cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/8k8k4b4cvj
title: Wavelength fixing mechanism

description: The data is collected to establish the wavelength fixing mechanism for short-pitch rail corrugation. Average wavelengths are measured on each of the heavily corrugated rail track curves using a ruler. Train speeds are downloaded from a few locomotive black boxes. The speeds data is extracted into an excel spreadsheet. The blackbox downloads data every minute and captures Global Positioning System (GPS) coordinates for the location where the train speeds were captured. Together with train speeds, corrugation wavelengths are used to calculate corrugation frequencies for each track curve. The average corrugation frequencies were saved for correlation to a locomotive traction wheelset natural frequencies. Experimental Modal Analysis was conducted to obtain the point Frequency Response Functions (FRF) of the class D39200 locomotive wheelset. The wheelset resonance modes were obtained and a fundamental resonance mode at 108 Hz is found have a more closer correlation to corrugation frequencies for each track curve. The GPS coordinates were used on Google Earth Pro to view the terrain and gradients of the track curves. The blackbox data downloaded also recorded whether the train was in traction or braking during recording of the data, together with that information, the gradient on Google Earth Pro was used to determine the direction of the train. The excel spreadsheets named with locomotive numbers contain the GPS data downloaded in decimal form, whilst the files with a CSV format shows the GPS data that has been converted to degrees, minutes and seconds. A Finite Element Model was developed to validate the resonance modes of the traction wheelset and also to investigate the mode shapes of the wheels and axle on vibrational excitation. The axle and wheel drawings for the D39200 wheelset used for the model are attached. Modala Analysis was conducted on the rail to capture the vibration phase midspan between two sleepers. The vibration phase was captured for rail on FY and PY-type concrete sleepers; and also on steel sleepers. This exercise was done to investigate the correlation of the vibration phase of the wheels to that of the rail on different types of sleepers. Two excel files named "Rail on steel sleeper vs PY or FY type concrete sleeper". This data also has the captured vibration phase data for the wheels.
DOI: 10.6084/m9.figshare.26963209.v1
title: Dataset of "Predictors of university students’ acceptance of ChatGPT in academic contexts".xlsx

description: The current study aims to examine predictors of university students’ acceptance of ChatGPT in Chinese academic contexts. An online survey elicited 645 valid responses from Chinese university students’ academic community. Employing technology acceptance model as a foundation and structural equation modeling, this research yielded four major findings: (1) Perceived accessibility and computational thinking significantly and positively predict perceived ease of use; (2) Perceived ease of use and computational thinking are significant and positive determinants of perceived usefulness; (3) Perceived usefulness, perceived ease of use, performance expectancy, and academic grit collectively exert significant and positive influences on attitude towards use; (4) Perceived accessibility, computational thinking, and attitude towards use exhibit significant and positive impacts on the behavioral intention to use. These findings may shed valuable insights for academic researchers and technology designers seeking to promote the acceptance of ChatGPT in academic contexts and much broader contexts in China and beyond.
DOI: 10.6084/m9.figshare.7427381.v1
title: AR25 MicroCAT ODO

description: Conductivity, Temperature, Oxygen data from a 2 week period at the VAC site of the ADEON project (June 2018). See project website for details. https://adeon.unh.edu<br>
DOI: 10.17632/2mcwfc5dvs
title: MBU - A Comprehensive Synthetic Underwater Image Dataset

description: The dataset contains 100 photographic images that are treated as ground-truth images. On each ground truth image, the effects of underwater environment are applied and 150 synthetic underwater images are generated. Hence, the data set contains 100 ground-truth photographic images and 100*150=15000 synthetic underwater images. Four effects of the underwater environment, i.e., color cast, blurring, contrast reduction, and low light, are considered. These effects are applied individually and in combinations. Four effects result in a total of 15 combinations, and the effect of each combination is varied by considering 10 levels. This results in a total of 150 images for a single ground-truth image. In addition to this, 21 focus metrics are evaluated on all these 1,50,100 images. The metrics calculated are Absolute central moment (ACMO), Brenner's focus measure (BREN), Image curvature (CURV), Gray-level variance (GLVA), Gray-level local variance (GLLV), Gray-level variance normalized (GLVN), Squared gradient (GRAS), Helmli's measure (HELM), Histogram entropy (HISE), Histogram range (HISR), Energy of Laplacian (LAPE), Diagonal Laplacian (LAPD), Modified Laplacian (LAPM), Variance of Laplacian (LAPV), Tenengrad variance (TENV), Vollat's correlation (VOLA), Wavelet ratio (WAVR), Wavelet sum (WAVS), and Wavelet variance (WAVV). In addition, 7 statistical measures are also calculated. The statistical measures calculated are Mean Intensity, Standard Deviation, Skewness, Kurtosis, Entropy, Contrast, and Sharpness (Laplacian Variance). The literature categorizes these metrics as gradient-based and non-gradient-based.
DOI: 10.6084/m9.figshare.14282171.v1
title: Lower Basal Temperature and Thermal Sum of the Arugula in Conventional and Hydroponic Production Systems

