cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5132164
title: Pimenteletal_sequence_alignment.nex

description: Sequence alignment used in the paper "<b>Diversification rates and chromosome evolution in the temperate grasses (Pooideae) are associated with major environmental changes in the Oligocene-Miocene</b>" by Pimentel M, Escudero M, Sahuquillo E, Minaya MA & Catalán P, submitted to PeerJ<br>
DOI: 10.6084/m9.figshare.5132170.v1
title: Undergraduate Mathematics Learner Corpus

description: This is a 667807 word learner corpus consisting of 79 final-year undergraduate mathematics dissertations contributed by students at 17 UK universities.<br>For further details, see https://dspace.lboro.ac.uk/2134/23388
DOI: 10.6084/m9.figshare.5132212.v1
title: Predicting e-bike users’ intention to run the red light :An application and extension of the theory of planned behavior.xlsx

description: This research aims to examine the psychological motivation of e-bike users’ RLR behaviors. A survey questionnaire was designed employing the construct of theory of planned behavior (TPB). This is the data.
DOI: 10.6084/m9.figshare.5132164.v1
title: Pimenteletal_sequence_alignment.nex

description: Sequence alignment used in the paper "<b>Diversification rates and chromosome evolution in the temperate grasses (Pooideae) are associated with major environmental changes in the Oligocene-Miocene</b>" by Pimentel M, Escudero M, Sahuquillo E, Minaya MA & Catalán P, submitted to PeerJ<br>
DOI: 10.6084/m9.figshare.5132134
title: Datasets, notes, variable list, and R script. from The potential pitfalls of studying adult sex ratios at aggregate levels in humans

description: Datasets, notes, variable list, and R script.
DOI: 10.6084/m9.figshare.5132128
title: dihydropyridine crystal CIF from Reactions of biologically inspired hydride sources with B(C<sub>6</sub>F<sub>5</sub>)<sub>3</sub>

description: crystallographic data CIF
DOI: 10.6084/m9.figshare.5132128.v1
title: dihydropyridine crystal CIF from Reactions of biologically inspired hydride sources with B(C<sub>6</sub>F<sub>5</sub>)<sub>3</sub>

description: crystallographic data CIF
DOI: 10.6084/m9.figshare.5132077
title: Supplementary material to: What do the REF results tell us about the relationship between excellent research and societal impact?

description: Underlying data of figures included in 'What do the REF results tell us about the relationship between excellent research and societal impact?' and supplementary figures.
DOI: 10.6084/m9.figshare.5132077.v1
title: Supplementary material to: What do the REF results tell us about the relationship between excellent research and societal impact?

description: Underlying data of figures included in 'What do the REF results tell us about the relationship between excellent research and societal impact?' and supplementary figures.
DOI: 10.6084/m9.figshare.5132035
title: Supplementary Material for: Cross-Sectional Guidelines for Therapy with Blood Components and Plasma Derivatives: Chapter 5 Human Albumin - Revised

description: Chapter 5 ‘Human Albumin' that was suspended on January 10, 2011 has been completed and updated in the present version.
DOI: 10.6084/m9.figshare.5132035.v1
title: Supplementary Material for: Cross-Sectional Guidelines for Therapy with Blood Components and Plasma Derivatives: Chapter 5 Human Albumin - Revised

description: Chapter 5 ‘Human Albumin' that was suspended on January 10, 2011 has been completed and updated in the present version.
DOI: 10.6084/m9.figshare.5132032
title: Supplementary Material for: Update on Female Cancer in Africa: The AORTIC Conference 2015, Morocco

description: Medicine
DOI: 10.6084/m9.figshare.5132023
title: Supplementary Material for: Valves in the Heart of the Big Apple VIII: Evaluation and Management of Valvular Heart Diseases 2014. Fifth Annual Joint Scientific Session of the Heart Valve Society of America and Society of Heart Valve Diseases, New York City, N.Y., May 8-10, 2014: Abstracts

description: Medicine
DOI: 10.6084/m9.figshare.5132026
title: Supplementary Material for: New Reference Values for Energy Intake

