cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1053163.v1
title: Risk of Trypanosoma cruzi I (Kinetoplastida: Trypanosomatidae) transmission by Panstrongylus geniculatus (Hemiptera: Reduviidae) in Caracas (Metropolitan District) and neighboring States, Venezuela

description: The collection of Panstrongylus geniculatus bugs by inhabitants of dwellings in Caracas city (Metropolitan District) and in the<br>neighboring Miranda and Vargas Sates, Venezuela, allowed for the gathering of data on the potential role of this sylvatic triatomine bug as a<br>vector of Chagas disease in this area. The natural infection by Trypanosoma cruzi was recorded by examining fresh and stained faeces of the<br>bugs. Additionally, a random amplification of polymorphic DNA technique for parasite identification and group typing was employed. A dot-<br>ELISA test was used to identify the gut content of the triatomine bugs with the aim of assessing and quantifying the vector–human contact.<br>Sixty-seven specimens (76.1%) were positive to T. cruzi (identified as T. cruzi I) and 60.2% (53/88) gave a positive reaction to the human<br>antiserum. The human blood-positive samples included mixed blood meals with domestic animals (dog, pig and cow) (9.4%) and with mouse<br>(3.8%). The overall Human Blood Index, measured as the percentage of bugs whose gut contents reacted with human antiserum on the total<br>numbers of bugs that reacted with all the antisera tested, was 98.1%. Almost 41% of the bugs that had fed on humans were also positive for<br>T. cruzi. These data show that the feeding of P. geniculatus on humans does not seem to be accidental and that its rate of infection by T. cruzi<br>is high in this area which is not regarded as endemic for Chagas disease by the National Control Programme. This situation is particularly<br>striking because it occurs in and around Caracas, the capital city, where 20% of the whole population of Venezuela live, human migrations<br>from endemic areas are continuous, people in the crowded shantytown as well as people living in high-quality country houses are equally at<br>risk and the epidemiological cycle Didelphis marsupialis/Rattus rattus–P. geniculatus–human does appear to occur successfully.<br>q 2005 Australian Society for Parasitology Inc. Published by Elsevier Ltd. All rights reserved
DOI: 10.6084/m9.figshare.12921926.v1
title: tec00134_PC_TOT_CP09

description: Final household consumption on recreation and culture % of total
DOI: 10.6084/m9.figshare.1053160
title: T. cruzi genotypes from mammals of different States in Venezuela

description: T. cruzi genotypes from mammals of different States in Venezuela
DOI: 10.6084/m9.figshare.12921926
title: tec00134_PC_TOT_CP09

description: Final household consumption on recreation and culture % of total
DOI: 10.6084/m9.figshare.1053159
title: T. cruzi genotypes from bugs of different States in Venezuela

description: T. cruzi genotypes from bugs of different States in Venezuela
DOI: 10.6084/m9.figshare.1053158
title: T. cruzi genotypes from human of different States in Venezuela

description: T. cruzi genotypes from human of different States in Venezuela
DOI: 10.6084/m9.figshare.1053160.v1
title: T. cruzi genotypes from mammals of different States in Venezuela

description: T. cruzi genotypes from mammals of different States in Venezuela
DOI: 10.6084/m9.figshare.1053159.v1
title: T. cruzi genotypes from bugs of different States in Venezuela

description: T. cruzi genotypes from bugs of different States in Venezuela
DOI: 10.6084/m9.figshare.1053158.v1
title: T. cruzi genotypes from human of different States in Venezuela

description: T. cruzi genotypes from human of different States in Venezuela
DOI: 10.6084/m9.figshare.1053150
title: Pollinator observations in google images

