cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13326406
title: Núcleo_A&B

description: Tabelas contendo as informações das análises feitas no CellProfiler, com as amostras in vitro de glioblastoma (GB) da UFRGS, para a comparação entre núcleos tratados com e sem temozolamida (TMZ).
DOI: 10.15468/dl.xadbz6
title: Occurrence Download

description: A dataset containing 17544 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Tayassu pecari (Link, 1795)"
 ]
}

 The dataset includes 17544 records from 158 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068336-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26624047
title: Additional file 3 of Alterations of the gut microbiota in patients with postherpetic neuralgia

description: Additional file 3: Table S2. Clinical information for all samples.
DOI: 10.6084/m9.figshare.26624167.v1
title: Additional file 3 of Weighted gene co-expression network analysis identified hub genes critical to fatty acid composition in Gushi chicken breast muscle

description: Additional file 3: Table S3.  The information of known genes in the 19 modules.
DOI: 10.5285/8bf4bafb-6641-4324-bf76-9db776f61112
title: Cretaceous to Recent Uplift Measurements from Marine Fossil Assemblages

description: Cretaceous to Recent marine assemblages (total of 24,372) used to measure uplift, interpreted paleo-water depths and measured uplift. This inventory contains information about age, location, stratigraphic origin (i.e., formation, unit, member), lithology, paleoenvironment, and tectonic setting at the time of deposition and references to original source material.
An extended methodology is presented in, Victoria M. Fernandes, Gareth G. Roberts; Cretaceous to Recent net continental uplift from paleobiological data: Insights into sub-plate support. GSA Bulletin 2020;; 133 (5-6): 1217–1236. doi: https://doi.org/10.1130/B35739.1
Examples of this information being used to test mantle convection simulations is presented in, Victoria, M. Fernandes, Gareth G. Roberts, Fred Richards; Testing Mantle Convection Simulations With Paleobiology and Other Stratigraphic Observations: Examples From Western North America. G-Cubed 2024; 25(e2023GC011381). doi: https://doi.org/10.1029/2023GC011381
DOI: 10.6084/m9.figshare.26624044.v1
title: Additional file 2 of Alterations of the gut microbiota in patients with postherpetic neuralgia

description: Additional file 2: Table S1. Dietary data of all participants.
DOI: 10.15468/dl.aytr5s
title: Occurrence Download

description: A dataset containing 141 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron correoides J.J.Sm."
 ]
}

 The dataset includes 141 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068339-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26624050
title: Additional file 4 of Alterations of the gut microbiota in patients with postherpetic neuralgia

description: Additional file 4: Table S3. The difference of gut microbiota abundance between PHN patients and HCs.
DOI: 10.6084/m9.figshare.26624047.v1
title: Additional file 3 of Alterations of the gut microbiota in patients with postherpetic neuralgia

description: Additional file 3: Table S2. Clinical information for all samples.
DOI: 10.6084/m9.figshare.26624044
title: Additional file 2 of Alterations of the gut microbiota in patients with postherpetic neuralgia

description: Additional file 2: Table S1. Dietary data of all participants.
DOI: 10.6084/m9.figshare.26624050.v1
title: Additional file 4 of Alterations of the gut microbiota in patients with postherpetic neuralgia

description: Additional file 4: Table S3. The difference of gut microbiota abundance between PHN patients and HCs.
DOI: 10.6084/m9.figshare.24264600.v1
title: Additional file 1 of Comparative analysis of response to treatments and molecular features of tumor-derived organoids versus cell lines and PDX derived from the same ovarian clear cell carcinoma

description: Additional file 1: Supplementary Table 1. List of the differentially expressed genes and results of the enriched gene set analysis associated with Figure 5.
DOI: 10.15468/dl.xk35hf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.868069 -33.126067, 148.868069 -33.132805, 148.872561 -33.132805, 148.872561 -33.128313, 148.874807 -33.128313, 148.874807 -33.126067, 148.868069 -33.126067))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068340-240626123714530/datasets/export for details.
DOI: 10.5281/zenodo.13221671
title: 2024_Weeklyspecies_richness_abundance_selectedWNV_birdhosts_ Ebirddata

description:  

Abstract:

Raw weekly abundance data at 3km resolution was downloaded from EBIRD (https://science.ebird.org/en/use-ebird-data) for 12 listed WNV bird hosts.  These data were converted to presence-absence and then combined to give a species number each week.  The abundance data were also processed to provide the Sum and Mean abundance for every week.  

 

If a species is missing, a weekly dataset is removed from the Mean value calculations for that week.  To maintain a constant maximum presence number in the summed number of present species,  missing weeks are filled with the last valid presence week up to halfway through the gap in availability, then with the first available distribution after the gap.

