cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4747594
title: In <i>silico</i> investigation on the inhibition of Aβ<sub>42</sub> aggregation by Aβ<sub>40</sub> peptide by potential of mean force study

description: Recent experimental data revealed that small, soluble Amyloid beta (Aβ<sub>42</sub>) oligomers, especially dimers impair synaptic plasticity and memory leading to Alzheimer’s disease. Here, we have studied dimerization of Aβ<sub>42</sub>/Aβ<sub>42</sub> homo-dimer and Aβ<sub>40</sub>/Aβ<sub>42</sub> hetero-dimer in terms of free energy profile by all-atom simulations using the ff99SB force field. We have found that in the presence of Aβ<sub>40</sub> peptide, there exists a strong tendency to form a hetero-dimer with Aβ<sub>42</sub> peptide, suggesting that a possible co-oligomerization. Furthermore, we have investigated the effects of Aβ<sub>40</sub> on the Aβ<sub>42</sub> peptide. Our study also shows that in presence of Aβ<sub>40</sub>, the beta-content of Aβ<sub>42</sub> monomer is reduced. Additionally, certain residues important for bending in Aβ<sub>42</sub> peptide attained an increased flexibility in the presence of Aβ<sub>40</sub>. The salt-bridge destabilization also manifested the impact of Aβ<sub>40</sub> on Aβ<sub>42</sub> peptide as a whole. Based on this, one may expect that Aβ<sub>40</sub> inhibits the aggregation propensity of Aβ<sub>42</sub>. Moreover, the binding free energy obtained by the molecular mechanics–Poisson–Boltzmann surface area method also revealed a strong affinity between the two isoforms thereby suggests that Aβ<sub>40</sub> binding induces conformational change in Aβ<sub>42</sub>. Our results suggest that co-oligomerization of Aβ isoforms may play a substantial role in Alzheimer’s disease.
DOI: 10.17633/rd.brunel.4747573.v1
title: Masque of Augurs - Full Performance

description: Film of workshop performance of The Masque of Augurs at the Banqueting House Whitehall, performed on 10th May 2016 as part of the collaborative research project, 'Exploring the potential of combining performance and digital research in a heritage context'. The project was funded by the AHRC and was a partnership between Brunel University London, Historic Royal Palaces and Edinburgh University.
DOI: 10.6084/m9.figshare.4747552
title: Parallel constrained Delaunay triangulation on the GPU

description: In this paper, we propose a new graphics processing unit (GPU) method able to compute the 2D constrained Delaunay triangulation (CDT) of a planar straight-line graph consisting of points and segments. All existing methods compute the Delaunay triangulation of the given point set, insert all the segments, and then finally transform the resulting triangulation into the CDT. To the contrary, our novel approach simultaneously inserts points and segments into the triangulation, taking special care to avoid conflicts during retriangulations due to concurrent insertion of points or concurrent edge flips. Our implementation using the Compute Unified Device Architecture programming model on NVIDIA GPUs improves, in terms of running time, the best known GPU-based approach to the CDT problem.
DOI: 10.6084/m9.figshare.4747552.v1
title: Parallel constrained Delaunay triangulation on the GPU

description: In this paper, we propose a new graphics processing unit (GPU) method able to compute the 2D constrained Delaunay triangulation (CDT) of a planar straight-line graph consisting of points and segments. All existing methods compute the Delaunay triangulation of the given point set, insert all the segments, and then finally transform the resulting triangulation into the CDT. To the contrary, our novel approach simultaneously inserts points and segments into the triangulation, taking special care to avoid conflicts during retriangulations due to concurrent insertion of points or concurrent edge flips. Our implementation using the Compute Unified Device Architecture programming model on NVIDIA GPUs improves, in terms of running time, the best known GPU-based approach to the CDT problem.
DOI: 10.6084/m9.figshare.4747525
title: First megatheropod tracks from the Lower Jurassic upper Elliot Formation (Roma, Lesotho)

description: Photographs and models of Matobo megatheropod trackway D (<i>Kayentapus</i> <i>ambrokholohali</i>) left and right pes. The pes impressions are of three slender digits without digital pads impressions or claw marks. The rounded digits and the strongly V-shaped metatarsophalangeal margin had been lightly impressed on the palaeosurface. <br><br>Sciscio L, Bordy EM, Abrahams M, Knoll F, McPhee BW (2017) The first megatheropod tracks from the Lower Jurassic upper Elliot Formation, Karoo Basin, Lesotho. PLoS ONE12(10): e0185941. https://doi.org/10.1371/journal.pone.0185941
DOI: 10.6084/m9.figshare.4747483
title: Velocity field during the entire cardiac cycle from An Euler–Lagrange approach for studying blood flow in an aneurysmal geometry

