cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/e111743v2-84560
title: Data and Code for: Are Ideas Getting Harder to Find?

description: Long-run growth in many models is the product of two terms: the effective number of researchers and their research productivity. We present evidence from various industries, products, and firms showing that research effort is rising substantially while research productivity is declining sharply. A good example is Moore's Law. The number of researchers required today to achieve the famous doubling of computer chip density is more than 18 times larger than the number required in the early 1970s. More generally, everywhere we look we find that ideas --- and the exponential growth they imply --- are getting harder to find.
DOI: 10.6084/m9.figshare.14246294.v3
title: Supplemental material.docx

description: Dynamic changes in rumen fermentation parameters in cows of the donor-recipient (DR) and self-recipient (SR) groups following rumen content transplantation.<br>Spearman correlation coefficients between the top 10 transplantation sensitive operational taxonomic units (OTU) and rumen fermentation following rumen content transplantation.<br><br>Diurnal variation of rumen pH between the conventional (CON) and high-grain (HG) diet groups.<br>
DOI: 10.6084/m9.figshare.14217242
title: Additional file 21: Table S7

description: List of territory-specific genes in the silk gland.
DOI: 10.6084/m9.figshare.14217242.v1
title: Additional file 20: Table S6

description: List of territory-specific genes in the silk gland.
DOI: 10.5281/zenodo.4709798
title: Dataset : Rationality and cognitive bias in great ape economic decision-making

description: This repository contains all files that were used for the analysis we ran in "Rationality and cognitive bias in great ape economic decision-making". For each experiment ('single cup' design, ie. Exp1, and 'multiple cup' design, ie. Exp2) one file (Experiment_Data.csv) gives the raw results of subjects' choices for each condition, and one file (Experiment_Discontent.csv) gives the results of the discontent analysis (for the conditions where the risky option was largely baited).
description: non-OpenAIRE funding : Startup-funding of Taipei Medical University grant 108-6402-004-112 (Christoph D. Dahl)
DOI: 10.5281/zenodo.4709797
title: Dataset : Rationality and cognitive bias in great ape economic decision-making

description: This repository contains all files that were used for the analysis we ran in "Rationality and cognitive bias in great ape economic decision-making". For each experiment ('single cup' design, ie. Exp1, and 'multiple cup' design, ie. Exp2) one file (Experiment_Data.csv) gives the raw results of subjects' choices for each condition, and one file (Experiment_Discontent.csv) gives the results of the discontent analysis (for the conditions where the risky option was largely baited).
description: non-OpenAIRE funding : Startup-funding of Taipei Medical University grant 108-6402-004-112 (Christoph D. Dahl)
DOI: 10.23729/a00cd839-1861-4551-948f-cabfa138fd4d
title: NPL Surface Sample preview

description: Sample manufactured by National Physical Laboratory by additive manufacturing. The goal of the sample and the measurements was to study the ability of the XCT instrument in measuring surface roughness. Studies were part of the AdvanCT project at VTT MIKES. Preview of PAS-dataset doi:10.23729/df883f74-ab5d-438a-94e2-a3f66f3d63c5
DOI: 10.6084/m9.figshare.14217272
title: Additional file 23: Table S8

description: List of tissue-specific TF genes.
DOI: 10.18430/m37mh7
title: X-ray diffraction data for the crystal structure of NAD kinase from Pseudomonas aeruginosa PAO1 (7MH7)
DOI: 10.6084/m9.figshare.14217272.v2
title: Additional file 23: Table S8

description: List of tissue-specific TF genes.
DOI: 10.6084/m9.figshare.14217272.v1
title: Additional file 22: Table S7

description: List of tissue-specific TF genes.
DOI: 10.5517/ccdc.csd.cc20gdrn
title: CCDC 1860891: Experimental Crystal Structure Determination

description: Related Article: Lipiao Bao, Ying Li, Pengyuan Yu, Wangqiang Shen, Peng Jin, Xing Lu|2020|Angew.Chem.,Int.Ed.|59|5259|doi:10.1002/anie.201910743
DOI: 10.5517/ccdc.csd.cc20gdsp
title: CCDC 1860892: Experimental Crystal Structure Determination

description: Related Article: Lipiao Bao, Ying Li, Pengyuan Yu, Wangqiang Shen, Peng Jin, Xing Lu|2020|Angew.Chem.,Int.Ed.|59|5259|doi:10.1002/anie.201910743
DOI: 10.5517/ccdc.csd.cc20gfrp
title: CCDC 1860922: Experimental Crystal Structure Determination

