cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8101208.v1
title: Data from "Large carnivore damage in Europe: analysis of compensation and prevention programs"

description: This folder contains data from "Large carnivore damage in Europe: analysis of compensation and prevention programs" (Bautista et al. 2019, Biological Conservation, accepted article).<br>The raw data includes the economic costs of programs to compensate and prevent large carnivore damage in Europe and associated socio-economic correlates. The data have been compiled from the literature and official databases from the organizations responsible of compensation and prevention programs.<br>Along with the raw data we provide METADATA files with the information about each variable present in the data set. For details about the methods we refer to the original publication.
DOI: 10.6084/m9.figshare.8101208.v3
title: Data from "Large carnivore damage in Europe: analysis of compensation and prevention programs"

description: This folder contains data from "Large carnivore damage in Europe: analysis of compensation and prevention programs" (Bautista et al. 2019, Biological Conservation 235C (2019) pp. 308-316).<br>The raw data includes the economic costs of programs to compensate and prevent large carnivore damage in Europe and associated socio-economic correlates. The data have been compiled from the literature and official databases from the organizations responsible of compensation and prevention programs.<br>Along with the raw data we provide METADATA files with the information about each variable present in the data set. For details about the methods we refer to the original publication.
DOI: 10.6084/m9.figshare.8101208.v2
title: Data from "Large carnivore damage in Europe: analysis of compensation and prevention programs" Biological Conservation 235C (2019) pp. 308-316

description: This folder contains data from "Large carnivore damage in Europe: analysis of compensation and prevention programs" (Bautista et al. 2019, Biological Conservation 235C (2019) pp. 308-316).<br>The raw data includes the economic costs of programs to compensate and prevent large carnivore damage in Europe and associated socio-economic correlates. The data have been compiled from the literature and official databases from the organizations responsible of compensation and prevention programs.<br>Along with the raw data we provide METADATA files with the information about each variable present in the data set. For details about the methods we refer to the original publication.
DOI: 10.6084/m9.figshare.8100974
title: Important Plants for Honey Production in Four Agro Ecological Zones of Uganda

description: Important Plants for Honey Production in Four Agro Ecological Zones of Uganda
DOI: 10.6084/m9.figshare.8100899
title: Nutritional and bioactive characteristics of Ayocote bean (<i>Phaseolus coccienus</i> L.): An underutilized legume harvested in Mexico

description: Nutritional composition, content of phenolic compounds and antioxidant properties of the four Mexican varieties of Ayocote beans (<i>Phaseolus coccineus</i> L.) were studied. Ayocote beans were found to be a promising source of proteins, carbohydrates, fibre and minerals. Sucrose (55.6–62.2 g/kg) and stachyose (24–24.4 g/kg) were considered as the major sugar and oligosaccharide, respectively. Glutamic acid was the most abundant amino acid (32.2 to 35.8 g/kg), while cysteine was present at the lowest concentration (2.3–2.4 g/100 kg). Purple variety contains the highest amount of total phenolic compounds (2075.9 mg GAE/kg), total flavonoids (1612.9 mg QE/kg) and total anthocyanins (1193.2 mg CGE/kg). This variety also exhibited the most effective antioxidant activities, which were evaluated by DPPH (17,040 µmol TE/kg) and ORAC (51,620 µmol TE/kg). The results obtained reveal a high potential for wider use of Ayocote bean as a remarkable source of bioactive compounds and health-promoting food.
DOI: 10.6084/m9.figshare.8100974.v2
title: Important Plants for Honey Production in Four Agro Ecological Zones of Uganda

description: Important Plants for Honey Production in Four Agro Ecological Zones of Uganda
DOI: 10.6084/m9.figshare.8100899.v1
title: Nutritional and bioactive characteristics of Ayocote bean (<i>Phaseolus coccienus</i> L.): An underutilized legume harvested in Mexico

