cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12307910.v1
title: Additional file 3 of Development of nuclear SSR and chloroplast genome markers in diverse Liriodendron chinense germplasm based on low-coverage whole genome sequencing

description: Additional file 3: Table S3. SSRs identified from in silico comparative analysis of the chloroplast genomes of four L. chinense genotypes.
DOI: 10.6084/m9.figshare.12307913.v1
title: Additional file 4 of Development of nuclear SSR and chloroplast genome markers in diverse Liriodendron chinense germplasm based on low-coverage whole genome sequencing

description: Additional file 4: Table S4. Primers of small inversions.
DOI: 10.6084/m9.figshare.18585864
title: Additional file 8 of SLCO4A1-AS1 promotes colorectal tumourigenesis by regulating Cdk2/c-Myc signalling

description: Additional file 8: Table S6. A total of 754 regulated DEGs (|logFC|≧0.5) selected after both overexpression and knockdown of SLCO4A1-AS1 in two independent RNA sequencing data sets.
DOI: 10.6084/m9.figshare.6540659.v1
title: Additional file 9: of UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study

description: Table S6. Genetic maps comprising all markers. (XLSX 717Â kb)
DOI: 10.6084/m9.figshare.8113496.v1
title: Additional file 6: of Carbohydrate metabolism and fertility related genes high expression levels promote heterosis in autotetraploid rice harboring double neutral genes

description: Table S4. Quality of RNA sequencing data and information of reads aligned to the Nipponbare reference genome. (XLSX 17 kb)
DOI: 10.5281/zenodo.7716838
title: IXI CAT preprocessed data

description: The files include feature spaces derived from voxel-wise gray matter volumes from the IXI dataset (https://brain-development.org/ixi-dataset/). T1-weighted images were preprocessed using Computational Anatomy Toolbox (CAT) version 12.8 (https://neuro-jena.github.io/cat/) and normalized gray matter segments (linear and non-linearly modulated) were used to calculate features. First, a whole-brain mask was used to select 238,955 voxels. Then, smoothing (S) with either 4 or 8 mm FWHM Gaussian kernel and resampling (R) using linear interpolation to 4 or 8 mm spatial resolution was applied (S4_R4: 29,852 features and S4_R8: 3747 features).

IXI data is made available under the Creative Commons CC BY-SA 4.0 International license. If you use these features/data please acknowledge the source of the IXI data i.e., https://brain-development.org/ixi-dataset/.
DOI: 10.6084/m9.figshare.12307997
title: Additional file 1 of Genome-wide variations analysis of sorghum cultivar Hongyingzi for brewing Moutai liquor

description: Additional file 1: Figure S1 and Figure S2.
DOI: 10.6084/m9.figshare.8113682
title: Additional file 4 of miRspongeR: an R/Bioconductor package for the identification and analysis of miRNA sponge interaction networks and modules

description: The number of significantly enriched terms in each BRCA-related miRNA sponge module using FN, MCL, LINKCOMM and MCODE. The significantly enriched terms contain DO, DGN, NCG, GO, KEGG and Reactome terms. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8637926
title: Additional file 2: of Qianggan extract improved nonalcoholic steatohepatitis by modulating lncRNA/circRNA immune ceRNA networks

description: Detailed information of DElncRNAs among groups. Sheet1: The 5692 DElncRNAs in MCD vs normal group. Sheet2: The 1182 DElncRNAs in in QG vs MCD group. Sheet3: The overlapped 259 DElncRNAs between MCD vs normal and QG vs MCD. (XLSX 453 kb)
DOI: 10.6084/m9.figshare.12308009.v1
title: Additional file 3 of Genome-wide variations analysis of sorghum cultivar Hongyingzi for brewing Moutai liquor

description: Additional file 3: Figure S5 and Figure S6.
DOI: 10.6084/m9.figshare.8113496
title: Additional file 6: of Carbohydrate metabolism and fertility related genes high expression levels promote heterosis in autotetraploid rice harboring double neutral genes