description: Related Article: Lipiao Bao, Ying Li, Pengyuan Yu, Wangqiang Shen, Peng Jin, Xing Lu|2020|Angew.Chem.,Int.Ed.|59|5259|doi:10.1002/anie.201910743
DOI: 10.5517/ccdc.csd.cc21gf43
title: CCDC 1890694: Experimental Crystal Structure Determination

description: Related Article: Lipiao Bao, Ying Li, Pengyuan Yu, Wangqiang Shen, Peng Jin, Xing Lu|2020|Angew.Chem.,Int.Ed.|59|5259|doi:10.1002/anie.201910743
DOI: 10.6084/m9.figshare.14217296.v2
title: Additional file 23: Table S8

description: List of territory-specific TF genes in the silk gland.
DOI: 10.15129/e24e4452-fb5a-4608-a8d9-3de4d401f239
title: Data for: "Structurally integrated transmitter beacon for underwater wireless optical communications in multiple ocean types"

description: Data sets for abstract 2021-TPC-0386 titled "Structurally integrated transmitter beacon for underwater wireless optical communications in multiple ocean types", submitted to ISOPE 2021 conference. Tabulated data shown in abstract figures 3, 5 and 6 are provided in Microsoft Excel format.
DOI: 10.15468/9keyy3
title: Notes on the earthworm species, Metaphire anomala (Michaelsen, 1907) (Clitellata, Megascolecidae) in Southern Vietnam, with descriptions of two new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Nguyen, Tung T., Lam, Dang H., Nguyen, Anh D. (2021): Notes on the earthworm species, Metaphire anomala (Michaelsen, 1907) (Clitellata, Megascolecidae) in Southern Vietnam, with descriptions of two new species. European Journal of Taxonomy 746: 94-111, DOI: https://doi.org/10.5852/ejt.2021.746.1321, URL: http://dx.doi.org/10.5852/ejt.2021.746.1321
DOI: 10.6084/m9.figshare.14465562
title: erythroid_lineage.h5ad

description: Perspectives in RNA velocity<br>scRNA-seq dataset of erythroid lineage in mouse gastrulation, containing spliced and unspliced reads, from https://doi.org/10.1101/2020.12.21.423773<br>
DOI: 10.6084/m9.figshare.14465562.v2
title: erythroid_lineage.h5ad

description: Perspectives in RNA velocity<br>scRNA-seq dataset of erythroid lineage in mouse gastrulation, containing spliced and unspliced reads, from https://doi.org/10.1101/2020.12.21.423773<br>
DOI: 10.6084/m9.figshare.14465562.v1
title: Gastrulation erythroid lineage

description: Perspectives in RNA velocity
DOI: 10.6084/m9.figshare.14465568
title: pbmc68k.h5ad

description: Perspectives in RNA velocity<br>scRNA-seq dataset of 68k PBMCs, containing spliced and unspliced reads, from https://doi.org/10.1038/ncomms14049
DOI: 10.6084/m9.figshare.14465559
title: human_cd34_bone_marrow.h5ad

description: Perspectives in RNA velocity<br>scRNA-seq dataset of human bone marrow, containing spliced and unspliced reads, from https://doi.org/10.1038/s41587-019-0068-4
DOI: 10.5281/zenodo.4678936
title: Public RNA-seq count matrices and sample metadata from the eQTL Catalogue

description: RNA-seq count matrices and sample metadata *.tsv - sample metadata files<br> *_merged_counts_pseudo.tsv.gz - RNA-seq count matrices<br>
DOI: 10.5281/zenodo.4678935
title: Public RNA-seq count matrices and sample metadata from the eQTL Catalogue

description: RNA-seq count matrices and sample metadata *.tsv - sample metadata files<br> *_merged_counts_pseudo.tsv.gz - RNA-seq count matrices<br>
DOI: 10.6084/m9.figshare.14460102.v1
title: Investigating drivers’ geospatial abilities in unfamiliar environments (survey dataset and statistical analysis workflow)

description: The documents included in this dataset provide information on:a) driving instructions given to each of the two groupsb) an exemplary questionnaire given to participants translated in English,each one them accompanied with a txt metadata file named accordingly.c) The dataset itself, in the form of a zip archive, constitutes the responses of the participants to the questionnaire in tabular form of csv files.The collected data are categorized in distinct csv files according to the theme/topic/part of the survey they correspond to, e.g., Demographics, Santa Barbara Sense of Direction scale (SBSoD), etc.Metadata on each csv file and their column headings are also included in a txt file, named accordingly. Finally, the R script to run all statistical analyses detailed in the paper is also included.
DOI: 10.6084/m9.figshare.13372505
title: Clustering of synthetic routes using tree edit distance

