cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28255466
title: The phylogenetic position of the extinct Hawaiian honeyeaters: Overcoming the limitations of historical DNA

description: Mohoidae, the Hawaiian honeyeaters, are a group of extinct birds that once inhabited the Hawaiian Islands. Their genetic data are only available from historical museum specimens, thus can be highly fragmented and damaged. Poor sequence recovery in historical samples can bias phylogenetic inference, which often results in exceptionally long terminal branches in the phylogeny. These long branches can distort estimates of phylogeny, an artifact known as long branch attraction. However, these long branches are typically artifactual, reflecting DNA quality, so the best way to analyze this data is unclear. We investigated the position of the extinct Mohoidae within the superfamily Bombycilloidea using published alignments of ultraconserved elements (UCEs) and re-assembled UCEs from raw sequencing reads. The uncertainty involves two monotypic families (Hypocoliidae and Hylocitreidae). Re-aligning UCEs using a smaller taxon set closely related to Mohoidae, along with edge trimming and reassembly, eliminated the long branches of Mohoidae and Hypocoliidae (also represented by an historical sample). The sister relationship of these two families in previous studies appears to be artifactual; instead, our new analyses yielded congruent topologies that placed Mohoidae as sister to the clade comprising Hypocoliidae and Hylocitreidae. We also found that different assemblers (SPAdes vs Trinity) yielded sequences with conflicts towards the ends of the UCEs, especially for the historical samples, although this did not alter the topology. Finally, combining the UCE data with legacy data allowed us to produce a strongly supported complete phylogeny of Bombycilloidea the included all extant species as well as the extinct Mohoidae.
DOI: 10.6084/m9.figshare.28255466.v2
title: The phylogenetic position of the extinct Hawaiian honeyeaters: Overcoming the limitations of historical DNA

description: Mohoidae, the Hawaiian honeyeaters, are a group of extinct birds that once inhabited the Hawaiian Islands. Their genetic data are only available from historical museum specimens, thus can be highly fragmented and damaged. Poor sequence recovery in historical samples can bias phylogenetic inference, which often results in exceptionally long terminal branches in the phylogeny. These long branches can distort estimates of phylogeny, an artifact known as long branch attraction. However, these long branches are typically artifactual, reflecting DNA quality, so the best way to analyze this data is unclear. We investigated the position of the extinct Mohoidae within the superfamily Bombycilloidea using published alignments of ultraconserved elements (UCEs) and re-assembled UCEs from raw sequencing reads. The uncertainty involves two monotypic families (Hypocoliidae and Hylocitreidae). Re-aligning UCEs using a smaller taxon set closely related to Mohoidae, along with edge trimming and reassembly, eliminated the long branches of Mohoidae and Hypocoliidae (also represented by an historical sample). The sister relationship of these two families in previous studies appears to be artifactual; instead, our new analyses yielded congruent topologies that placed Mohoidae as sister to the clade comprising Hypocoliidae and Hylocitreidae. We also found that different assemblers (SPAdes vs Trinity) yielded sequences with conflicts towards the ends of the UCEs, especially for the historical samples, although this did not alter the topology. Finally, combining the UCE data with legacy data allowed us to produce a strongly supported complete phylogeny of Bombycilloidea the included all extant species as well as the extinct Mohoidae.
DOI: 10.6084/m9.figshare.28255466.v1
title: <b>The phylogenetic position of the extinct Hawaiian honeyeaters: Overcoming the limitations of antique DNA</b>

