cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/jnbn8c2phv.1
title: Supplementary Information for sample sources: Global analysis of cytosine and adenine DNA modifications across the tree of life

description: All the tissues, cell lines, yeast, and bacteria samples, unless differently stated, were extracted using Genomic Tip-20 kit (Qiagen) following the manufacturer's instructions.
References
1. Allen, G. C., M. A. Flores-Vergara, S. Krasynanski, S. Kumar, and W. F. Thompson. 2006. “A Modified Protocol for Rapid DNA Isolation from Plant Tissues Using Cetyltrimethylammonium Bromide.” Nature Protocols 1 (5): 2320–25.
2. Gossmann, Toni I., Achchuthan Shanmugasundram, Stefan Börno, Ludovic Duvaux, Christophe Lemaire, Heiner Kuhl, Sven Klages, et al. 2019. “Ice-Age Climate Adaptations Trap the Alpine Marmot in a State of Low Genetic Diversity.” Current Biology: CB 29 (10): 1712–20.e7.
DOI: 10.17632/n7s2pcv8yc.1
title: HoLEP

description: Holmium laser enucleation of  prostate (en-bloc method with early apical release)
DOI: 10.17632/jpk9zn78w2.1
title: LINF_300029500

description: CFIIm | pre-mRNA cleavage complex II Clp1-like
Leishmania infantum (strain JPCM5)
DOI: 10.17632/xsmjd3kyhk.1
title: LINF_300029900

description: DnaJ domain-containing protein | JDP38 | J38
Leishmania infantum (strain JPCM5)
DOI: 10.17632/nd759268kp.1
title: Data for: Prediction of the failure strain of FRP sheets on confined concrete columns with circular cross-section

description: This file has the entire database considered in the analysis as well as the assessment results reported in the paper.
DOI: 10.17632/y4hxjw6dw4.1
title: LINF_300030000

description: heat shock 70-related protein 1, mitochondrial | mtHSP70 | HSPA9B
Leishmania infantum (strain JPCM5)
DOI: 10.17632/yb7rsfxdrk.1
title: A. Appendix online time use Guatemala 2000-2014

description: Figures and Tables report the distribution of the time allocated by gender in the three activities,  Urban Guatemala 2000 and 2014.
DOI: 10.17632/tnm7n37yzw.1
title: LINF_300030100

description: heat shock 70-related protein 1, mitochondrial | mtHSP70 | HSPA9
Leishmania infantum (strain JPCM5)
DOI: 10.17632/nr5thc2sr9.1
title: LINF_300030200

description: heat shock 70-related protein 1, mitochondrial | mtHSP70 | HSPA9
Leishmania infantum (strain JPCM5)
DOI: 10.17632/4z28sv42xb.1
title: 2022_07_22_scoping_non_bacteria_text_S1

description: Text S1. Query development strategy adopted in the scoping review
DOI: 10.17632/xjn4bvbm39.1
title: 2022_07_22_scoping_non_bacteria_figure_S1

description: Figure S1. Geographic representation of countries from which bulk milk samples originate*, with enlarged European and Caribbean inserts.
DOI: 10.5281/zenodo.6833218
title: Long-term performance assessment of fully automatic biomedical glottis segmentation at the point of care

description: Minimal dataset to replicate findings and figures for the publication Groh et al., Long-term performance assessment of fully automatic biomedical glottis segmentation at the point of care.
DOI: 10.5281/zenodo.6833217
title: Long-term performance assessment of fully automatic biomedical glottis segmentation at the point of care

description: Minimal dataset to replicate findings and figures for the publication Groh et al., Long-term performance assessment of fully automatic biomedical glottis segmentation at the point of care.
DOI: 10.5281/zenodo.6899503
title: Generating Annual 4-m Land Cover Products over 28 Metropolises in China during 2000-2020

description: A 4-m fine-grained land cover products over the 28 provincial capital cities in China (mainly in temperate monsoon climate and subtropical monsoon climate zone, and categorized into 7 classes, i.e., cropland, forest, grass, shrub, water, impervious surface, and bare land) is generated through the proposed model; A 4-m annual land cover products during 2000-2020 in Wuhan, China is generated through the proposed model. To validate the effectiveness of the derived products, three verification approaches are employed. 1) evaluation by the consistency with the contemporary products including 10-m Esri Land Cover, 10-m FROMGLC10, and 30-m GlobeLand30 ; 2) evaluation by the publicly certified 4-m annotation dataset GID; 3) evaluation by the third-party-created annotation samples. The validation results can be viewed in the manuscript, and the reproduction executation details can be viewed at Readme.txt. The products is in .tif format, and validaiton region is in ENVI/hdr format. Users need to install ENVI software or Arcgis to read the product. "open_source_DETNet_code_and_simple_demo.rar" is open source code and the corresponding intruction.
DOI: 10.5281/zenodo.5819402
title: Generating Annual 4-m Land Cover Products over 28 Metropolises in China during 2000-2020

