cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zaxjwn
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Machine Observation",
 "Continent is South America",
 "Country is Ecuador",
 "OccurrenceStatus is Present",
 "PublishingOrg is c54097e6-0972-4acb-b849-eaeba29c917d",
 "TaxonKey is Aves",
 "Year 2020-2024"
 ]
}

 The dataset includes 123 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001280-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q7ec2v
title: Occurrence Download

description: A dataset containing 3280 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Balanidae, Serpulidae, Watersiporidae, Styelidae, Pennariidae, Mytilidae, Teredinidae, Ulvaceae, Caulerpaceae, Bougainvilliidae, Syllidae, Hydractiniidae, Varunidae, Bolinopsidae)",
 "Geometry POLYGON ((33.925781 30.297018, 30.849609 30.221102, 36.738281 17.978733, 42.539063 11.867351, 46.054688 9.362353000000001, 53.613281 12.297068, 64.6875 21.616579, 66.269531 25.403585, 65.302734 29.993002, 50.976563 32.398516, 33.925781 30.297018))"
 ]
}

 The dataset includes 3280 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001281-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18426031
title: BUXORO –XIVA NEFTGAZLILIK REGIONIDA RAPALI QATLAMLARNI BURG'ILAB OCHISHDAGI MUAMMOLAR.
DOI: 10.5281/zenodo.18426032
title: BUXORO –XIVA NEFTGAZLILIK REGIONIDA RAPALI QATLAMLARNI BURG'ILAB OCHISHDAGI MUAMMOLAR.
DOI: 10.6084/m9.figshare.31199121
title: Additional file 1 of New insights into Chitosan nano-carriers for RNA delivery and carbon dot imaging for cancer theranostics: challenges and future prospects

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.31199121.v1
title: Additional file 1 of New insights into Chitosan nano-carriers for RNA delivery and carbon dot imaging for cancer theranostics: challenges and future prospects

description: Supplementary Material 1
DOI: 10.15468/dl.w3dt4q
title: Occurrence Download

description: A dataset containing 255 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crucihimalaya himalaica",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 255 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001282-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31199142
title: Additional file 1 of Multiple linear regression modeling with values below a lower limit of quantification – a statistical method comparison

description: Additional file 1. Additional information on the standard deviation of $$\epsilon$$ of the random error of the models and additional figures of the results can be found in the supplement.
DOI: 10.6084/m9.figshare.31199142.v1
title: Additional file 1 of Multiple linear regression modeling with values below a lower limit of quantification – a statistical method comparison

description: Additional file 1. Additional information on the standard deviation of $$\epsilon$$ of the random error of the models and additional figures of the results can be found in the supplement.
DOI: 10.6084/m9.figshare.31199145
title: Additional file 1 of Therapeutic plasma exchange in severe postpartum HELLP syndrome: a promising treatment

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.31199145.v1
title: Additional file 1 of Therapeutic plasma exchange in severe postpartum HELLP syndrome: a promising treatment

description: Supplementary Material 1.
DOI: 10.15468/dl.vcjvxb
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clavus pusilla",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 45 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001284-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31199193
title: Additional file 2 of Coordinated single-nucleus responses for quantitative disease resistance involve a calcium-associated switch in transcriptional noise

description: Additional file 2: Table S1. General properties for level 1 single-nucleus RNA-seq clusters. Table S2. Evidence used for the annotation of single-nucleus RNA-seq clusters. Table S3. Annotation of consensus non-negative matrix factorization cell clusters. Table S4. Association of genes with CNMF groups. Table S5. Identification of cluster specific genes. Table S6. Annotation of single-nulceus RNA-seq clusters based on cell similarity annotations with other datasets. Table S7. Marker genes used for the annotation of single-nucleus RNA-seq clusters. Table S8. Gene ontology terms enriched in single nucleus RNA-seq clusters and average expression log fold change between control and inoculated cells. Table S9. Genes with differential expression between the control and treated samples. Table S10. Normalized read counts by gene by Trimmed Mean of M-values for tagseq data. Table S11. Differential expression analysis for inoculated versus control samples for the tagseq data. Table S12. List of cell-type specific and common DEGs with GO enrichment analysis. Table S13. Normalized expression along pseudotime trajectory 1 for differentially expressed genes along this trajectory. Table S14. Normalized expression along pseudotime trajectory 2 for differentially expressed genes along this trajectory. Table S15. Normalized expression along pseudotime trajectory 3 for differentially expressed genes along this trajectory. Table S16. Position along pseudotime trajectories and transcriptional noise metrics for each nucleus. Table S17. Number of expressing cells and transcriptional noise metrics for each gene. Table S18. Gene ontologies enriched among genes showing an increase in entropy upon inoculation. Table S19. List of Arabidopsis thaliana genes associated with defense responses. Table S20. Correlation tests between gene expression patterns and transcriptional noise metrics along pseudotime trajectory 2. Table S21. Gene ontologies enriched among genes with expression significantlycorrelated with entropy.
DOI: 10.6084/m9.figshare.31199193.v1
title: Additional file 2 of Coordinated single-nucleus responses for quantitative disease resistance involve a calcium-associated switch in transcriptional noise

