cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4293281
title: Maps of interpolated paleotemperatures in Western Europe from MIS 14 to MIS 11

description: To support the ecological model of the study Rodríguez et al. (2020, in review), five BIOCLIM variables (BIO1, BIO6, BIO10, BIO11) were computed from the Oscillayers dataset, for 11 subdivisions of the Marine Isotope Stages MIS 14 to MIS 11, as defined in (Rodríguez et al 2020, in review).<br> Oscillayers is a global‐scale and region‐specific BIOCLIM paleoclimatic datasets with high temporal resolution spanning the Plio‐Pleistocene, facilitating the study of climatic oscillations during the last 5.4 million years at high spatial (2.5 arc‐minutes) and temporal (10 kyr time periods) resolution (Gamisch, 2019).<br> BIOCLIM is a model designed for Species Distribution Modelling (SDM) that defines a set of 19 bioclimatic variables derived from monthly temperature and rainfall values in order to obtain biologically meaningful variables that are commonly used in ecology to model species or biome distributions (Booth et al., 2014; Nix, 1986).<br> The GIS computation was conducted using GRASS GIS map algebra (Shapiro & Westervelt, 1991) scripted via its Python API. The according Python scripts are attached to this dataset.
description: This research was supported by the MICINN project PID2019-105101GB-I00. The funding source was not involved in the study design, nor in the collection, analysis, or interpretation of data, the writing of the report, or in the decision to submit the article for publication. The research of CW was funded by the German Research Foundation (DFG) through the Collaborative Research Centre 806 (DFG project number 57444011).
description: {"references": ["Booth, T.H., Nix, H.A., Busby, J.R., Hutchinson, M.F., 2014. bioclim: the first species distribution modelling package, its early applications and relevance to most current MaxEnt studies. Divers. Distrib. 20, 1\u20139. https://dx.doi.org/10.1111/ddi.12144.", "Gamisch, A., 2019. Oscillayers: A dataset for the study of climatic oscillations over Plio-Pleistocene time-scales at high spatial-temporal resolution. Glob. Ecol. Biogeogr. 28, 1552\u20131156. https://dx.doi.org/10.1111/geb.12979.", "Rodr\u00edguez, J., Willmes, C., Mateos, A. (2020, in review): Shivering in the Pleistocene. Human adaptations to cold exposure in Western Europe from MIS 14 to MIS 11. Journal of Human Evolution.", "Nix, H.A., 1986. A biogeographic analysis of Australian elapid snakes. In: Longmore, R. (Ed.), Atlas of Elapid Snakes. Australian Government Publishing Service, Canberra, pp. 4\u201315.", "Shapiro, M. and Westervelt, J. (1991): r.mapcalc: An Algebra for GIS and Image Processing, U.S. Army Construction Engineering Research Laboratory. https://grass.osgeo.org/grass79/manuals/r.mapcalc.html"]}
DOI: 10.5281/zenodo.4293280
title: Maps of interpolated paleotemperatures in Western Europe from MIS 14 to MIS 11

