cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/f2dsb8fxkm
title: Selenium Intervention in Alzheimer's Disease Mice and Its Possible Involvement of the Gut-Brain Axis

description: Alzheimer's disease (AD) is a neurodegenerative disease closely associated with alterations in the gut microbiota (GM). The impact on GM may be one of the mechanisms by which selenium (Se) prevents and treats AD. This study investigated the effects of sodium selenite interventions on GM-driven metabolic changes and microbiome-gut-brain axis (MGBA) communication in triple transgenic AD mice (3×Tg-AD) using 16S rDNA sequencing and metabolomics. The results demonstrated that Se intervention significantly altered the GM of AD mice, with notable enhancement in pathways related to amino acid metabolism (tyrosine and phenylalanine metabolism, tryptophan metabolism) and lipid metabolism (glycerol degradation). Metabolomics analysis identified 119 differentially expressed metabolites (DEMs) in gut contents, 42 in serum, and 63 in the cortex, which were involved in metabolic pathways such as arachidonic acid metabolism, bile acid biosynthesis, and phospholipid biosynthesis. Correlation analysis revealed that Family_XIII_AD3011_group and Alistipes, identified as key microbiotas, were significantly associated with multiple DEMs in peripheral to central brain tissue. Moreover, lipid metabolites exhibited close relationships with various tissues. These findings indicate that Se intervention increases the abundance of certain beneficial bacteria while suppressing harmful ones in the gut and affecting metabolic pathways, thereby improving cognitive function and pathological features in 3×Tg-AD mice.
DOI: 10.17632/f2dsb8fxkm.1
title: Selenium Intervention in Alzheimer's Disease Mice and Its Possible Involvement of the Gut-Brain Axis

description: Alzheimer's disease (AD) is a neurodegenerative disease closely associated with alterations in the gut microbiota (GM). The impact on GM may be one of the mechanisms by which selenium (Se) prevents and treats AD. This study investigated the effects of sodium selenite interventions on GM-driven metabolic changes and microbiome-gut-brain axis (MGBA) communication in triple transgenic AD mice (3×Tg-AD) using 16S rDNA sequencing and metabolomics. The results demonstrated that Se intervention significantly altered the GM of AD mice, with notable enhancement in pathways related to amino acid metabolism (tyrosine and phenylalanine metabolism, tryptophan metabolism) and lipid metabolism (glycerol degradation). Metabolomics analysis identified 119 differentially expressed metabolites (DEMs) in gut contents, 42 in serum, and 63 in the cortex, which were involved in metabolic pathways such as arachidonic acid metabolism, bile acid biosynthesis, and phospholipid biosynthesis. Correlation analysis revealed that Family_XIII_AD3011_group and Alistipes, identified as key microbiotas, were significantly associated with multiple DEMs in peripheral to central brain tissue. Moreover, lipid metabolites exhibited close relationships with various tissues. These findings indicate that Se intervention increases the abundance of certain beneficial bacteria while suppressing harmful ones in the gut and affecting metabolic pathways, thereby improving cognitive function and pathological features in 3×Tg-AD mice.
DOI: 10.17632/5p562r4c36.1
title: Data statement Availability, conformity

description: Data statement for Availability, conformity....
DOI: 10.17632/vs2vjzkw5h.1
title: knitting-dataset

description: This dataset presents comprehensive information on the structural and physical properties of various knitted fabric samples, including both weft and warp knitted fabrics. The data were collected to support research in textile engineering, particularly focusing on the influence of knitting parameters on fabric behavior.
The dataset is generated using knitting production report collected from June to August 2023. The dataset contains 12569 rows and 38 columns. It includes measurements of loop length, GSM (grams per square meter), fabric construction, composition, body parts, yarn counts, machine dia, machine gauge, fabric dia, etc. 

The dataset can be used in predicting and classifying the most important parameters such as GSM, Stitch length, rejection etc. Different types of data mining can also be performed here such as the interrelation of GSM and stitch length for various types of fabric construction. New features can also be generated using domain knowledge.
DOI: 10.17632/wcjtvmnjy7.1
title: ASA

description: Analysis of anticipatory synergy index and Anticipatory synergy onset time according to UCM hypothesis. 20 trials of forehand stroke in both fast and slow stimulus were performed by 10 novice participants and 10 skilled athletes. and muscle modes covariance that stabilize cop performance calculated in ASA time interval before action onset time. up to the forth folder, only the data of two representative participants are added (according to numerous files) including 1. skilled participant perform fast, 2. skilled participant perform slow, 3. novice participant perform fast, 4. novice participant perform slow. however from folder number 5 up to the end, the cumulative data of all participants are included.
DOI: 10.17632/wcjtvmnjy7.2
title: ASA

description: Analysis of anticipatory synergy index and Anticipatory synergy onset time according to UCM hypothesis. 20 trials of forehand stroke in both fast and slow stimulus were performed by 10 novice participants and 10 skilled athletes. and muscle modes covariance that stabilize cop performance calculated in ASA time interval before action onset time. up to the forth folder, only the data of two representative participants are added (according to numerous files) including 1. skilled participant perform fast, 2. skilled participant perform slow, 3. novice participant perform fast, 4. novice participant perform slow. however from folder number 5 up to the end, the cumulative data of all participants are included.
DOI: 10.17632/ghhxdnyh6v.1
title: INNOVATIVE IOT-BASED STRATEGY FOR WATER QUALITY CONTROL IN HYDROPONIC PLANTS USING MEDIAN FILTER AND LINEAR QUADRATIC ESTIMATION

description: pH and PPM water quality
DOI: 10.17632/z7r8979jn4
title: Xia et al., 2025 GCA

description: Data for manuscript “The dual origin of granites from fluid-absent and fluid-fluxed melting of the juvenile lower crust: New constraints from Mo isotopes and phase equilibrium modeling”.
DOI: 10.17632/z7r8979jn4.1
title: Xia et al., 2025 GCA

description: Data for manuscript “The dual origin of granites from fluid-absent and fluid-fluxed melting of the juvenile lower crust: New constraints from Mo isotopes and phase equilibrium modeling”.
DOI: 10.5281/zenodo.15390347
title: HANDEL: Evaluating Exception Handling with Probabilistic Reasoning
DOI: 10.5281/zenodo.15390348
title: HANDEL: Evaluating Exception Handling with Probabilistic Reasoning
DOI: 10.17632/swtwr24ghj.1
title: Fluorine diffusivity in lunar melts and fluorine content in the lunar mantle

description: Original data of EPMA analyses and F diffusion profiles
DOI: 10.17632/ty2v38d9p6.1
title: Mass Spectrometry Dataset of Conventional and Organic Tempe During In Vitro Digestion

description: Tempe is a superior plant-based protein source that provides a diverse array of nutritional benefits as a result of the presence of bioactive metabolites. Nevertheless, there is a scarcity of information regarding the metabolomics profile between organic and conventional tempe and the fate of these metabolites during in vitro digestion. This report examines the metabolomic profile of soybean as raw material and tempe prior to and following the in vitro digestion process. We obtained a comprehensive set of metabolomic data using ultra-high-performance liquid chromatography coupled with high-resolution mass spectrometry (UHPLC-HRMS). The metabolomics dataset organized into Excel sheets and structure according to polarity, mass to charge ratio (m/z), retention time, feature name, biological replicates and controls. This data offers preliminary insights into the metabolite profile of tempe samples, encompassing source material soybean, tempe, and tempe digesta.
DOI: 10.17632/ty2v38d9p6.2
title: Mass Spectrometry Dataset of Conventional and Organic Tempe Before and After In Vitro Digestion

description: Tempe is a superior plant-based protein source that provides a diverse array of nutritional benefits as a result of the presence of bioactive metabolites. Nevertheless, there is a scarcity of information regarding the metabolomics profile between organic and conventional tempe and the fate of these metabolites during in vitro digestion. This report examines the metabolomic profile of soybean as raw material and tempe prior to and following the in vitro digestion process. We obtained a comprehensive set of metabolomic data using ultra-high-performance liquid chromatography coupled with high-resolution mass spectrometry (UHPLC-HRMS). The metabolomics dataset organized into Excel sheets and structure according to polarity, mass to charge ratio (m/z), retention time, feature name, biological replicates and controls. This data offers preliminary insights into the metabolite profile of tempe samples, encompassing source material soybean, tempe, and tempe digesta.
DOI: 10.17632/6vr8v59ykm
title: Chikungunya virus infection disrupts MHC-I antigen presentation via nonstructural protein 2

