cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25573/serc.12252005.v1
title: Dataset: Carbon data for intertidal soils and sediments, Skeena River estuary, British Columbia

description: Tidal marsh soils were sampled at low tide along 12 transects along the Skeena River estuary south of Port Edward, British Columbia, in 2014 and 2017. Eight of the transects were on the northeast side of the channel; four were on the southwest side. Sampling locations were stratified according to vegetation type. Usually three pits were excavated to 1 m depth on each transect, with one pit in each of the distinct vegetation zones. Bulk samples were collected from each distinct soil horizon, or where horizons were not clearly differentiated, at 25 cm depth intervals. Core samples of fixed volume were also collected from the same excavations for bulk density determination. Chemical analyses consisted of total C concentration (equivalent to organic C for these non-calcareous materials), total N, pH, and electrical conductivity (a measure of salinity).
DOI: 10.5281/zenodo.3894902
title: Datasets used in the Lab Validation of the RADON Verification Tool

description: This repository contains the datasets that have been used to perform the lab validation of the RADON verification tool. In order to replicate the experiments, please unzip the file "validation-datasets.zip" and run the following command: <pre><code class="language-bash">./run_all.rb {path_to_VT} list.json</code></pre>
DOI: 10.18119/n90w3w
title: IMEx/IntAct Coronavirus Dataset, binding regions details
DOI: 10.18119/n9w590
title: IMEx/IntAct Coronavirus Dataset, mutations details
DOI: 10.18119/n9rc8f
title: IMEx/IntAct Coronavirus Dataset, full detail
DOI: 10.18119/n9mp4s
title: IMEx / IntAct Coronavirus Dataset, collapsed edges
DOI: 10.18434/m32168
title: Atmospheric Lifetimes of Halogenated Hydrocarbons: Improved Estimations from an Analysis of Modeling Results.

description: Partial lifetimes of chemical compounds in the atmosphere calculated by GSFC2D model (years).
DOI: 10.18112/openneuro.ds002894.v1.0.0
title: simpcomp
DOI: 10.5281/zenodo.3894967
title: 40 natural catchments across the US

description: A dataset of 40 natural catchments across the US with different sizes.
DOI: 10.5281/zenodo.3894966
title: 40 natural catchments across the US

description: A dataset of 40 natural catchments across the US with different sizes.
DOI: 10.5281/zenodo.3884266
title: MMS SITL Ground Loop: Data for the GLS-MP Magnetopause Model

description: Data required to run the mp-dl-unh model used for magnetopause classification by NASA's Magnetospheric Multiscale (MMS) mission. Included are the model weights, the scikit-learn scaling parameters, and the training and validation dataset used when creating the model. The model itself is available through GitHub and best run on Google Colabs. <strong>Releases associated with the data:</strong> GLS-MP: Notebooks that used the data in this deposit to train, validate, and run the unh-mp-dl model mp-dl-unh: Software used to run the model at the MMS SDC MMS SITL Ground Loop: Notebooks used to create tables and figures in the published paper PyMMS: Softwares used to download MMS data and burst selections
DOI: 10.5281/zenodo.3884265
title: MMS SITL Ground Loop: Data for the GLS-MP Magnetopause Model

description: Data required to run the mp-dl-unh model used for magnetopause classification by NASA's Magnetospheric Multiscale (MMS) mission. Included are the model weights, the scikit-learn scaling parameters, and the training and validation dataset used when creating the model. The model itself is available through GitHub and best run on Google Colabs. <strong>Releases associated with the data:</strong> GLS-MP: Notebooks that used the data in this deposit to train, validate, and run the unh-mp-dl model mp-dl-unh: Software used to run the model at the MMS SDC MMS SITL Ground Loop: Notebooks used to create tables and figures in the published paper PyMMS: Softwares used to download MMS data and burst selections
DOI: 10.5281/zenodo.3895073
title: Mathematical approach to the validation of surface texture filtration software

