cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.edk3ur
title: Occurrence Download

description: A dataset containing 437494 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Global distribution of marine forests [literature records]",
 "TaxonKey is one of (Rhodophyta, Chlorophyta, Phaeophyceae)"
 ]
}

 The dataset includes 437494 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000450-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zbwsr9
title: Occurrence Download

description: A dataset containing 178 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Antennaria pulchella Greene, Antennaria media subsp. pulchella (Greene) Chmiel.)"
 ]
}

 The dataset includes 178 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000462-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xvuq7r
title: Occurrence Download

description: A dataset containing 8755 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Antennaria plantaginifolia (L.) Hook., Antennaria plantaginifolia (L.) Richardson, 1823, Antennaria plantaginifolia var. monocephala Torr. & A.Gray, Antennaria plantaginifolia var. ambigens (Greene) Cronquist, Antennaria plantaginifolia var. parlinii (Fernald) Cronquist, Antennaria plantaginifolia var. petiolata (Fernald) A.Heller, Antennaria plantaginifolia var. arnoglossa (Greene) Cronquist, Antennaria plantaginifolia var. plantaginifolia)"
 ]
}

 The dataset includes 8755 records from 206 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000461-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dh38jp
title: Occurrence Download

description: A dataset listing the 25124 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Côte d’Ivoire",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 25124 records were derived from 707 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000446-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57782/vgchti
title: lattice random walks

description: The file contains als data files (*.dat and *.dens) und the gnuplot file (*.gp) to generate all plots (enter 'gnuplot ' in a shell) of the manuscript "Diffusion with stochastic reset on a lattice"
DOI: 10.34740/kaggle/dsv/11955782
title: Lumbar Spinal MRI Dataset
DOI: 10.5281/zenodo.15254843
title: TrialMatchAI resources

description: This repository contains compressed folders containing the necessary data resources (trials, criteria, models) to run the code of TrialMatchAI
DOI: 10.5281/zenodo.15254844
title: TrialMatchAI resources

description: This repository contains zipped folders containing the necessary data resources to run the code of TrialMatch
DOI: 10.5281/zenodo.15424310
title: TrialMatchAI resources

description: This repository contains zipped folders containing the necessary data resources to run the code of TrialMatch
DOI: 10.5281/zenodo.15440795
title: TrialMatchAI resources

description: This repository contains zipped folders containing the necessary data resources to run the code of TrialMatch
DOI: 10.5281/zenodo.15516900
title: TrialMatchAI resources

description: This repository contains compressed folders containing the necessary data resources (trials, criteria, models) to run the code of TrialMatchAI
DOI: 10.15468/dl.6w7gkg
title: Occurrence Download

description: A dataset containing 351377 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Saturniidae",
 "Year 1990-2025"
 ]
}

 The dataset includes 351377 records from 1127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001496-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vjsjxx
title: Occurrence Download

description: A dataset containing 828 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bombus beaticola (Tkalcu, 1968)",
 "Country is Japan",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 828 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001499-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sh4fn8
title: Occurrence Download

description: A dataset containing 49421 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Nyctereutes procyonoides (Gray, 1834)"
 ]
}

 The dataset includes 49421 records from 240 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001492-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14855657
title: Structural and Functional Insights into the Selective Inhibition of Mutant Tau Aggregation by Purpurin and Oleocanthal in Frontotemporal Dementia

description: Zenodo Dataset Description

This dataset provides source data and supplementary materials for the manuscript entitled"Structural and Functional Insights into the Selective Inhibition of Mutant Tau Aggregation by Purpurin and Oleocanthal in Frontotemporal Dementia."

Each file corresponds to specific figures in the main text or supplementary material to enable transparent data access and reproducibility.

 Source Data Files





Source Data File 1 (Figure 1b):Raw Thioflavin T fluorescence data for the aggregation kinetics of tau peptides (WT, P301L, V287I, and N279K) shown in Figure 1b.




Source Data File 2 (Figure 2a–b):Raw sensorgram data from surface plasmon resonance titration curve kinetics of purpurin and oleocanthal binding with WT and mutant R2R3 tau peptides, shown in Figure 2a and 2b.




Source Data File 3 (Figure 3a–d):Raw Thioflavin T fluorescence data showing dose-dependent aggregation inhibition of WT and mutant tau peptides by purpurin and oleocanthal, corresponding to Figure 3a–d.




Source Data File 4 (Figure 4a):Thioflavin T fluorescence traces depicting the elongation of preformed WT and P301L tau fibrils before and after treatment with purpurin or oleocanthal, shown in Figure 4a.




Source Data File 5 (Figure 5b):Quantification of CFP/YFP-positive inclusions and total cell count used to calculate normalized aggregate numbers in Tau RD P301S biosensor cells, shown in Figure 5b.




Source Data File 6 (Figure 6c):Quantification of intracellular aggregates (CFP/YFP inclusions) and cell count following post-transduction treatment with purpurin or oleocanthal, shown in Figure 6c.



Supplementary Data Files



Source Data File S1 (Figure S4):Fluorescence measurements of ThT, purpurin, and oleocanthal in the absence of peptide, shown in Supplementary Figure S4.

