cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17017465
title: Colibactin self resistance protein ClbS and ClbS like protein sequence data from the NORM hybrid assembly collection

description: Contains data about the colibactin self resistance protein ClbS and a putative ClbS like protein used in the study "Co-evolution between colibactin production and resistance is linked to clonal expansions in Escherichia coli".

References

Data

Isolation, sequencing, and assembly are described in the following two studies:

[1] Gladstone et al. "Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002–17: a nationwide, longitudinal, microbial population genomic study". The Lancet Microbe (2021). doi: 10.1016/S2666-5247(21)00031-8.

[2] Arredondo-Alonso et al. "Plasmid-driven strategies for clone success in Escherichia coli". Nature communications (2025). doi: 10.1038/s41467-025-57940-1.

Sequencing data is available from the European Nucleotide Archive under accession numbers PRJEB45354 and PRJEB57633.

Genome annotation

Genome annotation was performed using bakta v1.10.4 (GitHub: oschwengers/bakta) against full database v5.1 dated 2024-01-19 (doi: 10.5281/zenodo.10522951):

[3] Schwengers et al. "Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification." Microbial genomics (2021). doi: 10.1099/mgen.0.000685.

Annotation files are available in a separate Zenodo upload: doi: 10.5281/zenodo.17453317.

Protein alignment

Protein sequence similarity was computed with foldmason [4] against protein structure predictions extracted from AlphaFold [5].

[4] Gilchrist, C. L. M., Mirdita, M. & Steinegger, M. "Multiple protein structure alignment at scale with FoldMason." bioRxiv (2024) doi: 10.1101/2024.08.01.606130.

[5] Jumper, J. et al. "Highly accurate protein structure prediction with AlphaFold." Nature (2021). doi: 10.1038/s41586-021-03819-2.

Nucleotide similarity

Nucleotide sequence similarity was confirmed by using kbo [6] to find sequence homologs to representative clbS and clbS-like genes identified by protein alignment.

[6] Mäklin, T., Alanko, J. N., Biagi, E. & Puglisi, S. J. "Sequence alignment with k-bounded matching statistics." bioRxiv (2025) doi: 10.1101/2025.05.19.654936.
DOI: 10.15468/dl.5cnb3z
title: Occurrence Download

description: A dataset containing 770 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ukraine",
 "TaxonKey is Helianthus tuberosus"
 ]
}

 The dataset includes 770 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038714-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25442/hku.30404212
title: Dataset supports the thesis, entitled “Theoretical Models links Environment-Lifestyle-Health-Suicide: Using a natural experiment to assess impacts of urban environments on public housing residents’ health states, healthy lifestyle, and suicide-related factors”

description: This dataset supports the thesis, entitled “Theoretical Models links Environment-Lifestyle-Health-Suicide: Using a natural experiment to assess impacts of urban environments on public housing residents’ health states, healthy lifestyle, and suicide-related factors”.This comprehensive dataset encompasses individual-level factors collected via a large-scale online survey of 3,227 public housing residents in Hong Kong. The primary scope of this research is to investigate the complex network relationships between perceived built environment attributes (e.g., walkability, greenery, facilities), healthy lifestyle factors (e.g., physical activity, diet, sedentary behavior), three core health states (mental, physical, social), and crucial suicide-related factors derived from the Interpersonal Theory of Suicide (IPTS). The file merged_data_20250925 contains the synthesized and cleaned variables across these domains, while the accompanying scripts (GRF_project_2025_script_net_mgm_...) facilitate the network analysis using Mixed Graphical Models (mgm) to verify the hierarchical theoretical models. This study was funded by the GRF, and all data provided have been fully de-identified to protect participant privacy.<br><br>
DOI: 10.25442/hku.30404212.v1
title: Dataset supports the thesis, entitled “Theoretical Models links Environment-Lifestyle-Health-Suicide: Using a natural experiment to assess impacts of urban environments on public housing residents’ health states, healthy lifestyle, and suicide-related factors”

description: This dataset supports the thesis, entitled “Theoretical Models links Environment-Lifestyle-Health-Suicide: Using a natural experiment to assess impacts of urban environments on public housing residents’ health states, healthy lifestyle, and suicide-related factors”.This comprehensive dataset encompasses individual-level factors collected via a large-scale online survey of 3,227 public housing residents in Hong Kong. The primary scope of this research is to investigate the complex network relationships between perceived built environment attributes (e.g., walkability, greenery, facilities), healthy lifestyle factors (e.g., physical activity, diet, sedentary behavior), three core health states (mental, physical, social), and crucial suicide-related factors derived from the Interpersonal Theory of Suicide (IPTS). The file merged_data_20250925 contains the synthesized and cleaned variables across these domains, while the accompanying scripts (GRF_project_2025_script_net_mgm_...) facilitate the network analysis using Mixed Graphical Models (mgm) to verify the hierarchical theoretical models. This study was funded by the GRF, and all data provided have been fully de-identified to protect participant privacy.<br><br>
DOI: 10.15468/dl.nvep46
title: Occurrence Download

description: A dataset containing 209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Bashania fargesii"
 ]
}

 The dataset includes 209 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038715-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc12x7nw
title: CCDC 1010248: Experimental Crystal Structure Determination

description: Related Article: Stuart L. James,  M. Cristina Lagunas,  Peter N.Horton,  Michael B. Hursthouse|2008|University of Southampton, Crystal Structure Report Archive||599|doi:10.5258/ecrystals/599
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12x7px
title: CCDC 1010249: Experimental Crystal Structure Determination

description: Related Article: Stuart L. James,  M. Cristina Lagunas,  Peter N.Horton,  Michael B. Hursthouse|2008|University of Southampton, Crystal Structure Report Archive||601|doi:10.5258/ecrystals/601
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12x8kt
title: CCDC 1010276: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse|2008|University of Southampton, Crystal Structure Report Archive||575|doi:10.5258/ecrystals/575
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xg4l
title: CCDC 1010449: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse,  Terence L. Threlfall|2008|University of Southampton, Crystal Structure Report Archive||585|doi:10.5258/ecrystals/585
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xgbs
title: CCDC 1010455: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse|2008|University of Southampton, Crystal Structure Report Archive||559|doi:10.5258/ecrystals/559
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xgxc
title: CCDC 1010473: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse|2008|University of Southampton, Crystal Structure Report Archive||562|doi:10.5258/ecrystals/562
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xh8r
title: CCDC 1010484: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse|2008|University of Southampton, Crystal Structure Report Archive||566|doi:10.5258/ecrystals/566
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xj2l
title: CCDC 1010509: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse|2008|University of Southampton, Crystal Structure Report Archive||551|doi:10.5258/ecrystals/551
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xjj1
title: CCDC 1010523: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse|2008|University of Southampton, Crystal Structure Report Archive||552|doi:10.5258/ecrystals/552
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xjq7
title: CCDC 1010529: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse,  Terence L. Threlfall|2008|University of Southampton, Crystal Structure Report Archive||588|doi:10.5258/ecrystals/588
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xjvc
title: CCDC 1010533: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse|2008|University of Southampton, Crystal Structure Report Archive||567|doi:10.5258/ecrystals/567
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xjxf
title: CCDC 1010535: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse,  Terence L. Threlfall|2008|University of Southampton, Crystal Structure Report Archive||586|doi:10.5258/ecrystals/586
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xjyg
title: CCDC 1010536: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse|2008|University of Southampton, Crystal Structure Report Archive||556|doi:10.5258/ecrystals/556
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xjzh
title: CCDC 1010537: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse|2008|University of Southampton, Crystal Structure Report Archive||565|doi:10.5258/ecrystals/565
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xk0k
title: CCDC 1010538: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse,  Terence L. Threlfall|2008|University of Southampton, Crystal Structure Report Archive||579|doi:10.5258/ecrystals/579
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xk1l
title: CCDC 1010539: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse,  Terence L. Threlfall|2008|University of Southampton, Crystal Structure Report Archive||577|doi:10.5258/ecrystals/577
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xkn6
title: CCDC 1010558: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse,  Terence L. Threlfall|2008|University of Southampton, Crystal Structure Report Archive||558|doi:10.5258/ecrystals/558
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.17628053
title: Investigation of water dynamics in thick sedimentary sequences with fiber-optic technology
DOI: 10.5517/cc12xkq8
title: CCDC 1010560: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse|2008|University of Southampton, Crystal Structure Report Archive||572|doi:10.5258/ecrystals/572
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xkvd
title: CCDC 1010564: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse|2008|University of Southampton, Crystal Structure Report Archive||563|doi:10.5258/ecrystals/563
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xn2q
title: CCDC 1010633: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse|2008|University of Southampton, Crystal Structure Report Archive||510|doi:10.5258/ecrystals/510
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.17628052
title: Investigation of water dynamics in thick sedimentary sequences with fiber-optic technology
DOI: 10.5517/cc12xn3r
title: CCDC 1010634: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse|2008|University of Southampton, Crystal Structure Report Archive||502|doi:10.5258/ecrystals/502
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xn4s
title: CCDC 1010635: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse|2008|University of Southampton, Crystal Structure Report Archive||519|doi:10.5258/ecrystals/519
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xn5t
title: CCDC 1010636: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse|2008|University of Southampton, Crystal Structure Report Archive||518|doi:10.5258/ecrystals/518
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xnbz
title: CCDC 1010641: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse,  Terence L. Threlfall|2008|University of Southampton, Crystal Structure Report Archive||584|doi:10.5258/ecrystals/584
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xnc0
title: CCDC 1010642: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse,  Terence L. Threlfall|2008|University of Southampton, Crystal Structure Report Archive||583|doi:10.5258/ecrystals/583
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xnd1
title: CCDC 1010643: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse,  Terence L. Threlfall|2008|University of Southampton, Crystal Structure Report Archive||582|doi:10.5258/ecrystals/582
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12xnf2
title: CCDC 1010644: Experimental Crystal Structure Determination

description: Related Article: Samantha K. Callear,  Michael B. Hursthouse|2008|University of Southampton, Crystal Structure Report Archive||592|doi:10.5258/ecrystals/592
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.