cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/p6sfdpjpj2
title: Jeong et al, 2022, Measurement of ciliary beating and fluid flow in the zebrafish adult telencephalon

description: In this dataset, we are providing MATLAB codes to analyse ciliary beating and cerebrospinal fluid flow in the zebrafish forebrain. Test datasets are also included. Please refer to the manuscript text Jeong et al, STAR protocol, 2022 for more details on how to use the codes and the expected outcomes.
DOI: 10.25452/figshare.plus.25551810.v2
title: Atopic Dermatitis GWAS meta-analysis summary statistics

description: Multi-ancestry GWAS meta-analysis on 12 cohorts comprising a total of 56,146 AD cases and 602,280 controls of European (EUR), Asian (ASN), African (AFR), American (AMR) and admixed ancestries (AD_GWAS_12meta_FE_hg38_final.txt.gz).Ancestry-stratified GWAS statistics were obtained by performing an analogous meta-analysis strategy considering cohorts stratified by continental populations: EUR, ASN, AFR (AD_GWAS_EUR_meta_FE_hg38_final.txt.gz, AD_GWAS_ASN_meta_FE_hg38_final.txt.gz, AD_GWAS_AFR_meta_FE_hg38_final.txt.gz).GWAS meta-analysis statistics were obtained by fixed-effect (FE) inverse variance weighted meta-analysis of the summary statistics (beta values) from each cohort using GWAMA. Genomic locations provided for human genome build 38 and hg19 (see column headers).<b>GWAS meta-analysis design:</b><b>Meta-analysis</b><b># cohorts</b><b>Ancestry</b><b># Cases</b><b># Controls</b><b># GWS loci</b><b>Lambda GC (all variants)</b>Multi-ancestry12EUR, EAS, CSA, SAS, AFR, AMR56146602280941.054968EUR-only4EUR42963408472761.089119ASN-only4ASN5014171135121.054628AFR-only2AFR70631587901.016833<b>Each file contains the following column headers:</b><br><b>CHR:</b> hg38 marker chromosome<br><b>POS:</b> hg38 marker position (bp)<br><b>REF:</b> reference allele<br><b>ALT:</b> effect allele<br><b>MARKER:</b> marker in format chr:pos:ref:alt (hg38, ex. 1:10177:A:AC)<br><b>rsID:</b> dbSNP rsID<br><b>PVAL:</b> meta-analysis p-value<br><b>BETA:</b> overall beta value for meta-analysis<br><b>SE:</b> beta standard error<br><b>Z:</b> Z-score<br><b>ALT_AF:</b> alternate/effect allele frequency<br><b>n_studies:</b> number of studies with marker present<br><b>n_samples:</b> number of samples with marker present<br><b>effects:</b> summary of effect directions ('+' - positive effect of ALT allele, '-' - negative effect of ALT allele, '0' - no effect (or non-significant) effect of ALT allele, '?' - missing data)<br><b>hg19_CHR:</b> hg19 marker chromosome<br><b>hg19_POS:</b> hg19 marker position<br><b>q_statistic: </b>Cochran's heterogeneity statistic<br><b>q_p-value</b>: Cochran's heterogeneity statistic's p-value<br><b>i2:</b> Heterogeneity index I2 by Higgins et al 2003
DOI: 10.6084/m9.figshare.1289708.v2
title: Galatanet 2 Network Graphml

description: Social network extracted from the GN2 dataset, at the Graphml format. A few nodal attributes are included in this file, unlike the Pajek version of the same network (gn2.net)
DOI: 10.6084/m9.figshare.19891759.v1
title: Dataset for Non-Markovian dynamics of a single excitation within many-body dissipative systems

description: Dataset accompanying the "Non-Markovian dynamics of a single excitation within many-body dissipative systems" publication.
DOI: 10.6084/m9.figshare.22339399.v1
title: Maternal baseline characteristics, birth, and postpartum details of 48 Merino ewes

