cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17831909
title: ERGA-BGE reference genome of Hirudo verbana, a once neglected freshwater haematophagous European medicinal leech

description: The following files were used to generate statistics, tables and figures in the genome report: "ERGA-BGE reference genome of Hirudo verbana, a once neglected freshwater haematophagous European medicinal leech".

 

assembly_busco.txt was used to report completeness of the genome assembly

annotation_busco.txt and annotation_omark.txt were used to report completeness and consistency of the genome annotation

assembly_stats.txt and annotation_stats.txt were used to report basic statistics about the genome assembly and annotation, respectively

merqury_completeness.txt and merqury_qv.txt were used to report completeness and accuracy of the genome assembly, respectively

blobdir.tgz was used to generate Figure 1

hic.cool was used to generate Figure 2
DOI: 10.15468/dl.g8kqpn
title: Occurrence Download

description: A dataset containing 905193 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Adenocarpus gibbsianus, Alchemilla fontqueri, Allium pruinatum, Anthemis bourgaei, Arenaria nevadensis, Artemisia granatensis, Artemisia umbelliformis, Astragalus edulis, Astragalus tremolsianus, Atropa baetica, Carduus myriacanthus, Centaurea gadorensis, Centaurea kunkelii, Coronopus navasii, Crepis granatensis, Culcita macrocarpa, Cynomorium coccineum, Dianthus hinoxianus, Diplazium caudatum, Dryopteris tyrrhena, Equisetum palustre, Erigeron frigidus, Erodium astragaloides, Erodium cazorlanum, Erodium rupicola, Euonymus latifolius, Hieracium texedense, Hippocrepis prostrata, Hormathophylla baetica, Hymenostemma pseudanthemis, Hypochaeris salzmanniana, Isoetes durieui, Jurinea fontqueri, Laserpitium longiradium, Limonium estevei, Limonium malacitanum, Linaria benitoi, Linaria glacialis, Linaria lamarckii, Linaria tursica, Lithodora nitida, Marsilea batardae, Marsilea strigosa, Moehringia fontqueri, Narcissus longispathus, Narcissus nevadensis, Ononis azcaratei, Onopordum dissectum, Phyllitis sagittata, Picris willkommii, Pinguicula nevadensis, Plantago algarbiensis, Psilotum nudum, Pteris incompleta, Rosmarinus tomentosus, Senecio elodes, Seseli intricatum, Silene fernandezii, Sonchus pustulatus, Taraxacum gaditanum, Thymus albicans, Ulex canescens, Vandenboschia speciosa, Verbascum charidemi, Viola cazorlensis, Vulpia fontquerana, Abies pinsapo, Betula pendula, Campanula specularioides, Iberis carnosa embergeri, Juniperus oxycedrus, Aquilegia pyrenaica, Centaurea pulvinata, Artemisia alba, Gentiana sierrae, Veronica tenuifolia, Polycarpon polycarpoides, Senecio nevadensis, Papaver, Juniperus phoenicea, Rhamnaceae, Eryngium, Tephroseris elodes, Leucanthemum arundanum, Moehringia intricata, Quercus alpestris, Euphorbia nevadensis, Leontodon boryi, Maytenus senegalensis, Trisetum antonii-josephii)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2020"
 ]
}

 The dataset includes 905193 records from 2002 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037214-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nn84f4
title: Occurrence Download

description: A dataset containing 183 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Oecomys auyantepui Tate, 1939"
 ]
}

 The dataset includes 183 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066053-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cdo1vo
title: Occurrence Download

description: A dataset containing 3937284 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Florabank1 - A grid-based database on vascular plant distribution in the northern part of Belgium (Flanders and the Brussels Capital region)"
 ]
}

 The dataset includes 3937284 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028415-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ryak2k
title: Occurrence Download

description: A dataset containing 141 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Chalinolobus tuberculatus (Forster, 1844)"
 ]
}

 The dataset includes 141 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066076-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.osfhvl
title: Occurrence Download

description: A dataset containing 243585 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-93.80127 41.44273,-84.79248 41.37681,-84.08936 48.57479,-93.5376 48.16609,-93.80127 41.44273))",
 "TaxonKey is Reptilia"
 ]
}

 The dataset includes 243585 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028416-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4vrzcv
title: Occurrence Download

description: A dataset containing 483714 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Danaus plexippus (Linnaeus, 1758)"
 ]
}

