cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7897988.v1
title: gVCF_HG03294

description: 1000 Genomes gVCF mapped to hs37d5 for HG03294. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.5129452.v1
title: Supplementary Material for: <b><i>FTO</i></b> Genotype Interacts with Improvement in Aerobic Fitness on Body Weight Loss During Lifestyle Intervention

description: <b><i>Objective:</i></b> Not every participant responds with a comparable body weight loss to lifestyle intervention, despite the same compliance. Genetic factors may explain parts of this difference. Variation in fat mass and obesity-associated gene (<i>FTO</i>) is the strongest common genetic determinant of body weight. The aim of the present study was to evaluate the impact of <i>FTO </i>genotype differences in the link between improvement of fitness and reduction of body weight during a lifestyle intervention. <b><i>Methods:</i></b> We genotyped 292 healthy subjects for <i>FTO </i>rs8050136. Participants underwent a 9-month lifestyle intervention. Before and after intervention, aerobic fitness was tested by bicycle (VO<sub>2</sub>max) and treadmill spiroergometry (individual anaerobic threshold (IAT), subgroup of N = 192). <b><i>Results:</i></b> Participants lost body weight (p &lt; 0.0001) independent of <i>FTO</i> genotype (p = 0.5). There was a significant correlation between improvement in VO<sub>2</sub>max and decrease in body weight (p &lt; 0.0001). <i>FTO</i> genotype interacted with this relationship (p = 0.0042 for VO<sub>2</sub>max, p = 0.0049 for IAT). When stratifying the cohort according to their improvement in VO<sub>2</sub>max, <i>FTO</i> obesity-risk A-allele carriers in the higher quartiles of improvement in fitness lost significantly less body weight. <b><i>Conclusions:</i></b> Our data reveal that genetic variation in <i>FTO</i> impacts on body weight reduction during lifestyle intervention only in subjects with marked improvement in aerobic fitness.
DOI: 10.6084/m9.figshare.25971811.v1
title: Data on species abundance of mangrove macrobenthos.xlsx

description: The abundance code for each species in natural restoration (NR) and artificial restoration (AR), Dongzhaigang Bay
DOI: 10.6084/m9.figshare.17959258.v1
title: EEG raw dataset2

description: EEG raw dataset in brainvision format. Can be imported to EEGLAB. splitted into 7 subsets due to the limitation on upload size in figshare
DOI: 10.6084/m9.figshare.28843931.v2
title: Inter-Site Correlation of Ambient Air Pollutants Across Swiss Plateau NABEL Stations (2015–2019)

description: This dataset presents inter-site Spearman correlation matrices for six ambient air pollutants—PM10, PM2.5, elemental carbon (EC), sulfur dioxide (SO2), nitrogen dioxide (NO2), and carbon monoxide (CO)—as recorded by the Swiss NABEL monitoring network between 2015 and 2019.<br>The analysis is limited to NABEL stations located within the Swiss Plateau. Monitoring sites situated at high altitudes or south of the Alps were excluded for two primary reasons:(1) none of the patients in the associated clinical dataset reside in those regions, and(2) these areas represent distinct meteorological and pollution zones that are not representative of typical outpatient exposure in the Swiss Plateau.<br>The resulting Spearman correlation matrices reveal strong coherence in pollutant levels across all included sites. Within this context, the Zurich–Kaserne monitoring site stands out as both the most representative and comprehensive dataset available. It is geographically close to the clinical setting in Pfäffikon SZ—approximately 27 kilometers in straight-line distance—with the patient population largely confined to a radius of 60 kilometers, and the majority residing within 25 kilometers of the practice.<br>Zurich–Kaserne provides long-term, near-continuous monitoring for all six pollutants. While PM2.5 shows a moderate gap in data coverage (missing 186 out of 1,645 possible daily values), a robust imputation strategy was employed to reconstruct missing PM2.5 data. Specifically, missing values were predicted using a gradient-boosted regression tree model (XGBoost) trained on other pollutants (PM10, NO2, SO2, CO) measured concurrently at the same site. Predicted values were constrained to remain below or equal to PM10 to ensure physical plausibility. The remaining five pollutants (PM10, EC, NO2, SO2, CO) exhibited minimal missingness and required only occasional linear interpolation, which is flagged in the data.<br>In addition to the Excel file, a map of the included NABEL measuring sites is provided. This visual reference shows the geographic distribution and names of all stations considered in the analysis. It helps illustrate the spatial coherence of pollutant trends across the Swiss Plateau and highlights the central location of the Zurich–Kaserne site relative to the clinical population.<br>These findings justify the use of Zurich–Kaserne as the primary reference station for environmental exposure modeling in toxicokinetic analyses, particularly in studies correlating air pollutant exposure with urinary metal excretion in outpatient settings.<br>
DOI: 10.34740/kaggle/dsv/11636537
title: Public Opinion on Climate Change (Updated Daily)
DOI: 10.6084/m9.figshare.13502313.v1
title: Experimental Study on Hydraulic Conductivity and Re-sistance in Silty Sediments

