cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1558053.v3
title: Quadrat sampling of vegetation types in Yorku Grassland situated near Stong Pond

description: The purpose of this lab is to determine the variety and composition of vegetation found within the grassland situated within York university grounds. The experiment was conducted in the grassland on the east side of campus near Stong Pond. The necessary and required equipments were one 1metre x 1metre quadrat. The data was collected on September 21st, 2015 at approximately 3pm. The temperature at the time was around 19 degrees celsius as well as it was sunny and partly cloudy with a little wind. There were several types of vegetation in the area. The most common ones noticed and was recorded in the data were the small yellow flowers that bloomed in clumps. There were small purple flowers that grew tall and as singles, white small flowers similar to the purple flowers. There were tall flowers that looked like a bulb at the top, it grew as a single flower. There was also another type of grass that grew all over the grassland, it was similar by shape to parsley leaves. There were weed like plants (leaves) similar to those from dandelion plants.The approach to sampling was random sampling. Once arrived upon the grassland sampling began at the edge where the grassland began. An object was thrown (anything thats solid like a ball) at random into the grassland, where the ball fell is where the quadrat was placed. Once the quadrat was placed the different types of plants were counted (richness) and how many plants in total in the quadrat was counted (abundance). Then one person estimated the percentage covered by grass and the percentage covered by other types of vegetation. Only one person did this job so that the estimations were based on one persons perspective avoiding biased data. The process of throwing the object at random and sampling the quadrat was done 25 times and observations were recorded in a table.
DOI: 10.3535/24n-ckj-wzp
title: †Bellerophon Montfort, 1808

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gxe-7az-fv5
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20221905.v1
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 115)

description: There are 17 files in this dataset. This is the 115 part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.6084/m9.figshare.6163565.v1
title: BoreholeData

description: Data set of the borehole observations
DOI: 10.3535/531-lms-d22
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/trd-s5s-c5g
title: †Holopea J. Hall, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26339512.v1
title: Ultra-AV: A unified longitudinal trajectory dataset for automated vehicle

description: We processed a unified trajectory dataset for automated vehicles' longitudinal behavior from 14 distinct sources. The extraction and cleaning of the dataset contains the following three steps - 1. extraction of longitudinal trajectory data, 2. general data cleaning, and 3. data-specific cleaning. The dataset obtained from step 2 and step 3 are named as the longitudinal trajectory data and car-following trajectory data. We also analyzed and validated the data by multiple methods. The obtained datasets are provided in this repo. The Python code used to analyze the datasets can be found at https://github.com/CATS-Lab/Filed-Experiment-Data-ULTra-AV. We hope this dataset can benefit the study of microscopic longitudinal AV behaviors.
DOI: 10.3535/nb0-adr-r3r
title: Cyclocrinites C.E.I. von Eichwald, 1840

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xab-tm6-stb
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.5255365.v2
title: OpenCitations Corpus dataset of all the bibliographic resources, archived on 2017-07-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) dataset about bibliographic resources, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.17632/vwgrk2pkk5
title: Hofmeister Effects of Anions on Self-assembled Thermogels

description: Thermogels are smart, temperature-responsive soft biomaterials with numerous biomedical applications. They possess high water content, and can spontaneously gelate by forming non-covalent physical crosslinks between their constituent amphiphilic polymers when warmed. However, despite the ubiquity of salts in biological fluids and buffer media, the influence of salts on thermogelling polymers and the overall physical properties of the resulting hydrogels are poorly understood. Herein, we elucidate the effects of common inorganic salts on the gelation and micellisation properties of a thermogelling polymer containing poly(ethylene glycol), poly(propylene glycol) and poly(caprolactone) components. The identity of the salts’ anions and their concentrations were found to exhibit significant effects on the thermogel properties, in some cases being able to decrease the sol-to-gel phase transition by up to 10 oC. We demonstrate that these notable influences are likely brought about by the changes in solvation of both the polymer’s hydrophobic and hydrophilic segments, as well as by direct interactions of poorly-hydrated anions with the hydrophobic polymer segments. Our findings demonstrate that the effects of salts on amphiphilic thermogelling polymers are non-negligible, and hence need to be taken into account for engineering and optimisation of thermogel properties for different biomedical applications.
DOI: 10.3535/4e6-rpp-l00
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xah-arj-3j5
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19610082.v1
title: VCF File with Site Metadata

