cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14045798
title: Pretreatment Glasgow prognostic score as a predictor of outcomes in nivolumabtreated patients with advanced gastric cancer

description: In Japan, South Korea, and Taiwan, nivolumab might provide overall survival benefits for patients with advanced gastric cancer. However, it is effective only in a limited number of patients. The Glasgow prognostic score is an indicator of the systematic inflammatory response and nutritional status. This study aimed to investigate the ability of the Glasgow prognostic score and other markers to predict the outcomes of patients treated with nivolumab. We reviewed the medical records of patients treated for advanced gastric cancer and who received nivolumab between February 2015 and June 2019 at Hyogo Cancer Center. The patients were categorized into two groups according to their Glasgow prognostic scores. Overall, 53.3% and 46.7% of the patients were assigned to groups with Glasgow prognostic scores of 0 and 1/2, respectively. The median durations of progression-free and overall survival of the participants were 2.3 and 5.7 months, respectively. The patients with a Glasgow prognostic score of 0 had significantly higher median overall survival than those with scores of 1 or 2 (16.4 vs. 4.2 months; p = 0.0006). This observation suggests that a pretreatment Glasgow prognostic score of 0 is associated with better outcomes, and this scoring system may be used as a predictor of outcomes in patients with advanced gastric cancer treated with nivolumab.
DOI: 10.6084/m9.figshare.14045798.v1
title: Pretreatment Glasgow prognostic score as a predictor of outcomes in nivolumabtreated patients with advanced gastric cancer

description: In Japan, South Korea, and Taiwan, nivolumab might provide overall survival benefits for patients with advanced gastric cancer. However, it is effective only in a limited number of patients. The Glasgow prognostic score is an indicator of the systematic inflammatory response and nutritional status. This study aimed to investigate the ability of the Glasgow prognostic score and other markers to predict the outcomes of patients treated with nivolumab. We reviewed the medical records of patients treated for advanced gastric cancer and who received nivolumab between February 2015 and June 2019 at Hyogo Cancer Center. The patients were categorized into two groups according to their Glasgow prognostic scores. Overall, 53.3% and 46.7% of the patients were assigned to groups with Glasgow prognostic scores of 0 and 1/2, respectively. The median durations of progression-free and overall survival of the participants were 2.3 and 5.7 months, respectively. The patients with a Glasgow prognostic score of 0 had significantly higher median overall survival than those with scores of 1 or 2 (16.4 vs. 4.2 months; p = 0.0006). This observation suggests that a pretreatment Glasgow prognostic score of 0 is associated with better outcomes, and this scoring system may be used as a predictor of outcomes in patients with advanced gastric cancer treated with nivolumab.
DOI: 10.20351/29he20130304
title: DETSUFA Cruise, RV Hespérides

description: DETSUFA Cruise (29HE20130304) carried out on the Research Vessel Hespérides in 2013
DOI: 10.5281/zenodo.4544529
title: Training data for MaxQuant and Msstats label-free analysis in Galaxy

description: The files serve as input and intermediate results for a MaxQuant and Msstats training on skin cancer tissues (https://doi.org/10.1016/j.matbio.2017.11.004) in the Galaxy training network (https://training.galaxyproject.org). Input files: human FASTA database for Maxquant. Annotation file and comparison matrix file for Msstats. Intermediate result files: MaxQuant protein groups, evidence and PTXQC.
DOI: 10.6084/m9.figshare.14045786
title: Supplementary Material for: Serum and Tissue Levels of Advanced Glycation End Products and Risk of Mortality in Patients on Maintenance Hemodialysis

description: <b><i>Background:</i></b> The relation of tissue and circulating advanced glycation end products (AGEs) with mortality in hemodialysis (HD) patients remains inconclusive. We aimed to investigate the association of serum AGEs (CML) and tissue AGEs estimated by skin autofluorescence (SAF) with all-cause and cardiovascular disease (CVD) mortality, and examine the possible modifiers for the association in HD patients with by far the largest sample size in any similar studies. <b><i>Methods:</i></b> A total of 1,634 HD patients were included from the China Cooperative Study on Dialysis (CCSD), a multicenter prospective cohort study. The primary and secondary outcomes were all-cause mortality and CVD mortality, respectively. <b><i>Results:</i></b> The median follow-up duration was 5.2 years. Overall, there was a positive relation of baseline SAF levels with the risk of all-cause mortality (per 1 AU increment, adjusted hazard ratio (HR), 1.30; 95% confidence interval (CI): 1.12, 1.50) and CVD mortality (per 1 AU increment, adjusted HR, 1.36; 95% CI: 1.14, 1.62). Moreover, a stronger positive association between baseline SAF (per 1 AU increment) and all-cause mortality was found in participants with shorter dialysis vintage, or lower C-reactive protein levels (Both <i>p</i> interactions &lt;0.05). Nevertheless, there was no significant association between serum CML and the risk of mortality. <b><i>Conclusions:</i></b> In patients undergoing long-term HD, baseline SAF, but not serum CML, was significantly associated with the risk of all-cause and CVD death.
DOI: 10.6084/m9.figshare.14045786.v1
title: Supplementary Material for: Serum and Tissue Levels of Advanced Glycation End Products and Risk of Mortality in Patients on Maintenance Hemodialysis

