cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26208/vyma-q755
title: Supplementary tropical-cyclone count data-set for ‘Stratified statistical models of North Atlantic basin-wide and regional tropical cyclone counts’ (Journal of Geophysical Research, Kozar et al. 2012)

description: Using the historical Atlantic tropical cyclone record, this study examines the empirical relationships between climate state variables and Atlantic tropical cyclone counts. The state variables considered as predictors include indices of the El Niño/Southern Oscillation and Northern Atlantic Oscillation, and both “local” and “relative” measures of Main Development Region sea surface temperature. Other predictors considered include indices measuring the Atlantic Meridional Mode and the West African monsoon. Using all of the potential predictors in a forward stepwise Poisson regression, we examine the relationships between tropical cyclone counts and climate state variables. As a further extension on past studies, both basin-wide named storm counts and cluster analysis time series representing distinct flavors of tropical cyclones, are modeled. A wide variety of cross validation metrics reveal that basin-wide counts or sums over appropriately chosen clusters may be more skillfully modeled than the individual cluster series. Ultimately, the most skillful models typically share three predictors: indices for the main development region sea surface temperatures, the El Niño/Southern Oscillation, and the North Atlantic Oscillation.
DOI: 10.6084/m9.figshare.14495442
title: Body weight.xlsx

description: The change body weight of mice in each group
DOI: 10.6084/m9.figshare.14495448
title: Positive mode.xls

description: The metabolites of positive mode
DOI: 10.6084/m9.figshare.14495448.v1
title: Positive mode.xls

description: The metabolites of positive mode
DOI: 10.26208/b6tz-2708
title: Supplementary data, code, and other information for ‘Global Signatures and Dynamical Origins of the Little Ice Age and Medieval Climate Anomaly’ (Science, Mann et al. 2009)

description: Global temperatures are known to have varied over the past 1500 years, but the spatial patterns have remained poorly defined. We used a global climate proxy network to reconstruct surface temperature patterns over this interval. The Medieval period is found to display warmth that matches or exceeds that of the past decade in some regions, but which falls well below recent levels globally. This period is marked by a tendency for La Niña–like conditions in the tropical Pacific. The coldest temperatures of the Little Ice Age are observed over the interval 1400 to 1700 C.E., with greatest cooling over the extratropical Northern Hemisphere continents. The patterns of temperature change imply dynamical responses of climate to natural radiative forcing changes involving El Niño and the North Atlantic Oscillation–Arctic Oscillation.
DOI: 10.6084/m9.figshare.14495445
title: Negative mode.xls

description: The metabolites of negetive mode
DOI: 10.6084/m9.figshare.14495445.v1
title: Negative mode.xls

description: The metabolites of negetive mode
DOI: 10.6084/m9.figshare.14495439
title: ELISA(serum skin).xls

description: Elisa analysis of the serum and skin of mice.
DOI: 10.6084/m9.figshare.14495439.v1
title: ELISA(serum skin).xls

description: Elisa analysis of the serum and skin of mice.
DOI: 10.6084/m9.figshare.12271895
title: Exploring the effects of partitioned transition rules upon urban growth simulation in a megacity region: A comparative study of cellular automata-based models in the Greater Wuhan Area

description: Substantial studies have been conducted to simulate urban growth in the rapidly growing regions for planning and management. However, the difficulty remains in the establishment of urban growth models designed for megacity regions, particularly due to spatial differentiations in the distribution and driving forces of urban dynamics among sub-regions. In addition, limited studies have examined the effects of partitioned transition rules upon urban simulation for different classes of models. The current research integrated the two components of partitioned transition rules, namely, partitioned development probability (PDP) and partitioned transition thresholds (PTTs) into the basic framework of cellular automata (CA). Three types of approaches, including spatial, non-spatial, and intelligent algorithms were adopted to calibrate the transition rules, respectively. The constructed urban CA models were applied to simulate rapid urban development in the Greater Wuhan Area from 2005 to 2015. The results indicate that the combination of PDP and PTTs can significantly improve the overall performance of urban CA models through the effects on static development probability (SDP) and evolving rates. In particular, the SDP and actual development of available cells to be converted become closer after adopting PDP, but the situation is opposite for the rate of urbanized cells. Furthermore, PDP may not be applicable for the spatially heterogeneous CA models, whereas PTTs can help control the growth rates in sub-regions, which, however, may not yield better results when SDP is of low levels of accuracy. Besides, the effects of PDP and PTTs on urban simulation accuracies vary in sub-regions with different expansion patterns and rates.<br>
DOI: 10.6084/m9.figshare.12271895.v1
title: Exploring the effects of partitioned transition rules upon urban growth simulation in a megacity region: A comparative study of cellular automata-based models in the Greater Wuhan Area

