cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28021634
title: <b><i>Supporting Information</i></b>

description: The Supplementary Information supporting this article was provided containing:Characterization data and original spectral files of the target compounds <b>C</b><b>1</b><b>–</b><b>C30</b>......................S2–S74.
DOI: 10.6084/m9.figshare.28021634.v1
title: <b><i>Supporting Information</i></b>

description: The Supplementary Information supporting this article was provided containing:Characterization data and original spectral files of the target compounds <b>C</b><b>1</b><b>–</b><b>C30</b>......................S2–S74.
DOI: 10.6084/m9.figshare.c.3615983_d4
title: Additional file 8 of Scope and limitations of yeast as a model organism for studying human tissue-specific pathways

description: PPI Nets. Protein-protein interaction networks used as input in this study. (ZIP 762 Kb)
DOI: 10.60656/87eeb34c78a14535
title: Custom collection of MWR brightness temperature data from Ny-Ålesund between 13 Apr 2023 and 11 Dec 2024
DOI: 10.6084/m9.figshare.c.3616007_d6
title: Additional file 1: Table S1. of Functional elucidation of the non-coding RNAs of Kluyveromyces marxianus in the exponential growth phase

description: Strand-specific RNA-seq. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3616010_d6
title: Additional file 9: Table S8. of Genome-wide analysis of DNA methylation and gene expression defines molecular characteristics of Crohnâ  s disease-associated fibrosis

description: Primers for gene expression and bisulfite sequencing. The bisulfite sequencing primers for specific chromosomal locations and the qRT-PCR primer sequences and accession numbers, for WNT2B, PTGIS, and PTGDS are shown. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3616007_d7
title: Additional file 5: Table S4. of Functional elucidation of the non-coding RNAs of Kluyveromyces marxianus in the exponential growth phase

description: Transfrag. (XLSX 664 kb)
DOI: 10.6084/m9.figshare.c.3616010_d7
title: Additional file 6:Table S5. of Genome-wide analysis of DNA methylation and gene expression defines molecular characteristics of Crohnâ  s disease-associated fibrosis

description: Network gene associations for PTGIS. List of genes in RNA-seq data set (bold italics) and in GeneMANIA database (italics) that interact with PTGIS are shown. (XLSX 45Â kb)
DOI: 10.6084/m9.figshare.c.3616007_d8
title: Additional file 2: Table S2. of Functional elucidation of the non-coding RNAs of Kluyveromyces marxianus in the exponential growth phase

description: Annotation of Kluyveromyces genome. (XLSX 286 kb)
DOI: 10.6084/m9.figshare.c.3616010_d8
title: Additional file 7:Table S6. of Genome-wide analysis of DNA methylation and gene expression defines molecular characteristics of Crohnâ  s disease-associated fibrosis

description: Network gene associations for PTGDS. List of genes in RNA-seq data set (bold italics) and in GeneMANIA database (italics) that interact with PTGDS are shown. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.c.3616010_d9
title: Additional file 2: Table S2. of Genome-wide analysis of DNA methylation and gene expression defines molecular characteristics of Crohnâ  s disease-associated fibrosis

description: RNA-seq analysis of differentially expressed genes in control and fibrotic HIF. Total mRNAs from three different normal (2, 3, 4) and fibrotic fibroblasts (6, 7, 8) were subjected to RNA-seq analysis. Normalized FPKM values were averaged and the log base twofold change for fibrotic versus normal HIF calculated. FDR adjusted p values are shown. Genes were considered significant if the adjusted p value was &lt;0.05 and the log fold change was at least 1.5-fold. The differentially expressed genes are highlighted. (XLS 45Â kb)
DOI: 10.6084/m9.figshare.c.3616052_d1
title: Additional file 1: of Somatic cancer variant curation and harmonization through consensus minimum variant level data

description: Example of the MVLD data format. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3616058_d1
title: Additional file 1: Table S1. of Whole genome sequencing of Salmonella Typhimurium illuminates distinct outbreaks caused by an endemic multi-locus variable number tandem repeat analysis type in Australia, 2014

description: Genomic features of SNPs identified. (XLS 33Â kb)
DOI: 10.6084/m9.figshare.c.3616109_d2
title: Additional file 3: of Bayesian species delimitation in Pleophylla chafers (Coleoptera) â   the importance of prior choice and morphology