description: <b><i>Background:</i></b> The relation of tissue and circulating advanced glycation end products (AGEs) with mortality in hemodialysis (HD) patients remains inconclusive. We aimed to investigate the association of serum AGEs (CML) and tissue AGEs estimated by skin autofluorescence (SAF) with all-cause and cardiovascular disease (CVD) mortality, and examine the possible modifiers for the association in HD patients with by far the largest sample size in any similar studies. <b><i>Methods:</i></b> A total of 1,634 HD patients were included from the China Cooperative Study on Dialysis (CCSD), a multicenter prospective cohort study. The primary and secondary outcomes were all-cause mortality and CVD mortality, respectively. <b><i>Results:</i></b> The median follow-up duration was 5.2 years. Overall, there was a positive relation of baseline SAF levels with the risk of all-cause mortality (per 1 AU increment, adjusted hazard ratio (HR), 1.30; 95% confidence interval (CI): 1.12, 1.50) and CVD mortality (per 1 AU increment, adjusted HR, 1.36; 95% CI: 1.14, 1.62). Moreover, a stronger positive association between baseline SAF (per 1 AU increment) and all-cause mortality was found in participants with shorter dialysis vintage, or lower C-reactive protein levels (Both <i>p</i> interactions &lt;0.05). Nevertheless, there was no significant association between serum CML and the risk of mortality. <b><i>Conclusions:</i></b> In patients undergoing long-term HD, baseline SAF, but not serum CML, was significantly associated with the risk of all-cause and CVD death.
DOI: 10.25919/dkgs-1335
title: Parkes observations for project P1092 semester 2020OCTS_10

description: We propose to use the Parkes UWL receiver for confirmation and monitoring a sub-set of bright FAST-discovered pulsars, especially for those discoveries located outside the sky regions covered by the purchased PX-500 project. For special FAST discoveries that already confirmed by Parkes, such as MSPs or pulsars with interesting emission properties, we propose to do long-term monitoring for them as well. These monitoring aim to solve their parameters, binary orbit, and provide significant insight into the special emission properties of these new discoveries and facilitate science. The Parkes UWL system provides a unique capability for studying the pulsars over wide bandwidths, in term of both the timing precision and frequency-dependent observing properties.
DOI: 10.20351/29sg20140601
title: PLOCAN Cruise, RV Sarmiento de Gamboa

description: PLOCAN Cruise (29SG20140601) carried out on the Research Vessel Sarmiento de Gamboa in 2014
DOI: 10.5281/zenodo.4543482
title: Scanning X-band rainfall radar data for Machine Learning nowcast

description: The dataset presents a training set of rainfall files, used to develop a Long Short-Term Memory (LSTM) rainfall forecast. The format of input files is in NetCDF, packed as daily files for September 2020. The project where files have been used was in a pilot experiment (DEvelopment of a NOWcasting Machine-Learning module for X-band and C-band weather-radars (DeNOW) ) within Fed4FIRE+, in the end of year 2020.
DOI: 10.5281/zenodo.4543481
title: Scanning X-band rainfall radar data for Machine Learning nowcast

description: The dataset presents a training set of rainfall files, used to develop a Long Short-Term Memory (LSTM) rainfall forecast. The format of input files is in NetCDF, packed as daily files for September 2020. The project where files have been used was in a pilot experiment (DEvelopment of a NOWcasting Machine-Learning module for X-band and C-band weather-radars (DeNOW) ) within Fed4FIRE+, in the end of year 2020.
DOI: 10.20351/29sg20140625
title: MED-SUV Cruise, RV Sarmiento de Gamboa

description: MED-SUV Cruise (29SG20140625) carried out on the Research Vessel Sarmiento de Gamboa in 2014
DOI: 10.17632/mh8k5npkvn.1
title: Application of corrected perfusion parameters derived from simplified IVIM in estimating perfusion of hypervascular brain tumor

