cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/kcjdyvjnfk.2
title: Data for "CFD Simulations of Multiphase Flows: Interaction of Miscible Liquids with Different Temperatures"

description: A new OpenFOAM® based solver was developed for simulating multiphase fluid flow, consisting of two-miscible liquid phases with different temperatures and densities in a free-surface condition. The solver was named interMixingTemperatureFoam and was developed by programming the energy equation in terms of the temperature field on the preexisting OpenFOAM® interMixingFoam native solver. Following the solvers’ name convention in OpenFOAM®, the solver was named interMixingTemperatureFoam, where “interMixing” stands for the ability to solve the interaction between 3 incompressible fluids, two of which are miscible, and “Temperature” stands for the implementation of the energy equation in terms of the temperature field. Turbulence models, mesh generation schemes, and other generic utilities are available as part of the OpenFOAM® toolbox for case setting and running. This data set contains the required files to implement interMixingTemperatureFoam in OpenFOAM® v. 4.0. For different OpenFOAM® versions, the user can use this data set as guidance. A folder with an example of a case set is also included. This Data set is associated with the MDPI Water paper "CFD Simulations of Multiphase Flows: Interaction of Miscible Liquids with Different Temperatures".
DOI: 10.17632/pg4xyzz86n.1
title: Dataset for "Motion and clustering of bonded particles in narrow solid-liquid fluidized beds"

description: This data presents MATLAB scripts and data in order to reproduce the figures and videos obtained for the article "Motion and clustering of bonded particles in narrow solid-liquid fluidized beds"
DOI: 10.17632/n9r24r9tdb.1
title: Molecular competition in G1 controls when cells simultaneously commit to terminally differentiate and exit the cell-cycle. Zhao et al.

description: Dataset for Cell Reports article: "Molecular competition in G1 controls when cells simultaneously commit to terminally differentiate and exit the cell-cycle" Authors: Michael L. Zhao, Atefeh Rabiee, Kyle M. Kovary, Zahra Bahrami-Nejad, Brooks Taylor, and Mary N. Teruel
DOI: 10.17632/5ywmdd6fnd.1
title: PAI-1-dependent inactivation of SMAD4-modulated junction and adhesion complex in obese endometrial cancer. Lin et al.

description: Figure 1C. Representative sections of tissue microarrays immunofluorescently stained with the white adipose tissue 7 (WAT7) homing peptide, a known marker specific for ASCs (pink-red; see white arrows), CD31 for endothelial cells (green), and DAPI for nuclei (blue). Figure 4B-C. PLA indicating protein-protein interactions of PAI-1 and low-density lipoprotein receptor-related protein 1 (LRP1) on the cell surface (B) or intracellular (C). Figure 4F.PLA demonstrating protein-protein interactions of SMAD4 and ubiquitin due to ASC-CM exposure in the presence or absence of the following inhibitors: tiplaxtinin (Tip) for PAI-1, RAP for LRP1, and protease inhibitor MG132. Micrograph images showing positive PLA signal (green) for SMAD4-ubiquitin interactions. DAPI was used to stain nuclei (blue).
DOI: 10.17632/8gj97c4kgv.2
title: Genome-wide mapping of therapeutically-relevant SARS-CoV-2 RNA structures

description: This dataset included the files for both benchmark and the structured segment in the SARS-CoV-2 genome described in the article 'Genome-wide mapping of therapeutically-relevant SARS-CoV-2 RNA structures'. The description of the methods followed is available in the article in detail. Each directory and sub-directory has individual descriptions.
DOI: 10.17632/p4znxw733s.1
title: Brand Switching Intention in Collaborative Consumptions Apps: moderating effects of perceived price

