cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9756329.v1
title: Additional file 1: of What is the quality of clinical practice guidelines for the treatment of acute lateral ankle ligament sprains in adults? A systematic review

description: Search Strategy and List of Articles. (XLSX 23 kb)
DOI: 10.25387/g3.12858206.v1
title: Supplemental Material for Wang et al., 2020

description: Table S1 Illumina sequencing reads used for genome size estimation and the correction of the genome assembly；Table S2 Size distributions of the PacBio subreads；Table S3 Statistical details of the PacBio subreads；Table S4 The initial C. mollissima assembly, as generated by different tools；Table S5 Statistical details of the Hi-C library data；Table S6 Details of the alignment of the clean Hi-C data to the initial assembly；Table S7 Statistical details of all types of Hi-C sequencing pairs；Table S8 Evaluation using BUSCO；Table S9 Alignment of the Illumina reads to the C. mollissima genome assembly；Table S10 Functional annotation of the predicted protein-coding genes；Table S11 Castanea mollissima gene prediction；Table S12 Statistical details of the identified genes；Table S13 Statistical details of the identified repeat sequences；Fig S1. Distribution of subread lengths；Figure S2 Nineteen-k-mer estimation of genome size；Fig S3 Differences in the genes predicted by the Ab initio, homolog, and RNA-sequencing methods；<br>
DOI: 10.6084/m9.figshare.9756320
title: MOESM1 of Significance of circulating microRNAs in diabetes mellitus type 2 and platelet reactivity: bioinformatic analysis and review

description: Additional file 1. Additional characteristics of microRNA studies in T2DM.
DOI: 10.6084/m9.figshare.9756320.v1
title: MOESM1 of Significance of circulating microRNAs in diabetes mellitus type 2 and platelet reactivity: bioinformatic analysis and review

description: Additional file 1. Additional characteristics of microRNA studies in T2DM.
DOI: 10.6084/m9.figshare.9756161
title: Additional file 2: of Human metapneumovirus prevalence and patterns of subgroup persistence identified through surveillance of pediatric pneumonia hospital admissions in coastal Kenya, 2007â 2016

description: Panel A and B, GenBank accession numbers for global contemporaneous F (714) and G (500) gene sequences retrieved from GenBank. Panel C, GenBank accession numbers for Kilifi sequences detected by alternative rt-PCR assay. (CSV 11 kb)
DOI: 10.6084/m9.figshare.9756161.v1
title: Additional file 2: of Human metapneumovirus prevalence and patterns of subgroup persistence identified through surveillance of pediatric pneumonia hospital admissions in coastal Kenya, 2007â 2016

description: Panel A and B, GenBank accession numbers for global contemporaneous F (714) and G (500) gene sequences retrieved from GenBank. Panel C, GenBank accession numbers for Kilifi sequences detected by alternative rt-PCR assay. (CSV 11 kb)
DOI: 10.6084/m9.figshare.9756137
title: Additional file 9: of Minor intron splicing revisited: identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns

description: Table S1. Minor intron coordinates. Contains the coordinates of the identified minor introns in mouse and human, as reported on MIDB. (XLSX 85 kb)
DOI: 10.6084/m9.figshare.9756137.v1
title: Additional file 9: of Minor intron splicing revisited: identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns

description: Table S1. Minor intron coordinates. Contains the coordinates of the identified minor introns in mouse and human, as reported on MIDB. (XLSX 85 kb)
DOI: 10.6084/m9.figshare.9756095
title: Additional file 16: of Minor intron splicing revisited: identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns

description: Table S8. RNAseq sample information. Contains information on sequencing depth and mapping percentage of all RNAseq samples used. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9756089
title: Additional file 14: of Minor intron splicing revisited: identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns

description: Table S6. Flanking major intron retention. Contains the MSI values of retained upstream and downstream major introns flanking the minor intron. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.9756092
title: Additional file 15: of Minor intron splicing revisited: identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns

description: Table S7. Alternative splicing around minor introns. Contains the MSI values of alternatively spliced minor introns in mouse and human. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.9756086
title: Additional file 13: of Minor intron splicing revisited: identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns

description: Table S5. Minor intron retention. Contains the MSI values of retained minor introns across tissues. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.9756086.v1
title: Additional file 13: of Minor intron splicing revisited: identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns

description: Table S5. Minor intron retention. Contains the MSI values of retained minor introns across tissues. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.9756092.v1
title: Additional file 15: of Minor intron splicing revisited: identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns

description: Table S7. Alternative splicing around minor introns. Contains the MSI values of alternatively spliced minor introns in mouse and human. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.9756095.v1
title: Additional file 16: of Minor intron splicing revisited: identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns

description: Table S8. RNAseq sample information. Contains information on sequencing depth and mapping percentage of all RNAseq samples used. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9756080
title: Additional file 12: of Minor intron splicing revisited: identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns

description: Table S4. Functional annotation. Contains the functional annotations enriched for by the UpSignature and DownSignature of mouse tissues. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.9756089.v1
title: Additional file 14: of Minor intron splicing revisited: identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns

description: Table S6. Flanking major intron retention. Contains the MSI values of retained upstream and downstream major introns flanking the minor intron. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.9756080.v1
title: Additional file 12: of Minor intron splicing revisited: identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns

description: Table S4. Functional annotation. Contains the functional annotations enriched for by the UpSignature and DownSignature of mouse tissues. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.9756074
title: Additional file 11: of Minor intron splicing revisited: identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns

description: Table S3. MIG expression. Contains the expression of MIGs across mouse and human tissues in TPM. (XLSX 208 kb)
DOI: 10.6084/m9.figshare.9756065
title: Additional file 10: of Minor intron splicing revisited: identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns

description: Table S2. MIG orthologs. Contains information on MIG orthologs between mouse and human. (XLSX 81 kb)
DOI: 10.6084/m9.figshare.9756074.v1
title: Additional file 11: of Minor intron splicing revisited: identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns

description: Table S3. MIG expression. Contains the expression of MIGs across mouse and human tissues in TPM. (XLSX 208 kb)
DOI: 10.6084/m9.figshare.9756065.v1
title: Additional file 10: of Minor intron splicing revisited: identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns

description: Table S2. MIG orthologs. Contains information on MIG orthologs between mouse and human. (XLSX 81 kb)
DOI: 10.6084/m9.figshare.9756050
title: Additional file 2: of SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events

description: Table S1. (ID classification): Small insertions and deletions are classified into 83 mutational channels. This classification considers the size of the ID and the repeat size surrounding the event. Events that are 1bp in length are classified by their pyrimidine base (C or T) and the number of repeated bases surrounding the event. Indels longer than 1bp are classified by the length of the event and the number of surrounding repeated units. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.9756044
title: Additional file 1: of SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events

description: Table S1. (DBS classification): Double Base Substitutions are classified into 78 mutational channels. The complete list of possible DBS is bulky, therefore, previous studies use the maximum pyrimidine context to collapse the number of possible mutation types. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9756050.v1
title: Additional file 2: of SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events

description: Table S1. (ID classification): Small insertions and deletions are classified into 83 mutational channels. This classification considers the size of the ID and the repeat size surrounding the event. Events that are 1bp in length are classified by their pyrimidine base (C or T) and the number of repeated bases surrounding the event. Indels longer than 1bp are classified by the length of the event and the number of surrounding repeated units. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.9756041
title: MOESM4 of SAR and QSAR modeling of a large collection of LD50 rat acute oral toxicity data

description: Additional file 4. The list of descriptors used for models derivation are included.
DOI: 10.6084/m9.figshare.9756032
title: MOESM3 of SAR and QSAR modeling of a large collection of LD50 rat acute oral toxicity data

description: Additional file 2. Tables S1 and S2 including experimental values and predictions of models for TS and ES are included.
DOI: 10.6084/m9.figshare.9756035
title: MOESM1 of SAR and QSAR modeling of a large collection of LD50 rat acute oral toxicity data

description: Additional file 3. Tables S3a and S3b with lists of SMARTS implemented in SARpy are included.
DOI: 10.6084/m9.figshare.9756044.v1
title: Additional file 1: of SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events

