cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14435042.v1
title: Additional file 4 of Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria

description: Additional file 4:Distribution of the gene encoding KDPGal aldolase in non-host-associated (free-living) Bacteria. (XLS 47 KB)
DOI: 10.6084/m9.figshare.14435045.v1
title: Additional file 5 of Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria

description: Additional file 5:Distribution of the gene encoding KDPGal aldolase in host- associated Bacteria. (XLS 79 KB)
DOI: 10.6084/m9.figshare.14435045
title: Additional file 5 of Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria

description: Additional file 5:Distribution of the gene encoding KDPGal aldolase in host- associated Bacteria. (XLS 79 KB)
DOI: 10.6084/m9.figshare.14435048
title: Additional file 6 of Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria

description: Additional file 6:Distribution of the gene encoding KDPGal aldolase in Archaea. (XLS 28 KB)
DOI: 10.6084/m9.figshare.14435048.v1
title: Additional file 6 of Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria

description: Additional file 6:Distribution of the gene encoding KDPGal aldolase in Archaea. (XLS 28 KB)
DOI: 10.6084/m9.figshare.14435051
title: Additional file 7 of Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria

description: Additional file 7:Comparison of the distribution of the shikimic acid pathway in 85 non-host associated bacteria using HMM and BioCyc database searching. (XLS 62 KB)
DOI: 10.6084/m9.figshare.14435027.v1
title: Additional file 1 of Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria

description: Additional file 1:Distribution of genes encoding enzymes of the shikimic acid pathway in non-host associated (free-living) Bacteria. (XLS 156 KB)
DOI: 10.6084/m9.figshare.14435057
title: Additional file 9 of Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria

description: Additional file 9:Comparison of the distribution of the shikimic acid pathway in 33 Archaea using HMM and BioCyc database searching. (XLS 38 KB)
DOI: 10.6084/m9.figshare.14435051.v1
title: Additional file 7 of Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria

description: Additional file 7:Comparison of the distribution of the shikimic acid pathway in 85 non-host associated bacteria using HMM and BioCyc database searching. (XLS 62 KB)
DOI: 10.6084/m9.figshare.14435054.v1
title: Additional file 8 of Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria

description: Additional file 8:Comparison of the distribution of the shikimic acid pathway in 204 host-associated bacteria using HMM and BioCyc database searching. (XLS 116 KB)
DOI: 10.6084/m9.figshare.14435057.v1
title: Additional file 9 of Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria

description: Additional file 9:Comparison of the distribution of the shikimic acid pathway in 33 Archaea using HMM and BioCyc database searching. (XLS 38 KB)
DOI: 10.6084/m9.figshare.14435060
title: Additional file of Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria

description: Additional file of Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria
DOI: 10.6084/m9.figshare.14435060.v17
title: Additional file of Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria

description: Additional file of Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria
DOI: 10.6084/m9.figshare.14435054
title: Additional file 8 of Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria

description: Additional file 8:Comparison of the distribution of the shikimic acid pathway in 204 host-associated bacteria using HMM and BioCyc database searching. (XLS 116 KB)
DOI: 10.6084/m9.figshare.14435060.v16
title: Additional file of Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria

description: Additional file of Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria
DOI: 10.6084/m9.figshare.14435111.v7
title: Additional file of Comparative genomics of prevaccination and modern Bordetella pertussis strains

description: Additional file of Comparative genomics of prevaccination and modern Bordetella pertussis strains
DOI: 10.6084/m9.figshare.14435111.v9
title: Additional file of Comparative genomics of prevaccination and modern Bordetella pertussis strains

description: Additional file of Comparative genomics of prevaccination and modern Bordetella pertussis strains
DOI: 10.6084/m9.figshare.14435111.v10
title: Additional file of Comparative genomics of prevaccination and modern Bordetella pertussis strains

description: Additional file of Comparative genomics of prevaccination and modern Bordetella pertussis strains
DOI: 10.6084/m9.figshare.14435111.v12
title: Additional file of Comparative genomics of prevaccination and modern Bordetella pertussis strains

description: Additional file of Comparative genomics of prevaccination and modern Bordetella pertussis strains
DOI: 10.6084/m9.figshare.14435111.v13
title: Additional file of Comparative genomics of prevaccination and modern Bordetella pertussis strains

