cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12263033
title: New and advanced features of fetal intelligent navigation echocardiography (FINE) or 5D heart

description: Congenital heart disease (CHD) is the leading organ-specific birth defect, as well as the leading cause of infant morbidity and mortality from congenital malformations. Therefore, a comprehensive screening examination of the fetal heart should be performed in all women to maximize the detection of CHD. Four-dimensional sonography with spatiotemporal image correlation (STIC) technology displays a cine loop of a complete single cardiac cycle in motion. A novel method known as Fetal Intelligent Navigation Echocardiography (or FINE) was previously developed to interrogate STIC volume datasets using “intelligent navigation” technology. Such method allows the automatic display of nine standard fetal echocardiography views required to diagnose most cardiac defects. FINE considerably simplifies fetal cardiac examinations and reduces operator dependency. It has both high sensitivity and specificity for the detection of CHD. Indeed, FINE has been integrated into several commercially available ultrasound platforms. Recently, eight novel and advanced features have been developed for the FINE method and they will be described herein. Such features can be categorized based upon their broad goals. The first goal is to simplify FINE further, and consists of the following features: (1) <i>Auto fetal positioning</i> (or <i>FINE align</i>); (2) <i>Skip points</i>; (3) <i>Predictive cursor</i>; (4) <i>Static mode</i> volume; and (5) <i>Breech sweep.</i> The second goal is to allow quantitative measurements to be performed on the cardiac views generated by FINE: (6) <i>Automatic cardiac axis;</i> and (7) <i>Cardiac biometry.</i> Finally, the last goal is to improve the success of obtaining fetal echocardiography view(s); and consists of (8) <i>Maestro planar navigation</i>.
DOI: 10.6084/m9.figshare.24321764
title: The oldest fossil record of <i>Bauhinia</i> s.s. (Fabaceae) from the Tibetan Plateau sheds light on its evolutionary and biogeographic implications

description: <i>Bauhinia</i> s.s. is a large genus in the family Fabaceae, but its evolutionary and biogeographical history is still unclear due to the scarcity of fossil records compared to the highly diverse modern species in pantropic regions. Here, we report the earliest fossil record of <i>Bauhinia</i> s.s., namely <i>Bauhinia tibetensis</i> Y. Gao et T. Su sp. nov., based on leaves from the latest Paleocene of the southern Tibetan region. Combined with palaeoecological niche simulations and ancestral state reconstruction, the new fossils suggested a Paleocene origin of <i>Bauhinia</i> s.s. in the Afrotropical realm that subsequently dispersed to the Neotropical and Indomalayan realms. <i>Bauhinia tibetensis</i> belongs to the Asian clade of <i>Bauhinia</i> s.s. that reached the southern Tibetan region from the Afrotropical realm via the Kohistan-Ladakh Island Arc in the early Paleocene. This clade spread to south-eastern China during the Oligocene and entered northern India during the Neogene or earlier. The discovery of the oldest <i>Bauhinia</i> s.s. from what is now the southern Tibetan Plateau updates our understanding of the biogeographical history of this genus and demonstrates that the Kohistan-Ladakh Island Arc is an ancient corridor for floristic interchange between Africa and India.
DOI: 10.6084/m9.figshare.24321764.v1
title: The oldest fossil record of <i>Bauhinia</i> s.s. (Fabaceae) from the Tibetan Plateau sheds light on its evolutionary and biogeographic implications

description: <i>Bauhinia</i> s.s. is a large genus in the family Fabaceae, but its evolutionary and biogeographical history is still unclear due to the scarcity of fossil records compared to the highly diverse modern species in pantropic regions. Here, we report the earliest fossil record of <i>Bauhinia</i> s.s., namely <i>Bauhinia tibetensis</i> Y. Gao et T. Su sp. nov., based on leaves from the latest Paleocene of the southern Tibetan region. Combined with palaeoecological niche simulations and ancestral state reconstruction, the new fossils suggested a Paleocene origin of <i>Bauhinia</i> s.s. in the Afrotropical realm that subsequently dispersed to the Neotropical and Indomalayan realms. <i>Bauhinia tibetensis</i> belongs to the Asian clade of <i>Bauhinia</i> s.s. that reached the southern Tibetan region from the Afrotropical realm via the Kohistan-Ladakh Island Arc in the early Paleocene. This clade spread to south-eastern China during the Oligocene and entered northern India during the Neogene or earlier. The discovery of the oldest <i>Bauhinia</i> s.s. from what is now the southern Tibetan Plateau updates our understanding of the biogeographical history of this genus and demonstrates that the Kohistan-Ladakh Island Arc is an ancient corridor for floristic interchange between Africa and India.
DOI: 10.6084/m9.figshare.19589109.v1
title: Additional file 1 of Genome-wide expression analysis of carboxylesterase (CXE) gene family implies GBCXE49 functional responding to alkaline stress in cotton

