cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/133317
title: Meteorological Station data collected during research cruise NA114 using a Coastal Weatherpak-2000 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7429427
title: Supplementary Material for: The 12-Word Philadelphia Verbal Learning Test Performances in Older Adults: Brain MRI and Cerebrospinal Fluid Correlates and Regression-Based Normative Data

description: <b><i>Background/Aims:</i></b> This study evaluated neuroimaging and biological correlates, psychometric properties, and regression-based normative data of the 12-word Philadelphia Verbal Learning Test (PVLT), a list-learning test. <b><i>Methods:</i></b> Vanderbilt Memory and Aging Project participants free of clinical dementia and stroke (<i>n</i> = 230, aged 73 ± 7 years) completed a neuropsychological protocol and brain MRI. A subset (<i>n</i> = 111) underwent lumbar puncture for analysis of Alzheimer’s disease (AD) and axonal integrity cerebrospinal fluid (CSF) biomarkers. Regression models related PVLT indices to MRI and CSF biomarkers adjusting for age, sex, race/ethnicity, education, <i>APOE</i>-ε4 carrier status, cognitive status, and intracranial volume (MRI models). Secondary analyses were restricted to participants with normal cognition (NC; <i>n</i> = 127), from which regression-based normative data were generated. <b><i>Results:</i></b> Lower PVLT performances were associated with smaller medial temporal lobe volumes (<i>p</i> &lt; 0.05) and higher CSF tau concentrations (<i>p</i> &lt; 0.04). Among NC, PVLT indices were associated with white matter hyperintensities on MRI and an axonal injury biomarker (CSF neurofilament light; <i>p</i> &lt; 0.03). <b><i>Conclusion:</i></b> The PVLT appears sensitive to markers of neurodegeneration, including temporal regions affected by AD. Conversely, in cognitively normal older adults, PVLT performance seems to relate to white matter disease and axonal injury, perhaps reflecting non-AD pathways to cognitive change. Enhanced normative data enrich the clinical utility of this tool.
DOI: 10.7284/133312
title: Multibeam Echosounder data collected during research cruise NA114 using a Kongsberg EM302 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7429415
title: Supplementary Material for: Developing a Process for Returning Medically Actionable Genomic Variants to Latino Patients in a Federally Qualified Health Center

description: <b><i>Aim:</i></b> To develop a process for returning medically actionable genomic variants to Latino patients receiving care in a Federally Qualified Health Center. <b><i>Methods:</i></b> Prior to recruitment, researchers met with primary care providers to (1) orient clinicians to the project, (2) establish a process for returning actionable and nonactionable results to participants and providers through the electronic health record, and (3) develop a process for offering clinical decision support for follow-up education and care. A Community Advisory Board was engaged to provide input on recruitment strategies and materials for conveying results to participants. Participants in the Sangre Por Salud (Blood for Health) Biobank with hyperlipidemia or colon polyps represented the pool of potentially eligible participants. <b><i>Results:</i></b> A total of 1,621 individuals were invited to participate and 710 agreed to an in- person consenting visit (194 no-showed and 16 declined). Over 12-months, 500 participants were enrolled. Participants were primarily Spanish-speaking (81.6%), female (74.2%), and enrolled because of hyperlipidemia (95.4%). All but 2 participants opted to receive primary (i.e., related to enrollment phenotypes) as well as secondary actionable results. <b><i>Conclusion:</i></b> Efforts to bring precision medicine to community-based health centers serving minority patients may require multilevel engagement activities to include individuals, providers, health systems, and the community.
DOI: 10.6084/m9.figshare.7429442.v1
title: HL-LHC Wakefield Simulations: Flat-top beta*=15cm thermal 8.1cm dipolar v1.2

description: PyHEADTAIL macro-particle simulations (http://github.com/PyCOMPLETE/PyHEADTAIL) of single bunch stability in the High Luminosity LHC at top energy lead to the present data. Head-tail instabilities driven by the machine impedance can seriously degrade the beam quality and even lead to machine protection issues.<br>Here we simulate with smooth approximation optics and recent versions of the complete HL-LHC impedance model at flat-top conditions at an energy of 7TeV. The influence of the different wake terms (dipolar, dipolar + cross-terms, dipolar + cross-terms + quadrupolar), the longitudinal distribution and the different impedance scenarios (with MoGr coated TCTs) are compared. For each case, we scan the linear chromaticity. The transverse feedback is taken into account with an ideal damper model at 50 turns, moreover longitudinal non-linear synchrotron motion is employed while lattice non-linearities (such as detuning with amplitude from octupoles) are not considered.<br>This particular dataset is based on the following parameters:- beta* of 15cm (STABLE beams conditions)<br>- thermal longitudinal distribution at 8.1cm RMS bunch length, <br>- HL-LHC optics v1.2 impedance model with only the dipolar term of the wake function considered<br>
DOI: 10.7284/133313
title: Multibeam Echosounder data collected during research cruise NA114 using a Kongsberg EM302 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7429415.v1
title: Supplementary Material for: Developing a Process for Returning Medically Actionable Genomic Variants to Latino Patients in a Federally Qualified Health Center

