cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26008/1912/bco-dmo.869011.1
title: Data resulting from testing dilution experiments conducted in the development of four assays to quantify copeod naupliar biomass in Kaneohe Bay, Hawaii

description: Quantitative PCR data from developing four assays to quantify copepod naupliar biomass in Kaneohe Bay, Hawaii. This dataset is from testing dilutions of focal species’ DNA into non-focal species’ DNA.
DOI: 10.26008/1912/bco-dmo.869085.1
title: Measurements of individual body size and qPCR estimates of DNA copy number per individual from the development of four assays to quantify copeod naupliar biomass in Kaneohe Bay, Hawaii

description: Quantitative PCR data from developing four assays to quantify copepod naupliar biomass in Kaneohe Bay, Hawaii. These data are from measurements of individual body size and qPCR estimates of DNA copy number per individual.
DOI: 10.26008/1912/bco-dmo.869225.1
title: Measurements of mixed field samples used for qPCR estimates and estimating biomass of DNA copy number in bulk samples

description: Quantitative PCR data from developing four assays to quantify copepod naupliar biomass in Kaneohe Bay, Hawaii. These data are from measurements of mixed field samples that were used for qPCR estimates and estimating biomass of DNA copy number in bulk samples.
DOI: 10.26008/1912/bco-dmo.867007.1
title: Porewater geochemistry of sediments collected Fall 2019 in the Santa Barbara Basin using ROV Jason during R/V Atlantis cruise AT42-19

description: Sediments were collected in Fall 2019 across three transects in the Santa Barbara Basin using the ROV Jason during R/V Atlantis cruise AT42-19. Porewater was separated from the sediments and geochemical properties measured.
DOI: 10.26008/1912/bco-dmo.867221.1
title: Microbial activity from sediments collected Fall 2019 in the Santa Barbara Basin using ROV Jason during R/V Atlantis cruise AT42-19

description: Sediments were collected in Fall 2019 across three transects in the Santa Barbara Basin using the ROV Jason during R/V Atlantis cruise AT42-19. Microbial activity in the sediments was determined by measuring sulfate reduction rates.
DOI: 10.26008/1912/bco-dmo.763725.1
title: CTD profiles from six cruises to the Eastern Mediterranean from 2014-2016

description: CTD profiles from six cruises to the Eastern Mediterranean from 2014-2016
DOI: 10.26008/1912/bco-dmo.867113.1
title: Porosity and density of sediments collected Fall 2019 in the Santa Barbara Basin using ROV Jason during R/V Atlantis cruise AT42-19

description: Sediments were collected in Fall 2019 across three transects in the Santa Barbara Basin using the ROV Jason during R/V Atlantis cruise AT42-19.  This dataset consists of the sediment parameters porosity and density.
DOI: 10.26008/1912/bco-dmo.806874.1
title: Results of computer simulations of inter-microbial metabolic exchange.

description: Results of computer simulations of inter-microbial metabolic exchange. The Zipped directory contains scripts and computationally generated predictions of growth phenotypes of pairs of bacteria under different growth conditions.
DOI: 10.26008/1912/bco-dmo.851047.1
title: Seagrass responses to Labyrinthula zosterae inoculation base on a subpopulation from mesocosm experiments conducted in Nahant, Massachusetts

description: This dataset includes seagrass responses to Labyrinthula zosterae inoculation base on a subpopulation from mesocsm experiments conducted in a greenhouse at Northeastern University Marine Science Center in Nahant, Massachusetts from May to August 2016.
DOI: 10.26008/1912/bco-dmo.851059.1
title: Seawater temperature and salinity of mesocosms and a field location collected while conducting experiments on seagrass in Nahant, Massachusetts

description: This dataset includes seawater temperature and salinity measurements from mesocosms and from a field location at Curlew Beach. Data were collected as part of a study examining seagrass responses to Labyrinthula zosterae conducted in a greenhouse at Northeastern University Marine Science Center in Nahant, Massachusetts from May to August 2016.
DOI: 10.26008/1912/bco-dmo.836954.2
title: Carbonate chemistry and CTD data collected along a North Pacific transect between Hawaii and Alaska on R/V Kilo Moana cruise KM1712 in August 2017

description: This dataset includes carbonate chemistry and general measurements from CTD casts at 6 stations between Hawaii and Alaska. Data were collected in August 2017 onboard R/V Kilo Moana.
DOI: 10.26008/1912/bco-dmo.851122.1
title: Wasting disease prevalence and severity and seagrass length and density based on subpopulations of Zostera marina on the North Shore of Massachusetts surveyed in July and September 2016

description: This dataset includes wasting disease infection prevalence and severity in four Zostera marina subpopulations located along a 30 kilometer stretch of coastline on the North shore of Massachusetts. Surveys of subpopulations were conducted  in July and September 2016.
DOI: 10.26008/1912/bco-dmo.868908.1
title: POM concentrations for carbon, nitrogen, and phosphorus from GO-SHIP Line C13.5/A13.5 in 2020

description: This dataset includes particulate organic matter (POM) concentrations for carbon, nitrogen, and phosphorus. Data are from samples collected from NOAA Ship R/V Ronald H. Brown (cruise EXPOCODE: 33RO20200321), acting under the auspices of the Global Ocean Ship-based Hydrographic Investigations Program (GO-SHIP), A13.5 GO-SHIP/CO2 Repeat Hydrography Cruise in 2020.
DOI: 10.26008/1912/bco-dmo.833517.1
title: Hydrographic, nutrient, and carbonate system data from R/V Janan cruises in the Arabian Gulf in December 2018 and May 2019

description: The data show that the average value of pCO2 in surface seawater in the Exclusive Economic Zone of Qatar is supersaturated with respect to the atmosphere. The excess pCO2 reflects a balance between a source due to the impact of increasing T and S on the carbonate system equilibrium constants and a sink due to CO2 loss due to gas exchange from surface seawater after it enters the Gulf through the Strait of Hormuz. Nevertheless, CaCO3 formation was still more important, relative to net biological production, than in the open ocean. The tracer Alk* has values determined by CaCO3 formation and had values suggesting substantial CaCO3 formation.
DOI: 10.26008/1912/bco-dmo.859867.1
title: Maximum depths of the visual luminoxyscape for four species of marine invertebrate larvae from CalCOFI stations between La Jolla, California to Point Conception between 1984-2019

description: In this dataset, the maximum depths of the visual luminoxyscape for four species of marine invertebrate larvae were recorded. Data in this study are from CalCOFI stations restricted to an area from La Jolla, California to Point Conception and 215 kilometers maximum offshore (Station 60). We analyzed daytime casts (09:00-16:00) of both discrete bottle data and continuous CTD casts to represent the date range of 1984-2019 and used the oxygen and irradiance measurements to determine the visual luminoxyscape for each of the larval species. This range was bounded by the oxygen (partial pressure) where the pO2 would permit 50% minimum retinal function (V50; 13, 7.2, 10.2, and 6.8 kPa for larvae of 'Doryteuthis opalescens', 'Octopus bimaculatus', 'Metacarcinus gracilis', and 'Pleuroncodes planipes', respectively), and where there is sufficient irradiance for a visual response (0.0311 µmol photons m-2 s-1) for each species. Additionally, oxygen limits for metabolism were used to determine the depth of occurrence of the Pcrit (the oxygen below which the animal cannot maintain a constant metabolic rate). The depths of occurrence for metabolic limits were determined for larvae of 'D. opalescens' and 'O. bimaculatus'.
DOI: 10.26008/1912/bco-dmo.868193.1
title: Size fractionated zooplankton d13C and d15N of individual amino acids from EXPORTS cruise RR1813 in August 2018

description: This dataset reports the size fractionated zooplankton d13C and d15N of individual amino acids from samples collected on the EXPORTS cruise (RR1813) in August 2018.
DOI: 10.26008/1912/bco-dmo.743867.2
title: A compilation of dissolved noble gas and N2/Ar ratio measurements collected from 1999-2016 in locations spanning the globe

description: Inert gases dissolved in the ocean are powerful tracers of the impact of physical processes on gases, particularly air-sea gas exchange (by both diffusive and bubble-meditated processes), temperature change, atmospheric pressure variation, mixing between different water masses, and ice processes. We have compiled a global ocean database of dissolved neon, argon, and krypton measurements, supplemented by helium, xenon, and nitrogen/argon (N2/Ar) ratios in some locations. Samples were collected on board multiple research cruises spanning the period 1999 through 2016 and analyzed by mass spectrometry at four different shore-based laboratories (University of Victoria, Woods Hole Oceanographic Institution, University of Washington, and Scripps Institution of Oceanography).

Version 2.0 corrects an incorrect sign in the longitude for cruise 33KI20040814:HOT162 in version 1.0. The error in the database does not affect any figures in the publication (doi: 10.1146/annurev-marine-121916-063604).
DOI: 10.26008/1912/bco-dmo.860397.1
title: Organized and quality-controlled CalCOFI data for CTD casts and bottle measurements from CalCOFI stations between La Jolla, California to Point Conception between 1984-2019

description: In this dataset, we analyzed daytime casts (09:00-16:00) of both discrete bottle data and continuous CTD casts from CalCOFI stations restricted to an area from La Jolla, California to Point Conception and 215 km maximum offshore. This dataset has combined bottle and CTD casts to represent the date range 1984-2019. We used the oxygen and irradiance measurements to determine the visual luminoxyscape for each of the larval species. This range was bounded by the oxygen (partial pressure) where the pO2 would permit 50% minimum retinal function (V50; 13, 7.2, 10.2, and 6.8 kPa for larvae of 'Doryteuthis opalescens', 'Octopus bimaculatus', 'Metacarcinus gracilis', and 'Pleuroncodes planipes', respectively), and where there is sufficient irradiance for a visual response (0.0311 µmol photons m-2 s-1) for each species. Additionally, oxygen limits for metabolism were used to determine the depth of occurrence of the Pcrit (the oxygen below which the animal cannot maintain a constant metabolic rate). The depths of occurrence for metabolic limits were determined for larvae of 'D. opalescens' and 'O. bimaculatus'.
DOI: 10.26008/1912/bco-dmo.868030.1
title: Relative protein abundance from scaled and corrected exclusive peptide spectral counts from the ProteOMZ R/V Falkor expedition cruise FK160115 in the Pelagic central Pacific Ocean in 2016

description: Relative protein abundance from scaled and corrected exclusive peptide spectral counts from 20-1250 m in the water column (0.2-3 µm filter size fraction) from the ProteOMZ R/V Falkor expedition. There are a total of 107,579 unique peptide sequences from 56,543 protein groups (88,251 proteins). Exclusive spectral counts are provided per sample as are the full dataset scaled and normalized spectral counts. The protein distributions in this dataset highlight the microbial dynamics across biomes in the central Pacific Ocean.  These data were submitted in Saunders et al. (2022).
DOI: 10.26008/1912/bco-dmo.853101.1
title: Concentrations and radiocarbon signatures of SPE-DOC extracted from seawater samples on GO-SHIP cruises P16N, P18, and IO7N in the North Pacific, Eastern Pacific, and Western Indian Oceans

description: This dataset includes concentrations and radiocarbon signatures of solid-phase extracted dissolved organic carbon (SPE-DOC) from seawater samples. Water samples were collected on GO-SHIP cruises P16N, P18, and IO7N in the North Pacific, Eastern Pacific, and Western Indian Oceans from 2015 to 2018.
DOI: 10.26008/1912/bco-dmo.865685.1
title: Simulation of the volume-dependent changes in ẟ15N and ẟ18O for IAEA-NO3 and USGS-34 reference materials (Biological Nitrogen Isotope Fractionation project)

description: Simulation of the volume-dependent changes in ẟ15N and ẟ18O for IAEA-NO3 and USGS-34 reference materials.
DOI: 10.26008/1912/bco-dmo.865089.1
title: Volume effects on blanks originating from the bacterial concentrates, equilibration with atmospheric N2O, and NO3- contamination of the water into which the standards were diluted from 2017-2020 (Biological Nitrogen Isotope Fractionation project)

description: Volume-dependent N2O blanks originating from the bacterial concentrates, equilibration with atmospheric N2O, and NO3- contamination of the water into which the standards were diluted.
DOI: 10.26008/1912/bco-dmo.865666.1
title: O exchange with water during denitrification with the denitrifier method (Biological Nitrogen Isotope Fractionation project)

description: Effects of sample volume and salinity on O atom exchange with water during denitrification with the denitrifier method. The percentages of O atom exchange were derived from the regression slopes of ẟ18ON2O vs. ẟ18OH2O.
DOI: 10.26008/1912/bco-dmo.865676.1
title: Simulation of δ15N and δ18O scale contraction, given the observation of the fraction of O atom exchange with water and blanks (Biological Nitrogen Isotope Fractionation project)

description: Simulation of δ15N and δ18O scale contraction, given the observation of the fraction of O atom exchange with water and blanks.
DOI: 10.26008/1912/bco-dmo.865053.1
title: Effects of sample volume on N2O recovery and isotopic analysis (Biological Nitrogen Isotope Fractionation project)

description: Incomplete N2O analyte recovery during sparging of high-volume samples and associated N and O isotopic ratio offsets.
DOI: 10.26008/1912/bco-dmo.865519.1
title: Analyses of nitrate reference solutions in 18O-labeled water with the denitrifier method (Biological Nitrogen Isotope Fractionation project)

description: IAEA-NO3 and USGS-34 reference solutions were supplemented with 18O-labeled water and analyzed for N and O isotope ratios.
DOI: 10.26008/1912/bco-dmo.868047.1
title: Proximate biochemistry of sponge species collected in 2017 and 2018 across the Caribbean Basin in Curacao, Belize, Grand Cayman, St. Croix

description: Proximate biochemistry of sponge species collected in 2017 and 2018 across the Caribbean Basin in Curacao, Belize, Grand Cayman, St. Croix.  These data were published in Clayshulte Abraham et al. (2021).
DOI: 10.26008/1912/bco-dmo.865031.1
title: Volume-dependent offsets in NO3- N and O isotope ratios of reference materials (Biological Nitrogen Isotope Fractionation project)

description: NO3- reference materials (IAEA-NO3 and USGS-34) in seawater and freshwater were used to demonstrate volume-dependent offsets of NO3- N and O isotope ratio analyses with the denitrifier method.
DOI: 10.26008/1912/bco-dmo.865043.1
title: ẟ15N (ẟ18O) scale contraction was calculated as the percent deviation of the difference between measured ẟ15N (ẟ18O) values of IAEA-NO3 and USGS-34 from the true difference (Biological Nitrogen Isotope Fractionation project)

description: ẟ15N (ẟ18O) scale contraction was calculated as the percent deviation of the difference between measured ẟ15N (ẟ18O) values of IAEA-NO3 and USGS-34 from the true difference.
DOI: 10.26008/1912/bco-dmo.867931.1
title: Data on hatching frequency and success from an experiment on CO2 sensitivity of Northern sand lance (Ammodytes dubius) embryos conducted in 2020

description: Source data of two years of experimentation on Northern sand lance (Ammodytes dubius) embryos at different temperature and pCO2 conditions. Founder adults were sampled at Stellwagen Bank National Marine Sanctuary (SBNMS) (42° 9' 58.26&quot; N, 70° 18' 44.1&quot; W). Two complementary experiments were conducted in late 2018 (E1) and 2020 (E2), each rearing newly fertilized sand lance embryos to hatch over the course of 32-65 days. This dataset includes information from the switch experiment (E2) in 2020.
DOI: 10.26008/1912/bco-dmo.867401.1
title: Hatch data from experiments on CO2 sensitivity of Northern sand lance (Ammodytes dubius) embryos conducted in 2018 and 2020

