cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.1500/2
title: Mimulus guttatus DUN x IM RIL reciprocal transplant field measurements.xls

description: This excel file includes field measurements for 1-3 replicates (means) of 191 Recombinant Inbred lines (RILs) created from parents of two distinct ecological races of Mimulus guttatus:IM & DUN. These RILs were backcrossed to unrelated individuals of IM & DUN to generate BC-IM & BC-DUN lines, which were phenotyped in the natural field environment near where the original parents were collected, at the Oregon Dunes National Recreation Area & in the Western Cascades Mountains, Oregon. Detailed description of the lines & populations are in Hall & Willis (2006) Evolution 60:2466-2477. Sites are "IM" for Cascades, OR & "DUN" for Oregon Dunes. Traits are: ww=corolla wide width, ctl=corolla tube width, lw=leaf width, st=stem thickness, date1=date of first flower production, lvs=maximum number of leaves, diam=maximum rosette diameter, ht=maximum plant height, stol=stolon number, flrs=total flower number, F1=total 1st year seed production, P1=year 1 survival, F2=year 2 seed production, P2=year 2 survival, lambda=lifetime fitness
DOI: 10.5061/dryad.1513/1
title: Microsatellite genotypes of captive lowland tapirs in Argentina

description: Length, in base-pairs, of alleles at 13 microsatellite loci in 41 individuals of captive lowland tapirs. Missing data coded as -9. Data collected with funds from the Copenhagen Zoo, Martha Pipper Research Award, and Canadian Foundation for Innovation.
DOI: 10.5061/dryad.1521/1
title: Methylation sensitive AFLP data of Dactylorhiza allopolyploids

description: The data is provided in four tabs: the "Original" tab contains the initial information obtained from the two paired profiles per individual (i.e., MspI and HpaII); the "Unmethylated" tab includes fragments present in both profiles simultaneously; the "MeCpG" tab includes the information from MspI; the "hemiMeCpCpG" tab includes the information from HpaII. Redundant information between the last 3 tabs has been retained only once.
DOI: 10.5061/dryad.1808/1
title: Steevesetalmicrosatellitedata.xls

description: Each row represents one individual. Columns represent (in order of appearance): sample number, conservation management category, plumage node, genotype at each of eight microsatellite loci.
DOI: 10.5061/dryad.1821/1
title: nexus alignment of salamanders
DOI: 10.5061/dryad.8120/3
title: tmDNA.nex

description: Morphological character matrix of Vallin and Laurin (2004), supplemented with DNA sequences from the RAG-1 gene. Analyzed using MrBayes to produce Fig. 2.
DOI: 10.5061/dryad.8120/4
title: tmDNA.tre

description: FIGURE 2. Bayesian phylogeny of the lissamphibians and related tetrapods based on 161 morphological characters, supplemented with molecular data (RAG-1, 2652bp) for the eight extant taxa. Numbers above nodes represent Pp values based on 45 million post-burnin generations from MrBayes from analysis of tmDNA.nex.
DOI: 10.5061/dryad.8120/6
title: tma.tre

description: FIGURE 3. Bayesian phylogeny of the lissamphibians and related tetrapods based on 161 morphological characters for 41 fossil taxa, combined with molecular data  (RAG-1, 2652bp) for 34 extant taxa, 8 of which also had morphological data. Numbers above nodes represent Pp values based on 45 million post-burnin generations from MrBayes analysis of tma.nex.
DOI: 10.5061/dryad.8186/1
title: Toju_AmNat_MS52288

description: The data used for the statistical analysis of each figure/table are shown in each excel sheet.
DOI: 10.5061/dryad.8274/1
title: MER 10-0368R1

description: Figures and tables; include taxonomical data, divergence values and NJ trees of Nayband fish samples as well as a number of comparisons with similar species from other seas
DOI: 10.5061/dryad.8277/1
title: trait (moutling) data
DOI: 10.5061/dryad.8277/2
title: weather data

description: contains the weather data
DOI: 10.5061/dryad.8374/1
title: sp
DOI: 10.5061/dryad.8376/1
title: dll
DOI: 10.5061/dryad.8378/1
title: P_element_arrays_vetted

description: Microarray Data set for this study. See readme file.
DOI: 10.5061/dryad.8445/1
title: Online Appendix C

description: Contents:Table C1 – Site data for 24 headwater streams in the southern Blue Ridge.Table C2 – Observed benthic macroinvertebrate densities.Table C3 – Trait scores for North American aquatic insects.Table C4 – Trait descriptions.
DOI: 10.5061/dryad.8484/1
title: Data_FirstMidLast
DOI: 10.5061/dryad.8527/1
title: S. apama image stats data

