cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22008/promice/data/ice_discharge/d/v02/z2llav
title: region.nc

description: Regional discharge, coverage, and error. Git hash: ffabc08
DOI: 10.22008/promice/data/ice_discharge/d/v02/az2wdg
title: sector_coverage.csv

description: Sector coverage. Git hash: ffabc08
DOI: 10.22008/promice/data/ice_discharge/d/v02/jpcg05
title: sector_D.csv

description: Sector discharge. Git hash: ffabc08
DOI: 10.22008/promice/data/ice_discharge/d/v02/gmnh5j
title: sector.nc

description: Sector discharge, coverage, and error. Git hash: ffabc08
DOI: 10.22008/promice/data/ice_discharge/d/v02/l3jl0a
title: sector_err.csv

description: Sector error. Git hash: ffabc08
DOI: 10.22008/promice/data/ice_discharge/d/v02/fvqc0p
title: gate_coverage.csv

description: Gate coverage. Git hash: 2c1a5fc
DOI: 10.22008/promice/data/ice_discharge/d/v02/sfnyxx
title: gate_D.csv

description: Gate discharge. Git hash: 2c1a5fc
DOI: 10.22008/promice/data/ice_discharge/d/v02/bxo4r0
title: gate_err.csv

description: Gate errors. Git hash: 2c1a5fc
DOI: 10.22008/promice/data/ice_discharge/d/v02/lsugbh
title: GIS_coverage.csv

description: Greenland coverage. Git hash: 2c1a5fc
DOI: 10.22008/promice/data/ice_discharge/d/v02/x8gl28
title: gate.nc

description: Gate discharge, coverage, error, and metadata. Git hash: 2c1a5fc
DOI: 10.22008/promice/data/ice_discharge/d/v02/3yg1tg
title: GIS_D.csv

description: Greenland discharge. Git hash: 2c1a5fc
DOI: 10.22008/promice/data/ice_discharge/d/v02/kx6v3a
title: GIS_err.csv

description: Greenland error. Git hash: 2c1a5fc
DOI: 10.5061/dryad.70rxwdc14
title: The thermal niche and phylogenetic assembly of evergreen tree metacommunities in a mid-to-upper tropical montane zone

description: Frost and freezing temperatures have posed an obstacle to tropical woody
 evergreen plants over evolutionary timescales. Thus, along tropical
 elevation gradients, frost may influence woody plant community structure
 by filtering out lowland tropical clades, and allowing extra-tropical
 lineages to establish at higher elevations. Here we assess the extent to
 which frost influences the taxonomic and phylogenetic structure of
 naturally-patchy evergreen forests (locally known as shola) along a
 mid-upper montane elevation gradient in the Western Ghats, India.
 Specifically, we examine the role of large-scale macroclimate and factors
 affecting local microclimates, including shola patch size and distance
 from shola edge, in driving shola metacommunity structure. We find that
 the shola metacommunity shows phylogenetic overdispersion with elevation,
 with greater representation of extra-tropical lineages above 2000m, and
 marked turnover in taxonomic composition of shola woody communities near
 the frost-affected forest edge above 2000m, from those below 2000m. Both
 minimum winter temperature and patch size were equally important in
 determining metacommunity structure, with plots inside very large sholas
 dominated by older tropical lineages, with many endemics. Phylogenetic
 overdispersion in the upper montane shola metacommunity thus resulted from
 tropical lineages persisting in the interiors of large closed frost-free
 sholas, where their regeneration niche has been preserved over time.
description: A stratified random sampling design was used to collect shola
 woody vegetation data from 20 x 20 m plots, based on slope, aspect, and
 landscape context. A minimum of four plots were placed within each
 combination of landscape context and topographic class, with the exact
 location of plots determined by accessibility and steepness of terrain. In
 large shola patches (&gt; 60 ha), three transects of plots were placed
 at a minimum of 250 m apart, with a distance of at least 50 m between each
 plot along the transect. All non-climbing woody individuals &gt; 1cm
 diameter were censused within the plots. In addition, the distance to the
 nearest edge of the shola fragment was noted as well as plot elevation. A
 total area of 3.48 ha (87 plots) was censused across
 60km<sup>2</sup> study area loacted in the southern and
 western part of the Upper Nilgiris plateau in south India
 (11.17<sup>o</sup>N, 76.77<sup>o</sup>E and
 11.50<sup>o</sup>N and 76.43<sup>o</sup>E),
 between 1750-2400 m ASL. The presence and abundance of
 each species in each plot was derived from this field dataset, as was
 distance to edge measurements and elevation. Size of the shola patch was
 calculated in QGIS software after digitizing each sampled shola patch
 using 2.5 m resolution QuickBird imagery in Google Earth (www.googleearth.com; Digital Globe Imagery from 2008-2011, accessed Aug 2011).
description: The data files are in .csv format and can be opened in MS Excel
 and in the R statistical software.
DOI: 10.22008/promice/data/ice_discharge/d/v02/e5u9jo
title: GIS.nc

