cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.rnbamr
title: Occurrence Download

description: A dataset containing 19234 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Sciurus niger Linnaeus, 1758",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 19234 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003730-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w4lexe
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mammillaria senilis Lodd. ex Salm-Dyck"
 ]
}

 The dataset includes 17 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004417-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vzrwbd
title: Occurrence Download

description: A dataset containing 36261 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trichechus manatus Linnaeus, 1758"
 ]
}

 The dataset includes 36261 records from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137633-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ejyidz
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neofelis nebulosa (Griffith, 1821)",
 {
 "or" : [
 "Country is India",
 "Country is Nepal",
 "Country is China"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004417-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lsezcp
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Osmoxylon soelaense Philipson"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033758-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pvx8t3
title: Occurrence Download

description: A dataset containing 528 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Iran (Islamic Republic of)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Fusarium Link, 1809"
 ]
}

 The dataset includes 528 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039130-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gdtaya
title: Occurrence Download

description: A dataset containing 41076 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-5.5426 36.03133,-4.46594 36.66842,-6.05896 37.37889,-6.5094 36.68604,-5.5426 36.03133))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 41076 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017858-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wohdvu
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Akko brevis (Günther, 1864)"
 ]
}

 The dataset includes 32 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004417-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wq8hje
title: Occurrence Download

description: A dataset containing 47039 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Myricaceae"
 ]
}

 The dataset includes 47039 records from 565 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047584-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.6668465
title: BET raw data from Highly efficient triazolone/metal ion/polydopamine/MCM-41 sustained release system with pH sensitive for pesticide delivery

description: MCM-41 was prepared through the sol–gel method and encapsulated by polydopamine (PDA) before coordinated with metal ion to form a highly efficient sustained release system (M-PDA–MCM-41) for triazolone delivery. The characterization results confirmed the existence of the coordination bond between the PDA layer and triazolone through the bridge effect from metal ion, which enhanced the interaction between PDA–MCM-41 and triazolone. The adsorption capacity (AC) of Fe-PDA–MCM-41 increased up to 173 mg g<sup>–1</sup>, which was 160% more than that of MCM-41. The sustained release performance of M-PDA–MCM-41 in different pH values was investigated. Under the conditions of pH ≤7, the release speed of triazolone increased with pH decreasing. Whereas its release speed in the weak base condition was slower than in the neutral condition. Therefore, the as-synthesized system showed significant pH-sensitivity in the sustained release process, indicating that the sustained release system can be well stored in the neutral or basic environment and activated in the acid environment. Their sustained release curves described by Korsmeyer–Peppas equation at pH 7 showed the same behaviour, indicating that PDA decoration or metal ion coordination only increases the steric hindrance and the interaction between carrier and triazolone instead of changing the original structure of the pure MCM material in accordance with XRD and BET analysis results.
DOI: 10.6084/m9.figshare.7717070
title: Additional file 1: of Integrative analysis based on survival associated co-expression gene modules for predicting Neuroblastoma patientsâ survival time

description: Table S1. The table shown Gene symbols in unique co-expression modules, a comparison was performed between each pair of modules from microarray and RNA-seq. 17 GCN modules from microarray and 10 from RNA-seq are unique to its own data type. (XLS 36 kb)
DOI: 10.6084/m9.figshare.7717073
title: Additional file 2: of Integrative analysis based on survival associated co-expression gene modules for predicting Neuroblastoma patientsâ survival time

description: Table S2. Enrichment analysis for unique co-expression modules which are enriched with different biological processes, molecular functions, or specific pathways related to cancer physiology or to neurological functions (XLS 39 kb)
DOI: 10.6084/m9.figshare.24494110
title: Additional file 1 of Rare variants in GPR3 in POI patients: a case series with review of literature

description: Additional file 1: Supplementary table 1. Filtering steps of two WES data processing. Supplementary table 2. Primers used for Sanger sequencing. Supplementary table 3. List of 101 known POI causative genes. Supplementary table 4. List of 92 POI candidate genes.
DOI: 10.6084/m9.figshare.7717088.v1
title: Additional file 4: of Integrative analysis based on survival associated co-expression gene modules for predicting Neuroblastoma patientsâ survival time

description: Figure S2. The concordance index of the co-expression 24 unique RNA-seq modules obtained from the training set in three conditions: the training set, testing set, and randomly selected gene modules with equal number of genes in testing set. (ZIP 101 kb)
DOI: 10.6084/m9.figshare.6668465.v1
title: BET raw data from Highly efficient triazolone/metal ion/polydopamine/MCM-41 sustained release system with pH sensitive for pesticide delivery

