cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13939334
title: Silicon time-resolved pump-probe spectroscopic ellipsometry data files

description: Data available

Transient pseudo dielectric function of silicon measured with atime-resolved pump-probe spectroscopic ellipsometry.

Naming of the files

In the .zip file that can be downloaded here, there are several folders.

Each are named as Si_XXXnm_YYY_uJ where XXX is the pump wavelength and YYY is the energy of the pump.

In each folder there are two files.



diffpseudoepsilon1.txt- values of the real part of the transient pseudo dielectric function.

diffpseudoepsilon2.txt- values of the real part of the transient pseudo dielectric function.


Structure of the files

Each file has the same structure:

The first row an array time delays in picosecond for which measurements have been performed.

In the rest of rows, the first element of the array are the photon energy, while the rest of the elements are the values of the transient dielectric function at each of the elements in the time delay array.

Example:

time delay       t1                         t2                           t3

E1(eV)      <∆e1>(E1, t1)        <∆e1>(E1, t2)        <∆e1>(E1, t3)

E2(eV)     <∆e1>(E2, t1)       <∆e1>(E2, t2)       <∆e1>(E2, t3)

E3(eV)     <∆e1>(E3, t1)       <∆e1>(E3, t2)       <∆e1>(E3, t3)
DOI: 10.15468/dl.xsufp4
title: Occurrence Download

description: A dataset containing 64535 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Berberis thunbergii",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 64535 records from 376 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012119-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93zafe
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Functional traits related to fire in woody species from Barranca del Cupatitzio National Park"
 ]
}

 The dataset includes 182 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012186-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/vefa-5va4
title: Organic tracers at Beograd Ada Marina

description: Measurement of Organic tracers at Beograd Ada Marina
DOI: 10.48597/29pw-bqw6
title: Measurement of Organic tracers at Beograd Ada Marina

description: Measurement of Organic tracers at Beograd Ada Marina
DOI: 10.48597/2ftt-e3hc
title: OC/EC at Bor Gradski park

description: Measurement of OC/EC at Bor Gradski park
DOI: 10.48597/86tc-6vgf
title: Measurement of OC/EC at Bor Gradski park

description: Measurement of OC/EC at Bor Gradski park
DOI: 10.48597/29bn-buex
title: Measurement of OC/EC at Beograd Ada Marina

description: Measurement of OC/EC at Beograd Ada Marina
DOI: 10.48597/8cvw-vw9b
title: OC/EC at Beograd Ada Marina

description: Measurement of OC/EC at Beograd Ada Marina
DOI: 10.48597/yeg4-bm3u
title: Greenhouse gases (other halogenated), additional halogenated compunds and VOC (hydrocarbons) at TMNT09 Vielsalm

description: Measurement of Greenhouse gases (other halogenated), additional halogenated compunds and VOC (hydrocarbons) at TMNT09 Vielsalm
DOI: 10.48597/evtt-3jg3
title: Measurement of Greenhouse gases (other halogenated), additional halogenated compunds and VOC (hydrocarbons) at TMNT09 Vielsalm

description: Measurement of Greenhouse gases (other halogenated), additional halogenated compunds and VOC (hydrocarbons) at TMNT09 Vielsalm
DOI: 10.48597/qmgf-74cu
title: Organic tracers at Bor Gradski park

description: Measurement of Organic tracers at Bor Gradski park
DOI: 10.48597/8cd7-ueqp
title: Measurement of Organic tracers at Bor Gradski park

description: Measurement of Organic tracers at Bor Gradski park
DOI: 10.48597/8usz-edc3
title: Measurement of OC/EC at Beograd Ada Marina

description: Measurement of OC/EC at Beograd Ada Marina
DOI: 10.48597/ghf4-q3x8
title: Measurement of OC/EC at Bor Gradski park

description: Measurement of OC/EC at Bor Gradski park
DOI: 10.48597/2sqk-atkq
title: Organic tracers at Beograd Ada Marina

description: Measurement of Organic tracers at Beograd Ada Marina
DOI: 10.48597/zkvu-unq8
title: Organic tracers at Bor Gradski park

description: Measurement of Organic tracers at Bor Gradski park
DOI: 10.48597/2f72-frkj
title: Measurement of Organic tracers at Beograd Ada Marina

description: Measurement of Organic tracers at Beograd Ada Marina
DOI: 10.48597/64ny-z75b
title: Measurement of Organic tracers at Bor Gradski park

description: Measurement of Organic tracers at Bor Gradski park
DOI: 10.48597/rud7-be8n
title: Measurement of Organic tracers at Bor Gradski park

