cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5077976
title: MEDDOPROF corpus: test set

description: The MEDDOPROF Shared Task tackles the detection of occupations and employment statuses in clinical cases in Spanish from different specialties. Systems capable of automatically processing clinical texts are of interest to the medical community, social workers, researchers, the pharmaceutical industry, computer engineers, AI developers, policy makers, citizen’s associations and patients. Additionally, other NLP tasks (such as anonymization) can also benefit from this type of data. MEDDOPROF has three different sub-tasks: <strong>1) MEDDOPROF-NER</strong>: Participants must find the beginning and end of occupation mentions and classify them as PROFESION (PROFESSION), SITUACION_LABORAL (WORKING_STATUS) or ACTIVIDAD (ACTIVIDAD). <strong>2) MEDDOPROF-CLASS: </strong>Participants must find the beginning and end of occupation mentions and classify them according to their referent (PACIENTE [patient], FAMILIAR [family member], SANITARIO [health professional] or OTRO [other]). <strong>3) MEDDOPROF-NORM</strong>: Participants must find the beginning and end of occupation mentions and normalize them according to a reference codes list. <strong>Please cite if you use this resource:</strong> Salvador Lima-López, Eulàlia Farré-Maduell, Antonio Miranda-Escalada, Vicent Brivá-Iglesias and Martin Krallinger. NLP applied to occupational health: MEDDOPROF shared task at IberLEF 2021 on automatic recognition, classification and normalization of professions and occupations from medical texts. In Procesamiento del Lenguaje Natural, 67. 2021. <pre><code>@article{meddoprof, title={NLP applied to occupational health: MEDDOPROF shared task at IberLEF 2021 on automatic recognition, classification and normalization of professions and occupations from medical texts}, author={Lima-López, Salvador and Farré-Maduell, Eulàlia and Miranda-Escalada, Antonio and Brivá-Iglesias, Vicent and Krallinger, Martin}, journal = {Procesamiento del Lenguaje Natural}, volume = {67}, year={2021}, issn = {1989-7553}, url = {http://journal.sepln.org/sepln/ojs/ojs/index.php/pln/article/view/6393}, pages = {243--256} }</code></pre> <strong>Resources:</strong> - Web - Complete corpus - Training Data - Codes Reference List (for MEDDOPROF-NORM) - Annotation Guidelines MEDDOPROF is part of the IberLEF 2021 workshop, which is co-located with the SEPLN 2021 conference. For further information, please visit https://temu.bsc.es/meddoprof/ or email us at encargo-pln-life@bsc.es MEDDOPROF is promoted by the Plan de Impulso de las Tecnologías del Lenguaje de la Agenda Digital (Plan TL).
DOI: 10.5281/zenodo.4889776
title: MEDDOPROF corpus: test set

description: The MEDDOPROF Shared Task tackles the detection of occupations and employment statuses in clinical cases in Spanish from different specialties. Systems capable of automatically processing clinical texts are of interest to the medical community, social workers, researchers, the pharmaceutical industry, computer engineers, AI developers, policy makers, citizen’s associations and patients. Additionally, other NLP tasks (such as anonymization) can also benefit from this type of data. MEDDOPROF has three different sub-tasks: <strong>1) MEDDOPROF-NER</strong>: Participants must find the beginning and end of occupation mentions and classify them as PROFESION (PROFESSION), SITUACION_LABORAL (WORKING_STATUS) or ACTIVIDAD (ACTIVIDAD). <strong>2) MEDDOPROF-CLASS: </strong>Participants must find the beginning and end of occupation mentions and classify them according to their referent (PACIENTE [patient], FAMILIAR [family member], SANITARIO [health professional] or OTRO [other]). <strong>3) MEDDOPROF-NORM</strong>: Participants must find the beginning and end of occupation mentions and normalize them according to a reference codes list. <strong>Please cite if you use this resource:</strong> Salvador Lima-López, Eulàlia Farré-Maduell, Antonio Miranda-Escalada, Vicent Brivá-Iglesias and Martin Krallinger. NLP applied to occupational health: MEDDOPROF shared task at IberLEF 2021 on automatic recognition, classification and normalization of professions and occupations from medical texts. In Procesamiento del Lenguaje Natural, 67. 2021. <pre><code>@article{meddoprof, title={NLP applied to occupational health: MEDDOPROF shared task at IberLEF 2021 on automatic recognition, classification and normalization of professions and occupations from medical texts}, author={Lima-López, Salvador and Farré-Maduell, Eulàlia and Miranda-Escalada, Antonio and Brivá-Iglesias, Vicent and Krallinger, Martin}, journal = {Procesamiento del Lenguaje Natural}, volume = {67}, year={2021}, issn = {1989-7553}, url = {http://journal.sepln.org/sepln/ojs/ojs/index.php/pln/article/view/6393}, pages = {243--256} }</code></pre> <strong>Resources:</strong> - Web - Complete corpus - Training Data - Codes Reference List (for MEDDOPROF-NORM) - Annotation Guidelines MEDDOPROF is part of the IberLEF 2021 workshop, which is co-located with the SEPLN 2021 conference. For further information, please visit https://temu.bsc.es/meddoprof/ or email us at encargo-pln-life@bsc.es MEDDOPROF is promoted by the Plan de Impulso de las Tecnologías del Lenguaje de la Agenda Digital (Plan TL).
DOI: 10.6084/m9.figshare.15047982
title: Inline Code Comment Smells Dataset

