cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6157718.v1
title: Supplemental materials of G3/2018/200298 manuscript: Multiple arginine residues are methylated in Drosophila Mre11 and required for survival following ionizing radiation

description: Supplemental materials of Multiple arginine residues are methylated in Drosophila Mre11 and required for survival following ionizing radiation
DOI: 10.6084/m9.figshare.6158051
title: Additional file 2: of Identification of a cold-tolerant locus in rice (Oryza sativa L.) using bulked segregant analysis with a next-generation sequencing strategy

description: Table S1. The PSST of T-pool and S-pool. Table S2. Sequences of specific primers for PSST candidate genes. Table S3. Sequences of specific primers for SNP loci in LOC_Os06g39750. Table S4. Heading time, plant height, panicle number, and grain yield per plant of parents and RIL population in 2014, 2015 and 2016. Table S5. Coefficients of correlation (r) among PSST and PSSN in 2014, 2015 and 2016. Table S6. QTLs for PSSN of rice detected in 3 years. Table S7. Summary of Seq-BSA data for each sample. Table S8. Annotation information of predicted genes for PSST. Table S9. nsSNPs between DN422 and KY131 along with their S-pool and T-pool. Table S10. Information of SNP/InDel in LOC_Os06g39740 and LOC_Os06g39750. Table S11. Haplotype of LOC_Os06g39750 in RIL population and mean PSST of each RIL. Table S12. The Arabidopsis homologous genes of LOC_Os06g39750. (XLS 174 kb)
DOI: 10.6084/m9.figshare.6158051.v1
title: Additional file 2: of Identification of a cold-tolerant locus in rice (Oryza sativa L.) using bulked segregant analysis with a next-generation sequencing strategy

description: Table S1. The PSST of T-pool and S-pool. Table S2. Sequences of specific primers for PSST candidate genes. Table S3. Sequences of specific primers for SNP loci in LOC_Os06g39750. Table S4. Heading time, plant height, panicle number, and grain yield per plant of parents and RIL population in 2014, 2015 and 2016. Table S5. Coefficients of correlation (r) among PSST and PSSN in 2014, 2015 and 2016. Table S6. QTLs for PSSN of rice detected in 3 years. Table S7. Summary of Seq-BSA data for each sample. Table S8. Annotation information of predicted genes for PSST. Table S9. nsSNPs between DN422 and KY131 along with their S-pool and T-pool. Table S10. Information of SNP/InDel in LOC_Os06g39740 and LOC_Os06g39750. Table S11. Haplotype of LOC_Os06g39750 in RIL population and mean PSST of each RIL. Table S12. The Arabidopsis homologous genes of LOC_Os06g39750. (XLS 174 kb)
DOI: 10.6084/m9.figshare.6158195
title: Additional file 2: of IMP1 regulates UCA1-mediated cell invasion through facilitating UCA1 decay and decreasing the sponge effect of UCA1 for miR-122-5p

description: miRNAs associated with UCA1. (XLSX 375 kb)
DOI: 10.6084/m9.figshare.6158195.v1
title: Additional file 2: of IMP1 regulates UCA1-mediated cell invasion through facilitating UCA1 decay and decreasing the sponge effect of UCA1 for miR-122-5p

description: miRNAs associated with UCA1. (XLSX 375 kb)
DOI: 10.6084/m9.figshare.6158360
title: Additional file 10: of Compositional and mutational rate heterogeneity in mitochondrial genomes and its effect on the phylogenetic inferences of Cimicomorpha (Hemiptera: Heteroptera)

description: Optimal partitioning schemes selected by PartitionFinder for each dataset. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6158360.v1
title: Additional file 10: of Compositional and mutational rate heterogeneity in mitochondrial genomes and its effect on the phylogenetic inferences of Cimicomorpha (Hemiptera: Heteroptera)

description: Optimal partitioning schemes selected by PartitionFinder for each dataset. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6158381
title: Additional file 11: of Compositional and mutational rate heterogeneity in mitochondrial genomes and its effect on the phylogenetic inferences of Cimicomorpha (Hemiptera: Heteroptera)

description: A series of in-house shell scripts used in this study. (TXT 664 bytes)
DOI: 10.6084/m9.figshare.6158381.v1
title: Additional file 11: of Compositional and mutational rate heterogeneity in mitochondrial genomes and its effect on the phylogenetic inferences of Cimicomorpha (Hemiptera: Heteroptera)

