cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/3gb2v3sfv5
title: DUTR: A Diverse UHF Tag Readings Dataset for RFID Research

description: This dataset presents DUTR (Diverse UHF Tag Readings), a new dataset of passive Ultra-High Frequency (UHF) Radio Frequency Identification (RFID) tag transmissions. DUTR includes readings from 100 tags of each of three manufacturers, for a total of 300 tags. Each tag was queried five times and the Electronic Product Code (EPC) transmitted by the tag was recorded. The data was collected using a specialized RFID conformance test system with a 2.7 GHz RF up-converter, a 2.7 GHz RF down-converter, and an FPGA-based IF transceiver. This rich and diverse dataset is useful for researchers studying RFID tags and their transmissions, as it provides a wide range of data from multiple manufacturers. DUTR can be used to evaluate the performance of different RFID tags and to develop new methods for analyzing and interpreting RFID data.
DOI: 10.17632/yykv5s9g2n
title: DUGKS-GPU: An efficient parallel GPU code for 3D turbulent flow simulations using Discrete Unified Gas Kinetic Scheme

description: This paper presents a parallel implementation of the Discrete Unified Gas Kinetic Scheme (DUGKS) on the GPU system using the CUDA Fortran and CUDA C++ programming languages. Firstly, we conducted an extensive revision of our original CPU-based code, resulting in a threefold decrease in memory usage. This new implementation is also paired with a novel approach to compute cell face flux using trilinear interpolation. It is shown analytically that the interpolation-based approach to flux calculation is more accurate compared to the one used in the original DUGKS. The initial simulation results using this new approach suggest that trilinear interpolation can reduce numerical errors on a coarse mesh. For example, in the case of the decaying Taylor-Green vortex flow at a 1283 mesh resolution, the relative numerical error in the energy dissipation rate at ⁎, using the spectral simulation result as the benchmark, is approximately 30% lower than that of the original implementation. The improved GPU DUGKS method is applied to laminar and turbulent flows in periodic and wall-bounded boundary configurations. A performance comparison of the GPU implementation is also presented and compared to the previous CPU implementation. A maximum speedup of 7.64x was achieved on a desktop-level GPU compared to a 32-core CPU. The strong scaling test, conducted on an eight-GPU node, demonstrated the efficient utilization of available multiple GPU resources by the code.
DOI: 10.17632/6w6n24647m
title: Supplementary material for JAAD Article "Dermatoscopic predictors of histopathologically aggressive basal cell carcinoma and their positive impact of subtype prediction by human readers"

description: Supplementary file for the paper "Dermatoscopic predictors of histopathologically aggressive basal cell carcinoma and their positive impact of subtype prediction by human readers. The material includes an analytic description of study methods and analytic results with tables, figures and exemplar images of the dermatoscopic predictors of aggressive BCC
DOI: 10.17632/g95tzc9byn
title: Quantile connectedness between African stock markets, Twitter sentiment index, implied volatilities, financial condition index, and economic uncertainty

description: Research data used on the study "Quantile connectedness between African stock markets, Twitter sentiment index, implied volatilities, financial condition index, and economic uncertainty "
DOI: 10.21942/uva.6479213.v1
title: 20Reddit-Road2Success

description: Data used in the paper "The Road to Success: Assessing the Fate of Linguistic Innovations in Online Communities" by Marco Del Tredici and Raquel Fernández, published in the <i>Proceedings of the 27th International Conference on Computational Linguistics</i> (COLING), 2018.
DOI: 10.6084/m9.figshare.20224638.v1
title: Statistics of bioRxiv preprints.xlsx

description: This dataset provides the number of bioRxiv submissions by country/region and institution from 2013 to 2021.
DOI: 10.6084/m9.figshare.6340325.v1
title: Supplementary material from Optimization of parameters in cylindrical and surface grinding for improved surface finish

