cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11993574
title: Supplementary Material for: Impact of Vascular Endothelial Growth Factor Gene Polymorphisms and Their Interactions with Environmental Factors on Susceptibility to Renal Cell Carcinoma

description: <b><i>Aims:</i></b> This study aimed to investigate the association of single nucleotide polymorphisms (SNPs) within vascular endothelial growth factor (<i>VEGF</i>) gene and additional gene-environment interaction with renal cell carcinoma (RCC) risk. <b><i>Methods:</i></b> PCR-restriction fragment length polymorphism was performed to detect SNPs. Hardy-Weinberg equilibrium and allele frequencies in cases and controls were calculated using SNPStats (http://bioinfo.iconcologia.net/SNPstats). Generalized multifactor dimensionality reduction (GMDR) was used to screen the best interaction combination among 4 SNPs, smoking, and alcohol drinking. Logistic regression was performed to investigate the association between 4 SNPs within <i>VEGF</i> gene, additional gene-smoking interaction, and RCC risk. <b><i>Results:</i></b> RCC risk was significantly higher in carriers with the T allele of rs833061 within <i>VEGF</i> gene than those with CC genotype (CT+TT vs. CC) {adjusted odds ratio (OR) (95% confidence interval [CI]) = 1.71 (1.17–2.32), <i>p</i> = 0.002} and higher in carriers with the A allele of rs699947 within <i>VEGF</i> gene than those with GG genotype (GA+AA vs. GG) (adjusted OR [95% CI] = 1.64 [1.27–2.10], <i>p</i> &lt; 0.001). GMDR analysis indicated a significant 2-locus model (<i>p</i> = 0.0010) involving rs833061 and smoking. The cross-validation consistency of the 2-locus model was 10/10, and the testing accuracy was 60.72%. Current smokers with rs833061-CT+TT genotype had the highest RCC risk, compared to never smokers with rs833061-CC genotype within <i>VEGF</i> gene (OR [95% CI] = 3.02 [1.84–4.23], <i>p</i> &lt; 0.001). <b><i>Conclusions:</i></b> We found that the T allele of rs833061 and the A allele of rs699947 within <i>VEGF</i> gene, and the interaction between rs833061 and smoking were all associated with increased RCC risk.
DOI: 10.6084/m9.figshare.11993547.v1
title: Metadata record for: A 3 km spatially and temporally consistent European daily soil moisture reanalysis from 2000 to 2015

description: This dataset contains key characteristics about the data described in the Data Descriptor A 3 km spatially and temporally consistent European daily soil moisture reanalysis from 2000 to 2015. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.11993541
title: Aggregated CoFor forest management inventories

description: <br><b>Aggregated CoFor forest management inventories</b><br><br>Citation to the Data Descriptor: Ploton, P., Mortier, F., Cornu G., Réjou-Méchain, M., Bénédet, F., Bayol, N., Demarquez, B., Doucet, J.-L., Pélissier, R., Gourlet-Fleury, S., 2020. A map of African humid tropical forest aboveground biomass derived from management inventories, Scientific Data. doi:10.1038/s41597-020-0561-0.<br><br>* Corresponding author: Pierre Ploton (p.ploton@gmail.com)<br><br>If you would like to use the <b>Aggregated CoFor forest management inventories</b> dataset, we request that you provide recognition of the efforts of this group in collecting the data by :<br><br>1/ Using the citations for the dataset and associated Data Descriptor above.<br>2/ Including the following sentence in the Acknowledgement section of your manuscript: “<i>We would like to thank the following organizations: CIRAD, FRMi, Nature+ and TEREA for their work in compiling and auditing the CoFor dataset used in this article.</i>”<br>
DOI: 10.6084/m9.figshare.11993526
title: Supplementary Material for: Tea Consumption Is Associated with Decreased Disease Activity of Rheumatoid Arthritis in a Real-World, Large-Scale Study