description: Hydraulic conductivity and seepage resistance variance in silty sediments.
DOI: 10.6084/m9.figshare.10330688.v1
title: Dataset and code for "Quantifying irrigation cooling benefits to maize yield in the US Midwest"

description: Dataset and code for paper "Quantifying irrigation cooling benefits to maize yield in the US Midwest" by Li et al in Global Change Biology (DOI: 10.1111/gcb.15002).<br>Contact: Yan Li, yanli.geo@gmail.com
DOI: 10.6084/m9.figshare.7399163.v1
title: Supplementary Material for: Sexual Behavior: From Hormonal Regulation to Endocrine Disruption

description: Sexual behavior constitutes a chain of behavioral responses beginning with courtship and leading to copulation. These responses, which are exhibited in a sexually dimorphic manner by the two partners, are tightly regulated by sex steroid hormones as early as the perinatal period. Hormonal changes or exposure to exogenous factors exhibiting hormone-mimetic activities, such as endocrine disrupting compounds (EDC), can therefore interfere with their expression. Here we review the experimental studies in rodents performed to address the potential effects of exposure to EDC on sexual behavior and underlying mechanisms, with particular attention to molecules with estrogenic and/or anti-androgenic activities.
DOI: 10.6084/m9.figshare.7891844.v1
title: gVCF_NA18934

description: 1000 Genomes gVCF mapped to hs37d5 for NA18934. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.19329821.v1
title: Intestinal microbiota sequencing of rainbow trout under acute heat stress

description: The 16S rRNA gene sequencing analysis showed that with the increase in temperature, the relative abundance and diversity of intestinal microbiota decreased significantly, while the number of Mycoplasma, Firmicutes, and Tenericutes increased significantly.
DOI: 10.6084/m9.figshare.24916611.v1
title: BassezA_2021_3patients

description: This dataset is a Seurat object with 3 patient samples from pre-treatment ('pre') condition subset from the original data set [Bassez et al. 2021](https://www.nature.com/articles/s41591-021-01323-8): "BIOKEY_13_Pre", "BIOKEY_14_Pre", and "BIOKEY_5_Pre", without downsampling or further per sample filtering. No cells were discarded based on quality control metrics and data was normalized using Seurat `NormalizeData` function. All available metadata was included.
DOI: 10.6084/m9.figshare.26371210.v1
title: Bacteria Data

