cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/3v58fv8bzw
title: Turbulent flow structures over a gobi surface and their impact on aeolian sand transport 

description: This dataset was designed to examine the behavior of turbulent flow structures over gobi surfaces and the impact of these structures on the sand transport rate. Synchronous high-frequency measurements of two time series of 3-D wind speed (20Hz) and saltating particle count rate (1Hz) over a gobi surface (39°8.062´N, 88°59.967´E) in two transport events (10:00 to 16:49 on May 4, 2018, and 18:30-20:19 on May 7, 2018) have been presented. Wind velocity was measured by a RM Young 81000 Ultrasonic anemometer, situated at the height of 0.7 m above the gobi surface at a time interval of 0.05 s, recorded by a Campbell CR 1000 datalogger. The profile of saltating grain number was measured by a vertical array of five piezoelectric impact sensors (H11-LIN, Sensit) at heights of 0.05, 0.12, 0.38, 0.8 and 1.38 m above the gobi surface with a measurement frequency of 1 Hz, also recorded by a Campbell CR 1000 datalogger. The piezoelectric impact sensors at heights of 0.12, 0.8 and 1.38 m were in a vertical profile, while due to the bulk limitation sensors, the piezoelectric impact sensors at heights of 0.05 and 0.38 m were 0.34 m and 0.24 m horizontally apart, respectively, from the vertical array of the other three sensors. The vertical array of the piezoelectric impact sensors was located 0.53 m in the spanwise direction from the anemometer to minimize their influence on airflow. Aeolian saltation flux profiles over gobi were measured by a vertical array of BSNE sand traps deployed at heights of 0.025, 0.175, 0.285, 0.585, 1.155, 1.785 and 3.000 m (midpoints of the trap inlet). A sand trap at the height of 0.275 m was separated 1.22 m horizontally from the left array to decrease the bulk effect of the sand traps from each other as rotating, while the sand trap at 0.025 m was put between the 0.275-m high sand trap and the vertical array and set flush with the gobi surface to measure the saltation flux on the surface, yet it could not rotate. Sand transport rate at 1 Hz can be obtained based on high-frequency time series of Sensit particle counts and low-frequency flux measurements of BSNE traps.
DOI: 10.17632/p3dfxmky46
title: Wearable MEG recorded during human stepping

description: This dataset was collected using optically-pumped magnetoencephalography (OP-MEG) to record brain activity during a visually guided stepping task, alongside leg muscle activity (EMG) and foot kinematics. A structural MRI (in the same coordinate space as OPM sensors) is also provided for each participant. The dataset offers a valuable resource for methodological development in OPM data, within-subject analyses, and exploratory research on neural control during human movement. 
 This comprehensive, multimodal dataset serves as a valuable resource for methodological development in OPM data, within-subject analyses, and exploratory studies on the neural control of human movement.
DOI: 10.6084/m9.figshare.12986069.v1
title: USA covid-19 data

description: This dataset provides information related to the outbreak of COVID-19 disease in the United States
DOI: 10.6084/m9.figshare.23702514.v1
title: Preserved Whole-Brain Functional Topology Hides Local Reorganisation in Genetic Generalised Epilepsy

description: Set of files containing the connectivity matrices and associated measures (e.g. segregation, integration, hub disruption index) of 20 healthy controls and 20 GGE patients, as well as the results of different statistical tests, used in the manuscript entitled: Functional Networks In Genetic Generalised Epilepsy: Preserved Whole-Brain Topology Hides Local Reorganisation.
The README file provides a detailed description of all files.
DOI: 10.6084/m9.figshare.7859864.v2
title: Data from: Cryptic interactions revisited from ecological networks: mosses as a key link between trees and hummingbirds

