cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11625774
title: TiLV quartet phylogenetic analysis to detect reassortment

description: To look for evidence of reassortment among the TiLV segments, we used the phylogenetic approach developed by Suzuki (2010) for human influenza A viruses. Using the seven TiLV isolates for which we had the full sequence of all ten segments, we selected every possible quartet (i.e. group of four isolates), 35 in total. For each quartet, we constructed ten neighbour-joining trees (one per segment) using the p-distance method with 1000 bootstrap replicates. A quartet can have only three resolved topologies (e.g. pairs A/B + C/D, or A/C + B/D, or A/D + B/C), so we then compared the tree topologies of all ten segments for each quartet and summarised them as a string of digits, representing segments 1-10, showing where the topology differed.<br>Suzuki, Y., 2010. A phylogenetic approach to detecting reassortments in viruses with segmented genomes. Gene 464, 11–16. doi:10.1016/j.gene.2010.05.002
DOI: 10.6084/m9.figshare.11625774.v1
title: TiLV quartet phylogenetic analysis to detect reassortment

description: To look for evidence of reassortment among the TiLV segments, we used the phylogenetic approach developed by Suzuki (2010) for human influenza A viruses. Using the seven TiLV isolates for which we had the full sequence of all ten segments, we selected every possible quartet (i.e. group of four isolates), 35 in total. For each quartet, we constructed ten neighbour-joining trees (one per segment) using the p-distance method with 1000 bootstrap replicates. A quartet can have only three resolved topologies (e.g. pairs A/B + C/D, or A/C + B/D, or A/D + B/C), so we then compared the tree topologies of all ten segments for each quartet and summarised them as a string of digits, representing segments 1-10, showing where the topology differed.<br>Suzuki, Y., 2010. A phylogenetic approach to detecting reassortments in viruses with segmented genomes. Gene 464, 11–16. doi:10.1016/j.gene.2010.05.002
DOI: 10.17028/rd.lboro.11625777.v1
title: WFG Overall Simulation

description: Data set for energy simulation of Water-filled Glass (WFG) facade in 13 cities.<br>
DOI: 10.17028/rd.lboro.11625777.v2
title: WFG Overall Simulation

description: Data set for energy simulation of Water-filled Glass (WFG) facade in 13 cities.<br>
DOI: 10.6084/m9.figshare.11625630.v1
title: Mediation of Self-Compassion and Psychological Resilience in the Relationship Between Social Media Usage and Class Participation Among Prospective Special Needs Teachers in Pakistan

description: Data has been collected from special needs teacher education students enrolled in the universities of Pakistan.
DOI: 10.6084/m9.figshare.11625630.v2
title: Facebook Data

description: Data has been collected from special needs teacher education students enrolled in the universities of Pakistan.
DOI: 10.6084/m9.figshare.11625603
title: data2

description: Data for an MSR paper<br>
DOI: 10.6084/m9.figshare.11625630.v3
title: Facebook Data

description: Data has been collected from special needs teacher education students enrolled in the universities of Pakistan.
DOI: 10.6084/m9.figshare.11625447
title: The Effects of the App HeartBot on the Stress and Emotional Well-Being over a 21-day Challenge

description: The dataset provides data from a study that examines the effectiveness of the HeartBot app on reducing perceived stress and improving overall well-being in participants 14 years and older. This study includes the HeartBot intervention group (n=46) and the wait-listed control group (n=42). Pre and post surveys gain a measure of their stress levels and well-being before and after using the app for 21 days.
DOI: 10.6084/m9.figshare.11625447.v1
title: The Effects of the App HeartBot on the Stress and Emotional Well-Being over a 21-day Challenge

description: The dataset provides data from a study that examines the effectiveness of the HeartBot app on reducing perceived stress and improving overall well-being in participants 14 years and older. This study includes the HeartBot intervention group (n=46) and the wait-listed control group (n=42). Pre and post surveys gain a measure of their stress levels and well-being before and after using the app for 21 days.
DOI: 10.6084/m9.figshare.11624157
title: De novo transcriptome assembly_raw data

