cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/cec48411fef6c0da1c7991e4061f4906
title: Mega-Monsoon Experiment (MegaME) Vegetation Sampling Data from the Sevilleta National Wildlife Refuge, New Mexico

description: Shrub encroachment is a global phenomenon. Both the causes and consequences of shrub encroachment vary regionally and globally. In the southwestern US a common native C3 shrub species, creosotebush, has invaded millions of hectares of arid and semi-arid C4-dominated grassland. At the Sevilleta LTER site, it appears that the grassland-shrubland ecotone is relatively stable, but infill by creosotebush continues to occur. The consequences of shrub encroachment have been and continue to be carefully documented, but the ecological drivers of shrub encroachment in the southwestern US are not well known. One key factor that may promote shrub encroachment is grazing by domestic livestock. However, multiple environmental drivers have changed over the 150 years during which shrub expansion has occurred through the southwestern US. Temperatures are warmer, atmospheric CO2 has increased, drought and rainy cycles have occurred, and grazing pressure has decreased. From our prior research we know that prolonged drought greatly reduces the abundance of native grasses while having limited impact on the abundance of creosotebush in the grass-shrub ecotone. So once established, creosotebush populations are persistent and resistant to climate cycles. We also know that creosotebush seedlings tend to appear primarily when rainfall during the summer monsoon is well above average. However, high rainfall years also stimulate the growth of the dominant grasses creating a competitive environment that may not favor seedling establishment and survival. The purpose of the Mega-Monsoon Experiment (MegaME) is twofold. First, this experiment will determine if high rainfall years coupled with (simulated) grazing promote the establishment and growth of creosotebush seedlings in the grassland-shrubland ecotone at Sevilleta, thus promoting infill and expansion of creosotebush into native grassland. Second, MegaME will determine if a sequence of wet summer monsoons will promote the establishment and growth of native C4 grasses in areas where creosotebush is now dominant, thus demonstrating that high rainfall and dispersal limitation prevent grassland expansion into creosotebush shrubland.
DOI: 10.5441/001/1.3q2131q5/1
title: Collective movement in wild baboons-gps-1of4.csv

description: Harel R, Loftus JC, Crofoot MC. 2021. Locomotor compromises maintain group cohesion in baboon troops on the move. P Roy Soc B. 288(1955):20210839. doi:10.1098/rspb.2021.0839
description: When members of a group differ in locomotor capacity, coordinating collective movement poses a challenge: some individuals may have to move faster (or slower) than their preferred speed to remain together. Such compromises have energetic repercussions, yet research in collective behaviour has largely neglected locomotor consensus costs. Here, we integrate high-resolution tracking of wild baboon locomotion and movement with simulations to demonstrate that size-based variation in locomotor capacity poses an obstacle to the collective movement. While all baboons modulate their gait and move-pause dynamics during collective movement, the costs of maintaining cohesion are disproportionately borne by smaller group members. Although consensus costs are not distributed equally, all group-mates do make locomotor compromises, suggesting a shared decision-making process drives the pace of collective movement in this highly despotic species. These results highlight the importance of considering how social dynamics and locomotor capacity interact to shape the movement ecology of group-living species.
DOI: 10.5441/001/1.3q2131q5/2
title: Collective movement in wild baboons-gps-2of4.csv

description: Harel R, Loftus JC, Crofoot MC. 2021. Locomotor compromises maintain group cohesion in baboon troops on the move. P Roy Soc B. 288(1955):20210839. doi:10.1098/rspb.2021.0839
description: When members of a group differ in locomotor capacity, coordinating collective movement poses a challenge: some individuals may have to move faster (or slower) than their preferred speed to remain together. Such compromises have energetic repercussions, yet research in collective behaviour has largely neglected locomotor consensus costs. Here, we integrate high-resolution tracking of wild baboon locomotion and movement with simulations to demonstrate that size-based variation in locomotor capacity poses an obstacle to the collective movement. While all baboons modulate their gait and move-pause dynamics during collective movement, the costs of maintaining cohesion are disproportionately borne by smaller group members. Although consensus costs are not distributed equally, all group-mates do make locomotor compromises, suggesting a shared decision-making process drives the pace of collective movement in this highly despotic species. These results highlight the importance of considering how social dynamics and locomotor capacity interact to shape the movement ecology of group-living species.
DOI: 10.26300/dj9c-2c09
title: Data documentation for "Successful Community Discharge among Older Adults with TBI Admitted to Inpatient Rehabilitation Facilities"
DOI: 10.5441/001/1.3q2131q5/3
title: Collective movement in wild baboons-gps-3of4.csv

