cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2170cp
title: CCDC 1883571: Experimental Crystal Structure Determination

description: Related Article: Glenda Yahely Ruelas-Álvarez,  Alicia Jaquelin CárdenasValenzuela,  Adriana Cruz,  Herbert Höpfl,  José de Jesús Campos Gaxiola,  Mario A. Rodríguez Rivera, Braulio Rodríguez-Molina|2019|Eur.J.Inorg.Chem.|2019|2707|doi:10.1002/ejic.201900244
DOI: 10.5517/ccdc.csd.cc2170dq
title: CCDC 1883572: Experimental Crystal Structure Determination

description: Related Article: Glenda Yahely Ruelas-Álvarez,  Alicia Jaquelin CárdenasValenzuela,  Adriana Cruz,  Herbert Höpfl,  José de Jesús Campos Gaxiola,  Mario A. Rodríguez Rivera, Braulio Rodríguez-Molina|2019|Eur.J.Inorg.Chem.|2019|2707|doi:10.1002/ejic.201900244
DOI: 10.5517/ccdc.csd.cc21n3zt
title: CCDC 1896176: Experimental Crystal Structure Determination

description: Related Article: Viktoria K. Muravieva,  Yakov M. Gayfulin,  Tatiana I. Lappi,  Vincent Dorcet,  Taisiya S. Sukhikh,  Pierric Lemoine,  Maxim R. Ryzhikov,  Yuri V. Mironov,  Stéphane Cordier, Nikolay Gennadievich Naumov|2019|Eur.J.Inorg.Chem.|2019|2685|doi:10.1002/ejic.201900198
DOI: 10.5517/ccdc.csd.cc21nr4m
title: CCDC 1896770: Experimental Crystal Structure Determination

description: Related Article: Viktoria K. Muravieva,  Yakov M. Gayfulin,  Tatiana I. Lappi,  Vincent Dorcet,  Taisiya S. Sukhikh,  Pierric Lemoine,  Maxim R. Ryzhikov,  Yuri V. Mironov,  Stéphane Cordier, Nikolay Gennadievich Naumov|2019|Eur.J.Inorg.Chem.|2019|2685|doi:10.1002/ejic.201900198
DOI: 10.5517/ccdc.csd.cc21pf28
title: CCDC 1897419: Experimental Crystal Structure Determination

description: Related Article: Jean-Francois Nierengarten,  Iwona Nierengarten,  Michel Holler,  Alix Sournia-Saquet,  Béatrice Delavaux-Nicot,  Enrico Leoni,  Filippo Monti, Nicola Armaroli|2019|Eur.J.Inorg.Chem.|2019|2665|doi:10.1002/ejic.201900335
DOI: 10.5517/ccdc.csd.cc21pf5c
title: CCDC 1897422: Experimental Crystal Structure Determination

description: Related Article: Jean-Francois Nierengarten,  Iwona Nierengarten,  Michel Holler,  Alix Sournia-Saquet,  Béatrice Delavaux-Nicot,  Enrico Leoni,  Filippo Monti, Nicola Armaroli|2019|Eur.J.Inorg.Chem.|2019|2665|doi:10.1002/ejic.201900335
DOI: 10.5517/ccdc.csd.cc21pf8g
title: CCDC 1897425: Experimental Crystal Structure Determination

description: Related Article: Jean-Francois Nierengarten,  Iwona Nierengarten,  Michel Holler,  Alix Sournia-Saquet,  Béatrice Delavaux-Nicot,  Enrico Leoni,  Filippo Monti, Nicola Armaroli|2019|Eur.J.Inorg.Chem.|2019|2665|doi:10.1002/ejic.201900335
DOI: 10.5517/ccdc.csd.cc21pfry
title: CCDC 1897440: Experimental Crystal Structure Determination

description: Related Article: Jean-Francois Nierengarten,  Iwona Nierengarten,  Michel Holler,  Alix Sournia-Saquet,  Béatrice Delavaux-Nicot,  Enrico Leoni,  Filippo Monti, Nicola Armaroli|2019|Eur.J.Inorg.Chem.|2019|2665|doi:10.1002/ejic.201900335
DOI: 10.25505/fiz.icsd.cc20nxrc
title: CSD 1867153: Experimental Crystal Structure Determination

description: Related Article: Alexandra A. Shmakova,  Tamara E. Romanova,  Nikolay B. Kompankov,  Pavel A. Abramov,  Maxim N. Sokolov|2019|Eur.J.Inorg.Chem.|2019|2543|doi:10.1002/ejic.201900209
DOI: 10.5517/ccdc.csd.cc1q20ph
title: CCDC 1580866: Experimental Crystal Structure Determination