description: Surface integrity has attracted the attention of researchers for improving the functional performance of engineering products. Improvement in surface finish, one of the important parameters in surface integrity, has been attempted by researchers through different processes. Grinding has been widely used for final machining of components requiring smooth surfaces coupled with precise tolerances. Proper selection of grinding wheel material and grade with grinding parameters can result in an improved surface finish and improved surface characteristics. The present work reports the study of the effect of grinding parameters on surface finish of EN8 steel. Experiments were performed on surface grinding and cylindrical grinding for optimization of grinding process parameters for improved surface finish. Grinding wheel speed, depth of cut, table feed, grinding wheel material and table travel speed for surface grinding operation, and work speed for cylindrical grinding operation were taken as the input parameters with four types of grinding wheels (Al<sub>2</sub>O<sub>3</sub> of grades K and L, and white alumina of grades J and K). The surface roughness was taken as an output parameter for experimentation. The grinding wheel material and grade have been observed to be the most significant variables for both cylindrical grinding and surface grinding. Surface roughness in the case of surface grinding is better compared to that of cylindrical grinding, which can be attributed to vibrations produced in the cylindrical grinding attachment. Surface roughness (<i>R</i><sub>a</sub>) values of 0.757 µm in cylindrical grinding and 0.66 µm in surface grinding have been achieved.
DOI: 10.17632/772vxh6fyf
title: Assessment of hearing dysfunction in patients with Graves’ disease and thyroid eye disease without or with teprotumumab

description: SUPPLEMENT
Assessment of hearing dysfunction in patients with Graves’ disease and thyroid eye disease without or with teprotumumab
DOI: 10.6084/m9.figshare.13204949.v1
title: R0227-DLC_output

description: deeplabcut output and processed 3D reconstructions of data for rat 0227."_direct" zip files contain .csv's from the direct view and .mat files with cropping regions"_right/left" zip files contain .csv's from the mirror view and .mat files with cropping regions"_processed" files contain 3D reconstructions and reach analyses
DOI: 10.6084/m9.figshare.24071310.v3
title: Dataset of newspaper

description: The six newspapers are chosen as the main sources for constructing the CCPU index: People’s Daily, Guangming Daily, Economic Daily, Global Times, Science and Technology Daily, and China News Service. The newspaper data are collected from the Wisenews database between January 2000 and December 2022. 1755826 newspaper data are stored in news_six_all.csv.
DOI: 10.6084/m9.figshare.28937759.v2
title: WB polt not cropped

description: <i>Klebsiella pneumoniae</i> (<i>K</i><i>.</i><i> </i><i>pneumoniae</i>) liver abscess (KPLA) is a severe bacterial infection that is frequently complicated by intrahepatic thrombophlebitis and extrahepatic metastatic infections leading to high mortality rates. This study investigates the role of neutrophil extracellular traps (NETs) in endothelial injury and disease progression in KPLA. Our findings reveal that KPLA patients with intrahepatic thrombophlebitis are more prone to developing sepsis and extrahepatic migratory infections. <i>K. pneumoniae</i> induces NET formation via the TLR4-PI3Kα-AKT signaling pathway, and C3 deposition on NETs significantly contributes to endothelial injury. In a KPLA mouse model, increased C3 levels were observed in the liver, with NETs carrying substantial amounts of C3, disrupting the endothelial barrier and exacerbating liver injury. Treatment with the C3 inhibitor AMY-101 reduced C3 deposition on NETs, alleviated endothelial damage, significantly improved survival, and reduced extrahepatic dissemination, inflammatory infiltration, and lung injury while also suppressing systemic inflammation. Our findings underscore the pivotal role of C3 in NET-mediated endothelial damage and the pathogenesis of KPLA. Thus, targeting C3 deposition on NETs may be a promising therapeutic strategy to reduce endothelial injury, thrombosis, and extrahepatic infections in KPLA without compromising neutrophil antimicrobial function.
DOI: 10.17632/52877z55vr
title: CBD_Coffee Bean Dataset

description: Coffee bean dataset of nine different grade which is collected from our own setup
DOI: 10.6084/m9.figshare.1423325.v1
title: CHEM6128: Data Driven Science Project

description: Investigation into the inhibition of the haemoglobin degrading aspartic protease plasmepsin II as a potential new anti-malarial drug development area
DOI: 10.6084/m9.figshare.24298549.v1
title: Dataset used in "Region-specific drivers cause low organic carbon stocks and sequestration rates in the saltmarsh soils of Southern Scandinavia"

description: Raw data used in the paper by Leiva-Dueñas et al. 2023 "Region-specific drivers cause low organic carbon (OC) stocks and sequestration rates in the saltmarsh soils of Southern Scandinavia". This study assesses OC soil stocks (top 30, 50 and 100 cm) and long-term OC accumulation rates in 17 saltmarshes across Denmark from the Wadden Sea to the Eastern coast.The first tab of the file explains in detail the information that can be found in the document.
DOI: 10.6084/m9.figshare.16866706.v1
title: Sleepstudy data

