cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25494/p6f010
title: SCR_Aerial_AnacapaIsland_1999_2012_KelpPersistence

description: These raster and vector datasets were developed for the Sea Grant South Coast MPA Baseline Program as part of the project “Nearshore Substrate Mapping and Change Analysis using Historical and Concurrent Multispectral Imagery” (#R/MPA 30 10-049). The study region is the South Coast Region (SCR). Kelp thematic maps from 1999-2012 were used for this product. Ocean Imaging acquired the imagery and classification data used for this analysis from its own Digital Multispectral Camera (DMSC), the Microsoft UltraCam-X aerial camera system and from kelp habitat classifications archived by the California Department of Fish and Wildlife (CDFW). Details on this systems and the data processing are below in the Lineage section of this document. The persistence analyses show the persistence of kelp beds in the SCR and MPAs as a percentage of the number of years analyzed. The coverage area is from Conception, CA south to Imperial Beach, CA. The GIS analysis product files are deliverd are in GeoTIFF (.tif) and ESRI Shapefile formats as well as Adobe Acrobat PDF files.This raster dataset contains a persistence analysis of giant kelp beds along the California South Coast Region (SCR) from from Point Conception, CA down to Imperial beach, CA. This specific raster classification includes the Anacapa Island SMCA and Anacapa Island SMR.This dataset was originally uploaded to Oceanspaces (http://oceanspaces.org/) and the Knowledge Network for Biocomplexity (KNB, https://knb.ecoinformatics.org/data) in 2013 as part of the South Coast baseline monitoring program. In 2022 this dataset was moved to the California Ocean Protection Council Data Repository (https://opc.dataone.org/) by Mike Esgro (Michael.Esgro@resources.ca.gov) and Rani Gaddam (gaddam@ucsc.edu). At that time the GIS analysis products were added to the dataset.The long-term California MPA boundary and project info tables can be found as a separate dataset here: https://opc.dataone.org/view/doi:10.25494/P64S3W.
DOI: 10.18739/a2pz51n4s
title: Physical and chemical parameters in the water column of Lake 578, southern Greenland 2016-2019

description: This dataset includes physical and chemical parameters in the water column of Lake 578 (61.08° North, 45.61° West), southern Greenland. In order to validate the application of a relatively new paleothermometer (branched glycerol dialkyl glycerol tetraether) in the Arctic, Lake 578 was selected as a suitable location, because human activity in the lake catchment today is minimal, and vegetation in the area is relatively stable. Therefore, the physical and chemical parameters of Lake 578 were investigated. Lake water temperature at 2.5 meters (m) (since summer 2017), 5 m, 7.5 m, 10 m, 12.5 m (since summer 2018), and 14 m depth with 6 hour resolution were measured with Onset HOBO UTBI-001 TidbiT temperature data loggers from summer 2016 to summer 2019. Temperature, specific conductivity, pH, and dissolved oxygen were measured with a Hydrolab MS5 in the summers of 2016, 2017, 2018, and 2019.
DOI: 10.18739/a2k649t9v
title: Characterization of plankton communities and associated physicochemical metadata from onshore/offshore transects along the Beaufort Sea Shelf during different upwelling states in August-September 2017

description: DNA samples were collected by filtration of 1.3-4.4 liters (L) of seawater collected from the surface and chlorophyll maximum onto 0.2 micrometer (um) sterivex filters and frozen at sea. Samples were collected from repeat occupations of onshore-offshore transects that occurred before, during, and after wind-driven upwelling events. Following DNA extraction, 18S amplicon sequencing was used to characterize the eukaryotic plankton community (raw sequence data submitted to National Center for Biotechnology Information Sequence Read Archive, NCBI SRA). Additionally, quantitative polymerase chain reaction (qPCR) was used to quantify gene abundance of specific phytoplankton species. This dataset records the sample collection information (date, time, latitude, longitude, station id, conductivity-temperature-depth (CTD) bottle number, depth of sample collection, volume filtered, filter size), pertinent physicochemical metadata from the CTD sensors when each sample was collected (pressure, temperature, salinity, density, fluorescence), qPCR gene abundance, and the ratio of sequencing reads for individual phytoplankton species as a part of the whole phytoplankton community amplicon sequencing read dataset for each sample.
DOI: 10.18739/a2rr1pn74
title: Beaufort Gyre wintertime mixed layer depth and mixed layer properties derived from Ice-Tethered Profiler observations in the Arctic Ocean over 2006-2017

