cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.r3xony
title: Occurrence Download

description: A dataset containing 92411 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is UPCB - Herbário do Departamento de Botânica"
 ]
}

 The dataset includes 92411 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004123-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vyrm5v
title: Occurrence Download

description: A dataset containing 2147 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Fossil",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Unknown evidence"
 ]
 },
 "Country is Colombia",
 "HasCoordinate is true",
 "TaxonKey is Geranoaetus melanoleucus (Vieillot, 1819)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2147 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000689-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mva8w0
title: Occurrence Download

description: A dataset containing 2922 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Acer spicatum Lam.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2922 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029218-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.coguod
title: Occurrence Download

description: A dataset containing 349 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Manis javanica Desmarest, 1822"
 ]
}

 The dataset includes 349 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012454-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2hfpae
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Abies ×vilmorinii Mast.",
 "DecimalLatitude is greater than or equal to -90",
 "DecimalLongitude is greater than or equal to -180"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023604-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ayzx4w
title: Occurrence Download

description: A dataset containing 256 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Listronotus appendiculatus C.H.Boheman, 1842"
 ]
}

 The dataset includes 256 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002936-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ongiby
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is R. L. McGregor Herbarium Vascular Plants Collection"
 ]
}

 The dataset includes 41 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019377-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dj8wax
title: Occurrence Download

description: A dataset containing 6070 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pera glabrata (Schott) Poepp. ex Baill."
 ]
}

 The dataset includes 6070 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002937-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.663z3k
title: Occurrence Download

description: A dataset containing 2381 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Undaria pinnatifida (Harv.) Suringar"
 ]
}

 The dataset includes 2381 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095814-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.neau2w
title: Occurrence Download

description: A dataset containing 127901 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-88.56995 41.37243,-87.17834 41.37243,-87.17834 42.5056,-88.56995 42.5056,-88.56995 41.37243))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantae",
 "Year 2012-2022"
 ]
}

 The dataset includes 127901 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198346-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k6xj9b
title: Occurrence Download

description: A dataset containing 1009 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Suivi des oiseaux de passage : programme ACT - Programme ACT : Répartition Merle noir 2012 - 2016 Coordonnées GPS Lambert 93"
 ]
}

 The dataset includes 1009 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025838-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zu3nr4
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1000-2008",
 "Geometry POLYGON((38 -10,47 -10,47 0,38 0,38 -10))",
 "HasCoordinate is true",
 "TaxonKey is Leptoscarus vaigiensis (Quoy & Gaimard, 1824)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 29 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027610-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pajuih
title: Occurrence Download

description: A dataset containing 6736654 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-6.86670 35.21245,-1.55481 35.21245,-1.55481 37.33830,-6.86670 37.33830,-6.86670 35.21245))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6736654 records from 482 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019402-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zxtpaz
title: Occurrence Download

description: A dataset containing 751 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Suivi des oiseaux de passage : programme ACT - Programme ACT : Répartition Pie bavarde 2007 - 2011 Coordonnées GPS Lambert 93"
 ]
}

 The dataset includes 751 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025849-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ytlhou
title: Occurrence Download

description: A dataset containing 678 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Odontota dorsalis (Thunberg, 1805)"
 ]
}

 The dataset includes 678 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002944-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hmo5je
title: Occurrence Download

description: A dataset containing 619 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chamaemelum nobile L.",
 "Geometry POLYGON((-21.621093 61.270232,-21.621093 34.307143,31.640625 34.307143,31.640625 61.270232,-21.621093 61.270232))"
 ]
}

 The dataset includes 619 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095828-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4k3pqn
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Banareia villosa Rathbun, 1906"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010268-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nmv8mh
title: Occurrence Download

description: A dataset containing 306 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Japan",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pinus pumila (Pall.) Regel"
 ]
}

 The dataset includes 306 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095835-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bfq3ks
title: Occurrence Download

description: A dataset containing 765 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Suivi des oiseaux de passage : programme ACT - Programme ACT : Répartition Pie bavarde 2011 - 2015 Coordonnées GPS Lambert 93"
 ]
}

 The dataset includes 765 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025854-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f2noll
title: Occurrence Download

description: A dataset containing 25976 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ursus arctos Linnaeus, 1758"
 ]
}

 The dataset includes 25976 records from 194 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002955-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9f234n
title: Occurrence Download

description: A dataset containing 788 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bolitoglossa adspersa (Peters, 1863)"
 ]
}

 The dataset includes 788 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095842-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fssaaf
title: Occurrence Download

description: A dataset containing 556 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-1.38702 43.89413,-1.59027 43.43318,-1.41998 43.3813,-1.18927 43.3813,-1.02997 43.45312,-0.95306 43.62832,-0.9201 43.78716,-1.12335 43.88226,-1.38702 43.89413))",
 "TaxonKey is Corylus avellana L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 556 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018421-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zm0l0x
title: Occurrence Download

description: A dataset containing 763 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Suivi des oiseaux de passage : programme ACT - Programme ACT : Répartition Pie bavarde 2012 - 2016 Coordonnées GPS Lambert 93"
 ]
}

 The dataset includes 763 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025853-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ar7lgf
title: Occurrence Download

description: A dataset containing 154 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Données espèces - Expertise IPE Bailleau 2009"
 ]
}

