cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25632429.v1
title: A national longitudinal dataset of skills taught in U.S. higher education curricula

description: Higher education plays a critical role in driving an innovative economy by equipping students with knowledge and skills demanded by the workforce. While researchers and practitioners have developed data systems to track detailed occupational skills, such as those established by the U.S. Department of Labor (DOL), much less effort has been made to document skill development in higher education at a similar granularity.Here, we fill this gap by presenting a longitudinal dataset of skills inferred from over three million course syllabi taught at nearly three thousand U.S. higher education institutions.To construct this dataset, we apply natural language processing to extract from course descriptions detailed workplace activities (DWAs) used by the DOL to describe occupations. We then aggregate these DWAs to create skill profiles for institutions and academic majors. Our dataset offers a large-scale representation of college-educated workers and their role in the economy.To showcase the utility of this dataset, we use it to 1) compare the similarity of skills taught and skills in the workforce according to the US Bureau of Labor Statistics, 2) estimate gender differences in acquired skills based on enrollment data, 3) depict temporal trends in the skills taught in social science curricula, and 4) connect college majors' skill distinctiveness to salary differences of graduates.Overall, this dataset can enable new research on the source of skills in the context of workforce development and provide actionable insights for shaping the future of higher education to meet evolving labor demands especially in the face of new technologies.<b>Citation</b>:The preprint is available here:https://arxiv.org/abs/2404.13163 If you are using the dataset, please use the following citation:<pre>@article{sabet2024national,<br> title={A national longitudinal dataset of skills taught in US higher education curricula},<br> author={Sabet, Alireza Javadian and Bana, Sarah H and Yu, Renzhe and Frank, Morgan R},<br> journal={arXiv preprint arXiv:2404.13163},<br> year={2024}<br>}<br></pre>
DOI: 10.6084/m9.figshare.9989000.v1
title: Raw data for oscillatory analysis, EEG

description: This is the raw data for the part 1 (neural oscillations, exposure) for Fantasmas_EEG project<br>
DOI: 10.6084/m9.figshare.24155409.v1
title: Original MET file

description: This is the met file for subjects 1-100
DOI: 10.6084/m9.figshare.3530954.v1
title: Appendix C. Figures and regression statistics for relationships between total bill lengths and maximum extraction depths of male and female Eulampis jugularis at artificial flowers of increasing curvatures.

description: Figures and regression statistics for relationships between total bill lengths and maximum extraction depths of male and female Eulampis jugularis at artificial flowers of increasing curvatures.
DOI: 10.6084/m9.figshare.12094317.v1
title: Evaluation of olive leaf extract as a growth promoter on the performance, blood biochemical parameters, and caecal microflora of broiler chickens

description: ABSTRACT The objective of the study was to examine the effects of an alcoholic liquid olive leaf extract (OLE) obtained from fresh leaves on the growth performance, carcass weight, caecal microflora, and some plasma variables, such as triglycerides, total cholesterol, high-density lipoprotein (HDL), and low-density lipoprotein (LDL) cholesterol in broiler chickens. A total of 375 one-day-old male broilers (Ross 308) were randomly divided into five treatments with five replicate pens (15 birds each) per treatment. The birds were fed either a basal diet with no supplement (control), with 75 (OLE75), 150 (OLE150), 300 (OLE300), and 600 (OLE600) mg kg−1 oleuropein, provided by 0.66, 1.33, 2.65, and 5.32 g kg−1 of the OLE. The dietary supplementation of OLE linearly increased daily body weight gain (BWG), feed intake (FI), and carcass weight and improved feed conversion ratio (FCR). Although the OLE600 broilers had the highest daily FI among the treatments, there were significant increases in their BWG and improvements in FCR compared with the control, OLE75, and OLE150 birds. The carcass weights of OLE150, OLE300, and OLE600 birds were higher than those of the control group. The OLE600 diet increased the dressing percentage compared with the OLE75, OLE150, and OLE300 diets. The abdominal fat weight and the plasma HDL concentration of the control broilers were lower than those of all OLE birds. All doses of OLE supplementation decreased the caecal E. coli content. A growth-promoting effect is obtained from the dietary supplementation of 600 mg kg−1 oleuropein due to its beneficial effect on growth performance and caecal microflora populations of broilers.
DOI: 10.6084/m9.figshare.23735706.v1
title: data to run tutorials on https://github.com/DendrouLab/panpipes-tutorials