description: Arthritogenic alphaviruses, including chikungunya virus (CHIKV), are re-emerging global public health threats with no approved vaccines or antiviral therapies. Infection with these viruses causes debilitating musculoskeletal disease for months to years that is associated with the persistence of viral RNA and antigen. Prior studies using a mouse model found that CD8+ T cells, which recognize viral peptides in the context of major histocompatibility class I (MHC-I) displayed on the surface of infected cells, have a limited role in the control and clearance of CHIKV infection in joint-associated tissues, suggesting that CHIKV-infected cells evade these critical effectors of the antiviral immune response. Here, we show that MHC-I antigen presentation is inefficient in CHIKV-infected joint tissue fibroblasts, and that a protein encoded by CHIKV and produced in infected cells, nonstructural protein 2 (nsP2), disrupts the surface display of MHC-I molecules and antigen recognition of infected cells by CD8+ T cells. Our findings support a role for CHIKV nsP2 in the evasion of the CD8+ T cell response and establishment of persistent infection.
DOI: 10.17632/6vr8v59ykm.1
title: Chikungunya virus infection disrupts MHC-I antigen presentation via nonstructural protein 2

description: Arthritogenic alphaviruses, including chikungunya virus (CHIKV), are re-emerging global public health threats with no approved vaccines or antiviral therapies. Infection with these viruses causes debilitating musculoskeletal disease for months to years that is associated with the persistence of viral RNA and antigen. Prior studies using a mouse model found that CD8+ T cells, which recognize viral peptides in the context of major histocompatibility class I (MHC-I) displayed on the surface of infected cells, have a limited role in the control and clearance of CHIKV infection in joint-associated tissues, suggesting that CHIKV-infected cells evade these critical effectors of the antiviral immune response. Here, we show that MHC-I antigen presentation is inefficient in CHIKV-infected joint tissue fibroblasts, and that a protein encoded by CHIKV and produced in infected cells, nonstructural protein 2 (nsP2), disrupts the surface display of MHC-I molecules and antigen recognition of infected cells by CD8+ T cells. Our findings support a role for CHIKV nsP2 in the evasion of the CD8+ T cell response and establishment of persistent infection.
DOI: 10.17632/823tckxwtm.1
title: Basic patches on the E2 glycoprotein of eastern equine encephalitis virus influence viral vascular clearance and dissemination

description: Abstract: Previously we found SINV-EEEV particles can be removed from the murine blood circulation in a phagocyte-dependent manner which can be disrupted by either transient depletion of vascular heparan sulfate glycosaminoglycans (GAG) or mutation of the viral E2 glycoprotein (K71/74/77A) associated with decreased GAG binding in vitro. Here, we further investigate the viral determinants of EEEV vascular clearance and evaluate their role in viremia development. We identified two large basic patches on the EEEV E2 glycoprotein which contain two known GAG-binding sites (K71/74/77 and K156/R157) and six additional basic residues (K10, R13, K56, R152, K231, and K232). We find that disruption of either basic patch by single alanine substitutions promotes prolonged retention of SINV-EEEV particles in the murine blood circulation in an experimental viremia model. Furthermore, like the attenuated K71/74/77A mutant, we observed the K156/R157A, K10A, and K231A mutations are also associated with similar enhanced viral dissemination in a mouse infection model as the attenuated K71/74/77A mutant. Surprisingly, despite known differences in GAG-binding and potential alteration in receptor interactions, we find the initial dispersal of WT and mutant SINV-EEEV virions from the inoculation site to the draining lymph node to be equivalent at 1 hour post-subcutaneous inoculation. Moreover, our data suggests the higher viremia associated with mutation of the E2 basic patches may be attributed to evasion of viremic control by blood-filtering phagocytes. Overall, this study defines viral features of the EEEV E2 glycoprotein that influence tissue-specific viral dissemination and highlights the capacity of blood-filtering phagocytes to modulate EEEV viremia.

