cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25810/fj1y-8c74.49
title: International Wire Services Coverage of Climate Change or Global Warming, 2004-2023 - January 2023

description: The Media and Climate Change Observatory Data monitors 126 sources (across newspapers, radio and TV) in 58 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.22184155
title: Contralaterally projecting RGC axons

description: Reconstructions of constralaterally projecting RGC axons co-electroporated with anti-sense morpholinos and EGFP from 3D images acquired using <em>in vivo</em> multi-photon mictroscopy over 4 days. Mastersheet matching the file name with the metadata, including electroporated morpholino, day of imaging and micron to pixel conversion is provided.
DOI: 10.6084/m9.figshare.22184155.v1
title: Contralaterally projecting RGC axons

description: Reconstructions of constralaterally projecting RGC axons co-electroporated with anti-sense morpholinos and EGFP from 3D images acquired using <em>in vivo</em> multi-photon mictroscopy over 4 days. Mastersheet matching the file name with the metadata, including electroporated morpholino, day of imaging and micron to pixel conversion is provided.
DOI: 10.6084/m9.figshare.3761562.v2512
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5066/p9wrnptn
title: World Ecological Land Units (ELUs) 2015

description: In response to the need and an intergovernmental commission for a high resolution and data-derived global ecosystem map, land surface elements of global ecological pattern were characterized in an ecophysiographic stratification of the planet. The stratification produced 3,923 terrestrial ecological land units (ELUs) at a base resolution of 250 meters. The ELUs were derived from data on land surface features in a three step approach. The first step involved acquiring or developing four global raster datalayers representing the primary components of ecosystem structure: bioclimate, landform, lithology, and land cover. These datasets generally represent the most accurate, current, globally comprehensive, and finest spatial and thematic resolution data available for each of the four inputs. The second step involved a spatial combination of the four inputs into a single, new integrated raster dataset where every cell represents a combination of values from the bioclimate, landforms, lithology, and land cover datalayers. This foundational global raster datalayer, called ecological facets (EFs), contains 47,650 unique combinations of the four inputs. The third step involved an aggregation of the EFs into the 3,923 ELUs.
DOI: 10.5066/p9o035qj
title: Global Mountains K3

description: A new, high-resolution (250 m) map of global mountains derived from terrain characteristics. This new 250-m resource documents a larger global mountain extent than previous characterizations, although it excludes plateaus, hilly forelands, and other landforms that are often considered part of mountain areas. This resource was developed by the U.S. Geological Survey (USGS), in partnership with Esri, the Center for Development and Environment of the University of Bern (CDE), the Global Mountain Biodiversity Assessment (GMBA), and the Mountain Research Initiative (MRI).
DOI: 10.6084/m9.figshare.21743759
title: Data and Code Associated with Sauve et al. Evol Letters

description: Included is the dataset used to measure selection gradients for mass and wing length across the ontogeny of nestling black-legged kittiwakes on Middleton Island, Alaska. <br> Each .csv file includes the following variables for age specific observations of nestling black-legged kittiwakes. The number after ALL indicates the age observations were taken and a number 1 following the age is the dataset that includes environmental predictors. For example hatching masses are all included in the ALL0.csv and age 5 masses are all included in the ALL5.csv. ALL01 is the file that includes environmental predictors for survival from age 0 days (hatching) to age 5 days. ALL051 would be the file that includes environmental predictors of survival from age 5 days to age 10 days. <br> <br> - Year: indicates the year of measurement - Treatment: indicates the food supplementation treatment of the nestling observations were recorded for. fed equals food supplemented and unfed equals non-food supplemented. - Rank: indicates that hatching rank of the nestling. a equals first hatched and b indicates second-hatched - Age: indicates the age of mass and wing-length measurement - Weight: The mass measurement in grams - Wing: The wing length measurement of a nestling in millimeters - Date: indicates the calendar date for the measurements - GrowRefDate: indicates the date 40 days after the hatching date - Surv0: indicates whether or not the nestling survived to the next age category. 0 indicates death and 1 indicates survival -Weight2: The mass of the nestling mean centered and scaled to units of standard deviation - Wing 2: The wing length of the nestling mean centered and scaled to units of standard deviation <br> CSV files ending in 1 include environmental data - pdo1: Pacific decadal oscillation during the current breeding season - pdo2: Pacific decadal oscillation from two years prior to the breeding season - AirWin: Minimum air temperature during the breeding season in degrees celsius -SSTWin: Average sea-surface temperature during the breeding season <br> See the below references for details on the environmental variables <br> Sauve, D., Charmantier, A., Hatch, S. A., & Friesen, V. L. (2022).Environmental conditions variably affect growth across the breeding season in a subarctic seabird. Oecologia, 198, 307–318 <br> Whelan, S., Hatch, S. A., Gaston, A. J., Gilchrist, H. G., & Elliott, K. H. (2022). Opposite, but insufficient, phenological responses to climate in two circumpolar seabirds: Relative roles of phenotypic plasticity and selection. Functional Ecology, 36,1782–1795. <br> The RMarkdown file includes code to run the models of selection in the manuscript. <br>
DOI: 10.6084/m9.figshare.21743759.v1
title: Data and Code Associated with Sauve et al. Evol Letters