description: Related Article: Alexandra A. Shmakova,  Tamara E. Romanova,  Nikolay B. Kompankov,  Pavel A. Abramov,  Maxim N. Sokolov|2019|Eur.J.Inorg.Chem.|2019|2543|doi:10.1002/ejic.201900209
DOI: 10.5517/ccdc.csd.cc21s848
title: CCDC 1900149: Experimental Crystal Structure Determination

description: Related Article: Jonathan Goldberg, Maike Blakely, Werner Kaminsky, Michael Heinekey|2019|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc21s859
title: CCDC 1900150: Experimental Crystal Structure Determination

description: Related Article: Jonathan Goldberg, Maike Blakely, Werner Kaminsky, Michael Heinekey|2019|CSD Communication|||
DOI: 10.6084/m9.figshare.14845026
title: Additional datasets for "Occasional paternal inheritance of the germline-restricted chromosome in songbirds"

description: For alignments of bicc1, pim3 and elavl4, 'alt' indicates the GRC paralog whereas 'h1' and 'h2' are the A-chromosomal paralogs.The alignment of grc_cas showed the concatenated sequence of multiple single-copy GRC loci.numt_SR12333 is the assembled nuclear mitochondrial DNA sequences from one captive zebra finch individual SR12333. <br>Additional details please see the manuscript.
DOI: 10.5517/ccdc.csd.cc1zrdty
title: CCDC 1839751: Experimental Crystal Structure Determination

description: Related Article: xiuyan wang|2019|CSD Communication|||
DOI: 10.6084/m9.figshare.14845026.v2
title: Additional datasets for "Occasional paternal inheritance of the germline-restricted chromosome in songbirds"

description: For alignments of bicc1, pim3 and elavl4, 'alt' indicates the GRC paralog whereas 'h1' and 'h2' are the A-chromosomal paralogs.The alignment of grc_cas showed the concatenated sequence of multiple single-copy GRC loci.numt_SR12333 is the assembled nuclear mitochondrial DNA sequences from one captive zebra finch individual SR12333. <br>Additional details please see the manuscript.
DOI: 10.6084/m9.figshare.14845026.v1
title: Additional datasets for "Occasional paternal inheritance of the germline-restricted chromosome in songbirds"

description: For alignments of bicc1, pim3 and elavl4, 'alt' indicates the GRC paralog whereas 'h1' and 'h2' are the A-chromosomal paralogs.The alignment of grc_cas showed the concatenated sequence of multiple single-copy GRC loci.<br>Additional details please see the manuscript.
DOI: 10.5517/ccdc.csd.cc21wqj6
title: CCDC 1903478: Experimental Crystal Structure Determination

description: Related Article: Johannes H. J. Berthel,  Maximilian W. Kuntze-Fechner, Udo Radius|2019|Eur.J.Inorg.Chem.|2019|2618|doi:10.1002/ejic.201900302
DOI: 10.5517/ccdc.csd.cc21wqk7
title: CCDC 1903479: Experimental Crystal Structure Determination

description: Related Article: Johannes H. J. Berthel,  Maximilian W. Kuntze-Fechner, Udo Radius|2019|Eur.J.Inorg.Chem.|2019|2618|doi:10.1002/ejic.201900302
DOI: 10.5517/ccdc.csd.cc21wql8
title: CCDC 1903480: Experimental Crystal Structure Determination

description: Related Article: Johannes H. J. Berthel,  Maximilian W. Kuntze-Fechner, Udo Radius|2019|Eur.J.Inorg.Chem.|2019|2618|doi:10.1002/ejic.201900302
DOI: 10.5517/ccdc.csd.cc1q20ng
title: CCDC 1580865: Experimental Crystal Structure Determination

description: Related Article: Alexandra A. Shmakova,  Tamara E. Romanova,  Nikolay B. Kompankov,  Pavel A. Abramov,  Maxim N. Sokolov|2019|Eur.J.Inorg.Chem.|2019|2543|doi:10.1002/ejic.201900209
DOI: 10.5517/ccdc.csd.cc292b5x
title: CCDC 2117398: Experimental Crystal Structure Determination

description: Related Article: Sicheng Li, Meiheng Lv, Jie Wang, Dongxiang Zhang, Zhangrun Xu, Xin-Dong Jiang|2022|Mat.Advs.|3|1254|doi:10.1039/D1MA01052B
DOI: 10.6084/m9.figshare.19095995
title: 18S_BLCA_ASV_table

