cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.7fghdv
title: Occurrence Download

description: A dataset containing 208244 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cypripedium"
 ]
}

 The dataset includes 208244 records from 839 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006236-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k2hzt8
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Koeleria macrantha",
 "Year 1960-2010"
 ]
}

 The dataset includes 46 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006329-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18346192
title: Fisetin restrains pyroptosis of pulmonary artery smooth muscle cells to ameliorate pulmonary artery hypertension through Nrf2 signaling pathway
DOI: 10.5281/zenodo.18346191
title: Fisetin restrains pyroptosis of pulmonary artery smooth muscle cells to ameliorate pulmonary artery hypertension through Nrf2 signaling pathway
DOI: 10.15468/dl.mcnnmv
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Rhododendron saxifragoides"
 ]
}

 The dataset includes 137 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006330-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vpr8a4
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kazakhstan",
 "Geometry POLYGON((74.54416 43.32202,125.45584 43.32202,125.45584 63.67798,74.54416 63.67798,74.54416 43.32202))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Macropodium nivale"
 ]
}

 The dataset includes 35 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006331-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9u59c3
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kazakhstan",
 "Geometry POLYGON((36.81623 25.73303,113.18377 25.73303,113.18377 56.26697,36.81623 56.26697,36.81623 25.73303))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Malacocarpus crithmifolius"
 ]
}

 The dataset includes 64 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006333-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4vq46x
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((88.650537 24.110077, 88.573605 24.1045, 88.498587 24.087907, 88.427347 24.060713, 88.361653 24.023591, 88.30313200000001 23.977465, 88.25322799999999 23.923479, 88.213166 23.862971, 88.18392299999999 23.797439, 88.16620500000001 23.728502, 88.160431 23.657861, 88.166725 23.587258, 88.184911 23.518429, 88.214527 23.453065, 88.254828 23.392769, 88.304815 23.339019, 88.363253 23.293128, 88.428708 23.256219, 88.49957499999999 23.229193, 88.574125 23.212709, 88.650537 23.207169, 88.726949 23.212709, 88.80149900000001 23.229193, 88.872366 23.256219, 88.937821 23.293128, 88.99625899999999 23.339019, 89.046246 23.392769, 89.086547 23.453065, 89.116163 23.518429, 89.134349 23.587258, 89.140643 23.657861, 89.13486899999999 23.728502, 89.11715100000001 23.797439, 89.087908 23.862971, 89.04784600000001 23.923479, 88.99794199999999 23.977465, 88.939421 24.023591, 88.873727 24.060713, 88.802487 24.087907, 88.727469 24.1045, 88.650537 24.110077))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006335-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k64fte
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kazakhstan",
 "Geometry POLYGON((-1.11880 26.36132,102.11880 26.36132,102.11880 67.63868,-1.11880 67.63868,-1.11880 26.36132))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Malus niedzwetzkyana"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006334-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2s4jye
title: Occurrence Download

description: A dataset containing 26898 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-525.5388 -88.64564,251.17403 -88.64564,251.17403 79.22834,-525.5388 79.22834,-525.5388 -88.64564))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lissachatina fulica"
 ]
}

 The dataset includes 26898 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006338-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cacywe
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((88.650553 24.110153, 88.573621 24.104576, 88.49860200000001 24.087983, 88.427363 24.060789, 88.36166900000001 24.023667, 88.30314799999999 23.977541, 88.253244 23.923555, 88.21318100000001 23.863047, 88.183938 23.797515, 88.16622099999999 23.728578, 88.160447 23.657937, 88.16674 23.587334, 88.184927 23.518505, 88.21454199999999 23.453141, 88.25484400000001 23.392845, 88.30483099999999 23.339095, 88.363269 23.293204, 88.428724 23.256295, 88.499591 23.229269, 88.574141 23.212785, 88.650553 23.207245, 88.72696500000001 23.212785, 88.80151499999999 23.229269, 88.872382 23.256295, 88.937837 23.293204, 88.996275 23.339095, 89.046262 23.392845, 89.086564 23.453141, 89.116179 23.518505, 89.134366 23.587334, 89.140659 23.657937, 89.134885 23.728578, 89.11716800000001 23.797515, 89.087925 23.863047, 89.04786199999999 23.923555, 88.997958 23.977541, 88.939437 24.023667, 88.873743 24.060789, 88.802504 24.087983, 88.727485 24.104576, 88.650553 24.110153))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006340-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cbvmqv
title: Occurrence Download

description: A dataset containing 624560 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malvaceae",
 "Continent is one of (Africa, South America)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 624560 records from 1437 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006290-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13304182
title: Data from: "Inter- and intraspecific variation in performance of thrips on Chrysanthemum accessions"

description: Data from "Inter- and intraspecific variation in performance of thrips on Chrysanthemum accessions"published as

Bovio M, Voorrips RE, van Loon JJA, Vosman B & Caarls L (2025) Inter‐ and intraspecific variation in performance of thrips on Chrysanthemum accessions. Entomologia Experimentalis et Applicata 00: 1–10. https://doi.org/10.1111/eea.13575 

ABSTRACT: Populations of pest insects can differ in their responses to resistant plants, which can significantly impact the durability of plant resistance. Differential fitness of populations of thrips Frankliniella occidentalis Pergande (Thysanoptera: Thripidae) has been reported previously and other thrips species, such as Thrips tabaci Lindeman (Thysanoptera: Thripidae) and Thrips parvispinus Karny (Thysanoptera: Thripidae), may not be affected by plant resistance. In this study, we assessed the performance of F. occidentalis populations collected in the Netherlands on various Chrysanthemum accessions (Asteraceae) and characterized the genetic diversity of these populations. Analysis of the mitochondrial CO1 gene revealed five distinct haplotypes among F. occidentalis individuals from different populations, belonging to both the glasshouse and lupin strains. Significant differences in the development of thrips larvae (from the L1 to L2 stage) across five F. occidentalis populations on the five evaluated Chrysanthemum accessions were found. Two accessions, Chrysanthemum seticuspe (Maxim.) Hand.‐Mazz. PB‐MB133 and Chrysanthemum x morifolium Ramat. cv. Penny Lane, were consistently resistant, exhibiting low larval development for all F. occidentalis populations. We also examined the resistance of the Chrysanthemum accessions against T. tabaci and T. parvispinus. When comparing thrips larval performance on various Chrysanthemum accessions for the three thrips species, we found significant effects of plant accession, thrips species and their interactions on larval development. Penny Lane exhibited suppression of larval development for only F. occidentalis, whereas C. seticuspe PB‐MB133 suppressed larval development of all three thrips species tested. Interestingly, C. seticuspe PB‐MB132, previously identified as susceptible to F. occidentalis, suppressed T. parvispinus development, indicating that in C. seticuspe multiple mechanisms of resistance might be present. In conclusion, our findings demonstrate that thrips populations infesting Chrysanthemum differ in virulence, highlighting the importance of screening for resistance with multiple populations. Moreover, our study identified Chrysanthemum accessions exhibiting resistance against multiple thrips species.
DOI: 10.5281/zenodo.15281240
title: Data from: "Inter- and intraspecific variation in performance of thrips on Chrysanthemum accessions"

description: Data from "Inter- and intraspecific variation in performance of thrips on Chrysanthemum accessions"published as

Bovio M, Voorrips RE, van Loon JJA, Vosman B & Caarls L (2025) Inter‐ and intraspecific variation in performance of thrips on Chrysanthemum accessions. Entomologia Experimentalis et Applicata 00: 1–10. https://doi.org/10.1111/eea.13575 

ABSTRACT: Populations of pest insects can differ in their responses to resistant plants, which can significantly impact the durability of plant resistance. Differential fitness of populations of thrips Frankliniella occidentalis Pergande (Thysanoptera: Thripidae) has been reported previously and other thrips species, such as Thrips tabaci Lindeman (Thysanoptera: Thripidae) and Thrips parvispinus Karny (Thysanoptera: Thripidae), may not be affected by plant resistance. In this study, we assessed the performance of F. occidentalis populations collected in the Netherlands on various Chrysanthemum accessions (Asteraceae) and characterized the genetic diversity of these populations. Analysis of the mitochondrial CO1 gene revealed five distinct haplotypes among F. occidentalis individuals from different populations, belonging to both the glasshouse and lupin strains. Significant differences in the development of thrips larvae (from the L1 to L2 stage) across five F. occidentalis populations on the five evaluated Chrysanthemum accessions were found. Two accessions, Chrysanthemum seticuspe (Maxim.) Hand.‐Mazz. PB‐MB133 and Chrysanthemum x morifolium Ramat. cv. Penny Lane, were consistently resistant, exhibiting low larval development for all F. occidentalis populations. We also examined the resistance of the Chrysanthemum accessions against T. tabaci and T. parvispinus. When comparing thrips larval performance on various Chrysanthemum accessions for the three thrips species, we found significant effects of plant accession, thrips species and their interactions on larval development. Penny Lane exhibited suppression of larval development for only F. occidentalis, whereas C. seticuspe PB‐MB133 suppressed larval development of all three thrips species tested. Interestingly, C. seticuspe PB‐MB132, previously identified as susceptible to F. occidentalis, suppressed T. parvispinus development, indicating that in C. seticuspe multiple mechanisms of resistance might be present. In conclusion, our findings demonstrate that thrips populations infesting Chrysanthemum differ in virulence, highlighting the importance of screening for resistance with multiple populations. Moreover, our study identified Chrysanthemum accessions exhibiting resistance against multiple thrips species.
DOI: 10.15468/dl.ebdqj5
title: Occurrence Download

description: A dataset containing 9495 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calanus propinquus Brady, 1883"
 ]
}

 The dataset includes 9495 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001510-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.jp1mk
title: Data from: "Transcriptome sequencing of the Antarctic Colobanthus quitensis (Kunth) Bartl (Caryophillaceae)" in Genomic Resources Notes Accepted 1 February 2015 – 31 March 2015

description: This article documents the public availability of raw transcriptome
 sequence data and assembled contigs of the Antarctic plant Colobanthus
 quitensis grown in two different climatic conditions. BLAST hits are also
 provided.
description: SRX814890Sequence files of Colobanthus quitensis transcriptome grown in two different climatic conditions. Sequences were obtained using Illumina Platform Hi-Seq2000. Assembly: Paired-end reads were put through the sequencing pipeline consisting of base calling using Illumina Pipeline, trimming for quality with ERNE and from adapters with Cutadapt software. High quality reads from all libraries combined were then assembled into contigs using the de novo assembler toolbox of CLC Genomics Workbench version 6.5.1 setting default parameters but ‘word size’ to 64.Blast Hits of Colobanthus quitensis transcriptomeAll contigs were screened against Viridiplantae protein databases Nr using BLASTx (e-value&lt;10-5) (Altschul et al. 1990).blastx_C_quietensis_vs_Viridiplantae_no_Ptrichocarpa_no_Vvinifera.csv
DOI: 10.5061/dryad.f2g0f
title: Data from: Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

description: To elucidate the genetic bases of mycorrhizal lifestyle evolution, we
 sequenced new fungal genomes, including 13 ectomycorrhizal (ECM), orchid
 (ORM) and ericoid (ERM) species, and five saprotrophs, which we analyzed
 along with other fungal genomes. Ectomycorrhizal fungi have a reduced
 complement of genes encoding plant cell wall–degrading enzymes (PCWDEs),
 as compared to their ancestral wood decayers. Nevertheless, they have
 retained a unique array of PCWDEs, thus suggesting that they possess
 diverse abilities to decompose lignocellulose. Similar functional
 categories of nonorthologous genes are induced in symbiosis. Of induced
 genes, 7–38% are orphan genes, including genes that encode secreted
 effector-like proteins. Convergent evolution of the mycorrhizal habit in
 fungi occurred via the repeated evolution of a 'symbiosis
 toolkit', with reduced numbers of PCWDEs and lineage-specific suites
 of mycorrhiza-induced genes.
description: Alignments PRANK
 originalThe file contains all
 the alignments generated using the online version of PRANK alignment
 program, prior to exclusion of poorly aligned regionsAlignmentsPRANKoriginal.zipAlignments After MacCladeThis folder contains the alignment files for wood decay gene families after exclusion of poorly aligned regions using MacClade.AlignmentsAfterMacClade.zipRAxMLtreesthe folder contains the RAxML trees generated for reconciliation of wood decay gene familiesPhylogenomic Datasets and TreesIt includes the alignments and trees generated for the species phylogenyPhylogenomicDatasetsandTrees.ziplist of proteins analyzed for organismal phylogenetic analysesProteinfamilies_with_blast_characterization.txtClustering_run1973_clusterMembersGene clustering used for organismal phylogenetic analysesFilterPostProbChronogram_R8S_PR95_smoothing5
DOI: 10.5061/dryad.c3g5r
title: Data from: High-throughput genotyping for species identification and diversity assessment in germplasm collections

description: Germplasm collections provide an extremely valuable resource for breeders
 and researchers. However, misclassification of accessions by species often
 hinders the effective use of these collections. We propose that use of
 high-throughput genotyping tools can provide a fast, efficient and
 cost-effective way of confirming species in germplasm collections, as well
 as providing valuable genetic diversity data. We genotyped 180
 Brassicaceae samples sourced from the Australian Grains Genebank across
 the recently released Illumina Infinium Brassica 60K SNP array. Of these,
 76 were provided on the basis of suspected misclassification and another
 104 were sourced independently from the germplasm collection. Presence of
 the A- and C-genomes combined with principle components analysis clearly
 separated Brassica rapa, B. oleracea, B. napus, B. carinata and B. juncea
 samples into distinct species groups. Several lines were further validated
 using chromosome counts. Overall, 18% of samples (32/180) were
 misclassified on the basis of species. Within these 180 samples, 23/76
 (30%) supplied on the basis of suspected misclassification were
 misclassified, and 9/105 (9%) of the samples randomly sourced from the
 Australian Grains Genebank were misclassified. Surprisingly, several
 individuals were also found to be the product of interspecific
 hybridization events. The SNP (single nucleotide polymorphism) array
 proved effective at confirming species, and provided useful information
 related to genetic diversity. As similar genomic resources become
 available for different crops, high-throughput molecular genotyping will
 offer an efficient and cost-effective method to screen germplasm
 collections worldwide, facilitating more effective use of these valuable
 resources by breeders and researchers.
description: Brassica SNP array data
 for species identificationSNP molecular genotyping
 data and marker information for Brassica accessions sourced from the
 Australian Grains Genebank germplasm collection.Supporting
 Information3_Supplementary Table 2.xlsx
DOI: 10.5061/dryad.300fq
title: Data from: Conquering the world in leaps and bounds: hopping locomotion in toads is actually bounding

description: 1.While most frogs maximize jump distance as an escape behavior, toads
 have traded jump distance for endurance with a strategy of hopping
 repeatedly. This strategy has enabled toads to expand across the
 continents as one of the most diverse groups of anurans. Multiple studies
 have revealed physiological endurance adaptations for sustained hopping in
 toads, however, the kinematics of their sequential hopping behavior, per
 se, has not been studied. 2.We compared kinematics and forces of single
 hops and multiple hopping sequences and quantified field performance of
 hopping behaviors in free ranging toads of three species and discovered a
 novel aspect of locomotion adaptation that adds another facet to their
 exceptional terrestrial locomotor abilities. 3.We found that bouts of
 repeated hopping are actually a series of bounding strides where toads
 rotate on their hands and then land on their extended their feet and jump
 again without stopping. In addition, free-ranging toads appear to use
 bounding locomotion more frequently than single hops. Bounding in toads
 has the advantage of maintaining velocity and producing longer jump
 distances. In comparison to single hops, cyclic bounding steps reduce
 energy expenditure and appear to provide limb loading dynamics better
 suited for potential cycling of elastic energy from stride to stride than
 would be possible with repeated single hops. 4.This is the first case of
 the common use of a bounding gait outside of mammals. Bounding adds a key
 terrestrial locomotor trait to the toad's phenotype that may help
 explain their history of global expansion and the challenges to modern
 faunas as introduced toads rapidly invade new ecosystems today.
description: Toad field hopping
 behavoir for 4 samplesThese are the locomotor
 behaviors (number of successive launches) observed in the 4 samples
 studied. Rhinella marinus, Anaxyrus fowleri (from Michigan and Ohio
 populations) and Anaxyrus americanus (from Ohio).Toad field hopping behav 4
 species.xlsxCane toad raw data
 forces and 3D landmarksThese are the raw forces
 and 3d landmarks for the toad hops and bounding sequences used in this
 studyCane toad bounding
 Hildebrand gait dataThese are the foot fall
 data used to generate the hildebrand gait plot for marine toad bounding
 gaits.