description: <b><i>Aim:</i></b> To develop a process for returning medically actionable genomic variants to Latino patients receiving care in a Federally Qualified Health Center. <b><i>Methods:</i></b> Prior to recruitment, researchers met with primary care providers to (1) orient clinicians to the project, (2) establish a process for returning actionable and nonactionable results to participants and providers through the electronic health record, and (3) develop a process for offering clinical decision support for follow-up education and care. A Community Advisory Board was engaged to provide input on recruitment strategies and materials for conveying results to participants. Participants in the Sangre Por Salud (Blood for Health) Biobank with hyperlipidemia or colon polyps represented the pool of potentially eligible participants. <b><i>Results:</i></b> A total of 1,621 individuals were invited to participate and 710 agreed to an in- person consenting visit (194 no-showed and 16 declined). Over 12-months, 500 participants were enrolled. Participants were primarily Spanish-speaking (81.6%), female (74.2%), and enrolled because of hyperlipidemia (95.4%). All but 2 participants opted to receive primary (i.e., related to enrollment phenotypes) as well as secondary actionable results. <b><i>Conclusion:</i></b> Efforts to bring precision medicine to community-based health centers serving minority patients may require multilevel engagement activities to include individuals, providers, health systems, and the community.
DOI: 10.6084/m9.figshare.7429400
title: HL-LHC Wakefield Simulations: 7TeV STABLE conditions

description: PyHEADTAIL macro-particle simulations (http://github.com/PyCOMPLETE/PyHEADTAIL) of single bunch stability in the High Luminosity LHC at top energy lead to the present data. Head-tail instabilities driven by the machine impedance can seriously degrade the beam quality and even lead to machine protection issues.<br>Here we simulate with smooth approximation optics and recent versions of the complete HL-LHC impedance model at flat-top conditions at an energy of 7TeV. The influence of the different wake terms (dipolar, dipolar + cross-terms, dipolar + cross-terms + quadrupolar), the longitudinal distribution (thermal and q=3/5-Gaussian) and the different impedance scenarios (without MoGr coated TCTs yet) are compared. For each case, we scan the linear chromaticity. The transverse feedback is taken into account with an ideal damper model at 50 turns. Longitudinal non-linear synchrotron motion is employed. Lattice non-linearities (such as detuning with amplitude from octupoles) are not considered. <br><br>Here we consider STABLE conditions, i.e. the impedance model for fully squeezed beta*=15cm at IP1 and IP5.<br>
DOI: 10.7284/133314
title: Singlebeam Echosounder data collected during research cruise NA114 using a Knudsen 3260 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133310
title: SSV (Sound Speed Velocimeter) data collected during research cruise NA114 using a AML SVXchange instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7429400.v1
title: HL-LHC Wakefield Simulations

description: PyHEADTAIL macro-particle simulations (http://github.com/PyCOMPLETE/PyHEADTAIL) of single bunch stability in the High Luminosity LHC at top energy lead to the present data. Head-tail instabilities driven by the machine impedance can seriously degrade the beam quality and even lead to machine protection issues.<br>Here we simulate with smooth approximation optics and recent versions of the complete HL-LHC impedance model at flat-top conditions at an energy of 7TeV. The influence of the different wake terms (dipolar, dipolar + cross-terms, dipolar + cross-terms + quadrupolar), the longitudinal distribution and the different impedance scenarios (with MoGr coated TCTs) are compared. For each case, we scan the linear chromaticity. The transverse feedback is taken into account with an ideal damper model at 50 turns, moreover longitudinal non-linear synchrotron motion is employed while lattice non-linearities (such as detuning with amplitude from octupoles) are not considered.<br>This particular dataset is based on the following parameters:<br>- beta* of 15cm (STABLE beams conditions)- thermal longitudinal distribution at 8.1cm RMS bunch length, <br>- pre-HL-LHC-optics-v1.2 impedance model with only the dipolar term of the wake function considered<br>
DOI: 10.6084/m9.figshare.7429400.v3
title: HL-LHC Wakefield Simulations: 7TeV STABLE conditions

