cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.64d74
title: Data from: Habitat patterns in tropical rain forests: a comparison of 105 plots in northwest Borneo

description: Understanding the maintenance of high tropical tree species diversity
 requires disentangling the effects of habitat vs. geographic distance.
 Using floristic, topographic, and soil nutrient data from 105 0.6-ha plots
 in mixed dipterocarp forest throughout Sarawak, Malaysian Borneo, we
 explore the degree to which floristic patterns are habitat-driven from
 local to landscape scales. We assess how the floristic influence of
 geographic distance vs. abiotic factors varies from local to regional
 scales. We employ several multivariate analytical techniques and perform a
 hierarchical clustering of the research plots using the Steinhaus index of
 floristic dissimilarity, as well as Mantel analyses on matrices of
 floristic, habitat, and geographic distance. These analyses indicate that
 floristic variation is more strongly correlated with habitat than with
 geographic distance on the regional scale. On the local-landscape to
 community scale, we find evidence of a resource threshold above which
 habitat effects weaken; that is, below the resource threshold floristic
 similarity between sites is dominated by habitat effects, while above the
 threshold floristic similarity between sites is dominated by
 geographic-distance effects. We also find evidence that topography and
 soil nutrients correlate in part independently with floristics. These
 results, together with previous studies in the Neotropics, emphasize that
 tree species distribution and community composition are variously
 influenced by the interplay of both habitat and dispersal-driven effects.
description: Metadata
 fileA
 metadata file describing the contents of the data. There are six data
 files in total associated with this dataset. This metadata file provides
 background information on each data file, as well as a full description of
 the various fields included within the files.Site
 dataData describing the
 sites of plot samplingsarawak_sites.csvSoils dataData on soil chemistry, texture and colorsarawak_soils.csvSpecies dataA listing of species found within all plotssarawak_species.csvTopography dataData on site topographysarawak_topo.csvTrees dataData on height, girth, and buttress attributes of tree individualssarawak_trees.csvForest profile dataData of height, girth and height to first branch for construction of profile diagramssarawak_profiles.docxAll data filesA zip file including all six (sites, soils, species, topography, trees & profile) data files.mdfData.zip
DOI: 10.17632/jtz9g6rg6v
title: imu-gait-reliability-normative

description: Reproducible pipeline for IMU-based gait reliability analysis and normative reference values in healthy young adults.
DOI: 10.5061/dryad.8p33r
title: Data from: Prevalence and unmet need for diabetes care across the care continuum in a national sample of South African adults: evidence from the SANHANES-1, 2011-2012

description: South Africa faces an epidemic of chronic non-communicable diseases
 (NCDs), yet national surveillance is limited due to the lack of recent
 data. We used data from the first comprehensive national survey on
 NCDs—the South African National Health and Nutrition Examination Survey
 (SANHANES-1 (2011–2012))—to evaluate the prevalence of and health system
 response to diabetes through a diabetes care cascade. We defined diabetes
 as a Hemoglobin A1c equal to or above 6.5% or currently on treatment for
 diabetes. We constructed a diabetes care cascade by categorizing the
 population with diabetes into those who were unscreened, screened but
 undiagnosed, diagnosed but untreated, treated but uncontrolled, and
 treated and controlled. We then used multivariable logistic regression
 models to explore factors associated with diagnosed and undiagnosed
 diabetes. The age-standardized prevalence of diabetes in South Africans
 aged 15+ was 10.1%. Prevalence rates were higher among the non-white
 population and among women. Among individuals with diabetes, a total of
 45.4% were unscreened, 14.7% were screened but undiagnosed, 2.3% were
 diagnosed but untreated, 18.1% were treated but uncontrolled, and 19.4%
 were treated and controlled, suggesting that 80.6% of the diabetic
 population had unmet need for care. The diabetes care cascade revealed
 significant losses from lack of screening, between screening and
 diagnosis, and between treatment and control. These results point to
 significant unmet need for diabetes care in South Africa. Additionally,
 this analysis provides a benchmark for evaluating efforts to manage the
 rising burden of diabetes in South Africa.
description: Replication Data
 (CSV)Replication
 Data.csvReplication Data
 (Stata)Replication
 Data.dta
DOI: 10.17632/jtz9g6rg6v.1
title: imu-gait-reliability-normative

