cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.2601987
title: Preparation of dephosphorylated HTT samples for cryoEM analysis 2019/03/20

description: <strong>Project: </strong>High resolution structural analysis of purified HTT samples

<strong>Experiment: </strong>Preparation of dephosphorylated HTT samples for cryoEM analysis

<strong>Date completed:­ </strong>2019/03/20

<strong>Rationale: </strong>We now have a good understanding of the global structure of HTT when in complex with HAP40 and our MALS and SAXS data suggest that apo HTT is likely self-associating and heterogenous in nature, despite high levels of purity. Dephosphorylating HTT from Sf9 cell production could alter its global structure sufficiently to allow high resolution structure determination by cryoEM.
description: Dr. Harding is the recipient of the Huntington's Disease Society of America Berman Topper Career Development Fellowship which funds and supports this research, in addition to generous funding from the CHDI Foundation and the Huntington Society of Canada. The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada through Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Ontario Ministry of Research, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome.
DOI: 10.25345/c5rw4t
title: MassIVE MSV000083611 - GNPS-Athaliana_WT_mutant_0-6h_negative mode
title: A thaliana WT and ST2a mutant dataset with time points 0-6h post wounding. Data was generated on a Thermo Q Exactive and C18 RP UPLC. Negative polarity acquisition on LC-MS/MS
DOI: 10.5281/zenodo.2601995
title: SS_20 STRAND_DISPL

description: Strand displacement. Single stranded overhang in invading strand, length = 20 bp. First three days of simulations.
DOI: 10.5281/zenodo.2601996
title: SS_20 STRAND_DISPL

description: Strand displacement. Single stranded overhang in invading strand, length = 20 bp. First three days of simulations.
DOI: 10.6073/pasta/05e071caddf53508c6f95db5dffbdd37
title: CSM01 Seasonal Summary of Numbers of Small Mammals on 14 LTER Traplines in Prairie Habitats at Konza Prairie (Reformatted to ecocomDP Design Pattern)

description: This data package is formatted according to the "ecocomDP", a data package design pattern for ecological community surveys, and data from studies of composition and biodiversity. For more information on the ecocomDP project see https://github.com/EDIorg/ecocomDP/tree/master, or contact EDI https://environmentaldatainitiative.org.

This Level 1 data package was derived from the Level 0 data package found here: https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-knz&identifier=88&revision=7

The abstract below was extracted from the Level 0 data package and is included for context:
DOI: 10.5517/ccdc.csd.cc1mnkmg
title: CCDC 1509316: Experimental Crystal Structure Determination

description: Related Article: James R. Pankhurst, Shyeni Paul, Yunqing Zhu, Charlotte K. Williams, Jason B. Love|2019|Dalton Trans.|48|4887|doi:10.1039/C9DT00595A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1yywtl
title: CCDC 1816191: Experimental Crystal Structure Determination

description: Related Article: Yan-Yan Zhang, Yin Wei, Min Shi|2019|Chem.Commun.|55|4210|doi:10.1039/C9CC00412B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zkk58
title: CCDC 1834120: Experimental Crystal Structure Determination

description: Related Article: Yang-Guo Xie, Rong Yan, Xianglong Zhong, Huang Piao, Ishaq Muhammad, Xisong Ke, Shikai Yan, Yuanqiang Guo, Hui-Zi Jin, Wei-Dong Zhang|2019|RSC Advances|9|9235|doi:10.1039/C9RA00347A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1znjz4
title: CCDC 1836997: Experimental Crystal Structure Determination

description: Related Article: Bing Fang, Manman Chu, Zhen Wu, Yan Shi, Yong Sheng Zhao, Meizhen Yin|2019|J.Mater.Chem.C|7|4434|doi:10.1039/C9TC00156E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q0bmp
title: CCDC 1579252: Experimental Crystal Structure Determination

description: Related Article: Joseph J. Gair, Yehao Qiu, Rahul L. Khade, Natalie H. Chan, Alexander S. Filatov, Yong Zhang, Jared C. Lewis|2019|Organometallics|38|1407|doi:10.1021/acs.organomet.8b00887
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1znk06
title: CCDC 1836998: Experimental Crystal Structure Determination

description: Related Article: Bing Fang, Manman Chu, Zhen Wu, Yan Shi, Yong Sheng Zhao, Meizhen Yin|2019|J.Mater.Chem.C|7|4434|doi:10.1039/C9TC00156E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1znk28
title: CCDC 1837000: Experimental Crystal Structure Determination

