cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28521008.v1
title: Genomic analyses reveal presence of extensively drug-resistant Salmonellaenterica serovars isolated from clinical samplesin Guizhou province, China, 2019-2023

description: The emergence of extensively drug-resistant (XDR) <i>Salmonella</i> in human represents a serious public health and therapeutic challenge. Our study presents the first data on the WGS-based characterization of XDR <i>Salmonella</i><i> </i>isolates from humans between 2019 and 2023 in Guizhou province, China. Meanwhile, XDR <i>Salmonella </i>isolates carried multiple ARGs on plasmids, which could promote the acquisition and dissemination of ARGs. Our findings offer significant biological insights into XDR <i>Salmonella</i> resistance mechanisms, and showed that implementing continuous dynamic surveillance will enhance our understanding of the epidemiology of XDR <i>Salmonella</i> in this region and help public health officials identify emerging trends and potential threats.
DOI: 10.6084/m9.figshare.28685327.v1
title: Kidney Vasculature and Ischemia

description: Kidney vasculature patterning and response to injury.
DOI: 10.6084/m9.figshare.7040060.v2
title: EMRBots: 10,000-patient database

description: A 10,000-patient database that contains in total 10,000 virtual patients, 36,143 admissions, and 10,726,505 lab observations.
DOI: 10.6084/m9.figshare.19401278.v1
title: Mehdipour_C3_ELISA.xls

description: Excel files for Figure 7.
DOI: 10.6084/m9.figshare.21130221.v1
title: Gene database of Mycobacterium tuberculosis

description: This dataset introduces the gene database of the human pathogen, <em>Mycobacterium tuberculosis</em>. Original data comes from the Genbank annotated genome, which was parsed by an in-house MATLAB genome analysis software to yield gene identifier, gene function, and gene sequence for each gene in the genome of the bacterium. It is hoped that this dataset will constitute a useful resource to spur more research into understanding the environmental lifestyle and pathogenesis mechanisms of this important human pathogen.
DOI: 10.6084/m9.figshare.23659653.v1
title: Anxiety-Disorders-plink.meta_P_Sorted.gz

description: GWAS summary statistics from anxiety disorders meta-analysis (combining genome-wide associations from UK Biobank, iPSYCH, ANGST, MVP, and FINNGEN)
DOI: 10.6084/m9.figshare.3102049.v1
title: An engineered endomorphin-2 gene for morphine withdrawal syndrome

description: S1 file is the data of fig2, S2 file is the data of fig4, S3 file is the data of fig5
DOI: 10.17608/k6.auckland.11660415.v1
title: Data_and_Code.zip

description: This link including the data and code for the paper: 'Urban expansion in Auckland, New Zealand: a GIS simulation via an intelligent self-adapting multiscale agent-based model'
DOI: 10.17632/7rsxyfsnd5
title: Early childhood caries development

description: Early childhood caries development
DOI: 10.17632/tcmmmpwv6m
title: Risk of Malignancy in Histiocytoid Sweet Syndrome: A Systematic Review and Reappraisal

description: The nature of the histiocytoid infiltrate in HSS has generated considerable controversy in the literature and, compared to classical SS, a higher risk of association with hematologic malignancies have been proposed by some authors and refuted by others. Compared to classical SS, we found that HSS lacks the clear female predominance, is associated with less extracutaneous manifestations and underlying inflammatory disorders and, very importantly, is related to a higher risk of underlying malignancy, particularly of the hematological type. Dermatologists should be aware of these distinctive features of HSS.
DOI: 10.6084/m9.figshare.23998923.v1
title: Long-read sequencing report with Oxford Nanopore Technologies of different soil samples using different DNA extraction methods.

