cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.j931d
title: Data from: High-speed displays encoding motor skill trigger elevated territorial aggression in downy woodpeckers

description: 1) Many species perform social displays that incorporate complex body
 movements. However, the reason why such exaggerated behavioral signals
 evolve in the first place is unclear. 2) Recent work posits that physical
 displays arise in part because they showcase an animal’s motor skill—that
 is, the ability to produce challenging motor acts with great coordination,
 precision, and/or speed. Support for this idea is largely correlational,
 with few studies attempting to manipulate metrics of motor skill to assess
 their effect on physical display efficacy. 3) Here, we address this issue
 in the downy woodpecker (Dryobates pubescens). Individuals of this species
 compete for territories through the performance of drums, which are
 complex displays produced by rapidly hammering the bill against a resonate
 surface at rates of 16 hits sec-1. This display is a whole-body endeavor,
 and its production relies on the ability to swiftly oscillate the head
 forward and backward at fraction-of-a-second periods. 4) Using a series of
 playback studies, we expose resident birds to experimentally engineered
 drums that reflect putative fine-scale differences in the motor command of
 the head and neck. We show that resident individuals respond more
 aggressively to drums characterized by a cadence with a 9-msec faster beat
 speed. These residents even modulate their own drum speed to resemble this
 high-performance stimulus, although they often fail to reach it. Residents
 also appear to appraise drum acceleration by listening to the time
 intervals between successive beats in a single drum, while tracking how
 these time intervals change as the signal progresses. 5) Our data support
 a connection between motor skill and the effectiveness of a physical
 display produced through elaborate body movement. We therefore suspect
 that motor skill is adaptive and evolves in response to selection by
 competition for effective drum displays.
description: red-bellied and downy
 woodpecker playback responserb dw
 playback.csvdowny behavioral
 response datafinal behavioral
 data.csvdw drum
 responses
DOI: 10.15468/dl.j4v9un
title: Occurrence Download

description: A dataset containing 442 records in GBIF matching the query:
SELECT
 '412' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 37.42857426825602
 AND decimalLatitude &lt;= 41.89415215079384
 AND decimalLongitude &gt;= 51.807709614649205
 AND decimalLongitude &lt;= 59.94074752362532
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 442 records were derived from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001388-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.fs375
title: Data from: Nocturnal hypothermia impairs flight ability in birds: a cost of being cool

description: Many birds use regulated drops in night-time body temperature (Tb) to
 conserve energy critical to winter survival. However, a significant degree
 of hypothermia may limit a bird's ability to respond to predatory
 attack. Despite this likely energy–predation trade-off, the behavioural
 costs of avian hypothermia have yet to be examined. We thus monitored the
 nocturnal hypothermia of mourning doves (Zenaida macroura) in a laboratory
 setting in response to food deprivation. Nocturnal flight tests were used
 to quantify the flight ability of hypothermic doves. Many hypothermic
 doves (39% of tests) could not fly while carrying a small weight, but
 could do so after quickly warming up to typical daytime Tb. Doves that
 were unable to fly during their first test were more hypothermic than
 those that could fly, with average Tb reductions of 5.3°C and 3.3°C,
 respectively, but there was no overall indication of a threshold Tb
 reduction beyond which doves were consistently incapable of flight. These
 results suggest that energy-saving hypothermia interferes with avian
 antipredator behaviour via a reduction in flight ability, likely leading
 to a trade-off between energy-saving hypothermia and the risk of
 predation.
description: Carr & Lima dove
 flight dataData for all hypothermic
 mourning doves subjected to flight tests and included in our analyses. The
 variable "Dep #" corresponds to the duration of the
 food-deprivation period (1 - 3 days). The variable "Flight #"
 represents the number of the flight test during each deprivation night,
 listed in sequential order within Dep #. "Tb drop" denotes the
 drop in body temperature compared to normal daytime body temperature for
 each bird. Lastly, "Flight (1/0)" codes for a bird's
 ability to fly during each flight test (1 = fly-capable; 0 = no
 flight).Carr & Lima MODO
 data.xlsx
DOI: 10.6084/m9.figshare.30048628
title: Whale shark genome assembly sRhiTyp1.2 cds sequences

description: Gene models predicted on whale shark genome assembly sRhiTyp1.2 reported in Kawaguchi et al. produced by Squalomix consortium
DOI: 10.6084/m9.figshare.30048628.v2
title: Whale shark genome assembly sRhiTyp1.2 cds sequences

description: Gene models predicted on whale shark genome assembly sRhiTyp1.2 reported in Kawaguchi et al. produced by Squalomix consortium
DOI: 10.6084/m9.figshare.30048628.v1
title: Whale shark genome assembly sRhiTyp1.2 cds sequences

