cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3999547
title: Data and statistical analysis for: Bacterial nanotubes are a manifestation of cell death

description: Contains all data and code to reproduce the statistical analysis in the Supplementary file 2 for the paper "Bacterial nanotubes are a manifestation of cell death" to be published in Nature Communications. <strong>Contents:</strong> statistical_analysis.Rmd is the main document written in R Markdown statistical_analysis.html is a compiled version of statistical_analysis.Rmd showing all the computed results. The .xlsx files contain raw data used for the analysis - their names indiciate the figure they refer to. See the main file for code that can read the data. The code can also be accessed at https://github.com/cas-bioinf/nanotubes-death
DOI: 10.6084/m9.figshare.12413498.v1
title: Additional file 1 of CRISPRpred(SEQ): a sequence-based method for sgRNA on target activity prediction using traditional machine learning

description: Additional file 1 This file contains the DeepCRISPR data for cell HCT116.
DOI: 10.6084/m9.figshare.12413465
title: tcr_beta_synrep_set1_06.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12413450
title: tcr_beta_synrep_set1_05.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12413444
title: Data for 'Magnetotail-Inner Magnetosphere Transport Associated With Fast Flows Based on Combined Global-Hybrid and CIMI Simulation.'

description: The numerical data used for 'Magnetotail-Inner Magnetosphere Transport Associated With Fast Flows Based on Combined Global-Hybrid and CIMI Simulation.'
DOI: 10.6084/m9.figshare.12413450.v1
title: tcr_beta_synrep_set1_05.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12413465.v1
title: tcr_beta_synrep_set1_06.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12413438
title: Dataset for preliminary study on the oxidative stress profile of selected body tissues following the co-administration of Cisplatin and Resveratrol in Sprague-Dawley rats

description: Dataset for preliminary study on the oxidative stress profile of selected body tissues following the co-administration of Cisplatin and Resveratrol in Sprague-Dawley rats<b> </b>
DOI: 10.6084/m9.figshare.12413423
title: Supplemental Table 1.xlsx

description: Supplemental Table 1. This is the statistical output for every comparison made for the manuscript. <br>
DOI: 10.6084/m9.figshare.12413423.v1
title: Supplemental Table 1.xlsx

description: Supplemental Table 1. This is the statistical output for every comparison made for the manuscript. <br>
DOI: 10.6084/m9.figshare.12413393
title: figshare data.xlsx

description: data from 79 patients with sinogenic orbital cellulitis showing: age, gender, organisms grown
DOI: 10.6084/m9.figshare.12413393.v1
title: figshare data.xlsx

description: data from 79 patients with sinogenic orbital cellulitis showing: age, gender, organisms grown
DOI: 10.6084/m9.figshare.12413402.v1
title: Data sets

description: These are the data sets featured in the manuscripts reporting the two proposed distributions.We thank Ulrich Ansorge and Marijke Schotanus-Dijkstra for sharing their data and allowing us to make it open access (we recommend that whenever these data are featured or referred to in other manuscripts, the original articles reporting those data are cited).<br>The articles reporting these data sets are:<br>Ansorge, U., Kiefer, M., Khalid, S., Grassl, S., & König, P. (2010). Testing the theory of embodied cognition with subliminal words. <i>Cognition, 116</i>(3), 303-320.<br>Schotanus-Dijkstra, M., ten Klooster, P., Drossaert, C., Pieterse, M., Bolier, L., Walburg, J., & Bohlmeijer, E. (2016). Validation of the Flourishing Scale in a sample of people with suboptimal levels of mental well-being. <i>BMC Psychology, 4:</i>12. DOI 10.1186/s40359-016-0116-5<br><br>
DOI: 10.6084/m9.figshare.12413348
title: Yu-Tarim-JGR.docx

description: Carbon and oxygen isotope data of the Sepabayi section<b></b>
DOI: 10.6084/m9.figshare.12413348.v1
title: Yu-Tarim-JGR.docx