description: Included is the dataset used to measure selection gradients for mass and wing length across the ontogeny of nestling black-legged kittiwakes on Middleton Island, Alaska. <br> Each .csv file includes the following variables for age specific observations of nestling black-legged kittiwakes. The number after ALL indicates the age observations were taken and a number 1 following the age is the dataset that includes environmental predictors. For example hatching masses are all included in the ALL0.csv and age 5 masses are all included in the ALL5.csv. ALL01 is the file that includes environmental predictors for survival from age 0 days (hatching) to age 5 days. ALL051 would be the file that includes environmental predictors of survival from age 5 days to age 10 days. <br> <br> - Year: indicates the year of measurement - Treatment: indicates the food supplementation treatment of the nestling observations were recorded for. fed equals food supplemented and unfed equals non-food supplemented. - Rank: indicates that hatching rank of the nestling. a equals first hatched and b indicates second-hatched - Age: indicates the age of mass and wing-length measurement - Weight: The mass measurement in grams - Wing: The wing length measurement of a nestling in millimeters - Date: indicates the calendar date for the measurements - GrowRefDate: indicates the date 40 days after the hatching date - Surv0: indicates whether or not the nestling survived to the next age category. 0 indicates death and 1 indicates survival -Weight2: The mass of the nestling mean centered and scaled to units of standard deviation - Wing 2: The wing length of the nestling mean centered and scaled to units of standard deviation <br> CSV files ending in 1 include environmental data - pdo1: Pacific decadal oscillation during the current breeding season - pdo2: Pacific decadal oscillation from two years prior to the breeding season - AirWin: Minimum air temperature during the breeding season in degrees celsius -SSTWin: Average sea-surface temperature during the breeding season <br> See the below references for details on the environmental variables <br> Sauve, D., Charmantier, A., Hatch, S. A., & Friesen, V. L. (2022).Environmental conditions variably affect growth across the breeding season in a subarctic seabird. Oecologia, 198, 307–318 <br> Whelan, S., Hatch, S. A., Gaston, A. J., Gilchrist, H. G., & Elliott, K. H. (2022). Opposite, but insufficient, phenological responses to climate in two circumpolar seabirds: Relative roles of phenotypic plasticity and selection. Functional Ecology, 36,1782–1795. <br> The RMarkdown file includes code to run the models of selection in the manuscript. <br>
DOI: 10.5281/zenodo.7689859
title: Transient deformation excited by the 2021 M7.4 Maduo (China) earthquake: Evidence of a deeper shear zone

description: This file contains Sentinel-1 and ALOS-2 InSAR observations one year following the 2021 Maduo earthquake, and three-year GNSS observations from 2019 to 2022 that also spans the Maduo earthquake.
DOI: 10.5281/zenodo.7689858
title: Transient deformation excited by the 2021 M7.4 Maduo (China) earthquake: Evidence of a deeper shear zone

description: This file contains Sentinel-1 and ALOS-2 InSAR observations one year following the 2021 Maduo earthquake, and three-year GNSS observations from 2019 to 2022 that also spans the Maduo earthquake.
DOI: 10.5281/zenodo.7689869
title: APIContext2Com Dataset

description: The directory contains the original and clean dataset as well as the API documentation
DOI: 10.5281/zenodo.7689868
title: APIContext2Com Dataset

description: The directory contains the original and clean dataset as well as the API documentation
DOI: 10.6084/m9.figshare.21534399
title: Wheat milling and baking quality phenotype data

description: Phenotypic data for multiple wheat milling and baking quality traits as described in the publication 'Maintenance of UK Bread Baking Quality: Trends in Wheat Quality Traits Over 50 Years of Breeding and Potential for Future Application of Genomic-assisted Selection'. Genotype IDs are randomly anonymised due to commercial sensitivity of the data.
DOI: 10.6084/m9.figshare.21534399.v1
title: Wheat milling and baking quality phenotype data

description: Phenotypic data for multiple wheat milling and baking quality traits as described in the publication 'Maintenance of UK Bread Baking Quality: Trends in Wheat Quality Traits Over 50 Years of Breeding and Potential for Future Application of Genomic-assisted Selection'. Genotype IDs are randomly anonymised due to commercial sensitivity of the data.
DOI: 10.6084/m9.figshare.21534333
title: Imputed genetic marker data

description: Imputed SNP marker data for a panel of wheat genotypes as described in the publication 'Maintenance of UK Bread Baking Quality: Trends in Wheat Quality Traits Over 50 Years of Breeding and Potential for Future Application of Genomic-assisted Selection'. Marker names and genotype ID have been randomly anonymised due to commercial sensitivity of the data.
DOI: 10.25810/v575-3r57.51
title: Japanese Newspaper Coverage of Climate Change or Global Warming, 2000-2023 - January 2023

description: The Media and Climate Change Observatory Data monitors 126 sources (across newspapers, radio and TV) in 58 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.22186420
title: Source data.xlsx

description: The dataset is for the paper: <strong>3D Printing and Processing of Miniaturized Transducers with Near-pristine Piezoelectric Ceramics for Localized Cavitation</strong>
DOI: 10.6084/m9.figshare.22186420.v1
title: Source data.xlsx

description: The dataset is for the paper: <strong>3D Printing and Processing of Miniaturized Transducers with Near-pristine Piezoelectric Ceramics for Localized Cavitation</strong>
DOI: 10.25810/yr7w-5c22.4
title: Korean Newspaper Coverage of Climate Change or Global Warming, 2000-2023 - January 2023

description: The Media and Climate Change Observatory Data monitors 130 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.21453843
title: Genome assembly

description: Genome assembly for Chrysomela aeneicollis
DOI: 10.6084/m9.figshare.21453843.v1
title: Genome assembly

description: Genome assembly for Chrysomela aeneicollis
DOI: 10.6084/m9.figshare.21453852
title: Genome annotation

description: Genome annotation for<em> Chrysomela aeneicollis</em>
DOI: 10.6084/m9.figshare.21453852.v1
title: Genome annotation

description: Genome annotation for<em> Chrysomela aeneicollis</em>
DOI: 10.25345/c59z90n6s
title: MassIVE MSV000091387 - Human Milk Oligosaccharide Suppression of Carbapenam Resistance in Clinical Isolates of Acinetobacter baumannii
title: Human breast milk has long been coveted as the gold standard for infant nutrition. Containing a heterogenous mixture of fats, proteins, and other necessary nutrients, breast milk supplies complete nutrition to the neonate up to two years of life. Among the bioactive molecules found in human breast milk are human milk oligosaccharides (HMOs). While not digestible by the infant, these sugar molecules are widely known to promote the growth of commensal bacteria in the infant gut while suppressing the growth of pathogenic bacteria. We previously characterized the impressive antimicrobial and antibiofilm activities of these molecules with gram positive pathogens at length. Interestingly, we have recently found that while the robust antibiofilm phenotype persists, HMOs possess no antimicrobial power over Acinetobacter baumannii, an urgently threatening gram-negative pathogen. Biofilm-inhibiting compounds have recently gained attention as a potential chemotherapeutic strategy to prevent or dismantle A. baumannii biofilms and restore the utility of antimicrobial strategies. Recent work indicates that HMOs have potent antibacterial and biofilm-inhibiting properties against a bank of A. baumannii clinical isolates. Therefore, we sought to test the utility of HMOs as antibiotic adjuvants against the multidrug resistant isolates of A. baumannii to underscore the impact of biofilm formation on the antimicrobial resistance crisis. Our results indicate that the potent antibiofilm activity of HMOs confounds antimicrobial resistance mechanisms within this gram-negative pathogen to revive otherwise ineffective antibiotics, including various carbapenems, a last line of defense antibiotic class for these types of infections. We report here the impressive utility of this therapeutic activity, a proteomic analysis revealing the acetoin pathway as an important determinant in HMO-microbe-host interactions, and other discovery strategies used to underscore the molecular underpinnings governing HMO-bacterial interactions. Preliminary evidence suggests that HMOs may be the light at the end of an exhausting tunnel of antimicrobial resistance.
DOI: 10.25810/5dxz-xm93.58
title: Latin American Newspaper Coverage of Climate Change or Global Warming, 2005-2023 - January 2023

