cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.76bf0/1
title: MayaniFernando eggs

description: 1. Soiling. Descriptive data on characteristics, including degree of soiling, of 110 eggs of varying age (time since laying). 2. Depredation. Results of an experiment comparing predation by gulls on 184  soiled versus clean eggs. 3. Latency predation by gulls. For the 57 eggs that were predated in the experiment, these are the data, including latency to be depredated, on their characteristics. 4. Results of the same experiment comparing conspecific destruction of 145 soiled versus clean eggs. 5. Descriptive data on proportions of eggs that disappeared from the nest at each of 8 egg age intervals (time since laying).
DOI: 10.5061/dryad.7qc22/1
title: Full plastome matrix

description: This matrix contains full aligned plastomes for 31 bamboo species and two outgroup taxa (Pooideae, Ehrhartoideae).  Gapped positions have been removed along with one inverted repeat region.
DOI: 10.5061/dryad.846mh/1
title: Karve+_JEvolBiol_2015_Dryad_Data

description: Please refer to the Materials and Methods section of the associated paper for details.
DOI: 10.5061/dryad.8c2k5/1
title: FDR and food intake

description: FDR of temporarily caged and wild wheatears on Helgond island, Germany.
DOI: 10.5061/dryad.8h4v0/18
title: Ordination

description: R script for vegetation and soil ordinations and related figures
DOI: 10.5061/dryad.8j616/1
title: Whitehall_Forest_GNSS_study_2013-2014

description: This is the raw data collected by a F4Devices Flint GNSS receiver during two studies. The main goal was to determine whether the holding position during data collection would result in significantly different static horizontal position accuracy.
DOI: 10.5061/dryad.9mt2v/1
title: Murray et al Coyote 3-hour GPS locations March 14 2015

description: Spreadsheet containing GPS location data used in "Poor health is associated with use of anthropogenic resources in an urban carnivore". GPS fixes were collected from 19 coyotes every 3 hours. Description of column headings are found in the spreadsheet.
DOI: 10.5061/dryad.b3d34/1
title: Bouwhuis et al 2015 Evolution

description: Data used for models presented in Bouwhuis, S., Vedder, O. & Becker, P.H. “Sex-specific pathways of parental age effects on offspring lifetime reproductive success in a long-lived seabird”, Evolution
DOI: 10.5061/dryad.cv0q3/2
title: Data tables from MySQL database for gene expression analysis

description: separated data tables from MySQL database as zipped .csv files for the transcriptional, network connectedness, molecular evolution, and GO term analysis
DOI: 10.5061/dryad.cv0q3/3
title: data summary by gene

description: summary of data listed by M. pharaonis gene in comma deliminated (.csv) format. Header line with variables: gene is the M. pharaonis gene name; SINV homolog is the identified Solenopsis invicta homolog; SINVhomologexpression is whether the identified SINVhomolg was upregulated in workers that were in the nest vs. foraging area according to Manfredini et al. 2013; dNdS is the estimate of rate of molecular evolution; kTotal, kWithin, kOut, kDiff are the estimated of network connectedness from WGCNA; behavioral cateogry is whether the gene is upregulated in foragers, nurses, or not differentially expressed (nde); fpkm is the level of expression; evalue, hit, and species describe the best BLAST hit
DOI: 10.5061/dryad.cv0q3/4
title: raw behavioral scan data

description: table in .csv format of raw behavioral scan data showing each observation of age-marked individuals.Header line with variables: colony is whether the observation is from replicate colony b or c; date is the data of observation; age is the age of observed age-marked individual workers; behavior is the behavioral code, which is described in the Supplemental Table 1.csv
DOI: 10.5061/dryad.cv0q3/5
title: total behavioral counts by age class

description: table in csv format of total counts for each age cohort. Header column with variable: age is the age cohort of individuals observed; the remaining columns are the behavioral categories that significantly changed over the course of the study
DOI: 10.5061/dryad.cv0q3/6
title: README

description: README description of data files
DOI: 10.5061/dryad.dj827/1
title: boldness is linked with protective shell shape in aquatic snails

