cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11296790
title: MOESM6 of Systematic comparison of hUC-MSCs at various passages reveals the variations of signatures and therapeutic effect on acute graft-versus-host disease

description: Additional file 6. The whole exome sequencing data of hUC-MSCs (P3, P6, P15) from three individuals were listed.
DOI: 10.6084/m9.figshare.11296790.v1
title: MOESM6 of Systematic comparison of hUC-MSCs at various passages reveals the variations of signatures and therapeutic effect on acute graft-versus-host disease

description: Additional file 6. The whole exome sequencing data of hUC-MSCs (P3, P6, P15) from three individuals were listed.
DOI: 10.6084/m9.figshare.21256857.v1
title: Additional file 2 of Inconsistency analysis between metagenomic next-generation sequencing results of cerebrospinal fluid and clinical diagnosis with suspected central nervous system infection

description: Additional file 2: Comparison of the etiological results between conventional detection methods and next-generation sequencing technology.
DOI: 10.6084/m9.figshare.21256857
title: Additional file 2 of Inconsistency analysis between metagenomic next-generation sequencing results of cerebrospinal fluid and clinical diagnosis with suspected central nervous system infection

description: Additional file 2: Comparison of the etiological results between conventional detection methods and next-generation sequencing technology.
DOI: 10.6084/m9.figshare.9724067
title: Mutations and phenotypic characteristics in transient and permanent congenital hypothyroidism: an analysis of literature data.docx

description: Supplemental data of study: Mutations
and phenotypic characteristics in transient and permanent congenital hypothyroidism:
an analysis of literature data
DOI: 10.6084/m9.figshare.10248368
title: Differential Expressions of microRNAs and Transfer RNA-derived Small RNAs: Potential Targets of Choroidal Neovascularization

description: <b>Purpose</b>: Choroidal neovascularization (CNV) is one of the major clinical characteristics of neovascular age-related macular degeneration (AMD). Small non-coding RNAs, such as microRNAs (miRNAs) and transfer RNA-derived small RNAs (tsRNAs) play key roles in diverse biological functions. The purpose of the study was to investigate the roles and possible functions of the miRNAs and tsRNAs in CNV. <b>Methods</b>: The mouse model of laser-induced CNV was conducted by laser photocoagulation. The expression profiles of miRNAs and tsRNAs were accessed by small RNA sequencing (RNA-Seq) in RPE-choroid-sclera complexes of mice in CNV group and control group. Selected altered miRNAs and tsRNAs were validated by qRT-PCR. Target genes were predicted by informatics analysis and intersected with the previous microarray study of altered mRNAs. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were conducted to reveal the biological functions and signaling pathways with which these target genes are most enriched. <b>Results</b>: The results revealed that 79 miRNAs and 72 tsRNAs in total were significantly altered in the RPE-choroid-sclera complexes of CNV mice. GO analysis revealed that the altered target genes of the selected miRNAs most enriched in immune response, integral component of membrane and peptide binding, while the altered target genes of tsRNAs most enriched in regulation of immune system process, extracellular region, and core promoter binding. Moreover, KEGG pathway analysis demonstrated that altered target genes of miRNAs and tsRNAs most enriched in hematopoietic cell lineage and nucleotide-binding oligomerization domain (NOD)-like receptor signaling pathway, respectively. <b>Conclusions</b>: Our study identified differential expressions of miRNAs and tsRNAs in CNV model, and these altered miRNAs and tsRNAs might be novel potential targets in treating CNVs in patients with neovascular AMD.
DOI: 10.6084/m9.figshare.17064129
title: Fairness-Oriented Learning for Optimal Individualized Treatment Rules

