cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/j5krtjfj6y
title: DNA methylation data of hematopoietic transplantation patients

description: The analysis was performed to decide if the age of the recipient body affects epigenetic aging in the donor cells.

All raw data was processed starting from .idat files with R for this analysis. Based on a recent study that compared different DNA methylation raw data processing pipelines for epigenetic clocks 3 we decided on using ENmix with the suggested optimal parameters for epigenetic clocks from the comparison: Out-of-bag background correction, RELIC dye-bias correction, quantile normalization separately for methylated and unmethylated intensities and RCP correction of probe design type bias. The folder with raw .idat files was first loaded with ENmix::readidat() then profiled by ENmix:qcinfo() with default settings. Loaded data was then sequentially applied to ENmix::preprocessENmix(), ENmix::norm.quantile() and ENmix::rcp() with the above described parameters. ENmix::qcfilter() was then applied, removing very low quality CpGs and samples detected by the qcinfo() function and imputing missing values. The result from this pipeline is a table of DNA methylation beta values. This pipeline was run separately for each batch of measurements.

Included in this Mendeley Data collection is the processed and normalized (as described above) DNA methlation beta values for all samples. The batches are exported as separate files. The comRand.csv file contains a table where the "randID" column corresponds to columns in the batchX.csv files. This table also has all the required information about the ages of the donors and recipients of the hematopoietic transplantation (at time of transplantation) and the age of the measured cells at the time of measurement (column ageCells).
DOI: 10.17632/jcysg2h3dg
title: Stock Investor and Personality

description: Raw data of investors categorized by their 5 traits personality types. The dependent variable is stock retention
DOI: 10.6084/m9.figshare.28758947.v1
title: Supplementary Material for: A Bioinformatic Investigation into a Unique Human FOXM1 Exon Variant and its Relevance to Gyrencephaly.

description: Gyrification is a shared phenotype of brain development across many species. The identification of human- and primate-specific genes is a topic of great research interest to uncover the genetic mechanisms that drive human gyrification. Here we investigated a human transcript variant of FOXM1 with a unique ninth exon proposed to have a crucial role in primate gyrification. Through comprehensive bioinformatic analyses utilising available deposited sequencing data, we aimed to determine the degree of conservation of human FOXM1 exon 9 across a wide range of species, with a particular focus on gyrencephalic primates. Surprisingly, our results revealed that the exon is only partially detected in four other primates challenging its presumed conservation in humans, apes, and other primates. Furthermore, we aimed to determine the degree of conservation of the remaining regions of FOXM1 across a subset of gyrencephalic and lissencephalic species. The remaining regions of FOXM1 had a remarkably high level of conservation, and given its role in regulating proliferation and differentiation, the results suggested that FOXM1 may be required for early brain development across all species. However, the sporadic presence of the exon 9 sequence even in other gyrencephalic primates raises questions about its indispensability in the process of gyrification. Therefore, we conclude that the FOXM1 transcript variant comprising the exon 9 sequence in its entirety could be more appropriately reclassified as a human-specific cortical folding variant not found in other species. This research lays the foundation for further investigating the role of FOXM1 exon 9 in human gyrification and brain development.
DOI: 10.17632/4b84p34g9d
title: Social support and sports social behavior

description: Objective This study aims to explore the relationship between social support and behavior in sport, as well as the underlying mechanisms among college students. Methods A questionnaire survey was conducted involving 1,157 college students (Mean ± SD = 23.345±0.647 Age, 54.278% male), utilizing the Perceived Social Support Scale (PSSS), Prosocial and Antisocial Behavior in Sport Scale (PABSS), Social Anxiety Scale (SAS) and Connor-Davidson Resilience Scale (CD-RISC). Results (1) Perceived social support was positively correlated with prosocial behavior in sport (r = 0.349, p &lt; 0.05) and negatively correlated with antisocial behavior in sport (r = -0.153, p &lt; 0.05). (2) Perceived social support positively predicted prosocial behavior in sport (β = 0.323) and negatively predicted antisocial behavior in sport (β = -0.169). Social anxiety mediated the relationship between perceived social support and antisocial behavior in sport (β = 0.175, β = -0.095). (3) Psychological Resilience significantly moderated the relationship between perceived social support and social anxiety in the first half of the model. These results highlight the role of social anxiety as a mediator of college students' understanding of social support and social behavior in sports , and the moderating effect of psychological toughness on social anxiety.
DOI: 10.6084/m9.figshare.15657297.v1
title: Supplementary Material for: The Prognostic Impact of Tumor Differentiation on Recurrence and Survival after Resection of Hepatocellular Carcinoma Is Dependent on Tumor Size

