cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27262947.v3
title: Graph-based deep learning models for thermodynamic property prediction: The interplay between target definition, data distribution, featurization, and model architecture

description: This folder contains the formation energy of BDE-db, QM9, PC9, QMugs, and QMugs1.1 datasets by filtering (The training, test, and validation sets were randomly split in a ratio of 0.8, 0.1, and 0.1, respectively). The filtered process is described in the article "Graph-based deep learning models for thermodynamic property prediction: The interplay between target definition, data distribution, featurization, and model architecture" and the code can be found at https://github.com/chimie-paristech-CTM/thermo_GNN.After application of the filter procedure described in the article, final versions of the QM9 (127,007 data points), BDE-db (289,639 data points), PC9 (96,634 data points), QMugs (636,821 data points) and QMugs1.1 (70,546 data points) were obtained and used throughout this study.
DOI: 10.6084/m9.figshare.28522598.v1
title: Different _Expression_Genes.xlsx

description: This file contains DEGs of FGR vs Con, VT (villous lineage) vs EVT, and LAB (labyrinth lineage) vs Others.
DOI: 10.17632/3zd529kwj6
title: The complete mitogenome dataset of Hasora Schoenherr (Latreille, 1824) (Lepidoptera: Hesperiidae: Coeliadinae) from Malaysia

description: This dataset described the complete mitochondrial genome of the Yellow Banded Awl skipper, Hasora schoenherr (Lepidoptera: Hesperiidae: Coelidinae) from Malaysia, sequenced using the next-generation sequencing technologies. It has a total length of 15,353bp in length, consisting of 13 protein-coding genes, 22 transfer RNAs, 2 ribosomal rRNAs and a control region. The genomic DNA was extracted from fresh tissue sample of Hasora schoenherr using the Qiagen Blood and Tissue Kit (Qiagen, Valencia, CA) and the library was prepared using NEBNext® Ultra™ II DNA Library Prep Kit for Illumina®. The sample was then sent for sequencing using the Illumina NovaSeq 6000 platform with 150 paired-end mode (PE150). The assembly was done using NOVOPlasty v.4.2 and run through a PALEOMIX BAM pipeline to assess the mitogenome mapping. Annotation was done using the MITOS v2 web server in Galaxy Europe (https://usegalaxy.eu/) and the predicted protein-coding genes were further verified using the Open Reading Frame (ORF) Finder. The annotated mitogenome sequence file was converted into an accepted Genbank format using the GB2sequin web application. The circular mitogenome map was generated using Proksee. The mitogenome is available in Genbank under the accession number PQ149492.
DOI: 10.6084/m9.figshare.21538368.v2
title: Complex model discretization for FDTD

description: Scripts, data files, and additional documentation to support the discretization of complex 3D biological models into a format compatible with FDTD simulations using MEEP.
DOI: 10.6084/m9.figshare.27800382.v1
title: Community-level root trait, environmental data and R codes.xlsx

description: To uncover the pattern of root trait space at the community-level and their driving factors, we selected two typical grasslands in China, i.e., the Inner Mongolian Plateau (IMP) and the Tibetan Plateau (TP), where plant growth is predominantly limited by water and low temperature, respectively. Ten sampling sites from east to west in each region were set up and nine community-level root quantity and efficiency traits were determined. The root traits were calculated using three alternative upscaling approaches, and were grouped into two datasets, including four root quantity traits and five root foraging and uptake efficiency traits estimated from the pooled-species approach or CWM approach, respectively. Specifically, root quantity traits include total root mass (RM_A), root length (RL_A), root area (RA_A), and root nitrogen content per unit land area (RN_A). Root efficiency traits include the pooled-species values of mean root diameter (RD_M), specific root length (SRL_M), specific root area (SRA_M), root tissue density (RTD_M), root nitrogen concentration (RN_M); and CWM values of root diameter (RD_CWM), specific root length (SRL_CWM), specific root area (SRA_CWM)), root tissue density (RTD_CWM), root nitrogen concentration (RN_CWM). Climatic and soil variables (0–30 cm depth) were used to determine the environmental effects on variation in community-level root traits.
DOI: 10.4121/uuid:d77e74b0-66bc-47ac-8b25-5796d3084478
title: The Spotify Audio Features Hit Predictor Dataset (1960-2019)

