cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12383639
title: hygrip.h5

description: Complete data-set, that comprises the task signal (a dynamically varying force signal that is displayed visually), co-located brain signals in form of electroencephalography (EEG) and near-infrared spectroscopy (NIRS) that captures a higher spatial resolution oxygenation cortical response, the muscle activity of the grip muscles, the force generated at the grip sensor, as well as confounding sources, such as breathing and eye movement activity during a motor task. In total, 14 right-handed subjects performed a uni-manual dynamic grip force task within 25-50% of each hand's maximum voluntary contraction.
DOI: 10.6084/m9.figshare.7665068
title: Additional file 1: of Environmental filtering drives distinct continental atlases of soil archaea between dryland and wetland agricultural ecosystems

description: Figure S1. Geographical location of the sampling sites for agricultural soils across eastern China, including 117 paired, 8 maize-only, and 7 rice-only sites. Figure S2. Variation in the archaeal Îą-diversity indices [operational taxonomic unit (OTU) richness and Shannon index] between maize and rice soils. Figure S3. Relationships between archaeal Shannon index and environmental variables in each pair of maize (A and B) and rice (C and D) soils, estimated by linear least-squares regression. Figure S4. Variation in the relative abundance of archaeal phyla between maize and rice soils. Figure S5. Predicted spatial distributions of Euryachaeota and Thaumarchaeota in maize and rice soils. Figure S6. Variation in the relative abundance of archaeal orders between maize and rice soils. Figure S7. Variation in the relative abundance of archaeal genera between maize and rice soils. Figure S8. Cluster analysis of the measured environmental variables in maize and rice fields. Figure S9. Environmental contributions to the distributions of dominant archaeal taxa in maize and rice soils. Table S1. Variation explained by environmental variables in the regression models for archaeal Shannon index in maize and rice fields across eastern China. Table S2. Variation explained by environmental variables in the regression models for the relative abundance of Euryarchaeota and Thaumarchaeota in maize and rice fields. Table S4. ANOVA of environmental factors correlated with archaeal Î˛-diversity in rice soil. Table S5. List of soil dominant archaeal taxa in agricultural fields across eastern China. (ZIP 5765 kb)
DOI: 10.6084/m9.figshare.7665068.v1
title: Additional file 1: of Environmental filtering drives distinct continental atlases of soil archaea between dryland and wetland agricultural ecosystems

description: Figure S1. Geographical location of the sampling sites for agricultural soils across eastern China, including 117 paired, 8 maize-only, and 7 rice-only sites. Figure S2. Variation in the archaeal Îą-diversity indices [operational taxonomic unit (OTU) richness and Shannon index] between maize and rice soils. Figure S3. Relationships between archaeal Shannon index and environmental variables in each pair of maize (A and B) and rice (C and D) soils, estimated by linear least-squares regression. Figure S4. Variation in the relative abundance of archaeal phyla between maize and rice soils. Figure S5. Predicted spatial distributions of Euryachaeota and Thaumarchaeota in maize and rice soils. Figure S6. Variation in the relative abundance of archaeal orders between maize and rice soils. Figure S7. Variation in the relative abundance of archaeal genera between maize and rice soils. Figure S8. Cluster analysis of the measured environmental variables in maize and rice fields. Figure S9. Environmental contributions to the distributions of dominant archaeal taxa in maize and rice soils. Table S1. Variation explained by environmental variables in the regression models for archaeal Shannon index in maize and rice fields across eastern China. Table S2. Variation explained by environmental variables in the regression models for the relative abundance of Euryarchaeota and Thaumarchaeota in maize and rice fields. Table S4. ANOVA of environmental factors correlated with archaeal Î˛-diversity in rice soil. Table S5. List of soil dominant archaeal taxa in agricultural fields across eastern China. (ZIP 5765 kb)
DOI: 10.6084/m9.figshare.5043631
title: Additional file 10 of What are the environmental impacts of property rights regimes in forests, fisheries and rangelands?