description: README<br>Data from: Fontúrbel, F.E., F. Osorio, V. Riffo-Donoso, G.O. Carvallo & H. Rydin (2020) Cryptic interactions revisited from ecological networks: mosses as a key link between trees and hummingbirds. Functional Ecology. doi: 10.1111/1365-2435.13691<br>This entry contains a R script along with eight .csv files:<br>(1) moss-tree-quali.csv - Qualitative data on moss-tree relationships.(2) moss-tree-quanti.csv - Quantitative data on moss-tree relationships.(3) moss-tree-excAp.csv - Qualitative data on moss-tree relationships excluding the least connected species (Aextoxicon punctatum).(4) moss-tree-excWt.csv - Qualitative data on moss-tree relationships excluding the most connected species (Weinmannia trichosperma).(5) new-nest-quali.csv - Qualitative data on moss-nest relationships for new nests.(6) new-nest-quanti.csv - Quantitative data on moss-nest relationships for new nests.(7) old-nest-quali.csv - Qualitative data on moss-nest relationships for old nests.(8) old-nest-quanti.csv - Quantitative data on moss-nest relationships for old nests.(9) indbasednwrk.csv - Individual-based network data.<br><br>Data contained here may be freely used on the sole condition of cite the original paper along with this repository entry:Original data from: Fontúrbel, F.E., F. Osorio, V. Riffo-Donoso, G.O. Carvallo & H. Rydin (2020) Cryptic interaction revisited from ecological networks: mosses as a key link between trees and hummingbirds. figshare digital repository, https://doi.org/10.6084/m9.figshare.
DOI: 10.6084/m9.figshare.12667974.v1
title: Additional file 6 of Genome-wide characterization of copy number variations in the host genome in genetic resistance to Marek’s disease using next generation sequencing

description: Additional file 6: Table S5. Lists of line-specific and shared CNVRs in all the chicken lines.
DOI: 10.6084/m9.figshare.14199005.v1
title: Biological mechanisms of growth performance and meat quality in porcine muscle tissue

description: Growth performance and meat quality are important traits for pig production. The aim of the present study was to investigate the molecular mechanisms underlying growth performance and meat quality, and to identify novel target molecules for predicting the growth performance and meat quality. The differentially expressed genes (DEGs) in Diannan small ears pigs (DSP) and Landrace pigs (LP) were assessed by RNA-sequencing analyzing technology. A total of 339 DEGs were obtained between DSP and LP. 146 DEGs were upregulated in LP compared with DSP and 193 DEGs were upregulated in DSP compared with LP. The DEGs were significantly enriched in 26 GO and 3 KEGG pathways. The protein–protein interaction (PPI) network with 201 nodes and 382 edges was constructed and 5 modules were extracted from the entire network. The identified upregulated expression of genes involved in glycolysis and myogenesis as well as extracellular matrix may be associated with fast body and muscle deposition rates in LP. Increased expression of genes involved in PPAR signaling pathway and fatty acid metabolism as well as oxidative phosphate processes could be related to the intramuscular fat deposition and meat quality in DSP. The present study may provide an improved understanding of the growth performance and meat quality.
DOI: 10.6084/m9.figshare.22584481.v1
title: Dataset S1.csv

description: A meta data from literature which met the following criteria: (1) the climatic, soil, and vegetation variables (or conditions) were the same between the control and the N addition treatment sites (i.e. studies along gradients of N deposition were not considered); (2) the research only included species that naturally exist in terrestrial habitats; (3) means, standard deviations (SDs), or errors (SEs), and the sampling sizes for both the control and treatment groups could be directly obtained or could be calculated; (4) the statistical assumption of independence across observations for the long-term N addition study were met and, only the most recent results were included; (5) only data from control and N addition plots were collected when global change treatments other than N addition e.g. added CO2 or increased temperature were tested; (6) data from transgenic plants or plants that had been handled with herbicides, hormones, and/or heavy metals were eliminated since they might have presented a different pattern of biomass distribution. We compiled a database from 255 published articles, containing a total of 3,516 paired observations of 401 terrestrial plant species
DOI: 10.6084/m9.figshare.24442834.v1
title: pulmonaryArteryWeights.h5

description: pulmonary artery weights<br>
DOI: 10.6084/m9.figshare.28295343.v1
title: SIMPER Results Table for Taxonomic Data Analysis from Ancient Frameworks as Modern Templates: Exploring Reef Rubble Consolidation in an Ancient Reef System

description: This table presents the results of the SIMPER analysis conducted using taxonomic data from MF 2 and MF 6.
DOI: 10.6084/m9.figshare.8481098.v1
title: Source Data.xlsx

description: Source data of the article "The antimicrobial peptide thanatin disrupts the bacterial outer membrane and inactivates the NDM-1 metallo-β-lactamase"
DOI: 10.6084/m9.figshare.14442794.v1
title: Lake Mere Biocrust

description: Database of grazing intensity (dry sheep equivalents/ha), herbivore type, patch type, biocrust abundance, richness and cover, plant cover and litter cover for 36 locations in eastern Australia<br>
DOI: 10.6084/m9.figshare.15149070.v1
title: Lack of congruence between fundamental and realised aridity niche in a lineage of water beetles