description: <pre>A novel method for the validation of surface texture filtration software is introduced. Mathematically traceable reference pairs for linear Gaussian filtration are developed, utilising Fourier series surface definitions in conjunction with the frequency dependent transmission characteristic of the linear Gaussian filter. The novel method is demonstrated using a library of reference pairs to validate the performance of five surface texture analysis software packages. Investigations into the effects of different surface properties are made in relation to the deviation of the software-obtained results from the traceable reference values. Analysis of variance tests are used to verify the statistical significance of the results.</pre>
DOI: 10.5281/zenodo.3895072
title: Mathematical approach to the validation of surface texture filtration software

description: <pre>A novel method for the validation of surface texture filtration software is introduced. Mathematically traceable reference pairs for linear Gaussian filtration are developed, utilising Fourier series surface definitions in conjunction with the frequency dependent transmission characteristic of the linear Gaussian filter. The novel method is demonstrated using a library of reference pairs to validate the performance of five surface texture analysis software packages. Investigations into the effects of different surface properties are made in relation to the deviation of the software-obtained results from the traceable reference values. Analysis of variance tests are used to verify the statistical significance of the results.</pre>
DOI: 10.23729/0fec1760-d320-44f3-baae-608aee509dc5
title: Mechanobiological model for simulation of injured cartilage degradation via pro-inflammatory cytokines and mechanical stimulus: experimental data, computational model results, and files to generate the models

description: Post-traumatic osteoarthritis is a musculoskeletal disorder where inflammatory processes and abnormal joint loading predispose articular cartilage to degradation after a mechanical injury. Since inflamed and injured cartilage cannot be reversed back to healthy state, prevention of osteoarthritis progression is advisable, a prestigious goal where computational models could serve as tools. The current literature is short of computational models combining both biochemical and biomechanical aspects of osteoarthritis. Thus, here we implemented inflammation of living cartilage tissue followed by biochemical perturbations of tissue homeostasis and shear strain-induced biomechanical degradation in novel cell-to-tissue-level finite element models. The models presented in this paper and enriched by our experimental findings/previous literature provide profound new mechanobiological insights and predictions about cartilage degradation in injured and inflamed tissue under physiologically relevant mechanical loading. We suggest that mechanobiological computational models could be applied as in silico analysis tools that provide clinicians information of the personalized progression of post-traumatic osteoarthritis and decision-making guidance for treatment of the disease. This dataset includes experimental data on cartilage degeneration obtained with digital densitometry (optical density near and away from chondral lesions), results from finite element models (loss of fixed charge density due to inflammation and biomechanical degradation), and the files needed to run the computational models.
DOI: 10.5281/zenodo.3894713
title: Cinque Terre Flooding - 25 Oct 2011 - Meso-NH Ensemble Reforecasts

description: Ensemble-based reforecasts using the Meso-NH model Variable: Total precipitation [kg/m^2] Starting dates: 2011/10/23 00 UTC, 2011/10/23 12 UTC, 2011/10/24 00 UTC, 2011/10/24 12 UTC Ending date: 2011/10/26 00 UTC
DOI: 10.5281/zenodo.3894712
title: Cinque Terre Flooding - 25 Oct 2011 - Meso-NH Ensemble Reforecasts

description: Ensemble-based reforecasts using the Meso-NH model Variable: Total precipitation [kg/m^2] Starting dates: 2011/10/23 00 UTC, 2011/10/23 12 UTC, 2011/10/24 00 UTC, 2011/10/24 12 UTC Ending date: 2011/10/26 00 UTC
DOI: 10.5281/zenodo.3894631
title: First Analysis of Earth's Stratospheric Gamma-Ray Emission in Geographical Coordinates with Fermi LAT (v1)

description: Data (in plain-text tabular format) for reproducing all plots in the manuscript.
DOI: 10.5281/zenodo.3895005
title: Petermann Fjord Sediment Core Computed Tomography (CT) Scans (Cruise OD1507)

