cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16787882
title: An Architectural Perspective on MLOps: Structures, Processes, Tools, and Stakeholders

description: An Architectural Perspective on MLOps: Structures, Processes, Tools, and Stakeholders

This repository contains all the data, scripts, and documents that can assist the readers in replicating our research. 

The study aims to synthesize a comprehensive architecture of state-of-the-art MLOps systems from a structural perspective (RQ1) and a process perspective (RQ2) as referred to in the manuscript of the study.

 

The following are included in this replication package:





The folder ‘data’ includes 3 spreadsheet files containing search and snowballing results (list of selected papers), data extraction, and data synthesis.







All the scripts that help the interested reader to automate parts of the research and synthesis process can be found in the ‘scripts’ folder.



 

To replicate the process, one may consult the methodology section in the manuscript.
DOI: 10.5281/zenodo.18287286
title: An Architectural Perspective on MLOps: Structures, Processes, Tools, and Stakeholders

description: An Architectural Perspective on MLOps: Structures, Processes, Tools, and Stakeholders

This repository contains all the data, scripts, and documents that can assist the readers in replicating our research. 

The study aims to synthesize a comprehensive architecture of state-of-the-art MLOps systems from a structural perspective (RQ1) and a process perspective (RQ2) as referred to in the manuscript of the study.

 

The following are included in this replication package:





The folder ‘data’ includes 3 spreadsheet files containing search and snowballing results (list of selected papers), data extraction, and data synthesis.







All the scripts that help the interested reader to automate parts of the research and synthesis process can be found in the ‘scripts’ folder.



 

To replicate the process, one may consult the methodology section in the manuscript.
DOI: 10.15468/azk3va
title: Mud shrimps of the genus Wolffogebia Sakai, 1982 (Decapoda: Gebiidea Upogebiidae) with the description of a new species from the C ần Gi ớ Mangrove Biosphere Reserve, South Vietnam

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kolevatov, Vasily, Marin, Ivan (2022): Mud shrimps of the genus Wolffogebia Sakai, 1982 (Decapoda: Gebiidea Upogebiidae) with the description of a new species from the C ần Gi ớ Mangrove Biosphere Reserve, South Vietnam. Zootaxa 5195 (1): 51-72, DOI: 10.11646/zootaxa.5195.1.3AbstractA new species of mud dwelling burrowing shrimp Wolffogebia cangioensis sp. nov. is described from the Soài R ạp River delta in the Cần Giớ Mangrove Biosphere Reserve, South Vietnam. The presence of Wolffogebia inermis Sakai, 1982 in the same area is also confirmed based on the freshly collected male specimen. Thorough morphological descriptions, genetic data (barcoding) and in situ ecological observations are presented for both species. A review of the previous records from Vietnam and Southeastern Asia as well as the taxonomic status of the genus Wolffogebia Sakai, 1982 within the family Upogebiidae are also discussed in the article. The key to all species of the genus is presented.
DOI: 10.15468/y9dxu5
title: Redescription of Moenkhausia melogramma (Characiformes: Characidae), a poorly known tetra from the western Amazon basin

description: This dataset contains the digitized treatments in Plazi based on the original journal article Soares, Isabel M., Ota, Rafaela P., Lima, Flávio C. T., Benine, Ricardo C. (2020): Redescription of Moenkhausia melogramma (Characiformes: Characidae), a poorly known tetra from the western Amazon basin. Neotropical Ichthyology 18 (3): 1-17, DOI: 10.1590/1982-0224-2020-0025, URL: http://dx.doi.org/10.1590/1982-0224-2020-0025Moenkhausia melogramma is herein redescribed, based on the examination of the holotype plus additional specimens from the western Amazon basin in Brazil, Colombia, Peru, and Ecuador. Moenkhausia melogramma shares with M. collettii, M. conspicua, M. copei, M. venerei, and M. flava a broad dark longitudinal stripe across the eye, and a well-defined dark stripe on the anal-fin base. It can be promptly distinguished from these species by having two humeral blotches. Additionally, we provide comments on the putative relationships of Moenkhausia melogramma with the aforementioned congeners and the Hemigrammus lunatus species-group.
DOI: 10.5281/zenodo.18287071
title: SuperDARN data in netCDF format (2000-Sep)

description: 2000-Sep SuperDARN radar data in netCDF format. These files were produced using version 3.0 of the public FitACF algorithm, using the AACGM v2 coordinate system. Cite this dataset if using our data in a publication.


