cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21922089.v1
title: Supplementary Material for: Role of the prognostic nutritional index in predicting survival in advanced hepatocellular carcinoma treated with atezolizumab plus bevacizumab

description: Introduction: The prognostic nutritional index (PNI) is a multiparametric score introduced by Onodera based on the blood levels of lymphocytes and albumin in patients with gastrointestinal neoplasms. Regarding hepatocellular carcinoma (HCC), its prognostic role has been demonstrated in patients treated with sorafenib and lenvatinib. The aim of this real-world study is to investigate the association between clinical outcomes and PNI in patients being treated with atezolizumab plus bevacizumab. Methods: The overall cohort of this multicentric study included 871 consecutive HCC patients from 4 countries treated with atezolizumab plus bevacizumab in first-line therapy. The PNI was calculated as follows: 10 × serum albumin concentration (g/dL) + 0.005 × peripheral lymphocyte count (number/mm3). Results: For only 773 patients, data regarding lymphocyte counts and albumin levels were available, so only these patients were included in the final analysis. The cut-off point of the PNI was determined to be 41 by receiver operating characteristic (ROC) analysis. 268 patients (34.7%) were categorized as the PNI-low group, while the remaining 505 (65.3%) patients as the PNI-high group. At the univariate analysis, high PNI was associated with longer overall survival (OS) (22.5 vs. 10.1 months, HR 0.34, p &lt; 0.01) and progression-free survival (PFS) (8.7 vs. 5.8 months, HR 0.63, p &lt; 0.01) compared to patients with low PNI. At the multivariate analysis, high versus low PNI resulted as an independent prognostic factor for OS (HR 0.49 , p &lt; 0.01) and PFS (HR 0.82, p = 0.01). There was no difference in objective response rate (ORR) between the two groups (high 26.1% vs. low 19.8%, p = 0.09), while disease control rate (DCR) was significantly higher in the PNI-high group (76.8% vs. 66.4%, p = 0.01). Conclusion: PNI is an independent prognostic factor for OS and PFS in HCC patients on first-line treatment with atezolizumab plus bevacizumab.
DOI: 10.6084/m9.figshare.28080248.v1
title: <b>Evaluating the impact of gridded population datasets variability on flood exposure estimates across South Asia</b>

description: The zip archive contains all the data and codes used to enable the manuscript ‘<b>Evaluating the impact of gridded population datasets variability on flood exposure estimates across South Asia</b>’ analysis, including hazard, population grids, exposure, vectors boundaries and analysis data.
DOI: 10.6084/m9.figshare.12315629.v1
title: Multimodal dataset of 37 Kyokushin karate athletes.

description: Multimodal dataset of 37 Kyokushin karate athletes. <strong>Notice 02/03/2023</strong> Please note that 3 files are named incorrectly, see below for the correct file names: 1) File 2017-03-03-B0388-S05-E01-T02.c3d - correct file name 2017-03-03-B0388-S05-E02-T01.c3d 2) File 2017-03-03-B0388-S05-E02-T01.c3d - correct file name 2017-03-03-B0388-S05-E01-T02.c3d 3) File 2017-03-07-B0396-S03-E02-T01.c3d - correct file name 2017-03-07-B0396-S03-E01-T03.c3d
DOI: 10.17632/cz7frtx4np
title: Molecular mechanism for Tn7-like transposon recruitment by a type I-B CRISPR effector

description: This Mendeley Dataset includes uncropped gels, Excel datasets for graphs, and raw mass spectrometry data for the following paper. 
Wang, S., Gabel, C., Siddique, R., Klose, T., and Chang, L. (2023). Molecular mechanism for Tn7-like transposon recruitment by a type I-B CRISPR effector. Cell. 10.1016/j.cell.2023.07.010.
DOI: 10.17632/pnv35ynsjs
title: Excel-файл с результатами контент-анализа отчетов компаний, использованных в магистерской диссертации Оствальд А.В.

