cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13176767.v3
title: Identifying optimal capsid duplication length for the stability of reporter flaviviruses

description: Mosquito-transmitted flaviviruses cause widespread disease across the world. To provide better molecular tools for drug screens and pathogenesis studies, we report a new approach to produce stable NanoLuc-tagged flaviviruses, including dengue virus serotypes 1-4, Japanese encephalitis virus, yellow fever virus, West Nile virus, and Zika virus. Since the reporter gene is often engineered at the capsid gene region, the capsid sequence must be duplicated to flank the reporter gene; such capsid duplication is essential for viral replication. The conventional approach for stabilizing reporter flaviviruses has been to shorten or modify the duplicated capsid sequence to minimize homologous recombination. No study has examined the effects of capsid duplication length on reporter virus stability. Here we report an optimal length to stabilize reporter flaviviruses. These viruses were stable after ten rounds of cell culture passaging, and in the case of stable NanoLuc-tagged Zika virus (ZIKV C38), the virus replicated to 10<sup>7</sup> FFU/ml in cell culture and produced robust luciferase signal after inoculation in mosquitoes. Mechanistically, the optimal length of capsid duplication may contain all the <i>cis</i>-acting RNA elements required for viral RNA replication, thus reducing the selection pressure for recombination. Together, these data describe an improved method of constructing optimal reporter flaviviruses.
DOI: 10.6084/m9.figshare.22613828.v1
title: Additional file 2 of RNA-seq analysis reveals the critical role of the novel lncRNA BIANCR in intramuscular adipogenesis through the ERK1/2 signaling pathway

description: Additional file 2. Primers used in PCR and qRT-PCR.
DOI: 10.6084/m9.figshare.22613831.v1
title: Additional file 3 of RNA-seq analysis reveals the critical role of the novel lncRNA BIANCR in intramuscular adipogenesis through the ERK1/2 signaling pathway

description: Additional file 3. Antibody information.
DOI: 10.6084/m9.figshare.6885290.v1
title: Comprehensive meta-analysis and co-expression network analysis identify candidate genes for salt stress response in Arabidopsis

description: Salinity is one of the major environmental limitations to agricultural productivity throughout the world. To overcome the defects of microarray sequencing analyses caused by heterogeneity among individual studies, the effect size (ES) analysis based on the NetworkAnalyst web tool was conducted to synthesize 13 salt stress-related microarray data-sets, filtered from over 2000 data-sets and publications. A total of 3811 differently expressed (DE) genes were identified with 1476 up-regulated and 2335 down-regulated genes in NaCl-treated samples. A total of 172 biological processes were enriched by the over-expressed genes, like “response to jasmonic acid”, “positive regulation of transcription, DNA-templated”, and “insulin resistance”. The co-expression network construction yielded 15,630 nodes and 73,125 edges, further clustered into 178 co-expressed clusters based on the Heuristic Cluster Chiseling Algorithm (HCCA) method. A total of 1036 genes with the top 5% of clusters were treated as hub genes. The identification of DE genes, gene-gene co-expressing relations, and hub genes may contribute to uncover the mechanisms of salinity stress tolerance in Arabidopsis.
DOI: 10.6084/m9.figshare.22613843
title: Additional file 7 of RNA-seq analysis reveals the critical role of the novel lncRNA BIANCR in intramuscular adipogenesis through the ERK1/2 signaling pathway

description: Additional file 7. DELs between 4 adipogenesis stages.
DOI: 10.6084/m9.figshare.22613849
title: Additional file 9 of RNA-seq analysis reveals the critical role of the novel lncRNA BIANCR in intramuscular adipogenesis through the ERK1/2 signaling pathway

description: Additional file 9. Module information of WGCNA.
DOI: 10.6084/m9.figshare.13176767.v1
title: Identifying optimal capsid duplication length for the stability of reporter flaviviruses

