cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.7nh684
title: Occurrence Download

description: A dataset containing 137670 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (GBR.1.6.1_1, GBR.1.111_1, GBR.1.48_1, GBR.1.48.11_1)",
 "OccurrenceStatus is Present",
 "Year 2023-2023"
 ]
}

 The dataset includes 137670 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035143-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yyyfxs
title: Occurrence Download

description: A dataset containing 4458 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Royal Botanic Gardens, Kew - Fungarium Specimens",
 "TaxonKey is Myxomycetes"
 ]
}

 The dataset includes 4458 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035159-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29877470.v1
title: paper-major-revision

description: Artifacts for major revision
DOI: 10.6084/m9.figshare.29877470
title: paper-major-revision

description: Artifacts for major revision
DOI: 10.15468/dl.h45jt4
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ADJ9458"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035160-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12727692
title: Vietnam SARS-CoV-2 | COVID-19 Data
DOI: 10.15468/dl.476pyp
title: Occurrence Download

description: A dataset containing 1092578 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Cytisus scoparius, Stellaria media)"
 ]
}

 The dataset includes 1092578 records from 3959 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035154-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dpu8wh
title: Occurrence Download

description: A dataset containing 1926 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.2_1",
 "TaxonKey is Oreamnos americanus (Blainville, 1816)"
 ]
}

 The dataset includes 1926 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010318-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23645/epacomptox.28938446
title: Evaluating the Impact of Enzyme and Transporter Contributions to Oral Bioavailability: A Meta-Analysis

description: This meta-analysis provides a careful evaluation of toxicokinetic processes most likely to modulate oral bioavailability in humans, using human in vivo study data across 60 chemicals, and evaluating the contribution of hepatic clearance, CYP450 and UGT metabolism and transporter action. This analysis will enable the development of an approach to anticipate modulation of bioavailability in an efficient manner, and will be critical in informing next steps needed to modify existing higher throughput TK tools used in New Approach Method strategies for more efficient and predictive chemical evaluations.Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.23645/epacomptox.28938446.v1
title: Evaluating the Impact of Enzyme and Transporter Contributions to Oral Bioavailability: A Meta-Analysis

description: This meta-analysis provides a careful evaluation of toxicokinetic processes most likely to modulate oral bioavailability in humans, using human in vivo study data across 60 chemicals, and evaluating the contribution of hepatic clearance, CYP450 and UGT metabolism and transporter action. This analysis will enable the development of an approach to anticipate modulation of bioavailability in an efficient manner, and will be critical in informing next steps needed to modify existing higher throughput TK tools used in New Approach Method strategies for more efficient and predictive chemical evaluations.Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.5281/zenodo.11119522
title: Neutral processes and taxonomic scale drive beta species-genetic diversity correlations in a submesophotic tropical reef fish

description: This dataset is associated to the following publication:

Vilcot M, Faure N, Andrews KR, Bowen BW, Leprieur F, Manel S. (2024) Neutral processes and taxonomic scale drive beta species-genetic diversity correlations in a submesophotic tropical reef fish. Molecular Ecology 33, e17423. (doi:10.1111/mec.17423)

 

Data:  





"Report_DEtel22-6705_SNP_2_ordered_Bowen.csv": SNP data from Dart Sequencing on Etelis coruscans, from Andrews et al. (2020) samples


"PA_Mat_GaspObis.RDS": fish species presence data, gathered from an updated version of Albouy et al. (2019)



"metadata_samples_full.csv": all Etelis coruscans sample information, from Andrews et al. (2020) and the SEAMOUNTS project




"metadata_samples.csv": Etelis coruscans sample information, only for samples that have passed the genetic filtering and were used for subsequent analyses 




"metadata_stations.csv": sampling station information




"Taxonomy_Fishbase.csv": species taxonomic information, downloaded with rfishbase::load_taxa() 




"traits_Luiz_et_al_2013.csv": species trait information from Luiz et al. (2013)  



Related dataset:  

Etelis coruscans SNP data on samples from the SEAMOUNTS project are available at https://doi.org/10.5281/zenodo.11201065

Scripts:  

Scripts used to reproduce the analyses and figures of the final article are available at https://github.com/mvilcot/etelis_SGDCs 

 

References:  

Albouy, C., Archambault, P., Appeltans, W., Araújo, M. B., Beauchesne, D., Cazelles, K., Cirtwill, A. R., Fortin, M.-J., Galiana, N., Leroux, S. J., Pellissier, L., Poisot, T., Stouffer, D. B., Wood, S. A., & Gravel, D. (2019). The marine fish food web is globally connected. Nature Ecology & Evolution, 3(8), Article 8. https://doi.org/10.1038/s41559-019-0950-y   

