cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/2hshp-1hv63
title: WT LP01 from Liu lab, Yale

description: Type four secretion system, T4SS
description: <strong>Tilt Series Date:</strong> 2016-11-28</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-51.0°, 51.0°), step: 3°, constant angular increment, dosage: 50.0 eV/Å²,  defocus: -5.0 μm,  magnification: 15500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
<strong>Collaborators and Roles:</strong> Data collected by Bo Hu in Jun Liu lab at Yale from their Polara. Partial WT strain data set. Primary literature:  doi: 10.1038/s41564-018-0165-z</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-198/rawdata/</p>T4SSWTDec12A043_driftcorr.mrc,  Tilt Series (Pixel Size 0.25 nm), 2.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        T4SSWTDec12A043_driftcorr.rec,  Reconstruction (Pixel Size 1.0 nm), 2.3 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.v3vwv8
title: Occurrence Download

description: A dataset containing 78092 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-93.74848 17.13169,-93.81532 17.03851,-93.86509 17.05691,-93.91106 17.00707,-93.87631 16.90415,-93.79218 16.9267,-93.71818 16.94039,-93.59675 16.82872,-93.62165 16.77234,-93.57461 16.7467,-93.32541 16.95255,-93.40916 17.00693,-93.48436 16.98466,-93.74848 17.13169))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 78092 records from 219 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003045-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h84u7h
title: Occurrence Download

description: A dataset containing 2150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Pseudocalanus acuspes (Giesbrecht, 1881)",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 2150 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003058-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7yaksj
title: Occurrence Download

description: A dataset containing 871 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canis rufus Audubon & Bachman, 1851"
 ]
}

 The dataset includes 871 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003056-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nxyan4
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cryptomyces",
 "HasCoordinate is true"
 ]
}

 The dataset includes 119 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042782-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30127192
title: A new neosuchian crocodyliform from the Lower Cretaceous (Aptian–Albian) Holly Creek Formation of southwest Arkansas and its implications on the relationships of Goniopholididae

description: A new species of neosuchian crocodyliform, <i>Paarthurnax holliensis</i> gen. et sp. nov., is herein described based on a nearly complete skull from the Lower Cretaceous (Aptian–Albian) Holly Creek Formation of southwest Arkansas. This locality contains a wide array of semiaquatic, aquatic, and terrestrial vertebrate body and trace fossils. This new taxon is notable for having a ventrally offset premaxillary tooth row, maxillary groove, transverse interorbital crest, elongate anterolateral process of the postorbital, transversely flattened postorbital bar, large sub-rectangular transverse ellipsoid supratemporal fenestrae, and a laterally opened cranioquadrate passage. Its overall morphology is similar to that of the putative goniopholidid <i>Denazinosuchus kirtlandicus</i> from the Campanian Kirtland Formation of New Mexico, though unlike <i>D. kirtlandicus</i> the new form bears a palatal premaxilla-maxilla suture posteromedially directed on its lateral half and anteromedially directed along its medial region, a more tapered anterior projection of the frontal, and transverse sub-rectangular supratemporal fenestrae. It shares features typically associated with goniopholidids, such as a transverse interorbital crest and a perinarial crest. However, it also shares anterior and posterior rami of jugal comparable in depth, a rod-shaped jugal, and a frontal separated medially from the orbital margin with paluxysuchids. Phylogenetic analyses recover <i>Paarthurnax holliensis</i> as sister to <i>D. kirtlandicus</i>, both falling out as derived goniopholidids. Intriguingly, paluxysuchids are recovered in a derived position within Goniopholididae. This tree topology challenges long-held assumptions about the status and distribution of Goniopholididae, which may have a more expansive distribution in the Cretaceous of North America than previously believed.
DOI: 10.6084/m9.figshare.30127192.v1
title: A new neosuchian crocodyliform from the Lower Cretaceous (Aptian–Albian) Holly Creek Formation of southwest Arkansas and its implications on the relationships of Goniopholididae