description: Animations of the velocity field during the cardiac cycle for rigid and pulsating aortic wall
DOI: 10.6084/m9.figshare.4747525.v1
title: First megatheropod tracks from the Lower Jurassic upper Elliot Formation (Roma, Lesotho)

description: Photographs and models of Matobo megatheropod trackway D (<i>Kayentapus</i> <i>ambrokholohali</i>) left and right pes. The pes impressions are of three slender digits without digital pads impressions or claw marks. The rounded digits and the strongly V-shaped metatarsophalangeal margin had been lightly impressed on the palaeosurface. <br><br>Sciscio L, Bordy EM, Abrahams M, Knoll F, McPhee BW (2017) The first megatheropod tracks from the Lower Jurassic upper Elliot Formation, Karoo Basin, Lesotho. PLoS ONE12(10): e0185941. https://doi.org/10.1371/journal.pone.0185941
DOI: 10.6084/m9.figshare.4747483.v1
title: Velocity field during the entire cardiac cycle from An Euler–Lagrange approach for studying blood flow in an aneurysmal geometry

description: Animations of the velocity field during the cardiac cycle for rigid and pulsating aortic wall
DOI: 10.6084/m9.figshare.4747420
title: JOSS paper statistics (29 March 2017)

description: Statistics on papers accepted and published by the Journal of Open Source Software (JOSS) as of 29 March 2017, since its release in May 2016.
DOI: 10.6084/m9.figshare.4747411
title: NDF Digitisation Survey Results (2013, 2014, 2016)

description: Survey data from 203, 2014 and 2016 surveys conducted by National Digital Forum to help better understand the state of digitisation activity in the New Zealand galleries, libraries, archives and museums (GLAM) sector.<br>Names of institutions have been removed to protect privacy.<br>
DOI: 10.6084/m9.figshare.4747411.v1
title: NDFNZ Digitisation Survey Results 2013 2014 2016.xlsx

description: Survey data from 203, 2014 and 2016 surveys conducted by National Digital Forum to help better understand the state of digitisation activity in the New Zealand galleries, libraries, archives and museums (GLAM) sector.<br>Names of institutions have been removed to protect privacy.<br>
DOI: 10.6084/m9.figshare.4747417.v1
title: Floating Offshore Wind Farm Optimization

description: Figures from 2017 publication (Forinash, Miller, and DuPont). Floating offshore wind farm optimization using an Extended Pattern Search (EPS) algorithm. Unidirectional, constant wind speed test case. Comparison to EPS for onshore wind farm optimization, and comparable literature.
DOI: 10.6084/m9.figshare.4747402
title: Supplementary datasets manuscript "Accumulation of heme biosynthetic intermediates contributes to the antibacterial action of the metalloid tellurite" Nature Communications

description: Supplementary dataset 1. Chemical genomics of TeO32-. Positive or negative chemical genetic interaction scores represent increased or decreased TeO32- resistance, respectively. Supplementary dataset 2. Single nucleotide polymorphisms found in evolved strains EM40, EM41, and EM2.
DOI: 10.6084/m9.figshare.4747408
title: Corpus "TUITS" IRÓNICOS

description: Esta es una colección de "tuits" en español irónicos y no irónicos (background) extraídos de la red social Twitter. La parte irónica fue curada a mano.<br>El procedimiento para obtener la colección fue el siguiente:<br>* Para los textos irónicos se extrajo "tuits" con los hashtags #ironía y #sarcasmo* De los "tuits" extraidos, manualmente se etiquetaron los que se consideraron irónicos* Para los textos de background, se extrajeron "tuits" con palabras normales, eg. donde o que* Para mayor detalle del procedimiento etiquetación consultar este el reporte técnico y para mayor detalle de la recolección pueden consultar la siguiente tesis:<br>Jasso, Gabriela: Identificación de ironía en textos cortos. Facultad de ingeniería, Univesidad Nacional Autónoma de México.. Facultad de Ingeniería, Universidad Nacional Autónoma de México. 2016.<br>
DOI: 10.6084/m9.figshare.4747417.v2
title: An Extended Pattern Search Approach for Optimizing Offshore Floating Wind Farms