description: The Media and Climate Change Observatory Data monitors 126 sources (across newspapers, radio and TV) in 58 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.5519/qd.4xixqxt0
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (60 records)
DOI: 10.34740/kaggle/dsv/5090304
title: Cyclistic 2022 Cleaned
DOI: 10.6084/m9.figshare.22183486
title: Ipsilaterally projecting RGC axons (swc, part 2)

description: Reconstructions (swc files, part 2) of ipsilaterally projecting RGC axons electroporated with anti-sense morpholinos and/or EGFP from 3D images acquired using <em>in vivo</em> multi-photon mictroscopy every 10 minutes over 4 or 5 hours in darkness, asynchronous and synchronous stimulation as described in the linked preprint. Mastersheets corresponding to Figure 1 and Figure 2 of the preprint matching the file name with the metadata, including BDNF signaling manipulation, as well as information on missing or extra time points.
DOI: 10.5281/zenodo.7689912
title: Political, economic, and governance attitudes of blockchain users

description: Survey responses for academic publication "Political, economic, and governance attitudes of blockchain users"
DOI: 10.5281/zenodo.7689911
title: Political, economic, and governance attitudes of blockchain users

description: Survey responses for academic publication "Political, economic, and governance attitudes of blockchain users"
DOI: 10.25345/c56688v3f
title: MassIVE MSV000091388 - Global analysis of post-translational sidechain arginylation using pan-arginylation antibodies
title: Arginylation is a post-translational modification mediated by the arginyltransferase ATE1, which transfers the amino acid arginine to a protein or peptide substrate from a tRNA molecule. Initially, arginylation was thought to occur only on N-terminally exposed acidic residues, and its function was thought to be limited to targeting proteins for degradation. However, more recent data has shown that ATE1 can arginylate sidechains of internal acidic residues in a protein without necessarily affecting metabolic stability. This greatly expands the potential targets and functions of arginylation, but tools for studying this process have remained limited. Here, we report the first global screen specifically for sidechain arginylation. We generate and validate pan-arginylation antibodies, which are designed to detect sidechain arginylation in any amino acid sequence context. We use these antibodies for immunoaffinity enrichment of sidechain arginylated proteins from wildtype and Ate1 knockout cell lysates. In this way, we identify a limited set of proteins that likely undergo ATE1-dependent sidechain arginylation and that are enriched in specific cellular roles, including translation, splicing, and the cytoskeleton.
DOI: 10.25345/c52f7k18m
title: MassIVE MSV000091389 - The HLA class-I immunopeptidomes of AAV capsid proteins
title: Introduction: Cellular immunity is one of the main factors affecting sustained expression of gene therapies. AAV capsid-specific CD8+ T cells recognize peptides that are loaded on HLA class I molecules by cells that have been infected or transduced with AAVs. Previous studies performed by others have identified several peptides that activate CD8+ T cells, however the entire repertoire of naturally displayed peptides is unknown. Methods: Using MHC-associated peptide proteomics, we describe the HLA class I immunopeptidomes of AAV2, AAV6 and AAV9 capsids. Monocyte-derived dendritic cells (MDDCs) were isolated from a panel of 13 healthy donors that have diverse alleles representing more than 50% of the US population. MDDCs were transfected with mRNA encoding for the different AAV capsids. 6 hours post transfection, cells were lysed and peptide:HLA complexes were immunoprecipitated. Peptides were eluted and analyzed by mass spectrometry and PEAKS bioinformatic algorithms. Results: The HLA-I peptides are distributed along the entire capsids but the number of AAV9-derived peptides was significantly higher than for AAV2 or AAV6. We identified a few peptides that had been described before and are immunogenic. We also observed 14 peptides that are highly conserved among the serotypes. Finally, we observed that more than 60% of the HLA-I peptides are contained within HLA-II clusters. Discussion: This work is the first comprehensive study identifying the naturally displayed HLA class I peptides derived from the capsid of AAVs and expands on previous studies that have identified immunogenic peptides. The results from this study can be used to generate peptide pools to assess immunogenicity risk of gene therapies in the clinic.
DOI: 10.34740/kaggle/dsv/5090440
title: Cyclistic 2022 Cleaned
DOI: 10.25919/tm4m-5a46
title: Curated Plant and Invertebrate Data for Bushfire Modelling