description: This is a dataset consisting of features for tracks fetched using Spotify's Web API. The tracks are labeled '1' or '0' ('Hit' or 'Flop') depending on some criterias of the author. This dataset can be used to make a classification model that predicts whethere a track would be a 'Hit' or not. (Note: The author does not objectively considers a track inferior, bad or a failure if its labeled 'Flop'. 'Flop' here merely implies that it is a track that probably could not be considered popular in the mainstream.) Here's an implementation of this idea in the form of a website that I made. {http://www.hitpredictor.in/}
DOI: 10.6084/m9.figshare.3555180.v1
title: Appendix A. Bird–fruit interaction web from the North Island of New Zealand.

description: Bird–fruit interaction web from the North Island of New Zealand.
DOI: 10.6084/m9.figshare.8342978.v1
title: PD-L1 and CD47 scoring

description: Table scoring PD-L1 and CD47 intensity and %TC expression
DOI: 10.17632/x9yvhptfbj
title: Oxidation of petrogenic organic carbon in a large river-dominated estuary

description: Table 1 shows the total organic carbon content (TOC), radiocarbon activity (∆14C), Fraction modern carbon (F14C) data for surface sediment samples from the East China Sea (n = 255).  Using a binary mixing moldel of Modern OC (F14C * OC) versus OC, we found relatively low petrogenic OC concentrations of marine sediments in the East China Sea compared to riverine sediments, probably suggesting a significant oxidation of petrogenic OC during sediment transfer to the coastal ocean.
DOI: 10.6084/m9.figshare.24926256.v3
title: Dataset/RCode Weltwald phenology

description: This dataset of phenology and functional traits of 74 tree species in Weltwald Freising, Germany, and the R code regarding the extraction of the phenological metrics belong to the paper "The linkage between functional traits and drone-derived phenology of 74 Northern Hemisphere tree species", which is published <i>Science of The Total Environment</i> (DOI: https://doi.org/10.1016/j.scitotenv.2024.175753).
DOI: 10.17632/nswfpphxpn
title: Data for: Relationship between pro-environmental attitudes, behaviour and dietary intake patterns

description: Results of the survey on environmental attitudes and behaviours, as well as a copy of the survey form
DOI: 10.25452/figshare.plus.22904597.v1
title: Dataset supporting Figure 6: Power of y1000+

description: <strong>Organisms exhibit extensive variation in ecological niche breadth, from very narrow (specialists) to very broad (generalists). Paradigms proposed to explain this variation either invoke trade-offs between performance efficiency and breadth or underlying intrinsic or extrinsic factors. We assembled genomic (1,154 yeast strains from 1,090 species), metabolic (quantitative measures of growth of 843 species in 24 conditions), and ecological (environmental ontology of 1,088 species) data from nearly all known species of the ancient fungal subphylum Saccharomycotina to examine niche breadth evolution. We found large interspecific differences in carbon breadth stem from intrinsic differences in genes encoding specific metabolic pathways but no evidence of trade-offs and a limited role of extrinsic ecological factors. These comprehensive data argue that intrinsic factors driving microbial niche breadth variation.</strong>
<br>
This item includes raw and underlying data associated with Figure 5 in the manuscript. 
<br>
These items were used to assess differences in pathogenicity between generalist and specialist yeasts. 
<br>
Each item (when appropriate) includes a README.txt file that includes specific information about the analysis, file structure, and folder structure. 
<br>

 <strong> y1000p_growth_at_37.xlsx </strong>- Excel file that categorizes each of the species as being able to grow at 37C or not. Column names are: assembly_fullID_updated, at_37_C, and Temp_Source. 

         -<em> assembly_fullID_updated</em> - the assemblyID of each species analyzed
         - <em>at_37_C </em>- growth at 37 including Y (yes), N (no), W (weak), V (variable), S (slow)
         - <em>Temp_Source </em>- the resource that was used to identify growth or no growth including the Yeast Book     (Kurtzman CP, Fell JW, Boekhout T, editors. The yeasts: a taxonomic study. Elsevier; 2011 May 9.) and the CBS database (https://wi.knaw.nl/fungal_table)
<br>

  <strong>y1000p_HSP_seqs.zip </strong>- HSP annotation information used in Figure 6

<br>
DOI: 10.17605/osf.io/ju594
title: Data for: Deep learning-based detector of invasive alien frogs, Polypedates leucomystax and Rhinella marina, on an island at invasion front

description: Data for Kimura, K., I. Fukuyama, and K. Fukuyama. "Deep learning-based detector of invasive alien frogs, Polypedates leucomystax and Rhinella marina, on an island at invasion front"
DOI: 10.17632/66xspychhw
title: Supraacetabular Corridor Data

description: This study seeks to define the dimensions, common constriction points, and any alternative trajectories that would maximize the corridor diameter. Computed tomography of 100 male and 100 female hemipelves without osseous trauma were evaluated. The corridor boundaries were determined through manual best-fit analysis. The largest intercortical cylinder within the pathway was created and measured. Alternative trajectories were tested within the SA boundaries to identify another orientation that maximized the diameter of the intercortical cylinder. The traditional SA corridor had a mean diameter of 8.3 mm in men and 6.2 mm in women. This difference in diameter is due to a more S-shaped ilium in women. A larger alternative SA corridor was found that had a less limited path through the ilium and measured 11.3 mm in men and 9.9 mm in women. These dimensions are significantly different compared to those of the traditional SA corridor in both men and women.
DOI: 10.17632/j4yc7xmjby
title: Librarian job titles at community colleges in Canada - an examination

description: Academic librarian job titles have historically been associated with the department or subject area that the librarian serves. Job titles such as “Business Librarian” or “Nursing Librarian” are common for subject librarians. University libraries have seen a shift in job titles toward functional area (e.g. Outreach Librarian)  instead of subject area. The data presented here are an examination of librarian job titles in 2019 at community college libraries in Canada as presented on library websites. The content analysis includes information about the size of the student population and what titles are most prevalent for librarians with a functional areas job title. This work is meant to show patterns in librarian job titles in community colleges in Canada.
DOI: 10.6084/m9.figshare.14044220.v1
title: Pediatric EEG Data & Analyses in High Gamma Band from Boston Children's Hospital

description: Analyses on 10 pediatric patients with intractable seizures based on data collected at the Boston Children's hospital using signal processing techniques to create ERP images via EEGLAB, a MATLAB toolbox. Data was extracted to Excel.
DOI: 10.6084/m9.figshare.27198549.v1
title: Script and datasets for Mercier et al.

description: Script and datasets used to test hypotheses in Mercier et al
DOI: 10.6084/m9.figshare.7673669.v1
title: EAP18-0580.R1 - code and data.zip

description: <b>Data and code to reproduce the analysis in Hauenstein, S., J. Fattebert, M. Grüebler, B. Naef-Daenzer, G. Pe'er and F. Hartig. 2019. Calibrating an individual-based movement model to predict functional connectivity for little owls. <i>Ecological Applications</i></b><i><br></i><b>Fileset structure:</b><br>- folder 'code' contains all R scripts and functions to reproduce the environmental data manipulation and the analysis- 'LOSim' is an R package acting as interface to the IBM coded in c++. This R package can also be installed from GitHub: https://github.com/shauenstein/Anoctua<br>- 'data' contains the raw data as provided by the Swiss Ornithologial Institute. Additional meta data has to be requester there. 'data' also contains 'gpsUD.csv', which contains the utility distribution data used to predict habitat suitability.<br>- 'envVars' only contains the estimated habitat suitability grid, which is necessary to run the IBM ('LOSim'). Additional environmental data has to be downloaded or requested from the sources referenced in the bibliography of the paper this repository is linked to.
DOI: 10.17632/hwsf3z853p
title: Exposure to dietary glycidyl and 3-MCPD fatty acid esters and associated burden of cancer in selected Asian and European countries: A review and data synthesis

description: In this supplementary file, we used three variables to estimate dietary GE and 3-MCPDE exposure: toxicant concentration in food, mass of food consumed per day, and body weight. We then calculated the cancer risk of dietary GE exposure as years of life lost (YLL) and years lived with disability (YLD). We obtained the average YLL per person (YLLpp) of breast, lung and colorectal cancers for the five-year period by dividing the total YLL of each cancer by its mortality rate. Likewise, we obtained the average YLD per person (YLDpp) of each cancer by dividing the total YLD of each cancer by its prevalence rate. Finally, we computed the dietary GE attributable fraction and rate (per 100,000 persons) of the YLL and YLD of each cancer.
DOI: 10.6084/m9.figshare.25404400.v1
title: 文章数据集（mlp）

