cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1289317
title: #FORCE2015 Twitter Archive

description: <strong>LICENSE is CC0</strong> don't worry about citing it :-) This is an archive of tweets gathered for the FORCE 2015 conference (https://www.force11.org/meetings/force2015). Gathered using https://tags.hawksey.info
DOI: 10.6084/m9.figshare.1289316
title: Gaussian Job Archive for C14H14N2OS

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1289317.v1
title: #FORCE2015 Twitter Archive

description: <strong>LICENSE is CC0</strong> don't worry about citing it :-) This is an archive of tweets gathered for the FORCE 2015 conference (https://www.force11.org/meetings/force2015). Gathered using https://tags.hawksey.info
DOI: 10.6084/m9.figshare.1289320.v5
title: Phytosociological analysis of the <i>Genista</i> sp. pl. garrigues of the <i>Cisto</i>-<i>Lavanduletea</i> and <i>Rosmarinetea</i><i>officinalis</i> classes in the South-Tyrrhenian area (Mediterranean Region)

description: The study reviews the <i>Genista</i> sp. pl. garrigues ascribable to the classes <i>Cisto</i>-<i>Lavanduletea</i> (acidophilous communities on volcanics and quartzarenites) and <i>Rosmarinetea</i><i>officinalis</i> (basiphilous communities on calcareous and calcareous-dolomite substrates), in the southern territories of the Italo-Tyrrhenian Province. The floristic-synecological characterization of the identified coenoses led to the description and/or redefinition of various new syntaxa. They are distributed in the two new suballiances <i>Calicotomo</i><i>villosae</i>–<i>Genistenion</i><i>tyrrhenae</i> and <i>Genisto</i><i>aristatae</i>–<i>Calicotomenion</i><i>infestae</i> of the class <i>Cisto</i>-<i>Lavanduletea</i> (<i>Lavanduletalia</i><i>stoechadis</i> and <i>Calicotomo</i><i>villosae</i>–<i>Genistion</i><i>tyrrhenae</i>), and in the alliance <i>Cisto</i><i>eriocephali</i>–<i>Ericion</i><i>multiflorae</i> of the class <i>Rosmarinetea</i><i>officinalis</i> (<i>Rosmarinetalia</i><i>officinalis</i>), with two new described associations.
DOI: 10.6084/m9.figshare.1289314
title: Gaussian Job Archive for C14H14N2OS

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1289313
title: new fileset

description: EEG, electrode positions and mri recording
DOI: 10.6084/m9.figshare.1289315
title: Gaussian Job Archive for C14H14N2OS

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1289316.v1
title: Gaussian Job Archive for C14H14N2OS

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1289312
title: Identification of real microRNA precursors with a pseudo structure status composition approach

description: The benchmark dataset contains 3,224 human pre-miRNAs, of which 1,612 are real pre-­miRNAs and 1,612 are false pre-­miRNAs. None of the sequences included has ≥80%<br>pairwise sequence identity with any other.
DOI: 10.6084/m9.figshare.1289314.v1
title: Gaussian Job Archive for C14H14N2OS

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1289315.v1
title: Gaussian Job Archive for C14H14N2OS

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1289308
title: Pharmacokinetics of repeated sodium salicylate administration to laying hens: evidence for time dependent increase in drug elimination from plasma and eggs

description: This set of data is a supplement to the manuscript entitled: "Pharmacokinetics of repeated sodium salicylate administration to laying hens: evidence for time dependent increase in drug elimination from plasma and eggs"
DOI: 10.6084/m9.figshare.1289310
title: Raw metadata for Gastrointestinal nematodes in sympatric endemic and non-endemic species in Ranomafana National Park, Madagascar

description: This file includes the metadata for all samples and succession numbers in Sequence Read Archive for every succesfully amplified and sequenced sample
DOI: 10.6084/m9.figshare.1289308.v1
title: Pharmacokinetics of repeated sodium salicylate administration to laying hens: evidence for time dependent increase in drug elimination from plasma and eggs

