cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22153745.v1
title: Supplementary Material for: The relationship between vascular aging phenotypes and renal damage among individuals with type 2 diabetes

description: Objective: To investigate the relationship between vascular aging (VA) phenotypes and renal damage in type 2 diabetic population. Methods: In this cross-sectional study, we included 8,141 individuals with type 2 diabetes who participated in the Kailuan Study during 2010 to 2018 and completed the brachial-ankle pulse wave velocity (baPWV) assessment for arterial stiffness, an indicator for VA. The age- and sex-specific 10th and 90th percentiles of baPWV based on a reference cohort were used as cutoffs to define supernormal VA (SUPERNOVA, baPWV&lt;10th percentiles), normal VA (NVA, baPWV 10th to 90th percentiles), and early VA (EVA, baPWV&gt;90th percentiles). The estimated glomerular filtration rate (eGFR) and proteinuria levels were used to assess renal damage, including isolated proteinuria, isolated kidney function decline (eGFR&lt;60ml/min/1.73m2), and proteinuria combined with kidney function decline. Multivariable logistic regression analysis was used to analyze the relationship between VA phenotypes and diabetic kidney damage. Results: The prevalence of isolated proteinuria, isolated kidney function decline, and proteinuria combined with kidney function decline was 17.0%, 12.2%, and 5.4%, respectively. Compared with NVA, SUPERNOVA was associated with 34% lower odds (95% confidence interval [CI]: 0.46-0.96) of isolated proteinuria after adjusting for age, sex, and other potential confounders. EVA was associated with higher odds of all three types of kidney damage; the adjusted odds ratio (95% CI) was 1.42 (1.20-1.67) for proteinuria, 1.24 (1.01-1.51) for kidney function decline, and 1.56 (1.18-2.06) for proteinuria combined with kidney function decline. Conclusions: Vascular aging phenotypes are associated with renal damage, especially isolated proteinuria. SUPERNOVA was associated with lower odds of isolated proteinuria and EVA was associated with higher odds of proteinuria and kidney function decline.
DOI: 10.6084/m9.figshare.27605376.v2
title: Supplementary Material for: Added value in low-risk pregnancies of longitudinal changes in uterine Doppler and circulating angiogenic factors during the third trimester in predicting term preeclampsia

description: Introduction: To assess the relationship between longitudinal changes in the uterine Doppler velocimetry and the maternal profile of angiogenic factors in the third trimester of pregnancy and to assess their ability to predict term preeclampsia. 
Methods: A cohort of low-risk pregnant women was constructed at second trimester routine scan and scheduled for a uterine Doppler evaluation and measurement of the circulating levels of angiogenic factors at ~30 and ~36 weeks. The performance of both parameters at both time-points and their change over time from the first to the second measurement in predicting term preeclampsia was evaluated by logistic regression and receiver operating characteristic curve (ROC) analyses. 
Results: A total of 1172 women were analyzed, of which 28 (2.4%) women developed term preeclampsia. At ~30 weeks, a model including the ratio sFlt-1/PlGF (fms-like tyrosine kinase-1/placental growth factor) and the uterine Doppler explained 16.2% of the uncertainty of developing term preeclampsia, while at ~36 weeks the same variables explained 25.2% [p&lt;0.001]. A model including the longitudinal changes of both predictors had an R2 of 26.8%, which was not significantly different from that of the ~36 weeks evaluation [p=0.45]. The area under the curve (AUC) of the ~36 weeks sFlt-1/PlGF ratio was significantly higher than at ~30 weeks (0.86 [0.77-0.94] vs. 0.81 [0.73-0.9]; p=0.043). The AUC of the 30-to-36 week change of the sFlt-1/PlGF ratio (0.85 [0.77-0.94]) did not significantly differ from that of at ~36 weeks (p=0.82). At ~36 weeks, for a 10% of false positives, the sFlt-1/PlGF ratio had a detection rate of 71.4%, with positive and negative likelihood ratios of 7.3 and 0.32, respectively. 
Conclusion: A cross-sectional measurement of the sFlt-1/PlGF ratio outperforms uterine Doppler in predicting term preeclampsia. The combination of both markers does not improve such prediction, nor the evaluation of the longitudinal changes between ~30 and ~36 weeks.
DOI: 10.6084/m9.figshare.9871157.v1
title: High hardness steel used as ballistic armor: mechanical properties

