cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5885155.v3
title: <i>d</i>-QPSO: A Quantum-Behaved Particle Swarm Technique for Finding <i>D</i>-Optimal Designs With Discrete and Continuous Factors and a Binary Response

description: Identifying optimal designs for generalized linear models with a binary response can be a challenging task, especially when there are both discrete and continuous independent factors in the model. Theoretical results rarely exist for such models, and for the handful that do, they usually come with restrictive assumptions. In this article, we propose the <i>d</i>-QPSO algorithm, a modified version of quantum-behaved particle swarm optimization, to find a variety of <i>D</i>-optimal approximate and exact designs for experiments with discrete and continuous factors and a binary response. We show that the <i>d</i>-QPSO algorithm can efficiently find locally <i>D</i>-optimal designs even for experiments with a large number of factors and robust pseudo-Bayesian designs when nominal values for the model parameters are not available. Additionally, we investigate robustness properties of the <i>d</i>-QPSO algorithm-generated designs to various model assumptions and provide real applications to design a bio-plastics odor removal experiment, an electronic static experiment, and a 10-factor car refueling experiment. Supplementary materials for the article are available online.
DOI: 10.15468/dl.9cmn42
title: Occurrence Download

description: A dataset containing 214850 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Chelonia mydas (Linnaeus, 1758)",
 "Year 2000-2025"
 ]
}

 The dataset includes 214850 records from 334 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013271-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/b2w3t59sgg
title: Supplementary data for "New olivine morphologies in shergottites reveal complex thermal histories of martian magmas"

description: This dataset is the supplementary material for Eckley et al. "New olivine morphologies in shergottites reveal complex thermal histories of martian magmas". It contains Appendix A (PDF) with descriptions of samples and additional methods as well as 22 supplementary movies. Captions for movies are found in Appendix A.
DOI: 10.6084/m9.figshare.21547300.v1
title: Additional file 6 of Tissue dissociation for single-cell and single-nuclei RNA sequencing for low amounts of input material

description: Additional file 6: Table S6. List of marker genes for each cluster in snRNAseq analysis.
DOI: 10.6084/m9.figshare.29107565.v2
title: date.zip

description: This data is used for the divisional Seru scheduling problem
DOI: 10.6084/m9.figshare.c.3727411_d390.v1
title: Example fluorescent widefield image from a bioreactor lung cancer cell co-culture treated with docetaxel

description: Example confocal image stack from NCI-H1437 (RFP) 3D co-culture (Cancer Associated Fibroblasts) embedded in alginate capsules and grown in a stirred tank bioreactor. The culture is treated with docetaxel. The image is a RGB image with the RFP, GFP, and brightfield channel represented by a red, green, and gray color, respectively. The pixelsize is 2.22 micron. The image is in TIF-format.
DOI: 10.17632/3kthhpw2pd
title: CSS: cluster similarity spectrum integration of single-cell genomics data

description: It is a major challenge to integrate single-cell sequencing data across experiments, conditions, batches, timepoints and other technical considerations. New computational methods are required that can integrate samples while simultaneously preserving biological information. Here, we propose an unsupervised reference-free data representation, Cluster Similarity Spectrum (CSS), where each cell is represented by its similarities to clusters independently identified across samples. We show that CSS can be used to assess cellular heterogeneity and enable reconstruction of differentiation trajectories from cerebral organoid and other single-cell transcriptomic data, and to integrate data across experimental conditions and human individuals. The presented data set here includes 1) the published two-month-old human cerebral organoid scRNA-seq data (Kanton et al. 2019 Nature); 2) the published time course human cerebral organoid development scRNA-seq data (Kanton et al. 2019 Nature); 3) the single-cell RNA-seq data of cerebral organoid generated by inDrop; 4) the newly generated single-cell RNA-seq data of cerebral organoids with and without fixation conditions; 5) example script to generate results reported in the manuscript
DOI: 10.6084/m9.figshare.17153336.v1
title: Supplemental table 1 | LMS reference curve models

description: Supplemental LMS models for 17 biomarkers by gender and age. Corresponding models are outlined in article Figure 1 and Figure 2. Formula to implement the z-score calculation is included.
DOI: 10.17632/247h9zc32d
title: SDI(g)_and_GI_dataset

description: The SDI(g) dataset complements Hickel's (2020) Sustainable Development Index (SDI) by considering the Governance Index (GI) as a proxy of the countries' governance climate computed with the World Bank-Worldwide Governance Indicators (WGIs).
DOI: 10.6084/m9.figshare.22578022.v1
title: Integrated ligand-receptor interactions

