cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3562434
title: Supplement 1. Tab-delimited text file with all species present at sites and in the respective geographical species pools is available.

description: File List Kelt_et_al_Species_and_Pools.txt (MD5: b72cfc3fbf2b1062da57cba4c871368e) Description Kelt_et_al_Species_and_Pools.txt is a tab-delimited text file. This file contains the complete raw data used in macroecological assessment of potentially equivalent small mammal species at 401 local sites in North America (201 sites), South America (103 sites), and the Gobi Desert of Central Asia (97sites). Sites in the Gobi Desert are separated to 3 distinct regions, and as such are distinguished as Gobi-1, Gobi-2, and Gobi-3. Column definitions: Region = Geographic region - Gobi (1, 2, or 3), North America, South America. SiteNum = Reference to site number, numbered separately by Region. Species_Recorded = 6-letter codes for species recorded at the focal site. Enclosed in round brackets () for ease of review. 999 = no species recorded. Species abbreviations are in Appendix A. Species_Pool = 6-letter codes for species in the species pool for the focal site. Enclosed in round brackets () for ease of review. Species abbreviations are in Appendix A.
DOI: 10.6084/m9.figshare.3562434.v1
title: Supplement 1. Tab-delimited text file with all species present at sites and in the respective geographical species pools is available.

description: File List Kelt_et_al_Species_and_Pools.txt (MD5: b72cfc3fbf2b1062da57cba4c871368e) Description Kelt_et_al_Species_and_Pools.txt is a tab-delimited text file. This file contains the complete raw data used in macroecological assessment of potentially equivalent small mammal species at 401 local sites in North America (201 sites), South America (103 sites), and the Gobi Desert of Central Asia (97sites). Sites in the Gobi Desert are separated to 3 distinct regions, and as such are distinguished as Gobi-1, Gobi-2, and Gobi-3. Column definitions: Region = Geographic region - Gobi (1, 2, or 3), North America, South America. SiteNum = Reference to site number, numbered separately by Region. Species_Recorded = 6-letter codes for species recorded at the focal site. Enclosed in round brackets () for ease of review. 999 = no species recorded. Species abbreviations are in Appendix A. Species_Pool = 6-letter codes for species in the species pool for the focal site. Enclosed in round brackets () for ease of review. Species abbreviations are in Appendix A.
DOI: 10.6084/m9.figshare.3562431
title: Appendix A. Supplemental figures.

description: Supplemental figures.
DOI: 10.6084/m9.figshare.3562431.v1
title: Appendix A. Supplemental figures.

description: Supplemental figures.
DOI: 10.6084/m9.figshare.3562428
title: Appendix A. Additional figures and tables of experimental design, model selection results, and parameter estimates.

description: Additional figures and tables of experimental design, model selection results, and parameter estimates.
DOI: 10.6084/m9.figshare.3562428.v1
title: Appendix A. Additional figures and tables of experimental design, model selection results, and parameter estimates.

description: Additional figures and tables of experimental design, model selection results, and parameter estimates.
DOI: 10.6084/m9.figshare.3562425
title: Appendix A. Table with detailed information forest stands studied in western Montana, USA.

description: Table with detailed information forest stands studied in western Montana, USA.
DOI: 10.6084/m9.figshare.3562425.v1
title: Appendix A. Table with detailed information forest stands studied in western Montana, USA.

description: Table with detailed information forest stands studied in western Montana, USA.
DOI: 10.6084/m9.figshare.3562422
title: Appendix B. Taxonomic information for bird species examined in this study.

description: Taxonomic information for bird species examined in this study.
DOI: 10.6084/m9.figshare.3562422.v1
title: Appendix B. Taxonomic information for bird species examined in this study.

description: Taxonomic information for bird species examined in this study.
DOI: 10.6084/m9.figshare.3562419
title: Appendix C. Species-specific sample sizes of nests used in observational nest predation analyses.

description: Species-specific sample sizes of nests used in observational nest predation analyses.
DOI: 10.6084/m9.figshare.3562419.v1
title: Appendix C. Species-specific sample sizes of nests used in observational nest predation analyses.

description: Species-specific sample sizes of nests used in observational nest predation analyses.
DOI: 10.6084/m9.figshare.3562416
title: Appendix D. Detailed description of all methods used in this study.

description: Detailed description of all methods used in this study.
DOI: 10.6084/m9.figshare.3562416.v1
title: Appendix D. Detailed description of all methods used in this study.

description: Detailed description of all methods used in this study.
DOI: 10.6084/m9.figshare.3562413
title: Appendix E. Changes in density with both PC axes for bird species and combined nest predators.

