cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20079434.v2
title: Global dataset of stable isotopes of plant water and its sources

description: <br> This is a global dataset of water isotopic composition of plant water and its sources, and it compiles data from 112 different articles <br> These files contain the data included in this publication: Title: Isotopic offsets between bulk plant water and its sources are larger in cool and wet environments Authors list: Javier de la Casa, Adriá Barbeta, Asun Rodriguez-Uña, Lisa Wingate, Jérôme Ogée and Teresa E. Gimeno. <br> Accepted for publication in Hydrology and Earth System Sciences on the 10th June 2022. For an online discussion on this publication see: https://hess.copernicus.org/preprints/hess-2021-333/ Corresponding author: Javier de la Casa, delacasa.snchz@gmail.com <br> Please, read and cite this publication when using this database and contact the corresponding author for further enquires. <br> It is composed of three different databases. One for isotopic composition of water sources (WATERISOsources), other for the plant water (WATERISOplant) and other for the metadata associated to each publication (WATERISOmeta). <br> <br>
DOI: 10.6084/m9.figshare.28868918.v1
title: Manipulations with the wooden model of the <i>Pteronisculus</i> skull

description: In ray-finned fish, the symplectic together with the palatoquadrate ossification and the hyomandibula forms the suspensorium. However, in paleoniscoids, the suspensorium was not formed, and the symplectic was attached to the lower jaw behind the jaw joint. Modern hypotheses do not take into account certain symplectic morphofunctional features in paleoniscoids. Meanwhile, understanding the biomechanics of the paleoniscoid skull is important for hypothesizing about the evolution of ray-finned fish. Drawing on literature data about the structure of paleoniscoid heads, we conducted a graphical analysis of force distribution in the skull of a basal representative of the genus <i>Pteronisculus</i> during the hyoid retraction and tested it on a wooden skull model. We found previously unrecognized mechanical connection between the expansion of the oropharyngeal cavity and the opening of the mouth. This mechanism may serve as an alternative to the opercular mouth-opening mechanism in modern bony fishes.
DOI: 10.60893/figshare.apl.28887566.v3
title: Clean supplement

description: The detailed derivation of formula 1-2, forward simulation, and data processing methods can be found in the supplementary material.
DOI: 10.17632/cd44yfx6vp
title: Data for: Connectivity and larval dispersal pathways of Panulirus argus in the Gulf of Mexico: a numerical study

description: % Matlab script % Developed by Julio Antonio Lara-Hernandez (julioalh@atmosfera.unam.mx) % and Jorge Zavala-Hidalgo (jzavala@atmosfera.unam.mx). % Ocean-atmosphere interaction group, Center of Atmospheric Sciences, % National Autonomous University of Mexico (UNAM), Mexico. % % This script shows that a Turbulent-Difussion velocity (v') can be % equivalently constructed from random numbers of (1) uniform or (2) normal % distributions. It also shows that by setting a = b/sqrt(dt), the effect of % Turbulent-Difussion remains the same regardless the selected time-step (dt): % % (1) v' = Va * Ru % Where: v' = Turbulent-Difussion velocity % Va = Advective velocity (e.g. velocity of an ocean current) % Ru = Random number of uniform distribution from -a to a % a = b/sqrt(dt) % b = User-defined parameter modulating the degree of Turbulen-Difussion % dt = Time-step defined by the user % % (2) v' = Rn % Where: Rn = Random number of normal (Gaussian) distribution with a mean % equal to zero and a standard deviation std_Rn = Va*a/sqrt(3) % % In the resulting graphs after running the script, the central curve % indicates the mean, the upper curve is the mean+std, and the lower curve % is the mean-std. The overlapping of the curves from both approaches % indicates that they are equivalent. Reproducing the same curves by % considering different time-steps shows that setting a equal to b/sqrt(dt) % works to achieve the same effect of Turbulent-Difussion regardless the % selected time-step.
DOI: 10.17632/p5f6dxzkh5
title: Data for: "The role of the melt aluminum saturation index in controlling gold and molybdenum proportions in porphyry copper deposits: An experimental investigation

description: Raw data for the manuscript by Li et al. (2024) submitted to Geochimica et Cosmochimica Acta as "The role of the melt aluminum saturation index in controlling gold and molybdenum proportions in porphyry copper deposits: An experimental investigation"
DOI: 10.17632/vyy8ttw7n9
title: A distinct innate immune signature marks progression from mild to severe COVID-19

