cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc29zkrm
title: CCDC 2144541: Experimental Crystal Structure Determination

description: Related Article: Yu Chen, Michael G. Gardiner, Ping Lan, Martin G. Banwell|2022|J.Org.Chem.|87|6146|doi:10.1021/acs.joc.2c00383
DOI: 10.5517/ccdc.csd.cc29zksn
title: CCDC 2144542: Experimental Crystal Structure Determination

description: Related Article: Yu Chen, Michael G. Gardiner, Ping Lan, Martin G. Banwell|2022|J.Org.Chem.|87|6146|doi:10.1021/acs.joc.2c00383
DOI: 10.5517/ccdc.csd.cc29zndc
title: CCDC 2144623: Experimental Crystal Structure Determination

description: Related Article: Molly M. Haskins, Matteo Lusi, Michael J. Zaworotko|2022|Cryst.Growth Des.|22|3333|doi:10.1021/acs.cgd.2c00150
DOI: 10.5517/ccdc.csd.cc29znfd
title: CCDC 2144624: Experimental Crystal Structure Determination

description: Related Article: Molly M. Haskins, Matteo Lusi, Michael J. Zaworotko|2022|Cryst.Growth Des.|22|3333|doi:10.1021/acs.cgd.2c00150
DOI: 10.5517/ccdc.csd.cc29lccn
title: CCDC 2132811: Experimental Crystal Structure Determination

description: Related Article: Ningchao Liu, Hirofumi Morimoto, Fan Wu, Xiaojuan Lv, Bentian Xiao, Daiki Kuzuhara, Jianming Pan, Fengxian Qiu, Naoki Aratani, Zhen Shen, Hiroko Yamada, Songlin Xue|2022|Org.Lett.|24|3609|doi:10.1021/acs.orglett.2c01147
DOI: 10.5517/ccdc.csd.cc2b87sn
title: CCDC 2152881: Experimental Crystal Structure Determination

description: Related Article: Alexandra C. Brown, Niklas B. Thompson, Daniel L. M. Suess|2022|J.Am.Chem.Soc.|144|9066|doi:10.1021/jacs.2c01872
DOI: 10.5517/ccdc.csd.cc2b87tp
title: CCDC 2152882: Experimental Crystal Structure Determination

description: Related Article: Alexandra C. Brown, Niklas B. Thompson, Daniel L. M. Suess|2022|J.Am.Chem.Soc.|144|9066|doi:10.1021/jacs.2c01872
DOI: 10.5517/ccdc.csd.cc2b8rp2
title: CCDC 2153374: Experimental Crystal Structure Determination

description: Related Article: María Vicent-Morales, María Esteve-Rochina, Joaquín Calbo, Enrique Ortí, Iñigo J. Vitórica-Yrezábal, Guillermo Mínguez Espallargas|2022|J.Am.Chem.Soc.|144|9074|doi:10.1021/jacs.2c01957
DOI: 10.5517/ccdc.csd.cc2b8rq3
title: CCDC 2153375: Experimental Crystal Structure Determination

description: Related Article: María Vicent-Morales, María Esteve-Rochina, Joaquín Calbo, Enrique Ortí, Iñigo J. Vitórica-Yrezábal, Guillermo Mínguez Espallargas|2022|J.Am.Chem.Soc.|144|9074|doi:10.1021/jacs.2c01957
DOI: 10.5517/ccdc.csd.cc2b8rr4
title: CCDC 2153376: Experimental Crystal Structure Determination

description: Related Article: María Vicent-Morales, María Esteve-Rochina, Joaquín Calbo, Enrique Ortí, Iñigo J. Vitórica-Yrezábal, Guillermo Mínguez Espallargas|2022|J.Am.Chem.Soc.|144|9074|doi:10.1021/jacs.2c01957
DOI: 10.5517/ccdc.csd.cc2bl6fl
title: CCDC 2162449: Experimental Crystal Structure Determination