description: Changes in density with both PC axes for bird species and combined nest predators.
DOI: 10.6084/m9.figshare.3562413.v1
title: Appendix E. Changes in density with both PC axes for bird species and combined nest predators.

description: Changes in density with both PC axes for bird species and combined nest predators.
DOI: 10.6084/m9.figshare.3562410
title: Appendix F. Changes in nest predation with both PC axes for bird species.

description: Changes in nest predation with both PC axes for bird species.
DOI: 10.6084/m9.figshare.3562410.v1
title: Appendix F. Changes in nest predation with both PC axes for bird species.

description: Changes in nest predation with both PC axes for bird species.
DOI: 10.6084/m9.figshare.3562407
title: Appendix G. Correlations between population density and nest predation rates for bird species.

description: Correlations between population density and nest predation rates for bird species.
DOI: 10.6084/m9.figshare.3562407.v1
title: Appendix G. Correlations between population density and nest predation rates for bird species.

description: Correlations between population density and nest predation rates for bird species.
DOI: 10.6084/m9.figshare.3562404
title: Appendix H. Conifer removal effects on densities of bird species and combined nest predators.

description: Conifer removal effects on densities of bird species and combined nest predators.
DOI: 10.6084/m9.figshare.3562404.v1
title: Appendix H. Conifer removal effects on densities of bird species and combined nest predators.

description: Conifer removal effects on densities of bird species and combined nest predators.
DOI: 10.6084/m9.figshare.3562401
title: Appendix I. Conifer removal effects on nest predation rates of bird species.

description: Conifer removal effects on nest predation rates of bird species.
DOI: 10.6084/m9.figshare.3562401.v1
title: Appendix I. Conifer removal effects on nest predation rates of bird species.

description: Conifer removal effects on nest predation rates of bird species.
DOI: 10.6084/m9.figshare.3562395
title: Appendix A. Field work details.

description: Field work details.
DOI: 10.6084/m9.figshare.3562395.v1
title: Appendix A. Field work details.

description: Field work details.
DOI: 10.6084/m9.figshare.3562392
title: Appendix B. Multi-event analyses details.

description: Multi-event analyses details.
DOI: 10.6084/m9.figshare.3562392.v1
title: Appendix B. Multi-event analyses details.

description: Multi-event analyses details.
DOI: 10.6084/m9.figshare.3562389
title: Supplement 1. A data set of capture histories of all resident, immigrant, and uncertain storks, a data set of capture histories of resident known-age storks, pattern files for the general model, and pattern files for the simplified model for known-age residents.

description: File List supplement SD1.txt (MD5: 44bcde1b37656e6158b5afc38787ab55) supplement SD2.txt (MD5: 5a54ed404b2119dc9307a9ed94d7b9a7) supplement SP1.txt (MD5: a229b07bcd0f1c7dd832af21dfe9c6c9) supplement SP2.txt (MD5: a005632d182c233204f0af3de78f6c94) Description supplement SD1.txt - Data set: capture histories of all resident, immigrant and uncertain storks. For using this file in E-Surge software, file extension must be changed to “.inp”. supplement SD2.txt - Data set: capture histories of resident known-age storks. For using this file in E-Surge software, file extension must be changed to “.inp”. supplement SP1.txt - Pattern files for the general model. For using this file in E-Surge software, format must be changed to “.pat”. supplement SP2.txt - Pattern files for the simplified model for known-age residents. For using this file in E-Surge software, file extension must be changed to “.pat”.
DOI: 10.6084/m9.figshare.3562389.v1
title: Supplement 1. A data set of capture histories of all resident, immigrant, and uncertain storks, a data set of capture histories of resident known-age storks, pattern files for the general model, and pattern files for the simplified model for known-age residents.

description: File List supplement SD1.txt (MD5: 44bcde1b37656e6158b5afc38787ab55) supplement SD2.txt (MD5: 5a54ed404b2119dc9307a9ed94d7b9a7) supplement SP1.txt (MD5: a229b07bcd0f1c7dd832af21dfe9c6c9) supplement SP2.txt (MD5: a005632d182c233204f0af3de78f6c94) Description supplement SD1.txt - Data set: capture histories of all resident, immigrant and uncertain storks. For using this file in E-Surge software, file extension must be changed to “.inp”. supplement SD2.txt - Data set: capture histories of resident known-age storks. For using this file in E-Surge software, file extension must be changed to “.inp”. supplement SP1.txt - Pattern files for the general model. For using this file in E-Surge software, format must be changed to “.pat”. supplement SP2.txt - Pattern files for the simplified model for known-age residents. For using this file in E-Surge software, file extension must be changed to “.pat”.
DOI: 10.6084/m9.figshare.3562386
title: Appendix A. Detailed description of the model.