description: Excel-файл с результатами контент-анализа отчетов компаний, использованных в магистерской диссертации Оствальд А.В.
DOI: 10.6084/m9.figshare.25711189.v1
title: Additional file 1 of Unveiling the ventral morphology of a rare early Cambrian great appendage arthropod from the Chengjiang biota of China

description: Additional file 1: Fig. S1. Drishti renderings of the two Tanglangia longicaudata holotype parts. A Hz-f-7-228, part. B Hz-f-7-229, counterpart. Fig. S2. Drishti renderings of the “outer”, dorsal side of three Tanglangia longicaudata specimens. A YKLP 17219. B YKLP 17217. C YKLP 17218. Fig. S3. Drishti renderings of Tanglangia longicaudata specimen YKLP 17217 in ventro-laterally compressed orientation showing details of the triangular shaped, backward folded tergopleural spines (taphonomically biased). A, C, E Drishti rendering with activated shadow renderer. B, D, F Drishti rendering without activated shadow renderer. A, B anterior oblique view. C, D anterior oblique view, specimen inclined. E, F posterior oblique view. Not to scale.
DOI: 10.6084/m9.figshare.7101458.v1
title: Implantable collamer lens and femtosecond laser for myopia: comparison using an adaptive optics visual simulator

description: Purpose: To compare optical and visual quality of implantable collamer lens (ICL) implantation and femtosecond laser in situ keratomileusis (F-LASIK) for myopia. Methods: The CRX1 adaptive optics visual simulator (Imagine Eyes, Orsay, France) was used to simulate the wavefront aberration pattern after the two surgical procedures for -3-diopter (D) and -6-D myopia. Visual acuity at different contrasts and contrast sensitivities at 10, 20, and 25 cycles/degree (cpd) were measured for 3-mm and 5-mm pupils. The modulation transfer function (MTF) and point spread function (PSF) were calculated for 5-mm pupils. Results: F-LASIK MTF was worse than ICL MTF, which was close to diffraction-limited MTF. ICL cases showed less spread out of PSF than F-LASIK cases. ICL cases showed better visual acuity values than F-LASIK cases for all pupils, contrasts, and myopic treatments (p&lt;0.05). No statistically significant differences were found in contrast sensitivities between ICL and F-LASIK cases with -3-D myopia for both pupils for all evaluated spatial frequencies (p&gt;0.05). For -6-D myopia, however, statistically significant differences in contrast sensitivities were found for both pupils for all evaluated spatial frequencies (p&lt;0.05). Contrast sensitivities were better after ICL implantation than after F-LASIK. Conclusions: ICL implantation and F-LASIK provide good optical and visual quality, although the former provides better outcomes of MTF, PSF, visual acuity, and contrast sensitivity, especially for cases with large refractive errors and pupil sizes. These outcomes are related to the F-LASIK producing larger high-order aberrations.
DOI: 10.6084/m9.figshare.10024739.v1
title: In-tube condensation data of R404A, R448A, and R452A in a horizontal 4.7 mm ID tube

description: The attached data was collected at Oregon State University in the Thermal Energy Systems and Transport (TEST) Laboratory during flow condensation experiments for refrigerants R404, R448A and R452A. The experiments were conducted in a horizontal circular copper tube of 4.7mm internal diameter. Water, flowing in the annulus, was used as the coolant. The local condensation heat transfer coefficients and the associated qualities for each refrigerant are reported at varying mass fluxes (100 to 800 kg m^(-2) s^(-1)) and saturation temperatures of 40, 50 and 60 degrees Celsius. <br>The test section was divided into 7 segments. Exact length of each section is recorded below and attached figure shows visual representation of a segment. Water inlet and outlet temperature and the copper tube surface temperature are measured in each segment. The surface temperatures were measured at the center of each section using self-adhesive surface thermocouples. Using these measurements, local heat transfer coefficients and thermodynamic qualities were evaluated for each segment. This was accomplished by performing energy balances on the coolant side to determine the heat duties transferred in each section. <br>Summaries of the average measured values and the calculated variables are presented in the remaining sheets of this document. For more details regarding the experiments, results, and conclusions, please see cited references.
DOI: 10.17632/8gxd548ksh
title: Data for: Coal Spontaneous Combustion: Examples of the Self-heating Incubation Process

description: Coal quality data and self-heating test results
DOI: 10.6084/m9.figshare.22360735.v1
title: Prediction of Postoperative Reintervention Risk for Uterine Fibroids using Clinical-Imaging Features and T2WI Radiomics before High-Intensity Focused Ultrasound Ablation

description: These data were used to support the results of this study. If you need more information, please get in touch with the corresponding author. Corresponding Author: Xiao-hua Huang Department of Radiology, Affiliated Hospital of North Sichuan Medical College, No.63 Wenhua Road, Shunqing District, Nanchong 637000, China E-mail: 15082797553@163.com
DOI: 10.6084/m9.figshare.9810212.v3
title: GC bias metrics for the congruently/non-congruently classified samples between array/WGS and original coverage and downsampled WGS-derived data