description: To support the ecological model of the study Rodríguez et al. (2020, in review), five BIOCLIM variables (BIO1, BIO6, BIO10, BIO11) were computed from the Oscillayers dataset, for 11 subdivisions of the Marine Isotope Stages MIS 14 to MIS 11, as defined in (Rodríguez et al 2020, in review).<br> Oscillayers is a global‐scale and region‐specific BIOCLIM paleoclimatic datasets with high temporal resolution spanning the Plio‐Pleistocene, facilitating the study of climatic oscillations during the last 5.4 million years at high spatial (2.5 arc‐minutes) and temporal (10 kyr time periods) resolution (Gamisch, 2019).<br> BIOCLIM is a model designed for Species Distribution Modelling (SDM) that defines a set of 19 bioclimatic variables derived from monthly temperature and rainfall values in order to obtain biologically meaningful variables that are commonly used in ecology to model species or biome distributions (Booth et al., 2014; Nix, 1986).<br> The GIS computation was conducted using GRASS GIS map algebra (Shapiro & Westervelt, 1991) scripted via its Python API. The according Python scripts are attached to this dataset.
description: This research was supported by the MICINN project PID2019-105101GB-I00. The funding source was not involved in the study design, nor in the collection, analysis, or interpretation of data, the writing of the report, or in the decision to submit the article for publication. The research of CW was funded by the German Research Foundation (DFG) through the Collaborative Research Centre 806 (DFG project number 57444011).
description: {"references": ["Booth, T.H., Nix, H.A., Busby, J.R., Hutchinson, M.F., 2014. bioclim: the first species distribution modelling package, its early applications and relevance to most current MaxEnt studies. Divers. Distrib. 20, 1\u20139. https://dx.doi.org/10.1111/ddi.12144.", "Gamisch, A., 2019. Oscillayers: A dataset for the study of climatic oscillations over Plio-Pleistocene time-scales at high spatial-temporal resolution. Glob. Ecol. Biogeogr. 28, 1552\u20131156. https://dx.doi.org/10.1111/geb.12979.", "Rodr\u00edguez, J., Willmes, C., Mateos, A. (2020, in review): Shivering in the Pleistocene. Human adaptations to cold exposure in Western Europe from MIS 14 to MIS 11. Journal of Human Evolution.", "Nix, H.A., 1986. A biogeographic analysis of Australian elapid snakes. In: Longmore, R. (Ed.), Atlas of Elapid Snakes. Australian Government Publishing Service, Canberra, pp. 4\u201315.", "Shapiro, M. and Westervelt, J. (1991): r.mapcalc: An Algebra for GIS and Image Processing, U.S. Army Construction Engineering Research Laboratory. https://grass.osgeo.org/grass79/manuals/r.mapcalc.html"]}
DOI: 10.5281/zenodo.4292953
title: The Spring Festival Effect: the change of NO2 column concentration in China caused by the migration of human activities

description: The Spring Festival is the most important holiday in China, human activity and population mobility may contribute greatly to air quality, especially in the megacities. According to the satellite-based tropospheric nitrogen dioxide (NO<sub>2</sub>) column and ground-based observational concentration of NO<sub>2</sub> in the megacities from 2013 to 2018 around the Spring Festival, we found that NO<sub>2</sub> concentration decreases obviously during the Spring Festival and rebounds after the Spring Festival in China, particularly in the megacities. The tropospheric NO<sub>2</sub> columns density around Beijing-Tianjin-Hebei region decreases about 40% than the period before the festival, and it in Beijing decreases by 41.6% and rebounds by 22.3%. While under the Coronavirus disease 2019 (COVID-19) pandemic progresses, the tropospheric NO<sub>2</sub> columns density in Beijing decreases by 56.2% and rebounds only by 6.8% in 2020.
DOI: 10.5281/zenodo.3630221
title: The Spring Festival Effect: the change of NO2 column concentration in China caused by the migration of human activities

description: The Spring Festival is the most important holiday in China, human activity and population mobility may contribute greatly to air quality, especially in the megacities. According to the satellite-based tropospheric nitrogen dioxide (NO<sub>2</sub>) column and ground-based observational concentration of NO<sub>2</sub> in the megacities from 2013 to 2018 around the Spring Festival, we found that NO<sub>2</sub> concentration decreases obviously during the Spring Festival and rebounds after the Spring Festival in China, particularly in the megacities. The tropospheric NO<sub>2</sub> columns density around Beijing-Tianjin-Hebei region decreases about 40% than the period before the festival, and it in Beijing decreases by 41.6% and rebounds by 22.3%. While under the Coronavirus disease 2019 (COVID-19) pandemic progresses, the tropospheric NO<sub>2</sub> columns density in Beijing decreases by 56.2% and rebounds only by 6.8% in 2020.
DOI: 10.5281/zenodo.4293296
title: A complete dietary review of Japanese birds with special focus on molluscs

description: We present a new database reviewing dietary information for all Japanese bird species. The information within this database was collected through intense literary review to provide a complete look at bird species historically present around the country.
DOI: 10.5281/zenodo.3940553
title: A complete dietary review of Japanese birds with special focus on molluscs

description: We present a new database reviewing dietary information for all Japanese bird species. The information within this database was collected through intense literary review to provide a complete look at bird species historically present around the country.
DOI: 10.21227/sskw-zh51
title: Manipulation Volume inside the Knee Joint Capsule