description: Substantial studies have been conducted to simulate urban growth in the rapidly growing regions for planning and management. However, the difficulty remains in the establishment of urban growth models designed for megacity regions, particularly due to spatial differentiations in the distribution and driving forces of urban dynamics among sub-regions. In addition, limited studies have examined the effects of partitioned transition rules upon urban simulation for different classes of models. The current research integrated the two components of partitioned transition rules, namely, partitioned development probability (PDP) and partitioned transition thresholds (PTTs) into the basic framework of cellular automata (CA). Three types of approaches, including spatial, non-spatial, and intelligent algorithms were adopted to calibrate the transition rules, respectively. The constructed urban CA models were applied to simulate rapid urban development in the Greater Wuhan Area from 2005 to 2015. The results indicate that the combination of PDP and PTTs can significantly improve the overall performance of urban CA models through the effects on static development probability (SDP) and evolving rates. In particular, the SDP and actual development of available cells to be converted become closer after adopting PDP, but the situation is opposite for the rate of urbanized cells. Furthermore, PDP may not be applicable for the spatially heterogeneous CA models, whereas PTTs can help control the growth rates in sub-regions, which, however, may not yield better results when SDP is of low levels of accuracy. Besides, the effects of PDP and PTTs on urban simulation accuracies vary in sub-regions with different expansion patterns and rates.<br>
DOI: 10.15468/x5x6pm
title: Revision of the Rhagovelia angustipes complex (Insecta: Hemiptera: Veliidae from Colombia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Galindo-Malagón, Ximena Alejandra, Morales, Irina, Moreira, Felipe Ferraz Figueiredo (2021): Revision of the Rhagovelia angustipes complex (Insecta: Hemiptera: Veliidae from Colombia. Zootaxa 4958 (1): 167-225, DOI: https://doi.org/10.11646/zootaxa.4958.1.11
DOI: 10.5281/zenodo.4723409
title: Global Plant Phenotyping Survey 2020/21

description: For the past six years, IPPN and EMPHASIS have carried out their bi-annual "Plant Phenotyping Surveys". They cover basic and advanced questions related to plant phenotyping for the purpose of assessing the status of global plant phenotyping and emerging fields. The surveys address participants from <strong>all geographic regions and in all professional disciplines in any way related to plant phenotyping</strong>.<br> <br> The survey data provide the primary source of information for our plant phenotyping knowledge base, informing us about the topics and issues inherent to the international and regional (sub-)communities, in academia and industry. This also helps us to identify potential gaps and understand the demands of the community in terms of required services and tools.
DOI: 10.5281/zenodo.4723408
title: Global Plant Phenotyping Survey 2020/21

description: For the past six years, IPPN and EMPHASIS have carried out their bi-annual "Plant Phenotyping Surveys". They cover basic and advanced questions related to plant phenotyping for the purpose of assessing the status of global plant phenotyping and emerging fields. The surveys address participants from <strong>all geographic regions and in all professional disciplines in any way related to plant phenotyping</strong>.<br> <br> The survey data provide the primary source of information for our plant phenotyping knowledge base, informing us about the topics and issues inherent to the international and regional (sub-)communities, in academia and industry. This also helps us to identify potential gaps and understand the demands of the community in terms of required services and tools.
DOI: 10.6084/m9.figshare.13414697.v1
title: Supplementary data_He etal.zip

description: Two sets of paleotopographic and paleobathymetric boundary conditions for the middle Miocene and late Miocene
DOI: 10.26208/1893-df25
title: Supplementary data, code, validation statistics, and other information for ‘Proxy-based reconstructions of hemispheric and global surface temperature variations over the past two millennia’ (PNAS, Mann et al. 2008)