description: This dataset consisted of integrated ligand-receptor interactions including ligands, receptors, functions and sources.
DOI: 10.6084/m9.figshare.26400445.v1
title: ROME Demo Colab Notebook

description: Demo for the ROME tool which automates the hardware design process via LLMs
DOI: 10.6084/m9.figshare.28540445.v1
title: DCF-DCS

description: The dataset including four files:1. ultimate_dcf_current_price.csv 2. ultimate_dcf_constant_price.xlsx 3. ultimate_dcs_constant_price.xlsx 4. ultimate_dcs_current_price.xlsx
DOI: 10.6084/m9.figshare.28907981.v1
title: GWTVDI Prediction-SSP1-2.6, SSP2-4.5, SSP5-8.5

description: These items provide a performance comparison of machine learning stacking models and individual CMIP6 and GWTVDI predictions across three main scenarios: SSP1-2.6, SSP2-4.5, and SSP5-8.5.
DOI: 10.17632/39t8bbw7jp
title: Wind tracking results for the visible (513 nm) images obtained by the Venus Monitoring Camera (VMC) onboard Venus Express

description: The dataset for publication "Winds from the visible (513 nm) images obtained by the Venus Monitoring Camera onboard Venus Express" by Khatuntsev et al. (2022). 
ASCII file VMC_VI2_CMV.dat, which contains wind tracking results for visible (513 nm) images obtained by the Venus monitoring camera onboard Venus Express during the period 2007/07/01-2013/01/29. Other files contain data for Figures from the publication. 
See readme.txt for detailed description of the format of each ASCII data file.
DOI: 10.17632/8bgx88mw88
title: পৌরাণিক দ্বৈতধর্মিতা ও সাহিত্যিক প্রতিফলন : লক্ষ্মী-সরস্বতীর সংঘাত ও সাংস্কৃতিক বাস্তবতা

description: সারসংক্ষেপ:
লক্ষ্মী ও সরস্বতীর পারস্পরিক সম্পর্ক বাঙালি সমাজে এক কিংবদন্তি হিসেবে প্রচলিত, যা পৌরাণিক আখ্যান এবং সাহিত্যিক কল্পনায় গভীরভাবে স্থান পেয়েছে। দেবীপ্রতিমার এই দ্বৈতধর্মিতা—একদিকে অর্থ ও ঐশ্বর্যের প্রতীক লক্ষ্মী, অপরদিকে বিদ্যা ও সৃষ্টির প্রতীক সরস্বতী—মানবজীবনের অন্তর্নিহিত সংকট এবং সামাজিক বাস্তবতাকে প্রতিফলিত করে। পৌরাণিক আখ্যান যেমন বেদের পুরুষসূক্ত, বিষ্ণুপুরাণ, এবং হরিবংশে এই দ্বৈতপ্রতিমার স্পষ্ট উল্লেখ পাওয়া যায়, তেমনি মধ্যযুগীয় বাংলা সাহিত্যের শ্রীকৃষ্ণবিজয় কাব্যেও লক্ষ্মী ও সরস্বতীর ঐশ্বরিক প্রভাবকে বন্দনা করা হয়েছে। সাহিত্যিক রচনাগুলিতে এই দ্বৈততার প্রতিফলন আর্থ-সামাজিক বৈপরীত্য ও জ্ঞান-সম্পদের সংঘাতের চিত্রায়ণ করেছে। পাশাপাশি, পশ্চিমা সাহিত্যের মিল্টনের ‘Paradise Lost’ কিংবা গ্রিক দর্শনের প্লেটো ও এরিস্টটলের তত্ত্বে এই অর্থ ও জ্ঞানের দ্বৈততার অনুরণন খুঁজে পাওয়া যায়। দেবীপ্রতিমার এই দ্বন্দ্বময় উপস্থিতি কেবল পৌরাণিক আখ্যানেই সীমাবদ্ধ নয়; এটি সমাজ, সংস্কৃতি ও সাহিত্যেও গভীরভাবে প্রভাব বিস্তার করেছে।
সূচক শব্দ: লক্ষ্মী-সরস্বতী, পৌরাণিক আখ্যান, সাহিত্যিক প্রতিফলন, দ্বৈতধর্মিতা, আর্থ-সামাজিক বৈপরীত্য, জ্ঞান ও সম্পদ, সংস্কৃতি ও সমাজ।
ভূমিকা:
পৌরাণিক আখ্যান এবং সাহিত্যিক কল্পনায় লক্ষ্মী ও সরস্বতীর পারস্পরিক সম্পর্ক একটি বিশেষ তাৎপর্য বহন করে। লক্ষ্মী আর্থিক সমৃদ্ধি ও ঐশ্বর্যের প্রতীক, আর সরস্বতী বিদ্যা ও সৃষ্টির অধিষ্ঠাত্রী দেবী হিসেবে পূজিত। এই দুই দেবীর সম্পর্ক এবং তাদের মধ্যে বিরাজমান প্রতিদ্বন্দ্বিতা বহুদিন ধরেই সাহিত্য এবং সমাজের আলোচনায় এসেছে। বেদের পুরুষসূক্ত থেকে শুরু করে মধ্যযুগীয় বাংলা সাহিত্যের শ্রীকৃষ্ণবিজয়, ললিতমাধব প্রভৃতিতে লক্ষ্মী ও সরস্বতীর দ্বৈতধর্মিতার পরিচয় পাওয়া যায়। সাহিত্যিক রূপান্তরের পাশাপাশি এই দ্বন্দ্ব সমাজের আর্থ-সামাজিক বৈপরীত্যকেও চিত্রিত করেছে। এর পাশাপাশি, পাশ্চাত্য দর্শনের প্লেটো এবং এরিস্টটলের তত্ত্বেও অর্থ ও জ্ঞানের প্রয়োজনীয়তার দ্বৈততার অনুরূপ চিত্র লক্ষণীয়। দেবীপ্রতিমার এই দ্বৈত উপস্থাপন কেবলমাত্র ধর্মীয় আখ্যানেই সীমাবদ্ধ নয়; বরং তা সমাজ, সংস্কৃতি এবং ব্যক্তিমানসেও গভীর প্রভাব বিস্তার করে।
DOI: 10.6084/m9.figshare.28685321.v1
title: Supplementary Material for: AL-amyloidosis as a rare cause of upper gastrointestinal bleeding: A case report and systematic literature review

