cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3718198_d12.v1
title: Additional file 9 of Large-scale gene network analysis reveals the significance of extracellular matrix pathway and homeobox genes in acute myeloid leukemia: an introduction to the Pigengene package and its applications

description: Supplementary Data 1. DNA-methylation. The DNA methylation of MMP9, MMP8, and MMP25 genes in TCGA dataset are available as part of the online supplementary materials. The two sheets include the patient barcodes for 194 AML and 368 control samples. The Î˛ values were reported at cg04656101 (equivalent to chr20:44,645,014 in hg19), cg01092036 (chr11:102,595), and cg02680314 (chr16:3,097,388), respectively (Additional file 1: Figure S9b). (XLS 102 kb)
DOI: 10.6084/m9.figshare.c.3718198_d12
title: Additional file 9 of Large-scale gene network analysis reveals the significance of extracellular matrix pathway and homeobox genes in acute myeloid leukemia: an introduction to the Pigengene package and its applications

description: Supplementary Data 1. DNA-methylation. The DNA methylation of MMP9, MMP8, and MMP25 genes in TCGA dataset are available as part of the online supplementary materials. The two sheets include the patient barcodes for 194 AML and 368 control samples. The Î˛ values were reported at cg04656101 (equivalent to chr20:44,645,014 in hg19), cg01092036 (chr11:102,595), and cg02680314 (chr16:3,097,388), respectively (Additional file 1: Figure S9b). (XLS 102 kb)
DOI: 10.6084/m9.figshare.c.3718273_d5
title: Additional file 5: of Bacterial protein meta-interactomes predict cross-species interactions and protein function

description: Conserved interactors of unclear function. (XLS 29 kb)
DOI: 10.6084/m9.figshare.c.3718291_d2.v1
title: Additional file 2: of Network reconstruction of the mouse secretory pathway applied on CHO cell transcriptome data

description: Cytoscape input file. Cytoscape_functional-secretory-network. (XML 6329 kb)
DOI: 10.6084/m9.figshare.c.3718273_d5.v1
title: Additional file 5: of Bacterial protein meta-interactomes predict cross-species interactions and protein function

description: Conserved interactors of unclear function. (XLS 29 kb)
DOI: 10.6084/m9.figshare.c.3718291_d2
title: Additional file 2: of Network reconstruction of the mouse secretory pathway applied on CHO cell transcriptome data

description: Cytoscape input file. Cytoscape_functional-secretory-network. (XML 6329 kb)
DOI: 10.6084/m9.figshare.c.3718273_d6.v1
title: Additional file 6: of Bacterial protein meta-interactomes predict cross-species interactions and protein function

description: Contributions of individual bacterial taxons to the consensus meta-interactome. (XLS 42 kb)
DOI: 10.6084/m9.figshare.c.3718273_d6
title: Additional file 6: of Bacterial protein meta-interactomes predict cross-species interactions and protein function

description: Contributions of individual bacterial taxons to the consensus meta-interactome. (XLS 42 kb)
DOI: 10.15468/dl.k9hu3k
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Careproctus furcellus Gilbert & Burke, 1912",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038384-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26030/jm59-zy54
title: Multi-modal transcriptional and chromatin accessibility analysis of brains from mice flown on the RR-3 mission

