DOI: 10.5281/zenodo.7377139
title: Genomic data and common garden experiments reveal climate-driven selection on ecophysiological traits in two Mediterranean oaks

description: This release includes the different genomic datasets used in the article entitled "<em>Genomic data and common garden experiments reveal climate-driven selection on ecophysiological traits in two Mediterranean oaks</em> " by Ramírez-Valiente et al., File description: <strong>Samples.xlsx</strong>: Description of individual and population codes used in the different analyses and genomic datasets. <strong>Quercus_faginea_p12r05m05minMAF001_all_loci.str</strong>: Input file used to perform genetic clustering analyses (STRUCTURE and DAPC) for <em>Quercus faginea</em> including all loci. <strong>Quercus_faginea_p12r05m05minMAF001_neutral_loci.str</strong>: Input file used to perform genetic clustering analyses (STRUCTURE and DAPC) for <em>Quercus faginea</em> excluding outlier loci (i.e., putatively under selection) identified by either BAYESCAN or using the FDIST method in ARLEQUIN. <strong>Quercus_lusitanica_p7r05m05minMAF001_all_loci.str</strong>: Input file used to perform genetic clustering analyses (STRUCTURE and DAPC) for <em>Quercus lusitanica </em>including all loci. <strong>Quercus_ lusitanica_p7r05m05minMAF001_neutral_loci.str</strong>: Input file used to perform genetic clustering analyses (STRUCTURE and DAPC) for <em>Quercus lusitanica </em>excluding outlier loci (i.e., putatively under selection) identified by either BAYESCAN or using the FDIST method in ARLEQUIN. <strong>Quercus_faginea_p12r05m05minMAF001_BAYESCAN.txt</strong>: Input file used to perform BAYESCAN analyses for <em>Quercus faginea</em>. <strong>Quercus_lusitanica_p7r05m05minMAF001_BAYESCAN.txt</strong>: Input file used to perform BAYESCAN analyses for <em>Quercus lusitanica</em>. <strong>Quercus_faginea_p12r05m05minMAF001_ARLEQUIN.arp</strong>: Input file used to perform ARLEQUIN analyses for <em>Quercus faginea</em>. <strong>Quercus_lusitanica_p7r05m05minMAF001_ARLEQUIN.arp</strong>: Input file used to perform ARLEQUIN analyses for <em>Quercus lusitanica</em>. <strong>Quercus_faginea_p12r05m05minMAF001_all_loci.vcf</strong>: Variant call format (VCF) file for <em>Quercus faginea</em> including all loci. <strong>Quercus_faginea_p12r05m05minMAF001_neutral_loci.vcf</strong>: Variant call format (VCF) file for <em>Quercus faginea</em> excluding outlier loci (i.e., putatively under selection) identified by either BAYESCAN or using the FDIST method in ARLEQUIN. <strong>Quercus_lusitanica_p7r05m05minMAF001_all_loci.vcf</strong>: Variant call format (VCF) file for <em>Quercus lusitanica </em>including all loci. <strong>Quercus_ lusitanica_p7r05m05minMAF001_neutral_loci.vcf</strong>: Variant call format (VCF) file for <em>Quercus lusitanica </em>excluding outlier loci (i.e., putatively under selection) identified by either BAYESCAN or using the FDIST method in ARLEQUIN. <strong>Quercus_faginea_Greenhouse_DRIFTSEL.txt</strong>: Input file used to run DRIFTSEL and evaluate selection on the different studied traits for <em>Quercus faginea </em>under common garden greenhouse experiments. <strong>Quercus_faginea_Outdoor_DRIFTSEL.txt</strong>: Input file used to run DRIFTSEL and evaluate selection on the different studied traits for <em>Quercus faginea</em> under common garden outdoor experiments. <strong>Quercus_lusitanica_Greenhouse_DRIFTSEL.txt</strong>: Input file used to run DRIFTSEL and evaluate selection on the different studied traits for <em>Quercus lusitanica </em>under common garden greenhouse experiments.