cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13020/6qe9-kv23
title: Data for Entropically-driven macrolide polymerizations for the synthesis of aliphatic polyester copolymers using titanium isopropoxide

description: Thermal and mechanical properties of sustainable aliphatic polyesters can be tuned through the synthesis of copolymers. The synthesis of two 14-membered macrolides are reported: a cyclic tetraester with alternating lactic acid (LA) and 3-hydroxypropionic acid (3HP) units and a cyclic diester with alternating glycolic acid (GA) and 2-methyl-1,3-propanediol (2MD) units. Ring-opening transesterification polymerization (ROTEP) of these macrolides to yield poly(LA-stat-3HP) and poly(GA-alt-2MD), respectively, were found to be modestly endothermic (ΔHp° = 2.0 kJ mol-1 and 0.5 kJ mol-1, respectively) and endoentropic (ΔSp° = 27 J mol-1 K-1 and 23 J mol-1 K-1, respectively). Inexpensive and non-toxic titanium isopropoxide Ti(Oi-Pr)4 functions as an active catalyst for these entropically-driven ROTEPs, achieving high conversions (> 90%) in under 1 h. The polymerizations exhibit control over molar mass with dispersity values < 1.7. P(GA-alt-2MD) is an amorphous polymer with a low glass transition temperature near −30 °C. P(LA-co-3HP) exhibits a glass transition temperature up to 13 °C and depending on the regioregularity, exhibits a melting temperature up to 96 °C.
description: See readme.txt
DOI: 10.13020/9bem-wj63
title: Data for: Species recognition is constrained by chorus noise, but not inconsistency in signal production, in Cope's gray treefrog (Hyla chrysoscelis)

description: Optimal mate choice based on the assessment of communication signals can be constrained by multiple sources of noise. This dataset was created to examine the effects of two possible noise sources: ambient noise caused by the treefrog chorus and the inconsistency in signal production inherent to many animal communication systems. Our data were generated using two-choice phonotaxis tests of female Cope's gray treefrogs.
description: This spreadsheet contains the complete dataset (in long format) from phonotaxis tests in which the authors experimentally manipulated the following independent variables: the level of within-individual variation in pulse rate in male Cope’s gray treefrog calls, the level of ambient noise during the phonotaxis test, and the mean pulse rate of the alternative stimulus. In phonotaxis tests, subjects (female treefrogs) discriminated between two stimuli. In each test, we recorded the following measures of female responses: the binary choice made by the subject and the associated response latency. Individual treefrogs were tested in more than one test; the unique alphanumeric code in the “ID” column specifies which treefrog contributed the test represented by a single row of the dataset. See the readme text for additional details.
DOI: 10.13020/hhw2-mr60
title: Estimating annual harvest of American Woodcock (Scolopax minor) in the United States during 1964-2016: data, model code, and supplemental estimates

description: Harvest of American woodcock (Scolopax minor) in the United States has been estimated using two different hunter surveys: 1) the Duck Stamp Survey (DSS, 1964-2001), which estimated harvest by hunters who also hunted ducks or geese and purchased a Federal Migratory Bird Hunting (“Duck”) Stamp, but failed to survey hunters who did not purchase Duck Stamps (which were not required for hunting woodcock); and 2) the Harvest Information Program (HIP, 1999-2019), which was initiated in 1999 and designed to survey nearly all hunters who targeted woodcock. The two surveys overlapped during only 3 years (1999-2001), and in most states, the HIP survey estimated much higher woodcock harvest based on its more complete sampling frame of woodcock hunters. We developed Bayesian hierarchical models to use combined data streams to estimate total harvest during 1964-2016 (Arnold 2019) or 1964-2013 (Saunders et al. 2019) in the Eastern and Central Management Units by estimating unobserved harvest by hunters who never or only occasionally hunted waterfowl. Both approaches used annual Duck Stamp sales as a covariate to assess annual participation by hunters who occasionally hunted waterfowl, and also used the 3 overlap years (1999-2001) to estimate harvest by hunters who never hunted waterfowl. However, our approaches differed in how we assessed participation by occasional waterfowl hunters: 1) as residuals from splines fit to long-term duck stamp sales (Arnold 2019), which posited a smooth change in total waterfowl hunters through time, with residuals reflecting short-term participation or non-participation in waterfowl hunting, or 2) relative to maximum annual duck stamp sales (Saunders et al. 2019), which posited a constant number of potential waterfowl hunters in each state (max stamp sales), but with annual changes in relative participation in waterfowl hunting corresponding to yearly stamp sales. Our estimates were remarkably similar for combined harvest in the Central Management Unit, but diverged substantially for the Eastern Management Unit. We have no way of assessing which set of assumptions is closer to the truth, and present both models here in hopes that future researchers will continue to refine our methods to produce even more robust estimates of historical woodcock harvest.
description: These files provide model code and data used to estimate national, regional, and state-specific harvest of American woodcock by U.S. hunters during 1964-2016. Details can be found in the readme file, R code files, and associated publications.
DOI: 10.13020/wxmc-x946
title: Free carrier induced ferroelectricity in layered perovskites