description: The reference values for energy intake of the German, Austrian and Swiss nutrition societies for children, adolescents and adults are derived using the factorial method. For adults, a mean BMI of 22 kg/m<sup>2</sup> is taken as a basis given the current mean body size for adults residing in Germany (taken from the German Health Interview and Examination Survey for Adults, DEGS1). The determination of the energy expenditure for infants is based on data obtained using the doubly labelled water (DLW) method. The energy storage in growing tissue will be added for the purpose of deriving reference values for this age group. For pregnant women, given an increase in body weight of 12 kg during pregnancy, guiding values for additional energy intake in the second trimester of 250 kcal/day and in the third trimester of 500 kcal/day are indicated using DLW data sets and taking energy storage in growing tissue into account. In case of overweight prior to pregnancy as well as in the case of reduced physical activity during pregnancy, the additional requirement is lower. For women exclusively breastfeeding during the first 4-6 months, the guiding value for additional energy intake is quoted as 500 kcal/day.
DOI: 10.6084/m9.figshare.5132029
title: Supplementary Material for: EASL-EASD-EASO Clinical Practice Guidelines for the Management of Non-Alcoholic Fatty Liver Disease

description: Medicine
DOI: 10.6084/m9.figshare.5132032.v1
title: Supplementary Material for: Update on Female Cancer in Africa: The AORTIC Conference 2015, Morocco

description: Medicine
DOI: 10.6084/m9.figshare.5132020
title: Supplementary Material for: Report of the Working Group ‘Overall Blood Supply Strategy with Regard to Variant Creutzfeldt-Jakob Disease (vCJD)’

description: Medicine
DOI: 10.6084/m9.figshare.5132029.v1
title: Supplementary Material for: EASL-EASD-EASO Clinical Practice Guidelines for the Management of Non-Alcoholic Fatty Liver Disease

description: Medicine
DOI: 10.6084/m9.figshare.5132023.v1
title: Supplementary Material for: Valves in the Heart of the Big Apple VIII: Evaluation and Management of Valvular Heart Diseases 2014. Fifth Annual Joint Scientific Session of the Heart Valve Society of America and Society of Heart Valve Diseases, New York City, N.Y., May 8-10, 2014: Abstracts

description: Medicine
DOI: 10.6084/m9.figshare.5132026.v1
title: Supplementary Material for: New Reference Values for Energy Intake

description: The reference values for energy intake of the German, Austrian and Swiss nutrition societies for children, adolescents and adults are derived using the factorial method. For adults, a mean BMI of 22 kg/m<sup>2</sup> is taken as a basis given the current mean body size for adults residing in Germany (taken from the German Health Interview and Examination Survey for Adults, DEGS1). The determination of the energy expenditure for infants is based on data obtained using the doubly labelled water (DLW) method. The energy storage in growing tissue will be added for the purpose of deriving reference values for this age group. For pregnant women, given an increase in body weight of 12 kg during pregnancy, guiding values for additional energy intake in the second trimester of 250 kcal/day and in the third trimester of 500 kcal/day are indicated using DLW data sets and taking energy storage in growing tissue into account. In case of overweight prior to pregnancy as well as in the case of reduced physical activity during pregnancy, the additional requirement is lower. For women exclusively breastfeeding during the first 4-6 months, the guiding value for additional energy intake is quoted as 500 kcal/day.
DOI: 10.6084/m9.figshare.5132020.v1
title: Supplementary Material for: Report of the Working Group ‘Overall Blood Supply Strategy with Regard to Variant Creutzfeldt-Jakob Disease (vCJD)’

description: Medicine
DOI: 10.6084/m9.figshare.5131963
title: Penultimate Glacial Maximum Ice Margins

description: <b>Penultimate Glacial Maximum (PGM) ice-sheet extents, mapping and dating information</b>:<br><br>This is a compilation of glacio-morphological mapping and dating of the penultimate glaciation in Eurasia and North America. We only include sites where the authors specifically correlate glacial sediments or features to the PGM, where this is either identified as MIS 6 or Saalian/Illinoian glacial episodes. <br><br>We include any dating constraints (OSL, U-series, tephra or palaeomagnetic) of PGM glacial deposits. Note we make no assessment as to the reliability of the ages. Relative age control for glacial sediments has been achieved using the stratigraphic position of the glacial deposits relative to interglacial deposits (e.g., U-series dated peats), tephra (e.g., the Old Crow tephra in North America provides an upper age limit for underlying glacial deposits) and palaeomagnetic excursions.<br><br><i><b>Supplement to</b></i>:<br>Rohling*, Hibbert*, Williams* et al., 2017. Differences between the last two glacial maxima and implications for ice-sheet, δ<sup>18</sup>O, and sea-level reconstructions. <i>Quaternary Science Reviews </i><br>https://doi.org/10.1016/j.quascirev.2017.09.009<br>(* = joint first authors) <br><br><br>
DOI: 10.6084/m9.figshare.5131861
title: Data from Adjusting to climate

