cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/mh5-ylb-a3w
title: Ostracoda Latreille, 1802

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2pd-yps-k0f
title: †Isastrea Milne Edwards & Haime, 1851

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.p6bxhs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Physalis peruviana",
 "Country is Nauru",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022312-250811113504898/datasets/export for details.
DOI: 10.3535/adh-ej7-0w1
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d82-e6z-64b
title: †Acanthambonia Cooper, 1956

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0zj-dh8-rfh
title: Pseudothurmannia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bcb-457-yl3
title: Squatina

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7je-jbh-kbv
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.nhwjgb
title: Occurrence Download

description: A dataset containing 364 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alepisaurus brevirostris Gibbs, 1960"
 ]
}

 The dataset includes 364 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004860-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.susj8t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Polypogon monspeliensis",
 "Geometry POLYGON((29.0 -26.5, 31.5 -26.5, 31.5 -24.5, 29.0 -24.5, 29.0 -26.5))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004870-250525065834625/datasets/export for details.
DOI: 10.15468/dl.grbc7e
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clarias gariepinus (Burchell, 1822)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((7.9237 1.4388,7.9186 1.8496,6.9096 1.8496,6.7752 1.3312,7.0614 0.9078,7.5027 0.9107,7.9237 1.4388))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004869-250525065834625/datasets/export for details.
DOI: 10.15468/dl.msy3fz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Portulacaria afra",
 "Geometry POLYGON((29.0 -26.5, 31.5 -26.5, 31.5 -24.5, 29.0 -24.5, 29.0 -26.5))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004871-250525065834625/datasets/export for details.
DOI: 10.15468/dl.prehme
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Ptaeroxylon obliquum",
 "Geometry POLYGON((29.0 -26.5, 31.5 -26.5, 31.5 -24.5, 29.0 -24.5, 29.0 -26.5))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004872-250525065834625/datasets/export for details.
DOI: 10.15468/dl.hxpntv
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chamaeleo calyptratus",
 "Country is Mexico",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081379-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gnq3hd
title: Occurrence Download

description: A dataset containing 864 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Antrostomus ekmani)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 864 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081378-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/ak8nvx
title: Political Regimes of the World Dataset, v.3.0.

description: This updated version of a global dataset covers the time period 1800-2024, with yearly observations for all countries that have been independent at any point in time since WWII. Within the category of democracies, we first make a distinction between republics and monarchies. Republics are then classified into presidential, semi-presidential, and parliamentary systems. Within the category of monarchies, most systems are parliamentary but a few countries are conferred to the category semi-monarchies. Autocratic countries are classified into the following main categories: absolute monarchy, military rule, party-based rule, personalist rule, and oligarchy. Within the categories party-based rule and oligarchy a number of subcategories are also identified.
DOI: 10.15468/dl.m5g2t3
title: Occurrence Download

description: A dataset containing 7329 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Agama agama (Linnaeus, 1758)"
 ]
}

 The dataset includes 7329 records from 133 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010111-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8uw8z9
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Richardia brasiliensis",
 "Country is Mexico",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082495-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ewe9e
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bauhinia purpurea",
 "Country is Fiji",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082496-250717081556266/datasets/export for details.
DOI: 10.18167/dvn1/y6qzbz
title: Improved NIRS Calibration for Hardness, Resilience, Cohesiveness, Springiness and Adhesiveness of Gari/Eba (cooked dough), at IITA, Ibadan, Nigeria.

description: The near-infrared reflectance spectra of Gari_Eba produced from 23 cassava genotypes were collected using the XDS-Rapid Content Analyzer. Gari_Eba dough was homogenized and filled into the equipment's ring cell sample holder. NIR spectra were collected in duplicate for each sample in the 400 to 2485 nm wavelength range. Before NIRS analysis, the instrumental texture profile of each sample was determined using the TA.XT texturometer and the same sample lots were used for the NIRS measurements. Reference data for hardness, cohesiveness, resilience, adhesiveness and springiness were obtained and combined with the NIRS spectra to develop prediction models for the textural attributes. Improved prediction models for the textural qualities of Eba were obtained by pooling the dataset from 2022 and 2023. The coefficient of determination and prediction ( R2cal and R2pred) for hardness, resilience, adhesiveness and cohesiveness were ( 0.83 and 0.65), (0.73 and 0.69), (0.71 and 0.23), (0.79 and 0.43) and (0.77 and 0.50) respectively.
DOI: 10.15468/dl.65pt73
title: Occurrence Download

description: A dataset containing 491 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Myotis leibii (Audubon & Bachman, 1842)",
 "Year 2005-2015"
 ]
}

 The dataset includes 491 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010441-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pm59gx
title: Occurrence Download

description: A dataset containing 253 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "GadmGid is MEX.25_1",
 "TaxonKey is Megascops trichopsis (Wagler, 1832)"
 ]
}

