cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2bplh4
title: CCDC 2165706: Experimental Crystal Structure Determination

description: Related Article: Ryo Inoue, Riki Kondo, Yasuhiro Morisaki|2022|Chem.Mater.|34|7959|doi:10.1021/acs.chemmater.2c01817
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bsvyy
title: CCDC 2168851: Experimental Crystal Structure Determination

description: Related Article: Xusheng Zhang, Yan Xiong, Kunjie Liu, Na Wang, Liubing Fan, Weiwei Li, Xiaobin Zhao, Jing Zhao, Quanlin Liu|2022|J.Mater.Chem.C|10|13137|doi:10.1039/D2TC02838G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25810/558f-c477.53
title: Australian Newspaper Coverage of Climate Change or Global Warming, 2000-2022 - August 2022

description: The Media and Climate Change Observatory Data monitors 126 sources (across newspapers, radio and TV) in 58 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.25318/9810017501-eng
title: Mother tongue by knowledge of official languages: Canada, provinces and territories, census metropolitan areas and census agglomerations with parts

description: Data on mother tongue, knowledge of official languages, gender and age for the population excluding institutional residents for Canada, provinces and territories, census metropolitan areas and census agglomerations.
DOI: 10.18112/openneuro.ds004271.v1.1.0
title: gaze_exp
DOI: 10.5281/zenodo.7102581
title: Supplemental datasets for GeneticsMakie.jl — ancestry LD reference panels

description: This datasets contains the LD reference panels for the following ancestry groups that can be used for the <code>GeneticsMakie.jl</code> (doi: https://doi.org/10.1101/2022.04.18.488573). The folder also contains the scripts that demonstrates the process of preparing the LD panels from the downloading step. The original LD panels were downloaded from the 1000 genomes project (Phase3, GRCh37) website. The ancestry notation is as follow: AFR: African AMR: American EAS: East Asian EUR: European SAS: South Asian Short descriptions of the scripts and the logs directory <code>1.download_and_prep_1kg_ld_panels.sh</code>: downloads and removes unnecessary SNPs (e.g. duplicated SNPs, SNPs have long indels) <code>2.filter_ld_panels_for_each_ancestry.ipynb</code>: prepares LD reference panels for each ancestry group with maf &gt; 0.05 and mac &gt; 1 using <code>Julia</code> <code>3.optional_sort_files.sh</code>: optionally, this script sorts the files by ancestry groups <code>logs</code> directory: for each chromosome, the log file shows the number of samples and SNPs before and after the process for each ancestry group
DOI: 10.5281/zenodo.7102580
title: Supplemental datasets for GeneticsMakie.jl — ancestry LD reference panels

description: This datasets contains the LD reference panels for the following ancestry groups that can be used for the <code>GeneticsMakie.jl</code> (doi: https://doi.org/10.1101/2022.04.18.488573). The folder also contains the scripts that demonstrates the process of preparing the LD panels from the downloading step. The original LD panels were downloaded from the 1000 genomes project (Phase3, GRCh37) website. The ancestry notation is as follow: AFR: African AMR: American EAS: East Asian EUR: European SAS: South Asian Short descriptions of the scripts and the logs directory <code>1.download_and_prep_1kg_ld_panels.sh</code>: downloads and removes unnecessary SNPs (e.g. duplicated SNPs, SNPs have long indels) <code>2.filter_ld_panels_for_each_ancestry.ipynb</code>: prepares LD reference panels for each ancestry group with maf &gt; 0.05 and mac &gt; 1 using <code>Julia</code> <code>3.optional_sort_files.sh</code>: optionally, this script sorts the files by ancestry groups <code>logs</code> directory: for each chromosome, the log file shows the number of samples and SNPs before and after the process for each ancestry group
DOI: 10.25318/9810017501-fra
title: Langue maternelle selon la connaissance des langues officielles : Canada, provinces et territoires, régions métropolitaines de recensement et agglomérations de recensement y compris les parties

description: Données sur la langue maternelle, la connaissance des langues officielles, le genre et l'âge pour la population, à l’exclusion des résidents institutionnels pour Canada, provinces et territoires, régions métropolitaines de recensement et agglomérations de recensement.
DOI: 10.25318/9810017601-eng
title: Mother tongue by knowledge of official languages: Census metropolitan areas, tracted census agglomerations and census tracts

