cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j0qn65bb
title: CIL:46257, Homo sapiens. In Cell Image Library

description: Plate 26601 - Phenotypic profiling attempts to summarize multiparametric, feature-based analysis of cellular phenotypes of each sample so that similarities between profiles reflect similarities between samples. This image set provides a basis for testing image-based profiling methods wrt. to their ability to distinguish the effects of small molecules.
 
Images
The images are of U2OS cells treated with each of 1600 known bioactive compounds and labeled with six labels that characterize seven organelles (the .cell-painting. assay).
 
This pilot experiment consists of 20 plates. Each plate has 384 wells and each well has 9 fields of view for a total of 69,120 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale image file, so there are 345,600 image files in 16-bit TIFF format.
description: Gustafsdottir et al. (doi:10.1371/journal.pone.0080999) have developed a multiplex cytological profiling assay that "paints the cell" with as many fluorescent markers as possible without compromising our ability to extract rich, quantitative profiles in high throughput. The assay detects seven major cellular components. In a pilot screen of bioactive compounds, the assay detected a range of cellular phenotypes and it clustered compounds with similar annotated protein targets or chemical structure based on cytological profiles. The results demonstrate that the assay captures subtle patterns in the combination of morphological labels, thereby detecting the effects of chemical compounds even though their targets are not stained directly. This image-based assay provides an unbiased approach to characterize compound- and disease-associated cell states to support future probe discovery.

Using the cell-painting assay, the Broad Institute has assembled a reference dataset of profiles for U2OS osteosarcoma cells treated with ~30,000 compounds. The compound collection includes DOS-derived compounds (20,000), as well as chemically diverse MLI compounds with biologically diverse performance identified through analysis of PubChem (10,000), and known bioactive compounds to serve as landmarks (2,500). The DOS compounds consist of structurally diverse and stereochemically rich compounds with structures distinct from the current MLSMR. The compound collection also includes 267 distinct compounds nominated by MLPCN Centers from projects for which the Centers would like to identify new chemical series with similar activities.

The experiment consists of 413 microtiter plates. Each plate has 384 wells. Each well has 9 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale 16-bit TIFF image file.
DOI: 10.6075/j0jw8cg7
title: CIL:46265, Homo sapiens. In Cell Image Library

description: Gustafsdottir et al. (doi:10.1371/journal.pone.0080999) have developed a multiplex cytological profiling assay that "paints the cell" with as many fluorescent markers as possible without compromising our ability to extract rich, quantitative profiles in high throughput. The assay detects seven major cellular components. In a pilot screen of bioactive compounds, the assay detected a range of cellular phenotypes and it clustered compounds with similar annotated protein targets or chemical structure based on cytological profiles. The results demonstrate that the assay captures subtle patterns in the combination of morphological labels, thereby detecting the effects of chemical compounds even though their targets are not stained directly. This image-based assay provides an unbiased approach to characterize compound- and disease-associated cell states to support future probe discovery.

Using the cell-painting assay, the Broad Institute has assembled a reference dataset of profiles for U2OS osteosarcoma cells treated with ~30,000 compounds. The compound collection includes DOS-derived compounds (20,000), as well as chemically diverse MLI compounds with biologically diverse performance identified through analysis of PubChem (10,000), and known bioactive compounds to serve as landmarks (2,500). The DOS compounds consist of structurally diverse and stereochemically rich compounds with structures distinct from the current MLSMR. The compound collection also includes 267 distinct compounds nominated by MLPCN Centers from projects for which the Centers would like to identify new chemical series with similar activities.

The experiment consists of 413 microtiter plates. Each plate has 384 wells. Each well has 9 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale 16-bit TIFF image file.
description: Plate 25852 - Phenotypic profiling attempts to summarize multiparametric, feature-based analysis of cellular phenotypes of each sample so that similarities between profiles reflect similarities between samples. This image set provides a basis for testing image-based profiling methods wrt. to their ability to distinguish the effects of small molecules.
 
Images
The images are of U2OS cells treated with each of 1600 known bioactive compounds and labeled with six labels that characterize seven organelles (the .cell-painting. assay).
 
