cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/m2ck4ryhxy
title: Effects of sugarcane cultivation on benthic macroinvertebrate assemblages in tropical streams

description: Tropical streams support a diverse array of benthic macroinvertebrates, which play a crucial role in ecological processes and serve as bioindicators of ecosystem health. However, human-induced disturbances, particularly land use changes, can negatively affect stream structure and function. This study investigated how sugarcane cultivation influences benthic macroinvertebrate communities by comparing streams in sugarcane-dominated landscapes with those surrounded by native vegetation. The first hypothesis proposed that sugarcane plantations would lead to a decline in both taxonomic and functional diversity. The findings partially supported this, indicating that streams in sugarcane areas had lower abundance, taxonomic richness, and diversity, while functional diversity remained unaffected. In contrast, streams with native vegetation exhibited higher macroinvertebrate abundance, reinforcing their ecological importance. The second hypothesis suggested that seasonality would have a stronger influence on taxonomic composition in sugarcane streams due to variations in hydrological patterns. The results confirmed this, showing pronounced seasonal changes in taxonomic composition, especially during the rainy season. These findings underscore the significant effects of sugarcane cultivation on aquatic ecosystems and benthic macroinvertebrate communities. Ongoing monitoring of aquatic organisms in agricultural landscapes is crucial for assessing environmental impacts and guiding conservation efforts.
DOI: 10.17632/p4xpxhw8w2
title: VHB 4905 Processed Mechanical Data

description: Processed Data of Singel step and loading unloading tests of VHB 4905
DOI: 10.17632/ddhm4g6gg5
title: Multi-layered composites from semi-cured recycled rubber sheets and lignin-sepiolite-polyacrylic acid biodegradable water-based coatings

description: The data regarding the experimental section of "Multi-layered composites from semi-cured recycled rubber sheets and lignin-sepiolite-polyacrylic acid biodegradable water-based coatings" by Ramezani et al.
DOI: 10.6084/m9.figshare.23278355.v1
title: Hsp motif

description: motif sequences of 62 Hsp proteins in Sinonvacula constricta
DOI: 10.17632/34hsd2jygc
title: GLOBOCARB OC Burial Rates
DOI: 10.17632/ftfr92br7f
title: Data for: Thermal decomposition behavior of a thermal protection coating composite with silicone rubber: Experiment and modeling

description: TG data of the ablation resistant reinforcement.
DOI: 10.17632/gjdffnfzbr
title: Data for: Network analysis of DUSP12 partners in the nucleus under genotoxic stress

description: MASCOT and MaxQuant data for pull-down samples analyzed through MS/MS. The data is organized according to experimental conditions.
DOI: 10.5522/04/27284667.v1
title: Dynamic Flash Video Data (Raw) with Time-varying Appearance

description: A dataset of 21 flash-lit videos of time-varying materials is acquired, by a simple-to-construct setup. The raw data in their original resolutions and formats (DNG photographs and Blender scenes). The data includes many natural phenomena: rusting, melting, drying, crystallizing, etc.The details of physical capture setup can be found in our paper, and some instructions to reproduce this dataset can be found in this repo.This dataset is released in the paper:<br><i>Chen Liu and Tobias Ritschel. 2024. Neural Differential Appearance Equations. ACM Transactions on Graphics (Proceedings of SIGGRAPH Asia) (2024).</i>
DOI: 10.6084/m9.figshare.14778582.v1
title: Appendix 2 Student Interview Protocol

description: Student interview protocol for qualitative phase of study.
DOI: 10.17632/ysgvp8ybgz
title: Genetic algorithm optimized artificial neural network - co-optimization

description: Co-optimization of two response biomass (X), and PHA (P) based on RSM design - modeling and optimization. The second/ independent path takes the ANN approach. The same experimental design was exploited to have ANN-based modeling - ANN structure optimized with GA. The ANN model has been further utilized to co-optimize the responses.
DOI: 10.6084/m9.figshare.14134295.v1
title: Supplementary Material for: Unique Metastatic Patterns in Neuroendocrine Neoplasms of Different Primary Origin

