cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8940917.v1
title: Additional file 3: of Functional DNA methylation signatures for autism spectrum disorder genomic risk loci: 16p11.2 deletions and CHD8 variants

description: Table S1. Demographic information for heterogeneous ASD cases and age- and sex-matched neurotypical controls. Table S2. Number of probes removed and remaining for analysis following quality control. Table S3. List of overlapping DMRs for 16p11.2del. Table S4. List of overlapping DMRs for CHD8+/−. Table S5. List of samples extracted from GEO database and respective 16p11.2del and CHD8+/− signature scores for specificity analysis. All sample data are from blood and from individuals with known ages &lt; 50 years old. Table S6. List of significant (q &lt; 0.05, |Δβ| ≥ 5%) sites in 16p11.2del DNAm signature. Table S7. List of significant (q &lt; 0.05, |Δβ| ≥ 5%) sites in CHD8+/− DNAm signature. Table S8. GO Biological Process enrichment terms following GREAT enrichment analysis of differentially methylated genes in 16p11.2del DNAm signature. Table S9. GO Biological Process enrichment terms following GREAT enrichment analysis of differentially methylated genes in CHD8+/− DNAm signature. (XLSX 156 kb)
DOI: 10.6084/m9.figshare.8940902
title: Additional file 11: of GC content of vertebrate exome landscapes reveal areas of accelerated protein evolution

description: Table S2. Transcript ID and GC content of all 55 used species. (XLSX 14581 kb)
DOI: 10.6084/m9.figshare.8940902.v1
title: Additional file 11: of GC content of vertebrate exome landscapes reveal areas of accelerated protein evolution

description: Table S2. Transcript ID and GC content of all 55 used species. (XLSX 14581 kb)
DOI: 10.6084/m9.figshare.8940881
title: Additional file 5: of The uncertainty with using risk prediction models for individual decisionÂ making: an exemplar cohort study examining the prediction of cardiovascular disease in English primary care

description: Code for analysis. Contains code to run the analysis. README.docx file has instructions on how to set up data before running analysis. (7Z 59 kb)
DOI: 10.6084/m9.figshare.8940878
title: Additional file 2: of Practice of over-the-counter dispensary of antibiotics for childhood illnesses in Addis Ababa, Ethiopia: a simulated patient encounter study

description: Raw data. (SAV 4 kb)
DOI: 10.6084/m9.figshare.8940878.v1
title: Additional file 2: of Practice of over-the-counter dispensary of antibiotics for childhood illnesses in Addis Ababa, Ethiopia: a simulated patient encounter study

description: Raw data. (SAV 4 kb)
DOI: 10.6084/m9.figshare.8940881.v1
title: Additional file 5: of The uncertainty with using risk prediction models for individual decisionÂ making: an exemplar cohort study examining the prediction of cardiovascular disease in English primary care

description: Code for analysis. Contains code to run the analysis. README.docx file has instructions on how to set up data before running analysis. (7Z 59 kb)
DOI: 10.6084/m9.figshare.8940839
title: Additional file 5: of Mapping non-host resistance to the stem rust pathogen in an interspecific barberry hybrid

description: MAKER features and detailed functional annotation for the seven candidate genes. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8940836
title: Additional file 4: of Mapping non-host resistance to the stem rust pathogen in an interspecific barberry hybrid

description: Linkage map of B. vulgaris accession â Wagon Hillâ and associated information. (XLSX 251 kb)
DOI: 10.6084/m9.figshare.8940839.v1
title: Additional file 5: of Mapping non-host resistance to the stem rust pathogen in an interspecific barberry hybrid

description: MAKER features and detailed functional annotation for the seven candidate genes. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8940836.v1
title: Additional file 4: of Mapping non-host resistance to the stem rust pathogen in an interspecific barberry hybrid

description: Linkage map of B. vulgaris accession â Wagon Hillâ and associated information. (XLSX 251 kb)
DOI: 10.6084/m9.figshare.8940830
title: Additional file 3: of Mapping non-host resistance to the stem rust pathogen in an interspecific barberry hybrid

description: Linkage map of B. thunbergii accession â BtUCONN1â and associated information. (XLSX 412 kb)
DOI: 10.6084/m9.figshare.8940830.v1
title: Additional file 3: of Mapping non-host resistance to the stem rust pathogen in an interspecific barberry hybrid

