cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21201682.v1
title: A fragment of inherited Archaean lithospheric mantle rules the metallogeny of central Mexico

description: Mantle xenoliths from Santo Domingo, Ventura-Espíritu Santo and Durango volcanic fields (Mesa Central in Mexico) experienced low degrees of partial melting in the stability fields of garnet (⁓ 2%) and spinel peridotites (⁓ 2–4%), and interacted with hydrous alkaline melts possibly during the Basin and Range extensional tectonism since Late Oligocene. Enclosed and intergranular grains of monosulfide solid solution (mss) in Santo Domingo peridotites are residues after the extraction of 0.1–0.5 fractions of Ni-Cu-rich sulphide melt during mantle melting events. On the other hand, glo˜bular sulphides (pentlandite ± chalcopyrite) hosted in glass veinlets in the Ventura-Espíritu Santo and Durango peridotites crystallized from Ni-Cu-rich droplets of sulphide melt, immiscible in the Quaternary silicate magmas that brought the xenoliths to the surface. Rhenium-depletion model ages of these sulphide populations indicate that part of the subcontinental lithospheric mantle (SCLM) of the Oaxaquia terrane (beneath Santo Domingo and Ventura-Espíritu Santo) originated in the Archaean-Paleoproterozoic as the southernmost extension of the Laurentia craton, and was assembled with the Central terrane (beneath Durango) during the Grenville orogeny (⁓ 1.0 Ga). Early Palaeozoic (⁓ 500 Ma) model ages common to sulphides from the peridotite xenoliths of the three volcanic fields suggest that the Oaxaquia-Central composite block split away from North America during the Rodinia break-up and experienced the Pan-African-Brasiliano orogeny that led to Gondwana assembly. During the Cenozoic, the reactivation of translithospheric faults bounding this composite old SCLM provided preferential pathways for focusing the ascent of ore-productive magmas/fluids associated with the subduction-related metallogeny of the Pacific active margin of Mexico.
DOI: 10.34740/kaggle/dsv/7229982
title: 2021 World Population (updated daily)
DOI: 10.34740/kaggle/dsv/7229988
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.5281/zenodo.10401431
title: 'Other Specimen' records for the checklist of birds of Jammu & Kashmir, India

description: This is a supplementary information on the specimen records for the checklist of birds of Jammu & Kashmir, India. Only those specimen are provided here which are not listed on GBIF or have been missed out because of locality issue on GBIF.
DOI: 10.5281/zenodo.10401432
title: 'Other Specimen' records for the checklist of birds of Jammu & Kashmir, India

description: This is a supplementary information on the specimen records for the checklist of birds of Jammu & Kashmir, India. Only those specimen are provided here which are not listed on GBIF or have been missed out because of locality issue on GBIF.
DOI: 10.22002/sh33z-hrx98
title: Efficient and accurate detection of viral sequences at single-cell resolution reveals novel viruses perturbing host gene expression

description: Single-cell RNA sequencing count matrices and other data generated in the manuscript "Efficient and accurate detection of viral sequences at single-cell resolution reveals novel viruses perturbing host gene expression". The code used to generate these files can be found here: https://github.com/pachterlab/LSCHWCP_2023
If you use this data, please cite the manuscript: 
Laura Luebbert, Delaney K Sullivan, Maria Carilli, Kristjan Eldjarn Hjorleifsson, Alexander Viloria Winnett, Tara Chari, Lior Pachter (2023). Efficient and accurate detection of viral sequences at single-cell resolution reveals novel viruses perturbing host gene expression. bioRxiv 2023.12.11.571168; doi: https://doi.org/10.1101/2023.12.11.571168
View the manuscript here: https://www.biorxiv.org/content/10.1101/2023.12.11.571168
DOI: 10.17630/66a59db2-4d79-4457-b019-b99bfa9c0eff
title: Photocatalytic C(sp3)–C(sp2) radical-polar crossover cross-coupling of styrenyl boronic acids (thesis data)

description: The attached Data files underpin the publication of my research, described in the following thesis: Photocatalytic C(sp3)–C(sp2) radical-polar crossover cross-coupling of styrenyl boronic acids. The following file types and formats includes: - 1H NMR and 13C NMR of every single molecule synthesised. - 11B and 19F NMR of the structure (if applicable). Every single molecule has a unique number (3.XX) corresponding to a folder containing all the NMR data. NMR data can opened with Mnova or Topspin Instruments 1H, 13C {1H}, 19F {1H} NMR spectra were recorded by either a Bruker AVII 400 (BBFO probe) or AVIII HD 500 or AVIII 500 with BBFO+ and Prodigy BBFO probes, respectively, at 400 101-376 MHz or at 500-126-377 MHz respectively. 11B NMR spectra were recorded on a Bruker AV300 spectrometer at 96 MHz or on a Bruker AVII 400 spectrometer at 128 MHz. All spectra were recorded at room temperature with the deuterated solvents used as a lock for spectra and internal reference (CDCl3: 1H, 7.26 ppm; 13C, 77.2 ppm; acetone-d6: 1H, 2.05 ppm, 13C, 29.8 ppm; d6-DMSO-d6: 1H, 2.50 ppm, 13C, 39.5 ppm; MeCN-d3: 1H, 1.94 ppm, 13C, 1.3 ppm)
DOI: 10.17630/c835efe3-402d-4a9d-8ea0-afc5bad6efd2
title: Orientation distributions of vacuum-deposited organic emitters revealed by single-molecule microscopy (dataset)
DOI: 10.17630/fa3d7e31-ff9c-45ad-a5d1-db2d03f8011c
title: Mixed metal-organic framework mixed-matrix membranes: insights into simultaneous moisture-triggered and catalytic delivery of nitric oxide using cryo-scanning electron microscopy (dataset)
DOI: 10.6084/m9.figshare.24850608
title: Data_Availability

description: The data corresponding to the Figures in the article.
DOI: 10.6084/m9.figshare.24850608.v1
title: Data_Availability

description: The data corresponding to the Figures in the article.
DOI: 10.6084/m9.figshare.24850683
title: Subset of GSE192456

description: This repository contains the code and materials for the paper "Teaching Biomedical Students to Use Complex Objects for Omics Data Storage and Analysis: A Classroom Implementation Strategy Using Jupyter Notebooks"Leonardo D. Garma*, Breast Cancer Clinical Research Unit, Centro Nacional de Investigaciones Oncológicas – CNIO, Madrid, Spain;Nuno S. Osório*, Life and Health Sciences Research Institute (ICVS), School of Medicine, University of Minho, Portugal and ICVS/3B’s –PT Government Associate Laboratory, Braga, PortugalCorresponding authors: lgarma@cnio.es, nosorio@med.uminho.pt
DOI: 10.6084/m9.figshare.24850683.v1
title: Subset of GSE192456

description: This repository contains the code and materials for the paper "Teaching Biomedical Students to Use Complex Objects for Omics Data Storage and Analysis: A Classroom Implementation Strategy Using Jupyter Notebooks"Leonardo D. Garma*, Breast Cancer Clinical Research Unit, Centro Nacional de Investigaciones Oncológicas – CNIO, Madrid, Spain;Nuno S. Osório*, Life and Health Sciences Research Institute (ICVS), School of Medicine, University of Minho, Portugal and ICVS/3B’s –PT Government Associate Laboratory, Braga, PortugalCorresponding authors: lgarma@cnio.es, nosorio@med.uminho.pt
DOI: 10.5519/qd.9wzsnech
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (220 records)
DOI: 10.4121/21732818
title: Dataset underlying the publication Tidal dynamics limit river plastic transport

description: This dataset contains continuous estimates of floating macroplastic transport, flow velocities and river discharge over three full tidal cycles over the Saigon river, Vietnam. More information is provided in the README file and in the associated publication listed below.
DOI: 10.4121/21732818.v1
title: Dataset underlying the publication Tidal dynamics limit river plastic transport

description: This dataset contains continuous estimates of floating macroplastic transport, flow velocities and river discharge over three full tidal cycles over the Saigon river, Vietnam. More information is provided in the README file and in the associated publication listed below.
DOI: 10.5281/zenodo.8390941
title: Dataset for: Multi-mode Heterodyne Laser Interferometry Realized via Software Defined Radio

description: Repository of data plotted in figures for the journal publication "Multi-mode Heterodyne Laser Interferometry Realized via Software Defined Radio" (doi: 10.1364/OE.500077 ).


Please see metadata file for details on individual data files.
DOI: 10.5281/zenodo.10401163
title: mSWEEP/mGEMS Klebsiella database

description: mSWEEP/mGEMS Klebsiella used in the article Strong pathogen competition in neonatal gut colonisation (published 01 Dec 2022).

Changelog

v1.1.0 (18 Dec 2023): Added the assemblies.
DOI: 10.5281/zenodo.6656911
title: mSWEEP/mGEMS Klebsiella database

description: mSWEEP/mGEMS Klebsiella database
DOI: 10.5281/zenodo.10401549
title: mSWEEP/mGEMS Klebsiella database

description: mSWEEP/mGEMS Klebsiella used in the article Strong pathogen competition in neonatal gut colonisation (published 01 Dec 2022).

Changelog

v1.1.1 (18 Dec 2023): Added a file linking the `id` field in Klebsiella_assemblies_info.tsv to the ENA/NCBI run accession.v1.1.0 (18 Dec 2023): Added the assemblies.
DOI: 10.5281/zenodo.6656910
title: mSWEEP/mGEMS Klebsiella database

description: mSWEEP/mGEMS Klebsiella used in the article Strong pathogen competition in neonatal gut colonisation (published 01 Dec 2022).

Changelog

v1.1.1 (18 Dec 2023): Added a file linking the `id` field in Klebsiella_assemblies_info.tsv to the ENA/NCBI run accession.v1.1.0 (18 Dec 2023): Added the assemblies.
DOI: 10.5281/zenodo.10390676
title: Geometries for "X-ray Absorption Spectra for Aqueous Ammonia and Ammonium: Quantum Mechanical versus Molecular Mechanical Embedding Schemes"

description: 195 clusters of ammonia and ammonium in water, used in "X-ray Absorption Spectra for Aqueous Ammonia and Ammonium: Quantum Mechanical versus Molecular Mechanical Embedding Schemes"

The geometries were first used in J. Am. Chem. Soc. 2017, 139, 36, 12773–12783, and later in J. Phys. Chem. Lett. 2021, 12, 36, 8865–8871
DOI: 10.5281/zenodo.10390675
title: Geometries for "X-ray Absorption Spectra for Aqueous Ammonia and Ammonium: Quantum Mechanical versus Molecular Mechanical Embedding Schemes"

description: 195 clusters of ammonia and ammonium in water, used in "X-ray Absorption Spectra for Aqueous Ammonia and Ammonium: Quantum Mechanical versus Molecular Mechanical Embedding Schemes"

The geometries were first used in J. Am. Chem. Soc. 2017, 139, 36, 12773–12783, and later in J. Phys. Chem. Lett. 2021, 12, 36, 8865–8871
DOI: 10.25500/edata.bham.00001041
title: Research data supporting the publication "A laterally-fused N-heterocyclic carbene framework from amino-imidazo[5,1-b]oxazol-6-ium salts"
DOI: 10.25625/geyzay/u40uz0
title: 1_QueryDatasets.ipynb

description: :unav
DOI: 10.25625/geyzay/fuodpy
title: 2_RunAnalysis.ipynb

description: :unav
DOI: 10.25625/geyzay/pt4des
title: Kapitel_IV_Welt_Abb_3_1.svg

description: :unav
DOI: 10.25625/geyzay/r6qecu
title: Kapitel_IV_MPG_Fig_3_2.svg

description: :unav
DOI: 10.25625/geyzay/y6p2vf
title: Kapitel_IV_MPG_Fig_3_2.png

description: :unav
DOI: 10.25625/geyzay/nlntbv
title: Kapitel_IV_Welt_Abb_3_1.png

description: :unav
DOI: 10.25625/geyzay
title: Vergleich des Publikations-Outputs der MPG mit der Entwicklung der Anzahl wissenschaftlicher Publikationen weltweit

description: Die Abbildungen zeigen die Veränderung in der Anzahl wissenschaftlicher Publikation differenziert nach den Wissenschaften zwischen 1965 und 2005. Das erste Diagramm zeigt den absoluten Publikations-Output weltweit; das zweite Diagramm zeigt dazu im Vergleich den Publikations-Output der MPIs. Deutlich werden die zur weltweiten Wissenschaftsentwicklung unterschiedenen Schwerpunkte der MPIs. Daneben zeigt sich eine beschleunigte Zunahme an Publikationen aus MPIs in den 1990er Jahren.
DOI: 10.5281/zenodo.10401360
title: CPAZMAL: Cryosphere PAZ satellite MAchine Learning

description: CPAZMAL: Cryosphere PAZ satellite MAchine Learning

The aim of this dataset is to serve as a foundation for machine learning in multi-class classification, specifically in mountainous regions. It comprises descending images acquired by the PAZ X-band satellite, focusing on the Mont Blanc region during the period from January 2020 to November 2021, totaling 56 acquisitions.

The time series is divided into two sub-sections:



From January 2020 to 8th January 2021 included: dual polarisation HH and HV,

After 8th January 2021: single polarisation HH.




The datas are divided into 8 classes:





Hanging Glacier (HAG)

Ice Aperon (ICA)

Ablation area

Accumulation area

Rock

Plain

Forest

City


In each classe, between 4 to 10 groups or distinct areas, where their complete description (position, aspect, elevation, ...) can be found in the desc_topo_areas.png file


We provide code that directly extracts temporal or spatial datasets, consisting of homogeneous windows paired with respective labels.



# Request and save data into hdf5 file
rqtemp = "classe in ['ICA','HAG','ABL','ACC','FOR','CIT','ROC','PLA'] & date < '2021-01-01'"
cdlf = Dataset_tiff2hdf5
		(
            path_to_folder_extracted, 
            different_group=True,
            n_jobs=1,
            outpath="path_to_dataset.h5", 
            extension="temporal"
        )
cdlf.extract_data(rqtemp, polarisation="HH", winsize=7, save=True)


# Load the previously extracted data set
(
    x,
    y,
    gr,
    org,
    _,
) = load_h5(path_to_dataset.h5)


An example of how to use it can be found at Github.

 



The authors would like to thank the Spanish Instituto Nacional de Tecnica Aerospacial (INTA) for the PAZ images (Project AO-001-051)
DOI: 10.5281/zenodo.10401359
title: CPAZMAL: Cryosphere PAZ satellite MAchine Learning

description: CPAZMAL: Cryosphere PAZ satellite MAchine Learning

The aim of this dataset is to serve as a foundation for machine learning in multi-class classification, specifically in mountainous regions. It comprises descending images acquired by the PAZ X-band satellite, focusing on the Mont Blanc region during the period from January 2020 to November 2021, totaling 56 acquisitions.

The time series is divided into two sub-sections:



From January 2020 to 8th January 2021 included: dual polarisation HH and HV,

After 8th January 2021: single polarisation HH.




The datas are divided into 8 classes:





Hanging Glacier (HAG)

Ice Aperon (ICA)

Ablation area

Accumulation area

Rock

Plain

Forest

City


In each classe, between 4 to 10 groups or distinct areas, where their complete description (position, aspect, elevation, ...) can be found in the desc_topo_areas.png file


We provide code that directly extracts temporal or spatial datasets, consisting of homogeneous windows paired with respective labels.



# Request and save data into hdf5 file
rqtemp = "classe in ['ICA','HAG','ABL','ACC','FOR','CIT','ROC','PLA'] & date < '2021-01-01'"
cdlf = Dataset_tiff2hdf5
		(
            path_to_folder_extracted, 
            different_group=True,
            n_jobs=1,
            outpath="path_to_dataset.h5", 
            extension="temporal"
        )
cdlf.extract_data(rqtemp, polarisation="HH", winsize=7, save=True)


# Load the previously extracted data set
(
    x,
    y,
    gr,
    org,
    _,
) = load_h5(path_to_dataset.h5)


An example of how to use it can be found at Github.

 



The authors would like to thank the Spanish Instituto Nacional de Tecnica Aerospacial (INTA) for the PAZ images (Project AO-001-051)
DOI: 10.5281/zenodo.8205605
title: Dataset of the paper "Software Supply Chain Meets Large Language Models: Can Dependency-related Problems Be Solved?"

description: This is the dataset of the paper "Software Supply Chain Meets Large Language Models: Can Dependency-related Problems Be Solved?"
DOI: 10.5281/zenodo.8205606
title: Dataset of the paper "Software Supply Chain Meets Large Language Models: Can Dependency-related Problems Be Solved?"

description: This is the dataset of the paper "Software Supply Chain Meets Large Language Models: Can Dependency-related Problems Be Solved?"
DOI: 10.5281/zenodo.10401583
title: final data of Thai EPN VS CCW
DOI: 10.5281/zenodo.10401582
title: final data of Thai EPN VS CCW
DOI: 10.57771/41ac-7y72
title: VGT-Dutch Hotel Review Corpus
title: VGT-HoReCo

description: <p>Parallel corpus of hotel reviews in written Dutch and in Flemish Sign Language (VGT) videos.</p>
DOI: 10.57771/bdgw-bc16
title: VGT-Dutch Hotel Review Corpus
title: VGT-HoReCo

description: <p>Parallel corpus of hotel reviews in written Dutch and in Flemish Sign Language (VGT) videos.</p>
DOI: 10.6084/m9.figshare.20496797
title: Polarisabilities of iterated stockholder atoms

description: Polarisabilities of atoms within molecules can be calculated from molecular electron densities using the density partitioning method known as Iterated Stockholder Atoms (ISA). Non-local polarisation effects are removed by optimising the ISA functional for the perturbed electron density, with the additional constraint that the atomic charges do not change. The resulting atomic polarisabilities are chemically reasonable, tend to become smaller as the atomic charge becomes more positive, and are approximately transferable between atoms in similar chemical environments. The methodology can be extended to calculate local higher-rank polarisabilities and dispersion energy coefficients.
DOI: 10.6084/m9.figshare.20496797.v1
title: Polarisabilities of iterated stockholder atoms

description: Polarisabilities of atoms within molecules can be calculated from molecular electron densities using the density partitioning method known as Iterated Stockholder Atoms (ISA). Non-local polarisation effects are removed by optimising the ISA functional for the perturbed electron density, with the additional constraint that the atomic charges do not change. The resulting atomic polarisabilities are chemically reasonable, tend to become smaller as the atomic charge becomes more positive, and are approximately transferable between atoms in similar chemical environments. The methodology can be extended to calculate local higher-rank polarisabilities and dispersion energy coefficients.
DOI: 10.4121/da3376f2-ea1d-453a-89e7-d607f93a7e8b
title: The geochemical and zircon U-Pb dating data of the Milai section in the Gonjo Basin, Southeast Tibet

description: The geochemical data (in our case Rb/Sr and Ti/Ca data) were measured using an Innov-X Systems X-ray fluorescence (XRF) spectrometer, and used to carried out cyclostratigraphic analysis (and establish a floating astronomical timescale) and trace orbital-scale climate changes in the Gonjo Basin. The zircon U-Pb dating were performed using an Agilent 7900 ICP-MS equipped with a coherent 193 nm excimer laser ablation system (GeoLas HD) and identified the age of the volcanic layer at 866 m in the Gonjo Basin, and anchored in numerical time in order to obtain an absolute astronomical timescale.
DOI: 10.25934/pr00007679.0
title: Available IPD datapackage for study 'A phase II, double-blind, placebo controlled, randomised study to assess the efficacy and safety of ZD6474 in combination with Arimidex™ vs. Arimidex alone in patients with hormone sensitive (ER+ve and/or PR+ve) tumours as 2nd line treatment for advanced breast cancer (ABC)'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.6084/m9.figshare.24849621.v1
title: HyperDC Figure 2: PAAm bead stress measurements - 1

description: This dataset contains the raw measurement data for the stress measurements using PAAm beads described in Reichel et al. "High-throughput viscoelastic characterization of cells in hyperbolic microchannels" (Fig. 2), https://www.biorxiv.org/content/10.1101/2023.12.10.571005
DOI: 10.6084/m9.figshare.24850728
title: refractive error in dominant and non-dominant eye

description: to assess the refractive asymmetry and eye dominance.
DOI: 10.6084/m9.figshare.24850728.v1
title: refractive error in dominant and non-dominant eye

description: to assess the refractive asymmetry and eye dominance.
DOI: 10.5281/zenodo.10401649
title: Input datasets for the Galactic Tomography (G-Tomo) EXPLORE app

description: Dust extinction density cubes at different spatial resolutions and extends
DOI: 10.5281/zenodo.10401650
title: Input datasets for the Galactic Tomography (G-Tomo) EXPLORE app

description: Dust extinction density cubes at different spatial resolutions and extends
DOI: 10.5517/ccdc.csd.cc2bck8k
title: CCDC 2156058: Experimental Crystal Structure Determination

description: Related Article: Johannes Hungwe, Piwai Tshuma, Maureen Gumbo, Francoise M. Amombo Noa, Lars Öhrström, Gift Mehlana|2023|CrystEngComm|25|1486|doi:10.1039/D3CE00039G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/7230374
title: COVID Vaccination in World (updated daily)
DOI: 10.5281/zenodo.10401592
title: Volume of Interest VOI(3) and  Volume of Interest VOI(4) of human knee meniscus

description: This link contains the STL files and an example of the image stack (VOI(3)) of two cylindrical samples of human knee meniscus extracted from a micro CT scan of the body region of the tissue and edited for CFD simulations. These are identified as Volume of Interest  3 - VOI(3) and Volume of Interest  4 - VOI(4) . Statistical characterization of architectural parameters and fluid flow properties will appear in : 'On the characteristics of natural hydraulic dampers: an image based approach to study the fluid flow behaviour inside the human meniscal tissue. ' by Waghorne J., Bonomo F.P., Rabbani A., Bell D., Barrera O. https://arxiv.org/abs/2307.13060v1.
DOI: 10.5281/zenodo.7776196
title: Volume of Interest VOI(3) and  Volume of Interest VOI(4) of human knee meniscus

description: This link contains the STL files and an example of the image stack (VOI(3)) of two cylindrical samples of human knee meniscus extracted from a micro CT scan of the body region of the tissue and edited for CFD simulations. These are identified as Volume of Interest  3 - VOI(3) and Volume of Interest  4 - VOI(4) . Statistical characterization of architectural parameters and fluid flow properties will appear in : 'On the characteristics of natural hydraulic dampers: an image based approach to study the fluid flow behaviour inside the human meniscal tissue. ' by Waghorne J., Bonomo F.P., Rabbani A., Bell D., Barrera O. https://arxiv.org/abs/2307.13060v1.
DOI: 10.5281/zenodo.7776197
title: Volume of Interest VOI(4) of human knee meniscus

description: This link contains the STL file of a cylindrical sample of human knee meniscus extracted from a micro CT scan of the body region of the tissue and edited for CFD simulations. This is identified as Volume of Interest 4 - VOI(4) . Statistical characterization of architectural parameters and fluid flow properties will appear in : 'On the characteristics of natural hydraulic dampers: an image based approach to study the fluid flow behaviour inside the human meniscal tissue. ' by Waghorne J., Bonomo F.P., Rabbani A., Bell D., Barrera O. (to be submitted to PNAS 2023).