description: Abstract Among the environmental factors that influence plant growth, one of them is the air temperature. The plant growth rate can be determined through its lower basal temperature (Tb), which corresponds to the temperature below which the leaf expansion rate is negligible or occurs in a reduced way. This work aimed to determine Tb and the thermal sum (ST) of the ‘Rococó’ arugula during the time period comprising germination and harvest in conventional and hydroponic production system. The experiment took place in Florianópolis, from April 2018 to March 2020, totalizing five and seven harvests in the conventional and hydroponic production system, respectively. The Tb was obtained by using the average of three methods, namely: least standard deviation in days, relative development and the regression coefficient. With the Tb value, the thermal sum (ST) was determined using the simplified degree-day method for each harvest. From the ST determined values, an average was obtained to establish the ST of the arugula. During the period comprising germination and harvest, considering the conventional and hydroponic production systems, obtained values of Tb were respectively 4,4 and 3,6 °C whereas the ST were 559 and 490 accumulated degree-day.
DOI: 10.17632/s679knnnh4
title: List of nuclear reactions after 8,9,10B(t,*) nuclear reactions.

description: List of nuclear reactions after 8,9,10B(t,*) nuclear reactions by GEANT4 Monte Carlo code.
DOI: 10.26188/28910756
title: Autocycler: full read sets

description: This archive contains the full ONT and Illumina read sets for each genome included in the Autocycler benchmarking study. ONT reads were basecalled with Dorado v0.9.5 using the sup-v5 model. Basic quality control has been applied: minimum Q10 for ONT reads, fastp with default settings for Illumina reads. These reads were used both to generate the high-accuracy reference assemblies and as the source for the subsampled read sets used in benchmarking.See github.com/rrwick/Autocycler-paper for more details.
DOI: 10.26188/28910756.v1
title: Autocycler: full read sets

description: This archive contains the full ONT and Illumina read sets for each genome included in the Autocycler benchmarking study. ONT reads were basecalled with Dorado v0.9.5 using the sup-v5 model. Basic quality control has been applied: minimum Q10 for ONT reads, fastp with default settings for Illumina reads. These reads were used both to generate the high-accuracy reference assemblies and as the source for the subsampled read sets used in benchmarking.See github.com/rrwick/Autocycler-paper for more details.
DOI: 10.6084/m9.figshare.27839637.v1
title: In vivo Terahertz Sensing of Skin Cancer Patients

description: In vivo Terahertz Sensing of Skin Cancer Patients
DOI: 10.6084/m9.figshare.28119677.v1
title: TREEMAP SDI.tif

description: 30 x 30 m SDI raster for CONUS
DOI: 10.6084/m9.figshare.5121022.v1
title: Supplementary Material for: Bromocriptine and Dopamine Mediate Independent and Synergistic Apoptotic Pathways in Pituitary Cells

