cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/8xyyt9pwyk.2
title: Data for: Investigating Thrust-fault Growth and Segment Linkage Using Displacement Distribution Analysis in the Active Duzhanzi Thrust Fault Zone, Northern Tian Shan of China

description: Four excel files in supplementary materials presents all fault data. Each file of “along-fault displacement” contain two sheets. One sheet show the displacements of segments, and the other sheet show the summed displacements. The file of “D_max and fault length” contain two sheets to show the max displacements and fault length of segments in the DF2 and the DF3, respectively.
DOI: 10.17632/sxxmzcp66h.1
title: Data and Materials for: Preparedness Increases Confidence in Any Accessible Thoughts Affecting Evaluation Unrelated to the Original Domain of Preparation

description: Supplementary Materials and SAS data files for Studies 1-3. The first half of the SAS files include the Hayes Process Macro. The syntax and program commands for the specific data set can be found at the end of the file.
DOI: 10.17632/tb9t37w224.1
title: Data for: Representativity and applicability of small amounts of sediment samples in the determination of absolute diatom abundances (ADA): Evidence from an orbital shaking method

description: An introduction of the sediments used for the determination of absolute diatom abundance and the ADA estimates of these sediment subsamples are provided here.
DOI: 10.17632/tb9t37w224.2
title: Data for: Representativity and applicability of small amounts of sediment samples in the determination of absolute diatom abundances (ADA): Evidence from an orbital shaking method

description: An introduction of the sediments used for the determination of absolute diatom abundance and the ADA estimates of these sediment subsamples are provided here.
DOI: 10.17632/vmr9zdvrxw.1
title: Data for: Comparison of Sustainability Models in Development of Electric Vehicles in Tehran Using Fuzzy TOPSIS Method

description: Sustainability Models in Development of Electric Vehicles
DOI: 10.5061/dryad.0nj71g0/1
title: Phenol-chloroform extraction of DNA from avian museum specimens

description: A comprehensive phenol-chloroform protocol for extracting DNA from avian museum specimens. The protocol includes steps for tissue collection of toe pads, skin punches, and bones, and a step-by-step guide to the extraction protocol and a high ratio bead clean intended to maintain all fragments while removing impurities and PCR inhibitors.
DOI: 10.5061/dryad.95qd72v/1
title: Terapontid_PosteriorTrees_10k

description: A posterior distribution of 10,000 trees sampled from the broader distribution used in the *BEAST analysis
DOI: 10.5061/dryad.jj4g11s/61
title: Kras_10-4_132139_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based 10^-4 sample, replicate 3.
DOI: 10.5061/dryad.jj4g11s/62
title: Kras_10-3_132140_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based 10^-3 sample, replicate 1.
DOI: 10.5061/dryad.jj4g11s/63
title: Kras_10-3_132141_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based 10^-3 sample, replicate 2.
DOI: 10.5061/dryad.jj4g11s/64
title: Kras_10-3_132142_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based 10^-3 sample, replicate 3.
DOI: 10.5061/dryad.jj4g11s/65
title: Kras_10-2_132143_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based 10^-2 sample, replicate 1.
DOI: 10.5061/dryad.jj4g11s/66
title: Kras_10-2_132144_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based 10^-2 sample, replicate 2.
DOI: 10.5061/dryad.jj4g11s/67
title: Kras_10-2_132145_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based 10^-2 sample, replicate 3.
DOI: 10.5061/dryad.jj4g11s/68
title: Kras_10-1_132146_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based 10^-1 sample, replicate 1.
DOI: 10.5061/dryad.jj4g11s/69
title: Kras_10-1_132147_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based 10^-1 sample, replicate 2.
DOI: 10.5061/dryad.m4s0m08/1
title: Lake Ginninderra eDNA results

description: Individual samples, water volume filtered, DNA aliquots, PCR replicates, and target DNA detection and concentration results
DOI: 10.5061/dryad.m4s0m08/2
title: Lake Crescent and Lake Sorell eDNA results

description: Individual samples, water volume filtered, DNA aliquots, PCR replicates, and target DNA detection and concentration results
DOI: 10.5061/dryad.q4qd540/1
title: 00162_Steroidogenesis Data_DE71

description: Raw electronic data
DOI: 10.5061/dryad.q4qd540/2
title: PFOS-BDE dn Testosterone

description: Gonadal testosterone electronic data file,
DOI: 10.5061/dryad.v8j2vk5/12
title: Alignment containing HCV 1b full genomes and recombinant 2b/1b hemigenomes

