cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5522/04/14217200.v1
title: Rapid Spatial Mapping of Focused Ultrasound Fields Using a Planar Fabry–Pérot Sensor

description: The data was acquired in order to investigate the potential of a robust planar Fabry–Pérot sensor for measurement of high acoustic pressures. The sensor was formed from all hard dielectric materials, and designed to operate at 1550 nm, coupled with a C-L (1516–1610 nm) band wavelength tunable laser and rapid scanning system. A set of measurements of the field of a single element spherically focusing HIFU transducer (H101, Sonic Concepts) driven at 1.1 MHz with a 4 cycle burst, was made with the sensor at a variety of drive levels, which at the lower end was compared against hydrophone measurements (0.2 mm PVDF needle hydrophone, Precision Acoustics), and at the higher end was beyond the damage threshold of conventional commercially available PVDF hydrophones, and was compared with KZK simulations of the field. Volume scans were also performed to demonstrate the feasibility of these given the rapid scan times. The transducer was mounted pointing downwards into a small temperature controlled tank filled with degassed, deionised water, with manually adjustable xyz position. The Fabry-Perot sensor was mounted in the bottom of the tank in a fixed position, and measurements were taken over the sensor area by scanning the interrogation laser beam. The directional frequency response of the sensor is included in the frequency response field in the sensor dataset. This has size [1002, 978, 3], where [:, 1, :] contains the frequency, [1, :, :] contains the angles, [2:end, 2:end , 1] is the magnitude response, [2:end, 2:end, 2] is the phase response, and [2:end, 2:end, 3] is the smoothed/corrected magnitude correction (1/mag response) that as applied to the data. In total, this records contains 5 data files: 1. Planar field scan acquired with the Fabry Perot sensor at the focal plane at low level, for comparison with hydrophone scans (Fig4). 2. Planar scans at the focal plane at three drive levels (Fig 5). 3. Small area planar scans at the focal plane at 22 different drive levels, 6 repeats up to level 13, 3 repeats at levels 13-22: 94 datasets (Fig 6). 4. Planar scans at three different axial positions at an intermediate drive level. (Fig 7). 5. Hydrophone scans: a planar scan used to define the source boundary condition for KZK simulations performed as a comparison with scans in file 2. A lateral line scan acquired for comparison with the Fabry-Perot scan in file 1.
DOI: 10.6084/m9.figshare.13325702.v1
title: Supplementary Material for: Feasibility of Endoscopic Submucosal Dissection for Early Esophageal Squamous Cell Carcinoma with Relative Indications

description: <b><i>Backgrounds:</i></b> Endoscopic submucosal dissection (ESD) has been widely performed in the treatment of early esophageal squamous cell carcinoma (ESCC). Few studies have compared the long-term outcomes of esophageal ESD based on absolute indications and relative indications. The aim of the current study was to investigate the safety and efficacy of ESD for early ESCC with relative indications. <b><i>Methods:</i></b> 297 patients with early ESCC who underwent ESD were retrospectively analyzed. They were divided into 3 groups: group A, the absolute indications group; group B, the relative indications without additional treatment after ESD group; and group C, the relative indications with additional treatment after ESD group. The baseline characteristics, therapeutic efficacy, complications, prognosis outcomes, and follow-up data were evaluated. <b><i>Results:</i></b> During the median follow-up period of 51.0 months (range 6–101 months), the incidence of local recurrence in groups A, B, and C was 1.63% (3/184), 4.23% (3/71), and 0 (0/42), respectively (<i>p</i> = 0.253). The 5-year overall survival rates were 97.83% (95% CI: 95.69–99.95%) in group A, 95.77% (95% CI: 90.95–100.00%) in group B, and 97.62% (95% CI: 92.81–100.00%) in group C with no significant differences among these 3 groups. <b><i>Conclusions:</i></b> ESD is a feasible and effective treatment for early ESCC with relative indications. Under the premise of sufficient preoperative assessment and scheduled postoperative endoscopic surveillance, additional treatment might not be necessary for patients with relative indications after ESD procedures.
DOI: 10.6084/m9.figshare.7726163.v3
title: Dataset 1. Origin, biochemical tests, PCR results and serovar of Salmonella isolates

description: Table describes the sample origin, parish, biochemical test results, PCR results, serovar interpretation of Salmonella strains isolated from layer farms in central Ecuador, 2017.
DOI: 10.17632/vhvg2xdm98
title: ESG and Financial

description: this data consists of a comprehensive survey of 3,000 Chinese enterprises spanning 2006 to 2022 a
DOI: 10.6084/m9.figshare.14406965.v1
title: ISAE Sustainability Report