The RST is available here: https://github.com/SuperDARN/rst



The research enabled by SuperDARN is due to the efforts of teams of scientists and engineers working in many countries to build and operate radars, process data and provide access, develop and improve data products, and assist users in interpretation.
Users of SuperDARN data and data products are asked to acknowledge this support in presentations and publications.
A brief statement on how to acknowledge use of SuperDARN data is provided below.




Users are also asked to consult with a SuperDARN PI prior to submission of work intended for publication.
A listing of radars and PIs with contact information can be found here:
(SuperDARN Radar Overview)



Recommended form of acknowledgement for the use of SuperDARN data:



'The authors acknowledge the use of SuperDARN data. SuperDARN is a collection of radars funded by national scientific funding agencies of Australia, Canada, China, France, Italy, Japan, Norway, South Africa, United Kingdom and the United States of America.'
DOI: 10.5281/zenodo.6802431
title: SuperDARN data in netCDF format (2000-Sep)

description: 2000-Sep SuperDARN radar data in netCDF format. These files were produced using version 3.0 of the public FitACF algorithm, using the AACGM v2 coordinate system. Cite this dataset if using our data in a publication.


The RST is available here: https://github.com/SuperDARN/rst



The research enabled by SuperDARN is due to the efforts of teams of scientists and engineers working in many countries to build and operate radars, process data and provide access, develop and improve data products, and assist users in interpretation.
Users of SuperDARN data and data products are asked to acknowledge this support in presentations and publications.
A brief statement on how to acknowledge use of SuperDARN data is provided below.




Users are also asked to consult with a SuperDARN PI prior to submission of work intended for publication.
A listing of radars and PIs with contact information can be found here:
(SuperDARN Radar Overview)



Recommended form of acknowledgement for the use of SuperDARN data:



'The authors acknowledge the use of SuperDARN data. SuperDARN is a collection of radars funded by national scientific funding agencies of Australia, Canada, China, France, Italy, Japan, Norway, South Africa, United Kingdom and the United States of America.'
DOI: 10.15468/dl.a24shy
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Echinocystis lobata",
 "Country is Serbia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 35 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017528-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ftmhy
title: Occurrence Download

description: A dataset containing 1619 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Echinocystis lobata",
 "Country is Poland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1619 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017527-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.heqe5w
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Echinocystis lobata",
 "Country is Slovenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 117 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017529-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18287295
title: Miconia australis (Cham.) R.Goldenb. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:49
DOI: 10.5281/zenodo.18287296
title: Miconia australis (Cham.) R.Goldenb. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:49
DOI: 10.15468/rdzbt6
title: Nightmare on Dendropanax Street: What is Dendropanax arboreus (Araliaceae)?

description: This dataset contains the digitized treatments in Plazi based on the original journal article Morales, J. Francisco, Idárraga-Piedrahita, Alvaro (2022): Nightmare on Dendropanax Street: What is Dendropanax arboreus (Araliaceae)? Phytotaxa 536 (2): 154-164, DOI: 10.11646/phytotaxa.536.2.4AbstractDendropanax arboreus have been considered a high phenotypic variable species and the name applied to many different entities from Mexico and the West Indies to Brazil and Bolivia, from sea level up to 3200 m. A circumscription of D. arboreus based on the West Indies populations is proposed. This is the first step in order to delucidate how many taxa have been lumped into the synonymy of that species in the Neotropic. Lectotypes are designated for the names Gilibertia brachypoda and Sciodaphyllum samydifolium.
DOI: 10.5281/zenodo.18287299
title: Miconia hyemalis A.St.-Hil. & Naudin ex Naudin. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:49
DOI: 10.5281/zenodo.18287298
title: Miconia hyemalis A.St.-Hil. & Naudin ex Naudin. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:49
DOI: 10.5281/zenodo.15280775
title: The Asymmetron lucayanum Genome Project

description: This data repository contains supplementary data files for the Asymmetron lucayanum genome project. 