description: Using Google Image Search, we conducted searches for “[Plant Latin name] bee” using the list of native Michigan plants that were used in our group’s common garden studies (Table 1) (Fiedler 2006; Fiedler & Landis 2007a; Tuell et al. 2008). Images were evaluated sequentially, in the order they appeared in the search results. Images were evaluated by the following criteria: 1) each search procedure received one tally for each image containing the correct plant species, shown in bloom, and in sufficient detail such that target insect taxa could be reliably identified. 2) in the set of images where the previous condition was met, the number of images where Apis, non-Apis bees, and syrphid flies were visible were tallied and recorded. For each search procedure, photos were sequentially evaluated until 30 images meeting criterion 1 were evaluated, or until 200 images were examined. The number of images evaluated for each search was recorded. Duplicate images and close up shots of previously counted images were excluded from evaluation and not counted towards the total images searched. #####################################<br># variables and descriptions<br>#<br>#Plant- plant species on which observations were made<br>#<br>#BloomPeriod - bloom period of plant species, as classified by Tuell et al 2008<br>#<br>#BloomOrder- As BloomPeriod, but categorized as A, B, C, to enable alphabetical<br># sorting for creating figures<br>#<br>#ImagesSearched - Total number of search results evaluated in order to meet criteria<br># (see methods for criteria for evaluating search results)<br>#<br>#CriteriaMet- total number of images meeting criteria that were evaluated, before<br># reaching 200 search results<br>#<br>#Totinsects- total number of images meeting criteria where 'bee-like' insects were visible<br>#<br>#GoogleApis- total number of images meeting criteria where Apis bees were visible<br>#<br>#GoogleNonApis - total number of images meeting criteria where non-Apis bees were visible<br>#<br>#GoogleBees- total number of images meeting critertia where any type of bee was visible<br># (GoogleApis+GoogleNonApis)<br>#<br>#GoogleSyrphids - total number of images meeting criteria where syrphid flies were visible<br>#<br>#JuliannaNonApis- Non-apis bee counts by plant from Tuell et al 2008<br>#<br>#JuliannaRichness- Non-apis bee counts by plant from Tuell<br>#<br>#JuliannaApis - Apis bee counts by plant from Tuell<br>#<br>#JuliannaBees -total bees observed by Tuell (JuliannaApis+JuliannaNonApis)<br>#<br>#AnnaSyrphid - syrphid counts from Fielder 2006 thesis by plant<br>#<br>#####################################
DOI: 10.6084/m9.figshare.1053136
title: Tablemaker OS X Binary

description: This is the OS X Binary of the Tablemaker component of the Ballgown pipeline. https://github.com/alyssafrazee/ballgown
DOI: 10.6084/m9.figshare.1053137
title: Tablemaker Linux Binary

description: This is the Linux binary for Tablemaker, part of the Ballgown pipeline.
DOI: 10.6084/m9.figshare.1053135
title: Summary of accession used

description: Summary of the accession numbers used for alignment and tree building in Datasets S1 to S14
DOI: 10.6084/m9.figshare.1053116
title: Experimental Dataset

description: Experimental measurements in single cells extracted from atrial trabeculae in SR and cAF patients
DOI: 10.6084/m9.figshare.1053135.v1
title: Summary of accession used

description: Summary of the accession numbers used for alignment and tree building in Datasets S1 to S14
DOI: 10.6084/m9.figshare.1053115
title: Reinforcement as a conservation tool – assessing site fidelity and movement of the endangered elongated tortoise <i>Indotestudo elongata</i> (Blyth, 1854)

description: In order to assess the efficacy of reinforcement as a conservation tool for rehabilitated elongated tortoises <i>Indotestudo elongata</i> (Blyth, 1854) we released 10 adults equipped with radio tracking transmitters to the Kulen Promtep Wildlife Sanctuary in northern Cambodia. Based on short-term success indicators for reintroduction studies on reptiles we studied the tortoises’ adaptation to the new environment for five months. The tortoises successfully settled in the new environment without showing adverse effects regarding their behaviour, condition index (CI) and physical appearance. The annual survival rate was 76%. Based on individual locations collected, we analysed the tortoises’ movement patterns including daily displacement, five-month and seasonal home range sizes using minimum convex polygons (MCPs) and fixed kernel density estimators (KDEs).
DOI: 10.6084/m9.figshare.1053116.v1
title: Experimental Dataset

description: Experimental measurements in single cells extracted from atrial trabeculae in SR and cAF patients
DOI: 10.6084/m9.figshare.1053093
title: Riddell 2014 Differentially expressed genes for eac analysis

description: THese are the sequences, statistics and annotations for all the differentially expressed genes associated with 1)infection with Crithidia at 24 hours, 2) difference between 24 and 48 hours and 3)specificity (host- parasite genotype-genotype interactions)
DOI: 10.6084/m9.figshare.1053135.v3
title: Summary of accession used

description: Summary of the accession numbers used for alignment and tree building in Datasets S1 to S14
DOI: 10.6084/m9.figshare.1053135.v2
title: Summary of accessions used

description: Summary of the accession numbers used for alignment and tree building in Datasets S1 to S14
DOI: 10.6084/m9.figshare.1053092
title: Complete DEXSeq analysis results

