cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/np452gmj7f.1
title: Dataset for the Mixed-Fleet Vehicle Routing Problem with Low Emission Zones

description: This is the dataset used for the paper “The Mixed-Fleet Vehicle Routing Problem with Low Emission Zones”.

There are two types of data: (i) MFVRP-LEZ benchmark data, (ii) Milan case study data. The MFVRP-LEZ data comprises a subset of the EVRPTW instances of Schneider et al. (2014), modified by introducing a circular LEZ identified with the coordinates of its center and a radius. This data is classified as “Small-Size” and “Large-Size”, as described in Bruglieri et al. (2025). Milan case study data is generated using the Area C in Milan city center and the real road distances. 

The details are provided in the corresponding files, MFVRP-LEZ_15.xlsx and MFVRP-LEZ_100.xlsx for the small- and large-size MFVRP-LEZ instances, respectively, and Milan Data.xlsx for the Milan case study data. 

References

Schneider, M., Stenger, A. and Goeke, D., 2014. The electric vehicle-routing problem with time windows and recharging stations. Transportation science, 48(4), pp.500-520.

Bruglieri, M., Çatay, B., Keskin, M., Mancini, S., Pisacane, O., 2025. The Mixed-Fleet Vehicle Routing Problem with Low Emission Zones. Transportation Research Part E: Logistics and Transportation Review, to appear.
DOI: 10.17632/np452gmj7f
title: Dataset for the Mixed-Fleet Vehicle Routing Problem with Low Emission Zones

description: This is the dataset used for the paper “The Mixed-Fleet Vehicle Routing Problem with Low Emission Zones”.

There are two types of data: (i) MFVRP-LEZ benchmark data, (ii) Milan case study data. The MFVRP-LEZ data comprises a subset of the EVRPTW instances of Schneider et al. (2014), modified by introducing a circular LEZ identified with the coordinates of its center and a radius. This data is classified as “Small-Size” and “Large-Size”, as described in Bruglieri et al. (2025). Milan case study data is generated using the Area C in Milan city center and the real road distances. 

The details are provided in the corresponding files, MFVRP-LEZ_15.xlsx and MFVRP-LEZ_100.xlsx for the small- and large-size MFVRP-LEZ instances, respectively, and Milan Data.xlsx for the Milan case study data. 

References

Schneider, M., Stenger, A. and Goeke, D., 2014. The electric vehicle-routing problem with time windows and recharging stations. Transportation science, 48(4), pp.500-520.

Bruglieri, M., Çatay, B., Keskin, M., Mancini, S., Pisacane, O., 2025. The Mixed-Fleet Vehicle Routing Problem with Low Emission Zones. Transportation Research Part E: Logistics and Transportation Review, to appear.
DOI: 10.17632/np452gmj7f.2
title: Dataset for the Mixed-Fleet Vehicle Routing Problem with Low Emission Zones

description: This is the dataset used for the paper “The Mixed-Fleet Vehicle Routing Problem with Low Emission Zones”.

There are two types of data: (i) MFVRP-LEZ benchmark data, (ii) Milan case study data. The MFVRP-LEZ data comprises a subset of the EVRPTW instances of Schneider et al. (2014), modified by introducing a circular LEZ identified with the coordinates of its center and a radius. This data is classified as “Small-Size” and “Large-Size”, as described in Bruglieri et al. (2025). Milan case study data is generated using the Area C in Milan city center and the real road distances. 

The details are provided in the corresponding files, MFVRP-LEZ_15.xlsx and MFVRP-LEZ_100.xlsx for the small- and large-size MFVRP-LEZ instances, respectively, and Milan Data.xlsx for the Milan case study data. 

References

Schneider, M., Stenger, A. and Goeke, D., 2014. The electric vehicle-routing problem with time windows and recharging stations. Transportation science, 48(4), pp.500-520.