description: Maternal baseline characteristics, birth, and postpartum details of 48 Merino ewes are found in the excel sheet.
DOI: 10.6084/m9.figshare.24183522.v1
title: Genome structure annotation of <i>Monochamus</i> <i>alternatus</i>

description: GFF file of genome annotation of <i>Monochamus</i> <i>alternatus</i>
DOI: 10.6084/m9.figshare.28836905.v1
title: Cheilinus chlorourus Genome sequencing and assembly

description: Chromosome-level genome assembly of Cheilinus chlorourus (Bloch, 1791) using PacBio and HiC technologies.
DOI: 10.6084/m9.figshare.7320842.v1
title: Additional file 14: of Annual Dialysis Data Report 2016, JSDT Renal Data Registry

description: Table S14. Incident patient distribution, by cause of death and sex, 2016. (XLSX 12Â kb)
DOI: 10.17632/sr2vppg24f
title: Spatial Distribution and Long-term Persistence of Wolbachia-infected Aedes aegypti in the Mentari Court, Malaysia

description: The mosquito Aedes aegypti is the primary vector of dengue virus to humans. Wolbachia bacteria can prevent dengue virus transmission following transfer into this species. Ae. aegypti of both sexes carrying Wolbachia strain wAlbB were released in Mentari Court, Malaysia, since October 2017 for 20 weeks. This study aims to investigate the spatial distribution of Wolbachia-carrying mosquitoes in a high-rise residential site, and examine the nature of the composition of the mosquito population across the site. There are numerous findings; firstly, Wolbachia-infected mosquitoes showed a high infection frequency four years after release. Secondly, there were some minor effects of floor and block on Wolbachia frequency. Thirdly, there was no evidence that the Aedes albopictus has in-creased across the area. While the invasion of Wolbachia will vary from location to location, this study filled a knowledge gap on the invasion of such a strain in a high-rise residential area. This study can assist in planning field release strategies and the development of models that can forecast local success.
DOI: 10.17632/zvpvp3jdbf
title: Dataset Survey and Result of Developmental Digital Literacy and Resilience Scale

description: This survey aims to get an overview of the digital literacy and Digital Resilience profile of students at the university in Indonesia, Malaysia, and Timor-Leste. This scale was developed by the researcher according to the digital literacy concept by S. Carretero, R. Vuorikari, and Y. Punie (2017) and the digital resilience concept by UK Council for Internet Safety (2019).
DOI: 10.17632/kyvcn96f48
title: Tripolar Advancement Flap

description: Supplemental Figure 1: Long term follow-up at two years.
DOI: 10.6084/m9.figshare.19335098.v5
title: <b>Wellbeing of Palliative Care Workers During Covid-19 Pandemic: Implications for Social Work Practice.sav</b>

description: This is a dataset on the wellbeing of 114 palliative care workers from India during the covid-19 pandemic. The full article associated with this dataset can be found at https://www.researchgate.net/publication/362836867_Wellbeing_of_Palliative_Care_Workers_During_Covid-19_Pandemic_Implications_for_Social_Work_Practice
DOI: 10.6084/m9.figshare.20510580.v1
title: Chemical analysis of drill holes from Haveri tailing deposit at SW Finland

description: In Finland, 418 mines have operated between 1520 and 2001, producing a large amount of material in tailings deposits. One of these operations is the Haveri copper-gold mine, which operated between 1942 and 1960, leaving 1.559 Mt of tailings. The available data were compiled based on previous research and come from two drilling campaigns carried out in the tailings dam, one in 1980 and the other in 1983. <br> The exploratory campaigns comprise 165 vertical drill holes with a total of 1114 samples. All the drill holes cover the full vertical dimension and reach the bottom of the dam. The drill hole samples were composited at a length of 1 meter. <br> Each composite presents information on its geographic coordinates (easting, northing and distance to the drill hole header), the identifier of the drill hole, and the grades of gold, cobalt, copper and iron. <br> The data is presented as CSV file with the following columns: holeid, x, y, z, Au_PPM, Co_PPM, Cu_PPM, Fe_pc, Year. It is necessary to remark that the elements Au, Co and Cu are in part per million (PPM) but Fe is measured in percentage (PC).
DOI: 10.6084/m9.figshare.22155491.v1
title: Supplementary table 1