description: Linkage map of B. thunbergii accession â BtUCONN1â and associated information. (XLSX 412 kb)
DOI: 10.6084/m9.figshare.8940818
title: Additional file 2 of A multivariate Poisson-log normal mixture model for clustering transcriptome sequencing data

description: GO analysis of different models. GO enrichment analysis results for the different models selected for cranberry RNA-seq dataset. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8940812
title: Additional file 1: of Mapping non-host resistance to the stem rust pathogen in an interspecific barberry hybrid

description: Sequencing details of B. thunbergii accession ‘BtUCONN1’, B. vulgaris accession ‘Wagon Hill’, and the interspecific F1 (B. ×ottawensis) mapping population used in this study. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.8940818.v1
title: Additional file 2 of A multivariate Poisson-log normal mixture model for clustering transcriptome sequencing data

description: GO analysis of different models. GO enrichment analysis results for the different models selected for cranberry RNA-seq dataset. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8940812.v1
title: Additional file 1: of Mapping non-host resistance to the stem rust pathogen in an interspecific barberry hybrid

description: Sequencing details of B. thunbergii accession ‘BtUCONN1’, B. vulgaris accession ‘Wagon Hill’, and the interspecific F1 (B. ×ottawensis) mapping population used in this study. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.8940797
title: Additional file 2 of Adaptive propensity score procedure improves matching in prospective observational trials

description: Time point of Interim Analysis - Large Sample Size. Figure S5 Mean matching rate for different time points of the interim analysis (ncontrol=500). Figure S6 Power for different time points of the interim analysis (ncontrol=500). Figure S7 Mean sample size in treated group for different time points of the interim analysis (ncontrol=500). Figure S8 Type I error for different time points of the interim analysis (ncontrol=500). (ZIP 17.6 kb)
DOI: 10.6084/m9.figshare.8940797.v1
title: Additional file 2 of Adaptive propensity score procedure improves matching in prospective observational trials

description: Time point of Interim Analysis - Large Sample Size. Figure S5 Mean matching rate for different time points of the interim analysis (ncontrol=500). Figure S6 Power for different time points of the interim analysis (ncontrol=500). Figure S7 Mean sample size in treated group for different time points of the interim analysis (ncontrol=500). Figure S8 Type I error for different time points of the interim analysis (ncontrol=500). (ZIP 17.6 kb)
DOI: 10.6084/m9.figshare.8940782
title: Additional file 3: of Regulation of terpenoid biosynthesis by miRNA in Persicaria minor induced by Fusarium oxysporum

description: Spearman coefficients for miRNA-metabolite and mRNA-metabolite. Positive values indicate positive correlations, whereas negative values indicate negative correlations. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.8940788
title: Additional file 1 of Adaptive propensity score procedure improves matching in prospective observational trials

description: Time point of Interim Analysis - Small Sample Size. Figure S1 Mean matching rate for different time points of the interim analysis (ncontrol=50). Figure S2 Power for different time points of the interim analysis (ncontrol=50). Figure S3 Mean sample size in treated group for different time points of the interim analysis (ncontrol=50). Figure S4 Type I error for different time points of the interim analysis (ncontrol=50). (ZIP 17.9 kb)
DOI: 10.6084/m9.figshare.8940788.v1
title: Additional file 1 of Adaptive propensity score procedure improves matching in prospective observational trials

description: Time point of Interim Analysis - Small Sample Size. Figure S1 Mean matching rate for different time points of the interim analysis (ncontrol=50). Figure S2 Power for different time points of the interim analysis (ncontrol=50). Figure S3 Mean sample size in treated group for different time points of the interim analysis (ncontrol=50). Figure S4 Type I error for different time points of the interim analysis (ncontrol=50). (ZIP 17.9 kb)
DOI: 10.6084/m9.figshare.8940782.v1
title: Additional file 3: of Regulation of terpenoid biosynthesis by miRNA in Persicaria minor induced by Fusarium oxysporum

description: Spearman coefficients for miRNA-metabolite and mRNA-metabolite. Positive values indicate positive correlations, whereas negative values indicate negative correlations. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.8940767
title: Additional file 1: of Regulation of terpenoid biosynthesis by miRNA in Persicaria minor induced by Fusarium oxysporum