description: subsampled anndata objects for trimodal teaseq dataset
DOI: 10.6084/m9.figshare.25001795.v1
title: Supplementary Material for: Causal Relationship Between Gut Microbiota and Aneurysm: A Mendelian Randomization Study

description: Observational studies have suggested a possible relationship between gut microbiota (GM) and aneurysm development. However, the nature of this association remains unclear due to the inherent limitations of observational research, such as reverse causation and confounding factors. To address this knowledge deficit, this study aimed to investigate and establish a causal link between GM and aneurysm development.
DOI: 10.6084/m9.figshare.5696212.v1
title: Plant species diversity in a Neotropical wetland: patterns of similarity, effects of distance, and altitude

description: ABSTRACT The Brazilian Pantanal is an extensive wetland with heterogeneous habitats, primarily due to the river-floodplain system and plants with differential adaptations and reproductive strategies. Factors such as altitude, distance among plant formations, and flood pulse must be considered to better understand its diversity. Aiming to assess the influence of biogeographic patterns in this system, we analyzed the floristic composition of six areas along the Paraguay River, including residual relieves, verifying the pattern of similarity, and effects of distance and altitude. We recorded 356 species in 87 families, mostly perennial (75%), and some annuals (15%) and pluriannuals (5%). Herbaceous plants were the most represented (48%), followed by arboreal (23%), shrubby (15%) and epiphytic (14%) habits, only 12% being endemic to Brazil. The studied areas showed low floristic similarity, but higher resemblance of species between neighboring areas, and no relation with altitude. The upper Paraguay River is diverse, with high spatial variability of species, predominantly perennial. The river-floodplain connectivity may be a determinant factor in species richness and occurrence of endemic species.
DOI: 10.6084/m9.figshare.12050646.v1
title: Additional file 1 of Mental health problems and associated school interpersonal relationships among adolescents in China: a cross-sectional study

description: Additional file 1: Table S1. The mean scores and SDs of TSRQ and PRS.
DOI: 10.6084/m9.figshare.17011553.v1
title: Supplementary Material for: BAP1 Immunostain Status in Intraocular Biopsy Specimens for Uveal Melanoma Highly Correlates with Other Prognostic Markers

description: <b><i>Introduction:</i></b> Loss of BAP1 protein expression emerged as a negative prognostic marker in uveal melanoma (UM) and has primarily been studied in enucleations. Intraocular biopsy is frequently performed prior to UM globe-conserving therapy. <b><i>Methods:</i></b> We retrospectively evaluated BAP1 immunostaining of UM in 16 biopsies and 8 subsequent enucleations, and results were correlated with the UM-specific gene expression profile (GEP; <i>n</i> = 11), chromosome 3 status by FISH and/or chromosomal microarray (<i>n</i> = 12; 9 also had GEP), and clinical outcomes. <b><i>Results:</i></b> UM involved the choroid in 15 (of 16) cases. Biopsy was performed for prognostication (<i>n</i> = 12) or diagnosis (<i>n</i> = 4). Treatment included brachytherapy (<i>n</i> = 13; 5 followed by enucleation) or enucleation only (<i>n</i> = 3). BAP1 nuclear immunostaining was positive in 9, negative in 4, and equivocal in 3 biopsies. For the 3 equivocal biopsies, BAP1 immunostaining was positive in 2 (of 3) subsequent enucleations. BAP1 immunostaining was concordant between all 5 remaining biopsies and enucleations. BAP1-positive biopsies had disomy 3 (<i>n</i> = 6) or 3p loss (<i>n</i> = 1) and class 1 GEP (<i>n</i> = 6). BAP1-negative biopsies had monosomy 3 (<i>n</i> = 3) and class 2 GEP (<i>n</i> = 2). Median follow-up was 62.5 months (range, 17–150). For BAP1-positive UM patients, 8 were alive (7 without metastatic disease) and 3 had died (1 melanoma-related death). Among BAP1-negative UM patients, 2 were alive (1 with metastatic disease) and 3 had melanoma-related deaths. <b><i>Conclusion:</i></b> BAP1 immunostaining in biopsies highly correlates with results in subsequent enucleations and with well-established UM prognostic markers, representing a potential additional prognostic tool for UM biopsies.
DOI: 10.6084/m9.figshare.12519488.v1
title: Source data for "Defining and predicting transdiagnostic categories of neurodegenerative disease"

