cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15472/jz7pwv
title: Colección de Aves Museo Universitario de la Universidad de Antioquia

description: Existen 21 museos que tienen colecciones de pieles de aves, la mayoría ubicados en las principales ciudades del país. Una de las colecciones que tiene valiosos ejemplares de aves del departamento de Antioquia es la colección de pieles de aves del Museo Universitario de la Universidad de Antioquia, esta pertenece a la colección Ciencias Naturales Francisco A. Uribe Mejía desde el año 1948. 

Actualmente la colección tiene 663 ejemplares con datos mínimos para fines investigativos, tres de ellos son especies de Estados Unidos, 660 son ejemplares de especies de aves colombianas. Existe otro grupo de ejemplares de docencia que no poseen información asociada. Los ejemplares de aves datan desde 1940, el mayor número de ejemplares colectados datan entre 1970 y 1990 y 2004. Las familias de aves que tienen una buena cantidad de ejemplares, son aves Passeriformes: Thraupidae (tángaras), Trochilidae (colibries) y Tyrannidae (atrapamoscas). Esta colección cuenta con especímenes de distintas partes de Colombia; especialmente de los departamentos de Antioquia, La Guajira, Córdoba, Caquetá y Cundinamarca.

La colección ahora cumple con varios estándares de mantenimiento de especímenes, catalogación, etiquetas, entre otros (Pulgarín et al, 2004). Los esfuerzos recientes han llevado a la colección especímenes únicos en Colombia, como lo son por ejemplo dos machos del inca oscuro (Coeligena orina) colibrí endémico de Colombia y descubierto recientemente en parajes aislados de la cordillera occidental (Krabbe et al, 2005); un especímen del pinchaflor pechirrufo (Diglossa gloriossisima) y adicionalmente hay dos ejemplares del caique candela (Hypopirrhus pyrohipogaster), estos dos últimos endémicos de Colombia y amenazados a nivel global (Birdlife International 2012).
DOI: 10.1594/pangaea.964580
title: Sea urchin population in the Arctic Porsangerfjord

description: We present in depth data of the sea urchin population in the Arctic Porsangerfjord. Sea urchins were collected by hand from randomly chosen square meters of two present habitats: a sea urchin barren, characterized by stony ground without major algae growth, and the neighbouring kelp forest with a healthy macroalgae community. Both habitats are located near the shoreline of a bay in the Porsangerfjord, called the Holmfjord, and sampling took place in less than 1 m depth at low tide. Sampling was conducted in two consecutive years, summer 2022 and summer 2023. Data collected from the sea urchins includes the test-diameter, freshmass, species and morphotype.
DOI: 10.17632/3xktk72wbd.1
title: SPATIOTEMPORAL COORDINATION OF TRANSCRIPTION PREINITIATION COMPLEX ASSEMBLY IN LIVE CELLS. Nguyen et. al.

description: Live-cell, single-molecule tracking (SMT) data of transcription preinitiation complex (PIC) components in Saccharomyces cerevisiae
DOI: 10.17909/bvf5-mp20
title: UNCOVER: A NIRSpec Census of Lensed Galaxies at z=8.50-13.08 Probing a High AGN Fraction and Ionized Bubbles in the Shadow
DOI: 10.21227/5ztn-4k41
title: EMG-EEG dataset for Upper-Limb Gesture Classification 

description: Electromyography (EMG) has limitations in human machine interface due to disturbances like electrode-shift, fatigue, and subject variability. A potential solution to prevent model degradation is to combine multi-modal data such as EMG and electroencephalography (EEG). This study presents an EMG-EEG dataset for enhancing the development of upper-limb assistive rehabilitation devices. The dataset, acquired from thirty-three volunteers without neuromuscular dysfunction or disease using commercial biosensors is easily replicable and deployable. The dataset consists of seven distinct gestures to maximize performance on the Toronto Rehabilitation Institute hand function test and the Jebsen-Taylor hand function test. The authors aim for this dataset to benefit the research community in creating intelligent and neuro-inspired upper limb assistive rehabilitation devices.
DOI: 10.5067/pt6txzkshbw9
title: NASA Ocean Biogeochemical Model assimilating satellite chlorophyll data global daily VR2017
DOI: 10.5258/soton/wp00729
title: Bottom-up gridded population estimates for Nigeria, version 2.0

