cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6069/j69q-qa52
title: optiPRM: A targeted immunopeptidomics LC-MS workflow with ultra-high sensitivity for the detection of mutation-derived tumor neoepitopes from limited input material

description: Personalized cancer immunotherapies such as therapeutic vaccines and adoptive transfer of T cell receptor (TCR)-transgenic T cells rely on the presentation of tumor-specific peptides by human leukocyte antigen (HLA) class I molecules to cytotoxic T cells. Such neoepitopes can for example arise from somatic mutations and their identification is crucial for the rational design of new therapeutic interventions. Liquid chromatography mass spectrometry (LC-MS)-based immunopeptidomics is the only method to directly prove actual peptide presentation and we have developed a parameter optimization workflow to tune targeted assays for maximum detection sensitivity on a per peptide basis, termed optiPRM. Optimization of collision energy using optiPRM allows for improved detection of low abundant peptides that are very hard to detect using standard parameters. Applying this to immunopeptidomics, we detected a neoepitope in a patient-derived xenograft (PDX) from as little as 2.5×106 cells input. Application of the workflow on small patient tumor samples allowed for the detection of five mutation-derived neoepitopes in three patients. One neoepitope was confirmed to be recognized by patient T cells. In conclusion, optiPRM, a targeted MS workflow reaching ultra-high sensitivity by per peptide parameter optimization, which makes the identification of actionable neoepitopes possible from sample sizes usually available in the clinic.
DOI: 10.5281/zenodo.13269069
title: Skin Cancer
DOI: 10.5281/zenodo.13269070
title: Skin Cancer
DOI: 10.15468/dl.775qe8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((149.914611 -32.681399, 149.916857 -32.681399, 149.916857 -32.679153, 149.914611 -32.679153, 149.914611 -32.681399)), ((149.914611 -32.681399, 149.91012 -32.681399, 149.91012 -32.688136, 149.914611 -32.688136, 149.914611 -32.681399)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055949-240626123714530/datasets/export for details.
DOI: 10.15468/dl.a6tfg2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((144.048585 -37.233634, 144.048585 -37.235879, 144.05083 -37.235879, 144.05083 -37.233634, 144.048585 -37.233634))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055950-240626123714530/datasets/export for details.
DOI: 10.15468/dl.xkjr75
title: Occurrence Download

description: A dataset containing 1725 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is AVJNF: Vilsted Sø, Odonata survey"
 ]
}

 The dataset includes 1725 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055951-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57754/fdat.n659d-e8r84
title: Dutch Adjective-Noun Phrase Dataset for Compositionality Tests (nld-adj-n)

description: If you want to use this dataset for research purposes, please refer to the following sources:
                 - Gertjan Van Noord, Gosse Bouma, Frank Van  Eynde,  Daniël  De  Kok,  Jelmer  Van  der Linde, Ineke Schuurman, Erik Tjong Kim Sang,
                 and Vincent Vandeghinste. 2013. Large Scale Syntactic Annotation of Written Dutch: Lassy. In Essential Speech and Language Technology for Dutch, pages 147–164. Springer.
                 - Corina Dima, Daniël de Kok, Neele Witte, Erhard Hinrichs. 2019. No word is an island — a transformation weighting model for semantic composition. Transactions of the Association for Computational Linguistics.
                 The dataset is distributed under the Creative Commons Attribution NonCommercial (CC-BY-NC) license.
                 The 83,392 Dutch adjective-noun phrases (58,347 train, 16,669 test, 8,376 dev) from this dataset were extracted from the Lassy Large treebank (Van Noord et al., 2013), which consists of written texts (Wikipedia, newspapers) and texts of the medical domain.
                 The train/test/dev files have the following format, the single parts are separated by tab.
                 adjective noun adj-noun phrase, where the adjective and the noun in the phrase are separated by the string _adj_n_ (e.g. politiek verlof politiek_adj_n_verlof).
For results of different composition models on this dataset see Dima et al. (2019) , No word is an island — a transformation weighting model for semantic composition.
The word embeddings were trained on the same treebank and the training corpus consists of 47.6M sentences and 700M tokens. Because adjectives and nouns are separate words, they were concatenated into a single unit (using the separator _adj_n_) for training the phrase representations.
The embeddings were learned with the skip-gram model with negative sampling (Mikolov et al., 2013) from the word2vec package. The embedding size is 200, context size is a symmetric window of 10, 25 negative samples were used and a sample probability of 0.0001.
Representations were only trained for words and phrases with a minimum frequency of 30 occurrences. The embeddings are stored in the binary word2vec format in lassy-adjn-lemmas.bin, which can be loaded by several packages (e.g. the gensim package of Řehůřek, Radim and Petr Sojka (2010)). The vocabulary contains 355,236 words.
DOI: 10.15468/dl.85satx
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is true",
 "TaxonKey is Omocestus haemorrhoidalis (Charpentier, 1825)"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055953-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26093869.v2
title: Example dataset containing Fast5 and BAM files

