cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3609866_d4.v1
title: Additional file 3: Table S2. of Recombination events among virulence genes in malaria parasites are associated with G-quadruplex-forming DNA motifs

description: Recombination breakpoints occurring in P. falciparum 3D7 and Dd2 strains during long-term culture. Experimentally determined breakpoints were collated from Bopp et al. and Claessens et al. [11, 12]. For each breakpoint the following is listed: genomic location in the 3D7 v3 genome assembly (chromosome number and breakpoint start and end co-ordinates on that chromosome), the length of the breakpoint if not mapped to single-base-pair resolution, the type of breakpoint (translocation or indel), whether the recombination event that breakpoint was involved in is var-associated, whether the recombination event that breakpoint was involved in is subtelomeric, which publication the breakpoint data was taken from and which recombination event that breakpoint belongs to. (XLSX 21 kb)
DOI: 10.15468/dl.656fnt
title: Occurrence Download

description: A dataset containing 1908 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primula scotica Hook."
 ]
}

 The dataset includes 1908 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037542-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3609911_d2.v1
title: Additional file 4: of Expression of epigenetic machinery genes is sensitive to maternal obesity and weight loss in relation to fetal growth in mice

description: Expression level and adjusted P values of 92 genes in the fetal liver, placental labyrinth, and junctional zone. We assessed the expression level of 60 epigenetic machinery genes and 32 genes implicated in metabolism or development in CTRL, OB, and WL females at E18.5 using TaqMan low-density arrays. Data are represented as mean expression levels ± St.Dev. *—differentially expressed genes. NA—non-amplified. Significant differences (P adj
DOI: 10.6084/m9.figshare.c.3609923_d1.v1
title: MOESM2 of On the design of a DEA-based device to pot
entially assist lower leg disorders: an analytical and FEM investigation accounting for nonlinearities of the leg and device deformations

description: Additional file 2. Total pressure values in kPa from the simulations for different stretch ratios and different calf regions.
DOI: 10.6084/m9.figshare.c.3609929_d1.v1
title: Additional file 2: of Molecular evolution of candidate male reproductive genes in the brown algal model Ectocarpus

description: Primers used for polymerase chain reaction. (XLS 8Â kb)
DOI: 10.6084/m9.figshare.c.3609911_d3.v1
title: Additional file 2: of Expression of epigenetic machinery genes is sensitive to maternal obesity and weight loss in relation to fetal growth in mice

description: List of the gene symbol and name, and the design strand and TaqMan® Gene Expression Assay IDentification reference for the 96 genes studied on the Custom TLDA.
DOI: 10.6084/m9.figshare.c.3609923_d2.v1
title: MOESM1 of On the design of a DEA-based device to pot
entially assist lower leg disorders: an analytical and FEM investigation accounting for nonlinearities of the leg and device deformations

description: Additional file 1. Final calf volume values in liter after wrapping and actuating the ACB.
DOI: 10.6084/m9.figshare.c.3609947_d4.v1
title: Additional file 5: Table S4. of Transcriptome analysis of complex I-deficient patients reveals distinct expression programs for subunits and assembly factors of the oxidative phosphorylation system

description: DAVID gene functional classification results of the top five percent complex I co-expressing genes. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3609968_d2.v1
title: Additional file 3: of Increased expression of dedicator-cytokinesis-10, caspase-2 and Synaptotagmin-like 2 is associated with clinical disease activity in multiple sclerosis

description: results 45 DEG from DNA arrays. (XLS 53Â kb)
DOI: 10.6084/m9.figshare.c.3609947_d5.v1
title: Additional file 1: Table S1. of Transcriptome analysis of complex I-deficient patients reveals distinct expression programs for subunits and assembly factors of the oxidative phosphorylation system

description: Overview of the structural subunits and assembly factors of OXPHOS complexes as used in this study. (XLSX 67 kb)
DOI: 10.6084/m9.figshare.c.3609962_d3.v1
title: Additional file 3: of Genome-wide copy number variation (CNV) detection in Nelore cattle reveals highly frequent variants in genome regions harboring QTLs affecting production traits