description: <b><i>Introduction:</i></b> The present study aimed to evaluate the effect of poor differentiation and tumor size on survival outcome after hepatic resection of hepatocellular carcinoma (HCC). <b><i>Methods:</i></b> A total of 1,107 patients who underwent initial and curative hepatic resection for HCC without macroscopic vascular invasion participated in the study. Using the multivariable Cox proportional hazards regression model, we evaluated changes in hazard ratios (HRs) for the association between tumor differentiation and survival based on tumor size. <b><i>Results:</i></b> In patients with poorly (Por) differentiated HCCs, the adjusted HRs of reduced overall survival (OS), recurrence-free survival (RFS), early RFS, and early extrahepatic RFS were 1.31 (95% confidence interval [CI]; 1.07–1.59), 1.07 (95% CI 0.89–1.28), 1.31 (95% CI 1.06–1.62), and 1.81 (95% CI 1.03–3.17), respectively. Moreover, based on an analysis of the effect modification of tumor differentiation according to tumor size, Por HCC was found to be associated with a reduced OS (<i>p</i> = 0.033). The HRs of Por HCCs sharply increased in patients with tumors measuring up to 5 cm. The adjusted HRs of reduced OS in patients with Por HCCs measuring &lt;2, ≥2 and &lt;5, and ≥5 cm were 1.22 (95% CI 0.69–2.14), 1.33 (95% CI 1.02–1.73), and 1.58 (95% CI 1.04–2.42), respectively. The corresponding adjusted HRs of reduced early RFS were 0.85 (95% CI 0.46–1.57), 1.34 (95% CI 1.01–1.8), and 1.57 (95% CI 1.03–2.39), respectively. The adjusted HRs of reduced early extrahepatic RFS were 1.89 (95% CI 0.83–4.3) in patients with tumors measuring ≥2 and &lt;5 cm and 2.33 (95% CI 0.98–5.54) in those with tumors measuring ≥5 cm. <b><i>Conclusions:</i></b> Por HCC measuring ≥2 cm was associated with early recurrence. Hence, it had negative effects on OS. After surgery, patients with Por HCC measuring ≥5 cm should be cautiously monitored for early extrahepatic recurrence. These findings will help physicians devise treatment strategies for patients with HCC.
DOI: 10.6084/m9.figshare.23566341.v1
title: TCGA DATA

description: <strong>RNA-sequencing expression (level 3) profiles and corresponding clinical information for several tumors were downloaded from the TCGA dataset (https://portal.gdc.com).</strong>
DOI: 10.6084/m9.figshare.28458614.v1
title: Innovation and Corporate Governance

description: This data is an extract from World Bank Enterprise Surveys. The data is used to study the relation between innovation and corporare governance.
DOI: 10.6084/m9.figshare.29135807.v1
title: data.zip

description: datasets used in our paper
DOI: 10.17632/tb4bcczff2
title: Data for: Patience predicts cooperative synergy: the roles of ingroup bias and reciprocity

description: Data in stata format and code (do-file)
DOI: 10.6084/m9.figshare.21693209.v1
title: Metagenome Databases

description: Unpublished metagenome databases
DOI: 10.6084/m9.figshare.27094618.v1
title: Supplementary Material for: Ketone Management in Pediatric Diabetes Centers in the United States: Current Practices and a call for Improved Standardization

description: Introduction: Diabetic ketoacidosis (DKA) is the leading cause of mortality among youth with type 1 diabetes (T1D). Guidelines for DKA prevention exist, however, specific guidance about when to check ketones and how to manage youth using insulin pumps and automated insulin delivery (AID) systems is lacking. 

Methods: A 35-item online survey exploring clinical ketone management practices for youth with T1D in the United States was distributed to diabetes healthcare professionals (HCPs). Survey responses, including multiple choice and Likert scale questions, were summarized and rates of agreement and disagreement (Likert scale 4,5 vs 1,2,3) are reported. 