description: Computed tomography (CT) scans of sediment cores collected from Petermann Fjord during the PETERMANN15 expedition of the Swedish Icebreaker Oden, OD1507. Included cores, 03TC, 03PC, 04GC, 06PC, 08GC, 10PC, 10TC, 40PC, 40TC, and 41GC. Data include 2 mm thick coronal slices in DICOM format and SedCT products, including images and CT numbers.
description: {"references": ["Reilly, B. T., Stoner, J. S., Mix, A. C., Walczak, M. H., Jennings, A., Jakobsson, M., et al. (2019). Holocene break-up and reestablishment of the Petermann Ice Tongue, Northwest Greenland. Quaternary Science Reviews, 218, 322\u2013342. https://doi.org/10.1016/j.quascirev.2019.06.023"]}
DOI: 10.5281/zenodo.3895004
title: Petermann Fjord Sediment Core Computed Tomography (CT) Scans (Cruise OD1507)

description: Computed tomography (CT) scans of sediment cores collected from Petermann Fjord during the PETERMANN15 expedition of the Swedish Icebreaker Oden, OD1507. Included cores, 03TC, 03PC, 04GC, 06PC, 08GC, 10PC, 10TC, 40PC, 40TC, and 41GC. Data include 2 mm thick coronal slices in DICOM format and SedCT products, including images and CT numbers.
description: {"references": ["Reilly, B. T., Stoner, J. S., Mix, A. C., Walczak, M. H., Jennings, A., Jakobsson, M., et al. (2019). Holocene break-up and reestablishment of the Petermann Ice Tongue, Northwest Greenland. Quaternary Science Reviews, 218, 322\u2013342. https://doi.org/10.1016/j.quascirev.2019.06.023"]}
DOI: 10.5284/1079008
title: Foxlow Farm, Harpur Hill, Buxton, Derbyshire: Strip, map and record investigation (OASIS ID: preconst1-347928)

description: Strip, map and record on an area where a Roman road was postulated. Previous evaluation found no conclusive evidence for a road though ditches and a linear gravel spread considered to be post-medieval were revealed. The present investigation examined the remains and obtained OSL dates that indicated the earliest ditch was 11th-12th century, while other ditches and the gravel spread were 15th-16th century.
DOI: 10.5284/1079009
title: Foxlow Farm, Harpur Hill, Derbyshire: Archaeological evaluation (OASIS ID: preconst1-303023)

description: The evaluation confirmed the geophysical anomalies to be associated with the underlying limestone geology of the site and no archaeological remains were identified in these areas. Examination of the putative line of the Roman road uncovered ditches, a probable limestone wall footing and a gravel surface. The ditches and wall footing were in proximity to each other and appear to be a sequence of field boundaries which, although undated, are perhaps of the period of post-medieval enclosure. The gravel surface was immediately below the extant drystone field boundary wall and the topsoil and would appear to be relatively recent. However, no dating evidence was recovered.
DOI: 10.5284/1079010
title: Lumford Mill, Bakewell Business Park, Derbyshire. Building recording (OASIS ID: archaeol5-311171)

description: Archaeological Research Services Ltd was commissioned in 2018 by Litton Properties Ltd to undertake a Level 2/ 3 historic building recording in order to discharge conditions of the planning permissions for a demolition of former mill buildings, associated structures and other buildings for the hotel development, improvements to existing site access, parking, landscaping and other associated works at Riverside Business Park, Bakewell Derbyshire: NGR SK 21236905. The cartographic records show that the site was originally occupied by one of Arkwright's water powered mills from 1777. However, the mill suffered a devastating fire in 1868 which gutted the interior and caused extensive damage. Later in the 19th century a new cotton mill was constructed on a smaller scale than the previous building but within part of the footprint of the 18th century structure and incorporating some of the stone work from the earlier mill. The site was expanded to the south in 1881 but by 1896 the production of cotton here was proving unsuccessful resulting in operations ceasing. In 1898 the site was bought by DP Battery Company and alterations were made to the building and new structures were erected mainly to the west of the mill.
DOI: 10.5281/zenodo.3895079
title: Cinque Terre Flooding - 25 Oct 2011 - MOLOCH Ensemble Reforecasts