description: the original data of 45 inpatients
DOI: 10.17632/bz3rj4rcy7.1
title: LINF_090015700

description: translation-associated element 2; Leishmania infantum
DOI: 10.17632/b6vkxd3ymj.1
title: LINF_090016000

description: elongation factor-1 gamma (EF1G); Leishmania infantum
DOI: 10.17632/84r584byy2.1
title: LINF_090015800

description: O-phosphoseryl-tRNA(Sec) selenium transferase; Leishmania infantum
DOI: 10.17632/f5kvgpvrkp.1
title: Tidal-induced temporal variations in growth of young-of-the-year Pacific cod in the Yellow Sea

description: Data of otolith daily increment measurement and corresponding data from ADCP
DOI: 10.17632/bbsm8tjgjy.1
title: picFoam: An OpenFOAM based electrostatic Particle-in-Cell solver

description: picFoam is a fully kinetic electrostatic Particle-in-Cell (PIC) solver, including Monte Carlo Collisions (MCC), for non-equilibrium plasma research in the open-source framework of OpenFOAM. The solver’s modular design, based on the same principles used in OpenFOAM, makes it highly flexible, by allowing the user to choose different methods at run time, and extendable, by building upon templated modular classes. The implementation of the PIC method employing the finite volume method, allows it to simulate on arbitrary geometries in one to three dimensions. OpenFOAM’s barycentric particle tracking is used effectively to perform charge and field weighting from the Lagrangian particle based description to the Eulerian field description and backwards without computational expensive particle searching algorithm. picFoam also includes open and general circuit boundary models for the description of real plasma devices.
DOI: 10.17632/htrvwm7k2h.1
title: GUI4dft — A SIESTA oriented GUI

description: The Graphical User Interface for Density Functional Theory (GUI4dft) is a new software for users of SIESTA. It is a free cross-platform software with a graphical user interface. GUI4dft allows the user to work with standard SIESTA files and prepare manuscript-quality figures of the atomic structure and properties such as three-dimensional charge density distributions, DOS, PDOS, and band structure. GUI4dft is written in Python language and falls under an MIT license.
DOI: 10.20351/29he20141020
title: TRANSPEGASO Cruise, RV Hespérides

description: TRANSPEGASO Cruise (29HE20141020) carried out on the Research Vessel Hespérides in 2014
DOI: 10.17632/2k6btpbswn.1
title: Data for: OUR CALENDAR STOPPED! THE ORGANIZACIONAL CHANGE AT UFPB DUE TO COVID-19 published by RAC-Revista de Administração Contemporânea

description: O arquivo contém o resultado do levantamento sobre o perfil discente em relação ao acesso a Internet e a tecnologias remotas realizado pelo Observatório de Dados da Graduação (ODG) na Universidade Federal da Paraíba (UFPB). Nele é possível verificar a descrição da amostra, bem como diversos gráficos que mostram o perfil discente. Esse levantamento foi realizado para subsidiar as discussões e decisões para o período suplementar remoto na UFPB. The file contains the survey result on the student profile about Internet access and remote technologies carried out by the Undergraduate Data Observatory (ODG) at the Federal University of Paraíba (UFPB). It is possible to check the description of the sample and several graphs that show the student profile. This survey was carried out to substantiate discussions and decisions for the remote supplementary period at UFPB.
DOI: 10.17632/ypck7kw694.1
title: Surface water plastics in the Eastern Arctic
DOI: 10.17632/jxn4rghdw3.1
title: Model for the mediating role of mental health in the relationship between burnout and psychosocial factors

description: As burnout increased, psychosocial risks increased and mental health decreased. However, the direct effect of mental health on psychosocial factors was not statistically significant.
DOI: 10.17632/nvzrft8c7d.1
title: Tensile and compressive load datasets for additive manufacturing PLA lattices

description: This data-set was collected as part of the experimental characterization of 3d-printed Polylactic acid (PLA) lattice structures. The dataset is stored as three Excel spreadsheets .xlsx, one for each load case: compressive, tension A type, and tension B type. The dataset consists of the measurements taken by an MTS Bionix 370 testing machine in a compressive and tensile load of different lattice structures, architecture, and density. Each spreadsheet name codes the type, density value, and replica number of the specimen being tested with the following code: INFILL TYPE LETTER (H, T OR S) -DENSITY VALUE (As a percentage) - Replicate identification. e.i H65C represents the specimen "c" of a hexagonal infill with 65% density. In each experimental point, the complete timed values of the sensors were recorded: force, displacement, time, and the extensometer displacement measurement. The calculated variables such as stress and strain are also shown based on the specimen dimensions available in each sheet. This dataset is part of research on the mechanical properties of different infill lattices and will be published in the journal article "Tensile and compressive behavior of additive manufacturing polylactic acid lattice infill patterns".
DOI: 10.17632/2mdrpb93wp.1
title: Supplemental Tables for the Manuscript : Effect of an intramammary lipopolysaccharide challenge on the hindgut microbial composition and fermentation of dairy cattle experiencing intermittent subacute ruminal acidosis
DOI: 10.17632/4b8v2dvh94.1
title: Local steroid treatment and surgery

description: We share the raw data of our study named as "Local Steroid Treatment: An Effective Procedure for Idiopathic Granulomatous Mastitis, Including Complicated Cases". Our study aimed to evaluate the effectiveness of local steroid treatment (LST) for idiopathic granulomatous mastitis (IGM) and to compare with surgical methods. The most likely hypothesis is that IGM is an autoinflammatory disease. Based on this hypothesis and the results of our study, suppressing inflammation in patients with IGM rather than resection was found to be more effective and acceptable. Data of the study was retrospectively collected from hospital electronic records and patient follow-up forms. Clinical characteristics of patients, pain scores during treatment proscesses, changes in lesion sizes, costs of the treatments and results of LST are included in file in excel formats.
DOI: 10.17632/5y562jh4tx.2
title: Velem: Supplementary Material 3

description: This supplementary material is part of the 'Non-destructive Analysis of a Late Bronze Age Hoard from the Velem-Szent Vid Hillfort' article submitted to Journal of Archaeological Sciences in 2020. Supplementary Material 3: LBA spearhead elemental composition (Carpathian Basin). Author: János Gábor Tarbay, Co-authors: Boglárka Maróti, Zoltán Kis, György Káli, László Szentmiklósi.
DOI: 10.17632/7xty7prgwd.1
title: LINF_090016100

description: hypothetical protein - conserved; Leishmania infantum
DOI: 10.17632/7m4mbm2742.1
title: LINF_090016050

description: elongation factor-1 gamma (EF1G); Leishmania infantum
DOI: 10.5281/zenodo.4544876
title: Impact of metals on (star)dust chemistry: a laboratory astrophysics approach

description: The files contain the infrared spectra published in the article "Impact of metals on (star)dust chemistry: a laboratory astrophysics approach", Frontiers, 2021, R. Bérard, K. Makasheva, K. Demyk, A. Simon, D. Nuez Reyes, F. Mastrorocco, H. Sabbah, C. Joblin, submitted All files are .txt files and contain two columns:<br> First column = wavenumber in cm-1<br> Second column = absorbance (A = log10(T) with T the transmittance) See the readme_berard2021.txt for the description of the files
DOI: 10.5281/zenodo.4544875
title: Impact of metals on (star)dust chemistry: a laboratory astrophysics approach

description: The files contain the infrared spectra published in the article "Impact of metals on (star)dust chemistry: a laboratory astrophysics approach", Frontiers, 2021, R. Bérard, K. Makasheva, K. Demyk, A. Simon, D. Nuez Reyes, F. Mastrorocco, H. Sabbah, C. Joblin, submitted All files are .txt files and contain two columns:<br> First column = wavenumber in cm-1<br> Second column = absorbance (A = log10(T) with T the transmittance) See the readme_berard2021.txt for the description of the files
DOI: 10.17632/2jfw8zrwcw.1
title: Stress resilience and hippocampal synaptoprotection

description: This dataset is related to our research article published in Neuroscience: Huzian et al., Stress resilience is associated with hippocampal synaptoprotection in the female rat learned helplessness paradigm Neuroscience (2021), https://doi.org/10.1016/j.neuroscience.2021.01.029
DOI: 10.17632/d2pr838xv5.1
title: Descriptive data on trichloroethylene and Congo red dye adsorption from wastewater using bio nanosponge phosphorylated-carbon nanotube/nanoparticles polyurethane composite.