description: SPME GC-MS data from the inoculation test. These data show the effect of F. oxysporum treatment on terpenoid content in P. minor plants at 0, 3, 6, and 9 dpi. (CSV 1 kb)
DOI: 10.6084/m9.figshare.8940767.v1
title: Additional file 1: of Regulation of terpenoid biosynthesis by miRNA in Persicaria minor induced by Fusarium oxysporum

description: SPME GC-MS data from the inoculation test. These data show the effect of F. oxysporum treatment on terpenoid content in P. minor plants at 0, 3, 6, and 9 dpi. (CSV 1 kb)
DOI: 10.5281/zenodo.4002965
title: Supplementary Material - Maritime Cargo Prioritisation during a prolonged pandemic lockdown using an integrated TOPSIS-Knapsack technique

description: Supplementary Material - Maritime Cargo Prioritisation during a prolonged pandemic lockdown using an integrated TOPSIS-Knapsack technique: A Case Study on Small Island Developing States – the Rodrigues Island Results and Sensitivity analysis
DOI: 10.6084/m9.figshare.8940719
title: Additional file 1: of Side lying during nebulisation can significantly improve apical deposition in healthy adults and adults with mild cystic fibrosis lung disease: a randomised crossover trial

description: Individual participant data (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8940719.v1
title: Additional file 1: of Side lying during nebulisation can significantly improve apical deposition in healthy adults and adults with mild cystic fibrosis lung disease: a randomised crossover trial

description: Individual participant data (XLSX 18 kb)
DOI: 10.5281/zenodo.4002964
title: Supplementary Material - Maritime Cargo Prioritisation during a prolonged pandemic lockdown using an integrated TOPSIS-Knapsack technique

description: Supplementary Material - Maritime Cargo Prioritisation during a prolonged pandemic lockdown using an integrated TOPSIS-Knapsack technique: A Case Study on Small Island Developing States – the Rodrigues Island Results and Sensitivity analysis
DOI: 10.6084/m9.figshare.8940713
title: Additional file 2: of Genome-wide association analysis for Î˛-hydroxybutyrate concentration in Milk in Holstein dairy cattle

description: Excel file describing gene ontology biological process terms (GO terms) enriched among GWAS results using SNP2GO enrichment analysis for subclinical ketosis in first lactation (SCK1) and subclinical ketosis in later lactations (SCK2) (XLSX 24 kb)
DOI: 10.6084/m9.figshare.8940707
title: Additional file 1: of Genome-wide association analysis for β-hydroxybutyrate concentration in Milk in Holstein dairy cattle

description: Excel file describing highly significant SNPs (genome-wise FDR
DOI: 10.6084/m9.figshare.8940707.v1
title: Additional file 1: of Genome-wide association analysis for β-hydroxybutyrate concentration in Milk in Holstein dairy cattle

description: Excel file describing highly significant SNPs (genome-wise FDR
DOI: 10.6084/m9.figshare.8940713.v1
title: Additional file 2: of Genome-wide association analysis for Î˛-hydroxybutyrate concentration in Milk in Holstein dairy cattle

description: Excel file describing gene ontology biological process terms (GO terms) enriched among GWAS results using SNP2GO enrichment analysis for subclinical ketosis in first lactation (SCK1) and subclinical ketosis in later lactations (SCK2) (XLSX 24 kb)
DOI: 10.6084/m9.figshare.8940638
title: Additional file 2: of Clinical long-time course, novel mutations and genotype-phenotype correlation in a cohort of 27 families with POMT1-related disorders

description: In silico analysis of novel POMT1 mutations. This file shows the result of the in silico analysis of pathogenicity for all novel POMT1 mutations identified in this study. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8940647
title: MOESM1 of Lipid metabolism impairment in patients with sepsis secondary to hospital acquired pneumonia, a proteomic analysis

description: Additional file 1. Proteomics Quantification - Raw and processed data.
DOI: 10.6084/m9.figshare.8940638.v1
title: Additional file 2: of Clinical long-time course, novel mutations and genotype-phenotype correlation in a cohort of 27 families with POMT1-related disorders

description: In silico analysis of novel POMT1 mutations. This file shows the result of the in silico analysis of pathogenicity for all novel POMT1 mutations identified in this study. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8940647.v1
title: MOESM1 of Lipid metabolism impairment in patients with sepsis secondary to hospital acquired pneumonia, a proteomic analysis