description: Mohoidae, the Hawaiian honeyeaters, are a group of extinct birds that once inhabited the Hawaiian Islands. Their genetic data are only available from historical museum specimens, thus can be highly fragmented and damaged. Poor sequence recovery in antique samples can bias phylogenetic inference, which often results in exceptionally long terminal branches in the phylogeny. These long branches can distort estimates of phylogeny, an artifact known as long branch attraction. However, these long branches are typically artifactual, reflecting DNA quality, so the best way to analyze this data is unclear. We investigated the position of the extinct Mohoidae within the superfamily Bombycilloidea using published alignments of ultraconserved elements (UCEs) and re-assembled UCEs from raw sequencing reads. The uncertainty involves two monotypic families (Hypocoliidae and Hylocitreidae). Re-aligning UCEs using a smaller taxon set closely related to Mohoidae, along with edge trimming and reassembly, eliminated the long branches of Mohoidae and Hypocoliidae (also represented by an antique sample). The sister relationship of these two families in previous studies appears to be artifactual; instead, our new analyses yielded congruent topologies that placed Mohoidae as sister to the clade comprising Hypocoliidae and Hylocitreidae. We also found that different assemblers (SPAdes vs Trinity) yielded sequences with conflicts towards the ends of the UCEs, especially for the antique samples, although this did not alter the topology. Finally, combining the UCE data with legacy data allowed us to produce a strongly supported complete phylogeny of Bombycilloidea the included all extant species as well as the extinct Mohoidae.
DOI: 10.5281/zenodo.18417176
title: TURIZM SOHASIDA MADANIYATLARARO MULOQOTNI

description: Ushbu maqolada turizm sohasidagi madaniyatlararo muloqotning ahamiyati va uni rivojlantirishning zamonaviy usullari ko'rib chiqiladi. Tadqiqotda innovatsion usullardan, jumladan, sun'iy intellekt, virtual borliq texnologiyalari va madaniy, lingvistik to'siqlarni bartaraf etish bo'yicha tavsiyalar berilgan.
DOI: 10.5281/zenodo.18417177
title: TURIZM SOHASIDA MADANIYATLARARO MULOQOTNI

description: Ushbu maqolada turizm sohasidagi madaniyatlararo muloqotning ahamiyati va uni rivojlantirishning zamonaviy usullari ko'rib chiqiladi. Tadqiqotda innovatsion usullardan, jumladan, sun'iy intellekt, virtual borliq texnologiyalari va madaniy, lingvistik to'siqlarni bartaraf etish bo'yicha tavsiyalar berilgan.
DOI: 10.15139/s3/6e2fqw
title: Data Management and Sharing Plan for: MODELING HIV MICROGLIA-ASSOCIATED INFECTION AND INFLAMMATION IN A CHIMERIC MOUSE BRAIN

description: The Data Management and Sharing Plan describes the scientific data to be generated and/or used in the research and outlines a strategy for managing and sharing project data.
description: Data Management and Sharing Plan
DOI: 10.15468/dl.6uusvp
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gesnouinia arborea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 42 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000180-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5k35mt3c
title: MassIVE MSV000100642 - Czajka_PPI_LipomycesStarkeyi_Metabolomics&Lipidomics
title: Metabolomics and lipidomics datasets for Lipomyces Starkeyi; growth on differnt media, time points : early and late exponential
DOI: 10.15468/dl.mxkn8d
title: Occurrence Download

description: A dataset containing 78631 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((12.56972 0.2560579, 14.18656 0.2560579, 14.18656 1.789562, 12.56972 1.789562, 12.56972 0.2560579))"
 ]
}

 The dataset includes 78631 records from 169 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000091-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbkprr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthocephalus gracilacanthus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000181-260129131611470/datasets/export for details.
DOI: 10.5258/soton/d3811
title: Skills for the Curation of Sensitive Data - Supporting files

description: This CSV file contains all data from the nationwide survey on skills and training for the curation of sensitive data. This is part of a UKRI DRI-funded research and training project led by Health Data Research UK (HDR-UK)
DOI: 10.5281/zenodo.18072129
title: Dataset for Bachelor Thesis "Análisis de la variabilidad del ritmo cardiaco: fiabilidad, relación con la edad y capacidad de caracterización individual de las medidas"

description: ___VERSIÓN ACTUALIZADA___

Este conjunto de datos incluye tanto la información empleada para el cálculo de los parámetros característicos de la variabilidad del ritmo cardiaco (Heart Rate Variability, HRV) como los resultados obtenidos de los indicadores correspondientes (ICC, CV, SEM y MDC) en función de la duración del registro ECG (para ello se utilizaron los ECGs disponibles en la base de datos ICENTIA11k).