description: This data contains properties of the December – May mixed layer in the Beaufort Gyre region of the Arctic Ocean. Properties, such as the depth and density of the mixed layer base, are derived from Ice-Tethered Profiler observations during 2006-2017. The Ice-Tethered Profiler data were collected and made available by the Ice-Tethered Profiler Program based at the Woods Hole Oceanographic Institution (https://www2.whoi.edu/site/itp/). This is the exact dataset used to investigate interannual variability in wintertime mixed layer depth and density in Cole and Stadler, 2019 (ST Cole, and J Stadler, 2019, Deepening of the winter mixed layer in the Canada Basin, Arctic Ocean over 2006-2017, Journal of Geophysical Research, 124, 4618-4630).
DOI: 10.18739/a2n00zv4s
title: Drained lake basins on the younger outer coastal plain north of Teshekpuk Lake, North Slope, Alaska, 2010-2014

description: This data set covers the younger outer coastal plain north of Teshekpuk Lake, North Slope, Alaska. In this region, drained lake basins are abundant features, covering large parts of the landscape. This data set is based on Landsat Thematic Mapper (TM) imagery acquired in August 2010, and a 5 meter (m) resolution Interferometric Synthetic Aperture Radar (IfSAR)-derived digital terrain model. Drained lake basins were manually delineated in a geographic information system (GIS). The data set includes Lake 195, which drained in this area in 2014. For further details please see Jones et al. (2015): Jones, BM, and Arp, CD (2015), Observing a Catastrophic Thermokarst Lake Drainage in Northern Alaska. Permafrost and Periglac. Process., 26, 119– 128. doi: 10.1002/ppp.1842.
DOI: 10.18739/a2h70821x
title: Ocean eddy diffusivity estimate derived from Beaufort Gyre Observing System mooring observations over 2003-2018, Canada Basin, Arctic Ocean

description: This data contains representative profiles of 1) temperature variance, 2) velocity variance, and 3) mixing length and along-isopycnal eddy diffusivity in the upper 1400 meter (m) of the ocean in the Beaufort Gyre. Each quantity is estimated at four individual mooring locations, and the average across all moorings is also provided. Observations over 2003-2018 are included so that the estimated properties are generally representative of this 15 year time period and the Beaufort Gyre region. This updates in time and extends in depth the estimate published in Menegello et al. 2017 (G Meneghello, J Marshall, ST Cole, M-L Timmermans, 2017, Observational inferences of lateral eddy diffusivity in the halocline of the Beaufort Gyre, Geophysical Research Letters, 44 (24), 12,331-12,338).
DOI: 10.18739/a2cj87m8z
title: Drained lake basins in the area of the 2007 Anaktuvuk River Tundra Fire, North Slope, Alaska

description: This data set covers the Anaktuvuk River fire site and maps drained lake basins in this area as described by Jones et al (2015). The data set is derived from airborne Light Detection and Ranging (LiDAR) data acquired in 2009 and 2014. The classification of drained lake basins is based on digital terrain models (DTMs) created from the classified LiDAR data and using the a topographic position index (TPI). The TPI output was manually categorized relative to existing surficial geology maps and refined into the following terrain units: (1) drained lake basins, (2) yedoma uplands, (3) rocky uplands, (4) glaciated upland, (5) river floodplain and (6) tundra stream gulches. The drained lake basin class is the subject of this data set publication. Jones, B., Grosse, G., Arp, C. et al. Recent Arctic tundra fire initiates widespread thermokarst development. Sci Rep 5, 15865 (2015). https://doi.org/10.1038/srep15865
DOI: 10.3886/e165861
title: Racial-Religious Decoupling in the University

