cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/nyp3fpbt2y
title: Partial level densities for nuclear data calculations

description: Abstract The main formalisms of partial level densities (PLD) used in preequilibrium nuclear reaction models, based on the equidistant spacing model (ESM), are considered. A collection of FORTRAN77 functions for PLD calculation by using 14 formalisms for the related partial-state densities is provided and 28 sample cases (73 versions) are described. The results are given in graphic form too. Composite (recommended) formulas, which include the optional use of various corrections, i.e. the advanced pair... Title of program: PLD Catalogue Id: ADIK_v1_0 Nature of problem This Fortran code is a collection of subroutines for calculation of the partial nuclear level densities (PLD) mainly used in preequilibrium nuclear reaction models, by using 14 formalisms for the related partial state densities (PSD). Versions of this program held in the CPC repository in Mendeley Data ADIK_v1_0; PLD; 10.1016/S0010-4655(98)00050-2 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/sjwb9hymhn
title: The LaMIT database: a read speech corpus for acoustic studies of the Italian language toward lexical access based on the detection of landmarks and other acoustic cues to features

description: The LaMIT database consists in recordings of 100 Italian sentences. The sentences in the database were designed so to include all phonemes of the Italian language, and also take into account the typical frequency of each phoneme in written Italian.
Four native adult speakers of Standard Italian, raised and living in Rome, Italy, two female and two male, pronounced the sentences in two different recording sessions; two repetitions for each sentence per speaker were therefore collected, for a total of 800 recordings.
The database was specifically created for application in the LaMIT project, that focuses on the application to the Italian language of the Lexical Access model proposed by Ken Stevens for American English. The model relies on the detection of specific acoustic discontinuities – called landmarks – and cues correlated to acoustic features that characterize each phoneme. Each recording was thus processed to generate a set of labeling files that identify both predicted landmarks and cues, based on the phonemes in the written sentence and actual landmarks/cues detected in the recording. The labeling files, redacted according to the labeling syntax used in the Praat speech processing software, are also made available as part of the LAMIT database.
DOI: 10.6084/m9.figshare.19092089.v1
title: Acrometrix Synthetic Hotspot controls

description: A list of 500+ variants from Acrometrix Synthetic Hotspot controls for Sample AC01.
DOI: 10.6084/m9.figshare.14132123.v3
title: Airborne_Color_IR_Videography_Data_High_Resolution_Mosaics_April_15_2003_to_April_18_2003_Noel_Kempff_Mercado_Bolivia_Forest_Lianas

description: A repository for high-resolution videography image data collected for research described in Foster et al. (2008) Remote Sensing of Environment over Noel Kempff Mercado National Park Bolivia. The Nature Conservancy (TNC) contracted with Winrock International for acquisition of high resolution color-infrared aerial videography (CIR-AV) (Ranging from 10 cm, to 50 cm pixels, 0.5-km extent along-track, and 1-km swath width) (similar to Brown et al., 2005). These data were acquired during a field campaign from the 14th to the 18th of April in 2003. Areas within the aerial videography that corresponded to EO-1 Hyperion hyperspectral imagery and Landsat data were used to identify a sample of low-stature liana tangles and forests that guided mapping of liana forest patches. Low liana tangles were clearly distinguishable as homogenous areas of bright green vegetation among the more varied canopies of larger trees in the high-resolution CIR-AV images. Unlike other vegetation, liana canopies drape like a horizontal blanket over other vegetation, form columnar "towers" over emergent trees that cast distinctively columnar shadows, form linear linkages from one tree canopy to another and drape from high-canopy forest edges down to low-liana dominated patches. These videography image mosaics are being archived in the format provided by Winrock International, as either .TIF or .IMG raster files (ERDAS Imagine format) and associated metadata. When georeferencing information is available in the image header, the map projection is datum WGS84, UTM zone 20S. This archive contains image mosaics with the original names provided by Winrock International. The bulk of the original imagery is archived in the lab of Professor Phil Townsend at the University of Wisconsin. The subset of images archived here were retrieved off of CD or DVD in June 2019. Additional videography data may be added to this archive in the future from storage at the University of Wisconsin.<br>
DOI: 10.17632/9vwy7ww885
title: Object_Detection

description: is
DOI: 10.17632/mpy85ns82z
title: Afaan Oromo Text to Speech Synthesis dataset

description: Afaan Oromo Text to Speech Synthesis dataset is a public domain speech dataset consisting of 8,076 short audio clips of a single male speaker reading sentences collected from legitimate sources such as News Media sources, Non-fiction books, and Afaan Oromo Holy bible. A transcription and its normalized text are provided for each clip. After two weeks of the audio recording process, a total of 17 hours of recorded speech data that corresponded to a total of 8076 recorded .wav files was created. File Format Metadata is provided in metadata.csv. This file consists of one record per line, delimited by the pipe character. The fields are: ID: this is the name of the corresponding .wav file Transcription: words spoken by the reader (UTF-8) Normalized Transcription: transcription with numbers, ordinals, and monetary units expanded into full words (UTF-8). Each audio file is a single-channel 16-bit PCM WAV with a sample rate of 22050 Hz.
DOI: 10.17632/gs64pw256c
title: Hemoglobin and Recovery from Disability after Spine Surgery (SPINEREG; PI: M Briguglio)

description: Raw data of the study exploring the potential of preoperative hemoglobin for predicting clinical success after spine surgery. The dataset was used to write the article "Prediction of Long-Term Recovery from Disability Using Hemoglobin-Based Models: Results from a Cohort of 1392 Patients Undergoing Spine Surgery", which was published by the journal Frontiers in Surgery in 2022.
DOI: 10.6084/m9.figshare.5306875.v1
title: Filovirus and Bats Occurrence coordinates for Uganda

description: This dataset was used as occurrence points to develop risk map for filovirus outbreaks in Uganda
DOI: 10.17632/m4hhfk3tw7
title: Senescence of endplate osteoclasts induces sensory innervation and spinal pain

description: Spinal pain affects individuals of all ages and is the most common musculoskeletal problem globally. Its clinical management remains a challenge as the underlying mechanisms leading to it are still unclear. Here, we report that greater numbers of senescent osteoclasts (SnOCs) are observed in mouse models of spinal hypersensitivity, like lumbar spine instability (LSI) or aging, compared to controls. The larger population of SnOCs is associated with induced sensory nerve innervation, as well as the growth of H-type vessels, in the porous endplate. We show that deletion of senescent cells by administration of the senolytic drug Navitoclax (ABT263) results in significantly less spinal hypersensitivity, spinal degeneration, porosity of the endplate, sensory nerve innervation and H-type vessel growth in the endplate. We also show that there is greater SnOC-mediated secretion of Netrin-1 and NGF, two well-established sensory nerve growth factors, compared to non-senescent OCs. These findings suggest that pharmacological elimination of SnOCs may be a potent therapy to treat spinal pain.
DOI: 10.17632/snwtjhx7h3
title: Data for: Macrophage polarisation associated with atherosclerosis differentially affects their capacity to handle lipid

description: Total mRNA sequencing of in vitro polarised, human monocyte-derived macrophage phenotypes. Polarised with IFNγ+LPS, IL–4, IL–10, oxPAPC and CXCL4, compared to unpolarised control. Averaged from separate sequencing of 8 healthy human donors.
DOI: 10.17632/f77brpmvhc
title: CircPRKAA1 activates a Ku80/Ku70/SREBP-1 axis driving de novo fatty acid synthesis in cancer cells

description: Many metabolism-related genes undergo alternative splicing to generate circular RNAs although their functions remain poorly understood. Here we report that circPRKAA1, a circRNA derived from the α1 subunit of AMPK, fulfils a fundamental role in maintaining lipid homeostasis. CircPRKAA1 expression facilitates fatty acid synthesis and promotes lipid storage through two coordinated functions. First, circPRKAA1 promotes a tetrameric complex between the Ku80/Ku70 heterodimer and the mature form of sterol regulatory element-binding protein-1 (mSREBP-1) to enhance the stability of mSREBP-1. Secondly, circPRKAA1 selectively binds to the promoters of the ACC1, ACLY, SCD1 and FASN genes to recruit mSREBP-1, upregulating their transcription and increasing fatty acid synthesis to promote cancer growth. Moreover, circPRKAA1 biogenesis is negatively regulated by AMPK activity with lower AMPK activation in hepatocellular carcinoma tissues frequently associated with elevated circPRKAA1 expression. Together, this work identifies circPRKAA1 as an integral element of AMPK-regulated reprogramming of lipid metabolism in cancer cells.
This dataset contains the raw data of our study.
DOI: 10.17632/rr4rzzrjfc
title: Machine Learning for Prediction of Glycemic Control in Diabetes Mellitus