description: <b><i>Introduction:</i></b> The role of tea consumption on rheumatoid arthritis (RA) has been studied in recent years, but no clear conclusion has been drawn as a result of small sample size of the studies or the fact that only in vitro studies have been performed. <b><i>Objectives:</i></b> The aim of this study was to explore the possible association of tea consumption with RA through a large-scale, real-world study. <b><i>Methods:</i></b> A total of 733 RA patients were investigated from June to December, 2016. The disease activity of RA was assessed according to disease activity score 28-erythrocyte sedimentation rate. The amount and types of tea consumption were recorded by on-site self-administered questionnaires. Logistic regression models were applied to analyze the correlation between tea consumption and disease activity, adjusting for demographics, clinical and laboratory factors. <b><i>Results:</i></b> There was an inverse association between tea consumption and disease activity in RA patients (OR 0.66, 95% CI 0.46–0.94). Compared with non-tea drinkers, a higher-intake of tea (&gt;750 mL/day) was associated with lower disease activity of RA (OR 0.39, 95% CI 0.19–0.79), but not low-intake (≤750 mL/day; OR 0.83, 95% CI 0.42–1.63). A significant dose-response association was found between the amount of tea consumption and disease activity (<i>p</i> for trend &lt;0.01). Further hierarchical regression analysis showed that such inverse associations were mainly present in female patients (<i>p</i> = 0.004), non-smokers (<i>p</i> = 0.01) or elders (≥60 years; <i>p</i> = 0.01). <b><i>Conclusion:</i></b> Tea consumption is associated with decreased disease activity of RA, suggesting the potential beneficial effect of tea in the disease.
DOI: 10.6084/m9.figshare.11993541.v1
title: Aggregated CoFor forest management inventories

description: <br><b>Aggregated CoFor forest management inventories</b><br><br>Citation to the Data Descriptor: Ploton, P., Mortier, F., Cornu G., Réjou-Méchain, M., Bénédet, F., Bayol, N., Demarquez, B., Doucet, J.-L., Pélissier, R., Gourlet-Fleury, S., 2020. A map of African humid tropical forest aboveground biomass derived from management inventories, Scientific Data. doi:10.1038/s41597-020-0561-0.<br><br>* Corresponding author: Pierre Ploton (p.ploton@gmail.com)<br><br>If you would like to use the <b>Aggregated CoFor forest management inventories</b> dataset, we request that you provide recognition of the efforts of this group in collecting the data by :<br><br>1/ Using the citations for the dataset and associated Data Descriptor above.<br>2/ Including the following sentence in the Acknowledgement section of your manuscript: “<i>We would like to thank the following organizations: CIRAD, FRMi, Nature+ and TEREA for their work in compiling and auditing the CoFor dataset used in this article.</i>”<br>
DOI: 10.6084/m9.figshare.11993505
title: Complete proteomics (LC-MS/MS) dataset of Pseudoalteromonas tunicata planktonic and biofilm cultures.

description: A complete proteomics dataset of <i>Pseudoalteromonas tunicata</i> D2 liquid cultures grown for 8 h (planktonic), 26 h (biofilm), 42 h (biofilm), and 68 h (biofilm). This Scaffold (.sf3) file contains all MS/MS based peptide and protein identifications for each of the four samples. PEAKS Studio v. 8.5 was used as a search engine with the NCBI <i>P. tunicata</i> D2 proteome (4503 entries, NCBI database, May 7, 2018) as a reference database. Additional details can be found within the .sf3 file.
DOI: 10.6084/m9.figshare.11993478
title: Data S1

description: Data S1 for Paredes et al 2020<br>
DOI: 10.6084/m9.figshare.11993439
title: Supplemental Online Material.docx

description: Supplemental Online Material for: <b>Potential for water balance by using rainwater: An analysis of Delhi, Megacity in India</b><b></b>
DOI: 10.6084/m9.figshare.11993478.v1
title: Data S1

description: Data S1 for Paredes et al 2020<br>
DOI: 10.5522/04/11993424
title: Systematic survey data for endemic land mammals from the Dominican Republic, 2010-2012

description: Systematic survey records for Hispaniolan solenodon and Hispaniolan hutia, collected in 2010-2012 from 289 randomised survey points within seven protected areas in the Dominican Republic. [76kb Excel file]<br><br>
DOI: 10.6084/m9.figshare.11993418
title: Supplemental table 3

description: <b>Supplementary table 3 </b>The DNA methylation level of DMRs related genes.
DOI: 10.6084/m9.figshare.11993439.v1
title: Supplemental Online Material.docx

description: Supplemental Online Material for: <b>Potential for water balance by using rainwater: An analysis of Delhi, Megacity in India</b><b></b>
DOI: 10.5522/04/11993424.v1
title: Systematic survey data for endemic land mammals from the Dominican Republic, 2010-2012

