cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6859781.v1
title: Supplementary Material for: Selective and Context-Dependent Social and Behavioral Effects of Δ<sup>9</sup>-Tetrahydrocannabinol in Weakly Electric Fish

description: Cannabinoid (CB) receptors are widespread in the nervous system and influence a variety of behaviors. Weakly electric fish have been a useful model system in the study of the neural basis of behavior, but we know nothing of the role played by the CB system. Here, we determine the overall behavioral effect of a nonselective CB receptor agonist, namely Δ<sup>9</sup>-tetrahydrocannabinol (THC), in the weakly electric fish <i>Apte­ronotus leptorhynchus.</i> Using various behavioral paradigms involving social stimuli, we show that THC decreases locomotor behavior, as in many species, and influences communication and social behavior. Across the different experiments, we found that the propensity to emit communication signals (chirps) and seek social interactions was affected in a context-dependent manner. We explicitly tested this hypothesis by comparing the behavioral effects of THC injection in fish placed in a novel versus a familiar social and physical environment. THC-injected fish were less likely to chirp than control fish in familiar situations but not in novel ones. The tendency to be in close proximity to other fish was affected only in novel environments, with control fish clustering more than THC-injected ones. By identifying behaviors affected by CB agonists, our study can guide further comparative and neurophysiological studies of the role of the CB system using a weakly electric fish as a model.
DOI: 10.17632/2wcm6362y8
title: Physical peat properties of lowland tropical peatland subject to wildfire

description: This dataset contains the physical peat properties from two habitat ecosystems in lowland tropical peatland, Indonesia. Totally there are 66 peat samples core. The properties include bulk density, porosity, and soil water retention. Information about the coordinate, soil depth of sampling sites, type of vegetation, sampling date, and location for sampling are provided as well. In addition, parameters of water retention curve are available for each sample.
DOI: 10.17632/v6m7br9vc3
title: Data for: Video Object Segmentation Based on Motion-Aware ROI Prediction and Adaptive Reference Updating

description: This contains experimental data for this article, including DAVIS 2017, DAVIS 2016 segmentation results and adaptive reference frame update process. In order to verify the validity of our algorithm, we also added the experimental results of the largest video object segmentation dataset YoutubeVOS.
DOI: 10.17632/v8zcf4pkb8
title: Gender-based violence

description: data from VIPAA for the presence of human rights violations, and from CEDE panel for municipalities
DOI: 10.17632/dy3z8p6gmx
title: Data for: Demographic history, range size and habitat preferences of the groundwater amphipod Niphargus puteanus (C.L. Koch in Panzer, 1836)

description: Sequence alignments and chromatograms for COI and 28S used in the study on Niphargus puteanus. Additionally, all supplementary tables and figures are embedded.
DOI: 10.17632/px62twzjm4
title: Data of carbon fiber reinforced plastics curing under complex temperature programs

description: This work is devoted to the study of CFRP hardening processes. Anisotropy assessment of ultimate strength in static bending is presented. Particularly interesting work is in the fact that the study of carbon fiber-reinforced plastic obtained by hardening in a complex temperature regime. The method of dielectric spectroscopy was used to study the curing of the composite. It was found that, due to a temperature gradient of 8 ° C, the gel point of colder prepreg layers occurs at 4.2 minutes. A method for estimating the gelation time by dielectric spectroscopy is proposed. It was found that the point of gel formation coincides with the minimum extremum on the graph of the derivative of the tangent of the dielectric loss angle versus time. In the graph of the tangent of the dielectric loss angle versus time A technique for modifying carbon fiber reinforced plastic is presented, which contributes to the achievement of uniform gelation throughout the entire thickness of the prepreg. The effect is achieved by introducing a curing catalyst in specified concentrations into various layers of the prepreg. The ultimate strength in static bending of modified CFRP increases by 1.2 times.The anisotropy of the static bending strength in the modified sample is reduced by 11.9%.
DOI: 10.17632/mgh879f6cj
title: Data for: Blast exposure predisposes the brain to increased neurological deficits in a model of blast plus blunt traumatic brain injury

description: Behavioral and neuronal cell count data for blast plus rodent injury model
DOI: 10.6084/m9.figshare.13372505.v3
title: Clustering of synthetic routes using tree edit distance

