pythonanywhere.com.
DOI: 10.6084/m9.figshare.13653251.v1
title: Source Data 1

description: <b>Source Data 1. </b>Information of the 423 cell lines in which both CRIPSR and shRNA screening were tested.
DOI: 10.6084/m9.figshare.19709929.v1
title: Antimicrobial resistance surveillance report, Amnatcharoen Hospital, Amnatcharoen, Thailand, 01 Jan 2021 to 31 Dec 2021

description: The AMASSplus application is an extension of AMASS Version 1.1 that was released on 12 January 2021. AMASSplus has an additional report (page 38-40) on selected notifiable bacterial diseases. For implementation of AMASSplus at your hospitals in Thailand.The application can be downloaded from https://www.amass.website This is a repository of the files for Amnatcharoen Hospital.The attached three files are: 1) The AMR surveillance report automatically generated from AMASSplus using only microbiology data of Amnatcharoen Hospital in Thailand 2) Aggregated summary data in .csv format automatically generated from AMASSplus 3) Data dictionary for microbiology data file of Amnatcharoen Hospital (configured by the hospital to be used with the AMASSplus application) Please note that the data dictionary files can be re-used with the data files of the hospital in the future in cases when variables names and values in the raw data remained unchanged.
DOI: 10.6084/m9.figshare.25027646.v1
title: quantum-confined-stark-effect-in-quantum-dots-data

description: This repository contains the data associated with the research paper [1].[1] Joe Mahoney, Mingchu Tang, Huiyun Liu, and Nicolás Abadía, "Measurement of the quantum-confined Stark effect in InAs/In(Ga)As quantum dots with p-doped quantum dot barriers," Opt. Express 30, 17730-17738 (2022). DOI: 10.1364/OE.455491.
DOI: 10.6084/m9.figshare.7775777.v1
title: H460-RUNX3.xlsx

description: To identify genes regulated by RUNX3, we performed mRNA sequencing (RNA-seq) in H460-ERT2-RUNX3 and H460-ERT2-RUNX3-K94/171R cells. H460-vec, H460-ERT2-RUNX3, and H460-ERT2-RUNX3-K94/171R cells were serum-starved for 24 hr, and then stimulated with 10% serum or 10% serum + 1mM 4-OHT for 0, 8, or 16 hr. RNA was extracted from the cells, and gene expression patterns were analyzed by mRNA sequencing. Expression of genes 8 or 16 hr after serum stimulation was quantified as log<sub>2</sub>(fold change) relative to the average of control reactions (i.e., before serum stimulation, 0 hr) for each cell line.
DOI: 10.17632/xssdssg7z4
title: Upper Air Meteorological Data for Uyo

description: A total of 2069 meteorological observations for temperature, pressure, and dew point, with corresponding time, and elevation of capture, were recorded, using Radiosonde equipped with a payload that measures upper air temperature, pressure, and the dew point. The meteorological data logged spans between January 2021 and July 2021
DOI: 10.6084/m9.figshare.24187104.v1
title: C.elegans neurons connectomic information

description: Dataset giving connectomics information about each neuron in C.elegans from the paper The Neuropeptide Connectome of C.elegans. The anatomical regions in which the neuron is included , the neuropeptidergic and synaptic connections, etc.
DOI: 10.6084/m9.figshare.28989440.v3
title: AL4AnimalS Poster

description: AL4AnimalS 2025 poster from Endika Varela Martínez
DOI: 10.6084/m9.figshare.c.2185342_d7.v2
title: Electron tomography series of platinum nanoparticle at atomic resolution

description: Tomographic series of a single platinum nanoparticle acquired using the equally sloped tomography technique.
DOI: 10.6084/m9.figshare.12579152.v3
title: Potentilla_anserina.gff3

description: Genes structure annotation file
DOI: 10.6084/m9.figshare.21972521.v2
title: Data and code for "Historical impacts of grazing on carbon stocks and climate mitigation opportunities"

