cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20080977
title: Additional file 5 of Integrated genomic analyses of acral and mucosal melanomas nominate novel driver genes

description: Additional file 5: Table S4. The copy number data for all samples.
DOI: 10.6084/m9.figshare.20080983
title: Additional file 6 of Integrated genomic analyses of acral and mucosal melanomas nominate novel driver genes

description: Additional file 6: Table S5. The output of Delly2 for WGS samples.
DOI: 10.6084/m9.figshare.20080983.v1
title: Additional file 6 of Integrated genomic analyses of acral and mucosal melanomas nominate novel driver genes

description: Additional file 6: Table S5. The output of Delly2 for WGS samples.
DOI: 10.6084/m9.figshare.20080989.v1
title: Additional file 8 of Integrated genomic analyses of acral and mucosal melanomas nominate novel driver genes

description: Additional file 8: Table S7. All non-silent mutations from PTPRJ, TYRP1 and SLC30A9.
DOI: 10.6084/m9.figshare.20080986.v1
title: Additional file 7 of Integrated genomic analyses of acral and mucosal melanomas nominate novel driver genes

description: Additional file 7: Table S6. The outputs of dNdScv, MutPanning and MutSigCV.
DOI: 10.6084/m9.figshare.20080989
title: Additional file 8 of Integrated genomic analyses of acral and mucosal melanomas nominate novel driver genes

description: Additional file 8: Table S7. All non-silent mutations from PTPRJ, TYRP1 and SLC30A9.
DOI: 10.6084/m9.figshare.20081003
title: Additional file 2 of SCADIE: simultaneous estimation of cell type proportions and cell type-specific gene expressions using SCAD-based iterative estimating procedure

description: Additional file 2 Supplementary Table S1 contains details on the DEGs exclusively identified by SCADIE as discussed in Section ‘SCADIE accurately infers cell proportions and cell type-specific genes in Chronic Obstructive Pulmonary Disease’.
DOI: 10.6084/m9.figshare.20081003.v1
title: Additional file 2 of SCADIE: simultaneous estimation of cell type proportions and cell type-specific gene expressions using SCAD-based iterative estimating procedure

description: Additional file 2 Supplementary Table S1 contains details on the DEGs exclusively identified by SCADIE as discussed in Section ‘SCADIE accurately infers cell proportions and cell type-specific genes in Chronic Obstructive Pulmonary Disease’.
DOI: 10.6084/m9.figshare.20081043
title: Additional file 2 of Hematopoietic differentiation persists in human iPSCs defective in de novo DNA methylation

description: Additional file 2: Tab. S1. Differentially methylated CpGs in iPSC WT versus DNMT3A knockouts. CpG sites that are either 50% hypo- or hypermethylated in DNMT3A exon 2-/-, exon 19-/-, or exon 23-/- iPSCs compared to wildtype iPSCs with associated genes, gene groups, relation to CpG islands, chromosomes, positions, mean beta-values of the knockout and wildtype cells, and the difference in methylation between knockout and wildtype.
DOI: 10.6084/m9.figshare.20081043.v1
title: Additional file 2 of Hematopoietic differentiation persists in human iPSCs defective in de novo DNA methylation

description: Additional file 2: Tab. S1. Differentially methylated CpGs in iPSC WT versus DNMT3A knockouts. CpG sites that are either 50% hypo- or hypermethylated in DNMT3A exon 2-/-, exon 19-/-, or exon 23-/- iPSCs compared to wildtype iPSCs with associated genes, gene groups, relation to CpG islands, chromosomes, positions, mean beta-values of the knockout and wildtype cells, and the difference in methylation between knockout and wildtype.
DOI: 10.6084/m9.figshare.20081046
title: Additional file 3 of Hematopoietic differentiation persists in human iPSCs defective in de novo DNA methylation

description: Additional file 3: Tab. S2. Differentially methylated CpGs in iPSCs versus iMSCs (WT or DNMT3A knockouts). CpG sites that are either 50% hypo- or hypermethylated in DNMT3A wildtype, exon 2-/-, exon 19-/-, or exon 23-/- iMSCs compared to their iPSC counterparts with associated genes, gene groups, relation to CpG islands, chromosomes, positions, mean beta-values of the knockout and wildtype cells, and the difference in methylation between knockout and wildtype.
DOI: 10.6084/m9.figshare.20081046.v1
title: Additional file 3 of Hematopoietic differentiation persists in human iPSCs defective in de novo DNA methylation

