cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7603460.v1
title: Data for RECONCILING ECOGEOGRAPHICAL RULES: RAINFALL AND TEMPERATURE PREDICT GLOBAL COLOUR VARIATION IN THE LARGEST BIRD RADIATION

description: File species.level.data.csv contains climatic/environmental variables (annual mean temperature, annual precipitation, percent tree cover, mean temperature of warmest quarter, precipitation of warmest quarter) obtained based on each passerine species breeding range and male and female plumage lightness. Species name (TipLabel) matches nomenclature at www.birdtree.org. Also provided are mid latitude for each species' range and taxonomic family.<br>File assemblage.level.data contains for each ~100x100km cell assemblage: average annual mean temperature, average annual precipitation, average percent tree cover, and average male and female passerine plumage lightness. Also included are each cells' mid latitude and longitude, its zoogeographic realm (terrestrial_realm) and number of species of passerines found in it (species_richness)
DOI: 10.6084/m9.figshare.805208.v2
title: Astroquery v0.1

description: A suite of tools for querying online astronomical data services.
DOI: 10.17632/6x338sw55n
title: Data for: Influence of laser polishing on surface roughness and micro-structural properties of the remelted surface boundary layer of tool steel H11

description: This is a zip-file which consists of raw and processed data subdivided in several folders. The substructure is almost self-explanatory. The folders contain data from cross-sections, Electron Backscatter Diffraction, Glow Discharge spectroscopy, hardness measurement (surface hardness and nanoindentation), Light microscopy images, roughness measurements by Hommelmeter and white light interferometry, Scanning electron images and X-Ray Diffraction
DOI: 10.17632/k6t8rkh4pd
title: High-precision vertical movement  of the Tibetan Plateau

description: The file contains vertical leveling rates of the Tibetan Plateau and its adjacent region (Vertical_rate.txt) build by Wu et al. (2022),  from leveling survey in Tibetan Plateau and its adjacent region. 
Cite the following article:
Wu, Y., Zheng, Z., Nie, J., Chang, L., Su, G., Yin, H., et al. (2022). High-precision vertical movement and three-dimensional deformation pattern of the Tibetan Plateau. Journal of Geophysical Research: Solid Earth, 127, e2021JB023202. https://doi.org/10.1029/2021JB023202
DOI: 10.6084/m9.figshare.28910120.v1
title: <b>Evidence for </b><b>Imbalanced </b><b>P</b><b>olarization of Caruncle </b><b>M</b><b>acrophages</b><b> </b><b>in </b><b>Retained Placenta </b><b>of </b><b>Dairy Cows</b>

description: Macrophages at the maternal-fetal interface exhibit remarkable plasticity and polarization, playing a crucial role in placental expulsion by regulating the clearance of apoptotic cells and extracellular matrix remodeling. In the present study, we observed increased collagen deposition and reduced apoptosis at the maternal-fetal interface in the placental tissue collectedfrom retained placenta (RP) cows within 30 minutes postpartum. Additionally, we found a reduced population of caruncle macrophages in RP cows, with a predominance of M2-polarized macrophages. These findings suggest that the imbalance of M1/M2 macrophage ratio may contribute to abnormal collagen deposition and impaired cell death at the interface, leading to the occurrence of RP.
DOI: 10.17632/6whw7rx6b6
title: Membrane Segmentation using Unet with Grad-CAM based Heatmap

description: This dataset visualizes Grad-CAM based heatmap applied on membrane segmentation results when using Unet. The training data are shown in "train" folder in which: - "checkpoint" folder: stores checkpoint files for 3 epochs: 100, 500, and 5,000. - "image" folder: holds training images - "label" folder: stores labelled membrane images The testing results are stored in "test_xxx" folders for 3 epochs: 100, 500 and 5,000.
DOI: 10.17632/n5z55s6bw6
title: Integrating 3D Printed Grinding Tools and Closed-Loop Temperature Management for Optimal Surgical Outcomes

description: The dataset of the paper "Integrating 3D Printed Grinding Tools and Closed-Loop Temperature Management for Optimal Surgical Outcomes".
DOI: 10.6084/m9.figshare.20563995.v1
title: Using the SOCIO Chatbot for UML Modelling: A Second Family of Experiments

description: <strong>CONTENTS OF THIS FILE</strong> <br> * Data Analysis * Experimental Design <br> <strong>Data Analysis</strong> <br> This folder consists of data obtained from the experiments and the materials we use for analysis. Here we provide the following documents: <br> 01-The folder "Class diagrams" This folder contains class diagrams realized by participants in three experiments. <br> 02-Code.R Here we provide the code we use to analyze the raw data of three experiments. With this code, we generate profile-plots, violin-plots, the summaries of descriptive statistics. <br> 03-Power calculation (appendix A).R Here we provide the code needed for a-priori power analysis. <br> 04-Appendix A-Power Analysis.pdf Here we provide the power analysis. <br> 05-Familiarity Result.xlsx Here we provide the data we obtained from the familiarity questionnaire. <br> 06-Raw Data.xlsx Here we provide the aggregation of the raw data of the three experiments. <br> 07-Task 1_Ideal Class diagram.png and 08-Task 2_Ideal Class diagram.png Here we provide two ideal class diagrams corresponding to task 1 and task 2. To analyze the response variable effectiveness and the quality of class diagrams, we compare these two ideal class diagrams with each of the class diagrams realized by participants. <br> 09-How to calculate the quality.pdf Here we provide two examples of SOCIO and Creately to illustrate how we compare the ideal class diagram and the class diagram obtained in the experiment. <br> 10-The folder "Thematic Analysis" This folder contains the code and data that we use to generate the thematic results graphs. <br> <strong>Experimental Design</strong> <br> This folder contains the original materials used in the experimental design process. Here we provide the following documents: <br> 01-Experiment Procedure.pdf Here we provide the experiment procedure in detail. The experiment procedure is identical among the three experiments. <br> 02-Informed Consent.pdf Here we provide the informed consent in detail. We require participants to sign the informed consent before the experiment, stating that they granted us permission to record their data via Telegram. We ensured that the participation of all subjects in this research was completely anonymous, and no information they shared could be electronically traced to them <br> 03-The folder "Questionnaires" This folder contains the familiarity questionnaire we used before the execution of each experiment (i.e., Familiarity Questionnaire.pdf), the SUS questionnaire for Task 1 (i.e., SUS Questionnaire_Task1.pdf) and the SUS questionnaire for Task 2 (i.e., SUS Questionnaire_Task2.pdf). <br> 04-The folder “Tasks” This folder contains the specific content of Task 1 (i.e., Task1.pdf) and Task 2 (i.e., Task2.pdf). <br> 05-The folder “Tutorial Slides” This folder contains the slides we use to give the tutorials of the chatbot SOCIO (i.e., Tutorial_SOCIO V1.pdf) and the web-based online tool Creately (i.e., Tutorial_Creately.pdf).
DOI: 10.6084/m9.figshare.25407505.v1
title: <b>Data & Code of - "Coinfection frequency in water flea populations is a mere reflection of parasite diversity."</b>

description: The data files contain all the data that was used in the diffrent analyses and figures (but do not contain data that was discrded following the criterions that were detailed in the paper). The Python script is acompanied with six data files which are all read in the beginning of the script. each file contain a different data set or subset (only_endo.xlsx & endoparasites_status.xlsx are splited sets of endoparasites_status_full.xlsx for convinience reasons). It is recomended to read the help file and the instructions that were embeded in the code for easier use. The R script acompanied with two data files, one for each of the anlyses performend on this software. Again, it is recomended to read the help file for better understanding of the data.List of data files for the Python script: abiotics.xlsx, densities.xlsx, disection.xlsx, endoparasites_status.xlsx, endoparasites_status_full.xlsx & only_endo.xlsx.List of data files for the R script: data_for_the_model_selection.xlsx & densities_dataIt is recomended to have both script and its related file in the same folder.
DOI: 10.17632/gk3f363sfg
title: Process monitoring and weather datasets on farm-scale biogas digesters

description: Research Hypothesis:
This dataset supports the hypothesis that variations in process parameters and weather conditions significantly influence the efficiency and performance of farm-scale anaerobic biodigesters. It aims to establish correlations between external environmental factors and biodigester methane yield, stability, and overall functionality. The overall goal is to optimize livestock manure fed farm-scale digesters for maximum biogas and organic fertilizer production.