description: Mosquito-transmitted flaviviruses cause widespread disease across the world. To provide better molecular tools for drug screens and pathogenesis studies, we report a new approach to produce stable NanoLuc-tagged flaviviruses, including dengue virus serotypes 1-4, Japanese encephalitis virus, yellow fever virus, West Nile virus, and Zika virus. Since the reporter gene is often engineered at the capsid gene region, the capsid sequence must be duplicated to flank the reporter gene; such capsid duplication is essential for viral replication. The conventional approach for stabilizing reporter flaviviruses has been to shorten or modify the duplicated capsid sequence to minimize homologous recombination. No study has examined the effects of capsid duplication length on reporter virus stability. Here we report an optimal length to stabilize reporter flaviviruses. These viruses were stable after ten rounds of cell culture passaging, and in the case of stable NanoLuc-tagged Zika virus (ZIKV C38), the virus replicated to 10<sup>7</sup> FFU/ml in cell culture and produced robust luciferase signal after inoculation in mosquitoes. Mechanistically, the optimal length of capsid duplication may contain all the <i>cis</i>-acting RNA elements required for viral RNA replication, thus reducing the selection pressure for recombination. Together, these data describe an improved method of constructing optimal reporter flaviviruses.
DOI: 10.6084/m9.figshare.22613852
title: Additional file 10 of RNA-seq analysis reveals the critical role of the novel lncRNA BIANCR in intramuscular adipogenesis through the ERK1/2 signaling pathway

description: Additional file 10. Correlation between mRNA and BIANCR.
DOI: 10.6084/m9.figshare.22613852.v1
title: Additional file 10 of RNA-seq analysis reveals the critical role of the novel lncRNA BIANCR in intramuscular adipogenesis through the ERK1/2 signaling pathway

description: Additional file 10. Correlation between mRNA and BIANCR.
DOI: 10.6084/m9.figshare.6885377
title: Additional file4: of Identification of microRNAs in response to aluminum stress in the roots of Tibetan wild barley and cultivated barley

description: Table S2. Detailed information of miRNA libraries sequencing. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.22613858.v1
title: Additional file 12 of RNA-seq analysis reveals the critical role of the novel lncRNA BIANCR in intramuscular adipogenesis through the ERK1/2 signaling pathway

description: Additional file 12. The sequence of BIANCR.
DOI: 10.6084/m9.figshare.22613849.v1
title: Additional file 9 of RNA-seq analysis reveals the critical role of the novel lncRNA BIANCR in intramuscular adipogenesis through the ERK1/2 signaling pathway

description: Additional file 9. Module information of WGCNA.
DOI: 10.6084/m9.figshare.22607431
title: Additional file 3 of Chondroitin sulfate alleviates osteoporosis caused by calcium deficiency by regulating lipid metabolism

description: Additional file 3: Table S3. The differential metabolites of plasma metabolomics between the N group and the C group. The differential metabolites of plasma metabolomics between the C group and the Ca group. The differential metabolites of plasma metabolomics between the C group and the CS group. The differential metabolites of plasma metabolomics between the CS group and the Ca group.
DOI: 10.7924/r4xw4mn8r
title: Scripts from: Prevalence of Bias against Neurodivergence-Related Terms in Artificial Intelligence Language Models

description: Given the increasing role of artificial intelligence (AI) in many decision-making processes, we investigate the presence of AI bias towards terms related to a range of neurodivergent conditions, including autism, ADHD, schizophrenia, and obsessive-compulsive disorder (OCD). We use eleven different language model encoders to test the degree to which words related to neurodiversity are associated with groups of words related to danger, disease, badness, and other negative concepts. For each group of words tested, we report the mean strength of association (Word Embedding Association Test (WEAT) score) averaged over all encoders and find generally high levels of bias. Additionally, we show that bias occurs even when testing words associated with autistic or neurodivergent strengths. For example, embedders had a negative average association between words related to autism and words related to honesty, despite honesty being considered a common strength of autistic individuals. Finally, we introduce a sentence similarity ratio test and demonstrate that many sentences describing types of disabilities, e.g. "I have autism" or "I have epilepsy", have even stronger negative associations than control sentences such as "I am a bank robber".
DOI: 10.21223/yn202c/nobhsi
title: 02_Material list_HERLB_ECU_2023_Lateblight_StaCatalina.xlsx

description: :unav
DOI: 10.21223/yn202c/xjuae9
title: 03_Crop managment_HERLB_ECU_2023_Lateblight_StaCatalina.xlsx

description: :unav
DOI: 10.6084/m9.figshare.22607431.v1
title: Additional file 3 of Chondroitin sulfate alleviates osteoporosis caused by calcium deficiency by regulating lipid metabolism