description: Table S1. (DBS classification): Double Base Substitutions are classified into 78 mutational channels. The complete list of possible DBS is bulky, therefore, previous studies use the maximum pyrimidine context to collapse the number of possible mutation types. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9756029
title: MOESM5 of Semi-field evaluation of the cumulative effects of a “Lethal House Lure” on malaria mosquito mortality

description: Additional file 5. Cumulative mortality over four nights. This data files gives the cumulative proportion of dead mosquitoes over four nights regarding the hut treatment and mosquito age.
DOI: 10.6084/m9.figshare.9756029.v1
title: MOESM5 of Semi-field evaluation of the cumulative effects of a “Lethal House Lure” on malaria mosquito mortality

description: Additional file 5. Cumulative mortality over four nights. This data files gives the cumulative proportion of dead mosquitoes over four nights regarding the hut treatment and mosquito age.
DOI: 10.6084/m9.figshare.9756032.v1
title: MOESM3 of SAR and QSAR modeling of a large collection of LD50 rat acute oral toxicity data

description: Additional file 2. Tables S1 and S2 including experimental values and predictions of models for TS and ES are included.
DOI: 10.6084/m9.figshare.9756041.v1
title: MOESM4 of SAR and QSAR modeling of a large collection of LD50 rat acute oral toxicity data

description: Additional file 4. The list of descriptors used for models derivation are included.
DOI: 10.6084/m9.figshare.9756020
title: MOESM4 of Semi-field evaluation of the cumulative effects of a “Lethal House Lure” on malaria mosquito mortality

description: Additional file 4. Cumulative mortality over two nights. This data files gives the cumulative proportion of dead mosquitoes over two nights regarding the hut treatment and mosquito age.
DOI: 10.6084/m9.figshare.9756020.v1
title: MOESM4 of Semi-field evaluation of the cumulative effects of a “Lethal House Lure” on malaria mosquito mortality

description: Additional file 4. Cumulative mortality over two nights. This data files gives the cumulative proportion of dead mosquitoes over two nights regarding the hut treatment and mosquito age.
DOI: 10.6084/m9.figshare.9756011
title: MOESM3 of Semi-field evaluation of the cumulative effects of a “Lethal House Lure” on malaria mosquito mortality

description: Additional file 3. Cumulative recapture over four nights. This data files gives the cumulative proportion of mosquitoes entering huts over four nights regarding the hut treatment and mosquito age.
DOI: 10.6084/m9.figshare.9756011.v1
title: MOESM3 of Semi-field evaluation of the cumulative effects of a “Lethal House Lure” on malaria mosquito mortality

description: Additional file 3. Cumulative recapture over four nights. This data files gives the cumulative proportion of mosquitoes entering huts over four nights regarding the hut treatment and mosquito age.
DOI: 10.6084/m9.figshare.9755999
title: MOESM1 of Semi-field evaluation of the cumulative effects of a “Lethal House Lure” on malaria mosquito mortality

description: Additional file 1. Scavenging on dead mosquitoes. This data file gives the number of dead mosquito cadavers recaptured out of the 250 dead mosquito cadavers released the night before. It helps estimating the scavenging on dead mosquitoes by ants.
DOI: 10.6084/m9.figshare.9756002
title: MOESM2 of Semi-field evaluation of the cumulative effects of a “Lethal House Lure” on malaria mosquito mortality

description: Additional file 2. Cumulative recapture over two nights. This data files gives the cumulative proportion of mosquitoes entering huts over two nights regarding the hut treatment and mosquito age.
DOI: 10.6084/m9.figshare.9755999.v1
title: MOESM1 of Semi-field evaluation of the cumulative effects of a “Lethal House Lure” on malaria mosquito mortality

description: Additional file 1. Scavenging on dead mosquitoes. This data file gives the number of dead mosquito cadavers recaptured out of the 250 dead mosquito cadavers released the night before. It helps estimating the scavenging on dead mosquitoes by ants.
DOI: 10.6084/m9.figshare.9756002.v1
title: MOESM2 of Semi-field evaluation of the cumulative effects of a “Lethal House Lure” on malaria mosquito mortality

