cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2sf8vk
title: Occurrence Download

description: A dataset containing 21017 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Myophonus insularis",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 21017 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077301-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j7kgbu
title: Occurrence Download

description: A dataset containing 5696 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Agrostis schraderiana Bech."
 ]
}

 The dataset includes 5696 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020029-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t39umt
title: Occurrence Download

description: A dataset containing 516 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Acorus calamus L."
 ]
}

 The dataset includes 516 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108092-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ryxtsz
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alstroemeria aulica Ravenna"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016401-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x88ajx
title: Occurrence Download

description: A dataset containing 187 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Grallaricula loricata (P.L.Sclater, 1857))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 187 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020031-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jy3rp2
title: Occurrence Download

description: A dataset containing 286 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Myophonus melanurus",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 286 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077307-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8vyxk9
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alchemilla barbatiflora Juz."
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008100-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pv744r
title: Occurrence Download

description: A dataset containing 19663 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Oryza sativa L."
 ]
}

 The dataset includes 19663 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016400-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26078/d301-498f
title: Data accompanying "Landscape composition surrounding restoration projects modulates use by wildlife: a case study of mule deer in Utah"

description: With mule deer (Odocoileus hemionus), hereafter, deer, populations in decline, wildlife managers have increased their efforts to improve factors that limit population growth. In the State of Utah (hereafter, Utah), these efforts have included habitat restoration which is expected to improve environmental conditions for deer. Some of these efforts include pinon-juniper removal, prescribed burning, and spraying of invasive plant species. Although previous work has demonstrated the local impacts of restoration on deer populations, it is unknown how the environmental conditions in the landscape surrounding restoration treatments may modify local restoration impacts. Identifying how both local and landscape-scale conditions influence deer response to habitat restoration would ensure valid inference, and enable spatially-precise management recommendations. Our objective was to identify the scale-specific environmental drivers that influence mule deer seasonal use of 8 types of restoration projects using data from 1,936 GPS-collared deer from 2015-2021, and 813 treatment sites. Our findings showed that the abundance of collared deer on restoration sites is related to both the type of restoration treatment examined, and patterns of landcover composition surrounding restoration sites at 1, 5, 10, and 20km spatial scales. While High Elevation Fire Rehabilitation and Sagebrush Restoration treatments, and Pinyon-juniper Removal treatments had the highest relative use during summer, and winter, respectively, use of treatments during winter was greater in landscapes containing additional treatment sites. We found that during winter, relative use across all treatment types was higher when restoration projects were sited within 10-20km of Pinyon-Juniper Removal treatments with and without seeding. Restoration projects that were not sited in proximity of Aspen restoration or Low Elevation Fire Rehabilitation sites also had higher estimated use during winter. Together, our analyses can provide decision support for determining the optimal locations for future restoration treatments to strategically design landscapes expected to support the highest relative use by focal wildlife.
DOI: 10.26078/6354-a652
title: Data and code used for the manuscript, "Robust native aquatic plant propagule banks limit curly-leaved pondweed"

description: The relationship between the invasive curly-leaf pondweed (CLP) and native aquatic plants was explored via a sixteen month mesocosm experiment and annual surveys of the passive revegetation of the newly restored Provo River Delta (Utah, USA) (PRD). These studies took place in 2023 and 2024.
DOI: 10.7910/dvn/dc3mjh
title: dDRTC MS Raw Files

description: Raw MS files for the dDRTC publication.
DOI: 10.5281/zenodo.17545432
title: Mitochondrial position responds to glucose stimulation in a model of the pancreatic beta cell
DOI: 10.34740/kaggle/dsv/13639488
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.16406723
title: Data supporting: Harbor-induced tidal salinity dispersion in partially stratified estuaries

description: Data supporting: Harbor-induced tidal salinity dispersion in partially stratified estuaries





Observations




Hydrodynamic Model Output




Visualization Scripts
DOI: 10.5281/zenodo.16406724
title: Data supporting: Harbor-induced tidal salinity dispersion in partially stratified estuaries

description: Data supporting: Harbor-induced tidal salinity dispersion in partially stratified estuaries