description: Ensemble-based reforecasts using the MOLOCH model Variable: Total precipitation [kg/m^2] Starting dates: 2011/10/23 00 UTC, 2011/10/23 12 UTC, 2011/10/24 00 UTC, 2011/10/24 12 UTC Ending date: 2011/10/26 00 UTC
DOI: 10.5281/zenodo.3895078
title: Cinque Terre Flooding - 25 Oct 2011 - MOLOCH Ensemble Reforecasts

description: Ensemble-based reforecasts using the MOLOCH model Variable: Total precipitation [kg/m^2] Starting dates: 2011/10/23 00 UTC, 2011/10/23 12 UTC, 2011/10/24 00 UTC, 2011/10/24 12 UTC Ending date: 2011/10/26 00 UTC
DOI: 10.5281/zenodo.3895125
title: bimmer results for 405 phenotypes from the UKBB

description: Full data analysis results corresponding to the manuscript "Phenome-scale causal network discovery with bidirectional mediated Mendelian randomization"
DOI: 10.25919/5ee7c34f7c315
title: Parkes observations for project PX600 semester 2020APRS_08

description: The Galactic Center (GC) is a key target for the radio component of Breakthrough Listen (BL) program. Offering the largest amount of stars in any given direction in the sky, the GC is widely cited as a location believed to harbour advanced civilizations, and it is also the most energetic region in the Milky Way. We aim to conduct BL-GC Survey with Parkes radio telescope for around 350 hours. We will cover the frequency range from 700 MHz to 4 GHz, utilizing the newly installed ultra-wideband receiver. Our team has already leveraged both standard and bespoke tools to construct a flexible software stack to search data for signals of interest. We will look for signals from extraterrestrial intelligence (ETI) by searching for both simple narrow-band signals and complex modulated signals. Along with that, as an ancillary science, we will also search for accelerated pulsars — likely orbiting a supermassive black hole at the centre of the Milky Way Galaxy. Data products produced during this program will also be publically available to engage larger pulsar community
DOI: 10.5281/zenodo.3895138
title: CT, XRF, MSCL data and reconstructions in support of Reilly et al., (2019) Holocene break-up and reestablishment of the Petermann Ice Tongue, Northwest Greenland

description: Data sets include X-Ray Fluorescence (XRF), Computed Tomography (CT), and Multi-Sensor Core Logger (MSCL) data for cores collected from Petermann Fjord during the PETERMANN15 expedition of the Swedish Icebreaker Oden. Also, included are Fjord Ice-Rafted Debris (IRD) stacks and reconstructed Petermann Ice Tongue extents. XRF data includes data for OD1507 cores, 02UW, 03UW, 03PC, 03TC, 04GC, 06PC, 10PC, 40TC, 40PC. CT number data and CT derived IRD counts includes data for OD1507 cores, 02UW, 03UW, 03PC, 03TC, 04GC, 06PC, 08GC, 10PC, 40TC, 40PC. MSCL data includes data for OD1507 cores, 01UW, 02UW, 03UW, 01GC, 03PC, 03TC, 04GC, 06PC, 06TC, 08GC, 10PC, 10TC, 11GC, 12GC, 14GC, 37PC, 37TC, 40PC, 40TC, 41GC
description: {"references": ["Reilly, B. T., Stoner, J. S., Mix, A. C., Walczak, M. H., Jennings, A., Jakobsson, M., et al. (2019). Holocene break-up and reestablishment of the Petermann Ice Tongue, Northwest Greenland. Quaternary Science Reviews, 218, 322\u2013342. https://doi.org/10.1016/j.quascirev.2019.06.023"]}
DOI: 10.5281/zenodo.3895137
title: CT, XRF, MSCL data and reconstructions in support of Reilly et al., (2019) Holocene break-up and reestablishment of the Petermann Ice Tongue, Northwest Greenland

