cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7305659
title: Additional file 1: of Anti-osteoporotic effects of mixed compositions of extracellular polymers isolated from Aureobasidium pullulans and Textoria morbifera in ovariectomized mice

description: Raw data on body weight gain in sham-operated and OVX mice. OVX: Bilateral ovariectomy; RES: Risedronate sodium; EAP: Exopolymers purified from A. pullulans SM2001; TM: T. morbifera leaf extracts; (EAP:TM): Mixed formula consisted of EAP and TM (g/g). Values are expressed mean ± S.D. of eight mice. *All animals were overnight fasted. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7305662.v1
title: Additional file 3: of Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection

description: Table S2. All competition-phase submissions evaluated with fâ =â 100 and jâ &gt;â 0. (XLS 43 kb)
DOI: 10.6084/m9.figshare.7305659.v1
title: Additional file 1: of Anti-osteoporotic effects of mixed compositions of extracellular polymers isolated from Aureobasidium pullulans and Textoria morbifera in ovariectomized mice

description: Raw data on body weight gain in sham-operated and OVX mice. OVX: Bilateral ovariectomy; RES: Risedronate sodium; EAP: Exopolymers purified from A. pullulans SM2001; TM: T. morbifera leaf extracts; (EAP:TM): Mixed formula consisted of EAP and TM (g/g). Values are expressed mean ± S.D. of eight mice. *All animals were overnight fasted. (XLSX 12 kb)
DOI: 10.7284/132527
title: Gyrocompass data collected during research cruise RR1812 using a iXSea Phins instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132531
title: INS (Inertial Navigation System) data collected during research cruise RR1812 using a Kongsberg Seapath 320+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132520
title: Meteorological Station data collected during research cruise RR1812 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7305641
title: Additional file 2: of Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection

description: Table S1. Challenge participation. (XLS 5 kb)
DOI: 10.6084/m9.figshare.7305641.v1
title: Additional file 2: of Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection

description: Table S1. Challenge participation. (XLS 5 kb)
DOI: 10.7284/132522
title: Multibeam Echosounder data collected during research cruise RR1812 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132526
title: Winch data collected during research cruise RR1812 using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132529
title: Winch data collected during research cruise RR1812 using a Markey DUSH-5 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132625
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1814 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132627
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1814 using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132634
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1814 using a Trimble SPS351 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132637
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1814 using a Furuno GP-170 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132628
title: Gravimeter data collected during research cruise RR1814 using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132631
title: Gyrocompass data collected during research cruise RR1814 using a iXSea Phins instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132635
title: INS (Inertial Navigation System) data collected during research cruise RR1814 using a Kongsberg Seapath 320+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132624
title: Meteorological Station data collected during research cruise RR1814 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7305581
title: Additional file 3:Â Supplementary table S3. of Loss of the Chr16p11.2 ASD candidate gene QPRT leads to aberrant neuronal differentiation in the SH-SY5Y neuronal cell model

description: Results from GO term enrichment analysis.Â (XLSX 36 kb)
DOI: 10.6084/m9.figshare.7305581.v1
title: Additional file 3:Â Supplementary table S3. of Loss of the Chr16p11.2 ASD candidate gene QPRT leads to aberrant neuronal differentiation in the SH-SY5Y neuronal cell model

description: Results from GO term enrichment analysis.Â (XLSX 36 kb)
DOI: 10.7284/132626
title: Multibeam Echosounder data collected during research cruise RR1814 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132636
title: Singlebeam Echosounder data collected during research cruise RR1814 using a Knudsen 3260 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132630
title: Winch data collected during research cruise RR1814 using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7305560
title: Additional file 2:Â Supplementary table S2. of Loss of the Chr16p11.2 ASD candidate gene QPRT leads to aberrant neuronal differentiation in the SH-SY5Y neuronal cell model

description: Results from DESeq2 analysis and count data from RNA-Seq (MACE analysis).Â (XLSX 5308 kb)
DOI: 10.7284/132633
title: Winch data collected during research cruise RR1814 using a Markey DUSH-5 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7305560.v1
title: Additional file 2:Â Supplementary table S2. of Loss of the Chr16p11.2 ASD candidate gene QPRT leads to aberrant neuronal differentiation in the SH-SY5Y neuronal cell model