description: Data used in a SEM model. Data was collected using Google Forms. Raw data collected is in portuguese, due to the fact that data collection model was applied in Brazil. Indicators 1 to 4 formed brand dependence construct. 5 to 7 formed brand parity construct. 8 to 10 formed distrust construct. 11 to 13 formed sense of community construct. 14 to 16 formed brand switching intention construct. In the final article, construct distrust was discarded, still in early in development, due to poor model fit, and was never tested in the final model. For data collection, the instrument used was a fully structured questionnaire, with a ten-point likert scale. The target population of this study are Brazilian students that already have used a collaborative consumption transport app. They were selected from a filter question "Have you ever used any transport app?". In order to investigate perceived price as a moderating variable, the questionnaire was divided into two questionnaire options, questionnaire A or B. Questionnaire A started with the following sentence “When answering the questions, consider that you are an Uber user, but competitors app (99Pop, Cabify) are cheaper than Uber.” Questionnaire B, on the other hand, did not contain any price indication for individuals when answering the questionnaire. In the raw database, the indicators repeat themselves because there are two questionnaires (A or B). All responses were later moved to a single column, in order to run the analyses. Hypthoteses of the model: H1: Brand parity positively impacts brand switching intention. H2: Brand dependence negatively impacts brand switching intention. H3: Sense of community negatively impacts brand switching intention. H4: Perceived price has a significant influence on the relationship between brand parity and brand switching intention. H5: Perceived price has a significant influence on the relationship between brand dependence and brand switching intention. H6: Perceived price has a significant influence on the relationship between the sense of community and brand switching intention. Three hundred fifty-one valid responses were collected, with the results indicating that brand parity construct positively influences consumer's brand switching intention, while brand dependence and sense of community constructs negatively influence brand switching intention. It was also identified that perceived price, in general, influence those established relationships, with the exception of brand parity towards brand switching intention.
DOI: 10.6084/m9.figshare.12311210
title: Testing the utility of multivariate techniques in mapping commercial forest species using freely available Landsat 8 Operational Land Imager (OLI)

description: Reliable species discrimination remains essential for the management of commercial forests. Therefore, this study sought to evaluate the utility of Partial Least Squares Linear Discriminant Analysis (PLS-LDA) and Partial Least Squares-Discriminant Analysis (PLS-DA) multivariate techniques for delineating forest species using Landsat 8 OLI. PLS-LDA produced a higher (88.9%) overall accuracy compared to the PLS-DA (79%). The high performance of PLS-LDA is associated with its ability to deal with correlation and variability between and within classes, hence offer great potential for the monitoring and management of commercial forest species.
DOI: 10.6084/m9.figshare.12311210.v1
title: Testing the utility of multivariate techniques in mapping commercial forest species using freely available Landsat 8 Operational Land Imager (OLI)

description: Reliable species discrimination remains essential for the management of commercial forests. Therefore, this study sought to evaluate the utility of Partial Least Squares Linear Discriminant Analysis (PLS-LDA) and Partial Least Squares-Discriminant Analysis (PLS-DA) multivariate techniques for delineating forest species using Landsat 8 OLI. PLS-LDA produced a higher (88.9%) overall accuracy compared to the PLS-DA (79%). The high performance of PLS-LDA is associated with its ability to deal with correlation and variability between and within classes, hence offer great potential for the monitoring and management of commercial forest species.
DOI: 10.6084/m9.figshare.12854264
title: Regional and topographic growth variation among 45-year-old clonal plantations of <i>Cryptomeria japonica</i>: effects of genotype and phenotypic plasticity

description: Success of clonal tree plantations depends on genotype as well as phenotypic plasticity, which determines acclimation potential of individual trees to different environmental conditions. Short-term acclimation of genotypes to local growing conditions can be tested using clonal trials, but stand productivity and yield depends on the ability of the genotype to acclimate to long-term environmental variation. In Japan, clonal plantations of <i>Cryptomeria japonica</i> (Thunb. ex L. f.) D. Don are common and many elite clones have been developed. We evaluated growth of clonal <i>C. japonica</i> plantations in 45-year-old clonal trials taking into account effects of both genotype, environment and their interaction (i.e., phenotypic plasticity). In all five sites, tree sizes were larger for clonal cultivars evaluated initially as “early-growth type” than for the “late-growth type” cultivars. All cultivars showed decrease in tree height from lower to upper slope. The differences in tree growth among cultivars were more marked in sites where trees grew well, suggesting poor site conditions prevented the early-growth cultivars from fully exploiting their growth potential. Phenotypic plasticity of each cultivar was evaluated as growth variation among sites (regional variation) and along slope within sites (topographic variation). Plasticity was observed at both regional and topographic scales and cultivars with higher plasticity generally grew larger. The result of our study suggested that genotypes with greater phenotypic plasticity may possess greater acclimation potential, enabling them to grow well under a wide range of environmental conditions.
DOI: 10.17632/f6tb3csgjt.1
title: A therapeutic non-self-reactive SARS-CoV-2 antibody protects from lung pathology in a COVID-19 hamster model. Kreye et al

