cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.bj7n9/4
title: Photographs of Northern California genus Thomomys subgenus Megascapheus pocket gopher lateral crania for 2D Geometric Morphometrics

description: Zipped folder containing photographs of lateral crania specimens of genus Thomomys subgenus Megascapheus gophers from our Northern California study region housed in the UC Berkeley Museum of Vertebrate Zoology's (MVZ) mammal collections. Abbreviated taxonomic identification and the MVZ catalog numbers are given in the filenames of each specimen photo. Photos with a number at the end of the filename are photos taken of the same specimen at different times during the digitization process to assess operator error. Photos with "copy" at the end of the filename are photo files that were digitally duplicated to assess landmarking error specifically. Combine with the subgenus Thomomys file of the same view before proceeding with analyses.
DOI: 10.5061/dryad.bk5s3/1
title: Cane toad dispersal rate

description: Dispersal data of cane toads radio-tracked in Australia. Toads are grouped in four categories; core (Northern QLD) toads tracked in 1992-1993 and front (NT) toads tracked in 2006, while resident and translocated (Northern NSW) toads were tracked in 2015-2016. Toads in the resident and translocated categories are additionally grouped by transport stress treatment (low or high), collection site and release site. Three dispersal-relevant parameters are calculated for each toad: (1) mean distance per move (cumulative distances travelled divided by the number of times a toad changed diurnal shelter site); (2) mean displacement per day (total linear distance between the release point and final position divided by the number of days; such that a toad that returned to its initial release point by the end of the five-day period would receive a score of zero); and (3) daily rate of changes in shelter-sites (the number of shelter sites divided by number of observations).
DOI: 10.5061/dryad.c9j53/1
title: SNP data Leucorrhinia

description: This excel file contain four sets of partitioned SNP data for the dragonflies in the study. The data in this excel file is formated in genpop format and each tab starting with "SNPs…" can be exported to a text file. The last tab contain population information for each individual.
DOI: 10.5061/dryad.cm28r/1
title: Phylips&trees

description: Includes the 50% missing data alignment/resulting tree and the 35% missing data (i.e., 65% complete) alignment/resulting tree .
DOI: 10.5061/dryad.d45gs/1
title: Obstructive Sleep Apnea Prediction Data

description: The database consists of two full datasets. The first dataset is the collection of 20 records gathered from 14 OSA patients as part of the Apnea-ECG Database.The second dataset consists of 10 records from 10 subjects, who were selected based on the quality of the signals, from St. Vincent’s University Hospital/ University College Dublin (UCD Database) sleep apnea database (http://www.physionet.org/pn3/ucddb/). The OSA annotations are in minute-wise scored offline by experienced sleep physicians using polysomnography (PSG) signals. The PSG signals recorded were EEG, EOG, EMG, ECG, nasal airflow, ribcage movements, abdomen movements, oxygen saturation (finger pulse oximeter), snoring (tracheal microphone), and body position. All subjects have been clinically diagnosed with mild to severe OSA.
DOI: 10.5061/dryad.g0n2d/1
title: Fig 1C
DOI: 10.5061/dryad.gf46s/4
title: Pre T treatment dimorphism

description: Measurements of morphology (body size, bill, and plumage color) taken on male and female birds prior to treatment with testosterone or control implants
DOI: 10.5061/dryad.gf46s/5
title: Mid T treatment molt score

description: Testosterone and control implanted male and female molt scores assessed midway through the experimental phase
DOI: 10.5061/dryad.gf46s/6
title: End T treatment dimorphism

description: Measurements of bill and plumage coloration and body morphology taken at the time of implant removal from testosterone and control treated males and females. This data was used to generate two informative principal components.
DOI: 10.5061/dryad.gf46s/7
title: GnRH challenge

description: Androgen concentrations and other informative factors and covariates used in assessment of the effects of GnRH treatment on male and female red-backed fairy-wrens.
DOI: 10.5061/dryad.hn06n/1
title: Plastomes_alignment

