cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16920761
title: Surface ocean metatranscriptome high-resolution time series from InVirT-19-BATS

description: This resource contains data originating from the JGI project, "Inferring virus-host interactions through multi-omics high-resolution time series" (see award and files). The sequencing project was part of the NSF project, "InVirT-19-BATS": "Inferring Cellular Lysis and Regeneration of Organic Matter by Marine Viruses," which involved sample collection in the vicinity of the Bermuda Atlantic Time Series (BATS) in October 2019 (see the BCO-DMO project page).

img_data_integration.md explains files in this record and shows how they were generated, including code which can be run as a reproducible workflow.

img_data.tsv.gz contains gene-level data from assembled metatranscriptomic transcripts. The table merges data products generated by the JGI IMG Annotation Pipeline (v5.0.23). The table includes 35 surface ocean metatranscriptomic samples with sample metadata and CTD data.

INVIRT19_metaT_metadata.txt contains metatranscriptomic sample metadata provided by Daniel Muratore that also applies to the samples in the Muratore et al. 2024 paper, "Diel partitioning in microbial phosphorus acquisition in the Sargasso Sea."

all_casts.csv, also provided by Daniel Muratore, contains cast CTD data collected concomitantly with the metatranscriptomic bottle samples.

cognames2003-2014.tab, tigr_names.txt, and ko_list.txt contain function names used in img_data.tsv.

Version 2 update: img_data_sample.xlsx is a file that adheres to Simons CMAP submission portal guidelines. dataset_meta_data.xlsx and vars_meta_data.xlsx from v1 are now tabs of this workbook.
DOI: 10.22002/1y787-t3406
title: Agrobacterium_Bald_VirB8-GFP

description: Agrobacterium tumefaciens
description: <strong>Tilt Series Date:</strong> 2013-06-25</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Patricia ZAMBRYSKI</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown in liquid medium and induced with AS for 4 days, no airation</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-25-19/rawdata/</p>bald_gfp0021.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-25-19/rawdata/bald_gfp0021.mrc"
        > <i class="download icon"></i> Download </a></p>

        bald_gfp0021_full.rec,  Reconstruction (Pixel Size 1.92 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-25-19/3dimage_27677/bald_gfp0021_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ex57w-2pa34
title: R. sphaeroides Cryosections

description: R. sphaeroides Cryosections strain 593
description: <strong>Tilt Series Date:</strong> 2013-10-23</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Rhodobacter sphaeroides</p>
<strong>Strain:</strong> ATCC 17023</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 44000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Judith Armitage</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-99/rawdata/</p>rhodosectionsatlas20047.mrc,  Tilt Series (Pixel Size 0.32 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-99/rawdata/rhodosectionsatlas20047.mrc"
        > <i class="download icon"></i> Download </a></p>

        rhodosectionsatlas20047_full.rec,  Reconstruction (Pixel Size 0.64 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-99/3dimage_33232/rhodosectionsatlas20047_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/5zbwp-e2n77
title: E. coli (FB76)

description: Contains MreB-mCherry sandwich fusion as sole source of MreB from WT promoter.
description: <strong>Tilt Series Date:</strong> 2012-05-07</p>
<strong>Data Taken By:</strong> Matt Swulius</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: None μm,  magnification: 23000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSFTomo</p>
<strong>Collaborators and Roles:</strong> Gift from Piet de Boer</p>
<strong>Purification / Growth Conditions / Treatment:</strong> LB, 30 Degrees Celsius, OD600 ~ 0.6</p>
  mst2012-05-07-17_slicer9639.jpg: Escherichia coli .  filament
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2012-05-07-17/rawdata/</p>20120508_ple7_control2.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2012-05-07-17/rawdata/20120508_ple7_control2.mrc"
        > <i class="download icon"></i> Download </a></p>

        20120508_ple7_control2_full.rec,  Reconstruction (Pixel Size 1.9 nm), 825.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2012-05-07-17/3dimage_18446/20120508_ple7_control2_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/vx5gm-9pn60
title: Cos7_pNL_DN

description: Cos7 cells transfected with pNLGFP provirus construct
description: <strong>Tilt Series Date:</strong> 2012-10-05</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cos7</p>
<strong>Strain:</strong> Cos7 cells</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: None μm,  magnification: 21500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSFTomo</p>
<strong>Collaborators and Roles:</strong> pNLGFP construct provided by Irvin Chen, UCLA</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-10-05-46/rawdata/</p>12oct05_129_1_Cos7_pNL_DN_AT1BT1_0027.mrc,  Tilt Series (Pixel Size 0.49 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-10-05-46/rawdata/12oct05_129_1_Cos7_pNL_DN_AT1BT1_0027.mrc"
        > <i class="download icon"></i> Download </a></p>

        12oct05_129_1_Cos7_pNL_DN_AT1BT1_0027_part122_7.rec,  Reconstruction (Pixel Size 1.96 nm), 530.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-10-05-46/3dimage_24143/12oct05_129_1_Cos7_pNL_DN_AT1BT1_0027_part122_7.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/rjxs3-0tm27
title: 5ug chloramphenicol

description: There may be bacteriophage contamination
description: <strong>Tilt Series Date:</strong> 2013-11-29</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
  psa2013-11-29-16_slicer6151.jpg: flat vesicle .  peptidoglycan .  s-layer psa2013-11-29-16_slicer6152.jpg: nested vesicle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2013-11-29-16/rawdata/</p>atlas20016.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2013-11-29-16/rawdata/atlas20016.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas20016_part121_60.rec,  Reconstruction (Pixel Size 1.92 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2013-11-29-16/3dimage_35246/atlas20016_part121_60.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.3czkhm
title: Occurrence Download

description: A dataset containing 900 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cobitis sinensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 900 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044826-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/1a0yh-k3j76
title: MLV 43D

description: wild type, WT, 1st batch
description: <strong>Tilt Series Date:</strong> 2014-01-16</p>
<strong>Data Taken By:</strong> Luiza Mendonca</p>
<strong>Species / Specimen:</strong> MLV</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 106.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Hung Fan</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-01-16-33/rawdata/</p>C184_1_MLV_43D_wt0008.mrc,  Tilt Series (Pixel Size 4.9 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-01-16-33/rawdata/C184_1_MLV_43D_wt0008.mrc"
        > <i class="download icon"></i> Download </a></p>

        C184_1_MLV_43D_wt0008_full.rec,  Reconstruction (Pixel Size 19.6 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-01-16-33/3dimage_37844/C184_1_MLV_43D_wt0008_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.yr5kv3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Napothera pasquieri",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044827-250811113504898/datasets/export for details.
DOI: 10.22002/k4g6d-65149
title: HIV capsid

description: B grid
description: <strong>Tilt Series Date:</strong> 2013-11-06</p>
<strong>Data Taken By:</strong> Stephen Carter</p>
<strong>Species / Specimen:</strong> HIV cores</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 50.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Wes Sundquist</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2013-11-06-2/rawdata/</p>hiv_capsid_b10007.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2013-11-06-2/rawdata/hiv_capsid_b10007.mrc"
        > <i class="download icon"></i> Download </a></p>

        hiv_capsid_b10007_part121_16.rec,  Reconstruction (Pixel Size 1.92 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2013-11-06-2/3dimage_34033/hiv_capsid_b10007_part121_16.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/vgsks-dtk75
title: 7.5% PEG CF411V

description: 7.5% PEG CF411V
description: <strong>Tilt Series Date:</strong> 2014-09-30</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli in vitro</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: -5.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Lynmarie Thompson</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-09-30-8/rawdata/</p>PEGA411V6defocus0001_mcorr.mrc,  Tilt Series (Pixel Size 0.32 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-09-30-8/rawdata/PEGA411V6defocus0001_mcorr.mrc"
        > <i class="download icon"></i> Download </a></p>

        PEGA411V6defocus0001_mcorr_full.rec,  Reconstruction (Pixel Size 1.28 nm), 430.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-09-30-8/3dimage_46842/PEGA411V6defocus0001_mcorr_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/kkx56-02d88
title: lysed E.coli minicells M259Q

description: lysed E.coli minicells M259Qtotal dose of tilt series too low
description: <strong>Tilt Series Date:</strong> 2013-03-22</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 19500x. </p>
<strong>Acquisition Software:</strong> FEIbatchtomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> John S. Parkinson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> succrose gradients for isolation, Lysis with Lysozyme</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-03-22-39/rawdata/</p>new37.st,  Tilt Series (Pixel Size 0.4171 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-03-22-39/rawdata/new37.st"
        > <i class="download icon"></i> Download </a></p>

        new37_part121_11.rec,  Reconstruction (Pixel Size 0.8342 nm), 2.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-03-22-39/3dimage_26108/new37_part121_11.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/n0ep7-f5e39
title: Agrobacterium tumefaciens

description: Agrobacterium_VirB8-GFP
description: <strong>Tilt Series Date:</strong> 2013-05-09</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> strain from PatZambryski</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-05-09-19/rawdata/</p>virb8_old0002.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-05-09-19/rawdata/virb8_old0002.mrc"
        > <i class="download icon"></i> Download </a></p>

        virb8_old0002_full.rec,  Reconstruction (Pixel Size 1.92 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-05-09-19/3dimage_32610/virb8_old0002_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/endcd-wh831
title: HIV capsid

description: B grid
description: <strong>Tilt Series Date:</strong> 2013-11-06</p>
<strong>Data Taken By:</strong> Stephen Carter</p>
<strong>Species / Specimen:</strong> HIV cores</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 50.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Wes Sundquist</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2013-11-06-12/rawdata/</p>hiv_capsid_b10021.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2013-11-06-12/rawdata/hiv_capsid_b10021.mrc"
        > <i class="download icon"></i> Download </a></p>

        hiv_capsid_b10021_part121_66.rec,  Reconstruction (Pixel Size 1.92 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2013-11-06-12/3dimage_34051/hiv_capsid_b10021_part121_66.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/fjqvh-z2763
title: JT5_cellulosome

description: Cellulosome
description: <strong>Tilt Series Date:</strong> 2013-06-26</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacteroidetes</p>
<strong>Strain:</strong> JT5-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-30.0°, 30.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Matson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> ZAS-1</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-26-9/rawdata/</p>JT5_18K0010.mrc,  Tilt Series (Pixel Size 0.59 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-26-9/rawdata/JT5_18K0010.mrc"
        > <i class="download icon"></i> Download </a></p>

        JT5_18K0010_full.rec,  Reconstruction (Pixel Size 2.36 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-26-9/3dimage_27696/JT5_18K0010_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ecvax-f1x53
title: wt tomogram data

description: Raw data files of wt tomogram data
description: <strong>Tilt Series Date:</strong> 2013-08-22</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> MEF cells</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -14.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Dorit Hanein, Sanford Burnham Medical Research Inst.provided plunge-freeze sample grids</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2013-08-22-25/rawdata/</p>atlas10005.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.7 GB  
        
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        atlas10005_part131_3.rec,  Reconstruction (Pixel Size 2.4 nm), 267.3 MB  
        
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