cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25919/5e670b1621b21
title: Supplementary material for article: X chromosome variants are associated with male fertility traits in two bovine populations.

description: X chromosome variants are associated with male fertility traits in two bovine populations. Fortes, Porto-Neto et al. 2020. Twenty-five phenotypes were measured as indicators of bull fertility (1099 Brahman and 1719 Tropical Composite bulls). Measurements included sperm morphology, scrotal circumference, and sperm chromatin phenotypes such as DNA fragmentation and protamine deficiency. We estimated the heritability of these phenotypes and carried genome-wide association studies (GWAS) within breed, using the bovine high-density chip, to detect quantitative trait loci (QTL). Our analyses suggested that both sperm DNA fragmentation and sperm protamine deficiency are heritable (h2 ranging from 0.10 to 0.22). To confirm these first estimates of heritability further studies on sperm chromatin traits, with larger datasets are desirable. Our GWAS identified QTL for bull fertility traits, based on at least five polymorphisms (P &lt; 10-8) for each QTL. Most of the significant polymorphisms detected in both breeds were on the X chromosome. The QTL were breed-specific, but for some traits, a closer inspection of GWAS results revealed suggestive SNP associations (P &lt; 10-7) in both breeds. For example, the QTL for inhibin in Braham could be relevant to Tropical Composites too (many polymorphisms reached P &lt; 10-7 in the same region). The QTL for sperm midpiece morphological abnormalities on X (QTL peak at 4.92 Mb, P &lt; 10-17) is an example of a breed-specific QTL, supported by several significant SNPs (P &lt; 10-8) in Brahman, but absent in Tropical Composites. The reported GWAS results add evidence to the mammalian specialization of the X chromosome, which during evolution has accumulated genes linked to spermatogenesis. Some of the polymorphisms on X were associated to more than one genetically correlated trait (correlations ranged from 0.33 to 0.51). Correlations and shared polymorphism associations support the hypothesis that these phenotypes have the same underlying cause, i.e. defective spermatogenesis. Genetic improvement for bull fertility is possible through genomic selection, which is likely more accurate if the QTL on X are considered in the predictions. Polymorphisms associated with male fertility accumulate on X in cattle, as in humans and mice, suggesting specialization of this chromosome.
DOI: 10.5281/zenodo.3951781
title: Dataset for "Intraspecies diversity reveals a subset of highly variable plant immune receptors and predicts their binding sites"

description: Datasets for preprint (https://doi.org/10.1101/2020.07.10.190785) entitled: "Intraspecies diversity reveals a subset of highly variable plant immune receptors and predicts their binding sites" Contains: - All data files for scripts quoted in the preprint and deposited at https://github.com/krasileva-group/hvNLR - Clade Membership Tables - Clade Alignment Files - Clade Trees - Excel files for Figure S1, Figure S2, and Table 1
DOI: 10.5281/zenodo.3951780
title: Dataset for "Intraspecies diversity reveals a subset of highly variable plant immune receptors and predicts their binding sites"

description: Datasets for preprint (https://doi.org/10.1101/2020.07.10.190785) entitled: "Intraspecies diversity reveals a subset of highly variable plant immune receptors and predicts their binding sites" Contains: - All data files for scripts quoted in the preprint and deposited at https://github.com/krasileva-group/hvNLR - Clade Membership Tables - Clade Alignment Files - Clade Trees - Excel files for Figure S1, Figure S2, and Table 1
DOI: 10.17632/97fdffrpjh.1
title: Engineering Large, Anatomically Shaped Osteochondral Constructs with Robust Interfacial Shear Properties

description: Raw and analyzed data for manuscript entitled, "Engineering Large, Anatomically Shaped Osteochondral Constructs with Robust Interfacial Shear Properties."
DOI: 10.17632/24kkg2hctg.3
title: EDXRF Raw data of Sonora obsidian