description: Related Article: Bing Fang, Manman Chu, Zhen Wu, Yan Shi, Yong Sheng Zhao, Meizhen Yin|2019|J.Mater.Chem.C|7|4434|doi:10.1039/C9TC00156E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zq5rm
title: CCDC 1838571: Experimental Crystal Structure Determination

description: Related Article: Yan-Yan Zhang, Yin Wei, Min Shi|2019|Chem.Commun.|55|4210|doi:10.1039/C9CC00412B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zrpxb
title: CCDC 1840033: Experimental Crystal Structure Determination

description: Related Article: Yang-Guo Xie, Rong Yan, Xianglong Zhong, Huang Piao, Ishaq Muhammad, Xisong Ke, Shikai Yan, Yuanqiang Guo, Hui-Zi Jin, Wei-Dong Zhang|2019|RSC Advances|9|9235|doi:10.1039/C9RA00347A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zt4db
title: CCDC 1841412: Experimental Crystal Structure Determination

description: Related Article: Yang-Guo Xie, Rong Yan, Xianglong Zhong, Huang Piao, Ishaq Muhammad, Xisong Ke, Shikai Yan, Yuanqiang Guo, Hui-Zi Jin, Wei-Dong Zhang|2019|RSC Advances|9|9235|doi:10.1039/C9RA00347A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zvvb0
title: CCDC 1843053: Experimental Crystal Structure Determination

description: Related Article: Joseph J. Gair, Yehao Qiu, Rahul L. Khade, Natalie H. Chan, Alexander S. Filatov, Yong Zhang, Jared C. Lewis|2019|Organometallics|38|1407|doi:10.1021/acs.organomet.8b00887
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zvvc1
title: CCDC 1843054: Experimental Crystal Structure Determination

description: Related Article: Joseph J. Gair, Yehao Qiu, Rahul L. Khade, Natalie H. Chan, Alexander S. Filatov, Yong Zhang, Jared C. Lewis|2019|Organometallics|38|1407|doi:10.1021/acs.organomet.8b00887
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zzdw7
title: CCDC 1846480: Experimental Crystal Structure Determination

description: Related Article: Yan-Yan Zhang, Yin Wei, Min Shi|2019|Chem.Commun.|55|4210|doi:10.1039/C9CC00412B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.2600407
title: DS_15 INITIAL_CONFIG

description: Initial configuration. Double stranded overhang in invading strand, length = 15 bp
DOI: 10.5281/zenodo.2600408
title: DS_15 INITIAL_CONFIG

description: Initial configuration. Double stranded overhang in invading strand, length = 15 bp
DOI: 10.5517/ccdc.csd.cc2044lx
title: CCDC 1851028: Experimental Crystal Structure Determination

description: Related Article: Yan-Yan Zhang, Yin Wei, Min Shi|2019|Chem.Commun.|55|4210|doi:10.1039/C9CC00412B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25345/c5n627
title: MassIVE MSV000083612 - GNPS-Athaliana_WT_mutant_0-6h_positive mode
title: A thaliana WT and ST2a mutant dataset with time points 0-6h post wounding. Data was generated on a Thermo Q Exactive and C18 RP UPLC. Positive polarity acquisition on LC-MS/MS
DOI: 10.25910/5c941d0c8bccb
title: Ladybird Cobbitty 2017 Brassica Dataset

description: This data set contains weekly scans of cauliflower and broccoli covering a ten week growth cycle from transplant to harvest. The data set includes ground-truth, physical characteristics of the crop; environmental data collected by a weather station and a soil-senor network; and scans of the crop performed by an autonomous agricultural robot, which include stereo colour, thermal and hyperspectral imagery. The crop were planted at Lansdowne Farm, a University of Sydney agricultural research and teaching facility. Lansdowne Farm is located in Cobbitty, a suburb 70km south-west of Sydney in New South Wales (NSW), Australia. Four 80 metre raised crop beds were prepared with a North-South orientation. Approximately 144 Brassica were planted in each bed. Cauliflower were planted in the first and third bed (from west to east). Broccoli were planted in the second and fourth beds.
DOI: 10.5063/f17m0660
title: A Closed-Loop Simulation Model For In-season Management of Kuskokwim River Chinook Salmon, Tailored for a Value of Information Analysis and informed by Data Spanning 1984-2016

