cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21739331.v1
title: DNA signaturing database for Scenedesmus-like microalgae

description: This file is a DNA signaturing database for Scenedesmus-like microalgae species identification.
DOI: 10.6084/m9.figshare.26090395.v1
title: content analysis

description: content analysis
DOI: 10.6084/m9.figshare.26954833.v1
title: Risk factors for persistent pain after arthroscopic rotator cuff repair

description: Risk factors for persistent pain after arthroscopic rotator cuff repair
DOI: 10.6084/m9.figshare.28938803.v1
title: Searching for the Best Medicine: A Hospital Library's Approach to Addressing the Information Needs of Pharmacy Staff

description: Presented at the Medical Library Association 2025 Conference in Pittsburgh, PA, this poster covers a needs assessment and planning procedure taken on by the Savitt Medical Library to serve pharmacists and pharmacy techs at their hospital satellite library.
DOI: 10.17632/sjmrz25g38
title: Dragonfly vs Scanco

description: Mixed Agreement Between Measures of Murine Trabecular Microarchitecture Analyzed with Dragonfly versus Scanco Analysis Software (Little-Letsinger; under review at Bone)

1. Raw microCT data exported from Dragonfly and Scanco (R imports) 

2. Aggregated data organized and grouped using RStudio (R dataframes)

3. All coding files used to import, organize, export, analyze and graph the data (R scripts)
DOI: 10.17632/sw9rrsr3rt
title: Dataset of Chinese listed firms' internationalization

description: This dataset contains raw data on the internationalization of Chinese multinational enterprises (CMNEs') listed on the Shenzhen and Shanghai stock exchanges.  we normalize the names of subsidiaries in the subsidiaries list obtained from CSMAR by manually collecting data from listed firms' annual reports and websites. Based on this accurate list of firms’ subsidiaries, we then calculate variables related to firms’ internationalization.
DOI: 10.6084/m9.figshare.11283758.v3
title: Global Hydropower Database (GHD) and hydroelectricity production (HP) model

description: 1. GHD comprises 8748 hydropower plants distributed across 134 countries.2. 0.5° global drainage direction map DDM30 (Döll & Lehner, 2002)3. R script of hydroelectricity production model4. .nc file used
DOI: 10.6084/m9.figshare.23978979.v2
title: Tāḍapatrapustakasūcī Nāmagyālatibbatādhyayanasaṃsthāne

description: A handlist of Sanskrit Buddhist texts comprising 189 individual titles. It is written across three folio sides in a script current in the Bihar-Bengal region in the early second millennium. Published in: 'A library handlist on palm leaves at Namgyal Institute of Tibetology,' <i>Bulletin of Tibetology </i>54(2), 7–36.
DOI: 10.6084/m9.figshare.26197928.v1
title: Defect Detection Algorithms Including YOLOv3 to YOLOv8

description: Defect Detection Algorithms Including YOLOv3 to YOLOv8
DOI: 10.6084/m9.figshare.27679509.v1
title: Data associated with manuscript 'Enhanced encephalitic tropism of bovine H5N1 compared to the Vietnam H5N1 isolate in mice'

description: In recent years, the landscape of highly pathogenic avian influenza (HPAI) virus infections has shifted, as evidenced by an increase in infections among mammals. This includes the recent circulation of H5N1 in dairy cattle herds in the USA and a rise in associated human cases. In this study, we investigated differences in tissue tropism of two HPAI H5N1 strains, the isolate A/Vietnam/1203/2004 (VN1203) isolated from a fatal human case in 2004 and the bovine isolate A/Bovine/Ohio/B24osu-342/2024 (Bov342) isolated in 2024, in C57BL/6J mice. Infection with either HPAI H5N1 isolate was uniformly lethal in mice. However, tissue tropism differed significantly: while VN1203 replication was largely restricted to the respiratory tract, Bov342 successfully replicated in the respiratory tract as well as various regions of the brain. Bov342-challenged animals exhibited clinical signs consistent with central nervous system (CNS) infection, and infectious virus was detected in brain tissue. Correspondingly, cytokine profiles in the brain differed significantly between the isolates. Notably, in addition to abundant evidence of CNS infection in Bov342-challenged mice via immunohistochemistry, sporadic intranuclear and intracytoplasmic immunoreactivity was observed in other tissues in the head, including the choroid plexus, retina, and inner ear. This study demonstrates that while both HPAI H5N1 isolates are uniformly lethal in C57BL/6J mice upon aerosol exposure, significant differences exist in tissue tropism, with Bov342 resulting in respiratory disease as well as increased neurotropism and inflammation in the brain and nasal turbinates compared to VN1203, which predominantly induces respiratory disease.
DOI: 10.6084/m9.figshare.4592446.v3
title: show_bug.cgi-xxxx.xml