description: Carbon and oxygen isotope data of the Sepabayi section<b></b>
DOI: 10.6084/m9.figshare.12413147
title: tcr_beta_synrep_set1_04.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12413111
title: tcr_beta_synrep_set1_03.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12413147.v1
title: tcr_beta_synrep_set1_04.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12413090
title: Kazuo Kondo

description: The Natural Philosophy of Kazuo Kondo - Supplementary Materials. Post-RAAG Reports, Master Index, Obituaries in Japanese and English, Scans of major correspondence and other related materials.<br>
DOI: 10.6084/m9.figshare.12413111.v1
title: tcr_beta_synrep_set1_03.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12413039
title: tcr_beta_synrep_set1_01.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12413093
title: tcr_beta_synrep_set1_02.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12413039.v1
title: tcr_beta_synrep_set1_01.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12413024
title: SLA_5_15_2018

description: Sea level daily gridded data for the global ocean from 1993 to present.From https://cds.climate.copernicus.eu/
DOI: 10.6084/m9.figshare.12413093.v1
title: tcr_beta_synrep_set1_02.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12413117.v1
title: Delayed acceptance ABC-SMC

description: Approximate Bayesian computation (ABC) is now an established technique for statistical inference used in cases where the likelihood function is computationally expensive or not available. It relies on the use of a model that is specified in the form of a simulator, and approximates the likelihood at a parameter value <i>θ</i> by simulating auxiliary data sets <i>x</i> and evaluating the distance of <i>x</i> from the true data <i>y</i>. However, ABC is not computationally feasible in cases where using the simulator for each <i>θ</i> is very expensive. This paper investigates this situation in cases where a cheap, but approximate, simulator is available. The approach is to employ delayed acceptance Markov chain Monte Carlo (MCMC) within an ABC sequential Monte Carlo (SMC) sampler in order to, in a first stage of the kernel, use the cheap simulator to rule out parts of the parameter space that are not worth exploring, so that the “true” simulator is only run (in the second stage of the kernel) where there is a reasonable chance of accepting proposed values of <i>θ</i>. We show that this approach can be used quite automatically, with few tuning parameters. Applications to stochastic differential equation models and latent doubly intractable distributions are presented.
DOI: 10.6084/m9.figshare.12413024.v2
title: SLA_5_15_2018

description: Sea level daily gridded data for the global ocean from 1993 to present.From https://cds.climate.copernicus.eu/
DOI: 10.6084/m9.figshare.12413024.v1
title: May_SLA

description: Sea level daily gridded data for the global ocean from 1993 to present.From https://cds.climate.copernicus.eu/
DOI: 10.6084/m9.figshare.12412796
title: tcr_beta_synrep_set1_00.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)<br>
DOI: 10.6084/m9.figshare.12412889
title: Data base for impact of 2014 marine heatwave and El Niño 2015 in Baja california.

description: Hydrographic, chemical and biological data collected in Todos Santos Bay, Baja California, Mexico from August 2014 to December, 2015, duriing the occurrence of the marine heatwave (nicknamed The Blob) and El Niño 2015. The dataset consists 17 sampling dates in 4 stations in Todos Santos Bay and the following variables: Cruise, Station, Date, Temperature, Salinity, Chlorophyll-a, Size-fractionated Chlorophyll (Small cells), Size-fractionated Chlorophyll (Large cells), %Small, %Large, Small/Large ratio, NO3+NO2, H2PO4, H4SiO4, N:Si, N:P.<br>Data used in a manuscript submited to Journal of Geophysical Research - Oceans<br>Delgadillo-Hinojosa, F., Félix-Bermúdez, A., Torres-Delgado, E.V., Durazo, R., Camacho-Ibar, V., Mejía, A., Ruiz, M.C., Linacre, L. 2020. Impacts of the 2014-2015 warm-water anomalies on nutrients, chlorophyll-<i>a</i> and hydrographic conditions in the coastal zone of northern Baja California. Submitted to Journal of Geophysical Research-Oceans.<br>
DOI: 10.6084/m9.figshare.12412796.v1
title: tcr_beta_synrep_set1_00.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)<br>
DOI: 10.6084/m9.figshare.12412673
title: PolyStress3D Ttopology optimization code from A unified approach for topology optimization with local stress constraints considering various failure criteria: von Mises, Drucker–Prager, Tresca, Mohr–Coulomb, Bresler– Pister and Willam–Warnke