description: Doping ferroelectrics with carriers is often detrimental to polarization. This makes the design and discovery of metals that undergo a ferroelectric-like transition challenging. In this letter, we show from first principles that the oxygen octahedral rotations in perovskites are often enhanced by electron doping, and this can be used as a means to strengthen the structural polarization in certain hybrid-improper ferroelectrics -- compounds in which the polarization is not stabilized by the long range Coulomb interactions but is instead induced by a trilinear coupling to octahedral rotations. We use this design strategy to predict a cation ordered Ruddlesden-Popper compound that can be driven into a metallic ferroelectric-like phase via electrolyte gating.
description: The first-principles simulation result of the paper "Free carrier induced ferroelectricity in layered perovskites", including:

1. Input and output for Vienna Ab initio Simulation Package.
2. Code for data analysis using Jupyter notebooks.
DOI: 10.13020/5rj1-zz56
title: Supporting data for spectral rigidity of non-Hermitian symmetric random matrices near the Anderson transition

description: We numerically calculate the number variance in the three dimensional TME model and study the evolution of the number variance as a function of average number of eigenvalues with different disorder parameters as the system goes from a metal to an insulator. We use statistics of complex eigenvalues obtained by diagonalization of the TME model on many realizations of cubic lattices with side length L = 8,12,16. The diagonalization is done using LAPACK algorithm. The TME model may be used to describe a random laser.
description: The set of data required to produce the plot of number variance of eigenvalues inside disks in the complex plane.
DOI: 10.13020/d6601n
title: Mountain Pine Beetle Colonization of Novel Hosts

description: Mountain pine beetle (Dendroctonus ponderosae) threatens eastern pine species due to an ongoing eastward expansion of its range through the Canadian boreal forest. This data was collected to assess the acceptance and attraction behaviors of mountain pine beetle in relation to two historical western North American and four novel eastern North American hosts.
description: Data includes size of logs used for tests, beetles boring into the bark, beetles accepting the phloem, beetles constructing egg galleries, beetles attraction to infested logs, and specific chemical composition of the six different pine species.
DOI: 10.13020/0ch0-vb18
title: UAV-based hyperspectral dataset for high-throughput yield phenotyping in wheat

description: The dataset was collected by a hyperspectral camera (PIKA II, Resonon, Inc.) mounted on an unmanned aerial vehicle (UAV, DJI Matrice 600 Pro) from three experimental yield trial fields (C3, C4, and C9) during two consecutive growing seasons 2017 (C3 and C9) and 2018 (C4). The aerial hyperspectral images were captured within two weeks prior to harvest over 240 spectral channels in visible and near infrared region (400 nm to 900 nm) with about 2.1 nm spectral resolution and about 2 cm spatial resolution. Subsequent to radiometric calibration and noisy band removal, plots were cropped from the hyperspectral images and saved as 3D matrices with Matlab (MAT files) and Python (NPY files) format. The dataset entails hyperspectral cubes of 1021 wheat plots and the grain yield of plots harvested by a combine. The corresponding ground truth data (yield) for each hyperspectral cube representing a plot can be found based on the field (e.g., C3, C4, and C9) and plot ID.
DOI: 10.13020/9m8p-pv93
title: 1D SAXS indexing macro for Igor Pro

