cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/e174221
title: Likert

description: This data set has 407 responses of researchers from India
DOI: 10.3886/e174221v1
title: Likert

description: This data set has 407 responses of researchers from India
DOI: 10.34808/0w29-q110
title: Abnormal cytological findings - Female, 44 - Cell image [7020730007134241]

description: This is the histopathological image of CERVIX UTERI cell sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 44Clinical description: Prophylaxis. IUD.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XVIII - Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classifiedDiagnosis: Abnormal cytological findingsResult of the histopathological examination: NILM (Negative for Intraepithelial Lesion or Malignancy). Bacterial vaginosis. Papsmear contains multiple superficial epithelial cells, including multiple clue cells, glandular cervical cells (single or in groups) and cells from the transformation zone. Among them multiple granulocytes.Sample:Material: SurePathCollecting method: Exfoliative cytologyTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: ExocervixType of staining: positive/HCStaining: PapanicolaouAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/bdzb-7w36
title: CERVIX UTERI, Exocervix - Female, 48 - Cell image [7020730007132651]

description: This is the histopathological image of CERVIX UTERI cell sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 48Clinical description: Prophylaxis. Firts symptoms of hypoestrogenism.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: NILM (Negative for Intraepithelial Lesion or Malignancy). Papsmear contains multiple superficial and intermediate epithelial cells,  numerous  glandular and metaplastic cells. Among them, quite numerous granulocytes can be seen.Sample:Material: SurePathCollecting method: Exfoliative cytologyTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: ExocervixType of staining: positive/HCStaining: PapanicolaouAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/j837-pp16
title: CERVIX UTERI, Exocervix - Female, 42 - Cell image [7020730007139141]

description: This is the histopathological image of CERVIX UTERI cell sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 42Clinical description: Prophylaxis.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: NILM (Negative for Intraepithelial Lesion or Malignancy). Papsmear contains multiple superficial epithelial cells,  no glandular cervical cells. The Papsmear taen superficially from the exocervix only.Sample:Material: SurePathCollecting method: Exfoliative cytologyTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: ExocervixType of staining: positive/HCStaining: PapanicolaouAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/92k9-ad43
title: Abnormal cytological findings - Female, 38 - Cell image [7020730007134891]

description: This is the histopathological image of CERVIX UTERI cell sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 38Clinical description: Prophylaxis.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XVIII - Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classifiedDiagnosis: Abnormal cytological findingsResult of the histopathological examination: NILM (Negative for Intraepithelial Lesion or Malignancy). Bacterial vaginosis. Papsmear contains multiple superficial epithelial cells, including multiple clue cells, glandular cervical cells (single or in groups) and single cells from the transformation zone. Among them granulocytes partly adhering to the epithelial cells.Sample:Material: SurePathCollecting method: Exfoliative cytologyTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: ExocervixType of staining: positive/HCStaining: PapanicolaouAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/vtcv-qk09
title: CERVIX UTERI, Exocervix - Female, 38 - Cell image [7020730007135911]

description: This is the histopathological image of CERVIX UTERI cell sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 38Clinical description: Prophylaxis.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: NILM (Negative for Intraepithelial Lesion or Malignancy). Papsmear contains multiple superficial epithelial cells (partly overlapping), multiple groups of glandular cervical cells, sparse granulocytes.Sample:Material: SurePathCollecting method: Exfoliative cytologyTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: ExocervixType of staining: positive/HCStaining: PapanicolaouAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.6084/m9.figshare.20205617
title: Longitudinal clinical simulation cohorts

description: <strong>Rotroff Lab</strong> <strong>2022-07-01</strong> This repository contains simulated datasets related to <code>Identification of Robust Deep Neural Network Models of Longitudinal Clinical Measurements</code> article published in <em>npj Digital Medicine</em> (2022). These datasets were simulated by manipulating shapes and magnitudes of clinical longitudinal measurements of random blood glucose tests, systolic blood pressure and BMI. Per clinical measurement type, 3168 datasets were generated. In half of these datasets, classes were defined by differences in shape (50%, N=1584) and in the other half, classes were defined by differences in magnitudes (50%, N=1584). The complete list of parameters manipulated is as follows: Effect Size: 0.25-2.75 Dispersion: 0.25-2.00 Noise: 0%, 10%, 25%, 50% Irregularity: Moderate (0-3 missing measurements) or High (2-5 missing measurements) For more information on the simulations, please refer to the Methods section of the paper. Please note that with the inclusion of class imbalance, the total number of cohorts increased to 12,672 in the paper. <strong>Parameter annotations</strong> The parameters are annotated in the file names as follows: _Simulated_Cohort_EffectSize_Dispersion_Noise_Irregularity_OverlapBetweenClasses.csv When <code>IrrNMP</code> is used for Irregularity, no irregularity is applied. <code>OverlapBetweenClasses</code> specifies the overlap between the two classes. <strong>Directory Structure</strong> The directory structure for each clinical measurement type is as follows: bmi_simulation (N=1056)mag_cohorts shape_cohorts <code>Simulation_Cohort_IDRandomNumber</code>: Random trajectory base 4 irregularity_cohorts other_cohorts <code>Simulation_Cohort_ID_RandomNumber</code>: Random trajectory base 5 irregularity_cohorts other_cohorts <code>Simulation_Cohort_ID_RandomNumber</code>: Random trajectory base 6 irregularity_cohorts other_cohorts glucose_simulation (1056)mag_cohorts shape_cohorts sbp_simulation (N=1056)mag_cohorts shape_cohorts <strong>Note:</strong> <code>irregularity_cohorts</code>: Effect sizes, dispersions and irregularity were manipulated in these files. <code>other_cohorts</code>: Effect sizes, dispersions and noise were manipulated in these files. <br> <br> Please cite the following paper and this dataset in your work: <br> H. Javidi, et al., Identification of Robust Deep Neural Network Models of Longitudinal Clinical Measurements, Nature Digital Medicine, 2022.
DOI: 10.6084/m9.figshare.20205617.v4
title: Longitudinal clinical simulation cohorts

