cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/107451
title: Expendable Probe data collected during research cruise KNOX12RR using a Sippican MK21 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7491629
title: Spatial Statistical Downscaling for Constructing High-Resolution Nature Runs in Global Observing System Simulation Experiments

description: Observing system simulation experiments (OSSEs) have been widely used as a rigorous and cost-effective way to guide development of new observing systems, and to evaluate the performance of new data assimilation algorithms. Nature runs (NRs), which are output from deterministic models, play an essential role in building OSSE systems for global atmospheric processes because they are used both to create synthetic observations at high spatial resolution, and to represent the “true” atmosphere against which the forecasts are verified. However, most NRs are generated at resolutions coarser than actual observations from satellite instruments or predictions from data assimilation algorithms. Our goal is to develop a principled statistical downscaling framework to construct high-resolution NRs via conditional simulation from coarse-resolution numerical model output. We use nonstationary spatial covariance function models that have basis function representations to capture spatial variability. This approach not only explicitly addresses the change-of-support problem, but also allows fast computation with large volumes of numerical model output. We also propose a data-driven algorithm to select the required basis functions adaptively, in order to increase the flexibility of our nonstationary covariance function models. In this article we demonstrate these techniques by downscaling a coarse-resolution physical numerical model output at a native resolution of 1° latitude×1.25° longitude of global surface CO2 concentrations to 655,362 equal-area hexagons.
DOI: 10.6084/m9.figshare.7491635
title: Spatial Signal Detection Using Continuous Shrinkage Priors

description: Motivated by the problem of detecting changes in two-dimensional X-ray diffraction data, we propose a Bayesian spatial model for sparse signal detection in image data. Our model places considerable mass near zero and has heavy tails to reflect the prior belief that the image signal is zero for most pixels and large for an important subset. We show that the spatial prior places mass on nearby locations simultaneously being zero, and also allows for nearby locations to simultaneously be large signals. The form of the prior also facilitates efficient computing for large images. We conduct a simulation study to evaluate the properties of the proposed prior and show that it outperforms other spatial models. We apply our method in the analysis of X-ray diffraction data from a two-dimensional area detector to detect changes in the pattern when the material is exposed to an electric field.
DOI: 10.6084/m9.figshare.7491635.v1
title: Spatial Signal Detection Using Continuous Shrinkage Priors

description: Motivated by the problem of detecting changes in two-dimensional X-ray diffraction data, we propose a Bayesian spatial model for sparse signal detection in image data. Our model places considerable mass near zero and has heavy tails to reflect the prior belief that the image signal is zero for most pixels and large for an important subset. We show that the spatial prior places mass on nearby locations simultaneously being zero, and also allows for nearby locations to simultaneously be large signals. The form of the prior also facilitates efficient computing for large images. We conduct a simulation study to evaluate the properties of the proposed prior and show that it outperforms other spatial models. We apply our method in the analysis of X-ray diffraction data from a two-dimensional area detector to detect changes in the pattern when the material is exposed to an electric field.
DOI: 10.7284/107448
title: GNSS (Global Navigation Satellite System) data collected during research cruise KNOX12RR using a Furuno GP-90D instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7491629.v1
title: Spatial Statistical Downscaling for Constructing High-Resolution Nature Runs in Global Observing System Simulation Experiments