description: Individual boldness is linked with protective shell shape in aquatic snails
DOI: 10.5061/dryad.m0584.2
title: Data from: CLIP test: a new fast, simple and powerful method to distinguish between linked or pleiotropic quantitative trait loci in linkage disequilibria analysis
DOI: 10.5061/dryad.m0584.2/1.2
title: simulation program

description: script, fortran and R programs to perform the simulations
DOI: 10.5061/dryad.m0584.2/2.2
title: CLIP test

description: fortran program to perform the CLIP test
DOI: 10.5061/dryad.rt6h2/1
title: AgeEffectsVirulence

description: SPSS file with the host clone, parasite clone, exposure age, infection status, host offspring counts, time-from-exposure-to-castration, time-to-host-death-since-exposure and parasite spore production for each Daphnia that was used in the analyses.
DOI: 10.5061/dryad.s5v7b/2
title: Summary of results from coalescent simulations under and isolation model

description: This tab delimited file contains the parameters and summary output of coalescent simulations under an isolation model. All simulations were performed using MSMOVE (https://github.com/geneva/msmove).
DOI: 10.5061/dryad.s5v7b/3
title: Summary of results from coalescent simulations under a secondary contact model

description: This tab delimited file contains the parameters and summary output of coalescent simulations under a secondary contact model. See README for definitions of each column name. All simulations were performed using MSMOVE (https://github.com/geneva/msmove).
DOI: 10.5061/dryad.052jv/1
title: Tokuda et al. (raw data)
DOI: 10.5061/dryad.2q60r/11
title: Hunting Data

description: Hunting specfic questionnaire responses
DOI: 10.5061/dryad.2q60r/12
title: Hunting Data-Lifetime

description: Data collected from questionnaire responses on animals hunted in an individuals lifetime
DOI: 10.5061/dryad.2q60r/13
title: Consumption Data-Lifetime

description: Data collected from questionnaire responses on animal consumption over a participants lifetime.
DOI: 10.5061/dryad.3b568/10
title: Valid species numbers
DOI: 10.5061/dryad.3b568/4
title: Mean salinity environmental surface
DOI: 10.5061/dryad.3b568/5
title: Mean daily photosynthetically available radiation
DOI: 10.5061/dryad.3b568/6
title: Mean winter daily photosynthetically available radiation
DOI: 10.5061/dryad.3b568/7
title: Mean autumn daily photosynthetically available radiation
DOI: 10.5061/dryad.3b568/8
title: Mean summer daily photosynthetically available radiation
DOI: 10.5061/dryad.3b568/9
title: Mean spring daily photosynthetically available radiation
DOI: 10.5061/dryad.593n8/1
title: Common-garden experiment

description: Data from 937 common-garden reared juveniles (35 days old) including offspring from 64 parental crossings originating from three sympatric subpopulations. The following phenotypic traits are included: total length (mm), weight (g) and specific growth rate (mm/day).
DOI: 10.5061/dryad.593n8/2
title: Emigrating juveniles body size

description: Body size (total length, mm) data of 3517 field-sampled emigrating juveniles. Includes data from three different years and two subpopulations.
DOI: 10.5061/dryad.5jq6p/1
title: Dryad_data_2015

description: The folder contains .txt files of counts of divergent sites between D. arizonae and D. mojavensis in 250 and 500 bp blocks of intergenic sequence. These are the input files (readable with the Mathematica function ReadList[]) for fitting the IIM model using an analytic expression for the likelihood derived by Wilkinson-Herbots (2012). For details see Methods in Lohse et al (2015). Each block is summarized as a nested list {{S_div, S_het}, total length, pos}. The four entries are:S_div: 		Number of divergent sitesS_het: 		Number of heterozygous sites in both speciestotal length: 	Total physical length of the block in the Dmoj reference genome including sites that did not pass filtering. pos: 		Position on the scaffold (mean position of all called sites)Blocks containing heterozygous sites or a physical length &gt; 2x the number of called sites were not used in the analysis.
DOI: 10.5061/dryad.64732/2
title: S1

