cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/e120321v10-97100
title: Global Reactions to COVID-19 on Twitter: A Labelled Dataset with Latent Topic, Sentiment and Emotion Attributes

description: This project aims to present a large dataset for researchers to discover public conversation on Twitter surrounding the COVID-19 pandemic. As strong concerns and emotions are expressed in the publicly available tweets, we annotated seventeen latent semantic attributes for each public tweet using natural language processing techniques and machine-learning based algorithms. The latent semantic attributes include: 1) ten attributes indicating the tweet’s relevance to ten detected topics, 2) five quantitative attributes indicating the degree of intensity in the valence (i.e., unpleasantness/pleasantness) and emotional intensities across four primary emotions of fear, anger, sadness and joy, and 3) two qualitative attributes indicating the sentiment category and the most dominant emotion category, respectively.
description: Twitter posts.
DOI: 10.6084/m9.figshare.14749530.v1
title: Viability fingerprint of glioblastoma cell lines: roles of mitotic, proliferative, and epigenetic targets

description: <b>The normalized viability assay and IF assay data together with statistical analyses (t-test, U-test, or ANOVA) from the manuscript submitted for publication in Nature Scientific Reports.</b> This data was used for compiling Figures 1-4 and Supplementary Figures S1, S3, S4.<b>The images with non-modified contrast or brightness representing Figure 5 and Supplementary Figure S4 from the manuscript submitted for publication in Nature Scientific Reports.</b> Representative microscopy images from IF assay in U-251 MG (left panel) and T98-G (right panel). The channels are indicated above the images and the treatment conditions (48 h) on the left (please note that in one image, the treatment was carried out at higher concentration of lomustine). The images were collected within the same independent experiment.
DOI: 10.6084/m9.figshare.14749530
title: Viability fingerprint of glioblastoma cell lines: roles of mitotic, proliferative, and epigenetic targets

description: <b>The normalized viability assay and IF assay data together with statistical analyses (t-test, U-test, or ANOVA) from the manuscript submitted for publication in Nature Scientific Reports.</b> This data was used for compiling Figures 1-4 and Supplementary Figures S1, S3, S4.<b>The images with non-modified contrast or brightness representing Figure 5 and Supplementary Figure S4 from the manuscript submitted for publication in Nature Scientific Reports.</b> Representative microscopy images from IF assay in U-251 MG (left panel) and T98-G (right panel). The channels are indicated above the images and the treatment conditions (48 h) on the left (please note that in one image, the treatment was carried out at higher concentration of lomustine). The images were collected within the same independent experiment.
DOI: 10.15151/esrf-es-552102601
title: Structural biology at Umeå University

description: The BAG consists out of 7 groups that are heavily involved in macromolecular crystallography, as well as other structural biology techniques, at Umeå University, Sweden. We work on a diverse set of biological questions, ranging from understanding the structure and function of Gram-positive Type 4 Secretion Systems, mobile genetic elements in Staphylococcus aureus, DNA and RNA polymerases, effector protein in Type 6 Secretion Systems and transcriptional regulators.
DOI: 10.15151/esrf-es-498249483
title: Macromolecular crystallography at the Philipps University Marburg (MarBAG)

description: Located at the Philipps-University-Marburg and the Max-Planck-Institute for terrestrial Microbiology in Marburg, Germany, the MarBAG employs X-ray crystallography to answer fundamental questions involving synthesis and assembly of macromolecular machines and cellular structures (e.g. CO2-fixation pathways, flagellar biosynthesis, CRISPR-Cas Systems, cell-wall-related processes). Our analysis of the structural basis of CO2 fixation and the synthesis of the green-house gas methane will help to engineer these processes as tools in climate control. Furthermore, we are interested in plant-pathogen interactions and the function of nucleotide derived signalling molecules in cellular stress physiology and organization. Currently, a 200 keV cryo-electron microscope is being installed at the UMR to complement our efforts to structurally characterize macromolecular complexes, which do not readily crystallize.
DOI: 10.15151/esrf-es-514133662
title: Paris Rive-Gauche BAG: from structure to drug design