description: Supplementary table S9. (XLSX 64Â kb)
DOI: 10.6084/m9.figshare.c.3616109_d3
title: Additional file 5: of Bayesian species delimitation in Pleophylla chafers (Coleoptera) â   the importance of prior choice and morphology

description: Supplementary table S14. (XLS 40Â kb)
DOI: 10.6084/m9.figshare.c.3616172_d1
title: Additional file 5: Table S5. of A quantitative genome-wide RNAi screen in C. elegans for antifungal innate immunity genes

description: Clone verification and the identification of potential target genes for 360 Nipi clones; genes that are potentially targeted by more than one clone; identification of clones potentially targeting histone genes; phenotypic characterization; comparison with published data. (XLSX 211 kb)
DOI: 10.6084/m9.figshare.c.3616172_d2
title: Additional file 2: Table S2. of A quantitative genome-wide RNAi screen in C. elegans for antifungal innate immunity genes

description: Results for Hipi clone candidates retained in the first round of screening and identification of potential target genes. (XLSX 134 kb)
DOI: 10.60656/0175ec5e85c74b1b
title: Custom collection of MWR brightness temperature data from Mindelo between 22 Mar 2023 and 13 Dec 2024
DOI: 10.6084/m9.figshare.c.3616172_d3
title: Additional file 7: Table S6. of A quantitative genome-wide RNAi screen in C. elegans for antifungal innate immunity genes

description: WormNet and expression analysis systematic explorer (EASE) analyses. (XLSX 131 kb)
DOI: 10.6084/m9.figshare.c.3616172_d4
title: Additional file 1: Table S1. of A quantitative genome-wide RNAi screen in C. elegans for antifungal innate immunity genes

description: The list of 21,223 clones used in this study. (XLSX 355 kb)
DOI: 10.6084/m9.figshare.c.3616172_d5
title: Additional file 10: Table S9. of A quantitative genome-wide RNAi screen in C. elegans for antifungal innate immunity genes

description: Analysis of enrichment of predicted Nipi proteins in conserved protein complexes. (XLSX 136 kb)
DOI: 10.6084/m9.figshare.c.3616232_d2
title: Additional file 2: Table S2. of Prevalence of hypertension and its treatment among adults presenting to primary health clinics in rural Zambia: analysis of an observational database

description: Multivariate logistic regression for predictors of hypertension control among patients taking antihypertensive medication, nâ  =â  4223. File format: .xlsx (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3616250_d1
title: Additional file 5: Table S5. of p53, cathepsin D, Bcl-2 are joint prognostic indicators of breast cancer metastatic spreading

description: TP53 indels and stop codon chromatograms. (XLSX 1620Â kb)
DOI: 10.6084/m9.figshare.c.3616247_d2
title: Additional file 3: of A high-density genetic map reveals variation in recombination rate across the genome of Daphnia magna

description: Estimated physical (in bp) and genetic (in cM) positions of all 4037 markers and the average recombination rates (cM/Mb) estimated for intervals between adjacent markers. (XLSX 281 kb)
DOI: 10.6084/m9.figshare.c.3616250_d2
title: Additional file 4: Table S4A. of p53, cathepsin D, Bcl-2 are joint prognostic indicators of breast cancer metastatic spreading

description: p53 structure and main mutation sites. Table S4B. Ha-Ras structure and main mutation sites. Table S4C. TP53 and Ha-RAS amplification primers. (XLSX 472Â kb)
DOI: 10.6084/m9.figshare.c.3616247_d3
title: Additional file 2: of A high-density genetic map reveals variation in recombination rate across the genome of Daphnia magna

description: The framework and composite map of Daphnia magna. Listed information include the names of RAD markers; marker alignment position to D. magna genome assembly v2.4; marker assignment as a representative of a segregation pattern (“FRAME” marker), significance level of the segregation ratio distortion (SRD) for each marker based on the p-value of Chi-square test for a difference between the observed and the expected Mendelian ratio (p
DOI: 10.6084/m9.figshare.c.3616250_d3
title: Additional file 3: Table S3A. of p53, cathepsin D, Bcl-2 are joint prognostic indicators of breast cancer metastatic spreading