description: This is the complete htmls showing all the graphs output for the 615 genes showing alternative splicing related to immune specificity of Bumblebee-Crithidia interactions.
DOI: 10.6084/m9.figshare.1053115.v2
title: Reinforcement as a conservation tool – assessing site fidelity and movement of the endangered elongated tortoise <i>Indotestudo elongata</i> (Blyth, 1854)

description: In order to assess the efficacy of reinforcement as a conservation tool for rehabilitated elongated tortoises <i>Indotestudo elongata</i> (Blyth, 1854) we released 10 adults equipped with radio tracking transmitters to the Kulen Promtep Wildlife Sanctuary in northern Cambodia. Based on short-term success indicators for reintroduction studies on reptiles we studied the tortoises’ adaptation to the new environment for five months. The tortoises successfully settled in the new environment without showing adverse effects regarding their behaviour, condition index (CI) and physical appearance. The annual survival rate was 76%. Based on individual locations collected, we analysed the tortoises’ movement patterns including daily displacement, five-month and seasonal home range sizes using minimum convex polygons (MCPs) and fixed kernel density estimators (KDEs).
DOI: 10.6084/m9.figshare.1053092.v2
title: Complete DEXSeq analysis results

description: This is the complete htmls showing all the graphs output for the 615 genes showing alternative splicing related to immune specificity of Bumblebee-Crithidia interactions.
DOI: 10.6084/m9.figshare.1053092.v1
title: XOmplte DEXSeq analysis results

description: This is the complete htmls showing all the graphs output for the 615 genes showing alternative splicing related to immune specificity of Bumblebee-Crithidia interactions.
DOI: 10.6084/m9.figshare.1053093.v1
title: Differentially expressed genes for eac analysis

description: THese are the sequences, statistics and annotations for all the differentially expressed genes associated with 1)infection with Crithidia at 24 hours, 2) difference between 24 and 48 hours and 3)specificity (host- parasite genotype-genotype interactions)
DOI: 10.6084/m9.figshare.1053115.v1
title: Reinforcement as a conservation tool – assessing site fidelity and movement of the endangered elongated tortoise <i>Indotestudo elongata</i> (Blyth, 1854)

description: In order to assess the efficacy of reinforcement as a conservation tool for rehabilitated elongated tortoises <i>Indotestudo elongata</i> (Blyth, 1854) we released 10 adults equipped with radio tracking transmitters to the Kulen Promtep Wildlife Sanctuary in northern Cambodia. Based on short-term success indicators for reintroduction studies on reptiles we studied the tortoises’ adaptation to the new environment for five months. The tortoises successfully settled in the new environment without showing adverse effects regarding their behaviour, condition index (CI) and physical appearance. The annual survival rate was 76%. Based on individual locations collected, we analysed the tortoises’ movement patterns including daily displacement, five-month and seasonal home range sizes using minimum convex polygons (MCPs) and fixed kernel density estimators (KDEs).
DOI: 10.6084/m9.figshare.1053084
title: Point and Interval Estimators of the Target Dose in Clinical Dose-Finding Studies with Active Control

description: In a clinical dose finding study with active control a new drug with several dose levels is compared with an active comparator drug. The main focus of such studies often lies on the estimation of a target dose that leads to the same efficacy as the control. This article investigates the finite sample properties of the maximum likelihood estimation of the target dose and compares several approaches for constructing corresponding confidence intervals under the assumption of a linear dose-response curve and normal error terms. Furthermore, the impact of deviations from the model assumptions regarding the error distribution is explored.
DOI: 10.6084/m9.figshare.1053093.v3
title: Riddell 2014 Differentially expressed genes for eac analysis

description: THese are the sequences, statistics and annotations for all the differentially expressed genes associated with 1)infection with Crithidia at 24 hours, 2) difference between 24 and 48 hours and 3)specificity (host- parasite genotype-genotype interactions)
DOI: 10.6084/m9.figshare.1053093.v2
title: Riddell 2014Differentially expressed genes for eac analysis

description: THese are the sequences, statistics and annotations for all the differentially expressed genes associated with 1)infection with Crithidia at 24 hours, 2) difference between 24 and 48 hours and 3)specificity (host- parasite genotype-genotype interactions)
DOI: 10.6084/m9.figshare.1053082
title: Nonlinear Calibration Model Choice between the Four and Five-Parameter Logistic Models