description: This study aims to predict glycemic control status three years after diagnosis and document the most important factors for glycemic control in diabetes mellitus. The data belongs to the people living in Istanbul. We identified newly diagnosed diabetes mellitus patients in Istanbul Province in 2017. The criteria for having diabetes were a diabetes diagnosis (ICD-10 codes E10-E14) or prescription of antidiabetic medications (except metformin) or having an HbA1c over 6.5. In addition, all the diabetic patients were checked if they had initial serum creatinine, lipid profile, at least four HbA1c measurements (roughly once a year). The patients were divided into two groups according to their profile of HbA1c levels; under control (the last two HbA1c values are under 7) or uncontrolled.
id: Patient id no
HbA1c: Serum level at diagnosis (%)
Hba1c_change: %, (level at 1st year-level at diagnosis)
sex: 1: female, 2: male
age: years
LDL: mg/dL, level at diagnosis
Cholesterol: mg/dL, level at diagnosis
HDL: mg/dL, level at diagnosis
Creatinine: mg/dL, level at diagnosis
Triglyceride: mg/dL, level at diagnosis
infectious_diseases;Malign_neoplasms;Obesity;Thyroid_dis;neoplasms_unknown;anemia;vitamin_deficiency;lipoprotein_met_dis;hematologic_dis;endocrine_other;bipolar_affective_dis;depression;anxiety_dis;Other_mental_dis;neuropathies;diabetic_nueropathy;nervous_sys_dis;cataract;retinopathy;refraction_dis;impacted_cerumen;tinnitus_h93_1;eye_other;otitis_externa_h60;mastoid_h60_h95;hypertension_i10;ischemic_heart_dis;cardiomyopathies;cerebrovascular;other_circulatory;respiratory_sys;oral_dis;gastro_oes_reflux;dyspepsia;digestive_sys_dis;skin_dis;musculoskeletal_dis;nephropaties;kidney_failure;other_genitourinary;pregnancy;birth;ceserian_multiple;other_pregnancy: 1: present in the first year of diagnosis, 0: absent in the first year of diagnosis
digestive_drugs;antiobesity;other_digestive;hematologic_drugs;cardiovascular_drugs;lipid_modifying;dermatologic_drugs;gynecologic_drugs;sex_hormones;systemic_hormones;glucagon;calcium_homeostasis_drugs;antiinfectives;vaccines;antineoplastics;endocrin_drugs;immunostimulants;immunosupresants;musculosceletal_drugs;anesthetics;analgesics;antiepileptics;antiparkinson;antipsychotics;anxiolytics;pshycoanaleptics;other_nervous_drugs;antiparasitic;respiratory_sys_drugs;eye_ear_drugs;various_drugs: 1: prescribed in the first year of diagnosis, 0: not prescribed in the first year of diagnosis.
akarboz;dapagliflozin;eksenatid;gliklazid;glimepirid;glipizid;linagliptin;nateglinid;pioglitazon_hcl;repaglinide;saksagliptin;sitagliptin;vildagliptin: prescribed amount in the first year after diagnosis (gram/year)
insulin_aspart;insulin_detemir;insulin_glarjin;insulin_glusilin;insulin_lispro;insulin_nph;insulin_reguler: prescribed amount in the first year after diagnosis (1000IU/year)
metformin_hcl: prescribed amount in the first year after diagnosis (kg/year)
Glycemic_control: 0: Under control, 1: Poor control
DOI: 10.6084/m9.figshare.16780987.v3
title: Processed_QC_approved_normalised_expr_TCGA-PRAD

description: Processed (sequencing reads aligned to the GRCh37 reference genome with TopHat using Bowtie), QC-approved (FastQC and htseq-qa), annotated (Htseq-count) and normalised expression data from TCGA-PRAD project (https://portal.gdc.cancer.gov/repository?filters={"op":"and","content":[{"content":{"field":"cases.primary_site","value":["prostate gland"]},"op":"in"},{"content":{"field":"cases.project.program.name","value":["TCGA"]},"op":"in"},{"content":{"field":"cases.project.project_id","value":["TCGA-PRAD"]},"op":"in"},{"op":"in","content":{"field":"files.data_format","value":["bam"]}},{"content":{"field":"files.experimental_strategy","value":["RNA-Seq"]},"op":"in"},{"op":"in","content":{"field":"files.platform","value":["illumina"]}}]}) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.17632/3sgd8js2zd
title: Replication Files for "Economic and Policy Uncertainty: Aggregate Export Dynamics and the Value of Agreements"

description: Replication Files for "Economic and Policy Uncertainty: Aggregate Export Dynamics and the Value of Agreements"
DOI: 10.17632/hb9c5wd8wv
title: Impact Of The Absence Of A Parental Figure On Decision Making In Adolescents, To Become Independent