description: Results from AiZynthFinder tool that is presented in a preprint with the same name as this document. <br>The dataset can be loaded in python with:import pandas as pddata = pd.read_hdf("finder_output.hdf5", "table")
DOI: 10.6084/m9.figshare.13372505.v2
title: Clustering of synthetic routes using tree edit distance

description: Results from AiZynthFinder tool that is presented in a preprint with the same name as this document. <br>The dataset can be loaded in python with:import pandas as pddata = pd.read_hdf("finder_output.hdf5", "table")
DOI: 10.6084/m9.figshare.14465607
title: depression-n.xlsx

description: depression and digit ratio
DOI: 10.5281/zenodo.4709994
title: Data for the publication "Process-oriented analysis of aircraft soot-cirrus interactions constrains the climate impact of aviation"

description: This repository contains all data shown in the figures of the publication.
DOI: 10.5281/zenodo.4709993
title: Data for the publication "Process-oriented analysis of aircraft soot-cirrus interactions constrains the climate impact of aviation"

description: This repository contains all data shown in the figures of the publication.
DOI: 10.6084/m9.figshare.14260499.v2
title: Norfish Dutch Icelandic Cod Fishery 1520–1852

description: The first quantitative evidence of Dutch cod fishing off the Icelandic coast is reported in 1655; Captain Jelle Alberts, from Vlieland in Friesland (Frisia) a province of the Netherlands, returned from Icelandic waters after 11 weeks of fishing with a cargo of salted cod. The condition of sale of these sated cod was that each specimen had to measure at least 22 inches to the tail (56cm) or else it would only count as half a cod (two would be counted as one).
DOI: 10.15468/y8bh9v
title: Lycoris wulingensis, a dwarf new species of Amaryllidaceae from Hunan, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zhang, Si-Yu, Huang, Ying, Zhang, Pei, Zhu, Ke-Run, Chen, Yong-Bing, Shao, Jian-Wen (2021): Lycoris wulingensis, a dwarf new species of Amaryllidaceae from Hunan, China. PhytoKeys 177: 1-9, DOI: http://dx.doi.org/10.3897/phytokeys.177.62741, URL: http://dx.doi.org/10.3897/phytokeys.177.62741
DOI: 10.5066/p9kkpt07
title: Weekly cloud free Harmonized Landsat Sentinel-2 (HLS) Normalized Difference Vegetation Index (NDVI) data for western United States (2016 &amp;ndash; 2019).

description: In support of mapping ecological conditions (e.g. invasive annual grass) in sagebrush-dominated landscapes of the western United States, we developed weekly (starting from week 7 to week 42 and Week 1 starts January 1 or Day of the year 1 to 7, week 2 is from Day of year 8 to 14, and so on) 30-m cloud-free Normalized Difference Vegetation Index (NDVI) from 2016 to 2019. The data was generated with machine-learning techniques (i.e., regression tree [RT]) and harmonized Landsat and Sentinel -2 (HLS) data. The geographic coverage includes areas in the Great Basin, the Snake River Plain, the state of Wyoming, and contiguous areas. This NDVI collection allows for local-scale detection and analysis such as, fuel breaks in sagebrush ecosystem and wildfire activity, that are not possible with coarse scale datasets (such as 250-m).
DOI: 10.5281/zenodo.4707371
title: Sea Surface Height Anomalies of the Arctic Ocean from ICESat-2 and CryoSat-2

description: <strong>Monthly sea surface height anomalies (SSHA) of the Arctic Ocean derived from ICESat-2 and CryoSat-2.</strong> Bagnardi, M. N. Kurtz, A. Petty, R. Kwok, Sea surface height anomalies of the Arctic Ocean from ICESat-2: a first examination and comparisons with CryoSat-2 (submitted, preprint available at https://www.essoar.org/doi/abs/10.1002/essoar.10506377.1). ICESat-2 data: release 003 ATL10 [https://nsidc.org/data/atl10] CryoSat-2 data: Level 2 (L2) SAR, baseline-D [https://science-pds.cryosat.esa.int/#Cry0Sat2_data%2FSIR_SAR_L2]
DOI: 10.5281/zenodo.4707370
title: Sea Surface Height Anomalies of the Arctic Ocean from ICESat-2 and CryoSat-2

