cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0157443.10fu
title: SH0157443.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0157444.10fu
title: SH0157444.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0157445.10fu
title: SH0157445.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0157446.10fu
title: SH0157446.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0157447.10fu
title: SH0157447.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0157448.10fu
title: SH0157448.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0157449.10fu
title: SH0157449.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0157450.10fu
title: SH0157450.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0157451.10fu
title: SH0157451.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.fn63f4
title: Occurrence Download

description: A dataset containing 466335 records in GBIF matching the query:

 SELECT gbifid, datasetkey, specieskey, scientificname, decimallatitude, decimallongitude, eventdate, "year" AS obs_year, basisofrecord, coordinateuncertaintyinmeters, issue
 FROM occurrence
 WHERE
 decimallatitude IS NOT NULL
 AND decimallongitude IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND coordinateuncertaintyinmeters IS NOT NULL
 AND coordinateuncertaintyinmeters &gt; 0
 AND coordinateuncertaintyinmeters &lt;= 200.0
 AND decimallatitude &gt;= -46.479780028101516
 AND decimallatitude &lt;= -41.89415215079384
 AND decimallongitude &gt;= 161.8400183137883
 AND decimallongitude &lt;= 176.24314657029385
 AND GBIF_Within('POLYGON ((176.243147 -46.479780, 176.243147 -41.894152, 161.840018 -41.894152, 161.840018 -46.479780, 176.243147 -46.479780))', decimallatitude, decimallongitude) = TRUE
 

 The dataset's 466335 records were derived from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014972-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18499416
title: The state data assimilation results for CONUS NEON sites from 2012 to 2021.
DOI: 10.5281/zenodo.18499417
title: The state data assimilation results for CONUS NEON sites from 2012 to 2021.
DOI: 10.15468/dl.rukjvm
title: Occurrence Download

description: A dataset containing 77211 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Euphorbia cyparissias)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 77211 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014961-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28509341
title: U.S. Federal Civil Agencies & Departments (2018-2025)

description: Data and Dofile for the U.S. Federal Civil Agencies & Departments (2018-2025)
DOI: 10.6084/m9.figshare.28509341.v10
title: U.S. Federal Civil Agencies & Departments (2018-2025)

description: Data and Dofile for the U.S. Federal Civil Agencies & Departments (2018-2025)
DOI: 10.6084/m9.figshare.28509341.v9
title: U.S. Federal Civil Agencies & Departments (2018-2025)

description: Data and Dofile for the U.S. Federal Civil Agencies & Departments (2018-2025)
DOI: 10.15468/dl.da8z8c
title: Occurrence Download

description: A dataset containing 5694 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Euphorbia exigua)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 5694 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014977-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4qbywx
title: Occurrence Download

description: A dataset containing 7363 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-48.03565 -21.06504,-48.08407 -21.07908,-48.09473 -21.13331,-48.10344 -21.18803,-48.07778 -21.21853,-47.93058 -21.19481,-47.89668 -21.19965,-47.89184 -21.12508,-47.89184 -21.08876,-47.91508 -21.0539,-47.94752 -21.0539,-48.03565 -21.06504))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 7363 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014978-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18497815
title: Integrating multi-omic QTLs and predictive models reveals regulatory architectures at immune related GWAS loci in CD4+ T cells.

description: This repository contains data files for various analyses supporting the preprint "Integrating multi-omic QTLs and predictive models reveals regulatory architectures at immune related GWAS loci in CD4+ T cells."
DOI: 10.5281/zenodo.18497814
title: Integrating multi-omic QTLs and predictive models reveals regulatory architectures at immune related GWAS loci in CD4+ T cells.

description: This repository contains data files for various analyses supporting the preprint "Integrating multi-omic QTLs and predictive models reveals regulatory architectures at immune related GWAS loci in CD4+ T cells."
DOI: 10.34945/f5kp48
title: Human GFAP degradome in cerebrospinal fluid after moderate/severe traumatic brain injury for proteolysis dynamic, product fates and outcome prognosis

