cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2k0zdz
title: CCDC 2354431: Experimental Crystal Structure Determination

description: Related Article: Muhammad Arif, Xu Liu, Zijian Li, Hangwei Jia, Yansheng Jiang, Zhihua Yang, Xueling Hou, Shilie Pan
|2025|Adv. Opt. Mater.|13|2402327|doi:10.1002/adom.202402327
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k0zf0
title: CCDC 2354432: Experimental Crystal Structure Determination

description: Related Article: Muhammad Arif, Xu Liu, Zijian Li, Hangwei Jia, Yansheng Jiang, Zhihua Yang, Xueling Hou, Shilie Pan
|2025|Adv. Opt. Mater.|13|2402327|doi:10.1002/adom.202402327
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k0zg1
title: CCDC 2354433: Experimental Crystal Structure Determination

description: Related Article: Muhammad Arif, Xu Liu, Zijian Li, Hangwei Jia, Yansheng Jiang, Zhihua Yang, Xueling Hou, Shilie Pan
|2025|Adv. Opt. Mater.|13|2402327|doi:10.1002/adom.202402327
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.12jm63z2r
title: Dataset for: Spawning fish maintain trophic synchrony across time and space beyond thermal drivers

description: Increasing ocean temperature will speed up physiological rates of
 ectotherms. In fish, this is suggested to cause earlier spawning, due to
 faster oocyte growth rates, causing spawning time to potentially become
 decoupled to the timing of the offspring’s food resources. A phenomenom
 referred to as trophic asynchrony. We used biological data, including body
 length, otolith information, and gonad developmental stages collected from
 &gt; 125,000 individual Northeast Arctic cod (Gadus morhua) sampled
 between 59 and 73 °N in 1980-2019. Combined with experimental data of
 oocyte growth rates, our analysis shows that cod spawned progressively
 earlier by about a week per decade, partly due to ocean warming. It also
 appears that spawning times vary by more than 40 days, depending on year
 and spawning location. The significant plasticity in spawning time seems
 to be fine-tuned to the local phytoplankton spring bloom phenology. This
 ability to partly overcome thermal drivers could allow individuals to
 phenologically modulate their spawning time to maximize fitness by closely
 tracking local environmental conditions important for offspring survival.
 This finding highlights a new dimension for trophic match-mismatch and
 should be an important consideration in models used to predict phenology
 dynamics in a warmer climate.
description: ## Variable explanations | Name | Description | | ---- | ----------- | |
 Year | year of sample | | DOY | day of year. DOY=1 is Jan 1st | | Sex |
 sex | | Age | age, years, classified from otolith reading | | Length |
 body length, cm | | Stage | gonad stage classified by visual inspection |
 | Lat | latitude, decimal degrees North rounded to nearest 0.001 degrees |
 | Lon | longitude, decimal degrees East rounded to nearest 0.001 degrees |
 | Y-UTM | latitudinal UTM coordinates (zone 33) rounded to nearest 100 m |
 | X-UTM | longitudinal UTM coordinates (zone 33),rounded to nearest 100 m
 | | Gear | type of fishing gear used | | Sampling | sampling
 program/scheme | NOTE: sampling locations are rounded to nearest 0.001
 degree, or 100 m as per recommendations for Category 4 species (Chapman,
 2020). Chapman AD (2020) Current Best Practices for Generalizing Sensitive
 Species Occurrence Data. Copenhagen: GBIF Secretariat.
 https://doi.org/10.15468/doc-5jp4-5g10.
DOI: 10.5517/ccdc.csd.cc2k0zh2
title: CCDC 2354434: Experimental Crystal Structure Determination

description: Related Article: Muhammad Arif, Xu Liu, Zijian Li, Hangwei Jia, Yansheng Jiang, Zhihua Yang, Xueling Hou, Shilie Pan|2025|CSD Communication|||
description: Related Article: Muhammad Arif, Xu Liu, Zijian Li, Hangwei Jia, Yansheng Jiang, Zhihua Yang, Xueling Hou, Shilie Pan
|2025|Adv. Opt. Mater.|13|2402327|doi:10.1002/adom.202402327
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k0zj3
title: CCDC 2354435: Experimental Crystal Structure Determination