description: 566 geochemical raw data, corresponding to 133 specimens of geological and archaeological obsidian artifacts mostly, including flaked and ground stone, were determined by an X-Ray Fluorescence XL3t series NITON Analyzer from Thermo Fisher Scientific with support of the software Thermo Scientific™ Niton Data Transfer (NDT™). The analysis had an experimental stage to generate a final analytical protocol, based in a repetition of at least 3 analyzes per obsidian sample, procuring 120 counts per second, under the SOIL or TestAllGeo condition programs of Niton. Table 1. Geochemical selected data of geological and archaeological obsidian specimens analyzed from Sonora, Mexico. See description and localization of the sites and regions in [1]. Figure 1. Analytical process concept map of the geological and archaeological specimens of obsidian from Sonora, Mexico. Figure 2. Graphical representation of the concentration and types of geological and archaeological specimens of obsidian from Sonora, Mexico, analyzed by the dispersive-energy XRF technique (Table 1).
DOI: 10.17632/t493bphkh9.2
title: Data used for studying the variability of internal tides in the Andaman Sea

description: The following datasets are used for studying the variability of internal tides in the Andaman Sea: 1. In-situ observations collected from BD12 buoy. 2. Barotropic tide extracted from TPXO9.2 at BD12 (10.5 N, 94 E). 3. Altimeter data from Global Ocean Gridded L4 Sea Surface Heights and Derived Variables Reprocessed - Metadata provided by E.U. Copernicus Marine Service Information.
DOI: 10.17632/zvxbkdp9rx.1
title: Data used for studying the variability of internal tides in the Andaman Sea

description: The following datasets are used for studying the variability of internal tides in the Andaman Sea: 1. In-situ observations collected from BD12 buoy. 2. Barotropic tide extracted from TPXO9.2 at BD12 (10.5 N, 94 E). 3. Altimeter data from Global Ocean Gridded L4 Sea Surface Heights and Derived Variables Reprocessed - Metadata provided by E.U. Copernicus Marine Service Information.
DOI: 10.17632/kjjrrxddbr.2
title: Dataset on thermal properties, sound reductions, TVOC emissions, and costs of envelope components for prefabricated buildings in Australia

description: The data included in the dataset are related to prefabricated building components and their specifications. The specification provided are component type, material, thickness, density, thermal conductivity, specific heat, sound reduction index, total volatile organic compounds (TVOC) emissions and costs in various locations of Australia. The components that are included in this dataset are wall cladding, wall core, interior wall lining, insulation, roof cladding, floor covers and glazing. The authors attempted to cover most of the available component types and their available thicknesses. However, the authors acknowledge that due customisability of these products, other variations of the materials and their dimensions may have not been mentioned in the dataset. For some materials the specifications related to certain properties could net be accessed. Therefore, this dataset is designed to be open for updates and further development in the future. The dataset has been used in sets of building envelope design optimisation practices as input parameters.
DOI: 10.17632/hjx9jfyg46.1
title: Data Raw solar radiation in Colombia

description: The data obtained by these stations correspond to measurements from 1993 to 2013 allowed the parameters estimation of the total, direct and diffuse solar radiation for each department, by mean of the Bird & Hulstrom model, which provided numerical analysis. In addition, five climatological scenarios that could occur using these data were calculated.
DOI: 10.17632/t2kr5b4965.2
title: Database, weights and biases

description: Database of stacking fault energies in austenitic stainless steels alloys and neural network weights and biases. SFE values extracted from: Toshio, Y., Ken, S., Suguru, O., Atsushi H. The Effect of Chemical Composition and Heat Treatment Conditions on Stacking Fault Energy for Fe-Cr-Ni Austenitic Stainless Steel. Metall Mater Trans A, 44 (2013) 5884.
DOI: 10.17632/8k56shfmtc.1
title: Data for: 3654804

description: The Thyroid Patent Dataset was aggregated to contribute the first empirical analysis for patents relating to the thyroid gland’s functionality in the Hypothalamic-Pituitary-Thyroid Axis hormonal control loop. The total Thyroid Patent Dataset currently contains data for 627 patents, and is an iteratively evolving, dynamic software.
DOI: 10.17632/s8cgvhj9wz.1
title: Datasets for validity of a vertical drain system as a lumped model