Adicionalmente, se presentan los resultados de la detección de picos R en una base de datos específica (PTB Diagnostic ECG Database), obtenidos mediante la ejecución de una versión adaptada de la implementación del algoritmo Pan-Tompkins desarrollada por Hooman Sedghamiz en 2014, así como un documento que recoge la comparación entre la localización de picos R proporcionada por la otra base de datos empleada (ICENTIA11k; ficheros *.atr) y la estimada por dicho algoritmo.

-------------------------------------------------------------------------------------------------------------------------------------------------------------------

___UPDATED VERSION___

This dataset includes both the data used to compute the characteristic parameters of heart rate variability (HRV) and the results obtained from the corresponding indicators (ICC, CV, SEM, and MDC) as a function of the available ECG recording duration (for this purpose, the ECGs availiable in the database called ICENTIA11k were used).

In addition, it presents the results of R-peak detection on a specific database (PTB Diagnostic ECG Database), obtained by executing an adapted version of the Pan–Tompkins algorithm implementation developed by Hooman Sedghamiz in 2014, as well as a document comparing the R-peak locations provided by the other database used (ICENTIA11k; *.atr files) with those estimated by the algorithm.
DOI: 10.5281/zenodo.18088913
title: Dataset for Bachelor Thesis "Análisis de la variabilidad del ritmo cardiaco: fiabilidad, relación con la edad y capacidad de caracterización individual de las medidas"

description: ___VERSIÓN ACTUALIZADA___

Este conjunto de datos incluye tanto la información empleada para el cálculo de los parámetros característicos de la variabilidad del ritmo cardiaco (Heart Rate Variability, HRV) como los resultados obtenidos de los indicadores correspondientes (ICC, CV, SEM y MDC) en función de la duración del registro ECG (para ello se utilizaron los ECGs disponibles en la base de datos ICENTIA11k).

Adicionalmente, se presentan los resultados de la detección de picos R en una base de datos específica (PTB Diagnostic ECG Database), obtenidos mediante la ejecución de una versión adaptada de la implementación del algoritmo Pan-Tompkins desarrollada por Hooman Sedghamiz en 2014, así como un documento que recoge la comparación entre la localización de picos R proporcionada por la otra base de datos empleada (ICENTIA11k; ficheros *.atr) y la estimada por dicho algoritmo.

-------------------------------------------------------------------------------------------------------------------------------------------------------------------

___UPDATED VERSION___

This dataset includes both the data used to compute the characteristic parameters of heart rate variability (HRV) and the results obtained from the corresponding indicators (ICC, CV, SEM, and MDC) as a function of the available ECG recording duration (for this purpose, the ECGs availiable in the database called ICENTIA11k were used).

In addition, it presents the results of R-peak detection on a specific database (PTB Diagnostic ECG Database), obtained by executing an adapted version of the Pan–Tompkins algorithm implementation developed by Hooman Sedghamiz in 2014, as well as a document comparing the R-peak locations provided by the other database used (ICENTIA11k; *.atr files) with those estimated by the algorithm.
DOI: 10.5281/zenodo.18417216
title: BO`LAJAK O`QITUVCHILAR KASBIY TAYYORGARLIGINI TAKOMILLASHTIRISHDA ILG`OR XORIJIY VA MILLIY TAJRIBALARNING METODIK TAHLILI

description:  XXI asrda ta`lim sifati va samaradorligini oshirishning eng muhim omillaridan biri – pedagog kadrlar tayyorgarligini oshirishdir. O`qituvchi jamiyat taraqqiyotining tayanchi bo`lib, uning kasbiy mahorati va malakasi ta`lim jarayonining sifatini belgilaydi. Shu bois bugungi kunda dunyo mamlakatlarida bo`lajak o`qituvchilarni tayyorlash masalasi dolzarb ahamiyat kasb etmoqda. Fikrimizcha, pedagoglarni tayyorlash tizimini takomillashtirish orqaligina ta`lim jarayoniga yangicha fikrlaydigan, zamonaviy kompetensiyalarga ega mutaxassislarni jalb etish mumkin. O`zbekiston misolida ham mustaqillik yillarida bu yo`nalishda katta islohotlar amalga oshirildi: 1997-yilda qabul qilingan Kadrlar tayyorlash milliy dasturi uzluksiz ta`lim tizimini yaratib, pedagog kadrlar malakasini oshirishga zamin yaratdi. Keyingi yillarda qator qonun va qarorlar qabul qilinib, o`qituvchi kasbining nufuzi va tayyorgarlik sifati davlat siyosati darajasiga ko`tarildi.
DOI: 10.5281/zenodo.18417217
title: BO`LAJAK O`QITUVCHILAR KASBIY TAYYORGARLIGINI TAKOMILLASHTIRISHDA ILG`OR XORIJIY VA MILLIY TAJRIBALARNING METODIK TAHLILI

