cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p9ur522z
title: Simulated net primary productivity and greenhouse gas emissions under various soil salinity and water table depth combinations in low salinity tidal wetlands

description: The dataset contains simulated net primary productivity (NPP) and greenhouse gas emissions (CH4, N2O, CO2) under a series of combinations of soil salinities (0.1, 0.5, 1, 2, 4, 6, 8, 10 psu) and water table depth (WTDs) (-30, -20, -10, -5, 0, 5, 10, 20, 30 cm) for tidal forest and oligohaline marsh sites along the Savannah River and Waccamaw River, USA.
DOI: 10.5281/zenodo.8200963
title: panulirus_homarus_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8200962
title: panulirus_homarus_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8200974
title: panulirus_inflatus_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8200973
title: panulirus_inflatus_zanfona_1.fasta.gz

description: .
DOI: 10.5066/p9qsxt1c
title: Cheatgrass probability of occurrence in the Wyoming Basins Ecoregional Assessment area

description: Probability map of Cheatgrass occurrence in relation to vegetation, abiotic, and anthropogenic features. These data were released prior to the October 1, 2016 effective date for the USGS&amp;amp;amp;rsquo;s policy dictating the review, approval, and release of scientific data as referenced in USGS Survey Manual Chapter 502.8 Fundamental Science Practices: Review and Approval of Scientific Data for Release.
DOI: 10.25573/serc.23811096
title: Data and Code: Methane Reduction Potential of Tidal Wetland Restoration

description: This repository contains code and data files for a publication titled: Mapping Methane Reduction Potential of Tidal Wetland Restoration in the United States.The zip file contains a replicable R workflow that can be implemented using 'Mapping_CONUS_Blue_Carbon_NCS.Rproj' to organize the working directory.scripts: contains 'Python' and 'R' scripts. 'R' scripts or organized into two subfolders: 'analysis' and 'figures', those that are used for analyses presented in the paper, and for creating the figures respectively.Scripts within the 'figures' folder are named by the figure in the text they correspond to.Names of scripts within 'analysis' are self-descriptive, and numbered in order they are described in the materials and methods section of the paper. They need to be run in order since some are dependent on the outputs of others.data: contains CSV and spatial data of intermediate working and finalized files used in the analysis. The 'scripts' folder both reads from and writes to the 'data' folder.figs: contains a folder to which 'scripts' will write files.<br>
DOI: 10.25573/serc.23811096.v1
title: Data and Code: Methane Reduction Potential of Tidal Wetland Restoration

description: This repository contains code and data files for a publication titled: Mapping Methane Reduction Potential of Tidal Wetland Restoration in the United States.The zip file contains a replicable R workflow that can be implemented using 'Mapping_CONUS_Blue_Carbon_NCS.Rproj' to organize the working directory.scripts: contains 'Python' and 'R' scripts. 'R' scripts or organized into two subfolders: 'analysis' and 'figures', those that are used for analyses presented in the paper, and for creating the figures respectively.Scripts within the 'figures' folder are named by the figure in the text they correspond to.Names of scripts within 'analysis' are self-descriptive, and numbered in order they are described in the materials and methods section of the paper. They need to be run in order since some are dependent on the outputs of others.data: contains CSV and spatial data of intermediate working and finalized files used in the analysis. The 'scripts' folder both reads from and writes to the 'data' folder.figs: contains a folder to which 'scripts' will write files.<br>
DOI: 10.6084/m9.figshare.23811705
title: Data From: Coe, M. A.; Gaoue, O. G. 2023. Increased clonal growth in heavily harvested ecosystems failed to rescue ayahuasca lianas from decline in the Peruvian Amazon rainforest. <i>Journal of Applied Ecology.</i>

description: These data were used to develop an IPM and all subsequent analyses in Coe, M.A.; Gaoue, O.G. 2023. Increased clonal growth in heavily harvested ecosystems failed to rescue ayahuasca lianas from decline in the Peruvian Amazon rainforest. <i>Journal of Applied Ecology.</i>
DOI: 10.6084/m9.figshare.23811705.v1
title: Data From: Coe, M. A.; Gaoue, O. G. 2023. Increased clonal growth in heavily harvested ecosystems failed to rescue ayahuasca lianas from decline in the Peruvian Amazon rainforest. <i>Journal of Applied Ecology.</i>