description: Gene models predicted on whale shark genome assembly sRhiTyp1.2 reported in Kawaguchi et al. produced by Squalomix consortium
DOI: 10.5061/dryad.k54hk
title: Data from: Nesting ecology of stingless bees (Hymenoptera, Meliponina) in urban areas: the importance of afforestation

description: Studies on nesting ecology have proven to be extremely important for
 conservation of stingless bees. This kind of study is scarce in urban
 landscapes. Our study aimed to analyze the abundance, density, diversity,
 spatial distribution and nesting habits of species belonging to the
 Meliponina subtribe in an urban area of the Uberlândia municipality, Minas
 Gerais state. We checked potential nesting sites by searching for nests
 from October 2009 until April 2010. We collected six worker bees from each
 detected nest to identify species, and estimated diversity and analyzed
 the spatial distribution pattern of the nests using the Shannon–Wiener and
 Nearest Neighbor index, respectively. We found fifty nests belonging to
 seven species, with Nannotrigona testaceicornis being the most abundant
 species (44%). The density of nests was 2.17 nests/ha, the Shannon–Wiener
 diversity index was H’=1.58 and the clumped distribution was the detected
 dispersal pattern. The height of the nests in relation to the ground
 varied from 0 to 12 m: Trigona spinipes had the highest nests and the
 highest variation for this parameter. Hollow trees were the preferred
 substrate occupied by the observed bees species (70%): Caesalpinia
 peltophoroides was the preferred plant species for nesting. Our results
 suggested that urban landscapes can sustain a high diversity of stingless
 bees, and maintaining trees species and urban forestry projects are
 important tools for the conservation of this group of animals. This type
 of study provides relevant information to the development of management
 and conservation plans for Meliponina species.
description: BEENEST_UMUARAMA_2009-2010This dataset contains data about the nests of stingless bees (Hymenoptera, Meliponina) in an urban area of Uberlandia-MG, Brazil in the years of 2009 and 2010.
DOI: 10.5061/dryad.dn0qk
title: Data from: Is colour polymorphism advantageous to populations and species?

description: I am writing in response to an article by Bolton, Rollins and Griffith
 (2015) entitled ‘The danger within: the role of genetic, behavioural and
 ecological factors in population persistence of colour polymorphic
 species’ that was recently published as an Opinion under the NEWS AND
 VIEWS section in Molecular Ecology. Bolton et al. (2015) argue that colour
 polymorphism may reduce population fitness and increase extinction risk,
 and emphasize that this is contrary to predictions put forward by Forsman
 et al. (2008) and Wennersten and Forsman (2012) that the existence of
 multiple colour morphs with co-adapted gene complexes and associated trait
 values may increase the ecological and evolutionary success of polymorphic
 populations and species. Bolton et al. (2015) further state that there is
 no clear evidence from studies of ‘true polymorphic species’ that
 polymorphism promotes population persistence. In response, I (i) challenge
 their classifications of polymorphisms and revisit the traditional
 definitions recognizing the dynamic nature of polymorphisms, (ii) review
 empirical studies that have examined whether and how polymorphism is
 associated with extinction risk, (iii) discuss the roles of trait
 correlations between colour pattern and other phenotypic dimensions for
 population fitness, and (iv) highlight that the causes and mechanisms that
 influence the composition and maintenance of polymorphisms are different
 from the consequences of the polymorphic condition and how it may impact
 on aspects of ecological success and long-term persistence of populations
 and species.
description: Publication trend data
 for Figure 1File contains
 information on total number of articles published per year summed across
 all scientific disciplines, absolute number of papers on colour
 polymorphism published per year, relative scientific output on colour
 polymorphism (expressed as percentage of total research output). Data
 extracted from a topic search for ’colo*r polymorphism’ OR ’colo*r
 polymorphic’ conducted on 17 August 2015 from ISI Web of
 Science.
DOI: 10.5061/dryad.q329b
title: Data from: Drift load in populations of small size and low density