Data Overview:
The dataset consists of two key components:

Process Data – Includes parameters such as temperature, pH, hydraulic retention time (HRT), biogas production rate, methane content, and volatile solids reduction.
Weather Data – Covers ambient temperature, humidity, solar radiation, rainfall, and wind speed, as well as digester temperature collected at biodigester sites.
Data Collection Methodology:
Process monitoring data was gathered through on-site sensors, manual sampling, and lab analysis at regular intervals.
Weather data was obtained from on-farm weather sensors.
Notable Findings:
Significant seasonal variations were observed in biogas production, with lower yields during colder months.
Higher ambient temperatures correlated with increased methane content and overall efficiency.
Rainfall and excessive moisture impacted feedstock consistency and digestate quality.
Variability in organic loading rates (OLR) and temperature affected system stability, with optimum operating conditions were identified.
Interpretation and Use:
Researchers can analyze correlations between process efficiency and environmental factors.
Policymakers can use the findings to design climate-smart livestock production and biodigester policies.
Farmers and technicians can optimize operational parameters based on local weather conditions, energy needs and digester's operating parameters.
This dataset provides critical insights into how farm-scale anaerobic digestion systems respond to environmental conditions and operating conditions, supporting circular economy efforts to enhance biogas production efficiency, sustainably manage livestock waste, recycle nutrients and reduce greenhouse gas emissions.
DOI: 10.6084/m9.figshare.14560596.v2
title: Data from: The use of cavity-nesting wild birds as agents of biological control in vineyards of Central Chile

description: Original data from: Olmos-Moya, N., P. Díaz-Seifer, R.A. Pozo, F.E. Fontúrbel, B. Lavandero, S. Abades & J.L. Celis-Dies (2022) The use of cavity-nesting wild birds as agents of biological control in vineyards of Central Chile. Agriculture, Ecosystems and Environment 334: 107975. https://doi.org/10.1016/j.agee.2022.107975 <br> This repository contains thee files: (1) nestbox.txt - original data on nest-box experiment (2) nestbox-div.txt - bird diversity data (3) bird_divers.csv - bird species recorded
DOI: 10.17632/2tgbfg825g
title: Dataset on the Long-Lived Photoexcitation in TiO2-Ag Nano-heterojunctions probed by Photo-induced enhanced Raman Spectroscopy

description: The dataset contains experimental files related to Raman, SEM, UV-Vis, photoluminescence, and current-voltage (I-V) measurements of Ag-TiO2 substrates, based on a 20-nanometer layer of semiconductor and silver nanoparticles, used in Surface-Enhanced and Photo-Induced Raman spectroscopy (SERS and PIERS, respectively). The study investigates the relationship between the characteristics of Ag-TiO2 junction in substrates based on a 20 nm TiO2 layer with deposited silver nanoparticles and the migration and charge accumulation between its elements caused by UV light. The study examined how the aforementioned parameters affect the enhancement and lifetime of the PIERS effect.
DOI: 10.17632/b2mvj3kjfx
title: Nature's Best vs. Bruised: A Veggie Evaluation

description: The research has pioneered the creation of a unique database named " Nature's Best vs. Bruised: A Veggie Evaluation," featuring 4464 images representing six commonly consumed vegetables in India: Cowpea (Scientific name: Vigna sinensis Savi), Snake Gourd (Scientific name: Trichosanthes cucumerina), Spiny Gourd (Scientific name: Momordica dioica), Ivy Gourd (Scientific name: Coccinia grandis), Taro root (Scientific name: Colocasia esculenta) and Turmeric (Scientific name: Curcuma longa). These specific vegetables were chosen due to their widespread consumption and affordability, particularly in rural areas, and notably, they were absent from existing databases.
The images within our database authentically capture the natural progression of these vegetables, showcasing their transition from Fresh state to Damaged to Severely Damaged conditions, without any external manipulation. We classified these images into three distinct categories: Fresh, Damaged, and Severely Damaged. To ensure diversity, the photographs were captured utilizing varied camera angles, non-uniform illumination conditions and consistent white background.
This comprehensive database stands as a valuable resource for researchers in the field, addressing the crucial need for robust datasets and facilitating advancements in automated vegetable quality assessment techniques.
DOI: 10.17632/dfztdtfsxz
title: Multi-Class Viral Skin Lesion Dataset (MCVSLD)

description: This dataset comprises a collection of images depicting various viral skin conditions, including Hand, Foot, and Mouth Disease (HFMD), Monkeypox, Measles, Chickenpox, Cowpox, and images of healthy skin. It is intended for research and development in areas such as computer-aided diagnosis, medical image analysis, and the training of machine learning models for disease recognition.