description: Data from images collected in field for spatial frequency power spectra, resulting log-log slopes, and pixel intensity variance (PIV). Includes sheets for camouflaging animals, signaling animals, corresponding backgrounds, and control images.
DOI: 10.5061/dryad.9039/1
title: DRYAD_Data_MEC_11_0123_Submitted

description: ID = badger ID, Age = age in years when the cub(s) was born, Year = code for the year in which the cub(s) were born, No_Cubs = number of cubs that were assigned to the individual in that year, AFB = age of first breeding (age [years] at which they were first assigned parentage), ALB = age of last breeding (age [years] at which they were last assigned parentage), sex = 2 (female) or 1 (male), Terminal_event = 1 (last breeding attempt, whether or not this was successful) or 0 (all other breeding attempts), Probability_Bred = 0 (not assigned cubs in that year) or 1 (assigned cubs in that year)
DOI: 10.5061/dryad.t49d5/1
title: S_leucogaster_sampleNames_locations_genotypes
DOI: 10.5061/dryad.1454/1
title: Mitochondrial DNA sequences for California sea lions in Mexico
DOI: 10.5061/dryad.1454/2
title: Microsatellite allele data of California sea lions in Mexico
DOI: 10.5061/dryad.1544/1
title: WhitenackMottaCrabPunct.pdf

description: PDFs contain force-displacement traces for all successful performance testing trials. Methods can be found in the original publication (Whitenack & Motta 2010. “Performance of shark teeth during puncture and draw: implications for the mechanics of cutting.” Biological Journal of the Linnean Society). “WhitenackMottaCrabPunct.pdf” – contains all graphs for puncture tests on blue crab Callinectes sapidus. Each color represents a different individual shark tooth.
DOI: 10.5061/dryad.1544/2
title: WhitenackMottaDraw.pdf

description: PDFs contain force-displacement traces for all successful performance testing trials. Methods can be found in the original publication (Whitenack & Motta 2010. “Performance of shark teeth during puncture and draw: implications for the mechanics of cutting.” Biological Journal of the Linnean Society). “WhitenackMottaDraw.pdf” – contains all graphs for unidirectional draw tests on white grunt Haemulon plumieri. Each color represents a different individual shark tooth.
DOI: 10.5061/dryad.1544/3
title: WhitenackMottaLadyPunct.pdf

description: PDFs contain force-displacement traces for all successful performance testing trials. Methods can be found in the original publication (Whitenack & Motta 2010. “Performance of shark teeth during puncture and draw: implications for the mechanics of cutting.” Biological Journal of the Linnean Society). “WhitenackMottaLadyPunct.pdf” – contains all graphs for puncture tests on ladyfish Elops saurus. Each tooth is represented by a color group (blues, reds, or greens), while individual colors within each color group represents a separate trial.
DOI: 10.5061/dryad.1544/4
title: WhitenackMottalBonnetPunct.pdf

description: PDFs contain force-displacement traces for all successful performance testing trials. Methods can be found in the original publication (Whitenack & Motta 2010. “Performance of shark teeth during puncture and draw: implications for the mechanics of cutting.” Biological Journal of the Linnean Society). “WhitenackMottaBonnetPunct.pdf” – contains all graphs for puncture tests on the bonnethead shark Sphyrna tiburo. Each tooth is represented by a color group (blues, reds, or greens), while individual colors within each color group represents a separate trial.
DOI: 10.5061/dryad.1544/5
title: WhitenackMottaSheepPunct.pdf

description: PDFs contain force-displacement traces for all successful performance testing trials. Methods can be found in the original publication (Whitenack & Motta 2010. “Performance of shark teeth during puncture and draw: implications for the mechanics of cutting.” Biological Journal of the Linnean Society). “WhitenackMottaSheepPunct.pdf” – contains all graphs for puncture tests on sheepshead Archosargus probatocephalus. Each tooth is represented by a color group (blues, reds, or greens), while individual colors within each color group represents a separate trial.
DOI: 10.5061/dryad.1544/6
title: WhitenackMottaWhiteGruntPunct.pdf

description: PDFs contain force-displacement traces for all successful performance testing trials. Methods can be found in the original publication (Whitenack & Motta 2010. “Performance of shark teeth during puncture and draw: implications for the mechanics of cutting.” Biological Journal of the Linnean Society). “WhitenackMottaWhiteGruntPunct.pdf” – contains all graphs for puncture tests on white grunt Haemulon plumieri. Each tooth is represented by a color group (blues, reds, or greens), while individual colors within each color group represents a separate trial.
DOI: 10.5061/dryad.1821/2
title: trait data by species
DOI: 10.5061/dryad.1821/3
title: trait data by families
DOI: 10.5061/dryad.7891/4
title: thousand-logistic-rates-trees.tre

description: 1000 phylogenies simulated with the same parameters than the above one (the Newick file was compressed with gzip)
DOI: 10.5061/dryad.7956/1
title: AmNat_52253_Online_Appendix_A

description: Introduction data were based on information contained in: Kraus, F. (2009) Alien reptiles and amphibians: a scientific compendium and analysis. Springer, Netherlands.
DOI: 10.5061/dryad.8048/1
title: Raw data to calculate rate of adaptation

description: Raw dataset for rate of adaptation calculations (Figure 1) and related statistics.
DOI: 10.5061/dryad.8120/5
title: tma.nex

description: Morphological character matrix from Vallin and Laurin (2004) combined with DNA sequence data from the RAG-1 gene for additional lissamphibian taxa. Analyzed in MrBayes to produce Fig. 3.
DOI: 10.5061/dryad.8120/7
title: TMA_1Clock.xml

description: XML file from BEAST analysis of the combined molecular and morphological data, resulting in Fig. 4.
DOI: 10.5061/dryad.8120/8
title: TMA_1Clock.tre

description: FIGURE 4. Dated chronogram with branch lengths equal to time in millions of years (Ma), produced using the combined morphological and molecular dataset (Fig. 3) under the 1-clock model in the program BEAST. Blue bars at nodes represent the 95% HPD for the mean estimate of the age of that node, based on 90 million post-burnin generations. Nodes without bars are supported at Pp&lt;0.50. Nodes supported at Pp&gt;0.95 are indicated with an asterisk (*). Taxa present at time zero are extant, while non-contemporaneous tips are extinct species. Tip dates taken from Benton (1993) and Laurin (2004) and are given in Online Appendix A. Produced in BEAST through analysis of TMA_1Clock.xml.
DOI: 10.5061/dryad.8422/1
title: Puncinata treeline
DOI: 10.5061/dryad.84220/1
title: Michalski_etal_files
DOI: 10.5061/dryad.8484/2
title: Data_Broods
DOI: 10.5061/dryad.8529/1
title: Eilts et al AmNat 2011

description: First tab contains metadata about column headings from the subsequent two tabs, which contain the field collected data.
DOI: 10.5061/dryad.9150/1
title: Rainbowtrout_microsatellites_rawdata

description: Raw microsatellite sizes of 15 established populations and 4 farmed populations of Rainbow trout in Chile
DOI: 10.5061/dryad.n40h2/4
title: ST6

description: Supplementary Table 6: Locus by locus tabulation of allele frequencies broken down by results of categorical genetic assignments.
DOI: 10.5061/dryad.t81s0/1
title: Blackburn&Rodel_Phrynobatrachus_schioetzi

description: Nexus file containing aligned mtDNA (12S, tRNA-Valine, 16S) for species of Phrynobatrachus.
DOI: 10.5061/dryad.1558/1
title: reference, subpopulation, genotype
DOI: 10.5061/dryad.157/1
title: Interspecific Analysis for SNPs in EST Libraries of Oil Palm- Elaeis Guineensis  and E. Oleifera

description: Oil palm is the second largest source of edible oil, which contributes to approximately 20% of the world's production of oils and fats. Expressed sequence tag (EST) sequencing programs have provided a wealth of information, identifying novel genes from a broad range of organisms and providing an indication of gene expression level in particular tissues. It also provides the richest source of biologically useful SNPs due to the relatively high redundancy of gene sequence, the diversity of genotypes represented within databases, and the fact that each SNP would be associated with an expressed gene. There are cultivated two species of oil palm, Elaeis guineensis Jacq. from tropical western Africa and E. oleifera from Americas. Interspecific SNP detection carried but by choosing Lambda Zap II libraries of both species. Auto_snp perl script was used to cluster the ESTs and detect SNPs. A total of 163 EST sequences belong to Lambda zap libraries analysed here, interestingly we have found 60 SNP site (35 Transition transversion 25 ) in this species specific sequences. Labda Zap tissue also shows the similar pattern of SNPs, such as transition type mutation is higher than trasnversion type in Oil palm (Riju et al, 2007).
DOI: 10.5061/dryad.1576/1
title: AFLP data in nexus format
DOI: 10.5061/dryad.1580/1
title: sequence file for Nanorana yunnanensis.txt

description: The sequences were obtained for all samples collected in the field, and the data file was created using the software MEGA 3.1. The column heading for each sequence is comprised of GenBank Accession No. and sequence description which include the species name and gene componants et al.
DOI: 10.5061/dryad.1584/1
title: 10-0237-Sequences.fas
DOI: 10.5061/dryad.7968/1
title: Qualitative protein identifications in a comparative screen among A10, A35 and A4 S. mansoni adult clones

description: For each spot, the name(s) of protein(s) identified, species and database accession numbers, peptide number and MASCOT score are reported.*: signal anchor and signal peptide (SP) were predicted using SignalP 3.0.
DOI: 10.5061/dryad.7968/2
title: Quantitative protein identifications in a comparative screen among A10, A35 and A4 S. mansoni adult clones

description: For each spot, the name(s) of protein(s) identified, species and database accession numbers, peptide number and MASCOT score are reported.ND: not done, NS: not significant.*: signal anchor and signal peptide (SP) were predicted using SignalP 3.0.
DOI: 10.5061/dryad.7pb8s/1
title: allele frequencies

description: Allele frequencies for all microsatellite loci
DOI: 10.5061/dryad.7pb8s/2
title: genepop file for 3 diploid loci

description: Microsatellite genotype data for three diploid loci
DOI: 10.5061/dryad.7pb8s/3
title: genotypes for Aox27

description: Tetraploid genotypes for the locus Aox27
DOI: 10.5061/dryad.7pb8s/4
title: individual rflp haplotypes

description: Individual site data for restriction fragment length polymorphism haplotypes.
DOI: 10.5061/dryad.8309/10
title: Lacer_MtDNA_haplofile_113Seqs_Pops.nex

description: L acervorum MtDNA sequences in nexus haplotype format with population information.
DOI: 10.5061/dryad.8309/11
title: Lmusc_MtDNA_IBDWS_format

description: L muscorum MtDNA data in IBDWS format.
DOI: 10.5061/dryad.8309/12
title: Lmusc_MtDNA_79Seqs_Pops.nex

description: L muscorum MtDNA sequences in nexus format with population information.
DOI: 10.5061/dryad.8309/8
title: Lacer_MtDNA_IBDWS_format

description: L acervorum MtDNA data in IBDWS format
DOI: 10.5061/dryad.8309/9
title: Lacer_MtDNA_113seqs_Pops.nex

description: L acervorum MtDNA sequences in nexus format with population information.
DOI: 10.5061/dryad.tp3g0/1
title: microsatellites data aphis fabae
DOI: 10.5061/dryad.1584/2
title: 10-0237-Simulators.zip
DOI: 10.5061/dryad.159/1
title: Greenhouse Near Puerto Ayora
DOI: 10.5061/dryad.159/10
title: Panorama of Miconia Zone on Cerro Media Luna

description: Much garua mist.Elev:	650 mZone:	MiconiaDate:	8/9/1999Time:	11:30 AMLat:	S 00° 39’Long:	W 90° 20’
DOI: 10.5061/dryad.159/11
title: CDRS, Fischer Building
DOI: 10.5061/dryad.159/12
title: Finch foraging on Ground (4)

description: Determination of species is left as an exercise for the student.
DOI: 10.5061/dryad.159/13
title: Finch foraging on Ground (1)

description: Determination of species is left as an exercise for the student.
DOI: 10.5061/dryad.159/14
title: Finch foraging on Ground (2)

description: Determination of species is left as an exercise for the student.
DOI: 10.5061/dryad.159/15
title: Panorama of Lava-tube Cave

description: Elev:	153 ‘ = 47 mLocation: 	Baltra Rd 2.5 km past Puerto AyoraZone:	TransitionDate:	8/11/1999Time:	12:50 PMLat:	S 00° 44.87’Long:	W 90° 18.87’
DOI: 10.5061/dryad.2r4gj/1
title: deme-stats

description: Data used to generate Figure 3 and related statistics.  Data collected from the wild and managed with JMP V.7
DOI: 10.5061/dryad.2r4gj/2
title: male-male-interactions

description: File used to calculate covariances, described as Cii and Cii (prime).  Data collected in the wild and managed with JMP v7.  Data used to generate figure Table 2 and used in calculation of Table 5.
DOI: 10.5061/dryad.2r4gj/3
title: Social-selection-gradient

description: Data collected in the wild and managed with JMP v7.  Data used in the calculation of Table 3, Table 4, and Table 5.  These are the data used to calculate selection gradients.  Also used to generate Figure 4.
DOI: 10.5061/dryad.6pn84/1
title: Gametophytes_MsatData

description: Microsatellite data for gametophytes - mother, sterile and male plants. Haploids coded as homozygous diploids.
DOI: 10.15156/bio/sh124694.07fu
title: SH124694.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh124695.07fu
title: SH124695.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh124696.07fu
title: SH124696.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh124697.07fu
title: SH124697.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh124698.07fu
title: SH124698.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.