description: Measurement of Organic tracers at Bor Gradski park
DOI: 10.48597/rg6c-kkxa
title: Measurement of Organic tracers at Bor Gradski park

description: Measurement of Organic tracers at Bor Gradski park
DOI: 10.48597/sxd5-8ccm
title: Measurement of Organic tracers at Beograd Ada Marina

description: Measurement of Organic tracers at Beograd Ada Marina
DOI: 10.48597/zqws-9j62
title: Measurement of Organic tracers at Beograd Ada Marina

description: Measurement of Organic tracers at Beograd Ada Marina
DOI: 10.48597/khdu-efcs
title: Measurement of Greenhouse gases (other halogenated), additional halogenated compunds and VOC (hydrocarbons) at TMNT09 Vielsalm

description: Measurement of Greenhouse gases (other halogenated), additional halogenated compunds and VOC (hydrocarbons) at TMNT09 Vielsalm
DOI: 10.15468/dl.jhgf8z
title: Occurrence Download

description: A dataset containing 135492 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galium verum",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 135492 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012144-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13881574
title: Nuremberg Letterbooks: A Multi-Transcriptional Dataset of Early 15th Century Manuscripts for Document Analysis

description: This dataset contains the images and labels of the Nuremberg Letterbooks dataset.

It consists of four books (books 2 - 5) with line-wise transcriptions. Three kinds of transcriptions are reported: basic, regularized, and diplomatic, with additional expanded abbreviations. 

Code templates for text verification and writer verification are available at:



https://github.com/M4rt1nM4yr/letterbooks_text_verification

https://github.com/M4rt1nM4yr/letterbooks_writer_verification


When using this dataset, please cite: M. Mayr, J. Krenz, K. Neumeier, A. Bub, S. Bürcky, N. Brolich, K. Herbers, M. Habermann, P. Fleischmann, A. Maier, and V. Christlein. Nuremberg Letterbooks: A Multi-Transcriptional Dataset of Early 15th Century Manuscripts for Document Analysis. Sci Data 12, 811 (2025).https://doi.org/10.1038/s41597-025-05144-z
DOI: 10.5281/zenodo.13881575
title: Nuremberg Letterbooks: A Multi-Transcriptional Dataset of Early 15th Century Manuscripts for Document Analysis

description: This dataset contains the images and labels of the Nuremberg Letterbooks dataset.

It consists of four books (books 2 - 5) with line-wise transcriptions. Three kinds of transcriptions are reported: basic, regularized, and diplomatic, with additional expanded abbreviations. 

Code templates for text verification and writer verification are available at:



https://github.com/M4rt1nM4yr/letterbooks_text_verification

https://github.com/M4rt1nM4yr/letterbooks_writer_verification


When using this dataset, please cite: M. Mayr, J. Krenz, K. Neumeier, A. Bub, S. Bürcky, N. Brolich, K. Herbers, M. Habermann, P. Fleischmann, A. Maier, and V. Christlein. Nuremberg Letterbooks: A Multi-Transcriptional Dataset of Early 15th Century Manuscripts for Document Analysis. Sci Data 12, 811 (2025).https://doi.org/10.1038/s41597-025-05144-z
DOI: 10.15468/dl.ka48ta
title: Occurrence Download

description: A dataset containing 78898 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-89.09800 32.83177,-82.45241 32.83177,-82.45241 35.48723,-89.09800 35.48723,-89.09800 32.83177))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae",
 "Year 2025-2025"
 ]
}

 The dataset includes 78898 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012154-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b3m32q
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong, Macao)",
 "GbifRegion is Asia",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pavo cristatus"
 ]
}

 The dataset includes 79 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012189-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q76gan
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-6.76776 54.51998,-6.52152 54.51998,-6.52152 54.61844,-6.76776 54.61844,-6.76776 54.51998))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus hypnorum"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012188-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wvah5h
title: Occurrence Download

description: A dataset containing 7252 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lipophrys pholis"
 ]
}

 The dataset includes 7252 records from 175 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012190-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17193301
title: Nuremberg Letterbooks: Linguistically annotated texts

description: As part of the DFG funded edition project "Kommunikation und Sprache im Reich. Die Nürnberger Briefbücher im 15. Jahrhundert" a selection of 180 texts of the Nuremberg letterbooks from the years of 1408 to 1423 were linguistically annotated and prepared for use with the annotation tool ANNIS. For further information, please refer to the project website.
DOI: 10.5281/zenodo.17193300
title: Nuremberg Letterbooks: Linguistically annotated texts

description: As part of the DFG funded edition project "Kommunikation und Sprache im Reich. Die Nürnberger Briefbücher im 15. Jahrhundert" a selection of 180 texts of the Nuremberg letterbooks from the years of 1408 to 1423 were linguistically annotated and prepared for use with the annotation tool ANNIS. For further information, please refer to the project website.
DOI: 10.15468/dl.2zatc2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erodium chium",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012191-250920141307145/datasets/export for details.
DOI: 10.15468/dl.8fdztu
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erodium chium",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012192-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v7cams
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erodium chium",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012194-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p19th8w5
title: Range-wide probability of persistence of Ornate Chorus Frog populations and a habitat suitability map

description: Data include the probability of persistence of 407 Ornate Chorus Frog (Pseudacris ornata) populations across the distribution, as well as the mean habitat suitability, mean winter precipitation, and proportion of the surface that is impervious within each buffered population. Data also include the probability of persistence of Ornate Chorus Frog populations when different buffer sizes are used to estimate sensitivity to the choice of buffer radius. Data include a raster file representing relative habitat suitability for Ornate Chorus Frogs.
DOI: 10.5281/zenodo.14450261
title: Heliconiini occurrence database

description: Summary

This repository contains georeferenced occurrence data for heliconiine butterflies needed to reproduce the analyses presented in this research paper:

“Pérochon et al., 2025 - Müllerian mimicry in Neotropical butterflies: One mimicry ring to bring them all and in the jungle bind them” 

 




Associated archives

Distribution maps generated from distribution models ran on these occurrences data are available in an other associated archive: https://doi.org/10.5281/zenodo.10903661.

Phenotypic classification applied in this study can be found in this archive: https://doi.org/10.5281/zenodo.10903197.

Scripts to reproduce these maps are available on Github at https://github.com/EddiePerochon/Heliconiini_Diversity.

 




Contents

This repository contains an Excel file with 67,563 curated georeferenced occurrence records and associated metadata in separated tabs.

 




Contact

:email: For any questions, contact the corresponding author: Maël Doré

 

How to cite

Please cite this research article as:

Pérochon, E., Rosser, N., Kozak, K., McMillan, W.O., Huertas, B., Mallet, J., Ready J., Willmott, K., Elias, M. & Doré, M. (2025). Müllerian mimicry in Neotropical butterflies: One mimicry ring to bring them all and in the jungle bind them. In prep. https://doi.org/10.1111/000000
DOI: 10.5281/zenodo.17193306
title: DS.RCER_Human_Tracking_of_mobile_robot.02.bag

description: The mobile robot, equipped with an onboard camera, successfully recognized and followed the human. This was tested on the field at Laimburg.
DOI: 10.5281/zenodo.17193307
title: DS.RCER_Human_Tracking_of_mobile_robot.02.bag

description: The mobile robot, equipped with an onboard camera, successfully recognized and followed the human. This was tested on the field at Laimburg.
DOI: 10.5281/zenodo.14449335
title: Heliconiini distribution maps

description: Summary

This repository contains predicted distribution maps for heliconiine butterflies issued from the analyses presented in this research paper:

“Pérochon et al., 2025 - Müllerian mimicry in Neotropical butterflies: One mimicry ring to bring them all and in the jungle bind them” https://doi.org/10.1111/000000

 




Associated archives

Maps are derived from distribution models run on occurrences data available in an other associated archive: https://doi.org/10.5281/zenodo.10906853.

Phenotypic classification applied in this study can be found in this associated archive: https://doi.org/10.5281/zenodo.10903197.

Scripts to reproduce these maps are available on Github at https://github.com/EddiePerochon/Heliconiini_Diversity.

 




Contents

This repository contains three folders with multiple maps in PDF format:





:file_folder: Subspecies_maps: 439 maps of habitat suitability depicting current distribution of each heliconiine subspecies.




:file_folder: OMU_maps: 141 maps of habitat suitability depicting current distribution of each OMU (Operational Mimicry Unit as set of subspecies within the same species that shared the same mimetic wing pattern).




:file_folder: Species_maps: 74 maps of habitat suitability depicting current distribution of each heliconiine species.




:file_folder: Phenotypic_group_maps/Range_maps: 38 maps depicting current distribution of phenotypic group (including all OMUs sharing the same wing color pattern).




:file_folder: Phenotypic_group_maps/Richness_maps: 38 maps of local richness for each phenotypic group estimated as the number of local species/OMUs sharing this wing color pattern.






 

Contact

:email: For any questions, contact the corresponding author: Maël Doré

 




How to cite

Please cite this research article as:

Pérochon, E., Rosser, N., Kozak, K., McMillan, W.O., Huertas, B., Mallet, J., Ready J., Willmott, K., Elias, M. & Doré, M. (2025). Müllerian mimicry in Neotropical butterflies: One mimicry ring to bring them all and in the jungle bind them. In prep. https://doi.org/10.1111/000000
DOI: 10.15468/dl.yaer9e
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guinea",
 "OccurrenceStatus is Present",
 "TaxonKey is Parkia biglobosa"
 ]
}

 The dataset includes 127 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012200-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p7j5yp
title: Occurrence Download

description: A dataset containing 377 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tracheophyta)",
 "Geometry POLYGON ((11.33 49.77, 11.35 49.77, 11.35 49.79, 11.33 49.79, 11.33 49.77))"
 ]
}

 The dataset includes 377 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012201-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5067/measures/lste/cam5k30emclim.003
title: Combined ASTER and MODIS Emissivity database over Land (CAMEL) Emissivity Climatology Monthly Global 0.05Deg V003
DOI: 10.5281/zenodo.17193287
title: Test data for nf-updhmm nextflow pipeline

description: nf-UPDhmm Test Data and Reference Files

The dataset provided for the nf-UPDhmm pipeline includes both test VCF files and reference BED files required for preprocessing and execution.

1. Test data – VCF files

VCF files from 1000 Genomes Project. These samples were extracted from the publicly available phased SNV/INDEL VCFs release (https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/1000G_2504_high_coverage/).





mother.vcf.gz: HG00404




father.vcf.gz: HG00403




proband_control.vcf.gz: HG00405




proband_heterodisomy.vcf.gz: HG00405 with a simulated heterodisomy event introduced.



Note: To ensure computational efficiency, all VCFs are restricted to this region (chr21:29222885-34430153). This allows the pipeline test to run quickly while preserving the structure of a real trio dataset.

2. Reference files – BEDs

In addition to the test VCFs, we provide BED files that define regions excluded during preprocessing. These are reference files, not test data, but they are required for the correct execution of the nf-UPDhmm pipeline.

The files are organized by reference genome version:

-prefix "hg19"

-prefix "hg38"





centromeres.bed





Centromeric and pericentromeric regions (±2 Mb).




Sources:





hg19: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/cytoBand.txt.gz




hg38: https://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/centromeres.txt.gz








segmental_duplications.bed





Annotated segmental duplications.




Sources:





hg19: https://hgdownload.soe.ucsc.edu/goldenPath/hg19/database/genomicSuperDups.txt.gz




hg38: https://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/genomicSuperDups.txt.gz








hla_kir.bed





Highly polymorphic immune-related loci.




Coordinates used:





hg19:





HLA: chr6:28,477,797–33,448,354




KIR: chr19:55,228,188–55,383,188






hg38:





HLA: chr6:28,510,120–33,480,577




KIR: chr19:54,025,634–55,084,318










excluded_regions.bed





A combined file merging all of the above (centromeres, segmental duplications, HLA, and KIR).
DOI: 10.5281/zenodo.17193237
title: Comprehensibility of feature dependency in configurable system using #ifdef

description: Conditional compilation is often used to implement variability in configurable systems. This technique relies on #ifdefs to delimit feature code. Previous studies have shown that #ifdefs may hinder code comprehensibility. However, they did not explicitly take feature dependencies into account. Feature dependency occurs when different features refer to the same program element, such as a variable. Comprehensibility may be even more affected in the presence of feature dependency, as the developer must reason about different scenarios affecting the same variable. Aim: Our goal is to understand how feature dependency affects the comprehensibility of configurable system source code.  Method: We conducted two complementary empirical studies. In Study 1 we carried out an experiment in which 30 developers debugged programs with different types of feature dependency. Each program included a different type of feature dependency: global, intraprocedural or interprocedural. We used an eye-tracking device to record developers' gaze movements while they debugged programs. Study 1, however, has two main limitations. Firstly, its programs contain only one type of feature dependency each, while, in real systems, a same program file usually includes more than one type of feature dependency. Secondly, Study 1 does not compare programs with and without feature dependency. In Study 1 we did not compare pieces of source code with and without feature dependency. To minimize those limitations, in this paper we complement Study 1 by means of Study 2. Forty-six developers responded to a web-based study. They executed tasks in which they had to analyze programs containing #ifdef with and without feature dependency. Each program with feature dependency contained all the three types of features dependency as frequently occurs in real configurable systems. Results: In Study 1, debugging programs with #ifdef and global or interprocedural dependency required more time and higher visual effort than intraprocedural dependency. Study 2, analyzing programs containing #ifdef and feature dependency required more time than programs containing #ifdef but without feature dependency. Conclusion: Our study showed that #ifdefs affect comprehensibility of configurable systems in different degrees depending on the presence of feature dependency or type of feature dependency.