cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/stq-nmv-xq3
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tyt-361-lv8
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0q1-rx2-20c
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0a4-fvc-hrc
title: Lingula Bruguière, 1791

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.9fjz46
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nematoda",
 "DatasetKey is Système d'Information sur la Nature et les Paysages d'Ile de France - Données du naturaliste ducourneau philippe provenant de la base de donnée du SINP Île-de-France CETTIA",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0212473-230224095556074/datasets/export for details.
DOI: 10.15468/dl.9r9xkd
title: Occurrence Download

description: A dataset containing 3367 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cymopterus lemmonii (J.M.Coult. & Rose) Dorn"
 ]
}

 The dataset includes 3367 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096585-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11156916
title: GeneMAP

description: Metabolic gene function discovery platform GeneMAP identifies SLC25A48 as necessary for mitochondrial choline import


Artem Khan1, Gokhan Unlu1, Phillip Lin2, Yuyang Liu1, Ece Kilic1, Timothy C. Kenny1, Kıvanç Birsoy1*, and Eric R. Gamazon2,3*

1 Laboratory of Metabolic Regulation and Genetics, The Rockefeller University, New York, NY, USA 2 Division of Genetic Medicine, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA 3 Vanderbilt Genetics Institute, Vanderbilt University, Nashville, TN, USA

*Correspondence: kbirsoy@rockefeller.edu, eric.gamazon@vumc.org

Organisms maintain metabolic homeostasis through the combined functions of small molecule transporters and enzymes. While many of the metabolic components have been well-established, a substantial number remains without identified physiological substrates. To bridge this gap, we have leveraged large-scale plasma metabolome genome-wide association studies (GWAS) to develop a multiomic Gene-Metabolite Associations Prediction (GeneMAP) discovery platform. GeneMAP can generate accurate predictions and even pinpoint genes that are distant from the variants implicated by GWAS. In particular, our analysis identified SLC25A48 as a genetic determinant of plasma choline levels. Mechanistically, SLC25A48 loss strongly impairs mitochondrial choline import and synthesis of its downstream metabolite, betaine. Integrative rare variant and polygenic score analyses provide strong evidence that the SLC25A48 causal effects on human disease may in part be mediated by the effects of choline. Altogether, our study provides a discovery platform for metabolic gene function and proposes SLC25A48 as a mitochondrial choline transporter.

 
description: Please cite: 

Khan, A., Unlu, G., Lin, P., Liu, Y., Kilic, E., Kenny, T.C., Birsoy, K., and Gamazon, E.R. (2024). Metabolic gene function discovery platform GeneMAP identifies SLC25A48 as necessary for mitochondrial choline import. Nature Genetics. In press. 

Khan, A., Lin, P., Birsoy, K., & Gamazon, E.R. (2024). GeneMAP (Version v1) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.11156917

 
description: GeneMAP platform can be accessed at:  https://gamazonlab.shinyapps.io/GeneMAP/
DOI: 10.6084/m9.figshare.26012821
title: uCT data P spumarius ontogeny.xlsx

description: Morphological measurements of the cibarial pump of Philaenus spumarius, taken from micro CT scans of 3rd, 4th, 5th instar nymphs and adult bugs. Data are associated with the paper "Born suckers: the cibarial pump of <i>Philaenus spumarius</i> scales across ontogeny to ensure functional equivalence" in the Journal of Experimental Biology
DOI: 10.6084/m9.figshare.26012821.v1
title: uCT data P spumarius ontogeny.xlsx

description: Morphological measurements of the cibarial pump of Philaenus spumarius, taken from micro CT scans of 3rd, 4th, 5th instar nymphs and adult bugs. Data are associated with the paper "Born suckers: the cibarial pump of <i>Philaenus spumarius</i> scales across ontogeny to ensure functional equivalence" in the Journal of Experimental Biology
DOI: 10.15468/dl.t2yhyw
title: Occurrence Download

description: A dataset containing 3130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Panstrongylus megistus (Burmeister, 1835)",
 "Year 1880-2010"
 ]
}

 The dataset includes 3130 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010761-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fvq9zb
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudoconnarus agelaefolius Cuatrec."
 ]
}

 The dataset includes 15 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096566-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uyp6s6
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monticalia schultzei (Cuatrec.) B.Nord."
 ]
}

 The dataset includes 11 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043358-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uydxkg
title: Occurrence Download

description: A dataset containing 237040 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((17.96 -33.336,18.265 -33.336,18.265 -33.062,17.96 -33.062,17.96 -33.336))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 237040 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0212462-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.djxs8w
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liparis amesiana Schltr."
 ]
}

 The dataset includes 17 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010764-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p4kn5m
title: Occurrence Download

description: A dataset containing 224 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Montiopsis capitata (Hook. & Arn.) D.I.Ford"
 ]
}

 The dataset includes 224 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043366-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25vuhc
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudocymopterus longiradiatus Mathias, Constance & W.L.Theob."
 ]
}

 The dataset includes 94 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096583-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hen6tp
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liparis arnoglossophylla (Rchb.f.) Hemsl."
 ]
}

 The dataset includes 79 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010805-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.967rzb
title: Occurrence Download

description: A dataset containing 5485 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lomandra micrantha (Endl.) Ewart"
 ]
}

 The dataset includes 5485 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012890-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffedxz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nematoda",
 "DatasetKey is Données de l'association Indre Nature - Données faune Indre Nature 2016-2017",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0212474-230224095556074/datasets/export for details.
DOI: 10.15468/dl.yangza
title: Occurrence Download

description: A dataset containing 561 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudoconnarus macrophyllus (Poepp.) Radlk."
 ]
}