description: Related Article: Si-Yong Yin, Chongqing Pan, Wen-Wen Zhang, Chen-Xu Liu, Fangnuo Zhao, Qing Gu, Shu-Li You|2022|Org.Lett.|24|3620|doi:10.1021/acs.orglett.2c01141
DOI: 10.17632/6k964dcdf5.1
title: Data for analyzing dispersion of vehicular paths at signalized intersections

description: The data are used for analyzing the dispersion of vehicular paths at signalized intersections.
DOI: 10.17632/m6w3rrrnf6.1
title: Data for: Distribution of Pu isotopes and 210Pb in the Bohai Sea and Yellow Sea: Implications for provenance and transportation

description: Locations of sampling stations, water depth, grain size and 210Pbex, 226Ra and 238U activities, Pu isotopes activities and 240Pu/239Pu atom ratiosin the BS and NYS surface sediments during 2014.
DOI: 10.17632/rdwd9rkf2p.1
title: Experimental lunar magma ocean crystallization

description: The accretion of the Moon was followed by a lunar magma ocean stage. The fractional crystallization of this magma ocean was experimentally simulated.  The results yield the primordial stratification of the Moon from the cumulative mantle to the primordial crust. In detail, the mineral composition, the thickness of each layer and the evolving melt composition are determined. The results show that reworking (likely through overturn induced by Rayleigh-Taylor instabilities)  of this primordial cumulate layers is required to explain some of the lunar magmatic suites and also to explain a very much reduced modern crustal thickness with respect to the primordial one. The data file contains the analyses of minerals and melts across the entire fractional crystallization interval as well as mineral modes and layer thicknesses of each fractionation step.
DOI: 10.17632/7c49rz45c4.1
title: Bacterial levels and diversity in kitchen sponges and dishwashing brushes used by consumers

description: Data on bacterial levels and bacteriota results from sponges and brushes used by consumers. There are also data on usage information on the brushes and sponges reported by consumers.
The Excel file "Brushes and sponges" contains information about usage information on sponges and brushes as well as total bacterial counts and Salmonella counts. These are the data used in Table 2 and Table 4 in the article in Journal of Applied Microbiology by Møretrø et.al. with the same title as this dataset.
The Excel files "Run1_Norwegian" and "Run2_Portuguese, contain background data for microbiota analysis for Norwegian sponges and brushes and Portuguese sponges, respectively, and refer to data presented in Figure 1 and 2 and in Table 3 in the article in Journal of Applied Microbiology by Møretrø et.al. with the same title as this dataset.
DOI: 10.25919/xtxv-2878
title: QCAT Omnimap Data

description: Multiple ray cloud maps of Queensland Centre For Advanced Robotics (Pullenvale, QLD) aligned in the same coordinate frame. Including aerial and ground data. This was captured in order to allow easy access to the wide variety of environment structures at QCAT, including fields, compound areas, forests, brush, creeks and roads.
DOI: 10.6084/m9.figshare.14708005
title: Additional file 13 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides

description: Additional file 13: Table S6. The expression of all the genes in the RNA-seq data.
DOI: 10.6084/m9.figshare.14708005.v1
title: Additional file 13 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides

description: Additional file 13: Table S6. The expression of all the genes in the RNA-seq data.
DOI: 10.6084/m9.figshare.14708008.v1
title: Additional file 14 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides

description: Additional file 14: Table S7. The Protein quantitative information.
DOI: 10.6084/m9.figshare.14708014.v1
title: Additional file 16 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides

description: Additional file 16: Table S9. The list of KEGG pathways for DEPs in F26 vs F423 at each stage.
DOI: 10.6084/m9.figshare.14708011.v1
title: Additional file 15 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides

description: Additional file 15: Table S8. The list of GO terms for DEPs in F26 vs F423 at each stage.
DOI: 10.6084/m9.figshare.14708041
title: Additional file 8 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides

description: Additional file 8: Table S1. The summary of RNA-seq data.
DOI: 10.6084/m9.figshare.14708011
title: Additional file 15 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides

description: Additional file 15: Table S8. The list of GO terms for DEPs in F26 vs F423 at each stage.
DOI: 10.6084/m9.figshare.14708041.v1
title: Additional file 8 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides

description: Additional file 8: Table S1. The summary of RNA-seq data.
DOI: 10.6084/m9.figshare.14708044.v1
title: Additional file 9 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides

description: Additional file 9: Table S2. Time course sequencing data analysis of F26 under C. gloeosporioides for expression genes.
DOI: 10.6084/m9.figshare.21523824.v1
title: Additional file 3 of The relationship between menopausal syndrome and gut microbes

description: Additional file 3. Gut microbiota composition of phyla, genera, and species. There are 43 phyla, 281 genera, and 163 species were identified in the P (n = 77) and H (n = 24) groups.
DOI: 10.6084/m9.figshare.21523824
title: Additional file 3 of The relationship between menopausal syndrome and gut microbes

description: Additional file 3. Gut microbiota composition of phyla, genera, and species. There are 43 phyla, 281 genera, and 163 species were identified in the P (n = 77) and H (n = 24) groups.
DOI: 10.6084/m9.figshare.21523827
title: Additional file 4 of The relationship between menopausal syndrome and gut microbes

description: Additional file 4. KEGG level3 pathways of functional prediction. 50 KEGG level3 pathways enriched in the P group were found to be significantly higher than in H group.
DOI: 10.6084/m9.figshare.21523827.v1
title: Additional file 4 of The relationship between menopausal syndrome and gut microbes

description: Additional file 4. KEGG level3 pathways of functional prediction. 50 KEGG level3 pathways enriched in the P group were found to be significantly higher than in H group.
DOI: 10.6084/m9.figshare.14708008
title: Additional file 14 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides

description: Additional file 14: Table S7. The Protein quantitative information.
DOI: 10.6084/m9.figshare.14708044
title: Additional file 9 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides

description: Additional file 9: Table S2. Time course sequencing data analysis of F26 under C. gloeosporioides for expression genes.
DOI: 10.6084/m9.figshare.14708048
title: Additional file 1 of Analysis of selection signatures on the Z chromosome of bidirectional selection broiler lines for the assessment of abdominal fat content

description: Additional file 1: Supplementary Table 1.
DOI: 10.5519/qd.dndskwsf
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5359269 records)
DOI: 10.6084/m9.figshare.14708002.v1
title: Additional file 12 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides

description: Additional file 12: Table S5. Sequences of quantitative real time PCR primers.
DOI: 10.6084/m9.figshare.14707996
title: Additional file 10 of Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides

description: Additional file 10: Table S3. The list of GO terms for DEGs in F26 vs F423 at each stage.
DOI: 10.6084/m9.figshare.8940959
title: Additional file 2: of Systematic analysis of the lysine succinylome in the model medicinal mushroom Ganoderma lucidum

description: The identifed succinylated peptides in G. lucidum (Table S1); Conservative analysis of the succinylated proteins (Table S2); Analysis the sequence motifs of the succinylpeptides (Table S3); GO functional annotation of the succinylproteins (Table S4); Subcellular localizations of the succinylated proteins (Table S5); The related proteins based on GO enrichment analysis (Table S6); The modified proteins based on KEGG pathway enrichment analysis (Table S7); The succinylated proteins based on domain enrichment analysis (Table S8); The proteins obtained from PPI network analysis (Table S9); Lysine succinylated enzymes related to triterpenoid and polysaccharide metabolism (Table S10). (XLSX 280 kb)
DOI: 10.6084/m9.figshare.14708048.v1
title: Additional file 1 of Analysis of selection signatures on the Z chromosome of bidirectional selection broiler lines for the assessment of abdominal fat content