description: The dual-porosity medium includes the natural/irregular and the artificial/regular (figure 1), and latter is applied more and more in our engineering practice, e.g. a vertical drain system. Figure 2 shows that the structure of the drain system and their terminology. Based on heat-conduction theory, the lumped model was applied to a derivation process in order to acquire a quasi-thermodynamics solution involving some parameters such as Biot number (BiV) and Fourier number (FoV). The universality of the solution make it also applicable to the dual-porosity medium problem. An analogy graph to the vertical drain system was shown in Figure 3. In order to further analysis, the deconstruction of the vertical drain system is performed to divide the system into both parts of an external convective environment (drain wells) and an internal conductive medium (soil matrix) as shown in figure 4. The effective permeability coefficient keff(s), relevant to the drainage behavior of external expel facility, was derived and analyzed based on the graph of deconstruction (figure 5a). Comparing it with the equivalent permeability coefficient keq, which is represented the hydraulic conductive behavior of internal soil matrix, was performed. The convergent relationship between both of permeability coefficients was evaluated through the ratio of keff(s) and keq. A further analysis was carried out to the equivalent permeability keq under consideration of the effects of curvature and divergence, respectively, as shown in figure 6. Figure 7 shows the variation of BiV number with drain spacing ratio n-value to indicate the validity of a vertical drain system as a lumped model. All of above data were calculated through software of Matlab R2015a before they were made the series of graphs. A series of discussion was performed to demonstrate graphically the dissipation process of excess pore pressure of a drain well solved by analytical solution (figure 8) and a comparison between analytical solution and numerical was given in figure 9. Finally, a numerical simulation (figures 10 and 11) by use of FLAC3D5.0 software was carried out for visualizing the process of excess pore pressure dissipation better. The raw data for all above figures produced by aid of calculation software are listed in the dataset specified in the next section of this article. For convenient indexing, they are named in the form of ×××.data_for_fig.number with the ＊.csv file type.
DOI: 10.17632/s8cgvhj9wz.2
title: Datasets for validity of a vertical drain system as a lumped model

description: The dual-porosity medium includes the natural/irregular and the artificial/regular (figure 1), and latter is applied more and more in our engineering practice, e.g. a vertical drain system. Figure 2 shows that the structure of the drain system and their terminology. Based on heat-conduction theory, the lumped model was applied to a derivation process in order to acquire a quasi-thermodynamics solution involving some parameters such as Biot number (BiV) and Fourier number (FoV). The universality of the solution make it also applicable to the dual-porosity medium problem. An analogy graph to the vertical drain system was shown in Figure 3. In order to further analysis, the deconstruction of the vertical drain system is performed to divide the system into both parts of an external convective environment (drain wells) and an internal conductive medium (soil matrix) as shown in figure 4. The effective permeability coefficient keff(s), relevant to the drainage behavior of external expel facility, was derived and analyzed based on the graph of deconstruction (figure 5a). Comparing it with the equivalent permeability coefficient keq, which is represented the hydraulic conductive behavior of internal soil matrix, was performed. The convergent relationship between both of permeability coefficients was evaluated through the ratio of keff(s) and keq. A further analysis was carried out to the equivalent permeability keq under consideration of the effects of curvature and divergence, respectively, as shown in figure 6. Figure 7 shows the variation of BiV number with drain spacing ratio n-value to indicate the validity of a vertical drain system as a lumped model. All of above data were calculated through software of Matlab R2015a before they were made the series of graphs. A series of discussion was performed to demonstrate graphically the dissipation process of excess pore pressure of a drain well solved by analytical solution (figure 8) and a comparison between analytical solution and numerical was given in figure 9. Finally, a numerical simulation (figures 10 and 11) by use of FLAC3D5.0 software was carried out for visualizing the process of excess pore pressure dissipation better. The raw data for all above figures produced by aid of calculation software are listed in the dataset specified in the next section of this article. For convenient indexing, they are named in the form of ×××.data_for_fig.number with the ＊.csv file type.
DOI: 10.17632/b3h99pwybf.1
title: The expert-level distinction of systemic sclerosis from hand photographs using the deep convolutional neural network