description: This table contains all the 18S amplicons obtained after bioinformatic processing from two different projects on the gut microbiome of redfronted lemurs. For this project the datasets were subsetted. The R scripts for subsetting the data can found in https://github.com/tmurillocorrales/Redfrontedlemurs_gutmicrobiome/tree/main/18S_amplicons.
DOI: 10.6084/m9.figshare.19095995.v1
title: 18S_BLCA_ASV_table

description: This table contains all the 18S amplicons obtained after bioinformatic processing from two different projects on the gut microbiome of redfronted lemurs. For this project the datasets were subsetted. The R scripts for subsetting the data can found in https://github.com/tmurillocorrales/Redfrontedlemurs_gutmicrobiome/tree/main/18S_amplicons.
DOI: 10.5286/isis.e.rb2210126
title: The impact of building block aspect ratio on the hierarchical architecture of folded protein hydrogels

description: Hydrogels are 3D self-assembled self-supporting networks of cross-linked hydrophilic building blocks swollen by large volumes of water. we use folded globular proteins as hydrogel building blocks, in order to harness their intrinsic mechanical properties together with their biological functionality. Our ambitious goal is to obtain the underlying design principles of these gels, by gaining a cross-length scale understanding of the structural and mechanical properties of folded protein hydrogels. In this new proposal we aim to exploit building block aspect ratio to control hydrogel network formation, structure and mechanics, where aspect ratio describes the ratio of height and width of the engineered protein. Such insight will provide a powerful platform for controlling intermediate structure in hierarchical networks and a novel route to tuning hydrogels with tailored properties.
DOI: 10.5281/zenodo.5927810
title: Database for HF Transmitted Speech with Carrier Frequency Difference

description: This public database is designed for evaluation of carrier frequency difference estimation systems and is published as part of our paper "Open Range Pitch tracking for Carrier Frequency Difference<br> Estimation from HF Transmitted Speech". It consists of over 23 ours of real transmissions over HF links with a known carrier frequency shift during demodulation. To record the data we have set up a transmission system between our base station in Paderborn and several other distant base stations across Europe (see Fig. 4), transmitting utterances from the LibriSpeech corpus. Kiwi-software defined radio (SDR) devices at distant base stations were utilized to demodulate the received SSB HF signals and send the recorded audio signals back to our servers via a websocket connection. Audio markers had been added to the transmitted signal to allow for an automated time alignment between the transmitted<br> and received signals, easing the annotation and segmentation of the data.<br> For the transmissions a beacon, callsign DB0UPB, was used, which was supervised by a human to avoid interference with other ham radio stations. The HF signals are SSB modulated using the Lower Side Band (LSB) with a bandwidth of 2.7 kHz at carrier frequencies of 7.06 MHz − 7.063 MHz and 3.6 MHz − 3.62 MHz. To simulate a carrier frequency difference the demodulation frequency of the transmitter and the receiver were selected to differ by values from the set [0, 100, 300, 500, 1000]. Although the original speech samples have a sampling rate of 16 kHz, and the Kiwi-SDR samples the data at 12.001 Hz, the finally emitted data is band-limited to 2.7 kHz (International Telecommunication Union (ITU) regulations) which introduces a loss of the upper frequencies in case of LSB<br> transmission depending on the carrier frequency difference. The data set has a total size of 23:31 hours of which 3:28 hours contain speech activity.
DOI: 10.5281/zenodo.4485558
title: Database for HF Transmitted Speech with Carrier Frequency Difference

description: This public database is designed for evaluation of carrier frequency difference estimation systems and is published as part of our paper "Open Range Pitch tracking for Carrier Frequency Difference<br> Estimation from HF Transmitted Speech". It consists of over 23 ours of real transmissions over HF links with a known carrier frequency shift during demodulation. To record the data we have set up a transmission system between our base station in Paderborn and several other distant base stations across Europe (see Fig. 4), transmitting utterances from the LibriSpeech corpus. Kiwi-software defined radio (SDR) devices at distant base stations were utilized to demodulate the received SSB HF signals and send the recorded audio signals back to our servers via a websocket connection. Audio markers had been added to the transmitted signal to allow for an automated time alignment between the transmitted<br> and received signals, easing the annotation and segmentation of the data.<br> For the transmissions a beacon, callsign DB0UPB, was used, which was supervised by a human to avoid interference with other ham radio stations. The HF signals are SSB modulated using the Lower Side Band (LSB) with a bandwidth of 2.7 kHz at carrier frequencies of 7.06 MHz − 7.063 MHz and 3.6 MHz − 3.62 MHz. To simulate a carrier frequency difference the demodulation frequency of the transmitter and the receiver were selected to differ by values from the set [0, 100, 300, 500, 1000]. Although the original speech samples have a sampling rate of 16 kHz, and the Kiwi-SDR samples the data at 12.001 Hz, the finally emitted data is band-limited to 2.7 kHz (International Telecommunication Union (ITU) regulations) which introduces a loss of the upper frequencies in case of LSB<br> transmission depending on the carrier frequency difference. The data set has a total size of 23:31 hours of which 3:28 hours contain speech activity.
DOI: 10.5286/isis.e.rb2210126-1
title: The impact of building block aspect ratio on the hierarchical architecture of folded protein hydrogels

