cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.t8ec6v
title: Occurrence Download

description: A dataset containing 10087 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Otoba (A.DC.) H.Karst"
 ]
}

 The dataset includes 10087 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008897-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15468352
title: Stripped flea beetles on yellow sticky trap

description: This data set is taken and labeled after collecting stripped flea beetles in the farmland through yellow sticky trap.
DOI: 10.5281/zenodo.15468353
title: Stripped flea beetles on yellow sticky trap

description: This data set is taken and labeled after collecting stripped flea beetles in the farmland through yellow sticky trap.
DOI: 10.15468/dl.fv8rhv
title: Occurrence Download

description: A dataset containing 36196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Lappula, , , Lappula, Lappula, , , , , Lappula, , , , Lappulla, Lapula, , , , , Eupelmus)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 36196 records from 607 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019932-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.krsp7w
title: Occurrence Download

description: A dataset containing 36196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Lappula, , , Lappula, Lappula, , , , , Lappula, , , , Lappulla, Lapula, , , , , Eupelmus)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 36196 records from 607 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019931-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ppc43
title: Occurrence Download

description: A dataset containing 1902 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((5.10662 45.74278,5.10085 45.7605,5.07314 45.75849,5.06737 45.71297,5.07141 45.69039,5.102 45.68636,5.11643 45.71176,5.10662 45.74278))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2016-2026"
 ]
}

 The dataset includes 1902 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019933-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27238629.v1
title: Air temperature thresholds of extreme heat exposure for maize and soybean in Northern Hemisphere breadbaskets

description: code for paper "Air temperature thresholds of extreme heat exposure for maize and soybean in Northern Hemisphere breadbaskets" by Q.Zhao et al.
DOI: 10.5281/zenodo.18297948
title: Transcardial Perfusion Histological Color Intensity and Artifact Count.xlsx

description: Transcardial perfusion is widely used to preserve rodent brain tissue. However, varying parameters in protocols such as fixative volume and delivery technique remain unexplored, particularly its histological quality. This dataset compares histological quality from differently perfused rat brains, indicated by mean gray values to represent the staining intensity of the nucleus and cytoplasm as well as artifact count of each groups to evaluate the effects of volume and delivery technique to the histological quality of rat brain tissue.
DOI: 10.5281/zenodo.18297949
title: Transcardial Perfusion Histological Color Intensity and Artifact Count.xlsx

description: Transcardial perfusion is widely used to preserve rodent brain tissue. However, varying parameters in protocols such as fixative volume and delivery technique remain unexplored, particularly its histological quality. This dataset compares histological quality from differently perfused rat brains, indicated by mean gray values to represent the staining intensity of the nucleus and cytoplasm as well as artifact count of each groups to evaluate the effects of volume and delivery technique to the histological quality of rat brain tissue.
DOI: 10.15468/dl.urtqnx
title: Occurrence Download

description: A dataset containing 908 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bartonella",
 "Year 2015-2021"
 ]
}

 The dataset includes 908 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019938-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwt3se
title: Occurrence Download

description: A dataset containing 36196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Lappula, , , Lappula, Lappula, , , , , Lappula, , , , Lappulla, Lapula, , , , , Eupelmus)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 36196 records from 607 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019937-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.space.03009
title: Investigation of tin whisker growth behavior in COTS components under thermal vacuum cycling
title: Investigation of tin whisker growth behavior in COTS components under thermal vacuum cycling

description: Tin whisker growth in COTS components was studied under thermal vacuum and air cycling. Results show higher susceptibility in ceramic capacitors, stress-driven mechanisms as the main cause, and faster growth in vacuum due to thinner oxide films.
description: Tin whisker growth in COTS components was studied under thermal vacuum and air cycling. Results show higher susceptibility in ceramic capacitors, stress-driven mechanisms as the main cause, and faster growth in vacuum due to thinner oxide films.
DOI: 10.22002/d3a39-p7560
title: S. cerevisiae - 6210 + pAM21

description: Raw data files of S. cerevisiae - 6210 + pAM21
description: <strong>Tilt Series Date:</strong> 2016-09-24</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Babst Lab (Markus Babst and Akshay Moharir) - Provided strain with the plasmid transformed.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 6210 + pAM21(Vps36-V5-Strep in Ura plasmid). Grown to saturation overnight and cut back to 0.2 OD and grown until 0.6 OD. Media -> -URA YNB</p>
<strong>Sample Preparation:</strong> Pull down of P13 fraction using Dynabeads® M-280 Streptavidin from 5801D trial kit. B1 fraction (1st eluent of bound fraction - see Jensen Lab Protocols page 14).</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2016-09-24-3/rawdata/</p>MVB2_NS.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2016-09-24-3/rawdata/MVB2_NS.mrc"
        > <i class="download icon"></i> Download </a></p>

        MVB2_NS_DB.rec,  Reconstruction (Pixel Size 0.0 nm), 215.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2016-09-24-3/3dimage_81415/MVB2_NS_DB.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/y6fqp-8zz97
title: Coxiella_ Verocells_28dpi

description: Coxiella burnetii Nine Mile phase II clone 4 (NMIIC4) strain. Coxiella cells purified from infected Vero cells.
description: <strong>Tilt Series Date:</strong> 2017-09-25</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Coxiella burnetii</p>
<strong>Strain:</strong> Nine Mile phase II clone 4</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -7.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Robert Heinzen. Data collected and processed by Debnath Ghosal using Caltech tomography pipeline.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Refer to Heinzen lab.</p>
<strong>Sample Preparation:</strong> Freezing: 100% humidity, 4µl sample, Blot force 6, blot time 4 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.T</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-09-25-105/rawdata/</p>Cb_vero_201709250105.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-09-25-105/rawdata/Cb_vero_201709250105.mrc"
        > <i class="download icon"></i> Download </a></p>

