cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.jx9glr
title: Occurrence Download

description: A dataset containing 527982016 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Living Specimen"
 ]
 },
 {
 "or" : [
 "License is CC0 1.0",
 "License is CC-BY 4.0"
 ]
 }
 ]
}

 The dataset includes 527982016 records from 9757 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097648-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18150/tqxqoe
title: Part of the raw dielectric measurement data for manuscript: Insights into the nature of phase transitions and relaxation dynamics in memantine - An active substance forming orientationally disordered crystals

description: The dataset contains part of the raw dielectric measurement data, presented in the manuscript entitled "Insights into the nature of phase transitions and relaxation dynamics in memantine - An active substance forming orientationally disordered crystals". In this work, differential scanning calorimetry, together with X-ray diffraction, infrared, Raman, and broadband dielectric spectroscopy were employed to get a comprehensive insight into the nature of phase transitions, as well as the inter- and intramolecular dynamics in active substance − memantine (MEM). Our studies indicated that during cooling, MEM undergoes a transition from the liquid phase to the plastic crystal (PC(I)) phase. Meanwhile, upon the heating cycle, a transition between the PC(I) and PC(II) phases occurs before reaching the melting point. Moreover, calorimetric experiments revealed a glass transition at much lower temperatures during both thermal protocols. Notably, in-depth analysis of infrared and dielectric data measured in a wide temperature range showed that the intra- and intermolecular dynamics of MEM reveal no significant changes during cooling and only slight variations during the heating cycle. Moreover, dielectric studies indicated multiple relaxation modes in the loss spectra of the examined compound, including the presence of a Debye (D)-process, which exhibits a quite notable time-scale separation from the structural relaxation. Keeping in mind the relatively simple chemical structure of MEM, we assigned this mode to the breakup of H-bonds followed by the rotation of the whole molecule and reformation of this kind of specific interaction, which stays in line with the transient-chain model, proposed to explain the molecular nature of D-relaxation in monohydroxy alcohols. Finally, we found that the merging/splitting of structural and secondary processes occurs at a particularly long α-relaxation time (τα), contrary to typical glass formers, where this phenomenon is observed for much shorter τα.
DOI: 10.15468/dl.cd5mxf
title: Occurrence Download

description: A dataset containing 2483 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Lathyrus odoratus L."
 ]
}

 The dataset includes 2483 records from 257 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010939-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/a11y1v
title: A15_27376.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/3c6079ea-f1df-47e6-bffa-349f9e6489ba'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/3c6079ea-f1df-47e6-bffa-349f9e6489ba
DOI: 10.7910/dvn/o4jz1k
title: Can peroperative autofluorescence save parathyroid glands during thyroid surgery? Original study about autofluorescence screening with surgical oversight of the specimen of thyroidectomy before sending them to pathologist.

description: Objective: The aim of this original study was to determine the number of parathyroid glands that could have been saved and re implanted thanks to autofluorescence checking during thyroid surgery. 
Summary background data: Preservation of the parathyroid function reminds challenging during the thyroid surgery. These glands must be recognized and immediately autotransplant in case of devascularization. Near-infrared autofluorescence of parathyroid glands has recently been proposed to help the surgeon during his dissection.
Methods: 116 thyroid lobectomies have been performed on 70 consecutive adult patients. Each specimen of lobectomy has been scanned in vitro with an autofluorescence imaging device. Every spot of autofluorescence was study by this surgeon and then by the pathologist. The pathologist proceeded to a complete study of the rest of the lobe. We compare the results of macroscopical and microscopical diagnosis. 
Results: On the specimens, 24 fluorescent spots have been detected: 13 considered as parathyroid tissue for the surgeon and 11 considered as non parathyroid tissue. The pathologist exactly confirmed the surgical diagnosis but discovered 15 more hidden glands. 
Conclusions: Autofluorescence screening of the surgical specimen of thyroidectomy with surgical oversight is safe, quick, non invasive and it can avoid the accidental removal of parathyroid glands. About sixty per cent of these glands can be save and then autotransplanted during the surgery.
DOI: 10.6084/m9.figshare.27394875
title: Dataset: Henry’s Constant and Vapor Pressure for 30 Per- and Polyfluoroalkyl Substances (PFAS): Considerations for Vapor Intrusion Investigations