description: Alignment of plastome sequences (.fasta format)
DOI: 10.5061/dryad.hn06n/2
title: Nuclear_alignments_130genes_paralogs_remov_rogue_remov

description: Concatenated alignment (.phy format) of 130 orthologous nuclear genes. Rogue taxa removed.
DOI: 10.5061/dryad.hn06n/3
title: Nuclear gene trees

description: Single .tre file containing all 130 nuclear gene trees inferred using RAxML
DOI: 10.5061/dryad.hn06n/4
title: Nuclear gene trees - reduced_8_taxa

description: Single .tre file containing all 130 nuclear gene trees reduced to 8 major lineages. Inferred using RAxML.
DOI: 10.5061/dryad.hn06n/5
title: Plastome_tree_RAxML_bipartitions.tre

description: Plastome phylogeny (.tre file) inferred using RAxML
DOI: 10.5061/dryad.j17h3/3
title: Exp3_beh

description: This data package contains results published in:Is predictability salient? A study of attentional capture by auditory patterns Rosy Southwell, Anna Baumann, Cecile Gal, Nicolas Barascud, Karl Friston, Maria ChaitPhilosophical Transactions of the Royal Society BExperiment 3 (Behavioural)Folder: Single-trial and summarised behavioural data is included in an Excel workbook (separate sheets for each subject; group summary is right-most sheet). For data analysis and plotting in Matlab, a .mat file of the results is also provided as exp3_datasummary.mat.Scripts for analysing and plotting are included; please run AnalyseResultsPlot.m
DOI: 10.5061/dryad.kb610/1
title: Genotype and Plumage information for NY State Sample Set

description: The data file shows the individual genotype information for mtDNA and the six divergent loci assayed with an RFLP. Plumage information is also given, the scoring criteria can be found in the supplemental experimental proceedures.
DOI: 10.5061/dryad.kb610/2
title: Genotypes from the range wide sample set

description: Genotypes from mtDNA and the six divergent loci assayed using RFLP for samples collected across the range of both taxa. See "Readme" for NY sample set for additional information.
DOI: 10.5061/dryad.kb610/3
title: Plumage Scoring Criteria

description: Adapter from Gill (1980), this table includes the criteria we applied for scoring various plumage characters.
DOI: 10.5061/dryad.kb610/4
title: RFLP Enzyme information

description: SNP information, primer sequences, cut site information, and product size for the six divergent RFLP loci
DOI: 10.5061/dryad.p11s3/1
title: Sway acceleration data at gamete release in 2011
DOI: 10.5061/dryad.p11s3/2
title: Sway acceleration data at gamete release in 2012
DOI: 10.5061/dryad.p2q78/2
title: Hpyori  and CB
DOI: 10.5061/dryad.p61vk/1
title: Map for parent 1 (both sexes)

description: Linkage map for parent 1 (both sexes)
DOI: 10.5061/dryad.p61vk/2
title: Map for parent 2 (both sexes)

description: Linkage map for parent 2 (both sexes)
DOI: 10.5061/dryad.p61vk/3
title: Map for parent 1 (eggs)

description: Linkage map for parent 1 (eggs)
DOI: 10.5061/dryad.p61vk/4
title: Map for parent 1 (sperm)

description: Linkage map for parent 1 (sperm)
DOI: 10.5061/dryad.p61vk/5
title: Map for parent 2 (eggs)

description: Linkage map for parent 2 (eggs)
DOI: 10.5061/dryad.p61vk/6
title: Map for parent 2 (sperm)

description: Linkage map for parent 2 (sperm)
DOI: 10.5061/dryad.p61vk/7
title: RAD demultiplexed filtered data

description: RAD data, demultiplexed and filtered (read 1)
DOI: 10.5061/dryad.q1b6v/2
title: Community _Trait_Data

description: Community composition, environmental, production and trait data for North American and South African sites and species.
DOI: 10.5061/dryad.q1b6v/3
title: Phylogenies

description: Phylogenies of dominant grass species sampled in North America and South Africa.
DOI: 10.5061/dryad.q1b6v/4
title: R_scripts

description: R scripts written to conduct all analyses.
DOI: 10.5061/dryad.qc90d/1
title: Temporal changes in plant cover, functional composition and diversity.