description: Data sets include X-Ray Fluorescence (XRF), Computed Tomography (CT), and Multi-Sensor Core Logger (MSCL) data for cores collected from Petermann Fjord during the PETERMANN15 expedition of the Swedish Icebreaker Oden. Also, included are Fjord Ice-Rafted Debris (IRD) stacks and reconstructed Petermann Ice Tongue extents. XRF data includes data for OD1507 cores, 02UW, 03UW, 03PC, 03TC, 04GC, 06PC, 10PC, 40TC, 40PC. CT number data and CT derived IRD counts includes data for OD1507 cores, 02UW, 03UW, 03PC, 03TC, 04GC, 06PC, 08GC, 10PC, 40TC, 40PC. MSCL data includes data for OD1507 cores, 01UW, 02UW, 03UW, 01GC, 03PC, 03TC, 04GC, 06PC, 06TC, 08GC, 10PC, 10TC, 11GC, 12GC, 14GC, 37PC, 37TC, 40PC, 40TC, 41GC
description: {"references": ["Reilly, B. T., Stoner, J. S., Mix, A. C., Walczak, M. H., Jennings, A., Jakobsson, M., et al. (2019). Holocene break-up and reestablishment of the Petermann Ice Tongue, Northwest Greenland. Quaternary Science Reviews, 218, 322\u2013342. https://doi.org/10.1016/j.quascirev.2019.06.023"]}
DOI: 10.5281/zenodo.3895160
title: Genoa Flooding - 4 November 2011 - MOLOCH Ensemble Reforecasts

description: Ensemble-based reforecasts using the MOLOCH model Variable: Total precipitation [kg/m^2] Starting dates: 2011/11/02 00 UTC, 2011/11/02 12 UTC, 2011/11/03 00 UTC, 2011/11/03 12 UTC Ending date: 2011/11/05 00 UTC
DOI: 10.5281/zenodo.3895159
title: Genoa Flooding - 4 November 2011 - MOLOCH Ensemble Reforecasts

description: Ensemble-based reforecasts using the MOLOCH model Variable: Total precipitation [kg/m^2] Starting dates: 2011/11/02 00 UTC, 2011/11/02 12 UTC, 2011/11/03 00 UTC, 2011/11/03 12 UTC Ending date: 2011/11/05 00 UTC
DOI: 10.5281/zenodo.3895212
title: Geostatistical Analysis of SARS-CoV-2 in the United States

description: Geostatistics analyzes and predicts the values associated with spatial or spatio-temporal phenomena. It incorporates the spatial (and in some cases temporal) coordinates of the data within the analyses. It is a practical means of describing spatial patterns and interpolating values for locations where samples were not taken (and measures the uncertainty of those values, which is critical to informed decision making). This Zenodo archive consists of two archives consisting of geostatistical analyses of SARS-CoV-2 testing data: 1. "Louisiana-SARS-CoV-2-Geostatistical-Analysis.zip": Geostatistical analysis of SARS-CoV-2 cases across Louisiana in March and early April 2020. 2. "Entire-US-SARS-CoV-2-Geostatistical-Analysis.zip": Geostatistical analysis of SARS-CoV-2 cases across the entire U.S. during the month of May 2020, with additional analyses covering SARS-CoV-2 cases from March 24th to June 10th 2020. These archives consist of map files (as both static images and as animations) and data files (including text files which contain the underlying data of said map files [where applicable]) which were generated when performing the following Geostatistical analyses: Hot Spot analysis (Getis-Ord Gi*), Cluster and Outlier analysis (Anselin Local Moran's I), Kriging and Densification analysis (Louisiana only), and Spatial Autocorrelation (Global Moran's I; United States only). The Word document ("Description-of-Archive.Geostatistical-Analysis-of-SARS-CoV-2.docx") describes in detail the contents of each file and folder within these two archives.
DOI: 10.5281/zenodo.3895217
title: Data and code to perform the"Target deformation" workflow in R: virtual reconstruction of the Equus stenonis holotype skulll