description: Systematic survey records for Hispaniolan solenodon and Hispaniolan hutia, collected in 2010-2012 from 289 randomised survey points within seven protected areas in the Dominican Republic. [76kb Excel file]<br><br>
DOI: 10.6084/m9.figshare.11993409
title: Supplemental table 2

description: <b>Supplemental table 2 </b>The DNA methylation level of<b> </b>DMRs related promoters.
DOI: 10.6084/m9.figshare.11993418.v2
title: Supplemental table 3

description: <b>Supplementary table 3 </b>The DNA methylation level of DMRs related genes.
DOI: 10.6084/m9.figshare.11993409.v1
title: Supplemental table 2

description: <b>Supplemental table 2 </b>The DNA methylation level of<b> </b>DMRs related promoters.
DOI: 10.6084/m9.figshare.11993418.v1
title: Supplemental table 3

description: <b>Supplementary table 3 </b>The DNA methylation level of DMRs related genes.
DOI: 10.5522/04/11993388
title: Historical locality records of endemic land mammals from the Dominican Republic

description: Opportunistic historical locality records for Hispaniolan solenodon (n=135) and Hispaniolan hutia (n=48) in the Dominican Republic, obtained from the published literature, museum accession records, and personal communication with field biologists. [59kb Excel file]
DOI: 10.5522/04/11993388.v1
title: Historical locality records of endemic land mammals from the Dominican Republic

description: Opportunistic historical locality records for Hispaniolan solenodon (n=135) and Hispaniolan hutia (n=48) in the Dominican Republic, obtained from the published literature, museum accession records, and personal communication with field biologists. [59kb Excel file]
DOI: 10.6084/m9.figshare.11993307
title: Metaplastic breast cancer: the role of molecular subtype in prognosis

description: The molecular subtype was not associated with the prognosis. In addition, patients could not benefit from CT. In contrast, RT might be associated with improved survival both OS and BCSS in TN MBC and HRp MBC but not HER2-positive patients. Those results will help to reduce the part of patients’ health hazards of x-ray radiation.
DOI: 10.6084/m9.figshare.11993277
title: Supplementary Material for: Test-Retest Reliability of Frontal and Parietal Alpha Asymmetry during Presentation of Emotional Face Stimuli in Healthy Subjects

description: Resting-state and event-related frontal alpha asymmetry have been suggested as potential neurobiological biomarkers for depression and other psychiatric conditions. To be used as such, sufficient test-retest reliability needs to be demonstrated. However, test-retest reliability is underinvestigated for event-related alpha asymmetry. The objective of this study was to examine both short-term within-session and long-term between-session reliability of stimulus-related medial and lateral frontal as well as parietal alpha EEG asymmetry in healthy subjects during a simple emotional face processing task. Twenty-three healthy adults participated in two sessions with a test-retest interval of about 1 week. Reliability was estimated with Pearson’s correlation coefficient and paired <i>t</i> test. Results revealed moderate to high within-session reliability of stimulus-related alpha asymmetry for all electrode sites and both conditions. Alpha asymmetry mean values did not change significantly within sessions. Between-session reliability was fair for frontomedial and moderate for frontolateral stimulus-related asymmetry. Exploratory exclusion of subjects with unstable between-session self-rating scores of emotional state and empathy toward stimuli resulted in some higher reliability values. Our results indicate that stimulus-related alpha asymmetry may serve as a useful electrophysiological tool given its adequate within-session reliability. However, long-term stability of stimulus-related frontal alpha asymmetry over 1 week was comparatively low and varied depending on electrode position. Influencing state factors during EEG recording, such as current mood or stimulus engagement, should be considered in future study designs and analyses. Further, we recommend to analyze alpha asymmetry from both frontomedial and frontolateral sites.
DOI: 10.6084/m9.figshare.11993277.v1
title: Supplementary Material for: Test-Retest Reliability of Frontal and Parietal Alpha Asymmetry during Presentation of Emotional Face Stimuli in Healthy Subjects