description: Owing to space constraints, several soil and vegetation variables were not uploaded in the previous file <i>soilC data.xlsx</i>, and in this file, the 'use' column did not match the references. The current version includes all compiled data.
DOI: 10.6084/m9.figshare.29064236.v1
title: Results for four LLMS for the analysis of ROBIS and AMSTAR2 tools, in a sample of systematic reviews

description: The dataset shows the results for four LLMS (ChatGPT, Gemini, DeepSeek and QWEN) for the analysis of ROBIS and AMSTAR2 tools, in a sample of systematic reviews. This dataset is part of a manuscript "Forero DA; Abreu SE, Tovar BE Oermann MH. Automated Analyses of Risk of Bias and Critical Appraisal of Systematic Reviews (ROBIS and AMSTAR 2): A Comparison of the Performance of Four Large Language Models", submitted to the Journal of the American Medical Informatics Association
DOI: 10.17632/r4tj555pc7
title: Satellite Cell KO of NELF-B Transcriptomics - Dev Cell

description: SUPPLEMENTARY TABLES LIST : Table S1 - Differentially expressed genes from single-cell RNA-Seq studies focused on differentially enriched clusters 0, 2, 7, 8, 9 identified in PAGA analysis Table S2 - Gene Ontology analysis of differentially expressed genes from single-cell RNA-Seq studies focused on differentially enriched clusters 0, 2, 7, 8, 9 identified in PAGA analysis Table S3 – Differentially expressed genes from RNA-Seq studies of MuSC isolated from regenerating muscle 48h and 120h after CTX injury, and for cultured myoblasts. Table S4 – Gene Ontology analysis of differentially expressed genes from RNA-Seq studies of MuSC isolated from regenerating muscle 48h, 120h after CTX injury, and for cultured myoblasts.
DOI: 10.6084/m9.figshare.14865442.v1
title: Motion Data in C3D format from A review of musculoskeletal modelling of human locomotion

description: Experimental Motion Tracking and Force Plate Data
DOI: 10.6084/m9.figshare.20390703.v1
title: images-2022-07-28T07_32_10.zip

description: Dataset of images for library
DOI: 10.6084/m9.figshare.26089244.v1
title: HiGTS_2013s2

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2013s2 contains the data from April 1, 2013 to June 30, 2013.
DOI: 10.6084/m9.figshare.28420913.v1
title: <b>Co-targeting the adenosinergic axis enhances the anti-tumor efficacy of anti-PD-L1 immunotherapy in bladder cancer</b>

description: Database
DOI: 10.17632/v43hmbwxpm
title: Bearing Vibration Data under Time-varying Rotational Speed Conditions

description: The data contain vibration signals collected from bearings of different health conditions under time-varying rotational speed conditions. There are 60 datasets in total. For each dataset, there are two experimental settings: bearing health condition and varying speed condition. The health conditions of the bearing include (i) healthy, (ii) faulty with an inner race defect, (iii) faulty with an outer race defect, (iv) faulty with a ball defect, and (v) faulty with combined defects on the inner race, the outer race and a ball. The operating rotational speed conditions are (i) increasing speed, (ii) decreasing speed, (iii) increasing then decreasing speed, and (iv) decreasing then increasing speed. Therefore, there are 20 different cases for the setting. To ensure the authenticity of the data, 3 trials are collected for each experimental setting which results in 60 datasets in total. Each dataset contains two channels: 'Channel_1' is vibration data measured by the accelerometer and 'Channel_2' is the rotational speed data measured by the encoder. All these data are sampled at 200,000Hz and the sampling duration is 10 seconds. The CPR (Cycles Per Revolution) of the encoder is 1024.
DOI: 10.6084/m9.figshare.12543680.v1
title: JVASP-34289 to JVASP-35225

description: JARVIS-DFT input/output files
DOI: 10.6084/m9.figshare.22561711.v1
title: SWIR.rar