description: Results from DESeq2 analysis and count data from RNA-Seq (MACE analysis).Â (XLSX 5308 kb)
DOI: 10.7284/132638
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1815 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132639
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1815 using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132645
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1815 using a Trimble SPS351 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132647
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1815 using a Furuno GP-170 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132640
title: Gravimeter data collected during research cruise RR1815 using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132643
title: Gyrocompass data collected during research cruise RR1815 using a iXSea Phins instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132646
title: INS (Inertial Navigation System) data collected during research cruise RR1815 using a Kongsberg Seapath 320+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132642
title: Winch data collected during research cruise RR1815 using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132644
title: Winch data collected during research cruise RR1815 using a Markey DUSH-5 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132677
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1816 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132679
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1816 using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132685
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1816 using a Trimble SPS351 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132687
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1816 using a Furuno GP-170 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7305488
title: Additional file 1: of Exploring the genetic basis of gene transcript abundance and metabolite levels in loblolly pine (Pinus taeda L.) using association mapping and network construction

description: Table S1. Annotation of genes containing SNPs associated with gene expression. Table S2. Annotation of genes containing SNPs associated with metabolite levels. Table S3. Expressed genes and numbers of SNPs associated with them. Table S4. Metabolites and numbers of SNPs associated with them. Table S5. Transcription factor (TF) genes containing SNPs associated with expressed genes and metabolites. (XLSX 1051Â kb)
DOI: 10.6084/m9.figshare.7305488.v1
title: Additional file 1: of Exploring the genetic basis of gene transcript abundance and metabolite levels in loblolly pine (Pinus taeda L.) using association mapping and network construction

description: Table S1. Annotation of genes containing SNPs associated with gene expression. Table S2. Annotation of genes containing SNPs associated with metabolite levels. Table S3. Expressed genes and numbers of SNPs associated with them. Table S4. Metabolites and numbers of SNPs associated with them. Table S5. Transcription factor (TF) genes containing SNPs associated with expressed genes and metabolites. (XLSX 1051Â kb)
DOI: 10.7284/132680
title: Gravimeter data collected during research cruise RR1816 using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132683
title: Gyrocompass data collected during research cruise RR1816 using a iXSea Phins instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132686
title: INS (Inertial Navigation System) data collected during research cruise RR1816 using a Kongsberg Seapath 320+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7305467
title: Additional file 9: of Transposase mapping identifies the genomic targets of BAP1 in uveal melanoma

description: Heatmap data. Gene expression values from published microarray data of primary UM tumors depicted in heatmap in Fig. 5a. Each row gives the gene rank assigned by comparative marker selection, which molecular class shows upregulation, and the name of each gene. Signal-to-noise ratio (SNR), p-values, false discovery rate (FDR), Bonferroni correction, family-wise error rate (FWER), fold change, means and standard deviations were all calculated by the comparative marker selection software. The original expression values from the published data [6] used to assemble the heatmap are included. (XLSX 196 kb)
DOI: 10.6084/m9.figshare.7305467.v1
title: Additional file 9: of Transposase mapping identifies the genomic targets of BAP1 in uveal melanoma

description: Heatmap data. Gene expression values from published microarray data of primary UM tumors depicted in heatmap in Fig. 5a. Each row gives the gene rank assigned by comparative marker selection, which molecular class shows upregulation, and the name of each gene. Signal-to-noise ratio (SNR), p-values, false discovery rate (FDR), Bonferroni correction, family-wise error rate (FWER), fold change, means and standard deviations were all calculated by the comparative marker selection software. The original expression values from the published data [6] used to assemble the heatmap are included. (XLSX 196 kb)
DOI: 10.7284/132676
title: Meteorological Station data collected during research cruise RR1816 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132678
title: Multibeam Echosounder data collected during research cruise RR1816 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132682
title: Winch data collected during research cruise RR1816 using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132684
title: Winch data collected during research cruise RR1816 using a Markey DUSH-5 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132689
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1817 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132702
title: Expendable Probe data collected during research cruise RR1817 using a Turo Quoll instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7305428
title: Additional file 7: of Transposase mapping identifies the genomic targets of BAP1 in uveal melanoma

description: GSEA terms associated with BAP1 target genes. Gene set enrichment analysis based on gene expression values for the 784 genes identified by the combination of &gt;â 2-fold BAP1-sensitive RNA expression changes and calling-card transposon targeting. Each row gives the name of the curated GSEA term, and the nominal enrichment score, p-value, false discovery rate (FDR), family-wise error rate (FWER), and rank-at-max value calculated by the GSEA software. (XLSX 23 kb)
DOI: 10.7284/132691
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1817 using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7305428.v1
title: Additional file 7: of Transposase mapping identifies the genomic targets of BAP1 in uveal melanoma

description: GSEA terms associated with BAP1 target genes. Gene set enrichment analysis based on gene expression values for the 784 genes identified by the combination of &gt;â 2-fold BAP1-sensitive RNA expression changes and calling-card transposon targeting. Each row gives the name of the curated GSEA term, and the nominal enrichment score, p-value, false discovery rate (FDR), family-wise error rate (FWER), and rank-at-max value calculated by the GSEA software. (XLSX 23 kb)
DOI: 10.7284/132698
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1817 using a Trimble SPS351 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132703
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1817 using a Furuno GP-170 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7305410
title: Additional file 2: of Single sample scoring of molecular phenotypes

description: This includes IDs for 500 of the overlapping samples between the TCGA breast cancer RNA-seq and microarray data. (TXT 8 kb)
DOI: 10.6084/m9.figshare.7305407
title: MOESM2 of Demographic consequences of reproductive interference in multi-species communities

description: Additional file 2. Raw data for Caenorhabditis reproductive interference experiments.
DOI: 10.6084/m9.figshare.7305410.v1
title: Additional file 2: of Single sample scoring of molecular phenotypes

description: This includes IDs for 500 of the overlapping samples between the TCGA breast cancer RNA-seq and microarray data. (TXT 8 kb)
DOI: 10.7284/132692
title: Gravimeter data collected during research cruise RR1817 using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7305407.v1
title: MOESM2 of Demographic consequences of reproductive interference in multi-species communities

description: Additional file 2. Raw data for Caenorhabditis reproductive interference experiments.
DOI: 10.7284/132696
title: HDSS (Hydrographic Doppler Sonar System) data collected during research cruise RR1817 using a SIO HDSS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132695
title: Gyrocompass data collected during research cruise RR1817 using a iXSea Phins instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7305389
title: Additional file 5: of Transposase mapping identifies the genomic targets of BAP1 in uveal melanoma

description: BAP1-sensitive calling-card target genes. List of the 784 genes identified by the combination of &gt;â 2-fold BAP1-sensitive RNA expression changes and calling-card transposon targeting. Each row gives the gene name, unique Ensembl identifier, and description for each gene. Linear fold change and adjusted p-value in gene expression are from RNA-seq data. Experimental hops, p-value, and fusion construct data are from the calling card experiments. (XLSX 135 kb)
DOI: 10.7284/132699
title: INS (Inertial Navigation System) data collected during research cruise RR1817 using a Kongsberg Seapath 320+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7305389.v1
title: Additional file 5: of Transposase mapping identifies the genomic targets of BAP1 in uveal melanoma

description: BAP1-sensitive calling-card target genes. List of the 784 genes identified by the combination of &gt;â 2-fold BAP1-sensitive RNA expression changes and calling-card transposon targeting. Each row gives the gene name, unique Ensembl identifier, and description for each gene. Linear fold change and adjusted p-value in gene expression are from RNA-seq data. Experimental hops, p-value, and fusion construct data are from the calling card experiments. (XLSX 135 kb)
DOI: 10.7284/132688
title: Meteorological Station data collected during research cruise RR1817 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132690
title: Multibeam Echosounder data collected during research cruise RR1817 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7305374
title: Additional file 4: of Transposase mapping identifies the genomic targets of BAP1 in uveal melanoma

description: Table summarizing the RNA-seq results. Differential gene expression results in BAP1-knockdown compared to control OCM-1A cells are shown from the RNA-seq data. Each row gives the unique Ensembl identifier, gene name, and description for each gene, as well as the log of the fold change (logFC), average expression, adjusted p-value, and linear fold change. (XLSX 1392 kb)
DOI: 10.7284/132701
title: Multibeam Echosounder data collected during research cruise RR1817 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7305374.v1
title: Additional file 4: of Transposase mapping identifies the genomic targets of BAP1 in uveal melanoma

description: Table summarizing the RNA-seq results. Differential gene expression results in BAP1-knockdown compared to control OCM-1A cells are shown from the RNA-seq data. Each row gives the unique Ensembl identifier, gene name, and description for each gene, as well as the log of the fold change (logFC), average expression, adjusted p-value, and linear fold change. (XLSX 1392 kb)
DOI: 10.7284/132700
title: Singlebeam Echosounder data collected during research cruise RR1817 using a Knudsen 3260 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132694
title: Winch data collected during research cruise RR1817 using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7305356
title: Additional file 2: of Development and reliability assessment of a new quality appraisal tool for cross-sectional studies using biomarker data (BIOCROSS)

description: Dataset and R code. All executed R code and rater results. (TXT 37 kb)
DOI: 10.6084/m9.figshare.7305353
title: Additional file 2: of Transposase mapping identifies the genomic targets of BAP1 in uveal melanoma

description: PBase-BAP1 genomic peaks. List of genomic regions of transposon insertion from the PBase-BAP1 construct giving location, number of insertion events (hops), significance, and nearest gene (Feature). (XLSX 619 kb)