description: Harel R, Loftus JC, Crofoot MC. 2021. Locomotor compromises maintain group cohesion in baboon troops on the move. P Roy Soc B. 288(1955):20210839. doi:10.1098/rspb.2021.0839
description: When members of a group differ in locomotor capacity, coordinating collective movement poses a challenge: some individuals may have to move faster (or slower) than their preferred speed to remain together. Such compromises have energetic repercussions, yet research in collective behaviour has largely neglected locomotor consensus costs. Here, we integrate high-resolution tracking of wild baboon locomotion and movement with simulations to demonstrate that size-based variation in locomotor capacity poses an obstacle to the collective movement. While all baboons modulate their gait and move-pause dynamics during collective movement, the costs of maintaining cohesion are disproportionately borne by smaller group members. Although consensus costs are not distributed equally, all group-mates do make locomotor compromises, suggesting a shared decision-making process drives the pace of collective movement in this highly despotic species. These results highlight the importance of considering how social dynamics and locomotor capacity interact to shape the movement ecology of group-living species.
DOI: 10.5441/001/1.3q2131q5/4
title: Collective movement in wild baboons-gps-4of4.csv

description: Harel R, Loftus JC, Crofoot MC. 2021. Locomotor compromises maintain group cohesion in baboon troops on the move. P Roy Soc B. 288(1955):20210839. doi:10.1098/rspb.2021.0839
description: When members of a group differ in locomotor capacity, coordinating collective movement poses a challenge: some individuals may have to move faster (or slower) than their preferred speed to remain together. Such compromises have energetic repercussions, yet research in collective behaviour has largely neglected locomotor consensus costs. Here, we integrate high-resolution tracking of wild baboon locomotion and movement with simulations to demonstrate that size-based variation in locomotor capacity poses an obstacle to the collective movement. While all baboons modulate their gait and move-pause dynamics during collective movement, the costs of maintaining cohesion are disproportionately borne by smaller group members. Although consensus costs are not distributed equally, all group-mates do make locomotor compromises, suggesting a shared decision-making process drives the pace of collective movement in this highly despotic species. These results highlight the importance of considering how social dynamics and locomotor capacity interact to shape the movement ecology of group-living species.
DOI: 10.5441/001/1.3q2131q5/5
title: Collective movement in wild baboons-acc-1of4.csv

description: Harel R, Loftus JC, Crofoot MC. 2021. Locomotor compromises maintain group cohesion in baboon troops on the move. P Roy Soc B. 288(1955):20210839. doi:10.1098/rspb.2021.0839
description: When members of a group differ in locomotor capacity, coordinating collective movement poses a challenge: some individuals may have to move faster (or slower) than their preferred speed to remain together. Such compromises have energetic repercussions, yet research in collective behaviour has largely neglected locomotor consensus costs. Here, we integrate high-resolution tracking of wild baboon locomotion and movement with simulations to demonstrate that size-based variation in locomotor capacity poses an obstacle to the collective movement. While all baboons modulate their gait and move-pause dynamics during collective movement, the costs of maintaining cohesion are disproportionately borne by smaller group members. Although consensus costs are not distributed equally, all group-mates do make locomotor compromises, suggesting a shared decision-making process drives the pace of collective movement in this highly despotic species. These results highlight the importance of considering how social dynamics and locomotor capacity interact to shape the movement ecology of group-living species.
DOI: 10.5441/001/1.3q2131q5/6
title: Collective movement in wild baboons-acc-2of4.csv

description: Harel R, Loftus JC, Crofoot MC. 2021. Locomotor compromises maintain group cohesion in baboon troops on the move. P Roy Soc B. 288(1955):20210839. doi:10.1098/rspb.2021.0839
description: When members of a group differ in locomotor capacity, coordinating collective movement poses a challenge: some individuals may have to move faster (or slower) than their preferred speed to remain together. Such compromises have energetic repercussions, yet research in collective behaviour has largely neglected locomotor consensus costs. Here, we integrate high-resolution tracking of wild baboon locomotion and movement with simulations to demonstrate that size-based variation in locomotor capacity poses an obstacle to the collective movement. While all baboons modulate their gait and move-pause dynamics during collective movement, the costs of maintaining cohesion are disproportionately borne by smaller group members. Although consensus costs are not distributed equally, all group-mates do make locomotor compromises, suggesting a shared decision-making process drives the pace of collective movement in this highly despotic species. These results highlight the importance of considering how social dynamics and locomotor capacity interact to shape the movement ecology of group-living species.
DOI: 10.5441/001/1.3q2131q5/7
title: Collective movement in wild baboons-acc-3of4.csv

description: Harel R, Loftus JC, Crofoot MC. 2021. Locomotor compromises maintain group cohesion in baboon troops on the move. P Roy Soc B. 288(1955):20210839. doi:10.1098/rspb.2021.0839
description: When members of a group differ in locomotor capacity, coordinating collective movement poses a challenge: some individuals may have to move faster (or slower) than their preferred speed to remain together. Such compromises have energetic repercussions, yet research in collective behaviour has largely neglected locomotor consensus costs. Here, we integrate high-resolution tracking of wild baboon locomotion and movement with simulations to demonstrate that size-based variation in locomotor capacity poses an obstacle to the collective movement. While all baboons modulate their gait and move-pause dynamics during collective movement, the costs of maintaining cohesion are disproportionately borne by smaller group members. Although consensus costs are not distributed equally, all group-mates do make locomotor compromises, suggesting a shared decision-making process drives the pace of collective movement in this highly despotic species. These results highlight the importance of considering how social dynamics and locomotor capacity interact to shape the movement ecology of group-living species.
DOI: 10.5441/001/1.3q2131q5/8
title: Collective movement in wild baboons-acc-4of4.csv

description: Harel R, Loftus JC, Crofoot MC. 2021. Locomotor compromises maintain group cohesion in baboon troops on the move. P Roy Soc B. 288(1955):20210839. doi:10.1098/rspb.2021.0839
description: When members of a group differ in locomotor capacity, coordinating collective movement poses a challenge: some individuals may have to move faster (or slower) than their preferred speed to remain together. Such compromises have energetic repercussions, yet research in collective behaviour has largely neglected locomotor consensus costs. Here, we integrate high-resolution tracking of wild baboon locomotion and movement with simulations to demonstrate that size-based variation in locomotor capacity poses an obstacle to the collective movement. While all baboons modulate their gait and move-pause dynamics during collective movement, the costs of maintaining cohesion are disproportionately borne by smaller group members. Although consensus costs are not distributed equally, all group-mates do make locomotor compromises, suggesting a shared decision-making process drives the pace of collective movement in this highly despotic species. These results highlight the importance of considering how social dynamics and locomotor capacity interact to shape the movement ecology of group-living species.
DOI: 10.5441/001/1.3q2131q5/9
title: Collective movement in wild baboons-reference-data

description: Harel R, Loftus JC, Crofoot MC. 2021. Locomotor compromises maintain group cohesion in baboon troops on the move. P Roy Soc B. 288(1955):20210839. doi:10.1098/rspb.2021.0839
description: When members of a group differ in locomotor capacity, coordinating collective movement poses a challenge: some individuals may have to move faster (or slower) than their preferred speed to remain together. Such compromises have energetic repercussions, yet research in collective behaviour has largely neglected locomotor consensus costs. Here, we integrate high-resolution tracking of wild baboon locomotion and movement with simulations to demonstrate that size-based variation in locomotor capacity poses an obstacle to the collective movement. While all baboons modulate their gait and move-pause dynamics during collective movement, the costs of maintaining cohesion are disproportionately borne by smaller group members. Although consensus costs are not distributed equally, all group-mates do make locomotor compromises, suggesting a shared decision-making process drives the pace of collective movement in this highly despotic species. These results highlight the importance of considering how social dynamics and locomotor capacity interact to shape the movement ecology of group-living species.
DOI: 10.5441/001/1.kn0816jn/1
title: Collective movement in wild baboons (data from Strandburg-Peshkin et al. 2015).csv