description: Hydrogels are 3D self-assembled self-supporting networks of cross-linked hydrophilic building blocks swollen by large volumes of water. we use folded globular proteins as hydrogel building blocks, in order to harness their intrinsic mechanical properties together with their biological functionality. Our ambitious goal is to obtain the underlying design principles of these gels, by gaining a cross-length scale understanding of the structural and mechanical properties of folded protein hydrogels. In this new proposal we aim to exploit building block aspect ratio to control hydrogel network formation, structure and mechanics, where aspect ratio describes the ratio of height and width of the engineered protein. Such insight will provide a powerful platform for controlling intermediate structure in hierarchical networks and a novel route to tuning hydrogels with tailored properties.
DOI: 10.5286/isis.e.rb2210202
title: Dissecting the molecular mechanisms of protecting and denaturing osmolytes on protein stability.

description: Extreme environments place severe physicochemical constraints on biological systems and significant perturbations to water.Biological organisms have adapted to environmental niches through a number of mechanisms. One important strategy involves the accumulation of organic solutes in the cell. Of particular interest to our group are the small organic molecules trimethylamine-N-oxide (TMAO) and urea. With NIMROD’s increased flux and developments in structural refinement we are now ideally placed to explore this fascinating system. Our aim is to study the hydration and association of a simple tri-peptide in binary and tertiary solutions of TMAO, urea and water. This will allows us to reveal the molecular mechanisms of protein (de)stabilisation of these important co-solutes, including determining if urea’s affinity for the tri-peptide is reduced in the presence of TMAO.
DOI: 10.5286/isis.e.rb2210202-1
title: Dissecting the molecular mechanisms of protecting and denaturing osmolytes on protein stability.

description: Extreme environments place severe physicochemical constraints on biological systems and significant perturbations to water.Biological organisms have adapted to environmental niches through a number of mechanisms. One important strategy involves the accumulation of organic solutes in the cell. Of particular interest to our group are the small organic molecules trimethylamine-N-oxide (TMAO) and urea. With NIMROD’s increased flux and developments in structural refinement we are now ideally placed to explore this fascinating system. Our aim is to study the hydration and association of a simple tri-peptide in binary and tertiary solutions of TMAO, urea and water. This will allows us to reveal the molecular mechanisms of protein (de)stabilisation of these important co-solutes, including determining if urea’s affinity for the tri-peptide is reduced in the presence of TMAO.
DOI: 10.15129/87679294-03e5-4e53-84ce-fcae7e63c597
title: Supplementary material for: "An investigation into the behavior of non-isodense particles in chaotic thermovibrational flow"

description: The files appended with .xlsx can be visualized on Matlab or MS Excel, Many Figures were produced by visualizing the Kinematic Cloud Block in Paraview. Simply click on the .foam files to visualise the data set. Note: Paraview must be installed.
DOI: 10.6084/m9.figshare.19096029
title: Analysis code from Inconsistent evolution and growth-survival tradeoffs in <i>Gambusia affinis</i>

description: Growth-survival tradeoffs may be a generalizable mechanism influencing trajectories of prey evolution. Here, we investigate evolutionary contributions to growth and survival in western mosquitofish (<i>Gambusia affinis</i>) from 10 populations from high- and low-predation ancestral environments. We assess (i) the degree to which evolutionary components of growth and survival are consistent or inconsistent across populations within ancestral predation environments, and (ii) whether growth and survival tradeoff at the population level. We measure growth and survival on groups of common-reared mosquitofish in pond mesocosms. We find that evolution of growth is consistent, with fish from low-predation ancestral environments showing higher growth, while the evolution of survival is inconsistent, with significant population-level divergence unrelated to ancestral predation environment. Such inconsistency prevents a growth-survival tradeoff across populations. Thus, the generalizability of contemporary evolution likely depends on local context of evolutionary tradeoffs, and a continued focus on singular selective agents (e.g. predators) without such local context will impede insights into generalizable evolutionary patterns.
DOI: 10.6084/m9.figshare.19096029.v1
title: Analysis code from Inconsistent evolution and growth-survival tradeoffs in <i>Gambusia affinis</i>