description: <strong>Rotroff Lab</strong> <strong>2022-07-01</strong> This repository contains simulated datasets related to <code>Identification of Robust Deep Neural Network Models of Longitudinal Clinical Measurements</code> article published in <em>npj Digital Medicine</em> (2022). These datasets were simulated by manipulating shapes and magnitudes of clinical longitudinal measurements of random blood glucose tests, systolic blood pressure and BMI. Per clinical measurement type, 3168 datasets were generated. In half of these datasets, classes were defined by differences in shape (50%, N=1584) and in the other half, classes were defined by differences in magnitudes (50%, N=1584). The complete list of parameters manipulated is as follows: Effect Size: 0.25-2.75 Dispersion: 0.25-2.00 Noise: 0%, 10%, 25%, 50% Irregularity: Moderate (0-3 missing measurements) or High (2-5 missing measurements) For more information on the simulations, please refer to the Methods section of the paper. Please note that with the inclusion of class imbalance, the total number of cohorts increased to 12,672 in the paper. <strong>Parameter annotations</strong> The parameters are annotated in the file names as follows: _Simulated_Cohort_EffectSize_Dispersion_Noise_Irregularity_OverlapBetweenClasses.csv When <code>IrrNMP</code> is used for Irregularity, no irregularity is applied. <code>OverlapBetweenClasses</code> specifies the overlap between the two classes. <strong>Directory Structure</strong> The directory structure for each clinical measurement type is as follows: bmi_simulation (N=1056)mag_cohorts shape_cohorts <code>Simulation_Cohort_IDRandomNumber</code>: Random trajectory base 4 irregularity_cohorts other_cohorts <code>Simulation_Cohort_ID_RandomNumber</code>: Random trajectory base 5 irregularity_cohorts other_cohorts <code>Simulation_Cohort_ID_RandomNumber</code>: Random trajectory base 6 irregularity_cohorts other_cohorts glucose_simulation (1056)mag_cohorts shape_cohorts sbp_simulation (N=1056)mag_cohorts shape_cohorts <strong>Note:</strong> <code>irregularity_cohorts</code>: Effect sizes, dispersions and irregularity were manipulated in these files. <code>other_cohorts</code>: Effect sizes, dispersions and noise were manipulated in these files. <br> <br> Please cite the following paper and this dataset in your work: <br> H. Javidi, et al., Identification of Robust Deep Neural Network Models of Longitudinal Clinical Measurements, Nature Digital Medicine, 2022.
DOI: 10.34808/2p15-t051
title: CERVIX UTERI, Exocervix - Female, 51 - Cell image [7020730007139761]

description: This is the histopathological image of CERVIX UTERI cell sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 51Clinical description: Prophylaxis. Early atrophy.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: NILM (Negative for Intraepithelial Lesion or Malignancy). Papsmear contains multiple superficial epithelial cells, also from the basal and intermediate layers (atrophic changes), numerous glandular and metaplastic cells. Among them, quite numerous granulocytes can be seen.Sample:Material: SurePathCollecting method: Exfoliative cytologyTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: ExocervixType of staining: positive/HCStaining: PapanicolaouAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34740/kaggle/dsv/3891250
title: Russian Invasion of Ukraine
DOI: 10.34808/gpp0-rv56
title: CERVIX UTERI, Exocervix - Female, 25 - Cell image [7020730007139011]

description: This is the histopathological image of CERVIX UTERI cell sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 25Clinical description: Prophylaxis. OC.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: NILM (Negative for Intraepithelial Lesion or Malignancy). Papsmear contains multiple superficial epithelial cells (partly overlapping), scattered  glandular cervical cells, sparse granulocytes.Sample:Material: SurePathCollecting method: Exfoliative cytologyTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: ExocervixType of staining: positive/HCStaining: PapanicolaouAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/cp5m-7b76
title: CERVIX UTERI, Exocervix - Female, 56 - Cell image [7020730007134461]

