cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh3275276.08fu
title: SH3275276.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3275277.08fu
title: SH3275277.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.5878264.v1
title: Pan-European landslide susceptibility mapping: ELSUS Version 2

description: We present an updated version of the European landslide susceptibility map ELSUS 1000 released through the European Soil Data Centre in 2013. The ELSUS V2 map shows the landslide susceptibility zonation for individual climate-physiographic zones across Europe. ELSUS V2 covers a larger area of Europe than ELSUS 1000 at a higher spatial resolution (200 × 200 m). The updated map was prepared using the same semi-quantitative method as for ELSUS 1000, combining landslide frequency ratios information with a spatial multi-criteria evaluation model of three thematic predictors: slope angle, shallow subsurface lithology and land cover. However, the new map was prepared using also: (i) an extended landslide inventory, containing 30% of additional locations for model calibration, map validation and classification and (ii) a new lithological data set derived from the International Hydrogeological Map of Europe (IHME). The new version of the map increases the overall predictive performance of ELSUS by 8 %.
DOI: 10.6084/m9.figshare.5878264.v2
title: Pan-European landslide susceptibility mapping: ELSUS Version 2

description: We present an updated version of the European landslide susceptibility map ELSUS 1000 released through the European Soil Data Centre in 2013. The ELSUS V2 map shows the landslide susceptibility zonation for individual climate-physiographic zones across Europe. ELSUS V2 covers a larger area of Europe than ELSUS 1000 at a higher spatial resolution (200 × 200 m). The updated map was prepared using the same semi-quantitative method as for ELSUS 1000, combining landslide frequency ratios information with a spatial multi-criteria evaluation model of three thematic predictors: slope angle, shallow subsurface lithology and land cover. However, the new map was prepared using also: (i) an extended landslide inventory, containing 30% of additional locations for model calibration, map validation and classification and (ii) a new lithological data set derived from the International Hydrogeological Map of Europe (IHME). The new version of the map increases the overall predictive performance of ELSUS by 8 %.
DOI: 10.6084/m9.figshare.5878261
title: Scrub communities along a climatic gradient in the southern Balkans: maquis, pseudomaquis and shibljak

description: The research deals with three scrub communities/formations in the southern Balkans, maquis, pseudomaquis and shibljak, and their changes along the main (macro)ecological gradient. We performed DCA analysis and, since the first axis correlates with climatic data, the projection of relevés on this axis was accepted as proxy for the (macro)ecological gradient, and the species turnover along this gradient was elaborated. Linear regression was used to test the turnover of life forms, chorotypes and the life strategy of species (syntaxonomical affiliation). It was found that life forms, except hemicryptophytes and nanophanerophytes, do not change significantly along the gradient change; most chorotypes change significantly; among species, life strategies (syntaxonomical affiliation), the proportion of species of deciduous and evergreen forests and scrub, as well as species of dry grassland, change significantly. The classification established three clusters, representing three formations and we tested differences among them. It was established that stenomediterranean and Eurasian species and species of perennial grasslands differentiate all three clusters and some groups only two of them. We found that discontinuous formations can be established along a continuous gradient. Communities were also classified within the present synsystematic system.
DOI: 10.6084/m9.figshare.5878261.v1
title: Scrub communities along a climatic gradient in the southern Balkans: maquis, pseudomaquis and shibljak

description: The research deals with three scrub communities/formations in the southern Balkans, maquis, pseudomaquis and shibljak, and their changes along the main (macro)ecological gradient. We performed DCA analysis and, since the first axis correlates with climatic data, the projection of relevés on this axis was accepted as proxy for the (macro)ecological gradient, and the species turnover along this gradient was elaborated. Linear regression was used to test the turnover of life forms, chorotypes and the life strategy of species (syntaxonomical affiliation). It was found that life forms, except hemicryptophytes and nanophanerophytes, do not change significantly along the gradient change; most chorotypes change significantly; among species, life strategies (syntaxonomical affiliation), the proportion of species of deciduous and evergreen forests and scrub, as well as species of dry grassland, change significantly. The classification established three clusters, representing three formations and we tested differences among them. It was established that stenomediterranean and Eurasian species and species of perennial grasslands differentiate all three clusters and some groups only two of them. We found that discontinuous formations can be established along a continuous gradient. Communities were also classified within the present synsystematic system.
DOI: 10.6084/m9.figshare.5878249
title: Supplementary Material for: Endobronchial Treatment for Bronchial Carcinoid: Patient Selection and Predictors of Outcome

description: <b><i>Background:</i></b> Traditionally, surgical resection is the preferred treatment for typical carcinoids and atypical carcinoids located in the lungs. Recently however, several studies have shown excellent long-term outcome after endobronchial treatment of carcinoid tumors located in the central airways. This study investigates clinical and radiological features as predictors of successful endobronchial treatment in patients with a bronchial carcinoid tumor. <b><i>Objectives:</i></b> To identify clinical and radiological features predictive of successful endobronchial treatment in patients with bronchial carcinoid. <b><i>Methods:</i></b> This analysis was performed in a cohort of patients with typical and atypical bronchial carcinoid referred for endobronchial treatment. Several patient characteristics, radiological features, and histological grade (typical or atypical carcinoid) were tested as predictors of successful endobronchial treatment. <b><i>Results:</i></b> One hundred and twenty-five patients with a diagnosis of bronchial carcinoid underwent endobronchial treatment. On multivariate analysis, a tumor diameter &lt;15 mm (odds ratio 0.09; 95% confidence interval 0.02–0.5; <i>p</i> = &lt;0.01) and purely intraluminal growth on computer tomography (CT scan) (odds ratio, 9.1; 95% confidence interval 1.8–45.8; <i>p</i> = &lt;0.01) were predictive of radical endobronchial treatment. The success rate for intraluminal tumors with a diameter &lt;20 mm was 72%. <b><i>Conclusions:</i></b> Purely intraluminal disease and tumor diameter on CT scan seem to be independent predictors for successful endobronchial treatment in patients with bronchial carcinoid. Based on these data, patients with purely intraluminal carcinoid tumors with a diameter &lt;20 mm on CT scan are good candidates for endobronchial treatment, regardless of histological grade. In contrast, all patients with a tumor diameter ≥20 mm should be directly referred for surgery.
DOI: 10.6084/m9.figshare.5878249.v1
title: Supplementary Material for: Endobronchial Treatment for Bronchial Carcinoid: Patient Selection and Predictors of Outcome

description: <b><i>Background:</i></b> Traditionally, surgical resection is the preferred treatment for typical carcinoids and atypical carcinoids located in the lungs. Recently however, several studies have shown excellent long-term outcome after endobronchial treatment of carcinoid tumors located in the central airways. This study investigates clinical and radiological features as predictors of successful endobronchial treatment in patients with a bronchial carcinoid tumor. <b><i>Objectives:</i></b> To identify clinical and radiological features predictive of successful endobronchial treatment in patients with bronchial carcinoid. <b><i>Methods:</i></b> This analysis was performed in a cohort of patients with typical and atypical bronchial carcinoid referred for endobronchial treatment. Several patient characteristics, radiological features, and histological grade (typical or atypical carcinoid) were tested as predictors of successful endobronchial treatment. <b><i>Results:</i></b> One hundred and twenty-five patients with a diagnosis of bronchial carcinoid underwent endobronchial treatment. On multivariate analysis, a tumor diameter &lt;15 mm (odds ratio 0.09; 95% confidence interval 0.02–0.5; <i>p</i> = &lt;0.01) and purely intraluminal growth on computer tomography (CT scan) (odds ratio, 9.1; 95% confidence interval 1.8–45.8; <i>p</i> = &lt;0.01) were predictive of radical endobronchial treatment. The success rate for intraluminal tumors with a diameter &lt;20 mm was 72%. <b><i>Conclusions:</i></b> Purely intraluminal disease and tumor diameter on CT scan seem to be independent predictors for successful endobronchial treatment in patients with bronchial carcinoid. Based on these data, patients with purely intraluminal carcinoid tumors with a diameter &lt;20 mm on CT scan are good candidates for endobronchial treatment, regardless of histological grade. In contrast, all patients with a tumor diameter ≥20 mm should be directly referred for surgery.
DOI: 10.6084/m9.figshare.5878207
title: Cornus officinalis original vinegar

description: A high quality <i>Cornus officinalis</i> original vinegar was produced from fresh <i>Cornus officinalis</i> fruits using a two-step fermentation process (alcoholic fermentation 15 days followed by an acetic fermentation period of 7 days).
DOI: 10.6084/m9.figshare.5878207.v1
title: Cornus officinalis original vinegar

description: A high quality <i>Cornus officinalis</i> original vinegar was produced from fresh <i>Cornus officinalis</i> fruits using a two-step fermentation process (alcoholic fermentation 15 days followed by an acetic fermentation period of 7 days).
DOI: 10.6084/m9.figshare.5878132
title: Supplemental Material for DHBenelux paper

description: Two original student papers for the course "Digital Humanities in Practice" detailing the conversion of data to Linked Data (Steenmeijer & Schriever, 2018) and pattern-based data anlysis (Rensburg & Rubens, 2018). This is supplemental material to the "Linking Data on the Termination of Enemy Status" by Steenmeijer et al 2018
DOI: 10.6084/m9.figshare.5878132.v1
title: Supplemental Material for DHBenelux paper

description: Two original student papers for the course "Digital Humanities in Practice" detailing the conversion of data to Linked Data (Steenmeijer & Schriever, 2018) and pattern-based data anlysis (Rensburg & Rubens, 2018). This is supplemental material to the "Linking Data on the Termination of Enemy Status" by Steenmeijer et al 2018
DOI: 10.6084/m9.figshare.5878090
title: Table S2 from Expression profiling across wild and cultivated tomatoes supports the relevance of early miR482/2118 suppression for <i>Phytophthora</i> resistance

description: NBS-LRR targets of SlmiR482/2118
DOI: 10.6084/m9.figshare.5878090.v1
title: Table S2 from Expression profiling across wild and cultivated tomatoes supports the relevance of early miR482/2118 suppression for <i>Phytophthora</i> resistance

description: NBS-LRR targets of SlmiR482/2118
DOI: 10.6084/m9.figshare.5878030
title: Effects of statins on all-cause mortality at different low-density-lipoprotein cholesterol levels in Asian patients with type 2 diabetes

description: <b>Objective:</b> To investigate the effects of statins on all-cause mortality risk at different low-density lipoprotein cholesterol (LDL-C) levels, and to compare the mortality risk between statin users and non-users with identical LDL-C levels in a type 2 diabetes cohort. <b>Methods:</b> In total, 10,582 outpatients aged ≥18 years with type 2 diabetes mellitus (T2DM) between 2009 and 2012 were enrolled in this retrospective cohort study in central Taiwan. All-cause mortality events were followed up until the end of 2014. According to the medical records during the follow-up period, the patients were classified into statin (+) and statin (−) groups. Patients were categorized into different LDL-C segments based on their mean LDL-C levels during the 2.8-year follow-up. <b>Results:</b> Non-cardiovascular mortality accounted for more than half the deaths. Overall, statin therapy significantly reduced the all-cause mortality risk in both univariable and multivariable models (hazard ratios = 0.39 and 0.38, respectively). Sub-group analyses showed that the lowest mortality risk occurred in the 80–89 mg/dL segment in the statin (−) group and in the 90–99 mg/dL segment in the statin (+) group. Statin therapy significantly reduced the mortality risk at all LDL-C levels except for low LDL-C (&lt;60 mg/dL). <b>Conclusions:</b> In addition to reducing LDL-C levels, statin therapy reduced all-cause mortality risk in Taiwanese patients with T2DM. Statins further reduced the mortality risk at most LDL levels. However, at low LDL-C levels, the positive effects of statins may have been nullified.
DOI: 10.6084/m9.figshare.5878030.v1
title: Effects of statins on all-cause mortality at different low-density-lipoprotein cholesterol levels in Asian patients with type 2 diabetes

description: <b>Objective:</b> To investigate the effects of statins on all-cause mortality risk at different low-density lipoprotein cholesterol (LDL-C) levels, and to compare the mortality risk between statin users and non-users with identical LDL-C levels in a type 2 diabetes cohort. <b>Methods:</b> In total, 10,582 outpatients aged ≥18 years with type 2 diabetes mellitus (T2DM) between 2009 and 2012 were enrolled in this retrospective cohort study in central Taiwan. All-cause mortality events were followed up until the end of 2014. According to the medical records during the follow-up period, the patients were classified into statin (+) and statin (−) groups. Patients were categorized into different LDL-C segments based on their mean LDL-C levels during the 2.8-year follow-up. <b>Results:</b> Non-cardiovascular mortality accounted for more than half the deaths. Overall, statin therapy significantly reduced the all-cause mortality risk in both univariable and multivariable models (hazard ratios = 0.39 and 0.38, respectively). Sub-group analyses showed that the lowest mortality risk occurred in the 80–89 mg/dL segment in the statin (−) group and in the 90–99 mg/dL segment in the statin (+) group. Statin therapy significantly reduced the mortality risk at all LDL-C levels except for low LDL-C (&lt;60 mg/dL). <b>Conclusions:</b> In addition to reducing LDL-C levels, statin therapy reduced all-cause mortality risk in Taiwanese patients with T2DM. Statins further reduced the mortality risk at most LDL levels. However, at low LDL-C levels, the positive effects of statins may have been nullified.
DOI: 10.6084/m9.figshare.5878015
title: Two new megalonychid sloths (Mammalia: Xenarthra) from the Urumaco Formation (late Miocene), and their phylogenetic affinities

description: Here we describe two new megalonychid sloths from the late Miocene of the Urumaco Formation (Falcón State, Venezuela), <i>Urumacocnus urbanii</i> gen. et. sp. nov. and <i>Pattersonocnus diazgameroi</i> gen. et sp. nov. The recovery of these distinct taxa greatly improves our understanding of sloth diversity in the late Miocene of northern South America. A phylogenetic analysis based on the combination of cranial and postcranial elements (particularly the femur) partially supports previous interpretations of the relationships of genera within the Megalonychidae, but also suggests the existence of a more complex set of subclades within the family in South America, North America and the Antilles. http://zoobank.org/urn:lsid:zoobank.org:pub:594532F8-9E25-4282-B1AD-9FC5484DFD91
DOI: 10.6084/m9.figshare.5878015.v1
title: Two new megalonychid sloths (Mammalia: Xenarthra) from the Urumaco Formation (late Miocene), and their phylogenetic affinities

description: Here we describe two new megalonychid sloths from the late Miocene of the Urumaco Formation (Falcón State, Venezuela), <i>Urumacocnus urbanii</i> gen. et. sp. nov. and <i>Pattersonocnus diazgameroi</i> gen. et sp. nov. The recovery of these distinct taxa greatly improves our understanding of sloth diversity in the late Miocene of northern South America. A phylogenetic analysis based on the combination of cranial and postcranial elements (particularly the femur) partially supports previous interpretations of the relationships of genera within the Megalonychidae, but also suggests the existence of a more complex set of subclades within the family in South America, North America and the Antilles. http://zoobank.org/urn:lsid:zoobank.org:pub:594532F8-9E25-4282-B1AD-9FC5484DFD91
DOI: 10.6084/m9.figshare.5877985
title: Towards the simulation of biomolecules: optimisation of peptide-capped glycine using FFLUX