description: Mass cytometry and Olink data generated in the context of the characterization of the innate immune response to SARS-CoV-2 infection in a cohort of 70 covid-19 patients and 22 healthy individual collected in 4 hospital in Zürich (Switzerland) in spring 2020.
DOI: 10.6084/m9.figshare.28824020.v1
title: <b>Comparative Analysis of Flood Risk Modelling Techniques in the Greater Accra Region, Ghana: Multi-Criteria Decision Analysis and Logistic Regression</b>

description: 10 Variable layers used in the various flood modelling methodologies. An R file containing the processing technique used in the Logistic Regression model.
DOI: 10.6084/m9.figshare.3524186.v1
title: Appendix C. A table summarizing general linear model (GLM) results for treatment effects on species richness (SR) in all years, seedling recruitment (2000 only), and community production in response to reduction of vegetative cover (R), fertilizer (F), and seed additions (S).

description: A table summarizing general linear model (GLM) results for treatment effects on species richness (SR) in all years, seedling recruitment (2000 only), and community production in response to reduction of vegetative cover (R), fertilizer (F), and seed additions (S).
DOI: 10.6084/m9.figshare.14461757.v1
title: ecg-polar-h10-set2

description: Single-lead ECG tracings along with heart rate and 3-axis chest actigraphy using a Polar H10 sensor worn with on a Polar Pro chest strap, with data transferred via bluetooth to an Android smartphone (Realme 6i) that serves as a bluetooth receptor unit and data recorder via the Polar Sensor Logger app on Android by Jukka Happonen (Polar developer, this app is unofficial): https://play.google.com/store/apps/details?id=com.j_ware.polarsensorlogger<br>Data was compressed with 7-zip using LZMA2 in Normal compression setting and split into 5GB parts to respect the file size limit of figshare. Total is 3 GB compressed, 20 GB uncompressed.<br>This dataset covers the period from 2021-01-21 to 2021-04-21. There is some overlap with the set1 to ease download, as this set starts at the same period other wearables were finished being ironed out. See other sets for further data.<br>This wearable was only worn when at home.<br>Each file represents one acquisition session, of variable time up to 140h in one session. The acquisition software also split files when the device is temporarily out of reach, so there several files with very few entries, which means the device was barely reachable or went in and out of bluetooth range. These files can be concatenated to study a longer time period. There are 4 types of files: ECG for the raw ECG at 133Hz sampling rate, HR for the heart-rate computed by the proprietary Polar embedded software in the H10 sensor and also the IBI (inter-beats intervals) to ease calculation of HRV (heart rate variability), ACC for the 3-axis (accelerometer = translation axes) chest actigraphy set at 100Hz sampling rate and 4g sampling resolution, and Marker which are manual markers by the operator to mark special temporal events but they were not used for this study so they are either deleted or empty. For the full technical specification of the Polar H10 device, see: https://github.com/polarofficial/polar-ble-sdk/tree/master/technical_documentation
DOI: 10.6084/m9.figshare.25917763.v2
title: VCF file for 45 accessions of the genus <i>Phaseolus</i>: P. <i>. acutifolius (14), P. coccineus (12), P. lunatus (8), P. dumosus (6), P. leptostachyus (2), P. filiformis (2) y P. vulgaris (1)</i>

description: Information on SNP molecular markers for the study of intra- and interspecies genetic diversity of <i>P. coccineus</i>, <i>P. lunatus</i>, <i>P. dumosus</i>, <i>P. acutifolius</i>, <i>P. leptostachyus</i>, <i>P. filiformis</i>, and <i>P. vulgaris</i>.
DOI: 10.6084/m9.figshare.5818134.v1
title: Consent forms and demographic questionnaires

description: Consent forms, demographic questionnaires and public domain release forms in English, German, Greek and Spanish.
DOI: 10.6084/m9.figshare.6993575.v1
title: Supplementary Material for: Obstructive Sleep Apnoea and Aortic Aneurysm: A Nationwide Population-Based Retrospective Study