description: Example data used as inputs of the nanopore artificial deletion filtering tool Delter (https://github.com/nkuyfq/Delter).
DOI: 10.15468/dl.fu5q93
title: Occurrence Download

description: A dataset containing 7396 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pelobates fuscus (Laurenti, 1768)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 7396 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055954-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6wz6ay
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.266195 -32.667924, 148.266195 -32.674662, 148.268441 -32.674662, 148.268441 -32.676907, 148.261703 -32.676907, 148.261703 -32.681399, 148.272932 -32.681399, 148.272932 -32.683645, 148.275178 -32.683645, 148.275178 -32.674662, 148.272932 -32.674662, 148.272932 -32.672416, 148.268441 -32.672416, 148.268441 -32.667924, 148.266195 -32.667924)), ((148.266195 -32.667924, 148.266195 -32.665678, 148.261703 -32.665678, 148.261703 -32.661187, 148.268441 -32.661187, 148.268441 -32.658941, 148.261703 -32.658941, 148.261703 -32.656695, 148.268441 -32.656695, 148.268441 -32.652204, 148.272932 -32.652204, 148.272932 -32.649958, 148.277424 -32.649958, 148.277424 -32.652204, 148.284161 -32.652204, 148.284161 -32.658941, 148.288653 -32.658941, 148.288653 -32.652204, 148.297636 -32.652204, 148.297636 -32.656695, 148.299882 -32.656695, 148.299882 -32.645466, 148.304374 -32.645466, 148.304374 -32.656695, 148.306619 -32.656695, 148.306619 -32.636483, 148.304374 -32.636483, 148.304374 -32.640975, 148.299882 -32.640975, 148.299882 -32.64322, 148.297636 -32.64322, 148.297636 -32.645466, 148.293145 -32.645466, 148.293145 -32.649958, 148.288653 -32.649958, 148.288653 -32.645466, 148.284161 -32.645466, 148.284161 -32.64322, 148.281916 -32.64322, 148.281916 -32.645466, 148.266195 -32.645466, 148.266195 -32.652204, 148.254966 -32.652204, 148.254966 -32.667924, 148.266195 -32.667924)), ((148.272932 -32.683645, 148.268441 -32.683645, 148.268441 -32.688136, 148.272932 -32.688136, 148.272932 -32.683645)), ((148.268441 -32.667924, 148.272932 -32.667924, 148.272932 -32.665678, 148.268441 -32.665678, 148.268441 -32.667924)), ((148.293145 -32.645466, 148.293145 -32.64322, 148.297636 -32.64322, 148.297636 -32.640975, 148.290899 -32.640975, 148.290899 -32.645466, 148.293145 -32.645466)), ((148.304374 -32.636483, 148.304374 -32.634237, 148.299882 -32.634237, 148.299882 -32.636483, 148.304374 -32.636483)), ((148.304374 -32.634237, 148.306619 -32.634237, 148.306619 -32.629746, 148.304374 -32.629746, 148.304374 -32.634237)), ((148.306619 -32.629746, 148.308865 -32.629746, 148.308865 -32.623008, 148.313357 -32.623008, 148.313357 -32.620762, 148.306619 -32.620762, 148.306619 -32.629746)))"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055955-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zrr8sy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((144.872793 -37.235879, 144.872793 -37.242617, 144.87953 -37.242617, 144.87953 -37.238125, 144.877284 -37.238125, 144.877284 -37.235879, 144.872793 -37.235879))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055956-240626123714530/datasets/export for details.
DOI: 10.15468/dl.fqczgt
title: Occurrence Download

description: A dataset containing 82826 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 {
 "not" : {
 "Country" : [
 "is Russian Federation"
 ]
 }
 },
 "TaxonKey is Unionida"
 ]
}