description:  XXI asrda ta`lim sifati va samaradorligini oshirishning eng muhim omillaridan biri – pedagog kadrlar tayyorgarligini oshirishdir. O`qituvchi jamiyat taraqqiyotining tayanchi bo`lib, uning kasbiy mahorati va malakasi ta`lim jarayonining sifatini belgilaydi. Shu bois bugungi kunda dunyo mamlakatlarida bo`lajak o`qituvchilarni tayyorlash masalasi dolzarb ahamiyat kasb etmoqda. Fikrimizcha, pedagoglarni tayyorlash tizimini takomillashtirish orqaligina ta`lim jarayoniga yangicha fikrlaydigan, zamonaviy kompetensiyalarga ega mutaxassislarni jalb etish mumkin. O`zbekiston misolida ham mustaqillik yillarida bu yo`nalishda katta islohotlar amalga oshirildi: 1997-yilda qabul qilingan Kadrlar tayyorlash milliy dasturi uzluksiz ta`lim tizimini yaratib, pedagog kadrlar malakasini oshirishga zamin yaratdi. Keyingi yillarda qator qonun va qarorlar qabul qilinib, o`qituvchi kasbining nufuzi va tayyorgarlik sifati davlat siyosati darajasiga ko`tarildi.
DOI: 10.5281/zenodo.18414593
title: Spatiotemoral dynamics neotropical felids
DOI: 10.5281/zenodo.18414592
title: Spatiotemoral dynamics neotropical felids
DOI: 10.15468/dl.8cgdmj
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gibbsia insignis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 37 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000182-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ak6pdm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthocephalus goaensis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000183-260129131611470/datasets/export for details.
DOI: 10.7284/164642
title: Multiplexed data collected during research cruise NBP2402 using a HOBI HydroDAS instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/164635
title: Expendable Probe data collected during research cruise NBP2402 using a Sippican MK12 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/164648
title: Fluorometer data collected during research cruise NBP2402 using a Turner 10-AU instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/164646
title: Gravimeter data collected during research cruise NBP2402 using a DgS AT1M instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/164641
title: Gyrocompass data collected during research cruise NBP2402 using a Yokogawa CMZ700B instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.18417251
title: АҲОЛИНИ РЎЙХАТГА ОЛИШНИНГ ЎЗИГА ХОС АҲАМИЯТИ

description: Аҳолини рўйхатга олиш Ўзбекистон Республикасининг ижтимоий-иқтисодий ривожланишида катта аҳамият касб этади. Аҳолини рўйхатга олиш маълумотларини таҳлил қилиш асосида олинган маълумотлардан соғлиқни сақлаш, таълим, уй-жой ва бандлик каби турли соҳаларда режалаштириш ва ривожланиш стратегияларини такомиллаштиришда фойдаланилади.
DOI: 10.5281/zenodo.18417250
title: АҲОЛИНИ РЎЙХАТГА ОЛИШНИНГ ЎЗИГА ХОС АҲАМИЯТИ

description: Аҳолини рўйхатга олиш Ўзбекистон Республикасининг ижтимоий-иқтисодий ривожланишида катта аҳамият касб этади. Аҳолини рўйхатга олиш маълумотларини таҳлил қилиш асосида олинган маълумотлардан соғлиқни сақлаш, таълим, уй-жой ва бандлик каби турли соҳаларда режалаштириш ва ривожланиш стратегияларини такомиллаштиришда фойдаланилади.
DOI: 10.7284/164644
title: INS (Inertial Navigation System) data collected during research cruise NBP2402 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/164645
title: INS (Inertial Navigation System) data collected during research cruise NBP2402 using a Kongsberg Seapath 380+ instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/164634
title: Meteorological Station data collected during research cruise NBP2402 using a USAP RVDAS Metstation instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/164633
title: Multibeam Echosounder data collected during research cruise NBP2402 using a Kongsberg EM122 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.15481775
title: Edge effects on evapotranspiration from tropical forest fragments