description: ABSTRACT Ballistic armors are designed to resist specific threats, which depend on the application. These threats can be generated by firearm projectiles or fragments from explosions with different kinetic energies. The materials usually used for this purpose are metallic, nonmetallic and composite, being evaluated by dynamic tests, such as the Hopkinson Pressure Bar and the ballistic ones at the desired level of protection. However, the material can be previously evaluated by traditional mechanical tests, such as impact and surface hardness tests, classifying it as a material that can be used in ballistic protection. Also, during of serial production of military combat vehicles, the quality control of the applied material can be done by mechanical tests like the mentioned above to verify compliance with the established requirements. Due to its cost / ballistic resistance ratio, steel is still the most used material to produce of combat vehicles. There are international standards that show the minimum mechanical properties that a steel need to get specific ballistic protection. The objective of this work was to evaluate the compliance of a high hardness steel, produced by Brazilian steel company, proposed for the production of military vehicles with protection level up to ammunition 7.62 mm, through the impact, hardness and bending tests with the MIL-DTL-46100E. The analysis of the fracture surface of the samples tested by Charpy impact was carried out to correlate the mechanical properties of the material with the fracture mode. The results obtained and the characterization of the fracture surface suggest that the studied steel does not have the mechanical behavior suitable for the use in combat vehicles, been necessary to prove it through the ballistic test.
DOI: 10.6084/m9.figshare.10289162.v1
title: Ciona Calcium Imaging Dataset Nov 2019

description: <b>Please see the attached README file for more details</b><br><b></b><b><br></b><b>Overview<br></b><br>This dataset contains calcium imaging data from various genetically defined neuronal populations in the brain of Ciona intestinalis. It also contains data from non-neuronal cells, the epidermis (CesA cells) and Trunk Lateral cells (HNK-1 cells)<br><br>The data, analysis procedures, and interactive figures are all functionally linked and encapsulated in a project that can be easily explored with our free open source software platform (http://www.mesmerizelab.org/). The raw data & analysis procedures are fully transparent and traceable at the level of individual datapoints (see the "Interactive Heatmaps" example at the bottom of this page: http://www.mesmerizelab.org/Overview.html).<br><br>The dataset is structured as a Mesmerize project. The easiest way to get Mesmerize is to install the snap package. Instructions are here: http://www.mesmerizelab.org/user_guides/installation.html<br><br><b>Opening the dataset</b><br><br>The dataset is compressed as a tar archive with gzip compression. The decompressed size is 477.6 GB so make sure you have sufficient space on your filesystem. Decompression can take a while, you may get better performance if you read from a different filesystem than the one that you write to. With a 2019 i7/Ryzen 7 CPU it should take ~30 minutes if the filesystem is on an SSD. I recommend using a fast filesystem to store the decompressed data since some of the image sequences are large.<br><br><b>pigz</b> should be faster for decompression compared to standard tar. For Ubuntu & Debian based distros you can install pigz through apt. For other distros please check your repositories.<br><br>sudo apt install pigz<br><br>On Mac OSX you can install pigz through brew. See this: https://brewinstall.org/Install-pigz-on-Mac-with-Brew/<br><br>Decompressing:<br><code>pigz -dc ciona_cell_types_nov11_2019_chatzigeorgiou_lab.tar.gz | tar -xf</code><code><br></code>If you cannot install pigz you can decompress with tar. This may take a long time.<br><br><code>tar xvzf ciona_cell_types_nov11_2019_chatzigeorgiou_lab.tar.gz</code><br><b>The archive will unpack into a directory called "share", just navigate to <i>"share/data/temp/kushal/" </i>and you will see the actual dataset directory.</b><br>Once decompressed, you can explore the dataset using Mesmerize. Simply open the Project Directory through the Mesmerize Welcome Window (the window that you are presented with when you launch Mesmerize). You will see the available analysis flowcharts and plots similar to this: http://www.mesmerizelab.org/Overview.html#welcome-window<br><b>See the attached README file for more details</b>
DOI: 10.6084/m9.figshare.10308617.v2
title: raw data.xlsx

description: This study retrospectively assessed the data of 95 patients with ARDS caused by severe pneumonia. Patients were divided into NGS group and no-NGS group. Clinical characteristics, laboratory examination, ICU cost and prognosis in the two groups were compared. Meanwhile, compared patients in NGS group, mNGS and routine detection methods had different detection efficiency for bacteria, fungi, viruses, unusual pathogens and co-infections.
DOI: 10.6084/m9.figshare.2067249.v2
title: A multi FASTA alignment of Salmonella Typhi genomes, mapped to CT18 from the Nature genetics paper - Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events