 The dataset includes 82826 records from 560 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055952-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.csdkr6
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.46158 -32.688136, 148.46158 -32.694874, 148.466071 -32.694874, 148.466071 -32.692628, 148.463825 -32.692628, 148.463825 -32.688136, 148.46158 -32.688136)), ((148.46158 -32.688136, 148.46158 -32.683645, 148.457088 -32.683645, 148.457088 -32.688136, 148.46158 -32.688136)), ((148.46158 -32.683645, 148.463825 -32.683645, 148.463825 -32.681399, 148.46158 -32.681399, 148.46158 -32.683645)))"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055957-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fm9r9v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.751907 -37.235879, 147.751907 -37.238125, 147.754153 -37.238125, 147.754153 -37.235879, 147.751907 -37.235879))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055958-240626123714530/datasets/export for details.
DOI: 10.5164/iab.liablm7521.de.en.v1
title: Linked-Employer-Employee-Data of the IAB (LIAB): LIAB longitudinal model 1975-2021, version 1
title: Linked-Employer-Employee-Daten des IAB (LIAB): LIAB-Längsschnittmodell 1975-2021, Version 1
title: LIAB LM 7521 v1

description: The Linked-Employer-Employee-Data of the IAB (LIAB) combine interviews from the IAB Establishment Panel with the related establishment and individual data generated in labour administration and social security data processing. The latter cover administrative establishment information from the Establishment History Panel (BHP) and the employment biographies of individuals employed by the interviewed establishments. The LIAB data allow for simultaneous analysis of the supply and demand side of the German labour market.
description: Die Linked-Employer-Employee-Daten des IAB (LIAB) kombinieren die Interviews des IAB-Betriebspanels mit den zugehörigen Betriebs- und Personendaten aus den Prozessen der Bundesagentur für Arbeit. Letztere umfassen einerseits die administrativen Betriebsinformationen aus dem Betriebs-Historik-Panel (BHP) und andererseits die Erwerbsbiographien der in den interviewten Betrieben beschäftigten Personen. Die LIAB Daten ermöglichen somit eine simultane Analyse der Angebots- und Nachfrageseite des Arbeitsmarktes.
DOI: 10.17630/64ce9540-7c2b-4794-ace3-5d10b8f0d91c
title: Fictional Exoplanets Database for Bayesian Network (thesis data)

description: A collection of 212 fictional exoplanets from works of science fiction across various forms of media, gathered with the assistance of a crowdsourced form. For each exoplanet, the planet name, work of fiction it first appeared in, and year it first appeared are included as metadata. The variables for Bayesian network analysis are as follows: 

1 – AfterDiscovery: Whether the planet first appeared in fiction before (0) or after (1) the discovery of real-life exoplanets around sun-like stars in 1995.
2 – HabZone: Whether the planet is shown to be in the liquid-water habitable zone (1) or outside it (0).
3 – RealStar: Whether the planet is portrayed as being part of a real star system (1) or not (0).
4 – Life: Whether the planet is home to native life (1) or not (0).
5 – Intelligent: Whether the planet is home to intelligent native life (1) or not (0).
6 – HumansBreathe: Whether human characters can breathe the planet’s atmosphere without assistance or ill effect (1) or not (0).
7 – MediaType: Whether the planet originally appeared in a film (0), a book (1), a TV show (2), a video game (3), or a podcast (4).
8 – IsGas: Whether the planet is Earth-like and rocky/terrestrial (0) or Jupiter-like and gaseous (1). This simplifies the broader range of discovered exoplanets, classifying Super-Earths with terrestrial and sub-Neptunes with gaseous.
9 – EstNonNativeHumans: Whether the planet has been colonised by an established population of non-native humans who have been there for hundreds or thousands of years (1) or not (0).
DOI: 10.15468/dl.gspzy6
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong, Macao, Chinese Taipei)",
 "TaxonKey is Ischaemum anthephoroides (Steud.) Miq."
 ]
}

 The dataset includes 30 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003961-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7te6hb
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Catagonus wagneri (Rusconi, 1930)"
 ]
}

 The dataset includes 53 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003962-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eb6xzf
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong, Macao, Chinese Taipei)",
 "TaxonKey is Melinis minutiflora P.Beauv."
 ]
}

 The dataset includes 25 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003963-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3m9bpz
title: Occurrence Download

description: A dataset containing 1582 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Specimen)",
 "Geometry POLYGON((-79.82033 -5.40302,-79.31692 -5.40302,-79.31692 -4.23578,-79.82033 -4.23578,-79.82033 -5.40302))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amphibia"
 ]
}

 The dataset includes 1582 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003965-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wzzh45
title: Occurrence Download

description: A dataset containing 3935661 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "or" : [
 "KingdomKey is Animalia",
 "KingdomKey is Fungi",
 "KingdomKey is Plantae"
 ]
 },
 {
 "not" : {
 "SpeciesKey" : [
 "is null"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "Country is American Samoa",
 "Country is Cook Islands",
 "Country is Fiji",
 "Country is French Polynesia",
 "Country is Guam",
 "Country is Kiribati",
 "Country is Marshall Islands",
 "Country is Micronesia (Federated States of)",
 "Country is Nauru",
 "Country is New Caledonia",
 "Country is Niue",
 "Country is Norfolk Island",
 "Country is Northern Mariana Islands",
 "Country is Palau",
 "Country is Papua New Guinea",
 "Country is Pitcairn",
 "Country is Samoa",
 "Country is Solomon Islands",
 "Country is Tokelau",
 "Country is Tonga",
 "Country is Tuvalu",
 "Country is United States Minor Outlying Islands",
 "Country is Vanuatu",
 "Country is Wallis and Futuna"
 ]
 }
 ]
}