description: Additional file 1. Proteomics Quantification - Raw and processed data.
DOI: 10.6084/m9.figshare.8940635
title: Additional file 1: of Clinical long-time course, novel mutations and genotype-phenotype correlation in a cohort of 27 families with POMT1-related disorders

description: List of all mutations in POMT1. This file lists all causative mutations identified to date in the POMT1 gene. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.8940509
title: grid.16753.36

description: Network Graphs for institution grid.16753.36 created for "What Does a University Look Like?" poster
DOI: 10.6084/m9.figshare.8940635.v1
title: Additional file 1: of Clinical long-time course, novel mutations and genotype-phenotype correlation in a cohort of 27 families with POMT1-related disorders

description: List of all mutations in POMT1. This file lists all causative mutations identified to date in the POMT1 gene. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.8940404.v1
title: Nature Commun_19-01185A_Source data.xlsx

description: Source data for the paper titled "Asymmetric catalysis mediated by a mirror symmetry-broken helical nanoribbon".
DOI: 10.6084/m9.figshare.8940395
title: GFF file of the repeat-masked Isatis indigotica genome

description: GFF file of the repeat-masked genome
DOI: 10.6084/m9.figshare.8940383
title: Gff3 file of high-confidence genes with alternatively splicing in Isatis indigotica

description: Gff3 file of high-confidence genes with alternatively splicing in Isatis indigotica
DOI: 10.6084/m9.figshare.8940389
title: Gff3 file of high-confidence genes without alternatively splicing in Isatis indigotica

description: Gff3 file of high-confidence genes without alternatively splicing in Isatis indigotica
DOI: 10.6084/m9.figshare.8940377
title: The chromosome-scale genome assembly of Isatis indigotica

description: The chromosome-scale genome assembly of Isatis indigotica
DOI: 10.6084/m9.figshare.8940305
title: VOC pattern recognition of lung cancer: a comparative evaluation of different dog- and eNose-based strategies using different sampling materials

description: <b>Background:</b> It has been reported that canine scent tests offer the possibility to screen for cancer. Assuming that breath samples can be collected with carrier materials, we tested the practicability of different carrier materials to be presented to dogs and validated and compared results with an electronic nose (eNose). Moreover, we hypothesized that cancer detection ability of dogs differs according to their working experience. <b>Methods:</b> In a methodological approach, two dog teams participated, one using experienced working dogs and the other ordinary household dogs to find the most qualified dogs and training method. To find best carrier material for breath sampling we compared charcoal containing glass tubes and fleece masks. In a second validating part, experienced working dogs were trained with improved training strategies. For breath sampling, two different, previously successfully tested fleece-based carrier materials were used: one was used with the dog team and both materials were compared with eNose. <b>Results:</b> In the methodological approach, it turned out that the charcoal-based sampling strategy qualified not sufficiently for VOC-detection. Moreover, we could determine that using experienced working dogs provided several advantages. Overall results of dogs in the validating part regarding specificity were 83%, regarding sensitivity 56%, but with great variability among dogs. Using eNose for breath analysis collected with both fleece carrier materials, specificity was 97% and sensitivity 89–100%. <b>Conclusion:</b> Our data confirmed that the diagnostic accuracy of dogs depended on the type of dog training and on the carrier materials. A comparison of breath samples analysis with an eNose achieved better results for both, sensitivity and specificity than for dogs. The use of fleece masks or fleeces in glass tubes as a sampling material can be recommended as successful VOC carriers, encouraging their use for clinical screenings.
DOI: 10.6084/m9.figshare.8940305.v2
title: VOC pattern recognition of lung cancer: a comparative evaluation of different dog- and eNose-based strategies using different sampling materials