description: Detailed description of the model.
DOI: 10.6084/m9.figshare.3562386.v1
title: Appendix A. Detailed description of the model.

description: Detailed description of the model.
DOI: 10.6084/m9.figshare.3562383
title: Appendix B. Simulation study results.

description: Simulation study results.
DOI: 10.6084/m9.figshare.3562383.v1
title: Appendix B. Simulation study results.

description: Simulation study results.
DOI: 10.6084/m9.figshare.3562380
title: Appendix C. Model selection steps.

description: Model selection steps.
DOI: 10.6084/m9.figshare.3562380.v1
title: Appendix C. Model selection steps.

description: Model selection steps.
DOI: 10.6084/m9.figshare.3562377
title: Supplement 1. R and C code used for the analysis of the great tits data set and for the simulation study presented in Appendix B.

description: File List AllFunctions.R (MD5: d3120c7372ab36b802dd9f0c01138f1a) Functions needed to fit the models presented in the paper. AllFits.R (MD5: f7caa2c394d6c710195c1bca762d1851) R code for fitting the models to the data set of great tits. Simulations.R (MD5: d3a8a230b93a10bc74420f6694b6e8b1) R code for performing the simulation study presented in Appendix B. PMdata.csv (MD5: 6fa6abb6c8240ba8eb0100c8031182ae) The data set of already marked female great tits. PUdata.csv (MD5: 19f72c2afdc3736b87c8956dd9c94a3e) The data set of previously unmarked female great tits. Effort.csv (MD5: 95b7da2637fd9b08b9818832e23cb7f5) Data on sampling effort. WithBreeding.dll MD5: ffe47405123db8b78289af44f4e050d3) The log-likelihood in compiled C code. C.zip (MD5: 9452e29327a86ce7bc2ab968bdd720dc) The original C code containing the log-likelihood. Description All of the functions needed to fit the models presented in the paper are in AllFunctions.R. The log-likelihood function is evaluated in C via R and is contained in the WithBreeding.dll file. The original C file is in the folder C.zip. The analysis of the great tits data set (PMdata.csv is the data set of already marked birds and PUdata.csv is the data set of previously unmarked birds) presented in the paper was performed using the functions in AllFits.R while the simulation study presented in Appendix B was performed using Simulations.R. Information on capture and resight effort (number of sites visited etc) is in effort.csv.
DOI: 10.6084/m9.figshare.3562377.v1
title: Supplement 1. R and C code used for the analysis of the great tits data set and for the simulation study presented in Appendix B.

description: File List AllFunctions.R (MD5: d3120c7372ab36b802dd9f0c01138f1a) Functions needed to fit the models presented in the paper. AllFits.R (MD5: f7caa2c394d6c710195c1bca762d1851) R code for fitting the models to the data set of great tits. Simulations.R (MD5: d3a8a230b93a10bc74420f6694b6e8b1) R code for performing the simulation study presented in Appendix B. PMdata.csv (MD5: 6fa6abb6c8240ba8eb0100c8031182ae) The data set of already marked female great tits. PUdata.csv (MD5: 19f72c2afdc3736b87c8956dd9c94a3e) The data set of previously unmarked female great tits. Effort.csv (MD5: 95b7da2637fd9b08b9818832e23cb7f5) Data on sampling effort. WithBreeding.dll MD5: ffe47405123db8b78289af44f4e050d3) The log-likelihood in compiled C code. C.zip (MD5: 9452e29327a86ce7bc2ab968bdd720dc) The original C code containing the log-likelihood. Description All of the functions needed to fit the models presented in the paper are in AllFunctions.R. The log-likelihood function is evaluated in C via R and is contained in the WithBreeding.dll file. The original C file is in the folder C.zip. The analysis of the great tits data set (PMdata.csv is the data set of already marked birds and PUdata.csv is the data set of previously unmarked birds) presented in the paper was performed using the functions in AllFits.R while the simulation study presented in Appendix B was performed using Simulations.R. Information on capture and resight effort (number of sites visited etc) is in effort.csv.
DOI: 10.6084/m9.figshare.3562374
title: Appendix A. Supplementary information about the distribution, selection, and proportional land cover of study sites and data on mark-recapture rates of the seven study species along the rural to urban gradient in greater Washington, D.C., USA.

description: Supplementary information about the distribution, selection, and proportional land cover of study sites and data on mark-recapture rates of the seven study species along the rural to urban gradient in greater Washington, D.C., USA.
DOI: 10.6084/m9.figshare.3562371
title: Appendix B. Supplementary results including CARW model tables for time dependent survival and model results for the effect of citizen scientists on detectability.

description: Supplementary results including CARW model tables for time dependent survival and model results for the effect of citizen scientists on detectability.
DOI: 10.6084/m9.figshare.3562368
title: Appendix A. Estimated cotton aphid abundance (mean +/- SE) on cotton in high-aphid density and low-aphid density experimental treatment groups.

description: Estimated cotton aphid abundance (mean +/- SE) on cotton in high-aphid density and low-aphid density experimental treatment groups.
DOI: 10.6084/m9.figshare.3562368.v1
title: Appendix A. Estimated cotton aphid abundance (mean +/- SE) on cotton in high-aphid density and low-aphid density experimental treatment groups.

description: Estimated cotton aphid abundance (mean +/- SE) on cotton in high-aphid density and low-aphid density experimental treatment groups.
DOI: 10.6084/m9.figshare.3562365
title: Appendix B. The amount of plant biomass (mean +/- SE) produced by plants in high-density and low-density aphid groups in 2011. (ANOVA F1,78 = 0.289, p = 0.592).

description: The amount of plant biomass (mean +/- SE) produced by plants in high-density and low-density aphid groups in 2011. (ANOVA F1,78 = 0.289, p = 0.592).
DOI: 10.6084/m9.figshare.3562365.v1
title: Appendix B. The amount of plant biomass (mean +/- SE) produced by plants in high-density and low-density aphid groups in 2011. (ANOVA F1,78 = 0.289, p = 0.592).

description: The amount of plant biomass (mean +/- SE) produced by plants in high-density and low-density aphid groups in 2011. (ANOVA F1,78 = 0.289, p = 0.592).
DOI: 10.6084/m9.figshare.3562362
title: Appendix C. The relationship between aphid abundance and (a) number of seeds and (b) mass per seed produced by hand cross-pollinated plants under greenhouse conditions. Closed circles are plants in the high aphid density treatment, open circles are plants in the low aphid density treatment.

description: The relationship between aphid abundance and (a) number of seeds and (b) mass per seed produced by hand cross-pollinated plants under greenhouse conditions. Closed circles are plants in the high aphid density treatment, open circles are plants in the low aphid density treatment.
DOI: 10.6084/m9.figshare.3562362.v1
title: Appendix C. The relationship between aphid abundance and (a) number of seeds and (b) mass per seed produced by hand cross-pollinated plants under greenhouse conditions. Closed circles are plants in the high aphid density treatment, open circles are plants in the low aphid density treatment.

description: The relationship between aphid abundance and (a) number of seeds and (b) mass per seed produced by hand cross-pollinated plants under greenhouse conditions. Closed circles are plants in the high aphid density treatment, open circles are plants in the low aphid density treatment.
DOI: 10.6084/m9.figshare.3562359
title: Supplement 1. R script files that were used to conduct the analyses and generate each figure.

description: File List Supp_1.R (MD5: 8643fbc7408207774940679a858a3669 ) Description Because of the underlying error distribution, we used a generalized linear model with a Poisson link function to analyze the data on which this paper is based. As is clear in Supp_1.R, the analyses for Fig. 1 and Fig. 3 were performed for each year separately. The R scripts also calculate Efron's pseudo-R2. Supp_1.R also shows the analysis used in Fig. 2, where all years of pollinator data were pooled.
DOI: 10.6084/m9.figshare.3562356
title: Appendix A. Photographs of experimental plots.

description: Photographs of experimental plots.
DOI: 10.6084/m9.figshare.3562353
title: Appendix B. Biomass distributions of dung beetle species.

description: Biomass distributions of dung beetle species.
DOI: 10.6084/m9.figshare.3562356.v1
title: Appendix A. Photographs of experimental plots.

description: Photographs of experimental plots.
DOI: 10.6084/m9.figshare.3562353.v1
title: Appendix B. Biomass distributions of dung beetle species.

description: Biomass distributions of dung beetle species.
DOI: 10.6084/m9.figshare.3562350
title: Appendix C. Species abundances, median trait values, and categorical traits.

description: Species abundances, median trait values, and categorical traits.
DOI: 10.6084/m9.figshare.3562350.v1
title: Appendix C. Species abundances, median trait values, and categorical traits.

description: Species abundances, median trait values, and categorical traits.
DOI: 10.6084/m9.figshare.3562347
title: Appendix D. Unrecovered seed information and calculation of seed dispersion.

description: Unrecovered seed information and calculation of seed dispersion.
DOI: 10.6084/m9.figshare.3562344
title: Appendix E. Associations between dung beetle community attributes.

description: Associations between dung beetle community attributes.
DOI: 10.6084/m9.figshare.3562347.v1
title: Appendix D. Unrecovered seed information and calculation of seed dispersion.

description: Unrecovered seed information and calculation of seed dispersion.
DOI: 10.6084/m9.figshare.3562344.v1
title: Appendix E. Associations between dung beetle community attributes.

description: Associations between dung beetle community attributes.
DOI: 10.6084/m9.figshare.3562341
title: Appendix F. The effect of community manipulation and site on dung beetle community attributes.

description: The effect of community manipulation and site on dung beetle community attributes.
DOI: 10.6084/m9.figshare.3562341.v1
title: Appendix F. The effect of community manipulation and site on dung beetle community attributes.

description: The effect of community manipulation and site on dung beetle community attributes.
DOI: 10.6084/m9.figshare.3562338
title: Appendix G. The effect of experimental site on seed dispersion.

description: The effect of experimental site on seed dispersion.
DOI: 10.6084/m9.figshare.3562338.v1
title: Appendix G. The effect of experimental site on seed dispersion.

description: The effect of experimental site on seed dispersion.
DOI: 10.6084/m9.figshare.3562335
title: Appendix A. Characterization of the ashes and Pi and Pt related to mass after burning of Bray and Olsen P as well as Bray Pi and Pt related to mass prior to burning.

description: Characterization of the ashes and Pi and Pt related to mass after burning of Bray and Olsen P as well as Bray Pi and Pt related to mass prior to burning.
DOI: 10.6084/m9.figshare.3562335.v1
title: Appendix A. Characterization of the ashes and Pi and Pt related to mass after burning of Bray and Olsen P as well as Bray Pi and Pt related to mass prior to burning.

description: Characterization of the ashes and Pi and Pt related to mass after burning of Bray and Olsen P as well as Bray Pi and Pt related to mass prior to burning.
DOI: 10.6084/m9.figshare.3562332
title: Appendix A. Supplementary study site information, including photograph of study area and detailed description of forage resource availability methodology and results for Konza Prairie Biological Station, near Manhattan, Kansas, USA.

description: Supplementary study site information, including photograph of study area and detailed description of forage resource availability methodology and results for Konza Prairie Biological Station, near Manhattan, Kansas, USA.
DOI: 10.6084/m9.figshare.3562332.v1
title: Appendix A. Supplementary study site information, including photograph of study area and detailed description of forage resource availability methodology and results for Konza Prairie Biological Station, near Manhattan, Kansas, USA.

description: Supplementary study site information, including photograph of study area and detailed description of forage resource availability methodology and results for Konza Prairie Biological Station, near Manhattan, Kansas, USA.
DOI: 10.6084/m9.figshare.3562329
title: Appendix B. Supplementary methods and results: non-fire related foraging behavior and recent grazing activity index at Konza Prairie Biological Station, Manhattan, Kansas, USA 2012–2013.

description: Supplementary methods and results: non-fire related foraging behavior and recent grazing activity index at Konza Prairie Biological Station, Manhattan, Kansas, USA 2012–2013.
DOI: 10.6084/m9.figshare.3562329.v1
title: Appendix B. Supplementary methods and results: non-fire related foraging behavior and recent grazing activity index at Konza Prairie Biological Station, Manhattan, Kansas, USA 2012–2013.

description: Supplementary methods and results: non-fire related foraging behavior and recent grazing activity index at Konza Prairie Biological Station, Manhattan, Kansas, USA 2012–2013.
DOI: 10.6084/m9.figshare.3562326
title: Appendix A. Location of the study sites.

description: Location of the study sites.
DOI: 10.6084/m9.figshare.3562323
title: Appendix B. Characteristics of pyrogenic carbon (PyC) from the six fire severity classes.

description: Characteristics of pyrogenic carbon (PyC) from the six fire severity classes.
DOI: 10.6084/m9.figshare.3562323.v1
title: Appendix B. Characteristics of pyrogenic carbon (PyC) from the six fire severity classes.

description: Characteristics of pyrogenic carbon (PyC) from the six fire severity classes.
DOI: 10.6084/m9.figshare.3562320
title: Appendix C. Comparison of 13C NMR spectra for the field pyrogenic carbon.

description: Comparison of 13C NMR spectra for the field pyrogenic carbon.
DOI: 10.6084/m9.figshare.3562320.v1
title: Appendix C. Comparison of 13C NMR spectra for the field pyrogenic carbon.

description: Comparison of 13C NMR spectra for the field pyrogenic carbon.