description: 1
DOI: 10.25345/c5k49k
title: MassIVE MSV000086527 - Dimethyl labeling-based quantitative PTM proteomic analysis of drought-regulated phosphoproteomes in soybean drought-tolerant cultivar
title: The isotopic dimethyl labeling-based quantitative post-translational modification proteomics was applied to study the phosphoproteomic changes associated with the drought responses of two contrasting soybean cultivars. A total of 9,457 non-redundant, unambiguous, label-independent and repeatable phosphopeptides were subsequently identified from six experimental replicates, corresponding to 9,234 of deduced unique phosphoproteins. These soybean proteins contain a total of 20,880 phosphosites, 84.9% of which were found to be novel phosphosites of the soybean phosphoproteome. The overly post-translationally modified proteins is 2.05% of the phosphoproteins identified. Most of these extensively phosphorylated proteins are photoreceptors, mRNA-, histone- and phospholipid-binding as well as serine/threonine/tyrosine protein kinase/phosphatases. The subgroup population distribution of phosphoproteins over the number of the phosphosite of phosphoprotein follows the exponential decay law, Y=4.13e^(-0.098X)-0.04. From 218 significantly regulated unique phosphopeptide groups, 188 significantly regulated phosphoproteins were found, and they are enriched in biological functions of water transport and deprivation, methionine metabolic process, photosynthesis/light reaction, and response to cadmium ion, osmotic stress and ABA under drought treatment. A total of 15 and 20 drought-tolerant cultivar significantly regulated phosphoproteins are transcription factors and protein kinases/phosphatases, respectively. More than 50% of these phosphoproteins are considered to be novel regulatory components, presumably mediating the development of the soybean drought tolerance under water deprivation process. The association of five randomly selected phosphoproteins with the drought response was corroborated with the qRT-PCR method.
DOI: 10.21227/kh1a-cx11
title: Manipulation Volume inside the Knee Joint Capsule

description: 1
DOI: 10.21227/d1en-1617
title: Manipulation Volume inside the Knee Joint Capsule

description: Coming soon.
DOI: 10.6084/m9.figshare.13295687
title: Supplementary Material for: Trends in Clinical Trials for Spinal Cord Stimulation

description: <b><i>Background:</i></b> Spinal cord stimulation (SCS) is a neuromodulation technology widely used in the treatment of intractable chronic pain syndromes. SCS is now being applied more broadly as a possible therapy for a range of indications, including neurological, cardiac, and gastrointestinal disorders. Ongoing research in this field is critical in order to gain further insights into the mechanisms of SCS, determine its role in new indications, and refine programming techniques for the optimization of therapeutic outcomes. <b><i>Objective:</i></b> To assess the state of SCS-related human research by cataloging and summarizing clinical trials that have been recently completed or are currently underway in this field. <b><i>Methods:</i></b> A search was conducted for clinical trials pertaining to SCS using the ClinicalTrials.gov database. Trials were analyzed to generate a detailed overview of ongoing SCS-related research. Specifically, trials were categorized by intervention, trial start date, study completion status, clinical phase, projected subject enrollment, condition, country of origin, device manufacturer, funding source, and study topic. <b><i>Results:</i></b> In total, 212 relevant clinical trials were identified. 175 trials (82.5%) involved invasive SCS, while the remaining 37 trials (17.5%) used noninvasive forms of spinal stimulation. Most trials examined the efficacy of SCS for chronic pain syndromes or new indications, while others assessed different stimulation parameters. The studies spanned &gt;27 different disorders, with almost 20% of trials pertaining to conditions other than chronic pain syndromes. The majority of SCS trials were US-based (55.7% of studies), but many countries (e.g., Belgium and UK) are becoming increasingly active. The ratio of investigator-sponsored to industry-sponsored trials was 2:1. Emphasizing the need to optimize therapeutic outcomes of SCS, one-quarter of trials predominantly focused on the assessment of alternative stimulation parameters such as burst or high-frequency stimulation. <b><i>Conclusions:</i></b> A large number of clinical trials of SCS are underway. Improvements in the treatment of pain and novel indications for SCS constitute the majority of studies. This overview of SCS-related clinical trials provides a window into future new indications, novel stimulation techniques, and a heightened understanding of the mechanisms of action.
DOI: 10.6084/m9.figshare.13295687.v1
title: Supplementary Material for: Trends in Clinical Trials for Spinal Cord Stimulation

description: <b><i>Background:</i></b> Spinal cord stimulation (SCS) is a neuromodulation technology widely used in the treatment of intractable chronic pain syndromes. SCS is now being applied more broadly as a possible therapy for a range of indications, including neurological, cardiac, and gastrointestinal disorders. Ongoing research in this field is critical in order to gain further insights into the mechanisms of SCS, determine its role in new indications, and refine programming techniques for the optimization of therapeutic outcomes. <b><i>Objective:</i></b> To assess the state of SCS-related human research by cataloging and summarizing clinical trials that have been recently completed or are currently underway in this field. <b><i>Methods:</i></b> A search was conducted for clinical trials pertaining to SCS using the ClinicalTrials.gov database. Trials were analyzed to generate a detailed overview of ongoing SCS-related research. Specifically, trials were categorized by intervention, trial start date, study completion status, clinical phase, projected subject enrollment, condition, country of origin, device manufacturer, funding source, and study topic. <b><i>Results:</i></b> In total, 212 relevant clinical trials were identified. 175 trials (82.5%) involved invasive SCS, while the remaining 37 trials (17.5%) used noninvasive forms of spinal stimulation. Most trials examined the efficacy of SCS for chronic pain syndromes or new indications, while others assessed different stimulation parameters. The studies spanned &gt;27 different disorders, with almost 20% of trials pertaining to conditions other than chronic pain syndromes. The majority of SCS trials were US-based (55.7% of studies), but many countries (e.g., Belgium and UK) are becoming increasingly active. The ratio of investigator-sponsored to industry-sponsored trials was 2:1. Emphasizing the need to optimize therapeutic outcomes of SCS, one-quarter of trials predominantly focused on the assessment of alternative stimulation parameters such as burst or high-frequency stimulation. <b><i>Conclusions:</i></b> A large number of clinical trials of SCS are underway. Improvements in the treatment of pain and novel indications for SCS constitute the majority of studies. This overview of SCS-related clinical trials provides a window into future new indications, novel stimulation techniques, and a heightened understanding of the mechanisms of action.
DOI: 10.25403/upresearchdata.13286552
title: The effects of outcome framing on impact investment choices

description: The purpose of this cross-sectional explanatory study was to examine the relationships between perceived risk, sense of understanding, and outcome framing in the context of impact investment decision-making. To answer the proposed research questions, a single-factor post-test-only experiment was designed. The experiment followed a between-subjects design, where participants are exposed to multiple counterbalanced treatments using a completely randomised design. The experiment was self-administered using a web-based questionnaire which gathered data via an online questionnaire from a broad heterogenous population of individuals capable of making investment decisions.The record contains 4 files that are permanently embargoed:- Informed Consent Statement in pdf format- 2 SPSS data files- Questionnaire in pdf format<br><br>
DOI: 10.25403/upresearchdata.13286552.v1
title: The effects of outcome framing on impact investment choices

description: The purpose of this cross-sectional explanatory study was to examine the relationships between perceived risk, sense of understanding, and outcome framing in the context of impact investment decision-making. To answer the proposed research questions, a single-factor post-test-only experiment was designed. The experiment followed a between-subjects design, where participants are exposed to multiple counterbalanced treatments using a completely randomised design. The experiment was self-administered using a web-based questionnaire which gathered data via an online questionnaire from a broad heterogenous population of individuals capable of making investment decisions.The record contains 4 files that are permanently embargoed:- Informed Consent Statement in pdf format- 2 SPSS data files- Questionnaire in pdf format<br><br>
DOI: 10.6084/m9.figshare.13295696.v1
title: Battery response data from Linear parameter-varying model for a refuellable zinc–air battery

description: Due to the increasing trend of using renewable energy, the development of an energy storage system (ESS) attracts great research interest. A zinc–air battery (ZAB) is a promising ESS due to its high capacity, low cost and high potential to support circular economy principles. However, despite ZABs technological advancements, a generic dynamic model for a ZAB, which is a key component for effective battery management and monitoring, is still lacking. ZABs show nonlinear behaviour where the steady-state gain is strongly dependent on operating conditions. The present study aims to develop a dynamic model, being capable of predicting the nonlinear dynamic behaviour of a refuellable ZAB, using a linear parameter-varying (LPV) technique. The LPV model is constructed from a family of linear time-invariant models, where the discharge current level is used as a scheduling parameter. The developed LPV model is benchmarked against linear and nonlinear model counterparts. Herein, the LPV model performs remarkably well in capturing the nonlinear behaviour of a ZAB. It significantly outperforms the linear model. Overall, the LPV approach provides a systematic way to construct a robust dynamic model which well represents the nonlinear behaviour of a ZAB.
DOI: 10.6084/m9.figshare.13295696
title: Battery response data from Linear parameter-varying model for a refuellable zinc–air battery

description: Due to the increasing trend of using renewable energy, the development of an energy storage system (ESS) attracts great research interest. A zinc–air battery (ZAB) is a promising ESS due to its high capacity, low cost and high potential to support circular economy principles. However, despite ZABs technological advancements, a generic dynamic model for a ZAB, which is a key component for effective battery management and monitoring, is still lacking. ZABs show nonlinear behaviour where the steady-state gain is strongly dependent on operating conditions. The present study aims to develop a dynamic model, being capable of predicting the nonlinear dynamic behaviour of a refuellable ZAB, using a linear parameter-varying (LPV) technique. The LPV model is constructed from a family of linear time-invariant models, where the discharge current level is used as a scheduling parameter. The developed LPV model is benchmarked against linear and nonlinear model counterparts. Herein, the LPV model performs remarkably well in capturing the nonlinear behaviour of a ZAB. It significantly outperforms the linear model. Overall, the LPV approach provides a systematic way to construct a robust dynamic model which well represents the nonlinear behaviour of a ZAB.
DOI: 10.17894/ucph.72e1f580-0107-4e05-bda3-e7f61e8d77b1
title: Biowide consumer links

description: Data on plant-fungus and plant-arthropod interaction links for the 549 plant species found across the 130 BioWide sites in Denmark. Archive 1: Number of associated arthropod species (from the BRC database) and number of associated fungal species (from Danish Fungal Database) observed for 1349 plant taxa (species or genus level), i.e. raw data. Archive 2: Observed arthropod link score and Observed fungal link score per plant species. The calculus of link scores from raw data is detailed in manuscript (doi: https://doi.org/10.1101/2020.04.17.046292) Archive 3: Attributes of the 549 plant species used to model their predicted link score (ectomycorrhizal status, native area, occupancy in Denmark, phylogenetic grouping, lifespan, life form and size, as detailed in manuscript; doi: https://doi.org/10.1101/2020.04.17.046292).
DOI: 10.21227/4wq7-3d78
title: the Sintel 4D Light Field Videos dataset

description: The generated dataset consists of 23 synthetic 4D LFVs with 1,204x436 pixels, 9x9 views, and 20--50 frames, and has ground-truth depth values in the central view, so that can be used for training deep learning-based methods. Each scene was rendered with a ``clean'' pass after modifying the production file of ``Sintel'' with reference to the MPI Sintel dataset ~\cite{butler2012naturalistic}. A ``clean'' pass includes complex illumination and reflectance properties including specular reflections, such as smooth shading and specular reflections, while bokeh, motion blur, and semi-transparent objects are excluded.
DOI: 10.6084/m9.figshare.13292552.v1
title: Viral and MAGs genome sequences

description: Viral and mags sequences generated in Fuxian Lake (20m depth sampling) Hi-C and metagenome project.
DOI: 10.6084/m9.figshare.13292552
title: Viral and MAGs genome sequences

description: Viral and mags sequences generated in Fuxian Lake (20m depth sampling) Hi-C and metagenome project.
DOI: 10.5281/zenodo.4292170
title: GreenAnt Travel data, example dataset

description: This dataset contains data collected by a smartphone application GreenAnt about users movement in restricted geographical areas. The data collected was used to calculate personal and area summary of air quality exposure to NO2, PM2.5 and PM10. In addition calculation of emissions from diesel and petrol cars (nox, pm, voc, co2). Due to over 4.5 mill collected records, this dataset is only an extraction and works as an example. The example dataset has been checked and verified according to privacy issues
DOI: 10.5281/zenodo.4292169
title: GreenAnt Travel data, example dataset

description: This dataset contains data collected by a smartphone application GreenAnt about users movement in restricted geographical areas. The data collected was used to calculate personal and area summary of air quality exposure to NO2, PM2.5 and PM10. In addition calculation of emissions from diesel and petrol cars (nox, pm, voc, co2). Due to over 4.5 mill collected records, this dataset is only an extraction and works as an example. The example dataset has been checked and verified according to privacy issues
DOI: 10.5519/qd.1vv8bkb9
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (115 records)
DOI: 10.6084/m9.figshare.13295717
title: PLSDB 2020_11_19

description: PLSDB files from 2020.11.19<br>
DOI: 10.14459/2020mp1578279
title: Node-Level optimization of a 3D Block-Based Multiresolution Compressible Flow Solver with Emphasis on Performance Portability