description: These data were used to develop an IPM and all subsequent analyses in Coe, M.A.; Gaoue, O.G. 2023. Increased clonal growth in heavily harvested ecosystems failed to rescue ayahuasca lianas from decline in the Peruvian Amazon rainforest. <i>Journal of Applied Ecology.</i>
DOI: 10.5281/zenodo.8200987
title: panulirus_interruptus_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8200986
title: panulirus_interruptus_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8200983
title: Agonistic effect of peptides derived from a truncated HMGB1 acidic tail sequence in TLR5 from Salmo salar.

description: The data was generated from a study focused on desining peptides derived from a truncated HMGB1 acidic tail from Salmo salar as TLR5 agonists. By blind docking platforms were used to design these peptides, and a template peptide with the native N-terminal of the acidic tail sequence was included as a reference.
DOI: 10.5281/zenodo.8200984
title: Agonistic effect of peptides derived from a truncated HMGB1 acidic tail sequence in TLR5 from Salmo salar.

description: The data was generated from a study focused on desining peptides derived from a truncated HMGB1 acidic tail from Salmo salar as TLR5 agonists. By blind docking platforms were used to design these peptides, and a template peptide with the native N-terminal of the acidic tail sequence was included as a reference.
DOI: 10.5066/p952ldjt
title: Cottontail distribution in the Wyoming Basins Ecoregional Assessment area

description: Map of Cottontail distribution developed from a probability of occurrence map created using multi-scale vegetation, abiotic, and anthropogenic features.
DOI: 10.6084/m9.figshare.23810808
title: qMRI_maps_Session1.zip

description: quantitative maps in .mat format including T<sub>1</sub>, T<sub>2</sub>, and T<sub>2</sub><sup>*</sup> relaxation times, magnetic susceptibility, water and macromolecular tissue fractions, mean diffusivity and fractional anisotropy, magnetization transfer ratio (MTR), and inhomogeneous MTR.
DOI: 10.6084/m9.figshare.23811123
title: qMRI_maps_Session2.zip

description: quantitative maps in .mat format including T<sub>1</sub>, T<sub>2</sub>, and T<sub>2</sub><sup>*</sup> relaxation times, magnetic susceptibility, water and macromolecular tissue fractions, mean diffusivity and fractional anisotropy, magnetization transfer ratio (MTR), and inhomogeneous MTR.
DOI: 10.6084/m9.figshare.23811123.v1
title: qMRI_maps_Session2.zip

description: quantitative maps in .mat format including T<sub>1</sub>, T<sub>2</sub>, and T<sub>2</sub><sup>*</sup> relaxation times, magnetic susceptibility, water and macromolecular tissue fractions, mean diffusivity and fractional anisotropy, magnetization transfer ratio (MTR), and inhomogeneous MTR.
DOI: 10.6084/m9.figshare.23811492.v1
title: Example_RawData_SingleVolunteer.zip

description: This zip introduces MRI images in .dcm format, where sequences were optimized for brain imaging at 3 Tesla. Data includes images acquired using seven pulse-sequences, which can produce range of quantitative maps including T<sub>1</sub>, T<sub>2</sub>, and T<sub>2</sub><sup>*</sup> relaxation times, magnetic susceptibility, water and macromolecular tissue fractions, mean diffusivity and fractional anisotropy, magnetization transfer ratio (MTR), and inhomogeneous MTR.
DOI: 10.6084/m9.figshare.23810808.v1
title: qMRI_maps_Session1.zip

description: quantitative maps in .mat format including T<sub>1</sub>, T<sub>2</sub>, and T<sub>2</sub><sup>*</sup> relaxation times, magnetic susceptibility, water and macromolecular tissue fractions, mean diffusivity and fractional anisotropy, magnetization transfer ratio (MTR), and inhomogeneous MTR.
DOI: 10.6084/m9.figshare.23810808.v2
title: qMRI_maps_Session1.zip