description: A series of in-house shell scripts used in this study. (TXT 664 bytes)
DOI: 10.6084/m9.figshare.6158399
title: Additional file 1: of Compositional and mutational rate heterogeneity in mitochondrial genomes and its effect on the phylogenetic inferences of Cimicomorpha (Hemiptera: Heteroptera)

description: Annotation and organization of five Tingidae mt-genomes sequenced in this study. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.6158399.v1
title: Additional file 1: of Compositional and mutational rate heterogeneity in mitochondrial genomes and its effect on the phylogenetic inferences of Cimicomorpha (Hemiptera: Heteroptera)

description: Annotation and organization of five Tingidae mt-genomes sequenced in this study. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.6158489
title: Additional file 6: of Compositional and mutational rate heterogeneity in mitochondrial genomes and its effect on the phylogenetic inferences of Cimicomorpha (Hemiptera: Heteroptera)

description: Posterior predictive analyses of sequence homoplasy. DH is the difference between the observed and predicted homoplasy. Values closer to zero indicate better predictions. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6158489.v1
title: Additional file 6: of Compositional and mutational rate heterogeneity in mitochondrial genomes and its effect on the phylogenetic inferences of Cimicomorpha (Hemiptera: Heteroptera)

description: Posterior predictive analyses of sequence homoplasy. DH is the difference between the observed and predicted homoplasy. Values closer to zero indicate better predictions. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6158525
title: Additional file 8: of Compositional and mutational rate heterogeneity in mitochondrial genomes and its effect on the phylogenetic inferences of Cimicomorpha (Hemiptera: Heteroptera)

description: Collection information of 5 species newly sequenced in present study. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6158525.v1
title: Additional file 8: of Compositional and mutational rate heterogeneity in mitochondrial genomes and its effect on the phylogenetic inferences of Cimicomorpha (Hemiptera: Heteroptera)

description: Collection information of 5 species newly sequenced in present study. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6158546
title: Additional file 9: of Compositional and mutational rate heterogeneity in mitochondrial genomes and its effect on the phylogenetic inferences of Cimicomorpha (Hemiptera: Heteroptera)

description: Complete or nearly complete mt-genomes used in this study. Mt-genome sequences of 5 newly sequenced species and 24 species generated from our previous studies were highlighted in bold. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.6158546.v1
title: Additional file 9: of Compositional and mutational rate heterogeneity in mitochondrial genomes and its effect on the phylogenetic inferences of Cimicomorpha (Hemiptera: Heteroptera)

description: Complete or nearly complete mt-genomes used in this study. Mt-genome sequences of 5 newly sequenced species and 24 species generated from our previous studies were highlighted in bold. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.6158639
title: Additional file 1: of Similarity of the dog and human gut microbiomes in gene content and response to diet

description: Table S1. Properties of the dogs. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.6158639.v1
title: Additional file 1: of Similarity of the dog and human gut microbiomes in gene content and response to diet

description: Table S1. Properties of the dogs. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.6158648
title: Additional file 2: of Similarity of the dog and human gut microbiomes in gene content and response to diet

description: Table S2. Basic statistics of the metagenomics data: number of base pairs and reads per sample. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.6158648.v1
title: Additional file 2: of Similarity of the dog and human gut microbiomes in gene content and response to diet

description: Table S2. Basic statistics of the metagenomics data: number of base pairs and reads per sample. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.6158663
title: Additional file 3 of Similarity of the dog and human gut microbiomes in gene content and response to diet

description: Table S3. Gene annotation statistics. (XLSX 6Â kb)
DOI: 10.6084/m9.figshare.6158663.v1
title: Additional file 3 of Similarity of the dog and human gut microbiomes in gene content and response to diet

description: Table S3. Gene annotation statistics. (XLSX 6Â kb)
DOI: 10.6084/m9.figshare.6158675
title: Additional file 4 of Similarity of the dog and human gut microbiomes in gene content and response to diet

description: Table S4. Phylum-level relative abundances of the microbiota. (XLSX 5Â kb)
DOI: 10.6084/m9.figshare.6158675.v1
title: Additional file 4 of Similarity of the dog and human gut microbiomes in gene content and response to diet

description: Table S4. Phylum-level relative abundances of the microbiota. (XLSX 5Â kb)
DOI: 10.6084/m9.figshare.6158690
title: Additional file 5: of Similarity of the dog and human gut microbiomes in gene content and response to diet