description: Since 2004, ISAE annually presents in its Sustainability Report, the information related to our educational model, considering social, environmental and governance aspects. We believe that the document is a way of delivering accountability our stakeholders, sharing good practices and disseminating the initiatives to which we are signatories.
DOI: 10.6084/m9.figshare.14458896.v3
title: JEDI Billion Molecules against Covid-19: compounds synthesized

description: On May 4th 2020 a GrandChallenge entitled "Billion molecules against Covid-19" was launched by the Joint European Disruptive Initiative (JEDI). Teams from all over the world provided lists of compounds with suspected inhibitory properties versus specific SARS-CoV-2 and human host protein targets. Here we disclose 878 compounds, which were selected by the 20 top-ranked teams ('finalists'). Some finalists teams did not have compounds produced, because they were either unstable or synthetically unfeasible. The compounds were synthesized thanks to JEDI fundraising, and are in the process of being tested in biophysical assays, cell-based assays, etc. Purity data for each compound by LC-MS (liquid chromatography mass spectrometry) is provided. The data file contains SMILES information, molecular weight, purity, and solubility information (in DMSO dimethylsulfoxide). The compounds should be active against either one of the following SARS-CoV-2 protein targets: nsp3, nsp5, nucleocapsid (N), Spike (S), or RdRp (Nsp12), or against human host target TMPRSS2. Authors are listed in random order. Some co-authors are members of the Scientific Committee or organizing team of the GrandChallenge. All work has been performed with an open science mindset, and all data will be shared in the public domain. A publication is in preparation to disclose the experimental results. In version 1 of this data set it is likely that some co-author data is missing, which will be corrected in following versions. The data has been made public by the program manager of the GrandChallenge, Prof. Thomas M. Hermans. Author contributions are also available in spreadsheet format. Please contact covid19@jedi.foundation for more information, or check https://www.jedi.foundation/<br><br><br><em><strong>About JEDI </strong>- The Joint European Disruptive Initiative (JEDI) seeks to bring Europe in a leadership position in breakthrough technologies by launching Scientific and Technology GrandChallenges to push the frontiers of innovation. </em><em>It is the European advanced research projects agency (ARPA) with a radical method based on excellence, speed, high expectations, bold risk-taking & no geographical return </em><em>to solve major societal issues in environment, healthcare, digital, education, oceans & space. Driven by humanistic values, JEDI is a not-for-profit organization financed by foundations, governments, corporates and powered by the contribution of 4.100 technology and scientific leaders from academia, corporations and deeptech startups in 29 countries in Europe.</em><em><br></em><em>update 30/06/2021 17:32 CET: 12 additional co-authors added, and updated acknowledgement spreadsheet<br></em><br>
DOI: 10.6084/m9.figshare.25836142.v2
title: A picarel (<i>Spicara </i><i>smaris</i>) breeding colony partly modelized by photogrammetry

description: 3D model of the breeding grounds of Spicara smaris (Corsica; coordinates 42°14.715 N 9°35.279 E), corresponding to the figure "A picarel (<i>Spicara </i><i>smaris</i>) breeding colony partly modelized by Photogrammetry" of the article "Huge picarel breeding colonies with male nest guarders discovered in the Mediterranean" (Deter et al., in press; Current Biology)<br>
DOI: 10.6084/m9.figshare.12998255.v1
title: file1.json

description: 1000 random number
DOI: 10.6084/m9.figshare.22193320.v1
title: Supplementary Material for: Incidence and Types of Fetal Chromosomal Abnormalities in First Trimester of Thai Pregnant Women between Miscarriages and Intrauterine Survivals

description: Abortion is a common pregnancy complication. Fetuses with several types of chromosomal abnormalities are aborted during the first trimester, while others have a better chance of surviving. This research aims to study and compare the incidence and types of fetal chromosomal abnormalities during the first trimester of Thai pregnant women between miscarriages and intrauterine survivals. Cytogenetic and BACs-on-Beads™ assays were assessed from 2010 to 2020 in Ramathibodi Hospital using first trimester samples of 265 chorionic villi as a retrospective study. Chromosomal abnormalities were observed in 135 cases (50.94%) including 38.11% miscarriages and 12.83% intrauterine survivals. In total, 75.56% single autosomal trisomies, 18.52% sex chromosome aneuploidies, 5.19% double aneuploidies, and 0.74% structural abnormalities were detected. In miscarriages, all chromosomes were involved in abnormalities except chromosomes 1, 5, 8, 9, 11, and 17, while survivals had only trisomy 13, 18, 21, and sex chromosome aneuploidy. Trisomy 16 and 18 were the most common abnormalities in miscarriages and intrauterine survivals, respectively. The highest rate of chromosomal aberrations was demonstrated in 8–9<sup>+6</sup> and 12–13<sup>+6</sup> weeks of gestation in miscarriages and intrauterine survivals, respectively. Correlation between chromosomal abnormalities and maternal age &lt;35 years and ≥35 years was significant (<i>p</i> &lt; 0.05) in intrauterine survival and first trimester groups.
DOI: 10.6084/m9.figshare.23596515.v1
title: Xiphophorus_microEvolution

