cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/5gstg3
title: Jeffery V. Freeman Personal Bee Collection

description: Wild bees collected and curated by Jeff Freeman. Additional specimens from his collection are included in Leif Richardson's collection (https://www.gbif.org/dataset/cccd7d2f-33f5-4cc4-8076-6f2522befa92) and UVM's Zaddock Thompson Zoological Collection (https://www.gbif.org/dataset/d156cb49-ba5d-45fc-898e-3de6002d2efd).
DOI: 10.15468/dl.pssrm6
title: Occurrence Download

description: A dataset containing 2984314 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Bubulcus ibis (Linnaeus, 1758)"
 ]
}

 The dataset includes 2984314 records from 1381 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138877-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15161387
title: 호지 추측: 밀레니엄 난제에 도전한다.
DOI: 10.5281/zenodo.15161388
title: 호지 추측: 밀레니엄 난제에 도전한다.
DOI: 10.15468/dl.xdwh7n
title: Occurrence Download

description: A dataset containing 489 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eragrostis hispida K.Schum.",
 "Continent is Africa"
 ]
}

 The dataset includes 489 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017831-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10993246
title: Long-term adaptation of lymphoma cell lines to hypoxia is mediated by diverse molecular mechanisms that are targetable with specific inhibitors - Supplemental Data Tables

description: Supplemental Data Table - Metabolome.xlsx - a complete list of measured metabolites for Ramos and HBL2 cell lines. Peak area values for normoxic and hypoxia-adapted cells in triplicates. Mean log 2 fold change and adjusted P values are provided for all metabolites except those under the limits of detection.

Supplemental Data Table - Transcriptome Differential Expression.xlsx - the tables of all transcripts detected in hypoxia-adapted HBL2 and Ramos lymphoma cell lines compared to normoxic controls. Fold change and log 2 fold change, log 2 CPM, F statistic, P value and False Discovery Rate (FDR) were calculated using EdgeR package. Last column shows if a transcript was significantly up- or downregulated or not (ns).

Supplemental Data Table - Transcriptome Gene Set Analysis.xlsx - the tables of the gene set enrichment analysis of Reactome pathways in hypoxia-adapted HBL2 and Ramos lymphoma cell lines compared to normoxic controls.

Supplemental Data Table - Proteome Differential Expression.xlsx - the tables of proteins detected and differentially expressed in hypoxia-adapted HBL2 and Ramos lymphoma cell lines compared to normoxic controls.

Supplemental Data Table - Cell lines SNV characterization.xlsx - the tables of mutations (single nucleotide variations and short indels) detected in four tested lymphpoma cell lines and corresponding primary tumor (PT) samples. AF_CTRL - allelic frequency (0..1) in healthy control DNA from the patient, AF_PT - allelic frequency in primary tumor, AF_PDCL - allelic frequency in patient-derived cell line. DP - total sequence depth, TLOD - Log odds that the variant is present in the tumor sample relative to the expected noise. Gencode and HGNC annotation columns are output of the Funcotator analysis. SNVs were detected using Mutect2 as a part of GATK 4.6.0.0 somatic variat calling pipeline.
DOI: 10.5281/zenodo.10993247
title: Long-term adaptation of lymphoma cells to hypoxia is mediated by diverse molecular mechanisms that are targetable with specific inhibitors - Supplemental Data Tables

description: Supplemental Data Table Transcriptome Differential.xlsx - the tables of all transcripts differentially expressed in hypoxia-adapted HBL2 and Ramos lymphoma cell lines compared to normoxic controls.

Supplemental Data Table Transcriptome Gene Set Analysis.xlsx - the tables of the gene set enrichment analysis of Reactome pathways in hypoxia-adapted HBL2 and Ramos lymphoma cell lines compared to normoxic controls.

Supplemental Data Table Proteome.xlsx - the tables of proteins detected and differentially expressed in hypoxia-adapted HBL2 and Ramos lymphoma cell lines compared to normoxic controls.
DOI: 10.5281/zenodo.14012841
title: Long-term adaptation of lymphoma cell lines to hypoxia is mediated by diverse molecular mechanisms that are targetable with specific inhibitors - Supplemental Data Tables

description: Supplemental Data Table - Metabolome.xlsx - a complete list of measured metabolites for Ramos and HBL2 cell lines. Peak area values for normoxic and hypoxia-adapted cells in triplicates. Mean log 2 fold change and adjusted P values are provided for all metabolites except those under the limits of detection.

Supplemental Data Table - Transcriptome Differential Expression.xlsx - the tables of all transcripts detected in hypoxia-adapted HBL2 and Ramos lymphoma cell lines compared to normoxic controls. Fold change and log 2 fold change, log 2 CPM, F statistic, P value and False Discovery Rate (FDR) were calculated using EdgeR package. Last column shows if a transcript was significantly up- or downregulated or not (ns).

Supplemental Data Table - Transcriptome Gene Set Analysis.xlsx - the tables of the gene set enrichment analysis of Reactome pathways in hypoxia-adapted HBL2 and Ramos lymphoma cell lines compared to normoxic controls.