description: Nutritional composition, content of phenolic compounds and antioxidant properties of the four Mexican varieties of Ayocote beans (<i>Phaseolus coccineus</i> L.) were studied. Ayocote beans were found to be a promising source of proteins, carbohydrates, fibre and minerals. Sucrose (55.6–62.2 g/kg) and stachyose (24–24.4 g/kg) were considered as the major sugar and oligosaccharide, respectively. Glutamic acid was the most abundant amino acid (32.2 to 35.8 g/kg), while cysteine was present at the lowest concentration (2.3–2.4 g/100 kg). Purple variety contains the highest amount of total phenolic compounds (2075.9 mg GAE/kg), total flavonoids (1612.9 mg QE/kg) and total anthocyanins (1193.2 mg CGE/kg). This variety also exhibited the most effective antioxidant activities, which were evaluated by DPPH (17,040 µmol TE/kg) and ORAC (51,620 µmol TE/kg). The results obtained reveal a high potential for wider use of Ayocote bean as a remarkable source of bioactive compounds and health-promoting food.
DOI: 10.6084/m9.figshare.8100974.v1
title: Important Plants for Honey Production in Four Agroecological Zones of Uganda

description: Important Plants for Honey Production in Four Agroecological Zones of Uganda
DOI: 10.6084/m9.figshare.8100770
title: Mitteer et al. No Background vs Background Study

description: We have provided access to all of the Prism data files to allow for extraction of individual data points regarding the percentage of correct tacts. Due to privacy concerns, we are unable to provide the raw-data files.<br>The stimuli.zip file contains all images and videos prepared for this study.
DOI: 10.6084/m9.figshare.8100695
title: Tracking a Governance Transition: Identifying and Measuring Indicators of Social Forestry on the Willamette National Forest

description: National Forests in the United States have undergone a spatially and temporally uneven governance transition in response to social and economic pressures and contemporary policy changes, with many national forest units moving from a wholly government-led “dominant federal” model to a more collaborative “social forestry” model in which nonfederal actors have greater influence and authority. Here we report on an effort to develop a suite of indicators designed to capture some of the most tangible elements of a transition from dominant federal to social forestry modes of governance. We pilot test these data on the Willamette National Forest using data from a variety of sources internal and external to the USDA Forest Service. We assess the suitability of these indicators for tracking governance transitions and discuss their applicability to other national forest units nationwide.
DOI: 10.6084/m9.figshare.8100770.v1
title: Mitteer et al. No Background vs Background Study

description: We have provided access to all of the Prism data files to allow for extraction of individual data points regarding the percentage of correct tacts. Due to privacy concerns, we are unable to provide the raw-data files.<br>The stimuli.zip file contains all images and videos prepared for this study.
DOI: 10.6084/m9.figshare.8100668
title: Genome-wide association study for erythrocyte traits and platelet in Chinese Holstein cattle

description: twenty three significant SNPs associated with erythrocyte traits: six for RBC, two for MCH, seven for MCHC, two for MCV, four for HCT and two for HGB Twenty-seven significant SNPs were detected to be associated with five platelet traits: none for PLT, five for PDW, eleven for MPV, five for LPCR, five for PDWR. <b>NOTE:SNP: the SNP name on a high-density chip</b><b>Chr.: cow chromosome number</b><b>Location (bp): the specific physical location of an SNP on bovine chromosomes</b><b>Distance (bp): the physical distance between an SNP and the nearest upstream and downstream gene</b> <b>p-value: FarmCPU-calculated p value of the SNP</b><b>Figure legends</b><b>Figure 1. Manhattan plots of -log<sub>10</sub> (p-values) for sixelectrolyte traits</b><b>.</b><b>Figure 3. Manhattan plots of -log<sub>10</sub> (p-values) five platelets.</b>In GWAS Manhattan plots, genomic coordinates are displayed along the X-axis, with the negative logarithm of the association p-value for each single nucleotide polymorphism (SNP) displayed on the Y-axis; each dot on the Manhattan plot signifies an SNP.<b> </b><b> </b><b>Figure 2. QQ plots of -log<sub>10</sub> (p-values) for six electrolyte traits</b><b>Figure 4. QQ plots of -log<sub>10</sub> (p-values) for five platletes.</b> In the QQ diagram of GWAS, the expected p-value is the value of each point when the null hypothesis is true. The expected p-value and the observed p-value are arranged from small to large, with the X-axis as the expected p-value and the Y-axis as the observed p-value. If there is no systematic error in the correlation analysis results, most points should be attached to the straight line of y = x, and a small part of the tail with significant correlation points deviates from the straight line upwards. If there are a large number of false positive sites, most points will deviate from the straight line to the top. If there are a large number of false negative loci, most points will deviate from the line downwards.
DOI: 10.6084/m9.figshare.8100695.v1
title: Tracking a Governance Transition: Identifying and Measuring Indicators of Social Forestry on the Willamette National Forest