description: Source data for Cornblath et al. 2020, "Defining and predicting transdiagnostic categories of neurodegenerative disease."
DOI: 10.6084/m9.figshare.11932743.v1
title: socialApps

description: social apps from google play store used by TNBDroid
DOI: 10.6084/m9.figshare.14279743.v1
title: AN INDEX TO EVALUATE THE ACCEPTANCE OF SPECIALTY COFFEES IN CONSUMER GROUPS

description: ABSTRACT Numerous factors are related to the individual sensory perception of consumers, which makes it impossible to adapt a model that explains their behavior. In this context and given the scarcity of statistical indexes that evaluate preferences for specialty coffees, new statistical methods should be studied. To this end, our study aimed to create an index that measures the acceptance of specialty coffees. The index was built considering the fit of regression models as a function of principal component scores. Validation was done by significance tests, whose probabilities were obtained by bootstrapping, considering the main measures used in diagnosing outliers as weights, with application to real data from different consumer groups. The coffee varieties Acaia and Bourbon were discriminated in relation to altitude. In conclusion, the index was adequate for the analysis and characterization of specialty coffees grown at different altitudes.
DOI: 10.6084/m9.figshare.28443014.v1
title: oxidative enzymes

description: The attached file is the raw data related to the measured levels of oxidative stress enzymes.
DOI: 10.6084/m9.figshare.28279271.v1
title: Fungal spore percentage data from lake surface sediments in the Inner Mongolia steppe and its surrounding areas

description: This file includes fungal spore percentage data from "Modern coprophilous fungal spores and their ecological indication from lakes in the Inner Mongolia steppe and surrounding areas"
DOI: 10.15468/dl.y6a48y
title: Occurrence Download

description: A dataset containing 1790 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Thera britannica (Turner, 1925)"
 ]
}

 The dataset includes 1790 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009496-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.14387630.v2
title: Dataset of estimating urban evapotranspiration at 10m resolution using satellite Sentinel-2 for Beijing Sponge City

description: By applying Sentinel-2-based LAI and land cover classification from FROM-GLC10 to a carbon-water coupling model (PML-V2.1), we for the first time estimate monthly ET at 10m×10m resolution for the Beijing Sponge City.
DOI: 10.6084/m9.figshare.28580993.v1
title: Data_base_cervical_cancer_screening_adherence.xlsx

description: Cervical cancer screening data from Cameroon is included in this dataset.
DOI: 10.6084/m9.figshare.9357083.v2
title: Characterization of novel small RNAs (sRNAs) contributing to the desiccation response of <i>Salmonella enterica</i> serovar Typhimurium

description: Noncoding RNA (ncRNA) modulation of gene expression has now been ubiquitously observed across all domains of life. An increasingly apparent role of ncRNAs is to coordinate changes in gene expressions in response to environmental stress. <i>Salmonella enterica</i>, a common food-born pathogen, is known for its striking ability to survive, adapt, and thrive in various unfavourable environments which makes it a particularly difficult pathogen to eliminate as well as an interesting model in which to study ncRNA contributions to cellular stress response. Mounting evidence now suggests that small RNAs (sRNAs) represent key regulators of <i>Salmonella</i> stress adaptation. Approximately 50–500 nucleotides in length, sRNAs regulate gene expression through complementary base pairing with molecular targets and have recently been suggested to outnumber protein-coding genes in bacteria. In this work, we employ small RNA transcriptome sequencing to characterize changes in the sRNA profiles of <i>Salmonella</i> in response to desiccation. In all, we identify 102 previously annotated sRNAs significantly differentially expressed during desiccation; and excitingly, 71 novel sRNAs likewise differentially expressed. Small transcript northern blotting and qRT-PCRs confirm the identities and expressions of several of our novel sRNAs, and computational analyses indicate the majority are highly conserved and structurally related to characterized sRNAs. Predicted sRNA targets include several proteins necessary for desiccation survival and this, in part, suggests a role for desiccation-regulated sRNAs in this stress response. Furthermore, we find individual knock-outs of two of the novel sRNAs identified herein, either sRNA1320429 or sRNA3981754, significantly impairs the ability of <i>Salmonella</i> to survive desiccation, confirming their involvements (and suggesting the potential involvements of other sRNAs we identify in this work) in the <i>Salmonella</i> response to desiccation.
DOI: 10.6084/m9.figshare.25512187.v1
title: 2023GB007927 [Revision v3]