description: Greenland discharge, coverage, and error. Git hash: 2c1a5fc
DOI: 10.22008/promice/data/ice_discharge/d/v02/batdff
title: README.txt

description: README. Git hash: 2c1a5fc
DOI: 10.22008/promice/data/ice_discharge/d/v02/ghoe4j
title: region_coverage.csv

description: Regional coverage. Git hash: 2c1a5fc
DOI: 10.22008/promice/data/ice_discharge/d/v02/ivzpfs
title: region.nc

description: Regional discharge, coverage, and error. Git hash: 2c1a5fc
DOI: 10.22008/promice/data/ice_discharge/d/v02/seowy3
title: region_D.csv

description: Regional discharge. Git hash: 2c1a5fc
DOI: 10.22008/promice/data/ice_discharge/d/v02/yiuszv
title: sector_coverage.csv

description: Sector coverage. Git hash: 2c1a5fc
DOI: 10.22008/promice/data/ice_discharge/d/v02/5vuz39
title: sector_D.csv

description: Sector discharge. Git hash: 2c1a5fc
DOI: 10.22008/promice/data/ice_discharge/d/v02/mwu0kz
title: sector_err.csv

description: Sector error. Git hash: 2c1a5fc
DOI: 10.22008/promice/data/ice_discharge/d/v02/bs0qrw
title: gate_coverage.csv

description: Gate coverage. Git hash: 0b40f64
DOI: 10.22008/promice/data/ice_discharge/d/v02/rag5xq
title: sector.nc

description: Sector discharge, coverage, and error. Git hash: 2c1a5fc
DOI: 10.5061/dryad.pk0p2ngr3
title: Alternative Covid-19 mitigation measures in school classrooms: Analysis using an agent-based model of SARS-CoV-2 transmission

description: The SARS-CoV-2 epidemic continues to have major impacts on children’s
 education, with schools required to implement infection control measures
 that have led to long periods of absence and classroom closures. We have
 developed an agent-based epidemiological model of SARS-CoV-2 transmission
 that allows us to quantify projected infection patterns within primary
 school classrooms, and related uncertainties; the basis of our approach is
 a contact model constructed using random networks, informed by structured
 expert judgment. The effectiveness of mitigation strategies is considered
 in terms of effectiveness at suppressing infection outbreaks and limiting
 pupil absence. Covid-19 infections in schools in the UK in Autumn 2020 are
 re-examined and the model used for forecasting infection levels in autumn
 2021, as the more infectious Delta-variant was emerging and school
 transmission was thought likely to play a major role in an incipient new
 wave of the epidemic. Our results are in good agreement with available
 data and indicate that testing-based surveillance of infections in the
 classroom population with isolation of positive cases is a more effective
 mitigation measure than bubble quarantine both for reducing transmission
 in primary schools and for avoiding pupil absence, even accounting for the
 insensitivity of self-administered tests. Bubble quarantine entails large
 numbers of pupils being absent from school, with only a modest impact on
 classroom infection levels. However, maintaining a reduced contact rate
 within the classroom can have a major beneficial impact on managing
 Covid-19 in school settings.
description: An agent-based stochastic model of SARS-CoV-2 transmission in
 classrooms, developed in Fortran for fast ensemble simulation.
description: The CoMMinS classroom model is written in Fortran, with links to
 Python for file reading and generation of contact network
 diagrams. The code uses:<br>  - Fortran GSL
 libraries for random sampling from distributions
 (https://doku.lrz.de/display/PUBLIC/FGSL+-+A+Fortran+interface+to+the+GNU+Scientific+Library)<br>  - Fortran NetCDF for efficient storage of results (https://docs.unidata.ucar.edu/netcdf-fortran/current/)<br>  - Fortran--Python bindings are provided by ForpY (https://github.com/ylikx/forpy)<br>  - some modules from https://leonfoks.github.io/coretran/index.html Note, the Python code is stored in a separate directory provided as an environment variable called "COVID_SRC" after compilation.<br><br>Requirements:<br>  - Gcc version &gt;=9.4.0<br>  - Python &gt;= 3.9<br>  - Netcdf fortran library<br>  - Fortran gsl library
DOI: 10.22008/promice/data/ice_discharge/d/v02/pe6sdg
title: gate_D.csv

