cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/bf8-hje-7b8
title: Bromus madritensis L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15156/bio/sh0013246.10fu
title: SH0013246.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0013247.10fu
title: SH0013247.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.3535/dw4-070-5wq
title: Bromus rubens L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.71531/ewctqe
title: Invertebrate occurrence data from the nature protection sector

description: The dataset contains both presence and absence occurrence records of invertebrates from Croatia, reported by various elements of the nature protection sector.
DOI: 10.15156/bio/sh0013248.10fu
title: SH0013248.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.ex5cpc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_1_GID","value":"VNM.60_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074700-251120083545085/datasets/export for details.
DOI: 10.25574/41827
title: Chandra X-ray Observatory ObsId 41827
DOI: 10.3535/j8c-a9k-h9k
title: Bromus rigidus Roth

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15156/bio/sh0013249.10fu
title: SH0013249.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.dc8kas
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Hong Kong",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Platevindex mortoni, Magallana hongkongensis)"
 ]
}

 The dataset includes 17 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074701-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0013250.10fu
title: SH0013250.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.sbp2fu
title: Occurrence Download

description: A dataset containing 1540 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Scyliorhinus canicula",
 "Year 1000-2025"
 ]
}

 The dataset includes 1540 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074702-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/dtj-g12-9lq
title: Hypericum maculatum Crantz

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15156/bio/sh0013251.10fu
title: SH0013251.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.3535/b0z-gzm-j1z
title: Hypericum maculatum Crantz

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15468/dl.kpddth
title: Occurrence Download

description: A dataset containing 3204758 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is USA.10_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 3204758 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074693-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/b3x-5q1-xkr
title: Hypericum maculatum Crantz

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15156/bio/sh0013252.10fu
title: SH0013252.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.xa73mh
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bassia prostrata",
 "Year 1970-2000"
 ]
}

 The dataset includes 140 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074703-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/1w7-gjv-f3z
title: Epilobium palustre L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15156/bio/sh0013253.10fu
title: SH0013253.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.3535/5vf-knw-an4
title: Hypericum montanum L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15468/dl.e5mk2z
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_1_GID","value":"VNM.63_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 28 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074704-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30447092
title: Padua monthly fog occurrence 1773-2025

description: Monthly fog occurrence observations collected in Padua, Italy, between 1773 and 2024 are reported.1773-1913_SPEC.csv contains monthly fog occurrence observed between January 1773 and December 1913 at the Specola Observatory;1917-1954_IDR.csv contains monthly fog occurrence observed between January 1917 and December 1954 at the Magrini Observatory of the "Ufficio Idrografico";1951-1984_AM.csv contains monthly fog occurrence observed between January 1951 and December 1984 at the airport by Air Force;1978-2025_PSN.csv contains monthly fog occurrence observed between January 1978 and December 2025 at Ponte san Nicolò (7 km south-east of Padua) by a local observer;2009-2025_MON.csv contains monthly fog occurrence observed between January 2009 and December 2025 by the visibilimeter of Montegalda managed by ARPAV.<br>
DOI: 10.15156/bio/sh0013254.10fu
title: SH0013254.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.r7kpvk
title: Occurrence Download

description: A dataset containing 93758 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "GadmGid is IDN.23_1",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Occurrence evidence)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 93758 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074663-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/xv9-2lx-m4a
title: Hypericum maculatum Crantz

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.6084/m9.figshare.30447092.v2
title: Padua monthly fog occurrence 1773-2025

description: Monthly fog occurrence observations collected in Padua, Italy, between 1773 and 2024 are reported.1773-1913_SPEC.csv contains monthly fog occurrence observed between January 1773 and December 1913 at the Specola Observatory;1917-1954_IDR.csv contains monthly fog occurrence observed between January 1917 and December 1954 at the Magrini Observatory of the "Ufficio Idrografico";1951-1984_AM.csv contains monthly fog occurrence observed between January 1951 and December 1984 at the airport by Air Force;1978-2025_PSN.csv contains monthly fog occurrence observed between January 1978 and December 2025 at Ponte san Nicolò (7 km south-east of Padua) by a local observer;2009-2025_MON.csv contains monthly fog occurrence observed between January 2009 and December 2025 by the visibilimeter of Montegalda managed by ARPAV.<br>
DOI: 10.15156/bio/sh0013255.10fu
title: SH0013255.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.18153343
title: GeoMx Human Whole Transcriptome Atlas profiling on at-risk MASH F3 patients

description: Integrated multi-omics identifies distinct macrophage alterations during progression of metabolic dysfunction-associated steatohepatitis

GeoMx Human Whole Transcriptome Atlas profiling (Bruker Spatial Biology) was performed on a cohort of eight Formalin-Fixed Paraffin-Embedded  biopsies from ‘at-risk’ MASH fibrosis stage F3 patients. Patients were classified as ‘at risk’ MASH if they have a MASH combined with a fibrosis stage of at least 2 and a MASLD Activity Score ≥4 (MAS; this is the sum of the histological scores for steatosis, hepatocyte ballooning and lobular inflammation). Regions were selected based on specific histopathological criteria and  fluorescent markers were employed to segment different macrophage (CD68), immune cell (CD45), and epithelial (Pan-keratin (panCK)) cell populations in a sequential manner. Whole Transcriptome Atlas RNA profiling was performed on a total of 80 segments. Information on regions of interest can be found in the annotation file and images. A minimum of 200 nucleated cells were recommended per region of interest to process for segmentation.
DOI: 10.5281/zenodo.18153344
title: GeoMx Human Whole Transcriptome Atlas profiling on at-risk MASH F3 patients

description: Integrated multi-omics identifies distinct macrophage alterations during progression of metabolic dysfunction-associated steatohepatitis

GeoMx Human Whole Transcriptome Atlas profiling (Bruker Spatial Biology) was performed on a cohort of eight Formalin-Fixed Paraffin-Embedded  biopsies from ‘at-risk’ MASH fibrosis stage F3 patients. Patients were classified as ‘at risk’ MASH if they have a MASH combined with a fibrosis stage of at least 2 and a MASLD Activity Score ≥4 (MAS; this is the sum of the histological scores for steatosis, hepatocyte ballooning and lobular inflammation). Regions were selected based on specific histopathological criteria and  fluorescent markers were employed to segment different macrophage (CD68), immune cell (CD45), and epithelial (Pan-keratin (panCK)) cell populations in a sequential manner. Whole Transcriptome Atlas RNA profiling was performed on a total of 80 segments. Information on regions of interest can be found in the annotation file and images. A minimum of 200 nucleated cells were recommended per region of interest to process for segmentation.
DOI: 10.3535/qzc-g9t-lx0
title: Impatiens noli-tangere L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15468/dl.qdks8j
title: Occurrence Download

description: A dataset containing 174284 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "GadmGid is IDN.22_1",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Occurrence evidence)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 174284 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074664-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.