description: Dopamine (DA) agonists are the primary treatment choice for prolactinoma, effectively suppressing prolactin expression and reducing tumour size. However, the intracellular pathway(s) through which either DA or its agonists impact on proliferation or lead to tumour shrinkage are incompletely understood. To identify the mediators in the apoptotic cascades after DA or DA agonist challenges we used a well-characterized model system, the rodent somatolactotroph cell line GH3. In these cells, we show that apoptosis induced by the DA agonist bromocriptine (BC), but not DA, is initiated through activation of the JNK pathway. However, both DA and BC activate the terminal effector caspase, caspase-3. Kinetic studies and chemical inhibitor co-incubation experiments support a role for JNK activation preceding caspase-9 activation in BC challenged cells, however, engagement of these mediators was not apparent in DA challenge cells. These studies suggest that apoptosis induced by BC or DA is mediated through distinct and independent pathways that converge with activation of the terminal caspase, caspase-3. These observations were further reinforced by our findings that DA and BC, in co-incubation experiments, synergistically induce apoptosis. These findings raise the possibility that drugs acting through the same pathway as DA may be clinically beneficial when combined with BC.
DOI: 10.17632/d4d5f2pk8w
title: Original data for blots

description: Original Western Blot data for manuscript entitle"STAT3 controlled CHI3L1/SPP1 positive feedback loop demonstrates the spatial heterogeneity and immune characteristics of glioblastoma".
DOI: 10.6084/m9.figshare.9778019.v1
title: An Empirical Assessment on Affective Reactions of Novice Developers when Applying Test-Driven Development -- Laboratory Package

description: Contains the experimental material to replicate the experiment by Romano et al. [1].<br><br>Reference:[1] S. Romano, D. Fucci, M. T. Baldassarre, D. Caivano and G. Scanniello: An Empirical Assessment on Affective Reactions of Novice Developers when Applying Test-Driven Development. In proc. of International Conference on Product-Focused Software Process Improvement (PROFES). 2019<br><br>
DOI: 10.6084/m9.figshare.c.3616508_d5.v1
title: Additional file 2: Table S1. of Whole transcriptomic analysis of the plant-beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 during enhanced biofilm formation regulated by maize root exudates

description: Novel noncoding RNAs predicted by Rockhopper. The expression level listed in the table was obtained by Rockhopper. Con_24, negative control, 24 h post- inoculation; Ma_24, maize root exudates treatment, 24 h post-inoculation; Con_48, negative control, 48 h post-inoculation; Ma_48, maize root exudates treatment, 48 h post-inoculation. (XLSX 26 kb)
DOI: 10.17632/yz5np7kdj3
title: Design and Real-Time Implementation of a 2-Rate Control in CPS-Like Environment: Controller Parameters

description: This data repository contains the parameters of the controllers designed for the two degrees of freedom helicopter system considered in the article: "Design and Real-Time Implementation of a 2-Rate Control in CPS-Like Environment" submitted to IEEE Transactions on Aerospace and Electronic Systems journal.
DOI: 10.6084/m9.figshare.21514728.v2
title: myDAUN dataset - tropical trees

description: myDAUN dataset (tropical trees) consists of leaf images collected from 43 tropical tree species in Malaysia. There are 30 leaf images per species with a total of 1290 leaf images. The images are resized for deep learning purposes.
DOI: 10.6084/m9.figshare.28680446.v1
title: Assessing habitat representativeness across individual protected areas uncovers uneven contributions and species-site relationship

description: Ensuring habitat representativeness is fundamental to area-based conservation, yet the effectiveness and efficiency of individual protected areas in meeting this goal remain underexamined, potentially impeding targeted strategies. Here we assessed habitat representativeness, representativeness contribution and representativeness density across China’s protected areas to evaluate their performance in meeting species conservation needs. The overall network’s habitat representativeness was 62.39%, fully meeting conservation needs for 28.33% of species. Among them, 175 protected areas contributed over half of existing achievement for 751 species, including 148 fully dependent on one site, revealing uneven conservation efforts and species-site dependencies. While protected area size correlated with habitat representativeness and contribution, species richness also correlated with contribution and density, showing size alone may not determine efficiency. We then classified protected areas into four efficiency-based categories and proposed tailored strategies. Our metric-driven assessment provides a systematic approach to identifying gaps and optimizing conservation priorities at site level across country.
DOI: 10.6084/m9.figshare.8074361.v1
title: Supplementary Material for: CT-Quantified Adipose Tissue Distribution: Risk or Protective Factor for Complications after Rectal Cancer Surgery?

description: <b><i>Purpose:</i></b> Obesity is associated with increased incidence and mortality in rectal cancer (RC). However, an obesity paradox in the sense of a protective effect of obesity is discussed controversially. We evaluated whether adipose tissue distribution has an impact on medical (MC) and surgical complications (SC) after RC surgery. <b><i>Methods:</i></b> A total of 296 RC patients underwent oncological surgery and multidetector CT with quantification of total (TAT), visceral (VAT), and subcutaneous adipose tissue (SAT). Logistic regressions on SC (anastomotic leakage [<i>n</i> = 26], wound infection [<i>n</i> = 58], bleeding [<i>n</i> = 12], abscess [<i>n</i> = 32], bladder dysfunction [<i>n</i> = 24], burst abdomen [<i>n</i> = 10]), and MC (pulmonary [<i>n</i> = 22], cardiac [<i>n</i> = 18], urinary tract infection [<i>n</i> = 9], sepsis [<i>n</i> = 5]) were performed. <b><i>Results:</i></b> High pelvic<sub></sub>VAT was associated with reduced risk for overall SC (OR = 0.915, <i>p</i> = 0.012) and anastomotic leakage (OR = 0.587, <i>p</i> = 0.024, CI: 0.369/0.934). In contrast, CT-quantified obesity was associated with increased risk for wound infection, bladder dysfunction, burst abdomen, overall MC, and cardiac complications (ORs up to 1.423). BMI was not associated with any SC or MC. <b><i>Conclusion:</i></b> An obesity paradox with a protective effect of CT-quantified adipose tissue was confirmed for anastomotic leakage and overall SC. In contrast, high adipose tissue was associated with higher risk for other SC and MC. These results show a more complex influence of body composition on MC and SC. CT-quantified obesity is able to provide deeper insights to explain the obesity paradox beyond BMI.
DOI: 10.6084/m9.figshare.17427353.v1
title: Manipulated stimuli

description: 59 stimuli of background blurred version
DOI: 10.6084/m9.figshare.27117357.v1
title: Supplementary Material for: Recurrent Fibrillary Glomerulonephritis Secondary to Chronic Lymphocytic Leukaemia: Remission of kidney disease with Ibrutinib

description: Fibrillary glomerulonephritis (FGN) is a rare form of glomerular disease accounting for less than 1 percent of all renal biopsies. It is characterized by pathognomonic electron microscopic findings of fibrillar deposits in the mesangium and glomerular capillary walls. FGN was initially considered to be an idiopathic disorder. However, approximately 30 to 50 percent of patients have a secondary cause including a history of malignancy in up to 23% of cases. Chronic lymphocytic leukemia (CLL) is a rare cause of FGN with limited data and poor prognosis. In this case report, we present a 69-year-old male who was diagnosed with CLL in 2013 he was initially managed conservatively. He developed subsequent nephrotic syndrome and renal impairment in 2016. A renal biopsy showed FGN and treatment was targeted to the CLL with bendamustine and rituximab which led to remission of nephrotic syndrome and improvement in renal function. After 3 years of clinical remission, the nephrotic syndrome relapsed, and he underwent a repeat renal biopsy confirming ongoing FGN. A bone marrow biopsy confirmed CLL relapse and he was treated with ibrutinib (a tyrosine kinase inhibitor). He achieved a significant organ response and a further sustained remission. This case highlights the success of treating a potentially identifiable cause of FGN and highlights that even at relapse treatment can confer benefits and help to prevent end-stage renal failure.
DOI: 10.6084/m9.figshare.155735.v1
title: Oratorical Piece (Winner)

description: This piece won during the competetion held in Cagayan de Oro city
DOI: 10.6084/m9.figshare.25347841.v1
title: Supplementary Material for: Upregulated Genes in Atrial Fibrillation Blood and the Left Atrium

description: Introduction: Atrial fibrillation (AF) is a common arrhythmia associated with aging. Many known risk factors are associated with AF, but many senior individuals do not develop AF despite having multiple risk factors. This finding suggests that other factors may be involved in AF onset. This study aimed to identify upregulated genes in the peripheral blood and left atrium of patients with AF. These genes may serve as potential biomarkers to predict AF onset risk and its complications. Methods: Gene expression data was analyzed from blood (n = 3) and left atrial samples (n = 15) of patients with AF and sinus rhythm. We evaluated the significant genes identified using p-value analysis of weighted average difference to confirm their rankings. We created figures for the genes using GeneMANIA and performed a functional analysis using Cytoscape3.10.1. Hub and bottleneck genes were identified based on degree and betweenness centrality. We used RefEx to confirm the organs in which the extracted genes were expressed. Heatmaps and Gene ontology term evaluation were performed to further elucidate the biological functions of the genes. Results: We identified 12 upregulated genes (CAST, ASAH1, MAFB, VCAN, DDIT4, FTL, HEXB, PROS1, BNIP3L, PABPC1, YBX3, and S100A6) in both the blood and left atrium of patients with AF. We analyzed the gene functions using GeneMANIA and Cytoscape. The identified genes were involved in a variety of pathways, including lysosomal function and lipid and sphingolipid catabolism. Next, we investigated whether the 12 identified genes identified were systemically expressed or had high organ specificity. Finally, Reference expression (RefEx) was used to analyze the gene expression levels in various tissues. Four genes; FTL, ASAH1, S100A6, and PABPC1, were highly expressed in the normal heart tissue. Finally, we evaluated the expression levels of the 12 genes in the blood of patients with AF using a heatmap. Our findings suggest that the 12 genes identified in this study, especially the lysosome-related genes (FTL and ASAH1), may be involved in AF pathogenesis. Conclusion: Lysosome-related genes may be important to understand the AF pathophysiology and to develop AF-related future studies.
DOI: 10.17632/x67sbzj986
title: Data for: Predictive Identification of Co-formers in Co-amorphous Systems

description: The SIMCA file for Predictive Identification of Co-formers in Co-amorphous Systems
DOI: 10.6084/m9.figshare.25954690.v1
title: C2LinearFading02 - source signals + refined ones

description: The zip file consists of groups/clusters of signals (refined signals) that are time-separated subsequences obtained from of the source signals. Refined signals have very similar initial values (in terms of value, and the first derivative, and the second one).<br><br>Usage of refined signals allows for examining the influence of insignificant differences in the initial conditions on the signal trajectory, which contributes to the potential detection of chaotic properties of the tested system.<br>The method is described here: https://draugustyn.gitlab.io/refined-signals-4-chaos-detection .<br>The zip file contains either source signals (C2LinearFading02-<b><i>m</i></b>.txt, where <b><i>m</i></b> = 1..10) or refined ones (C2LinearFading02-<b><i>c</i></b>-<b><i>i-datetime</i></b>.txt, where <b><i>c</i></b> - a cluster identifier, <b><i>i</i></b> = 1..3 or 1..2 - index of a signal in a cluster).<br><br>Source signals come from the figshare project “Datasets for learning of unknown characteristics of dynamical systems”.<br>The source signal for linear dumped oscillator - (<b>slow </b>oscillations with decreasing amplitude) (denoted by DOSC_2) is described here: https://draugustyn.gitlab.io/signal-data/<br>
DOI: 10.6084/m9.figshare.28748228.v1
title: This repository contains data and code used in the seismic and petrological analysis described in our study.

description: README<br>This repository contains data and code used in the seismic and petrological analysis described in our study.<br>1. Receiver Function (RF) WaveformsRaw receiver functions (RFs) were obtained using Gaussian low-pass filters with different width parameters (a). The filtered RFs are organized in the following directories:• ./RFwaveforms/Deconv-1.0 – RFs with Gaussian filter parameter a = 1.0• ./RFwaveforms/Deconv-2.0 – RFs with Gaussian filter parameter a = 2.0• ./RFwaveforms/Deconv-3.0 – RFs with Gaussian filter parameter a = 3.0• ./RFwaveforms/Sta.info – Station location information<br><br>2. Trans-Dimensional Bayesian Joint Inversion CodeThe joint inversion was performed using a trans-dimensional Markov Chain Monte Carlo (McMC) Bayesian framework.Code is provided in: ./McMC-jointinvPlease check the Makefile for installing.<br>3. Obtained Velocity ModelsFinal Vs and Vp/Vs models obtained from the joint inversion are stored in: ./VelocityModels/${STA}/${STA}-${backazimuth}Each folder corresponds to a specific station and back-azimuth combination.<br>4. Petrological ModelingPetrological modeling was conducted using a modified version of the ElasticC code, originally available at: https://github.com/michpaulatto/ElasticC.The code has been modified to support three-phase modeling (solid + melt + fluid).