description: Resting-state and event-related frontal alpha asymmetry have been suggested as potential neurobiological biomarkers for depression and other psychiatric conditions. To be used as such, sufficient test-retest reliability needs to be demonstrated. However, test-retest reliability is underinvestigated for event-related alpha asymmetry. The objective of this study was to examine both short-term within-session and long-term between-session reliability of stimulus-related medial and lateral frontal as well as parietal alpha EEG asymmetry in healthy subjects during a simple emotional face processing task. Twenty-three healthy adults participated in two sessions with a test-retest interval of about 1 week. Reliability was estimated with Pearson’s correlation coefficient and paired <i>t</i> test. Results revealed moderate to high within-session reliability of stimulus-related alpha asymmetry for all electrode sites and both conditions. Alpha asymmetry mean values did not change significantly within sessions. Between-session reliability was fair for frontomedial and moderate for frontolateral stimulus-related asymmetry. Exploratory exclusion of subjects with unstable between-session self-rating scores of emotional state and empathy toward stimuli resulted in some higher reliability values. Our results indicate that stimulus-related alpha asymmetry may serve as a useful electrophysiological tool given its adequate within-session reliability. However, long-term stability of stimulus-related frontal alpha asymmetry over 1 week was comparatively low and varied depending on electrode position. Influencing state factors during EEG recording, such as current mood or stimulus engagement, should be considered in future study designs and analyses. Further, we recommend to analyze alpha asymmetry from both frontomedial and frontolateral sites.
DOI: 10.6084/m9.figshare.11993202
title: Italian dataset (Sazzini et al. 2020)

description: Whole genome sequence data generated for the Italian population and merged with reference datasets used for comparative analyses as described in Sazzini et al. 2020 (BMC Biology).
DOI: 10.5519/qd.iedsgzqg
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.11992545
title: Additional file 1 of Socio-economic impacts of brucellosis on livestock production and reproduction performance in Koibatek and Marigat regions, Baringo County, Kenya

description: Additional file 1. This is the raw data generated from the quantitative questionnaire administered to the respondents.
DOI: 10.6084/m9.figshare.11992545.v1
title: Additional file 1 of Socio-economic impacts of brucellosis on livestock production and reproduction performance in Koibatek and Marigat regions, Baringo County, Kenya

description: Additional file 1. This is the raw data generated from the quantitative questionnaire administered to the respondents.
DOI: 10.6084/m9.figshare.11992476
title: Additional file 1 of Physical characteristics and antimicrobial properties of Apis mellifera, Frieseomelitta nigra and Melipona favosa bee honeys from apiaries in Trinidad and Tobago

description: Additional file 1: Tables S1-S6. The phenol equivalence values calculated for each isolate used and the mean zone sizes produced by each honey. File name: Phenol equivalence supplementary data.xlsx.
DOI: 10.6084/m9.figshare.11992476.v1
title: Additional file 1 of Physical characteristics and antimicrobial properties of Apis mellifera, Frieseomelitta nigra and Melipona favosa bee honeys from apiaries in Trinidad and Tobago

description: Additional file 1: Tables S1-S6. The phenol equivalence values calculated for each isolate used and the mean zone sizes produced by each honey. File name: Phenol equivalence supplementary data.xlsx.
DOI: 10.25810/3gtp-yy33.7
title: North American Newspaper Coverage of Climate Change or Global Warming, 2000-2020 - July 2020 

description:         The Media and Climate Change Observatory Data monitors 117 sources (across newspapers, radio and TV) in 53 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.11992401
title: Additional file 3 of Most dominant roles of insect gut bacteria: digestion, detoxification, or essential nutrient provision?

description: Additional file 3. barcode sequences.
DOI: 10.6084/m9.figshare.11992401.v1
title: Additional file 3 of Most dominant roles of insect gut bacteria: digestion, detoxification, or essential nutrient provision?

description: Additional file 3. barcode sequences.
DOI: 10.6084/m9.figshare.11992395
title: Additional file 1 of Most dominant roles of insect gut bacteria: digestion, detoxification, or essential nutrient provision?

description: Additional file 1. Supplementary tables S1-S19.
DOI: 10.6084/m9.figshare.11992395.v1
title: Additional file 1 of Most dominant roles of insect gut bacteria: digestion, detoxification, or essential nutrient provision?

description: Additional file 1. Supplementary tables S1-S19.
DOI: 10.6084/m9.figshare.11992389
title: Additional file 8 of Culicoides species composition and molecular identification of host blood meals at two zoos in the UK

description: Additional file 8: Table S4. Effect of seasonality, year, temperature and trap location on the number of Culicoides collected.
DOI: 10.6084/m9.figshare.11992383
title: Additional file 7 of Culicoides species composition and molecular identification of host blood meals at two zoos in the UK

description: Additional file 7: Table S3. Comparison of different models for the number of Culicoides biting midges caught at London and Whipsnade zoos.
DOI: 10.6084/m9.figshare.11992389.v1
title: Additional file 8 of Culicoides species composition and molecular identification of host blood meals at two zoos in the UK