First of all, the gene annotation files that we generated for five cephalochordate species:



Alu: Asymmetron lucayanum

Bbe: Branchiostoma belcheri 

Bfl: Branchiostoma floridae

Bja: Branchiostoma japonicum

Bla: Branchiostoma lanceolatum


The Alu genome was sequenced by our team (www.evomicslab.org) with collaboration with Dr. Jr-Kai Yu, Dr. Sung-Jin Cho, and Dr. Linda Holland. Two haplotype-decoupled assemblies were produced corresponding to the reference (filename: Asymmetron_lucayanum.ref.*) and alternative (filename: Asymmetron_lucayanum.alt.*). The assembly file of these two genome assemblies have been deposited in Genome Warehouse of National Genomics Data Center (https://ngdc.cncb.ac.cn/gwh) under the accession numbers of GWHFWAS00000000.1 and GWHFWAV00000000.1 respectively.

The Bbe, Bfl, Bja, and Bla genome assemblies were generated by previous studies:




Species
NCBI Genbank accession number
Reference


Bbe
GCA_019207075.1
Huang et al. (2023) Three amphioxus reference genomes reveal gene and chromosome evolution of chordates. PNAS, 120 (10), e2201504120


Bfl
GCA_019207045.1
Huang et al. (2023) Three amphioxus reference genomes reveal gene and chromosome evolution of chordates. PNAS, 120 (10), e2201504120


Bja
GCA_013266295.2
Huang et al. (2023) Three amphioxus reference genomes reveal gene and chromosome evolution of chordates. PNAS, 120 (10), e2201504120


Bla
GCA_927797965.1
Brasó-Vives et al. (2022) Parallel evolution of amphioxus and vertebrate small-scale gene duplications. Genome Biology, 23 (1), 243




 

All 6 genome assemblies were annotated with the same annotation pipeline in our study: RepeatMasker (v4.1.1) and EDTA (v2.0.1) for  repeats/TE annotation, FunAnnotate (v1.8.15) for protein coding gene and tRNA gene annotation, RNAmmer (v1.2) for rRNA gene annotation. 

Explanation for each files:

Species_name.gff3.gz  # protein-coding gene and tRNA gene annotation in GFF3 format (compressed by gzip)

Species_name.cds-transcripts.fa.gz  # CDS/transcript sequences of annotated protein-coding genes in FASTA format (compressed by gzip)

Species_name.proteins.fa.gz  # protein sequences of annotated protein-coding genes in FASTA format (compressed by gzip)

Species_name.rRNA.gff2.gz # rRNA gene annotation in GFF2 format (compressed by gzip)

Species_name.TEanno.gff3.gz # TE annotation in GFF3 format (compressed by gzip)

Also, we curated the multi-stage bulk RNA-seq datasets (both from this study and published studies) of five cephalochordate species and mapped them to the corresponding annotated genomes described above. The gene expression profile was summarized by TPM and provided with the following file:cephalochordate_TPM.xlsx
DOI: 10.5281/zenodo.18287300
title: Micranthemum Michx. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:49
DOI: 10.5281/zenodo.18287301
title: Micranthemum Michx. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:49
DOI: 10.15468/dl.zjnjhw
title: Occurrence Download

description: A dataset containing 317 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heracleum sosnowskyi",
 "Country is Poland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 317 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017530-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/takbcr
title: Notes on the bryophytes of Madagascar 5: new records from old collections

