DOI: 10.5281/zenodo.7740619
title: Assessment of acoustic indices for monitoring phylogenetic and temporal patterns of biodiversity in tropical forests

description: <b>Description: </b>Acostic recordings of bird calls at SAFE in 2014. Four solar-powered Wildlife Song Meter SM3 bioacoustic recorders (Wildlife Acoustics Inc., Concord,<br>MA, USA) were deployed with omni-directional microphones (sensitivity: 20Hz - 20kHz). No exact locations recorded.<b>Project: </b>This dataset was collected as part of the following SAFE research project: <b>Continuous bio-acoustic monitoring (2020 extension)</b><b>XML metadata: </b>GEMINI compliant metadata for this dataset is available here<b>Files: </b>This dataset consists of 2 files: Trigg_safedata.xlsx, CLIPS.zip<b>Trigg_safedata.xlsx</b>This file contains dataset metadata and 1 data tables:<b>Data</b> (described in worksheet Data)Description: excel sheet with clips listed and birds identifiedNumber of fields: 7Number of data rows: 837Fields: <b>FileNumber</b>: The audio files, which are labelled 1 to 120 (Field type: id)<b>StartTime</b>: approximate time when the species call began. (Field type: numeric)<b>EndTime</b>: approximate end time of the call. (Field type: numeric)<b>original_taxon_names</b>: species that can be heard in the recording. Original version as entered in to worksheet (Field type: comments)<b>Species</b>: species that can be heard in the recording. Corrected name, spelling mistakes and excess spaces removed etc. (Field type: taxa)<b>CallType</b>: Type of sound being identified (Field type: categorical)<b>IdCertainty</b>: Degree of certainty (Field type: categorical)<b>CLIPS.zip</b>Description: Zip file containing original audio clips used to generate these data<b>Date range: </b>2015-04-01 to 2015-06-30<b>Latitudinal extent: </b>4.6000 to 4.8000<b>Longitudinal extent: </b>117.5000 to 117.7000<b>Taxonomic coverage: </b><br> All taxon names are validated against the GBIF backbone taxonomy. If a dataset uses a synonym, the accepted usage is shown followed by the dataset usage in brackets. Taxa that cannot be validated, including new species and other unknown taxa, morphospecies, functional groups and taxonomic levels not used in the GBIF backbone are shown in square brackets. - Animalia <br> - - Chordata <br> - - - Mammalia <br> - - - - Primates <br> - - - - - Hylobatidae <br> - - - - - - <i>Hylobates</i> <br> - - - - - - - <i>Hylobates funereus</i> <br> - - - Aves <br> - - - - Galliformes <br> - - - - - Phasianidae <br> - - - - - - <i>Argusianus</i> <br> - - - - - - - <i>Argusianus argus</i> <br> - - - - Bucerotiformes <br> - - - - - Bucerotidae <br> - - - - - - <i>Anorrhinus</i> <br> - - - - - - - <i>Anorrhinus galeritus</i> <br> - - - - - - <i>Buceros</i> <br> - - - - - - - <i>Buceros rhinoceros</i> <br> - - - - - - <i>Rhinoplax</i> <br> - - - - - - - <i>Rhinoplax vigil</i> <br> - - - - Psittaciformes <br> - - - - - Psittacidae <br> - - - - - - <i>Loriculus</i> <br> - - - - - - - <i>Loriculus galgulus</i> <br> - - - - Passeriformes <br> - - - - - Cisticolidae <br> - - - - - - <i>Orthotomus</i> <br> - - - - - - - <i>Orthotomus ruficeps</i> <br> - - - - - - - <i>Orthotomus atrogularis</i> <br> - - - - - - - <i>Orthotomus sericeus</i> <br> - - - - - - <i>Prinia</i> <br> - - - - - - - <i>Prinia flaviventris</i> <br> - - - - - Chloropseidae <br> - - - - - - <i>Chloropsis</i> <br> - - - - - - - <i>Chloropsis cyanopogon</i> <br> - - - - - Aegithinidae <br> - - - - - - <i>Aegithina</i> <br> - - - - - - - <i>Aegithina viridissima</i> <br> - - - - - Pycnonotidae <br> - - - - - - <i>Pycnonotus</i> <br> - - - - - - - <i>Pycnonotus atriceps</i> <br> - - - - - - - <i>Pycnonotus