description: A 4-m fine-grained land cover products over the 28 provincial capital cities in China (mainly in temperate monsoon climate and subtropical monsoon climate zone, and categorized into 7 classes, i.e., cropland, forest, grass, shrub, water, impervious surface, and bare land) is generated through the proposed model; A 4-m annual land cover products during 2000-2020 in Wuhan, China is generated through the proposed model. To validate the effectiveness of the derived products, three verification approaches are employed. 1) evaluation by the consistency with the contemporary products including 10-m Esri Land Cover, 10-m FROMGLC10, and 30-m GlobeLand30 ; 2) evaluation by the publicly certified 4-m annotation dataset GID; 3) evaluation by the third-party-created annotation samples. The validation results can be viewed in the manuscript, and the reproduction executation details can be viewed at Readme.txt. The products is in .tif format, and validaiton region is in ENVI/hdr format. Users need to install ENVI software or Arcgis to read the product. "open_source_DETNet_code_and_simple_demo.rar" is open source code and the corresponding intruction.
DOI: 10.5281/zenodo.6423609
title: Data of "Revisiting the Late Paleozoic–Mesozoic tectonic evolution of epicontinental eastern Central Asian Orogenic Belt on the basis of detrital zircon"

description: <strong>Ds01.</strong> Table S1. Zircon U–Pb isotopic and trace element data of mica-quartz schist (14JH12-1) from the Hulin Basin. <strong>Ds02. </strong>Table S2. Zircon U–Pb isotopic and trace element data of fine sandstone (JHD53) from the Wandashan accretionary complex. <strong>Ds03.</strong> Table S3. Zircon U–Pb isotopic and trace element data of sandy slate (JHD44) from the Wandashan accretionary complex. <strong>Ds04.</strong> Table S4. Collected sedimentary rock samples and our samples in NE China, showing their original and renamed sample ID and dating data.
DOI: 10.5281/zenodo.6423608
title: Data of "Revisiting the Late Paleozoic–Mesozoic tectonic evolution of epicontinental eastern Central Asian Orogenic Belt on the basis of detrital zircon"

description: <strong>Ds01.</strong> Table S1. Zircon U–Pb isotopic and trace element data of mica-quartz schist (14JH12-1) from the Hulin Basin. <strong>Ds02. </strong>Table S2. Zircon U–Pb isotopic and trace element data of fine sandstone (JHD53) from the Wandashan accretionary complex. <strong>Ds03.</strong> Table S3. Zircon U–Pb isotopic and trace element data of sandy slate (JHD44) from the Wandashan accretionary complex. <strong>Ds04.</strong> Table S4. Collected sedimentary rock samples and our samples in NE China, showing their original and renamed sample ID and dating data.
DOI: 10.6084/m9.figshare.20129248
title: Studying the impact of diagonal-doping on thermal stability of main-group metal clusters via Born Oppenheimer molecular dynamics

description: Doping with a heteroatom is considered to be an effective tool in tuning the physico-chemical properties of metal clusters. Over a period of time, several experimental and theoretical investigations have been carried out to understand the effect of doping on structure, electronic properties and reactivity of main group clusters. However, issues pertaining to thermal stabilities of metal clusters, particularly in the context of heteroatom doping remain unexplored. Filling this lacuna, this report focuses on evaluating the finite temperature behaviour of the main group metal clusters which are doped with diagonally adjacent dopant atoms. Born-Oppenheimer Molecular Dynamical (BOMD) simulations are performed on diagonally doped LimMg, BemAl and BmSi (m=1−5) clusters (doped diagonal pairs). The thermal response of these doped diagonal pairs is also compared with the corresponding pristine clusters such as Lin, Mgn, Ben, Aln, Bn and Sin (n=2−6) clusters. The simulation trajectories and ionic motions are analysed and root mean square bond length fluctuations are calculated as a function of temperature. The results indicate that the diagonally doped BmSi (m=1−5) clusters are thermally more stable (1200 K) as compared to the other two doped clusters (LimMg, BemAl). The enhanced thermal stability is attributed to the higher binding energies noted for BmSi (m=1−5) clusters. Moreover, it is found that for the B-Si cluster systems, diagonal doping always enhances the thermal stability, whereas both diagonal doping and the size of the cluster affect the thermal stabilities of the LimMg, and BemAl cluster systems. An in-depth analysis of thermal-structural-electronic (frontier molecular orbitals) properties revealed that the strength of dopant-to-parent cluster interactions are playing a significant role in influencing the thermal stabilities of diagonally doped clusters. Overall this study also highlights how the heuristic chemical principle of ‘diagonal relationship’ widely used in main-group chemistry may be extended to cluster science to draw new insights regarding thermal stabilities of metal clusters.
DOI: 10.6084/m9.figshare.20129248.v1
title: Studying the impact of diagonal-doping on thermal stability of main-group metal clusters via Born Oppenheimer molecular dynamics