description: Additional file 10. Summary of environmental data and environmental indicators used to determine environmental outcomes.
DOI: 10.5281/zenodo.10677380
title: STUDY ON THE IMPACT OF GREEN CHEMISTRY IN SECONDARY SCHOOL STUDENTS' DAILY LIFE
DOI: 10.5281/zenodo.10677381
title: STUDY ON THE IMPACT OF GREEN CHEMISTRY IN SECONDARY SCHOOL STUDENTS' DAILY LIFE
DOI: 10.6084/m9.figshare.14480879
title: Protective effect of berberine against LPS-induced endothelial cell injury via the JNK signaling pathway and autophagic mechanisms

description: The role of autophagic mechanisms in the protective effect of berberine (BBR) on lipopolysaccharide (LPS)-induced injury in the endothelial cells human umbilical vein endothelial cells (HUVECs) and human pulmonary microvascular endothelial cells (HPMECs) was investigated. Cell viability, proliferation, and apoptosis were detected by the CCK-8 assay, the EdU kit, and flow cytometry, respectively, and autophagy-related protein expression, the number of autophagic vacuoles, and LC3 double-fluorescence were examined using western blot analysis, transmission electron microscopy, and confocal microscopy, respectively. LPS resulted in a decrease in the cell viability and proliferation of HUVECs and HPMECs and an increase in the number of apoptotic cells, while BBR treatment resulted in an increase in cell viability and proliferation, as well as a decrease in cell apoptosis. Furthermore, BBR could inhibit LPS-induced autophagy, as demonstrated by its inhibitory effects on the LC3-II/LC3-I ratio and Beclin-1 levels and its promotive effect on p62 expression. Addition of the autophagy inducer rapamycin (RAPA) aggravated LPS-induced injury, while treatment with the autophagy blocker 3-methyladenine (3-MA) attenuated the injury. Further, the protective effect of BBR was inhibited by rapamycin. JNK inhibition by SP600125 inhibited LPS-induced autophagy, and BBR could not alter the LPS-induced autophagy in HUVECs and HPMECs that were pretreated with SP600125. The present data indicate that BBR attenuated LPS-induced cell apoptosis by blocking JNK-mediated autophagy in HUVECs and HPMECs. Therefore, the JNK-mediated autophagy pathway could be a potential target for the prevention and treatment of cardiovascular disease.
DOI: 10.6084/m9.figshare.14480879.v1
title: Protective effect of berberine against LPS-induced endothelial cell injury via the JNK signaling pathway and autophagic mechanisms

description: The role of autophagic mechanisms in the protective effect of berberine (BBR) on lipopolysaccharide (LPS)-induced injury in the endothelial cells human umbilical vein endothelial cells (HUVECs) and human pulmonary microvascular endothelial cells (HPMECs) was investigated. Cell viability, proliferation, and apoptosis were detected by the CCK-8 assay, the EdU kit, and flow cytometry, respectively, and autophagy-related protein expression, the number of autophagic vacuoles, and LC3 double-fluorescence were examined using western blot analysis, transmission electron microscopy, and confocal microscopy, respectively. LPS resulted in a decrease in the cell viability and proliferation of HUVECs and HPMECs and an increase in the number of apoptotic cells, while BBR treatment resulted in an increase in cell viability and proliferation, as well as a decrease in cell apoptosis. Furthermore, BBR could inhibit LPS-induced autophagy, as demonstrated by its inhibitory effects on the LC3-II/LC3-I ratio and Beclin-1 levels and its promotive effect on p62 expression. Addition of the autophagy inducer rapamycin (RAPA) aggravated LPS-induced injury, while treatment with the autophagy blocker 3-methyladenine (3-MA) attenuated the injury. Further, the protective effect of BBR was inhibited by rapamycin. JNK inhibition by SP600125 inhibited LPS-induced autophagy, and BBR could not alter the LPS-induced autophagy in HUVECs and HPMECs that were pretreated with SP600125. The present data indicate that BBR attenuated LPS-induced cell apoptosis by blocking JNK-mediated autophagy in HUVECs and HPMECs. Therefore, the JNK-mediated autophagy pathway could be a potential target for the prevention and treatment of cardiovascular disease.
DOI: 10.6084/m9.figshare.5043700
title: Additional file 3 of What are the environmental impacts of property rights regimes in forests, fisheries and rangelands?

description: Additional file 3. Description of detailed search in different databases by search terms and strategies.
DOI: 10.6084/m9.figshare.5043727
title: Additional file 5 of What are the environmental impacts of property rights regimes in forests, fisheries and rangelands?

description: Additional file 5. List of articles that did not meet additional inclusion criteria.
DOI: 10.6084/m9.figshare.5043745
title: Additional file 6 of What are the environmental impacts of property rights regimes in forests, fisheries and rangelands?

description: Additional file 6. List of articles that met the additional inclusion criteria and were selected for critical appraisal/data extraction.
DOI: 10.6084/m9.figshare.5043763
title: Additional file 7 of What are the environmental impacts of property rights regimes in forests, fisheries and rangelands?

description: Additional file 7. Critical appraisal of studies.
DOI: 10.6084/m9.figshare.5043787
title: Additional file 8 of What are the environmental impacts of property rights regimes in forests, fisheries and rangelands?