description: fMRI data for subject 1
DOI: 10.5061/dryad.64732/3
title: S2

description: fMRI data for subject 2
DOI: 10.5061/dryad.64732/4
title: S3

description: fMRI data for subject 3
DOI: 10.5061/dryad.64732/5
title: S4

description: fMRI data for subject 4
DOI: 10.5061/dryad.64732/6
title: S5

description: fMRI data for subject 5
DOI: 10.5061/dryad.64732/7
title: S6

description: fMRI data for subject 6
DOI: 10.5061/dryad.64732/8
title: S7

description: fMRI data for subject 7
DOI: 10.5061/dryad.64732/9
title: S8

description: fMRI data for subject 8
DOI: 10.5061/dryad.6q6sq/1
title: Shortnecks_starBEAST

description: xml file for the *BEAST analyses of the nuclear DNA
DOI: 10.5061/dryad.6q6sq/2
title: shortnecks_nuDNA

description: Nexus file of the concatenated nuclear loci
DOI: 10.5061/dryad.6v0gd/1
title: Tree species assemblages

description: Data on plots of tree &gt; 10 cm dbh
DOI: 10.5061/dryad.6v0gd/2
title: Phylogenetic tree-rooted

description: Species phylogeny for trees
DOI: 10.5061/dryad.705q4/3
title: dataset_geometric morphometric_raw coordinates

description: Dataset containing geometric morphometric raw coordinates and centroid size.
DOI: 10.5061/dryad.705q4/4
title: dataset_traditional morphometric

description: Dataset including all traditional morphometric measures and ratios used for methods 1-3. The four residuals were used for method 3. The length measures were obtained from two wing pictures of the same individual and therefore the averaged measures are shown in the dataset. Similarly for calculating the ratios averaged length and area measures (not included in the dataset) were taken from two wing pictures per individual. Because the measurement error was low we only took measurements from one wing picture for individuals from 2014.
DOI: 10.5061/dryad.m0584.1
title: Data from: CLIP test: a new fast, simple and powerful method to distinguish between linked or pleiotropic quantitative trait loci in linkage disequilibria analysis
DOI: 10.5061/dryad.qj007/10
title: AppendixFig1_phytohormones_data_screeningDC5

description: Data for Appendix Figure 1
DOI: 10.5061/dryad.qj007/11
title: AppendixFig2_TPS10_crosses_transcripts

description: Data for Appendix Figure 2
DOI: 10.5061/dryad.qj007/12
title: Fig1_AppendixFig3_glasshouse_field_data

description: Data for Figure 1 and Appendix Figure 3
DOI: 10.5061/dryad.qj007/13
title: Fig4_Manduca_sexta_glasshouse_assay

description: Data for Figure 4
DOI: 10.5061/dryad.qj007/14
title: Figs5_6_7_8_10_field_season2_screens

description: Data for figures 6-8, 10
DOI: 10.5061/dryad.qj007/9
title: Appendix1_Fig1_091208 Southern

description: Full original Southern blot image (includes lines not used in this publication).
DOI: 10.5061/dryad.3qk53/1
title: Microsatellite data for 14 loci and 14 Lithobates yavapaiensis sampling localities in Arizona, USA

description: Allelic genotypes are shown for each individual and microsatellite locus, with individuals grouped by sampling locality. Locality abbreviations are as follows: AS = Aliso Spring; AC = Aravaipa Canyon; CC = Cottonwood Canyon; CIC = Cienega Creek; HS = House Spring; HR = Hassayampa River; MRHS = Muleshoe Ranch, Hot Springs; MRSS = Muleshoe Ranch, Secret Spring; MRBC = Muleshoe Ranch, Bass Canyon; SM = Santa Maria River; SS = Seven Springs; TV = Tanque Verde Canyon; WC = Willow Creek; UH = Upper Hassayampa.
DOI: 10.5061/dryad.56b32/1
title: Whiteside et al Diet Data

description: Each sheet refers to a separate analysis performed in the associated paper. Analysis is identified in the worksheet tab name.
DOI: 10.5061/dryad.593n8/3
title: Growth trajectories

description: Data of reconstructed growth trajectories for 109 adults (≥ 4 years old) by using growth increment in cleithra bones. The file includes annual increment in the cleithra (mm) for each adult.
DOI: 10.5061/dryad.593n8/4
title: Size-at-age

