cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4928765.v1
title: Measurement of Laminar Flame Speed and Chemical Kinetic Model of 1-Pentene/Air Mixtures

description: 1-Pentene is the main composition of alkene in practical gasolines. Laminar flame speeds of 1-pentene/air were measured in a constant volume combustion bomb at initial pressures of 0.1 MPa and 0.3 MPa, initial temperatures of 350 K and 450 K, and equivalence ratios ranging from 0.5 to 1.6. A new chemical model including 83 species and 560 reactions was developed by reaction pathway analysis for mechanism reduction and core mechanism combination based on the available detail models, which can be better predicted laminar flame speed and ignition delay time in all tested conditions. Sensitivity analyses indicate that the laminar flame speed of 1-pentene/air mixtures mainly results from the thermal effect at different initial temperature, and the chemical effect at various equivalence ratios. The analyses also show that the initial pressure affects the relative contribution of the H and OH radicals to the laminar flame propagation of 1-pentene and the effect becomes smaller between H and OH radicals with the increase of equivalence ratio.
DOI: 10.6084/m9.figshare.4928750.v2
title: Road traffic injury in sub-Saharan African countries: A systematic review and summary of observational studies

description: <b>Objective</b>: The aim of this study is to evaluate, through a systematic review of hospital-based studies, the proportion of road traffic injuries and fatalities in sub-Saharan Africa (SSA). <b>Methods</b>: In accordance with Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) and Meta-analysis of Observational Studies in Epidemiology guidelines, we searched the following electronic databases: PubMed, Embase, Africa-Wide Information, Global Health, and Web of Science. Articles were eligible if they measured proportion of road traffic injuries (RTIs) in SSA by using hospital-based studies. In addition, a reference and citation analysis was conducted as well as a data quality assessment. <b>Results</b>: Up to 2015, there were a total of 83 hospital-based epidemiologic studies, including 310,660 trauma patients and 99,751 RTI cases, in 13 SSA countries. The median proportion of RTIs among trauma patients was 32% (4 to 91%), of which the median proportion of death for the included articles was 5% (0.3 to 41%). <b>Conclusion</b>: The number of studies evaluating RTI proportions and fatalities in SSA countries is increasing but without the exponential rise expected from World Health Organization calls for research during the Decade of Action for Road Traffic Injuries. Further research infrastructure including standardization of taxonomy, definitions, and data reporting measures, as well as funding, would allow for improved cross-country comparisons.
DOI: 10.6084/m9.figshare.4928750.v1
title: Road Traffic Injury in Sub-Saharan African Countries: A Systematic Review and Summary of Observational Studies

description: <b>Objective</b>: The aim of this study is to evaluate, through a systematic review of hospital based studies, the proportion of road traffic injuries and fatalities in SSA. <b>Methods</b>: In accordance with PRISMA and MOOSE guidelines we searched the following electronic databases: PubMed, Embase, Africa-Wide Information, Global Health, and Web of Science. Articles were eligible if they measured proportion of RTIs in SSA by using hospital based studies. In addition, a reference and citation analysis was conducted as well as a data quality assessment. <b>Results</b>: Until to 2015 there were a total of 83 hospital based epidemiologic studies including 310,660 trauma patients and 99,751 RTI cases, in 13 SSA countries. The median proportion of RTI among trauma patients was 32% (4% to 91%), of those the median proportion of death for the included articles was 5% (0.3% to 41%). <b>Conclusion</b>: The number of studies evaluating RTI proportion and fatalities in SSA countries is increasing but without the exponential rise expected from WHO calls for research during the “Decade of Action for Road Traffic Injuries.” Further research infrastructure including standardization of taxonomy, definitions, and data reporting measures, as well as funding, would allow for improved cross-country comparisons.
DOI: 10.6084/m9.figshare.4928738
title: High beam headlamp use rates: Effects of rurality, proximity of other traffic, and roadway curvature