description: Strandburg-Peshkin A, Farine DR, Couzin ID, Crofoot MC (2015) Shared decision-making drives collective movement in wild baboons. Science. doi:10.1126/science.aaa5099
description: Conflicts of interest about where to go and what to do are a primary challenge of group living. However, it remains unclear how consensus is achieved in stable groups with stratified social relationships. Tracking wild baboons with a high-resolution global positioning system and analyzing their movements relative to one another reveals that a process of shared decision-making governs baboon movement. Rather than preferentially following dominant individuals, baboons are more likely to follow when multiple initiators agree. When conflicts arise over the direction of movement, baboons choose one direction over the other when the angle between them is large, but they compromise if it is not. These results are consistent with models of collective motion, suggesting that democratic collective action emerging from simple rules is widespread, even in complex, socially stratified societies.
DOI: 10.5441/001/1.kn0816jn/3
title: Collective movement in wild baboons (data from Strandburg-Peshkin et al. 2015)-reference-data

description: Strandburg-Peshkin A, Farine DR, Couzin ID, Crofoot MC (2015) Shared decision-making drives collective movement in wild baboons. Science. doi:10.1126/science.aaa5099
description: Overcoming conflicts of interest about where to go and what to do is a primary challenge of group-living. The behavioural strategies organisms use to reach consensus decisions are central to understanding the evolution of social complexity. Democratic processes underlie collective dynamics across a wide range of species, but it remains unknown if similar mechanisms apply when groups are strongly stratified. By simultaneously tracking the movements of members of a wild baboon troop using high-resolution GPS telemetry, we show that shared decision-making governs collective movement decisions, even in these socially complex, highly hierarchical societies. Baboons are more likely to follow when there is strong directional agreement among multiple movement initiators. When initiators propose movement directions that are different, followers compromise by moving in the average of the proposed directions, but only if this difference is small. If the difference between proposed directions exceeds a critical angle, followers move in one direction or the other, and choose based on a majority rule. Our results highlight the importance of explicitly considering the geometry of decision-making in mobile animal groups, and suggest that collective action based on relatively simple rules may be widespread even in complex animal societies.
DOI: 10.5281/zenodo.5176377
title: Typhlichthys eigenmanni EN1 SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5176376
title: Typhlichthys eigenmanni EN1 SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5176379
title: Typhlichthys eigenmanni MLN_0404 SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5176378
title: Typhlichthys eigenmanni MLN_0404 SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5176381
title: Typhlichthys eigenmanni MLN_0414 SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5176380
title: Typhlichthys eigenmanni MLN_0414 SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5176426
title: Typhlichthys subterraneus MLN_0051 SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5176425
title: Typhlichthys subterraneus MLN_0051 SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5176418
title: Typhlichthys eigenmanni MLN_0429 SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5176417
title: Typhlichthys eigenmanni MLN_0429 SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5176424
title: Typhlichthys subterraneus MLN_18 SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5176423
title: Typhlichthys subterraneus MLN_18 SPAdes preassembly

description: .
DOI: 10.5517/ccdc.csd.cc27vvvt
title: CCDC 2081397: Experimental Crystal Structure Determination

description: Related Article: Nicholas M. Orchanian, Lorena E. Hong, David A. Velazquez, Smaranda C. Marinescu|2021|Dalton Trans.|50|10779|doi:10.1039/D0DT03270K
DOI: 10.5517/ccdc.csd.cc27wd5q
title: CCDC 2081903: Experimental Crystal Structure Determination

description: Related Article: Guanming Liao, Jia Zhang, Xiaoyan Zheng, Xiaodi Jia, Jialiang Xu, Fenggui Zhao, Nan Wang, Kanglei Liu, Pangkuan Chen, Xiaodong Yin|2021|Chem.Commun.|57|7926|doi:10.1039/D1CC03311E
DOI: 10.5517/ccdc.csd.cc25hgw1
title: CCDC 2010873: Experimental Crystal Structure Determination

