cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hc449q
title: Occurrence Download

description: A dataset containing 3709 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Línea base general de mamíferos para el valle medio del Magdalena - VMM"
 ]
}

 The dataset includes 3709 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004099-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18112/openneuro.ds007169.v1.0.4
title: Cognitive Workload n-back
DOI: 10.5061/dryad.b5mkkwhnq
title: Data from: Glial ferritin maintains neural stem cells via transporting iron required for self-renewal in Drosophila

description: Stem cell niche is critical for regulating the behavior of stem cells.
 Drosophila neural stem cells (Neuroblasts, NBs) are encased by glial niche
 cells closely, but it still remains unclear whether glial niche cells can
 regulate the self-renewal and differentiation of NBs. Here we show that
 ferritin produced by glia, cooperates with Zip13 to transport iron into
 NBs for the energy production, which is essential to the self-renewal and
 proliferation of NBs. The knockdown of glial ferritin encoding genes
 causes energy shortage in NBs via downregulating aconitase activity and
 NAD+ level, which leads to the low proliferation and premature
 differentiation of NBs mediated by Prospero entering nuclei. More
 importantly, ferritin is a potential target for tumor suppression. In
 addition, the level of glial ferritin production is affected by the status
 of NBs, establishing a bicellular iron homeostasis. In this study, we
 demonstrate that glial cells are indispensable to maintain the
 self-renewal of NBs, unveiling a novel role of the NB glial niche during
 brain development.
description: This dataset contains experimental data from a study aimed at
 investigating the neural stem cell function. The data includes
 measurements of NB number and proliferation under different experimental
 conditions. The results of this study are discussed in detail in our
 relevant publication. 
description: # Glial ferritin maintains neural stem cells via transporting iron
 required for self-renewal in Drosophila
 [https://doi.org/10.5061/dryad.b5mkkwhnq](https://doi.org/10.5061/dryad.b5mkkwhnq) ## Description of the data and file structure This dataset contains experimental data from a study aimed at investigating the neural stem cell function. The data includes measurements of neural stem cell number and proliferation, knockdown efficiency of ferritin, ferritin expression, ROS accumulation, ATP content, aconitase activity, NAD+ level, tumor size, and so on. ### Files and variables #### File: Source\_Data.zip **Description:** The Source_Data.zip supports Figures 1, 2, 3, 4, 5, 6, 7, Figure 1-Figure supplement 1,3, Figure 3-Figure supplement 1-3, Figure 4-figure supplement 1, Figure 5-figure supplement 1-3, Figure 6-figure supplement 1. WB file contains original western blot results in Figure1F and 1H, Figure7A and 7B. RT-PCR file contains original DNA electrophoresis result in Figure 1D. ## Access information Other publicly accessible locations of the data: * n/a Data was derived from the following sources: * n/a
DOI: 10.5061/dryad.6t1g1jx78
title: Navigated ultrasound bronchoscopy with integrated positron emission tomography - A human feasibility study