Source Data File S2 (Figure S13a):ThT fluorescence data for elongation inhibition of V287I and N279K tau peptides, before and after treatment with purpurin or oleocanthal, shown in Supplementary Figure S13a.

Source Data File S3 (Figure S16):Raw MTS absorbance values used to determine IC₅₀ values for purpurin and oleocanthal in Tau biosensor and CCRF-CEM cells, shown in Supplementary Figure S16.

Supplementary Dataset S1:MM-GBSA binding free energy calculations for purpurin and oleocanthal bound to WT and P301L tau filaments.

Supplementary Dataset S2:Residue-level decomposition analysis of purpurin and oleocanthal interactions with WT and P301L tau filaments.


Computational Methods Document



Title: Computational Methods – Monomeric Tau Docking and SimulationThis file provides detailed protocols for AlphaFold2-based structure prediction, molecular docking, MM-GBSA energy calculations, and molecular dynamics simulations of monomeric WT and P301L tau peptides with purpurin and oleocanthal. These methods support Supplementary Figures S9–S10 and Tables S1–S2 in the manuscript.
DOI: 10.5281/zenodo.14855658
title: Structural and Functional Insights into the Selective Inhibition of Mutant Tau Aggregation by Purpurin and Oleocanthal in Frontotemporal Dementia

description: Source Data File 1 (Figure 1): Raw thioflavin T (ThT) fluorescence data of tau peptide aggregation is shown in Figure 1b.

Source Data File 2 (Figure 2): Raw sensorgram data for titration curve kinetics of purpurin and oleocanthal binding with wildtype (WT) and mutant tau shown in Figure 2a, b.

Source Data File 3 (Figure 3): Raw thioflavin T (ThT) fluorescence data of tau peptide aggregation in the absence (control) and presence of purpurin or oleocanthal shown in Figure 3a.

Source Data File 4 (Figure 4): Number of nuclei and aggregates used for calculating the normalized aggregate number in HEK293T Tau-RD P301S FRET Biosensor cells shown in Fig. 4b.

Source Data File S1 (Figure S1): Raw fluorescence measurement data of thioflavin T (ThT), purpurin, and oleocanthal shown in Supplementary Figure S1.

Supplementary Dataset S1: MM-GBSA Binding Free Energy Calculations for Purpurin and Oleocanthal with WT and P301L Tau Filaments.

Supplementary Dataset S2: Residue Decomposition Analysis of Purpurin and Oleocanthal Binding to WT and P301L Tau Filaments.
DOI: 10.5281/zenodo.14947211
title: Structural and Functional Insights into the Selective Inhibition of Mutant Tau Aggregation by Purpurin and Oleocanthal in Frontotemporal Dementia

description: Source Data File 1 (Figure 1): Raw thioflavin T (ThT) fluorescence data of tau peptide aggregation is shown in Figure 1b.

Source Data File 2 (Figure 2): Raw sensorgram data for titration curve kinetics of purpurin and oleocanthal binding with wildtype (WT) and mutant tau shown in Figure 2a, b.

Source Data File 3 (Figure 3): Raw thioflavin T (ThT) fluorescence data of tau peptide aggregation in the absence (control) and presence of purpurin or oleocanthal shown in Figure 3a.

Source Data File 4 (Figure 4): Number of nuclei and aggregates used for calculating the normalized aggregate number in HEK293T Tau-RD P301S FRET Biosensor cells shown in Fig. 4b.

Source Data File S1 (Figure S1): Raw fluorescence measurement data of thioflavin T (ThT), purpurin, and oleocanthal shown in Supplementary Figure S1.

Supplementary Dataset S1: MM-GBSA Binding Free Energy Calculations for Purpurin and Oleocanthal with WT and P301L Tau Filaments.

Supplementary Dataset S2: Residue Decomposition Analysis of Purpurin and Oleocanthal Binding to WT and P301L Tau Filaments.
DOI: 10.5281/zenodo.15492033
title: Structural and Functional Insights into the Selective Inhibition of Mutant Tau Aggregation by Purpurin and Oleocanthal in Frontotemporal Dementia

description: Zenodo Dataset Description

This dataset provides source data and supplementary materials for the manuscript entitled"Structural and Functional Insights into the Selective Inhibition of Mutant Tau Aggregation by Purpurin and Oleocanthal in Frontotemporal Dementia."

Each file corresponds to specific figures in the main text or supplementary material to enable transparent data access and reproducibility.

 Source Data Files





Source Data File 1 (Figure 1b):Raw Thioflavin T fluorescence data for the aggregation kinetics of tau peptides (WT, P301L, V287I, and N279K) shown in Figure 1b.




Source Data File 2 (Figure 2a–b):Raw sensorgram data from surface plasmon resonance titration curve kinetics of purpurin and oleocanthal binding with WT and mutant R2R3 tau peptides, shown in Figure 2a and 2b.




Source Data File 3 (Figure 3a–d):Raw Thioflavin T fluorescence data showing dose-dependent aggregation inhibition of WT and mutant tau peptides by purpurin and oleocanthal, corresponding to Figure 3a–d.




