cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13921943
title: Fire slightly decreases on the short-term the competitive effects of a thorny cushion shrub in a semi-arid mountain steppe

description: These dataset include vegetation data for all study species in 4 treatments.In each of the four treatments (two fire conditions X two exposures), we randomly selected 25 shrubs and 25 paired open plots (Arzani and Abedi, 2015). There were 25 replicates of each treatment combination with approximately 8-9 replicates per block. All selected <i>O. cornuta</i> shrubs were precisely selected after checking leaves and stems of alive, healthy shrubs in nonburned sites and also relict basal stem of shrubs in burned sites. <i>Onobrychis cornuta</i> had different % cover and sizes in the two exposures (17.3 ± 2.1 % cover and 2.24 ± 0.29 m<sup>2</sup> size in north exposure and 4.3 ± 0.5 % cover and 1.20 ± 0.16 m<sup>2</sup> size in south exposure, n = 20 (with approximately 6-7 replicates per block), plots 4 m*4 m, unpublished data). After measuring the shrub size, each shrub individual was divided in edge and center positions. Three microhabitats (hereafter plots) including edge, center and open were finally selected (total: 300 plots including 25 edge, 25 center and 25 open plots in each of the four treatments). We sampled a fixed area in each of the three microhabitats. For the center and open plots, a quadrat of 20 cm*20 cm was used, whereas for the edge plots two rectangles of 10 cm*20 cm were set up along the northern and southern edges of the cushions. Each open plot was located at a very short distance (&lt; 2 m) from its paired shrub and in the same microtopographic position. In July 2015, two years after fire, we recorded cover of all vascular species present in both edge and center parts of the shrubs and in paired open areas. Vegetation sampling was recorded at a season where most species were in the flowering stage for better taxonomic identification. We only studied the short-term effect of fire because monitoring effect of fire for longer time and several years after fire is complex for edge and center microhabitats since they should be precisely located due to the disappearance of the track of the fire.<br>
DOI: 10.6084/m9.figshare.13921943.v1
title: Fire slightly decreases on the short-term the competitive effects of a thorny cushion shrub in a semi-arid mountain steppe

description: These dataset include vegetation data for all study species in 4 treatments.In each of the four treatments (two fire conditions X two exposures), we randomly selected 25 shrubs and 25 paired open plots (Arzani and Abedi, 2015). There were 25 replicates of each treatment combination with approximately 8-9 replicates per block. All selected <i>O. cornuta</i> shrubs were precisely selected after checking leaves and stems of alive, healthy shrubs in nonburned sites and also relict basal stem of shrubs in burned sites. <i>Onobrychis cornuta</i> had different % cover and sizes in the two exposures (17.3 ± 2.1 % cover and 2.24 ± 0.29 m<sup>2</sup> size in north exposure and 4.3 ± 0.5 % cover and 1.20 ± 0.16 m<sup>2</sup> size in south exposure, n = 20 (with approximately 6-7 replicates per block), plots 4 m*4 m, unpublished data). After measuring the shrub size, each shrub individual was divided in edge and center positions. Three microhabitats (hereafter plots) including edge, center and open were finally selected (total: 300 plots including 25 edge, 25 center and 25 open plots in each of the four treatments). We sampled a fixed area in each of the three microhabitats. For the center and open plots, a quadrat of 20 cm*20 cm was used, whereas for the edge plots two rectangles of 10 cm*20 cm were set up along the northern and southern edges of the cushions. Each open plot was located at a very short distance (&lt; 2 m) from its paired shrub and in the same microtopographic position. In July 2015, two years after fire, we recorded cover of all vascular species present in both edge and center parts of the shrubs and in paired open areas. Vegetation sampling was recorded at a season where most species were in the flowering stage for better taxonomic identification. We only studied the short-term effect of fire because monitoring effect of fire for longer time and several years after fire is complex for edge and center microhabitats since they should be precisely located due to the disappearance of the track of the fire.<br>
DOI: 10.5281/zenodo.4535088
title: Link to dataset related to article "A rapid and low-cost test for screening the most common Parkinson's disease-related GBA variants"

description: This record contains data related to article "A rapid and low-cost test for screening the most common Parkinson's disease-related GBA variants" Abstract: <strong>Introduction: </strong> Deleterious variants in the GBA gene confer a 2- to 20-fold increased risk of Parkinson's disease (PD) and are associated with a more severe disease course. The presence of a highly-similar pseudogene complicates genetic screening, both by Sanger and next-generation sequencing (NGS). Among PD-associated GBA variants, four missense substitutions (p.L444P, p.N370S, p.T369M, p.E326K) account for the majority of cases. Here, we aimed at developing an allele-specific PCR (AS-PCR) able to concomitantly detect the most common PD-related GBA variants. <strong>Methods: </strong> A multiplex PCR assay was designed using allele-specific oligonucleotides that distinguish the gene from the pseudogene and can exclusively amplify the variant alleles. Primer sequences and molarity, and thermal profiles were empirically optimized. The assay was validated on 4016 DNAs extracted by standard salting-out and previously analyzed by whole-exome sequencing (WES) followed by Sanger validation. <strong>Results: </strong> AS-PCRs performed on 4016 DNAs detected 103 variants; among them, 97 were true positives and 6 false positives. When comparing the results with the original WES data, for the "difficult" p.L444P, the number of false positives was 2/9 and 18/24 for multiplex-AS-PCR and WES, respectively. As we could have missed some p.L444P alleles by NGS, we verified the test performance on 50 DNAs from Sanger-validated p.L444P heterozygotes. All samples tested correctly. <strong>Conclusion: </strong> We set up and validated a rapid and inexpensive test for screening large cohorts of individuals for variants conferring a significant PD risk. This screening method is particularly interesting to identify patients who could benefit most from early access to personalized therapies.
DOI: 10.5281/zenodo.4535087
title: Link to dataset related to article "A rapid and low-cost test for screening the most common Parkinson's disease-related GBA variants"

description: This record contains data related to article "A rapid and low-cost test for screening the most common Parkinson's disease-related GBA variants" Abstract: <strong>Introduction: </strong> Deleterious variants in the GBA gene confer a 2- to 20-fold increased risk of Parkinson's disease (PD) and are associated with a more severe disease course. The presence of a highly-similar pseudogene complicates genetic screening, both by Sanger and next-generation sequencing (NGS). Among PD-associated GBA variants, four missense substitutions (p.L444P, p.N370S, p.T369M, p.E326K) account for the majority of cases. Here, we aimed at developing an allele-specific PCR (AS-PCR) able to concomitantly detect the most common PD-related GBA variants. <strong>Methods: </strong> A multiplex PCR assay was designed using allele-specific oligonucleotides that distinguish the gene from the pseudogene and can exclusively amplify the variant alleles. Primer sequences and molarity, and thermal profiles were empirically optimized. The assay was validated on 4016 DNAs extracted by standard salting-out and previously analyzed by whole-exome sequencing (WES) followed by Sanger validation. <strong>Results: </strong> AS-PCRs performed on 4016 DNAs detected 103 variants; among them, 97 were true positives and 6 false positives. When comparing the results with the original WES data, for the "difficult" p.L444P, the number of false positives was 2/9 and 18/24 for multiplex-AS-PCR and WES, respectively. As we could have missed some p.L444P alleles by NGS, we verified the test performance on 50 DNAs from Sanger-validated p.L444P heterozygotes. All samples tested correctly. <strong>Conclusion: </strong> We set up and validated a rapid and inexpensive test for screening large cohorts of individuals for variants conferring a significant PD risk. This screening method is particularly interesting to identify patients who could benefit most from early access to personalized therapies.
DOI: 10.6084/m9.figshare.11371884
title: Replication Data for "To racketeer among neighbors: spatial features of criminal collaboration in the American Mafia"

description: This folder includes code and data to replicate the analysis performed in "To racketeer among neighbors: spatial features of criminal collaboration in the American Mafia" (Andris and DellaPosta, et al. 2021) in the International Journal of Geographical Information Science. The dataset includes a CSV nodelist of mafia members by name, family affiliation and spatially-joined geographical factors, and an undirected edgelist (CSV) of their connections. The executable code includes four JAVA files and one text file that contains executable R code.
DOI: 10.6084/m9.figshare.11371884.v2
title: Replication Data for "To racketeer among neighbors: spatial features of criminal collaboration in the American Mafia"

description: This folder includes code and data to replicate the analysis performed in "To racketeer among neighbors: spatial features of criminal collaboration in the American Mafia" (Andris and DellaPosta, et al. 2021). The dataset includes a CSV nodelist of mafia members by name, family affiliation and spatially-joined geographical factors, and an undirected edgelist (CSV) of their connections. The executable code includes four java files and one text file that contains executable R code.
DOI: 10.5281/zenodo.4536214
title: Tamarisk sap flux density before, during and after episodic defoliation

description: Measurements of stem sap flux on tamarisk trees planted in experimental open-top mesocosms. Half of the plants were experimentally defoliated on three occasions during the growing season while the other half served as control plants. Sap flux was measured from May 10, 2016 to November 11, 2016 in Boulder City, Nevada, USA,
DOI: 10.5281/zenodo.4536213
title: Tamarisk sap flux density before, during and after episodic defoliation

description: Measurements of stem sap flux on tamarisk trees planted in experimental open-top mesocosms. Half of the plants were experimentally defoliated on three occasions during the growing season while the other half served as control plants. Sap flux was measured from May 10, 2016 to November 11, 2016 in Boulder City, Nevada, USA,
DOI: 10.5281/zenodo.3556457
title: maharolls2014-splita

description: This deposit serves as a long-term archive for the unprocessed raw data behind the maharolls2014 table in my comprehensive dataset on religion and politics in India, which is available at https://github.com/raphael-susewind/india-religion-politics/tree/master/maharolls2014
DOI: 10.5281/zenodo.3556456
title: maharolls2014-splita

description: This deposit serves as a long-term archive for the unprocessed raw data behind the maharolls2014 table in my comprehensive dataset on religion and politics in India, which is available at https://github.com/raphael-susewind/india-religion-politics/tree/master/maharolls2014
DOI: 10.6084/m9.figshare.14806968
title: Bigwigs

description: Bigwigs
DOI: 10.6084/m9.figshare.14806968.v2
title: Bigwigs

description: Bigwigs
DOI: 10.6084/m9.figshare.14806968.v1
title: Bigwigs

description: Bigwigs
DOI: 10.15468/fda3kv
title: New ordinal names established by changes to the botanical code

description: This dataset contains the digitized treatments in Plazi based on the original journal article Reveal, James L. (2011): New ordinal names established by changes to the botanical code. Phytotaxa 30: 42-44, DOI: 10.11646/phytotaxa.30.1.2, URL: http://biotaxa.org/Phytotaxa/article/view/phytotaxa.30.1.2
DOI: 10.6084/m9.figshare.14120603
title: Panama Vegetation Time Series Maps

description: Panama Vegetation Time Series Maps for 1990-2016 with preliminary 2020 deforestation data. <br><br>(the official 2020/21 map will be made available at the end of the 2021 mapping period).<br>The following components are provided: <br><br>"PVCTSYYYYvN" are 30m resolution raster maps resulting from compositing of 60-100 classified Landsat images for each time step, where YYYY is the nominal year of the compositing time period. (1991 includes images from 1987-1991. 2001 includes images from 1997-2001. 2006 includes images from 2002-2006. 2011 includes images from 2007-2011. 2016 includes images from 2012-2016.) Maps are all in GeoTiff format.<br>"PVCTS_key.lyr" is a layer file that can be applied in ArcGIS for optimal display of categories.<br>"PVCTSColorKey" provides more detailed description of categories and can be used to create a key in other software. More details about the land cover classes can be found in the "PVCTSv2_SupplementaryInfo" file.<br><br>"PVCTSdeforest7cat_YYXX" are corresponding deforestation maps for activity occurring between years YY and XX. <br>"Deforest7cat.lyr" provides the layer file that can be applied in ArcGIS for suggested viewing and "PVCTS_Deforestation_ColorKey" provides a description of the categories and can be used to create a key in other software.<br>"PVCTSv2_SupplementaryInfo" provides information about the methods and data in the PVCTS composite and deforestation files. Accuracy assessments and error adjustments for the current PVCTS version are included in this document.<br><br>"MaxAgeYYYY" are maximum-vegetation-age raster maps based on aggregation of clearing observations from all images in the USGS Landsat archive with cloud-cover &lt;70%. These are 30m resolution rasters in GeoTiff format. Values indicate the maximum age that the vegetation can be in year YYYY based on the most recent clearing observation, or 99 if never observed to be cleared. A value of -1 means that the pixel was not observed to be cleared in year YYYY but it was observed to be cleared in year YYYY+1. A clearing observation occurs when the NBR (Normalized Burn Index) is below a season-based threshold (1000 to 3000) in a cloud-masked image. Many pixels are not observed each year due to cloud cover, thus these figures represent Maximum age (vegetation might be younger). The information in these layers has already been applied to the PVCTS maps, but not vice-versa (no other data is taken into account beyond NBR threshold).<br><br>"metadata_spatial_ss" provides the spatial metadata for all GeoTiff files. Projection is in WGS_1984_UTM_Zone_17N.<br>
DOI: 10.15468/q5xuy5
title: Description of larva and pupa of the weevil Hybolabus amazonicus Voss (Attelabidae: Attelabinae), a leaf roller on Brazil nut (Bertholletia excelsa)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vanin, Sergio Antonio, Bená, Daniela de Cássia (2020): Description of larva and pupa of the weevil Hybolabus amazonicus Voss (Attelabidae: Attelabinae), a leaf roller on Brazil nut (Bertholletia excelsa). Papéis Avulsos de Zoologia 60 (3): 1-8, DOI: 10.11606/1807-0205/2020.60.special-issue.03
DOI: 10.15468/fmnfn9
title: Descriptions of larval and pupal morphologies of Macrohyliota militaris (Erichson) (Silvanidae: Brontinae: Brontini)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Liu, Zhenhua, Ślipiński, Adam, Pang, Hong, Guangzhou, State Key Laboratory of Biocontrol. (2020): Descriptions of larval and pupal morphologies of Macrohyliota militaris (Erichson) (Silvanidae: Brontinae: Brontini). Papéis Avulsos de Zoologia 60 (5): 1-7, DOI: 10.11606/1807-0205/2020.60.special-issue.05
DOI: 10.5281/zenodo.4909343
title: Metadata Prediction project data/processed_data

description: Processed data associated with the Metadata Prediction project. See metadata-prediction for more information.<br>
DOI: 10.5281/zenodo.4909342
title: Metadata Prediction project data/processed_data

description: Processed data associated with the Metadata Prediction project. See metadata-prediction for more information.<br>
DOI: 10.5281/zenodo.4984669
title: DEM

description: DEM
DOI: 10.5281/zenodo.4984668
title: DEM

description: DEM
DOI: 10.5517/ccdc.csd.cc1pgtdc
title: CCDC 1563373: Experimental Crystal Structure Determination

description: Related Article: Maxime Rémond, Pauline Colinet, Erwan Jeanneau, Tangui Le Bahers, Chantal Andraud, Yann Bretonnière|2021|Dyes Pigm.|193|109485|doi:10.1016/j.dyepig.2021.109485
DOI: 10.5517/ccdc.csd.cc22b4sc
title: CCDC 1916382: Experimental Crystal Structure Determination

description: Related Article: Xiang-Hua Zhao, Chun-Bo Duan, Xiao Ma, Guo-Dong Zou, Jing Zhang, Hui Xu, Ling-Hai Xie, Shun-Dong Yuan, Yi-Jie Yang, Wei Huang|2021|Organic Electronics|95|106193|doi:10.1016/j.orgel.2021.106193
DOI: 10.5517/ccdc.csd.cc232j91
title: CCDC 1938842: Experimental Crystal Structure Determination

description: Related Article: Xiang-Hua Zhao, Chun-Bo Duan, Xiao Ma, Guo-Dong Zou, Jing Zhang, Hui Xu, Ling-Hai Xie, Shun-Dong Yuan, Yi-Jie Yang, Wei Huang|2021|Organic Electronics|95|106193|doi:10.1016/j.orgel.2021.106193
DOI: 10.5517/ccdc.csd.cc24v1mp
title: CCDC 1991242: Experimental Crystal Structure Determination

description: Related Article: David Elder, Paul Taylor, Robert O. Gould|1992|Thesis|||
DOI: 10.5517/ccdc.csd.cc24vr70
title: CCDC 1991912: Experimental Crystal Structure Determination

description: Related Article: K.S. Smirnova, E.A. Ivanova, T.S. Sukhikh, I.P. Pozdnyakov, V.V. Dotsenko, E.V. Lider|2021|Inorg.Chim.Acta|525|120490|doi:10.1016/j.ica.2021.120490
DOI: 10.5517/ccdc.csd.cc24vr92
title: CCDC 1991914: Experimental Crystal Structure Determination

description: Related Article: K.S. Smirnova, E.A. Ivanova, T.S. Sukhikh, I.P. Pozdnyakov, V.V. Dotsenko, E.V. Lider|2021|Inorg.Chim.Acta|525|120490|doi:10.1016/j.ica.2021.120490
DOI: 10.15468/3h6tcw
title: Description of the larva and pupa of Apion brevicorne Gerstaecker, 1854 (Coleoptera: Brentidae: Apioninae) with biological information

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lima, Rosana Maria de, Santos, Sandreli Berenice de Oliveira, Vaz, Stephanie, Gomes, Ana Laura Soares, Sousa, Wesley Oliveira de (2020): Description of the larva and pupa of Apion brevicorne Gerstaecker, 1854 (Coleoptera: Brentidae: Apioninae) with biological information. Papéis Avulsos de Zoologia 60 (8): 1-13, DOI: 10.11606/1807-0205/2020.60.special-issue.08
DOI: 10.15468/3zsn8g
title: Taxonomic study of the genus Promalactis Meyrick, 1908 (Lepidoptera: Oecophoridae) X. The commotica species-group, with descriptions of twenty-two new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wang, Shuxia, Liu, Chen (2021): Taxonomic study of the genus Promalactis Meyrick, 1908 (Lepidoptera: Oecophoridae) X. The commotica species-group, with descriptions of twenty-two new species. Zootaxa 4980 (2): 293-330, DOI: https://doi.org/10.11646/zootaxa.4980.2.4
DOI: 10.3886/e142641v1
title: Data and Code for "Why is the Rent so Darn High? The Role of Growing Demand to Live in Housing-Supply-Inelastic Regions"

description: Real rents measured in the United States CPI increased 17.4 log-points from 2000-2018. We present a spatial equilibrium framework to decompose the increase into several channels, including demand to live in housing-supply-inelastic cities. We find location demand contributed significantly: using parameterizations from the literature and a new rent index, we find it is responsible for between 17 and 73 percent of the overall rent increase, and an even larger share in cities where CPI is measured. The wide range is primarily due to a lack of consensus over the population elasticity to rents, so we estimate it by comparing the effects of demand shocks across cities of differing housing supply elasticities. We find that demand changes have similar effects across cities, suggesting a high population elasticity. Therefore, our preferred estimate is that location demand accounts for more than half of the increase. We discuss implications for housing supply policy. <br><br>
description: Smallest Geographic Unit: MSA
DOI: 10.6084/m9.figshare.14731929
title: Data set for paper "Micro-Computed tomography analysis of the lumbar pedicle wall" 10.1371/journal.pone.0253019

description: This is the data set used in manuscript PONE-D-20-38633 where we describe the lumbar pedicle wall microstructure based on micro-computed tomography (µCT), including analyses of the area fraction of the pedicle isthmus, which is an important factor contributing to the strength of pedicle screw construct.
DOI: 10.6084/m9.figshare.14731929.v1
title: Data set for manuscript no. PONE-D-20-38633 "Micro-Computed tomography analysis of the lumbar pedicle wall"

description: This is the data set used in manuscript PONE-D-20-38633 where we describe the lumbar pedicle wall microstructure based on micro-computed tomography (µCT), including analyses of the area fraction of the pedicle isthmus, which is an important factor contributing to the strength of pedicle screw construct.
DOI: 10.15468/mz5ymm
title: First species of Laselva Furth from Brazil (Chrysomelidae: Galerucinae: Alticini)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Rech, Tarcila, Linzmeier, Adelita Maria (2020): First species of Laselva Furth from Brazil (Chrysomelidae: Galerucinae: Alticini). Papéis Avulsos de Zoologia 60 (9): 1-4, DOI: 10.11606/1807-0205/2020.60.special-issue.09
DOI: 10.25345/c5r235
title: MassIVE MSV000087655 - 20210618-Q1113-NRPS-GNPS-MASSIVE
title: This protocol aims to provide researchers with a basic workflow for reliably and reproducibly creating molecular networks from mass spectrometry data using GNPS. The workflows for GNPS molecular networking described in this protocol can be performed in any laboratory with access to a tandem mass spectrometer, which is usually connected to an HPLC system.
DOI: 10.7910/dvn/n6qhlz
title: Perspective Study of Bio-CNG In India

description: It takes several of years for dead organisms to get converted into fuels. Continues usage of these fuels is the major concern of depletion of it. BioCNG is a purified form of biogas, in which all unwanted gases (&gt; 95%) of pure methane gas are removed. BioCNG is exactly the same as the natural gas. In India, we have inadequency in fuel sources, so we depend on oil-rich countries. Today there is a burning need for alternative fuels because fossil fuels are getting vanished. It is therefore necessary to find another source of energy.A replacement to those exhausting resources can be made by using Bio CNG. Bio-CNG is a good automotive fuel and has lower emissions and makes it more environmentally friendly than biogas and other fuels.. Bio-CNG is much cheaper than other competitive fuels. The biogas produced from anaerobic digestion are further processed and hydrogen sulphide and carbon dioxide are removed so that the final product contains 90% - 95% methane to be used as BioCNG. IIf the Government of India focuses on Bio CNG, then there will be a reduction in imports of petroleum products, thus saving a significant amount of foreign exchange every year.