description: This data repository contains the data, Python scripts, and results from a study assessing the vapor intrusion potential of 30 PFAS compounds.
DOI: 10.7910/dvn/o7cvpp
title: A87_1421.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/76a5ed66-4948-a16d-ac41-763f85f997de'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/76a5ed66-4948-a16d-ac41-763f85f997de
DOI: 10.7910/dvn/a7ijnc
title: A15_28484.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/63154ded-595d-49bb-9d75-e24613e5cd67'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/63154ded-595d-49bb-9d75-e24613e5cd67
DOI: 10.7910/dvn/nzjnku
title: A16_32053.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/47aa355a-08f3-4e20-a2fd-d5ee5feeb346'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/47aa355a-08f3-4e20-a2fd-d5ee5feeb346
DOI: 10.71569/z0m6-cm53
title: Original soil data in the manuscript: Muñoz-Cerro, E.; Garcia-Duro, J.; Martínez-Ruiz, C.; López-Marcos, D. N2-fixing shrubs as nature-based solutions to store soil nutrients in grazed post-mining pastures of northern Spain. Under review in CATENA.

description: Description: basic data of mine soils in post-mining pastures under different treatments as a result of the combination of presence/absence of shrubs and presence/absence of livestock.
This paper highlights the role of native legume shrubs in mitigating the negative effects of grazing on soil degradation in post-mining Mediterranean pastures, helping to maintain soil nutrient storage levels similar to those found in the absence of grazing. This is evident in the C:N:P stoichiometry and stocks of C-N-P and exchangeable cations, such as K+ and Mg+2. The findings suggest that shrubs can be as effective as livestock exclusion in maintaining soil nutrient cycling processes and that management strategies should consider both grazing and shrubland dynamics to optimize nutrient cycling in these degraded environments.
DOI: 10.7910/dvn/a6fk84
title: A11_20194.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/251ceaa7-a5a4-4dfa-8dd2-e30d72cadfa9'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/251ceaa7-a5a4-4dfa-8dd2-e30d72cadfa9
DOI: 10.6084/m9.figshare.28912115
title: 20250505_Lieberetal_Figure7_RawBiofilmMicroscopyImages

description: <b>FIGURE 7. </b><b><i>S. mutans</i></b><b> biofilm formation is disrupted by HOSCN.</b> 3D reconstructions (<b>A-C</b>) of biofilm z-stacks (left) along with maximum intensity projections (right) of biofilms with (bottom) and without (top) 75 μM HOSCN added. Cascade blue (blue) was used to visualize the matrix of the biofilm in all images. (<b>A</b>) <i>S. sanguinis </i>WT expressing mTFP1 (green), (<b>B</b>) <i>S. sanguinis ∆har</i> expressing mTFP1 (green), and (<b>C</b>) <i>S. mutans</i> expressing mCherry (red).
DOI: 10.6084/m9.figshare.28912115.v2
title: 20250505_Lieberetal_Figure7_RawBiofilmMicroscopyImages

description: <b>FIGURE 7. </b><b><i>S. mutans</i></b><b> biofilm formation is disrupted by HOSCN.</b> 3D reconstructions (<b>A-C</b>) of biofilm z-stacks (left) along with maximum intensity projections (right) of biofilms with (bottom) and without (top) 75 μM HOSCN added. Cascade blue (blue) was used to visualize the matrix of the biofilm in all images. (<b>A</b>) <i>S. sanguinis </i>WT expressing mTFP1 (green), (<b>B</b>) <i>S. sanguinis ∆har</i> expressing mTFP1 (green), and (<b>C</b>) <i>S. mutans</i> expressing mCherry (red).
DOI: 10.7910/dvn/o90uok
title: A89_3037.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/0ae8e58d-5b95-6775-7ea5-69ab208ee31a'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/0ae8e58d-5b95-6775-7ea5-69ab208ee31a
DOI: 10.7910/dvn/a4kzj0
title: A89_2087.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/66a92da3-c6e8-1409-fa1c-c21a22b31b8c'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/66a92da3-c6e8-1409-fa1c-c21a22b31b8c
DOI: 10.7910/dvn/9yxw9q
title: Supplementary data - Exploring hidden topics on hotel Facebook fan pages before and during the COVID-19 crisis