description: Occurrence data for eight species of water beetles (genus <i>Enochrus</i>, family Hydrophilidae) used for the analyses made by Pallarés et al. in the study entitled "<i><b>Lack of congruence between fundamental and realized aridity niche in a lineage of water beetle</b></i>s"<br>
DOI: 10.6084/m9.figshare.21877134.v1
title: sample metadata

description: Details of samples were involved into the study.
DOI: 10.15131/shef.data.10279643.v2
title: Data and scenarios for projecting Philippine health expenditures and Philippine Health Insurance (PhilHealth) revenues using the International Labour Organization (ILO) Health Budget Model

description: These contain my projections of Philippine health insurance expenditures from 2010 to 2014. The determinants of health expenditure growth are size and structure of the population, real growth rate, and GDP growth rate.
DOI: 10.17632/2h9ns58g5f
title: Dataset on sleep, daily activity, and health status of older people.

description: Data were obtained using the Xiaomi Mi band device and assessment tools.
DOI: 10.6084/m9.figshare.13524050.v2
title: Dataset for "Quantum confinement of the Dirac surface states in topological-insulator nanowires"

description: Dataset of publication „Quantum confinement of the Dirac surface states in topological-insulator nanowires“Abstract of publication: The non-trivial topology of the three-dimensional topological insulator dictates the appearance of gapless Dirac surface states. Intriguingly, when made into a nanowire quantum confinement leads to a peculiar gapped Dirac sub-band structure. This gap is useful for, e.g., future Majorana qubits based on TIs. Furthermore, these sub-bands can be manipulated by a magnetic flux and are an ideal platform for generating stable Majorana zero modes, playing a key role in topological quantum computing. However, direct evidence for the Dirac sub-bands in TI nanowires has not been reported so far. Here, using devices fabricated from thin bulk-insulating (Bi<sub>1−x</sub>Sb<sub>x</sub>)<sub>2</sub>Te<sub>3</sub> nanowires we show that non-equidistant resistance peaks, observed upon gate-tuning the chemical potential across the Dirac point, are the unique signatures of the quantized sub-bands. These TI nanowires open the way to address the topological mesoscopic physics, and eventually the Majorana physics when proximitised by an s-wave superconductor. <br>
DOI: 10.17632/tvhh83r3hj
title: Avo-AirDB: An avocado UAV Database for agricultural image segmentation and classification

description: Avo-AirDB represents a database of an avocado field located in Morocco. it contains 984 high-resolution RGB aerial images, as well as 93 annotated images in two different ways. the data is dedicated to researchers in the digital agricultural domain. it can be used to develop machine learning algorithms.
DOI: 10.6084/m9.figshare.12624224.v1
title: Supplementary Material for: Multicenter Cohort Study to Assess the Association between Changes on Imaging and Outcome after Regorafenib Treatment (KSCC1603)

description: <b><i>Background:</i></b> Molecular targeted drugs having angiogenesis-inhibiting properties allow the induction of necrosis inside tumors. We retrospectively investigated the relationship between changes on imaging associated with regorafenib (REGO) and treatment outcomes using real-world data. <b><i>Patients and Methods:</i></b> The eligibility criteria included an ECOG PS of 0–1, a starting dose of 120 or 160 mg/day of REGO, and a duration of treatment of at least 35 days. Regarding changes on imaging, cavitation in lung lesions (CLL), morphologic response of liver lesions (MRL), and change of liver metastasis density (CLD) were evaluated. <b><i>Results:</i></b> We finally screened 671 cases, and 226 cases were eligible. In total, 172 and 145 patients had lung and liver metastases, respectively. Among the patients with lung metastasis, CLL was found in 69 patients (40.0%). The median progression-free survival (PFS) of the patients with and those without CLL was 3.2 and 2.4 months, respectively (hazard ratio [HR] = 0.758; 95% confidence interval [CI]: 0.529–1.087), and the median overall survival (OS) of these groups was 10.5 and 8.9 months, respectively (HR = 0.862; 95% CI: 0.579–1.285). MRL and CLD of liver metastasis were analyzed in 145 and 90 patients, respectively. The median OS with and without MRL was 8.9 and 8.2 months, respectively, whereas the median OS with and without CLD was 11.6 and 7.7 months, respectively (HR = 0.523; 95% CI: 0.275–0.992). <b><i>Conclusion:</i></b> CLL may predict PFS but not OS among patients with lung metastasis. CLD was predictive of favorable outcomes for REGO in patients with liver metastasis.
DOI: 10.6084/m9.figshare.28262891.v1
title: Data for the scientific article: Response of subalpine plant vegetation to snow cover duration quantified by in situ repeat photography