description: Related Article: Muhammad Arif, Xu Liu, Zijian Li, Hangwei Jia, Yansheng Jiang, Zhihua Yang, Xueling Hou, Shilie Pan
|2025|Adv. Opt. Mater.|13|2402327|doi:10.1002/adom.202402327
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k0zk4
title: CCDC 2354436: Experimental Crystal Structure Determination

description: Related Article: Muhammad Arif, Xu Liu, Zijian Li, Hangwei Jia, Yansheng Jiang, Zhihua Yang, Xueling Hou, Shilie Pan
|2025|Adv. Opt. Mater.|13|2402327|doi:10.1002/adom.202402327
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k0zl5
title: CCDC 2354437: Experimental Crystal Structure Determination

description: Related Article: Muhammad Arif, Xu Liu, Zijian Li, Hangwei Jia, Yansheng Jiang, Zhihua Yang, Xueling Hou, Shilie Pan|2025|CSD Communication|||
description: Related Article: Muhammad Arif, Xu Liu, Zijian Li, Hangwei Jia, Yansheng Jiang, Zhihua Yang, Xueling Hou, Shilie Pan
|2025|Adv. Opt. Mater.|13|2402327|doi:10.1002/adom.202402327
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ks0bq
title: CCDC 2376563: Experimental Crystal Structure Determination

description: Related Article: Madison I. Bardot, Cody W. Weyhrich, Zixiao Shi, Michael Traxler, Charlotte L. Stern, Jinlei Cui, David A. Muller, Matthew L. Becker, William R. Dichtel|2025|Science|387|264|doi:10.1126/science.ads4968
description: Related Article: Madison I Bardot|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ks0cr
title: CCDC 2376564: Experimental Crystal Structure Determination

description: Related Article: Madison I. Bardot, Cody W. Weyhrich, Zixiao Shi, Michael Traxler, Charlotte L. Stern, Jinlei Cui, David A. Muller, Matthew L. Becker, William R. Dichtel|2025|Science|387|264|doi:10.1126/science.ads4968
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.931zcrjqb
title: Evaluation of archival HIV DNA in brain and lymphoid tissues

description: HIV reservoirs persist in anatomic compartments despite antiretroviral
 therapy (ART). Characterizing HIV reservoirs in central nervous system
 (CNS) and other tissues is crucial to inform cure strategies. We evaluated
 paired autopsy brain – frontal cortex (FC), occipital cortex (OCC), basal
 ganglia (BG) – and peripheral lymphoid tissues from 63 people with HIV.
 Participants passed away while virally suppressed on ART and without
 evidence of CNS opportunistic disease. We quantified HIV DNA and, from a
 subset of 14 participants, we obtained full-length HIV-envelope (FL
 HIV-env) sequences. We detected HIV DNA (gag) in most brain (65.1%) and
 all lymphoid tissues. Lymphoid tissues had higher HIV DNA levels compared
 to brain (p&lt;0.01). Levels of HIV gag between BG and FC were similar
 (p&gt;0.2), while OCC had the lowest levels (p=0.01). Females had
 higher HIV DNA levels in tissues than males (gag: p=0.03; 2-LTR, p=0.05),
 suggesting possible sex-associated mechanisms for HIV reservoir
 persistence. Most FL HIV-env sequences (n=143) were intact, while 42 were
 defective. Clonal sequences were found in eight participants; one
 participant had the same clonal defective sequences in brain and spleen,
 suggestive of cell migration. From 10 donors with paired brain and
 lymphoid sequences, we observed evidence of compartmentalized sequences in
 two participants. Our data contribute to the idea that the brain is a site
 for HIV reservoirs during ART where compartmentalized proviral populations
 may occur in a subset of people. Future studies accessing FL HIV-provirus
 and replication competence in vitro are needed to further evaluate the HIV
 reservoirs' composition in tissues.
description: To evaluate genetic composition and relationships of HIV
 provirus, we performed single-genome amplification (SGA) coupled with
 PacBio sequencing to obtain full-length (FL) HIV envelope sequences across
 14 participants and the following tissues: - Frontal
 cortex (FC, n= 9) - Occipital cortex (OCC, n=
 5) - lymph node (LN, n= 5) - Spleen
 (SP, n= 8)
DOI: 10.5517/ccdc.csd.cc2ks0ds
title: CCDC 2376565: Experimental Crystal Structure Determination

