cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23789447.v1
title: Genetic Analysis Script from Cognitive functioning in anxiety and depression: results from the ALSPAC cohort

description: R Script for conducting the reported observational analyses
DOI: 10.6084/m9.figshare.23789453
title: Study Data Dictionary from Cognitive functioning in anxiety and depression: results from the ALSPAC cohort

description: R Script for conducting the reported Mendelian randomization analyses
DOI: 10.6084/m9.figshare.23789453.v1
title: Study Data Dictionary from Cognitive functioning in anxiety and depression: results from the ALSPAC cohort

description: R Script for conducting the reported Mendelian randomization analyses
DOI: 10.6084/m9.figshare.23789456
title: Observational Analysis Script from Cognitive functioning in anxiety and depression: results from the ALSPAC cohort

description: List of variables, including unique ALSPAC codes, used in analyses
DOI: 10.6084/m9.figshare.23789456.v1
title: Observational Analysis Script from Cognitive functioning in anxiety and depression: results from the ALSPAC cohort

description: List of variables, including unique ALSPAC codes, used in analyses
DOI: 10.6084/m9.figshare.23265335
title: qRT-PCR data for Tm glutathione metabolic gene expression

description: Real-time quantitative PCR analysis of glutathione metabolic genes from <em>Talaromyces marneffei </em>ATCC18224 and ATCC200051 strains. We examined gene expression levels when (i) <em>T. marneffei</em> growing in different cell types and forms, including conidia, mold and yeast, and when (ii) <em>T. marneffei</em> undergoing oxidative stress (hydrogen peroxide) and xenobiotics (1 -chloro-2,4-dinitrobenzene (CDNB)) stress.
DOI: 10.6084/m9.figshare.23265335.v1
title: qRT-PCR data for Tm glutathione metabolic gene expression

description: Real-time quantitative PCR analysis of glutathione metabolic genes from <em>Talaromyces marneffei </em>ATCC18224 and ATCC200051 strains. We examined gene expression levels when (i) <em>T. marneffei</em> growing in different cell types and forms, including conidia, mold and yeast, and when (ii) <em>T. marneffei</em> undergoing oxidative stress (hydrogen peroxide) and xenobiotics (1 -chloro-2,4-dinitrobenzene (CDNB)) stress.
DOI: 10.25909/23160164.v2
title: Genetic analysis of late-maturity α-amylase in twelve wheat populations

description: Phenotype and genotype data generated in the 'Genetic analysis of late-maturity α-amylase in twelve wheat populations' study.
DOI: 10.6084/m9.figshare.23771127.v9
title: Population genomic analysis of Ellobium chinense

description: Mapped bam file and SNPs
DOI: 10.5281/zenodo.8188390
title: NPM3D dataset with instance label. Dataset used in paper "A Review of Panoptic Segmentation for Mobile Mapping Point Clouds"

description: NPM3D is a public benchmark for point cloud semantic segmentation, with 10 classes including: ground, building, pole (road sign and traffic light), bollard, trash can, barrier, pedestrian, car, natural (vegetation) and unclassified. Results are evaluated only w.r.t. 9 classes, disregarding the "unclassified" label. The data has been captured with a mapping-grade mobile laser scanning system in different cities in France. There are 4 regions designated for training, all captured in Paris and Lille; and 3 regions for testing, captured in Dijon and Ajaccio. The standard 10-class version described above has actually been derived from a more fine-grained version of the dataset by keeping only the most frequent labels. The original annotations feature 50 different semantic classes (most of which are very rare), and also individual object instance labels for the training regions. For panoptic segmentation, a new version has been generated that still uses the 10 semantic category labels listed above, but also includes instance labels. The classes ground, building and barrier are considered "stuff" and are not separated into instances. As no instance labels are available for the 3 test regions, our version for panoptic (or pure instance) segmentation only contains 4 different regions from Paris and Lille. Instead of a fixed training/test split all experiments therefore use 4-fold cross-validation.
DOI: 10.5281/zenodo.8188389
title: NPM3D dataset with instance label. Dataset used in paper "A Review of Panoptic Segmentation for Mobile Mapping Point Clouds"

description: NPM3D is a public benchmark for point cloud semantic segmentation, with 10 classes including: ground, building, pole (road sign and traffic light), bollard, trash can, barrier, pedestrian, car, natural (vegetation) and unclassified. Results are evaluated only w.r.t. 9 classes, disregarding the "unclassified" label. The data has been captured with a mapping-grade mobile laser scanning system in different cities in France. There are 4 regions designated for training, all captured in Paris and Lille; and 3 regions for testing, captured in Dijon and Ajaccio. The standard 10-class version described above has actually been derived from a more fine-grained version of the dataset by keeping only the most frequent labels. The original annotations feature 50 different semantic classes (most of which are very rare), and also individual object instance labels for the training regions. For panoptic segmentation, a new version has been generated that still uses the 10 semantic category labels listed above, but also includes instance labels. The classes ground, building and barrier are considered "stuff" and are not separated into instances. As no instance labels are available for the 3 test regions, our version for panoptic (or pure instance) segmentation only contains 4 different regions from Paris and Lille. Instead of a fixed training/test split all experiments therefore use 4-fold cross-validation.
DOI: 10.5281/zenodo.7947362
title: Raw data: Coherent control of a high-orbital hole in a semiconductor quantum dot

description: This is the raw data supporting the findings in the research article titled "<em>Coherent control of a high-orbital hole in a semiconductor quantum dot</em>". DOI: 10.1038/s41565-023-01442-y
DOI: 10.5281/zenodo.7947361
title: Raw data: Coherent control of a high-orbital hole in a semiconductor quantum dot

description: This is the raw data supporting the findings in the research article titled "<em>Coherent control of a high-orbital hole in a semiconductor quantum dot</em>". DOI: 10.1038/s41565-023-01442-y
DOI: 10.6084/m9.figshare.23585247.v1
title: Ellobium chinense Genome assembly and annotation

description: Assembled genome sequence of Ellobium chinense.
DOI: 10.15151/esrf-es-1265816547
title: ex situ samples

description: Pd deposited on glassy carbon, after H sorption
DOI: 10.6084/m9.figshare.23789013
title: CMIP6 data for JGR

description: CMIP6 data used in manuscript
DOI: 10.6084/m9.figshare.23789013.v1
title: CMIP6 data for JGR

description: CMIP6 data used in manuscript
DOI: 10.21227/jk4t-xj14
title: sEMG signal of prosthetic arm control system

description: this is dataset of sEMG. raw data include four columns, which are channel 1, channel 2, channel 3, and the reference channel. corresponding thesis proposes the integration of a dynamic time regularization algorithm to enhance gesture recognition detection accuracy and real-time system performance. The application of the dynamic time warping algorithm allows the fusion of three sEMG signals, enabling the calculation of similarity between the sample and the model. This process facilitates gesture recognition and ensures effective communication between individuals and the 3D printed prosthesis. Utilizing this algorithm, the best feature model was generated by amalgamating six types of gesture classification models. Experimental tests demonstrate that the accuracy of gesture recognition and prosthetic limb control using the temporal dynamic regularization.
DOI: 10.6084/m9.figshare.23789710
title: S11-RevBayes_analyses.R from Their fates intertwined: diversification patterns of the Asian gliding vertebrates may have been forged by dipterocarp trees

description: The repeated evolution of gliding in diverse Asian vertebrate lineages is hypothesized to have been triggered by the dominance of tall dipterocarp trees in the tropical forests of Southeast Asia. These dipterocarp forests have acted as both centres of diversification and climatic refugia for gliding vertebrates, and support most of their extant diversity. We predict similarities in the diversification patterns of dipterocarp trees and gliding vertebrates, and specifically test whether episodic diversification events such as rate shifts and/or mass extinctions were temporally congruent in these groups. We analysed diversification patterns in reconstructed timetrees of Asian dipterocarps, the most speciose gliding vertebrates from different classes (<i>Draco</i> lizards, gliding frogs and Pteromyini squirrels) and compared them with similar-sized clades of non-gliding relatives (<i>Diploderma</i> lizards, <i>Philautus</i> frogs and Callosciurinae squirrels) from Southeast Asia. We found significant declines in net-diversification rates of dipterocarps and the gliding vertebrates during the Pliocene–Pleistocene, but not in the non-gliding groups. We conclude that the homogeneity and temporal coincidence of these rate declines point to a viable ecological correlation between dipterocarps and the gliding vertebrates. Further, we suggest that while the diversification decay in dipterocarps was precipitated by post-Miocene aridification of Asia, the crises in the gliding vertebrates were induced by both events concomitantly.
DOI: 10.6084/m9.figshare.23789710.v1
title: S11-RevBayes_analyses.R from Their fates intertwined: diversification patterns of the Asian gliding vertebrates may have been forged by dipterocarp trees

description: The repeated evolution of gliding in diverse Asian vertebrate lineages is hypothesized to have been triggered by the dominance of tall dipterocarp trees in the tropical forests of Southeast Asia. These dipterocarp forests have acted as both centres of diversification and climatic refugia for gliding vertebrates, and support most of their extant diversity. We predict similarities in the diversification patterns of dipterocarp trees and gliding vertebrates, and specifically test whether episodic diversification events such as rate shifts and/or mass extinctions were temporally congruent in these groups. We analysed diversification patterns in reconstructed timetrees of Asian dipterocarps, the most speciose gliding vertebrates from different classes (<i>Draco</i> lizards, gliding frogs and Pteromyini squirrels) and compared them with similar-sized clades of non-gliding relatives (<i>Diploderma</i> lizards, <i>Philautus</i> frogs and Callosciurinae squirrels) from Southeast Asia. We found significant declines in net-diversification rates of dipterocarps and the gliding vertebrates during the Pliocene–Pleistocene, but not in the non-gliding groups. We conclude that the homogeneity and temporal coincidence of these rate declines point to a viable ecological correlation between dipterocarps and the gliding vertebrates. Further, we suggest that while the diversification decay in dipterocarps was precipitated by post-Miocene aridification of Asia, the crises in the gliding vertebrates were induced by both events concomitantly.
DOI: 10.6084/m9.figshare.23789743
title: S9-CoMET_analyses.R.R from Their fates intertwined: diversification patterns of the Asian gliding vertebrates may have been forged by dipterocarp trees

description: The repeated evolution of gliding in diverse Asian vertebrate lineages is hypothesized to have been triggered by the dominance of tall dipterocarp trees in the tropical forests of Southeast Asia. These dipterocarp forests have acted as both centres of diversification and climatic refugia for gliding vertebrates, and support most of their extant diversity. We predict similarities in the diversification patterns of dipterocarp trees and gliding vertebrates, and specifically test whether episodic diversification events such as rate shifts and/or mass extinctions were temporally congruent in these groups. We analysed diversification patterns in reconstructed timetrees of Asian dipterocarps, the most speciose gliding vertebrates from different classes (<i>Draco</i> lizards, gliding frogs and Pteromyini squirrels) and compared them with similar-sized clades of non-gliding relatives (<i>Diploderma</i> lizards, <i>Philautus</i> frogs and Callosciurinae squirrels) from Southeast Asia. We found significant declines in net-diversification rates of dipterocarps and the gliding vertebrates during the Pliocene–Pleistocene, but not in the non-gliding groups. We conclude that the homogeneity and temporal coincidence of these rate declines point to a viable ecological correlation between dipterocarps and the gliding vertebrates. Further, we suggest that while the diversification decay in dipterocarps was precipitated by post-Miocene aridification of Asia, the crises in the gliding vertebrates were induced by both events concomitantly.
DOI: 10.6084/m9.figshare.23789743.v1
title: S9-CoMET_analyses.R.R from Their fates intertwined: diversification patterns of the Asian gliding vertebrates may have been forged by dipterocarp trees

description: The repeated evolution of gliding in diverse Asian vertebrate lineages is hypothesized to have been triggered by the dominance of tall dipterocarp trees in the tropical forests of Southeast Asia. These dipterocarp forests have acted as both centres of diversification and climatic refugia for gliding vertebrates, and support most of their extant diversity. We predict similarities in the diversification patterns of dipterocarp trees and gliding vertebrates, and specifically test whether episodic diversification events such as rate shifts and/or mass extinctions were temporally congruent in these groups. We analysed diversification patterns in reconstructed timetrees of Asian dipterocarps, the most speciose gliding vertebrates from different classes (<i>Draco</i> lizards, gliding frogs and Pteromyini squirrels) and compared them with similar-sized clades of non-gliding relatives (<i>Diploderma</i> lizards, <i>Philautus</i> frogs and Callosciurinae squirrels) from Southeast Asia. We found significant declines in net-diversification rates of dipterocarps and the gliding vertebrates during the Pliocene–Pleistocene, but not in the non-gliding groups. We conclude that the homogeneity and temporal coincidence of these rate declines point to a viable ecological correlation between dipterocarps and the gliding vertebrates. Further, we suggest that while the diversification decay in dipterocarps was precipitated by post-Miocene aridification of Asia, the crises in the gliding vertebrates were induced by both events concomitantly.
DOI: 10.6084/m9.figshare.23789752
title: S12-Modeltests.R from Their fates intertwined: diversification patterns of the Asian gliding vertebrates may have been forged by dipterocarp trees

description: The repeated evolution of gliding in diverse Asian vertebrate lineages is hypothesized to have been triggered by the dominance of tall dipterocarp trees in the tropical forests of Southeast Asia. These dipterocarp forests have acted as both centres of diversification and climatic refugia for gliding vertebrates, and support most of their extant diversity. We predict similarities in the diversification patterns of dipterocarp trees and gliding vertebrates, and specifically test whether episodic diversification events such as rate shifts and/or mass extinctions were temporally congruent in these groups. We analysed diversification patterns in reconstructed timetrees of Asian dipterocarps, the most speciose gliding vertebrates from different classes (<i>Draco</i> lizards, gliding frogs and Pteromyini squirrels) and compared them with similar-sized clades of non-gliding relatives (<i>Diploderma</i> lizards, <i>Philautus</i> frogs and Callosciurinae squirrels) from Southeast Asia. We found significant declines in net-diversification rates of dipterocarps and the gliding vertebrates during the Pliocene–Pleistocene, but not in the non-gliding groups. We conclude that the homogeneity and temporal coincidence of these rate declines point to a viable ecological correlation between dipterocarps and the gliding vertebrates. Further, we suggest that while the diversification decay in dipterocarps was precipitated by post-Miocene aridification of Asia, the crises in the gliding vertebrates were induced by both events concomitantly.
DOI: 10.6084/m9.figshare.23789752.v1
title: S12-Modeltests.R from Their fates intertwined: diversification patterns of the Asian gliding vertebrates may have been forged by dipterocarp trees

description: The repeated evolution of gliding in diverse Asian vertebrate lineages is hypothesized to have been triggered by the dominance of tall dipterocarp trees in the tropical forests of Southeast Asia. These dipterocarp forests have acted as both centres of diversification and climatic refugia for gliding vertebrates, and support most of their extant diversity. We predict similarities in the diversification patterns of dipterocarp trees and gliding vertebrates, and specifically test whether episodic diversification events such as rate shifts and/or mass extinctions were temporally congruent in these groups. We analysed diversification patterns in reconstructed timetrees of Asian dipterocarps, the most speciose gliding vertebrates from different classes (<i>Draco</i> lizards, gliding frogs and Pteromyini squirrels) and compared them with similar-sized clades of non-gliding relatives (<i>Diploderma</i> lizards, <i>Philautus</i> frogs and Callosciurinae squirrels) from Southeast Asia. We found significant declines in net-diversification rates of dipterocarps and the gliding vertebrates during the Pliocene–Pleistocene, but not in the non-gliding groups. We conclude that the homogeneity and temporal coincidence of these rate declines point to a viable ecological correlation between dipterocarps and the gliding vertebrates. Further, we suggest that while the diversification decay in dipterocarps was precipitated by post-Miocene aridification of Asia, the crises in the gliding vertebrates were induced by both events concomitantly.
DOI: 10.6084/m9.figshare.23789767
title: S8-LTTplots.R.R from Their fates intertwined: diversification patterns of the Asian gliding vertebrates may have been forged by dipterocarp trees

description: The repeated evolution of gliding in diverse Asian vertebrate lineages is hypothesized to have been triggered by the dominance of tall dipterocarp trees in the tropical forests of Southeast Asia. These dipterocarp forests have acted as both centres of diversification and climatic refugia for gliding vertebrates, and support most of their extant diversity. We predict similarities in the diversification patterns of dipterocarp trees and gliding vertebrates, and specifically test whether episodic diversification events such as rate shifts and/or mass extinctions were temporally congruent in these groups. We analysed diversification patterns in reconstructed timetrees of Asian dipterocarps, the most speciose gliding vertebrates from different classes (<i>Draco</i> lizards, gliding frogs and Pteromyini squirrels) and compared them with similar-sized clades of non-gliding relatives (<i>Diploderma</i> lizards, <i>Philautus</i> frogs and Callosciurinae squirrels) from Southeast Asia. We found significant declines in net-diversification rates of dipterocarps and the gliding vertebrates during the Pliocene–Pleistocene, but not in the non-gliding groups. We conclude that the homogeneity and temporal coincidence of these rate declines point to a viable ecological correlation between dipterocarps and the gliding vertebrates. Further, we suggest that while the diversification decay in dipterocarps was precipitated by post-Miocene aridification of Asia, the crises in the gliding vertebrates were induced by both events concomitantly.
DOI: 10.6084/m9.figshare.23789767.v1
title: S8-LTTplots.R.R from Their fates intertwined: diversification patterns of the Asian gliding vertebrates may have been forged by dipterocarp trees

description: The repeated evolution of gliding in diverse Asian vertebrate lineages is hypothesized to have been triggered by the dominance of tall dipterocarp trees in the tropical forests of Southeast Asia. These dipterocarp forests have acted as both centres of diversification and climatic refugia for gliding vertebrates, and support most of their extant diversity. We predict similarities in the diversification patterns of dipterocarp trees and gliding vertebrates, and specifically test whether episodic diversification events such as rate shifts and/or mass extinctions were temporally congruent in these groups. We analysed diversification patterns in reconstructed timetrees of Asian dipterocarps, the most speciose gliding vertebrates from different classes (<i>Draco</i> lizards, gliding frogs and Pteromyini squirrels) and compared them with similar-sized clades of non-gliding relatives (<i>Diploderma</i> lizards, <i>Philautus</i> frogs and Callosciurinae squirrels) from Southeast Asia. We found significant declines in net-diversification rates of dipterocarps and the gliding vertebrates during the Pliocene–Pleistocene, but not in the non-gliding groups. We conclude that the homogeneity and temporal coincidence of these rate declines point to a viable ecological correlation between dipterocarps and the gliding vertebrates. Further, we suggest that while the diversification decay in dipterocarps was precipitated by post-Miocene aridification of Asia, the crises in the gliding vertebrates were induced by both events concomitantly.
DOI: 10.6084/m9.figshare.23789788
title: S10-treepar_analyses.R.R from Their fates intertwined: diversification patterns of the Asian gliding vertebrates may have been forged by dipterocarp trees

description: The repeated evolution of gliding in diverse Asian vertebrate lineages is hypothesized to have been triggered by the dominance of tall dipterocarp trees in the tropical forests of Southeast Asia. These dipterocarp forests have acted as both centres of diversification and climatic refugia for gliding vertebrates, and support most of their extant diversity. We predict similarities in the diversification patterns of dipterocarp trees and gliding vertebrates, and specifically test whether episodic diversification events such as rate shifts and/or mass extinctions were temporally congruent in these groups. We analysed diversification patterns in reconstructed timetrees of Asian dipterocarps, the most speciose gliding vertebrates from different classes (<i>Draco</i> lizards, gliding frogs and Pteromyini squirrels) and compared them with similar-sized clades of non-gliding relatives (<i>Diploderma</i> lizards, <i>Philautus</i> frogs and Callosciurinae squirrels) from Southeast Asia. We found significant declines in net-diversification rates of dipterocarps and the gliding vertebrates during the Pliocene–Pleistocene, but not in the non-gliding groups. We conclude that the homogeneity and temporal coincidence of these rate declines point to a viable ecological correlation between dipterocarps and the gliding vertebrates. Further, we suggest that while the diversification decay in dipterocarps was precipitated by post-Miocene aridification of Asia, the crises in the gliding vertebrates were induced by both events concomitantly.