description: STUDY PURPOSE: The objective of this study was to investigate the temporal profiles of biomarker glial fibrillary acidic protein (GFAP) and its trauma-induced proteolytic breakdown products (GFAP-BDPs) in cerebrospinal fluid (CSF) to assess longitudinal proteolysis, fragment fates and long-term outcome prognosis in moderate/severe traumatic brain injury (TBI) patients. The biofluid frequency of different fragments of this biomarker informs on the pathophysiological processes including disturbed proteostasis, proteolysis, astrocyte death and proteinopathy following TBI. DATA COLLECTED: TBI-associated GFAP-BDPs were sequenced and quantified using label-free Mass spectrometry that is reported in CCMS MassIVE repository (https://identifiers.org/massive:MSV000099415).The data was then independently corroborated using unbiased, band-specific scaled immunoblot densitometry in an observational cohort of 23 moderate to severe TBI patients (see Supplemental and Methodology Files for SOPs and Infographic). Calibration was done using known protein dilutions of recombinant full-length as well as His-tagged coil1 fragment GFAP protein with calibration curves given in Supplemental infographic file. GFAP-BDPs were measured in 108 serial CSF samples over two postinjury weeks followed by assessment for long-term outcome prognosis. Densitometry was performed on eight exposures from each blot (2s-20min) after background correction. Subsaturated band measurements were standardized to 1min, see Supplemental infographic file, dynamic range, detection limits and inter-experimental coefficient of variation. Adult TBI patients were admitted to neurocritical care at level one trauma centers at UCLA and at the University of Florida, Gainesville, and a commercial control serum sample was obtained from Precision Med. Patient median age was 40±19 years, 22 subjects were male and 4 were female, and median score on the Glasgow Coma Scale (GCS) was 6 ±3.4. Enrollment occurred between 2018-2023 at UCLA and between 2007-2010 at University of Florida. Deidentified baseline demographic and clinical parameters were included. All except one patient had recovery scores on the Glasgow Outcome Scale (GOS) reported at hospital discharge and all except two patients had recovery scores determined by phone interview at six-month postinjury on extended GOS (GOSE). Outcome was binarized as good (GOSE 5-8), and poor (GOSE 1-4) outcomes. Alternative partitioning of favorable outcome (GOSE7+8) versus unfavorable outcome (GOSE =6) corroborated findings for enhanced rigor, as defining good recovery is inherently personal (Wilson et al, 2021; Ann Surg 273: 500-506; Doi 10.1097/SLA.0000000000003389). DATA USAGE NOTES:
DOI: 10.15468/dl.2k36ms
title: Occurrence Download

description: A dataset containing 107332 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Miconia calvescens, Miconia cionotricha, Miconia nervosa, Miconia racemosa)"
 ]
}

 The dataset includes 107332 records from 323 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014935-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hfa4gq
title: Occurrence Download

description: A dataset containing 15164 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Euphorbia helioscopia, Euphorbia helioscopia, Euphorbia helioscopia)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 15164 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014982-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18499213
title: Ancillary datasets for the CONUS NEON SDA Experiments

description: This data record provides the ancillary datasets for the CONUS NEON SDA Experiments. Please check the read me file for more information.
DOI: 10.15468/dl.hnu8vh
title: Occurrence Download

description: A dataset containing 199377 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sus scrofa",
 "HasCoordinate is true",
 "Country is France"
 ]
}

 The dataset includes 199377 records from 2621 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064960-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/yys-2vr-15r
title: Pinaceae Spreng. ex. Rudolphi

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/0gp-4rt-ndc
title: Arum triphyllum L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/dmd-8zd-a6n
title: Ostrya virginiana subsp. virginiana

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/48x-8dy-ja7
title: Phyllanthus acuminatus Vahl

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/e2n-d07-1xf
title: Philodendron pinnatifidum (Jacq.) Schott

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/l0g-zna-7nm
title: Tetraclinis articulata (Vahl) Mast.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/gle-3h9-stj
title: Platanus occidentalis L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/6lj-lds-b6r
title: Phyllanthus debilis J.G.Klein ex Willd.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/pyg-lhg-jx6
title: Croton discolor Willd.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/cln-671-lke
title: Cupressus L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/xya-nqa-yz6
title: Poterium sanguisorba L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/1db-8re-9dp
title: Theligonum cynocrambe L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/afz-zsd-lmb
title: Phyllanthus debilis J.G.Klein ex Willd.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/cwa-fbv-j1b
title: Cucurbita pepo L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/8tq-znv-xgk
title: Abies balsamea (L.) Mill.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/r6y-v26-3cy
title: Pinaceae Spreng. ex. Rudolphi

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/4jf-2e0-2ww
title: Garcia nutans Vahl ex Rohr

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/60w-x2g-4l7
title: Aleurites J.R.Forst. & G.Forst.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/43r-mnv-wm1
title: Araceae

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/ffk-43p-ke4
title: Ostrya virginiana subsp. virginiana

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/fjk-10y-wht
title: Pinus banksiana Lamb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.