description: National Forests in the United States have undergone a spatially and temporally uneven governance transition in response to social and economic pressures and contemporary policy changes, with many national forest units moving from a wholly government-led “dominant federal” model to a more collaborative “social forestry” model in which nonfederal actors have greater influence and authority. Here we report on an effort to develop a suite of indicators designed to capture some of the most tangible elements of a transition from dominant federal to social forestry modes of governance. We pilot test these data on the Willamette National Forest using data from a variety of sources internal and external to the USDA Forest Service. We assess the suitability of these indicators for tracking governance transitions and discuss their applicability to other national forest units nationwide.
DOI: 10.6084/m9.figshare.8100629
title: phago.csv

description: These data accompany Yarbro & Pence, Mechanisms of Ageing and Development (2019). https://doi.org/10.1016/j.mad.2019.111146
DOI: 10.6084/m9.figshare.8100617
title: counts.csv

description: These data accompany Yarbro & Pence, Mechanisms of Ageing and Development (2019). https://doi.org/10.1016/j.mad.2019.111146
DOI: 10.6084/m9.figshare.8100626
title: qpcr_met_flex.csv

description: These data accompany Yarbro & Pence, Mechanisms of Ageing and Development (2019). https://doi.org/10.1016/j.mad.2019.111146
DOI: 10.6084/m9.figshare.8100629.v1
title: phago.csv

description: These data accompany Yarbro & Pence, Mechanisms of Ageing and Development (2019). https://doi.org/10.1016/j.mad.2019.111146
DOI: 10.6084/m9.figshare.8100626.v1
title: qpcr_met_flex.csv

description: These data accompany Yarbro & Pence, Mechanisms of Ageing and Development (2019). https://doi.org/10.1016/j.mad.2019.111146
DOI: 10.6084/m9.figshare.8100668.v1
title: Genome-wide association study for erythrocyte traits and platelet in Chinese Holstein cattle

description: twenty three significant SNPs associated with erythrocyte traits: six for RBC, two for MCH, seven for MCHC, two for MCV, four for HCT and two for HGB Twenty-seven significant SNPs were detected to be associated with five platelet traits: none for PLT, five for PDW, eleven for MPV, five for LPCR, five for PDWR. <b>NOTE:SNP: the SNP name on a high-density chip</b><b>Chr.: cow chromosome number</b><b>Location (bp): the specific physical location of an SNP on bovine chromosomes</b><b>Distance (bp): the physical distance between an SNP and the nearest upstream and downstream gene</b> <b>p-value: FarmCPU-calculated p value of the SNP</b><b>Figure legends</b><b>Figure 1. Manhattan plots of -log<sub>10</sub> (p-values) for sixelectrolyte traits</b><b>.</b><b>Figure 3. Manhattan plots of -log<sub>10</sub> (p-values) five platelets.</b>In GWAS Manhattan plots, genomic coordinates are displayed along the X-axis, with the negative logarithm of the association p-value for each single nucleotide polymorphism (SNP) displayed on the Y-axis; each dot on the Manhattan plot signifies an SNP.<b> </b><b> </b><b>Figure 2. QQ plots of -log<sub>10</sub> (p-values) for six electrolyte traits</b><b>Figure 4. QQ plots of -log<sub>10</sub> (p-values) for five platletes.</b> In the QQ diagram of GWAS, the expected p-value is the value of each point when the null hypothesis is true. The expected p-value and the observed p-value are arranged from small to large, with the X-axis as the expected p-value and the Y-axis as the observed p-value. If there is no systematic error in the correlation analysis results, most points should be attached to the straight line of y = x, and a small part of the tail with significant correlation points deviates from the straight line upwards. If there are a large number of false positive sites, most points will deviate from the straight line to the top. If there are a large number of false negative loci, most points will deviate from the line downwards.
DOI: 10.6084/m9.figshare.8100608
title: demographics.csv

description: These data accompany Yarbro & Pence, Mechanisms of Ageing and Development (2019). https://doi.org/10.1016/j.mad.2019.111146
DOI: 10.6084/m9.figshare.8100611
title: met_flex_metab.csv