description: The "raw" transcriptome assembled was characterized using BLAST against different databases. <br>The archive Transcriptome_blast.xlsx contains the similarity of Trinity transcripts against the non-redundant (nr), Prunus avium (P.avium), Uniprot and RefSeq databases. <br>The Transcriptome_TF.xlsx archive describes the transcripts that codified transcription factor (TFs) and the gene families to which they belong. <br>The Transcriptome_TransDecoder contains the transcripts with an Open Reading Frame (ORF).The Transcriptome_EggNOG.xlsx archive describe the orthology of transcripts. Description, Taxonomy level, GO and KEGG pathway terms are showed.<br>The Transcriptome.fasta contains the nucleotide sequence of all transcripts assembled using Trinity software.<br>
DOI: 10.6084/m9.figshare.11623518
title: Datos originales del artículo de Cruz-Flores et al. 2020. (NDVI)

description: Datos crudos empleados en el artículo.<br>
DOI: 10.6084/m9.figshare.11623518.v1
title: Datos originales del artículo de Cruz-Flores et al. 2020. (NDVI)

description: Datos crudos empleados en el artículo.<br>
DOI: 10.6084/m9.figshare.11622987
title: Quantification

description: This folder contains the TPM, TMM and Counts obtained by RSEM software. Three biological replicates per bud stage (S1, flowering induction,; S2-S4, flower whorls development and D, dormancy) were included.<br>
DOI: 10.6084/m9.figshare.11620518
title: Assembly and annotation of the Adineta vaga L1 genome

description: This dataset includes:<br>1) Diploid genome assembly generated for the <i>A. vaga</i> L1 genome with SPAdes (version 3.6.0) from MiSeq reads (file 'Adineta.vaga.L1.contigs.fasta'). <br>2) Haploid sub-assembly of the <i>A. vaga</i> L1 genome (file 'Adineta.vaga.L1.haploid.segments.fasta'). This is haploid representation of the L1 genome containing mostly non-redundant genomic segments extracted from the L1 diploid contigs. <br>3) Annotation of protein-coding genes produced for the <i>A. vaga</i> L1 diploid contigs in the GTF format (78,303 gene models from 75,877 loci; file 'Adineta.vaga.L1.contigs.annotation.gtf').<br>4) List of gene models from the filtered gene set (file 'Adineta.vaga.L1.contigs.annotation.transcripts.filtered.txt'). This set includes 61,531 gene models retained after filtering aimed at removing pseudogenes and putative annotation errors. For loci with more than one gene model, the longest one is included.<br>5) Coordinates of gene models transferred to the haploid sub-assembly (file 'Adineta.vaga.L1.haploid.segments.transcripts.gtf') in the GTF format (only transcript and CDS feature types are included). Only those gene models that were fully contained within the haploid segments are retained (n = 23,802).
DOI: 10.6084/m9.figshare.11620518.v1
title: Assembly and annotation of the A. vaga L1 genome

description: This dataset includes:<br>1) Diploid genome assembly generated for the <i>A. vaga</i> L1 genome with SPAdes (version 3.6.0) from MiSeq reads (file 'Adineta.vaga.L1.contigs.fasta'). <br>2) Haploid sub-assembly of the <i>A. vaga</i> L1 genome (file 'Adineta.vaga.L1.haploid.segments.fasta'). This is haploid representation of the L1 genome containing mostly non-redundant genomic segments extracted from the L1 diploid contigs. <br>3) Annotation of protein-coding genes produced for the <i>A. vaga</i> L1 diploid contigs in the GTF format (78,303 gene models from 75,877 loci; file 'Adineta.vaga.L1.contigs.annotation.gtf').<br>4) List of gene models from the filtered gene set (file 'Adineta.vaga.L1.contigs.annotation.transcripts.filtered.txt'). This set includes 61,531 gene models retained after filtering aimed at removing pseudogenes and putative annotation errors. For loci with more than one gene model, the longest one is included.<br>5) Coordinates of gene models transferred to the haploid sub-assembly (file 'Adineta.vaga.L1.haploid.segments.transcripts.gtf') in the GTF format (only transcript and CDS feature types are included). Only those gene models that were fully contained within the haploid segments are retained (n = 23,802).
DOI: 10.6084/m9.figshare.11620125
title: 2018 09 20 Field Notes

description: Field notes including image and/or video records.<br>Project order 89a.
DOI: 10.6084/m9.figshare.11620116
title: hgcAB-concatenated-alignment

description: Concatenated alignment of hgcAB to make phylogenetic tree
DOI: 10.6084/m9.figshare.11620125.v1
title: 2018 09 20 Field Notes

