cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1244992
title: Genetic introgression of hybrid <i>Rhododendron</i> x <i>intermedium</i> Tausch is habitat mediated: Evidences from south-eastern Alps (Italy)

description: Hybridization between <i>Rhododendron ferrugineum</i> L. and <i>R. hirsutum</i> L. in south-eastern Alps was examined in order to (i) evaluate the breeding direction and the extent of backcrossing between hybrids and the parental species, (ii) define which processes facilitate speciation and maintain species identities and (iii) clarify the role of rock geochemistry in hybridization events. Individuals of three hybrid populations were analysed by morphological and molecular markers. The internal transcribed spacer and <i>trnH–psbA</i> distinguished the parental species and F<sub>1</sub> hybrids while only the simple sequence repeat markers recognized genotype classes: F, H, F<sub>1</sub>, F<sub>2</sub>, BxF (backcross to <i>R. ferrugineum</i>) and BxH (backcross to <i>R. hirsutum</i>). Combining morphological and molecular data, we found that the tested populations had complex genetic structure: the F<sub>1</sub> individuals produce F<sub>2</sub> hybrids and backcross to parental species. Due to <i>R. hirsutum</i> phenology, most backcrossing events were with this parental species (asymmetric hybridization). Geochemical analyses indicate that alkaline soil conditions linked to calcareous dolomitic rocks promoted the genetic assimilation of <i>R. hirsutum.</i> In addition, <i>R.</i> x <i>intermedium</i> shows a higher edaphic adaptation than <i>R. hirsutum</i> as it can be found on a wide range of calcareous-dolomitic rocks as well as on weakly acidic soils of natural or anthropogenic origin.
DOI: 10.6084/m9.figshare.1244992.v2
title: Genetic introgression of hybrid <i>Rhododendron</i> x <i>intermedium</i> Tausch is habitat mediated: Evidences from south-eastern Alps (Italy)

description: Hybridization between <i>Rhododendron ferrugineum</i> L. and <i>R. hirsutum</i> L. in south-eastern Alps was examined in order to (i) evaluate the breeding direction and the extent of backcrossing between hybrids and the parental species, (ii) define which processes facilitate speciation and maintain species identities and (iii) clarify the role of rock geochemistry in hybridization events. Individuals of three hybrid populations were analysed by morphological and molecular markers. The internal transcribed spacer and <i>trnH–psbA</i> distinguished the parental species and F<sub>1</sub> hybrids while only the simple sequence repeat markers recognized genotype classes: F, H, F<sub>1</sub>, F<sub>2</sub>, BxF (backcross to <i>R. ferrugineum</i>) and BxH (backcross to <i>R. hirsutum</i>). Combining morphological and molecular data, we found that the tested populations had complex genetic structure: the F<sub>1</sub> individuals produce F<sub>2</sub> hybrids and backcross to parental species. Due to <i>R. hirsutum</i> phenology, most backcrossing events were with this parental species (asymmetric hybridization). Geochemical analyses indicate that alkaline soil conditions linked to calcareous dolomitic rocks promoted the genetic assimilation of <i>R. hirsutum.</i> In addition, <i>R.</i> x <i>intermedium</i> shows a higher edaphic adaptation than <i>R. hirsutum</i> as it can be found on a wide range of calcareous-dolomitic rocks as well as on weakly acidic soils of natural or anthropogenic origin.
DOI: 10.6084/m9.figshare.1244997.v2
title: Effect of tall-grass invasion on the flowering-related functional pattern of submediterranean hay-meadows

description: Several studies demonstrated that abandonment changes the functional composition of grasslands; nevertheless, little is known about the effects of grassland abandonment on the flowering-related functional pattern. We hypothesized that invasion by tall grasses affects this pattern. We counted the number of flowering shoots per species at five times during the growing season, in 80 plots placed in mown and in abandoned grasslands (central Apennines), and assessed the differences in the trait composition of flowering species between the two treatments. The selected traits were linked to resource acquisition and stress tolerance strategies. Our results indicated that abiotic environmental control is prevalent in determining the phenological pattern in both conditions and in accordance with the phenological “mid-domain hypothesis”. We demonstrated that when the dominant species is a tall grass with competitive behaviour, the magnitude of this phenomenon is amplified due to the abiotic changes yielded by the tall grass invasion. Indeed, in the central and late phases of the growing season (when invasive tall grasses are growing and blooming), abandoned grasslands were marked by a set of traits devoted to stress tolerance or underlying a long reproductive cycle or linked to competition for light.
DOI: 10.6084/m9.figshare.1244997.v4
title: Effect of tall-grass invasion on the flowering-related functional pattern of submediterranean hay-meadows