description: Supplementary information for "A therapeutic non-self-reactive SARS-CoV-2 antibody protects from lung pathology in a COVID-19 hamster model", Kreye, Reincke, Kornau et al. 2020. Abstract The emergence of SARS-CoV-2 led to pandemic spread of coronavirus disease 2019 (COVID-19), manifesting with respiratory symptoms and multi-organ dysfunction. Detailed characterization of virus-neutralizing antibodies and target epitopes is needed to understand COVID-19 pathophysiology and guide immunization strategies. Among 598 human monoclonal antibodies (mAbs) from ten COVID-19 patients, we identified 40 strongly neutralizing mAbs. The most potent mAb CV07-209 neutralized authentic SARS-CoV-2 with IC50 of 3.1 ng/ml. Crystal structures of two mAbs in complex with the SARS-CoV-2 receptor-binding domain at 2.55 and 2.70 Å revealed a direct block of ACE2 attachment. Interestingly, some of the near-germline SARS-CoV-2 neutralizing mAbs reacted with mammalian self-antigens. Prophylactic and therapeutic application of CV07-209 protected hamsters from SARS-CoV-2 infection, weight loss and lung pathology. Our results show that non-self-reactive virus-neutralizing mAbs elicited during SARS-CoV-2 infection are a promising therapeutic strategy. Table S1. Description of patient cohort. Table S2. Immunoglobulin sequence and functional screening data of all isolated mAbs. Table S3. Biophysical and functional characterization of the 18 most potent SARS-CoV-2 neutralizing mAbs. Table S4. X-ray data collection and refinement statistics. Table S5. Hydrogen bonds and salt bridges identified at the antibody-RBD interface using the PISA program. Table S6. Histopathological scoring of lung tissue from COVID-19 hamster model.
DOI: 10.17632/k8t5z6ys3y.5
title: Osteometric measurements of the radius in the Coimbra Identified Skeletal Collection
DOI: 10.17632/g49zwsy2wc.1
title: Anaesthesia for Emergency Surgical Patients with Co-existing Hypertension: a Clinical Challenge

description: This study was a retrospective audit review of anaesthetic charts, case notes and operation records of patients that were operated at the accident and emergency (A&E) theatre of a tertiary hospital in the North-West region of Nigeria over a 6 months period. Patient’s age, sex, type of surgery and anaesthetic technique were collated. Data obtained were expressed as numbers and percentages. A total number of 270 patients had emergency surgery during the study period. Males constituted 140 (51.9%) of patients. Paediatric surgery had the highest number with 88 (32.6%) of patients followed by general surgery which had 70 (25.9%) patients. Gynaecological surgery had the lowest number of 10 (3.7%) patients as shown in Table 1. Forty (14.8%) of patients operated during the period had high blood pressure (&gt;140/90mmHg). Twelve of the hypertensive patients (30%) had urological operations followed by general surgical procedures with 11 patients (27.5%). Four patients (10%) had gynaecological surgery (Table 2). The technique of anaesthesia used for the hypertensive patients are as shown in Table 3.
DOI: 10.17632/9phzkmbv9y.2
title: A Non-canonical PDK1-RSK Signal Diminishes Pro-caspase-8-mediated Necroptosis-Blockade. Yang et al

description: Unprocessed and uncompressed imaging data for manuscript "A Non-canonical PDK1-RSK Signal Diminishes Pro-caspase-8-mediated Necroptosis-Blockade".
DOI: 10.17632/jr23ccpp46.3
title: Supplementary datasets and R scripts for: "Image-based Screen Capturing Misfolding Status of Niemann-Pick type C1 Identifies Potential Candidates for Chaperone Drugs"

description: Supplementary datasets and R scripts for "Image-based Screen Capturing Misfolding Status of Niemann-Pick type C1 Identifies Potential Candidates for Chaperone Drugs". This dataset contains; - Raw data and R script for colocalization analysis - An example R script and an example dataset for the quantification of Filipin staining assay. - An example R script and an example dataset for the image-based NPC1 chaperone screen. - Raw, uncropped gel images used in the accompanying manuscript. - Quantitative data used to prepare plots presented in the manuscript, including the processed screening result (as a data table).
DOI: 10.17632/b7bc9y232m.1
title: Data Acquired by a Single Object Sensor (IMU) of Table Tennis Forehand Strokes

description: The sensory data were collected from a total of 16 Table Tennis players mixed gender, aged between 19 and 38 years, who used the IMU mounted Racket. We considered the Basic, Topspin, and Push as the sample type of performed Forehand strokes. The Table Tennis Forehand strokes quality evaluation values were collected from a total of 3 Table Tennis highly educated and ranked coaches who manually scored the performed strokes based on the experiment evaluation metrics. The players used the IMU mounted racket when samples were collecting. Each subject's performance was evaluated, scored, and labeled by the coaches who placed around Table Tennis's table. Acquiring simultaneously by the Racket, the strokes' evaluation metrics values, and their labels, each player carried out a predetermined stroke performing protocols when data was gathering. Capturing order of the samples are: 1) the players started performing strokes, 2) paused for five seconds by the coaches at the end of each stroke performing, 3) stored the sensory data by the software into a single CSV file, 4) labeled and scored the players' performance by the coaches manually.
DOI: 10.6084/m9.figshare.12964721
title: Red deer and sika 50K SNPchip data

description: SNPchip data for 513 deer genotyped from Kintyre Scotland.
DOI: 10.6084/m9.figshare.12964721.v1
title: Red deer and sika 50K SNPchip data

description: SNPchip data for 513 deer genotyped from Kintyre Scotland.
DOI: 10.6084/m9.figshare.12964832.v1
title: Species trees that include Halanaeroarchaeum sulfurireducens

description: These are the Bayesian and Maximum Likelihood species trees that include Halanaeroarchaeum sulfurireducens. This taxon was removed from the phylogenomics datasets used for the final trees seen in the paper, because its inclusion destabilized Haloarchaea topology.<br>
DOI: 10.6084/m9.figshare.11692038
title: Ammonia emission from agricultural synthetic nitrogen fertilizer use in the contiguous U.S. during 1900-2015: a set of gridded time-series data

description: The increasing demands of food and biofuel promote century-long cropland expansion and nitrogen (N) fertilizer management development in the United States. However, the role of such long-term reshaping agricultural system in influencing the spatiotemporal and seasonal pattern of Ammonia (NH<sub>3</sub>) emission remains poorly understood. By using an empirical model driven by time-series data sets of environmental forcing, such as climate variability, soil properties, land use and cover changes, and agricultural N fertilizer management practices, we have estimated monthly ammonia emissions from synthetic nitrogen fertilizer uses in the contiguous U.S. during 1900 to 2015. For ease of access, we have resampled the original 1km × 1 km data set to a resolution of 5 km × 5 km. This data set can serve to facilitate national and regional air quality modeling and nitrogen budget assessment.
DOI: 10.6084/m9.figshare.11692038.v2
title: Ammonia emission from agricultural synthetic nitrogen fertilizer use in the contiguous U.S. during 1900-2015: a set of gridded time-series data

description: The increasing demands of food and biofuel promote century-long cropland expansion and nitrogen (N) fertilizer management development in the United States. However, the role of such long-term reshaping agricultural system in influencing the spatiotemporal and seasonal pattern of Ammonia (NH<sub>3</sub>) emission remains poorly understood. By using an empirical model driven by time-series data sets of environmental forcing, such as climate variability, soil properties, land use and cover changes, and agricultural N fertilizer management practices, we have estimated monthly ammonia emissions from synthetic nitrogen fertilizer uses in the contiguous U.S. during 1900 to 2015. For ease of access, we have resampled the original 1km × 1 km data set to a resolution of 5 km × 5 km. This data set can serve to facilitate national and regional air quality modeling and nitrogen budget assessment.
DOI: 10.6084/m9.figshare.12964832
title: Species trees that include Halanaeroarchaeum sulfurireducens

description: These are the Bayesian and Maximum Likelihood species trees that include Halanaeroarchaeum sulfurireducens. This taxon was removed from the phylogenomics datasets used for the final trees seen in the paper, because its inclusion destabilized Haloarchaea topology.<br>
DOI: 10.6084/m9.figshare.12964832.v3
title: Species trees that include Halanaeroarchaeum sulfurireducens

description: These are the Bayesian and Maximum Likelihood species trees that include Halanaeroarchaeum sulfurireducens. This taxon was removed from the phylogenomics datasets used for the final trees seen in the paper, because its inclusion destabilized Haloarchaea topology.<br>
DOI: 10.6084/m9.figshare.12964832.v2
title: Species trees that include Halanaeroarchaeum sulfurireducens

description: These are the Bayesian and Maximum Likelihood species trees that include Halanaeroarchaeum sulfurireducens. This taxon was removed from the phylogenomics datasets used for the final trees seen in the paper, because its inclusion destabilized Haloarchaea topology.<br>
DOI: 10.17632/bvwzxyptsk.1
title: Economic Data

description: Graph, map and compare more than 1,000 time series indicators from the World Development Indicators.
DOI: 10.17632/j5gsvv4jw3.1
title: Assessment of Households' Spatial Access to Water Points in Dodoma Rural Wards

description: Household size for the nine studied Wards, Mbalawala, Chihanga, Msalato, Hombolo, Kikombo, Mkonze, Mbabala, Mpunguzi and Nzuguni were extracted from a 2012 population and housing census carried out by the National Bureau of Statistics (NBS) of Tanzania.
DOI: 10.17632/jcyc7kkhcb.1
title: Root mass in the forests along two strong pollution gradients

description: Root mass was assessed along two strong pollution gradients caused by two copper smelters, located in different regions of the Urals (Russia) in the forest litter and upper mineral soil layer (0–20 cm) at 57 sample plots (total, 570 sample points). The roots were divided into two diameter fractions: &lt;2.0 mm (fine roots) or &gt;2.1 mm (coarse roots). Copper concentration values in litter are also given.
DOI: 10.17632/pwgdfd88cy.2
title: Data for: Sensory perception in autism: An fMRI ALE meta-analysis
DOI: 10.17632/w259b5ggxg.1
title: ELAV and FNE determine neuronal transcript signatures through EXon-Activated Rescue. Carrasco et al.
DOI: 10.17632/9s3jty3wxm.1
title: Raw data

description: Raw data for western blot.
DOI: 10.17632/4bxvz2vzs4.1
title: Awareness of Physiotherapy intervention among medical practitioner of utter pardesh

description: Background: Physiotherapy is a kind of science that helps and supports the patient to live a healthy lifestyle. Physiotherapy working in India, the main source of reference is a medical practitioner. Physiotherapy is defined as a health care professionals dealing with human mobility and function maximizing the quality of one’s life and movement strength within the loop of prevention, promotion, treatment/intervention, habilitation, and rehabilitation. Still, there are people who aren’t aware of the kind of treatment it can provide. Hereby, the objective of this study is to know how much aware the medical practitioners are in terms of the importance and need for physiotherapy for the treatment of the patients. Materials and Methods: Apparently, an approved questionnaire was sent through a Google form link to 250 medical practitioners of Uttar Pradesh. 124 responses were received and analyzed. Out of 124, 71 of the respondents were female and 53 were male. All willing medical practitioners from different streams along with graduates and super specialists were included, whereas students and non-internet users were excluded. Result: From the study, it was learned that there is awareness regarding the term physiotherapy (), but specialization in physiotherapy is less known, maximum of the subjects were aware of specialization in orthopedics and specialization in women’s health, community-based rehabilitation and dermatology is least known. 79% of the medical practitioners have an objection in physiotherapist having the first contact with the patient. Conclusion: The study revealed that there is a lack of awareness regarding assessment and treatment protocol provided by physiotherapy. However, doctors believe physiotherapist has a big role in treating ICU and immobilized patients. There is less information regarding radiation modalities as well as recent advances in rehabilitation.