cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/3mysh75r8r.1
title: Code and data for segmentation of granular material images using synthetic data and deep learning

description: This SyntheticSoil project is a Unity-based pipeline designed to procedurally generate and annotate realistic granular soil images from granulometric data. It enables the simulation of soil samples based on real-world particle size distributions (PSDs), their segmentation via Unity Perception, and their conversion to standard annotation formats (COCO, Pascal VOC) for training deep learning models such as Mask R-CNN.

---

## 📁 Repository Structure

```
SyntheticSoilProject/
│
├── 0_AnnotationSyntheticSoil/ # Unity project to generate and annotate soil images (top + bottom views) — version A (original project used in the article)
├── 1_solo2coco/ # Converts Unity SOLO annotations to COCO format using pysolotools
├── 2_polygon_vers_rle/ # Converts polygon annotations (x,y) to COCO RLE format
├── 3_json2xml/ # Converts COCO JSON annotations to Pascal VOC (XML)
├── 4_GrainSegNet/ # GrainSegNet model (training & inference code, checkpoints, evaluation scripts)
├── 5_SyntheticSoil/ # Unity project to generate high-resolution images without annotation — *version B (alternate codebase used in article)
├── 6_Annexes/ # Additional examples, outputs and test files
│ ├── 0_AnnotationSyntheticSoil/ # Example scene's images
│ ├── 1_Example_of_solo_data/ # Example outputs from the annotation Unity project (images, masks, SOLO JSON)
│ ├── 2_Example_of_SyntheticSoil_Images/ Example RGB images and instance masks
│ ├── 3_Test_GrainSegNet/ Example test outputs and evaluation of GrainSegNet
│ ├── Real_granular_material.JPG Example real sample photograph
│ └── Some_granulo_desired.txt Example PSD text file with desired granulometry
├── 7_BuildSyntheticSoil/ Builder version containing the full set of particle models used by the author (pre-processed prefabs)
└── README.md
```
DOI: 10.5517/ccrzlmx
title: CCDC 714600: Experimental Crystal Structure Determination

description: Related Article: Liang Li, Wei-wei Gu, Chao-guo Yan|2010|Chem.Res.Chin.Univ.|26|38|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrzlny
title: CCDC 714601: Experimental Crystal Structure Determination

description: Related Article: Liang Li, Wei-wei Gu, Chao-guo Yan|2010|Chem.Res.Chin.Univ.|26|38|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrzlpz
title: CCDC 714602: Experimental Crystal Structure Determination

description: Related Article: Liang Li, Wei-wei Gu, Chao-guo Yan|2010|Chem.Res.Chin.Univ.|26|38|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs4mq7
title: CCDC 719439: Experimental Crystal Structure Determination

description: Related Article: J.E.Saunders, A.N.Ley, P.K.B.Palomaki|2009|J.Undergrad.Chem.Res.|8|98|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctdj8z
title: CCDC 756811: Experimental Crystal Structure Determination

description: Related Article: R.M.El-Mehdawi, A.N.Eldewik, K.M.Kreddan, S.H.El-Hamruni, H.B.Hussien, P.B.Hitchcock, A.A.Shabash|2010|Jordan Journal of Chemistry|5|157|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccqndqg
title: CCDC 675016: Experimental Crystal Structure Determination

description: Related Article: M.Jiang, Y.-T.Han, Y.-T.Li, Z.-Y.Wu, C.-W.Yan|2009|Pol.J.Chem.|83|1849|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccr4x92
title: CCDC 689914: Experimental Crystal Structure Determination

description: Related Article: Jia Jun Wang, Yun Cheng Cui, Yan Ju Hung, Li Hui Liu, Ming Lv|2009|Bull.Chem.Soc.Ethiop.|23|457|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccxc77q
title: CCDC 844943: Experimental Crystal Structure Determination

description: Related Article: Jin-Kyun Lee, M.C.Gwinner, R.Berger, C.Newby, R.Zentel, R.H.Friend, H.Sirringhaus, C.K.Ober|2011|J.Am.Chem.Soc.|133|9949|doi:10.1021/ja201485p
description: Related Article: Jin-Kyun Lee, M.C.Gwinner, R.H.Friend, H.Sirringhaus, C.K.Ober|2011|Polymer Prep.|52|978|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/tv4kjwczty.1
title: Supplementary Data for: Scalp Tape-Strip RNA Sequencing Captures Disease and Treatment-Responsive Signatures in Alopecia Areata

description: This dataset accompanies the manuscript “Scalp Tape-Strip RNA Sequencing Captures Disease and Treatment-Responsive Signatures in Alopecia Areata”.
It provides the processed transcriptomic data and analysis scripts used to characterize the molecular landscape of alopecia areata (AA) through a minimally invasive tape-strip approach.

A total of 61 RNA-seq profiles were analyzed, including scalp tape-strip and bulk biopsy samples from healthy controls and patients with AA across the clinical spectrum, before and after treatment with oral baricitinib.
Gene expression was profiled using the Ion AmpliSeq™ Transcriptome Human Gene Expression Panel v2.0, aligned to the human reference genome (hg19_AmpliSeq_Transcriptome_v1.1.04042016.Designed.bed), normalized with voom, and batch-corrected with ComBat (sva package).

The dataset includes:
1) counts_batch_corrected_ComBat_bySymbol.csv — log₂-normalized, batch-corrected expression matrix (genes × samples).
2) metadata_final.csv — clinical and experimental metadata (group, severity, treatment, sample type).
3) custom_gene_sets_AA_tapestrips.gmt — curated gene sets representing key immune (IFN/JAK–STAT, Th1/Th2/Th17/Th22, cytotoxic/NK) and epithelial (follicular, keratinization, fibrosis, proteostasis) pathways.¡
4) /scripts folder — R scripts for GSVA, DEG analysis, and figure generation.

The tape-strip RNA-seq method captured the primary immune and epithelial signatures observed in lesional biopsies—highlighting strong activation of the interferon/JAK–STAT and cytotoxic T/NK pathways, suppression of follicular and keratinization programs, and molecular normalization in post-baricitinib responders.
These data support the translational use of tape-strip transcriptomics as a noninvasive biomarker and disease-monitoring tool in alopecia areata.

All files are ready to reproduce the analyses and figures described in the publication using standard R (v4.3.2) workflows.
DOI: 10.5517/ccx7w66
title: CCDC 841718: Experimental Crystal Structure Determination

description: Related Article: S.G.Carling, D.Visser, P.Day|2006|J.Mater.Chem.|16|2698|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccx7w77
title: CCDC 841719: Experimental Crystal Structure Determination

description: Related Article: S.G.Carling, D.Visser, P.Day|2006|J.Mater.Chem.|16|2698|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccxfn54
title: CCDC 847266: Experimental Crystal Structure Determination

description: Related Article: S.W.Ng|2004|Pol.J.Chem.|78|1967|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccxfn87
title: CCDC 847269: Experimental Crystal Structure Determination

description: Related Article: Liang-zhong Xu, Wei-hua Li, Guo-dong Si, Chong-yi Zhu, Kai Li, Bao-rong Hou|2005|Chem.Res.Chin.Univ.|21|444|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccsmpdg
title: CCDC 733906: Experimental Crystal Structure Determination

description: Related Article: Zhen Zhu|2010|Huaxue Gongchengshi|38|122|
description: Related Article: Jian-guo Yu, Yong-nan Zhao|2011|Chem.Res.Chin.Univ.|27|536|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/5237fvfkwb
title: Stansell et al 30 ka CESM2 data for review

description: These are the data files associated with a paper in review with Paleoceanography and Paleoclimatology.
DOI: 10.5517/ccthxw2
title: CCDC 760085: Experimental Crystal Structure Determination

description: Related Article: N.Al-ghezazi|2010|Jordan Journal of Chemistry|5|149|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccthxx3
title: CCDC 760086: Experimental Crystal Structure Determination

description: Related Article: N.Al-ghezazi|2010|Jordan Journal of Chemistry|5|149|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/5237fvfkwb.1
title: Stansell et al 30 ka CESM2 data for review

description: These are the data files associated with a paper in review with Paleoceanography and Paleoclimatology.
DOI: 10.5517/ccrw0p9
title: CCDC 711161: Experimental Crystal Structure Determination

description: Related Article: H.Jabli, Y.K.Rodi, A.Bentama, B.Garrigues, N.Saffon, F.O.Chahdi|2010|Phys.Chem.News|51|101|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrw0qb
title: CCDC 711162: Experimental Crystal Structure Determination

description: Related Article: H.Jabli, Y.K.Rodi, A.Bentama, B.Garrigues, N.Saffon, F.O.Chahdi|2010|Phys.Chem.News|51|101|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/5xr366x4nn
title: Closing in on the carbonate uranium isotopes as a paleo-redox proxy based on continuous records from Late Oligocene to Holocene island carbonates

description: Carbonate diagenesis; Redox proxy; Uranium isotopes; Vanadium-uranium sequential enrichment; South China Sea
DOI: 10.5517/ccpqmff
title: CCDC 647355: Experimental Crystal Structure Determination

description: Related Article: S.E.Harpstrite, J.L.Prior, J.Sivapackiam, S.D.Collins, N.P.Rath, V.Sharma|2010|Med.Chem.|6|191|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs0x9z
title: CCDC 715861: Experimental Crystal Structure Determination

description: Related Article: Ya-qiu Sun, Jing Wang, Lan-lan Fan, Dong-zhao Gao|2010|Chem.Res.Chin.Univ.|26|501|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccv1gq1
title: CCDC 775983: Experimental Crystal Structure Determination

description: Related Article: V.V.Gharzaryan, M.Fleck, A.M.Petrosyan|2011|Proc. of SPIE - Int.Conf.Las.Phys.2010|7998|79980F|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/5xr366x4nn.3
title: Closing in on the carbonate uranium isotopes as a paleo-redox proxy based on continuous records from Late Oligocene to Holocene island carbonates

description: Carbonate diagenesis; Redox proxy; Uranium isotopes; Vanadium-uranium sequential enrichment; South China Sea
DOI: 10.5517/ccv1gr2
title: CCDC 775984: Experimental Crystal Structure Determination

description: Related Article: V.V.Gharzaryan, M.Fleck, A.M.Petrosyan|2011|Proc. of SPIE - Int.Conf.Las.Phys.2010|7998|79980F|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccv1gs3
title: CCDC 775985: Experimental Crystal Structure Determination

description: Related Article: V.V.Gharzaryan, M.Fleck, A.M.Petrosyan|2011|Proc. of SPIE - Int.Conf.Las.Phys.2010|7998|79980F|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccv1gv5
title: CCDC 775987: Experimental Crystal Structure Determination

description: Related Article: V.V.Gharzaryan, M.Fleck, A.M.Petrosyan|2011|Proc. of SPIE - Int.Conf.Las.Phys.2010|7998|79980F|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccv1gw6
title: CCDC 775988: Experimental Crystal Structure Determination

description: Related Article: V.V.Gharzaryan, M.Fleck, A.M.Petrosyan|2011|Proc. of SPIE - Int.Conf.Las.Phys.2010|7998|79980F|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/34nnnwg6dg
title: Pyrazinamide Paper

description: Data used in PZA Paper
DOI: 10.5517/ccv1mj0
title: CCDC 776132: Experimental Crystal Structure Determination

description: Related Article: V.V.Gharzaryan, M.Fleck, A.M.Petrosyan|2011|Proc. of SPIE - Int.Conf.Las.Phys.2010|7998|79980F|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccv1ml2
title: CCDC 776134: Experimental Crystal Structure Determination

description: Related Article: V.V.Gharzaryan, M.Fleck, A.M.Petrosyan|2011|Proc. of SPIE - Int.Conf.Las.Phys.2010|7998|79980F|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccv1mm3
title: CCDC 776135: Experimental Crystal Structure Determination

description: Related Article: V.V.Gharzaryan, M.Fleck, A.M.Petrosyan|2011|Proc. of SPIE - Int.Conf.Las.Phys.2010|7998|79980F|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccv1qrb
title: CCDC 776232: Experimental Crystal Structure Determination

description: Related Article: V.V.Gharzaryan, M.Fleck, A.M.Petrosyan|2011|Proc. of SPIE - Int.Conf.Las.Phys.2010|7998|79980F|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/34nnnwg6dg.1
title: Pyrazinamide Paper

description: Data used in PZA Paper
DOI: 10.5517/ccv1qsc
title: CCDC 776233: Experimental Crystal Structure Determination

description: Related Article: V.V.Gharzaryan, M.Fleck, A.M.Petrosyan|2011|Proc. of SPIE - Int.Conf.Las.Phys.2010|7998|79980F|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccv1qtd
title: CCDC 776234: Experimental Crystal Structure Determination

description: Related Article: V.V.Gharzaryan, M.Fleck, A.M.Petrosyan|2011|Proc. of SPIE - Int.Conf.Las.Phys.2010|7998|79980F|
description: Related Article: A.M. Petrosyan, G. Giester, V.V. Ghazaryan, M. Fleck|2020|J.Mol.Struct.|1222|128825|doi:10.1016/j.molstruc.2020.128825
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccst872
title: CCDC 739264: Experimental Crystal Structure Determination

description: Related Article: I.Hernandez-Ibinarriaga, L.D.Miranda|2009|J.Mex.Chem.Soc.|53|55|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.