description: Data on mother tongue, knowledge of official languages, gender and age for the population excluding institutional residents for census metropolitan areas, tracted census agglomerations and census tracts.
DOI: 10.25318/9810017601-fra
title: Langue maternelle selon la connaissance des langues officielles : Régions métropolitaines de recensement, agglomérations de recensement subdivisées en secteurs de recensement et secteurs de recensement

description: Données sur la langue maternelle, la connaissance des langues officielles, le genre et l'âge pour la population, à l’exclusion des résidents institutionnels pour régions métropolitaines de recensement, agglomérations de recensement subdivisées en secteurs de recensement et secteurs de recensement.
DOI: 10.5683/sp2/qeb9lt
title: Parambikulam Aliyar Project Multi reservoir system inflow data

description: Natural inflows of Parambikulam Aliyar reservoir inflow data based on available data : Simulated data for 1000 years monthly (data files res1-res5)- (see publication1 for more details) and a short set of 12 years of original data (data files inf1orig-inf5orig) - (see publication 2 for more details). For single reservoir data and computer programs see "Sobradinho Reservoir (Brazil) Flow and Dam Data", https://doi.org/10.5683/SP2/SBQFWO, Borealis, V2
DOI: 10.6084/m9.figshare.21187942.v1
title: Mapping of beta catenin interactors using systems biology driven approach

description: The datasets includes the uniprot gene list of all the <em>β-catenin</em> interactors. Secondly, gene ontology annotations obtained by DAVID database were provided. The list of <em>β-catenin</em> interacting genes present in the cytoplasm, the nucleus and in both the components were listed out. Top 10 <em>β-catenin</em> interactors were provided along with their degree-Cytohubba score and the functional aspects of these top genes obtained from GeneMANIA data base were provided. All these datasets supports the original article.
DOI: 10.5683/sp2/sbqfwo
title: Sobradinho Reservoir (Brazil) Flow and Dam Data and Code

description: Natural inflow (monthly inflows into the reservoir for 85 years) and dam data are available.
DOI: 10.25810/es52-xr23.53
title: Canadian Newspaper Coverage of Climate Change or Global Warming, 2000-2022 - August 2022

description: The Media and Climate Change Observatory Data monitors 126 sources (across newspapers, radio and TV) in 58 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.20324865
title: EEL human visual cortex 445 genes spatial RNA data

description: <strong>Raw RNA locations of a visual cortex human brain section produced by EEL FISH for 445 genes.</strong> <br> RNA files are in the .parquet format which can be opened with FISHscale (https://github.com/linnarsson-lab/FISHscale) or any other parquet file reader (https://arrow.apache.org/docs/index.html) <br> <strong>RNA .parquet files</strong> Position and gene label for all RNA molecules. "c_px_microscope_stitched" contains X coordinates. "r_px_microscope_stitched" contians Y coordinates. The unit are pixels with a size of 0.18 micrometer. Multiply by 0.18 to get um scale. <br> "hamming_distance" is the hamming distance divided by the barcode length (16). The closer to 0 the better the barcode. <br> <strong>Gene colors .pkl file</strong> Pickled Python dictionary with gene colors used in the paper.
DOI: 10.6084/m9.figshare.20324865.v2
title: EEL human visual cortex 445 genes RNA spatial data

description: <strong>Raw RNA locations of a visual cortex human brain section produced by EEL FISH for 445 genes.</strong> <br> RNA files are in the .parquet format which can be opened with FISHscale (https://github.com/linnarsson-lab/FISHscale) or any other parquet file reader (https://arrow.apache.org/docs/index.html) <br> <strong>RNA .parquet files</strong> Position and gene label for all RNA molecules. "c_px_microscope_stitched" contains X coordinates. "r_px_microscope_stitched" contians Y coordinates. The unit are pixels with a size of 0.18 micrometer. Multiply by 0.18 to get um scale. <br> "hamming_distance" is the hamming distance divided by the barcode length (16). The closer to 0 the better the barcode. <br> <strong>Gene colors .pkl file</strong> Pickled Python dictionary with gene colors used in the paper.
DOI: 10.6084/m9.figshare.20324820
title: EEL mouse sagittal 440 genes spatial RNA data