description: According to theory, drift load in randomly mating populations is
 determined by past population size, because enhanced genetic drift in
 small populations causes accumulation and fixation of recessive
 deleterious mutations of small effect. In contrast, segregating load due
 to mutations of low frequency should decline in smaller populations, at
 least when mutations are highly recessive and strongly deleterious. Strong
 local selection generally reduces both types of load. We tested these
 predictions in 13 isolated, outcrossing populations of Arabidopsis lyrata
 that varied in population size and plant density. Long-term size was
 estimated by expected heterozygosity at 20 microsatellite loci.
 Segregating load was assessed by comparing performance of offspring from
 selfings versus within-population crosses. Drift load was the heterosis
 effect created by interpopulation outbreeding. Results showed that
 segregating load was unrelated to long-term size. However, drift load was
 significantly higher in populations of small effective size and low
 density. Drift load was mostly expressed late in development, but started
 as early as germination and accumulated thereafter. The study largely
 confirms predictions of theory and illustrates that mutation accumulation
 can be a threat to natural populations.
description: allData_121010txt file with population-cross type means and standard errors of a common garden study on Arabidopsis lyrata with the following columns: oberservationNo, population, site, expectedHeterozygosity, localDensity [m-2], multilocusOutcrossingRate (tm), crossType, multiplicative performance I (MPI), multiplicative performance II (MPII), seedLength [mm], germination (binary), infection 2009 (binary), time to flowering 2009 [days], pedicels 2009 (binary), fruits 2009 (binary), pollenNumber per flower 2009, pollenSize 2009 [um], time to flowering 2010 [days], noPedicels to 2010, noFruits to 2010, noPedicels to 2012, noFruits to 2012.allData_121024.txt
DOI: 10.5061/dryad.c7t3810
title: Data from: Mitochondrial genetic effects on reproductive success: signatures of positive intrasexual, but negative intersexual pleiotropy

description: Theory predicts that maternal inheritance of mitochondria will facilitate
 the accumulation of mtDNA mutations that are male biased, or even sexually
 antagonistic, in effect. While there are many reported cases of mtDNA
 mutations conferring cytoplasmic male sterility in plants, historically it
 was assumed such mutations would not persist in the streamlined
 mitochondrial genomes of bilaterian metazoans. Intriguingly, recent cases
 of mitochondrial variants exerting male-biases in effect have come to
 light in bilaterians. These cases aside, it remains unknown whether the
 mitochondrial genetic variation affecting phenotypic expression, and in
 particular reproductive performance, in bilaterians is routinely comprised
 of sex-biased or sex-specific variation. If selection consistently favours
 mtDNA variants that augment female fitness, but at cost to males, this
 could shape patterns of pleiotropy and lead to negative intersexual
 correlations across mtDNA haplotypes. Here, we show that genetic variation
 across naturally occurring mitochondrial haplotypes affects components of
 reproductive success in both sexes, in the fruit fly Drosophila
 melanogaster. We find that intrasexual correlations across mitochondrial
 haplotypes, for components of reproductive success, are generally
 positive, while intersexual correlations are negative. These results
 accord with theoretical predictions, suggesting that maternal inheritance
 has led to the fixation of numerous mutations of sexually antagonistic
 effect.
description: Trait means and
 correlation coefficientsFirst tab is the trait
 means for all 5 traits measured, whereas second tab are the bootstrapped
 correlation coefficients and 95% confidence intervals. Note: For
 intersexual correlations, haplotype BRO was removed from analyses given
 fitness is zero. This would skew correlation.Camus-ProcB-2018.xlsx
DOI: 10.6084/m9.figshare.30048616
title: Whale shark genome assembly sRhiTyp1.2 gene models

description: Gene models predicted on whale shark genome assembly sRhiTyp1.2 reported in Kawaguchi et al. produced by Squalomix consortium
DOI: 10.6084/m9.figshare.30048616.v1
title: Whale shark genome assembly sRhiTyp1.2 gene models

description: Gene models predicted on whale shark genome assembly sRhiTyp1.2 reported in Kawaguchi et al. produced by Squalomix consortium
DOI: 10.6084/m9.figshare.30048616.v2
title: Whale shark genome assembly sRhiTyp1.2 gene models

description: Gene models predicted on whale shark genome assembly sRhiTyp1.2 reported in Kawaguchi et al. produced by Squalomix consortium
DOI: 10.5061/dryad.385673v
title: Data from: Territorial defence in a network: audiences only matter to male crabs primed for confrontation