description: Long-read sequencing report with Oxford Nanopore Technologies of different soil samples using different DNA extraction methods.
DOI: 10.6084/m9.figshare.3502238.v2
title: MNI T1 6thGen NLIN to MNI 2009b NLIN ANTs transform

description: This nonlinear transform warps between two different MNI templates.<br>Specifically, it warps from• MNI 152 6th generation atlas (used within SPM and FSL) that can be found here: http://nist.mni.mcgill.ca/?p=858<br>to the• MNI 152 2009b NLIN template (used within Lead-DBS) that can be found here: http://nist.mni.mcgill.ca/?p=904<br>The 2009b version (as opposed to the 2009a and c versions) is the only one available in 0.5mm resolution.<br>The transform has been applied to several atlases distributed within Lead-DBS from version 1.4.9.4 on.<br>More detailed information on this matter may be found here: http://www.lead-dbs.org/?p=1241<br><br><br>
DOI: 10.6084/m9.figshare.6818813.v2
title: NIR individual complete dataset

description: Complete dataset with individuals per row for four different body patches. Information on NIR reflectivity, Visible reflectivity, environmental variables and body size. NOTE: Residuals presented for the relationship between visible and NIR reflectivity at the individual level, however, analyses in paper were done at the species level so that column was recalculated in each analysis using a different tree.
DOI: 10.17632/67xd92zdkt
title: Supplementary figures for "Artifactual pseudo-cheilitis: a case series of an underreported condition"

description: Supplementary figures for "Artifactual pseudo-cheilitis: a case series of an underreported condition" published in JAAD Case Reports. Please see this article for full case and figure descriptions.
DOI: 10.17632/dz9x23fttt
title: High-resolution MRI data of brain C57BL/6 and BTBR mice in three different anatomical views

description: Eight groups of mice were set up: control C57Bl6 males and females, control BTBR males and females, maternally separated C57Bl6 males and females, and maternally separated BTBR males and females. On PND40, these animals underwent an intravital volumetric analysis of various brain regions by the MRI technique (Table 1). Brain morphology of the animals was studied on the equipment of a multi-access center, the “Center for Genetic Resources of Laboratory Animals” at the ICG SB RAS (RFMEFI62119X0023), i.e., on a horizontal tomograph (Biospec 117/16 USR, Bruker, Germany) with a magnetic field strength of 11.7 T. Three minutes before the analysis, the animals were immobilized by gas anesthesia (isoflurane, Baxter Healthcare Corp., USA) using an anesthesia machine (The Univentor 400 Anesthesia Unit, Univentor, Malta) and then restrained by the paws on an MRI table. The depth of anesthesia was monitored by means of a pneumatic breathing sensor (SA Instruments, Stony Brook, NY, USA) placed under the lower torso. A heated tomographic bed with circulating water (35 °C) was utilized to maintain normal body temperature of the mice. All images of mouse brains were obtained using a receive-transmitter volume (T12970V3) 1H radiofrequency coil. T2 images in three orthogonal projections were captured by the RARE (rapid with relaxation enhancement) method with the following pulse sequence parameters: TE = 11 ms, TR = 2.5 s (slice thickness 0.5 mm, field of view 2.0 × 2.0 cm, and matrix size 256 × 256 pixels).
DOI: 10.6084/m9.figshare.7185431.v1
title: The understanding game in discursive textual analysis in Science Education researches: revisiting puzzles and mosaics

description: Abstract: Sixteen thesis abstracts were analyzed that had been defended from 2012 to 2017 in a Postgraduate Program in Science Education, which used the Discursive Textual Analysis methodology (DTA). The phenomenological question posed was: "What is shown by the DTA methodology in the abstracts of doctoral theses in Science Education?" It was based on a phenomenological exercise, followed by a hermeneutical analysis, with searches for the etymology of words in pursuit of language meanings. As a result, the following categories were determined: "The puzzle: description and a priori theories as pre-understandings" and "The mosaic: the movement for understanding". It was understood that doing research with DTA involves phenomenological-hermeneutic analytical procedures that consist of the description of the perceived phenomenon, followed by the analysis movement in the hermeneutical spiral. With this, the fusion of horizons about the theme was sought, increasing the understanding that the ATD is a methodology increasingly inserted in Gadamerian hermeneutics.
DOI: 10.17632/vpykhtncdz
title: Global Database of Foraminiferal Organic Linings: ForamL Version 1.3