description: Patients suspected to have lung cancer undergo endobronchial ultrasound
 bronchoscopy (EBUS) for the purpose of diagnosis and staging. For
 presumptive curable patients, the EBUS bronchoscopy is planned based on
 images and data from computed tomography (CT) images and positron emission
 tomography (PET). Our study aimed to evaluate the feasibility of a
 multimodal electromagnetic (EM) navigation platform for EBUS bronchoscopy,
 integrating ultrasound and segmented CT, and PET scan imaging data. This
 proof-of-concept study included patients with suspected lung cancer
 identified on both CT and PET scans. Images obtained from these two
 modalities were segmented to delineate target lymph nodes and then
 incorporated into the CustusX navigation platform. The EBUS bronchoscope
 was equipped with a 3D printed click-on device with an integrated EM
 sensor at the tip. Navigation accuracy was measured postoperatively using
 ultrasound recordings. The study enrolled three patients, all presenting
 with suspected mediastinal lymph node metastasis (N1-3). All PET-positive
 lymph nodes were displayed in the navigation platform during the EBUS
 procedures. In total, five distinct lymph nodes were sampled, yielding
 malignant cells from three nodes and lymphocytes from the remaining two.
 The median accuracy of the navigation system was 7.7 mm. Our study
 introduced a feasible multimodal electromagnetic navigation platform that
 combines intraoperative ultrasound with preoperative segmented CT and PET
 imaging data for EBUS lymph node staging examinations. This innovative
 approach holds promise for enhancing the accuracy and effectiveness of
 EBUS procedures.
description: # Navigated ultrasound bronchoscopy with integrated positron emission
 tomography - A human feasibility study
 [https://doi.org/10.5061/dryad.6t1g1jx78](https://doi.org/10.5061/dryad.6t1g1jx78) ## Description of the data and file structure The dataset contains thorax computed tomography (CT), positron emission tomography (PET), and ultrasound data from 3 patients undergoing endobronchial ultrasound bronchoscopy (EBUS) with transbronchial needle aspirations (TBNA).  The PET data is registered (non-linear) to the CT data. Ultrasound data is aligned to the corresponding position of CT data using electromagnetic tracking (EMT). ### Files and variables CT: Thorax computed tomography (CT), .mhd/.raw format PET: Positron emission tomography (PET) registered to CT, .mhd/.raw format Ultrasound: Ultrasound data of lymph nodes, .mhd/.zraw format (.mhd files can be transferred to another format (i.e., .nii) in Python using ReadImage/WriteImage in SimpleITK)
DOI: 10.15468/dl.cuvurf
title: Occurrence Download

description: A dataset containing 181 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Conorhynchos conirostris"
 ]
}

 The dataset includes 181 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004100-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.4j0zpc8mz
title: Studies of Vietnamese pteridophyte flora 3

description: Based on recent collections, we reported three new national records of
 ferns for Vietnam: Haplopteris yakushimensis, Lindsaea kohkongensis, and
 Pteris pseudowulaiensis. We conducted phylogenetic analyses to investigate
 the placements of Lindsaea kohkongensis and Leptochilus poilanei, each
 based on three plastid DNA markers. Our results revealed that Lindsaea
 kohkongensis is sister to L. ensifolia, while Leptochilus poilanei is
 embedded within L. cantoniensis. We discussed these results in the context
 of systematics. Lastly, we reported chromosome numbers for 20 fern species
 in Vietnam. For seven of these species, including Gymnosphaera salletii,
 Lepisorus spicatus, Leptochilus poilanei, Pteridrys costularis, Pteris
 latipinna, Pyrrosia eberhardtii, and Tectaria setulosa, these counts were
 recorded for the first time. Additionally, three new cytotypes were
 identified for Diplazium doederleinii, Pteris esquirolii, and Tectaria
 harlandii.
description: # Studies of Vietnamese Pteridophyte Flora 3
 [https://doi.org/10.5061/dryad.4j0zpc8mz](https://doi.org/10.5061/dryad.4j0zpc8mz) ## Description of the data and file structure The two concatenated alignments (in nexus format) and the resulting phylogenetic trees generated by maximum likelihood (ML) analyses using IQTREE. ### Files and variables #### File: Lindsaea\_3\_reigons\_concatenated.nex **Description:** Three chloroplast markers including *matK*, *trnH*-*psbA*, and *trnL*-*F.* #### File: Leptochilus\_3\_regions\_concatenated.nex **Description:** Three chloroplast markers including *rbcL*, *rps4-trnS*, and *trnL-F.* #### File: Leptochilus\_ML\_tree.treefile **Description:** ML phylogeny generated by IQTREE. #### File: Lindsaea\_ML\_tree.treefile **Description:** ML phylogeny generated by IQTREE.
DOI: 10.5061/dryad.1c59zw452
title: Data from: Analysis of chloroplast genomes of ten Central Asian Fritillaria species and their phylogenetic relationships