description: Territorial contests often occur in the presence of conspecifics not
 directly involved in the interaction. Actors may alter their behaviour in
 the presence of this audience, an ‘audience effect’, and audiences
 themselves may alter their behaviour as a result of observing an
 interaction, a ‘bystander effect’. Previous work has documented these
 effects by looking at each in isolation, but to our knowledge, none has
 investigated their interaction; something that is more likely to represent
 a realistic scenario for species where individuals aggregate spatially. We
 therefore have a somewhat limited understanding of the extent and
 direction of these potentially complex indirect social effects on
 behaviour. Here we examined how audience and bystander effects work in
 tandem to modify resident male aggressive behaviour towards intruders in
 European fiddler crabs, Afruca tangeri. We found that male crabs with an
 audience showed greater aggressive behaviour towards an intruder compared
 to males without an audience, but only if they had acted as a bystander to
 an aggressive signalling interaction prior to the intrusion. Indeed,
 bystanding during aggressive interactions elevated aggressive responses to
 intruders maximally if there was an audience present. Our results suggest
 that bystanding had a priming effect on territory-holding males,
 potentially by providing information on the immediate level of competition
 in the local neighbourhood, and that same-sex audiences only matter if
 males have been primed. This study highlights the fundamental importance
 of considering broader interaction networks in studying real-world dyadic
 interactions and of including non-vertebrate taxonomic groups in these
 studies.
description: Audience and bystander
 effects in male fiddler crabsBehavioural data from a
 field experiment testing for audience and bystander effects in male
 fiddler crabs (Afruca tangeri) in agonistic contexts. The file was created
 in Microsoft Excel 2010. Each row represents a focal individual and
 columns represent the treatment group (Treatment), the straight-line
 distance between the burrow of the focal male and his male neighbour
 included within the experimental arena (Focal-Neighbour interburrow
 distance) and the amount of time that the focal spent performing
 aggressive behaviour (Focal aggressive behaviour).Darden et al behavioural
 data.xlsx
DOI: 10.5061/dryad.mm1d7
title: Data from: Evolution of the rudist bivalve Agriopleura Kühn (Radiolitidae, Hippuritida) from the Mediterranean region

description: The genus Agriopleura (Radiolitidae) is restricted to the Lower Cretaceous
 of the Mediterranean region, including the Middle East, and this rudist is
 apparently absent from the New World. Agriopleura underwent a size
 increase from late Hauterivian to mid-late Barremian, matching Cope's
 rule, followed by a Lilliput phase in the early Aptian. The relative
 development of radial bands increased through time and represents a key
 evolutionary index. During its evolution, Agriopleura increased in species
 diversity and expanded geographically onto the European Mediterranean
 Tethyan margin from the late Hauterivian to Barremian, after which it
 disappeared from the region (pseudotermination). In the lower Aptian,
 after a Lazarus gap, the genus reappears in the southern Mediterranean
 Tethyan margin. Assuming that Archaeoradiolites is the direct descendant
 of Agriopleura, the disappearance of the genus in the mid-Aptian was a
 pseudoextinction and this coincided with a major crisis of shallow
 carbonate settings and their associated biota. The definition of
 Agriopleura species is based on a set of qualitative and quantitative
 external and internal characters. Five species are recognized: three
 Barremian species, Agriopleura blumenbachi, the type species, A.
 marticensis and A. carinata; one lower Aptian species A. libanica; and a
 new species A. sequana restricted to the upper Hauterivian. Principal
 component analysis is used to test the distinctiveness of the species and
 the pattern of relationships of some of their key quantitative characters.
description: Masse_appendixQuantitative characters used for statistical approache
DOI: 10.5061/dryad.df854
title: Data from: Beyond the competition-colonization tradeoff: linking multiple trait response to disturbance characteristics

description: Disturbances’ role in shaping communities is well documented but highly
 disputed. We suggest replacing the overused two-trait trade-off approach
 with a functional group scheme, constructed from combinations of four key
 traits that represent four classes of species’ responses to disturbances.
 Using model results and field observations from sites affected by two
 highly different disturbances, we demonstrated that popular dichotomous
 trade-offs are not sufficient to explain community dynamics, even if some
 emerge under certain conditions. Without disturbances, competition was
 only sufficient to predict species survival but not relative success,
 which required some escape mechanism (e.g., long-term dormancy). With
 highly predictable and large-scale disturbances, successful species showed
 a combination of high individual tolerance to disturbance and, more
 surprisingly, high competitive ability. When disturbances were less
 predictable, high individual tolerance and long-term seed dormancy were
 favored, due to higher environmental uncertainty. Our study demonstrates
 that theories relying on a small number of predefined trade-offs among
 traits (e.g., competition-colonization trade-off) may lead to unrealistic
 results. We suggest that the understanding of disturbance-community
 relationships can be significantly improved by employing sets of relevant
 trait assemblies instead of the currently common approach in which
 trade-offs are assumed in advance.
description: Seifan et al - Field
 survey informationSpecies recorded in the
 field survey under different environmental conditions. DRY/WET – plots
 with low/high flooding probabilities respectively; M+/ M– – plots
 with/without mole activity respectively. For each species listed, its
 abundance (number of individuals found in the survey plots) per
 environmental condition is given.