description: <strong>Raw RNA locations of a sagittal mouse brain section produced by EEL FISH for 440 genes.</strong> The file contains 11249762 rows and 7 columns. The RNA file is in the .parquet file format which can be opened with FISHscale (https://github.com/linnarsson-lab/FISHscale) or any other parquet file reader (https://arrow.apache.org/docs/index.html). Alternatively, there is also a .csv file with the RNA data. However, it is more that 1GB and the .parquet file will be more efficient. <br> <strong>RNA .parquet or .csv files</strong> Position and gene label for all RNA molecules. "c_px_microscope_stitched" contains X coordinates. "r_px_microscope_stitched" contians Y coordinates. The unit are pixels with a size of 0.18 micrometer. Multiply by 0.18 to get um scale. "c_transformed" contains X coordinates. "r_transformed" contains Y coordinates. The units are pixels with a size of 0.27 micrometer. Multiply by 0.27 to get um scale. These coordinates match the coordinates in the single cell .loom file. "decoded_genes" contains the gene label for each point. Note that there are 8 empty barcodes as negatie controls, labeled "Control1" to "Control8". There is also a gene called "Cre" that is not present in this sample. Please remove controls and Cre before analysing any biological questions. "hamming_distance" is the hamming distance divided by the barcode length (16). The closer to 0 the better the barcode. "Valid" Boolean colum where detected RNA molecules that are inside the tissue section are labeled with a 1. <br> <strong>Tissue polygon .csv file</strong> The .csv flie contains a polygon of the tissue area to clip RNA molecules outside. This was used to generate the "Valid" column. The unit size is in micrometer. <br> <strong>Gene colors .pkl file</strong> Pickled Python dictionary with gene colors used in the paper.
DOI: 10.6084/m9.figshare.20324820.v3
title: EEL mouse sagittal 440 genes RNA spatial data

description: <strong>Raw RNA locations of a sagittal mouse brain section produced by EEL FISH for 440 genes.</strong> RNA files are in the .parquet format which can be opened with FISHscale (https://github.com/linnarsson-lab/FISHscale) or any other parquet file reader (https://arrow.apache.org/docs/index.html) <br> <strong>RNA .parquet files</strong> Position and gene label for all RNA molecules. <br> "c_px_microscope_stitched" contains X coordinates. "r_px_microscope_stitched" contians Y coordinates. The unit are pixels with a size of 0.18 micrometer. Multiply by 0.18 to get um scale. <br> "c_transformed" contains X coordinates. "r_transformed" contains Y coordinates. The units are pixels with a size of 0.27 micrometer. Multiply by 0.27 to get um scale. These coordinates match the coordinates in the single cell .loom file. <br> "hamming_distance" is the hamming distance divided by the barcode length (16). The closer to 0 the better the barcode. <br> <strong>Tissue polygon .csv file</strong> The .csv flie contains a polygon of the tissue area to clip RNA molecules outside. The unit size is in micrometer. <br> <strong>Gene colors .pkl file</strong> Pickled Python dictionary with gene colors used in the paper.
DOI: 10.6084/m9.figshare.20324814
title: EEL mouse sagittal atlas 168 genes spatial RNA data

description: <strong>Raw RNA locations of the mouse atlas produced by EEL FISH for 168 genes.</strong> <br> RNA files are in the .parquet format which can be opened with FISHscale (https://github.com/linnarsson-lab/FISHscale) or any other parquet file reader (https://arrow.apache.org/docs/index.html) <br> <strong>RNA .parquet files</strong> Seven sagittal sections of the mouse brain with 168 detected genes, sampled at the medial-lateral positions of -140 µm, 600 µm, 1200 µm, 1810 µm, 2420 µm, 3000 µm and 3600 µm measured from the midline. Position and gene label for all RNA molecules. "c_px_microscope_stitched" contains X coordinates. "r_px_microscope_stitched" contians Y coordinates. The unit are pixels with a size of 0.18 micrometer. Multiply by 0.18 to get um scale. "Valid" Boolean column where a 1 means that the molecule is detected inside the tissue section. A zero means the molecule is detected outside. <br> <strong>Tissue polygons .csv files</strong> CSV files demarking the sample borders for the 7 mouse atlas sections. -140 µm, 600 µm, 1200 µm, 1810 µm, 2420 µm, 3000 µm, 3600 µm. These polygons were used to generate the "Valid" column. If you want to make your own selection please have a look at the code in: https://github.com/linnarsson-lab/FISHscale/blob/master/FISHscale/utils/inside_polygon.py <br> <strong>Gene colors .pkl file</strong> Pickled Python dictionary with gene colors used in the paper for the mouse atlas.
DOI: 10.6084/m9.figshare.20324814.v3
title: EEL mouse sagittal atlas 168 genes RNA spatial data