description: This file contain GC bias metrics for all the samples (n = 67). The data was derived using the CollectGcBiasMetrics tool from Picard tools (https://broadinstitute.github.io/picard/). The GC bias metrics include AT_DROPOUT, representing how undercovered regions with GC content less than 50% are compared to the mean coverage; GC_DROPOUT, representing how undercovered regions with GC content greater than 50% are compared to the mean coverage; GC_NC_0_19, representing normalized coverage over quintile of GC content ranging from 0%–19%; GC_NC_20_39, representing normalized coverage over quintile of GC content ranging from 20%–39%; GC_NC_40_59, representing normalized coverage over quintile of GC content ranging from 40%–59%; GC_NC_60_79, representing normalized coverage over quintile of GC content ranging from 60%–79% and GC_NC_80_100, representing normalized coverage over quintile of GC content ranging from 80%–100. The Type column indicates whether the sample relates to the tumour or normal tissue of a given donor. The Congruency column indicates whether a given sample was congruently (con) v/s non-congruently classified (ncon) classified between original and downsampled WGS data. The Metric column indicates the GC bias metric of interest. The value column provides the numerical value of the GC bias metric of interest for the tumour or normal sample of a particular donor.<br>
DOI: 10.17632/3nyr5x2nz5
title: Study on the correlation of prevalence of ocular disease to different demographic variables, medical history and concomitant diseases.

description: Random blood sugar, cholesterol, and triglycerides were analyzed by taking the blood sample from each patient. The average of the parameters was recorded, and the standard deviation (SD) was calculated. The parameters have been presented in the study as mean± SD. Blood sample analysis revealed that the average random blood glucose level (mg/dl) was 113.3±26.9 (Mean ±SD). The average cholesterol level was 189.35± 49.7 mg/dl, and the average triglycerides level was 124.25±50.0 mg/dl. Average systolic and diastolic blood pressure was found to be 126.0 ± 15.5 mmHg and 81.43 ± 8.0 mmHg, respectively. The patients were examined by the dermatologist. The dermatologists observed the signs, and the patients were asked about the presence of the symptoms to evaluate the severity of psoriasis and psoriatic arthropathy. The patients were asked about the duration for which they had been suffering from psoriasis. On average, a patient was found to be suffering from psoriasis for 11.4 ±9.9 years (the duration ranged from a minimum of 1 year to a maximum of 45 years). The doctor screened the patients for the number of sites involved and evaluated the severity of psoriasis via psoriasis area and severity index (PASI) score. Average Psoriasis Area and Severity Index (PASI) for the patients, as recorded by the dermatologists, was found to be 5.94 ± 6.8. The patients who have psoriasis were found to be under different treatment modalities. Figure 1 shows that the most used treatment approach was Methotrexate (MTX) (31%) and Topical formulations (31%). T he next one is Humira prescribed to 16% of patients. Cyclosporine were found to be recommended to D ijobet, Netigasone, 8%, 6%, and 4% of patients, respectively. Each of Enbrel, cream, and ointment was prescribed for 2% of patients separately.
DOI: 10.6084/m9.figshare.19745629.v1
title: CDS.xlsx

description: CDS raw dataset
DOI: 10.6084/m9.figshare.22226902.v3
title: φC31 -Mediated Cassette Exchange in Sf9 Insect Cells for Stable Expression

description: The raw data for the artical &lt; φC31 -Mediated Cassette Exchange in Sf9 Insect Cells for Stable Expression&gt;
DOI: 10.6084/m9.figshare.27003856.v1
title: Supplementary Material for: Association of hypophosphatemia during continuous kidney replacement therapy and clinical outcomes: a systematic review and meta-analysis

description: Introduction: Hypophosphatemia is a common and potentially severe complication of continuous kidney replacement therapy (CKRT), but the evidence on the correlation between hypophosphatemia occurring during CKRT and clinical outcomes remains limited.
Methods: Electronic databases (PubMed, Embase, Web of Science, and the Cochrane database) were searched from inception to March 1, 2024. All possible studies that examined the following outcomes were included: all-cause mortality, mechanical ventilation, intensive care unit (ICU) stay, and CKRT duration.
Results: A total of 8,631 patients from eight cohort studies were included. There was no statistical association between hypophosphatemia during CKRT and all-cause mortality in critically ill patients (OR 0.82, 95% CI 0.57–1.18, P =0.28, I2 = 83%). However, hypophosphatemia was associated with longer duration of mechanical ventilation (WMD 80.30h, 95% CI 31.37–129.22, P =0.001, I2 = 60%). Furthermore, a longer length of ICU stay (WMD 2.76d, 95% CI 2.50–3.02, P &lt;0.00001, I2 = 36%) and CKRT duration (WMD 51.51h, 95% CI 2.69–100.34, P =0.04, I2 = 96%) were observed in patients with hypophosphatemia.
Conclusions: The association between hypophosphatemia and mortality in patients receiving CKRT was insufficient. However, hypophosphatemia during CKRT might be associated with adverse clinical outcomes for critically ill patients.
DOI: 10.17632/h5w9s36bf5
title: Data for: Mechanism of Solid-State Clumped Isotope Reordering in Carbonate Minerals from Aragonite Heating Experiments