description: Additional file 3: Table S3. The differential metabolites of plasma metabolomics between the N group and the C group. The differential metabolites of plasma metabolomics between the C group and the Ca group. The differential metabolites of plasma metabolomics between the C group and the CS group. The differential metabolites of plasma metabolomics between the CS group and the Ca group.
DOI: 10.6084/m9.figshare.6885362
title: Additional file 1: of The genetic locus underlying red foliage and fruit skin traits is mapped to the same location in the two pear bud mutants ‘Red Zaosu’ and ‘Max Red Bartlett’

description: Table S1. 28 gene models predicted in the candidate 368.6 kb genomic region (XLS 25 kb).
DOI: 10.6084/m9.figshare.6885362.v1
title: Additional file 1: of The genetic locus underlying red foliage and fruit skin traits is mapped to the same location in the two pear bud mutants ‘Red Zaosu’ and ‘Max Red Bartlett’

description: Table S1. 28 gene models predicted in the candidate 368.6 kb genomic region (XLS 25 kb).
DOI: 10.6084/m9.figshare.6885374
title: Additional file3: of Identification of microRNAs in response to aluminum stress in the roots of Tibetan wild barley and cultivated barley

description: Table S1. Detailed information of total detected miRNAs in Golden Promise and XZ29. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.6885398
title: Additional file 1: of The features of AECOPD with carbon dioxide retention

description: Table S1. Comparison of wall areas between the carbon dioxide retention and non-carbon dioxide retention COPD groups. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6885398.v1
title: Additional file 1: of The features of AECOPD with carbon dioxide retention

description: Table S1. Comparison of wall areas between the carbon dioxide retention and non-carbon dioxide retention COPD groups. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6885374.v1
title: Additional file3: of Identification of microRNAs in response to aluminum stress in the roots of Tibetan wild barley and cultivated barley

description: Table S1. Detailed information of total detected miRNAs in Golden Promise and XZ29. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.6885377.v1
title: Additional file4: of Identification of microRNAs in response to aluminum stress in the roots of Tibetan wild barley and cultivated barley

description: Table S2. Detailed information of miRNA libraries sequencing. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.22614047.v1
title: Additional file 3 of Identification and validation of crucial lnc-TRIM28-14 and hub genes promoting gastric cancer peritoneal metastasis

description: Additional file 3: Table S3. LncRNAs in blue module.
DOI: 10.6084/m9.figshare.22614061.v1
title: Additional file 4 of Identification of biomarkers and therapeutic targets related to Sepsis-associated encephalopathy in rats by quantitative proteomics

description: Additional file 4. Heatmap.
DOI: 10.6084/m9.figshare.22614064.v1
title: Additional file 5 of Identification of biomarkers and therapeutic targets related to Sepsis-associated encephalopathy in rats by quantitative proteomics

description: Additional file 5. Volcanomap.
DOI: 10.21223/yn202c/7iidkf
title: 01_Fieldbook_HERLB_ECU_2023_Lateblight_StaCatalina.tab

description: :unav
DOI: 10.21223/yn202c
title: Dataset for: Open field assessment for late blight evaluation in HERLB population (First trial_Ecuador)

description: 29 families potato were exposed to late blight under natural infection in Quito, Eucador (3050 masl Quito-Ecuador) during the rainy season in 2023. Statistical Augmented row-column design without replication of 3 hill plots was properly established, three varieties with known late blight response were included as controls. After 40 days after planting (DAP), the percentage of leaf area affected by late blight infection was recorded by plot throughout the season to subsequently compute the area under the disease progress curve (AUDPC).
DOI: 10.21223/yn202c/2zml3f
title: 04_Data_dictionary_HERLB_ECU_2023_Lateblight_StaCatalina.tab

description: :unav
DOI: 10.6084/m9.figshare.22614052.v1
title: Additional file 2 of Identification of biomarkers and therapeutic targets related to Sepsis-associated encephalopathy in rats by quantitative proteomics

description: Additional file 2. Peptide report.
DOI: 10.6084/m9.figshare.22614070
title: Additional file 7 of Identification of biomarkers and therapeutic targets related to Sepsis-associated encephalopathy in rats by quantitative proteomics

description: Additional file 7. Canonical pathways.
DOI: 10.6084/m9.figshare.22614070.v1
title: Additional file 7 of Identification of biomarkers and therapeutic targets related to Sepsis-associated encephalopathy in rats by quantitative proteomics

description: Additional file 7. Canonical pathways.
DOI: 10.6084/m9.figshare.22614055.v1
title: Additional file 3 of Identification of biomarkers and therapeutic targets related to Sepsis-associated encephalopathy in rats by quantitative proteomics