description: <b><i>Introduction:</i></b> Neuroendocrine neoplasms (NEN) can originate in different organs, for example, the gastroenteral tract (GE), pancreas (Pan), or lungs (L). Our aim was to examine metastatic patterns for patients with NEN of various primary origins with a special focus on brain metastases to indicate utility for screening. <b><i>Methods:</i></b> All NEN patients except for small cell lung cancer registered in the Netherlands Cancer Registry from 2008 to 2018 were selected. Metastatic patterns at initial diagnosis for NEN with different primary origins were compared. In a subcohort of patients from 2 referral hospitals (2014–2019), additional information on, for example, development of metastases after initial presentation was available. <b><i>Results:</i></b> In the nationwide cohort, 4,768/11,120 (43%) patients had metastatic disease at diagnosis (GE: 1,504/4,710 [32%]; Pan: 489/1,150 [43%]; and L: 1,230/2,978 [41%]). For GE- and Pan-NEN, the most prevalent metastatic site was the liver (25 and 39%), followed by distant lymph nodes (8 and 8%), whereas only few patients with brain metastases were identified (0% in both). In contrast, for L-NEN, prevalence of metastases in the liver (19%), brain (9%), lung (7%), and bone (14%) was more equal. In the reference network cohort, slightly more NEN patients had metastatic disease (260/539, 48%) and similar metastatic patterns were observed. <b><i>Conclusion:</i></b> Almost half of NEN patients were diagnosed with synchronous metastatic disease. L-NEN have a unique metastatic pattern compared to GE- and Pan-NEN. Remarkably, an important part of L-NEN metastases was in the brain, whereas brain metastases were almost absent in GE- and Pan-NEN, indicating utility of screening in L-NEN.
DOI: 10.6084/m9.figshare.5053948.v2
title: Code for "Reduced North American terrestrial primary productivity linked to anomalous Arctic warming"

description: IDL codes for calculating Arctic warming-related teleconnections and terrestrial anomalies.
DOI: 10.17632/gyryhnp52h
title: IoTMonitor-WQ: A Remote water-quality monitoring IoT platform

description: Water quality is determined by evaluating a set of physical, chemical, and biological characteristics in surface water sources or tributaries. The monitoring of variables such as pH,
electrical conductivity, and dissolved oxygen allows establishing the quality of water for human consumption. However, it is currently only possible to obtain this information at points distant from water sources or tributaries by collecting samples in the field (in situ). Field testing costs are high and require important investment in logistics and time. For this reason, we built a low-cost
microcontroller-based IoT platform for monitoring water quality parameters named IoT-Monitor-to-Water-Quality (IoTMonitor-WQ). This platform is built with precision sensors, LoRa technology, and an energy autonomy module. We demonstrate with IoTMonitor-WQ an effective technological solution in sampling, data storage and transmission, and subsequent
evaluation of relevant data influencing water quality in remote locations.
DOI: 10.17632/p34mzy8jfx
title: A study of CD8+ T cells specific for an immunodominant SARS-CoV-2 nucleocapsid epitope cross-react with selective seasonal coronaviruses. Lineburg et al.

description: Supplemental Data
DOI: 10.17632/rcz924v6x6
title: Metaverse

description: The Study of Application of Metaverse in The Retail Industry And Its Impact on Consumer Buying Behavior 
To glean insights, we surveyed 400 frequent online shoppers, assessing their perceptions, expectations, and experiences related to Metaverse shopping. Alongside this, we also conducted an extensive literature review, analysing various academic articles, industry reports, and expert commentaries about the convergence of the Metaverse and retail.
The Metaverse is not merely an evolving digital playground but is reshaping critical sectors like retail. This research aims to offer businesses a nuanced understanding of the opportunities and challenges that lie ahead, enabling them to make informed strategic decisions.
DOI: 10.6084/m9.figshare.25223942.v1
title: <b>Extrafloral nectaries of the </b><b><i>Aristolochia zollingeriana </i></b><b>(</b><b><i>Aristolochiaceae</i></b><b>)</b>

description: <b>Funamoto D. Extrafloral nectaries of the Aristolochia zollingeriana (Aristolochiaceae) </b>
DOI: 10.17632/4r353rt6bh
title: When your friend takes a fall: spillovers of patent infringement lawsuits on firm innovation via cross-owners—ECMODE

description: Patent infringement lawsuits profoundly affect firms’ innovation decisions, but few studies explore the influence from external uninvolved firms. Using the PSM-DID method and Chinese A-share listed firms’ data from 2009 to 2020, we examine whether patent infringement lawsuits affect innovation of firms not involved but sharing cross-owners with the involved. We find that after sued cross-held firms encounter patent infringement lawsuits, uninvolved focal firms increase innovation investment significantly. Information transmission from cross-owners is the important mechanism. Additionally, when sued cross-held firms and uninvolved focal firms belong to the same dialect region, industry, or uninvolved focal firms are non-SOEs, the innovation spillovers of patent infringement lawsuits are more obvious. Finally, we show that after uninvolved focal firms promote innovation input, their current and future innovation output goes up as well. Our study reveals the innovation spillovers of patent infringement lawsuits and expands research on inter-firm interaction through cross-owners.
DOI: 10.6084/m9.figshare.20231493.v1
title: metabolites-185209