description: SWIR model for performing classification of copper concentrates based on their reflectance spectra. These model are intended to be used with the Dataset: F. rivas, et al, "VISNIR-SWIR reflectance dataset of copper concentrates," figshare (2023) https://opticapublishing.figshare.com/s/5567076d996015a5de89 The copper concentrate mixture used in the previous dataset have been characterized via QEMSCAN in: F. rivas, et al, "QEMSCAN REPORT OF 82 COPPER CONCENTRATES," figshare (2023) https://opticapublishing.figshare.com/s/52c54f5634ad9fe79878 Note：Matlab® is required to run the models.
DOI: 10.6084/m9.figshare.24516436.v1
title: CellChat object of mouse brain 10X Visium dataset

description: CellChat object after running cell-cell communication analysis of the mouse brain 10X Visium dataset using CellChat v2. We download this dataset from https://www.10xgenomics.com/resources/datasets/mouse-brain-serial-section-1-sagittal-anterior-1-standard-1-0-0. Biological annotations of spots (i.e., cell group information) are predicted using Seurat R package.
DOI: 10.6084/m9.figshare.28466177.v1
title: <b>Accumulated carbon storage during 2001-2020 in tidal marshes</b>

description: <b>DATASET: Accumulated carbon storage during 2001-2020 in tidal marshes</b><br><b>Resolution</b>: 1 Km;<b>Year</b>: 2001-2020;<b>Description</b>:tidal marsh_2001: Cabon stock of tidal marshes in 2001;tidal marsh_0120: Accumulated carbon storage of tidal marshes during 2001-2020;tidal marsh_0104: Carbon increment of tidal marshes during 2001-2004;tidal marsh_0407: Carbon increment of tidal marshes during 2004-2007;tidal marsh_0710: Carbon increment of tidal marshes during 2007-2010;tidal marsh_1013: Carbon increment of tidal marshes during 2010-2013;tidal marsh_1316: Carbon increment of tidal marshes during 2013-2016;tidal marsh_1620: Carbon increment of tidal marshes during 2016-2020.
DOI: 10.6084/m9.figshare.29118986.v1
title: Data and analysis files from "Flowing round the world: Water snakes (Natricidae) show habitat-driven adaptive radiation after colonization of the Americas"

description: Phylogenetic comparative analysis of Natricidae (water snakes) aimed towards understanding their evolutionary dynamics after colonising the Americas. Analyses include confirmation that natricids dispersed to the New World only once (historical biogeographic analysis with RASP), that this was associated with a burst of diversification (estimation of diversification rates and shifts with BAMM), and that the New World clade is characterised by accelerated rates of evolution of broad habitat categories but not body size or broad diet categories (estimated of rate shifts for body size with BAMM and for diet and habitat categories with phytools in R)
DOI: 10.17632/jnkjtfyfrf
title: Drivers of Innovation and Competitiveness in SMEs: A Comprehensive Analysis of the Latin American and Caribbean Region

description: This data was use to investigate the key drivers of innovation and competitiveness in small and medium-sized enterprises (SMEs) within the Latin American and Caribbean (LAC) region,
DOI: 10.6084/m9.figshare.19100609.v1
title: Seascape genomics of coastal bottlenose dolphins along strong gradients of temperature and salinity.

description: Tadu_8081SNP.strGenotypes for 131 Indo-Pacific bottlenose dolphin (<i>Tursiops aduncus</i>) individuals at 8081 biallelic SNP loci in structure format.Tadu_8081SNP.vcfVCF with genotypes for 131 Indo-Pacific bottlenose dolphin (<i>Tursiops aduncus</i>) individuals at 8081 biallelic SNP loci.Tadu_Env.zipFile with geographic coordinates and 24 environmental variables associated with each of the 131 Indo-Pacific bottlenose dolphin (<i>Tursiops aduncus</i>) samples. <br>
DOI: 10.6084/m9.figshare.22262455.v1
title: The three scales and responses

description: Responses to the three scales used in the study
DOI: 10.6084/m9.figshare.22534981.v1
title: Metadynamics enhanced training Datasets, DFT-SCAN accurate GAP Model and MD trajectories for "AL4GAP: Active Learning Workflow for generating DFT-SCAN Accurate Machine-Learning Potentials for Combinatorial Molten Salt Mixtures"