description: A new species of neosuchian crocodyliform, <i>Paarthurnax holliensis</i> gen. et sp. nov., is herein described based on a nearly complete skull from the Lower Cretaceous (Aptian–Albian) Holly Creek Formation of southwest Arkansas. This locality contains a wide array of semiaquatic, aquatic, and terrestrial vertebrate body and trace fossils. This new taxon is notable for having a ventrally offset premaxillary tooth row, maxillary groove, transverse interorbital crest, elongate anterolateral process of the postorbital, transversely flattened postorbital bar, large sub-rectangular transverse ellipsoid supratemporal fenestrae, and a laterally opened cranioquadrate passage. Its overall morphology is similar to that of the putative goniopholidid <i>Denazinosuchus kirtlandicus</i> from the Campanian Kirtland Formation of New Mexico, though unlike <i>D. kirtlandicus</i> the new form bears a palatal premaxilla-maxilla suture posteromedially directed on its lateral half and anteromedially directed along its medial region, a more tapered anterior projection of the frontal, and transverse sub-rectangular supratemporal fenestrae. It shares features typically associated with goniopholidids, such as a transverse interorbital crest and a perinarial crest. However, it also shares anterior and posterior rami of jugal comparable in depth, a rod-shaped jugal, and a frontal separated medially from the orbital margin with paluxysuchids. Phylogenetic analyses recover <i>Paarthurnax holliensis</i> as sister to <i>D. kirtlandicus</i>, both falling out as derived goniopholidids. Intriguingly, paluxysuchids are recovered in a derived position within Goniopholididae. This tree topology challenges long-held assumptions about the status and distribution of Goniopholididae, which may have a more expansive distribution in the Cretaceous of North America than previously believed.
DOI: 10.6084/m9.figshare.30185179
title: A new, diminutive, heterodont neosuchian from the Vaughn Member of the Blackleaf Formation (Cenomanian), southwest Montana, and implications for the paleoecology of heterodont neosuchians

description: Although crocodyliforms from the Campanian–Maastrichtian of North America have received considerable attention, taxa occurring earlier in the Cretaceous have only recently begun to be more thoroughly studied. Of particular interest amongst these recent discoveries is the heterodont neosuchian <i>Wannchampsus kirpachi</i> Adams 2014 and the similar, undescribed ‘Glen Rose Form’ (USNM 22039). Both hold an unclear phylogenetic position, either forming a clade sister to Atoposauridae, a group of small, heterodont neosuchians from the Jurassic and Cretaceous of Laurasia, or to Paralligatoridae, a clade of larger, platyrostral, homodont neosuchians from the Cretaceous of Asia and North America. Here we describe a new species of diminutive, heterodont neosuchian, <i>Thikarisuchus xenodentes</i> gen. et sp. nov., from the early–middle Cenomanian Vaughn Member of the Blackleaf Formation of southwest Montana. The specimen includes cranial, mandibular, axial, and appendicular elements in articulation and dense concentration. It is recovered in a sister relationship with <i>Wannchampsus</i> and USNM 22039. We propose the name Wannchampsidae (clade nov.) for this group of small, heterodont neosuchians endemic to the Cretaceous of North America. Wannchampsidae is more confidently recovered sister to Atoposauridae due to the recognition of new synapomorphies. The new taxon provides greater clarity on the potential diet and paleoecology of Wannchampsidae and Atoposauridae and displays similar craniomandibular and dental characteristics to the notosuchian group Uruguaysuchidae, strongly suggesting these neosuchian groups were also omnivorous or insectivorous and terrestrially adapted, respectively representing a unique diet and reversion to terrestriality within Neosuchia.
DOI: 10.6084/m9.figshare.30185179.v1
title: A new, diminutive, heterodont neosuchian from the Vaughn Member of the Blackleaf Formation (Cenomanian), southwest Montana, and implications for the paleoecology of heterodont neosuchians