 The dataset includes 483714 records from 207 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0190189-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.84n477
title: Occurrence Download

description: A dataset containing 2034 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liolaemus darwinii (Bell, 1843)"
 ]
}

 The dataset includes 2034 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0206497-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p8tuyt
title: Occurrence Download

description: A dataset containing 12061 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-93.80127 41.44273,-84.79248 41.37681,-84.08936 48.57479,-93.5376 48.16609,-93.80127 41.44273))",
 "HasCoordinate is true",
 "TaxonKey is Amphibia",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12061 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028418-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k2kgqy
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Campanula betulifolia K.Koch"
 ]
}

 The dataset includes 121 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066121-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xrcwjm
title: Occurrence Download

description: A dataset containing 22560 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Field Museum of Natural History (Zoology) Insect, Arachnid and Myriapod Collection",
 "TaxonKey is Staphylinidae"
 ]
}

 The dataset includes 22560 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028418-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ywzwhx
title: Occurrence Download

description: A dataset containing 8568582 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 8568582 records from 2032 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0167933-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m2ggcf
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hibiscus ludwigii Eckl. & Zeyh."
 ]
}

 The dataset includes 109 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006653-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6vn6rb
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hibiscus ludwigii Eckl. & Zeyh."
 ]
}

 The dataset includes 109 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006654-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12606367
title: Dataset
DOI: 10.5281/zenodo.12606368
title: Dataset
DOI: 10.6084/m9.figshare.26135500
title: Supplementary Material for: Omics-based investigation on mechanisms controlling cellular internalization of keratin monomers during biodegradation by Stenotrophomonas maltophilia DHHJ

description: Introduction: The global poultry industry produces millions of tons of waste feathers every year, which can be degraded to make feed, fertilizer, and daily chemicals. However, feather degradation is a complex process that is not yet fully understood. This results in low degradation efficiency and difficulty in industrial applications. Omics-driven system biology research offers an effective solution to quickly and comprehensively understand the molecules and mechanisms involved in a metabolic pathway. Methods: In the early stage of this process, feathers are hydrolyzed into water-soluble keratin monomers. In this study, we used high-throughput RNA-seq technology to analyze the genes involved in the internalization and degradation of keratin monomers in S. maltophilia DHHJ strain cells. Moreover, we used Co-IP with LC-MS/MS technology to search for proteins that interact with recombinant keratin monomers. Results: We discovered TonB transports and molecular chaperones associating with the keratin monomer, which may play a crucial role in the transmembrane transport of keratin. Meanwhile, multiple proteases belonging to distinct families were identified as binding partners of keratin monomers, among which ATPases associated with diverse cellular activities (AAA+) family proteases are overrepresented. Four genes, including JJL50_15620, JJL50_17955 (TonB-dependent receptors), JJL50_03260 (ABC transporter ATP-binding protein), and JJL50_20035 (ABC transporter substrate-binding protein), were selected as representatives for determining their expressions under different culture conditions using qRT-PCR and they were found to be upregulated in response to keratin degradation consistent with the data from RNA-seq and Co-IP. Conclusion: This study highlights the complexity of keratin biodegradation in S. maltophilia DHHJ, in which multiple pathways are involved such as protein folding, protein transport, and several protease systems. Our findings provide new insights into the mechanism of feather degradation.
DOI: 10.15468/dl.b2j62h
title: Occurrence Download

description: A dataset containing 40534764 species occurrences available in GBIF matching the query:
(Query is too complex. Can be viewed on the landing page)

 The dataset includes 40534764 records from 8493 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006642-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f2znfx
title: Occurrence Download

description: A dataset containing 1461 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Yoldiidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1461 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059100-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.622zgr
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Brazil, Uruguay)",
 "OccurrenceStatus is Present",
 "TaxonKey is Ctenomys pearsoni Lessa & Langguth, 1983",
 "Year 2018-2025"
 ]
}

 The dataset includes 33 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059101-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3c7tcd
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rodriguezia ricii R.Vásquez & Dodson"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0191895-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g77mya
title: Occurrence Download

description: A dataset containing 417 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Camptotheca acuminata Decne."
 ]
}

 The dataset includes 417 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0112806-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s8rtn9
title: Occurrence Download

description: A dataset listing the 6 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spathodea campanulata Beauverd"
 ]
}

 The dataset's 6 records were derived from 418 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050615-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nh6jvp
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scaphyglottis laevilabium Ames"
 ]
}

 The dataset includes 34 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0191894-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.et90dq
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Allium neriniflorum (Herb.) G.Don",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002443-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bbzrgx
title: Occurrence Download

description: A dataset containing 10680406 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Japan",
 "OccurrenceStatus is Present",
 "Year 1000-2024"
 ]
}

 The dataset includes 10680406 records from 2423 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014230-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15490552
title: Questionnaire Dataset for The Study on Determinants of Continuous Use Intention for Public Transport Mobile Apps Among Jakarta Passengers

description: This dataset is important for the study Determinants of Continuous Use Intention for Public Transport Mobile Apps Among Jakarta Passengers.
DOI: 10.5281/zenodo.15490553
title: Questionnaire Dataset for The Study on Determinants of Continuous Use Intention for Public Transport Mobile Apps Among Jakarta Passengers

description: This dataset is important for the study Determinants of Continuous Use Intention for Public Transport Mobile Apps Among Jakarta Passengers.
DOI: 10.15468/dl.mhzp74
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((3.16129 42.44082,-1.69706 41.03786,-5.31272 35.90112,2.89109 37.32245,4.1653 42.31078,3.16129 42.44082))",
 "OccurrenceStatus is Present",
 "TaxonKey is Pteroplatytrygon violacea (Bonaparte, 1832)"
 ]
}

 The dataset includes 42 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024512-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13891417
title: Harnessing coupled nanolasers near exceptional points for directional emission - Figures Data

description: Each figure's generative Matlab script is placed in a separate folder, along with the associated data.
DOI: 10.5281/zenodo.13891418
title: Harnessing coupled nanolasers near exceptional points for directional emission - Figures Data

description: Each figure's generative Matlab script is placed in a separate folder, along with the associated data.
DOI: 10.15468/dl.qyhtj9
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 "TaxonKey is Cinara pinimaritimae (Dufour, 1833)"
 ]
}

 The dataset includes 34 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041359-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8jb7uf
title: Occurrence Download

description: A dataset containing 344 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 "TaxonKey is Orthosia garmani Grote, 1879"
 ]
}

 The dataset includes 344 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041360-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aeejv2
title: Occurrence Download

description: A dataset containing 438 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stenocereus pruinosus (Otto ex Pfeiff.) Buxb.",
 "Geometry POLYGON((-120.81921 6.30411,-76.28649 6.30411,-76.28649 36.01485,-120.81921 36.01485,-120.81921 6.30411))",
 "BasisOfRecord is one of (Human Observation, Specimen)"
 ]
}

 The dataset includes 438 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041361-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7drdc4
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-121.55917 30.27145,-119.75655 -59.49894,-27.4625 -59.49894,-28.18354 31.35302,-121.55917 30.27145))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Agathistoma lividomaculatum (C.B.Adams, 1845)"
 ]
}

 The dataset includes 35 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041362-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26531713
title: Genome annotation of the assembly for <i>Fulvetta ruficapilla </i>(Fruf_v1)

description: Genome annotation of the assembly for <i>Fulvetta ruficapilla</i> (Fruf_v1).This annotation includes aonnotation for protein-coding genes, ncRNAs, and repetitive elements in three different files in the gff format. The associated genome assembly has been deposited in the GWH database under the accession number GWHETLV00000000.1, publicly available at https://ngdc.cncb.ac.cn/gwh/Assembly/85202/show as well as in the GenBank under the accession JBGGOM000000000, publicly available at https://identifiers.org/ncbi/insdc.gca:GCA_042477295.1This version of dataset is provided a natural picture of the species <i>Fulvetta ruficapilla</i> as the cover image, which is taken by authors of the dataset.
DOI: 10.6084/m9.figshare.26531713.v1
title: Genome annotation of the assembly for <i>Fulvetta ruficapilla </i>(Fruf_v1)

description: Genome annotation of the assembly for <i>Fulvetta ruficapilla</i> (Fruf_v1).This annotation includes aonnotation for protein-coding genes, ncRNAs, and repetitive elements in three different files in the gff format. The associated genome assembly has been deposited in the GWH database under the accession number GWHETLV00000000.1, publicly available at https://ngdc.cncb.ac.cn/gwh/Assembly/85202/show as well as in the GenBank under the accession JBGGOM000000000, publicly available at https://identifiers.org/ncbi/insdc.gca:GCA_042477295.1This version of dataset is provided a natural picture of the species <i>Fulvetta ruficapilla</i> as the cover image, which is taken by authors of the dataset.