description: Additional file 1: Supplementary Table 1.
DOI: 10.6084/m9.figshare.8940959.v1
title: Additional file 2: of Systematic analysis of the lysine succinylome in the model medicinal mushroom Ganoderma lucidum

description: The identifed succinylated peptides in G. lucidum (Table S1); Conservative analysis of the succinylated proteins (Table S2); Analysis the sequence motifs of the succinylpeptides (Table S3); GO functional annotation of the succinylproteins (Table S4); Subcellular localizations of the succinylated proteins (Table S5); The related proteins based on GO enrichment analysis (Table S6); The modified proteins based on KEGG pathway enrichment analysis (Table S7); The succinylated proteins based on domain enrichment analysis (Table S8); The proteins obtained from PPI network analysis (Table S9); Lysine succinylated enzymes related to triterpenoid and polysaccharide metabolism (Table S10). (XLSX 280 kb)
DOI: 10.6084/m9.figshare.8940983
title: Additional file 1 of Integrated identification of key genes and pathways in Alzheimerâ s disease via comprehensive bioinformatical analyses

description: Table S1. Information for samples in the included datasets. (ArrayExpress datasets). Included detailed information of samples of hippocampus and entorhinal cortex regions extracted from GSE48350. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.8940983.v1
title: Additional file 1 of Integrated identification of key genes and pathways in Alzheimerâ s disease via comprehensive bioinformatical analyses

description: Table S1. Information for samples in the included datasets. (ArrayExpress datasets). Included detailed information of samples of hippocampus and entorhinal cortex regions extracted from GSE48350. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.14183846
title: Additional file 4 of Single-cell transcriptomic analysis of eutopic endometrium and ectopic lesions of adenomyosis

description: Additional file 4: Table S3. Coexisting genes in Venn.
DOI: 10.6084/m9.figshare.14183852.v1
title: Additional file 6 of Single-cell transcriptomic analysis of eutopic endometrium and ectopic lesions of adenomyosis

description: Additional file 6: Table S5. Clinical characteristics of AM patients and hysteromyoma samples used in this study.
DOI: 10.6084/m9.figshare.14183846.v1
title: Additional file 4 of Single-cell transcriptomic analysis of eutopic endometrium and ectopic lesions of adenomyosis

description: Additional file 4: Table S3. Coexisting genes in Venn.
DOI: 10.6084/m9.figshare.14183849
title: Additional file 5 of Single-cell transcriptomic analysis of eutopic endometrium and ectopic lesions of adenomyosis

description: Additional file 5: Table S4. DEGs of AM_EC vs. AM_EM (epithelial cells).
DOI: 10.6084/m9.figshare.14183849.v1
title: Additional file 5 of Single-cell transcriptomic analysis of eutopic endometrium and ectopic lesions of adenomyosis

description: Additional file 5: Table S4. DEGs of AM_EC vs. AM_EM (epithelial cells).
DOI: 10.6084/m9.figshare.14183852
title: Additional file 6 of Single-cell transcriptomic analysis of eutopic endometrium and ectopic lesions of adenomyosis

description: Additional file 6: Table S5. Clinical characteristics of AM patients and hysteromyoma samples used in this study.
DOI: 10.57745/4ecu1n
title: registrars.csv

description: Mapping between Registrar names observed in the wild and their Canonical name. Used to format the registration data and allow Registrar comparison.
DOI: 10.57745/jf7hmb
title: README.md

description: Description of the content of the dataset and the different files
DOI: 10.6084/m9.figshare.14183840
title: Additional file 2 of Single-cell transcriptomic analysis of eutopic endometrium and ectopic lesions of adenomyosis

description: Additional file 2: Table S1. Doublet score and predicted doublets.
DOI: 10.57745/0bq9pk
title: ns_rescan.db

description: SQLite database with the results of the 2nd phase of scanning
DOI: 10.57745/a6ibk1
title: data_sample.csv

