cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5tx35g93
title: MassIVE MSV000091383 - An ex vivo human precision-cut lung slice platform provides insight into SARS-CoV-2 pathogenesis and for evaluating antiviral drugs
title: COVID-19 has claimed millions of lives since the emergence of SARS-CoV-2, and lung disease appears the primary cause of the deaths in COVID-19 patients. However, the underlying mechanisms of COVID-19 pathogenesis remain elusive and there is no existing model where the disease can be faithfully recapitulated and conditions for the infection process can be experimentally controlled. Herein we report the establishment of an ex vivo human precision-cut lung slice (hPCLS) platform for studying SARS-CoV-2 pathogenicity and innate immune response, and for evaluating the efficacy of antiviral drugs against SARS-CoV-2. We show that while SARS-CoV-2 continued to replicate during the course of infection, infectious virus production peaked within 2 days, and rapidly declined thereafter. Although most proinflammatory cytokines examined were induced by SARS-CoV-2 infection, the degree of induction and types of cytokines varied significantly among hPCLS from individual donors, which might reflect the heterogeneity of human populations. In particular, two cytokines (IL-8 and IP-10) are highly and consistently induced, suggesting a role in the pathogenesis of COVID-19. Histopathological examination reveals focal cytopathic effects late in the infection, which are largely limited to type II alveolar cells. Transcriptomic and proteomic analyses identified molecular signatures and cellular pathways that are largely consistent with the progression of COVID-19 in patients. Furthermore, we show that homoherringtonine, a natural plant alkaloid derived from Cephalotoxus fortunei, not only inhibited virus replication but also inflammatory cytokines, and ameliorated the histopathological changes of the lungs caused by SARS-CoV-2, demonstrating the usefulness of the hPCLS platform for evaluating antiviral drugs.
DOI: 10.5281/zenodo.7667514
title: Electronic Supplement / Data Archive for "Global Variations in the Time Delays Between Polar Ionospheric Heating and the Neutral Density Response"

description: These files provide supplemental data to accompany the paper "Global Variations in the Time Delays Between Polar Ionospheric Heating and the Neutral Density Response" submitted to AGU journal <em>Space Weather</em>, with manuscript number 2022SW003410. Details are provided in the file <strong>ReadMe_DataArchive.pdf</strong>.<br>
DOI: 10.5281/zenodo.7667515
title: Electronic Supplement / Data Archive for "Global Variations in the Time Delays Between Polar Ionospheric Heating and the Neutral Density Response"

description: These files provide supplemental data to accompany the paper "Global Variations in the Time Delays Between Polar Ionospheric Heating and the Neutral Density Response" submitted to AGU journal <em>Space Weather</em>, with manuscript number 2022SW003410. Details are provided in the file <strong>ReadMe_DataArchive.pdf</strong>.<br>
DOI: 10.21954/ou.rd.22040289
title: RAW_SmallRingTensileTest_StainlessSteel316L_ExtensionRate2_6667mmMin

description: This is a part of the test dataset (Digital Image Correlation Images and CSV data) that describes the experiments done at The Open University for the Small Ring Tensile Testing of SS316L performed at various displacement rates. Unprocessed images (.NEF format) start with the prefix 'RAW' while processed images (.TIF format) start with the prefix 'CLEAN'. The following letters after that describe the test type (Small Ring Test or Uniaxial Test), followed by the material. Lastly, after the material, the crosshead extension rate is described. For instance, 'Extension Rate0_3mmMin' refers to an extension rate of 0.3 mm/min and so on. The 'RAW' folders also contain the unprocessed CSV files. The 'CLEAN' folders contain the camera information (capture interval, ISO, etc) as well as the denoised CSV experimental files. The CSV files are denoised with the help of a Butterworth filter.
DOI: 10.21954/ou.rd.22040289.v1
title: RAW_SmallRingTensileTest_StainlessSteel316L_ExtensionRate2_6667mmMin

