cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48597/hubk-9udv
title: Methane at Zeppelin mountain (Ny-Ålesund)

description: Measurement of Methane at Zeppelin mountain (Ny-Ålesund)
DOI: 10.48597/j866-scs4
title: Copper at Koksijde

description: Measurement of Copper at Koksijde
DOI: 10.48597/jb6x-pczu
title: Particle_number_size_distribution at Hohenpeissenberg

description: Measurement of Particle_number_size_distribution at Hohenpeissenberg
DOI: 10.48597/jm2n-a47r
title: Particle_number_size_distribution at Hohenpeissenberg

description: Measurement of Particle_number_size_distribution at Hohenpeissenberg
DOI: 10.48597/k9bw-9fj6
title: Particle_number_size_distribution at Hohenpeissenberg

description: Measurement of Particle_number_size_distribution at Hohenpeissenberg
DOI: 10.48597/kdy6-t2d4
title: Pp_DDD at Koksijde

description: Measurement of Pp_DDD at Koksijde
DOI: 10.48597/kf2t-5rzc
title: Op_DDT at Koksijde

description: Measurement of Op_DDT at Koksijde
DOI: 10.48597/khtz-nunc
title: Particle_number_size_distribution at Hohenpeissenberg

description: Measurement of Particle_number_size_distribution at Hohenpeissenberg
DOI: 10.48597/kj3w-rj66
title: Precipitation_amount at Koksijde

description: Measurement of Precipitation_amount at Koksijde
DOI: 10.48597/m3gz-djvt
title: Particle_number_size_distribution at Hohenpeissenberg

description: Measurement of Particle_number_size_distribution at Hohenpeissenberg
DOI: 10.48597/m8ek-ztq7
title: Calcium at Koksijde

description: Measurement of Calcium at Koksijde
DOI: 10.48597/n99y-crpf
title: Particle_number_size_distribution at Hohenpeissenberg

description: Measurement of Particle_number_size_distribution at Hohenpeissenberg
DOI: 10.48597/neev-c439
title: Particle_number_size_distribution at Hohenpeissenberg

description: Measurement of Particle_number_size_distribution at Hohenpeissenberg
DOI: 10.48597/nr98-rrv9
title: Particle_number_size_distribution at Hohenpeissenberg

description: Measurement of Particle_number_size_distribution at Hohenpeissenberg
DOI: 10.48597/nr9m-c5cp
title: Ammonium at Koksijde

description: Measurement of Ammonium at Koksijde
DOI: 10.48597/nugq-5z7q
title: Particle_number_size_distribution at Hohenpeissenberg

description: Measurement of Particle_number_size_distribution at Hohenpeissenberg
DOI: 10.48597/pnez-mvuq
title: Precipitation_amount at Koksijde

description: Measurement of Precipitation_amount at Koksijde
DOI: 10.48597/qb8q-75u3
title: Particle_number_size_distribution at Hohenpeissenberg

description: Measurement of Particle_number_size_distribution at Hohenpeissenberg
DOI: 10.48597/qd7a-ym6h
title: Particle_number_size_distribution at Hohenpeissenberg

description: Measurement of Particle_number_size_distribution at Hohenpeissenberg
DOI: 10.48597/qkag-38fz
title: Chromium at Koksijde

description: Measurement of Chromium at Koksijde
DOI: 10.48597/qkhr-b75u
title: Particle_number_size_distribution at Hohenpeissenberg

description: Measurement of Particle_number_size_distribution at Hohenpeissenberg
DOI: 10.6084/m9.figshare.5743650
title: A Prechop Technique Using a Reverse Chopper

