cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/l0ac2x
title: Reunion Island and Mayotte FastQ Data Generated with MiFish Primers for the Study: Environmental DNA illuminates the darkness of mesophotic assemblages of fishes from West Indian Ocean. Submitted in Plos One.

description: This FastQ dataset originates from environmental DNA (eDNA) sampling conducted on Réunion and Mayotte Islands. The samples were amplified using MiFish primers, targeting mitochondrial DNA specific to fishes, to investigate ichthyological assemblages in mesophotic habitats of the Western Indian Ocean. These data were utilized in the study titled "Environmental DNA illuminates the darkness of mesophotic assemblages of fishes from the West Indian Ocean", submitted by Emmanuel Corse, Marie Gimenez, Estelle Crochelet, Anaïs Paulin-Fayolle, Florian Campagnari, Océane Desbonnes, Léo Broudic, Patrick Durville, Florence Trentin, Gabriel Barathieu, Clément Delamare, Thomas Gautier, Camille Loisil, Patrick Plantard, Sébastien Quaglietti, Sarah Chordekar, Daniel Swan, Thierry Mulochau, and Natacha Nikolic.
DOI: 10.57745/lv0abe
title: Identification of microbiological hazards associated with 17 Ready-To-Eat dishes, sold in France

description: Hazard identification serves to establish that the hazard is probable or actual in the food product and to document important known information about the relationships and interactions between the hazard, the food and the host, and also their relationship to human disease. Within the INRAE-funded project RisqueConso, a hazard identification for 17 Ready-To-Eat dishes sold in France was carried out. Results are presented here. The methodology could be applied to other food commodities.
DOI: 10.57745/irqoel
title: ArtSymbioCyc, a metabolic network database collection dedicated to insect symbioses

description: The ArtSymbioCyc database is a collection of genomic resources for insect hosts and their obligate symbiotic or commensal bacteria annotated with the CycADS information system. Dedicated to metabolism, ArtSymbioCyc uses the powerful tools of the BioCyc community to analyze, compare and model the metabolic networks of the symbiotic partners on a genome-wide scale (including pathways, reactions or metabolites). The ArtSymbioCyc database collection is a dedicated resource that provides tools to study and compare the adaptive metabolic capacities of symbiotic organisms and to identify specific targets that may destabilize symbiotic equilibria and be useful for pest control. Here we put the functional annotation data used to reconstruct the metabolic networks from the different databases, as well as the reactions and metabolic networks that were inferred.
DOI: 10.57745/kmpqsg
title: Raw data for the manuscript "Does hairiness of Capsicum annum L. favor Amblyseius swirskii oviposition?"

description: This dataset gathers the R script and the raw data related to: - the documentation of 22 varieties of pepper plant: (i) names: names-varieties-capsicum annuum.csv; (ii) plant morphology details: plant-height-flower-leaves.csv; (iii) leaf structure: leaf measurements.csv; (iii) leaf hairiness: plant-hair.csv - the results of the no-choice experiment on Amblyseius swirskii egg laying on 5 pepper plant varieties during 3 weeks: (i) first week: data-feuilles-comptage1.csv; (ii) second week: data-feuilles-comptage2.csv; (iii) third week: data-feuilles-comptage3.csv (iv) leaf hairiness measures: scan-2022.csv
DOI: 10.57745/lel1qe
title: Lab-scale biodegradation of compostable materials

description: The biodegradation of the different types of plastics was analyzed according to NF ISO 14855-1 (2012) for industrial composting conditions (58 °C, 50 % humidity) using a miniaturized set-up described by Salomez, M., George, M., Fabre, P., Touchaleaume, F., Cesar, G., Lajarrige, A., Gastaldi, E. 2019. A comparative study of degradation mechanisms of PHBV and PBSA under laboratory-scale composting conditions. Polymer Degradation and Stability, 167, 102-113.
DOI: 10.15468/dl.22jv8m
title: Occurrence Download

description: A dataset containing 8408 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Amphibia)",
 "StateProvince is one of (cundinamarca)",
 "BasisOfRecord is one of (Material sample, Material citation, Specimen)"
 ]
 }
 ]
}

 The dataset includes 8408 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032079-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/nav8ii
title: Supplementary table for chapter 3 of manuscript: "Metagenomic analysis of cultivated and wild carrots reveals different virome fingerprints and provides insight into viral fluxes between carrot populations"

description: Supplementary table S4 "Results for the co-occurrence analysis presented in Figure 5 of the main text. Positive associations between virus pairs are highlighted in red" of manuscript titled: "Metagenomic analysis of cultivated and wild carrots reveals different virome fingerprints and provides insight into viral fluxes between carrot populations"
DOI: 10.57745/myxhhj
title: Fiches incertitudes des modèles hydrologiques de surface du projet Explore2 : B Meuse

description: Ensemble de fiche descriptives des incertitudes du projet Explore2 aux points de simulation pour la région hydrologique B Meuse Accompagnement de lecture des fiches Incertitudes Le projet Explore2 a produit une quantité inédite de données hydrologiques. Ainsi, des ensembles de projections hydrologiques ont été élaborés sur près de 4000 points de simulation répartis en France hexagonale. Les fiches incertitudes visent à décrire les incertitudes de ces ensembles pour chacun des 3991 points de simulations hydrologiques (surface) obtenus avec la méthode de correction ADAMONT, pour trois indicateurs: QA, QJXA, et QMNA. Les valeurs numériques ne doivent pas être lues sur ces fiches, mais dans les fichiers de données brutes ou d’indicateurs pré-calculés mis à disposition, comme les fiches de synthèse, sur le portail « DRIAS les futurs de l’eau ». Ce document a pour objectif d’expliciter le contenu de ces fiches de synthèse des incertitudes.
DOI: 10.57745/iyu0mr
title: Fiches incertitudes des modèles hydrologiques de surface du projet Explore2 : W Isère

description: Ensemble de fiche descriptives des incertitudes du projet Explore2 aux points de simulation pour la région hydrologique W Isère Accompagnement de lecture des fiches Incertitudes Le projet Explore2 a produit une quantité inédite de données hydrologiques. Ainsi, des ensembles de projections hydrologiques ont été élaborés sur près de 4000 points de simulation répartis en France hexagonale. Les fiches incertitudes visent à décrire les incertitudes de ces ensembles pour chacun des 3991 points de simulations hydrologiques (surface) obtenus avec la méthode de correction ADAMONT, pour trois indicateurs: QA, QJXA, et QMNA. Les valeurs numériques ne doivent pas être lues sur ces fiches, mais dans les fichiers de données brutes ou d’indicateurs pré-calculés mis à disposition, comme les fiches de synthèse, sur le portail « DRIAS les futurs de l’eau ». Ce document a pour objectif d’expliciter le contenu de ces fiches de synthèse des incertitudes.
DOI: 10.57745/jj0zei
title: Genomic signatures of climate-driven (mal)adaptation in an iconic conifer, the English yew (Taxus baccata L.)

description: This dataset consists of a Variant Call Format (VCF) file containing genomic data from Taxus baccata (European yew). The dataset includes 11,374 single nucleotide polymorphisms (SNPs) identified across 490 individual trees sampled from across the European range of the species. This dataset was used to carry out a study investigating patterns of local adaptation and to assessing the risk of climate maladaptation using genomic offset approaches.
DOI: 10.57745/op1jfc
title: Catalogs of solar observations of Meudon and Haute Provence Hα heliographs (1954-2004) and their instrumental capabilities

description: Hα heliographs are imaging instruments designed to produce monochromatic images of the solar chromosphere at fast cadence (60 s or less). They are designed to monitor the dynamic phenomena of solar activity, such as flares or material ejections. Meudon and Haute Provence observatories started systematic observations in the frame of the International Geophysical Year (IGY 1957) with Lyot filters. This technology evolved several times until 1985 with tunable filters allowing to observe alternatively the line wings and core (variable wavelength). More than 6 million images were produced during 50 years, mostly on 35 mm films Catalogs of observations are available with this paper and data (off line) can be requested. We present the capabilities of the successive versions of the Hα instruments in operation between 1954 and 2004, and describe briefly the new heliograph (MeteoSpace) which operates since January 2024 at Calern Observatory.
DOI: 10.57745/n9z0bn
title: Root mechanical traits of 12 herbaceous species

description: This dataset contains root mechanical traits of 12 herhaceous species that were used in the publication Mao et al. OIKOS.
DOI: 10.57745/ndhfxh
title: Apple scab susceptibility symptoms in a diversity orchard measured since 2018

description: In the context of pesticide reduction in orchards, 416 different accessions of Malus sp were planted onto three replicated blocks in a test parcel near Angers (France). This parcel is managed with a low input of fungicides in order to assess the plant response to the fungus Venturia inaequalis, the organism responsible for the apple scab disease. These data come from observations carried out since 2018 on the site ‘La Rétuzière’ of the Horticulture Experimental Facility based in the Loire Valley in France The dataset is enriched every year. Dans le contexte de la réduction des pesticides en vergers, 416 accessions différentes de Malus sp ont été plantées en trois blocs répétés dans une parcelle d'essai près d'Angers (France). Cette parcelle est gérée avec un apport réduit de fongicides afin d'évaluer la réponse des plantes au champignon Venturia inaequalis, l'organisme responsable de la tavelure du pommier. Ces données proviennent d'observations réalisées depuis 2018 sur le site de « La Rétuzière » de l'Unité Expérimentale d'Horticulture basée dans la Vallée de la Loire en France. Le jeu de données est enrichi chaque année.
DOI: 10.15468/dl.vyj57r
title: Occurrence Download

description: A dataset containing 165 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.hascoordinate = TRUE
 AND occurrence.hasgeospatialissues = FALSE
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.taxonkey = 2367312 OR occurrence.acceptedtaxonkey = 2367312 OR occurrence.kingdomkey = 2367312 OR occurrence.phylumkey = 2367312 OR occurrence.classkey = 2367312 OR occurrence.orderkey = 2367312 OR occurrence.familykey = 2367312 OR occurrence.genuskey = 2367312 OR occurrence.specieskey = 2367312)
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 165 records were derived from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032070-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/lpj2s2
title: GNSS position solutions in Japan

description: This dataset includes solutions processed by ISTerre for all Japanese GNSS stations. These products are daily position time series (North, East and Vertical), in the ITRF14 reference frame, calculated from RINEX files using the double difference method with GAMIT software.
DOI: 10.57745/nn5xhc
title: VALODIG Data (I) - Biostimulant effect of methanizer digestate and its extracts on winter rye

description: This dataset gathers the data obtained during the VALODIG project, aiming at assessing the potential biostimulant effect of digestate from territorial methanizers and its extracts on winter rye. It contains data on germination rate, growth, development, total CN contents, and architecture for shoot and root parts, from three experiments carried out respectively on Petri dishes, hydroponically, and a soil-sand substrate. The scientific paper associated with these data is available at https://doi.org/10.1016/j.biteb.2025.102057
DOI: 10.57745/nebk4j
title: Raw data and script about the XyloSylve monitoring site

description: This dataset contains a decade of environmentl and biogeochemical monitoring from the XyloSylve facility. XyloSylve is an experimental platform that tests in situ the functioning of planted forests, managed with contrasted practices.
DOI: 10.57745/ogbiiu
title: 16S RNA metabarcoding dataset from microbiota of Label Rouge broiler carcass rinses

description: The dataset provides information on the bacterial composition of 465 Label Rouge broiler carcasses collected in a French slaughterhouse between september 2023 and february 2024. Carcasses were cuted in halves and 16S rRNA metabarcoding sequencing was performed before and after 7 days of storage at 4°C (on the two half of the same carcasse). Carcass rinses were pooled in groups of three to create one sample, resulting in a total of 310 sequenced samples. Amplicons from the region V3-V4 of 16S rRNA were sequenced with Illumina MiSeq technology. The aim of collecting these carcass microbial diversity data was to characterize bacterial species that are positively or negatively correlated with Campylobacter on fre-range chicken meat.
DOI: 10.25549/pcra-c14-48730
title: Redemption tidings, vol. 28, nos. 1-26, 4 Jan. - 19 Dec. 1952

description: [description english/roman)] Issued fortnightly (every two weeks). "A full gospel magazine for all believers" -- subtitle.
DOI: 10.15468/dl.t8gnrx
title: Occurrence Download

description: A dataset containing 398 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Poliquetos litorales de la región norte y centro del estado de Veracruz"
 ]
}

 The dataset includes 398 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254655-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-48838
title: Redemption tidings, vol. 28, nos. 1-26, 4 Jan. - 19 Dec. 1952

description: [description english/roman)] Issued fortnightly (every two weeks). "A full gospel magazine for all believers" -- subtitle.
DOI: 10.15468/dl.ghyqyx
title: Occurrence Download

description: A dataset containing 18876 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Aythya nyroca (Güldenstädt, 1770)"
 ]
}

 The dataset includes 18876 records from 162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057417-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wfck8w
title: Occurrence Download

description: A dataset containing 4362 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amaranthus hypochondriacus L."
 ]
}

 The dataset includes 4362 records from 173 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160917-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y8r29x
title: Occurrence Download

description: A dataset containing 839 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Chesneya Lindl. ex Endl."
 ]
}

 The dataset includes 839 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104991-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-48912
title: Redemption tidings, vol. 28, nos. 1-26, 4 Jan. - 19 Dec. 1952

description: [description english/roman)] Issued fortnightly (every two weeks). "A full gospel magazine for all believers" -- subtitle.
DOI: 10.15468/dl.8dd885
title: Occurrence Download

description: A dataset containing 24715 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Jabiru Hellmayr, 1906",
 "Year 2000-2022"
 ]
}

 The dataset includes 24715 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160919-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2rzxk5
title: Occurrence Download

description: A dataset containing 1171 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Yucca filifera Chabaud"
 ]
}

 The dataset includes 1171 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0203563-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dmzndk
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rhinella martyi Fouquet, Gaucher, Blanc & Vélez-Rodriguez, 2007)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 58 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057418-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uac3jf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chiasmocleis sapiranga Cruz, Caramaschi & Napoli, 2007)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057437-230224095556074/datasets/export for details.
DOI: 10.15468/dl.y888e5
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-6.98739 39.04521,-1.84060 39.04521,-1.84060 41.50753,-6.98739 41.50753,-6.98739 39.04521))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Helianthemum marifolium (L.) Mill."
 ]
}

 The dataset includes 32 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105003-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-50262
title: Redemption tidings, vol. 29, nos. 1-26, 2 Jan. - 18 Dec. 1953

description: [description english/roman)] Issued fortnightly (every two weeks). "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.563kxk
title: Occurrence Download

description: A dataset containing 3415 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amaranthus tuberculatus (Moq.) Sauer"
 ]
}

 The dataset includes 3415 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160915-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cspvrc
title: Occurrence Download

description: A dataset containing 8172 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Database_Coleoptera_Madagascar Biodiversity Center PBZT"
 ]
}

 The dataset includes 8172 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068519-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x8brrr
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hyloxalus pinguis (Rivero & Granados-Díaz, 1990))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057432-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-48719
title: Redemption tidings, vol. 28, nos. 1-26, 4 Jan. - 19 Dec. 1952

description: [description english/roman)] Issued fortnightly (every two weeks). "A full gospel magazine for all believers" -- subtitle.
DOI: 10.15468/dl.hrm2d4
title: Occurrence Download

description: A dataset containing 11868 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Manihot esculenta Crantz"
 ]
}

 The dataset includes 11868 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0203562-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.