 The dataset includes 253 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010442-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15002621
title: MAGs recovered from native bee honeys

description: The MAGs were recovered from various samples of native stingless bees (Melipona beecheii and Scaptotrigona mexicana) subjected to different Zootechnic management.
DOI: 10.5281/zenodo.15265413
title: MAGs recovered from native bee honeys

description: The MAGs were recovered from various samples of native stingless bees (Melipona beecheii and Scaptotrigona mexicana) subjected to different Zootechnic management.
DOI: 10.15468/dl.8yj3tt
title: Occurrence Download

description: A dataset containing 2143 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hymenopappus artemisiifolius DC."
 ]
}

 The dataset includes 2143 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010443-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3rxddg
title: Occurrence Download

description: A dataset containing 2146992 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "PublishingCountry is Puerto Rico"
 ]
}

 The dataset includes 2146992 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010433-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9v8v8j
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Paleobiology Database",
 "TaxonKey is Purussaurus Rodrigues, 1892"
 ]
}

 The dataset includes 39 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010444-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jec34a
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyacinthella heldreichii (Boiss.) Chouard"
 ]
}

 The dataset includes 78 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010445-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.za24up
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fritillaria whittallii Baker"
 ]
}

 The dataset includes 30 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010446-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zr99t3
title: Occurrence Download

description: A dataset containing 310 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Origanum sipyleum L."
 ]
}

 The dataset includes 310 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010447-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rgzbgv
title: Occurrence Download

description: A dataset containing 366 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "GadmGid is MEX.25_1",
 "TaxonKey is Glaucidium palmarum Nelson, 1901"
 ]
}

 The dataset includes 366 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010448-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3cm7ht
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abies cilicica subsp. isaurica Coode & Cullen"
 ]
}

 The dataset includes 30 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010449-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5067/snwg/opera_l2_rtc-s1-static_calval_v1
title: OPERA Radiometric Terrain Corrected SAR Backscatter from Sentinel-1 Static Layers product for Calibration &amp; Validation (Version 1)
DOI: 10.5067/snwg/opera_l2_rtc-s1-static_v1
title: OPERA Radiometric Terrain Corrected SAR Backscatter from Sentinel-1 Static Layers validated product (Version 1)
DOI: 10.5066/p9pyg92b
title: Sea Otter Aerial Survey Data from Southeast Alaska, 2002-2003

description: The data package &quot;Sea Otter Aerial Survey Data from Southeast Alaska, 2002-2003&quot; provides raw data for examining abundance and distribution of northern sea otters (Enhydra lutris kenyoni) in Southeast Alaska, based on data collected during a series of population-wide aerial surveys. The USGS aerial sea otter surveys have been completed multiple times using consistent methodology involving aerial-based counts. The surveys provide data and a population estimate that federal and state management agencies use for decision making and planning additional research. This data package includes a series of files with the raw digital data that was used for population estimates and population modeling found in related manuscripts.
DOI: 10.15468/dl.ed77fy
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gypsophila arrostii subsp. nebulosa (Boiss. & Heldr.) Greuter & Burdet"
 ]
}

 The dataset includes 33 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010450-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15265404
title: Supplementary Simulation Data for "Computational and experimental assessment of key interdomain residues controlling the fold-switch of RfaH"

description: Additional simulation data for "Computational and experimental assessment of key interdomain residues controlling the fold-switch of RfaH"

Content:

'AA-SBM': Contains a total of 4 folders, which require the use of SMOG2 and the GROMACS v4.5.4 version with added Gaussian contact potentials available at the SMOG server (https://smog-server.org).



'pdb': Includes the SMOG2-ready PDB file of full-length RfaH generated using MODELLER, based on PDBs 2OUG and 5OND, and further minimized in explicit solvent using GROMACS v4.5.3 and the Amber ff99SB-ILDN force field.

'smog': Contains the SMOG2-generated files for MD simulations using All-Atom Structure-Based Models (SBMs).

'simulate': Includes simple scripts for running simulations at several temperatures on an HPC cluster

'analysis': Contains simple scripts for concatenation of energies and trajectories, extraction of the potential energy of the system and the number of native contacts (Q) for each simulation run, and a script for running the weighted histogram analysis method based on the java WHAM.jar available with SMOG2.


'ColabFold': Contains a total of 2 folders with results from protein structure predictions using ColabFold v1.5.5 (https://colabfold.com).



'structures': Contains 8 .tar.gz files with the predicted structures of several E. coli RfaH variants (WT, E48A, F126A, I129A, E136A, R138A, S139A, L142A, L143A, I146A, N147A, V154) under different conditions. Each folder within the .tar.gz file contains a total of 600 predicted structures for all variants (50 predicted structures per variant), as well as the results of analyzing these structures based on RMSD using k-means clustering and based on TM-score using hierarchical clustering.