description: This repository contains data, code, and metadata necessary to reproduce the analyses and figures from Valdés-Uribe and Hoelscher (2026) “Edge effects on evapotranspiration from tropical forest fragments,” submitted to Ecological Informatics. It is organized as follows:





data/raw/: Original GIS inputs





Ecuador 2022 land-cover GeoTIFF (30 m)


Ecuador 2022 land-cover Polygon



Forest fragment vector layer (GeoPackage)




Reprojected ECOSTRESS latent-heat flux rasters (7 from 2019; 31 from 2020)




Elevation, tree cover, and aridity rasters






data/processed/: Tabular datasets





Daily_ET_and_Predictors.csv: ready for Random Forest modeling






data/metadata/: ISO 19115 XML metadata for each raw dataset




code/: R scripts (01–05) implementing





Data preparation 




FRAGSTATS-style landscape metrics




Changepoint detection 




Random Forest modeling and SHAP interpretation




Plot generation for all manuscript figures






model_outputs/: Intermediate and final model objects (.RData) and CSVs of predictions and SHAP values




QGIS_WORKFLOW.txt: Step-by-step guide for spatial processing in QGIS 3.28.3




LICENSE: CC-BY 4.0 open-access license



All scripts are fully annotated, use fixed seeds for reproducibility, and rely only on open-source software (R 4.2.2, QGIS 3.28.3). Metadata conform to ISO 19115 and describe coordinate reference systems, spatial extents, data provenance, and distribution URLs.
DOI: 10.5281/zenodo.15481776
title: Edge effects on evapotranspiration from tropical forest fragments

description: This repository contains data, code, and metadata necessary to reproduce the analyses and figures from Valdés-Uribe and Hoelscher (2026) “Edge effects on evapotranspiration from tropical forest fragments,” submitted to Ecological Informatics. It is organized as follows:





data/raw/: Original GIS inputs





Ecuador 2022 land-cover GeoTIFF (30 m)


Ecuador 2022 land-cover Polygon



Forest fragment vector layer (GeoPackage)




Reprojected ECOSTRESS latent-heat flux rasters (7 from 2019; 31 from 2020)




Elevation, tree cover, and aridity rasters






data/processed/: Tabular datasets





Daily_ET_and_Predictors.csv: ready for Random Forest modeling






data/metadata/: ISO 19115 XML metadata for each raw dataset




code/: R scripts (01–05) implementing





Data preparation 




FRAGSTATS-style landscape metrics




Changepoint detection 




Random Forest modeling and SHAP interpretation




Plot generation for all manuscript figures






model_outputs/: Intermediate and final model objects (.RData) and CSVs of predictions and SHAP values




QGIS_WORKFLOW.txt: Step-by-step guide for spatial processing in QGIS 3.28.3




LICENSE: CC-BY 4.0 open-access license



All scripts are fully annotated, use fixed seeds for reproducibility, and rely only on open-source software (R 4.2.2, QGIS 3.28.3). Metadata conform to ISO 19115 and describe coordinate reference systems, spatial extents, data provenance, and distribution URLs.
DOI: 10.7284/164639
title: Multibeam Echosounder data collected during research cruise NBP2402 using a Kongsberg EM122 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/164647
title: Multibeam Echosounder data collected during research cruise NBP2402 using a Kongsberg EM122 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/164640
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise NBP2402 using a LDEO pCO2 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/164636
title: Radiometer data collected during research cruise NBP2402 using a Biospherical GUV-2511 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/164643
title: Singlebeam Echosounder data collected during research cruise NBP2402 using a Knudsen 3260 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/164637
title: Water Temperature data collected during research cruise NBP2402 using a SeaBird SBE-38 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition