cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25381/cput.22261720
title: Prediction of biological wastewater treatment performance using artificial neural networks

description: Ethical Clearance Reference Number: 2021FEBEREC-STD- 065 <br> Pre-processing data from published and unpublished previous studies treating biodiesel-, textile-, polymer-, and pulp and paper wastewater using an ABR and EGSB for artificial neural network (ANN) model simulation and developnent. <br> For ANN problems to be solved, the selection of a suitable learning rate, momentum, the number of neurons from each of the hidden layers and the activation function is crucial. Therefore, the collected data must be prepared in a Microsoft Excel spreadsheet format with input and output columns. A training file is then created with samples of the whole problem domain to select the required parameters. Three data sets are used: a training data set, test data set and validation data set. When the training process takes place, the neural network will be tested against the testing data to determine accuracy, and training will be stopped when the mean average error remains the same for a period of time.
DOI: 10.34740/kaggle/dsv/5163903
title: YouTube Daily
DOI: 10.6084/m9.figshare.21656726
title: Supplementary Material for: Prediction of Golgi Polarity in Collectively Migrating Epithelial Cells Using Graph Neural Network

description: In the stationary epithelium, the Golgi apparatus assumes an apical position, above the cell nucleus. However, during wound healing and morphogenesis, as the epithelial cells starts migrating, it relocalizes closer to the basal plane. On this plane, the position of Golgi with respect to the cell nucleus defines the organizational polarity of a migrating epithelial cell, which is crucial for an efficient collective migration. Yet, factors influencing the Golgi polarity remain elusive. Here we constructed a graph neural network-based deep learning model to systematically analyze the dependency of Golgi polarity on multiple geometric and physical factors. In spite of the complexity of a migrating epithelial monolayer, our simple model was able to predict the Golgi polarity with 75% accuracy. Moreover, the model predicted that Golgi polarity predominantly correlates with the orientation of maximum principal stress. Finally, we found that this correlation operates locally since progressive coarsening of the stress field over multiple cell-lengths reduced the stress polarity-Golgi polarity correlation as well as the predictive accuracy of the neural network model. Taken together, our results demonstrated that graph neural networks could be a powerful tool towards understanding how different physical factors influence collective cell migration. They also highlighted a previously unknown role of physical cues in defining the intracellular organization.
DOI: 10.5281/zenodo.7732524
title: EFFECT THRESHOLDS FOR AQUATIC ORGANISMS, Fish

description: EFFECT THRESHOLDS FOR AQUATIC ORGANISMS, Fish
DOI: 10.5281/zenodo.7732523
title: EFFECT THRESHOLDS FOR AQUATIC ORGANISMS, Fish

description: EFFECT THRESHOLDS FOR AQUATIC ORGANISMS, Fish
DOI: 10.23708/rn7rws
title: Coastal Vulnerability: Perception survey in Anlo Beach (Ghana), 2021

description: The vulnerability of coastal territories has multiple dimensions, making it difficult to assess. One way of collecting data about the vulnerability of coastal areas is to interview people living on the coast. These communities have information on the coastal phenomena that occur on their territory and on the evolution over time of the frequency, intensity, and speed of progression of the pressures and pulses affecting them. They are the first observers of these phenomena. They are also the ones who suffer the consequences first, and who are most able to provide information on the impacts of coastal hazards on their territory. People living on the coast are also actors in their territory, where they carry out activities and development practices. Coastal communities, which are the focus of our survey, can therefore play four roles in the vulnerability of coastal socio-ecosystems: observers, impacted victims, agents of degradation, and agents of remediation. The consideration of these four roles is the basis for designing the current survey. The questionnaire is designed to be administered in several areas of the West African coastline. It is simple, accessible, and portable. In addition, it covers the major hazards, which are salinization, coastal erosion, flooding, plastic pollution, and oil pollution for cases in Senegal and Ghana. The second dimension that structured the questionnaire is an in-depth description of these major hazards. Thus, the questionnaire is designed as an appropriate tool for vulnerability assessment. A pilot survey was conducted in the Anlo Beach community in the Western Region of Ghana to obtain information on risk perceptions. The survey targeted a sample of 156 respondents, with each respondent being an adult member (generally husband or wife) of a given household. To get the sample of households, a systematic sampling of every 5th household within the list of 740 enumerated households was carried out to ensure that the results that will be obtained from our survey will approximate what would have been obtained if the entire population had been surveyed. The interviews were conducted face-to-face in September and October 2021. Kobocollect software, installed on mobile phones, was used to conduct the interview. In most cases, responses provided to the questionnaire were used directly as binary or multi-modal variables.
DOI: 10.5522/04/22236649
title: Sokuluk archaeological site in Chuy valley, Kyrgyz Republic / Городище Сокулук [CAAL_ID: Mon_KG_MC-001852]

