cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2gsbh3
title: CCDC 2287505: Experimental Crystal Structure Determination

description: Related Article: Shaoting Guo, Long Wang, Xiangbin Tian, Zhenxiang Zhao, Hua Wang|2023|J.Mater.Chem.C|11|12511|doi:10.1039/D3TC02831C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fxkvs
title: CCDC 2261786: Experimental Crystal Structure Determination

description: Related Article: Prabir Ghosh, Christopher M. Pask, Hari Babu Vasili, Nobuto Yoshinari, Takumi Konno, Oscar Cespedes, Cristian Enachescu, Pradip Chakraborty, Malcolm A. Halcrow|2023|J.Mater.Chem.C|11|12570|doi:10.1039/D3TC02683C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fxkwt
title: CCDC 2261787: Experimental Crystal Structure Determination

description: Related Article: Prabir Ghosh, Christopher M. Pask, Hari Babu Vasili, Nobuto Yoshinari, Takumi Konno, Oscar Cespedes, Cristian Enachescu, Pradip Chakraborty, Malcolm A. Halcrow|2023|J.Mater.Chem.C|11|12570|doi:10.1039/D3TC02683C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fxkxv
title: CCDC 2261788: Experimental Crystal Structure Determination

description: Related Article: Prabir Ghosh, Christopher M. Pask, Hari Babu Vasili, Nobuto Yoshinari, Takumi Konno, Oscar Cespedes, Cristian Enachescu, Pradip Chakraborty, Malcolm A. Halcrow|2023|J.Mater.Chem.C|11|12570|doi:10.1039/D3TC02683C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fxl32
title: CCDC 2261794: Experimental Crystal Structure Determination

description: Related Article: Prabir Ghosh, Christopher M. Pask, Hari Babu Vasili, Nobuto Yoshinari, Takumi Konno, Oscar Cespedes, Cristian Enachescu, Pradip Chakraborty, Malcolm A. Halcrow|2023|J.Mater.Chem.C|11|12570|doi:10.1039/D3TC02683C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fxl43
title: CCDC 2261795: Experimental Crystal Structure Determination

description: Related Article: Prabir Ghosh, Christopher M. Pask, Hari Babu Vasili, Nobuto Yoshinari, Takumi Konno, Oscar Cespedes, Cristian Enachescu, Pradip Chakraborty, Malcolm A. Halcrow|2023|J.Mater.Chem.C|11|12570|doi:10.1039/D3TC02683C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fxl54
title: CCDC 2261796: Experimental Crystal Structure Determination

description: Related Article: Prabir Ghosh, Christopher M. Pask, Hari Babu Vasili, Nobuto Yoshinari, Takumi Konno, Oscar Cespedes, Cristian Enachescu, Pradip Chakraborty, Malcolm A. Halcrow|2023|J.Mater.Chem.C|11|12570|doi:10.1039/D3TC02683C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.24205953.v1
title: Supplemental Data 2.zip

description: Results log and output from ColabFold for PP_1066, PP_1066* (PP_1066_mut) and PP3551* (PP_3551_mut).
DOI: 10.6084/m9.figshare.24205953
title: Supplemental Data 2.zip

description: Results log and output from ColabFold for PP_1066, PP_1066* (PP_1066_mut) and PP3551* (PP_3551_mut).
DOI: 10.6084/m9.figshare.24205953.v2
title: Supplemental Data B

description: Results log and output from ColabFold for PP_1066, PP_1066* (PP_1066_mut) and PP3551* (PP_3551_mut).
DOI: 10.6084/m9.figshare.24205968
title: Supplemental Data A

description: Results log from DataMonkey version of HyPhy’s absREL and MEME (see reference 45). Contents include original fasta, log.txt, result.json, results tree, results table (if applicable), and results summary figure.
DOI: 10.6084/m9.figshare.24205968.v2
title: Supplemental Data A