description: This data file includes a summary of the bulk and clumped isotope data from the aragonite and calcite heating experiments in this study, along with initial processed data of standards and samples in different analytical sessions.
DOI: 10.17633/rd.brunel.7558679.v1
title: Supply Chain Logistics Problem Dataset

description: Dataset is divided into 7 tables, one table for all orders that needs to be assigned a route – <i>OrderList</i> table, and 6 additional files specifying the problem and restrictions. For instance, the <i>FreightRates</i> table describes all available couriers, the weight gaps for each individual lane and rates associated. The <i>PlantPorts</i> table describes the allowed links between the warehouses and shipping ports in real world. Furthermore, the <i>ProductsPerPlant</i> table lists all supported warehouse-product combinations. The V<i>miCustomers</i> lists all special cases, where warehouse is only allowed to support specific customer, while any other non-listed warehouse can supply any customer. Moreover, the <i>WhCapacities</i> lists warehouse capacities measured in number of orders per day and the <i>WhCosts</i> specifies the cost associated in storing the products in given warehouse measured in dollars per unit.
DOI: 10.6084/m9.figshare.12154662.v1
title: Safeguarding the genetic integrity of native pollinators requires stronger regulations on commercial lines

description: Input file (STR format) with 9,063 unlinked SNPs used for performing Bayesian clustering (Structure) and principal component (Adegenet) analyses for all studied populations of <i>Bombus terrestris</i>.
DOI: 10.17632/djvn2337s6
title: Raw fasta files used in Molecular evidence of Intermediate Disturbance Hypothesis across scales of biological organization

description: FASTA files containing fragments of the mitochondrial gene Cytochrome C Oxidase subunit I (COI) obtained with Sanger sequencing, for two sea urchin species, Arbacia lixula and Paracentrotus lividus. These samples were collected from individuals inhabiting along natural CO2 gradient in the Canary Islands, Spain.
DOI: 10.6084/m9.figshare.23545290.v1
title: Supplementary Material for: Discontinuation of Renin-Angiotensin System Inhibitors and Clinical Outcomes in Chronic Kidney Disease: A Systemic Review and Meta-Analysis

description: <b><i>Background:</i></b> Discontinuation of renin-angiotensin system (RAS) inhibitors is common in patients with chronic kidney disease (CKD), and the potential danger has been reported in several studies. However, a comprehensive analysis has not been conducted. <b><i>Objectives:</i></b> This study sought to evaluate the effects of discontinuation of RAS inhibitors in CKD. <b><i>Method:</i></b> Relevant studies up to November 30, 2022, were identified in the PubMed, Embase, Web of Science, and Cochrane Library databases. Efficacy outcomes included the composite of all-cause mortality, cardiovascular events, and end-stage kidney disease (ESKD). Results were combined using a random-effects or fixed-effects model, and sensitivity analysis used the leave-one-out method. <b><i>Results:</i></b> Six observational studies and one randomized clinical trial including 244,979 patients met the inclusion criteria. Pooled data demonstrated that discontinuation of RAS inhibitors was associated with an increased risk of all-cause mortality (HR 1.42, 95% CI 1.23–1.63), cardiovascular event risk (HR 1.25, 95% CI 1.17–1.22), and ESKD (HR 1.23, 95% CI 1.02–1.49). In sensitivity analyses, the risk for ESKD was reduced. Subgroup analysis showed that the risk of mortality was more pronounced in patients with eGFR above 30 mL/min/m<sup>2</sup> and in patients with hyperkalemia-related discontinuation. In contrast, patients with eGFR below 30 mL/min/m<sup>2</sup> were at great risk of cardiovascular events. <b><i>Conclusions:</i></b> The discontinuation of RAS inhibitors in patients with CKD was associated with a significantly increased risk of all-cause mortality and cardiovascular events. These data suggest that RAS inhibitors should be continued in CKD if the clinical situation allows.
DOI: 10.6084/m9.figshare.24975030.v1
title: Supplementary Material for: Consumption Pattern of Tea is associated with Serum Ferritin Levels of Women of Childbearing Age in Nandi County, Kenya: A Cross-sectional Study

