cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.1219824
title: Dataset: Seasonal Field Trials Of Single-Seed Removal By Desert Birds From Experimental Devices In Ñacuñan Reserve (Mendoza, Argentina)

description: Dataset for the paper: Milesi FA, Lopez de Casenave J & Cueto VR (2018) Which food patches are worth exploring? Foraging desert birds do not follow environmental indicators of seed abundance at small scales: a field experiment. bioRxiv 295923. doi: https://doi.org/10.1101/295923

Metadata included within the tab-delimited text file
description: tab-delimited text file
description: {"references": ["Milesi FA, Lopez de Casenave J & Cueto VR (2018) Which food patches are worth exploring? Foraging desert birds do not follow environmental indicators of seed abundance at small scales: a field experiment. bioRxiv 295923"]}
DOI: 10.5281/zenodo.1219825
title: Dataset: Seasonal Field Trials Of Single-Seed Removal By Desert Birds From Experimental Devices In Ñacuñan Reserve (Mendoza, Argentina)

description: Dataset for the paper: Milesi FA, Lopez de Casenave J & Cueto VR (2018) Which food patches are worth exploring? Foraging desert birds do not follow environmental indicators of seed abundance at small scales: a field experiment. bioRxiv 295923. doi: https://doi.org/10.1101/295923

Metadata included within the tab-delimited text file
description: tab-delimited text file
description: {"references": ["Milesi FA, Lopez de Casenave J & Cueto VR (2018) Which food patches are worth exploring? Foraging desert birds do not follow environmental indicators of seed abundance at small scales: a field experiment. bioRxiv 295923"]}
DOI: 10.5517/ccdc.csd.cc1zp2j8
title: CCDC 1837510: Experimental Crystal Structure Determination

description: Related Article: Brian W. Skelton, Murray V. Baker, Nicole L. Armanasco|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zp4b4
title: CCDC 1837566: Experimental Crystal Structure Determination

description: Related Article: Frank R. Fronczek|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.1042107
title: Geodar Data Of Snow Avalanches At Vallée De La Sionne: Seasons 2010/11, 2011/12, 2012/13 & 2014/15 [Data Set]

description: This data repository contains radar data from 77 snow avalanches recorded using the GEODAR (GEOphysical flow dynamics using pulsed Doppler radAR) system at the Swiss full-scale avalanche testsite Vallée de la Sionne. GEODAR is a purpose built, advanced phased-array FMCW system.

The data contain range-time plots of intensities gained from moving target identification (MTI) processing (-MTI.h5), an PDF preview image (-MTI.pdf), the trajectory of the front in range and time (-TRAJ-001.h5), the corresponding Thalweg as steepest descent from release area (-Thal-001.h5) and a processing info file in Matlab format (-info.mat).

This document covers details about the different versions of the radar setup and raw data processing steps as well as a description of the repository content (see file geodar_repository.pdf).
description: The GEODAR system was build during a project founded by Natural Environment Research Council, grant ref. NE/F004621/1 and a follow up grant by Physical Sciences Research Council, grant ref. EP/K00767X/1.
description: {"references": ["K\u00f6hler, A., J. N. McElwaine, and B. Sovilla (2018), GEODAR Data and the Flow Regimes of Snow Avalanches, J. Geophys. Res., doi: 10.1002/2017JF004375"]}
DOI: 10.5281/zenodo.1219675
title: Human Alpha-Aminoadipic Semialdehyde Synthase (Aass); A Target Enabling Package

description: This work provides the early tools to develop substrate reduction inhibitors for a genetic childhood seizure disorder, with the hypothesis to target the enzyme (AASS) upstream of the defective gene (ALDH7A1) in the human lysine metabolic pathway. This TEP package includes recombinant human AASS purification protocols, structures of the AASS second domain in different states, in vitro assays to detect ligand binding (differential scanning fluorimetry) and enzyme activity (NADH formation) of human AASS, as well as initial chemical matters.
description: This deposition represents version 2 of the TEP datasheet. Changes include, but are not limited to: Addition of hyperlinks throughout the body of the datasheet; Addition of Useful Links to relevant databases; Addition of a Reference box where applicable; Other modifications necessary for page spacing and visualisation. Please note, all data and results within the document remain the same as provided in version 1.