description: quantitative maps in .mat format including T<sub>1</sub>, T<sub>2</sub>, and T<sub>2</sub><sup>*</sup> relaxation times, magnetic susceptibility, water and macromolecular tissue fractions, mean diffusivity and fractional anisotropy, magnetization transfer ratio (MTR), and inhomogeneous MTR.
DOI: 10.6084/m9.figshare.23811492
title: Example_RawData_SingleVolunteer.zip

description: This zip introduces MRI images in .dcm format, where sequences were optimized for brain imaging at 3 Tesla. Data includes images acquired using seven pulse-sequences, which can produce range of quantitative maps including T<sub>1</sub>, T<sub>2</sub>, and T<sub>2</sub><sup>*</sup> relaxation times, magnetic susceptibility, water and macromolecular tissue fractions, mean diffusivity and fractional anisotropy, magnetization transfer ratio (MTR), and inhomogeneous MTR.
DOI: 10.5281/zenodo.8200993
title: panulirus_laevicauda_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8200992
title: panulirus_laevicauda_zanfona_1.fasta.gz

description: .
DOI: 10.5519/qd.1puj3hwi
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5613340 records)
DOI: 10.5281/zenodo.8200997
title: panulirus_longipes_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8200996
title: panulirus_longipes_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8201009
title: panulirus_marginatus_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8201008
title: panulirus_marginatus_zanfona_1.fasta.gz

description: .
DOI: 10.57967/hf/0944
title: llama-2-13b-chatdemo
DOI: 10.6084/m9.figshare.23740071.v1
title: Principal Productive Mines of Canada

description: This database provides mine-level estimates for the Canadian mining industry with a persistent annual coverage between 1950 and 2022. These estimates are based on archival maps and a selection of historical sources, which follow a hierarchy of criteria-based credibility and standardization. The information contained in this database covers 947 mines and provides information about their location (longitude and latitude in decimal), the company ownership, the principal commodities produced, and the years of operation (opening and closing dates). It is the first open access database to propose an exhaustive, free, and reliable compilation of the principal mines in Canada. The geographic coordinates enable matching with other local, regional, and national databases, and allow for a wide range of research objectives to be met.
DOI: 10.25921/ewe9-t554
title: EK60 Water Column Sonar Data Collected During EX1904
DOI: 10.5519/qd.jleqi9cp
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1488 records)
DOI: 10.5519/qd.o4ufd9pz
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1488 records)
DOI: 10.6084/m9.figshare.20152525
title: Remote hearing aid renewal using pre-existing audiograms during the covid-19 pandemic

description: During the ongoing Covid-19 pandemic, many patients cancelled their scheduled hearing aid renewal. We offered to send them new hearing aids programmed according to the audiometric data on file. In this study we compared remote hearing aid renewal to a conventional renewal with a recent audiogram based on scores from the International Outcome Inventory for Hearing Aids (IOI-HA) questionnaire. We also examined the need for a physical visit for hearing aid adjustment in the remote group and analysed the accuracy of the pre-existing audiogram correction method using data from the control group. Retrospective chart review. 51 patients who underwent remote hearing aid renewal and 22 control patients who received office-based hearing aid renewal. IOI-HA scores were lower in the remote fitted group, but comparison with data from a Swedish nationwide database had no clinically significant differences. A follow-up physical appointment was required in only 20% of the remote group. The intraclass correlation coefficient (ICC) between the pure tone averages of the corrected former audiogram and measured audiogram was high. Remote hearing aid renewal using existing audiometric data is feasible, and most physical visits can be avoided.
DOI: 10.6084/m9.figshare.20037022
title: Web- and app-based tools for remote hearing assessment: a scoping review

description: Remote hearing screening and assessment may improve access to, and uptake of, hearing care. This review, the most comprehensive to date, aimed to (i) identify and assess functionality of remote hearing assessment tools on smartphones and online platforms, (ii) determine if assessed tools were also evaluated in peer-reviewed publications and (iii) report accuracy of existing validation data. Protocol was registered in INPLASY and reported according to PRISMA-Extension for Scoping Reviews. In total, 187 remote hearing assessment tools (using tones, speech, self-report or a combination) and 101 validation studies met the inclusion criteria. Quality, functionality, bias and applicability of each app were assessed by at least two authors. Assessed tools showed considerable variability in functionality. Twenty-two (12%) tools were peer-reviewed and 14 had acceptable functionality. The validation results and their quality varied greatly, largely depending on the category of the tool. The accuracy and reliability of most tools are unknown. Tone-producing tools provide approximate hearing thresholds but have calibration and background noise issues. Speech and self-report tools are less affected by these issues but mostly do not provide an estimated pure tone audiogram. Predicting audiograms using filtered language-independent materials could be a universal solution.
DOI: 10.6084/m9.figshare.20037022.v1
title: Web- and app-based tools for remote hearing assessment: a scoping review