description: A VCF file of 63,882 SNPs used in a study of walleye in Lake Winnipeg, Lake Manitoba, and Cedar Bluff Reservoir.
DOI: 10.6084/m9.figshare.3083692.v1
title: Perfusion Deficits and Functional Connectivity Alterations in Memory-related Regions of Patients with Post-Traumatic

description: PASL data for PTSD
DOI: 10.6084/m9.figshare.8115989.v3
title: Data file 3

description: Count file after mapping to Ptr genome
DOI: 10.3535/tat-a69-27k
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tjw-s90-1kr
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jee-ffc-vw6
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jxv-97r-g5k
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bhc-k1k-c9p
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kgz-dwf-mc3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1057805.v1
title: Multiple sequence alignment for NF1 and MNF

description: Multiple sequence alignment of NF1 and MNF protein sequences.
DOI: 10.6084/m9.figshare.19657206.v1
title: EuroSATsmall

description: This is a small subset of the EuroSAT RGB image dataset, downloaded from the public github repo https://github.com/phelber/eurosat. The data is partitioned such that the first 100 images of each class are in the training data and the second 100 images of each class are in the test data. <br> EuroSAT dataset is based on Sentinel-2 satellite images covering 13 spectral bands and consisting of 10 classes with 27000 labeled and geo-referenced samples. <br> Citations: [1] Eurosat: A novel dataset and deep learning benchmark for land use and land cover classification. Patrick Helber, Benjamin Bischke, Andreas Dengel, Damian Borth. IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, 2019. [2] Introducing EuroSAT: A Novel Dataset and Deep Learning Benchmark for Land Use and Land Cover Classification. Patrick Helber, Benjamin Bischke, Andreas Dengel. 2018 IEEE International Geoscience and Remote Sensing Symposium, 2018.
DOI: 10.6084/m9.figshare.22004483.v1
title: Visium DLPFC raw

description: Raw data from https://github.com/LieberInstitute/spatialLIBD used for the benchmarking of the spatial clustering methods in CellCharter.
DOI: 10.3535/1pv-sqs-62m
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3gr-009-e0z
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7177559.v1
title: Dataset 5 CUG clade homologs.xlsx

description: CUG clade homologs
DOI: 10.3535/2k5-f6g-ykt
title: Lingula Bruguière, 1791

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8xn-ybj-t4a
title: †Pollicina Koken, 1895

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cg8-r5e-dab
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/x7p-yw3-64m
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/g63-n70-6g5
title: Lingula Bruguière, 1791

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3551112.v1
title: Appendix C. Complementarity and selection effects for genotype and species polycultures excluding the focal plant from analyses.

description: Complementarity and selection effects for genotype and species polycultures excluding the focal plant from analyses.
DOI: 10.3535/764-57x-gvj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gvv-hzp-lk7
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14206586.v2
title: Trehalose causes low-grade lysosomal stress to activate TFEB and the autophagy-lysosome biogenesis response