description: The purpose of this study was to examine religious students' experiences with campus diversity climates. Seeking to center marginalized voices and perspectives, this study asks: 1: How are campus religious climates (e.g., religious respect) related to religious students’ perceptions of institutional commitment to diversity? 1a: How do Muslim students describe religious climates in relation to an institutional commitment to diversity? Research Question 2: How are campus racial climates (e.g., racial respect) related to religious students' perceptions of institutional commitment to diversity? 2a: How do Muslim students describe racial climates in relation to an institutional commitment to diversity? Quantitative data for this study comprises of secondary analysis of the 2016 Undergraduate Student Experience Survey (UCUES) (N=63,115) employed online through a modular design that contained questions related to academic program review, demographics, campus climate, use of time, general satisfaction, student life and development, academic engagement, and civic engagement. The 2016 University of California (UC) UCUES surveys over 190,000 undergraduates at UC's nine undergraduate campuses. The 2016 database contains 63,115 final respondents, contributing to an overall response rate of 33%, based on a total of 191,095 invited undergraduates to participate in the survey.
description: Response Rates: 33%
description: The 2016 University of California (UC) UCUES surveys over 190,000 undergraduates at UC's nine undergraduate campuses. The 2016 database contains 63,115 final respondents, contributing to an overall response rate of 33%, based on a total of 191,095 invited undergraduates to participate in the survey. This study draws on a sample size of 39,244, 62% of total respondents that completed the question based on crucial study variables. The subsample of respondents generally reflects gender, ethnicity, applicant status, and student level of all University of California students.
DOI: 10.3886/e165861v1
title: Racial-Religious Decoupling in the University

description: The purpose of this study was to examine religious students' experiences with campus diversity climates. Seeking to center marginalized voices and perspectives, this study asks: 1: How are campus religious climates (e.g., religious respect) related to religious students’ perceptions of institutional commitment to diversity? 1a: How do Muslim students describe religious climates in relation to an institutional commitment to diversity? Research Question 2: How are campus racial climates (e.g., racial respect) related to religious students' perceptions of institutional commitment to diversity? 2a: How do Muslim students describe racial climates in relation to an institutional commitment to diversity? Quantitative data for this study comprises of secondary analysis of the 2016 Undergraduate Student Experience Survey (UCUES) (N=63,115) employed online through a modular design that contained questions related to academic program review, demographics, campus climate, use of time, general satisfaction, student life and development, academic engagement, and civic engagement. The 2016 University of California (UC) UCUES surveys over 190,000 undergraduates at UC's nine undergraduate campuses. The 2016 database contains 63,115 final respondents, contributing to an overall response rate of 33%, based on a total of 191,095 invited undergraduates to participate in the survey.
description: Response Rates: 33%
description: The 2016 University of California (UC) UCUES surveys over 190,000 undergraduates at UC's nine undergraduate campuses. The 2016 database contains 63,115 final respondents, contributing to an overall response rate of 33%, based on a total of 191,095 invited undergraduates to participate in the survey. This study draws on a sample size of 39,244, 62% of total respondents that completed the question based on crucial study variables. The subsample of respondents generally reflects gender, ethnicity, applicant status, and student level of all University of California students.
DOI: 10.25442/hku.19248066
title: Supporting data for the thesis 'The regulation of integrin heterodimer organisation at the reticular adhesion'.

description: This dataset includes the raw data and analysed data in the chapter 3 to chapter 7 of the thesis ''The regulation of integrin heterodimer organisation at the reticular adhesion'. The dataset here mainly investigates on the integrin-mediated reticular adhesion formation and cell migration, which enlarges the understanding of the reticular adhesions and integrin heterodimers. Dataset mainly includes images from TIRF and spinning-disk confocal microscopy and related analysis. The images analysis softwares like imageJ and Imaris are needed to open the raw data.
DOI: 10.25442/hku.19248066.v1
title: Supporting data for the thesis 'The regulation of integrin heterodimer organisation at the reticular adhesion'.

description: This dataset includes the raw data and analysed data in the chapter 3 to chapter 7 of the thesis ''The regulation of integrin heterodimer organisation at the reticular adhesion'. The dataset here mainly investigates on the integrin-mediated reticular adhesion formation and cell migration, which enlarges the understanding of the reticular adhesions and integrin heterodimers. Dataset mainly includes images from TIRF and spinning-disk confocal microscopy and related analysis. The images analysis softwares like imageJ and Imaris are needed to open the raw data.
DOI: 10.25442/hku.19242825
title: Supporting data for: "Exploring And Enhancing Transitional Competences Of Grade One Students Through The Use Of Picture Books"

description: The dataset was collected for the thesis entitled “Exploring And Enhancing Transitional Competences Of Grade One Students Through The Use Of Picture Books”. In order to explore the transitional competences of Grade One students in Hong Kong, a rating tool was developed and preliminarily validated. To enhance the students' transitional competences, a picture book intervention was carried out in a Hong Kong primary school. The data includes survey, students’ tests scores, interviews, and lesson transcripts. Consents from participants were obtained before the study.
DOI: 10.25442/hku.19242825.v1
title: Supporting data for: "Exploring And Enhancing Transitional Competences Of Grade One Students Through The Use Of Picture Books"