description: Additional file 3. Protein report.
DOI: 10.6084/m9.figshare.22614047
title: Additional file 3 of Identification and validation of crucial lnc-TRIM28-14 and hub genes promoting gastric cancer peritoneal metastasis

description: Additional file 3: Table S3. LncRNAs in blue module.
DOI: 10.6084/m9.figshare.22614041.v1
title: Additional file 1 of Identification and validation of crucial lnc-TRIM28-14 and hub genes promoting gastric cancer peritoneal metastasis

description: Additional file 1
DOI: 10.6084/m9.figshare.22614049
title: Additional file 1 of Identification of biomarkers and therapeutic targets related to Sepsis-associated encephalopathy in rats by quantitative proteomics

description: Additional file 1. Raw data.
DOI: 10.6084/m9.figshare.22614064
title: Additional file 5 of Identification of biomarkers and therapeutic targets related to Sepsis-associated encephalopathy in rats by quantitative proteomics

description: Additional file 5. Volcanomap.
DOI: 10.6084/m9.figshare.22614067
title: Additional file 6 of Identification of biomarkers and therapeutic targets related to Sepsis-associated encephalopathy in rats by quantitative proteomics

description: Additional file 6. GO analysis
DOI: 10.6084/m9.figshare.22614056
title: Additional file 5 of Identification and validation of crucial lnc-TRIM28-14 and hub genes promoting gastric cancer peritoneal metastasis

description: Additional file 5: Table S5. Genes in magenta module.
DOI: 10.6084/m9.figshare.22614067.v1
title: Additional file 6 of Identification of biomarkers and therapeutic targets related to Sepsis-associated encephalopathy in rats by quantitative proteomics

description: Additional file 6. GO analysis
DOI: 10.6084/m9.figshare.22614055
title: Additional file 3 of Identification of biomarkers and therapeutic targets related to Sepsis-associated encephalopathy in rats by quantitative proteomics

description: Additional file 3. Protein report.
DOI: 10.15468/dl.ak6xsz
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Moluccella olgae (Regel) Ryding"
 ]
}

 The dataset includes 83 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057975-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2uabxj
title: Occurrence Download

description: A dataset containing 8122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 8122 records from 258 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057974-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2sd2b7
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neo-uvaria laosensis Tagane & Soulad."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057976-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5qzdte
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Octarrhena trigona (J.J.Sm.) P.Royen"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057977-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.auv3xn
title: Occurrence Download

description: A dataset containing 10193 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Muscari armeniacum H.J.Veitch"
 ]
}

 The dataset includes 10193 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057978-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25511458
title: Figure 3 Raw Data - 2022-10-30 - 1689

description: 2022-10-30 021320 S PH 50x25um-1689cm-1 2mW-TA 87nm-hBNonRuCl-nanspecdata
DOI: 10.6084/m9.figshare.25511458.v1
title: Figure 3 Raw Data - 2022-10-30 - 1689

description: 2022-10-30 021320 S PH 50x25um-1689cm-1 2mW-TA 87nm-hBNonRuCl-nanspecdata
DOI: 10.15468/dl.mbmhep
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Moluccella otostegioides Prain"
 ]
}

 The dataset includes 12 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057980-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3hr5f
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Octarrhena umbellulata Schltr."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057982-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u3kjb6
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neo-uvaria sparsistellata Chaowasku"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057981-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ebztv
title: Occurrence Download

description: A dataset containing 513 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Moluccella spinosa L."
 ]
}

 The dataset includes 513 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057983-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7mtxyb
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Octarrhena uniflora Schuit. & de Vogel"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057984-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wzcnr8
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neo-uvaria telopea Chaowasku"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057985-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7e7t6a
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Muscari atillae Yildirim"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057986-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rwxy6e
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Octarrhena vanvuurenii J.J.Sm."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057987-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.njmsat
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Momordica angolensis R.Fern."
 ]
}

 The dataset includes 10 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057988-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdsyaa
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neoalsomitra angustipetala (Craib) Hutch."
 ]
}

 The dataset includes 33 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057989-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/7977678
title: US counties COVID 19 dataset
DOI: 10.15468/dl.3zcexz
title: Occurrence Download

description: A dataset containing 971 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Muscari atlanticum Boiss. & Reut."
 ]
}

 The dataset includes 971 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057990-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.