cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p97ubenk
title: Daily Basin Characterization Model (BCM) archive for Humboldt Bay/Eel River

description: This data set includes: 1) A shapefile of the Humboldt Bay Eel River (HBER) 13 sub watersheds, 2) A shape file of the streamflow gages used in calibration, and 3) Daily Basin Characterization Model (BCM) model climate inputs (minimum and maximum air temperature, precipitation, and potential evapotranspiration) and outputs of recharge and runoff for the year 2010 used to develop streamflow estimates at 12 gage locations.
DOI: 10.5281/zenodo.6619878
title: Edge effects on decomposition in Sphagnum bogs

description: Dataset from Peatland decomposition study of edge effects (laggs). Data collected in 2021. Tea Bag Index decomposition and plant composition in Swedish peatlands.
DOI: 10.6084/m9.figshare.20101664.v3
title: A BioNano optical mapping-assisted chromosomal genome assembly of Diospyros oleifera

description: <strong>A BioNano optical mapping-assisted chromosomal genome assembly of </strong><em><strong>Diospyros oleifera</strong></em>
DOI: 10.5281/zenodo.6970603
title: Width area slope data, valley bottom polygons and width measurements

description: This link contains: 1. "Sections_raw_data_resubmission.xlsx" - An excel file with 13 sheets. 12 sheets refer to the valley sections analyzed in the study, and one refers to the channel width data explored in valley 12. 2. kml shapefiles of the valley bottom polygons before and after manual editing 3. kml shapefiles of the width measuraments
DOI: 10.17188/1205255
title: Materials Data on Dy3Co11B4 by Materials Project

description: Dy3Co11B4 crystallizes in the hexagonal P6/mmm space group. The structure is three-dimensional. there are two inequivalent Dy sites. In the first Dy site, Dy is bonded in a 12-coordinate geometry to twelve Co and six equivalent B atoms. There are six shorter (2.86 Å) and six longer (2.95 Å) Dy–Co bond lengths. All Dy–B bond lengths are 2.90 Å. In the second Dy site, Dy is bonded in a 6-coordinate geometry to six equivalent Co atoms. All Dy–Co bond lengths are 2.90 Å. There are three inequivalent Co sites. In the first Co site, Co is bonded in a distorted square co-planar geometry to four equivalent Dy and four equivalent B atoms. All Co–B bond lengths are 2.06 Å. In the second Co site, Co is bonded in a distorted L-shaped geometry to two equivalent Dy, two equivalent Co, and two equivalent B atoms. Both Co–Co bond lengths are 2.45 Å. Both Co–B bond lengths are 2.04 Å. In the third Co site, Co is bonded in a 12-coordinate geometry to three equivalent Dy and six equivalent Co atoms. B is bonded in a 6-coordinate geometry to three equivalent Dy and six Co atoms.
DOI: 10.25828/7247-6w78
title: Project for Statistics on Living Standards and Development 1993
DOI: 10.5281/zenodo.3621223
title: Paper Repository and References for "Early software defect prediction: A systematic map and review"

description: Context: Software defect prediction is a trending research topic, and a wide variety of the published papers focus on coding phase or after. A limited number of papers, however, includes the prior (early) phases of the software development lifecycle (SDLC).<br> Objective: The goal of this study is to obtain a general view of the characteristics and usefulness of Early Software Defect Prediction (ESDP) models reported in scientific literature. <br> Method: A systematic mapping and systematic literature review study has been conducted. We searched for the studies reported between 2000 and 2016. We reviewed 52 studies and analyzed the trend and demographics, maturity of state-of-research, in-depth characteristics, success and benefits of ESDP models. <br> Results: We found that categorical models that rely on requirement and design phase metrics, and few continuous models including metrics from requirements phase are very successful. We also found that most studies reported qualitative benefits of using ESDP models.<br> Conclusion: We have highlighted the most preferred prediction methods, metrics, datasets and performance evaluation methods, as well as the addressed SDLC phases. We expect the results will be useful for software teams by guiding them to use early predictors effectively in practice, and for researchers in directing their future efforts.
description: To ensure transparency of our work, we have made the entire repository of the primary studies available.
description: {"references": ["R. \u00d6zak\u0131nc\u0131 and A. Tarhan, \"Early software defect prediction: A systematic map and review,\" J. Syst. Softw., vol. 144, pp. 216\u2013239, 2018. https://doi.org/10.1016/j.jss.2018.06.025."]}
DOI: 10.5281/zenodo.3889720
title: CL-Windcon high fidelity SOWFA simulations dataset