description: The dataset was collected for the thesis entitled “Exploring And Enhancing Transitional Competences Of Grade One Students Through The Use Of Picture Books”. In order to explore the transitional competences of Grade One students in Hong Kong, a rating tool was developed and preliminarily validated. To enhance the students' transitional competences, a picture book intervention was carried out in a Hong Kong primary school. The data includes survey, students’ tests scores, interviews, and lesson transcripts. Consents from participants were obtained before the study.
DOI: 10.34820/fk2/p88yur
title: Replication Data for Biomass Refinery using (Bio)compatible Ionic Liquids

description: Converting bagasse into bioethanol uses liquid ionic technology in the pretreatment process.
DOI: 10.25442/hku.19336520
title: Supporting data for Neuroprotective role of α-Melanocyte-stimulating hormone on ischemia/reperfusion-induced brain and retinal damage in type 1 diabetic mouse

description: Persons with type 1 diabetes have an increased risk of stroke compared with the general population. Because vision loss is frequently connected with stroke, it is essential to find a strategy that effectively preserves vision by protecting retina in addition to the brain. α-Melanocyte-stimulating hormone (α-MSH) is a neuropeptide that has protective effects against ischemia/reperfusion (I/R) induced organ damages. In this study, we aimed to investigate the neuroprotective role of α-MSH on I/R-induced brain and retinal damages after experimental stroke associated with hyperglycemia using C57BL/6J Ins2<sup>Akita/+</sup> mice. Experimental stroke was induced by blocking the right middle cerebral artery (MCA) for 2 h with reperfusion for 2 h and 22 h, respectively using the intraluminal method. Since the opening of ophthalmic artery is proximal to the origin of the MCA, blood supply to the retina was also blocked by the filament. Animals were treated intraperitoneally with or without α-MSH at 1 h after ischemia and 1 h after reperfusion. Significantly higher percent survival and lower neurological scores were recorded in animals injected with α-MSH. Similarly, neuron death, glial cells activation as well as oxidative and nitrosative stress were significantly decreased in the α-MSH-treated brains. Relative intensities of matrix metallopeptidases 9, cyclooxygenase 2 and nuclear factor-κB were significantly decreased while intensities of Akt, heme oxygenase (HO) 1, HO-2 and B-cell lymphoma 2 were significantly increased in α-MSH treated brain. In addition, gene expressions of monocarboxylate transporter (MCT) 1, MCT-2 and activity-regulated cytoskeleton-associated protein were significantly higher in brain samples treated with α-MSH, suggesting an involvement of lactate metabolism in α-MSH neuroprotective effects. In the retina, α-MSH significantly increased the amplitude of b-wave as well as oscillatory potentials in electroretinogram, a measure of retinal function. α-MSH also prevented I/R-induced histological alterations and inhibited the development of retinal swelling. Loss of retinal ganglion cells as well as oxidative stress were significantly attenuated in α-MSH-treated diabetic retina after I/R injury. Expression of interleukin 10 was significantly increased in the retina after α-MSH treatment. In addition, gene expression of MCT-1, MCT-2 and glutamate aspartate transporter 1 were significantly higher after α-MSH administration. In conclusion, α-MSH is neuroprotective under hyperglycemic condition against I/R-induced brain and retinal damage by its anti-inflammatory, anti-oxidative and anti-apoptotic properties. These effects of α-MSH may have important therapeutic implication against cerebral and retinal I/R injury under hyperglycemic condition.
DOI: 10.25442/hku.19336520.v1
title: Supporting data for Neuroprotective role of α-Melanocyte-stimulating hormone on ischemia/reperfusion-induced brain and retinal damage in type 1 diabetic mouse