To see version 1: https://doi.org/10.5287/bodleian:9R6aYwPGq
DOI: 10.15151/esrf-es-24212102
title: TEST
DOI: 10.5281/zenodo.1219832
title: Data And Materials For "Prevalence-Induced Concept Change In Human Judgment"

description: updated release for publication
DOI: 10.5281/zenodo.1219833
title: Data And Materials For "Prevalence-Induced Concept Change In Human Judgment"

description: initial release for publication
DOI: 10.18169/papdeott007084
title: Gerätehalter zur einfachen Wandmontage
DOI: 10.5281/zenodo.1219678
title: Beyond Throughput: A 4G Lte Dataset With Channel And Context Metrics

description: The following provides a 4G trace dataset composed of client-side cellular key performance indicators (KPIs) collected from two major Irish mobile operators, across different mobility patterns (static, pedestrian, car, tram and train). The 4G trace dataset contains 135 traces, with an average duration of fifteen minutes per trace, with viewable throughput ranging from 0 to 173 Mbit/s at a granularity of one sample per second. Our traces are generated from a well-known non-rooted Android network monitoring application, G-NetTrack Pro. This tool enables capturing various channel related KPIs, context-related metrics, downlink and uplink throughput, and also cell-related information.

To supplement our real-time 4G production network dataset, we also provide a synthetic dataset generated from a large-scale 4G ns-3 simulation that includes one hundred users randomly scattered across a seven-cell cluster. The purpose of this dataset is to provide additional information (such as competing metrics for users connected to the same cell), thus providing otherwise unavailable information about the eNodeB environment and scheduling principle, to end user. In addition to this dataset, we also provide the code and context information to allow other researchers to generate their own synthetic datasets.
DOI: 10.5281/zenodo.1219681
title: Human Cyclin-Dependent Kinase 12 (Cdk12), Kinase Domain; A Target Enabling Package

description: Cyclin-dependent kinase 12 (CDK12) phosphorylates RNA Pol II C-terminal domain (CTD) to promote transcriptional elongation of large DNA damage response genes. CDK12 is frequently mutated or amplified in cancer and its loss sensitises cells to DNA damage. Here we present 3 crystal structures of the human CDK12/CycK complex including apo, AMP-PNP and covalent inhibitor complexes. Kinase assays compare domain truncations and report the Km values for substrate. THZ531 is presented as a potent and selective inhibitor of CDK12 with nanomolar activity in leukemic cell lines.
description: This deposition represents version 2 of the TEP datasheet. Changes include, but are not limited to: Addition of hyperlinks throughout the body of the datasheet; Addition of Useful Links to relevant databases; Addition of a Reference box where applicable; Other modifications necessary for page spacing and visualisation. Please note, all data and results within the document remain the same as provided in version 1.

To see version 1: https://doi.org/10.5287/bodleian:zgNjZeGBE
DOI: 10.17632/7j6bn6tx8f.1
title: Data for: Can They Ever Be One of Us? Perceived Cultural Malleability of Refugees and Policy Support in Host Nations

description: The files provide the data necessary to replicate the results reported for Study 1, Study 2a, and Study 2b. The files include the variables that are relevant to the hypotheses tested in the paper.
DOI: 10.18169/papdeott007085
title: Scharnier zur Befestigung eines Frontcovers
DOI: 10.5281/zenodo.1219691
title: Human Dna Cross-Link Repair 1A (Dclre1A. Snm1A); A Target Enabling Package

description: Cancer cells experience genomic instability, probably through a combination of excessive replicative activity and the loss of function of checkpoint and DNA repair pathways that may have contributed to the oncogenic transformation. Chemotherapy by DNA-damaging agents such as cisplatin and nitrogen mustards create DNA interstrand crosslinks (ICL), which can lead to double-strand breaks and cell death when the cells replicate their DNA. Genotoxic drugs are counteracted by the cell’s DNA damage response. Hence, it is expected that inhibiting DNA repair proteins would sensitise cells to chemotherapy.<br>
Here we address an enzyme that participates in the repair of ICLs, DCLRE1A. The TEP includes expression clones and methods for producing the catalytic domain and high-throughput activity assays. Furthermore, we provide a crystallization system that generates thousands of reproducible crystals that allow soaking of small-molecule ligands. We provide crystal structures of several small molecule fragments and inhibitors, opening the way to development of more potent and selective inhibitors.
description: This deposition represents version 2 of the TEP datasheet. Changes include, but are not limited to: Addition of hyperlinks throughout the body of the datasheet; Addition of Useful Links to relevant databases; Addition of a Reference box where applicable; Other modifications necessary for page spacing and visualisation. Please note, all data and results within the document remain the same as provided in version 1.
To see version 1: https://doi.org/10.5287/bodleian:KzD6aQNJ5
DOI: 10.5281/zenodo.1219676
title: Reading Hyperlinks

description: This is a eye-tracking dataset in the BIDS format (http://bids.neuroimaging.io/).