description: The Rodent Research-3 (RR-3) mission was sponsored by the pharmaceutical company Eli Lilly and Co. and the Center for the Advancement of Science in Space to study the effectiveness of a potential countermeasure for the loss of muscle and bone mass that occurs during spaceflight. Twenty BALB/c, 12-weeks old female mice (ten controls and ten treated) were flown to the ISS and housed in the Rodent Habitat for 39-42 days. Twenty mice of similar age, and matching sex and strain were used for ground controls housed in identical hardware and matching ISS environmental conditions. Basal controls were housed in standard vivarium cages. Spaceflight, ground controls and basal groups had blood collected, then were euthanized, had one hind limb removed, and finally whole carcasses were stored at -80 C until dissection. All mice in this data set received only the control/sham injection. Brain samples from three flight and three ground control animal groups were cut in half between hemispheres. One hemisphere of each brain was used for generating spatially resolved transcriptional profiling data. Hemispheres were cryosectioned so that 2 consecutive sections from the hippocampus of each brain was placed on Visium Gene Expression arrays. Samples were fixed, stained with Hematoxylin and Eosin and imaged. Imaging was followed by tissue permeabilization to release mRNA molecules from cells for capture onto the array surface. Subsequently, following the 10XGenomics Visium Gene Expression protocol, Spatial Transcriptomics RNA-seq libraries were prepared and sequenced. The other hemisphere of each brain was used for single nuclei RNA-seq and ATAC-seq using the 10X Multiome protocol. In addition, bulk RNA-seq (ribodepleted, target depth of 60 M clusters, PE 150 bp) was performed from a pool of RNA extracted from 10-20 sections from each of 3 flight and 3 ground control samples.
DOI: 10.6084/m9.figshare.c.3718318_d2
title: Additional file 2: of Delineating functional principles of the bow tie structure of a kinase-phosphatase network in the budding yeast

description: KP-Net phosphorylation and dephosphorylation interactions: Phosphorylation and dephosphorylation interactions (PDI) that were included in the KP-Net and the experimental methods that validated them with the Pubmed references of the articles in which PDIs were reported. The KID database pipeline was used to score and annotate these interactions (Additional file 1: Supplementary Methods). (XLSX 280Â kb)
DOI: 10.6084/m9.figshare.c.3718318_d3
title: Additional file 3: of Delineating functional principles of the bow tie structure of a kinase-phosphatase network in the budding yeast

description: Predicted kinases implicated in the HOG pathway: The kinase-substrate interactions that were predicted to be implicated in osmotic shock in this study. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3718300_d7.v1
title: Additional file 7: of IRFinder: assessing the impact of intron retention on mammalian gene expression

description: List of intronic coordinates used to detect enriched motifs associate with IR. (XLS 180Â kb)
DOI: 10.6084/m9.figshare.c.3718300_d7
title: Additional file 7: of IRFinder: assessing the impact of intron retention on mammalian gene expression

description: List of intronic coordinates used to detect enriched motifs associate with IR. (XLS 180Â kb)
DOI: 10.6084/m9.figshare.c.3718318_d4
title: Additional file 4: of Delineating functional principles of the bow tie structure of a kinase-phosphatase network in the budding yeast

description: Kinase consensus phosphorylation sites: The consensus phosphorylation sites of kinases and their evidence in the literature. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3718327_d8
title: Additional file 5 of Predicting protein-binding regions in RNA using nucleotide profiles and compositions

description: 6 test datasets with different ratios of positive to negative instances. 6 test datasets with different ratios of positive to negative instances (called 1:1, 1:2, 1:4, 1:6, 1:8 and 1:10 test datasets). (XLSX 1208 kb)
DOI: 10.6084/m9.figshare.c.3718342_d2.v1
title: Additional file 2: of Systematic identification of an integrative network module during senescence from time-series gene expression

description: List of the identified common network information (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3718342_d2
title: Additional file 2: of Systematic identification of an integrative network module during senescence from time-series gene expression

description: List of the identified common network information (XLSX 30 kb)
DOI: 10.15468/dl.w5xvwt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Careproctus gilberti Burke, 1912",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038385-241126133413365/datasets/export for details.
DOI: 10.15468/dl.8yftd4
title: Occurrence Download

description: A dataset containing 3770 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bombus consobrinus Dahlbom, 1832"
 ]
}