description: Results log from DataMonkey version of HyPhy’s absREL and MEME (see reference 45). Contents include original fasta, log.txt, result.json, results tree, results table (if applicable), and results summary figure.
DOI: 10.11588/data/d7mize/jyai3j
title: 1_furthersites_north.pdf
DOI: 10.11588/data/d7mize/crepy5
title: 1-1_annan_zhongdian-guxue_derong.pdf
DOI: 10.11588/data/d7mize/wa19w2
title: 5-13_baidamo-laochang_xinping_2018.pdf
DOI: 10.11588/data/d7mize/fjgnas
title: 3-3_wushantou-songgui-xiyi.kmz
DOI: 10.11588/data/d7mize/o0ru95
title: 8-8_ban-thi_bac-kan_2017.pdf
DOI: 10.11588/data/d7mize/mpyiek
title: 2-10_nashigang_xundian_2020.pdf
DOI: 10.11588/data/d7mize/qwojfb
title: 3_furthersites_yongping.kmz
DOI: 10.11588/data/d7mize/ottbld
title: 5-5b_puzhangshan_chuxiong.kmz
DOI: 10.11588/data/d7mize/984xfr
title: 4-4_dakuangshan_dehong.kmz
DOI: 10.11588/data/d7mize/nkfoev
title: 2-5b_woqianchang_huize.kmz
DOI: 10.6084/m9.figshare.24213249
title: Y. F. Manuscript Data.xlsx

description: <b>Abstract</b><b>Introduction:</b><b> </b>Cellular immunotherapy has greatly improved cancer treatment in recent years. For instance, chimeric antigen receptor (CAR) T-cell therapy has been proven highly effective in treating hematological malignancies, and many CAR cell designs are being explored for solid tumors. However, many questions remain why responses differ across patients and some tumor types are resistant. Improved and relatively inexpensive ways to monitor these cells could provide some answers. Clinically, blood tests are regularly used to monitor these therapies, but blood signals often do not reflect the activity of immune cells within the tumor(s). Here, using the synthetic Notch (synNotch) receptor that tethers antigen binding to customized transgene expression, we linked intratumoral immune-cancer cell communication to a simple secreted reporter blood test. Specifically, we engineered immune cells with a CD19-targeted synNotch receptor and demonstrated that binding to CD19 on cancer cells <i>in vivo </i>resulted in the production of secreted embryonic alkaline phosphatase (SEAP) at levels that are readily detected in the blood.<b>Methods and Results:</b><b> </b>Jurkat T cells were engineered via sequential lentiviral transduction of two components: an anti-CD19 synNotch receptor and a synNotch response element encoding SEAP. Co-culture of engineered cells with CD19<sup>+</sup>, but not CD19<sup>-</sup>, Nalm6 cells, resulted in significantly elevated SEAP in media. Nod-scid-gamma (NSG) mice were subcutaneously injected with either CD19<sup>+</sup> or CD19<sup>-</sup> Nalm6 cells. Intratumoral injection of engineered T cells (1x10<sup>7</sup>) resulted in significantly elevated blood SEAP activity in mice bearing CD19<sup>+</sup> tumors (n=7), but not CD19<sup>-</sup> tumors (n=5).<b>Discussion: </b>Our synNotch reporter system allows for the monitoring of antigen-dependent intratumoral immune-cancer cell interactions through a simple and convenient blood test. Continued development of this system for different target antigens of interest should provide a broadly applicable platform for improved monitoring of many cell-based immunotherapies during their initial development and clinical translation, ultimately improving our understanding of design considerations and patient-specific responses.
DOI: 10.6084/m9.figshare.24213249.v1
title: Y. F. Manuscript Data.xlsx

description: <b>Abstract</b><b>Introduction:</b><b> </b>Cellular immunotherapy has greatly improved cancer treatment in recent years. For instance, chimeric antigen receptor (CAR) T-cell therapy has been proven highly effective in treating hematological malignancies, and many CAR cell designs are being explored for solid tumors. However, many questions remain why responses differ across patients and some tumor types are resistant. Improved and relatively inexpensive ways to monitor these cells could provide some answers. Clinically, blood tests are regularly used to monitor these therapies, but blood signals often do not reflect the activity of immune cells within the tumor(s). Here, using the synthetic Notch (synNotch) receptor that tethers antigen binding to customized transgene expression, we linked intratumoral immune-cancer cell communication to a simple secreted reporter blood test. Specifically, we engineered immune cells with a CD19-targeted synNotch receptor and demonstrated that binding to CD19 on cancer cells <i>in vivo </i>resulted in the production of secreted embryonic alkaline phosphatase (SEAP) at levels that are readily detected in the blood.<b>Methods and Results:</b><b> </b>Jurkat T cells were engineered via sequential lentiviral transduction of two components: an anti-CD19 synNotch receptor and a synNotch response element encoding SEAP. Co-culture of engineered cells with CD19<sup>+</sup>, but not CD19<sup>-</sup>, Nalm6 cells, resulted in significantly elevated SEAP in media. Nod-scid-gamma (NSG) mice were subcutaneously injected with either CD19<sup>+</sup> or CD19<sup>-</sup> Nalm6 cells. Intratumoral injection of engineered T cells (1x10<sup>7</sup>) resulted in significantly elevated blood SEAP activity in mice bearing CD19<sup>+</sup> tumors (n=7), but not CD19<sup>-</sup> tumors (n=5).<b>Discussion: </b>Our synNotch reporter system allows for the monitoring of antigen-dependent intratumoral immune-cancer cell interactions through a simple and convenient blood test. Continued development of this system for different target antigens of interest should provide a broadly applicable platform for improved monitoring of many cell-based immunotherapies during their initial development and clinical translation, ultimately improving our understanding of design considerations and patient-specific responses.
DOI: 10.6084/m9.figshare.22266313
title: Human lung organoids reveal donor-dependent variability in susceptibility to SARS-CoV-2 variants of concern

description: The emergence of SARS-CoV-2 variants of concern (VOC) Delta (B.1.617.2) and Omicron (B.1.1.529) raised global health concerns about increased pathogenicity. The ability of viruses to replicate in the lower respiratory tract (LRT) is often associated with severe clinical disease, making this an important site to consider when evaluating pathogenicity of SARS-CoV-2 VOCs. Distal human lung organoids (hLOs) are three-dimensional primary cell culture systems that enable the study of physiologically relevant LRT epithelium, including alveolar type II cells. Using hLOs derived from four human donors, we compared the fitness and pathogenicity of SARS-CoV-2 VOC Delta and Omicron, along with an ancestral clade B variant containing the D614G substitution in spike, and evaluated donor-dependent differences in susceptibility to infection. We observed substantial attenuation of Omicron in hLOs and demonstrated enhanced susceptibility to Omicron and D614G replication in hLOs from one donor. Transcriptomic analysis revealed that increased susceptibility to SARS-CoV-2 infection in these hLOs was associated with reduced tonic interferon signaling activity. Overall, we show that hLOs are a useful model to evaluate SARS-CoV-2 VOC fitness and pathogenicity. Additionally, we propose that hLOs may serve as a unique system to model the heterogeneity of SARS-CoV-2 pathogenesis in humans.
DOI: 10.11588/data/d7mize/buuudr
title: Ag-mines_regions.kmz
DOI: 10.6084/m9.figshare.22266313.v1
title: Human lung organoids reveal donor-dependent variability in susceptibility to SARS-CoV-2 variants of concern

description: The emergence of SARS-CoV-2 variants of concern (VOC) Delta (B.1.617.2) and Omicron (B.1.1.529) raised global health concerns about increased pathogenicity. The ability of viruses to replicate in the lower respiratory tract (LRT) is often associated with severe clinical disease, making this an important site to consider when evaluating pathogenicity of SARS-CoV-2 VOCs. Distal human lung organoids (hLOs) are three-dimensional primary cell culture systems that enable the study of physiologically relevant LRT epithelium, including alveolar type II cells. Using hLOs derived from four human donors, we compared the fitness and pathogenicity of SARS-CoV-2 VOC Delta and Omicron, along with an ancestral clade B variant containing the D614G substitution in spike, and evaluated donor-dependent differences in susceptibility to infection. We observed substantial attenuation of Omicron in hLOs and demonstrated enhanced susceptibility to Omicron and D614G replication in hLOs from one donor. Transcriptomic analysis revealed that increased susceptibility to SARS-CoV-2 infection in these hLOs was associated with reduced tonic interferon signaling activity. Overall, we show that hLOs are a useful model to evaluate SARS-CoV-2 VOC fitness and pathogenicity. Additionally, we propose that hLOs may serve as a unique system to model the heterogeneity of SARS-CoV-2 pathogenesis in humans.
DOI: 10.6084/m9.figshare.24213258.v1
title: Twitter Data for Executives