description: The optimisation of a peptide-capped glycine using the novel force field FFLUX is presented. FFLUX is a force field based on the machine-learning method kriging and the topological energy partitioning method called Interacting Quantum Atoms. FFLUX has a completely different architecture to that of traditional force fields, avoiding (harmonic) potentials for bonded, valence and torsion angles. In this study, FFLUX performs an optimisation on a glycine molecule and successfully recovers the target density-functional-theory energy with an error of 0<i>.</i>89 ± 0.03 kJ mol<sup>−1</sup>. It also recovers the structure of the global minimum with a <i>root</i>-<i>mean</i>-<i>squared deviation</i> of 0<i>.</i>05 Å (excluding hydrogen atoms). We also show that the geometry of the intra-molecular hydrogen bond in glycine is recovered accurately.
DOI: 10.6084/m9.figshare.5877985.v1
title: Towards the simulation of biomolecules: optimisation of peptide-capped glycine using FFLUX

description: The optimisation of a peptide-capped glycine using the novel force field FFLUX is presented. FFLUX is a force field based on the machine-learning method kriging and the topological energy partitioning method called Interacting Quantum Atoms. FFLUX has a completely different architecture to that of traditional force fields, avoiding (harmonic) potentials for bonded, valence and torsion angles. In this study, FFLUX performs an optimisation on a glycine molecule and successfully recovers the target density-functional-theory energy with an error of 0<i>.</i>89 ± 0.03 kJ mol<sup>−1</sup>. It also recovers the structure of the global minimum with a <i>root</i>-<i>mean</i>-<i>squared deviation</i> of 0<i>.</i>05 Å (excluding hydrogen atoms). We also show that the geometry of the intra-molecular hydrogen bond in glycine is recovered accurately.
DOI: 10.6084/m9.figshare.5877916
title: Begonia balangcodiae sp. nov. from northern Luzon, the Philippines and its natural hybrid with B. crispipila, B. × kapangan nothosp. nov., the first report of natural hybridization in sect. Petermannia

description: Begonia balangcodiae sp. nov. from northern Luzon, the Philippines and its natural hybrid with B. crispipila, B. × kapangan nothosp. nov., the first report of natural hybridization in Begonia sect. Petermannia
DOI: 10.6084/m9.figshare.5877916.v1
title: Begonia balangcodiae sp. nov. from northern Luzon, the Philippines and its natural hybrid with B. crispipila, B. × kapangan nothosp. nov., the first report of natural hybridization in Begonia sect. Petermannia

description: Begonia balangcodiae sp. nov. from northern Luzon, the Philippines and its natural hybrid with B. crispipila, B. × kapangan nothosp. nov., the first report of natural hybridization in Begonia sect. Petermannia
DOI: 10.6084/m9.figshare.5877916.v2
title: Begonia balangcodiae sp. nov. from northern Luzon, the Philippines and its natural hybrid with B. crispipila, B. × kapangan nothosp. nov., the first report of natural hybridization in Begonia sect. Petermannia

description: Begonia balangcodiae sp. nov. from northern Luzon, the Philippines and its natural hybrid with B. crispipila, B. × kapangan nothosp. nov., the first report of natural hybridization in Begonia sect. Petermannia
DOI: 10.6084/m9.figshare.5877916.v4
title: Begonia balangcodiae sp. nov. from northern Luzon, the Philippines and its natural hybrid with B. crispipila, B. × kapangan nothosp. nov., the first report of natural hybridization in sect. Petermannia

description: Begonia balangcodiae sp. nov. from northern Luzon, the Philippines and its natural hybrid with B. crispipila, B. × kapangan nothosp. nov., the first report of natural hybridization in Begonia sect. Petermannia
DOI: 10.6084/m9.figshare.5877916.v3
title: Begonia balangcodiae sp. nov. from northern Luzon, the Philippines and its natural hybrid with B. crispipila, B. × kapangan nothosp. nov., the first report of natural hybridization in Begonia sect. Petermannia

description: Begonia balangcodiae sp. nov. from northern Luzon, the Philippines and its natural hybrid with B. crispipila, B. × kapangan nothosp. nov., the first report of natural hybridization in Begonia sect. Petermannia