cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6bwr4u
title: Occurrence Download

description: A dataset containing 1402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than 50000",
 "Year is 2023",
 "DecimalLongitude is greater than or equal to 10.04",
 "DecimalLongitude is less than or equal to 10.15",
 "DecimalLatitude is greater than or equal to 55.84",
 "DecimalLatitude is less than or equal to 55.87"
 ]
}

 The dataset includes 1402 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032880-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3595937_d14
title: Additional file 5: of Comparative fiber property and transcriptome analyses reveal key genes potentially related to high fiber strength in cotton (Gossypium hirsutum L.) line MD52ne

description: Differentially expressed down-regulated genes at 15 DPA in MD52ne. Four hundred forty differentially expressed up-regulated genes at 15 DPA in MD90ne are included in this table. First column have G. hirsutum (TM-1) gene name followed by Arabidopsis gene name, TAIR 10 gene description, log2 ratio of reads per kilo-base per million reads (RPKM) between MD52ne and MD90ne, corresponded p value, adjusted p value and fold change (MD52ne over MD90ne). (XLSX 63Â kb)
DOI: 10.15468/dl.knyyn2
title: Occurrence Download

description: A dataset containing 2074 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Penaeidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2074 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032881-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3596147_d10
title: MOESM3 of Deciphering targeting rules of splicing modulator compounds: case of TG003

description: Additional file 3: Table S2. Comparison of Δψ values of 45 TG003 skip-enhanced human exons and their homologous mouse exons. Ensembl IDs and all information used to identify and classify mouse exons that correspond to human skip-enhanced exons (Δψ ≤ 0.05) are provided with in this table.
DOI: 10.6084/m9.figshare.c.3596147_d11
title: MOESM5 of Deciphering targeting rules of splicing modulator compounds: case of TG003

description: Additional file 5: Table S3. Exon feature scores of all 21 human TG003 skip-enhanced exons and mouse insensitive exons. Ensembl IDs, genomic coordinates and all information used to draw FigureÂ 5 box plots (column 3 and 4) are provided with in this table.
DOI: 10.6084/m9.figshare.c.3596174_d1
title: Additional file 4: Table S4. of Microsatellite marker analysis of Haemonchus contortus populations from Pakistan suggests that frequent benzimidazole drug treatment does not result in a reduction of overall genetic diversity

description: Summary statistics of the isotype-1 Î˛-tubulin fragment diversity (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3596135_d10
title: Additional file 2: Table S2. of Comparison of the miRNA profiles in HPV-positive and HPV-negative tonsillar tumors and a model system of human keratinocyte clones

description: Significant (Pâ
DOI: 10.6084/m9.figshare.c.3596186_d1
title: Additional file 1: of Modeling leukocyte trafficking at the human blood-nerve barrier in vitro and in vivo geared towards targeted molecular therapies for peripheral neuroinflammation

description: GBS patient mononuclear leukocyte trafficking at the blood-nerve barrier in vitro . A video of merged digital photomicrographs in real time acquired between 10 and 15 min following infusion of an untreated GBS (AIDP variant) leukocytes across a cytokine stimulated monolayer of human primary endoneurial endothelial cells demonstrates leukocyte rolling, firm adhesion (phase bright), and some transmigration (phase dark) (Video 1). Following incubation of the same patient’s leukocytes with 500 ng/mL function neutralizing mouse anti-human αM integrin antibody demonstrates significant reduction in adhesion and transmigration in this model system (Video 2), providing evidence for the role of αM integrin signaling in pathogenic mononuclear cell trafficking at the blood-nerve barrier in vitro, with therapeutic implications for GBS.
DOI: 10.6084/m9.figshare.c.3596135_d11
title: Additional file 14: Table S7. of Comparison of the miRNA profiles in HPV-positive and HPV-negative tonsillar tumors and a model system of human keratinocyte clones

description: Rotated Component Matrix computed by Rotation Method: Varimax with Kaiser Normalization showing the components of a particular factor sorted by absolute value of loading for each variable. (XLS 146Â kb)
DOI: 10.6084/m9.figshare.c.3596180_d2
title: Additional file 1: of Refined stratified-worm-burden models that incorporate specific biological features of human and snail hosts provide better estimates of Schistosoma diagnosis, transmission, and control

description: SWB codes15.nb [an example of the SWB model implemented using Mathematica v10.2 software (Wolfram Research, Champaign IL. USA)] (NB 35 kb)
DOI: 10.6084/m9.figshare.c.3596135_d12
title: Additional file 8: Table S6. of Comparison of the miRNA profiles in HPV-positive and HPV-negative tonsillar tumors and a model system of human keratinocyte clones

description: Significantly (Pâ
DOI: 10.6084/m9.figshare.c.3596180_d4
title: Additional file 5: of Refined stratified-worm-burden models that incorporate specific biological features of human and snail hosts provide better estimates of Schistosoma diagnosis, transmission, and control

description: Infection data from Milalani village cross-sectional surveys (XLSX 55 kb)
DOI: 10.6084/m9.figshare.c.3596438_d2
title: Additional file 1: of Learning pathology using collaborative vs. individual annotation of whole slide images: a mixed methods trial

description: Junior student raw data. This spreadsheet contains all of the raw quiz score and qualitative data obtained from junior medical science students. This data underpins the findings in this report. (XLS 395 kb)
DOI: 10.6084/m9.figshare.c.3596444_d1
title: Additional file 2: of Helping Babies Breathe (HBB) training: What happens to knowledge and skills over time?

description: Biweekly HBB monitoring report format for calls between central and site teams. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3596453_d1
title: Additional file 1: Table S1. of Network analysis of microRNA and mRNA seasonal dynamics in a highly plastic sensorimotor neural circuit

description: Complete genomic sequences of miRs of interest from Gambelâ  s white-crowned sparrow. (XLS 28Â kb)
DOI: 10.6084/m9.figshare.c.3596453_d2
title: Additional file 4: of Network analysis of microRNA and mRNA seasonal dynamics in a highly plastic sensorimotor neural circuit

description: á  (XLSX 70Â kb)
DOI: 10.6084/m9.figshare.c.3596453_d4
title: Additional file 5: Table S3. of Network analysis of microRNA and mRNA seasonal dynamics in a highly plastic sensorimotor neural circuit

description: Significantly differentially expressed miRNAs &gt;2 fold. (XLS 33Â kb)
DOI: 10.15468/dl.qjjjkf
title: Occurrence Download

description: A dataset containing 1170 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sepiidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1170 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032882-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3596636_d14
title: Additional file 10: of Leaf transcriptome of two highly divergent genotypes of Urochloa humidicola (Poaceae), a tropical polyploid forage grass adapted to acidic soils and temporary flooding areas

description: Comparison of the SSRs from U. humidicola, Panicum maximum and Brachiaria ruziziensis. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3596639_d15
title: Additional file 2: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

description: Dataset S1. Transcript FPKM values for Dirofilaria immitis tissue transcriptome. (XLSX 369 kb)
DOI: 10.6084/m9.figshare.c.3596636_d16
title: Additional file 9: of Leaf transcriptome of two highly divergent genotypes of Urochloa humidicola (Poaceae), a tropical polyploid forage grass adapted to acidic soils and temporary flooding areas

description: List of genes composing the cellulose and lignin pathways among the U. humidicola unigenes. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3596639_d16
title: Additional file 3: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

description: Table S1. List of over-represented GO terms and their associated p-values for tissue-associated D. immitis genes detected by either transcriptomics (red) or proteomics (blue). (XLSX 984 kb)
DOI: 10.6084/m9.figshare.c.3596636_d17
title: Additional file 17: of Leaf transcriptome of two highly divergent genotypes of Urochloa humidicola (Poaceae), a tropical polyploid forage grass adapted to acidic soils and temporary flooding areas

description: Amplification success of the 31 primer pairs for the qPCR assays for both DNA and RNA of genotypes BRS-Tupi and BH031. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3596636_d18
title: Additional file 8: of Leaf transcriptome of two highly divergent genotypes of Urochloa humidicola (Poaceae), a tropical polyploid forage grass adapted to acidic soils and temporary flooding areas

description: List of genes composing the C4 photosynthetic pathway among the U. humidicola unigenes. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3596681_d1
title: Additional file 3: of Parallel or convergent evolution in human population genomic data revealed by genotype networks

description: This ZIP file contains the following documents. 1. genes_with_excess_of_cycles_exonLength_nucleotideMutations.txt: List of genes with excess of cycles when randomized networks are constructed from entire gene coding sequences (all four nucleotide mutations allowed). 2. gprofiler_results_100fragmentedGenes_largerthan10.xlsx: Gene ontology enrichment analysis results for the 100 most fragmented genes with a network comprising more than 10 sequences. 3. gprofiler_results_GO_function_process.xlsx: Gene ontology enrichment analysis of molecular functions and biological processes for the 42 genes with an excess of cycles. 4. gprofiler_results_GO_function_process_NoHLAGenes.xlsx: Gene ontology enrichment analysis of molecular functions and biological processes for the 42 genes with an excess of cycles, excluding the HLA genes. 5. gprofiler_results_KEGG.xlsx: KEGG pathways enrichment analysis for the 42 genes with an excess of cycles. 6. gprofiler_results_reactome.xlsx: Reactome pathways enrichment analysis for the 42 genes with an excess of cycles. 7. list_of_most_fragmented_networks.txt: List of 100 most fragmented networks among all haplotype networks comprising more than 10 nodes. Fragmentation is computed as the number of components divided by the size of the network (higher values correspond to greater fragmentation). (ZIP 63 kb)
DOI: 10.6084/m9.figshare.c.3596684_d1
title: Additional file 1: of BCL9L expression in pancreatic neoplasia with a focus on SPN: a possible explanation for the enigma of the benign neoplasia

description: Mean RNA expression Ratio derived from two independent experiments, normalized against GAPDH. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3596696_d1
title: Additional file 1: Table S1. of Characterization of mycobacteria and mycobacteriophages isolated from compost at the São Paulo Zoo Park Foundation in Brazil and creation of the new mycobacteriophage Cluster U

description: Similarity of sequenced phages with phages deposited in the GenBank. The phage genomes sequences were compared with sequences deposited in the GenBank using the Basic Local Alignment Search Tool (BLAST: http://blast.ncbi.nlm.nih.gov/Blast.cgi ). (XLSX 49 kb)
DOI: 10.15468/dl.2fnh4x
title: Occurrence Download

description: A dataset containing 1506 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than 50000",
 "Year is 2024",
 "DecimalLongitude is greater than or equal to 10.04",
 "DecimalLongitude is less than or equal to 10.15",
 "DecimalLatitude is greater than or equal to 55.84",
 "DecimalLatitude is less than or equal to 55.87"
 ]
}

 The dataset includes 1506 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032883-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3596864_d7
title: Additional file 7: Table S7. of Genomic and transcriptomic comparison of nucleotide variations for insights into bruchid resistance of mungbean (Vigna radiata [L.] R. Wilczek)

description: SCPs involved in metabolic pathways. (XLS 35Â kb)
DOI: 10.6084/m9.figshare.c.3596906_d4
title: Additional file 1: of On Predicting lung cancer subtypes using ‘omic’ data from tumor and tumor-adjacent histologically-normal tissue

description: Formatted TCGA dataset used in this study, along with sample IDs for classification task TAHNADC vs.TumorADC in gene expression. (CSV 5182 kb)
DOI: 10.6084/m9.figshare.c.3596864_d8
title: Additional file 5: Table S5. of Genomic and transcriptomic comparison of nucleotide variations for insights into bruchid resistance of mungbean (Vigna radiata [L.] R. Wilczek)

description: Transcriptome-based NVs on exons of genes between bruchid-susceptible mungbean NM92 and bruchid-resistant mungbean TC1966 and RIL59. (XLS 57Â kb)
DOI: 10.6084/m9.figshare.c.3596927_d1
title: Additional file 3: of xHMMER3x2: Utilizing HMMER3â  s speed and HMMER2â  s sensitivity and specificity in the glocal alignment mode for improved large-scale protein domain annotation

description: List of 140 Pfam domains with annotation inconsistencies. (TXT 10 kb)
DOI: 10.6084/m9.figshare.c.3596927_d2
title: Additional file 1: of xHMMER3x2: Utilizing HMMER3â  s speed and HMMER2â  s sensitivity and specificity in the glocal alignment mode for improved large-scale protein domain annotation

description: List of top 1500/1000/500 better HMMER2 Pfam29 domain models. (TXT 76 kb)
DOI: 10.6084/m9.figshare.c.3596894_d7
title: Additional file 7: Table S2. of Divergent evolutionary and epidemiological dynamics of cassava mosaic geminiviruses in Madagascar

description: List of the sequences used in the analyses. (XLSX 67 kb)
DOI: 10.6084/m9.figshare.c.3596930_d2
title: Additional file 1: of Identification of microRNA profile specific to cancer stem-like cells directly isolated from human larynx cancer specimens

description: Data Set Entire set of top differentially expressed miRNAs is given in Additional Data Set. For each miRNA probe, fold change and p value information is provided. (XLSX 30Â kb)
DOI: 10.6084/m9.figshare.c.3596927_d3
title: Additional file 2: of xHMMER3x2: Utilizing HMMER3â  s speed and HMMER2â  s sensitivity and specificity in the glocal alignment mode for improved large-scale protein domain annotation

description: List of original vs re-computed Pfam domain annotations for the human UniProt/SwissProt sequences. (TXT 12216 kb)
DOI: 10.6084/m9.figshare.c.3596936_d1
title: Additional file 11: of Transcriptomic comparison between two Vitis vinifera L. varieties (Trincadeira and Touriga Nacional) in abiotic stress conditions

description: Primers used for amplification of up- and down- regulated genes by RT-qPCR. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3596942_d1
title: Additional file 1: of Optimized pipeline of MuTect and GATK tools to improve the detection of somatic single nucleotide polymorphisms in whole-exome sequencing data

description: Supplementary information. A.xls file including supplementary tables. (XLS 25 kb)
DOI: 10.15468/dl.w5bz9y
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vampyroteuthidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 28 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032885-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aqs5tu
title: Occurrence Download

description: A dataset containing 17400 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cassia fistula L."
 ]
}

 The dataset includes 17400 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032884-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3597146_d8
title: Additional file 9: of Transcriptome sequencing of Mycosphaerella fijiensis during association with Musa acuminata reveals candidate pathogenicity genes

description: Table S6. Short, cysteine-rich, secreted proteins differentially expressed in infected leaf tissue versus mycelium grown in medium. SignalP 4.1 was used to predict proteins that are secreted from the cell. Proteins predicted to be short (&lt;300 amino acid residues for the mature sequence), cysteine-rich (&gt;4 cysteines), secreted, and for which the corresponding transcript is differentially expressed are shown in the table. For each protein sequence, the table indicates JGI protein and gene IDs, the location of the gene within the genome (including scaffold number, start and stop positions), the log2 fold change, the adjusted p-value for differential expression of the corresponding transcript, the length of the mature protein in amino acid residues, the number of cysteines in the mature sequence, and blastp results from a search against the NCBI non-redundant protein sequence database. Blastp results include the species where the closest homolog for the sequence was found, the description of the homolog, its NCBI accession number, the bitscore, the E-value, percent identity and similarity, notes on other species where homologs were found, and any conserved domains identified using the Conserved Domain Database. Protein sequences for which the corresponding transcripts have higher expression in infected leaf tissue are colored green, and those with higher expression in medium are colored blue. (XLS 64Â kb)
DOI: 10.6084/m9.figshare.c.3597158_d5
title: Additional file 1: Table S4. of Classification of polyhedral shapes from individual anisotropically resolved cryo-electron tomography reconstructions

description: (in separate Excel spreadsheet due to size): List of estimated polyhedral graphs for 30 micro-compartments of E. coli, as represented by their topological profiles. (XLSX 33Â kb)
DOI: 10.6084/m9.figshare.c.3597146_d12
title: Additional file 11: of Transcriptome sequencing of Mycosphaerella fijiensis during association with Musa acuminata reveals candidate pathogenicity genes

description: Table S8. Fusicoccadiene synthase homologs used for generation of phylogenetic tree. The table includes the M. fijiensis fusicoccadiene synthase and its top homologs as identified by blastp, which were used to generate a phylogenetic tree in Additional file 12: Figure S4. For each sequence, the species where it is found, its description, the bitscore, the E-value, the NCBI accession number, and percent identity with the M. fijiensis sequence are indicated. (XLS 66Â kb)
DOI: 10.15468/dl.56fmvr
title: Occurrence Download

description: A dataset containing 2204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Trifolium alexandrinum L."
 ]
}

 The dataset includes 2204 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032886-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3597371_d1
title: Additional file 1: of Population-based survey of overweight and obesity and the associated factors in peri-urban and rural Eastern Uganda

description: Distribution of body mass index by age, sex and sexes combined. Description of data: The table provides details on the distribution of different groups of body mass index stratified by sex and age groups. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3597341_d9
title: Additional file 12: Archive S2. of Structural features of DNA that determine RNA polymerase II core promoter

description: (excel-spreadsheets with profiles of ultrasound cleavage indexes T and S in the subsets of promoters which contain and does not contain TATA-tetranucleotide for all species analysed.) (RAR 331 kb)
DOI: 10.6084/m9.figshare.20116085
title: Quality degradation of industrial hemp due to infestation by <i>Halyomorpha halys</i> (Hemiptera: Pentatomidae)

description: The brown marmorated stink bug (BMSB), <i>Halyomorpha halys</i> (Hemiptera: Pentatomidae), is a highly polyphagous pest that causes severe damage to a wide range of hosts by feeding on vegetative and reproductive organs of plants, as well as on seeds. The aim of the present study was to determine if BMSB injures hemp seeds and to what the extent of this injury was, in terms of seed weight and quality. At the growth stage of the formation of female inflorescence, a BMSB individual was inserted into separate sleeve cages that were placed on the top of female industrial hemp plants. The entire procedure was repeated at two more growth stages, 20 and 40 days after the formation of the female inflorescence. According to our results, no differences were observed among infested and non-infested plants regarding seed weight and percentage of empty seeds. Conversely, infested plants displayed significantly lower mean protein content 20 days after the formation of the female inflorescence. Likewise, infested plants exhibited the lowest mean oil content 20 days after the formation of the female inflorescence.
DOI: 10.6084/m9.figshare.20278447
title: A systematic review of rodent control as part of infectious disease control programs

description: We investigated the empirical evidence supporting chemical rodent control as a public health program via a systematic search of the scientific databases PubMed and Web of Science, searching with term-strings for the concepts: “rodent control” and “zoonotic disease.” Retrieved results were screened by title and abstract to eliminate studies that (i) do not involve rodents, (ii) do not contain a zoonotic component, and (iii) involve rodents and zoonosis, but no rodent control. The remaining articles were read in full, eliminating studies that lack direct assessment of rodent control effects, with pre-/post-control measures of epidemiological outcomes. Overall, 957 entries were recovered, but only five passed all elimination criteria. Studies were concentrated in Iran, focusing on zoonotic cutaneous leishmaniasis control. The studies found significant effects on zoonotic incidence post-control, but achieved low scores in quality-of-report assessment. The effectiveness of chemical rodent control as a measure against a zoonotic disease is in its infancy, and more studies are necessary to allow an adequate assessment of the method. It is strongly recommended that future work in the subject should adopt standardized guidelines to report studies