cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1454499.v1
title: An Efficient Regeneration System and Optimization of the Transformation from the Cotyledonary Node of Jute (<i>Corchorus capsularis</i> L.)

description: The purpose of this study was to use cotyledonary nodes as explants to establish an efficient regeneration protocol for jute (<i>Corchorus capsularis</i> L.) on Murashige and Skoog (MS) basal medium. Research into the different growth regulators using the orthogonal design L16 (4<sup>5</sup>) revealed that the best shoot induction medium is MS medium containing 8% (w/v) agar and 3% (w/v) sucrose supplemented with 1.0 mg/L 6BA and 0.25 mg/L NAA. The average number of shoots per explant and the explant induction rate were 9.8 and 100%. After 3 weeks, 2–3 cm shoots were rooting on 1/2 MS medium containing 8% (w/v) agar and 3% (w/v) sucrose supplemented with 1.0 mg/L 6-BA + 0.2 mg/L NAA. Moreover, we optimized <i>Agrobacterium</i>-mediated transformation using the <i>GUS</i> gene transient expression system. The best condition for obtaining higher transformation rate consisted of the use of fresh explants to which 100 μM acetosyringone was added for a co-culture time of 10 min, the OD value of <i>Agrobacterium</i> liquid is 0.5 at 600 nm. These data provide an important basis for the application of other trait gene in the improvement of jute fiber quality.
DOI: 10.6084/m9.figshare.1454510.v1
title: Descriptive Statistics at Paper Level by Laureates and Non-Laureates

description: The data show that the Laureates (Phys or Medicine) accumulated many more citations per paper (times cited) than the non-Laureates, even with matched h-indexes. The data show no meaningful differences between the groups in the average number of authors per coauthored paper, the average number of nations per paper, or the percentage of international connections.
DOI: 10.6084/m9.figshare.1454509.v2
title: TTable 2: Descriptive Statistics at Paper Level by Laureates and Non-Laureates

description: In terms of numbers of publications, the Nobel Laureates (Phys or Medicine) produced on average significantly fewer papers over the course of their careers than the non-Laureates. Laureates also had fewer coauthors across their career. Further, the Nobel Laureates produced a significantly higher percentage of sole-authored papers than the non-Laureates both before and after winning the Nobel Prize (see also table 3). The two groups exhibited roughly identical percentages of papers where they appear as the first author or last author. To correct for the number of reviews or comments a NL writes as a consequence of winning the prize
DOI: 10.6084/m9.figshare.1454497
title: Occurrence, Species, and Organ Differences in Bioaccumulation Patterns of Phthalate Esters in Municipal Domestic Water Supply Lakes in Ibadan, Nigeria

description: The occurrence of phthalate esters (PE) was examined in biota, ambient water, and sediments of two man-made lakes (Asejire and Eleyele) in southwestern Nigeria. Five fish species (<i>Tilapia zillii, Hepsetus odoe, Parachanna obscura, Chrysichthys nigrodigitatus</i>, and <i>Mormyrus rume</i>) were analyzed for PE levels and used for calculating bioconcentration factors (BCF) and biota–sediment accumulation factors (BSAF). In addition, measured PE levels were thereafter used to calculate the phthalate pollution index (PPI) in biota and the environment. At both lakes, all sampled species had k-factor &gt; 1, showing apparently normal growth and health condition. Higher PE levels were found in sediments compared with water at both lakes, with a pattern showing that di(2-ethylhexyl) phthalate (DEHP) was predominant PE. While there were no unique patterns of PE concentrations in both lakes, differences were observed in organ concentration patterns that were evident at both lakes. For <i>T. zillii</i>, the BSAF was higher for dibutyl phthalate (DBP) compared to diethyl phthalate (DEP) and lowest for DEHP. The concentration pattern demonstrated that DBP concentrated more in gills (BCF: 6.7), while DEHP concentrated more in liver (BCF: 15.2) of <i>T. zillii</i> at Asejire. At Eleyele, <i>T. zillii</i> liver and gills concentrated less DEP and DEHP. The PPI value was significantly higher in sediment with respective values of 0.27 and 0.44 at Asejire and Eleyele lakes compared with water with respective values of 0.1 and 0.18 at Asejire and Eleyele lakes. Overall, our findings suggest a broader environmental and human health implication of high PE levels in these lakes, since they provide vast water volumes that are used for municipal domestic water supply. Further, these lakes support intense artisanal fisheries, representing significant sources of aquatic food resources for neighboring communities.
DOI: 10.6084/m9.figshare.1454498.v2
title: Photosynthetic and fatty acid acclimation of four phytoplankton species in response to light intensity and phosphorus availability