description: All publicly available HCV 1b sequences were downloaded from GenBank and the Los Alamos National Laboratories (LANL). These were aligned with 2b/1b hemigenomes, representing the 1b portion of the coding region separated at the Recombination Detection Program (RDP)-inferred breakpoint, using the fast option in MAFFT version 7 in AliView and edited manually. Recombinant genomes were acquired from this study or these databases.
DOI: 10.5061/dryad.v8j2vk5/13
title: Alignment containing HCV 2b full genomes and recombinant 2b/1b hemigenomes

description: All publicly available HCV 2b sequences were downloaded from GenBank and the Los Alamos National Laboratories (LANL). These were aligned with 2b/1b hemigenomes, representing the 2b portion of the coding region separated at the Recombination Detection Program (RDP)-inferred breakpoint, using the fast option in MAFFT version 7 in AliView and edited manually. Recombinant genomes were acquired from this study or these databases.
DOI: 10.5061/dryad.v8j2vk5/14
title: Alignment containing HCV 1b full genomes and recombinant 2k/1b hemigenomes

description: All publicly available HCV 1b sequences were downloaded from GenBank and the Los Alamos National Laboratories (LANL). These were aligned with 2k/1b hemigenomes, representing the 1b portion of the coding region separated at the Recombination Detection Program (RDP)-inferred breakpoint, using the fast option in MAFFT version 7 in AliView and edited manually. Recombinant genomes were acquired from this study or these databases.
DOI: 10.5061/dryad.v8j2vk5/15
title: Alignment containing HCV 2k full genomes and recombinant 2k/1b hemigenomes

description: All publicly available HCV 2k sequences were downloaded from GenBank and the Los Alamos National Laboratories (LANL). These were aligned with 2k/1b hemigenomes, representing the 2k portion of the coding region separated at the Recombination Detection Program (RDP)-inferred breakpoint, using the fast option in MAFFT version 7 in AliView and edited manually. Recombinant genomes were acquired from this study or these databases.
DOI: 10.5061/dryad.v8j2vk5/16
title: 2b/1a and 1a IQ-Tree

description: Midpoint-rooted maximum likelihood (ML) phylogeny produced in IQ-Tree from fasta file containing all publicly available HCV 1a sequences and recombinant 2b/1a hemigenomes. All non-recombinant clades comprising 4 or more taxa are collapsed. Bootstrap support available as node labels.
DOI: 10.5061/dryad.v8j2vk5/17
title: 2b/1a, 2b/1b and 2b IQ-Tree

description: Midpoint-rooted maximum likelihood (ML) phylogeny produced in IQ-Tree from fasta file containing all publicly available HCV 2b sequences and recombinant 2b/1a and 2b/1b hemigenomes. All non-recombinant clades comprising 4 or more taxa are collapsed. Bootstrap support available as node labels.
DOI: 10.5061/dryad.v8j2vk5/18
title: 2k/1b and 2k IQ-Tree

description: Midpoint-rooted maximum likelihood (ML) phylogeny produced in IQ-Tree from fasta file containing all publicly available HCV 2k sequences and recombinant 2k/1b hemigenomes. All non-recombinant clades comprising 4 or more taxa are collapsed. Bootstrap support available as node labels.
DOI: 10.5061/dryad.v8j2vk5/19
title: 2k/1b, 2b/1b and 1b IQ-Tree

description: Midpoint-rooted maximum likelihood (ML) phylogeny produced in IQ-Tree from fasta file containing all publicly available HCV 1b sequences and recombinant 2k/1b and 2b/1b hemigenomes. All non-recombinant clades comprising 4 or more taxa are collapsed. Bootstrap support available as node labels.
DOI: 10.5061/dryad.v8j2vk5/20
title: 2k/1b Caucasus sensitivity analysis country of origin XML

description: XML for BEAST analysis on 2k/1b country of origin containing Armenia, Azerbaijan, and Georgia as a single geographic location. Performed on posterior distribution of trees from full coding region analysis with a single GTRΓ4 substitution model and a single uncorrelated relaxed lognormal clock.
DOI: 10.5061/dryad.vt66f3m/1
title: Python code for the individual-based simulations