description: Source data of two years of experimentation on Northern sand lance (Ammodytes dubius) embryos at different temperature and pCO2 conditions. Founder adults were sampled at Stellwagen Bank National Marine Sanctuary (SBNMS) (42° 9' 58.26&quot; N, 70° 18' 44.1&quot; W). Two complementary experiments were conducted in late 2018 (E1) and 2020 (E2), each rearing newly fertilized sand lance embryos to hatch over the course of 32-65 days. This dataset includes information on rearing conditions, hatch frequency, and hatch success.
DOI: 10.26008/1912/bco-dmo.867707.1
title: Data on unhatched embryos from an experiment on CO2 sensitivity of Northern sand lance (Ammodytes dubius) embryos conducted in 2018

description: Source data of two years of experimentation on Northern sand lance (Ammodytes dubius) embryos at different temperature and pCO2 conditions. Founder adults were sampled at Stellwagen Bank National Marine Sanctuary (SBNMS) (42° 9' 58.26&quot; N, 70° 18' 44.1&quot; W). Two complementary experiments were conducted in late 2018 (E1) and 2020 (E2), each rearing newly fertilized sand lance embryos to hatch over the course of 32-65 days. This dataset includes information on unhatched embryos from the first experiment.
DOI: 10.26008/1912/bco-dmo.867837.1
title: Data on chorion thickness from embryos studied in an experiment on CO2 sensitivity of Northern sand lance (Ammodytes dubius) embryos conducted in 2018

description: Source data of two years of experimentation on Northern sand lance (Ammodytes dubius) embryos at different temperature and pCO2 conditions. Founder adults were sampled at Stellwagen Bank National Marine Sanctuary (SBNMS) (42° 9' 58.26&quot; N, 70° 18' 44.1&quot; W). Two complementary experiments were conducted in late 2018 (E1) and 2020 (E2), each rearing newly fertilized sand lance embryos to hatch over the course of 32-65 days. This dataset includes information on chorion thickness from the first experiment.
DOI: 10.26008/1912/bco-dmo.854106.1
title: CTD casts collected at station Kahe and ALOHA between June 15 and June 24, 2019 onboard R/V Kilo Moana cruise KM1910.

description: CTD hydrocast data from KM1910. Dataset includes up- and down-cast vertical profiles of pressure, temperature, salinity, dissolved oxygen, chloropigment fluorescence, beam transmissometry, and photosynthetically active radiation from all CTD rosette casts conducted during the cruise (22 discrete casts).
DOI: 10.26008/1912/bco-dmo.867447.1
title: Morphometric data from experiments on CO2 sensitivity of Northern sand lance (Ammodytes dubius) embryos conducted in 2018 and 2020

description: Source data of two years of experimentation on Northern sand lance (Ammodytes dubius) embryos at different temperature and pCO2 conditions. Founder adults were sampled at Stellwagen Bank National Marine Sanctuary (SBNMS) (42° 9' 58.26&quot; N, 70° 18' 44.1&quot; W). Two complementary experiments were conducted in late 2018 (E1) and 2020 (E2), each rearing newly fertilized sand lance embryos to hatch over the course of 32-65 days. This dataset includes information on morphometrics of eggs and hatchlings.
DOI: 10.26008/1912/bco-dmo.864434.1
title: Radiochemistry data for fluids sampled from the Lost City Hydrothermal Field at the Atlantis Massif in 2018

description: This dataset includes radiochemistry data for fluids from 7 vent sites (Marker 2, Beehive, Marker 8, Marker 3, Calypso, Marker C. and Sombrero) at the Lost City Hydrothermal Field at the Atlantis Massif (30N, Mid-Atlantic Ridge). Fluid samples were collected in September 2018 during the AT42-01 expedition of the R/V Atlantis with the remotely operated vehicle (ROV) Jason II.
DOI: 10.26008/1912/bco-dmo.866774.1
title: Bulk isotopic composition (d15N and d13C) of abyssal megafauna and macrofauna from Stations M and Aloha