description: A multi FASTA alignment of Salmonella Typhi genomes, mapped to CT18 ( AL513382) with repeat regions and mobile elements filtered out. It is an intermediate result from the Nature Genetics paper "Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events" by Vanessa Wong. This dataset is used as part of another paper on the SNP-sites software.
DOI: 10.6084/m9.figshare.27841908.v1
title: Plantae_GT_Research data for Identification of Important Plant Areas for flora conservation in Guatemala_database.zip

description: This study identifies 43 potential Important Plant Areas (IPA) in Guatemala, a biodiversity hotspot, covering 3.54% of the national territory. Using data from the Global Biodiversity Information Facility (GBIF), this study assesses threatened species, botanical richness, and endemism through a multi-criteria hierarchical analysis (MCDM-AHP). The findings highlight the urgency for targeted conservation strategies to address deforestation, agricultural expansion, and climate change, providing a foundation for future conservation and policy efforts.
DOI: 10.6084/m9.figshare.718175.v1
title: AMPHORA software for automated phylogenomic analysis

description: AMPHORA is an Automated Phylogenomic Inference Pipeline for bacterial sequences. From a given a set of protein sequences, it automatically identifies 31 phylogenetic marker genes. It then generates high-quality multiple sequence alignments for these genes and make tree-based phylotype assignments.
DOI: 10.17632/psb2sw8vdk
title: MEDPRO Device

description: Easy EDA, KiCAD PCB, PCB Gerber files, 3D printing files, nextion gui files and arduino code files of MEDPRO device
DOI: 10.17632/thfkcryrj9
title: Ninety-Four Most Frequent Characters and Sixteen Lexical Features of Three Ancient Chinese Vernacular Novels

description: This dataset provides a normalized frequency of ninety-four Most Frequent Characters (MFCs) and normalized values of sixteen lexical features of each chapter of three ancient Chinese vernacular novels, Marriage Bonds to Awaken the World (Xing Shi Yin Yuan Zhuan 醒世姻緣傳; MBAW), Pu Songling’s Popular Songs from Leisure Studio (Liao Zhai Li Qu Ji 聊齋俚曲集; PSLS), and Ding Yaokang’s Sequel to the Plum in Golden Vase (Xu Jin Ping Mei 續金瓶梅; SPGV). MBAW is an important work in the developing process of Chinese long vernacular novels. However, a significant question of MBAW, the authorship of this novel, remains shrouded in mystery. There are two dominant conjectures about the author of MBAW, one is Pu Songling 蒲松齡 (1640-1715) and the other is Ding Yaokang 丁耀亢 (1599-1669). The data can be used to evaluate if the authorship of MBAW can be attributed to either Pu Songling or Ding Yaokang through a comparative examination of the linguistic stylings of MBAW and two other novels from the same genre, PSLS and SPGV, which have been confirmed as the works of Pu Songling and Ding Yaokang, respectively. The 94 MFCs of the two novels are as follows: 了, 的, 不, 一, 是, 人, 他, 說, 來, 子, 你, 我, 個, 這, 那, 有, 道, 著, 也, 去, 家, 上, 裡, 大, 在, 就, 到, 得, 又, 兩, 日, 麼, 下, 只, 好, 見, 要, 頭, 還, 叫, 出, 兒, 沒, 把, 看, 老, 二, 小, 姐, 十, 娘, 生, 三, 門, 都, 回, 如, 打, 知, 心, 做, 才, 相, 起, 自, 過, 可, 合, 天, 時, 事, 與, 官, 甚, 銀, 公, 中, 夫, 吃, 前, 無, 後, 將, 怎, 們, 年, 外, 些, 問, 走, 聽, 待, 多, and 進. Definitions of the 16 lexical features are provided in the second worksheet of the Excel file named “Lexical features”.
DOI: 10.6084/m9.figshare.23264165.v1
title: Placenta PE, trophoblasts single nuclei RNAseq dataset. Admati, Skarbianskis et al.

