cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5160976
title: OpenCitations Corpus provenance data of all the responsible agents, archived on 2017-06-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) provenance data about responsible agents, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5160997.v1
title: Numerical modelling on deformation and recrystallisation in ice

description: This dataset contains 16 movies showing the results of numerically modelling deformation and recrystallisation in ice on the microscopic scale using the modelling platform Elle. The movies illustrate the 2D microstructure evolution under pure shear deformation in terms of crystallographic preferred orientations, dislocation densities and local strain rates. The numerical simulations are used to investigate the relevance of the process of grain dissection for ice microdynamics. Further information is provided in the related publication “The relevance of grain dissection for grain size reduction in polar ice: insights from numerical models and ice core microstructure analysis” by Steinbach et al. (2017).
DOI: 10.6084/m9.figshare.5160982
title: Contrast Enhancement Forensics based on Convolutional Neural Networks(CNN)

description: This work is about a CNN-based contrast enhancement image forensic method, which can verify autheticity of digital images, i.e., it can distinguish the contrast enhancement forgeries from unaltered images. <br>The dataset consists of grey level co-occurrence matrix(GLCM) of three types of images: unaltered images, contrast-enhanced images processed by common contrast enhancement techniques (histogram stretching, gamma correction, and S-curve mapping), and the images manipulated by using three current counter-forensic attacks. <br><br>README.pdf has descriptions of the other .tar.gz format files. <br><br>- Train dataset.tar.gz: train data<br>- Test dataset.tar.gz: test data<br>- CEForensicsCNN.tar.gz: source codes & trained model<br>
DOI: 10.6084/m9.figshare.5160949
title: Supplemental Material for Building Protection Against External Ionizing Fallout Radiation

description: The US Department of Defense is implementing the Regional Shelter Analysis methodology to improve the ability of the Hazard Prediction and Assessment Capability (HPAC) model to account for building protection. This HPAC improvement effort requires accurate estimates of building protection for common building construction types worldwide. The main report, titled <i>Building Protection Against External Ionizing Fallout Radiation,</i> (a) describes the physics most relevant to assessing fallout building protection, (b) identifies a set of key building attributes that are sufficient to characterize fallout shelter quality for individual buildings, and (c) assesses the degree to which the building attributes can characterize fallout shelter quality. This report provides more detail on the data used to verify the conclusions presented in the main report.
DOI: 10.6084/m9.figshare.5160982.v1
title: Contrast Enhancement Forensics based on Convolutional Neural Networks(CNN)

description: This work is about a CNN-based contrast enhancement image forensic method, which can verify autheticity of digital images, i.e., it can distinguish the contrast enhancement forgeries from unaltered images. <br>The dataset consists of grey level co-occurrence matrix(GLCM) of three types of images: unaltered images, contrast-enhanced images processed by common contrast enhancement techniques (histogram stretching, gamma correction, and S-curve mapping), and the images manipulated by using three current counter-forensic attacks. <br><br>README.pdf has descriptions of the other .tar.gz format files. <br><br>- Train dataset.tar.gz: train data<br>- Test dataset.tar.gz: test data<br>- CEForensicsCNN.tar.gz: source codes & trained model<br>
DOI: 10.6084/m9.figshare.5160976.v2
title: OpenCitations Corpus provenance data of all the responsible agents, archived on 2017-06-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) provenance data about responsible agents, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5160976.v1
title: OCC provenance data of all the responsible agents, made on 2017-06-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) provenance data about responsible agents, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5160730
title: Tweets using #Botany2017 hashtag

description: Tweets using the #Botany2017 hashtag for the 2017 Botany meeting (Fort Worth, TX), collected as of 6:30 PM EST June 29th 2017.
DOI: 10.6084/m9.figshare.5160727
title: Global Wavelet Wind Spectra Data Priest River Experimental Forest

description: Global Morlet wavelet transforms for each half hour used in creation of figures in<b>:<br></b>Russell, E.S., H. Liu, B. Lamb. Wavelet spectra within a forest sub-canopy under different wind directions and stabilities. J. Geophys. Res.-Atm.
DOI: 10.6084/m9.figshare.5160727.v2
title: Global Wavelet Wind Spectra Data Priest River Experimental Forest

description: Global Morlet wavelet transforms for each half hour used in creation of figures in<b>:<br></b>Russell, E.S., H. Liu, B. Lamb. Wavelet spectra within a forest sub-canopy under different wind directions and stabilities. J. Geophys. Res.-Atm.
DOI: 10.6084/m9.figshare.5160715.v2
title: Real-Time Monitoring of High-Dimensional Functional Data Streams via Spatio-Temporal Smooth Sparse Decomposition

description: High-dimensional data monitoring and diagnosis has recently attracted increasing attention among researchers as well as practitioners. However, existing process monitoring methods fail to fully use the information of high-dimensional data streams due to their complex characteristics including the large dimensionality, spatio-temporal correlation structure, and nonstationarity. In this article, we propose a novel process monitoring methodology for high-dimensional data streams including profiles and images that can effectively address foregoing challenges. We introduce spatio-temporal smooth sparse decomposition (ST-SSD), which serves as a dimension reduction and denoising technique by decomposing the original tensor into the functional mean, sparse anomalies, and random noises. ST-SSD is followed by a sequential likelihood ratio test on extracted anomalies for process monitoring. To enable real-time implementation of the proposed methodology, recursive estimation procedures for ST-SSD are developed. ST-SSD also provides useful diagnostics information about the location of change in the functional mean. The proposed methodology is validated through various simulations and real case studies. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.5160727.v1
title: Global Wavelet Wind Spectra Data Priest River Experimental Forest

description: Global Morlet wavelet transforms for each half hour used in creation of figures in<b>:<br></b>Russell, E.S., H. Liu, B. Lamb. Wavelet spectra within a forest sub-canopy under different wind directions and stabilities. J. Geophys. Res.-Atm.
DOI: 10.6084/m9.figshare.5160715.v1
title: Real-time Monitoring of High-Dimensional Functional Data Streams via Spatio-Temporal Smooth Sparse Decomposition

description: High dimensional data monitoring and diagnosis has recently attracted increasing attention among researchers as well as practitioners. However, existing process monitoring methods fail to fully utilize the information of high dimensional data streams due to their complex characteristics including the large dimensionality, spatio-temporal correlation structure, and non-stationarity. In this paper, we propose a novel process monitoring methodology for high-dimensional data streams including profiles and images that can effectively address foregoing challenges. We introduce spatio-temporal smooth sparse decomposition (ST-SSD), which serves as a dimension reduction and denoising technique by decomposing the original tensor into the functional mean, sparse anomalies, and random noises. ST-SSD is followed by a sequential likelihood ratio test on extracted anomalies for process monitoring. To enable real-time implementation of the proposed methodology, recursive estimation procedures for ST-SSD are developed. ST-SSD also provides useful diagnostics information about the location of change in the functional mean. The proposed methodology is validated through various simulations and real case studies.
DOI: 10.6084/m9.figshare.5160688.v1
title: A collection of experimental data for aerosol monitoring cyclones

description: Cyclone behavior is complex and difficult to model. Recent years have seen the development of new and better predictive models for cyclone performance, which are providing new insights into how cyclone performance is affected by cyclone geometry. Experimental data are essential for verification of such models. In this article we present a dataset of more than 250 experimental determinations of cyclone penetration. The dataset includes cyclones with a wide range of sizes and geometries, tested at a wide range of flow rates. We illustrate some empirical, semi-empirical and mathematical approaches to modeling these cyclone data. For our data, we show that mathematical modeling approaches developed for large gas-cleaning cyclones can also be applied to small aerosol monitoring cyclones, to diverse cyclone geometries, and laminar flow operating conditions. Copyright © Crown copyright
DOI: 10.6084/m9.figshare.5160673
title: R-notebooks (html files) for seabed classification

description: R-notebooks for seabed classification using functional data analysis and time series clustering
DOI: 10.6084/m9.figshare.5160673.v1
title: R-notebooks (html files) for seabed classification

description: R-notebooks for seabed classification using functional data analysis and time series clustering
DOI: 10.6084/m9.figshare.5160622
title: Appendix 3

description: Examples of poor practice in conflict of interest disclosures
DOI: 10.6084/m9.figshare.5160589
title: Appendix 2

description: Disclosures and registers submitted in response to our Freedom of Information request
DOI: 10.6084/m9.figshare.5160385
title: DNA methylation of candidate genes in peripheral blood from patients with type 2 diabetes or the metabolic syndrome.xlsx

description: No significant differences in gene-specific methylation between patients and controls were observed, although a trend towards significance was observed for <i>PEG3</i>. Differential methylation was observed between the groups in 4 out of the 42 single CpG loci located in the promoters regions of the genes <i>FTO</i>, <i>KCNJ11</i>, <i>PPARγ </i>and <i>PDK4</i>. A trend towards a positive correlation was observed for <i>PEG3</i> methylation with HDL cholesterol levels.
DOI: 10.6084/m9.figshare.5160592
title: Appendix 4

description: Spreadsheets detailing our quantitative analyses
DOI: 10.6084/m9.figshare.5160385.v1
title: DNA methylation of candidate genes in peripheral blood from patients with type 2 diabetes or the metabolic syndrome.xlsx

description: No significant differences in gene-specific methylation between patients and controls were observed, although a trend towards significance was observed for <i>PEG3</i>. Differential methylation was observed between the groups in 4 out of the 42 single CpG loci located in the promoters regions of the genes <i>FTO</i>, <i>KCNJ11</i>, <i>PPARγ </i>and <i>PDK4</i>. A trend towards a positive correlation was observed for <i>PEG3</i> methylation with HDL cholesterol levels.
DOI: 10.6084/m9.figshare.5158063.v1
title: Expand, Humanize, Simplify: An Interview with Sandy Berman

description: In this interview, Sanford (“Sandy”) Berman discusses his career and his efforts to promote responsive, user-friendly cataloging practices over uncritical deference to prevailing standards. Topics covered include his work at Hennepin County Library, his thoughts on the campaign to change the subject heading “Illegal aliens,” his ongoing practice of proposing new Library of Congress Subject Headings, and his relationship with the Library of Congress.
DOI: 10.6084/m9.figshare.5155885
title: Lassa fever outbreaks and seroprevalence database

description: Database of case reports of Lassa fever acute human cases and rodent/human seroprevalence. Used in Gibb et al, 'Understanding the cryptic nature of Lassa fever in West Africa', 2017: https://doi.org/10.1080/20477724.2017.1369643
DOI: 10.6084/m9.figshare.5155735
title: Raw metabolomics data.csv

description: Serum metabolomic data from Black Angus steers
DOI: 10.6084/m9.figshare.5155456
title: Safety and effectiveness of tacrolimus add-on therapy for rheumatoid arthritis patients without an adequate response to biological disease-modifying anti-rheumatic drugs (DMARDs): Post-marketing surveillance in Japan

description: <b>Objectives:</b> Post-marketing surveillance (PMS) was conducted to assess the safety and effectiveness of tacrolimus (TAC) add-on therapy for patients with rheumatoid arthritis (RA) and an inadequate response to biological disease-modifying anti-rheumatic drugs (DMARDs). <b>Methods:</b> Patients with RA from 180 medical sites across Japan were registered centrally with an electronic investigation system. The observational period was 24 weeks from the first day of TAC administration concomitantly with biological DMARDs. <b>Results:</b> Safety and effectiveness populations included 624 and 566 patients, respectively. Patients were predominantly female (81.1%), with a mean age of 61.9 years. Overall, 125 adverse drug reactions (ADRs) occurred in 94 patients (15.1%), and 15 serious ADRs occurred in 11 patients (1.8%). These incidences were lower compared with previously reported incidences after TAC treatment in PMS, and all of the observed ADRs were already known. A statistically significant improvement was observed in the primary effectiveness variable of Simplified Disease Activity Index after TAC treatment; 62.7% of patients achieved remission or low disease activity at week 24. <b>Conclusions:</b> TAC is well tolerated and effective when used as an add-on to biological DMARDs in Japanese patients with RA who do not achieve an adequate response to biological DMARDs in a real-world clinical setting.
DOI: 10.6084/m9.figshare.5155456.v1
title: Safety and effectiveness of tacrolimus add-on therapy for rheumatoid arthritis patients without an adequate response to biological disease-modifying anti-rheumatic drugs (DMARDs): Post-marketing surveillance in Japan