Andrews, K. R., Copus, J. M., Wilcox, C., Williams, A. J., Newman, S. J., Wakefield, C. B., & Bowen, B. W. (2020). Range-Wide population structure of 3 deepwater Eteline snappers across the Indo-Pacific Basin. Journal of Heredity, 111(5), 471‑485. https://doi.org/10.1093/jhered/esaa029  

Luiz, O. J., Allen, A. P., Robertson, D. R., Floeter, S. R., Kulbicki, M., Vigliola, L., Becheler, R., & Madin, J. S. (2013). Adult and larval traits as determinants of geographic range size among tropical reef fishes. Proceedings of the National Academy of Sciences, 110(41), 16498‑16502. https://doi.org/10.1073/pnas.1304074110  

Boettiger, C., Lang, D. T., & Wainwright, P. C. (2012). rfishbase: Exploring, manipulating and visualizing FishBase data from R. Journal of Fish Biology, 81(6), 2030‑2039. https://doi.org/10.1111/j.1095-8649.2012.03464.x
DOI: 10.5281/zenodo.11119523
title: Neutral processes and taxonomic scale drive beta species-genetic diversity correlations in a submesophotic tropical reef fish

description: This dataset is associated to the following publication: Vilcot M., Faure N., Andrews, K. R., Bowen B. W., Leprieur F., & Manel S. (2024) Neutral processes and taxonomic scale drive beta species-genetic diversity correlations in a submesophotic tropical reef fish

Data:  





"Report_DEtel22-6705_SNP_2.csv": SNP data from Dart Sequencing on Etelis coruscans, from Andrews et al. (2020) and SEAMOUNTS samples


"PA_Mat_GaspObis.RDS": fish species presence data, gathered from an updated version of Albouy et al. (2019)



"metadata_samples_full.csv": all Etelis coruscans sample information, from Andrews et al. (2020) and the SEAMOUNTS project




"metadata_samples.csv": Etelis coruscans sample information, only for samples that have passed the genetic filtering and were used for subsequent analyses 




"metadata_stations.csv": sampling station information




"Taxonomy_Fishbase.csv": species taxonomic information, downloaded with rfishbase::load_taxa() 




"traits_Luiz_et_al_2013.csv": species trait information from Luiz et al. (2013)  



Scripts:  

Scripts used to reproduce the analyses and figures of the final article are available at https://github.com/mvilcot/etelis_SGDCs 

 

References:  

Albouy, C., Archambault, P., Appeltans, W., Araújo, M. B., Beauchesne, D., Cazelles, K., Cirtwill, A. R., Fortin, M.-J., Galiana, N., Leroux, S. J., Pellissier, L., Poisot, T., Stouffer, D. B., Wood, S. A., & Gravel, D. (2019). The marine fish food web is globally connected. Nature Ecology & Evolution, 3(8), Article 8. https://doi.org/10.1038/s41559-019-0950-y   

Andrews, K. R., Copus, J. M., Wilcox, C., Williams, A. J., Newman, S. J., Wakefield, C. B., & Bowen, B. W. (2020). Range-Wide population structure of 3 deepwater Eteline snappers across the Indo-Pacific Basin. Journal of Heredity, 111(5), 471‑485. https://doi.org/10.1093/jhered/esaa029  

Luiz, O. J., Allen, A. P., Robertson, D. R., Floeter, S. R., Kulbicki, M., Vigliola, L., Becheler, R., & Madin, J. S. (2013). Adult and larval traits as determinants of geographic range size among tropical reef fishes. Proceedings of the National Academy of Sciences, 110(41), 16498‑16502. https://doi.org/10.1073/pnas.1304074110  

Boettiger, C., Lang, D. T., & Wainwright, P. C. (2012). rfishbase: Exploring, manipulating and visualizing FishBase data from R. Journal of Fish Biology, 81(6), 2030‑2039. https://doi.org/10.1111/j.1095-8649.2012.03464.x
DOI: 10.5281/zenodo.11202673
title: Neutral processes and taxonomic scale drive beta species-genetic diversity correlations in a submesophotic tropical reef fish

description: This dataset is associated to the following publication:

Vilcot M, Faure N, Andrews KR, Bowen BW, Leprieur F, Manel S. (2024) Neutral processes and taxonomic scale drive beta species-genetic diversity correlations in a submesophotic tropical reef fish. Molecular Ecology 33, e17423. (doi:10.1111/mec.17423)

 

Data:  





"Report_DEtel22-6705_SNP_2_ordered_Bowen.csv": SNP data from Dart Sequencing on Etelis coruscans, from Andrews et al. (2020) samples


"PA_Mat_GaspObis.RDS": fish species presence data, gathered from an updated version of Albouy et al. (2019)



"metadata_samples_full.csv": all Etelis coruscans sample information, from Andrews et al. (2020) and the SEAMOUNTS project




"metadata_samples.csv": Etelis coruscans sample information, only for samples that have passed the genetic filtering and were used for subsequent analyses 




"metadata_stations.csv": sampling station information




"Taxonomy_Fishbase.csv": species taxonomic information, downloaded with rfishbase::load_taxa() 




"traits_Luiz_et_al_2013.csv": species trait information from Luiz et al. (2013)  



Related dataset:  

Etelis coruscans SNP data on samples from the SEAMOUNTS project are available at https://doi.org/10.5281/zenodo.11201065

Scripts:  

Scripts used to reproduce the analyses and figures of the final article are available at https://github.com/mvilcot/etelis_SGDCs 

 

References:  

Albouy, C., Archambault, P., Appeltans, W., Araújo, M. B., Beauchesne, D., Cazelles, K., Cirtwill, A. R., Fortin, M.-J., Galiana, N., Leroux, S. J., Pellissier, L., Poisot, T., Stouffer, D. B., Wood, S. A., & Gravel, D. (2019). The marine fish food web is globally connected. Nature Ecology & Evolution, 3(8), Article 8. https://doi.org/10.1038/s41559-019-0950-y   

Andrews, K. R., Copus, J. M., Wilcox, C., Williams, A. J., Newman, S. J., Wakefield, C. B., & Bowen, B. W. (2020). Range-Wide population structure of 3 deepwater Eteline snappers across the Indo-Pacific Basin. Journal of Heredity, 111(5), 471‑485. https://doi.org/10.1093/jhered/esaa029  

Luiz, O. J., Allen, A. P., Robertson, D. R., Floeter, S. R., Kulbicki, M., Vigliola, L., Becheler, R., & Madin, J. S. (2013). Adult and larval traits as determinants of geographic range size among tropical reef fishes. Proceedings of the National Academy of Sciences, 110(41), 16498‑16502. https://doi.org/10.1073/pnas.1304074110  

Boettiger, C., Lang, D. T., & Wainwright, P. C. (2012). rfishbase: Exploring, manipulating and visualizing FishBase data from R. Journal of Fish Biology, 81(6), 2030‑2039. https://doi.org/10.1111/j.1095-8649.2012.03464.x
DOI: 10.57780/cr2-e72bb9d
title: HIGHWAY_Cryo_TEMPO_POCA_SIR_TDP_IW

description: CryoSat-2 Cryo-TEMPO Inland Waters in cloud-native data format
DOI: 10.15468/dl.r59q7w
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "Geometry POLYGON((836.72261 5.02896,844.68654 5.02896,844.68654 12.88925,836.72261 12.88925,836.72261 5.02896))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eucheuma denticulatum (N.L.Burman) F.S.Collins & Hervey, 1917",
 "Year 1950-2025"
 ]
}

 The dataset includes 16 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018128-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n44pkz
title: Occurrence Download

description: A dataset containing 852 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Protura",
 "Year is greater than or equal to 1990",
 "Continent is Europe"
 ]
}

 The dataset includes 852 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018126-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15341770
title: canine-gut-microbiome-diets

description: This dataset accompanies the study "Quantifying differences in the canine gut microbiome between fresh and processed diets". It includes OTU tables, taxonomy annotations, participant metadata, and biometric information collected from 103 dogs enrolled in a home-based, cross-sectional study. The data were generated via 16S rRNA gene sequencing and processed using R scripts provided in the associated GitHub repository. These files enable reproducible analysis of microbiome composition, diversity, and predicted functional pathways stratified by diet type.
DOI: 10.5281/zenodo.15341771
title: canine-gut-microbiome-diets

description: This dataset accompanies the study "Quantifying differences in the canine gut microbiome between fresh and processed diets". It includes OTU tables, taxonomy annotations, participant metadata, and biometric information collected from 103 dogs enrolled in a home-based, cross-sectional study. The data were generated via 16S rRNA gene sequencing and processed using R scripts provided in the associated GitHub repository. These files enable reproducible analysis of microbiome composition, diversity, and predicted functional pathways stratified by diet type.
DOI: 10.15468/dl.e6strx
title: Occurrence Download

description: A dataset containing 292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Microcavia australis (I.Geoffroy Saint-Hilaire & d'Orbigny, 1833)"
 ]
}

