cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ijwrls
title: Occurrence Download

description: A dataset containing 17131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Banco de Datos de la Biodiversidad de la Comunitat Valenciana",
 {
 "or" : [
 "TaxonKey is Reptilia",
 "TaxonKey is Amphibia"
 ]
 }
 ]
}

 The dataset includes 17131 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029747-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wpzb42
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtandra trisepala C.B.Clarke"
 ]
}

 The dataset includes 63 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019125-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-56383
title: Redemption tidings, vol. 37, nos. 1-52, 1 Jan. - 22 Dec. 1961

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.evsbfy
title: Occurrence Download

description: A dataset containing 2446 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Brazil",
 "Country is Argentina",
 "Country is Paraguay"
 ]
 },
 "OccurrenceStatus is Present",
 "TaxonKey is Conirostrum bicolor (Vieillot, 1809)"
 ]
}

 The dataset includes 2446 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0380115-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-56437
title: Redemption tidings, vol. 37, nos. 1-52, 1 Jan. - 22 Dec. 1961

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.jm94np
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mikania verapazensis R.M.King & H.Rob."
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041114-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6r04hv
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Museum of Comparative Zoology, Harvard University",
 "TaxonKey is Anolis punctatus Daudin, 1802"
 ]
}

 The dataset's 3 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029766-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kezdj7
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sauromalus klauberi Shaw, 1941"
 ]
}

 The dataset includes 38 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0274673-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-56333
title: Redemption tidings, vol. 37, nos. 1-52, 1 Jan. - 22 Dec. 1961

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.25549/pcra-c14-56422
title: Redemption tidings, vol. 37, nos. 1-52, 1 Jan. - 22 Dec. 1961

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.2ucg84
title: Occurrence Download

description: A dataset containing 9745115 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is China"
 ]
}

 The dataset includes 9745115 records from 4992 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080526-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.17126108
title: Additional file 5 of Alterations of DNA methylation were associated with the rapid growth of cortisol-producing adrenocortical adenoma during pregnancy

description: Additional file 5: Enriched GO pathways (Total) within just the pregnant promoter hypomethylated DMPs associated genes.
DOI: 10.6084/m9.figshare.17126113
title: Additional file 2 of Epigenetic modifications potentially controlling the allelic expression of imprinted genes in sunflower endosperm

description: Additional file 2: Table S2. The summary of imprinted genes identified in 12 DAP sunflower endosperm.
DOI: 10.6084/m9.figshare.22369341
title: Lyman et al_Tables_ESM.xlsx from Natural genetic variation in a dopamine receptor is associated with variation in female fertility in <i>Drosophila melanogaster</i>

description: Fertility is a major component of fitness but its genetic architecture remains poorly understood. Using a full diallel cross of 50 <i>Drosophila</i> Genetic Reference Panel inbred lines with whole genome sequences, we found substantial genetic variation in fertility largely attributable to females. We mapped genes associated with variation in female fertility by genome-wide association analysis of common variants in the fly genome. Validation of candidate genes by RNAi knockdown confirmed the role of the dopamine 2-like receptor (<i>Dop2R</i>) in promoting egg laying. We replicated the <i>Dop2R</i> effect in an independently collected productivity dataset and showed that the effect of the <i>Dop2R</i> variant was mediated in part by regulatory gene expression variation. This study demonstrates the strong potential of genome-wide association analysis in this diverse panel of inbred strains and subsequent functional analyses for understanding the genetic architecture of fitness traits.
DOI: 10.6084/m9.figshare.7164545
title: Additional file 13: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

description: Figure S6. KEGG classification of differentially expressed genes. (XLS 247 kb)
DOI: 10.6084/m9.figshare.17126111.v1
title: Additional file 6 of Alterations of DNA methylation were associated with the rapid growth of cortisol-producing adrenocortical adenoma during pregnancy

description: Additional file 6: Enriched KEGG pathways (Total 30) within just the pregnant promoter hypomethylated DMPs associated genes.
DOI: 10.6084/m9.figshare.17126083
title: Additional file 2 of A novel protein AXIN1-295aa encoded by circAXIN1 activates the Wnt/β-catenin signaling pathway to promote gastric cancer progression