description: Additional file 8. Data extraction sheet.
DOI: 10.6084/m9.figshare.5043793
title: Additional file 9 of What are the environmental impacts of property rights regimes in forests, fisheries and rangelands?

description: Additional file 9. Articles included for the narrative synthesis.
DOI: 10.6084/m9.figshare.14480999
title: Multiple tectonomagmatic reactivation of the unexposed basement in the northern Siberian craton: from Paleoproterozoic orogeny to Phanerozoic kimberlite magmatism

description: Zircon xenocrysts from two diamond-barren kimberlite pipes (Leningrad and Ruslovaya) in the West Ukukit kimberlite field opened a ‘window’ to the buried crustal basement in the northern Siberian craton. Zircon U-Pb ages reveal a close affinity of the basement of the Khapchan belt to the Archaean Anabar province and a significant tectonomagmatic reworking in the Paleoproterozoic (~2.1–1.8 Ga) due to collision between the Anabar province and the Olenek province. The West Ukukit kimberlite field experienced multiple tectonomagmatic reactivation from ~670 to 144 Ma, which can be attributed to interaction of the deep crust with mantle-derived melts. Hf isotope composition of zircon xenocrysts reveals significant addition of juvenile material into the crust during the Paleoproterozoic orogeny in diamond-barren kimberlite fields, which is different from the reworking crust in the southern Yakutia diamondiferous kimberlite fields. Eruption of the Leningrad and Ruslovaya pipes were constrained as the Late Jurassic, much later than the well-known Late Silurian-Earth Devonian kimberlites in the West Ukukit kimberlite field. A NE-trending, &gt;2000 km long kimberlite corridor is proposed to account for a prolonged lithospheric channel for episodic eruption of kimberlites in the Siberian craton. The diamond storage in the lithosphere beneath the West Ukukit kimberlite field may have been largely reduced by the Paleoproterozoic orogeny and Phanerozoic reworking.
DOI: 10.6084/m9.figshare.14480999.v1
title: Multiple tectonomagmatic reactivation of the unexposed basement in the northern Siberian craton: from Paleoproterozoic orogeny to Phanerozoic kimberlite magmatism

description: Zircon xenocrysts from two diamond-barren kimberlite pipes (Leningrad and Ruslovaya) in the West Ukukit kimberlite field opened a ‘window’ to the buried crustal basement in the northern Siberian craton. Zircon U-Pb ages reveal a close affinity of the basement of the Khapchan belt to the Archaean Anabar province and a significant tectonomagmatic reworking in the Paleoproterozoic (~2.1–1.8 Ga) due to collision between the Anabar province and the Olenek province. The West Ukukit kimberlite field experienced multiple tectonomagmatic reactivation from ~670 to 144 Ma, which can be attributed to interaction of the deep crust with mantle-derived melts. Hf isotope composition of zircon xenocrysts reveals significant addition of juvenile material into the crust during the Paleoproterozoic orogeny in diamond-barren kimberlite fields, which is different from the reworking crust in the southern Yakutia diamondiferous kimberlite fields. Eruption of the Leningrad and Ruslovaya pipes were constrained as the Late Jurassic, much later than the well-known Late Silurian-Earth Devonian kimberlites in the West Ukukit kimberlite field. A NE-trending, &gt;2000 km long kimberlite corridor is proposed to account for a prolonged lithospheric channel for episodic eruption of kimberlites in the Siberian craton. The diamond storage in the lithosphere beneath the West Ukukit kimberlite field may have been largely reduced by the Paleoproterozoic orogeny and Phanerozoic reworking.
DOI: 10.6084/m9.figshare.14481078
title: Identification of herbivore-elicited long non-coding RNAs in rice

description: Long non-coding RNAs (lncRNAs) in plants are emerging as new players in biotic stress responses. Pathogen-associated lncRNAs have been broadly identified and functionally characterized in multiple species. However, herbivore-responsive lncRNAs in plants are poorly investigated. Our recent study revealed that lncRNAs also play roles in plant defense against herbivores in wild tobacco. Here, we identified armyworm (AW)-elicited lncRNAs in monocot rice by employing a similar approach. A total of 238 lncRNAs were found to be differentially expressed (DE) in AW-treated plants relative to control plants. The <i>cis</i> effect of these DE lncRNAs was predicted. Interestingly, one DE lncRNA was identified from the antisense transcripts of the jasmonate ZIM-domain gene <i>JAZ10</i>.
DOI: 10.6084/m9.figshare.14481078.v1
title: Identification of herbivore-elicited long non-coding RNAs in rice

