cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3626711_d3.v1
title: MOESM2 of Significant geographical differences in prevalence of mutations associated with Plasmodium falciparum and Plasmodium 
                     vivax drug resistance in two regions from Papua New Guinea

description: Additional file 2: Table S2. Sequences of new LDR primers.
DOI: 10.6084/m9.figshare.c.3626726_d2.v1
title: Additional file 1: of High major histocompatibility complex class I polymorphism despite bottlenecks in wild and domesticated populations of the zebra finch (Taeniopygia guttata)

description: Sample name, origin and locus genotyped for each sample used in this study. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3626699_d7.v1
title: Additional file 2: of Conservation analysis of sequences flanking the testis-determining gene Sry in 17 mammalian species

description: Sry 5’ flanking sequences. Repeat-masked 10 kb sequences from 5’ ofSry. (TXT 149 kb)
DOI: 10.6084/m9.figshare.c.3626729_d2.v1
title: Additional file 2: of Body condition scoring of Bornean banteng in logged forests

description: Body Condition Score data file. (CSV 3Â kb)
DOI: 10.6084/m9.figshare.c.3626699_d8.v1
title: Additional file 3: of Conservation analysis of sequences flanking the testis-determining gene Sry in 17 mammalian species

description: Sry 3’ flanking sequences. Repeat-masked 10 kb sequences from 3’ of Sry. (TXT 146 kb)
DOI: 10.6084/m9.figshare.c.3626711_d4.v1
title: MOESM3 of Significant geographical differences in prevalence of mutations associated with Plasmodium falciparum and Plasmodium 
                     vivax drug resistance in two regions from Papua New Guinea

description: Additional file 3: Table S3. Pfdhfr, pfdhps, pfcrt and pfmdr1 genotypes prevalence in all P. falciparum infections.
DOI: 10.6084/m9.figshare.c.3626972_d2.v1
title: MOESM2 of Spatial patterns of genetic diversity, community composition and occurrence of native and non-native amphipods in naturally replicated tributary streams

description: Additional file 2. The complete microsatellite dataset, in which we give for each Gammarus fossarum genotyped a unique identification number (“sort_nr”), the position of the respective population (“position”; headwater h or outlet o), the population number (“pop”), a unique genotype number (“Individuum”), the stream name (“Bach”), and then all the microsatellite data values for the 10 microsatellite loci gf13, gf18, gf22, gf27, gf10, gf21, gf24, gf19 and gf28.
DOI: 10.6084/m9.figshare.c.3626939_d11.v1
title: MOESM16 of Setdb1-mediated H3K9 methylation is enriched on the inactive X and plays a role in its epigenetic silencing

description: Additional file 16. LTR repeats are deregulated upon Setdb1 depletion. Analysis of repeat class expression from RNA-seq in differentiating ES cells is shown. Analysis is split into reads mapping either to all chromosomes or specifically to the X chromosome at both days 3 and 5 of differentiation. The average fold-change between Setdb1 knockdown and Nons is indicated for each repeat, as is the average expression for that repeat. Chi squared calculations based on repeats with a log2 fold-change greater than 1 are given.
DOI: 10.6084/m9.figshare.c.3626987_d1.v1
title: Additional file 2: of Genome-wide target analysis of NEUROD2 provides new insights into regulation of cortical projection neuron migration and differentiation

description: In this file we provide the raw sequencing counts and number of peaks for each ChIP-Seq experiment with individual antibodies used in this study. (XLSX 7 kb)
DOI: 10.6084/m9.figshare.c.3626996_d1.v1
title: Additional file 1: of Transcriptomic analysis of the autophagy machinery in crustaceans

description: List of predicted Atg proteins identified in M. rosenbergii transcriptomes. The unigene identification number (ID), deduced amino acid sequence, and BLAST hit protein with lowest e-value of each predicted MroAtg are given. (XLSX 45Â kb)
DOI: 10.6084/m9.figshare.c.3626987_d2.v1
title: Additional file 7: of Genome-wide target analysis of NEUROD2 provides new insights into regulation of cortical projection neuron migration and differentiation

description: In this table we provide the NEUROD2 target genes that are differentially expressed in the SVZ-IZ region. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3626987_d3.v1
title: Additional file 6: of Genome-wide target analysis of NEUROD2 provides new insights into regulation of cortical projection neuron migration and differentiation

