DOI: 10.5061/dryad.k0gq6
title: Data from: Host conservatism, geography, and elevation in the evolution of a Neotropical moth radiation

description: The origins of evolutionary radiations are often traced to the
 colonization of novel adaptive zones, including unoccupied habitats or
 unutilized resources. For herbivorous insects, the predominant mechanism
 of diversification is typically assumed to be a shift onto a novel lineage
 of host plants. However, other drivers of diversification are important in
 shaping evolutionary history, especially for groups residing in regions
 with complex geological histories. We evaluated the contributions of
 shifts in host plant clade, bioregion, and elevation to diversification in
 Eois (Lepidoptera: Geometridae), a hyper-diverse genus of moths found
 throughout the Neotropics. Relationships among 107 taxa were reconstructed
 using one mitochondrial and two nuclear genes. In addition, we used a
 genotyping-by-sequencing approach to generate 4,641 SNPs for 137 taxa.
 Both data sets yielded similar phylogenetic histories, with relationships
 structured by host plant clade, bioregion, and elevation. While
 diversification of basal lineages often coincided with host clade shifts,
 more recent speciation events were more typically associated with shifts
 across bioregions or elevational gradients. Overall, patterns of
 diversification in Eois are consistent with the perspective that shifts
 across multiple adaptive zones synergistically drive diversification in
 hyper-diverse lineages.
description: COI Sanger
 alignmentThis file contains the
 aligned sequences for the cytochrome oxidase 1 gene.eois_coi.nexEF1-alpha Sanger alignmentThis file contains the aligned sequences for the elongation factor 1-alpha gene.eois_ef1alpha.nexWG Sanger alignmentThis file contains the aligned sequences for the wingless gene.eois_wg.nexGBS library preparation protocolThis file outlines the library preparation protocol for genotyping-by-sequencing.gbs_protocol.pdfPhylip to Fasta conversion scriptThis script converted the Phylip file that was generated by ipyrad into a Fasta file.phylip_to_fasta.plE_apyraria_389.fastqIndividual fastq file from the genotyping by sequencing dataset.E_arenacea_46.fastqIndividual fastq file from the genotyping by sequencing dataset.E_auruda_45.fastqIndividual fastq file from the genotyping by sequencing dataset.E_basaliata_109.fastqIndividual fastq file from the genotyping by sequencing dataset.E_cancellata_27.fastqIndividual fastq file from the genotyping by sequencing dataset.E_cervina_44.fastqIndividual fastq 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