description: Reproducible pipeline for IMU-based gait reliability analysis and normative reference values in healthy young adults.
DOI: 10.17632/vz75j8dz7n
title: Beyond Stronger Antibiotics: Smarter Ecosystems for Infection Control

description: This research dataset summarizes the structural limitations of the antibiotic-centered paradigm in infection control—including antimicrobial resistance, recurrent infections, and microbiome disruption—and organizes an alternative framework based on microbiome ecosystem–based anti-infective strategies. Rather than pursuing ever “stronger” pathogen-killing drugs alone, the dataset shifts the focus toward designing and restoring the environment in which infections emerge, recur, and persist, incorporating host immunity, microbial balance, treatment history, and ecosystem resilience.
DOI: 10.17632/vz75j8dz7n.1
title: Beyond Stronger Antibiotics: Smarter Ecosystems for Infection Control

description: This research dataset summarizes the structural limitations of the antibiotic-centered paradigm in infection control—including antimicrobial resistance, recurrent infections, and microbiome disruption—and organizes an alternative framework based on microbiome ecosystem–based anti-infective strategies. Rather than pursuing ever “stronger” pathogen-killing drugs alone, the dataset shifts the focus toward designing and restoring the environment in which infections emerge, recur, and persist, incorporating host immunity, microbial balance, treatment history, and ecosystem resilience.
DOI: 10.17632/n27w2c3vtw
title: Oral Janus Kinase Inhibitors in Pediatric Vitiligo: A Real-World Retrospective Cohort Study

description: Supplementary Table 1 shows the treatment duration for disease progression control in different types of patients. Supplementary Table 2 shows the adverse reactions of the patients. Supplementary Figure 1 shows the percentage of improvement in facial VASI scores over treatment time for all patients. Supplementary Figure 2 shows the percentage of improvement in trunk VASI scores over treatment time for all patients. Supplementary Figures 3, 4, and 5 contain before-and-after treatment photos of some patients.
DOI: 10.17632/n27w2c3vtw.2
title: Oral Janus Kinase Inhibitors in Pediatric Vitiligo: A Real-World Retrospective Cohort Study

description: Supplementary Table 1 shows the treatment duration for disease progression control in different types of patients. Supplementary Table 2 shows the adverse reactions of the patients. Supplementary Figure 1 shows the percentage of improvement in facial VASI scores over treatment time for all patients. Supplementary Figure 2 shows the percentage of improvement in trunk VASI scores over treatment time for all patients. Supplementary Figures 3, 4, and 5 contain before-and-after treatment photos of some patients.
DOI: 10.5061/dryad.7j4t8
title: Data from: Synthesis and hydrogenation application of pt-pd bimetallic nanocatalysts stabilized by macrocycle-modified dendrimer

description: Different generations of poly(propylene imine) (Gn-PPI) terminated with
 N-containing 15-membered triolefinic macrocycle (GnM) (n = 2, 3, 4, 5) had
 been prepared. The bimetallic nanoparticles catalysts GnM-(Ptx/Pd10-x) (x
 = 0, 3, 5, 7, 10) were prepared by synchronous ligand-exchange reaction
 between GnM and the complexes of Pt(PPh3)4 and Pd(PPh3)4. The structure
 and catalytic propreties of GnM-(Ptx/Pd10-x) were characterized via FTIR,
 1H NMR, XRD, XPS, HRTEM, and EDS. The novel bimetallic Pd-Pt nanoparticles
 catalysts stabilized by dendrimers (DSNs) present higher catalytic
 activities for the hydrogenation of dimeric acid (DA) than that of nitrile
 butadiene-rubber (NBR), it can be concluded that bimetallic Pd-Pt DSNs
 possess alloying and synergistic electronic effects on account of the
 hydrogenation degree (HD) of DA and NBR. Furthermore HD of DA and NBR show
 a remarkable decrease with the incremental generations (n) of
 GnM-(Pt3/Pd7) (n = 2, 3, 4, 5).
description: X-Ray Powder Diffraction
 raw data for G2M-(Pt3/Pd7)The characteristic peaks
 for XRD of Pd(0), Pt(0), G4M and G2M-(Pt3/Pd7) .JZJ170303-2-G4M-PD7PT3.csvX-Ray Powder Diffraction raw data for G3M-(Pt3/Pd7)The characteristic peaks for XRD of Pd(0), Pt(0), G4M and GnM-(Pt3/Pd7)JZJ170524-7G3M-PD7PT3.csvX-Ray Powder Diffraction raw data for GnM-(Pt3/Pd7)JZJ170303-2-G4M-PD7PT3.csvX-Ray Powder Diffraction raw data for GnM-(Pt3/Pd7)JZJ170613-1-G5M-PD7PT3.csvX-Ray Powder Diffraction raw data for GnM-PdJZJ170303-1.csvX-Ray Powder Diffraction raw data for G4M-(Pt3/Pd7)JZJ170303-2-G4M-PD7PT3.csvX-Ray Powder Diffraction raw data for G4M-(Pt5/Pd5)JZJ170303-3.csvX-Ray Powder Diffraction raw data for G4M-(Pt7/Pd3)JZJ170303-4.csvX-Ray Powder Diffraction raw data for GnM-(Pt)JZJ170303-5.csvX-Ray Powder Diffraction raw data for G4MJZJ170303-6.csv
DOI: 10.5061/dryad.g335f
title: Data from: Expression profiling of human pluripotent stem cell-derived cardiomyocytes exposed to doxorubicin—integration and visualization of multi-omics data

