cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1270900.v9
title: Homes_USA

description: Information on how to get the raw sequencing data. Also OTU tables with taxonomic information, fasta files with representative sequences for each OTU, and metadata file.
DOI: 10.6084/m9.figshare.1270845
title: 2014 Publications

description: Registro Poblacional de Cancer Cali.
DOI: 10.6084/m9.figshare.1270845.v1
title: 2014 Publications

description: Registro Poblacional de Cancer Cali.
DOI: 10.6084/m9.figshare.1270760
title: SPP_CG_R

description: Sequencing file used for data analysis. See README.txt for more information.
DOI: 10.6084/m9.figshare.1270759
title: SPP_CG_F

description: Sequencing file used for data analysis. See README.txt for more information.
DOI: 10.6084/m9.figshare.1270779
title: Biometric and mobile devices

description: How do people react to using biometric in mobile devices for the use in online banking and other finance applications.
DOI: 10.6084/m9.figshare.1270759.v1
title: SPP_CG_F

description: Sequencing file used for data analysis. See README.txt for more information.
DOI: 10.6084/m9.figshare.1270760.v1
title: SPP_CG_R

description: Sequencing file used for data analysis. See README.txt for more information.
DOI: 10.6084/m9.figshare.1270758
title: QCP_PG_R

description: Sequencing file used for data analysis. See README.txt for more information.
DOI: 10.6084/m9.figshare.1270755
title: QCP_PG_F

description: Sequencing file used for data analysis. See README.txt for more information.
DOI: 10.6084/m9.figshare.1270756
title: QCP_CG_F

description: Sequencing file used for data analysis. See README.txt for more information.
DOI: 10.6084/m9.figshare.1270757
title: QCP_CG_R

description: Sequencing file used for data analysis. See README.txt for more information.
DOI: 10.6084/m9.figshare.1270758.v1
title: QCP_PG_R

description: Sequencing file used for data analysis. See README.txt for more information.
DOI: 10.6084/m9.figshare.1270755.v1
title: QCP_PG_F

description: Sequencing file used for data analysis. See README.txt for more information.
DOI: 10.6084/m9.figshare.1270756.v1
title: QCP_CG_F

description: Sequencing file used for data analysis. See README.txt for more information.
DOI: 10.6084/m9.figshare.1270757.v1
title: QCP_CG_R

description: Sequencing file used for data analysis. See README.txt for more information.
DOI: 10.6084/m9.figshare.1270687
title: A global compendium of human Crimean-Congo haemorrhagic fever virus occurrence

description: Each of the 1,720 rows represents a single occurrence record (one or more CCHF cases in the same unique location within a single calendar year). The fields contained in the database are as follows: OCCURRENCE_ID: Unique identifier for each occurrence in the database after temporal and locational standardisation.LOCATION_TYPE: Whether the record represents a point or a polygon location.ADMIN_LEVEL: The administrative level which the record represents when the location type is a polygon. Values are 1 (state or province), 2 (district) and -999 when the location type is a point.GAUL_AD1: The first-level GAUL code which identifies the Admin-1 level occurrences as well as the Admin-1 polygon within which any smaller polygons and points lie.GAUL_AD2: The second-level GAUL code which identifies the Admin-2 level occurrences as well as the Admin-2 polygon within which any points lie. Values of -999 are assigned when the polygon was Admin-1 level.UNIQUE_LOCATION: A unique identifier created for all locations (both points and polygons) based upon the unique point locations (in same 5km x 5km pixels) and the GAUL codes.X: The longitudinal coordinate of the point or polygon centroid (WGS1984 Datum).Y: The latitudinal coordinate of the point or polygon centroid (WGS1984 Datum).YEAR: The year of the occurrence. 10. COUNTRY: The name of the country within which the occurrence lies. 11. REGION: The region within which the occurrence lies – values are Asia, Europe, and Africa (includes the Arabian peninsula). In addition to the main comma-delimited file, three supplementary files are included as part of the file set which can be found online (Data Citation 1). These include two text documents: (i) a bibliography of the published literature used for inputting occurrence records, and (ii) a list of accession ID numbers for those records obtained from GenBank. The third supplementary file is an additional comma-delimited file containing the HealthMap records entered into the database( before standardization and technical validation). This database contains information on the year of each report, as well as the latitude and longitude of the disease occurrence and the source from which this information was extracted.
DOI: 10.6084/m9.figshare.1270687.v1
title: A global compendium of human Crimean-Congo haemorrhagic fever virus occurrence