description: Doping with a heteroatom is considered to be an effective tool in tuning the physico-chemical properties of metal clusters. Over a period of time, several experimental and theoretical investigations have been carried out to understand the effect of doping on structure, electronic properties and reactivity of main group clusters. However, issues pertaining to thermal stabilities of metal clusters, particularly in the context of heteroatom doping remain unexplored. Filling this lacuna, this report focuses on evaluating the finite temperature behaviour of the main group metal clusters which are doped with diagonally adjacent dopant atoms. Born-Oppenheimer Molecular Dynamical (BOMD) simulations are performed on diagonally doped LimMg, BemAl and BmSi (m=1−5) clusters (doped diagonal pairs). The thermal response of these doped diagonal pairs is also compared with the corresponding pristine clusters such as Lin, Mgn, Ben, Aln, Bn and Sin (n=2−6) clusters. The simulation trajectories and ionic motions are analysed and root mean square bond length fluctuations are calculated as a function of temperature. The results indicate that the diagonally doped BmSi (m=1−5) clusters are thermally more stable (1200 K) as compared to the other two doped clusters (LimMg, BemAl). The enhanced thermal stability is attributed to the higher binding energies noted for BmSi (m=1−5) clusters. Moreover, it is found that for the B-Si cluster systems, diagonal doping always enhances the thermal stability, whereas both diagonal doping and the size of the cluster affect the thermal stabilities of the LimMg, and BemAl cluster systems. An in-depth analysis of thermal-structural-electronic (frontier molecular orbitals) properties revealed that the strength of dopant-to-parent cluster interactions are playing a significant role in influencing the thermal stabilities of diagonally doped clusters. Overall this study also highlights how the heuristic chemical principle of ‘diagonal relationship’ widely used in main-group chemistry may be extended to cluster science to draw new insights regarding thermal stabilities of metal clusters.
DOI: 10.6084/m9.figshare.20037192
title: First principles investigation on the hydrogen adsorption on planar aluminene with boron, carbon, and nitrogen as impurities

description: Materials including two-dimensional systems have been widely investigated for potential hydrogen storage. In this work, hydrogen adsorption on planar hexagonal aluminene with boron, carbon, and nitrogen decorations was studied using density functional theory. Results showed that boron, carbon, and nitrogen atom can be chemisorped without barriers on aluminene sites: top, hollow, and bridge. Density of states (DOS) showed that these systems remained metallic and nonmagnetic except for adatoms on top site of aluminene but its ferromagnetism are passivated once hydrogen atoms are adsorbed. The <i>p</i> orbitals of the adatoms and aluminium atoms formed the chemical bonding as shown by the DOS and supported by the charge density difference. Potential energy barriers were found in hydrogen adsorption on all systems indicating additional energy is needed to adsorb hydrogen on all systems. Hydrogen is chemisorped on surfaces where adatoms are at the top and bridge site through its <i>s</i> orbital and <i>p</i> orbital of the adatom, while H<sub>2</sub> is physisorped for adatoms on the hollow site. The presence of boron, carbon, and nitrogen atoms on aluminene can reduce the hydrogen capacity of pristine aluminene due to the potential energy barriers.
DOI: 10.6084/m9.figshare.20037192.v1
title: First principles investigation on the hydrogen adsorption on planar aluminene with boron, carbon, and nitrogen as impurities