description: This set of data is a supplement to the manuscript entitled: "Pharmacokinetics of repeated sodium salicylate administration to laying hens: evidence for time dependent increase in drug elimination from plasma and eggs"
DOI: 10.6084/m9.figshare.1289242
title: Annotation file for the Hirudo Medicinalis

description: This data is an annotation file for the Hirudo Medicinalis. This database is an extended work from Hibsh et al. 2014 Bioinformatics.
DOI: 10.6084/m9.figshare.1289310.v1
title: Raw metadata for Gastrointestinal nematodes in sympatric endemic and non-endemic species in Ranomafana National Park, Madagascar

description: This file includes the metadata for all samples and succession numbers in Sequence Read Archive for every succesfully amplified and sequenced sample
DOI: 10.6084/m9.figshare.1289214
title: SwissParam CHARMM Parameters files for the cancer drugs Cytarabine, Daunorubicin, Doxorubicin, and Vincristine

description: The SwissParam CHARMM parameters used in the study for the anti-cancer drugs Cytarabine, Daunorubicin, Doxorubicin, and Vincristine are provided here in zip file. Zip files can be opened by double-click the ZIP file in any operating systems.
DOI: 10.6084/m9.figshare.1289239
title: Long-term Investing with Stock ETFs

description: A brief guide to long-term investing for private investors.
DOI: 10.6084/m9.figshare.1289154
title: Apt Compiler Toolkit (Legacy Document)

description: An LL(1) parsing toolkit, lexcial analysis library, and abstract data structures collection written in ANSI C by the author from 1989-1991. One of George's first CS projects, begun as an undergraduate student.
DOI: 10.6084/m9.figshare.1289239.v1
title: Long-term Investing with Stock ETFs

description: A brief guide to long-term investing for private investors.
DOI: 10.6084/m9.figshare.1289242.v1
title: Annotation file for the Hirudo Medicinalis

description: This data is an annotation file for the Hirudo Medicinalis. This database is an extended work from Hibsh et al. 2014 Bioinformatics.
DOI: 10.6084/m9.figshare.1289069
title: Experimental Data

description: Collection of Experimental Data
DOI: 10.6084/m9.figshare.1289043
title: 2.2 Experimental

description: Experimental files for compound 2.2
DOI: 10.6084/m9.figshare.1289069.v1
title: Experimental Data

description: Collection of Experimental Data
DOI: 10.6084/m9.figshare.1289214.v1
title: Parameters for the drugs

description: The parameters used in the study are provided here.
DOI: 10.6084/m9.figshare.1289041
title: 2.4 Experimental

description: Experimental files for compound 2.4
DOI: 10.6084/m9.figshare.1289043.v1
title: 2.2 Experimental

description: Experimental files for compound 2.2
DOI: 10.6084/m9.figshare.1289039
title: 2.6 Experimental

description: Experimental files for compound 2.6.
DOI: 10.6084/m9.figshare.1289042
title: 2.3 Experimental

description: Experimental files for compound 2.3.
DOI: 10.6084/m9.figshare.1289040
title: 2.5 Experimental

description: Experimental files for compound 2.5
DOI: 10.6084/m9.figshare.1289041.v1
title: 2.4 Experimental

description: Experimental files for compound 2.4
DOI: 10.6084/m9.figshare.1289214.v2
title: SwissParam CHARMM Parameters files for the cancer drugs Cytarabine, Daunorubicin, Doxorubicin, and Vincristine

description: The SwissParam CHARMM parameters used in the study for the anti-cancer drugs Cytarabine, Daunorubicin, Doxorubicin, and Vincristine are provided here in zip file. Zip files can be opened by double-click the ZIP file in any operating systems.
DOI: 10.6084/m9.figshare.1289039.v1
title: 2.6 Experimental