description: This code was developed for the facile analysis of 1D SAXS data collected from ordered materials in Igor Pro. A robust file loading algorithm is included, allowing for rapid generation of publication quality stack plots. Also included is a straightforward indexing macro, enabling indexing of 1D SAXS data to a variety of phases. New phases can be added with minimal effort and multiple indexing options are included (e.g., ticks, lines, color, etc.), minimizing time spent analyzing data and producing plots for presentations or publications.
description: Installation instructions, how to use the program and troubleshooting are found in the Readme. See link to simulate 2D diffraction data: https://hdl.handle.net/11299/223279
DOI: 10.13020/w0z3-z709
title: Level of curation self-reported by 100 CoreTrustSeal certified repositories (2017-2019)

description: This dataset extracts and makes machine-actionable the responses to the "Level of curation performed" component of the CoreTrustSeal application v01 (2017-2019).  The author reviewed 100 applications in pdf file format and compiled the responses into one spreadsheet for further analysis. Additionally, the CTS application instructions for v01 were parsed in order to analyze the completed applications and included here in a spreadsheet.
DOI: 10.13020/rwp5-6413
title: R Code and Data Supporting: Ecological forecasts reveal limitations of common model selection methods: predicting changes in beaver colony densities

description: This repository contains the R and JAGS code supporting results reported in: Johnson-Bice, S.M., J.M. Ferguson, J.D. Erb, T.D. Gable, S.K. Windels (2020). Ecological forecasts reveal limitations of common model selection methods: predicting changes in beaver colony densities. Ecological Applications [In Press].
description: Detailed documentation in readme text file.
DOI: 10.13020/d6t590
title: R Code and Output Supporting: Species Distribution Models: Predictive Snipers or Shots in the Dark?

description: Species distribution models (SDMs) are one of a variety of statistical methods that link individuals, populations, and species to the habitats they occupy. In Fieberg et al. "Species distribution models: Predictive snipers or shots in the dark?", we introduce a new method for model calibration, which we call Used-Habitat Calibration plots (UHC plots) that can be applied across the entire spectrum of SDMs. Here, we share the Program R code and data necessary to replicate all three of the examples from the manuscript that together demonstrate how UHC plots can help with three fundamental challenges of habitat modeling: identifying missing covariates, non-linearity, and multicollinearity.
description: Each example.html file (“example_”) uses various uhcplot functions (html files with description “code for function”). The example with the MN moose data (example_3_moose.html) also uses data for one Minnesota moose from 2013 and 2014 (in moose12687.csv). The tables (tables.html) are created with regression output files created and saved with the codes provided in the example.html files. The zipped folder (uhcplots.zip) contains all of the Program R files (.R extension) for each of the html files. MNmoose_Arrowhead.pdf details the location of the moose from dataset. See the readme.txt for more information.
DOI: 10.13020/bkja-jq93
title: Ensembles from dynamic refinement of non-phosphorylated and phosphorylated phospholamban-SERCA complexes

description: Analysis, setup and ensembles of the dynamic refinement of phospholamban-SERCA complexes in the calcium-free E2 state. Includes trajectory files, analytic scripts, restraint files, setup files, simulation code, raw data (including OS-ssNMR data) and processed data used for the associated citations as per transparent reporting requirements.
description: Full GROMACS ensembles of SERCA-PLN and SERCA-pS16PLN complexes (40 ps time-step, 10200 frames, 400 ns)
- SERCA_PLN_E2_apo_Ensemble (6.6 GB). Topology file: SERCA_PLN_E2_apo_frame0.gro (7.8 MB)
- SERCA_PLN_E2_pS16_Ensemble.xtc (6.6 GB). Topology file: SERCA_PLN_E2_pS16_frame0.gro (7.8 MB)

Stripped GROMACS ensembles of SERCA-PLN and SERCA-pS16PLN complexes (40 ps time-step, 10200 frames, 400 ns) - no water or lipids
- nonP_PLN_SERCA_E2_8rep_dt40.xtc (633.8 MB). Topology file: nonP_PLN_SERCA_E2.gro (735.9 kB)
- pS16_PLN_SERCA_E2_8rep_dt40.xtc (634.1 MB). Topology file: pS16_PLN_SERCA_E2.gro (736.0 kB)

Configuration and restraint files use to generate ensembles

Analytical scripts and processed data for:
- Principal component analysis
- Distance measurements
- Contact analysis
- Helix allostery