description: Long non-coding RNAs (lncRNAs) in plants are emerging as new players in biotic stress responses. Pathogen-associated lncRNAs have been broadly identified and functionally characterized in multiple species. However, herbivore-responsive lncRNAs in plants are poorly investigated. Our recent study revealed that lncRNAs also play roles in plant defense against herbivores in wild tobacco. Here, we identified armyworm (AW)-elicited lncRNAs in monocot rice by employing a similar approach. A total of 238 lncRNAs were found to be differentially expressed (DE) in AW-treated plants relative to control plants. The <i>cis</i> effect of these DE lncRNAs was predicted. Interestingly, one DE lncRNA was identified from the antisense transcripts of the jasmonate ZIM-domain gene <i>JAZ10</i>.
DOI: 10.6084/m9.figshare.7665368
title: Cell cycle and cleavage events during <i>in vitro</i> cultivation of bloodstream forms of <i>Trypanosoma lewisi</i>, a zoonotic pathogen

description: <i>Trypanosoma</i> (<i>Herpetosoma</i>) <i>lewisi</i> is a globally distributed rat trypanosome, currently considered as a zoonotic pathogen; however, a detailed understanding of the morphological events occurring during the cell cycle is lacking. This study aimed to investigate the cell cycle morphology and cleavage events of <i>Trypanosoma lewisi</i> (<i>T. lewisi</i>) during <i>in vitro</i> cultivation. By establishing <i>in vitro</i> cultivation of <i>T. lewisi</i> at 37°C, various cell morphologies and stages could be observed. We have provided a quantitative analysis of the morphological events during <i>T. lewisi</i> proliferation. We confirmed a generation time of 12.14 ± 0.79 hours, which is similar to that <i>in vivo</i> (12.21 ± 0.14 hours). We also found that there are two distinct cell cycles, with a two-way transformation connection in the developmental status of this parasite, which was contrasted with the previous model of multiple division patterns seen in <i>T. lewisi</i>. We quantified the timing of cell cycle phases (G1<sub>n</sub>, 0.56 U; S<sub>n</sub>, 0.14 U; G2<sub>n</sub>, 0.16 U; M, 0.06 U; C, 0.08 U; G1<sub>k</sub>, 0.65 U; S<sub>k</sub>, 0.10 U; G2<sub>k</sub>, 0.17 U; D, 0.03 U; A, 0.05 U) and their morphological characteristics, particularly with respect to the position of kinetoplast(s) and nucleus/nuclei. Interestingly, we found that both nuclear synthesis initiation and segregation in <i>T. lewisi</i> occurred prior to kinetoplast, different to the order of replication found in <i>Trypanosoma brucei</i> and <i>Trypanosoma cruzi</i>, implicating a distinct cell cycle control mechanism in <i>T. lewisi</i>. We characterized the morphological events during the <i>T. lewisi</i> cell cycle and presented evidence to support the existence of two distinct cell cycles with two-way transformation between them. These results provide insights into the differentiation and evolution of this parasite and its related species.
DOI: 10.18112/openneuro.ds004796.v1.0.4
title: A Polish Electroencephalography, Alzheimer’s Risk-genes, Lifestyle and Neuroimaging (PEARL-Neuro) Database
DOI: 10.6084/m9.figshare.7665368.v2
title: Cell cycle and cleavage events during <i>in vitro</i> cultivation of bloodstream forms of <i>Trypanosoma lewisi</i>, a zoonotic pathogen

