cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/wyys4gvk4n
title: Data for: Peripapillary Retinal Nerve Fiber Layer Thinning in Genetic Generalized Epilepsy

description: Appendix 1: Clinical characteristics. The RFNL thickness in each of the 90º quadrants (i.e., superior, inferior, temporal, and nasal) around the optic disc of both left and right eyes (calculated automatically by the device software)
DOI: 10.6084/m9.figshare.24973407.v1
title: Supplementary Material for: Mask CPAP Increases Diaphragm Thickening Fraction in Healthy Subjects

description: Introduction
The most widespread treatment for obstructive sleep apnoea and obesity hypoventilation syndrome is continuous positive airway pressure (CPAP). The addition of inspiratory support is a potential alternative. This is a physiological study to determine the effect of CPAP and inspiratory support pressure on respiratory effort measured by diaphragm thickening fraction (DTF) in healthy volunteers.
Methods
DTF was measured in spontaneously breathing, healthy volunteers during 4 phases: (I) Without connection to a ventilator, (II) on a ventilator without any applied pressures, (III) with continuous positive airway pressure of 5 cmH2O and (IV) with additional inspiratory support pressure of 5 cmH2O.
Results 
29 individuals agreed to participate. DTF was similar during the first two phases (32 ± 13 % and 35 ± 22 %). A considerable increase in DTF to 51 ± 21 % was noted in phase III. The introduction of inspiratory support pressure during phase IV led to a reduction in DTF back to 36 ± 23 % (p &lt; 0.001). Tidal volume and minute ventilation were both slightly higher in phase IV compared to phase III.
Conclusion 
Continuous positive airway pressure without inspiratory support pressure increases respiratory effort measured by DTF in healthy subjects. Further research is required to investigate this phenomenon in a clinical setting.
DOI: 10.6084/m9.figshare.26082916.v1
title: 3UTRBERT_dataset_availability

description: This package includes the datasets used in the manuscript named "Deciphering 3’ UTR mediated gene regulation using interpretable deep representation learning"
DOI: 10.6084/m9.figshare.27601101.v6
title: Children and Adolescents Meibomian Glands (CAMG) Dataset

description: This dataset includes 1,114 infrared images of upper eyelid meibomian glands collected between June 2020 and July 2024 in 600 participants aged 4 to 18 years. Images were pre-processed including denoising and normalized and manually annotated by 3 junior ophthalmologists and 1 senior ophthalmologist. Subsequently, segmentation is performed using an AI algorithm, and the results are reviewed and corrected by an experienced ophthalmologist. The dataset also includes demographic data and various quantitative parameters of meibomian glands. In addition, we also provide meibomian gland parameters for children and adolescents of different ages and genders to inform clinical practice.
DOI: 10.17632/562fjb2b5y
title: DATASET OF TYPE 2 DIABETES MELLITUS PATIENTS WITH GAS GANGRENE PEDIC COMPLICATED WITH OSTEOMYELITIS, OSTEONECROSIS, & CHARCOT-MARIE TOOTH

description: •Data doc. provide information about patient biodata related to age and gender. The final data also contains patient diagnoses, laboratory examination results, RDP and RP medicine, as well as complications. •Sheet Complications (.xlsx), of type 2 diabetes mellitus patients with gas gangrene pedi .xlsx provides information about the types of complications experienced by patients. These complications include Wagner Grade •Sheet Laboratory Tests (.xlsx), contains Complete blood count and Bacterial culture data •DM Therapy Sheet (.xlsx), contains types of DM treatment therapy based on Wagner grade •Sheet Therapy Diabetic Foot (.xlsx), contains operative therapy for diabetic foot based on Wagner grade This study aims to describe Suffering Therapy Type 2 Diabetes Mellitus with Gas Gangrene Pedis Complicated by Osteomyelitis, Osteonecrosis, and Charcot-Marie tooth. This study aims to describe information on Suffering Therapy Type 2 Diabetes Mellitus with Gas Gangrene Pedis Complicated by Osteomyelitis, Osteonecrosis, and Charcot-Marie Tooth obtained from the results of secondary data research at Bhayangkara Kediri Hospital for the period January 2021 - March 2022. This dataset can be used as a tool to determine appropriate treatment for patients diagnosed with type 2 diabetes mellitus and gas gangrene pedis
DOI: 10.6084/m9.figshare.13150400.v1
title: Supplementary Material to Resolving Cryptic Species Complexes in Marine Protists: Phylogenetic Haplotype Networks meet Global DNA Metabarcoding Datasets.