This pilot experiment consists of 20 plates. Each plate has 384 wells and each well has 9 fields of view for a total of 69,120 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale image file, so there are 345,600 image files in 16-bit TIFF format.
DOI: 10.15468/dl.trk5c9
title: Occurrence Download

description: A dataset containing 2285293481 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 2285293481 records from 15335 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009511-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qtdrf8
title: Occurrence Download

description: A dataset containing 6731 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amaranthus caudatus L."
 ]
}

 The dataset includes 6731 records from 366 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0236718-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rpa5b9
title: Occurrence Download

description: A dataset containing 148 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "StateProvince is Arizona",
 "TaxonKey is one of (Melandryidae, Tetratomidae)"
 ]
}

 The dataset includes 148 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0123679-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112050074
title: P.Oxy.VI 962 List or register of sheep/memorandum of contracts, P.Oxy.VI 962

description: [Text Description:] List/register of sheep, addressed to the state official. On the back, a memorandum concerning various contracts. ❧ [Text or Publication Number Note:] P.Oxy.VI 962, P.Oxy. 962, Spurlock 1914.21.0013 ❧ [Excavation Description:] Excavated by archaeologists, including Bernard Pyne Grenfell and Arthur Surridge Hunt, at an ancient rubbish dump near Oxyrhynchus in Egypt (28°32'N 30°40'E, modern el-Bahnasa). ❧ [Medium:] Parchment ❧ [Script Note:] Greek ❧ [Physical Object Description:] Papyrus manuscript, 11.5 x 6.1 cm.
DOI: 10.15468/dl.std3ye
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Candelacypris Baltanas, 2001"
 ]
}

 The dataset includes 26 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0232684-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vyhgkp
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gentiana urnula Harry Sm."
 ]
}

 The dataset includes 74 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239120-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112052050
title: Baal Myth Fifth Tablet

description: [Text Description:] Baal enters underworld, his body is discovered, El and Anat mourn him ❧ [Text or Publication Number Note:] KTU 1.5; CTA 5; CAT 1.5; KTU2 1.5; CTU 1.5; RS 2.[022]; RS 3.[565] ❧ [Excavation Description:] Excavations at Ras Shamra 1930. Found in Library of the High Priest, p. t. 210-264, Acropolis, excavated by Claude F.-A. Schaeffer, Mission Archeologique Francaise. ❧ [Medium:] Clay ❧ [Script Note:] Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet, 14.5 cm. X 15.6 cm., 6 fragments ❧ [Physical Object Note:] Grey clay, six columns, incomplete
DOI: 10.15468/dl.f3ysae
title: Occurrence Download

description: A dataset containing 428 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Scyphiphora hydrophylacea C.F.Gaertn."
 ]
}

 The dataset includes 428 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0236720-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dbs7es
title: Occurrence Download

description: A dataset containing 20961 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jatropha gossypiifolia L."
 ]
}

 The dataset includes 20961 records from 367 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0145717-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112022164
title: Cuneiform Tablet 1913.14.1504, Spurlock 1913.14.1504

description: [Text Description:] List of people and the amount remaining from contracts. ❧ [Text or Publication Number Note:] Spurlock 1913.14.1504; CDLI P421356 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish Gray (2.5Y 8.5/2) Light Brown (5YR 6/4) Medium Gray (N 5.5/ 24.6% R) ❧ [Physical Object Note:] 5.7 x 4.6 x 2.1 cm (52g)
DOI: 10.15468/dl.djd6hu
title: Occurrence Download

description: A dataset containing 641640 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Phragmites australis (Cav.) Trin. ex Steud.",
 "Year 1990-2023"
 ]
}

 The dataset includes 641640 records from 1452 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0235050-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.msnlc2
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000695-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kd6w3e
title: Occurrence Download

description: A dataset containing 848 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tapirus bairdii (Gill, 1865)"
 ]
}

 The dataset includes 848 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009188-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uoggpn
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013754-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hjvsyj
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000784-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dbqtmk
title: Occurrence Download

description: A dataset containing 207984 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Comptages Wetlands, dénombrements des oiseaux d'eau à la mi-janvier en France métropolitaine-Comptages Wetlands, dénombrements des Oiseaux d'eau à la mi-janvier en France métropolitaine"
 ]
}

 The dataset includes 207984 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023611-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gtvsot
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005783-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p3mtmq
title: Occurrence Download

description: A dataset containing 645103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Sweden",
 "DatasetKey is Phanerogamic Botanical Collections (S)"
 ]
}

