cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24941538.v1
title: Programmable quantum circuits in a large-scale photonic waveguide array

description: Over the past decade, integrated quantum photonic technologies have shown great potential as a platform for studying quantum phenomena and realizing large-scale quantum information processing. Recently, there have been proposals for utilizing waveguide lattices to implement quantum gates, providing a more compact and robust solution compared to discrete implementation with directional couplers and phase shifters. We report on the first demonstration of precise control of single photon states on an $11\times 11$ continuously-coupled programmable waveguide array. Through electro-optical control, the array is subdivided into decoupled subcircuits and the degree of on-chip quantum interference can be tuned with a maximum visibility of 0.962$\pm$0.013. Furthermore, we show simultaneous control of two subcircuits on a single device. Our results demonstrate the potential of using this technology as a building block for quantum information processing applications.
DOI: 10.6084/m9.figshare.28143422.v1
title: Cellular context generalization datasets

description: For the cellular context generalization scenario, we curated 12 datasets categorized based on the cellular context. These datasets include eight focused on cross-cell line predictions (predicting perturbation effects in a new cell type), three focused on cross-patient predictions (predicting perturbation effects in a new patient), and one dataset focused on cross-species predictions (predicting perturbation effects in a new species).
DOI: 10.6084/m9.figshare.28334883.v1
title: Deep Regression for Repeated Measurements

description: Nonparametric mean function regression with repeated measurements serves as a cornerstone for many statistical branches, such as longitudinal/panel/functional data analysis. In this work, we investigate this problem using fully connected deep neural network (DNN) estimators with flexible shapes. A novel theoretical framework allowing arbitrary sampling frequency is established by adopting empirical process techniques to tackle clustered dependence. We then consider the DNN estimators for Hölder target function and illustrate a key phenomenon, the phase transition in the convergence rate, inherent to repeated measurements and its connection to the curse of dimensionality. Furthermore, we study several examples with low intrinsic dimensions, including the hierarchical composition model, low-dimensional support set and anisotropic Hölder smoothness. We also obtain new approximation results and matching lower bounds to demonstrate the adaptivity of the DNN estimators for circumventing the curse of dimensionality. Simulations and real data examples are provided to support our theoretical findings and practical implications. Supplementary materials for this article are available online, including a standardized description of the materials available for reproducing the work.
DOI: 10.6084/m9.figshare.29195582.v1
title: FAlen_Zn ROP

description: XYZ files for the mechanisms published with P. Le Gendre et al.
DOI: 10.6084/m9.figshare.4959869.v1
title: OCC triplestore of all the data, as of April 26, 2017

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) triplestore (Blazegraph, https://www.blazegraph.com/, licensed in GPLv2) containing all the data of the corpus, and created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-triplestore<br><br>Please execute "run.sh" for running the triplestore, and use "stop.sh" for stopping it.<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.17632/n9kbsv6rgg
title: Dynamic decoding of VEGF signaling and coordinated control of multiple phenotypes by the Src-TEM4-YAP pathway

description: MATLAB codes for generating data related Figure 6.
DOI: 10.17632/fktgy52645
title: MCA Workshop - Toxic comments

description: This dataset contains examples of tagged toxic comments collected during Mathematical Center in Akademgorodok's First Workshop. The language of the dataset is Russian, the data was obtained from comments in social network VK. 3 marks were tagged: 1) presence of obscene words 2) direction of speech and 3) moral conviction. The tagging was carried out under the guidance of representatives of the expert community.
DOI: 10.6084/m9.figshare.1425042.v2
title: Subject_17_2 from Appelgren and Bengtsson, Feedback on Trait or Action Impacts on Caudate and Paracingulum Activity, Plos one 2015

description: Subject 17 Session Trait from Appelgren and Bengtsson, Feedback on Trait or Action Impacts on Caudate and Paracingulum Activity, Plos one 2015
DOI: 10.6084/m9.figshare.1562325.v3
title: Sparse Statistical Shape Modelling