description: <b>Objective</b>: The few observational studies of the prevalence of high beam use indicate the rate of high beam use is about 25% when vehicles are isolated from other vehicles on unlit roads. Recent studies were limited to 2-lane rural roads and used measurement methods that likely overestimated use. The current study examined factors associated with the rate of high beam use of isolated vehicles on a variety of roadways in the Ann Arbor, Michigan area. <b>Methods</b>: Twenty observation sites were categorized as urban, rural, or on a rural/urban boundary and selected to estimate the effects of street lighting, road curvature, and direction of travel relative to the city on high beam use. Sites were selected in pairs so that a majority of traffic passing one site also passed through the other. Measurement of high beams relied on video data recorded for 2 nights at each site, and the video data also were used to derive a precise measure of the proximity of other traffic. Nearly 3,200 isolated vehicles (10 s or longer from other vehicles) were observed, representing 1,500-plus vehicle pairs. <b>Results</b>: Across the sample, 18% of the vehicles used high beams. Seventy-three percent of the 1,500-plus vehicle pairs used low beams at each paired site, whereas 9% used high beams at both sites. Vehicles at rural sites and sites at the boundaries of Ann Arbor were more likely to use high beams than vehicles at urban sites, but use in rural areas compared with rural/urban boundary areas did not vary significantly. Rates at all sites were much lower than expected, ranging from 0.9 to 52.9%. High beam use generally increased with greater time between subject vehicles and leading vehicles and vehicles in the opposing lane. There were mixed findings associated with street lighting, road curvature, and direction of travel relative to the city. <b>Conclusion</b>: Maximizing visibility available to drivers from headlights includes addressing the substantial underuse of high beam headlamps. Advanced technologies such as high beam assist, which switches automatically between high and low beam headlamps depending on the presence of other traffic, can help to address this problem.
DOI: 10.6084/m9.figshare.4928738.v2
title: High beam headlamp use rates: Effects of rurality, proximity of other traffic, and roadway curvature

description: <b>Objective</b>: The few observational studies of the prevalence of high beam use indicate the rate of high beam use is about 25% when vehicles are isolated from other vehicles on unlit roads. Recent studies were limited to 2-lane rural roads and used measurement methods that likely overestimated use. The current study examined factors associated with the rate of high beam use of isolated vehicles on a variety of roadways in the Ann Arbor, Michigan area. <b>Methods</b>: Twenty observation sites were categorized as urban, rural, or on a rural/urban boundary and selected to estimate the effects of street lighting, road curvature, and direction of travel relative to the city on high beam use. Sites were selected in pairs so that a majority of traffic passing one site also passed through the other. Measurement of high beams relied on video data recorded for 2 nights at each site, and the video data also were used to derive a precise measure of the proximity of other traffic. Nearly 3,200 isolated vehicles (10 s or longer from other vehicles) were observed, representing 1,500-plus vehicle pairs. <b>Results</b>: Across the sample, 18% of the vehicles used high beams. Seventy-three percent of the 1,500-plus vehicle pairs used low beams at each paired site, whereas 9% used high beams at both sites. Vehicles at rural sites and sites at the boundaries of Ann Arbor were more likely to use high beams than vehicles at urban sites, but use in rural areas compared with rural/urban boundary areas did not vary significantly. Rates at all sites were much lower than expected, ranging from 0.9 to 52.9%. High beam use generally increased with greater time between subject vehicles and leading vehicles and vehicles in the opposing lane. There were mixed findings associated with street lighting, road curvature, and direction of travel relative to the city. <b>Conclusion</b>: Maximizing visibility available to drivers from headlights includes addressing the substantial underuse of high beam headlamps. Advanced technologies such as high beam assist, which switches automatically between high and low beam headlamps depending on the presence of other traffic, can help to address this problem.
DOI: 10.6084/m9.figshare.4928684
title: Mussaurus musculoskeletal models

description: Models for Mussaurus forelimb; SIMM .jnt (joint), .msl (muscle) and .asc (bones) files. All can be opened as text files, and are provided in a .zip archive. The "Rebuild" files are elbow sensitivity analyses (cartilage/wrapping; see paper Methods) only; see the "NOTES.txt" file for information.
DOI: 10.6084/m9.figshare.4928693
title: Global Ocean Surface Diffusivities derived from Altimetry

description: The final realistic results are in the file `K_mix_uncorrected.nc`.<br>This file should be used for analysis purposes.<br>All other files are needed to reproduce results and plots using the analysis code (https://github.com/jbusecke/busecke_abernathey_2019_sciadv).<br>Permanently archived code from publication date can be found at https://zenodo.org/record/1472889.<br><br><br><br>
DOI: 10.6084/m9.figshare.4928696
title: Crocodylus musculoskeletal models