Supplemental Data Table - Proteome Differential Expression.xlsx - the tables of proteins detected and differentially expressed in hypoxia-adapted HBL2 and Ramos lymphoma cell lines compared to normoxic controls.

Supplemental Data Table - Cell lines SNV characterization.xlsx - the tables of mutations (single nucleotide variations and short indels) detected in four tested lymphpoma cell lines and corresponding primary tumor (PT) samples. AF_CTRL - allelic frequency (0..1) in healthy control DNA from the patient, AF_PT - allelic frequency in primary tumor, AF_PDCL - allelic frequency in patient-derived cell line. DP - total sequence depth, TLOD - Log odds that the variant is present in the tumor sample relative to the expected noise. Gencode and HGNC annotation columns are output of the Funcotator analysis. SNVs were detected using Mutect2 as a part of GATK 4.6.0.0 somatic variat calling pipeline.
DOI: 10.5281/zenodo.14025726
title: Long-term adaptation of lymphoma cell lines to hypoxia is mediated by diverse molecular mechanisms that are targetable with specific inhibitors - Supplemental Data Tables

description: Supplemental Data Table - Metabolome.xlsx - a complete list of measured metabolites for Ramos and HBL2 cell lines. Peak area values for normoxic and hypoxia-adapted cells in triplicates. Mean log 2 fold change and adjusted P values are provided for all metabolites except those under the limits of detection.

Supplemental Data Table - Transcriptome Differential Expression.xlsx - the tables of all transcripts detected in hypoxia-adapted HBL2 and Ramos lymphoma cell lines compared to normoxic controls. Fold change and log 2 fold change, log 2 CPM, F statistic, P value and False Discovery Rate (FDR) were calculated using EdgeR package. Last column shows if a transcript was significantly up- or downregulated or not (ns).

Supplemental Data Table - Transcriptome Gene Set Analysis.xlsx - the tables of the gene set enrichment analysis of Reactome pathways in hypoxia-adapted HBL2 and Ramos lymphoma cell lines compared to normoxic controls.

Supplemental Data Table - Proteome Differential Expression.xlsx - the tables of proteins detected and differentially expressed in hypoxia-adapted HBL2 and Ramos lymphoma cell lines compared to normoxic controls.

Supplemental Data Table - Cell lines SNV characterization.xlsx - the tables of mutations (single nucleotide variations and short indels) detected in four tested lymphpoma cell lines and corresponding primary tumor (PT) samples. AF_CTRL - allelic frequency (0..1) in healthy control DNA from the patient, AF_PT - allelic frequency in primary tumor, AF_PDCL - allelic frequency in patient-derived cell line. DP - total sequence depth, TLOD - Log odds that the variant is present in the tumor sample relative to the expected noise. Gencode and HGNC annotation columns are output of the Funcotator analysis. SNVs were detected using Mutect2 as a part of GATK 4.6.0.0 somatic variat calling pipeline.
DOI: 10.5281/zenodo.14025746
title: Long-term adaptation of lymphoma cell lines to hypoxia is mediated by diverse molecular mechanisms that are targetable with specific inhibitors - Supplemental Data Tables

description: Supplemental Data Table - Metabolome.xlsx - a complete list of measured metabolites for Ramos and HBL2 cell lines. Peak area values for normoxic and hypoxia-adapted cells in triplicates. Mean log 2 fold change and adjusted P values are provided for all metabolites except those under the limits of detection.

Supplemental Data Table - Transcriptome Differential Expression.xlsx - the tables of all transcripts detected in hypoxia-adapted HBL2 and Ramos lymphoma cell lines compared to normoxic controls. Fold change and log 2 fold change, log 2 CPM, F statistic, P value and False Discovery Rate (FDR) were calculated using EdgeR package. Last column shows if a transcript was significantly up- or downregulated or not (ns).

Supplemental Data Table - Transcriptome Gene Set Analysis.xlsx - the tables of the gene set enrichment analysis of Reactome pathways in hypoxia-adapted HBL2 and Ramos lymphoma cell lines compared to normoxic controls.

Supplemental Data Table - Proteome Differential Expression.xlsx - the tables of proteins detected and differentially expressed in hypoxia-adapted HBL2 and Ramos lymphoma cell lines compared to normoxic controls.

Supplemental Data Table - Cell lines SNV characterization.xlsx - the tables of mutations (single nucleotide variations and short indels) detected in four tested lymphpoma cell lines and corresponding primary tumor (PT) samples. AF_CTRL - allelic frequency (0..1) in healthy control DNA from the patient, AF_PT - allelic frequency in primary tumor, AF_PDCL - allelic frequency in patient-derived cell line. DP - total sequence depth, TLOD - Log odds that the variant is present in the tumor sample relative to the expected noise. Gencode and HGNC annotation columns are output of the Funcotator analysis. SNVs were detected using Mutect2 as a part of GATK 4.6.0.0 somatic variat calling pipeline.
DOI: 10.15468/dl.7xt5qx
title: Occurrence Download

description: A dataset containing 218 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eragrostis homomalla Nees",
 "Continent is Africa"
 ]
}