description: Gate discharge. Git hash: 0b40f64
DOI: 10.22008/promice/data/ice_discharge/d/v02/zfbspk
title: gate_err.csv

description: Gate errors. Git hash: 0b40f64
DOI: 10.22008/promice/data/ice_discharge/d/v02/2rzqti
title: gate.nc

description: Gate discharge, coverage, error, and metadata. Git hash: 0b40f64
DOI: 10.22008/promice/data/ice_discharge/d/v02/nu5not
title: GIS_coverage.csv

description: Greenland coverage. Git hash: 0b40f64
DOI: 10.22008/promice/data/ice_discharge/d/v02/rujguu
title: GIS_D.csv

description: Greenland discharge. Git hash: 0b40f64
DOI: 10.22008/promice/data/ice_discharge/d/v02/fdtyrh
title: GIS_err.csv

description: Greenland error. Git hash: 0b40f64
DOI: 10.22008/promice/data/ice_discharge/d/v02/t9u3md
title: GIS.nc

description: Greenland discharge, coverage, and error. Git hash: 0b40f64
DOI: 10.22008/promice/data/ice_discharge/d/v02/yfjaal
title: README.txt

description: README. Git hash: 0b40f64
DOI: 10.5061/dryad.ttdz08m1z
title: Seychelles warblers with silver spoons: juvenile body mass is a lifelong predictor of annual survival, but not annual reproduction or senescence

description: The environment experienced during development, and its impact on
 intrinsic condition, can have lasting outcomes for individual phenotypes
 and could contribute to variation in adult senescence trajectories.
 However, the nature of this relationship in wild populations remains
 uncertain, owing to the difficulties in summarizing natal condition and in
 long-term monitoring of individuals from free-roaming long-lived species.
 Utilizing a closely monitored, closed population of Seychelles warblers
 (Acrocephalus sechellensis), we determine whether juvenile body mass is
 associated with natal socio-environmental factors, specific genetic traits
 linked to fitness in this system, survival to adulthood and
 senescence-related traits. Juveniles born in seasons with higher food
 availability and into smaller natal groups (i.e. fewer competitors) were
 heavier. In contrast, there were no associations between juvenile body
 mass and the genetic traits. Furthermore, size-corrected mass - but not
 separate measures of natal food availability, group size or genetic traits
 - was positively associated with survival to adulthood, suggesting
 juvenile body mass is indicative of natal condition. Heavier juveniles had
 greater body mass and had higher rates of annual survival as adults,
 independent of age. In contrast, there was no association between juvenile
 mass and adult telomere length attrition (a measure of somatic stress) nor
 annual reproduction. These results indicate that juvenile body mass, while
 not associated with senescence trajectories, can influence the likelihood
 of surviving to old age, potentially due to silver-spoon effects. This
 study shows that measures of intrinsic condition in juveniles can provide
 important insights into long-term fitness of individuals in wild
 populations.
description: Please refer to the methods section of the associated manuscript
 for data collection/processing details
DOI: 10.22008/promice/data/ice_discharge/d/v02/o4z9ta
title: region_coverage.csv