description: <strong>Raw RNA locations of the mouse atlas produced by EEL FISH for 168 genes.</strong> <br> RNA files are in the .parquet format which can be opened with FISHscale (https://github.com/linnarsson-lab/FISHscale) or any other parquet file reader (https://arrow.apache.org/docs/index.html) <br> <strong>RNA .parquet files</strong> Seven sagittal sections of the mouse brain with 168 detected genes, sampled at the medial-lateral positions of -140 µm, 600 µm, 1200 µm, 1810 µm, 2420 µm, 3000 µm and 3600 µm measured from the midline. <br> Position and gene label for all RNA molecules. <br> "c_px_microscope_stitched" contains X coordinates. "r_px_microscope_stitched" contians Y coordinates. The unit are pixels with a size of 0.18 micrometer. Multiply by 0.18 to get um scale. <br> <strong>Tissue polygons .csv files</strong> CSV files demarking the sample borders for the 7 mouse atlas sections. -140 µm, 600 µm, 1200 µm, 1810 µm, 2420 µm, 3000 µm, 3600 µm Some RNA molecules are detected outside the tissue area. To remove these you can open the dataset in FISHscale and give it the polygons in the .csv files. If you do not want to use FISHscale, you can use this code to find which points are inside the tissue: https://github.com/linnarsson-lab/FISHscale/blob/master/FISHscale/utils/inside_polygon.py <br> <strong>Gene colors .pkl file</strong> Pickled Python dictionary with gene colors used in the paper for the mouse atlas.
DOI: 10.6084/m9.figshare.20310771
title: EEL Mouse 440 genes single cell data

description: <strong>Cell by gene matrix of the EEL mouse 440 gene experiment.</strong> Single cell data generated by EEL FISH on a saggital mouse brain section. The dataset is available in 3 file formats: .loom Loom file see: http://loompy.org/ .h5ad AnnData file see: https://anndata.readthedocs.io/en/latest/index.html .tab Tab-delimited file. <strong>Metadata</strong> Age - Age of animal. Codebook - Name of EEL codebook. ColorDict - Cell cluster color dictionary. Cycles - Number of barcoding cycles.<br> Expansion - Pixels the nuceli were expanded (pixelsize = 0.27um).<br> Expansion_um - Expansion of nuclei in micrometer.<br> Experiment - Experiment ID.<br> ExperimentDate - Date of experiment.<br> FOVoverlapPercentage - Overlap between field of view.<br> GenerationDate - Loom file generation date.<br> LOOM_SPEC_VERSION - Loompy version.<br> MaxHammingDist - maximum allowed Hamming distance.<br> Operator - Experiment operator.<br> Orientation - Cutting orientation.<br> Probes - Probe sequences file.<br> Protocol - Protocol used.<br> Quality - Manual evaluation of quality.<br> RNAfile - RNA file used<br> Removal - Method of removal of overlapping RNA in overlapping fields of view.<br> Sample - Sample ID<br> Segmentation - Segmentation algorithm.<br> Species - Species of sample.<br> Stitching - Field of view stitching method.<br> StitchingChannel - Between cycle alignment channel.<br> Strain - Strain of animal.<br> System - Microscope system used.<br> Tissue - Tissue in experiment.<br> TotalMolecules - Total number of molecules assigned to cells. <br> <strong>Column metadata</strong> X - X coordinate in pixels of 0.27um (multiply by 0.27 to get micrometer). X_um - X coordinate in micrometer. Y - Y coordinate in pixels of 0.27um (multiply by 0.27 to get micrometer). Y_um - Y coordinate in micrometer. tSNE_X - tSNE component 1. tSNE_Y - tSNE component 2. Clusters - Cluster label of each cell. TotalMolecules - Total molecules per cell. Cluster colors are saved as individual RGB values: R - Red. G - Green. B - Blue. (In the AnnData file, the tSNE and RGB values are availabe as a single array under "obsm" with keys "tSNE" and "RGB" respectively. ) <br> <strong>Row metadata</strong> Gene - Gene name. GeneTotal - Total number of detected molecules per gene.
DOI: 10.6084/m9.figshare.20310771.v2
title: EEL Mouse 440 genes single cell data