description: The provided code is based on the work by A. Gooya et al. [1] which proposes a Gaussian mixture model based approach to training statistical shape models (SSMs). The novel feature of the proposed approach is the application of a symmetric Dirichlet prior on the mixture coefficients to enforce sparsity and search over a continuous space for the optimal number of Gaussian components, to address the common issue of over or under-fitting. Additionally, we provide code to reconstruct surfaces from the unstructured point sets generated, following SSM training.
DOI: 10.6084/m9.figshare.22691380.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.26010082.v1
title: LLIN monitoring data - Dominican Republic 2023

description: <b>Description of the study</b>This data corresponds to a survey conducted in 2023 to monitor LLIN post distribution in the two main malaria foci of the Dominican Republic: Azua and San Juan. In Azua, the survey was conducted between 4 and 6 months post-distribution. In San Juan one year post-distribution.The survey was conducted in a random sample of households of each focus. The sample size per focus was calculated using the software Epi Info following simple random probability sampling, aiming to obtain a 95% confidence level and a ±6% error in the percentage of houses with enough nets to cover all sleeping spaces and considering that Azua and San Juan had a finite number of households. The number of houses visited in each locality was calculated based on the proportion of the households in each locality out of the total number of households in localities that received LLINs. In the absence of an updated population census, the total number of households in each locality was obtained from reports made during the LLIN installation and IRS campaigns. To define the households to be visited, the total number of households was divided by the number of households to be visited in the locality to obtain the interval for selecting households in the field (e.g. if the locality had 150 households and 15 had to be visited, field teams would interview 1 out of every 10 households they encountered). Fieldworkers started at a random corner of the locality and chose households based on the selection interval (e.g. 1 every 10 households).Each household received a survey in Spanish (Additional file 1). The survey included questions addressed to the head of the household, questions addressed to a random member of the household, and questions about a randomly selected LLIN in the household. Due to the absence of an updated census of the population, the random member was selected by the surveyor in situ, and so was the random LLIN (considering both installed and uninstalled nets present in the household). Several of the questions were verified by the surveyors inside the house by visual inspection of sleeping spaces, nets or net drying places. The physical integrity of the LLINs was verified in situ by extending the net and counting the holes of four different sizes as per WHO guidelines<b>Description of the data collection tool and data storage</b>The data was collected in Survey CTO and stored in a cloud Survey CTO server v2.81.1.<b>File structure</b>There are two csv files. One contains the raw data from the surveys conducted in Azua and San Juan. Each line in the data set represents one questionnaire in one household. All household identifiers (i.e. coordinates, address and name of the household owner) were removed to anonymize the data. The other one contains the data dictionary explaining the meaning of each variable in Spanish and English.
DOI: 10.6084/m9.figshare.8153852.v1
title: Somatic VCF file of 185 matched CMT-normal pairs

description: This VCF file is merged variant calls of whole exome sequencing of 185 matched CMT and normal samples called by Mutect2<br>
DOI: 10.17632/czxrnc3xz9
title: LINF_190017800

description: LCS-TC/CRSF-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/p8hvpw6836
title: evaluative devices data for Mandarin-speaking children aged 3 to 6

description: This data is about the evaluative devices employed by Mandarin-speaking children aged 3 to 6 in their personal narratives.
DOI: 10.6084/m9.figshare.25866937.v1
title: data.xls

description: This data was collected from 354 registered nurses who worked in two tertiary hospitals in China for more than one year from May 4th to 17th, 2021. A questionnaire survey was conducted on the general demographic information, core competencies of nurses, work environment, self-learning ability, self-efficacy, and knowledge sharing behavior of the research subjects.
DOI: 10.6084/m9.figshare.27174252.v3
title: data, R code and other files

description: Data and code available for the paper.
DOI: 10.17632/sm7p9j736k
title: Dataset for Forecasting the climate-conflict risk in Africa

description: Dataset and scripts for replicating the paper "Forecasting the climate-conflict risk in Africa along climate-related scenarios and multiple socio-economic drivers"

