cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5c824r3d
title: MassIVE MSV000093621 - Development and Application of a Collision Cross Section Database for the Detection of Quaternary Ammonium Compounds and Their Phase I Hepatic Metabolites in Humans
title: LC-IM-MS/MS analysis of human liver microsome (HLM; +/- NADPH) quaternary ammonium compound (QAC) incubation extracts.
DOI: 10.34740/kaggle/dsv/7164257
title: Full TMDB Movies Dataset 2023 (930K Movies)
DOI: 10.5281/zenodo.10327409
title: Continuous snow temperature profiles from the Snow Ice Mass Balance Apparatus (SIMBA) (level 1 Raw), Study of Precipitation, the Lower Atmosphere and Surface for Hydrometeorology (SPLASH), November 2022-June 2023

description: Raw (Level 1) measurements from the Snow Ice Mass Balance Apparatus (SIMBA) deployed at the Avery Picnic site (~ 38°58.345' N, 106°59.811' W) during the Study of Precipitation, the Lower Atmosphere, and Surface for Hydrometeorology (SPLASH) campaign near Gothic, Colorado, from November 2021 through June 2023. The SIMBA, originally designed for observing the mass balance of sea ice, is comprised of a thermistor chain with 2 cm spacing (Jackson et al., 2013). This system was configured for terrestrial snowpack by the manufacturer, SAMS Enterprise, to the specifications for SPLASH. The chain was installed suspended from a tripod and fixed to a rigid plastic bar near in time to the onset of snowpack in November 2022. The lowest 10 cm of the chain were buried within the soil. The top of the chain reached approximately 180 cm above the soil surface and snow was permitted to accumulate around the chain throughout the winter of 2022-2023. In the files, negative values of the "height" vector are below the soil surface and positive levels are above, which may be either snow or air depending on the snow depth. The system also uses a low-power heating cycle to measure thermistor's temperature response time for aiding in determining material interfaces: see Jackson et al. (2013) for details. 
There are several cautions to be aware of when using these data. The data has been ingested into daily netCDF and metadata (in attributes) have been provided but no quality control has been carried out on this raw version of the data set. From 1 November through 22 December 2022, the sensor obtained profiles every 10 min after which corruption of the configuration file reverted the profiles to every 6 hours (0, 6, 12, and 18 UTC). After 1 January a problem in the firmware caused the system to lose connection to the time-synching GPS network and therefore the clock drifted from January through June 2023 (the maximum potential time stamping error is likely < 81 sec). Finally, from 23 March through 4 April 2023, the depth of the snow at the location of the sensor was deeper than 180 cm and thus measurements in the upper part of the snowpack were not observed then.
Jackson, K., J. Wilkinson, T. Maksym, D. Meldrum, J. Beckers, C. Haas, and D. Mackenzie (2013) A novel and low-cost sea ice mass balance buoy. Journal of Atmosphere and Oceanic Technology, 30(11), 2676-2688, https://doi.org/10.1175/JTECH-D-13-00058.1.
DOI: 10.5519/qd.95wz23z7
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (370777 records)
DOI: 10.5519/qd.jy7dwp8b
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (370777 records)
DOI: 10.5519/qd.y57yelwp
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (374842 records)
DOI: 10.6084/m9.figshare.24715913
title: Development of an integrated assessment framework for agroforestry technologies: assessing sustainability, barriers, and impacts in the semi-arid region of Dodoma, Tanzania

description: Land degradation continues to be a major concern for agriculture in developing countries, including Tanzania. Agroforestry is one solution that benefits food production and reduces land degradation. However, various challenges hinder its widespread adoption. This study uses an integrated assessment framework, combining MESMIS (an indicator-based sustainability assessment framework) and ScalA (a scaling-up assessment tool), to evaluate sustainability and constraints to the widespread implementation of agroforestry in semi-arid Tanzania. The main goals are to: 1) identify existing agroforestry technologies adopted by smallholder farmers; 2) evaluate farmers’ perception of sustainability regarding each technology's environmental, economic, and social impact; and 3) identify constraints related to the widespread adoption. Results show that farmers consider the following four technologies as the most sustainable: (i) tied ridge + tree intercropping; (ii) contour planting + tree intercropping; (iii) Chololo pits + tree intercropping; and (iv) tree intercropping alone. The findings indicate that, although farmers perceive the technologies positively, adoption is also influenced by local climate, socio-economic status, and institutional factors. The study highlights that a positive perception alone cannot ensure widespread adoption, emphasizing the importance of considering contextual factors. Further testing and application of the proposed framework in similar and comparative settings is encouraged as it provides valuable guidance when evaluating different agroecosystems holistically.
DOI: 10.6084/m9.figshare.24715913.v1
title: Development of an integrated assessment framework for agroforestry technologies: assessing sustainability, barriers, and impacts in the semi-arid region of Dodoma, Tanzania