description: Related Article: Madison I. Bardot, Cody W. Weyhrich, Zixiao Shi, Michael Traxler, Charlotte L. Stern, Jinlei Cui, David A. Muller, Matthew L. Becker, William R. Dichtel|2025|Science|387|264|doi:10.1126/science.ads4968
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l36hf
title: CCDC 2386364: Experimental Crystal Structure Determination

description: Related Article: Jie Li, Yongli Zhang, Juan Xu, Wen Jiang, Zhehui Weng, Xiangguang Li, Yanhua Yang, Shulin Gao|2025|Tetrahedron|171|134427|doi:10.1016/j.tet.2024.134427
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l36jg
title: CCDC 2386365: Experimental Crystal Structure Determination

description: Related Article: Jie Li, Yongli Zhang, Juan Xu, Wen Jiang, Zhehui Weng, Xiangguang Li, Yanhua Yang, Shulin Gao|2025|Tetrahedron|171|134427|doi:10.1016/j.tet.2024.134427
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l36kh
title: CCDC 2386366: Experimental Crystal Structure Determination

description: Related Article: Jie Li, Yongli Zhang, Juan Xu, Wen Jiang, Zhehui Weng, Xiangguang Li, Yanhua Yang, Shulin Gao|2025|Tetrahedron|171|134427|doi:10.1016/j.tet.2024.134427
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2llr21
title: CCDC 2401293: Experimental Crystal Structure Determination

description: Related Article: Tomohiro Seki, Rintaro Ishikawa|2024|Chem.-Eur.J.|30|e202404241|doi:10.1002/chem.202404241
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2llr32
title: CCDC 2401294: Experimental Crystal Structure Determination

description: Related Article: Tomohiro Seki, Rintaro Ishikawa|2024|Chem.-Eur.J.|30|e202404241|doi:10.1002/chem.202404241
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.r2280gbhm
title: Data for: Aggregation in an heterospecific population of blowfly larvae: social behaviour is impacted by species-specific thermal requirements and settlement order

description: Larvae of several blow fly species grow on carcasses and actively
 aggregate together. They face harsh developmental conditions resulting in
 a strong pressure to reduce development time: this is achieved either
 through thermoregulation or aggregation. We investigate how these two
 developmental strategies are modulated within heterospecific groups. In
 the first experiment, larvae of two species with different thermal
 requirements were deposited simultaneously on a thermal gradient. This
 resulted in the formation of two monospecific groups, each located at the
 species-specific thermal preferendum. However, when Calliphora vomitoria
 (Linnaeus) larvae were placed first, the later coming Lucilia sericata
 (Meigen) larvae attracted the whole group to its own thermal preferendum.
 In the reverse experiment, a half of the replicates resulted in single
 dense heterospecific groups observed at temperatures ranging from C.
 vicina to L. sericata preferendum. The other half of the replicates
 resulted in loose groups spread out on the thermal gradient. These results
 highlight the emergence of collective decisions ranging from thermal
 optimization to heterospecific aggregation at suboptimal temperatures.
 They demonstrate that species settlement order strongly affects
 self-organization processes and mixed-species group formation. We conclude
 that thermal optimization and heterospecific niche construction are two
 developmental strategies of carrion fly larvae.
DOI: 10.5061/dryad.gf1vhhmtj
title: Pedigree and phenotypic variables used for estimation of heritability of sand lizard badge size and condition