description: Includes tweets and meta-data from executives
DOI: 10.11588/data/d7mize/uwi6aw
title: 4-1_mingguang_tengchong_2016-2018.pdf
DOI: 10.11588/data/d7mize/gichnp
title: 01_north_further_Ag-sites.kmz
DOI: 10.11588/data/d7mize/abphx4
title: 3-7_longwangjian_eryuan_2020.pdf
DOI: 10.11588/data/d7mize/ipowg6
title: 5-5_yongsheng_chuxiong_2019.pdf
DOI: 10.11588/data/d7mize/6qiap2
title: 3-3_wushantou_heqing.pdf
DOI: 10.11588/data/d7mize/00qpyu
title: 4-2_luhong_yingjiang.kmz
DOI: 10.6084/m9.figshare.23629326
title: Spatiotemporally Characterized Ground-Mounted Solar PV Arrays Within California's Central Valley

description: When using this dataset, please cite the peer-reviewed publication found here: https://doi.org/10.1016/j.scitotenv.2022.155240Literature on PV array installations lacks important spatiotemporal details that could help inform future array installations and improve associated policies and incentive programs. Here, we used imagery from the National Agriculture Imagery Program for object based analysis (within eCognition Developer), and imagery from Landsat 5 TM, 7 ETM+ and 8 OLI for temporal analysis (using LandTrendr) to identify and characterize non-residential ground-mounted solar PV arrays in California's Central Valley installed between 2008 and 2018. This dataset includes 210,368 individually identified panels grouped by mount and installation year into 1006 PV arrays. The dataset (PV_ID_panels.shp, PV_ID_CV.csv, & PV_ID_CV.shp) contains the geospatial coordinates, boundaries, installation years, calculated capacity, modeled electricity generation, prior land use, packing factor, mount technology, and other derived attributes (50 in total) for these installations.Dataset applications include land cover analysis, information extraction from existing PV arrays, and training machine learning and object detection algorithms to acquire PV spatiotemporal attributes elsewhere and in updated imagery.
DOI: 10.11588/data/d7mize/wcac7g
title: collectiveMingrecords.pdf
DOI: 10.11588/data/d7mize/cuycac
title: 3-3_wutoushan-songgui-xiyi.kmz
DOI: 10.11588/data/d7mize/ps4pcq
title: Ag-mines_datasheets.kmz
DOI: 10.11588/data/d7mize/rgoyls
title: 3-13_yinchangqing_weishan_2018.pdf
DOI: 10.11588/data/d7mize/gqxxat
title: 1_lanzhou_all_sites_documentation.pdf
DOI: 10.11588/data/d7mize/jocw4o
title: 7-3_bainiu_mengzi_2015.pdf
DOI: 10.11588/data/d7mize/jxrark
title: 4-9_xiyi-laochang_gengma.kmz
DOI: 10.11588/data/d7mize/kta05i
title: 2-3_yinchangpo_yiliang_2017.pdf
DOI: 10.11588/data/d7mize/fbi2jw
title: 5-1_xinglong_binchuan.kmz
DOI: 10.11588/data/d7mize/u7dpkt
title: 7-3_tabai_jianshui.kmz
DOI: 10.11588/data/d7mize/vvg72o
title: 5-6_biaoluoshan_shuangbai.kmz
DOI: 10.11588/data/d7mize/roswsk
title: 2-8_pumie_huidong.kmz
DOI: 10.11588/data/d7mize/escrmj
title: 5-8_yeniu_shuangbai_2016.pdf
DOI: 10.3886/e161061v1
title: Data and Code for: Immigration, Crime, and Crime (Mis)Perceptions

