cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20579941.v2
title: Comparative transcriptomic analysis of rabbit interscapular brown adipose tissue whitening under physiological conditions

description: Interscapular brown adipose tissue (iBAT) of both rabbits and humans exhibits a similar whitening phenomenon under physiological conditions. However, a detailed characterization of iBAT whitening in them is still lacking. Here, we chose rabbits as a model to gain a better understanding of the molecular signature changes during the whitening process of iBAT by transcriptomic analysis of rabbit iBAT at day 1, day 14, 1 month and 4 months after birth. We applied non-invasive MRI imaging to monitor the whitening process and correlated these changes with analysis of morphological, histological and molecular features. Principal component analysis (PCA) of differentially expressed genes delineated three major phases for the whitening process as Brown, Transition and Whitened BAT phases. RNA-sequencing data revealed that whitening of iBAT was an orchestrated process where multiple types of cells and tissues participated in a variety of physiological processes including neovascularization, formation of new nervous networks and immune regulation. Several key metabolic and signalling pathways contributed to whitening of iBAT, and immune cells and immune regulation appeared to play an overarching role.
DOI: 10.6084/m9.figshare.20579941.v1
title: Comparative transcriptomic analysis of rabbit interscapular brown adipose tissue whitening under physiological conditions

description: Interscapular brown adipose tissue (iBAT) of both rabbits and humans exhibits a similar whitening phenomenon under physiological conditions. However, the detailed characterization of iBAT whitening in them is still lacking. Here, we chose rabbits as a model to gain a better understanding of the molecular signature changes during the whitening process of iBAT by transcriptomic analysis of rabbit iBAT at day 1, day 14, 1 month and 4 months after birth. We applied non-invasive MRI imaging to monitor the whitening process and correlated these changes with analysis on morphological, histological and molecular features. Principal component analysis (PCA) of differential expressed genes delineated three major phases for the whitening process as Brown, Transition and Whitened BAT phases. RNA-sequencing data revealed that whitening of iBAT was an orchestrated process where multiple types of cells and tissues participated in a variety of physiological processes including neovascularization, formation of new nervous networks and immune regulation. Several key metabolic and signaling pathways contributed to whitening of iBAT, and immune cells and immune regulation appeared to play an overarching role.
DOI: 10.25582/data.2023-01.2707508/2304952
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2706062/2304953
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.13889581
title: Supplementary Table 6.xlsx from Koala methylomes reveal divergent and conserved DNA methylation signatures of X chromosome regulation

description: Metadata on all putative X-linked koala scaffolds
DOI: 10.6084/m9.figshare.13889581.v1
title: Supplementary Table 6.xlsx from Koala methylomes reveal divergent and conserved DNA methylation signatures of X chromosome regulation

description: Metadata on all putative X-linked koala scaffolds
DOI: 10.25582/data.2023-01.2709012/2304954
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2710300/2304955
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2711244/2304956
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.19656773
title: Association of Genetic Polymorphisms of TERT with Telomere Length in Coke Oven Emissions-Exposed Workers

description: We explored the association between variations in the telomere maintenance genes and change in telomere length (TL) in workers. The TL of peripheral blood leukocytes from 544 coke oven workers and 238 controls were detected using the Real-time PCR method. Variations in four genes were then detected using the PCR based restriction fragment length polymorphism. The effects of environmental and genetic factors on TL were subsequently analyzed through covariance analysis and a generalized linear model .The TL of subjects with GG genotypes were longer than those with AG genotype in the <i>TERT</i> rs2736098 locus amongst the controls (<i>P</i> = .032). The combined effect of COEs exposure and AG+AA genotypes had a significant effect on TL (<i>P</i> &lt; .001). The interaction between the COEs exposure factor and the rs2736098AG+AA genotypes had a significant effect on the TL (<i>P</i> &lt; .05). The TL in coke oven workers is associated with the interactions between <i>TERT</i> rs2736098 AG+AA and COEs exposure.
DOI: 10.25582/data.2023-01.2710039/2304957
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.19656773.v1
title: Association of Genetic Polymorphisms of TERT with Telomere Length in Coke Oven Emissions-Exposed Workers