description: In this file we provide the list of most significantly represented pathways among NEUROD2 target genes (http://david.abcc.ncifcrf.gov/home.jsp). (XLSX 7 kb)
DOI: 10.6084/m9.figshare.c.3626939_d14.v1
title: MOESM4 of Setdb1-mediated H3K9 methylation is enriched on the inactive X and plays a role in its epigenetic silencing

description: Additional file 4. A retroviral shRNA library used to screen for genes involved in the maintenance of X inactivation. The genes targeted and the numbers of hairpins against each are shown. Dnmt1 [66,67] and Smchd1 [68] hairpins have been previously published.
DOI: 10.6084/m9.figshare.c.3626984_d5.v1
title: Additional file 2: Table S1. of Analysis of transcripts differentially expressed between fruited and deflowered ‘Gala’ adult trees: a contribution to biennial bearing understanding in apple

description: List of genes and primers used for real-time quantitative PCR analyses. Table S2. Genomic position of the genetic markers of the ‘Starkrimson’ x ‘Granny Smith’ apple genetic map [35]. Table S3. Genomic position of the QTL related to biennial bearing using the ‘Starkrimson’ x ‘Granny Smith’ apple genetic map [25, 35]. Table S4. Significance of the effect estimated by ANOVA for each apple gene studied by qRT‐PCR. Table S5. Significance of the difference of relative expression between apple trees inhibiting flowering (‘ON’) and trees initiating flowering (‘OFF’) for each studied gene and at each date. Table S6. Number of genes, mean and standard error per group of genes with a differential expression at least one time of the three sampled dates. Table S7. Gene ontology (GO) categorization of genes differentially expressed in apical buds of apple trees inhibiting flowering (‘ON’) or initiating flowering (‘OFF’) at day 131 (A), 151 (B) and 222 (C). Table S8. List of apple genes showing significant differential expression at day 131 (A), 151 (B) and 222 (C). Table S9. Genomic position of the genes expressed differentially in apple trees inhibiting flowering (‘ON’) and trees initiating flowering (‘OFF’) on the ‘Golden Delicious’ genome. Table S10. List of genes showing significant differential expression between apple trees inhibiting flowering (‘ON’) and trees initiating flowering (‘OFF’) at least one of the three dates of the experiment and located within QTL intervals for traits related to biennial bearing using the ‘Starkrimson’ x ‘Granny Smith’ genetic map [25, 35]. (XLS 1000 kb)
DOI: 10.6084/m9.figshare.c.3627182_d12.v1
title: Additional file 11: of Stringent comparative sequence analysis reveals SOX10 as a putative inhibitor of glial cell differentiation

description: SOX10 ChIP-seq peaks in the rat genome using HOMER analysis. The data are provided as a UCSC Rat Genome Browser (rn5) custom track. (TXT 1526 kb)
DOI: 10.6084/m9.figshare.c.3627245_d1.v1
title: Additional file 2: of Association of environmental markers with childhood type 1 diabetes mellitus revealed by a long questionnaire on early life exposures and lifestyle in a case–control study

description: The results of matched analysis and propensity analysis including questionnaire section, question description, labels used in figures, missing data separately for cases and controls, p-values, effect size ad confidence interval. (XLS 355 kb)
DOI: 10.6084/m9.figshare.c.3627182_d13.v1
title: Additional file 9: of Stringent comparative sequence analysis reveals SOX10 as a putative inhibitor of glial cell differentiation

description: Genomic coordinates and custom tracks (rn5; UCSC Rat Genome Browser) for SOX10 ChIP-seq peaks that map to both a DNase hypersensitivity site and at least one SOX10 monomeric consensus sequence that is conserved between human, mouse, and chicken. Columns are labeled in the file. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3627245_d2.v1
title: Additional file 4: of Association of environmental markers with childhood type 1 diabetes mellitus revealed by a long questionnaire on early life exposures and lifestyle in a case–control study

description: Results of the analysis described in Additional file 3. (XLS 12 kb)
DOI: 10.6084/m9.figshare.c.3627248_d3.v1
title: Additional file 5: Table S3. of Within-pair differences of DNA methylation levels between monozygotic twins are different between male and female pairs

description: Data supporting the findings in this study. (XLSX 6571 kb)
DOI: 10.6084/m9.figshare.c.3627242_d6.v1
title: MOESM9 of What evidence exists on the impact of governance type on the conservation effectiveness of forest protected areas? Knowledge base and evidence gaps