description: <i>Purpose</i>: To describe a manual prechop technique for splitting the nucleus of the lens using a recently developed reverse chopper. <i>Methods</i>: During the process, the reverse chopper and the Nagahara chopper are placed diagonally in the peripheral area of the nucleus of the lens after capsulorhexis. The reverse chopper and the Nagahara chopper then are pushed horizontally toward each other so they meet at the center of the lens to split the nucleus of lens into 2 parts. <i>Results</i>: In all cases, the reverse chopper was effective during the prechop procedure for hard nuclei, the nucleus of the lens remained <i>in situ</i> during the chopping process, and the reverse chopper did not retract the suspensory ligament in patients in whom the ligament was fragile. During the prechop procedure, no capsule breakage occurred, and the time and energy required for effective phacoemulsification were reduced significantly. <i>Conclusions</i>: The prechop technique using the reverse chopper can be applied for cases with grade III–V nuclei, overripe nuclei, and fragile suspensory ligaments. The procedure is simple, and the learning curve is not steep.
DOI: 10.6084/m9.figshare.5743650.v1
title: A Prechop Technique Using a Reverse Chopper

description: <i>Purpose</i>: To describe a manual prechop technique for splitting the nucleus of the lens using a recently developed reverse chopper. <i>Methods</i>: During the process, the reverse chopper and the Nagahara chopper are placed diagonally in the peripheral area of the nucleus of the lens after capsulorhexis. The reverse chopper and the Nagahara chopper then are pushed horizontally toward each other so they meet at the center of the lens to split the nucleus of lens into 2 parts. <i>Results</i>: In all cases, the reverse chopper was effective during the prechop procedure for hard nuclei, the nucleus of the lens remained <i>in situ</i> during the chopping process, and the reverse chopper did not retract the suspensory ligament in patients in whom the ligament was fragile. During the prechop procedure, no capsule breakage occurred, and the time and energy required for effective phacoemulsification were reduced significantly. <i>Conclusions</i>: The prechop technique using the reverse chopper can be applied for cases with grade III–V nuclei, overripe nuclei, and fragile suspensory ligaments. The procedure is simple, and the learning curve is not steep.
DOI: 10.18112/openneuro.ds003846.v2.0.1
title: Prediction Error
DOI: 10.25386/genetics.14132312
title: Supplemental Material for Ban, et al., 2021

description: <b>Supporting figures and tables</b>
DOI: 10.25386/genetics.14132312.v1
title: Supplemental Material for Ban, et al., 2021

description: <b>Supporting figures and tables</b>
DOI: 10.6073/pasta/98c6baff48f1395dcc11de7d999db36d
title: Burn Study Sites Seasonal Biomass and Seasonal and Annual NPP Data for the Net Primary Production Study at the Sevilleta National Wildlife Refuge, New Mexico

description: In 2003, the U.S. Fish and Wildlife Service conducted a prescribed burn over a large part of the northeastern corner of the Sevilleta NWR. This study was designed to look at the effect of fire on above-ground net primary productivity (ANPP) within different vegetation types. Net primary production (NPP) is a fundamental ecological variable that measures rates of carbon consumption and fixation. Estimates of NPP are important in understanding energy flow at a community level as well as spatial and temporal responses to a range of ecological processes. While measures of both below- and above-ground biomass are important in estimating total NPP, this study focuses on above-ground net primary production (ANPP). Above-ground net primary production (ANPP) is equal to the change in plant mass, including loss to death and decomposition, over a given period of time. To measure this change, ANPP is sampled twice a year (spring and fall) for all species in each of three vegetation types. In addition, volumetric measurements are obtained from adjacent areas to build regressions correlating biomass and volume. Three vegetation types were chosen for this study: mixed grass (MG), mixed shrub (MS) and black grama (G). Forty permanent 1m x 1m plots were installed in both burned and unburned sections of each habitat type. The core black grama site included in SEV129 was incorporated into this dataset as an unburned control, so an additional unburned G site was not created. The data for this site is noted as site=G and treatment=C (i.e., control). The original mixed-grass unburned plot caught fire unexpectedly in the fall of 2009 and was subsequently moved to the south. Volumetric measurements are made using vegetation data from permanent plots collected in SEV156, "Burn Study Sites Quadrat Data for the Net Primary Production Study" and regressions correlating biomass and volume constructed using seasonal harvest weights from SEV157, "Net Primary Productivity (NPP) Weight Data."
DOI: 10.6084/m9.figshare.22608070
title: Additional file 4 of Combination of genetic engineering and random mutagenesis for improving production of raw-starch-degrading enzymes in Penicillium oxalicum