description: We examined the association of snow cover duration and the spatial pattern of four dominant vegetation types in the subalpine region. We used a novel approach to create maps of snow cover duration by combining time-series photographic data on snow distribution and vegetation patterns. Key explanatory factors included snow cover duration, snow melting time, elevation, and proximity to ski slopes.
DOI: 10.17632/3766fb76w6
title: BDEggs: A comprehensive image dataset of different types of eggs from birds in Bangladesh

description: Introducing the dataset “BDEggs”, a distinguishable collection of eight bird egg species commonly found across all of Bangladesh. With a focus on providing comprehensive information, this dataset encompasses eight distinct species of eggs, including: 1. Budgerigar (Melopsittacus undulatus), 2. Domestic pigeon (Columba livia domestica), 3. Domestic duck (Anas platyrhynchos domesticus), 4. Broiler chicken (Gallus gallus domesticus) 5. Country chicken (Gallus gallus domesticus) 6. Quail (Coturnix coturnix), 7. Guinea Fowl (Numididae), 8. China duck (Anas zonorhyncha) Our team has painstakingly gathered a total of 1200 original images. Each original image was diligently captured with natural lighting and an appropriate background, ensuring utmost attention to detail. We dedicated two months, from August 20, 2023, to September 24, 2023, to collect these images from various areas within the Dhaka division. This comprehensive dataset holds immense potential for researchers to leverage advanced machine learning and deep learning techniques in order to drive meaningful advancements in the agricultural sector. As a valuable resource, it paves the way for groundbreaking discoveries in these fields in the future.
DOI: 10.17632/84vknw3gbk
title: LINF_170018100

description: Ubiquitinyl hydrolase; Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.25045952.v1
title: An intervention study on college students employment anxiety based on Interpretation Bias Modification: A Randomized Controlled Experiment

description: The datasets of the study "An intervention study on college students employment anxiety based on Interpretation Bias Modification: A Randomized Controlled Experiment"
DOI: 10.17632/2dvpgsnxr5
title: Data Set and Test Result of the Article "The Role of Diversity on The Environmental Result and Transparency of The Companies"

description: The data includes the E,S,G and ESG Score, Board Size and Women on Board (%) data of the 166 companies from S&P500 and STOXX Europe 600 Indices from 2008 to 2021. In addition, the results of the research obtained from the E-views software are also shared.
DOI: 10.4121/21501423.v1
title: Delft Systematic Yacht Hull Series RAW coefficients data

description: The paper '2006 - MDY - Added Resistance in Waves' refers to a long list of RAW coefficients which is given in Excel-format. (RAW = Added Resistance in Waves)
DOI: 10.17632/psymy4ddnw
title: MISTER-T: An open-source software package for quantum optimal control of multi-electron systems on arbitrary geometries

description: We present an open-source software package, MISTER-T (Manipulating an Interacting System of Total Electrons in Real-Time), for the quantum optimal control of interacting electrons within a time-dependent Kohn-Sham formalism. In contrast to other implementations restricted to simple models on rectangular domains, our method enables quantum optimal control calculations for multi-electron systems (in the effective mass formulation) on nonuniform meshes with arbitrary two-dimensional cross-sectional geometries. Our approach is enabled by forward and backward propagator integration methods to evolve the Kohn-Sham equations with a pseudoskeleton decomposition algorithm for enhanced computational efficiency. We provide several examples of the versatility and efficiency of the MISTER-T code in handling complex geometries and quantum control mechanisms. The capabilities of the MISTER-T code provide insight into the implications of varying propagation times and local control mechanisms to understand a variety of strategies for manipulating electron dynamics in these complex systems.
DOI: 10.17632/yt99rmbcdt
title: Multimodal imaging of the dynamic brain tumor microenvironment during glioblastoma progression and in response to treatment

