cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16778575.v1
title: Tibetan Prunus genomes

description: Tibetan Prunus genomes
DOI: 10.15131/shef.data.16732369.v1
title: Metropolis Hastings Calibration Excel Example

description: This spreadsheet is intended as an example to demonstrate how the Metropolis Hastings algorithm can be implemented within microsoft Excel to undertake Bayesian inference. If you are considering programming the Metropolis Hastings algorithm in another language/modelling package this example may be useful for you. This example uses a very simple state transition model (with 3 states) and uses data observations of persons in State B and persons moving to Stage C. This structure and approach can be extended to a larger more complex model and with more parameters and datasets. This spreadsheet may be a useful illustration of the process of the MH algorithm for those considering programming this algorithm in another package. Warning! This example is intended as a rough guide to the process only. For further details consult a statistics reference. Referencing The author has used a similar approach to calibrate a natural history model for colorectal cancer. The methods are published here: Whyte S, Walsh C, Chilcott J. Bayesian Calibration of a Natural History Model with Application to a Population Model for Colorectal Cancer. Medical Decision Making 2011;31:625-641. http://www.ncbi.nlm.nih.gov/pubmed/21127321
DOI: 10.15131/shef.data.16732369
title: Metropolis Hastings Calibration Excel Example

description: This spreadsheet is intended as an example to demonstrate how the Metropolis Hastings algorithm can be implemented within microsoft Excel to undertake Bayesian inference. If you are considering programming the Metropolis Hastings algorithm in another language/modelling package this example may be useful for you. This example uses a very simple state transition model (with 3 states) and uses data observations of persons in State B and persons moving to Stage C. This structure and approach can be extended to a larger more complex model and with more parameters and datasets. This spreadsheet may be a useful illustration of the process of the MH algorithm for those considering programming this algorithm in another package. Warning! This example is intended as a rough guide to the process only. For further details consult a statistics reference. Referencing The author has used a similar approach to calibrate a natural history model for colorectal cancer. The methods are published here: Whyte S, Walsh C, Chilcott J. Bayesian Calibration of a Natural History Model with Application to a Population Model for Colorectal Cancer. Medical Decision Making 2011;31:625-641. http://www.ncbi.nlm.nih.gov/pubmed/21127321
DOI: 10.6084/m9.figshare.16783396
title: 2021_VA_Collection1

description: COLLECTION TITLE:2021_VanciniAurora_Collection1<br>CATEGORY:Financial Economics<br>KEYWORDS:Sustainable finance; Climate change; Sector yield; News index; Sensitive sector; ESG<br>ARTICLE (when using these files, please, cite the following article):Aurora Vancini, Filippo Piccinini, "The impact of climate change news on the performance of the Dow Jones Sector and Industry Indices". 2021.<br>DESCRIPTION OF THE FILES IN THIS COLLECTION:1 - VariablesThis folder contains the spreadsheets with for each regressor in our model separtely downloaded from public websites.2 - Final datasetThis spreadsheet is the complete dataset after having merged the files in the above folder with yields from Investing.com.3 - DJ-panelThis is the R-script containing the model specification and its output.4 - CoefficientsThis spreadsheet contains the results of DeltaMethod for all the coefficients with t-stat, s.e. and significance level.<br>MAIN CONTACTS:Aurora Vancini. Master’s Degree in Economics, University of Bologna, Bologna, Italy. Email: vancini.aurora@gmail.com<br>COPYRIGHT: Copyright (C) 2021, Vancini Aurora (UniBo, Italy, vancini.aurora@gmail.com)All rights reserved, under the:GNU General Public License version 3<br>Redistribution and use of the material, with or without modification, is provided for academic research purpose only. <br>These files are free software; you can redistribute them and/or modify themunder the terms of the GNU General Public License version 3 (or higher)as published by the Free Software Foundation. These files aredistributed WITHOUT ANY WARRANTY; without even the implied warranty ofMERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNUGeneral Public License for more details.
DOI: 10.6084/m9.figshare.16783396.v2
title: 2021_VA_Collection1