description: Python code for the individual-based simulations in the paper "Why cooperation is not running away", published in the Journal of Evolutionary Biology, 2019, by Félix Geoffroy, Nicolas Baumard and Jean-Baptiste André. https://doi.org/10.1111/jeb.13508 If more details are needed on the code, please contact the first author of the publication at felix.geoffroy.fr@gmail.com.
DOI: 10.5441/001/1.1n4d187p
title: Data from: Dynamic body acceleration increases by 20% during flight ontogeny of greylag geese (Anser anser)

description: Gatt MC, Quetting M, Cheng Y, Wikelski M (2019) Dynamic body acceleration increases by 20% during flight ontogeny of greylag geese (Anser anser). Journal of Avian Biology. doi:10.1111/jav.02235
description: Despite our knowledge of the biophysical and behavioural changes during flight ontogeny in juvenile birds, little is known about the changes in the mechanical aspects of energy expenditure during early flight development, particularly in migratory species. Here, we investigate in a unique experimental setup how energy expended during flights changes over time beginning with early ontogeny. We calculate overall dynamic body acceleration (ODBA) as a proxy for energy expenditure in a group of hand raised Greylag Geese (Anser anser) trained to fly behind a microlight aircraft. We propose two potential hypotheses; energy expenditure either increases with increasing physiological suitability (the ‘physical development hypothesis’), or decreases as a result of behavioural improvements mitigating flight costs (the ‘behavioural development hypothesis’). There was a significant temporal increase of flight duration and ODBA over time, supporting the ‘physical development hypothesis’. This suggests that early on in flight ontogeny behavioural development leading to flight efficiency plays a weaker role in shaping ODBA changes than the increased physical ability to expend energy in flight. We discuss these findings and the implications of flight development on the life history of migratory species.
DOI: 10.5441/001/1.1n4d187p/1
title: MPIAB training flights of juvenile greylag geese-gps

description: Gatt MC, Quetting M, Cheng Y, Wikelski M (2019) Dynamic body acceleration increases by 20% during flight ontogeny of greylag geese (Anser anser). Journal of Avian Biology. doi:10.1111/jav.02235
description: Despite our knowledge of the biophysical and behavioural changes during flight ontogeny in juvenile birds, little is known about the changes in the mechanical aspects of energy expenditure during early flight development, particularly in migratory species. Here, we investigate in a unique experimental setup how energy expended during flights changes over time beginning with early ontogeny. We calculate overall dynamic body acceleration (ODBA) as a proxy for energy expenditure in a group of hand raised Greylag Geese (Anser anser) trained to fly behind a microlight aircraft. We propose two potential hypotheses; energy expenditure either increases with increasing physiological suitability (the ‘physical development hypothesis’), or decreases as a result of behavioural improvements mitigating flight costs (the ‘behavioural development hypothesis’). There was a significant temporal increase of flight duration and ODBA over time, supporting the ‘physical development hypothesis’. This suggests that early on in flight ontogeny behavioural development leading to flight efficiency plays a weaker role in shaping ODBA changes than the increased physical ability to expend energy in flight. We discuss these findings and the implications of flight development on the life history of migratory species.
DOI: 10.5441/001/1.1n4d187p/2
title: MPIAB training flights of juvenile greylag geese-acc

description: Gatt MC, Quetting M, Cheng Y, Wikelski M (2019) Dynamic body acceleration increases by 20% during flight ontogeny of greylag geese (Anser anser). Journal of Avian Biology. doi:10.1111/jav.02235
description: Despite our knowledge of the biophysical and behavioural changes during flight ontogeny in juvenile birds, little is known about the changes in the mechanical aspects of energy expenditure during early flight development, particularly in migratory species. Here, we investigate in a unique experimental setup how energy expended during flights changes over time beginning with early ontogeny. We calculate overall dynamic body acceleration (ODBA) as a proxy for energy expenditure in a group of hand raised Greylag Geese (Anser anser) trained to fly behind a microlight aircraft. We propose two potential hypotheses; energy expenditure either increases with increasing physiological suitability (the ‘physical development hypothesis’), or decreases as a result of behavioural improvements mitigating flight costs (the ‘behavioural development hypothesis’). There was a significant temporal increase of flight duration and ODBA over time, supporting the ‘physical development hypothesis’. This suggests that early on in flight ontogeny behavioural development leading to flight efficiency plays a weaker role in shaping ODBA changes than the increased physical ability to expend energy in flight. We discuss these findings and the implications of flight development on the life history of migratory species.
DOI: 10.5441/001/1.1n4d187p/3
title: MPIAB training flights of juvenile greylag geese-reference-data