description: There has recently been a surge on the methodological development for optimal individualized treatment rule (ITR) estimation. The standard methods in the literature are designed to maximize the potential average performance (assuming larger outcomes are desirable). A notable drawback of the standard approach, due to heterogeneity in treatment response, is that the estimated optimal ITR may be suboptimal or even detrimental to certain disadvantaged subpopulations. Motivated by the importance of incorporating an appropriate fairness constraint in optimal decision making (e.g., assign treatment with protection to those with shorter survival time, or assign a job training program with protection to those with lower wages), we propose a new framework that aims to estimate an optimal ITR to maximize the average value with the guarantee that its tail performance exceeds a prespecified threshold. The optimal fairness-oriented ITR corresponds to a solution of a nonconvex optimization problem. To handle the computational challenge, we develop a new efficient first-order algorithm. We establish theoretical guarantees for the proposed estimator. Furthermore, we extend the proposed method to dynamic optimal ITRs. The advantages of the proposed approach over existing methods are demonstrated via extensive numerical studies and real data analysis.
DOI: 10.6084/m9.figshare.21781150
title: The effects of calcium fertilization on morphological and physio-biochemical characteristics in peanut seedlings under waterlogging stress

description: Peanut is vulnerable under waterlogging stress, and it is important to explore efficient agronomic practices to reduce adverse effects induced by waterlogging stress. In this study, the effects of waterlogging stress on plant morphology, physiological and biochemical characters in peanut seedlings were studied. It was founded waterlogging stress posted adverse effects on plant growth and development and triggered the activities of antioxidant enzymes and osmotic adjustment substances to improve the plant tolerance under stress. It was also found that exogenous calcium fertilization could significantly improved root growth and development under stress. Moreover, higher dose of calcium fertilizer (1600 mg/kg) showed better performance on improving waterlogging tolerance than lower dose one (800 mg/kg) in peanut seedlings. This study explored positive effects of exogenous calcium on recovering damages especially in roots caused by waterlogging stress, providing a theoretical guidance in agronomic practice to improve waterlogging tolerance, and laying a foundation for agronomic practice when further discovering molecular mechanisms in response to waterlogging stress.
DOI: 10.6084/m9.figshare.21256930
title: Additional file 9 of Identification of SSBP1 as a ferroptosis-related biomarker of glioblastoma based on a novel mitochondria-related gene risk model and in vitro experiments

description: Additional file 9: Table S4. The 21 prognositc DE-MRGs based on the TCGA GBM cohort.
DOI: 10.6084/m9.figshare.21256930.v1
title: Additional file 9 of Identification of SSBP1 as a ferroptosis-related biomarker of glioblastoma based on a novel mitochondria-related gene risk model and in vitro experiments

description: Additional file 9: Table S4. The 21 prognositc DE-MRGs based on the TCGA GBM cohort.
DOI: 10.6084/m9.figshare.21256918.v1
title: Additional file 6 of Identification of SSBP1 as a ferroptosis-related biomarker of glioblastoma based on a novel mitochondria-related gene risk model and in vitro experiments

description: Additional file 6: Table S1. The mitochondria-related genes extracted from the uniprot database.
DOI: 10.6084/m9.figshare.11297162
title: MOESM1 of Rapid genomic DNA variation in newly hybridized carp lineages derived from Cyprinus carpio (♀) × Megalobrama amblycephala (♂)

description: Additional file 1: Table S1. The 12 combinations of degenerate PCR primers designed based on the alignment and identification of consensus sequences of orthologous Hox genes from zebrafish (Danio rerio), medaka (Oryzias latipes), rainbow trout (Oncorhynchus mykiss), pufferfish (Fugu rubripes), mouse (Mus musculus), and humans (Homo sapiens). Table S2. Sequence information and GenBank accession numbers for COC, BSB, IDC-F1, IDMC-F1, IDC-F2-C, IDC-F2-M, and IDMC-F2 clones, and GenBank accession numbers of zebrafish (Danio rerio) used in this study; the tick symbol means the suquence used in this analysis.
DOI: 10.6084/m9.figshare.11297162.v1
title: MOESM1 of Rapid genomic DNA variation in newly hybridized carp lineages derived from Cyprinus carpio (♀) × Megalobrama amblycephala (♂)

description: Additional file 1: Table S1. The 12 combinations of degenerate PCR primers designed based on the alignment and identification of consensus sequences of orthologous Hox genes from zebrafish (Danio rerio), medaka (Oryzias latipes), rainbow trout (Oncorhynchus mykiss), pufferfish (Fugu rubripes), mouse (Mus musculus), and humans (Homo sapiens). Table S2. Sequence information and GenBank accession numbers for COC, BSB, IDC-F1, IDMC-F1, IDC-F2-C, IDC-F2-M, and IDMC-F2 clones, and GenBank accession numbers of zebrafish (Danio rerio) used in this study; the tick symbol means the suquence used in this analysis.
DOI: 10.6084/m9.figshare.21256927.v1
title: Additional file 8 of Identification of SSBP1 as a ferroptosis-related biomarker of glioblastoma based on a novel mitochondria-related gene risk model and in vitro experiments