description: List of Bugs for several projects from Bugzilla in xml format. Predictions are shown in * .dat files, first cilumn indicates time in days, second column indicates failure number.<br>
DOI: 10.6084/m9.figshare.22682512.v1
title: Dataset for the article titled 'Automatic Identification of Individual Nanoplastics by Raman spectroscopy based on Machine Learning'

description: <strong>Establishment of nanoplastic dataset. </strong> The spectra included in the nanoplastic database were obtained directly from the plastic samples. To establish the internal Raman spectral dataset, a total of 1,000 individual nanoparticles were examined, encompassing five common plastic contaminants, namely Polyethylene (PE), polytetrafluoroethylene (PTFE), Polystyrene (PS), polymethyl methacrylate (PMMA) and Polyvinyl chloride (PVC). For each specific plastic category, 200 nanoparticles were selected for subsequent analysis. <br> <strong> </strong><strong>Content</strong><strong> </strong> In each txt file corresponding to a Raman spectrum, the first two columns are the corresponding X and Y coordinates, respectively. The columns are: X-coordinate - wavenumber, Y-coordinate - Raman signal intensity. <br> More data are available upon request for research purposes only. Please send an email to zhanglw@fudan.edu.cn with a brief description of the purpose of use and your request for more data.
DOI: 10.6084/m9.figshare.22802639.v1
title: Oncorhynchus tshawytscha bowtie1 index

description: Bowtie1 index generated from individual chromosome files for Chinook salmon (Oncorhynchus tshawytscha) based on Ensembl release 105 (Otsh_v1.0 - GCA_002872995.1). Index was initially used to align small RNA reads for identification of microRNA altered due to increased ploidy and infection. <br> Genome information: Otsh_v1.0.dna.primary_assembly.1.fa Otsh_v1.0.dna.primary_assembly.2.fa Otsh_v1.0.dna.primary_assembly.3.fa Otsh_v1.0.dna.primary_assembly.4.fa Otsh_v1.0.dna.primary_assembly.5.fa Otsh_v1.0.dna.primary_assembly.6.fa Otsh_v1.0.dna.primary_assembly.7.fa Otsh_v1.0.dna.primary_assembly.8.fa Otsh_v1.0.dna.primary_assembly.9.fa Otsh_v1.0.dna.primary_assembly.10.fa Otsh_v1.0.dna.primary_assembly.11.fa Otsh_v1.0.dna.primary_assembly.12.fa Otsh_v1.0.dna.primary_assembly.13.fa Otsh_v1.0.dna.primary_assembly.14.fa Otsh_v1.0.dna.primary_assembly.15.fa Otsh_v1.0.dna.primary_assembly.16.fa Otsh_v1.0.dna.primary_assembly.17.fa Otsh_v1.0.dna.primary_assembly.18.fa Otsh_v1.0.dna.primary_assembly.19.fa Otsh_v1.0.dna.primary_assembly.20.fa Otsh_v1.0.dna.primary_assembly.21.fa Otsh_v1.0.dna.primary_assembly.22.fa Otsh_v1.0.dna.primary_assembly.23.fa Otsh_v1.0.dna.primary_assembly.24.fa Otsh_v1.0.dna.primary_assembly.25.fa Otsh_v1.0.dna.primary_assembly.26.fa Otsh_v1.0.dna.primary_assembly.27.fa Otsh_v1.0.dna.primary_assembly.28.fa Otsh_v1.0.dna.primary_assembly.29.fa Otsh_v1.0.dna.primary_assembly.30.fa Otsh_v1.0.dna.primary_assembly.31.fa Otsh_v1.0.dna.primary_assembly.32.fa Otsh_v1.0.dna.primary_assembly.33.fa Otsh_v1.0.dna.primary_assembly.34.fa <br> Bowtie1 information: bowtie version 1.1.2<br> 64-bit
DOI: 10.6084/m9.figshare.25024958.v2
title: Data from "Hidden rivals: the negative impacts of dolphinfish on seabird foraging behavior"

description: ForagingTrip_inSOJ_Parameter.csv: This table shows parameters of foraging trips by streaked shearwaters (<i>Calonectris leucomelas</i>) breeding in Awashima Island, Japan. Only foraging trips completed in the Sea of Japan (SOJ) are shown in the table. 'Trip duration' serves as an indicator of the time cost associated with foraging, while 'maximum distance from the colony' reflects the geographical spread of the streaked shearwaters.
DOI: 10.6084/m9.figshare.28616921.v1
title: Saying No to Help - Masculinity, Self-Stigma of Seeking Help, Asian Values and Mental Help-Seeking Among Indian Men (Responses)

description: The study investigated the association between masculine norms, Asian values, self-stigma of seeking help, and mental help-seeking attitudes amongst 403 Asian Indian men aged 18 to 29 years. Moreover, the study also aimed to find a moderation effect of Asian values and the mediation effect of Self-Stigma of seeking help on the association between masculine norms and mental help-seeking attitudes.
DOI: 10.6084/m9.figshare.29099807.v2
title: CMD and 4WHMD data

description: the data has the initial data of CMD and 4WHMD vehicle for DOE. on the other hand, evluation data for both before optimization and after optimization are upload.
DOI: 10.6084/m9.figshare.7283567.v1
title: ACi-TGlob_V1.0: A Global dataset of photosynthetic CO2 response curves of terrestrial plants.

description: This database accompanies the publication "Kumarathunge et al (2019) Acclimation and adaptation components of the temperature dependence of plant photosynthesis at the global scale”. New Phytologist (https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.15668) This database is a collection of published and unpublished data sets. For the list of the original source, data contributors and detailed methods, please see the <i>data_descriptor_V1.0</i>. Variable description and meta data are given in <i>ACi-TGlob_V1.0_metadata.csv </i>and supplementary information Table S1 in the manuscript above.<br> All users should cite the above manuscript and the dataset <br> Contacts:<br> Dushan Kumarathunge (dkumarathunge@gmail.com) Belinda Medlyn (b.medlyn@weternsydney.edu.au)<br>
DOI: 10.17632/chz389f8dd
title: Data on Investigation of Metabolomics and Ionomics of Humulus lupulus grown in India

description: The present investigation is on GC-MS data of organic and LC-MS data of aqueous extracted Humulus lupulus plant grown in India. Also, the data related to the elemental profiling of the soil using ICP-MS is presented.
DOI: 10.17632/d7kbzjr83k
title: Vegetable Crops Dataset for Proximal Sensing (VCD)

description: RGB images of vegetable crops (bean, maize and leek) at an early stage of development (2 to 5 weeks). Bounding boxes annotations and crop structure annotations (star graphs) are provided.
DOI: 10.17632/p2kp38hhfz
title: Let Me Think About It: How More Choices Boost Charitable Giving