description: Dataset of the paper <i>Anthropocene North Western Pacific Oceanography Recorded as Seasonal-resolution Radiocarbon in Coral from Kikai Island, Japan</i>
DOI: 10.6084/m9.figshare.23737170.v1
title: Murine intestinal organoid scEU-seq data - Raw

description: AnnData object of scRNA-seq dataset of murine intestinal organoids metabolically labeled and sequenced with scEU-seq. The data has been collected as provided by the original publication in an AnnData file. See here for details. <br> Please cite the original publication: https://doi.org/10.1126/science.aax3072
DOI: 10.6084/m9.figshare.13649603.v1
title: Supplementary Material for: Teenagers and Precision Psychiatry: A Window of Opportunity

description: <b><i>Objective:</i></b> Precision medicine raises hope for translating genetic-based knowledge about psychiatric risks into mental health benefits by motivating health-related, risk-reducing behaviors. Teenagers (ages 14–17) are an important age-group to engage in preventive efforts but, their views about psychiatric genetics are understudied. <b><i>Method:</i></b> An online survey with a nationally representative sample of teenagers (<i>n</i> = 417) was conducted. Participants were randomly assigned to receive 1 of 2 handouts, 1 emphasizing the genetic underpinnings of psychiatric conditions; the other agency-oriented and focusing on gene-environment interactions. Survey questions queried their views about behavioral changes in response to psychiatric genetic risk information and expressed willingness to undertake them. Participants’ decision-making characteristics (i.e., self-efficacy, empowerment, intolerance of uncertainty, and sensation-seeking) were assessed at baseline. <b><i>Results:</i></b> Teenagers strongly valued the information provided and its potential usefulness for their mental health. Information about psychiatric genetics alone impacted views about the causes of mental illness. Contrary to our hypothesis, the type of handout did not impact participants’ expressed willingness to make behavioral changes to reduce their risk of developing a psychiatric condition, but their sense of empowerment played a key role in their responses. <b><i>Conclusion:</i></b> Educating teenagers about gene-environment interactions may help facilitate the translational efforts of precision psychiatry. Research with teenagers across racial/ethnic groups, especially those with family histories, is needed to better understand the factors that impact teenagers’ empowerment in psychiatric genomic settings and to identify measures, including the best enablers of empowerment (e.g., educators, parents), which would allow them to reap the benefits of precision psychiatry.
DOI: 10.6084/m9.figshare.5241271.v1
title: Erratum: The Turkish Hereditary Angioedema Pilot Study (TURHAPS): The First Turkish Series of Hereditary Angioedema

description: <i>Background:</i> No published data presently exist concerning hereditary angioedema (HAE) in Turkey. The aim of the study was to initiate a preliminary multicentric evaluation about HAE and to determine the genetic properties of Turkish patients. <i>Methods:</i> Based on records drawn from four medical centers we identified a total of 70 subjects, belonging to 60 unrelated families, fulfilling clinical and laboratory criteria for diagnosis of HAE with C1 inhibitor deficiency. Ten type I patients, and their first-degree relatives, underwent genetic analysis for HAE. <i>Results:</i> The majority of patients were female (60%), the mean age was 37.7 ± 14.1 years. The mean age at the time of first angioedema symptom was 12.5 ± 9.2 years. Mean time lag between first symptom and diagnosis was 26 ± 14.4 years. All but 3 subjects had HAE type I. Family history of angioedema was present in 75.7% of the cases. Cutaneous swelling was reported by 87.1% of the patients, facial edema by 65%, abdominal symptoms by 74.3% and approximately one half (55.7%) had experienced one or more laryngeal attack. Genetic analysis of 10 families demonstrated that 5 carried a mutation that had never been previously described. <i>Conclusion:</i> We found that the clinical features of Turkish HAE patients were consistent with previously described patterns of this rare disease. The most noteworthy feature identified in the study was a significantly long duration between the first symptom appearance and final diagnosis. Our detection of different mutations in 10 patients confirms the allelic heterogeneity of the disease.
DOI: 10.6084/m9.figshare.14350226.v1
title: Supplementary Material for: Chitin, Chitin Oligosaccharide, and Chitin Disaccharide Metabolism of <b><i>Escherichia coli</i></b> Revisited: Reassignment of the Roles of ChiA, ChbR, ChbF, and ChbG