description: Models for Crocodylus johnstoni forelimb; SIMM .jnt (joint), .msl (muscle) and .asc (bones + muscles) files. All can be opened as text files, and are provided in a .zip archive.
DOI: 10.6084/m9.figshare.4924868
title: Phylogenetic analyses reveal cryptic species in Phtheirospermun (Orobanchaceae) from the Hengduan Mountains region

description: Molecular dating of Lamiales, with an emphasis on Orobanchaceae.
DOI: 10.6084/m9.figshare.4928684.v1
title: Mussaurus musculoskeletal models

description: Models for Mussaurus forelimb; SIMM .jnt (joint), .msl (muscle) and .asc (bones) files. All can be opened as text files, and are provided in a .zip archive. The "Rebuild" files are elbow sensitivity analyses (cartilage/wrapping; see paper Methods) only; see the "NOTES.txt" file for information.
DOI: 10.6084/m9.figshare.4924868.v1
title: Phylogenetic analyses reveal cryptic species in Phtheirospermun (Orobanchaceae) from the Hengduan Mountains region

description: Molecular dating of Lamiales, with an emphasis on Orobanchaceae.
DOI: 10.6084/m9.figshare.4924820.v1
title: Geology of Piemonte region (NW Italy, Alps–Apennines interference zone)

description: The geological map of Piemonte Region (Italy) is a graphic representation of the geology of the region, grounded on a large geodatabase, that can be also browsed as an interactive scalable map (GeoPiemonte Map) using a WebGIS application. The Map, produced at 1:250,000 scale, is the first original release of the ‘GeoPiemonte Map’ project. The geological data represented on the map derive from a thorough revision of available geological maps and literature, integrated with unpublished original data. The revision and harmonisation of existing and new data have been based on explicit criteria used for the classification of geologic units and their representation on the Map. These criteria firstly aimed at providing a lithostratigraphic, hierarchic subdivision of Piemonte geologic units and describing them using shared concepts and vocabularies, consistent with IUGS Descriptive Standards for the Geosciences.
DOI: 10.6084/m9.figshare.4924748
title: Protein clusters Nitrospira pangenome

description: Protein clusters sequences from the pangenomics analysis included in the manuscript: "Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox <i>Nitrospira</i>"
DOI: 10.6084/m9.figshare.4924694
title: Fileset: Procedure for transforming 3D computed tomography (CT) skull and face models to a common orientation.

description: This fileset provides figures, a spreadsheet, and a Meshlab script for transforming 3D skull and face models reconstructed from computed tomography (CT) scans to a common orientation (Frankfurt Horizontal with Nasion centered). The spreadsheet requires x-, y-, z-coordinates for Nasion (N), Left Orbitale (OrL), Left and Right Porion (PoL and PoR). After the coordinates are pasted in, the spreadsheet calculates the rotations and translation to orient the skull and/or face model so that N is at x = 0, OrL, PoL, and PoR are at z = 0, and PoL and PoR are at y = 0. The calculated values can be applied to the 3D skull and face models within Meshlab following the steps outlined in the figures.<br>The figures outline the steps for entering the numbers manually, step-by-step in the appropriate Meshlab filters, while the attached Meshlab script (.mlx) allows the steps to be run all at once after entering the appropriate values into the script.<br><br>This procedure will allow pre-existing 3D head models to be rotated and translated into a common orientation for use in forensic craniofacial identification research and practice, to include forensic facial approximation and craniofacial superimposition. The standardized orientation will allow the visualization and quantification of the relationships of bone and soft tissue anatomical landmarks in front view, profile view, and in any axis.
DOI: 10.6084/m9.figshare.4924724
title: Supplementary : The Landscape of Isoform Switches in Human Cancers

description: Supplementary tables for our article "The Landscape of Isoform Switches in Human Cancers"
DOI: 10.6084/m9.figshare.4924748.v2
title: Protein clusters Nitrospira pangenome

description: Protein clusters sequences from the pangenomics analysis included in the manuscript: "Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox <i>Nitrospira</i>"
DOI: 10.6084/m9.figshare.4924748.v1
title: Protein clusters Nitrospira pangenome

description: Protein clusters sequences from the pangenomics analysis included in the manuscript: "Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox <i>Nitrospira</i>"
DOI: 10.6084/m9.figshare.4924586
title: R code and data files (Tietje and Rödel 2017) from Contradicting habitat type: extinction risk relationships between living and fossil amphibians

description: R code and all data files required to repeat the analyis. Unpack the file, open the R script "Tietje_Rodel_analysis.R" and set the working directory to the unpacked folder to run the script.
DOI: 10.6084/m9.figshare.4924580
title: Paleobiology Database references (Tietje and Rödel 2017) from Contradicting habitat type: extinction risk relationships between living and fossil amphibians

description: Csv file containing a reference list for Paleobiology Database data used in Tietje and Rödel 2017.
DOI: 10.6084/m9.figshare.4924574
title: Supporting Information 2 from A new ankylosaurine dinosaur from the Judith River Formation of Montana, USA, based on an exceptional skeleton with soft tissue preservation

description: Character-taxon matrix for the phylogenetic analysis (.nex)
DOI: 10.6084/m9.figshare.4924586.v1
title: R code and data files (Tietje and Rödel 2017) from Contradicting habitat type: extinction risk relationships between living and fossil amphibians

description: R code and all data files required to repeat the analyis. Unpack the file, open the R script "Tietje_Rodel_analysis.R" and set the working directory to the unpacked folder to run the script.
DOI: 10.6084/m9.figshare.4924574.v1
title: Supporting Information 2 from A new ankylosaurine dinosaur from the Judith River Formation of Montana, USA, based on an exceptional skeleton with soft tissue preservation

description: Character-taxon matrix for the phylogenetic analysis (.nex)
DOI: 10.6084/m9.figshare.4924580.v1
title: Paleobiology Database references (Tietje and Rödel 2017) from Contradicting habitat type: extinction risk relationships between living and fossil amphibians

description: Csv file containing a reference list for Paleobiology Database data used in Tietje and Rödel 2017.
DOI: 10.6084/m9.figshare.4924565
title: Supplementary data from Dog growls express various contextual and affective content for human listeners

description: The raw data used in the analysis.
DOI: 10.6084/m9.figshare.4924571
title: Lithology and specimen completeness references (Tietje and Rödel 2017) from Contradicting habitat type: extinction risk relationships between living and fossil amphibians

description: Csv file containing a reference list for used literature on lithology information and specimen completeness in Tietje and Rödel 2017.
DOI: 10.6084/m9.figshare.4924571.v1
title: Lithology and specimen completeness references (Tietje and Rödel 2017) from Contradicting habitat type: extinction risk relationships between living and fossil amphibians

description: Csv file containing a reference list for used literature on lithology information and specimen completeness in Tietje and Rödel 2017.
DOI: 10.1184/r1/4924532
title: Beam Asymmetry Data from GlueX

description: This Excel Spread sheet contains the significant data from the first GlueX publication.<br>
DOI: 10.1184/r1/4924532.v1
title: Beam Asymmetry Data from GlueX

description: This Excel Spread sheet contains the significant data from the first GlueX publication.<br>
DOI: 10.6084/m9.figshare.4924418
title: Net Profit Flows 1980-2009.dta

description: The dataset contains the variables that were used in the research project 'Net Profit Flow per Country from 1980 to 2009: The Long-Term Effects of Foreign Direct Investment'.<br>All variables are from publicly available sources - see the Support file, Appendix 2 of the paper with the same name.<br>It contains the original variables as downloaded or collected from public sources plus calculated variables, computed using the original ones.<br>The dataset is in Stata 14 format.<br>
DOI: 10.6084/m9.figshare.4924439
title: II.8 - Agrogenom synthesis of genome evolution scenarios

description: Finalisation of the reconciliation procedure by recomputing the block events based on the final event set and summarizing of ancestral states and events from each gene (sub)family into a pangenome-wide synthesis of species evolutionary history.<br>The event block reports are analogous to the output of step #II.5; the previous and final block set are mostly overlapping, and block_ids of identical blocks are preserved across these sets.<br>The genome history synthesis is generated by ancestral_content.py script ; note it could be done within the same run as as ancestral content reconstruction (previous step #II.7). The output notably includes:- <i>synthesis/</i> folder: - <i>genome_synthesis.*</i> files: species tree annotated with the sum of events (duplication, transfer, origination, loss, replacement) and of gene counts over all families, in extended Newick format (with bracketed comments at nodes) and as a serialized Python object (pickle) - <i>genome_*_synthesis.nhx</i> files: idem but separating annotation of gene count (states) and event count - <i>phylogenetic_profiles/</i> folder: tables of state count per gene family or orthologous subfamily, and by species tree node (any or extant nodes = "leaf" only)<br> - <i>annottables/</i> folder: tables of orthologous gene subfamilies specifically gained/lost at a species tree node, or specifically present/absent in a clade, with the list of corresponding genes in extant genomes, their coordinates and their functional annotation.<br>- <i>ortho_subfam_*.tab</i> files: tables of orthologous subfamilies assignation of gene sequence identifiers or of unique event identifiers, respectively.<br> - <i>specific_gene_dump.tab</i> file: relational database table dump listing the specific gene sets (see <i>annottables/</i> folder)<br> - <i>phylogenetic_profile_dump.tab</i> file: relational database table dump listing presence/absence states of (sub)families at each species tree node (see - <i>phylogenetic_profiles/</i> folder<i>)<br></i>- <i>reconciliation_collection/</i> folder: updated and final set of reconciled gene trees in phyloXML and serialized Python object (pickle) formats.<br><br>
DOI: 10.6084/m9.figshare.4924394
title: †Peltosynidae, a new beetle family from the Middle–Late Triassic of Kyrgyzstan: its affinities with Polyphaga (Insecta, Coleoptera) and the groundplan of this megadiverse suborder

description: Middle–Late Triassic fossil beetles previously assigned to Polyphaga <i>incertae sedis</i> and new material from this period are described and illustrated. †Peltosynidae fam. nov. is introduced to contain the type genus <i>Peltosyne</i>, and species <i>P. triassica</i> Ponomarenko, 1977, together with the new species <i>P. varyvrosa</i> sp. nov. Two new monospecific genera, <i>Gnathopeltos</i> gen. nov. and <i>Ofthalmopeltos</i> gen. nov., with type species <i>G. dixis</i> sp. nov. and <i>O. synkritos</i> sp. nov., are also included in †Peltosynidae. Morphological characters evaluated with respect to their phylogenetic significance confirm that the family belongs to the suborder Polyphaga, mainly supported by the apomorphic internalized propleura. †Peltosynidae is characterized by a large transverse head, long and prominent, strongly developed mandibles, a short prosternum with a narrow, relatively short prosternal process, an interlocking mechanism between this process and a groove of the anteromedian process of the mesoventrite, striated elytra, a short metakatepisternum, transverse coxae, and a short abdomen with five ventrites. The large and transverse head is a potential autapomorphy. †Peltosynidae do not fit into any of the seven extant major polyphagan infraorders (series). The presence of a mesothoracic transverse katepisternal ridge in †<i>Peltosyne</i> is a plesiomorphic feature distinguishing the new family from all other groups of the suborder and suggesting its placement in the stem-group of Polyphaga. The strongly prominent mandibles and the coarse body sculpture resemble features found in extant Archostemata. It is likely that the beetles were xylophagous and adapted to subcortical habitats, arguably maintaining plesiomorphies. The polyphagan groundplan is reconstructed based on recent phylogenies and features found in †Peltosynidae and other extinct and extant groups. A scenario for the evolution of non-archostematan beetles in the late Permian and early Mesozoic is presented. http://zoobank.org/urn:lsid:zoobank.org:pub:58428459-33EF-4C1C-AD69-A066D3D33ADF
DOI: 10.6084/m9.figshare.4924418.v1
title: Net Profit Flows 1980-2009.dta

description: The dataset contains the variables that were used in the research project 'Net Profit Flow per Country from 1980 to 2009: The Long-Term Effects of Foreign Direct Investment'.<br>All variables are from publicly available sources - see the Support file, Appendix 2 of the paper with the same name.<br>It contains the original variables as downloaded or collected from public sources plus calculated variables, computed using the original ones.<br>The dataset is in Stata 14 format.<br>