DOI: 10.5281/zenodo.3351872
title: BCdatabaser - coi.araneae.AU.2019-07-26.zip

description: Parameters: --marker-search-string (COI OR CO1 OR 'Cytochrome oxidase 1' OR 'Cytochrome oxidase I') AND (AMMOXENIDAE[ORGN] OR PSECHRIDAE[ORGN] OR PHYSOGLENIDAE[ORGN] OR SYMPHYTOGNATHIDAE[ORGN] OR ARKYIDAE[ORGN] OR SICARIIDAE[ORGN] OR Holarchaeidae[ORGN] OR NESTICIDAE[ORGN] OR PERIEGOPIDAE[ORGN] OR GRADUNGULIDAE[ORGN] OR CITHAERONIDAE[ORGN] OR Huttoniidae[ORGN] OR MICROPHOLCOMMATIDAE[ORGN] OR OCHYROCERATIDAE[ORGN] OR MALKARIDAE[ORGN] OR SEGESTRIIDAE[ORGN] OR ARCHAEIDAE[ORGN] OR SALTICIDAE[ORGN] OR PRODIDOMIDAE[ORGN] OR OXYOPIDAE[ORGN] OR BARYCHELIDAE[ORGN] OR AMAUROBIIDAE[ORGN] OR OONOPIDAE[ORGN] OR AMPHINECTIDAE[ORGN] OR Synotaxidae[ORGN] OR Nephilidae[ORGN] OR CYATHOLIPIDAE[ORGN] OR ORSOLOBIDAE[ORGN] OR LIOCRANIDAE[ORGN] OR TROCHANTERIIDAE[ORGN] OR NICODAMIDAE[ORGN] OR CYCLOCTENIDAE[ORGN] OR ACTINOPODIDAE[ORGN] OR IDIOPIDAE[ORGN] OR SELENOPIDAE[ORGN] OR LYCOSIDAE[ORGN] OR SPARASSIDAE[ORGN] OR DEINOPIDAE[ORGN] OR THERAPHOSIDAE[ORGN] OR STIPHIDIIDAE[ORGN] OR MIGIDAE[ORGN] OR HAHNIIDAE[ORGN] OR SCYTODIDAE[ORGN] OR MYSMENIDAE[ORGN] OR Pararchaeidae[ORGN] OR CTENIZIDAE[ORGN] OR TETRABLEMMIDAE[ORGN] OR Zoridae[ORGN] OR FILISTATIDAE[ORGN] OR DYSDERIDAE[ORGN] OR PHRUROLITHIDAE[ORGN] OR CORINNIDAE[ORGN] OR THERIDIOSOMATIDAE[ORGN] OR PISAURIDAE[ORGN] OR ZOROPSIDAE[ORGN] OR ZODARIIDAE[ORGN] OR Mecysmaucheniidae[ORGN] OR AGELENIDAE[ORGN] OR AUSTROCHILIDAE[ORGN] OR HEXATHELIDAE[ORGN] OR MIMETIDAE[ORGN] OR ANYPHAENIDAE[ORGN] OR LAMPONIDAE[ORGN] OR THERIDIIDAE[ORGN] OR DIPLURIDAE[ORGN] OR GALLIENIELLIDAE[ORGN] OR NEMESIIDAE[ORGN] OR Tengellidae[ORGN] OR ULOBORIDAE[ORGN] OR MITURGIDAE[ORGN] OR HERSILIIDAE[ORGN] OR THOMISIDAE[ORGN] OR PHILODROMIDAE[ORGN] OR GNAPHOSIDAE[ORGN] OR CLUBIONIDAE[ORGN] OR PHOLCIDAE[ORGN] OR CYRTAUCHENIIDAE[ORGN] OR LINYPHIIDAE[ORGN] OR OECOBIIDAE[ORGN] OR CTENIDAE[ORGN] OR EUTICHURIDAE[ORGN] OR TETRAGNATHIDAE[ORGN] OR DICTYNIDAE[ORGN] OR ARANEIDAE[ORGN] OR ANAPIDAE[ORGN] OR DESIDAE[ORGN]) AND (animals[filter] AND biomol_genomic[PROP] AND ("200"[SLEN] : "2500"[SLEN])) NOT "sp."[All Fields] --taxonomic-range Araneae --sequence-length-filter 100:2000 --sequences-per-taxon 9
description: This dataset was automatically created with data from NCBI using the BCdatabaser tool
description: {"references": ["Keller et al. (2019) BCdatabaser: on-the-fly reference database creation for (meta-)barcoding. EcoEvoRxiv (2019); https://doi.org/10.32942/osf.io/cmfu2 - https://github.com/molbiodiv/bcdatabaser", "eutils: Sayers E. E-utilities Quick Start. 2008 Dec 12 [Updated 2018 Oct 24]. In: Entrez Programming Utilities Help [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2010-. Available from: https://www.ncbi.nlm.nih.gov/books/NBK25500/", "NCBI::Taxonomy: F\u00f6rster et al. https://github.com/greatfireball/NCBI-Taxonomy - F\u00f6rster F. greatfireball/NCBI-Taxonomy v0.90. Zenodo. 2018 Oct 15; https://doi.org/10.5281/zenodo.1462861", "SeqFilter: Hackl et al. https://github.com/BioInf-Wuerzburg/SeqFilter", "dispr: Cofield et al. https://github.com/douglasgscofield/dispr", "Krona: Ondov BD, Bergman NH, and Phillippy AM. Interactive metagenomic visualization in a Web browser. BMC Bioinformatics. 2011 Sep 30; 12(1):385."]}