description: Several studies demonstrated that abandonment changes the functional composition of grasslands; nevertheless, little is known about the effects of grassland abandonment on the flowering-related functional pattern. We hypothesized that invasion by tall grasses affects this pattern. We counted the number of flowering shoots per species at five times during the growing season, in 80 plots placed in mown and in abandoned grasslands (central Apennines), and assessed the differences in the trait composition of flowering species between the two treatments. The selected traits were linked to resource acquisition and stress tolerance strategies. Our results indicated that abiotic environmental control is prevalent in determining the phenological pattern in both conditions and in accordance with the phenological “mid-domain hypothesis”. We demonstrated that when the dominant species is a tall grass with competitive behaviour, the magnitude of this phenomenon is amplified due to the abiotic changes yielded by the tall grass invasion. Indeed, in the central and late phases of the growing season (when invasive tall grasses are growing and blooming), abandoned grasslands were marked by a set of traits devoted to stress tolerance or underlying a long reproductive cycle or linked to competition for light.
DOI: 10.6084/m9.figshare.1244992.v1
title: Genetic introgression of hybrid <i>Rhododendron</i> x <i>intermedium</i> Tausch is habitat mediated. Evidences from south-eastern Alps (Italy)

description: Hybridization between <i>Rhododendron</i><i>ferrugineum</i> L. and <i>R. hirsutum</i> L. in south-eastern Alps was examined in order to i) evaluate the breeding direction and the extent of backcrossing between hybrids and the parental species, ii) define which processes facilitate speciation and maintain species identities, and iii) clarify the role of rock geochemistry in hybridization events. Individuals of three hybrid populations were analysed by morphological and molecular markers. The <i>ITS</i> and <i>trnH-psbA</i> distinguished the parental species and F<sub>1</sub> hybrids while only the SSR markers recognized genotype classes: F, H, F<sub>1</sub>, F<sub>2</sub>, BxF (backcross to <i>R. ferrugineum</i>) and BxH (backcross to <i>R. hirsutum</i>). Combining morphological and molecular data we found that the tested populations had complex genetic structure: the F<sub>1</sub> individuals produce F<sub>2</sub> hybrids and backcross to parental species. Due to <i>R. hirsutum</i> phenology, most backcrossing events were with this parental species (asymmetric hybridization). Geochemical analyses indicate that alkaline soil conditions linked to calcareous dolomitic rocks promoted the genetic assimilation of <i>R. hirsutum.</i> In addition, <i>R. x intermedium</i> shows a higher edaphic adaptation than <i>R. hirsutum</i> as it can be found on a wide range of calcareous-dolomitic rocks as well as on weakly acidic soils of natural or anthropogenic origin.
DOI: 10.6084/m9.figshare.1244997.v3
title: Effect of tall-grass invasion on the flowering-related functional pattern of submediterranean hay-meadows

description: Several studies demonstrated that abandonment changes the functional composition of grasslands; nevertheless, little is known about the effects of grassland abandonment on the flowering-related functional pattern. We hypothesized that invasion by tall grasses affects this pattern. We counted the number of flowering shoots per species at five times during the growing season, in 80 plots placed in mown and in abandoned grasslands (central Apennines), and assessed the differences in the trait composition of flowering species between the two treatments. The selected traits were linked to resource acquisition and stress tolerance strategies. Our results indicated that abiotic environmental control is prevalent in determining the phenological pattern in both conditions and in accordance with the phenological “mid-domain hypothesis”. We demonstrated that when the dominant species is a tall grass with competitive behaviour, the magnitude of this phenomenon is amplified due to the abiotic changes yielded by the tall grass invasion. Indeed, in the central and late phases of the growing season (when invasive tall grasses are growing and blooming), abandoned grasslands were marked by a set of traits devoted to stress tolerance or underlying a long reproductive cycle or linked to competition for light.
DOI: 10.6084/m9.figshare.1244950
title: Supplementary table S5: Gene expression values used for TDI computations for all three species