description: PyHEADTAIL macro-particle simulations (http://github.com/PyCOMPLETE/PyHEADTAIL) of single bunch stability in the High Luminosity LHC at top energy lead to the present data. Head-tail instabilities driven by the machine impedance can seriously degrade the beam quality and even lead to machine protection issues.<br>Here we simulate with smooth approximation optics and recent versions of the complete HL-LHC impedance model at flat-top conditions at an energy of 7TeV. The influence of the different wake terms (dipolar, dipolar + cross-terms, dipolar + cross-terms + quadrupolar), the longitudinal distribution (thermal and q=3/5-Gaussian) and the different impedance scenarios (without MoGr coated TCTs yet) are compared. For each case, we scan the linear chromaticity. The transverse feedback is taken into account with an ideal damper model at 50 turns. Longitudinal non-linear synchrotron motion is employed. Lattice non-linearities (such as detuning with amplitude from octupoles) are not considered. <br><br>Here we consider STABLE conditions, i.e. the impedance model for fully squeezed beta*=15cm at IP1 and IP5.<br>
DOI: 10.7284/133323
title: Expendable Probe data collected during research cruise NA115 using a Sippican MK21 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7429400.v2
title: HL-LHC Wakefield Simulations

description: PyHEADTAIL macro-particle simulations (http://github.com/PyCOMPLETE/PyHEADTAIL) of single bunch stability in the High Luminosity LHC at top energy lead to the present data. Head-tail instabilities driven by the machine impedance can seriously degrade the beam quality and even lead to machine protection issues.<br>Here we simulate with smooth approximation optics and recent versions of the complete HL-LHC impedance model at flat-top conditions at an energy of 7TeV. The influence of the different wake terms (dipolar, dipolar + cross-terms, dipolar + cross-terms + quadrupolar), the longitudinal distribution (thermal and q=3/5-Gaussian) and the different impedance scenarios (without MoGr coated TCTs yet) are compared. For each case, we scan the linear chromaticity. The transverse feedback is taken into account with an ideal damper model at 50 turns. Longitudinal non-linear synchrotron motion is employed. Lattice non-linearities (such as detuning with amplitude from octupoles) are not considered.
DOI: 10.7284/133319
title: INS (Inertial Navigation System) data collected during research cruise NA115 using a Kongsberg Seatex MRU-5 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133324
title: INS (Inertial Navigation System) data collected during research cruise NA115 using a Kongsberg Seapath 330+ instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133325
title: Meteorological Station data collected during research cruise NA115 using a Coastal Weatherpak-2000 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133320
title: Multibeam Echosounder data collected during research cruise NA115 using a Kongsberg EM302 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133321
title: Multibeam Echosounder data collected during research cruise NA115 using a Kongsberg EM302 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7429298
title: Additional file 15: of A phylogenetic framework of the legume genus Aeschynomene for comparative genetic analysis of the Nod-dependent and Nod-independent symbioses

description: Figure S12. Ancestral state reconstruction of the ability to nodulate with the photosynthetic Bradyrhizobium strain ORS278 in the genus Aeschynomene and allied genera. Ancestral state reconstruction was estimated in SIMMAP software using the 50% majority-rule topology obtained by Bayesian analysis of the combined ITS + matK sequences. Data on nodulation with ORS278 come from the present analysis and pertinent previously published data. Ability or not to nodulate with ORS278 is indicated by different colors. (XLSX 16 kb) (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7429301
title: Additional file 16: of A phylogenetic framework of the legume genus Aeschynomene for comparative genetic analysis of the Nod-dependent and Nod-independent symbioses

description: Table S4. A. americana and A. villosa accessions used for the GBS analysis, their origin and characteristics. (XLSX 16 kb)
DOI: 10.7284/133322
title: Singlebeam Echosounder data collected during research cruise NA115 using a Knudsen 3260 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7429298.v1
title: Additional file 15: of A phylogenetic framework of the legume genus Aeschynomene for comparative genetic analysis of the Nod-dependent and Nod-independent symbioses

description: Figure S12. Ancestral state reconstruction of the ability to nodulate with the photosynthetic Bradyrhizobium strain ORS278 in the genus Aeschynomene and allied genera. Ancestral state reconstruction was estimated in SIMMAP software using the 50% majority-rule topology obtained by Bayesian analysis of the combined ITS + matK sequences. Data on nodulation with ORS278 come from the present analysis and pertinent previously published data. Ability or not to nodulate with ORS278 is indicated by different colors. (XLSX 16 kb) (XLSX 11 kb)
DOI: 10.7284/133318
title: SSV (Sound Speed Velocimeter) data collected during research cruise NA115 using a AML SVXchange instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7429295
title: Additional file 14: of A phylogenetic framework of the legume genus Aeschynomene for comparative genetic analysis of the Nod-dependent and Nod-independent symbioses

