cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7602240
title: Nanostructured Hydrotropes Caged Cytochrome c with Boosted Stability in Harsh Environments: A Molecular Insights

description: The input and main output files used for the paper <em><strong>"Nanostructured Hydrotropes Caged Cytochrome c with Boosted Stability in Harsh Environments: A Molecular Insights"</strong></em> are separated in the different tar files.
DOI: 10.5281/zenodo.7607360
title: Nano-structured Hydrotrope-Caged Cytochrome c with Boosted Stability in Harsh Environments: A Molecular Insight

description: The input and main output files used for the paper <em><strong>"Nanostructured Hydrotropes Caged Cytochrome c with Boosted Stability in Harsh Environments: A Molecular Insights"</strong></em> are separated in the different tar files. <strong>Contents:</strong> 00_packmol : box built using PACKMOL package for ATP, IL and ATP_IL systems 01_Build_systems : parameters and input files for WAT, ATP, IL and ATP_IL systems 02_Minimization_Equilibration_RT : minimization and equilibration inputs, restarts and output files for WAT, ATP, IL and ATP_IL systems at 300K 03_Minimization_Equilibration_HT : minimization and equilibration inputs, restarts and output files for WAT, ATP, IL and ATP_IL systems at 363.15K 04_HTMD_Cytc_WAT_RT : HTMD input, restarts and output files for Cyt c + WAT system at 300K 05_HTMD_Cytc_ATP_RT : HTMD input, restarts and output files for Cyt c + ATP system at 300K 06_HTMD_Cytc_IL_RT : HTMD input, restarts and output files for Cyt c + IL system at 300K 07_HTMD_Cytc_ATP_IL_RT : HTMD input, restarts and output files for Cyt c + ATP_IL system at 300K 08_HTMD_Cytc_WAT_HT : HTMD input, restarts and output files for Cyt c + WAT system at 363.15K 09_HTMD_Cytc_ATP_HT : HTMD input, restarts and output files for Cyt c + ATP system at 363.15K 10_HTMD_Cytc_IL_HT : HTMD input, restarts and output files for Cyt c + IL system at 363.15K 11_HTMD_Cytc_ATP_IL_HT : HTMD input, restarts and output files for Cyt c + ATP_IL system at 363.15K 12_HTMD_MD_analysis_RT : Analysis raw data for Bayesian MSM, RDF, RMSD, RMSF, H-bonds and Secondary structure changes at 300K 13_HTMD_MD_analysis_HT : Analysis raw data for Bayesian MSM, RDF, RMSD, RMSF, H-bonds and Secondary structure changes at 363.15K 14_H2O_RT : Radial Distribution Function (RDF) data for simulations in explicit water and in absence of the protein Cyt c <strong>Notes:</strong> Each folder contains INFO.md with further detailed information on respective types of data.
DOI: 10.5281/zenodo.7875771
title: FEP benchmark EG5 FEP+ fmp and trajectory files

description: Full FEP+ fmp file and related trajectory files for EG5 FEP+ calculations related to dataset https://github.com/MCompChem/fep-benchmark
DOI: 10.5281/zenodo.7875770
title: FEP benchmark EG5 FEP+ fmp and trajectory files

description: Full FEP+ fmp file and related trajectory files for EG5 FEP+ calculations related to dataset https://github.com/MCompChem/fep-benchmark
DOI: 10.5281/zenodo.7875806
title: desmognathus_folkertsi_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.7875805
title: desmognathus_folkertsi_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.7875720
title: DATASET: Temperature Differentially Influences the Capacity of Trichoderma Species to Induce Plant Defense Responses in Tomato Against Insect Pests

description: Species of the ecological opportunistic, avirulent fungus, <em>Trichoderma</em> are widely used in agriculture for their ability to protect crops from the attack of pathogenic fungi and for plant growth promotion activity. Recently, it has been shown that they may also have complementary properties that enhance plant defense barriers against insects. However, the use of these fungi is somewhat undermined by their variable level of biocontrol activity, which is influenced by environmental conditions. Understanding the source of this variability is essential for its profitable and wide use in plant protection. Here, we focus on the impact of temperature on <em>Trichoderma afroharzianum</em> T22, <em>Trichoderma atroviride</em> P1, and the defense response induced in tomato by insects. The <em>in vitro</em> development of these two strains was differentially influenced by temperature, and the observed pattern was consistent with temperature-dependent levels of resistance induced by them in tomato plants against the aphid, <em>Macrosiphum euphorbiae</em>, and the noctuid moth, <em>Spodoptera littoralis</em>. Tomato plants treated with <em>T. afroharzianum</em> T22 exhibited enhanced resistance toward both insect pests at 25°C, while <em>T. atroviride</em> P1 proved to be more effective at 20°C. The comparison of plant transcriptomic profiles generated by the two <em>Trichoderma</em> species allowed the identification of specific defense genes involved in the observed response, and a selected group was used to assess, by real-time quantitative reverse transcription PCR (qRT-PCR), the differential gene expression in <em>Trichoderma</em>-treated tomato plants subjected to the two temperature regimens that significantly affected fungal biological performance. These results will help pave the way toward a rational selection of the most suitable <em>Trichoderma</em> isolates for field applications, in order to best face the challenges imposed by local environmental conditions and by extreme climatic shifts due to global warming.
DOI: 10.5281/zenodo.7875721
title: DATASET: Temperature Differentially Influences the Capacity of Trichoderma Species to Induce Plant Defense Responses in Tomato Against Insect Pests

