cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15915371
title: Bionano Irys Optical Genome Mapping data of Embleya australiensis MST-111070 isolate MST-111070v14

description: The "Strep_1_2015-12-11_13_14.tar.gz" file contains the full original package (made available to us by the technology provider and prior any further analysis) with the raw data of the optical mapping performed with Bionano Irys (Bionano Genomics, San Diego, USA) technology on genomic DNA of the actinomycete strain Embleya australiensis MST-111070 isolate MST-111070v14, that led to the publication of a high-quality genome assembly of this organism (https://doi.org/10.1101/2025.07.03.662523  and NCBI BioProject PRJNA1219506). As described in the methods section of the referred work: "Bacterial cells were prepared from a liquid culture following supplier’s instructions; DNA-extraction, labelling and data collection including processing of images to extract BNX files with molecules information, was commissioned to the Earlham Institute (Norwich Research Park, Norwich, NR4 7UZ, United Kingdom). We received BNX files with Bionano molecules information for a high-resolution map of the distribution of the recognition site for nickase Nt.BspQI (GCTCTTC)." The BNX files as well as the original images are provided in this package.

The file "NCBI_SUB14353019.zip" contains the final DNA sequence assembly submitted to NCBI, and includes the full assembly in FASTA format which can be used as refference for the Bionano data analysis. It is also included the genome assembly annotated by NCBI in Genbank format, and the .acc file with the allocated accesion numbers.

All these original raw data and DNA sequence assembly allow the reproduction of our analysis and test of our hypothesis and conclussions, with current software or other available in future.
DOI: 10.15468/dl.kbg8my
title: Occurrence Download

description: A dataset containing 242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amaranthus albus",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 242 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024682-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vv5m3m
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Barbarea iberica, Barbarea intermedia pyrenaica, Barbarea kayseri, Barbarea lepuznica, Barbarea linnaei, Barbarea lyrata, Barbarea macrophylla, Barbarea praecox vicina, Barbarea pseudostricta, Barbarea pyrenaica)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024683-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r8mwd7
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amaranthus albus",
 "Country is Kyrgyzstan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024684-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ta3qnz
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aeschynomene selloi)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 13 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024685-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2l2yrd
title: CCDC 2386124: Experimental Crystal Structure Determination

description: Related Article: Peimin Weng, Xiang Lin, Yi-Lin Cai, Xiaosheng Yan, Jinlian Cao, Zhao Li, Yun-Bao Jiang|2025|Cell Reports Physical Science|6|102521|doi:10.1016/j.xcrp.2025.102521
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l2ysf
title: CCDC 2386125: Experimental Crystal Structure Determination

description: Related Article: Peimin Weng, Xiang Lin, Yi-Lin Cai, Xiaosheng Yan, Jinlian Cao, Zhao Li, Yun-Bao Jiang|2025|Cell Reports Physical Science|6|102521|doi:10.1016/j.xcrp.2025.102521
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.sv6cuh
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ACC0159"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024687-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gr6nt8
title: Occurrence Download

description: A dataset containing 494 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "StateProvince is 新疆",
 "Year 2008-2025"
 ]
}

 The dataset includes 494 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024688-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2r2943
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lemna minuta",
 "Country is Albania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024689-250711103210423/datasets/export for details.
DOI: 10.15468/dl.3t6v2n
title: Occurrence Download

description: A dataset containing 300752 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Scirpus leptos, Scirpus nanus, Scirpus parvulus, Scirpus pollicaris, Scirpus pygmaeus, Trichophorum parvulum, Eriophorum alpinum, Eriophorum angustifolium, Eriophorum angustifolium, Eriophorum angustifolium cracoviense)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 300752 records from 770 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024639-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yuxt2r
title: Occurrence Download

description: A dataset containing 47456 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Geometry POLYGON ((-89.37647 18.47786, -89.49304 18.49081, -89.4973 18.42278, -89.53254 18.42304, -89.53805 18.38498, -89.48441 18.38578, -89.48242 18.40748, -89.44724 18.40555, -89.46437 18.3668, -89.48205 18.36813, -89.48993 18.36011, -89.48924 18.33853, -89.46227 18.33262, -89.46441 18.27932, -89.47941 18.28293, -89.49118 18.22387, -89.4994 18.20439, -89.46422 18.20432, -89.46526 18.10642, -89.4755 18.10428, -89.47466 18.02731, -89.41444 18.01599, -89.4171 18.05935, -89.39429 18.0595, -89.3949 17.97131, -89.3514 17.97458, -89.35233 18.00544, -89.32129 18.00439, -89.32141 17.95793, -89.36376 17.95736, -89.31889 17.92831, -89.34662 17.90605, -89.31305 17.90708, -89.31332 17.8632, -89.32641 17.86427, -89.32424 17.81702, -89.18871 17.78381, -89.15195 17.80381, -89.14629 17.96208, -89.11604 18.05217, -89.11273 18.05699, -89.10907 18.06179, -89.0608 18.09681, -88.99539 18.10953, -88.97599 18.09216, -88.97339 18.0858, -88.95578 18.06859, -88.91651 18.07265, -88.88068 18.04838, -88.87547 18.0469, -88.82603 18.04561, -88.81976 18.04778, -88.77807 18.07682, -88.77382 18.10952, -88.77715 18.11394, -88.81176 18.10191, -88.84112 18.1157, -88.86752 18.12783, -88.87281 18.1263, -88.88129 18.12493, -88.89536 18.12578, -88.90776 18.1516, -88.89049 18.20493, -88.92675 18.28647, -88.95058 18.30732, -88.99629 18.32037, -88.99803 18.38846, -89.0153 18.41199, -89.04239 18.44721, -89.37647 18.47786))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 47456 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024686-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cxnjtt
title: Occurrence Download

