cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.5b8d7w
title: Occurrence Download

description: A dataset containing 31971 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Falcaria vulgaris Bernh.)"
 ]
}

 The dataset includes 31971 records from 453 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164188-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xur8a4
title: Occurrence Download

description: A dataset containing 6675 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Petromyzon marinus Linnaeus, 1758"
 ]
}

 The dataset includes 6675 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066155-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7x3ckz
title: Occurrence Download

description: A dataset containing 2718 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erysimum linifolium (Pers.) J.Gay"
 ]
}

 The dataset includes 2718 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0149352-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.49vfkg
title: Occurrence Download

description: A dataset containing 2333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Anthocharis cardamines (Linnaeus, 1758)",
 "Year 1970-2000"
 ]
}

 The dataset includes 2333 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164206-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9g8xsz
title: Occurrence Download

description: A dataset containing 2011 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Occurrence evidence)",
 "Country is Greece",
 "OccurrenceStatus is Present",
 "TaxonKey is Aythya nyroca (Güldenstädt, 1770)",
 "Year 1990-2022"
 ]
}

 The dataset includes 2011 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241032-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5judqw
title: Occurrence Download

description: A dataset containing 222 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erysimum macilentum Bunge"
 ]
}

 The dataset includes 222 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0149354-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w6c624
title: Occurrence Download

description: A dataset containing 267 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is A nest-site survey of Barn swallow at railroad stations in the Kinki District,south-central Japan",
 "Geometry POLYGON((117.35277 27.24421,153.64723 27.24421,153.64723 41.75579,117.35277 41.75579,117.35277 27.24421))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 267 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241035-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7gs7me
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erysimum marshallii Bois"
 ]
}

 The dataset includes 47 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0149368-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fhvgz5
title: Occurrence Download

description: A dataset containing 533 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Poland",
 "OccurrenceStatus is Present",
 "TaxonKey is Datura stramonium L."
 ]
}

 The dataset includes 533 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164211-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ezak9h
title: Occurrence Download

description: A dataset containing 3489 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hippolais polyglotta (Vieillot, 1817)",
 "DatasetKey is Observation.org, Nature data from around the World",
 "Country is one of (Germany, France, Spain, Portugal, Denmark, Austria, Italy, Switzerland, Greece, Poland, Hungary, Slovenia, Sweden, Norway, Slovakia, Montenegro, Croatia, North Macedonia, Serbia, Iceland, Ireland, United Kingdom of Great Britain and Northern Ireland, Albania, Bosnia and Herzegovina, Bulgaria)"
 ]
}

 The dataset includes 3489 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0155308-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.amf8gm
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erysimum ponticum Hausskn. & Bornm."
 ]
}

 The dataset includes 26 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0149375-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v563cq
title: Occurrence Download

description: A dataset containing 1464 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA.13.790_2",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 1992-2022"
 ]
}

 The dataset includes 1464 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164217-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zf6yh
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cercopithecus erythrogaster Gray, 1866"
 ]
}

 The dataset includes 59 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241259-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qqy5bn
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Capsella tasmanica (Hook.) F.Muell."
 ]
}

 The dataset includes 9 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0149371-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r75z3g
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA.13.248_2",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 1992-2022"
 ]
}

 The dataset includes 75 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164222-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z3dc9j
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rorippa hybosperma (O.E.Schulz) Jonsell"
 ]
}

 The dataset includes 25 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0155341-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yk8djw
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is RUS.9_1",
 "TaxonKey is Fagopyrum esculentum Moench"
 ]
}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0149377-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zw3gfv
title: Occurrence Download

description: A dataset containing 219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Liliopsida)",
 "Year is greater than or equal to 2012",
 "Year is less than or equal to 2022",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-70.5180549 -33.07499999999999, -70.55250889999999 -33.032782, -70.5655639 -32.9939, -70.60667289999999 -32.9609729, -70.65807289999999 -32.945282, -70.75168189999999 -32.92529090000001, -70.8900089 -32.9255639, -71.0049999 -32.962782, -71.0255549 -32.9713909, -71.0347268 -33.00860889999999, -71.02221779999999 -33.053891, -71.0181908 -33.179591, -71.0439719 -33.1940934, -70.9388111 -33.27421590000001, -70.8429074 -33.3621276, -70.77097959999999 -33.4260634, -70.67507590000001 -33.4100795, -70.6191321 -33.27421590000001, -70.5871642 -33.1703202, -70.51698349999999 -33.075075, -70.5180549 -33.07499999999999))"
 ]
}