description: Although crocodyliforms from the Campanian–Maastrichtian of North America have received considerable attention, taxa occurring earlier in the Cretaceous have only recently begun to be more thoroughly studied. Of particular interest amongst these recent discoveries is the heterodont neosuchian <i>Wannchampsus kirpachi</i> Adams 2014 and the similar, undescribed ‘Glen Rose Form’ (USNM 22039). Both hold an unclear phylogenetic position, either forming a clade sister to Atoposauridae, a group of small, heterodont neosuchians from the Jurassic and Cretaceous of Laurasia, or to Paralligatoridae, a clade of larger, platyrostral, homodont neosuchians from the Cretaceous of Asia and North America. Here we describe a new species of diminutive, heterodont neosuchian, <i>Thikarisuchus xenodentes</i> gen. et sp. nov., from the early–middle Cenomanian Vaughn Member of the Blackleaf Formation of southwest Montana. The specimen includes cranial, mandibular, axial, and appendicular elements in articulation and dense concentration. It is recovered in a sister relationship with <i>Wannchampsus</i> and USNM 22039. We propose the name Wannchampsidae (clade nov.) for this group of small, heterodont neosuchians endemic to the Cretaceous of North America. Wannchampsidae is more confidently recovered sister to Atoposauridae due to the recognition of new synapomorphies. The new taxon provides greater clarity on the potential diet and paleoecology of Wannchampsidae and Atoposauridae and displays similar craniomandibular and dental characteristics to the notosuchian group Uruguaysuchidae, strongly suggesting these neosuchian groups were also omnivorous or insectivorous and terrestrially adapted, respectively representing a unique diet and reversion to terrestriality within Neosuchia.
DOI: 10.6084/m9.figshare.29986505
title: Jurassic teleost diversity and abundance changes, recorded by otolith and cephalopod statolith assemblages

description: We describe otolith and cephalopod statolith assemblages from the Jurassic of Lithuania, Poland, and the U.K. We report two new teleost fish genera (<i>Juraelops</i> gen. nov. and <i>Vodyanoi</i> gen. nov.), and eight new fish species (<i>Pteralbula jurassica</i> sp. nov., <i>Protalbula dorsetensis</i> sp. nov., <i>Palealbula ventai</i> sp. nov., <i>Palealbula crenulata</i> sp. nov., <i>Juraelops prodigiosum</i> sp. nov., <i>Vodyanoi schwarzhansi</i> sp. nov., <i>Vodyanoi stringeri</i> sp. nov., and <i>Archaeotolithus solidus</i> sp. nov.). We find significant dominance of basally branching decabrachians over bony fish in nearly all investigated assemblages and that teleosts are numerically dominated by leptolepiforms. Based on our findings, we propose that crown-teleosts diversified during the Middle Jurassic and that their radiation started in the Late Jurassic. The shift between statolith-to-otolith abundance ratios in the investigated assemblages documents a change from a cephalopod-dominated nekton during the Jurassic to a mostly teleost-dominated nekton during the Cretaceous. We propose that this change started as early as during the latest Jurassic.
DOI: 10.6084/m9.figshare.29986505.v1
title: Jurassic teleost diversity and abundance changes, recorded by otolith and cephalopod statolith assemblages

description: We describe otolith and cephalopod statolith assemblages from the Jurassic of Lithuania, Poland, and the U.K. We report two new teleost fish genera (<i>Juraelops</i> gen. nov. and <i>Vodyanoi</i> gen. nov.), and eight new fish species (<i>Pteralbula jurassica</i> sp. nov., <i>Protalbula dorsetensis</i> sp. nov., <i>Palealbula ventai</i> sp. nov., <i>Palealbula crenulata</i> sp. nov., <i>Juraelops prodigiosum</i> sp. nov., <i>Vodyanoi schwarzhansi</i> sp. nov., <i>Vodyanoi stringeri</i> sp. nov., and <i>Archaeotolithus solidus</i> sp. nov.). We find significant dominance of basally branching decabrachians over bony fish in nearly all investigated assemblages and that teleosts are numerically dominated by leptolepiforms. Based on our findings, we propose that crown-teleosts diversified during the Middle Jurassic and that their radiation started in the Late Jurassic. The shift between statolith-to-otolith abundance ratios in the investigated assemblages documents a change from a cephalopod-dominated nekton during the Jurassic to a mostly teleost-dominated nekton during the Cretaceous. We propose that this change started as early as during the latest Jurassic.
DOI: 10.6084/m9.figshare.30071289.v1
title: Coelacanthiform fishes of the British Rhaetian

description: Coelacanth fishes are well represented in the fossil record, ranging in age from the Early Devonian to the present day, though now represented by only two species of the genus <i>Latimeria</i>. After some diversification of form in the Early Devonian, the morphology of coelacanths remained relatively stable throughout the Mesozoic, with distinctive mawsoniid and latimeriid coelacanth morphologies established by the Late Jurassic. Coelacanth remains are well known from Paleozoic and Cretaceous rocks in Britain but poorly known from the Late Triassic. Recently, it was shown that many isolated coelacanth bones from the Rhaetian (latest Triassic) bonebeds had been misidentified as elements of the enigmatic thalattosaur <i>Pachystropheus rhaeticus</i>. We further identify a number of coelacanth bones, primarily from the skull, providing descriptions of each for the first time. For some bones, we describe numerous morphotypes, suggesting more than one taxon was present. Most specimens pertain to Mawsoniidae, while others may be assignable to Latimeriidae or are indeterminate coelacanths. We highlight taxonomic misidentifications to show that coelacanth specimens from the British Rhaetian have been confused as far back as the late 1800s. Numerous morphotypes of many bones in the sample hint at a complex community structure, with individuals of varying age, size, and likely several species, supported within the ecosystem. The fossil occurrences suggest these Triassic coelacanths preferred shallow water environments, matching our observation that many specimens pertain to Mawsoniidae, a clade elsewhere reported from brackish, near-shore conditions. In light of recent findings, the new specimens reinforce a European Triassic diversification for Mawsoniidae, which probably influenced their subsequent diversification and dispersion during the Jurassic.
DOI: 10.6084/m9.figshare.30071289
title: Coelacanthiform fishes of the British Rhaetian

description: Coelacanth fishes are well represented in the fossil record, ranging in age from the Early Devonian to the present day, though now represented by only two species of the genus <i>Latimeria</i>. After some diversification of form in the Early Devonian, the morphology of coelacanths remained relatively stable throughout the Mesozoic, with distinctive mawsoniid and latimeriid coelacanth morphologies established by the Late Jurassic. Coelacanth remains are well known from Paleozoic and Cretaceous rocks in Britain but poorly known from the Late Triassic. Recently, it was shown that many isolated coelacanth bones from the Rhaetian (latest Triassic) bonebeds had been misidentified as elements of the enigmatic thalattosaur <i>Pachystropheus rhaeticus</i>. We further identify a number of coelacanth bones, primarily from the skull, providing descriptions of each for the first time. For some bones, we describe numerous morphotypes, suggesting more than one taxon was present. Most specimens pertain to Mawsoniidae, while others may be assignable to Latimeriidae or are indeterminate coelacanths. We highlight taxonomic misidentifications to show that coelacanth specimens from the British Rhaetian have been confused as far back as the late 1800s. Numerous morphotypes of many bones in the sample hint at a complex community structure, with individuals of varying age, size, and likely several species, supported within the ecosystem. The fossil occurrences suggest these Triassic coelacanths preferred shallow water environments, matching our observation that many specimens pertain to Mawsoniidae, a clade elsewhere reported from brackish, near-shore conditions. In light of recent findings, the new specimens reinforce a European Triassic diversification for Mawsoniidae, which probably influenced their subsequent diversification and dispersion during the Jurassic.
DOI: 10.6084/m9.figshare.30022280
title: New fossil mammal remains from the Chorrillo Formation (Maastrichtian, Upper Cretaceous), Santa Cruz Province, Argentina