description: COLLECTION TITLE:2021_VanciniAurora_Collection1<br>CATEGORY:Financial Economics<br>KEYWORDS:Sustainable finance; Climate change; Sector yield; News index; Sensitive sector; ESG<br>ARTICLE (when using these files, please, cite the following article):Aurora Vancini, Filippo Piccinini, "The impact of climate change news on the performance of the Dow Jones Sector and Industry Indices". 2021.<br>DESCRIPTION OF THE FILES IN THIS COLLECTION:1 - VariablesThis folder contains the spreadsheets with for each regressor in our model separtely downloaded from public websites.2 - Final datasetThis spreadsheet is the complete dataset after having merged the files in the above folder with yields from Investing.com.3 - DJ-panelThis is the R-script containing the model specification and its output.4 - CoefficientsThis spreadsheet contains the results of DeltaMethod for all the coefficients with t-stat, s.e. and significance level.<br>MAIN CONTACTS:Aurora Vancini. Master’s Degree in Economics, University of Bologna, Bologna, Italy. Email: vancini.aurora@gmail.com<br>COPYRIGHT: Copyright (C) 2021, Vancini Aurora (UniBo, Italy, vancini.aurora@gmail.com)All rights reserved, under the:GNU General Public License version 3<br>Redistribution and use of the material, with or without modification, is provided for academic research purpose only. <br>These files are free software; you can redistribute them and/or modify themunder the terms of the GNU General Public License version 3 (or higher)as published by the Free Software Foundation. These files aredistributed WITHOUT ANY WARRANTY; without even the implied warranty ofMERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNUGeneral Public License for more details.
DOI: 10.6084/m9.figshare.16783396.v1
title: 2021_VA_01_Variables

description: COLLECTION TITLE:2021_VanciniAurora_Collection1<br>CATEGORY:Financial Economics<br>KEYWORDS:Sustainable finance; Climate change; Sector yield; News index; Sensitive sector; ESG<br>ARTICLE (when using these files, please, cite the following article):Aurora Vancini, Filippo Piccinini, "The impact of climate change news on the performance of the Dow Jones Sector and Industry Indices". 2021.<br>DESCRIPTION OF THE FILES IN THIS COLLECTION:1 - VariablesThis folder contains the spreadsheets with for each regressor in our model separtely downloaded from public websites.2 - Final datasetThis spreadsheet is the complete dataset after having merged the files in the above folder with yields from Investing.com.3 - DJ-panelThis is the R-script containing the model specification and its output.4 - CoefficientsThis spreadsheet contains the results of DeltaMethod for all the coefficients with t-stat, s.e. and significance level.<br>MAIN CONTACTS:Aurora Vancini. Master’s Degree in Economics, University of Bologna, Bologna, Italy. Email: vancini.aurora@gmail.com<br>COPYRIGHT: Copyright (C) 2021, Vancini Aurora (UniBo, Italy, vancini.aurora@gmail.com)All rights reserved, under the:GNU General Public License version 3<br>Redistribution and use of the material, with or without modification, is provided for academic research purpose only. <br>These files are free software; you can redistribute them and/or modify themunder the terms of the GNU General Public License version 3 (or higher)as published by the Free Software Foundation. These files aredistributed WITHOUT ANY WARRANTY; without even the implied warranty ofMERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNUGeneral Public License for more details.
DOI: 10.6084/m9.figshare.16783426
title: Maternal styles & oxytocin in chimpanzees

description: Datasets and code for analysis of relationship between ecology, maternal life history, maternal condition, offspring characteristics, maternal urinary oxytocin levels and nurturing behaviour<br>
DOI: 10.6084/m9.figshare.16783426.v1
title: Maternal styles & oxytocin in chimpanzees

description: Datasets and code for analysis of relationship between ecology, maternal life history, maternal condition, offspring characteristics, maternal urinary oxytocin levels and nurturing behaviour<br>
DOI: 10.17632/yvvmsz4dkt.1
title: Replication program for "Endogenous Inattention and Risk-Specific Price Underreaction in Corporate Bonds"

description: Replication code and data for paper "Endogenous Inattention and Risk-Specific Price Underreaction in Corporate Bonds" in the Journal of Financial Economics.
DOI: 10.5281/zenodo.5414846
title: Null

description: Null
DOI: 10.5441/001/1.r0h6725k/1
title: Wood stork (Mycteria americana) Southeastern US 2004-2019

