cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5965417.v1
title: Supplemental Figure for AmrZ Motility Manuscript

description: Figure showing normalized motility for an AmrZ deletion strain of Pseudomonas stutzeri as well as complements for this deletion strain. Underlying data is also provided as a .csv file.
DOI: 10.6084/m9.figshare.5965408
title: Youth Summary Files

description: These files provide summary statistics (mean, SD, Max) for counts/minute of the accelerometry data. Each line represents summarizes the data of one participant. There are separate files for wrist and waist, as well day (6a-10p), night and combined.
DOI: 10.6084/m9.figshare.5965408.v1
title: Youth Summary Files

description: These files provide summary statistics (mean, SD, Max) for counts/minute of the accelerometry data. Each line represents summarizes the data of one participant. There are separate files for wrist and waist, as well day (6a-10p), night and combined.
DOI: 10.4225/03/5aa1a8b0af9f3
title: Wolbachia enhances insect-specific flavivirus infection in Aedes aegypti mosquitoes

description: The following are data from a study looking at how Wolbachia in field release zones in Cairns, Australia have affected the flavivirus diversity of adult Aedes aegypti
DOI: 10.6084/m9.figshare.5965324
title: The literature associated with strategic retired agricultural lands and restoration

description: This is the complete list of studies for a systematic review and general synthesis of research within the domain of retired lands using the San Joaquin Desert in California as a case study from the Web Of Science. <br>
DOI: 10.6084/m9.figshare.5965324.v1
title: The literature associated with strategic retired agricultural lands and restoration

description: This is the complete list of studies for a systematic review and general synthesis of research within the domain of retired lands using the San Joaquin Desert in California as a case study from the Web Of Science. <br>
DOI: 10.6084/m9.figshare.5965309
title: gamma=5/3, eta=1.9

description: gamma=5/3, eta=1.9
DOI: 10.6084/m9.figshare.5965309.v1
title: gamma=5/3, eta=1.9

description: gamma=5/3, eta=1.9
DOI: 10.6084/m9.figshare.5965279
title: gamma= 4/3, eta=1.9

description: gamma= 4/3, eta=1.9
DOI: 10.6084/m9.figshare.5965279.v1
title: gamma= 4/3, eta=1.9

description: gamma= 4/3, eta=1.9
DOI: 10.6084/m9.figshare.5965243
title: Late Triassic (early Carnian–Norian) palynology of the Sentralbanken High, Norwegian Barents Sea

description: Four stratigraphic cores (7533/2-U-1, 2-U-2, 3-U-7 and 7534/4-U-1) drilled in the Sentralbanken High provide important reference sections for the Upper Triassic succession in the northern Barents Sea. The cores span the De Geerdalen, Flatsalen and Svenskøya formations (Kapp Toscana Group), which are equivalent to the Snadd to middle Fruholmen formations of the southern Barents Sea. Only cursory palynological study of the cores has been conducted previously, and no published palynofacies data is available. We present a detailed palynostratigraphy from the cores, and describe six informal palynological assemblages. Comparison with independently dated sections from elsewhere in the region enables a revised age interpretation of early Carnian to Norian for the cored interval, thereby improving correlation between Sentralbanken, Svalbard and the southern Barents Sea. A dominance of amorphous organic matter (AOM) and marine palynomorphs indicates a distal suboxic–anoxic marine depositional environment for the lower De Geerdalen Formation, with an abrupt change to a nearshore marine environment above an erosion surface in core 7534/4-U-1. Palynofacies from the remainder of the formation are characterised by a dominance of phytoclasts and are interpreted as indicative of a delta front to coastal plain environment. The reappearance of AOM, microforaminiferal test linings and marine microphytoplankton in the Flatsalen Formation in cores 7533/2-U-1 and 2-U-2 reflects a regional transgression of early Norian age. Reworked palynomorphs, shale rip-up clasts and a transition to phytoclast-dominated palynofacies above an erosion surface at the base of the overlying Svenskøya Formation is consistent with a disconformity, which was previously identified as a possible sequence boundary on the neighbouring island of Hopen.
DOI: 10.6084/m9.figshare.5965243.v1
title: Late Triassic (early Carnian–Norian) palynology of the Sentralbanken High, Norwegian Barents Sea

description: Four stratigraphic cores (7533/2-U-1, 2-U-2, 3-U-7 and 7534/4-U-1) drilled in the Sentralbanken High provide important reference sections for the Upper Triassic succession in the northern Barents Sea. The cores span the De Geerdalen, Flatsalen and Svenskøya formations (Kapp Toscana Group), which are equivalent to the Snadd to middle Fruholmen formations of the southern Barents Sea. Only cursory palynological study of the cores has been conducted previously, and no published palynofacies data is available. We present a detailed palynostratigraphy from the cores, and describe six informal palynological assemblages. Comparison with independently dated sections from elsewhere in the region enables a revised age interpretation of early Carnian to Norian for the cored interval, thereby improving correlation between Sentralbanken, Svalbard and the southern Barents Sea. A dominance of amorphous organic matter (AOM) and marine palynomorphs indicates a distal suboxic–anoxic marine depositional environment for the lower De Geerdalen Formation, with an abrupt change to a nearshore marine environment above an erosion surface in core 7534/4-U-1. Palynofacies from the remainder of the formation are characterised by a dominance of phytoclasts and are interpreted as indicative of a delta front to coastal plain environment. The reappearance of AOM, microforaminiferal test linings and marine microphytoplankton in the Flatsalen Formation in cores 7533/2-U-1 and 2-U-2 reflects a regional transgression of early Norian age. Reworked palynomorphs, shale rip-up clasts and a transition to phytoclast-dominated palynofacies above an erosion surface at the base of the overlying Svenskøya Formation is consistent with a disconformity, which was previously identified as a possible sequence boundary on the neighbouring island of Hopen.
DOI: 10.6084/m9.figshare.5965231
title: gamma=4/3, eta=2.9

description: gamma=5/3, eta=2.9
DOI: 10.6084/m9.figshare.5965231.v2
title: gamma=4/3, eta=2.9

description: gamma=5/3, eta=2.9
DOI: 10.6084/m9.figshare.5965231.v1
title: gamma=5/3, eta=2.9

description: gamma=5/3, eta=2.9
DOI: 10.6084/m9.figshare.5965228
title: BullGenomesStructure_Top1000Features.csv

description: Population Structure Analysis of Bull Genomes of European and Western AncestryScientific Reports 7, 40688<br><br>Supplementary Data 1: The top 1000 genomic features that are associated with the highly differentiated SNPs. When a given genomic feature is associated with multiple SNPs, the McFadden’s pseudo highest R2 corresponding to the most differentiated SNP is reported.
DOI: 10.6084/m9.figshare.5965228.v1
title: BullGenomesStructure_Top1000Features.csv

description: Population Structure Analysis of Bull Genomes of European and Western AncestryScientific Reports 7, 40688<br><br>Supplementary Data 1: The top 1000 genomic features that are associated with the highly differentiated SNPs. When a given genomic feature is associated with multiple SNPs, the McFadden’s pseudo highest R2 corresponding to the most differentiated SNP is reported.
DOI: 10.6084/m9.figshare.5965207
title: BullGenomesStructure_SNPs.csv

description: Population Structure Analysis of Bull Genomes of European and Western AncestryScientific Reports 7, 40688<br> Supplementary Data 2: The list of 396, 800 SNPs at the top 90 percentile of R2 &gt; .174.
DOI: 10.6084/m9.figshare.5965207.v2
title: BullGenomesStructure_SNPs.csv

description: Population Structure Analysis of Bull Genomes of European and Western AncestryScientific Reports 7, 40688<br> Supplementary Data 2: The list of 396, 800 SNPs at the top 90 percentile of R2 &gt; .174.
DOI: 10.6084/m9.figshare.5965207.v1
title: BullGenomesStructure_SNPs.csv

description: Supplementary Data 2: The list of 396, 800 SNPs at the top 90 percentile of R2 &gt; .174.
DOI: 10.6084/m9.figshare.5965165
title: Transcriptomic analysis of <i>Arabidopsis thaliana</i> plants treated with the Ky-9 and Ky-72 histone deacetylase inhibitors

description: Histone acetylation plays a pivotal role in plant growth and development, and is regulated by the antagonistic relationship between histone acetyltransferase (HAT) and histone deacetylase (HDAC). We previously revealed that some HDAC inhibitors confer high-salinity stress tolerance in plants. In this study, we identified two HDAC inhibitors, namely Ky-9 and Ky-72, which enhanced the high-salinity stress tolerance of <i>Arabidopsis thaliana</i>. Ky-9 and Ky-72 are structurally similar chlamydocin analogs. However, the <i>in vitro</i> inhibitory activity of Ky-9 against mammalian HDAC is greater than that of Ky-72. A western blot indicated that Ky-9 and Ky-72 increased the acetylation levels of histone H3, suggesting they exhibit HDAC inhibitory activities in plants. We conducted a transcriptomic analysis to investigate how Ky-9 and Ky-72 enhance high-salinity stress tolerance. Although Ky-9 upregulated the expression of more genes than Ky-72, similar gene expression patterns were induced by both HDAC inhibitors. Additionally, the expression of high-salinity stress tolerance-related genes, such as anthocyanin-related genes and a small peptide-encoding gene, increased by Ky-9 and Ky-72. These data suggest that slight structural differences in chemical side chain between HDAC inhibitors can alter inhibitory effect on HDAC protein leading to influence gene expression, thereby enhancing high-salinity stress tolerance in different extent.
DOI: 10.6084/m9.figshare.5965165.v1
title: Transcriptomic analysis of <i>Arabidopsis thaliana</i> plants treated with the Ky-9 and Ky-72 histone deacetylase inhibitors