        Cb_vero_201709250105_part61_5.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-09-25-105/3dimage_88585/Cb_vero_201709250105_part61_5.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/s1az5-69215
title: perfusion_dcrp_fixed

description: This sample was fixed with 2.5% glutaraldehyde for 1 hour. The cells look sick, the outer membrane looks bad. Fixing for 1 hour turns out to be bad,need to fix for lesser time.
description: <strong>Tilt Series Date:</strong> 2015-08-18</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Moh and Sahand</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The sample was grown in perfusion chamber and fixed for 1hour with 2.5% glutaraldehyde. Then washed 3 times in distilled water for 1 minute each. The sample was blotted in a manual plunger with 1ul gold beads.</p>
<strong>Sample Preparation:</strong> The ice was too thick in the squares for which LM images were available, so could not correlate. Took tomograms of all bugs in a square.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-08-18-56/rawdata/</p>perfusion_dcrp_atlas10057.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-08-18-56/rawdata/perfusion_dcrp_atlas10057.mrc"
        > <i class="download icon"></i> Download </a></p>

        perfusion_dcrp_atlas10057_full.rec,  Reconstruction (Pixel Size 2.4 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-08-18-56/3dimage_82787/perfusion_dcrp_atlas10057_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/hv8qj-jqr89
title: Coxiella_burnetii_ wtACCMD_pH4d5

description: Coxiella burnetii Nine Mile phase II clone 4 (NMIIC4) strain. Wild-type cells day-5 culture. Cells grown in acidic media ACCMD and pH 4.75
description: <strong>Tilt Series Date:</strong> 2017-10-17</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Coxiella burnetii</p>
<strong>Strain:</strong> Nine Mile phase II clone 4</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -7.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Robert Heinzen. Data collected and processed by Debnath Ghosal and Mohammed Kaplan using Caltech tomography pipeline.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in Robert Heinzen's lab @NIAID and ~50 ul cells were sent to us.</p>
<strong>Sample Preparation:</strong> Refer to Heinzen lab. Freezing: 100% humidity, 4µl sample, Blot force 6, blot time 4 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-10-17-63/rawdata/</p>Cb_d5pH4_20171017c0007.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-10-17-63/rawdata/Cb_d5pH4_20171017c0007.mrc"
        > <i class="download icon"></i> Download </a></p>

        Cb_d5pH4_20171017c0007_full.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-10-17-63/3dimage_89293/Cb_d5pH4_20171017c0007_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/nqy1r-4e502
title: Saccharomyces cerevisiae - 6210

description: Raw data files of Saccharomyces cerevisiae - 6210
description: <strong>Tilt Series Date:</strong> 2017-04-21</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Obtained from Dr. Markus Babst, University of Utah</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown overnight in YPD, diluted to 0.2 OD in the morning and allowed to grow till OD ~0.6.</p>
<strong>Sample Preparation:</strong> Cells were diluted to an OD of 0.2-0.25 in YPD, applied to the grid, blotted from behind manually and plunge frozen in liquid ethane-propane mix. ~200 nm lamellae were FIB milled before imaging by TEM.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-04-21-1/rawdata/</p>TS10_LamC.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-04-21-1/rawdata/TS10_LamC.mrc"
        > <i class="download icon"></i> Download </a></p>

        TS10_trunc_4bin_DB.rec,  Reconstruction (Pixel Size 0.0 nm), 333.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-04-21-1/3dimage_86274/TS10_trunc_4bin_DB.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.dcabnq
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dendrobium pseudotenellum"
 ]
}

 The dataset includes 11 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048632-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5k29dn
title: Occurrence Download

description: A dataset containing 620 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chinese Taipei",
 "OccurrenceStatus is Present",
 "TaxonKey is Calidris pygmaea"
 ]
}

 The dataset includes 620 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048634-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/zg9gv-h0e02
title: Coxiella_ Verocells_28dpi

description: Coxiella burnetii Nine Mile phase II clone 4 (NMIIC4) strain. Coxiella cells purified from infected Vero cells.
description: <strong>Tilt Series Date:</strong> 2017-10-19</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Coxiella burnetii</p>
<strong>Strain:</strong> Nine Mile phase II clone 4</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -7.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Robert Heinzen. Data collected and processed by Debnath Ghosal and Mohammed Kaplan using Caltech tomography pipeline.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Refer to Heinzen lab.</p>
<strong>Sample Preparation:</strong> Freezing: 100% humidity, 4µl sample, Blot force 6, blot time 4 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-10-19-92/rawdata/</p>Cb_vero_20171019b0089.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-10-19-92/rawdata/Cb_vero_20171019b0089.mrc"
        > <i class="download icon"></i> Download </a></p>

        Cb_vero_20171019b0089_part61_2.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-10-19-92/3dimage_89621/Cb_vero_20171019b0089_part61_2.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.4dkp8p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Herwigia Nielsen, 1972",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.9919 -21.4718,35.9648 -21.4413,35.9648 -24.1383,36.0558 -23.8719,35.9919 -21.4718))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009204-250525065834625/datasets/export for details.