description: <i>Trypanosoma</i> (<i>Herpetosoma</i>) <i>lewisi</i> is a globally distributed rat trypanosome, currently considered as a zoonotic pathogen; however, a detailed understanding of the morphological events occurring during the cell cycle is lacking. This study aimed to investigate the cell cycle morphology and cleavage events of <i>Trypanosoma lewisi</i> (<i>T. lewisi</i>) during <i>in vitro</i> cultivation. By establishing <i>in vitro</i> cultivation of <i>T. lewisi</i> at 37°C, various cell morphologies and stages could be observed. We have provided a quantitative analysis of the morphological events during <i>T. lewisi</i> proliferation. We confirmed a generation time of 12.14 ± 0.79 hours, which is similar to that <i>in vivo</i> (12.21 ± 0.14 hours). We also found that there are two distinct cell cycles, with a two-way transformation connection in the developmental status of this parasite, which was contrasted with the previous model of multiple division patterns seen in <i>T. lewisi</i>. We quantified the timing of cell cycle phases (G1<sub>n</sub>, 0.56 U; S<sub>n</sub>, 0.14 U; G2<sub>n</sub>, 0.16 U; M, 0.06 U; C, 0.08 U; G1<sub>k</sub>, 0.65 U; S<sub>k</sub>, 0.10 U; G2<sub>k</sub>, 0.17 U; D, 0.03 U; A, 0.05 U) and their morphological characteristics, particularly with respect to the position of kinetoplast(s) and nucleus/nuclei. Interestingly, we found that both nuclear synthesis initiation and segregation in <i>T. lewisi</i> occurred prior to kinetoplast, different to the order of replication found in <i>Trypanosoma brucei</i> and <i>Trypanosoma cruzi</i>, implicating a distinct cell cycle control mechanism in <i>T. lewisi</i>. We characterized the morphological events during the <i>T. lewisi</i> cell cycle and presented evidence to support the existence of two distinct cell cycles with two-way transformation between them. These results provide insights into the differentiation and evolution of this parasite and its related species.
DOI: 10.6084/m9.figshare.7665368.v1
title: Cell cycle and cleavage events during <i>in vitro</i> cultivation of bloodstream forms of <i>Trypanosoma lewisi</i>, a zoonotic pathogen

description: <i>Trypanosoma</i> (<i>Herpetosoma</i>) <i>lewisi</i> is a globally distributed rat trypanosome, currently considered as a zoonotic pathogen; however, a detailed understanding of the morphological events occurring during the cell cycle is lacking. This study aimed to investigate the cell cycle morphology and cleavage events of <i>Trypanosoma lewisi</i> (<i>T. lewisi</i>) during <i>in vitro</i> cultivation. By establishing <i>in vitro</i> cultivation of <i>T. lewisi</i> at 37°C, various cell morphologies and stages could be observed. We have provided a quantitative analysis of the morphological events during <i>T. lewisi</i> proliferation. We confirmed a generation time of 12.14 ± 0.79 hours, which is similar to that <i>in vivo</i> (12.21 ± 0.14 hours). We also found that there are two distinct cell cycles, with a two-way transformation connection in the developmental status of this parasite, which was contrasted with the previous model of multiple division patterns seen in <i>T. lewisi</i>. We quantified the timing of cell cycle phases (G1<sub>n</sub>, 0.56 U; S<sub>n</sub>, 0.14 U; G2<sub>n</sub>, 0.16 U; M, 0.06 U; C, 0.08 U; G1<sub>k</sub>, 0.65 U; S<sub>k</sub>, 0.10 U; G2<sub>k</sub>, 0.17 U; D, 0.03 U; A, 0.05 U) and their morphological characteristics, particularly with respect to the position of kinetoplast(s) and nucleus/nuclei. Interestingly, we found that both nuclear synthesis initiation and segregation in <i>T. lewisi</i> occurred prior to kinetoplast, different to the order of replication found in <i>Trypanosoma brucei</i> and <i>Trypanosoma cruzi</i>, implicating a distinct cell cycle control mechanism in <i>T. lewisi</i>. We characterized the morphological events during the <i>T. lewisi</i> cell cycle and presented evidence to support the existence of two distinct cell cycles with two-way transformation between them. These results provide insights into the differentiation and evolution of this parasite and its related species.
DOI: 10.6084/m9.figshare.14481144
title: Plant’s electrophysiological information manifests the composition and nutrient transport characteristics of membrane proteins

description: Almost all life activities of plants are accompanied by electrophysiological information. Plant’s electrical parameters are considered to be the fastest response to environment. In this study, the theoretically intrinsic relationships between the clamping force and leaf resistance (R) and inductive reactance (XL) were revealed as 3-parameter exponential decay based on bioenergetics for the first time. The intrinsic resistance (IR), capacitive reactance (IXc), inductive reactance (IXL), impedance (IZ), and capacitance (IC) in plant leaves were successfully monitored. The nutrient flux per unit area (UNF), nutrient transfer rate (NTR) and nutrient transport capacity (NTC) in plants based on IR, IXc, IXL, IZ and IC were defined to reflect nutrient transport characteristics. The results indicate that IXc and IXL could be used to manifest the relative composition characteristics of cell membrane proteins, and are inversely proportional to the amount of surface and binding proteins that induce membrane Xc and XL in plant leaves, respectively. UNF, NTR or NTC exhibited good correlations with crude protein or crude ash, and accurately revealed the nutrient transport strategies of tested plants and their diversity. This study highlights that plant’s electrophysiological information could effectively manifest the composition and nutrient transport characteristics of membrane proteins in plant cells.