description: This is a part of the test dataset (Digital Image Correlation Images and CSV data) that describes the experiments done at The Open University for the Small Ring Tensile Testing of SS316L performed at various displacement rates. Unprocessed images (.NEF format) start with the prefix 'RAW' while processed images (.TIF format) start with the prefix 'CLEAN'. The following letters after that describe the test type (Small Ring Test or Uniaxial Test), followed by the material. Lastly, after the material, the crosshead extension rate is described. For instance, 'Extension Rate0_3mmMin' refers to an extension rate of 0.3 mm/min and so on. The 'RAW' folders also contain the unprocessed CSV files. The 'CLEAN' folders contain the camera information (capture interval, ISO, etc) as well as the denoised CSV experimental files. The CSV files are denoised with the help of a Butterworth filter.
DOI: 10.21954/ou.rd.22040477
title: RAW_SmallRingTensileTest_StainlessSteel316L_ExtensionRate3_0mmMin

description: This is a part of the test dataset (Digital Image Correlation Images and CSV data) that describes the experiments done at The Open University for the Small Ring Tensile Testing of SS316L performed at various displacement rates. Unprocessed images (.NEF format) start with the prefix 'RAW' while processed images (.TIF format) start with the prefix 'CLEAN'. The following letters after that describe the test type (Small Ring Test or Uniaxial Test), followed by the material. Lastly, after the material, the crosshead extension rate is described. For instance, 'Extension Rate0_3mmMin' refers to an extension rate of 0.3 mm/min and so on. The 'RAW' folders also contain the unprocessed CSV files. The 'CLEAN' folders contain the camera information (capture interval, ISO, etc) as well as the denoised CSV experimental files. The CSV files are denoised with the help of a Butterworth filter.
DOI: 10.21954/ou.rd.22040477.v1
title: RAW_SmallRingTensileTest_StainlessSteel316L_ExtensionRate3_0mmMin

description: This is a part of the test dataset (Digital Image Correlation Images and CSV data) that describes the experiments done at The Open University for the Small Ring Tensile Testing of SS316L performed at various displacement rates. Unprocessed images (.NEF format) start with the prefix 'RAW' while processed images (.TIF format) start with the prefix 'CLEAN'. The following letters after that describe the test type (Small Ring Test or Uniaxial Test), followed by the material. Lastly, after the material, the crosshead extension rate is described. For instance, 'Extension Rate0_3mmMin' refers to an extension rate of 0.3 mm/min and so on. The 'RAW' folders also contain the unprocessed CSV files. The 'CLEAN' folders contain the camera information (capture interval, ISO, etc) as well as the denoised CSV experimental files. The CSV files are denoised with the help of a Butterworth filter.
DOI: 10.6084/m9.figshare.22194115
title: Differentially expressed genes in response to PM10

description: Differentially expressed genes in response to PM10
DOI: 10.21227/7zt0-jr59
title: Data of a microgrid

description: This is a data set of a microgrid.
DOI: 10.34740/kaggle/ds/2954657
title: AdultoMayor_4_fc
DOI: 10.5281/zenodo.7688679
title: Data Availability for "The RNA-binding protein landscapes differ between mammalian organs and cultured cells"

description: Data Availability for "The RNA-binding protein landscapes differ between mammalian organs and cultured cells" Joel I. Perez-Perri, Dunja Ferring-Appel, Ina Huppertz, Thomas Schwarzl, Sudeep Sahadevan, Frank Stein, Mandy Rettel, Bruno Galy, and Matthias W. Hentze
DOI: 10.5281/zenodo.7688678
title: Data Availability for "The RNA-binding protein landscapes differ between mammalian organs and cultured cells"

description: Data Availability for "The RNA-binding protein landscapes differ between mammalian organs and cultured cells" Joel I. Perez-Perri, Dunja Ferring-Appel, Ina Huppertz, Thomas Schwarzl, Sudeep Sahadevan, Frank Stein, Mandy Rettel, Bruno Galy, and Matthias W. Hentze
DOI: 10.6084/m9.figshare.21130136
title: Toward Feeds for Circular Multitrophic Food Production Systems: Holistically Evaluating Growth Performance and Nutrient Excretion of African Catfish Fed Fish Meal-Free Diets in Comparison to Nile Tilapia