description: Table S5. Spearman correlation and SparCC-derived p value for all nodes in the co-abundance correlation network analyzed. (XLSX 7Â kb)
DOI: 10.6084/m9.figshare.6158690.v1
title: Additional file 5: of Similarity of the dog and human gut microbiomes in gene content and response to diet

description: Table S5. Spearman correlation and SparCC-derived p value for all nodes in the co-abundance correlation network analyzed. (XLSX 7Â kb)
DOI: 10.6084/m9.figshare.6158699
title: Additional file 6: of Similarity of the dog and human gut microbiomes in gene content and response to diet

description: Table S6. Nutritional content of the 3 diets used in this study. Values shown refer to percentage (%) by weight. (XLSX 4Â kb)
DOI: 10.6084/m9.figshare.6158699.v1
title: Additional file 6: of Similarity of the dog and human gut microbiomes in gene content and response to diet

description: Table S6. Nutritional content of the 3 diets used in this study. Values shown refer to percentage (%) by weight. (XLSX 4Â kb)
DOI: 10.6084/m9.figshare.6163844.v1
title: A Python Program Analysis Infrastructure to Facilitate Better Data Processing

description: p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px 'Helvetica Neue'; -webkit-text-stroke: #000000}
span.s1 {font-kerning: none}



a powerful Python analysis infrastructure to support the three most popular kinds of analyses: static, dynamic and symbolic, just like LLVM for C/C++ and KLEE for C. This infrastructure will enable many researches across multiple CISE areas such as software engineering, programming languages, machine learning, AI and data science. With Python being the number one language in ML and data science, the infrastructure will stimulate exciting new research in improving data processing effectiveness, reliability, stability, and efficiency.
DOI: 10.6084/m9.figshare.6164186
title: Additional file 10: of Intraspecific variation of residual heterozygosity and its utility for quantitative genetic studies in maize

description: Table S4. Empirical resolution for the fine mapping of QTLs using the present HIF library. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.6164186.v1
title: Additional file 10: of Intraspecific variation of residual heterozygosity and its utility for quantitative genetic studies in maize

description: Table S4. Empirical resolution for the fine mapping of QTLs using the present HIF library. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.6164213
title: Additional file 11: of Intraspecific variation of residual heterozygosity and its utility for quantitative genetic studies in maize

description: Table S5. QTLs in repulsion-phase linkage in pericentromeric regions. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.6164213.v1
title: Additional file 11: of Intraspecific variation of residual heterozygosity and its utility for quantitative genetic studies in maize

description: Table S5. QTLs in repulsion-phase linkage in pericentromeric regions. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.6164255
title: Additional file 2: of Intraspecific variation of residual heterozygosity and its utility for quantitative genetic studies in maize

description: Data S1. Summary of QTL intervals for agronomic traits identified in 10 populations. (XLSX 66Â kb)
DOI: 10.6084/m9.figshare.6164255.v1
title: Additional file 2: of Intraspecific variation of residual heterozygosity and its utility for quantitative genetic studies in maize

description: Data S1. Summary of QTL intervals for agronomic traits identified in 10 populations. (XLSX 66Â kb)
DOI: 10.6084/m9.figshare.6164357
title: Additional file 7: of Intraspecific variation of residual heterozygosity and its utility for quantitative genetic studies in maize

description: Table S1. Allele segregation distortion and recombination in hotspot regions. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.6164357.v1
title: Additional file 7: of Intraspecific variation of residual heterozygosity and its utility for quantitative genetic studies in maize

description: Table S1. Allele segregation distortion and recombination in hotspot regions. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.6164375
title: Additional file 8: of Intraspecific variation of residual heterozygosity and its utility for quantitative genetic studies in maize

description: Table S2. Details of allele segregation distortion in 4 hotspot regions. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.6164375.v1
title: Additional file 8: of Intraspecific variation of residual heterozygosity and its utility for quantitative genetic studies in maize

description: Table S2. Details of allele segregation distortion in 4 hotspot regions. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.6164393
title: Additional file 9: of Intraspecific variation of residual heterozygosity and its utility for quantitative genetic studies in maize

description: Table S3. Coverage and depth of the present heterogeneous inbred family line library. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.6164393.v1
title: Additional file 9: of Intraspecific variation of residual heterozygosity and its utility for quantitative genetic studies in maize