description: Gatt MC, Quetting M, Cheng Y, Wikelski M (2019) Dynamic body acceleration increases by 20% during flight ontogeny of greylag geese (Anser anser). Journal of Avian Biology. doi:10.1111/jav.02235
description: Despite our knowledge of the biophysical and behavioural changes during flight ontogeny in juvenile birds, little is known about the changes in the mechanical aspects of energy expenditure during early flight development, particularly in migratory species. Here, we investigate in a unique experimental setup how energy expended during flights changes over time beginning with early ontogeny. We calculate overall dynamic body acceleration (ODBA) as a proxy for energy expenditure in a group of hand raised Greylag Geese (Anser anser) trained to fly behind a microlight aircraft. We propose two potential hypotheses; energy expenditure either increases with increasing physiological suitability (the ‘physical development hypothesis’), or decreases as a result of behavioural improvements mitigating flight costs (the ‘behavioural development hypothesis’). There was a significant temporal increase of flight duration and ODBA over time, supporting the ‘physical development hypothesis’. This suggests that early on in flight ontogeny behavioural development leading to flight efficiency plays a weaker role in shaping ODBA changes than the increased physical ability to expend energy in flight. We discuss these findings and the implications of flight development on the life history of migratory species.
DOI: 10.17632/5rv34hm7xj.1
title: Data for: Response characteristics of gradient data from the frequency-domain controlled-source electromagnetic method
DOI: 10.17632/pft8d338mn.4
title: Data for: Empirical fragility curves: The effect of uncertainty in ground motion intensity

description: The provided input data can be used with the (also provided) ‘R’ code in order to reproduce the empirical fragility curves and their credible intervals of the simplest and most complex model found in the accompanied research article [1]. The input data include a map of 405 municipalities affected by the 1980 Irpinia event. Information regarding the degree of damage sustained by the most as well as the least vulnerable building inventory is also included aggregated at municipality level. The ground motion intensity levels is included. Finally, existing information, which is independent of the 1980 Irpinia data, regarding the shape of fragility curves of the two examined buildings classes are provided.
DOI: 10.17632/pft8d338mn.5
title: Data for: Empirical fragility curves: The effect of uncertainty in ground motion intensity

description: The provided input data can be used with the (also provided) ‘R’ code in order to reproduce the empirical fragility curves and their credible intervals of the simplest and most complex model found in the accompanied research article [1]. The input data include a map of 405 municipalities affected by the 1980 Irpinia event. Information regarding the degree of damage sustained by the most as well as the least vulnerable building inventory is also included aggregated at municipality level. The ground motion intensity levels is included. Finally, existing information, which is independent of the 1980 Irpinia data, regarding the shape of fragility curves of the two examined buildings classes are provided.
DOI: 10.17632/ts6fwh97v3.1
title: Data for: Physicochemical constraints on the in-situ deposited phenoxazine mediated electron shuttling process

description: Data in manuscript of "Physicochemical constraints on the in-situ deposited phenoxazine mediated electron shuttling process"
DOI: 10.17632/wrtsypybfb.1
title: Data for: Site Specific Seismic Hazard Analysis of Krishna Raja Sagara Dam, India

description: The Earthquake data and the seismic sources used in the analysis are provided
DOI: 10.25952/5dd1c5ebc02f8
title: Beyond the Miracle Foal: A Study into the Persistent Effects of Gestational Immaturity in Horses

description: This data was collected for studies into the persistent effects of equine gestational immaturity manifest as adrenocortical, orthopaedic and behavioural adaptations. The adrenocortical data comprises salivary cortisol concentration values relating to an ACTH stimulation; orthopaedic data comprises anatomical measurements; behavioural data comprises salivary cortisol values, questionnaire responses, movement sensor data, algometric pressure data.
DOI: 10.5061/dryad.50t6j84/1
title: Sampling locations

description: Sampling locations are described as follows: latitude, longitude, mean annual temperature and annual precipitation of the collection sites. The number of genotyped individuals per population is also provided.
DOI: 10.5061/dryad.b8r04br/1
title: Rabdeau et al. 2019 - Data from: To change or not to change experimenters: Caveats for repeated behavioural and physiological measures in Montagu’s Harrier

description: Behavioural and physiological data
DOI: 10.5061/dryad.g5p9h7k/1
title: Food intake and reproduction data

description: Main data file: food intake and reproduction data at the level of individual spiders
DOI: 10.5061/dryad.g5p9h7k/2
title: Colony level data