description: This file contains all the data used in the different statistical analyses of this study in order to answer the following questions: : (i) how sensitive are Mediterranean shrubland communities to inter-annual variability in climate?; (ii) are communities with higher functional diversity more stable against climatic fluctuations?; and (iii) are shrubland communities growing on poorer soils more stable over time than those located on resource-richer soils?
DOI: 10.5061/dryad.rc279/3
title: Plot info

description: We report the aboveground carbon stocks (ACS) before (initial ACS acs_i) and after (minimum ACS acsmin) the logging disturbance, for every plot used in this study, in TmFO Amazonian sites (www.tmfo.org).
DOI: 10.5061/dryad.rc279/4
title: Cumulative carbon changes in TmFO plots

description: We here report data from all TmFO Amazonian plots (www.tmfo.org) that have been included in this study. Sites and plots names are given as they are in each site's database. For each plot, t is the time (in years) since the minimum Aboveground Carbon Stock (ACS) was reached during the 5 years following the logging event. Cumulative ACS changes (in MgC/ha) are the total ACS gain (if positive) or loss (if negative) between 0 and t. They are subdivided into 5 changes: (i) cSg is the carbon that was gained from remnant trees (or survivors)' growth; (ii) cSl is the carbon loss from survivors' mortality; (iii) cRr is the sum of carbon gain from yearly recruits; (iv) cRg is the carbon gain from recruits' subsequent growth; (v) cRl is the carbon loss from recruits' mortality.
DOI: 10.5061/dryad.rc279/5
title: Sites description

description: This file describes the main characteristics of TmFO sites used in this study. Information included: (i) sites' coordinates (longitude, latitude), (ii) climatic variables extracted from Worldclim (www.worldclim.org): mean precipitation (mm/yr) and seasonality of precipitation (%); (iii) top soil bulk density (g/cm3) extracted from the Harmonized World Soil Database; (iv) sampling effort : number of plots and plot size (ha); (v) experiment duration : year of first and last census used in this study; (vi) range of species richness (number of species per ha for trees &gt; 20 cm DBH); (vii) percentage of trees (&gt; 20 cm DBH) identified to the species level (det_species) and to the genus level (det_genus).
DOI: 10.5061/dryad.s403s/1
title: Culicoides dispersal data: ELISA OD, SNV and ovalbumin results with associated trap and meterological conditions data

description: Enzyme-linked immunosorbent assay (ELISA) optical density (OD) data, Standard Normal Variate (SNV) transformation of OD data, SNV threshold and classical thresholds used for data analysis, ovalbumin positive/negative results using both SNV and classical thresholds and associated trap and meterological data. One record per well/sample. Sanders et al_2017_Journal of Applied Ecology_data
DOI: 10.5061/dryad.v2p68/2
title: Mammals OTUs

description: FASTA file. Mammalian mt 16S rRNA derived from blood meals of 20.000 haematophagous leeches, sequenced by Illumina HiSeq 2000. OTU clustering with 98% similarity. Cluster size included in FASTA ID of each OTU.
DOI: 10.17632/49c9s99b8k.1
title: Data for: Human capital accumulation in a federation

description: Abstract of associated article: More than half of the variation across U.S. school districts in real K-12 education expenditures per student is due to differences between, rather than within, states. I study the welfare implications of redistribution of education expenditures by the Federal government, using an analytically tractable model of human capital accumulation with heterogeneous agents and endogenous state policies. The net welfare effect of Federal redistribution depends on a trade-off between the positive effect of redistributing resources toward poorer states and the negative effect resulting from misallocation of population across states. Federal redistribution increases welfare in a calibrated version of the model.
DOI: 10.17632/rkm23cmsxt.1
title: Coarse-grain molecular dynamics simulations of lipids in oil-water mixture

description: The aim of the task was to investigate lipid self-assembly when using coarse-grain molecular dynamics simulations. Coarse-grain models reduce the number of degrees of freedom by combining atoms into a coarse-grain bead, thus reducing the number of interactive sites needed to represent a molecule. A decrease in the number of sites results in a decrease in the number of computations leading to a decrease in the time required to model such systems. However, some of the detail is lost from the atomistic representation, but the tradeoff serves the scope of this project. The force field used was the MARTINI force field which combines four heavy atoms and their corresponding hydrogens into a single entity.
DOI: 10.5061/dryad.140p5/1
title: Hawkfish_alldata
DOI: 10.5061/dryad.15998/1
title: Effects of symbiont Hamiltonella defensa on parasitism and multiparasitism of pea aphids (Acyrthosiphon pisum) by Aphidius ervi and Aphelinus abdominalis

description: Data collected in the laboratory on the effects of symbiont Hamiltonella defensa in pea aphids Acyrthosiphon pisum on outcomes of multiparasitism by two parasitoid species (Aphidius ervi and Aphelinus abdominalis). Aphids either possessed the symbiont Hamiltonella defensa (‘Hamiltonella’ in column ‘Symbiont’) or had been cured of their symbiont infection using selective antibiotics (‘None’). In Experiment 1, Aphelinus abdominalis attacked first; in Experiment 2 Aphidius ervi attacked first. In both experiments, aphids were subjected to two parasitism treatments, three days apart (indicated by columns labelled ‘First_treatment’ and ‘Second_treatment’). Each treatment had three possible options: ‘Aphidius’ (parasitism by Aphidius ervi), ‘Aphelinus’ (parasitism by Aphelinus abdominalis) or ‘None’ (aphids not exposed to parasitoids). The headings ‘Aphelinus_mummy’, ‘Aphidius_mummy’, ‘Live’ and ‘Dead’ refer to the possible outcomes for aphids.
DOI: 10.5061/dryad.1fp8g/1
title: short_or_ambiguous_sequences.fasta

description: Sequence for mitogenome fragments of the various Kaloula samples where the sequence was either too short to submit to Genbank (&lt;50 bp) or contained more than 50% ambiguous bases (all positions covered by less than four reads were converted to ambiguous positions). Sequence title corresponds to the Genbank feature table.
DOI: 10.5061/dryad.1fp8g/2
title: short_or_ambiguous_feature_table

description: Genbank feature table (in sequin format) for short or ambiguous sequences in the corresponding fasta file.
DOI: 10.5061/dryad.20h6m/1
title: experiment result

description: Trajectory of infection state during the course of the experiment in the two treatments described in the article
DOI: 10.5061/dryad.2kn1v/10
title: GP_with_grays.txt

description: SNP genotypes for mainland gray foxes and all island fox populations in Genepop input file format.
DOI: 10.5061/dryad.2kn1v/11
title: GP_NO_grays.txt

description: SNP genotypes for all island fox populations (gray foxes NOT included) in Genepop input file format.
DOI: 10.5061/dryad.2kn1v/9
title: final_contigs.fa

description: fasta file of RAD contigs
DOI: 10.5061/dryad.5027d/1
title: Araneae_loci

description: Alignment files for the Araneae dataset (both .fasta & .phy)
DOI: 10.5061/dryad.5027d/2
title: Araneae_trees

description: All tree files for RAxML and ASTRAL analyses of the Araneae datasets
DOI: 10.5061/dryad.5h1q1/1
title: Snail_data_OTUs_4_Dryad
DOI: 10.5061/dryad.5h1q1/2
title: Ruby-PC44_seqs

description: Raw 16S rRNA reads, from Illumina-based sequencing of V4 region using 515F/806R primers
DOI: 10.5061/dryad.5h1q1/3
title: Ruby204D-Int_seqs

description: Raw 16S rRNA reads, from Illumina-based sequencing of V4 region using 515F/806R primers
DOI: 10.5061/dryad.5h1q1/4
title: Ruby-PC41bone_seqs

description: Raw 16S rRNA reads, from Illumina-based sequencing of V4 region using 515F/806R primers
DOI: 10.5061/dryad.5h1q1/5
title: Ruby204C-Fec_seqs

description: Raw 16S rRNA reads, from Illumina-based sequencing of V4 region using 515F/806R primers
DOI: 10.5061/dryad.5h1q1/6
title: Ruby204B-St_seqs

description: Raw 16S rRNA reads, from Illumina-based sequencing of V4 region using 515F/806R primers
DOI: 10.5061/dryad.7120d/1
title: JAV-00902.R3_rawdata

description: Individual ID, Year, Season, Session, Plumage colour variables, Sex, Territorial status, Heterozygosity, Wing chord length, Body mass, Body condition
DOI: 10.5061/dryad.7266m/1
title: RQ miR205 dryad

description: Files include RAW data on qRT-PCR (Ct values and RQ values) and, additionally, basic clinical data are provided (the summary of clinical data is presented in the article).
DOI: 10.5061/dryad.7kb45/1
title: Microsatellite_genotypes_genepop

description: The Microsatellite genotypes used in the genepop format
DOI: 10.5061/dryad.7kb45/2
title: microsatellite_genotypes_structure

description: The micorsatellite genotype input file for STRUCTURE analysis
DOI: 10.5061/dryad.7kb45/3
title: STRUCTURE_config_file

description: The main parameters file required to rerun our STRUCTURE analysis
DOI: 10.5061/dryad.7kb45/4
title: Popgen_analysis_Rscript

description: The R code to rerun our population genetic analysis - the best way to use it is to copy and paste into your R terminal
DOI: 10.5061/dryad.7kb45/5
title: microsatellite_genotypes_VIC_subset

description: Subset of the microsatellite genotypes for just Victorian populations - needed by the R script
DOI: 10.5061/dryad.7kb45/6
title: microsatellite_genotypes_TAS_subset

description: Subset of the microsatellite genotypes for just Tasmanian populations - needed by the R script
DOI: 10.5061/dryad.bj7n9/5
title: Photographs of Northern California Thomomys subgenus Thomomys pocket gopher lateral crania for 2D Geometric Morphometrics

description: Zipped folder containing photographs of lateral crania specimens of genus Thomomys subgenus Thomomys gophers from our Northern California study region housed in the UC Berkeley Museum of Vertebrate Zoology's (MVZ) mammal collections. Abbreviated taxonomic identification and the MVZ catalog numbers are given in the filenames of each specimen photo. Photos with a number at the end of the filename are photos taken of the same specimen at different times during the digitization process to assess operator error. Photos with "copy" at the end of the filename are photo files that were digitally duplicated to assess landmarking error specifically. Combine with the subgenus Megascapheus file of the same view before proceeding with analyses.
DOI: 10.5061/dryad.bj7n9/6
title: Photographs of Northern California genus Thomomys subgenus Megascapheus pocket gopher ventral crania for 2D Geometric Morphometrics

description: Zipped folder containing photographs of ventral crania specimens of genus Thomomys subgenus Megascapheus gophers from our Northern California study region housed in the UC Berkeley Museum of Vertebrate Zoology's (MVZ) mammal collections. Abbreviated taxonomic identification and the MVZ catalog numbers are given in the filenames of each specimen photo. Photos with a number at the end of the filename are photos taken of the same specimen at different times during the digitization process to assess operator error. Photos with "copy" at the end of the filename are photo files that were digitally duplicated to assess landmarking error specifically. Combine with the subgenus Thomomys file of the same view before proceeding with analyses.
DOI: 10.5061/dryad.bj7n9/7
title: Photographs of Northern California Thomomys subgenus Thomomys pocket gopher ventral crania for 2D Geometric Morphometrics

description: Zipped folder containing photographs of ventral crania specimens of genus Thomomys subgenus Thomomys gophers from our Northern California study region housed in the UC Berkeley Museum of Vertebrate Zoology's (MVZ) mammal collections. Abbreviated taxonomic identification and the MVZ catalog numbers are given in the filenames of each specimen photo. Photos with a number at the end of the filename are photos taken of the same specimen at different times during the digitization process to assess operator error. Photos with "copy" at the end of the filename are photo files that were digitally duplicated to assess landmarking error specifically. Combine with the subgenus Megascapheus file of the same view before proceeding with analyses.
DOI: 10.5061/dryad.bj7n9/8
title: Geo-referrenced NRCS Soil Data for Northern California genus Thomomys pocket gophers

description: This CSV file contains the soil information extracted from the US Department of Agriculture (USDA)'s Natural Resource Conservation Service (NRCS) STATSGO soil database. The soil characteristics of clay, silt, sand, bulk density, linear extensibility are given as a weighted average for both a depth of 20cm and of 1m; the total soil depth for the area is also reported. These characteristics are associated with all unique specimen localities in our study area. Unique ID refers to the specimen's unique ID number in the Arctos collaborative museum database. The CatNum ID is the Museum of Vertebrate Zoology (MVZ) catalog number we use to identify specimens throughout our analyses. For more information about this dataset, please see Marcy et al (2013) PLOS ONE doi: http://dx.doi.org/10.1371/journal.pone.0064935
DOI: 10.5061/dryad.bm98q/1
title: Genepop outfile generated by Formatomatic V.0.8.1 for A and B populations of Amphirrhox longifolia.

description: SNPs for A and B populations of Amphirrhox longifolia (Violaceae).
DOI: 10.5061/dryad.cg250/1
title: EPD_Novelty_RoC_Data_and_Rscripts

description: All data were extracted from the European Pollen Database (EPD; http://www.europeanpollendatabase.net/) and the work of the data contributors and the EPD community is gratefully acknowledged. Please refer to the "readme.rtf" file for a more adequate description of the data and R scripts associated to this publication.
DOI: 10.5061/dryad.cm28r/2
title: Extraction_protocol

description: Extraction protocol followed in the manuscript.
DOI: 10.5061/dryad.cm28r/3
title: Final_Specimen&LibraryPrep

description: Excel file (with two tabs) with details on specimens and library prep information.
DOI: 10.5061/dryad.cm28r/4
title: Abyss contigs

description: The assembled contigs for each sequenced individual from Abyss, including the negative control.
DOI: 10.5061/dryad.cm28r/5
title: all_snakes_dataset1_informative_sites.inf.taxon

description: Tab delimited text files with information for resulting UCE loci for both the 50% missing data matrix and the 35% missing data matrix (i.e., 65% complete).
DOI: 10.5061/dryad.dr714/1
title: Cleaned alignment of CLE groups

description: Alignments of CLEs within each group. Positions with excessive gaps have been removed for the sake of visualization.
DOI: 10.5061/dryad.dr714/2
title: Raw alignments of CLE groups

description: Alignments of CLEs within each group.
DOI: 10.5061/dryad.f3bd1/1
title: The motifs identified in TRIM haDHSs

description: Using the FIMO software to identified the putative transcription binding site motifs in TRIM haDHSs. And the corresponding six-primates sequences of these motifs were downloaed from Ensembl.
DOI: 10.5061/dryad.f3bd1/2
title: Selection analysis of TRIM DHS

description: The TRIM DHS data was generated from 145 cell types DHS data in ENCODE. And the methodology of DHS selection analysis was based on our previous DHS research(Comprehensive identification and analysis of human accelerated regulatory DNA, Rachel et al.Genome Research).