 The dataset includes 3770 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038386-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3719626_d1.v1
title: Additional file 1: Table S1. of Mutations of CREBBP and SOCS1 are independent prognostic factors in diffuse large B cell lymphoma: mutational analysis of the SAKK 38/07 prospective clinical trial cohort

description: Statistics of high-throughput sequencing and variant calling. Table S2. Somatic mutations detected by high-throughput sequencing in 76 cases of primary DLBCL. (XLSX 384Â kb)
DOI: 10.6084/m9.figshare.c.3719626_d1
title: Additional file 1: Table S1. of Mutations of CREBBP and SOCS1 are independent prognostic factors in diffuse large B cell lymphoma: mutational analysis of the SAKK 38/07 prospective clinical trial cohort

description: Statistics of high-throughput sequencing and variant calling. Table S2. Somatic mutations detected by high-throughput sequencing in 76 cases of primary DLBCL. (XLSX 384Â kb)
DOI: 10.6084/m9.figshare.c.3719632_d3.v1
title: Additional file 3: of Analysis of psychometric properties of the modified SETQ tool in undergraduate medical education

description: Master sheet data. (XLS 596 kb)
DOI: 10.6084/m9.figshare.c.3719674_d1.v1
title: Additional file 1: Table S5. of Targeted temperature management in cardiac arrest: survival evaluated by propensity score matching

description: Distribution of the presumed cause of cardiac arrest before and after matching. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3719674_d1
title: Additional file 1: Table S5. of Targeted temperature management in cardiac arrest: survival evaluated by propensity score matching

description: Distribution of the presumed cause of cardiac arrest before and after matching. (XLSX 10 kb)
DOI: 10.5281/zenodo.14511407
title: Catchment properties
DOI: 10.6084/m9.figshare.c.3719683_d1.v1
title: Additional file 1: Table S1. of Clinically proven mtDNA mutations are not common in those with chronic fatigue syndrome

description: Contains the mtDNA variants from participants. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3719683_d1
title: Additional file 1: Table S1. of Clinically proven mtDNA mutations are not common in those with chronic fatigue syndrome

description: Contains the mtDNA variants from participants. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3719692_d1.v1
title: Additional file 1: Tables S1-S6. of Myeloid C/EBPβ deficiency reshapes microglial gene expression and is protective in experimental autoimmune encephalomyelitis

description: List the genes significantly up-regulated (tables 1, 3 and 5) or down-regulated (tables 2, 4 and 6) by the absence of C/EBPβ in control (tables 1, 2), LPS-treated (tables 3, 4) and LPS+IFNγ-treated (tables 5, 6) primary microglial cultures. These data were obtained by RNAseq as described in Methods. (ZIP 253 kb)
DOI: 10.6084/m9.figshare.c.3719671_d2.v1
title: Additional file 2: Table S1â  S6. of Late Danubian mitochondrial genomes shed light into the Neolithisation of Central Europe in the 5th millennium BC

description: S1 List of all ancient individuals analyzed in the study and results of library screening, S2 Ancient comparative populations used in PCA and their mitochondrial haplogroups, S3 List of individuals used for FST and MDS, S4 Sequencing results of analyzed samples used for reconstruction of mitochondrial genomes, S5 Mutations against the RSRS as reported by haplofind found in acquired mitochondrial genomes, S6 results of AMOVA. (XLS 185 kb)
DOI: 10.6084/m9.figshare.c.3719671_d2
title: Additional file 2: Table S1â  S6. of Late Danubian mitochondrial genomes shed light into the Neolithisation of Central Europe in the 5th millennium BC

description: S1 List of all ancient individuals analyzed in the study and results of library screening, S2 Ancient comparative populations used in PCA and their mitochondrial haplogroups, S3 List of individuals used for FST and MDS, S4 Sequencing results of analyzed samples used for reconstruction of mitochondrial genomes, S5 Mutations against the RSRS as reported by haplofind found in acquired mitochondrial genomes, S6 results of AMOVA. (XLS 185 kb)
DOI: 10.6084/m9.figshare.c.3719710_d1
title: Additional file 1: of Reliability and acceptability of six station multiple mini-interviews: past-behavioural versus situational questions in postgraduate medical admission

description: Rating rubrics. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3719719_d1.v1
title: Additional file 1 of Quantifying the roles of random motility and directed motility using advection-diffusion theory for a 3T3 fibroblast cell migration assay stimulated with an electric field

