cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1119998.10fu
title: SH1119998.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1120002.10fu
title: SH1120002.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.26014990
title: ­­­Gag proteins encoded by endogenous retroviruses are required for zebrafish development - Supplementary Data

description: Transposable elements (TEs) make up the bulk of eukaryotic genomes and examples abound of TE-derived sequences repurposed for organismal function. The process by which TEs become coopted remains obscure because most cases involve ancient, transpositionally inactive elements. Reports of active TEs serving beneficial functions are scarce and often contentious due to difficulties in manipulating repetitive sequences. Here we show that recently active TEs in zebrafish encode products critical for embryonic development. Knockdown and rescue experiments demonstrate that the endogenous retrovirus family BHIKHARI-1 (Bik-1) encodes a Gag protein essential for mesoderm development. Mechanistically, Bik-1 Gag associates with the cell membrane and its ectopic expression in chicken embryos alters cell migration. Similarly, depletion of BHIKHARI-2 Gag, a relative of Bik-1, causes defects in neural crest development in zebrafish. We propose an “addiction” model to explain how active TEs can be integrated into conserved developmental processes.
DOI: 10.15468/dl.fg6ngd
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Material sample)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hypothenemus hampei (Ferrari, 1867)"
 ]
}

 The dataset includes 112 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010657-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yr5gt4
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Strobilanthes elmeri Y.F.Deng"
 ]
}

 The dataset includes 14 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240485-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2es7st
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heuchera caroliniana (Rosend., Butters & Lakela) E.F.Wells"
 ]
}

 The dataset includes 95 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242289-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bnehjb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium anomodon Ósk."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242817-230224095556074/datasets/export for details.
DOI: 10.15468/dl.w4uaba
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Strobilanthes bulusanensis Elmer"
 ]
}

 The dataset includes 31 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240478-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2h6qba
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium antarcticum Phil., 1873"
 ]
}

 The dataset includes 71 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242818-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f88dea
title: Occurrence Download

description: A dataset containing 7545 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Asia, Europe)",
 "Geometry POLYGON((-8.06639 33.46881,20.22393 29.68192,30.47081 32.80054,30.47081 48.17086,14.43221 49.28466,6.41291 47.05707,-1.16088 42.15639,-9.40294 39.9288,-8.06639 33.46881))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Peyssonnelia Decaisne, 1841"
 ]
}

 The dataset includes 7545 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011023-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ed39c
title: Occurrence Download

description: A dataset containing 177292 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Hypericum maculatum Crantz, Hypericum maculatum Orsini, Hypericum maculatum Crantz, Hypericum maculatum Orsini ex Nyman, Hypericum maculatum Willd., Hypericum maculatum Walter, Hypericum maculatum Willd. ex Steud., Hypericum maculatum Michx., Hypericum maculatum subsp. maculatum)"
 ]
}

 The dataset includes 177292 records from 684 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031009-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w5496r
title: Occurrence Download

description: A dataset containing 106 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euglossa villosiventris Moure, 1968"
 ]
}

 The dataset includes 106 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242262-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5k44cz
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Panstrongylus tupynambai Lent, 1942",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 17 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069445-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s6swvn
title: Occurrence Download

description: A dataset containing 11549 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bactrocera dorsalis (Hendel, 1912)"
 ]
}

 The dataset includes 11549 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242806-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wqm2mq
title: Occurrence Download

description: A dataset containing 5384 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((17.14241 36.38339,18.88545 34.54634,45.23612 27.97932,48.61967 31.62612,50.46524 41.40707,39.49434 52.04058,22.67913 48.70743,16.21963 48.23157,13.04114 46.84734,13.45127 44.92053,18.88545 40.94403,17.14241 36.38339))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus robur L."
 ]
}