description: <b><i>Objective:</i></b> To determine whether patients with obstructive sleep apnoea (OSA) have an increased risk of aortic aneurysm (AA). <b><i>Methods:</i></b> The data for the nationwide population-based retrospective cohort study described here were obtained from the Taiwan National Health Insurance Research Database (NHIRD). We selected adult patients who had been newly diagnosed as having OSA and were followed up between 2000 and 2010. We excluded patients who had been diagnosed as having AA before the date of the new OSA diagnosis. The control cohort consisted of individuals who had no OSA history. The patients and the control cohort were selected by 1: 4 matching according to the following baseline variables: sex, age, index year, and comorbidities. The outcome measure was AA diagnosis. <b><i>Results:</i></b> In total, 31,274 patients diagnosed as having OSA were identified. Compared to patients without OSA, they had no significantly discrepant cumulative risk of developing AA in subsequent years (<i>p</i> from log-rank test = 0.442). We used the Cox proportional-hazards regression model, which found that only male sex, older age, diabetes mellitus, chronic obstructive pulmonary disease (COPD), and coronary artery disease were independently associated with AA occurrence among subjects with an OSA diagnosis. OSA was not associated with AA development. On the other hand, in the subgroup of COPD, patients with OSA had a higher incidence of risk of AA than those without OSA. <b><i>Conclusion:</i></b> When compared to those without OSA, patients with OSA do not have an increased AA risk.
DOI: 10.6084/m9.figshare.8081315.v2
title: Temporal clustering of prey in wildlife passages provides no evidence of a prey-trap - Data, meta-data, and code

description: Datasets, meta-data, and code used in publication. <br>Martinig, A. R., M. Riaz, C. C. St. Clair. 2020. Interspecific encounters in wildlife passages: prey may dilute risk of prey-trap by predators. Scientific Reports 10:11489. DOI: 10.1038/s41598-020-67340-8
DOI: 10.6084/m9.figshare.11709600.v1
title: 6-WT-4S,6R-Tetraketide-14p

description: Tetraketide docked in WT ER model
DOI: 10.6084/m9.figshare.14465292.v1
title: Offshore geological storage of hydrogen: Is this our best option to achieve net-zero?: GIS File

description: The main article which describes the data is accepted in ACS Energy Letters: A. Hassanpouryouzband, E. Joonaki, K. Edlmann, and R. S. Haszeldine. 2021. ACS Energy Letters. Offshore geological storage of hydrogen: Is this our best option to achieve net-zero? https://doi.org/10.1021/acsenergylett.1c00845<br>
DOI: 10.6084/m9.figshare.20102681.v3
title: Defeat Recording Data

description: Main Behavior Pickle File: <br> Overall dictionary from (mouse,defeat_day)--&gt;data data.keys() # body_part_tracking, extracted_features, fiber_photometry <br> data['body_part_tracking] is a dictionary from body part to x,y coordinates over time (T frame, 120 Hz) <br> data['extracted_features'] is a 12xT matrix of feature traces (120 Hz) <br> data['fiber_photometry'] is a dictionary from 'fpts' or 'fpnac' to raw GCaMP recordings from the tail striatum or nucleus accumbens respectively (1017 Hz) <br> <br> Model Pickle Files: - 2 sets of random forest classifiers (trained RF model, cutoff for probability of behavior ocurring) dictionary of behavior name: (trained <code><strong>sklearn.ensemble</strong></code><strong>.RandomForestClassifier</strong>, classification probability cutoff) <br> - t-SNE model: dictionary: 'training': features in training set 'projection': <code><strong>sklearn.neural_network</strong></code><strong>.MLPClassifier </strong>maps raw features to t-SNE space 'labeled_map': where clusters are in t-SNE space <br> <br>
DOI: 10.6084/m9.figshare.29174333.v1
title: Behavioral state and stimulus strength regulate the role of somatostatin interneurons in stabilizing network activity

description: We investigated the role of somatostatin-expressing (SST) interneurons in inhibition stabilization within mouse primary visual cortex. By selectively blocking glutamatergic inputs to SST cells, we observed paradoxical facilitation of SST activity with increasing stimulus contrast and arousal—a hallmark of inhibition stabilization. Our computational modeling revealed that higher sensory input and arousal drive the network toward regimes where other interneuron classes cannot maintain stability alone. We demonstrate that SST cells' contribution to cortical processing is state-dependent, becoming increasingly critical as input strength and behavioral arousal increase, thereby enabling stable sensory encoding across diverse contexts.
DOI: 10.6084/m9.figshare.6169619.v1
title: Additional file 1: of Differences in the health transition patterns of migrants and non-migrants aged 50 and older in southern and western Europe (2004â 2015)

description: Complete results, including all steps and the effects of all covariates, as well as the models showing the risk of experiencing transitions leading to attrition (death or loss to follow-up). (XLSX 87Â kb)
DOI: 10.6084/m9.figshare.14442179.v1
title: Korso_cDNA_representative.fa.gz

description: Korso representative cDNA sequences
DOI: 10.6084/m9.figshare.28465118.v2
title: wave height prediction

description: wave height prediction
DOI: 10.6084/m9.figshare.9992579.v1
title: Aligned 5-locus dataset of Inocybe sect. Rimosae s.s. and Inosperma clades