description: Additional file 3: Tab. S2. Differentially methylated CpGs in iPSCs versus iMSCs (WT or DNMT3A knockouts). CpG sites that are either 50% hypo- or hypermethylated in DNMT3A wildtype, exon 2-/-, exon 19-/-, or exon 23-/- iMSCs compared to their iPSC counterparts with associated genes, gene groups, relation to CpG islands, chromosomes, positions, mean beta-values of the knockout and wildtype cells, and the difference in methylation between knockout and wildtype.
DOI: 10.6084/m9.figshare.20081049.v1
title: Additional file 4 of Hematopoietic differentiation persists in human iPSCs defective in de novo DNA methylation

description: Additional file 4: Tab. S3. Differentially methylated CpGs in iPSCs versus iHPCs (WT or DNMT3A knockouts). CpG sites that are either 50% hypo- or hypermethylated in DNMT3A wildtype, exon 19-/-, or exon 23-/- iHPCs compared to their iPSC counterparts with associated genes, gene groups, relation to CpG islands, chromosomes, positions, mean beta-values of the knockout and wildtype cells, and the difference in methylation between knockout and wildtype.
DOI: 10.6084/m9.figshare.20081049
title: Additional file 4 of Hematopoietic differentiation persists in human iPSCs defective in de novo DNA methylation

description: Additional file 4: Tab. S3. Differentially methylated CpGs in iPSCs versus iHPCs (WT or DNMT3A knockouts). CpG sites that are either 50% hypo- or hypermethylated in DNMT3A wildtype, exon 19-/-, or exon 23-/- iHPCs compared to their iPSC counterparts with associated genes, gene groups, relation to CpG islands, chromosomes, positions, mean beta-values of the knockout and wildtype cells, and the difference in methylation between knockout and wildtype.
DOI: 10.6084/m9.figshare.20081052
title: Additional file 5 of Hematopoietic differentiation persists in human iPSCs defective in de novo DNA methylation

description: Additional file 5: Tab. S4. Differentially methylated CpGs in iHPC WT versus DNMT3A knockouts. CpG sites that are either 50% hypo- or hypermethylated in DNMT3A exon 19-/-, or exon 23-/- iHPCs compared to wildtype iHPCs with associated genes, gene groups, relation to CpG islands, chromosomes, positions, mean beta-values of the knockout and wildtype cells, and the difference in methylation between knockout and wildtype.
DOI: 10.6084/m9.figshare.20081052.v1
title: Additional file 5 of Hematopoietic differentiation persists in human iPSCs defective in de novo DNA methylation

description: Additional file 5: Tab. S4. Differentially methylated CpGs in iHPC WT versus DNMT3A knockouts. CpG sites that are either 50% hypo- or hypermethylated in DNMT3A exon 19-/-, or exon 23-/- iHPCs compared to wildtype iHPCs with associated genes, gene groups, relation to CpG islands, chromosomes, positions, mean beta-values of the knockout and wildtype cells, and the difference in methylation between knockout and wildtype.
DOI: 10.6084/m9.figshare.20081055
title: Additional file 6 of Hematopoietic differentiation persists in human iPSCs defective in de novo DNA methylation

description: Additional file 6: Tab. S5. RNA-seq data of iHPCs. Genes that are either four-fold downregulated or upregulated (log2 fold change &lt;-2 or &gt;2) in DNMT3A wildtype versus exon 19-/-, wildtype versus exon 23-/-, or exon 19-/- versus exon 23-/- with gene name, base mean, log2 fold change, P-value, adjusted P-value, and read counts per million of knockout and control cells.
DOI: 10.6084/m9.figshare.20081055.v1
title: Additional file 6 of Hematopoietic differentiation persists in human iPSCs defective in de novo DNA methylation

description: Additional file 6: Tab. S5. RNA-seq data of iHPCs. Genes that are either four-fold downregulated or upregulated (log2 fold change &lt;-2 or &gt;2) in DNMT3A wildtype versus exon 19-/-, wildtype versus exon 23-/-, or exon 19-/- versus exon 23-/- with gene name, base mean, log2 fold change, P-value, adjusted P-value, and read counts per million of knockout and control cells.
DOI: 10.15139/s3/bthpwt
title: Apple 30-year Financial Data

description: This dataset contains 30 years of historical fundamentals data of Apple Inc (AAPL). The data includes all 3 financial statements: balance sheets, income statements, cash flow statements. This dataset is provided by Columbia University and Finsheet, a platform which provides stock price in Excel and stock price in Google Sheets.
DOI: 10.6084/m9.figshare.20081039.v1
title: Additional file 1 of DEPDC1B collaborates with GABRD to regulate ESCC progression