description: In-season harvest management in large-scale subsistence fisheries for Pacific salmon is often conducted in the face of poor information (both quality and quantity). Before deciding which information sources to invest in generating or improving, it is prudent to first evaluate which will provide the greatest gains in management performance, and in which cases. We created a closed-loop simulation model to evaluate the Value of Information of various data sources for decision-making regarding in-season harvest management in the Kuskokwim River, Alaska. The information sources we evaluated were (1) improved pre-season forecasts of run size, (2) in-season abundance index data, and (3) in-season harvest estimates. The model contains submodels for the true system dynamics (i.e., the spatiotemporal aspects of the fish and fishers), observed dynamics (i.e., assessment), and management based on assessment information (i.e., weekly decisions about how much fishing to allow). The software package included here includes all model code to specify and run the analysis, as well as all data used to parameterize the model (biological information like run timing, species composition, telemetry data and sociological information like the number of fishing households in each village and the amount of harvest by species taken by each village). The file InSeason_VOI_Model.zip is a zipped directory including all of the code and data. The data used to parameterize the model is also included separately as individual files to more clearly describe their contents. These data were originally sourced from Alaska Department of Fish and Game reports (see methods section for details).
DOI: 10.5281/zenodo.2600462
title: DS_20 INITIAL_CONFIG

description: Initial Configuration. Double Stranded overhang in invading strand, length = 20.
DOI: 10.5281/zenodo.2600463
title: DS_20 INITIAL_CONFIG

description: Initial Configuration. Double Stranded overhang in invading strand, length = 20.
DOI: 10.18739/a2sb3wz25
title: Melt layer data from Mt. Hunter, Denali National Park, Alaska, 2013
DOI: 10.5281/zenodo.2600469
title: DS_25 INITIAL_CONFIG

description: Initial Configuration. Double Stranded overhang in invading strand, length = 25
DOI: 10.5281/zenodo.2600470
title: DS_25 INITIAL_CONFIG

description: Initial Configuration. Double Stranded overhang in invading strand, length = 25
DOI: 10.5281/zenodo.2600478
title: DS_30 INITIAL_CONFIG

description: Initial configuration. Double stranded overhang in invading strand, length = 30
DOI: 10.5281/zenodo.2600479
title: DS_30 INITIAL_CONFIG

description: Initial configuration. Double stranded overhang in invading strand, length = 30
DOI: 10.25919/5c93cd99bea35
title: Parkes observations for project P995 semester 2018OCTS_21

description: We propose to perform observations of the very young pulsar PSR B0540–69 in the Large Magellanic Cloud to detect pulsed flux from this traditionally radio-quiet source.  We are motivated to do so due to a relatively recent X-ray observation of a 36% change in its spin down rate, thought to be due to a state change in its magnetospheric processes.  There is reason to believe this may be accompanied by an increase in pulsed flux, as has been seen in intermittent pulsar behaviour, for example.  Additionally, PSR B0540–69 is known to emit giant pulses, one of only a small number of pulsars to do so.  With the new Ultra Wideband Low-frequency (UWL) receiver system, we will be able to conduct the highest sensitivity observations of this source yet achieved at radio wavelengths.  A successful detection of pulsed flux will provide important insight into the magnetospheric evolution and behaviour in this pulsar, and a better understanding of how its glitch behaviour may influence its emission.  Even without such a detection, we will be able to study the giant pulse behaviour of PSR B0540–69 with unprecedented sensitivity.
DOI: 10.5063/f1057d6g
title: Alaska Board of Fisheries Meetings

description: The Alaska Board of Fisheries (BOF) provides a local forum for regional opinions on fish and game issues, facilitates resource allocation, and makes regulatory changes. The BOF holds a variety of meetings each year. This dataset includes information about the dates, locations, and meeting descriptions for BOF meetings that occurred or are slated to occur between 2000 and 2019. The original source of these data is the Alaska Department of Fish and Game. Original data dating back to 2003 were extracted from here: http://www.adfg.alaska.gov/index.cfm?adfg=fisheriesboard.meetinginfo. Glenn Haight, BOF Executive Director, provided information about meetings from years prior to 2003. This dataset was modified by separating the start and end dates from the original "Dates" column into two separate columns.
DOI: 10.5063/f13t9fh5
title: Age demographics of salmon permit holders in the Alaskan Commercial Fisheries Entry Commission, 1976-2016

description: The Commercial Fisheries Entry Commision (CFEC) is an independent, autonomous agency of the State of Alaska which regulates entry into Alaska's commercial fisheries. The CFEC is responsible for leasing all commercial fishing permits including permits for limited-entry fisheries. Limited-entry fisheries include all state salmon fisheries, most herring fisheries, and various other fisheries. This dataset includes age demographics, broken out into decades, of all Alaska resident permanent salmon permit holders between 1975 and 2016. The source of this permit information is permit application and renewal forms collected by CFEC. This dataset tabulates individuals by community and unduplicated by person, meaning that if an individual holds more than one permit, they are only represented once. Also included in this dataset is a script which leverages census designated place data to assign latitude and longitude values to each community.
DOI: 10.5281/zenodo.2600484
title: DS_35 INITIAL_CONFIG

description: Initial configuration. Double stranded overhang in invading strand, length = 35 bp
DOI: 10.5281/zenodo.2600485
title: DS_35 INITIAL_CONFIG

description: Initial configuration. Double stranded overhang in invading strand, length = 35 bp
DOI: 10.5063/f1g44nk5
title: Alaska Federal Subsistence Board Proposals 2000-2015

description: The Federal Subsistence Board (FSB) is the decision-making body that oversees the Federal Subsistence Management Program. Board members include the regional directors of the U.S. Fish and Wildlife Service, National Park Service, Bureau of Land Management, Bureau of Indian Affairs, the U.S. Forest Service, in addition to three public members appointed by the Secretaries of the Interior and Agriculture. Two of these public members represent rural subsistence users and one is the Federal Subsistence Board chairman. The Federal Subsistence Board has been delegated the authority to manage fish and wildlife for subsistence uses on federal public lands and waters in Alaska. Subsistence users can submit proposals to change existing Federal subsistence regulations for the taking of fish and shellfish on Federal public lands in Alaska. The board incorporates input from Regional Advisory Councils (RACs), the Office of Subsistence Management (OSM), the Alaska Department of Fish and Game (ADFG), and public comments, into the decision of whether to carry or fail a proposal. Once the Board makes its decisions, it will publish the changes as final regulations for that cycle of regulatory years and distribute the regulation book throughout Alaska. This dataset summarizes proposal information taken from proposal results logs, FSB meeting books, and meeting transcripts. Data are presented in tabular format for easier digestion of some basic aspects of the proposals (who proposed it, a short description, whether it passed, who supported it, what region/species are affected, etc.) More details on the coding process are found in the included text document.
DOI: 10.5063/f1kw5db1
title: Alaska commercial salmon fishery ex-vessel prices, 1984-2015

description: Ex-vessel prices are post-season adjusted price per pound for the first purchase of a commercial harvest. Ex-vessel values are weighted average estimates based on best available data for administrative area, and applied to the administrative area as a whole. Here, ex-vessel prices for all five species of salmon (pink, sockeye, chinook, chum, and coho) are included, spanning from 1984 to 2015. Data are included from all of Alaska and are presented annually by region, including the following regions: Alaska Peninsula, Bristol Bay, Chignik, Cook Inlet, Kodiak, Kotzebue, Kuskokwim, Norton Sound, Prince William Sound, Southeast, and Yukon. The Prince William Sound administrative area includes Copper River.
DOI: 10.5063/f1qn652r
title: Alaska Board of Fisheries Proposals 1959-2016

description: Every three years, the Alaska Board of Fish (Board) calls for regional fisheries management proposals, inviting the public to directly participate in fisheries governance. Anyone can submit a proposal and provide written or oral testimony on any of the proposals, which constitute potential regulatory changes and are accessible in an online proposal book. Proposals are logged by Board staff and recorded in the meeting documents, which are stored online and archived at the State, Library, Archives, and Museum (SLAM) in Juneau. Each proposal contains valuable information about stakeholder demographics, affiliations, interests, and positions on allocation disputes. Alaska's inclusion of stakeholders in its decision-making process began in 1959, decades before researchers, managers, and politicians began advocating for increased stakeholder involvement in fisheries management. Stakeholder participation is now lauded as a key component to successful fisheries management, but little data exists that characterizes and assesses this participation. Using integrated data digitization and coding methods, this database quantifies stakeholder participation in Alaska's fisheries management. This dataset includes a tabular data representation of all Board of Fisheries proposals from 1959-2016 (BOF_Proposals.csv). Proposal materials consisted of scanned pdfs of board generated documents, including proposal books, vote logs, and meeting minutes. The included coding document (BOF_Proposal_Coding.pdf) outlines how to translate the diverse array of information in these documents into a regular tabular structure. Quality control of these data is ongoing, and a number of known issues in the tabular data remain. See methods for more information.