description: Remote hearing screening and assessment may improve access to, and uptake of, hearing care. This review, the most comprehensive to date, aimed to (i) identify and assess functionality of remote hearing assessment tools on smartphones and online platforms, (ii) determine if assessed tools were also evaluated in peer-reviewed publications and (iii) report accuracy of existing validation data. Protocol was registered in INPLASY and reported according to PRISMA-Extension for Scoping Reviews. In total, 187 remote hearing assessment tools (using tones, speech, self-report or a combination) and 101 validation studies met the inclusion criteria. Quality, functionality, bias and applicability of each app were assessed by at least two authors. Assessed tools showed considerable variability in functionality. Twenty-two (12%) tools were peer-reviewed and 14 had acceptable functionality. The validation results and their quality varied greatly, largely depending on the category of the tool. The accuracy and reliability of most tools are unknown. Tone-producing tools provide approximate hearing thresholds but have calibration and background noise issues. Speech and self-report tools are less affected by these issues but mostly do not provide an estimated pure tone audiogram. Predicting audiograms using filtered language-independent materials could be a universal solution.
DOI: 10.6084/m9.figshare.20236470
title: Optimised adaptive procedures and analysis methods for conducting speech-in-noise tests

description: Speech-in-noise testing is a valuable part of audiological test batteries. Test standardisation using precise methods is desirable for ease of administration. This study investigated the accuracy and reliability of different Bayesian and non-Bayesian adaptive procedures and analysis methods for conducting speech-in-noise testing. Matrix sentence tests using different numbers of sentences (10, 20, 30 and 50) and target intelligibilities (50 and 75%) were simulated for modelled listeners with various characteristics. The accuracy and reliability of seven different measurement procedures and three different data analysis methods were assessed. The estimation of 50% intelligibility was accurate and showed excellent reliability across the majority of methods tested, even with relatively few stimuli. Estimating 75% intelligibility resulted in decreased accuracy. For this target, more stimuli were required for sufficient accuracy and selected Bayesian procedures surpassed the performance of others. Some Bayesian procedures were also superior in the estimation of psychometric function width. A single standardised procedure could improve the consistency of the matrix sentence test across a range of target intelligibilities. Candidate adaptive procedures and analysis methods are discussed. These could also be applicable for other speech materials. Further testing with human participants is required.
DOI: 10.6084/m9.figshare.20152525.v1
title: Remote hearing aid renewal using pre-existing audiograms during the covid-19 pandemic

description: During the ongoing Covid-19 pandemic, many patients cancelled their scheduled hearing aid renewal. We offered to send them new hearing aids programmed according to the audiometric data on file. In this study we compared remote hearing aid renewal to a conventional renewal with a recent audiogram based on scores from the International Outcome Inventory for Hearing Aids (IOI-HA) questionnaire. We also examined the need for a physical visit for hearing aid adjustment in the remote group and analysed the accuracy of the pre-existing audiogram correction method using data from the control group. Retrospective chart review. 51 patients who underwent remote hearing aid renewal and 22 control patients who received office-based hearing aid renewal. IOI-HA scores were lower in the remote fitted group, but comparison with data from a Swedish nationwide database had no clinically significant differences. A follow-up physical appointment was required in only 20% of the remote group. The intraclass correlation coefficient (ICC) between the pure tone averages of the corrected former audiogram and measured audiogram was high. Remote hearing aid renewal using existing audiometric data is feasible, and most physical visits can be avoided.
DOI: 10.6084/m9.figshare.20236470.v2
title: Optimised adaptive procedures and analysis methods for conducting speech-in-noise tests