description: We explored the association between variations in the telomere maintenance genes and change in telomere length (TL) in workers. The TL of peripheral blood leukocytes from 544 coke oven workers and 238 controls were detected using the Real-time PCR method. Variations in four genes were then detected using the PCR based restriction fragment length polymorphism. The effects of environmental and genetic factors on TL were subsequently analyzed through covariance analysis and a generalized linear model .The TL of subjects with GG genotypes were longer than those with AG genotype in the <i>TERT</i> rs2736098 locus amongst the controls (<i>P</i> = .032). The combined effect of COEs exposure and AG+AA genotypes had a significant effect on TL (<i>P</i> &lt; .001). The interaction between the COEs exposure factor and the rs2736098AG+AA genotypes had a significant effect on the TL (<i>P</i> &lt; .05). The TL in coke oven workers is associated with the interactions between <i>TERT</i> rs2736098 AG+AA and COEs exposure.
DOI: 10.6084/m9.figshare.7598153
title: Additional file 9: of Genome-wide systematic characterization of bZIP transcription factors and their expression profiles during seed development and in response to salt stress in peanut

description: The Ka, Ks and Ka/Ks values for duplicated bZIP gene pairs in two Arachis genomes. (XLSX 14 kb)
DOI: 10.25582/data.2023-01.2711204/2304958
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.7598153.v1
title: Additional file 9: of Genome-wide systematic characterization of bZIP transcription factors and their expression profiles during seed development and in response to salt stress in peanut

description: The Ka, Ks and Ka/Ks values for duplicated bZIP gene pairs in two Arachis genomes. (XLSX 14 kb)
DOI: 10.25582/data.2023-02.2733263/2304959
title: Data for EMSL Project 51287 from February 2023
DOI: 10.25582/data.2023-01.2705583/2304960
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2708821/2304961
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2710252/2304962
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.13365343
title: Icephobicity studies of superhydrophobic coating on aluminium

description: Mechanically robust superhydrophobic (SHP) and icephobic performances are highly needed for an anti-icing surface in practical applications. Here, a SHP coating is prepared on the aluminium (Al) substrate using hydrothermal reaction and subsequent modification of hexadecyltrimethoxysilane, showing a water contact angle larger than 158° and a sliding angle (SA) less than 5°. This SHP coating displays a robust hydrophobic performance in acidic or alkaline solutions, after sand abrasion and consecutive icing/deicing cycles. It largely reduces ice adhesive strength and delays starting icing time on Al. Therefore, this work may shine some light in engineering aluminium-based materials to avoid ice accumulation.
DOI: 10.25582/data.2023-01.2709926/2304963
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.13365343.v2
title: Icephobicity studies of superhydrophobic coating on aluminium

description: Mechanically robust superhydrophobic (SHP) and icephobic performances are highly needed for an anti-icing surface in practical applications. Here, a SHP coating is prepared on the aluminium (Al) substrate using hydrothermal reaction and subsequent modification of hexadecyltrimethoxysilane, showing a water contact angle larger than 158° and a sliding angle (SA) less than 5°. This SHP coating displays a robust hydrophobic performance in acidic or alkaline solutions, after sand abrasion and consecutive icing/deicing cycles. It largely reduces ice adhesive strength and delays starting icing time on Al. Therefore, this work may shine some light in engineering aluminium-based materials to avoid ice accumulation.
DOI: 10.6084/m9.figshare.13365343.v1
title: Icephobicity studies of superhydrophobic coating on aluminium