Data description: Datasets are qPCR results quantifying viral genomes in each sample. For each sample, RNA was extracted and used to generated cDNA; the cDNA was analyzed by TaqMan qPCR against a standard curve for quantification.
DOI: 10.17632/m7y2nssntk.1
title: Species-Specific MARCO-Alphavirus Interactions Dictate Chikungunya Virus Viremia. Li et al.

description: Raw data for figures.
DOI: 10.17632/p628jxwymg.1
title: Dataset for 'Molecular insights into the dynamic relationship between respiration rate and sulfur isotope effect'

description: Data for all figures in the manuscript by Woo et al. to be submitted to Geochimica et Cosmochimica Acta as "Molecular insights into the dynamic relationship between respiration rate and sulfur isotope effect".
DOI: 10.17632/7gm3373j66
title: Economic concerns of the green revolution: Analyzing the dual role of Environmental Policy, Renewable Energy and Environmental Technology on Total Factor Carbon Productivity

description: EPS and TFCP
DOI: 10.17632/7gm3373j66.1
title: Economic concerns of the green revolution: Analyzing the dual role of Environmental Policy, Renewable Energy and Environmental Technology on Total Factor Carbon Productivity

description: EPS and TFCP
DOI: 10.17632/v6t349s7tj.1
title: Molybdenum isotopic compositions in volcanic rocks from Northeast Japan arc (2))

description: Literature data of major etlements, trace elements and Sr, Nd, Pb, Mo isotopic composition in volcanic rocks of the Northeast Japan arc and Izu arc to be published in Geochimica et Cosmochimica Acta as “Molybdenum isotopic compositions in volcanic rocks from Northeast Japan arc”. Table. S1: Literature data of major elements, trace elements and Sr, Nd, Pb, Mo isotopic composition of Notheast Japan arc and Izu arc; Tabele2, 3: The data of north hemisphere reference line and boundaries between low-K, medium-K and high-K on a K2O versus SiO2 in the paper.
DOI: 10.17632/4jbbdbfz3n
title: The Rio de Pedras gold prospect, Rio das Velhas greenstone belt, Minas Gerais, Brazil

description: Supplementary Material
- Table 1: Chemical analysis database - major elements, LOR, carbon, sulfur and trace elements
- Table 2: Gold EPMA microanalysis
- High-resolution additional figure of gold morphology photomicrography
DOI: 10.17632/4jbbdbfz3n.1
title: The Rio de Pedras gold prospect, Rio das Velhas greenstone belt, Minas Gerais, Brazil

description: Supplementary Material
- Table 1: Chemical analysis database - major elements, LOR, carbon, sulfur and trace elements
- Table 2: Gold EPMA microanalysis
- High-resolution additional figure of gold morphology photomicrography
DOI: 10.17632/pmxt7h8cd8.1
title: Gully Erosion Dataset

description: An gully erosion dataset was constructed by using high-resolution optical imagery. The imagery covers key agricultural regions within Lishu County (Siping City), Nong'an County (Changchun City), Qianguo County and Fuyu City (Songyuan City) in Jilin Province, China. Data acquisition occurred during periods of low vegetation cover (April-May and October-November) between 2020 and 2023 to optimize gully visibility. The study areas are predominantly characterized by chernozem, known for their susceptibility to soil erosion.
Integrating findings from field surveys and high-resolution remote sensing interpretation, the identified gully erosion features were categorized into three primary types: (1) ephemeral gullies (small-scale, transient channels formed by concentrated overland flow, often recurring seasonally); (2) permanent gullies (deep-seated, stable channels with near-vertical sidewalls and irreversible morphology); and (3) gullies in complex environments (features whose detection is hindered by vegetation, terrain complexity, or anthropogenic disturbance). An initial dataset of gully images was constructed. All images were standardized to 512×512 pixels for uniformity. Using the LabelMe software, annotations were created, marking gully pixels in red and background pixels in black. To enhance dataset scale and diversity for robust model training, data augmentation was performed using spatial-level enhancements (rotation, flipping) and pixel-level enhancements (blurring, noise addition, contrast adjustment) for each gully type.
DOI: 10.17632/wktpxf7fyh.1
title: Dataset for "A Diagnostic Framework and Data Inventory to Analyze Human Intervention on Streamflow"

description: This dataset includes all code used to set-up, run, and evaluate the large-scale hydrological models described in 'A Diagnostic Framework and Data Inventory to Analyze Human Intervention on Streamflow'

Commented code is provided with serial numbers in the root folder. Running the code in order from 1 to 25 will create files in the "Processed_Data" and "Results" folders. "Functions" contains all the functions that would be required by code in the root folder. 