description: The autophagy-lysosome system is an important cellular degradation pathway that recycles dysfunctional organelles and cytotoxic protein aggregates. A decline in this system is pathogenic in many human diseases including neurodegenerative disorders, fatty liver disease, and atherosclerosis. Thus there is intense interest in discovering therapeutics aimed at stimulating the autophagy-lysosome system. Trehalose is a natural disaccharide composed of two glucose molecules linked by a ɑ-1,1-glycosidic bond with the unique ability to induce cellular macroautophagy/autophagy and with reported efficacy on mitigating several diseases where autophagy is dysfunctional. Interestingly, the mechanism by which trehalose induces autophagy is unknown. One suggested mechanism is its ability to activate TFEB (transcription factor EB), the master transcriptional regulator of autophagy-lysosomal biogenesis. Here we describe a potential mechanism involving direct trehalose action on the lysosome. We find trehalose is endocytically taken up by cells and accumulates within the endolysosomal system. This leads to a low-grade lysosomal stress with mild elevation of lysosomal pH, which acts as a potent stimulus for TFEB activation and nuclear translocation. This process appears to involve inactivation of MTORC1, a known negative regulator of TFEB which is sensitive to perturbations in lysosomal pH. Taken together, our data show the trehalose can act as a weak inhibitor of the lysosome which serves as a trigger for TFEB activation. Our work not only sheds light on trehalose action but suggests that mild alternation of lysosomal pH can be a novel method of inducing the autophagy-lysosome system. <b>Abbreviations:</b> ASO: antisense oligonucleotide; AU: arbitrary units; BMDM: bone marrow-derived macrophages; CLFs: crude lysosomal fractions; CTSD: cathepsin D; LAMP: lysosomal associated membrane protein; LIPA/LAL: lipase A, lysosomal acid type; MAP1LC3: microtubule-associated protein 1 light chain 3; MFI: mean fluorescence intensity; MTORC1: mechanistic target of rapamycin kinase complex 1; pMAC: peritoneal macrophages; SLC2A8/GLUT8: solute carrier family 2, (facilitated glucose transporter), member 8; TFEB: transcription factor EB; TMR: tetramethylrhodamine; TREH: trehalase
DOI: 10.3535/1c2-yh0-kel
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6qf-fl5-7gb
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ges-kr6-6vj
title: †Holopea J. Hall, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vps-f1a-7dg
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rxt-953-ca6
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xjj-1k4-n9t
title: †Orthoceras Bruguière, 1789

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.c.3812662_d4.v1
title: Additional file 4: Table S4. of Dynamic high-sensitivity troponin elevations in atrial fibrillation patients might not be associated with significant coronary artery disease

description: Significance of clinically relevant background factors in prediciting dynamic hsTnT elevation. Patients with normal hsTnT values are excluded. (XLSX 10 kb)
DOI: 10.3535/004-wqw-kka
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xvn-qfv-qws
title: †Dalmanella Hall & Clarke, 1892

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22022540.v2
title: Annotated dataset for deep-learning-based bacterial colony detection

description: Quantifying bacteria per unit mass or volume is a common task in various fields of microbiology (e.g., infectiology, and food hygiene). Most bacteria can be grown on culture media. The unicellular bacteria reproduce by dividing into two cells, which increases the number of bacteria in the population. Methodologically, this can be followed by culture procedures, which mostly involve determining the number of bacterial colony-forming units on the solid culture media that are visible to the naked eye. However, it is a time-consuming and laborious professional activity. Addressing the automation of colony-forming unit counting by convolutional neural networks in our work, we have cultured 24 bacteria species of veterinary importance with different concentrations on solid media. A total of 56,865 colonies were annotated manually by bounding boxes on the 369 digital images of bacterial cultures. The published database will help developments that use artificial intelligence to automate the counting of bacterial colony-forming units.
DOI: 10.3535/5lt-dxp-g4k
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cp3-g8x-csj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13348394.v1
title: Solvent-free Synthesis and DFT Studies on Mechanistic Pathway of 4-Aryl-4,10-Dihydroindeno[1,2-<i>b</i>]Pyrazolo[4,3-<i>e</i>]Pyridin-5(<i>1H</i>)-ones

description: A novel, efficient, and grind stone procedure for the synthesis of pyrazolo[4,3-<i>e</i>]pyridine compounds at room temperature was reported. This methodology offers several advantages such as mild conditions, excellent yields, simple procedure, and reduced environmental consequences. The structures of synthesized 4-Aryl-4,10-dihydroindeno[1,2-<i>b</i>]pyrazolo[4,3-<i>e</i>]pyridin-5(1<i>H</i>)-ones were confirmed by <sup>1</sup>H, <sup>13</sup>C NMR, and FTIR spectral data and elemental analyses. The one-pot three-component condensation of various benzaldehydes, indandione, and 3-amino-5-methylpyrazole was investigated at the B3LYP/6-311G** level to explore the reaction mechanism as a theoretical study. All of routes were studied, structure of intermediates was optimized, and all of respective transition states were found. The calculation results proved that the proposed mechanism consists of four intermediates.
DOI: 10.6084/m9.figshare.28645979.v1
title: Character data before 1900

description: Duplicated from Underwood, Ted; Bamman, David; Lee, Sabrina, 2018, "Replication Data for: The Transformation of Gender in English-Language Fiction", https://doi.org/10.7910/DVN/ZM2MAN, Harvard Dataverse, V1
DOI: 10.3535/890-3wh-42w
title: Lingula Bruguière, 1791

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hkr-9az-xk5
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z6m-8j4-9d0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24941667.v1
title: Data for Framework for Implementation of Privacy and Security in Healthcare

description: Data used for <b>Framework for Implementation of Privacy and Security in Healthcare Using DBSCAN and TOPSIS Approach</b>
DOI: 10.17608/k6.auckland.14552652.v1
title: CN-SDQ repeated experiment SPSS data file

description: This data file supports the journal article written by Tanja Sobko and Gavin Brown and which appears in 2021 in the journal Challenges. The paper is entitled The influence of connectedness to nature on psychological well-being: Evidence from the randomized controlled trial Play&Grow. <br><br>Dr Sobko developed the Play&Grow intervention and collected all data. Dr Brown conducted the statistical analyses.<br>
DOI: 10.3535/6z5-mff-ycw
title: †Murchisonia d'Archiac & Verneuil, 1841

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8jk-39c-jt6
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1012586.v1
title: Parameters of the diabatic term

description: <b>Table 2.</b> Parameters of the diabatic term. <strong>Abstract</strong> Energy spectra of electrons ejected into <sup>3</sup>He<sup>2+</sup>–H<sub>2</sub> collisions have been measured in the incident ion energy range 6–30 keV. Parameters of the quasimolecule formed during the collision are determined. The dominant role of the channel (2a')<sup>2</sup> → 1a'3a' → 1a' + <em>e</em> in the production of electrons at keV ion energies has been revealed. The structure associated with autoionization transitions in the projectile helium atoms shows enormously large broadening and shift to lower energies.
DOI: 10.6084/m9.figshare.24945732.v1
title: Data of “Using Iron Stable Isotopes to Quantify the Origins of the Cryoconite Iron Materials in Western China and Exploring Controlling Factors”.docx

description: The Iron isotope data was used for interpreting the origin of croyoconite iron-bearing materials deposited onto the glacier surface of western China.
DOI: 10.6084/m9.figshare.4980578.v1
title: Computation of elastic constants of solids using molecular simulation: comparison of constant volume and constant pressure ensemble methods

description: We compute the elastic stiffness tensor of fcc argon at 60 K and 1 bar using molecular simulation tools. Three different methods are investigated: explicit deformations of the simulation box, strain fluctuations at constant pressure and stress fluctuations at constant volume. Statistical ensemble sampling is done using molecular dynamics and Monte Carlo simulations. We observe a good agreement between the different methods and sampling algorithms excepted with molecular dynamics simulations in the (NpT) ensemble. There, we notice a strong dependence of the computed elastic constants with the barostat parameter, whereas molecular dynamics simulations in the (NVT) ensemble are not affected by the thermostat parameter.
DOI: 10.3535/le5-jq0-8t8
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qad-086-5d0
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7649624.v2
title: Figure dataset for Dengler Haunreiter et al. Nature Communication 2019

description: Data behind the paper plots (main and supplemetary).<br>
DOI: 10.3535/4wc-z7j-yvr
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bc8-ff2-kbz
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/htv-dnk-1pe
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/v79-c5p-1t2
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.