description: A dataset containing 1309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amaranthus albus",
 "Country is Portugal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1309 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024690-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.us3vvz
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lemna minuta",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 41 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024691-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29432558
title: BuildingShape-TransGAT.zip

description: This repository contains the paper's source code, configuration files, and sample data
DOI: 10.6084/m9.figshare.29432558.v2
title: BuildingShape-TransGAT.zip

description: This repository contains the paper's source code, configuration files, and sample data
DOI: 10.6084/m9.figshare.29432558.v1
title: BuildingShape-TransGAT.zip

description: This repository contains the source code, configuration files, and sample data for the paper:<br>**BuildShape-TransGAT: A GAT-Transformer Framework for Vector-Based Building Shape Classification**<br>It supports reproducibility of Experiments A (ten-shape classification) and B (cross-region generalization) as described in the manuscript submitted to *IJGIS*. See `README.md` for usage and environment setup instructions.<br><br><br>
DOI: 10.15468/dl.2j3fxn
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ACC0425"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024693-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w3hufs
title: Occurrence Download

description: A dataset containing 3274 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is BRA.5.363_2",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 3274 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024695-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5yph4z
title: Occurrence Download

description: A dataset containing 2031 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Iberolacerta monticola"
 ]
}

 The dataset includes 2031 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024694-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3abzp8
title: Occurrence Download

description: A dataset containing 26004 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Albizia julibrissin, Albizia julibrissin, Albizia julibrissin, Albizia julibrissin)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 26004 records from 370 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024692-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dcztq4
title: Occurrence Download

description: A dataset containing 2801 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lemna minuta",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2801 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024696-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tgcena
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Progne subis)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024697-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/snk-yxw-kna
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wvz-egg-8nf
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2kr-5y8-g1c
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8jc-wt0-2nb
title: †Lepidocyclina Gümbel, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f7c-mqf-l2j
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/67t-927-fk1
title: Amphistegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ag0-111-m15
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/10j-zkh-0ky
title: Uvigerina schwageri Brady, 1884

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/998-gpx-4bk
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2qm-59d-v1z
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9bw-39z-d8w
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4jk-e1m-ec8
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rhq-nas-y3a
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w91-0tx-64j
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f41-c64-ymv
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y2s-44s-0yn
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9dj-mqe-alz
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qgf-d4z-rsz
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ten-cs1-zbb
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8p7-rlz-n8f
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gm8-jqg-7y8
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rge-4ql-fnd
title: †Lepidocyclina Gümbel, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mhp-jwe-d87
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nmt-3nt-v4t
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jqw-3vl-78y
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v51-p46-hxy
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jhs-dq8-dbj
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/weq-vwa-pe4
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hl9-wme-98z
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hmg-90c-mxx
title: Rotaliidae Ehrenberg, 1839

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t9y-6v8-l5d
title: Ammonia beccarii (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.u36h2j
title: Occurrence Download

description: A dataset containing 5012778 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Galium"
 ]
}

 The dataset includes 5012778 records from 6205 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018602-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc3r623
title: CCDC 111664: Experimental Crystal Structure Determination

description: Related Article: H.Krautscheid, N.Emig, N.Klaassen, P.Seringer|1998|J.Chem.Soc.,Dalton Trans.||3071|doi:10.1039/a803468k
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3r634
title: CCDC 111665: Experimental Crystal Structure Determination

description: Related Article: H.Krautscheid, N.Emig, N.Klaassen, P.Seringer|1998|J.Chem.Soc.,Dalton Trans.||3071|doi:10.1039/a803468k
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3rcdl
title: CCDC 111829: Experimental Crystal Structure Determination

description: Related Article: D.Riou, O.Roubeau, G.Ferey|1998|Z.Anorg.Allg.Chem.|624|1021|doi:10.1002/(SICI)1521-3749(199806)624:6<1021::AID-ZAAC1021>3.0.CO;2-K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3rcfm
title: CCDC 111830: Experimental Crystal Structure Determination

description: Related Article: D.Riou, O.Roubeau, G.Ferey|1998|Z.Anorg.Allg.Chem.|624|1021|doi:10.1002/(SICI)1521-3749(199806)624:6<1021::AID-ZAAC1021>3.0.CO;2-K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3jmz6
title: CCDC 105368: Experimental Crystal Structure Determination

description: Related Article: D.Walther, P.Gebbhardt, R.Fischer, U.Kreher, H.Gorls|1998|Inorg.Chim.Acta|281|181|doi:10.1016/S0020-1693(98)00167-4
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.