description: Artifacts of the study "Towards a taxonomy of inline code comment smells"
DOI: 10.6084/m9.figshare.15047982.v4
title: Inline Code Comment Smells Dataset

description: Artifacts of the study "Towards a taxonomy of inline code comment smells"
DOI: 10.5281/zenodo.5056043
title: Monitoring open access publishing of NWO funded research (data)

description: This is the dataset underlying the report "Monitoring open access publishing of NWO funded research" (https://doi.org/10.5281/zenodo.5055609). The report presents statistics on the extent to which publications from the period 2015–2020 funded by NWO are available in Open Access . The analyses presented in this report also cover publications funded by the Netherlands Organisation for Health Research and Development ZonMw. This report builds on an earlier report published in 2020 covering publications from the period 2015–2018.
DOI: 10.5281/zenodo.5056042
title: Monitoring open access publishing of NWO funded research (data)

description: This is the dataset underlying the report "Monitoring open access publishing of NWO funded research" (https://doi.org/10.5281/zenodo.5055609). The report presents statistics on the extent to which publications from the period 2015–2020 funded by NWO are available in Open Access . The analyses presented in this report also cover publications funded by the Netherlands Organisation for Health Research and Development ZonMw. This report builds on an earlier report published in 2020 covering publications from the period 2015–2018.
DOI: 10.5281/zenodo.5461104
title: Preparation of orthodontic arch wire by laser welding of Ti/TiNi dissimilar alloys

description: TiNi shape memory alloy has good biocompatibility and superelasticity on the basis of certain strength and stiffness. In<br> the process of tooth correction, stainless steel of composite orthodontic arch wire is used as the support of supporting<br> teeth. TiNi alloy of composite orthodontic arch wire is used to correct the dislocation teeth. Compared with the traditional<br> stainless steel arch wire, composite orthodontic arch wire can reduce the pain of patients. In this experiment, laser welding<br> was carried out by filling Cu filler metal. Laser centering welding and laser offsetting welding were used respectively, and<br> the joint strength was compared. It was found that laser offsetting welding can effectively reduce the content of interface<br> intermetallic compounds and improve the joint strength.
DOI: 10.5281/zenodo.5461103
title: Preparation of orthodontic arch wire by laser welding of Ti/TiNi dissimilar alloys

description: TiNi shape memory alloy has good biocompatibility and superelasticity on the basis of certain strength and stiffness. In<br> the process of tooth correction, stainless steel of composite orthodontic arch wire is used as the support of supporting<br> teeth. TiNi alloy of composite orthodontic arch wire is used to correct the dislocation teeth. Compared with the traditional<br> stainless steel arch wire, composite orthodontic arch wire can reduce the pain of patients. In this experiment, laser welding<br> was carried out by filling Cu filler metal. Laser centering welding and laser offsetting welding were used respectively, and<br> the joint strength was compared. It was found that laser offsetting welding can effectively reduce the content of interface<br> intermetallic compounds and improve the joint strength.
DOI: 10.5281/zenodo.5396516
title: Bioclimatic classifications for Colombia