description: Metadynamics enhanced training Datasets, DFT-SCAN accurate GAP Model and MD trajectories for "AL4GAP: Active Learning Workflow for generating DFT-SCAN Accurate Machine-Learning Potentials for Combinatorial Molten Salt Mixtures" <br> <br>
DOI: 10.6084/m9.figshare.25502311.v1
title: <b>Development of artificial neural network based standalone graphical user interface application for prediction of hydraulic conductivity and compaction characteristics of lateritic soils.</b>

description: The suitability of laterite for engineering construction depends largely on its hydraulic conductivity and compaction characteristics; thus, determining these characteristics is highly important. However, the tests to determine these characteristics are costly and cumbersome. To overcome this limitation, this research developed ANN based standalone graphical user interface (GUI) application to enhance the prediction of lateritic soils’ hydraulic conductivity, maximum dry density and optimum moisture content, from indices: specific gravity, liquid limit, plasticity index, linear shrinkage and fine content. To achieve this goal, laboratory tests were conducted on three hundred lateritic soil samples and the experimental datasets obtained were divided into a model dataset comprising two hundred and forty data points, which were used to develop predictive models using artificial neural network (ANN), and a checking dataset with sixty data points, which were used to validate the application. The developed ANN models were transformed into mathematical equations, which were embedded in graphical user interface application to predict hydraulic conductivity and maximum dry density and optimum moisture content. The performance of the developed ANN based standalone GUI application was appraised and validated against prominent regression-based models in the literature using various prediction performance metrics; based on these metrics, the ANN based standalone GUI application outperformed the existing regression-based models by presenting lower RMSE, MAPE and MAE values and higher R<sup>2 </sup>values
DOI: 10.6084/m9.figshare.27794355.v2
title: depression among pregnant women

description: study about depression among pregnant women
DOI: 10.17632/jxbg69v778
title: Individual Differences in Visualization and Childhood Play Preferences

description: This data is from “Individual Differences in Visualization and Childhood Play Preferences” study.
DOI: 10.6084/m9.figshare.12547187.v1
title: Data and code to reproduce Evans et al. 2020 "Assessing temperature-dependent competition between two invasive mosquito species"

description: Data and code needed to reproduce analyses and figures from Evans et al. 2020 "Assessing temperature-dependent competition between two invasive mosquito species".<br><br>Code should be run with working directory set to top directory.<br>
DOI: 10.6084/m9.figshare.24050169.v1
title: Supplementary Material for: Clostridium difficile bacteremia as a rare presentation of polymicrobial pyogenic liver abscesses and its management challenges

description: Extracolonic manifestations of Clostridium difficile have been rarely reported. We herein report a case of a 60-year-old immunocompetent man presenting with fever, nausea, abdominal pain and loose stools for two weeks. Triple phase liver computed tomography demonstrated pyogenic liver abscesses and portal pylephlebitis. Blood cultures grew Clostridium difficile and Bacteroides fragilis and liver abscess cultures grew Proteus mirabilis, Escherichia coli, and the viridans group Streptococci. Antibiotics coverage was selected to direct at all identified organisms. This demonstrates an unusual case of Clostridium difficile bacteremia in a patient with polymicrobial pyogenic liver abscesses and pylephlebitis.
DOI: 10.6084/m9.figshare.3529160.v1
title: Supplement 1. Script with R code for statistical analysis.

description: File List ScriptMeynard&Quinn.R -- Annotated R code. Description This file contains code to replicate the statistical analysis performed in the paper, and comments that will help the reader understand the commands. The file can be opened within any text editor and copied into the R command line. It can also be opened from the R script environment. Testing of spatial autocorrelation on raw variables and residuals from regressions are demonstrated. The correlation matrix to perform the structural equation modeling (SEM) analysis is also provided, as well as code for different SEM analysis using this data. Required software: R statistical package, and additional libraries spdep and sem.