description: Spearman’ correlation matrix. Table S3B. Spearman’ correlation Rho coefficients. Table S3C. Spearman’ correlation P values. (XLSX 323 kb)
DOI: 10.6084/m9.figshare.c.3616250_d4
title: Additional file 1: Table S1. of p53, cathepsin D, Bcl-2 are joint prognostic indicators of breast cancer metastatic spreading

description: Parameters utilized for assessing the risk of relapse. (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.c.3616265_d1
title: Additional file 6: Table S3. of Characterization of the murine macrophage response to infection with virulent and avirulent Burkholderia species

description: A list of loci examined in comparative genomic study. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3616250_d5
title: Additional file 2: Table S2A. of p53, cathepsin D, Bcl-2 are joint prognostic indicators of breast cancer metastatic spreading

description: IHC analysis of consensus parameters of relapsed versus control BC cases. Table S2B. Invasion and cell cycle/apoptosis parameters of relapsed versus control BC cases. (XLSX 150Â kb)
DOI: 10.6084/m9.figshare.c.3616265_d2
title: Additional file 5: Table S2. of Characterization of the murine macrophage response to infection with virulent and avirulent Burkholderia species

description: Pairwise comparison of p-values between Burkholderia strain for each gene at 4 and 8Â h. Column headings specify gene, strain 1, strain 2, p-value, t-statistic and exposure time. Left and right columns correspond to the 4 and 8Â h exposure times, respectively. T-statistic is based on comparisons of strain 1 to strain 2. P-values less than 0.2 are listed. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3616298_d2
title: Additional file 4: of Colonization potential to reconstitute a microbe community in patients detected early after fecal microbe transplant for recurrent C. difficile

description: Alpha and beta diversity metrics. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3616301_d1
title: Additional file 2: of BEACON: automated tool for Bacterial GEnome Annotation ComparisON

description: Contains the source code of BEACON in C++ for command line use along with makefile, a ReadMe file and the license text. (TGZ 42Â kb)
DOI: 10.6084/m9.figshare.c.3616298_d3
title: Additional file 3: of Colonization potential to reconstitute a microbe community in patients detected early after fecal microbe transplant for recurrent C. difficile

description: Relative abundance of microbes at family level taxonomy. (XLSX 69 kb)
DOI: 10.6084/m9.figshare.c.3616313_d1
title: Additional file 3: of Global DNA methylation profiling reveals new insights into epigenetically deregulated protein coding and long noncoding RNAs in CLL

description: Additonal data 2. (XLS 172 kb)
DOI: 10.6084/m9.figshare.c.3616313_d2
title: Additional file 1: of Global DNA methylation profiling reveals new insights into epigenetically deregulated protein coding and long noncoding RNAs in CLL

description: Additonal data 1. (XLS 31.5 kb)
DOI: 10.6084/m9.figshare.c.3616313_d3
title: Additional file 6: of Global DNA methylation profiling reveals new insights into epigenetically deregulated protein coding and long noncoding RNAs in CLL

description: Additonal data 5. (XLS 5827 kb)
DOI: 10.6084/m9.figshare.c.3616334_d1
title: MOESM2 of Proteome analysis of excretory-secretory proteins of Entamoeba histolytica HM1:IMSS via LC–ESI–MS/MS and LC–MALDI–TOF/TOF

description: Additional file 2. Protein score from LC-ESI-MS/MS.
DOI: 10.6084/m9.figshare.c.3616367_d4
title: MOESM6 of Infiltration-RNAseq: transcriptome profiling of Agrobacterium-mediated infiltration of transcription factors to discover gene function and expression networks in plants

description: Additional file 8: Table S6. Â Differentially expressed Nicotiana benthamiana transcripts between infiltrated Agrobacterium and infiltrated Agrobacterium containing AcMYB10 replicate sets.
DOI: 10.6084/m9.figshare.c.3616382_d1
title: Additional file 1 of Protein secondary structure prediction using a small training set (compact model) combined with a Complex-valued neural network approach

description: Table S1. The 25 sequences of the G Switch Proteins dataset (GSW25). The 12 G A sequences and 13 G B sequences are given and cited with their original source. Table S2. The 55 proteins of the compact model (SSP 55). The protein names, SCOP classes, folds, number of residues, and the Q 3 achieved per protein are given. Table S3. The confusion matrices broken down by SCOP classes, are given for the SSP 55 proteins. Table S4. The confusion matrices broken down by SCOP classes, are given for the remainder of the CB513 dataset (330 proteins). (XLSX 30 KB)
DOI: 10.6084/m9.figshare.c.3616367_d5
title: MOESM3 of Infiltration-RNAseq: transcriptome profiling of Agrobacterium-mediated infiltration of transcription factors to discover gene function and expression networks in plants

description: Additional file 3: Table S3. Â Significantly differentially expressed Medicago truncatulaÂ  genes (P-value &lt;0.05) between Control and LAP1 replicate sets, falling into hierarchical cluster 2.
DOI: 10.6084/m9.figshare.c.3616397_d1
title: Additional file 1: of Clinical service use as people with Attention Deficit Hyperactivity Disorder transition into adolescence and adulthood: a prospective longitudinal study

description: ADHD merged datasets (Combined data files for year 1, 2 and 3 of ADHD longitudinal study). (SAV 297 kb)
DOI: 10.6084/m9.figshare.c.3616394_d2
title: Additional file 2 of Predictive computational phenotyping and biomarker discovery using reference-free genome comparisons

description: The antibiotic susceptibility data for the Clostridium difficile genomes. (XLSX 20.2 kb)
DOI: 10.6084/m9.figshare.c.3616367_d6
title: MOESM7 of Infiltration-RNAseq: transcriptome profiling of Agrobacterium-mediated infiltration of transcription factors to discover gene function and expression networks in plants

description: Additional file 9: Table S7. Â Differentially expressed Nicotiana benthamiana transcripts between infiltrated Agrobacterium and infiltrated Agrobacterium containing AtLEC2 replicate sets.
DOI: 10.6084/m9.figshare.c.3616367_d7
title: MOESM4 of Infiltration-RNAseq: transcriptome profiling of Agrobacterium-mediated infiltration of transcription factors to discover gene function and expression networks in plants

description: Additional file 4: Table S4. Â Significantly differentially expressed Medicago truncatula genes (P-value &lt;0.05) between Control and LAP1 replicate sets, falling into hierarchical cluster 3.
DOI: 10.6084/m9.figshare.c.3616427_d1
title: Additional file 4: of A global assessment of the gender gap in self-reported health with survey data from 59 countries

description: Service utilization. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3616430_d1
title: Additional file 2: of Assessing the adequacy of essential nutrient intake in obese dogs undergoing energy restriction for weight loss: a cohort study

description: Study data. (XLSX 254Â kb)
DOI: 10.5517/cc3xc7l
title: CCDC 116629: Experimental Crystal Structure Determination

description: Related Article: D.J.Chesnut, R.C.Haushalter, J.Zubieta|1999|Inorg.Chim.Acta|292|41|doi:10.1016/S0020-1693(99)00168-1
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.30328144
title: S1: Sulfate reduction and hydrogen sulfide oxidation rates in marine sediments with cryptic sulfur cycling

description: Raw data
DOI: 10.6084/m9.figshare.30328144.v1
title: S1: Sulfate reduction and hydrogen sulfide oxidation rates in marine sediments with cryptic sulfur cycling

description: Raw data
DOI: 10.15131/shef.data.13373039
title: University of Sheffield Experimental Manhole Traces and CRTDs

description: This dataset describes experimental solute traces (upstream and downstream temporal concentration profiles) recorded in model surcharged manholes at the University of Sheffield from 1993–2007. Deconvolved cumulative residence time distributions (CRTDs) for each trace are also provided with this dataset. It accompanies the journal article submission entitled "Predicting manhole mixing using a compartmental model". This dataset was collected by Dr Robert O'Brien (EPSRC grant GR/H43366/01), Dr Peter Dennis, Dr Chanwit Saiyudthong, and Dr Shing-Tak Douglas Lau. Dr Fred Sonnenwald performed the deconvolution to obtain the CRTDs and uploaded this archive under EPSRC grant EP/P012027/1.
DOI: 10.15131/shef.data.13373039.v1
title: University of Sheffield Experimental Manhole Traces and CRTDs

description: This dataset describes experimental solute traces (upstream and downstream temporal concentration profiles) recorded in model surcharged manholes at the University of Sheffield from 1993–2007. Deconvolved cumulative residence time distributions (CRTDs) for each trace are also provided with this dataset. It accompanies the journal article submission entitled "Predicting manhole mixing using a compartmental model". This dataset was collected by Dr Robert O'Brien (EPSRC grant GR/H43366/01), Dr Peter Dennis, Dr Chanwit Saiyudthong, and Dr Shing-Tak Douglas Lau. Dr Fred Sonnenwald performed the deconvolution to obtain the CRTDs and uploaded this archive under EPSRC grant EP/P012027/1.
DOI: 10.15468/dl.w7efks
title: Occurrence Download

description: A dataset containing 21368 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Toxostoma bendirei (Coues, 1873)"
 ]
}

 The dataset includes 21368 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017346-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gmyn2r
title: Occurrence Download

description: A dataset containing 1268 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "DatasetKey is one of (iNaturalist Research-grade Observations, NABU|naturgucker, Cowan Tetrapod Collection - Mammals, UWBM Mammalogy Collection (Arctos), Royal Saskatchewan Museum - Mammalogy Collection, Vertebrate Zoology Division - Mammalogy, Yale Peabody Museum, Animal Sound Archive, Naturalis Biodiversity Center (NL) - Mammalia, Angelo State Natural History Collections (ASNHC) Mammal specimens (Arctos), CAS Mammalogy (MAM))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "TaxonKey is Alces alces (Linnaeus, 1758)"
 ]
}

 The dataset includes 1268 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017349-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25824/redu/pagi6v
title: Supplementary data: analysis of knowledge production territories based on the triple bottom line

description: Since the last century, various territories dedicated to knowledge production have emerged, such as university campuses, Science and Technology Parks, and more recently, innovation districts. Over the past decades, with the growth of the knowledge-based services sector, they have evolved in parallel with different innovation models, incorporating greater social and environmental concerns based on the Quintuple helix model. The related article investigates the strategies and approaches adopted in the transition of knowledge production territories to what some authors are calling the fourth generation, using the urban development initiative Paris-Saclay and the university campus distrotec, located respectively in France and Mexico, as case studies. This supplementary dataset presents the analytical model that allows for the comparison between different knowledge production territories (KPTs) regarding their level of development towards the fourth-generation concept, this analysis table was developed. It adapts the work of Liu et al. (2021), which includes 50 metrics for evaluating sustainable urban infrastructures, and adapted it for the analysis of the fourth-generation innovation district, Paris-Saclay. This research expands that framework, including KBUD indicators such as housing, social inclusion, and social diversity (Esmaeilpoorarabi, 2018). Two existing frameworks were used as the method of analysis: a) the TBL construct, proposed by Elkington (1997), which evaluates sustainability in companies based on the economic, social, and environmental dimensions; b) and KBUD, which originates from the TBL model, focused on KPTs. From this, two case studies were conducted in existing KPTs to compile their best practices within these theoretical pillars: a) the Paris-Saclay urban operation, located south of Paris, France; b) and the Distritotec university campus in Monterrey, Mexico. This would, therefore, be the path for the validation of the initial study. The adopted method allowed for the creation of an analytical procedure that catalogs best practices observed for each indicator in the case studies, using secondary data from documents, official websites, and articles on these territories. After the analysis, the practices applied to each indicator were identified, and a generic table with indicators and possible application practices was created to serve as a comparison between them.
DOI: 10.15468/dl.ff6kzx
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "StateProvince is Kansas",
 "TaxonKey is Agapostemon coloradinus (Vachal, 1903)"
 ]
}

 The dataset includes 46 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017348-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4ada8
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pangasius pangasius (Hamilton, 1822)"
 ]
}

 The dataset includes 103 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017350-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k8t7ra
title: Occurrence Download

description: A dataset containing 202862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than 50000",
 "Year is 2013",
 "DecimalLongitude is greater than or equal to 7.38",
 "DecimalLongitude is less than or equal to 9.03",
 "DecimalLatitude is greater than or equal to 55.1",
 "DecimalLatitude is less than or equal to 56.06"
 ]
}

 The dataset includes 202862 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017335-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.