description: Benefits accrued by wild-type <i>E. coli </i>from antibiotic inhibition by antibiotic-resistant <i>E. coli</i> is often regarded as an example of altruism. However, how antibiotic-resistant cells respond to selection, benefit other cells, and then become positively assorted in a population remains poorly understood. Here, we show that some wild-type cells in <i>E. coli</i> population evolved into cooperative individuals via phenotypic plasticity under antibiotic pressure, and the process is rapid and reversible. Our experiments also showed a reciprocal exchange between the metabolism byproduct indole of antibiotic resistant cells and the consumption of indole by antibiotic sensitive cells. Mutually beneficial cooperation between antibiotic-resistant <i>E. coli</i> and antibiotic-sensitive <i>E. coli</i> was formed based on the metabolic byproduct indole. Such positive feedback will likely facilitate the evolution of the potentially costly reciprocal behavior, which has been previously demonstrated in both <i>E. coli</i> and <i>Salmonella enterica</i>. Identifying how variation in this mechanism drives the evolution of cooperation among bacterial cells will help us understand how bacteria evolve antibiotic resistance and facilitate the development of effective clinical treatments for antibiotic resistant microbes.
DOI: 10.6084/m9.figshare.1407004.v4
title: Datasets

description: Contains all the datasets available in the TISSUES database with all the data, including the non-confident gene-tissue associations. The non-confident associations are not available at the TISSUES database but were used them in the fold enrichment analyses. The files format is: Taxon_id ENSP tissues_code BTO source evidences confidence_score(stars) linkout
DOI: 10.6084/m9.figshare.28733222.v1
title: Flow cytometry data for immune cell (CD45 staining) quantification in mouse ovary

description: Raw cytometry files (.mqd) acquired using the MacsQuant Analyzer for quantifying CD45+ immune cells from mouse ovarian single-cell suspensions. Samples were collected from three distinct ovarian aging models: natural aging, VCD-induced and <i>Foxl2</i> haploinsufficiency. Sample information can be found in the metadata.
DOI: 10.6084/m9.figshare.27605520.v1
title: Mount Isa Inlier Group I Input

description: This dataset provides filtered SHRIMP U–Pb isotopic data for magmatic (Group I) zircons from the Mount Isa Inlier. It includes the following columns: sample names, ^{238}U/^{206}Pb and ^{207}Pb/^{206}Pb isotopic ratios, their associated uncertainties, and location coordinates (GDA94 Latitude and Longitude) for each sample.
DOI: 10.6084/m9.figshare.6188804.v1
title: Supplementary Material for: Mucosally Expressed Cytokines are Associated with the Esophageal Motility Function

description: <b><i>Background and Aim:</i></b> Although basic research has shown that certain cytokines affect gastrointestinal motility, the clinical evidence is lacking. The objective of this study was to explore the association between mucosally expressed cytokines and the esophageal motility function in humans. <b><i>Methods:</i></b> We enrolled a total of 57 patients with suspected esophageal motility disorders (EMDs) who underwent high-resolution manometry. <b><i>Results:</i></b> The diagnoses of the patients were as follows: normal esophageal motility (<i>n</i> = 25), ineffective esophageal motility (<i>n</i> = 5), esophagogastric junction outflow obstruction (EGJOO; <i>n</i> = 10), distal esophageal spasm (<i>n</i> = 5), achalasia (<i>n</i> = 10), absent contractility (<i>n</i> = 1), and jackhammer esophagus (<i>n</i> = 1). The expression of tumor necrosis factor (TNF)-α in the esophagogastric junction (EGJ) was significantly higher in EGJOO (14.6, 14.0–15.8, <i>n</i> = 10) than in normal esophageal motility (13.3, 12.8–14.1, <i>n</i> = 25); however, there was no difference in the expression of TNF-α between achalasia (13.4, 13.0–14.1, <i>n</i> = 10) and normal esophageal motility (13.3, 12.8–14.1, <i>n</i> = 25). EGJOO was discriminated from achalasia/normal by a linear discriminant analysis (AUC = 0.917). A multivariable regression analysis revealed that interleukin (IL)-13 and IL-23A were predictive of the distal contractile integral, whereas TNF-α and IL-6 were predictive of the basal EGJ pressure. <b><i>Conclusions:</i></b> The esophageal motility was associated with mucosally expressed cytokines in humans; these cytokines could be useful targets for the diagnosis and treatment of EMDs.
DOI: 10.6084/m9.figshare.9745061.v1
title: turf_seeds_raw_data

description: Raw data of a 16S metagenomic analysis on the bacterial community associated with cool-season turf grass seeds. The data was generated by Illumina MiSeq platform.
DOI: 10.6084/m9.figshare.24833181.v1
title: <b>Long-term stability of sapling dynamics is regulated by soil phosphorus availability in subtropical forest</b>

description: We collected annual dynamic data of 20,768 regenerating saplings, which were censused from 2008 to 2019 in a subtropical forest, to investigate how soil nutrients affect the temporal stability of productivity at both population and community levels.
DOI: 10.6084/m9.figshare.23607687.v1
title: patient59.rar

description: A Patient with fundus images that taken by Ret-cam.
DOI: 10.6084/m9.figshare.28034708.v1
title: ESM_nee

description: Anonymous ESM for peer review - details to be added later
DOI: 10.6084/m9.figshare.16607960.v1
title: DESeq Data.xlsx

description: Four excel files are included from male and female control and Ift88 KO mice: 1) DESeq dataset (transcriptomics)2) Proteomics dataset 3) Metabolomics dataset4) Lipidomics dataset
DOI: 10.6084/m9.figshare.25195637.v1
title: Supplementary Material for: The Wound Healing of Autologous Regenerative Factor on Recurrent Benign Airway Stenosis: A Canine Experimental and Pilot Study

description: <b><i>Introduction:</i></b> Benign airway stenosis (BAS) is a severe pathologic condition. Complex stenosis has a high recurrence rate and requires repeated bronchoscopic interventions for achieving optimal control, leading to recurrent BAS (RBAS) due to intraluminal granulation. <b><i>Methods:</i></b> This study explored the potential of autologous regenerative factor (ARF) for treating RBAS using a post-intubation tracheal stenosis canine model. Bronchoscopic follow-ups were conducted, and RNA-seq analysis of airway tissue was performed. A clinical study was also initiated involving 17 patients with recurrent airway stenosis. <b><i>Results:</i></b> In the animal model, ARF demonstrated significant effectiveness in preventing further collapse of the injured airway, maintaining airway patency and promoting tissue regeneration. RNA-seq results showed differential gene expression, signifying alterations in cellular components and signaling pathways. The clinical study found that ARF treatment was well-tolerated by patients with no severe adverse events requiring hospitalization. ARF treatment yielded a high response rate, especially for post-intubation tracheal stenosis and idiopathic tracheal stenosis patients. <b><i>Conclusion:</i></b> The study concludes that ARF presents a promising, effective, and less-invasive method for treating RBAS. ARF has shown potential in prolonging the intermittent period and reducing treatment failure in patients with recurrent tracheal stenosis by facilitating tracheal mucosal wound repair and ameliorating tracheal fibrosis. This novel approach could significantly impact future clinical applications.
DOI: 10.6084/m9.figshare.17706062.v1
title: Saul_et_al_2022_Plasmid Maps.zip

description: Saul et al (2022) plasmid maps
DOI: 10.6084/m9.figshare.25541614.v1
title: Lake Agassiz glacial sediment organic geochemistry.xlsx

description: Organic geochemistry (%C, %N, d<sup>13</sup>C, d<sup>15</sup>N, C:N) and dry bulk density of glacial sediments from six proglacial Lake Agassiz sediment cores retrieved from northern Minnesota, USA and northwestern Ontario, Canada.
DOI: 10.6084/m9.figshare.21533268.v1
title: RAN-noise