Caterina Conigliani (Roma Tre University); Valeria Costantini (Roma Tre University); Elena Paglialunga (Roma Tre University); Andrea Tancredi (La Sapienza University)

Abstract
This study investigates how climate change might impact economic development in the future through its effects on violence, addressing the gap in research on long-term conflict risk assessment. Using geocoded data (1° resolution) on climate and socio-economic indicators covering 1990-2050, we employ a forecasting recursive model to examine the probability and intensity of different types of conflict, under various socio-economic and climate scenarios. Our analysis reveals that climate change has both direct and indirect effects on violence, highlighting the key role of the agricultural channel, the spillover across neighbouring areas and the socio-economic context. These findings offer new insights into adaptation strategy and provide implications for the need to jointly account for the complex interactions between climate conditions, socio-economic factors, and conflict dynamics.
DOI: 10.17632/zh7bx2my7f
title: Efficacy and safety of tildrakizumab for the treatment of moderate-to-severe plaque psoriasis of the scalp: A multicenter, randomized, double-blind, placebo-controlled, Phase 3b study supplemental material

description: This is the supplemental material for the manuscript titled, "Efficacy and safety of tildrakizumab for the treatment of moderate-to-severe plaque psoriasis of the scalp: A multicenter, randomized, double-blind, placebo-controlled, Phase 3b study" by Gebauer K. et al., 2024.
DOI: 10.6084/m9.figshare.19661094.v1
title: Plant community data collected by Robert H. Whittaker in the Siskiyou Mountains, Oregon and California, USA

description: Data are fully described in the Word document titled "Metadata S1"
DOI: 10.6084/m9.figshare.20098631.v1
title: Additional file 3 of The association of hyponatremia and clinical outcomes in patients with acute myocardial infarction: a cross-sectional study

description: Additional file 3. Data.
DOI: 10.17632/69hhwc3fd3
title: Dataset of 30-Inch Propellers Performance for UAVs: A Comprehensive Comparison in Hover Condition

description: Data for a variety of 30-inch propellers with different pitch and a folding type propeller have been collected using the Flight Stand 50 setup from Tyto Robotics. All tests were performed in hover condition, and the data was collected at 100Hz for a duration of 60 seconds for each case. The testing and data acquisition were carried out using the Flight Stand software. The Electronic Speed Controller (ESC) signal was used as an input to control the motor speed (RPM) during the experiments. The tests were conducted by setting the desired RPM to measure the required parameters and were carried out between 1500 RPM to 3500 RPM. The investigation of 5 propellers, 1 battery, and 1 motor was conducted in this study. 
Researchers and engineers can utilize this data to evaluate the efficiency of the propellers for designing Unmanned Aerial Vehicles (UAVs).
DOI: 10.17632/fg3r3gf7rj
title: PEth Testing False Positives

description: Experts assert that there is no such thing as a false positive DBS PEth test (Dry Blood Spot Phosphatidylethanol). PEth is a biomarker determining alcohol consumption and false positives have caused loss of life, careers, and custody battles. The PEth test is non-FDA approved blood test. The researcher hypothesized that a false positive was possible. The researcher abstained from alcohol for 30 days, then donated five blood samples, on the same day, at a USDTL lab. Each sample submitted provided a different name and number to avoid bias at the lab, but confirmation that all blood samples were from the same person as identified by the methodology of gathering the sample. Sample 1 was a whole blood PEth (WB) sample. Sample 2-5 were Dry Blood Spot PEth (DBS). Samples 1-3 that indicated there was no alcohol consumption, however, tests 4 and 5 indicated positive tests, associated with exessive alcohol consumption. In that all samples came from the same human on the same day within a five-hour period, and three of the five samples confirm no alcohol consumption, this indicates false positives do exist. The significance of this research is that people are unjustly losing their careers, child custody, and their lives if removed from a donor list, because of a false assertion of alcohol consumption.
DOI: 10.17632/s4pj4gwthj
title: Replication Code/Pseudo Data for: "Collateral Eligibility of Corporate Debt in the Eurosystem"