description: Additional file 4: Table S1. Differentially expressed genes in engineered Penicillium oxalicum strain GXUR001 relative to TE4-10 cultured on wheat bran plus Avicel as carbon source.
DOI: 10.6084/m9.figshare.6792320
title: Table S2 Significantly enriched pathway of differential expressed circRNAs from Identification and characterization of circular RNAs in Qinchuan cattle testis.

description: Circular RNA (circRNA) is a new class of non-coding RNA that has recently attracted researchers' interest. Studies have demonstrated that circRNA can function as microRNA sponges or competing endogenous RNAs. Although circRNA has been explored in some species and tissues, the genetic basis of testis development and spermatogenesis in cattle remains unknown. We performed ribo-depleted total RNA-Seq to detect circRNA expression profiles of neonatal (one week old) and adult (4 years old) Qinchuan cattle testes. We obtained 91 112 596 and 80 485 868 clean reads and detected 21 753 circRNAs. A total of 4248 circRNAs were significantly differentially expressed between neonatal and adult cattle testes. Among these circRNAs, 2225 were upregulated, and 2023 were downregulated in adult cattle testis. Genomic feature, length distribution and other characteristics of the circRNAs in cattle testis were studied. Moreover, Gene Ontology and KEGG pathway analyses were performed for source genes of circRNAs. These source genes were mainly involved in tight junction, adherens junction, TGFβ signalling pathway and reproduction, such as <i>PIWIL1, DPY19L2, SLC26A8, IFT81, SMC1B, IQCG</i> and <i>TTLL5</i>. CircRNA expression patterns were validated by RT-qPCR. Our discoveries provide a solid foundation for the identification and characterization of key circRNAs involved in testis development or spermatogenesis.
DOI: 10.6084/m9.figshare.6792320.v2
title: Table S2 Significantly enriched pathway of differential expressed circRNAs from Identification and characterization of circular RNAs in Qinchuan cattle testis.

description: Circular RNA (circRNA) is a new class of non-coding RNA that has recently attracted researchers' interest. Studies have demonstrated that circRNA can function as microRNA sponges or competing endogenous RNAs. Although circRNA has been explored in some species and tissues, the genetic basis of testis development and spermatogenesis in cattle remains unknown. We performed ribo-depleted total RNA-Seq to detect circRNA expression profiles of neonatal (one week old) and adult (4 years old) Qinchuan cattle testes. We obtained 91 112 596 and 80 485 868 clean reads and detected 21 753 circRNAs. A total of 4248 circRNAs were significantly differentially expressed between neonatal and adult cattle testes. Among these circRNAs, 2225 were upregulated, and 2023 were downregulated in adult cattle testis. Genomic feature, length distribution and other characteristics of the circRNAs in cattle testis were studied. Moreover, Gene Ontology and KEGG pathway analyses were performed for source genes of circRNAs. These source genes were mainly involved in tight junction, adherens junction, TGFβ signalling pathway and reproduction, such as <i>PIWIL1, DPY19L2, SLC26A8, IFT81, SMC1B, IQCG</i> and <i>TTLL5</i>. CircRNA expression patterns were validated by RT-qPCR. Our discoveries provide a solid foundation for the identification and characterization of key circRNAs involved in testis development or spermatogenesis.
DOI: 10.6084/m9.figshare.6792320.v1
title: Table S2 Significantly enriched pathway of differential expressed circRNAs. from Identification and characterization of circular RNAs in Qinchuan cattle testis

description: Circular RNA (circRNA) is a new class of non-coding RNA that has recently attracted researchers' interests. Studies have demonstrated that circRNA can function as microRNA (miRNA) sponges or competing endogenous RNAs. Although circRNA has been explored in some species and tissues, the genetic basic of testis development and spermatogenesis in cattle remains unknown. We performed ribo-depleted total RNA-Seq to detect circRNA expression profiles of neonatal (one week old) and adult (4 years old) Qinchuan cattle testes. We obtained 91 112 596 and 80 485 868 clean reads and detected 21 753 circRNAs. A total of 4248 circRNAs were significantly differentially expressed between neonatal and adult cattle testes. Among these circRNAs, 2225 were upregulated, and 2023 were downregulated in adult cattle testis. Genomic feature, length distribution and other characteristics of the circRNAs in cattle testis were studied. Moreover, Gene Ontology and KEGG pathway analyses were performed for source genes of circRNAs. These source genes were mainly involved in tight junction, adherens junction, TGFβ signalling pathway and reproduction, such as <i>PIWIL1, DPY19L2, SLC26A8, IFT81, SMC1B, IQCG</i> and <i>TTLL5</i>. CircRNA expression patterns were validated by RT-qPCR. Our discoveries provide a solid foundation for the identification and characterization of key circRNAs involved in testis development or spermatogenesis.
DOI: 10.6084/m9.figshare.6792323
title: Table S3 List of 8 validated testis derived circRNAs from Identification and characterization of circular RNAs in Qinchuan cattle testis.

description: Circular RNA (circRNA) is a new class of non-coding RNA that has recently attracted researchers' interest. Studies have demonstrated that circRNA can function as microRNA sponges or competing endogenous RNAs. Although circRNA has been explored in some species and tissues, the genetic basis of testis development and spermatogenesis in cattle remains unknown. We performed ribo-depleted total RNA-Seq to detect circRNA expression profiles of neonatal (one week old) and adult (4 years old) Qinchuan cattle testes. We obtained 91 112 596 and 80 485 868 clean reads and detected 21 753 circRNAs. A total of 4248 circRNAs were significantly differentially expressed between neonatal and adult cattle testes. Among these circRNAs, 2225 were upregulated, and 2023 were downregulated in adult cattle testis. Genomic feature, length distribution and other characteristics of the circRNAs in cattle testis were studied. Moreover, Gene Ontology and KEGG pathway analyses were performed for source genes of circRNAs. These source genes were mainly involved in tight junction, adherens junction, TGFβ signalling pathway and reproduction, such as <i>PIWIL1, DPY19L2, SLC26A8, IFT81, SMC1B, IQCG</i> and <i>TTLL5</i>. CircRNA expression patterns were validated by RT-qPCR. Our discoveries provide a solid foundation for the identification and characterization of key circRNAs involved in testis development or spermatogenesis.
DOI: 10.6084/m9.figshare.6792323.v2
title: Table S3 List of 8 validated testis derived circRNAs from Identification and characterization of circular RNAs in Qinchuan cattle testis.

description: Circular RNA (circRNA) is a new class of non-coding RNA that has recently attracted researchers' interest. Studies have demonstrated that circRNA can function as microRNA sponges or competing endogenous RNAs. Although circRNA has been explored in some species and tissues, the genetic basis of testis development and spermatogenesis in cattle remains unknown. We performed ribo-depleted total RNA-Seq to detect circRNA expression profiles of neonatal (one week old) and adult (4 years old) Qinchuan cattle testes. We obtained 91 112 596 and 80 485 868 clean reads and detected 21 753 circRNAs. A total of 4248 circRNAs were significantly differentially expressed between neonatal and adult cattle testes. Among these circRNAs, 2225 were upregulated, and 2023 were downregulated in adult cattle testis. Genomic feature, length distribution and other characteristics of the circRNAs in cattle testis were studied. Moreover, Gene Ontology and KEGG pathway analyses were performed for source genes of circRNAs. These source genes were mainly involved in tight junction, adherens junction, TGFβ signalling pathway and reproduction, such as <i>PIWIL1, DPY19L2, SLC26A8, IFT81, SMC1B, IQCG</i> and <i>TTLL5</i>. CircRNA expression patterns were validated by RT-qPCR. Our discoveries provide a solid foundation for the identification and characterization of key circRNAs involved in testis development or spermatogenesis.
DOI: 10.6084/m9.figshare.6792329
title: Table S1 CircRNAs differentially expressed in neonatal and adult cattle testis from Identification and characterization of circular RNAs in Qinchuan cattle testis.

description: Circular RNA (circRNA) is a new class of non-coding RNA that has recently attracted researchers' interest. Studies have demonstrated that circRNA can function as microRNA sponges or competing endogenous RNAs. Although circRNA has been explored in some species and tissues, the genetic basis of testis development and spermatogenesis in cattle remains unknown. We performed ribo-depleted total RNA-Seq to detect circRNA expression profiles of neonatal (one week old) and adult (4 years old) Qinchuan cattle testes. We obtained 91 112 596 and 80 485 868 clean reads and detected 21 753 circRNAs. A total of 4248 circRNAs were significantly differentially expressed between neonatal and adult cattle testes. Among these circRNAs, 2225 were upregulated, and 2023 were downregulated in adult cattle testis. Genomic feature, length distribution and other characteristics of the circRNAs in cattle testis were studied. Moreover, Gene Ontology and KEGG pathway analyses were performed for source genes of circRNAs. These source genes were mainly involved in tight junction, adherens junction, TGFβ signalling pathway and reproduction, such as <i>PIWIL1, DPY19L2, SLC26A8, IFT81, SMC1B, IQCG</i> and <i>TTLL5</i>. CircRNA expression patterns were validated by RT-qPCR. Our discoveries provide a solid foundation for the identification and characterization of key circRNAs involved in testis development or spermatogenesis.
DOI: 10.6084/m9.figshare.6792329.v2
title: Table S1 CircRNAs differentially expressed in neonatal and adult cattle testis from Identification and characterization of circular RNAs in Qinchuan cattle testis.

description: Circular RNA (circRNA) is a new class of non-coding RNA that has recently attracted researchers' interest. Studies have demonstrated that circRNA can function as microRNA sponges or competing endogenous RNAs. Although circRNA has been explored in some species and tissues, the genetic basis of testis development and spermatogenesis in cattle remains unknown. We performed ribo-depleted total RNA-Seq to detect circRNA expression profiles of neonatal (one week old) and adult (4 years old) Qinchuan cattle testes. We obtained 91 112 596 and 80 485 868 clean reads and detected 21 753 circRNAs. A total of 4248 circRNAs were significantly differentially expressed between neonatal and adult cattle testes. Among these circRNAs, 2225 were upregulated, and 2023 were downregulated in adult cattle testis. Genomic feature, length distribution and other characteristics of the circRNAs in cattle testis were studied. Moreover, Gene Ontology and KEGG pathway analyses were performed for source genes of circRNAs. These source genes were mainly involved in tight junction, adherens junction, TGFβ signalling pathway and reproduction, such as <i>PIWIL1, DPY19L2, SLC26A8, IFT81, SMC1B, IQCG</i> and <i>TTLL5</i>. CircRNA expression patterns were validated by RT-qPCR. Our discoveries provide a solid foundation for the identification and characterization of key circRNAs involved in testis development or spermatogenesis.
DOI: 10.6084/m9.figshare.6792329.v1
title: Table S1 CircRNAs differentially expressed in neonatal and adult cattle testis. from Identification and characterization of circular RNAs in Qinchuan cattle testis

description: Circular RNA (circRNA) is a new class of non-coding RNA that has recently attracted researchers' interests. Studies have demonstrated that circRNA can function as microRNA (miRNA) sponges or competing endogenous RNAs. Although circRNA has been explored in some species and tissues, the genetic basic of testis development and spermatogenesis in cattle remains unknown. We performed ribo-depleted total RNA-Seq to detect circRNA expression profiles of neonatal (one week old) and adult (4 years old) Qinchuan cattle testes. We obtained 91 112 596 and 80 485 868 clean reads and detected 21 753 circRNAs. A total of 4248 circRNAs were significantly differentially expressed between neonatal and adult cattle testes. Among these circRNAs, 2225 were upregulated, and 2023 were downregulated in adult cattle testis. Genomic feature, length distribution and other characteristics of the circRNAs in cattle testis were studied. Moreover, Gene Ontology and KEGG pathway analyses were performed for source genes of circRNAs. These source genes were mainly involved in tight junction, adherens junction, TGFβ signalling pathway and reproduction, such as <i>PIWIL1, DPY19L2, SLC26A8, IFT81, SMC1B, IQCG</i> and <i>TTLL5</i>. CircRNA expression patterns were validated by RT-qPCR. Our discoveries provide a solid foundation for the identification and characterization of key circRNAs involved in testis development or spermatogenesis.
DOI: 10.6084/m9.figshare.13083306
title: Additional file 5 of Comparative transcriptome analysis reveals that PCK1 is a potential gene affecting IMF deposition in buffalo

description: Additional file 5: Table S4. Differentially expressed genes between buffalo and cattle in the longissimus dorsi muscle specific mRNAs.
DOI: 10.6084/m9.figshare.13083306.v1
title: Additional file 5 of Comparative transcriptome analysis reveals that PCK1 is a potential gene affecting IMF deposition in buffalo

description: Additional file 5: Table S4. Differentially expressed genes between buffalo and cattle in the longissimus dorsi muscle specific mRNAs.
DOI: 10.48597/qnvx-tn5t
title: Zinc at Koksijde

description: Measurement of Zinc at Koksijde
DOI: 10.48597/qt26-mn7z
title: Cadmium at Koksijde

description: Measurement of Cadmium at Koksijde
DOI: 10.48597/r3nr-cftx
title: Particle_number_size_distribution at Hohenpeissenberg

description: Measurement of Particle_number_size_distribution at Hohenpeissenberg
DOI: 10.48597/r8ms-kkza
title: Copper at Koksijde

description: Measurement of Copper at Koksijde
DOI: 10.48597/rk25-56qu
title: Particle_number_size_distribution at Hohenpeissenberg

description: Measurement of Particle_number_size_distribution at Hohenpeissenberg
DOI: 10.48597/rmrp-wqgg
title: Particle_number_size_distribution at Hohenpeissenberg

description: Measurement of Particle_number_size_distribution at Hohenpeissenberg
DOI: 10.48597/rsa7-8z6x
title: Inorganics in air and particle phase at Westerland

description: Measurement of Inorganics in air and particle phase at Westerland
DOI: 10.6084/m9.figshare.20423882.v1
title: Additional file 2 of Use of folic acid supplementation to halt and even reverse the progression of gastric precancerous conditions: a meta-analysis

description: Additional file 2: Table 2: Description of included studies.
DOI: 10.48597/rwab-8v6b
title: Manganese at Koksijde

description: Measurement of Manganese at Koksijde
DOI: 10.48597/rxvb-vr7a
title: Particle_number_size_distribution at Hohenpeissenberg

description: Measurement of Particle_number_size_distribution at Hohenpeissenberg
DOI: 10.48597/sah2-rnfz
title: Particle_number_size_distribution at Hohenpeissenberg

description: Measurement of Particle_number_size_distribution at Hohenpeissenberg
DOI: 10.48597/syzs-72mh
title: Particle_number_size_distribution at Hohenpeissenberg

description: Measurement of Particle_number_size_distribution at Hohenpeissenberg
DOI: 10.48597/t2mx-8nbe
title: Carbon_dioxide at Westerland

description: Measurement of Carbon_dioxide at Westerland
DOI: 10.48597/t8mw-7n4n
title: Nickel at Koksijde

description: Measurement of Nickel at Koksijde
DOI: 10.48597/t9zv-qy6k
title: Nickel at Koksijde

description: Measurement of Nickel at Koksijde
DOI: 10.48597/tb63-3gz9
title: Heavy metals at Zingst

description: Measurement of Heavy metals at Zingst