Source Data File 4 (Figure 4a):Thioflavin T fluorescence traces depicting the elongation of preformed WT and P301L tau fibrils before and after treatment with purpurin or oleocanthal, shown in Figure 4a.




Source Data File 5 (Figure 5b):Quantification of CFP/YFP-positive inclusions and total cell count used to calculate normalized aggregate numbers in Tau RD P301S biosensor cells, shown in Figure 5b.




Source Data File 6 (Figure 6c):Quantification of intracellular aggregates (CFP/YFP inclusions) and cell count following post-transduction treatment with purpurin or oleocanthal, shown in Figure 6c.



Supplementary Data Files



Source Data File S1 (Figure S4):Fluorescence measurements of ThT, purpurin, and oleocanthal in the absence of peptide, shown in Supplementary Figure S4.

Source Data File S2 (Figure S13a):ThT fluorescence data for elongation inhibition of V287I and N279K tau peptides, before and after treatment with purpurin or oleocanthal, shown in Supplementary Figure S13a.

Source Data File S3 (Figure S16):Raw MTS absorbance values used to determine IC₅₀ values for purpurin and oleocanthal in Tau biosensor and CCRF-CEM cells, shown in Supplementary Figure S16.

Supplementary Dataset S1:MM-GBSA binding free energy calculations for purpurin and oleocanthal bound to WT and P301L tau filaments.

Supplementary Dataset S2:Residue-level decomposition analysis of purpurin and oleocanthal interactions with WT and P301L tau filaments.


Computational Methods Document



Title: Computational Methods – Monomeric Tau Docking and SimulationThis file provides detailed protocols for AlphaFold2-based structure prediction, molecular docking, MM-GBSA energy calculations, and molecular dynamics simulations of monomeric WT and P301L tau peptides with purpurin and oleocanthal. These methods support Supplementary Figures S9–S10 and Tables S1–S2 in the manuscript.
DOI: 10.15468/dl.cmbkp7
title: Occurrence Download

description: A dataset containing 524177 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Sciurus carolinensis Gmelin, 1788",
 "Year 1969-2025"
 ]
}

 The dataset includes 524177 records from 260 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001490-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/bd5-5cp-a5x
title: †Kargalites timorensis (Haniel, 1915)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xyp-p50-5xw
title: Neolissoceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.dndawa
title: Occurrence Download

description: A dataset containing 327 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Petrocodon"
 ]
}

 The dataset includes 327 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018183-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/3fw-hzx-20l
title: Veleroninoides scitulus (Brady, 1881)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kr1-09m-v7e
title: †Metalegoceras sundaicum (Haniel, 1915)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jv7-2ca-4b3
title: Ammolagena clavata (Jones & Parker, 1860)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zdt-5g8-d2h
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/els-vqb-r4e
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tgn-42q-7dn
title: †Paranotacythere (Paranotacythere) Bassiouni, 1974

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k9z-pl0-1g4
title: Lamarckina atlantica Cushman, 1931

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k91-9d6-sa8
title: Cyclammina cancellata Brady, 1879

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vl7-t3w-m0j
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3d2-9vg-1t0
title: Globorotalia truncatulinoides (d'Orbigny, 1839)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c2y-jnf-94g
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/05q-7q6-c05
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3tv-fvt-jzq
title: Textulariella barrettii (Jones & Parker, 1876)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/53a-9fg-nmr
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9kj-wct-4sc
title: Sigmoilopsis schlumbergeri (Silvestri, 1904)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/egv-9ve-68m
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j1r-9tn-ca5
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mnn-3t4-8bs
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bpm-j3q-x4y
title: Cornuspiramia antillarum (Cushman, 1922)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7q2-kqx-3r4
title: Neoconorbina terquemi (Rzehak, 1888)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ca1-why-0w4
title: Duvalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/46a-cqq-7jz
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y4f-3zt-apg
title: †Lophocythere (Lophocythere) Sylvester-bradley, 1948

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8c4-w3v-33q
title: Edentostomina cultrata (Brady, 1881)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/anw-bmy-tb9
title: †Nanacythere (Domeria) firma Herrig, 1969

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2ec-j0k-mx9
title: Hibolithes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0dc-v20-36q
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4sg-vw2-qfd
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f87-802-x3h
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qtj-58s-6bw
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2c6-h01-s53
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gqz-8eh-m9y
title: Duvalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rve-gnv-80c
title: Alveolophragmium Shchedrina, 1936

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tzc-c30-8x1
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yvq-vfd-lz1
title: Baculogypsinoides spinosus Yabe & Hanzawa, 1930

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/59z-wgk-4cy
title: Hibolithes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7fr-msm-rwz
title: Bulimina striata d'Orbigny in Guérin-Méneville, 1832

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/thx-0yp-wzt
title: Nonionoides grateloupii (d'Orbigny, 1839)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z47-d9e-nsa
title: †Metalegoceras sundaicum (Haniel, 1915)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5nl-6q0-tq6
title: †Metalegoceras sundaicum (Haniel, 1915)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gbs-35m-mxt
title: Oolina globosa (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15156/bio/sh1380262.10fu
title: SH1380262.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.