description: MCM-41 was prepared through the sol–gel method and encapsulated by polydopamine (PDA) before coordinated with metal ion to form a highly efficient sustained release system (M-PDA–MCM-41) for triazolone delivery. The characterization results confirmed the existence of the coordination bond between the PDA layer and triazolone through the bridge effect from metal ion, which enhanced the interaction between PDA–MCM-41 and triazolone. The adsorption capacity (AC) of Fe-PDA–MCM-41 increased up to 173 mg g<sup>–1</sup>, which was 160% more than that of MCM-41. The sustained release performance of M-PDA–MCM-41 in different pH values was investigated. Under the conditions of pH ≤7, the release speed of triazolone increased with pH decreasing. Whereas its release speed in the weak base condition was slower than in the neutral condition. Therefore, the as-synthesized system showed significant pH-sensitivity in the sustained release process, indicating that the sustained release system can be well stored in the neutral or basic environment and activated in the acid environment. Their sustained release curves described by Korsmeyer–Peppas equation at pH 7 showed the same behaviour, indicating that PDA decoration or metal ion coordination only increases the steric hindrance and the interaction between carrier and triazolone instead of changing the original structure of the pure MCM material in accordance with XRD and BET analysis results.
DOI: 10.6084/m9.figshare.7192925.v1
title: Selection of marker peptides from casein phosphopeptide and application for quantification in infant formula

description: Casein phosphopeptides (CPPs) have been used worldwide as a nutritional supplement. However, the peptide components have been unknown; as a consequence, few quantification methods of CPP in infant formula were reported. This study introduced a quantification method based on peptide marker and corresponding peptide selection strategy using a simplified model with four commercial types of CPP. The peptides from four commercial CPPs were first identified. Due to the great variety of CPPs, two marker selection strategies were adopted: on one hand, universal marker peptide VLPVPQK can be used for the quantification of all four commercial CPPs, if the CPP can be obtained as a standard. On the other hand, the specific marker peptide LYQEPVLGPV can be used for identification and quantification of commercial CPP type K content in infant formula with a fixed calculation factor. In the simplified model, the combination use of the two markers can meet most of the requirements of CPP analysis in infant formula. The method validation revealed that this was suitable for the routine analysis laboratories without proteomics backgrounds. This selection strategy was suggested for the large-scale marker peptide selection with all commercial CPPs, which can give a comprehensive solution of CPP quantification in infant formula. <b>Abbreviations:</b> CPP: Casein phosphopeptides; LC: Liquid chromatography; TQMS: Triple quadrupole mass spectrometry; MRM: Multiple reaction monitoring; RSD: Relative standard deviation; <i>L</i>*: [<sup>13</sup>C<sub>6</sub>, <sup>15</sup>N]-leucine; SSSEE: Peptides sequence of serine-serine-serine-glutamic acid-glutamic acid
DOI: 10.6084/m9.figshare.7717106
title: Additional file 1: of Exosomes from endothelial progenitor cells improve outcomes of the lipopolysaccharide-induced acute lung injury

description: The RNA sequencing results showed genes were significantly altered by overexpression of miR-126-3p in SAECs. Human small airway epithelial cells (SAECs) were transfected with either control miRNA or miR-126-3p mimic for 48â h, and total RNA was isolated for RNA sequencing analysis. Genes significantly altered by miR-126-3p were listed. (XLSX 366 kb)
DOI: 10.6084/m9.figshare.7717106.v1
title: Additional file 1: of Exosomes from endothelial progenitor cells improve outcomes of the lipopolysaccharide-induced acute lung injury

description: The RNA sequencing results showed genes were significantly altered by overexpression of miR-126-3p in SAECs. Human small airway epithelial cells (SAECs) were transfected with either control miRNA or miR-126-3p mimic for 48â h, and total RNA was isolated for RNA sequencing analysis. Genes significantly altered by miR-126-3p were listed. (XLSX 366 kb)
DOI: 10.6084/m9.figshare.7717247
title: MOESM3 of 13C metabolic flux analysis-guided metabolic engineering of Escherichia coli for improved acetol production from glycerol

description: Additional file 3. Best fit-fluxes and flux confidence intervals.
DOI: 10.6084/m9.figshare.7717271.v1
title: MOESM1 of Bioinformatic gene analysis for potential biomarkers and therapeutic targets of atrial fibrillation-related stroke

description: Additional file 1: S1. Differentially expressed genes involved in AF samples.
DOI: 10.6084/m9.figshare.7717286.v1
title: MOESM3 of Bioinformatic gene analysis for potential biomarkers and therapeutic targets of atrial fibrillation-related stroke