description: This is the aligned, concatenated ITS1–5.8S–ITS2–nrLSU–mtSSU dataset of <i>Inocybe </i>sect. <i>Rimosae </i>s.s. subclade A, used for molecular phylogenetic reconstruction with IQ-TREE under partitioned models.<br><br> <b>New species of <i>Inocybe</i> sect. <i>Rimosae</i> from Pakistan revealed by multi-locus phylogenetic reconstruction</b><b></b> Malka Saba, Danny Haelewaters, Donald H. Pfister, Abdul Nasir Khalid<br> <b>Abstract</b> During fungal surveys between 2012 and 2014 in pine-dominated forests of the western Himalayas in Pakistan, several collections of <i>Inocybe</i> (Agaricales, Inocybaceae) were made. These were documented based on morphological and molecular data. During this work, three new species came to light, which are here formally described as <i>Inocybe brunneoumbonata</i>, <em>I. pinophila,</em> and <em>I. triacicularis</em>. These species are part of sect. <i>Rimosae</i> s.s. and belong to or are closely related to <i>Rimosae</i> s.s. subclade A. Macro- and micro-morphological descriptions, illustrations, and molecular phylogenetic reconstructions of the studied taxa are provided. The new species are differentiated from their close relatives by basidiospore size and coloration of basidiomata. Molecular phylogenetic relationships are inferred using ITS (ITS1–5.8S–ITS2), nrLSU, and mtSSU sequence data. All three newly described taxa likely share an ectomycorrhizal association with trees in the genus <i>Pinus</i>. <b>Keywords</b> 3 new taxa, ectomycorrhizal fungi, Inocybaceae, Pakistan, phylogeny, <i>Pinus roxburghii</i>, taxonomy<br>
DOI: 10.17632/5jhvsy5rr5
title: Altas de riesgo climático de la República Dominicana

description: El Atlas de riesgo climático de la República Dominicana es una herramienta que permite identificar, evaluar y gestionar los riesgos climáticos en el país. El atlas se basa en datos históricos de eventos climáticos, datos de vulnerabilidad y datos de exposición. Los datos se analizan utilizando técnicas estadísticas, geoespaciales y de machine learning. Los resultados del análisis se visualizan en mapas, gráficos y tablas para facilitar su comprensión. Objetivos del atlas El objetivo principal del atlas es contribuir a la gestión del riesgo climático en la República Dominicana. El atlas se puede utilizar para: Identificar los riesgos climáticos más importantes que afectan al país. Evaluar la vulnerabilidad de los sistemas naturales y humanos a los riesgos climáticos. Visualizar los riesgos climáticos para facilitar la toma de decisiones. Elaborar recomendaciones para la mitigación y adaptación al cambio climático.
DOI: 10.6084/m9.figshare.11573499.v1
title: Prisoner's Dilemma data

description: This fileset contains data from the study entitled, "Effects of episodic simulation and gender on cooperative behaviour in the Prisoner’s Dilemma" and submitted to the Journal of Experimental Social Psychology for publication. The study involves an experiment in which 120 undergraduates played the Prisoner's Dilemma game after either imagining helping their game partner in a situation of need (imagine condition) or performing a filler task (words/baseline condition). The gender of participants' game partner (a computer algorithm disguised as a human) was also manipulated. Details about each variable can be found in the pd_vars.txt file.<br>
DOI: 10.6084/m9.figshare.22442785.v4
title: Dataset of networks used in assessing the Bayan algorithm for community detection

description: This dataset contains a wide range of randomly generated networks (random graphs) from a study on community detection. In total there are 1020 network files. This includes 500 ABCD graphs, 500 LFR graphs, 10 Erdos-Renyi graphs, and 10 Barabasi-Albert graphs as described in the article linked below this description. Each network is provided in .gml format.This dataset is provided under a CC BY-NC-SA Creative Commons v 4.0 license (Attribution-NonCommercial-ShareAlike). This means that other individuals may remix, tweak, and build upon these data non-commercially, as long as they provide citations to this data repository (https://doi.org/10.6084/m9.figshare.22442785) and the reference article listed below (http://dx.doi.org/10.48550/arXiv.2209.04562), and license the new creations under the identical terms.For more information about the data, one may refer to the articles below:Aref, Samin, Hriday Chheda, and Mahdi Mostajabdaveh. "The Bayan Algorithm: Detecting Communities in Networks Through Exact and Approximate Optimization of Modularity." <i>arXiv preprint arXiv:2209.04562</i> (2022).Aref, S., Mostajabdaveh, M., Chheda, H. (2023). Heuristic Modularity Maximization Algorithms for Community Detection Rarely Return an Optimal Partition or Anything Similar. In: Mikyška, J., de Mulatier, C., Paszynski, M., Krzhizhanovskaya, V.V., Dongarra, J.J., Sloot, P.M. (eds) Computational Science – ICCS 2023. ICCS 2023. Lecture Notes in Computer Science, vol 10476. Springer, Cham. https://doi.org/10.1007/978-3-031-36027-5_48
DOI: 10.6084/m9.figshare.28401143.v1
title: Supplementary Figures

