cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5328133
title: Abbreviation list from Characteristics of 29 novel atypical solute carriers of major facilitator superfamily type: evolutionary conservation, predicted structure and neuronal co-expression

description: Abbreviations included in the manuscript.
DOI: 10.6084/m9.figshare.5328139.v1
title: Supporting Information from Influence of solvents in the preparation of cobalt sulfide for supercapacitors

description: In this study, cobalt sulfide (CoS) electrodes are synthesized using various solvents such as water, ethanol and a combination of the two via a facile chemical bath deposition method on Ni foam. The crystalline nature, chemical states and surface morphology of the prepared CoS nanoparticles are characterized using X-ray diffraction, X-ray photoelectron spectroscopy, scanning electron microscopy and transition electron microscopy. The electrochemical properties of CoS electrodes are also evaluated using cyclic voltammetry, galvanostatic charge–discharge and electrochemical impedance spectroscopy. When used as an electrode for a supercapacitor, CoS prepared with ethanol as a solvent exhibits a capacitance of 41.36 F g<sup>−1</sup> at 1.5 A g<sup>−1</sup>, which is significantly better than that prepared using water and ethanol (31.66 and 18.94 F g<sup>−1</sup> at 1.5 A g<sup>−1</sup>, respectively). This superior capacitance is attributed to the ideal surface morphology of the solvent, which allows for easy diffusion of electrolyte ions into the inner region of the electrode. High electrical conduction enables a high rate capability. These results suggest that CoS nanoparticles are highly promising for energy storage applications as well as photocatalysis, electrocatalysis, water splitting and solar cells, among others. These results show that the CoS is promising positive electrode materials for practical supercapacitor.
DOI: 10.6084/m9.figshare.5328127
title: Simulation Code from Using stochastic epidemiological models to evaluate conservation strategies for endangered amphibians

description: Simulation source code and parameter data
DOI: 10.6084/m9.figshare.5328133.v1
title: Abbreviation list from Characteristics of 29 novel atypical solute carriers of major facilitator superfamily type: evolutionary conservation, predicted structure and neuronal co-expression

description: Abbreviations included in the manuscript.
DOI: 10.6084/m9.figshare.5328121
title: Age Files

description: SDATA-17-00290 Scientific Data Descriptors is the complete raw data descriptors of all individual digital bispectral-EEG data, and all our blood samples results.
DOI: 10.6084/m9.figshare.5328052
title: Track 1 Lightning Talk: Research Software in Brazil - Dataset

description: In 2014, some of the finding from the “UK research software survey 2014” by Hettrick et al. were that “92% of academics use research software, 69% say that their research would not be practical without it and 56% develop their own software (worryingly, 21% of those have no training in software development).” The author of this work was interested to know if Brazil has similar figures.
DOI: 10.6084/m9.figshare.5328127.v1
title: Simulation Code from Using stochastic epidemiological models to evaluate conservation strategies for endangered amphibians

description: Simulation source code and parameter data
DOI: 10.6084/m9.figshare.5328034
title: Alinhamentos sem definição do parâmetro e-value

description: Alinhamentos utilizando a ferramenta Blastp sem definir um e-value minimo.
DOI: 10.6084/m9.figshare.5328052.v1
title: Track 1 Lightning Talk: Research Software in Brazil - Dataset

description: In 2014, some of the finding from the “UK research software survey 2014” by Hettrick et al. were that “92% of academics use research software, 69% say that their research would not be practical without it and 56% develop their own software (worryingly, 21% of those have no training in software development).” The author of this work was interested to know if Brazil has similar figures.
DOI: 10.6084/m9.figshare.5328121.v2
title: Age Files

description: SDATA-17-00290 Scientific Data Descriptors is the complete raw data descriptors of all individual digital bispectral-EEG data, and all our blood samples results.
DOI: 10.6084/m9.figshare.5328121.v1
title: Age23 80s 1.xls