description: Fritillaria is a taxonomically complex genus of Liliaceae that contains
 many important ornamental and medicinal species. In this study, we
 sequenced the chloroplast genomes of ten Fritillaria species distributed
 in Central Asia and compared them to previously sequenced Fritillaria cp
 genomes. Comparison of 36 Fritillaria species’ cp genomes identified as
 useful potential molecular markers due to their high level of divergence
 three coding regions and 11 intergenic spacers. Effective single sequence
 repeats (SSRs) for population genetic studies of Fritillaria were also
 identified. Phylogenetic analysis showed that two recently described
 species, F. baisunensis and F. rugillosa belong to subg. Rhinopetalum, and
 that the membership of F. ussuriensis and F. meleagroides in subg.
 Fritillaria should be revised. These two species and F. camschatsencese
 currently assigned to subg. Liliorhiza, should be members of the same
 taxonomic unit. Subg. Liliorhiza, although a small group, is more
 complicated that it was previously thought, and apparently comprises
 species too distant to be in one subgenus. F. maximowischii, currently
 assigned to subg. Liliorhiza should be treated as a new subgenus.
description: # Analysis of chloroplast genomes of ten Central Asian *Fritillaria*
 species and their phylogenetic relationships
 [https://doi.org/10.5061/dryad.1c59zw452](https://doi.org/10.5061/dryad.1c59zw452) ## Description of the data and file structure Dataset and Supplementary materials for the manuscript id NJB-04413 ### Files and variables #### File: fasta\_alignment\_\_data\_for\_Raxml.fas **Description:**  protein coding sequence of Fritillaria species  for ML (Raxml)  phylogenetic tree #### File: ITS\_data.nex **Description:** Nuclear data (ITS sequence) for Phylogenetic tree #### File: data\_for\_BAYES **Description:** Protein coding sequence of Fritillaria species of Fritillaria species for BI (MrBayes) phylogenetic tree #### File: data\_for\_PAUP **Description:** Protein coding sequence of Fritillaria species for MP (PAUP) phylogenetic tree
DOI: 10.5061/dryad.gb5mkkx08
title: Nanoplastics rewire freshwater food webs

description: The accelerating use of plastics worldwide is of societal concern,
 especially as plastics fragment into smaller, micro- and nano-sized
 particles. Of particular importance is the effects on aquatic ecosystems
 since a major part of the nanoplastics eventually reach natural water
 systems. We identify, using replicated experimental wetlands, a tipping
 point where nanoplastics become detrimental to the key planktonic grazer,
 Daphnia. Moreover, the phytoplankton diatoms were also strongly affected
 by nanoplastics, whereas we detected no effects on the less efficient
 herbivore copepods, cyanobacteria, benthic bacterial decomposition, or any
 bottom dwelling organisms. That some organisms and ecosystem functions,
 but not others, are strongly affected by nanoplastic particles predicts
 considerable alterations in aquatic food webs and a rewiring of feeding
 links. In a broader context, our study provides crucial data on the
 effects of nanoplastics in semi-natural, complex ecosystems, constituting
 urgently needed understanding for risk assessment, legislation, and
 management of plastic material.
description: A long-term, large -scale freshwater mesocosm set-up was exposed
 to a gradient of nanoplastics. Organisms, inlcuding pelagic (zoo- and
 phytoplankton) and benthic organisms, as well as ecosystem functions were
 assessed.
description: # Nanoplastics rewire freshwater food webs
 [https://doi.org/10.5061/dryad.gb5mkkx08](https://doi.org/10.5061/dryad.gb5mkkx08) ## Description of the data and file structure ### Files and variables #### File: Fig1dryad.xlsx **Description:** Number of animal per mesocosm Number of Daphnia and cyclopoid copepods (#/mesocosm; columns) in mesocosms at the end of the study. Rows show numbers in each mesocosm and treatment. C is control mesocsms without nanoplastics, whereas L, M and H denotes low (21 µg/L), medium (214 µg/L) and high (2141 µg/L) concentrations of nanoplastics. #### File: Fig2dryad.xlsx **Description:** Biomass of phytoplankton Algal biomass (µg/L; columns) in mesocosms at the end of the study (week #10). Rows show biomasses in each mesocosm and treatment. C is control mesocsms without nanoplastics, whereas L, M and H denotes low (21 µg/L), medium (214 µg/L) and high (2141 µg/L) concentrations of nanoplastics. #### File: Fig3Dryad.xlsx **Description:** Decomposition of leaves Decomposition of leaves during 10 weeks in in mesocosms. Rows show data for each mesocosm and treatment. C is control mesocsms without nanoplastics, whereas L, M and H denotes low (21 µg/L), medium (214 µg/L) and high (2141 µg/L) concentrations of nanoplastics. Columns are the initial weight (in gram) of the leaves, tube tare weight, tube with leaf, and calculated final leaf weight. Decomposition was then calculated by subtracting initial from final leaf weight (g). ## Access information Other publicly accessible locations of the data: * Not applicable Data was derived from the following sources: * Not applicable
DOI: 10.15468/dl.9hau9h
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Norway",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is December",
 "OccurrenceStatus is Present",
 "TaxonKey is Megaptera novaeangliae",
 "Year 2024-2024"
 ]
}