description: Additional file 9. Systematic map database.
DOI: 10.6084/m9.figshare.c.3627248_d4.v1
title: Additional file 2: Table S1. of Within-pair differences of DNA methylation levels between monozygotic twins are different between male and female pairs

description: Rank order within-pair differences in methylation levels (WPDMs) of CpG islands in older male and female pairs (in descending order). (XLSX 2065 kb)
DOI: 10.6084/m9.figshare.c.3627497_d4.v1
title: Additional file 4: of Changes in Bacillus anthracis CodY regulation under host-specific environmental factor deprived conditions

description: Dataset S4. Gene ontology analysis of differentially expressed genes in codY-deleted B. anthracis Sterne BCD22 in various deprived conditions (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3627506_d2.v1
title: Additional file 3 of Bioconductorâ  s EnrichmentBrowser: seamless navigation through combined results of set- & network-based enrichment analysis

description: EnrichmentBrowser output (TCGA RNA-seq data). Unzip and open the contained index.html in the browser to view the contents of this file (tested with Firefox 39.0). (ZIP 7116.8 kb)
DOI: 10.6084/m9.figshare.c.3627500_d3.v1
title: Additional file 2: Table S2. of Complete genome sequencing of Dehalococcoides sp. strain UCH007 using a differential reads picking method

description: Comparison of reductive dehalogenases of strain UCH007 with those of other strains. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3627497_d5.v1
title: Additional file 2: of Changes in Bacillus anthracis CodY regulation under host-specific environmental factor deprived conditions

description: Dataset S2. Differentially expressed genes of B. anthracis Sterne 34Â F2 in various deprived conditions. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3627506_d3.v1
title: Additional file 4 of Bioconductorâ  s EnrichmentBrowser: seamless navigation through combined results of set- & network-based enrichment analysis

description: GEO2KEGG target pathways. Unzip and open the contained index.html in the browser to view the contents of this file (tested with Firefox 39.0). ZIP 4597.76 kb
DOI: 10.6084/m9.figshare.c.3627497_d6.v1
title: Additional file 1: of Changes in Bacillus anthracis CodY regulation under host-specific environmental factor deprived conditions

description: Dataset S1. Comparison of differentially expressed genes between B. anthracis Sterne 34Â F2 and codY-deleted strain BCD22 in various deprived conditions. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.c.3627506_d4.v1
title: Additional file 2 of Bioconductorâ  s EnrichmentBrowser: seamless navigation through combined results of set- & network-based enrichment analysis

description: EnrichmentBrowser output (ALL microarray data). Unzip and open the contained index.html in the browser to view the contents of this file (tested with Firefox 39.0). (ZIP 2775 kb)
DOI: 10.6084/m9.figshare.c.3627527_d2.v1
title: Additional file 2 of Design of trials for interrupting the transmission of endemic pathogens

description: Documented R code for simulating trials analogous to the example given in the text. (R 676 kb)
DOI: 10.6084/m9.figshare.c.3627746_d1.v1
title: Additional file 1: of Compliance with birth dose of Hepatitis B vaccine in high endemic and hard to reach areas in the Colombian amazon: results from a vaccination survey

description: Study database containing Hepatitis B vaccination data from participants, Leticia, Puerto Nariño, Tarapacá; Amazon department, Colombia 2011–2012. (XLSX 256 kb)
DOI: 10.6084/m9.figshare.c.3627698_d10.v1
title: Additional file 7: of Transcriptomic responses of the basidiomycete yeast Sporobolomyces sp. to the mycotoxin patulin

description: Combined table of cuffdiff, Blast2GO and BLASTx outputs for upregulated Sporobolomyces sp. DEGs (FDR
DOI: 10.6084/m9.figshare.c.3627770_d1.v1
title: Additional file 7: Table S6. of Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315

description: Promoter motifs based on DMINDA [16] analysis. Motif sequences are shown in context with the expression pattern of the respective genes, based on microarray data [19]. (XLSX 319ย�kb)
DOI: 10.6084/m9.figshare.c.3627770_d2.v1
title: Additional file 5: Table S4. of Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315

description: Promoter motifs in sequences upstream of TSS based on Improbizer [13] analysis. The last nt of all sequences is position +1 of the transcript, the TSS. Motifs with scores &gt;2 were regarded as positive matches. Motif sequences are indicated in capital letters. (XLSX 436ย�kb)
DOI: 10.6084/m9.figshare.28049807
title: Convallaria majalis raw GC-MS files

description: Metabolite extraction from Convallaria majalis leaf
DOI: 10.6084/m9.figshare.c.3628046_d1.v1
title: Additional file 2: of Most of the tight positional conservation of transcription factor binding sites near the transcription start site reflects their co-localization within regulatory modules

description: Contains the intersection p-values diagrammed in Fig. 3. (XLSX 78 kb)
DOI: 10.6084/m9.figshare.28049807.v1
title: Convallaria majalis raw GC-MS files

description: Metabolite extraction from Convallaria majalis leaf
DOI: 10.6084/m9.figshare.c.3628064_d1.v1
title: Additional file 1: of What factors influence health professionals to use decision aids for Down syndrome prenatal screening?