 The dataset includes 292 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018127-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7e685j
title: Occurrence Download

description: A dataset containing 4518 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myrsine semiserrata Wall."
 ]
}

 The dataset includes 4518 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018129-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aytdsr
title: Occurrence Download

description: A dataset containing 470991 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Melozone aberti (S.F.Baird, 1852)",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 470991 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018091-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4cmqfn
title: Occurrence Download

description: A dataset containing 555 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-29.173447537473237 36.58605460385439,-25.173447537473237 36.58605460385439,-25.173447537473237 40.58605460385439,-29.173447537473237 40.58605460385439,-29.173447537473237 36.58605460385439))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Planococcus citri (Risso, 1813)"
 ]
}

 The dataset includes 555 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018131-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e5ejz7
title: Occurrence Download

description: A dataset containing 3725 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Quercus cerris populations from Central-Eastern Europe and Middle East (IBBR-QUERCUS-CERRIS), iNaturalist Research-grade Observations)",
 "TaxonKey is Quercus cerris L."
 ]
}

 The dataset includes 3725 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018132-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15350763
title: anablepsoides_waimacui_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.15350764
title: anablepsoides_waimacui_zanfona_1.fasta.gz
DOI: 10.15468/dl.cd6mrx
title: Occurrence Download

description: A dataset listing the 463 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.25793 -9.88914,-75.62228 -9.88782,-75.96168 -10.16695,-75.54102 -10.71146,-74.6073 -10.89499,-74.90361 -9.84597,-75.25793 -9.88914))",
 "TaxonKey is Melastomataceae"
 ]
}

 The dataset's 463 records were derived from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018117-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.np6xnr
title: Occurrence Download

description: A dataset containing 60812 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "CoordinateUncertaintyInMeters 0.0-1000000.0",
 "GbifRegion is Latin America and the Caribbean",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Accipitridae"
 ]
}

 The dataset includes 60812 records from 157 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018108-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17877/resolv-2025-m9i8ry5l
title: Electronic supplement to Imidazo[1,5-a]pyridines – A Versatile Platform for Structurally Distinct N-Heterocyclic Olefins and π-Extended Heterocycles

description: The dataset contains NMR spectra (NMR), IR spectra, UV-Vis data, Cyclic Voltammograms (CV), EPR data and ORCA output files (DFT). The data is structured according to synthesized compounds, which can be identified by the related publication (Schemes 2, 3 and Figure 3). The files can be opened with standard programs (e.g. NMR -&gt; TopSpin, MestReNova; OpenMS, IR -&gt; Spectragryph, BRUKER OPUS).
description: The synthesis of polarized N-heterocyclic olefins (NHOs) based on an imidazo[1,5-a]pyridine scaffold is presented. In contrast to regular NHOs the unique bicyclic heterocyclic core allows the incorporation of various substituents in close proximity to the highly polarized exocyclic C–C bond. The donor properties of the new carbon-based ligand class were quantified and the coordination chemistry explored. Alkenyl or alkynyl groups at the C5-position lead to spontaneous cyclization to yield imidazo[2,1,5-de]quinolizines. The unique cyclization strategy was compatible with a wide range of substitution patterns and yields highly electron-rich π-delocalized heterocycles. The electronic structure of the novel partially antiaromatic heterocycle was thoroughly investigated. One-electron oxidation occurs at low potentials and lead to a stable monomeric radical-cation confirmed by XRD, which showed solution phase fluorescence expanding into the field of open-shell organic materials.
DOI: 10.15468/dl.fj8zn9
title: Occurrence Download

description: A dataset containing 916 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Symphyla",
 "Year is greater than or equal to 1990",
 "Continent is Europe"
 ]
}

 The dataset includes 916 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018133-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nckuw7
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((123.09012 11.97207,123.10621 11.53089,123.1384 11.16006,123.58904 10.77296,124.07991 10.82039,124.3857 11.00212,124.32132 11.53089,123.47638 12.216,123.09012 11.97207))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Upeneus tragula Richardson, 1846",
 "Year 1000-2025"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018135-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.