description: Additional file of Comparative genomics of prevaccination and modern Bordetella pertussis strains
DOI: 10.6084/m9.figshare.14435111.v11
title: Additional file of Comparative genomics of prevaccination and modern Bordetella pertussis strains

description: Additional file of Comparative genomics of prevaccination and modern Bordetella pertussis strains
DOI: 10.6084/m9.figshare.14435084
title: Additional file 1 of Comparative genomics of prevaccination and modern Bordetella pertussis strains

description: Additional file 1: Supplementary table S1A & S1B & S1C.xlsx. Contains a list of SNPs, small insertions and deletions found in the analyzed genomes. (XLSX 127 KB)
DOI: 10.6084/m9.figshare.14435084.v1
title: Additional file 1 of Comparative genomics of prevaccination and modern Bordetella pertussis strains

description: Additional file 1: Supplementary table S1A & S1B & S1C.xlsx. Contains a list of SNPs, small insertions and deletions found in the analyzed genomes. (XLSX 127 KB)
DOI: 10.6084/m9.figshare.14435090
title: Additional file 3 of Comparative genomics of prevaccination and modern Bordetella pertussis strains

description: Additional file 3: Supplementary table S2.xlsx. Shows large Regions of Difference (RDs) between the analyzed genomes. (XLSX 15 KB)
DOI: 10.6084/m9.figshare.14435096.v1
title: Additional file 5 of Comparative genomics of prevaccination and modern Bordetella pertussis strains

description: Additional file 5: Supplementary table S4.xlsx. Shows allelic polymorphisms found in pathogenicity-associated genes (XLSX 22 KB)
DOI: 10.6084/m9.figshare.14435090.v1
title: Additional file 3 of Comparative genomics of prevaccination and modern Bordetella pertussis strains

description: Additional file 3: Supplementary table S2.xlsx. Shows large Regions of Difference (RDs) between the analyzed genomes. (XLSX 15 KB)
DOI: 10.6084/m9.figshare.14435093.v1
title: Additional file 4 of Comparative genomics of prevaccination and modern Bordetella pertussis strains

description: Additional file 4: Supplementary table S3.xlsx. Shows functional gene categories. (XLSX 155 KB)
DOI: 10.6084/m9.figshare.14435099.v1
title: Additional file 6 of Comparative genomics of prevaccination and modern Bordetella pertussis strains

description: Additional file 6: Supplementary table S5.xlsx. Shows alleles which distinguish strains isolated before and after the introduction of vaccination (XLSX 28 KB)
DOI: 10.6084/m9.figshare.14435093
title: Additional file 4 of Comparative genomics of prevaccination and modern Bordetella pertussis strains

description: Additional file 4: Supplementary table S3.xlsx. Shows functional gene categories. (XLSX 155 KB)
DOI: 10.6084/m9.figshare.14435102.v1
title: Additional file 7 of Comparative genomics of prevaccination and modern Bordetella pertussis strains

description: Additional file 7: Supplementary table S6.xlsx. Shows alleles unique for one or both ptxP3 strains (XLSX 32 KB)
DOI: 10.6084/m9.figshare.14435102
title: Additional file 7 of Comparative genomics of prevaccination and modern Bordetella pertussis strains

description: Additional file 7: Supplementary table S6.xlsx. Shows alleles unique for one or both ptxP3 strains (XLSX 32 KB)
DOI: 10.6084/m9.figshare.14435099
title: Additional file 6 of Comparative genomics of prevaccination and modern Bordetella pertussis strains

description: Additional file 6: Supplementary table S5.xlsx. Shows alleles which distinguish strains isolated before and after the introduction of vaccination (XLSX 28 KB)
DOI: 10.6084/m9.figshare.14435096
title: Additional file 5 of Comparative genomics of prevaccination and modern Bordetella pertussis strains

description: Additional file 5: Supplementary table S4.xlsx. Shows allelic polymorphisms found in pathogenicity-associated genes (XLSX 22 KB)
DOI: 10.6084/m9.figshare.14435168.v8
title: Additional file of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset

description: Additional file of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset
DOI: 10.6084/m9.figshare.14435168.v11
title: Additional file of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset

description: Additional file of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset
DOI: 10.6084/m9.figshare.14435168.v10
title: Additional file of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset

description: Additional file of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset
DOI: 10.6084/m9.figshare.14435168.v14
title: Additional file of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset

description: Additional file of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset
DOI: 10.6084/m9.figshare.14435168.v12
title: Additional file of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset

description: Additional file of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset
DOI: 10.6084/m9.figshare.14435135.v1
title: Additional file 1 of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset

description: Additional file 1:Table S1. Top similarities at the regional level using R1. Each of the top regions was compared against all regions from the genome with lower recombination rate if the region is lower than average, or higher recombination rate if the region is higher than average. On the far right, we see what results would look like using the more homogeneous subset (803 couples of Western European descent) of the population (see Methods). (XLS 38 KB)
DOI: 10.6084/m9.figshare.14435141.v1
title: Additional file 3 of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset

description: Additional file 3:Table S2. Genome-wide SNP-level results. Approximately 4,000 most highly correlated SNPs among the 930 IMSGC couples. This includes positive and negative correlation. All SNPs with a one-tailed p value of 0.01 or better are highlighted by filter. (XLS 820 KB)
DOI: 10.6084/m9.figshare.14435141
title: Additional file 3 of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset

description: Additional file 3:Table S2. Genome-wide SNP-level results. Approximately 4,000 most highly correlated SNPs among the 930 IMSGC couples. This includes positive and negative correlation. All SNPs with a one-tailed p value of 0.01 or better are highlighted by filter. (XLS 820 KB)
DOI: 10.6084/m9.figshare.14435144
title: Additional file 4 of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset

description: Additional file 4:Table S3. Top similarities at the regional level using Fisher values. Regions exhibiting an abundance of significantly similar SNPs (R2 &gt; 0). (XLS 26 KB)
DOI: 10.6084/m9.figshare.14435147
title: Additional file 5 of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset

description: Additional file 5:Table S4. Top dissimilarities at the regional level using Fisher values. Regions exhibiting an abundance of significantly dissimilar SNPs (R2 &lt; 0). (XLS 30 KB)
DOI: 10.6084/m9.figshare.14435135
title: Additional file 1 of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset

description: Additional file 1:Table S1. Top similarities at the regional level using R1. Each of the top regions was compared against all regions from the genome with lower recombination rate if the region is lower than average, or higher recombination rate if the region is higher than average. On the far right, we see what results would look like using the more homogeneous subset (803 couples of Western European descent) of the population (see Methods). (XLS 38 KB)
DOI: 10.6084/m9.figshare.14435159
title: Additional file 7 of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset

description: Additional file 7:Table S5. IMAGEN regional p values. Regional scoring of the 3 MHC classes (Fisher meta value) was done in the same manner as the IMSGC. P values are obtained by shuffling couples 50,000 times. (XLS 22 KB)
DOI: 10.6084/m9.figshare.14435165
title: Additional file 9 of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset

description: Additional file 9:Table S7. Multiple-Sclerosis-associated SNPs. Spousal identity (R2) and uncorrected p-value for 11 SNPs associated with multiple sclerosis. After correction for 11 multiple comparisons, the spousal identity is not statistically significant. (XLS 55 KB)
DOI: 10.6084/m9.figshare.14435144.v1
title: Additional file 4 of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset

description: Additional file 4:Table S3. Top similarities at the regional level using Fisher values. Regions exhibiting an abundance of significantly similar SNPs (R2 &gt; 0). (XLS 26 KB)
DOI: 10.6084/m9.figshare.14435165.v1
title: Additional file 9 of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset

description: Additional file 9:Table S7. Multiple-Sclerosis-associated SNPs. Spousal identity (R2) and uncorrected p-value for 11 SNPs associated with multiple sclerosis. After correction for 11 multiple comparisons, the spousal identity is not statistically significant. (XLS 55 KB)
DOI: 10.6084/m9.figshare.14435168
title: Additional file of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset

description: Additional file of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset
DOI: 10.6084/m9.figshare.14435168.v16
title: Additional file of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset

description: Additional file of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset
DOI: 10.6084/m9.figshare.14435147.v1
title: Additional file 5 of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset

description: Additional file 5:Table S4. Top dissimilarities at the regional level using Fisher values. Regions exhibiting an abundance of significantly dissimilar SNPs (R2 &lt; 0). (XLS 30 KB)
DOI: 10.6084/m9.figshare.14435159.v1
title: Additional file 7 of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset

description: Additional file 7:Table S5. IMAGEN regional p values. Regional scoring of the 3 MHC classes (Fisher meta value) was done in the same manner as the IMSGC. P values are obtained by shuffling couples 50,000 times. (XLS 22 KB)
DOI: 10.6084/m9.figshare.14435204.v3
title: Additional file of Transcriptomic analysis of the temporal host response to skin infestation with the ectoparasitic mite Psoroptes ovis