description: Mechanically robust superhydrophobic (SHP) and icephobic performances are highly needed for an anti-icing surface in practical applications. Here, a SHP coating is prepared on the aluminium (Al) substrate using hydrothermal reaction and subsequent modification of hexadecyltrimethoxysilane, showing a water contact angle larger than 158° and a sliding angle (SA) less than 5°. This SHP coating displays a robust hydrophobic performance in acidic or alkaline solutions, after sand abrasion and consecutive icing/deicing cycles. It largely reduces ice adhesive strength and delays starting icing time on Al. Therefore, this work may shine some light in engineering aluminium-based materials to avoid ice accumulation.
DOI: 10.25582/data.2023-01.2710382/2304964
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2715938/2304965
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2710788/2304966
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-02.2732305/2304967
title: Data for EMSL Project 51287 from February 2023
DOI: 10.25582/data.2023-01.2710264/2304968
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2711134/2304969
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2714804/2304970
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2715567/2304971
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-02.2732774/2304972
title: Data for EMSL Project 51287 from February 2023
DOI: 10.25582/data.2023-01.2710724/2304973
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2710914/2304974
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25405/data.ncl.12841112
title: Supplementary materials for a protocol for quantifying patient preferences in neuromuscular disorders

description: The extended data includes: Team members listed, participant information sheets, consent forms and a list of attributes to be included in each Treatment Preference Methods.
DOI: 10.25405/data.ncl.12841112.v1
title: Supplementary materials for a protocol for quantifying patient preferences in neuromuscular disorders

description: The extended data includes: Team members listed, participant information sheets, consent forms and a list of attributes to be included in each Treatment Preference Methods.
DOI: 10.6084/m9.figshare.20705368
title: Additional file 2 of The bZIP transcription factor UvbZIP6 mediates fungal growth, stress response, and false smut formation in Ustilaginoidea virens

description: Additional file 2: Table S1. The primers used in this study. Table S2. Quality evaluation and statistical analysis of sample sequencing data. Table S3. List of up- or down-regulated genes in the UvbZIP6-knockout mutant.
DOI: 10.25582/data.2023-01.2705617/2304975
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.20705368.v1
title: Additional file 2 of The bZIP transcription factor UvbZIP6 mediates fungal growth, stress response, and false smut formation in Ustilaginoidea virens

description: Additional file 2: Table S1. The primers used in this study. Table S2. Quality evaluation and statistical analysis of sample sequencing data. Table S3. List of up- or down-regulated genes in the UvbZIP6-knockout mutant.
DOI: 10.25582/data.2023-01.2710927/2304976
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2710941/2304977
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2709773/2304978
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2709889/2304979
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2709412/2304980
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2709606/2304981
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2716629/2304982
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2710933/2304983
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2712159/2304984
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2712332/2304985
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2710563/2304986
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2707026/2304987
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-02.2733284/2304988
title: Data for EMSL Project 51287 from February 2023
DOI: 10.25582/data.2023-01.2706927/2304989
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2709971/2304990
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2705435/2304991
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2706533/2304992
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2707230/2304993
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.19656897
title: Additional file 4 of Gut microbiota-testis axis: FMT improves systemic and testicular micro-environment to increase semen quality in type 1 diabetes

description: Additional file 4: Data Set 2. Testicular metabolites raw data.
DOI: 10.6084/m9.figshare.19656897.v1
title: Additional file 4 of Gut microbiota-testis axis: FMT improves systemic and testicular micro-environment to increase semen quality in type 1 diabetes

description: Additional file 4: Data Set 2. Testicular metabolites raw data.
DOI: 10.25582/data.2023-01.2709870/2304994
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.7598327
title: Additional file 1: of p.E95K mutation in Indian hedgehog causing brachydactyly type A1 impairs IHH/Gli1 downstream transcriptional regulation

description: ChIP Primers. Primer sequences used for ChIP validation. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7598327.v1
title: Additional file 1: of p.E95K mutation in Indian hedgehog causing brachydactyly type A1 impairs IHH/Gli1 downstream transcriptional regulation

description: ChIP Primers. Primer sequences used for ChIP validation. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7598333
title: Additional file 2: of p.E95K mutation in Indian hedgehog causing brachydactyly type A1 impairs IHH/Gli1 downstream transcriptional regulation