description: Table S4. Quality of RNA sequencing data and information of reads aligned to the Nipponbare reference genome. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8113664.v1
title: Additional file 2 of miRspongeR: an R/Bioconductor package for the identification and analysis of miRNA sponge interaction networks and modules

description: The predicted miRNA sponge interactions by the 8 built-in methods. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.8637914.v1
title: Additional file 1: of Qianggan extract improved nonalcoholic steatohepatitis by modulating lncRNA/circRNA immune ceRNA networks

description: Detailed information of DEGs among groups. Sheet1: The 6193 DEGs in MCD vs normal group. Sheet2: The 514 DEGs in in QG vs MCD group. Sheet3: The overlapped 244 DEGs between MCD vs normal and QG vs MCD. (XLSX 545 kb)
DOI: 10.6084/m9.figshare.6540632
title: Additional file 7: of UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study

description: Table S4. Comparison of SNPs identified by UGbS-Flex and GBS-SNP-CROP. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.8637935
title: Additional file 4: of Qianggan extract improved nonalcoholic steatohepatitis by modulating lncRNA/circRNA immune ceRNA networks

description: Detailed information of GO germs and KEGG pathways. Sheet1: GO terms. Sheet2: KEGG pathways. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.6540641
title: Additional file 8: of UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study

description: Table S5. Genotypic data for the MD-20 x Okhale-1 population. (XLSX 2444 kb)
DOI: 10.6084/m9.figshare.12307997.v1
title: Additional file 1 of Genome-wide variations analysis of sorghum cultivar Hongyingzi for brewing Moutai liquor

description: Additional file 1: Figure S1 and Figure S2.
DOI: 10.6084/m9.figshare.6540641.v1
title: Additional file 8: of UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study

description: Table S5. Genotypic data for the MD-20 x Okhale-1 population. (XLSX 2444 kb)
DOI: 10.6084/m9.figshare.8637926.v1
title: Additional file 2: of Qianggan extract improved nonalcoholic steatohepatitis by modulating lncRNA/circRNA immune ceRNA networks

description: Detailed information of DElncRNAs among groups. Sheet1: The 5692 DElncRNAs in MCD vs normal group. Sheet2: The 1182 DElncRNAs in in QG vs MCD group. Sheet3: The overlapped 259 DElncRNAs between MCD vs normal and QG vs MCD. (XLSX 453 kb)
DOI: 10.6084/m9.figshare.6540659
title: Additional file 9: of UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study

description: Table S6. Genetic maps comprising all markers. (XLSX 717Â kb)
DOI: 10.6084/m9.figshare.6540683.v1
title: Additional file 9: of Genome-wide analysis of long non-coding RNAs affecting roots development at an early stage in the rice response to cadmium stress

description: Table S5. The differentially expressed mRNAs by lncRNA-seq. (XLS 831 kb)
DOI: 10.5281/zenodo.10658339
title: A Parsec-Scale Galactic 3D Dust Map out to 1.25 kpc from the Sun -- Dataset for the 1.25 kpc 3D Dust Map and the 2 kpc 3D Dust Map

description: Accompanying data products for Edenhofer et al. (2023).
DOI: 10.5281/zenodo.8187942
title: A Parsec-Scale Galactic 3D Dust Map out to 1.25 kpc from the Sun -- Dataset for the 1.25 kpc 3D Dust Map and the 2 kpc 3D Dust Map

description: Accompanying data products for Edenhofer et al. (2023).
DOI: 10.6084/m9.figshare.12307910
title: Additional file 3 of Development of nuclear SSR and chloroplast genome markers in diverse Liriodendron chinense germplasm based on low-coverage whole genome sequencing

description: Additional file 3: Table S3. SSRs identified from in silico comparative analysis of the chloroplast genomes of four L. chinense genotypes.
DOI: 10.6084/m9.figshare.8113844
title: Additional file 4: of Comparative study of the mycorrhizal root transcriptomes of wild and cultivated rice in response to the pathogen Magnaporthe oryzae