description: This document presents a description and a guideline for using the CL-Windcon project high fidelity SOWFA computations data sets. CL-Windcon project (Closed Loop Wind Farm Control) is a H2020 EU funded projects that brings up with new innovative ways of focusing the design and operation of wind farms, as it tries to put light into the wind farm closed-loop control paradigm, enhancing the understanding and modelling of the flow dynamics inside the wind farm, in order to simultaneously improve the efficiency and reliability and therefore reducing the cost of energy. More information about the project can be found at https://www.clwindcon.eu . This SOWFA dataset contains the computations carried out with SOWFA within the CL-Windcon project for creating a public database that could be useful to adjust the wakes of the engineering models. The dataset is stored at an FTP repository owned by CENER. The data set is open access under requirement. To get access to the data, please send an email to clwindconftp@cener.com with the title "Cl-Windcon FTP data access request".
DOI: 10.5281/zenodo.5117703
title: GWTC-2.1: Deep Extended Catalog of Compact Binary Coalescences Observed by LIGO and Virgo During the First Half of the Third Observing Run - Parameter Estimation Data Release

description: Data release containing posterior samples and skyMaps for the GWTC-2.1 project from the LIGO/Virgo collaboration Accompanying paper is available at dcc.ligo.org/LIGO-P2100063/public.
description: LIGO Laboratory and Advanced LIGO are funded by the United States National Science Foundation (NSF) as well as the Science and Technology Facilities Council (STFC) of the United Kingdom, the Max-Planck-Society (MPS), and the State of Niedersachsen/Germany for support of the construction of Advanced LIGO and construction and operation of the GEO600 detector. Additional support for Advanced LIGO was provided by the Australian Research Council. Virgo is funded, through the European Gravitational Observatory (EGO), by the French Centre National de Recherche Scientifique (CNRS), the Italian Istituto Nazionale di Fisica Nucleare (INFN) and the Dutch Nikhef, with contributions by institutions from Belgium, Germany, Greece, Hungary, Ireland, Japan, Monaco, Poland, Portugal, Spain.
DOI: 10.5281/zenodo.6542540
title: Only Time Will Tell

description: Those are the results of our simulation https://github.com/michaeldorner/only-time-will-tell
DOI: 10.5281/zenodo.6829082
title: Fast Intratumor Heterogeneity Inference from Single-Cell Sequencing Data (simulated data - Extended Data Figures)

description: This data repository contains simulated data used for benchmarking HUNTRESS against the existing alternative tools. Results of the benchmarking are shown in Extended Data Figures 1-10 of the paper "Fast Intratumor Heterogeneity Inference from Single-Cell Sequencing Data" (to appear in Nature Computational Science).
description: {"references": ["Mehrabadi, Farid Rashidi, et al. \"Profiles of expressed mutations in single cells reveal subclonal expansion patterns and therapeutic impact of intratumor heterogeneity.\" bioRxiv (2021).", "Ross, Edith M., and Florian Markowetz. \"OncoNEM: inferring tumor evolution from single-cell sequencing data.\" Genome biology 17.1 (2016): 1-14.", "Malikic, Salem, et al. \"Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data.\" Nature communications 10.1 (2019): 1-12."]}
DOI: 10.6084/m9.figshare.21069775
title: Supplementary Material for: Supplemental Oxygen Treats Periodic Breathing without Effects on Sleep in Late-Preterm Infants

description: <b><i>Background:</i></b> The effect of supplemental oxygen on sleep has not been studied in preterm infants. <b><i>Methods:</i></b> We studied 18 stable late-preterm infants with observed periodic breathing at a median gestational age of 36 weeks. Polysomnography was performed on room air and on 25% oxygen-enriched ambient air. <b><i>Results:</i></b> Supplemental oxygen did not affect sleep stage distribution, sleep efficiency, the frequency of sleep stage transitions, the appearance of rapid-eye movement (REM) sleep periods, or the high number of spontaneous arousals. The percentage in periodic breathing out of total sleep time decreased from 10% (interquartile range [IQR] 5–9%) on room air to 1% (IQR 0–3%) (<i>p</i> &lt; 0.001) on supplemental oxygen. Also, the number of central apneas decreased from 48 (IQR 32–68) to 23 (IRQ 15–32) per hour (<i>p</i> &lt; 0.001), and the number of oxygen desaturations of a minimum 3% from 38 (IQR 29–74) to 10 (IQR 5–24) per hour (<i>p</i> &lt; 0.001). On room air in non-REM sleep, the median end-tidal carbon dioxide values were systematically lower during periodic breathing at 5.1 (IQR 4.6–6.4) kPa than during stable breathing at 5.5 (4.9–5.9) kPa (<i>p</i> &lt; 0.0001). <b><i>Conclusions:</i></b> In late-preterm infants, supplemental oxygen effectively reduces periodic breathing and the number of oxygen desaturations while having no significant effect on sleep. The results support the importance of carotid body over-reactivity on the genesis of periodic breathing in preterm infants.
DOI: 10.17188/1267087
title: Materials Data on Pr3Co11B4 by Materials Project