description: Descriptive statistics of CNVRs per individual bovine chromosome. (XLSX 5510 kb)
DOI: 10.6084/m9.figshare.c.3609968_d3.v1
title: Additional file 1: of Increased expression of dedicator-cytokinesis-10, caspase-2 and Synaptotagmin-like 2 is associated with clinical disease activity in multiple sclerosis

description: Probe sets 45 DEG. (XLS 35Â kb)
DOI: 10.6084/m9.figshare.c.3609947_d6.v1
title: Additional file 6: Table S5. of Transcriptome analysis of complex I-deficient patients reveals distinct expression programs for subunits and assembly factors of the oxidative phosphorylation system

description: TF binding site enrichment analysis of promoter regions of the top five percent complex I co-expressing genes (full results). (XLSX 65 kb)
DOI: 10.6084/m9.figshare.c.3609962_d4.v1
title: Additional file 8: of Genome-wide copy number variation (CNV) detection in Nelore cattle reveals highly frequent variants in genome regions harboring QTLs affecting production traits

description: Overlap of all CNVs identified in Nelore cattle with CNVRs currently listed at DVGarcheive database. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.c.3609971_d3.v1
title: Additional file 2: of Genomic profiling of fungal cell wall-interfering compounds: identification of a common gene signature

description: Saccharomyces cerevisiae mutant strains hypersensitive to Congo red, caspofungin and zymolyase classified by functional groups. (XLS 121 kb)
DOI: 10.6084/m9.figshare.c.3609962_d5.v1
title: Additional file 11: of Genome-wide copy number variation (CNV) detection in Nelore cattle reveals highly frequent variants in genome regions harboring QTLs affecting production traits

description: Gene Ontology annotation in CNVRs detected in Nelore HD SNP genotyping data. (XLSX 313 kb)
DOI: 10.6084/m9.figshare.c.3609962_d6.v1
title: Additional file 2: of Genome-wide copy number variation (CNV) detection in Nelore cattle reveals highly frequent variants in genome regions harboring QTLs affecting production traits

description: CNVRs detected in Nelore HD SNP genotyping data. (XLSX 1160 kb)
DOI: 10.6084/m9.figshare.c.3610013_d4.v1
title: Additional file 2: Table S2. of Similar striatal gene expression profiles in the striatum of the YAC128 and HdhQ150 mouse models of Huntingtonâ  s disease are not reflected in mutant Huntingtin inclusion prevalence

description: Over-representation analysis of the gene expression differences with age in YAC128 and WT striata (XLS 116 kb)
DOI: 10.6084/m9.figshare.c.3610025_d3.v1
title: Additional file 5: Table S4. of The structure and diversity of human, animal and environmental resistomes

description: Metadata for samples collected from MG-RAST repository. (XLSX 55Â kb)
DOI: 10.6084/m9.figshare.c.3610013_d5.v1
title: Additional file 5: Table S4. of Similar striatal gene expression profiles in the striatum of the YAC128 and HdhQ150 mouse models of Huntingtonâ  s disease are not reflected in mutant Huntingtin inclusion prevalence

description: Over-representation analysis of the 2557 genes nominally significantly differentially expressed between YAC128 and WT striata (XLS 61 kb)
DOI: 10.6084/m9.figshare.c.3610025_d4.v1
title: Additional file 8: of The structure and diversity of human, animal and environmental resistomes

description: Source code for bioinformatics and statistical analysis. (TXT 21Â kb)
DOI: 10.6084/m9.figshare.c.3610046_d1.v1
title: Additional file 2: of Breastfeeding is associated with waist-to-height ratio in young adults

description: Table S1. Regression Model Covariates. Table S2. Behavioral Risk Score Variables. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3610043_d1.v1
title: Additional file 8: of Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana

description: Table S8. Proteomic and phosphoproteomic components of Cvi and Rsch which were not included in the cold-induced protein-protein interaction network analysis of Fig.Â 8. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3610025_d6.v1
title: Additional file 7: Table S6. of The structure and diversity of human, animal and environmental resistomes

description: Metadata for samples collected from pharmaceutically polluted environments. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3610043_d2.v1
title: Additional file 4: of Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana

description: Table S2. Loadings of the protein PCA shown in Fig.Â 2b of the main document. (XLS 241 kb)
DOI: 10.6084/m9.figshare.c.3610013_d7.v1
title: Additional file 7: Table S5. of Similar striatal gene expression profiles in the striatum of the YAC128 and HdhQ150 mouse models of Huntingtonâ  s disease are not reflected in mutant Huntingtin inclusion prevalence

description: The 869 probesets that are differentially expressed between YAC128 and HdhQ150 striata. (XLS 137 kb)
DOI: 10.6084/m9.figshare.c.3610043_d3.v1
title: Additional file 12: of Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana

description: Table S10. List of metabolic components, retentions indices and mass-to-charge ratios which were applied for absolute quantification of metabolites. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3610064_d5.v1
title: Additional file 5: of Anchoring genome sequence to chromosomes of the central bearded dragon (Pogona vitticeps) enables reconstruction of ancestral squamate macrochromosomes and identifies sequence content of the Z chromosome

description: Gene synteny between anole and dragon (XLSX 2485Â kb)
DOI: 10.6084/m9.figshare.c.3610082_d2.v1
title: Additional file 4: of High-throughput gene-expression quantification of grapevine defense responses in the field using microfluidic dynamic arrays

description: Relative expression data set of defense-related gene obtained in classical qPCR system (Stratagene) and in Biomark® system analyzed during this study. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3610061_d5.v1
title: Additional file 6: of New data from basal Australian songbird lineages show that complex structure of MHC class II Î˛ genes has early evolutionary origins within passerines

description: Avian taxa included in Bayesian phylogeny. GenBank accession numbers and family or order classification are given for species included in the Bayesian phylogeny of avian taxa (Fig.Â 2). (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3610043_d9.v1
title: Additional file 10: of Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana

description: Table S7. Components of the acclimation-induced protein-protein interaction network of Cvi shown in Fig.Â 8c of the main document. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.c.3610064_d6.v1
title: Additional file 6: of Anchoring genome sequence to chromosomes of the central bearded dragon (Pogona vitticeps) enables reconstruction of ancestral squamate macrochromosomes and identifies sequence content of the Z chromosome

description: Script A1 to scan the synteny files to interim super-scaffolds for P. vitticeps. (CGI 22Â kb)
DOI: 10.6084/m9.figshare.c.3610082_d3.v1
title: Additional file 2: of High-throughput gene-expression quantification of grapevine defense responses in the field using microfluidic dynamic arrays

description: Protein sequence homology/orthology between Vitis and Arabidopsis and/or Malus domestica - Solanum lycopersicum - Nicotania tabaccum. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3610064_d7.v1
title: Additional file 8: of Anchoring genome sequence to chromosomes of the central bearded dragon (Pogona vitticeps) enables reconstruction of ancestral squamate macrochromosomes and identifies sequence content of the Z chromosome

description: Script A3 to chain pairwise super-scaffolds into larger chains. (CGI 8Â kb)
DOI: 10.6084/m9.figshare.c.3610043_d12.v1
title: Additional file 9: of Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana

description: Table S6. Components of the acclimation-induced protein-protein interaction network of Rsch shown in Fig.Â 8b of the main document. (XLSX 392 kb)
DOI: 10.6084/m9.figshare.c.3610043_d13.v1
title: Additional file 11: of Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana

description: Table S9. Protein dynamics related to photosynthetic dark and light reactions. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3610091_d2.v1
title: Additional file 2: Table S1. of Effects of thromboprophylaxis on mesenchymal stromal cells during osteogenic differentiation: an in-vitro study comparing enoxaparin with rivaroxaban

description: Showing the primer sequences. (XLSX 9Â kb)
DOI: 10.23668/psycharchives.3115
title: What causes the insight memory advantage?