description: This data release provides gridded population estimates (spatial resolution of 3 arc-seconds, approximately 100 m grid cells) with national coverage for Nigeria, along with estimates of the number of people belonging to various age-sex groups. Version 2.0 is an update of the previous version 1.2 gridded population estimates and is based on more recent and detailed settlement information and a different regional boundary definition. These model-based population estimates most likely represent the time period around 2019, corresponding to the period when the satellite imagery was processed to generate building footprints. Populations are mapped only in areas where residential settlements are predicted.
DOI: 10.5281/zenodo.10730530
title: Observed and model-estimated methane concentration in Western North Pacific in May to June 2021

description: Dissolved methane observations were conducted in the Western North Pacific from May to June 2021. The dataset includes methane vertical profile data, methane data from underway observation, and surface methane concentrations derived from underway data and random forest regression algorithm combined with satellite data.
DOI: 10.5281/zenodo.11653626
title: Data used in the paper "Machine-learning-enhanced automatic spectral characterization of x-ray pulses from a free-electron laser".

description: Data recorded for the experiment at the European XFEL are available at doi:10.22003/XFEL.EU-DATA-900331-00 and doi:10.22003/XFEL.EU-DATA-900383-00.
DOI: 10.5281/zenodo.13607650
title: LUH GRACE(-FO) K-band range-rate post-fit residuals

description: This dataset contains GRACE (Gravity Recovery and Climate Experiment) and GRACE Follow-On K-band range-rate post-fit residuals obtained as part of the gravity field recovery at LUH (Leibniz University Hannover). Data covers the period: 2002/04 - 2023/09.
description: Format:



column: MJD(GPS)

column: GRACE seconds

column: range-rate post-fit residuals in m/s²

column: midpoint latitude in degrees

column: midpoint longitude in degrees
DOI: 10.5281/zenodo.7848435
title: Physico-chemical properties of the top 120 m of two ice cores in Dronning Maud Land (East Antarctica)

description: We provide in this dataset the complete records from the top 120 m of two ice cores drilled on two adjacent ice rises (Hammarryggen and Lokeryggen, ~100 km apart) located in coastal Dronning Maud Land, Antarctica. Density, water stable isotopes (δ<sup>18</sup>O, δD and d-excess), ions concentrations (Na<sup>+</sup>, K<sup>+</sup>, Mg<sup>+</sup>, Ca<sup>+</sup>, MSA, Cl<sup>-</sup>, SO<sub>4</sub><sup>2-</sup> and NO<sub>3</sub><sup>-</sup>), and continuous electrical conductivity measurement (ECM) records, as well as age models and resulting surface mass balance (SMB) are presented here. These ice cores are dated back to the end of the eighteenth century (CE 1793 ± 3 years for FK17and 1780 ± 5 years for TIR18) by manual and automatic multivariable layer counting and volcanic tie points validation. The SMB is calculated after correction for vertical strain rates. A detailed description of the measurement procedures, data treatments and uncertainties can be found in: Wauthy S., Tison, J.-L., Inoue, M., El Amri, S., Sun, S., Claeys, P., and Pattyn, F.: Physico-chemical properties of the top 120 m of two ice cores in Dronning Maud Land (East Antarctica): an open window on spatial and temporal regional variability of environmental proxies, submitted to Earth System Science Data (ESSD). These new records can be compared to those from other coastal ice cores in DML and to regional or global model results, and represent a great opportunity for further studies addressing the mechanisms behind SMB spatial and temporal variability in East Antarctica. The study was funded in the framework of the Mass2Ant project, contract n° BR/165/A2 by the Belgian Science Policy BELSPO.
DOI: 10.5281/zenodo.8038782
title: Mobile Ocean Bottom Seismometer Instrument (MOBSI) data from Arctic rivers, lakes, and seas

description: We collected the data using the Mobile Ocean Bottom Seismic Instrument (MOBSI). The MOBSI is portable (9 kg) and consists of a watertight, heavy-duty pressure housing (diameter 30 cm, height 35 cm) containing a three-component, broadband seismic sensor. There are three channels (two horizontal and one vertical) recorded by the built-in data logger to monitor ambient seismic noise. Deployed by a steel cable from a small boat or zodiac, the device was lowered to the bottom of the water bodies or the top of the beach area (if present). The device recorded ambient seismic noise for a few minutes before being retrieved and moved to a new location. The steel cable was outfitted with a communications cable, which allowed for live data analysis and quality control via a shipboard monitor. This ensured that the tilt of the instrument was correct (less than 5 degrees) and that the deployment time was sufficient. We stopped data collection when the "real-time" H/V ratio was stable, i.e., not changing with time. For all soundings, the sampling frequency was set to 100 samples per second. The MOBSI data was recorded in an internal RAW format that was converted to MINISeed format. In this paper, we present MOBSI data for seven survey lines from the Russian and the Canadian Arctic. The Banja Lake and Lena River profiles are situated in the Lena Delta, northeastern Siberia, Russia. Ivashkina Lagoon is located along the southern coastline of the Bykovsky Peninsula, northeastern Siberia, Russia. The Tuktoyaktuk profiles are located north of Tuktoyaktuk Island (Northwest Territories, Canada) in the Canadian Beaufort Sea. The survey lines presented in this manuscript are the following:

Profile A-A' (Banja Lake): 8 soundings

Profile B-B' (Banja Lake): 9 soundings

Profile C-C' (Banja Lake): 9 soundings

Profile D-D' (Lena River-Samoylov Island): 9 soundings

Profile E-E' (Lena River-Chay-Tumus): 16 soundings

Profile F-F' (Tuktoyaktuk Island): 10 soundings

Profile G-G' (Tuktoyaktuk Island): 9 soundings

Profile H-H' (Ivashkina Lagoon): 20 soundings

The Excel file "MOBSI_soundings.xlsx" provides an overview of all the soundings, whereby each tab is split by the survey line. The latitude, longitude, water depth, and recording time for each sounding is provided.
DOI: 10.5284/1000232
title: Glass Beads from Anglo-Saxon Graves

description: Birte Brugmann's 'Beads from Anglo-Saxon Graves' digital archive consists of a spreadsheet containing information on 32,000 beads from Anglo-Saxon graves in England of the 5th to 8th centuries. The spreadsheet represents beads of a variety of materials from 106 sites in nine Anglo-Saxon regions and was created as part of Brugmann's 2004 publication 'Glass beads from Early Anglo-Saxon Graves. A study on the provenance and chronology of glass beads from Anglo-Saxon Graves'. The research was carried out with the help of a post-doctoral research grant from the Deutsche Forschungsgemeinschaft.  The spreadsheet is available to download from the website in Excel (.xls) format and can also be viewed online or downloaded as html.
DOI: 10.6084/m9.figshare.25393156
title: Data and Code_Kordon et al. 2024. Factors shaping socio-emotional trajectories in sanctuary-living bonobos: A longitudinal approach

description: This study draws on longitudinal observations in sanctuary-living bonobos to examine how rearing background, sex, and age predict social tendencies like affiliation, consolation, and aggression risk.
DOI: 10.6084/m9.figshare.26388565
title: Vollenweider et al (2024) eLife Raw Data

description: This item contains all the raw data of the paper by Vollenweider et al. (2024) <b>Antimicrobial activity of iron-depriving pyoverdines against human opportunistic pathogens</b> <i>eLife </i><b>13</b>:RP92493<br>https://doi.org/10.7554/eLife.92493.1
DOI: 10.6084/m9.figshare.27108562
title: MAXOMOD OpenModification Search Results

description: Ionbot results from four Mouse models and Human samples. Related to the proteomics dataset: PXD043300
DOI: 10.6084/m9.figshare.27175461
title: Responsive Probes for In Vivo Magnetic Resonance Imaging of Nitric Oxide

description: Nitric oxide (NO), a pivotal signaling molecule, plays multifaceted roles in physiological and pathological processes, including cardiovascular and immune functions, neurotransmission, and cancer progression. Nevertheless, measuring NO in vivo is challenging due to its transient nature and the complexity of the biological environment. Here we describe NO-responsive magnetic probes made of crosslinked superparamagnetic iron oxide nanoparticles tethered to a NO-sensitive cleavable linker for highly sensitive and selective NO magnetic resonance imaging in vivo. These probes enable the detection of NO at concentrations as low as 0.147 μM, allowing for the imaging and quantification of NO in mouse tumor models, studying its effects on tumor progression and immunity, and assessing the response of tumor-associated macrophages to cancer immunotherapeutic agents. Additionally, they facilitate concurrent anatomical and molecular imaging of organs, helping to identify pathological alterations in the liver. Overall, these probes represent promising non-invasive tools for investigating the dose-dependent conflicting role of NO in physiological and pathophysiological processes.
DOI: 10.6084/m9.figshare.27837270
title: Supplementary Material for: Malignant Transformation of Squamous Cell Carcinoma in Mature Cystic Teratoma of the Ovary – A Systematic Review and Meta-Analysis of Data.

description: Background: Mature cystic teratomas (MCT) are the most common neoplasm of the ovary, occurring in 10-20% of women during their lifetimes. MCTs may rarely undergo malignant transformation, of which squamous cell carcinoma is the most common histopathology. This rare malignancy is poorly understood, therefore medical and surgical treatment has yet to be optimized to produce the best outcomes for patients diagnosed with squamous cell carcinoma in MCT (SCC-MCT).
Objectives: To characterize the clinicopathologic features, surgical treatment, adjuvant treatment, and prognosis of SCC-MCT.
Study Design: A systematic literature search was performed using MEDLINE through Ovid and Pubmed for relevant articles on malignant transformation of squamous cell carcinoma in mature cystic teratoma of the ovary. 155 studies were identified, yielding clinical information on 654 unique patients. Univariate and multivariate analyses were performed to assess factors influencing overall survival. Disease-free survival and overall survival of cases with follow-up were assessed by the Kaplan-Meier life-table analysis. Survival rates were assessed with the log-rank test. 
Results: We found that SCC-MCT generally presented in postmenopausal patients with tumor sizes greater than 10 cm. Patients diagnosed with FIGO Stage I disease had better survival than later stage disease, and higher FIGO stage was independently associated with worse overall survival. Longer overall survival was associated with younger age at diagnosis, low pre-operative levels of SCC Ag and CA-125, and treatment with lymphadenectomy. Chemotherapy or radiotherapy were not associated with improved survival.
Conclusions: The prognosis of SCC-MCT is dependent on a variety of factors including age, serum tumor marker levels, and surgical treatment. Prognosis regardless of adjuvant treatment modality chosen for late-stage malignancy is generally poor. Future research focusing on collecting patient outcome data from international centers is needed to better guide treatment choices.
DOI: 10.6084/m9.figshare.28031981
title: Supplementary Material for: Navigating Gynecological Oncology with Different Versions of ChatGPT: A Transformative Breakthrough or the Next Black Box Challenge?

description: Introduction: The study evaluates the performance of large language model (LLM) versions of ChatGPT—ChatGPT-3.5, ChatGPT-4, and ChatGPT-Omni—in addressing inquiries related to the diagnosis and treatment of gynecological cancers, including ovarian, endometrial, and cervical cancers. 
Methods: A total of 804 questions were equally distributed across four categories: True/False, Multiple-Choice, Open-Ended, and Case-scenario, with each question type representing varying levels of complexity. Performance was assessed using a six-point Likert scale, focusing on accuracy, completeness, and alignment with established clinical guidelines. 
Results: For True/False queries, ChatGPT-Omni achieved accuracy rates of 100% for easy, 98% for medium, and 97% for complicated questions, higher than ChatGPT-4 (94%, 90%, 85%) and ChatGPT-3.5 (90%, 85%, 80%) (p=0.041, 0.023, 0.014, respectively). In Multiple-Choice, ChatGPT-Omni maintained superior accuracy with 100% for easy, 98% for medium, and 93% for complicated queries, compared to ChatGPT-4 (92%, 88%, 80%) and ChatGPT-3.5 (85%, 80%, 70%) (p=0.035, 0.028, 0.011). For Open-Ended questions, ChatGPT-Omni had mean Likert scores of 5.8 for easy, 5.5 for medium, and 5.2 for complex levels, outperforming ChatGPT-4 (5.4, 5.0, 4.5) and ChatGPT-3.5 (5.0, 4.5, 4.0) (p=0.037, 0.026, 0.015). Similar trends were observed in Case-Scenario questions, where ChatGPT-Omni achieved scores of 5.6, 5.3, and 4.9 for easy, medium, and hard levels, respectively (p=0.017, 0.008, 0.012).
Conclusions: ChatGPT-Omni exhibited superior performance in responding to clinical queries related to gynecological cancers, underscoring its potential utility as a decision-support tool and an educational resource in clinical practice.
DOI: 10.17882/99231
title: Numerical experiments examining the response of onshore oceanic heat supply to yearly changes in the Amundsen Sea icescape (Antarctica)

description: Satellite images from Antarctica reveal important changes in the coastal icescape (fast-ice, icebergs and ice shelves) but these yearly changes and their impacts on the coastal circulation and ice shelf basal melt rates are not represented in the Earth System Models used to project future sea level rise. The impacts of these yearly icescape changes are thus investigated using a high-resolution regional ocean-ice shelves-sea ice coupled model of the Amundsen Sea (Antarctica). A set of nine semi-idealized experiments were designed to highlight the impacts of (a) the collapse of the Thwaites Glacier Tongue, (b) the disappearance of the Bear Ridge Iceberg Chain and tabular iceberg B22, and (c) presence/absence of a fast-ice cover between Thwaites and Pine Island ice shelves, in both cold and warm background hydrological conditions. The dataset features the results of the nine experiments and reveals changes in sea ice concentrations, coastal oceanic circulation and oceanic heat supply to the ice shelf cavities, ice shelf basal melt rates, hydrological conditions, and fluxes of heat/freshwater at the sea surface. These model results are archived in self-documented NetCDF files with the appropriate metadata for each variable. The dataset includes a 'readme file' providing an overview of the archive as well as additional information regarding the model results.
DOI: 10.21227/w90m-m764
title: Letters of Polish Sign Language Alphabet

description: The dataset contains data obtained by measuring hand movements while performing the letters of the Polish Sign Language alphabet. It contains data from 16 users performing all 36 letters ten times. Each single execution of a gesture is recorded in 75 samples. The experiment also included data augmentation, multiplying the number of data by 200. times.
DOI: 10.1594/pangaea.95744
title: Biogeochemical data from surface sediment at station M53_KG-816
DOI: 10.17632/v3cc2p38hb.1
title: Gene Expression Profiles of Breast Cancer

description: The published dataset consists of four sperate datasets: - BC-TCGA consists of 17,814 genes and 590 samples (including 61 normal tissue samples and 529 breast cancer tissue samples). - GSE2034 includes 12,634 genes and 286 breast cancer samples (including 107 recurrence tumor samples and 179 no recurrence samples). - GSE25066 has 492 breast cancer samples available (including 100 pathologic complete response (PCR) samples and 392 residual disease (RD) samples) and 12,634 genes. - Simulation Data includes 100 positive samples and 100 negative samples with 10,000 features, and each feature in SData follows normal distributions: N(0, 0.1) and N(0 ± r, 0.1) for positive and negative samples, respectively, where r ∈ [−0.125, 0.125]. All of the datasets are used in the experiments in the paper (Comparison among dimensionality reduction techniques based on Random Projection for cancer classification, Xie et al., 2016).
DOI: 10.18150/udx1vq
title: Crystal structures with aspherical atomic scattering factors for the 'beta' polymorph of 1,3-diacetylpyrene

description: The crystal structures of the title compound were determined by means of single-crystal X-ray diffraction at a number of different temperatures (110, 150, 190, 250, 290, 350), using tailor-made, theoretically calculated aspherical atomic scattering factors.The dataset consists of 6 zip files, each one containing:a) the final structure model obtained from X-ray diffraction data at given temperature in crystallographic format (a .cif file)andb) the final set of atomic scattering factors tabularized in a .tscb file.The set of two files together is necessary to automatically repeat the crystal structure refinement by uploading them into Olex2.The list of files:110.zip : structure model and scattering factors determined at 110K150.zip : structure model and scattering factors determined at 150K190.zip : structure model and scattering factors determined at 190K250.zip : structure model and scattering factors determined at 250K290.zip : structure model and scattering factors determined at 290K350.zip : structure model and scattering factors determined at 350K##Structure solution and refinementThe determination of unit cell, data reduction and absorption correction were performed in software provided with the diffractometer - using CrysAlis PRO Version 1.171.39.43d. The structure solution and refinement was performed within Olex2 graphical environment. For the solution ShelXT with intrinsic phasing was used. For refinement ShelXL with least squares. All hydrogen atoms were located in the difference map and refined freely – in cases where free refinement was not possible, the hydrogens were refined as riding on their respective heavy atom.Refinement was performed using NoSpherA2, an implementation of NOn-SPHERical Atom-form-factors in Olex2. (F. Kleemiss et al. Chem. Sci. DOI 10.1039/D0SC05526C - 2021) NoSpherA2 implementation of HAR makes use of tailor-made aspherical atomic form factors calculated on-the-fly from a Hirshfeld-partitioned electron density (ED). The ED was calculated for a single molecule of 1,3-di-acetylpyrene from a gaussian basis set single determinant SCF wavefunction with DFT using the following options:  SOFTWARE:      ORCA 5.0  PARTITIONING:  NoSpherA2  METHOD:        B3LYP  BASIS SET:     6-31G(d,p)  CHARGE:        0  MULTIPLICITY:  1##Model description1,3-di-acetylpyrene "beta" polymorph crystallizes in P21/c space group with one molecule of 1,3-di-acetylpyrene in the asymmetric unit.
DOI: 10.26302/sshade/experiment_op_20201209_001
title: W L3 edge XAS transmission and XAS fluorescence of W reference compounds at 10K

description: fluorescence