 The dataset includes 219 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0171338-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s36cau
title: Occurrence Download

description: A dataset containing 390 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "HasGeospatialIssue is false",
 "TaxonKey is Abies pinsapo Boiss."
 ]
}

 The dataset includes 390 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241037-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.su8k2q
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erysimum pseudocuspidatum Polatschek"
 ]
}

 The dataset includes 41 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0149380-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7sfr28
title: Occurrence Download

description: A dataset containing 115459 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sanguisorba officinalis L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "Year is greater than or equal to 1990",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 115459 records from 620 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164192-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2a8teb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Iberis obovata L."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0149373-220831081235567/datasets/export for details.
DOI: 10.15468/dl.xadmbj
title: Occurrence Download

description: A dataset containing 1939 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dioscorea pentaphylla L."
 ]
}

 The dataset includes 1939 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241041-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.57ua25
title: Occurrence Download

description: A dataset containing 4207 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA.25.329_2",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 1992-2022"
 ]
}

 The dataset includes 4207 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164226-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2pvke4
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erysimum pseudopurpureum Polatschek"
 ]
}

 The dataset includes 14 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0149381-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3k29je
title: Occurrence Download

description: A dataset containing 3086 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anisoplia Fischer Von Waldheim, 1824"
 ]
}

 The dataset includes 3086 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241040-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18600807
title: malva_wigandii_spades_02.fasta.gz
DOI: 10.5281/zenodo.18600808
title: malva_wigandii_spades_02.fasta.gz
DOI: 10.15468/dl.bezdb3
title: Occurrence Download

description: A dataset containing 102936 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saucerottia beryllina"
 ]
}

 The dataset includes 102936 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006163-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ychy8
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Revision of the black fungus gnat species (Diptera: Sciaridae) described by W. A. Steffan from Micronesia"
 ]
}

 The dataset includes 35 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006234-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x9aagx
title: Occurrence Download

description: A dataset containing 477 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aglaia lawii lawii",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 477 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006232-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j3yyxt
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liolaemus talampaya"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006235-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13012/b2idb-5929348_v1
title: study of liquid suction cup detachment mechanism

description: The uploaded data is part of the paper titled: Self-Modifying Percolation Governs Detachment in Soft Suction Wet Adhesion, which shows the detachment mechanism of liquid suction-based adhesion.
DOI: 10.5281/zenodo.18172547
title: The data for "HD 164604 c: a second giant planet on a 15-yr orbit and the constraint of the planet-planet mutual inclination"

description: This file contains radial-velocity (RV) data as well as astrometric measurements from both Hipparcos and Gaia for the star HD 164604. It also provides the RV + astrometry code needed to reproduce the orbital solution of the HD 164604 planetary system.

File description:

RVAst_mcmc_v18.1.py: the source code to perform joint fitting of radial velocity (RV), eclipse timing variation(ETV) and Hipparcos-Gaia astrometry data. The detailed methodology are presented in Feng et.al (2023) and Xiao et.al (2024).

*_posterior_*.txt: the posterior distribution of fitting parameters generated by the code. The basic fitting parameters include the orbital period, RV semi-amplitude, eccentricity, argument of periastron of stellar reflex motion, orbital inclination, longitude of ascending node, mean anomaly at the minimum epoch of RV data and five astrometric offsets  of barycenter relative to GDR3. 

*png/pdf: resulting figures.

*vels/dat: RV data from PFS and MIKE.

*gost.csv:  the synthetic Gaia epoch data generated from Gaia Observation Forecast Tool 

*hip2.abs: Hipparcos Intermediate Astrometric Data (IAD)

*hg123: Astrometric measurements of HIpparcos and Gaia DR2 & DR3

Additional auxiliary files are provided in the HD164604/data directory.