description: Figure S11. Ancestral state reconstruction of the ability to nodulate with the photosynthetic Bradyrhizobium strains in the genus Aeschynomene and allied genera. Ancestral state reconstruction was estimated in SIMMAP software using the 50% majority-rule topology obtained by Bayesian analysis of the combined ITS + matK sequences. Data on nodulation with photosynthetic Bradyrhizobium strains come from the present analysis and pertinent previously published data. Nodulation with photosynthetic Bradyrhizobium strains is considered positive only if reported as occurring naturally or being efficient in vitro. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7429295.v1
title: Additional file 14: of A phylogenetic framework of the legume genus Aeschynomene for comparative genetic analysis of the Nod-dependent and Nod-independent symbioses

description: Figure S11. Ancestral state reconstruction of the ability to nodulate with the photosynthetic Bradyrhizobium strains in the genus Aeschynomene and allied genera. Ancestral state reconstruction was estimated in SIMMAP software using the 50% majority-rule topology obtained by Bayesian analysis of the combined ITS + matK sequences. Data on nodulation with photosynthetic Bradyrhizobium strains come from the present analysis and pertinent previously published data. Nodulation with photosynthetic Bradyrhizobium strains is considered positive only if reported as occurring naturally or being efficient in vitro. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7429292
title: Additional file 13: of A phylogenetic framework of the legume genus Aeschynomene for comparative genetic analysis of the Nod-dependent and Nod-independent symbioses

description: Figure S10. Ancestral state reconstruction of the aerial stem nodulation ability in the genus Aeschynomene and allied genera. Ancestral state reconstruction was estimated in SIMMAP software using the 50% majority-rule topology obtained by Bayesian analysis of the combined ITS + matK sequences. Data on the occurrence of stem nodulation come from pertinent previously published data. Occurrence or not of stem nodulation is indicated by different colors. (XLSX 15 kb)
DOI: 10.7284/133331
title: Expendable Probe data collected during research cruise NA116 using a Sippican MK21 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7429292.v1
title: Additional file 13: of A phylogenetic framework of the legume genus Aeschynomene for comparative genetic analysis of the Nod-dependent and Nod-independent symbioses

description: Figure S10. Ancestral state reconstruction of the aerial stem nodulation ability in the genus Aeschynomene and allied genera. Ancestral state reconstruction was estimated in SIMMAP software using the 50% majority-rule topology obtained by Bayesian analysis of the combined ITS + matK sequences. Data on the occurrence of stem nodulation come from pertinent previously published data. Occurrence or not of stem nodulation is indicated by different colors. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7429301.v1
title: Additional file 16: of A phylogenetic framework of the legume genus Aeschynomene for comparative genetic analysis of the Nod-dependent and Nod-independent symbioses

description: Table S4. A. americana and A. villosa accessions used for the GBS analysis, their origin and characteristics. (XLSX 16 kb)
DOI: 10.7284/133327
title: INS (Inertial Navigation System) data collected during research cruise NA116 using a Kongsberg Seatex MRU-5 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133332
title: INS (Inertial Navigation System) data collected during research cruise NA116 using a Kongsberg Seapath 330+ instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133333
title: Meteorological Station data collected during research cruise NA116 using a Coastal Weatherpak-2000 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7429262
title: Additional file 7: of Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification

description: The list of shared genes between OsCam1–1 co-expressed gene obtaining from STRING and DEGs affected by OsCam1–1 overexpression from RNA-Seq result. This list contains locus number and annotation of the genes. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7429259
title: Additional file 6: of Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification

description: The list of OsCam1â 1 co-expressed DEGs obtaining from STRING (Excel file). This list contains locus number and annotation of the genes. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.7429262.v1
title: Additional file 7: of Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification

description: The list of shared genes between OsCam1–1 co-expressed gene obtaining from STRING and DEGs affected by OsCam1–1 overexpression from RNA-Seq result. This list contains locus number and annotation of the genes. (XLSX 12 kb)
DOI: 10.7284/133328
title: Multibeam Echosounder data collected during research cruise NA116 using a Kongsberg EM302 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7429259.v1
title: Additional file 6: of Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification

description: The list of OsCam1â 1 co-expressed DEGs obtaining from STRING (Excel file). This list contains locus number and annotation of the genes. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.7429244
title: Additional file 1: of Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification

description: The DEG lists grouped by HT salt-responsive DEG, LT salt-responsive DEG, HT DEG, LT DEG and salt-responsive DEG. This list contains locus number and annotation of the genes. (XLSX 2043 kb)
DOI: 10.7284/133329
title: Multibeam Echosounder data collected during research cruise NA116 using a Kongsberg EM302 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7429244.v1
title: Additional file 1: of Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification

description: The DEG lists grouped by HT salt-responsive DEG, LT salt-responsive DEG, HT DEG, LT DEG and salt-responsive DEG. This list contains locus number and annotation of the genes. (XLSX 2043 kb)