cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10939219
title: Unraveling the Impact of Code Smell Agglomerations on Code Stability

description: This replication package contains instructions on how to use our scripts, and all the necessary data to further replicate/expand the work Unraveling the Impact of Code Smell Agglomerations on Code Stability.

Read the README file to replicate or expand our work!
DOI: 10.5281/zenodo.12986609
title: Unraveling the Impact of Code Smell Agglomerations on Code Stability

description: This replication package contains instructions on how to use our scripts, and all the necessary data to further replicate/expand the work Unraveling the Impact of Code Smell Agglomerations on Code Stability.

Read the README file to replicate or expand our work!
DOI: 10.5281/zenodo.15602792
title: Unraveling the Impact of Code Smell Agglomerations on Code Stability

description: This replication package contains instructions on how to use our scripts, and all the necessary data to further replicate/expand the work Unraveling the Impact of Code Smell Agglomerations on Code Stability.

Read the README file to replicate or expand our work!
DOI: 10.15468/dl.vvvdth
title: Occurrence Download

description: A dataset containing 2536 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Citrus sinensis (Mill.) Pers., 1806"
 ]
}

 The dataset includes 2536 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022887-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7nxwyq
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenopharyngodon idella (Valenciennes, 1844)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.0214 -34.0501,25.5395 -34.1098,25.5395 -32.9007,20.509 -32.9007,20.509 -34.5676,20.524 -34.555,20.8859 -34.5419,20.9606 -34.4398,21.2995 -34.5131,21.5296 -34.4338,21.8696 -34.4439,22.0323 -34.2835,22.221 -34.2428,22.2566 -34.1304,22.5993 -34.0741,22.9652 -34.1674,23.4069 -34.1858,23.4955 -34.0792,23.6056 -34.0563,24.8471 -34.2877,24.9447 -34.2397,25.0214 -34.0501))"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022888-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vqbjm4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enteromius afrohamiltoni (Crass, 1960)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.628 -23.023,35.6007 -22.9702,35.6007 -23.165,35.628 -23.023))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023053-250525065834625/datasets/export for details.
DOI: 10.15468/dl.c4appw
title: Occurrence Download

description: A dataset containing 3666 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ozophora Uhler, 1871"
 ]
}

 The dataset includes 3666 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023157-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15553907
title: RAWDATA: Minimalist and Nanoparticle-Free Selenium-Based Photocathodes for Record Performance Solar-Driven Hydrogen Evolution

description: this repository contais the raw data used in the paper:

Minimalist and Nanoparticle-Free Selenium-Based Photocathodes for Record Performance Solar-Driven Hydrogen Evolution
DOI: 10.5281/zenodo.15553906
title: RAWDATA: Minimalist and Nanoparticle-Free Selenium-Based Photocathodes for Record Performance Solar-Driven Hydrogen Evolution

description: this repository contais the raw data used in the paper:

Minimalist and Nanoparticle-Free Selenium-Based Photocathodes for Record Performance Solar-Driven Hydrogen Evolution
DOI: 10.15468/dl.sye3t8
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Guzmania remyi L.B.Sm."
 ]
}

 The dataset includes 158 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023158-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13790362
title: NPstereo

description: Repository for the data used to train the NPstereo model.
DOI: 10.5281/zenodo.16965596
title: NPstereo

description: Repository for the data used to train the NPstereo model.
DOI: 10.15468/dl.jg9xmc
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "OccurrenceStatus is Present",
 "TaxonKey is Pteroplatytrygon violacea"
 ]
}

 The dataset includes 37 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001392-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6xduxu
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Bothrops punctatus"
 ]
}

 The dataset includes 162 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001391-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mxkrvg
title: Occurrence Download

description: A dataset containing 626 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "OccurrenceStatus is Present",
 "TaxonKey is Sphyrna lewini"
 ]
}

 The dataset includes 626 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001394-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gu4cbb
title: Occurrence Download

description: A dataset containing 125874 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Columbina squammata"
 ]
}