description: Observing system simulation experiments (OSSEs) have been widely used as a rigorous and cost-effective way to guide development of new observing systems, and to evaluate the performance of new data assimilation algorithms. Nature runs (NRs), which are output from deterministic models, play an essential role in building OSSE systems for global atmospheric processes because they are used both to create synthetic observations at high spatial resolution, and to represent the “true” atmosphere against which the forecasts are verified. However, most NRs are generated at resolutions coarser than actual observations from satellite instruments or predictions from data assimilation algorithms. Our goal is to develop a principled statistical downscaling framework to construct high-resolution NRs via conditional simulation from coarse-resolution numerical model output. We use nonstationary spatial covariance function models that have basis function representations to capture spatial variability. This approach not only explicitly addresses the change-of-support problem, but also allows fast computation with large volumes of numerical model output. We also propose a data-driven algorithm to select the required basis functions adaptively, in order to increase the flexibility of our nonstationary covariance function models. In this article we demonstrate these techniques by downscaling a coarse-resolution physical numerical model output at a native resolution of 1° latitude×1.25° longitude of global surface CO2 concentrations to 655,362 equal-area hexagons.
DOI: 10.7284/107449
title: GNSS (Global Navigation Satellite System) data collected during research cruise KNOX12RR using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7491551
title: FW_SRL_S10.mat

description: Fine-wire intramuscular EMG Subject 8 Protocol: Short Residual Limb
DOI: 10.6084/m9.figshare.7491554
title: FW_SRL_S12.mat

description: Fine-wire intramuscular EMG Subject 10 Protocol: Short Residual Limb
DOI: 10.7284/107456
title: Gravimeter data collected during research cruise KNOX12RR using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7491551.v1
title: FW_SRL_S10.mat

description: Fine-wire intramuscular EMG Subject 8 Protocol: Short Residual Limb
DOI: 10.6084/m9.figshare.7491554.v1
title: FW_SRL_S12.mat

description: Fine-wire intramuscular EMG Subject 10 Protocol: Short Residual Limb
DOI: 10.6084/m9.figshare.7491542
title: FW_SRL_S5.mat

description: Fine-wire intramuscular EMG Subject 5 Protocol: Short Residual Limb
DOI: 10.6084/m9.figshare.7491545
title: FW_SRL_S3.mat

description: Fine-wire intramuscular EMG Subject 3 Protocol: Short Residual Limb
DOI: 10.6084/m9.figshare.7491548
title: FW_SRL_S7.mat

description: Fine-wire intramuscular EMG Subject 6 Protocol: Short Residual Limb
DOI: 10.7284/107447
title: Magnetometer data collected during research cruise KNOX12RR using a Marine Magnetics SeaSPY instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7491545.v1
title: FW_SRL_S3.mat

description: Fine-wire intramuscular EMG Subject 3 Protocol: Short Residual Limb
DOI: 10.6084/m9.figshare.7491548.v1
title: FW_SRL_S7.mat

description: Fine-wire intramuscular EMG Subject 6 Protocol: Short Residual Limb
DOI: 10.6084/m9.figshare.7491536
title: FW_LRL_S14.mat

description: Fine-wire intramuscular EMG Subject 12 Protocol: Long Residual Limb
DOI: 10.6084/m9.figshare.7491539
title: FW_SRL_S2.mat

description: Fine-wire intramuscular EMG Subject 2 Protocol: Short Residual Limb
DOI: 10.6084/m9.figshare.7491542.v1
title: FW_SRL_S5.mat

description: Fine-wire intramuscular EMG Subject 5 Protocol: Short Residual Limb
DOI: 10.6084/m9.figshare.7491536.v1
title: FW_LRL_S14.mat

description: Fine-wire intramuscular EMG Subject 12 Protocol: Long Residual Limb
DOI: 10.6084/m9.figshare.7491539.v1
title: FW_SRL_S2.mat

description: Fine-wire intramuscular EMG Subject 2 Protocol: Short Residual Limb
DOI: 10.7284/107450
title: Meteorological Station data collected during research cruise KNOX12RR using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7491527
title: FW_LRL_S9.mat

description: Fine-wire intramuscular EMG Subject 7 Protocol: Long Residual Limb
DOI: 10.6084/m9.figshare.7491530
title: FW_SRL_S1.mat

description: Fine-wire intramuscular EMG Subject 1 Protocol: Short Residual Limb
DOI: 10.6084/m9.figshare.7491530.v1
title: FW_SRL_S1.mat

description: Fine-wire intramuscular EMG Subject 1 Protocol: Short Residual Limb
DOI: 10.6084/m9.figshare.7491524
title: FW_LRL_S6.mat