description: Persons with type 1 diabetes have an increased risk of stroke compared with the general population. Because vision loss is frequently connected with stroke, it is essential to find a strategy that effectively preserves vision by protecting retina in addition to the brain. α-Melanocyte-stimulating hormone (α-MSH) is a neuropeptide that has protective effects against ischemia/reperfusion (I/R) induced organ damages. In this study, we aimed to investigate the neuroprotective role of α-MSH on I/R-induced brain and retinal damages after experimental stroke associated with hyperglycemia using C57BL/6J Ins2<sup>Akita/+</sup> mice. Experimental stroke was induced by blocking the right middle cerebral artery (MCA) for 2 h with reperfusion for 2 h and 22 h, respectively using the intraluminal method. Since the opening of ophthalmic artery is proximal to the origin of the MCA, blood supply to the retina was also blocked by the filament. Animals were treated intraperitoneally with or without α-MSH at 1 h after ischemia and 1 h after reperfusion. Significantly higher percent survival and lower neurological scores were recorded in animals injected with α-MSH. Similarly, neuron death, glial cells activation as well as oxidative and nitrosative stress were significantly decreased in the α-MSH-treated brains. Relative intensities of matrix metallopeptidases 9, cyclooxygenase 2 and nuclear factor-κB were significantly decreased while intensities of Akt, heme oxygenase (HO) 1, HO-2 and B-cell lymphoma 2 were significantly increased in α-MSH treated brain. In addition, gene expressions of monocarboxylate transporter (MCT) 1, MCT-2 and activity-regulated cytoskeleton-associated protein were significantly higher in brain samples treated with α-MSH, suggesting an involvement of lactate metabolism in α-MSH neuroprotective effects. In the retina, α-MSH significantly increased the amplitude of b-wave as well as oscillatory potentials in electroretinogram, a measure of retinal function. α-MSH also prevented I/R-induced histological alterations and inhibited the development of retinal swelling. Loss of retinal ganglion cells as well as oxidative stress were significantly attenuated in α-MSH-treated diabetic retina after I/R injury. Expression of interleukin 10 was significantly increased in the retina after α-MSH treatment. In addition, gene expression of MCT-1, MCT-2 and glutamate aspartate transporter 1 were significantly higher after α-MSH administration. In conclusion, α-MSH is neuroprotective under hyperglycemic condition against I/R-induced brain and retinal damage by its anti-inflammatory, anti-oxidative and anti-apoptotic properties. These effects of α-MSH may have important therapeutic implication against cerebral and retinal I/R injury under hyperglycemic condition.
DOI: 10.25442/hku.19336505
title: Supporting data for "Screening and Engineering of Potent and Broad Neutralizing Antibodies against SARS-CoV-2"

description: This dataset is for supporting the thesis entitled "Screening and Engineering of Potent and Broad Neutralizing Antibodies against SARS-CoV-2". It contains all the data that characterized the properties, including binding affinity, binding dynamics, neutralization capability against SARS-CoV-2 <i>in vitro</i>, efficacy in preventing SARS-CoV-2 infection and replication <i>in vivo</i>, of isolated neutralizing antibodies or engineered IgA antibodies and bispecific antibodies.
DOI: 10.25442/hku.19336505.v1
title: Supporting data for "Screening and Engineering of Potent and Broad Neutralizing Antibodies against SARS-CoV-2"

description: This dataset is for supporting the thesis entitled "Screening and Engineering of Potent and Broad Neutralizing Antibodies against SARS-CoV-2". It contains all the data that characterized the properties, including binding affinity, binding dynamics, neutralization capability against SARS-CoV-2 <i>in vitro</i>, efficacy in preventing SARS-CoV-2 infection and replication <i>in vivo</i>, of isolated neutralizing antibodies or engineered IgA antibodies and bispecific antibodies.
DOI: 10.6084/m9.figshare.19358489.v1
title: Supplementary data - Optimization of orally disintegrating tablets containing Centella asiatica solid lipid nanoparticles for supportive therapies of Parkinson's disease

description: The data sets generated from "Optimization of orally disintegrating tablets containing <i>Centella asiatica</i> solid lipid nanoparticles for supportive therapies of Parkinson's disease”submitted to F1000Research<br>
DOI: 10.6084/m9.figshare.19408057
title: Additional file 11 of Genomic sequencing of Thinopyrum elongatum chromosome arm 7EL, carrying fusarium head blight resistance, and characterization of its impact on the transcriptome of the introgressed line CS-7EL

description: Additional file 11.
DOI: 10.6084/m9.figshare.19408057.v1
title: Additional file 11 of Genomic sequencing of Thinopyrum elongatum chromosome arm 7EL, carrying fusarium head blight resistance, and characterization of its impact on the transcriptome of the introgressed line CS-7EL

description: Additional file 11.