description: Peak Calling of Gli1-binding sites. ChIP-chip peak calling. (XLS 66 kb)
DOI: 10.25582/data.2023-02.2733061/2304995
title: Data for EMSL Project 51287 from February 2023
DOI: 10.6084/m9.figshare.19656894
title: Additional file 3 of Gut microbiota-testis axis: FMT improves systemic and testicular micro-environment to increase semen quality in type 1 diabetes

description: Additional file 3: Data Set 1. Blood metabolites raw data.
DOI: 10.6084/m9.figshare.19656894.v1
title: Additional file 3 of Gut microbiota-testis axis: FMT improves systemic and testicular micro-environment to increase semen quality in type 1 diabetes

description: Additional file 3: Data Set 1. Blood metabolites raw data.
DOI: 10.6084/m9.figshare.7598333.v1
title: Additional file 2: of p.E95K mutation in Indian hedgehog causing brachydactyly type A1 impairs IHH/Gli1 downstream transcriptional regulation

description: Peak Calling of Gli1-binding sites. ChIP-chip peak calling. (XLS 66 kb)
DOI: 10.6084/m9.figshare.7598339
title: Additional file 3: of p.E95K mutation in Indian hedgehog causing brachydactyly type A1 impairs IHH/Gli1 downstream transcriptional regulation

description: Predicted Gli1 target genes. ChIP-chip predicted genes. (XLS 569 kb)
DOI: 10.6084/m9.figshare.7598339.v1
title: Additional file 3: of p.E95K mutation in Indian hedgehog causing brachydactyly type A1 impairs IHH/Gli1 downstream transcriptional regulation

description: Predicted Gli1 target genes. ChIP-chip predicted genes. (XLS 569 kb)
DOI: 10.25582/data.2023-01.2709705/2304996
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-02.2732329/2304997
title: Data for EMSL Project 51287 from February 2023
DOI: 10.6084/m9.figshare.7598348
title: Additional file 4: of p.E95K mutation in Indian hedgehog causing brachydactyly type A1 impairs IHH/Gli1 downstream transcriptional regulation

description: Gene Expression Profile. Differentially expressed genes between three groups. (XLS 2660 kb)
DOI: 10.6084/m9.figshare.7598348.v1
title: Additional file 4: of p.E95K mutation in Indian hedgehog causing brachydactyly type A1 impairs IHH/Gli1 downstream transcriptional regulation

description: Gene Expression Profile. Differentially expressed genes between three groups. (XLS 2660 kb)
DOI: 10.6084/m9.figshare.7598357
title: Additional file 5: of p.E95K mutation in Indian hedgehog causing brachydactyly type A1 impairs IHH/Gli1 downstream transcriptional regulation

description: Primers for Real Time PCR. Primers for gene expression validation. (XLSX 11 kb)
DOI: 10.25582/data.2023-01.2705741/2304998
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.7598357.v1
title: Additional file 5: of p.E95K mutation in Indian hedgehog causing brachydactyly type A1 impairs IHH/Gli1 downstream transcriptional regulation

description: Primers for Real Time PCR. Primers for gene expression validation. (XLSX 11 kb)
DOI: 10.25582/data.2023-01.2710165/2304999
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.7598363
title: Additional file 6: of p.E95K mutation in Indian hedgehog causing brachydactyly type A1 impairs IHH/Gli1 downstream transcriptional regulation

description: Matched Genes. matched genes between ChIP and DEGs. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7598363.v1
title: Additional file 6: of p.E95K mutation in Indian hedgehog causing brachydactyly type A1 impairs IHH/Gli1 downstream transcriptional regulation

description: Matched Genes. matched genes between ChIP and DEGs. (XLSX 9 kb)
DOI: 10.25582/data.2023-02.2732593/2305000
title: Data for EMSL Project 51287 from February 2023
DOI: 10.25582/data.2023-02.2732547/2305001
title: Data for EMSL Project 51287 from February 2023
DOI: 10.25582/data.2023-01.2705781/2305002
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2709217/2305003
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2710492/2305004
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2710502/2305005
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-02.2732813/2305006
title: Data for EMSL Project 51287 from February 2023
DOI: 10.25582/data.2023-01.2706066/2305007
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2712141/2305008
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2708924/2305009
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-02.2732635/2305010
title: Data for EMSL Project 51287 from February 2023
DOI: 10.6084/m9.figshare.22802837
title: Mapping Statistics