description: Pr3Co11B4 crystallizes in the hexagonal P6/mmm space group. The structure is three-dimensional. there are two inequivalent Pr sites. In the first Pr site, Pr is bonded in a 12-coordinate geometry to two Pr, twelve Co, and six equivalent B atoms. There are one shorter (3.10 Å) and one longer (3.32 Å) Pr–Pr bond lengths. There are six shorter (2.90 Å) and six longer (3.01 Å) Pr–Co bond lengths. All Pr–B bond lengths are 2.98 Å. In the second Pr site, Pr is bonded in a 6-coordinate geometry to two equivalent Pr and six equivalent Co atoms. All Pr–Co bond lengths are 2.98 Å. There are three inequivalent Co sites. In the first Co site, Co is bonded in a distorted square co-planar geometry to four equivalent Pr and four equivalent B atoms. All Co–B bond lengths are 2.08 Å. In the second Co site, Co is bonded in a distorted L-shaped geometry to two equivalent Pr, two equivalent Co, and two equivalent B atoms. Both Co–Co bond lengths are 2.49 Å. Both Co–B bond lengths are 2.05 Å. In the third Co site, Co is bonded in a 12-coordinate geometry to three equivalent Pr and six equivalent Co atoms. B is bonded in a 6-coordinate geometry to three equivalent Pr and six Co atoms.
DOI: 10.5066/f7m044mf
title: QUASHNET SPAWN HESS CHEMICAL DATA

description: This data set includes dissolved oxygen (DO) and specific conductivity (SpC) data collected in both the surface water and shallow streambed at the Quashnet River, Mashpee, USA from 2014-16. This data was collected to better understand groundwater discharge to the river and associated brook trout habitat. DO was typically near saturation in surface water and some groundwater, but is reduced in streambed zones that may be influenced by buried peat lenses. SpC was used as an indicator of groundwater flowpath dynamics, and lower values were generally associated with higher DO.
DOI: 10.5281/zenodo.5155990
title: GraphQL: A Systematic Mapping Study - Supplemental Material

description: <strong>GraphQL: A Systematic Mapping Study - Supplemental Material</strong> As supplementary material, we add online appendices to the study, containing: <strong>File</strong> <strong>Description</strong> 01 SMS-Study-Identification.xlsx Study identification process dataset 02 SMS-GraphQL-Primary-Studies.pdf SMS primary study dataset 03 SMS-GraphQL-Data-Extraction.xlsx Dataset of the data extraction from the SMS primary studies <br>
DOI: 10.5281/zenodo.5593270
title: Dataset for the manuscript "Event-triggered STED imaging"

description: Dataset that supports the implementation of the event-triggered STED method and support the findings in the manuscript: "Event-triggered STED imaging" (Jonatan Alvelid, Martina Damenti, Chiara Sgattoni, Ilaria Testa, preprint: https://doi.org/10.1101/2021.10.26.465907). The data files are organized according to the various experiments performed for characterization or application of the method. References to the specific figures in the manuscript that uses the different data is provided in the info file. The scripts provided at https://github.com/jonatanalvelid/etSTEDanalysis (https://doi.org/10.5281/zenodo.6469723) have been used for image and data handling, and image analysis of the here provided dataset.
DOI: 10.5281/zenodo.6607050
title: Reproduction package to "Ultra-sensitive THz Microwave Kinetic Inductance Detectors for future space telescopes"

description: This is a reproduction package to the paper "Ultra-sensitive THz Microwave Kinetic Inductance Detectors for future space telescopes", published in Astronomy and Astrophysics, 665, A17 (2022). It contains the data and code to reproduce the figures in this paper. This version 2 includes minor changes to make figures and code consistent with the published version of the manuscript after review.
DOI: 10.5281/zenodo.6969671
title: Modelled basal melt rate underneath the Antarctic Lambert–Amery glacial system