description: Additional file 2. Cumulative recapture over two nights. This data files gives the cumulative proportion of mosquitoes entering huts over two nights regarding the hut treatment and mosquito age.
DOI: 10.6084/m9.figshare.9755984
title: The analysis of the Coriolis interactions in the <i>v</i><sub>10</sub> = 1, <i>v</i><sub>7</sub> = 1 and <i>v</i><sub>4</sub> = 1 triad rovibrational states of <sup>13</sup>C<sub>2</sub>D<sub>4</sub> by high-resolution FTIR spectroscopy

description: The high-resolution Fourier transform infrared spectra of the <i>B</i>-type ν10 and <i>C</i>-type ν7 bands of <sup>13</sup>C<sub>2</sub>D<sub>4</sub> were recorded for the first time at a resolution of 0.0019 cm<sup>−1</sup> in the 515–825 cm<sup>−1</sup> region. The v10=1, v7=1 and v4=1 states are coupled through <i>a</i>-, <i>b</i>- and <i>c</i>-axes Coriolis resonances. Local perturbations between v7=1 and v4=1 rendered some transitions in the infrared inactive ν4 band sufficiently intense for analysis. A total of 6379 infrared transitions (4684 of ν7, 1511 of ν10 and 184 of ν4) were assigned for the first time and fitted with an rms deviation of 0.00042 cm<sup>−1</sup>, with a Hamiltonian containing Watson-type rotational terms in the Ir representation and <i>A</i>-reduction in the diagonal ν blocks and eight off-diagonal Coriolis terms to derive precise rovibrational constants for the upper states. Ground state spectroscopic constants up to sextic terms were also derived from a fit of 5266 ground state combination differences (GSCDs) with an rms deviation of 0.00045 cm<sup>−1</sup>, from infrared transitions of the present analysis and those determined previously. The experimental constants of the ground and upper states compared favourably to the theoretically calculated constants using the cc-pVQZ basis set at MP2 and B3LYP levels.
DOI: 10.6084/m9.figshare.9755963
title: Genetic connectivity of the sky emperor, Lethrinus mahsena populations across a gradient of exploitation rates in coastal Kenya.

description: This is a Plink binary files consisting of .ped and .fam. The SNPs were generated at Diversity Array Technology (DArT). Also uploaded is the original data from DArT. The data supports conclusions in the article <b>"Genetic connectivity of the sky emperor, <i>Lethrinus mahsena </i>populations across a gradient of exploitation rates in coastal Kenya".</b>
DOI: 10.6084/m9.figshare.9755984.v1
title: The analysis of the Coriolis interactions in the <i>v</i><sub>10</sub> = 1, <i>v</i><sub>7</sub> = 1 and <i>v</i><sub>4</sub> = 1 triad rovibrational states of <sup>13</sup>C<sub>2</sub>D<sub>4</sub> by high-resolution FTIR spectroscopy

description: The high-resolution Fourier transform infrared spectra of the <i>B</i>-type ν10 and <i>C</i>-type ν7 bands of <sup>13</sup>C<sub>2</sub>D<sub>4</sub> were recorded for the first time at a resolution of 0.0019 cm<sup>−1</sup> in the 515–825 cm<sup>−1</sup> region. The v10=1, v7=1 and v4=1 states are coupled through <i>a</i>-, <i>b</i>- and <i>c</i>-axes Coriolis resonances. Local perturbations between v7=1 and v4=1 rendered some transitions in the infrared inactive ν4 band sufficiently intense for analysis. A total of 6379 infrared transitions (4684 of ν7, 1511 of ν10 and 184 of ν4) were assigned for the first time and fitted with an rms deviation of 0.00042 cm<sup>−1</sup>, with a Hamiltonian containing Watson-type rotational terms in the Ir representation and <i>A</i>-reduction in the diagonal ν blocks and eight off-diagonal Coriolis terms to derive precise rovibrational constants for the upper states. Ground state spectroscopic constants up to sextic terms were also derived from a fit of 5266 ground state combination differences (GSCDs) with an rms deviation of 0.00045 cm<sup>−1</sup>, from infrared transitions of the present analysis and those determined previously. The experimental constants of the ground and upper states compared favourably to the theoretically calculated constants using the cc-pVQZ basis set at MP2 and B3LYP levels.
DOI: 10.6084/m9.figshare.9755963.v2
title: Genetic connectivity of the sky emperor, Lethrinus mahsena populations across a gradient of exploitation rates in coastal Kenya.