description: Additional file 2: Supplementary Table 1. Primer sequences for PCR.
DOI: 10.6084/m9.figshare.17126083.v1
title: Additional file 2 of A novel protein AXIN1-295aa encoded by circAXIN1 activates the Wnt/β-catenin signaling pathway to promote gastric cancer progression

description: Additional file 2: Supplementary Table 1. Primer sequences for PCR.
DOI: 10.6084/m9.figshare.7164950.v1
title: Additional file 2: of Circular RNA BCRC-3 suppresses bladder cancer proliferation through miR-182-5p/p27 axis

description: Figure S1. (a) qRT-PCR analysis of the transfection efficiency of si BCRC-3 vectors in BC cells. (b-d) Flow cytometry, EdU assay and cloning formation assay indicated the effect of BCRC3 KD on cell growth. (e-f) qRT-PCR and western blot analysis of the expression levels of p27 in the cells with KD of BCRC-3. (Data are mean ± SEM of three experiments. Student’s t-test analyzed the difference in a-d, f. * P&lt;0.01 vs. vector). Figure.S2 (a) qRT-PCR and western blot analysis of the expression levels of p27 after transfected with four p27 shRNAs in BC cells. (b) qRT-PCR assay indicating the expression of BCRC-3 in co-transfected cells (Fig. 3f & 3g). (c) qRT-PCR analysis of the expression of BCRC-3 in BC cells after co-transfection (Fig. 4i & 4j). (d) qRT-PCR assay indicating the expression of BCRC-3 after MJ treatment in the cells with KD of BCRC-3 (Fig. 5k). (Data are mean ± SEM of three experiments. Student’s t-test analyzed the difference in a-d. * P&lt;0.01 vs. shNC, vector + shNC, or vector + shP27. & P&lt;0.05 vs. mimic NC or siNC + control. # P&lt;0.05 vs. miR-182-5p or siBCRC-3 + control). Figure.S3 (a-b) qRT-PCR and western blot analysis of the expression levels of p27 in cells with KD of miR-182-5p. (c-e) Flow cytometry, EdU assay and cloning formation assay indicated the effect of the inactivation of miR-182-5p on cell growth. (Data are mean ± SEM of three experiments. Student’s t-test compared the difference in b-e. * P&lt;0.01 vs. anti-NC). Figure.S4 (a) The bioinformatics program RNAhybrid showed the detailed information of three binding sites of miR-182-5p on BCRC-3. (b) Biotin-coupled miR-182-5p wild-type and mutant sequences. (c) Schematic Sequence of the intact miR-182-5p-binding site in wide-type (WT) p27 mRNA 3’-UTR and its mutation (Mut) of p27 3’UTR luciferase reporter. (ZIP 1185 kb)
DOI: 10.6084/m9.figshare.17126047.v1
title: Additional file 1 of Genetic architecture of protein expression and its regulation in the mouse brain

description: Additional file 1: Supplementary Table S1: Proteins identified and quantified by LC/LC-MS/MS. Supplementary Table S2: Differentially expressed (DE) proteins in whole brain between B6 and D2 strains. Supplementary Table S3: Significantly enriched Gene Ontology (GO) terms of DE proteins between C57BL/6 J and DBA/2 J. Supplementary Table S4: Genetic variance and heritability estimates for all 9979 proteins identified. Supplementary Table S5: Variant peptides detected by the proteogenomics analysis. Supplementary Table S6: Peptides showing allele-specific expression.
DOI: 10.6084/m9.figshare.7164593.v1
title: Additional file 1: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

description: Table S1. Primers used in this research. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.12408179.v1
title: Ellipse areas and distances

description: Numerical values for Fig 7 and 12
DOI: 10.6084/m9.figshare.17126116
title: Additional file 3 of Epigenetic modifications potentially controlling the allelic expression of imprinted genes in sunflower endosperm