description: SDATA-17-00290 Scientific Data submission. What we need to expand upon, that would fully complement our <i>Scientific Reports</i> manuscript SREP-17-34544 is the complete raw data descriptors of all 80 individual digital bispectral-EEG data, all our blood samples results, 80 individual traditional sigmoid E<sub>max</sub> models, 80 individual logistic models, and our population pharmacokinetic-pharmacodynamic covariate analysis of all demographic and biological characteristics.
DOI: 10.6084/m9.figshare.5328013
title: DNA barcoding of South Africa’s ornamental freshwater fish – are the names reliable?

description: Trade in freshwater ornamental fish in South Africa is currently regulated by a ‘blacklist’ to prevent potentially invasive taxa from establishing in the country. Because its effective implementation requires accurate identification, the aim of the present study was to test whether DNA barcoding is a useful tool to identify freshwater fishes in the South African pet trade. A total of 351 aquarium fish specimens, representing 185 traded taxa, were sequenced for the mitochondrial COI barcoding marker in 2011 and 2012. Lake Malawi cichlids were treated as a single group due to a lack of resolution in their COI marker, resulting in a data set of 137 successfully sequenced taxa. The Barcode Of Life Database (BOLD) and GenBank were used for taxonomic assignment comparisons. The genetic identification matched the scientific name inferred from the trade name for 60 taxa (43.8%) using BOLD, and for 67 taxa (48.9%) using GenBank. A genetic ID could not be assigned in 47 (34.3%) cases using BOLD and in 37 cases (27%) using GenBank. Whereas DNA barcoding can be a useful tool to help identify imported freshwater fishes, it requires further development of publicly available databases to become a reliable means of identification.
DOI: 10.6084/m9.figshare.5328034.v1
title: Alinhamentos sem definição do parâmetro e-value

description: Alinhamentos utilizando a ferramenta Blastp sem definir um e-value minimo.
DOI: 10.6084/m9.figshare.5328013.v1
title: DNA barcoding of South Africa’s ornamental freshwater fish – are the names reliable?

description: Trade in freshwater ornamental fish in South Africa is currently regulated by a ‘blacklist’ to prevent potentially invasive taxa from establishing in the country. Because its effective implementation requires accurate identification, the aim of the present study was to test whether DNA barcoding is a useful tool to identify freshwater fishes in the South African pet trade. A total of 351 aquarium fish specimens, representing 185 traded taxa, were sequenced for the mitochondrial COI barcoding marker in 2011 and 2012. Lake Malawi cichlids were treated as a single group due to a lack of resolution in their COI marker, resulting in a data set of 137 successfully sequenced taxa. The Barcode Of Life Database (BOLD) and GenBank were used for taxonomic assignment comparisons. The genetic identification matched the scientific name inferred from the trade name for 60 taxa (43.8%) using BOLD, and for 67 taxa (48.9%) using GenBank. A genetic ID could not be assigned in 47 (34.3%) cases using BOLD and in 37 cases (27%) using GenBank. Whereas DNA barcoding can be a useful tool to help identify imported freshwater fishes, it requires further development of publicly available databases to become a reliable means of identification.
DOI: 10.6084/m9.figshare.5327953
title: Proyecto Adiemus: Formación integral de músicos católicos

description: Este proyecto desarrollado entre 2008-2011 en la Costa Oriental del Lago en el estado Zulia, Venezuela. Su finalidad es la formación integral de músicos católicos en aspectos como Liturgia, Música, Autoestima y Liderazgo, con el propósito de formar jóvenes líderes capaces de tomar un rol activo dentro de la parroquia a la que pertenecen. En la actualidad, este proyecto sigue activo bajo la acción del equipo de Fundación Nativo (http://fundanativo.wix.com/1).<br>
DOI: 10.6084/m9.figshare.5327953.v2
title: Proyecto Adiemus: Formación integral de músicos católicos