description: This dataset contains the digitized treatments in Plazi based on the original journal article Brinda, John C., He, Si, Atwood, John J., Magill, Robert E., Reeb, Catherine (2021): Notes on the bryophytes of Madagascar 5: new records from old collections. Cryptogamie, Bryologie 20 (15): 205-211, DOI: 10.5252/cryptogamie-bryologie2021v42a15, URL: http://dx.doi.org/10.5252/cryptogamie-bryologie2021v42a15ABSTRACTInvestigations into the bryophyte flora of Madagascar as part of the MadBryo project, show that five moss genera (Actinodontium Schwägr., Aulacopilum Wilson, Forsstroemia Lindb., Haplohymenium Dozy & Molk., and Herzogiella Broth.) are new for the island. For three additional taxa we clarify the correct name to use for Malagasy specimens. Ectropothecium perrieri Thér. is placed in synonymy with Herzogiella cylindricarpa (Cardot) Z.Iwats. and Lepidopilum diversifolium Renauld & Cardot is reduced to a synonym of Thamniopsis utacamundiana (Mont.) W.R.Buck. These particular cases highlight the hidden diversity lurking within underutilized natural history collections. They should also serve as a reminder that older collections need to be critically reexamined as our taxonomic concepts evolve.
DOI: 10.15468/83v35c
title: A new species of Culumana DeLong & Freytag (Hemiptera: Cicadellidae: Gyponini) from Peru, with two new combinations

description: This dataset contains the digitized treatments in Plazi based on the original journal article Domahovski, Alexandre Cruz (2024): A new species of Culumana DeLong & Freytag (Hemiptera: Cicadellidae: Gyponini) from Peru, with two new combinations. Zootaxa 5523 (5): 593-600, DOI: 10.11646/zootaxa.5523.5.9, URL: http://dx.doi.org/10.11646/zootaxa.5523.5.9AbstractCulumana currently comprises fourteen species of which thirteen occur in South America, mainly in Peru and Bolivia, and one on Central America. Culumana maculosa sp. nov. is described from Peru and Curtara picchua DeLong, 1979 is transferred to Culumana. A revised diagnosis of the genus Culumana is provided. In addition, Gypona bipartita Linnavuori & DeLong, 1977 is transferred to Chilenana DeLong & Freytag, 1977.
DOI: 10.15468/nyvu33
title: Lectotypification of Indopiptadenia oudhensis (Leguminosae: Mimosoideae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Tiwari, Arjun Prasad (2017): Lectotypification of Indopiptadenia oudhensis (Leguminosae: Mimosoideae). Phytotaxa 297 (3): 282-284, DOI: 10.11646/phytotaxa.297.3.7, URL: http://dx.doi.org/10.11646/phytotaxa.297.3.7
DOI: 10.15468/fmzwxg
title: On the symphytognathoid spider genus Mysmenopsis Simon, 1898 (Araneae: Mysmenidae) from the Brazilian Amazonian region: description of five new species and new records

description: This dataset contains the digitized treatments in Plazi based on the original journal article Pantoja, Paulo, Bonaldo, Alexandre Bragio, Xavier, Cláudia (2023): On the symphytognathoid spider genus Mysmenopsis Simon, 1898 (Araneae: Mysmenidae) from the Brazilian Amazonian region: description of five new species and new records. Zootaxa 5319 (1): 57-75, DOI: 10.11646/zootaxa.5319.1.4, URL: http://dx.doi.org/10.11646/zootaxa.5319.1.4AbstractFive new species of Mysmenopsis from the Brazilian Amazonian region are described: M. rodriguesae n. sp. and M. nadineae n. sp. known by males and females, M snethlageae n. sp., M. lopardoae n. sp. and M. regiae n. sp. known only by males. Three species, M. cienaga Müller, 1987 (previously known from Peru and Colombia), M. penai Platnick & Shadab, 1978 (Ecuador and Colombia), and M. shushufindi Dupérré & Tapia, 2020 (Ecuador) are recorded for the first time in Brazilian Amazonian region. An additional record of M. penai from northeastern Brazil is included.
DOI: 10.15468/35ps6u
title: Neotype designation of the Short-tailed Albatross Phoebastria albatrus (Pallas 1769) (Aves: Procellariiformes: Diomedeidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Yamasaki, Takeshi, Eda, Masaki, Schodde, Richard, Loskot, Vladimir (2022): Neotype designation of the Short-tailed Albatross Phoebastria albatrus (Pallas 1769) (Aves: Procellariiformes: Diomedeidae). Zootaxa 5124 (1): 81-87, DOI: 10.11646/zootaxa.5124.1.6AbstractThe Short-tailed Albatross Phoebastria albatrus (Pallas, 1769) is a threatened seabird widely distributed in the northern Pacific Ocean with its largest breeding sites on the Senkaku Islands and Torishima Island, Japan, which are separated by over 1700 km. A recent taxonomic revision based on morphological, behavioral, and DNA sequence evidence has revealed that this species consists of two cryptic species: a smaller species which breeds mainly in the Senkaku Islands, and a larger species which breeds mainly on Torishima Island. However, it has remained unclear to which of these species the scientific name Phoebastria albatrus applies, because the type specimens are lost. Here a neotype is designated to resolve this taxonomic issue. From now on, the scientific name Phoebastria albatrus should be applied only to the smaller species breeding on the Senkaku Islands. The name of the larger species is more problematic, as the types of each synonym of P. albatrus must be traced, found, and examined.
DOI: 10.15468/dsgx9u
title: Seven new species of the Neotropical electric fish Gymnotus (Teleostei, Gymnotiformes) with a redescription of G. carapo (Linnaeus).