description: Data and code to perform the"Target deformation" workflow in R: virtual reconstruction of the Equus stenonis holotype skulll. TargetDeformation.R: R code with for the Target Deformation procedure.<br> IGF560.ply: 3D mesh of the holotype IGF560 in ply extension.<br> IGF560_set.txt: landmark set of the holotype IGF560.<br> Dm. 5/154.3/4.A4.5.ply: 3D mesh of Dm 5/154.3/4.A4.5 in .ply extension.<br> Dm_set.txt: landmark set of the Dm 5/154.3/4.A4.5 sample.<br> IGF11023: 3D mesh of IGF11023 in.ply extension.<br> IGF11023_set.txt: landmark set on the IGF11023 sample.<br> IGF560R: 3D mesh of IGF560R in.ply extension.<br> IGF560W: 3D mesh of IGF560W in.ply extension.<br> IGF560R-s: 3D mesh of IGF560R-s in.ply extension.<br> IGF560W-s: 3D mesh of IGF560W-s in.ply extension.<br> IGF560_IGF560R_IGF560W.html: file that contain WebGL code to reproduce the 3D meshes of IGF560, IGF560R and IGF560W in a browser.<br> IGF560Rs_IGF560Ws.html: file that contain WebGL code to reproduce the 3D meshes of IGF560R-S and IGF560W-S in a browser.<br> IGF560W Mesh area variation.html: file that contain WebGL code to reproduce two 3d meshes of IGF560W using localmeshDist() and meshdist() in a browser.<br>
DOI: 10.5281/zenodo.3819867
title: Data and code to perform the"Target deformation" workflow in R: virtual reconstruction of the Equus stenonis holotype skulll

description: Data and code to perform the"Target deformation" workflow in R: virtual reconstruction of the Equus stenonis holotype skulll. TargetDeformation.R: R code with for the Target Deformation procedure.<br> IGF560.ply: 3D mesh of the holotype IGF560 in ply extension.<br> IGF560_set.txt: landmark set of the holotype IGF560.<br> Dm. 5/154.3/4.A4.5.ply: 3D mesh of Dm 5/154.3/4.A4.5 in .ply extension.<br> Dm_set.txt: landmark set of the Dm 5/154.3/4.A4.5 sample.<br> IGF11023: 3D mesh of IGF11023 in.ply extension.<br> IGF11023_set.txt: landmark set on the IGF11023 sample.<br> IGF560R: 3D mesh of IGF560R in.ply extension.<br> IGF560W: 3D mesh of IGF560W in.ply extension.<br> IGF560R-s: 3D mesh of IGF560R-s in.ply extension.<br> IGF560W-s: 3D mesh of IGF560W-s in.ply extension.<br> IGF560_IGF560R_IGF560W.html: file that contain WebGL code to reproduce the 3D meshes of IGF560, IGF560R and IGF560W in a browser.<br> IGF560Rs_IGF560Ws.html: file that contain WebGL code to reproduce the 3D meshes of IGF560R-S and IGF560W-S in a browser.<br> IGF560W Mesh area variation.html: file that contain WebGL code to reproduce two 3d meshes of IGF560W using localmeshDist() and meshdist() in a browser.<br>
DOI: 10.21227/jkd6-yf64
title: GeoCoV19: A Dataset of Hundreds of Millions of Multilingual COVID-19 Tweets with Location Information

description: Abstract:The past several years have witnessed a huge surge in the use of social media platforms during mass convergence events such as health emergencies, natural or human-induced disasters. These non-traditional data sources are becoming vital for disease forecasts and surveillance when preparing for epidemic and pandemic outbreaks. We present GeoCoV19, a large-scale Twitter dataset containing more than 524 million multilingual tweets posted over a period of 90 days since February 1, 2020. Moreover, we employ a gazetteer-based approach to infer the geolocation of tweets. We postulate that this large-scale, multilingual, geolocated social media data can empower the research communities to evaluate how societies are collectively coping with this unprecedented global crisis as well as to develop computational methods to address challenges such as identifying fake news, understanding communities' knowledge gaps, building disease forecast and surveillance models, among others. Full paper: https://arxiv.org/abs/2005.11177