description: Materials including two-dimensional systems have been widely investigated for potential hydrogen storage. In this work, hydrogen adsorption on planar hexagonal aluminene with boron, carbon, and nitrogen decorations was studied using density functional theory. Results showed that boron, carbon, and nitrogen atom can be chemisorped without barriers on aluminene sites: top, hollow, and bridge. Density of states (DOS) showed that these systems remained metallic and nonmagnetic except for adatoms on top site of aluminene but its ferromagnetism are passivated once hydrogen atoms are adsorbed. The <i>p</i> orbitals of the adatoms and aluminium atoms formed the chemical bonding as shown by the DOS and supported by the charge density difference. Potential energy barriers were found in hydrogen adsorption on all systems indicating additional energy is needed to adsorb hydrogen on all systems. Hydrogen is chemisorped on surfaces where adatoms are at the top and bridge site through its <i>s</i> orbital and <i>p</i> orbital of the adatom, while H<sub>2</sub> is physisorped for adatoms on the hollow site. The presence of boron, carbon, and nitrogen atoms on aluminene can reduce the hydrogen capacity of pristine aluminene due to the potential energy barriers.
DOI: 10.6084/m9.figshare.20145560
title: Supplementary Material for: Short and long term effects of chlorpyrifos on thyroid hormone axis and brain development in Xenopus laevis

description: Introduction The extensive use of the insecticide chlorpyrifos (CPF) throughout the world has brought increased scrutiny on its environmental and health impact. CPF is a cholinergic neurotoxicant, however exposure to low noncholinergic doses is associated with numerous neurodevelopmental effects in animal models. In this study, we aimed to assess CPF for its potential to disrupt thyroid hormone signalling and investigate the short- and long-term effects on neurodevelopment by using Xenopus laevis. Methods The thyroid hormone (TH) disrupting potential of CPF was assessed using TH-sensitive transgenic Tg(thibz:eGFP) tadpoles. The consequences of early embryonic exposure were examined by exposing fertilized eggs for 72 hours to environmentally relevant CPF concentrations (10-10M and 10-8M). Three endpoints were evaluated: 1) gene expression in whole embryonic brains immediately after exposure, 2) mobility and brain morphology one week after exposure and 3) brain morphology and axon diameters at the end of metamorphosis (2 months after the exposure). Results CPF disrupted TH signaling in Tg(thibz:eGFP) tadpoles. The expression of genes klf9, cntn4, oatp1c1 and tubb2b was downregulated in response to CPF. Tadpoles exposed to CPF exhibited increased mobility and altered brain morphology compared to control tadpoles. Early embryonic exposure of CPF affected myelinated axon diameter, with exposed animals exhibiting shifted frequency distributions of myelinated axons diameters towards smaller diameters in the hindbrain of froglets. Discussion/Conclusion This study provides more evidence of the endocrine and neurodevelopment disrupting activity of CPF. Further experimental and epidemiological studies are warranted to determine the long-term consequences of early CPF exposure on brain development.
DOI: 10.6084/m9.figshare.20342763
title: JS62 genome

description: The nuclear and mitochondrial genomes of <em>Ustilaginoidea virens</em> strain JS62, a fungal pathogen causing Rice False Smut
DOI: 10.6084/m9.figshare.20342763.v1
title: JS62 genome

description: The nuclear and mitochondrial genomes of <em>Ustilaginoidea virens</em> strain JS62, a fungal pathogen causing Rice False Smut
DOI: 10.34740/kaggle/dsv/3982975
title: WallStreetBets 2022
DOI: 10.5281/zenodo.4986068
title: BAM reference data: XPS raw data of Al-coated titania nanoparticles (JRCNM62001a and JRCNM62002a)

description: The raw data are given as VAMAS-File. The measurement condtions are given in the file. The C1s-fits are provided as ascii-files. For further information please look at Radnik, J. Kersting, R., Hagenhoff, B., Bennet, F., Ciornii, D.; Nymark, P., Grafström R. and Hodoroaba, V.-D. <em>Nanomaterials </em><strong>2021</strong>, <em>11</em>, 639. https://doi.org/10.3390/nano11030639. The transmission function is obtained as ascii-file trm.dat. The energy scale is kinetic energy. Measurement conditions: XPS measurements were performed at an Axis Ultra DLD (KRATOS, Manchester, UK) with monochromatic Al K radiation (E = 1486.6 eV). The electron emission angle was 0° and the source-to-analyzer angle was 60°. The binding energy scale of the instrument was calibrated following a Kratos analytical procedure, which uses ISO 15472 binding energy data. The setting of the instrument was the hybrid lens mode and the slot mode with an analysis area of approximately 300x700 m². Furthermore, charge neutralization with a flood gun was used. All spectra were recorded in the fixed analyzer transmission (FAT) mode. The samples were measured as powders prepared on a special stainless-steel sample holder.
description: The data were audited and are BAM reference data.
DOI: 10.5281/zenodo.4986067
title: BAM reference data: XPS raw data of Al-coated titania nanoparticles (JRCNM62001a and JRCNM62002a)