description: Species of the ecological opportunistic, avirulent fungus, <em>Trichoderma</em> are widely used in agriculture for their ability to protect crops from the attack of pathogenic fungi and for plant growth promotion activity. Recently, it has been shown that they may also have complementary properties that enhance plant defense barriers against insects. However, the use of these fungi is somewhat undermined by their variable level of biocontrol activity, which is influenced by environmental conditions. Understanding the source of this variability is essential for its profitable and wide use in plant protection. Here, we focus on the impact of temperature on <em>Trichoderma afroharzianum</em> T22, <em>Trichoderma atroviride</em> P1, and the defense response induced in tomato by insects. The <em>in vitro</em> development of these two strains was differentially influenced by temperature, and the observed pattern was consistent with temperature-dependent levels of resistance induced by them in tomato plants against the aphid, <em>Macrosiphum euphorbiae</em>, and the noctuid moth, <em>Spodoptera littoralis</em>. Tomato plants treated with <em>T. afroharzianum</em> T22 exhibited enhanced resistance toward both insect pests at 25°C, while <em>T. atroviride</em> P1 proved to be more effective at 20°C. The comparison of plant transcriptomic profiles generated by the two <em>Trichoderma</em> species allowed the identification of specific defense genes involved in the observed response, and a selected group was used to assess, by real-time quantitative reverse transcription PCR (qRT-PCR), the differential gene expression in <em>Trichoderma</em>-treated tomato plants subjected to the two temperature regimens that significantly affected fungal biological performance. These results will help pave the way toward a rational selection of the most suitable <em>Trichoderma</em> isolates for field applications, in order to best face the challenges imposed by local environmental conditions and by extreme climatic shifts due to global warming.
DOI: 10.17909/d4qh-wq06
title: NGC1835
DOI: 10.17632/ssx2hnx7dh.1
title: Knowledge, Attitude & Practice regarding obstructive sleep apnea among physical therapy practitioners

description: One of the most prevalent types of sleep disordered breathing (SDB) is obstructive sleep apnea (OSA), which is characterized by recurrent, brief episodes of upper airway obstructions during sleep. Physical therapy benefits the patient with fat redistribution, decreased nocturnal fluid resorption from the legs, increased pharyngeal muscle strength, and improved sleep quality. The purpose of this study was to assess the knowledge, attitude, and practise regarding obstructive sleep apnea among physical therapy practitioners. This was a cross-sectional survey study in which 384 physical therapy practitioners in the age range between 21 and 50, with a mean of 27.435.144, participated. The questionnaire was divided into four sections: the first for demographic data, the second for knowledge evaluation, the third for attitude assessment, and the fourth for practise assessment. The questionnaire was sent via a link distributed via social media applications, emails, and internet forums. The responses of each participant were gathered and analysed using SPSS. 384 physical therapy practitioners responded to the questionnaire. Out of 384 responses, the majority were female, 58.3% (224) and 41.7% (160) were male, and most of the practitioners were MPT qualified. 62.50% (240) have experience of 1–5 years, as do the majority of the physical therapy practitioners, 183 (47.70%). According to the study`s findings, only 47.1% (181) knew about OSA and 34.6% (133) were aware of its risk factors. When asked about oropharyngeal exercises, only 30.5% (117) were aware, whereas 28.1% (108) were doubtful and 41.4% (159) were not sure. When they questioned if hypoglossal nerve stimulators increased airflow, 28.6% (110) answered in favour, 27.1% (104) against, and 44.3% (170) could not decide. According to 49.7% (191) of respondents, obstructive sleep apnea is a significant medical issue,while the rest did not consider OSA a serious medical issue. When it comes to handling an OSA patient, 42.2% (162) were confident, compared to 27.6% (106) who were not, and 30.2% (116) were unsure if they could treat them. According to our findings, most practitioners (73.4%, 282) have patients with OSA, but only 31.8% (122) inquired about the condition and examined them. Only 14.8% (57) were aware of the electrical stimulation, and just 27.9% (107) were aware of the positional therapy. The limitation of the study is that responses may vary according to the mood and attention of participants, as the questionnaire was self-reported.This study’s findings showed that physical therapists are fairly aware of OSA, which causes patients to go unnoticed. So, we conclude that there is a need to increase awareness among PTs about various physiotherapeutic interventions for effective management and to incorporate changes and implement them in patients with OSA for better evaluation and patient care.Keywords: obstructive sleep apnea, apnea-hypopnea index, physiotherapeutic interventions.
DOI: 10.17632/cdsz2ddv3t.1
title: 10 Gene Microarray Datasets

