cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3467753.v1
title: Subtidal sea star species density 2014 -2015 San Juan Islands

description: Csv containing the results per species per transect in terms of density of subtidal species. Used in the bayesian model of the paper 'Transboundary devastating effects of SSWD in subtidal species.
DOI: 10.3535/14t-yxn-kvm
title: Magnesite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cyk-rq5-z9h
title: Gypsum

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7067192.v1
title: Time Series Data - Kinematics, Forces, Energetics, EMG

description: This dataset was constructed using Matlab 2017b.<br><br>The data are organised into three structures: 'Down', 'Level', and 'Up' which contain the data for the corresponding condition of stepping downwards, level stepping, and stepping upwards.<br>At the deepest level of each structure, the data are organized into matrices where each row corresponds to the stance phase data of a single step for a single subject. The total number of rows is equal to the number of total steps across all subjects for that condition. The number of columns represents the average length of stance phase for that condition across all participants at a down-sampled rate of 150 Hz.<br>There are two exceptions to this format:1) The field 'StanceTime' is an array in which each element is the duration of stance time for each stance time in seconds.2) The field 'Subject' is an integer array where each element corresponds to the subject from which the data come from.<br>Moment data are normalized by the weight of the participant and is in units of Nm/kg.Force data are normalized by the weight of the participant and is in units of Nm/kg.Power data are normalized by the weight of the participant and is in units of W/kg.EMG data are normalized on a range of 0 to 1 based on the minimum and maximum EMG recorded during the stance phase of all conditions on a per-participant basis.Speed data are in units of m/s.Length data are in units of m.
DOI: 10.3535/9lt-fjn-b47
title: Kyanite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/c56-g9m-vm8
title: obolus-phosphorite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tcv-whg-prp
title: Anthophyllite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.15019593.v3
title: Madzivanzira et al. 2021 Fish and Macrophytes consumption.xlsx

description: This data supports laboratory experiments to determine potential ecological and socioeconomic impacts conferred by the crayfish species: <i>Cherax quadricarinatus</i> and <i>Procambarus clarkii</i> relative to a functionally similar native analogue, the river crab <i>Potamonautes perlatus</i>, on two static but different resources. The data contains the individual consumption rates of macrophyte and scavenging rates on fish by the three decapods. The data also contains the morphometric measurements of crayfish and crabs used for the experiments.
DOI: 10.6084/m9.figshare.20335158.v2
title: Parlato and Mott_Tadpole Predatory Effects Project_Full Dataset

description: This dataset includes wood frog tadpole abundance, morphology, growth, and diet data, freshwater invertebrate abundance data by taxon, and recordings of relevant abiotic environmental variables. Data are divided into separate Excel sheets. Data is based off field collections conducted in eastern and central Kentucky in February - May of 2021.
DOI: 10.6084/m9.figshare.21791750.v1
title: Supplemental Table 1

description: Metabarcoding markers and gene regions, references, primer sequences, approximate target gene region length, and PCR parameters.
DOI: 10.6084/m9.figshare.3527060.v1
title: Appendix C. Functional forms and parameters of dispersal kernels.

description: Functional forms and parameters of dispersal kernels.
DOI: 10.6084/m9.figshare.9899132.v1
title: Material suplementario del artículo "Evaluación de la variación espacio-temporal de la respuesta espectral en manglares de La Habana, Cuba, a través de sensores remotos"

description: Material suplementario. Assessment of the spatial and temporal variations in spectral response in mangroves of Havana, Cuba, by remote sensing. Introduction: Mangrove are one of the most important forest types because its ecosystem services and ecological roles. They represent 5% of the emerged land of Cuba. There are no previous studies describing spectral vegetation indexes variations by remote sensing in Cuban mangroves, but these variables can be used as indicators of the conservation status of the ecosystem and sustain national wide assessments. Objetive: in the current paper we describe spatial and temporal variations in two spectral vegetation indexes in four near-city mangroves at Havana, Cuba and compare them to a natural control site. Methods: Study was conducted in localities named Bajo de Santa Ana, Cojimar, Rincon de Guanabo and El Cobre – Itabo lagoon and as control site was selected northern Zapata swamp. By using Climate Engine platform we extract, from 2460 Landsat satellite images, mean values of spectral indexes NDVI and EVI in 5 parcels per locality, since 1984 to 2019. Variables were statistically compared among localities and global trend was described. Results: We detect geographic differences in both indexes, which can be related with structural properties and conservation degree of mangroves in each locality. Global trend of indexes was to increase, but differently among localities. Slighter changes appear in control site and, among near city mangroves, in Rincon de Guanabo and Cojimar. The ordering of localities from spectral variables was consistent with the ranking in general conservation degree. There is a need of promoting studies using remote sensors at this forest types and to generate strong and reliable indicators that can sustain future researches and monitoring schemes in Caribbean mangroves.<br>
DOI: 10.3535/24e-dyb-9fx
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pge-zym-5l2
title: Pyrite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7949375.v1
title: gVCF_NA18564