description: Additional file of Transcriptomic analysis of the temporal host response to skin infestation with the ectoparasitic mite Psoroptes ovis
DOI: 10.6084/m9.figshare.14435177.v1
title: Additional file 1 of Transcriptomic analysis of the temporal host response to skin infestation with the ectoparasitic mite Psoroptes ovis

description: Additional file 1:Gene lists for individual clusters. The file contains the list of genes represented in each of the individual gene expression clusters described in the text. This file includes gene symbol annotation where available, Agilent probe ID, fold change data for each gene at each time point compared to baseline (Time = 0) and the Benjamini & Hochberg FDR corrected p-values for each individual probe. (XLSX 133 KB)
DOI: 10.6084/m9.figshare.14435177
title: Additional file 1 of Transcriptomic analysis of the temporal host response to skin infestation with the ectoparasitic mite Psoroptes ovis

description: Additional file 1:Gene lists for individual clusters. The file contains the list of genes represented in each of the individual gene expression clusters described in the text. This file includes gene symbol annotation where available, Agilent probe ID, fold change data for each gene at each time point compared to baseline (Time = 0) and the Benjamini & Hochberg FDR corrected p-values for each individual probe. (XLSX 133 KB)
DOI: 10.5281/zenodo.4686551
title: SeisSol and samoa-flash model setup and data input files for the 3D linked subduction, dynamic rupture, tsunami and inundation modeling of Wirp et al.

description: Data required to run the dynamic rupture and tsunami models presented in Wirp, S. A., Gabriel, A.-A., Schmeller, M., van Zelst, I., Krenz, L., van Dinther, Y., Rannabauer, L. (2021). The README.txt file contains detailed information about the data and data format.
DOI: 10.5281/zenodo.4686550
title: SeisSol and samoa-flash model setup and data input files for the 3D linked subduction, dynamic rupture, tsunami and inundation modeling of Wirp et al.

description: Data required to run the dynamic rupture and tsunami models presented in Wirp, S. A., Gabriel, A.-A., Schmeller, M., van Zelst, I., Krenz, L., van Dinther, Y., Rannabauer, L. (2021). The README.txt file contains detailed information about the data and data format.
DOI: 10.5281/zenodo.4697058
title: Experiment outcome

description: Data-sets with calculated statistical values of the real performance on the field.
DOI: 10.5281/zenodo.4697057
title: Experiment outcome

description: Data-sets with calculated statistical values of the real performance on the field.
DOI: 10.6084/m9.figshare.14435360.v2
title: Additional file of Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions

description: Additional file of Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions
DOI: 10.6084/m9.figshare.14435360.v4
title: Additional file of Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions

description: Additional file of Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions
DOI: 10.6084/m9.figshare.14435360.v3
title: Additional file of Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions

description: Additional file of Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions
DOI: 10.6084/m9.figshare.14435339
title: Additional file 3 of Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions

description: Additional file 3:Excel spreadsheet containing the gene names of the effectomes of extremely optimized Bacteria. (XLS 1 MB)
DOI: 10.6084/m9.figshare.14435339.v1
title: Additional file 3 of Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions

description: Additional file 3:Excel spreadsheet containing the gene names of the effectomes of extremely optimized Bacteria. (XLS 1 MB)
DOI: 10.6084/m9.figshare.14435336
title: Additional file 2 of Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions

description: Additional file 2:Excel spreadsheets listing the composition of effectomes for all habitats on FunCat level 2. (XLS 860 KB)
DOI: 10.6084/m9.figshare.14435336.v1
title: Additional file 2 of Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions

description: Additional file 2:Excel spreadsheets listing the composition of effectomes for all habitats on FunCat level 2. (XLS 860 KB)
DOI: 10.6084/m9.figshare.14435342
title: Additional file 4 of Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions

description: Additional file 4:Excel spreadsheet containing the COG- and KO-numbers of genes from the effectomes of extremely optimized Bacteria. (XLS 234 KB)
DOI: 10.6084/m9.figshare.14435342.v1
title: Additional file 4 of Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions

description: Additional file 4:Excel spreadsheet containing the COG- and KO-numbers of genes from the effectomes of extremely optimized Bacteria. (XLS 234 KB)