description: This is a dataset from a mulberry leaf powder retention experiment
DOI: 10.6084/m9.figshare.7482200.v1
title: GRL_data_2018GL081275

description: This is source data and computer model codes submitted to Geophysical Research Letters by Tian et al. (2018GL081275) , entitled "A positive feedback onto ENSO due to tropical instability wave (TIW)-induced chlorophyll effects in the Pacific". If you any question, please contact us (tianfeng777@hotmail.com)
DOI: 10.17632/49799kh6kz
title: Disclosing and Cooling-Off: An Analysis of Insider Trading Rules

description: The code in this replication package constructs the analysis for the paper, “Disclosing and Cooling-Off: An Analysis of Insider Trading Rules”. Five main Matlab programs run all of the code to generate the four figures (Figures 2-5) and one table (Table 1) in the paper. 

Description of programs/code
 Step 1：Program in &lt;1. Calibration_Parameters.zip&gt; calibrates the insider’s hedge need Σ_z and the noiser trader’s hedge need Σ_u in Table 1.
 Step 2：Programs in &lt;2. Baseline_model.zip&gt; plot Figures 2 and 3 for the baseline model. 
 Step 3：Programs in &lt;3. Information_leakage_model.zip&gt; plot Figures 4 and 5 for the information leakage model. 

The replicator would run Step 1 first to get the calibration parameters that are the input for Step 2 and Step 3.
DOI: 10.6084/m9.figshare.12030318.v1
title: TCGARNA-seq

description: RNA-seq data from all patients 30+ years of age at diagnosis in TCGA
DOI: 10.6084/m9.figshare.8852168.v1
title: RAW data.sav

description: Raw data exported from Qualtrics after gaining ethical approval for the study via the university.
DOI: 10.17632/8pxgdp7cn7
title: Experimental data of wind pressures on the Space Needle

description: Building codes worldwide rely on wind tunnel tests of scale models to characterize peak wind loads. Numerous previous studies have identified shortcomings associated with scaled testing in an idealized inflow. Gathering absolute pressure data on a real-world high rise building unlocks better understanding of peak loading. 

This dataset contains over 1000 hours of pressure time series obtained on the roof of the Space Needle, an 184 m tall observation deck in Seattle, WA. The data shows how full-scale measurements can be used to generate insights into peak pressures and their dependence on approach wind characteristics. The measurements reveal a windward separation region with strong dependency of the approach wind turbulence on the pressure statistics, but positive skewness limits the peak values. The skewness becomes negative near the edge of a second, leeward separation region, resulting in peak factors up to 2-3 times larger than the North American code-prescribed value of 3.4.

Measurements were obtained with absolute sensors onboard a network of custom dataloggers, together with anemometers to characterize wind. Reference pressure and accelerometer measurements are also supplied. Both raw time series and processed Cp statistics for 10-minute intervals are included here. Refer to README.md for a detailed description of the data.
DOI: 10.17632/zyc4vw5w6d
title: Tmax for "Cumulative Heatwaves Accelerated Ozone Buildup in China" (You et al. 2025; submitted to GRL)

description: Daily maximum temperature data were sourced from the CN05.1 climate dataset. The dataset offers a spatial resolution at 0.25° and includes daily observational data from over 2,400 meteorological stations across China (Wu & Gao, 2013; Xu et al., 2009).
DOI: 10.6084/m9.figshare.29196002.v2
title: FastCoder

description: Supplementary material for [FASTCODER: Accelerating Code Generation via Efficient Retrieval and Parallel Verification]
DOI: 10.6084/m9.figshare.6122249.v2
title: Annotations of Henosepilachna vigintioctopunctata unigenes

description: Annotations of Henosepilachna vigintioctopunctata unigenes
DOI: 10.17632/4w2vp9bcmn
title: Isometric handgrip training, but not a single session, reduces blood pressure in individuals with hypertension: a systematic review and meta-analysis

description: Aerobic exercise is a leading strategy for the prevention/management of systemic arterial hypertension, but other modalities of exercise have also been explored. Thus, we examine the acute effect of isometric handgrip exercise (IHGE) and the chronic effect of isometric handgrip training (IHGT) on systolic blood pressure (SBP) and diastolic blood pressure (DBP) in individuals with hypertension. We conducted a systematic review with meta-analysis of randomized controlled trials (RCTs) involving adults with hypertension. We searched the electronic databases MEDLINE (PubMed), Cochrane, Web of Science, LILACS, EMBASE and PEDro. We used random-effects model for the analyses, RoB2 tool to assess the risk of bias, and GRADE to assess the strength of evidence.
DOI: 10.17632/ttgdhfm4gf
title: Immunogenicity and vaccine efficacy of Actinobacillus pleuropneumoniae-derived extracellular vesicles as a novel vaccine candidate

description: Actinobacillus pleuropneumoniae (APP) is a significant pathogen in the swine industry, leading to substantial economic losses and highlighting the need for effective vaccines. This study evaluates the potential of APP-derived extracellular vesicles (APP-EVs) as a vaccine candidate compared to the commercial Coglapix vaccine. APP-EVs, isolated using tangential flow filtration (TFF) and cushioned ultracentrifugation, exhibited an average size of 105 nm and a zeta potential of -17.4 mV. These EVs demonstrated high stability under external stressors, such as pH changes and enzymatic exposure and were found to contain 86 major metabolites. Additionally, APP-EVs induced dendritic cell (DC) maturation in a Toll-like receptor 4 (TLR4)-dependent manner without cytotoxicity. APP-EVs predominantly elicited Th1-mediated IgG responses in immunized mice without significant liver and kidney toxicity. Contrarily, unlike Coglapix, which induced stronger Th2-mediated responses and notable toxicity. In addition, APP-EVs triggered robust APP-specific Th1, Th17, and cytotoxic T lymphocyte (CTL) responses and promoted the activation of multifunctional T-cells. Notably, APP-EV immunization enhanced macrophage phagocytosis and improved survival rates in mice challenged with APP infection compared to those treated with Coglapix. These findings suggest that APP-EVs are promising vaccine candidates, capable of inducing potent APP-specific T-cell responses, particularly Th1, Th17, CTL, and multifunctional T-cells, thereby enhancing the protective immune response against APP infection.
DOI: 10.6084/m9.figshare.17088328.v1
title: Additional file 2 of Soil-transmitted helminths, intestinal protozoa and Clonorchis sinensis infections in southeast China

description: Additional file 2: Study sites in urban area.
DOI: 10.6084/m9.figshare.3518681.v1
title: Appendix A. List of understory vascular plant species by seral status.

description: List of understory vascular plant species by seral status.
DOI: 10.6084/m9.figshare.23659122.v1
title: <strong>HDLNET: A Hybrid Deep Learning Network Model with Intelligent IOT for Detection and Classification of Chronic Kidney Disease</strong>

description: The proposed approach competes with and even exceeds existing approaches in the literature while executing in a minimum amount of time with beneficial accuracy when classifying. The clustering approach will be used in further research studies to improve the effectiveness of categorization and reduce instances of incorrect categorization.
DOI: 10.6084/m9.figshare.26174518.v1
title: GeMoMa_final_annotation.gff3

description: Chromosome-level genome assembly of the morabine grasshopper Vandiemenella viatica race 19. The project includes a gene annotation file and a RepeatMasker annotation file for viatica19. Raw reads and the assembly for this project can be accessed on NCBI under PRJNA1111711.
DOI: 10.15468/dl.7tgftv
title: Occurrence Download

description: A dataset containing 283 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Portulaca hirsutissima Cambess.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 283 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013317-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/sghk2hgdmb
title: Data for measuring disaster adaptation among students in disaster-prone areas of Mount Merapi

description: The data was carried out among senior high school students in disaster-prone areas of Mount Merapi, assessing socio-demographic information, behavioral adaptation, and psychological adaptation. 364 respondents from 15 schools through online survey via Google Form.
DOI: 10.6084/m9.figshare.20464254.v2
title: Emihu2 data files

description: Genome, transcriptome and proteome level data relating to the Skeffington et al Emiliania huxleyi proteomics paper. See README file in the archive as well as the pre-print / publication for details.