description: In this research carried out in Santo Domingo, Dominican Republic, it will respond to the objectives: identify the level of communication skills, style of family dynamics and be able to identify the level of Self Differentiation. Non-experimental design study, exploratory and descriptive scope; mixed approach. A Field Diary was applied where psychographic information was collected from a sample of 61 adolescents. The indicators are: age, number of children, marital status, pregnancy status, level of education, during childhood in care they received gender violence, abandonment and emotional abuse from absent parents in the development of the life cycle. The results of the instruments: The Family Communication Scale, composed of two items with transversal characteristics: Cohesion obtained low results with a detached profile, Adaptability obtained high results with a rigid profile. The results of the Family Satisfaction Scale, both items presented measures of Cohesion with high percentages, the trend relationships were unrelated - separate; the item Adaptability with high profile chaotic - unbalanced measures. The Scale of Differentiation of the Self, the set of subscales correspond to the deep level of the Self  of profiles is scarce, the Fusion with Others of profiles is poorly defined and less intense, the Emotional Reactivity the characteristics of harmony are omitted, presenting an intense low level, Emotional Disconnection with a negative result. Representative principles and convictions of emotional immaturity of the Differentiation of the Self, based on the scientific theories supporting this research. 

Keywords: Adolescent, parental absence; communication; family relationship; differentiation.

Hipótesis: The importance of this research will be based on showing the relevant aspects, to identify the impact of the absence of the parental figure in the family, and how this is reflected in the decision-making to become independent in adolescents, the importance of communication through of the construction of attachment, skills and domestic values, the Differentiation of the Self, according to the environment and the dynamics of socialization elements, personal, family and social values. From the previous premises, the following formulation of the problem is established where our hypothesis is based on: How does the absence of a parental figure impact the decision-making of adolescents to become independent who attend the Pediatric Foundation for a Tomorrow?
DOI: 10.17632/65f4f4j3mg
title: Data for " Thermoelastic Properties of Seifertite at High Pressures and Temperatures: Implications for Negative Velocity Discontinuities in the D'' layer"

description: The thermoelastic properties of seifertite under high-temperature and high-pressure conditions
DOI: 10.17632/d3nc72r46h
title: original blot for western blot

description: original blot for western blot
DOI: 10.17632/8xswmxnfrf
title: Climate change data of Jordan

description: The data include some monthely weather variables of Jordan for years 2014-2022
DOI: 10.17632/tbp6m4jyz5
title: Molecular Dynamics Simulation of Aspirin with A2 Phospholipase

description: This series of files were used in the preparation of a moelcular dynamics simulation of Aspirin with the A2 phospholipase receptor to analyse and investigate the behaviour of this interaction.The simulation was conducted using the Gromacs software and the CHARMM36 force field.
DOI: 10.17632/vphzgjshgm
title: Surface water quality at Ashfield Flats Reserve, Western Australia

description: Elemental (including Al, As, B, Ba, Ca, Co, Cr, Cu, Fe,Gd, K, La, Mg, Mn, Mo, Na, Nd, Ni, P, S, Si, Sr, V, Zn) concentrations, selected nutrient ion concentrations (nitrate+nitrite (NOx), filterable reactive phosphate (FRP)), pH, electrical conductivity, Longitude-Latitude and UTM Zone 50 coordinates, sampling strata, and sample identification codes for 172 samples of surface water collected in 2019, 2020, and 2021 from Ashfield Flats Reserve, an urban nature reserve in Western Australia.
Ashfield Flats Reserve (approx. 40 ha) is listed as a Western Australian Bush Forever Site (No. 214) and fringes the Swan-Canning Estuary. It is also listed in the Directory of Important Wetlands in Australia and contained a threatened ecological community of temperate saltmarsh plant species. It is the largest remaining salt marsh in the Swan-Canning Estuary, but is impacted by altered hydrology, several stormwater drains, and poor water quality from historical groundwater contamination. 
Sampling and analysis was conducted to assess the severity and extent of contamination of surface water with trace elements and nutrients. In particular it was of interest whether the water quality in wetland ponds was affected by stormwater drains which cross the reserve, and to what extent mixing of drain water with estuarine water affected water quality.
DOI: 10.17632/7gg9ps825d
title: Gams Code for Decomposed Dual Variables Calculation: 24-bus Test System (Case 1)

description: Gams Code for the 24-bus test system Case 1 related to the following research article: Dual variable decomposition to discriminate the cost imposed by inflexible units in electricity markets
DOI: 10.17632/ht6w2ndk46
title: The Effects of Obesity and Metabolic Abnormalities on Severe COVID-19-related Outcomes after Vaccination: A Population-Based Study. Fan et al.