description: Additional file 3: Table S3. The clusters of imprinted genes in 12 DAP sunflower endosperm.
DOI: 10.6084/m9.figshare.17126116.v1
title: Additional file 3 of Epigenetic modifications potentially controlling the allelic expression of imprinted genes in sunflower endosperm

description: Additional file 3: Table S3. The clusters of imprinted genes in 12 DAP sunflower endosperm.
DOI: 10.6084/m9.figshare.17126099.v1
title: Additional file 2 of Alterations of DNA methylation were associated with the rapid growth of cortisol-producing adrenocortical adenoma during pregnancy

description: Additional file 2: Enriched GO pathways (Total) in hypo-DMPs associated with DNA hypomethylation genes in the adenoma tissue of the non-pregnant patients.
DOI: 10.6084/m9.figshare.17126102.v1
title: Additional file 3 of Alterations of DNA methylation were associated with the rapid growth of cortisol-producing adrenocortical adenoma during pregnancy

description: Additional file 3: Enriched KEGG pathways (Total) in hypo-DMPs associated with DNA hypomethylation genes in the adenoma tissue of the non-pregnant patients.
DOI: 10.6084/m9.figshare.17126099
title: Additional file 2 of Alterations of DNA methylation were associated with the rapid growth of cortisol-producing adrenocortical adenoma during pregnancy

description: Additional file 2: Enriched GO pathways (Total) in hypo-DMPs associated with DNA hypomethylation genes in the adenoma tissue of the non-pregnant patients.
DOI: 10.6084/m9.figshare.17126111
title: Additional file 6 of Alterations of DNA methylation were associated with the rapid growth of cortisol-producing adrenocortical adenoma during pregnancy

description: Additional file 6: Enriched KEGG pathways (Total 30) within just the pregnant promoter hypomethylated DMPs associated genes.
DOI: 10.6084/m9.figshare.19219173.v1
title: Additional file 11 of Insights into glucosinolate accumulation and metabolic pathways in Isatis indigotica Fort.

description: Additional file 11: Table S1. LC-MS/MS fragment results of desulpho-GSLs.
DOI: 10.6084/m9.figshare.7164725
title: Additional file 3: of Integration of small RNAs and transcriptome sequencing uncovers a complex regulatory network during vernalization and heading stages of orchardgrass (Dactylis glomerata L.)

description: Table S11. The primers used for qRT-PCR. Table S12. Targets of miRNAs in the BV stage, VE stage, and AV stage. Table S13. Statistics for GO enrichment results. Table S14. DEGs in the VE-BV-UP vs AV-VE-DOWN and VE-BV-DOWN vs AV-VE-UP comparisons. Table S15. Concerned DEGs in the VE-BV, AV-VE, and HT-BH comparison. Table S16. The genes in the brown-module. Table S17. The targets of miR530. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.19219236
title: Additional file 21 of Insights into glucosinolate accumulation and metabolic pathways in Isatis indigotica Fort.

description: Additional file 21: Supplementary Data 2. Protein sequences of CYP79, CYP81F and CYP83 used for phylogenetic tree building in this study. This is the source file for Fig. S6. Detailed information can be found in Table S5c.
DOI: 10.6084/m9.figshare.17126114
title: Additional file 7 of Alterations of DNA methylation were associated with the rapid growth of cortisol-producing adrenocortical adenoma during pregnancy

description: Additional file 7: The detail interaction results of just pregnant promoter hypomethylated DMPs associated genes using the STRING software.
DOI: 10.6084/m9.figshare.15029796.v1
title: PAX6 upstream antisense RNA (PAUPAR) inhibits colorectal cancer progression through modulation of the microRNA (miR)-17-5p / zinc finger protein 750 (ZNF750) axis

description: Researchers have demonstrated that long non-coding RNAs (lncRNAs) are vital in colorectal cancer (CRC) progression. Here, we aimed to explore the function of lncRNA PAX6 upstream antisense RNA (PAUPAR) in the development of CRC. In the present study, PAUPAR and microRNA (miR)-17-5p expression levels in CRC tissues and cells were examined using quantitative real-time polymerase chain reaction (qRT-PCR). Western blot analysis was adopted to examine ZNF750 expression at the protein level in CRC cells. CRC cell proliferation was examined by colony formation experiment and 5-Bromo-2-deoxyUridine (BrdU) experiment. CRC cell migration and invasion were assessed by Transwell experiments. Apoptosis was measured using the TUNEL experiment. The targeting relationship between PAUPAR and miR-17-5p was confirmed using dual-luciferase reporter gene and RNA immunoprecipitation (RIP) experiments. We demonstrated that PAUPAR was markedly down-modulated in CRC, and its low expression was significantly related to increased T stage and local lymph node metastasis. Knockdown of PAUPAR enhanced CRC cell proliferation, migration and invasion, and restrained apoptosis relative to controls, whereas PAUPAR overexpression caused the opposite effects. Moreover, rescue experiments showed that miR-17-5p inhibitor could reverse the role of PAUPAR knockdown on the malignant phenotypes of CRC cells. Additionally, PAUPAR could positively regulate the expression of ZNF750 via repressing miR-17-5p. Taken together, these findings suggest that PAUPAR/miR-17-5p/ZNF750 axis is a novel mechanism implicated in CRC progression.
DOI: 10.6084/m9.figshare.7164686.v1
title: Additional file 1: of Integration of small RNAs and transcriptome sequencing uncovers a complex regulatory network during vernalization and heading stages of orchardgrass (Dactylis glomerata L.)

description: Table S1. Summary statistics of RNA sequencing in different samples. Table S2. Summary of transcriptome sequencing for D. glomerata. Table S3. Summary statistics of the quality of sRNA sequencing. Table S4. Summary statistics of sRNA sequencing in samples from different stages. Table S5. Summary statistics of sRNA mapping results. Table S6. Length distribution of total sRNA. Table S7. Summary statistics and Length distribution of known miRNAs and novel miRNAs. Table S8. Statistics of differentially expressed miRNAs. Table S9. The targets of differentially expressed miRNAs. Table S10. Statistics for significant DEGs. (XLSX 313 kb)
DOI: 10.6084/m9.figshare.19219173
title: Additional file 11 of Insights into glucosinolate accumulation and metabolic pathways in Isatis indigotica Fort.

description: Additional file 11: Table S1. LC-MS/MS fragment results of desulpho-GSLs.
DOI: 10.6084/m9.figshare.19219185
title: Additional file 14 of Insights into glucosinolate accumulation and metabolic pathways in Isatis indigotica Fort.

description: Additional file 14: Table S4. Identified TGG genes in 26 different Brassicaceae species. (a) Number of myrosinase gene homologs in 26 Brassicaceae species. (b) Homologous sequence names of myrosinase genes in 26 Brassicaceae species.
DOI: 10.6084/m9.figshare.19219182.v1
title: Additional file 13 of Insights into glucosinolate accumulation and metabolic pathways in Isatis indigotica Fort.

description: Additional file 13: Table S3. The identified genes and subcellular localization results. The lists are in an alphabetic arrangement.
DOI: 10.6084/m9.figshare.19219242
title: Additional file 22 of Insights into glucosinolate accumulation and metabolic pathways in Isatis indigotica Fort.

description: Additional file 22: Supplementary Data 3. Protein sequences of MAM and IPMS used for phylogenetic tree building in this study. This is the source file for Fig. S7. Detailed information can be found in Table S5d.
DOI: 10.6084/m9.figshare.17126210.v1
title: Additional file 3 of Combining QTL-seq and linkage mapping to uncover the genetic basis of single vs. paired spikelets in the advanced populations of two-ranked maize×teosinte

description: Additional file 3: Table S3. Genotypes and phenotypes of the mapping populations using traditional QTL mapping.
DOI: 10.6084/m9.figshare.19219242.v1
title: Additional file 22 of Insights into glucosinolate accumulation and metabolic pathways in Isatis indigotica Fort.