description: <strong>Monthly sea surface height anomalies (SSHA) of the Arctic Ocean derived from ICESat-2 and CryoSat-2.</strong> Bagnardi, M. N. Kurtz, A. Petty, R. Kwok, Sea surface height anomalies of the Arctic Ocean from ICESat-2: a first examination and comparisons with CryoSat-2 (submitted, preprint available at https://www.essoar.org/doi/abs/10.1002/essoar.10506377.1). ICESat-2 data: release 003 ATL10 [https://nsidc.org/data/atl10] CryoSat-2 data: Level 2 (L2) SAR, baseline-D [https://science-pds.cryosat.esa.int/#Cry0Sat2_data%2FSIR_SAR_L2]
DOI: 10.6084/m9.figshare.14465721
title: GeneChip microarray assay_STC1.xls

description: <b><i>GeneChip microarray assay</i></b>
DOI: 10.6084/m9.figshare.14465721.v1
title: GeneChip microarray assay_STC1.xls

description: <b><i>GeneChip microarray assay</i></b>
DOI: 10.6084/m9.figshare.14460102.v2
title: Investigating drivers’ geospatial abilities in unfamiliar environments (survey dataset and statistical analysis workflow)

description: The documents included in this dataset provide information on:a) driving instructions given to each of the two groupsb) an exemplary questionnaire given to participants translated in English,each one them accompanied with a txt metadata file named accordingly.c) The dataset itself, in the form of a zip archive, constitutes the responses of the participants to the questionnaire in tabular form of csv files.The collected data are categorized in distinct csv files according to the theme/topic/part of the survey they correspond to, e.g., Demographics, Santa Barbara Sense of Direction scale (SBSoD), etc.Metadata on each csv file and their column headings are also included in a txt file, named accordingly. Finally, the R script to run all statistical analyses detailed in the paper is also included.
DOI: 10.7910/dvn/uyjdbm
title: Greater than the sum of the parts: A qualitative content analysis of what constitutes a good treatment in the inpatient setting

description: Original transcriptions of the conducted interviews for the qualitative study. Interviews from participants (N=5) have not been uploaded due to data sensitivity. They can be accessed via request. All interviews are in German
DOI: 10.17632/3jdywv5jrv.2
title: Profiling B cell immunodominance after SARS-CoV-2 infection reveals antibody evolution to non-neutralizing viral targets, Dugan et al. 2021

description: This study was designed to capture the single cell transcriptome and BCR sequence of B cells that were bait sorted using oligo-tagged viral antigens. Human B cells (viable/CD19+/antigen-PE+ or viable/CD19+/antigen-APC+) were bait sorted after initial magnetic enrichment and used in downstream sequencing. PROTOCOLS: PBMCs were isolated from whole blood (acute samples) or leukoreduction filters (convalescent samples) by use of a Lymphoprep Ficoll gradient and any contaminating red blood cells were lysed by ACK buffer. Cells were then frozen at -80 deg C in fetal bovine serum supplemented with 10% DMSO. On the day of sorting and sequencing cells were thawed and B cell were purified by human pan B cell EasySep enrichment kit from STEMCELL technologies. Cells were partitioned into nanoliter-scale Gel Bead-In-EMulsions (GEMs) to achieve single cell resolution for a maximum of 10,000 individual cells per sample. Utilizing the Chromium Single Cell A Chip Kit(10x Genomics, PN-120236) and Chromium Single Cell 5' Library & Gel Bead Kit (10x Genomics, PN-1000006) , poly-adenylated mRNA from an individual cell was tagged with a unique 16 base pair 10x barcode and 10 base pair Unique Molecular Identifier. Libraries were generated using the Chromium Single Cell 5' Feature Barcode Library Kit (10x genomics, 1000080) and the Chromium Single Cell V(D)J Enrichment Kit Human B Cell (10x Genomics, PN-1000016). The cDNA amplicon size for each library was optimized using enzymatic fragmentation and size selection and the concentration and average fragment size of each library was determined using an Agilent High Sensitivity DNA Kit (Agilent). Specifically, user guide CG000186 Rev D was used for all steps. All libraries were sequenced on an Illuina NextSeq550 or an Illumina NextSeq500 with 26 cycles apportioned for read 1, 8 cycles for the i7 index, and 134 cycles for read 2 using an NextSeq 500/550 High Output Kit v2.5 (150 Cycles). Some samples were sequenced using a NextSeq 550 housed within the Pritzker School of Molecular Engineering's Chicago Immunoengineering Innovation Center (Chicago, IL) and others on a NextSeq500 belonging to the University of Chicago Genomics Facility (Chicago, IL - RRID: SCR_019196) DATA PROCESSING PIPELINE: Demultiplexing the Illumina sequencer's base call files (BCLs) for each flowcell directory into FASTQ files was performed by "cellranger mkfastq" (cellranger version 3.02) Gene counts were calculated using "cellranger count" (cellranger version 3.02) under default setting， BCR sequences were assembled using "cellranger vdj" (cellranger version 3.02) under default setting. GRCh38-1.2.0 for transccriptome, cellranger-vdj-GRCh38-alts-ensembl-2.0.0 for V(D)J
DOI: 10.17632/3fb52m5szd.1
title: The cross constraint dataset