description: Following the suggestions of a recent National Research Council report [NRC (National Research Council) (2006) Surface Temperature Reconstructions for the Last 2,000 Years (Natl Acad Press, Washington, DC).], we reconstruct surface temperature at hemispheric and global scale for much of the last 2,000 years using a greatly expanded set of proxy data for decadal-to-centennial climate changes, recently updated instrumental data, and complementary methods that have been thoroughly tested and validated with model simulation experiments. Our results extend previous conclusions that recent Northern Hemisphere surface temperature increases are likely anomalous in a long-term context. Recent warmth appears anomalous for at least the past 1,300 years whether or not tree-ring data are used. If tree-ring data are used, the conclusion can be extended to at least the past 1,700 years, but with additional strong caveats. The reconstructed amplitude of change over past centuries is greater than hitherto reported, with somewhat greater Medieval warmth in the Northern Hemisphere, albeit still not reaching recent levels.
DOI: 10.25502/y582-eg68/d
title: Physicochemical alterations of plantain chips as affected by ripening stage and precursors

description: This project is aimed to sustainably enhance the adoption, productivity and utilization of endophyte primed high pro-vitamin A plantain cultivars and hybrids in the context of ISFM in smallholder farms in Nigeria, Cameroon and Gabon.
DOI: 10.26208/1z9d-sn22
title: Supplementary data, code, and information for ‘Underestimation of volcanic cooling in tree-ringbased reconstructions of hemispheric temperatures’ (Nature Geoscience, Mann et al. 2012)

description: The largest eruption of a tropical volcano during the past millennium occurred in AD 1258–1259. Its estimated radiative forcing was several times larger than the 1991 Pinatubo eruption1 . Radiative forcing of that magnitude is expected to result in a climate cooling of about 2 ?C. This effect, however, is largely absent from tree-ring reconstructions of temperature, and is muted in reconstructions that employ a mix of tree-rings and other proxy data. This discrepancy has called into question the climate impact of the eruption. Here we use a tree-growth model driven by simulated temperature variations to show that the discrepancy between expected and reconstructed temperatures is probably an artefact caused by a reduced sensitivity to cooling in trees that grow near the treeline. This effect is compounded by the secondary effects of chronological errors due to missing growth rings and volcanically induced alterations of diffuse light. We support this conclusion with an assessment of synthetic proxy records created using the simulated temperature variations. Our findings suggest that the evidence from tree rings is consistent with a substantial climate impact of volcanic eruptions in past centuries that is greater than that estimated by tree-ring-based temperature reconstructions.
DOI: 10.25345/c5450g
title: MassIVE MSV000087310 - Enterically derived high density lipoprotein restrains liver injury via the portal vein
title: The proteomes of HDL subspecies, HDL2 and HDL3, from pooled human serum purified by density gradient centrifugation were generated and compared to the proteomes of HDL2 and HDL3 derived from tportal venouhe s and antecubital venous blood matched across these two locations from the same individual. The latter were purified by size exclusion chromatography coupled with immunoprecipitation with anti-apoA1 mAb.
DOI: 10.5281/zenodo.4723339
title: Biogeochemical feedbacks associated with the response of micronutrient recycling by zooplankton to climate change

description: NEW_regions_ORCA2.nc : contains the region delimitations IACC_FixedFQ.nc contains the time series for carbon and iron recycling in the PICONTROL with fixed food quality IAC_FixedFQ.nc contains the time series for carbon and iron recycling in the climate change run with fixed food quality IACC_diad_averages.nc contains the 10 year averages of all flux diagnostics for the PRESENT and FUTURE periods from the PICONTROL IACC_ptrc_averages.nc contains the 10 year averages of all tracer concentrations for the PRESENT and FUTURE periods from the PICONTROL IAC_diad_averages.nc contains the 10 year averages of all flux diagnostics for the PRESENT and FUTURE periods from the Climate change simulation IAC_ptrc_averages.nc contains the 10 year averages of all tracer concentrations for the PRESENT and FUTURE periods from the climate change simulation *votemper* files contain sea temperature data for the corresponding period in IAC (climate change simulation) and IACC (PICONTROL). These modelling results are used in Richon and Taglibue 2021, GCB manuscript: "Biogeochemical feedbacks associated with the response of micronutrient recycling by zooplankton to climate change"
DOI: 10.5281/zenodo.4723338
title: Biogeochemical feedbacks associated with the response of micronutrient recycling by zooplankton to climate change