description: Both the four-parameter logistic (4PL) and the five-parameter logistic (5PL) models are widely used in nonlinear calibration. In this paper, we study the choice between 5PL and 4PL both by the accuracy and precision of the estimated concentrations and by the power to detect an association between a binary disease outcome and the estimated concentrations. Our results show that when the true curve is symmetric around its inflection point, the efficiency loss from using 5PL is negligible under the prevalent experimental design. When the true curve is asymmetric, 4PL may sometimes offer better performance due to bias-variance trade-off. We provide a practical guideline for choosing between 5PL and 4PL and illustrate its application with a real dataset from the HIV Vaccine Trials Network laboratory.
DOI: 10.6084/m9.figshare.1053084.v1
title: Point and interval estimators of the target dose in clinical dose-finding studies with active control

description: In a clinical dose finding study with active control a new drug with several dose levels is compared with an active comparator drug. The main focus of such studies often lies on the estimation of a target dose that leads to the same efficacy as the control. This paper investigates the finite sample properties of the maximum likelihood estimation of the target dose and compares several approaches for constructing corresponding confidence intervals under the assumption of a linear dose-response curve and normal error terms. Furthermore, the impact of deviations from the model assumptions regarding the error distribution is explored.
DOI: 10.6084/m9.figshare.1053084.v2
title: Point and Interval Estimators of the Target Dose in Clinical Dose-Finding Studies with Active Control

description: In a clinical dose finding study with active control a new drug with several dose levels is compared with an active comparator drug. The main focus of such studies often lies on the estimation of a target dose that leads to the same efficacy as the control. This article investigates the finite sample properties of the maximum likelihood estimation of the target dose and compares several approaches for constructing corresponding confidence intervals under the assumption of a linear dose-response curve and normal error terms. Furthermore, the impact of deviations from the model assumptions regarding the error distribution is explored.
DOI: 10.6084/m9.figshare.1053082.v1
title: Nonlinear Calibration Model Choice between the Four and Five Parameter Logistic Models

description: Both the four-parameter logistic (4PL) and the five-parameter logistic (5PL) models are widely used in nonlinear calibration. In this paper, we study the choice between 5PL and 4PL both by the accuracy and precision of the estimated concentrations and by the power to detect an association between a binary disease outcome and the estimated concentrations. Our results show that when the true curve is symmetric around its inflection point, the efficiency loss from using 5PL is negligible under the prevalent experimental design. When the true curve is asymmetric, 4PL may sometimes offer better performance due to bias-variance trade-off. We provide a practical guideline for choosing between 5PL and 4PL and illustrate its application with a real dataset from the HIV Vaccine Trials Network laboratory.
DOI: 10.6084/m9.figshare.1053084.v4
title: Point and Interval Estimators of the Target Dose in Clinical Dose-Finding Studies with Active Control

description: In a clinical dose finding study with active control a new drug with several dose levels is compared with an active comparator drug. The main focus of such studies often lies on the estimation of a target dose that leads to the same efficacy as the control. This article investigates the finite sample properties of the maximum likelihood estimation of the target dose and compares several approaches for constructing corresponding confidence intervals under the assumption of a linear dose-response curve and normal error terms. Furthermore, the impact of deviations from the model assumptions regarding the error distribution is explored.
DOI: 10.6084/m9.figshare.1053084.v3
title: Point and Interval Estimators of the Target Dose in Clinical Dose-Finding Studies with Active Control

description: In a clinical dose finding study with active control a new drug with several dose levels is compared with an active comparator drug. The main focus of such studies often lies on the estimation of a target dose that leads to the same efficacy as the control. This article investigates the finite sample properties of the maximum likelihood estimation of the target dose and compares several approaches for constructing corresponding confidence intervals under the assumption of a linear dose-response curve and normal error terms. Furthermore, the impact of deviations from the model assumptions regarding the error distribution is explored.
DOI: 10.6084/m9.figshare.1053082.v2
title: Nonlinear Calibration Model Choice between the Four and Five-Parameter Logistic Models

description: Both the four-parameter logistic (4PL) and the five-parameter logistic (5PL) models are widely used in nonlinear calibration. In this paper, we study the choice between 5PL and 4PL both by the accuracy and precision of the estimated concentrations and by the power to detect an association between a binary disease outcome and the estimated concentrations. Our results show that when the true curve is symmetric around its inflection point, the efficiency loss from using 5PL is negligible under the prevalent experimental design. When the true curve is asymmetric, 4PL may sometimes offer better performance due to bias-variance trade-off. We provide a practical guideline for choosing between 5PL and 4PL and illustrate its application with a real dataset from the HIV Vaccine Trials Network laboratory.
DOI: 10.6084/m9.figshare.1053082.v4
title: Nonlinear Calibration Model Choice between the Four and Five-Parameter Logistic Models

