cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zp9y28
title: Occurrence Download

description: A dataset containing 328 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chamaeleon comosus (Spreng.) Greuter"
 ]
}

 The dataset includes 328 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0125534-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mazamq
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "License is CC-BY-NC 4.0",
 "Issue is Coordinate rounded",
 "Geometry POLYGON((105.90271 -9.1021,114.43909 -9.1021,114.43909 -5.83462,105.90271 -5.83462,105.90271 -9.1021))",
 "HasCoordinate is true",
 "TaxonKey is Rhacophorus margaritifer (Schlegel, 1837)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 20 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002014-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.629pzh
title: Occurrence Download

description: A dataset containing 1074614 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Lauraceae)"
 ]
}

 The dataset includes 1074614 records from 2149 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038531-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xinzsn
title: Occurrence Download

description: A dataset containing 23753 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is United States of America",
 "Country is Mexico"
 ]
 },
 "TaxonKey is Lithobates catesbeianus (Shaw, 1802)"
 ]
}

 The dataset includes 23753 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015736-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f2bxae
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hymenostephium strigosum (Klatt) E.E.Schill. & Panero"
 ]
}

 The dataset includes 15 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0166048-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vkemyv
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isoetes pedersenii H.P.Fuchs ex E.I.Meza & Macluf"
 ]
}

 The dataset includes 47 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0166047-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6m2hsa
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Incaspiza ortizi J.T.Zimmer, 1952"
 ]
}

 The dataset's 1 records were derived from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042447-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bkew5h
title: Occurrence Download

description: A dataset containing 525 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Tamandua mexicana (Saussure, 1860)"
 ]
}

 The dataset includes 525 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037751-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.myuu7r
title: Occurrence Download

description: A dataset containing 77578 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fallopia japonica (Houtt.) Ronse Decr."
 ]
}

 The dataset includes 77578 records from 371 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015737-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mvnna9
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plethodon asupak Mead, Clayton, Nauman, Olson & Pfrender, 2005"
 ]
}

 The dataset includes 95 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042454-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f4moft
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Glyptothorax ventrolineatus Vishwanath & Linthoingambi, 2006",
 "Country is India"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015737-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mr4ke3
title: Occurrence Download

description: A dataset containing 185405 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Juglans regia L.)"
 ]
}

 The dataset includes 185405 records from 1495 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042451-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xpze5f
title: Occurrence Download

description: A dataset containing 24683 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gallinago media (Latham, 1787)"
 ]
}

 The dataset includes 24683 records from 208 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0389950-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7jtzb7
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Baccharis pilcensis F.H.Hellw."
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083591-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-32839
title: Minute book no. 3, PMU, 1922-1923

description: [description english/roman)] Pentecostal Missionary Union [PMU] minute book No. 3 including 30 pages of subject index; 515 pages of council meeting minutes; 17 blank pages at end of minute book.
DOI: 10.15468/dl.9q42nu
title: Occurrence Download

description: A dataset containing 1058 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-106.4852518999999944 31.7716789000000013, -106.4852518999999944 31.7742268999999986, -106.4852518999999944 31.7781647300000003, -106.4852518999999944 31.7807127300000012, -106.4852518999999944 31.7848821900000011, -106.4852518999999944 31.7904414700000011, -106.4852518999999944 31.7950741999999984, -106.4808323900000033 31.7950741999999984, -106.4775759000000050 31.7950741999999984, -106.4722259600000029 31.7950741999999984, -106.4664108099999993 31.7950741999999984, -106.4619912999999940 31.7950741999999984, -106.4619912999999940 31.7892832799999994, -106.4619912999999940 31.7834923700000012, -106.4619912999999940 31.7811759999999985, -106.4619912999999940 31.7760800000000003, -106.4619912999999940 31.7716789000000013, -106.4654803899999962 31.7716789000000013, -106.4719933599999990 31.7716789000000013, -106.4768780800000059 31.7716789000000013, -106.4799019600000065 31.7716789000000013, -106.4852518999999944 31.7716789000000013))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 1058 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0100822-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a8wv7r
title: Occurrence Download

description: A dataset listing the 65886 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((26.7542939189847 1.2186193716968,36.9991642472184 13.6345880476356,41.544901412726 10.038706409249,37.5419388341447 2.16847489881781,35.84576825 -7.80500813595271,36.2528491901947 -16.0144737632128,34.2174444892211 -16.5572483501391,27.5006089760084 -8.95840413317107,26.7542939189847 1.2186193716968))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 65886 records were derived from 1028 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0431390-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wtwvwt
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Baccharis potosiensis H.Rob."
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083602-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-32846
title: Minute book no. 3, PMU, 1922-1923

description: [description english/roman)] Pentecostal Missionary Union [PMU] minute book No. 3 including 30 pages of subject index; 515 pages of council meeting minutes; 17 blank pages at end of minute book.
DOI: 10.15468/dl.e44gtl
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Juniperus silicicola Small",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001805-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.puq4fj
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mesoclemmys hogei (Mertens, 1967)"
 ]
}