description: Additional file 22: Supplementary Data 3. Protein sequences of MAM and IPMS used for phylogenetic tree building in this study. This is the source file for Fig. S7. Detailed information can be found in Table S5d.
DOI: 10.6084/m9.figshare.17126122.v1
title: Additional file 5 of Epigenetic modifications potentially controlling the allelic expression of imprinted genes in sunflower endosperm

description: Additional file 5: Table S5. The summary of DMRs between embryo and endosperm.
DOI: 10.5281/zenodo.10613736
title: Quantifying variant contributions in cystic kidney disease using national-scale whole genome sequencing

description: Summary statistics from GWAS analyses in "Quantifying variant contributions in cystic kidney disease using national-scale whole genome sequencing" (https://doi.org/10.1101/2024.02.14.24302377)
DOI: 10.5281/zenodo.10613735
title: Quantifying variant contributions in cystic kidney disease using national-scale whole genome sequencing

description: Summary statistics from GWAS analyses in "Quantifying variant contributions in cystic kidney disease using national-scale whole genome sequencing" (https://doi.org/10.1101/2024.02.14.24302377)
DOI: 10.6084/m9.figshare.11359121.v2
title: Associations between air pollution and cardio-respiratory physiological measures in older adults exercising outdoors

description: We examined whether exercising indoors vs. outdoors reduced the cardio-respiratory effects of outdoor air pollution. Adults ≥55 were randomly assigned to exercise indoors when the Air Quality Health Index was ≥5 and outdoors on other days (intervention group, n = 37), or outdoors everyday (control group, n = 35). Both groups completed cardio-respiratory measurements before and after exercise for up to 10 weeks. Data were analyzed using linear mixed effect regression models. In the control group, an interquartile range increase in fine particulate matter (PM<sub>2.5</sub>) was associated with increases of 1.4% in heart rate (standard error (SE) = 0.7%) and 5.6% (SE = 2.6%) in malondialdehyde, and decreases of 5.6% (SE = 2.5%) to 16.5% (SE = 7.5%) in heart rate variability measures. While the hypothesized benefit of indoor vs. outdoor exercise could not be demonstrated due to an insufficient number of intervention days (n = 2), the study provides evidence of short-term effects of air pollution in older adults. ISRCTN #26552763.
DOI: 10.6084/m9.figshare.17126168
title: Additional file 2 of Comparative transcriptomic analysis of gonadal development and renewal in the ovoviviparous black rockfish (Sebastes schlegelii)

description: Additional file 2: Table S2. Information on the total raw reads and clean reads of 18 gonadal transcripts obtained at different developmental stages.
DOI: 10.15468/dl.ecx6nz
title: Occurrence Download

description: A dataset containing 24994 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Conyza sumatrensis (Retz.) E.Walker)"
 ]
}

 The dataset includes 24994 records from 386 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093072-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vhsj4q
title: Occurrence Download

description: A dataset containing 359 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Specimen)",
 "DatasetKey is one of (TTU Mammals Collection, MSB Mammal Collection (Arctos), Angelo State Natural History Collections (ASNHC) Mammal specimens (Arctos), Mammals Specimens, NEON Biorepository Mammal Collection (Fecal Samples), NEON Biorepository Mammal Collection (Hair Samples), FHSM Mammals Collection, NEON Biorepository Mammal Collection (Blood Samples), Tissues Specimens, NEON Biorepository Mammal Collection (DNA Extracts))",
 "Geometry POLYGON((-102.46175 38.15395,-103.12058 37.28115,-103.27262 36.67863,-102.11826 36.36893,-101.64412 35.41306,-100.64857 36.29009,-100.12489 34.96681,-99.88276 34.34177,-98.62705 33.88566,-97.91755 34.36993,-98.11463 35.31593,-98.03017 36.0367,-98.10337 36.81941,-98.13152 37.64716,-98.00764 38.47492,-98.33987 39.1619,-99.21267 39.80383,-99.93907 39.80383,-100.63731 39.98402,-101.06527 40.0347,-102.46175 38.15395))",
 "TaxonKey is one of (Neotoma floridana (Ord, 1818), Neotoma micropus Baird, 1855)",
 "Year 1992-2024"
 ]
}

 The dataset includes 359 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093077-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rw26y6
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhynchotechum longipes W.T.Wang"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093078-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.