 The dataset includes 5384 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031010-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5pukq3
title: Occurrence Download

description: A dataset containing 15434 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Arthropoda, Nematoda, Tardigrada, Rotifera, Annelida, Mollusca, Platyhelminthes)",
 "Geometry POLYGON ((-87.55459 33.085155, -87.552903 32.814554, -87.232433 32.815559, -87.233142 33.08617, -87.55459 33.085155))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 {
 "not" : {
 "CoordinateUncertaintyInMeters" : [
 "is one of (301, 3036, 999, 9999)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 15434 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242291-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25992338
title: All-optical driven soft crawler with complex motion capabilities

description: The emergence of millimeter-scale soft actuators has significantly expanded the potential applications in areas such as search and rescue, drug delivery, and human assistance, due to their high flexibility. Despite these advancements, achieving precise control over the intricate movements of soft crawlers poses a significant challenge. In this study, we have developed an all-optical approach that enables manipulation of propulsive forces by simultaneously modifying the magnitude and direction of friction forces, thereby enabling complex motions of soft actuators. Importantly, the approach is not constrained by specific actuator shapes, and theoretically, any elongated photothermal actuator can be employed. The actuator was designed with an isosceles trapezoid shape, featuring a top width of 2 mm, a bottom width of 4 mm, and a length of 8 mm. Through our manipulation approach, we showcase a proof-of-concept for complex soft robotic motions, including crawling (achieving speeds of up to 2.25 body lengths per minute), turning, avoiding obstacles, handling and transferring objects approximately twice its own weight, and navigating narrow spaces along programmed paths. Our results showcase this all-optical manipulation approach as a promising, yet unexplored tool for the precision and wireless control for the development of advanced soft actuators.
DOI: 10.15468/dl.ahsr9d
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ambystoma rivularis (Taylor, 1940)"
 ]
}

 The dataset includes 88 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242819-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3jszqc
title: Occurrence Download

description: A dataset containing 85522 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Euphausia superba Dana, 1850"
 ]
}

 The dataset includes 85522 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031013-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xbng2p
title: Occurrence Download

description: A dataset containing 111785 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Aedes albopictus (Skuse, 1894)"
 ]
}

 The dataset includes 111785 records from 184 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069413-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9n94qw
title: Occurrence Download

description: A dataset containing 9571 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Arthropoda, Nematoda, Tardigrada, Rotifera, Annelida, Mollusca, Platyhelminthes)",
 "Geometry POLYGON ((-95.369858 39.172098, -95.360847 38.90199, -95.015108 38.908473, -95.022801 39.178643, -95.369858 39.172098))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 {
 "not" : {
 "CoordinateUncertaintyInMeters" : [
 "is one of (301, 3036, 999, 9999)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 9571 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242278-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bxspt6
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Occurrence evidence)",
 "Geometry POLYGON((108.92899 -4.28111,117.79924 -4.58179,118.29731 -2.57184,119.23741 0.70635,120.12981 6.29152,119.27797 7.20991,107.47385 7.20991,108.92899 -4.28111))",
 "HasGeospatialIssue is false",
 "TaxonKey is Shorea johorensis Foxw.",
 "Year 2014-2023"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242834-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jzvskk
title: Occurrence Download

description: A dataset containing 30993 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence)",
 "TaxonKey is Mobula Rafinesque, 1810"
 ]
}

 The dataset includes 30993 records from 278 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011025-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.brczwn
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Strobilanthes urens (B.Heyne ex Roth) J.R.I.Wood"
 ]
}

 The dataset includes 38 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240486-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.58vkvk
title: Occurrence Download

description: A dataset containing 6766 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Arthropoda, Nematoda, Tardigrada, Rotifera, Annelida, Mollusca, Platyhelminthes)",
 "Geometry POLYGON ((-99.440238 47.262613, -99.438017 46.992664, -99.043467 46.993494, -99.043687 47.26345, -99.440238 47.262613))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 {
 "not" : {
 "CoordinateUncertaintyInMeters" : [
 "is one of (301, 3036, 999, 9999)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 6766 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242264-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10569326
title: Forest Aboveground Biomass 2000-2022 for Maryland, USA

description: This dataset provides 30-m resolution maps of estimated forest aboveground biomass (AGB) in the state of Maryland between 2000-2022. This dataset was produced by a novel forest carbon monitoring system which utilizes high resolution remote sensing of contemporary tree cover and canopy height as powerful constraints within a process-based ecosystem model to reconstruct the spatial and temporal dynamics in AGB while considering impacts of spatially and temporally transient meteorology, elevated CO2 and disturbance. This dataset reports AGB in unit of kg C/m2.