description: Este proyecto desarrollado entre 2008-2011 en la Costa Oriental del Lago en el estado Zulia, Venezuela. Su finalidad es la formación integral de músicos católicos en aspectos como Liturgia, Música, Autoestima y Liderazgo, con el propósito de formar jóvenes líderes capaces de tomar un rol activo dentro de la parroquia a la que pertenecen. En la actualidad, este proyecto sigue activo bajo la acción del equipo de Fundación Nativo (http://fundanativo.wix.com/1).<br>
DOI: 10.6084/m9.figshare.5327935
title: Multisensory_emotions.mat

description: The human emotional reactions to stimuli delivered by different sensory modalities is a topic of interest for many disciplines, from Human-Computer-Interaction to cognitive sciences. Different databases of stimuli eliciting emotional reaction are available, tested on a high number of participants. Interestingly, stimuli within one database are always of the same type. In other words, to date, no data was obtained and compared from distinct types of emotion-eliciting stimuli from the same participant. This makes it difficult to use different databases within the same experiment, limiting the complexity of experiments investigating emotional reactions. Moreover, whereas the stimuli and the participants’ rating to the stimuli are available, physiological reactions of participants to the emotional stimuli are often recorded but not shared. Here, we test stimuli delivered either through a visual, auditory, or haptic modality in a within participant experimental design. We provide the results of our study in the form of a MATLAB structure including basic demographics on the participants, the participant’s self-assessment of his/her emotional state, and his/her physiological reactions (i.e., skin conductance).
DOI: 10.6084/m9.figshare.5327953.v1
title: Proyecto Adiemus: Formación integral de músico católicos

description: Este proyecto desarrollado entre 2008-2011 en la Costa Oriental del Lago en el estado Zulia, Venezuela. Su finalidad es la formación integral de músicos católicos en aspectos como Liturgia, Liderazgo, Autoestima y Formación Musical, con el propósito de formar jóvenes líderes capaces de tomar un rol activo dentro de la parroquia a la que pertenecen.<br>
DOI: 10.6084/m9.figshare.5327926
title: Blasp P. pachyrhizi

description: Resultados de blastp sequências de proteínas de <i>P. pachyrhizi</i>, contra banco SwissPprot Uniprot
DOI: 10.6084/m9.figshare.5327887
title: cont_reads_Ppachyrhizi.csv

description: Contagem de reads referente à 36.350 sequências unigene de <i>Phakopsora pachyrhizi</i>
DOI: 10.6084/m9.figshare.5327926.v1
title: Blasp P. pachyrhizi

description: Resultados de blastp sequências de proteínas de <i>P. pachyrhizi</i>, contra banco SwissPprot Uniprot
DOI: 10.6084/m9.figshare.5327887.v1
title: cont_reads_Ppachyrhizi.csv

description: Contagem de reads referente à 36.350 sequências unigene de <i>Phakopsora pachyrhizi</i>
DOI: 10.6084/m9.figshare.5327851
title: Aggressive, omnivorous, invasive: the Erythraean moon crab <i>Matuta victor</i> (Fabricius, 1781) (Crustacea: Decapoda: Matutidae) in the eastern Mediterranean sea

description: Since its first sighting in 2012 in Haifa Bay, Israel, the population of the Indo-Pacific moon crab, <i>Matuta victor</i>, has increased greatly along the Israeli littoral and spread to Lebanon and the Mediterranean coast of Turkey. To examine possible interactions with the Levantine nearshore psammophilic community, the crab’s feeding behaviour was observed <i>in situ</i> and the foregut contents of 69 specimens collected in December 2015 and June 2016 were analysed. Its omnivorous diet was confirmed and previously unknown intraspecific competitive feeding behaviour is reported. The agonistic behaviour may denote behavioural flexibility that enables the crabs to colonize and persist in a depauperate novel habitat. Site-specific disturbance regimen related to human activities seems to have had a critical role in driving the rapid population increase.
DOI: 10.6084/m9.figshare.5327851.v1
title: Aggressive, omnivorous, invasive: the Erythraean moon crab <i>Matuta victor</i> (Fabricius, 1781) (Crustacea: Decapoda: Matutidae) in the eastern Mediterranean sea