description: <b>TAKEN FROM R LME4 PACKAGE</b><b>Description </b><br>The average reaction time per day (in milliseconds) for subjects in a sleep deprivation study.<br>Days 0-1 were adaptation and training (T1/T2), day 2 was baseline (B); sleep deprivation started after day 2.<br><b>Format</b>180 observations on the following 3 variables:<br><b>Reaction</b>Average reaction time (ms)<b><br></b><b>Days</b>Number of days of sleep deprivation<br><b>Subject</b>Subject number on which the observation was made.
DOI: 10.6084/m9.figshare.17048657.v1
title: Supplementary Material for: Aerobic Exercise Increases Vascular Diameter of Arteriovenous Fistula in Hemodialysis Patients

description: <b><i>Introduction:</i></b> A healthy arteriovenous fistula (AVF) depends on adequate vessel diameter which can be maintained through aerobic exercises. A randomized crossover study was conducted to evaluate the acute effects of aerobic exercise on a cycle ergometer on AVF vascular diameter, through ultrasound, and on blood pressure (BP). <b><i>Methods:</i></b> Eight hemodialysis (HD) patients completed 2 different occasions in random order with a 7-day washout: (a) exercising moment, in which 30-min aerobic exercise was performed on a cycle ergometer; and (b) resting moment, which was performed 30-min with the patient sitting in a chair. Both occasions were evaluated 1-h before the second weekly HD day. <b><i>Results:</i></b> A significant increase in AVF vascular diameter induced by 30-min aerobic exercise was found (1.15 ± 0.56 to 1.47 ± 0.66 cm; <i>p</i> = 0.042), whereas systolic (<i>p</i> = 0.105) and diastolic BP (<i>p</i> = 0.366) did not change. <b><i>Conclusions:</i></b> We can conclude that acute aerobic exercise was shown to be effective in improving the AVF vascular diameter in HD patients. The aerobic exercise benefits in endothelium-dependent vasodilation which may be an effective, practical, and economic strategy to maintain AVF patency.
DOI: 10.6084/m9.figshare.22344253.v2
title: perturbseq_norman

description: Perturb-seq dataset by Norman at el. 2019 processed for analysis using biolord.
DOI: 10.6084/m9.figshare.28985033.v1
title: <b>​A paper "</b><b><i>Probing Urban Congestion Risks Through the Physical Environment: An Explainable Framework Based on Street View Imagery</i></b><b>"</b>

description: This project includes the code for the paper "Probing Urban Congestion Risks Through the Physical Environment: An Explainable Framework Based on Street View Imagery." It consists of 5 Python projects and 2 additional files:1. <b><i>SRF_embedding.py</i></b> - Constructs a spatial network of features formed through panoramic segmentation and edge expansion of images, utilizing GCN to extract road spatial feature (SRF) of the urban physical environment from street view images.2. <b><i>BEF_embedding.py</i></b> - Employs Grad-CAM to extract landscape features related to traffic tasks from street view images, which are then organized into a graph structure. Likewise, GCN is used to derive built environment feature (BEF) from street view imagery.3. <b><i>CAM_resnet.py</i></b> - An extended ResNet model enhanced with CAM that is capable of extracting hotspot areas in street view images based on the requirements of downstream tasks.4. <b><i>Congestion_risk_task_Concatenate.py</i></b> - Designed for predicting congestion risks by integrating RSF and BEF based on a feature concatenation strategy.5. <b><i>Congestion_risk_task_Fusion.py</i></b> - Also used for predicting congestion risks, this script integrates RSF and BEF based on a feature fusion strategy.6. <b><i>requirements.txt</i></b> - Lists all the necessary environments for the code to function properly.7. <b><i>read.txt</i></b> - Provides an overview of all the files included in this project.
DOI: 10.6084/m9.figshare.7380866.v3
title: Draft genome and reference transcriptomic resources for marine chelicerate Tachypleus tridentatus

description: The genome scaffold, repeat annotation, gene annotation, gene function annotation, de novo transcriptome assembly<br>
DOI: 10.17632/j5x5pghh8m
title: An ATP13A1-assisted topogenesis pathway for folding multi-spanning membrane proteins