description: Additional data. Numerical estimates of transport coefficients. (XLSX 21 kb)
DOI: 10.15468/dl.uc3tdx
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Careproctus melanurus Gilbert, 1892",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038387-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3719698_d2
title: Additional file 2: Table S1. of Mapping the spatial distribution of the Japanese encephalitis vector, Culex tritaeniorhynchus Giles, 1901 (Diptera: Culicidae) within areas of Japanese encephalitis risk

description: Occurrence data used to fit and train the model. The file contains geo-positioned occurrence data obtained from literature searches and GBIF. An â  OBJECTIDâ   is provided for VectorMap data to allow readers to obtain the same records used within this study directly from the source. (.csv) (CSV 709 kb)
DOI: 10.6084/m9.figshare.c.3719716_d2.v1
title: Additional file 2: of Standardizing effect size from linear regression models with log-transformed variables for meta-analysis

description: Excel template to transform original effect size using the proposed formulae. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3719716_d2
title: Additional file 2: of Standardizing effect size from linear regression models with log-transformed variables for meta-analysis

description: Excel template to transform original effect size using the proposed formulae. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3719719_d1
title: Additional file 1 of Quantifying the roles of random motility and directed motility using advection-diffusion theory for a 3T3 fibroblast cell migration assay stimulated with an electric field

description: Additional data. Numerical estimates of transport coefficients. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3719722_d1.v1
title: Additional file 1: Table S1. of 
                     YBX1 gene silencing inhibits migratory and invasive potential via CORO1C in breast cancer in vitro

description: Sequences of primers used for qPCR. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3719722_d1
title: Additional file 1: Table S1. of 
                     YBX1 gene silencing inhibits migratory and invasive potential via CORO1C in breast cancer in vitro

description: Sequences of primers used for qPCR. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3719722_d2
title: Additional file 2: Table S2. of 
                     YBX1 gene silencing inhibits migratory and invasive potential via CORO1C in breast cancer in vitro

description: Non-coding genes that were differentially expressed following YB-1 silencing in MDA-MB-231 cells. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3719776_d1.v1
title: Additional file 1: of Bioinformatics identification of new targets for improving low temperature stress tolerance in spring and winter wheat

description: Selected and significant transcription factor gene interactions data inferred by the linear model and used as input to the DREM algorithm. The first column corresponds to the source (transcription factor). The second column corresponds to the target (gene or transcription factor). The third column corresponds to the type of interactions, positive (+1) or negative (-1) interactions. (TXT 26 kb)
DOI: 10.6084/m9.figshare.c.3719761_d2.v1
title: Additional file 2: Tables S1â  S8. of A data-driven approach links microglia to pathology and prognosis in amyotrophic lateral sclerosis

description: Contain gene lists used in the analysis. (XLSX 317Â kb)
DOI: 10.6084/m9.figshare.c.3719761_d2
title: Additional file 2: Tables S1â  S8. of A data-driven approach links microglia to pathology and prognosis in amyotrophic lateral sclerosis

description: Contain gene lists used in the analysis. (XLSX 317Â kb)
DOI: 10.6084/m9.figshare.c.3719776_d1
title: Additional file 1: of Bioinformatics identification of new targets for improving low temperature stress tolerance in spring and winter wheat

description: Selected and significant transcription factor gene interactions data inferred by the linear model and used as input to the DREM algorithm. The first column corresponds to the source (transcription factor). The second column corresponds to the target (gene or transcription factor). The third column corresponds to the type of interactions, positive (+1) or negative (-1) interactions. (TXT 26 kb)
DOI: 10.6084/m9.figshare.c.3719794_d1
title: Additional file 1: of Lamivudine/dolutegravir dual therapy in HIV-infected, virologically suppressed patients

description: DTG-3TC Anonymous db for paperR1. (XLSX 82.1 kb)
DOI: 10.6084/m9.figshare.c.3719794_d1.v1
title: Additional file 1: of Lamivudine/dolutegravir dual therapy in HIV-infected, virologically suppressed patients