description: Sexual selection on fitness-determining traits should theoretically erode
 genetic variance and lead to low heritability. However, many sexually
 selected traits maintain significant phenotypic and additive genetic
 variance, with explanations for this “lek paradox” including genic capture
 due to condition-dependence, and breaks on directional selection due to
 environmental sources of variance including maternal effects. Here we
 investigate genetic and environmental sources of variance in the
 intrasexually selected green badge of the sand lizard (Lacerta agilis).
 The badge functions as a cue to male fighting ability in this species, and
 male-male interactions determine mate acquisition. Using animal models on
 a pedigree including three generations of males measured over an extensive
 nine year field study, we partition phenotypic variance in both badge size
 and body condition into additive genetic, maternal, and permanent
 environmental effects experienced by an individual over its lifespan.
 Heritability of badge size was 0.33 with a significant estimate of
 underlying additive genetic variance. Body condition was strongly
 environmentally determined in this species and does not show either
 significant additive genetic variance or heritability. Neither badge size
 nor body condition were responsive to maternal effects. We propose that
 the lack of additive genetic variance and heritability of body condition
 makes it unlikely that genic capture mechanisms maintains additive genetic
 variance for badge size. That said, genic capture was originally proposed
 for male traits under female choice, not agonistic selection. If
 developmental pathways generating variance in body condition, and/or the
 covarying secondary sex trait, differ between inter- and intrasexual
 selection, or the rate at which their additive genetic variance or
 covariance is depleted, future work may show whether genic capture is
 largely restricted to intersexual selection processes.
DOI: 10.5061/dryad.bcc2fqzhj
title: Data for: Prevalent fingerprint of marine macroalgae in Arctic surface sediments

description: Macroalgal forests export much of their production, partly supporting food
 webs and carbon stocks beyond their habitat, but evidence of their
 contribution in sediment carbon stocks is poor. We test the hypothesis
 that macroalgae contribute to carbon stocks in arctic marine sediments. We
 used environmental DNA (eDNA) fingerprinting on a large-scale set of
 surface sediment samples from Greenland and Svalbard. We evaluated eDNA
 results by comparing with traditional survey and tracer methods. The
 eDNA-based survey identified macroalgae in 94% of the sediment samples
 covering shallow nearshore areas to 1,460 m depth and 350 km offshore,
 with highest sequence abundance nearshore and with dominance of brown
 macroalgae. Overall, the eDNA results reflected the potential source
 communities of macroalgae and eelgrass assessed by traditional surveys,
 with the most abundant orders being common among different methods. A
 stable isotope analysis showed a considerable contribution from macroalgae
 in sediments although with high uncertainty, highlighting eDNA as a great
 improvement and supplement for documenting macroalgae as a contributor to
 sediment carbon stocks. Conclusively, we provide evidence for a prevalent
 contribution of macroalgal forests in arctic surface sediments, nearshore
 as well as offshore, identifying brown algae as main contributors.
description: Metabarcoding reads and taxonomy assignment of marine sediment
 from Greenland and Svalbard. Isotopic compostion of
 marine sediment from Greenland and Svalbard and end-members.
 Underwater video transect data, species number and coverage of
 macroalgae in Kronprinsens Ejland.
DOI: 10.5061/dryad.jh9w0vtg7
title: Data from: Parasites, depredators, and limited resources as potential drivers of winter mortality of feral honeybee colonies in German forests

description: Wild honeybees (Apis mellifera) are considered extinct in most parts of
 Europe. The likely causes of their decline include increased parasite
 burden, lack of high-quality nesting sites and associated depredation
 pressure, and food scarcity. In Germany, feral honeybees still colonize
 managed forests, but their survival rate is too low to maintain viable
 populations. Based on colony observations collected during a monitoring
 study, data on parasite prevalence, experiments on nest depredation, and
 analyses of land cover maps, we explored whether parasite pressure,
 depredation or expected landscape-level food availability explain feral
 colony winter mortality. Considering the colony-level occurrence of 18
 microparasites in the previous summer, colonies that died did not have a
 higher parasite burden than colonies that survived. Camera traps installed
 at cavity trees revealed that four woodpecker species, great tits, and
 pine martens act as nest depredators. In a depredator exclusion
 experiment, the winter survival rate of colonies in cavities with
 protected entrances was 50% higher than that of colonies with
 unmanipulated entrances. Landscapes surrounding surviving colonies
 contained on average 6.4 percentage points more cropland than landscapes
 surrounding dying colonies, with cropland being known to
 disproportionately provide forage for bees in our study system. We
 conclude that the lack of spacious but well-protected nesting cavities and
 the shortage of food are currently more important than parasites in
 limiting populations of wild-living honeybees in German forests.
 Increasing the density and diversity of large tree cavities and promoting
 bee forage plants in forests will probably promote wild-living honeybees
 despite parasite pressure.
description: Information on the methods used to obtain the data is provided in
 the associated article and in the README file
description: Requires programs that read csv files and mp4 files.