description: The file "scripts.txt" includes the scripts for fasta extraction from Tara Oceans dataset and generation of heatmaps and distribution maps.The nexus files "input_network_OSD" and "input_network_OSD-V9_Tara_Oceans" are the input files for phylogenetic networks.The fasta files "V4_OSD_curvi_validated.fasta" and "V9_TARA_LW_curvi_validated.fasta" contain the validated <i>Chaetoceros curvisetus</i> sequences from OSD and OSD-V9+Tara Oceans data.The Excel file "OSD_plus_OSD-V9_Tara_abundance_tables" contains the abundance table for the OSD and OSD-V9+Tara Oceans <i>Chaetoceros curvisetus</i> validated sequences.
DOI: 10.6084/m9.figshare.27932079.v1
title: Supplementary Data File - Nat. Comm. 2024.pptx

description: Supplementary Data
DOI: 10.6084/m9.figshare.28633853.v4
title: Compiled Numerical Values

description: Research in Microbial Genetics (Sporulation)
DOI: 10.6084/m9.figshare.5554546.v1
title: Experiment FREEFORM-SubjectB-151111-2States

description: Experiment in which subject voluntary left or right hand key strokes, whereas EEG recording and key strokes recording were performed.
DOI: 10.6084/m9.figshare.14406989.v1
title: Supplementary Material for: Early, Postnatal Pulmonary Hypertension Severity Predicts Inpatient Outcomes in Congenital Diaphragmatic Hernia

description: <b><i>Introduction:</i></b> Pulmonary hypertension (PH) is the major pathophysiologic consequence of congenital diaphragmatic hernia (CDH). We aimed to evaluate the association between early CDH-associated PH (CDH-PH) and inpatient outcomes. <b><i>Methods:</i></b> The CDH Study Group registry was queried for infants born 2015–2019 with echocardiograms before 48h of life. PH was categorized using echocardiographic findings: none, mild (right ventricular systolic pressure &lt;2/3 systemic), moderate (between 2/3 systemic and systemic), or severe (supra-systemic). Univariate and multivariate analyses were performed. Adjusted Poisson regression was used to assess the primary composite outcome of mortality or oxygen support at 30 days. <b><i>Results:</i></b> Of 1,472 patients, 86.5% had CDH-PH: 13.9% mild (<i>n</i> = 193), 44.4% moderate (<i>n</i> = 631), and 33.2% severe (<i>n</i> = 468). On adjusted analysis, the primary outcome of mortality or oxygen support at 30 days occurred more frequently in infants with moderate (incidence rate ratio [IRR] 1.8, 95% confidence interval [CI], 1.2–2.6) and severe CDH-PH (IRR 2.0, 95% CI, 1.3–2.9). Extracorporeal life support (ECLS) utilization was associated only with severe CDH-PH after adjustment (IRR 1.8, 95% CI, 1.0–3.3). <b><i>Discussion/Conclusion:</i></b> Early, postnatal CDH-PH is independently associated with increased risk for mortality or oxygen support at 30 days and utilization of ECLS. Early echocardiogram is a valuable prognostic tool for early, inpatient outcomes in neonates with CDH.
DOI: 10.6084/m9.figshare.28255694.v1
title: Staphylococcus pseudointermedius wgMLST scheme.

description: Backup of BioNumerics Staphylococcus pseudointermedius wgMLST scheme.
DOI: 10.6084/m9.figshare.7258199.v1
title: Supplementary Material for: Adolescent-Onset Hidradenitis Suppurativa: Prevalence, Risk Factors and Disease Features