description: Breakthrough SARS-CoV-2 infections of vaccinated individuals are being reported globally, resulting in an increased risk of hospitalization and death among such patients. Therefore, it is crucial to identify the modifiable risk factors that may affect the protective efficacy of vaccine use against the development of severe COVID-19 and thus to initiate early medical interventions. Here, in population-based studies using the UK Biobank database and the 2021 National Health Interview Survey (NHIS), we analyzed 20,362 participants aged 50 years or older and 2,588 aged 18 years or older from both databases who tested positive for SARS-COV-2, of whom 33.1% and 67.7% received one or more doses of vaccine, respectively. In the UK Biobank, participants are followed from the vaccination date until Oct. 18, 2021. We found that obesity and metabolic abnormalities (namely, hyperglycemia, hyperlipidemia and hypertension) were modifiable factors for severe COVID-19 in vaccinated patients (All P < .05). When metabolic abnormalities were present, regardless of obesity, the risk of severe COVID-19 was higher than that of metabolically normal individuals (All P < .05). Moreover, pharmacological interventions targeting such abnormalities (namely, antihypertensive (adjusted hazard ratio (aHR) .64, 95% CI .48-.86; P = .003), glucose-lowering (aHR .55, 95% CI .36-.83; P = .004) and lipid-lowering treatments (aHR .50, 95% CI .37-.68; P < .001)) were significantly associated with a reduced risk for this outcome. These results show that more proactive health management of patients with obesity and metabolic abnormalities is critical to reduce the incidence of severe COVID-19 after vaccination.
DOI: 10.17632/5ss54b9bwh
title: Quantifying voyage optimisation with wind propulsion for short-term CO2 mitigation in shipping.

description: Data availability description

This study quantifies the interaction between wind propulsion and voyage optimisation to reduce carbon emissions in the global shipping sector. The repository contains the following folders: “Model code”, “Panamax ship performance files” and “Results and figure data”.

First, the model uses the “create_batch_input_files.py” to split the simulations by month, route, ship type (wind-assist/reference) and simulation type (GCR/optimised), defines the constants for each batch of simulations and saves to a text file. Main.py then runs the sequential steps of the model as follows:

1.	Load input variables from the batch text files (uses “my_constants.py”)
2.	Loop across the month in the specified time steps
3.	Load the u and v components of wind from the ECMWF ERA-Interim dataset and filter using GSHHS data (uses “wind_data_file_name.py”, “load_wind_data.py” and “filter_grid.py”)
4.	Create the GCR grid and the three-dimensional spatial grid (if using) and calculate the wind speed and wind angle at each grid point (add the weather) (uses “gcr_calc.py”, “dp_grid_three_d.py”, “add_wind_data.py” and “wind_class.py”)
5.	Calculate the fuel consumption of the reference ship with no sails at 12 knots and the fuel consumption of the wind-assisted ship on the out and return legs of EITHER
a.	the GCR or
b.	the optimised voyage
for the input route and all arrival times. Also tracks the currents using NOAA current data (uses “route_calcs.py”, “dp_algorithm_three_d.py”, “ship_model_integration.py”, “land_avoidance.py”, “functions.py” and “load_current_data.py”)
6.	Calculate the fuel savings of the wind-assisted ship relative to the reference ship at 12 knots on either the GCR or the optimised voyage
7.	Save the data

The Panamax ship performance files folder stores the data for the Panamax ship performance. Data is stored for ship speeds from 8 to 13 knots in intervals of 1 knot. Data is stored for both the wind-assisted ship with four Flettner rotors installed, and a reference ship with no Flettner rotors installed. A flag file is also included for each, which describes the speed state of the ship (whether the sails are providing full power and need to depower, or whether the ship can’t physically maintain the speed).

The Results and figure data files contains the source data for the results, in Excel format.
DOI: 10.17632/yd3nn96zsm
title: Data for: Evolutionary Learning Based Simulation Optimization for Stochastic Job Shop Scheduling Problems

description: The Stochastic Job shop Scheduling Problem results Dateset proposed by Ghasemi et.al.
DOI: 10.6084/m9.figshare.23607579.v1
title: patient06.rar

description: A Patient with fundus images that taken by Ret-cam.