Observations




Hydrodynamic Model Output




Visualization Scripts
DOI: 10.13140/rg.2.2.26380.37764
title: Computing Missing Values in Data
DOI: 10.6084/m9.figshare.5457430
title: Extending <i>R</i> with C++: A Brief Introduction to Rcpp

description: R has always provided an application programming interface (API) for extensions. Based on the <i>C</i> language, it uses a number of macros and other low-level constructs to exchange data structures between the R process and any dynamically loaded component modules authors added to it. With the introduction of the <i>Rcpp</i> package, and its later refinements, this process has become considerably easier yet also more robust. By now, <i>Rcpp</i> has become the most popular extension mechanism for R. This article introduces <i>Rcpp</i>, and illustrates with several examples how the <i>Rcpp Attributes</i> mechanism in particular eases the transition of objects between R and C++ code. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.5457430.v1
title: Extending <i>R</i> with C++: A Brief Introduction to Rcpp

description: R has always provided an application programming interface (API) for extensions. Based on the <i>C</i> language, it uses a number of macros and other low-level constructs to exchange data structures between the R process and any dynamically loaded component modules authors added to it. With the introduction of the <i>Rcpp</i> package, and its later refinements, this process has become considerably easier yet also more robust. By now, <i>Rcpp</i> has become the most popular extension mechanism for R. This article introduces <i>Rcpp</i>, and illustrates with several examples how the <i>Rcpp Attributes</i> mechanism in particular eases the transition of objects between R and C++ code. Supplementary materials for this article are available online.
DOI: 10.5281/zenodo.17545695
title: Size and dispersal-related traits have not evolved, but warmer developmental temperatures have implications for movement of Pieris rapae butterflies in urban landscapes

description: Data files

This dataset contains four files for “Size and dispersal-related traits have not evolved, but warmer developmental temperatures have implications for movement of Pieris rapae butterflies in urban landscapes”

Mass_2019.csv contains data on the dried body mass of F1 butterflies from Experiment 1 (2019).

Mass_2022.csv contains data on the total dried body mass and the body mass of body segments (head, thorax, abdomen) of F1 butterflies from Experiment 2 (2022).

Wingarea_2019.csv contains data on the area of the wing surfaces of F1 butterflies from Experiment 1 (2019).

Wingarea_2022.csv contains data on the area of the wing surfaces of F1 butterflies from Experiment 2 (2022). Details on the experiments and data generation can be found in the associated publication.

 

Variable definitions

ID: identification code of F1 butterfly

temp_treat: average temperature in °C experienced during development for F1 offspring

sex: sex of F1 butterfly (F = female, M = male)

mom: identification code of the female mother in the parental generation

location: site name where the parental generation mother was caught

urb_level: three-level factor (low, med, high) describing the urbanization level of the location where the mother was caught

mass_mg: dried total body mass of the F1 offspring in milligrams

mass_head_mg: dried mass of the head body segment of F1 offspring in milligrams (only in Mass_2022.csv).

mass_thorax_mg: dried mass of the thorax body segment of F1 offspring in milligrams (only in Mass_2022.csv).

mass_abdomen_mg: dried mass of the thorax body segment of F1 offspring in milligrams (only in Mass_2022.csv).

wing:  the type of wing being measured (fore = forewing, hind = hindwing)

side: the side of the body that the wing is from (R = right, L = left; only in Wingarea_2022.csv)

area_cm2: the area of the focal wing of F1 offspring in centimeters squared

year – year of experiment
DOI: 10.5281/zenodo.17545696
title: Size and dispersal-related traits have not evolved, but warmer developmental temperatures have implications for movement of Pieris rapae butterflies in urban landscapes

description: Data files

This dataset contains four files for “Size and dispersal-related traits have not evolved, but warmer developmental temperatures have implications for movement of Pieris rapae butterflies in urban landscapes”

Mass_2019.csv contains data on the dried body mass of F1 butterflies from Experiment 1 (2019).

Mass_2022.csv contains data on the total dried body mass and the body mass of body segments (head, thorax, abdomen) of F1 butterflies from Experiment 2 (2022).

Wingarea_2019.csv contains data on the area of the wing surfaces of F1 butterflies from Experiment 1 (2019).

Wingarea_2022.csv contains data on the area of the wing surfaces of F1 butterflies from Experiment 2 (2022). Details on the experiments and data generation can be found in the associated publication.