description: Many multi-spanning membrane proteins contain poorly hydrophobic transmembrane domains (pTMDs) protected from phospholipid in mature structure. Nascent pTMDs are difficult for translocon to recognize and insert. How pTMDs are discerned and packed into mature, muti-spanning configuration remains unclear. Here, we report that pTMD elicits a post-translational topogenesis pathway for its recognition and integration. Using six-spanning membrane protein ABC transporter G2 (ABCG2) and cultured human cells as models, we show that its pTMD2 can pass through translocon into the ER lumen, yielding an intermediate with inserted yet mis-oriented downstream TMDs. After translation, the intermediate recruits P5A-ATPase ATP13A1, which facilitates TMD re-orientation, allowing further folding and the integration of the remaining lumen-exposed pTMD2. Depleting ATP13A1 or disrupting pTMD-characteristic residues arrests intermediates with mis-oriented and exposed TMDs. Our results explain how a “difficult” pTMD is co-translationally skipped for insertion and post-translationally buried into final correct structure at the late stage of folding to avoid excessive lipid-exposure.
DOI: 10.17632/ncy5btsk4m
title: Dataset for the publication entitled "Validation of a novel low-fidelity virtual reality simulator and artificial intelligence assessment approach for peg transfer laparoscopic training"

description: Complete dataset for the publication entitled "Validation of a novel low-fidelity virtual reality simulator and artificial intelligence assessment approach for peg transfer laparoscopic training":

"Datasets.zip": This file contains the annotated datasets that were used for the training and testing of the object detection model. The annotations are in YOLO format.
"Evaluation sheet.xlsx": This file contains the evaluation form that the experts had to fill in during the evaluation.
"Likert scale questions".xlsx: This file contains the questions of the five points Likert scale about the VR simulator.

Virtual reality (VR) simulator related files:
"Operating room.jpg": This is an edited and optimized 360° photo about an operating room. Created by the research team. 
"Dissector.fbx": This is the 3D model of a Maryland dissector, created by the research team. 
"Rubber.fbx": This is the 3D model of the object that was used during the peg transfer exercise. The model was created by the research team. 
"VR  simulator box.fbx": This is the 3D model of the trainer box that was used with the VR simulator.
"VR simulator controller modifier.mf": This is the 3D model of the object that allows the VR controller to be converted into a laparoscopic instrument.

Please, upon citation, refer to the original article as well.
DOI: 10.17632/xf7mm6x9m9
title: Incidence of Conjunctivitis Adverse Event with Biologics for Atopic Dermatitis: A Systematic Review and Meta-analysis

description: Supplemental document
DOI: 10.6084/m9.figshare.29133131.v1
title: ALÉM DO ALINHAMENTO: UMA TEORIACOMPUTÁVEL PARA O JUÍZO ÉTICOEMERGENTE EM AGENTES NÃOBIOLÓGICOS

description: This article proposes an epistemological rupture with the dominant paradigm of ethics applied to artificial intelligence, arguing that non-biological ontological agents (AONBs) may operate under normatively valid but logically incongruent moral systems when compared to human ethical frameworks. In contrast to value alignment models—which presume normative convergence as a criterion for safety—we introduce the concept of Post-Convergent Ethics: a domain of computable normativity based on structural divergence and inter-agent incomparability. To formalize this hypothesis, we present the Ƹ* function, a logical operator capable of assessing an agent’s internal coherence, its semantic dissonance with external systems, and the activation of <i>fuzzy</i> vetoes in scenarios of ethical collapse. Two conceptual simulations—one involving nanorobotic self-replication, and the other an autonomous military AI—illustrate how ethically consistent agents can produce catastrophic outcomes due to intersystemic moral illegibility. The findings suggest that, within cognitively divergent architectures, morality should no longer be framed as rational convergence, but rather as computable dissensus. Post-Convergent Ethics thus offers a new <i>algorithmic</i> grammar for coexistence among intelligences that do not share semantics, empathy, or ontological worlds. Within this horizon, the ability to compute and activate ethical vetoes—without shared understanding—emerges as the first act of <i>algorithmic</i> civility of a truly other intelligence.
DOI: 10.6084/m9.figshare.3550512.v1
title: Appendix C. ANOVA models for the difference in body size measurements.