description: Field notes including image and/or video records.<br>Project order 89a.
DOI: 10.6084/m9.figshare.11620113
title: hgcB-HMM-profile

description: HMM profile of hgcB marker to search for. Confirm presence by looking if directly downstream of hgcA or within 4-5 ORFs of hgcA
DOI: 10.6084/m9.figshare.11620116.v1
title: hgcAB-concatenated-alignment

description: Concatenated alignment of hgcAB to make phylogenetic tree
DOI: 10.6084/m9.figshare.11620104
title: MENDH-Thermo-annotations

description: Functional annotations of MENDH-Thermo MAG
DOI: 10.6084/m9.figshare.11620107
title: hgcAB-regulator-results

description: Results of putative conserved regulator of hgcAB
DOI: 10.6084/m9.figshare.11620107.v1
title: hgcAB-regulator-resultsUntitled Item

description: Results of putative conserved regulator of hgcAB
DOI: 10.6084/m9.figshare.11620065
title: Canadian men’s visual attention to cisgender women, cisgender men, and transgender women

description: Canadian heterosexual and gay men's self-reported sexual attraction and visual attention to images of nude cisgender women, transgender women who have breasts, transgender women who do not have breasts, cisgender men, and bonobos (a non-sexual comparison) as well as their response to the Modified Attraction to Feminine Male Scale (MAFM), Interest in Visual Sexual Stimuli Scale (IVSS), Sociosexual Orientation Inventory (SOI), and the Modern Homonegativity Scale (MHNS). AR = sexual attraction rating (from 1 = "not at all sexually attracted to 7 = "extremely sexually attracted"); ET = Eye-tracking; TFF = time to first fixation; TFD = total fixation duration; TFC = total fixation count; W = cisgender women; ATW = transgender women who have surgically augmented their breasts; NATW = transgender women who have not surgically augmented their breasts; M = cisgender men; A = ape (bonobos); raw = raw values; std = standardized values
DOI: 10.6084/m9.figshare.11620092
title: Differentially Expressed Genes (DEGs) in floral bud transcriptomes

description: The relative abundance for each transcript and unigene was quantified in the floral bud samples (S1, flowering induction; S2-S4, flower whorls development and D, dormancy) by aligning the reads to the transcriptome assembly using RSEM v1.3.0 software. To identify the differentially expressed genes the Deseq2 1.12.4 software was used. <br>The Summary of DEGs.xlsx archive contains: the "Tables sheet" with tables about the number of DEGs (up- and down-regulated) in sucessive pairwise comparisons of floral buds, GO summary and the number and percentaje of DEGs codifying transcription factors; the "Gene Annotation sheet" with the annotation of DEGs; the Gene Ontology sheet" with the GO terms found for each transcript; the "KEGG sheet" with the KEGG terms found for each transcript; the "Transcription Factor Families" sheet with the description of DEGs codifying transcription factors.The DEGs.fasta archive contains the deduced nucleotide sequences of DEG transcripts.The diff.Expr.matrix... archive contains a heatmap showing the log2 of fold-change of DEGs vs the samples analized (S1-S4 and D floral buds). Yellow and magenta colors represent up- and down-regulated genes, respectively. Scale, representing the signal values, is shown at the top of the figure.<br>The "MADS-box transcripts found during floral bud development in P. avium cv. Bing”.xlsx archive includes the Trinity identification (Trinity #id), MADS-box gene identification (Gene ID, this work), Gene Subfamily, Genbank accession number considering only <i>P. avium</i>, mean value of Transcripts Per Million (TPM) in S1-S4 and Dormancy (D) buds, Translation (Complete/Partial) using TransDecoder, Diferential expression (DEG Yes/No) and if the MADS-box genes was analyzed by qPCR.
DOI: 10.6084/m9.figshare.11620065.v1
title: Canadian men’s visual attention to cisgender women, cisgender men, and transgender women

description: Canadian heterosexual and gay men's self-reported sexual attraction and visual attention to images of nude cisgender women, transgender women who have breasts, transgender women who do not have breasts, cisgender men, and bonobos (a non-sexual comparison) as well as their response to the Modified Attraction to Feminine Male Scale (MAFM), Interest in Visual Sexual Stimuli Scale (IVSS), Sociosexual Orientation Inventory (SOI), and the Modern Homonegativity Scale (MHNS). AR = sexual attraction rating (from 1 = "not at all sexually attracted to 7 = "extremely sexually attracted"); ET = Eye-tracking; TFF = time to first fixation; TFD = total fixation duration; TFC = total fixation count; W = cisgender women; ATW = transgender women who have surgically augmented their breasts; NATW = transgender women who have not surgically augmented their breasts; M = cisgender men; A = ape (bonobos); raw = raw values; std = standardized values
DOI: 10.6084/m9.figshare.11620059
title: UGR Bibliometric reports - Part I

description: Dataset used for the first part of the ARQUS ClusterMap's bibliometric report.
DOI: 10.6084/m9.figshare.11620059.v1
title: UGR Bibliometric reports - Part I

description: Dataset used for the first part of the ARQUS ClusterMap's bibliometric report.
DOI: 10.6084/m9.figshare.11620029
title: UGR Bibliometric reports - Part I

description: Dataset used for the first part of the ARQUS ClusterMap's bibliometric report.<br>
DOI: 10.6084/m9.figshare.11620029.v2
title: UGR Bibliometric reports - Part I

description: Dataset used for the first part of the ARQUS ClusterMap's bibliometric report.<br>
DOI: 10.6084/m9.figshare.11620029.v1
title: UGR Bibliometric reports - Part I

description: Dataset used for the first part of the ARQUS ClusterMap's bibliometric report.<br>
DOI: 10.6084/m9.figshare.11619897
title: PLD_GAM_Suppl_Mat_revised.docx

description: Glycosylphosphatidylinositol-anchored proteins (GPI-AP) with the complete glycolipid anchor attached have previously been shown to be released from the outer plasma membrane leaflet of rat adipocytes in positive correlation to cell size and blood glucose/insulin levels of the donor rats. Furthermore, they are present in rat and human serum, however, at amounts which are lower in insulin-resistant/obese rats compared to normal ones. These findings prompted further evaluation of the potential of full-length GPI-AP for the prediction and stratification of metabolically deranged states. A comparison of the signatures of horizontal surface acoustic waves which were generated by full-length GPI-AP in course of their specific capture by and subsequent dissociation from a chip-based sensor between those from rat serum and those reconstituted into lipidic structures strongly argues for expression of full-length GPI-AP in serum in micelle-like complexes in concert with phospholipids, lysophospholipids and cholesterol. Both the reconstituted and the rat serum complexes were highly sensitive towards mechanical forces, such as vibration. Furthermore, full-length GPI-AP reconstituted into micelle-like complexes represented efficient substrates for cleavage by serum glycosylphosphatidylinositol-specific phospholipase D (GPI-PLD). These findings raised the possibility that the upregulated release of full-length GPI-AP into micelle-like serum complexes from metabolically deranged cells is compensated by elevated GPI-PLD activity. In fact, serum GPI-PLD activity towards full-length GPI-AP in micelle-like complexes, but not in detergent micelles, was positively correlated to early states of insulin resistance and obesity in genetic and diet-induced rat models as well as to the body weight in humans. Moreover, the differences in the degradation of GPI-AP in micelle-like complexes were found to rely in part on the interaction of serum GPI-PLD with an activating serum factor. These data suggest, that serum GPI-PLD activity measured with GPI-AP in micelle-like complexes is indicative of enhanced release of full-length GPI-AP from relevant tissues into the circulation as a consequence of early metabolic derangement in rats and humans.
DOI: 10.6084/m9.figshare.11619846
title: Wales et al. 2020 Stand Data

description: Stand data for Wales et al. 2020 Figs 2 - 6<br>https://doi.org/10.​1016/​j.​foreco.​2020.​117865
DOI: 10.6084/m9.figshare.11619846.v1
title: Wales et al. 2020 Stand Data

description: Stand data for Wales et al. 2020 Figs 2 - 6<br>https://doi.org/10.​1016/​j.​foreco.​2020.​117865
DOI: 10.6084/m9.figshare.11619825
title: Wales et al. 2020 Plot Data

description: Plot data for Wales et al. 2020 Figs 2 - 6<br>https://doi.org/10.​1016/​j.​foreco.​2020.​117865
DOI: 10.6084/m9.figshare.11619825.v1
title: Wales et al. 2020 Plot Data

description: Plot data for Wales et al. 2020 Figs 2 - 6<br>https://doi.org/10.​1016/​j.​foreco.​2020.​117865
DOI: 10.6084/m9.figshare.11619792
title: Network symmetry datasets

description: Datasets associated to 'Exploiting Symmetries in Complex Network Analysis' by Ruben J Sanchez-Garcia<br>Preprint available at https://arxiv.org/abs/1803.06915<br>Please cite this paper if you use or adapt the datasets<br><br>For each dataset, there are five files:<br> .g Edge list in saucy input format (nodes labelled 0 to n-1)<br> .gen List of generators in saucy output format<br> .gd Disjoint-support partition of generators<br> .or List of symmetric motifs with orbits separated by '*'<br> .sm List of symmetric motif types<br>Please see the article for more information. <br>
DOI: 10.6084/m9.figshare.11619618
title: Non-pharmacological labour pain management methods and risk of caesarean section: a retrospective cohort study

description: We collected data from all clinical records of women admitted for delivery at the University Hospital of the Federal University of Uberlandia (HCU-UFU) between January 1, 2013 and December 31, 2017. Age, ethnicity, schooling, parity, gestational age, previous caesarean section, spontaneous labour before admission or induction/augmentation of labour are included in the dataset.
DOI: 10.6084/m9.figshare.11619753.v1
title: Risk of hepatitis with various reintroduction regimens of anti-tubercular therapy: a systematic review and network meta-analysis

description: <b>Objective</b>: To compare risk of hepatotoxicity between various regimens for reintroduction of antitubercular therapy (ATT) in patients with previous episode of ATT hepatitis. <b>Methods</b>: We searched various databases (PubMed, Embase, CENTRAL, Scopus, WoS and LILACS) for studies comparing ATT reintroduction regimens using terms ‘drug-induced liver injury’ and ‘antitubercular drugs’ AND ‘reintroduction’. The reintroduction regimens i.e concomitant (all drugs introduced together), sequential (reintroduction of one drug in full dose followed by another) or incremental (one drug in a low dose and then higher dose followed by next drug) were compared using Bayesian approach for network meta-analysis with random-effect model. Cochrane revised tool was used to assess risk of bias in included studies (RoB 2.0). <b>Results</b>: Four randomized studies with 577 patients were eligible for analysis. Compared with concomitant regimen (baseline comparator), incremental regimen appeared to have lower risk of ATT hepatitis (odds ratio [OR] 0.24; 95% CrI 0.017, 1.2) as also the sequential regimen (OR 0.33; 95% CrI 0.033, 1.7). Rifampicin first and isoniazid first reintroduction regimens were similar via-a-vis recurrence of hepatotoxicity. <b>Conclusion</b>: The sequential and incremental regimen may be better than concomitant regimen in reducing risk of ATT hepatitis although the odds did not achieve statistical significance.
DOI: 10.6084/m9.figshare.11619501
title: Mobile Learning Technology Acceptance and Readiness Among Pre-Service Teachers’ in Pakistan

description: This data set is based on UTAUT model.
DOI: 10.6084/m9.figshare.11619501.v1
title: Mobile Learning Technology Acceptance and Readiness Among Pre-Service Teachers’ in Pakistan

description: This data set is based on UTAUT model.
DOI: 10.6084/m9.figshare.11619432
title: Wales et al. 2020 MetaData / ReadMe File

description: MetaData for Wales et al. 2020 Figs 2 - 6<br>https://doi.org/10.​1016/​j.​foreco.​2020.​117865<br>
DOI: 10.6084/m9.figshare.11619429
title: Test reads for mykrobe predict

description: Small FASTQ file of reads for testing mykrobe predict. These are simulated reads that are identical to the reference genome H37Rv, except for the variant inhA I21T, which implies isoniazid resistance.
DOI: 10.6084/m9.figshare.11619432.v1
title: Wales et al. 2020 MetaData / ReadMe File

description: MetaData for Wales et al. 2020 Figs 2 - 6<br>https://doi.org/10.​1016/​j.​foreco.​2020.​117865<br>
DOI: 10.6084/m9.figshare.11619429.v1
title: Test reads for mykrobe predict

description: Small FASTQ file of reads for testing mykrobe predict. These are simulated reads that are identical to the reference genome H37Rv, except for the variant inhA I21T, which implies isoniazid resistance.
DOI: 10.6084/m9.figshare.11619285
title: 2018 08 08 Field Notes

description: Field notes including image and/or video records.<br>Project order 88a.