description: This is the modelled basal melt rates in six experiments using different geothermal heat flux (GHF) maps as forcing for an offline coupling between a forward model and an inverse model. The forward model consists of a thermomechanical steady state model using an improved shallow ice approximation in equilibrium with the subglacial hydrological system. The inverse model is solved using 3D full Stokes model. The six GHF maps are from Martos et al. (2017), Shen et al. (2020), An et al. (2015), Shapiro and Ritzwoller (2004), Purucker (2012) and Li et al. (2021). Each filename includes the family name of the first author of the GHF map that is used. For instance, basal_meltrate_an.nc provides the modelled basal melt rates using An et al. (2015) GHF. Files are provided in netcdf format. The netcdf files have 2D grids only. The unit of modelled basal melt rate is mm/yr. The value outside our modelled domain is given as 9.96921e36. The positive value inside our modelled domain represents basal melt rate, while negative represents basal freeze rate. For more information, please see the following paper that is currently accepted by The Cryosphere: H. Kang et al.: Evaluation of six geothermal heat flux maps for the Antarctic Lambert–Amery glacial system, The Cryosphere, 2022.
DOI: 10.5525/gla.researchdata.1282
title: Pushing the Limits of Remote RF Sensing: Reading Lips Under Face Mask

description: The dataset is about reading lips in a privacy preserving manner. In particular, radio frequency (RF) sensing was used to capture unique channel variation due to lip movements. USRP x300 was utilised equipped with the VERT2450 omnidirectional antenna and HyperLOG 7040 X used for reception and transmission respectively. Further, the same experiment was repeated with a Xethru UWB radar, where doppler frequency shifts due to lip movements are captured. We consider six classes for lip movements. Five vowels (a, e, i, o, u) and one empty class where lips were not moving. We are able to read lips even under face masks. Three subjects 1 male and 2 females participated in the experiments.
DOI: 10.6084/m9.figshare.15067119
title: Interview summary data supporting "Public involvement in pandemic modelling: a qualitative study of Test, Trace and Isolate practices in the UK and implications for modelling"

description: These are transcripts of interviews with 20 members of the UK public, in June-July 2021. The topics covered include attitudes to Test, Trace and Isolate, the costs and barriers for these behaviours, and the perceived impact of vaccines on testing behaviours. The interviews cover public perception of Lateral Flow Devices, PCR testing, and trust in the NHS Test and Trace App.<br>Participants were recruited via this webpage: https://github.com/test-trace-isolate-interviews/public-recruitment<br><br>The topic guide, which was used in these semi-structured interviews, is "Topic guide 1_0 Public.docx".
DOI: 10.6084/m9.figshare.17695382
title: Batrachochytrium salamandrivorans suitability and salamander susceptibility and risk for infection across the US

description: These files contain mostly raster data for the susceptibility and risk of salamanders to <i>Batrachochytrium salamandrivorans</i> (<i>Bsal</i>) infection across the US. They also contain suitability maps of <i>Bsal </i>in Europe and Asia, a list of susceptibility to infection by species, and raster data of salamander richness in the US based on known species ranges. The data is intended to supplement the following publication where details on methodology and interpretation are provided: <br>A spatially explicit risk assessment of salamander populations to <i>Batrachochytrium salamandrivorans </i>in the United States for direction conservation actions. <i>Diversity and Distributions.</i>
DOI: 10.6084/m9.figshare.20528868.v1
title: Environmental and genetic data on 1926 Galium verum ramets sampled in 35 landscapes in NW-Europe