 The dataset includes 125874 records from 246 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001330-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ms5uxu
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Metapenaeus monoceros",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-6.6 29.26705, -6.6 50.94, 40.81373 50.94, 40.81373 29.26705, -6.6 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 18 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001395-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.53emab
title: Occurrence Download

description: A dataset containing 1916 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alcea rosea",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1916 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001396-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vxn3wj
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Elevation 34.0-90.0m",
 "Geometry POLYGON((-73.95092 7.54413,-74.0012 7.37379,-73.99282 7.29899,-73.99282 7.18261,-73.97606 7.0953,-73.89645 7.02045,-73.80428 7.03709,-73.82577 7.24135,-73.80901 7.3868,-73.78387 7.51144,-73.82158 7.58621,-73.95092 7.54413))",
 "TaxonKey is one of (Orchidaceae, Bromeliaceae)"
 ]
}

 The dataset includes 45 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001397-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12890141
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.3f7tm7
title: Occurrence Download

description: A dataset containing 26158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Molossidae, Vespertilionidae, Mormoopidae, Noctilionidae, Emballonuridae)"
 ]
}

 The dataset includes 26158 records from 390 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001399-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kbqfqj
title: Occurrence Download

description: A dataset containing 421 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lagocephalus sceleratus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-6.6 29.26705, -6.6 50.94, 40.81373 50.94, 40.81373 29.26705, -6.6 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 421 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001404-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.465vds
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Quercus convallata",
 "Year 2000-2025"
 ]
}

 The dataset includes 97 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001402-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ddkkdk
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Bothrocophias myersi"
 ]
}

 The dataset includes 32 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001401-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ffbgd
title: Occurrence Download

description: A dataset containing 585 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (South America, North America)",
 "OccurrenceStatus is Present",
 "TaxonKey is Sphyrna mokarran"
 ]
}

 The dataset includes 585 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001403-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4h8fcn
title: Occurrence Download

description: A dataset containing 519 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Ligusticum porteri"
 ]
}

 The dataset includes 519 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001406-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ja5x6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tilia americana",
 "Country is Armenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001407-250827131500795/datasets/export for details.
DOI: 10.26093/cds/vizier.75429126
title: Spectra of brown dwarf candidates in the ONC

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' JWST spectra of brown dwarf candidates in the Orion Nebula Cluster.' (bibcode: 2025MNRAS.542L.126L)
DOI: 10.15468/dl.jrbmxf
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tilia americana",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 27 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001409-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48511/6ihlsi04
title: Bonanza Creek

description: Water monitoring at Bonanza Creek conducted by the Slocan Lake Stewardship Society
DOI: 10.5281/zenodo.15536524
title: Resources and data on the recombination landscape of the harlequin fly and its Cla-element

description: This dataset contains phased files of Chironomus riparius from MELT, iSMC, PLINK and bedtools, such as supporting files. 

For further details also check the GitHub page: https://github.com/lpettrich/Crip_RecombinationLandscape_HB_2025



Populations:



Hesse in Germany =  MG

Rhône-Alpes in France = MF

Lorraine in France = NMF

Piemont in Italy = SI

Andalusia in Spain = SS



MELT: MELT ouput with added info on population and numbered insertions reflecting all 441 detected Cla insertions.

iSMC: Recombination rate rho in 1 kb windows, 10 kb windows and 100 kb windows along the genome. 

bedtools closest ismc 1 kb Cla: Bedtools closest analysis of the distance of the next Cla-element to the recombination rate rho in 1 kb windows.

bedtools closest ismc 10 kb Cla: Bedtools closest analysis of the distance of the next Cla-element to the recombination rate rho in 10 kb windows.

bedtools closest ismc 100 kb Cla: Bedtools closest analysis of the distance of the next Cla-element to the recombination rate rho in 100 kb windows.

bedtools closest ismc 1 kb HB: Bedtools closest analysis of the distance of the next haplotype block to the recombination rate rho in 1 kb windows.

plink_HB_allpop: Haplotype Block detection

input-files figures: Supporting files needed to create figures. As well as tables with full statistics.
DOI: 10.5281/zenodo.16970792
title: Resources and data on the recombination landscape of the harlequin fly and its Cla-element

description: This dataset contains phased files of Chironomus riparius from MELT, iSMC, PLINK and bedtools, such as supporting files. 

For further details also check the GitHub page: https://github.com/lpettrich/Crip_RecombinationLandscape_HB_2025



Populations:



Hesse in Germany =  MG

Rhône-Alpes in France = MF

Lorraine in France = NMF

Piemont in Italy = SI

Andalusia in Spain = SS



MELT: MELT ouput with added info on population and numbered insertions reflecting all 441 detected Cla insertions.

iSMC: Recombination rate rho in 1 kb windows, 10 kb windows and 100 kb windows along the genome. 

bedtools closest ismc 1 kb Cla: Bedtools closest analysis of the distance of the next Cla-element to the recombination rate rho in 1 kb windows.

bedtools closest ismc 10 kb Cla: Bedtools closest analysis of the distance of the next Cla-element to the recombination rate rho in 10 kb windows.

bedtools closest ismc 100 kb Cla: Bedtools closest analysis of the distance of the next Cla-element to the recombination rate rho in 100 kb windows.

bedtools closest ismc 1 kb HB: Bedtools closest analysis of the distance of the next haplotype block to the recombination rate rho in 1 kb windows.

plink_HB_allpop: Haplotype Block detection

input-files figures: Supporting files needed to create figures. As well as tables with full statistics.
DOI: 10.15468/dl.g2w7nw
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tilia americana",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001408-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aswvnk
title: Occurrence Download

description: A dataset containing 145521 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cotoneaster franchetii, Cotoneaster glaucophyllus, Cotoneaster horizontalis, Cotoneaster integrifolius, Cotoneaster lacteus, Cotoneaster lucidus, Cotoneaster microphyllus, Cotoneaster multiflorus, Cotoneaster ovatus, Cotoneaster pannosus, Cotoneaster salicifolius, Cotoneaster simonsii, Cotula australis, Cotula coronopifolia, Cotyledon orbiculata, Crassocephalum crepidioides, Crassocephalum rubens, Crassula helmsii, Crassula multicava, Crassula sarmentosa)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1990"
 ]
}

 The dataset includes 145521 records from 648 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001383-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/h79hz-vcx43
title: AimB depletion control w/ xylose

description: Raw data files of AimB depletion control w/ xylose
description: <strong>Tilt Series Date:</strong> 2009-09-21</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -16.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach, IMOD</p>
<strong>Collaborators and Roles:</strong> The AimB_depletion strain was constructed by John Werner, data collected by ZL</p>
<strong>Purification / Growth Conditions / Treatment:</strong> AimB depletion is achieved by serial exchanging media from that including 0.02% xylose to that including 0.3% glucose.</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/1 or R2/2, 10nm gold, 100% humidity</p>
  zla2009-09-21-27_slicer10191.jpg: Caulobacter crescentus .  vesicle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-09-21-27/rawdata/</p>09sep21a_AimBxyl_045.mrc,  Tilt Series (Pixel Size 1.192 nm), 536.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-09-21-27/rawdata/09sep21a_AimBxyl_045.mrc"
        > <i class="download icon"></i> Download </a></p>

        09sep21a_AimBxyl_045_full.rec,  Reconstruction (Pixel Size 2.384 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-09-21-27/3dimage_10368/09sep21a_AimBxyl_045_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/1kjx1-cze09
title: O. tauri MG132 arrest

description: Ostreococcus tauri cryosections
description: <strong>Tilt Series Date:</strong> 2009-07-23</p>
<strong>Data Taken By:</strong> Lu Gan</p>
<strong>Species / Specimen:</strong> Ostreococcus tauri</p>
<strong>Strain:</strong> RCC745</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> prepared by Lu Gan at Caltech; high-pressure frozen and cryosectioned by Mark Ladinsky; data collected by Lu Gan; processed by Lu Gan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 9h in 1mM Hydroxyurea, 12h in 50uM Propyzamide, 70m in 50uM MG132</p>
<strong>Sample Preparation:</strong> Cryoprotectant: 10mg/ml BSA, 2X 10nm gold, 20% Dextran; Cells mixed w/ cryoprotectant shortly before HPF </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-07-23-52/3dimage_11531/</p>RCC745_MGtovis_186.rec,  Reconstruction (Pixel Size 1.26 nm), 201.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-07-23-52/3dimage_11531/RCC745_MGtovis_186.rec"
        > <i class="download icon"></i> Download </a></p>

        RCC745_MGtovis_186.mrc,  Tilt Series (Pixel Size 1.26 nm), 536.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-07-23-52/rawdata/RCC745_MGtovis_186.mrc"
        > <i class="download icon"></i> Download </a></p>