description: Results from AiZynthFinder tool that is presented in a preprint with the same name as this document. <br>The dataset can be loaded in python with:import pandas as pddata = pd.read_hdf("finder_output.hdf5", "table")
DOI: 10.6084/m9.figshare.20382238.v1
title: Impacts of pests and diseases on the decline of managed bees in Brazil: a beekeeper perspective

description: Brazilian beekeepers have experienced massive colony losses in recent years. Possible causes include bee pests and diseases, although there have been few relevant studies in the country and no official data are available. The aim of this work was to assess, from a beekeeper's perspective, the incidence of pests and diseases in colonies, and their impact on the decline of bee populations in Brazil. The research used two online questionnaires that included disease symptoms to facilitate participant identification of diseases. A total of 674 valid responses were obtained from beekeepers of <i>Apis mellifera</i> (49% of the total) and stingless bees (51%), distributed among 24 of the 27 Brazilian states. Most beekeepers observed pests (average 78.1%) and disease symptoms (65.5%) in their colonies. Based on beekeepers' responses, pests and diseases affect beehive losses in Brazil. Colony loss percentage for <i>A. mellifera</i> was higher in apiaries with ants (19.8% of colony losses) and wasps (46.7%) than in those without pests (p &lt; 0.001). While for stingless bees, meliponaries with robber bees (15.8% of colony losses), ants (14.7%), and phorid flies (12.5%) had higher colony losses than those without pests (p &lt; 0.001). Apiaries and meliponaries with worker bee deaths had higher losses than those without symptoms. The results also indicate that monitoring can reduce colony losses in apiaries and meliponaries that have some kind of pests and diseases. Using a beekeeper perspective, this study provides information about the impact that pests and pathogens have on bee losses that can be used to guide improved management practices.
DOI: 10.6084/m9.figshare.4253426.v3
title: Companion of the article on Modeling Distributed Platforms from Application Traces for Realistic File Transfer Simulation

description: Sources and supplementary data associated to the paper entitled "Modeling Distributed Platforms from Application Traces for Realistic File Transfer Simulation"
DOI: 10.17632/6p9w2ww5x4
title: Leader-follower consensus using 2-rate distributed output feedback protocol without controller interaction: Relevant Data for Numerical Example

description: This data repository contains the parameters of the controllers designed for, and some other data relevant to the numerical example in the article "Leader-follower consensus using 2-rate distributed output feedback control without controller interaction", under review in Automatica journal under the Technical Communique section.
DOI: 10.6084/m9.figshare.6988922.v1
title: Supplementary Material for: Dietary Oxidative Balance Scores and Biomarkers of Inflammation among Individuals with and without Chronic Kidney Disease

description: <b><i>Background:</i></b> Oxidative stress and inflammation are proposed mechanisms of nonspecific kidney injury and progressive kidney failure. Higher dietary oxidative balance scores (OBS) are associated with lower prevalence of chronic kidney disease (CKD). <b><i>Methods:</i></b> We investigated the association between OBS and biomarkers of inflammation using data from the Reasons for Geographic and Racial Differences in Stroke (REGARDS) study. Nutrient estimates from the Block Food Frequency Questionnaires were used to define tertiles of 11 pro- and antioxidant factors. Points for each OBS component were summed, with a higher score indicating predominance of antioxidant exposures. Multivariable linear regression models were used to estimate the association between OBS and biomarkers of inflammation (interleukin-6 [IL-6], interleukin-8 [IL-8], interleukin-10 [IL-10], fibrinogen, C-reactive protein [CRP], white blood cell count, and cystatin C). An interaction term was included to determine if associations between OBS and inflammatory markers differed between individuals with and without CKD. <b><i>Results:</i></b> Of 682 participants, 22.4% had CKD. In adjusted models, OBS was associated with CRP and IL-6. For every 5-unit increase in OBS, the CRP concentration was –15.3% lower (95% CI: –25.6, –3.6). The association of OBS with IL-6 differed by CKD status; for every 5-unit increase in OBS, IL-6 was –10.7% lower (95% CI: –16.3, –4.7) among those without CKD, but there was no association among those with CKD (<i>p</i> = 0.03). <b><i>Conclusion:</i></b> This study suggests that a higher OBS is associated with more favorable levels of IL-6 and CRP, and that the association of OBS and IL-6 may be modified by CKD status.
DOI: 10.17632/5cjmzj9jwm
title: TBPLaS: A tight-binding package for large-scale simulation