description: 10 Microarray data sets studied in the paper `D. Chen, J, Jin, and Z.T. Ke (2023) Subject clustering by IF-PCA and several recent methods'. See `ReadMe.rtf' for details.
DOI: 10.17632/nv2x6kf5rd.1
title: 8 Single-Cell RNA-seq Datasets

description: 8 Single-Cell RNA-seq data sets studied in the paper `D. Chen, J, Jin, and Z.T. Ke (2023) Subject clustering by IF-PCA and several recent methods'. See `ReadMe.rtf' for details.
DOI: 10.17632/dpd6x6y969.1
title: Social Defeat Stress Induces Genome-Wide 5mC and 5hmC Alterations in the Mouse Brain

description: Detailed gene expression in each sample for genes in Fig. 3C, 3D, 4D, 4E, 5D and 5E.
DOI: 10.17632/z7ym63p42m.1
title: Sediment Organic matter, Nitrogen an Phosphorus content near Magdalena Bay fish farm

description: Superficial sediment content of organic matter, total nitrogen, and total phosphorus determined near a fish farm of yellowtail kingfish established on Magdalena Bay. The samples were taken in the summer of 2017 and 2021.
DOI: 10.35078/jojjta
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Diamantina | Município: Raposos

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.17632/wp8rnmg375.1
title: Normative refernce in school going children with different CV angle

description: A wide range of pain-related musculoskeletal diseases and postural dysfunctions could be brought on by carrying large backpacks and sitting incorrectly.Therefore, the purpose of this study is to find the normative reference value of craniovertebral angle among school going children through an observational study
DOI: 10.17632/c6psytg7p5.1
title: Impact of Prolonged wrist extension as the prevalent cause of wrist pain among Computer desktop workers : A survey study

description: The study focuses on determining the impact of prolonged wrist extension on wrist pain among computer desktop workers. It is observed that prolonged wrist extension may lead a person to develop wrist pain. Long-lasting wrist pain affects the daily working performance of the users by restricting their activities and ability to cope with the demanding workload. This study was a cross-sectional study. 302 computer desktop workers aged 18 to 60 years participated in an online survey. The study shows that about 85.09% of participants had wrist pain during typing. 12.9% of participants, felt wrist pain in their left hand, 30.4% of participants had pain in both hands and 56.6% of participants had wrist pain in their right hand. The study concluded that wrist pain was prevalent among computer desktop workers. The pain was felt, and symptoms were connected to a particular person and job-related characteristics. With no threshold effects, typing time indicated wrist pain at low exposure levels.
DOI: 10.17632/2pb6bkx75s.1
title: Impact of clinical postings on Emotional Intelligence of Physiotherapy students- An online survey study

description: Emotional Intelligence (EI) is the capacity to pay attention to one’s own and other people’s feelings and emotions, to recognise differences between them, and to utilise this knowledge to inform one's decisions and behaviour. For physiotherapist it is particularly important because they treat patients who have undergone a trauma which has affected them physically as well as psychologically. Therefore, the purpose of the study was to determine whether undergraduate students' emotional intelligence has increased, to evaluate if the Undergraduate students' social skills have improved following their interactions with patients, to assess the students' level of self-awareness and self-control.
DOI: 10.6084/m9.figshare.22194535.v2
title: FEEDS database

description: MEROPS database and DIAMOND builded file to use in the FEEDS tools.
DOI: 10.5281/zenodo.7872348
title: DIMOSIC TC data

description: This data contains<br> 1. outputs from the GFDL simple TC tracker for each DIMOSIC model.<br> 2. interpolated TC related precipitation data. exp_names for the 8 models:<br> IFS: ec_oper<br> IFS-47R3: hjdt<br> ICON: dwd3<br> SHiELD: gfdl2<br> CMC: cmc2<br> UM: ukmo<br> ARPEGE: meteofrance3<br> JMA: jma Please contact Jan-Huey.Chen@noaa.gov for any questions.
DOI: 10.5281/zenodo.7334385
title: How do developers use Code Snippets in README files? Analyzing between Python Software Development and Scientific Libraries