description: Data sets underlying the results presented in the publication.
DOI: 10.6084/m9.figshare.21130136.v1
title: Holistically evaluating fish meal-free diets for circular multi-trophic food production systems: Growth performance and nu-trient excretion of African catfish in comparison to Nile tilapia

description: Data sets underlying the results presented in the publication.
DOI: 10.6084/m9.figshare.19207902
title: Fish Feeds in Aquaponics and Beyond: A Novel Concept to Evaluate Protein Sources in Diets for Circular Multitrophic Food Production Systems

description: Data sets (SPSS) underlying the analyses presented in the paper "Specialized fish feeds in aquaponics and beyond: A novel con-cept for diet formulation in support of nutrient recycling in in-tegrated multitrophic food production systems (IMTFPS)"
DOI: 10.6084/m9.figshare.19207902.v2
title: Fish Feeds in Aquaponics and Beyond: A Novel Concept to Evaluate Protein Sources in Diets for Circular Multitrophic Food Production Systems

description: Data sets (SPSS) underlying the analyses presented in the paper "Specialized fish feeds in aquaponics and beyond: A novel con-cept for diet formulation in support of nutrient recycling in in-tegrated multitrophic food production systems (IMTFPS)"
DOI: 10.6084/m9.figshare.19207902.v1
title: Specialized fish feeds in aquaponics and beyond: A novel concept for diet formulation in support of nutrient recycling in integrated multitrophic food production systems (IMTFPS)

description: Data sets (SPSS) underlying the analyses presented in the paper "Specialized fish feeds in aquaponics and beyond: A novel con-cept for diet formulation in support of nutrient recycling in in-tegrated multitrophic food production systems (IMTFPS)"
DOI: 10.25318/42250002-eng
title: Survey on Before and After School Care in Canada: Public Use Microdata File

description: This public use microdata file (PUMF) contains non-aggregated data for a wide variety of variables collected from the Survey on Before and After School Care in Canada (SBASCC). SBASCC addresses child care in Canada for children who are attending school (i.e., ages 4 to 12). The survey will ask about the different types of learning and child care arrangements used by families, difficulties some families may face when looking for care, as well as reasons for not using child care. Please note that children under 6 are not included on this PUMF. These data are available through the masterfile or the Survey on Early Learning and Child Care Arrangements (SELCCA) PUMF.
DOI: 10.5281/zenodo.6956995
title: Africa Valley Experiments MetUM

description: Data for MetUM model experiments which edit East African Rift System geomorphology. Associated with publication: 'Valley formation aridifies East Africa and elevates Congo Basin Rainfall'. Please contact callum.munday (at) ouce.ox.ac.uk for questions on data.
DOI: 10.5281/zenodo.6956994
title: Africa Valley Experiments MetUM

description: Data for MetUM model experiments which edit East African Rift System geomorphology. Associated with publication: 'Valley formation aridifies East Africa and elevates Congo Basin Rainfall'. Please contact callum.munday (at) ouce.ox.ac.uk for questions on data.
DOI: 10.5517/ccdc.csd.cc24k3mg
title: CCDC 1982655: Experimental Crystal Structure Determination

description: Related Article: Mahesh S Kutwal,  Venkata M. D. Padmaja,  Chandrakumar Appayee|2020|Eur.J.Org.Chem.|2020|2720|doi:10.1002/ejoc.202000245
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27w35f
title: CCDC 2081624: Experimental Crystal Structure Determination

description: Related Article: Er-Meng Han, Wei-Dong Yu, Bo Wang, Jun Yan, Xiao-Yi Yi, Chao Liu|2022|Inorg.Chem.|61|2903|doi:10.1021/acs.inorgchem.1c03626
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27w36g
title: CCDC 2081625: Experimental Crystal Structure Determination

description: Related Article: Er-Meng Han, Wei-Dong Yu, Bo Wang, Jun Yan, Xiao-Yi Yi, Chao Liu|2022|Inorg.Chem.|61|2903|doi:10.1021/acs.inorgchem.1c03626
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dmkvg
title: CCDC 2223346: Experimental Crystal Structure Determination

description: Related Article: Cornelis H. M. van der Loo, Rutger Schim van der Loeff, Avelino Martín, Pilar Gomez-Sal, Mark L. G. Borst, Kees Pouwer, Adriaan J. Minnaard|2023|Org.Biomol.Chem.|21|1888|doi:10.1039/D2OB02221D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dz5td
title: CCDC 2233544: Experimental Crystal Structure Determination

description: Related Article: Meher Prakash, Sampak Samanta|2023|Org.Biomol.Chem.|21|2001|doi:10.1039/D3OB00077J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f4wr7
title: CCDC 2239029: Experimental Crystal Structure Determination

description: Related Article: Meher Prakash, Sampak Samanta|2023|Org.Biomol.Chem.|21|2001|doi:10.1039/D3OB00077J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f8js1
title: CCDC 2242533: Experimental Crystal Structure Determination

description: Related Article: D.R. Vera, D.M. Ardila, A. Palma, J. Cobo, C. Glidewell|2023|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|79|94|doi:10.1107/S2053229623001432
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f8jt2
title: CCDC 2242534: Experimental Crystal Structure Determination

description: Related Article: D.R. Vera, D.M. Ardila, A. Palma, J. Cobo, C. Glidewell|2023|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|79|94|doi:10.1107/S2053229623001432
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f8jv3
title: CCDC 2242535: Experimental Crystal Structure Determination

description: Related Article: D.R. Vera, D.M. Ardila, A. Palma, J. Cobo, C. Glidewell|2023|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|79|94|doi:10.1107/S2053229623001432
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f8jw4
title: CCDC 2242536: Experimental Crystal Structure Determination

description: Related Article: D.R. Vera, D.M. Ardila, A. Palma, J. Cobo, C. Glidewell|2023|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|79|94|doi:10.1107/S2053229623001432
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f8jx5
title: CCDC 2242537: Experimental Crystal Structure Determination

description: Related Article: D.R. Vera, D.M. Ardila, A. Palma, J. Cobo, C. Glidewell|2023|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|79|94|doi:10.1107/S2053229623001432
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.22194139.v1
title: Mass spectrometry source data

description: TRAF6-associated proteins in innate immunity response in miiuy croaker
DOI: 10.6084/m9.figshare.22194139.v2
title: Mass spectrometry source data in "The protease calpain2a limits Innate Immunity by Targeting TRAF6 in Teleost Fish"

description: TRAF6-associated proteins in innate immunity response in miiuy croaker
DOI: 10.5281/zenodo.7648512
title: Microcosm data and water potential

description: Sheet 1. Data of the mean weight diameter (MWD) for dry and wet sieving (MWDd and MWDw respectively). Also the stability index (SI), water loss, geometric water content, water contact angle (WCA), sorptivity, fungal biomass and colony density and growth rate of colonies. The data was obtained after inoculation of 29 fungal strains and one control at low and high moisture. Sheet 2: Data for sieve fractions from microcosm experiment. Data used in Supplementary S3. Fig S3, the data was obtained after inoculation of 29 fungal strains and one control at low and high moisture. Sheet 3. Data from water potential experiment, the data was obtained after inoculation of 29 fungal strains and one control at low and high moisture which were divided in 3 blocks.
DOI: 10.5281/zenodo.7648511
title: Microcosm data and water potential

description: Sheet 1. Data of the mean weight diameter (MWD) for dry and wet sieving (MWDd and MWDw respectively). Also the stability index (SI), water loss, geometric water content, water contact angle (WCA), sorptivity, fungal biomass and colony density and growth rate of colonies. The data was obtained after inoculation of 29 fungal strains and one control at low and high moisture. Sheet 2: Data for sieve fractions from microcosm experiment. Data used in Supplementary S3. Fig S3, the data was obtained after inoculation of 29 fungal strains and one control at low and high moisture. Sheet 3. Data from water potential experiment, the data was obtained after inoculation of 29 fungal strains and one control at low and high moisture which were divided in 3 blocks.
DOI: 10.25318/42250002-fra
title: Enquête sur les modes de garde avant et après l'école au Canada : fichier de microdonnées à grande diffusion

description: Ce fichier de microdonnées à grande diffusion (FMGD) renferme des données non agrégées associées à une vaste gamme de variables recueillies dans le cadre de l'Enquête sur les modes de garde avant et après l'école au Canada (EMGAAEC). L'EMGAAEC porte sur les modes de garde au Canada pour les enfants qui fréquentent l'école (c-à-d. les enfants âgés de 4 à 12 ans). L'enquête inclut des questions sur les divers modes d'apprentissage et de garde des enfants, les difficultés auxquelles certaines familles peuvent être confrontées lorsqu'elles cherchent des services de garde, ainsi que les raisons pour lesquelles ces services ne sont pas utilisés. Veuillez noter que les enfants de moins de 6 ans ne sont pas inclus dans ce FMGD. Ces données sont disponibles via le fichier maître ou le FMGD de l'Enquête sur les modes d'apprentissage et de garde des jeunes enfants (EMAGJE).
DOI: 10.5281/zenodo.7688700
title: Dataset for the workshop paper titled "Automating GUI-based Software Testing with GPT-3" published at AIST 2023

description: The training dataset for the research paper "Automating GUI-based Software Testing with GPT-3" presented at the 3rd International Workshop on Artificial Intelligence in Software Testing (AIST 2023), which was a part of the 16th IEEE International Conference on Software Testing, Verification and Validation (ICST 2023). The dataset contains prompt completion pairs acquired through user interaction with the software and was used to fine-tune the GPT-3 model. The dataset is in the .jsonl format specified by OpenAI.
DOI: 10.5281/zenodo.7688699
title: Dataset for the workshop paper titled "Automating GUI-based Software Testing with GPT-3" published at AIST 2023

description: The training dataset for the research paper "Automating GUI-based Software Testing with GPT-3" presented at the 3rd International Workshop on Artificial Intelligence in Software Testing (AIST 2023), which was a part of the 16th IEEE International Conference on Software Testing, Verification and Validation (ICST 2023). The dataset contains prompt completion pairs acquired through user interaction with the software and was used to fine-tune the GPT-3 model. The dataset is in the .jsonl format specified by OpenAI.
DOI: 10.5281/zenodo.7688519
title: Supplementary Source Data Files

description: Supplementary Main Data.
DOI: 10.5281/zenodo.7688518
title: Supplementary Source Data Files

description: Supplementary Main Data.
DOI: 10.5281/zenodo.7491326
title: Supplementary Source Data

description: Supplementary Main Data.
DOI: 10.5281/zenodo.7491325
title: Supplementary Source Data

description: Supplementary Main Data.
DOI: 10.6084/m9.figshare.22194139
title: Mass spectrometry source data in "The protease calpain2a limits Innate Immunity by Targeting TRAF6 in Teleost Fish"

description: TRAF6-associated proteins in innate immunity response in miiuy croaker
DOI: 10.6084/m9.figshare.22194139.v4
title: Mass spectrometry source data in "The protease calpain2a limits Innate Immunity by Targeting TRAF6 in Teleost Fish"

description: TRAF6-associated proteins in innate immunity response in miiuy croaker
DOI: 10.6084/m9.figshare.22194139.v3
title: Mass spectrometry source data in "The protease calpain2a limits Innate Immunity by Targeting TRAF6 in Teleost Fish"

description: TRAF6-associated proteins in innate immunity response in miiuy croaker