description: Fine-wire intramuscular EMG Subject 5 Protocol: Long Residual Limb
DOI: 10.7284/107455
title: Multibeam Echosounder data collected during research cruise KNOX12RR using a Kongsberg EM120 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7491521
title: FW_LRL_S13.mat

description: Fine-wire intramuscular EMG Subject 11 Protocol: Long Residual Limb
DOI: 10.6084/m9.figshare.7491524.v1
title: FW_LRL_S6.mat

description: Fine-wire intramuscular EMG Subject 5 Protocol: Long Residual Limb
DOI: 10.6084/m9.figshare.7491515
title: FW_LRL_S4.mat

description: Fine-wire intramuscular EMG Subject 4 Protocol: Long Residual Limb
DOI: 10.7284/107452
title: Winch data collected during research cruise KNOX12RR using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7491515.v1
title: FW_LRL_S4.mat

description: Fine-wire intramuscular EMG Subject 4 Protocol: Long Residual Limb
DOI: 10.6084/m9.figshare.7491521.v1
title: FW_LRL_S13.mat

description: Fine-wire intramuscular EMG Subject 11 Protocol: Long Residual Limb
DOI: 10.6084/m9.figshare.7491350
title: Morphology and postnatal ontogeny of the dentition of Chthonerpeton indistinctum (Gymnophiona: Typhlonectidae): Supplementary material

description: The gross morphology, histology and postnatal ontogeny of the dentition of the viviparous and direct-developing typhlonectid <i>Chthonerpeton indistinctum</i> were described and compared with other caecilian species. C<i>. indistinctum</i> exhibited the typical pedicellated condition present in lissamphibians, with a conical monocuspid crown. Our histological analysis demonstrated that the tissue joining crown and pedicel was formed by two bands (internal and external), whereas the external band circumvented the complete periphery of the tooth junction. Likely this condition was not described for another gymnophionan species. In viviparous and some oviparous caecilians, dentition changes radically during ontogeny. Thus, there is a foetal dentition arranged in multiple rows of teeth (i.e. tooth patch), which is replaced by single tooth rows in neonate or juvenile individuals. Details of dentition in the lower jaw of neonate specimens are firstly reported for <i>C. indistinctum </i>herein, adding another member of Typhlonectidae. In some slightly larger specimens the foetal tooth patch on the lower jaw coexisted with a lingual row of the adult-type teeth, indicating that replacement of foetal dentition in the lower jaw did not take place just after birth. The number of teeth, a character widely employed among caecilian species descriptions, varies during postnatal ontogeny. Hence, we concluded that at least for typhlonectid caecilians, tooth number should not be considered as a character with a strong taxonomic value without considering the intraspecific ontogenetic variation. An extensive survey exploring the relationship between body length and tooth count becomes necessary to test the usefulness of tooth counts in species diagnosis.
DOI: 10.7284/107492
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise KNOX13RR using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7491350.v1
title: Morphology and postnatal ontogeny of the dentition of Chthonerpeton indistinctum (Gymnophiona: Typhlonectidae): Supplementary material