description: These data accompany Yarbro & Pence, Mechanisms of Ageing and Development (2019). https://doi.org/10.1016/j.mad.2019.111146
DOI: 10.6084/m9.figshare.8100611.v1
title: met_flex_metab.csv

description: These data accompany Yarbro & Pence, Mechanisms of Ageing and Development (2019). https://doi.org/10.1016/j.mad.2019.111146
DOI: 10.6084/m9.figshare.8100617.v1
title: counts.csv

description: These data accompany Yarbro & Pence, Mechanisms of Ageing and Development (2019). https://doi.org/10.1016/j.mad.2019.111146
DOI: 10.6084/m9.figshare.8100545
title: Indole-derived water-soluble N, O bi-dentate ligand-based mononuclear transition metal complexes: <i>in silico</i> and <i>in vitro</i> biological screening, molecular docking and macromolecule interaction studies

description: A novel tryptophan-derived Schiff base ligand (potassium (E)-2-((4-chloro-3-nitrobenzylidene)amino)-3-(1H-indol-3-yl)propanoate) and a series of its transition metal complexes of the types [ML<sub>2</sub>] and [ML(1,10-phen)<sub>2</sub>]Cl where M = Cu(II), Co(II), Ni(II) and Zn(II) were prepared. They were analyzed by various spectral and physicochemical studies. The XRD data were also used to determine the average lattice parameters and crystalline size of the compounds. All the synthesized compounds were tested against a series of five bacterial and fungal strains. The obtained results showed that the biological activity of free ligand was increased on complexation. PASS online software predicts the various biological activities of ligand such as enzyme inhibitor, antiviral, analgesic and antituberculosis. The <i>in silico</i> theoretical prediction of synthesized compounds is also deliberated by Swiss ADME predictor which gives the properties of molecular hydrophobicity (log P), topological polar surface area (TPSA) and oral bioavailability score. The binding energy of the docked molecule with macromolecules 1BNA and 3EQM is also determined by using Hex 8.0 software. The ligand has the least binding energy score which signifies that the potential of binding is greater in the receptor. Moreover, the interactions of complexes with DNA have been explored by electronic absorption titration, fluorescence emission titration, viscosity measurements and gel electrophoresis. HighlightsSynthesis and characterization of novel indole-derived compounds.X-ray diffraction studies demonstrate average crystalline size of the compounds.Metal complexes act as good metallointercalators.Metal complexes show higher antimicrobial activity compared to ligand.Prediction of biological activities of the ligand by PASS online software.Drug-like nature and bioavailability of synthesized compounds predicted by Swiss ADME predictorDocking of the synthesized compounds with 1BNA and 3EQM using HEX 8.0 software. Synthesis and characterization of novel indole-derived compounds. X-ray diffraction studies demonstrate average crystalline size of the compounds. Metal complexes act as good metallointercalators. Metal complexes show higher antimicrobial activity compared to ligand. Prediction of biological activities of the ligand by PASS online software. Drug-like nature and bioavailability of synthesized compounds predicted by Swiss ADME predictor Docking of the synthesized compounds with 1BNA and 3EQM using HEX 8.0 software. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.8100545.v1
title: Indole-derived water-soluble N, O bi-dentate ligand-based mononuclear transition metal complexes: <i>in silico</i> and <i>in vitro</i> biological screening, molecular docking and macromolecule interaction studies

description: A novel tryptophan-derived Schiff base ligand (potassium (E)-2-((4-chloro-3-nitrobenzylidene)amino)-3-(1H-indol-3-yl)propanoate) and a series of its transition metal complexes of the types [ML<sub>2</sub>] and [ML(1,10-phen)<sub>2</sub>]Cl where M = Cu(II), Co(II), Ni(II) and Zn(II) were prepared. They were analyzed by various spectral and physicochemical studies. The XRD data were also used to determine the average lattice parameters and crystalline size of the compounds. All the synthesized compounds were tested against a series of five bacterial and fungal strains. The obtained results showed that the biological activity of free ligand was increased on complexation. PASS online software predicts the various biological activities of ligand such as enzyme inhibitor, antiviral, analgesic and antituberculosis. The <i>in silico</i> theoretical prediction of synthesized compounds is also deliberated by Swiss ADME predictor which gives the properties of molecular hydrophobicity (log P), topological polar surface area (TPSA) and oral bioavailability score. The binding energy of the docked molecule with macromolecules 1BNA and 3EQM is also determined by using Hex 8.0 software. The ligand has the least binding energy score which signifies that the potential of binding is greater in the receptor. Moreover, the interactions of complexes with DNA have been explored by electronic absorption titration, fluorescence emission titration, viscosity measurements and gel electrophoresis. HighlightsSynthesis and characterization of novel indole-derived compounds.X-ray diffraction studies demonstrate average crystalline size of the compounds.Metal complexes act as good metallointercalators.Metal complexes show higher antimicrobial activity compared to ligand.Prediction of biological activities of the ligand by PASS online software.Drug-like nature and bioavailability of synthesized compounds predicted by Swiss ADME predictorDocking of the synthesized compounds with 1BNA and 3EQM using HEX 8.0 software. Synthesis and characterization of novel indole-derived compounds. X-ray diffraction studies demonstrate average crystalline size of the compounds. Metal complexes act as good metallointercalators. Metal complexes show higher antimicrobial activity compared to ligand. Prediction of biological activities of the ligand by PASS online software. Drug-like nature and bioavailability of synthesized compounds predicted by Swiss ADME predictor Docking of the synthesized compounds with 1BNA and 3EQM using HEX 8.0 software. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.12871682
title: Evaluation Results

description: Evaluation results of 9 datasets
DOI: 10.6084/m9.figshare.12871682.v1
title: Evaluation Results

description: Evaluation results of 9 datasets
DOI: 10.6084/m9.figshare.8100170
title: GWAS_MetS.xlsx

description: This data is for Genome-Wide Association Study of Metabolic Syndrome in Korean populations<br>
DOI: 10.6084/m9.figshare.8100128
title: Epigenome modulated xenobiotic detoxification pathways control DMBA-induced breast cancer in agouti A<sup>vy</sup>/a mice

description: Environmental xenobiotics with genotoxic activity are carcinogenic. However, individual differences in the susceptibility to xenobiotic-induced breast cancer remain unclear. Since epigenetic modifications could control the expression of metabolic enzymes, our goal was to determine whether epigenome modulated metabolic networks determine susceptibility to xenobiotic-induced breast cancer. The effect of epigenetic background on predisposition to carcinogen 7,12-dimethylbenz(a)anthracene (DMBA)-induced breast cancer development and progression was assessed using the A<sup>vy</sup>/a mouse model. In a randomized block design, 22 isogenic A<sup>vy</sup>/a (8 yellow, 7 slightly mottled, 7 pseudoagouti) and 8 wild type non-agouti (a/a black) age matched female mice were subjected to DMBA (30 mg/kg per mouse weight) once a week for 6 weeks to induce breast cancer. Compared to pseudoagouti littermates, a significant decrease in tumour latency with increased tumour burden was observed in slightly mottled and yellow littermates (<i>p</i> ≤ 0.05). However, tumour latency and tumour burden were similar in non-agouti a/a mice and A<sup>vy</sup>/a cohorts. Network analysis of differentially expressed liver genes identified altered metabolic gene networks among agouti phenotypes. Consequently, in HPLC analyses, DMBA metabolites were significantly increased in A<sup>vy</sup>/a pseudoagouti mice (<i>p</i> ≤ 0.05). Relative to A<sup>vy</sup>/a slightly mottled, A<sup>vy</sup>/a yellow and non-agouti a/a black mice, DMBA metabolites increased nine-, eight-, and four-fold, respectively, in A<sup>vy</sup>/a pseudoagouti mice. In agreement with this, seven phase 2 xenobiotic detoxification genes were significantly upregulated in A<sup>vy</sup>/a pseudoagouti mice (<i>p</i> ≤ 0.05). The Results from this study suggest that epigenome modulation of xenobiotic detoxification pathways may control xenobiotic-induced breast cancer susceptibility in A<sup>vy</sup>/a mice.
DOI: 10.6084/m9.figshare.8100149
title: Legge-Smith-et-al-2019-MammalsXFireXStock.xlsx

description: Variation in small mammal abundance and species richness with changes in fire regime and grazing management, from the tropical savannas od northern Australia.
DOI: 10.6084/m9.figshare.8100122
title: Monoterpene_India

description: Basic data used in different Figures.<br>