description: Supplement Table 1. The diseases types of patients included in this study. Supplement Figure 1. Photography equipment and hand photographs. Photographs of the patient's hands were taken using the imaging equipment set up in the room dedicated to photography, with a constant light source, camera settings, and distance between the hand and camera (A). We took four hand photographs: palms of right hands (B), palms of left hands (C), dorsum of right hands (D), and dorsum of left hands (E) by each patient. Photographs of representative SSc patients were shown. Supplement Figure 2. The architecture of the CNN. The architecture of the CNN developed in this study was shown. The CNN was built in an Nvidia V100 environment, using Tensorflow 1.13.2 and Keras 2.2.4 as frameworks. Each of palm and dorsal of hand photographs obtained from the patients was randomly and evenly divided into four groups. Three of these groups were used to build and train the CNN. The remaining one group was used to compare the SSc distinction performance of SSc specialists with the CNN after training.
DOI: 10.17632/8v8p7prn54.1
title: Dataset and analysis conducted for the study: Anxiety after applying the Objective Structured Clinical Evaluation-OSCE: pilot test in colombian medical students

description: This is the dataset and anlysis conducted for the study entitled "Anxiety after applying the Objective Structured Clinical Evaluation-OSCE: pilot test in colombian medical students".
DOI: 10.17632/xkfjrgf535.4
title: esNotch 2019 Nov

description: 2020-7-18: Updated with sequence files. Raw data for a publication in comms bio (COMMSBIO-19-1429B) http://doi.org/10.1038/s42003-020-0848-x
DOI: 10.17632/3zf6zn9ng6.1
title: Common musculoskeletal problems faced by college-going students and professionals owing to work from home during COVID-19 lockdown and awareness of physiotherapy among them.

description: Background: Outbreak of Corona virus (COVID-19) pandemic, government of India announced a nationwide lock down. Thus, Students and working professionals were compelled to work from home, acquiring poor posture and prolonged working hours leading to several musculoskeletal problems with various associated symptoms. Objective: The objective of present study is determining the effects of work from home, their working hours and predominantly attained posture on their musculoskeletal health and broadly to approximate the awareness regarding need and importance of physiotherapy among them. Method and Materials: This study is a cross-sectional study. 320 college going individuals and work professionals of age group between 17 years and 30 years participated in an online survey with their voluntary consent. The questionnaire was directed using a link shared on social media applications and collected responses of each participant and were analyzed by using Google Form and IBM SPSS Statistics version 26 was used to determine the normality. Result: Out of 320 participants, 41.9% and 43.1% suffered from neck pain and back pain respectively, out of which 59.7% and 46.7% participant’s symptoms were lock down specific for neck pain and low back pain respectively i.e. either originated or aggravated during the period of lockdown. Participants acquiring sitting posture were suspected to have more prevalent neck pain (57.5%) and low back pain (53.1%) during the period of lock down, followed by lying (31.3% and 34.4%) and reclining (11.3% and 12.5%) for neck pain and low back pain respectively. 66.4% of the participants experienced headache associated with their neck pain i.e. Cervicogenic headache (CGH). 32.8% and 34.% of the participants experiencing pain, also experienced radiating symptoms in upper and lower extremities respectively. Median of the visual analogue pain scale for neck pain and low back pain came out to be 5.00 (3.00-6.00) and 5.00 (4.00-7.00) respectively and physical activity per week of the 320 individuals came out to be 4:15:00 hours (1:00:00 hour-12:00:00hours). 89.7% of the total participants were aware about the physiotherapy and 27.8% claimed that their condition demands physiotherapy assistance by professionals. Conclusion: The present study concludes a common trend of long hours of sitting and lack of physical activity in students and working professionals during this lockdown period, resulted in acute pain in the neck and back region or had worsened the symptoms. Keywords: Coronavirus infections, Low Back Pain, Neck Pain, Cervicogenic Pain
DOI: 10.17632/fsydyc9x76.1
title: Data for 'Blockchain in the Indian service industry'

description: The data pertains to a study conducted in 2019 on the blockchain perception in SCM context in the Indian service industry
DOI: 10.17632/vy6vmj462d.1
title: All food products sold within the Perm municipal districts

description: A dataset in xlsx format contains values for the total volume (thousands of rubles) of all food products sold by municipal districts. The first column shows the names of municipal districts in the Perm region. The following columns show the indicator values for the years (2009-2018).
DOI: 10.17632/6dyf9fgksd.1
title: Data on effects of different anesthetics on vital signs of patients undergoing bronchoscopy

