cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2b8ly5
title: CCDC 2153227: Experimental Crystal Structure Determination

description: Related Article: Magdalena Woińska, Sylwia Pawlędzio, Michał L. Chodkiewicz, Krzysztof Woźniak|2023|J.Phys.Chem.A|127|3020|doi:10.1021/acs.jpca.2c06998
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6073/pasta/b36f96bea088b218d1a890928e15c96a
title: Effects of biotic (shrimp) and abiotic (discharge) factors on the depositional environment quantified in a montane stream in Puerto Rico. (Shrimp/Algae/Can J. Fish Aquat. Sci. (1994))

description: Effects of biotic (shrimp) and abiotic (discharge) factors on the depositional environment were quantified in a montane stream in Puerto Rico. Electricity was used experimentally to exclude large (approximately &gt;1cm in length) biota without artificially increasing sedimentation as in cage enclosure/exclosure experiments in stream systems. Shrimp (&gt;1cm in length) were excluded from substrata by semicircular fence hooked up to battery-powered fence chargers which emitted continuous pulses of electricity. Unelectrified control substrata had natural high densities of atyid shrimp. Significantly greater masses of total sediment, fine and large organic particles, and algal biovolume occurred in shrimp exclusion treatments relative to controls. Shrimp exclusion treatments experienced slow and steady accumulation of sediments under base flow conditions and a large stepwise increase in sediment following a storm. No measurable sediment accrued in the presence of natural densities of shrimp under base flow conditions. Shrimp rapidly removed sediments that accrued during the storm (440-620 g*m2 dry mass-1), decreasing sediment mass in control treatments to near prestorm levels (5-13 g*m2 dry mass-1) within 30 h. Atyid shrimp can significantly affect the accumulation of organic and inorganic materials on rock substrata in stream pools between high-discharge events. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.
DOI: 10.5517/ccdc.csd.cc2b8m2b
title: CCDC 2153231: Experimental Crystal Structure Determination

description: Related Article: Magdalena Woińska, Sylwia Pawlędzio, Michał L. Chodkiewicz, Krzysztof Woźniak|2023|J.Phys.Chem.A|127|3020|doi:10.1021/acs.jpca.2c06998
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b8m3c
title: CCDC 2153232: Experimental Crystal Structure Determination

description: Related Article: Magdalena Woińska, Sylwia Pawlędzio, Michał L. Chodkiewicz, Krzysztof Woźniak|2023|J.Phys.Chem.A|127|3020|doi:10.1021/acs.jpca.2c06998
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b8m4d
title: CCDC 2153233: Experimental Crystal Structure Determination

description: Related Article: Magdalena Woińska, Sylwia Pawlędzio, Michał L. Chodkiewicz, Krzysztof Woźniak|2023|J.Phys.Chem.A|127|3020|doi:10.1021/acs.jpca.2c06998
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b8m5f
title: CCDC 2153234: Experimental Crystal Structure Determination

description: Related Article: Magdalena Woińska, Sylwia Pawlędzio, Michał L. Chodkiewicz, Krzysztof Woźniak|2023|J.Phys.Chem.A|127|3020|doi:10.1021/acs.jpca.2c06998
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b8m6g
title: CCDC 2153235: Experimental Crystal Structure Determination

description: Related Article: Magdalena Woińska, Sylwia Pawlędzio, Michał L. Chodkiewicz, Krzysztof Woźniak|2023|J.Phys.Chem.A|127|3020|doi:10.1021/acs.jpca.2c06998
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b8m7h
title: CCDC 2153236: Experimental Crystal Structure Determination

description: Related Article: Magdalena Woińska, Sylwia Pawlędzio, Michał L. Chodkiewicz, Krzysztof Woźniak|2023|J.Phys.Chem.A|127|3020|doi:10.1021/acs.jpca.2c06998
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b8m8j
title: CCDC 2153237: Experimental Crystal Structure Determination

description: Related Article: Magdalena Woińska, Sylwia Pawlędzio, Michał L. Chodkiewicz, Krzysztof Woźniak|2023|J.Phys.Chem.A|127|3020|doi:10.1021/acs.jpca.2c06998
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b8m9k
title: CCDC 2153238: Experimental Crystal Structure Determination

description: Related Article: Magdalena Woińska, Sylwia Pawlędzio, Michał L. Chodkiewicz, Krzysztof Woźniak|2023|J.Phys.Chem.A|127|3020|doi:10.1021/acs.jpca.2c06998
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b8mbl
title: CCDC 2153239: Experimental Crystal Structure Determination

description: Related Article: Magdalena Woińska, Sylwia Pawlędzio, Michał L. Chodkiewicz, Krzysztof Woźniak|2023|J.Phys.Chem.A|127|3020|doi:10.1021/acs.jpca.2c06998
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b8mcm
title: CCDC 2153240: Experimental Crystal Structure Determination

description: Related Article: Magdalena Woińska, Sylwia Pawlędzio, Michał L. Chodkiewicz, Krzysztof Woźniak|2023|J.Phys.Chem.A|127|3020|doi:10.1021/acs.jpca.2c06998
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b8mdn
title: CCDC 2153241: Experimental Crystal Structure Determination

description: Related Article: Magdalena Woińska, Sylwia Pawlędzio, Michał L. Chodkiewicz, Krzysztof Woźniak|2023|J.Phys.Chem.A|127|3020|doi:10.1021/acs.jpca.2c06998
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b8mfp
title: CCDC 2153242: Experimental Crystal Structure Determination

description: Related Article: Magdalena Woińska, Sylwia Pawlędzio, Michał L. Chodkiewicz, Krzysztof Woźniak|2023|J.Phys.Chem.A|127|3020|doi:10.1021/acs.jpca.2c06998
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b8mgq
title: CCDC 2153243: Experimental Crystal Structure Determination

description: Related Article: Magdalena Woińska, Sylwia Pawlędzio, Michał L. Chodkiewicz, Krzysztof Woźniak|2023|J.Phys.Chem.A|127|3020|doi:10.1021/acs.jpca.2c06998
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b8mhr
title: CCDC 2153244: Experimental Crystal Structure Determination

description: Related Article: Magdalena Woińska, Sylwia Pawlędzio, Michał L. Chodkiewicz, Krzysztof Woźniak|2023|J.Phys.Chem.A|127|3020|doi:10.1021/acs.jpca.2c06998
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b8mjs
title: CCDC 2153245: Experimental Crystal Structure Determination

description: Related Article: Magdalena Woińska, Sylwia Pawlędzio, Michał L. Chodkiewicz, Krzysztof Woźniak|2023|J.Phys.Chem.A|127|3020|doi:10.1021/acs.jpca.2c06998
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b8mkt
title: CCDC 2153246: Experimental Crystal Structure Determination

description: Related Article: Magdalena Woińska, Sylwia Pawlędzio, Michał L. Chodkiewicz, Krzysztof Woźniak|2023|J.Phys.Chem.A|127|3020|doi:10.1021/acs.jpca.2c06998
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b8mlv
title: CCDC 2153247: Experimental Crystal Structure Determination

description: Related Article: Magdalena Woińska, Sylwia Pawlędzio, Michał L. Chodkiewicz, Krzysztof Woźniak|2023|J.Phys.Chem.A|127|3020|doi:10.1021/acs.jpca.2c06998
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b8mmw
title: CCDC 2153248: Experimental Crystal Structure Determination

description: Related Article: Magdalena Woińska, Sylwia Pawlędzio, Michał L. Chodkiewicz, Krzysztof Woźniak|2023|J.Phys.Chem.A|127|3020|doi:10.1021/acs.jpca.2c06998
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.22000/258
title: Additional data CC_GMC study

description: Data_dwnld_F1_20180828 Folder containing the MPD projects that were downloaded on 28.8.2018 from MPD and then used for the analyses described in our manuscript. Results from pairwise comparison of each strain with C57BL/6J as reference File: DetailedResults_Including_MP_terms_Hamed_291018_hko_301118_ohne Filter.xlsx
DOI: 10.22000/152
title: data and codes for publication Tang et al 2019
DOI: 10.17630/599c89c3-b033-499d-b4bb-771805c05b28
title: Electron-Induced Modification of Self-Assembled Monolayers of Aromatic Carboxylic Acids (dataset)
DOI: 10.22000/88
title: Mouse High Fecundity Advanced Intercross Data I: Phenotypes, Pedigree and Founder Genotypes
DOI: 10.22000/81
title: Result files – Scanning the genomes of parents for imprinted loci acting in their un-genotyped progeny

description: Three files with p-values for each marker and five traits are provided. Each file contains p-values for one of three different hypotheses were tested for each trait, marker association with i) imprinting effects, with ii) transmitting abilities as sires and with iii) transmitting abilities as dams. Estimates for imprinting effects (parent-of-origin effects), transmitting abilities as sires and as dams were derived from a population analysis of salughterhouse data from Brown Swiss fattenening bulls by applying an appropriate mixed model that accounts for paternal and maternal imprinting simultanously. For more information see the detailed data description and the accompanying publication.
DOI: 10.22000/432
title: Supplemental data to publication "A Fitted Sparse-Group Lasso for Genome-Based Evaluations"
title: Simulated data for genomic evaluations in breeding populations

description: A simulation study has been conducted to analyse the association between genetic and phenotypic variation with grouped penalization approaches. The study design resembles a breeding population consisting of several half-sib families which is typical, for example, in livestock or crop. Genotypes and phenotypes have been simulated with publicly available software. Two strategies have been followed to generate genetic effects captured by markers: effects have been sampled independently (option a) or in groups (option b). The dataset includes a detailed description of the simulation design and comprises phased genotypes of parents and progeny, progeny phenotypes and marker effect sizes. The simulation has been repeated 100 times.
DOI: 10.22000/546
title: Supplemental data to publication "Evidence of Rare Misassemblies in the Bovine Reference Genome Revealed by Population Genetic Metrics" (Animal Genetics)

description: Population genetic metrics help to evaluate the genomic map coordinates of the SNP markers sited on SNP genotyping arrays. A three-step approach combining the recombination and linkage disequilibrium (LD) analyses was applied to the Illumina Bovine SNP50 genotyping array in a large pedigree of Holstein cattle consisting of 367,056 animals distributed in 1,053 half-sib families to investigate if the markers fit into the assigned physical map coordinates. A panel of 65 markers was suggested as misplacement candidates. Results of both recombination and LD analyses for each candidate marker are presented. List of marker names and coordinates within 30 refined problematic regions are supplemented. This data is associated with a publication in Animal Genetics (Qanbari et al. 2022).
DOI: 10.5281/zenodo.10122202
title: Data for: "Insights into the various mechanisms by which Shewanella spp. induce and inhibit steel corrosion"
DOI: 10.5281/zenodo.10122203
title: Data for: "Insights into the various mechanisms by which Shewanella spp. induce and inhibit steel corrosion"
DOI: 10.22000/80
title: Supplementary data to publication “An approximate Bayesian significance test for genomic evaluations” (Biom J)

description: A simulation study has been conducted to analyse the association between genetic and phenotypic variation in livestock. Following the density and distribution of single nucleotide polymorphisms (SNPs) on the Illumina BovineSNP50 chip, 52,773 SNPs were simulated on the cattle genome of 30 Morgan length. Several generations of random mating were executed in which random recombination events according to the genetic distance between SNPs and random mutation of SNP alleles were considered. In the most recent generations, 50 sires were mated to 20 dams in order to generate multiple half-sib families. The data were split into training (n=2,000) and validation/testing set (n=2,000). Twenty-three SNPs were randomly preselected to be the causative variants, and additive, dominance and epistatic effects were simulated. Two different traits were achieved by adding different residual error terms to the sum of genetic effects, such that the total genetic variation contributed either 30% or 50% to the phenotypic variation. Then, 5,227 SNPs (every 10-th SNP including the causative variants) were selected. The simulation was repeated 100 times. More details can be found in Wittenburg et al. (2011) Including non-additive genetic effects in Bayesian methods for the prediction of genetic values based on genome-wide markers. BMC Genetics 12:74, https://doi.org/10.1186/1471-2156-12-74
description: FUGATO-plus Project "BovIBI"
DOI: 10.22000/280
title: Updated results to publication “Estimation of Recombination Rate and Maternal Linkage Disequilibrium in Half-Sibs” (Fron Genet)

description: In Hampel et al. (2018, Fron Genet), we proposed an advanced method for the estimation of paternal recombination rate and maternal linkage disequilibrium between pairs of SNPs if genotypes of paternal half sibs were available. To show practical usability of the approach, empirical bovine data comprising several half-sib families have been investigated. However, the outcome of our method strongly depended on the order of SNPs. For instance, candidates of putatively misplaced SNPs were identified if recombination rate between close SNPs was unusually high. Since the bovine genome assembly has been updated to its current version ARS-UCD1.2, it was necessary to re-analyse the data. The parameter estimates as well as the input data are now jointly available from this repository. More details about the methodology can be found in Hampel et al. (2018, Fron Genet), https://doi.org/10.3389/fgene.2018.00186.
DOI: 10.22000/156
title: Supplemental data to publication "Selection signatures in four German warmblood horse breeds: tracing breeding history in the modern sport horse" (PLOS ONE)

description: The study of selection signatures helps to find genomic regions that have been under selective pressure and might host genes or variants that modulate important phenotypes. Such knowledge improves our understanding of how breeding programmes have shaped the genomes of livestock. In this study, 942 stallions were included from four, exemplarily chosen, German warmblood breeds with divergent historical and recent selection focus and different crossbreeding policies: Trakehner (N=44), Holsteiner (N=358), Hanoverian (N=319) and Oldenburger (N=221). Blood samples were collected during the health exams of the stallion preselections before licensing and were genotyped with the Illumina EquineSNP50 BeadChip. Autosomal markers were used for a multi-method search for signals of positive selection. Analyses within and across breeds were conducted by using the integrated Haplotype Score (iHS), cross-population Extended Haplotype Homozygosity (xpEHH) and Runs of Homozygosity (ROH). Oldenburger and Hanoverian showed very similar iHS signatures, but breed specificities were detected on multiple chromosomes with the xpEHH.
description: FUGATO-plus Project GENE-FL
DOI: 10.22000/358
title: Supplementary data to publication "Glucose metabolism and the somatotropic axis in dairy cows after abomasal infusion of essential fatty acids together with conjugated linoleic acid during the time of calving"

description: The study tested the effects of conjugated linoleic acid (CLA) and essential fatty acid (EFA) infusion on glucose metabolism and the somatotropic axis in dairy cows around calving. Supplementation with CLA and the combination of CLA with EFA resulted in elevated plasma glucose but decreased glucose production and stimulation of the somatotropic axis after calving. EFA treatment enhances glucose production but inhibits hepatic mRNA abundance related to gluconeogenesis.
DOI: 10.22000/361
title: Supplementary data to publication "Effects of milk replacer (MR) meal size on feed intake, growth performance, and blood metabolites and hormones of calves fed MR with or without butyrate ad libitum: A cluster-analytic approach"

description: Ad libitum MR-fed calves vary in their feeding behavior and individual feed intake during the preweaning period. This study intended to classify ad libitum MR-fed calves according to their individual voluntary MR intake using a clustering approach. Analysis allowed discriminating two groups of calves with different MR meal size (HIGH; 2.2 ± 0.11 L MR/visit; LOW; 1.8 ± 0.07 L MR/visit). Differences in feeding behaviors were linked to growth performance and metabolic changes.
DOI: 10.22000/360
title: Supplementary data to publication "Modulation of colostrum composition and fatty acid status in neonatal calves by maternal supplementation with essential fatty acids and conjugated linoleic acid starting in late lactation"

description: This study investigated the transfer of essential fatty acid (EFA) and conjugated linoleic acid (CLA) to calves, whose dams were supplemented with EFA and CLA during late gestation and early lactation. Maternal EFA and CLA supplementation increased the respective fatty acids in calf plasma to a greater extent on d 5 of life than on d 1 before colostrum feeding and affected colostrum composition but did not affect calf performance.