description: Body size (length, cm) data from 95 adults of known age (3-6 years old) originating from three subpopulations.
DOI: 10.5061/dryad.593n8/5
title: Adult body size

description: Body size (total length, cm) data of 4097 adults. Individuals were sampled during spawning migration in five streams (subpopulaitions).
DOI: 10.5061/dryad.64732/10
title: S9

description: fMRI data for subject 9
DOI: 10.5061/dryad.64732/11
title: S10

description: fMRI data for subject 10
DOI: 10.5061/dryad.64732/12
title: S11

description: fMRI data for subject 11
DOI: 10.5061/dryad.64732/13
title: S12

description: fMRI data for subject 12
DOI: 10.5061/dryad.64732/14
title: S13

description: fMRI data subject 13
DOI: 10.5061/dryad.64732/15
title: S14

description: fMRI data subject 14
DOI: 10.5061/dryad.64732/17
title: S15

description: fMRI data subject 15
DOI: 10.5061/dryad.64732/18
title: S16

description: fMRI for subject 16
DOI: 10.5061/dryad.64732/19
title: S17

description: fMRI data subject 17
DOI: 10.5061/dryad.64732/20
title: S18

description: fMRI data subject 18
DOI: 10.5061/dryad.6m653/1
title: Bacon_Data_Extant

description: Data mined from phylogenies.
DOI: 10.5061/dryad.6m653/2
title: Bacon_Data_Fossil

description: Data mined from the Paleobiology Database.
DOI: 10.5061/dryad.6q6sq/3
title: Shortneck_COI

description: Nexus file of the COI mitochondrial DNA data.
DOI: 10.5061/dryad.6q6sq/4
title: FigureS4

description: Majority rule consensus of the posterior distribution of trees from Bayesian analysis of the AHR (panel A), AIING (B), BDNF (C), and BMP2 (D) loci generated under the HKY+I, K80+G, K80+I, and K80+I model of nucleotide sequence evolution, respectively. Bayesian posterior probabilities (BPP) as indicated. Myuchelys including M. purvisi was monophyletic with strong support (BPP = 1.0) at the AHR locus only. The outgroups were removed for clarity of presentation.
DOI: 10.5061/dryad.6q6sq/5
title: FigureS5

description: Majority rule consensus of the posterior distribution of trees from Bayesian analysis of the HMGB2 (panel A), HNFL (B), P26s4 (C) and PAX (D) loci generated under the HKY+I, HKY+I, HKY and HKY+G model of nucleotide sequence evolution, respectively. Bayesian posterior probabilities (BPP) as indicated. Myuchelys including M. purvisi was monophyletic with strong support (BPP = 1.0) at all four loci. The outgroups were removed for clarity of presentation.
DOI: 10.5061/dryad.6q6sq/6
title: FigureS6

description: Majority rule consensus of the posterior distribution of trees from Bayesian analysis of the R35 (panel A), RAG (B), TB01 (C) and TB73 (D) loci generated under the HKY, K80+I, K80+G, and HKY+G models of nucleotide sequence evolution, respectively. Bayesian posterior probabilities (BPP) as indicated. Myuchelys including M. purvisi was monophyletic with strong support (BPP = 1.0) at all four loci. The outgroups were removed for clarity of presentation.
DOI: 10.5061/dryad.6q6sq/7
title: FigureS7

description: Majority rule consensus of the posterior distribution of trees from Bayesian analysis of the ZFHX1B locus generated under the HKY+I model of nucleotide sequence evolution. Bayesian posterior probabilities (BPP) as indicated. Myuchelys including M. purvisi was monophyletic with strong support (BPP ≥0.95). The outgroups were removed for clarity of presentation.
DOI: 10.5061/dryad.6q6sq/8
title: Appendix S1

description: List of taxa, GenBank numbers and modified primer sequences used in this analysis
DOI: 10.5061/dryad.6v0gd/3
title: species functional trait matrix

description: Plant Functional Traits
DOI: 10.5061/dryad.6v0gd/4
title: Phylogenetic structure analysis

description: R-script for phylogenetic analyses
DOI: 10.5061/dryad.6v0gd/5
title: Trait and phylogenetic similarity