 The dataset includes 3935661 records from 1317 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003964-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14058574
title: TFBS.list
DOI: 10.5281/zenodo.14058575
title: TFBS.list
DOI: 10.15468/dl.f8d4cv
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Living Specimen, Specimen, Human Observation)",
 "Geometry POLYGON((104.22667 9.84204,120.07412 15.14859,122.78154 23.77625,121.59028 25.72559,112.16845 23.95674,100.68897 22.76547,104.22667 9.84204))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Keteleeria Carrière"
 ]
}

 The dataset includes 230 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003966-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15485/2335384
title: Hestia SW-IFL Onroad Fossil Fuel Carbon Dioxide (FFCO2) product: Road segment-level annual FFCO2 emissions across Arizona (2017-2022), version 1.1

description: The SW-IFL onroad fossil fuel carbon dioxide (FFCO2) emissions data product represents CO2 emissions from the combustion of fossil fuels by motor vehicles (e.g., passenger cars, trucks, buses, motorcycles) traveling on designated roadways. The emissions are represented geographically on each road segment within the state of Arizona spanning the 2017 to 2022 time period. This data product was developed as part of the Southwest Urban Corridor Integrated Field Laboratory (SW-IFL) project, which aims to provide new knowledge and tools that address urban environmental issues by integrating high-resolution observations, modeling, and civic engagement. The emissions data are provided in CSV (input data, ONR_FFCO2_AZ_county.csv) and GeoPackage form (output polyline objects - about 786,000 road segments, XXXX_AZ_v1.1.gpkg) designated by road class (interstates, arterials, collectors, local). The metadata file (Metadata_SW-IFL_Onroad_annualFFCO2_v1.1.docx) provides details about attributes and data formats. The GeoPackage emissions data are provided separately for local roads and nonlocal roads (interstates, arterials, collectors). The method file (Methods_SW-IFL_Onroad_annualFFCO2_v1.1.docx) describes the data processing flow and data sources. Update on 2024-04-17: Updates were made to both the input emission data file (.csv) and output segment-level emission file (.gpkg). There was an update in county-level emission input data (ONR_FFCO2_AZ_county.csv) and the entire road segments were reprocessed to reflect this update.Update on 2024-04-29: Update was made to one output segment-level emission file (Nonlocal_AZ_v1.0.gpkg). There was an error in the AADT values and the data were reprocessed to reflect this update.Update on 2024-10-22: Temporal coverage was extended to include 2022. VMT values were recalculated using new AADT data and the entire road segments were reprocessed to reflect these updates.
DOI: 10.6084/m9.figshare.27058822
title: Manganese geochemical cycling driven by fluctuating redox chemocline in the Ediacaran ocean

description: The oceanic redox configuration was stratified and oscillational in continental marginal slope during the deposition of Ediacaran Doushantuo FormationThe paleoclimate variations influenced basin hydrochemistry and organism activity to trigger the fluctuations of redox chemoclineThe fluctuations of the redox chemocline in slope regulated the unique Mn cycling and mineralization in the late Ediacaran ocean
DOI: 10.6084/m9.figshare.27369138
title: sars-cov2.fa.gz

description: test
DOI: 10.6084/m9.figshare.27369138.v1
title: sars-cov2.fa.gz

description: test
DOI: 10.25584/2476481
title: MHTLS Cross-flow Heat Exchanger Temperature Performance Data

description: The presentation and supporting information provide data on the performance of an engineering-scale cross-flow heat exchanger used in hydrothermal liquefaction (HTL). Temperature profiles are provide for the process of waste water treatment sludges and a food waste. The data can be used to model larger-scale heat exchangers used in HTL.
DOI: 10.25584/2476482
title: Rheology Investigations with Sludges from Metro Vancouver (Annacis Island Plant) Revision 1

description: Rheological investigation were performed with primary and secondary waste water treatment sludge. Using a rheometer equipped with a high pressure/temperature cell, flow curves were generated over shear rate at 0 to 1000 s-1. Temperature sweeps spanning 25 to 300 C were also performed are are reported here.
The original release, PNNL-SA-185826, is being revised. The revision include a revision table, a disclaimer, and the underlying data set is being added.