cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15151/esrf-es-1413549999
title: Austrian Crystallographic Diffraction Consortium

description: The Austrian Crystallographic Diffraction Consortium (ACDC) BAG aims at supporting several macromolecular structural biology groups across Austria (in total 20 research groups at 9 institutions in 4 cities). We employ mainly the technique of X-ray crystallography to characterize macromolecular biological complexes, but also solution scattering approaches are frequently used to characterize dynamic assemblies. Approval of this BAG will be essential for researchers in all our groups to carry out their structural studies on various health-related and basic research-oriented topics, which are targeted at characterizing large molecular assemblies or proteins currently under-represented in the PDB, including membrane proteins. Corresponding high-resolution diffraction data are only obtainable through the use of synchrotron radiation sources. Thus regular synchrotron access is highly desirable to maintain a competitive advantage in our individual research fields.
DOI: 10.25582/data.2023-01.2721489/2292852
title: Data for EMSL Project 60066 from January 2023
DOI: 10.15151/esrf-es-1435811675
title: BAG for the Structural Biology Groups in Madrid

description: This proposal is a collaborative effort of the Structural Biology Groups of Madrid with the objective to form a strong core of scientist devoted to this area of research in Spain. It is composed of 21 groups distributed in 4 research Institutes.
DOI: 10.25402/bmm.14785209
title: Supplementary Table 5 The potential target mRNAs of identified differentially expressed lncRNAs

description: Aim: To explore the
 expression profiles of lncRNAs and identify novel lncRNAs as biomarkers for
 early diagnosis and therapy of hepatocellular carcinoma (HCC). Materials
 & methods: Expression profiles of lncRNAs and mRNAs in five paired HCC
 and adjacent normal tissues were obtained by RNA-seq. Eight lncRNAs,
 including two novel liver-specific lncRNAs (NONHSAT059247.2 and
 NONHSAT013897.2), were validated in another 74 pairs of HCC and adjacent
 normal tissues by qRT-PCR. Results: The results of qRT-PCR showed that
 NONHSAT252133.1, NONHSAT112116.2, and NONHSAT242657.1 were significantly
 upregulated in HCC tissues, whereas NONHSAT169790.1, NONHSAT059247.2, and
 NONHSAT013897.2 were significantly downregulated. Two liver-specific lncRNAs
 demonstrated excellent diagnostic performance: NONHSAT059247.2 (AUC=0.941,
 95% CI: 0.902-0.979, P&lt;0.0001), NONHSAT013897.2 (AUC=0.944, 95% CI:
 0.906-0.983, P&lt;0.0001).
 
 




Conclusion: The liver-specific lncRNAs
NONHSAT059247.2 and NONHSAT013897.2, may provide new biomarkers for the future
study on diagnosis, therapy, and mechanisms of HCC.
DOI: 10.25582/data.2023-01.2721628/2292853
title: Data for EMSL Project 60066 from January 2023
DOI: 10.15151/esrf-es-1504415639
title: scanning XRF analysis of scorpion stingers

description: scanning XRF analysis of scorpion stingers
DOI: 10.25402/bmm.14785212
title: Supplementary Table 2 Differentially expressed lncRNAs identified by RNA-seq

description: Aim: To explore the
 expression profiles of lncRNAs and identify novel lncRNAs as biomarkers for
 early diagnosis and therapy of hepatocellular carcinoma (HCC). Materials
 & methods: Expression profiles of lncRNAs and mRNAs in five paired HCC
 and adjacent normal tissues were obtained by RNA-seq. Eight lncRNAs,
 including two novel liver-specific lncRNAs (NONHSAT059247.2 and
 NONHSAT013897.2), were validated in another 74 pairs of HCC and adjacent
 normal tissues by qRT-PCR. Results: The results of qRT-PCR showed that
 NONHSAT252133.1, NONHSAT112116.2, and NONHSAT242657.1 were significantly
 upregulated in HCC tissues, whereas NONHSAT169790.1, NONHSAT059247.2, and
 NONHSAT013897.2 were significantly downregulated. Two liver-specific lncRNAs
 demonstrated excellent diagnostic performance: NONHSAT059247.2 (AUC=0.941,
 95% CI: 0.902-0.979, P&lt;0.0001), NONHSAT013897.2 (AUC=0.944, 95% CI:
 0.906-0.983, P&lt;0.0001).
 
