cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/4xpff636jc.1
title: Spontaneous Regression of Cancer : Melanoma

description: The spontaneous cancer regression process, a well-documented paradoxical natural phenomenon, shows that malignant tumors can episodically undergo complete permanent elimination without treatment, and thus may be used for incisive therapeutic design innovations. This approach has high novelty as spontaneous regression process displays no toxicity or recurrence, as compared to customary therapy, and thus duplicating such regression process is highly desirable. Our aim was to probe this phenomenon using computational biomolecular dynamics analysis, with application to malignant melanoma as illustrative case-study, and thereby identify candidate molecules that may mimic the spontaneous regression process on the tumor. We investigated microarray preparations of melanoma, finding two reciprocal phases: spontaneous progression and spontaneous regression, and showed 17 driver genes for spontaneous regression of melanoma. We probed gene ontology, differentially-expressed genes and network pharmacoinformatics analysis. Thereby we targeted two main melanoma signaling pathways (MAPK, PI3K-AKT) which we blocked in the bioinformatics platform by inhibiting two melanoma oncogenes (BRAF, NRAS), thus arresting the melanoma progression phase, and activating the reverse phase, melanoma regression. Through molecular docking, we investigated the interactions between oncogenes vis-à-vis candidate molecules, identifying alpelisib and cetuximab as promising repurposable pharmacological candidates capable of efficiently inhibiting both oncogenes. Molecular dynamics simulations elucidated the stability and structural dynamics of protein-ligand complexes over requisite time-scale. Notably, alpelisib demonstrated stable binding with both BRAF and NRAS, maintaining proper protein folding, and cetuximab exhibited continuous stable hydrogen-bonding with both targets, as we found from protein-ligand modelling. Furthermore, binding energy calculations highlighted electrostatic and van der Waals interactions in stabilizing protein-ligand complexes. Specifically, alpelisib exhibited strong van der Waals and electrostatic interactions with NRAS, indicating significant therapeutic potency. Our findings underscore the high impact possibility for leveraging the anomalous phenomenon of spontaneous cancer regression and developing targeted therapeutic interventions, with substantial clinical oncological potentials.
DOI: 10.17632/tkkh3styfy.1
title: Summary of ocular adeno-associated virus (AAV) gene therapy studies

description: Gene therapy using adeno-associated virus (AAV) as a vector represents a novel therapeutic modality to treat ocular diseases by transferring engineered genetic material into target cells for the purpose of preventing, halting or reversing pathological processes.

Despite the enormous advantages of AAV-based gene therapy, there are still concerns about long-term efficacy and safety issues. Given the rising of this groundbreaking approach, we summarized a dataset of ocular AAV gene therapy studies (trials/publications).

Data source: ClinicalTrials.gov, Embase and PubMed.

Search strategy: Strategies are provided in the folder " Extraction process".

Data dictionary: Unifying each variable, a normalized list of data items is provided in the folder " Extraction process".

A trial was eligible for inclusion if the following criteria was met: (1) the study focused on patients with ocular diseases who received rAAV-based gene therapy; for publications, additional criteria were (2) study eyes for treatment are unilateral; (3) there was a clearly disclosed drug information and route of administration (ROA); and (4) the article reported the safety outcomes following gene therapy. If results from one trial were reported in several publications, data included in the ‘Dataset of ocular AAV gene therapy clinical studies.xlsx’ were extracted from the publication that was considered the most appropriate to avoid using duplicate data. If a trial consisted of several phases and was reported separately in the publication, we included the publication from different phases separately. For trial with multiple publications, we list our reason for selection in the folder " Extraction process".

For each study, extracted data included: (1) study characteristics (condition, age, sex, start date, region, phase, status, funder type, study design and enrollment); (2) interventions (study eye, dose, ROA, drug information, and prophylactic immunosuppression regimen); and (3) details of adverse event (AE) and/or a specific safety outcome and/or immune response.
DOI: 10.15468/dl.62sfxu
title: Occurrence Download

description: A dataset containing 128132 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-23.81155 45.91704,7.96608 46.25383,7.96608 62.38568,-23.70346 62.23051,-23.81155 45.91704))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Uria aalge (Pontoppidan, 1763)",
 "Year 2015-2025"
 ]
}

 The dataset includes 128132 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003403-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.etade8
title: Occurrence Download

description: A dataset containing 53844 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is New Zealand Garden Bird Survey 2022"
 ]
}

 The dataset includes 53844 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003461-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/wy4bxtjxxd.1
title: A dataset on Fruit Fertilizer application for Sweet Orange production

description: This dataset represents the raw data collected during the study carried out in Benin, West Africa.
The research spanned eight months using a split-plot design with four replications and 15 treatments, including a control. Treatments included doses and application frequencies of NPKUrea, Poultry litter, and Fruit Fertilizer. A total of 300 trees were considered. The trees were 10-14 years old. Each Fruit Fertilizer dose was applied over 10 trees using a MAC AFRIC pressure sprayer. Recommended doses of NPKUrea fertilizer and poultry litter were applied per tree.
Soil texture and nutrient concentration were analyzed from soil samples collected from each experimental site. The canopy density of the sweet orange trees was determined as described by Livingston et al. (2023). Fully developed fruits were harvested and weighed for yield in kilograms per tree. 