description: Gene expression values used for TDI computations for all three species
DOI: 10.6084/m9.figshare.1244953
title: Tamiflu database of clinical trials and observational studies

description: Version 1. - ClinicalTrials.gov records - Complete records of completed studies with results (xml archives).
DOI: 10.6084/m9.figshare.1244949
title: Supplementary table S4: DS values for all genes in the three species

description: DS values for all genes in the three species
DOI: 10.6084/m9.figshare.1244950.v2
title: Supplementary table S5: Gene expression values used for TDI computations for all three species

description: Gene expression values used for TDI computations for all three species
DOI: 10.6084/m9.figshare.1244952.v1
title: Classification and mapping of the ecoregions of Italy

description: Ecological regions or ecoregions derive from ecological classification of land and represent broad and discrete ecologically homogeneous areas within which natural communities and species interact with the physical elements of the environment. The aim of this paper is to define the ecoregions of Italy, southern Europe, based on a robust methodological process for classification and mapping. The ecoregions of Italy comprise 2 Divisions, 7 Provinces, 11 Sections, and 33 Subsections and constitute the first comprehensive ecological classification of the country that integrates accurate and updated cartographies and knowledges on climate, vegetation, land units, and biogeography. This classification has the strenght to be adopted as a proper framework for ecological modelling, biodiversity conservation policies, and sustainable territorial planning at the national and subnational level.
DOI: 10.6084/m9.figshare.1244949.v2
title: Supplementary table S4: DS values for all genes in the three species

description: DS values for all genes in the three species
DOI: 10.6084/m9.figshare.1244950.v1
title: Supplementary table S5

description: Gene expression values used for TDI computations for all three species
DOI: 10.6084/m9.figshare.1244948
title: Supplementary table S3: Gene expression values used for TAI computations for all three species

description: Gene expression values used for TAI computations for all three species
DOI: 10.6084/m9.figshare.1244947
title: Supplementary table S2: PS values for all genes in the three species

description: PS values for all genes in the three species
DOI: 10.6084/m9.figshare.1244949.v1
title: Supplementary table S4

description: DS values for all genes in the three species
DOI: 10.6084/m9.figshare.1244946
title: Supplementary table S1: Genomes used for PS map data base

description: Genomes used for PS map data base
DOI: 10.6084/m9.figshare.1244953.v1
title: Tamiflu database of clinical trials and observational studies

description: Version 1. - ClinicalTrials.gov records - Complete records of completed studies with results (xml archives).
DOI: 10.6084/m9.figshare.1244945
title: Effects of height and load weight on shoulder muscle work during overhead lifting task

description: Few musculoskeletal models are available to assess shoulder deeper muscle demand during overhead lifting tasks. Our objective was to implement a musculoskeletal model to assess the effect of lifting height and load on shoulder muscle work. A musculoskeletal model scaled from 15 male subjects was used to calculate shoulder muscle work during six lifting tasks. Boxes containing three different loads (6, 12 and 18 kg) were lifted by the subjects from the waist to shoulder or eye level. After optimisation of the maximal isometric force of the model's muscles, the bio-fidelity of the model was improved by 19%. The latter was able to reproduce the subjects’ lifting movements. Mechanical work of the rotator cuff muscles, upper trapezius and anterior deltoid was increased with lifting load and height augmentation. In conclusion, the use of a musculoskeletal model validated by electromyography enabled to evaluate the muscle demand of deep muscles during lifting tasks.
DOI: 10.6084/m9.figshare.1244948.v2
title: Supplementary table S3: Gene expression values used for TAI computations for all three species

description: Gene expression values used for TAI computations for all three species
DOI: 10.6084/m9.figshare.1244946.v2
title: Supplementary table S1: Genomes used for PS map data base

description: Genomes used for PS map data base
DOI: 10.6084/m9.figshare.1244953.v2
title: Tamiflu database of clinical trials and observational studies