description: Additional file 2: Table S1. General properties for level 1 single-nucleus RNA-seq clusters. Table S2. Evidence used for the annotation of single-nucleus RNA-seq clusters. Table S3. Annotation of consensus non-negative matrix factorization cell clusters. Table S4. Association of genes with CNMF groups. Table S5. Identification of cluster specific genes. Table S6. Annotation of single-nulceus RNA-seq clusters based on cell similarity annotations with other datasets. Table S7. Marker genes used for the annotation of single-nucleus RNA-seq clusters. Table S8. Gene ontology terms enriched in single nucleus RNA-seq clusters and average expression log fold change between control and inoculated cells. Table S9. Genes with differential expression between the control and treated samples. Table S10. Normalized read counts by gene by Trimmed Mean of M-values for tagseq data. Table S11. Differential expression analysis for inoculated versus control samples for the tagseq data. Table S12. List of cell-type specific and common DEGs with GO enrichment analysis. Table S13. Normalized expression along pseudotime trajectory 1 for differentially expressed genes along this trajectory. Table S14. Normalized expression along pseudotime trajectory 2 for differentially expressed genes along this trajectory. Table S15. Normalized expression along pseudotime trajectory 3 for differentially expressed genes along this trajectory. Table S16. Position along pseudotime trajectories and transcriptional noise metrics for each nucleus. Table S17. Number of expressing cells and transcriptional noise metrics for each gene. Table S18. Gene ontologies enriched among genes showing an increase in entropy upon inoculation. Table S19. List of Arabidopsis thaliana genes associated with defense responses. Table S20. Correlation tests between gene expression patterns and transcriptional noise metrics along pseudotime trajectory 2. Table S21. Gene ontologies enriched among genes with expression significantlycorrelated with entropy.
DOI: 10.6084/m9.figshare.31199198
title: Additional file 1 of Estrogen receptor (ESR) 1 promotes uterine leiomyoma cell proliferation by enhancing mitochondrial energy metabolism via Wnt/β-catenin pathway activation

description: Supplementary Material 1. Supplementary Tabel 1: ESR1 siRNA interference sequences and NC sequences.
DOI: 10.6084/m9.figshare.31199198.v1
title: Additional file 1 of Estrogen receptor (ESR) 1 promotes uterine leiomyoma cell proliferation by enhancing mitochondrial energy metabolism via Wnt/β-catenin pathway activation

description: Supplementary Material 1. Supplementary Tabel 1: ESR1 siRNA interference sequences and NC sequences.
DOI: 10.6084/m9.figshare.31199201
title: Additional file 2 of Estrogen receptor (ESR) 1 promotes uterine leiomyoma cell proliferation by enhancing mitochondrial energy metabolism via Wnt/β-catenin pathway activation

description: Supplementary Material 2. Supplementary Tabel 2: Primer sequences for RT-qPCR.
DOI: 10.6084/m9.figshare.31199201.v1
title: Additional file 2 of Estrogen receptor (ESR) 1 promotes uterine leiomyoma cell proliferation by enhancing mitochondrial energy metabolism via Wnt/β-catenin pathway activation

description: Supplementary Material 2. Supplementary Tabel 2: Primer sequences for RT-qPCR.
DOI: 10.6084/m9.figshare.31199204
title: Additional file 3 of Estrogen receptor (ESR) 1 promotes uterine leiomyoma cell proliferation by enhancing mitochondrial energy metabolism via Wnt/β-catenin pathway activation