description: This dataset contains the digitized treatments in Plazi based on the original journal article James S. Albert, William G. R. Crampton (2003): Seven new species of the Neotropical electric fish Gymnotus (Teleostei, Gymnotiformes) with a redescription of G. carapo (Linnaeus). Zootaxa 287: 1-54, URL: http://www.zoobank.org/urn:lsid:zoobank.org:pub:19CA5B52-4CA5-45CC-A4C7-B234596A8470
DOI: 10.15468/gudd77
title: Taxonomy of Mexican and Central American Members of Solanum Series Conicibaccata (sect. Petota)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Spooner, David M., Van Den Berg, Ronald G., Peña, Antonio Rivera-, Velguth, Peter, Rio, Alfonso Del, López, Alberto Salas- (2001): Taxonomy of Mexican and Central American Members of Solanum Series Conicibaccata (sect. Petota). Systematic Botany 26 (4): 743-756, DOI: 10.1043/0363-6445-26.4.743ABSTRACT. Members of Solanum series Conicibaccata in Mexico and Central America are very similar. All are tetraploids (2 n = 4 x = 48). Recent authors have recognized three or four species: S. agrimonifolium, S. woodsonii, S. longiconicum (sometimes included in the next), and S. oxycarpum. We had difficulty distinguishing these species in the herbarium, and needed to resolve species boundaries for ongoing floristic studies. We studied this group in the field throughout Mexico, Guatemala, Costa Rica, and Panama, grew collections in the greenhouse, studied herbarium specimens, determined ploidy levels through flow cytometry, and generated molecular data using Random Amplified Polymorphic DNA. Molecular data distinguish S. agrimonifolium, S. longiconicum, and S. oxycarpum. Solanum woodsonii was not available for molecular analysis. All four species can be distinguished morphologically, but only by leaf character states that overlap in range, by pubescence differences that are best observed in living specimens, and by a seed spot character that is only evident on living or recently gathered specimens.
DOI: 10.15468/dl.9c4pfh
title: Occurrence Download

description: A dataset containing 1212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Juglans regia",
 "Country is Poland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1212 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017531-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/w838b2
title: Nomenclature and typifications in Celmisia (Asteraceae: Astereae): The New Zealand endemic subgenera Caespitosae, Glandulosae, and Lignosae

description: This dataset contains the digitized treatments in Plazi based on the original journal article Saldivia, Patricio (2023): Nomenclature and typifications in Celmisia (Asteraceae: Astereae): The New Zealand endemic subgenera Caespitosae, Glandulosae, and Lignosae. Phytotaxa 591 (1): 31-45, DOI: 10.11646/phytotaxa.591.1.3, URL: http://dx.doi.org/10.1094/PDIS-04-22-0755-PDNAbstractAs part of ongoing taxonomic studies on the subtribe Celmisiinae, a nomenclatural analysis of names validly published in Celmisia subgenera Caespitosae, Glandulosae and Lignosae is presented, including 10 new lectotypifications.