description: Introduction
Amyloidosis is a rare disease characterized by the deposition of misfolded proteins in different organs leading to tissue damage and organ failure. The immunoglobulin light chain produced by a monoclonal B-cell is one of more than 30 proteins identified to cause amyloidosis. Most commonly affecting the heart and kidneys, AL (amyloid, light chain) -amyloidosis can occur in any organ except for the central nervous system and carries a high morbidity and mortality. Gastrointestinal involvement is observed rather rarely and can present with intestinal obstruction, weight loss, hematochezia, malabsorption or hematemesis. In this case report and systematic review, we present a 76-year-old male patient with new onset recurrent hematemesis and melena due to duodenal AL-amyloidosis and give a summary on the reported cases of upper gastrointestinal bleeding caused by the disease.

Case report
The report of this case was guided by the CARE guidelines and served as an example to allow for a discussion of the specific aspects of upper gastrointestinal bleeding in AL amyloidosis. A comprehensive literature search was conducted using the databases PubMed, EMBASE and GoogleScholar. After applying the eligibility criteria, a total count of 26 were included into the systematic review which was reported according to the PRISMA checklist.
The reported case showed recurrent hematemesis as the initial symptom of AL-amyloidosis due to B cell dyscrasia and appeared to be characteristic of patients presenting with primary gastrointestinal involvement. Summarizing the biometric and clinical details of the individuals included into the systematic review, we observed a mean age of 66 years, a slight female predominance and a preferred clinical manifestation in the stomach and duodenum with localized disease in 38% of all cases.

Conclusion
Although being a rare cause of upper gastrointestinal bleeding, AL-amyloidosis should be considered in patients with endoscopic findings of systemic disease and a clinical condition of suspected or known B cell dyscrasia. An early diagnosis is crucial for patients with AL amyloidosis as the disease often shows a rapid progression and treatment with combined immuno-chemotherapy is well tolerated and highly efficient.
DOI: 10.6084/m9.figshare.28911887.v1
title: INM317 Design Justice Zine - AI in Recruitment

description: This zine explores the use of AI in recruitment and its impact on fairness, inclusion, and transparency. It highlights how AI systems can reinforce existing biases, affecting marginalised groups such as racial minorities, women, non-native English speakers, disabled and older candidates. Drawing on real-world examples, legislation, and survey data from City University, the zine critiques current practices and proposes justice-led design alternatives that prioritise human oversight, diverse training data, and candidate rights.
DOI: 10.17632/725kx83gts
title: Molecular dynamics data for compound and Mycobacterium tuberculosis shikimic acid kinase targets