description: <b><i>Background/Aims:</i></b> Hidradenitis suppurativa (HS) is a chronic inflammatory and destructive skin disorder. Early diagnosis and treatment are critical to stop its progression. Data concerning adolescent-onset HS are scarce. The aims of this study are to describe the prevalence of adolescent-onset HS and to explore potential risk factors and the disease features of these patients. <b><i>Patients and Methods:</i></b> A cross-sectional study including 134 patients was performed. <b><i>Results:</i></b> Adolescent-onset HS occurred in 51.5% (69/134) of patients. Adolescent-onset HS was associated with female sex, positive family history, presence of pilonidal sinus, acne conglobata, longer disease duration and a worse perception of disease severity. <b><i>Conclusion:</i></b> Adolescent-onset HS might be more frequent than previously reported. Female sex, positive family history and the presence of elements of the follicular occlusion tetrad identify individuals with a higher risk of early onset. These patients experience a longer disease duration and perceive their disease as severer.
DOI: 10.17632/f5f4hhm69m
title: The development and potent antitumor efficacy of CD44/CD133 dual-targeting IL7Rα-armored CAR-T cells against glioblastoma

description: The scRNA-seq data of CAR-T-glioblastoma organoid co-culturing.
DOI: 10.17632/zcm6rnv9bb
title: Relative deprivation leads to the endorsement of “anti-chicken soup” in China

description: This research contains two data. Data-Study 1 is the data of study 1 and Data-Study 2 is the data of study 2.
DOI: 10.6084/m9.figshare.17086670.v1
title: Sentence formulation is easier when thematic and syntactic prominence align: evidence from psych verbs

description: We use the visual world eye-tracking paradigm to investigate how the mapping from thematic event structures to grammatical structures, known as sentence formulation, unfolds during real time sentence production. Experiment 1 contrasted production of SubjExp (<i>“Leslie<sub>EXP</sub> loves Ann<sub>STIM</sub>”</i>) versus ObjExp <i>(“Leslie<sub>STIM</sub> scares Ann<sub>EXP</sub>”)</i> sentences. Experiment 2 investigated passivized SubjExp <i>(“Leslie<sub>STIM</sub> was loved by Ann<sub>EXP</sub>”)</i> and passivized ObjExp sentences <i>(“Leslie<sub>EXP</sub> was scared by Ann<sub>STIM</sub>.”)</i>. In both studies, we found that speakers were faster to begin speaking and to preferentially fixate the subject when they were able to assign the thematically prominent Experiencer role to the subject of the sentence. We conclude that sentence formulation is easier when speakers can make use of a tight, systematic correspondence between event structures and linguistic structures. We discuss the implications of our work for the relationship between language and thought and for the formal accounts of SubjExp and ObjExp verbs.
DOI: 10.6084/m9.figshare.9978788.v1
title: Mongolian gerbil genome annotation

description: coding sequences and predicted proteins are shown in this database as well as the .gff file to describe the data.
DOI: 10.60893/figshare.apl.28183607.v1
title: Supplemental Materials

description: The experimental methods, including the synthesis of the large/small CDs, the LSC fabrication, the characterizations and calculations. The TEM pictures for CDs and CdSe dots with similar size. The FTIR and XPS characterizations of CDs. The calcium ion precipitation experiment. Dependency of PL spectra with excitation wavelength for the large/small CDs. The design process of reverse engineering method. The LSC fabrication process. The detailed performances statistic of published CDs LSC works. The detailed parameters of the multi-film coating.
DOI: 10.17632/94gx6gpf5j
title: Employee Well-being, Social Networks, and The Great Resignation

description: Dataset for "Employee Well-being, Social Networks, and The Great Resignation: Exploring Paths to Retention"
DOI: 10.6084/m9.figshare.14233928.v1
title: Cognition, depressive symptoms, functional capacity and frailty in institutionalized elderly

description: This database presents results of two research projects carried out in four Brazilian long-term institutions, 3 in the city of Rio de Janeiro (RJ) and 1 in Montes Claros (MG) between the years 2015 and 2018. The sample comprises 67 elderly, data were collected on age, sex, global cognition (Brazilian version of the Mini Mental State Examination - MEEM) (Bertolucci et al., 1994), frailty syndrome (SF) based on the criteria proposed by Fried et al. , 2001, depressive symptoms through the Brazilian version Geriatric Depression Scale (GDS) (De Sousa et al., 2007). Still, for the evaluation of memory, the tests of verbal fluency (FV) were used in order to evaluate the semantic memory and the executive function (Brucki, S. M. et al., 1997); Digit Span Forward (DSF) and Backward (DSB) to check short-term and working memory, respectively (Schroeder, R. W. et al., 2012). The inclusion criteria were: i) being a resident of a long-term institution; ii) be 60 years of age or older; iii) understand and answer commands. The exclusion criteria were: i) dependent walking; ii) severe cardiovascular and neurological diseases. Following the ethical precepts, the projects were approved by their respective Research Ethics Committees, according to the place and period of collection, which are: Research Ethics Committee of the Universidade Federal Fluminense, under the registration 1,178,067 in the year of 2015 and by the Research Ethics Committee of the State University of Montes Claros under opinion 2,398,863 in the year 2017. All participants or their guardians signed the informed consent form in accordance with resolution 466/2012 of the National Council of Health in Brazil.
DOI: 10.6084/m9.figshare.19210188.v2
title: Mexican hospitality sector indicators 1992-2018

description: This dataset inlcudes monthly tourism indicators of the Mexican hospitality sector from 1992 to 2018.
DOI: 10.6084/m9.figshare.19620102.v1
title: RNAscope data

description: Cropped and annotated image data used for RNAscope quanitification
DOI: 10.6084/m9.figshare.24782490.v1
title: Age and Growth of the Blue Shark Prionace glauca (Linnaeus, 1758) in the Ecuadorian Pacific: Bayesian Multi-Models.xlsx

description: The blue shark <i>Prionace glauca</i> plays a critical role as a predator in marine ecosystems but is threatened by bycatch. To obtain more precise biological data, a Bayesian approach was used, and 536 vertebrae samples collected during one year at the landing stage called "Playita Mía" Manta, Ecuador, were analyzed. The objective was to estimate the age and growth parameters of the species. The sizes of the specimens varied between 116 and 310 cm in total length (TL). Using a Bayesian approach based on the Markov Chain Monte Carlo (MCMC) method, growth parameters were evaluated. The von Bertalanffy model was the one that best fitted the data and provided more adequate estimates (females:=325.50 cm,=53.23 cm and <i>k</i>=0.12 years, males:=331.47 cm,=51.59 cm, <i>k</i>=0.12 years −1; combined sexes:=329.65 cm,=53.64 cm, <i>k</i>=0.11 year−1). The results indicated that females and males have a similar growth, and that the species has a slow growth. Further studies using multi-model Bayesian approaches and covering a broader range of sizes in the Pacific Ocean are suggested. These studies will provide crucial information for the management and conservation of this species.
DOI: 10.6084/m9.figshare.25039625.v1
title: <b>Sexual conflict in red deer: male-male competition can delay the reproductive phenology of younger females</b>

description: Investigating factors related to reproductive phenology is of particular interest in mammals with long gestation times, as the optimal adjustment of the timing of births depends on factors that occur much earlier. In Mediterranean environments, delays in conception timing in red deer populations, mainly due to climatic and demographic factors, lead to a mismatch between resource availability and the energy needs of hinds and offspring. In this polygynous species, the sex and age structure of populations determines the level of intrasexual competition, and the mating attempts of males may affect the behaviour and spatial distribution of females. In this paper, we used data from 14 years of females harvested in hunting actions in several estates with different population structures and, therefore, different levels of mate competition between males. The main aim was to explore the factors underlying variation in mating dates considering individual female and population characteristics. We found that the age and body condition of females are the main variables determining the mating date. However, our results showed a greater asynchrony in populations where mate competition is intense. Younger females suffer a delay in the mating date where intrasexual competition between males is high. These results point to a situation of conflict between the sexes, in which the behaviour of males to maximise their mating success may entail costs for the reproduction of females, which in turn is an example of the negative effects of a component of sexual selection on population dynamics.
DOI: 10.6084/m9.figshare.25241977.v1
title: Simulationdata

description: The files contains power network and transportation network data.
DOI: 10.6084/m9.figshare.25249810.v1
title: Simulation - Brownian dynamics

description: Brownian dynamics
DOI: 10.6084/m9.figshare.3524747.v1
title: Appendix C. A description of the design of the sequential multiple predator experiment.

description: A description of the design of the sequential multiple predator experiment.
DOI: 10.6084/m9.figshare.21936938.v2
title: Code and data for "Value chain carbon footprints of Chinese listed companies"

description: Measuring the value chain carbon footprints of listed companies is essential for cumulative climate actions and climate-efficient capital allocation. We trace the carbon emissions embodied in the value chains of listed companies in China and find that there is an increasing trend in terms of the carbon footprints of listed companies over the period 2010-2019. In 2019, the direct emissions from these companies reached 1.9 billion tonnes, accounting for 18.3% of national emissions. The indirect emissions were well over twice as large as the direct emissions from 2010 to 2019. Energy, construction and finance companies tend to have a greater volume of value chain carbon footprints, yet the distribution of their carbon footprints varies significantly. Finally, we apply the results to evaluate the financed emissions of leading asset managers' equity portfolio investment in China's stock market.
DOI: 10.6084/m9.figshare.25308250.v1
title: Data from marine radar counts of marbled murrelets (<i>Brachyramphus marmoratus</i>) in British Columbia, Canada

description: The marbled murrelet is a small seabird found in the North Pacific. Marbled murrelets spend most of their time at sea, foraging for small prey underwater, but also have been observed in freshwater lakes near nesting sites. They breed in old-growth forests along the coast, and during the breeding season move between the ocean to forest during dawn and dusk. The marbled murrelet is listed as threatened under the Canadian Species at Risk Act primarily due to loss of old growth nesting habitat. Beginning in 1996 and ongoing, this monitoring project aims to monitor trends of marbled murrelets across British Columbia and within six designated conservation regions along the BC coast. Birds are detected and counted during dawn transits between ocean and forest using radar stations at specific sites (see Resources and Data collection & use pages for more detail).This repository contains the following five files:<b>mamu-count-data</b><b> </b>(csv, txt): count data from marbled murrelet surveys from 1996-2018, where each line represents a survey.<b>mamu-count-metdata</b> (csv, txt): metadata explaining all variables in the dataset.<b>README</b> (txt): important contextual information describing study design, spatial and temporal characteristics, data use license, authors, and acknowledgements.Supplementary information can be accessed at the Marbled Murrelets OSF page: https://doi.org/10.17605/OSF.IO/ZSG63
DOI: 10.6084/m9.figshare.25958806.v1
title: Human endoderm dataset

description: Human endoderm dataset used for benchmarking feature selection for integration in H5AD format. Files contain the full raw dataset, the processed batches used to create the reference and the processed batches used as a query.Note: These files have been saved with compression to reduce file size. Re-saving without compression will reduce reading times if needed.If used, please cite:<br>Yu Q, Kilik U, Holloway EM, Tsai Y-H, Harmel C, Wu A, et al. Charting human development using a multi-endodermal organ atlas and organoid models. Cell. 2021;184:3281–98.e22. Available from: http://dx.doi.org/10.1016/j.cell.2021.04.028<br>
DOI: 10.6084/m9.figshare.29120426.v1
title: Replication datasets for Classification of soft decision-making methods via fuzzy parameterized fuzzy soft matrices and their performance-based statistical analysis in machine learning

description: Replication datasets for Classification of soft decision-making methods via fuzzy parameterized fuzzy soft matrices and their performance-based statistical analysis in machine learning
DOI: 10.17632/9972jsjsrw
title: PRISMA-ScR - Checklist for Study Titled : Occupation-related antecedents, job-related outcomes, and intervening factors of mental health disorders among food handlers: A scoping review protocol

description: A systematic review protocol as per PRISMA -ScR
DOI: 10.17632/j7phmtjmtj
title: Enhancing Pink Esthetic and Radiological scores around Immediate Implants Placed in Esthetic Zone - Socket Shield Technique versus Immediate Conventional Technique: A clinical study

description: Supporting data for the article "Enhancing Pink Esthetic and Radiological scores around Immediate Implants Placed in Esthetic Zone - Socket Shield Technique versus Immediate Conventional Technique: A clinical study" applied for publication
DOI: 10.17632/jy7n6vpd9j
title: Source data for "Norepinephrine-mediated slow vasomotion drives glymphatic clearance during sleep"

description: All source data for figures and supplementary figures in the article "Norepinephrine-mediated slow vasomotion drives glymphatic clearance during sleep" are uploaded as Prism files. Each figure has its own file with source data and corresponding figures.
Example MATLAB workspaces with fiber photometry and EEG/EMG traces are uploaded from one mouse with albumin labelling CSF tracer and one mouse with albumin labelling and norepinephrine sensor. See corresponding readme files for information on files in the workspace.
Code for analyzing data in the workspaces can be found at https://github.com/NHauglund/Fiber-photometry-analysis.