description: Final datasetof single nuclei RNAseq including all metadata. The data saved as a table of genesXcells of UMI counts.
DOI: 10.6084/m9.figshare.26124271.v1
title: Supplementary Material for: Chemical Leukoderma or Vitiligo – Where do we draw the line? : A Case Report

description: Introduction: Vitiligo is a skin depigmenting disorder influenced by both genetic and environmental factors. In contrast, chemical leukoderma (CL) is an acquired form of depigmentation caused by repeated exposure to specific chemical compounds. There is growing evidence of a similar pathogenesis in both entities, however in some cases it remains unclear. Case Presentation: We present a case of a 26-year-old female who developed widespread depigmentation after using "lightening creams" containing Monobenzyl Ether Hydroquinone purchased online. The lesions displayed various tones of skin color, including discrete macules and confluent patches with defined borders. Her history of chemical exposure and subsequent depigmentation strongly supports the diagnosis of CL. Conclusion: We aim to share this interesting case of widespread CL, review of pathogenesis and highlight the importance of awareness about commercially distributed products, particularly those sold online.
DOI: 10.6084/m9.figshare.5509429.v2
title: R-CNN VGG nail plate detect model

description: Requirements- Linux (Ubuntu)<br>- NVIDIA GPU (GTX-1050 or better)<br>- BVLC PyCaffe<br>- py-faster RCNNs<br><br>Download- VGG-16 nail part detection model<br>- demo_nail.py<br><br>How to use1. It is difficult to compile a CPU-mode faster-rcnn on Windows operating system at present. <br>NVidia GPU with CUDA and cuDNN is required because it takes too much time to conduct CNNs training without GPU<br>We recommend to install py-faster-rcnn program (https://github.com/rbgirshick/py-faster-rcnn) which operated on Linux (http://ubuntu.com).<br>Installation Tutorial by Huangying : https://huangying-zhan.github.io/2016/09/22/detection-faster-rcnn.html<br><br>2. Download (VGG-16 nail part detection model) <br>Model - VGG-16 nail part detection ; 2 outputs(class) : #0 background #1 nail<br><br>The VGG-16 nail part model was trained using information about the crop location on the nail part from the Asan A2 dataset as instructed by the following tutorials.<br>http://sgsai.blogspot.kr/2016/02/training-faster-r-cnn-on-custom-dataset.html<br>https://github.com/deboc/py-faster-rcnn/tree/master/help<br><br>3. We modified demo.py of py-faster-rcnn (https://github.com/rbgirshick/py-faster-rcnn/blob/master/tools/demo.py) to get the following image.<br><br>Download our demo_nail.py ( #1 Main Server; US East ) <br>
DOI: 10.6084/m9.figshare.6073838.v2
title: Jerash Aerial Photos

description: Orthophotos of Jerash and it's environs purchased by the Danish-German Jerash Northwest Quarter Project from the Royal Geographic Center of the Hashemite Kingdom of Jordan<br>Used in the following article:<br>Stott, D., Kristiansen, S.M., Lichtenberger, A. and Raja, R., 2018. Mapping an ancient city with a century of remotely sensed data. <i>Proceedings of the National Academy of Sciences</i>, <i>115</i>(24), pp.E5450-E5458.<br><br>https://www.pnas.org/content/115/24/E5450<br>
DOI: 10.17632/cp4d7t74vb
title: Seurat objects for multiome analysis of neuroblastoma cell lines - 4/4

description: RDS files containing processed Seurat objects for multiome analysis of neuroblastoma cell lines. File names reflect the cell line.
DOI: 10.17632/p3xpk6gkm6
title: Work from home during the COVID-19 pandemic and its influences on project success.

description: Data obtained from a survey of project specialists who were working telecommuting during the COVID-19 pandemic. They were asked about their perceptions regarding the influence of working from home on success criteria, as well as about their profile and some intrastructure conditions for the development of their work.
DOI: 10.6084/m9.figshare.1304523.v1
title: Bangladesh Interruption of Secondary Transmission of Influenza (BISTIS)

description: These are deidentified data from the Bangladesh Interruption of Secondary Transmission of Influenza Study (BISTIS), a randomized controlled trial conducted in Kishoregonj, Bangladesh, to investigate the effects of intensive handwashing promotion on transmission of influenza and influenza-like illness among household members.
DOI: 10.6084/m9.figshare.21770417.v1
title: ROSES systematic review checklist for "How do natural changes in flow magnitude affect fish abundance and biomass in temperate regions? A systematic review"

description: ROSES for Systematic Review Report
DOI: 10.6084/m9.figshare.24104502.v1
title: Revision: The Construction of Educational Perspectives in the Post-Examination Contex