description: <strong>Supplementary table 1. </strong>The differences between the experimental groups provided by statistical analyses are showed by different letters in the manuscript, and in more details here. Statistical analyses were performed by two-way ANOVA followed by Tukey’s t-test. * shows difference between Pioglitazone, Cold or Pioglitazone <em>plus</em> cold groups and Control group (* P&lt; 0.05, ** P&lt; 0.01 or *** P&lt; 0.001). <em>p</em> shows difference between Cold or Pioglitazone <em>plus</em> cold groups and Pioglitazone group (<em>p</em> P&lt; 0.05, <em>pp</em> P&lt; 0.01 or <em>ppp</em> P&lt; 0.001). <em>o </em>shows difference between Pioglitazone <em>plus</em> cold group and Cold group (<em>o</em> P&lt; 0.05, <em>oo</em> P&lt; 0.01 or <em>ooo</em> P&lt; 0.001).
DOI: 10.6084/m9.figshare.27247368.v1
title: synthetic_dataset.csv

description: <b>Title</b>: Privacy-Enhanced Sentiment Analysis Dataset for Mental Health Research<b>Description</b>:<br>This dataset has been compiled to support the study titled <i>"Privacy-Enhanced Sentiment Analysis in Mental Health: Federated Learning with Data Obfuscation and BERT"</i>. It contains anonymized text samples labeled with sentiment categories relevant to mental health analysis. The dataset was generated with data obfuscation techniques to protect participant privacy while preserving the key patterns needed for sentiment analysis in mental health contexts.<b>Contents</b>:<b>Text Samples</b>: Anonymized text data categorized by sentiment, designed to reflect common emotional responses pertinent to mental health assessments.<b>Sentiment Labels</b>: Labels including emotions such as happiness, sadness, anxiety, and calmness, are suitable for training and evaluating sentiment analysis models.<b>Usage</b>:<br>This dataset is intended for research purposes, especially for training machine learning models in sentiment analysis and mental health studies under privacy constraints.
DOI: 10.6084/m9.figshare.5831244.v2
title: Reversibility of JN-01 and JN-02

description: KAT-II (0.5 μg) was incubated at 37 °C for 10 min in a 50 μL reaction mixture containing 50 μM PLP, 5 mM α-ketoglutarate, 5 mM l-kynurenine in PBS, pH 7.4, with the inhibitor being studied (1–2000 μM). Equal volume of formic acid (0.8M) was added to terminate the reaction, and 50 uL of this mixture was diluted to 1 mL. Kynurenine and KYNA produced during the reaction was analyzed by HPLC using a C18 reverse-phase column, with 50% (<i>v</i>/<i>v</i>) methanol and 50% (<i>v</i>/<i>v</i>) water used as the mobile phase. Kynurenine and KYNA were detection by UV detection at a wavelength of 330 nm.
DOI: 10.11583/dtu.9420803.v2
title: Global Wind Atlas v3