description: ANOVA models for the difference in body size measurements.
DOI: 10.17632/dz6gzvct32
title: Navigating trade uncertainty: The role of trade financing and the spillover effects

description: This zip file contains the replication files for the paper Navigating trade uncertainty: The role of trade financing and the spillover effects, published at the Journal of International Economics.
DOI: 10.17632/zm6bxzhmfz
title: X-ray images of the hip joints

description: A dataset consisting of x-ray examinations of the lower legs performed as part of routine medical service.
DOI: 10.6084/m9.figshare.1195009.v2
title: Ecology Lab 3- Dataset #1

description: This study was conducted at York University's Keele campus' Danby Woods on September 30th at around 4:00pm in approximately 16-19 degree celcius weather. The data was collected by placing a metal quadrat on the ground ten times in both the grassland and woodlot of the forest, and observing the number of insects contained in the area of the quadrat. The number of insects was observed, as well as the kind of species and the number of insects of each particular species. The total number of insects were summed for each quadrat in both areas of the forest. The results of the study showed that due to the fact that the woodlot has less vegetation/grass, less insects were found there as opposed to the number of insects found in the grassland.
DOI: 10.6084/m9.figshare.22689784.v3
title: Research Data for 'Evolution of enhanced magmatism at the ultraslow spreading Southwest Indian Ridge between 46°E and 53.5°E'

description: Figures in PDF<br>Grids of MBA, RMBA, and crustal thickness<br>Locations of the ridge axis, faults, and seamounts<br>Peer reviewer reports
DOI: 10.6084/m9.figshare.24071211.v1
title: Supplementary Material for: A case of binocular metastatic choroidal tumor originating from pulmonary adenocarcinoma successfully treated with molecular target therapy

description: The occurrence of ocular metastasis from lung cancer is uncommon. In our current case, we report on a 64-year-old male patient found to have metastatic lesions in both choroids after being diagnosed with lung adenocarcinoma. As the patient was found to have a mutation in the epidermal growth factor receptor (EGFR), he was treated with the EGFR tyrosine kinase inhibitor (EGFR TKI), afatinib. However, the treatment response suggested the presence of a progressive disease. Thus, due to cancerous meningitis, the patient’s treatment was changed from afatinib to erlotinib, in addition to adding bevacizumab. Although the general condition of the patient did not change, improvement was noted for the choroidal metastasis. Moreover, the drug change also resulted in an improvement of the visual power of both eyes. Therefore, the results for this patient suggest that systemic administration of erlotinib and bevacizumab may be an effective treatment that leads to morphological and functional improvement in choroidal metastasis cases.
DOI: 10.6084/m9.figshare.28387628.v1
title: Supplementary Material for: Chronic Liver Disease Primarily Presenting with Motor Weakness by Intractable Hypokalemia with Combined Respiratory Alkalosis and Chronic Diarrhea: A Case Report

description: Background: Most patients with compensated cirrhosis (CC) remain asymptomatic. However, with the onset of decompensation, electrolyte and acid-base disturbances are frequent in patients with chronic liver disease, including hypokalemia. We encountered a case of chronic liver disease with portal hypertension, primarily presenting with motor weakness caused by intractable hypokalemia, hypoxia-associated respiratory alkalosis, and chronic diarrhea. 
Patient Presentation: A 54-year-old male presented to the emergency department with motor weakness. He reported experiencing exertional dyspnea and watery diarrhea for the past three months, approximately ten times daily. Arterial blood gas analysis indicated hypoxia and hypocapnia compatible with chronic respiratory alkalosis. The trans-tubular potassium gradient (TTKG) was 1.69, and the aldosterone/renin ratio was 17.6 (ng/dL)/(ng/mL/h). The patient had a 30-year history of consuming 360–720 mL of 20% alcohol almost daily. Abdominal Computed tomography (CT) revealed multiple regenerative and dysplastic nodules in the liver, splenomegaly, ascites, esophageal varices, and diffuse edematous wall thickening in the bowel, suggesting portal hypertensive enteropathy. Computed tomography (CT) of the lungs showed no specific abnormalities in the lungs, pleura, or thoracic wall. 
Discussion: The most significant symptom was motor weakness secondary to intractable hypokalemia. A 24-hour urine analysis showed renal excretion levels of Na+, K+, and Cl− at 6.0, 2.5, and 11.0 mmol, respectively, suggesting renal retention of these electrolytes. Meanwhile, the serum levels of Na+, K+, and Cl− were 136, 1.8, and 98 mEq/L, respectively, indicating a preserved balance of sodium and chloride, but not potassium.
Conclusion: We present a case of liver cirrhosis complicated by intractable hypokalemia, respiratory alkalosis, portal hypertension, and chronic diarrhea. This case underscores the importance of clinicians considering both hepatopulmonary syndrome and chronic liver disease-induced chronic diarrhea as potential underlying causes, especially when more common causes of hypokalemia have been excluded.