 The dataset includes 12 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0432471-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-32848
title: Minute book no. 3, PMU, 1922-1923

description: [description english/roman)] Pentecostal Missionary Union [PMU] minute book No. 3 including 30 pages of subject index; 515 pages of council meeting minutes; 17 blank pages at end of minute book.
DOI: 10.15468/dl.tg2nd4
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atropanthe sinensis (Hemsl.) Pascher"
 ]
}

 The dataset includes 109 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081713-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3hmpp5
title: Occurrence Download

description: A dataset containing 705 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pyrrhura orcesi Ridgely & Robbins, 1988"
 ]
}

 The dataset includes 705 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0433258-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g9e9dd
title: Occurrence Download

description: A dataset listing the 30635 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Switzerland",
 "Country is France",
 "Country is Germany",
 "Country is Italy",
 "Country is Liechtenstein",
 "Country is Austria"
 ]
 },
 {
 "or" : [
 "PublishingOrg is 593527a0-d2e9-4365-a583-cc683125dbb7",
 "PublishingOrg is 64ee55c9-570a-42af-b7da-3f13c6b4e5a9",
 "PublishingOrg is 1354d651-e529-4a8e-95be-faa807639461",
 "PublishingOrg is b64e06dc-d911-4664-a973-111e34b18773",
 "PublishingOrg is 43a26bbf-466a-4335-96cc-01d0656c614a",
 "PublishingOrg is 6505c875-003c-472d-879f-2624c00070e5",
 "PublishingOrg is 23539a57-1347-4dd3-af2a-cf9478563baa",
 "PublishingOrg is 605e7170-1123-11d9-8433-b8a03c50a862"
 ]
 }
 ]
}

 The dataset's 30635 records were derived from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0185826-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-236883
title: Annual women convention, Texas Southeast, COGIC (14: 1997) program

description: [description english/roman)] Program for the 14th Annual women convention, Texas Southeast Second Ecclesiastical Jurisdiction, Crouch memorial Church of God in Christ, Fort Worth, Texas, 1997 April 29 - May 2.
DOI: 10.15468/dl.6hse59
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agrilus grandiceps hemiphanes Marseul, 1866"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0433256-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hp94h3
title: Occurrence Download

description: A dataset containing 6133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Capsella rubella Reut."
 ]
}

 The dataset includes 6133 records from 178 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081670-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.344fxx
title: Occurrence Download

description: A dataset containing 1728 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Burramys parvus Broom, 1896"
 ]
}

 The dataset includes 1728 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0185853-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-236430
title: International District Missionaries Unit..., Church of God in Christ annual dinner program, 1995

description: [description english/roman)] International District Missionaries Unit and Jurisdictional Supervisors, Church of God in Christ annual dinner "Women of achievement" program, Cook Convention Center, Memphis, Tennessee, 1995 November 10.
DOI: 10.15468/dl.pm4hec
title: Occurrence Download

description: A dataset containing 694690 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus suber L."
 ]
}

 The dataset includes 694690 records from 401 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081684-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/ck7rb8
title: Bird skeletons in the modern Osteological Collections at the University Museum of Bergen

description: This dataset contains a list of all the bird skeletons, partial skeletons, and skulls in the modern Osteological Collections at the University Museum of Bergen in Bergen, Norway, and associated information such as provenance data and measurements (if available). The material has been collected between the late 19th century and now. The main geographical focus of the collection is Norway and Scandinavia, but the collection also contains specimens from other countries.
DOI: 10.5281/zenodo.13832664
title: Test dataset for omero-vitessce

description: Test datasets for omero-vitessce

Dataset designed for testing the omero-vitessce (https://github.com/NFDI4BIOIMAGE/omero-vitessce) plugin for OMERO (https://www.openmicroscopy.org/omero/). The omero-vitessce repository contains a cropped version of this dataset for automated testing (https://github.com/NFDI4BIOIMAGE/omero-vitessce/tree/main/test/data/MB266).

Files



MAX_MBEN_ff_Xenium_0018446_MB-266_DAPI_2024-01-23_12.47.34_Fused_405nm_corr_cropped.png = PNG image with the DAPI channel.

MAX_MBEN_ff_Xenium_0018446_MB-266_DAPI_2024-01-23_12.47.34_Fused_405nm_corr_cropped_cp_masks.png= Cell segmentation mask pixel values correspond to cell identities, 0 = background).

cells.csv = 

embeddings.csv = UMAP embeddings for drawing an interactive scatterplot.

feature_matrix.csv = Transcript counts in each cell.

transcripts.csv = Gene name and coordinates (pixel) of each transcript.

VitessceConfig.json = Example configuration file generated by the omero-vitessce plugin for the Vitessce, an equivalent file can be generated by using the form provided by the plugin in OMERO.web.


See the repository README file for more details on the formats of these files: https://github.com/NFDI4BIOIMAGE/omero-vitessce?tab=readme-ov-file#config-files

Usage



Add the omero-web-zarr and omero-vitessce plugins to your OMERO.web installation.

Import the images into OMERO in the same dataset.

Attach all the .csv data files.

Use the form in the "Vitessce" tab of the right-panel to generate a configuration file and open the Vitessce viewer.


See the repository README file for more details on usage (https://github.com/NFDI4BIOIMAGE/omero-vitessce?tab=readme-ov-file#usage) and installation (https://github.com/NFDI4BIOIMAGE/omero-vitessce?tab=readme-ov-file#installation)

Data Sources

Adapted from the full original data at: https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD1093 (10.6019/S-BIAD1093).

The original data were produced and analysed in the course of this study:

https://www.biorxiv.org/content/10.1101/2024.04.03.586404v1
DOI: 10.5517/cc985h6
title: CCDC 275977: Experimental Crystal Structure Determination

description: Related Article: V.A.Mamedov, I.Z.Nurkhametova, S.K.Kotovskaya, A.T.Gubaidullin, Ya.A.Levin, I.A.Litvinov, V.N.Charushin|2004|Izv.Akad.Nauk SSSR,Ser.Khim.||2462|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc985l9
title: CCDC 275980: Experimental Crystal Structure Determination

description: Related Article: P.G.Morozov, S.V.Kurbatov, F.M.Dolgushin, M.Yu.Antipin, L.P.Olekhnovich|2004|Izv.Akad.Nauk SSSR,Ser.Khim.||1990|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc98b51
title: CCDC 276122: Experimental Crystal Structure Determination

description: Related Article: V.V.Sharutin, I.V.Egorova, O.A.Dorofeeva, A.A.Molokov, G.K.Fukin|2004|Zh.Neorg.Khim.|49|1821|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.jqtafd
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CollectionKey is 354d3101-bb9f-4219-ab5b-9637308996bf",
 "TaxonKey is one of (Amphibia)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028224-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27095053
title: This data is used to explore the relationship between OSA and UI.xlsx

description: <pre>These data were downloaded from the NHANES database and filtered according to our inclusion and exclusion criteria as we explored the relationship between OSA and UI.</pre>
DOI: 10.6084/m9.figshare.27095053.v1
title: This data is used to explore the relationship between OSA and UI.xlsx

description: <pre>These data were downloaded from the NHANES database and filtered according to our inclusion and exclusion criteria as we explored the relationship between OSA and UI.</pre>
DOI: 10.15468/dl.yy2x45
title: Occurrence Download

description: A dataset containing 29870 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mentha spicata L."
 ]
}

 The dataset includes 29870 records from 958 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028222-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/kej2br
title: Mammal skeletons in the modern Osteological Collections at the University Museum of Bergen

description: This dataset contains a list of all the mammal skeletons, partial skeletons, and skulls in the modern Osteological Collections at the University Museum of Bergen in Bergen, Norway, and associated information such as provenance data and measurements (if available). The material has been collected between the late 19th century and now. The main geographical focus of the collection is Norway and Scandinavia, but the collection also contains specimens from other countries.
DOI: 10.15468/dl.j3bhhs
title: Occurrence Download

description: A dataset containing 16158 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bee Specimens from Michael Veit Collection"
 ]
}

 The dataset includes 16158 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028225-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.