In the "dataset" spreadsheet; Canopy.density1 = "canopy density pre-treatment", Canopy.density2 = "canopy density post-treatment".

The "treatments" spreadsheet provides details on fertilizers, doses and application schedule.
DOI: 10.15468/dl.v94wcs
title: Occurrence Download

description: A dataset containing 27263 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rumex alpinus L.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 27263 records from 242 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003464-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b4pse4
title: Occurrence Download

description: A dataset containing 6319587 species occurrences available in GBIF matching the query:
(Query is too complex. Can be viewed on the landing page)

 The dataset includes 6319587 records from 1683 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003446-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29434397
title: Artículo T. Mann

description: manuscrito Y CARTAS
DOI: 10.6084/m9.figshare.29434397.v1
title: Artículo T. Mann

description: manuscrito Y CARTAS
DOI: 10.5281/zenodo.15747449
title: RRFS with MGBF-based localization: ICs for EnKF (mem001-015)

description: Initial conditions for EnKF (2022092915, mem001-015)
DOI: 10.5281/zenodo.15747450
title: RRFS with MGBF-based localization: ICs for EnKF (mem001-015)

description: Initial conditions for EnKF (2022092915, mem001-015)
DOI: 10.5281/zenodo.15770610
title: Dataset 2 for "Magnetic mineral assemblages of diagenetically reduced sediments and their contributions to paleomagnetic signals"

description: One of two Datasets for "Magnetic mineral assemblages of diagenetically reduced sediments and their contributions to paleomagnetic signals" by Li Jiaxi et al. submitted to Journal of Geophysical Research - Solid Earth.
DOI: 10.15468/dl.c85rtj
title: Occurrence Download

description: A dataset containing 274116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trollius L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 274116 records from 807 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079294-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6mqesx
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senecio vulgaris L.",
 "Country is Uruguay",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079313-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15770612
title: The PFAS standards of the std_150 dataset provided by the National Environmental Research Academy, Ministry of Environment in Taiwan.

description: The PFAS standards of the std_150 dataset the National Environmental Research Academy, Ministry of Environment in Taiwan.
DOI: 10.15468/dl.v3zt53
title: Occurrence Download

description: A dataset containing 4840 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senecio vulgaris L.",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4840 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079310-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4pwc85
title: Occurrence Download

description: A dataset containing 17374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senecio vulgaris L.",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17374 records from 149 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079312-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15747476
title: RRFS with MGBF-based localization: ICs for EnKF (mem016-030)

description: Initial conditions for EnKF (2022092915, mem016-030)
DOI: 10.5281/zenodo.15747477
title: RRFS with MGBF-based localization: ICs for EnKF (mem016-030)

description: Initial conditions for EnKF (2022092915, mem016-030)
DOI: 10.21227/fc2h-b926
title: "FireRisk-Multi: A Dynamic Multimodal Fusion Framework with Geographic Feature-Driven Weighting for High-Precision Wildfire Risk "

description: "This study presents an integrated wildfire risk assessment framework combining multi-source geospatial data (NAIP imagery, SRTM topography, ERA5 meteorology, and MODIS NDVI) with machine learning. Our methodology features a novel weighted fusion approach for risk modeling, validated across 49 US regions. The system achieves 87% prediction accuracy with SHAP-interpretable feature importance, offering actionable insights for land management and emergency planning."
DOI: 10.5281/zenodo.15770585
title: TROPOMI NO2/CO vs HWP, Interpolated HRRR-Chem Flight Tracks and Curtains, and DC-8 Data with Altitude Adjustment

description: Data Used in HRRR-Chem Figures. Note: DC-8 Data with Bias_Correction in the name has an altitude adjustment described in Anderson et al., 2025 (increase of 1.02 km on Aug. 3 and 1.12 km on Aug. 7). For the official DC-8 Data see the FIREX-AQ data archive at https://www-air.larc.nasa.gov/cgi-bin/ArcView/firexaq?MERGE=1#01_SECOND.DC8_MRG/
DOI: 10.15468/dl.5ypu25
title: Occurrence Download

description: A dataset containing 1700 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Latoia Guérin-Méneville, 1844"
 ]
}