description: Figures from 2017 publication (Miller, Forinash, and DuPont). Floating offshore wind farm optimization using an Extended Pattern Search (EPS) algorithm. Unidirectional, constant wind speed test case. Comparison to EPS for onshore wind farm optimization, and comparable literature.
DOI: 10.17608/k6.auckland.4747405
title: ISSP2016: Role of Government V

description: The third International Social Survey Programme (ISSP) survey by COMPASS Research Centre at the University of Auckland.Attitudes to compliance with the law; attitudes to various forms of protest against the government; views on freedom of speech for extremists; attitudes to justice error; views on state intervention in economy; views on government spending for environmental protection, public health system, the police, education system, defence, pensions, unemployment benefits, culture and arts.<br><br>Attitudes to welfare state and responsibility for jobs, price control, health care, decent standard of living, economic growth, reduction of income differences, support for students, housing supply and protection of environment; attitudes towards public/private partnership in providing services; attitudes towards personal responsibility; poverty attributions; attitudes towards financial penalties for those on benefits; views on who hold political power; attitudes towards surveillance measures of the authorities in case of security challenges; attitudes towards civil rights; interest in politics; political efficacy; attitudes towards children and youth participation; assessment of tax equity with various income groups; attitudes towards tax credits; views about the frequency of tax avoidance; perceived amount of politicians and public officials involved in corruption; how often asked for bribe by public officials.<br><br>Whether one believes referenda are effective; how one voted in the flag referendum; opinions on the need for future referenda; view on becoming a republic; attitude towards legalising cannabis; attitude towards voluntary euthanasia/assisted dying; preference for union jack on the flag; views on having a British head of state.<br><br>Demography<br>Sex; age; nation of birth; ethnicity; citizenship/residency; religion; attendance at religious services; education; current employment status; hours worked weekly; occupation; working for private or public sector or self-employed; if self-employed: number of employees; supervisor function; trade union membership; party vote in 2014; left-right wing scale; access to technology; hours spent on social media; personal and household income; household size; marital status; partner’s employment status partner’s occupation; organisation partner works for.
DOI: 10.6084/m9.figshare.4747393
title: show_bug.cgi_gnomev2.2.xml

description: Reported Bugs for gnome v 2.22.x<br>
DOI: 10.6084/m9.figshare.4747390
title: The Chemlambda collection of simulations

description: These are the html/d3.js outputs of simulations used for the creation of the animations from the original chemlambda collection, which is no longer available. The collection has been salvaged and improved. A big part of it is now available at [1], [1'].<br>The original outcomes of the simulations used are archived here.<br> <br>The archived simulations are all obtained from using the tools at the chemlambda Github repository [2] and molecules (i.e. chemlambda graphs) which are available at the Library of chemlambda molecules [3]. <br><br>I strongly suggest to read carefully the material available at the chemlambda page [2'] and to follow the links from there, to all the repositories and experiments with chemlambda.<br><br>The general (but not 100% used) rule of correspondence between the html outputs and the molecules used is the following: the name of the molecule used for creating file*.html is file.mol. This correspondence is solved automatically in the updated collection. <br><br>Any of the simulations can be seen by opening the respective html file in a browser. It appears that different browsers have different performances, I suggest to use Safari, or Chrome for the best results. <br><br>For convenience, the files d3.min.js and jquery.min.js are also present. You need to download them too and put them in the same folder where the html file(s) is(are) saved.<br><br>The simulations will be used for further references, where they will be grouped into series relevant for different subjects related to chemlambda.<br><br><br><br>[1] https://chemlambda.github.io/collection.html<br>[1'] http://imar.ro/~mbuliga/collection.html<br><br>[2] https://github.com/chorasimilarity/chemlambda-gui/blob/gh-pages/dynamic/README.md<br>[2'] https://chemlambda.github.io/index.html<br><br>[3] https://github.com/chorasimilarity/chemlambda-gui/tree/gh-pages/dynamic/mol<br>
DOI: 10.6084/m9.figshare.4747393.v1
title: show_bug.cgi_gnomev2.2.xml

description: Reported Bugs for gnome v 2.22.x<br>
DOI: 10.6084/m9.figshare.4747402.v1
title: Supplementary datasets manuscript "Accumulation of heme biosynthetic intermediates contributes to the antibacterial action of the metalloid tellurite"

