cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9ebk6h
title: Occurrence Download

description: A dataset listing the 2146200 species recorded in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 2146200 records were derived from 26250 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134777-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g37j58
title: Occurrence Download

description: A dataset containing 263 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Themisto compressa Goës, 1866",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 263 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078655-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ldxtxq
title: Occurrence Download

description: A dataset containing 955 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((26.77368 31.10076,27.31201 31.10076,27.31201 31.51824,26.77368 31.51824,26.77368 31.10076))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 955 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022737-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8p22mf
title: Occurrence Download

description: A dataset containing 10305 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zostera caespitosa Miki"
 ]
}

 The dataset includes 10305 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0142072-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.udvvcw
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Frankenia fruticosa J.C.Manning & Helme"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0202315-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.768guj
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Habenaria petromedusa Webb"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016533-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.23300852
title: Synthesis, NMR kinetics and dynamic structure of a 17-mer heptaloop RNA hairpin carrying a 3-<i>N</i>-methyluridine nucleotide residue in the loop region

description: A 17-mer RNA hairpin (5'GGGAGU<b>X</b>AGCGGCUCCC3') carrying 3-<i>N</i>-methyluridine (m3U) at position <b>X</b> (m3U7-RNA), designed to represent the anticodon stem-loop (ACSL) region of tRNAs to study an open loop state (O-state), was synthesized, purified by HPLC, and characterized by MALDI-ToF_MS and NMR methods. <sup>1</sup>H-NMR data revealed primary (P-state in 56.1%), secondary (S-state in 43.9%) and tertiary (∼5-6%) ACSL conformations. Exchange rate constant (k<sub>ex</sub>) for interconversion between P and S states is 112 sec<sup>−1</sup> (&lt;Δω ∼454 rad/sec), confirming a slow exchange regime between the two states. Forward (k<i><sub>PS</sub></i>) and backward (k<i><sub>SP</sub></i>) rate constants are 49.166 sec<sup>−1</sup> and 62.792 sec<sup>−1</sup>, respectively, leading to a longer life-time (20.339 msec) for the P-state and a shorter life-time (15.926 msec) for the S-state. In accordance with conformational populations determined by <sup>1</sup>H-NMR, dynamics of the P/S/tertiary states of m3U7-RNA and its wild-type counterpart (wt-RNA) were studied by three independent MD production simulations. Cluster analysis revealed that wt-RNA reflects the structural characteristics of the ACSL region of tRNAs. The P-state of m3U7-RNA was found to be structurally similar to wt-RNA but lacks an intraloop H-bond between m3U7 and C10 (U33 and nt36 in tRNAs). In the S-state of m3U7-RNA, m3U7 flips out of the loop region. O-state loop conformations of m3U7-RNA were also clustered (4.8%), wherein the loop nucleotides m3U7.A8.G9.C10.G11 stack one after another. We propose that the O-state of m3U7-RNA is the most suitable conformation that makes the loop accessible for complementary nucleotides and for non-enzymatic primordial replication of small circular RNAs. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.23300852.v1
title: Synthesis, NMR kinetics and dynamic structure of a 17-mer heptaloop RNA hairpin carrying a 3-<i>N</i>-methyluridine nucleotide residue in the loop region

description: A 17-mer RNA hairpin (5'GGGAGU<b>X</b>AGCGGCUCCC3') carrying 3-<i>N</i>-methyluridine (m3U) at position <b>X</b> (m3U7-RNA), designed to represent the anticodon stem-loop (ACSL) region of tRNAs to study an open loop state (O-state), was synthesized, purified by HPLC, and characterized by MALDI-ToF_MS and NMR methods. <sup>1</sup>H-NMR data revealed primary (P-state in 56.1%), secondary (S-state in 43.9%) and tertiary (∼5-6%) ACSL conformations. Exchange rate constant (k<sub>ex</sub>) for interconversion between P and S states is 112 sec<sup>−1</sup> (&lt;Δω ∼454 rad/sec), confirming a slow exchange regime between the two states. Forward (k<i><sub>PS</sub></i>) and backward (k<i><sub>SP</sub></i>) rate constants are 49.166 sec<sup>−1</sup> and 62.792 sec<sup>−1</sup>, respectively, leading to a longer life-time (20.339 msec) for the P-state and a shorter life-time (15.926 msec) for the S-state. In accordance with conformational populations determined by <sup>1</sup>H-NMR, dynamics of the P/S/tertiary states of m3U7-RNA and its wild-type counterpart (wt-RNA) were studied by three independent MD production simulations. Cluster analysis revealed that wt-RNA reflects the structural characteristics of the ACSL region of tRNAs. The P-state of m3U7-RNA was found to be structurally similar to wt-RNA but lacks an intraloop H-bond between m3U7 and C10 (U33 and nt36 in tRNAs). In the S-state of m3U7-RNA, m3U7 flips out of the loop region. O-state loop conformations of m3U7-RNA were also clustered (4.8%), wherein the loop nucleotides m3U7.A8.G9.C10.G11 stack one after another. We propose that the O-state of m3U7-RNA is the most suitable conformation that makes the loop accessible for complementary nucleotides and for non-enzymatic primordial replication of small circular RNAs. Communicated by Ramaswamy H. Sarma
DOI: 10.15468/dl.dxy53b
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chuquiraga calchaquina Cabrera"
 ]
}

 The dataset includes 47 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022737-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24366442
title: Variolin B from sea sponge against lung cancer: a multitargeted molecular docking with fingerprinting and molecular dynamics simulation study

description: Lung Cancer is the one that causes more fatalities in the world compared to other cancers, and its uniqueness is that it can be found in both males and females. However, recent data has shown that males are more affected due to lifestyle habits like smoking, tobacco consumption and inhaling polluted air. The World Health Organization has kept lung cancer on its priority list as it causes 1.8 million deaths worldwide each year, and the predictions show that the cases are going to increase year by year, and by 2050, there can be 3.8 million new cases and 3.2 million deaths, and the global health system is not prepared for it. Also, finding drug candidates that can help shrink cancerous cells and lead to their death is essential to reduce global mortality. The system needs drug compounds that can inhibit multiple paths together not to enter drug resistance quickly and to reduce costs. Our study identified a compound named Variolin B (DB08694) that belongs to the organic compounds class of pyrrolopyridines. The identified compound can inhibit multiple proteins, drastically reducing the global burden. Variolin B was identified as a potential candidate against lung cancer using the multisampling algorithm such as HTVS, SP, and XP, followed by MM\GBSA calculations showing the docking score of −9.245 Kcal/mol to −5.92 Kcal/mol. Also, we have validated it with ADMET predictions and molecular fingerprinting to analyse the interaction patterns. Further, the study was extended to molecular dynamics simulations for 100 ns to understand the complex stability and simulative interactions. The complex’s overall molecular dynamics simulation helped us understand that the identified candidate is stable with the lowest deviation and fluctuations. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.24366442.v1
title: Variolin B from sea sponge against lung cancer: a multitargeted molecular docking with fingerprinting and molecular dynamics simulation study

description: Lung Cancer is the one that causes more fatalities in the world compared to other cancers, and its uniqueness is that it can be found in both males and females. However, recent data has shown that males are more affected due to lifestyle habits like smoking, tobacco consumption and inhaling polluted air. The World Health Organization has kept lung cancer on its priority list as it causes 1.8 million deaths worldwide each year, and the predictions show that the cases are going to increase year by year, and by 2050, there can be 3.8 million new cases and 3.2 million deaths, and the global health system is not prepared for it. Also, finding drug candidates that can help shrink cancerous cells and lead to their death is essential to reduce global mortality. The system needs drug compounds that can inhibit multiple paths together not to enter drug resistance quickly and to reduce costs. Our study identified a compound named Variolin B (DB08694) that belongs to the organic compounds class of pyrrolopyridines. The identified compound can inhibit multiple proteins, drastically reducing the global burden. Variolin B was identified as a potential candidate against lung cancer using the multisampling algorithm such as HTVS, SP, and XP, followed by MM\GBSA calculations showing the docking score of −9.245 Kcal/mol to −5.92 Kcal/mol. Also, we have validated it with ADMET predictions and molecular fingerprinting to analyse the interaction patterns. Further, the study was extended to molecular dynamics simulations for 100 ns to understand the complex stability and simulative interactions. The complex’s overall molecular dynamics simulation helped us understand that the identified candidate is stable with the lowest deviation and fluctuations. Communicated by Ramaswamy H. Sarma
DOI: 10.15468/dl.6vjy4b
title: Occurrence Download

description: A dataset containing 1510 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helichrysum teretifolium (L.) Sweet"
 ]
}

 The dataset includes 1510 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016572-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f9zv7d
title: Occurrence Download

description: A dataset containing 2228 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psathyrostachys Nevski"
 ]
}

 The dataset includes 2228 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150848-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gkrr2g
title: Occurrence Download

description: A dataset containing 6663 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "TaxonKey is Salix lasiolepis Benth.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6663 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022738-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.432f48
title: Occurrence Download

description: A dataset containing 731 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Nerodia taxispilota (Holbrook, 1838)"
 ]
}

 The dataset includes 731 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0207539-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5vukkp
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chuquiraga longiflora (Griseb.) Hieron."
 ]
}

 The dataset includes 136 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022738-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xsh8u3
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Guioa pteropoda Radlk."
 ]
}

 The dataset includes 24 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016545-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vxgcv1
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptuca panacea (Novak & Salmon, 1974)"
 ]
}

 The dataset includes 58 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017211-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p1lsy4
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Conyza deserticola Phil."
 ]
}

 The dataset includes 104 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022739-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5dpc7a
title: Occurrence Download

description: A dataset containing 143 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glossostelma carsonii (N.E.Br.) Bullock"
 ]
}

 The dataset includes 143 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016581-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xu4udb
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Warneckea peculiaris (H.Perrier) Jacq.-Fél."
 ]
}

 The dataset includes 24 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0142073-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y4mbhd
title: Occurrence Download

description: A dataset containing 29998 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fumana procumbens (Dunal) Gren. & Godr."
 ]
}

 The dataset includes 29998 records from 238 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0209180-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.okkjks
title: Occurrence Download

description: A dataset containing 71852 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Stipa L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 71852 records from 348 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022740-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uj5gpb
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glossostelma ceciliae (N.E.Br.) Goyder"
 ]
}

 The dataset includes 24 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016589-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q6y8yd
title: Occurrence Download

description: A dataset containing 371026 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ulmus L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Literature Occurrence, Living Specimen, Specimen, Unknown evidence)",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 371026 records from 848 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0211622-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ykkgn
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex zhenkangensis Tang & F.T.Wang ex S.Yun Liang"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0125475-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qoroez
title: Occurrence Download

description: A dataset containing 48007 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Euplectes afer (Gmelin, 1789)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 48007 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046688-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4pfjde
title: Occurrence Download

description: A dataset containing 560 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thamnophis gigas Fitch, 1940"
 ]
}

 The dataset includes 560 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0277715-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t6sqii
title: Occurrence Download

description: A dataset containing 208 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Barleria lupulina Lindl.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 208 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037186-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5swpsp
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex yushuensis Y.C.Yang"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0125463-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vzmdv6
title: Occurrence Download

description: A dataset containing 2091 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is cave_dwelling_spiders_europe"
 ]
}

 The dataset includes 2091 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0280395-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q5gwyg
title: Occurrence Download

description: A dataset containing 2089 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Limnanthaceae",
 "DecimalLatitude is greater than or equal to -90",
 "DecimalLongitude is greater than or equal to -180"
 ]
}

 The dataset includes 2089 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037189-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6rsut
title: Occurrence Download

description: A dataset containing 1270 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhododendron micranthum Turcz.",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1270 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0125471-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uh8asz
title: Occurrence Download

description: A dataset containing 8748 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-119.4381 34.89373,-119.5281 34.89373,-119.5281 34.80373,-119.4381 34.80373,-119.4381 34.89373))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 2010-2021"
 ]
}

 The dataset includes 8748 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0221691-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.