Dataset Distribution:
HFMD: 1932 images
Monkeypox: 3408 images
Measles: 660 images
Healthy: 1368 images
Chickenpox: 900 images
Cowpox: 792 images
DOI: 10.17632/hnj2y2g4rs
title: Supplemental Materials: 5-fluorouracil 5% cream for squamous cell carcinoma in situ: Factors impacting treatment response

description: Supplementary Figure 1, Figure 2, and Table 1
DOI: 10.6084/m9.figshare.22691329.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.26298955.v2
title: Vertebrate taxonomic and functional hotspots in the Brazilian Atlantic Forest - FILES

description: The dataset has all the shapefiles, raster, tables, codes, appendices, supplementary materials and other necessary files to replicate all analyses in the manuscript. <b>Vertebrate taxonomic and functional hotspots in the Brazilian Atlantic Forest</b> (2024) is published in the <b>Diversity & Distribution</b>.
DOI: 10.17632/276dwzdd5x
title: Plasma Photoinactivation of Bacterial Isolated from Blood Donors Skin: Potential of Security Barrier in Transfusional Therapy_Yanet Ventura-Enríquez et al., 2024_

description: Plasma Photoinactivation of Bacterial Isolated from Blood Donors Skin: Potential of Security Barrier in Transfusional Therapy: Yanet Ventura-Enríquez, Antonio Casas-Guerrero, María de Jesús Sánchez-Guzmán,Miguel Ángel Loyola-Cruz, Clemente Cruz-Cruz, Andres Emmanuel Nolasco-Rojas,Emilio Mariano Durán-Manuel, Dulce Milagros Razo Blanco-Hernández, Francisco Álvarez-Mora, Gabriela Ibáñez-Cervantes, Mónica Alethia Cureño-Díaz, Juan Manuel Bello-López, and Verónica Fernández-Sánchez.
DOI: 10.17632/gxxzxyx7f6
title: Dataset on the literature on public participation and consensus building: Bibliography and meta-analysis of selected studies

description: This dataset offers an insight into the scientific literature on conceptual and empirical approaches to public participation and consensus-building in urban planning, including heritage planning. It consists of 121 articles retrieved from the Scopus search engine which feature “public participation”, “consensus”, and “value and attribute” in the title, abstract, and author keywords.
DOI: 10.17632/vgdm3299fp
title: Effect of temperature on hematological and biochemical parameters when the biological sample from rats kept in room temperature, thermocol, polypropylene box and innovative portable refrigerator

description: This data was generated for the preclinical studies where biological samples from rats such as blood, serum, liver were stored in different storage conditions such as room temperature, thermocol box, polypropylene box and in an innovative portable battery-operated re-chargeable refrigerator "Emvolio" developed by Blackfrog Technologies Private Limited, Manipal, India. The integrity of biochemical and hematological parameters are given, which indicates that Emvolio is maintaining a constant temperature for 10 hrs. The data also suggests that Emvolio can be effectively used in preclinical sample preservation and transportation. 

Emvolio is battery operated small, volume refrigerator for medicines, vaccines, food, beverages, dairy etc. and has Indian Patent (Patent number 201941013056; https://ipindiaservices.gov.in/publicsearch). These data also support its preclinical uses in laboratories where animal test samples can be preserved and transported.
DOI: 10.17632/w4g3fk9yhs
title: Data for: Monsoon-influenced variations of the calcareous and siliceous plankton and productivity of the western Bay of Bengal during the past 80 kyr

description: This supporting information provides the biogeochemical data and planktonic δ18O used in the main article. Contents of this file are 3 tables (Table S1 to S3). Caption for Tables S1 to S3 Table S1. Results of biogenic silica (BSi), CaCO3, total organic carbon (TOC) content, and the ratio of TOC and total nitrogen (TOC/TN) of sediments from core site Hole 19B. Table S2. Results of Globigerinoides ruber s.s. δ18O of sediments from core site Hole 19B. Table S3. Results of Neogloboquadrina dutertrei δ18O and the records of Globigerinoides ruber sensu stricto δ18O minus Neogloboquadrina dutertrei δ18O (Δδ18Or-d) of sediments from core site Hole 19B.
DOI: 10.6084/m9.figshare.28114379.v1
title: 20250101_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.14813127.v1
title: Cervical cell exosome proteomics