description: Each of the 1,720 rows represents a single occurrence record (one or more CCHF cases in the same unique location within a single calendar year). The fields contained in the database are as follows: OCCURRENCE_ID: Unique identifier for each occurrence in the database after temporal and locational standardisation.LOCATION_TYPE: Whether the record represents a point or a polygon location.ADMIN_LEVEL: The administrative level which the record represents when the location type is a polygon. Values are 1 (state or province), 2 (district) and -999 when the location type is a point.GAUL_AD1: The first-level GAUL code which identifies the Admin-1 level occurrences as well as the Admin-1 polygon within which any smaller polygons and points lie.GAUL_AD2: The second-level GAUL code which identifies the Admin-2 level occurrences as well as the Admin-2 polygon within which any points lie. Values of -999 are assigned when the polygon was Admin-1 level.UNIQUE_LOCATION: A unique identifier created for all locations (both points and polygons) based upon the unique point locations (in same 5km x 5km pixels) and the GAUL codes.X: The longitudinal coordinate of the point or polygon centroid (WGS1984 Datum).Y: The latitudinal coordinate of the point or polygon centroid (WGS1984 Datum).YEAR: The year of the occurrence. 10. COUNTRY: The name of the country within which the occurrence lies. 11. REGION: The region within which the occurrence lies – values are Asia, Europe, and Africa (includes the Arabian peninsula).
DOI: 10.6084/m9.figshare.1270687.v2
title: A global compendium of human Crimean-Congo haemorrhagic fever virus occurrence

description: Each of the 1,720 rows represents a single occurrence record (one or more CCHF cases in the same unique location within a single calendar year). The fields contained in the database are as follows: OCCURRENCE_ID: Unique identifier for each occurrence in the database after temporal and locational standardisation.LOCATION_TYPE: Whether the record represents a point or a polygon location.ADMIN_LEVEL: The administrative level which the record represents when the location type is a polygon. Values are 1 (state or province), 2 (district) and -999 when the location type is a point.GAUL_AD1: The first-level GAUL code which identifies the Admin-1 level occurrences as well as the Admin-1 polygon within which any smaller polygons and points lie.GAUL_AD2: The second-level GAUL code which identifies the Admin-2 level occurrences as well as the Admin-2 polygon within which any points lie. Values of -999 are assigned when the polygon was Admin-1 level.UNIQUE_LOCATION: A unique identifier created for all locations (both points and polygons) based upon the unique point locations (in same 5km x 5km pixels) and the GAUL codes.X: The longitudinal coordinate of the point or polygon centroid (WGS1984 Datum).Y: The latitudinal coordinate of the point or polygon centroid (WGS1984 Datum).YEAR: The year of the occurrence. 10. COUNTRY: The name of the country within which the occurrence lies. 11. REGION: The region within which the occurrence lies – values are Asia, Europe, and Africa (includes the Arabian peninsula).
DOI: 10.6084/m9.figshare.1270623
title: Resting-state fmri data

description: preprocessed images for statistical analysis and masks used in the analyses
DOI: 10.6084/m9.figshare.1270687.v3
title: A global compendium of human Crimean-Congo haemorrhagic fever virus occurrence

description: Each of the 2,220 rows represents a single occurrence record (one or more CCHF cases in the same unique location within a single calendar year). The fields contained in the database are as follows: OCCURRENCE_ID: Unique identifier for each occurrence in the database after temporal and locational standardisation.LOCATION_TYPE: Whether the record represents a point or a polygon location.ADMIN_LEVEL: The administrative level which the record represents when the location type is a polygon. Values are 1 (state or province), 2 (district) and -999 when the location type is a point.GAUL_AD1: The first-level GAUL code which identifies the Admin-1 level occurrences as well as the Admin-1 polygon within which any smaller polygons and points lie.GAUL_AD2: The second-level GAUL code which identifies the Admin-2 level occurrences as well as the Admin-2 polygon within which any points lie. Values of -999 are assigned when the polygon was Admin-1 level.UNIQUE_LOCATION: A unique identifier created for all locations (both points and polygons) based upon the unique point locations (in same 5km x 5km pixels) and the GAUL codes.X: The longitudinal coordinate of the point or polygon centroid (WGS1984 Datum).Y: The latitudinal coordinate of the point or polygon centroid (WGS1984 Datum).YEAR: The year of the occurrence. 10. COUNTRY: The name of the country within which the occurrence lies. 11. REGION: The region within which the occurrence lies – values are Asia, Europe, and Africa (includes the Arabian peninsula).
DOI: 10.6084/m9.figshare.1270622
title: Demographic and clinical characteristics