description: Additional file 3: S3. Gene Ontology (GO) terms enrichment analysis of AF- and stroke-related differentially expressed genes.
DOI: 10.6084/m9.figshare.7717262
title: MOESM5 of 13C metabolic flux analysis-guided metabolic engineering of Escherichia coli for improved acetol production from glycerol

description: Additional file 5. Metabolomic data corresponding to the heat map in Fig.Â 4.
DOI: 10.6084/m9.figshare.7717295
title: MOESM4 of Bioinformatic gene analysis for potential biomarkers and therapeutic targets of atrial fibrillation-related stroke

description: Additional file 4: S4. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis among the AF- and stroke-related differentially expressed genes.
DOI: 10.6084/m9.figshare.7717052
title: Additional file 1: of Dermal mesenchymal stem cells: a resource of migration-associated function in psoriasis?

description: Clinical information of samples with psoriasis. The clinical information included the gender, age, disease history and psoriasis area and severity index (PASI) of patients. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7717301.v1
title: MOESM5 of Bioinformatic gene analysis for potential biomarkers and therapeutic targets of atrial fibrillation-related stroke

description: Additional file 5: S5. Relationship between diseases and co-expressed genes.
DOI: 10.6084/m9.figshare.7717310
title: Additional file 3: of Identification and characterization of genes with absolute mRNA abundances changes in tumor cells with varied transcriptome sizes

description: Table S1. Numbers of DEGs identified from the null datasets. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.7717070.v1
title: Additional file 1: of Integrative analysis based on survival associated co-expression gene modules for predicting Neuroblastoma patientsâ survival time

description: Table S1. The table shown Gene symbols in unique co-expression modules, a comparison was performed between each pair of modules from microarray and RNA-seq. 17 GCN modules from microarray and 10 from RNA-seq are unique to its own data type. (XLS 36 kb)
DOI: 10.6084/m9.figshare.7717301
title: MOESM5 of Bioinformatic gene analysis for potential biomarkers and therapeutic targets of atrial fibrillation-related stroke

description: Additional file 5: S5. Relationship between diseases and co-expressed genes.
DOI: 10.6084/m9.figshare.14526029.v1
title: Additional file 1 of Interaction between early-life pet exposure and methylation pattern of ADAM33 on allergic rhinitis among children aged 3–6 years in China

description: Additional file 1: Table S1. Description of data: twenty-five AR genes retrieved from Phenopedia database and references to the original publication reporting their association to AR.
DOI: 10.6084/m9.figshare.14526032
title: Additional file 2 of Interaction between early-life pet exposure and methylation pattern of ADAM33 on allergic rhinitis among children aged 3–6 years in China

description: Additional file 2: Table S2. Description of data: Target DNA methylation sequence information.
DOI: 10.6084/m9.figshare.7717082.v1
title: Additional file 3: of Integrative analysis based on survival associated co-expression gene modules for predicting Neuroblastoma patientsâ survival time

description: Figure S1. The concordance index of the co-expression 17 unique microarray modules obtained from the training set in three conditions: the training set, testing set, and randomly selected gene modules with equal number of genes in testing set. (ZIP 75 kb)
DOI: 10.6084/m9.figshare.7717088
title: Additional file 4: of Integrative analysis based on survival associated co-expression gene modules for predicting Neuroblastoma patientsâ survival time

description: Figure S2. The concordance index of the co-expression 24 unique RNA-seq modules obtained from the training set in three conditions: the training set, testing set, and randomly selected gene modules with equal number of genes in testing set. (ZIP 101 kb)
DOI: 10.6084/m9.figshare.7717262.v1
title: MOESM5 of 13C metabolic flux analysis-guided metabolic engineering of Escherichia coli for improved acetol production from glycerol

description: Additional file 5. Metabolomic data corresponding to the heat map in Fig.Â 4.
DOI: 10.6084/m9.figshare.7717271
title: MOESM1 of Bioinformatic gene analysis for potential biomarkers and therapeutic targets of atrial fibrillation-related stroke

description: Additional file 1: S1. Differentially expressed genes involved in AF samples.
DOI: 10.6084/m9.figshare.7717280.v1
title: MOESM2 of Bioinformatic gene analysis for potential biomarkers and therapeutic targets of atrial fibrillation-related stroke

description: Additional file 2: S2. Differentially expressed genes involved in stroke.
DOI: 10.6084/m9.figshare.7717334.v1
title: Additional file 6: of Identification and characterization of genes with absolute mRNA abundances changes in tumor cells with varied transcriptome sizes