description: Table S3. KEGG analysis of the response of Rhizoglomus intraradices-inoculated wild rice plants to infection by Magnaporthe oryzae in the ‘Wp+R vs. Wp’ (a) and ‘Cp+R vs. Cp’ (b) comparisons. Cp + R, AMF-inoculated cultivated rice infected with M. oryzae; Cp, AMF-uninoculated cultivated rice infected with M. oryzae; Wp + R, AMF-inoculated wild rice infected with M. oryzae; Wp, AMF-uninoculated wild rice infected with M. oryzae. (XLS 63 kb)
DOI: 10.6084/m9.figshare.12307832
title: Additional file 1 of MicroRNA-214 modulates the senescence of vascular smooth muscle cells in carotid artery stenosis

description: Additional file 1: Supplemental materials and methods. Figure S1. MicroRNA-214-3p (miR-214) modulates the snenecence of human aortic smooth muscle cells induced by hypoxia. (A) The cellular and exosomal miR-214 in CoC2 treated HASMCs after 48 h (n = 5). (B,D) Representative western blots depicting quaking, TERF1, TERF2, p16INK4, and pRB expression in miR-214 mimic and miR-214 antagomiR transfected HASMCs (n = 3). (C,E) Normalized expressions of quaking, TERF1, TERF2, p16INK4, and pRB (n = 3). (F,H) Senescence-associated β-galactosidase staining demonstrating senescence in miR-214 mimic and miR-214 antagomiR transfected HASMCs. (G,I) Bar graphs show quantification of relative of SA-β-gal positive cells (n = 3). (J,L) Immunofluorescent staining showing the number of Ki-67 positive cells (pink; shown by white arrow) in miR-214 mimic and miR-214 antagomiR transfected HASMCs. (K,M) Bar graphs show quantification of relative of Ki-67 positive cells (n = 3). Bar, 100 μm. Data are presented as the means ± SEM. * P &lt; 0.05; ** P &lt; 0.01 (Two-tailed Student’s t-test).
DOI: 10.6084/m9.figshare.12307907.v1
title: Additional file 2 of Development of nuclear SSR and chloroplast genome markers in diverse Liriodendron chinense germplasm based on low-coverage whole genome sequencing

description: Additional file 2: Table S2. Primers of Indels markers in the L. chinense chloroplast genome.
DOI: 10.6084/m9.figshare.8637932
title: Additional file 3: of Qianggan extract improved nonalcoholic steatohepatitis by modulating lncRNA/circRNA immune ceRNA networks

description: Detailed information of DEcircRNAs among groups. Sheet1: The 4843 DEcircRNAs in MCD vs normal group. Sheet2: The 443 DEcircRNAs in in QG vs MCD group. Sheet3: The overlapped 98 DEcircRNAs between MCD vs normal and QG vs MCD. (XLSX 349 kb)
DOI: 10.6084/m9.figshare.8637932.v1
title: Additional file 3: of Qianggan extract improved nonalcoholic steatohepatitis by modulating lncRNA/circRNA immune ceRNA networks

description: Detailed information of DEcircRNAs among groups. Sheet1: The 4843 DEcircRNAs in MCD vs normal group. Sheet2: The 443 DEcircRNAs in in QG vs MCD group. Sheet3: The overlapped 98 DEcircRNAs between MCD vs normal and QG vs MCD. (XLSX 349 kb)
DOI: 10.6084/m9.figshare.8637944.v1
title: Additional file 5: of Qianggan extract improved nonalcoholic steatohepatitis by modulating lncRNA/circRNA immune ceRNA networks

description: Detailed information of predicted miRNAs for DEGs, DElncRNAs and DEcircRNAs. Sheet1: The predicted miRNAs for DEGs. Sheet2: The predicted miRNAs for DElncRNAs. Sheet3: The predicted miRNAs for DEcircRNAs. (XLSX 771 kb)
DOI: 10.6084/m9.figshare.9162698.v1
title: Additional file 1: of Lactobacillus plantarum C88 protects against aflatoxin B1-induced liver injury in mice via inhibition of NF-ÎşBâ mediated inflammatory responses and excessive apoptosis