description: This is a Plink binary files consisting of .ped and .fam. The SNPs were generated at Diversity Array Technology (DArT). Also uploaded is the original data from DArT. The data supports conclusions in the article <b>"Genetic connectivity of the sky emperor, <i>Lethrinus mahsena </i>populations across a gradient of exploitation rates in coastal Kenya".</b>
DOI: 10.6084/m9.figshare.9755963.v1
title: Genetic connectivity of the sky emperor, Lethrinus mahsena populations across a gradient of exploitation rates in coastal Kenya.

description: This is a Plink binary files consisting of .ped and .fam. The SNPs were generated at Diversity Array Technology (DArT). The data supports conclusions in the article <b>"Genetic connectivity of the sky emperor, <i>Lethrinus mahsena </i>populations across a gradient of exploitation rates in coastal Kenya".</b>
DOI: 10.6084/m9.figshare.9755486
title: perovskites

description: <pre>Matbench v0.1 test dataset for predicting formation energy from crystal structure. Adapted from an original dataset generated by Castelli et al.</pre>
DOI: 10.6084/m9.figshare.9755483
title: dielectric

description: <pre>Matbench v0.1 test dataset for predicting refractive index from structure. Adapted from Materials Project database. Removed entries having a formation energy (or energy above the convex hull) more than 150meV and those having refractive indices less than 1 and those containing noble gases. Retrieved April 2, 2019.</pre>
DOI: 10.6084/m9.figshare.9755483.v1
title: dielectric

description: <pre>Matbench v0.1 test dataset for predicting refractive index from structure. Adapted from Materials Project database. Removed entries having a formation energy (or energy above the convex hull) more than 150meV and those having refractive indices less than 1 and those containing noble gases. Retrieved April 2, 2019.</pre>
DOI: 10.6084/m9.figshare.9755477
title: log_kvrh

description: <pre>Matbench v0.1 test dataset for predicting DFT log10 VRH-average bulk modulus from structure. Adapted from Materials Project database. Removed entries having a formation energy (or energy above the convex hull) more than 150meV and those having negative G_Voigt, G_Reuss, G_VRH, K_Voigt, K_Reuss, or K_VRH and those failing G_Reuss &lt;= G_VRH &lt;= G_Voigt or K_Reuss &lt;= K_VRH &lt;= K_Voigt and those containing noble gases. Retrieved April 2, 2019.</pre>
DOI: 10.6084/m9.figshare.9755480
title: log_gvrh

description: <pre>Matbench v0.1 test dataset for predicting DFT log10 VRH-average shear modulus from structure. Adapted from Materials Project database. Removed entries having a formation energy (or energy above the convex hull) more than 150meV and those having negative G_Voigt, G_Reuss, G_VRH, K_Voigt, K_Reuss, or K_VRH and those failing G_Reuss &lt;= G_VRH &lt;= G_Voigt or K_Reuss &lt;= K_VRH &lt;= K_Voigt and those containing noble gases. Retrieved April 2, 2019.</pre>
DOI: 10.6084/m9.figshare.9755462
title: jdft2d

description: <pre>Matbench v0.1 test dataset for predicting exfoliation energies from crystal structure (computed with the OptB88vdW and TBmBJ functionals). Adapted from the JARVIS DFT database.</pre>
DOI: 10.6084/m9.figshare.9755480.v1
title: log_gvrh

description: <pre>Matbench v0.1 test dataset for predicting DFT log10 VRH-average shear modulus from structure. Adapted from Materials Project database. Removed entries having a formation energy (or energy above the convex hull) more than 150meV and those having negative G_Voigt, G_Reuss, G_VRH, K_Voigt, K_Reuss, or K_VRH and those failing G_Reuss &lt;= G_VRH &lt;= G_Voigt or K_Reuss &lt;= K_VRH &lt;= K_Voigt and those containing noble gases. Retrieved April 2, 2019.</pre>