 The dataset includes 218 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017832-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p39c6j
title: Occurrence Download

description: A dataset containing 9987 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "Country is Germany",
 "GadmGid is DEU",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mantis religiosa (Linne, 1758)"
 ]
}

 The dataset includes 9987 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017833-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9781298
title: AI ethics, Zen principles, and the Socratic method
DOI: 10.15468/dl.frm3ze
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eragrostis huillensis Rendle",
 "Continent is Africa"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017834-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uhfmx8
title: Occurrence Download

description: A dataset containing 1729 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lycorma delicatula (White, 1845)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1981",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is one of (United States of America, Mexico, Canada)"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is one of (Chinese Taipei)"
 ]
 }
 }
 ]
}

 The dataset includes 1729 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017835-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kdmput
title: Occurrence Download

description: A dataset containing 932 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eragrostis inamoena K.Schum.",
 "Continent is Africa"
 ]
}

 The dataset includes 932 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017836-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18112/openneuro.ds004868.v1.0.2
title: [11C]PS13 demonstrates pharmacologically selective and substantial binding to cyclooxygenase-1 (COX-1) in the human brain
DOI: 10.15468/dl.653cjb
title: Occurrence Download

description: A dataset containing 217 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anas wyvilliana P.L.Sclater, 1878"
 ]
}

 The dataset includes 217 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017839-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.avyaz3
title: Occurrence Download

description: A dataset containing 1463 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eragrostis japonica (Thunb.) Trin.",
 "Continent is Africa"
 ]
}

 The dataset includes 1463 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017838-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2wpzrd
title: Occurrence Download

description: A dataset containing 651 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eragrostis lappula Nees",
 "Continent is Africa"
 ]
}

 The dataset includes 651 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017840-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tkb2kk
title: Occurrence Download

description: A dataset containing 1144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eragrostis lehmanniana Nees",
 "Continent is Africa"
 ]
}

 The dataset includes 1144 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017841-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9zb6bj
title: Occurrence Download

description: A dataset containing 353 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eragrostis macilenta (A.Rich.) Steud.",
 "Continent is Africa"
 ]
}

 The dataset includes 353 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017843-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4u7xz8
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes aegypti (Linnaeus, 1762)",
 "Country is Martinique",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 43 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017846-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jety6y
title: Occurrence Download

description: A dataset containing 10879 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hippopotamus amphibius Linnaeus, 1758"
 ]
}

 The dataset includes 10879 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017844-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.apa2k7
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eragrostis membranacea Hack. ex Schinz",
 "Continent is Africa"
 ]
}

 The dataset includes 27 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017847-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yujvdb
title: Occurrence Download

description: A dataset containing 183 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eragrostis micrantha Hack.",
 "Continent is Africa"
 ]
}

 The dataset includes 183 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017848-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yyb3mx
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Happywhale - Polar bear in Arctic Ocean"
 ]
}

 The dataset includes 31 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017849-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ud2rx
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eragrostis microsperma Rendle",
 "Continent is Africa"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017850-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2jyvey
title: Occurrence Download

description: A dataset listing the 3778 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Material sample, Material citation, Occurrence evidence)",
 "Country is Philippines",
 "OccurrenceStatus is Present",
 "TaxonKey is Lepidoptera"
 ]
}

 The dataset's 3778 records were derived from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017837-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kragda
title: Occurrence Download

description: A dataset containing 916 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eragrostis nindensis Ficalho & Hiern",
 "Continent is Africa"
 ]
}

 The dataset includes 916 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017851-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jxhbff
title: Occurrence Download

description: A dataset containing 1093 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lemur catta Linnaeus, 1758"
 ]
}

 The dataset includes 1093 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017853-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zb4ftf
title: Occurrence Download

description: A dataset containing 443 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-85.1342 34.00309,-79.22463 34.00309,-79.22463 37.03093,-85.1342 37.03093,-85.1342 34.00309))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ambystoma opacum (Gravenhorst, 1807)",
 "Year 2014-2024"
 ]
}

 The dataset includes 443 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017852-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14025759
title: Given Name Prevalence for Cumulative Gender Analysis

description: This dataset contains the 15000 most prominent given names from Wikidata and with their calculated prevalent gender based of the genders assigned to the people in Wikidata that have those names. As well as the software components and introduction to produce an updated version of this dataset at a later point.

Within the description of the TETTRIs Task 3.2 "Automatic mapping of taxonomic expertise", it is stated that for the various expert groups gender balance should be one of the factors to profile for. Since the analysis on the various groups should be done automatically, it is necessary to estimate the gender balance of a group without manual curation. One approach that we are considering is to do this estimate based on the given names of the identified experts. This repository lays the ground work for such an approach.

This is clearly a heuristical approach. The data from this repository is not to be used to assess the gender of any individual, but only to determine the gender balance amongst a group of people with room for statistical errors .

We are aware that this approach relies on many oversimplifications as well as biases in the underlying data and some of those biases and oversimplifications are addressed in the file README.md, included in the data set.