description: This is the histopathological image of CERVIX UTERI cell sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 56Clinical description: Prophylaxis. Hormone releasing IUDGender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: NILM (Negative for Intraepithelial Lesion or Malignancy). Papsmear contains multiple superficial epithelial cells, also from the basal and intermediate layers (atrophic changes), numerous clusters of glandular and metaplastic cells. Among them scattered  granulocytes can be seen.Sample:Material: SurePathCollecting method: Exfoliative cytologyTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: ExocervixType of staining: positive/HCStaining: PapanicolaouAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/wweg-t183
title: CERVIX UTERI, Exocervix - Female, 42 - Cell image [7020730007133161]

description: This is the histopathological image of CERVIX UTERI cell sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 42Clinical description: Prophylaxis.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: NILM (Negative for Intraepithelial Lesion or Malignancy). Papsmear contains multiple superficial epithelial cells (partly overlapping), multiple groups of glandular cervical cells, scattered granulocytes.Sample:Material: SurePathCollecting method: Exfoliative cytologyTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: ExocervixType of staining: positive/HCStaining: PapanicolaouAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/p8yk-8285
title: CERVIX UTERI, Exocervix - Female, 41 - Cell image [7020730007139101]

description: This is the histopathological image of CERVIX UTERI cell sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 41Clinical description: Prophylaxis.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: NILM (Negative for Intraepithelial Lesion or Malignancy). Papsmear contains multiple superficial epithelial cells (partly overlapping), sparse  glandular cervical cells, single scattered granulocytes.Sample:Material: SurePathCollecting method: Exfoliative cytologyTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: ExocervixType of staining: positive/HCStaining: PapanicolaouAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/rrd2-ny22
title: CERVIX UTERI, Exocervix - Female, 40 - Cell image [7020730007126981]

description: This is the histopathological image of CERVIX UTERI cell sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 40Clinical description: Prophylaxis.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: NILM (Negative for Intraepithelial Lesion or Malignancy). Papsmear contains multiple superficial epithelial cells, scattered groups of glandular cervical cells and single cells from the transformation zone. Among them single  granulocytes can be spotted.Sample:Material: SurePathCollecting method: Exfoliative cytologyTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: ExocervixType of staining: positive/HCStaining: PapanicolaouAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/a5q8-yb11
title: CERVIX UTERI, Exocervix - Female, 43 - Cell image [7020730007134771]

description: This is the histopathological image of CERVIX UTERI cell sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 43Clinical description: Prophylaxis. OC.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: NILM (Negative for Intraepithelial Lesion or Malignancy). Papsmear contains multiple superficial epithelial cells (partly overlapping), glandular cervical cells and  sparse granulocytes.Sample:Material: SurePathCollecting method: Exfoliative cytologyTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: ExocervixType of staining: positive/HCStaining: PapanicolaouAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/t9c9-pg32
title: CERVIX UTERI, Exocervix - Female, 55 - Cell image [7020730007138421]

description: This is the histopathological image of CERVIX UTERI cell sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 55Clinical description: Prophylaxis. Atrophy.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: NILM (Negative for Intraepithelial Lesion or Malignancy). Papsmear contains multiple superficial epithelial cells, also from the basal and intermediate layers (atrophic changes), clusters of glandular and metaplastic cells. Among them, quite numerous scattered  granulocytes can be seen.Sample:Material: SurePathCollecting method: Exfoliative cytologyTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: ExocervixType of staining: positive/HCStaining: PapanicolaouAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/9srw-5056
title: CERVIX UTERI, Exocervix - Female, 28 - Cell image [7020730007138541]

description: This is the histopathological image of CERVIX UTERI cell sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 28Clinical description: Prophylaxis. 16 weeks after delivery.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: NILM (Negative for Intraepithelial Lesion or Malignancy). Papsmear contains multiple superficial epithelial cells, also from the basal and intermediate layers, clusters of glandular and metaplastic cells. Among them, quite numerous granulocytes can be seen.Sample:Material: SurePathCollecting method: Exfoliative cytologyTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: ExocervixType of staining: positive/HCStaining: PapanicolaouAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/tfde-nn25
title: Abnormal cytological findings - Female, 37 - Cell image [702073000713991]

description: This is the histopathological image of CERVIX UTERI cell sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 37Clinical description: Prophylaxis.  Recurring infections.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XVIII - Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classifiedDiagnosis: Abnormal cytological findingsResult of the histopathological examination: NILM (Negative for Intraepithelial Lesion or Malignancy). Bacterial vaginosis. Papsmear contains multiple superficial epithelial cells, clue cells, groups of glandular cervical cells and from the transformation zone. Among them multiple granulocytes partly adhering to the epithelial cells.Sample:Material: SurePathCollecting method: Exfoliative cytologyTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: ExocervixType of staining: positive/HCStaining: PapanicolaouAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk