cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.7q704rn/1
title: data

description: 1H NMR test was carried out on a Bruker Avance 400 spectrometer at resonant frequencies of 400 or 600 MHz, using DMSO-d6 and CDCl3 as solvent. Fourier-transform infrared spectra (FT-IR) and attenuated total reflection Fourier-transform infrared spectra (ATR FT-IR) were recorded with a Bruker Vector 22 spectrometer between 400 and 4000 cm−1. High resolution liquid chromatography-mass spectrometry (HRLC-MS) data were recorded on an Agilent 1290-micrOTOF-QII instrument. Thermal stability was assessed using thermogravimetric analyzer (TGA) operated at a 20 °C min−1 from 30 to 800 °C under N2 gas flow. Differential scanning calorimetry (DSC) analysis was conducted on a Netzsch DSC 200F3 at a heating rate of 5 °C min−1 under nitrogen atmosphere from 30 to 400 °C. Dynamic mechanical thermal analysis (DMA) was conducted on a TA Instruments DMA Q800 at a heating rate of 5 °C min−1 from 30 to 500 °C and a load frequency of 1 Hz under nitrogen, and the specimen was made with 6 mm width, 25 mm length, 50 μm thickness. Ultraviolet–visible (UV-Vis) spectra were recorded on a 3600 UV-Vis spectrophotometer at room temperature. Dielectric constants were investigated by a Hewlett-Packard 4284A dielectric spectrometer in the frequency range of 40 Hz to 1 MHz at room temperature. Wide-angle X-ray diffraction (WXRD) patterns was taken from 10° to 40° (2θ values) with Cu Kα radiation.
DOI: 10.5061/dryad.9cr73f9/1
title: Mouton_&_Martin_Func_Ecol_Comparative_Data
DOI: 10.5061/dryad.9cr73f9/2
title: Mouton_&_Martin_Func_Ecol_Exp_Data
DOI: 10.5061/dryad.9cr73f9/3
title: Mouton_&_Martin_Func_Ecol_Sound_Data
DOI: 10.5061/dryad.9pt97sj/1
title: Presence-absence table

description: Presence-absence of 350 diadromous fish species (columns) in 994 river basins (rows). See also the method section in the accompanying paper.
DOI: 10.5061/dryad.9pt97sj/2
title: Biotic and abiotic features of river basins

description: Biotic and abiotic features of 994 river basins. SR stands for Species richness, T° for temperature (°C), SST for sea surface temperature (°C), NPP for net primary productivity (mgC/m²/day). Land surface area is in arbitrary units. %Ice is the percentage of the river basin under ice at the last glacial maximum. See also the method section in the accompanying paper for further information about the variables.
DOI: 10.5061/dryad.9pt97sj/3
title: Species status

description: Taxonomic status and diadromy type for 350 diadromous species. See also the method section in the accompanying paper.
DOI: 10.5061/dryad.9pt97sj/4
title: Species occurrences

description: Data for 161 diadromous species with more than 4 occurrences per biome (terrestrial, marine) in the GBIF database. NPP stands for net primary productivity (mgC/m²/day). The column “phylogeny” indicates whether (Y) or not (N) the species belongs to the phylogeny provided by Rabosky et al. (2013). Citations are available in the associated file 'SpeciesGBIF_README.txt'. See also the method section in the accompanying paper for further information about the variables.
DOI: 10.5061/dryad.9s2p177/1
title: data Functional Ecology

description: All raw data (and more) in EXCEL format
DOI: 10.5061/dryad.d502rb4/1
title: Water quality data
DOI: 10.5061/dryad.j656q74/1
title: tropane alkaloid concentration of native and non-native populations of Datura stramonium

description: Data include leaf concentration of Atropine and Scopolamine in plants of Datura stramonium. Eight and fourteen populations from Mexico and Spain, respectively, are included. Also, seed production per plant is provided.
DOI: 10.5061/dryad.m54ff05/1
title: Niitepõld 2019 Oecologia data

description: Data are from female Glanville fritillary butterflies reared at Lammi Biological Station, Finland. Each female has multiple rows in the dataset; one row per day. Females were fed twice daily with honey-water. Additional information is provided in the comments in the data headers. Measured traits include: body mass, food intake, number of eggs laid, egg wet mass, egg dry mass, water percentage, resting metabolic rate, peak flight metabolic rate, total volume of CO2 emitted during flight measurement, lifespan, age at the onset of reproduction, number of clutches.
DOI: 10.5061/dryad.mm324rv/1
title: Data for the relation between activity and accelerometry

description: This file contains daily VeDBAactivity data and daily VeDBAaccelerometry data, collected in the field for the first analysis “VeDBAactivity as an index of energy expenditure”. Columns: 1: individual identity/ 2: daily VeDBA activity values/ 3: daily VeDBA accelerometry values.
DOI: 10.5061/dryad.mm324rv/2
title: Data for the variation of daily activity during dispersal phases

description: This file contains daily VeDBA activity data, collected in the field for the second analysis “Daily energy expenditure of dispersing vs. philopatric individuals”. Columns: 1: individual identity/ 2: daily VeDBA activity values/ 3: sex of individuals (M for male and F for female)/ 4: dispersal status of individuals (D for dispersers and P for philopatric individuals)/ 5: dispersal phase (pre_disp for Pre-dispersal, disp for Transience and post_disp for Post-dispersal)/ 6: year.
DOI: 10.5061/dryad.mm324rv/3
title: Data for the variation of daily mobility during dispersal phases

description: This file contains daily mobility data, collected in the field for the third analysis “Daily mobility of dispersing vs. philopatric individuals”. Columns: 1: individual identity/ 2: daily mobility values/ 3: sex of individuals (M for male and F for female)/ 4: dispersal status of individuals (D for dispersers and P for philopatric individuals)/ 5: days around the median date of transience/ 6: year.
DOI: 10.5061/dryad.mm324rv/4
title: Data for the variation of the circadian rhythm of activity during dispersal phases

description: The circadian rhythm of dispersal and of its energetic costs”. Columns: 1: individual identity/ 2: hourly activity values/ 3: sex of individuals (M for male and F for female)/ 4: dispersal status of individuals (D for dispersers and P for philopatric individuals)/ 5: dispersal phase (pre_disp for Pre-dispersal, disp for Transience and post_disp for Post-dispersal)/ 6: hour of the day/ 7: year
DOI: 10.5061/dryad.mm324rv/5
title: Data for the variation of the circadian rhythm of mobility during dispersal phases

description: This file contains hourly mobility data, collected in the field for the fourth analysis “The circadian rhythm of dispersal and of its energetic costs”. Columns: 1: individual identity/ 2: hourly mobility values/ 3: sex of individuals (M for male and F for female)/ 4: dispersal status of individuals (D for dispersers and P for philopatric individuals)/ 5: dispersal phase (pre_disp for Pre-dispersal, disp for Transience and post_disp for Post-dispersal)/ 6: hour of the day/ 7: year.
DOI: 10.5061/dryad.mt97dv8/1
title: Robertson_2019_Development of endothermy_Data
DOI: 10.5061/dryad.pp77bs0/1
title: Visser et al. 2019 Data

description: Results of the field experiment including measurements of the adult birds and chicks in relation to the treatments.
DOI: 10.5061/dryad.pt80482/1
title: Mexico Marine Research Metadata Database

description: This project compiled metadata on available datasets produced by marine research in Mexico. The data is categorized by region, theme, species (when applicable), and research fields. This dataset corresponds to the associated peer-reviewed paper, the living database can be accessed at http://infoceanos.conabio.gob.mx.
DOI: 10.5061/dryad.r9r0vj7/1
title: energy balance
DOI: 10.5061/dryad.tg557hc/1
title: TM-1 genome coding sequence
DOI: 10.5061/dryad.tg557hc/2
title: TM-1.final.gene.gff3
DOI: 10.5061/dryad.tg557hc/3
title: TM-1.final.gene.gff3.pep
DOI: 10.5061/dryad.vv36g.2/1.2
title: Erratum

description: Description of change between version 1 and version 2.
DOI: 10.5061/dryad.vv36g.2/10.2
title: Raw images - DAMO-MAIV

description: Raw images (JPEG) files from cameras at Damoy Point, George's Point, Half Moon Island, Port Lockroy and Maiviken - DAMO (1), GEOR (1), HALF (2), LOCK (1) and MAIV (4), respectively. Numbers in parentheses denote the number of separate folders associated with each camera location. Each image shows the date, time, moon phase and temperature alongside the photograph. Individual images are named in the following format: SITExYEARx_imagenumber.JPG. For more information please refer to the associated paper.
DOI: 10.5061/dryad.vv36g.2/5.2
title: Raw images - PETE.1

description: Raw images (JPEG) files for photographs captured on Petermann Island (PETE). There are 2 folders in total (images are separated by year); additional PETE images can be found in 'PETE.2'. Date, time, moon phase and temperature are shown within each image. Image names are in the following format: SITExYEARx_imagenumber.JPG. Please see the associated paper for more information.
DOI: 10.5061/dryad.vv36g.2/6.2
title: Raw images - PETE.2

description: Raw image (JPEG) files for photographs captured on Petermann Island (PETE). There are 2 folders in total (images are separated by camera and year); additional PETE images can be found in 'PETE.1'. Date, time, moon phase and temperature are shown within each image. Image names are in the following format: SITExYEARx_imagenumber.JPG. Please see the associated paper for more information.
DOI: 10.5061/dryad.vv36g.2/7.2
title: Raw images - SPIG

description: Raw image (JPEG) files for photographs captured on Spigot Peak (SPIG). There are 3 folders in total (images are separated by year). Date, time, moon phase and temperature are shown within each image. Image names are in the following format: SITExYEARx_imagenumber.JPG. Please see the associated paper for more information.
DOI: 10.5061/dryad.vv36g.2/8.2
title: PW Anonymised Raw Classifications and Metadata

description: This folder contains 32 csv files, each providing the metadata (including - but not limited to - 'user_name' (anonymised), 'subject_zooniverse_id', 'temperature_f', 'timestamp', and raw 'x' and 'y' coordinates for volunteer clicks) associated with each of the 63,070 Penguin Watch subjects (photographs) provided in this repository. Please see the associated paper for further information and an explanation of terms. The metadata are divided by camera/year, although some are subdivided for clarity and consistency with the 'PW Consensus Click Data' files. For information on how to filter the raw coordinates prior to performing a cluster analysis, please see the 'Clustering Algorithm' section of the accompanying 'Data Descriptor'. Please note that any missing information is absent because it could not be obtained from the cameras, or was missing from the Penguin Watch database - all available metadata have been uploaded to the repository.
DOI: 10.5061/dryad.vv36g.2/9.2
title: PW Consensus Click Data

description: This folder comprises 32 csv files, each containing 'consensus click' data relating to the 63,070 Penguin Watch subjects (photographs) also published in this repository. These data are produced via a clustering algorithm (see the 'Methods' section of the associated paper for more information), the code for which can be found on GitHub at the following address: https://github.com/zooniverse/aggregation/blob/master/penguins/aggregate.py (a static version is also archived on Figshare at: https://doi.org/10.6084/m9.figshare.5472544.v1). Please also see the associated paper for an explanation of terms. Please note that the data for some cameras have been subdivided into multiple files - this is to increase clarity, and for consistency with respect to the 'Anonymised Raw Classifications and Metadata' files.
DOI: 10.17632/jbnxczdvfb.1
title: Data for: Contribution of Generator-Load Pairs in Distribution Networks Power Losses

description: Distribution of Network Losses Between Generator-Load Pairs in Distribution Networks With Distributed Generators.
DOI: 10.17632/ss8cdvr74v.1
title: Data for: Litter of the invasive Rhododendron ponticum modifies the decomposition rate of native UK woodland litter

description: Data from bioassays and chemical analyses
DOI: 10.5061/dryad.1498h4m/2
title: Phenology data in middle and eastern Eurasia from 1982 to 2015

description: The folder named SOS stores the SOS data. The folder named EOS stores the EOS data. The "xlsx" files store the data corresponding to the figure in the article.
DOI: 10.5061/dryad.174v48d/1
title: Bioassay data

description: Plant trait (biomass and volatile data), and entomopathogenic nematode choice data
DOI: 10.5061/dryad.382ps00/1
title: Cram et al Data for Analysis 01

description: This file contains the data required to run the first empirical analysis in Cram et al 2019 Behavioral Ecology: How does parturition timing, relative to other female group-mates, affect subordinate litter survival?
DOI: 10.5061/dryad.382ps00/2
title: Cram et al Data for Analysis 02

description: This file contains the data required to run the second set of empirical analyses in Cram et al (2019) Behavioral Ecology: Do subordinate females synchronize parturition with the dominant female? Please note that negative values for the "days_since_dominant_parturition" field indicate that the subordinate gave birth before the dominant.
DOI: 10.5061/dryad.4433sp2/1
title: Flight altitudes by quantile

description: CSV file contains data used for modeling flight altitudes of nocturnal bird migration in relation to urban areas and weather variables.
DOI: 10.5061/dryad.4433sp2/2
title: Differences between flight altitudes, by quantile

description: CSV file contains data used for modeling the difference in flight altitudes of nocturnal bird migration over urban bright and non-urban dark areas in relation to weather variables.
DOI: 10.5061/dryad.4n7n883/1
title: Nilgiri_germination_data

description: Data on native and invasive tree species germination across the habitats and soils recorded from the replicated in-situ experiment in the Nilgiri Hills of the Western Ghats
DOI: 10.5061/dryad.6b2c0n3/1
title: RawData_Models
DOI: 10.5061/dryad.6vp6pv8/1
title: Samples and metadata
DOI: 10.5061/dryad.b68b048/1
title: Turtle_coloration_datafiles

description: The archive contain all datafiles used in analyses in the manuscript: Body coloration and mechanisms of colour production in Archelosauria: The case of deirocheline turtles. Specificaly there are: reflectance spectra of all individual turtles, summary variables derived from reflectance spectra of all individuals, R script of multivariate analyses of summary variables, electromicrographs of reflecting platelets of turtles' iridophores, measurements of reflecting platelets of iridophores, electromicrographs of collagen fibres used in Fourier analyses, output files resulting from Fourier analyses of collagen fibres, and description of changes in Fourier tool script provided by Dr. Prum (https://prumlab.yale.edu/research/fourier-tool-analysis-coherent-scattering-biological-nanostructures) that were necessary to secure compatibility of current versions of MATLAB.
DOI: 10.5061/dryad.bd6m135/1
title: Bookham Common, England
DOI: 10.5061/dryad.bd6m135/2
title: Bialowieza forest, plot CM
DOI: 10.5061/dryad.bd6m135/3
title: Bialowieza forest, plot K
DOI: 10.5061/dryad.bd6m135/4
title: Bialowieza forest, plot L
DOI: 10.5061/dryad.d502rb4/2
title: enviromental data
DOI: 10.5061/dryad.f45gh6s/1
title: Avida configuration instructions

description: This zip file contains a MS Word document with instructions on how to configure Avida to replicate the experiments from the paper. It also contains a folder "Analyze_file_for_lineage_extraction" with a sample Avida 'analyze file' used to extract the lineage of the final predominant organism from a given population.
DOI: 10.5061/dryad.f45gh6s/2
title: Raw data from Experiment 1

description: This zip file contains the Avida raw data output for Experiment 1. The data is divided in four folders according to the experimental environment (treatment): Nutrient Cued, One Fixed Turn, Random Start, and Two Fixed Turns. Each of these folders contains a sub-folder "Experiment_configuration_files" with the files necessary to configure Avida to recreate the particular experiment. Finally, each environment folder contains another 50 sub-folders, with the data from each replicate.
DOI: 10.5061/dryad.f45gh6s/3
title: Raw data from Experiment 2 (part 1 of 4)

description: This zip file is 1 of 4 files containing the Avida raw data output for Experiment 2. The data from 225 out of 900 replicates is stored in individual folders. In addition, the zip file contains a folder "Experiment_configuration_files" with the files necessary to configure Avida to recreate this experiment.
DOI: 10.5061/dryad.f45gh6s/4
title: Raw data from Experiment 2 (part 2 of 4)

description: This zip file is 1 of 4 files containing the Avida raw data output for Experiment 2. The data from 225 out of 900 replicates is stored in individual folders.
DOI: 10.5061/dryad.f45gh6s/5
title: Raw data from Experiment 2 (part 3 of 4)

description: This zip file is 1 of 4 files containing the Avida raw data output for Experiment 2. The data from 225 out of 900 replicates is stored in individual folders.
DOI: 10.5061/dryad.f45gh6s/6
title: Raw data from Experiment 2 (part 4 of 4)

description: This zip file is 1 of 4 files containing the Avida raw data output for Experiment 2. The data from 225 out of 900 replicates is stored in individual folders. In addition, the zip file contains a folder "Test_Environments" with two additional environment configuration files used for evaluating an individual organism's performance.
DOI: 10.5061/dryad.g3r3hp7/1
title: Senescence Screen of the Kronos TILLING Population

description: Senescence screen of the Kronos TILLING population Referred to in Harrington et al. 2019 doi: 10.3389/fpls.2019.00963 The associated Excel file contains all phenotypic scores for heading, flag leaf senescence, and peduncle senescence of the Kronos TILLING population. The trial was carried out in 2015 at the John Innes Centre in Norwich, UK. Relevant information on trial design and field management practices are available in the associated paper (Harrington et al. 2019)
DOI: 10.5061/dryad.g40g7k0/1
title: amil_v102

description: The reference transcriptome used in the analysis. This was obtained from the laboratory of Misha Matz, UT Austin. This file is identical, except some fasta headers have had gene symbols updated. For the paper, isogroup numbers are the core identifier and isogroup to gene symbol mappings from the supplemental data should be used, not gene symbols from the fasta headers
DOI: 10.5061/dryad.g40g7k0/2
title: Wuitchik2019_supplementary_data_april23

description: All supplemental data including statistical analyses
DOI: 10.5061/dryad.g40g7k0/3
title: normalized_counts

description: The normalized count table for all experiments. Details on the column headers are available in a separate file, experimental design.txt
DOI: 10.5061/dryad.g40g7k0/4
title: expDesign

description: A key to column headers in the normalized count table.
DOI: 10.5061/dryad.g48v3m0/1
title: Game results used in analysis

description: Anonymised dataset containing participants in each communities.
DOI: 10.5061/dryad.jd820r4/1
title: Filtered VCF files

description: This file contains the variants that were genotyped using GATK3. A GATK hard-filter has been applied.
DOI: 10.5061/dryad.jd820r4/2
title: Putatively neutral regions

description: This zipped directory includes putatively neutral regions for the cutoff values of genetic distance to the nearest gene used in the article (0.0 cM, 0.2 cM, 0.4 cM, 0.6 cM, 0.8 cM, and 1 cM).
DOI: 10.5061/dryad.n34035p/1
title: Amphibian skin microbiome

description: The folder contains the sequencing data (raw 16S rRNA gene fastq sequences from a paired-end run on an Illumina MiSeq) used in analyses of the respective publication.
DOI: 10.5061/dryad.nt288h1/1
title: Ecosystem services provided by  bromeliads

