cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dq3875
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galaxias Cuvier, 1816",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((17.8454 -33.8607,17.8905 -34.1504,17.9648 -34.1504,17.9648 -25.1504,14.3389 -25.1504,14.4725 -26.5137,15.1589 -28.0715,16.3623 -29.3594,16.8947 -30.6715,17.7447 -31.9232,17.8096 -32.2341,17.5192 -32.4186,17.3515 -32.9009,17.8454 -33.8607))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011767-250525065834625/datasets/export for details.
DOI: 10.15468/dl.jdat9m
title: Occurrence Download

description: A dataset containing 6916 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Picea A.Dietr."
 ]
}

 The dataset includes 6916 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011769-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y4wtxs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galaxias Cuvier, 1816",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((11.7957 -6.2886,12.3365 -7.1504,17.9648 -7.1504,17.9648 1.8496,9.1702 1.8496,8.9648 1.4824,8.9648 -2.2147,9.212 -2.6876,11.2887 -4.7775,11.6694 -5.4096,11.7957 -6.2886))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011770-250525065834625/datasets/export for details.
DOI: 10.15468/dl.97nvch
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galaxias Cuvier, 1816",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((11.2741 -15.6621,11.2727 -16.1504,17.9648 -16.1504,17.9648 -7.1504,12.3365 -7.1504,12.3429 -7.1607,12.8524 -8.4392,12.5237 -8.8791,12.5024 -9.17,13.3428 -11.0863,13.2132 -11.9643,12.6132 -12.4537,12.0505 -13.2857,11.7929 -14.5817,11.546 -15.3352,11.2741 -15.6621))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011772-250525065834625/datasets/export for details.
DOI: 10.15468/dl.j8r2da
title: Occurrence Download

description: A dataset containing 547 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Papilio polyctor Boisduval, 1836"
 ]
}

 The dataset includes 547 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011773-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.27aqu7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galaxias Cuvier, 1816",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.9449 -26.0614,44.9648 -26.0621,44.9648 -25.1504,43.6164 -25.1504,43.93 -25.627,44.5871 -25.7989,44.9449 -26.0614))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011774-250525065834625/datasets/export for details.
DOI: 10.15468/dl.scvtu5
title: Occurrence Download

description: A dataset containing 2626 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxypogon guerinii (Boissonneau, 1840)"
 ]
}

 The dataset includes 2626 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011775-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjf9mg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galaxias Cuvier, 1816",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.0031 -15.9691,43.978 -16.1504,44.9648 -16.1504,44.9648 -15.5455,44.7261 -15.708,44.2309 -15.7446,44.0031 -15.9691))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011777-250525065834625/datasets/export for details.
DOI: 10.15468/dl.yfsfg4
title: Occurrence Download

description: A dataset containing 24091 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Naso lituratus (Forster, 1801)"
 ]
}

 The dataset includes 24091 records from 149 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011778-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nudcb3
title: Occurrence Download

description: A dataset containing 85541 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Drosera L."
 ]
}

 The dataset includes 85541 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011768-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6kwsk
title: Occurrence Download

description: A dataset containing 24091 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Naso lituratus (Forster, 1801)"
 ]
}

 The dataset includes 24091 records from 149 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011779-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g66c27
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galaxias Cuvier, 1816",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.6841 -13.2744,44.9648 -13.45,44.9648 -12.0572,44.6243 -11.5921,43.9413 -11.6518,43.8001 -11.0974,43.4999 -10.8854,43.0582 -10.9337,42.804 -11.2068,42.7621 -11.9579,43.3325 -12.7962,44.5603 -12.8747,44.6841 -13.2744))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011781-250525065834625/datasets/export for details.
DOI: 10.15468/dl.58ybkq
title: Occurrence Download

description: A dataset containing 436825 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Clematis vitalba L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 436825 records from 2321 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011771-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7wh8ve
title: Occurrence Download

description: A dataset containing 55070 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Carex distans"
 ]
}