description: Frequency of all influential factors reported by each category of health professional and overall. TDF Theoretical Domains Framework, #IF Influential factor number (see Tables 2 and 3), FP family physicians, MW midwives, OG obstetrician-gynecologists, Q Number of quotes for each influential factor , %QC Percentage of times that each influential factor was repeated per construct. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3628073_d1.v1
title: Additional file 1: of Integration of multi-omics data for prediction of phenotypic traits using random forest

description: List of the data sets used in this article. (XLSX 14739Â kb)
DOI: 10.6084/m9.figshare.c.3628088_d1.v1
title: Additional file 4: of Molecular profile of dissociative drug ketamine in relation to its rapid antidepressant action

description: The lists of probe IDs and gene names obtained in the comparison between tissues based on two-way ANOVA results (at p  0.3 at least at one of the time points). Transcripts regulated by drug treatment in the hippocampus or striatum specifically and a list of genes altered in both tissues are presented. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3628298_d2.v1
title: Additional file 2: of Rab32 and Rab38 genes in chordate pigmentation: an evolutionary perspective

description: Database of sequences used in phylogeny of Fig.Â  1 . (TXT 14 kb)
DOI: 10.6084/m9.figshare.c.3628250_d14.v1
title: Additional file 6: of Flowering time adaption in Swedish landrace pea (Pisum sativum L.)

description: Pearson correlation coefficients (including significances) between the measured traits, haplotypes and expression levels. Correlations with latitude and GSO are done with Swedish landraces only while the rest of the correlations include the whole data set. (XLS 21Â kb)
DOI: 10.6084/m9.figshare.c.3628289_d3.v1
title: Additional file 2: Figure S1a-c. of Differential impact of smoking on mortality and kidney transplantation among adult Men and Women undergoing dialysis

description: Age-specific mortality rates for Coronary disease, Peripheral Arterial Disease and Stroke for Men by smoking status. P–value for differences between smokers and non-smokers **P
DOI: 10.6084/m9.figshare.c.3628289_d4.v1
title: Additional file 3: Figure S2a-c. of Differential impact of smoking on mortality and kidney transplantation among adult Men and Women undergoing dialysis

description: Age-specific mortality rates for Coronary disease, Peripheral Arterial Disease and Stroke for Women by smoking status. P–value for differences between smokers and non-smokers **P
DOI: 10.6084/m9.figshare.c.3628289_d5.v1
title: Additional file 4: Figure S3a-c. of Differential impact of smoking on mortality and kidney transplantation among adult Men and Women undergoing dialysis

description: Age-specific transplantation rates for Coronary disease, Peripheral Arterial Disease and Stroke for Men by smoking status. P–value for differences between smokers and non-smokers **P
DOI: 10.6084/m9.figshare.c.3628307_d2.v1
title: Additional file 2 of Data integration to prioritize drugs using genomics and curated data

description: A spreadsheet file containing the list of studies. (XLS 15 kb)
DOI: 10.6084/m9.figshare.c.3628319_d1.v1
title: Additional file 1: of Whole genome sequencing reveals mycobacterial microevolution among concurrent isolates from sputum and blood in HIV infected TB patients

description: A tabular list of all SNPs and indels per M. tuberculosis isolate, sputum and blood, created using nesoni nway program. Key: Highlighted = SNPs between concurrent sputum and blood M. tuberculosis isolates, p = patient. (XLS 15043 kb)
DOI: 10.6084/m9.figshare.c.3628307_d3.v1
title: Additional file 3 of Data integration to prioritize drugs using genomics and curated data

description: A spreadsheet file containing the cancer-essentiality results for genes and processes. (XLS 10752 kb)
DOI: 10.6084/m9.figshare.c.3628316_d1.v1
title: Additional file 4: of Militarization, human rights violations and community responses as determinants of health in southeastern Myanmar: results of a cluster survey