description: This database is an updated collection of references to images of Foraminiferal Organic Linings (FOLs) published in the available scientific literature (see Godos et al., 2021). All organic linings are derived from recent marine samples and sedimentary rocks worldwide. The previous analysis of these publications resulted in a collection of 155 scientific reports, illustrating 614 foraminiferal organic linings. Here we presented an updated version of ForamL contains 207 additional images not published in Godos et al. (2021). Most of them have been published recently, since 2021. All of the 821 organic linings have been assigned to supraordinal groups of the phylum Foraminifera (Pawlowski et al. 2013), as well as to basic morphologic types of chamber arrangements. The database consists of three tables that cover the whole Phanerozoic, split into the Cenozoic, Mesozoic, and Paleozoic, and then to systems/periods such as the “modern period”, Quaternary, Neogene, Paleogene, Cretaceous, Jurassic, Triassic, and older intervals. The ”modern period” is a very short artificial period created by the authors, encompassing foraminiferal organic linings collected from natural environments, representing both living and dead material. This group includes subfossil remains found in marine sediments that were not fully fossilized. They are considered to be relatively young on a geological scale, having come from periods too recent to be classified as true fossils. For each system, scientific publications are referenced chronologically by year of publication. 
The main criterion on which the available publications were evaluated in our analysis was the preparation methods: we included the research based on the on palynological procedures. The procedures included treating samples with hydrochloric acid (HCl) to remove carbonates, followed by hydrofluoric acid (HF) to remove silicates from the sample. The next step was to sieve the extracted organic matter through a 10 or 15 or 20 μm sieve to separate larger organic particles, including palynomorphs with foraminiferal organic linings, for further preparation of palynological slides.
DOI: 10.17632/zfnvhv78g9
title: IBM Duration Data_1993

description: As the data is widely used in econometric modelling of high-frequency data, we have used the same 3534 observations which were used by Tsay (2005, 2010).
DOI: 10.6084/m9.figshare.26313022.v1
title: Genome-based model for differentiating between infection and carriage Staphylococcus aureus

description: We address the disease-associated k-mers by using a comprehensive genome-wide association study (GWAS) to compare genetic variation of <i>S. aureus </i>isolates. Due to high-dimensional genomic data, a two-stage analysis process was performed to identify the disease-associated k-mers by multiple GWAS methods including the Linear Mixed Model (LMM),the phylogeny-based method (Scoary), the regularized regression model (Least Absolute Shrinkage and Selection Operator, LASSO) and the machine learning method (Random Forest, RF). The importance of each k-mer predictor was sorted by the mean decrease in impurity (Mean Decrease Gini, MDG).
DOI: 10.6084/m9.figshare.26936107.v3
title: The T Cell Receptor β Chain Repertoire of Tumor Infiltrating Lymphocytes Improves Neoantigen Prediction and Prioritization

description: Metadata for ELIFE paper about integrating TCR sequencing data to select and prioritize neoantigen.Processed data used in this paper.article : DOI: https://doi.org/10.7554/eLife.94658.2<br>
DOI: 10.17632/gpg8jnctrn
title: Fast and slow excitatory synapses on somatostatin interneurons in adult V1

description: Data files for Grier et al. "Selective Plasticity of fast and slow excitatory synapses on somatostatin interneurons in adult visual cortex" paper.
DOI: 10.17632/jt56fcysvj
title: Iranian date fruits ripeness classification and synthetic image generation

description: Dataset of color images of Iranian dates of the Berhi variety. The images correspond to three different stages of ripeness of the dates: Khalal (unripe dates), Rotab (ripe) and Tamar (overripe). The challenge is to develop an accurate and fast method for classifying the images. Original images of date fruits were captured at a resolution of 883x556 pixels in Iranian date orchards. Prior to model ingestion, each image was pre-processed by cropping it to a standardized 256x256 pixel square. There are 50 images for each class, making a total of 150 images.

The dataset also contains synthetic images. In this case, the challenge is to develop a method for generating realistic date images in the three stages. The synthetic images were generated using StyleGAN3, with horizontal flipping applied during training to increase data diversity. There are 480 synthetic images for each class, making a total of 1440 images.