description: R-script for trait and phylogenetic similarity analysis
DOI: 10.5061/dryad.6v0gd/6
title: Trait dispersion analysis

description: R-script for functional trait dispersion analysis
DOI: 10.5061/dryad.8k55h/1
title: protozoa_data.tsv

description: This file contains a tab-delimited dataset of all protozoa morphospecies counts, as well as sample and treatment information.
DOI: 10.5061/dryad.8k55h/2
title: protozoa_enviro_data

description: This file contains a tab-delimited dataset of all environtmental data taken for all samples, including treatment and sampling identification information. This dataset can be merged with protozoa_data.tsv to reproduce the analyses in Petermann et al.
DOI: 10.5061/dryad.8k55h/3
title: protozoa_variables_explanation.rtf

description: This is a text document (rich text format) which contains metadata regarding all the variables in both .tsv files.
DOI: 10.5061/dryad.9mb54/1
title: Compressed folder: Cianfrocco_Leschziner_Dryad_Upload

description: This folder contains the necessary data files to extract particles, classify 3D data, and determine a 4.6 Angstrom cryo-EM structure of the 80S yeast ribosome. For a step-by-step guide, please read more here: http://git.io/8LrCqg.
DOI: 10.5061/dryad.bp62d/1
title: Host-parasite phylo signals data

description: This data is the prevalence data for ectoparasite species and genera (only genera represented by multiple species) recorded from bats of Paraguay and for ectoparasite, helminth, and coccidian species and genera (only genera represented by multiple species) recorded from rodents from the Sevilleta LTER site in the Southwestern United States.  This is the parasite data on which analyses of phylogenetic signals were based for the associated paper.  This and other associated data are available from the Sevilleta LTER web site as well as from the dissertation of SJ Presley (which can be downloaded for free from the electronic archives of the library of Texas Tech University.
DOI: 10.5061/dryad.g1q85/1
title: Arid_Recovery_APDP_soil_scats_map

description: QIIME mapping file
DOI: 10.5061/dryad.kr202/12
title: R0_micro

description: R code to calculate R0 for microparasites for mammals
DOI: 10.5061/dryad.kr202/13
title: R0_macro

description: R code to calculate R0 for macroparasites for mammals
DOI: 10.5061/dryad.kv1hd/1
title: HaplotypeList_Telma

description: Haplotype list detailing redundant sequences with the respective codes.
DOI: 10.5061/dryad.kv1hd/2
title: Telma_Arlequin

description: Input file for analyses with software Arlequin
DOI: 10.5061/dryad.kv1hd/3
title: Telma_migrate

description: Input file for analyses with Migrate-n
DOI: 10.5061/dryad.kv1hd/4
title: Full_Seq_Telma

description: Cytb sequences in fasta format. 148 sequences.
DOI: 10.5061/dryad.kv1hd/5
title: Coor_Geneland

description: Geographic coordinates for each Cytb sequence used in Geneland analyses.
DOI: 10.5061/dryad.p6678/1
title: body_condition

description: These data include buffalo that became infected with brucellosis during the course of the study.  We were interested in how host body condition scores differed before and after infection.  Additional covariates included in this analysis include, host age in years(age_in_years), season, the presence or absence of  a calf (calf), and host density (density_ave ) in the area it was captured.
DOI: 10.5061/dryad.qj007/15
title: Figs5_7_8_field_season1_screen_final

description: Data for figures 5, 7, 8
DOI: 10.5061/dryad.qj007/16
title: Figs7_8_9_field_season2_final

description: Data for figures 7-9
DOI: 10.5061/dryad.r8p5m/1
title: PinusTaiwanensis

description: This is the original data for each tree (treeid) in each study site (site id; B: bottom, L: low, M: medium, H:high, t: top) from 1960. The variables include: year (yr), basal area increment (BAI, mm2 yr-1), relative tree growth (RTG, % yr-1), tree age (ta, No. years), mean annual temperature (MAT, ºC), annual precipitation (PP, mm).
DOI: 10.5061/dryad.tc4n6/1
title: bird and arthropod predation rate