description: Research data used in the paper entitled "Exploring hidden topics on hotel Facebook fan pages before and during the COVID-19 crisis" published in Revista Brasileira de Gestão de Negócios (RBGN) V25, n3 (2023) Acess: https://rbgn.fecap.br/RBGN
DOI: 10.7910/dvn/a8xv1o
title: A15_27413.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/cc98a9a8-b3b6-42e0-9b97-4c4e4ae0a679'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/cc98a9a8-b3b6-42e0-9b97-4c4e4ae0a679
DOI: 10.7910/dvn/nzbl1l
title: Replication Data for: Predictive Modelling of Future Tea Consumption: Analysing Consumer Behaviour with Combining the Machine Learning and Agent-Based Simulation Approaches

description: The data set was used for the CHAID decision tree algorithm in the study.
DOI: 10.7488/ds/7663
title: Trypanocide knowledge and practices in Uganda
title: Trypanocide resistance in Uganda

description: The dataset are quantitative observations from a survey conducted in Uganda among 557 dairy farmers in 8 districts of southwestern Uganda. The communities are characterized by a high antimicrobial consumption rate although quantitative evidence was lacking through a search of any available scholarly resources. Entries are on farm structure, livestock densities, and income earned from livestock sales and associated expenditures. We subsequently assess farmer knowledge, opinions and practices on trypanocide usage within the community and entries are recorded as categories. Columns describing scores were made on a scale of 1-5 with 1 being the lowest and 5 the highest. This was done with the goal of quantifying the severity of the previous response.
DOI: 10.7488/ds/7743
title: One Health and the COVID-19 pandemic: Lessons for the control of epidemics including Tryapanosomiasis
title: TrypCov
title: Covid-19 and NTDs

description: Background: The pandemic has created an opportunity to review the strengths and threats to the One Health (OH) approach which has widely been promoted in several African countries. In this survey, we assessed the relevance of OH with the objective of understanding the underlying drivers to its poor implementation during the pandemic period by using Uganda as a case study. Methods: This was a key informant interview (KII) survey conducted across multiple districts in Uganda. We held in-person, virtual and phone calls with study participants and data was analysed and presented using a SWOT framework. Results: The study involved 12 participants, the majority from the central region, males, and senior officers, from the health and veterinary industries. Almost everyone got OH right by theoretical definition, with disciplinary collaborations being more common than multi-interdisciplinary collaborations. Major threats to OH were associated with working in silos, and the lack of a National One Health Policy thus making it challenging to mobilize national funding and coordination of OH activities in the country. Conflicts due to corruption in administrative offices are major barriers to multidisciplinary collaboration. The pandemic has provided more avenues to foster multi-interdisciplinary collaborations, and opportunities to gain budgetary support from the Ugandan government for OH activities. Conclusion: A lack of data-sharing initiatives among the ministries and limited advocacy for OH activities in rural communities are challenges that need to be addressed in strengthening national systems for future epidemics.
description: During the COVID-19 pandemic, we observed a chronic failure of one-health (OH) principles being applied, not only in the United Kingdom, but also in most developing countries. Here, we set out to identify critical drivers for this observed behavior pattern at a time when OH activities could have been embraced. The study was conducted amongst 12/20 OH experts with a background in academia, the Ministry of Health, Ministry of Agriculture Animal Industry and Fisheries, Non-governmental organizations and Ministry of Water and Environment. This dataset doesn’t involve any individual from the Ministry of Tourism and Trade (where the Uganda Wildlife Authority belongs), demonstrating missed opportunities at a time when the region was wheeling from the pandemic. R script briefly describes the distribution of study participants and transcribed responses are developed using a SWOT analysis.
DOI: 10.7488/ds/7787
title: SUPERSEDED: Primary data for manuscript on a homologue of lymphostatin in Chlamydia pecorum