description: Study of the outcrops of the Chorrillo Formation (Upper Cretaceous, Patagonia, Argentina), resulted in the discovery of a large number of new vertebrates, including mammals, such as the first Cretaceous platypus from South America, gondwanatherians, and a large therian. The aim of the present contribution is to describe new mammalian remains from the Chorrillo Formation. The new specimens include remains of the gondwanatherian <i>Magallanodon baikashkenke</i>, the new species <i>Magallanodon terrwerr</i>, the first report of meridiolestidans (<i>Orretherium</i>, a small indeterminate meridiolestidan and a large indeterminate mesungulatoid), new remains of the therian <i>Patagomaia chainko</i>, and new poscranial remains of indeterminate mammals. The analysis of the <i>Magallanodon terrwerr</i> sp. nov. allowed to modify previous identifications of the isolated molariforms of gondwanatherians. In addition, the tooth assigned to <i>Orretherium</i> expands the knowledge of the upper molariform anatomy of this species. The remains assigned to an indeterminate mesungulatoid are larger than any known Mesozoic meridiolestidan. In comparisons with other fossiliferous localities, Chorrillo/Dorotea Formation mammal assemblage is one of the more diverse known faunas, represented by 6 different taxa, which is only surpassed by the Los Alamitos Formation, with 11 described species. Further, the presence of a monotreme, a very large therian, and <i>Magallanodon</i> indicate that these southern assemblages were far different from those coming from northern Patagonia, a hypothesis supported by other faunal evidence.
DOI: 10.6084/m9.figshare.30022280.v1
title: New fossil mammal remains from the Chorrillo Formation (Maastrichtian, Upper Cretaceous), Santa Cruz Province, Argentina

description: Study of the outcrops of the Chorrillo Formation (Upper Cretaceous, Patagonia, Argentina), resulted in the discovery of a large number of new vertebrates, including mammals, such as the first Cretaceous platypus from South America, gondwanatherians, and a large therian. The aim of the present contribution is to describe new mammalian remains from the Chorrillo Formation. The new specimens include remains of the gondwanatherian <i>Magallanodon baikashkenke</i>, the new species <i>Magallanodon terrwerr</i>, the first report of meridiolestidans (<i>Orretherium</i>, a small indeterminate meridiolestidan and a large indeterminate mesungulatoid), new remains of the therian <i>Patagomaia chainko</i>, and new poscranial remains of indeterminate mammals. The analysis of the <i>Magallanodon terrwerr</i> sp. nov. allowed to modify previous identifications of the isolated molariforms of gondwanatherians. In addition, the tooth assigned to <i>Orretherium</i> expands the knowledge of the upper molariform anatomy of this species. The remains assigned to an indeterminate mesungulatoid are larger than any known Mesozoic meridiolestidan. In comparisons with other fossiliferous localities, Chorrillo/Dorotea Formation mammal assemblage is one of the more diverse known faunas, represented by 6 different taxa, which is only surpassed by the Los Alamitos Formation, with 11 described species. Further, the presence of a monotreme, a very large therian, and <i>Magallanodon</i> indicate that these southern assemblages were far different from those coming from northern Patagonia, a hypothesis supported by other faunal evidence.
DOI: 10.17169/refubium-41899
title: Replication Data for: Anorthositic lunar regolith breccia Dhofar 1769—Clear indications for repeated mixing of impact melt lithologies

description: Abstract The lunar regolith breccia Dhofar 1769, which was found in 2012 as a single 125 g piece in the Zufar desert area of Oman, contains a relatively large, dark-colored impact melt breccia embedded in a fine-grained clastic matrix. The internal texture of the fragment indicates the repeated melt breccia formation on the lunar surface, their repeated brecciation, and mixing in second, third, and fourth generations of brecciated rock types. The chemical and mineralogical data reveal the incorporation of a feldspar-rich subophitic crystalline melt within a feldspar-rich microporphyritic crystalline melt breccia. This lithic paragenesis itself is embedded within a mafic, crystalline melt breccia. The entire breccia with the three different impact melts has been finally incorporated into the whole rock breccia. The three impact melts are mixtures of different source rocks and impact projectiles, based on the obtained minor and trace element compositions (in particular of Ni and the rare earth elements [REE]) of the impact melt lithologies. For all processes of impact melt formation, additional steps of their brecciation and re-lithification require a minimum number of seven impact processes.