 




Conclusion: The liver-specific lncRNAs
NONHSAT059247.2 and NONHSAT013897.2, may provide new biomarkers for the future
study on diagnosis, therapy, and mechanisms of HCC.
DOI: 10.25582/data.2023-01.2721523/2292854
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721285/2292855
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25402/bmm.14785215
title: Supplementary Table 4 The candidate differentially expressed lncRNAs for qRT-PCR

description: Aim: To explore the
 expression profiles of lncRNAs and identify novel lncRNAs as biomarkers for
 early diagnosis and therapy of hepatocellular carcinoma (HCC). Materials
 & methods: Expression profiles of lncRNAs and mRNAs in five paired HCC
 and adjacent normal tissues were obtained by RNA-seq. Eight lncRNAs,
 including two novel liver-specific lncRNAs (NONHSAT059247.2 and
 NONHSAT013897.2), were validated in another 74 pairs of HCC and adjacent
 normal tissues by qRT-PCR. Results: The results of qRT-PCR showed that
 NONHSAT252133.1, NONHSAT112116.2, and NONHSAT242657.1 were significantly
 upregulated in HCC tissues, whereas NONHSAT169790.1, NONHSAT059247.2, and
 NONHSAT013897.2 were significantly downregulated. Two liver-specific lncRNAs
 demonstrated excellent diagnostic performance: NONHSAT059247.2 (AUC=0.941,
 95% CI: 0.902-0.979, P&lt;0.0001), NONHSAT013897.2 (AUC=0.944, 95% CI:
 0.906-0.983, P&lt;0.0001).
 
 




Conclusion: The liver-specific lncRNAs
NONHSAT059247.2 and NONHSAT013897.2, may provide new biomarkers for the future
study on diagnosis, therapy, and mechanisms of HCC.
DOI: 10.25582/data.2023-01.2721290/2292856
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721630/2292857
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721646/2292858
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721553/2292859
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721502/2292860
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721432/2292861
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721430/2292862
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721120/2292863
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721154/2292864
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721286/2292865
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721337/2292866
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721309/2292867
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721312/2292868
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721280/2292869
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721640/2292870
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721653/2292871
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721340/2292872
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721378/2292873
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721062/2292874
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721094/2292875
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721464/2292876
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721486/2292877
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721130/2292878
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721487/2292879
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721419/2292880
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721298/2292881
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721254/2292882
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721049/2292883
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721084/2292884
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721546/2292885
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721311/2292886
title: Data for EMSL Project 60066 from January 2023
DOI: 10.6084/m9.figshare.14782926.v1
title: Additional file 4 of Ovary-derived circular RNAs profile analysis during the onset of puberty in gilts

description: Additional file 4. List of the circRNAs in pubertal genes.
DOI: 10.6084/m9.figshare.14782938.v1
title: Additional file 8 of Ovary-derived circular RNAs profile analysis during the onset of puberty in gilts

description: Additional file 8. List of the tissue-specific circRNAs.
DOI: 10.25582/data.2023-01.2721348/2292887
title: Data for EMSL Project 60066 from January 2023
DOI: 10.6084/m9.figshare.14782911
title: Additional file 11 of Ovary-derived circular RNAs profile analysis during the onset of puberty in gilts

description: Additional file 11. List of primers used for validation.
DOI: 10.6084/m9.figshare.14782929
title: Additional file 5 of Ovary-derived circular RNAs profile analysis during the onset of puberty in gilts

description: Additional file 5. List of the alternative splicing in circRNAs.
DOI: 10.6084/m9.figshare.14782911.v1
title: Additional file 11 of Ovary-derived circular RNAs profile analysis during the onset of puberty in gilts

description: Additional file 11. List of primers used for validation.
DOI: 10.6084/m9.figshare.16880138.v1
title: Additional file 5 of CircRNF220, not its linear cognate gene RNF220, regulates cell growth and is associated with relapse in pediatric acute myeloid leukemia

description: Additional file 5: Supplementary Table S1. Detailed characteristics of pediatric patients with AML (n=149).
DOI: 10.6084/m9.figshare.16880152.v1
title: Additional file 6 of FABP4 is an independent risk factor for lymph node metastasis and poor prognosis in patients with cervical cancer

description: Additional file 6. The results of GESA in TCGA cohort.
DOI: 10.6084/m9.figshare.22647337.v1
title: A General Modeling Framework for Network Autoregressive Processes

description: A general flexible framework for Network Autoregressive Processes (NAR) is developed, wherein the response of each node in the network linearly depends on its past values, a prespecified linear combination of neighboring nodes and a set of node-specific covariates. The corresponding coefficients are node-specific, and the framework can accommodate heavier than Gaussian errors with spatial-autoregressive, factor-based, or in certain settings general covariance structures. We provide a sufficient condition that ensures the stability (stationarity) of the underlying NAR that is significantly weaker than its counterparts in previous work in the literature. Further, we develop ordinary and (estimated) generalized least squares estimators for both fixed, as well as diverging numbers of network nodes, and also provide their ridge regularized counterparts that exhibit better performance in large network settings, together with their asymptotic distributions. We derive their asymptotic distributions that can be used for testing various hypotheses of interest to practitioners. We also address the issue of misspecifying the network connectivity and its impact on the aforementioned asymptotic distributions of the various NAR parameter estimators. The framework is illustrated on both synthetic and real air pollution data.
DOI: 10.6084/m9.figshare.14782920
title: Additional file 2 of Ovary-derived circular RNAs profile analysis during the onset of puberty in gilts

description: Additional file 2. List of the KEGG pathways enriched using parental genes of all CircRNAs.
DOI: 10.6084/m9.figshare.14782932
title: Additional file 6 of Ovary-derived circular RNAs profile analysis during the onset of puberty in gilts

description: Additional file 6. List of the KEGG pathways enriched using parental genes of stage-specific CircRNAs.
DOI: 10.25582/data.2023-01.2721382/2292888
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721644/2292889
title: Data for EMSL Project 60066 from January 2023
DOI: 10.6084/m9.figshare.14782935
title: Additional file 7 of Ovary-derived circular RNAs profile analysis during the onset of puberty in gilts

description: Additional file 7. List of the parental genes that are capable of producing stage-specific and non-specific circRNAs.
DOI: 10.6084/m9.figshare.14782938
title: Additional file 8 of Ovary-derived circular RNAs profile analysis during the onset of puberty in gilts

description: Additional file 8. List of the tissue-specific circRNAs.
DOI: 10.6084/m9.figshare.14782917
title: Additional file 1 of Ovary-derived circular RNAs profile analysis during the onset of puberty in gilts

description: Additional file 1. List of the information of all identified circRNAs.
DOI: 10.6084/m9.figshare.16880137.v1
title: Additional file 1 of FABP4 is an independent risk factor for lymph node metastasis and poor prognosis in patients with cervical cancer

description: Additional file 1. The results of GO enrichment analysis of 243 LNM-associated genes.
DOI: 10.25582/data.2023-01.2721249/2292890
title: Data for EMSL Project 60066 from January 2023
DOI: 10.6084/m9.figshare.14782923
title: Additional file 3 of Ovary-derived circular RNAs profile analysis during the onset of puberty in gilts

description: Additional file 3. List of the key pathways related to the timing of puberty in parental genes of circRNAs.
DOI: 10.6084/m9.figshare.14782941
title: Additional file 9 of Ovary-derived circular RNAs profile analysis during the onset of puberty in gilts

description: Additional file 9. List of the differentially regulated circRNAs.
DOI: 10.25582/data.2023-01.2721364/2292891
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721457/2292892
title: Data for EMSL Project 60066 from January 2023
DOI: 10.6084/m9.figshare.16880165.v1
title: Additional file 3 of A Markov random field model for network-based differential expression analysis of single-cell RNA-seq data

description: Additional file 3. A complete list of differentially expressed genes inferred by the t-test, Wilcoxon test, MAST,and their corresponding MRF models.
DOI: 10.15468/dl.waqm6h
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Albraunia fugax (Boiss. & Noë) Speta"
 ]
}

 The dataset includes 16 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025011-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3f53bg
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Kerivoula picta (Pallas, 1767)"
 ]
}

 The dataset includes 176 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0294117-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.txewjm
title: Occurrence Download

description: A dataset listing the 57633 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "OccurrenceStatus is Present",
 "TaxonKey is Arthropoda"
 ]
}

 The dataset's 57633 records were derived from 1484 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062726-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k9xtmp
title: Occurrence Download

description: A dataset listing the 24333 species recorded in GBIF matching the query:
{
 "GadmGid" : [
 "is BRA.19_1"
 ]
}

 The dataset's 24333 records were derived from 647 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0318553-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc21mwvf
title: CCDC 1895955: Experimental Crystal Structure Determination

description: Related Article: Višnja Vrdoljak, Mirna Mandaric, Tomica Hrenar, Ivica Ðilovic, Jana Pisk, Gordana Pavlovic, Marina Cindric, Dominique Agustin|2019|Cryst.Growth Des.|19|3000|doi:10.1021/acs.cgd.9b00231
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21mwwg
title: CCDC 1895956: Experimental Crystal Structure Determination

description: Related Article: Višnja Vrdoljak, Mirna Mandaric, Tomica Hrenar, Ivica Ðilovic, Jana Pisk, Gordana Pavlovic, Marina Cindric, Dominique Agustin|2019|Cryst.Growth Des.|19|3000|doi:10.1021/acs.cgd.9b00231
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21mwxh
title: CCDC 1895957: Experimental Crystal Structure Determination

description: Related Article: Višnja Vrdoljak, Mirna Mandaric, Tomica Hrenar, Ivica Ðilovic, Jana Pisk, Gordana Pavlovic, Marina Cindric, Dominique Agustin|2019|Cryst.Growth Des.|19|3000|doi:10.1021/acs.cgd.9b00231
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21mwyj
title: CCDC 1895958: Experimental Crystal Structure Determination

description: Related Article: Višnja Vrdoljak, Mirna Mandaric, Tomica Hrenar, Ivica Ðilovic, Jana Pisk, Gordana Pavlovic, Marina Cindric, Dominique Agustin|2019|Cryst.Growth Des.|19|3000|doi:10.1021/acs.cgd.9b00231
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6073/pasta/2776b5bd019ad3e119ed41b7d66e4746
title: Phospholipid Fatty Acid Profiles of Bacteria and Fungi in Peat Exposed to Experimentally Increased N Deposition, 2015

description: Development of the oil sands has led to increasing atmospheric N
  deposition, with values as high as 17 kg N
  ha-1 yr-1;
  regional background levels &lt;2 kg N ha-1
  yr-1. Bogs, being ombrotrophic, may be
  especially susceptible to increasing N deposition. To examine
  responses to N deposition, over five years, we experimentally applied
  N (as NH4NO3) to a bog
  near Mariana Lakes, Alberta, at rates of 0, 5, 10, 15, 20, and 25 kg N
  ha-1 yr-1, plus
  controls (no water or N addition). In July of 2015 we measured PLFA
  markers in two depths in each plot. For the most part, microbial group
  abundances were not affected by increasing N input (Fig. 16). However,
  actinomycete abundance decreased with increasing N deposition at rates
  that were similar in 0-5 and 5-10 cm peat. Gram-negative bacteria
  increased slightly with increasing N input and were more abundant in
  0-5 cm than in 5-10 cm peat; correspondingly the Gram-positive to
  Gram-negative bacterial ratio decreased with increasing N input and
  was lower in 0-5 cm than in 5-10 cm peat. Total microbial abundance
  and total bacterial abundance were significantly higher in 0-5 cm peat
  than in 5-10 cm peat. It may be that more sensitive/targeted
  techniques, such as high-throughput pyrosequencing, 16s RNA clone
  library analysis and rRNA-targeted fluorescence in
  situ hybridization (FISH) or whole genome shotgun
  sequencing may be required to reveal bog microbial community responses
  to N loading.
DOI: 10.5517/ccdc.csd.cc21mwzk
title: CCDC 1895959: Experimental Crystal Structure Determination

description: Related Article: Višnja Vrdoljak, Mirna Mandaric, Tomica Hrenar, Ivica Ðilovic, Jana Pisk, Gordana Pavlovic, Marina Cindric, Dominique Agustin|2019|Cryst.Growth Des.|19|3000|doi:10.1021/acs.cgd.9b00231
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21mx0m
title: CCDC 1895960: Experimental Crystal Structure Determination

description: Related Article: Višnja Vrdoljak, Mirna Mandaric, Tomica Hrenar, Ivica Ðilovic, Jana Pisk, Gordana Pavlovic, Marina Cindric, Dominique Agustin|2019|Cryst.Growth Des.|19|3000|doi:10.1021/acs.cgd.9b00231
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21mx1n
title: CCDC 1895961: Experimental Crystal Structure Determination

description: Related Article: Višnja Vrdoljak, Mirna Mandaric, Tomica Hrenar, Ivica Ðilovic, Jana Pisk, Gordana Pavlovic, Marina Cindric, Dominique Agustin|2019|Cryst.Growth Des.|19|3000|doi:10.1021/acs.cgd.9b00231
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21mx2p
title: CCDC 1895962: Experimental Crystal Structure Determination

description: Related Article: Višnja Vrdoljak, Mirna Mandaric, Tomica Hrenar, Ivica Ðilovic, Jana Pisk, Gordana Pavlovic, Marina Cindric, Dominique Agustin|2019|Cryst.Growth Des.|19|3000|doi:10.1021/acs.cgd.9b00231
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.