description: Supplementary information for the following reference: https://doi.org/10.1152/ajprenal.00059.2025
DOI: 10.6084/m9.figshare.13739233.v2
title: Motion Capture Data and Camera Parameters

description: All Rat 7M motion capture data and camera parameters.<br>Each file contains the motion capture traces in a variable called 'mocap' and camera calibration parameters in a variable called 'cameras'. In addition to the calibration parameters for each camera, 'cameras' also contains a variable, 'frames', which gives the video frame number (for each camera) corresponding to a given sample of motion capture data. <br><br>.mat files are readable in Matlab or using scipy.io.loadmat() in python/scipy.<br>
DOI: 10.6084/m9.figshare.25778184.v2
title: <b>Chromosome-level genome assembly of </b><b><i>Dracocephalum rupestre</i></b><b> Hance</b>

description: <i>Dracocephalum rupestre</i> Hance is China's traditional herbal medicine in the family Labiatae with numerous health benefits, including anti-inflammatory, antiviral and anti-tumor activities. However, the genus <i>Dracocephalum</i> has no reference genome currently, which restricts the research on the breeding, cultivation and exploration of medicinal properties in <i>D.</i><i> </i><i>rupestre</i>. Thus, we present the first high-quality chromosome-level genome assembly of D. <i>rupestre</i> using a combination of Pacbio HiFi sequencing and Hi-C scaffolding technologies. The final genome was 435.45 Mb with a contig N50 of 49.83 Mb and a scaffold N50 of 59.06 Mb. The assembled sequences were anchored to 7 chromosomes with an integration efficiency of 96.96%. Furthermore, we predicted 25,865 protein-coding genes, 98.23% of which were functionally annotated. These results offer valuable resources for understanding the genetic basis of the unique phenotypes of <i>D. rupestre</i> and will facilitate further study of the functional genomic of this species.
DOI: 10.6084/m9.figshare.6834461.v1
title: Supplementary Material for: Potential Role of Gr-1<sup>+</sup> CD8<sup>+</sup> T Lymphocytes as a Source of Interferon-γ and M1/M2 Polarization during the Acute Phase of Murine <b><i>Legionella pneumophila</i></b> Pneumonia

description: In this study, we analyzed interferon (IFN)-γ-producing cells and M1/M2 macrophage polarization in <i>Legionella pneumophila</i> pneumonia following anti-Gr-1 antibody treatment. Anti-Gr-1 treatment induced an M1-to-M2 shift of macrophage subtypes in the lungs and weakly in the peripheral blood, which was associated with increased mortality in legionella-infected mice. CD8<sup>+</sup> T lymphocytes and natural killer cells were the dominant sources of IFN-γ in the acute phase, and anti-Gr-1 treatment reduced the number of IFN-γ-producing CD8<sup>+</sup> T lymphocytes. In the CD3-gated population, most Gr-1-positive cells were CD8<sup>+</sup> T lymphocytes in the lungs and lymph nodes (LNs) of infected mice. Additionally, the number of IFN-γ-producing Gr-1<sup>+</sup> CD8<sup>+</sup> T lymphocytes in the lungs and LNs increased 2 and 4 days after <i>L. pneumophila</i> infection, with anti-Gr-1 treatment attenuating these populations. Antibody staining revealed that Gr-1<sup>+</sup> CD8<sup>+</sup> T lymphocytes were Ly6C-positive cells rather than Ly6G, a phenotype regarded as memory type cells. Furthermore, the adoptive transfer of Gr-1<sup>+</sup> CD8<sup>+</sup> T lymphocytes induced increases in IFN-γ, M1 shifting and reduced bacterial number in the <i>Legionella</i> pneumonia model. These data identified Ly6C<sup>+</sup> CD8<sup>+</sup> T lymphocytes as a source of IFN-γ in innate immunity and partially associated with reduced IFN-γ production, M2 polarization, and high mortality in anti-Gr-1 antibody-treated mice with <i>L. pneumophila</i> pneumonia.