description: Regional coverage. Git hash: 0b40f64
DOI: 10.22008/promice/data/ice_discharge/d/v02/zqqbuh
title: region_D.csv

description: Regional discharge. Git hash: 0b40f64
DOI: 10.22008/promice/data/ice_discharge/d/v02/yqnqj0
title: region.nc

description: Regional discharge, coverage, and error. Git hash: 0b40f64
DOI: 10.22008/promice/data/ice_discharge/d/v02/oosyoj
title: sector_coverage.csv

description: Sector coverage. Git hash: 0b40f64
DOI: 10.22008/promice/data/ice_discharge/d/v02/u1y4rx
title: sector_D.csv

description: Sector discharge. Git hash: 0b40f64
DOI: 10.22008/promice/data/ice_discharge/d/v02/bge4ik
title: sector_err.csv

description: Sector error. Git hash: 0b40f64
DOI: 10.22008/promice/data/ice_discharge/d/v02/d5jv5v
title: gate_coverage.csv

description: Gate coverage. Git hash: 9ee1c1a
DOI: 10.22008/promice/data/ice_discharge/d/v02/tnqcpd
title: sector.nc

description: Sector discharge, coverage, and error. Git hash: 0b40f64
DOI: 10.22008/promice/data/ice_discharge/d/v02/cgbcu3
title: gate_D.csv

description: Gate discharge. Git hash: 9ee1c1a
DOI: 10.22008/promice/data/ice_discharge/d/v02/tszzjh
title: gate_err.csv

description: Gate errors. Git hash: 9ee1c1a
DOI: 10.5061/dryad.s4mw6m98j
title: Morphological measurements of two host specialists of the dipteran Tephritis conura, both in sympatry and allopatry

description: Adaptation to new ecological niches is known to spur population
 diversification and may lead to speciation if gene flow is ceased. While
 adaptation to the same ecological niche is expected to be parallel, it is
 more difficult to predict whether selection against maladaptive
 hybridization in secondary sympatry results in parallel divergence also in
 traits that are not directly related to the ecological niches. Such
 parallelisms in response to selection for reproductive isolation can be
 identified through estimating parallelism in reproductive character
 displacement across different zones of secondary contact. Here, we use a
 host shift in the phytophagous peacock fly Tephritis conura, with both
 host races represented in two geographically separate areas East and West
 of the Baltic Sea to investigate convergence in morphological adaptations.
 We asked i) if there are consistent morphological adaptations to a host
 plant shift and ii) if the response to secondary sympatry with the
 alternate host race is parallel across contact zones. We found
 surprisingly low and variable, albeit significant, divergence between host
 races. Only one trait, the length of the female ovipositor, which serves
 an important function in the interaction with the hosts, was consistently
 different between host races. Instead, co-existence with the other host
 race significantly affected the degree of morphological divergence, but
 the divergence was largely driven by different traits in different contact
 zones. Thus, local stochastic fixation or reinforcement could generate
 trait divergence, and additional evidence is needed to conclude whether
 divergence is locally adaptive.
description: The dataset describes morphological measurements of the
 dipteran <em>Tephritis conura</em>. This species has
 specialised to utilise two different host plants (<em>Cirsium
 heterophyllum</em> and <em>C. oleraceum</em>), and
 thereby formed stable host races. Individuals of both host races, both
 collected in sympatry and allopatry from eight different populations in
 northern Europe was measured, after having been hatched in a common lab
 environment. One female and one male from each bud was measured. We took
 magnified photographs of each individual, and of the wings of each
 individual. Measured traits include wing length, wing
 width, wing area, melanised area, melanised ratio and a Procrustes fit of
 landmark data for wing shape (included in the data are the six most
 variable relative warps produced by a PCA of wing shape data). Body length
 and ovipositor length were measured digitally from lateral photographs.
 Wing melanisation was measured using an automated script, which quantified
 how many pixels of the wing was melanised. Wing shape data was produced
 from 15 landmarks on each wing. After a Procrustes fit, six relative warps
 were extracted from the loadings of a principal component analysis. Each
 wing shape principal component in the dataset represents a wing shape
 phenotype.
DOI: 10.22008/promice/data/ice_discharge/d/v02/xyswbw
title: gate.nc

description: Gate discharge, coverage, error, and metadata. Git hash: 9ee1c1a
DOI: 10.22008/promice/data/ice_discharge/d/v02/c45oxa
title: GIS_D.csv

description: Greenland discharge. Git hash: 9ee1c1a
DOI: 10.22008/promice/data/ice_discharge/d/v02/w0f7or
title: GIS_coverage.csv

description: Greenland coverage. Git hash: 9ee1c1a
DOI: 10.22008/promice/data/ice_discharge/d/v02/xslrnq
title: GIS_err.csv

description: Greenland error. Git hash: 9ee1c1a
DOI: 10.5061/dryad.fn2z34txf
title: Concatenated amino acid (AA) phylogenetic dataset of nuclear gene orthologs for Ephydroidea (Diptera)

description: The schizophoran superfamily Ephydroidea (Diptera: Cyclorrhapha) includes
 eight families, ranging from the well-known vinegar flies (Drosophilidae)
 and shore flies (Ephydridae), to several small, relatively unusual groups,
 the phylogenetic placement of which has been particularly challenging for
 systematists. Extraordinary diversity in life histories, feeding habits,
 and morphology are hallmarks of fly biology, and the Ephydroidea are no
 exception. Extreme specialization can lead to “orphaned” taxa with no
 clear evidence for their phylogenetic position. To resolve relationships
 among a diverse sample of Ephydroidea, including the highly modified flies
 in the families Braulidae and Mormotomyiidae, we conducted phylogenomic
 sampling. Using exon capture from Anchored Hybrid Enrichment and
 transcriptomics to obtain 320 orthologous nuclear genes sampled for 32
 species of Ephydroidea and 11 outgroups, we evaluate a new phylogenetic
 hypothesis for representatives of the superfamily. These data strongly
 support monophyly of Ephydroidea with Ephydridae as an early branching
 radiation and the placement of Mormotomyiidae as a family-level lineage
 sister to all remaining families. We confirm the placement of
 Cryptochetidae as a sister taxon to a large clade containing both
 Drosophilidae and Braulidae – the latter a family of honeybee
 ectoparasites. Our results reaffirm that sampling of both taxa and
 characters is critical in hyperdiverse clades and that these factors have
 a major influence on phylogenomic reconstruction of the history of the
 schizophoran fly radiation.
description: These are data obtained by anchored hybrid enrichment using the
 NCSU_Wiegmann Diptera Probes or from transcriptome data available in
 public databases.  Each locus in the concatenated dataset (327 genes) was
 identified as a  single-copy ortholog using the Orthograph program and
 compared against a reference library of brachyceran Diptera orthologs 
 (Brachybase) designed from genomic resources for Brachycera in the OrthoDB
 database.  Each locus partition was separately aligned in
 MAFTT.  
description: Phylogenetic analysis was conducted in IQTREE v1.44 with the
 partition file 'ephy.aa.parts'.
DOI: 10.22008/promice/data/ice_discharge/d/v02/al4yzp
title: GIS.nc

description: Greenland discharge, coverage, and error. Git hash: 9ee1c1a
DOI: 10.22008/promice/data/ice_discharge/d/v02/mosfmv
title: README.txt

description: README. Git hash: 9ee1c1a
DOI: 10.22008/promice/data/ice_discharge/d/v02/8em8nf
title: region_coverage.csv

description: Regional coverage. Git hash: 9ee1c1a
DOI: 10.22008/promice/data/ice_discharge/d/v02/tqyf3v
title: region.nc

description: Regional discharge, coverage, and error. Git hash: 9ee1c1a
DOI: 10.22008/promice/data/ice_discharge/d/v02/wkn1ub
title: region_D.csv

description: Regional discharge. Git hash: 9ee1c1a
DOI: 10.5061/dryad.7h44j0zwx
title: Data from: First-year Acacia seedlings are anisohydric ‘water-spenders’ but differ in their rates of water use