The images are organized in three folders:
- Original. Contains the original images captured in 883x556 pixels in JPG format.
- Preprocessed. Contains the images cropped to 256x256 pixels in JPG format.
- Synthetic. Contains the synthetic images generated with StyleGAN3, with size 256x256 pixels in PNG format.
DOI: 10.6084/m9.figshare.14552136.v10
title: Gun Violence

description: The data on mass shootings is from https://www.gunviolencearchive.org/ . See the codebook for full details. A mass shooting is defined as four or more people injured or killed, because of firearms, excluding the shooter. <br>The curated datasets are included here along with a research question and guiding questions.<br><br>For information of how this data is collected, go to: https://www.gunviolencearchive.org/explainer Definition for mass shooting and mass murder from the above website is given verbatim below:<br><br><b>Mass Shooting Methodology and Reasoning</b>: Mass Shootings are, for the most part an American phenomenon. While they are generally grouped together as one type of incident they are several different types including public shootings, bar/club incidents, family annihilations, drive-by, workplace and those which defy description but with the established foundation definition being that they have a minimum of four victims shot, either injured or killed, not including any shooter who may also have been killed or injured in the incident. GVA also presents the count of Mass Murder which, like the FBI's definition is four or more victims, killed, not including the shooter. Mass Murder by gun is a subset of the Mass Shooting count.<br><br><br>
DOI: 10.6084/m9.figshare.1494671.v1
title: Survey Instrument to evaulate basic team performance

description: This survey is a shortened version of the Team Assessment Questionnaire (Simmering & Wilcox, 1994). It was sent to the participating students of the course (post-course & post-exam) to evaluate their team performance. This was a voluntary excercise and the response rate to this survey was around 80%.
DOI: 10.6084/m9.figshare.25513591.v1
title: Raw data FMT urolithiasis

description: <b>Unraveling the Gut Microbiome's Role in Kidney Stone Formation: Insights from Fecal Microbiota Transplantation Studies</b>
DOI: 10.6084/m9.figshare.25975198.v2
title: The first experimentally obtained dataset on processing parameters and properties of soft magnetic composites v.2

description: Corrected version of data set was added. Some duplicate data has been removed, density values ​​have been remeasured and in some cases corrected.
DOI: 10.6084/m9.figshare.27643569.v4
title: Data and Code for "Temperature-dependent variations in under-canopy herbaceous foliar diseases following shrub encroachment in grasslands"

description: Data and Code for "Temperature-dependent variations in under-canopy herbaceous foliar diseases following shrub encroachment in grasslands"
DOI: 10.17632/cbkzp5b8hb
title: Dataset for a Dynamic Multi-Period Vehicle Routing Problem

description: This dataset presents the information related to the instances used in the experimental study of the paper "Dynamic Multi-Period Vehicle Routing with Touting". It has two sets of instances. The first set of instances is related to the historical data of a waste collection company, which spans a three-month period, while the second instance set is generated based on VRPTW instances of Solomon (1987).

Within the first instance set, there is data for two different drivers, who cover different geographical areas, presented in separate excel files (Instances_Driver1.xlsx and Instances_Driver2.xlsx). Each dataset includes i) three-months historical collections data of the company, which is used to compare the heuristic solutions with the ones obtained by an exact solver; ii) the normal distribution parameters that represent the customers' demand profiles, which are used to create simulation instances used in the experimental study for touting strategies. These distributions are used to generate random demand on each planning day; iii) distances and travel times between each node in the network.

These information are stored in three sheets of the files. The details are explained in the attached file Instances_Explanation.txt.

Driver 1 and 2 have 142 and 125 unique customers, respectively. However, the historical data includes a total of 273 and 260 orders for Driver 1 and Driver 2, respectively, which means that some customers have multiple orders within that 3-month period. In addition, some of these orders belong to the customers who ordered for the first time, in which case the distribution parameters cannot be obtained due to lack of history. To mimic these customers, we have selected a subset of the unique customers and used their distributions to generate these extra customers' parameters. Finally, the set of customers includes 215 and 205 customers for Driver 1 and Driver 2, respectively.

The second instance set includes the data generated based on the VRPTW instances of Solomon (1987), specifically C101, R101, and RC101. The file Solomon-Based Instances.xlsx has three 3 sheets for each of these instances, which present the the normal distribution parameters representing the customers' demand profiles. More details are provided in the attached file Instances_Explanation.txt.

Finally, the problem parameters, such as vehicle capacity and time limits are provided in the file "Problem Parameters.txt".

References

Solomon, M. M. (1987). Algorithms for the vehicle routing and scheduling problems with time window constraints. Operations research, 35 (2), 254-265.
DOI: 10.17632/wv7dcm5834
title: Research Document: Jaouad Karfali Economic Cycle Analysis with Numerical Time Cycles

description: Description:
This dataset contains historical economic data spanning from 1871 to 2024, used in Jaouad Karfali’s research on Economic Cycle Analysis with Numerical Time Cycles. The study aims to improve economic forecasting accuracy through the 9-year cycle model, which demonstrates superior predictive capabilities compared to traditional economic indicators.