description: <i>Escherichia coli</i> is unable to grow on polymeric and oligomeric chitin, but grows on chitin disaccharide (GlcNAc-GlcNAc; <i>N,N</i>′-diacetylchitobiose) and chitin trisaccharide (GlcNAc-GlcNAc-GlcNAc; <i>N,N</i>′<i>,N</i>′′-triacetylchitotriose) via expression of the <i>chb</i> operon (<i>chbBCARFG</i>). The phosphotransferase system (PTS) transporter ChbBCA facilitates transport of both saccharides across the inner membrane and their concomitant phosphorylation at the non-reducing end, intracellularly yielding GlcNAc 6-phosphate-GlcNAc (GlcNAc6P-GlcNAc) and GlcNAc6P-GlcNAc-GlcNAc, respectively. We revisited the intracellular catabolism of the PTS products, thereby correcting the reported functions of the 6-phospho-glycosidase ChbF, the monodeacetylase ChbG, and the transcriptional regulator ChbR. Intracellular accumulation of glucosamine 6P-GlcNAc (GlcN6P-GlcNAc) and GlcN6P-GlcNAc-GlcNAc in a <i>chbF</i> mutant unraveled a role for ChbG as a monodeacetylase that removes the <i>N-</i>acetyl group at the non-reducing end. Consequently, GlcN6P- but not GlcNAc6P-containing saccharides likely function as coactivators of ChbR. Furthermore, ChbF removed the GlcN6P from the non-reducing terminus of the former saccharides, thereby degrading the inducers of the <i>chb</i> operon and facilitating growth on the saccharides. Consequently, ChbF was unable to hydrolyze GlcNAc6P-residues from the non-reducing end, contrary to previous assumptions but in agreement with structural modeling data and with the unusual catalytic mechanism of the family 4 of glycosidases, to which ChbF belongs. We also refuted the assumption that ChiA is a bifunctional endochitinase/lysozyme ChiA, and show that it is unable to degrade peptidoglycans but acts as a bona fide chitinase in vitro and in vivo, enabling growth of <i>E. coli</i> on chitin oligosaccharides when ectopically expressed. Overall, this study revises our understanding of the chitin, chitin oligosaccharide, and chitin disaccharide metabolism of <i>E. coli</i>.
DOI: 10.6084/m9.figshare.28781837.v1
title: Dataset_BMC_IPV_2019

description: This dataset was derived from a public national demographic and health survey. It has been processed and filtered to include only the relevant records and variables for the analysis of factors associated with intimate partner violence among women of reproductive age. The original dataset is publicly available through the corresponding official sources. Use of this dataset should be considered in the context of the associated manuscript, where the methodology and variable selection are fully detailed.
DOI: 10.6084/m9.figshare.12110619.v1
title: ChemFluor

description: We establish a machine learning-based method to predict emission/absorption wavelength and PLQY of organic fluorescent materials.A platform has been establised for experimenters to use, as well as used for potential high-throughput screening.<br>The ChemFluor.zip is the platform based on python, which contain trained models, can be used for the prediction directly.Fingerprints_for_prediction.zip is the fingerprints used in our work.Materials_Real-World_Problem.zip is the molecules collected from recent published work and TD-DFT benchmark studies, which can be seen as real world problem. The molecules are stored in the form of SMILES.<br>Alldata_SMILES.xlsx contains all the molecules in our dataset as well as the references. <br>