description: <b>Background:</b> It has been reported that canine scent tests offer the possibility to screen for cancer. Assuming that breath samples can be collected with carrier materials, we tested the practicability of different carrier materials to be presented to dogs and validated and compared results with an electronic nose (eNose). Moreover, we hypothesized that cancer detection ability of dogs differs according to their working experience. <b>Methods:</b> In a methodological approach, two dog teams participated, one using experienced working dogs and the other ordinary household dogs to find the most qualified dogs and training method. To find best carrier material for breath sampling we compared charcoal containing glass tubes and fleece masks. In a second validating part, experienced working dogs were trained with improved training strategies. For breath sampling, two different, previously successfully tested fleece-based carrier materials were used: one was used with the dog team and both materials were compared with eNose. <b>Results:</b> In the methodological approach, it turned out that the charcoal-based sampling strategy qualified not sufficiently for VOC-detection. Moreover, we could determine that using experienced working dogs provided several advantages. Overall results of dogs in the validating part regarding specificity were 83%, regarding sensitivity 56%, but with great variability among dogs. Using eNose for breath analysis collected with both fleece carrier materials, specificity was 97% and sensitivity 89–100%. <b>Conclusion:</b> Our data confirmed that the diagnostic accuracy of dogs depended on the type of dog training and on the carrier materials. A comparison of breath samples analysis with an eNose achieved better results for both, sensitivity and specificity than for dogs. The use of fleece masks or fleeces in glass tubes as a sampling material can be recommended as successful VOC carriers, encouraging their use for clinical screenings.
DOI: 10.6084/m9.figshare.8940290
title: Antibiotic DATA.ods

description: DATA ON ANTIBIOTIC USE IN A LARGE URBAN TERTIARY HOSPITAL IN FREETOWN SIERRA LEONE
DOI: 10.6084/m9.figshare.8940305.v1
title: VOC pattern recognition of lung cancer: a comparative evaluation of different dog- and eNose-based strategies using different sampling materials

description: <b>Background:</b> It has been reported that canine scent tests offer the possibility to screen for cancer. Assuming that breath samples can be collected with carrier materials, we tested the practicability of different carrier materials to be presented to dogs and validated and compared results with an electronic nose (eNose). Moreover, we hypothesized that cancer detection ability of dogs differs according to their working experience. <b>Methods:</b> In a methodological approach, two dog teams participated, one using experienced working dogs and the other ordinary household dogs to find the most qualified dogs and training method. To find best carrier material for breath sampling we compared charcoal containing glass tubes and fleece masks. In a second validating part, experienced working dogs were trained with improved training strategies. For breath sampling, two different, previously successfully tested fleece-based carrier materials were used: one was used with the dog team and both materials were compared with eNose. <b>Results:</b> In the methodological approach, it turned out that the charcoal-based sampling strategy qualified not sufficiently for VOC-detection. Moreover, we could determine that using experienced working dogs provided several advantages. Overall results of dogs in the validating part regarding specificity were 83%, regarding sensitivity 56%, but with great variability among dogs. Using eNose for breath analysis collected with both fleece carrier materials, specificity was 97% and sensitivity 89–100%. <b>Conclusion:</b> Our data confirmed that the diagnostic accuracy of dogs depended on the type of dog training and on the carrier materials. A comparison of breath samples analysis with an eNose achieved better results for both, sensitivity and specificity than for dogs. The use of fleece masks or fleeces in glass tubes as a sampling material can be recommended as successful VOC carriers, encouraging their use for clinical screenings.
DOI: 10.6084/m9.figshare.8940257
title: Improving grain yield, stress-resilience, and quality of bread wheat using large-scale genomics

description: Genotyping data of CIMMYT's wheat breeding lines<br>
DOI: 10.6084/m9.figshare.8940260
title: A limnological assessment of the diverse waterscape in the Cordillera Vilcanota, Peruvian Andes

description: The Cordillera Vilcanota in the Cusco region of Peru is experiencing dramatic environmental changes due to recent warming. An understudied component of this mountain range is the diverse waterscape, which serves as a vital water source to cities and communities downstream and is critical to supporting the region’s rich biodiversity. A survey of 19 sites comprising lakes, ponds, proglacial systems, and a glacial meltwater stream produced 3 main findings. First, the study sites recorded large gradients in key limnological variables including pH, specific conductivity, nutrients, and dissolved organic carbon within a relatively small area (&lt;800 km<sup>2</sup>). Second, concentrations of some metals were unexpectedly high, exceeding guidelines for the protection of aquatic life in about one-third of the study sites. Third, temperature data recorded over 1 year showed that the lakes were generally isothermal with only short periods of weak thermal stratification. Most of the limnological variability was linked to the size of the waterbody (i.e., lake or pond) and whether or not the site is connected to a glacial watershed. These baseline data are critical to assessing the limnological response to ongoing climate changes and future stressors such as mining operations and the ever-increasing demand for water.