description: Sokuluk site (Сокулук; Городище Сокулук) is one of the best-known medieval monuments of Chuy Valley in Kyrgyz Republic (Kyrgyzstan). It is located around 12 km to the west from the capital city Bishkek. The period of occupation of the Sokuluk site is believed to be 7th-8th century – early 13th century CE. Archaeological finds from the site are presented in the National Museum of History of Kyrgyz Republic, and 1941 findings from the site were used by A. N. Bernshtam to establish an archaeological periodisation of settled medieval culture of the region. Coordinates: Decimal degrees: Latitude: 42.87067 Longitude: 74.28017 (CAAL_ID: Mon_KG_MC-001852). Aerial photographs and derivatives presented here were collected in 2020 as part of the UCL’s Central Asian Archaeological Landscape project (UCL CAAL) to create a baseline record for archaeological monuments of the region. The work is done by CAAL project researchers, and data is processed and presented by Gai Jorayev who is also a point of contact for data related enquiries. The dataset here includes: - 5 photographs of the site from October 2020; - 417 aerial photographs uploaded as one Zip archive; - Digital orhtomosaic (Ground Sampling Distance is 2.36 cm/pixel) and Digital Elevation Model (DEM) (Ground Sampling Distance is 9.42 cm/pixel) in TIFF format to be viewed and analysed in GIS (Geographic Information Systems) software; these are also presented as one PDF file for preview; - Processing report in PDF format that details the parameters of generating the DEM and Orhtomosaic here;
DOI: 10.5522/04/22236649.v1
title: Sokuluk archaeological site in Chuy valley, Kyrgyz Republic / Городище Сокулук [CAAL_ID: Mon_KG_MC-001852]

description: Sokuluk site (Сокулук; Городище Сокулук) is one of the best-known medieval monuments of Chuy Valley in Kyrgyz Republic (Kyrgyzstan). It is located around 12 km to the west from the capital city Bishkek. The period of occupation of the Sokuluk site is believed to be 7th-8th century – early 13th century CE. Archaeological finds from the site are presented in the National Museum of History of Kyrgyz Republic, and 1941 findings from the site were used by A. N. Bernshtam to establish an archaeological periodisation of settled medieval culture of the region. Coordinates: Decimal degrees: Latitude: 42.87067 Longitude: 74.28017 (CAAL_ID: Mon_KG_MC-001852). Aerial photographs and derivatives presented here were collected in 2020 as part of the UCL’s Central Asian Archaeological Landscape project (UCL CAAL) to create a baseline record for archaeological monuments of the region. The work is done by CAAL project researchers, and data is processed and presented by Gai Jorayev who is also a point of contact for data related enquiries. The dataset here includes: - 5 photographs of the site from October 2020; - 417 aerial photographs uploaded as one Zip archive; - Digital orhtomosaic (Ground Sampling Distance is 2.36 cm/pixel) and Digital Elevation Model (DEM) (Ground Sampling Distance is 9.42 cm/pixel) in TIFF format to be viewed and analysed in GIS (Geographic Information Systems) software; these are also presented as one PDF file for preview; - Processing report in PDF format that details the parameters of generating the DEM and Orhtomosaic here;
DOI: 10.6084/m9.figshare.17143370
title: Trained FIL model

description: The FIL model was trained on all 15 training subjects (fil15) from the MICCAI Challenge dataset, using a minimally informative, but proper Wishart prior, with <i>v</i><sub>0</sub>=1.0. An augmentation search radius of 3 voxels was used with a Gaussian weighting standard deviation of 2.0 voxels. Patch sizes were 4x4x4 voxels, and four outer iterations were used for model training. Up to <i>K</i>=24 basis functions were available to encode each patch. This file is the result.<br>A second model was trained on all 30 subjects (fil30) from the MICCAI Challenge dataset (35 scans, with repeat scans given a weighting of 0.5). Augmentation search radius was 2 voxels, with a Gaussian weighting standard deviation of 1.5 voxels. Other parameters remained the same as for fil15.<br>
DOI: 10.6084/m9.figshare.17143370.v3
title: Trained FIL model