r3_s10_nodrop: 5 model parameters, 3 recycles, 10 seeds, no dropouts

r3_s10_nodrop_MSA: 5 model parameters, 3 recycles, 10 seeds, no dropouts, using the same MSA as RfaH WT for all RfaH variants

r3_s10_drop: 5 model parameters, 3 recycles, 10 seeds, with dropouts

r3_s10_drop_MSA: 5 model parameters, 3 recycles, 10 seeds, with dropouts, using the same MSA as RfaH WT for all RfaH variants

r12_s10_nodrop: 5 model parameters, 12 recycles, 10 seeds, no dropouts

r12_s10_nodrop_MSA: 5 model parameters, 12 recycles, 10 seeds, no dropouts, using the same MSA as RfaH WT for all RfaH variants

r12_s10_drop: 5 model parameters, 12 recycles, 10 seeds, with dropouts

r12_s10_drop_MSA: 5 model parameters, 12 recycles, 10 seeds, with dropouts, using the same MSA as RfaH WT for all RfaH variants



'analysis': Contains 2 Jupyter Notebooks for usage in Google Colab to perform



k-means clustering analysis of the structures obtained by ColabFold based on the RMSD of residues 126-131

Hierarchical clustering analysis of the structures obtained by ColabFold based on the TM-score against the best predicted structure (rank 1) for each variant.
DOI: 10.5281/zenodo.15265405
title: Supplementary Simulation Data for "Computational and experimental assessment of key interdomain residues controlling the fold-switch of RfaH"

description: Additional simulation data for "Computational and experimental assessment of key interdomain residues controlling the fold-switch of RfaH"

Content:

'AA-SBM': Contains a total of 4 folders, which require the use of SMOG2 and the GROMACS v4.5.4 version with added Gaussian contact potentials available at the SMOG server (https://smog-server.org).



'pdb': Includes the SMOG2-ready PDB file of full-length RfaH generated using MODELLER, based on PDBs 2OUG and 5OND, and further minimized in explicit solvent using GROMACS v4.5.3 and the Amber ff99SB-ILDN force field.

'smog': Contains the SMOG2-generated files for MD simulations using All-Atom Structure-Based Models (SBMs).

'simulate': Includes simple scripts for running simulations at several temperatures on an HPC cluster

'analysis': Contains simple scripts for concatenation of energies and trajectories, extraction of the potential energy of the system and the number of native contacts (Q) for each simulation run, and a script for running the weighted histogram analysis method based on the java WHAM.jar available with SMOG2.


'ColabFold': Contains a total of 2 folders with results from protein structure predictions using ColabFold v1.5.5 (https://colabfold.com).



'structures': Contains 8 .tar.gz files with the predicted structures of several E. coli RfaH variants (WT, E48A, F126A, I129A, E136A, R138A, S139A, L142A, L143A, I146A, N147A, V154) under different conditions. Each folder within the .tar.gz file contains a total of 600 predicted structures for all variants (50 predicted structures per variant), as well as the results of analyzing these structures based on RMSD using k-means clustering and based on TM-score using hierarchical clustering.



r3_s10_nodrop: 5 model parameters, 3 recycles, 10 seeds, no dropouts

r3_s10_nodrop_MSA: 5 model parameters, 3 recycles, 10 seeds, no dropouts, using the same MSA as RfaH WT for all RfaH variants

r3_s10_drop: 5 model parameters, 3 recycles, 10 seeds, with dropouts

r3_s10_drop_MSA: 5 model parameters, 3 recycles, 10 seeds, with dropouts, using the same MSA as RfaH WT for all RfaH variants

r12_s10_nodrop: 5 model parameters, 12 recycles, 10 seeds, no dropouts

r12_s10_nodrop_MSA: 5 model parameters, 12 recycles, 10 seeds, no dropouts, using the same MSA as RfaH WT for all RfaH variants

r12_s10_drop: 5 model parameters, 12 recycles, 10 seeds, with dropouts

r12_s10_drop_MSA: 5 model parameters, 12 recycles, 10 seeds, with dropouts, using the same MSA as RfaH WT for all RfaH variants



'analysis': Contains 2 Jupyter Notebooks for usage in Google Colab to perform



k-means clustering analysis of the structures obtained by ColabFold based on the RMSD of residues 126-131

Hierarchical clustering analysis of the structures obtained by ColabFold based on the TM-score against the best predicted structure (rank 1) for each variant.
DOI: 10.34740/kaggle/dsv/11520345
title: Bitcoin pricing
DOI: 10.15468/dl.nz7x3g
title: Occurrence Download

description: A dataset containing 191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Leptonycteris nivalis (Saussure, 1860), Myotis leibii (Audubon & Bachman, 1842))",
 "Year 2015-2025"
 ]
}

 The dataset includes 191 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010451-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7kdgbz
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "GadmGid is MEX.25_1",
 "TaxonKey is Ciccaba virgata (Cassin, 1849)"
 ]
}

 The dataset includes 29 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010452-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p9knkog1
title: Sea Otter Aerial Survey Data from Western Prince William Sound, Alaska, 2017

description: This dataset consists of three tables related to abundance and distribution of northern sea otters (Enhydra lutris kenyoni) in western Prince William Sound, Alaska, based on data collected during a series of population-wide aerial surveys in June 2017. The dataset consists of: (1) sea otter counts along strip transects, (2) sea otter counts in Intensive Search Unit (ISU) within the transects, and (3) Transect coordinates.