description: NEW_regions_ORCA2.nc : contains the region delimitations IACC_FixedFQ.nc contains the time series for carbon and iron recycling in the PICONTROL with fixed food quality IAC_FixedFQ.nc contains the time series for carbon and iron recycling in the climate change run with fixed food quality IACC_diad_averages.nc contains the 10 year averages of all flux diagnostics for the PRESENT and FUTURE periods from the PICONTROL IACC_ptrc_averages.nc contains the 10 year averages of all tracer concentrations for the PRESENT and FUTURE periods from the PICONTROL IAC_diad_averages.nc contains the 10 year averages of all flux diagnostics for the PRESENT and FUTURE periods from the Climate change simulation IAC_ptrc_averages.nc contains the 10 year averages of all tracer concentrations for the PRESENT and FUTURE periods from the climate change simulation *votemper* files contain sea temperature data for the corresponding period in IAC (climate change simulation) and IACC (PICONTROL). These modelling results are used in Richon and Taglibue 2021, GCB manuscript: "Biogeochemical feedbacks associated with the response of micronutrient recycling by zooplankton to climate change"
DOI: 10.26208/dwhc-pp57
title: Supplementary data, code, and information for ‘Discrepancies between the modeled and proxy-reconstructed response to volcanic forcing over the past millennium: Implications and possible mechanisms(Journal of Geophysical Research, Mann et al. 2013)

description: We show that a systematic discrepancy between model simulations and proxy reconstructions of hemispheric temperature changes over the past millennium appears to arise from a small number of radiatively large volcanic eruptions. Past work has shown that accounting for this mismatch alone appears to reconcile inconsistencies between the overall amplitude of simulated and proxy-reconstructed temperature changes. We provide empirical support for the previously posited hypothesis that this discrepancy may arise from threshold growth effects in tree line-proximal trees that limit their response to large volcanic cooling events. Such threshold responses could lead to an absence of growth rings (as many as six accumulated years over the past eight centuries) for some fraction of tree line-proximal trees, leading to a potential misalignment of volcanic cooling events in trees from climatically distinct regions, and a further attenuation and smearing of the volcanic cooling signal. Since the high-frequency component of nearly all proxy reconstructions of past hemispheric temperature change is derived from tree ring data, this bias would likely impact nearly all such reconstructions. We show here that the discrepancy may have led to an underestimation bias in past studies attempting to infer equilibrium climate sensitivity from proxy temperature reconstructions of the past millennium.
DOI: 10.6084/m9.figshare.14039267.v1
title: Juventae CTX DEM

description: CTX DEM of sedimentary fans in Juventae Chasma, Valles Marineris, Mars. See ReadMe and Index file for details.
DOI: 10.6084/m9.figshare.14039267
title: Juventae CTX DEM

description: CTX DEM of sedimentary fans in Juventae Chasma, Valles Marineris, Mars. See ReadMe and Index file for details.
DOI: 10.6084/m9.figshare.14495559.v1
title: The combination of ADSCs and 10% PRP increase Rb protein expression on senescent human dermal fibroblasts .xlsx

description: This study was performed in vitro with a randomization sample, non-blinded pre-and post-test control group. The primary culture of senescent HDFs was transfected with a combination of ADSCs and 10% PRP. The effect on migration was observed through the scratch test, while the effect of PRP on reversal senescence was observed through Sa-β-gal analysis and the expression of protein Rb with ELISA.The data obtained were analyzed using SPSS statistical software version 25. The normality test was carried out by the Shapiro Wilk test. If the <i>P</i> value &gt; 0,05, then the normality assumption is fulfilled so that an independent t-test is carried out. However, if the normality test is not fulfilled, the Mann-Whitney test is performed.
DOI: 10.6084/m9.figshare.14039270
title: CTX DEM Index