description: Speech-in-noise testing is a valuable part of audiological test batteries. Test standardisation using precise methods is desirable for ease of administration. This study investigated the accuracy and reliability of different Bayesian and non-Bayesian adaptive procedures and analysis methods for conducting speech-in-noise testing. Matrix sentence tests using different numbers of sentences (10, 20, 30 and 50) and target intelligibilities (50 and 75%) were simulated for modelled listeners with various characteristics. The accuracy and reliability of seven different measurement procedures and three different data analysis methods were assessed. The estimation of 50% intelligibility was accurate and showed excellent reliability across the majority of methods tested, even with relatively few stimuli. Estimating 75% intelligibility resulted in decreased accuracy. For this target, more stimuli were required for sufficient accuracy and selected Bayesian procedures surpassed the performance of others. Some Bayesian procedures were also superior in the estimation of psychometric function width. A single standardised procedure could improve the consistency of the matrix sentence test across a range of target intelligibilities. Candidate adaptive procedures and analysis methods are discussed. These could also be applicable for other speech materials. Further testing with human participants is required.
DOI: 10.6084/m9.figshare.20020107
title: French adaptation and validation of the Speech, Spatial and Qualities of Hearing scale for Parents (SSQ-P) and for Children (SSQ-Ch)

description: Hearing loss can seriously impact children’s daily life. This study aims to translate and validate the French versions of the hearing performance questionnaires, SSQ-Parent (for 5–18 years old children), and SSQ-Children (for 11–18 years old children). This controlled prospective trial was conducted between April and October 2020. The forward-backward translation method was used, and a test-retest procedure was carried out on a case and a control population. Cases had at least 30 dBHL hearing loss. 54 cases (mean age 10.4 years old) and 32 controls (mean age 12.5 years old) answered the SSQ-Parent. 35 cases (mean age 13.1 years old) and 35 controls (mean age 14.3 years old) answered the SSQ-Children. Spearman’s correlation coefficients between global scores of the test and re-test were 0.91 (<i>p</i> &lt; 0.001) for SSQ-Parent, and 0.89 (<i>p</i> &lt; 0.001) for SSQ-Children. Both tests were discriminant (respectively, global score 57.8 vs 92 <i>p</i> &lt; 0.001, 61.2 vs 92.6 <i>p</i> &lt; 0.001), and internally consistent (Cronbach’s alpha 0.94 and 0.97). Items-global score correlation was satisfactory. ROC curves showed high area under curve for the SSQ-Children (0.990), and SSQ-Parent (0.988). The SSQ-Parent and SSQ-Children revealed excellent statistical properties, and can be used for the evaluation of hearing performance of children.
DOI: 10.6084/m9.figshare.22289401
title: The clinical use of electroencephalography in a general psychiatric setting

description: Electroencephalography (EEG) is used in psychiatric services, however, clinical guidelines do not clearly state when EEG is indicated, and its diagnostic value in psychiatric settings is unclear. We aimed to characterize the clinical use and diagnostic consequences of EEG in a general psychiatric setting to evaluate and optimize its use. We performed a quality development project at the psychiatric services of the Central Denmark Region. We identified patients referred for EEG examination from psychiatric services between 1 September 2017 and 1 September 2022. We extracted data from electronic health records on patient characteristics, indications, EEG results, and treatment consequences and analyzed risk factors for abnormal EEGs. Among 57,031 persons seen in the psychiatric services in the study period, 219 (0.4%) were referred for EEG examination. Psychosis (<i>n</i> = 70, 32%) was the most common symptom and suspicion of epilepsy (<i>n</i> = 129, 59%) was the most common clinical suspicion leading to referral. Of the 219 patients, 53 (24%) had an abnormal EEG result including 17 (7.8%) with epileptiform changes. Abnormal EEGs led to treatment alterations in six patients (3%). Age, prior epilepsy, use of antiseizure medication, use of clozapine, and convulsions were associated with epileptiform changes in the EEG. EEG is rarely used in psychiatric settings and seldom has treatment consequences. However, in specific clinical settings, the EEG result leads to an alteration of clinical management and the findings, therefore, call for refinement of clinical guidelines to optimize the use of EEG.