cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10531878
title: Multiple Introductions of Mpox virus to Ireland during the 2022-2023 International Outbreak

description: Supplementary datasets for the study titled: 'Multiple Introductions of Mpox virus to Ireland during the 2022-2023 International Outbreak'

The datasets presented here are the list of publicly available sequences from other geographical locations used as reference for analysis of Irish mpox sequences (Supplementary Table 1), the list of sequenced mpox viruses (MPXV) in the Republic of Ireland during the outbreak 2022-2023 (Supplementary Table 2) and the list of MPXV genes with mutations in our dataset of Irish sequences (Supplementary Table 4).

Description of the data and file structure

The files in this dataset were formatted in Microsoft Excel 2019 to allow easy access and manipulation of the data. The data corresponds to details on the sequences used in the analysis of the MPXV from the 2022-2023 international outbreak encompassing data between May 2022 and November of 2023. The contents of the files are described below:



Supplementary Table 1: This file contains the source (database as GenBank or GISAID) of the data, the accession number to allow its downloading, the mpox clade assigned by Nextclade (https://clades.nextstrain.org/), reported collection date of the sample, reported country of origin and the geographical region assigned.

Supplementary Table 2: This file contains details on the sequences generated in our study with the GenBank accession number, the GISAID accession number, reported collection date, Nextclade assigned taxonomical clade and the percentage of the genome covered by the sequence. 

(Supplementary Table 3): This table was omitted as it is small and summarizes the counts of mutations.

Supplementary Table 4: This file contains a distribution of mutated positions over the annotated MPXV genome relative to the reference Gene ID as provided in the annotation for NC_063383.1, with gene affected, start and end of the gene (relative to the reference genome GenBank:NC_063383.1), number of non-coding, non-synonymous and synonymous mutations in each gene, and the total of mutations per gene.


Sharing/Access information

The databases used to extract and deposit the data were:



GenBank: the North American repository of sequences and publicly available at: https://www.ncbi.nlm.nih.gov/genbank/

GISAID: International consortium of sequences with some metadata and clinical data. It is a semi-public repository with easy access requiring only to create an account. Available at: https://gisaid.org/
DOI: 10.5281/zenodo.8323327
title: Multiple Introductions of Mpox virus to Ireland during the 2022-2023 International Outbreak

description: Supplementary datasets for the study titled: 'Multiple Introductions of Mpox virus to Ireland during the 2022-2023 International Outbreak'

The datasets presented here are the list of publicly available sequences from other geographical locations used as reference for analysis of Irish mpox sequences (Supplementary Table 1), the list of sequenced mpox viruses (MPXV) in the Republic of Ireland during the outbreak 2022-2023 (Supplementary Table 2) and the list of MPXV genes with mutations in our dataset of Irish sequences (Supplementary Table 4).

Description of the data and file structure

The files in this dataset were formatted in Microsoft Excel 2019 to allow easy access and manipulation of the data. The data corresponds to details on the sequences used in the analysis of the MPXV from the 2022-2023 international outbreak encompassing data between May 2022 and November of 2023. The contents of the files are described below:



Supplementary Table 1: This file contains the source (database as GenBank or GISAID) of the data, the accession number to allow its downloading, the mpox clade assigned by Nextclade (https://clades.nextstrain.org/), reported collection date of the sample, reported country of origin and the geographical region assigned.

Supplementary Table 2: This file contains details on the sequences generated in our study with the GenBank accession number, the GISAID accession number, reported collection date, Nextclade assigned taxonomical clade and the percentage of the genome covered by the sequence. 

(Supplementary Table 3): This table was omitted as it is small and summarizes the counts of mutations.

Supplementary Table 4: This file contains a distribution of mutated positions over the annotated MPXV genome relative to the reference Gene ID as provided in the annotation for NC_063383.1, with gene affected, start and end of the gene (relative to the reference genome GenBank:NC_063383.1), number of non-coding, non-synonymous and synonymous mutations in each gene, and the total of mutations per gene.


Sharing/Access information

The databases used to extract and deposit the data were:



GenBank: the North American repository of sequences and publicly available at: https://www.ncbi.nlm.nih.gov/genbank/

GISAID: International consortium of sequences with some metadata and clinical data. It is a semi-public repository with easy access requiring only to create an account. Available at: https://gisaid.org/
DOI: 10.5281/zenodo.8323328
title: Multiple Introductions of Mpox virus to Ireland during the 2022 International Outbreak

description: Supplementary datasets for the study titled: '<strong>Multiple Introductions of Mpox virus to Ireland during the 2022 International Outbreak</strong>' The datasets presented here are the list of publicly available sequences from other locations used as reference for analysis of our sequences (Supplementary Table 1), the list of sequenced mpox viruses (MPXV) in the Republic of Ireland (Supplementary Table 2) and the list of MPXV genes with mutations in our dataset of Irish sequences (Supplementary Table 4). <strong>Description of the data and file structure</strong> The files in this dataset were formatted in Microsoft Excel 2019 to allow easy access and manipulation of the data. The data corresponds to details on the sequences used in the analysis of the MPXV from the 2022 international outbreak encompassing data between May and November of 2022. The contents of the files are described below: -<strong>Supplementary Table 1</strong>: This file contains the source (database as GenBank or GISAID) of the data, the accession number to allow its downloading, the assigned mpox clade, reported collection date of the sample, reported country of origin and the geographical region assigned. -<strong>Supplementary Table 2</strong>: This file contains details on the sequences generated in our study with the GenBank accession number, the GISAID accession number, reported collection date, GISAID assigned taxonomical clade and the percentage of the genome covered by the sequence. -<em>(Supplementary Table 3)</em>: This table was omitted as it is small and summarizes the counts of mutations. -<strong>Supplementary Table 4</strong>: This file contains a distribution of mutated positions over the annotated MPXV genome relative to the reference ON676708, with gene affected, start and end of the gene (relative to the reference genome GenBank:ON676708), number of non-coding, non-synonymous and synonymous mutations in each gene, and the total of mutations per gene. <strong>Sharing/Access information</strong> The databases used to extract and deposit the data were: -GenBank: the North American repository of sequences and publicly available at: <strong>https://www.ncbi.nlm.nih.gov/genbank/</strong> -GISAID: International consortium of sequences with some metadata and clinical data. It is a semi-public repository with easy access requiring only to create an account. Available at: <strong>https://gisaid.org/</strong>
DOI: 10.6084/m9.figshare.25027118
title: Data for BC and BrC

description: spatial distribution of the BC and BrC in the TP
DOI: 10.6084/m9.figshare.25027118.v1
title: Data for BC and BrC

description: spatial distribution of the BC and BrC in the TP
DOI: 10.6084/m9.figshare.25021571
title: Effects of combining small-sided games with resisted sprint training.

description: The aim of our study was to compare the effects of combining small-sided games training with resisted sprint training in relation to regular soccer training on soccer players’ physical performance.
DOI: 10.6084/m9.figshare.25021571.v1
title: Effects of combining small-sided games with resisted sprint training.

description: The aim of our study was to compare the effects of combining small-sided games training with resisted sprint training in relation to regular soccer training on soccer players’ physical performance.
DOI: 10.6084/m9.figshare.25021571.v2
title: Effects of combining small-sided games with resisted sprint training.

description: The aim of our study was to compare the effects of combining small-sided games training with resisted sprint training in relation to regular soccer training on soccer players’ physical performance.
DOI: 10.17617/4.ef
title: Dipeptide coacervates as artificial membraneless organelles for bioorthogonal catalysis

description: Cao, S., Ivanov, T., Heuer, J., Ferguson, C. T. J., Landfester, K., & Caire da Silva, L. (2024). Dipeptide coacervates as artificial membraneless organelles for bioorthogonal catalysis. Nature Communications, 15: 39. doi:10.1038/s41467-023-44278-9.
DOI: 10.34740/kaggle/dsv/7433413
title: Egypt Gold Prices | Daily Updated
DOI: 10.5281/zenodo.10531198
title: Nucleus-Translocated GCLM Promotes Chemoresistance in Colorectal Cancer through a Moonlighting Function

description: The sequencing raw data related to the CRISPR‒Cas9 screen results.
DOI: 10.5281/zenodo.10531199
title: Nucleus-Translocated GCLM Promotes Chemoresistance in Colorectal Cancer through a Moonlighting Function

description: The sequencing raw data related to the CRISPR‒Cas9 screen results.
DOI: 10.5281/zenodo.10524245
title: Replication Package for "An Extensive Comparison of Static Application Security Testing Tools"

description: This is the replication package for the paper titled "An Extensive Comparison of Static Application Security Testing Tools". The replication package includes the necessary resources and instructions to reproduce the findings and figures presented in the paper.

 

Changelog (dd/mm/yyyy)

 Ver. 1.0 - 18/01/2023 

    Initial Upload
DOI: 10.5281/zenodo.10524246
title: Replication Package for "An Extensive Comparison of Static Application Security Testing Tools"

description: This is the replication package for the paper titled "An Extensive Comparison of Static Application Security Testing Tools". The replication package includes the necessary resources and instructions to reproduce the findings and figures presented in the paper.

 

Changelog (dd/mm/yyyy)

 Ver. 1.0 - 18/01/2023 

    Initial Upload
DOI: 10.5517/ccdc.csd.cc2gtmzx
title: CCDC 2288760: Experimental Crystal Structure Determination

description: Related Article: Mikhail A. Kalinin, Mariia V. Evsiunina, Paulina Kalle, Konstantin A. Lyssenko, Petr I. Matveev, Nataliya E. Borisova|2023|Inorg.Chem.|63|602|doi:10.1021/acs.inorgchem.3c03488
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gtn0z
title: CCDC 2288761: Experimental Crystal Structure Determination

description: Related Article: Mikhail A. Kalinin, Mariia V. Evsiunina, Paulina Kalle, Konstantin A. Lyssenko, Petr I. Matveev, Nataliya E. Borisova|2023|Inorg.Chem.|63|602|doi:10.1021/acs.inorgchem.3c03488
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gtn10
title: CCDC 2288762: Experimental Crystal Structure Determination

description: Related Article: Mikhail A. Kalinin, Mariia V. Evsiunina, Paulina Kalle, Konstantin A. Lyssenko, Petr I. Matveev, Nataliya E. Borisova|2023|Inorg.Chem.|63|602|doi:10.1021/acs.inorgchem.3c03488
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h310p
title: CCDC 2296821: Experimental Crystal Structure Determination

description: Related Article: Xinlei Huang, Fuqiang Chen, Haoran Sun, Liu Yang, Qiwei Yang, Zhiguo Zhang, Yiwen Yang, Qilong Ren, Zongbi Bao|2023|J.Am.Chem.Soc.|146|617|doi:10.1021/jacs.3c10495
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10531365
title: Moscow City UFSIN News Crawl Pt.1

description: WARC files produced by a webcrawl of Moscow City UFSIN news online resource. WARC reader is necessary to view files.
DOI: 10.5281/zenodo.10531366
title: Moscow City UFSIN News Crawl Pt.1

description: WARC files produced by a webcrawl of Moscow City UFSIN news online resource. WARC reader is necessary to view files.
DOI: 10.5517/ccdc.csd.cc2f2bpk
title: CCDC 2236578: Experimental Crystal Structure Determination

description: Related Article: Eduardo L. Gutiérrez, Agustín A. Godoy, Elena V. Brusau, Daniel Vega, Griselda E. Narda, Sebastián Suárez, Florencia Di Salvo|2024|RSC Advances|14|181|doi:10.1039/D3RA07422F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/7433426
title: Health Workforce Shortage Areas
DOI: 10.34740/kaggle/dsv/7433441
title: OnlineFree
DOI: 10.34740/kaggle/dsv/7433440
title: AutoXGB
DOI: 10.5281/zenodo.10531914
title: XRD and ARPES data associated with manuscript S. Reimers et al.,  Direct observation of altermagnetic band splitting in CrSb thin films
DOI: 10.5281/zenodo.10531915
title: XRD and ARPES data associated with manuscript S. Reimers et al.,  Direct observation of altermagnetic band splitting in CrSb thin films
DOI: 10.5281/zenodo.10473816
title: Relating forest structural characteristics to bat and bird diversity in the Italian Alps - Supporting Data

description: Dataset including the calculated indices for bats and birds in the 40 forests sites used in the associated journal article. The dataset also includes the calculated variables of forest structure characteristics used for statistical modelling. Legend for indices and variables is given in the file readme_legend.txt

If interested in using the dataset for a research study or a project, please contact Marco Mina or Chiara Paniccia

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Rigo F, Paniccia C, Anderle M, Chianucci F, Obojes N, Tappeiner U, Hilpold A, Mina M. 2024. Relating forest structural characteristics to bat and bird diversity in the Italian Alps. Forest Ecology and Management. 554:121673 https://doi.org/10.1016/j.foreco.2023.121673

ABSTRACT. The global decline of biodiversity has affected European forests, involving many tree species and forest-dwelling threatened animals. An integrated approach linking forest structure and multi-taxon diversity is increasingly needed to maintain the multifunctionality of forest ecosystems. We investigated the relationship between forest structure, deadwood elements, canopy attributes, and tree-related microhabitats on bat and bird communities in the north-eastern Italian Alps. We collected forest attributes, bats, and bird data on 40 forest plots encompassing the diversity of forest types. To assess the different contributions of each forest attribute variables we performed a two-step statistical analysis using generalised and linear models, including bat and bird taxonomical and functional diversity indices as response variables. Our findings reveal that bats and birds respond differently to variation in forest structural characteristics. Specifically, bat species richness was higher in forests with both higher standing tree and lying deadwood volume. The Shannon diversity index for bird community was higher in forests with high volumes of coarse lying deadwood and stumps. Moreover, plots with mature trees, gaps, and heterogeneous diameter distribution fostered the presence of generalist species of bats and birds, while the abundance of tree-related microhabitats was not significant for these two taxa. This study demonstrates that the optimal habitat conditions for bats and birds in Alpine forests are multifaceted. Promoting distinctive elements within forest stands and a complex forest structure through adaptations in forest management interventions would enhance the conservation of multi-taxon forest biodiversity.
DOI: 10.5281/zenodo.10473817
title: Relating forest structural characteristics to bat and bird diversity in the Italian Alps - Supporting Data

description: Dataset including the calculated indices for bats and birds in the 40 forests sites used in the associated journal article. The dataset also includes the calculated variables of forest structure characteristics used for statistical modelling. Legend for indices and variables is given in the file readme_legend.txt

If interested in using the dataset for a research study or a project, please contact Marco Mina or Chiara Paniccia

---------------------------------------------------------------------------------------------------------------------------------

Rigo F, Paniccia C, Anderle M, Chianucci F, Obojes N, Tappeiner U, Hilpold A, Mina M. 2024. Relating forest structural characteristics to bat and bird diversity in the Italian Alps. Forest Ecology and Management. 554:121673 https://doi.org/10.1016/j.foreco.2023.121673

ABSTRACT. The global decline of biodiversity has affected European forests, involving many tree species and forest-dwelling threatened animals. An integrated approach linking forest structure and multi-taxon diversity is increasingly needed to maintain the multifunctionality of forest ecosystems. We investigated the relationship between forest structure, deadwood elements, canopy attributes, and tree-related microhabitats on bat and bird communities in the north-eastern Italian Alps. We collected forest attributes, bats, and bird data on 40 forest plots encompassing the diversity of forest types. To assess the different contributions of each forest attribute variables we performed a two-step statistical analysis using generalised and linear models, including bat and bird taxonomical and functional diversity indices as response variables. Our findings reveal that bats and birds respond differently to variation in forest structural characteristics. Specifically, bat species richness was higher in forests with both higher standing tree and lying deadwood volume. The Shannon diversity index for bird community was higher in forests with high volumes of coarse lying deadwood and stumps. Moreover, plots with mature trees, gaps, and heterogeneous diameter distribution fostered the presence of generalist species of bats and birds, while the abundance of tree-related microhabitats was not significant for these two taxa. This study demonstrates that the optimal habitat conditions for bats and birds in Alpine forests are multifaceted. Promoting distinctive elements within forest stands and a complex forest structure through adaptations in forest management interventions would enhance the conservation of multi-taxon forest biodiversity.
DOI: 10.5281/zenodo.10371354
title: Effect of shade and nitrogen content on Arabidopsis Col-0 and cytokinin mutants abcg14 and cypDM mRNA-seq gene expression processed tables.

description: This dataset is an add-on for Gautrat et al., containing processed files for the mRNAseq data in tab delimited txt format.

Here, you can obtain the raw counts file, the normalized CPM values, and the normalized logCPM values

The RNA-seq raw data supporting the conclusions of this article have been deposited in ArrayExpress (Kolesnikov et al., 2015) at EMBL-EBI (www.ebi.ac.uk/arrayexpress), under accession numbers E-MTAB-13638.

All relevant custom r scripts are available at https://github.com/aromanowski/shade_N_ck
DOI: 10.5281/zenodo.10371355
title: Effect of shade and nitrogen content on Arabidopsis Col-0 and cytokinin mutants abcg14 and cypDM mRNA-seq gene expression processed tables.

description: This dataset is an add-on for Gautrat et al., containing processed files for the mRNAseq data in tab delimited txt format.

Here, you can obtain the raw counts file, the normalized CPM values, and the normalized logCPM values

The RNA-seq raw data supporting the conclusions of this article have been deposited in ArrayExpress (Kolesnikov et al., 2015) at EMBL-EBI (www.ebi.ac.uk/arrayexpress), under accession numbers E-MTAB-13638.

All relevant custom r scripts are available at https://github.com/aromanowski/shade_N_ck
DOI: 10.34808/sqff-pm19
title: Enhancement of self-trapped excitons and near-infrared emission in Bi3+/Er3+ co-doped Cs2Ag0.4Na0.6InCl6 double perovskite

description: Erbium (Er) complexes are used as optical gain materials for signal generation in the telecom C-band at 1540 nm, but they need a sensitizer to enhance absorption. Na+ substitution for Ag+ and Bi3+ doping at the In3+ site is a possible strategy to enhance the broadband emission of Cs2AgInCl6, which could be used as a sensitizer for energy transfer to rare-earth elements. Herein, self-trapped exciton (STE) energy transfer to Er3+ at 1540 nm in double perovskite is reported.  Bare Cs2AgInCl6:Er emission signals were found to be weak at 1540 nm, but Bi3+ doping increased them by 12 times, and Bi3+ and Na+ doping increased signal intensity by up to 25 times. Moreover, an increase in pressure compressed the structure, which tuned the STE transition for free exciton emission, and a further increase in pressure distorted the cubic phase above 70 kbar.
The dataset includes raw information encompassing room temperature excitation, emission, photocurrent, and Raman spectra, and decay kinetics. It also contains data on temperature-dependent excitation and emission spectra, as well as decay kinetics. Additionally, the dataset covers high-pressure dependent excitation, emission, Raman spectra, and decay profiles.
DOI: 10.34808/qkgb-kz66
title: Complex modulus of Cement Bitumen Treated Material Mixture C3E4 laboratory mixed/laboratory compacted (7-365 days of curing at 20C)

description: Dataset presents data of complex modulus determined for cold recycled mixture – cement bitumen treated material mixture with following binding agents: 3% cement, 4% emulsion (C3E4). Mixture was designed according to Polish requirements for the base course of pavement. Mixture was mixed in laboratory conditions on the basis of materials obtained from the contractor and later compacted in laboratory. Mixture contains 70% of RAP material. Specimen size: f=100 mm, h=150mm. 
Data was obtained on the Simple Performance Tester (IPC global) for 1 temperatures (+20°C) and 7 curing times (7, 14, 28, 42, 90, 180 and 365 days). Gauge length was 70 mm.
Test load was selected as haversine compression with varied target strain range – from 10-20µstrain up to 200-210µstrain.