description: <b>Objectives:</b> Post-marketing surveillance (PMS) was conducted to assess the safety and effectiveness of tacrolimus (TAC) add-on therapy for patients with rheumatoid arthritis (RA) and an inadequate response to biological disease-modifying anti-rheumatic drugs (DMARDs). <b>Methods:</b> Patients with RA from 180 medical sites across Japan were registered centrally with an electronic investigation system. The observational period was 24 weeks from the first day of TAC administration concomitantly with biological DMARDs. <b>Results:</b> Safety and effectiveness populations included 624 and 566 patients, respectively. Patients were predominantly female (81.1%), with a mean age of 61.9 years. Overall, 125 adverse drug reactions (ADRs) occurred in 94 patients (15.1%), and 15 serious ADRs occurred in 11 patients (1.8%). These incidences were lower compared with previously reported incidences after TAC treatment in PMS, and all of the observed ADRs were already known. A statistically significant improvement was observed in the primary effectiveness variable of Simplified Disease Activity Index after TAC treatment; 62.7% of patients achieved remission or low disease activity at week 24. <b>Conclusions:</b> TAC is well tolerated and effective when used as an add-on to biological DMARDs in Japanese patients with RA who do not achieve an adequate response to biological DMARDs in a real-world clinical setting.
DOI: 10.6084/m9.figshare.5155387
title: U–Pb zircon geochronology of Cretaceous arc magmatism in eastern Chukotka, NE Russia, with implications for Pacific plate subduction and the opening of the Amerasia Basin

description: SIMS U–Pb data table.
DOI: 10.4225/03/5954f790e6ba8
title: README.txt

description: README.txt file explaining the SNPfilter.R and Genotyper.R scripts.<br>
DOI: 10.6084/m9.figshare.5155384
title: U–Pb zircon geochronology of Cretaceous arc magmatism in eastern Chukotka, NE Russia, with implications for Pacific plate subduction and the opening of the Amerasia Basin

description: Geochemistry data table.
DOI: 10.6084/m9.figshare.5155387.v1
title: U–Pb zircon geochronology of Cretaceous arc magmatism in eastern Chukotka, NE Russia, with implications for Pacific plate subduction and the opening of the Amerasia Basin

description: SIMS U–Pb data table.
DOI: 10.6084/m9.figshare.5155366
title: A new extreme longirostrine temnospondyl from the Triassic of Madagascar: phylogenetic and palaeobiogeographical implications for trematosaurids

description: Trematosaurids form a very large and remarkable clade of Triassic tetrapods (Temnospondyli: Stereospondyli) with a worldwide geographical distribution. Compared with specimens from Europe, Australia or North America, they remain relatively scarce in African rocks, where they are mainly known in the Early Triassic of Madagascar and South Africa. Longirostrine trematosaurids were only known from Madagascar, represented by the genus <i>Wantzosaurus</i>. However, we describe herein a new species of the longirostrine trematosaurid <i>Aphaneramma</i>, <i>Aphaneramma gavialimimus</i> sp. nov., from the Olenekian (Lower Triassic) of Madagascar. This genus was previously known from the Early Triassic of Europe and Asia. Based on a new nearly complete skull, the new species is characterized by a premaxilla-nasal suture anteriorly directed, not contacting the nostrils; choanae completely included within the palatines; the ventral opening of the orbits in the anterior part of the interpterygoid vacuities; a very elongated nasal covering more than 50% of the prenarial length; and an anteriorly widened cultriform process. <i>Aphaneramma gavialimimus</i> sp. nov., with a skull length of about 40 cm, may be one of the largest known trematosaurids. Its inclusion in a new phylogenetic analysis confirms its close affinities with the North American genus <i>Cosgriffius</i>, and clarifies the relationships of trematosaurids in general and lonchorhynchines in particular. The new species also increases the palaeobiodiversity of marine trematosaurs in Gondwana and allows discussing their apparently rapid cosmopolitanism just after the great Permian–Triassic mass extinction. http://zoobank.org/urn:lsid:zoobank.org:pub:6992EB6B-5708-4226-860D-47982CFB7F22
DOI: 10.6084/m9.figshare.5155333
title: Evolution, diversity and interactions with past human populations of recently extinct <i>Pholidoscelis</i> lizards (Squamata: Teiidae) from the Guadeloupe Islands (French West-Indies)

