cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.35092/yhjc.12459407.v1
title: Dataset from Mouse 7 for Sit & Goard: Distributed and Retinotopically Asymmetric Processing of Coherent Motion in Mouse Visual Cortex

description: Accompanying dataset for Sit KK, Goard MJ. Distributed and Retinotopically Asymmetric Processing of Coherent Motion in Mouse Visual Cortex.<br><br>This dataset contains the data for mouse 7 / 10<br>Mouse SKKS048<br><br>See all data in collection here: https://doi.org/10.35092/yhjc.c.5018363<br>These datasets contain calcium imaging data taken from L2/3 of the primary visual cortex in mice. Mice were head fixed and passively watching a random dot kinematogram stimulus. The stimulus data vector for processing these data are also included. The accompanying code to analyze these data can be found at: https://github.com/kevinksit/CoherentMotionProject<br>Data are either in preprocessed DFF matrices, which represent the change in neural activity compared to a baseline or raw images from the microscope. All data are processed with MATLAB 2018b.<br>The purpose of these data is to understand the organization of neural activity in response to coherent motion in the murine visual cortex.<br>The manuscript associated with these data is Sit KK, Goard MJ. Distributed and Retinotopically Asymmetric Processing of Coherent Motion in Mouse Visual Cortex.<br>ABSTRACTPerception of visual motion is important for a range of ethological behaviors in mammals. In primates, specific visual cortical regions are specialized for processing of coherent visual motion. However, whether mouse visual cortex has a similar organization remains unclear, despite powerful genetic tools available for measuring population neural activity. Here, we use widefield and 2-photon calcium imaging of transgenic mice to measure mesoscale and cellular responses to coherent motion. Imaging of primary visual cortex (V1) and higher visual areas (HVAs) during presentation of natural movies and random dot kinematograms (RDKs) reveals varied responsiveness to coherent motion, with stronger responses in dorsal stream areas compared to ventral stream areas. Moreover, there is considerable anisotropy within visual areas, such that neurons representing the lower visual field are more responsive to coherent motion. These results indicate that processing of visual motion in mouse cortex is distributed heterogeneously both across and within visual areas.
DOI: 10.3535/f1j-m4k-15y
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kfj-amq-9wq
title: Gymnograptus linnarssoni (Moberg, 1896)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.6854951.v1
title: Boyce et al. 2018 Tables S1-S17.xlsx

description: Supplemental tables for "Discovery of psychoactive plant and mushroom alkaloids in ancient fungal cicada pathogens."
DOI: 10.3535/10h-lp5-dnr
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/eav-ewa-wcw
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/053-sgs-djc
title: Paraclimacograptus estonus (Schmidt, 1858)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jaf-pwh-cld
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/vj24br7gnt
title: Major and trace elements in sediments and soils of the Zerafshon area, north - west Tajikistan

description: The data set contains 8816 numerical values regarding the content of 9 major elements as oxides: SiO2, TiO2, Al2O3, FeO, MnO2, MgO, CaO, K2O, and Na2O  (in %) and 29 trace elements:  Sc, V, Cr, Co, Ni, Zn, As, Br, Rb, Sr, Zr, Sb, Cs, Ba, La, Ce, Nd, Sm, Eu, Gd, Tb, Tm, Yb, Hf, Ta, W, Hg, Th, and U (in mg/kg) as determined by Epithermal Neutron Activation Analysis in 116 samples of sediments and soils, corresponding to 116 different sampling points at an altitude between 883 and 3629 m, all along the Tajik cectoer of Zarafshon river and its tributaries.
DOI: 10.3535/77g-zx3-4bp
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vsh-lne-a8c
title: Gymnograptus linnarssoni (Moberg, 1896)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dx8-fkb-waq
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sga-dax-h6p
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/33s-f8l-6x9
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cea-yq0-760
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jvn-m4w-bgl
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/maq-lcs-t8j
title: Pachystroma Müll.Arg.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/5kyzpxmzd4
title: Teacher Retention Greece

description: This dataset contains variables such as the region of the school, teacher number, student number, mental resilience, and teacher intention to remain in the school.
DOI: 10.17632/br38t938c2
title: Code for Data-set investigation of a Gas Turbine for Electricity Generation

description: This contains the R markdown code used to perform the filtering and descriptive analysis on the raw turbine dataset found in http://dx.doi.org/10.17632/6w3vy3ybhg.2
DOI: 10.17632/ddrn6hpkdj
title: Dataset produced by automated sandrammer, clay-gun, and plate viscometer for three different tap-hole clays

description: In pyrometallurgical furnace operation, tap-hole clay is injected using a clay-gun into the tap-hole at the end of the tap to stop the metal and/or the slag flow, and to create a seal between the furnace contents and the environment. Commercial manufacturers of tap-hole clay report the workability index of their products, based on sand-rammer technology, as an indication of the rheological properties of the clay. In the paper presented here, a dataset is presented for three different tap-hole clays where an automated sand-rammer, pilot-scale clay-gun, and plate viscometer were applied. In all three instances, the data collection process was automated with raw data, available as Excel spreadsheets, published in an online repository. For the purpose of this paper, the data was analysed and presented as graphs or in tables. The data will be of future use for further studies into the effect of tap-hole clay rheology on clay-gun performance.
DOI: 10.3535/5az-tt9-fba
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8kd-ptl-pv9
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28190396.v1
title: Coding Results of the Cognitive Upgrading Experiences

description: We use Epistemic Network Analysis (ENA), a cognitive modeling technique to compare cognitive networks of student groups with a range of genders, educational backgrounds, and discipline directions. Within the coding results, elements that are mentioned in a section is labeled as “1”, while the code for elements that are not mentioned is “0”.
DOI: 10.3535/949-grh-m9b
title: Gymnograptus linnarssoni (Moberg, 1896)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q2a-054-2t3
title: Pachystroma Müll.Arg.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/leq-f8x-db5
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mk8-hjq-d8n
title: Pachystroma Müll.Arg.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5h5-k5p-yj4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5y4-ky4-g3d
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ksv-nzj-r0q
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tmp-vz3-r19
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/jjz3xmrv3p
title: DME production and utilization data in Trinidad n Tobago 

description: The main objectives were to determine if a 15% allotment of M5 methanol plant’s annual production capacity would be sufficient to produce the total amount of DME required to achieve a 20 wt% blend of all major (household and transportation) fuels, namely LPG, diesel and gasoline in Trinidad annually, to determine an appropriate catalyst for DME production, to design and cost a DME reactor and to assess LPG-DME blends for use as a household fuel. Since there are no DME production plants currently in Trinidad, it was suggested that a DME unit be incorporated into the processing scheme of an existing methanol plant which would utilize a pure methanol feed to produce DME via methanol dehydration. Firstly, the total DME required for blending was calculated to be 149,600 MT/y using the annual consumption for each major fuel. Using 15% of M5’s annual production capacity, which corresponded to 300,000 MT/y of methanol, 194,045 MT/y of DME was able to be produced which met and surpassed the required 149,600 MT/y. A γ-Al2O3 catalyst which had a DME selectivity and methanol conversion of 99.97 and 90.07% respectively was utilized. Two catalysts were considered for use, namely HZSM-5 and γ-Al2O3, however γ-Al2O3 was ultimately chosen as it had less associated drawbacks, was more economically feasible and more optimized for the operating conditions of a gas phase reaction at 573K and 17bar. A multitubular fixed bed reactor which utilized boiling water cooling to maintain an isothermal operation was chosen as it was most suited to the process conditions, catalyst chosen and allowed for acute temperature control. The volume, length and diameter of the reactor were found to be 10.6m3, 7.32m and 1.916m respectively. The reactor contained 3254 tubes and required 6834 kg of catalyst. The reactor bare module, operating and catalyst costs were found to be USD $233,172, $33,772 and $106,615 respectively. The reactor duty was 11.168 GJ/h necessitating a cooling water flow rate of 7951.37 kg/h. The annual production cost of DME was estimated to be $58,213,500. A 20% DME-LPG blend was deemed most optimum for household fuel usage as it offers the most reduction in harmful CO and NOx emissions while sacrificing minimal calorific value and thermal efficiency. Additionally, a 20% blend is the maximum allowable concentration that does not require modifications to existing hardware or infrastructure thereby minimizing cost to the end user. One recommendation for future studies would be to utilize a pilot scale reactor to experimentally determine the rate constant as well as confirm the product composition flow rates since real world kinetics can differ from theoretical calculations. Different blend data are presented here.
DOI: 10.3535/ag1-jc1-0h6
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nhg-dw4-yef
title: Paraclimacograptus estonus (Schmidt, 1858)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25661178.v1
title: Data for "Measuring maximum heart rate to study cardiac thermal performance and heat tolerance in fishes"

description: Compiled data for "Measuring maximum heart rate to study cardiac thermal performance and heat tolerance in fishes"
DOI: 10.17608/k6.auckland.21193687.v1
title: Raw Data: Study 2 MASE

description: Data used in study 2 of MASE development and validation.
DOI: 10.3535/bhq-z6b-d68
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gvf-59n-yg3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/91s-c8p-h54
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/byv-2gv-hhl
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wtw-810-ynp
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28498781.v1
title: Mapping-based viral consensus sequences derived from metatranscriptomic sequencing of nasopharyngeal swabs

description: 196 reconstructed viral genomes of variable coverage. The viral sequences were derived by mapping de-hosted reads to reference viral genomes and computing consensus sequences.
DOI: 10.3535/hsa-7za-4av
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ya1-z84-bta
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5qf-tyq-4c8
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fz9-40g-s9r
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19729708.v2
title: S3_GDELT BigQuery

description: GDELT query used to retrieve data from Google BigQuery
DOI: 10.3535/a9d-d2l-lzd
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/r3d7sv9v4m
title: Decision-making for thrips control in soybean fields using precision agriculture principles

description: The data used in this study were collected from four commercial soybean fields cultivated over two years (2017–2018 and 2018–2019 harvests) in the state of Tocantins, Brazil. These fields are in the savannah-like cerrado biome, which exhibits significant area under soybean cultivation under a tropical climate with rainy summers and dry winters. The density of thrips was evaluated by beating the plants and keeping a white plastic tray underneath to count the insects. This technique is suitable for estimating thrips density in soybean (Santos et al. 2021). In field A, thrips densities were estimated when the plants reached the soybean phenological stages V5 (fifth trifoliate), R2 (full flowering), R5 (beginning seed), and R6 (full seed). In field B, the densities were assessed when the plants reached the stages V4 (fourth trifoliate), V5, R2, R5, and R6. In field C, the densities were estimated when the plants were in stages V4, V5, R2, R3 (beginning pod), R5, and R6. Finally, in field D, densities were assessed when the plants reached the stages V4, V5, R2, R3, R4 (full pod), R5, and R6.
DOI: 10.17632/skp8szjhc3
title: Multi-time resolution dataset

description: Dataset comprising the input data of OA, SIA, BC and metals in their original time resolution for the multi-time resolution SA.
DOI: 10.3535/34l-p3s-2eq
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ec9-13v-myd
title: Pachystroma Müll.Arg.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pyl-86v-4d2
title: Rectigrewingkia anthelion (Dybowski, 1873)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cy8-f5r-g5m
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/73d-m3y-jvr
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/f2a-xxg-dab
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4gc-b4x-2r6
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gxl-e79-vw4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26876338.v5
title: REGIMPUTE: A Customizable Forest Inventory-Based Mean Imputation Method to Account for Natural Tree Regeneration in the Forest Vegetation Simulator

description: Natural tree regeneration is an important component of forest development that affects stand growth, mortality, and the severity of natural disturbances (e.g., wildfire) over time. The Forest Vegetation Simulator (FVS) largely lacks endogenous tree regeneration models, and thus does not simulate a key process of forest development by default. To date, few exogenous models or tools exist to account for natural tree regeneration in FVS, and especially those that were developed to interface directly with FVS, can be operationalized by non-experts, and applied systematically across broad geographies. To address this issue, we developed REGIMPUTE – a customizable forest inventory-based mean imputation methodology that can add natural tree regeneration into FVS simulations over time. REGIMPUTE utilizes an open-source workflow and a robust sample of empirical observations (Forest Inventory and Analysis [FIA] data) to summarize observed mean natural tree regeneration responses at the FVS variant level, across a broad range of forest structural states and by species. REGIMPUTE is fully operationalized via customizable keyword files that can be edited for varying simulation timelines, conditionality, and user-desired complexity and precision. As stand structure changes over time due to growth, mortality, and disturbance, REGIMPUTE adds species-specific and structural-state appropriate natural tree regeneration into simulations, while accounting for natural tree regeneration that may already be present.File package includes (1) methodology documentation, (2) data files and templates, (3) FVS-ready regen keyword files for all FVS variants, and (4) R script workflow that can be used to largely automate custom empirical sample estimation and keyword file generation based on user-defined criteria.
DOI: 10.6084/m9.figshare.28596078.v1
title: Enlightening the multifarious attributes of the <i>Escherichia coli</i> Sap transport system: a computational perspective

description: Antimicrobial peptides (AMPs) are majorly utilized by the hosts to clear off the invading bacterial pathogens. The AMPs help in the clearance of bacterial pathogens primarily by disrupting their membrane homeostasis. However, most Gram-negative pathogens have developed multiple machineries, enabling them to resist the action of AMPs. One such machinery is the sensitivity to the antimicrobial peptides (Sap) transport system. The Sap system belongs to the ATP-binding cassette (ABC) transporters and consists of five components, viz. SapABCDF. It is reported that it uptakes AMPs inside the cell that are proteolytically degraded by proteases. In contrast, in <i>Escherichia coli</i>, the Sap (<i>Ec</i>Sap) transport system was suggested as a putrescine exporter. In this study, with the aid of computational biological approaches, the functional prospects of the <i>Ec</i>Sap transporter were investigated. The results of this study suggest that the protein <i>Ec</i>SapA can bind dipeptides having aromatic amino acids. Further, it can bind to oligopeptides, including AMPs. AMPs such as protamine and protegrin-1 show binding to the protein <i>Ec</i>SapA. In addition, the molecule heme shows binding affinity toward the protein <i>Ec</i>SapA. In summary, <i>Ec</i>SapA seems to be involved in the uptake of a wide range of molecules, such as dipeptides, AMPs and heme. The results of this study can be utilized to design inhibitors targeting the protein SapA, as inhibiting this protein may render the bacterial system sensitive to the attacking AMPs, hence allowing the host machinery to clear off the invading pathogen. <i>Ec</i>SapA demonstrates a dipeptide-binding affinity consisting of aromatic amino acids.The volume and spatial arrangement of the <i>Ec</i>SapA binding site reveal the possibility of binding larger peptides.<i>Ec</i>SapA shows affinity toward protamine and protegrin-1.Further, <i>Ec</i>SapA displays binding toward heme molecules.The transmembrane domains of the <i>Ec</i>Sap transport system possess a topology similar to the ABC importers. <i>Ec</i>SapA demonstrates a dipeptide-binding affinity consisting of aromatic amino acids. The volume and spatial arrangement of the <i>Ec</i>SapA binding site reveal the possibility of binding larger peptides. <i>Ec</i>SapA shows affinity toward protamine and protegrin-1. Further, <i>Ec</i>SapA displays binding toward heme molecules. The transmembrane domains of the <i>Ec</i>Sap transport system possess a topology similar to the ABC importers.
DOI: 10.6084/m9.figshare.c.3735430_d1.v1
title: Additional file 1: Table S1. of Retention of normal glia function by an isoform-selective protein kinase inhibitor drug candidate that modulates cytokine production and cognitive outcomes

description: Cytokines and Aβ MSD. Source data for cytokine data in Fig. 1 and Aβ data in Fig. 5. (XLS 67 kb)
DOI: 10.3535/dlg-etm-ef3
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/2mk-srv-bjj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/60f-3hh-2xv
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kmz-3hb-kxt
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/79387sp2mg
title: PEEK constant stress rate

description: Constant stress rate tests on PEEK perfromed at different temperatures. It was used for further modelling of material behavior using neural networks
DOI: 10.3535/cam-p81-2aj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cfp-sxn-4vy
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r1l-cz6-e4v
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.