description: Version 1. - ClinicalTrials.gov records - Complete records of completed studies with results (xml archives).
DOI: 10.6084/m9.figshare.1244946.v1
title: Supplementary table S1

description: Genomes used for PS map data base
DOI: 10.6084/m9.figshare.1244947.v2
title: Supplementary table S2: PS values for all genes in the three species

description: PS values for all genes in the three species
DOI: 10.6084/m9.figshare.1244948.v1
title: Supplementary table S3

description: Gene expression values used for TAI computations for all three species
DOI: 10.6084/m9.figshare.1244947.v1
title: Supplementary table S2

description: PS values for all genes in the three species
DOI: 10.6084/m9.figshare.1244953.v4
title: Tamiflu database of clinical trials and observational studies

description: Version 1. - ClinicalTrials.gov records - Complete records of completed studies with results (xml archives).
DOI: 10.6084/m9.figshare.1244945.v1
title: Effects of height and load weight on shoulder muscle work during overhead lifting task

description: Few musculoskeletal models are available to assess shoulder deeper muscle demand during overhead lifting tasks. Our objective was to implement a musculoskeletal model to assess the effect of lifting height and load on shoulder muscle work. A musculoskeletal model scaled from 15 male subjects was used to calculate shoulder muscle work during six lifting tasks. Boxes containing three different loads (6, 12 and 18 kg) were lifted by the subjects from the waist to shoulder or eye level. After optimisation of the maximal isometric force of the model's muscles, the bio-fidelity of the model was improved by 19%. The latter was able to reproduce the subjects’ lifting movements. Mechanical work of the rotator cuff muscles, upper trapezius and anterior deltoid was increased with lifting load and height augmentation. In conclusion, the use of a musculoskeletal model validated by electromyography enabled to evaluate the muscle demand of deep muscles during lifting tasks.
DOI: 10.6084/m9.figshare.1244953.v3
title: Tamiflu database of clinical trials and observational studies

description: Version 1. - ClinicalTrials.gov records - Complete records of completed studies with results (xml archives).
DOI: 10.6084/m9.figshare.1244918.v1
title: HIF1A regulates xenophagic degradation of adherent and invasive <i>Escherichia coli</i> (AIEC)

description: The hypoxia inducible transcription factor HIF1 activates autophagy, a general catabolic pathway involved in the maintenance of cellular homeostasis. Dysfunction in both autophagy and HIF1 has been implicated in an increasing number of human diseases, including inflammatory bowel disease (IBD), such as Crohn disease (CD). Adherent invasive <i>E. coli</i> (AIEC) colonize ileal mucosa of CD patients and strongly promote gastrointestinal inflammatory disorders by activation of HIF-dependent responses. Here, we aim to characterize the contribution of HIF1 in xenophagy, a specialized form of autophagy involved in the degradation of intracellular bacteria. Our results showed that endogenous HIF1A knockdown increased AIEC survival in intestinal epithelial cells. We demonstrate that the increase in survival rate correlates with a dramatic impairment of the autophagic flux at the autolysosomal maturation step. Furthermore, we show that AIEC remained within single-membrane LC3-II-positive vesicles and that they were unable to induce the phosphorylation of ULK1. These results suggested that, in the absence of HIF1A, AIEC were found within LC3-associated phagosomes. Using blocking antibodies against TLR5 and CEACAM6, the 2 well-known AIEC-bound receptors, we showed that downstream receptor signaling was necessary to mediate ULK1 phosphorylation. Finally, we provide evidence that HIF1 mediates CEACAM6 expression and that CEACAM6 is necessary to recruit ULK1 in a bacteria-containing signaling hub. Collectively, these results identify a new function for HIF1 in AIEC-dedicated xenophagy, and suggest that coactivation of autophagy and HIF1A expression may be a potential new therapy to resolve AIEC infection in CD patients.
DOI: 10.6084/m9.figshare.1244912
title: Zadania do wykonania przez uczestników testów funkcjonalnych

description: testowe dane z artykułu ZIN 2-2013
DOI: 10.6084/m9.figshare.1244900
title: abundance of insects during day verse night

description: Method: The purpose of this experiment is to determine the abundance of different insect species during different time of the day in this case: number of insects during night (8:30 am) vs. number of insects during day time (8:30 pm). The experiment took place at York University Keele campus around east of Stong Pond (Grassland). The experiment was taken from October-14-2014 – October-21-2014. The data was collected after every 12 hours for 7 days. In this experiment pitfall trap technique was used to determine the abundance of insect. Three transects were used and placed at randomly in the middle of the grassland. After that for each transect 5 plastic cups were placed in a grassland area and each plastic cup was placed at 5m apart from each other. Each plastic cup was half filled with soap water, so that we can capture the insects inside the cup. After 12 hours the total numbers of insects inside the each cup were counted, total number of different species inside each cup was recorded, also temperature and plant density were noted After counting the insects, the water inside the cup was replace with new soap water for next experiment and this experiment was continued for 7 days. Data: Location: Grassland: East of Stond Pond at York University Keele campus. Time: The data will be collected for 7 days: the time period of 12 hr (8:00am -8:00pm) Transect Number: Three transects are being use at different location at grassland Pitfall: 15 pitfall trap cups are being used with 5m of distance from each other Temperature (°C): Temperature for each set of data is recorded in degree celcius. Number of Insects: All the insects captured inside the plastic cup is counted and recorded for each trail. Number of species: The different number of species visually observed inside the plastic cup for each trail and were recorded Plant Density: The plant density visually observed by using scale of 1=4 (1= no crowded, 2= very little, 3 =medium crowded, 4= heavily crowded)
DOI: 10.6084/m9.figshare.1244912.v1
title: Zadania do wykonania przez uczestników testów funkcjonalnych

description: testowe dane z artykułu ZIN 2-2013
DOI: 10.6084/m9.figshare.1244918.v2
title: HIF1A regulates xenophagic degradation of adherent and invasive <i>Escherichia coli</i> (AIEC)

description: The hypoxia inducible transcription factor HIF1 activates autophagy, a general catabolic pathway involved in the maintenance of cellular homeostasis. Dysfunction in both autophagy and HIF1 has been implicated in an increasing number of human diseases, including inflammatory bowel disease (IBD), such as Crohn disease (CD). Adherent invasive <i>E. coli</i> (AIEC) colonize ileal mucosa of CD patients and strongly promote gastrointestinal inflammatory disorders by activation of HIF-dependent responses. Here, we aim to characterize the contribution of HIF1 in xenophagy, a specialized form of autophagy involved in the degradation of intracellular bacteria. Our results showed that endogenous HIF1A knockdown increased AIEC survival in intestinal epithelial cells. We demonstrate that the increase in survival rate correlates with a dramatic impairment of the autophagic flux at the autolysosomal maturation step. Furthermore, we show that AIEC remained within single-membrane LC3-II-positive vesicles and that they were unable to induce the phosphorylation of ULK1. These results suggested that, in the absence of HIF1A, AIEC were found within LC3-associated phagosomes. Using blocking antibodies against TLR5 and CEACAM6, the 2 well-known AIEC-bound receptors, we showed that downstream receptor signaling was necessary to mediate ULK1 phosphorylation. Finally, we provide evidence that HIF1 mediates CEACAM6 expression and that CEACAM6 is necessary to recruit ULK1 in a bacteria-containing signaling hub. Collectively, these results identify a new function for HIF1 in AIEC-dedicated xenophagy, and suggest that coactivation of autophagy and HIF1A expression may be a potential new therapy to resolve AIEC infection in CD patients.
DOI: 10.6084/m9.figshare.1244882
title: Supporting information for Rebich-Hespanha, et al. (2015) "Image themes and frames in US print news stories about climate change", Environmental Communication, 9(4), 491-519.

description: These files contain supporting information forRebich-Hespanha, S., Rice, R.E., Montello, D.R., Retzloff, S., Tien, S., and Hespanha, J.P. (2015) Image Themes and Frames in U.S. Print News Stories about Climate Change, Environmental Communication, 9(4), 491-519. doi:10.1080/17524032.2014.983534. Please see individual item descriptions for more details about contents. Please cite included items individually.