description: Experimental files for compound 2.6.
DOI: 10.6084/m9.figshare.1289042.v1
title: 2.3 Experimental

description: Experimental files for compound 2.3.
DOI: 10.6084/m9.figshare.1288997
title: 2.1 Experimental

description: Experimental files for compound 2.1
DOI: 10.6084/m9.figshare.1289036
title: 2.8 Experimental

description: Experimental files for compound 2.8.
DOI: 10.6084/m9.figshare.1289038
title: 2.7 Experimental

description: Experimental files for compound 2.7
DOI: 10.6084/m9.figshare.1289040.v1
title: 2.5 Experimental

description: Experimental files for compound 2.5
DOI: 10.6084/m9.figshare.1289035
title: 2.8 X-Ray Structure

description: 2.8 X-Ray structure
DOI: 10.6084/m9.figshare.1288983
title: What are high statistical standards?

description: A comment on Tressoldi et al's article on journals' impact factor and statistical quality (PLOS ONE 8(2), e56180, 2013, doi:10.1371/journal.pone.0056180) on the author's page at Frontiers in Psychology's Loop profiles.
DOI: 10.6084/m9.figshare.1288997.v1
title: 2.1 Experimental

description: Experimental files for compound 2.1
DOI: 10.6084/m9.figshare.1289036.v1
title: 2.8 Experimental

description: Experimental files for compound 2.8.
DOI: 10.6084/m9.figshare.1289038.v1
title: 2.7 Experimental

description: Experimental files for compound 2.7
DOI: 10.6084/m9.figshare.1288983.v1
title: What are high statistical standards?

description: A comment on Tressoldi et al's article on journals' impact factor and statistical quality (PLOS ONE 8(2), e56180, 2013, doi:10.1371/journal.pone.0056180) on the author's page at Frontiers in Psychology's Loop profiles.
DOI: 10.6084/m9.figshare.1289035.v1
title: 2.8 X-Ray Structure

description: 2.8 X-Ray structure
DOI: 10.6084/m9.figshare.1288936
title: Ouse Fen / Fen Drayton visitor questionnaire dataset

description: Visitor questionnaires conducted during 2012.
DOI: 10.6084/m9.figshare.1288936.v1
title: Ouse Fen / Fen Drayton visitor questionnaire dataset

description: Visitor questionnaires conducted during 2012.
DOI: 10.6084/m9.figshare.1288935
title: Biomedical Data Sharing and Reuse: Attitudes and Practices of Clinical and Scientific Research Staff

description: Results of a survey conducted at the National Institutes of Health to assess researchers' attitudes and practices regarding data sharing. Article reporting full results currently pending publication.
DOI: 10.6084/m9.figshare.1288864
title: Genome wide chromatin occupancy of <i>mrhl</i> RNA and its role in gene regulation in mouse spermatogonial cells

description: <i>Mrhl</i> RNA is a nuclear lncRNA encoded in the mouse genome and negatively regulates Wnt signaling in spermatogonial cells through p68/Ddx5 RNA helicase. <i>Mrhl</i> RNA is present in the chromatin fraction of mouse spermatogonial Gc1-Spg cells and genome wide chromatin occupancy of <i>mrhl</i> RNA by ChOP (Chromatin oligo affinity precipitation) technique identified 1370 statistically significant genomic loci. Among these, genes at 37 genomic loci also showed altered expression pattern upon <i>mrhl</i> RNA down regulation which are referred to as GRPAM (Genes Regulated by Physical Association of <i>Mrhl</i> RNA). p68 interacted with <i>mrhl</i> RNA in chromatin at these GRPAM loci. p68 silencing drastically reduced <i>mrhl</i> RNA occupancy at 27 GRPAM loci and also perturbed the expression of GRPAM suggesting a role for p68 mediated <i>mrhl</i> RNA occupancy in regulating GRPAM expression. Wnt3a ligand treatment of Gc1-Spg cells down regulated <i>mrhl</i> RNA expression and also perturbed expression of these 27 GRPAM genes that included genes regulating Wnt signaling pathway and spermatogenesis, one of them being Sox8, a developmentally important transcription factor. We also identified interacting proteins of <i>mrhl</i> RNA associated chromatin fraction which included Pc4, a chromatin organizer protein and hnRNP A/B and hnRNP A2/B1 which have been shown to be associated with lincRNA-Cox2 function in gene regulation. Our findings in the Gc1-Spg cell line also correlate with the results from analysis of mouse testicular tissue which further highlights the <i>in vivo</i> physiological significance of <i>mrhl</i> RNA in the context of gene regulation during mammalian spermatogenesis.
DOI: 10.6084/m9.figshare.1288861
title: Loss of <i>Atg12</i>, but not <i>Atg5</i>, in pro-opiomelanocortin neurons exacerbates diet-induced obesity

description: The autophagy-related proteins ATG12 and ATG5 form a covalent complex essential for autophagy. Here, we demonstrate that ATG12 has distinct functions from ATG5 in pro-opiomelanocortin (POMC)-expressing neurons. Upon high-fat diet (HFD) consumption, mice lacking <i>Atg12</i> in POMC-positive neurons exhibit accelerated weight gain, adiposity, and glucose intolerance, which is associated with increased food intake, reduced ambulation, and decreased LEP/leptin sensitivity. Importantly, although genetic deletion of either <i>Atg12</i> or <i>Atg5</i> renders POMC neurons autophagy-deficient, mice lacking <i>Atg5</i> in POMC neurons do not exhibit these phenotypes. Hence, we propose nonautophagic functions for ATG12 in POMC neurons that counteract excessive weight gain in response to HFD consumption.
DOI: 10.6084/m9.figshare.1288864.v1
title: Genome wide chromatin occupancy of <i>mrhl</i> RNA and its role in gene regulation in mouse spermatogonial cells

description: <i>Mrhl</i> RNA is a nuclear lncRNA encoded in the mouse genome and negatively regulates Wnt signaling in spermatogonial cells through p68/Ddx5 RNA helicase. <i>Mrhl</i> RNA is present in the chromatin fraction of mouse spermatogonial Gc1-Spg cells and genome wide chromatin occupancy of <i>mrhl</i> RNA by ChOP (Chromatin oligo affinity precipitation) technique identified 1370 statistically significant genomic loci. Among these, genes at 37 genomic loci also showed altered expression pattern upon <i>mrhl</i> RNA down regulation which are referred to as GRPAM (Genes Regulated by Physical Association of <i>Mrhl</i> RNA). p68 interacted with <i>mrhl</i> RNA in chromatin at these GRPAM loci. p68 silencing drastically reduced <i>mrhl</i> RNA occupancy at 27 GRPAM loci and also perturbed the expression of GRPAM suggesting a role for p68 mediated <i>mrhl</i> RNA occupancy in regulating GRPAM expression. Wnt3a ligand treatment of Gc1-Spg cells down regulated <i>mrhl</i> RNA expression and also perturbed expression of these 27 GRPAM genes that included genes regulating Wnt signaling pathway and spermatogenesis, one of them being Sox8, a developmentally important transcription factor. We also identified interacting proteins of <i>mrhl</i> RNA associated chromatin fraction which included Pc4, a chromatin organizer protein and hnRNP A/B and hnRNP A2/B1 which have been shown to be associated with lincRNA-Cox2 function in gene regulation. Our findings in the Gc1-Spg cell line also correlate with the results from analysis of mouse testicular tissue which further highlights the <i>in vivo</i> physiological significance of <i>mrhl</i> RNA in the context of gene regulation during mammalian spermatogenesis.
DOI: 10.6084/m9.figshare.1288861.v2
title: Loss of <i>Atg12</i>, but not <i>Atg5</i>, in pro-opiomelanocortin neurons exacerbates diet-induced obesity

description: The autophagy-related proteins ATG12 and ATG5 form a covalent complex essential for autophagy. Here, we demonstrate that ATG12 has distinct functions from ATG5 in pro-opiomelanocortin (POMC)-expressing neurons. Upon high-fat diet (HFD) consumption, mice lacking <i>Atg12</i> in POMC-positive neurons exhibit accelerated weight gain, adiposity, and glucose intolerance, which is associated with increased food intake, reduced ambulation, and decreased LEP/leptin sensitivity. Importantly, although genetic deletion of either <i>Atg12</i> or <i>Atg5</i> renders POMC neurons autophagy-deficient, mice lacking <i>Atg5</i> in POMC neurons do not exhibit these phenotypes. Hence, we propose nonautophagic functions for ATG12 in POMC neurons that counteract excessive weight gain in response to HFD consumption.
DOI: 10.6084/m9.figshare.1288864.v3
title: Genome wide chromatin occupancy of <i>mrhl</i> RNA and its role in gene regulation in mouse spermatogonial cells

description: <i>Mrhl</i> RNA is a nuclear lncRNA encoded in the mouse genome and negatively regulates Wnt signaling in spermatogonial cells through p68/Ddx5 RNA helicase. <i>Mrhl</i> RNA is present in the chromatin fraction of mouse spermatogonial Gc1-Spg cells and genome wide chromatin occupancy of <i>mrhl</i> RNA by ChOP (Chromatin oligo affinity precipitation) technique identified 1370 statistically significant genomic loci. Among these, genes at 37 genomic loci also showed altered expression pattern upon <i>mrhl</i> RNA down regulation which are referred to as GRPAM (Genes Regulated by Physical Association of <i>Mrhl</i> RNA). p68 interacted with <i>mrhl</i> RNA in chromatin at these GRPAM loci. p68 silencing drastically reduced <i>mrhl</i> RNA occupancy at 27 GRPAM loci and also perturbed the expression of GRPAM suggesting a role for p68 mediated <i>mrhl</i> RNA occupancy in regulating GRPAM expression. Wnt3a ligand treatment of Gc1-Spg cells down regulated <i>mrhl</i> RNA expression and also perturbed expression of these 27 GRPAM genes that included genes regulating Wnt signaling pathway and spermatogenesis, one of them being Sox8, a developmentally important transcription factor. We also identified interacting proteins of <i>mrhl</i> RNA associated chromatin fraction which included Pc4, a chromatin organizer protein and hnRNP A/B and hnRNP A2/B1 which have been shown to be associated with lincRNA-Cox2 function in gene regulation. Our findings in the Gc1-Spg cell line also correlate with the results from analysis of mouse testicular tissue which further highlights the <i>in vivo</i> physiological significance of <i>mrhl</i> RNA in the context of gene regulation during mammalian spermatogenesis.
DOI: 10.6084/m9.figshare.1288861.v1
title: Loss of <i>Atg12</i>, but not <i>Atg5</i>, in pro-opiomelanocortin neurons exacerbates diet-induced obesity

description: The autophagy-related proteins ATG12 and ATG5 form a covalent complex essential for autophagy. Here, we demonstrate that ATG12 has distinct functions from ATG5 in pro-opiomelanocortin (POMC)-expressing neurons. Upon high-fat diet (HFD) consumption, mice lacking <i>Atg12</i> in POMC-positive neurons exhibit accelerated weight gain, adiposity, and glucose intolerance, which is associated with increased food intake, reduced ambulation, and decreased LEP/leptin sensitivity. Importantly, although genetic deletion of either <i>Atg12</i> or <i>Atg5</i> renders POMC neurons autophagy-deficient, mice lacking <i>Atg5</i> in POMC neurons do not exhibit these phenotypes. Hence, we propose nonautophagic functions for ATG12 in POMC neurons that counteract excessive weight gain in response to HFD consumption.
DOI: 10.6084/m9.figshare.1288864.v2
title: Genome wide chromatin occupancy of <i>mrhl</i> RNA and its role in gene regulation in mouse spermatogonial cells

description: <i>Mrhl</i> RNA is a nuclear lncRNA encoded in the mouse genome and negatively regulates Wnt signaling in spermatogonial cells through p68/Ddx5 RNA helicase. <i>Mrhl</i> RNA is present in the chromatin fraction of mouse spermatogonial Gc1-Spg cells and genome wide chromatin occupancy of <i>mrhl</i> RNA by ChOP (Chromatin oligo affinity precipitation) technique identified 1370 statistically significant genomic loci. Among these, genes at 37 genomic loci also showed altered expression pattern upon <i>mrhl</i> RNA down regulation which are referred to as GRPAM (Genes Regulated by Physical Association of <i>Mrhl</i> RNA). p68 interacted with <i>mrhl</i> RNA in chromatin at these GRPAM loci. p68 silencing drastically reduced <i>mrhl</i> RNA occupancy at 27 GRPAM loci and also perturbed the expression of GRPAM suggesting a role for p68 mediated <i>mrhl</i> RNA occupancy in regulating GRPAM expression. Wnt3a ligand treatment of Gc1-Spg cells down regulated <i>mrhl</i> RNA expression and also perturbed expression of these 27 GRPAM genes that included genes regulating Wnt signaling pathway and spermatogenesis, one of them being Sox8, a developmentally important transcription factor. We also identified interacting proteins of <i>mrhl</i> RNA associated chromatin fraction which included Pc4, a chromatin organizer protein and hnRNP A/B and hnRNP A2/B1 which have been shown to be associated with lincRNA-Cox2 function in gene regulation. Our findings in the Gc1-Spg cell line also correlate with the results from analysis of mouse testicular tissue which further highlights the <i>in vivo</i> physiological significance of <i>mrhl</i> RNA in the context of gene regulation during mammalian spermatogenesis.
DOI: 10.6084/m9.figshare.1288858
title: Linear measurements of insectivore mammals

description: Linear measurements of insectivore mammals' skulls and mandibles. Full descriptions of the measurements and the museum accession numbers can be found in the data_appendix tex file within my MSc thesis (link to the GitHub repository is below)
DOI: 10.6084/m9.figshare.1288856
title: Linear measurements of insectivore mammal limbs

description: Linear measurements of insectivore mammals' limbs. Full descriptions of the measurements and the museum accession numbers of the specimens can be found in the data_appendix tex file within my MSc thesis (link to the GitHub repository is below)
DOI: 10.6084/m9.figshare.1288855
title: Franck-Condon factors (bound-bound) between 3He-4He+ and 3He-4He++

description: Franck-Condon factors and eigenvalues for bound to bound transitions between the helium molecular ion and the helium molecular dication for the case of 3He-4He+ (ion) and 3He-4He++ (dication).<br>Reduced mass of ions 3134.328 in units of electron mass.The eigenvalues are given in atomic units. The potential energies used are described in J. F. Babb and M. L. Du, Chem. Phys. Letters 167 (1990), 273. doi:10.1016/0009-2614(90)87167-P
DOI: 10.6084/m9.figshare.1288856.v1
title: Linear measurements of insectivore mammal limbs

description: Linear measurements of insectivore mammals' limbs. Full descriptions of the measurements and the museum accession numbers of the specimens can be found in the data_appendix tex file within my MSc thesis (link to the GitHub repository is below)
DOI: 10.6084/m9.figshare.1288858.v2
title: Linear measurements of insectivore mammals

description: Linear measurements of insectivore mammals' skulls and mandibles. Full descriptions of the measurements and the museum accession numbers can be found in the data_appendix tex file within my MSc thesis (link to the GitHub repository is below)