description: The gross morphology, histology and postnatal ontogeny of the dentition of the viviparous and direct-developing typhlonectid <i>Chthonerpeton indistinctum</i> were described and compared with other caecilian species. C<i>. indistinctum</i> exhibited the typical pedicellated condition present in lissamphibians, with a conical monocuspid crown. Our histological analysis demonstrated that the tissue joining crown and pedicel was formed by two bands (internal and external), whereas the external band circumvented the complete periphery of the tooth junction. Likely this condition was not described for another gymnophionan species. In viviparous and some oviparous caecilians, dentition changes radically during ontogeny. Thus, there is a foetal dentition arranged in multiple rows of teeth (i.e. tooth patch), which is replaced by single tooth rows in neonate or juvenile individuals. Details of dentition in the lower jaw of neonate specimens are firstly reported for <i>C. indistinctum </i>herein, adding another member of Typhlonectidae. In some slightly larger specimens the foetal tooth patch on the lower jaw coexisted with a lingual row of the adult-type teeth, indicating that replacement of foetal dentition in the lower jaw did not take place just after birth. The number of teeth, a character widely employed among caecilian species descriptions, varies during postnatal ontogeny. Hence, we concluded that at least for typhlonectid caecilians, tooth number should not be considered as a character with a strong taxonomic value without considering the intraspecific ontogenetic variation. An extensive survey exploring the relationship between body length and tooth count becomes necessary to test the usefulness of tooth counts in species diagnosis.
DOI: 10.7284/107491
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise KNOX13RR using a Sea-Bird SBE-911+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107489
title: Expendable Probe data collected during research cruise KNOX13RR using a Sippican MK21 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7490885
title: Armed and Unarmed.csv

description: The data set consists of 3D Skeletal Joint positions of 25 tracked joints. Study participants were recorded as they walked for a distance of 4.5meters in two scenarios (1) when armed with a ceska pistol concealed and tucked on the right hip (2) when unarmed.<br>The data was collected with an aim to extract gait characteristics that were indicative of a person carrying a concealed firearm tucked on the right hip.<br>
DOI: 10.7284/107486
title: GNSS (Global Navigation Satellite System) data collected during research cruise KNOX13RR using a Furuno GP-90D instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7490879
title: Gene expression study of mitochondrial complex I in schizophrenia and paranoid personality disorder

description: <b>Objectives:</b> The aetiology and molecular mechanisms of schizophrenia (SCZ) and paranoid personality disorder (PPD) are not yet clarified. The present study aimed to assess the role of mitochondrial complex I and cell bioenergetic pathways in the aetiology and characteristics of SCZ and PPD. <b>Methods:</b> mRNA levels of all genomic and mitochondrial genes which encode mitochondrial complex I subunits (44 genes) were assessed in blood in 634 SCZ, 340 PPD patients and 528 non-psychiatric subjects using quantitative real-time PCR, and associated comprehensive psychiatric, neurological and biochemical assessments. <b>Results:</b> Significant expression changes of 18 genes in SCZ patients and 11 genes in PPD patients were detected in mitochondrial complex I. Most of these genes were novel candidate genes for SCZ and PPD. Several correlations between mRNA levels and severity of symptoms, drug response, deficits in attention, working memory, executive functions and brain activities were found. <b>Conclusions:</b> Deregulations of both core and supernumerary subunits of complex I are involved in the aetiology of SCZ and PPD. These deregulations have effects on brain activity as well as disorder characteristics.
DOI: 10.6084/m9.figshare.7490879.v1
title: Gene expression study of mitochondrial complex I in schizophrenia and paranoid personality disorder

description: <b>Objectives:</b> The aetiology and molecular mechanisms of schizophrenia (SCZ) and paranoid personality disorder (PPD) are not yet clarified. The present study aimed to assess the role of mitochondrial complex I and cell bioenergetic pathways in the aetiology and characteristics of SCZ and PPD. <b>Methods:</b> mRNA levels of all genomic and mitochondrial genes which encode mitochondrial complex I subunits (44 genes) were assessed in blood in 634 SCZ, 340 PPD patients and 528 non-psychiatric subjects using quantitative real-time PCR, and associated comprehensive psychiatric, neurological and biochemical assessments. <b>Results:</b> Significant expression changes of 18 genes in SCZ patients and 11 genes in PPD patients were detected in mitochondrial complex I. Most of these genes were novel candidate genes for SCZ and PPD. Several correlations between mRNA levels and severity of symptoms, drug response, deficits in attention, working memory, executive functions and brain activities were found. <b>Conclusions:</b> Deregulations of both core and supernumerary subunits of complex I are involved in the aetiology of SCZ and PPD. These deregulations have effects on brain activity as well as disorder characteristics.
DOI: 10.6084/m9.figshare.7490783
title: RETRACTED ARTICLE: Role of oxidative stress in Retinitis pigmentosa: new involved pathways by an RNA-Seq analysis