description: Both the four-parameter logistic (4PL) and the five-parameter logistic (5PL) models are widely used in nonlinear calibration. In this paper, we study the choice between 5PL and 4PL both by the accuracy and precision of the estimated concentrations and by the power to detect an association between a binary disease outcome and the estimated concentrations. Our results show that when the true curve is symmetric around its inflection point, the efficiency loss from using 5PL is negligible under the prevalent experimental design. When the true curve is asymmetric, 4PL may sometimes offer better performance due to bias-variance trade-off. We provide a practical guideline for choosing between 5PL and 4PL and illustrate its application with a real dataset from the HIV Vaccine Trials Network laboratory.
DOI: 10.6084/m9.figshare.1053082.v3
title: Nonlinear Calibration Model Choice between the Four and Five-Parameter Logistic Models

description: Both the four-parameter logistic (4PL) and the five-parameter logistic (5PL) models are widely used in nonlinear calibration. In this paper, we study the choice between 5PL and 4PL both by the accuracy and precision of the estimated concentrations and by the power to detect an association between a binary disease outcome and the estimated concentrations. Our results show that when the true curve is symmetric around its inflection point, the efficiency loss from using 5PL is negligible under the prevalent experimental design. When the true curve is asymmetric, 4PL may sometimes offer better performance due to bias-variance trade-off. We provide a practical guideline for choosing between 5PL and 4PL and illustrate its application with a real dataset from the HIV Vaccine Trials Network laboratory.
DOI: 10.6084/m9.figshare.1053074
title: Trimmed and cleansed reads

description: Reads used for the WABI 2014 experiment
DOI: 10.6084/m9.figshare.1053071
title: Timmed and clean reads (i)

description: Timmed and clean reads
DOI: 10.6084/m9.figshare.1053074.v2
title: Trimmed and cleansed reads

description: Reads used for the WABI 2014 experiment
DOI: 10.6084/m9.figshare.1053074.v1
title: Trimmed and cleansed reads

description: Reads used for the WABI 2014 experiment
DOI: 10.6084/m9.figshare.1053070
title: Timmed and clean reads (h)

description: Timmed and clean reads (1 part)
DOI: 10.6084/m9.figshare.1053071.v1
title: Timmed and clean reads (1 part)

description: <br><br>
DOI: 10.6084/m9.figshare.1053068
title: Timmed and clean reads (g)

description: Timmed and clean reads (1 part)
DOI: 10.6084/m9.figshare.1053070.v2
title: Timmed and clean reads (h)

description: Timmed and clean reads (1 part)
DOI: 10.6084/m9.figshare.1053067
title: Timmed and clean reads (f)

description: Timmed and clean reads
DOI: 10.6084/m9.figshare.1053070.v1
title: Timmed and clean reads (1 part)

description: Timmed and clean reads (1 part)
DOI: 10.6084/m9.figshare.1053071.v3
title: Timmed and clean reads (i)

description: Timmed and clean reads
DOI: 10.6084/m9.figshare.1053064
title: Timmed and clean reads (c)

description: Timmed and clean reads
DOI: 10.6084/m9.figshare.1053066
title: Timmed and clean reads (e)

description: Timmed and clean reads
DOI: 10.6084/m9.figshare.1053068.v1
title: Timmed and clean reads (g)

description: Timmed and clean reads (1 part)
DOI: 10.6084/m9.figshare.1053071.v2
title: Timmed and clean reads (h)

description: Timmed and clean reads
DOI: 10.6084/m9.figshare.1053063
title: Timmed and clean reads (b)

description: Timmed and clean reads
DOI: 10.6084/m9.figshare.1053065
title: Timmed and clean reads (d)

description: Timmed and clean reads
DOI: 10.6084/m9.figshare.1053067.v1
title: Timmed and clean reads (f)

description: Timmed and clean reads
DOI: 10.6084/m9.figshare.1053062
title: Timmed and clean reads (a)

description: Timmed and clean reads
DOI: 10.6084/m9.figshare.1053063.v1
title: Timmed and clean reads (b)

description: Timmed and clean reads
DOI: 10.6084/m9.figshare.1053064.v1
title: Timmed and clean reads (c)

description: Timmed and clean reads