cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24130395.v1
title: Datasets for neighbor-dependent gene expression analysis with CellNeighborEX

description: The following datasets were used for CellNeighborEX:<b>SSembryo_log_data.txt</b> is the pre-processed expression data file in the mouse embryo Slide-seq data (Puck_190926_03). <b>SSembryo_cell_id.txt</b> contains information on the bead barcodes in the embryo data. <b>SSembryo_gene_name.txt</b> is the list of top 2000 genes plus cell type markers for the embryo data.<b>SSembryo_RCTD.csv</b> is the data file produced based on the result of deconvolution tool RCTD for the embryo data.<b>SSembryo_abbrev.csv</b> includes the abbreviations for cell types in the embryo data.<b>SShippo_log_data.txt</b> is the pre-processed expression data file in the mouse hippocampus Slide-seq data (Puck_200115_08). <b>SShippo_cell_id.txt </b>contains information on the bead barcodes in the hippocampus data. <b>SShippo_gene_name.txt</b> is the list of top 2000 genes plus cell type markers for the hippocampus data.<b>SShippo_RCTD.csv</b> is the data file produced based on the result of deconvolution tool RCTD for the hippocampus data.<b>SShippo_abbrev.csv</b> includes the abbreviations for cell types in the hippocampus data.<b>SSliver_log_data.txt </b>is the pre-processed expression data file in the mouse liver cancer Slide-seq data (mouse_liver_met_2_rna_201002_04). <b>SSliver_cell_id.txt</b> contains information on the bead barcodes in the liver cancer data. <b>SSliver_gene_name.txt</b> is the list of top 2000 genes plus cell type markers for the liver cancer data.<b>SSliver_RCTD.csv</b> is the data file produced based on the result of deconvolution tool RCTD for the liver cancer data.
DOI: 10.6084/m9.figshare.25713843.v2
title: <b>Draft genome sequences of three endophytic </b><b><i>Serratia liquefaciens</i></b><b> strains isolated from vegetables, South Africa</b>

description: Here, we present the safety analysis of three Serratia liquefaciens strains, considered as potential plant endophytes, isolated from vegetables. Strain M17KBT1B was isolated from tomatoes, while M17VKL4B and M17VKL4D were found in lettuce from farms in the North-West (32° 45’ 31.867’’ N, 97° 19’ 43.702 E) and Gauteng (26°16’14.733’’ S, 28°6’44.164 E) provinces, respectively. The genome annotations for each strain has been made available in genebank format while the predicted resistance and virulence genes can be found in the respective spreadsheets.
DOI: 10.6084/m9.figshare.26492122.v1
title: DevCCFv1 Unwarped LSFM Templates

description: <b>This dataset includes the unwarped LSFM Templates for DevCCFv1 (follow DOI link below for details)</b>
DOI: 10.6084/m9.figshare.27283968.v1
title: Dataset.xlsx

description: Dataset for Autistic people differ from non-autistic people subjectively, but not objectively in their reasoning
DOI: 10.6084/m9.figshare.28777943.v1
title: Supplementary Material for: Brain metastases of a triple-negative breast cancer – A systematic literature review of the systemic treatment options

description: Background: The development of brain metastases (BM) is an increasing concern for patients with metastatic triple-negative breast cancer (mTNBC). This systematic review aims to summarize the current evidence regarding systemic treatment options for patients with mTNBC and BM. 
Methods: A systematic literature review was conducted by searching the database 
PubMed with the key words „metastatic triple-negative breast cancer“, ”therapy“ and “brain metastases”. Articles were screened and included if they focused on the treatment of mTNBC. Both prospective and retrospective clinical trials were eligible for inclusion. 
Results:The literature search identified 3,413 articles, of which eight met the inclusion criteria. These studies provided evidence for the treatment of patients with stable BM using Sacituzumab Govitecan (SG), Pembrolizumab combined with chemotherapy, Trastuzumab Deruxtecan (T-DXd), Nab-paclitaxel combined with Cisplatin, and Talazoparib. 
No evidence was found for active BM or leptomeningeal metastases. 
Conclusion: Based on the current evidence discussed in this review, testing for PD-L1, HER2, including immunohistochemistry (IHC) status as well as germline BRCA 1/2 mutation should be considered in all mTNBC patients with BM as the results have significant treatment implications.. Moreover, PD-L1 expression should be evaluated on primary tumor and (if tissue sample available) reevaluated on BMs if negative on primary BC, to maximize the opportunity for treatment with immune checkpoint inhibitors (ICI). Furthemore, if brain tissue available HER2 IHC should also be tested in order to evaluate the status switch and to assess the therapeutic effectiveness of treatment with T-DXd. 
Further targeted agents are urgently needed in order to improve the survival of patients with TNBC and BM
DOI: 10.6084/m9.figshare.3558249.v1
title: Appendix A. Description and codes for the variables and species of the plant data set.

description: Description and codes for the variables and species of the plant data set.
DOI: 10.6084/m9.figshare.9786026.v2
title: all_consensus_snp_P1_P2_informative.vcf

description: RAD sequencing of Lepidium campestre, informative SNP between parents of cross.
DOI: 10.17632/v9xwpbzb5h
title: Appraisal of the Benefits and Barriers of the African Continental Free Trade Agreement: Implications for Nigeria's Export Strategies

description: This study critically evaluated the benefits of the African Continental Free Trade Agreement (AfCFTA) on economic growth in Nigeria. The study adopts qualitative method to assess the barriers of AfCFTA on Nigeria's export strategies. More so, it builds on inductive approach to appraise the measures of economic diversification on net exports of Nigeria. This study adopts institutional theory and macroeconomic principles to unveil that AfCFTA has significant benefits for Nigeria's export strategies. This study concludes that AfCFTA contains some benefits and barriers especially during national implementation phase. It recommends appropriate institutional measures to boost the benefits of this economic agreement in Nigeria.
DOI: 10.5517/ccdc.csd.cc2jdvc5
title: CCDC 2336047: Experimental Crystal Structure Determination

description: Related Article: Yu Li, Chen Cao, Teng-Fei Zheng, He-Rui Wen, Sui-Jun Liu|2025|Inorg.Chem.|64|10320|doi:10.1021/acs.inorgchem.5c01534
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m7186
title: CCDC 2419837: Experimental Crystal Structure Determination

description: Related Article: Xiaoye Chen, Chi-Ming Au, Pengyuan Fang, Yunsheng Xue, Ken Cham-Fai Leung, Wai-Lun Chan|2025|Org.Lett.|27|5081|doi:10.1021/acs.orglett.5c01162
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.11962227.v1
title: L2 Section, Sample 09. 72 Year Old Female

description: A 3 mm thick para-sagittal slice of L2 vertebra from an 72 year old female embedded in PMMA then micro-milled block surfaces carbon coated for quantitative 20kV BSE SEM.<br><br>Later polished to remove coating and then imaged with high-contrast X-Ray Micro-tomography at 90 kV with 30 micron voxel size.
DOI: 10.6084/m9.figshare.12753470.v1
title: dataset Fabry disease

description: FMD, AIX treatment agalsidase beta vs placebo in Fabry patients
DOI: 10.6084/m9.figshare.14169845.v1
title: Supplementary Material for: Structural Brain Changes during the Neonatal Period in a Rabbit Model of Intrauterine Growth Restriction

description: <b><i>Background:</i></b> Intrauterine growth restriction (IUGR) is associated with abnormal neurodevelopment, but the associated structural brain changes are poorly documented. The aim of this study was to describe in an animal model the brain changes at the cellular level in the gray and white matter induced by IUGR during the neonatal period. <b><i>Methods:</i></b> The IUGR model was surgically induced in pregnant rabbits by ligating 40–50% of the uteroplacental vessels in 1 horn, whereas the uteroplacental vessels of the contralateral horn were not ligated. After 5 days, IUGR animals from the ligated horn and controls from the nonligated were delivered. On the day of delivery, perinatal data and placentas were collected. On postnatal day 1, functional changes were first evaluated, and thereafter, neuronal arborization in the frontal cortex and density of pre-oligodendrocytes, astrocytes, and microglia in the corpus callosum were evaluated. <b><i>Results:</i></b> Higher stillbirth in IUGR fetuses together with a reduced birth weight as compared to controls was evidenced. IUGR animals showed poorer functional results, an altered neuronal arborization pattern, and a decrease in the pre-oligodendrocytes, with no differences in microglia and astrocyte densities. <b><i>Conclusions:</i></b> Overall, in the rabbit model used, IUGR is related to functional and brain changes evidenced already at birth, including changes in the neuronal arborization and abnormal oligodendrocyte maturation.
DOI: 10.6084/m9.figshare.14398835.v3
title: Poland Covid-19 Third Wave

description: This is a dataset and questionnaire from internet panel study. Data were collected between 24-27 November 2020.
DOI: 10.6084/m9.figshare.14672286.v1
title: alldata_10_input.csv

description: Input file for submitted manuscript <br>
DOI: 10.6084/m9.figshare.22747016.v1
title: gillnet_acoustic_data.csv

description: Data used for analyses in the study entitled "Paired passive acoustic and gillnet sampling reveal the utility of bioacoustics for monitoring fish populations in a turbid estuary"
DOI: 10.6084/m9.figshare.25601394.v1
title: genotypic and phenotypic data for GWAS in autotetraploid potato

description: This work is published in the following article:Sharma, S.K., McLean, K., Hedley, P.E., Dale, F., Daniels, S., Bryan, G.J. 2024. Genotyping-by-sequencing Targets Genic Regions and Improves Resolution of Genome-wide Association Studies in Autotetraploid Potato. Theoretical and Applied Genetics. Abstract: This study deploys recent advancements in polyploid analytical approaches to perform complex trait analyses in cultivated tetraploid potato. The study employs a ‘fixed’ SNP Infinium array platform and a ‘flexible and open’ genome complexity reduction-based sequencing method (GBS, genotyping-by-sequencing) to perform genome-wide association studies (GWAS) for several key potato traits including the assessment of population structure and linkage disequilibrium (LD) in the studied population. GBS SNPs discovered here were largely confined (~90%) to genic or gene-associated regions of the genome demonstrating the utility of using a methylation sensitive restriction enzyme (<i>Pst</i>I) for library construction. As compared to Infinium array SNPs, GBS SNPs displayed enhanced effectiveness in estimating LD decay rates and discriminating population subgroups. GWAS using a combined set of 30,363 SNPs identified 189 unique QTL marker-trait associations (QTL-MTAs) covering all studied traits. The majority of the QTL-MTAs were from GBS SNPs potentially illustrating the effectiveness of marker-dense <i>de novo</i> genotyping platforms in overcoming ascertainment bias and providing a more accurate correction for different levels of relatedness in GWAS models. GWAS also detected QTL ‘hotspots’ for several traits at previously known as well as newly identified genomic locations. Due to the current study exploiting genome-wide genotyping and <i>de novo</i> SNP discovery simultaneously on a large tetraploid panel representing a greater diversity of the cultivated potato gene pool, the reported sequence-tagged MTAs are likely to have higher transferability across a wider range of potato germplasm and increased utility for expediting genomics-assisted breeding for the several complex traits studied.
DOI: 10.6084/m9.figshare.27935376.v1
title: MERSCOPE data

description: MERSCOPE data used for Panpipes github action
DOI: 10.6084/m9.figshare.28120874.v3
title: China's City Level Expressions of Public Views Indices on Climate Risk and Government Response

description: A dataset on China's climate risk public opinion and government response indices in city Level, 2011-2023 (excluding data from Hong Kong, Macao, and Taiwan).
DOI: 10.6084/m9.figshare.28378190.v1
title: GBD anxiety disorders

description: Data for Anxiety Disorders
DOI: 10.6084/m9.figshare.28615031.v1
title: Yoruba-Igbo parallel Corpus

description: This is a Parallel corpus consisting of Yoruba and Igbo languages
DOI: 10.6084/m9.figshare.7707119.v1
title: Audio recordings of predator presentations

description: Set of 31 audio recordings: vocal reaction of titi monkeys when presented to predator models (tayra, oncilla and caracara).<br>Note that these recordings are those collected by Berthet. Recordings of Cäsar must be requested directly to the author.<br><br>Experimental paradigm: the model is placed on the ground or in the canopy, the records begins right after the first subject spots the predator. We only analysed the first ten calls.<br><br><br>Name of recordings: YYYYMMDD-HHhMM-group-condition<br>Some sequences have a label "part1", because they were cut. The first ten calls are on the recording. <br><br><br>
DOI: 10.17632/6p5vg8txn2
title: Mastitis Database

description: Mastitis Database
DOI: 10.17632/k387xkyc5f
title: Hznu Facade Dataset

description: We used the Canon M50 Mark II camera, along with the DJI Mavic Air and DJI Mavic 3 drones, to capture high-resolution facade images across various urban regions of Hangzhou, China. The dataset contains a total of 624 high-resolution facade images. The average resolution of all images is 4056 × 3856.
The "original" folder contains the original dataset, which includes facade images, annotated JSON files, and the homography matrices obtained through the perspective correction algorithm. The "perspective correction" folder contains the dataset after perspective correction, including the corrected facade images and the corresponding annotated JSON files, which represent sematic segmentation.Facade images are named in increasing order, with those starting with "c" representing camera-captured facade images, and those starting with "d" representing drone-captured facade images.
DOI: 10.17632/pxvd47zxtz
title: The magneto-microbiome: a dataset of the metagenomic distribution of magnetotactic bacteria

description: This dataset contains counts of reads from the NCBI Sequence Read Archive (SRA) that have been taxonomically assigned to various magnetotactic bacteria.  Please use these data to identify specific magnetotactic bacteria, environments, or hosts for future study.
DOI: 10.17632/rvtj3bx536
title: UDataSet

description: This dataset is a compilation of UDS data collected from the Children's Hospital Affiliated to Soochow University and the Children's Hospital Affiliated to Fudan University in Shanghai. There are 2820 samples in total, of which the first 1308 samples are labeled. The size of each sample is a sequence of 2000*1. The three csv files are the data of three pressure curves, and the two xlsx files are the labels of two disease subtypes.
DOI: 10.17632/tvmfbkkmnj
title: Analisis Teknik Hack Akun TikTok Menggunakan Aplikasi: Studi Kasus di Kalangan Remaja

description: Penelitian ini menganalisis teknik dan cara yang digunakan untuk hack akun TikTok menggunakan aplikasi hack TikTok yang sangat bagus dan ampuh yang didownload dari website ILMUKAMPUS.COM . Serta mengidentifikasi faktor yang memengaruhi keterlibatan remaja dalam aktivitas ini. Metode seperti phishing, keylogger, dan aplikasi pihak ketiga merupakan teknik yang paling umum digunakan. Temuan ini menyoroti pentingnya literasi digital. Data yang disertakan meliputi artikel dan transkrip wawancara.

Media sosial telah menjadi bagian integral dari kehidupan remaja di seluruh dunia, termasuk di Indonesia. TikTok, sebagai salah satu platform terbesar, sering kali menjadi target aktivitas peretasan akun Tiktok orang lain, teman, pasangan atau pacar. Penelitian ini mengkaji berbagai teknik yang digunakan untuk meretas akun TikTok dan faktor-faktor yang memengaruhi keterlibatan remaja dalam aktivitas tersebut.

Hasil Penelitian
Teknik Peretasan dan Cara Hack TikTok yang Diidentifikasi:
Phishing: Membuat halaman palsu yang menyerupai login TikTok.
Keylogger: Menggunakan perangkat lunak untuk merekam aktivitas keyboard korban.
Aplikasi Hack TikTok: Menggunakan aplikasi hack TikTok lewat hp android, iphone, serta laptop, pc atau komputer untuk mengambil alih akun.

Faktor Motivasi Hack Akun TikTok
Rasa Ingin Tahu: Banyak remaja mencoba aktivitas ini untuk tujuan eksplorasi.
Tekanan Sosial: Pengaruh dari teman sebaya atau komunitas daring.

Dampak Aktivitas Hack TikTok
Korban: Kehilangan akses ke akun, dan trauma psikologis.

Rekomendasi
Peningkatan Literasi Digital: Mengintegrasikan program literasi digital di sekolah dan komunitas.
Penguatan Regulasi: Pemerintah dan platform media sosial perlu meningkatkan pengawasan terhadap aplikasi hack TikTok.

Kesimpulan
Penelitian ini mengungkapkan bahwa aktivitas peretasan akun TikTok di kalangan remaja disebabkan oleh kombinasi faktor teknis dan sosial.
DOI: 10.6084/m9.figshare.14509521.v1
title: Data on the paper titled that “Soil nitrogen transformations respond diversely to multiple levels of nitrogen addition in a Tibetan alpine steppe”

description: The dataset provides soil nitrogen (N) transformation rates, physiochemical and microbial properties along eight levels of N addition gradient in a Tibetan alpine steppe. Soil N transformation rates include gross rates of N mineralization, gross nitrification, and microbial immobilization. Soil physiochemical properties include soil pH, content of dissolved organic N, dissolved organic carbon and NH<sub>4</sub><sup>+</sup>-N. Soil microbial properties include microbial biomass carbon content, β-1,4-N-acetylglucosaminidase and leucine aminopeptidase activities, the gene abundances of ammonia-oxidizing archaea and bacteria. The dataset is obtained with soil samples taken in July-2019.<br><br>
DOI: 10.6084/m9.figshare.20291628.v2
title: MAIN DATASET: Seurat CloneTracer Cohort

description: <strong>seurat v3 object</strong> <br> <strong>ASSAYS:</strong> AB: Antibody expression data RNA: mRNA expression data <br> <strong>DIMENSIONALITY REDUCTION</strong> Projected: Data was projected on the reference dataset MOFAUMAP coordinates (Triana et al., 2021) scanorama: Data was integrated with Scanorama, using the cohort as Batch key umap: umap computed from Scanorama components <br> <strong>METADATA</strong> patient: Patient cohort: Cohort day: Day of sampling (relevant for Cohort B only) ct: Projected cell type (Triana et al., 2021) ct_simple: Simplified projected celltype pseudo_myel: Projected myeloid pseudotime (Triana et al., 2021) projection_score: Score assessing the quality of projection (Triana et al 2021) id: Unsupervised clustering result leukemia_prob: CloneTracer leukemia probability status: Binarized status (healthy, leukemic, unsure) <br>
DOI: 10.6084/m9.figshare.21688673.v1
title: UXOTi_NPA_1_class dataset

description: Evaluation dataset <strong>UXOTi_NPA</strong>–an abbreviation that stands for UneXploded Ordnance Thermal images provided by Norwegian People's Aid–for this research was constructed as follows. The raw data was provided by the humanitarian organization Norwegian People’s Aid which collected videos about unexploded ordnances during a project in Bosnia and Herzegovina in 2019. Thermal imaging sensor was mounted on the UAV that surveyed the area at a height of 3 meters. A very small Ground Sampling Distance (GSD) was achieved with such a configuration. These videos were acquired by the thermal imager Zenmuse XT with a dimension of 720x480 pixels at 30 Hz frame rate. Pixel pitch was 17 μm, sensitivity (NEdT) &lt;50mK at focal length f/1.0, and a field of view was 69°x56°. Videos were stored in mp4 format. Image sequences were grabbed from the full videos by using VirtualDub software. These clips were about 25 seconds long and show the UAV's flight over the targets. We annotated videos semi-automatically by using Computer Vision Annotation Tool (CVAT). Positions of objects’ annotations were manually corrected after every 5 to 6 frames. The evaluation dataset consists of 808 thermal images of dimensions of 720x480 pixels extracted from the above-described video clips, whenever at least one target (UXO) was present in the image. The number of objects per image varied between one to three.
DOI: 10.6084/m9.figshare.23607630.v1
title: patient16.rar

description: A Patient with fundus images that taken by Ret-cam.
DOI: 10.6084/m9.figshare.25125773.v1
title: <b>Dental disease in companion rabbits under UK primary veterinary care: frequency and risk factors</b>

description: Objectives Some prior evidence has suggested rabbits with lop ear and brachycephalic skull conformations have higher dental disease risk. This retrospective cohort study reports the frequency and conformational risk factors for primary-care veterinary diagnosis with dental disease in companion rabbits in the UK. MethodsAnonymised VetCompass clinical records were manually reviewed to confirm dental disease cases. Risk factor analysis used multivariable binary logistic regression modelling. Results From 161,979 rabbits under primary veterinary care in 2019, the one-year period prevalence of dental disease overall was 15.36% (95% confidence interval [CI]: 14.78-15.96). Prevalence of dental disease affecting incisors was 3.14% (95% CI: 2.87-3.44) and cheek teeth was 13.72% (95% CI: 13.17-14.29). Neither lop ear conformation or brachycephalic skull conformation were statistically significantly associated with the odds of dental disease . Male rabbits had 1.23 times higher odds of dental disease than females (95% CI: 1.12-1.35). Dental disease odds increased as age increased, and decreased as bodyweight increased. Clinical SignificanceHigh overall prevalence highlights dental disease as a major welfare concern for all companion rabbits, regardless of conformation. This information can be used to encourage regular routine dental assessment of rabbits of all conformations to promote earlier diagnosis, paying particular attention to males, older rabbits or those with low bodyweight. <br>
DOI: 10.6084/m9.figshare.29147693.v1
title: yellow river delta data

description: a research on the microbial distribution at Yellow River Delta
DOI: 10.6084/m9.figshare.14132522.v1
title: Cyanobiont genetic diversity and host specificity of cyanobiont-bearing dinoflagellate Ornithocercus in temperate coastal waters

description: Among diverse symbiotic relationships between two organisms, the ecophysiological features of, in particular, the cyanobacterial symbiont (cyanobiont)-dinoflagellate host consortia at the level of a unicellular organism remain poorly understood. We studied the genetic diversity, host or cyanobiont specificity, and cyanobionts seasonality of the dinoflagellate <i>Ornithocercus </i>cyanobionts.
DOI: 10.6084/m9.figshare.24807804.v3
title: Longitudinal analyses of infants’ microbiome and metabolome reveal microbes and metabolites with seemingly coordinated dynamics

description: R-readable microbiome, metabolome, and their taxonomy data sets.