description: Premise of the study: The first-year tree seedling (FYS) life stage may be
 a critical demographic bottleneck in semi-arid, seasonally dry ecosystems
 such as savannas. Given the highly variable water availability and
 potentially strong FYS-grass competition for water here, FYS water-use
 strategies may play a crucial role in FYS establishment and, ultimately,
 tree-grass competition and coexistence. Methods: We examined
 drought responses in FYS of two tree species that are dominant on
 opposite ends of an aridity gradient in Serengeti, Acacia
 (=Vachellia) tortilis and A. robusta. Within a
 glasshouse experiment, gas exchange and whole-plant hydraulic conductance
 (Kplant) were measured while soil water potential (Ψsoil) declined.
 Trajectory of the Ψleaf/Ψsoil relationship during
 drought elucidated the degree of iso/anisohydry. Key results: Both species
 were strongly anisohydric “water-spenders,” allowing rapid wet-season C
 gain after pulses of moisture availability. Despite being equally
 vulnerable to declines in Kplant under severe drought,
 they differed in their rates of water use. A. tortilis, which
 occurs in the more arid regions, initially had greater Kmax,
 transpiration (E), and photosynthesis (Anet) than A. robusta.
 Conclusions: This work demonstrates an important mechanism of FYS
 establishment in savannas: rather than investing in drought tolerance,
 savanna FYS maximize gas exchange during wet periods at the expense of
 desiccation during dry seasons. FYS establishment appears dependent upon
 high C uptake during the pulses of water availability that characterize
 habitats dominated by these species. This study increases our
 understanding of species-scale plant ecophysiology and ecosystem-scale
 patterns of tree-grass coexistence.
DOI: 10.22008/promice/data/ice_discharge/d/v02/pvlc9e
title: sector_coverage.csv

description: Sector coverage. Git hash: 9ee1c1a
DOI: 10.22008/promice/data/ice_discharge/d/v02/rexud2
title: sector_D.csv

description: Sector discharge. Git hash: 9ee1c1a
DOI: 10.22008/promice/data/ice_discharge/d/v02/sdon8q
title: sector_err.csv

description: Sector error. Git hash: 9ee1c1a
DOI: 10.5061/dryad.r7sqv9sfj
title: RNA sequencing for individuals of Daphnia dentifera exposed and unexposed to a fungal pathogen

description: This raw sequencing data provided the foundation for the analysis:
 "Differential gene expression analysis in the aquatic invertebrate,
 Daphnia dentifera in response to fungal pathogen exposure" by Terrill
 et al. In this study, authors infected Daphnia dentifera with a commonly
 occurring fungal pathogen, Metschnikowia bicuspidata, and performed RNA
 extraction at three different time points (2 hours post-exposure, 12 hours
 post-exposure, and 24 hours post-exposure). The data presented here
 include the raw sequencing reads as well as metadata for each sample.
 After a differential gene expression analysis, the study found that genes
 related to cuticle development were upregulated in those samples that were
 exposed to the pathogen when compared to unexposed individuals. 
description: RNA-sequencing data for individuals of
 <em>Daphnia</em> <em>dentifera</em>, exposed and
 unexposed to the fungal pathogen <em>Metschnikowia</em>
 <em>bicuspidata</em>, for differential gene expression analysis. Tissue
 was extracted using whole-bodies and cDNA libraries were prepared for
 sequencing using Illumina's TruSeq Stranded mRNA-seq Sample Prep kit
 and sequenced on a HiSeq 4000 at the University of Illinois at
 Urbana-Champaign, Illinois: USA. Raw fastq files have been demultiplexed
 with bcl2fastq.
DOI: 10.22008/promice/data/ice_discharge/d/v02/l2skcy
title: sector.nc

description: Sector discharge, coverage, and error. Git hash: 9ee1c1a
DOI: 10.22008/promice/data/ice_discharge/d/v02/tilldi
title: README.txt

description: README. Git hash: c66d8d7
DOI: 10.22008/promice/data/ice_discharge/d/v02/v8auf6
title: gate_meta.csv

description: Gate metadata. Git hash: c66d8d7
DOI: 10.22008/promice/data/ice_discharge/d/v02/kvijg6
title: gate_coverage.csv

description: Gate coverage. Git hash: 66fa5db