description: his paper serves as a guide for overseeing a bachelor's thesis in music education titled "IMPLEMENTASI STRATEGI CARD SORT TERHADAP PEMBELAJARAN SENI BUDAYA PADA MATERI TANGGA NADA DI KELAS V SD NEGERI 334 MALUKU TENGAH." The primary objective of the thesis supervision for music education students is to promote the incorporation of educational and pedagogical elements within the research conducted on the music teaching process. Hence, music's educational and pedagogical dimensions may be harmonised with the goals and educational achievements put forward by the study on card sorting procedures in primary school. However, it is important to note that this text is exclusively written in Bahasa, given that the student, their native language, and the study location are all in Indonesia. In this b of thesis supervision, author [i] was the second supervisor and evaluated the thesis from an educational and pedagogical perspective, drawing upon my knowledge and background in these areas.<br>
DOI: 10.6084/m9.figshare.29181203.v1
title: BigWig Files

description: Checking CREMP expression in oviduct
DOI: 10.6084/m9.figshare.24770901.v1
title: EcoTest

description: Full Name: AssureTech EcoTest COVID-19 IgG/IgM Antibody Test kit (abbr. BTNx for Pre-Training)organization: raw images, cropped membranes, config: label & cropping dimension<br>
DOI: 10.6084/m9.figshare.25721280.v1
title: Supplementary Material for: A decision-making algorithm for remote digital assessments of Alzheimer’s Disease

description: Introduction. Remote digital assessments (RDA) such as voice recording, video and motor sensors, olfactory, hearing and vision screenings are now starting to be employed to complement classical biomarker and clinical evidence to identify patients in the early AD stages. Choosing which RDA can be proposed to individual patients is not trivial, and often time consuming. This position paper presents a decision-making algorithm for using RDA during teleconsultations in memory clinic settings. Method. The algorithm was developed by an expert panel following the Delphi methodology. Results. The decision-making algorithm is structured as a series of yes-no questions. The resulting questionnaire is freely available online. Discussion. We suggest that the use of screening questionnaires in the context of Memory clinics may help accelerating the adoption of remote digital assessment in everyday clinical practice.
DOI: 10.6084/m9.figshare.25962646.v2
title: Dataset smile

description: Project: Translation, Cultural Adaptation, and Validation of a Smile Aesthetics Scale for Peruvian University Students
DOI: 10.6084/m9.figshare.26062414.v1
title: <b>genome assembly of</b><b> Isodon lophanthodies</b>

description: <b>Genome and annotation of</b><b> Isodon lophanthodies</b>
DOI: 10.6084/m9.figshare.6818792.v1
title: Experiment CLA-SubjectJ-170504-3St-LRHand-Inter

description: Experiment in which subject performed 3 imageries of left and right hand motion and a passive state, recorded at a lower resolution and dynamic range by custom real-time acquisition software (Inter).
DOI: 10.6084/m9.figshare.7577873.v2
title: Doing the ecological through performance

description: One of these videos is the performance trailer for Wild Life, and the other two are edited extracts from the creative process of making Wild Life. They are data in support of the article 'Doing the ecological through performance'.<br><br>
DOI: 10.6084/m9.figshare.9782297.v2
title: An extreme sea level indicator for the contiguous United States coastline

description: Database includes time series of storm surge climatology (SSC) and mean sea level (MSL) indicators. SSC indicators for different regions as well as time series of combined 4.4 and 18.6 year tidal cycles are provided for summer and winter half years separately; MSL indicators and combined contributions of vertical land motion (VLM) and global mean sea level rise (GMSL) are provided at annual resolution. Estimates of location, scale and shape parameters of generalized extreme value distribution for summer and winter half years in different regions along the US coast are provided. Two animation files present the changes of aggregated sea level over time are also included.
DOI: 10.6084/m9.figshare.12733559.v1
title: Squad Strength Data.xlsx

description: Squad Strength data
DOI: 10.6084/m9.figshare.19873345.v1
title: Raw data set for sampling of retrospective samples (analytical data)

description: Raw data set for 304 retrospectively tested samples. 100 negatve and 204 positive for SARS-CoV-2 by 33 rapid antigen tests for SARS-CoV-2. <br> 0 = negative, 1 = positive Ct(OP) = RT-PCR quantification cycle on samples collected as deep oropharyngeal swabs in universal transport medium.
DOI: 10.6084/m9.figshare.23792604.v1
title: Data and R code for elicitation

description: The file "Elicitation data" contains the data resulting from an elicitation process for defining ecological restoration activities, and the file "Rcode Elicitation" contains the corresponding code for estimating the parameters of the elicited distributions.