cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.1612235_d55.v1
title: Conf 2.0 Confuciusornis original 16bit data resampled as cubic voxels

description: Confuciusornis original 16bit data, resampled as cubic voxels
1295 slices; TIF format; 302 - 567 Kb each
Voxel dimension X = 0.2148 mm
Voxel dimension Y = 0.2148 mm
Voxel dimension Z = 0.2148 mm
These data are 16bit unleveled TIFF files and may appear black in some image viewers (see Usage Notes)
DOI: 10.6084/m9.figshare.c.1612235_d58.v1
title: Confuciusornis slice movie YZ plane

description: Confuciusornis slice stack; slice-by-slice movie through YZ plane; MP4 format; 5 MB.
DOI: 10.6084/m9.figshare.c.1612235_d18.v1
title: Confuciusornis slab movie roll

description: Confuciusornis 3D roll movie of entire slab; MP4 format; 883.16 kB
DOI: 10.6084/m9.figshare.c.1612235_d61.v1
title: Confuciusornis slice movie XZ plane

description: Confuciusornis slice stack; slice-by-slice movie through XZ plane; MP4 format; 3.71 Mb.
DOI: 10.6084/m9.figshare.c.1612235_d62.v1
title: Confuciusornis slice movie XY plane

description: Confuciusornis slice stack; slice-by-slice movie through XY plane; MP4 format; 1.94Mb.
DOI: 10.6084/m9.figshare.c.1612235_d19.v1
title: Confuciusornis skeleton movie roll

description: Confuciusornis 3D roll movie of skeleton; matrix digitally removed; MP4 format; 1.08 Mb.
DOI: 10.6084/m9.figshare.c.3937726_d1.v1
title: Additional file 10: Table S10. of Identification of differentially expressed genes in flower, leaf and bulb scale of Lilium oriental hybrid â  Sorbonneâ   and putative control network for scent genes

description: Differentially expressed genes involved in metabolism of starch and sucrose. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3937726_d1
title: Additional file 10: Table S10. of Identification of differentially expressed genes in flower, leaf and bulb scale of Lilium oriental hybrid â  Sorbonneâ   and putative control network for scent genes

description: Differentially expressed genes involved in metabolism of starch and sucrose. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3936769_d5.v1
title: Additional file 5: of Suppression of microRNA159 impacts multiple agronomic traits in rice (Oryza sativa L.)

description: Up-regulated genes in STTM159 detected by RNA-seq. (XLSX 150 kb)
DOI: 10.6084/m9.figshare.c.3936769_d5
title: Additional file 5: of Suppression of microRNA159 impacts multiple agronomic traits in rice (Oryza sativa L.)

description: Up-regulated genes in STTM159 detected by RNA-seq. (XLSX 150 kb)
DOI: 10.6084/m9.figshare.c.3936769_d4
title: Additional file 4: of Suppression of microRNA159 impacts multiple agronomic traits in rice (Oryza sativa L.)

description: Down-regulated genes in STTM159 detected by RNA-seq. (XLSX 402 kb)
DOI: 10.6084/m9.figshare.c.3936769_d4.v1
title: Additional file 4: of Suppression of microRNA159 impacts multiple agronomic traits in rice (Oryza sativa L.)

description: Down-regulated genes in STTM159 detected by RNA-seq. (XLSX 402 kb)
DOI: 10.15468/dl.xacvm9
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lygodium circinnatum (Burm.fil.) Sw."
 ]
}

 The dataset includes 101 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035707-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xdds37
title: Occurrence Download

description: A dataset containing 206 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lophius litulon (Jordan, 1902)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 206 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035706-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zfdqv
title: Occurrence Download

description: A dataset containing 145560 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "Geometry POLYGON ((117.7288 -34.77505, 118.6271 -34.77505, 118.6271 -33.87673, 117.7288 -33.87673, 117.7288 -34.77505))",
 "Year is less than 2025"
 ]
}

 The dataset includes 145560 records from 172 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035689-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3935455_d1.v1
title: Additional file 1: of Genome-wide identification of conserved and novel microRNAs in one bud and two tender leaves of tea plant (Camellia sinensis) by small RNA sequencing, microarray-based hybridization and genome survey scaffold sequences

description: List of conserved csn-miRNAs identified by HTS in Camellia sinensis. (XLS 127Â kb)
DOI: 10.6084/m9.figshare.c.3935455_d1
title: Additional file 1: of Genome-wide identification of conserved and novel microRNAs in one bud and two tender leaves of tea plant (Camellia sinensis) by small RNA sequencing, microarray-based hybridization and genome survey scaffold sequences

description: List of conserved csn-miRNAs identified by HTS in Camellia sinensis. (XLS 127Â kb)
DOI: 10.6084/m9.figshare.c.3935359_d12.v1
title: Additional file 9: Table S6.

description: GO statistics of Camellia sinensis known miRNAs during drought stress. (XLS 32 kb)
DOI: 10.6084/m9.figshare.c.3935359_d12
title: Additional file 9: Table S6.

description: GO statistics of Camellia sinensis known miRNAs during drought stress. (XLS 32 kb)
DOI: 10.6084/m9.figshare.c.3935359_d9
title: Additional file 6: Table S5. of Identification of drought-responsive miRNAs and physiological characterization of tea plant (Camellia sinensis L.) under drought stress

description: Camellia sinensisÂ known miRNAs differentially expressed between normal water supply and severe drought stress (CK vs. T3). (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3935359_d9.v1
title: Additional file 6: Table S5. of Identification of drought-responsive miRNAs and physiological characterization of tea plant (Camellia sinensis L.) under drought stress

description: Camellia sinensisÂ known miRNAs differentially expressed between normal water supply and severe drought stress (CK vs. T3). (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3935359_d8.v1
title: Additional file 5: Table S4. of Identification of drought-responsive miRNAs and physiological characterization of tea plant (Camellia sinensis L.) under drought stress

description: Camellia sinensisÂ known miRNAs differentially expressed between normal water supply and moderate drought stress (CK vs. T2). (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3935359_d8
title: Additional file 5: Table S4. of Identification of drought-responsive miRNAs and physiological characterization of tea plant (Camellia sinensis L.) under drought stress

description: Camellia sinensisÂ known miRNAs differentially expressed between normal water supply and moderate drought stress (CK vs. T2). (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3933928_d1.v1
title: Additional file 1: of Near work, outdoor activity, and myopia in children in rural China: the Handan offspring myopia study

description: Dataset. (XLS 112Â kb)
DOI: 10.6084/m9.figshare.c.3933928_d1
title: Additional file 1: of Near work, outdoor activity, and myopia in children in rural China: the Handan offspring myopia study

description: Dataset. (XLS 112Â kb)
DOI: 10.6084/m9.figshare.c.3933925_d1.v1
title: Additional file 1: Table S1. of Whole-exome sequencing in amyotrophic lateral sclerosis suggests NEK1 is a risk gene in Chinese

description: Detailed information of samples. Table S2. Analysis of rare coding variants. Table S3. Description and summary of quality control steps of whole-exome sequencing samples. Table S4. Exome sequencing coverage in genes included in the WES analyses. Table S5. Gene-based SKAT-O association test p-values and per gene counts of WES variants that passed filtering steps. Table S6. Gene-based Cochranâ  Mantelâ  Haenszel association test results based on WES variant counts in Chinese and Europeans. Table S7. Previously reported variants that are likely causal for ALS identified in individuals in our study. Table S8. NEK1, SOD1, TBK1 variants identified in SKAT-O and/or ALS specific variant/gene testing. Table S9. Not previously reported variants of probable/possible/unknown significance in ALS-related genes identified in at least one individual in our study. Table S10. Individuals identified with two or more variants considered relevant for ALS (oligogenic). Table S11. Previously reported variants that are unlikely causal (due to high minor allele frequency) identified in individuals in our study. (XLSX 7252 kb)
DOI: 10.6084/m9.figshare.c.3933925_d1
title: Additional file 1: Table S1. of Whole-exome sequencing in amyotrophic lateral sclerosis suggests NEK1 is a risk gene in Chinese

description: Detailed information of samples. Table S2. Analysis of rare coding variants. Table S3. Description and summary of quality control steps of whole-exome sequencing samples. Table S4. Exome sequencing coverage in genes included in the WES analyses. Table S5. Gene-based SKAT-O association test p-values and per gene counts of WES variants that passed filtering steps. Table S6. Gene-based Cochranâ  Mantelâ  Haenszel association test results based on WES variant counts in Chinese and Europeans. Table S7. Previously reported variants that are likely causal for ALS identified in individuals in our study. Table S8. NEK1, SOD1, TBK1 variants identified in SKAT-O and/or ALS specific variant/gene testing. Table S9. Not previously reported variants of probable/possible/unknown significance in ALS-related genes identified in at least one individual in our study. Table S10. Individuals identified with two or more variants considered relevant for ALS (oligogenic). Table S11. Previously reported variants that are unlikely causal (due to high minor allele frequency) identified in individuals in our study. (XLSX 7252 kb)
DOI: 10.6084/m9.figshare.c.3933922_d1.v1
title: Additional file 1 of Analytical performance of Envisia: a genomic classifier for usual interstitial pneumonia