description: This paper aims to demonstrate how subfossil bone remains from Pleistocene and Holocene deposits can help to reconstruct the history of recently extinct taxa through the example of <i>Pholidoscelis</i> lizards from the Guadeloupe Islands in the French West Indies. To achieve this, we conducted a new anatomical and zooarchaeological study of fossil <i>Pholidoscelis</i> remains collected from 23 archaeological and paleontological deposits on the Guadeloupe Islands from which this genus is nowadays absent. Our results shed light on the past existence of large <i>Pholidoscelis</i> lizards on all the Guadeloupe islands but also on the difficulties of confident specific identification for these remains. Nevertheless, we suggest a possible past occurrence of the now extinct <i>Pholidoscelis major</i> on nearly all of the Guadeloupe islands. In addition, we identified a new <i>Pholidoscelis</i> species, <i>Pholidoscelis turukaeraensis</i> sp. nov., on Marie-Galante Island, where no <i>Pholidoscelis</i> lizards were previously reported. This new species underwent an increase in size after the end of the Pleistocene period, possibly due to reduced predation pressure. We also highlight the consumption of <i>Pholidoscelis</i> lizards by pre-Columbian Amerindians and the huge impact of European colonization, which led to the extinction of all these lizards in less than 300 years.http://zoobank.org/urn:lsid:zoobank.org:pub:15C39436-A083-483F-B35E-78807B606904
DOI: 10.6084/m9.figshare.5155327
title: U–Pb zircon geochronology of Cretaceous arc magmatism in eastern Chukotka, NE Russia, with implications for Pacific plate subduction and the opening of the Amerasia Basin

description: SIMS U–Pb data table.
DOI: 10.6084/m9.figshare.5155333.v1
title: Evolution, diversity and interactions with past human populations of recently extinct <i>Pholidoscelis</i> lizards (Squamata: Teiidae) from the Guadeloupe Islands (French West-Indies)

description: This paper aims to demonstrate how subfossil bone remains from Pleistocene and Holocene deposits can help to reconstruct the history of recently extinct taxa through the example of <i>Pholidoscelis</i> lizards from the Guadeloupe Islands in the French West Indies. To achieve this, we conducted a new anatomical and zooarchaeological study of fossil <i>Pholidoscelis</i> remains collected from 23 archaeological and paleontological deposits on the Guadeloupe Islands from which this genus is nowadays absent. Our results shed light on the past existence of large <i>Pholidoscelis</i> lizards on all the Guadeloupe islands but also on the difficulties of confident specific identification for these remains. Nevertheless, we suggest a possible past occurrence of the now extinct <i>Pholidoscelis major</i> on nearly all of the Guadeloupe islands. In addition, we identified a new <i>Pholidoscelis</i> species, <i>Pholidoscelis turukaeraensis</i> sp. nov., on Marie-Galante Island, where no <i>Pholidoscelis</i> lizards were previously reported. This new species underwent an increase in size after the end of the Pleistocene period, possibly due to reduced predation pressure. We also highlight the consumption of <i>Pholidoscelis</i> lizards by pre-Columbian Amerindians and the huge impact of European colonization, which led to the extinction of all these lizards in less than 300 years.http://zoobank.org/urn:lsid:zoobank.org:pub:15C39436-A083-483F-B35E-78807B606904