 The dataset includes 1700 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079317-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/2cb2-b854
title: "SensorBench: Benchmarking LLMs in Coding-Based Sensor Processing"

description: "Effective sensor data processing is critical for cyber-physical and IoT systems but often requires specialized expertise. While Large Language Models (LLMs) and Large Reasoning Models (LRMs) show promise as autonomous copilots for sensor processing, their capabilities remain underexplored. We introduce SensorBench, the first comprehensive benchmark for evaluating LLMs across diverse real-world sensor datasets and tasks. SensorBench evaluates three paradigms for leveraging LLMs in sensing tasks: Coding with API access (CA), Coding without API access (CNA), and Direct Answering (DA). Our analysis reveals that: (1) CA significantly outperforms CNA and DA; (2) LLMs excel at simple tasks but consistently underperform domain experts on compositional tasks requiring parameter tuning and multi-step reasoning. (3) The reasoning mechanism introduced in LRMs does not yield substantial performance gains.To improve the performance, we explore four prompting strategies and fine-tuning approaches (using our newly released sensor-processing corpus). The results show that self-verification prompting proves most effective, outperforming other methods simultaneously in 48\\% of tasks, while fine-tuning yields marginal gains. Our analysis suggests that more sophisticated interaction frameworks, such as signal-level self-verification, may bridge the gap to human expert-level performance. This benchmark provides a foundation for evaluating and improving LLMs in sensing applications"
DOI: 10.5281/zenodo.15770166
title: TROPOMI NO2/CO vs HWP, Interpolated HRRR-Chem Flight Tracks and Curtains, and DC-8 Data with Altitude Adjustment

description: Data Used in HRRR-Chem Figures. Note: DC-8 Data with Bias_Correction in the name has an altitude adjustment described in Anderson et al., 2025 (increase of 1.02 km on Aug. 3 and 1.12 km on Aug. 7). For the official DC-8 Data see the FIREX-AQ data archive at https://www-air.larc.nasa.gov/cgi-bin/ArcView/firexaq?MERGE=1#01_SECOND.DC8_MRG/
DOI: 10.5281/zenodo.15770626
title: TROPOMI NO2/CO vs HWP, Interpolated HRRR-Chem Flight Tracks and Curtains, and DC-8 Data with Altitude Adjustment

description: Data Used in HRRR-Chem Figures. Note: DC-8 Data with Bias_Correction in the name has an altitude adjustment described in Anderson et al., 2025 (increase of 1.02 km on Aug. 3 and 1.12 km on Aug. 7). For the official DC-8 Data see the FIREX-AQ data archive at https://www-air.larc.nasa.gov/cgi-bin/ArcView/firexaq?MERGE=1#01_SECOND.DC8_MRG/
DOI: 10.15468/dl.cxtm53
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silybum marianum (L.) Gaertn.",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079321-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5p3mx6
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silybum marianum (L.) Gaertn.",
 "Country is Armenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079320-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5cdwbe
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silybum marianum (L.) Gaertn.",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 99 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079319-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xpbppf
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hoolock tianxing Peng-Fei Fan, Kai He, Xing Chen et al., 2017",
 "Year 2017-2025"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079323-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jkvgh6
title: Occurrence Download

description: A dataset containing 55657 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucalyptus camaldulensis Denham",
 "Country is Spain",
 "HasCoordinate is true"
 ]
}

 The dataset includes 55657 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079314-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hx9kuy
title: Occurrence Download

description: A dataset containing 12275 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silybum marianum (L.) Gaertn.",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12275 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079326-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3tjgwz
title: Occurrence Download

description: A dataset containing 403 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silybum marianum (L.) Gaertn.",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 403 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079325-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3cuka
title: Occurrence Download

description: A dataset containing 462 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chironomus crassicaudatus Malloch, 1915",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 462 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079329-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qusmjy
title: Occurrence Download

description: A dataset containing 16991 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((79.06473 41.9946,90.17284 42.06036,90.10979 47.06205,79.12546 47.14057,79.06473 41.9946))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Amaranthaceae, Artemisia L., Ephedraceae, Poaceae, Cyperaceae, Ulmaceae, Betulaceae, Pinus L., Picea A.Dietr.)"
 ]
}

 The dataset includes 16991 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079327-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q7sa9v
title: Occurrence Download

description: A dataset containing 168 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sonchus asper (L.) Hill",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 168 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079330-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15770609
title: Rock- and paleomagnetic data of sediment core MR1402-PC3 taken from the Ontong Java Plateau

description: The second dataset for "Magnetic mineral assemblages of diagenetically reduced sediments and their contributions to paleomagnetic signals" by Li Jiaxi et al. submitted to Journal of Geophysical Research - Solid Earth.
DOI: 10.15468/dl.q49n54
title: Occurrence Download

description: A dataset containing 114 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sonchus asper (L.) Hill",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 114 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079331-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.znxc47
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sonchus asper (L.) Hill",
 "Country is Cuba",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079332-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.emwc84
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Glyptotendipes paripes (Edwards, 1929)",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079334-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15770547
title: Rock- and paleomagnetic data of sediment core MR1402-PC3 taken from the Ontong Java Plateau

description: The first dataset for "Magnetic mineral assemblages of diagenetically reduced sediments and their contributions to paleomagnetic signals" by Li Jiaxi et al. submitted to Journal of Geophysical Research - Solid Earth.