description: Topology optimization code. The files Script_Corbel3D.m and Script_Dome3D.m run the two examples presented in the paper
DOI: 10.6084/m9.figshare.12412676
title: Survey on Employment and the Informal Sector.dta

description: The second Survey on Employment and the Informal Sector (EESI 2) is carried out in 2010 by the Cameroon National Institute of Statistics (NIS). This survey is part of the operations chosen in the National Strategy for the Development of Statistics (NSDS) for the follow-up and evaluation of actions undertaken in the framework of the Growth and Employment Strategy Paper (GESP) which integrates the achievement of the Millennium Development Goals (MDGs) as a concern. This Survey on Employment and the Informal Sector (EESI) is a two-phase national statistical survey, the first phase of which aims to capture employment (Survey on the employment) and the second to assess the economic activities of the informal non-agricultural sector (Survey on the informal Sector).
DOI: 10.6084/m9.figshare.12412673.v1
title: PolyStress3D Ttopology optimization code from A unified approach for topology optimization with local stress constraints considering various failure criteria: von Mises, Drucker–Prager, Tresca, Mohr–Coulomb, Bresler– Pister and Willam–Warnke

description: Topology optimization code. The files Script_Corbel3D.m and Script_Dome3D.m run the two examples presented in the paper
DOI: 10.6084/m9.figshare.12412661
title: Data set Salix transect weevils

description: Data set for weevils collected on the Salix transect of Europe 2015
DOI: 10.6084/m9.figshare.12412661.v1
title: Data set Salix transect weevils

description: Data set for weevils collected on the Salix transect of Europe 2015
DOI: 10.21253/dmu.12412010
title: Global art contest volume IV

description: Amidst all the lockdown dark clouds, these colourful pictures gave us a reason to celebrate. At children stories in times of Corona, we organised weekly events. Then we published those as digital volumes. We have send these images to the local care homes to uplift moods and share positive vibes.
DOI: 10.17633/rd.brunel.12411083
title: TDX-ASSSIT _Task 1.6_D1.12 Update IEC Proposals

description: Deliverable 12 (D1.12) of TDX ASSIST project channel the output of Task 1.6 into recommendations by distributing field test learning into appropriate standards sections. Comprehensive checks will ensure contributions are developed for all standards named in Task 1.6 documentation. A detailed description of the data files and their development process is provided in D1.12 on http://www.tdx-assist.eu<br>The data files are listed as the followings:<br>1. TDX-ASSIST-UseCases-WP1-V16.zip: TDX-ASSIST WP1 Use Cases repository provided as an enterprise architect file.<br>2. TDX-ASSIST-UseCases-WP1-V16.eap: TDX-ASSIST WP1 Use Cases repository provided as HTML file.<br>3. TDX-ASSIST-WP1-EDF UC&Profiles V1.zip:The EDF repository is proposed as an Entreprise Architect file repository and its html export. TDX-ASSIST EDF repository includes Use Cases, implemented profiles associated to ESMP and EDF demonstrator.<br><br>4. EDF-Data Sets TDX-ASSIST-EDF data sets.7z: Compressed File include files which represent Distribution Networks compliant with CDPSM (IEC 61968-13) profiles or CGMES profiles. <br>5. EDF-IOP-XSD TDX-ASSIST-EDF-IOP-XSD-Messages.7z: Compressed File that are Message structures proposed by EDF, based on CIM model and ESMP contextual model and which have been experimented in EDF demonstrator.<br>6. TDX-ASSIST CDPSM-CGMES convergence_ForIEC_and_TDX_WP1_T1-6_D1.12.pdf A study that EDF conducted in 2019on CDPSM/CGMES . It was presented to IEC TC57 during march 2020 meeting. <br>
DOI: 10.21253/dmu.12412010.v1
title: Global art contest volume IV

description: Amidst all the lockdown dark clouds, these colourful pictures gave us a reason to celebrate. At children stories in times of Corona, we organised weekly events. Then we published those as digital volumes. We have send these images to the local care homes to uplift moods and share positive vibes.
DOI: 10.17633/rd.brunel.12411083.v1
title: TDX-ASSSIT _Task 1.6_D1.12 Update IEC Proposals

description: Deliverable 12 (D1.12) of TDX ASSIST project channel the output of Task 1.6 into recommendations by distributing field test learning into appropriate standards sections. Comprehensive checks will ensure contributions are developed for all standards named in Task 1.6 documentation. A detailed description of the data files and their development process is provided in D1.12 on http://www.tdx-assist.eu<br>The data files are listed as the followings:<br>1. TDX-ASSIST-UseCases-WP1-V16.zip: TDX-ASSIST WP1 Use Cases repository provided as an enterprise architect file.<br>2. TDX-ASSIST-UseCases-WP1-V16.eap: TDX-ASSIST WP1 Use Cases repository provided as HTML file.<br>3. TDX-ASSIST-WP1-EDF UC&Profiles V1.zip:The EDF repository is proposed as an Entreprise Architect file repository and its html export. TDX-ASSIST EDF repository includes Use Cases, implemented profiles associated to ESMP and EDF demonstrator.<br><br>4. EDF-Data Sets TDX-ASSIST-EDF data sets.7z: Compressed File include files which represent Distribution Networks compliant with CDPSM (IEC 61968-13) profiles or CGMES profiles. <br>5. EDF-IOP-XSD TDX-ASSIST-EDF-IOP-XSD-Messages.7z: Compressed File that are Message structures proposed by EDF, based on CIM model and ESMP contextual model and which have been experimented in EDF demonstrator.<br>6. TDX-ASSIST CDPSM-CGMES convergence_ForIEC_and_TDX_WP1_T1-6_D1.12.pdf A study that EDF conducted in 2019on CDPSM/CGMES . It was presented to IEC TC57 during march 2020 meeting. <br>
DOI: 10.6084/m9.figshare.12410870
title: Price Dividend Ratio and Long-Run Stock Returns: A Score-Driven State Space Model

description: <b><i>Abstract–</i>In this article, we develop a general framework to analyze state space models with time-varying system matrices, where time variation is driven by the score of the conditional likelihood. We derive a new filter that allows for the simultaneous estimation of the state vector and of the time-varying matrices. We use this method to study the time-varying relationship between the price dividend ratio, expected stock returns and expected dividend growth in the United States since 1880. We find a significant increase in the long-run equilibrium value of the price dividend ratio over time, associated with a fall in the long-run expected rate of return on stocks. The latter can be attributed mainly to a decrease in the natural rate of interest, as the long-run risk premium has only slightly fallen.</b>
DOI: 10.5281/zenodo.3999561
title: Extraversion and Trust Conformity

description: Data for Extraversion-Trust Conformity Study.
DOI: 10.6084/m9.figshare.12410870.v1
title: Price Dividend Ratio and Long-Run Stock Returns: A Score-Driven State Space Model

description: <b><i>Abstract–</i>In this article, we develop a general framework to analyze state space models with time-varying system matrices, where time variation is driven by the score of the conditional likelihood. We derive a new filter that allows for the simultaneous estimation of the state vector and of the time-varying matrices. We use this method to study the time-varying relationship between the price dividend ratio, expected stock returns and expected dividend growth in the United States since 1880. We find a significant increase in the long-run equilibrium value of the price dividend ratio over time, associated with a fall in the long-run expected rate of return on stocks. The latter can be attributed mainly to a decrease in the natural rate of interest, as the long-run risk premium has only slightly fallen.</b>
DOI: 10.5281/zenodo.3999560
title: Extraversion and Trust Conformity

description: Data for Extraversion-Trust Conformity Study.
DOI: 10.6084/m9.figshare.12410729
title: Confidence and Prediction in Linear Mixed Models: Do Not Concatenate the Random Effects. Application in an Assay Qualification Study

description: <b><i>Abstract–</i>In the pharmaceutical industry, all analytical methods must be shown to deliver unbiased and precise results. In an assay qualification or validation study, the trueness, accuracy, and intermediate precision are usually assessed by comparing the measured concentrations to their nominal levels. Trueness is assessed by using Confidence Intervals (CIs) of mean measured concentration, accuracy by Prediction Intervals (PIs) for a future measured concentration, and the intermediate precision by the total variance. ICH and USP guidelines alike request that all relevant sources of variability must be studied, for example, the effect of different technicians, the day-to-day variability or the use of multiple reagent lots. Those different random effects must be modeled as crossed, nested, or a combination of both; while concatenating them to simplify the model is often taken place. This article compares this simplified approach to a mixed model with the actual design. Our simulation study shows an under-estimation of the intermediate precision and, therefore, a substantial reduction of the CI and PI. The power for accuracy or trueness is consequently over-estimated when designing a new study. Two real datasets from assay validation study during vaccine development are used to illustrate the impact of such concatenation of random variables.</b>
DOI: 10.6084/m9.figshare.12410591
title: Data “What the night used to be” - Montreal

description: Project: “What the night used to be”: YouTube and live music videos as digital heritage of the urban night. The case of Montreal<br>Comment: A first exploratory sample of data was collected through the use of the keyword “live music montreal” in YT in order to get a general picture. The results were filtered alternatively by view counts and relevance. A second sample was collected based on iconic independent venues in Montreal: La Sala Rossa and Casa del Popolo (both are owned by the same local company, founded in 2000 by Godspeed You! Black Emperor’s band member Mauro Pezzente).The sample corresponds to a total of 21 videos that I collected and analysed until saturation (Saunders et al, 2018). The data collection was not restricted to a specific timeframe, as heritage is supposed to last. Eventually, the live events broadcasted in the sample ranged from 1979 to 2019. All the research was conducted through a private window, so my personal navigation preferences didn’t interfere.<br>
DOI: 10.6084/m9.figshare.12410564
title: Metadata record for: Chromosome-level genome assembly of Tarim red deer, Cervus elaphus yarkandensis

description: This dataset contains key characteristics about the data described in the Data Descriptor Chromosome-level genome assembly of Tarim red deer, Cervus elaphus yarkandensis. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12410591.v1
title: Data “What the night used to be” - Montreal

description: Project: “What the night used to be”: YouTube and live music videos as digital heritage of the urban night. The case of Montreal<br>Comment: A first exploratory sample of data was collected through the use of the keyword “live music montreal” in YT in order to get a general picture. The results were filtered alternatively by view counts and relevance. A second sample was collected based on iconic independent venues in Montreal: La Sala Rossa and Casa del Popolo (both are owned by the same local company, founded in 2000 by Godspeed You! Black Emperor’s band member Mauro Pezzente).The sample corresponds to a total of 21 videos that I collected and analysed until saturation (Saunders et al, 2018). The data collection was not restricted to a specific timeframe, as heritage is supposed to last. Eventually, the live events broadcasted in the sample ranged from 1979 to 2019. All the research was conducted through a private window, so my personal navigation preferences didn’t interfere.<br>