description: The FIL model was trained on all 15 training subjects (fil15) from the MICCAI Challenge dataset, using a minimally informative, but proper Wishart prior, with <i>v</i><sub>0</sub>=1.0. An augmentation search radius of 3 voxels was used with a Gaussian weighting standard deviation of 2.0 voxels. Patch sizes were 4x4x4 voxels, and four outer iterations were used for model training. Up to <i>K</i>=24 basis functions were available to encode each patch. This file is the result.<br>A second model was trained on all 30 subjects (fil30) from the MICCAI Challenge dataset (35 scans, with repeat scans given a weighting of 0.5). Augmentation search radius was 2 voxels, with a Gaussian weighting standard deviation of 1.5 voxels. Other parameters remained the same as for fil15.<br>
DOI: 10.6084/m9.figshare.17143370.v2
title: Trained FIL model

description: The FIL model was trained on all 15 training subjects (fil15) from the MICCAI Challenge dataset, using a minimally informative, but proper Wishart prior, with <i>v</i><sub>0</sub>=1.0. An augmentation search radius of 3 voxels was used with a Gaussian weighting standard deviation of 2.0 voxels. Patch sizes were 4x4x4 voxels, and four outer iterations were used for model training. Up to <i>K</i>=24 basis functions were available to encode each patch. This file is the result.<br>A second model was trained on all 30 subjects (fil30) from the MICCAI Challenge dataset (35 scans, with repeat scans given a weighting of 0.5). Augmentation search radius was 2 voxels, with a Gaussian weighting standard deviation of 1.5 voxels. Other parameters remained the same as for fil15.<br>
DOI: 10.5285/908bb17f-467c-42bf-ae00-f03bb0feea23
title: BEDMAP1 - Ice thickness, bed and surface elevation for Antarctica - gridding products

description: We present here BEDMAP1 (2000-2001), a suite of gridded products describing surface elevation, ice-thickness and the sea floor and subglacial bed elevation of the Antarctic south of 60deg S. The suite includes grids representing: - ice-sheet thickness over the ice sheet and shelves, - bed elevation beneath the grounded ice sheet, - bathymetry to 60 degrees South including the areas beneath the ice shelves. These grids are consistent with a high-resolution surface elevation model of Antarctica. While the digital models have a nominal spatial resolution of 5 km, such high resolution is not strictly justified by the original data density over all parts of the ice sheet. The suite does however provide an unparalleled vision of the geosphere beneath the ice sheet and a more reliable basis for ice sheet modelling. The bed elevation DEM, which includes the entire geosphere south of 60 degrees South, provides an improved delineation of the boundary between East and West Antarctica and sheds new light on the morphology of the contiguous East Antarctic landmass, much of which is buried below an average of 2500 m of ice.
description: The primary source data consist of survey point measurements of ice thickness, bed elevation and surface elevation, which principally comes from airborne radar surveys and seismic soundings, and to a smaller extent from ground-based radar surveys.
DOI: 10.5281/zenodo.4661926
title: A copy of website at https://www.naenamarray2020.info

description: This is the full copy of the website 'https://www.naenamarray2020.info'.
DOI: 10.5281/zenodo.4970556
title: A copy of website at https://www.naenamarray2020.info

description: This is the full copy of the website 'https://www.naenamarray2020.info'.
DOI: 10.5281/zenodo.7732708
title: A copy of website at https://www.naenamarray2020.info

description: This is the full copy of the website 'https://www.naenamarray2020.info'
DOI: 10.20351/29gd20230220
title: BITER-2 Cruise, RV García del Cid

description: Oceanographic data acquired during the BITER-2 Cruise (29GD20230220) on board the Research Vessel García del Cid in 2023.
DOI: 10.6084/m9.figshare.21780974
title: Supplementary Material for: Efficacy and incidence of treatment related adverse events of thrombopoietin receptor agonists in adults with immune thrombocytopenia: a systematic review and network meta-analysis of randomized controlled study

description: Introduction: To conduct a network meta-analysis to assess the efficacy and incidence of treatment related adverse events (TRAEs) of eltrombopag, romiplostim, avatrombopag, recombinant human thrombopoietin (rhTPO) and hetrombopag for adult immune thrombocytopenia (ITP). Methods: Randomized controlled trails (RCTs) of the five therapies from inception to June 1, 2022 were included. The efficacy outcome was the rate of platelet response, defined as the achievement of platelet counts above 50 x 109/L. Pairwise odds ratios (ORs) and 95% confidence intervals (CIs) were caculated. The surface under the cumulative ranking (SUCRA) was used to rank the included therapies for each outcome. Results: In total, 1,360 participants were analyzed in 14 eligible RCTs. All of the therapies showed a significantly better platelet response than the placebo, and avatrombopag (OR, 7.42; 95% CI, 1.74–31.69) and rhTPO (OR, 3.86; 95%CI, 1.62–9.18) were better than eltrombopag. Regarding TRAEs, no significant differences were found between patients receiving eltrombopag, romiplostim, and avatrombopag. Avatrombopag carried the highest platelet response rate with SUCRA value of 87.5, and carried the least TRAEs risk with SUCRA value of 37.0. Conclusions: These findings indicated that avatrombopag appeared to be the optimal choice as the second-line therapy of adult ITP.
DOI: 10.5281/zenodo.7732576
title: Deep Sea Explorers open classification data

description: This is a reduced, anonymised dataset containing the classifications made in the Deep Sea Explorers demonstrator project available on Zooniverse during the implementation period - from the 19th of October, 2021, to the 23rd of October, 2023 - as part of the REINFORCE project.
DOI: 10.5281/zenodo.7732577
title: Deep Sea Explorers open classification data

description: This is a reduced, anonymised dataset containing the classifications made in the Deep Sea Explorers demonstrator project available on Zooniverse during the implementation period - from the 19th of October, 2021, to the 23rd of October, 2023 - as part of the REINFORCE project.
DOI: 10.5519/qd.mmbg6v98
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1001 records)
DOI: 10.5281/zenodo.7732755
title: Ecotoxicological threshold values water organisms, higher plants

description: Ecotoxicological threshold values water organisms, higher plants
DOI: 10.5281/zenodo.7732754
title: Ecotoxicological threshold values water organisms, higher plants

description: Ecotoxicological threshold values water organisms, higher plants
DOI: 10.15489/z0g96v5kwg14
title: Tree Canopy Cover Loss Monthly - Landsat-8/Sentinel-2 - Germany, 2018-2021

description: The product shows tree canopy cover loss in Germany between January 2018 and April 2021 at monthly temporal and 10 m spatial resolution. The basic principle behind this map is to compute monthly composites of the disturbance index (DI, Healey et al. 2005), a spectral index sensitive to forest disturbance, from all available Sentinel-2 and Landsat-8 data with less than 80 % cloud cover. These monthly composites are then compared to a median composite of the DI for 2017, which serves as a reference. After applying a threshold to the difference image, the time series of detected losses is checked for consistency. Only losses recorded continuously in all observations of a pixel until the end of the time series are considered. The dataset does not differentiate between the drivers of the losses. It depicts areas of natural disturbances (windthrow, fire, droughts, insect infestation) as well as sanitation and salvage logging, and regular forest harvest. The full description of the method and results can be found in Thonfeld et al. (2022).
DOI: 10.5281/zenodo.7708732
title: Data and script for: "Chronic and immediate refined carbohydrate consumption measured by glycemic load, and facial attractiveness"

description: Data and script for statistical analyses. Script: script.Rmd Data: - data_attractiveness_juge_results.csv (for GLMM) - data_subjects.csv (for path analysis)
DOI: 10.5281/zenodo.7708731
title: Data and script for: "Chronic and immediate refined carbohydrate consumption measured by glycemic load, and facial attractiveness"

description: Data and script for statistical analyses. Script: script.Rmd Data: - data_attractiveness_juge_results.csv (for GLMM) - data_subjects.csv (for path analysis)
DOI: 10.35081/0dm0-bj28
title: COVID-19-Is-a-Confounder-of-Increased-Candida-Airway-Colonisation
DOI: 10.5281/zenodo.7732803
title: Ecotoxicological threshold values mammals

description: Ecotoxicological threshold values mammals
DOI: 10.5281/zenodo.7732802
title: Ecotoxicological threshold values mammals

description: Ecotoxicological threshold values mammals
DOI: 10.5281/zenodo.4498439
title: Mock visibilities from ALMA logo cube in npz format

description: In NPZ format to avoid introducing CASA dependency for MPoL testing.
DOI: 10.5281/zenodo.4708423
title: Mock datasets for MPoL tutorials and tests

description: `*.npz` files containing visibilities are in the TMS format (visread's `CASAconvention=False`).
DOI: 10.5281/zenodo.4498438
title: Mock datasets for MPoL tutorials and tests

description: `*.npz` and `*.asdf` files containing visibilities are in the TMS format (opposite that of CASA). logo_cube.noise.npz visibilities have been rescaled such that data - model / sigma follows the expected Gaussian envelope. HD 143006 continuum visibilities have flagged outliers removed and weights rescaled such that the data - model / sigma follows the expected Gaussian envelope, for each spectral window. AS 209 continuum visibilities have been averaged across frequency and have their weights rescaled such that the data - model / sigma follows the expected Gaussian envelope, for each spectral window.
DOI: 10.5281/zenodo.4711811
title: Mock datasets for MPoL tutorials and tests

description: `*.npz` files containing visibilities are in the TMS format (visread's `CASAconvention=False`).
DOI: 10.5281/zenodo.4904794
title: Mock datasets for MPoL tutorials and tests

description: `*.npz` files containing visibilities are in the TMS format (opposite that of CASA). HD 143006 continuum visibilities have flagged outliers removed and weights rescaled such that the data - model / sigma follows the expected Gaussian envelope, for each spectral window.
DOI: 10.5281/zenodo.4930016
title: Mock datasets for MPoL tutorials and tests

description: `*.npz` files containing visibilities are in the TMS format (opposite that of CASA). logo_cube.noise.npz visibilities have been rescaled such that data - model / sigma follows the expected Gaussian envelope. HD 143006 continuum visibilities have flagged outliers removed and weights rescaled such that the data - model / sigma follows the expected Gaussian envelope, for each spectral window.
DOI: 10.5281/zenodo.7732834
title: Mock datasets for MPoL tutorials and tests

description: `*.npz` and `*.asdf` files containing visibilities are in the TMS format (opposite that of CASA). logo_cube.noise.npz visibilities have been rescaled such that data - model / sigma follows the expected Gaussian envelope. HD 143006 continuum visibilities have flagged outliers removed and weights rescaled such that the data - model / sigma follows the expected Gaussian envelope, for each spectral window. AS 209 continuum visibilities have been averaged across frequency and have their weights rescaled such that the data - model / sigma follows the expected Gaussian envelope, for each spectral window.
DOI: 10.5281/zenodo.7732733
title: VCF file from: Signatures of local adaptation to current and future climate in phenology-related genes in natural populations of Quercus robur

description: Qrob_seqcap_87_18799.vcf - containing 18,799 single nucleotide variants (SNPs) in phenology-related genes in 87 individuals of Quercus robur from 6 populations, described in Meger et al.
DOI: 10.5281/zenodo.7732732
title: VCF file from: Signatures of local adaptation to current and future climate in phenology-related genes in natural populations of Quercus robur

description: Qrob_seqcap_87_18799.vcf - containing 18,799 single nucleotide variants (SNPs) in phenology-related genes in 87 individuals of Quercus robur from 6 populations, described in Meger et al.
DOI: 10.5281/zenodo.7732861
title: Table_A2-5-6_Ecotoxicological threshold values birds

description: Ecotoxicological threshold values birds
DOI: 10.5281/zenodo.7732860
title: Table_A2-5-6_Ecotoxicological threshold values birds

description: Ecotoxicological threshold values birds
DOI: 10.5281/zenodo.7732886
title: Gokyo Lake 4 temperature and pressure records

description: Temperature and pressure time series collected in Gokyo Lake 4, in Sagarmatha, Nepal, between June 6, 2018 and September 1, 2019. A taut-line mooring held 9 HOBO temperature loggers bounded by 2 pressure sensors at the top and bottom of the mooring. Matlab files hold each dataset (pressure, temperature) separately. dt variable is Matlab date time, and sensor depths are in centimeters above bottom.
DOI: 10.5281/zenodo.7732885
title: Gokyo Lake 4 temperature and pressure records

description: Temperature and pressure time series collected in Gokyo Lake 4, in Sagarmatha, Nepal, between June 6, 2018 and September 1, 2019. A taut-line mooring held 9 HOBO temperature loggers bounded by 2 pressure sensors at the top and bottom of the mooring. Matlab files hold each dataset (pressure, temperature) separately. dt variable is Matlab date time, and sensor depths are in centimeters above bottom.