description: This Figshare data-file contains three files which are linked via unique identifiers to reconstruct all the data needed to investigate the impact of green infrastructure on the functional connectivity in the grassland perennial Galium verum in fragmented semi-natural grassland landscapes in 35 landscapes spread across Sweden, Germany and Belgium. RawMicrosatelliteData.txt Genotyped microsatellite data for 9 markers for 1926 sampled individual ramets from the plant species Galium verum, collected across 35 landscapes in Sweden, Germany and Belgium. The dataset is formatted along the Spagedi-software requirements which was used to calculate the genetic diversity metrics. IndividualDescriptor.xlsx Environmental descriptors of 1926 individual ramets of the plant species Galium verum sampled across 35 landscapes in Sweden, Germany and Belgium. Via their unique ID (Ind), they can be linked to their associated genotype and their geographic position as available in RawMicrosatelliteData.txt. The environmental desciptors describe in which country, landscape or element (focal patch [1], stepping stone [4] or linear feature [2 and 3]) the individual was sampled. <br> Landscape_Composition.csv Environmental descriptors including landscape and focal genetic diversity metrics for 35 landscapes across Sweden, Germany and Belgium in which the grassland perennial plant species Galium verum was sampled.<br> Besides the descriptor "Landscape" making it possible to link these descriptors to the individual ramets in RawMicrosatelliteData.txt and IndividualDescriptor.xlsx, environmental descriptors include structural and inferred functional connectivity and various components which make up the green infrastructure, i.e. amount of semi-natural grassland habitat [ha], amount of road infrastructure [m] and the amount of forest or arable cover [ha]. Further landscape information is provided by the descriptors on "Landscape occupancy of Galium verum" and "Restored", informing on the abundance of Galium verum in the landscape surrounding each focal semi-natural grassland patch [0-1] and whether the focal semi-natural grassland patch has been restored [0/1], respectively. <br> Genetic diversity metrics for sampled Galium verum populations include allelic richness, rarified allelic richness and gametic heterozygosity (calculated using Spagedi-software), both for the focal semi-natural grassland central in each landscape as well as for the entire landscape, i.e. the focal patch + its surrounding landscape (r = 1600 m). <br> <br>
DOI: 10.17632/bvrzf2s9j7.6
title: Depression among Pet owners and Non-pet owners: A comparative cross-sectional study in Dhaka, Bangladesh

description: Depression is one of the leading causes of Disability Adjusted Life Years (DALY) calculated for all ages that often begins during teens and continues to affect later years. It is shown that pets can influence a human being psychologically and emotionally, including preventing depression. This study determined the association between keeping household pets and depression. A comparative cross-sectional methodology was followed, and data were drawn using both online and offline approaches. Independent sample t-test and chi-square test were used to compare continuous variables and categorical variables between pet-owners and nonowners. Logistic regression was used to identify an association between pet ownership and depression.  Pet owners were found to be 41% less depressed than nonowners (AOR-0.59 (95% CI: 0.31-1.14). Among other variables, male gender [AOR-3.38 (95% CI: 3.38: 1.50-7.62)], unmarried status [AOR-2.10 (95% CI: 1.05-4.16)], tobacco consumption [AOR-5.27 (95% CI: 1.50-18.53)], physical disability [AOR-5.27 (95% CI: 1.50-18.53)] were significantly and positively associated with depression.
DOI: 10.5281/zenodo.268419
title: Nasa93

description: None with this specific data set. But for older work on similar data, see:
	
		“Validation Methods for Calibrating Software Effort Models”, T. Menzies and D. Port and Z. Chen and J. Hihn and S. Stukes, Proceedings ICSE 2005,http://menzies.us/pdf/04coconut.pdf
		Results:
		
			Given background knowledge on 60 prior projects, a new cost model can be tuned to local data using as little as 20 new projects.
			A very simple calibration method (COCONUT) can achieve PRED(30)=7% or PRED(20)=50% (after 20 projects). These are results seen in 30 repeats of an incremental cross-validation study.
			Two cost models are compared; one based on just lines of code and one using over a dozen “effort multipliers”. Just using lines of code loses 10 to 20 PRED(N) points.
		
		
	
	
	Additional Usage:
	
		“Feature Subset Selection Can Improve Software Cost Estimation Accuracy” Zhihao Chen, Tim Menzies, Dan Port and Barry Boehm Proceedings PROMISE Workshop 2005,http://promise.site.uottawa.ca/proceedings/pdf/1.pdf P02, P03, P04 are used in this paper.
		Results
		
			To the best of our knowledge, this is the first report of applying feature subset selection (FSS) to software effort data.
			FSS can dramatically improve cost estimation.
			T-tests are applied to the results to demonstrate that always in our data sets, removing attributes improves performance without increasing the variance in model behavior.
description: Instances: 93
Attributes: 24
     -15 standard COCOMO-I discrete attributes in the range Very_Low to Extra_High
     -7 others describing the project
     -one lines of code measure
     -one goal field being the actual effort in person months.
DOI: 10.5281/zenodo.5632921
title: WikiPathways Sept 2021 Release - RDF data

description: Archive of the WikiPathways September 2021 RDF data for <em>Homo sapiens</em> as GPMLRDF and WPRDF (.ttl format). The data is licenced under the CCZero waiver.