 

Species list: Carrion Crow; Wood Pigeon, European Collared Dove; European Blackbird; European Jackdaw; European Jay; European Kestrel; European Magpie; Herring Gull, Hooded Crow; House Sparrow; Little Owl.

 

 

 



File naming scheme: 

Files are:

e4ebirdweeklyabundancemarini: all weekly abundance datasets at 3km resolution. 

e4ebirdweeklyPAMarini: abundance with missing recoded to 0.  This is based on ad hoc checks of weekly datasets against the birdlife species ranges,  which suggest that the maximum extents of combined weekly abundance distributions match the range boundaries fairly well.

e4ebirdweeklyspprichnesMariniSUMMEANweeklymarini: summed and mean weekly presence-absence for all species. 

 

Projection + EPSG code:Latitude-Longitude/WGS84 (EPSG: 4326)

Spatial extent:Extent   -32.0000000000000000,10.0000000000000000 : 68.9999999999999574,81.9999999999999716

Spatial resolution:3km

Pixel values:Number of species per pixel for each category

Source: 

Data obtained from Ebird  https://science.ebird.org/en/status-and-trends/species/

Software used:ArcMap 10.8

License: CC-BY-SA 4.0

Processed by:ERGO (Environmental Research Group Oxford) https://ergoonline.co.uk/ for the H2020 MOOD project
DOI: 10.5281/zenodo.13221672
title: 2024_Weeklyspecies_richness_abundance_selectedWNV_birdhosts_ Ebirddata

description:  

Abstract:

Raw weekly abundance data at 3km resolution was downloaded from EBIRD (https://science.ebird.org/en/use-ebird-data) for 12 listed WNV bird hosts.  These data were converted to presence-absence and then combined to give a species number each week.  The abundance data were also processed to provide the Sum and Mean abundance for every week.  

 

If a species is missing, a weekly dataset is removed from the Mean value calculations for that week.  To maintain a constant maximum presence number in the summed number of present species,  missing weeks are filled with the last valid presence week up to halfway through the gap in availability, then with the first available distribution after the gap.

 

Species list: Carrion Crow; Wood Pigeon, European Collared Dove; European Blackbird; European Jackdaw; European Jay; European Kestrel; European Magpie; Herring Gull, Hooded Crow; House Sparrow; Little Owl.

 

 

 



File naming scheme: 

Files are:

e4ebirdweeklyabundancemarini: all weekly abundance datasets at 3km resolution. 

e4ebirdweeklyPAMarini: abundance with missing recoded to 0.  This is based on ad hoc checks of weekly datasets against the birdlife species ranges,  which suggest that the maximum extents of combined weekly abundance distributions match the range boundaries fairly well.

e4ebirdweeklyspprichnesMariniSUMMEANweeklymarini: summed and mean weekly presence-absence for all species. 

 

Projection + EPSG code:Latitude-Longitude/WGS84 (EPSG: 4326)

Spatial extent:Extent   -32.0000000000000000,10.0000000000000000 : 68.9999999999999574,81.9999999999999716

Spatial resolution:3km

Pixel values:Number of species per pixel for each category

Source: 

Data obtained from Ebird  https://science.ebird.org/en/status-and-trends/species/

Software used:ArcMap 10.8

License: CC-BY-SA 4.0

Processed by:ERGO (Environmental Research Group Oxford) https://ergoonline.co.uk/ for the H2020 MOOD project
DOI: 10.6084/m9.figshare.26579642.v1
title: Additional file 1 of HIV-1 subtype C Nef-mediated SERINC5 down-regulation significantly contributes to overall Nef activity

description: Additional file 1. In vitro Nef functional measurements and E values of patient-derived Nef clones. Excel file showing in vitro Nef functional measurements (SERINC5 down-regulation, CD4 down-regulation, HLA-I down-regulation and alteration of TCR signalling) for Nef clones derived from individuals in early subtype C infection. Nef functions are expressed relative to SF2 Nef (where SF2 Nef function = 1). E values, which are a proxy for overall Nef function in vivo, have been predicted by computational modelling for each of these patient-derived Nef clones (17) and are shown alongside the in vitro Nef functional measurements. dE0 values were derived from the Nef fitness landscape Ising model (only the consensus amino acid present at each residue was modelled explicitly) for each Nef clone, while dE90 values were derived from the Nef fitness landscape Potts model (each amino acid present at each residue was modelled explicitly). Clinical measurements, including viral load set point (log10 copies/ml), rate of CD4+ T cell decline (cells/mm3 per month), baseline viral load (log10 copies/ml), baseline CD4+ T cell count (cells/mm3) and follow-up time (the number of days from first CD4+ T cell count to last CD4+ T cell count available) are also shown.
DOI: 10.6084/m9.figshare.26728141
title: Additional file 2 of Proteome profiling of Campylobacter jejuni 81–176 at 37 °C and 42 °C by label-free mass spectrometry

description: Supplementary Material 2: Table S1: Differencially expressed proteins according to Temperature
DOI: 10.6084/m9.figshare.26728141.v1
title: Additional file 2 of Proteome profiling of Campylobacter jejuni 81–176 at 37 °C and 42 °C by label-free mass spectrometry

description: Supplementary Material 2: Table S1: Differencially expressed proteins according to Temperature
DOI: 10.6084/m9.figshare.26624314
title: Additional file 29 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 29: Table S4. Integrative mouse gene set found by taking all genes that were differentially expressed between EMT, squamous, and microacinar histological subtypes that also had copy number differences present from the whole genome sequencing data. The rationale behind this is that if the MMTV-Myc histological subtype preferentially represent different human intrinsic breast cancer subtypes, the combination of genomic and transcriptomic data will limit the number of genes used in unsupervised hierarchical clustering to those that matter most.
DOI: 10.6084/m9.figshare.26624320.v1
title: Additional file 31 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 31: Table S6. Data for constructing the Kaplan-Meier plot of MYC amplified and unaltered breast cancer patients by probability of overall survival in months. Includes bounds for 95% confidence intervals, number at risk, and standard error calculations.
DOI: 10.6084/m9.figshare.26624329
title: Additional file 34 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 34: Table S9. Raw data obtained from cBioPortal for all breast cancer patients separated by KRAS amplification/mutation status. Redundant patient samples have not been removed.
DOI: 10.6084/m9.figshare.26624332
title: Additional file 35 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 35: Table S10. Data for constructing the Kaplan-Meier plot of FGFR2 amplified and unaltered breast cancer patients by probability of overall survival in months. Includes bounds for 95% confidence intervals, number at risk, and standard error calculations.
DOI: 10.15468/dl.qm7hhs
title: Occurrence Download

description: A dataset listing the 9094 species recorded in GBIF matching the query:
{
 "HostingOrganizationKey" : [
 "is d33a9c4e-e33c-4311-a2fe-88dbdff7b4b9"
 ]
}

 The dataset's 9094 records were derived from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068327-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26624167
title: Additional file 3 of Weighted gene co-expression network analysis identified hub genes critical to fatty acid composition in Gushi chicken breast muscle

description: Additional file 3: Table S3.  The information of known genes in the 19 modules.
DOI: 10.15468/dl.je9eka
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.897884 -33.128313, 147.897884 -33.132805, 147.909113 -33.132805, 147.909113 -33.128313, 147.897884 -33.128313))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068341-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26624233.v1
title: Additional file 3 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 3: Human (NP_000213.1) and mouse (NP_001116205.1) KIT protein sequence alignment using Clustal Omega 1.2.4. The percent identity matrix calculated by Clustal 2.1 is shown at the bottom. The percent identity between human and mouse KIT protein is 82.77%.
DOI: 10.6084/m9.figshare.26624236.v1
title: Additional file 4 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 4: Human (NP_000955.1) and mouse (NP_001169999.1) RARA protein sequence alignment using Clustal Omega 1.2.4. The percent identity matrix calculated by Clustal 2.1 is shown at the bottom. The percent identity matrix between human and mouse RARA protein is 89.98%.
DOI: 10.6084/m9.figshare.26624023.v1
title: Additional file 3 of MiR-4649-5p acts as a tumor-suppressive microRNA in triple negative breast cancer by direct interaction with PIP5K1C, thereby potentiating growth-inhibitory effects of the AKT inhibitor capivasertib

description: Additional file 3. RNA-seq Data.
DOI: 10.6084/m9.figshare.26624023
title: Additional file 3 of MiR-4649-5p acts as a tumor-suppressive microRNA in triple negative breast cancer by direct interaction with PIP5K1C, thereby potentiating growth-inhibitory effects of the AKT inhibitor capivasertib

description: Additional file 3. RNA-seq Data.
DOI: 10.15468/dl.m2jn4z
title: Occurrence Download

description: A dataset containing 31421143 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "InstitutionCode is one of (nhmuk, k, meisebg, GNM, RBGE, HUJ, LI, MA, MCSN, MFN, ZMB, MIZPAN, MNCN, MNCN_FZ, MNHN, MZH, Naturalis Biodiversity Center, NHMC, NHMW, NMBE, NML, NMNHS, NMP, NMS, NMW, NRM, O, PRC, RBINS, RJB-CSIC, RMCA, SAV, SMNS, SNM, TAA, TAM, UMB, UTE, ZFMK, ZMK, ZSRO, h)"
 ]
}

 The dataset includes 31421143 records from 540 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068301-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/hvp7m2
title: Gebrukothuria profundus, a new genus and species of laetmogonid holothurian (Elasipodida, Laetmogonidae) from around the Crozet Plateau in the Southern Indian Ocean *

description: This dataset contains the digitized treatments in Plazi based on the original journal article Rogacheva, Antonina, Cross, Ian A., Billett, David S. M. (2009): Gebrukothuria profundus, a new genus and species of laetmogonid holothurian (Elasipodida, Laetmogonidae) from around the Crozet Plateau in the Southern Indian Ocean *. Zootaxa 2096 (1): 479-483, DOI: 10.11646/zootaxa.2096.1.29, URL: https://biotaxa.org/Zootaxa/article/view/zootaxa.2096.1.29AbstractA new genus and species of laetmogonid holothurian (Elasipodida, Laetmogonidae), collected from around the Crozet Plateau in the Southern Indian Ocean, is described. It differs from other members of the family in that the body wall lacks the wheel-shaped calcareous deposits completely. Instead only rods are present. The genus is also distinguished by the combination of other morphological characters lacking in other known genera: absence of circum-oral and ventrolateral papillae together with development of midventral tube feet. All other members of the family Laetmogonidae are known to have wheel-shaped deposits, therefore diagnosis of the family is refined.
DOI: 10.15468/wvqbkh
title: Contributions to the genus Bolbochromus Boucomont, 1909 (Coleoptera: Geotrupidae: Bolboceratinae) from China, with the description of a new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gao, Hao, Geshev, Georgi A., Yang, Qiao-Zhi (2025): Contributions to the genus Bolbochromus Boucomont, 1909 (Coleoptera: Geotrupidae: Bolboceratinae) from China, with the description of a new species. Zootaxa 5566 (2): 381-390, DOI: 10.11646/zootaxa.5566.2.8, URL: https://doi.org/10.11646/zootaxa.5566.2.8AbstractA new species of the genus Bolbochromus Boucomont, 1909, Bolbochromus sunfengyii Gao & Yang, new species, is described from Yunnan, China. The female of B. nomurai Li & Krikken, 2013 is described for the first time. Bolbochromus sinensis Krikken & Li, 2013 is newly recorded from Jiangxi and Zhejiang Provinces. Elytral color pattern variations of the aforementioned species are also provided.
DOI: 10.15468/sabxhf
title: New insights into Lactocollybia (Agaricales, Basidiomycota): Morpho-phylogenetic analyses revealing two interesting species and one new record from Thailand and evidence of intercontinental conspecificity

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bera, Ishika, Wisitrassameewong, Komsit, Thongklang, Naritsada (2025): New insights into Lactocollybia (Agaricales, Basidiomycota): Morpho-phylogenetic analyses revealing two interesting species and one new record from Thailand and evidence of intercontinental conspecificity. MycoKeys 118: 313-344, DOI: 10.3897/mycokeys.118.144986AbstractThe genus Lactocollybia (incertae sedis, Agaricales) is a small and relatively understudied group of mushrooms, exhibiting unique morphological and ecological characteristics. Most species have a saprobic lifestyle, distributed in tropical to subtropical regions. Currently, the phylogenetic relationships of species remain poorly understood due to insufficient DNA sequence data of existing species. This study is an integrative approach, combining morphological characteristics and molecular analyses using nrITS and two-locus (nrITS - nrLSU) phylogenetic estimation. For the latter, we tested phylogenetic lineages of publicly available nrITS sequences and six samples from Thailand. Our phylogenies have revealed that Thai samples are placed in three phylogenetic clades, in which one of them is proposed as a new species, L. polyhabitata, whereas L. variicystis is reported for the first time from Thailand, suggesting a broader distribution of this species in the tropical region. Another species, L. cf. epia, has been critically analyzed for its affinity towards L. epia. All studied species are placed in phylogenetic clades with a multitude of collections from different continents, which suggests the evidence of intercontinental conspecificity across tropical and subtropical regions.
DOI: 10.15468/dl.goaafw
title: Occurrence Download

description: A dataset containing 4519 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nothoprocta perdicaria (Kittlitz, 1830)"
 ]
}

 The dataset includes 4519 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015083-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yngbfq
title: Occurrence Download

description: A dataset containing 6076 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parthenium hysterophorus L."
 ]
}

 The dataset includes 6076 records from 209 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008409-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.svfk7j
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Grewia tenax (Forssk.) Fiori"
 ]
}

 The dataset includes 59 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063008-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2mscdj
title: Occurrence Download

description: A dataset containing 58342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "TaxonKey is Tortricidae",
 "Year 2008-2021"
 ]
}

 The dataset includes 58342 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071601-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m7rb4f
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tillandsia dugesii Baker"
 ]
}

 The dataset includes 131 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008409-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.77bbdc
title: Occurrence Download

description: A dataset containing 8190 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Triticum aestivum L."
 ]
}

 The dataset includes 8190 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071600-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.