description: Photosynthetic acclimation of phytoplankton to lower irradiation can be met by several strategies such as increasing the affinity for light or increasing antenna size and stacking of the thylakoids. The latter is reflected by a higher proportion of polyunsaturated fatty acids (PUFAs). Additionally, photosynthetic capacity (P<sub>max</sub>), respiratory losses, and proton leakage can be reduced under low light. Here we consider the effect of light intensity and phosphorus availability simultaneously on the photosynthetic acclimation and fatty acid composition of four phytoplankters. We studied representatives of the Chlorophyceae, Cryptophyceae and Mediophyceae, all of which are important components of plankton communities in temperate lakes. In our analysis, excluding fatty acid composition, we found different acclimation strategies in the chlorophytes <i>Scenedesmus quadricauda, Chlamydomonas globosa</i>, cryptophyte <i>Cryptomonas ovata</i> and ochrophyte <i>Cyclotella meneghiniana</i>. We observed interactive effects of light and phosphorus conditions on photosynthetic capacity in <i>S. quadricauda</i> and <i>Cry. ovata. Cry. ovata</i> can be characterized as a low light-acclimated species, whereas <i>S. quadricauda</i> and <i>Cyc. meneghiniana</i> can cope best with a combination of high light intensities and low phosphorus supply. Principal component analyses (PCA), including fatty acid composition, showed further species-specific patterns in their regulation of P<sub>max</sub> with PUFAs and light. In <i>S. quadricauda</i> and <i>Cyc. meneghiniana</i>, PUFAs negatively affected the relationship between P<sub>max</sub> and light. In <i>Chl. globosa</i>, lower light coincided with higher PUFAs and lower P<sub>max</sub>, but PCA also indicated that PUFAs had no direct influence on P<sub>max</sub>. PUFAs and P<sub>max</sub> were unaffected by light in <i>Cry. ovata</i>. We did not observe a general trend in the four species tested and concluded that, in particular, the interactive effects highlight the importance of taking into account more than one environmental factor when assessing photosynthetic acclimation to lower irradiation.
DOI: 10.6084/m9.figshare.1454500.v1
title: Multiscale characterization of dislocation processes in Al 5754

description: Multiscale characterization was performed on an Al–Mg alloy, Al 5754 O-temper, including <i>in situ</i> mechanical deformation in both the scanning electron microscope and the transmission electron microscope. Scanning electron microscopy characterization showed corresponding inhomogeneity in the dislocation and Mg distribution, with higher levels of Mg correlating with elevated levels of dislocation density. At the nanoscale, <i>in situ</i> transmission electron microscopy straining experiments showed that dislocation propagation through the Al matrix is characterized by frequent interactions with obstacles smaller than the imaging resolution that resulted in the formation of dislocation debris in the form of dislocation loops. <i>Post</i>-<i>mortem</i> chemical characterization and comparison to dislocation loop behaviour in an Al–Cr alloy suggests that these obstacles are small Mg clusters. Previous theoretical work and indirect experimental evidence have suggested that these Mg nanoclusters are important factors contributing to strain instabilities in Al–Mg alloys. This study provides direct experimental characterization of the interaction of glissile dislocations with these nanoclusters and the stress needed for dislocations to overcome them.
DOI: 10.6084/m9.figshare.1454509.v4
title: Table 1: Descriptive Statistics at Author Level for Laureates and Non-Laureates

description: In terms of numbers of publications, the Nobel Laureates (Phys or Medicine) produced on average significantly fewer papers over the course of their careers than the non-Laureates. Laureates also had fewer coauthors across their career. Further, the Nobel Laureates produced a significantly higher percentage of sole-authored papers than the non-Laureates both before and after winning the Nobel Prize (see also table 3). The two groups exhibited roughly identical percentages of papers where they appear as the first author or last author. To correct for the number of reviews or comments a NL writes as a consequence of winning the prize
DOI: 10.6084/m9.figshare.1454497.v2
title: Occurrence, Species, and Organ Differences in Bioaccumulation Patterns of Phthalate Esters in Municipal Domestic Water Supply Lakes in Ibadan, Nigeria