description: Table S3. Pathway enrichment analysis of the absolute DEGs and relative DEGs for ten cancers. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.7717115.v1
title: Additional file 2: of Exosomes from endothelial progenitor cells improve outcomes of the lipopolysaccharide-induced acute lung injury

description: The RNA sequencing results showed genes were significantly altered by overexpression of miR-126-5p in SAECs. Human small airway epithelial cells (SAECs) were transfected with either control miRNA or miR-126-5p mimic for 48â h, and total RNA was isolated for RNA sequencing analysis. Genes significantly altered by miR-126-5p were listed. (XLSX 433 kb)
DOI: 10.6084/m9.figshare.12960008.v1
title: Gene co-expression and alternative splicing analysis of key metabolic tissues to unravel the regulatory signatures of fatty acid composition in cattle

description: Increasing the healthy/unhealthy fatty acid (FA) ratio in meat is one of the urgent tasks required to address consumer concerns. However, the regulatory mechanisms ultimately resulting in FA profiles vary among animals and remain largely unknown. In this study, using ~1.2 Tb high-quality RNA-Seq-based transcriptomic data of 188 samples from four key metabolic tissues (rumen, liver, muscle, and backfat) together with the contents of 49 FAs in backfat, the molecular regulatory mechanisms of these tissues contributing to FA formation in cattle were explored. Using this large dataset, the alternative splicing (AS) events, one of the transcriptional regulatory mechanisms in four tissues were identified. The highly conserved and absent AS events were detected in rumen tissue, which may contribute to its functional differences compared with the other three tissues. In addition, the healthy/unhealthy FA ratio related AS events, differential expressed (DE) genes, co-expressed genes, and their functions in four tissues were analysed. Eight key genes were identified from the integrated analysis of DE, co-expressed, and AS genes between animals with high and low healthy/unhealthy FA ratios. This study provides an applicable pipeline for AS events based on comprehensive RNA-Seq analysis and improves our understanding of the regulatory mechanism of FAs in beef cattle.
DOI: 10.6084/m9.figshare.14526032.v1
title: Additional file 2 of Interaction between early-life pet exposure and methylation pattern of ADAM33 on allergic rhinitis among children aged 3–6 years in China

description: Additional file 2: Table S2. Description of data: Target DNA methylation sequence information.
DOI: 10.6084/m9.figshare.7717334
title: Additional file 6: of Identification and characterization of genes with absolute mRNA abundances changes in tumor cells with varied transcriptome sizes

description: Table S3. Pathway enrichment analysis of the absolute DEGs and relative DEGs for ten cancers. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.7717052.v1
title: Additional file 1: of Dermal mesenchymal stem cells: a resource of migration-associated function in psoriasis?

description: Clinical information of samples with psoriasis. The clinical information included the gender, age, disease history and psoriasis area and severity index (PASI) of patients. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.12435845
title: Forecasting deaths of road traffic injuries in China using an artificial neural network

description: <b>Objectives:</b> This study was conducted to estimate road traffic deaths and to forecast short-term road traffic deaths in China using the Elman recurrent neural network (ERNN) model. <b>Methods:</b> An ERNN model was developed using reported police data of road traffic deaths in China from 2000 to 2017. Different numbers of neurons of the hidden layer were tested and different combinations of subgroup datasets have been used to develop the optimal ERNN model after normalization. The mean absolute error (MAE), the root mean square error (RMSE), and the mean absolute percentage error (MAPE) were measures of the deviation between predicted and observed values. Predicted road traffic deaths from the ERNN model and the seasonal autoregressive integrated moving average (SARIMA) model were compared using the MAPE. <b>Results:</b> By comparing the MAE, RMSE and MAPE of different numbers of hidden neurons and different ERNN models, the ERNN model provided the best result when the input neurons were set to 3 and hidden neurons were set to 10. The best validated neural model (3:10:1) was further applied to make predictions for the latest 12 months of deaths (MAPE = 4.83). The best SARIMA (0, 1, 1) (0, 1, 1)<sub>12</sub> model was selected from various candidate models (MAPE = 5.04). The fitted road traffic deaths using the two selected models matched closely with the observed deaths from 2000 to 2016. The ERNN models performed better than the SARIMA model in terms of prediction of 2017 deaths. <b>Conclusions:</b> Our results suggest that the ERNN model could be utilized to model and forecast the short-term trends accurately and to evaluate the impact of traffic safety programs when applied to historical road traffic deaths data. Forecasting traffic crash deaths will provide useful information to measure burden of road traffic injuries in China.