description: RNA-seq raw counts of samples used in Envisia analytical verification studies. This file includes the raw expression counts of 190 classifier genes across all samples (n=292) used in the analytical verification studies described in this manuscript; each row represents a gene and each column represents a sample. (CSV 199 kb)
DOI: 10.6084/m9.figshare.c.3933922_d1
title: Additional file 1 of Analytical performance of Envisia: a genomic classifier for usual interstitial pneumonia

description: RNA-seq raw counts of samples used in Envisia analytical verification studies. This file includes the raw expression counts of 190 classifier genes across all samples (n=292) used in the analytical verification studies described in this manuscript; each row represents a gene and each column represents a sample. (CSV 199 kb)
DOI: 10.15468/dl.3s8pmj
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lophiomus litulon Jordan, 1902",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035708-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bmgx57
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "TaxonKey is Blechnum egregium Copel."
 ]
}

 The dataset includes 98 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035709-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25906404
title: 3D printing: trends and approaches toward achieving long-term sustainability in the food industry

description: Global food security has recently been under serious threat from the rapid rise in the world’s population, the problems brought on by climate change, and the appearance of new pandemics. As a result, the need for novel and innovative solutions to solve the existing problems and improve food sustainability has become crucial. 3D printing is expected to play a significant role in providing tangible contributions to the food industry in achieving sustainable development goals. The 3D food printing holds the potential to produce highly customized food in terms of shape, texture, flavor, structure and nutritional value and enable us to create new unique formulations and edible alternatives. The problem of whether the cost of the printed meal and 3D printing itself can be sustainably produced is becoming more and more important due to global concerns. This review intends to provide a comprehensive overview of 3D printed foods with an overview of the current printing methodologies, illustrating the technology’s influencing factors, and its applications in personalized nutrition, packaging, value addition, and valorization aspects to fully integrate sustainability concerns thus exploring the potential of 3D food printing.
DOI: 10.6084/m9.figshare.25906404.v1
title: 3D printing: trends and approaches toward achieving long-term sustainability in the food industry

description: Global food security has recently been under serious threat from the rapid rise in the world’s population, the problems brought on by climate change, and the appearance of new pandemics. As a result, the need for novel and innovative solutions to solve the existing problems and improve food sustainability has become crucial. 3D printing is expected to play a significant role in providing tangible contributions to the food industry in achieving sustainable development goals. The 3D food printing holds the potential to produce highly customized food in terms of shape, texture, flavor, structure and nutritional value and enable us to create new unique formulations and edible alternatives. The problem of whether the cost of the printed meal and 3D printing itself can be sustainably produced is becoming more and more important due to global concerns. This review intends to provide a comprehensive overview of 3D printed foods with an overview of the current printing methodologies, illustrating the technology’s influencing factors, and its applications in personalized nutrition, packaging, value addition, and valorization aspects to fully integrate sustainability concerns thus exploring the potential of 3D food printing.
DOI: 10.15468/dl.6s78pf
title: Occurrence Download

description: A dataset containing 178 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Metapenaeopsis dalei (M.J.Rathbun, 1902)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 178 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035710-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3937795_d1.v1
title: MOESM1 of Efficient conformational ensemble generation of protein-bound peptides

description: Additional file 1. The average accuracies and standard deviations of MODPEP for the peptides of 3â  30 amino acids on ten randomly splitted training/test sets.
DOI: 10.6084/m9.figshare.c.3937795_d1
title: MOESM1 of Efficient conformational ensemble generation of protein-bound peptides

description: Additional file 1. The average accuracies and standard deviations of MODPEP for the peptides of 3â  30 amino acids on ten randomly splitted training/test sets.
DOI: 10.15468/dl.zj7zzs
title: Occurrence Download

description: A dataset containing 168 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epinephelus akaara (Temminck & Schlegel, 1842)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 168 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035711-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3938494_d1
title: Additional file 1: Table S1. of Genetic relatedness of Vibrio cholerae isolates within and between households during outbreaks in Dhaka, Bangladesh

description: Genome Metadata. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3938494_d2
title: Additional file 2: Table S2. of Genetic relatedness of Vibrio cholerae isolates within and between households during outbreaks in Dhaka, Bangladesh

description: SNP List of Chromosomes and Genes using reference 300,043. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3938494_d2.v1
title: Additional file 2: Table S2. of Genetic relatedness of Vibrio cholerae isolates within and between households during outbreaks in Dhaka, Bangladesh

description: SNP List of Chromosomes and Genes using reference 300,043. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3938503_d1.v1
title: Additional file 1: of Influence of age on results following surgery for displaced acetabular fractures in the elderly