description: Anthracyclines, such as doxorubicin, are highly efficient chemotherapeutic
 agents against a variety of cancers. However, anthracyclines are also
 among the most cardiotoxic therapeutic drugs presently on the market.
 Chemotherapeutic-induced cardiomyopathy is one of the leading causes of
 disease and mortality in cancer survivors. The exact mechanisms
 responsible for doxorubicin-induced cardiomyopathy are not completely
 known, but the fact that the cardiotoxicity is dose-dependent and that
 there is a variation in time-to-onset of toxicity, and gender- and age
 differences suggests that several mechanisms may be involved. In this
 study, we investigated doxorubicin-induced cardiotoxicity in human
 pluripotent stem cell-derived cardiomyocytes using proteomics. In
 addition, different sources of omics data (protein, mRNA, and microRNA)
 from the same experimental setup were further combined and analyzed using
 newly developed methods to identify differential expression in data of
 various origin and types. Subsequently, the results were integrated in
 order to generate a combined visualization of the findings. In our
 experimental model system, we exposed cardiomyocytes derived from human
 pluripotent stem cells to doxorubicin for up to 2 days, followed by a
 wash-out period of additionally 12 days. Besides an effect on the cell
 morphology and cardiomyocyte functionality, the data show a strong effect
 of doxorubicin on all molecular levels investigated. Differential
 expression patterns that show a linkage between the proteome,
 transcriptome, and the regulatory microRNA network, were identified. These
 findings help to increase the understanding of the mechanisms behind
 anthracycline-induced cardiotoxicity and suggest putative biomarkers for
 this condition.
description: Datasets for protein,
 mRNA, and microRNAThe file contains four
 datasets. Three with differentially expressed protein, mRNA, and microRNA,
 respectively. The last dataset contain data on all proteins detected in
 all TMT sets. Information about the sample names is included in the readme
 file.Datasets.xlsx
DOI: 10.5281/zenodo.18349424
title: Pine marten individual identification with citizen science

description: Data used in analysis in research into citizen science identification of pine martens on MammalWeb
DOI: 10.5281/zenodo.18349425
title: Pine marten individual identification with citizen science

description: Data used in analysis in research into citizen science identification of pine martens on MammalWeb
DOI: 10.5281/zenodo.18368632
title: Gaussian output data for neutral proton sponges

description: This dataset contains Gaussian output files (.log.gz) corresponding to quantum-chemical calculations performed on neutral proton sponge systems investigated in the published study: Phosphazenyl Phosphine Proton Sponges: Does the Proton-Chelating Effect Enhance Their Basicity?, Int. J. Mol. Sci. 2025, 26, 5058, DOI: 10.3390/ijms26115058.

The output files include the complete computational setup for each calculation, including the full route section, molecular input geometries, program version information, and all reported electronic and thermodynamic properties. Separate Gaussian input files are therefore not provided, as all necessary information to reconstruct each calculation is explicitly contained within the corresponding output file.

The dataset represents part 1 of a three-part collection, with files grouped according to logical subsets of the studied systems. The complete collection is distributed across three Zenodo records due to file number limitations.