description: This repository contains data on the molecular dynamics (MD) of Mycobacterium tuberculosis shikimic acid kinase (MtSK) and (2-[(5Z)-5-(1-benzyl-5-bromo-2oxoindol-3-ylidene)-4-oxo-2-sulfanylidene-1,3-thiazolidin-3-yl]acetic acid). MtSK crystal structure was obtained from the Protein Data Bank (PDB ID: 2IYQ). The simulation system was created using Solution Builder on a CHARMM-GUI server with the compound conformation output from GOLD. The system was solvated using the TIP3P water model, and the necessary ions were added to balance the charges. The energies were minimized in up to 5,000 steps using the steepest descent method. Equilibration was performed for 100 ps under the standard NVT and NPT conditions. The temperature and pressure were adjusted to 310 K and 1 bar, respectively. The final MD simulation was performed for 100 ns with a 2 fs time step of under the NPT conditions. Gromacs 2021.4 was used for the simulations. Various analyses, ranging from energy calculations to Sasa analysis, were performed on the obtained trajectories.
DOI: 10.17632/j6g4vsmk4z
title: The effect of transcranial Direct Current Stimulation (tDCS) on cognitive functioning in individuals with attention deficit/hyperactivity disorder (ADHD)

description: Full data for "The effect of transcranial Direct Current Stimulation (tDCS) on cognitive functioning in individuals with attention deficit/hyperactivity disorder (ADHD)"
DOI: 10.17632/sksz3648np
title: Gene expression of immune and neuroendocrine-related genes and biometric data of small-spotted catshark embryos (Scyliorhinus canicula) after six days of exposure to deoxygenation and hypoxia.

description: The global oxygen inventory has been declining worldwide, primarily due to climate change. However, the effects of low oxygen levels on shark neuroendocrinology and immunology are not understood. This study investigated the neuroendocrine response and immune competence of the head and trunk tissues of early (EE; before pre-hatching) and late embryos (LE) of small-spotted catshark (Scyliorhinus canicula) under six days of deoxygenation (DO; 93% O2 of air saturation) and hypoxic conditions (26% O2). Catshark embryos were resilient to DO, showing only changes in gene expression for melanotransferrin and a 10% decline in survival. Under hypoxia, growth remained unaffected; however, survival decreased by 31% and exceptionally in LE, highlighting inadequate adaptive responses. The developmental stage affected the expression of immune response genes, pointing to critical response mechanisms. The EE stage showed a greater stress response under hypoxia compared to LE, with several changed immune genes, while hypoxia-inducible factor 1 alpha levels increased. The energy demands associated with coping with hypoxia compromised immune function, raising concerns about long-term species survival under climate change. These findings highlight the need for further research on sharks' resilience to environmental challenges and the interactions of metabolic pathways.
Here we show the gene expression (expressed as ΔΔCT) of immune and neuroendocrine-related genes in head and trunk samples of early (EE) and late embryos (LE), and biometric data of small-spotted catshark (Scyliorhinus canicula) after six days of exposure to deoxygenation (air saturation = 93%) and hypoxia (air saturation = 26%).
DOI: 10.17632/y4znm8mgz3
title: Raw dataset Predation of Asian weaver ant on Metisa plana bagworms

description: Field observations and monitoring of the foraging-predation of Oecophylla smaragdina major workers on pupae-larvae of the invasive bagworms species Metisa plana in oil palm plantations in Malaysia. The relationship between foraging-predation behaviors with air temperature AT and relative humidity RH was examined as well. 
A large plantation comparative biological control strategy trial with trunk systemic chemical injection to monitor the monthly, yearly yield productivity of Fresh Fruit Bunches FFB, the quality of fruit by the Oil Extraction Rate OER and the monthly, yearly incomes-profit: assessment of the effectiveness between both treatment methods. 
The Biological control strategy by weaver ants BC ant was significantly much higher, hence more effective than chemical trunk injection for all the variables of the study: Monthly-yearly yield; OER and Incomes. This is the first study ever conducted using the Asian weaver ants colonies towards the control of M. plana in a critically affected-infested large oil palm plantations in Asia.
DOI: 10.6084/m9.figshare.5286019.v8
title: SQLite database with MGI mouse gene annotations from Mouse Genome Informatics (MGI) at The Jackson Laboratory

description: A SQLite database with two tables: "description" and "genes". The description table includes the URL for the source file. The "genes" table contains the data, with 14 fields including chr (1-19, X, Y, MT), start and stop (in basepairs, GRCm38/mm10 build), source, strand, Name, and type.<br>This is like mouse_genes.sqlite, but just with the records with source=="MGI" and taking just one of each of the duplicate records for a gene.
DOI: 10.17632/4g5mj9khdn
title: Dataset of Thermomagnetic Curves, Hysteresis parameters and Sample Coordinates from Soil Studies in Eastern Botswana

description: This study hypothesizes that the magnetic properties of soils and rocks in eastern Botswana—specifically thermomagnetic and hysteresis parameters—can reveal mineralogy, geological history, and environmental conditions. Parameters like Curie temperature, magnetic susceptibility, and hysteresis traits help identify minerals such as magnetite, hematite, pyrrhotite, and titanomagnetite, and their grain sizes. These signatures enable mapping of geological units, boundaries, and mineral formation processes influenced by tectonics and past environments.