description: DTG-3TC Anonymous db for paperR1. (XLSX 82.1 kb)
DOI: 10.6084/m9.figshare.c.3719785_d2
title: MOESM2 of Persistent lymphopenia is a risk factor for ICU-acquired infections and for death in ICU patients with sustained hypotension at admission

description: Additional file 2. Details on the model fitting propensity score used.
DOI: 10.15468/dl.u7298q
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Careproctus micropus (Günther, 1887)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 60 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038388-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3719803_d2
title: Additional file 2: of A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank

description: Profile of nmrstarlib execution. (TXT 27 kb)
DOI: 10.6084/m9.figshare.c.3719803_d4.v1
title: Additional file 4: of A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank

description: List of failed NMR-STAR 2.1 files for PyStarLib. (JSON 917 bytes)
DOI: 10.6084/m9.figshare.c.3719803_d4
title: Additional file 4: of A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank

description: List of failed NMR-STAR 2.1 files for PyStarLib. (JSON 917 bytes)
DOI: 10.6084/m9.figshare.c.3719803_d5
title: Additional file 5: of A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank

description: List of failed NMR-STAR 3.1 files for PyStarLib. (JSON 8 kb)
DOI: 10.6084/m9.figshare.c.3719803_d6
title: Additional file 6: of A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank

description: Fragments of failed NMR-STAR 2.1 files for PyStarLib. (TXT 16 kb)
DOI: 10.6084/m9.figshare.c.3719806_d2.v1
title: Additional file 2: Table S1. of Increased genomic burden of germline copy number variants is associated with early onset breast cancer: Australian breast cancer family registry

description: CNV data for cases and controls. Chromosome coordinates given according to Hg18. (XLSX 819 kb)
DOI: 10.6084/m9.figshare.c.3719803_d7
title: Additional file 7: of A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank

description: Fragments of failed NMR-STAR 3.1 files for PyStarLib. (TXT 149 kb)
DOI: 10.6084/m9.figshare.c.3719806_d2
title: Additional file 2: Table S1. of Increased genomic burden of germline copy number variants is associated with early onset breast cancer: Australian breast cancer family registry

description: CNV data for cases and controls. Chromosome coordinates given according to Hg18. (XLSX 819 kb)
DOI: 10.6084/m9.figshare.c.3720535_d1
title: Additional file 1 of Using simulated fluorescence cell micrographs for the evaluation of cell image segmentation algorithms

description: The zip archive contains real images showing protoplasts. (ZIP 4 kb)
DOI: 10.6084/m9.figshare.c.3720535_d2
title: Additional file 2 of Using simulated fluorescence cell micrographs for the evaluation of cell image segmentation algorithms

description: The zip archive contains real images showing B cell nuclei and cytoskeleton. (ZIP 12390 kb)
DOI: 10.5281/zenodo.14511409
title: Borough of Rutledge Ordinances 2024-12-17

description: Files from the 2024 recodification for the Borough of Rutledge covering 2001-2024. Some additional files predating 2001 are also included here.
DOI: 10.5281/zenodo.14511410
title: Borough of Rutledge Ordinances 2024-12-17

description: Files from the 2024 recodification for the Borough of Rutledge covering 2001-2024. Some additional files predating 2001 are also included here.
DOI: 10.6084/m9.figshare.c.3720535_d3
title: Additional file 3 of Using simulated fluorescence cell micrographs for the evaluation of cell image segmentation algorithms

description: The zip archive contains real images showing macrophages. (ZIP 28979 kb)
DOI: 10.6084/m9.figshare.c.3720535_d5.v1
title: Additional file 5 of Using simulated fluorescence cell micrographs for the evaluation of cell image segmentation algorithms

description: The zip archive contains simulated images showing protoplasts with corresponding ground truth. (ZIP 72704 kb)
DOI: 10.6084/m9.figshare.c.3720535_d5
title: Additional file 5 of Using simulated fluorescence cell micrographs for the evaluation of cell image segmentation algorithms

description: The zip archive contains simulated images showing protoplasts with corresponding ground truth. (ZIP 72704 kb)