description: •	The deposited data have been generated by intravital imaging of glioma-bearing mice, which allows one to longitudinally track different cell types during tumor progression and response to therapy. 
•	Raw and processed data are divided into two folders, based on the cell lineage-tracing model used (either CX3CR1 or FLT3 lineage-tracing model).
•	Each folder contains the raw imaging data and an R script folder.
•	The raw imaging data consist of “Statistics”, parameters extracted after analysis with Imaris (.csv files). Each subfolder represents a specific timepoint for a unique imaging position in one individual mouse. Note that each segmented component (microglia (MG), second harmonic generation (SHG, measuring collagen), and tumor cells) have their own individual subfolder.
•	The R script folder contains 3 files: the source file containing custom functions for processing and visualization; the processing file which combines imaging- and metadata, and transforms this into a single experimental object in R; and the output file which presents the analyses and visualizations of the data.
DOI: 10.6084/m9.figshare.21757067.v2
title: Dataset Preventing swarm in EV-FCM

description: We performed flow cytometry measurements to compare the total particle concentrations and the concentrations of extracellular vesicles (EVs) released from platelets (CD61+)<br> between plasma samples measured at various dilution factors. Measurement results were compared with particle size distributions obtained with microfluidic resistive pulse sensing (MRPS). We applied the MIFlowCyt-EV standard for data reporting.
DOI: 10.6084/m9.figshare.28657617.v1
title: Supporting Information for 'A test for microbiome-mediated rescue via host phenotypic plasticity in Daphnia'

description: This file includes measured microcystin concentrations, quality control steps to measure cyanotoxins, and the physicochemical properties of the test solution throughout the study
DOI: 10.17632/sy5khzgs2w
title: Protein-protein docking studies –Protein Docking Analysis of BRCA with human kallikreins for prostate cancerHuman Kallikreins in Prostate Cancer

description: For our study on Protein-protein docking studies –Protein Docking Analysis of BRCA with human kallikreins for prostate cancerHuman Kallikreins in Prostate Cancer , the data includes all the docking files for recarrying out the experiment. 
Top-ranked docked PDB files for each receptor–ligand pair (.pdb)

Scoring summaries (.txt or .csv) listing HDOCK scores and rank order

Configuration files showing the input parameters used for each docking run

A README in the dataset provides file descriptions and instructions for re-using the docking results.
DOI: 10.6084/m9.figshare.28624955.v2
title: <i>Curso</i> Genetica de Conservacion<i> </i><i>Genetica</i><i> de </i><i>Conservacion</i>

description: Datasets and presentations for the "<i>Curso</i><i> </i><i>Genetica</i><i> de </i><i>Conservacion"</i>
DOI: 10.17632/x5sgmd3tzv
title: The levels of testosterone secretion during the post-awakening period in men

description: The levels of testosterone secretion during the post-awakening period were determined in saliva samples collected from adult men (aged 24-80 years). The participants of this study can be classified into two subgroups based on their CARi (CARi = Cortisol levels at 30 min after awakening - Cortisol levels immediately upon awakening ) . Typical CAR (i.e., CARi &gt; 2.5 nmol/L) was observed in 155 participants (participants exhibiting typical CAR). No typical CAR, either less than a 2.5 nmol/L increase or the complete absence of a post-awakening increase (i.e., negative CAR), was found in 70 participants (participants exhibiting no typical CAR).
DOI: 10.6084/m9.figshare.28718954.v1
title: Spatial Files

description: Spatial information on site and patch locations
DOI: 10.6084/m9.figshare.3413665.v2
title: The Dark Side of Resilience and Burnout: A Mediation-Moderation Model.sav

description: Dataset of 11 HDS composite traits, Resilience items, and Burnout items used in 'The Dark Side of Resilience and Burnout: A Mediation-Moderation Model' paper in PlosOne.
DOI: 10.17632/3vczb7hhzk
title: QMMMW: A wrapper for QM/MM simulations with Quantum ESPRESSO  and LAMMPS

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We present QMMMW, a new program aimed at performing Quantum Mechanics/Molecular Mechanics (QM/MM) molecular dynamics. The package operates as a wrapper that patches PWscf code included in the Quantum ESPRESSO  distribution and LAMMPS Molecular Dynamics Simulator. It is designed with a paradigm based on three guidelines: (i) minimal amount of modifications on the parent codes, (ii) flexibility and computational efficiency of the communication layer and (iii) accuracy of the Hamiltonian describ... Title of program: QMMMW Catalogue Id: AEWS_v1_0 Nature of problem Calculation of the hybrid quantum mechanics / molecular mechanics of molecular systems. Versions of this program held in the CPC repository in Mendeley Data AEWS_v1_0; QMMMW; 10.1016/j.cpc.2015.04.024