 The dataset includes 53 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004101-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uqdezq
title: Occurrence Download

description: A dataset containing 763260 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "DatasetKey is EOD – eBird Observation Dataset",
 "IucnRedListCategory is one of (VU, EN, CR)",
 "OccurrenceStatus is Present",
 "Year 2016-2026"
 ]
}

 The dataset includes 763260 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004088-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.c59zw3rhm
title: Associations between Lantana camara L. (Verbenaceae) and common native species in an African savanna

description: Lantana camara L. (Verbenaceae) is recognised as a problematic invasive
 alien plant species in many parts of the world. To eradicate or control
 this global invader, we need to understand the drivers of its spread and
 impacts and the potential for native recovery after the invader has been
 removed. Here, we tested for species associations between L. camara and
 native plant species and large herbivores in Queen Elizabeth National
 Park, Uganda. We inventoried 40 100-m2 nested plots spread over a 1 × 1-km
 grid cell in the park’s savanna landscape, with 11 plots located in
 uninvaded areas. Most of the plots (30 of 40) had been affected by
 fire.  Lantana camara covered 29 (73%) plots, 11 (38%) of which
 were in open grassland. Of the large herbivores that frequented areas free
 of L. camara, the Ugandan kob Adenota kob thomasi Sclater tended to avoid
 the areas invaded. The floristic composition of invaded areas differed
 significantly from that of noninvaded areas, with several palatable
 species rare or absent from L. camara-invaded areas.  Practical
 implication: These observations indicate the presence of potential
 recovery constraints that will need to be overcome after L.
 camara has been removed. Sustained efforts will be needed to suppress the
 invader and subsequently enrich and bolster native recovery.
description: # Associations between Lantana camara L. (Verbenaceae) and common native
 species in an African savanna
 [https://doi.org/10.5061/dryad.c59zw3rhm](https://doi.org/10.5061/dryad.c59zw3rhm) ## Description of the data and file structure We inventoried 40 100-m2 nested plots spread over a 1 × 1-km grid cell in Queen Elizabeth National Park, Uganda. Each nested plot comprised one 10 × 10-m plot, one 5 × 5-m plot and one 1 × 1-m plot, with the smaller plots located at the centre of the main plot. The invasion of *Lantana camara* was evaluated in 10 × 10-m plots and classified into two classes using the 75th percentile as a threshold: 'uninvaded' (*Lantana* density = 0) and 'invaded' (*Lantana* density ≥ 0.25 stems m-2). ### Files and variables #### File: Ssali\_et\_al.\_Lantana\_camara\_data\_for\_archiving\_Ecological\_Solutions\_and\_Evidence\_August\_2024.xlsx **Description:** The file contains two spreadsheets: the first shows floristic data (graminoid, for, and woody plant species per plot) while the second displays the presence/absence data for large herbivores recorded in *Lantana camara* invaded and uninvaded areas.  ##### Variables * Relative abundance of *L. camara* versus vegetation type and burning regime * Occurrence of large herbivores in *L. camara* invaded and uninvaded areas ## Code/software To determine whether floristic composition varies between invaded and uninvaded areas, we summarised, plotted, and analysed the data using R (R Core Team, 2020). Code is not provided. ## Access information Other publicly accessible locations of the data: * N/A Data was derived from the following sources: * N/A
DOI: 10.6084/m9.figshare.31144996
title: Sequential_conflict_data