description: The occurrence of phthalate esters (PE) was examined in biota, ambient water, and sediments of two man-made lakes (Asejire and Eleyele) in southwestern Nigeria. Five fish species (<i>Tilapia zillii, Hepsetus odoe, Parachanna obscura, Chrysichthys nigrodigitatus</i>, and <i>Mormyrus rume</i>) were analyzed for PE levels and used for calculating bioconcentration factors (BCF) and biota–sediment accumulation factors (BSAF). In addition, measured PE levels were thereafter used to calculate the phthalate pollution index (PPI) in biota and the environment. At both lakes, all sampled species had k-factor &gt; 1, showing apparently normal growth and health condition. Higher PE levels were found in sediments compared with water at both lakes, with a pattern showing that di(2-ethylhexyl) phthalate (DEHP) was predominant PE. While there were no unique patterns of PE concentrations in both lakes, differences were observed in organ concentration patterns that were evident at both lakes. For <i>T. zillii</i>, the BSAF was higher for dibutyl phthalate (DBP) compared to diethyl phthalate (DEP) and lowest for DEHP. The concentration pattern demonstrated that DBP concentrated more in gills (BCF: 6.7), while DEHP concentrated more in liver (BCF: 15.2) of <i>T. zillii</i> at Asejire. At Eleyele, <i>T. zillii</i> liver and gills concentrated less DEP and DEHP. The PPI value was significantly higher in sediment with respective values of 0.27 and 0.44 at Asejire and Eleyele lakes compared with water with respective values of 0.1 and 0.18 at Asejire and Eleyele lakes. Overall, our findings suggest a broader environmental and human health implication of high PE levels in these lakes, since they provide vast water volumes that are used for municipal domestic water supply. Further, these lakes support intense artisanal fisheries, representing significant sources of aquatic food resources for neighboring communities.
DOI: 10.6084/m9.figshare.1454498.v1
title: Photosynthetic and fatty acid acclimation of four phytoplankton species in response to light intensity and phosphorus availability

description: Photosynthetic acclimation of phytoplankton to lower irradiation can be met by several strategies such as increasing the affinity for light or increasing antenna size and stacking of the thylakoids. The latter is reflected by a higher proportion of polyunsaturated fatty acids (PUFAs). Additionally, photosynthetic capacity (P<sub>max</sub>), respiratory losses, and proton leakage can be reduced under low light. Here we consider the effect of light intensity and phosphorus availability simultaneously on the photosynthetic acclimation and fatty acid composition of four phytoplankters. We studied representatives of the Chlorophyceae, Cryptophyceae and Mediophyceae, all of which are important components of plankton communities in temperate lakes. In our analysis, excluding fatty acid composition, we found different acclimation strategies in the chlorophytes <i>Scenedesmus quadricauda, Chlamydomonas globosa</i>, cryptophyte <i>Cryptomonas ovata</i> and ochrophyte <i>Cyclotella meneghiniana</i>. We observed interactive effects of light and phosphorus conditions on photosynthetic capacity in <i>S. quadricauda</i> and <i>Cry. ovata. Cry. ovata</i> can be characterized as a low light-acclimated species, whereas <i>S. quadricauda</i> and <i>Cyc. meneghiniana</i> can cope best with a combination of high light intensities and low phosphorus supply. Principal component analyses (PCA), including fatty acid composition, showed further species-specific patterns in their regulation of P<sub>max</sub> with PUFAs and light. In <i>S. quadricauda</i> and <i>Cyc. meneghiniana</i>, PUFAs negatively affected the relationship between P<sub>max</sub> and light. In <i>Chl. globosa</i>, lower light coincided with higher PUFAs and lower P<sub>max</sub>, but PCA also indicated that PUFAs had no direct influence on P<sub>max</sub>. PUFAs and P<sub>max</sub> were unaffected by light in <i>Cry. ovata</i>. We did not observe a general trend in the four species tested and concluded that, in particular, the interactive effects highlight the importance of taking into account more than one environmental factor when assessing photosynthetic acclimation to lower irradiation.
DOI: 10.6084/m9.figshare.1454500.v3
title: Multiscale characterization of dislocation processes in Al 5754

description: Multiscale characterization was performed on an Al–Mg alloy, Al 5754 O-temper, including <i>in situ</i> mechanical deformation in both the scanning electron microscope and the transmission electron microscope. Scanning electron microscopy characterization showed corresponding inhomogeneity in the dislocation and Mg distribution, with higher levels of Mg correlating with elevated levels of dislocation density. At the nanoscale, <i>in situ</i> transmission electron microscopy straining experiments showed that dislocation propagation through the Al matrix is characterized by frequent interactions with obstacles smaller than the imaging resolution that resulted in the formation of dislocation debris in the form of dislocation loops. <i>Post</i>-<i>mortem</i> chemical characterization and comparison to dislocation loop behaviour in an Al–Cr alloy suggests that these obstacles are small Mg clusters. Previous theoretical work and indirect experimental evidence have suggested that these Mg nanoclusters are important factors contributing to strain instabilities in Al–Mg alloys. This study provides direct experimental characterization of the interaction of glissile dislocations with these nanoclusters and the stress needed for dislocations to overcome them.
DOI: 10.6084/m9.figshare.1454509.v3
title: Table 2: Descriptive Statistics at Paper Level by Laureates and Non-Laureates

description: In terms of numbers of publications, the Nobel Laureates (Phys or Medicine) produced on average significantly fewer papers over the course of their careers than the non-Laureates. Laureates also had fewer coauthors across their career. Further, the Nobel Laureates produced a significantly higher percentage of sole-authored papers than the non-Laureates both before and after winning the Nobel Prize (see also table 3). The two groups exhibited roughly identical percentages of papers where they appear as the first author or last author. To correct for the number of reviews or comments a NL writes as a consequence of winning the prize
DOI: 10.6084/m9.figshare.1454500.v2
title: Multiscale characterization of dislocation processes in Al 5754

description: Multiscale characterization was performed on an Al–Mg alloy, Al 5754 O-temper, including <i>in situ</i> mechanical deformation in both the scanning electron microscope and the transmission electron microscope. Scanning electron microscopy characterization showed corresponding inhomogeneity in the dislocation and Mg distribution, with higher levels of Mg correlating with elevated levels of dislocation density. At the nanoscale, <i>in situ</i> transmission electron microscopy straining experiments showed that dislocation propagation through the Al matrix is characterized by frequent interactions with obstacles smaller than the imaging resolution that resulted in the formation of dislocation debris in the form of dislocation loops. <i>Post</i>-<i>mortem</i> chemical characterization and comparison to dislocation loop behaviour in an Al–Cr alloy suggests that these obstacles are small Mg clusters. Previous theoretical work and indirect experimental evidence have suggested that these Mg nanoclusters are important factors contributing to strain instabilities in Al–Mg alloys. This study provides direct experimental characterization of the interaction of glissile dislocations with these nanoclusters and the stress needed for dislocations to overcome them.
DOI: 10.6084/m9.figshare.1454497.v1
title: Occurrence, Species, and Organ Differences in Bioaccumulation Patterns of Phthalate Esters in Municipal Domestic Water Supply Lakes in Ibadan, Nigeria

description: The occurrence of phthalate esters (PE) was examined in biota, ambient water, and sediments of two man-made lakes (Asejire and Eleyele) in southwestern Nigeria. Five fish species (<i>Tilapia zillii, Hepsetus odoe, Parachanna obscura, Chrysichthys nigrodigitatus</i>, and <i>Mormyrus rume</i>) were analyzed for PE levels and used for calculating bioconcentration factors (BCF) and biota–sediment accumulation factors (BSAF). In addition, measured PE levels were thereafter used to calculate the phthalate pollution index (PPI) in biota and the environment. At both lakes, all sampled species had k-factor &gt; 1, showing apparently normal growth and health condition. Higher PE levels were found in sediments compared with water at both lakes, with a pattern showing that di(2-ethylhexyl) phthalate (DEHP) was predominant PE. While there were no unique patterns of PE concentrations in both lakes, differences were observed in organ concentration patterns that were evident at both lakes. For <i>T. zillii</i>, the BSAF was higher for dibutyl phthalate (DBP) compared to diethyl phthalate (DEP) and lowest for DEHP. The concentration pattern demonstrated that DBP concentrated more in gills (BCF: 6.7), while DEHP concentrated more in liver (BCF: 15.2) of <i>T. zillii</i> at Asejire. At Eleyele, <i>T. zillii</i> liver and gills concentrated less DEP and DEHP. The PPI value was significantly higher in sediment with respective values of 0.27 and 0.44 at Asejire and Eleyele lakes compared with water with respective values of 0.1 and 0.18 at Asejire and Eleyele lakes. Overall, our findings suggest a broader environmental and human health implication of high PE levels in these lakes, since they provide vast water volumes that are used for municipal domestic water supply. Further, these lakes support intense artisanal fisheries, representing significant sources of aquatic food resources for neighboring communities.
DOI: 10.6084/m9.figshare.1454473
title: Wageningen University | On-line PhD records under embargo | @ 2/6/2015

description: Via Wageningen Yield.
DOI: 10.6084/m9.figshare.1454469
title: sweeney-2015-fig-5

description: Sample data for https://github.com/yannaodh/sweeney-2015 , Figure 5
DOI: 10.6084/m9.figshare.1454471
title: University of Luxembourg | Excluded open access on-line PhD records | @ 18/6/2015

description: Via Open Repository and Bibliography Luxembourg (ORBi lu).
DOI: 10.6084/m9.figshare.1454471.v1
title: University of Luxembourg | Excluded open access on-line PhD records | @ 18/6/2015

description: Via Open Repository and Bibliography Luxembourg (ORBi lu).
DOI: 10.6084/m9.figshare.1454473.v2
title: Wageningen University | On-line PhD records under embargo | @ 2/6/2015

description: Via Wageningen Yield.
DOI: 10.6084/m9.figshare.1454469.v1
title: sweeney-2015-fig-5

description: Sample data for https://github.com/yannaodh/sweeney-2015 , Figure 5
DOI: 10.6084/m9.figshare.1454473.v1
title: University of Wageningen | On-line PhD records under embargo | @ 2/6/2015

description: Via Wageningen Yield.
DOI: 10.6084/m9.figshare.1454455
title: sweeney-2015-fig-4

description: Sample data for https://github.com/yannaodh/sweeney-2015 , Figure 4
DOI: 10.6084/m9.figshare.1454450
title: sweeney-2015-fig-1

description: Sample data for https://github.com/yannaodh/sweeney-2015 , Figure 1
DOI: 10.6084/m9.figshare.1454450.v1
title: sweeney-2015-fig-1

description: Sample data for https://github.com/yannaodh/sweeney-2015 , Figure 1
DOI: 10.6084/m9.figshare.1454455.v1
title: sweeney-2015-fig-4

description: Sample data for https://github.com/yannaodh/sweeney-2015 , Figure 4
DOI: 10.6084/m9.figshare.1454445
title: Replication data for No Place to Call Home

description: NHIS 2011 data via IHIS system to replicate graph in Friedman, Saloner, Hsia. "No Place to Call Home" NEJM 2015.
DOI: 10.6084/m9.figshare.1454443
title: University of Luxembourg | Limited access on-line PhD thesis publications | @ 18/6/2015

description: Via Open Repository and Bibliography Luxembourg (ORBi lu).
DOI: 10.6084/m9.figshare.1454445.v1
title: Replication data for No Place to Call Home

description: NHIS 2011 data via IHIS system to replicate graph in Friedman, Saloner, Hsia. "No Place to Call Home" NEJM 2015.
DOI: 10.6084/m9.figshare.1454430
title: Taxon-rich multigene phylogeny of the photosynthetic euglenoids (Euglenophyceae)

description: Euglenoids RAxML Tree
DOI: 10.6084/m9.figshare.1454443.v2
title: University of Luxembourg | Limited access on-line PhD thesis publications | @ 18/6/2015

description: Via Open Repository and Bibliography Luxembourg (ORBi lu).
DOI: 10.6084/m9.figshare.1454430.v1
title: Taxon-rich multigene phylogeny of the photosynthetic euglenoids (Euglenophyceae)

description: Euglenoids RAxML Tree
DOI: 10.6084/m9.figshare.1454428
title: Taxon-rich multigene phylogeny of the photosynthetic euglenoids (Euglenophyceae)

description: Sequence Alignment of Euglenoids
DOI: 10.6084/m9.figshare.1454429
title: Taxon-rich multigene phylogeny of the photosynthetic euglenoids (Euglenophyceae)

description: Bayesian Tree of Euglenoids
DOI: 10.6084/m9.figshare.1454443.v1
title: University of Luxembourg | Limited access on-line PhD thesis publications | @ 18/6/2015

description: Via Open Repository and Bibliography Luxembourg (ORBi lu).
DOI: 10.6084/m9.figshare.1454428.v1
title: Taxon-rich multigene phylogeny of the photosynthetic euglenoids (Euglenophyceae)

description: Sequence Alignment of Euglenoids
DOI: 10.6084/m9.figshare.1454429.v1
title: Taxon-rich multigene phylogeny of the photosynthetic euglenoids (Euglenophyceae)

description: Bayesian Tree of Euglenoids
DOI: 10.6084/m9.figshare.1454420
title: Schmidt C, Weiss T, Lehmann T, Witte H, Leistritz L (2013): Extracting labeled topological patterns from samples of networks. PLoS ONE 8:e70497.

description: Effective connectivity network sample Schmidt C, Weiss T, Lehmann T, Witte H, Leistritz L (2013): Extracting labeled topological patterns from samples of networks. PLoS ONE 8:e70497. Schmidt C, Weiss T, Komusiewicz C, Witte H, Leistritz L (2012): An Analytical Approach to Network Motif Detection in Samples of Networks with Pairwise Different Vertex Labels 2012:1–12.