cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6843090
title: Data and model for detecting spam activity on academic articles

description: With the remarkable capability to reach the public instantly, social media has become integral in sharing scholarly articles to measure public response. This paper analyzes how Twitter bots interact with scholarly articles on the platform. Spamming by bots on social media can steer the conversation and present a false public interest in given research, affecting policies impacting the public's lives in the real world. In this paper, we determined whether bots are disseminating a given scholarly article based on analyzing the relationship between Twitter bots and several research factors. We developed and tested several supervised machine-learning classification models to tackle this problem. Through our analysis, we also identified that scholarly articles in health and human science are more prone to bot activity than other research areas.
DOI: 10.5281/zenodo.7823557
title: Data and model for detecting spam activity on academic articles

description: With the remarkable capability to reach the public instantly, social media has become integral in sharing scholarly articles to measure public response. This paper analyzes how Twitter bots interact with scholarly articles on the platform. Spamming by bots on social media can steer the conversation and present a false public interest in given research, affecting policies impacting the public's lives in the real world. In this paper, we determined whether bots are disseminating a given scholarly article based on analyzing the relationship between Twitter bots and several research factors. We developed and tested several supervised machine-learning classification models to tackle this problem. Through our analysis, we also identified that scholarly articles in health and human science are more prone to bot activity than other research areas.
DOI: 10.5281/zenodo.7823566
title: Data and model for detecting spam activity on academic articles

description: With the remarkable capability to reach the public instantly, social media has become integral in sharing scholarly articles to measure public response. This paper analyzes how Twitter bots interact with scholarly articles on the platform. Spamming by bots on social media can steer the conversation and present a false public interest in given research, affecting policies impacting the public's lives in the real world. In this paper, we determined whether bots are disseminating a given scholarly article based on analyzing the relationship between Twitter bots and several research factors. We developed and tested several supervised machine-learning classification models to tackle this problem. Through our analysis, we also identified that scholarly articles in health and human science are more prone to bot activity than other research areas.
DOI: 10.5281/zenodo.13347361
title: Streptococcus pyogenes pharyngitis elicits diverse antibody responses to key vaccine antigens influenced by the imprint of past infections.
title: Antibody responses to S. pyogenes human challenge.

description: Here you will find the raw data (RawData.RData) and code (CHIVAS_SEROLOGY_Code.Rmd, an R Markdown file) for generating the analysis and figures for the following publication:

Streptococcus pyogenes pharyngitis elicits diverse antibody responses to key vaccine antigens influenced by the imprint of past infections.

Joshua Osowicki1,2,3 #, Hannah R Frost1 #, Kristy I Azzopardi1, Alana L Whitcombe4, Reuben McGregor4, Lauren H. Carlton4, Ciara Baker1, Loraine Fabri1,5,6, Manisha Pandey7, Michael F Good7, Jonathan R. Carapetis8,9,10, Mark J Walker11,12,13, Pierre R Smeesters1,2,5,6, Paul V Licciardi2,14, Nicole J Moreland4 *, Danika L Hill15 *, Andrew C Steer1,2,3 *

Provided in the RData file are the following items: 

Dataframes: 

"outcome" : clinical variables associated with human challenge for each participant

"data" : ELISA and functional antibody responses for human challenge participants. Each timepoint and isotype for each antigen as seperate column)

"data_long": Data equivalent to "data" file but in long format, i.e. One column for each antigen, timepoint and isotype as factors. 

"data.melt" :  Data equivalent to "data" file but in longer format , i.e. timepoint, isotype and antigen as factors, 'value' as ELISA AU. 

"luminex" : IgG responses to 6 antigens analysed by luminex bead-based assay in human challenge participants.

"luminex.children" : IgG responses to 6 antigen analysed by luminex bead-based assay in children

Vectors:

"pharyngitis" : participant "id" for the 19 individuals that developed pharyngitis. 

"Antigen.Order" : relates to "Main" antigen classification used in Figure 2

'additional" : relates to "Additional  

Function: 

"custom_theme" : used as a theme when using ggplot to graph. 

Adobe Illustrator or Inkscape were used to generate the final image files for publication, with some graph editing to axes labels, font size, adding p-values etc. 

 

Additional files: 

 3 .csv files have been included for download

"ELISA_data_wide_format.csv", a wide format data table of 25 human challenge individuals and 219 variables. Equivalent to the 'data' dataframe in the RData file

"CHIVAS_luminex.csv", a long format data table of 25 human challenge participants at 1 week, 1 month, and 3 months. Equivalent to the 'luminex' dataframe in the RData file. 

"Luminex.children.csv", a datatable of 6 luminex variables for 39 children (healthy and post pharyngitis). Equivalent to the 'luminex.children' dataframe in the RData file.
DOI: 10.5281/zenodo.13347362
title: Streptococcus pyogenes pharyngitis elicits diverse antibody responses to key vaccine antigens influenced by the imprint of past infections.
title: Antibody responses to S. pyogenes human challenge.

description: Here you will find the raw data (RawData.RData) and code (CHIVAS_SEROLOGY_Code.Rmd, an R Markdown file) for generating the analysis and figures for the following publication:

Streptococcus pyogenes pharyngitis elicits diverse antibody responses to key vaccine antigens influenced by the imprint of past infections.

Joshua Osowicki1,2,3 #, Hannah R Frost1 #, Kristy I Azzopardi1, Alana L Whitcombe4, Reuben McGregor4, Lauren H. Carlton4, Ciara Baker1, Loraine Fabri1,5,6, Manisha Pandey7, Michael F Good7, Jonathan R. Carapetis8,9,10, Mark J Walker11,12,13, Pierre R Smeesters1,2,5,6, Paul V Licciardi2,14, Nicole J Moreland4 *, Danika L Hill15 *, Andrew C Steer1,2,3 *

Provided in the RData file are the following items: 

Dataframes: 

"outcome" : clinical variables associated with human challenge for each participant

"data" : ELISA and functional antibody responses for human challenge participants. Each timepoint and isotype for each antigen as seperate column)

"data_long": Data equivalent to "data" file but in long format, i.e. One column for each antigen, timepoint and isotype as factors. 

"data.melt" :  Data equivalent to "data" file but in longer format , i.e. timepoint, isotype and antigen as factors, 'value' as ELISA AU. 

"luminex" : IgG responses to 6 antigens analysed by luminex bead-based assay in human challenge participants.

"luminex.children" : IgG responses to 6 antigen analysed by luminex bead-based assay in children

Vectors:

"pharyngitis" : participant "id" for the 19 individuals that developed pharyngitis. 

"Antigen.Order" : relates to "Main" antigen classification used in Figure 2

'additional" : relates to "Additional  

Function: 

"custom_theme" : used as a theme when using ggplot to graph. 

Adobe Illustrator or Inkscape were used to generate the final image files for publication, with some graph editing to axes labels, font size, adding p-values etc. 

 

Additional files: 

 3 .csv files have been included for download

"ELISA_data_wide_format.csv", a wide format data table of 25 human challenge individuals and 219 variables. Equivalent to the 'data' dataframe in the RData file

"CHIVAS_luminex.csv", a long format data table of 25 human challenge participants at 1 week, 1 month, and 3 months. Equivalent to the 'luminex' dataframe in the RData file. 

"Luminex.children.csv", a datatable of 6 luminex variables for 39 children (healthy and post pharyngitis). Equivalent to the 'luminex.children' dataframe in the RData file.
DOI: 10.15468/dl.tt9n8w
title: Occurrence Download

description: A dataset containing 35693 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fratercula corniculata (J.F.Naumann, 1821)"
 ]
}

 The dataset includes 35693 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040188-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9542976
title: WallStreetBets 2022
DOI: 10.15468/dl.vehytp
title: Occurrence Download

description: A dataset containing 41759 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Chiroptera",
 "Year 1996-2024"
 ]
}

 The dataset includes 41759 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040191-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6w6vd
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-104.10077 19.50106,-102.62451 19.50106,-102.62451 20.53493,-104.10077 20.53493,-104.10077 19.50106))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Kinosternon hirtipes (Wagler, 1830)",
 "Year 2001-2024"
 ]
}

 The dataset's 3 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040159-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6j573q
title: Occurrence Download

description: A dataset containing 7745 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is North America",
 "Country is one of (United States of America, Canada)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Corvus brachyrhynchos C.L.Brehm, 1822"
 ]
}

 The dataset includes 7745 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040192-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6069/gz3q-fm04
title: Global Burden of Disease Study 2021 (GBD 2021) Smoking Mortality and Prevalence Forecasts 2022-2050

description: The Global Burden of Disease Study 2021 (GBD 2021), coordinated by the Institute for Health Metrics and Evaluation (IHME), estimated the burden of diseases, injuries, and risk factors for 204 countries and territories. This dataset provides annual estimates for deaths and years of life lost (YLLs) for 2022-2050 in three smoking prevalence scenarios. Data sources used to produce the estimates came from GBD 2019 and GBD 2021 analyses.
DOI: 10.15468/dl.x5b4hs
title: Occurrence Download

description: A dataset containing 1409 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Dendrobates auratus (Girard, 1855), Dendrobates truncatus (Cope, 1861))"
 ]
}

 The dataset includes 1409 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040194-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3rpen8
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Atelopus nanay Coloma, 2002"
 ]
}

 The dataset includes 117 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040196-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.psmgar
title: Occurrence Download

description: A dataset containing 526733 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anopheles Meigen, 1818"
 ]
}

 The dataset includes 526733 records from 251 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040189-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ndbv8
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "GadmGid is one of (COL.27.5_1)",
 "TaxonKey is one of (Astroblepus Humboldt, 1805)"
 ]
 }
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0283090-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ptjaa1
title: Occurrence Download

description: A dataset containing 147164 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helmitheros vermivorum (J.F.Gmelin, 1789)"
 ]
}

 The dataset includes 147164 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024703-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dzfq2k
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Schima khasiana var. sericans Hand.-Mazz.",
 "TaxonKey is Schima sericans var. sericans"
 ]
}

 The dataset includes 30 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0297782-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wb2hqg
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maxillaria sigmoidea (C.Schweinf.) Ames & Correll"
 ]
}

 The dataset includes 69 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116741-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yaanz7
title: Occurrence Download

description: A dataset containing 102034 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Urtica urens L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 102034 records from 717 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116734-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5fn3c6
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Flexiseps mandokava (Raxworthy & Nussbaum, 1993)"
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0283072-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yt0nzx
title: Occurrence Download

description: A dataset containing 375 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CardObs : Observations naturalistes issues de l'outil CardObs-Données naturalistes de Laurent Léquivard"
 ]
}

 The dataset includes 375 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024708-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dsxz4y
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maxillaria synsepala J.T.Atwood"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116757-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c7545m
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oreophryne biroi (Méhely, 1897)"
 ]
}

 The dataset includes 67 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0297827-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eidma6
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CardObs : Observations naturalistes issues de l'outil CardObs-Données naturalistes de Monsieur VINCENT Alexis"
 ]
}

 The dataset includes 186 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024754-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mujpt7
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maxillaria suaveolens Barringer"
 ]
}

 The dataset includes 10 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116756-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzv5zt
title: Occurrence Download

description: A dataset containing 1565 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lithobates spectabilis (Hillis & Frost, 1985)"
 ]
}

 The dataset includes 1565 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0307277-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mdpg4h
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Données naturalistes de Marion LAPRUN"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024727-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gusj3u
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aristida divulsa Andersson"
 ]
}

 The dataset includes 46 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116750-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nahkxj
title: Occurrence Download

description: A dataset containing 144413 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Schefflera actinophylla (Endl.) Harms, Syzygium jambos (L.) Alston, Ctenarytaina eucalypti (Maskell, 1890), Gypsophila paniculata L., Yersinia pestis (Lehmann & Neumann, 1896) van Loghem, 1944, Rubus armeniacus Focke, Pinus patula Schiede ex Schltdl. & Cham., Prosopis glandulosa Torr., Prosopis velutina Wooton, Acacia longifolia (Andrews) Willd., Archontophoenix cunninghamiana (H.Wendl.) H.Wendl. & Drude, Callithrix geoffroyi (Humboldt, 1812), Callithrix jacchus (Linnaeus, 1758), Callithrix penicillata (É.Geoffroy Saint-Hilaire, 1812), Daphnia lumholtzi Sars, 1885, Elaeis guineensis Jacq., Fimbristylis dichotoma (L.) Vahl, Hemidactylus mabouia (Moreau De Jonnès, 1818), Lespedeza cuneata, Morus alba L., Paederia foetida L., Phakopsora euvitis Y.Ono, Phyllanthus urinaria L., Prosopis juliflora (Sw.) DC.)"
 ]
}

 The dataset includes 144413 records from 1195 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048450-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/463-ycq-36n
title: Yezognophos vittaria (Thunberg, 1788)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/n71-14l-mcc
title: Yezognophos vittaria (Thunberg, 1788)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/bsp-27q-5g3
title: Odontopera bidentata (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/ldv-5ra-g13
title: Selenia lunularia (Hübner, [1788])

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/pk4-jhe-49k
title: Odontopera bidentata (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/j7s-1d1-0kw
title: Siona lineata (Scopoli, 1763)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/k2f-n6m-25p
title: Yezognophos vittaria (Thunberg, 1788)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/83a-c80-acg
title: Yezognophos vittaria (Thunberg, 1788)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/nmw-8aw-pja
title: Odontopera bidentata (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/ep6-pj0-7wk
title: Yezognophos vittaria (Thunberg, 1788)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/m79-0kx-fag
title: Yezognophos vittaria (Thunberg, 1788)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/jjw-j9g-ndd
title: Siona lineata (Scopoli, 1763)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/ywy-zgg-2mr
title: Siona lineata (Scopoli, 1763)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/3rj-zk0-b6z
title: Yezognophos vittaria (Thunberg, 1788)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.