description: The Global Wind Atlas version 3 data-sets contain microscale wind information at approximately 250m grid point spacing.<br>The data is created by first dynamically down-scaling ERA5 reanalysis data from 2008-2017 to 3km resolution using the WRF mesoscale model.<br>The WRF results are then generalized using DTU's generalization methodology, and then down-scaled using the WAsP model to the final 250m resolution.<br>The data in this directory consist of the entire global tiff at the full 0.0025 degree resolution on the WGS84 map projection. These data also include four sets of overview pyramids to improve the viewing of the data at low resolution.<br>Most of the data are named as follows: gwa_{variable}_{height}.tif, where variable is one of<br>* <b>wind-speed</b> - The mean wind speed at the location for the 10 year period<br><br>* <b>power-density</b> - The mean power density of the wind, which is related to the cube of the wind speed, and can provide additional information about the strength of the wind not found in the mean wind speed alone.<br>* <b>combined-Weibull-A</b> and <b>combined-Weibull-k</b> - These are the all sector combined Weibull distribution parameters for the wind speed. They can be used to get an estimate of the wind speed and power density at a site. However, caution should be applied when using these in areas with wind speeds that come from multiple directions as the shapes of those individual distributions may be quite different than this combined distribution.<br>* <b>air-density</b> - The air density is found by interpolating the air density from the CFSR reanalysis to the elevation used in the global wind atlas following the approach described in WAsP 12.<br>* <b>RIX</b> - The RIX (Ruggedness IndeX) is a measure of how complex the terrain is. It provides the percent of the area within 10 km of the position that have slopes over 30-degrees. A RIX value greater than 5 suggests that you should use caution when interpreting the results.<br>The files which do not follow the naming convention above are the <b>capacity-factor</b> layers. The capacity factor layers were calculated for 3 distinct wind turbines, with 100m hub height and rotor diameters of 112, 126, and 136m, which fall into three IEC Classes (IEC1, IEC2, and IEC3). Capacity factors can be used to calculate a preliminary estimate of the energy yield of a wind turbine (in the MW range), when placed at a location. This can be done by multiplying the rated power of the wind turbine by the capacity factor for the location (and the number of hours in a year): <br><br>AEP = P<sub>rated</sub>*CF*8760 hr/year, <br><br>where AEP is annual energy production, P<sub>rated</sub> is rated power, and CF is capacity factor.<br>
DOI: 10.17632/53c2rg9ck3
title: Effective Way to Provide Online  Education in Universities

description: To investigate the effective way of online teaching and assessment of student performance as well as the resources needed to conduct online classes.
DOI: 10.17632/7fhz672kvz
title: Daunorubicin enhances CD8+ T cell metabolic fitness to bolster antitumor immunity

description: The datasets contains Figure 1-7 and Supplementary Figure 1-7.
DOI: 10.6084/m9.figshare.11686953.v1
title: Proteome database of Bacillus pumilus strain SAFR-032

description: Spore-forming, the Gram-positive <i>Bacillus pumilus</i> is an aerobic bacterium that commonly lives in the soil. Given its resistance to a variety of environmental stressors, <i>B. pumilus</i> spores are also a known cause of food poisoning. This work sought to provide basic information on the proteome of <i>B. pumilus </i>SAFR-032 through the parsing of its UniProt proteome file with an in-house MATLAB proteome analysis software. Specifically, the resulting proteome database of the organism comprises protein name, amino acid sequence, number of residues of protein, molecular weight, and nucleotide sequence of protein. Overall, the proteome data provided should inform the design of experiments to better understand the pathogenic mechanisms of <i>B. pumilus</i> as well as factors that influence on sporulation in this hardy bacterium. <br><br>
DOI: 10.6084/m9.figshare.16546278.v1
title: Data and codes for the paper Abrupt shifts govern ecosystem productivity dynamics in global drylands

description: This file contains the data and codes used in the paper: Abrupt shifts govern ecosystem productivity dynamics in global drylands. It has two Rmarkdown files, one for achieving the database and other to perform statistical analyses described in the paper.The files FinalDB3 and MiguelResTypesMD contains the output of the first code. Rest of csv files contain data for plot directly the resulting figures of the paper.The original raw data of NDVI (termed Time series new in the codes) do not belong to the authors and therefore are not available in this public repository. However they can be requested for replication purposes at: mglberdugo@gmail.com.<br>
DOI: 10.6084/m9.figshare.28359555.v5
title: Table S1 from Proximal Partners of the Organellar N-terminal Acetyltransferase NAA60: Insights into Golgi Structure and Transmembrane Protein Topology