description: TBPLaS is an open-source software package for the accurate simulation of physical systems with arbitrary geometry and dimensionality utilizing the tight-binding (TB) theory. It has an intuitive object-oriented Python application interface (API) and Cython/Fortran extensions for the performance-critical parts, ensuring both flexibility and efficiency. Under the hood, numerical calculations are mainly performed by both exact diagonalization and the tight-binding propagation method (TBPM) without diagonalization. Especially, the TBPM is based on the numerical solution of the time-dependent Schrödinger equation, achieving linear scaling with system size in both memory and CPU costs. Consequently, TBPLaS provides a numerically cheap approach to calculate the electronic, optical, plasmon and transport properties of large tight-binding models with billions of atomic orbitals. Current capabilities of TBPLaS include the calculations of band structure, density of states, local density of states, quasi-eigenstates, optical conductivity, electrical conductivity, Hall conductivity, polarization function, dielectric function, plasmon dispersion, carrier mobility and velocity, localization length and free path, topological invariant, wave-packet propagation, etc. All the properties can be obtained with only a few lines of code. Other algorithms involving tight-binding Hamiltonians can be implemented easily due to the extensible and modular nature of the code. In this paper, we discuss the theoretical framework, implementation details and common workflow of TBPLaS, and give a few demonstrations of its applications.
DOI: 10.17632/j8r24rz6kz
title: Supplemental material for: "Analysis of real-world treatment patterns in patients with prurigo nodularis"

description: Supplemental Text and Supplemental Table
DOI: 10.17632/myxyfnmxzw
title: FC-CoMIcs (Fuel Cell Corpus for Materials Informatics)

description: We provide model-generated annotations extracted from the literature. This corpus contains automatically extracted annotations from ~1000 scientific articles related to Oxygen Reduction Reaction (ORR) catalysts for fuel cells. The annotations were generated using our trained Named Entity Recognition (NER) and Relation Extraction (RE) model. FC-CoMIcs is the corpus that can contribute to the advancement of Materials Informatics (MI) studies, particularly in the field of polymer electrolyte fuel cell.

The dataset includes a text file listing the DOIs of the annotated articles, along with the corresponding Brat annotation files (.ann), which contain the extracted entities and relationships. The annotations follow a standard annotation scheme, ensuring usability for both Natural Language Processing (NLP) and fuel cell research.
DOI: 10.17632/z2n73gkxgm
title: CA-TIG welding of Inconel 718 alloy

description: ANOVA Test results for empirical relationships developed to predict tensile properties of welded joints
DOI: 10.6084/m9.figshare.12624794.v1
title: Antidiabetic, protective and islet regenerative capability of Dillenia excelsa in alloxan induced diabetic rats

description: This data describes the findings from the study conducted to determine the anti-diabetic and islet regenerative capabilities of the plant extract, Dillenia excelsa. The mean blood glucose readings of the respective animals in the selected groups and ratios of islet to tissue sizes are also included here.
DOI: 10.17632/p4h8w2hmwm
title: Data For: Consultant Assignment and Routing Problem with Priority

description: The CARPP problem aims to simultaneously assign consultants to clients and determine the traveling routes. The features of the problem are listed as follows. The consulting activities must be performed face-to-face at the client site. Therefore, consultants travel to almost all client assignments to fulfill their jobs. The objective is to minimize the incurred airfares and the consultants’ wages. Consultants are proficient in different skills and they can only fill demands requiring the relevant skill. The skills cannot be easily replicated or cross-trained. In addition, priority requirement has to be matched before assigning consultants to clients. To avoid dissatisfaction from consultants, the maximum number of flying trips should not exceed four for each consultant per week. The CARPP problem does not consider time window because the specific working time is determined by consultants and clients.
DOI: 10.17632/mkn7j24fdz
title: Journal of Studies in Islam and Psychology; No. 6

description: The main objective of Studies in Islam and Psychology is to provide an intellectual platform for national and international researchers to discuss their most recent findings related to Islamic psychology and counseling. By doing so, the journal hopes to improve the status of the field in Iran and in the world and to find solutions to theoretical and practical problems the profession is faced with. To serve this purpose, researchers are encouraged to submit their unpublished, original, full-length papers for potential publication in the journal. 

The journal is set to publish original articles on a wide range of issues including;

 The philosophy of psychology with a critical outlook from the perspective of Islam;
 The uses of psychology in the service of the Islamic society and its needs;
 The formation of psychology in the Islamic society;
 Psychological analysis of Islamic concepts in areas such as:
 1. Anthropology, such as: banned, impatience, hasty, captious, pious, faithful;
 2. Belief, such as: God, resurrection, Imamate, intercession, Paradise, Hell and ...;
 3. Value, such as: repentance, trust, self-esteem, mental relaxation, grief, fear;
 4. Practical instructions of Islam, such as: qisas (retaliation), prayers, inheritance, hajj, khums (one fifth);
 Study of psychological findings from Islamic perspective in terms of critique, confirmation and completion, alternative presentation, presentation of new theory;

To let individual researchers and libraries have access to the most recent research findings in the field, the journal allows open-access to its articles. This journal utilizes the Magiran and Noormags preservation systems to create a distributed archiving system for individual and libraries and to permit libraries stakeholders to create permanent archives of the journal.
DOI: 10.6084/m9.figshare.19193243.v2
title: Historical Redlining is Associated with Present-Day Air Pollution Disparities in U.S. Cities − Extended Data Files

description: Full dataset, including air pollution and population data by census block and historical redlining grade [HOLC.all.20220304.csv; README.HOLC.all.txt], and calculated population weighted means [HOLC.pwms.20220304.csv] developed for the analysis presented in "Historical redlining is associated with present-day air pollution disparities in U.S. cities" (Lane, et al. 2022).
DOI: 10.15468/dl.c2vb6z
title: Occurrence Download

description: A dataset containing 1701 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leptadenia pyrotechnica (Forssk.) Decne.",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Occurrence evidence)"
 ]
}

 The dataset includes 1701 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009322-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27958830.v1
title: Supplementary Material for: Treatment duration of adjuvant immune checkpoint inhibitors in hepatocellular carcinoma patients at high risk of recurrence after resection: A prospective, multicentric cohort study

description: Introduction: Adjuvant immune checkpoint inhibitors (ICIs) may improve recurrence-free survival (RFS) in patients with hepatocellular carcinoma (HCC). This study evaluated the effects of adjuvant ICI treatment duration on RFS and overall survival (OS) among patients with HCC at high risk of recurrence.
Methods: The RFS and OS of patients from three centers who received either adjuvant ICI therapy or active surveillance after curative hepatic resection between January 1, 2019 and December 31, 2023 were analyzed. Further analysis was performed to evaluate the effects of ICI treatment duration on RFS and OS.
Results: A total of 1271 patients were included, of whom 1032 (81.2%) received active surveillance and 239 (18.8%) received adjuvant ICI therapy. The median RFS in the adjuvant therapy cohort was 22.6 months (95% CI 18.3–26.9), significantly higher than the RFS of 19.1 months (95% CI 16.4–21.4) in the active surveillance cohort (HR 0.79; 95% CI 0.66–0.95; p = 0.019). The median OS was not reached for either group, but OS tended to be better in the adjuvant therapy cohort than in the active surveillance group (HR 0.72, 95%CI 0.54–0.94; p = 0.010). Similar results were obtained after propensity score matching. Among patients who received adjuvant ICI therapy, those who received it for longer than 6 months had slightly higher RFS (HR 0.66; 95% CI 0.42–1.04; p = 0.071) and OS (HR 0.59; 95% CI 0.30–1.17; p = 0.128) than those who received it for up to 6 months.
Conclusions: Adjuvant ICI therapy significantly improves the prognosis of patients with HCC at high risk of recurrence after curative resection. Six months of adjuvant ICI treatment may be insufficient.
DOI: 10.6084/m9.figshare.3519218.v1
title: Appendix B. A figure showing meta-analysis on the crop rotation effect on bulk density.

description: A figure showing meta-analysis on the crop rotation effect on bulk density.
DOI: 10.17632/66hzbnt4hf
title: Data0406

description: The Impact of Global Climate Change on Sea Cucumbers
DOI: 10.6084/m9.figshare.3512552.v1
title: Appendix B. Results of a Kruskal-Wallis test of mean rank comparing vitality across buffer and undisturbed stream edges with respect to disturbance treatment and location on the transect.

description: Results of a Kruskal-Wallis test of mean rank comparing vitality across buffer and undisturbed stream edges with respect to disturbance treatment and location on the transect.
DOI: 10.17632/58gr5f55pc
title: Data for: Device Simulations: Toward the design of &gt;13% Efficient PbS Colloidal Quantum Dot Solar Cell

description: Problem definition file and absorption files to replicate the findings reported in the current study.
DOI: 10.17632/5fjktgc6g7
title: The early-mid Miocene abyssal brown/green claystone from IODP Site U1503A in the northern South China Sea: implications for paleoclimate and paleoceanography

description: grain size, clay mineral and geochemistry data
DOI: 10.17632/t423c85cf9
title: Data for: Can relict-rich communities be of an anthropogenic origin? Palaeoecological insight into conservation strategy for endangered Carpathian travertine fens

description: The Excel files with original data.
DOI: 10.6084/m9.figshare.24756537.v1
title: Supplementary Material for: Advanced Glycation End Products-induced Activation of Keratinocytes: a Mechanism Underlying Cutaneous Immune Response in Psoriasis

description: Psoriasis is a common inflammatory skin disease, in which epidermal keratinocytes play a vital role in its pathogenesis via acting both as the responder and as the accelerator to the cutaneous psoriatic immune response. Advanced glycation end products (AGEs) are a class of proinflammatory metabolites that are commonly accumulating in cardiometabolic disorders. Recent studies have also observed increased level of AGEs in the serum and skin of psoriasis patients, but the role of AGEs in psoriatic inflammation has not been well investigated. In the present study, we initially detected abnormal accumulation of AGEs in epidermal keratinocytes of psoriatic lesion collected from psoriasis patients. Furthermore, AGEs promoted the proliferation of keratinocytes via up-regulated Keratin 17 (K17)-mediated p27KIP1 inhibition followed by accelerated cell cycle progression. More importantly, AGEs facilitated the production of interleukin-36 alpha (IL-36α) in keratinocytes, which could enhance T helper 17 (Th17) immune response. In addition, the induction of both K17 and IL-36α by AGEs in keratinocytes was dependent on the activation of signal transducer and activator of transcription 1/3 (STAT1/3) signaling pathways. At last, the effects of AGEs on keratinocytes were mediated by receptor for AGEs (RAGE). Taken together, these findings support that AGEs potentiate the innate immune function of keratinocytes, which contributes to the formation of psoriatic inflammation. Our study implicates AGEs as a potential pathogenic link between psoriasis and cardiometabolic comorbidities.
DOI: 10.6084/m9.figshare.24961908.v1
title: Data from: Comparative analysis of models in predicting the effects of SNPs on TF-DNA binding using large-scale in vitro and in vivo data

description: Noncoding variants associated with complex traits can alter the motifs of transcription factor (TF)-DNA binding. Although many computational models have been developed to predict the effects of noncoding variants on TF binding, their predictive power lacks systematic evaluation. Here we have evaluated 14 different models built on position weight matrices (PWMs), support vector machine (SVM), ordinary least squares (OLS) and deep neural networks (DNN), using large-scale in vitro (i. e. SNP-SELEX) and in vivo (i. e. allele-specific binding, ASB) TF binding data. The SNP-SELEX data used in this study were collected from the GVAT database (http://renlab.sdsc.edu/GVATdb/), and the ASB data were collected from the ADASTRA database (https://adastra.autosome.org/bill-cipher/downloads). This dataset contains following files.SNP-SELEX_firstbatch_evaldata_positive_data.txt.gz: SNP-SELEX, first batch, positive setSNP-SELEX_firstbatch_evaldata_negative_data.txt.gz: SNP-SELEX, first batch, negative setSNP-SELEX_novelbatch_evaldata_positive_data.txt.gz: SNP-SELEX, novel batch, positive setSNP-SELEX_novelbatch_evaldata_negative_data.txt.gz: SNP-SELEX, novel batch, negative setASB_evaldata_positive_data.txt.gz: ASB, positive setASB_evaldata_negative_data.txt.gz: ASB, negative setSNP-SELEX_AUROC_AUPRC.xlsx: AUROC and AUPRC of 14 models based on SNP-SELEXASB_AUROC_AUPRC.xlsx: AUROC and AUPRC of 14 models based on ASB<br>