This forest carbon monitoring system was built on a process-based ecosystem model called Ecosystem Demography (ED) (Hurtt et al 1998; Moorcroft et al 2001; Ma et al 2022), which can simulate plant dynamics including growth, mortality, and reproduction; carbon dynamics within the simulated plants; and dynamics of carbon pools in forest ecosystems.

This forest carbon monitoring system ingests transient meteorology from Daymet (Thornton et al 2016) and MERRA2 (Gelaro et al. 2017) and CO2 concentrations from NOAA, remote sensing of forest change from the Global Forest Change (Hansen et al 2013), contemporary tree cover and canopy height from airborne lidar (e.g. Tang et al. 2021) and aerial imagery from National Agriculture Imagery Program (NAIP). More details about the system development can be found in Hurtt et al. 2022.

This data is currently utilized in the State of Maryland’s Greenhouse Gas Inventory and is scheduled to be updated at least triennially as part of updates to the State’s inventory. This data is also serves as the basis for calculations within the University of Maryland Peer-Reviewed Offset Protocol for Maryland Reforestation/Afforestation Projects.

For questions and support please contact lma6@umd.edu, rachlamb@umd.edu and gchurtt@umd.edu.

This work was supported by contract from the Maryland Department of the Environment. We also gratefully acknowledge the support of NASA Carbon Monitoring System project (80NSSC21K1059).
DOI: 10.5281/zenodo.10569327
title: Forest Aboveground Biomass 2000-2022 for Maryland, USA

description: This dataset provides 30-m resolution maps of estimated forest aboveground biomass (AGB) in the state of Maryland between 2000-2022. This dataset was produced by a novel forest carbon monitoring system which utilizes high resolution remote sensing of contemporary tree cover and canopy height as powerful constraints within a process-based ecosystem model to reconstruct the spatial and temporal dynamics in AGB while considering impacts of spatially and temporally transient meteorology, elevated CO2 and disturbance. This dataset reports AGB in unit of kg C/m2.

This forest carbon monitoring system was built on a process-based ecosystem model called Ecosystem Demography (ED) (Hurtt et al 1998; Moorcroft et al 2001; Ma et al 2022), which can simulate plant dynamics including growth, mortality, and reproduction; carbon dynamics within the simulated plants; and dynamics of carbon pools in forest ecosystems.

This forest carbon monitoring system ingests transient meteorology from Daymet (Thornton et al 2016) and MERRA2 (Gelaro et al. 2017) and CO2 concentrations from NOAA, remote sensing of forest change from the Global Forest Change (Hansen et al 2013), contemporary tree cover and canopy height from airborne lidar (e.g. Tang et al. 2021) and aerial imagery from National Agriculture Imagery Program (NAIP). More details about the system development can be found in Hurtt et al. 2022.

This data is currently utilized in the State of Maryland’s Greenhouse Gas Inventory and is scheduled to be updated at least triennially as part of updates to the State’s inventory. This data is also serves as the basis for calculations within the University of Maryland Peer-Reviewed Offset Protocol for Maryland Reforestation/Afforestation Projects.

For questions and support please contact lma6@umd.edu, rachlamb@umd.edu and gchurtt@umd.edu.

This work was supported by contract from the Maryland Department of the Environment. We also gratefully acknowledge the support of NASA Carbon Monitoring System project (80NSSC21K1059).
DOI: 10.15468/dl.g22pfn
title: Occurrence Download

description: A dataset containing 2520 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Beetles from old forest (Quercus robur) at Larvik"
 ]
}

 The dataset includes 2520 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011089-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v472r2
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium aphanum Üksip"
 ]
}

 The dataset includes 67 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242828-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.