Bruglieri, M., Çatay, B., Keskin, M., Mancini, S., Pisacane, O., 2025. The Mixed-Fleet Vehicle Routing Problem with Low Emission Zones. Transportation Research Part E: Logistics and Transportation Review, to appear.
DOI: 10.17632/m5wyp77v8t.1
title: Virome profile in acute febrile illness patients using metagenomic Next-Generation Sequencing: A systematic review, meta-analysis and Torque Teno Virus abundance in Northeastern Thailand

description: This study aimed to identify viruses present in AFI patients via metagenomic next-generation sequencing (mNGS) through meta-analysis. The publications were retrieved from three databases, including PubMed, Scopus and ScienceDirect. Five publications [1-5] that met our specific inclusion criteria and used mNGS to examine the virome in AFI plasma and serum specimens were eligible for this systematic review. The sample size of the studies included in this meta-analysis varied significantly, ranging from 12 to 816 cases. Of the five studies were cross-sectional studies. All three studies reported detailed information on the age distribution of AFI patients. The geographical distribution of the study population was two studies conducted in America, one in Africa and two in Europe. All studies used plasma or serum for the NGS method, with or without RT-PCR.

References
1. Yozwiak, N. L., Skewes-Cox, P., Stenglein, M. D., Balmaseda, A., Harris, E., & DeRisi, J. L. Virus identification in unknown tropical febrile illness cases using deep sequencing. PLoS neglected tropical diseases. 6(2), e1485 (2012).
2. Sardi, S. I. et al. Coinfections of Zika and Chikungunya Viruses in Bahia, Brazil, Identified by Metagenomic Next-Generation Sequencing. Journal of clinical microbiology. 54(9), 2348–2353 (2016). 
3. Williams, S. H. et al. Investigation of the Plasma Virome from Cases of Unexplained Febrile Illness in Tanzania from 2013 to 2014: a Comparative Analysis between Unbiased and VirCapSeq-VERT High-Throughput Sequencing Approaches. mSphere. 3(4), e00311-18 (2018).
4. Jerome, H. et al. Metagenomic next-generation sequencing aids the diagnosis of viral infections in febrile returning travellers. The Journal of infection. 79(4), 383–388 (2019). 
5. Cordey, S. et al. Blood virosphere in febrile Tanzanian children. Emerg Microbes Infect. 10(1), 982-993 (2021).
DOI: 10.17632/m5wyp77v8t
title: Virome profile in acute febrile illness patients using metagenomic Next-Generation Sequencing: A systematic review, meta-analysis and Torque Teno Virus abundance in Northeastern Thailand

description: This study aimed to identify viruses present in AFI patients via metagenomic next-generation sequencing (mNGS) through meta-analysis. The publications were retrieved from three databases, including PubMed, Scopus and ScienceDirect. Five publications [1-5] that met our specific inclusion criteria and used mNGS to examine the virome in AFI plasma and serum specimens were eligible for this systematic review. The sample size of the studies included in this meta-analysis varied significantly, ranging from 12 to 816 cases. Of the five studies were cross-sectional studies. All three studies reported detailed information on the age distribution of AFI patients. The geographical distribution of the study population was two studies conducted in America, one in Africa and two in Europe. All studies used plasma or serum for the NGS method, with or without RT-PCR.

References
1. Yozwiak, N. L., Skewes-Cox, P., Stenglein, M. D., Balmaseda, A., Harris, E., & DeRisi, J. L. Virus identification in unknown tropical febrile illness cases using deep sequencing. PLoS neglected tropical diseases. 6(2), e1485 (2012).
2. Sardi, S. I. et al. Coinfections of Zika and Chikungunya Viruses in Bahia, Brazil, Identified by Metagenomic Next-Generation Sequencing. Journal of clinical microbiology. 54(9), 2348–2353 (2016). 
3. Williams, S. H. et al. Investigation of the Plasma Virome from Cases of Unexplained Febrile Illness in Tanzania from 2013 to 2014: a Comparative Analysis between Unbiased and VirCapSeq-VERT High-Throughput Sequencing Approaches. mSphere. 3(4), e00311-18 (2018).
4. Jerome, H. et al. Metagenomic next-generation sequencing aids the diagnosis of viral infections in febrile returning travellers. The Journal of infection. 79(4), 383–388 (2019). 
5. Cordey, S. et al. Blood virosphere in febrile Tanzanian children. Emerg Microbes Infect. 10(1), 982-993 (2021).
DOI: 10.17632/m5wyp77v8t.2
title: Virome profile in acute febrile illness patients using metagenomic Next-Generation Sequencing: A systematic review, meta-analysis and Torque Teno Virus abundance in Northeastern Thailand