description: Additional file 1: Figure S1. Distribution of CXE genes in four cotton species. Figure S2. A breakdown of the number of CXE genes among species. Table S1. Attached table of physical and chemical properties. Table S2. Primer sequence. Table S3. Tandem repeats and fragment repeats in four cotton species. Table S4. Gene pairs of ten combinatorial. Table S5. Prediction of duplicated gene pairs involved in different combinations from four Gossypium species. Table S6. Statistics of promoter cis-element. Table S7. AlkVSCK_Gene_differential_expression. Table S8. SalVSCK_Gene_differential_expression.
DOI: 10.6084/m9.figshare.19581798.v1
title: Additional file 3 of Gut microbiome signatures linked to HIV-1 reservoir size and viremia control

description: Additional file 2: Dataset S1. Longitudinal microbial composition (relative abundance) in viremic controllers and non-controllers analyzed by MetaPhlAn2.0. Dataset S2. Raw bacterial protein counts at baseline in viremic controllers and non-controllers analysed using Scaffold Q+ software v4.9.0. Dataset S3. Raw gene counts at baseline in viremic controllers and non-controllers estimated using RSEM v1.3.0. Dataset S4. Soluble factors (normalized protein expression units) from the Olink inflammation panel at baseline in viremic controllers and non-controllers. Dataset S5. List of transcripts significantly correlated with the Bacteroidales:Clostridiales ratio adjusted for multiple comparisons (spearman’s rho and corresponding q-value&lt;0.05 are reported). Dataset S6. Spearman’s correlation (rho=0.5) between viral reservoir (CA HIV-1 RNA and HIV-1 DNA), bacterial species (Bacteroidales and Clostrdiales), transcripts correlated with the ratio Bacteroidales / Clostridiales and differentially abundant microbial proteins (p&lt;0.025). Dataset S7. Benjamini–Hochberg multiple hypothesis correction for unadjusted p-values ≤ 0.05 (metagenomics and metaproteomics datasets).
DOI: 10.6084/m9.figshare.16960373
title: Additional file 3 of Trait correlated expression combined with eQTL and ASE analyses identified novel candidate genes affecting intramuscular fat

description: Additional file 3: Supplementary Table S3. The result of Gene set enrichment analysis (GSEA) analysis for all the 13, 450 expressed genes
DOI: 10.6084/m9.figshare.7006493
title: Additional file 6: of Correction to: Genome-wide discovery and characterization of maize long non-coding RNAs

description: Table S2. eQTL mapping of HC-lncRNA expressed in more than 80% of the RILs. a Chromosome position of e-traits. b Genetic position of e-traits. c The physical chromosomal location on the B73 reference genome (AGPv2) of e-traits. d The middle physical position (equals the sum of the position of the transcription start site and the termination site divided by 2) of e-traits. e The genetic position of the peak of the eQTL. f The genetic position of the inferior support interval left Li et al. Genome Biology 2014, 15:R40 Page 12 of 15 http://genomebiology.com/2014/15/2/R40 bound of the eQTL. g The genetic position of the inferior support interval right bound of the eQTL. h The physical position of the peak of the eQTL on the B73 reference genome (AGPv2). i The logarithm of odds (LOD) score of the eQTL. j The additive effect - the positive value indicates that the allele from B73 increases the phenotypic value. k The amount of expression variation of the e-trait explained by the eQTL. Type shows the relationship between e-traits and the eQTLs. (XLS 143 kb)
DOI: 10.6084/m9.figshare.7006505.v1
title: Additional file 7: of Correction to: Genome-wide discovery and characterization of maize long non-coding RNAs

description: Table S3. eQTL mapping of HC-lncRNA expressed in more than 40% but less than 80% of the RILs. a Chromosome position of e-traits. b Genetic position of e-traits. c The physical chromosomal location on the B73 reference genome (AGPv2) of e-traits. d The middle physical position (equals the sum of the position of the transcription start site and the termination site divided by 2) of e-traits. e The genetic position of the peak of the eQTL. f The genetic position of the inferior support interval left bound of the eQTL. g The genetic position of the inferior support interval right bound of the eQTL. h The physical position of the peak of the eQTL on the B73 reference genome (AGPv2). i The logarithm of odds (LOD) score of the eQTL. j The additive effect - the positive value indicates that the allele from B73 increases the phenotypic value. k The amount of expression variation of the e-trait explained by the eQTL. Type shows the relationship between e-traits and the eQTLs. (XLS 143 kb)
DOI: 10.25402/fon.19589431
title: Supplementary Tables – Clinical and Genetic Predictions of Early-onset Cardiac Toxicity in Adjuvant Chemotherapy for Breast Cancer