description: This dataset includes bulk isotopic composition (d15N and d13C) of abyssal megafauna and macrofauna from Station M and Station Aloha. Macrofauna and megafauna were collected in May and October 2019 using the HOV Alvin and the ROV Doc Ricketts, respectively, at Station M and in July 2019, January 2020, and July 2020 using ROV Lu'ukai at Station Aloha. Macrofauna at Station M were collected using HOV-operated Ekman cores (20x20 cm).
DOI: 10.26008/1912/bco-dmo.864460.1
title: Radiochemistry data for rocks and deposits from the Lost City Hydrothermal Field at the Atlantis Massif from 2018-2020

description: Radiochemistry of serpentinite, carbonate-brucite chimney, and other solid samples from the Lost City Hydrothermal Field at the Atlantis Massif from 2018 and four previous expeditions in 2015, 2005, 2003, and 2000 (Kelley et al., 2001; Kelley et al., 2005; Früh-Green et al.,2018).
DOI: 10.26008/1912/bco-dmo.865249.1
title: Iodine speciation and isotope data from iodine tracer experiments at the WHOI Environmental Systems Laboratory on Martha’s Vineyard Sound

description: This dataset includes iodine speciation and isotope measurements from iodine tracer experiments. Water samples were collected from a depth of 5 meters at the Woods Hole Oceanographic Institution's Environmental Systems Laboratory on Martha's Vineyard Sound, Massachusetts, USA.
DOI: 10.26008/1912/bco-dmo.865703.1
title: Iodine speciation and isotope data from iodine tracer experiments on the R/V Falkor in June 2018

description: This dataset includes results from iodine tracer experiments conducted on the R/V Falkor (cruise number FK180624) in June and July 2018. Samples were collected at the Eastern Tropical North Pacific oxygen deficient zone (ETNP ODZ) from five targeted depths (95, 105, 145, 168, and 475 meters) at 14N, 110W and one depth (151 meters) at 14N, 115W.
DOI: 10.26008/1912/bco-dmo.866456.1
title: Cell counts from an experiment examining the effect of Sr on the coccolithophore Scyphosphaera apsteinii calcification

description: The effect of Sr on the coccolithophore Scyphosphaera apsteinii calcification was assessed over a 10 day period. Cells were counted on each collection day using a hemocytometer or Sedgwick-Rafter chamber.
DOI: 10.26008/1912/bco-dmo.866648.1
title: Quantum yield of photosystem II (Fv/Fm) from an experiment examining the effect of Sr on the coccolithophore Scyphosphaera apsteinii calcification

description: The effect of Sr on the coccolithophore Scyphosphaera apsteinii calcification was assessed over a 10 day period. The quantum yield of photosystem II (Fv/Fm) was determined using a fluorometer by pipetting approximately 1.5 mL of sample from each flask into a cuvette.
DOI: 10.26008/1912/bco-dmo.866679.1
title: Energy-dispersive X-ray spectroscopy (EDS) from an experiment examining the effect of Sr on the coccolithophore Scyphosphaera apsteinii calcification

description: The effect of Sr on the coccolithophore Scyphosphaera apsteinii calcification was assessed over a 10 day period. These data resulted from the energy-dispersive X-ray spectroscopy conducted as part of this experiment. The spectra files are also provided in a .zip.
DOI: 10.26008/1912/bco-dmo.768138.2
title: Specimen log with OTU identifiers collected from Palau marine lakes

description: List of all barcoded specimens of collected invertebrates with OTU identifiers collected from Palau marine lakes. FASTA files for major invertebrate groups are included in supplemental files.
DOI: 10.26008/1912/bco-dmo.866738.1
title: Coccolith morphology data from an experiment examining the effect of Sr on the coccolithophore Scyphosphaera apsteinii calcification

description: The effect of Sr on the coccolithophore Scyphosphaera apsteinii calcification was assessed over a 10 day period. This dataset includes scores for each morphometric category assigned from SEM image analysis.