description: Our BAG was created in 2006 to federate well-established structural biology laboratories from south Paris. At present, several projects are investigated by different teams from 5 Institutes: (1) I2BC (Institut de Biologie Intégrative de la Cellule), (2) IBPC (Institut de Biologie Physico-Chimique), (3) INSERM (Institut National de la Santé et de la Recherche Médicale), (4) LBPA (Laboratoire de Biologie et Pharmacologie Appliquée) and (5) CiTCoM (Cibles Thérapeutiques et Conception de Médicaments, ex-name LCRB). Our research area focuses on many important biological systems involved in human pathology or infectious diseases, including molecular chaperones, DNA recombination, RNA maturation, ribosome biogenesis, telomerase assembly, bacterial toxins, malaria disease, neurodegenerative disease, drugs resistance and cell-signalling.
DOI: 10.15151/esrf-es-514135249
title: SAARLAND BAG: ATOMIC MECHANISMS OF ACTION OF MEMBRANE PROTEINS AND BIOSYNTHETIC ENZYMES

description: Projects are focussed primarily within the framework of the DFG-funded excellence network program on "Ca2+signals: Molecular Mechanisms und Integrative Functions" at Saarland University and a new joint multidisciplinary initiative of the University with the Helmholtz Institute of Pharmaceutical Research Saarland on natural bioactive compounds including their interactions with their target proteins. These projects involve the structure determination of membrane proteins and soluble proteins.
DOI: 10.15151/esrf-es-514137407
title: Belgium BAG
DOI: 10.15151/esrf-es-553119451
title: EH1 setup

description: pdf in EH1
DOI: 10.15151/esrf-es-544348447
title: Evaluation of the state of Ru in IrRu and IrRuTi alloys for oxygen evolution reaction in water electrolysers using tender XAS/XES

description: Ir-based catalysts are state-of-the-art materials for oxygen evolution reaction in proton exchange membrane water electrolyzers. The addition of Ru leads to higher activity of these electrocatalysts. Here, we propose to compare IrRu and IrRuTi alloys before and after the anodic polarization in order to evaluate the changes in the state of Ru after the oxygen evolution reaction as well as to define the role of Ti additives onto Ru oxidation state. The obtained results will be correlated with electrochemical activity-stability data.
DOI: 10.15151/esrf-es-550510265
title: Structural studies of beta-cardiac myosin

description: We aim to solve the high-resolution structure of the auto-inhibited state of beta-cardiac myosin by cryo-EM
DOI: 10.15151/esrf-es-514136925
title: Following in real-time the structural changes during Hepatitis B virus assembly
DOI: 10.11588/data/prqila/7dub4a
title: OnlineAppendix.zip

description: :unav
DOI: 10.11588/data/prqila
title: Let the team fix it? - Performance and mood of depressed workers and coworkers in different work contexts [Research data]

description: Depression in the workplace is a significant factor for reduced personal well-being and productivity. Consequently, this has negative effects on the economic success of the companies in which depressed people are employed. In addition, the economy has to deal with the significant burden of this illness on the health system. In this paper, we investigated how different working contexts —working in a group or individually—influenced depressed individuals towards higher or lower well-being and productivity. We examined this using a laboratory experiment. In this setting, we were also able to analyze how, in turn, a depressive individual impacted the productivity and affective situation of their workgroup, reflecting the company perspective. The experimental design mimicked the very basic processes of a workplace in a stylized way. We used two distinct samples: subclinically and clinically depressed, both working in a group with healthy controls. As expected, we found generally lower performance in the clinically depressed sample, but in the subclinically depressed sample, we only found this in the individual work context. In contrast to our expectations, the performance of subclinically depressed individuals working in groups with healthy controls was even higher than that of healthy controls in homogenously healthy groups. The performance of the entire group with a depressed member was lower for the sample with clinically manifested depression, while the performance of groups with a subclinically depressed participant was significantly higher than the performance of homogeneously non-depressed control groups. We discuss our results with a focus on the design of workplaces to both re-integrate clinically depressed employees and prevent subclinically depressed employees from developing major depression.
DOI: 10.14457/rmutk.doc.2021.1
title: การตลาดสำหรับผลิตภัณฑ์อาหาร
DOI: 10.5281/zenodo.5525788
title: Source data for "Conformer-specific polar cycloaddition of dibromobutadiene with trapped propene ions"

description: Experimental primary data and calculated molecular structures for the publication "Conformer-specific polar cycloaddition of dibromobutadiene with trapped propene ions”
description: {"references": ["A. Kilaj et al., arXiv:2107.13858"]}
DOI: 10.5281/zenodo.5525787
title: Source data for "Conformer-specific polar cycloaddition of dibromobutadiene with trapped propene ions"

description: Experimental primary data and calculated molecular structures for the publication "Conformer-specific polar cycloaddition of dibromobutadiene with trapped propene ions”
description: {"references": ["A. Kilaj et al., arXiv:2107.13858"]}
DOI: 10.5517/ccdc.csd.cc22fmcj
title: CCDC 1919717: Experimental Crystal Structure Determination