description: File “Mapping Statistics” provided the mapping statistics and circRNA numbers summarized for human and mouse bulk samples involved in GepLiver respectively in two sheets.
DOI: 10.25582/data.2023-02.2739832/2305011
title: Data for EMSL Project 51287 from February 2023
DOI: 10.6084/m9.figshare.22802837.v1
title: Mapping Statistics

description: File “Mapping Statistics” provided the mapping statistics and circRNA numbers summarized for human and mouse bulk samples involved in GepLiver respectively in two sheets.
DOI: 10.6084/m9.figshare.22802840
title: Cell Type Deconvolution for Human Bulk

description: File “Cell Type Deconvolution for Human Bulk” comprised deconvoluted cell fractions for human bulk samples involved in GepLiver based on feature matrix computed from integrated single cell data.
DOI: 10.6084/m9.figshare.22802840.v1
title: Cell Type Deconvolution for Human Bulk

description: File “Cell Type Deconvolution for Human Bulk” comprised deconvoluted cell fractions for human bulk samples involved in GepLiver based on feature matrix computed from integrated single cell data.
DOI: 10.6084/m9.figshare.22802843
title: Cell Annotations

description: File “Cell Annotations” supplied feature genes and suggested labels for cell types and subtypes of GepLiver single cell atlas.
DOI: 10.25582/data.2023-01.2709743/2305012
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.22802843.v1
title: Cell Annotations

description: File “Cell Annotations” supplied feature genes and suggested labels for cell types and subtypes of GepLiver single cell atlas.
DOI: 10.25582/data.2023-01.2710865/2305013
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.22802846
title: CytoTRACE scores

description: File “CytoTRACE scores” contained CytoTRACE scores calculated for total cells of GepLiver single cell atlas.
DOI: 10.6084/m9.figshare.22802846.v1
title: CytoTRACE scores

description: File “CytoTRACE scores” contained CytoTRACE scores calculated for total cells of GepLiver single cell atlas.
DOI: 10.25582/data.2023-01.2711073/2305014
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.22802849
title: Sample Descriptions

description: File “Sample Descriptions” served as sample descriptions of 70 datasets involved in GepLiver, containing characteristics of samples including species, sample type, sample size, cell number, liver phenotype, risk factor and mouse model.
DOI: 10.25582/data.2023-02.2732485/2305015
title: Data for EMSL Project 51287 from February 2023
DOI: 10.6084/m9.figshare.22802849.v1
title: Sample Descriptions

description: File “Sample Descriptions” served as sample descriptions of 70 datasets involved in GepLiver, containing characteristics of samples including species, sample type, sample size, cell number, liver phenotype, risk factor and mouse model.
DOI: 10.25582/data.2023-02.2733241/2305016
title: Data for EMSL Project 51287 from February 2023
DOI: 10.6084/m9.figshare.22802852
title: Single Cell Quality Control

description: File “Single Cell Quality Control” contained the statistics for quality control process of the integrated single cell atlas.
DOI: 10.6084/m9.figshare.22802852.v1
title: Single Cell Quality Control

description: File “Single Cell Quality Control” contained the statistics for quality control process of the integrated single cell atlas.
DOI: 10.25582/data.2023-01.2710832/2305017
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.22802855
title: Abundance of Cell Populations

description: File “Abundance of Cell Populations” comprised abundance analysis results for cell types and subtypes among individual liver phenotypes of integrated single cell atlas.
DOI: 10.6084/m9.figshare.22802855.v1
title: Abundance of Cell Populations

description: File “Abundance of Cell Populations” comprised abundance analysis results for cell types and subtypes among individual liver phenotypes of integrated single cell atlas.