description: Table S3. Coverage and depth of the present heterogeneous inbred family line library. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.6164546
title: Additional file 1: of Sex differences in kinematic adaptations to muscle fatigue induced by repetitive upper limb movements

description: Correlation between each kinematic variable Non-Fatigue value and endurance time for men and women. HT: Humerothoracic, p: p value, r: Pearson correlation coefficient, rup/rlow: upper and lower bounds of r's 95% confident interval. Significant correlations are indicated in red. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6164546.v1
title: Additional file 1: of Sex differences in kinematic adaptations to muscle fatigue induced by repetitive upper limb movements

description: Correlation between each kinematic variable Non-Fatigue value and endurance time for men and women. HT: Humerothoracic, p: p value, r: Pearson correlation coefficient, rup/rlow: upper and lower bounds of r's 95% confident interval. Significant correlations are indicated in red. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6164750
title: Additional file 1: of Overexpression of Contactin 1 promotes growth, migration and invasion in Hs578T breast cancer cells

description: The raw image of Western blots. (ZIP 581 kb)
DOI: 10.6084/m9.figshare.6164750.v1
title: Additional file 1: of Overexpression of Contactin 1 promotes growth, migration and invasion in Hs578T breast cancer cells

description: The raw image of Western blots. (ZIP 581 kb)
DOI: 10.6084/m9.figshare.6164771
title: Additional file 1: of Genome-wide analysis of family-1 UDP glycosyltransferases (UGT) and identification of UGT genes for FHB resistance in wheat (Triticum aestivum L.)

description: Table S1. List of the selected UGT genes and their primers sequences used for the RT-qPCR expression assay. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6164771.v1
title: Additional file 1: of Genome-wide analysis of family-1 UDP glycosyltransferases (UGT) and identification of UGT genes for FHB resistance in wheat (Triticum aestivum L.)

description: Table S1. List of the selected UGT genes and their primers sequences used for the RT-qPCR expression assay. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6164807
title: Additional file 3: of Genome-wide analysis of family-1 UDP glycosyltransferases (UGT) and identification of UGT genes for FHB resistance in wheat (Triticum aestivum L.)

description: Table S2. List of the Arabidopsis UGT genes used in this study for the identification of the phylogenetic groups. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6164807.v1
title: Additional file 3: of Genome-wide analysis of family-1 UDP glycosyltransferases (UGT) and identification of UGT genes for FHB resistance in wheat (Triticum aestivum L.)

description: Table S2. List of the Arabidopsis UGT genes used in this study for the identification of the phylogenetic groups. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6164822
title: Additional file 4: of Genome-wide analysis of family-1 UDP glycosyltransferases (UGT) and identification of UGT genes for FHB resistance in wheat (Triticum aestivum L.)

description: Table S3. The intron information of the wheat UGT genes. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.6164822.v1
title: Additional file 4: of Genome-wide analysis of family-1 UDP glycosyltransferases (UGT) and identification of UGT genes for FHB resistance in wheat (Triticum aestivum L.)

description: Table S3. The intron information of the wheat UGT genes. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.6164834
title: Additional file 5: of Genome-wide analysis of family-1 UDP glycosyltransferases (UGT) and identification of UGT genes for FHB resistance in wheat (Triticum aestivum L.)

description: Table S4. Expression data of UGT genes in five different tissues at different developmental stages. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.6164834.v1
title: Additional file 5: of Genome-wide analysis of family-1 UDP glycosyltransferases (UGT) and identification of UGT genes for FHB resistance in wheat (Triticum aestivum L.)

description: Table S4. Expression data of UGT genes in five different tissues at different developmental stages. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.6164852
title: Additional file 6: of Genome-wide analysis of family-1 UDP glycosyltransferases (UGT) and identification of UGT genes for FHB resistance in wheat (Triticum aestivum L.)

description: Table S5. Expression data of UGT genes after F. graminearum inoculation. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.6164852.v1
title: Additional file 6: of Genome-wide analysis of family-1 UDP glycosyltransferases (UGT) and identification of UGT genes for FHB resistance in wheat (Triticum aestivum L.)

description: Table S5. Expression data of UGT genes after F. graminearum inoculation. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.6166286
title: Identification of cancer-related miRNA-lncRNA biomarkers using a basic miRNA-lncRNA network

description: The table contains the expression data of miRNAs and lncRNAs in the BRCA, KIRC, LUAD, LUSC, PRAD and THCA.
DOI: 10.5281/zenodo.10867608
title: The Effect of Tourniquet Reperfusion Interval on MDA Levels and Skeletal Muscle Damage in the Treatment of Long Bone Fractures

description: Abstract

Background: Tourniquets are often used to assist hemostasis during surgery, even if they cause complications. Blood circulation return leads to ischemic reperfusion injury. Post-tourniquet syndromes, such as pain, swelling, and muscle weakness, occur up to six weeks after surgery. Thus, it is necessary to investigate the duration of reperfusion intervals to prevent ischemic reperfusion injury, specifically to muscle tissue.

Method: An experimental study using 48 male white rats (Rattus norvegicus) deliberately fractured in the tibial bone. The rats were divided into two treatment groups, A and B, each receiving four treatments. So, there were eight groups in total. In the control group, both A1 and B1, the tourniquet was installed using orthodontic rubber for 3 hours, while for the others for 2 hours, it was deflated for 5, 10, and 15 minutes, respectively, then the tourniquet was reattached for 1 hour. Group A was sacrificed 1 hour after tourniquet deflation and then checked for MDA levels and muscle histology. In group B, it was done on day 14. Data results were analyzed using one-way ANOVA.

Result: In group A, there was a significant difference between the ten and 15-minute groups. In group B, there was a significant difference between groups; the optimal decrease in PI occurred in the 10-minute reperfusion interval treatment, which was 42.63% for group A and 32.27 % for group B. Significant differences existed between the control and reperfusion interval groups in measuring MDA levels in groups A and B.

Conclusion: The reperfusion interval can reduce the incidence of ischemic reperfusion injury in the muscle organ at the distal tourniquet, characterized by MDA levels and a percentage of muscle tissue injury. The 10-minute reperfusion interval is the most effective in restoring aerobic metabolism and preventing excessive ROS production.
DOI: 10.5281/zenodo.7069887
title: The Effect of Tourniquet Reperfusion Interval on MDA Levels and Skeletal Muscle Damage in the Treatment of Long Bone Fractures

description: Abstract

Background: Tourniquets are often used to assist hemostasis during surgery, even if they cause complications. Blood circulation return leads to ischemic reperfusion injury. Post-tourniquet syndromes, such as pain, swelling, and muscle weakness, occur up to six weeks after surgery. Thus, it is necessary to investigate the duration of reperfusion intervals to prevent ischemic reperfusion injury, specifically to muscle tissue.

Method: An experimental study using 48 male white rats (Rattus norvegicus) deliberately fractured in the tibial bone. The rats were divided into two treatment groups, A and B, each receiving four treatments. So, there were eight groups in total. In the control group, both A1 and B1, the tourniquet was installed using orthodontic rubber for 3 hours, while for the others for 2 hours, it was deflated for 5, 10, and 15 minutes, respectively, then the tourniquet was reattached for 1 hour. Group A was sacrificed 1 hour after tourniquet deflation and then checked for MDA levels and muscle histology. In group B, it was done on day 14. Data results were analyzed using one-way ANOVA.

Result: In group A, there was a significant difference between the ten and 15-minute groups. In group B, there was a significant difference between groups; the optimal decrease in PI occurred in the 10-minute reperfusion interval treatment, which was 42.63% for group A and 32.27 % for group B. Significant differences existed between the control and reperfusion interval groups in measuring MDA levels in groups A and B.

Conclusion: The reperfusion interval can reduce the incidence of ischemic reperfusion injury in the muscle organ at the distal tourniquet, characterized by MDA levels and a percentage of muscle tissue injury. The 10-minute reperfusion interval is the most effective in restoring aerobic metabolism and preventing excessive ROS production.
DOI: 10.6084/m9.figshare.6166286.v1
title: Identification of cancer-related miRNA-lncRNA biomarkers using a basic miRNA-lncRNA network

description: The table contains the expression data of miRNAs and lncRNAs in the BRCA, KIRC, LUAD, LUSC, PRAD and THCA.
DOI: 10.6084/m9.figshare.6168290
title: Additional file 1: of Analysis of hepatic transcriptome demonstrates altered lipid metabolism following Lactobacillus johnsonii BS15 prevention in chickens with subclinical necrotic enteritis

description: Table S1. Details for regulatory genes and pathways related to lipid metabolism in comparison of control group and SNE group. (XLSX 120 kb)