description: Index file describing the CTX DEMs.
DOI: 10.26208/42ym-4q50
title: Supplementary data, code, and information for ‘On forced temperature changes, internal variability, and the AMO’ (Geophysical Research Letters, Mann et al. 2014) 

description: We estimate the low-frequency internal variability of Northern Hemisphere (NH) mean temperature using observed temperature variations, which include both forced and internal variability components, and several alternative model simulations of the (natural + anthropogenic) forced component alone. We then generate an ensemble of alternative historical temperature histories based on the statistics of the estimated internal variability. Using this ensemble, we show, first, that recent NH mean temperatures fall within the range of expected multidecadal variability. Using the synthetic temperature histories, we also show that certain procedures used in past studies to estimate internal variability, and in particular, an internal multidecadal oscillation termed the “Atlantic Multidecadal Oscillation” or “AMO”, fail to isolate the true internal variability when it is a priori known. Such procedures yield an AMO signal with an inflated amplitude and biased phase, attributing some of the recent NH mean temperature rise to the AMO. The true AMO signal, instead, appears likely to have been in a cooling phase in recent decades, offsetting some of the anthropogenic warming. Claims of multidecadal “stadium wave” patterns of variation across multiple climate indices are also shown to likely be an artifact of this flawed procedure for isolating putative climate oscillations.
DOI: 10.5281/zenodo.4723552
title: minimal dataset for analysis

description: basic data related to the study on social health and resilience of community-dwelling older adults
DOI: 10.5281/zenodo.4723551
title: minimal dataset for analysis

description: basic data related to the study on social health and resilience of community-dwelling older adults
DOI: 10.21223/fp47jo
title: Dataset for: Agricultural Resilience through roots and tubers in typhoon prone regions in Philippines

description: Root and tuber crops (RTC) play an important role in diverse Asian agri-food systems and contribute to the household resilience which is the capacity to recover from shocks and stressors, including the ones related to climate change and increasingly frequent extreme whether events like typhoons. The dataset was collected with the objective to perform a quantitative assessment of the contribution of RTCs for enhanced resilience and disaster recovery after typhoons. Data collection was implemented after the super typhoon Ompong hit the Philippines in September 2018. The information collected was divided in seven sections: (0) Location information and consent, (B) Household roster: socio-demograpghic characteristics, (C) Household characteristics and economic activity, (D) Farm characteristics, (E) Typhoon characteristics, (F) Typhoon response: inmediate resilience strategies, and (G) Typhoon response: General strategies.
DOI: 10.26208/cb8n-k125
title: Supplementary data, code, and information for ‘Atlantic and Pacific multidecadal oscillations and Northern Hemisphere temperatures’ (Science, Steinman et al. 2015)

description: The recent slowdown in global warming has brought into question the reliability of climate model projections of future temperature change and has led to a vigorous debate over whether this slowdown is the result of naturally occurring, internal variability or forcing external to Earth’s climate system. To address these issues, we applied a semi-empirical approach that combines climate observations and model simulations to estimate Atlantic- and Pacific-based internal multidecadal variability (termed “AMO” and “PMO,” respectively). Using this method, the AMO and PMO are found to explain a large proportion of internal variability in Northern Hemisphere mean temperatures. Competition between a modest positive peak in the AMO and a substantially negative-trending PMO are seen to produce a slowdown or “false pause” in warming of the past decade.
DOI: 10.5281/zenodo.4723550
title: Underlying and extended data for: Increase of SARS-CoV-2 RNA load in faecal samples prompts for rethinking of SARS-CoV-2 biology and COVID-19 epidemiology.

description: Underlying and extended data for: Increase of SARS-CoV-2 RNA load in faecal samples prompts for rethinking of SARS-CoV-2 biology and COVID-19 epidemiology. The dataset consists of two ZIP compressed files: <strong>UnderlyingData.zip</strong> - Mass spectrometry file (one file in MGF format). <strong>ExtendedData.zip</strong> - Supplementary material files (two files in PDF format).
description: DECLARATION The scientific output expressed does not imply a policy position of the European Commission. Neither the European Commission nor any person acting on behalf of the Commission is responsible for the use that might be made of this publication.