description: Dataset of the study of Fornasari, S. F., Ertuncay, D., and Costa, G.: Seismic Background Noise Levels in Italian Strong Motion Network, Nat. Hazards Earth Syst. Sci. Discuss. [preprint], https://doi.org/10.5194/nhess-2022-258, in review, 2022.
DOI: 10.6084/m9.figshare.6840281.v2
title: DBLP-derived labeled data for author name disambiguation

description: This is a DBLP-derived labeled data originally created by Dr. C. Lee Giles at Penn State University and filtered for duplicate removal and error correction by Dr. Jinseok Kim at University of Michigan. For more details, see references below.<br>1. Kim, Jinseok (2018). Evaluating author name disambiguation for digital libraries: a case of DBLP. Scientometrics. doi:10.1007/s11192-018-2824-5 <br>2. Kim, Jinseok & Kim, Jenna (2018). The impact of imbalanced training data on machine learning for author name disambiguation. Scientometrics. doi: 10.1007/s11192-018-2865-9<br>Each row refers to an author name instance with following feature information separated by tab.<br>author name: full name string extracted from DBLPunique author id: labels assigned manually by Dr. C. Lee Giles's teampaper id: assigned by Dr. Jinseok Kimauthor list: names of authors in the byline of the paperyear: publication yearvenue: conference or journal namestitle: stopwords removed and stemmed by the Porter's stemmer<br>If you want to use this dataset, please consider to cite papers below.<br>For the original dataset: Han, H., Giles, L., Zha, H., Li, C., & Tsioutsiouliklis, K. (2004). Two Supervised Learning Approaches for Name Disambiguation in Author Citations. JCDL 2004: Proceedings of the Fourth ACM/IEEE Joint Conference on Digital Libraries, 296-305. doi:10.1145/996350.996419<br><br>For the filtered dataset: 1. Kim, Jinseok (2018). Evaluating author name disambiguation for digital libraries: a case of DBLP. Scientometrics. doi:10.1007/s11192-018-2824-5 <br>or<br>2. Kim, Jinseok & Kim, Jenna (2018). The impact of imbalanced training data on machine learning for author name disambiguation. Scientometrics. doi: 10.1007/s11192-018-2865-9<br>
DOI: 10.6084/m9.figshare.3561492.v1
title: Appendix C. Output for GLMM analyses testing for effects of trophic rank, dispersal ability, and body size on SAR.

description: Output for GLMM analyses testing for effects of trophic rank, dispersal ability, and body size on SAR.
DOI: 10.6084/m9.figshare.23653371.v2
title: An Empirical Evaluation of Using Large Language Models for Automated Unit Test Generation

description: This is the artifact page for the TSE 2023 paper titled "An Empirical Evaluation of Using Large Language Models for Automated Unit Test Generation" by Max Schaefer, Sarah Nadi, Aryaz Eghbali, and Frank Tip. Please unzip the artifact and check the included ReadMe file for how to interpret this data and how to use the scripts.
DOI: 10.6084/m9.figshare.8332385.v1
title: Fermentation screen data all isolates

description: Mass measurements obtained from fermentations using wild yeast isolates within micro-fermenters.
DOI: 10.6084/m9.figshare.1610928.v1
title: Ópio e Hegemonia

description: A tese da paz pelo comércio defende que este reduz a probabilidade de conflitos armados entre estados numa lógica de interdependência em que o liberalismo comercial assume um papel central na condução à paz, ultrapassando desta forma a lógica conflitual defendida pelos teóricos realistas. O presente artigo pertende refutar essa tese recorrendo à analise do exemplo concreto da Guerra do Ópio de 1839-1842 e 1856-1860. Habituados a observar potências europeias a escravizar e colonizar diversos espaços pelo globo, a totalitária China da dinastia Qing não estava interessada em negociações com os países ocidentais. Para além de querer manter distância em termos diplomáticos e relacionais, não sentia necessidade de importar nenhuma manufatura ocidental, ou seja, não dependia de nenhuma importação.
DOI: 10.6084/m9.figshare.28810667.v2
title: Imaging Ng2:DsRed+ Murine Retina over 6 Hours in Culture

