cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23501826.v1
title: <strong> </strong> <strong>Exploring the Nexus of Nigerian Afro-pop Music, Cultural Erosion on Yoruba Youths' Values and Attitudes</strong>

description: The dataset contains information on Yoruba youths' attitudes and experiences with Afro-pop music. It consists of survey responses and demographic data. The survey asked about listening habits, emotional responses, playlist preferences, vulgarity in music, and impact on society. Demographic info was also collected. The dataset provides researchers with valuable insights into cultural values and the erosion of traditional values among Yoruba youths. It enables further analysis on the relationship between Afro-pop music, vulgarism, and cultural dynamics in Nigeria. <strong>Note:</strong> Due to the sensitivity of the topic and the potential for identification of participants, personal identifiers have been anonymized to ensure confidentiality and privacy, adhering to ethical guidelines and safeguards the privacy of the participants.
DOI: 10.60893/figshare.jcp.26999599.v1
title: Supplemental Online Material

description: Supplemental Online Material
DOI: 10.15468/dl.bt49pf
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thomasomys incanus (Thomas, 1894)"
 ]
}

 The dataset includes 43 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013251-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.19688031.v1
title: Growth and metabolism - coho salmon vs. steelhead trout

description: 1. Divergent energy acquisition and processing strategies associated with using different microhabitats may allow phenotypes to specialize and co-exist at small spatial scales. 2. To understand how ecological specialization affects differentiation in energy acquisition and processing strategies, we examined relationships among digestive physiology, growth, and energetics by performing captive experiments on juveniles of wild coho salmon (<em>Oncorhynchus kisutch</em>) and steelhead trout (<em>O. mykiss</em>) that exploit adjacent habitats along natural low-to-high energy flux gradients (i.e., pools versus riffles) in coastal streams. We predicted that: i) the specialization of steelhead trout to high-velocity, high energy habitats would result in elevated food intake and growth at the cost of lower growth efficiency relative to coho salmon; ii) the two species would differentiate along a rate-maximizing (steelhead trout) versus efficiency-maximizing (coho salmon) axis of digestive strategies matching their ecological lifestyle; and iii) the higher postprandial metabolic demand (i.e., specific dynamic action, SDA) associated with elevated food intake would occupy a greater fraction of the steelhead trout aerobic budget. 3. Relative to coho salmon, steelhead trout presented a pattern of faster growth and higher food intake but lower growth efficiency, supporting the existence of a major growth versus growth efficiency trade-off between species. After accounting for differences in ration size between species, steelhead trout also presented higher SDA than coho salmon, but similar intestinal transit time and lower assimilation efficiency. Both species presented similar aerobic budgets since the elevated SDA of steelhead trout was largely compensated by their higher aerobic scope relative to coho salmon. 4. Our results illustrate the key contribution of digestive physiology to the adaptive differentiation of juvenile growth, energetics, and overall performance of taxa with divergent habitat specializations along a natural productivity gradient.
DOI: 10.6084/m9.figshare.20024183.v2
title: EVIDENCE-BASED ONLINE MODEL PROCTORED EXAMINATION

description: This paper describes an innovative method developed to conduct online, synchronous, closed book Professional Exams. The results from the cohort that participated in this exam were used to establish the reliability and validity of this study.
DOI: 10.6084/m9.figshare.23014154.v1
title: Finding the optimal pattern of urban construction to increase user satisfaction

description: This research suggests a method for residential project managers to increase user satisfaction and ensure a quick return on investment by choosing a combination of construction elements that suit the customers' needs. To achieve such a pattern, criteria were considered according to the main goals of project management (Cost, Time, and Quality), and Acoustic comfort and Thermal comfort were selected to check the quality criteria, and also to compare and decide on the optimal pattern selection, from the WASPAS technique was exploited. After identifying the basics and concepts used in this research, a questionnaire for prioritizing the criteria was provided to the customers of residential buildings in the Tehran metropolis. The questionnaire results were analyzed with the pairwise comparisons system. Examining the results showed that Thermal comfort (33%), Acoustic comfort (32%), Construction cost (20%), and Construction time (15%) are the highest priority according to construction customers. Then, for each of the window, wall, and ceiling elements, two types of materials mostly used by the builders of residential projects in the Tehran metropolis were selected, and the characteristics corresponding to the selected criteria were identified in each of these elements. First, by comparing these elements, the best alternatives were determined. Then, the combination of these elements was compared, using a different method and the information from one of the projects in the Tehran metropolis. Comparing the results of these two methods revealed that both methods lead to a prevalent pattern (UPVC Window + Clay Block Wall + Joist & Block Ceiling).
DOI: 10.6084/m9.figshare.26808748.v1
title: Database of net ecosystem carbon balance across global wetland (<b>Supplementary data A.xlsx</b>) and dataset of dissolved organic/inorganic carbon across global wetland (<b>supplementary data B.xlsx</b>)

description: The database included vertical and lateral carbon inputs or exports across global wetland extracted from 250 in situ studies.
DOI: 10.17632/w4ttp6d7pb
title: Spatio-temporal graffiti in Belfast

description: To capture the multidimensional aspects of Belfast’s evolving muralscape we created an original dataset of graffiti images organised by the ‘site’ (general spatial area in which data collection was bound) in which they were collected and the ‘set’ (the entire range of temporal data collected in relation to a precise spatial location) to which they belong. We collated a total of 147 graffiti sets, spanning six predefined data collection sites within the database. Each set contains anywhere from two to 24 pieces of visual data, with a total of 680 individual pieces collected. The dataset is organised along axis of space and time to generate a visual record. Each mural set is geotagged by its Global Positioning System (GPS) coordinates. To construct the dataset, we defined temporal and spatial bounds. We limited the data collection to the years 1998 to 2022. These temporal bounds were set in line with the signing of the Good Friday Agreement, which marked a significant will to alter attitudes and ideologies for the sake of peace. We stopped recording new pieces in November 2022. The six sites are: the divided estates surrounding the Unionist Shankill and Nationalist Falls Roads, the interface area between them, a shared area surrounding the Royal Victoria hospital, an area along the Newtownards Road referred to as ‘Freedom Corner’ in East Belfast, and in predominantly Nationalist West Belfast we chose the area in the Gaeltacht Quarter where the Glenalina and Whiterock Roads intersect. The dataset allows for analysis on the temporal and spatial dimensions of murals in Belfast, creating understandings of changes in the way that the new messaging and imagery is thought through and painted for the public, offering a useful lens into local understanding of self and other. In concentrating on when and where graffiti is painted local political and social understandings can be deepened by understanding the way that murals change, or remain the same, across time. While the dataset is relatively small, building it has enabled us to tailor it to our project and research questions and set the spatial and temporal boundaries exactly as required. It allowed us unique insights into Belfast’s muralscape since the Good Friday Agreement. Given the novelty of the dataset, we invite other researchers to use it for further research or expand it further. While the geographical focus of this particular dataset is on Belfast, it also serves as a model that can be replicated for similar analysis in other geographical areas. Note: we consulted the following online and open access data sources to build our data set: the Extramural Activity interactive mural map, the Peter Moloney Collection (itself partly embedded within the Extramural Activity map), the Claremont College Collection, and Google Street View. Please use original attribution for any images used.
DOI: 10.6084/m9.figshare.13724098.v1
title: angle_distance_PDCT.mat

description: Angle and distance with respect the pole from the Deep Lab Cut output of video of the mice descending during the pole descent cliff task.
DOI: 10.6084/m9.figshare.1570462.v1
title: Effect of conductive substrate (working electrode) on the morphology of electrodeposited Cu2O

description: Cu2O thin fims were electrodeposited from a Cu(II) acetate solution containing 0.02 M<br>Copper(II) acetate (Cu(OAc)2) and 0.1 Msodium acetate (NaOAc) at pH 5.6, using three<br>different working conductive electrodes with approximately the same square resistance<br>-indium doped tin oxide glass (ITO/Glass), florine-doped tin oxide glass (FTO/Glass), and<br>Indium doped tin oxide Polyethylene terephthalate (ITO/PET)—under identical conditions<br>using a common growth condition. The Cu2O thin fims werecharacterized by means<br>ofscanning electron microscopy (SEM), x-raydiffraction (XRD),current density versus<br>growth time for Cu2O fims, and electrochemical impedance spectroscopy (EIS). The results<br>showed that the choice of substratematerials hasa crucial role in controlling of Cu2O growth.<br>The charge transfer resistance (Rct) of FTO/Glass-Cu2O exhibits the lowest value; this<br>means that FTO/Glass-Cu2O possess the highest electron transfer effiiency.All Cu2O fims<br>showed n-type semiconductor characteristic with charge carrier densities varying between<br>1.4 × 1018–1.2 × 1019 cm−3.
DOI: 10.6084/m9.figshare.22060922.v2
title: EID2_organism_interactions_raw_2022.csv

description: EID2_organism_interactions_raw_2022.csv contains organism-organism (cargo-carrier) interactions extracted from the Enhanced Infectious Diseases Database - EID2 (https://eid2.liverpool.ac.uk/). For full description of EID2 please refer to: https://www.nature.com/articles/sdata20154. All interactions im this file are supported by one genetic sequence or 4 or more publicaitons and is structured as follows: 1. cargo: name of cargo organism (species, subspecies or lower rank). 2. cargoID: EID2 ID of the cargo 3. cargoTaxID: NCBI taxid for the cargo 4. cargoRank: the rank of the cargo 5. cargoCategory: the taxonomic classification of the cargo (e.g., bacteria, virus, etc.) 6. carrier: name of carrier organism (species, subspecies or lower rank) 7. carrierID: EID2 ID of the carrier 8. carrierTaxID: NCBI taxid for the carrier 9. carrierRank: the rank of the carrier 10. carrierCategory: the taxonomic classification of the carrier. 11. sequencesNo: Total number of nucleotide sequences supporting the interaction. 12. papersNo: Total number of publications supporting the interaction.
DOI: 10.6084/m9.figshare.25309090.v1
title: Post-Award Reflective Practice Tool (hard copy version)

description: This two-stage tool enables professional recognition program (such as fellowship program) awardees to re-engage with the portfolios that they developed in order to be awarded the professional recognition. The tool supports self-paced, continued post-award reflective practice. This version of the tool is the hard copy version (for downloading, printing and completing by hand).
DOI: 10.6084/m9.figshare.27014038.v1
title: MeaslesPertussisDataset.xlsx

description: underlying data for "Measles and Pertussis outbreaks in England and Wales: a time-series analysis".<br>
DOI: 10.6084/m9.figshare.28661054.v1
title: POPULATION AVERAGE UNICORONAL CRANIOSYNOSTOSIS SKULL

description: Nineteen patients having UC were recruited at GOSH (age 9.8+/-4.1): DICOM images were collected, converted into skull 3D STL files using Simpleware ScanIP (Synopsys®) and processed using Meshmixer (Autodesk®). A standard geometric morphometric protocol was used for 3D shape processing: each model was cut along the Frankfurt plane and the outer surface of the skull was extracted. A template mesh was used and no-rigid iterative closest point registration (implemented in Matlab) was used to achieve a common discretisation for each model. A population average model was created by averaging node coordinates.
DOI: 10.6084/m9.figshare.4828942.v2
title: Brassica oleracea - CRootBox parameter file

description: CRootBox parameter file for Brassica oleracea<br>from:<br>Estimating the parameters of a 3-D root distribution function from root observations with the trench profile method: case study with simulated and field-observed root dataVansteenkiste J, Van Loon J, Garr̩ S, Pag̬s L, Schrevens E, Diels JPlant and Soil, 375, 75-88, 2014
DOI: 10.6084/m9.figshare.5128309.v1
title: Supplementary Material for: Prognostic Significance of AMP-Dependent Kinase Alpha Expression in Cervical Cancer

description: <b><i>Objectives:</i></b> Cervical cancer is one of the most common gynecological malignancies worldwide, and its association with the AMP-activated protein kinase (AMPK) is still unknown. We aimed to investigate the clinical correlation between AMPK expression and cervical cancer. <b><i>Methods:</i></b> The expression of AMPKα1, AMPKα2 and phosphorylated AMPKα (p-AMPKα) was determined immunohistochemically in 524 formalin-fixed, paraffin-embedded malignant and premalignant cervical tissues. Subsequently, associations with clinicopathological characteristics and patient survival were assessed. <b><i>Results:</i></b> AMPKα2 expression was observed in the cytoplasm and nucleus, while expression of AMPKα1 and p-AMPKα was mainly observed in the cytoplasm. p-AMPKα expression increased during the normal-to-tumor transition of cervical carcinoma (p &lt; 0.001), but, once cancer developed, the expression of AMPKα2 and p-AMPKα decreased in large-sized tumors when compared to smaller tumors (36 vs. 68%, p = 0.004 and 39 vs. 64%, p = 0.029, respectively). Notably, AMPKα2 expression was significantly associated with better disease-free survival (HR 0.29, 95% CI 0.10-0.86, p = 0.026). <b><i>Conclusion:</i></b> The AMPKα2 isoform showed potential as a favorable prognostic marker in cervical cancer. Therefore, additional studies are necessary to further clarify the complex contribution of AMPK isoforms and of phosphorylation status to cervical cancer progression and prognosis.
DOI: 10.17632/4gfm8jp6dr
title: An airway protection program revealed by sweeping genetic control of vagal afferents
DOI: 10.17632/8458pz722c
title: Open-source sequence validation (DIB)

description: Two open-source Magnetic Resonance Imaging (MRI) sequences were coded using PyPulseq and tested at two sites to demonstrate a sequence validation framework. Sequence scripts (.ipynb notebooks),  simulated and acquired data, reconstruction and analysis scripts, as well as images are included.  Pulseq system configurations of five scanners are included for replication.
DOI: 10.17632/h8y867fkry
title: Early stages in Ab1-42 spontaneous aggregation: an unbiased dataset from coarse-grained molecular dynamics simulations.

description: Soluble oligomers of Aβ-1-42 are widely recognized as crucial targets for the design of inhibitors for potential therapeutic intervention against Alzheimer´s disease. However, the intrinsically disordered character of this polypeptide poses serious difficulties for the experimental determination of conserved structural motifs. Indeed, initial aggregation steps are extremely challenging for state-of-the-art experimental techniques. Although molecular dynamics simulations harbor the potential to capture such initial association events, unbiased exploration of the conformational landscape available to unstructured dimers implies a significant computational cost.
Here, we provide a dataset of configurations of Aβ1-42 dimers obtained by coarse-grained molecular dynamics (MD) simulations using the SIRAH force field. Trajectories are provided in standard gromacs format and can be easily converted to fully atomistic representations for visualization and analysis using molecular visualization/analysis software. The dataset contains MD trajectories of Aβ1-42  that undergo spontaneous and unbiased dimerization. We provide the time series of 25 replicates simulated for 10 microseconds under room conditions and physiological salt concentration. These multiple aggregation events provide valuable information not only on new binding pockets formed by the dimeric interface but also monomeric hot spots that can be targeted by small molecules on high-throughput docking campaigns. Alternatively, Aβ1-42 dimers could be used as aggregation seeds in studies of Aβ secondary nucleation.
DOI: 10.6084/m9.figshare.16893436.v1
title: February 2021 Covid-19 Twitter Streaming Dataset

description: The file contains Tweet IDs* for COVID-19 related tweets collected in February, 2021 from Twitter's COVID-19 Streaming Endpoint via a custom script developed by the Social Media Lab (https://socialmedialab.ca/). Visit our interactive dashboard at https://stream.covid19misinfo.org/ for a preview and some general stats about this COVID-19 Twitter streaming dataset. For more info about Twitter's COVID-19 Streaming Endpoint, visit https://developer.twitter.com/en/docs/labs/covid19-stream/overview * Note: In accordance with Twitter API Terms, the dataset only includes Tweet IDs (as opposed to the actual tweets and associated metadata). To recollect tweets contained in this dataset, you can use programs such as Hydrator (https://github.com/DocNow/hydrator/) or the Python library Twarc (https://github.com/DocNow/twarc/).
DOI: 10.6084/m9.figshare.21512352.v1
title: Plant biomass data 2003-2019

description: Data on plant species annual biomass production in the Jena Main Experiment from 2003-2019 that was used in the publication Wagg et al. "Biodiversity–stability relationships strengthen over time in a long-term grassland experiment." Nature Communications (pre-publication version: DOI: https://doi.org/10.21203/rs.3.rs-1824129/v1). <br> The dataset includes the experimental plot code the year in whch biomass was colected the sown plant species richness (sowndiv) and columns for the absence (0) presence (1) of 60 plant species where they were sown in 2002. The prefix "BM_" is the biomass of the plant species in g per m2. Further information and requests for more detailed data can be found at: http://the-jena-experiment.de/index.php/main-experiment/ <br>
DOI: 10.6084/m9.figshare.25060145.v1
title: Supplementary Material for: A first case of acute flaccid myelitis related to enterovirus D-68 in Belgium

description: Introduction
We describe the first case of acute flaccid myelitis (AFM) related to enterovirus D-68 (EV-D68) infection in Belgium. The clinical and radiological presentation of AFM associated with EV-D68 although well described currently remains a challenging diagnosis. 
Through this interesting clinical case, we aimed to review the differential diagnosis of acute flaccid palsy in a child and discuss the specific point of interest related to AFM.
Case presentation
We present the case of a 4-year-old girl with a torticollis associated with an acute palsy of the right upper limb. The magnetic resonance imaging (MRI) revealed an increased T2 signal intensity of the entire central gray matter of the cervical cord with involvement of the posterior brainstem. 
A polymerase-chain-reaction (PCR) conducted on a naso-pharyngeal swab was found positive for EV-D68.
The definition of AFM proposed by the Center for Disease Control and Prevention (CDC) is an acute-onset flaccid weakness of one or more limbs in the absence of a clear alternative diagnosis and the radiological evidence of gray matter involvement on an MRI-picture, and our case fits these two criteria. 
A prompt and detailed work-up is required to distinguish this emergent disease from other forms of acute flaccid palsy.
The functional prognosis of AFM is poor, and there are no evidence-based treatment guidelines so far.
Conclusion
AFM is an emerging pathology that requires the attention of pediatricians to quickly rule out differential diagnoses and adequately manage the patient. Further research is needed to optimize treatments, improve outcomes, and provide scientifically based guidelines.
DOI: 10.6084/m9.figshare.25138712.v6
title: Main dataset

description: Main disease_PTC dataset and other files
DOI: 10.6084/m9.figshare.27312078.v1
title: A549.zip

description: Data used for DIRECT-NET
DOI: 10.6084/m9.figshare.4880072.v3
title: CAGE peaks annotation (hg38 v3)

description: <pre>Annotation files <br>= Transcript association * (Human phase1+2 set) hg38_liftover+new_CAGE_peaks_phase1and2_trans.txt (Format) 1) CAGE peak ID "(Old FANTOM5 CAGE Peak ID);(new TSS ID)" 2) Associated transcript ID 3) Distance between CAGE peak and associated transcript 4) Number of transcripts within 500bp (polII transcripts) or 50bp (non-polII transcripts) 5) All transcripts within the above cutoffs (500bp or 50bp) (Transcript ID:distance) = Gene/protein association * (Human phase1+2 set) hg38_liftover+new_CAGE_peaks_phase1and2_annot.txt (Format) 1) CAGE peak ID "(Old FANTOM5 CAGE Peak ID);(new TSS ID)" 2) Associated transcript ID 3) Distance between CAGE peak and associated transcript 4) EntrezGene GeneID 5) HGNC/MGI ID 6) UniProt ID 7) Associated gene name 8) Associated gene symbol 9) Associated gene synonym 10) Source of associated gene = CAGE peak name * (Human phase1+2 set) human_phase1and2_CAGE_Peak_name.txt (Format) 1) CAGE peak ID "(Old FANTOM5 CAGE Peak ID);(new TSS ID)" 2) New CAGE peak name 3) Old (Obsoleted) CAGE peak name = Annotation sources Jun. 16th, 2015 snapshots of the following databases * EntrezGene * Gencode (Human v22, Mouse vM4) * HGNC * MGI * UCSC Genome Browser (hg38/mm10) * UniProt </pre>