description: LC-MS data of all the experiments published in the article: Bordanaba-Florit, G.; van Liempd, S.; Cabrera, D.; Royo, F.; Falcón-Pérez, J.M. Simultaneous Quantification of Steroid Hormones Using hrLC-MS in Endocrine <br> Tissues of Male Rats and <br> Human Samples. <em>Metabolites </em><strong>2022</strong> <br> Here we included the MS data (integrated peaks) of the first rounds of optimization, also the recovery experiments and all the tissue and bioliquids analysed. <br> Do not heasitate to contact us in case you need any information: gbordanaba@cicbiogune.es
DOI: 10.6084/m9.figshare.28080371.v1
title: Comparison of sagittal measurements of cervical spine in spondylosis patients between Magnetic Resonance Imaging and Radiograph.<i> </i><i>Strobe checklist.</i>

description: Comparison of sagittal measurements of cervical spine in spondylosis patients between Magnetic Resonance Imaging and Radiograph.<i> </i><i>Strobe checklist.</i>
DOI: 10.6084/m9.figshare.7471946.v1
title: Datasets for the real data analysis

description: Two datasets analyzed in the real data analysis.
DOI: 10.17632/bp4zw6rzm8
title: An efficient and convenient method for the preservation of germplasm resources: Cryopreservation of mature testis of large yellow croaker (Larimichthys crocea)

description: The raw data of trypan blue staining, H&E staining, qRT-PCR, and in situ hybridization
DOI: 10.6084/m9.figshare.14618235.v4
title: ForestTemp: sub-canopy microclimate temperatures of European forests

description: Combining more than 1,200 time series of <em>in situ</em> near-surface forest temperatures with topographical, biological and macroclimatic variables in a machine learning model, we predicted the monthly offset for minimum, mean and maximum temperature between sub-canopy temperature at 15 cm above the surface and free-air temperature over the period 2000-2020 at a spatial resolution of 25 x 25 m² across Europe.
When using any of these layers, please cite: 

 Haesen et al. (2021). ForestTemp –Sub-canopy microclimate temperatures of European forests. Global Change Biology, <em>27</em>(23), 6307–6319. https://doi.org/10.1111/gcb.15892

To mask pixels by the proportion of extrapolation, the file 'extrapolation.tif' can be used. All layers are projected in epsg:3035.
<br>
Version history:

 v1: original layers (DO NOT USE)
 v2: corrigendum layers
 v3: added layers for maximum temperature offsets
 v4: added layers for minimum temperature offsets
DOI: 10.6084/m9.figshare.22302553.v1
title: Data and analysis code for "Rapid Assessment of Landslide and Rockslide Scale using an Enhanced Probabilistic Neural Network”

description: The file includes all codes and landslide seismic signal datasets for the establishment of ENPP method and case analysis in paper "Rapid Assessment of Landslide and Rockslide Scale using an Enhanced Probabilistic Neural Network"
DOI: 10.6084/m9.figshare.25341487.v1
title: Supplementary Material for: Nesprin1 deficiency is associated with poor prognosis of renal cell carcinoma and resistance to sunitinib treatment

description: Introduction: Nuclear envelope spectrin repeat protein (Nesprin) 1 encoded by SYNE1, crucially regulates the morphology and functions of the cell. Mutations in the SYNE1 gene are associated with various diseases; however, their significance in renal cell carcinoma (RCC) remains unknown. In this study, we have investigated the association of SYNE1/Nesprin1 with the progression and prognosis of clear cell RCC (ccRCC). Methods: In silico analyses of publicly available datasets of patients with RCC were performed. Based on the cohort data, Nesprin1 expression in nephrectomized tissue samples acquired from patients with ccRCC was analyzed using immunohistochemical staining. The invasion, migration, and proliferation of the SYNE1-knockdown human RCC cell lines were analyzed in vitro; moreover, RNA sequencing and Gene Set Enrichment Analysis were conducted to study the molecular mechanism underlying the association of SYNE1/Nesprin1 with prognosis of RCC. Results: Patients with RCC-associated SYNE1 gene mutations exhibited significantly worse overall and progression-free survivals. Patients with Nesprin1-negative ccRCC tumors exhibit significantly poorer overall, cancer-specific, and recurrence-free survival rates than those recorded in the Nesprin1-positive group. SYNE1 knockdown enhanced the invasion and migration of RCC cells, however, it did not influence the proliferation of cells. RNA sequencing and Gene Set Enrichment Analysis revealed that SYNE1 knockdown significantly altered the expression of genes associated with oxidative phosphorylation. Consistently, patients with RCC exhibiting low SYNE1 expression, who were treated with the vascular endothelial growth factor receptor inhibitor sunitinib, had worse progression-free survival. Conclusions: The results indicate that the expression of SYNE1/Nesprin1 and SYNE1 mutations in patients with RCC are closely linked to their prognosis and responsiveness to sunitinib treatment.
DOI: 10.6084/m9.figshare.3817356.v5
title: Supplementary files for LFLS metagenome paper

description: Supplementary file 1. Spreadsheet with YSI data. Supplementary file 2. Krona HTML file with the taxonomy. Supplementary file 3. Spreadsheet with the relative abundances of all the RXNs. Supplementary file 4. Table with the raw HUMAnN2 output.
DOI: 10.17632/w573hwyxmn
title: Phasego 2.0: Counting full anharmonic effects from high-temperature phonon density of states

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract In this paper, we present a revised version of Phasego 1.0 toolkit. The automatic anharmonic effects analysis functionality is added to perform the full anharmonic corrections for the quasi-harmonic approximation (QHA) results. The anharmonic free energies are extracted from the high-temperature phonon density of states (DOS), and then the phase boundaries and other properties can be automatically corrected by taking into account full anharmonic effects. Title of program: Phasego2 Catalogue Id: AEVQ_v2_0 Nature of problem The anharmonic lattice vibrations have more and more contributions to Gibbs free energy when temperature is beyond Debye temperature and goes up to melting temperature. The quasi-harmonic approximation (QHA) only includes part of the anharmonic effects due to the volume variation of frequency. At high temperature, the neglect of phonon-phonon interactions in the QHA will introduce errors and even arrive at wrong conclusions. However, the calculation of the anharmonic free energy from the phonon- ... Versions of this program held in the CPC repository in Mendeley Data AEVQ_v1_0; Phasego; 10.1016/j.cpc.2015.01.023 AEVQ_v2_0; Phasego2; 10.1016/j.cpc.2015.07.018 AEVQ_v1_0; Phasego; 10.1016/j.cpc.2015.01.023 AEVQ_v2_0; Phasego2; 10.1016/j.cpc.2015.07.018
DOI: 10.6084/m9.figshare.10259948.v1
title: Supplementary Material for: Brain-Derived Neurotrophic Factor and Supraoptic Vasopressin Neurons in Hyponatremia

description: Hyponatremia due to elevated arginine vasopressin (AVP) secretion increases mortality in liver failure patients. The mechanisms causing dysregulation of AVP secretion are unknown. Our hypothesis is that inappropriate AVP release associated with liver failure is due to increased brain-derived neurotrophic factor (BDNF) in the supraoptic nucleus (SON). BDNF diminishes GABA<sub>A</sub> inhibition in SON AVP neurons by increasing intracellular chloride through tyrosine receptor kinase B (TrkB) activation and downregulation of K+/Cl– cotransporter 2 (KCC2). This loss of inhibition could increase AVP secretion. This hypothesis was tested using shRNA against BDNF (shBDNF) in the SON in bile duct ligated (BDL) male rats. All BDL rats had significantly increased liver weight (<i>p</i> &lt; 0.05; 6–9) compared to shams. BDL rats with control ­shRNA injections (BDL scrambled [SCR]) developed hyponatremia with increased plasma AVP and copeptin (CPP; all <i>p</i> &lt; 0.05; 6–9) compared to sham groups. This is the first study to show that phosphorylation of TrkB is significantly increased along with significant decrease in phosphorylation of KCC2 in BDL SCR rats compared to the sham rats (<i>p</i> &lt; 0.05;6–8). Knockdown of BDNF in the SON of BDL rats (BDL shBDNF) significantly increased plasma osmolality and hematocrit compared to BDL SCR rats (<i>p</i> &lt; 0.05; 6–9). The BDL shBDNF rats had significant (<i>p</i> &lt; 0.05; 6–9) decreases in plasma AVP and CPP concentration compared to BDL SCR rats. The BDNF knockdown also significantly blocked the increase in TrkB phosphorylation and decrease in KCC2 phosphorylation (<i>p</i> &lt; 0.05; 6–8). The results indicate that BDNF produced in the SON contributes to increased AVP secretion and hyponatremia during liver failure.
DOI: 10.17632/69yx4mgntw
title: Fatty acid profile data of one fatty fish using GC-FID and GC-MS analysis: comparative study

description: Seafood is highly prized for its nutritional and therapeutic properties. Of these, fish is the most prized for its meat and its many properties. The essential fatty acids and other long chain fatty acids provided by certain fish species are responsible for their antimicrobial, anticoagulant and antioxidant properties. The aim of the present work was therefore to provide a fatty acid profile of a smoked fish oil using two chromatographic methods. The smoked fish oil was methylated using the MeOH/KOH method before injection into a Stabil Wax®-DA GC-FID column and an SP 2560 GC-MS capillary column. Supelco's mixture of 37 fatty acid methyl esters (FAMEs) was used to identify and quantify the FAMEs by GC-FID, while the NIST17s 4b FAMEs library was used to identify the profile of different fatty acids by GC-MS. GC-FID identified 30 FAMEs, with palmitic acid (C16:0) being the most abundant, followed by palmitoleic acid (C16:1) and myristic acid (C14:0). Biologically active fatty acids such as docosahexaenoic acid (DHA, C22:6n3) and eicosapentaenoic acid (EPA, C20:5n3) were also identified at levels of 3.73% and 13.36%. Of the FAMEs identified, 48.71% were saturated and 51.79% were unsaturated. Polyunsaturated fatty acids were less abundant than monounsaturated fatty acids, with Ꞷ-3 dominating this class. GC-MS detection of FAMEs and other compounds identified 72 FAMEs, 11 methyl ester FAMEs and 5 other compounds. Among the FAMEs identified in this library were non-conventional fatty acids such as C17:3n3, C16:1n10, C17:1n7, C18:2n9 and C23:6n3. Of the identified FAMEs, 17 are saturated and 55 are unsaturated. Among the methyl esters, the substituted fatty acids tridecanoic acid, 12-methyl, methyl ester and tridecanoic acid, 4,8,12-trimethyl, methyl ester were identified. Comparison of the GC-MS and GC-FID profiles shows a similarity in the proportions of saturated and unsaturated fatty acids.
DOI: 10.17632/gxtd8b8g8w
title: User Interface

description: This data contains the responses of paid subscribers of Online Video Streaming Platforms such as Netflix, Amaozn Prime, Disney+
DOI: 10.17632/rpgcbzzhdt
title: VegasFlow: Accelerating Monte Carlo simulation across multiple hardware platforms

description: We present VegasFlow, a new software for fast evaluation of high dimensional integrals based on Monte Carlo integration techniques designed for platforms with hardware accelerators. The growing complexity of calculations and simulations in many areas of science have been accompanied by advances in the computational tools which have helped their developments. VegasFlow enables developers to delegate all complicated aspects of hardware or platform implementation to the library so they can focus on the problem at hand. This software is inspired on the Vegas algorithm, ubiquitous in the particle physics community as the driver of cross section integration, and based on Google’s powerful TensorFlow library. We benchmark the performance of this library on many different consumer and professional grade GPUs and CPUs.
DOI: 10.17632/799hjfj59c
title: AIFaceswap - Free AI Face Swap Online

description: AIFaceswap is designed to deliver a wide range of creative opportunities for users, catering to both casual fun and professional applications. With continued technological advancements, it’s set to become even more efficient and accessible.
What makes AIFaceswap stand out among its competitors:
● Free-to-use platform that rivals the performance of premium tools without any cost.
● No special requirements—simply upload your image and swap faces in seconds.
● Fast, reliable face-swapping with high-quality results delivered in moments.
● Prioritizes user privacy with no login needed; all records can be deleted manually or will automatically disappear within two days.
● Supports both individual and multiple face replacements, automatically recognizing faces in any image.
● Gender-swapping features allow users to experiment with different appearances across genders.
● Video and GIF face-swapping is supported, making it a fast and easy process.

Welcome to AIFaceswap, where you can swap faces in pictures or videos like an expert without any picture editing skills or experience.
DOI: 10.17632/h7fdb6225t
title: Supplementary Materials of "https://doi.org/10.3168/jds.2023-23294"

description: A supplemetary Materials of Fermented camel milk influenced by soy extract: Apparent viscosity, viscoelastic properties, thixotropic behavior, and biological activities
DOI: 10.17632/pncz3bzjy8
title: Code: Multi-objective closed-loop supply chain inventory model with learning and forgetting under carbon emission policies using NSGA-II, MOPSO, and TOPSIS

description: This repository contains MATLAB and Python code developed for the study titled:
"Multi-objective closed-loop supply chain inventory model with learning and forgetting under carbon emission policies using NSGA-II, MOPSO, and TOPSIS" submitted to Applied Soft Computing. The README.txt file provides a description of the included files and instructions on how to use the code.