cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5149062
title: Dataset for deep-learning in-situ classification of HIV-1 virion morphology

description: This dataset contains TEM micrographs for HIV-1 virion samples intended for classification and detection as follows: HIV-1_virion_classification_backbone_dataset.zip : Contains 1806 .tif images of isolated HIV-1 virions extracted and augmented from TEM micrographs. The images are divided into training (1443 images) and validation (363 images) sets and each of these is divided into eccentric, mature, immature labeled folders: HIV-1_virion_classification_backbone_dataset/ train/ eccentric/ immature/ mature/ val/ eccentric/ immature/ mature/ HIV-1_rcnn_dataset_full.zip : Contains 59 .tif TEM micrographs of HIV-1 samples as well as a matching .csv file recording the attributes of each viral instance and coordinates of the rectangular region that contains it: region_data_&lt;image_id&gt;.csv: filename: Name of the image this csv refers to. (Ex: 0131001.png) file_size: Size (bytes) of the image this csv refers to. (Ex: 11755590) file_attributes: Specific attributes of the micrograph. (Ex: None) region_count: Number of viral instances detected in the micrograph. (Ex: 39) region_id: ID of a specific viral region. (Ex: 1) region_shape_attributes: Coordinates of the bounding box of &lt;region_id&gt; that contains a virion. (Ex: {"name":"rect","x":1022,"y":357,"width":225,"height":228}) region_attributes: Classification of the virion enclosed in this region (eccentric/mature/immature). (Ex: {"particle_class":"mature"}) The images are divided into training (46 images) and validation (13 images) sets and each of these contains folder for each micrograph: HIV-1_rcnn_dataset_full/ train/ 0131001/ 0131001.png region_data_0131001.csv 0131004/ 0131004.png region_data_0131004.csv … val/ 0131002/ 0131002.png region_data_0131002.csv 0131003/ 0131003.png region_data_0131003.csv … The first dataset (HIV-1_virion_classification_backbone_dataset.zip) is intended for viral classification algorithms while the second dataset (HIV-1_rcnn_dataset_full) is intended for detection and segmentation algorithms (for example RCNN). Applications of this dataset as well as source code can be found at https://github.com/Perilla-lab/TEMNet .
DOI: 10.5281/zenodo.5149061
title: Dataset for deep-learning in-situ classification of HIV-1 virion morphology

description: This dataset contains TEM micrographs for HIV-1 virion samples intended for classification and detection as follows: HIV-1_virion_classification_backbone_dataset.zip : Contains 1806 .tif images of isolated HIV-1 virions extracted and augmented from TEM micrographs. The images are divided into training (1443 images) and validation (363 images) sets and each of these is divided into eccentric, mature, immature labeled folders: HIV-1_virion_classification_backbone_dataset/ train/ eccentric/ immature/ mature/ val/ eccentric/ immature/ mature/ HIV-1_rcnn_dataset_full.zip : Contains 59 .tif TEM micrographs of HIV-1 samples as well as a matching .csv file recording the attributes of each viral instance and coordinates of the rectangular region that contains it: region_data_&lt;image_id&gt;.csv: filename: Name of the image this csv refers to. (Ex: 0131001.png) file_size: Size (bytes) of the image this csv refers to. (Ex: 11755590) file_attributes: Specific attributes of the micrograph. (Ex: None) region_count: Number of viral instances detected in the micrograph. (Ex: 39) region_id: ID of a specific viral region. (Ex: 1) region_shape_attributes: Coordinates of the bounding box of &lt;region_id&gt; that contains a virion. (Ex: {"name":"rect","x":1022,"y":357,"width":225,"height":228}) region_attributes: Classification of the virion enclosed in this region (eccentric/mature/immature). (Ex: {"particle_class":"mature"}) The images are divided into training (46 images) and validation (13 images) sets and each of these contains folder for each micrograph: HIV-1_rcnn_dataset_full/ train/ 0131001/ 0131001.png region_data_0131001.csv 0131004/ 0131004.png region_data_0131004.csv … val/ 0131002/ 0131002.png region_data_0131002.csv 0131003/ 0131003.png region_data_0131003.csv … The first dataset (HIV-1_virion_classification_backbone_dataset.zip) is intended for viral classification algorithms while the second dataset (HIV-1_rcnn_dataset_full) is intended for detection and segmentation algorithms (for example RCNN). Applications of this dataset as well as source code can be found at https://github.com/Perilla-lab/TEMNet .
DOI: 10.6084/m9.figshare.15079077
title: Lipinski Drug Set (max_seq = 113, vocab=30)

description: Lipinski filtered, no charge, no radical, atom list limited (Molecules can only have 'C H O N S P N F Cl Br I' atoms.), and semantically filtered (SELFIES cannot have '+' or '-' in token), onehot and labeled with stoi/itos respectively pickle dictionary.<br>
DOI: 10.6084/m9.figshare.15079077.v2
title: Lipinski Drug Set (max_seq = 113, vocab=30)

description: Lipinski filtered, no charge, no radical, atom list limited (Molecules can only have 'C H O N S P N F Cl Br I' atoms.), and semantically filtered (SELFIES cannot have '+' or '-' in token), onehot and labeled with stoi/itos respectively pickle dictionary.<br>
DOI: 10.6084/m9.figshare.15079077.v1
title: Lipinski Drug Set (max_seq = 113, vocab=30)

description: Lipinski filtered, no charge, no radical, atom list limited (Molecules can only have 'C H O N S P N F Cl Br I' atoms.), and semantically filtered (SELFIES cannot have '+' or '-' in token) pickle dictionary.<br>
DOI: 10.15468/zegdb2
title: Limonium poimenum (Plumbaginaceae), a new chasmophyte species from Sicily

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ilardi, Vincenzo, Brullo, Salvatore, Cusimano, Dario, Galdo, Gianpietro Giusso Del (2014): Limonium poimenum (Plumbaginaceae), a new chasmophyte species from Sicily. Phytotaxa 188 (5): 268-274, DOI: 10.11646/phytotaxa.188.5.4, URL: http://dx.doi.org/10.11646/phytotaxa.188.5.4
DOI: 10.25921/a4m9-fa81
title: EK80 Water Column Sonar Data Collected During SD1043-2020-01
DOI: 10.6084/m9.figshare.15085506.v1
title: Nematode abundance’s affect on multiple herbivore performance and plant quality

description: This study aimed to understand how the abundance of nematodes in the soil affect plant quality, as well as herbivory in milkweed and dogbane. 61 plants were marked in experimental successional fields at Blandy Experimental Farm in 2021. 200cc of soil were taken from the marked plants as well measures of plant quality (i.e. plant height, leaf count, leaf damage, amount of latex present). Some leaves were collected for conducting herbivore bioassays to attempt to assess plant quality. The herbivores used for Dogbane plants were Dogbane beetles and Dogbane tiger moth larvae and the herbivores used for Milkweed plants were Red Milkweed Beetles, Monarch larvae, and Dogbane Tiger Moths. The data collected will be used to see if there are any correlations between nematode abundance and plant quality and/or herbivory.
DOI: 10.23641/asha.6170171
title: Auditory Neuropathy Spectrum Disorder in Children (Roush et al., 2011)

description: <b>Purpose </b>This review summarizes current evidence related to the audiologic management of children with auditory neuropathy spectrum disorder (ANSD). <br><b>Method </b>A systematic search of the literature was conducted in 25 electronic databases (e.g., PubMed, CINAHL, and ERIC) using key words such as auditory neuropathy, auditory neuropathy spectrum disorder, auditory neuropathy/dyssynchrony, and hearing loss. Eighteen studies met the inclusion criteria by addressing 1 or more of 8 clinical questions. Studies were evaluated for methodological quality, and data regarding participant, intervention, and outcome variables are reported. <br><b>Results </b>Fifteen of the 18 studies addressed the use of cochlear implantation, and 4 addressed conventional acoustic amplification. All participants demonstrated improved auditory performance; however, all 18 studies were considered exploratory, and many had methodological limitations. <br><b>Conclusion </b>The clinical evidence related to intervention for ANSD is at a very preliminary stage. Additional research is needed to address the efficacy of acoustic amplification and cochlear implantation in children with ANSD and the impact of this disorder on developmental outcomes.
DOI: 10.23641/asha.6170171.v1
title: Auditory Neuropathy Spectrum Disorder in Children (Roush et al., 2011)

description: <b>Purpose </b>This review summarizes current evidence related to the audiologic management of children with auditory neuropathy spectrum disorder (ANSD). <br><b>Method </b>A systematic search of the literature was conducted in 25 electronic databases (e.g., PubMed, CINAHL, and ERIC) using key words such as auditory neuropathy, auditory neuropathy spectrum disorder, auditory neuropathy/dyssynchrony, and hearing loss. Eighteen studies met the inclusion criteria by addressing 1 or more of 8 clinical questions. Studies were evaluated for methodological quality, and data regarding participant, intervention, and outcome variables are reported. <br><b>Results </b>Fifteen of the 18 studies addressed the use of cochlear implantation, and 4 addressed conventional acoustic amplification. All participants demonstrated improved auditory performance; however, all 18 studies were considered exploratory, and many had methodological limitations. <br><b>Conclusion </b>The clinical evidence related to intervention for ANSD is at a very preliminary stage. Additional research is needed to address the efficacy of acoustic amplification and cochlear implantation in children with ANSD and the impact of this disorder on developmental outcomes.
DOI: 10.5519/qd.m2pm6sfd
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1050 records)
DOI: 10.5281/zenodo.4915807
title: Clusters of cause specific neonatal mortality and its association with per capita gross domestic product: a structured spatial analytical approach

description: Database used for the analysis of the manuscript entitled: Clusters of cause specific neonatal mortality and its association with per capita gross domestic product: a structured spatial analytical approach. The aim of the study was to investigate the cluster areas of asphyxia-associated neonatal mortality and to explore the per capita gross domestic product (GDP) as an associated risk factor in São Paulo State (SP), Brazil.
description: Fundação de Amparo à Pesquisa de São Paulo - FAPESP, Project # 2017/03748-7
DOI: 10.5281/zenodo.4915806
title: Clusters of cause specific neonatal mortality and its association with per capita gross domestic product: a structured spatial analytical approach

description: Database used for the analysis of the manuscript entitled: Clusters of cause specific neonatal mortality and its association with per capita gross domestic product: a structured spatial analytical approach. The aim of the study was to investigate the cluster areas of asphyxia-associated neonatal mortality and to explore the per capita gross domestic product (GDP) as an associated risk factor in São Paulo State (SP), Brazil.
description: Fundação de Amparo à Pesquisa de São Paulo - FAPESP, Project # 2017/03748-7
DOI: 10.5519/qd.xm8a2nsl
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (788 records)
DOI: 10.23641/asha.6170174
title: Identification of Acoustically Similar and Dissimilar Vowels in Profoundly Deaf Adults Who Use Hearing Aids and/or Cochlear Implants (Hay-McCutcheon et al., 2014)

description: <b>Purpose </b>In this study, the authors examined the effects of aging and residual hearing on the identification of acoustically similar and dissimilar vowels in adults with postlingual deafness who use hearing aids (HAs) and/or cochlear implants (CIs).<b>Method </b>The authors used two groups of acoustically similar and dissimilar vowels to assess vowel identification. Also, the Consonant–Nucleus–Consonant Word Recognition Test (Peterson & Lehiste, 1962) and sentences from the Hearing in Noise Test (Nilsson, Soli, & Sullivan, 1994) were administered. Forty CI recipients with postlingual deafness (ages 31–81 years) participated in the study.<br><b>Results </b>Acoustically similar vowels were more difficult to identify than acoustically dissimilar vowels. With increasing age, performance deteriorated when identifying acoustically similar vowels. Vowel identification was also affected by the use of a contralateral HA and the degree of residual hearing prior to implantation. Moderate correlations were found between speech perception and vowel identification performance.<br><b>Conclusions </b>Identification performance was affected by the acoustic similarity of the vowels. Older adults experienced more difficulty identifying acoustically similar confusable vowels than did younger adults. The findings might lend support to the ease of language understanding model (Ronnberg, Rudner, Foo, & Lunner, 2008), which proposes that the quality and perceptual robustness of acoustic input affects speech perception.<br>
DOI: 10.23641/asha.6170174.v1
title: Identification of Acoustically Similar and Dissimilar Vowels in Profoundly Deaf Adults Who Use Hearing Aids and/or Cochlear Implants (Hay-McCutcheon et al., 2014)

description: <b>Purpose </b>In this study, the authors examined the effects of aging and residual hearing on the identification of acoustically similar and dissimilar vowels in adults with postlingual deafness who use hearing aids (HAs) and/or cochlear implants (CIs).<b>Method </b>The authors used two groups of acoustically similar and dissimilar vowels to assess vowel identification. Also, the Consonant–Nucleus–Consonant Word Recognition Test (Peterson & Lehiste, 1962) and sentences from the Hearing in Noise Test (Nilsson, Soli, & Sullivan, 1994) were administered. Forty CI recipients with postlingual deafness (ages 31–81 years) participated in the study.<br><b>Results </b>Acoustically similar vowels were more difficult to identify than acoustically dissimilar vowels. With increasing age, performance deteriorated when identifying acoustically similar vowels. Vowel identification was also affected by the use of a contralateral HA and the degree of residual hearing prior to implantation. Moderate correlations were found between speech perception and vowel identification performance.<br><b>Conclusions </b>Identification performance was affected by the acoustic similarity of the vowels. Older adults experienced more difficulty identifying acoustically similar confusable vowels than did younger adults. The findings might lend support to the ease of language understanding model (Ronnberg, Rudner, Foo, & Lunner, 2008), which proposes that the quality and perceptual robustness of acoustic input affects speech perception.<br>
DOI: 10.5281/zenodo.4265110
title: Modified version of intronIC for classifying U12-type introns in Physarum polycephalum

description: A modified version of intronIC with position-specific BPS score weighting to reflect the unique U12-type BPS motif found in <em>Physarum</em>. See the README inside the included directory for instructions on recreating the intron classifications present in the manuscript. IMPORTANT UPDATE (08/2021): There is a typo in the README file within the archive—in order to run the program correctly, the argument flags "-r12" and "-r2" need to be inverted from how they are listed in the example command. In other words, the "-r12" flag needs to be placed where the "-r2" flag is, and vice-versa. Apologies for the error!
DOI: 10.5281/zenodo.4265109
title: Modified version of intronIC for classifying U12-type introns in Physarum polycephalum

description: A modified version of intronIC with position-specific BPS score weighting to reflect the unique U12-type BPS motif found in <em>Physarum</em>. See the README inside the included directory for instructions on recreating the intron classifications present in the manuscript. IMPORTANT UPDATE (08/2021): There is a typo in the README file within the archive—in order to run the program correctly, the argument flags "-r12" and "-r2" need to be inverted from how they are listed in the example command. In other words, the "-r12" flag needs to be placed where the "-r2" flag is, and vice-versa. Apologies for the error!
DOI: 10.23641/asha.6170186
title: Revised Conceptual Framework of Parent-to-Parent Support for Parents of Children Who Are Deaf or Hard of Hearing (Henderson et al., 2016)

description: <b>Background </b>A scoping review of the literature was conducted, resulting in the development of a conceptual framework of parent-to-parent support for parents with children who are Deaf or hard of hearing. This is the 2nd stage of a dual-stage scoping review.<b>Purpose </b>This study sought stakeholder opinion and feedback with an aim to achieve consensus on the constructs, components, and design of the initial conceptual framework.<br><b>Research </b>Design A modified electronic Delphi study was completed with 21 handpicked experts from 7 countries who have experience in provision, research, or experience in the area of parent-to-parent support. Participants completed an online questionnaire using an 11-point Likert scale (<i>strongly disagree</i> to <i>strongly agree</i>) and open-ended questions to answer various questions related to the descriptor terms, definitions, constructs, components, and overall design of the framework.<br><b>Results </b>Participant responses led to the revision of the original conceptual framework.<br><b>Conclusion </b>The findings from this dual-stage scoping review and electronic Delphi study provide a conceptual framework that defines the vital contribution of parents in Early Hearing Detection and Intervention programs that will be a useful addition to these programs.<br>
DOI: 10.23641/asha.6170186.v1
title: Revised Conceptual Framework of Parent-to-Parent Support for Parents of Children Who Are Deaf or Hard of Hearing (Henderson et al., 2016)

description: <b>Background </b>A scoping review of the literature was conducted, resulting in the development of a conceptual framework of parent-to-parent support for parents with children who are Deaf or hard of hearing. This is the 2nd stage of a dual-stage scoping review.<b>Purpose </b>This study sought stakeholder opinion and feedback with an aim to achieve consensus on the constructs, components, and design of the initial conceptual framework.<br><b>Research </b>Design A modified electronic Delphi study was completed with 21 handpicked experts from 7 countries who have experience in provision, research, or experience in the area of parent-to-parent support. Participants completed an online questionnaire using an 11-point Likert scale (<i>strongly disagree</i> to <i>strongly agree</i>) and open-ended questions to answer various questions related to the descriptor terms, definitions, constructs, components, and overall design of the framework.<br><b>Results </b>Participant responses led to the revision of the original conceptual framework.<br><b>Conclusion </b>The findings from this dual-stage scoping review and electronic Delphi study provide a conceptual framework that defines the vital contribution of parents in Early Hearing Detection and Intervention programs that will be a useful addition to these programs.<br>
DOI: 10.23641/asha.6170183
title: Children With Cochlear Implants and With Typical Hearing (Iglehart, 2016)

description: <b>Purpose </b>This study measured speech perception ability in children with cochlear implants and children with typical hearing when listening across ranges of reverberation times (RTs) and speech-to-noise ratios. <br><b>Method </b>Participants listened in classroom RTs of 0.3, 0.6, and 0.9 s combined with a 21-dB range of speech-to-noise ratios. Subsets also listened in a low-reverberant audiological sound booth. Performance measures using the Bamford-Kowal-Bench Speech-in-Noise Test (Etymotic Research, Inc., 2005) were 50% correct word recognition across these acoustic conditions, with supplementary analyses of percent correct. <br><b>Results </b>Reduction in RT from 0.9 to 0.6 s benefited both groups of children. A further reduction in RT to 0.3 s provided additional benefit to the children with cochlear implants, with no further benefit or harm to those with typical hearing. Scores in the sound booth were significantly higher for the participants with implants than in the classroom. <b>Conclusions </b>These results support the acoustic standards of 0.6 s RT for children with typical hearing and 0.3 s RT for children with auditory issues in learning spaces (?283 m3) as specified in standards S12.60-2010/Part 1 of the American National Standards Institute /Acoustical Society of America (2010) . In addition, speech perception testing in a low-reverberant booth overestimated classroom listening ability in children with cochlear implants.
DOI: 10.23641/asha.6170183.v1
title: Children With Cochlear Implants and With Typical Hearing (Iglehart, 2016)

description: <b>Purpose </b>This study measured speech perception ability in children with cochlear implants and children with typical hearing when listening across ranges of reverberation times (RTs) and speech-to-noise ratios. <br><b>Method </b>Participants listened in classroom RTs of 0.3, 0.6, and 0.9 s combined with a 21-dB range of speech-to-noise ratios. Subsets also listened in a low-reverberant audiological sound booth. Performance measures using the Bamford-Kowal-Bench Speech-in-Noise Test (Etymotic Research, Inc., 2005) were 50% correct word recognition across these acoustic conditions, with supplementary analyses of percent correct. <br><b>Results </b>Reduction in RT from 0.9 to 0.6 s benefited both groups of children. A further reduction in RT to 0.3 s provided additional benefit to the children with cochlear implants, with no further benefit or harm to those with typical hearing. Scores in the sound booth were significantly higher for the participants with implants than in the classroom. <b>Conclusions </b>These results support the acoustic standards of 0.6 s RT for children with typical hearing and 0.3 s RT for children with auditory issues in learning spaces (?283 m3) as specified in standards S12.60-2010/Part 1 of the American National Standards Institute /Acoustical Society of America (2010) . In addition, speech perception testing in a low-reverberant booth overestimated classroom listening ability in children with cochlear implants.
DOI: 10.5066/p9pn5bmk
title: Oblique Thermal Imaging of the Pisgah Lava Field, California Acquired March 2010

description: As part of a NASA-funded study of diurnal thermal imaging at a Mars analog site, we conducted simultaneous oblique thermal imaging and in situ temperature measurements within two regions of interest on the Pisgah lava field, near Ludlow, California. Both regions of interest contained either cave or cave-like alcoves. Data released in this report was collected from 03/23/2010 to 03/25/2010. The experiment was conducted at Pisgah lava field, which is located about 175 miles northeast of Los Angeles on Bureau of Land Management lands. Consisting of Quaternary basaltic lava and a cinder cone superimposed on alluvial deposits and lacustrine sediments of Lavic Lake playa (Dibblee, 1966), the flow is approximately 21,000 years old (Wise 1969)]. Extending ~18km to the west and 8 km to the southeast from the Pisgah cinder cone (Harter 2009), three eruption phases emitted both pahoehoe and a'a lava, which vary in thickness from 1 to 5 meters across the field (Gaddis, 1994). In addition to the lava flows, sections of the landscape were punctuated by desert pavements and sand deposits, which make the area ideal for thermal imaging of a range thermal physical properties. The cinder cone provided an appropriate vantage point for oblique imagery acquisition of the lava field. Thermal imaging of each ROI was conducted on consecutive days. Imagery was collected for the B-Cave ROI first and was more oblique than the Station 7 Trench ROI, which was acquired the next day.