description: Since its first sighting in 2012 in Haifa Bay, Israel, the population of the Indo-Pacific moon crab, <i>Matuta victor</i>, has increased greatly along the Israeli littoral and spread to Lebanon and the Mediterranean coast of Turkey. To examine possible interactions with the Levantine nearshore psammophilic community, the crab’s feeding behaviour was observed <i>in situ</i> and the foregut contents of 69 specimens collected in December 2015 and June 2016 were analysed. Its omnivorous diet was confirmed and previously unknown intraspecific competitive feeding behaviour is reported. The agonistic behaviour may denote behavioural flexibility that enables the crabs to colonize and persist in a depauperate novel habitat. Site-specific disturbance regimen related to human activities seems to have had a critical role in driving the rapid population increase.
DOI: 10.6084/m9.figshare.5327845.v2
title: Solvent sensitivity of protein aggregation in Cu, Zn superoxide dismutase: a molecular dynamics simulation study

description: Misfolding and aggregation of Cu, Zn Superoxide Dismutase (SOD1) is often found in amyotrophic lateral sclerosis (ALS) patients. The central apo SOD1 barrel was involved in protein maturation and pathological aggregation in ALS. In this work, we employed atomistic molecular dynamics (MD) simulations to study the conformational dynamics of SOD1<sup>barrel</sup> monomer in different concentrations of trifluoroethanol (TFE). We find concentration dependence unusual structural and dynamical features, characterized by the local unfolding of SOD1<sup>barrel</sup>. This partially unfolded structure is characterized by the exposure of hydrophobic core, is highly dynamic in nature, and is the precursor of aggregation seen in SOD1<sup>barrel</sup>. Our computational studies supports the hypothesis of the formation of aggregation ‘building blocks’ by means of local unfolding of apo monomer as the mechanism of SOD1 fibrillar aggregation. The non-monotonic TFE concentration dependence of protein conformational changes was explored through simulation studies. Our results suggest that altered protein conformation and dynamics within its structure may underlie the aggregation of SOD1 in ALS.
DOI: 10.6084/m9.figshare.5327833
title: New alien vascular species for the flora of southern Italy

description: In the present work new or confirmed alien not-cultivated vascular plants are reported for the flora of the southern Italy regions: <i>Acalypha virginica</i>, <i>Alcea biennis</i> subsp. <i>biennis</i>, <i>Bidens subalternans</i>, <i>Cardamine occulta</i>, <i>Casuarina equisetifolia</i>, <i>Cedrus atlantica</i>, <i>Cedrus deodara</i>, <i>Chamaeiris orientalis</i>, <i>Cotula coronopifolia</i>, <i>Elodea canadensis</i>, <i>Eragrostis mexicana</i> subsp. <i>virescens</i>, <i>Euphorbia nutans</i>, <i>Fagopyrum esculentum</i>, <i>Ficus microcarpa</i>, <i>Hesperocyparis arizonica</i>, <i>Hesperocyparis glabra</i>, <i>Kalanchoë</i> × <i>houghtonii</i>, <i>Lantana camara</i> subsp. <i>aculeata</i>, <i>Lemna minuta</i>, <i>Ligustrum sinense</i>, <i>Lobelia erinus</i>, <i>Lonicera japonica</i>, <i>Oenothera lindheimeri</i>, <i>Panicum capillare</i>, <i>Persicaria capitata</i>, <i>Phyla nodiflora</i>, <i>Schinus molle</i>, <i>Sedum palmeri</i>, <i>Sesbania punicea</i>, <i>Solanum elaeagnifolium</i>, <i>Solanum sisymbriifolium</i> and <i>Veronica peregrina</i>. Furthermore, <i>Lantana montevidensis</i> is new for the Italian alien flora, <i>Asparagus asparagoides</i> and <i>Tradescantia pallida</i> are reported for the first time in continental Italy, whereas <i>Cucurbita moschata</i>, <i>Nandina domestica</i> and <i>Taxodium distichum</i> are new for the Italian peninsula. Moreover, field surveys in Campania allow us to update at regional level the naturalization status of <i>Euphorbia nutans</i> (naturalized) and <i>Ligustrum sinense</i> (casual). The new data confirm that new non-native species are continuously introduced into the flora of southern Italy and it is noteworthy that several species, widely used in the reforestation since the middle of the last century, have undergone naturalization in recent years.
DOI: 10.6084/m9.figshare.5327845.v1
title: Solvent sensitivity of protein aggregation in Cu, Zn superoxide dismutase: a molecular dynamics simulation study