description: Negotiation as a modifier of associations between exposure to armed groups and risk of any household member reporting human rights violations. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3628322_d1.v1
title: Additional file 3: of Characterization of the cytolethal distending toxin (typhoid toxin) in non-typhoidal Salmonella serovars

description: Salmonella genomes and sequences used for cdtB, pltA, and pltB analyses. Table in a Microsoft excel file listing the accession numbers of the genomes used for phylogenetic analysis.
DOI: 10.6084/m9.figshare.c.3628298_d7.v1
title: Additional file 4: of Rab32 and Rab38 genes in chordate pigmentation: an evolutionary perspective

description: Database of sequences used in phylogeny of Additional file 3 . (TXT 5 kb)
DOI: 10.6084/m9.figshare.c.3628316_d2.v1
title: Additional file 3: of Militarization, human rights violations and community responses as determinants of health in southeastern Myanmar: results of a cluster survey

description: Negotiation as a modifier of associations between exposure to armed groups and risk of poor health. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3628307_d4.v1
title: Additional file 4 of Data integration to prioritize drugs using genomics and curated data

description: A spreadsheet file containing the drug prioritization results. (XLS 275 kb)
DOI: 10.6084/m9.figshare.c.3628514_d2.v1
title: Additional file 5: Table S5. of Growth conditions that increase or decrease lifespan in Saccharomyces cerevisiae lead to corresponding decreases or increases in rates of interstitial deletions and non-reciprocal translocations

description: Characterization of 29 large-scale CAN1 mutation events in JC5516. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3628514_d3.v1
title: Additional file 2: Table S2. of Growth conditions that increase or decrease lifespan in Saccharomyces cerevisiae lead to corresponding decreases or increases in rates of interstitial deletions and non-reciprocal translocations

description: Mutation rates for individual trials in two strain backgrounds in media conditions that alter lifespan. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3628514_d4.v1
title: Additional file 3: Table S3. of Growth conditions that increase or decrease lifespan in Saccharomyces cerevisiae lead to corresponding decreases or increases in rates of interstitial deletions and non-reciprocal translocations

description: Fraction of canavanine-resistant derivatives in SCE218 that yielded a CAN1 PCR product. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3628514_d5.v1
title: Additional file 4: Table S4. of Growth conditions that increase or decrease lifespan in Saccharomyces cerevisiae lead to corresponding decreases or increases in rates of interstitial deletions and non-reciprocal translocations

description: Mutation rates for individual trials of JC5516 treated with MMS, acetic acid, HU, or in rad52â   mutants. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3628559_d1.v1
title: Additional file 6: of Transcriptome analysis of the fungal pathogen Fusarium oxysporum f. sp. medicaginis during colonisation of resistant and susceptible Medicago truncatula hosts identifies differential pathogenicity profiles and novel candidate effectors

description: Pfam domains more abundant in the in planta up-regulated DEG datasets. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3628754_d8.v1
title: Additional file 13: Table S3. of Variation in NAT2 acetylation phenotypes is associated with differences in food-producing subsistence modes and ecoregions in Africa

description: Predicted frequency of slow acetylators per population, with 95% non-parametric (bootstrap) confidence interval. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3628793_d1.v1
title: Additional file 2: Table S1. of Local and global patterns of admixture and population structure in Iranian native cattle

description: Number of samples, species, subspecies assignments, and geographical provenance of each population. With the exception of 8 Iranian native cattle breeds, sample descriptions are according to Decker et al. 2014 [10]. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3629069_d6.v1
title: Additional file 2: of Screening of whole genome sequences identified high-impact variants for stallion fertility

description: Whole genome sequences of horses filtered for high-impact variants in 11 horses. Type of mutation, single nucleotide polymorphism (SNPs) and Insertions/Deletions (Indels) and type of high-impact effect are given. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3629072_d4.v1
title: Additional file 4 of Developing ‘high impact’ guideline-based quality indicators for UK primary care: a multi-stage consensus process

description: Folder containing SystmOne™ search algorithms. (ZIP 12.7 mb)
DOI: 10.6084/m9.figshare.c.3629084_d2.v1
title: Additional file 6: of Simultaneous transcriptional profiling of Leishmania major and its murine macrophage host cell reveals insights into host-pathogen interactions

description: Differentially expressed gene lists for â  L. major â  parasite stages and timepoints using limma. (XLS 547Â kb)