 The dataset includes 55070 records from 791 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049522-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.p8cz8w9sc
title: Proteomic analysis of serum markers in patients maintained on Antipsychotics

description: Background: Schizophrenia (SZ) and bipolar disorder (BD) share many
 features: overlap in mood and psychotic symptoms, common genetic
 predisposition, treatment with antipsychotics (APs), and similar metabolic
 comorbidities. The pathophysiology of both is still not well defined, and
 no biomarkers can be used clinically for diagnosis and management. This
 study aimed to assess the plasma proteomics profile of patients with SZ
 and BD maintained on APs compared to those who had been off APs for six
 months and to healthy controls (HCs). Methods: We analyzed the data using
 functional enrichment, random forest modeling to identify potential
 biomarkers, and multivariate regression for the associations with
 metabolic abnormalities. Results: We identified several proteins known to
 play roles in the differentiation of the nervous system like NTRK2, CNTN1,
 ROBO2, and PLXNC1, which were downregulated in AP-free SZ and BD patients
 but were “normalized” in those on APs. Other proteins (like NCAM1 and
 TNFRSF17) were “normal” in AP-free patients but downregulated in patients
 on APs, suggesting that these changes are related to medications’ effects.
 We found significant enrichment of proteins involved in neuronal
 plasticity, mainly in SZ patients on APs. Most of the proteins associated
 with metabolic abnormalities were more related to APs use than having SZ
 or BD. The biomarkers identification showed specific and sensitive results
 for schizophrenia, where two proteins (PRL and MRC2) produced adequate
 results. Conclusions: Our results confirmed the utility of blood samples
 to identify protein signatures and mechanisms involved in the
 pathophysiology and treatment of SZ and BD.
DOI: 10.5061/dryad.vx0k6djtr
title: Population differentiation and intraspecific genetic admixture in two Eucryptorrhynchus weevils (Coleoptera: Curculionidae) across northern China

description: Inreasing damage of pests in agriculture and forestry can arise both as a
 consequence of changes in local species and through the introduction of
 alien species. In this study, we used population genetics approaches to
 examine population processes of two pests of the tree-of-heaven trunk
 weevil (TTW), Eucryptorrhynchus brandti (Harold) and the tree-of-heaven
 root weevil (TRW), E. scrobiculatus (Motschulsky) on the tree-of-heaven
 across their native range of China. We analyzed the population genetics of
 the two weevils based on ten highly polymorphic microsatellite markers.
 Population genetic diversity analysis showed strong population
 differentiation among populations of each species, with FST ranges from
 0.0197 to 0.6650 and from -0.0724 to 0.6845, respectively. Populations
 from the same geographical areas can be divided into different genetic
 clusters, and the same genetic cluster contained populations from
 different geographical populations, pointing to dispersal of the weevils
 possibly being human-mediated. Redundancy analysis showed that the
 independent effects of environment and geography could account for 93.94%
 and 29.70% of the explained genetic variance in TTW, and 41.90% and 55.73%
 of the explained genetic variance in TRW, respectively, indicating
 possible impacts of local climates on population genetic differentiation.
 Our study helps to uncover population genetic processes of these local
 pest species with relevance to control methods.
description: We
 collected 13 TTW and 11 TRW populations across their native range of China
 (Table 1, Figure 1). The two weevils are the primary pests of the
 tree-of-heaven, and we sampled sites separated by variable distances
 (30-2100 km). To avoid the collection of siblings, one adult individual
 was collected from each tree. The samples were kept in 100% ethanol and
 stored at -80°C before DNA extraction. Total genomic DNA was extracted
 from the legs of each adult using the DNeasy Blood & Tissue Kit
 (Qiagen, Hilden, Germany) according to the manufacturer's
 instructions. Ten
 microsatellite loci from Zhang et al. (2021) were used in our study (Table S1) and genotyped
 using the same methods. The size of amplified PCR products was determined
 using an ABI 3730xl DNA Analyzer with GeneScan 500 LIZ size standard.
 Alleles were identified with GENEMAPPER v 4.0 (Applied Biosystems,
 USA).
description: Microsatellite data in genepop format for <em>Eucryptorrhynchus brandti</em>
 (Harold) (TTW) and <em>E.
 scrobiculatus</em>
 (Motschulsky) (TRW).<br>
DOI: 10.5061/dryad.k0p2ngfb3
title: Vocal babbling in a wild parrot shows life history and endocrine affinities with human infants