description:       
<strong>Supplementary   table 1</strong>. Clinical and Genetic Predictions of Early-onset Cardiac Toxicity   in Adjuvant Chemotherapy for Breast Cancer
<em>Chemotherapy treatment</em>
<strong>Supplementary   table 2</strong>. Clinical and Genetic Predictions of Early-onset Cardiac Toxicity   in Adjuvant Chemotherapy for Breast Cancer
<em>Univariate   analysis of risk factors of reduction of overall cardiac toxicity</em>
<strong>Supplementary   table 3</strong>. Clinical and Genetic   Predictions of Early-onset Cardiac Toxicity in Adjuvant Chemotherapy for   Breast Cancer
<em>Multivariate   analysis of clinical risk factors alone for cardiac toxicity</em>
DOI: 10.6084/m9.figshare.7020725
title: MOESM1 of Tumor-associated macrophages derived CCL18 promotes metastasis in squamous cell carcinoma of the head and neck

description: Additional file 1.Â  Differentially expressed genes (DEGs) of Tu686 cells stimulated by rhCCL18
DOI: 10.6084/m9.figshare.7020752.v1
title: MOESM3 of Tumor-associated macrophages derived CCL18 promotes metastasis in squamous cell carcinoma of the head and neck

description: Additional file 3.Â  KEGG pathway enrichment analysis for the DEGs
DOI: 10.6084/m9.figshare.7020758.v1
title: Additional file 1: of MiR-320 regulates cardiomyocyte apoptosis induced by ischemiaâ reperfusion injury by targeting AKIP1

description: Results of miRNA microarray. (XLSX 21 kb)
DOI: 10.25402/fon.19589431.v1
title: Supplementary Tables – Clinical and Genetic Predictions of Early-onset Cardiac Toxicity in Adjuvant Chemotherapy for Breast Cancer

description:       
<strong>Supplementary   table 1</strong>. Clinical and Genetic Predictions of Early-onset Cardiac Toxicity   in Adjuvant Chemotherapy for Breast Cancer
<em>Chemotherapy treatment</em>
<strong>Supplementary   table 2</strong>. Clinical and Genetic Predictions of Early-onset Cardiac Toxicity   in Adjuvant Chemotherapy for Breast Cancer
<em>Univariate   analysis of risk factors of reduction of overall cardiac toxicity</em>
<strong>Supplementary   table 3</strong>. Clinical and Genetic   Predictions of Early-onset Cardiac Toxicity in Adjuvant Chemotherapy for   Breast Cancer
<em>Multivariate   analysis of clinical risk factors alone for cardiac toxicity</em>
DOI: 10.6084/m9.figshare.7006559
title: Additional file 2: of The inconsistent regulation of HOXC13 on different keratins and the regulation mechanism on HOXC13 in cashmere goat (Capra hircus)

description: Gene ontology enrichment result of differentially expressed genes between anagen and telogen. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.7006550
title: Additional file 10: of Long non-coding RNAs potentially function synergistically in the cellular reprogramming of SCNT embryos

description: Genes in salmon modules by WGCNA. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.7020923.v1
title: Additional file 2: of Genome wide transcriptome analysis provides bases on colonic mucosal immune system development affected by colostrum feeding strategies in neonatal calves

description: Sample information details and sequencing results mapped to reference genome by Tophat2. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7020935
title: Additional file 3: of Genome wide transcriptome analysis provides bases on colonic mucosal immune system development affected by colostrum feeding strategies in neonatal calves

description: List of core genes in the colon. (XLSX 785 kb)
DOI: 10.6084/m9.figshare.7020935.v1
title: Additional file 3: of Genome wide transcriptome analysis provides bases on colonic mucosal immune system development affected by colostrum feeding strategies in neonatal calves

description: List of core genes in the colon. (XLSX 785 kb)
DOI: 10.6084/m9.figshare.7006544.v1
title: Additional file 1: of The inconsistent regulation of HOXC13 on different keratins and the regulation mechanism on HOXC13 in cashmere goat (Capra hircus)