description: <pre>Bioclimatic classifications seek to divide a study region into geographic areas with similar bioclimatic characteristics. In this study we proposed two bioclimatic classifications for Colombia using machine learning techniques. We initially obtained a modified Lang classification using dimensionality reduction and classification techniques. We then integrated the modified Lang and Caldas classifications to derive a second bioclimatic classification for Colombia.</pre>
DOI: 10.5281/zenodo.5396515
title: Bioclimatic classifications for Colombia

description: <pre>Bioclimatic classifications seek to divide a study region into geographic areas with similar bioclimatic characteristics. In this study we proposed two bioclimatic classifications for Colombia using machine learning techniques. We initially obtained a modified Lang classification using dimensionality reduction and classification techniques. We then integrated the modified Lang and Caldas classifications to derive a second bioclimatic classification for Colombia.</pre>
DOI: 10.5281/zenodo.5391155
title: Image flow cytometry data of T-cells from healthy and Sezary patients

description: The purpose of our experiments was to investigate the morphology of T-cells using a custom build image flow cytometry device. Blood (T-cells) from healthy donors and Sezary patients was imaged.
DOI: 10.14457/cu.the.2019.94
title: การสร้างสรรค์นาฏยศิลป์เกี่ยวกับเวทมนตร์ในวรรณกรรมไทย

description: วิทยานิพนธ์เรื่อง การสร้างสรรค์นาฏยศิลป์เกี่ยวกับเวทมนตร์ในวรรณกรรมไทย มีวัตถุประสงค์เพื่อหารูปแบบในการสร้างสรรค์ผลงานนาฏยศิลป์ภายใต้หัวข้อ การสร้างสรรค์งานนาฏศิลป์เกี่ยวกับเวทมนตร์ในวรรณกรรมไทย และเพื่อหาแนวคิดหลังการสร้างสรรค์งานนาฏยศิลป์เกี่ยวกับเวทมนตร์ในวรรณคดีไทย โดยมีวิธีดำเนินการวิจัยที่สำคัญ ได้แก่ การศึกษาข้อมูลเชิงเอกสาร การสัมภาษณ์ การศึกษาข้อมูลจากสื่อสารสนเทศ การสังเกตการณ์แบบมีส่วนร่วม และการใช้ประสบการณ์ส่วนตัวของผู้วิจัย โดยรวบรวมข้อมูลและนำมาศึกษาเพื่อทำการวิเคราะห์ สังเคราะห์ ข้อมูล สร้างผลงานนาฏยศิลป์ และทำการสรุปผล ผลการวิจัยพบว่า ในการสร้างสรรค์นาฏยศิลป์เกี่ยวกับเวทมนตร์ในวรรณกรรมไทย เป็นการวิเคราะห์ข้อมูลร่วมกับองค์ประกอบการแสดง 8 องค์ประกอบ ที่อยู่บนพื้นฐานของการศึกษา เรื่องเวทมนตร์ในวรรณกรรม เพื่อใช้กำหนดการแสดงองก์ต่าง ๆ ประกอบด้วย องก์ที่ 1 การใช้เวทมนตร์เพียงอย่างเดียว ได้แก่ เวทมนตร์แปลงกาย องก์ที่ 2 การใช้เวทมนตร์ควบคู่กับเครื่องรางของขลัง ได้แก่ การใช้เวทมนตร์กับผ้ายันต์ องก์ที่ 3 การใช้เวทมนตร์ควบคู่กับวัตถุสามัญ ได้แก่ การใช้เวทมนตร์กับใบไม้ องก์ที่ 4 การใช้เวทมนตร์ควบคู่กับวิญญาณ ได้แก่ การเรียกผี การปลุกผี การครอบงำวิญญาณให้เป็นบริวาร ใช้วิญญาณเป็นพาหนะและใช้วิญญาณเป็นม่านบังตา ภาพสุดท้าย คือ ความหายนะของการครอบครองเวทมนตร์มากเกินไป พร้อมทั้งทำการวิเคราะห์แนวคิดการสร้างสรรค์นาฏยศิลป์เกี่ยวกับเวทมนตร์ในวรรณกรรมไทย ได้แก่ การอนุรักษ์เนื้อหาและใจความสำคัญของวรรณกรรมไทยไว้ในรูปแบบการแสดงนาฏยศิลป์ ความเชื่อด้านเวทมนตร์ในวรรณกรรมไทย ความสัมพันธ์ระหว่างเวทมนตร์กับพระพุทธศาสนา หลักการสัมพันธภาพ (Relationship) กับการออกแบบงานนาฏยศิลป์ ทฤษฎีสัญวิทยากับการออกแบบงานนาฏยศิลป์ รูปแบบผลงานการสร้างนาฏยศิลป์ตามเทคนิคและแนวคิดของศิลปินในยุคสมัยใหม่ (Modern dance) การใช้เวทมนตร์ในเชิงจิตวิทยา และการวิเคราะห์ผลงานสร้างสรรค์ตามเกณฑ์มาตรฐานการยกย่องศิลปินทางด้านนาฏยศิลป์ นอกจากนี้ยังวิเคราะห์องค์ประกอบการแสดงนาฏยศิลป์ทั้ง 8 องค์ประกอบในการสร้างสรรค์ผลงาน งานวิทยานิพนธ์เรื่องนี้มีคุณค่าต่อสังคมในการให้แนวคิดและปรัชญาแก่ประชาชน เพื่อเป็นประโยชน์ในด้านของการให้ปรัชญาในเรื่องการใช้วิธีพิเศษเพื่ออำนวยมาซึ่งสิ่งต่าง ๆ แต่ถ้าหากใช้อย่างไม่เหมาะสมจะทำให้จบลงด้วยความเสียหาย นอกจากนี้วิทยานิพนธ์ฉบับนี้ยังเป็นการศึกษาเรื่องเวทมนตร์ในเชิงวรรณกรรมและความเชื่อเรื่องเวทมนตร์ของสังคมที่นำมาผนวกกับงานสร้างสรรค์ศิลปกรรมศาสตร์อย่างลงตัว
DOI: 10.5281/zenodo.5391154
title: Image flow cytometry data of T-cells from healthy and Sezary patients

description: The purpose of our experiments was to investigate the morphology of T-cells using a custom build image flow cytometry device. Blood (T-cells) from healthy donors and Sezary patients was imaged.
DOI: 10.15468/qk2hd6
title: First report of Cleruchoides Lin & Huber (Hymenoptera: Mymaridae) from the Oriental region with description of a new species from India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Sankararaman, H., Palanivel, S., Manickavasagam, S., Rameshkumar, A. (2021): First report of Cleruchoides Lin & Huber (Hymenoptera: Mymaridae) from the Oriental region with description of a new species from India. Journal of Natural History 55 (17 - 18): 1161-1167, DOI: 10.1080/00222933.2021.1936681, URL: http://dx.doi.org/10.1080/00222933.2021.1936681
DOI: 10.5281/zenodo.5444552
title: Water Uptake as a Crucial Factor on Properties of Cryogels of Gelatine Linked by Dextran Dialdehyde

description: supplementary information
description: cryogels gelatin
DOI: 10.5281/zenodo.5444551
title: Water Uptake as a Crucial Factor on Properties of Cryogels of Gelatine Linked by Dextran Dialdehyde

description: supplementary information
description: cryogels gelatin
DOI: 10.6084/m9.figshare.16571121
title: L8_2.fq.gz

description: RNA seq of the ovarian tissue of Shal sheep
DOI: 10.6084/m9.figshare.16571121.v1
title: L8_2.fq.gz

description: RNA seq of the ovarian tissue of Shal sheep
DOI: 10.6084/m9.figshare.16573070
title: A draft genome assembly of Cicer reticulatum accession PI489777 V2.0

description: PI489777 v2.0 genome<br>
DOI: 10.6084/m9.figshare.16573070.v2
title: A draft genome assembly of Cicer reticulatum accession PI489777 V2.0

description: PI489777 v2.0 genome<br>
DOI: 10.6084/m9.figshare.16573070.v1
title: A draft genome assembly of Cicer reticulatum accession PI489777 V2.0

description: PI489777 v2.0 genome<br>
DOI: 10.6084/m9.figshare.16573286
title: Supplementary Material for: Disparate Information Provided by Pulse Wave Velocity versus Other Measures of Aortic Compliance in End-Stage Renal Disease

description: <b><i>Introduction:</i></b> Unfavorable changes in cardiac and arterial function are related to poor prognosis in chronic kidney disease (CKD). We compared hemodynamic profiles between subjects with end-stage renal disease and 2 control groups with corresponding pulse wave velocities (PWVs). <b><i>Methods:</i></b> Noninvasive hemodynamics were recorded during passive head-up tilt in CKD stage 5 patients (<i>n</i> = 35), patients with primary hypertension (<i>n</i> = 35, <i>n</i> = 30 with antihypertensive medications), and subjects without cardiovascular or renal diseases and cardiovascular medications (<i>n</i> = 70). The groups were selected to have corresponding age, sex, body mass index, and PWV. Hemodynamic data were captured using whole-body impedance cardiography and radial tonometric pulse wave analysis. <b><i>Results:</i></b> Supine blood pressure did not differ between the groups, but upright diastolic blood pressure was lower in CKD patients than in the 2 control groups (<i>p</i> ≤ 0.001 for both, RANOVA). Despite similar PWV, supine aortic pulse pressure was higher in CKD patients versus nonmedicated subjects (<i>p</i> = 0.029). Two additional measures indicated reduced aortic compliance in CKD patients versus both control groups: lower ratio of stroke index to aortic pulse pressure (<i>p</i> ≤ 0.023) and higher aortic characteristic impedance (<i>p</i> ≤ 0.003). The subendocardial viability ratio was lower in the CKD group than in both control groups (<i>p</i> ≤ 0.039). <b><i>Conclusion:</i></b> In the absence of differences in PWV, higher aortic pulse pressure and characteristic impedance, and lower ratio of stroke index to aortic pulse pressure, suggest reduced aortic compliance and impaired left ventricular function in CKD patients. A lower subendocardial viability ratio predisposes the CKD patients to impaired cardiac oxygen supply versus hypertensive patients and nonmedicated controls.
DOI: 10.6084/m9.figshare.16573286.v1
title: Supplementary Material for: Disparate Information Provided by Pulse Wave Velocity versus Other Measures of Aortic Compliance in End-Stage Renal Disease

description: <b><i>Introduction:</i></b> Unfavorable changes in cardiac and arterial function are related to poor prognosis in chronic kidney disease (CKD). We compared hemodynamic profiles between subjects with end-stage renal disease and 2 control groups with corresponding pulse wave velocities (PWVs). <b><i>Methods:</i></b> Noninvasive hemodynamics were recorded during passive head-up tilt in CKD stage 5 patients (<i>n</i> = 35), patients with primary hypertension (<i>n</i> = 35, <i>n</i> = 30 with antihypertensive medications), and subjects without cardiovascular or renal diseases and cardiovascular medications (<i>n</i> = 70). The groups were selected to have corresponding age, sex, body mass index, and PWV. Hemodynamic data were captured using whole-body impedance cardiography and radial tonometric pulse wave analysis. <b><i>Results:</i></b> Supine blood pressure did not differ between the groups, but upright diastolic blood pressure was lower in CKD patients than in the 2 control groups (<i>p</i> ≤ 0.001 for both, RANOVA). Despite similar PWV, supine aortic pulse pressure was higher in CKD patients versus nonmedicated subjects (<i>p</i> = 0.029). Two additional measures indicated reduced aortic compliance in CKD patients versus both control groups: lower ratio of stroke index to aortic pulse pressure (<i>p</i> ≤ 0.023) and higher aortic characteristic impedance (<i>p</i> ≤ 0.003). The subendocardial viability ratio was lower in the CKD group than in both control groups (<i>p</i> ≤ 0.039). <b><i>Conclusion:</i></b> In the absence of differences in PWV, higher aortic pulse pressure and characteristic impedance, and lower ratio of stroke index to aortic pulse pressure, suggest reduced aortic compliance and impaired left ventricular function in CKD patients. A lower subendocardial viability ratio predisposes the CKD patients to impaired cardiac oxygen supply versus hypertensive patients and nonmedicated controls.
DOI: 10.6084/m9.figshare.16573370
title: Supplementary Material for: Phase II Trial of the Combination of Temsirolimus and Sorafenib in Advanced Hepatocellular Carcinoma with Tumor Mutation Profiling

description: <b><i>Background:</i></b> The mammalian target of rapamycin (<i>mTOR</i>) pathway is upregulated in nearly half of hepatocellular carcinoma (HCC) tumors and is associated with poor prognosis. In preclinical models of HCC, the combination of <i>mTOR</i> pathway inhibition with the multikinase inhibitor sorafenib improves treatment efficacy. A prior phase I study of the allosteric mTOR inhibitor temsirolimus combined with sorafenib demonstrated acceptable safety at the recommended phase II dose. <b><i>Methods:</i></b> We conducted a single-arm, multicenter phase II trial of the combination of temsirolimus 10 mg intravenously weekly plus sorafenib 200 mg b.i.d<i>.</i> The primary endpoint was time to progression (TTP) with efficacy target of median TTP of at least 6 months; secondary endpoints included overall survival (OS), objective response rate, safety, and alpha-fetoprotein (AFP) tumor marker response. Next-generation tumor sequencing was performed as an exploratory endpoint. <b><i>Results:</i></b> Twenty-nine patients were enrolled, including 48% with hepatitis C virus infection and 28% with hepatitis B virus; 86% had Barcelona clinic liver cancer stage C disease. Among 28 patients evaluable for efficacy, the median TTP was 3.7 (95% confidence interval [CI]: 2.2, 5.3) months, with 14% of patients achieving TTP of at least 6 months. The median OS was 8.8 (95% CI: 6.8, 14.8) months. There were no complete or partial responses; 75% of patients had stable disease as best response. AFP decline by at least 50% was associated with prolonged TTP and OS. Serious adverse events occurred in 21%; the most common treatment-related adverse events of CTCAE grade 3 or higher were hypophosphatemia (36%), thrombocytopenia (14%), and rash (11%). There were no grade 5 events attributed to sorafenib or temsirolimus. Tumor next-generation sequencing (NGS) was performed in a subgroup of 24 patients with adequate tumor samples. Tumor <i>mTOR</i> pathway mutations were identified in 42%. There was no association between tumor mutation profile and OS or TTP. <b><i>Conclusions:</i></b> The combination of temsirolimus and sorafenib demonstrated acceptable safety but did not achieve the target threshold for efficacy in this phase II study. Tumor NGS including the presence of <i>mTOR</i> pathway mutations was not associated with treatment response in an exploratory subgroup analysis.
DOI: 10.6084/m9.figshare.14703162
title: Binary tree sampling

description: This is bts code with related data in IJGIS
DOI: 10.5281/zenodo.5464675
title: Dataset for "A stacking ensemble algorithm for improving the biases of forest aboveground biomass estimations from multiple remotely sensed datasets"

description: This dataset is associated with a research article entitled "A stacking ensemble algorithm for improving the biases of forest aboveground biomass estimations from multiple remotely sensed datasets".
DOI: 10.5281/zenodo.5464674
title: Dataset for "A stacking ensemble algorithm for improving the biases of forest aboveground biomass estimations from multiple remotely sensed datasets"

description: This dataset is associated with a research article entitled "A stacking ensemble algorithm for improving the biases of forest aboveground biomass estimations from multiple remotely sensed datasets".
DOI: 10.5517/ccdc.csd.cc28k8rw
title: CCDC 2101978: Experimental Crystal Structure Determination

description: Related Article: Arnold L. Rheingold and Phil S. Baran|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28k8sx
title: CCDC 2101979: Experimental Crystal Structure Determination

description: Related Article: Arnold L. Rheingold and Phil S. Baran|2021|CSD Communication|||