description: This paper studies the effects of immigration on crime and crime perceptions in Chile, where the foreign-born population tripled in less than ten years. We document null effects of immigration on crime but positive and significant effects on crime-related concerns and on preventive behavioral responses, such as investing in home security. We explore several channels and provide suggestive evidence related to low versus high-education immigrants, ethnic-related intergroup threats, and the role of local media.
description: Native and migrant populations in urban municipalities in Chile.
DOI: 10.11588/data/d7mize/toj4zl
title: 8-5_na-pan_bac-kan.kmz
DOI: 10.6084/m9.figshare.24213258
title: Twitter Data and Approval for Executives

description: Includes approval, tweets, and meta-data from executives
DOI: 10.3886/e164541v1
title: Data and Code for: Collateralized Marriage

description: Data and code to replicate empirical results in "Collateralized Marriage."<br><br>Abstract: Marriage rates have become increasingly stratified by homeownership. We investigate this in a household model where investments in public goods reduce future earnings, and thus divorce risk creates inefficiencies. Access to a joint savings technology, like a house, "collateralizes" marriage, providing insurance to the lower earning partner and increasing specialization, public goods, and value from marriage. We use idiosyncratic variation in housing prices to show that homeownership access indeed leads to greater specialization. The model also predicts that policies that erode the marriage contract in other ways will make wealth a more important determinant of marriage, which we confirm empirically.<br><br>Data includes compiled Census / American Community Survey Data, PSID data, SIPP data, ATUS data, and FHFA housing price data, all of which are publicly available.
DOI: 10.6084/m9.figshare.24213234
title: Data for the Synthesis of Women’s Participation in Small-Scale Fisheries Management: Why Women’s Voices Matter

description: These data have been used to conduct a literature review documenting the impacts associated to strengthening women’s participation in SSF management and decision-making. This review provides the first global quantitative assessment of women’s participation level in SSF management and associated socio-cultural, environmental, and economic impacts.<b>Data collection methods</b>To perform the literature review, we applied a topical search (in title, abstract, and keywords) in two databases: Web of Science (WoS) Core Collection and Scopus. We ran an initial search in June 2021 and updated it in June 2022. <b>Data analysis methods</b>Two coders read the publications and applied both qualitative and quantitative methods (descriptive and statistical analysis) to analyse the data.
DOI: 10.6084/m9.figshare.24213234.v1
title: Data for the Synthesis of Women’s Participation in Small-Scale Fisheries Management: Why Women’s Voices Matter

description: These data have been used to conduct a literature review documenting the impacts associated to strengthening women’s participation in SSF management and decision-making. This review provides the first global quantitative assessment of women’s participation level in SSF management and associated socio-cultural, environmental, and economic impacts.<b>Data collection methods</b>To perform the literature review, we applied a topical search (in title, abstract, and keywords) in two databases: Web of Science (WoS) Core Collection and Scopus. We ran an initial search in June 2021 and updated it in June 2022. <b>Data analysis methods</b>Two coders read the publications and applied both qualitative and quantitative methods (descriptive and statistical analysis) to analyse the data.
DOI: 10.5517/ccdc.csd.cc2dnhtd
title: CCDC 2224244: Experimental Crystal Structure Determination

description: Related Article: S. S. Degtyareva, D. A. Bardonov, K. A. Lysenko, M. E. Minyaev, I. E. Nifant’ev, D. M. Roitershtein|2023|Russ.J.Coord.Chem.|49|513|doi:10.1134/S107032842370063X
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dnhvf
title: CCDC 2224245: Experimental Crystal Structure Determination

description: Related Article: S. S. Degtyareva, D. A. Bardonov, K. A. Lysenko, M. E. Minyaev, I. E. Nifant’ev, D. M. Roitershtein|2023|Russ.J.Coord.Chem.|49|513|doi:10.1134/S107032842370063X
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f1hhh
title: CCDC 2235766: Experimental Crystal Structure Determination

description: Related Article: Manish Rana, Hungharla Hungyo, Palak Parashar, Shaban Ahmad, Rabiya Mehandi, Vibha Tandon, Khalid Raza, Mohammed A. Assiri, Tarik E. Ali, Zeinhom M. El-Bahy, Rahisuddin|2023|RSC Advances|13|26766|doi:10.1039/D3RA04873J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5519/qd.t9b5nh33
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (35306 records)