description: Supplementary Material 3. Supplementary Tabel 3: Antibody information and dilution ratios for western blot experiments.
DOI: 10.6084/m9.figshare.31199204.v1
title: Additional file 3 of Estrogen receptor (ESR) 1 promotes uterine leiomyoma cell proliferation by enhancing mitochondrial energy metabolism via Wnt/β-catenin pathway activation

description: Supplementary Material 3. Supplementary Tabel 3: Antibody information and dilution ratios for western blot experiments.
DOI: 10.6084/m9.figshare.31199207.v1
title: Additional file 4 of Estrogen receptor (ESR) 1 promotes uterine leiomyoma cell proliferation by enhancing mitochondrial energy metabolism via Wnt/β-catenin pathway activation

description: Supplementary Material 4. Supplementary Tabel 4: Summary Table of differentially expressed genes in GSE593 dataset.
DOI: 10.6084/m9.figshare.31199207
title: Additional file 4 of Estrogen receptor (ESR) 1 promotes uterine leiomyoma cell proliferation by enhancing mitochondrial energy metabolism via Wnt/β-catenin pathway activation

description: Supplementary Material 4. Supplementary Tabel 4: Summary Table of differentially expressed genes in GSE593 dataset.
DOI: 10.6084/m9.figshare.31199210
title: Additional file 5 of Estrogen receptor (ESR) 1 promotes uterine leiomyoma cell proliferation by enhancing mitochondrial energy metabolism via Wnt/β-catenin pathway activation

description: Supplementary Material 5. Western blot raw images.
DOI: 10.6084/m9.figshare.31199210.v1
title: Additional file 5 of Estrogen receptor (ESR) 1 promotes uterine leiomyoma cell proliferation by enhancing mitochondrial energy metabolism via Wnt/β-catenin pathway activation

description: Supplementary Material 5. Western blot raw images.
DOI: 10.6084/m9.figshare.31199228
title: Additional file 1 of Network meta-analysis with dose-response relationships

description: Additional file 1. Annotated R code for DR-NMA analyses. Contains the full R script used to implement standard NMA and DR-NMA models (including linear, exponential, quadratic, FP1, and RCS) with the netdose package. The script includes applications to hypothetical data, the general anesthesia dataset, and the antidepressant dataset.
DOI: 10.6084/m9.figshare.31199228.v1
title: Additional file 1 of Network meta-analysis with dose-response relationships

description: Additional file 1. Annotated R code for DR-NMA analyses. Contains the full R script used to implement standard NMA and DR-NMA models (including linear, exponential, quadratic, FP1, and RCS) with the netdose package. The script includes applications to hypothetical data, the general anesthesia dataset, and the antidepressant dataset.
DOI: 10.6084/m9.figshare.31199229
title: Additional file 3 of FoTeRs: a novel family of telomere-associated retrotransposons in Fusarium oxysporum

description: Supplementary Material 3. Table S3. Tandem repeats identified within FoTeR elements across F. oxysporum strains. Both shared and strain-specific variable number tandem repeats (VNTRs) are included for each strain, detailing the repeat identifier, the full tandem repeat sequence, its genomic location, and the number of copies. The table also includes internal subheadings to distinguish between shared and strain-specific VNTRs for each strain.
DOI: 10.6084/m9.figshare.31199229.v1
title: Additional file 3 of FoTeRs: a novel family of telomere-associated retrotransposons in Fusarium oxysporum

description: Supplementary Material 3. Table S3. Tandem repeats identified within FoTeR elements across F. oxysporum strains. Both shared and strain-specific variable number tandem repeats (VNTRs) are included for each strain, detailing the repeat identifier, the full tandem repeat sequence, its genomic location, and the number of copies. The table also includes internal subheadings to distinguish between shared and strain-specific VNTRs for each strain.
DOI: 10.6084/m9.figshare.31199232
title: Additional file 4 of FoTeRs: a novel family of telomere-associated retrotransposons in Fusarium oxysporum

description: Supplementary Material 4. Table S4. Detailed FoTeR integration site information and flanking sequence architecture. This table illustrates the structural organization of FoTeR and truncated FoTeR (tFoTeR) insertions at chromosomal ends of each strain, detailing strand-specific junction features, including flanking repeat sequences, adjacent telomeric repeats, and copy number estimates for both 5′ and 3′ ends of FoTeR insertions. Repeat sequences are annotated with motif identity and approximate tandem copy number; for example, 'TAACCC/3.5' indicates the motif 'TAACCC' is repeated 3.5 times. The status of each FoTeR element (full-length or truncated) is displayed in the column 'FoTeR/tFoTeR.' Full-length FoTeR elements are designated as 'FoTeR.' Truncated FoTeRs (tFoTeRs) are denoted by their genomic coordinates within parentheses, where the coordinates indicate the start and end positions of the identified truncated element. For example, (1-145) signifies a tFoTeR truncated from its 3' end at location 145 bp, while (4494-6201) indicates a tFoTeR truncated from its 5' end at location 4494 bp. Asterisks (*) in columns detailing telomeric repeats of tFoTeRs indicate that tFoTeR/s in that chromosome end in that strain were truncated at the respective end, so there is no telomeric association with that end.
DOI: 10.6084/m9.figshare.31199232.v1
title: Additional file 4 of FoTeRs: a novel family of telomere-associated retrotransposons in Fusarium oxysporum

description: Supplementary Material 4. Table S4. Detailed FoTeR integration site information and flanking sequence architecture. This table illustrates the structural organization of FoTeR and truncated FoTeR (tFoTeR) insertions at chromosomal ends of each strain, detailing strand-specific junction features, including flanking repeat sequences, adjacent telomeric repeats, and copy number estimates for both 5′ and 3′ ends of FoTeR insertions. Repeat sequences are annotated with motif identity and approximate tandem copy number; for example, 'TAACCC/3.5' indicates the motif 'TAACCC' is repeated 3.5 times. The status of each FoTeR element (full-length or truncated) is displayed in the column 'FoTeR/tFoTeR.' Full-length FoTeR elements are designated as 'FoTeR.' Truncated FoTeRs (tFoTeRs) are denoted by their genomic coordinates within parentheses, where the coordinates indicate the start and end positions of the identified truncated element. For example, (1-145) signifies a tFoTeR truncated from its 3' end at location 145 bp, while (4494-6201) indicates a tFoTeR truncated from its 5' end at location 4494 bp. Asterisks (*) in columns detailing telomeric repeats of tFoTeRs indicate that tFoTeR/s in that chromosome end in that strain were truncated at the respective end, so there is no telomeric association with that end.
DOI: 10.6084/m9.figshare.31199235
title: Additional file 5 of FoTeRs: a novel family of telomere-associated retrotransposons in Fusarium oxysporum

description: Supplementary Material 5. Table S5. A comprehensive overview of the characteristics of each chromosome's end, including details on the numbers of identified FoTeRs and TLHs.
DOI: 10.6084/m9.figshare.31199235.v1
title: Additional file 5 of FoTeRs: a novel family of telomere-associated retrotransposons in Fusarium oxysporum

description: Supplementary Material 5. Table S5. A comprehensive overview of the characteristics of each chromosome's end, including details on the numbers of identified FoTeRs and TLHs.
DOI: 10.6084/m9.figshare.31199238
title: Additional file 6 of FoTeRs: a novel family of telomere-associated retrotransposons in Fusarium oxysporum

description: Supplementary Material 6. Table S6. Mutational analysis of FoTeR ORFs across F. oxysporum strains. A) Extended details of Table 5 show strain-specific mutation profiles across FoTeR ORFs. B–H) Strain-specific alignments of FoTeR ORFs from the following strains: B) II5, C) BRIP62122, D) GL1080, E) GL1315, F) GL1381, G) MAFF727510, and H) Fo47. The FoTeR ORF sequences from each strain were aligned using ClustalOmega to detect mutations compared to its consensus sequence. Only nucleotide positions with at least one mismatch are shown; conserved positions are omitted for clarity. Unmutated positions (matching the consensus sequence) are denoted by periods, and a '-' sign indicates deletions. Naming of FoTeRs is associated with the telomere number. For example, FoTeR 9 means this FoTeR is located in TEL9 (the start of chromosome 5).
DOI: 10.6084/m9.figshare.31199238.v1
title: Additional file 6 of FoTeRs: a novel family of telomere-associated retrotransposons in Fusarium oxysporum

description: Supplementary Material 6. Table S6. Mutational analysis of FoTeR ORFs across F. oxysporum strains. A) Extended details of Table 5 show strain-specific mutation profiles across FoTeR ORFs. B–H) Strain-specific alignments of FoTeR ORFs from the following strains: B) II5, C) BRIP62122, D) GL1080, E) GL1315, F) GL1381, G) MAFF727510, and H) Fo47. The FoTeR ORF sequences from each strain were aligned using ClustalOmega to detect mutations compared to its consensus sequence. Only nucleotide positions with at least one mismatch are shown; conserved positions are omitted for clarity. Unmutated positions (matching the consensus sequence) are denoted by periods, and a '-' sign indicates deletions. Naming of FoTeRs is associated with the telomere number. For example, FoTeR 9 means this FoTeR is located in TEL9 (the start of chromosome 5).
DOI: 10.6084/m9.figshare.31199241
title: Additional file 7 of FoTeRs: a novel family of telomere-associated retrotransposons in Fusarium oxysporum

description: Supplementary Material 7. Table S7. Pairwise dN, dS, and dN/dS values for FoTeR-RT ORF sequences within and between F. oxysporum strains. A) Summary statistics of pairwise dN/dS comparisons among intact FoTeR ORFs. B) Detailed pairwise comparisons showing the raw dN, dS, and dN/dS values for each pair of sequences.
DOI: 10.6084/m9.figshare.31199241.v1
title: Additional file 7 of FoTeRs: a novel family of telomere-associated retrotransposons in Fusarium oxysporum

description: Supplementary Material 7. Table S7. Pairwise dN, dS, and dN/dS values for FoTeR-RT ORF sequences within and between F. oxysporum strains. A) Summary statistics of pairwise dN/dS comparisons among intact FoTeR ORFs. B) Detailed pairwise comparisons showing the raw dN, dS, and dN/dS values for each pair of sequences.
DOI: 10.6084/m9.figshare.31199255
title: Additional file 1 of Stress-driven faulting with weak overpressure in the Tokara Islands, Ryukyu Arc: implications for fault reactivation under backarc extension

description: Supplementary Material 1. Table S1 F-net data used in this study.
DOI: 10.6084/m9.figshare.31199255.v1
title: Additional file 1 of Stress-driven faulting with weak overpressure in the Tokara Islands, Ryukyu Arc: implications for fault reactivation under backarc extension

description: Supplementary Material 1. Table S1 F-net data used in this study.
DOI: 10.15468/dl.kqcgry
title: Occurrence Download

description: A dataset containing 3846 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Thorichthys"
 ]
}

 The dataset includes 3846 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001285-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.heugw7
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cryptospora falcata",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 115 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001287-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31199313
title: Additional file 1 of Cardioprotective effect of diabetic medication on cancer patients undergoing proven cardiotoxic chemotherapy: a systematic review and meta-analysis

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.31199313.v1
title: Additional file 1 of Cardioprotective effect of diabetic medication on cancer patients undergoing proven cardiotoxic chemotherapy: a systematic review and meta-analysis

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.31199340
title: Additional file 1 of Interpretable machine learning model for predicting 5-Year postoperative recurrence risk in patients with stage III colon cancer using preoperative laboratory tests: a two-centre study

description: Supplementary Material 1. Table S1: Results of Multiple Imputation for Features with Missing Data. Table S2. Univariate Analysis of Clinical and Pathological Features and Laboratory Tests in the Training Set (P-values ≥ 0.05). Table S3. The result of the random forest with five-fold cross-validation.
DOI: 10.6084/m9.figshare.31199340.v1
title: Additional file 1 of Interpretable machine learning model for predicting 5-Year postoperative recurrence risk in patients with stage III colon cancer using preoperative laboratory tests: a two-centre study

description: Supplementary Material 1. Table S1: Results of Multiple Imputation for Features with Missing Data. Table S2. Univariate Analysis of Clinical and Pathological Features and Laboratory Tests in the Training Set (P-values ≥ 0.05). Table S3. The result of the random forest with five-fold cross-validation.