description: Related Article: Yabo Deng, Zhenghao Dong, Fengyun Gao, Yifei Guo, Mengmeng Sun, Yongzhen Li, Yalan Wang, Qushuo Chen, Kairong Wang, Wenjin Yan|2021|J.Org.Chem.|86|13011|doi:10.1021/acs.joc.1c01705
DOI: 10.5517/ccdc.csd.cc22fmdk
title: CCDC 1919718: Experimental Crystal Structure Determination

description: Related Article: Yabo Deng, Zhenghao Dong, Fengyun Gao, Yifei Guo, Mengmeng Sun, Yongzhen Li, Yalan Wang, Qushuo Chen, Kairong Wang, Wenjin Yan|2021|J.Org.Chem.|86|13011|doi:10.1021/acs.joc.1c01705
DOI: 10.5517/ccdc.csd.cc22fmfl
title: CCDC 1919719: Experimental Crystal Structure Determination

description: Related Article: Yabo Deng, Zhenghao Dong, Fengyun Gao, Yifei Guo, Mengmeng Sun, Yongzhen Li, Yalan Wang, Qushuo Chen, Kairong Wang, Wenjin Yan|2021|J.Org.Chem.|86|13011|doi:10.1021/acs.joc.1c01705
DOI: 10.5517/ccdc.csd.cc22fmgm
title: CCDC 1919720: Experimental Crystal Structure Determination

description: Related Article: Yabo Deng, Zhenghao Dong, Fengyun Gao, Yifei Guo, Mengmeng Sun, Yongzhen Li, Yalan Wang, Qushuo Chen, Kairong Wang, Wenjin Yan|2021|J.Org.Chem.|86|13011|doi:10.1021/acs.joc.1c01705
DOI: 10.5517/ccdc.csd.cc23f5rh
title: CCDC 1949086: Experimental Crystal Structure Determination

description: Related Article: Jugal Kishore Rai Deka, Biswajit Sahariah, Sushil S. Sakpal, Arun Kumar Bar, Sayan Bagchi, Bani Kanta Sarma|2021|Org.Lett.|23|7003|doi:10.1021/acs.orglett.1c00834
DOI: 10.5517/ccdc.csd.cc23f5sj
title: CCDC 1949087: Experimental Crystal Structure Determination

description: Related Article: Jugal Kishore Rai Deka, Biswajit Sahariah, Sushil S. Sakpal, Arun Kumar Bar, Sayan Bagchi, Bani Kanta Sarma|2021|Org.Lett.|23|7003|doi:10.1021/acs.orglett.1c00834
DOI: 10.5517/ccdc.csd.cc23nylb
title: CCDC 1956552: Experimental Crystal Structure Determination

description: Related Article: Jugal Kishore Rai Deka, Biswajit Sahariah, Sushil S. Sakpal, Arun Kumar Bar, Sayan Bagchi, Bani Kanta Sarma|2021|Org.Lett.|23|7003|doi:10.1021/acs.orglett.1c00834
DOI: 10.25442/hku.16565025
title: Supporting data for "The Role of Natural Killer Cells in Tumor Recurrence after Liver Transplantation"

description: This dataset supports the research topic, "The Role of Natural Killer Cells in Tumor Recurrence after Liver Transplantation". The clinical association of NK cells in liver transplantation patients was analyzed. The function of NKG2A+NK cells were investigated in animal models. The role of liver resident NK cells in the hepatic ischemia/reperfusion injury was explored.
DOI: 10.25442/hku.16565025.v1
title: Supporting data for "The Role of Natural Killer Cells in Tumor Recurrence after Liver Transplantation"

description: This dataset supports the research topic, "The Role of Natural Killer Cells in Tumor Recurrence after Liver Transplantation". The clinical association of NK cells in liver transplantation patients was analyzed. The function of NKG2A+NK cells were investigated in animal models. The role of liver resident NK cells in the hepatic ischemia/reperfusion injury was explored.
DOI: 10.25442/hku.16575251
title: Dataset for "Preservation Of β Cell Mass by Targeting Fatty Acid Oxidation in Islet Macrophages Mechanisms and Therapeutic Interventions"