description: This data asset contains observations of individual plants and animals (“occurrences”) sourced from the Atlas of Living Australia. Data on vascular plants are based on the following paper: Godfree et al. (2021) Implications of the 2019-2020 Megafires for the Biogeography and Conservation of Australian Vegetation. Nature Communications 12: 1023 https://doi.org/10.1038/s41467-021-21266-5 Data on invertebrates are from the following report: Marsh et al. (2021) Threatened species hub report: Assessment of the impacts of the 2019-20 wildfires on southern and eastern Australia on invertebrate species. NESP Threatened Species Recovery Hub Project 8.3.1 Final report, Brisbane. Both studies were performed to understand the impacts of the Australian “Black Summer” (2019-20) fires on the taxonomic group in question. Consequently, this aggregated dataset is designed to support off-the-shelf bushfire impact modelling, and to provide useful context for associated biodiversity conservation work. A total of 896 species of vascular plants and 44,146 invertebrate species. The combined data asset was produced by the Science & Decision Support Team at the Atlas of living Australia (ALA) in collaboration with the authors of the original data sets. This was done as part of an Australian Research Data Commons (ARDC) bushfire data challenges project. The data contained in this deposition has been cleaned by researchers and taxonomists to ensure it is of high quality. Therefore, compared to data returned by the ALA, the unique record ID’s may return a different species or location than is denoted in this data set: these records have potentially been changed by the authors of the data to reflect what they believe is correct.
DOI: 10.6084/m9.figshare.19522255.v22
title: Data scientist search behaviour

description: The repo contains artifacts of survey study and interviews with data scientists on understanding their search behaviour in online resources.
DOI: 10.5281/zenodo.6726673
title: Population genomics reveals differences in genetic structure between two endemic arboreal rodent species in threatened cloud forest habitat

description: SNPs obtained by UNEAK pipeline for <em>Habromys schmidlyi </em>and <em>Reithrodontomys microdon</em>. Pleae cite as: Colunga-Salas P., T Marines-Macías, G Hernández-Canchola, S Barbosa, C Ramírez, JB Searle, L León-Paniagua. 2022. <strong>Population genomics reveals differences in genetic structure between two endemic arboreal rodent species in threatened cloud forest habitat</strong>. Mammalian Reasearch. Doi: 10.1007/s13364-022-00667-x
description: SNPs obtained by UNEAK pipeline for Habromys schmidlyi and Reithrodontomys microdon
description: {"references": ["Colunga-Salas P.,\u00a0T Marines-Mac\u00edas,\u00a0G Hern\u00e1ndez-Canchola,\u00a0S\u00a0Barbosa,\u00a0C\u00a0Ram\u00edrez,\u00a0JB\u00a0Searle,\u00a0L\u00a0Le\u00f3n-Paniagua. 2022.\u00a0Population genomics reveals differences in genetic structure between two endemic arboreal rodent species in threatened cloud forest habitat. Mammalian Reasearch. Doi: 10.1007/s13364-022-00667-x"]}