description: The sequences of primers and oligonucleotides. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7006544
title: Additional file 1: of The inconsistent regulation of HOXC13 on different keratins and the regulation mechanism on HOXC13 in cashmere goat (Capra hircus)

description: The sequences of primers and oligonucleotides. (XLSX 11 kb)
DOI: 10.25402/fon.19589497
title: Supplementary Tables – Long-term safety and efficacy of bisphosphonate therapy in advanced lung cancer with bone metastasis

description:       
<strong>Supplementary Table   1</strong> - Safety and efficacy of bisphosphonate therapy
Characteristics of   patients in the PSM dataset. AE-free   survivals of patients with two BP treatment patterns in different subtypes.   The comparison was performed by the log-rank test. OS, overall survival; BP,   bisphosphonate; AE, adverse event.
<strong>Supplementary   Table 2 -</strong> Safety and efficacy of   bisphosphonate therapy
Characteristics of   patients between regular and irregular BP treatment groups. The Kaplan-Meier curves for SRE-free   survivals of patients with regular and irregular therapy modes stratified by   different OS and infusion times. Statistical analysis was performed using the   log-rank test. OS, overall survival; BP, bisphosphonate; SRE,   skeletal-related event.
DOI: 10.25402/fon.19589497.v1
title: Supplementary Tables – Long-term safety and efficacy of bisphosphonate therapy in advanced lung cancer with bone metastasis

description:       
<strong>Supplementary Table   1</strong> - Safety and efficacy of bisphosphonate therapy
Characteristics of   patients in the PSM dataset. AE-free   survivals of patients with two BP treatment patterns in different subtypes.   The comparison was performed by the log-rank test. OS, overall survival; BP,   bisphosphonate; AE, adverse event.
<strong>Supplementary   Table 2 -</strong> Safety and efficacy of   bisphosphonate therapy
Characteristics of   patients between regular and irregular BP treatment groups. The Kaplan-Meier curves for SRE-free   survivals of patients with regular and irregular therapy modes stratified by   different OS and infusion times. Statistical analysis was performed using the   log-rank test. OS, overall survival; BP, bisphosphonate; SRE,   skeletal-related event.
DOI: 10.60893/figshare.jap.25036835
title: Nonreciprocity in Cavity Magnonics at Millikelvin Temperature (Supplementary)

description: The supplementary materials include detailed procedures
for fitting parameter extractions, and a comparison between cavity magnonic isolators and conventional ferrite-loaded Y- junction isolators.
DOI: 10.60893/figshare.jap.25036835.v1
title: Nonreciprocity in Cavity Magnonics at Millikelvin Temperature (Supplementary)

description: The supplementary materials include detailed procedures
for fitting parameter extractions, and a comparison between cavity magnonic isolators and conventional ferrite-loaded Y- junction isolators.
DOI: 10.25403/upresearchdata.25093274
title: Exploring early childhood teacher's perceptions and pedagogical practices of gender identity

description: The purpose of this research was to challenge teachers’ perceptions and pedagogical practices regarding children’s gender identity in Early Childhood Development centres. It was imperative to gain insight into how teachers’ perceptions and pedagogical practices influenced gender identities to understand how to challenge teachers’ perceptions of gender. As part of the research design, the interpretive paradigm, the qualitative research approach, and the case study methods were utilised. The qualitative research approach was most appropriate for the present study because it allowed the use of different methods and a wide range of designs. The data was collected and analysed through semi-structured interviews, non-participant observations and workshops. The four phases of data collection were as follows:
Phase 1: Observation
Phase 2: Interviews with teachers
Phase 3: Workshops with teachers and focus group discussions (PAR)
Phase 4: Workshops with teachers and focus group discussions
The data was collected and analysed within the interpretive paradigm and the methods were used to ensure trustworthiness, ethical considerations and the limitations of the research were explored. The research aimed to challenge teacher perceptions and pedagogical practices about gender identity. To do this, the research methodology assisted with making sense of the data by:
a) Eliciting the experiences of teachers’ perceptions and pedagogical practices about gender identity.
b) Enabling the analysis of the data in determining whether teachers’ perceptions and pedagogical practices influence gender identity and, if so, how perception and pedagogical practices influence gender.
c) Determining whether challenging teachers’ perceptions and pedagogical practices influence gender identity
d) Probing teachers on whether there is a visible difference in children’s identity when perceptions and pedagogical practices are challenged.
DOI: 10.6084/m9.figshare.7006550.v1
title: Additional file 10: of Long non-coding RNAs potentially function synergistically in the cellular reprogramming of SCNT embryos