description: Systolic blood pressure, diastolic blood pressure, mean arterial pressure and heart rate of bronchoscopy patients were recorded before anesthesia, at the beginning of operation, 15 minutes after the operation and at the end of anesthesia. SPSS20.0 software was used for statistical analysis. Univariate analysis of variance (AVOVA) was used to compare the general situation of patients between groups. The comparison of systolic blood pressure, diastolic blood pressure, mean arterial pressure and heart rate at each time point was performed by single variable analysis of variance (AVOVA), P &lt; 0.05 was statistically significant. These data reflect the change trend of vital signs after using different anesthetic drugs. It can provide reference for anesthesiologists in the face of different basic conditions of patients when choosing narcotic drugs.
DOI: 10.21227/pkqt-9s53
title: Analyzing Android Taint Analysis Tools: FlowDroid, Amandroid, and DroidSafe

description: Numerous static taint analysis techniques have recently been proposed for identifying information flows in mobile applications. These techniques are often optimized and evaluated on a set of synthetic benchmarks, which makes the comparison results difficult to generalize. Moreover, the techniques are commonly compared under different configuration setups, rendering the comparisons inaccurate. In this paper, we provide a large, controlled, and independent comparison of the three most prominent static taint analysis tools: FlowDroid, Amandroid, and DroidSafe. We align the configuration setup for the tools and evaluate them on both a set of common benchmarks and on real applications from the Google Play app store. We compare the results of our analysis to the results reported in previous studies, identify main reasons for inaccuracy in existing tools, and provide suggestions for future research.
DOI: 10.21227/55q6-ff84
title: Analyzing Android Taint Analysis Tools: FlowDroid, Amandroid, and DroidSafe

description: Numerous static taint analysis techniques have recently been proposed for identifying information flows in mobile applications. These techniques are often optimized and evaluated on a set of synthetic benchmarks, which makes the comparison results difficult to generalize. Moreover, the techniques are commonly compared under different configuration setups, rendering the comparisons inaccurate. In this paper, we provide a large, controlled, and independent comparison of the three most prominent static taint analysis tools: FlowDroid, Amandroid, and DroidSafe. We align the configuration setup for the tools and evaluate them on both a set of common benchmarks and on real applications from the Google Play app store. We compare the results of our analysis to the results reported in previous studies, identify main reasons for inaccuracy in existing tools, and provide suggestions for future research.
DOI: 10.21227/afs8-yf24
title: Analyzing Android Taint Analysis Tools

description: This is a dataset for testing purposes.
DOI: 10.7910/dvn/wjof7n/dfm6ka
title: Supplementary File One.docx

description: :unav
DOI: 10.7910/dvn/wjof7n/7mzemk
title: NMurunga_Rotarix_MetaAnalysis_Readme.txt

description: :unav
DOI: 10.17632/s9sww4k99d.1
title: Supplementary data for "Identification of potential inhibitors targeting BRAF-V600E mutant melanoma cells"
DOI: 10.17632/p4tbspt8fs.1
title: Dataset for: Evolution of Mining Employment during the Resource Boom and Bust Cycle in Australia

description: Dataset to investigate the mining boom and bust cycle in Australia.
DOI: 10.17632/7v6rzdst99.2
title: Sign Language Interpretation (SLI) in COVID-19 Messaging in LMICs

description: This folder contains primary data for Sign Language Interpretation (SLI) collected from various web sources. The scope of the data collection includes electronically and publicly available government press conferences and press briefings for COVID-19 issued during February 28 to May 26, 2020, as COVID-19 cases spread from Wuhan, China to other countries across the globe. This folder also includes the R-code for replicating the spatial graph and the processed SLI data used for the code.
DOI: 10.17632/26w5t96ccx.1
title: raw_data_materials_characterization

description: These are the raw data for the results presented in the "New refractory high entropy phases found in (AlCr)TiZrNb, (AlCr)TiNbMo, (AlCr)TiNbHf, (AlCr)TiMoHf and (AlCr)NbMoHf alloys." pending paper draft.