description: In this study, we aimed to investigate the possible role of CPT1a in macrophage function and polarization, and the role of islet resident macrophage in beta cell proliferation. This dataset includes phenotype information of the MKO (macrophage specific Cpt1a knockout) mice model, including bodyweight, glucose tolerance, insulin secretion etc. As well as our further analysis of the nature of islet-resident macrophages and their impact to beta cell function and proliferation.
DOI: 10.25442/hku.16575251.v1
title: Dataset for "Preservation Of β Cell Mass by Targeting Fatty Acid Oxidation in Islet Macrophages Mechanisms and Therapeutic Interventions"

description: In this study, we aimed to investigate the possible role of CPT1a in macrophage function and polarization, and the role of islet resident macrophage in beta cell proliferation. This dataset includes phenotype information of the MKO (macrophage specific Cpt1a knockout) mice model, including bodyweight, glucose tolerance, insulin secretion etc. As well as our further analysis of the nature of islet-resident macrophages and their impact to beta cell function and proliferation.
DOI: 10.25442/hku.16571262
title: Supporting data for “Establishment of high-throughput screening platform for the identification of pharmacological drugs in modulating early trophoblast differentiation from human Expanded Potential Stem Cells”

description: According to the structure of my thesis, the data were divided into three parts. The data in first folder introduced the early expanded potential stem cell trophoblast differentiation; The second folder included the data of drug screening and validation results. The last fold showed the studies of selected compounds and target genes which including in vitro and in vivo studies. Figures and tabulated data are both involved and uploaded.
DOI: 10.25442/hku.16571262.v1
title: Supporting data for “Establishment of high-throughput screening platform for the identification of pharmacological drugs in modulating early trophoblast differentiation from human Expanded Potential Stem Cells”

description: According to the structure of my thesis, the data were divided into three parts. The data in first folder introduced the early expanded potential stem cell trophoblast differentiation; The second folder included the data of drug screening and validation results. The last fold showed the studies of selected compounds and target genes which including in vitro and in vivo studies. Figures and tabulated data are both involved and uploaded.
DOI: 10.25442/hku.16602179
title: Supporting data for "Sub-5 nm Fabrication on Free-standing Structure Enabled by Helium Ion Microscope"

description: The file named "Supporting data for-Direct visualization of beam-resist interaction volume for sub-nanometer helium ion beam lithography" contains the PPT describe the process to visulize the interaction volumn and the word file provides the supporint information.<br>The file name "Supporting data for-SHIBL on Free-standing SiNx to Fabricate nanostructures with Sub-nanometer LER" <br>contains the supporting data describe a strategy to fabricate nanostructures with sub-nanometer line edge roughness, the AFM data record the resist thinkness, the codes and the simulation data describe how to simulate LER as the resist thicnkess variate and The TEM image records the nanostructures at sub-nanometer accuracy.<br>The file named "Supporting data for-Sub-5nm Nanogap with Sub-nanometer Roughness and Sub-nanometer Accuracy" contains the codes file demonstrate how to calculate gap roughness, the TEM image files record how a nanogap is shrunk and functionlized by HIM and the HIM images record the nanogap milled by SHIBM.<br>
DOI: 10.25442/hku.16602179.v1
title: Supporting data for "Sub-5 nm Fabrication on Free-standing Structure Enabled by Helium Ion Microscope"

description: The file named "Supporting data for-Direct visualization of beam-resist interaction volume for sub-nanometer helium ion beam lithography" contains the PPT describe the process to visulize the interaction volumn and the word file provides the supporint information.<br>The file name "Supporting data for-SHIBL on Free-standing SiNx to Fabricate nanostructures with Sub-nanometer LER" <br>contains the supporting data describe a strategy to fabricate nanostructures with sub-nanometer line edge roughness, the AFM data record the resist thinkness, the codes and the simulation data describe how to simulate LER as the resist thicnkess variate and The TEM image records the nanostructures at sub-nanometer accuracy.<br>The file named "Supporting data for-Sub-5nm Nanogap with Sub-nanometer Roughness and Sub-nanometer Accuracy" contains the codes file demonstrate how to calculate gap roughness, the TEM image files record how a nanogap is shrunk and functionlized by HIM and the HIM images record the nanogap milled by SHIBM.<br>
DOI: 10.25442/hku.16601066
title: Supporting data for “Chinese University English Majors' Foreign Language Anxiety: Its Component Elements, Variation across Classroom and Online Learning Settings, and Relations to Motivation”

description: The data files include three rounds of questionnaire and interview data about Chinese university English majors' foreign language anxiety (FLA) inside and outside the classroom, FLA in face-to-face teaching context and online teaching setting, and their English learning motivation. Phase 1 survey data are about the participants' FLA in face-to-face teaching context, and Phase 2 survey data are about their FLA in online teaching setting. Phase 3 survey data are about their in-class and out-of-class FLA and L2 motivation. The three rounds of interviews are about their FLA and English learning motivation.
DOI: 10.25442/hku.16601066.v1
title: Supporting data for “Chinese University English Majors' Foreign Language Anxiety: Its Component Elements, Variation across Classroom and Online Learning Settings, and Relations to Motivation”

description: The data files include three rounds of questionnaire and interview data about Chinese university English majors' foreign language anxiety (FLA) inside and outside the classroom, FLA in face-to-face teaching context and online teaching setting, and their English learning motivation. Phase 1 survey data are about the participants' FLA in face-to-face teaching context, and Phase 2 survey data are about their FLA in online teaching setting. Phase 3 survey data are about their in-class and out-of-class FLA and L2 motivation. The three rounds of interviews are about their FLA and English learning motivation.
DOI: 10.25442/hku.16599902
title: Supporting data for “Radiomics, machine learning, deep learning in oncologic imaging: applications in nasopharyngeal carcinoma and esophageal squamous cell carcinoma”.

description: The dataset is the supporting data for thesis titled "<b>Radiomics, machine learning, deep learning in oncologic imaging: applications in nasopharyngeal carcinoma and esophageal squamous cell carcinoma</b>". esophageal squamous cell carcinoma (ESCC) have for years been the leading causes of death in Hong Kong. In current clinical practice, non-invasive imaging techniques are commonly used for these cancer types. The application of radiomics, machine learning, and deep learning has provided a novel scope for advanced imaging analysis for cancer patients.<br>The uploaded data records include the code and example data of the patient cohorts in the thesis. This code includes feature extraction from Radiomics and pretrained Deep Convolutional Neural Network model and then further model training and validation by machine learning approaches.
DOI: 10.25442/hku.16599902.v1
title: Supporting data for “Radiomics, machine learning, deep learning in oncologic imaging: applications in nasopharyngeal carcinoma and esophageal squamous cell carcinoma”.

description: The dataset is the supporting data for thesis titled "<b>Radiomics, machine learning, deep learning in oncologic imaging: applications in nasopharyngeal carcinoma and esophageal squamous cell carcinoma</b>". esophageal squamous cell carcinoma (ESCC) have for years been the leading causes of death in Hong Kong. In current clinical practice, non-invasive imaging techniques are commonly used for these cancer types. The application of radiomics, machine learning, and deep learning has provided a novel scope for advanced imaging analysis for cancer patients.<br>The uploaded data records include the code and example data of the patient cohorts in the thesis. This code includes feature extraction from Radiomics and pretrained Deep Convolutional Neural Network model and then further model training and validation by machine learning approaches.
DOI: 10.6084/m9.figshare.16676340
title: Table S1 from Reassessing the role of climate change in the Tupi expansion (South America, 5000–500 BP)

description: Archaeological 14C dates selected for comparison with the model results.
DOI: 10.6084/m9.figshare.16676337
title: Table S3 from Reassessing the role of climate change in the Tupi expansion (South America, 5000–500 BP)

description: RMSE scores of the cellular automaton models under different parameters.
DOI: 10.6084/m9.figshare.16676337.v1
title: Table S3 from Reassessing the role of climate change in the Tupi expansion (South America, 5000–500 BP)

description: RMSE scores of the cellular automaton models under different parameters.
DOI: 10.6084/m9.figshare.16676340.v1
title: Table S1 from Reassessing the role of climate change in the Tupi expansion (South America, 5000–500 BP)

description: Archaeological 14C dates selected for comparison with the model results.
DOI: 10.6084/m9.figshare.16676346.v1
title: Table S2 from Reassessing the role of climate change in the Tupi expansion (South America, 5000–500 BP)

description: RMSE scores of the equation-based models under different parameters.
DOI: 10.6084/m9.figshare.16676346
title: Table S2 from Reassessing the role of climate change in the Tupi expansion (South America, 5000–500 BP)

description: RMSE scores of the equation-based models under different parameters.
DOI: 10.25442/hku.16608856
title: Supporting data for "Epigenetic-associated phenotypic plasticity in the edible oyster under ocean acidification"

description: Contain clean data from methylRAD sequencing for quality control, methyl level distribution, genome mapping, methylation expression, sites level annotation, pearson correlation, gene depth statistics, differentially methylated sites and genes, the function of differentially methylated genes, supplementary materials which include bioinformatic flow chart, enrichment formula and score, illumine quality, as well as the technicality process for methylRAD enzymes including FspEI and LpnPI.