description: Vocal babbling is a critical phase in infant language development and is
 best understood in temperate songbirds where it occurs primarily in males
 at reproductive maturity and is modulated by sex steroids. Parrots of both
 sexes are famous vocal imitators but a vocal babbling stage has gone
 unnoticed and it is not clear how the endocrine system is involved.
  We report on vocal babbling in both sexes of nestling wild
 green-rumped parrotlets (Forpus passerinus) in Venezuela. In addition, we
 show that corticosterone supplements resulted in individuals with larger
 repertoires after treatment had ended. Results indicate parrotlets begin
 babbling during an earlier life history stage compared to most songbirds
 and one in which corticosteroids play an important role. Here we include
 audio files of bouts of babbling from a sample of audio-video recorded
 inside specially designed nest cavities and a data set of spectrographic
 measurements taken on each element within each bout of babbling as well as
 associated metadata.  
description: Audio-video recording and corticosterone experiments were
 conducted in 2017-2018 at Hato Masaguaral Research Station, State of
 Guarico, Venezuela. Audio spectrographic measurements were made in Raven
 1.5, Cornell Lab of Ornithology.
DOI: 10.5061/dryad.v41ns1rzk
title: Data from: Cascading effects of pre-adult survival on sexual selection

description: Sexual selection influences broad-scale patterns of biodiversity. While a
 large body of research has investigated the effect of mate competition on
 sexual selection, less work has examined how pre-adult life history
 influences sexual selection. We used a mathematical framework to explore
 the influence of pre-adult survival on sexual selection. Our model
 suggests that pre-adult male mortality will affect the strength of sexual
 selection when a fixed number of adult males have an advantageous
 mate-acquisition trait. When a fixed number of males have an advantageous
 mate-acquisition trait, sexual selection is expected to increase when
 pre-adult mortality is relatively low. In contrast, if a fixed proportion
 (rather than number) of adult males have a mate-acquisition trait,
 pre-adult male mortality is not expected to affect the strength of sexual
 selection. Further, if the advantageous mating trait affects pre-adult
 survival, natural and sexual selection can interact to influence the
 overall selection on the mating trait. Given that pre-adult mortality is
 often shaped by natural selection, our results highlight conditions under
 which natural selection can have cascading effects on sexual selection.
description: All data were collected using modeling as described in the text
 of the manuscript.
DOI: 10.5061/dryad.0p2ngf23t
title: A scoping review exploring vocational rehabilitation interventions for mental health service users with chronic mental illness in low-income to upper-middle-income countries

description: Objective To synthesize research published on vocational rehabilitation
 (VR) interventions offered in institutions, by occupational therapists, to
 mental health service users (MHSUs) with chronic mental illness, in
 low-income to upper middle-income countries (L-UMIC). Design This scoping
 review used Arksey and O’Malley’s methodological framework, the Preferred
 Reporting Items for Systematic Reviews extension for Scoping Reviews
 (PRISMA-ScR) and Joanna Briggs scoping review guidelines. Data Sources We
 searched PsycInfo, EBSCOhost, HINARI, Google scholar, Medline, CINAHL,
 PubMed, Cochrane Library, Scopus, Science Direct and Wiley online library
 between 15 July and 31 August 2021. Eligibility Criteria Sources,
 published in English between 2011 and 2021, on institution-based VR in
 occupational therapy for MHSUs who had chronic mental illness in L-UMIC
 were included. We included primary studies of any design. Data extraction
 and synthesis Three reviewers used Mendeley to manage identified
 references, Rayyan for abstract and full text screening, and Microsoft
 Excel for data extraction. Data was sifted and sorted by key categories
 and themes. Results 895 sources were identified, and their title and
 abstracts reviewed. 207 sources were included for full text screening. 12
 articles from 4 countries (South Africa, India, Brazil & Kenya)
 were finally included. Types of VR intervention included supported
 employment, case management and prevocational skills training. Client
 centeredness, support and empowerment were the key VR principles
 identified. Teaching of illness self-management, job analysis and
 matching, job coaching, trial placement, and vocational guidance and
 counseling, were the main intervention strategies reported. Conclusions VR
 intervention in institutions for MHSUs in L-UMIC revealed the
 multidimensional uniqueness of individual MHSU’s vocational ability, needs
 and contexts. The interventions allowed client-centered approaches that
 offer support, and empowerment beyond the boundaries of the institutions.
 Occupational therapists offering VR need to expand their interventions
 beyond their institutions to contexts where MHSUs are working or intending
 to work.
DOI: 10.5061/dryad.qfttdz0k4
title: Autoantibody discovery across monogenic, acquired, and COVID19-associated autoimmunity with scalable PhIP-Seq