description: A 10 000 lines sample of data.csv, to observe the format and test code. The full data is gzip-compressed.
DOI: 10.57745/rdod25
title: data.csv.gz

description: gzip-compressed CSV of 156M collected WHOIS and RDAP entries
DOI: 10.6084/m9.figshare.14183840.v1
title: Additional file 2 of Single-cell transcriptomic analysis of eutopic endometrium and ectopic lesions of adenomyosis

description: Additional file 2: Table S1. Doublet score and predicted doublets.
DOI: 10.6084/m9.figshare.8940992
title: Additional file 2 of Integrated identification of key genes and pathways in Alzheimer’s disease via comprehensive bioinformatical analyses

description: Table S2. Information for the DEGs identified from the GEO dataset (|log2FC| ≥ 1, p value&lt; 0.05). Included detailed information of all DEGs screened from hippocampus and entorhinal cortex regions. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.8940992.v1
title: Additional file 2 of Integrated identification of key genes and pathways in Alzheimer’s disease via comprehensive bioinformatical analyses

description: Table S2. Information for the DEGs identified from the GEO dataset (|log2FC| ≥ 1, p value&lt; 0.05). Included detailed information of all DEGs screened from hippocampus and entorhinal cortex regions. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.14183843
title: Additional file 3 of Single-cell transcriptomic analysis of eutopic endometrium and ectopic lesions of adenomyosis

description: Additional file 3: Table S2. DEGs of AM_EC vs. AM_EM (all cell types).
DOI: 10.6084/m9.figshare.14183843.v1
title: Additional file 3 of Single-cell transcriptomic analysis of eutopic endometrium and ectopic lesions of adenomyosis

description: Additional file 3: Table S2. DEGs of AM_EC vs. AM_EM (all cell types).
DOI: 10.6084/m9.figshare.8940995
title: Additional file 3 of Integrated identification of key genes and pathways in Alzheimerâ s disease via comprehensive bioinformatical analyses

description: Table S3. Information for biological process analysis of DEGs from hippocampus. Included detailed information of results of biological process analysis of DEGs from hippocampus. (XLSX 32 kb)
DOI: 10.35097/1460
title: Air quality monitoring data from Pallas, Finland for the period between December 21, 2021 and November 21, 2022, which was used for an intercomparison of aerosol light absorption instruments

description: Data comprise the measurements from MAAP, AE33, COSMOS, and PAAS-4λ
DOI: 10.6084/m9.figshare.8940995.v1
title: Additional file 3 of Integrated identification of key genes and pathways in Alzheimerâ s disease via comprehensive bioinformatical analyses

description: Table S3. Information for biological process analysis of DEGs from hippocampus. Included detailed information of results of biological process analysis of DEGs from hippocampus. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.8941001
title: Additional file 4 of Integrated identification of key genes and pathways in Alzheimerâ s disease via comprehensive bioinformatical analyses

description: Table S4. Information for cellular component analysis of DEGs from hippocampus. Included detailed information of results of cellular component analysis of DEGs from hippocampus. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.7892426
title: Regorafenib induces lethal autophagy arrest by stabilizing PSAT1 in glioblastoma