description: Genes in salmon modules by WGCNA. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.7006559.v1
title: Additional file 2: of The inconsistent regulation of HOXC13 on different keratins and the regulation mechanism on HOXC13 in cashmere goat (Capra hircus)

description: Gene ontology enrichment result of differentially expressed genes between anagen and telogen. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.7006616.v1
title: Additional file 4: of Long non-coding RNAs potentially function synergistically in the cellular reprogramming of SCNT embryos

description: DE lncRNAs with significant difference compared 4-cell with 2-cell of NTM group. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.7006631
title: Additional file 9: of Long non-coding RNAs potentially function synergistically in the cellular reprogramming of SCNT embryos

description: Genes in red modules by WGCNA. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.7006493.v1
title: Additional file 6: of Correction to: Genome-wide discovery and characterization of maize long non-coding RNAs

description: Table S2. eQTL mapping of HC-lncRNA expressed in more than 80% of the RILs. a Chromosome position of e-traits. b Genetic position of e-traits. c The physical chromosomal location on the B73 reference genome (AGPv2) of e-traits. d The middle physical position (equals the sum of the position of the transcription start site and the termination site divided by 2) of e-traits. e The genetic position of the peak of the eQTL. f The genetic position of the inferior support interval left Li et al. Genome Biology 2014, 15:R40 Page 12 of 15 http://genomebiology.com/2014/15/2/R40 bound of the eQTL. g The genetic position of the inferior support interval right bound of the eQTL. h The physical position of the peak of the eQTL on the B73 reference genome (AGPv2). i The logarithm of odds (LOD) score of the eQTL. j The additive effect - the positive value indicates that the allele from B73 increases the phenotypic value. k The amount of expression variation of the e-trait explained by the eQTL. Type shows the relationship between e-traits and the eQTLs. (XLS 143 kb)
DOI: 10.6084/m9.figshare.7006613
title: Additional file 3: of Long non-coding RNAs potentially function synergistically in the cellular reprogramming of SCNT embryos

description: DE lncRNAs with significant difference compared 4-cell with 2-cell of in vivo embryos. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.7006619.v1
title: Additional file 5: of Long non-coding RNAs potentially function synergistically in the cellular reprogramming of SCNT embryos

description: DE lncRNAs with significant difference compared 2-cell with 1-cell of NTC group. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.7006613.v1
title: Additional file 3: of Long non-coding RNAs potentially function synergistically in the cellular reprogramming of SCNT embryos

description: DE lncRNAs with significant difference compared 4-cell with 2-cell of in vivo embryos. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.7006505
title: Additional file 7: of Correction to: Genome-wide discovery and characterization of maize long non-coding RNAs

description: Table S3. eQTL mapping of HC-lncRNA expressed in more than 40% but less than 80% of the RILs. a Chromosome position of e-traits. b Genetic position of e-traits. c The physical chromosomal location on the B73 reference genome (AGPv2) of e-traits. d The middle physical position (equals the sum of the position of the transcription start site and the termination site divided by 2) of e-traits. e The genetic position of the peak of the eQTL. f The genetic position of the inferior support interval left bound of the eQTL. g The genetic position of the inferior support interval right bound of the eQTL. h The physical position of the peak of the eQTL on the B73 reference genome (AGPv2). i The logarithm of odds (LOD) score of the eQTL. j The additive effect - the positive value indicates that the allele from B73 increases the phenotypic value. k The amount of expression variation of the e-trait explained by the eQTL. Type shows the relationship between e-traits and the eQTLs. (XLS 143 kb)
DOI: 10.6084/m9.figshare.7006628.v1
title: Additional file 8: of Long non-coding RNAs potentially function synergistically in the cellular reprogramming of SCNT embryos

description: DE lncRNAs with significant difference compared 4-cell of NTM with 4-cell of in vivo embryos. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.7006619
title: Additional file 5: of Long non-coding RNAs potentially function synergistically in the cellular reprogramming of SCNT embryos

description: DE lncRNAs with significant difference compared 2-cell with 1-cell of NTC group. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.7006631.v1
title: Additional file 9: of Long non-coding RNAs potentially function synergistically in the cellular reprogramming of SCNT embryos

description: Genes in red modules by WGCNA. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.7006625
title: Additional file 7: of Long non-coding RNAs potentially function synergistically in the cellular reprogramming of SCNT embryos

description: DE lncRNAs with significant difference compared 4-cell of NTC with 4-cell of in vivo embryos. (XLSX 14 kb)