cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0191444.10fu
title: SH0191444.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0191445.10fu
title: SH0191445.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.26579021.v1
title: Additional file 8 of H3K27me3-H3K4me1 transition at bivalent promoters instructs lineage specification in development

description: Additional file 8: Table S1. The information for antibodies used in this study.
DOI: 10.6084/m9.figshare.26579033.v1
title: Additional file 10 of H3K27me3-H3K4me1 transition at bivalent promoters instructs lineage specification in development

description: Additional file 10: Table S3. The information of all public sequencing data used in this study.
DOI: 10.6084/m9.figshare.26578991.v1
title: Additional file 3 of Functioning of a tripartite lignocellulolytic microbial consortium cultivated under two shaking conditions: a metatranscriptomic study

description: Additional file 3: Table S3. CAZy family gene expressions data of Citrobacter freundii so4, Sphingobacterium paramultivorum w15 and Coniochaeta sp. 2T2.1 at different shaking speed over time.
DOI: 10.6084/m9.figshare.26622496
title: Additional file 1 of Development of a machine learning-based acuity score prediction model for virtual care settings

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26723824.v1
title: Cotton is a source of isotopic biases

description: This data inculding the isotopic values of reference water, extracted water and sample weight before and after CVE experiments. The Raman data of cotton was also included.
DOI: 10.6084/m9.figshare.26723824
title: Cotton is a source of isotopic biases

description: This data inculding the isotopic values of reference water, extracted water and sample weight before and after CVE experiments. The Raman data of cotton was also included.
DOI: 10.6084/m9.figshare.26579024
title: Additional file 9 of H3K27me3-H3K4me1 transition at bivalent promoters instructs lineage specification in development

description: Additional file 9: Table S2. The sequence of all primers used in this study.
DOI: 10.15468/dl.jpcjt2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.248229 -33.090134, 148.248229 -33.094626, 148.250474 -33.094626, 148.250474 -33.090134, 148.248229 -33.090134))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068239-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26579021
title: Additional file 8 of H3K27me3-H3K4me1 transition at bivalent promoters instructs lineage specification in development

description: Additional file 8: Table S1. The information for antibodies used in this study.
DOI: 10.6084/m9.figshare.26579033
title: Additional file 10 of H3K27me3-H3K4me1 transition at bivalent promoters instructs lineage specification in development

description: Additional file 10: Table S3. The information of all public sequencing data used in this study.
DOI: 10.15468/dl.8wvfcv
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (2a7e3080-28a9-11dd-97cd-b8a03c50a862, 28eb1a3f-1c15-4a95-931a-4af90ecb574d, 66522820-055c-11d8-b84e-b8a03c50a862)",
 "TaxonKey is Trichechus inunguis (Natterer, 1883)"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068240-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26579024.v1
title: Additional file 9 of H3K27me3-H3K4me1 transition at bivalent promoters instructs lineage specification in development

description: Additional file 9: Table S2. The sequence of all primers used in this study.
DOI: 10.6084/m9.figshare.26622517.v1
title: Additional file 4 of Effects of oral health-related quality of life on total mortality: a prospective cohort study

description: Additional file 4. Total mortality aHRs based on female sex, according to the GOHAI score quartile encompassing General Health of the HQOL data.
DOI: 10.5517/ccdc.csd.cc2968d6
title: CCDC 2121187: Experimental Crystal Structure Determination

description: Related Article: P. Kalle, S.V. Tatarin, M.A. Kiseleva, A.Y. Zakharov, D.E. Smirnov, S.I. Bezzubov|2022|Acta Crystallogr.,Sect.E:Cryst.Commun.|78|169|doi:10.1107/S2056989022000287
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.6e2bb9
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.859086 -33.090134, 148.859086 -33.096872, 148.863578 -33.096872, 148.863578 -33.090134, 148.859086 -33.090134))"
 ]
}

 The dataset includes 30 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068241-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24517993
title: Smoothing level selection for density estimators based on the moments

description: This paper introduces an approach to select the bandwidth or smoothing parameter in multiresolution (MR) density estimation and nonparametric density estimation. It is based on the evolution of the second, third and fourth central moments and the shape of the estimated densities for different bandwidths and resolution levels. The proposed method has been applied to density estimation by means of multiresolution densities as well as kernel density estimation (MRDE and KDE respectively). The results of the simulations and the empirical application demonstrate that the level of resolution resulting from the moments method performs better with multimodal densities than the Bayesian Information Criterion (BIC) for multiresolution densities estimation and the plug-in for kernel densities estimation.
DOI: 10.6084/m9.figshare.24517993.v1
title: Smoothing level selection for density estimators based on the moments

description: This paper introduces an approach to select the bandwidth or smoothing parameter in multiresolution (MR) density estimation and nonparametric density estimation. It is based on the evolution of the second, third and fourth central moments and the shape of the estimated densities for different bandwidths and resolution levels. The proposed method has been applied to density estimation by means of multiresolution densities as well as kernel density estimation (MRDE and KDE respectively). The results of the simulations and the empirical application demonstrate that the level of resolution resulting from the moments method performs better with multimodal densities than the Bayesian Information Criterion (BIC) for multiresolution densities estimation and the plug-in for kernel densities estimation.
DOI: 10.6084/m9.figshare.26622622
title: Additional file 1 of Genomic introgressions from African rice (Oryza glaberrima) in Asian rice (O. sativa) lead to the identification of key QTLs for panicle architecture

description: Additional file 1: Table S1. CSSL information showing Og_MG12 introgression(s) for each line and their localization(s) (chromosome and left-right SSR markers). Target fragments were those selected so as to constitute the whole Og_MG12 genome with the 60 CSSLs. Table S2. Quantification of panicle traits in the CSSLs and parents Os_Caiapó and O.g_MG12. Abbreviations: RL, Rachis Length; PBN, Primary Branch Number; PBL, Primary Branch Length; SBN, Secondary Branch Number; SpN, Spikelet Number; SBN/PBN, ratio of SBN and PBN. Table S3. Variance analysis done on panicle traits for the 60 CSSLs and their parents phenotyped the year 1. Table S4. Significant line*trait associations observed in the population studied based on a Dunnett's test. Table S5. QTL and GWAS sites colocalized with the QTLs detected in this study. Table S6. Metrics of genome quality obtained for Os_Caiapó and Og_MG12 genome ONT sequencing assemblies. Table S7. Summary of the positions (in bp) of structural variations observed in the QTLs detected. Table S8. Genes described in the FunRiceGenes database located within each QTL detected in this study. Table S9. Gene synteny and description of loci annotated between the RM10 and RM420 markers in Os_Caiapó (RAP_db and MSU annotations) and Og_MG12 (RAP_db, MSU and OglaRS2). Genes highlighted in yellow are absent in the q_7 region of Og_MG12, genes highlighted in green are annotated in the Og_MG12 q_7 region but are absent in the Os_Caiapó genome, genes highlighted in light green are duplicated in the Og_MG12 q_7 region and genes highlighted in pink are annotated in the Og_MG12 q_7 region, are absent in the Os_ Caiapó q_7 region but are present in other chromosomes in the Os_Caiapó genome. Table S10. Amino acid modifications in proteins encoded by candidate genes in q_7. Table S11. TFBS variations in the promoters of candidate genes present in q_7. Abbreviations: EIN3, ETHYLENE-INSENSITIVE-LIKE3; C2H2, C2H2-Type Zinc finger; AP2, AP2-ERF; bHLH, basic helix-loop-helix; TCP, TEOSINTE-BRANCHED1; SBN, SQUAMOSA BINDING PROTEIN; NY-YB, nuclear factor Y; HB, HOMEODOMAIN; MADS, MADS-BOX; bZIP, basic leucine zipper; TBP, TATA-box-binding.
DOI: 10.6084/m9.figshare.26622622.v1
title: Additional file 1 of Genomic introgressions from African rice (Oryza glaberrima) in Asian rice (O. sativa) lead to the identification of key QTLs for panicle architecture

description: Additional file 1: Table S1. CSSL information showing Og_MG12 introgression(s) for each line and their localization(s) (chromosome and left-right SSR markers). Target fragments were those selected so as to constitute the whole Og_MG12 genome with the 60 CSSLs. Table S2. Quantification of panicle traits in the CSSLs and parents Os_Caiapó and O.g_MG12. Abbreviations: RL, Rachis Length; PBN, Primary Branch Number; PBL, Primary Branch Length; SBN, Secondary Branch Number; SpN, Spikelet Number; SBN/PBN, ratio of SBN and PBN. Table S3. Variance analysis done on panicle traits for the 60 CSSLs and their parents phenotyped the year 1. Table S4. Significant line*trait associations observed in the population studied based on a Dunnett's test. Table S5. QTL and GWAS sites colocalized with the QTLs detected in this study. Table S6. Metrics of genome quality obtained for Os_Caiapó and Og_MG12 genome ONT sequencing assemblies. Table S7. Summary of the positions (in bp) of structural variations observed in the QTLs detected. Table S8. Genes described in the FunRiceGenes database located within each QTL detected in this study. Table S9. Gene synteny and description of loci annotated between the RM10 and RM420 markers in Os_Caiapó (RAP_db and MSU annotations) and Og_MG12 (RAP_db, MSU and OglaRS2). Genes highlighted in yellow are absent in the q_7 region of Og_MG12, genes highlighted in green are annotated in the Og_MG12 q_7 region but are absent in the Os_Caiapó genome, genes highlighted in light green are duplicated in the Og_MG12 q_7 region and genes highlighted in pink are annotated in the Og_MG12 q_7 region, are absent in the Os_ Caiapó q_7 region but are present in other chromosomes in the Os_Caiapó genome. Table S10. Amino acid modifications in proteins encoded by candidate genes in q_7. Table S11. TFBS variations in the promoters of candidate genes present in q_7. Abbreviations: EIN3, ETHYLENE-INSENSITIVE-LIKE3; C2H2, C2H2-Type Zinc finger; AP2, AP2-ERF; bHLH, basic helix-loop-helix; TCP, TEOSINTE-BRANCHED1; SBN, SQUAMOSA BINDING PROTEIN; NY-YB, nuclear factor Y; HB, HOMEODOMAIN; MADS, MADS-BOX; bZIP, basic leucine zipper; TBP, TATA-box-binding.
DOI: 10.6084/m9.figshare.24248104
title: Additional file 1 of Multivariate GWAS of Alzheimer’s disease CSF biomarker profiles implies GRIN2D in synaptic functioning

description: Additional file 1: Table S1. Participant Characteristics CSF Biomarker Sample. Table S2. Participant Characteristics GWAS Discovery Sample. Table S3. Participant Characteristics GWAS Replication Sample. Table S4. Local heritability and variance explained. Table S5. PCA loadings (individual cohorts). Table S6. Sex differences in CSF biomarker PCs and associations with Alzheimer’s disease. Table S7. Comparison of PCA-based GWAS results vs. single biomarker GWAS results. Table S8. Comparison of meta-analysis results using fixed effect vs. random effects models. Table S9a. PC5 top hits in meta-analysis split by discovery datasets. Table S9b. PC5 non-AD synaptic functioning replication and meta-analysis for top SNPs (p &lt; 10E-3). Table S9c. SNP-based association results in Knight-ADRC dataset in GRIN2D region (bold font highlights nominally significant signals). Table S10. TWAS Fine-mapping analyses. Table S11. Gene-set enrichment analyses based on PC-based GWAS (top 20 gene sets [by P-value] are shown; bold font = significant after FDR [0.05]).
DOI: 10.6084/m9.figshare.26622649
title: Additional file 2 of It is not all about the alpha: elevated expression of p53β variants is associated with lower probability of survival in a retrospective melanoma cohort

description: Additional file 2: Table S2. AmpliSeq Custom DNA Panel Details.
DOI: 10.6084/m9.figshare.26622655
title: Additional file 4 of It is not all about the alpha: elevated expression of p53β variants is associated with lower probability of survival in a retrospective melanoma cohort

description: Additional file 4: Table S4. TP53 Variants.
DOI: 10.6084/m9.figshare.26622655.v1
title: Additional file 4 of It is not all about the alpha: elevated expression of p53β variants is associated with lower probability of survival in a retrospective melanoma cohort

description: Additional file 4: Table S4. TP53 Variants.
DOI: 10.15468/dl.yc5tzn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.80356 -33.094626, 147.80356 -33.096872, 147.810298 -33.096872, 147.810298 -33.094626, 147.80356 -33.094626))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068242-240626123714530/datasets/export for details.
DOI: 10.15468/dl.fjy7gp
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (28eb1a3f-1c15-4a95-931a-4af90ecb574d, 2a7e3080-28a9-11dd-97cd-b8a03c50a862, 66522820-055c-11d8-b84e-b8a03c50a862)",
 "TaxonKey is Trichechus inunguis (Natterer, 1883)"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068243-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hpfzpb
title: Occurrence Download

description: A dataset containing 120378705 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Year 1996-2024"
 ]
}

 The dataset includes 120378705 records from 1779 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068219-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qxp7q4
title: Occurrence Download

description: A dataset containing 414 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Aldina latifolia Spruce ex Benth."
 ]
}

 The dataset includes 414 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241536-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nfkasa
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Croatia",
 "TaxonKey is Ursus arctos arctos"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007713-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e7zt2n
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gentianella myriantha (Gilg) Holub"
 ]
}

 The dataset includes 58 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226462-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6fpt9c
title: Occurrence Download

description: A dataset containing 726 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lagurus lagurus (Pallas, 1773)"
 ]
}

 The dataset includes 726 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240295-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5h9kwc
title: Occurrence Download

description: A dataset containing 638 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hesperevax sparsiflora (A.Gray) Greene"
 ]
}

 The dataset includes 638 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241537-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qndvxs
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Taraxacum hallaisanense Nakai"
 ]
}

 The dataset includes 13 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240307-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qtdgcs
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Chile",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Leopardus guigna (Molina, 1782)"
 ]
}

 The dataset includes 42 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001619-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k3gv26
title: Occurrence Download

description: A dataset containing 3133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Clupea harengus Linnaeus, 1758"
 ]
}

 The dataset includes 3133 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240310-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggfg83
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Iris assadiana Chaudhary, G.Kirkw. & C.Weymouth"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254298-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8etc7q
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cybister godeffroyi (Wehncke, 1876), Cybister godeffroyi, Cybister godeffroyi (Wehncke, 1876), Cybister godeffroyi, 181336058)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 84 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240299-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2jbtza
title: Occurrence Download

description: A dataset containing 235275 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alopecurus geniculatus L.",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 235275 records from 844 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008784-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.