description: genome annotation for <i>Xiphophorus</i> genus
DOI: 10.6084/m9.figshare.29100281.v1
title: <b>A global meta-analysis of management practices on soil available and total zinc</b>

description: <b>Aim:</b> To investigate the effects of eight fertilization strategies on soil available and total zinc content, as well as to identify their key driving factors.<b>Location:</b> Global.<b>Time Period:</b> 1993-2024.<b>Major Taxa Studied:</b> soil available and total zinc.<b>Methods:</b> This study integrated a global dataset comprising 1,240 paired observations of soil available zinc and 364 paired observations of soil total zinc. The effects of eight fertilizer types (chemical fertilizer [CF], composting, manure, zinc fertilizer, CF combined with composting [CFC], manure [CFM], zinc fertilizer [CFZn], and composting plus zinc fertilizer [CZn]) on the soil available and total zinc content were assessed by meta-analysis. Subsequently, environmental variables were then grouped into five categories, namely climate, biological factors, topographic factors, management measures, and soil properties, to determine which categories had the most significant influence on soil zinc content under different fertilization treatments.<b>Results:</b> The results indicated that soil available zinc content increased significantly under CZn (158.26%), CFZn (134.36%), zinc fertilizer (133.24%), CFM (83.57%), manure (77.89%), CFC (43.29%), and composting (35.40%). Additionally, manure, CFM, zinc fertilizer, CFZn, and CZn treatments significantly enhanced soil total zinc content, with increases ranging from 25.04% to 32.29%. Soil available zinc content increased with fertilizer rates of CFC, CFM, and zinc fertilizer. Among crops, wheat responded more strongly to the enrichment of soil available zinc, whereas rice showed a great tendency to accumulate soil total zinc. Fertilization intensity, crop types, soil organic carbon, and soil pH emerged as key drivers influencing soil available and total zinc content. Regulating soil zinc through fertilization strategies requires careful consideration of soil organic carbon and pH to promote sustainable agricultural development.
DOI: 10.6084/m9.figshare.8235443.v1
title: Astec-Pm2 (Wild type Phallusia mammillata embryo, live SPIM imaging, stages 8-15)

description: Astec-Pm2 Live embryonic development of Phallusia mammillata (Phlebobranch ascidian). <br><br>Cell membranes were fluorescently labeled by microinjection of mRNA encoding PH-GFP into unfertilized egg. The embryo has been live imaged with a MuVi-SPIM for three hours, from the 64-cell stage (Tp 1, St. 8) up to the mid neurula (Tp 93, St. 15), at 18°C.<br>Whole cells were segmented using the ASTEC pipeline. Surface meshes were produced using the VTK library and MeshLab.<br><br>The period between time points is 89 seconds after normalization on the average development at 18°C.<br>* The four angle fusion images obtained using the ASTEC pipeline are shared in .inr format (fuse.tar.gz archive file).<br>* Whole cells were segmented using the ASTEC pipeline and shared in .inr format (post.tar.gz archive file).<br>* Surface meshes (.obj) povided in the mesh.tar.gz archive were produced using the VTK library and MeshLab.<br>* Individual cell geometric properties are shared in two different formats, .xml and .pkl (properties.tar.gz archive file).
DOI: 10.60893/figshare.apl.27236211.v1
title: Supplementary Material

description: 1. Current-voltage I-V characteristic of Ni/ReS2/Ni structure
2. ReS2/Si energy barrier extraction from I-V-T measurements
3. Photoresponse in Ni/Si Schottky diode
4. Responsivity maps as functions of external bias and incident power 
5. Photoresponse under switching light at negative bias voltage 
6. Transient photovoltage at zero current 
7. Nonequilibrium Green's function (NEGF) calculations 
8. Equilibrium band diagram of the Ni/Si structure 
9. Experimental details
DOI: 10.17632/b36vz2ms3d
title: Local Time Dependence of Jupiter's Polar Auroral Emission Observed by Juno UVS:  Juno UVS Auroral Images