description: 1000 Genomes gVCF mapped to hs37d5 for NA18564. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.3535/0ad-4b4-nhz
title: Kaolinite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kwn-1vs-awb
title: Nephrite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27991232.v3
title: <b>Intrinsic and extrinsic factors affecting the evolution of virulence in the HIV-associated opportunistic human fungal pathogen </b><b><i>Cryptococcus neoformans</i></b>

description: The fungus <i>Cryptococcus neoformans</i> is considered the leading cause of mortality in immunocompromised patients. While extensive research has unveiled the molecular epidemiology of <i>Cryptococcus neoformans</i>, the influence of genetic and environmental factors on genotype-phenotype correlations remains poorly understood. Specifically, it remains unclear whether the genetic and environmental variability observed across isolates from diverse sources has significant implications for the pathogen's virulence. In this study, we analyzed 105 Chinese <i>C. neoformans </i>isolates, including 54 from HIV-infected patients, 44 from HIV-uninfected individuals and 7 from a natural environment. Multilocus sequence typing (MLST) revealed that sequence type (ST) 5 predominates across all clinical isolates; however, genotypic diversity was notably higher in isolates from HIV-uninfected individuals and the natural environment, whereas HIV-infected isolates exhibited restricted genetic variation. Furthermore, isolates from HIV-uninfected individuals exhibited significantly enhanced virulence traits, including elevated capsule production, increased melanin production, improved survival in human cerebrospinal fluid (CSF), reduced phagocytic uptake, and higher mortality in both <i>Galleria mellonella</i> and murine models of cryptococcosis. Importantly, these pathogenic phenotypes were correlated with CD4<sup>+</sup> T cell counts, highlighting the critical role of host immunity in shaping <i>C. neoformans</i> virulence. Whole-genome sequencing and genome-wide association studies (GWAS) further revealed that variations in genes involved in carbohydrate metabolism, such as <i>CDA3</i> and<i> GPD1</i>, may drive host-specific virulence evolution. Our findings provide compelling evidence for a genotype-phenotype correlation, demonstrating that both genetic and environmental factors shape the virulence of <i>C. neoformans</i>, with significant implications for understanding host-pathogen interactions and guiding therapeutic strategies.<br>
DOI: 10.3535/8jz-7b5-j9x
title: Lasnamäe building limestone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28524035.v1
title: Supplementary Material 01

description: Criterion cutoff values of the eight biomarkers of the allostatic load index amongst 31 Marine Officer Candidates
DOI: 10.3535/e6e-na3-wsc
title: Bolbochasmops

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lgp-c4s-j8r
title: Bolbochasmops

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5wl-lzm-xfv
title: †Lichidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wnv-52p-s92
title: Neoasaphus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.17004719.v1
title: Mathematica notebook from A convenient formulation of Sadowsky's model for elastic ribbons

description: Code for computing the boundary value problems
DOI: 10.3535/9hy-t6y-ngy
title: Bolbochasmops

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/g19-915-7bh
title: Chasmopsinae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26044054.v1
title: Main Figure 4

description: FIG4_TCGA_DESEq: Differential expressed gene analysis between TCGA LUAD normal vs tumor. Positive log2 foldchange represents upregulation in tumor over normalFIG4_TCGA_LUAD_histone: Log2 TPM values for H3K4me1 or H3K4me3 histone eraser and writer proteins coded genes for TCGA-LUADFIG4_HSAEC_A549: Log2 TPM values for HSAEC cell line and A549 cell linesFIG4_organoid: Log2 TPM values of three ERVK-7 transcripts for tumor organoid and normal organoid.FIG4_psc_day0_15_35: TPM values of ERVK-7.long transcript for PSC at day 0, day 15, and day 35.
DOI: 10.3535/4jf-fr5-8dy
title: Chasmops

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/f8x-shx-288
title: Bolbochasmops