description: Supplementary dataset 1. Chemical genomics of TeO32-. Positive or negative chemical genetic interaction scores represent increased or decreased TeO32- resistance, respectively. Supplementary dataset 2. Single nucleotide polymorphisms found in evolved strains EM40, EM41, and EM2.
DOI: 10.6084/m9.figshare.4747360
title: dataset.sav

description: This is a dyadic and longitudinal dataset with couples who lost a child, which includes the following variables: meaning and coping orientations.
DOI: 10.6084/m9.figshare.4747318
title: 16S Sequences

description: Bacterial 16S sequence data for bacterial communities sampled from plant leaf surfaces at the Montreal IDENT experiment in Ste-Anne de Bellevue.Data collection procedures are described in the paper "Leaf bacterial diversity mediates plant diversity – ecosystem function relationships" by Isabelle Laforest-Lapointe, Alain Paquette, Christian Messier and Steven Kembel (doi: 10.1038/nature22399).The sequences are in the fast format, they have been adapter-trimmed, assembled and filtered for quality.
DOI: 10.6084/m9.figshare.4747327
title: Dataset for: Urban form revisited—Selecting indicators for characterising European cities

description: <pre>Dataset underlying the analysis in: Nina Schwarz, Urban form revisited—Selecting indicators for characterising European cities, Landscape and Urban Planning, Volume 96, Issue 1, 15 May 2010, Pages 29-47, ISSN 0169-2046, http://dx.doi.org/10.1016/j.landurbplan.2010.01.007. <br>It is a combination of two data sources for 231 European cities:<br>- CORINE land cover for computing city size based on land use and landscape metrics for urban form.<br>- Urban Audit for socio-economic indicators describing urban form.<br><br>Copyrights for the underlying datasets:<br>CORINE: ©EEA, Copenhagen, 2007<br>Urban Audit: Eurostat <br></pre>
DOI: 10.6084/m9.figshare.4747318.v1
title: 16S Sequences

description: Bacterial 16S sequence data for bacterial communities sampled from plant leaf surfaces at the Montreal IDENT experiment in Ste-Anne de Bellevue.Data collection procedures are described in the paper "Leaf bacterial diversity mediates plant diversity – ecosystem function relationships" by Isabelle Laforest-Lapointe, Alain Paquette, Christian Messier and Steven Kembel (doi: 10.1038/nature22399).The sequences are in the fast format, they have been adapter-trimmed, assembled and filtered for quality.
DOI: 10.17608/k6.auckland.4747405.v2
title: ISSP2016: Role of Government V

description: The third International Social Survey Programme (ISSP) survey by COMPASS Research Centre at the University of Auckland.Attitudes to compliance with the law; attitudes to various forms of protest against the government; views on freedom of speech for extremists; attitudes to justice error; views on state intervention in economy; views on government spending for environmental protection, public health system, the police, education system, defence, pensions, unemployment benefits, culture and arts.<br><br>Attitudes to welfare state and responsibility for jobs, price control, health care, decent standard of living, economic growth, reduction of income differences, support for students, housing supply and protection of environment; attitudes towards public/private partnership in providing services; attitudes towards personal responsibility; poverty attributions; attitudes towards financial penalties for those on benefits; views on who hold political power; attitudes towards surveillance measures of the authorities in case of security challenges; attitudes towards civil rights; interest in politics; political efficacy; attitudes towards children and youth participation; assessment of tax equity with various income groups; attitudes towards tax credits; views about the frequency of tax avoidance; perceived amount of politicians and public officials involved in corruption; how often asked for bribe by public officials.<br><br>Whether one believes referenda are effective; how one voted in the flag referendum; opinions on the need for future referenda; view on becoming a republic; attitude towards legalising cannabis; attitude towards voluntary euthanasia/assisted dying; preference for union jack on the flag; views on having a British head of state.<br><br>Demography<br>Sex; age; nation of birth; ethnicity; citizenship/residency; religion; attendance at religious services; education; current employment status; hours worked weekly; occupation; working for private or public sector or self-employed; if self-employed: number of employees; supervisor function; trade union membership; party vote in 2014; left-right wing scale; access to technology; hours spent on social media; personal and household income; household size; marital status; partner’s employment status partner’s occupation; organisation partner works for.
DOI: 10.6084/m9.figshare.4747258
title: Gamtooskmz.kmz

description: Way points of studied outcrops in the Gamtoos Basin
DOI: 10.6084/m9.figshare.4747327.v1
title: Dataset for: Urban form revisited—Selecting indicators for characterising European cities