description: We, the Editor[s] and Publisher of <i>Cell Cycle</i>, have retracted the following article: Role of oxidative stress in Retinitis pigmentosa: new involved pathways by an RNA-Seq analysis Luigi Donato, Concetta Scimone, Giacomo Nicocia, Rosalia D’Angelo & Antonina Sidoti Pages 84-104 | https://doi.org/10.1080/15384101.2018.1558873 The above article has been retracted as a result of concerns regarding the use of raw data by one of the authors upon which the presented research has been based. After examination and approval from the author concerned, the consensus is that the data was used without consent, and that therefore the article must be retracted. We note that we received, peer-reviewed, accepted, and published the article in good faith based on the purported veracity of these representations and warranties. We have been informed in our decision-making by our policy on publishing ethics and integrity and the COPE guidelines on retractions. The retracted article will remain online to maintain the scholarly record, but it will be digitally watermarked on each page as “Retracted”.
DOI: 10.7284/107487
title: GNSS (Global Navigation Satellite System) data collected during research cruise KNOX13RR using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7490783.v2
title: RETRACTED ARTICLE: Role of oxidative stress in Retinitis pigmentosa: new involved pathways by an RNA-Seq analysis

description: We, the Editor[s] and Publisher of <i>Cell Cycle</i>, have retracted the following article: Role of oxidative stress in Retinitis pigmentosa: new involved pathways by an RNA-Seq analysis Luigi Donato, Concetta Scimone, Giacomo Nicocia, Rosalia D’Angelo & Antonina Sidoti Pages 84-104 | https://doi.org/10.1080/15384101.2018.1558873 The above article has been retracted as a result of concerns regarding the use of raw data by one of the authors upon which the presented research has been based. After examination and approval from the author concerned, the consensus is that the data was used without consent, and that therefore the article must be retracted. We note that we received, peer-reviewed, accepted, and published the article in good faith based on the purported veracity of these representations and warranties. We have been informed in our decision-making by our policy on publishing ethics and integrity and the COPE guidelines on retractions. The retracted article will remain online to maintain the scholarly record, but it will be digitally watermarked on each page as “Retracted”.
DOI: 10.6084/m9.figshare.7490783.v1
title: Role of oxidative stress in Retinitis pigmentosa: new involved pathways by an RNA-Seq analysis

description: Retinitis pigmentosa (RP) is a very heterogeneous inherited ocular disorder group characterized by progressive retinal disruption. Retinal pigment epithelium (RPE) degeneration, due to oxidative stress which arrests the metabolic support to photoreceptors, represents one of the principal causes of RP. Here, the role of oxidative stress in RP onset and progression was analyzed by a comparative whole transcriptome analysis of human RPE cells, treated with 100 µg/ml of oxLDL and untreated, at different time points. Experiment was thrice repeated and performed on Ion Proton<sup>TM</sup> sequencing system. Data analysis, including low quality reads trimming and gene expression quantification, was realized by CLC Genomics Workbench software. The whole analysis highlighted 14 clustered “macro-pathways” and many sub-pathways, classified by selection of 5271 genes showing the highest alteration of expression. Among them, 23 genes were already known to be RP causative ones (15 over-expressed and 8 down-expressed), and their enrichment and intersection analyses highlighted new 77 candidate related genes (49 over-expressed and 28 down-expressed). A final filtering analysis then highlighted 29 proposed candidate genes. This data suggests that many new genes, not yet associated with RP, could influence its etiopathogenesis.
DOI: 10.7284/107494
title: Gravimeter data collected during research cruise KNOX13RR using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107488
title: Meteorological Station data collected during research cruise KNOX13RR using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107493
title: Multibeam Echosounder data collected during research cruise KNOX13RR using a Kongsberg EM120 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition