cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21445665.v1
title: Visualizing orthogonal RNAs simultaneously in live mammalian cells by fluorescence lifetime imaging microscopy (FLIM)

description: Data collected for and adjacent to project titled " Visualizing orthogonal RNAs simultaneously in live mammalian cells by fluorescence lifetime imaging microscopy (FLIM) " by Braselmann Lab (2022)
DOI: 10.6084/m9.figshare.27323880.v1
title: Supplementary Material for: Deep learning-based algorithm for staging secondary caries in bitewings

description: Introduction: Despite the notable progress in developing artificial intelligence (AI)-based tools for caries detection in bitewings, limited research has addressed the detection and staging of secondary caries. Therefore, we aimed to develop a Convolutional neural network (CNN)-based algorithm for these purposes using a novel approach for determining lesion severity. Methods: We used a dataset from a Dutch dental practice-based research network containing 2,612 restored teeth in 413 bitewings from 383 patients aged 15 to 88 years and trained the Mask R-CNN architecture with a Swin Transformer backbone. Two-stage training fine-tuned caries detection accuracy and severity assessment. Annotations of caries around restorations were made by two evaluators and checked by two other experts. Aggregated accuracy metrics (mean ± Standard Deviation - SD) in detecting teeth with secondary caries were calculated considering two thresholds: detecting all lesions and dentine lesions. The correlation between the lesion severity scores obtained with the algorithm and the annotators’ consensus was determined using the Pearson correlation coefficient and Bland-Altman plots. Results: Our refined algorithm showed high specificity in detecting all lesions (0.966 ± 0.025) and dentine lesions (0.964 ± 0.019). Sensitivity values were lower: 0.737 ± 0.079 for all lesions and 0.808 ± 0.083 for dentine lesions. The areas under ROC curves (SD) were 0.940 (0.025) for all lesions and 0.946 (0.023) for dentine lesions. The correlation coefficient for severity scores was 0.802. Conclusion: We developed an improved algorithm to support clinicians in detecting and staging secondary caries in bitewing, incorporating an innovative approach for annotation, considering the lesion severity as a continuous outcome.
DOI: 10.17632/wxyb4wt7j2
title: Identification of a drug-response gene in multiple myeloma through  longitudinal single-cell transcriptome sequencing. Masuda et al.

description: Despite recent therapeutic advances for multiple myeloma (MM), relapse is very common. Here, we conducted longitudinal single-cell transcriptome sequencing (scRNA-seq) of MM cells from a patient with relapsed MM, treated with multiple anti-myeloma drugs. We observed five subclusters of MM cells, which appeared and/or disappeared in response to the therapeutic pressure, and identified cluster 3 which emerged during lenalidomide treatment and disappeared after proteasome inhibitor treatment. Among the differentially expressed genes in cluster 3, we found a candidate drug-response gene; pellino E3 ubiquitin protein ligase family member 2 (PELI2), which is responsible for PI-induced cell death in in vitro assay. Kaplan-Meier survival analysis of database revealed that higher expression of PELI2 is associated with better prognosis. Our integrated strategy combining longitudinal scRNA-seq analysis, in vitro functional assay, and database analysis would facilitate the understanding of clonal dynamics of MM in response to anti-myeloma drugs and identification of drug response genes.
DOI: 10.17632/y2xj9wcnsf
title: A standardised ethogram for the Psittaciformes

description: Data about Psittaciformes ethograms present in the scientific literature
DOI: 10.6084/m9.figshare.25441192.v1
title: Nicotiana benthamiana KLAB(NbKLAB) Genome assembly and annotation

description: Nicotiana benthamiana KLAB(NbKLAB) Genome assembly and annotation
DOI: 10.6084/m9.figshare.28266821.v1
title: Antarctic Culture Collection - A comprehensive survey of soil microbial diversity across the Antarctic continent

description: Table with details of the bacterial and fungal isolates described in <b>A comprehensive survey of soil microbial diversity across the Antarctic continent</b>. Table includes information about the sample each isolate was derived from, specific conditions used for cultivation (media, pH, temperature), taxonomic classification of each culture, and the 16S rRNA gene or ITS region sequences for each isolate.
DOI: 10.6084/m9.figshare.28602074.v1
title: Analysis code and data related to the effects of environmental temperature on ant nest digging rate, on the shape of excavated nests and on ant movement speed

description: Experimental populations of the ant Lasius flavus were confined to dig in a quasi two-dimensional layer of clay and sand at controlled temperature in the range 15 - 30 degrees Celsius. The dataset contains measurements of digging rate (cm/hour) and morphological indicators of nest shape. A second dataset contains measurements of the movement speed (walking) of ants from the same colonies over a wide range of temperature conditions.The analysis code to process the data and plot them as graphs is also provided.
DOI: 10.17632/49ybbhhkpm
title: Data Set of Corporate Image in The Hospitality Industry East Java, Indonesia

description: The hypothesis built in the study wants to prove that the functional corporate image and corporate psychological image are able to measure the company's image in the hotel hospitality industry. This type of research is quantitative research. The questionnaire was used as a research instrument to collect data, and apply a Likert scale with a choice of five being strongly agreed; four is agreeing, three is neutral, two is disagreeing, and one is strongly disagreeing. Research respondents are managers who work in star-rated hotels in East Java. The number of managers is 621 managers. Samples were selected as many as 232 managers. The average research sample was 38.16%. This figure is still in the relevant category in determining the research sample. Data analysis techniques using CFA analysis and description. Before a CFA analysis is carried out, an exploratory factor (EFA) analysis is first carried out, to classify indicators that are variable dimensions (Frane & Hill, 1976). CFA analysis to ensure that the selected indicator can reflect the measured variable. To assess the level of understanding using factor loading figures. Description analysis is used to determine the respondents' perceptions of each measurement. Researchers used the SPSS and Amos programs to conduct data analysis.
DOI: 10.6084/m9.figshare.25540291.v1
title: TASC_Datasets

description: Samples of the datasets used for the paper '<b>Temporally Aligned Segmentation and Clustering (TASC): A generalized framework for behavior time series analysis</b>'.'Rats' dataset contains landmarks akin to DeepLabCut but trimmed of the custom likelihood column.'Non-human' dataset contains landmarks for three joints in the DeepLabCut format.
DOI: 10.6084/m9.figshare.29145257.v1
title: Pollinator Abundance, Diversity and Richness Data in Avocado Orchards in Chile

description: This dataset was collected as part of a study examining the role of natural habitats and wild pollinators in avocado production in central Chile. The data were gathered across three commercial avocado orchards over three years and include the following components:<b>Flower visitor surveys</b>: Observational data on the abundance, richness, diversity, and visitation rates of insect flower visitors collected at varying distances from natural habitat and control edges into avocado orchards.<b>Pollination exclusion and hand pollination experiments</b>: Experimental data from controlled pollination trials assessing fruit set in relation to insect pollination and distance to natural habitat.<b>Pollination effectiveness trials</b>: Data on single-visit pollination effectiveness of different insect taxa, including hoverflies, other flies, and honeybees.<b>Pollinator Abundance and Fruit Set:</b> Data on individual pollinator abundance and fruit set.Data are presented in tabular format (e.g., CSV or Excel) and include variables such as insect species or taxon, visitation counts, flower-level treatments, fruit set outcomes, and distance from natural habitat. These data provide insights into how proximity to natural habitat influences insect pollinator communities and their contribution to avocado pollination and yield.
DOI: 10.6084/m9.figshare.28603517.v1
title: SNP dataset for GWAS of plant height in spinach

description: This SNP dataset consisted of 15058 SNPs across 307 spinach accessions was used to conduct genome-wide association study (GWAS) and genomic prediction (GP) for plant height (tallness) in spinach.
DOI: 10.6084/m9.figshare.28838192.v2
title: <b>Whole-transcriptome dynamics of testicular development in Junggar Bactrian camels: A comparative analysis before and after sexual maturation</b>

description: Testicular development is a conserved and tightly regulated biological process. Understanding the molecular mechanisms underlying testicular development in Bactrian camels will benefit the advancement of related industries. In this study, transcriptomic analyses were conducted on testicular tissues of Junggar Bactrian camels at 3 years of age (pre-sexual maturity, Group C) and 5 years of age (post-sexual maturity, Group E). A total of 7,031 differentially expressed (DE) mRNAs were identified between the two groups, of which 4,169 were upregulated and 2,871 downregulated. Additionally, 291 differentially expressed long non-coding RNAs (DElncRNAs) were detected, including 207 upregulated and 84 downregulated transcripts, and 142 differentially expressed microRNAs (DEmiRNAs) were identified, of which 108 were upregulated and 34 were downregulated. Among the identified DERNAs, 291 DElncRNAs and 87 DEmiRNAs were previously unreported, providing valuable candidates for future investigations into the molecular mechanisms of testicular development and spermatogenesis in male Bactrian camels. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses revealed that commonly differentially expressed genes during testicular development are mainly involved in signal transduction (biological process, BP), synaptonemal complex formation (cellular component, CC), calcium ion binding (molecular function, MF), as well as signaling pathways such as insulin, MAPK, and PI3K-Akt. This study analyzed the differential expression of mRNAs, lncRNAs, and miRNAs before and after sexual maturity in Junggar Bactrian camels, providing a valuable reference for future research on testicular development and spermatogenesis in this species.
DOI: 10.6084/m9.figshare.29109647.v1
title: Interview Nadia.docx

description: In-depth interview transcription
DOI: 10.15468/dl.u83t29
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sagamichthys schnakenbecki (Krefft, 1953)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((26.9648 10.8496,17.9648 10.8496,17.9648 1.8496,26.9648 1.8496,26.9648 10.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013135-250525065834625/datasets/export for details.
DOI: 10.17632/86w76mfcp4
title: Manuscript

description: Original manuscript Assessment of intravascular volume status is difficult in critically ill patients. Evidence suggests that only 50% of hemodynamically unstable patients respond to a fluid challenge. Moreover, if cardiopulmonary function cannot compensate for the increase in preload, fluid loading may compromise microvascular perfusion, oxygen delivery and cause or aggravate peripheral and pulmonary edema. Inappropriate fluid expansion can increase morbidity and mortality thus making it important to accurately assess fluid responsiveness in critically ill patients. The volume responsiveness can be defined as a 15% increase in stroke volume (SV) or cardiac output (CO) after a 500-ml infusion.This study tested whether echocardiographic parameters can predict fluidresponsiveness in critically ill patients following a low volume 100-ml crystalloidsolution infusion over 1 minute
DOI: 10.6084/m9.figshare.23635512.v1
title: Ribosome profiling data from the model diatom <em>Thalassiosira pseudonana Part 2</em>

description: Sequencing data from ribosome profiling run described in the protocol paper 'Ribosome profiling in the model diatom <em>Thalassiosira pseudonana'</em> <br> <em>HT_4: High temperature exposure (</em>32°C) f<em>or 4 hours</em> <em>HT_24: High temperature exposure (</em>32°C) f<em>or 24 hours</em>
DOI: 10.6084/m9.figshare.24271183.v1
title: Datasets

description: Data for shell and tube heat exchanger
DOI: 10.6084/m9.figshare.25773372.v1
title: Elian et al.

description: Extensive research has been devoted towards understanding the significance of animal personality, particularly in exploring potential links between consistent individual differences in behavioural traits and other underlying traits. The ‘personality-productivity’ hypothesis suggests a link between behaviour and individual differences in life-history traits, whereby individuals that are highly productive (grow fast, reproduce often) are expected to be more active, aggressive and bold, traits which are likely to contribute to growth-mortality trade-offs. Here, we tested the relationship between boldness (measured as latency to deconglobate from a defensive posture), growth rate, and survival in pill bugs (<i>Armadillidium vulgare</i>) in a controlled lab environment. We concurrently measured boldness and body mass on 94 individuals, once per week for 18 weeks, for a total of 1,168 paired measurements, and analysed the data using bivariate random regression model which accounted for among- and within-individual covariance between mass, growth and boldness. Despite significant variation in boldness, plasticity in boldness and growth rate, we found that neither boldness nor plasticity in boldness were correlated with growth rate. However, we found a significant positive among-individual correlation between latency to deconglobate and body mass, which support the asset protection principle at the among-individual level (i.e., large individuals were shy, small individuals were bold). By contrast, the within-individual correlation between latency to deconglobate and body mass was negative, suggesting the role of correlated plasticity in response to another state variable (e.g., metabolic rate, hydration levels). Overall, the study provides no evidence for the personality-productivity hypothesis, but does show evidence of state-behaviour relationships between boldness and body mass.
DOI: 10.6084/m9.figshare.3554754.v1
title: Appendix A. Replication principle for the expected species richness when expected sample coverage is standardized.

description: Replication principle for the expected species richness when expected sample coverage is standardized.
DOI: 10.17632/tsm8v2vwjb
title: Data_PSS_Job performance

description: Data assessing the impact of Perceived supervisor support on employee job performance in the hospitality industry in Vietnam.
DOI: 10.17632/y7sn5s7w29
title: Sustainability practices, marketing, and reputation: evidence from an emerging market

description: The hotel industry uses large amounts of resources which negatively impacts the environment. Therefore, it is necessary that they implement sustainable business practices which would not only preserve the environment but also lead to improved business reputation and consequently outcomes. This study aims to investigate and validate the effects of sustainability practices on hotels’ reputation and to highlight the mediating role that green marketing plays in this regard. A conceptual framework was developed to test the proposed hypotheses. The statistical results of the study confirm that sustainability practices have a positive association with hotel reputation and that marketing is a mediator in this association. The results advocate the implementation of sustainability as a strategic initiative for the well-being of the environment and the organization as well.
DOI: 10.6084/m9.figshare.12071520.v1
title: Input GrayScale Image Dataset

description: This dataset contains the 16 bit images of DAPI stained nuclei used both in training (Labelled as "Original") or inference (Labelled as "Biological" or "Technical) for the MRCNN and FPN2-WS networks
DOI: 10.6084/m9.figshare.28669367.v1
title: Species Identification from Highlights of the Swedish Slow-TV Programme <i>The Great Moose Migration</i> (2023–2024 Broadcast Seasons)

description: This dataset compiles timestamped wildlife observations from the 2023 and 2024 seasons of <i>Den Stora Älgvandringen</i> (“The Great Moose Migration”), a Swedish nature broadcast. Each entry corresponds to a specific highlight clip in which one or more animal species appeared on screen. The dataset includes 941 entries and records the date, time, a brief description title of the scene, the taxonomic group(s) observed, and the common and Latin names of the identified animals. Species identification was conducted manually by the dataset author. The dataset offers a unique, curated record of animal appearances in a popular, slow-TV wildlife broadcast, and may be of interest to researchers studying media representations of wildlife, citizen science, or species visibility in digital nature experiences.
DOI: 10.6084/m9.figshare.20418000.v1
title: Supplementary Material for: Neuro-Psychological differences between the unilateral and bilateral tinnitus participants with normal hearing.

description: Objective: This paper attempts to describe the neuropsychological differences between subgroups of tinnitus with normal hearing. Materials and Methods: The study compared 150 normal-hearing participants with and without tinnitus in the 18-55 age group. The participants completed nine neuropsychological tests, namely; Reys auditory verbal learning test (RAVLT), Rey complex figure test (RCFT), digit vigilance test (DVT), Verbal N backtest (N Back), Controlled oral word association test (COWA), Animal names test (ANT), Digit Symbol Substitution test (DSST), Wechsler digit span test (DST) and Stroop test. Results: Poor verbal memory was demonstrated by a unilateral tinnitus group (p= 0.0001 for the total RAVLT score, immediate score, delayed recall, hits, and omissions). Significant deficits were observed in working memory functioning by the unilateral and bilateral tinnitus participants (p&lt;0.001) for 1back and two back hit and error scores). In addition, there was a significant impairment in the auditory attention of single-sided tinnitus participants (p &lt;0.03.0.02). Selective attention was affected in bilateral tinnitus participants(p&lt;0.05). Conclusion: Tinnitus, whether unilateral or bilateral, disrupts the working memory. However, the results of RAVLT and DST indicated that unilateral tinnitus showed significant weakness in auditory memory and auditory attention and selective attention deficits were prevalent in bilateral tinnitus. These findings must be considered when planning the therapeutic management of patients with unilateral and bilateral tinnitus.
DOI: 10.6084/m9.figshare.24787530.v1
title: Datasets (Main manuscript)

description: 1) Dataset on the flowering phenology of seventeen herbaceous grassland plant species across the year 2020. The data was collected in the Global Change Experimental Facility (GCEF).2) Dataset with mean values of traits (SLA and vegetative height) derived from the TRY database (Kattge et al., 2020).3-6) Datasets with calculated log response ratios (LRR) (climate response) for all investigated phenological stages (first flowering day (FFD), last flowering day (LFD), flowering duration (FD), peak flowering (Peakfl) and across all investigated species, together with information on functional traits and grassland utilization indicator values.7) Dataset on grassland utilization indicator values (from Briemle et al., 2002) derived by the BiolFlor database (Klotz et al.,2002)8) Dataset for plotting model outputs (linear models) testing the relationship between functional traits and phenological shifts (LRR).9) Metadata file with meta data for all datasets.
DOI: 10.6084/m9.figshare.28246337.v1
title: Supplementary Material for: Prognostic impact of immunophenotypic variation in subcapsular sinus endothelium of sentinel lymph nodes in invasive breast carcinoma

description: Introduction
Several studies demonstrated the de novo-formation of lymphatic vessels in tumor-draining lymph nodes (LN), partly preceding lymphatic metastases. This “lymphovascular niche” supposedly facilitates survival of metastatic tumor cells. This study aims at evaluating the previously observed immunophenotypic variations of subcapsular endothelial cells (SEC) in a larger cohort by software-assisted image analysis.
Methods
Suitable cases with sentinel-LN (SLN) of invasive breast cancer were identified in the Institute of Pathology, corresponding data was extracted. LN of 231 patients were stained for HE, D2-40, CD31 and Prox1. QuPath software was used for assessing the immunohistochemical stained area of endothelial cells of the subcapsular sinus. The Cutoff Finder web application was used for identification of the best cutoff for continuous parameters according to overall survival (OS). Collected data was statistically evaluated for available data.
Results
A larger area of CD31-positive SEC was significantly associated with worse OS (p=0.001), as was a higher proportion of D2-40-stained subcapsular sinus (p=0.045). Larger area of D2-40-/CD31-/Prox1-positive SEC and higher proportion of D2-40 stained subcapsular sinus were independent marker for worse OS in multivariate analysis in the whole cohort, for D2-40- and CD31-positive SECs as well as higher proportion of D2-40-stained sinus including nodal-negative status, respectively.
Conclusion
QuPath-assisted evaluation of immunophenotypic variation in subcapsular sinus endothelium in SLN essentially confirmed and extended our previous findings. Larger positive area of D2-40 and CD31-positive SECs emerged as a strong independent negative prognostic factor, even before evident nodal metastasis. The potential function of alterations in D2-40-/CD31-expression in SECs has yet to be elucidated.
DOI: 10.6084/m9.figshare.28844573.v1
title: Research Project MCS-III (3) (1) (1).pdf

description: IoT-based air monitoring systems use the Internet of Things (IoT) technology to monitor and control air quality in real-time. These systems use a network of sensors and devices to measure pollutants such as carbon monoxide (CO), sulphur dioxide (SO-), nitrogen dioxide (NO-), particulate matter (PM), and ozone (O-).
DOI: 10.6084/m9.figshare.7892843.v2
title: RData file

description: RData file containing all elements to run multi-species and multi-region occupancy model.<br>
DOI: 10.15468/dl.yfpq78
title: Occurrence Download

description: A dataset containing 144996 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Fossil",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 144996 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013128-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.