description: The dataset for GJI manuscript entitled "Cross constraint high-resolution density inversion method for the joint inversion of airborne and ground gravity data".
DOI: 10.15151/esrf-es-428590045
title: PDF measurements of oxide polycrystals

description: PDF measurement of inorganic oxide polycrystals
DOI: 10.6084/m9.figshare.14465730
title: Morphology mirrors trophic niche in a freshwater amphipod community

description: The file contains separate tabs containing gut content data, morphometric measurements and a combined dataset of gut content and dietary relevant morphological trait measurements.
DOI: 10.17632/tfh92c5jtz.1
title: Appendix : Modeling the impacts of water-land allocation alternatives on food security and agricultural livelihoods in Egypt: Welfare analysis approach

description: This supplementary document illustrates the major components of the hydroeconomic, and welfare analysis model used and applied for the Nile Basin of Egypt. The documentation is organized in five sections, starting with the table of major sets and subsets, parameters, variables, conversion units and followed by a list of the main equations used in our model. The sets and subsets refer to the dimensions over which the model is defined. Parameters are the major data inputs used in our model, while variables are the unknown values to be estimatedinternally by the model. The list of conversion units shows the conversion of local units to international units. Major equations that define the relationship between different variables in the model are shown also. The modeling is developed using General Algebraic Modelling System (GAMS) software. The model comprises one headwater flow, 10 river gauges nodes, 13 diversion nodes, 13 consumption nodes, 13 return nodes, 13 unaccounted water nodes, two reservoirs, 22 crops, three irrigation seasons, a 10 years’ time span, and four optimization policies. Those elements are integrated and comprise 40 block equations containing 132,600 single equations. The model also contains 30 block variables that makes 185,496 single variables. The model has been applied to Egypt’s part of Nile Basin as a case study. The current model is an update and development of simpler version published by Gohar and Ward (2010, 2013).
DOI: 10.6084/m9.figshare.14465736
title: Data and Code for Chagumaira et al. 2021

description: Data and code presented by Chagumaira et al "Communicating uncertainties in spatial predictions of grainmicronutrient concentration" The data provided with this script are anonymized and contain no personal information about participants in the study. This is in accordance with the terms under which ethical approval for the study which was granted by University of Nottingham School of Sociology and Social Policy Research Ethics subcommitee, references BIO1920-004, BIO1920-007 for the Malawi and Ethiopia exercises respectively. We hold consent forms from all participants which record that they understand and have given informed consent to these terms. Note that oversight of research ethics for this work by the University of Nottingham was undertaken in agreement with research partners in Malawi and Ethiopia, where research into and capacity strengthening for research ethics for food system studies is part of the scope of the GeoNutrition Project (Bill and Melinda Gates Foundation, INV-009129).<br>
DOI: 10.6084/m9.figshare.14465736.v1
title: Data and Code for Chagumaira et al. 2021

description: Data and code presented by Chagumaira et al "Communicating uncertainties in spatial predictions of grainmicronutrient concentration" The data provided with this script are anonymized and contain no personal information about participants in the study. This is in accordance with the terms under which ethical approval for the study which was granted by University of Nottingham School of Sociology and Social Policy Research Ethics subcommitee, references BIO1920-004, BIO1920-007 for the Malawi and Ethiopia exercises respectively. We hold consent forms from all participants which record that they understand and have given informed consent to these terms. Note that oversight of research ethics for this work by the University of Nottingham was undertaken in agreement with research partners in Malawi and Ethiopia, where research into and capacity strengthening for research ethics for food system studies is part of the scope of the GeoNutrition Project (Bill and Melinda Gates Foundation, INV-009129).<br>
DOI: 10.17632/rjmtx55vxw.1
title: WB raw date

description: our study implemented MPTP-induced PD in vivo model and MPP+-induced in vitro model to explore the therapeutic effect of berberine on dopaminergic neurons degeneration and to elucidate the role of autophagy in ameliorating α-synuclein accumulation in PD. So we used WB to detect the related indexes of TH,a-synuclein and the protein of autophagy in the experiment.
DOI: 10.17632/3c4frr9362.1
title: Effect of Metallic Crystal Inspired Atomic Tessellations on Mechanical Properties and Energy Absorption of Bioinspired Sea Urchin Lattice Structures

description: Raw data set of uniaxial compression