description: Picardi S, Frederick PC, Borkhataria RR, Basille M. 2020. Partial migration in a subtropical wading bird in the Southeastern United States. Ecosphere. 11(2):e03054. doi:10.1002/ecs2.3054
description: The function of migration is to allow exploitation of resources whose availability is heterogeneous in space and time. Much effort has been historically directed to studying migration as a response to seasonal, predictable fluctuations in resource availability in temperate species. A deeper understanding of how different migration patterns emerge in response to different patterns of resource variation requires describing migration patterns of species inhabiting less predictable environments, especially in tropical and subtropical areas. We provide the first individual-based, quantitative description of migratory patterns in a subtropical wading bird in the southeastern United States, the wood stork (Mycteria americana). Using GPS tracking data for 64 individuals tracked between 2004 and 2017, we classified migratory behavior at the individual-year level using information theory-based model selection on nonlinear models of net squared displacement. We found that the wood stork population is partially migratory, with 59% of individuals seasonally commuting between winter ranges in Florida and summer ranges elsewhere in the population range (migrants), and 28% remaining in a single area in Florida year-round (residents). Additionally, 13% of storks act as facultative migrants, migrating in some years but not in others. Comparing the distribution of residents and migrants suggests that different migratory strategies might be associated with the use of different or differently distributed resources, possibly including food supplementation from human activities. The existence of facultative migrants shows the potential for plastic change in migratory patterns. Partial migration in wood storks may be an adaptation to high heterogeneity and unpredictability of food resources. We suggest that future research should focus on wading birds as model species for the study of partial migration as an adaptation to heterogeneous and unpredictable environments.
DOI: 10.5441/001/1.r0h6725k/2
title: Wood stork (Mycteria americana) Southeastern US 2004-2019-reference-data

description: Picardi S, Frederick PC, Borkhataria RR, Basille M. 2020. Partial migration in a subtropical wading bird in the Southeastern United States. Ecosphere. 11(2):e03054. doi:10.1002/ecs2.3054
description: The function of migration is to allow exploitation of resources whose availability is heterogeneous in space and time. Much effort has been historically directed to studying migration as a response to seasonal, predictable fluctuations in resource availability in temperate species. A deeper understanding of how different migration patterns emerge in response to different patterns of resource variation requires describing migration patterns of species inhabiting less predictable environments, especially in tropical and subtropical areas. We provide the first individual-based, quantitative description of migratory patterns in a subtropical wading bird in the southeastern United States, the wood stork (Mycteria americana). Using GPS tracking data for 64 individuals tracked between 2004 and 2017, we classified migratory behavior at the individual-year level using information theory-based model selection on nonlinear models of net squared displacement. We found that the wood stork population is partially migratory, with 59% of individuals seasonally commuting between winter ranges in Florida and summer ranges elsewhere in the population range (migrants), and 28% remaining in a single area in Florida year-round (residents). Additionally, 13% of storks act as facultative migrants, migrating in some years but not in others. Comparing the distribution of residents and migrants suggests that different migratory strategies might be associated with the use of different or differently distributed resources, possibly including food supplementation from human activities. The existence of facultative migrants shows the potential for plastic change in migratory patterns. Partial migration in wood storks may be an adaptation to high heterogeneity and unpredictability of food resources. We suggest that future research should focus on wading birds as model species for the study of partial migration as an adaptation to heterogeneous and unpredictable environments.
DOI: 10.15468/cxmvns
title: Two new species of Lagenandra (Araceae) from the Wet Zone of Sri Lanka

description: This dataset contains the digitized treatments in Plazi based on the original journal article Madola, Indrakheela, Yakandawala, Deepthi, Yakandawala, Kapila, Karunaratne, Senani (2021): Two new species of Lagenandra (Araceae) from the Wet Zone of Sri Lanka. Phytotaxa 522 (3): 187-199, DOI: 10.11646/phytotaxa.522.3.2, URL: http://dx.doi.org/10.11646/phytotaxa.522.3.2
DOI: 10.5281/zenodo.3673893
title: Capture-recapture histories used in our paper "High long-term survival and asymmetric movements in a reintroduced metapopulation of cinereous vultures" published by Ecosphere

description: These three datasets correspond to the capture-recapture histories used in the E-surge software (in the HEADED format) for both population models (Capture_recapture_histories_ALPS.txt for the Alps and Capture_recapture_histories_CAUSSES.txt for the Causses) and the metapopulation model (Capture_recapture_histories_METAPOPULATION.txt). Columns descriptor: H:O1 to H:O25 correspond to each occasion (i.e. year) S: correspond to the sample size (i.e. associated number of animals) RC: correspond to the Right Censoring ( -1 if the animal is removed at the last capture or 0 if no right censoring) $COV:Group correspond to the group to which the individual belongs Individuals were grouped by age (from the 1<sup>st</sup> year until ≥6<sup>th</sup> years), by release status (wild-born / hacking: released juveniles before fledging / aviary: released immatures, sub-adults or adults), by origin (Causses / Alps) and if a missing ring was replaced. All details for the groups are given in the Appendix B for both population models and in the Appendix C for the metapopulation model.
DOI: 10.5281/zenodo.3673892
title: Capture-recapture histories used in our paper "High long-term survival and asymmetric movements in a reintroduced metapopulation of cinereous vultures" published by Ecosphere

description: These three datasets correspond to the capture-recapture histories used in the E-surge software (in the HEADED format) for both population models (Capture_recapture_histories_ALPS.txt for the Alps and Capture_recapture_histories_CAUSSES.txt for the Causses) and the metapopulation model (Capture_recapture_histories_METAPOPULATION.txt). Columns descriptor: H:O1 to H:O25 correspond to each occasion (i.e. year) S: correspond to the sample size (i.e. associated number of animals) RC: correspond to the Right Censoring ( -1 if the animal is removed at the last capture or 0 if no right censoring) $COV:Group correspond to the group to which the individual belongs Individuals were grouped by age (from the 1<sup>st</sup> year until ≥6<sup>th</sup> years), by release status (wild-born / hacking: released juveniles before fledging / aviary: released immatures, sub-adults or adults), by origin (Causses / Alps) and if a missing ring was replaced. All details for the groups are given in the Appendix B for both population models and in the Appendix C for the metapopulation model.
DOI: 10.5287/bodleian:r5gmr7rjm
title: To subjugate a vampire: part 1
DOI: 10.5281/zenodo.5562389
title: Nomad-FAIR North-Remote-Tool Example Dataset Atom Probe Microscopy

description: Excerpt of a dataset from Huan Zhao, R76-26120-OA<br> https://www.nature.com/articles/s41524-020-00486-1
DOI: 10.5281/zenodo.5562388
title: Nomad-FAIR North-Remote-Tool Example Dataset Atom Probe Microscopy

description: Excerpt of a dataset from Huan Zhao, R76-26120-OA<br> https://www.nature.com/articles/s41524-020-00486-1
DOI: 10.5281/zenodo.5562393
title: test upload

description: .
DOI: 10.5281/zenodo.5562392
title: test upload

description: .
DOI: 10.5281/zenodo.5562366
title: Effect of emodin on lung inflammation and intestinal microbes in Chronic Obstructive Pulmonary Disease

description: <strong>Effect of emodin on lung inflammation and intestinal microbes in Chronic Obstructive Pulmonary Disease</strong>
DOI: 10.5281/zenodo.5562365
title: Effect of emodin on lung inflammation and intestinal microbes in Chronic Obstructive Pulmonary Disease

description: <strong>Effect of emodin on lung inflammation and intestinal microbes in Chronic Obstructive Pulmonary Disease</strong>
DOI: 10.5281/zenodo.5534964
title: Results from Moltres for the CNRS Benchmark

description: Raw data from running the CNRS benchmark with Moltres.
DOI: 10.5281/zenodo.5534963
title: Results from Moltres for the CNRS Benchmark

description: Raw data from running the CNRS benchmark with Moltres.
DOI: 10.5281/zenodo.5469944
title: Null

description: Null
DOI: 10.5281/zenodo.5414845
title: Null

description: Null
DOI: 10.5281/zenodo.5562443
title: Brustiarius solidus AUM 47635 SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5562442
title: Brustiarius solidus AUM 47635 SPAdes preassembly

description: .
DOI: 10.6084/m9.figshare.16634992
title: Risk of infection in adult patients with primary immune thrombocytopenia (ITP): a systematic review