Dataset Contents:
The dataset includes a comprehensive range of economic indicators used in the research, such as:

USGDP_1871-2024.csv – U.S. Gross Domestic Product (GDP) data.
USCPI_cleaned.csv – U.S. Consumer Price Index (CPI), cleaned and processed.
USWAGE_1871-2024.csv – U.S. average wages data.
EXCHANGEGLOBAL_cleaned.csv – Global exchange rates for the U.S. dollar.
EXCHANGEPOUND_cleaned.csv – U.S. dollar to British pound exchange rates.
INTERESTRATE_1871-2024.csv – U.S. interest rate data.
UNRATE.csv – U.S. unemployment rate statistics.
POPTOTUSA647NWDB.csv – U.S. total population data.
Significance of the Data:
This dataset serves as a foundation for a robust economic analysis of the U.S. economy over multiple decades. It was instrumental in testing the 9-year economic cycle model, which demonstrated an 85% accuracy rate in economic forecasting when compared to traditional models such as ARIMA and VAR.

Applications:

Economic Forecasting: Predicts a 1.5% decline in GDP in 2025, followed by a gradual recovery between 2026-2034.
Economic Stability Analysis: Used for comparing forecasts with estimates from institutions like the IMF and World Bank.
Academic and Institutional Research: Supports studies in economic cycles and long-term forecasting.
Source & Further Information:
For more details on the methodology and research findings, refer to the full paper published on SSRN:

https://ssrn.com/author=7429208
https://orcid.org/0009-0002-9626-7289

- Jaouad Karfali
DOI: 10.6084/m9.figshare.21395373.v1
title: Sample data

description: Five years of data (1980-1984) that can be used as input (and represents the input format) for the associated RF code R script. <br> N.B. to use without any modifications to the R script, this dataset must be stored in a sub-directory named 'vars'.
DOI: 10.17632/d6cr5nxgpn
title: Tree diversity reduces pathogen damage in temperate forests: a systematic review and meta-analysis

description: Quantitative and qualitative data used in meta-analysis and systematic review
DOI: 10.6084/m9.figshare.12387242.v2
title: R script and datasets - Cluster Analysis and Heat maps

description: This folder contained R scripts and data sets used to generate clustering dendogram and heatmaps as shown Fig. 3.
DOI: 10.6084/m9.figshare.1425432.v1
title: Supplementary data 1: sample ID, location and infection status.

description: Sample identification (by COI sequencing), collection location and date, and virus infection status of individual insects used for RNAseq.
DOI: 10.6084/m9.figshare.19122212.v2
title: Gapless-REMA100: A gapless 100-m Reference Elevation Model of Antarctica with voids filled by multi-source DEMs

description: Here we generate a gapless 100-m reference elevation model of Antarctica (Gapless-REMA100) with the voids filled by combining multi-source DEMs. All the voids in original REMA mosaic were automatically filled from multi-source DEMs e.g., TanDEM-X PolarDEM and other freely available DEM products covering entire or regional Antarctica. The experimental results with the Ice, Cloud and Land elevation Satellite-2 (ICESat-2) laser altimetry data validate that the filled 100-m REMA mosaic of voids can reach an elevation accuracy similar to that of the original REMA dataset for the west and east Antarctica ice sheet as well as the entire continent. In the Antarctic Peninsula area, the vertical accuracy of the filled REMA mosaic by the proposed method is superior to that of the officially released version of the Polar Geospatial Center (PGC). The file 'Gapless-REMA100.tif' is a gapless 100-m reference elevation model of Antarctica (Gapless-REMA100). The Gapless-REMA100 dataset is a newly released product published in our ISPRS P&RS 2022 paper. If this paper or the released Gapless-REMA100 dataset is helpful to your research, please cite it:Yuting Dong, Ji Zhao, Caiyong Li, and Mingsheng Liao, "Gapless-REMA100: A gapless 100-m Reference Elevation Model of Antarctica with voids filled by multi-source DEMs," ISPRS Journal of Photogrammetry and Remote Sensing, 2022.