description: The raw data are given as VAMAS-File. The measurement condtions are given in the file. The C1s-fits are provided as ascii-files. For further information please look at Radnik, J. Kersting, R., Hagenhoff, B., Bennet, F., Ciornii, D.; Nymark, P., Grafström R. and Hodoroaba, V.-D. <em>Nanomaterials </em><strong>2021</strong>, <em>11</em>, 639. https://doi.org/10.3390/nano11030639. The transmission function is obtained as ascii-file trm.dat. The energy scale is kinetic energy. Measurement conditions: XPS measurements were performed at an Axis Ultra DLD (KRATOS, Manchester, UK) with monochromatic Al K radiation (E = 1486.6 eV). The electron emission angle was 0° and the source-to-analyzer angle was 60°. The binding energy scale of the instrument was calibrated following a Kratos analytical procedure, which uses ISO 15472 binding energy data. The setting of the instrument was the hybrid lens mode and the slot mode with an analysis area of approximately 300x700 m². Furthermore, charge neutralization with a flood gun was used. All spectra were recorded in the fixed analyzer transmission (FAT) mode. The samples were measured as powders prepared on a special stainless-steel sample holder.
description: The data were audited and are BAM reference data.
DOI: 10.15151/esrf-es-846305705
title: Mechanistic insights into the water splitting reaction on industrial Ni-based anodes.

description: With this experiment, we plan to get mechanistic insights into the oxygen evolution reaction on Ni-based electrocatalysts for the water splitting reaction. We plan to perform operando XAS measurements at the Ni and Fe K-edges, on Ni and Ni/Fe-based catalysts that have been prepared and fully characterized by electrochemical methods at the DeNora laboratories. The measurement will be carried out in fluorescence mode, on powder samples deposited onto conductive glassy carbon electrodes, in a custom designed spectro-electrochemical cell, and in industrial-like conditions. We plan to detect the oxidation states of Ni and Fe, and possible variations thereof during the course of the reaction. This mechanistic data will be a key information for the development of tailored materials for the industrial production of green hydrogen.
DOI: 10.18112/openneuro.ds003354.v1.0.1
title: EmpaToM with PPI-R, TAS, and EQ
DOI: 10.15468/h4vkp2
title: Antarctic Microbial Biodiversity(AMBIO) samples

description: This dataset describe sampling events for the BelSPO project Antarctic Microbial Biodiversity (AMBIO) project which aims to determine the microbial diversity in Antarctic aquatic ecosystems, using an integrated and standardised analysis. The samples, collected between 1997 and 2007, were further analysed with metabarcoding techniques during the CCAMBIO project. eDNA derived occurrences to be published in sibling datasets.
DOI: 10.5281/zenodo.4634519
title: Phenological time lapse images from canopy camera MC113 in Suonenjoki Pine stand

description: This record contains phenological time lapse images from camera Suonenjoki Pine stand. Camera was mounted at canopy view level at location 62.639572; 27.053779(N;E, WGS84). First set of images were taken between 15.05.2015--31.12.2016 (Version 1). Subsequent Versions extend the record with newer images, and the version number indicates the years covered by the record.<br> Cameras were set to fix white balance, brightness automatically adjusted by camera.Image have equal resolution throughout the time series, time indicated in UTC+2. Images are taken half-hourly during fixed day-time period over the year. Gaps in time series and dark images possibly exist.<br> More details on the camera installations and operation history can be found at doi 10.5281/zenodo.777952<br> The cameras were set up and images collected under EU Life+ (LIFE ENV/FI/000409) Monimet project, http://monimet.fmi.fi.<br> For further information contact Mikko Peltoniemi (mikko.peltoniemi@luke.fi)
DOI: 10.5281/zenodo.815488
title: Phenological time lapse images from canopy camera MC113 in Suonenjoki Pine stand

description: This record contains phenological time lapse images from camera Suonenjoki Pine stand. Camera was mounted at canopy view level at location 62.639572; 27.053779(N;E, WGS84). First set of images were taken between 15.05.2015--31.12.2016 (Version 1). Subsequent Versions extend the record with newer images, and the version number indicates the years covered by the record.<br> Cameras were set to fix white balance, brightness automatically adjusted by camera.Image have equal resolution throughout the time series, time indicated in UTC+2. Images are taken half-hourly during fixed day-time period over the year. Gaps in time series and dark images possibly exist.<br> More details on the camera installations and operation history can be found at doi 10.5281/zenodo.777952<br> The cameras were set up and images collected under EU Life+ (LIFE ENV/FI/000409) Monimet project, http://monimet.fmi.fi.<br> For further information contact Mikko Peltoniemi (mikko.peltoniemi@luke.fi)