description: ## ## This item has been replaced by the one which can be found at https://hdl.handle.net/10283/9002 ## Pathogens frequently produce proteins to evade or inhibit host immune responses. One such protein is lymphostatin from attaching and effacing Escherichia coli (also known as lymphocyte inhibitory factor A; LifA), which influences intestinal colonization and inhibits mitogen- and antigen-activated proliferation of T lymphocytes and pro-inflammatory cytokine synthesis. Here, we report the cloning, purification and characterization of a LifA homologue from Chlamydia pecorum. The predicted 382 KDa protein (CPE2_0552) exhibited 36 % identity and 55 % similarity over 3171 amino acids to lymphostatin from enteropathogenic E. coli strain E2348/69. CPE2_0552 shares glycosyltransferase and cysteine protease motifs required for lymphostatin activity, including similarity in the tertiary structure of these domains predicted by AlphaFold 3. Purified CPE2_0552 exhibited a surface envelope similar to that of lymphostatin when analyzed by electron microscopy. CPE2_0552 inhibited concanavalin A-stimulated proliferation of bovine T cells in a concentration-dependent manner, with an inhibitory dose 50 (ID50) of 990 pg/mL. This was 70-fold higher than the ID50 of E. coli E2348/69 lymphostatin tested in parallel on T cells from the same donors (14 ± 4 pg/mL), but was similar to another LifA homologue from E. coli O157:H7 (ToxB). Moreover, CPE2_0552 inhibited the secretion of interferon gamma (IFN?), a key cytokine that influences the outcome of Chlamydia infections. At the concentrations at which CPE2_0552 inhibited T lymphocyte proliferation and IFN? secretion, negligible cytotoxicity was observed after 72 h of stimulation. Our study indicates that E. coli lymphostatin belongs to a wider family of lymphocyte-inhibitory molecules that exist in distantly related bacterial pathogens.
DOI: 10.7488/ds/7930
title: Kerogen-rich shales and coals: Key drivers of microbial life and carbon cycling in the deep biosphere
title: Kerogen-rich shales and coals: Key drivers of microbial life and carbon cycling in the deep biosphere

description: DNA sequence data of DNA from kerogens after microbial enrichment. These data are for sequences of bacteria inhabiting laboratory microcosms of kerogens inoculated with a lab culture. They are sequences associated with incoulation of four primary kerogen types.
description: DNA sequence FASTA files of microbial communities from the work: Kerogen-rich shales and coals: Key drivers of microbial life and carbon cycling in the deep biosphere
DOI: 10.7910/dvn/oad1uj
title: A92_4726.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/d985ec0b-19db-9d64-d802-837ebc3716e8'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/d985ec0b-19db-9d64-d802-837ebc3716e8
DOI: 10.7910/dvn/o9xuq3
title: Early Career Pubs Data

description: Early Career Publishing and Reviewing: Pitfalls and Perspectives
DOI: 10.7910/dvn/o0bahu
title: A11_19068.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/b0b019a3-5d39-4ebb-82b2-87f46e536c58'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/b0b019a3-5d39-4ebb-82b2-87f46e536c58
DOI: 10.7910/dvn/a0wqfr
title: A11_19860.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/4694b48d-aa7b-4a38-8ee1-7991fa5ecf0b'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/4694b48d-aa7b-4a38-8ee1-7991fa5ecf0b
DOI: 10.7910/dvn/nyvspl
title: A86_757.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/a827477a-a89f-b970-b8cd-ebcce123b61c'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/a827477a-a89f-b970-b8cd-ebcce123b61c
DOI: 10.7910/dvn/o5lsfr
title: A90_3557.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/be97a624-477b-fcfa-02df-e034474f50b0'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/be97a624-477b-fcfa-02df-e034474f50b0
DOI: 10.7910/dvn/ad8xjq
title: A Low Dose Cyproterone Acetate in Feminizing Hormone Treatment

description: Supplementary tables
DOI: 10.7910/dvn/o77qsx
title: A85_345.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/0a6bfbc5-dcde-6eab-79fe-434e790cba63'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/0a6bfbc5-dcde-6eab-79fe-434e790cba63
DOI: 10.7910/dvn/a0bwkh
title: Labcode 5B- HIV neutralization testing withTZMBL cells