description: Additional file 8: Table S4. Effect of seasonality, year, temperature and trap location on the number of Culicoides collected.
DOI: 10.6084/m9.figshare.11992377
title: Additional file 6 of Culicoides species composition and molecular identification of host blood meals at two zoos in the UK

description: Additional file 6: Table S2. Results of blood meal analysis of Culicoides collected from ZSL London Zoo and Whipsnade Zoo.
DOI: 10.6084/m9.figshare.11992383.v1
title: Additional file 7 of Culicoides species composition and molecular identification of host blood meals at two zoos in the UK

description: Additional file 7: Table S3. Comparison of different models for the number of Culicoides biting midges caught at London and Whipsnade zoos.
DOI: 10.6084/m9.figshare.11992371
title: Additional file 5 of Culicoides species composition and molecular identification of host blood meals at two zoos in the UK

description: Additional file 5: Table S1. Species composition of blood-fed Culicoides caught in traps.
DOI: 10.6084/m9.figshare.11992377.v1
title: Additional file 6 of Culicoides species composition and molecular identification of host blood meals at two zoos in the UK

description: Additional file 6: Table S2. Results of blood meal analysis of Culicoides collected from ZSL London Zoo and Whipsnade Zoo.
DOI: 10.6084/m9.figshare.11992371.v1
title: Additional file 5 of Culicoides species composition and molecular identification of host blood meals at two zoos in the UK

description: Additional file 5: Table S1. Species composition of blood-fed Culicoides caught in traps.
DOI: 10.6084/m9.figshare.11992365
title: Additional file 4 of Culicoides species composition and molecular identification of host blood meals at two zoos in the UK

description: Additional file 4: Dataset 1. Full data set of collected Culicoides including site, trap location, collection date and morphological identification.
DOI: 10.6084/m9.figshare.11992365.v1
title: Additional file 4 of Culicoides species composition and molecular identification of host blood meals at two zoos in the UK

description: Additional file 4: Dataset 1. Full data set of collected Culicoides including site, trap location, collection date and morphological identification.
DOI: 10.6084/m9.figshare.11992344
title: Additional file 9 of Whole genome phylogeny of Gallus: introgression and data-type effects

description: Additional file 9: Trees from Kimball and Braun (2014)
DOI: 10.6084/m9.figshare.11992344.v1
title: Additional file 9 of Whole genome phylogeny of Gallus: introgression and data-type effects

description: Additional file 9: Trees from Kimball and Braun (2014)
DOI: 10.6084/m9.figshare.11992320
title: Additional file 5 of Whole genome phylogeny of Gallus: introgression and data-type effects

description: Additional file 5: Table S2. This file comprises two sheets with information on the fit of gene trees or transversional changes to the three possible quartets produced by deleting a single taxon.
DOI: 10.6084/m9.figshare.11992320.v1
title: Additional file 5 of Whole genome phylogeny of Gallus: introgression and data-type effects

description: Additional file 5: Table S2. This file comprises two sheets with information on the fit of gene trees or transversional changes to the three possible quartets produced by deleting a single taxon.
DOI: 10.25592/uhhfdm.1458
title: CHILD-L2

description: Video recordings of French and German children that start acquiring German or French as an L2 with varying AOAs, mainly of approx. 3 years. Some families use additional languages, mainly English. The child is addressed in the L2 in the recording sessions, which are of the type interviewer/child interaction. On an average, for each child there is data from two occasions each year during two years. Only transcripts and metadata are available. Orthographic transcription according to project internal conventions.
DOI: 10.6084/m9.figshare.11992308
title: Additional file 3 of Whole genome phylogeny of Gallus: introgression and data-type effects

description: Additional file 3: One sheet (Gene tree counts): The graph presents the expected counts of gene trees given the coalescent branch lengths in the ASTRAL trees (GT = ASTRAL tree based on gene trees; TV = ASTRAL tree based on perfect transversions); the other sheet (Data type info): The graph presents the expected frequencies of each gene tree topology given the GT ASTRAL tree and the observed frequencies of each gene tree after subdividing trees by their source (exon, intron, or UCE).
DOI: 10.6084/m9.figshare.11992311
title: Additional file 4 of Whole genome phylogeny of Gallus: introgression and data-type effects

description: Additional file 4: This file includes four sets of phylogenomic trees for the genus Gallus.