cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27248102
title: Clioquinol influences cell membrane, attenuates virulence factors, induces apoptosis to inhibit <i>Candida albicans</i> growth

description: <b>Aim:</b> To investigate the antifungal mechanism of clioquinol and indicate that clioquinol has potential as a novel therapeutic antifungal agent. <b>Materials & methods:</b> Analyze differentially expressed genes of <i>Candida albicans</i> treated with clioquinol using RNA-sequencing. The effects on cell wall and membrane features, virulence factors, apoptosis-induced cell death were also investigated. <b>Results:</b> The differentially expressed genes of <i>C. albicans</i> after treated with clioquinol focused on cell wall and membrane synthesis, antioxidant system and energy metabolism. Clioquinol did not change cell wall components levels while it decreased squalene epoxidase activity to influence the ergosterol biosynthesis in cell membrane. It also decreased cellular surface hydrophobicity and induced β-glucan unmasking to attenuate virulence factors. Meanwhile, clioquinol influenced enzyme activities involved in antioxidant system, citrate cycle, oxidative phosphorylation and decreased the ATP levels. Clioquinol induced apoptosis in <i>C. albicans</i> to exert its fungicidal activity. It induced reactive oxygen species and calcium ion elevation, leading to loss of mitochondrial membrane potential, cytochrome C release, metacaspase activation, thereby triggering apoptosis. <b>Conclusion:</b> Clioquinol exerted anti-<i>C. albicans</i> activity through influencing cell membrane, attenuating virulence factors and inducing apoptosis. Clioquinol changed gene expressions involved in cell wall and membrane synthesis, antioxidant system and energy metabolism in <i>Candida albicans</i>. Clioquinol influenced the ergosterol biosynthesis in cell membrane and attenuated virulence factors in <i>C. albicans</i>. Clioquinol influenced gene expressions and enzyme activities involved in antioxidant system, citrate cycle and oxidative phosphorylation. Meantime it decreased the ATP levels. Clioquinol induce apoptosis in <i>C. albicans</i> through influencing reactive oxygen species and calcium ion levels. The study provided more evidences for the antifungal mechanism of clioquinol. Clioquinol emerges as promising candidates for the development of novel antifungal therapies.
DOI: 10.6084/m9.figshare.27248102.v1
title: Clioquinol influences cell membrane, attenuates virulence factors, induces apoptosis to inhibit <i>Candida albicans</i> growth

description: <b>Aim:</b> To investigate the antifungal mechanism of clioquinol and indicate that clioquinol has potential as a novel therapeutic antifungal agent. <b>Materials & methods:</b> Analyze differentially expressed genes of <i>Candida albicans</i> treated with clioquinol using RNA-sequencing. The effects on cell wall and membrane features, virulence factors, apoptosis-induced cell death were also investigated. <b>Results:</b> The differentially expressed genes of <i>C. albicans</i> after treated with clioquinol focused on cell wall and membrane synthesis, antioxidant system and energy metabolism. Clioquinol did not change cell wall components levels while it decreased squalene epoxidase activity to influence the ergosterol biosynthesis in cell membrane. It also decreased cellular surface hydrophobicity and induced β-glucan unmasking to attenuate virulence factors. Meanwhile, clioquinol influenced enzyme activities involved in antioxidant system, citrate cycle, oxidative phosphorylation and decreased the ATP levels. Clioquinol induced apoptosis in <i>C. albicans</i> to exert its fungicidal activity. It induced reactive oxygen species and calcium ion elevation, leading to loss of mitochondrial membrane potential, cytochrome C release, metacaspase activation, thereby triggering apoptosis. <b>Conclusion:</b> Clioquinol exerted anti-<i>C. albicans</i> activity through influencing cell membrane, attenuating virulence factors and inducing apoptosis. Clioquinol changed gene expressions involved in cell wall and membrane synthesis, antioxidant system and energy metabolism in <i>Candida albicans</i>. Clioquinol influenced the ergosterol biosynthesis in cell membrane and attenuated virulence factors in <i>C. albicans</i>. Clioquinol influenced gene expressions and enzyme activities involved in antioxidant system, citrate cycle and oxidative phosphorylation. Meantime it decreased the ATP levels. Clioquinol induce apoptosis in <i>C. albicans</i> through influencing reactive oxygen species and calcium ion levels. The study provided more evidences for the antifungal mechanism of clioquinol. Clioquinol emerges as promising candidates for the development of novel antifungal therapies.
DOI: 10.15468/dl.htt2pw
title: Occurrence Download