Samples were collected from soils (5–30 cm depth) along roads during the dry season, stored in plastic containers to prevent contamination. Rocks came from outcrops and quarries. Laboratory analysis involved heating samples up to 700 °C in nitrogen to identify Curie temperatures, and measuring hysteresis parameters (Mrs, Ms, Hcr, Hc) to assess mineral grain size and domain states.

Results show most samples contain magnetite-like minerals with Curie temperatures near 585 °C. Some exhibit secondary features like Hopkinson peaks, indicating mineral mixes such as hematite and pyrrhotite. Mineral alterations, like magnetite oxidation to hematite, are evident from susceptibility changes. Hysteresis data reveal a range of grain sizes and magnetic domain states, reflecting geological processes like weathering and neoformation. Non-reversible heating/cooling behavior suggests metastable minerals or alteration during thermal treatment.

Geologically, magnetic variations support mapping of features like the Kaapvaal and Zimbabwe Cratons and the Limpopo Belt. The data confirm regions dominated by magnetite minerals, useful for mineral exploration, paleoenvironmental reconstruction, and regional tectonic mapping. Overall, combining thermomagnetic and hysteresis measurements provides insights into mineralogy, alteration pathways, and geological structures essential for exploration and environmental assessments.
DOI: 10.17632/f62nfhk63p
title: Uniaxial compressive strength and electrical resistivity data for graphite-based nanomaterials reinforced cementitious composite

description: The provided datasets are used to establish machine learning models for uniaxial compressive strength (UCS) and electrical resistivity (ER) of graphite-based nanomaterials reinforced cementitious composite (GNRCC). The ER dataset consists of 416 samples and the UCS dataset consists of 373 samples. Samples in both datasets are compiled from published studies.
DOI: 10.17632/zyysdssxz2
title: Dataset of laboratory scale 3-axis filament winding machine integrated with the real-time winding angle measurement system and i-winder app

description: This data article presents three dataset’s results related to a laboratory scale 3-axis filament winding machine. The winding performance experimental tests are described in raw data related to winding angle pattern, range, accuracy programmed winding G-codes, and linear and rotation speeds. The real-time winding angle measurement device is developed to detect and measure the winding angle of filament wound carbon-fiber reinforced plastics (CFRP) tube, which uses dry and wet winding processes. The real-time measurement experimental tests are described as visual captured images. The i-winder app is designed to operate the winding machine with Bluetooth transmission protocols, which MIT App Inventor uses. The data presented in this article can have a benchmark for developing a multi-axis portable filament winding machine with an inexpensive and open-source control system or embedding the real-time winding angle measurement system.
DOI: 10.6084/m9.figshare.22691314.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.25598670.v1
title: reflectance_files

description: <pre>Hyperspectral images (HxWx?) containing the spectral reflectance of each image pixel. H and W correspond to the height and the weight of the matrix in pixel units, and ? corresponds to the wavelength from 400 nm to 720 nm.</pre><br>
DOI: 10.6084/m9.figshare.28377818.v5
title: Individual-level data

description: Trait-based approaches provide a useful framework for characterizing plant strategies and predicting plant performance. However, these approaches have mainly been based on species trait means, thus ignoring the important role of intraspecific trait variation. We measured a suite of leaf and absorptive root traits on individuals of <i>Fraxinus mandshurica</i> in a temperate forest to explore the patterns and drivers of intraspecific trait variation and to evaluate intraspecific trait-performance relationships. Principal component analyses revealed multiple ecological strategies of plants, via variation in leaf and root traits. We found multidimensional covariation in both leaf and absorptive root traits at the intraspecific level. We found no relationship between leaf and root trait dimensions. Root trait dimensions were mainly influenced by environmental conditions, whereas leaf trait dimensions were mainly influenced by tree size. Absorptive root traits are better predictors of tree performance than leaf traits. We also found that the trait-performance relationship varied with tree size.Overall, our study emphasizes the necessity for attention to intraspecific trait variation and correlation, and contributes to a comprehensive understanding of how plants respond to multiple abiotic and biotic drivers. Additionally, we highlight the need to combine above- and below-ground traits to improve predictions of plant performance, and hence predictions of forest dynamics and ecosystem functions.<br>