description: To capture realistic driving operations and drivers’ behavioral responses to different intervention strategies, a human-in-the-loop experiment was conducted using a six-degree-of-freedom (6-DOF) driving simulator. The platform enables precise control of traffic scenarios, interacting road users, and intervention strategies while preserving the continuity of natural driving operations. High-resolution trajectories of multiple agents and detailed driving behavior data can be synchronously recorded.The experiment involves 30 drivers and 8 scenarios, and evaluates multiple intervention configurations, including offline, online and their combinations.
DOI: 10.6084/m9.figshare.31144996.v1
title: TRC_sequential_conflict_data

description: To capture realistic driving operations and drivers’ behavioral responses to different intervention strategies, a human-in-the-loop experiment was conducted using a six-degree-of-freedom (6-DOF) driving simulator. The platform enables precise control of traffic scenarios, interacting road users, and intervention strategies while preserving the continuity of natural driving operations. High-resolution trajectories of multiple agents and detailed driving behavior data can be synchronously recorded.The experiment involves 30 drivers and 8 scenarios, and evaluates multiple intervention configurations, including offline, online and their combinations.
DOI: 10.6084/m9.figshare.31144996.v2
title: Sequential_conflict_data

description: To capture realistic driving operations and drivers’ behavioral responses to different intervention strategies, a human-in-the-loop experiment was conducted using a six-degree-of-freedom (6-DOF) driving simulator. The platform enables precise control of traffic scenarios, interacting road users, and intervention strategies while preserving the continuity of natural driving operations. High-resolution trajectories of multiple agents and detailed driving behavior data can be synchronously recorded.The experiment involves 30 drivers and 8 scenarios, and evaluates multiple intervention configurations, including offline, online and their combinations.
DOI: 10.15468/dl.4qu2y7
title: Occurrence Download

description: A dataset containing 15379 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "CollectionKey is one of (7e54e286-4cf1-48d6-8d83-3b1a95c99c31)",
 "StateProvince is one of (Santander)"
 ]
 }
 ]
}

 The dataset includes 15379 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004102-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21223/p3/katpz8
title: Dataset for: Participatory Varietal Selection of 11 late blight resistant clones (B1C5) in the localities of Alacoto, Chuquitambo and Macullida in La Libertad, Peru

description: The Mother and Baby (M&B) trial methodology was adapted by CIP for Participatory Variety Selection (PVS) through decentralized evaluation networks and multi-year evaluations in potato growing areas in the Andean region. The M&B trial design encourages active participation of farmers through the application of treatments through systematic evaluations and selections of treatments in their own plots called "Baby trials" (i.e. farmer managed trials) and in fields with an experimental design called "Mother trials" (i.e. researcher managed trials). Objective: Analyze characteristics, attributes and preferences that men and women have when selecting a new potato variety at the phase of flowering and harvesting. A M&B trial was performed to evaluate 11 clones of the population B1C5 with late blight resistance at the localities of Alacoto, Chuquitambo and Macullida, in the provinces of Pataz and Sanchez Carrion, in La Libertad department, Peru. The trial design was a Randomized Complete Block Design (RCBD) with 3 replicates for Mother trials and 3 replicates for Baby trials during 2012-2013. In this experiment characteristics of plant (size, type of foliage), yield, quality, and pest and disease resistance during flowering and harvesting were evaluated. The number of participants at flowering phase was 20 (men=14 and women=6), 12 (men=5, women = 5), 9 (men=4, women = 5); and the number of participants at harvesting phase was 17 (men=12 and women=5), 12 (men=5, women = 5) and 9 (men=4, women = 5) in Alacoto, Chuquitambo and Macullida respectively. Additionally, an organoleptic evaluation was assessed at harvesting to evaluate appearance, taste and texture. The number of panelists was 10 (men=5, women=5) in Alacoto, Chuquitambo respectively and 10 (men=4, women=6) in Macullida for the organoleptic evaluation.
DOI: 10.15468/dl.n4sggc
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Norway",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is December",
 "OccurrenceStatus is Present",
 "TaxonKey is Megaptera novaeangliae",
 "Year 2015-2015"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004103-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.