description: The in this archive are the brightness and color ratio maps of the 101 spin integrated maps produced from the UVS instrument on the Juno Mission through the first 13 orbits as well as the indiviual frames of the movie S5 of the supplementary material.  There are two main directories.  The main_paper_images directory contains 7 subdirectories, one for each figure in the main text.  The supplemental_images directory contains 3 sub-directories; 1) movie, which contains the individual data for each frame of the movie, 2) north, which contains all 101 spin average images of the north pole of Jupiter, and 3) south, which contains all 101 spin average images of the south pole of Jupiter.  Each idl save file contains four arrays: 1) brightness_map (kR), 2) color_raio_map, 3) latitude_map (System III, degrees), and 4) longitude_map (System III west, degrees).  In addition, we have written out the same data in fits format with the brightness map as extension 1, the color ratio map as extension 2, the latitude maps is in extension 3 and the longitude map is in extension 4.   These data are in support JGR Planets paper "Local Time Dependence of Jupiter's Polar Auroral Emission Observed by Juno UVS" by Greathouse et al.
DOI: 10.6084/m9.figshare.13079675.v1
title: Data of "Ecological Status of a Freshwater Tectonic Lake of the Indo-Burmese Province: implications for livelihood development"

description: Data uploaded here is related to the paper entitled, Ecological Status of a Freshwater Tectonic Lake of Indo-Burmese Province: implication for livelihood development. Data were collected in Meghalaya, India
DOI: 10.6084/m9.figshare.14893398.v1
title: SoilHet2_Plot_SpeciesComposition

description: SoilHet2 Plot species composition. Data was collected each year during the month of August beginning in 2018. Plots are 4.6m x 4m and plant abundance was recorded using percent cover. Plots are divided into either 120 40cm x 40cm patches or 480 20cm x 20cm patches. These patches were used to create different forms of heterogeneity that would be visible at the plot level. The percent cover used in this data set is relative to the whole plot and not an individual patch. For a brief overview: we tested how the spatial pattern of seed arrival (aggregated versus uniform seed mixtures), soil heterogeneity, and patch size influence species richness in grassland plant communities in south-central Kansas. We established 96, 4x4.8 m plots each divided into 120 large-scale (0.4x0.4 m) or 480 small-scale (0.2x0.2 m) patches. We then excavated, mixed, and redistributed soil within each plot to create either homogenous or heterogeneous soil conditions. Finally, seeds from 40 species were then sown with either one species per soil patch, to create aggregated species distributions within plots, or were sown uniformly across plots.
DOI: 10.6084/m9.figshare.14994837.v1
title: Dataset on gaming impact on mental health

description: dataset is collected to use in the research paper, using questionnaire technique populating the teenagers of China to know the impact of gaming on teenagers.
DOI: 10.6084/m9.figshare.825947.v2
title: Geoindex JISC UK Web Domain Dataset (1996-2010) Sum of Year and domain by UK Post Area

description: Data is aggregated to UK post area from: Geoindex JISC UK Web Domain Dataset. Counts of postcodes are summed by year of archive.org instance and sub-domain e.g. .ac.uk About the Geoindex http://dx.doi.org/10.5259/ukwa.ds.2/geo/1 The ~2.5 billion 200 OK responses in the JISC UK Web Domain Dataset (1996-2010) dataset have been scanned for geographic references - specifically postcodes. This set of postcode citations, found at particular URLs, crawled at particular times, forms an historical geoindex of the UK web. For more details about how the data was created, its format, and how to use it, see here. The geoindex is composed of some 700,641,549 lines of TSV data, each asserting that a given web page, crawled at a given data, contained one or more references to a given postcode.
DOI: 10.17632/9h3vjvn2ms
title: 2-D and 3-D Geodynamic modoelling results: Rheological inheritance and rift segmentation in the Labrador Sea

description: Here, we use observations from the Labrador Sea to constrain thermal-mechanical simulations of continental rifting. The aimis to investigate the effects of inherited variable lithospheric properties on margin segmentation. These 2-D and 3-D models demonstrate that N-S variations in lithospheric thickness, crustal structure, and rheology within the pre-rift Canadian Shield produce sharp gradients in rifted margin width and the timing of breakup, leading to strong margin segmentation during rifting and continental breakup. See our preprint (DOI) and the peer-reviewed paper (DOI) for more details.
DOI: 10.17632/f9wrnpdwc5
title: BIFs from the Hugushan iron deposit

description: Table 1: Major (%), trace and rare earth element (ppm) compositions of BIFs from the Hugushan iron deposit.
Table 2: Fe isotope compositions of BIFs from the Hugushan iron deposit.
Table 3: O and Si isotope compositions of BIFs from the Hugushan iron deposit
DOI: 10.17632/krktjxvmgs
title: Prevalence of depressive symptoms among antenatal women with and without GDM: a hospital-based cross-sectional study in Govt Kilpauk Medical College Hospital

description: Research aim was to determine if antenatal women with Gestational diabetes mellitus (GDM) have a higher prevalence of symptoms of depression compared to antenatal women without Gestational diabetes mellitus (non-GDM). The secondary aim of our study was to compare sociodemographic and other common factors associated with depression during antenatal period. 

A comparative cross-sectional study was carried out on 281 patients (132 GDM diagnosed and 149 Non GDM) selected from an academic medical centre. The study included antenatal women in their second and third trimester. Diagnosis of GDM was based on – Diabetes in Pregnancy Study Group India (DIPSI) criteria and depressive symptoms measured using the Edinburgh Postnatal Depression Scale (EPDS) with a cut off of more than equal to 11. 

The study group included antenatal women diagnosed with Gestational diabetes mellitus (based on DIPSI Criteria, 2 hours postprandial more than equal to 140 mg/dl), above the age of 18, in their second trimester and onwards, attending regular antenatal check-ups at tertiary hospital and able to provide informed consent were enrolled in this study. The comparative group were antenatal women not diagnosed with gestational diabetes mellitus, above the age of 18, in their second trimester and onwards, attending regular antenatal check-ups at tertiary hospitals and able to provide informed consent. The exclusion criteria included antenatal women with a previous history of diabetes (pre-gestational diabetes mellitus), women with bad obstetric history, women experiencing domestic violence, pregnant women who refused consent, pregnant women who are severely ill, pregnant women on antipsychotic medications or steroids and women with a history of drug abuse, alcohol or smoking.

Results: The cross-sectional study was performed on 281 patients (132 GDM diagnosed and 149 NON GDM) with a mean age of 26.36 (SD =4.4284). Prevalence of antenatal women with symptoms of depression in the total sample population were 28.1%. The prevalence of antenatal women with symptoms of depression in GDM group was 38.6% and 18.8% in antenatal women without GDM which was statistically significant. Overall, results suggest that depressive symptoms are more common in GDM patients compared to non-GDM patients [38.6% vs 18.8%, odds ratio (OR) = 2.72, 95% CI 1.59-4.67, p &lt; 0.001]. 

Independent sample T-test indicated the EPDS score in GDM Antenatal mothers [(Mean =9.5, SD = 4.96)] is significantly higher compared to EPDS score in non-GDM Antenatal mothers [(Mean = 6.06, SD = 4.98)] (t (279) = -5.785, p = 0.000). There is no significant association between prevalence of depressive symptoms in GDM patients taking insulin or meal plan. (p value &gt; 0.05) using chi square statistical analysis.
DOI: 10.6084/m9.figshare.7932326.v1
title: Super-resolution single molecule localization microscopy (SMLM) data of caveolin-1 (Cav1) protein in prostate cancer cells (PC3). Identifying SMLM Cav1 domains using deep learning.

description: Super-resolution single molecule localization microscopy (SMLM) data of caveolin-1 (Cav1) protein. Our dataset consists of two populations of prostate cancer (PC3) cells. In every cell, we have super-resolution SMLM images for the localization of the Cav1 proteins. Specifically, PC3 and CAVIN1/PTRF transfected PC3 cells (also called PC3-PTRF). The PC3-PTRF population comes with the wide-field CAVIN1/PTRF mask images. The goal is to study the clusters of the Cav1 in the two populations and automatically identify the Cav1 molecular domains and complexes (Caveolae and scaffolds) using the machine and deep learning models using various data representations (3D point cloud, hand-crafted features, multi-view projections, etc.). The Cav1 clusters are pre-processed and extracted by processing the 3D point cloud data using Khater et. al., 2018 method "<i>3D SMLM Network Analysis</i>" pipeline (https://www.nature.com/articles/s41598-018-27216-4)
DOI: 10.6084/m9.figshare.915406.v2
title: Atomistic origins of high performance in hybrid halide perovskite solar cels

description: Data set as complement to paper on "Atomistic origins of high-performance in hybrid halide perovskite solar cells" http://pubs.acs.org/doi/abs/10.1021/nl500390f