cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.g0f4hv0/8
title: GZO-37_merged.fastq

description: First part of the merged forward and reverse reads for the Polar Urals core.
DOI: 10.5061/dryad.ht3823d/1
title: alignments of universal nuclear protein-coding loci and Perl script for BLAST

description: 1. Alignment of 48species at 65genes; 2. Alignment of the four populations of Kentish Plover at 19 genes; 3. Partition of 48species at 65 genes; 4. Partition of the four populations of Kentish Plover at 19 genes; 5.Perl Script for BLAST
DOI: 10.5061/dryad.jp1f0n5/4
title: F and MLH Estimates Adult Candidates

description: Two estimators of inbreeding coefficient (F) and three estimators of multi-locus heterozygosity (MLH) - standardized heterozygosity (SH), internal relatedness (IR) and homozygosity by locus (HL) - calculated from the genotypes of all adult candidates using COANCESTRY and the R package, 'Rhh,' respectively.
DOI: 10.5061/dryad.jp1f0n5/5
title: F and MLH Estimaes of Hatchlings

description: Two estimators of inbreeding coefficient (F) and three estimators of multi-locus heterozygosity (MLH) - standardized heterozygosity (SH), internal relatedness (IR) and homozygosity by locus (HL) - calculated from the genotypes of all hatchlings using COANCESTRY and the R package, 'Rhh,' respectively.
DOI: 10.5061/dryad.k871qr2/2
title: Codes to run the analyses
DOI: 10.5061/dryad.p9m57n7/10
title: Local sunrise and sunset data
DOI: 10.5061/dryad.p9m57n7/11
title: R script to make all raw data ready for analysis

description: The script requires the raw data in csv format and data on sunrise/sunset times. The script truncates the data correctly, removes false values, renames variables and saves all data as all.Data.RData
DOI: 10.5061/dryad.p9m57n7/12
title: R script to carry out statistical analyses and produce figures

description: This r script opens the file all.Data.RData (produced via the script 1_prepare_data.R) and conducts all statistical analyses and figures.
DOI: 10.5061/dryad.p9m57n7/2
title: Raw data of cultivation no. 6
DOI: 10.5061/dryad.p9m57n7/6
title: Raw data for cultivation no. 5
DOI: 10.5061/dryad.p9m57n7/7
title: Raw data for cultivation no. 7
DOI: 10.5061/dryad.p9m57n7/8
title: Raw data for cultivation no. 8
DOI: 10.5061/dryad.p9m57n7/9
title: Raw data for cultivation no. 9
DOI: 10.5061/dryad.pj319sn.1/2.1
title: Fig 2 data-flight buzz volume over time during eclipse

description: bee flight buzz counts referenced by eclipse phases.
DOI: 10.5061/dryad.v188909/4
title: SexySperm.PartC.Males

description: Data from Part C of the experiment - long-form data for post-hoc analyses of focal male weights
DOI: 10.5061/dryad.v188909/5
title: SexySperm.PropRemating

description: Data from Part C of the experiment - data for focal females to determine the proportion of females that remated in the competitive double matings
DOI: 10.5061/dryad.v188909/6
title: SexySperm.Code

description: R code for data analysis
DOI: 10.5061/dryad.v7k54df/1
title: raw data: FCM, distance based and elliptic Fourier morphometrics

description: raw data
DOI: 10.17632/ycw24zjwz7.1
title: Data for: Street Rabies Virus Strains Associated with Insectivorous Bats are Less Pathogenic than Isolated from Other Reservoirs

description: In vivo and in vitro studies
DOI: 10.5061/dryad.155kb26.1
title: Data from: Intraspecific trait variation increases species diversity in a trait-based grassland model
DOI: 10.5061/dryad.155kb26.1/1.1
title: IBC-grass

description: Simulated datasets and their corresponding analyses (deriving the paper's graphs) from IBC-grass. Please note that the file paths in each script must be set, pointing to both the Util.R script (some utility functions each analysis script uses) as well as to the .Rda data files themselves.
DOI: 10.5061/dryad.155kb26.2
title: Data from: Intraspecific trait variation increases species diversity in a trait-based grassland model
DOI: 10.5061/dryad.155kb26.2/1.2
title: IBC-grass

description: Simulated datasets and their corresponding analyses (deriving the paper's graphs) from IBC-grass. Please note that the file paths in each script must be set, pointing to both the Util.R script (some utility functions each analysis script uses) as well as to the .Rda data files themselves.
DOI: 10.5061/dryad.19tb3dp/1
title: Extracted data from literature on soil organism responses to fire

description: The file contains data on soil organism biomass, abundance, richness, evenness, and diversity in burned and unburned soils extracted from peer reviewed publications published between 1988 and 2016 for use in meta-analysis. Soil organisms include bacteria, fungi, nematodes, protozoa, and arthropods. The file contains three sheets: (1) a read me file describing the contents of data sheets and columns therein; (2) a list of all published studies from which data was extracted for meta-analysis including first author, publication year, and journal; (3) a data file containing all data and accompanying information extracted from each publication. The contents of all columns are described in the ReadMe tab and file.
DOI: 10.5061/dryad.1nq73/1
title: RALUNoSibs

description: Microsatellite data for individuals
DOI: 10.5061/dryad.1nq73/2
title: RALUNoSibs_GPS

description: Population locations.
DOI: 10.5061/dryad.27v6086/1
title: Prey and Spider Abundance

description: The abundance of Peucetia viridans and their hymenoptera prey were collected at the Savannah River Site near Aiken, SC, USA. Data were collected in 8 experimental blocks; with 3 patch shapes each block. Data were collected in the summer of 2013. Details of experimental design found in Hawn, C.L., Herrmann, J.D., Griffin, S.R., and N. M. Haddad. 2018. Connectivity increases trophic subsidies in fragmented landscapes. Ecology Letters.
DOI: 10.5061/dryad.27v6086/2
title: Spider body condition

description: The body condition of Peucetia viridans collected at the Savannah River Site near Aiken, SC, USA. Data were collected in 8 experimental blocks; with 3 patch shapes each block. Data were collected in the summer of 2013. Details of experimental design found in Hawn, C.L., Herrmann, J.D., Griffin, S.R., and N. M. Haddad. 2018. Connectivity increases trophic subsidies in fragmented landscapes. Ecology Letters.
DOI: 10.5061/dryad.27v6086/3
title: Delta 15N enrichment

description: The change in delta 15N between Peucetia viridans collected before the spray treatment (2011) and those collected after the treatment (2013) at the Savannah River Site near Aiken, SC, USA. Data were collected in 8 experimental blocks; with 3 patch shapes each block. Data were collected in the summer of 2013. Details of experimental design found in Hawn, C.L., Herrmann, J.D., Griffin, S.R., and N. M. Haddad. 2018. Connectivity increases trophic subsidies in fragmented landscapes. Ecology Letters.
DOI: 10.5061/dryad.46cn27g/1
title: Coster_CLRAintrogression_SNPgenotypes_07262018

description: King (Rallus elegans, KIRA) and Clapper (Rallus crepitans, CLRA) rail samples genotyped at 13 species-diagnostic SNP markers. Data includes id, site number (corresponding to Figure 2), site name, and genotypes. Genotypes are identified as follows: 1=A, 2= T, 3=C, 4=G, and 0 indicates no genotype was assigned.
DOI: 10.5061/dryad.50s5g5q/1
title: SNPsData170804_Heliopora_0.7

description: This includes 3 different SNPs Dataset in each Tab (MIG-seq Original Data(166), Mapped (146), Unmapped(20)) includes SNPs obtained from MIG-seq analysis.
DOI: 10.5061/dryad.5161828/1
title: Rowntree_JEcol-2018-0066.R1_data_analysis_R_code

description: R script for analyses in Rowntree & Craig, Journal of Ecology (JEcol-2018-0066.R1)
DOI: 10.5061/dryad.5161828/2
title: Rowntree_Biomass2012

description: 2012 plant host biomass data and treatment identifiers corresponding to associated R script
DOI: 10.5061/dryad.5161828/3
title: Rowntree_Biomass2013

description: 2013 plant host biomass, R. minor data and treatment identifiers corresponding to associated R script
DOI: 10.5061/dryad.5161828/4
title: Rowntree_Biomass2014

description: 2014 plant host biomass, R. minor data and treatment identifiers corresponding to associated R script
DOI: 10.5061/dryad.5161828/5
title: Rowntree_spp_gain

description: Species change over the course of the experiment and treatment identifiers corresponding to associated R script
DOI: 10.5061/dryad.5d48n33/6
title: data_zebra_encounter_risk_Dry

description: Zebra data used to assess the relative effect of diel migration and change in vegetation cover on decrease in encounter risk with lions during the dry season. id = individual ID ; daytrack = the daytrack ID ; median_distwater_day = the median distance to waterhole (in km) over all GPS locations at day in a given daytrack ; median_distwater_night = the median distance to waterhole (in km) over all GPS locations at night in a given daytrack ; daytime_risk = actual daytime risk (situation 1) ; nighttime_risk_no_adjustment = hypothetical nighttime risk in absence of behavioural adjustments (situation 3) ; nighttime_risk_dm = hypothetical nighttime risk with diel migration only (situation 4) ; nighttime_risk = actual nighttime risk (situation 2) ; DM = diel migration away from waterholes in km
DOI: 10.5061/dryad.5d48n33/7
title: data_zebra_encounter_risk_Wet

description: Zebra data used to assess the relative effect of diel migration and change in vegetation cover on decrease in encounter risk with lions during the wet season. id = individual ID ; daytrack = the daytrack ID ; median_distwater_day = the median distance to waterhole (in km) over all GPS locations at day in a given daytrack ; median_distwater_night = the median distance to waterhole (in km) over all GPS locations at night in a given daytrack ; daytime_risk = actual daytime risk (situation 1) ; nighttime_risk_no_adjustment = hypothetical nighttime risk in absence of behavioural adjustments (situation 3) ; nighttime_risk_dm = hypothetical nighttime risk with diel migration only (situation 4) ; nighttime_risk = actual nighttime risk (situation 2) ; DM = diel migration away from waterholes in km
DOI: 10.5061/dryad.c92k731/1
title: Number of arthropods collected in each plot and year.

description: Dataset with number of arthropods collected in each plot and year.
DOI: 10.5061/dryad.cb4m96b/1
title: Markers_for_publication

description: Marker data used in the study coded -1, 0 and 1 refering reference allele homozygote, heterozygote and alternative allele homozygote
DOI: 10.5061/dryad.cb4m96b/2
title: Pedigree_for_publication

description: Documented pedigree tracking relatedness from the base population of the New Zealand E. nitens breeding program
DOI: 10.5061/dryad.cb4m96b/3
title: Phenotypes_for_publication

description: Phenotypic data and design terms used in the mixed model
DOI: 10.5061/dryad.cb4m96b/4
title: Sib-ship_reconstruction_relationship_matrix

description: Relationship matrix constructed on the basis of information from sib-ship reconstruction analysis performed in our previous study (Klapste et al., 2017)
DOI: 10.5061/dryad.dt732vc/10
title: centrarchidae_MCMC_results

description: A R Statistical Environment data file in the 'RData' format. Contains the posterior distribution for 4 independent MCMC chains estimated for the Centrarchidae empirical example. See main text for more details. Also see files 'Caetano_Harmon_2018_Empirical_analyses.pdf' and 'Caetano_Harmon_2018_Empirical_analyses.Rmd' for more information.
DOI: 10.5061/dryad.dt732vc/11
title: Caetano_Harmon_2018_Empirical_analyses

description: Markdown pdf with the empirical analyses.
DOI: 10.5061/dryad.dt732vc/12
title: Caetano_Harmon_2018_Empirical_analyses

description: Markdown 'rmd' with the empirical analyses. Created using RStudio.
DOI: 10.5061/dryad.dt732vc/13
title: Caetano_Harmon_2018_Simulation_study

description: Markdown 'pdf' with the code and functions used to analyze the simulated datasets.
DOI: 10.5061/dryad.dt732vc/14
title: Caetano_Harmon_2018_Simulation_study

description: Markdown 'rmd' with the code and functions used to analyze the simulated datasets.
DOI: 10.5061/dryad.dt732vc/15
title: Caetano_Harmon_2018_pruning_example

description: Markdown 'pdf' with a detailed step-by-step commented code showing how to compute the new extension for the pruning algorithm applied to the case of multiple regimes of evolutionary rate matrices fitted to the tree.
DOI: 10.5061/dryad.dt732vc/16
title: Caetano_Harmon_2018_pruning_example

description: Markdown 'rmd' with a detailed step-by-step commented code showing how to compute the new extension for the pruning algorithm applied to the case of multiple regimes of evolutionary rate matrices fitted to the tree.
DOI: 10.5061/dryad.dt732vc/7
title: 500_species_6_traits

description: Simulated data for simulation study. Please check README file inside the zip file.
DOI: 10.5061/dryad.dt732vc/8
title: 1000_species_6_traits

description: Simulated data for simulation study. Please check README file inside the zip file.
DOI: 10.5061/dryad.dt732vc/9
title: anoles_MCMC_results

description: A R Statistical Environment data file in the 'RData' format. Contains the posterior distribution for 4 independent MCMC chains estimated for the Anolis clade. See main text for more details. Also see files 'Caetano_Harmon_2018_Empirical_analyses.pdf' and 'Caetano_Harmon_2018_Empirical_analyses.Rmd' for more information.
DOI: 10.5061/dryad.g0141g7/1
title: Phenotype and geographic data
DOI: 10.5061/dryad.g0141g7/2
title: Global SNP data

description: In vcf format, gzipped
DOI: 10.5061/dryad.g0141g7/3
title: West African SNP data

description: In vcf format, gzipped
DOI: 10.5061/dryad.g0141g7/5
title: Nigerian SNP data (filtered)

description: In vcf format, gzipped. Filter for minor allele frequency &gt; 0.03
DOI: 10.5061/dryad.g0f4hv0/9
title: GZO-38_merged.fastq

description: Second part of the merged forward and reverse reads for the Polar Urals core.
DOI: 10.5061/dryad.g3b5272/1
title: Figure 1

description: Values used in figure 1
DOI: 10.5061/dryad.g3b5272/2
title: Figure 2

description: Values used in figure 2
DOI: 10.5061/dryad.g3b5272/3
title: Figure 3

description: values used in figure 3
DOI: 10.5061/dryad.g3b5272/4
title: Figure 4

description: Values used in figure 4
DOI: 10.5061/dryad.g3b5272/5
title: Figure 5

description: Values used in figure 5
DOI: 10.5061/dryad.g3b5272/6
title: Figure 1-fig suppl 1

description: Values used in fig1 - fig supplement 1
DOI: 10.5061/dryad.g3b5272/7
title: Figure 1-fig suppl 3

description: Values used in Figure 1-fig suppl 3
DOI: 10.5061/dryad.g3b5272/8
title: Figure 2 - fig suppl 1

description: Values used in figure 2 - fig supplement 1
DOI: 10.5061/dryad.g3b5272/9
title: Figure 2 - fig suppl 2

description: Values used in figure 2 - fig supplement 2
DOI: 10.5061/dryad.h214h8t/1
title: DATA NG et al 2018

description: Represent a set of captured mating pairs from different littorinid species where the size and the sex has been recorded. The codification of the data is provided in the sme excel sheet than the data.
DOI: 10.5061/dryad.p7p1jb3/1
title: Wolak_et_al_SOSP_fitness_QG_Data

description: Data for **SEX-SPECIFIC ADDITIVE GENETIC VARIANCES AND CORRELATIONS FOR FITNESS IN A SONG SPARROW (MELOSPIZA MELODIA) POPULATION SUBJECT TO NATURAL IMMIGRATION AND INBREEDING**                                                                                                        by Wolak, Arcese, Keller, Nietlisbach, & Reid 
published in *Evolution*
These data come from the long-term song sparrow field study on Mandarte Island, BC, Canada.

The data provided here are sufficient to replicate the analyses presented in the above paper, and are therefore a restricted subset of the full Mandarte dataset.

If you are interested in running additional analyses that require further data then please get in touch with at least one (preferably all) of the following project leaders:
  - Prof Peter Arcese (University of British Columbia): peter.arceseubc.ca
  - Prof Lukas Keller (University of Zurich): lukas.kellerieu.uzh.ch
  - Prof Jane Reid (University of Aberdeen): jane.reidabdn.ac.uk

We are always happy to develop collaborations with researchers who have good ideas for new analyses.

We would also appreciate it if you could let us know if you are intending to make use of the dataset below in order to facilitate coordination of different ongoing research efforts and allow us to keep track of all outputs from the long-term field study.
DOI: 10.5061/dryad.p7p1jb3/2
title: Wolak_et_al_SOSP_fitness_QG_AnalysisCode

description: Code for **SEX-SPECIFIC ADDITIVE GENETIC VARIANCES AND CORRELATIONS FOR FITNESS IN A SONG SPARROW (MELOSPIZA MELODIA) POPULATION SUBJECT TO NATURAL IMMIGRATION AND INBREEDING** by Wolak, Arcese, Keller, Nietlisbach, & Reid published in *Evolution*

These data come from the long-term song sparrow field study on Mandarte Island, BC, Canada.

The data provided here are sufficient to replicate the analyses presented in the above paper, and are therefore a restricted subset of the full Mandarte dataset.

If you are interested in running additional analyses that require further data then please get in touch with at least one (preferably all) of the following project leaders:
  - Prof Peter Arcese (University of British Columbia): peter.arceseubc.ca
  - Prof Lukas Keller (University of Zurich): lukas.kellerieu.uzh.ch
  - Prof Jane Reid (University of Aberdeen): jane.reidabdn.ac.uk

We are always happy to develop collaborations with researchers who have good ideas for new analyses.

We would also appreciate it if you could let us know if you are intending to make use of the dataset below in order to facilitate coordination of different ongoing research efforts and allow us to keep track of all outputs from the long-term field study.
DOI: 10.5061/dryad.pf28st1/1
title: Raw_data
DOI: 10.5061/dryad.s3np654/1
title: Diversity and environmental properties in MLZ 15 ha plot

description: This file includes the coordinate of each subplot in different grain size, environmental properties (elevation, convexity,slope, pH, SOM, AP, TP, AN, TN) and community characteristics (basal area, rarefied richness, abundance).
DOI: 10.5061/dryad.sp12j6q/1
title: Vaziri_etal_2018_clean_data_ready_for_analysis

description: Please see README for variable descriptions
DOI: 10.5061/dryad.sp12j6q/10
title: Vaziri_etal_2018_density_AT-MT

description: Please see Vaziri_etal_2018_README_data_for_TEMPERATURE.txt
DOI: 10.5061/dryad.sp12j6q/2
title: Vaziri_etal_2018_raw_temp_activity_data

description: Please see README for variable descriptions
DOI: 10.5061/dryad.sp12j6q/3
title: Vaziri_etal_2018_cleaning_raw_temp_activity_data

description: R script that converts 'Vaziri_etal_2018_raw_temp_activity_data.csv' into 'Vaziri_etal_2018_clean_data_ready_for_analysis.csv'
DOI: 10.5061/dryad.sp12j6q/4
title: Vaziri_etal_2018_activity_gamms

description: R script that analyzes activity data using general additive mixed models (GAMMs) and produces the 'Vaziri_etal_2018_data_for_activity_figure.csv' file.
DOI: 10.5061/dryad.sp12j6q/5
title: Vaziri_etal_2018_data_for_activity_figure

description: Please see README for variable descriptions
DOI: 10.5061/dryad.sp12j6q/6
title: Vaziri_etal_2018_activity_fig

description: R script to produce activity figure.
DOI: 10.5061/dryad.sp12j6q/7
title: Vaziri_etal_2018_data_cleaning_for_fanova

description: Please see Vaziri_etal_2018_README_data_for_TEMPERATURE.txt for instructions on use of code, datafiles to be imported, and datafiles produced by code.
DOI: 10.5061/dryad.sp12j6q/8
title: Vaziri_etal_2018_density_AT-MC-MT

description: Please see Vaziri_etal_2018_README_data_for_TEMPERATURE.txt
DOI: 10.5061/dryad.sp12j6q/9
title: Vaziri_etal_2018_density_AT-MC

description: Please see Vaziri_etal_2018_README_data_for_TEMPERATURE.txt.
DOI: 10.5061/dryad.t4f4g85/1
title: README - Supplementary Archives 1 - 7

description: README of all Supplementary Archives 1-7
DOI: 10.5061/dryad.t4n42rr/1
title: Run1

description: Compressed file containing:
 1)	Forward sequence file
 2)	Reverse sequence file
 3)	File with experiment name, sample name and the tags, the forward primer and the reverse primer sequence associated.
DOI: 10.5061/dryad.t4n42rr/2
title: Run2

description: Compressed file containing:
 1)	Forward sequence file
 2)	Reverse sequence file
 3)	File with experiment name, sample name and the tags, the forward primer and the reverse primer sequence associated.
DOI: 10.5061/dryad.t4n42rr/3
title: Run3

description: Compressed file containing:
 1)	Forward sequence file
 2)	Reverse sequence file
 3)	File with experiment name, sample name and the tags, the forward primer and the reverse primer sequence associated.
DOI: 10.5061/dryad.t4n42rr/4
title: Run4

description: Compressed file containing:
 1)	Forward sequence file
 2)	Reverse sequence file
 3)	File with experiment name, sample name and the tags, the forward primer and the reverse primer sequence associated.
DOI: 10.5061/dryad.t4n42rr/5
title: Run8

description: Compressed file containing:
 1) Forward sequence file
 2) Reverse sequence file
 3) File with experiment name, sample name and the tags, the forward primer and the reverse primer sequence associated.
DOI: 10.5061/dryad.t4n42rr/6
title: Run11

description: Compressed file containing:
 1)	Forward sequence file
 2)	Reverse sequence file
 3)	File with experiment name, sample name and the tags, the forward primer and the reverse primer sequence associated.
DOI: 10.5061/dryad.t4n42rr/7
title: Run10

description: Compressed file containing:
 1)	Forward sequence file
 2)	Reverse sequence file
 3)	File with experiment name, sample name and the tags, the forward primer and the reverse primer sequence associated.
DOI: 10.5061/dryad.t4n42rr/8
title: Run6

description: Compressed file containing:
 1)	Forward sequence file
 2)	Reverse sequence file
 3)	File with experiment name, sample name and the tags, the forward primer and the reverse primer sequence associated.
DOI: 10.5061/dryad.t4n42rr/9
title: Run5_R1.fastq

description: Compressed file containing forward sequence file
DOI: 10.5061/dryad.vn730.1
title: Data from: Widespread paleopolyploidy, gene tree conflict, and recalcitrant relationships among the carnivorous Caryophyllales
DOI: 10.5061/dryad.vn730.1/1.1
title: Dryad Data

description: Material used in paper for analyses and making figures
DOI: 10.5061/dryad.vn730.2
title: Data from: Widespread paleopolyploidy, gene tree conflict, and recalcitrant relationships among the carnivorous Caryophyllales
DOI: 10.5061/dryad.vn730.2/1.2
title: Carnivory Data

description: Material used in paper for analyses and making figures
DOI: 10.5061/dryad.vq94085/1
title: SEM Digestive Wear Data

description: Data on microscopic digestive wear incurred by prey bones during the digestion process of predators
DOI: 10.5061/dryad.vr93sj5/1
title: Rydgren&al_rawdta
DOI: 10.5061/dryad.vr93sj5/2
title: Rydgren&al_OrdinationResults

description: The DCA (four axes) and GNMDS (3-dimensional solution) ordination results of the species compositional data from the 1031 plots. These data were collected in 80 permanently marked plots (8 plots in each of 10 blocks) in a boreal forest in SE Norway over the years 1993-2003, 2005, and 2011.Nine plots were devoid of species in 1994, The plots were experimentally disturbed before after 1993. The treatments were: T1 (removal of vegetation), T2 (removal of vegetation and the litter layer), T3 (removal of vegetation, the litter, and the mor soil layers), T4 and T5 (removal of vegetation, organic, and bleached soil layers; with T4 bordering intact vegetation on two sides, whereas T5 had a minimum distance of 0.5 m to intact vegetation). Three of the plots in each block served as controls (C).
DOI: 10.5061/dryad.vr93sj5/3
title: Rydgren&al_AppendixS1_Rcode Fig1
DOI: 10.5061/dryad.vr93sj5/4
title: Rydgren&al_dtafig1a

description: Data belonging to the R-script named: Rydgren&al_AppendixS1_Rcode Fig1.R
DOI: 10.17632/jf8jjp626s.1
title: Data for: Waste Generated During Glaucoma Surgery: A Comparison of Two Global Facilities

description: Glaucoma surgical waste data for manuscript.