description: Demographic and clinical characteristics
DOI: 10.6084/m9.figshare.1270623.v1
title: Resting-state fmri data

description: preprocessed images for statistical analysis and masks used in the analyses
DOI: 10.6084/m9.figshare.1270687.v4
title: A global compendium of human Crimean-Congo haemorrhagic fever virus occurrence

description: Each of the 2,220 rows represents a single occurrence record (one or more CCHF cases in the same unique location within a single calendar year). The fields contained in the database are as follows: OCCURRENCE_ID: Unique identifier for each occurrence in the database after temporal and locational standardisation.LOCATION_TYPE: Whether the record represents a point or a polygon location.ADMIN_LEVEL: The administrative level which the record represents when the location type is a polygon. Values are 1 (state or province), 2 (district) and -999 when the location type is a point.GAUL_AD1: The first-level GAUL code which identifies the Admin-1 level occurrences as well as the Admin-1 polygon within which any smaller polygons and points lie.GAUL_AD2: The second-level GAUL code which identifies the Admin-2 level occurrences as well as the Admin-2 polygon within which any points lie. Values of -999 are assigned when the polygon was Admin-1 level.UNIQUE_LOCATION: A unique identifier created for all locations (both points and polygons) based upon the unique point locations (in same 5km x 5km pixels) and the GAUL codes.X: The longitudinal coordinate of the point or polygon centroid (WGS1984 Datum).Y: The latitudinal coordinate of the point or polygon centroid (WGS1984 Datum).YEAR: The year of the occurrence. 10. COUNTRY: The name of the country within which the occurrence lies. 11. REGION: The region within which the occurrence lies – values are Asia, Europe, and Africa (includes the Arabian peninsula).
DOI: 10.6084/m9.figshare.1279394.v172
title: Early ovariectomy reveals a non-somatic origin of mammalian anti-A-reactive IgM that reflects developmental malignancy.

description: The germline encoding of a non-immune immunoglobulin M (IgM) molecule in mammals was experimentally documented for the first time as a result of the specifically timed ovariectomy of C57BL/10 mice. The target of this innate antibody involves a trans-species developmental antigen that signifies malignancy when expressed in any non-developmental tissue. Although ovariectomy and castration result in uncontrolled and/or enhanced humoral and cellular immunity involving increased weights of the spleen and thymus with pronounced B and T cell production, the development of mercaptoethanol-sensitive, complement-binding, non-immune anti-A reactivity in murine plasma was not enhanced after an ovariectomy that was performed in C57BL/10 mice prior to the onset of puberty. This non-immune murine anti-A, which is complementary to the trans-species, syngeneic ovarian GalNAc-glycan-bearing glycolipids and distinct from the cross-reactive adaptive anti-A antibody, was strongly downregulated or did not appear in plasma of animals ovariectomized at the age of 20 days. Thus, contrary to our previous view, this reactivity is unlikely to originate from a somatic, primary immune or autoimmune response. All of the murine tissues expressed the species-specific Forssman<i> </i>reactivity, and further A-like structures were identified in the male and female reproductive and endodermal organs by reaction with innate human anti-A antibody, while the murine anti-A was exclusively inhibited by syngeneic ovarian glycolipids. Moreover, the early ovarian tissue, which represents a last evolutionary and/or developmental location, showed a developmental polymorphism characterized by reactivity to the lectin from <i>Dolichos biflorus</i> and the agglutinin from <i>Helix pomatia </i>indicating the functional involvement of the <i>O</i>-GalNAc-determined mucin-type A-like, Tn- and Thomsen-Friedenreich (TF) epitopes that signify malignancy when accumulated and expressed in non-developmental tissues.
DOI: 10.6084/m9.figshare.1279394.v173
title: Early ovariectomy reveals a non-somatic origin of mammalian anti-A-reactive IgM that reflects developmental malignancy.