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.2998978.v2
title: Barriers, pathways and processes for uptake, translocation and accumulation of nanomaterials in plants – Critical review

description: Uptake, transport and toxicity of engineered nanomaterials (ENMs) into plant cells are complex processes that are currently still not well understood. Parts of this problem are the multifaceted plant anatomy, and analytical challenges to visualize and quantify ENMs in plants. We critically reviewed the currently known ENM uptake, translocation, and accumulation processes in plants. A vast number of studies showed uptake, clogging, or translocation in the apoplast of plants, most notably of nanoparticles with diameters much larger than the commonly assumed size exclusion limit of the cell walls of ∼5–20 nm. Plants that tended to translocate less ENMs were those with low transpiration, drought-tolerance, tough cell wall architecture, and tall growth. In the absence of toxicity, accumulation was often linearly proportional to exposure concentration. Further important factors strongly affecting ENM internalization are the cell wall composition, mucilage, symbiotic microorganisms (mycorrhiza), the absence of a cuticle (submerged plants) and stomata aperture. Mostly unexplored are the roles of root hairs, leaf repellency, pit membrane porosity, xylem segmentation, wounding, lateral roots, nodes, the Casparian band, hydathodes, lenticels and trichomes. The next steps towards a realistic risk assessment of nanoparticles in plants are to measure ENM uptake rates, the size exclusion limit of the apoplast and to unravel plant physiological features favoring uptake.
DOI: 10.3535/vm3-w0e-32p
title: Bolbochasmops bucculentus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w3c-6gh-h77
title: Neoasaphus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12355046.v1
title: Small Intestinal Neuroendocrine Tumor (scRNA-seq)

description: !0x genomic single cell sequencing of human small intestinal neurodenocrine tumor sample. <br>
DOI: 10.6084/m9.figshare.705153.v1
title: Data showing positive regulation of Wnt/β-catenin signal transduction by FAM129B siRNA using transcriptional reporter assay, target gene expression, and apoptosis assay

description: Data for Figure 2b. Measured β-catenin dependent firefly: constitutive renilla ratios for HT1080, A375, and A2058 reporter cells treated with the indicated conditions. Data for Figure 2c: Quantitative RT-PCR of β-catenin dependent Axin2 mRNA and housekeeping actin mRNA for HT1080, A375, and A2058 cells treated with the indicated conditions. Data for Figure 3a. Measured β-catenin dependent firefly: constitutive renilla ratios for A375 reporter cells treated with a dose curve of WNT3A or a single dose of WNT3A. Data for Figure 3b. Measured NFκB dependent firefly: constitutive renilla ratios for A375 reporter cells treated with a dose curve of TNFalpha or a single dose of TNFα . Data for Figure 4b. Quantitation of DAPI and TUNEL positive nuclei from A375 cells treated with WNT3A, PLX4720, and the control, FAM129B, or CTNNB1 siRNA.
DOI: 10.3535/64r-8fg-6gb
title: Neoasaphus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vaw-vet-sya
title: Bolbochasmops bucculentus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22801796.v1
title: Data file for F1000

description: The uploaded data were the raw data and statistical analysis.
DOI: 10.3535/3qb-5ae-2qv
title: Chasmopsinae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/x5y-cf5-l2a
title: Bolbochasmops bucculentus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.10248713.v1
title: Dataset for PeerJ rhino monitoring paper

description: This dataset is a collection of variables, morphometrics, derived from rhino footprints using JMP software from SAS. The morphometrics are different combinations of lengths, angles and areas. Each row describes the variables from one footprint, and for each animal trail several footprints are collected to describe the characteristics that make the footprints from that animal unique
DOI: 10.6084/m9.figshare.c.3669967_d3.v1
title: MOESM5 of Effects of Plasmodium falciparum infection on umbilical artery resistance and intrafetal blood flow distribution: a Doppler ultrasound study from Papua New Guinea

description: Additional file 5. Associations of recent malaria infection with Doppler indices. A total of 533 malaria tests preceded the Doppler scan by no more than 6Â weeks and were thus considered â  recentâ  . In this category, 17 were positive for P. falciparum with either method (13 by qPCR; 11 by LM) and two were positive for P. vivax, by qPCR. Of these, seven infections were sub-microscopic. These data are not shown in the main text as the numbers of recent malaria episodes were too low to confidently perform statistical analyses.
DOI: 10.3535/0ly-gsw-z22
title: †Estoniops maennili Jaanusson & Ramsköld, 1993

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tsw-ft4-3h8
title: †Estoniops maennili Jaanusson & Ramsköld, 1993

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.4312091.v1
title: Dataset for the paper "On the neural substrates of the disposition effect and return performance"

description: Dataset for the paper "On the neural substrates of the disposition effect and return performance"
DOI: 10.6084/m9.figshare.6199163.v1
title: acabral_185-194.csv

description: São apresentados dados (em tabela) sobre a flora de um remanescente florestal no estado de São Paulo, no Parque Ecológico do Perequê. Os dados foram obtidos através de uma expedição de campo do Laboratório de Sistemática da Universidade de São Paulo. A tabela fornece dados relacionados aos dez espécimes coletados ao longo da trilha às margens do rio do Ouro.<br>
DOI: 10.3535/j32-frz-7zw
title: †Pterygometopidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jcz-tf3-7g5
title: †Proetida