 

Variable definitions

ID: identification code of F1 butterfly

temp_treat: average temperature in °C experienced during development for F1 offspring

sex: sex of F1 butterfly (F = female, M = male)

mom: identification code of the female mother in the parental generation

location: site name where the parental generation mother was caught

urb_level: three-level factor (low, med, high) describing the urbanization level of the location where the mother was caught

mass_mg: dried total body mass of the F1 offspring in milligrams

mass_head_mg: dried mass of the head body segment of F1 offspring in milligrams (only in Mass_2022.csv).

mass_thorax_mg: dried mass of the thorax body segment of F1 offspring in milligrams (only in Mass_2022.csv).

mass_abdomen_mg: dried mass of the thorax body segment of F1 offspring in milligrams (only in Mass_2022.csv).

wing:  the type of wing being measured (fore = forewing, hind = hindwing)

side: the side of the body that the wing is from (R = right, L = left; only in Wingarea_2022.csv)

area_cm2: the area of the focal wing of F1 offspring in centimeters squared

year – year of experiment
DOI: 10.5281/zenodo.17545690
title: Spatial Analysis of Roman Baths in the Pyrenees
DOI: 10.5281/zenodo.17545691
title: Spatial Analysis of Roman Baths in the Pyrenees
DOI: 10.71650/datapb/h1uk3y
title: Biodiversidade de moluscos marinhos da Paraíba, nordeste do Brasil

description: O presente dataset inclui os moluscos marinhos e estuarinos do litoral da Paraíba, nordeste do Brasil. Esta primeira versão é baseada na seleção de 1.343 lotes depositados na Coleção de Invertebrados Paulo Young (90% - CIPY/UFPB) e Coleção de Referência de Mollusca (10% - UEPB). Registros com identificações ou procedências duvidosas não foram incluídos. São apresentadas 356 espécies distribuídas em quatro classes de moluscos, sendo 228 gastrópodes, 115 bivalves, 09 poliplacóforos e 04 cefalópodes.
DOI: 10.15139/s3/z7wf9d
title: Zambia Child Grant Programme (CGP)

description: This five-wave panel was created to evaluate the impact of Zambia’s Child Grant Programme (CGP) cash transfer program. The data package contains nine longitudinal primary datasets (five community level, two household level, one individual level, and one facility level). The dataset covers a wide variety of topics including health, borrowing, remittances, consumption, housing, education, agricultural activity, livestock, and work of recipient and non-recipient households. 

If you would like to gain access to the data in this study, please go to the CPC Data Portal, which will guide you through the process and requirements: http://data.cpc.unc.edu/projects/13/view

Please DO NOT request access on Dataverse prior to submitting an application on the CPC Data Portal. 

Data is provided in STATA format. The accompanying Data Use Instructions provide information about the datasets and merging. 

The dataset is released by The Transfer Project, housed at the Carolina Population Center at the University of North Carolina – Chapel Hill. Additional information about the project not included in the Data Use Instructions can be found on The Transfer Project’s Website: https://transfer.cpc.unc.edu/ including official evaluation reports.
description: Stata, 19
DOI: 10.6084/m9.figshare.30251848
title: <i>Integrated Muscle Multi-Omics in Cancer Cachexia</i> - Supplemental files

description: Cancer cachexia is a wasting condition, primarily affecting skeletal muscle, impairing patients’ quality of life, prognosis, and survival. The molecular triggers are incompletely defined but given prior evidence for epigenetic plasticity in muscle, we speculate dysregulated DNA methylation plays a role in muscle transcriptional alterations mediating cachexia severity. We used a time course approach in a mild cachexia model (Colon-26, C26) coupled with a severe cachexia genetic model (<i>Apc</i><sup><em>Min/+</em></sup>) in both biological sexes to assess the methylome across degrees of cachexia pathology. The muscle methylome and transcriptome were analyzed separately and subsequently integrated using a computational technique to infer epigenetic control of gene expression. Male mice exhibited widespread disruptions to the transcriptome across time points while females were more protected; in severe pathophysiologic phenotypes, the magnitude of change was similar between sexes. A conserved set of inflammation-related genes were dysregulated across cachexia progression and sex, including <i>Osmr</i>, <i>Stat3, and Serpina3n</i>. Epigenetic alterations in promoter regions emerged as early as 10 days post tumor implant in C26 despite a lack of physiologic phenotype and prior to the transcriptome disruptions. Our integration analysis suggests methylome alterations as a mechanism of cachexia pathophysiology in severe phenotypes. A conserved feature across -omics layers, sexes, and conditions was dysregulated <i>Runx1 </i>and neurodegeneration-related pathways, which may indicate cachexia-mediated denervation. Overall, we provide evidence for the role of epigenetics in cachexia progression and severity, providing potential new therapeutic targets, and a valuable resource to the skeletal muscle and cachexia research communities.
DOI: 10.6084/m9.figshare.30251848.v1
title: <i>Integrated Muscle Multi-Omics in Cancer Cachexia</i> - Supplemental files

description: Cancer cachexia is a wasting condition, primarily affecting skeletal muscle, impairing patients’ quality of life, prognosis, and survival. The molecular triggers are incompletely defined but given prior evidence for epigenetic plasticity in muscle, we speculate dysregulated DNA methylation plays a role in muscle transcriptional alterations mediating cachexia severity. We used a time course approach in a mild cachexia model (Colon-26, C26) coupled with a severe cachexia genetic model (<i>Apc</i><sup><em>Min/+</em></sup>) in both biological sexes to assess the methylome across degrees of cachexia pathology. The muscle methylome and transcriptome were analyzed separately and subsequently integrated using a computational technique to infer epigenetic control of gene expression. Male mice exhibited widespread disruptions to the transcriptome across time points while females were more protected; in severe pathophysiologic phenotypes, the magnitude of change was similar between sexes. A conserved set of inflammation-related genes were dysregulated across cachexia progression and sex, including <i>Osmr</i>, <i>Stat3, and Serpina3n</i>. Epigenetic alterations in promoter regions emerged as early as 10 days post tumor implant in C26 despite a lack of physiologic phenotype and prior to the transcriptome disruptions. Our integration analysis suggests methylome alterations as a mechanism of cachexia pathophysiology in severe phenotypes. A conserved feature across -omics layers, sexes, and conditions was dysregulated <i>Runx1 </i>and neurodegeneration-related pathways, which may indicate cachexia-mediated denervation. Overall, we provide evidence for the role of epigenetics in cachexia progression and severity, providing potential new therapeutic targets, and a valuable resource to the skeletal muscle and cachexia research communities.
DOI: 10.6084/m9.figshare.30251848.v2
title: <i>Integrated Muscle Multi-Omics in Cancer Cachexia</i> - Supplemental files

description: Cancer cachexia is a wasting condition, primarily affecting skeletal muscle, impairing patients’ quality of life, prognosis, and survival. The molecular triggers are incompletely defined but given prior evidence for epigenetic plasticity in muscle, we speculate dysregulated DNA methylation plays a role in muscle transcriptional alterations mediating cachexia severity. We used a time course approach in a mild cachexia model (Colon-26, C26) coupled with a severe cachexia genetic model (<i>Apc</i><sup><em>Min/+</em></sup>) in both biological sexes to assess the methylome across degrees of cachexia pathology. The muscle methylome and transcriptome were analyzed separately and subsequently integrated using a computational technique to infer epigenetic control of gene expression. Male mice exhibited widespread disruptions to the transcriptome across time points while females were more protected; in severe pathophysiologic phenotypes, the magnitude of change was similar between sexes. A conserved set of inflammation-related genes were dysregulated across cachexia progression and sex, including <i>Osmr</i>, <i>Stat3, and Serpina3n</i>. Epigenetic alterations in promoter regions emerged as early as 10 days post tumor implant in C26 despite a lack of physiologic phenotype and prior to the transcriptome disruptions. Our integration analysis suggests methylome alterations as a mechanism of cachexia pathophysiology in severe phenotypes. A conserved feature across -omics layers, sexes, and conditions was dysregulated <i>Runx1 </i>and neurodegeneration-related pathways, which may indicate cachexia-mediated denervation. Overall, we provide evidence for the role of epigenetics in cachexia progression and severity, providing potential new therapeutic targets, and a valuable resource to the skeletal muscle and cachexia research communities.