description: Growth-survival tradeoffs may be a generalizable mechanism influencing trajectories of prey evolution. Here, we investigate evolutionary contributions to growth and survival in western mosquitofish (<i>Gambusia affinis</i>) from 10 populations from high- and low-predation ancestral environments. We assess (i) the degree to which evolutionary components of growth and survival are consistent or inconsistent across populations within ancestral predation environments, and (ii) whether growth and survival tradeoff at the population level. We measure growth and survival on groups of common-reared mosquitofish in pond mesocosms. We find that evolution of growth is consistent, with fish from low-predation ancestral environments showing higher growth, while the evolution of survival is inconsistent, with significant population-level divergence unrelated to ancestral predation environment. Such inconsistency prevents a growth-survival tradeoff across populations. Thus, the generalizability of contemporary evolution likely depends on local context of evolutionary tradeoffs, and a continued focus on singular selective agents (e.g. predators) without such local context will impede insights into generalizable evolutionary patterns.
DOI: 10.6084/m9.figshare.19096032.v1
title: Experimental data from growth mesocosms from Inconsistent evolution and growth-survival tradeoffs in <i>Gambusia affinis</i>

description: Growth-survival tradeoffs may be a generalizable mechanism influencing trajectories of prey evolution. Here, we investigate evolutionary contributions to growth and survival in western mosquitofish (<i>Gambusia affinis</i>) from 10 populations from high- and low-predation ancestral environments. We assess (i) the degree to which evolutionary components of growth and survival are consistent or inconsistent across populations within ancestral predation environments, and (ii) whether growth and survival tradeoff at the population level. We measure growth and survival on groups of common-reared mosquitofish in pond mesocosms. We find that evolution of growth is consistent, with fish from low-predation ancestral environments showing higher growth, while the evolution of survival is inconsistent, with significant population-level divergence unrelated to ancestral predation environment. Such inconsistency prevents a growth-survival tradeoff across populations. Thus, the generalizability of contemporary evolution likely depends on local context of evolutionary tradeoffs, and a continued focus on singular selective agents (e.g. predators) without such local context will impede insights into generalizable evolutionary patterns.
DOI: 10.6084/m9.figshare.19096032
title: Experimental data from growth mesocosms from Inconsistent evolution and growth-survival tradeoffs in <i>Gambusia affinis</i>

description: Growth-survival tradeoffs may be a generalizable mechanism influencing trajectories of prey evolution. Here, we investigate evolutionary contributions to growth and survival in western mosquitofish (<i>Gambusia affinis</i>) from 10 populations from high- and low-predation ancestral environments. We assess (i) the degree to which evolutionary components of growth and survival are consistent or inconsistent across populations within ancestral predation environments, and (ii) whether growth and survival tradeoff at the population level. We measure growth and survival on groups of common-reared mosquitofish in pond mesocosms. We find that evolution of growth is consistent, with fish from low-predation ancestral environments showing higher growth, while the evolution of survival is inconsistent, with significant population-level divergence unrelated to ancestral predation environment. Such inconsistency prevents a growth-survival tradeoff across populations. Thus, the generalizability of contemporary evolution likely depends on local context of evolutionary tradeoffs, and a continued focus on singular selective agents (e.g. predators) without such local context will impede insights into generalizable evolutionary patterns.
DOI: 10.6084/m9.figshare.19096038
title: Experimental data from survival mesocosms from Inconsistent evolution and growth-survival tradeoffs in <i>Gambusia affinis</i>

description: Growth-survival tradeoffs may be a generalizable mechanism influencing trajectories of prey evolution. Here, we investigate evolutionary contributions to growth and survival in western mosquitofish (<i>Gambusia affinis</i>) from 10 populations from high- and low-predation ancestral environments. We assess (i) the degree to which evolutionary components of growth and survival are consistent or inconsistent across populations within ancestral predation environments, and (ii) whether growth and survival tradeoff at the population level. We measure growth and survival on groups of common-reared mosquitofish in pond mesocosms. We find that evolution of growth is consistent, with fish from low-predation ancestral environments showing higher growth, while the evolution of survival is inconsistent, with significant population-level divergence unrelated to ancestral predation environment. Such inconsistency prevents a growth-survival tradeoff across populations. Thus, the generalizability of contemporary evolution likely depends on local context of evolutionary tradeoffs, and a continued focus on singular selective agents (e.g. predators) without such local context will impede insights into generalizable evolutionary patterns.