description: We ran an online experiment (N=3,200) investigating the effect of choice on charitable giving. Participants were endowed with 200 tokens which represented £2.50 in real money (100 tokens = £1.25). They can then choose whether to donate the money to charities, or whether they will keep it for themselves. They are allowed to donate as much or as little money as they like, and the money donated was sent to the charities after the experiment was completed. Each participant also received a rate of £10/hour participation fee and the experiment was 15 minutes.
Participants are allowed to drop out before the experiment proper, an option which 200 participants took. They keep all the money without taking part in the rest of the experiment at all, save for a short demographic questionnaire and a few follow up questions asking why they left. Participants were reassured throughout the experiment that they were allowed to keep all the money for themselves and the experiment was not investigating selfish behaviour. Even when in the experiment proper, donating 0 is always an option. 
The experiment proceeds as follows. Each participant has two rounds of donations, for each of which they have 100 tokens. You cannot carry tokens over to the second round. In each round, participants are randomly allocated between having a ‘high’ number of charities to donate to (40) and a ‘low’ number of charities to donate to (5). In addition, participants are randomly allocated to one of four treatments which remain the same across the whole experiment (for them):
(1) The 1Choice arm, where they can choose one out of a list of charities to donate to.
(2) The MChoice arm, where they can split their donation between multiple charities.
(3) The 1ChoiceDefault arm, where they can choose only one charity and a default option is pre-selected for them.
(4) The Perceived Importance arm, where they see how many charities are devoted to a given cause before they pick it.
The Perceived Importance arm is slightly different to the others because there is only one round as the subjects choose the cause out of four categories. There are multiple specific charities and donation purposes within each cause. The causes are: Animal Welfare, Housing and Hunger, Children & Youth, and Health & Medicine. The number of options (5 or 40) within each of these four causes is displayed in the Perceived Importance arm only. 
After the experiment, participants are asked a series of demographic questions, as well as questions about their choices including their satisfaction, how difficult the choice was, and other candidate moderators/mediators.
DOI: 10.17632/y62b4pfyz2
title: Fabric Defect

description: A custom dataset of fabric defects was constructed, utilizing images captured from garments with various imperfections. The dataset comprises 2468 high-quality images and each image to ensure quality. The dataset contains images of six types of fabric defects. The dataset has Button-hike (307 images), Broken-button (545 images), Hole (556 images), Color-defect (384 images), Foreign-yarn(334 images), and Sewing-error (317 images). To address potential limitations arising from a finite dataset size, data augmentation techniques were employed. This augmentation process enhanced the model's ability to generalize to unseen variations in fabric defects. The images were manually annotated with defect type and bounding box information. The image annotation contains a class label, bounding box center (x,y), height, and width. For this research, datasets of the defects were collected from various garment manufacturers with their consent. However, Data collection is an ongoing process. Researchers interested in the dataset can contact us for access.
DOI: 10.6084/m9.figshare.24637368.v1
title: Copper and Iron composition

description: The data sets contain one folder dedicated to copper and one to iron. Each of them can be used for two distinct purposes: regression and image segmentation. For regression, the microscopical images from the "copper-images" and "iron-images" folders can be used directly. The file names contain the XRF approximation of elemental composition for several elements. These represent the ground truth. The string encoding has the following format:element1_value1__element2_value2__element3_value3 - object name__i.jpg Example: Cu_0.03__Fe_98.16__P_0.14__Si_1.49__6 - Cui roman - fier - inainte__1.jpgThis reads that the copper is 0.03%, iron composition is 98.16% etc. and the image is the first (last part, "__1", before ".jpg") from the object "Cui roman - fier - inainte". The images made for the same object will contain the same string for the object name. The information can be extracted using a string tokenizer.For image segmentation, the same images from "copper-images" and "iron-images" folders can be used together with the associated masks from "copper-labels" and "iron-labels". The label files have the same resolution and each pixel value corresponds to a certain class. The classes are provided in the text files "copper-codes.txt" and "iron-codes.txt". The file names of the images used for validation and test purposes are given in the text files "copper-valid.txt", "iron-valid.txt", "copper-test.txt", and "iron-test.txt", respectively. The data set is described in the article below. Results on the data can be found in the article, as well.Ruxandra Stoean, Nebojsa Bacanin, Catalin Stoean, Leonard Ionescu, Miguel Atencia, Gonzalo Joya, Computational Framework for the Evaluation of the Composition and Degradation State of Metal Heritage Assets by Deep Learning, Journal of Cultural Heritage, 64, pp.198-206, 2023, https://doi.org/10.1016/j.culher.2023.10.007.If you publish material based on the current database, please refer the paper above within the References.The study took part within the project Object PErception and Reconstruction with deep neural Architectures (OPERA) https://sites.google.com/view/pce-opera/.
DOI: 10.6084/m9.figshare.25837876.v1
title: NICE CCAA Collaboration: NICE APACHE IV to II mapping tables

description: This table is supplementary to the manuscript <b>Using the OMOP Common Data Model for a multi-registry ICU benchmarking federated analysis: lessons learned.</b>DescriptionNICE maps APACHE VI reasons for admission to APACHE II reasons for admission so coefficients can be assigned for APACHE II score calculation. This is the mapping table used.
DOI: 10.6084/m9.figshare.28837370.v1
title: <b>16s rRNA sequencing for </b><b>Mapping</b><b> Pesticide-Induced Metabolic Alterations in Human Gut Bacteria</b>

description: In the mono-colonization experiments, B. ovatus was cultured in an anaerobic chamber and their identities were confirmed through phenotype verification using GAM plate streaking and PCR primers. For B. ovatus, the primers used were as follows: Forward: 5'-3' TGCAAACTRAAGATGGC and Reverse: 5'-3' CAAACTAATGGAACGCATC. After culturing for 24 hours, a 10 mL saturated bacterial culture was centrifuged and washed three times with PBS. The bacterial pellets were then resuspended in 10 × 1 mL sterile PBS in 2 mL sterile Eppendorf tubes. In the BO group, mice were colonized with <i>B. ovatus</i> ATCC8483 (approximately 8 × 10^6 colony-forming units (CFU)) obtained from the saturated cultures. This colonization process involved orally administering 200 μL of the respective cultures through gavage. On the other hand, mice in the ABX and Control groups were only orally gavaged with 200 μL of PBS. Fecal samples were collected both before and after mono-colonization for phenotype verification. The sterile water was replaced and documented every 2 days, and sterile food was refreshed and recorded on a weekly basis.Regarding pesticide exposure, once successful mono-colonization was achieved, the mice from the Control, and BO groups were subjected to a 4-week exposure to 0.1 μg/mL of 4,4’-DDE in their drinking water. Meanwhile, the mice in the ABX group received sterile water without pesticide. The drinking water was replaced and documented every 2 days, and sterile food was refreshed and recorded on a weekly basis. Prior to and after mono-colonization, 16S amplicon sequencing was performed on the V4 region (515F, 806R) of microbial populations found in individual mice's feces.
DOI: 10.6084/m9.figshare.14716626.v1
title: Supplementary Material for: Novel Guarded Needle Trans-Scleral Biopsy for Uveal Melanoma: A Pilot Study

description: <b><i>Introduction:</i></b> Trans-scleral biopsy of uveal melanoma (UM) poses an inherent risk of tumor and possibly retinal perforation. We describe a novel technique for trans-scleral biopsy of UM and evaluate its safety and efficacy in an initial cohort of patients. <b><i>Methods:</i></b> A retrospective, consecutive observational case series was conducted from October 14, 2019, to April 15, 2020, at Kaiser Permanente, San Francisco, CA among patients with UM of the ciliary body or anterior choroid undergoing trans-scleral fine-needle aspiration biopsy using a novel guarded needle technique. <b><i>Results:</i></b> A total of 6 patients were included in the study, with a mean age of 64.3 (range 35–77) years (5 women 83%). Mean (±SD) tumor thickness and maximal basal diameter were 6.4 (±2.66) and 11.9 (±2.13) mm, respectively. Five out of 6 patients achieved a successful biopsy with reliable gene expression profiling (GEP) results. The only failure to obtain specimen occurred in the first attempted patient and, after a minor technique modification, all subsequent biopsies were successful. No intraoperative or short-term postoperative complications were observed in any patient. <b><i>Conclusion:</i></b> This novel trans-scleral biopsy technique appears to be safe and effective when obtaining UM tissue for GEP. This method may provide a more controlled biopsy depth thereby minimizing the risk of tumor perforation and its associated complications while still obtaining adequate biopsy yield.
DOI: 10.6084/m9.figshare.23289452.v2
title: Exoskeleton, Inertial Measurement Unit, and Forceplate Data: Manuscript submitted to PLOS ONE

description: Intertial measurement unit, forceplate, electromyography, and exoskeleton mechanical outputs for experiment walking on a treadmill and outside overgroud. Exoskeletons controlled by a custom proportional myoelectric controller implemented via a Raspberry pi 4.0.
DOI: 10.6084/m9.figshare.23744283.v1
title: Collusion-Dataset

description: These are the datasets used in the study for Detection of Collusion in Online Assessments.
DOI: 10.6084/m9.figshare.26304157.v1
title: MiR-206 Suppresses Triacylglycerol Accumulation via Fatty Acid Elongase 6 in Dairy Cow Mammary Epithelial Cells

description: MicroRNAs (miRNAs) can regulate the expression of target genes and modulate various biological processes, including lipid metabolism. Specifically, miR-206 impaired lipid accumulation in nonruminant hepatocytes. However, the effect and regulatory mechanisms of miR-206 on lipid metabolism in bovine mammary cells remains unclear. In the present study, we investigated the effects of miR-206 and its target gene on lipid metabolism in bovine mammary epithelial cells (BMECs). The results revealed that miR-206 overexpression significantly decreased the triacylglycerol (TAG) concentration and the abundance of acetyl-coenzyme A carboxylase alpha (ACACA), fatty acid synthase (FASN), sterol regulatory element binding transcription factor 1 (SREBF1), diacylglycerol acyltransferase 1 (DGAT1), 1-acylglycerol-3-phosphate O-acyltransferase 6 (AGPAT6), lipin 1 (LPIN1), and fatty acid elongase 6 (ELOVL6) coupled with an increase in patatin-like-phospholipase domain containing 2 (PNPLA2). Inhibition of miR-206 resulted in promotion of milk fat metabolism in vitro. Using a dual luciferase reporter assay, we demonstrated that ELOVL6 is a target of miR-206. Furthermore, intervention of ELOVL6 significantly downregulated the TAG level and elongation index of C16:0 and C16:1n-7 in BMECs. Finally, ELOVL6 siRNA partially alleviated the increased TAG accumulation caused by miR-206 inhibition. In summary, miR-206 inhibits milk fatty acid synthesis and lipid accumulation by targeting ELOVL6 in BMECs.
DOI: 10.6084/m9.figshare.28547603.v1
title: Supplement for "β-nicotinamide mononucleotide production in Vibrio natriegens: a preliminary study"

description: This study aimed to evaluate the prefeasibility of nicotinamide mononucleotide (NMN) production in Vibrio natriegens by overexpressing genes coding for nicotinamide phosphoribosyltransferase (NAMPT) from various bacteria. Our work has showed that V. natriegens represents a promising alternative for the production of this nutraceutical compound.
DOI: 10.6084/m9.figshare.28595522.v1
title: Altermagnetic Ground State in Distorted Kagome Metal CsCr<sub>3</sub>Sb<sub>5</sub>

description: Band structure data and symmetrized Wannier Hamiltonian
DOI: 10.1184/rdl/140904
title: Pittsburgh Cold Study 1 Data Set
DOI: 10.17632/9trkp6r3n4
title: Trajectories and prognosis after discontinuation of biologics due to remission in psoriasis – a nationwide cohort study - supplementary materials

description: Supplementary materials for the reseach project investigating the trajectories and prognosis of patients with psoriasis after discontinuation of biologics due to remission.