description: Prior research indicates that solutions accompanied by an Aha! experience are remembered better than those missing this feeling of epiphany. The question for the present studies was whether this insight memory advantage for problem solutions is modulated by the affective component of insight (the strong feelings that typically accompany the Aha! experience), or by the cognitive component (the restructuring or representational change that occurs during insightful problem solving). In both studies, participants viewed a set of magic trick videos to generate solutions for how each trick was done, and memory for the generated solutions was tested after a week delay. They also indicated the extent to which they experienced an Aha! moment at solution along with other perceptions of their experience. In the second study, they additionally rated the relevance of five action verbs for each trick (including one that implied the correct solution) multiple times during solution as a measure of restructuring the problem representation. The explanation for the insight memory advantage that was best supported by the results is that it is the joint consequence of finding correct solutions, the subjective feeling that one has found a correct solution (certainty), and experiencing an emotional pleasurable reaction during the problem solving process that all contribute to better memory for the solution. However, it did not seem to rely on having reached the solution via a sudden restructuring process.
description: Dataset for: Danek, A. H., & Wiley, J. (2020). What causes the insight memory advantage? Cognition, 205, 104411. https://doi.org/10.1016/j.cognition.2020.104411
DOI: 10.6084/m9.figshare.c.3610148_d1.v1
title: Additional file 5: Table S4. of 
                     X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species

description: GO categories that are enriched in genes with high impact variants. (XLSX 48 kb)
DOI: 10.23668/psycharchives.3117
title: Dataset for: Does the attentional control scale measure attentional control? Evidence of no relationship with antisaccade performance

description: Attentional control theory indicates a relationship between poor attentional control and heightened anxiety vulnerability. While attentional control is often assessed via self-report, there is inconsistency as to whether such self-report measures (in particular the Attentional Control Scale) provide an indication of genuine attentional control abilities. The present study sought to determine the presence or absence of a relationship between questionnaire and behavioural measures of attentional control, and to examine the association between these measures and psychological symptoms of depression, anxiety and stress, in a large non-clinical sample. Undergraduate students and individuals from the community (final sample n= 207) completed the Attentional Control Scale and measures of psychological distress (depression, anxiety, stress), as well as the antisaccade task as an objective measure of attentional control. Antisaccade performance was significantly associated with both anxiety (r= -.187) and stress (r= -.195). Self-reported attentional control also correlated significantly with all measures of psychological distress (r= -.307 to -.459). Critically however, there was no evidence for an association between full or subscale measures on the Attentional Control Scale and antisaccade performance (r= .027 to .078). Bayesian analyses indicated moderate to strong evidence that the null hypothesis is true (B10= 0.094 - 0.161), suggesting that this finding was likely to represent the genuine absence of an association. The present study is consistent with growing evidence that self-reported measures of attentional control are not in fact measuring variation in attentional control abilities, and speaks to the importance of incorporating objective assessments of attentional control in research.
description: Dataset for: Todd, J., Notebaert, L., & Clarke, P. J. F (2022). The association between self-report and behavioural measure of attentional control: Evidence of no relationship between ACS scores and antisaccade performance. Personality and Individual Differences, 184. https://doi.org/10.1016/j.paid.2021.111168
DOI: 10.6084/m9.figshare.c.3610148_d2.v1
title: Additional file 1: Table S1. of 
                     X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species

description: 24 inter-chromosomal rearrangement events between X. couchianus and X. maculatus. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3610187_d3.v1
title: MOESM7 of Multimodal interaction in the insect brain

description: Additional file 7. Peak latency data for Experiment 4.
DOI: 10.6084/m9.figshare.c.3610187_d4.v1
title: MOESM4 of Multimodal interaction in the insect brain

description: Additional file 4. Â â  Dose-response data for Experiment 4.
DOI: 10.6084/m9.figshare.c.3610187_d5.v1
title: MOESM6 of Multimodal interaction in the insect brain

description: Additional file 6. Response latency data for Experiment 4.
DOI: 10.6084/m9.figshare.c.3610187_d6.v1
title: MOESM2 of Multimodal interaction in the insect brain

description: Additional file 2. Â â  Dose-response data for Experiment 2.
DOI: 10.6084/m9.figshare.c.3610211_d3.v1
title: Additional file 4: of Next generation genome sequencing reveals phylogenetic clades with different level of virulence among Salmonella Typhimurium clinical human isolates in Hong Kong

description: SNPs located at virulence genes of S. Typhimurium. The list of S. Typhimurium virulence genes was retrieved from VFDB. Nucleotide positions were based on the LT2 reference genome. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3610187_d7.v1
title: MOESM8 of Multimodal interaction in the insect brain

description: Additional file 8. Â Data forÂ different stimulus timings with higher odour concentration for Experiment 5.
DOI: 10.6084/m9.figshare.c.3610187_d8.v1
title: MOESM9 of Multimodal interaction in the insect brain

description: Additional file 9. Â Data forÂ different stimulus timings with lower odour concentration for Experiment 5.
DOI: 10.6084/m9.figshare.c.3610250_d3.v1
title: Additional file 3: of Motif oriented high-resolution analysis of ChIP-seq data reveals the topological order of CTCF and cohesin proteins on DNA

description: Table S11. Investigation of curvature/bendability on CTS-centered sequences. The table shows the sequence of 400 bp frame of 16964 CTSs, which were identified with ChIA-PET analysis sequences. (XLSX 1305 kb)
DOI: 10.6084/m9.figshare.c.3610271_d1.v1
title: Additional file 3: Table S7. of Development of a SNP-based assay for measuring genetic diversity in the Tasmanian devil insurance population

description: SNP genotypes for pedigree determination. (XLSX 279 kb)
DOI: 10.6084/m9.figshare.c.3610280_d1.v1
title: Additional file 1: of Lower-extremity resistance training on unstable surfaces improves proxies of muscle strength, power and balance in healthy older adults: a randomised control trial

description: This file comprises a table providing data of pre- and post-measures of the study. (XLSX 43Â kb)
DOI: 10.6084/m9.figshare.c.3610286_d1.v1
title: MOESM1 of Decreasing the expression of PICALM reduces endocytosis and the activity of β-secretase: implications for Alzheimer’s disease

description: Additional file 1. These data were used to produce the graphs shown in Figures 1, 3, 4, 5, 6, 7, 8 and 9.
DOI: 10.6084/m9.figshare.c.3610271_d3.v1
title: Additional file 2: Table S6. of Development of a SNP-based assay for measuring genetic diversity in the Tasmanian devil insurance population

description: Microsatellite genotypes for pedigree determination. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3610292_d1.v1
title: Additional file 1: of Pregnancy and estrogen enhance neural progenitor-cell proliferation in the vomeronasal sensory epithelium

description: Excel workbook containing the raw data from Fig.Â  4b , d and f . (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3610292_d2.v1
title: Additional file 2: of Pregnancy and estrogen enhance neural progenitor-cell proliferation in the vomeronasal sensory epithelium

description: Excel workbook containing the mapping statistics of the RNAseq data for each sample, along with the accession numbers for the raw data; the normalized counts for the whole transcriptome; the differential expression analysis between the pregnant and control samples; the gene ontology categories significantly overrepresented in the differentially expressed genes; the normalized counts for the VR genes, accounting for total VSN number; and the differential expression analysis on the VR genes only, after normalization for VSN number, between the pregnant and control samples. The column ‘length’ corresponds to the total exonic bases in all transcripts from the gene. For the differential expression sheets, the columns contain the following data: ‘baseMean’, corresponds to the mean normalized expression value for the gene across all samples; ‘log2FoldChange’, is the fold change between the pregnant and control samples, log2 transformed; ‘lfcSE’, corresponds to the standard error associated with the fold change estimation; ‘stat’, is the Wald statistic; ‘pvalue’ is the P value of the test; and ‘padj’ is the P value after adjusting for multiple testing (Benjamini-Hochberg). Genes that have both their ‘pvalue’ and ‘padj’ set to NA contain outliers; genes with only their ‘padj’ set to NA were filtered prior to the test because their normalized counts were too low. (XLSX 11150 kb)
DOI: 10.6084/m9.figshare.c.3610349_d2.v1
title: Additional file 4: of Assessment of genetically engineered Trabulsiella odontotermitis as a ‘Trojan Horse’ for paratransgenesis in termites

description: Supplementary tables. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3610361_d1.v1
title: Additional file 2. of White-nose syndrome survivors do not exhibit frequent arousals associated with Pseudogymnoascus destructans infection

description: Full thermal dataset for all individual bats used for study.