The data are provided as raw computational outputs and are intended to support transparency, reproducibility, and reuse of the reported computational results.
DOI: 10.5281/zenodo.18368633
title: Gaussian output data for neutral proton sponges

description: This dataset contains Gaussian output files (.log.gz) corresponding to quantum-chemical calculations performed on neutral proton sponge systems investigated in the published study: Phosphazenyl Phosphine Proton Sponges: Does the Proton-Chelating Effect Enhance Their Basicity?, Int. J. Mol. Sci. 2025, 26, 5058, DOI: 10.3390/ijms26115058.

The output files include the complete computational setup for each calculation, including the full route section, molecular input geometries, program version information, and all reported electronic and thermodynamic properties. Separate Gaussian input files are therefore not provided, as all necessary information to reconstruct each calculation is explicitly contained within the corresponding output file.

The dataset represents part 1 of a three-part collection, with files grouped according to logical subsets of the studied systems. The complete collection is distributed across three Zenodo records due to file number limitations.

The data are provided as raw computational outputs and are intended to support transparency, reproducibility, and reuse of the reported computational results.
DOI: 10.17632/75ydfvw5nb
title: Summary of Magnesium Isotopes in Carbonates

description: Summary of Magnesium Isotopes in dolomite, limestone, and calcite and reference list.
DOI: 10.17632/75ydfvw5nb.1
title: Summary of Magnesium Isotopes in Carbonates

description: Summary of Magnesium Isotopes in dolomite, limestone, and calcite and reference list.
DOI: 10.5061/dryad.541q2
title: Data from: Zooplankton species diversity in the temporary wetland system of the Savannah River Site, South Carolina, USA

description: Understanding how diverse species communities develop and how the species
 within them coexist is one of the central questions in community ecology.
 The temporary wetland system occurring on the Savannah River Site near
 Aiken, South Carolina is home to the most species rich temporary wetland
 zooplankton assemblage known in the world. While previous research has
 documented this remarkable diversity, there has been little study directed
 at understanding how diversity is distributed at the landscape and local
 scales or on investigating potential mechanisms of what has led to the
 high richness of this system. The collection of studies presented here
 examine diversity patterns in the zooplankton community, links these
 patterns to spatial and temporal variation, experimentally tests the
 effects of two important environmental factors on diversity, and describes
 two new species. Results indicate that long hydroperiod lengths were
 associated with high species richness. Wetlands with similar species
 assemblages were generally closer together, suggesting the importance of
 dispersal. Over the course of a year, diversity increased during the
 spring and summer months and declined toward the fall, these changes were
 associated with low pH, low conductivity, and high water temperature.
 Vegetated areas within wetlands had greater diversity than did unvegetated
 areas, and diversity was particularly low in areas of decaying vegetation.
 Temporal comparisons provide evidence for distinct seasonal communities
 that arise every year. Experimental tests of the impact of hydroperiod
 length on diversity found that shorter hydroperiods resulted in reduced
 species richness, and communities dominated by just a few species.
 Predation was found to have no effect on diversity or community
 composition. During investigation of the diversity of these wetlands, two
 new species of the genus Chydorus were discovered and described. These two
 species differ from congeners both in morphology and phylogenetically.
 Together these studies describe how environmental variation can impact the
 diversity of the zooplankton communities within temporary wetlands and
 show how hydroperiod limits the richness of these systems. The results
 presented here provide insight into the forces that may lead to diverse
 communities in temporary wetlands, providing direction for future research
 into these dynamic ecosystems.
description: Zokan 2015 Savannah
 River Site Zooplankton DataThe data associated with
 Marcus Zokan's dissertation (2015) on zooplankton communities of
 ephemeral wetlands (Carolina Bays) at the Savannah River
 Site.
DOI: 10.5061/dryad.86634
title: Data from: Data management, archiving and sharing for biologists and the role of research institutions in the technology-oriented age

description: Data are one of the primary outputs of science. Although certain
 sub-disciplines of biology have pioneered efforts to ensure their
 long-term preservation and facilitate collaborations, data continue to
 disappear, owing mostly to technological, regulatory and ideological
 hurdles. In this review, we describe the important steps towards proper
 data management and archiving, and provide a critical discussion on the
 importance of long term data conservation. We then illustrate the rise in
 data archiving through the Joint Data Archiving Policy and the Dryad
 Digital Repository. In particular, we discuss data integration and how the
 limited availability of large scale datasets can hinder new discoveries.
 Finally, we propose solutions to increase the rate of data preservation.
 For example, by generating mechanisms insuring proper data management and
 archiving, by providing training in data management, and by transforming
 the traditional role of research institutions and libraries as data
 generators towards managers and archivers.
description: dryad_datasets_2010_2016_update_2017We downloaded the reference information for all packages published between 2010-2016 on datadryad.org. This information was retrieved in January-February 2017.webofscience_update_2017We gathered citation information from Thomson Reuters™ Web of Science Core Collection (http://apps.webofknowledge.com/) for a total of more than sixteen thousands scientific publications between the years 2010 and 2016 from the top ten journals submitting data to Dryad (Molecular Ecology, PLOS ONE, Evolution, Proceedings of the Royal Society B, Journal of Evolutionary Biology, The American Naturalist, Heredity, Molecular Ecology Resources, Biology Letters, Ecology and Evolution). From Web of Science online search page, we excluded reviews, perspectives, corrections, erratums and editorials. In addition, given the multidisciplinary nature of PLOS ONE and Proceedings of the Royal Society B, we limited searches for those two journals with the keywords “ecology”, “evolution” or “genetics”. For PLOS ONE (&gt;10k results), we only kept 3,000 random publications and accompanying citation records to keep the study design balanced. This amounted to a total of 16,771 references and their corresponding citation information that could be downloaded (per journal) that was exported in text format. This information was retrieved in January-February 2017.
DOI: 10.17632/9hjmd9n4f4.2
title: Environmental Regulation and Corporate Innovation: The roles of Managerial Sentiment, Regulatory Exposure, and Risk

description: Replication code for Environmental Regulation and Corporate Innovation: The Roles of Regulatory Exposure, Risk, and Sentiment.
DOI: 10.5061/dryad.01s00
title: Data from: Assessing the potential of genotyping-by-sequencing-derived single nucleotide polymorphisms to identify the geographic origins of intercepted gypsy moth (Lymantria dispar) specimens: a proof-of-concept study

description: Forest invasive alien species are a major threat to ecosystem stability
 and can have enormous economic and social impacts. For this reason,
 preventing the introduction of Asian gypsy moths (AGM; Lymantria dispar
 asiatica and L. d. japonica) into North America has been identified as a
 top priority by North American authorities. The AGM is an important
 defoliator of a wide variety of hardwood and coniferous trees, displaying
 a much broader host range and an enhanced dispersal ability relative to
 the already established European gypsy moth (L. d. dispar). Although
 molecular assays have been developed to help distinguish gypsy moth
 subspecies, these tools are not adequate for tracing the geographic
 origins of AGM samples intercepted on foreign vessels. Yet, this type of
 information would be very useful in characterizing introduction pathways
 and would help North American regulatory authorities in preventing
 introductions. The present proof-of-concept study assessed the potential
 of single nucleotide polymorphism (SNP) markers, obtained through
 genotyping-by-sequencing (GBS), to identify the geographic origins of
 gypsy moth samples. The approach was applied to eight laboratory-reared
 gypsy moth populations, whose original stocks came from locations
 distributed over the entire range of L. dispar, comprising representatives
 of the three recognized subspecies. The various analyses we performed
 showed strong differentiation among populations (Fst ≥ 0.237), enabling
 clear distinction of subspecies and geographic variants, while revealing
 introgression near the geographic boundaries between subspecies. This
 strong population structure resulted in 100% assignment success of moths
 to their original population when 2327 SNPs were used. Although the SNP
 panels we developed are not immediately applicable to contemporary,
 natural populations because of distorted allele frequencies in the
 laboratory-reared populations we used, our results attest to the potential
 of genome-wide SNP markers as a tool to identify the geographic origins of
 intercepted gypsy moth samples.
description: Picq_et_al_2017_raw_and_filtered_SNP_dataThe file contains all of the SNP data used in our article. The files named HapMap.fas.txt, HapMap.hmc.txt and HapMap.hmp.txt were obtained with the de novo UNEAK pipeline and respectively contains sequence of the SNP tag/read, the tag/read counts of each allele of the SNPs in each individual and eventually the genotypes. These files were obtained with the following default parameter settings: minimum tag count c = 5, error tolerance rate in the network filter e = 0.03 and minimum minor allele frequency mnMAF = 0.05. The last file named LymantriaD_Picq_et_al_80%_coverage_MafHeHw_LD_20170920.vcf present the 2327 SNPs obtained after the different SNP filtering steps (see Table 2 in our article). The 133 outlier SNPs are present in this file.