Results: In total, 123 HCPs (51% physicians, 26% diabetes educators, 19% nurse practitioners) from 47 institutions completed the survey. Seventy percent worked at academic specialty centers. Ninety-seven percent reported &gt;50% CGM use in their clinic and 72% reported &gt;50% insulin pump use. Although 79% reported having ketone management protocols, the level and duration of hyperglycemia at which ketone monitoring was advised ranged from &gt;200-350 mg/dl and from 0 minutes to &gt;6 hours of duration. While 72% had distinct ketone management protocols for pump users, only 29% had specific protocols for AID. Sixty-two percent agreed that DKA due to infusion site failure was a significant problem in their practice and 70% agreed there was a need to standardize ketone management guidelines. 

Conclusions: The preventable nature and high incidence of DKA highlights the need to build consensus for clinical ketone management and to develop tools to facilitate management, especially as the use of diabetes technologies continues to increase.
DOI: 10.17632/ddvgdn7v7w
title: Australian HCP and seasonal influenza vaccination. Dec 2024

description: A cross-sectional survey was designed and distributed to a national Australian HCP sample, consisting of practicing nurses, midwives, pharmacists and medical practitioners. The self-administered, anonymous online survey measured key characteristics that predict vaccination behaviour and intention. Results: Most participants (n= 173) demonstrated habitual SIV behaviour (77.91%) that was associated with intention to vaccinate in the future. The archetype was supported by survey findings as key constructs were associated with vaccination intention, then behaviour. These constructs included heightened professional responsibility, vaccine confidence, and protection of self and patients. Furthermore, results suggested progressing vaccination intention to behaviour and overcoming vaccine complacency is possible through employee provision of free, accessible vaccination services.
DOI: 10.6084/m9.figshare.23593641.v1
title: Data from Molluscan genomes reveal extensive differences in photopigment evolution across the phylum

description: These data are from the analysis described in the manuscript "Molluscan genomes reveal extensive differences in photopigment evolution across the phylum", accepted at Molecular Biology and Evolution.https://doi.org/10.1093/molbev/msad263README.txt contains file details.Gene predictions for opsin and cryptochrome/photolyase proteins from 80 molluscan genome assemblies. BITACORA (version 1.3; Vizueta et al., 2022) was used for <i>de novo </i>gene prediction; using the “runBITACORA_genome_mode.sh” script to run in genome mode (i.e., no input genome annotation) using GeMoMa (parameter GEMOMA=T).Vizueta J, Sánchez-Gracia A, Rozas J. 2020. bitacora: A comprehensive tool for the identification and annotation of gene families in genome assemblies. <i>Mol. Ecol. Resour.</i> 20:1445–1452.
DOI: 10.6084/m9.figshare.26162269.v1
title: A global dataset of directional migration networks of migratory birds

description: Migratory birds are flying vertebrates that migrate back and forth seasonally. They link separate ecosystems through their unique flight and dispersal abilities. With the development of remote sensing tracking technologies, real-time monitoring surveys of bird migration have become possible. Herein, we systematically reviewed Chinese and English literature published between 1993 and 2023 to extract detailed geographic information on bird species, migration times, migration starting points, migration terminations, and migration pathways to build a global dataset of migration networks of birds. This dataset comprises 42,844 geo-referenced records at the provincial level, covering 112 bird species and their 1,454 migratory routes across 189 countries or regions, revealing the geographical distribution of different bird migration patterns, including intercontinental and intracontinental migration and the global distribution of bird migrations at the level of different families. These data help to further investigate the drivers of bird migration, changes in migration routes and their impacts on different ecosystems.
DOI: 10.6084/m9.figshare.28321649.v1
title: Mitogenome domestic pig.fas

description: This is fasta file of three sequence generated as part of manuscript entittled "<b>Multiple domestication centres of the Indian pig population</b>" . This file contained three newly generated sequence. <br>DP_2776-UK sequence belong to the Uttrakhand Domestic pig.DP_3108-CH seqeunce belong to the Chattisgarh Domestic pig. DP-Uttar Pradesh Barabanki sequence belong to the Uttar Pradesh Domestic pig
DOI: 10.17632/c3jhd93cww
title: An organ-chip model of sporadic ALS using iPSC-derived spinal cord motor neurons and an integrated blood brain-like barrier

description: Supplemental Tables for Lall et al. An organ-chip model of sporadic ALS using iPSC-derived spinal cord motor neurons and an integrated blood brain-like barrier.
DOI: 10.17632/pftv5xx26h
title: Parameter Estimation and Shading Pattern Identification for Photovoltaic Modules: Measured PV data

description: Contact information: Jieming Ma Xi'an Jiaotong-Liverpool University Suzhou, China. jieming84@gmail.com Dates of data collection: 2021/03 Geographic location: Xi’an Jiaotong-Liverpool University’s south campus (east longitude 120o75’, north latitude 31o28’) ------------------------------------------------------------------------------------------------------------ This directory contains the following datasets: ------------------------------ PV data (poly-crystalline XHYG-10W PV modules) Poly_1_1.mat Poly_1_2.mat Poly_1_3.mat Poly_2_1.mat Poly_2_2.mat Poly_2_3.mat Poly_3_1.mat Poly_3_2.mat Poly_3_3.mat Poly_4_1.mat Poly_4_2.mat Poly_4_3.mat ------------------------------ PV data ( mono-crystalline XKD-50W PV modules) Mono_1_4.mat Mono_1_5.mat Mono_1_6.mat Mono_2_4.mat Mono_2_5.mat Mono_2_6.mat Mono_3_4.mat Mono_3_5.mat Mono_3_6.mat Mono_4_4.mat Mono_4_5.mat Mono_4_6.mat --------------------------------------------------------------------- DOCUMENTATION FOR PV data In the experiments, we applied poly-crystalline XHYG-10W and mono-crystalline XKD-50W PV modules, whose technical parameters are listed as follows. PV module XHYG-10W XKD-50W Cell Technology Poly-Crystalline Mono-Crystalline Maximum Power 10 W 50W Voltage at Maximum Power Point 9V 17.82V Current at Maximum Power Point 1.12A 2.8A Open-circuit voltage 10.71V 22.02V Short-circuit current 1.23A 3.18A The number of cells 20 36 The experiments used four-series connected PV modules operating under both UICs and PSCs. The PV cellswere shaded by light films to simulate different PSCs. AYHT309 thermometer with Type-K thermocouple probes was installed to measure the temperature of the PV panels. The solar irradiance was measured by a standard 2 cm2 cm mono-crystalline PV cell which has been calibrated by the National Institute of Metrology, China. A Fluke F289C multimeter measured the cell’s short circuit current. A PROVA-1011 PV system analyzer has the capability of generating the I-V data under a specific environmental condition. In the dataset, there are 24 testing cases by using multiple-level numbering. The first item indicates the number of irradiance levels receiving by the applied PV string, while the second item represents the case number. For example, “4-2" means the second test case with four different irradiance levels. All the data were collected at the Xi’an Jiaotong-Liverpool University’s south campus (east longitude 120o75’, north latitude 31o28’) in March 2021. The column headings for the tabular data are defined as follows: I terminal current (A) V terminal voltage (V) T temperature (oC)
DOI: 10.6084/m9.figshare.23734047.v2
title: Problem set and raw data for Fig4b

description: Problem set and raw data for Fig4b
DOI: 10.6084/m9.figshare.24463531.v1
title: Significant age, sex, and smoking iQTLs

description: Significant trait (age, sex, smoking) iQTLs with FDR &lt; 0.25 in exam 1 and exam 5. Corresponding to Figure 4A from the Kasela et al. manuscript entitled "Interaction molecular QTL mapping discovers cellular and environmental modifiers of genetic regulatory effects" (including also iQTLs with uncertain direction of effect)
DOI: 10.6084/m9.figshare.9938375.v1
title: Salonen_ea-ML_fossil_pollen-Supplementary_Data.xlsx

description: Data supplement related to the paper "Machine-learning based reconstructions of primary and secondary climate variables from North American and European fossil pollen data", submitted to Scientific Reports by Sakari Salonen et al.<br><br>This file contains the North American and European pollen-climate calibration datasets used in the paper. For further information, see the "Info" sheet of the Excel file.<br>
DOI: 10.17632/8gj3rzvy87
title: correlation between multiple intelligences and academic performance

description: The relationship between multiple intelligences and academic performance looks at how Howard Gardner's theory of multiple intelligences, which identifies various types of intelligence, affects students' success in academic settings. Gardner proposed that intelligence is not a single entity but consists of various dimensions, including linguistic, logical-mathematical, spatial, musical, bodily kinesthetic, interpersonal, intrapersonal, and naturalistic intelligence. Each student may excel in one or more of these intelligences, which influences how they learn and perform in school.
DOI: 10.17632/m9kwyp7y22
title: Tape strips detect molecular alterations and cutaneous biomarkers in skin of patients with hidradenitis suppurativa

description: Supplementary data to article "Tape strips detect molecular alterations and cutaneous biomarkers in skin of patients with hidradenitis suppurativa"
DOI: 10.17632/pr33srfts9
title: OE&CD

description: OE&CD Survey Data
DOI: 10.6084/m9.figshare.23284364.v1
title: Liu dataset : scATAC + scRNA tables preprocessed (paired)

description: Folder containing both scATAC-seq accessibility matrice and scRNA-seq count matrice for the dataset
DOI: 10.6084/m9.figshare.24037167.v1
title: Source_data.rar

description: Raw data for paper "Generation of Oxide Surface Patches Promoting H-spillover in Ru/(TiO<sub>x</sub>)MnO Catalysts Enables CO<sub>2</sub> reduction to CO" which was published on Nature Catalysis.
DOI: 10.6084/m9.figshare.25116959.v2
title: Supplementary Material for: Respiratory Syncytial Virus Maternal Vaccination in Infants below 6 Months of Age: Meta-Analysis of Safety, Immunogenicity, and Efficacy

description: <b><i>Introduction:</i></b> Severe respiratory syncytial virus (RSV) disease is most prevalent during infancy, particularly in those born prematurely, who benefit least from maternal antibody transfers. Maternal immunization is an attractive prevention leading to vaccine clinical trials. This meta-analysis aimed to evaluate recent maternal RSV vaccine trials. <b><i>Methods:</i></b> Following PRISMA-P guidelines for systematic reviews and registered at https://www.crd.york.ac.uk/prospero, this study shortlisted six randomized clinical trials of suitable quality from four databases. Meta-analysis evaluated vaccine safety, immunogenicity, and efficacy in infants and their mothers. <b><i>Results:</i></b> From random-effects and fixed-effects meta-analysis between trial and control arms, the maternal post-vaccination geometric antibody (Ab) titers showed pooled standard mean differences (SMDs [95% CI]) at delivery of (4.14 [2.91–5.37]), (3.95 [2.79–5.11]), and (12.20 [7.76, 16.64]) for RSV neutralizing Ab A, B, and F IgG, respectively. Vaccine administration was more likely than placebo to cause local pain, erythema, swelling, and systemic myalgia. Furthermore, the Ab levels in infants at birth showed pooled SMDs of each RSV A (3.9 [2.81–4.99]), RSV B (1.86 [1.09–2.62]), and RSV F IgG (2.24 [1.24–3.23]). The overall reduction of RSV-related lower respiratory tract infections and hospitalizations in the first 6 months of life was 52% and 48%, respectively. <b><i>Conclusions:</i></b> Not only does antenatal RSV vaccination look safe and immunogenic in vaccinated mothers, but it also reliably provides effective antibody levels in infants and diminishes RSV-related severe disease in infants under 6 months of age.
DOI: 10.6084/m9.figshare.28847951.v1
title: Results

description: <b>Single-cell sequencing analysis data of the left ventricle from mice in the chronic stress group and the control group, including differential expression, cell type annotation, pseudotime analysis, CellPhoneDB, and pySCENIC analysis results.</b>
DOI: 10.6084/m9.figshare.4700272.v1
title: Dynamic Light Scattering Data

description: Code and description relevant to files can be found on https://github.com/dad/pab1-phase-2017/blob/master/src/biophysics/DLS.np
DOI: 10.17632/h4sgw46mxw
title: Data for: Trends and age-period-cohort analysis of upper aerodigestive tract and stomach cancer mortality in Lithuania, 1987-2016

description: Table A. Age-specific UADT cancer deaths and the corresponding population, birth cohort and year of survey in the period 1987-2016 in Lithuania. Men
DOI: 10.17632/pdj8dm7p26
title: Prognosis of Merkel cell carcinoma patients with autoimmune disorders, other types of immune dysfunction, or immunocompetent status: analysis of 762 patients

description: Supplemental figures and tables of manuscript Prognosis of Merkel cell carcinoma patients with autoimmune disorders, other types of immune dysfunction, or immunocompetent status: analysis of 762 patients