description: Related Article: Guanming Liao, Jia Zhang, Xiaoyan Zheng, Xiaodi Jia, Jialiang Xu, Fenggui Zhao, Nan Wang, Kanglei Liu, Pangkuan Chen, Xiaodong Yin|2021|Chem.Commun.|57|7926|doi:10.1039/D1CC03311E
DOI: 10.5517/ccdc.csd.cc25lbvz
title: CCDC 2013631: Experimental Crystal Structure Determination

description: Related Article: Guanming Liao, Jia Zhang, Xiaoyan Zheng, Xiaodi Jia, Jialiang Xu, Fenggui Zhao, Nan Wang, Kanglei Liu, Pangkuan Chen, Xiaodong Yin|2021|Chem.Commun.|57|7926|doi:10.1039/D1CC03311E
DOI: 10.5517/ccdc.csd.cc27wmmd
title: CCDC 2082134: Experimental Crystal Structure Determination

description: Related Article: Guanming Liao, Jia Zhang, Xiaoyan Zheng, Xiaodi Jia, Jialiang Xu, Fenggui Zhao, Nan Wang, Kanglei Liu, Pangkuan Chen, Xiaodong Yin|2021|Chem.Commun.|57|7926|doi:10.1039/D1CC03311E
DOI: 10.5517/ccdc.csd.cc27xtss
title: CCDC 2083286: Experimental Crystal Structure Determination

description: Related Article: Yao Zhu, Yue Qi, Xinghua Guo, Meicheng Zhang, Zhimin Jia, Chuanqin Xia, Ning Liu, Chiyao Bai, Lijian Ma, Qin Wang|2021|J.Mater.Chem.A|9|16961|doi:10.1039/D1TA03879F
DOI: 10.5281/zenodo.5176503
title: Typhlichthys subterraneus MLN_0272 SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5176502
title: Typhlichthys subterraneus MLN_0272 SPAdes preassembly

description: .
DOI: 10.6084/m9.figshare.15138822
title: Virtual Phantoms

description: This folder contains 5 patient-derived virtual phantoms. Virtual phantoms were developed from patient scan data to provide flexible, programmable, and quantiative ground truths for reconstruction testing while maintaining realistic models of patient phyisology and bolus propogation.<br>Parameters of pharmacokinetic models were fit from patient data and used with patient images to define virtual phantoms. These phantoms were implemented as a stored set of parameters and evaluation functions and are designed as inputs to a virtual scan simulator also developed for this project. Code for the virtual scanner can be found, along with a demo, at https://github.com/tyo8/ECA_Demo .<br>The phantoms used in this experiment modeled noisy acquisition with signal from three different classes of sources; vessel, lesion, and background. Vessel and lesion signal components come from distinct models but a single procedure; all signal components are additive.<br>Vessels and lesions were segmented from patient images and perfusion maps were created from ultrafast data, using a flow constraint method developed by Chengyue Wu at the University of Texas (reference).<br>In addition to the virtual phantoms, each MATLAB file in this folder contains a minimal complete set of inputs to run the phantom through the virtual scanner, including virtual MRI acquisition parameters (e.g., TR and TE) and an acquisition sequence.
DOI: 10.6084/m9.figshare.15138822.v1
title: Virtual Phantoms

description: This folder contains 5 patient-derived virtual phantoms. Virtual phantoms were developed from patient scan data to provide flexible, programmable, and quantiative ground truths for reconstruction testing while maintaining realistic models of patient phyisology and bolus propogation.<br>Parameters of pharmacokinetic models were fit from patient data and used with patient images to define virtual phantoms. These phantoms were implemented as a stored set of parameters and evaluation functions and are designed as inputs to a virtual scan simulator also developed for this project. Code for the virtual scanner can be found, along with a demo, at https://github.com/tyo8/ECA_Demo .<br>The phantoms used in this experiment modeled noisy acquisition with signal from three different classes of sources; vessel, lesion, and background. Vessel and lesion signal components come from distinct models but a single procedure; all signal components are additive.<br>Vessels and lesions were segmented from patient images and perfusion maps were created from ultrafast data, using a flow constraint method developed by Chengyue Wu at the University of Texas (reference).<br>In addition to the virtual phantoms, each MATLAB file in this folder contains a minimal complete set of inputs to run the phantom through the virtual scanner, including virtual MRI acquisition parameters (e.g., TR and TE) and an acquisition sequence.