description: A series of climate-relevant physiological traits measured in wild collected (F0) and lab-reared (F1) rainforest sunskinks (Lampropholis coggeri)<br>
DOI: 10.6084/m9.figshare.5131867
title: Supplementary figures in "interleukin-11 induces and maintains progenitors of different cell lineages during Xenopus tadpole tail regeneration"

description: High resolution images of Supplementary Fig. 1, 3-9, 11 in "interleukin-11 induces and maintains progenitors of different cell lineages during Xenopus tadpole tail regeneration"
DOI: 10.6084/m9.figshare.5131885
title: Requirements for trial registration and adherence to reporting guidelines in critical care journals: Analysis of the journals' instructions for authors

description: The first aim of this study is to investigate the policies of critical care journals on use of reporting guidelines. Our second aim is to investigate whether journals have requirements for clinical trial registration.
DOI: 10.6084/m9.figshare.5131852
title: Eucalyptus physiologic data 2015-16

description: Measurements of transpiration and photosynthetic rate collected from six species of <i>Eucalyptus</i> across four seasons, during a year of severe rainfall defect in the region of collection. Mature individuals were sampled <i>in situ</i>. Data collected by John Patykowski at Heathcote-Graytown National Park between March 2015 and January 2016.
DOI: 10.6084/m9.figshare.5131867.v2
title: Supplementary figures in "interleukin-11 induces and maintains progenitors of different cell lineages during Xenopus tadpole tail regeneration"

description: High resolution images of Supplementary Fig. 1, 3-9, 11 in "interleukin-11 induces and maintains progenitors of different cell lineages during Xenopus tadpole tail regeneration"
DOI: 10.6084/m9.figshare.5131885.v1
title: Requirements for trial registration and adherence to reporting guidelines in critical care journals: Analysis of the journals' instructions for authors

description: The first aim of this study is to investigate the policies of critical care journals on use of reporting guidelines. Our second aim is to investigate whether journals have requirements for clinical trial registration.
DOI: 10.6084/m9.figshare.5131840
title: Source data of Green's function and figure files.

description: In the article of "The role of electron-electron interactions in two dimensional Dirac fermions", we present the analysis of the unequal time Green's function to find the Fermi velocity according to the first excitation energy. This link provide both the source data of Green's function datGF.mat and the .fig files in the article. <br><br>This matlab data file includes the source data of unequal time Green's function for every parameters we simulated in projective quantum Monte Carlo. We study the fermionic model with the on-site Hubbard U and the long range Coulomb interaction \alpha on honeycomb lattice. \gamma is the ratio between on-site interaction and long-range Coulomb interaction. <br><br>The file contain a list of three levels. In the first level of the list, we classify the data according to the parameter \gamma, U and lattice size L. In second level, we list out all the Green's function (G_k(tau)=) of momentum k=(kx,ky) for both conduction band (c.b.) and valence band (v.b.). In our simulation, we find G(tau=0 to 10) in the imaginary time interval of 0.1. The Green function format is that the first column is tau label, the second column is the Green's function, and the third column is the error estimation of the Green's function. <br>For example, if we search the unequal time Green's function of valence band at the Dirac point (4.18,0) for \gamma=1.227, U=6.5 and lattice size L=15. We can access by datGF{437,6}{226,4}, which gives the Green's function and associated error in term of imaginary time. The Green's function here are calculated by averaging the data bins in converged Monte Carlo process.<br>Note:v2 - Typo corrected - Fig1_update.fig (originally Fig1.fig)v3 - Added the dataset of our reply to the comments to datGF_v3.mat, and the figure Reply_Figure_1.fig.
DOI: 10.6084/m9.figshare.5131852.v1
title: Eucalyptus physiologic data 2015-16

description: Measurements of transpiration and photosynthetic rate collected from six species of <i>Eucalyptus</i> across four seasons, during a year of severe rainfall defect in the region of collection. Mature individuals were sampled <i>in situ</i>. Data collected by John Patykowski at Heathcote-Graytown National Park between March 2015 and January 2016.
DOI: 10.6084/m9.figshare.5131813
title: Construction of FlgK and PilQ Mutant Strains for AmrZ Manuscript

description: PDF files that describe how a clean deletion of flgK (DBL1157) and allele swap of pilQ (DBL833) were created in Pseudomonas stutzeri DBL332
DOI: 10.6084/m9.figshare.5131810
title: Dataset for: Semiparametric Bayesian Analysis for Accelerated Failure Time Models with Cluster Structures

description: In this paper, we develop a Bayesian semiparametric accelerated failure time model for survival data with cluster structures. Our model allows distributional heterogeneity across clusters and accommodates their relationships through a density ratio approach. Moreover, a nonparametric mixture of Dirichlet processes prior is placed on the baseline distribution to yield full distributional flexibility. We illustrate through simulations that our model can greatly improve estimation accuracy by effectively pooling information from multiple clusters, while taking into account the heterogeneity in their random error distributions. We also demonstrate the implementation of our method using analysis of Mayo Clinic Trial in Primary Biliary Cirrhosis.
DOI: 10.6084/m9.figshare.5131840.v1
title: Source data of Green's function and figure files.

description: In the article of "The role of electron-electron interactions in two dimensional Dirac fermions", we present the analysis of the unequal time Green's function to find the Fermi velocity according to the first excitation energy. This link provide both the source data of Green's function datGF.mat and the .fig files in the article. <br><br>This matlab data file includes the source data of unequal time Green's function for every parameters we simulated in projective quantum Monte Carlo. We study the fermionic model with the on-site Hubbard U and the long range Coulomb interaction \alpha on honeycomb lattice. \gamma is the ratio between on-site interaction and long-range Coulomb interaction. <br><br>The file contain a list of three levels. In the first level of the list, we classify the data according to the parameter \gamma, U and lattice size L. In second level, we list out all the Green's function (G_k(tau)=) of momentum k=(kx,ky) for both conduction band (c.b.) and valence band (v.b.). In our simulation, we find G(tau=0 to 10) in the imaginary time interval of 0.1. The Green function format is that the first column is tau label, the second column is the Green's function, and the third column is the error estimation of the Green's function. <br>For example, if we search the unequal time Green's function of valence band at the Dirac point (4.18,0) for \gamma=1.227, U=6.5 and lattice size L=15. We can access by datGF{437,6}{226,4}, which gives the Green's function and associated error in term of imaginary time. The Green's function here are calculated by averaging the data bins in converged Monte Carlo process.
DOI: 10.6084/m9.figshare.5131810.v1
title: Dataset for: Semiparametric Bayesian Analysis for Accelerated Failure Time Models with Cluster Structures

description: In this paper, we develop a Bayesian semiparametric accelerated failure time model for survival data with cluster structures. Our model allows distributional heterogeneity across clusters and accommodates their relationships through a density ratio approach. Moreover, a nonparametric mixture of Dirichlet processes prior is placed on the baseline distribution to yield full distributional flexibility. We illustrate through simulations that our model can greatly improve estimation accuracy by effectively pooling information from multiple clusters, while taking into account the heterogeneity in their random error distributions. We also demonstrate the implementation of our method using analysis of Mayo Clinic Trial in Primary Biliary Cirrhosis.
DOI: 10.6084/m9.figshare.5131813.v1
title: Construction of FlgK and PilQ Mutant Strains for AmrZ Manuscript

description: PDF files that describe how a clean deletion of flgK (DBL1157) and allele swap of pilQ (DBL833) were created in Pseudomonas stutzeri DBL332
DOI: 10.6084/m9.figshare.5131807
title: Dataset for: A comparison of statistical methods for the study of etiologic heterogeneity

description: Cancer epidemiologic research has traditionally been guided by the premise that certain diseases share an underlying etiology, or cause. However, with the rise of molecular and genomic profiling, attention has increasingly focused on identifying subtypes of disease. As subtypes are identified, it is natural to ask the question of whether they share a common etiology or in fact arise from distinct sets of risk factors. In this context, epidemiologic questions of interest include 1) whether a risk factor of interest has the same effect across all subtypes of disease and 2) whether risk factor effects differ across levels of each individual tumor marker of which the subtypes are comprised. A number of statistical models have been proposed to address these questions. In an effort to determine the similarities and differences among the proposed methods, and to identify any advantages or disadvantages, we employ a simplified data example to elucidate the interpretation of model parameters and available hypothesis tests, and we perform a simulation study to assess bias in effect size, type I error, and power. The results show that when the number of tumor markers is small enough that the cross-classification of markers can be evaluated in the traditional polytomous logistic regression framework, then the statistical properties are at least as good as the more complex modeling approaches that have been proposed. The potential advantage of more complex methods is in the ability to accommodate multiple tumor markers in a model of reduced parametric dimension.
DOI: 10.6084/m9.figshare.5131840.v3
title: Source data of Green's function and figure files.

description: In the article of "The role of electron-electron interactions in two dimensional Dirac fermions", we present the analysis of the unequal time Green's function to find the Fermi velocity according to the first excitation energy. This link provide both the source data of Green's function datGF.mat and the .fig files in the article. <br><br>This matlab data file includes the source data of unequal time Green's function for every parameters we simulated in projective quantum Monte Carlo. We study the fermionic model with the on-site Hubbard U and the long range Coulomb interaction \alpha on honeycomb lattice. \gamma is the ratio between on-site interaction and long-range Coulomb interaction. <br><br>The file contain a list of three levels. In the first level of the list, we classify the data according to the parameter \gamma, U and lattice size L. In second level, we list out all the Green's function (G_k(tau)=) of momentum k=(kx,ky) for both conduction band (c.b.) and valence band (v.b.). In our simulation, we find G(tau=0 to 10) in the imaginary time interval of 0.1. The Green function format is that the first column is tau label, the second column is the Green's function, and the third column is the error estimation of the Green's function. <br>For example, if we search the unequal time Green's function of valence band at the Dirac point (4.18,0) for \gamma=1.227, U=6.5 and lattice size L=15. We can access by datGF{437,6}{226,4}, which gives the Green's function and associated error in term of imaginary time. The Green's function here are calculated by averaging the data bins in converged Monte Carlo process.<br>Note:v2 - Typo corrected - Fig1_update.fig (originally Fig1.fig)v3 - Added the dataset of our reply to the comments to datGF_v3.mat, and the figure Reply_Figure_1.fig.
DOI: 10.6084/m9.figshare.5131801
title: Lactate.sav

description: Data on lactate values obtained during the first 24 postoperative hours following major digestive surgery were collected. Patient demographic and clinical data, as well the data regarding their clinical outcomes are contained in the database.<br>
DOI: 10.6084/m9.figshare.5131807.v1
title: Dataset for: A comparison of statistical methods for the study of etiologic heterogeneity

description: Cancer epidemiologic research has traditionally been guided by the premise that certain diseases share an underlying etiology, or cause. However, with the rise of molecular and genomic profiling, attention has increasingly focused on identifying subtypes of disease. As subtypes are identified, it is natural to ask the question of whether they share a common etiology or in fact arise from distinct sets of risk factors. In this context, epidemiologic questions of interest include 1) whether a risk factor of interest has the same effect across all subtypes of disease and 2) whether risk factor effects differ across levels of each individual tumor marker of which the subtypes are comprised. A number of statistical models have been proposed to address these questions. In an effort to determine the similarities and differences among the proposed methods, and to identify any advantages or disadvantages, we employ a simplified data example to elucidate the interpretation of model parameters and available hypothesis tests, and we perform a simulation study to assess bias in effect size, type I error, and power. The results show that when the number of tumor markers is small enough that the cross-classification of markers can be evaluated in the traditional polytomous logistic regression framework, then the statistical properties are at least as good as the more complex modeling approaches that have been proposed. The potential advantage of more complex methods is in the ability to accommodate multiple tumor markers in a model of reduced parametric dimension.