description: Misfolding and aggregation of Cu, Zn Superoxide Dismutase (SOD1) is often found in amyotrophic lateral sclerosis (ALS) patients. The central apo SOD1 barrel was involved in protein maturation and pathological aggregation in ALS. In this work, we employed atomistic molecular dynamics (MD) simulations to study the conformational dynamics of SOD1<sup>barrel</sup> monomer in different concentrations of trifluoroethanol (TFE). We find concentration dependence unusual structural and dynamical features, characterized by the local unfolding of SOD1<sup>barrel</sup>. This partially unfolded structure is characterized by the exposure of hydrophobic core, is highly dynamic in nature, and is the precursor of aggregation seen in SOD1<sup>barrel</sup>. Our computational studies supports the hypothesis of the formation of aggregation ‘building blocks’ by means of local unfolding of apo monomer as the mechanism of SOD1 fibrillar aggregation. The non-monotonic TFE concentration dependence of protein conformational changes was explored through simulation studies. Our results suggest that altered protein conformation and dynamics within its structure may underlie the aggregation of SOD1 in ALS.
DOI: 10.6084/m9.figshare.5327827
title: Acoustic differences in morphologically-distinct homophones

description: Previous work demonstrates that a word's status as morphologically-simple or complex may be reflected in its phonetic realisation. One possible source for these effects is phonetic paradigm uniformity, in which an intended word's phonetic realisation is influenced by its morphological relatives. For example, the realisation of the inflected word <i>frees</i> should be influenced by the phonological plan for <i>free</i>, and thus be non-homophonous with the morphologically-simple word <i>freeze</i>. We test this prediction by analysing productions of forty such inflected/simple word pairs, embedded in pseudo-conversational speech structured to avoid metalinguistic task effects, and balanced for frequency, orthography, as well as segmental and prosodic context. We find that stem and suffix durations are significantly longer by about 4–7% in fricative-final inflected words (<i>frees</i>, <i>laps</i>) compared to their simple counterparts (<i>freeze</i>, <i>lapse</i>), while we find a null effect for stop-final words. The result suggests that wordforms influence production of their relatives.
DOI: 10.6084/m9.figshare.5327833.v1
title: New alien vascular species for the flora of southern Italy