description: <pre>Dataset underlying the analysis in: Nina Schwarz, Urban form revisited—Selecting indicators for characterising European cities, Landscape and Urban Planning, Volume 96, Issue 1, 15 May 2010, Pages 29-47, ISSN 0169-2046, http://dx.doi.org/10.1016/j.landurbplan.2010.01.007. <br>It is a combination of two data sources for 231 European cities:<br>- CORINE land cover for computing city size based on land use and landscape metrics for urban form.<br>- Urban Audit for socio-economic indicators describing urban form.<br><br>Copyrights for the underlying datasets:<br>CORINE: ©EEA, Copenhagen, 2007<br>Urban Audit: Eurostat <br></pre>
DOI: 10.6084/m9.figshare.4747246
title: LOS Colon Cancer 621 cases

description: The data set comes from the University of Medicine and Pharmacy of Craiova, Romania, and concerns the hospitalization period of 621 patients diagnosed with colorectal cancer that underwent surgery between 2007 and 2014. It contains 8 attributes, namely socio-demographic variables (age, sex) and clinical information (operation type, tumor topography, stage, tumor parameter (T), adenopathy parameter (N) and metastases (M)).<br>The independent variable -- the hospitalization period -- is split into three intervals: 1-7 days -- short stay (177 cases), 8-14 days -- medium stay (96 cases), over 14 days -- long stay (95 cases). <br>The "Surgery" attribute values are renamed in the data set for an easier manner of accessing them:one = Ileotransverse-anastomosistwo = Raybard colectomythree = Ileosigmoid anastomosisfour = Segmental colectomyfive = Left hemicolectomysix = Subtotal colectomyseven = Abdominoperineal rectal amputationeight = Hartmann rectosigmoidian resectionnine = Rectal biopsyten = Rectosigmoidian resectioneleven = Loop colostomytwelve = Total colectomythirteen = Right hemicolectomyfourteen = Ileostomyfifteen = Low anterior rectosigmoidian resection (Dixon procedure)<br>A thorough description of the data set can be found in the paper:<br>* Ruxandra Stoean, Catalin Stoean, Adrian Sandita, Daniela Ciobanu, Cristian Mesina, Interpreting Decision Support from Multiple Classifiers for Predicting Length of Stay in Patients with Colorectal Carcinoma, Neural Processing Letters, DOI 10.1007/s11063-017-9585-7, pp.1-17, 2017.<br>If you publish material based on the current database, please refer the paper above within the References.
DOI: 10.6084/m9.figshare.4747243
title: Length of Stay Colon Cancer

description: The data set comes from the University of Medicine and Pharmacy of Craiova, Romania, and concerns the hospitalization period of 368 patients diagnosed with colorectal cancer that underwent surgery between 2012 and 2014. It contains 8 attributes, namely socio-demographic variables (age, sex) and clinical information (operation type, tumor topography, stage, tumor parameter (T), adenopathy parameter (N) and metastases (M)).<br>The independent variable -- the hospitalization period -- is split into three intervals: 1-7 days -- short stay (177 cases), 8-14 days -- medium stay (96 cases), over 14 days -- long stay (95 cases). <br>The "Surgery" attribute values are renamed in the data set for an easier manner of accessing them:one = Ileotransverse-anastomosistwo = Raybard colectomythree = Ileosigmoid anastomosisfour = Segmental colectomyfive = Left hemicolectomysix = Subtotal colectomyseven = Abdominoperineal rectal amputationeight = Hartmann rectosigmoidian resectionnine = Rectal biopsyten = Rectosigmoidian resectioneleven = Loop colostomytwelve = Total colectomythirteen = Right hemicolectomyfourteen = Ileostomyfifteen = Low anterior rectosigmoidian resection (Dixon procedure)<br>A thorough description of the data set can be found in the paper:<br>* Ruxandra Stoean, Catalin Stoean, Adrian Sandita, Daniela Ciobanu, Cristian Mesina, Ensemble of Classifiers for Length of Stay Prediction in Colorectal Cancer, International Work-Conference on Artificial Neural Networks (IWANN 2015), Advances in Computational Intelligence, Lecture Notes in Computer Science, Springer, Volume 9094, Palma de Mallorca, Spain, 10-12 June, pp. 444-457, 2015.<br>If you publish material based on the current database, please refer the paper above within the References.
DOI: 10.6084/m9.figshare.4747258.v1
title: Gamtooskmz.kmz

description: Way points of studied outcrops in the Gamtoos Basin