description: This protocol, similarly to the protocol of Labcode 2, describes a pseudovirus assay that measures neutralization of HIV, SIV and SHIV as a function of reductions in Tat-regulated Luc reporter gene expression after a single round of infection in TZM-bl cells.
DOI: 10.7910/dvn/o5pzo3
title: A16_32022.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/f9e67d34-c124-466e-a9ce-1d3d6150c3e9'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/f9e67d34-c124-466e-a9ce-1d3d6150c3e9
DOI: 10.7910/dvn/acnhmp
title: DeepLabCut Networks for 2D Pose Estimation

description: &lt;p&gt;
 This folder contains trained DeepLabCut networks for 2D pose estimation from multiple viewpoints, as described in this work. 
 It includes three subfolders, each corresponding to a different network for performing 2D pose estimation on &lt;strong&gt;side&lt;/strong&gt; (cam1), &lt;strong&gt;side-front&lt;/strong&gt; (cam2), and &lt;strong&gt;front&lt;/strong&gt; (cam3) views. We used the same networks for mirror cameras (e.g., the right and left sides). 
&lt;/p&gt;
&lt;p&gt;
 For more details on how to use these networks for 2D pose estimation and how to triangulate them to obtain 3D pose estimation, please visit the &lt;a href="https://github.com/NeLy-EPFL/kinematics3d" target="_blank"&gt;NeLy-EPFL/kinematics3d GitHub repository&lt;/a&gt;.
&lt;/p&gt;
&lt;p&gt;
 The accompanying PDF (tracked_keypoints_setup.pdf) provides information about the locations of the tracked points.
&lt;/p&gt;
&lt;p&gt;
 To uncompress the file, run the following command in the terminal:
&lt;/p&gt;
&lt;pre&gt;
$ tar -xvf filename.tgz
&lt;/pre&gt;
DOI: 10.7910/dvn/a6dxt1
title: Replication Data for: Climate Injustice, Off the Books

description: Government agencies need greenhouse gas accounting—inventories that track emissions over time—to design and implement climate policies. While virtually every law and policy to reduce greenhouse gas emissions needs to account for those emissions in the first place, accounting itself has largely escaped public scrutiny, relegated to the margins while mitigation measures take center stage.

Policymakers and the public often mistakenly assume that greenhouse gas accounting is an inconsequential, passive bookkeeping activity. It is not: gaps in accounting adversely affect disadvantaged communities, primarily poor communities of color. Many governments systematically exclude certain greenhouse gas emissions from their inventories. These excluded sources emit co-pollutants that worsen air quality for nearby communities, exacerbating health burdens. At the same time, omissions also undercut efforts to slow climate change, disproportionately impacting those most vulnerable. This Article draws on original empirical analyses to demonstrate how these exclusions perpetuate environmental injustices. In particular, it highlights how maritime ports—whose emissions are often unaccounted for by governments—are overwhelmingly located near disadvantaged communities, compounding environmental and health harms. 

Greenhouse gas accounting is anything but neutral. It is a powerful instrument that can either exacerbate environmental disparities or drive meaningful change. Recognizing the equity implications of greenhouse gas accounting, as this Article argues, is a pivotal yet underutilized strategy for environmental justice. Until governments fully account for their emissions, climate policy will remain incomplete, and the burdens of environmental harms will continue to disproportionately fall on those least responsible and most vulnerable to their devastating impacts.
DOI: 10.7910/dvn/ad3wh7
title: A13_24857.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/685dcc79-af2b-4e25-b754-0d01b39f5de9'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/685dcc79-af2b-4e25-b754-0d01b39f5de9
DOI: 10.7910/dvn/o7zqho
title: Executive Agreements Database, Statement Regarding Memorandum of Understanding Between The Centers For Disease Control and Prevention of the Department Of Health and Human Services of the United States of America and The Ministry Of Health of the Republic Of Rwanda For Cooperation In Preventing and Controlling HIV/AIDS and Other Infectious Diseases Signed At Kigali October 3, 2002

description: KAV 6091

First signed 10/03/2002
Last signed 10/03/2002
Entry into force (supplemented by last signed) 10/03/2002

stamped 02-105

C06542415

cover memo
DOI: 10.7910/dvn/addmbm
title: A10_18459.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/4f541912-b05c-4868-a9bd-8698f985a034'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/4f541912-b05c-4868-a9bd-8698f985a034