description: In the present work new or confirmed alien not-cultivated vascular plants are reported for the flora of the southern Italy regions: <i>Acalypha virginica</i>, <i>Alcea biennis</i> subsp. <i>biennis</i>, <i>Bidens subalternans</i>, <i>Cardamine occulta</i>, <i>Casuarina equisetifolia</i>, <i>Cedrus atlantica</i>, <i>Cedrus deodara</i>, <i>Chamaeiris orientalis</i>, <i>Cotula coronopifolia</i>, <i>Elodea canadensis</i>, <i>Eragrostis mexicana</i> subsp. <i>virescens</i>, <i>Euphorbia nutans</i>, <i>Fagopyrum esculentum</i>, <i>Ficus microcarpa</i>, <i>Hesperocyparis arizonica</i>, <i>Hesperocyparis glabra</i>, <i>Kalanchoë</i> × <i>houghtonii</i>, <i>Lantana camara</i> subsp. <i>aculeata</i>, <i>Lemna minuta</i>, <i>Ligustrum sinense</i>, <i>Lobelia erinus</i>, <i>Lonicera japonica</i>, <i>Oenothera lindheimeri</i>, <i>Panicum capillare</i>, <i>Persicaria capitata</i>, <i>Phyla nodiflora</i>, <i>Schinus molle</i>, <i>Sedum palmeri</i>, <i>Sesbania punicea</i>, <i>Solanum elaeagnifolium</i>, <i>Solanum sisymbriifolium</i> and <i>Veronica peregrina</i>. Furthermore, <i>Lantana montevidensis</i> is new for the Italian alien flora, <i>Asparagus asparagoides</i> and <i>Tradescantia pallida</i> are reported for the first time in continental Italy, whereas <i>Cucurbita moschata</i>, <i>Nandina domestica</i> and <i>Taxodium distichum</i> are new for the Italian peninsula. Moreover, field surveys in Campania allow us to update at regional level the naturalization status of <i>Euphorbia nutans</i> (naturalized) and <i>Ligustrum sinense</i> (casual). The new data confirm that new non-native species are continuously introduced into the flora of southern Italy and it is noteworthy that several species, widely used in the reforestation since the middle of the last century, have undergone naturalization in recent years.
DOI: 10.6084/m9.figshare.5327827.v1
title: Acoustic differences in morphologically-distinct homophones

description: Previous work demonstrates that a word's status as morphologically-simple or complex may be reflected in its phonetic realisation. One possible source for these effects is phonetic paradigm uniformity, in which an intended word's phonetic realisation is influenced by its morphological relatives. For example, the realisation of the inflected word <i>frees</i> should be influenced by the phonological plan for <i>free</i>, and thus be non-homophonous with the morphologically-simple word <i>freeze</i>. We test this prediction by analysing productions of forty such inflected/simple word pairs, embedded in pseudo-conversational speech structured to avoid metalinguistic task effects, and balanced for frequency, orthography, as well as segmental and prosodic context. We find that stem and suffix durations are significantly longer by about 4–7% in fricative-final inflected words (<i>frees</i>, <i>laps</i>) compared to their simple counterparts (<i>freeze</i>, <i>lapse</i>), while we find a null effect for stop-final words. The result suggests that wordforms influence production of their relatives.
DOI: 10.6084/m9.figshare.5327710
title: Phagocytosis

description: Mouse peritoneal macrophage takes up apoptotic cells. Image sequence.Related Content: Transcriptional control of apoptotic cell clearance by macrophage nuclear receptors. Apoptosis. 2017 Feb;22(2):284-294. doi: 10.1007/s10495-016-1310-x.
DOI: 10.6084/m9.figshare.5327713
title: Prevalence of several somatic diseases depends on the presence and severity of obstructive sleep apnea

description: Data used in study "Prevalence of several somatic diseases depends on the presence and severity of obstructive sleep apnea."<br>The objective was to investigate the prevalence of heart attack, angina pectoris, stroke, hypertension, diabetes mellitus, chronic obstructive pulmonary disease, asthma and obesity in relation to the presence and severity of obstructive sleep apnea. <br>The sample consisted of 1887 patients, with mean age of 48.6 years (range 16-83 years), referred to a university hospital on suspicion of obstructive sleep apnea. The patients filled out a questionnaire asking whether they were previously diagnosed with the comorbidities in interest. Obstructive sleep apnea was diagnosed and categorised based on a standard respiratory polygraphic sleep study using a type 3 portable monitor. The patients' weight, height and blood pressure were measured during the consultations.