cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.840566.v2
title: ORICD iD Growth - Year 1

description: Lists the actual number of active ORCID iDs by date and the average iDs created per day during ORCID's first year.
DOI: 10.6084/m9.figshare.27322587.v1
title: S1 File. Search Strategy for PubMed Medline

description: This research explores the factors influencing the acceptability and uptake of HIV self-testing (HIVST) among priority populations in Sub-Saharan Africa, examining demographic, socio-cultural, and logistical barriers and facilitators through a scoping review.
DOI: 10.6084/m9.figshare.24949518.v1
title: <i>Influence and Comparison of Cylindrical Engineered Defects on Detonation Waveshape in a Rubberized RDX Explosive </i>back-surface streak image data.

description: This is the back-surface streak image dataset for 0.5 to 1.5 mm cutback distances for I<i>nfluence and Comparison of Cylindrical Engineered Defects on Detonation Waveshape in a Rubberized RDX Explosive</i>
DOI: 10.6084/m9.figshare.26426404.v1
title: Pre-processed CD4 T cell (sc) train and test sets (5-fold CV)

description: Pooled gene expression probabilities and ATAC-seq tracks for human CD4 T cells, for each autosomal protein-coding gene. These can be used directly to train the accessibility-augmented sequence to expression model described at https://github.com/lapohosorsolya/accessible_seq2exp. In this dataset, ATAC-seq tracks were obtained from a human multiome PBMC dataset by 10x Genomics, and gene expression data were obtained from a human PBMC dataset with antibody-derived tags by 10x Genomics. For a detailed description of data processing, please refer to the corresponding manuscript.
DOI: 10.6084/m9.figshare.13656248.v1
title: Supplementary Material for: Quantification of Posterior Risk Related to Intrapartum FIGO 2015 Criteria for Cardiotocography in the Second Stage of Labor

description: <b><i>Introduction:</i></b> Intrapartum cardiotocography (CTG) was used for several decades to detect a stressed fetus so that delivery can be expedited to prevent birth asphyxia. The main aim of the study was to calculate the risk of neonatal acidemia (pH ≤ 7.10) according to duration of the 2nd stage of labor and occurrence of the International Federation of Gynecology and Obstetrics (FIGO) 2015 CTG classification parameters. <b><i>Materials and Methods:</i></b> This was a retrospective case-control study on 552 pregnancies receiving continuous CTG monitoring in labor and immediate hemogasanalysis at birth. Cases with umbilical artery (UA) pH ≤ 7.10 and controls with UA pH ≥ 7.10 were matched for parity and gestational age at delivery, with ratio 1:5. Logistic regression analysis, adjusted for the expected risk in the general population, was used to calculate the baseline risk of UA pH ≤ 7.10 in the absence of any CTG pathological feature and those associated with pathological CTG patterns occurring in the 2nd stage according to FIGO 2015. <b><i>Results:</i></b> Seventy-three cases and 387 controls reached 2nd stage and were included in the analysis. For those reaching 2nd stage, the mean adjusted risk of acidemia associated with nonpathological CTG was 1.6%. Stratification of risk according to duration of the 2nd stage yielded risks of neonatal acidemia of 1.23, 2.08, 5.81, and 15.22% at 30, 60, 120, and 180 min, respectively. Bradycardia &gt;10 min was associated with risk of neonatal acidemia of 9.9 and 15.8% for 2nd-stage durations of 30 and 60 min, respectively. Risks associated with 1 prolonged deceleration &gt;5 min were 6.80, 11.08, 27.0, and 51.0% at 30, 60, 120, and 180 min, respectively. Repetitive late or prolonged decelerations &gt;30 min were associated with risk of neonatal acidemia of 2.43, 4.14, 11.17, and 26.45% at 30, 60, 120, and 180 min, respectively. <b><i>Conclusion:</i></b> The risk of neonatal acidemia is directly proportional to duration of the 2nd stage, irrespective of the presence of CTG abnormalities, increasing 12-fold (1.2–15.3%) from 30 to 180 min. Occurrence of FIGO 2015 pathological CTG patterns showed a decreasing impact from bradycardia &gt;10 min to decelerations &gt;5 min, recurrent later or prolonged decelerations &gt;30 min, and nonpathological CTG.
DOI: 10.6084/m9.figshare.5107447.v1
title: A New Perspective on the Interplay between Self-Control and Cognitive Performance: Modeling Progressive Depletion Patterns

description: Dataset for investigating the interplay between ego depletion, trait self-control and their interaction on mathematical performance over the course ot testing. <br>
DOI: 10.25403/upresearchdata.21731078.v1
title: Online teaching results in township and urban schools

description: Dataset for a qualitative and comparative case study.This data is about the analysis of online teaching and learning in urban and township schools by teachers using cell phones. It outlines the responses and opinions on the matter. the software used was Atlas ti.
DOI: 10.6084/m9.figshare.1553274.v1
title: My Brain

description: T1W MPRAGE scan of my brain
DOI: 10.6084/m9.figshare.23600910.v1
title: Dataset Files

description: Set of 17 excel files of the extracted and harmonised data from CETESB registries.
Every excel file correspond to a yearly publication of the CETESB Registry for the period 2004-2020.
DOI: 10.6084/m9.figshare.5129032.v1
title: Supplementary Material for: Systemic Inflammatory Response Syndrome Following Percutaneous Nephrolithotomy: Assessment of Risk Factors and Their Impact on Patient Outcomes

description: <b><i>Objectives:</i></b> To identify perioperative risk factors for postoperative systemic inflammatory response syndrome (SIRS) and suggest possible modifications to reduce morbidity. <b><i>Material and Methods:</i></b> We prospectively analysed perioperative data such as history of pervious stone surgery, number and configuration of stones, presence of stent or nephrostomy, any previous positive urine culture, intraoperative renal pelvic urine and stone culture, aspiration of turbid urine on initial puncture, number of tracts required and clearance of stones, operative time and intraoperative hypotension and tachycardia of all patients who underwent percutaneous nephrolithotomy over a period of 15 months. <b><i>Results:</i></b> A total of 182 patients were included, average stone size was 2.8 cm, 36.2% had staghorn stones and 15.9% had an indwelling stent or nephrostomy. Despite sterile preoperative urine culture, renal pelvic urine culture (RPUC) was positive in 14.8% (27 patients) and stone culture was positive in 21.9% (40 patients). SIRS developed in 17.5% (32 patients) and septic shock in 1.09% (2 patients). On analysis younger age, positive RPUC and stone culture, longer operative time and intraoperative tachycardia correlated significantly with the development of SIRS. <b><i>Conclusion:</i></b> Intra-operative cultures are only therapy-guiding cultures during SIRS, as preoperative urine cultures seldom accurately depict bacteriological status of upper tracts and thus should be obtained in all patients.
DOI: 10.6084/m9.figshare.12759251.v1
title: Supplementary Material for: Ki-67 Index of 55% Distinguishes Two Groups of Bronchopulmonary Pure and Composite Large Cell Neuroendocrine Carcinomas with Distinct Prognosis

description: <b><i>Background:</i></b> Little information is available concerning prognostic factors for bronchopulmonary large cell neuroendocrine carcinomas (BP-LCNECs) and even less is known about combined LCNECs (Co-LCNECs). We investigated whether an integrated morphological, immunohistochemical, and molecular approach could be used for their prognostic evaluation. <b><i>Methods:</i></b> Morphological (including combined features), proliferative (mitotic count/Ki-67 index), immunohistochemical (napsin A, p40, TTF-1, CD44, OTP, SSTR2A, SSTR5, mASH1, p53, RB1, and MDM2), and genomic (<i>TP53</i>, <i>RB1</i>, <i>ATM</i>, <i>JAK2</i>, <i>KRAS</i>, and <i>STK11</i>) findings were analyzed in BP-LCNECs from 5 Italian centers, and correlated with overall survival (OS). The Ki-67 index was expressed as the percentage of positive cells in hot spots as indicated in the WHO 2019 Digestive System Tumors and, for Co-LCNECs, the Ki-67 index was evaluated only in the LCNEC component. <b><i>Results:</i></b> A total of 111 LCNECs were distinguished into 70 pure LCNECs, 35 Co-LCNECs (27 with adenocarcinoma [ADC] and 8 with squamous cell carcinoma [SqCC]), and 6 LCNECs with only napsin A immunoreactivity. The Ki-67 index cutoff at 55% evaluated in the neuroendocrine component was the most powerful predictor of OS (log-rank <i>p</i> = 0.0001) in all LCNECs; 34 cases had a Ki-67 index &lt;55% (LCNEC-A) and 77 had a Ki-67 index ≥55% (LCNEC-B). Statistically significant differences in OS (log-rank <i>p</i> = 0.0001) were also observed between pure and Co-LCNECs. A significant difference in OS was found between pure LCNECs-A and Co-LCNECs-A (<i>p</i> &lt; 0.05) but not between pure LCNECs-B and Co-LCNECs-B. Co-LCNEC-ADC and LCNEC napsin A+ cases had longer OS than pure LCNEC and Co-LCNEC-SqCC cases (log-rank <i>p</i> = 0.0001). On multivariable analysis, tumor location, pure versus combined features, and napsin A, but no single gene mutation, were significantly associated with OS after adjustment for Ki-67 index and study center (<i>p</i> &lt; 0.05). <b><i>Conclusions:</i></b> The Ki-67 proliferation index and the morphological characterization of combined features in LCNECs seem to be important tools for predicting clinical outcome in BP-LCNECs.
DOI: 10.6084/m9.figshare.14938002.v1
title: Supplementary Material for: Comparative Microbial Profiles of Caries and Black Extrinsic Tooth Stain in Primary Dentition

description: Extrinsic black tooth stain (BS) is a common oral disease associated with lower caries experience in preschool children, although the microbiotic features contributing to the low risk of caries in this group remain elusive. In this study, we aimed at identifying the dominant bacteria in dental plaque to indicate the incidence of caries in the primary dentition. Subjects were divided into 3 groups based on the clinical examination: group CF, children without pigment who had no caries lesions or restorations (<i>n</i> = 18); group CS, children who were diagnosed with severe early childhood caries (<i>n</i> = 17); and group BS, children with pigment (black extrinsic stain) without caries or restorations (<i>n</i> = 15). The total microbial genomic DNA was extracted and subjected to bacterial 16S ribosomal RNA gene sequencing using an Illumina HiSeq platform. The differential dominant bacteria were determined using Wilcoxon rank-sum testing and linear discriminant analysis effect size (LEfSe). Co-occurrence network analysis was performed using sparse correlations for compositional data, calculation and functional features were predicted using PICRUSt. Interestingly, our results showed that the relative abundance of <i>Pseudopropionibacterium</i>, <i>Actinomyces</i>, <i>Rothia</i>, and <i>Cardiobacterium</i> was from high to low and that of <i>Porphyromonas</i> was low to high in the BS, CF, and CS groups, consistent with the clinical incidence of caries in the 3 groups. Moreover, an increased level of <i>Selenomonas_3</i>, <i>Fusobacterium</i>, and <i>Leptotrichia</i> was associated with high caries prevalence. We found that the interactions among genera in the BS and CS plaque communities are less complex than those in the CF communities at the taxon level. Functional features, including cofactor and vitamin metabolism, glycan biosynthesis and metabolism, and translation, significantly increased in caries plaque samples. These bacterial competition- and commensalism-induced changes in microbiota would result in a change of their symbiotic function, finally affecting the balance of oral microflora.
DOI: 10.6084/m9.figshare.27200877.v2
title: Data and R code for "Linking individualistic growth stability of trees to the complexity of understorey layers"

description: Tree-growth stability is crucial in upholding forest ecosystem services. Despite extensive research on the correlation between tree growth and climate, the influence of forest understorey on tree-growth stability remains understudied.We surveyed forest plots and collectedtree-ring samples along two elevational gradients, ranging from 3600 to 4400 m a.s.l., in the southeastern Tibetan Plateau. An index was developed to quantifyindividualistic growth stability oftrees,and its linkage with the complexity of forest understorey structure was examined.We foundthat tree-growth stability is more pronounced in complex forest communities. In forests with higher understorey complexity, the proportion of trees experiencing growth release increased during wet years, while those with growth suppression augmented during dry years. Interestingly, a subset of trees exhibits abnormal growth increases even during the driest years, whereas another subset shows abnormal growth reductions during the wettest years.Furthermore, forests with more complex understorey structures exhibited a higher proportion of trees showcasing these two types of "anti-phase" growth statuses.Our study underscores the linkage between individualistic growth stability of trees and the complexity of understorey structures. The growth stability of the overstorey layer is conveyed at the expense of individual-level growth stability and synchrony in forests with complex understorey structures. These findings emphasize the necessity for attention to the interplay between tree growth and understorey community structures when assessing the impacts of future climate change on forest dynamics.
DOI: 10.6084/m9.figshare.25586514.v1
title: 日常生活范式数据.xlsx

description: 关于日常生活范式下检验被试是否存在不道德失忆症效应的数据
DOI: 10.6084/m9.figshare.7579790.v1
title: Serum Lipids

description: Lipids were extracted from serum samples in methanol:dicholoromethane in the presence of internal standards by Metabolon, Inc. The extracts were concentrated under nitrogen and reconstituted in 0.25 mL of 10 mM ammonium acetate dichloromethane:methanol (50:50). The extracts were transferred to inserts and placed in vials for infusion-MS analysis, performed on a Shimazdu LC with nano PEEK tubing and the Sciex Selexlon-5500 QTRAP. Samples were analyzed via both positive and negative mode electrspray. The 5500 QTRAP scan was performed in MRM mode, with more than 1,100 MRMs.
DOI: 10.6084/m9.figshare.1290932.v2
title: Detailed contacts and S. aureus dissemination

description: Daily high-resolution contact network recorded in a hospital, along with individual (nodes) attributes (S. aureus carriage and ward affectation)
DOI: 10.6084/m9.figshare.23614278.v1
title: M00338

description: This dataset contains GWAS summary file generated from sputum metagenomic data for COPD patients.
DOI: 10.6084/m9.figshare.23694339.v1
title: SILVA_138_trimmed_euka02_dada2_names.fasta

description: This is a reference library for an 18S primer pair. See here for details - https://zenodo.org/badge/latestdoi/134130931
DOI: 10.6084/m9.figshare.24447454.v2
title: The experimental code and data set

description: Underwater image processing and underwater target detection algorithm.
DOI: 10.6084/m9.figshare.25751571.v1
title: Auditor Industry 4.0 Usage Survey (Beta) (Responses).xlsx

description: This study investigates the willingness of auditors from 14 countries to adopt Industry 4.0 technologies, finding that cost, complexity, and audit history significantly influence their decisions individually but not collectively. Despite its limited sample size and geographic scope, it highlights concerns about data security and technology dependence, suggesting training and standardization as key to integrating these technologies into audit practices.
DOI: 10.6084/m9.figshare.28683011.v1
title: Supplementary Material for: Application of Mendelian randomization in cardiovascular disease: Bibliometric analysis and visualization from 2003 to 2024

description: Abstract
Introduction：
Mendelian randomization (MR) is an innovative epidemiological research method. In order to summarize and clarify the research status of MR related to cardiovascular disease (CVD), and point out the possible future development direction, we conducted a comprehensive and multi-dimensional bibliometric analysis of the literature published in this field from 2003 to 2024.
Methods:
We analyzed 1,870 articles published between 2003 and 2024 from the Web of Science Core Collection (WoSCC) using VOSviewer, R software, bibliometric online analysis tool and CiteSpace software.
Results:
CVD‐related MR research demonstrated an overall upward trend, with the United States leading in terms of publication output, followed by the United Kingdom and China. The most prolific institution in this field was the University of Bristol, and Smith GD, who had the highest number of publications (n = 103), was also affiliated with this institution. The European Heart Journal (36 publications, 5,023 citations) was the most cited journal. Related topics of frontiers will still focus on mendelian randomization, coronary heart disease, heart failure, c-reactive protein, cholesterol and body mass index.
Conclusions:
As the scope of MR studies continues to expand, especially the number of measurable features continues to increase, the need for rigorous methods and critical interpretation of MR findings becomes increasingly apparent. However, this ease of use can compromise the reliability of study results due to methodological flaws and publication bias, thereby affecting the perceived significance of the results. Nonetheless, with the emergence of large genetic datasets supporting two-sample MR, resources such as MR-Base and PhenoScanner, MR remains a powerful method for identifying potential pathogenic features in cardiometabolic and other diseases. In addition, it plays a crucial role in prioritizing drug targets for entry into clinical trials.
DOI: 10.6084/m9.figshare.12252350.v1
title: Can natural products improve skin photoprotection? - Sipplementary Material

description: <b>It summarizes some phytochemicals as well as their sources and activities.</b><b><br></b>
DOI: 10.6084/m9.figshare.28467635.v1
title: Supplementary Material for: Efficacy of cognitive behavioral therapy and acceptance- and mindfulness-based treatments in adults with bodily distress – a network-meta-analysis

description: Introduction: Many physical complaints cause long-term bodily distress. Meta-analyses show that cognitive behavioral therapy (CBT) and acceptance- and mindfulness-based treatments (AMBT) reduce somatic symptom severity, but evidence on differential efficacy is limited.
Objective: This study evaluates the efficacy of CBT and AMBT for bodily distress (e.g., somatoform disorders, functional somatic syndromes, and related disorders).
Methods: A network meta-analysis of randomized controlled trials on adults with bodily distress compared CBT and AMBT either directly or with non-specific control groups. Cohen’s d based on between-group effect sizes was aggregated using a random effects model. Primary outcome was somatic symptom severity; secondary outcomes included depression, anxiety, and perceived health status.
Results: Based on 74 studies (N = 8,277), CBT (d = -0.50, 95%CI -0.70 to -0.29; between-group effect sizes vs. wait-list) and AMBT (d = -0.55, 95%CI -1.06 to -0.23; between-group effect sizes vs. wait-list) were equally effective in reducing somatic symptoms at post-treatment. AMBT were more effective than CBT in reducing depression (d = -0.31, -0.58 to -0.04; between-group effect sizes) and anxiety (d = -0.42, -0.73 to -0.11; between-group effect sizes) post-treatment. At long-term follow-up, effects were partly maintained; AMBT remained more effective than CBT for anxiety, with no differential effects for other outcomes.
Conclusions: Both treatments showed benefits compared to various controls. Evidence suggests potential differential treatment effects, indicating some patient groups may benefit more from AMBT. Clinicians should view CBT as foundational but remain open to variations, especially for comorbid pathology.
DOI: 10.6084/m9.figshare.11980257.v1
title: Supplementary Material for: Relapsing and Progressive Complications of Severe Hypertriglyceridemia: Effective Long-Term Treatment with Double Filtration Plasmapheresis

description: <b><i>Background:</i></b> Severe hypertriglyceridemia (HTG) is associated with major complications such as acute or relapsing pancreatitis (AP) and atherosclerotic cardiovascular disease (ASCVD). Rapid elimination of triglyceride (TG)-rich lipoproteins (LP) with double filtration plasmapheresis (DFPP) without need for substitution has been found to be effective for the acute, short-term treatment of HTG-induced AP. Data on the long-term use of DFPP to prevent HTG-associated complications are scarce. <b><i>Objectives:</i></b> To evaluate the use and efficacy of regular DFPP treatment in clinical practice for preventing recurrence of HTG-associated complications in thera­py refractory patients. <b><i>Methods:</i></b> Retrospective multicenter study in patients with severe symptomatic drug and diet refractory HTG with regular DFPP treatment. Patients’ incidence of HTG-associated pancreatic or cardiovascular complications was compared before treatment and with regular DFPP treatment. <b><i>Results:</i></b> Ten patients (3 female) were identified with baseline maximal TG concentrations of 2,587–28,090 mg/dL (median 5,487 mg/dL; interquartile range [IQR] 4,340–12,636). The mean observation period was 3.9 ± 3.4 years before and 3.8 ± 3.0 years after commencement of DFPP. In 5 patients, severe HTG was related to chylomicronemia, 2 patients had familial partial lipodystrophy Dunnigan, and 1 patient had additional LP(a)-hyperlipoproteinemia. The main HTG-associated complication was recurrent AP in 8 patients, including 1 patient treated during pregnancy. Two patients presented severe progressive ASCVD. With long-term DFPP treatment, the annual rate of HTG-associa­ted pancreatic or cardiovascular complications declined from median 1.4 (IQR 0.7–2.6) to 0 (IQR 0.0–0.4; <i>p</i> &lt; 0.005). The absolute number of events was reduced by 77%. In 6 patients (60%) episodes of AP did not occur, nor was progression of ASCVD detected clinically or by routine imaging techniques. DFPP was effective in the elimination of TG-rich LP from plasma, and was safe and well-tolerated. <b><i>Conclusion:</i></b> Long-term, regular DFPP treatment resulted in stabilization of patients with severe HTG and related recurrent AP or progression of ASCVD, who were refractory to conventional dietary and drug therapy.
DOI: 10.6084/m9.figshare.28407728.v1
title: <b>Assessment of Toxic Metal Contamination in cow dung of cattle grazing in wastewater treatment plants in Limpopo Province, South Africa</b>

description: The livestock's intrusion of wastewater treatment plants (WwTPs) poses a risk of livestock consuming toxic metal-contaminated water and palatable grass. The common practice of allowing livestock to graze freely within the perimeters of wastewater treatment plants in Limpopo Province, South Africa, warranted the need to assess the levels of toxic metals in the palatable grass, sludge liquors, and cow’s faecal material to determine the potential risks of contamination.