Raw experimental data:
- All SE-SAMPI4 spectra of PLN and pPLN alone and in complex with SERCA
- Raw FID files
- Processing script (NMRPipe)
- Assignments
DOI: 10.13020/jcgj-5077
title: Historical tree planting data from Himachal Pradesh

description: This dataset records information about tree planting activities in the Indian state of Himachal Pradesh from 1979-2015. Data were obtained from "Annual Plantation Brochures" Published by the Himachal Pradesh Forest Department. The brochure for 1983 could not be located, thus the year 1983 is missing. Contains detailed information about species and government programs that are responsible for planting each tree. Two data files are included, a statewide dataset and a dataset focusing only on Kangra Circle
DOI: 10.13020/d67700
title: Judging Similarity: A User-Centric Study of Related Item Recommendations - Dataset

description: This dataset describes survey results about the similarity of pairs of movies from the MovieLens recommender system. These data are described in the research paper "Judging Similarity: A User-Centric Study of Related Item Recommendations", published in the ACM Conference on Recommender Systems (RecSys), 2018. The data were collected between March 21 and April 16, 2018.
DOI: 10.13020/357e-ek33
title: Data Underlying "Is the open access citation advantage real? A systematic review of the citation of open access and subscription-based articles"

description: This data underlies a systematic review project: "Is the Open Access Citation Advantage Real?" This project considers whether materials that are published open access receive a greater number of citations than materials published in subscription-based resources. The data here are extracted from 134 relevant studies. The data also include a risk of bias assessment that considers the methodological quality and flaws of the included studies.
description: This dataset includes a single csv file of the supplementary data underlying the systematic review project. It is accompanied by detailed documentation.
DOI: 10.13020/d60114
title: Vaccination Against Lawsonia intracellularis Decreases Shedding of Salmonella enterica serovar Typhimurium in Co-Infected Pigs and Alters the Gut Microbiome

description: Salmonella enterica is a leading cause of foodborne illness worldwide and pork can serve a source of infection. In this study, we investigated if vaccinating pigs against Lawsonia intracellularis, a common pathogen of swine that has previously been shown to favor Salmonella enterica infection, confers protection against Salmonella enterica serovar Typhimurium. We investigated the underlying changes in the gut microbiome mediated by single S. Typhiumurium infection compared to co-infection with L. intracellularis as well as the effect of vaccination on the microbiome. In this study, a total of five treatment groups were used: 1) challenged with S. Typhimurium alone (Sal), 2) challenged with both S. Typhimurium and L. intracellularis (Sal Law), 3) challenged with S. Typhimurium and vaccinated against L. intracellularis (Sal Vac), 4) challenged with both S. Typhimurium and L. intracellularis and vaccinated against L. intracellularis (Sal Law Vac), and 5) non-infected control (Control).
description: Deposited here are fastq files of sequencing of the V1-V3 region of the 16S rRNA gene from feces of each animal of the study from the time point of prior to infection (0 days post infection) to 49 days post infection. Descriptions of each sample are in the mapping file named “MappingFileSubmission.txt”. The sequences are in the file “FastqCoinfectionMicrobiome.tar.gz”.
DOI: 10.13020/w16t-na37
title:  Data for Impacts of beaver dams on low-flow hydrology and hydraulics, Knife River, Minnesota 

description: These data were collected as part of a two-year investigation into the impacts of beaver dam removal on low-flow hydrology and hydraulics in the Knife River, Minnesota, USA.  Eight sub-basins were monitored for two years, organized as four pairs of sub-basins.  The study focused on small headwater sub-basins, with areas ranging from 1.58 to 6.4 km2.  In 2018, all of the study basins had active beaver dams.  In 2019, the beavers were removed and dams notched in half of the sub-basins, one half of each of the four pairs.  Data collection continued throughout the 2019 season measuring impacts post-dam removal.
description: All sites reside within the Knife River watershed in northern Minnesota.  Sensors to record pressure and temperature were installed within beaver impoundments, downstream of beaver impoundments in the stream and in shallow groundwater wells within the floodplain, and in the air.  Additional in-stream measurements of velocity and depth were collected along cross-sections in order to measure discharge and develop rating curves at each sampling site.  Lastly, water samples were collected at all sites to measure stable isotopes of oxygen and hydrogen.  The ReadMe file contains all metadata information describing the data files.  Details of sample collection and analysis can be found in Behar (2020) and Burgeson (2021).  
 
