cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bte3dn
title: Occurrence Download

description: A dataset containing 289 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ficopomatus enigmaticus",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 289 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029308-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vvbykn
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Miconia brachybotrya"
 ]
}

 The dataset includes 117 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029306-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ra472u
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ficopomatus enigmaticus",
 "Country is Uruguay",
 "HasCoordinate is true"
 ]
}

 The dataset includes 16 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029309-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16921822
title: Proteomics of tau repeat domain interactome via split TurboID proximity labeling in neuronal cells

description: In Alzheimer's disease (AD) and other tauopathies, tau dissociates from microtubules and forms toxic aggregates that contribute to neurodegeneration. Although some of the pathological interactions of tau have been identified from postmortem brain tissue, these studies are limited by their inability to capture transient interactions. To investigate the interactome of aggregate-prone fragments of tau, we applied an in vitro proximity labeling technique using split TurboID fused with the tau microtubule repeat domain (TauRD), a core region implicated in tau aggregation. We characterized this split TurboID TauRD displaying the requirement for both ligase fragment co-expression for robust enzyme activity and nuclear and cytoplasmic localization of the recombinant proteins. Following enrichment of biotinylated proteins and mass spectrometry, we identified over 700 TauRD interactors. Gene ontology analysis of enriched TauRD interactors highlighted processes often dysregulated in tauopathies, including spliceosome complexes, RNA-binding proteins (RBPs), and nuclear speckles. These in vitro results were further supported by integrating the TauRD interactome data with human AD tau interactome datasets and protein co-expression networks from human AD and related tauopathies. This revealed an overlap with the in vitro TauRD interactome and several modules enriched with RBPs and increased in AD and PSP. These findings emphasize the importance of nuclear pathways in tau pathology, such as RNA splicing and nuclear-cytoplasmic transport and establishes the sTurbo TauRD system as a valuable tool for exploring the tau interactome.
DOI: 10.5281/zenodo.16921823
title: Proteomics of tau repeat domain interactome via split TurboID proximity labeling in neuronal cells

description: In Alzheimer's disease (AD) and other tauopathies, tau dissociates from microtubules and forms toxic aggregates that contribute to neurodegeneration. Although some of the pathological interactions of tau have been identified from postmortem brain tissue, these studies are limited by their inability to capture transient interactions. To investigate the interactome of aggregate-prone fragments of tau, we applied an in vitro proximity labeling technique using split TurboID fused with the tau microtubule repeat domain (TauRD), a core region implicated in tau aggregation. We characterized this split TurboID TauRD displaying the requirement for both ligase fragment co-expression for robust enzyme activity and nuclear and cytoplasmic localization of the recombinant proteins. Following enrichment of biotinylated proteins and mass spectrometry, we identified over 700 TauRD interactors. Gene ontology analysis of enriched TauRD interactors highlighted processes often dysregulated in tauopathies, including spliceosome complexes, RNA-binding proteins (RBPs), and nuclear speckles. These in vitro results were further supported by integrating the TauRD interactome data with human AD tau interactome datasets and protein co-expression networks from human AD and related tauopathies. This revealed an overlap with the in vitro TauRD interactome and several modules enriched with RBPs and increased in AD and PSP. These findings emphasize the importance of nuclear pathways in tau pathology, such as RNA splicing and nuclear-cytoplasmic transport and establishes the sTurbo TauRD system as a valuable tool for exploring the tau interactome.
DOI: 10.5066/p9nthdtd
title: USGS Surface-Water Data for the Nation - National Water Information System (NWIS)

description: These data were released prior to the October 1, 2016 effective date for the USGS&rsquo;s policy dictating the review, approval, and release of scientific data as referenced in USGS Survey Manual Chapter 502.8 Fundamental Science Practices: Review and Approval of Scientific Data for Release.  The USGS compiles online access to water-resources data collected at approximately 1.5 million sites in all 50 States, the District of Columbia, Puerto Rico, the Virgin Islands, Guam, American Samoa and the Commonwealth of the Northern Mariana Islands.
DOI: 10.15468/dl.bztk4w
title: Occurrence Download

description: A dataset containing 599 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Distribución histórica, prospección actual y áreas potenciales para reintroducir lobo mexicano (Canis lupus baileyi) en Durango, sur de la Sierra Madre Occidental, México"
 ]
}

 The dataset includes 599 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029311-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3bhmjf
title: Occurrence Download

description: A dataset containing 112 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.basisofrecord IN ('HUMAN_OBSERVATION', 'MACHINE_OBSERVATION', 'MATERIAL_SAMPLE', 'PRESERVED_SPECIMEN', 'OCCURRENCE')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (CAST(occurrence.taxonkey AS INTEGER) = 5137890 OR CAST(occurrence.acceptedtaxonkey AS INTEGER) = 5137890 OR CAST(occurrence.kingdomkey AS INTEGER) = 5137890 OR CAST(occurrence.phylumkey AS INTEGER) = 5137890 OR CAST(occurrence.classkey AS INTEGER) = 5137890 OR CAST(occurrence.orderkey AS INTEGER) = 5137890 OR CAST(occurrence.familykey AS INTEGER) = 5137890 OR CAST(occurrence.genuskey AS INTEGER) = 5137890 OR CAST(occurrence.specieskey AS INTEGER) = 5137890)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 112 records were derived from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029270-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u4hh24
title: Occurrence Download

description: A dataset containing 607 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((11.36385 -2.98435,11.38487 -3.10522,11.49733 -3.13885,11.67285 -3.11678,11.717 -3.02324,11.59508 -2.91183,11.49103 -2.90447,11.36385 -2.98435))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 607 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029312-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fe5utc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eugenia uniflora",
 "Country is Antigua and Barbuda",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029314-250811113504898/datasets/export for details.
DOI: 10.15468/dl.bzhhye
title: Occurrence Download

description: A dataset containing 1670 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Bisnaga histrix"
 ]
}

 The dataset includes 1670 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029313-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16429480
title: Photometric Calibration of JunoCam (trained UNSB models, training data, mosaics)

description: This repository contains 1) trained models for photometric calibration of JunoCam, 2) the training dataset along with a demo set, and 3) examples of calibrated mosaics. These data products are a result of the ROSES NFDAP project: "Disentangling Jupiter’s Complex Atmospheric Processes Through the Application of Machine Learning Methods to JunoCam Data".

Please note that the unzipped training set is ~90GB.
DOI: 10.5281/zenodo.16429481
title: Photometric Calibration of JunoCam (trained UNSB models, training data, mosaics)

description: This repository contains 1) trained models for photometric calibration of JunoCam, 2) the training dataset along with a demo set, and 3) examples of calibrated mosaics. These data products are a result of the ROSES NFDAP project: "Disentangling Jupiter’s Complex Atmospheric Processes Through the Application of Machine Learning Methods to JunoCam Data".

Please note that the unzipped training set is ~90GB.
DOI: 10.15468/dl.98kk2n
title: Occurrence Download

description: A dataset containing 62813 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Laboratory of Tree-Ring Research Natural History Collection"
 ]
}

 The dataset includes 62813 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029292-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.serhbr
title: Occurrence Download

description: A dataset listing the 18 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-90.27680 8.98212,-84.69293 8.98212,-84.69293 11.21441,-90.27680 11.21441,-90.27680 8.98212))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Meloidae"
 ]
}

 The dataset's 18 records were derived from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029288-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tsnj9t
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eugenia uniflora",
 "Country is Bahamas",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029315-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.84nrxa
title: Occurrence Download

description: A dataset containing 228 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chelonia mydas",
 "Year 2025-2025"
 ]
}

 The dataset includes 228 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029316-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jy3zbr
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Boccardiella ligerica",
 "Country is Germany",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029318-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5xcvg5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Boccardiella ligerica",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029317-250811113504898/datasets/export for details.
DOI: 10.15468/dl.wphrhe
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Boccardiella ligerica",
 "Country is Mexico",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029319-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dc2dmz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eugenia uniflora",
 "Country is Comoros",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029321-250811113504898/datasets/export for details.
DOI: 10.15468/dl.2ftm86
title: Occurrence Download

description: A dataset containing 565 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Streptoprocne phelpsi"
 ]
}

 The dataset includes 565 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029320-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12830190
title: Antutu Benchmark
DOI: 10.15468/dl.v4us46
title: Occurrence Download

description: A dataset containing 2893 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Inventario de ofiuroideos del Pacífico mexicano"
 ]
}

 The dataset includes 2893 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029322-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vzcsch
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eugenia uniflora",
 "Country is Cook Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029323-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d9smfx
title: Occurrence Download

description: A dataset containing 2124011 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "OccurrenceStatus is Present",
 "Year 2023-2025"
 ]
}

 The dataset includes 2124011 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029272-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29921969
title: Supplementary material for: "GhostParser: A highly scalable phylogenomic approach for the identification of ghost introgression.

description: Simulated_datasets.zip is a zipped directory containing the simulated dataset used to test the accuracy of GhostParser, including the gene trees, gene tree alignments, estimated gene trees. The first level of the unzipped directory contains the directories GAMMA_0.01, Gamma_0.05<br><br>Demography.zip<br><br>cd weBPP_output.zip is a zipped directory containing...
DOI: 10.6084/m9.figshare.29921969.v1
title: Supplementary material for: "GhostParser: A highly scalable phylogenomic approach for the identification of ghost introgression.

description: Simulated_datasets.zip is a zipped directory containing the simulated dataset used to test the accuracy of GhostParser, including the gene trees, gene tree alignments, estimated gene trees. The first level of the unzipped directory contains the directories GAMMA_0.01, Gamma_0.05<br><br>Demography.zip<br><br>cd weBPP_output.zip is a zipped directory containing...
DOI: 10.15468/dl.sbcsxp
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Boccardiella ligerica",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029325-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sfbqmy
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Boccardiella ligerica",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 29 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029326-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.swj7nh
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eugenia uniflora",
 "Country is Costa Rica",
 "HasCoordinate is true"
 ]
}

 The dataset includes 120 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029327-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b82dxf
title: Occurrence Download

description: A dataset containing 15584 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate reprojected, The taxon concept ID was not used in backbone matching, The taxon ID was not used in backbone matching, Continent derived from coordinates, The scientific name ID was not used in backbone matching, Coordinate rounded, Country derived from coordinates)",
 "OccurrenceStatus is Present",
 "TaxonKey is Necrosyrtes monachus (Temminck, 1823)",
 "Year 1970-2015"
 ]
}

 The dataset includes 15584 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000320-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f8t57z
title: Occurrence Download

description: A dataset containing 118916 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Muntiacus reevesi (Ogilby, 1839)"
 ]
}

 The dataset includes 118916 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000305-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3zggpe
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alysicarpus vaginalis",
 "Country is Timor-Leste",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085614-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e44pcw
title: Occurrence Download

description: A dataset containing 7731 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Geodetic datum assumed WGS84, Geodetic datum invalid, Coordinate reprojected, Country derived from coordinates, Continent derived from coordinates, Recorded date invalid, Recorded date mismatch, Modified date invalid, Identified date invalid, Basis of record invalid, Type status invalid, Occurrence status inferred from individual count, Institution match none, Collection match none, Institution match fuzzy, Collection match fuzzy, Institution collection mismatch, Coordinate rounded, The taxon ID was not found in the checklist, The taxon concept ID was not found in the checklist, The scientific name ID was not found in the checklist)",
 "OccurrenceStatus is Present",
 "TaxonKey is Bubalus bubalis"
 ]
}

 The dataset includes 7731 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023457-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/3ke-rvh-6fv
title: †Miogypsina Sacco, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p1c-2x4-3xy
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z9q-vj6-60z
title: Biflustra arborescens (Canu & Bassler, 1928)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/awf-8lx-1ev
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vss-jkn-ac9
title: Poricellaria d'Orbigny, 1854

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hyt-8kw-bv8
title: Scrupocellaria van Beneden, 1845

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jyb-yj6-psx
title: †Alveolina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.