description: Exosomes were isolated from culture media samples of ectocervical and endocervical epithelial cells, and cervical stromal cells under untreated control conditions, infectious, and oxidative stress conditions. The protein cargo of these exosomes were analyzed for proteomic analysis using nano-LC-MS/MS.
DOI: 10.6084/m9.figshare.9761393.v1
title: Supplementary Material for: Reduced Cerebellar Size at Term-Equivalent Age Is Related to a 17% Lower Mental Developmental Index in Very Preterm Infants without Brain Injury

description: <b><i>Introduction:</i></b> Cerebellar injury is increasingly recognized as a relevant complication of premature birth. However, the prevalence of reduced cerebellar growth and its consequences for neurodevelopmental outcome in preterm infants without overt brain injury remain to be defined in detail. The aim of this study was to assess the transcerebellar diameter (TCD) at term-equivalent age (TEA) in very preterm infants without brain injury and to evaluate whether TCD is related to neurodevelopmental outcome in this population. <b><i>Methods:</i></b> Very preterm infants underwent magnetic resonance imaging at TEA. Infants with any grade of supra- or infratentorial brain injury were excluded. TCD was measured and categorized using existing cut-off values as normal TCD and mild or severe TCD reduction. Psychomotor Developmental index (PDI) and Mental Developmental index (MDI) were assessed using Bayley Scales of Infant Development II and III at a corrected age of 2 years. <b><i>Results:</i></b> A total of 166 infants with a mean gestational age of 29.9 ± 1.8 weeks and a mean birth weight of 1,317 ± 393 g were included. Mean TCD of girls was significantly lower compared to the mean TCD of boys (<i>p</i> = 0.004). TCD reduction was present in 8 infants (4.8%). Infants with a mild TCD reduction achieved lower mean MDI than infants with normal TCD (<i>p</i> = 0.021). <b><i>Discussion:</i></b> We found that reduced TCD was associated with a 17% lower mean MDI at a corrected age of 2 years. Thus, TCD at TEA may be used as an imaging marker for adverse cognitive outcome in the apparently low-risk group of preterm infants without brain injury.
DOI: 10.17632/28g3jt3c22
title: Raw_data_figures_Regeneration in calcareous sponge relies on ‘purse-string’ mechanism and the rearrangements of actin cytoskeleton

description: Raw images from manuscript. Fixation method (if used) is stated as well as applied immunostaining. 

The crucial step in any regeneration process is epithelization, i.e. the restoration of epithelium structural and functional integrity. Epithelialization requires cytoskeletal rearrangements, primarily of actin filaments and microtubules. Sponges (phylum Porifera) are early branching metazoans with pronounced regenerative abilities. Calcareous sponges have a unique step during regeneration: formation of a temporary structure, regenerative membrane which initially covers a wound. It forms due to the morphallactic rearrangements of exopinaco- and choanoderm epithelial-like layers. The current study quantitatively evaluates morphological changes and characterises underlying actin cytoskeleton rearrangements during regenerative membrane formation in asconoid calcareous sponge Leucosolenia variabilis, through a combination of time-lapse imaging, immunocytochemistry, and confocal laser scanning microscopy. Regenerative membrane formation has non-linear stochastic dynamics with numerous fluctuations. The pinacocytes at the leading edge of regenerative membrane form a contractile actomyosin cable. Regenerative membrane formation either depend on its contraction or being coordinated through it. The cell morphology changes significantly during regenerative membrane formation. Exopinacocytes flatten, their area increases, while circularity decreases. Choanocytes transdifferentiate into endopinacocytes, losing microvilli collar and flagellum. Their area increases and circularity decreases. Subsequent redifferentiation of endopinacocytes into choanocytes is accompanied by inverse changes in cell morphology. All transformations are based on actin filament rearrangements similar to those characteristic of bilaterian animals. Altogether, we provide here a qualitative and quantitative description of cell transformations during reparative epithelial morphogenesis in a calcareous sponge.