A more focused study occurred at two sites (2B and 4B) in July-August 2019.  Additional temperature sensors were installed downstream of beaver impoundments in the streambed.  A weather station was installed at site 2B to record air temperature, relative humidity, solar radiation, and wind speed. A rhodamine tracer test was run at each site with dye released into the subsurface in the beaver impoundment with samples collected downstream.  One tracer test was run at site 2B on 7/27-7/28/19, and one tracer test was run at site 4B on 7/23-7/24/19.  For further information, please consult Behar (2020).
DOI: 10.13020/rdtc-1439
title: Data for "The disordered micelle regime in a conformationally asymmetric diblock copolymer melt" 

description: Data appearing in the publication "The disordered micelle regime in a conformationally asymmetric diblock copolymer melt". This paper reports Monte Carlo Field Theoretic Simulation (MC-FTS) results for diblock copolymers in the sphere-forming region of the phase diagram. The archived data are the post-processed trajectories. Owing to their size, the raw trajectories for the fields are not stored.
description: The mcfts directory contains all the post-processed data for the MCFTS work. The raw trajectories are not kept.

The directory structure is as follows:
eps[\epsilon]_[type of simulation]/chi[#chivalue]
The homogeneous initial condition have no suffixes and are simply called e.g. eps1
Type of suffixes:
boot - calculations where the fourier type moves are bootstrapped from a structure factor obtained using less efficient moves
nocomp - a postprocessed trajectory without averaging the wavevectors.
order - calculations started from the ordered BCC initial condition
small - calculations started from a different unit size

There are also isovalue_XXX folders where they contain post-proccessed real space data for the micelles using isovalue corresponding to XXX
DOI: 10.13020/d67c71
title: Network and Land Use Data for "Indiana Interurban Networks"

description: This dataset contains the network and land use data for our Indiana Interurban study published as Chapter five "Indiana Interurban Networks" in the book titled "Evolving Transportation Networks" (published by Springer in 2011). The first tab contains a list of stations included in our model and their x/y coordinates. The second has a list of links with their start and end nodes (Station IDs), their open/close years, and Operator ID. The third documents a list of Operators and their IDs. The fourth has a list of counties in Indiana, the x/y coordinates of their centroids, and historical population data from 1897 to 1941. Historical data are only available by decade at the county level, and we calculated years in between by interpolation. the last tab has a list of tracts, the x/y of their centroids, and historical population data from 1897 to 1941 (tract population is approximated assuming population in a county is evenly distributed within county boundary).
DOI: 10.13020/d6296d
title: Data for "Reducing High Flows and Sediment Loading through Increased Water Storage in an Agricultural Watershed of the Upper Midwest, USA"

description: Climate change, land clearing, and artificial drainage have increased the Minnesota River Basin’s (MRB) stream flows, enhancing erosion of channel banks and bluffs. Accelerated erosion has increased sediment loads and sedimentation rates downstream. High flows could be reduced through increased water storage (e.g., wetlands or detention basins), but quantifying the effectiveness of such a strategy remains a challenge. We used the Soil and Water Assessment Tool (SWAT) to simulate changes in river discharge from various water retention site (WRS) implementation scenarios in the Le Sueur watershed, a tributary basin to the MRB. We also show how high flow attenuation can address turbidity issues by quantifying the impact on near-channel sediment loading in the watershed’s incised reaches. WRS placement in the watershed, hydraulic conductivity (K), and design depth were varied across 135 simulations. The dominant control on site performance is K, with greater flow reductions allowed by higher seepage rates and less frequent overflowing. Deeper design depths enhance flow reductions from sites with low K values. Differences between WRS placement scenarios are slight, suggesting that site placement is not a first-order control on overall performance in this watershed. Flow reductions exhibit power-law scaling with exceedance probability, enabling us to create generalized relationships between WRS extent and flow reductions that accurately reproduce our SWAT results and allow for more rapid evaluation of future scenarios. Overall, we show that increasing water storage within the Le Sueur watershed can be an effective management option for high flow and sediment load reduction.
description: The data uploaded here include: (1) ArcGIS shapefiles of the delineated water retention sites, the finely resolved subbasins used for the SWAT model, and the coarsely resolved subbasins used for contributing area measurements; (2) contributing area data; and (3) SWAT output for all scenarios, including the baseline scenario.