description: Phage Immunoprecipitation-Sequencing (PhIP-Seq) allows for unbiased,
 proteome-wide autoantibody discovery across a variety of disease settings,
 with identification of disease-specific autoantigens providing new insight
 into previously poorly understood forms of immune dysregulation. Despite
 several successful implementations of PhIP-Seq for autoantigen discovery,
 including our previous work (Vazquez et al. 2020), current protocols are
 inherently difficult to scale to accommodate large cohorts of cases and
 importantly, healthy controls. Here, we develop and validate a high
 throughput extension of PhIP-seq in various etiologies of autoimmune and
 inflammatory diseases, including APS1, IPEX, RAG1/2 deficiency, Kawasaki
 Disease (KD), Multisystem Inflammatory Syndrome in Children (MIS-C), and
 finally, mild and severe forms of COVID-19. We demonstrate that these
 scaled datasets enable machine-learning approaches that result in robust
 prediction of disease status, as well as the ability to detect both known
 and novel autoantigens, such as PDYN in APS1 patients, and intestinally
 expressed proteins BEST4 and BTNL8 in IPEX patients. Remarkably, BEST4
 antibodies were also found in 2 patients with RAG1/2 deficiency, one of
 whom had very early onset IBD. Scaled PhIP-Seq examination of both MIS-C
 and KD demonstrated rare, overlapping antigens, including CGNL1, as well
 as several strongly enriched putative pneumonia-associated antigens in
 severe COVID-19, including the endosomal protein EEA1. Together, scaled
 PhIP-Seq provides a valuable tool for broadly assessing both rare and
 common autoantigen overlap between autoimmune diseases of varying origins
 and etiologies.
description: DNA libraries were barcoded and amplified, gel purified, and
 subjected to Next-Generation Sequencing on an Illumina NovaSeq Instrument
 (Illumina, San Diego, CA). Sequencing reads from raw fastq files
 (see: <strong>fastq</strong>
 <strong>files</strong>) were aligned to the reference library
 (see: <strong>reference.fasta</strong>) using
 RAPSearch2. Analyses are described in the linked
 manuscript. Briefly, for gene-level analysis, all peptide counts mapping
 to the same gene are summed. 0.5 reads are added to all genes, and raw
 reads are normalized by converting to percentage of total reads per sample
 (for peptide sequences and peptide-to-gene conversion, see:
 <strong>peptide_gene_mapping.csv</strong>). Fold change over
 mock-IP (FC) is calculated on a gene-by-gene basis by dividing sample read
 percentage by mean read percentage in corresponding AG bead-only samples.
 Z-scores are calculated using FC values; for each disease sample by using
 all corresponding healthy controls, and for each healthy control samples
 by using all other healthy controls. Sample information
 is available in the accompanying .csv files (see: <strong>metadata
 csv files</strong>).
DOI: 10.5061/dryad.mw6m905zq
title: Pico- and nanoplankton components along the estuarine gradient of the inner Gulf of Nicoya, Costa Rica

description: Phytoplankton and bacterioplankton represent the base of the aquatic food
 webs. The changes in the structure of their communities at different
 levels, from taxonomic and functional composition to single cells traits,
 and the degree of coupling among them has strong impact on transfer of
 energy to higher trophic levels and finally on the fate of organic matter.
 Changes in the structural pattern of the microbial community at different
 levels have been studied in temperate estuaries, but are poorly
 characterized in their tropical counterparts. Here, we show for the first
 time changes in single-cell characteristics and abundance and of key
 components of the planktonic microbial food web (picocyanobacteria,
 photoautotrophic pico- and nanoeukaryotes and heterotrophic bacteria)
 during the rainy and dry seasons along the estuarine gradient of the inner
 Gulf of Nicoya, one of the most productive estuaries in the world. The
 different responses of the microbial functional assemblages changed the
 structure of the pelagic microbial community, which likely affects higher
 trophic levels and the ecosystem functioning. Moreover, we relate the
 changes in the community structure to differences in environmental
 conditions along the estuary, during both seasons. Multivariate
 ordinations based on the microbial assemblages revealed a stronger
 covariation among them and with environmental variables during the dry
 season. The relative decrease in the inputs of allochthonous organic
 carbon and the increase in solar radiation during the dry season likely
 induced a higher degree of coupling between the low size phyto- and
 bacterioplankton assemblages along the tropical estuarine gradient due to
 increased local production.