description: Data at the level of individual spider colonies, e.g. colony sizes
DOI: 10.5061/dryad.g5p9h7k/3
title: Insect measurements

description: Data from trapping of insects to estimate food abundance
DOI: 10.5061/dryad.g5p9h7k/4
title: Additional data

description: Data at the level of field sites (e.g. spider density, average colony sizes, and food abundance) + Ambient temperature data + Data for correlating web sizes and spider body sizes
DOI: 10.5061/dryad.g5p9h7k/5
title: Validation of food intake

description: Data from second field experiment for validating food intake values (10 observations per day rather than 4 observations per day; estimation of prey sizes caught and biomass ingested)
DOI: 10.5061/dryad.jj4g11s/70
title: Kras_10-1_132148_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based 10^-1 sample, replicate 3.
DOI: 10.5061/dryad.jj4g11s/71
title: Kras_MUT_132150_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based mutant only sample, replicate 1.
DOI: 10.5061/dryad.jj4g11s/72
title: Kras_MUT_132151_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based mutant only sample, replicate 2.
DOI: 10.5061/dryad.jj4g11s/73
title: Kras_MUT_132152_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based mutant only sample, replicate 3.
DOI: 10.5061/dryad.jj4g11s/74
title: PCR_all_group_size_histo

description: A csv file containing data describing the number of groups with specified number of reads in the group for the PCR-based samples. The first column indicates the number of reads, the remaining column headers are the sample names, and the list of numbers under each name is the number of groups of specified read depth.
DOI: 10.5061/dryad.jj4g11s/75
title: PCR_all_group_read_lens_histo

description: A csv file of the read lengths for each PCR-based sample, with length as the row name and the number of reads with specified length for each sample across the columns. Column headers are the names of the samples.
DOI: 10.5061/dryad.jj4g11s/76
title: Kras_WT_132132_read_quals

description: A csv documenting the median qualities of each position for each tag group in PCR-based WT sample, replicate1. The header information is in the README.txt file.
DOI: 10.5061/dryad.jj4g11s/77
title: Kras_WT_132133_read_quals

description: A csv documenting the median qualities of each position for each tag group in PCR-based WT sample, replicate2. The header information is in the README.txt file.
DOI: 10.5061/dryad.jj4g11s/78
title: Kras_WT_132134_read_quals

description: A csv documenting the median qualities of each position for each tag group in PCR-based WT sample, replicate3. The header information is in the README.txt file.
DOI: 10.5061/dryad.kk2sd41/1
title: Gardiner- Habitat.Perception.Bettongs
DOI: 10.5061/dryad.pp419k6/1
title: Steno bredanensis, demographic and morphometric data from 2004 and 2005 Florida mass strandings
DOI: 10.5061/dryad.v8j2vk5/21
title: 2k/1b dense genome 1 GTRΓ4, 1 clock country of origin XML

description: XML for BEAST analysis on 2k/1b country of origin on posterior distribution of trees from densely sampled region analysis with a single GTRΓ4 substitution model and a single uncorrelated relaxed lognormal clock.
DOI: 10.5061/dryad.v8j2vk5/22
title: 2k/1b dense genome 4 GTRΓ4, 1 clock country of origin XML

description: XML for BEAST analysis on 2k/1b country of origin on posterior distribution of trees from densely sampled region analysis with four partitioned GTRΓ4 substitution models and a single uncorrelated relaxed lognormal clock.
DOI: 10.5061/dryad.v8j2vk5/23
title: 2k/1b dense genome 4 GTRΓ4, 4 clocks country of origin XML

description: XML for BEAST analysis on 2k/1b country of origin on posterior distribution of trees from densely sampled region analysis with four partitioned GTRΓ4 substitution models and four uncorrelated relaxed lognormal clocks.
DOI: 10.5061/dryad.v8j2vk5/24
title: 2k/1b full genome 1 GTRΓ4, 1 clock country of origin XML

description: XML for BEAST analysis on 2k/1b country of origin on posterior distribution of trees from full coding region analysis with a single GTRΓ4 substitution model and a single uncorrelated relaxed lognormal clock.
DOI: 10.5061/dryad.v8j2vk5/25
title: 2k/1b full genome 9 GTRΓ4, 1 clock country of origin XML

description: XML for BEAST analysis on 2k/1b country of origin on posterior distribution of trees from full coding region analysis with nine partitioned GTRΓ4 substitution models and a single uncorrelated relaxed lognormal clock.