 The dataset includes 154 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024418-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cv2pdz
title: Occurrence Download

description: A dataset containing 1207 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Andinobates tolimensis (Bernal-Bautista, Luna-Mora, Gallego & Quevedo-Gil, 2007)",
 "TaxonKey is Andinobates virolinensis (Ruiz-Carranza & Ramírez-Pinilla, 1992)",
 "TaxonKey is Andinobates dorisswansonae (Rueda-Almonacid, Rada, Sánchez-Pacheco, Velásquez-Álvarez & Quevedo-Gil, 2006)",
 "TaxonKey is Andinobates opisthomelas (Boulenger, 1899)",
 "TaxonKey is Andinobates daleswansoni (Rueda-Almonacid, Rada, Sánchez-Pacheco, Velásquez-Álvarez & Quevedo-Gil, 2006)",
 "TaxonKey is Andinobates cassidyhornae Amézquita, Márquez, Mejía-Vargas, Kahn, Suárez & Mazariegos, 2013",
 "TaxonKey is Andinobates bombetes (Myers & Daly, 1980)"
 ]
 }
 ]
}

 The dataset includes 1207 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095846-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pe09jq
title: Occurrence Download

description: A dataset containing 1736 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Henriettea succosa (Aubl.) DC."
 ]
}

 The dataset includes 1736 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019383-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ncohf
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Ecuador",
 "TaxonKey is Dasypus novemcinctus Linnaeus, 1758"
 ]
}

 The dataset includes 15 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047804-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ft3ybw
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rubus nigerrimus (Greene) Rydb.",
 "Year 1990-2020"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095848-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqypzs
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Amphibia",
 "TaxonKey is Aves",
 "TaxonKey is Insecta",
 "TaxonKey is Reptilia",
 "TaxonKey is Mammalia",
 "TaxonKey is Chilopoda",
 "TaxonKey is Diplopoda",
 "TaxonKey is Arachnida"
 ]
 },
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation"
 ]
 },
 "HasCoordinate is true",
 "DecimalLongitude is greater than or equal to 15.000000",
 "DecimalLongitude is less than 20.000000",
 "DecimalLatitude is greater than or equal to 5.000000",
 "DecimalLatitude is less than 10.000000",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2018"
 ]
}

 The dataset includes 115 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001293-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.i2gzsb
title: Occurrence Download

description: A dataset containing 9748690 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is naturgucker"
 ]
}

 The dataset includes 9748690 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004132-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r14fac
title: Occurrence Download

description: A dataset containing 6326 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Ecuador",
 "Country is Peru",
 "Country is Argentina",
 "Country is Chile",
 "Country is Colombia",
 "Country is Bolivia (Plurinational State of)"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Calceolaria L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6326 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000144-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gv8qu7
title: Occurrence Download

description: A dataset containing 6760 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Hemorrhois hippocrepis",
 "Year 1000-2025"
 ]
}

 The dataset includes 6760 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047721-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29821949
title: <b>Water mass specific genes dominate the Southern Ocean microbiome</b>

description: These data correspond to co-abundant groups of AGNOSTOS clusters (CAGs) catalogs, annotations and abundance matrices obtained from 218 metagenomes sampled during the Antarctic Circumpolar Expedition (ACE). The methodology and results obtained using these data are presented in the study entitled <b>Water mass specific genes dominate the Southern Ocean microbiome</b>, by Faure et al. (2025).Here is a description of each catalog/dataset :<b>Metadata_CTD_ACE_clean</b>: Environmental metadata for CTD samples.<b>Metadata_UDW_ACE_clean</b>: Environmental metadata for UDW samples.<b>Metadata_GeneMat_KNNimputed.rds</b>: Environmental data for metagenomics samples, after imputation of missing values.<b>CAGs_T60MAX_FL_RSquared10.txt</b>: Catalog of CAGs, linking every env-AGC (AGC with random forest R-squared above 10%, see the study for more details) from the small size fraction to its CAG.<b>CAGs_T60MAX_ATT_RSquared15.txt</b>: Catalog of CAGs, linking every env-AGC (AGC with random forest R-squared above 15%, see the study for more details) from the large size fraction to its CAG.<b>GM_CAGs_T60MAXGQ_transposed_NZVuniquecut20_FL_RSquared10.tsv.gz</b>: CAG-level matrix of coverage, focusing on CAGs from the free-living size fraction (0.2-3 and 0.2-40 µm). CAG = cluster of co-abundant AGNOSTOS gene clusters, please refer to Faure et al. for methods details on the clustering. In this matrix, each line corresponds to one sample and each column corresponds to on CAG, as identified in the Annotation matrix. Cells contain the sum of AGNOSTOS cluster-level coverage values for each CAG.<b>GM_CAGs_T60MAXGQ_transposed_NZVuniquecut20_ATT_RSquared15.tsv.gz</b>: CAG-level matrix of coverage, focusing on CAGs from the &gt;3µm size-fraction. In this matrix, each line corresponds to one sample and each column corresponds to on CAG, as identified in the Annotation matrix. Cells contain the sum of AGNOSTOS cluster-level coverage values for each CAG.<b>FuncEnrich.tar.gz</b>: Folder containing functional enrichment tests outputs for each CAG of interest discussed in Faure et al. (please refer to the study for more details on the methodology).<b>TaxoCags_UniRef90.tar.gz</b>: Folder containing taxonomic annotations of CAGs of interest discussed in Faure et al. based on Uniref90 using MMSeqs2, please refer to the study for more details on the methodology.<b>TaxoCags_GTDB.tar.gz</b>: Folder containing taxonomic annotations of CAGs of interest discussed in Faure et al. based on GTDB using Kraken2, please refer to the study for more details on the methodology.<b>Annotations_SAR11_CAGs.tar</b>: Folder containing annotations specific to the three SAR11-related CAGs displayed in our study, including FeGenie outputs.Other relevant files for our study can all be found on Zenodo under DOI 10.5281/zenodo.14181291<br>