description: The germline encoding of a non-immune immunoglobulin M (IgM) molecule in mammals was experimentally documented for the first time as a result of the specifically timed ovariectomy of C57BL/10 mice. The target of this innate antibody involves a trans-species developmental antigen that signifies malignancy when expressed in any non-developmental tissue. Although ovariectomy and castration result in uncontrolled and/or enhanced humoral and cellular immunity involving increased weights of the spleen and thymus with pronounced B and T cell production, the development of mercaptoethanol-sensitive, complement-binding, non-immune anti-A reactivity in murine plasma was not enhanced after an ovariectomy that was performed in C57BL/10 mice prior to the onset of puberty. This non-immune murine anti-A, which is complementary to the trans-species, syngeneic ovarian GalNAc-glycan-bearing glycolipids and distinct from the cross-reactive adaptive anti-A antibody, was strongly downregulated or did not appear in plasma of animals ovariectomized at the age of 20 days. Thus, contrary to our previous view, this reactivity is unlikely to originate from a somatic, primary immune or autoimmune response. All of the murine tissues expressed the species-specific Forssman<i> </i>reactivity, and further A-like structures were identified in the male and female reproductive and endodermal organs by reaction with innate human anti-A antibody, while the murine anti-A was exclusively inhibited by syngeneic ovarian glycolipids. Moreover, the early ovarian tissue, which represents a last evolutionary and/or developmental location, showed a developmental polymorphism characterized by reactivity to the lectin from <i>Dolichos biflorus</i> and the agglutinin from <i>Helix pomatia </i>indicating the functional involvement of the <i>O</i>-GalNAc-determined mucin-type A-like, Tn- and Thomsen-Friedenreich (TF) epitopes that signify malignancy when accumulated and expressed in non-developmental tissues.
DOI: 10.6084/m9.figshare.1279394.v174
title: Early ovariectomy reveals a non-somatic origin of the mammalian anti-A-reactive IgM that reflects developmental malignancy.

description: The germline encoding of a non-immune immunoglobulin M (IgM) molecule in mammals was experimentally documented for the first time as a result of the specifically timed ovariectomy of C57BL/10 mice. The target of this innate antibody involves a trans-species developmental antigen that signifies malignancy when expressed in any non-developmental tissue. Although ovariectomy and castration result in uncontrolled and/or enhanced humoral and cellular immunity involving increased weights of the spleen and thymus with pronounced B and T cell production, the development of mercaptoethanol-sensitive, complement-binding, non-immune anti-A reactivity in murine plasma was not enhanced after an ovariectomy that was performed in C57BL/10 mice prior to the onset of puberty. This non-immune murine anti-A, which is complementary to the trans-species, syngeneic ovarian GalNAc-glycan-bearing glycolipids and distinct from the cross-reactive adaptive anti-A antibody, was strongly downregulated or did not appear in plasma of animals ovariectomized at the age of 20 days. Thus, contrary to our previous view, this reactivity is unlikely to originate from a somatic, primary immune or autoimmune response. All of the murine tissues expressed the species-specific Forssman<i> </i>reactivity, and further A-like structures were identified in the male and female reproductive and endodermal organs by reaction with innate human anti-A antibody, while the murine anti-A was exclusively inhibited by syngeneic ovarian glycolipids. Moreover, the early ovarian tissue, which represents a last evolutionary and/or developmental location, showed a developmental polymorphism characterized by reactivity to the lectin from <i>Dolichos biflorus</i> and the agglutinin from <i>Helix pomatia </i>indicating the functional involvement of the <i>O</i>-GalNAc-determined mucin-type A-like, Tn- and Thomsen-Friedenreich (TF) epitopes that signify malignancy when accumulated and expressed in non-developmental tissues.
DOI: 10.6084/m9.figshare.22613410
title: Additional file 3 of Chromatin accessibility illuminates single-cell regulatory dynamics of rice root tips

description: Additional file 3: Table S10: Enriched TF motifs in differential ACRs upon heat stress for each cluster. (XLS 403 kb)
DOI: 10.6084/m9.figshare.22613612
title: Additional file 5 of Characteristics of hospitalized patients with COVID-19 during the first to fifth waves of infection: a report from the Japan COVID-19 Task Force

description: Additional file 5. Supplementary Table 5. Clinical characteristics of Japanese COVID-19 patients by infection waves with p value.
DOI: 10.6084/m9.figshare.22613606
title: Additional file 3 of Characteristics of hospitalized patients with COVID-19 during the first to fifth waves of infection: a report from the Japan COVID-19 Task Force