description: Histone acetylation plays a pivotal role in plant growth and development, and is regulated by the antagonistic relationship between histone acetyltransferase (HAT) and histone deacetylase (HDAC). We previously revealed that some HDAC inhibitors confer high-salinity stress tolerance in plants. In this study, we identified two HDAC inhibitors, namely Ky-9 and Ky-72, which enhanced the high-salinity stress tolerance of <i>Arabidopsis thaliana</i>. Ky-9 and Ky-72 are structurally similar chlamydocin analogs. However, the <i>in vitro</i> inhibitory activity of Ky-9 against mammalian HDAC is greater than that of Ky-72. A western blot indicated that Ky-9 and Ky-72 increased the acetylation levels of histone H3, suggesting they exhibit HDAC inhibitory activities in plants. We conducted a transcriptomic analysis to investigate how Ky-9 and Ky-72 enhance high-salinity stress tolerance. Although Ky-9 upregulated the expression of more genes than Ky-72, similar gene expression patterns were induced by both HDAC inhibitors. Additionally, the expression of high-salinity stress tolerance-related genes, such as anthocyanin-related genes and a small peptide-encoding gene, increased by Ky-9 and Ky-72. These data suggest that slight structural differences in chemical side chain between HDAC inhibitors can alter inhibitory effect on HDAC protein leading to influence gene expression, thereby enhancing high-salinity stress tolerance in different extent.
DOI: 10.6084/m9.figshare.5963788
title: Broad Cross-reactive Antibody Response Elicited by Adjuvanted Vaccination with Recombinant Influenza Hemagglutinin (rHA) in Ferrets and Mice

description: Annual immunization against influenza virus is a large international public health effort. Accumulating evidence suggests that antibody mediated cross-reactive immunity against influenza hemagglutinin (HA) strongly correlates with long-lasting cross-protection against influenza virus strains that differ from the primary infection or vaccination strain. However, the optimal strategies for achieving highly cross-reactive antibodies to the influenza virus HA have not yet to be defined. In the current study, using Luminex-based mPlex-Flu assay, developed by our laboratory, to quantitatively measure influenza specific IgG antibody mediated cross-reactivity, we found that prime-boost-boost vaccination of ferrets with rHA proteins admixed with adjuvant elicited higher magnitude and broader cross-reactive antibody responses than that induced by actual influenza viral infection, and this cross-reactive response likely correlated with increased anti-stalk reactive antibodies. We observed a similar phenomenon in mice receiving three sequential vaccinations with rHA proteins from rHA either from A/California/07/2009 (H1N1) or A/Hong Kong/1/1968 (H3N2) viruses admixed with Addavax, an MF59-like adjuvant. Using this same mouse vaccination model. We determined that Addavax plays a more significant role in the initial priming event than in subsequent boosts. We also characterized the generation of cross-reactive antibody secreting cells (ASCs) and memory B cells (MBCs) when comparing vaccination to viral infection, we have also found that adjuvant plays a critical role in the generation of long-lived ASCs and MBCs cross-reactive to influenza viruses as a result of vaccination with rHA of influenza virus, and the increasing of stalk-reactive antibodies would likely contribute to this IgG mediated broad cross-reactions.
DOI: 10.6084/m9.figshare.5963788.v3
title: Broad Cross-reactive Antibody Response Elicited by Adjuvanted Vaccination with Recombinant Influenza Hemagglutinin (rHA) in Ferrets and Mice

description: Annual immunization against influenza virus is a large international public health effort. Accumulating evidence suggests that antibody mediated cross-reactive immunity against influenza hemagglutinin (HA) strongly correlates with long-lasting cross-protection against influenza virus strains that differ from the primary infection or vaccination strain. However, the optimal strategies for achieving highly cross-reactive antibodies to the influenza virus HA have not yet to be defined. In the current study, using Luminex-based mPlex-Flu assay, developed by our laboratory, to quantitatively measure influenza specific IgG antibody mediated cross-reactivity, we found that prime-boost-boost vaccination of ferrets with rHA proteins admixed with adjuvant elicited higher magnitude and broader cross-reactive antibody responses than that induced by actual influenza viral infection, and this cross-reactive response likely correlated with increased anti-stalk reactive antibodies. We observed a similar phenomenon in mice receiving three sequential vaccinations with rHA proteins from rHA either from A/California/07/2009 (H1N1) or A/Hong Kong/1/1968 (H3N2) viruses admixed with Addavax, an MF59-like adjuvant. Using this same mouse vaccination model. We determined that Addavax plays a more significant role in the initial priming event than in subsequent boosts. We also characterized the generation of cross-reactive antibody secreting cells (ASCs) and memory B cells (MBCs) when comparing vaccination to viral infection, we have also found that adjuvant plays a critical role in the generation of long-lived ASCs and MBCs cross-reactive to influenza viruses as a result of vaccination with rHA of influenza virus, and the increasing of stalk-reactive antibodies would likely contribute to this IgG mediated broad cross-reactions.
DOI: 10.6084/m9.figshare.5963788.v2
title: Broad Cross-reactive Antibody Response Elicited by Adjuvanted Vaccination with Recombinant Influenza Hemagglutinin (rHA) in Ferrets and Mice

description: Annual immunization against influenza virus is a large international public health effort. Accumulating evidence suggests that antibody mediated cross-reactive immunity against influenza hemagglutinin (HA) strongly correlates with long-lasting cross-protection against influenza virus strains that differ from the primary infection or vaccination strain. However, the optimal strategies for achieving highly cross-reactive antibodies to the influenza virus HA have not yet to be defined. In the current study, using Luminex-based mPlex-Flu assay, developed by our laboratory, to quantitatively measure influenza specific IgG antibody mediated cross-reactivity, we found that prime-boost-boost vaccination of ferrets with rHA proteins admixed with adjuvant elicited higher magnitude and broader cross-reactive antibody responses than that induced by actual influenza viral infection, and this cross-reactive response likely correlated with increased anti-stalk reactive antibodies. We observed a similar phenomenon in mice receiving three sequential vaccinations with rHA proteins from rHA either from A/California/07/2009 (H1N1) or A/Hong Kong/1/1968 (H3N2) viruses admixed with Addavax, an MF59-like adjuvant. Using this same mouse vaccination model. We determined that Addavax plays a more significant role in the initial priming event than in subsequent boosts. We also characterized the generation of cross-reactive antibody secreting cells (ASCs) and memory B cells (MBCs) when comparing vaccination to viral infection, we have also found that adjuvant plays a critical role in the generation of long-lived ASCs and MBCs cross-reactive to influenza viruses as a result of vaccination with rHA of influenza virus, and the increasing of stalk-reactive antibodies would likely contribute to this IgG mediated broad cross-reactions.
DOI: 10.6084/m9.figshare.5962837
title: Abundancia e ambiente

description: Waterbird species abundances and environmental variables for lakes in the upper Paraná River floodplain.
DOI: 10.6084/m9.figshare.5962837.v1
title: Abundancia e ambiente

description: Waterbird species abundances and environmental variables for lakes in the upper Paraná River floodplain.
DOI: 10.6084/m9.figshare.5962834
title: Optimization of image quality and acquisition time for lab-based X-ray microtomography using an iterative reconstruction algorithm

description: For further information please contact corresponding author: q.lin11@imperial.ac.uk
DOI: 10.6084/m9.figshare.5962753
title: From the Amazon: a comprehensive liver transcriptome of the tambaqui, Colossoma macropomum.

description: Liver gold standard transcriptome of tambaqui (Colossoma macropomum)
DOI: 10.6084/m9.figshare.5962753.v1
title: From the Amazon: a comprehensive liver transcriptome of the tambaqui, Colossoma macropomum.

description: Liver gold standard transcriptome of tambaqui (Colossoma macropomum)
DOI: 10.6084/m9.figshare.5962612
title: gamma=5/3, eta=5/2

description: gamma=5/3, eta=5/2
DOI: 10.6084/m9.figshare.5962612.v1
title: gamma=5/3, eta=5/2

description: gamma=5/3, eta=5/2
DOI: 10.6084/m9.figshare.5962597
title: Data

description: Raw results used in our experiments
DOI: 10.6084/m9.figshare.5962597.v1
title: Data

description: Raw results used in our experiments
DOI: 10.6084/m9.figshare.5962567
title: Mala alignments

description: alignments for phylogeny of Microspongium alariae, based on rbcL, COI and ITS1 regions.
DOI: 10.6084/m9.figshare.5962567.v1
title: Mala alignments

description: alignments for phylogeny of Microspongium alariae, based on rbcL, COI and ITS1 regions.
DOI: 10.6084/m9.figshare.5962564
title: Full list of publications in the orange cluster

description: This is a full list of publications found in the orange cluster of Figure 1 in the publication <i>Psychologists psychologizing scientific psychology</i>.
DOI: 10.6084/m9.figshare.5962513
title: Chaperone complex formation of the transcription factor MalR involved in maltose utilization and amylolytic enzyme production in <i>Aspergillus oryzae</i>

description: The Zn<sub>2</sub>Cys<sub>6</sub>-type transcription factor MalR controls the expression of maltose-utilizing (<i>MAL</i>) cluster genes and the production of amylolytic enzymes in <i>Aspergillus oryzae</i>. In the present study, we demonstrated that MalR formed a complex with Hsp70 and Hsp90 chaperones under non-inducing conditions similar to the yeast counterpart Mal63 and that the complex was released from the chaperone complex after the addition of the inducer maltose. The MalR protein was constitutively localized in the nucleus and mutation in both the putative nuclear localization signals (NLSs) located in the zinc finger motif and the C-terminal region resulted in the loss of nuclear localization. This result indicated the involvement of NSLs in the MalR nuclear localization. However, mutation in both NLSs did not affect the dissociation mode of the MalR-Hsp70/Hsp90 complex, suggesting that MalR activation induced by maltose can occur regardless of its intracellular localization. Model for the regulation of <i>A. oryzae</i> MalR by molecular chaperones. The figure is depicted based on the model of the yeast Mal63 (Ran et al., 2008).
DOI: 10.6084/m9.figshare.5962513.v1
title: Chaperone complex formation of the transcription factor MalR involved in maltose utilization and amylolytic enzyme production in <i>Aspergillus oryzae</i>

description: The Zn<sub>2</sub>Cys<sub>6</sub>-type transcription factor MalR controls the expression of maltose-utilizing (<i>MAL</i>) cluster genes and the production of amylolytic enzymes in <i>Aspergillus oryzae</i>. In the present study, we demonstrated that MalR formed a complex with Hsp70 and Hsp90 chaperones under non-inducing conditions similar to the yeast counterpart Mal63 and that the complex was released from the chaperone complex after the addition of the inducer maltose. The MalR protein was constitutively localized in the nucleus and mutation in both the putative nuclear localization signals (NLSs) located in the zinc finger motif and the C-terminal region resulted in the loss of nuclear localization. This result indicated the involvement of NSLs in the MalR nuclear localization. However, mutation in both NLSs did not affect the dissociation mode of the MalR-Hsp70/Hsp90 complex, suggesting that MalR activation induced by maltose can occur regardless of its intracellular localization. Model for the regulation of <i>A. oryzae</i> MalR by molecular chaperones. The figure is depicted based on the model of the yeast Mal63 (Ran et al., 2008).
DOI: 10.6084/m9.figshare.5962132
title: U1437B by MJMV 2018

description: Quantitative planktonic foraminifers taphonomy and palaeoceanographic implications over the last 1My from IODP Site 1437B data presented on figures, 2, 3, 4, 5<br>
DOI: 10.6084/m9.figshare.5962132.v1
title: U1437B by MJMV 2018

description: Quantitative planktonic foraminifers taphonomy and palaeoceanographic implications over the last 1My from IODP Site 1437B data presented on figures, 2, 3, 4, 5<br>
DOI: 10.6084/m9.figshare.5962099
title: U1436C by MJMV 2018

description: datat for paper by MJ Mleneck-Vautravers for site U1436C figures, 2, 3, 4, 5<br>Quantitative planktonic foraminifers taphonomy & palaeoceanographic implications over the last 1My from IODP Sites 1436 and 1437<br>
DOI: 10.6084/m9.figshare.5962099.v1
title: U1436C by MJMV 2018

description: datat for paper by MJ Mleneck-Vautravers for site U1436C figures, 2, 3, 4, 5<br>Quantitative planktonic foraminifers taphonomy & palaeoceanographic implications over the last 1My from IODP Sites 1436 and 1437<br>
DOI: 10.6084/m9.figshare.5962069
title: #TheTweetingBird: using #socialmedia to support your author community and drive their research articles’ visibility

description: A presentation on how a small journal publisher educates its own research community about the benefits of promoting its own research, and how to drive the visibility of their own research articles, using social media