description: Primary immune thrombocytopenia (ITP) is a bleeding disorder characterized by autoimmune destruction and impaired production of platelets. Immunosuppressive drugs are the main treatment and may increase risk of infection. This systematic review included studies incorporating adult patients with primary ITP and infectious outcomes. Studies comparing risk of infection with the general population were included as primary and studies without this comparison were considered secondary. Three primary and 10 secondary studies were included. The main findings: 1-year adjusted relative-risk of infection was 4.5 (95% CI, 3.3–6.1) fold elevated compared to the general population. When comparing splenectomized with non-splenectomized ITP patients, the +1-year adjusted relative-risk of infection was 4.0 (95% CI, 2.8–5.6). The unadjusted 5-year mortality rate-ratio for infection-related deaths was 6.0 (95% CI, 3.0–11.8) in one study, and the hazard ratio was 2.4 (95% CI, 1.0–5.7) for fatal infections in another. This review emphasizes that patients with ITP have increased risk of infection. Since ITP is a benign hematologic disease, it is important to assess the extent and causes of infection in the clinical care and considerations before initiating treatment. More homogeneous studies are needed on this topic.
DOI: 10.6084/m9.figshare.16634992.v1
title: Risk of infection in adult patients with primary immune thrombocytopenia (ITP): a systematic review

description: Primary immune thrombocytopenia (ITP) is a bleeding disorder characterized by autoimmune destruction and impaired production of platelets. Immunosuppressive drugs are the main treatment and may increase risk of infection. This systematic review included studies incorporating adult patients with primary ITP and infectious outcomes. Studies comparing risk of infection with the general population were included as primary and studies without this comparison were considered secondary. Three primary and 10 secondary studies were included. The main findings: 1-year adjusted relative-risk of infection was 4.5 (95% CI, 3.3–6.1) fold elevated compared to the general population. When comparing splenectomized with non-splenectomized ITP patients, the +1-year adjusted relative-risk of infection was 4.0 (95% CI, 2.8–5.6). The unadjusted 5-year mortality rate-ratio for infection-related deaths was 6.0 (95% CI, 3.0–11.8) in one study, and the hazard ratio was 2.4 (95% CI, 1.0–5.7) for fatal infections in another. This review emphasizes that patients with ITP have increased risk of infection. Since ITP is a benign hematologic disease, it is important to assess the extent and causes of infection in the clinical care and considerations before initiating treatment. More homogeneous studies are needed on this topic.
DOI: 10.6084/m9.figshare.16783552.v1
title: Mitogenome

description: In this data set, we will share our team's mitochondrial genome assembly and annotation files, as well as the original sequencing data.
DOI: 10.5287/bodleian:qma2n8eyo
title: To subjugate a vampire: part 2
DOI: 10.6084/m9.figshare.16783552.v2
title: Mitogenome

description: In this data set, we will share our team's mitochondrial genome assembly and annotation files, as well as the original sequencing data.
DOI: 10.6084/m9.figshare.16783552.v3
title: Mitogenome

description: In this data set, we will share our team's mitochondrial genome assembly and annotation files, as well as the original sequencing data.
DOI: 10.5281/zenodo.5510528
title: Data for "Unfolding the Structural Stability of Nanoalloys via a Combination of Symmetry-Constrained Genetic Algorithm and Neural Network Potential"

description: <strong>PtNi_alloy_eam.db</strong> is the dataset (ase.db object) consisting of 55982 intially sampled Pt-Ni alloy structures with EAM energies and forces. <strong>PtNi_alloy_dft.db</strong> is the dataset (ase.db object) consisting of the final 6828 resampled Pt-Ni alloy structures with DFT energies and forces calculated by VASP. This is the training set for the NNP, and could be very useful for fitting other machine learning models. <strong>PtNi_nanoalloy_vertices_nnp.db</strong> is the dataset (ase.db object) consisting of all the vertices (stable structures) on the convex hulls obtained from NNP-based SCGA runs on 36 Pt-Ni nanoalloy systems. The energies are given by the NNP. Additional information such as mixing energy, motif and symmetry axis are also saved in the dataset and can be queried by the 'data' keyword. An xyz format trajectory of these stable structures is also uploaded. All the input files and scripts for hybrid MC-MD simulations, QBC resampling, DFT calculations, NNP training, NNP-based SCGA runs and convex hull analysis are provided in <strong>inputs_and_scripts.zip</strong>.