description: The raw datas of biochemical parameters in serum, include ALT, AST, ALP, total cholesterol, triglycerides, total protein and albumin. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.9162704
title: Additional file 2: of Lactobacillus plantarum C88 protects against aflatoxin B1-induced liver injury in mice via inhibition of NF-κB–mediated inflammatory responses and excessive apoptosis

description: The raw datas of IL-1β, IL-6, IL-8, IL-10, IFN-γ, and TNF-α in serum. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.8113661
title: Additional file 1 of miRspongeR: an R/Bioconductor package for the identification and analysis of miRNA sponge interaction networks and modules

description: The used running R scripts for reproducing the results of the case study. (R 4 kb)
DOI: 10.6084/m9.figshare.8637914
title: Additional file 1: of Qianggan extract improved nonalcoholic steatohepatitis by modulating lncRNA/circRNA immune ceRNA networks

description: Detailed information of DEGs among groups. Sheet1: The 6193 DEGs in MCD vs normal group. Sheet2: The 514 DEGs in in QG vs MCD group. Sheet3: The overlapped 244 DEGs between MCD vs normal and QG vs MCD. (XLSX 545 kb)
DOI: 10.5281/zenodo.10439644
title: GSI Tutorial associated data

description: This record includes the two main datasets necessary to run the GSI tutorial presented here:

GUESS

The 10-member ensemble background files generated using the WRF-ARW numerical model for a regional domain centered in the center and northern Argentina. For more information about the model configuration see https://doi.org/10.1016/j.atmosres.2022.106456



The 00 subfolder includes a 10-member ensemble and the ensemble mean to run the GSI system using the ENKF version. 

The 01 to 10 subfolders include the background at the analysis time and files every 10 minutes inside the assimilation window to run the GSI system using the fGAT method.


OBS

Meteorological observations in bufr format.



cimap.20181122.t12z.01h.prepbufr.nqc is derived from a prepbufr file available at https://rda.ucar.edu/datasets/ds337.0 plus observations from private automatic meteorological weather networks in Argentina.

abig16.20181122.t12z.bufr_d was generated using GOES-16 data available at: 

The other radiance observations comes from the Global Data Assimilation System (GDAS) Model: https://www.nco.ncep.noaa.gov/pmb/products/gfs/



1bamua.20181122.t12z.bufr_d

ssmisu.20181122.t12z.bufr_d

1bhrs4.20181122.t12z.bufr_d

airsev.20181122.t12z.bufr_d  

mtiasi.20181122.t12z.bufr_d

1bmhs.20181122.t12z.bufr_d  

atms.20181122.t12z.bufr_d    

satwnd.20181122.t12z.bufr_d
DOI: 10.5281/zenodo.10439645
title: GSI Tutorial associated data

description: This record includes the two main datasets necessary to run the GSI tutorial presented here:

GUESS

The 10-member ensemble background files generated using the WRF-ARW numerical model for a regional domain centered in the center and northern Argentina. For more information about the model configuration see https://doi.org/10.1016/j.atmosres.2022.106456



The 00 subfolder includes a 10-member ensemble and the ensemble mean to run the GSI system using the ENKF version. 

The 01 to 10 subfolders include the background at the analysis time and files every 10 minutes inside the assimilation window to run the GSI system using the fGAT method.


OBS

Meteorological observations in bufr format.



cimap.20181122.t12z.01h.prepbufr.nqc is derived from a prepbufr file available at https://rda.ucar.edu/datasets/ds337.0 plus observations from private automatic meteorological weather networks in Argentina.

abig16.20181122.t12z.bufr_d was generated using GOES-16 data available at: 

The other radiance observations comes from the Global Data Assimilation System (GDAS) Model: https://www.nco.ncep.noaa.gov/pmb/products/gfs/



1bamua.20181122.t12z.bufr_d

ssmisu.20181122.t12z.bufr_d

1bhrs4.20181122.t12z.bufr_d

airsev.20181122.t12z.bufr_d  

mtiasi.20181122.t12z.bufr_d

1bmhs.20181122.t12z.bufr_d  

atms.20181122.t12z.bufr_d    

satwnd.20181122.t12z.bufr_d
DOI: 10.6084/m9.figshare.12308000
title: Additional file 2 of Genome-wide variations analysis of sorghum cultivar Hongyingzi for brewing Moutai liquor

description: Additional file 2: Figure S3 and Figure S4.
DOI: 10.3886/icpsr06573.v1
title: Minimal Hearing Loss in Children, 1991-1994: [Davidson County, Tennessee]
title: Version 1

description: The purpose of this survey and follow-up case-control study was to estimate the prevalence of minimal hearing loss in school-age children and to determine whether children with minimal hearing loss experienced any psychoeducational or functional complications. Third-, sixth-, ninth-, and eleventh-grade children were evaluated for hearing threshold levels and type of hearing loss, as well as middle ear function and associated abnormalities. The data include results from acoustic otoscope, diagnostic immittance, and GSI-37 auto tymp tests. The case-control data contain scores from the Comprehensive Tests of Basic Skills, scores from the Revised Behavior Problem Checklist, and other variables.
description: Datasets: 
 
 DS0: Study-Level Files 
 DS1: Audiology Results 
 DS2: GSI-37 Auto Tymp Results 
 DS3: History and COOP Results 
 DS4: Identification Information 
 DS5: Middle Ear Function Results 
 DS6: Otoscopic and Audioscopic Results 
 DS7: Consolidated Survey Data 
 DS8: Case-Control Data
description: The codebook refers to the original dataset numbers (part numbers) this study had before it was reorganized into eight datasets. In the original release, the study had separate datasets (parts) for the SAS versions of the data files which resulted in the following dataset numbers and titles: DS1: Audiology Results; DS2: SAS Transport File for Audiology Results; DS3: GSI-37 Auto Tymp Results; DS4: SAS Transport File for GSI-37 Auto Tymp Results; DS5: History and COOP Results; DS6: SAS Transport File for History and COOP Results; DS7: Identification Information; DS8: SAS Transport File for Identification Information; DS9: Middle Ear Function Results; DS10: SAS Transport File for Middle Ear Function Results; DS11: Otoscopic and Audioscopic Results; DS12: SAS Transport File for Otoscopic and Audioscopic Results; DS13: Consolidated Survey Data; DS14: SAS Transport File for Consolidated Survey Data; DS15: Case-Control Data; and DS16: SAS Transport File for Case-Control Data.
The survey files (Parts 1-12) can be linked by the ID variable at the beginning of each file.
The SAS transport files were generated by the SAS CPORT procedure.
description: School children attending public schools in Davidson County, Tennessee.
description: The survey was planned as a probability-proportional-to- size sample of schools.
DOI: 10.6084/m9.figshare.12307904
title: Additional file 1 of Development of nuclear SSR and chloroplast genome markers in diverse Liriodendron chinense germplasm based on low-coverage whole genome sequencing

description: Additional file 1: Table S1. Primers of SNP markers in the L. chinense chloroplast genome.
DOI: 10.6084/m9.figshare.8637935.v1
title: Additional file 4: of Qianggan extract improved nonalcoholic steatohepatitis by modulating lncRNA/circRNA immune ceRNA networks

description: Detailed information of GO germs and KEGG pathways. Sheet1: GO terms. Sheet2: KEGG pathways. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.8637944
title: Additional file 5: of Qianggan extract improved nonalcoholic steatohepatitis by modulating lncRNA/circRNA immune ceRNA networks

description: Detailed information of predicted miRNAs for DEGs, DElncRNAs and DEcircRNAs. Sheet1: The predicted miRNAs for DEGs. Sheet2: The predicted miRNAs for DElncRNAs. Sheet3: The predicted miRNAs for DEcircRNAs. (XLSX 771 kb)
DOI: 10.6084/m9.figshare.9162710
title: Additional file 3: of Lactobacillus plantarum C88 protects against aflatoxin B1-induced liver injury in mice via inhibition of NF-ÎşBâ mediated inflammatory responses and excessive apoptosis

description: The raw datas of Bax, Bcl-2 and Caspase-3 in liver. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.12308000.v1
title: Additional file 2 of Genome-wide variations analysis of sorghum cultivar Hongyingzi for brewing Moutai liquor

description: Additional file 2: Figure S3 and Figure S4.
DOI: 10.6084/m9.figshare.8113850
title: Additional file 5: of Comparative study of the mycorrhizal root transcriptomes of wild and cultivated rice in response to the pathogen Magnaporthe oryzae

description: Table S4. MapMan 3.6.0 analysis of biotic stress response for ß-glucanase (a), cell wall (b), JA (c) and SA (d) in AMF-inoculated wild and cultivated rice in response to infection by Magnaporthe oryzae in the ‘Wp+R vs. Wp’ and ‘Cp+R vs. Cp’ comparisons. Cp + R, AMF-inoculated cultivated rice infected with M. oryzae; Cp, AMF-uninoculated cultivated rice infected with M. oryzae; Wp + R, AMF-inoculated wild rice infected with M. oryzae; Wp, AMF-uninoculated wild rice infected with M. oryzae. SA, salicylic acid; JA, jasmonic acid. (XLS 93 kb)
DOI: 10.6084/m9.figshare.8113850.v1
title: Additional file 5: of Comparative study of the mycorrhizal root transcriptomes of wild and cultivated rice in response to the pathogen Magnaporthe oryzae

description: Table S4. MapMan 3.6.0 analysis of biotic stress response for ß-glucanase (a), cell wall (b), JA (c) and SA (d) in AMF-inoculated wild and cultivated rice in response to infection by Magnaporthe oryzae in the ‘Wp+R vs. Wp’ and ‘Cp+R vs. Cp’ comparisons. Cp + R, AMF-inoculated cultivated rice infected with M. oryzae; Cp, AMF-uninoculated cultivated rice infected with M. oryzae; Wp + R, AMF-inoculated wild rice infected with M. oryzae; Wp, AMF-uninoculated wild rice infected with M. oryzae. SA, salicylic acid; JA, jasmonic acid. (XLS 93 kb)
DOI: 10.6084/m9.figshare.8113859.v1
title: Additional file 6 of Comparative study of the mycorrhizal root transcriptomes of wild and cultivated rice in response to the pathogen Magnaporthe oryzae

description: Table S5. MapMan 3.6.0 analysis of secondary metabolic pathway response for shikimate pathway (a), MVA (b), simple phenols (c) and terpenoids (d) in AMF-inoculated wild and cultivated rice in response to infection by Magnaporthe oryzae in the ‘Wp+R vs. Wp’ and ‘Cp+R vs. Cp’ comparisons. Cp + R, AMF-inoculated cultivated rice infected with M. oryzae; Cp, AMF-uninoculated cultivated rice infected with M. oryzae; Wp + R, AMF-inoculated wild rice infected with M. oryzae; Wp, AMF-uninoculated wild rice infected with M. oryzae. MVA, mevalonate. (XLS 46 kb)
DOI: 10.6084/m9.figshare.8113682.v1
title: Additional file 4 of miRspongeR: an R/Bioconductor package for the identification and analysis of miRNA sponge interaction networks and modules

description: The number of significantly enriched terms in each BRCA-related miRNA sponge module using FN, MCL, LINKCOMM and MCODE. The significantly enriched terms contain DO, DGN, NCG, GO, KEGG and Reactome terms. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8113754.v1
title: MOESM3 of Enhancement of cellulase production in Trichoderma reesei RUT-C30 by comparative genomic screening

description: Additional file 3. Primers used in this study.