description: Additional file 1. Original data.
DOI: 10.6084/m9.figshare.20081039
title: Additional file 1 of DEPDC1B collaborates with GABRD to regulate ESCC progression

description: Additional file 1. Original data.
DOI: 10.6084/m9.figshare.20081093
title: Additional file 1 of Investigation of two different human d-dimer assays in the horse

description: Additional file 1.
DOI: 10.6084/m9.figshare.20081093.v1
title: Additional file 1 of Investigation of two different human d-dimer assays in the horse

description: Additional file 1.
DOI: 10.6084/m9.figshare.20081096
title: Additional file 2 of Investigation of two different human d-dimer assays in the horse

description: Additional file 2.
DOI: 10.6084/m9.figshare.20081088
title: Additional file 1 of AMADAR: a python-based package for large scale prediction of Diels–Alder transition state geometries and IRC path analysis

description: Additional file 1. AMADAR package.
DOI: 10.6084/m9.figshare.20081091
title: Additional file 2 of AMADAR: a python-based package for large scale prediction of Diels–Alder transition state geometries and IRC path analysis

description: Additional file 2. Predicted TS geometries of 1912 DA reactions with imaginary frequency.
DOI: 10.6084/m9.figshare.20081096.v1
title: Additional file 2 of Investigation of two different human d-dimer assays in the horse

description: Additional file 2.
DOI: 10.6084/m9.figshare.20081088.v1
title: Additional file 1 of AMADAR: a python-based package for large scale prediction of Diels–Alder transition state geometries and IRC path analysis

description: Additional file 1. AMADAR package.
DOI: 10.6084/m9.figshare.20081091.v1
title: Additional file 2 of AMADAR: a python-based package for large scale prediction of Diels–Alder transition state geometries and IRC path analysis

description: Additional file 2. Predicted TS geometries of 1912 DA reactions with imaginary frequency.
DOI: 10.6084/m9.figshare.20081097
title: Additional file 4 of AMADAR: a python-based package for large scale prediction of Diels–Alder transition state geometries and IRC path analysis

description: Additional file 4. SMILES of potential Diels-Alder adducts.
DOI: 10.6084/m9.figshare.20081097.v1
title: Additional file 4 of AMADAR: a python-based package for large scale prediction of Diels–Alder transition state geometries and IRC path analysis

description: Additional file 4. SMILES of potential Diels-Alder adducts.
DOI: 10.6084/m9.figshare.20081166.v1
title: Additional file 3 of Maternal age affects equine day 8 embryo gene expression both in trophoblast and inner cell mass

description: Additional file 3: Supplementary Table 1. Sex, diameter, RNA yield and mare age group of each equine embryo at Day 8 post-ovulation. Embryo ID, mare age group, embryo sex and diameter and RNA yield for each embryo are represented in columns while each line represents one individual embryo. OM: old mares; YM: young mares.
DOI: 10.6084/m9.figshare.20081169.v1
title: Additional file 4 of Maternal age affects equine day 8 embryo gene expression both in trophoblast and inner cell mass

description: Additional file 4: Supplementary Table 2. Differential gene analysis using DeSeq2 in ICMandTE of equine embryo at Day 8 post-ovulation. Equine ensemble ID, orthologue human Ensembl ID, Orthologue human Entrez Gene ID, gene description, normalized counts for each sample of ICM and parameters obtained after Deseq2 analysis (log2FoldChange, pvalue and padj (after FDR correction)) of genes expressed in ICM enriched part (before gene expression deconvolution using DeMixT) of OM and YM embryos. Young group was the reference group. ICM: Inner cell mass; OM: old mares; YM: young mares.
DOI: 10.6084/m9.figshare.20081166
title: Additional file 3 of Maternal age affects equine day 8 embryo gene expression both in trophoblast and inner cell mass

description: Additional file 3: Supplementary Table 1. Sex, diameter, RNA yield and mare age group of each equine embryo at Day 8 post-ovulation. Embryo ID, mare age group, embryo sex and diameter and RNA yield for each embryo are represented in columns while each line represents one individual embryo. OM: old mares; YM: young mares.
DOI: 10.6084/m9.figshare.20081169
title: Additional file 4 of Maternal age affects equine day 8 embryo gene expression both in trophoblast and inner cell mass

description: Additional file 4: Supplementary Table 2. Differential gene analysis using DeSeq2 in ICMandTE of equine embryo at Day 8 post-ovulation. Equine ensemble ID, orthologue human Ensembl ID, Orthologue human Entrez Gene ID, gene description, normalized counts for each sample of ICM and parameters obtained after Deseq2 analysis (log2FoldChange, pvalue and padj (after FDR correction)) of genes expressed in ICM enriched part (before gene expression deconvolution using DeMixT) of OM and YM embryos. Young group was the reference group. ICM: Inner cell mass; OM: old mares; YM: young mares.
DOI: 10.6084/m9.figshare.20081172.v1
title: Additional file 5 of Maternal age affects equine day 8 embryo gene expression both in trophoblast and inner cell mass

description: Additional file 5: Supplementary Table 3. Gene set enrichment analysis results on gene expression comparing ICMandTE of embryos from old mares to young mares. Gene Set Enrichment Analysis results (pathway name, GO accession when possible and size, Normalized Enrichment Score, p-value and FDR corrected q-value) for GO biological process and KEGG databases on ICMandTE gene expression table. Young group was the reference group.
DOI: 10.6084/m9.figshare.20081175
title: Additional file 6 of Maternal age affects equine day 8 embryo gene expression both in trophoblast and inner cell mass

description: Additional file 6: Supplementary Table 4. Differential gene analysis using DeSeq2 in DeMixT_ICM_cells of equine embryo at Day 8 post-ovulation. Equine ensemble ID, orthologue human Ensembl ID, Orthologue human Entrez Gene ID, gene description, normalized counts for each sample of ICM and parameters obtained after Deseq2 analysis (log2FoldChange, pvalue and padj (after FDR correction)) of genes expressed in ICM (after gene expression deconvolution of ICMandTE using DeMixT) of OM and YM embryos. Young group was the reference group. ICM: Inner cell mass; OM: old mares; YM: young mares.
DOI: 10.6084/m9.figshare.20081175.v1
title: Additional file 6 of Maternal age affects equine day 8 embryo gene expression both in trophoblast and inner cell mass

description: Additional file 6: Supplementary Table 4. Differential gene analysis using DeSeq2 in DeMixT_ICM_cells of equine embryo at Day 8 post-ovulation. Equine ensemble ID, orthologue human Ensembl ID, Orthologue human Entrez Gene ID, gene description, normalized counts for each sample of ICM and parameters obtained after Deseq2 analysis (log2FoldChange, pvalue and padj (after FDR correction)) of genes expressed in ICM (after gene expression deconvolution of ICMandTE using DeMixT) of OM and YM embryos. Young group was the reference group. ICM: Inner cell mass; OM: old mares; YM: young mares.
DOI: 10.6084/m9.figshare.20081172
title: Additional file 5 of Maternal age affects equine day 8 embryo gene expression both in trophoblast and inner cell mass

description: Additional file 5: Supplementary Table 3. Gene set enrichment analysis results on gene expression comparing ICMandTE of embryos from old mares to young mares. Gene Set Enrichment Analysis results (pathway name, GO accession when possible and size, Normalized Enrichment Score, p-value and FDR corrected q-value) for GO biological process and KEGG databases on ICMandTE gene expression table. Young group was the reference group.
DOI: 10.6084/m9.figshare.20081181
title: Additional file 8 of Maternal age affects equine day 8 embryo gene expression both in trophoblast and inner cell mass

description: Additional file 8: Supplementary Table 6. Gene set enrichment analysis results on gene expression of DeMixT_ICM_cells of embryos from young and old mares. Gene Set Enrichment Analysis results (pathway name, GO accession when possible and size, Normalized Enrichment Score, p-value and FDR corrected q-value) for GO biological process and KEGG databases on DeMixT_ICM_cells gene expression table (after gene expression deconvolution on ICMandTE using DeMixT). Young group was the reference group.
DOI: 10.6084/m9.figshare.20081178
title: Additional file 7 of Maternal age affects equine day 8 embryo gene expression both in trophoblast and inner cell mass

description: Additional file 7: Supplementary Table 5. Differential gene analysis using DeSeq2 in TE_part of equine embryo at Day 8 post-ovulation. Equine ensemble ID, orthologue human Ensembl ID, Orthologue human Entrez Gene ID, gene description, normalized counts for each sample of ICM and parameters obtained after Deseq2 analysis (log2FoldChange, pvalue and padj (after FDR correction)) of genes expressed in TE of OM and YM embryos. Young group was the reference group. TE: Trophoblast; OM: old mares; YM: young mares.
DOI: 10.6084/m9.figshare.20081178.v1
title: Additional file 7 of Maternal age affects equine day 8 embryo gene expression both in trophoblast and inner cell mass