description: <strong>Loom file containing the cell by gene table of the EEL mouse 440 gene experiment.</strong> <br> Single cell data generated by EEL FISH on a saggital mouse brain section. .loom files can be opened with: http://loompy.org/ <br> Alternatively there is also a .tab file. <br> <strong>Metadata</strong> Age - Age of animal. Codebook - Name of EEL codebook ColorDict - Cell cluster color dictionary. Cycles - Number of barcoding cycles.<br> Expansion - Pixels the nuceli were expanded (pixelsize = 0.27um)<br> Expansion_um - Expansion of nuclei in micrometer.<br> Experiment - Experiment ID<br> ExperimentDate - Date of experiment<br> FOVoverlapPercentage - Overlap between field of view.<br> GenerationDate - Loom file generation date.<br> LOOM_SPEC_VERSION - Loompy version.<br> MaxHammingDist - maximum allowed Hamming distance.<br> Operator - Experiment operator.<br> Orientation - Cutting orientation.<br> Probes - Probe sequences file.<br> Protocol - Protocol used.<br> Quality - Manual evaluation of quality.<br> RNAfile - RNA file used<br> Removal - Method of removal of overlapping RNA in overlapping fields of view.<br> Sample - Sample ID<br> Segmentation - Segmentation algorithm.<br> Species - Species of sample.<br> Stitching - Field of view stitching method.<br> StitchingChannel - Between cycle alignment channel.<br> Strain - Strain of animal.<br> System - Microscope system used.<br> Tissue - Tissue in experiment.<br> TotalMolecules - Total number of molecules assigned to cells. <br> <strong>Column metadata</strong> X - X coordinate in pixels of 0.27um (multiply by 0.27 to get micrometer) X_um - X coordinate in micrometer. Y - Y coordinate in pixels of 0.27um (multiply by 0.27 to get micrometer) Y_um - Y coordinate in micrometer. tSNE_X - tSNE component 1. tSNE_Y - tSNE component 2. Clusters - Cluster label of each cell. TotalMolecules - Total molecules per cell. Cluster colors are saved as individual RGB values: R - Red. G - Green. B - Blue. <br> <strong>Row metadata</strong> Gene - Gene name GeneTotal - Total number of detected molecules per gene.
DOI: 10.6084/m9.figshare.21189829
title: FULL_Multiling_OK_22_04-24_clean-99.sav

description: Dataset (N=502) - SPSS format & codes. 502 Hungarian language teachers, of whom 57% teach in a bilingual setting and 43% in a monolingual environment.
DOI: 10.6084/m9.figshare.21189829.v1
title: FULL_Multiling_OK_22_04-24_clean-99.sav

description: Dataset (N=502) - SPSS format & codes. 502 Hungarian language teachers, of whom 57% teach in a bilingual setting and 43% in a monolingual environment.
DOI: 10.25318/9810017801-eng
title: Mother tongue by knowledge of official languages: Canada, provinces and territories and economic regions

description: Data on mother tongue, knowledge of official languages, gender and age for the population excluding institutional residents for Canada, provinces, territories and economic regions.
DOI: 10.25318/9810017801-fra
title: Langue maternelle selon la connaissance des langues officielles : Canada, provinces et territoires et régions économiques

description: Données sur la langue maternelle, la connaissance des langues officielles, le genre et l'âge pour la population, à l’exclusion des résidents institutionnels pour le Canada, des provinces et territoires, et des régions économiques.
DOI: 10.6084/m9.figshare.21187942.v2
title: Mapping of beta catenin interactors using systems biology driven approach

description: The datasets includes the uniprot gene list of all the <em>β-catenin</em> interactors. Secondly, gene ontology annotations obtained by DAVID database were provided. The list of <em>β-catenin</em> interacting genes present in the cytoplasm, the nucleus and in both the components were listed out. Top 10 <em>β-catenin</em> interactors were provided along with their degree-Cytohubba score and the functional aspects of these top genes obtained from GeneMANIA data base were provided. All these datasets supports the original article.
DOI: 10.5281/zenodo.7105878
title: EDS and XRF compositional maps of slickenlines from Plan de los Platanos (PP), Big Piute (BP), Waterman Hills (WH) Faults

description: EDS and XRF compositional maps from PP-(AU), BP, and WH samples.
DOI: 10.5281/zenodo.7105877
title: EDS and XRF compositional maps of slickenlines from Plan de los Platanos (PP), Big Piute (BP), Waterman Hills (WH) Faults

description: EDS and XRF compositional maps from PP-(AU), BP, and WH samples.
DOI: 10.25318/9810017901-eng
title: Mother tongue by knowledge of official languages: Canada, provinces and territories and federal electoral districts (2013 Representation Order)

description: Data on mother tongue, knowledge of official languages, gender and age for the population excluding institutional residents for Canada, provinces and territories and federal electoral districts.