RVAst_mcmc_v18.1.py:

############################## Global configuration ############################target       = 'HD164604'nplanet      = 2RV_Enable    = True # if True, then RV model will be usedTTV_Enable   = False  # Light travel time effect (LTTE) model,see https://zenodo.org/records/17986248GDR4_Enable  = False  # Only for systems with Gaia DR4 epoch astrometry, e.g. GaiaBH3, see https://zenodo.org/records/17986248HGAst_Enable = True  # hiparcos-Gaia astrometry

####### do not recommmend ######corr_GDR23     = False           # if True, then use GDR2-DR3 correlation of Thompson et al. 2025 (doi: 10.3847/1538-3881/ae0cbd) calibrate_rui  = False              # if True, you should provide Gaia Gmag and color for the target. The frame rotation between Hipparcos and Gaia will be corrected using the recommendation of Feng et al. 2024 (doi: 10.3847/1538-4365/ad27d2)

############################## PTmcmc ######################################:  ndim        = len(new_index) ntemps   = 30 nwalkers = max(100, 2*(ndim+1)) # The number of walkers must be greater than ``2*dimension`` nsteps   = 80000  # steps for each chain thin        = 200    # reserved steps for 1 walker -> nsteps/thin buin       = min(200, int(nsteps/thin/2))    # should < nsteps/thin, total saved sample: nwalkers*(nsteps/thin-buin) nthreads = 32          # about 2 hours for a target

Please feel free to contact us (gyxiao_tdli@sjtu.edu.cn or ffeng@sjtu.edu.cn) if you have any questions about the use of this script.
DOI: 10.5281/zenodo.18172546
title: The data for "HD 164604 c: a second giant planet on a 15-yr orbit and the constraint of the planet-planet mutual inclination"

description: This file contains radial-velocity (RV) data as well as astrometric measurements from both Hipparcos and Gaia for the star HD 164604. It also provides the RV + astrometry code needed to reproduce the orbital solution of the HD 164604 planetary system.

File description:

RVAst_mcmc_v18.1.py: the source code to perform joint fitting of radial velocity (RV), eclipse timing variation(ETV) and Hipparcos-Gaia astrometry data. The detailed methodology are presented in Feng et.al (2023) and Xiao et.al (2024).

*_posterior_*.txt: the posterior distribution of fitting parameters generated by the code. The basic fitting parameters include the orbital period, RV semi-amplitude, eccentricity, argument of periastron of stellar reflex motion, orbital inclination, longitude of ascending node, mean anomaly at the minimum epoch of RV data and five astrometric offsets  of barycenter relative to GDR3. 

*png/pdf: resulting figures.

*vels/dat: RV data from PFS and MIKE.

*gost.csv:  the synthetic Gaia epoch data generated from Gaia Observation Forecast Tool 

*hip2.abs: Hipparcos Intermediate Astrometric Data (IAD)

*hg123: Astrometric measurements of HIpparcos and Gaia DR2 & DR3

Additional auxiliary files are provided in the HD164604/data directory.

RVAst_mcmc_v18.1.py:

############################## Global configuration ############################target       = 'HD164604'nplanet      = 2RV_Enable    = True # if True, then RV model will be usedTTV_Enable   = False  # Light travel time effect (LTTE) model,see https://zenodo.org/records/17986248GDR4_Enable  = False  # Only for systems with Gaia DR4 epoch astrometry, e.g. GaiaBH3, see https://zenodo.org/records/17986248HGAst_Enable = True  # hiparcos-Gaia astrometry

####### do not recommmend ######corr_GDR23     = False           # if True, then use GDR2-DR3 correlation of Thompson et al. 2025 (doi: 10.3847/1538-3881/ae0cbd) calibrate_rui  = False              # if True, you should provide Gaia Gmag and color for the target. The frame rotation between Hipparcos and Gaia will be corrected using the recommendation of Feng et al. 2024 (doi: 10.3847/1538-4365/ad27d2)

############################## PTmcmc ######################################:  ndim        = len(new_index) ntemps   = 30 nwalkers = max(100, 2*(ndim+1)) # The number of walkers must be greater than ``2*dimension`` nsteps   = 80000  # steps for each chain thin        = 200    # reserved steps for 1 walker -> nsteps/thin buin       = min(200, int(nsteps/thin/2))    # should < nsteps/thin, total saved sample: nwalkers*(nsteps/thin-buin) nthreads = 32          # about 2 hours for a target

Please feel free to contact us (gyxiao_tdli@sjtu.edu.cn or ffeng@sjtu.edu.cn) if you have any questions about the use of this script.
DOI: 10.15468/dl.ek95dm
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "GadmGid is USA.32_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Lepus townsendii"
 ]
}

 The dataset includes 59 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006237-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60586/snt592.hrqp.637
title: 10X Multiome data from the liver of a 88 year-old white male