description: A dataset listing the 325 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((122.79695 -2.29182,124.18564 -2.29182,124.18564 -1.46886,122.79695 -1.46886,122.79695 -2.29182))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 325 records were derived from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006772-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.78vtf2
title: Occurrence Download

description: A dataset containing 148 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Takifugu snyderi (Abe, 1988)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 148 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006782-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vux9u6
title: Occurrence Download

description: A dataset containing 23534 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Commelina communis L.",
 {
 "or" : [
 "Year 1960-1974",
 "Year 2009-2024"
 ]
 }
 ]
}

 The dataset includes 23534 records from 319 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006781-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n345r7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fugu vermicularis (Temminck & Schlegel, 1850)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006784-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.27930927
title: Summary results

description: Summary results (29 species and 29 genome accessions)
DOI: 10.6084/m9.figshare.27930927.v1
title: Summary results

description: Summary results (29 species and 29 genome accessions)
DOI: 10.25592/uhhfdm.14829
title: Die Einträge im Musikalbum von Louise Langhans, geb. Japha

description: This table provides an overview of and some information on the contributors and their entries in the music album of the pianist, composer and piano teacher Louise Langhans, née Japha (1826 – 1910). These range from prominent figures such as Johannes Brahms to less recognised composers such as Clara von Goßler and Auguste Leo. The album is privately owned in Freiburg im Breisgau, but was made available as part of the project ‘Creating Music Albums as Originals Made of Originals' at the Centre for the Study of Manuscript Cultures at the University of Hamburg. The images are accessible at http://doi.org/10.25592/uhhfdm.10771.
description: The research for this project was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research
Foundation) under Germany's Excellence Strategy – EXC 2176 'Understanding Written Artefacts: Material, Interaction and Transmission in Manuscript Cultures', project no. 390893796. The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at Universität Hamburg.
DOI: 10.5281/zenodo.14244860
title: Supplementary material for "Tracing emerging contaminants from the Baltic Sea and North Sea in fjord waters in southern Norway with rare earth elements as far-field tracers"

description: Dataset presented and discussed in the manuscript of the research article “Tracing emerging contaminants from the Baltic Sea and North Sea in fjord waters in southern Norway with rare earth elements as far-field tracers” by Zocher et al. The manuscript will be submitted to Environmental Pollution and was prepared by the following authors: 

 

Anna-Lena Zocher (1), Tomasz Maciej Ciesielski (2,3), Stefania Piarulli (4), Julia Farkas (4) and Michael Bau (1). 

 

(1) School of Science, Constructor University, Bremen, Germany

(2) Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway

(3) Department of Arctic Technology, The University Centre in Svalbard (UNIS), Longyearbyen, Norway

(4) SINTEF Ocean, Trondheim, Norway

 

This work was conducted within the ELEMENTARY project, and we appreciate funding from the Norwegian Research Council (grant No. 301236).
DOI: 10.5281/zenodo.14244861
title: Supplementary material for "Tracing emerging contaminants from the Baltic Sea and North Sea in fjord waters in southern Norway with rare earth elements as far-field tracers"

description: Dataset presented and discussed in the manuscript of the research article “Tracing emerging contaminants from the Baltic Sea and North Sea in fjord waters in southern Norway with rare earth elements as far-field tracers” by Zocher et al. The manuscript will be submitted to Environmental Pollution and was prepared by the following authors: 

 

Anna-Lena Zocher (1), Tomasz Maciej Ciesielski (2,3), Stefania Piarulli (4), Julia Farkas (4) and Michael Bau (1). 

 

(1) School of Science, Constructor University, Bremen, Germany

(2) Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway

(3) Department of Arctic Technology, The University Centre in Svalbard (UNIS), Longyearbyen, Norway

(4) SINTEF Ocean, Trondheim, Norway

 

This work was conducted within the ELEMENTARY project, and we appreciate funding from the Norwegian Research Council (grant No. 301236).
DOI: 10.25318/3710027501-eng
title: Postsecondary enrolments, by detailed field of study and International Standard Classification of Education

description: The number of postsecondary enrolments, by Classification of Instructional Programs (CIP) 2021 (2 and 4 digit series), International Standard Classification of Education (ISCED), institution type, registration status and gender.
DOI: 10.5281/zenodo.14245252
title: rhinella_marina_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.14245253
title: rhinella_marina_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.13329624
title: Zinc Doped Zeolite 13X DIAD X-Ray Computed Tomography -  0.54 micron pixel size RAW

description: This repository contains raw data for the zinc-doped zeolite 13X sample imaged on the DIAD beamline at Diamond Light Source. Data is stored as a .nxs file which can be loaded using ImageJ/Fiji. The size of this dataset is 2510x2510x2110 with a pixel-size of 0.54 microns. A script containing the savu process list and code used to perform the 3D reconstruction is provided.

A detailed data descriptor pre-print can be found at https://arxiv.org/abs/2409.07322#

 

The size of the .h5 file is >50GB and cannot be downloaded from the browser. It is recommended to use a terminal to download the data using the 'curl' or 'wget' command. To generate a file url, right-click the 'Download' button for the dataset you want to download and select 'Copy Link. Enter the following command in your terminal to download the dataset:



curl dataset_url > 43334_raw.h5


Please replace dataset_url with the url you copied.
DOI: 10.5281/zenodo.13349401
title: Zinc Doped Zeolite 13X DIAD X-Ray Computed Tomography -  0.54 micron pixel size

description: This repository contains processed data for the zinc-doped zeolite 13X sample imaged on the DIAD beamline at Diamond Light Source. Data is stored as a .nxs file which can be loaded using ImageJ/Fiji. The size of this dataset is 2510x2510x2110 with a pixel-size of 0.54 microns. A script containing the savu process list and code used to perform the 3D reconstruction is provided.

A detailed data descriptor pre-print is available at https://arxiv.org/abs/2409.07322#

The size of the .h5 file is >50GB and cannot be downloaded from the browser. It is recommended to use a terminal to download the data using the 'curl' or 'wget' command. To generate a file url, right-click the 'Download' button for the dataset you want to download and select 'Copy Link. Enter the following command in your terminal to download the dataset:



curl dataset_url > 43334_recon.h5


Please replace dataset_url with the url you copied.
DOI: 10.5281/zenodo.14245277
title: sclerophrys_maculata_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.14245278
title: sclerophrys_maculata_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.14245019
title: Data and Models of Thermal Density Currents Research in Daheiting Reservoir

description: This database includes the field measurement results from cruise surveys, profile observations, and benthic observations in the Daheiting Reservoir, along with the retrospective model and the average-year model. These data and models are used to study the oxygenation benefits of thermal density currents and their regulation measures.
DOI: 10.5281/zenodo.14245020
title: Data and Models of Thermal Density Currents Research in Daheiting Reservoir

description: This database includes the field measurement results from cruise surveys, profile observations, and benthic observations in the Daheiting Reservoir, along with the retrospective model and the average-year model. These data and models are used to study the oxygenation benefits of thermal density currents and their regulation measures.
DOI: 10.5281/zenodo.13327960
title: Zinc Doped Zeolite 13X I13-2 X-Ray Computed Tomography -  0.325 micron pixel size RAW

description: This repository contains raw data for the zinc-doped zeolite 13X sample imaged on the I13-2 beamline at Diamond Light Source. Raw data at a pixel-size of 0.325 microns is stored as a .nxs file, and a savu process list is provided to perform the reconstruction we used to reproduced the reconstructed data.

This data is one of four resolutions obtained.

A detailed data descriptor pre-print is available at https://arxiv.org/abs/2409.07322#

The size of the .hdf file is >50GB and cannot be downloaded from the browser. It is recommended to use a terminal to download the data using the 'curl' or 'wget' command. To generate a file url, right-click the 'Download' button for the dataset you want to download and select 'Copy Link. Enter the following command in your terminal to download the dataset:



curl dataset_url > 169065_raw.hdf


Please replace dataset_url with the url you copied.
DOI: 10.5281/zenodo.13327957
title: Zinc Doped Zeolite 13X I13-2 X-Ray Computed Tomography - 0.8125 micron pixel size RAW

description: This repository contains raw data for the zinc-doped zeolite 13X sample imaged on the I13-2 beamline at Diamond Light Source. Raw data at a pixel-size of 0.8125 microns is stored as a .nxs file, and a savu process list is provided to perform the reconstruction we used to reproduced the reconstructed data.

This data is one of four resolutions obtained.

A detailed data descriptor pre-print is available at https://arxiv.org/abs/2409.07322#

The size of the .hdf file is >50GB and cannot be downloaded from the browser. It is recommended to use a terminal to download the data using the 'curl' or 'wget' command. To generate a file url, right-click the 'Download' button for the dataset you want to download and select 'Copy Link. Enter the following command in your terminal to download the dataset:



curl dataset_url > 169066_raw.hdf


Please replace dataset_url with the url you copied.
DOI: 10.5281/zenodo.13327930
title: Zinc Doped Zeolite 13X I13-2 X-Ray Computed Tomography -  1.625 micron pixel size RAW

description: This repository contains raw data for the zinc-doped zeolite 13X sample imaged on the I13-2 beamline at Diamond Light Source. Raw data at a pixel-size of 1.625 microns is stored as a .nxs file, and a savu process list is provided to perform the reconstruction we used to reproduced the reconstructed data.

This data is one of four resolutions obtained.

A detailed data descriptor pre-print is available at https://arxiv.org/abs/2409.07322#

The size of the .hdf file is >50GB and cannot be downloaded from the browser. It is recommended to use a terminal to download the data using the 'curl' or 'wget' command. To generate a file url, right-click the 'Download' button for the dataset you want to download and select 'Copy Link. Enter the following command in your terminal to download the dataset:



curl dataset_url > 169067_raw.hdf


Please replace dataset_url with the url you copied.
DOI: 10.5281/zenodo.13327890
title: Zinc Doped Zeolite 13X I13-2 X-Ray Computed Tomography -  2.6 micron pixel size RAW

description: This repository contains raw data for the zinc-doped zeolite 13X sample imaged on the I13-2 beamline at Diamond Light Source. Raw data at a pixel-size of 2.6 microns is stored as a .nxs file, and a savu process list is provided to perform the reconstruction we used to reproduced the reconstructed data.

This data is one of four resolutions obtained.

A detailed data descriptor pre-print is available at https://arxiv.org/abs/2409.07322#

The size of the .hdf file is >50GB and cannot be downloaded from the browser. It is recommended to use a terminal to download the data using the 'curl' or 'wget' command. To generate a file url, right-click the 'Download' button for the dataset you want to download and select 'Copy Link. Enter the following command in your terminal to download the dataset:



curl dataset_url > 169068_raw.hdf


Please replace dataset_url with the url you copied.
DOI: 10.15468/dl.pn99y8
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Buccinum isaotakii Kira, 1959",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 76 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006785-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.chb7an
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Morpho cypris Westwood",
 "Year 2020-2024"
 ]
}

 The dataset includes 28 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006789-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.69f29j
title: Occurrence Download

description: A dataset containing 555 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((122.79695 -2.29182,124.18564 -2.29182,124.18564 -1.46886,122.79695 -1.46886,122.79695 -2.29182))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 555 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006787-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10689646
title: Dataset for Direct visualization of quasiparticle concentration around superconducting vortices

description: Data for Jian-Feng Ge, et al. “Direct visualization of quasiparticle concentration around superconducting vortices”.

The following data files are used for the following figures.

    Fig. 1        a    Illustration figure, no data used            b    qeff_vs_y_sim.py

    Fig. 2        a    NbSe2_04_220202_0189.txt            b    NbSe2_05_220503_dIdV_0017.txt                  NbSe2_07_220822_dIdV_0045.txt            c    220210_NbSe2_04_2.3K_map_03.txt            d    220824_NbSe2_07_2.3K_spectrum_01.txt                  220910_NbSe2_07_2.3K_spectrum_06.txt            e    220210_NbSe2_04_2.3K_map_03_qeff.txt            f     220824_NbSe2_07_2.3K_spectrum_01_qeff.txt                  220910_NbSe2_07_2.3K_spectrum_06_qeff.txt

    Fig. 3        a    NbSe2_04_220202_0180.txt            b    220210_NbSe2_04_2.3K_map_01_Rdyn.txt            c    220210_NbSe2_04_2.3K_map_01_noise.txt            d    NbSe2_04_220202_0180_radave.txt            e   220210_NbSe2_04_2.3K_map_01_Rdyn_radave.txt            f    220210_NbSe2_04_2.3K_map_01_noise_radave.txt

    Fig. 4        a    220824_NbSe2_07_2.3K_map_01.txt            b    220824_NbSe2_07_2.3K_map_01_cuts.txt            c    qmax_vs_B.txt
DOI: 10.5281/zenodo.10689647
title: Dataset for Direct visualization of quasiparticle concentration around superconducting vortices

description: Data for Jian-Feng Ge, et al. “Direct visualization of quasiparticle concentration around superconducting vortices”.

The following data files are used for the following figures.

    Fig. 1        a    Illustration figure, no data used            b    qeff_vs_y_sim.py

    Fig. 2        a    NbSe2_04_220202_0189.txt            b    NbSe2_05_220503_dIdV_0017.txt                  NbSe2_07_220822_dIdV_0045.txt            c    220210_NbSe2_04_2.3K_map_03.txt            d    220824_NbSe2_07_2.3K_spectrum_01.txt                  220910_NbSe2_07_2.3K_spectrum_06.txt            e    220210_NbSe2_04_2.3K_map_03_qeff.txt            f     220824_NbSe2_07_2.3K_spectrum_01_qeff.txt                  220910_NbSe2_07_2.3K_spectrum_06_qeff.txt

    Fig. 3        a    NbSe2_04_220202_0180.txt            b    220210_NbSe2_04_2.3K_map_01_Rdyn.txt            c    220210_NbSe2_04_2.3K_map_01_noise.txt            d    NbSe2_04_220202_0180_radave.txt            e   220210_NbSe2_04_2.3K_map_01_Rdyn_radave.txt            f    220210_NbSe2_04_2.3K_map_01_noise_radave.txt

    Fig. 4        a    220824_NbSe2_07_2.3K_map_01.txt            b    220824_NbSe2_07_2.3K_map_01_cuts.txt            c    qmax_vs_B.txt
DOI: 10.15468/dl.g3tukh
title: Occurrence Download

description: A dataset containing 10100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Phyllanthus urinaria L.",
 "Year 1960-2024"
 ]
}

 The dataset includes 10100 records from 287 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006786-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14245315
title: siphlophis_compressus_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.14245316
title: siphlophis_compressus_zanfona_1.fasta.gz
DOI: 10.15468/dl.g4z5nf
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Côte d’Ivoire",
 "DatasetKey is Données d'occurrence de quelques espèces végétales de conservation de Côte d'Ivoire",
 "TaxonKey is Entandrophragma C.DC."
 ]
}

 The dataset includes 79 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006791-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.