description: Additional file 3. Supplementary Table 3. Comparison of severity of COVID-19 patients.
DOI: 10.6084/m9.figshare.22613407.v1
title: Additional file 2 of Chromatin accessibility illuminates single-cell regulatory dynamics of rice root tips

description: Additional file 2: Table S2: Marker genes of each cluster. Table S3: ACRs of each cluster for Normal and HS. Table S4: List of genes with open chromatin accessibility but low/no expression. Table S5: List of genes with close chromatin accessibility but high expression. Table S6: List of overlapped marker genes between scRNA-seq and scATAC-seq. Table S7: List of GO terms for genes associated with cluster specific ACRs. Table S8: ACRs and corresponding genes detected in the bulk ATAC-seq experiment for Normal. Table S9: ACRs and corresponding genes detected in the bulk ATAC-seq experiment for HS.
DOI: 10.6084/m9.figshare.22613410.v1
title: Additional file 3 of Chromatin accessibility illuminates single-cell regulatory dynamics of rice root tips

description: Additional file 3: Table S10: Enriched TF motifs in differential ACRs upon heat stress for each cluster. (XLS 403 kb)
DOI: 10.6084/m9.figshare.22613612.v1
title: Additional file 5 of Characteristics of hospitalized patients with COVID-19 during the first to fifth waves of infection: a report from the Japan COVID-19 Task Force

description: Additional file 5. Supplementary Table 5. Clinical characteristics of Japanese COVID-19 patients by infection waves with p value.
DOI: 10.6084/m9.figshare.22613366.v1
title: Additional file 9 of Identification and characterization of non-coding RNA networks in infected macrophages revealing the pathogenesis of F. nucleatum-associated diseases

description: Additional file 9: Supplementary Table 9. All identified circRNAs in RNA-Seq.
DOI: 10.6084/m9.figshare.22613366
title: Additional file 9 of Identification and characterization of non-coding RNA networks in infected macrophages revealing the pathogenesis of F. nucleatum-associated diseases

description: Additional file 9: Supplementary Table 9. All identified circRNAs in RNA-Seq.
DOI: 10.6084/m9.figshare.22613369.v1
title: Additional file 10 of Identification and characterization of non-coding RNA networks in infected macrophages revealing the pathogenesis of F. nucleatum-associated diseases

description: Additional file 10: Supplementary Table 10. Differentially expressed lncRNAs screened by RNA-Seq.
DOI: 10.6084/m9.figshare.12127794
title: DNA demethylation is a driver for chick retina regeneration

description: Cellular reprogramming resets the epigenetic landscape to drive shifts in transcriptional programmes and cell identity. The embryonic chick can regenerate a complete neural retina, after retinectomy, via retinal pigment epithelium (RPE) reprogramming in the presence of FGF2. In this study, we systematically analysed the reprogramming competent chick RPE prior to injury, and during different stages of reprogramming. In addition to changes in the expression of genes associated with epigenetic modifications during RPE reprogramming, we observed dynamic changes in histone marks associated with bivalent chromatin (H3K27me3/H3K4me3) and intermediates of the process of DNA demethylation including 5hmC and 5caC. Comprehensive analysis of the methylome by whole-genome bisulphite sequencing (WGBS) confirmed extensive rearrangements of DNA methylation patterns including differentially methylated regions (DMRs) found at promoters of genes associated with chromatin organization and fibroblast growth factor production. We also identified Tet methylcytosine dioxygenase 3 (TET3) as an important factor for DNA demethylation and retina regeneration, capable of reprogramming RPE in the absence of exogenous FGF2. In conclusion, we demonstrate that injury early in RPE reprogramming triggers genome-wide dynamic changes in chromatin, including bivalent chromatin and DNA methylation. In the presence of FGF2, these dynamic modifications are further sustained in the commitment to form a new retina. Our findings reveal active DNA demethylation as an important process that may be applied to remove the epigenetic barriers in order to regenerate retina in mammals. bp: Base pair; DMR: Differentially methylated region; DMC: Differentially methylated cytosines; GFP: Green fluorescent protein; PCR: Polymerase chain reaction. TET: Ten-eleven translocation; RPE: retinal pigment epithelium.
DOI: 10.6084/m9.figshare.22613606.v1
title: Additional file 3 of Characteristics of hospitalized patients with COVID-19 during the first to fifth waves of infection: a report from the Japan COVID-19 Task Force

description: Additional file 3. Supplementary Table 3. Comparison of severity of COVID-19 patients.