description: The files contain replication codes and pseudo data for generating the tables and figures in the paper "Collateral Eligibility of Corporate Debt in the Eurosystem", by Loriana Pelizzon, Max Riedel, Zorka Simon, and Marti G. Subrahmanyam, Journal of Financial Economics, Forthcoming.
DOI: 10.6084/m9.figshare.23616822.v1
title: datasets.xlsx

description: The datasets are adopted to graph the GDP growth rates of different countries and measure the corresponding output elasticity coefficients of manufacturing subindustries and the national economy in China.
DOI: 10.6084/m9.figshare.24988164.v1
title: Acoustic-Driven Magnetic Skyrmion Motion

description: data
DOI: 10.6084/m9.figshare.27186099.v1
title: Chromosome-level Genome Assembly and Annotation of the Arctic Moss <i>Ptychostomum knowltonii</i>

description: This database contains genome assembly and annotation files for Arctic moss Ptychostomum knowltonii.
DOI: 10.6084/m9.figshare.3113356.v1
title: Volunteering_Data.pdf

description: <i>Background – </i>The motivation to volunteer on a medical service trip (MST) may involve more than a simple desire for philanthropy. Some volunteers may be motivated by an intrinsic interest in volunteering in which the context of the volunteer activity is less important. Others may volunteer because the context of their volunteering is more important than their intrinsic interest in volunteering. Furthermore, MSTs may pose a variety of ethical problems that volunteers should consider prior to engaging in a trip. This study evaluated the motivations and barriers for graduate health care students volunteering for an MST to either the Dominican Republic or Mississippi. Volunteers’ understanding of some of the ethical issues associated with MSTs was also assessed. <i>Methods – </i>Thirty-five graduate health professions students who volunteered on an MST were asked to complete an online survey. Students’ motivations and barriers for volunteering were assessed using a 5-point Likert scale and Fisher’s exact test. Ethical understanding of issues in volunteering was assessed using thematic analysis. <i>Results - </i>Students’ motivations for volunteering appeared to be related to the medical context of their service more than an inherent desire for volunteer work. Significant differences were seen in motivations and barriers for some student groups, especially those whose volunteer work had less opportunity for clinical service. Thematic analysis revealed two major themes and suggested that students had an empirical understanding that volunteer work could have both positive and negative effects. <i>Conclusions – </i>An understanding of students’ motivations for volunteering on an MST may allow faculty to design trips with activities that effectively address student motivations. Although students had a basic understanding of some of the ethical issues involved, they had not considered the impact of a service group on the in-country partners they work with.
DOI: 10.6084/m9.figshare.5951836.v1
title: Supplementary Material for: Phospholipase A<sub>2</sub> of Microbiota as Pathogenetic Determinant to Induce Inflammatory States in Ulcerative Colitis: Therapeutic Implications of Phospholipase A<sub>2</sub> Inhibitors