description: Introduction: Tea consumption with meals affects iron absorption increasing the risk of iron deficiency. Our study investigated the association between tea consumption patterns and serum ferritin levels among women of childbearing age (WCA) in Nandi County, Kenya. 
Methods: We conducted a cross-sectional analytical study among 160 WCA selected using a systematic random sampling technique from Kapsabet Ward. Information on tea consumption practices was gathered using a researcher-administered questionnaire, and serum ferritin and C-reactive protein were measured. We assessed associations between tea consumption and iron status of respondents by multivariable regression analysis, adjusting for potential confounders, including parasitic infections and recent severe blood losses. 
Results: The prevalence of anaemia and iron deficiency among the study participants were 86.2% and 45%, respectively. Majority (90.6%) of the respondents consumed tea or coffee, with an infusion time of more than 5 minutes (60.0%) and a moderate tea strength (64.1%), within 1-hr before or after meals. Iron deficiency was associated the number of teacups consumed (adjusted odds ratio = 7.282, 95% CI = 3.580-14.812).
Conclusion: High tea consumption is positively associated with iron deficiency among WCA. Lower tea infusion strength, shorter tea infusion duration, and a lower number of teacups overall consumed, as well as consuming tea one hour before or after meals instead of with meals may be recommended for better outcomes in iron status among WCA.
DOI: 10.6084/m9.figshare.28444079.v4
title: Supplementary Data File 14. Figure source data

description: Source data for Figure 1-5 of the manuscript "Mitochondrial complex I deficiency occurs in skeletal muscle of a subgroup of individuals with Parkinson’s disease" by Kverneng et al.
DOI: 10.6084/m9.figshare.28448249.v1
title: Code for <b><i>Lower global food system emissions via integrating dietary transition and localized food supply</i></b>

description: Code for <b><i>Lower global food system emissions via integrating dietary transition and localized food supply</i></b>
DOI: 10.17632/7vfz8smbsx
title: Two Decades of Transformation: A Bibliometric Study on Dynamic Capabilities, Organizational Performance, and Sustainability

description: The data contains publications in the Scopus database related to the topic of Dynamic Capabilities, Organizational Performance, and Sustainability during the last two decades. The data is used in bibliometric analysis.
DOI: 10.6084/m9.figshare.21253269.v1
title: global_pandemic_sim

description: Modeling the global dynamics of emerging infectious diseases (EIDs) like COVID-19 can provide important guidance in the preparation and mitigation of pandemic threats. While age-structured transmission models are widely used to simulate the evolution of EIDs, most of these studies focus on the analysis of specific countries and fail to characterize the spatial spread of EIDs across geographic regions. Here, we developed a global pandemic simulator that integrates age-structured disease transmission models across 3,157 cities and explored its usage under several scenarios.
DOI: 10.17632/g4bdsvg8bm
title: Travel times of temporary seismic arrays and 3-D Vp and Vs models in the mid-to-south segment of the Red River fault, China

description: The waveforms used to pick the P and S-wave arrivals of one event, the travel times of the temporary seismic arrays manually picked by ourselves, and the obtained Vp, Vs and Vp/Vs models.
DOI: 10.6084/m9.figshare.12033501.v3
title: Data of PVL in Japan

description: Data of patients with PVL in Japan<br>
DOI: 10.6084/m9.figshare.13554707.v2
title: Infrastructure-scale sustainable energy planning in the cityscape: Transforming urban energy metabolism in East Asia

description: Datasets and Jupyter notebook corresponding to the paper "Infrastructure-scale sustainable energy planning in the cityscape: Transforming urban energy metabolism in East Asia" published in WIREs Energy and Environment. <br>See the Jupyter Notebook for additional explanations about the datasets.
DOI: 10.6084/m9.figshare.28030076.v2
title: Raw data for flood risk assessment of subway stations based on uncertainty analysis

description: Raw data for flood risk assessment of subway stations based on uncertainty analysis, including slope in Beijing DEM、 Station information, water system, flood risk map, fire station location, etc.
DOI: 10.6084/m9.figshare.3560001.v1
title: Appendix H. Supplementary information on testing competing configuration, local-scale composition, and landscape-scale composition hypotheses.

description: Supplementary information on testing competing configuration, local-scale composition, and landscape-scale composition hypotheses.