description: GBM (glioblastoma multiforme) is the most common and aggressive brain tumor with no curative options available. Therefore, it is imperative to develop novel potent therapeutic drugs for GBM treatment. Here, we show that regorafenib, an oral multi-kinase inhibitor, exhibits superior therapeutic efficacy over temozolomide, the first-line chemotherapeutic agent for GBM treatment both <i>in vitro</i> and <i>in vivo</i>. Mechanistically, regorafenib directly stabilizes PSAT1 (phosphoserine aminotransferase 1), a critical enzyme for serine synthesis, to trigger PRKAA-dependent autophagy initiation and inhibit RAB11A-mediated autophagosome-lysosome fusion, resulting in lethal autophagy arrest in GBM cells. Maintenance of PSAT1 at a high level is essential for regorafenib-induced GBM suppression. Together, our data provide novel mechanistic insights of regorafenib-induced autophagy arrest and suggest a new paradigm for effective treatment of GBM. <b>Abbreviations:</b> 3-MA: 3-methyladenine; ACACA: acetyl coenzyme A carboxylase alpha; ACTB/β-actin: actin, beta; AMPK: adenosine monophosphate-activated protein kinase; ATG5: autophagy related 5; CTSD: cathepsin D; DN-: dominant-negative; GBM: glioblastoma multiforme; LAMP1: lysosomal-associated membrane protein 1; MAP1LC3B/LC3B: microtubule associated protein 1 light chain 3 beta; PIK3C3/VPS34: phosphatidylinositol 3-kinase catalytic subunit type 3; PRKAA/AMPKα: protein kinase AMP-activated catalytic subunit alpha; PSAT1: phosphoserine aminotransferase 1; SQSTM1/p62: sequestosome 1; TKIs: tyrosine kinase inhibitors.
DOI: 10.6084/m9.figshare.8941001.v1
title: Additional file 4 of Integrated identification of key genes and pathways in Alzheimerâ s disease via comprehensive bioinformatical analyses

description: Table S4. Information for cellular component analysis of DEGs from hippocampus. Included detailed information of results of cellular component analysis of DEGs from hippocampus. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.7892426.v1
title: Regorafenib induces lethal autophagy arrest by stabilizing PSAT1 in glioblastoma

description: GBM (glioblastoma multiforme) is the most common and aggressive brain tumor with no curative options available. Therefore, it is imperative to develop novel potent therapeutic drugs for GBM treatment. Here, we show that regorafenib, an oral multi-kinase inhibitor, exhibits superior therapeutic efficacy over temozolomide, the first-line chemotherapeutic agent for GBM treatment both <i>in vitro</i> and <i>in vivo</i>. Mechanistically, regorafenib directly stabilizes PSAT1 (phosphoserine aminotransferase 1), a critical enzyme for serine synthesis, to trigger PRKAA-dependent autophagy initiation and inhibit RAB11A-mediated autophagosome-lysosome fusion, resulting in lethal autophagy arrest in GBM cells. Maintenance of PSAT1 at a high level is essential for regorafenib-induced GBM suppression. Together, our data provide novel mechanistic insights of regorafenib-induced autophagy arrest and suggest a new paradigm for effective treatment of GBM. <b>Abbreviations:</b> 3-MA: 3-methyladenine; ACACA: acetyl coenzyme A carboxylase alpha; ACTB/β-actin: actin, beta; AMPK: adenosine monophosphate-activated protein kinase; ATG5: autophagy related 5; CTSD: cathepsin D; DN-: dominant-negative; GBM: glioblastoma multiforme; LAMP1: lysosomal-associated membrane protein 1; MAP1LC3B/LC3B: microtubule associated protein 1 light chain 3 beta; PIK3C3/VPS34: phosphatidylinositol 3-kinase catalytic subunit type 3; PRKAA/AMPKα: protein kinase AMP-activated catalytic subunit alpha; PSAT1: phosphoserine aminotransferase 1; SQSTM1/p62: sequestosome 1; TKIs: tyrosine kinase inhibitors.
DOI: 10.6084/m9.figshare.8941010
title: Additional file 5 of Integrated identification of key genes and pathways in Alzheimerâ s disease via comprehensive bioinformatical analyses

description: Table S5. Information for molecular function analysis of DEGs from hippocampus. Included detailed information of results of molecular function analysis of DEGs from hippocampus. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8941010.v1
title: Additional file 5 of Integrated identification of key genes and pathways in Alzheimerâ s disease via comprehensive bioinformatical analyses

description: Table S5. Information for molecular function analysis of DEGs from hippocampus. Included detailed information of results of molecular function analysis of DEGs from hippocampus. (XLSX 17 kb)