Raw Data from sources mentioned in 'A Diagnostic Framework and Data Inventory to Analyze Human Intervention on Streamflow' must be downloaded and stored in a folder named "Raw_Data" prior to running code included in this dataset.
DOI: 10.17632/76kzr3psmw.1
title: The role of serum albumin and nutritional index in predicting post-stroke cognitive impairment: a systematic review and meta-analysis

description: This study is a meta-analysis of the predictive value of albumin and its related nutritional indicators for cognitive impairment after stroke. Our study found that patients with post-stroke cognitive impairment had poor nutritional status, specifically lower serum albumin levels, lower geriatric nutritional risk index, and lower HALP scores.
DOI: 10.17632/mpxr5j5k97.1
title: Entrenamiento Neurocognitivo por ordenador en adultos mayores con Deterioro Cognitivo Leve
DOI: 10.17632/5w6g2vpzgf.1
title: Contrasting endemic versus cosmopolitan patterns in the evolution of Austropotamobius crayfish species

description: Supporting datasets (mtCOI sequences ID, location and references) used in this study.
DOI: 10.17632/5w6g2vpzgf.2
title: Toward scientific clarity in the evolutionary puzzle of Austropotamobius crayfish

description: Supporting datasets (mtCOI & 16S sequences ID, location and references) used in this study.
DOI: 10.17632/349y7xs5st.1
title: Validación criterios GLIM Cirugía Cardíaca

description: Esta investigación tiene como objetivo determinar la validez de criterio y la confiabilidad interevaluador de los criterios GLIM para el diagnóstico de desnutrición y la predicción de desenlaces en cirugía cardiaca
DOI: 10.17632/924jf7b78c.1
title: FusionLightSR Multimodal Data Extraction Pipeline: VIIRS NTL, WorldPop & ESA WorldCover Retrieval Scripts

description: For Bangalore, three complementary geospatial datasets were extracted using Google Earth Engine to support multimodal super‑resolution. First, monthly nighttime light (NTL) radiance was obtained from the VIIRS DNB collection, filtered for the year 2020 and clipped to a polygon defining the Bangalore metropolitan area. The median composite of all monthly images was converted to 32‑bit float to preserve radiometric precision, then exported at multiple spatial resolutions (30 m through 500 m) for analysis of scale effects. Second, population density data from the WorldPop 100 m product were averaged over the same time period and region, yielding a continuous surface of estimated inhabitants per grid cell. This layer was similarly exported at the set of target scales, providing an auxiliary modality that reflects human settlement patterns. Third, land‑cover information was drawn from the ESA WorldCover 2020 map, clipped to Bangalore, and exported at 10 m resolution; its categorical classes supply contextual information on urban, vegetation, and other land‑use types.

To apply the identical workflow in Delhi, one only need to redefine the study area polygon. In place of the Bangalore coordinates, the following polygon may be used to clip all three datasets for the Delhi region:

var delhiPolygon = ee.Geometry.Polygon([
 [76.7, 28.2],
 [76.7, 29.0],
 [77.9, 29.0],
 [77.9, 28.2],
 [76.7, 28.2]
]);

With this single change, the VIIRS NTL, WorldPop population, and ESA WorldCover layers will be extracted and exported for Delhi in exactly the same manner as for Bangalore.
DOI: 10.17632/j3d4ts5ttc.1
title: Data for: Riverine stable isotopes reveal the impact of carbonate dissolution on oceanic Zn

description: Relavant raw data used in the analysis of the publication "Riverine stable isotopes reveal the impact of carbonate dissolution on oceanic Zn"
DOI: 10.17632/j3d4ts5ttc.2
title: Data for: Riverine stable isotopes reveal the impact of carbonate dissolution on oceanic Zn

description: Relavant data used in the analysis of the publication "Riverine stable isotopes reveal the impact of carbonate dissolution on oceanic Zn"