description: Additional file 7: Supplementary Table 5. Differential gene analysis using DeSeq2 in TE_part of equine embryo at Day 8 post-ovulation. Equine ensemble ID, orthologue human Ensembl ID, Orthologue human Entrez Gene ID, gene description, normalized counts for each sample of ICM and parameters obtained after Deseq2 analysis (log2FoldChange, pvalue and padj (after FDR correction)) of genes expressed in TE of OM and YM embryos. Young group was the reference group. TE: Trophoblast; OM: old mares; YM: young mares.
DOI: 10.6084/m9.figshare.20081184
title: Additional file 9 of Maternal age affects equine day 8 embryo gene expression both in trophoblast and inner cell mass

description: Additional file 9: Supplementary Table 7. Gene set enrichment analysis results on gene expression of TE_part of embryos from young and old mares. Gene Set Enrichment Analysis results (pathway name, GO accession when possible and size, Normalized Enrichment Score, p-value and FDR corrected q-value) for GO biological process and KEGG databases on TE_part gene expression table. Young group was the reference group.
DOI: 10.6084/m9.figshare.20081181.v1
title: Additional file 8 of Maternal age affects equine day 8 embryo gene expression both in trophoblast and inner cell mass

description: Additional file 8: Supplementary Table 6. Gene set enrichment analysis results on gene expression of DeMixT_ICM_cells of embryos from young and old mares. Gene Set Enrichment Analysis results (pathway name, GO accession when possible and size, Normalized Enrichment Score, p-value and FDR corrected q-value) for GO biological process and KEGG databases on DeMixT_ICM_cells gene expression table (after gene expression deconvolution on ICMandTE using DeMixT). Young group was the reference group.
DOI: 10.6084/m9.figshare.20081184.v1
title: Additional file 9 of Maternal age affects equine day 8 embryo gene expression both in trophoblast and inner cell mass

description: Additional file 9: Supplementary Table 7. Gene set enrichment analysis results on gene expression of TE_part of embryos from young and old mares. Gene Set Enrichment Analysis results (pathway name, GO accession when possible and size, Normalized Enrichment Score, p-value and FDR corrected q-value) for GO biological process and KEGG databases on TE_part gene expression table. Young group was the reference group.
DOI: 10.6084/m9.figshare.20081021.v1
title: Data from Durkin et al. - Colony fragmentation

description: This data file contains four tabs: Metadata explaining variables and GPS coordinates. A tab with the boldness (latency to move) data for each individual spider. A tab containing data on the aggregation assay, observing the number of spiders present in each subcolony at four time points. A tab containing data on prey capture.
DOI: 10.6084/m9.figshare.20081021
title: Data from Durkin et al. - Colony fragmentation

description: This data file contains four tabs: Metadata explaining variables and GPS coordinates. A tab with the boldness (latency to move) data for each individual spider. A tab containing data on the aggregation assay, observing the number of spiders present in each subcolony at four time points. A tab containing data on prey capture.
DOI: 10.6084/m9.figshare.20080121
title: PONE-D-22-04547 Risk areas for the occurence of leprosy in border countries of South America - Brazil and Argentina

description: <strong>Misisones_Inc.dbf</strong> Database with the number of new leprosy cases by departments of Misiones (Argentina) in the period 2010 to 2016. <strong>Sul_inc.dbf</strong> Database with the number of new leprosy cases detected by municipalities in the states of Paraná (Brazil), Santa Catarina (Brazil) in the period 2010 to 2016.
DOI: 10.6084/m9.figshare.20080121.v1
title: PONE-D-22-04547 Risk areas for the occurence of leprosy in border countries of South America - Brazil and Argentina

description: <strong>Misisones_Inc.dbf</strong> Database with the number of new leprosy cases by departments of Misiones (Argentina) in the period 2010 to 2016. <strong>Sul_inc.dbf</strong> Database with the number of new leprosy cases detected by municipalities in the states of Paraná (Brazil), Santa Catarina (Brazil) in the period 2010 to 2016.
DOI: 10.5519/qd.owyvkyyg
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (3 records)
DOI: 10.5287/bodleian:d5p7xbg4e
title: Cubic and hexagonal boron nitride doped MgB2 bulk superconductor