Please find the details on the study here:

Gagl B. (2016) Blue hypertext is a good design decision: no perceptual disadvantage in reading and successful highlighting of relevant information. PeerJ 4:e2467 https://doi.org/10.7717/peerj.2467
description: {"references": ["Gagl B. (2016) Blue hypertext is a good design decision: no perceptual disadvantage in reading and successful highlighting of relevant information. PeerJ 4:e2467 https://doi.org/10.7717/peerj.2467"]}
DOI: 10.5281/zenodo.1219677
title: Reading Hyperlinks

description: This is a eye-tracking dataset in the BIDS format (http://bids.neuroimaging.io/).

Please find the details on the study here:

Gagl B. (2016) Blue hypertext is a good design decision: no perceptual disadvantage in reading and successful highlighting of relevant information. PeerJ 4:e2467 https://doi.org/10.7717/peerj.2467
description: {"references": ["Gagl B. (2016) Blue hypertext is a good design decision: no perceptual disadvantage in reading and successful highlighting of relevant information. PeerJ 4:e2467 https://doi.org/10.7717/peerj.2467"]}
DOI: 10.5281/zenodo.1219695
title: Human Dolichyl-Phosphate Alpha-N-Acetyl Glucosaminyl Transferase (Dpagt1); A Target Enabling Package

description: The ER integral membrane enzyme dolichyl-phosphate alpha-N-acetyl glucosaminyl phosphotransferase (DPAGT1) catalyses the first step in the synthesis of the oligosaccharide-P-P-dolichol unit which provides the glycans structure for N-glycosylation of proteins. Mutations in DPAGT1 cause two muscle weakness conditions, limb-girdle congenital myasthenic syndrome (CMS) and congenital disorder of glycosylation type 1j (CDG1j). DPAGT1 overexpression has also been implicated in oral cancer. We have produced and solved structures of this integral membrane enzyme, DPAGT1 with the V264G mutation found in a patient with CMS, and complexes with a 50 nM inhibitor, tunicamycin. We have developed enzymatic activity and thermostability assays which have allowed us to assess the activity and stability of DPAGT1 mutants and the effect of small molecules. There are &gt; 20 DPAGT1 associated missense variants in patients with CMS and CDG1j. We have mapped these mutations to the structure, and we will used the assays described here to assess how the activity and stability of DPAGT1 is affected by these missense variants.
description: This deposition represents version 2 of the TEP datasheet. Changes include, but are not limited to: Addition of hyperlinks throughout the body of the datasheet; Addition of Useful Links to relevant databases; Addition of a Reference box where applicable; Other modifications necessary for page spacing and visualisation. Please note, all data and results within the document remain the same as provided in version 1.
To see version 1: https://doi.org/10.5287/bodleian:y0r1MKpmx
DOI: 10.6073/pasta/5a7ff3fe4b1baebe866e004916958cd1
title: PIE LTER Year 2014, 15 minute measurements of conductivity, water temperature at the Parker River head of tide, Central St. Dam in Newbury, MA.

description: Year 2014, continuous measurements, every 15 minutes were made of conductivity, water temperature in the Parker River behind the head of tide Central St. Dam in Newbury, MA.
DOI: 10.5281/zenodo.1219288
title: Peculiar Torsion Dynamical Response Of Spider Dragline Silk

description: These data are related to our paper "Dabiao Liu, Longteng Yu, Yuming He*, Kai Peng, Jie Liu, Juan Guan, and D. J. Dunstan. Peculiar Torsion Dynamical Response of Spider Dragline Silk. Applied Physics Letters, 111 (2017), 013701." In this work, the torsional properties of spider dragline silks from Nephila edulis and Nephila pilipes spiders are investigated by using a torsion pendulum technique. A permanent torsional deformation is observed after even small torsional strain. This behaviour is quite different from that of the other materials tested here, i.e., carbon fiber, thin metallic wires, Kevlar fiber, and human hair. The spider dragline thus displays a strong energy dissipation upon the initial excitation (around 75% for small strains and more for a larger strain), which correspondingly reduces the amplitude of subsequent oscillations around the new equilibrium position. The variation of torsional stiffness in relaxation dynamics of spider draglines for different excitations is also determined. The experimental result is interpreted in the light of the hierarchical structure of dragline silk.