description: README files contain crucial information for clients to effectively use the software.<br> However, we sometimes found that developers either present insufficient content or leave the README files empty.<br> Recent works suggest that, in popular repositories, developers tend to present more code snippets in their README files.<br> In this study, we investigate how developers present code snippets in 10,784 README files of PyPI libraries in terms of (i) the types of code snippets and (ii) the sections where code snippets are presented.<br> Our results indicate the prevalence of types of code snippets in various sections across different types of libraries.
DOI: 10.5281/zenodo.7334384
title: How do developers use Code Snippets in README files? Analyzing between Python Software Development and Scientific Libraries

description: README files contain crucial information for clients to effectively use the software.<br> However, we sometimes found that developers either present insufficient content or leave the README files empty.<br> Recent works suggest that, in popular repositories, developers tend to present more code snippets in their README files.<br> In this study, we investigate how developers present code snippets in 10,784 README files of PyPI libraries in terms of (i) the types of code snippets and (ii) the sections where code snippets are presented.<br> Our results indicate the prevalence of types of code snippets in various sections across different types of libraries.
DOI: 10.7916/zy0r-2h75
title:  Human Cervix Spherical Indentation Data
DOI: 10.48510/fk2/t30nnt/nyvo8m
title: data.tab

description: Survey data in SAV format (can be opened and analysed using SPSS)
DOI: 10.48510/fk2/t30nnt/2tqfo0
title: data.csv

description: Survey data in CSV format
DOI: 10.48510/fk2/t30nnt/rwgbta
title: tech_info_eng.pdf

description: Technical information regarding survey
DOI: 10.48510/fk2/t30nnt
title: Memento Mori: End of Life, Death and Imagined Afterlife in the Contemporary Latvian Lifeworld 1/01/20 → 31/03/23 National Representative Survey

description: The National Representative Survey would measure some concepts of Death and Dying: First contact with death, Experiencing death and dying in the family, Perception of good/bad death, Ideas about afterlife, Death attitudes, Fear of death and dying, Attitudes towards suicide, euthanasia and death penalty, Preparing for death or not, activities to be performed and those activities performed as well as Demographic characteristics
DOI: 10.48510/fk2/t30nnt/x0iqqf
title: codebook.txt

description: Codebook describing the survey data
DOI: 10.5281/zenodo.7860495
title: Available plasmids used in year 1 of ASAP project 2 - Target Enablement.

description: Collated plasmids used for the ASAP project 2 drug discovery platform in year 1. Details of insert sequence and vector backbone included. These plasmids will be deposited into Addgene shortly. Plasmids will be accessible for use by all. Plasmids used in successful crystal screens to date are highlighted on the sheet. Up to date information on the progress made by the ASAP project 2 team can be found here: https://asapdiscovery.org/outputs/target-enabling-packages/ Research reported here was supported in part by NIAID of the National Institutes of Health under award number U19AI171399.The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health
description: Research reported here was supported in part by NIAID of the National Institutes of Health under award number U19AI171399. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health
DOI: 10.5281/zenodo.7860494
title: Available plasmids used in year 1 of ASAP project 2 - Target Enablement.

description: Collated plasmids used for the ASAP project 2 drug discovery platform in year 1. Details of insert sequence and vector backbone included. These plasmids will be deposited into Addgene shortly. Plasmids will be accessible for use by all. Plasmids used in successful crystal screens to date are highlighted on the sheet. Up to date information on the progress made by the ASAP project 2 team can be found here: https://asapdiscovery.org/outputs/target-enabling-packages/ Research reported here was supported in part by NIAID of the National Institutes of Health under award number U19AI171399.The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health
description: Research reported here was supported in part by NIAID of the National Institutes of Health under award number U19AI171399. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health
DOI: 10.35078/eajhzf
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Diamantina | Município: Ribeirão das Neves

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.5281/zenodo.7875869
title: desmognathus_imitator_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.7875868
title: desmognathus_imitator_zanfona_1.fasta.gz

description: .
DOI: 10.34740/kaggle/dsv/5549128
title: COVID Vaccination in World (updated daily)
DOI: 10.15139/s3/ded5nd
title: Sonoma County Vision Zero Action Plan (2022). Sonoma County, California

description: Vision Zero is a strategy to reduce all traffic fatalities and severe injuries to zero, while increasing safe, equitable, and healthy mobility for all. Vision Zero Plans help guide municipalities, counties, and other areas to address these strategies considering the local context.
DOI: 10.17894/ucph.c8675313-45c6-4a90-b4ab-c65abffd3f38
title: Fasta files used for mapping in Sherwood et al., Nature 2023