description: The availability and quality of water resources is currently the primary concern in Southern Africa. The challenge is to improve or develop water treatment materials or methods to solve this problem of potable water scarcity. Hence, this article presents the analyzed data, which are supplementary data information on the study of bio nanosponge phosphorylated-carbon nanotube/nanoparticles polyurethane composite (pMWCNT/β-CD/TiO2-Ag) as polymeric nanobiosorbent, for water treatment. The developed polymeric nanobiosorbent (pMWCNT/β-CD/TiO2-Ag) was synthesized using combined methods of amidation reaction, cross polymerization, and sol-gel process. The removal of water pollutants (trichloroethylene (TCE) and Congo red (CR) dye) was conducted by the batch adsorption method. The conditions used during the adsorption experiments and methods (applied to quantify the water samples after adsorption studies) are described. Additional data obtained on the effect of pH, isotherm, kinetic, and thermodynamic studies are also illustrated
DOI: 10.20351/29sg20140427
title: HOTMIX Cruise, RV Sarmiento de Gamboa

description: HOTMIX Cruise (29SG20140427) carried out on the Research Vessel Sarmiento de Gamboa in 2014
DOI: 10.5281/zenodo.4545019
title: A LAMOST BHB Catalog and Kinematics Therein I: Catalog and Halo Properties

description: A catalog of BHB stars constructed from LAMOST spectroscopy.
DOI: 10.17632/vmg9jp4hgc.1
title: Test-retest reliability of brain activation induced by robotic passive hand movement synchronized with a Video game: A randomized crossover functional NIRS study

description: Test-retest reliability (TRR) of brain activation, the likelihood that a certain brain area is repeatedly activated, is deeply related to brain plasticity, the basic paradigm of rehabilitation. In this study, we opted for a video game (VG) to promote TRR of robotic passive hand movement (RPHM), since our previous study has shown that RPHM has a low TRR. The two elements of VG, proprioception and real-time reaction, which we believe contribute to the interesting and immersive nature of VG, thereby enhancing the user engagement, a potent cause of contrasting TRR between the active and passive movements. To combine the VG with the RPHM, the pre-recorded video of VG is synchronized with the RPHM. The 40 subjects are being offered both RPHM and RPHM+VG, according to the crossover design, corresponding brain activations are measured by using fNIRS. Subsequently, TRR indices and the results of statistical analysis of crossover design are used to evaluate TRR. As a result, the introduction of VG to RPHM has shown enhanced activation in the primary sensorimotor area and premotor cortex as well as increasing TRR in those regions compared to RPHM. Current results suggest that RPHM with VG surpasses passive movement and is similar to active movement in terms of functional elements and the region of activation. Also, it can be inferred that VG is an appropriate modality of increasing TRR by enhancing user engagement when combined with passive movement. The 40 subjects were equally divided into and randomly assigned to two groups, Group A and Group B. The overall experiments take three months: one month for Period 1, followed by another month as a washout period, and still another month for Period 2. At the beginning and end of each period, a respective session of the experiment is conducted to determine the activation, and TRR is evaluated after the end-period session. The one month period was selected out of our previous research on TRR of brain activity. It is a part of the crossover design for one group to experiment RPHM and RPHM+VG in an order reverse to the other group does: While Group A carried out RPHM+VG in Period 1 (session1 and session2) before RPHM in Period 2 (session3 and session4), Group B RPHM in Period 1 before RPHM + VG in Period 2. There are two types of uploaded data as follows: first the relative changes in concentration of oxygenated hemoglobin, deoxygenated hemoglobin, and total hemoglobin; second, 3d coordinates of anatomical landmark and the placement of optodes. The file name is written in 5 characters consisted of one letter and four digits according to a set of rules. The first character is 'A' or 'B' which means the name of the group. And consecutive second and third digits means subject's number. The forth digit stands for the nubmer of sessions. The fifth digit refers to the kind of data that can be 0 or 1, the former refers to the 3d coordinates optodes and the latter refers to the the measured hemoglobin data.
DOI: 10.5281/zenodo.4545018
title: A LAMOST BHB Catalog and Kinematics Therein I: Catalog and Halo Properties

description: A catalog of BHB stars constructed from LAMOST spectroscopy.
DOI: 10.17632/y9mgyw9r59.1
title: Hammond et al. 2021
DOI: 10.5281/zenodo.4544527
title: Data set for "Is the H4 histone tail intrinsically disordered or intrinsically multifunctional?"

description: Data set for "Is the H4 histone tail intrinsically disordered or intrinsically multifunctional?" Contains energy landscape databases and some analysis scripts README file in archive details usage. To use the computational energy landscape framework PATHSAMPLE developed and maintained by Prof David Wales, Cambridge is needed (http://www-wales.ch.cam.ac.uk/PATHSAMPLE/) To extract structures in mdcrd format, compile and use fortran script in archive.