description: A  systematic review of ecosystem services provided by bromeliad plants following the PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses). The file shows the research studies and review articles published between January 1981 and June 2017. For each paper, the title, authors, year of publication,  and ecosystem services are presented.
DOI: 10.5061/dryad.nt4994r/1
title: Data

description: Input data for modelling.
DOI: 10.5061/dryad.nt4994r/2
title: Gender metadata

description: Gender metadata for modelling
DOI: 10.5061/dryad.nt4994r/3
title: R Code

description: R code used for analyses
DOI: 10.5061/dryad.p5dq84v/1
title: Larter et al 2019 Dvdy Iochrominae development evolution DATA

description: Data and code used for publication "Developmental control of convergent floral pigmentation across evolutionary timescales, Larter, Maximilian, Dunbar-Wallis, Amy, Berardi, Andrea E., Smith, Stacey D.".
DOI: 10.5061/dryad.pf8011h/1
title: Input data for program Structure

description: Samples collected in the field. RADseq data processed as explained in the text with program AftrRAD 4.1 in order to produce this input file.
DOI: 10.5061/dryad.pf8011h/2
title: Input data for adegenet R package

description: Samples collected in the field. RADseq data processed as explained in the text with program AftrRAD 4.1 in order to produce this input file.
DOI: 10.5061/dryad.q99m547/1
title: Data Set S1_Single shift data

description: Waggle run duration for individual bees for the single shift experiment. The file contains bee id, colony, feeder distance, waggle dance no, waggle run no. and run duration.
DOI: 10.5061/dryad.q99m547/2
title: Data Set S2_Double shift data

description: Waggle run duration for individual bees for the double shift experiment. The file contains bee id, colony, feeder distance, waggle dance no, waggle run no. and run duration.
DOI: 10.5061/dryad.r9r0vj7/2
title: daily flux and meteorological data
DOI: 10.5061/dryad.r9r0vj7/3
title: monthly flux and meteorological data
DOI: 10.5061/dryad.sd7cd06/1
title: Bumble_bee_colour_mimicry_data

description: This repository contains datafiles and scripts used in “Unsupervised machine learning reveals mimicry complexes in bumble bees occur along a perceptual continuum.” Specifically, we provide scripts, species colour diagrams, and data files used to infer the extent of mimetic fidelity and the properties of mimicry transition zones in bumble bees across the contiguous United States.
DOI: 10.5061/dryad.t2t00m0/1
title: Flock Database

description: The species composition of 375 mixed-species flocks sampled in the study.
DOI: 10.5061/dryad.t2t00m0/2
title: Propensity and Encounter Rate Data

description: The flocking propensity (% of individuals in mixed-species flocks) and flock encounter rate for all the transects sampled during the study.
DOI: 10.5061/dryad.tf7s2s5/1
title: species composition, traits and factors

description: The provided data are species traits values, species composition in each experiment and factors and treatments for each pot in both experiments. Descriptions of factors levels are included as coments in the head title of the colums of the excel file. Trait values are the mean of 10 individuals/spp colected in the field. Species composition, richness and abundance values have benn collected in the pots of the experiment.
DOI: 10.5061/dryad.tg557hc/4
title: ZM24.final.gene.change.gff3
DOI: 10.5061/dryad.tg557hc/5
title: ZM24.final.gene.change.gff3.cds
DOI: 10.5061/dryad.tg557hc/6
title: ZM24.final.gene.change.gff3.pep
DOI: 10.5061/dryad.tg557hc/7
title: ZM24_CRI.fa
DOI: 10.5061/dryad.tg557hc/8
title: TM-1_CRI.fa
DOI: 10.5061/dryad.v23517k/1
title: Surveillance data by grid ID, season, and surveillance method

description: This file contains positive and negative rabies surveillance data by grid ID (site), season, year, and surveillance method. The number of raccoons that were sampled and were positive for rabies and the number of raccoons that were sampled and were found to be negative for rabies are provided.