description: Detailing patientsâ   data. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3938503_d1
title: Additional file 1: of Influence of age on results following surgery for displaced acetabular fractures in the elderly

description: Detailing patientsâ   data. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3938542_d3
title: Additional file 3: Table S4. of Gene expression of bovine embryos developing at the air-liquid interface on oviductal epithelial cells (ALI-BOEC)

description: Full data set of expression profiles from in vitro derived embryos. (XLS 68 kb)
DOI: 10.6084/m9.figshare.c.3938692_d2
title: Additional file 2: of Multiresistant ST59-SCCmec IV-t437 clone with strong biofilm-forming capacity was identified predominantly in MRSA isolated from Chinese children

description: Raw OD value of all isolates. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3938692_d2.v1
title: Additional file 2: of Multiresistant ST59-SCCmec IV-t437 clone with strong biofilm-forming capacity was identified predominantly in MRSA isolated from Chinese children

description: Raw OD value of all isolates. (XLSX 14Â kb)
DOI: 10.15468/dl.3ajm7t
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epinephelus fasciatomaculosus (Peters, 1865)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035712-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3930475_d11.v1
title: Additional file 9: of Validation of whole-blood transcriptome signature during microdose recombinant human erythropoietin (rHuEpo) administration

description: Adaptive model analysis and ROC curve in HGB concentration (g·L−1) across 28 subjects (14 subjects × 2 trials) in the MDS. Red lines: individual limits as determined by the adaptive model for a specificity of 99%; blue line: actual test results. Subject A, D, F. G, J, K, M, P, R, S, U, X, Z and AA participated in the rHuEpo trial; subject B, C, E, H, I, L, N, O, Q, T, V, W, Y and BB participated in the placebo trial. X-axis: 13 time points and y-axis: HGB concentrations. (ZIP 88 kb)
DOI: 10.6084/m9.figshare.c.3930475_d11
title: Additional file 9: of Validation of whole-blood transcriptome signature during microdose recombinant human erythropoietin (rHuEpo) administration

description: Adaptive model analysis and ROC curve in HGB concentration (g·L−1) across 28 subjects (14 subjects × 2 trials) in the MDS. Red lines: individual limits as determined by the adaptive model for a specificity of 99%; blue line: actual test results. Subject A, D, F. G, J, K, M, P, R, S, U, X, Z and AA participated in the rHuEpo trial; subject B, C, E, H, I, L, N, O, Q, T, V, W, Y and BB participated in the placebo trial. X-axis: 13 time points and y-axis: HGB concentrations. (ZIP 88 kb)
DOI: 10.6084/m9.figshare.c.3930475_d9.v1
title: Additional file 7: of Validation of whole-blood transcriptome signature during microdose recombinant human erythropoietin (rHuEpo) administration

description: Summary of gene expression changes over time in response to altitude exposure in the 12 ATS elite runners for the 41 transcripts. (XLS 37Â kb)
DOI: 10.6084/m9.figshare.c.3930475_d8.v1
title: Additional file 6: of Validation of whole-blood transcriptome signature during microdose recombinant human erythropoietin (rHuEpo) administration

description: Genes differentially expressed immediately following the repeated sprint tests vs. baseline prior to and after the rHuEpo/placebo injection in the MDS, respectively. (XLS 21Â kb)
DOI: 10.6084/m9.figshare.c.3930475_d9
title: Additional file 7: of Validation of whole-blood transcriptome signature during microdose recombinant human erythropoietin (rHuEpo) administration

description: Summary of gene expression changes over time in response to altitude exposure in the 12 ATS elite runners for the 41 transcripts. (XLS 37Â kb)
DOI: 10.6084/m9.figshare.c.3930475_d8
title: Additional file 6: of Validation of whole-blood transcriptome signature during microdose recombinant human erythropoietin (rHuEpo) administration

description: Genes differentially expressed immediately following the repeated sprint tests vs. baseline prior to and after the rHuEpo/placebo injection in the MDS, respectively. (XLS 21Â kb)
DOI: 10.6084/m9.figshare.c.3929101_d20.v1
title: Additional file 8: Table S13. of Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla)

description: Expression of PhIAA family members in response to auxin treatment. (TXT 5Â kb)
DOI: 10.6084/m9.figshare.c.3929101_d20
title: Additional file 8: Table S13. of Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla)

description: Expression of PhIAA family members in response to auxin treatment. (TXT 5Â kb)
DOI: 10.15468/dl.d3sx5r
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epinephelus rivulatus (Valenciennes, 1830)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 26 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035713-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3929101_d19.v1
title: Additional file 7: Table S12. of Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla)

description: Expression of PhAFB family members in response to auxin treatment. (TXT 1Â kb)