description: <b><i>Background:</i></b> Attack by commensal microbiota is one component of induction of inflammatory episodes in ulcerative colitis (UC). In UC, the mucus layer is intrinsically devoid of phosphatidylcholine (PC) resulting in low hydrophobicity which facilitates bacterial invasion. Colonic ectophospholipase-carrying bacterial strains are likely candidates to further thinning the PC mucus barrier and to precipitate inflammatory episodes. <b><i>Objective:</i></b> To evaluate the effect of phospholipase A<sub>2</sub> (PLA<sub>2</sub>) inhibitors on inflammation in a genetic UC mouse model. <b><i>Methods:</i></b> As PLA<sub>2</sub> inhibitor, we applied the bile acid-phospholipid conjugate ursodeoxycholate-lysophosphatidylethanolamide (UDCA-LPE) or as control 5% Tween 80 by oral gavage to intestine-specific kindlin 2 knockout mice. <b><i>Results:</i></b> Luminal UDCA-LPE reduced the PLA<sub>2</sub> activity in stool by 36 ± 8%. Concomitantly no inflammatory phenotype was observed when compared to kindlin 2<sup>(–/–)</sup> mice not treated with UDCA-LPE. The improvement was documented in regard to stool consistency, calprotectin levels in stool, and macroscopic/endoscopic as well as histologic features of the mucosa. The pattern of colonic microbiota distribution obtained in the UC phenotype mice was reversed by UDCA-LPE to the control mice pattern. <b><i>Conclusion:</i></b> The inhibition of the bacterial ectophospholipase A<sub>2</sub> activity improves mucosal inflammation in a genetic mouse model of UC. It is assumed that the remaining mucus PC shield is better preserved when luminal PLA<sub>2</sub> is suppressed.
DOI: 10.6084/m9.figshare.7659560.v1
title: Additional file 4: of Integration of genomic copy number variations and chemotherapy-response biomarkers in pediatric sarcoma

description: Integrated CNVs from sarcoma cells and sarcoma patients of OS, RMS and ESFT. (XLSX 3277 kb)
DOI: 10.17632/8dcwfdz772
title: TSAQ 3

description: A random sampling method was used to select freshman to graduate students in Fuzhou City for the survey. Before the survey was informed of the purpose of the survey and the requirements for filling it out, and then the subjects filled it out by themselves and collected the questionnaires on the spot after completion. The exclusion criteria were the same as above, and finally, 769 valid questionnaires were obtained. Among them, 261 were male (33.94%), 507 were female (65.93%), and one was not reported gender (0.13%). There were 416 (54.10%) majors in literature and history and 353 (45.90%) majors in science and technology; 159 freshmen (20.68%), 33 sophomores (4.29%), 328 juniors (42.65%), 112 seniors (14.56%), and 137 graduate students (17.82%). Gender equivalence tests and mixed factor model tests were performed on the data collected in Sample 3.
DOI: 10.17632/ksth274yx2
title: Molecular dynamics simulation for effect of stress on quartz dissolution: implication on the development of high-quality reservoirs in Foreland Basins

description: The data includes the structural files of the simulation experiment (which need to be opened using Materials Studio software), as well as the experimental results
DOI: 10.17632/vbs8kbv9wt
title: Experimental data set from a GFRP experimental benchmark case for validating the simulation of mode I fatigue-driven delamination in composite laminates

description: This data repository provides the raw and processed data to reproduce the experimental fatigue test results presented in the article entitled "Benchmark test for mode I fatigue-driven delamination in GFRP composite laminates: Experimental results and simulation with the inter-laminar damage model implemented in SAMCEF" by the same authors. In this work,  experimental results from a demonstrator specimen made of a non-crimp fabric laminated Glass Fiber Reinforced Polymer (GFRP) used in the wind energy industry are provided. The selected benchmark case shows varying crack growth rates and crack front shape over the fatigue life, making it more representative of structures in service than coupon specimens. 

The test configuration, the methodology and the data processing are addressed in the related article. Data from Figure 7 is provided here. Five coupon specimens were tested to obtain the mode I inter-laminar fatigue crack growth rate curves. The Matlab scripts for data treatment are also included. In addition, data from Appendix B is provided. Three demonstrator specimens were tested to provide crack front geometries during the fatigue testing. In addition, a complete set of elastic, fracture and fatigue properties for the material are provided in the article. This data set, in conjunction with the associated article, constitutes a comprehensive benchmark test against which existing or future delamination growth models can be evaluated.
DOI: 10.6084/m9.figshare.21298413.v1
title: Thermophysical properties of FLiBe using moment tensor potentials

description: This collection contains a series of input files and data sets related to the article: <br> Thermophysical properties of FLiBe using moment tensor potentials, Journal of Molecular Liquids, 2022