 The dataset includes 645103 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008908-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6vknug
title: Occurrence Download

description: A dataset containing 1309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Larix potaninii Batalin"
 ]
}

 The dataset includes 1309 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023622-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qph1i6
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005756-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kq78np
title: Occurrence Download

description: A dataset containing 5842 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Continent is South America",
 "Continent is Europe",
 "Continent is Oceania",
 "Continent is Asia"
 ]
 },
 "TaxonKey is Ambrosia artemisiifolia L."
 ]
}

 The dataset includes 5842 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009016-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uhpd4z
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050880-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.79hvx9
title: Occurrence Download

description: A dataset containing 1994 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((6.60058 46.51445,6.59059 46.49966,6.62478 46.48925,6.63295 46.50633,6.60058 46.51445))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1994 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023629-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57967/hf/2517
title: GUIChat
DOI: 10.15468/dl.mhnkr3
title: Occurrence Download

description: A dataset containing 976653205 species occurrences available in GBIF matching the query:
{ }

 The dataset includes 976653205 records from 19276 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000763-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc3s1d9
title: CCDC 112480: Experimental Crystal Structure Determination

description: Related Article: P.Kirsch, M.Bremer, M.Heckmeier, K.Tarumi|1999|Angew.Chem.,Int.Ed.|38|1989|doi:10.1002/(SICI)1521-3773(19990712)38:13/14<1989::AID-ANIE1989>3.0.CO;2-K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3wy85
title: CCDC 116227: Experimental Crystal Structure Determination

description: Related Article: A.Grybat, S.Boomgaarden, W.Saak, H.Marsmann, M.Weidenbruch|1999|Angew.Chem.,Int.Ed.|38|2010|doi:10.1002/(SICI)1521-3773(19990712)38:13/14<2010::AID-ANIE2010>3.0.CO;2-T
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3wy96
title: CCDC 116228: Experimental Crystal Structure Determination

description: Related Article: A.Grybat, S.Boomgaarden, W.Saak, H.Marsmann, M.Weidenbruch|1999|Angew.Chem.,Int.Ed.|38|2010|doi:10.1002/(SICI)1521-3773(19990712)38:13/14<2010::AID-ANIE2010>3.0.CO;2-T
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3wyb7
title: CCDC 116229: Experimental Crystal Structure Determination

description: Related Article: A.Grybat, S.Boomgaarden, W.Saak, H.Marsmann, M.Weidenbruch|1999|Angew.Chem.,Int.Ed.|38|2010|doi:10.1002/(SICI)1521-3773(19990712)38:13/14<2010::AID-ANIE2010>3.0.CO;2-T
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3rw8z
title: CCDC 112321: Experimental Crystal Structure Determination

description: Related Article: R.Rovai, C.W.Lehmann, J.S.Bradley|1999|Angew.Chem.,Int.Ed.|38|2036|doi:10.1002/(SICI)1521-3773(19990712)38:13/14<2036::AID-ANIE2036>3.0.CO;2-Q
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3svb1
title: CCDC 113253: Experimental Crystal Structure Determination

description: Related Article: U.-H.Berlekamp, P.Jutzi, A.Mix, B.Neumann, H.-G.Stammler, W.W.Schoeller|1999|Angew.Chem.,Int.Ed.|38|2048|doi:10.1002/(SICI)1521-3773(19990712)38:13/14<2048::AID-ANIE2048>3.0.CO;2-C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3ty61
title: CCDC 114303: Experimental Crystal Structure Determination

description: Related Article: H.-J.Knolker, E.Baum, H.Goesmann, R.Klauss|1999|Angew.Chem.,Int.Ed.|38|2064|doi:10.1002/(SICI)1521-3773(19990712)38:13/14<2064::AID-ANIE2064>3.0.CO;2-W
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3v3wx
title: CCDC 114479: Experimental Crystal Structure Determination

description: Related Article: B.Rake, P.Muller, H.W.Roesky, I.Uson|1999|Angew.Chem.,Int.Ed.|38|2050|doi:10.1002/(SICI)1521-3773(19990712)38:13/14<2050::AID-ANIE2050>3.0.CO;2-L
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.