description: The bird and arthropod predation rates data on plasticine caterpillars was collected from 6 home gardens of each six agricultural landscapes of southwest Ethiopia. The data also includes the heterogeneity variation among home gardens and landscapes.
DOI: 10.5061/dryad.013hq/1
title: South Africa India 2005 2010 trials and approvals

description: This file has a list of Trials done from 1st January 2005 to 31st December 2010. It also lists the approvals received (NDA's) in India, South Africa, USA or EU.
DOI: 10.5061/dryad.1fj75/1
title: Triturus transcriptome-based gene models in FASTA format

description: Triturus transcriptome-based gene models in FASTA format
DOI: 10.5061/dryad.22c9s/1
title: Copes Rule Database

description: .csv file with database of phenotypic rates of change for traits
DOI: 10.5061/dryad.3q9k0/1
title: Snail morphological trait variation

description: Variation in shell morphology of Littoraria irrorata snails from Spartina alterniflora or Juncus roemerianus host plants
DOI: 10.5061/dryad.3q9k0/2
title: Snail stable isotope variation

description: Variation in C and N stable isotopes for Littoraria irrorata snails from Spartina alterniflora or Juncus roemerianus host plants
DOI: 10.5061/dryad.3q9k0/3
title: Snail feeding assay

description: Results of a lab feeding trial with Littoraria irrorata snails from Spartina alterniflora or Juncus roemerianus host plants feeding on plant-based agar
DOI: 10.5061/dryad.3q9k0/4
title: Susceptibility of live snails to predation

description: Results of laboratory trial testing the susceptibility of Littoraria irrorata snails from Spartina alterniflora or Juncus roemerianus host plants to predation by the crown conch Melongena corona
DOI: 10.5061/dryad.3q9k0/5
title: Susceptibility of dead snails to predation

description: Results of lab experiment testing susceptibility of dead Littoraria irrorata snails from Spartina alterniflora or Juncus roemerianus host plants to predation by the crown conch Melongena corona
DOI: 10.5061/dryad.3q9k0/6
title: Mesocosm experiment

description: Results of a mesocosm experiment testing the effects of snail type (Littoraria irrorata from Spartina alterniflora or Juncus roemerianus host plants), plant community (Spartina alterniflora only, Juncus roemerianus only, or Spartina and Juncus mix), and predator presence (Melongena corona) on plant density, height, and biomass
DOI: 10.5061/dryad.3s85r/1
title: inbreedingsPedigreeCrossLevel.csv

description: Pedigree of plants in experiment inb1. See readMe2015-05-05.txt
DOI: 10.5061/dryad.3s85r/2
title: inbreedingsHdInsectsDamage.csv

description: Insects and damage to heads and stems on plants in experiment inb1. See readMe2015-05-05.txt
DOI: 10.5061/dryad.49s82/1
title: Lemmermeyer_etal_AmNat_55522

description: Biomass sums and differences, sample sizes, and standard deviations, representing soil biota effects for 34 herbaceous plant species. Also included are relative growth rates, size-corrected growth rates, mean specific root length, and mean root C:N ratios per species, with respective sample sizes.
DOI: 10.5061/dryad.64732/21
title: S19

description: fMRI data subject 19
DOI: 10.5061/dryad.64732/22
title: S20

description: fMRI data subject 20
DOI: 10.5061/dryad.64732/23
title: S21

description: fMRI data subject 21
DOI: 10.5061/dryad.64732/24
title: S22

description: fMRI data subject 22
DOI: 10.5061/dryad.64732/25
title: S23

description: fMRI data subject 23
DOI: 10.5061/dryad.7vs0v/1
title: data MADOZ-RELACIONES

description: MS Excel file with two sheets, one for the 19th century Madoz Dictonary (MADOZ) and the other for the 16th century Relaciones Topográficas. Both sheets give the geographical position (in decimal degrees) of localities with information on freshwater fish included in the two historical sources. A "1" is given to localities citing the eel, while "0" is assigned to localities in which freshwater fish were identified by specific or genus-level names, but the eel was not cited
DOI: 10.5061/dryad.c7k5d/1
title: plant_data

description: Raw data files used for statistical analyses in this study.