simplex</i> <br> - - - - - - - <i>Pycnonotus erythropthalmos</i> <br> - - - - - - - <i>Pycnonotus goiavier</i> <br> - - - - - - <i>Alophoixus</i> <br> - - - - - - - <i>Alophoixus bres</i> <br> - - - - - - <i>Iole</i> <br> - - - - - - - <i>Iole olivacea</i> <br> - - - - - Dicaeidae <br> - - - - - - <i>Prionochilus</i> <br> - - - - - - - <i>Prionochilus xanthopygius</i> <br> - - - - - - <i>Dicaeum</i> <br> - - - - - - - <i>Dicaeum trigonostigma</i> <br> - - - - - Monarchidae <br> - - - - - - <i>Hypothymis</i> <br> - - - - - - - <i>Hypothymis azurea</i> <br> - - - - - - <i>Rhipidura</i> <br> - - - - - - - <i>Rhipidura javanica</i> <br> - - - - - Irenidae <br> - - - - - - <i>Irena</i> <br> - - - - - - - <i>Irena puella</i> <br> - - - - - Muscicapidae <br> - - - - - - <i>Trichixos</i> <br> - - - - - - - <i>Trichixos pyrropygus</i> <br> - - - - - Tephrodornithidae <br> - - - - - - <i>Hemipus</i> <br> - - - - - - - <i>Hemipus picatus</i> <br> - - - - - - - <i>Hemipus hirundinaceus</i> <br> - - - - - Pellorneidae <br> - - - - - - <i>Kenopia</i> <br> - - - - - - - <i>Kenopia striata</i> <br> - - - - - - <i>Pellorneum</i> <br> - - - - - - - <i>Pellorneum capistratum</i> <br> - - - - - - - <i>Pellorneum bicolor</i> <br> - - - - - - <i>Malacopteron</i> <br> - - - - - - - <i>Malacopteron affine</i> <br> - - - - - - <i>Malacocincla</i> <br> - - - - - - - <i>Malacocincla malaccensis</i> <br> - - - - - - <i>Alcippe</i> <br> - - - - - - - <i>Alcippe brunneicauda</i> <br> - - - - - Corvidae <br> - - - - - - <i>Corvus</i> <br> - - - - - - - <i>Corvus enca</i> <br> - - - - - Acanthizidae <br> - - - - - - <i>Gerygone</i> <br> - - - - - - - <i>Gerygone sulphurea</i> <br> - - - - - Timaliidae <br> - - - - - - <i>Cyanoderma</i> <br> - - - - - - - <i>Cyanoderma erythropterum</i> <br> - - - - - - - <i>Cyanoderma rufifrons</i> <br> - - - - - - <i>Mixornis</i> <br> - - - - - - - <i>Mixornis bornensis</i> <br> - - - - - - <i>Macronus</i> <br> - - - - - - - <i>Macronus ptilosus</i> <br> - - - - - - <i>Stachyris</i> <br> - - - - - - - <i>Stachyris maculata</i> <br> - - - - - - - <i>Stachyris poliocephala</i> <br> - - - - - - <i>Pomatorhinus</i> <br> - - - - - - - <i>Pomatorhinus montanus</i> <br> - - - - - Nectariniidae <br> - - - - - - <i>Anthreptes</i> <br> - - - - - - - <i>Anthreptes simplex</i> <br> - - - - - - <i>Arachnothera</i> <br> - - - - - - - <i>Arachnothera longirostra</i> <br> - - - - - - - <i>Arachnothera affinis</i> <br> - - - - - Eurylaimidae <br> - - - - - - <i>Eurylaimus</i> <br> - - - - - - - <i>Eurylaimus ochromalus</i> <br> - - - - Piciformes <br> - - - - - Ramphastidae <br> - - - - - - <i>Megalaima</i> <br> - - - - - - - <i>Megalaima australis</i> <br> - - - - - - - - <i>Megalaima australis duvaucelii</i> (as homotypic_synonym: <i>Psilopogon duvaucelii</i>)<br> - - - - - Picidae <br> - - - - - - <i>Meiglyptes</i> <br> - - - - - - - <i>Meiglyptes tukki</i> <br> - - - - - - <i>Dinopium</i> <br> - - - - - - - <i>Dinopium rafflesii</i> <br> - - - - - - <i>Blythipicus</i> <br> - - - - - - - <i>Blythipicus rubiginosus</i> <br> - - - - - - <i>Mulleripicus</i> <br> - - - - - - - <i>Mulleripicus pulverulentus</i> <br> - - - - Cuculiformes <br> - - - - - Cuculidae <br> - - - - - - <i>Cacomantis</i> <br> - - - - - - - <i>Cacomantis sonneratii</i> <br> - - - - - - - <i>Cacomantis merulinus</i> <br> - - - - - - <i>Rhinortha</i> <br> - - - - - - - <i>Rhinortha chlorophaea</i> <br> - - - - - - <i>Cuculus</i> <br> - - - - - - - <i>Cuculus vagans</i> <br> - - - - - - <i>Centropus</i> <br> - - - - - - - <i>Centropus sinensis</i> <br> - - - - Columbiformes <br> - - - - - Columbidae <br> - - - - - - <i>Chalcophaps</i> <br> - - - - - - - <i>Chalcophaps indica</i> <br>