description: BioID Interaction Profiling: Comparing the Proxeomes of Golgi-Localized NAA60, SLC35A1, and SLC35C2
DOI: 10.6084/m9.figshare.28605863.v1
title: Summarized GWAS outcome of the discovery stage.xlsx

description: This study presents a comprehensive genome-wide association study (GWAS) on primary spontaneous pneumothorax (PSP) in a Han Chinese population, encompassing three stages: an initial discovery phase (646 cases & 1072 controls) followed by two replication phases (1577 cases & 2766 controls). The study utilizes high-throughput SNP genotyping, whole-genome imputation, and rigorous statistical analyses to identify genetic variants associated with PSP.
DOI: 10.6084/m9.figshare.845654.v1
title: Gaussian Job Archive for C18H23NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.17632/9kgrdn2yhx
title: Foretelling What Makes People Pay: Predicting the Results of Field Experiments on TV Fee Enforcement

description: Laboratory data and STATA code.
DOI: 10.17632/s7b3ymgts7
title: Data set for "Suppression of Australian savanna ants shows "the little rulers" don't rule over spider and beetle assemblages" article

description: Ant species and spider and beetle families recorded in two Australian savanna sites during a 2 year ant suppression experiment.
DOI: 10.6084/m9.figshare.12568280.v4
title: muliti-scale daily SPEI dataset over the Mainland China from 1961-2018

description: Our drought dataset serves as a unique resource with daily resolution to a variety of research communities including meteorology, geography, and natural hazard studies. The daily SPEI dataset developed is free, open and persistent publicly available from this study.
DOI: 10.6084/m9.figshare.16624978.v3
title: Data and supplementary material associated with Scheuffele et al. (2021) Thermal performance curves for aerobic scope in a tropical fish (Lates calcarifer): flexible in amplitude but not breadth. Journal of Experimental Biology.

description: Tropical barramundi were acclimated for ~4 months to cold (23℃), optimal (29℃) or warm (35℃) conditions, or to a daily temperature cycle between 23 and 35℃ (with a mean of 29℃). Measurements of aerobic scope were conducted every 3-4 weeks at three temperatures (23℃, 29℃ and 35℃), and growth rates and feed intake were monitored. <br>
DOI: 10.6084/m9.figshare.20331378.v2
title: Mutation Patterns of Resistance Genes for Macrolides, Aminoglycosides, and Rifampicin in Nontuberculous Mycobacteria Isolates from Kenya

description: Mutation patterns for rrsl, rrs, and rpoB genes in NTM
DOI: 10.6084/m9.figshare.24155052.v1
title: <b>The first high-quality chromosome-level genome assembly of the silver pomfret (</b><b><i>Pampus argenteus</i></b><b>)</b>

description: Files of chromosome assembly, genome annotation and software settings for the manuscript entitled "The first high-quality chromosome-level genome assembly of the silver pomfret (Pampus argenteus)".
DOI: 10.25422/azu.data.19216809.v1
title: Carbon Isotope Data from 1998-1999 FACE Sorghum Experiment

description: These three files contain data on carbon and carbon isotopes in air, plants and soils from the 1998-1999 Free-Air CO2 Enrichment (FACE) experiments conducted at the Maricopa Agricultural Center, Arizona. The study traced the movement of carbon from carbon dioxide in the atmosphere into plants, and then into soils. These are the data used in a paper published in <i>LAND</i> (2022), titled "Soil organic carbon isotope tracing in sorghum under ambient CO2 and Free-Air CO2 Enrichment (FACE)".<br><br><i>For inquiries regarding the contents of this dataset, please contact the Corresponding Author listed in the README.txt file. Administrative inquiries (e.g., removal requests, trouble downloading, etc.) can be directed to data-management@arizona.edu</i><br><br><br>
DOI: 10.6084/m9.figshare.21749622.v1
title: Development of a novel circular mRNA vaccine of six protein combinations against <i>Staphylococcus aureus</i>

description: <i>Staphylococcus aureus</i> is an extraordinarily versatile pathogen, which is currently the most common cause of nosocomial and community infections. Considering that increased antibiotic resistance may hasten the spread of <i>S. aureus</i>, developing an effective vaccine can possibly aid in its control. The RNA vaccine coding immunodominance epitopes from bacteria provide a potential method to induce T and B cell immune responses by translating them into cells. Furthermore, using bioinformatics to create circular RNA vaccines can ensure that the translation of the vaccine is potent and durable. In this study, 7 cytotoxic T lymphocyte (CTL) epitopes, 4 helper T lymphocyte (HTL) epitopes, and 15 B cell epitopes from 6 proteins that are closely associated with the <i>S. aureus</i> virulence and invasion and critical to natural immune responses were mapped. To verify their interactions, all epitopes were docked with the corresponding MHC alleles. The final vaccine was composed of 26 epitopes and the adjuvant β-defencin, and a disulfide bond was also introduced to improve its stability. After the prediction of structure and characteristics, the developed vaccine was docked with TLR2 and TLR4, which induce immunological responses in <i>S. aureus</i> infection. According to the molecular dynamic simulation, the vaccine might interact strongly with TLRs. Meanwhile, it performed well in immunological simulation and population coverage prediction. Finally, the vaccine was converted into a circular RNA using a series of helper sequences to aid in vaccine circulation translation. Hopefully, this proposed structure will be proven to serve a viable vaccine against <i>S. aureus</i>. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.28883117.v1
title: <b>A</b><b>lternative </b><b>P</b><b>rotein </b><b>S</b><b>ources</b><b> </b><b>And</b><b> </b><b>H</b><b>ealthy </b><b>S</b><b>keletal </b><b>M</b><b>uscle </b><b>A</b><b>ging</b><b>： A Narrative Review</b>

description: 表 S1.三种常量营养素和各种替代蛋白质来源的亮氨酸含量
DOI: 10.17632/jppc79whwx
title: Audio latency tests in the Windows platform

description: To examine the audio performance possible in the latest Microsoft Windows platform and the factors that affect the audio latency, we analyzed the timing of sound play and recording in Windows 10 and 11. We developed software tools that played/recorded sounds via audio application programming interfaces (APIs) currently supported in Windows and measured the delay for the sounds to be generated/captured after the play command was issued. Multiple tests were performed for different computers, operating system versions, sound cards, sound drivers and APIs. 

The uploaded files include the audio latency measures (latency_data.mat) and MATLAB scripts for generating figures and tables based on the measures. For a detailed explanation of the uploaded files and data structure, please refer to the readme.txt and latency_data.m files.
DOI: 10.17632/pgfk7h4367
title: A comprehensive cyberbullying dataset including social media features

description: A comprehensive dataset that includes many social media contents and their features is essential for analyzing the relationship between online bullying events and social media features.
DOI: 10.6084/m9.figshare.1024204.v3
title: Responses from a survey to determine the extent of gender bias in bioinfomatics

description: I designed a short survey to determine the extent of gender bias in bioinformatics (https://docs.google.com/forms/d/19tffT4gyTTSJtRYyKJiJwNk2xhD_-NcMcOnpYgOnI5k/viewform). This file, in tab-separated-value format, collects the main results from that survey. An analysis of this data is presented elsewhere (see links). The columns in this file preserve the original responses to the survey, with the one exception that I add an additional column to clarify the country of origin of survey participants (this was orignally a free-text field in the survey which mean that different names/spellings are used for some countries). Should there be many more responses to the form, I will update this file to allow others to interrogate the data.