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.5767017.v1
title: freebase-rdf-latest-pageRank.hdt

description: This datasets contains the PageRank scores computed over the RDF graph using PageRankRDF (https://github.com/WDAqua/PageRankRDF) of Freebase (http://freebase.com/) in HDT format (http://www.rdfhdt.org).
DOI: 10.3535/aqw-q83-2ma
title: †Stenopareia glaber (Kjerulf, 1865)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/p1t-ytc-7tp
title: Atractopyge

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24543217.v1
title: Bathymetric Surfaces - Bugio Area

description: DEM files representing the bathymetric surfaces in a regular grid of 5 x 5 m and a surface coverage of 16.3 km2 for the Bugio Area of analysis.
DOI: 10.6084/m9.figshare.27175854.v1
title: Below ground biomass

description: Below ground biomass from 2017 to 2022
DOI: 10.6084/m9.figshare.6175796.v1
title: Supplementary material for the manuscript "Flexibility in the timing of avian egg-laying in relation to climate"

description: · Appendix S1 – Names of institutions and persons associated with the collection or maintenance of breeding observations. · Appendix S2 – Table of 146,009 occurrence records which includes the biome, observed 30-day T<sub>min</sub>, T<sub>max</sub>, and precipitation, and 2-year average T<sub>min</sub>, T<sub>max</sub>, and precipitation. · Appendix S3 – Species level climatic averages and results from paired <i>t</i>-tests.
DOI: 10.6084/m9.figshare.7649450.v1
title: DGF_before_filtering

description: Digital Genomic Footrpints before correction for DNAseI cutting bias
DOI: 10.3535/6pe-ckg-4lb
title: †Conolichas deflexus (Schmidt, 1854)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.5868699.v1
title: Neighbor tolerance, not suppression, provides competitive advantage to non-native plants

description: High competitive ability has often been invoked as a key determinant of invasion success and ecological impacts of non-native plants. Yet our understanding of the strategies that non-natives use to gain competitive dominance remains limited. Particularly, it is unknown whether the two non-mutually exclusive competitive strategies, neighbor suppression and neighbor tolerance, are equally important for the competitive advantage of non-native plants. Here, we analyze data from 192 peer-reviewed studies on pairwise plant competition within a Bayesian multilevel meta-analytic framework and show that non-native plants outperform their native counterparts due to high tolerance of competition, as opposed to strong suppressive ability. Competitive tolerance ability of non-native plants was driven by neighbor's origin and was expressed in response to a heterospecific native but not heterospecific non-native neighbor. In contrast to natives, non-native species were not more suppressed by hetero- vs. conspecific neighbors, which was partially due to higher intensity of intraspecific competition among non-natives. Heterogeneity in the data was primarily associated with methodological differences among studies and not with phylogenetic relatedness among species. Altogether, our synthesis demonstrates that non-native plants are competitively distinct from native plants and challenges the common notion that neighbor suppression is the primary strategy for plant invasion success.
DOI: 10.3535/18g-0m3-rha
title: †Toxochasmops (Schmidtops) maximus Schmidt, 1881

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9rc-z1y-n7k
title: Conolichas

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19299467.v1
title: Supplementary Materials

description: Supplementary materials for the "Adventure and Quiz Learning Game Based on a Virtual Tour of a Video Game Museum" article.
DOI: 10.3535/xqg-0ty-x2r
title: †Pterygometopidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xyl-r04-qhm
title: †Keilapyge laevigatus (Schmidt, 1881)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24591882.v1
title: Trajectories of schools of <i>Hemigrammus rhodostomus </i>under various confinement densities conditions

description: Confinement-driven state transition and bistability in schooling fishAbstractThis study explores the collective behavior of schooling fish, under controlled experimental conditions. We demonstrate a continuous state transition in the school behavioural state controlled by confinement density, i.e the number of individuals in a group per unit area of available space. The school exhibits a bistable state, alternating between a polarized state (aligned motion) and a milling state (vortex-like rotation). The transition dynamics are captured by a two-state Markov process, revealing that confinement density influences the stability of each state and the statistics of state transition times. These findings emphasize the crucial role of confinement in shaping collective behavior in moving animal groups, providing valuable insights for active matter models of confined agents and contributing to our understanding of how environmental factors influence complex biological systems.Data repositoryThis repository contains :The raw experimental data (15 min recordings of schooling fish) with name of the form YYYYMMDD_nnA table "exp_table.csv" to link an ID (of the form MMDD_nn) to a given set of experimental parameters (namely a pair of Available swimming surface area <i>S</i>, Number of fish in the school <i>N</i>.)The tracking files with names of the form YYYYMMDD_nn_tracking.csv
DOI: 10.17632/hvgx8rgdbg
title: IPILIMUMABE

description: TABELA IPI RETRATAMENTO
DOI: 10.3535/j9q-e6g-1bm
title: Spathacalymene

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.