description: Land degradation continues to be a major concern for agriculture in developing countries, including Tanzania. Agroforestry is one solution that benefits food production and reduces land degradation. However, various challenges hinder its widespread adoption. This study uses an integrated assessment framework, combining MESMIS (an indicator-based sustainability assessment framework) and ScalA (a scaling-up assessment tool), to evaluate sustainability and constraints to the widespread implementation of agroforestry in semi-arid Tanzania. The main goals are to: 1) identify existing agroforestry technologies adopted by smallholder farmers; 2) evaluate farmers’ perception of sustainability regarding each technology's environmental, economic, and social impact; and 3) identify constraints related to the widespread adoption. Results show that farmers consider the following four technologies as the most sustainable: (i) tied ridge + tree intercropping; (ii) contour planting + tree intercropping; (iii) Chololo pits + tree intercropping; and (iv) tree intercropping alone. The findings indicate that, although farmers perceive the technologies positively, adoption is also influenced by local climate, socio-economic status, and institutional factors. The study highlights that a positive perception alone cannot ensure widespread adoption, emphasizing the importance of considering contextual factors. Further testing and application of the proposed framework in similar and comparative settings is encouraged as it provides valuable guidance when evaluating different agroecosystems holistically.
DOI: 10.6084/m9.figshare.23690073
title: When local customs meet the market: an analysis of coffee value chain in Tebat Benawa customary community, Indonesia

description: Using Tebat Benawa customary community in Indonesia as a case study, this paper aims to understand how non-specialty Robusta coffee value chain operates at the farmer-trader level and see if and how customary setting influences the relationships between actors. We employed a mixed-methods research design combining qualitative and quantitative analyses of primary and secondary data collected through group discussions, interviews, and participant observations. The social network analysis results showed that customary settings represented by clan-based familial relationships influenced farmer-trader relations, but it was not dominating. Coffee prices seem to be the major driver of the farmer-trader relations in Tebat Benawa. We argue that the relatively early stage of customary community consolidation indicates a weak social capital that makes economic rationale dominate farmers’ business decisions. This study contributes to the limited literature on the contemporary smallholder value chain of non-specialty Robusta coffee.
DOI: 10.5281/zenodo.10327718
title: Exploring the Analytics Readiness

description: Data on Exploring the Analytics Readiness
DOI: 10.5281/zenodo.10327719
title: Exploring the Analytics Readiness

description: Data on Exploring the Analytics Readiness
DOI: 10.6084/m9.figshare.23689194
title: ELDORA Machine Learning Quality Control Dataset

description: The repository contains data from the airborne radar quality control process for the ELDORA airborne radar discussed in the manuscript "Airborne Radar Quality Control with Machine Learning" by Alexander J. DesRosiers and Michael M. Bell. The main data files are the '.h5' files which should be stored in a directory titled 'h5_files' locally to try and run the code. The 'make_rf_model.py' script uses the h5 data to train and evaluate a random forest model for radar quality control. The 'utils.py' script contains helper scripts needed to mine data, train, and evaluate models with this methodology which Bruno Melli helped originally develop. The 'rf_ophelia_raw_cfrad_clean.py' script can be used to clean a sample cfradial file included which should be stored in a 'sample_cfrad' directory locally. The model itself is stored in a pickle file titled 'rf_Eldo_model.pkl'.
DOI: 10.6084/m9.figshare.23689194.v1
title: ELDORA Machine Learning Quality Control Dataset

description: The repository contains data from the airborne radar quality control process for the ELDORA airborne radar discussed in the manuscript "Airborne Radar Quality Control with Machine Learning" by Alexander J. DesRosiers and Michael M. Bell. The main data files are the '.h5' files which should be stored in a directory titled 'h5_files' locally to try and run the code. The 'make_rf_model.py' script uses the h5 data to train and evaluate a random forest model for radar quality control. The 'utils.py' script contains helper scripts needed to mine data, train, and evaluate models with this methodology which Bruno Melli helped originally develop. The 'rf_ophelia_raw_cfrad_clean.py' script can be used to clean a sample cfradial file included which should be stored in a 'sample_cfrad' directory locally. The model itself is stored in a pickle file titled 'rf_Eldo_model.pkl'.
DOI: 10.5281/zenodo.10328303
title: Open Dutch Wordnet v1.3
title: Open Nederlands WordNet

description: Dutch version of WordNet
More information about the project: http://www.cltl.nl/projects/current-projects/opensourcewordnet/
Authors and main associated publication:
@InProceedings{Postma:Miltenburg:Segers:Schoen:Vossen:2016, author = "Marten Postma and Emiel van Miltenburg and Roxane Segers and Anneleen Schoen and Piek Vossen", title = "Open {Dutch} {WordNet}", booktitle = "Proceedings of the Eight Global Wordnet Conference", year = 2016, address = "Bucharest, Romania", }
DOI: 10.5281/zenodo.10328304
title: Open Dutch Wordnet v1.3
title: Open Nederlands WordNet

description: Dutch version of WordNet
More information about the project: http://www.cltl.nl/projects/current-projects/opensourcewordnet/
Authors and main associated publication:
@InProceedings{Postma:Miltenburg:Segers:Schoen:Vossen:2016, author = "Marten Postma and Emiel van Miltenburg and Roxane Segers and Anneleen Schoen and Piek Vossen", title = "Open {Dutch} {WordNet}", booktitle = "Proceedings of the Eight Global Wordnet Conference", year = 2016, address = "Bucharest, Romania", }
DOI: 10.34740/kaggle/dsv/7164399
title: Daily Public Opinion on Israel-Palestine War
DOI: 10.5281/zenodo.10307529
title: VIC-Res Upper Mekong -- 2005-2020 -- Vu et al., 2023, Hydrology and Earth System Sciences

description: This data repository holds VIC-Res model input / output data for the paper "Vu, D.T., Dang, T. D., Pianosi, F., & Galelli, S. Calibrating macroscale hydrological models in poorly gauged and heavily regulated basins. Hydrol. Earth Syst. Sci., 27, 3485–3504, 2023"
The model can be used to simulate hydrological processes and streamflow routing in the Upper Mekong River basin for the period 2005-2020. The streamflow routing scheme can be run with and without water reservoirs.
DOI: 10.5281/zenodo.10307530
title: VIC-Res Upper Mekong -- 2005-2020 -- Vu et al., 2023, Hydrology and Earth System Sciences

description: This data repository holds VIC-Res model input / output data for the paper "Vu, D.T., Dang, T. D., Pianosi, F., & Galelli, S. Calibrating macroscale hydrological models in poorly gauged and heavily regulated basins. Hydrol. Earth Syst. Sci., 27, 3485–3504, 2023"
The model can be used to simulate hydrological processes and streamflow routing in the Upper Mekong River basin for the period 2005-2020. The streamflow routing scheme can be run with and without water reservoirs.
DOI: 10.5517/ccdc.csd.cc2f68hf
title: CCDC 2240354: Experimental Crystal Structure Determination

description: Related Article: Vikas Kumar Dakua, Anupam Datta, Debadrita Roy, Debabrata Biswas, Biswajit Ghosh, Kanak Roy, Satadal Paul, Purak Das, Subhra Mishra, Biswajit Sinha, Mousumi Das, Sanjoy Barman, Mahendra Nath Roy|2023|Results in Chemistry|6|101050|doi:10.1016/j.rechem.2023.101050
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5519/qd.yibk8y2v
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (36 records)
DOI: 10.5519/qd.trr9fxfz
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (948 records)
DOI: 10.34740/kaggle/dsv/7164615
title: BBC News
DOI: 10.34740/kaggle/dsv/7164616
title: Youtube Trending Video - Taiwan & Hong Kong
DOI: 10.6084/m9.figshare.24769677.v2
title: Data and code for Figures 3 and 4

description: Unzip each zip file and refer to the README.md file in each subdirectory for further instructions.
DOI: 10.6084/m9.figshare.24769677.v3
title: Data and code<i> for </i><i>Evolution of compound eye morphology underlies differences in vision between closely related </i><i>Drosophila</i><i> species </i>

description: Unzip each zip file and refer to the README.md file in each subdirectory for further instructions.
DOI: 10.5519/qd.uld54ij6
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.34740/kaggle/dsv/7164684
title: arXiv Dataset
DOI: 10.6084/m9.figshare.12593184.v1
title: Additional file 3 of Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples

description: Additional file 3: Table S7. Genome sequences acknowledged.
DOI: 10.6084/m9.figshare.19933109.v1
title: Additional file 3 of NT-seq: a chemical-based sequencing method for genomic methylome profiling

description: Additional file 3: Table S2. Nitrite treatment condition optimization by qPCR.
DOI: 10.6084/m9.figshare.19933115.v1
title: Additional file 5 of NT-seq: a chemical-based sequencing method for genomic methylome profiling

description: Additional file 5: Table S4. PCR duplication rate of unenriched and 6mA DIP enriched library.
DOI: 10.6084/m9.figshare.19932993
title: Additional file 5 of Key gene network related to primary ciliary dyskinesia in hippocampus of patients with Alzheimer’s disease revealed by weighted gene co-expression network analysis

description: Additional file 5: Table S1. Sequencing of hippocampal data in dataset GSE48350.
DOI: 10.6084/m9.figshare.19932999.v1
title: Additional file 7 of Key gene network related to primary ciliary dyskinesia in hippocampus of patients with Alzheimer’s disease revealed by weighted gene co-expression network analysis

description: Additional file 7: Table S3. GO and KEGG analysis of differentially expressed genes in Table S2.
DOI: 10.6084/m9.figshare.12592922.v1
title: Additional file 12 of Identification of vital candidate microRNA/mRNA pairs regulating ovule development using high-throughput sequencing in hazel

description: Additional file 12 Table S11 Primers for qRT-PCR analysis
DOI: 10.6084/m9.figshare.19933112.v1
title: Additional file 4 of NT-seq: a chemical-based sequencing method for genomic methylome profiling

description: Additional file 4: Table S3. 5mC motif detected from bisulfite sequencing in eight bacterial species in microbial community standard.
DOI: 10.6084/m9.figshare.19933118.v1
title: Additional file 6 of NT-seq: a chemical-based sequencing method for genomic methylome profiling

description: Additional file 6: Table S5. Oligos and primers used in this study.
DOI: 10.6084/m9.figshare.19933124.v1
title: Additional file 7 of NT-seq: a chemical-based sequencing method for genomic methylome profiling

description: Additional file 7: Table S6. Reference genome used in this study.
DOI: 10.6084/m9.figshare.19933106.v1
title: Additional file 2 of NT-seq: a chemical-based sequencing method for genomic methylome profiling

description: Additional file 2: Table S1. Comparison between protected and unprotected oligo under the same nitrite treatment.
DOI: 10.25387/g3.12593627.v1
title: Supplemental Material for Yin et al., 2020

description: File S1 contains two sets of flow cytometry histograms of octoploid <i>B. napus</i> (Y3380 plants and Y3560
plants). File S2 contains two sets of flow cytometry histograms of tetraploid <i>B. napus </i>(ZS11 and P3-2). File S3 contains
two sets of flow cytometry histograms of the self-pollinated individuals
derived from octoploid <i>B. napus</i>. All these
flow cytometry fluorescence histograms were dragged out directly from the
AccuriC software. Supplemental Figures contains Figures S1-S12. Table S1
contains the fluorescence intensity values of the mitotic G1 phase of octoploid
and tetraploid <i>B. napus</i>. Table S2
contains phenotypic data of octoploid and tetraploid <i>B. napus</i>. Table S3 contains the fluorescence intensity values of the
mitotic G1 phase of self-pollinated individuals derived from octoploid <i>B. napus</i>.
DOI: 10.6084/m9.figshare.16786909
title: Additional file 1 of Beware of pharyngeal Fusobacterium nucleatum in COVID-19

description: Additional file 1.
DOI: 10.6084/m9.figshare.19933115
title: Additional file 5 of NT-seq: a chemical-based sequencing method for genomic methylome profiling

description: Additional file 5: Table S4. PCR duplication rate of unenriched and 6mA DIP enriched library.
DOI: 10.6084/m9.figshare.19933124
title: Additional file 7 of NT-seq: a chemical-based sequencing method for genomic methylome profiling

description: Additional file 7: Table S6. Reference genome used in this study.
DOI: 10.6084/m9.figshare.16786909.v1
title: Additional file 1 of Beware of pharyngeal Fusobacterium nucleatum in COVID-19

description: Additional file 1.
DOI: 10.6084/m9.figshare.13117973.v1
title: miR-122 regulates the JAK-STAT signalling pathway by down-regulating <i>EPO</i> in the mammary gland during <i>Streptococcus agalactiae</i>-induced mastitis

description: MicroRNA (miRNA) are single-stranded non-coding RNA of approximately 22 nucleotides estimated to regulate 60% of human and animal genes some of which are associated with cell differentiation, signal transduction and immune processes. <i>Streptococcus agalactiae</i> (<i>S. agalactiae</i>)-induced bovine mastitis is associated with up-regulation of miR-122 and down-regulation of erythropoietin (<i>EPO</i>) abundance in mammary gland tissue. TargetScan analysis revealed that <i>EPO</i> is a predicted target gene of miR-122 and this regulatory relationship was verified by dual-luciferase reporter assay. Overexpression of miR-122 in primary bovine mammary cells led to down-regulation of <i>EPO</i> and also the JAK-STAT signalling pathway genes <i>EPOR</i>, <i>JAK2</i>, <i>STAT5A</i> and <i>STAT5B</i>. Accordingly, the mRNA abundance of <i>BCL-2</i>, a downstream gene in the JAK-STAT signalling pathway was significantly down-regulated. Under conditions of miR-122 inhibition, <i>EPO</i>, <i>EPOR</i>, <i>JAK2</i>, <i>STAT5A</i> and <i>STAT5B</i> were up-regulated. These results demonstrated that, through its action on <i>EPO</i>, miR-122 may play an important role in <i>S. agalactiae</i>-induced mastitis by regulating the JAK-STAT signalling pathway.HighlightsUnderstanding the relationship among miR-122, <i>EPO</i> and the JAK-STAT pathway would be helpful in developing new strategies for controlling mastitis.
 Understanding the relationship among miR-122, <i>EPO</i> and the JAK-STAT pathway would be helpful in developing new strategies for controlling mastitis.
DOI: 10.5519/qd.k1i1zgpb
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5600 records)
DOI: 10.6084/m9.figshare.25112339.v3
title: ChirakkalEtAl_supplementaryinformation

description: See supplementary information which contains complete <i>n</i>-alkanes and PAHs distribution and concentration data.<br>Authors: Aljasil Chirakkal, Calin Constantin Stiendal, Jago Jonathan Birk, Redzhep Kurbanov, David K Wright
DOI: 10.6084/m9.figshare.13643144
title: Supplementary files for "A Four Gene-based Immune Signature Predicts Dedifferentiation and Immune Exhaustion in Dedifferentiated Thyroid Cancer."

description: Supplementary files for "A Four Gene-based Immune Signature Predicts Dedifferentiation and Immune Exhaustion in Dedifferentiated Thyroid Cancer."
DOI: 10.6084/m9.figshare.19410318.v2
title: P-hydroxy benzaldehyde facilitates reprogramming of reactive astrocytes into neurons via endogenous transcriptional regulation

description: Cerebral ischemia leads to linguistic and motor dysfunction, as the death of neurons in ischemic core is permanent and non-renewable. An innovative avenue is to induce and/or facilitate reprogramming of adjacent astrocytes into neurons to replace the lost neurons and re-establish brain homeostasis. This study aimed to investigate whether the p-hydroxy benzaldehyde (p-HBA), a phenolic compound isolated from <i>Gastrodia elata</i> Blume, could facilitate the reprogramming of oxygen-glucose deprivation/reperfusion (OGD/R)-damaged astrocytes into neurons. The primary parenchymal astrocytes of rat were exposure to OGD and reperfusion with define culture medium. Cells were then incubated with different concentration of p-HBA (1, 10, 100, 400 μM) and collected at desired time point for reprogramming process analysis. OGD/R could elicit endogenous neurogenic program in primary parenchymal astrocytes of rat under define culture condition, and these so-called reactive astrocytes could be reprogrammed into neurons. However, the neonatal neurons produced by this endogenous procedure could not develop into mature neurons, and the conversion rate was only 1.9%. Treatment of these reactive astrocytes with p-HBA could successfully promote the conversion rate to 6.1%, and the neonatal neurons could develop into mature neurons within 14 days. Further analysis showed that p-HBA down-regulated the Notch signal component genes Dll1, Hes1 and SOX2, while the transcription factor NeuroD1 was up-regulated. The results of this study demonstrated that p-HBA facilitated the astrocyte-to-neuron conversion. This chemical reprogramming was mediated by inhibition of Notch1 signaling pathway and transcriptional activation of NeuroD1.
DOI: 10.6084/m9.figshare.25145519
title: Bacterial zOTUtable for combined application of protists and Bacillus experiment

description: Bacterial zOTUtable for combined application of protists and Bacillus experiment
DOI: 10.6084/m9.figshare.25145519.v1
title: Bacterial zOTUtable for combined application of protists and Bacillus experiment

description: Bacterial zOTUtable for combined application of protists and Bacillus experiment