description: This study aimed to identify viruses present in AFI patients via metagenomic next-generation sequencing (mNGS) through meta-analysis. The publications were retrieved from three databases, including PubMed, Scopus and ScienceDirect. Five publications [1-5] that met our specific inclusion criteria and used mNGS to examine the virome in AFI plasma and serum specimens were eligible for this systematic review. The sample size of the studies included in this meta-analysis varied significantly, ranging from 12 to 816 cases. Of the five studies were cross-sectional studies. All three studies reported detailed information on the age distribution of AFI patients. The geographical distribution of the study population was two studies conducted in America, one in Africa and two in Europe. All studies used plasma or serum for the NGS method, with or without RT-PCR.

References
1. Yozwiak, N. L., Skewes-Cox, P., Stenglein, M. D., Balmaseda, A., Harris, E., & DeRisi, J. L. Virus identification in unknown tropical febrile illness cases using deep sequencing. PLoS neglected tropical diseases. 6(2), e1485 (2012).
2. Sardi, S. I. et al. Coinfections of Zika and Chikungunya Viruses in Bahia, Brazil, Identified by Metagenomic Next-Generation Sequencing. Journal of clinical microbiology. 54(9), 2348–2353 (2016). 
3. Williams, S. H. et al. Investigation of the Plasma Virome from Cases of Unexplained Febrile Illness in Tanzania from 2013 to 2014: a Comparative Analysis between Unbiased and VirCapSeq-VERT High-Throughput Sequencing Approaches. mSphere. 3(4), e00311-18 (2018).
4. Jerome, H. et al. Metagenomic next-generation sequencing aids the diagnosis of viral infections in febrile returning travellers. The Journal of infection. 79(4), 383–388 (2019). 
5. Cordey, S. et al. Blood virosphere in febrile Tanzanian children. Emerg Microbes Infect. 10(1), 982-993 (2021).
DOI: 10.17632/jvws8gf7vn
title: Code_Hu2025_FRSTs

description: R scripts for meta-analysis of diagnostic accuracy of 9 fall risk screening tools. This collection includes:

• Univariate random-effects meta-analysis of sensitivity and specificity 
• Diagnostic odds ratio (DOR) calculation 
• Bivariate modeling using Reitsma method 
• Forest plots and SROC curve generation 

Study: "Diagnostic Accuracy of Fall Risk Screening Tools in the Elderly: A Systematic Review with Bivariate Random-Effects Meta Analysis" 
Methods: bivariate random-effects modeling 
Software: R (version 4.3.3)
DOI: 10.17632/jvws8gf7vn.1
title: Code_Hu2025_FRSTs

description: R scripts for meta-analysis of diagnostic accuracy of 9 fall risk screening tools. This collection includes:

• Univariate random-effects meta-analysis of sensitivity and specificity 
• Diagnostic odds ratio (DOR) calculation 
• Bivariate modeling using Reitsma method 
• Forest plots and SROC curve generation 

Study: "Diagnostic Accuracy of Fall Risk Screening Tools in the Elderly: A Systematic Review with Bivariate Random-Effects Meta Analysis" 
Methods: bivariate random-effects modeling 
Software: R (version 4.3.3)
DOI: 10.15468/dl.e3uvvt
title: Occurrence Download

description: A dataset containing 213731 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trisetum flavescens",
 "HasCoordinate is true",
 "Year is greater than or equal to 1980"
 ]
}

 The dataset includes 213731 records from 1311 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007171-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18437099
title: IODP Expedition 403 Spectrophotometry

description: Interstitial water constitutents were measured by UV-VIS spectrometry using colorimetric methods (e.g., ammonium, nitrate, nitrite, phosphate, silica, and sulfide) by an Agilent CARY 100 UV-VIS spectrophotometer.
DOI: 10.5281/zenodo.18437100
title: IODP Expedition 403 Spectrophotometry

description: Interstitial water constitutents were measured by UV-VIS spectrometry using colorimetric methods (e.g., ammonium, nitrate, nitrite, phosphate, silica, and sulfide) by an Agilent CARY 100 UV-VIS spectrophotometer.
DOI: 10.5281/zenodo.18437093
title: IODP Expedition 403 Section summary

description: Report includes data for individual core sections: coring/drilling depths and recovery, database identifiers for the whole section and section halves, and number of samples taken from the section before and after splitting.
DOI: 10.5281/zenodo.18437094
title: IODP Expedition 403 Section summary

description: Report includes data for individual core sections: coring/drilling depths and recovery, database identifiers for the whole section and section halves, and number of samples taken from the section before and after splitting.
DOI: 10.15468/dl.jhupk4
title: Occurrence Download

description: A dataset containing 334 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Castela emoryi",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 334 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007293-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18437089
title: IODP Expedition 403 Sample report

description: Report includes detailed information about samples taken for testing: location/depth, type/form factor, test, request number, and database identifier.
DOI: 10.5281/zenodo.18437090
title: IODP Expedition 403 Sample report

description: Report includes detailed information about samples taken for testing: location/depth, type/form factor, test, request number, and database identifier.
DOI: 10.15468/dl.u4mupp
title: Occurrence Download

description: A dataset containing 11483 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-74.01463 6.57144,-73.84047 6.57144,-73.84047 6.68174,-74.01463 6.68174,-74.01463 6.57144))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 11483 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007294-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bw63ct
title: Occurrence Download

description: A dataset containing 2577 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Agrostis rupestris, Agrostis rupestris, Agrostis rupestris, Agrostis rupestris)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 2577 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007292-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sadbnb
title: Occurrence Download

description: A dataset containing 412 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Occurrence evidence, Human Observation)",
 "Continent is one of (Asia, Europe, Africa)",
 "Country is one of (France, Spain, Morocco, Monaco, Italy, Slovenia, Croatia, Bosnia and Herzegovina, Montenegro, Albania, Greece, Türkiye, Cyprus, Lebanon, Malta, Iraq, Iran (Islamic Republic of), Libya, Algeria, Tunisia, Syrian Arab Republic, Kuwait, Palestine, State of, Israel, Jordan)",
 "DatasetKey is one of (United States National Plant Germplasm System Collection, A global database for the distributions of crop wild relatives, The vascular plants collection (P) at the Herbarium of the Muséum national d'Histoire Naturelle (MNHN - Paris), INIA-CRF (CSIC) Plant genetic resources for agriculture and food base- collection, INIA-CRF (CSIC) Plant genetic resources for agriculture and food active collection, Flora von Deutschland (Phanerogamen))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lathyrus sativus"
 ]
}

 The dataset includes 412 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007295-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18437087
title: IODP Expedition 403 Salinity

description: Salinity was measured on interstitial water (IW) samples using an optical refractometer.
DOI: 10.5281/zenodo.18437084
title: IODP Expedition 403 Color reflectance

description: Color reflectance data were measured on section halves using an integration sphere and a UV-VIS spectrophotometer mounted on the Section Half Multisensor Logger (SHMSL). Spectral counts are recorded in the range of 380 to 700 nm, covering the visible spectrum, and binned in ~2 nm bins. Spectral data are reduced from spectra and recorded in tristimulus XYZ values, CieLAB L*a*b* values, and other units.
DOI: 10.5281/zenodo.18437088
title: IODP Expedition 403 Salinity

description: Salinity was measured on interstitial water (IW) samples using an optical refractometer.
DOI: 10.5281/zenodo.18437083
title: IODP Expedition 403 Color reflectance

description: Color reflectance data were measured on section halves using an integration sphere and a UV-VIS spectrophotometer mounted on the Section Half Multisensor Logger (SHMSL). Spectral counts are recorded in the range of 380 to 700 nm, covering the visible spectrum, and binned in ~2 nm bins. Spectral data are reduced from spectra and recorded in tristimulus XYZ values, CieLAB L*a*b* values, and other units.
DOI: 10.5281/zenodo.18437074
title: IODP Expedition 403 RGB channels (calculated from core photos)

description: Red, green, and blue pixel data were extracted from Section Half Imaging Logger (SHIL) linescan images, typically binned at 0.5 cm resolution using the central 2 cm of the image.
DOI: 10.5281/zenodo.18437073
title: IODP Expedition 403 RGB channels (calculated from core photos)