description: Murine retinal explant from an Ng2/Cspg4:DsRed/+ animal cultured in Dulbecco's Modified Eagle Medium (DMEM) + 5% Fetal Bovine Serum (FBS) + 1% penicillin-streptomycin at 37 degrees Celsius for 6 hours. Explants were cultured on a glass-bottom petri dish and imaged every hour on a Zeiss LSM 880 point-scanning confocal microscope. Volumetric images taken through the z-axis were acquired at 40x and 63x. Images in the figure are compressed z-stacks within a selected range, but the raw image files in .czi format are also included.
DOI: 10.6084/m9.figshare.14727840.v1
title: Effect of Flatfoot on Rearfoot Eversion Moment During the Support Phase of Walking.xlsx

description: Excessive eversion of the talus and calcaneus (i.e., the rearfoot) during the support phase of walking occurs as a result of excessive moments about the ankle caused by ground reaction forces (GRF) and may eventually lead to chronic lower limb injuries. In this study, I investigated whether individuals with flatfoot are susceptible to excessive rearfoot eversion during walking. Healthy adult male participants (n = 29) were divided, by normalized truncated navicular height, into 2 groups—individuals with flatfoot (n = 14, low values) and individuals with normal foot characteristics (n = 14, high values; the participant with the median value was excluded). Rearfoot eversion moments and the factors generating moments (ankle height, mediolateral GRF, mediolateral distance of COP, mediolateral distance of center of the ankle, vertical GRF) were calculated. These variables were compared between groups. Participants with flatfoot had significantly larger eversion moments than those in the control group after foot contact and during the loading phase; ankle joint centers in participants with flatfoot were located significantly medial to those of participants in the control group, and as a result, the mediolateral distance between the COP and the ankle (the eversion moment arm of vertical GRF) was significantly larger. Because individuals with flatfoot have ankle joint centers located medial to those with normal foot characteristics during the support phase of walking, and consequently, have an increased mediolateral distance between COP and the center of the ankle, individuals with flatfoot are susceptible to large rearfoot eversion moments.
DOI: 10.6084/m9.figshare.6137312.v1
title: American Gut collated alpha diversities

description: Collated alpha diversity values for the 9511 fecal samples used in the American Gut Project manuscript.
DOI: 10.6084/m9.figshare.12022179.v1
title: Additional file 11 of Metagenomic analysis reveals the microbiome and resistome in migratory birds

description: Additional file 11: Table S3. Bacterial taxonomic classifications via Metaphlan.
DOI: 10.6084/m9.figshare.26122540.v1
title: Summary statistics of the CP extracted from eGFR, MA, CYSC, LDL, GGT, ALB, and HbA1c

description: Summary statistics of the CP extracted from eGFR, MA, CYSC, LDL, GGT, ALB, and HbA1c, which is the CP with highest performance in CKD classification.
DOI: 10.21942/uva.25359736.v1
title: Paauw 2024 - Xanthomonas campestris genomes and assemblies

description: This repository contains 94 genome assemblies and genome annotations of <i>Xanthomonas campestris </i>isolates generated in the PhD project of Misha Paauw (supervised by Harrold van den Burg and Sebastian Pfeilmeier, Molecular Plant Pathology, University of Amsterdam).
DOI: 10.6084/m9.figshare.1133904_d2
title: Data from "A Time-indexed Reference Standard of Adverse Drug Reactions"

description: _
DOI: 10.6084/m9.figshare.22657138.v1
title: Evaluating controls on scroll bar spacing and morphology: comparing chute channel and main channel scroll bar development

description: S3: Supplementary material in the form of .kml files with site locations on Google Earth
DOI: 10.6084/m9.figshare.5178241.v1
title: The Ferrar Large Igneous Province: field and geochemical constraints on supra-crustal (high-level) emplacement of the magmatic system

description: Locations of samples.