This project has received funding from the EU’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie Grant Agreement No. 704292.
DOI: 10.5281/zenodo.1219412
title: Simulation Cer160_50_Popc_512_Tm3_10_5Up_5Down_Nacl_150Mm_310K (Rep2)

description: <strong>Title publication: </strong><em>A Ceramide-Regulated Element in the Late Endosomal Protein LAPTM4B Controls Amino Acid Transporter Interaction</em>

<strong><strong>Year publication:</strong></strong><strong> </strong>2018

<strong>DOI publication:</strong> XXXXX

<strong>Description:</strong> Simulation POPC membrane containing ~8 mol% ceramide (CER160) and ten LAPTM4B-TM3 peptides using charmm36 at 310K.

<strong>MD engine:</strong> Gromacs 2016.2-dev-20170105-4feb0be

<strong>Force field</strong>: charmm36

<strong>Temperature</strong>: 310 K

<strong>Pressure:</strong> 1 bar

<strong>Simulation time</strong>: 2971 ns

<strong>Saving frequency</strong>: 100 ps

<strong>Molecular content</strong>:<br>
TM3            10<br>
POPC        512<br>
CER160      50<br>
SOL      28090<br>
NA              85<br>
CL              75

<strong>Additional </strong><strong>information</strong>:<br>
    * Membrane containing LAPTM4B TM3 peptides.
DOI: 10.5281/zenodo.1219287
title: Peculiar Torsion Dynamical Response Of Spider Dragline Silk

description: These data are related to our paper "Dabiao Liu, Longteng Yu, Yuming He*, Kai Peng, Jie Liu, Juan Guan, and D. J. Dunstan. Peculiar Torsion Dynamical Response of Spider Dragline Silk. Applied Physics Letters, 111 (2017), 013701." In this work, the torsional properties of spider dragline silks from Nephila edulis and Nephila pilipes spiders are investigated by using a torsion pendulum technique. A permanent torsional deformation is observed after even small torsional strain. This behaviour is quite different from that of the other materials tested here, i.e., carbon fiber, thin metallic wires, Kevlar fiber, and human hair. The spider dragline thus displays a strong energy dissipation upon the initial excitation (around 75% for small strains and more for a larger strain), which correspondingly reduces the amplitude of subsequent oscillations around the new equilibrium position. The variation of torsional stiffness in relaxation dynamics of spider draglines for different excitations is also determined. The experimental result is interpreted in the light of the hierarchical structure of dragline silk.

This project has received funding from the EU’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie Grant Agreement No. 704292.
DOI: 10.5281/zenodo.1219413
title: Simulation Cer160_50_Popc_512_Tm3_10_5Up_5Down_Nacl_150Mm_310K (Rep2)

description: <strong>Title publication: </strong><em>A Ceramide-Regulated Element in the Late Endosomal Protein LAPTM4B Controls Amino Acid Transporter Interaction</em>

<strong><strong>Year publication:</strong></strong><strong> </strong>2018

<strong>DOI publication:</strong> XXXXX

<strong>Description:</strong> Simulation POPC membrane containing ~8 mol% ceramide (CER160) and ten LAPTM4B-TM3 peptides using charmm36 at 310K.

<strong>MD engine:</strong> Gromacs 2016.2-dev-20170105-4feb0be

<strong>Force field</strong>: charmm36

<strong>Temperature</strong>: 310 K

<strong>Pressure:</strong> 1 bar

<strong>Simulation time</strong>: 2971 ns

<strong>Saving frequency</strong>: 100 ps

<strong>Molecular content</strong>:<br>
TM3            10<br>
POPC        512<br>
CER160      50<br>
SOL      28090<br>
NA              85<br>
CL              75

<strong>Additional </strong><strong>information</strong>:<br>
    * Membrane containing LAPTM4B TM3 peptides.
DOI: 10.5281/zenodo.1219696
title: Human Lysine Demethylase Jmjd1B (Kdm3B); A Target Enabling Package

description: There are 3 members of the Lysine Demethylase JMJD1 (KDM3) family, JMJD1A-C. SGC Oxford has expressed, purified and crystallized the catalytic domains of JMJD1A, JMJD1B and JMJD1C as part of the probe programme. Fragment screening and X-ray crystallography identified a large number of binders, some of which were progressed into a medicinal chemistry programme. Despite significant effort molecules with probe properties were not obtained. Consequently it has been decided to put the information generated into the public domain.
description: This document represents version 5 of the TEP datasheet and includes all updates on the project as of October 2018.  For more information about TEPs and the TEP Programme, please visit https://thesgc.org/tep.
DOI: 10.5281/zenodo.1219697
title: Human Lysine Demethylase Jmjd1B (Kdm3B); A Target Enabling Package

description: There are 3 members of the Lysine Demethylase JMJD1 (KDM3) family, JMJD1A-C. SGC Oxford has expressed, purified and crystallized the catalytic domains of JMJD1A, JMJD1B and JMJD1C as part of the probe programme. Fragment screening and X-ray crystallography identified a large number of binders, some of which were progressed into a medicinal chemistry programme. Despite significant effort molecules with probe properties were not obtained. Consequently it has been decided to put the information generated into the public domain.
description: The work at the SGC has been supported by the Innovative Medicines Initiative Joint Undertaking (IMI JU) under grant agreement [115766].

This deposition represents version 2 of the TEP datasheet. Changes include, but are not limited to: Addition of hyperlinks throughout the body of the datasheet; Addition of Useful Links to relevant databases; Addition of a Reference box where applicable; Other modifications necessary for page spacing and visualisation. Please note, all data and results within the document remain the same as provided in version 1.
To see version 1: https://doi.org/10.5287/bodleian:wxBRwqJx2
DOI: 10.5281/zenodo.1219473
title: Statistical Test Of Distance–Duality Relation With Type Ia Supernovae And Baryon Acoustic Oscillations (3Rd Version)

description: <strong>Summary</strong>

This package contains data and processing tools for replicating the research presented in the paper "Statistical Test of Distance–Duality Relation with Type Ia Supernovae and Baryon Acoustic Oscillations" (2018, ApJ, DOI: 10.3847/1538-4357/aac88f, arXiv:1604.04631).

The compressed archive file "ddmc-nosample-v3.1.tar.xz" contains only the compressed SNIa data, the BAO measurements, and 3rd-party data files used in this work.  The random samples can be re-created by the tools included in the package.  This is the file suitable for low-speed download.

The file "ddmc-v3.1.tar.xz" contains the full set of random sample output files and analysis results in addition to those in the "ddmc-nosample-v3.1.tar.xz" file. This is the archive containing all the data and figure files used directly in the paper.

To uncompress the files, the XZ Utils software package is required.

The file "CHECKSUM.asc" is a GPG-clearsigned text file containing the SHA-512 checksum values for file integrity verification.  The text file itself is signed with the GPG key 0xE977A6E990102402 available from keyservers.

Please read the README files in each package for more details and instructions.

<strong>Release notes for version 3.1</strong>

Version 3.1 is a minor revision with the addition of some alternative input parameter distributions.

<strong>Release notes for version 3</strong>

This is the 3rd version representing a re-written analysis of the distance-duality test. This new version updated and renamed the complementary parameter (CP) sets to match the ones used in the paper. New results concerning the interpretation of results as a diagnostics of distance measurement systematics are presented. Also included are updated utility scripts, new tests for Gaussian approximation to the results, and new data-visualization scripts.

<strong>Earlier versions</strong>

Earlier versions are available from Zenodo. Links: v1, v2.
DOI: 10.5281/zenodo.1219698
title: Human Lysine Demethylase Jmjd2D (Kdm4D); A Target Enabling Package

description: There are 4 members of the Lysine Demethylase JMJD2 (KDM4) family. SGC Oxford has expressed, purified and crystallized the catalytic domains of JMJD2A, JMJD2B, JMJD2C and JMJD2D as part of the probe programme. Fragment screening and X-ray crystallography identified a large number of binders, some of which were progressed into a medicinal chemistry programme. Despite significant effort molecules with probe properties were not obtained. Consequently it has been decided to put the information generated into the public domain.
description: This document represents version 5 of the TEP datasheet and includes all updates on the project as of October 2018.  For more information about TEPs and the TEP Programme, please visit https://thesgc.org/tep.