description: Red, green, and blue pixel data were extracted from Section Half Imaging Logger (SHIL) linescan images, typically binned at 0.5 cm resolution using the central 2 cm of the image.
DOI: 10.6084/m9.figshare.30359086
title: <b>Micafungin microevolution in </b><b><i>Candida auris</i></b><b> </b><b>reveals resistance development without </b><b><i>in vivo </i></b><b>fitness compromise</b>

description: In this study, we applied a microevolution approach to generate multiple micafungin resistant strains using two clinical <i>C. auris</i> isolates (AR0381 from clade II and AR0387 from clade I) that originated from patients with distinct clinical manifestations. We then examined both the impact and reproducibility of micafungin resistance development in these two isolates.
DOI: 10.6084/m9.figshare.30359086.v1
title: <b>Micafungin microevolution in </b><b><i>Candida (Candidozyma) auris</i></b><b> reveals resistance development without </b><b><i>in vivo </i></b><b>fitness compromise </b>

description: In this study, we applied a microevolution approach to generate multiple micafungin resistant strains using two clinical isolates (AR0381 from clade II and AR0387 from clade I) that originated from patients with distinct clinical manifestations. We then examined both the impact and reproducibility of micafungin resistance development in these two isolates.
DOI: 10.6084/m9.figshare.30359086.v2
title: <b>Micafungin microevolution in </b><b><i>Candida auris</i></b><b> </b><b>reveals resistance development without </b><b><i>in vivo </i></b><b>fitness compromise</b>

description: In this study, we applied a microevolution approach to generate multiple micafungin resistant strains using two clinical <i>C. auris</i> isolates (AR0381 from clade II and AR0387 from clade I) that originated from patients with distinct clinical manifestations. We then examined both the impact and reproducibility of micafungin resistance development in these two isolates.
DOI: 10.5281/zenodo.18437060
title: IODP Expedition 403 P-wave velocity caliper (section)

description: P-wave velocity data were measured on undisturbed section halves (JRSO-defined x-axis) and/or discrete cube and cylinder samples (x, y, or z-axis) using pairs of piezoelectric transducers mounted on a caliper system. Report includes P-wave velocity in x, y, and/or z-direction, caliper separation, traveltime between transucers, and first arrival picks.
DOI: 10.5281/zenodo.18437061
title: IODP Expedition 403 P-wave velocity caliper (section)

description: P-wave velocity data were measured on undisturbed section halves (JRSO-defined x-axis) and/or discrete cube and cylinder samples (x, y, or z-axis) using pairs of piezoelectric transducers mounted on a caliper system. Report includes P-wave velocity in x, y, and/or z-direction, caliper separation, traveltime between transucers, and first arrival picks.
DOI: 10.15468/dl.mqdpj8
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Nepal",
 "OccurrenceStatus is Present",
 "TaxonKey is Lantana camara",
 "Year 1986-1996"
 ]
}

 The dataset includes 24 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007296-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18437064
title: IODP Expedition 403 P-wave velocity logger (whole round)

description: P-wave velocity data were measured on whole-round sections on the Whole-Round Multisensor Logger (WRMSL) using pairs of piezoelectric transducers mounted on a caliper system. Measurements may be affected by degassing of pore fluid and microfracturing during core recovery. Report includes P-wave velocity in x-y plane and distance and traveltime between transducers.
DOI: 10.5281/zenodo.18437063
title: IODP Expedition 403 P-wave velocity logger (whole round)

description: P-wave velocity data were measured on whole-round sections on the Whole-Round Multisensor Logger (WRMSL) using pairs of piezoelectric transducers mounted on a caliper system. Measurements may be affected by degassing of pore fluid and microfracturing during core recovery. Report includes P-wave velocity in x-y plane and distance and traveltime between transducers.
DOI: 10.15468/dl.md6htv
title: Occurrence Download

description: A dataset containing 389 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eurycoma longifolia",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 389 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007297-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7pjs6w
title: Occurrence Download

description: A dataset containing 1335 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The Hummingbird Collection of the Natural History and Science Museum of the University of Porto (MHNC-UP)"
 ]
}

 The dataset includes 1335 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007299-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.