 The dataset includes 561 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096569-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4qu7cr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nematoda",
 "DatasetKey is Inventaires naturalistes et gestion des espaces naturels du foncier privé d'EDF-Données CEN M-P - EDF",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0212477-230224095556074/datasets/export for details.
DOI: 10.15468/dl.uhk7pe
title: Occurrence Download

description: A dataset containing 3818 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lomandra nana (A.T.Lee) A.T.Lee"
 ]
}

 The dataset includes 3818 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012899-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g9rzsk
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neottia flabellata (W.W.Sm.) Szlach."
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046603-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wfg94n
title: Occurrence Download

description: A dataset containing 5275 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Field Museum of Natural History (Zoology) Mammal Collection",
 "TaxonKey is Primates"
 ]
}

 The dataset includes 5275 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096588-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nrp8sw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nematoda",
 "DatasetKey is CLICNAT- Base de données naturaliste picarde-Données de terrain du CPIE des Pays de l'Aisne",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0212481-230224095556074/datasets/export for details.
DOI: 10.15468/dl.rykzwz
title: Occurrence Download

description: A dataset containing 928 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Montrichardia linifera (Arruda) Schott"
 ]
}

 The dataset includes 928 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043389-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vrzky7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nematoda",
 "DatasetKey is Extension du Center Parcs des Bois Francs - Données biodiversité étudiées sur le site du Center Parcs de Bois Francs",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0212475-230224095556074/datasets/export for details.
DOI: 10.15468/dl.ua9gdd
title: Occurrence Download

description: A dataset listing the 356198 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 356198 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010751-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5pd6g8
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudodicliptera coursii Benoist"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096591-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qz95fn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nematoda",
 "DatasetKey is Projet Photovoltaïque Lac de Longchamps - Données brutes faune flore Lac de longchamps",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0212483-230224095556074/datasets/export for details.
DOI: 10.15468/dl.yuz8nk
title: Occurrence Download

description: A dataset containing 238 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lomandra maritima T.S.Choo"
 ]
}

 The dataset includes 238 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012888-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gdzeya
title: Occurrence Download

description: A dataset containing 391 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nerisyrenia linearifolia (S.Watson) Greene"
 ]
}

 The dataset includes 391 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047325-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tgvfbh
title: Occurrence Download

description: A dataset containing 641 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-85.58987 -0.76845,-57.47940 -0.76845,-57.47940 10.48155,-85.58987 10.48155,-85.58987 -0.76845))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eichhornia crassipes (Mart.) Solms",
 "Year 1837-2023"
 ]
}

 The dataset includes 641 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096609-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6a8t4v
title: Occurrence Download

description: A dataset listing the 108 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vulpes Frisch, 1775"
 ]
}

 The dataset's 108 records were derived from 2670 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048433-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc6tjk2
title: CCDC 203284: Experimental Crystal Structure Determination

description: Related Article: G.J.Bodwell, J.N.Bridson, M.K.Cyranski, J.W.J.Kennedy, T.M.Krygowski, M.R.Mannion, D.O.Miller|2003|J.Org.Chem.|68|2089|doi:10.1021/jo0206059
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5ykj5
title: CCDC 177367: Experimental Crystal Structure Determination

description: Related Article: R.Dhawan, Faming Jiang, G.P.A.Yap, R.K.Pomeroy|2003|J.Cluster Sci.|14|9|doi:10.1023/A:1022945306646
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc711fq
title: CCDC 209542: Experimental Crystal Structure Determination

description: Related Article: C.Gonzalez, M.Carballido, L.Castedo|2003|J.Org.Chem.|68|2248|doi:10.1021/jo026692m
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5ykk6
title: CCDC 177368: Experimental Crystal Structure Determination

description: Related Article: R.Dhawan, Faming Jiang, G.P.A.Yap, R.K.Pomeroy|2003|J.Cluster Sci.|14|9|doi:10.1023/A:1022945306646
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4j9mk
title: CCDC 134838: Experimental Crystal Structure Determination

description: Related Article: H.W.Roesky, R.J.Butcher, S.Bajpai, P.C.Srivastava|2000|Phosphorus,Sulfur,Silicon,Relat.Elem.|161|135|doi:10.1080/10426500008042101
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3rztm
title: CCDC 112431: Experimental Crystal Structure Determination

description: Related Article: R.Fiesel, J.Huber, U.Apel, V.Enkelmann, R.Hentschke, U.Scherf|1997|Macromol.Chem.Phys.|198|2623|doi:10.1002/macp.1997.021980901
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.17345189
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Jiří Danihelka, https://orcid.org/0000-0002-2640-7867. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
DOI: 10.5517/cc5zf8t
title: CCDC 178196: Experimental Crystal Structure Determination

description: Related Article: S.Bera, V.Nair|2002|Tetrahedron|58|4865|doi:10.1016/S0040-4020(02)00430-1
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5zf9v
title: CCDC 178197: Experimental Crystal Structure Determination

description: Related Article: S.Bera, V.Nair|2002|Tetrahedron|58|4865|doi:10.1016/S0040-4020(02)00430-1
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc632y9
title: CCDC 181720: Experimental Crystal Structure Determination

description: Related Article: R.S.Rarig Junior, J.Zubieta|2002|Inorg.Chim.Acta|340|211|doi:10.1016/S0020-1693(02)01055-1
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.