description: Additional file 8: Table S3. The 201 DE-MRGs between neoplatstic and non-neoplastic cells.
DOI: 10.17188/1202521
title: Materials Data on Zn(Bi3O5)4 by Materials Project

description: ZnBi12O20 crystallizes in the cubic I23 space group. The structure is three-dimensional. Zn2+ is bonded to four equivalent O2- atoms to form ZnO4 tetrahedra that share corners with twelve equivalent BiO5 square pyramids. All Zn–O bond lengths are 2.03 Å. Bi+3.17+ is bonded to five O2- atoms to form distorted BiO5 square pyramids that share corners with eight equivalent BiO5 square pyramids, a cornercorner with one ZnO4 tetrahedra, and an edgeedge with one BiO5 square pyramid. There are a spread of Bi–O bond distances ranging from 2.11–2.56 Å. There are three inequivalent O2- sites. In the first O2- site, O2- is bonded to one Zn2+ and three equivalent Bi+3.17+ atoms to form corner-sharing OZnBi3 tetrahedra. In the second O2- site, O2- is bonded in a trigonal planar geometry to three equivalent Bi+3.17+ atoms. In the third O2- site, O2- is bonded in a distorted trigonal non-coplanar geometry to three equivalent Bi+3.17+ atoms.
DOI: 10.17188/1202522
title: Materials Data on S(ClO)2 by Materials Project

description: SO2Cl2 is gamma plutonium structured and crystallizes in the orthorhombic Fdd2 space group. The structure is zero-dimensional and consists of eight sulfuryl chloride molecules. S6+ is bonded in a distorted tetrahedral geometry to two equivalent O2- and two equivalent Cl1- atoms. Both S–O bond lengths are 1.43 Å. Both S–Cl bond lengths are 2.03 Å. O2- is bonded in a single-bond geometry to one S6+ atom. Cl1- is bonded in a single-bond geometry to one S6+ atom.
DOI: 10.17188/1202523
title: Materials Data on SCl2O by Materials Project

description: SOCl2 is Ammonia-derived structured and crystallizes in the monoclinic P2_1/c space group. The structure is zero-dimensional and consists of four thionyl chloride molecules. S4+ is bonded in a trigonal non-coplanar geometry to one O2- and two equivalent Cl1- atoms. The S–O bond length is 1.45 Å. There are one shorter (2.10 Å) and one longer (2.11 Å) S–Cl bond lengths. O2- is bonded in a single-bond geometry to one S4+ atom. Cl1- is bonded in a single-bond geometry to one S4+ atom.
DOI: 10.17188/1202524
title: Materials Data on SBr2O by Materials Project

description: SOBr2 crystallizes in the orthorhombic Pca2_1 space group. The structure is zero-dimensional and consists of eight thionyl bromide molecules. S2- is bonded in a distorted single-bond geometry to one O2- and two Br2+ atoms. The S–O bond length is 1.46 Å. There are one shorter (2.28 Å) and one longer (2.31 Å) S–Br bond lengths. O2- is bonded in a single-bond geometry to one S2- atom. There are two inequivalent Br2+ sites. In the first Br2+ site, Br2+ is bonded in a single-bond geometry to one S2- atom. In the second Br2+ site, Br2+ is bonded in a single-bond geometry to one S2- atom.
DOI: 10.17188/1202525
title: Materials Data on KTcCl3 by Materials Project

description: KTcCl3 crystallizes in the monoclinic Cc space group. The structure is three-dimensional. there are two inequivalent K1+ sites. In the first K1+ site, K1+ is bonded in a 8-coordinate geometry to eight Cl1- atoms. There are a spread of K–Cl bond distances ranging from 3.12–3.70 Å. In the second K1+ site, K1+ is bonded in a 6-coordinate geometry to eight Cl1- atoms. There are a spread of K–Cl bond distances ranging from 3.15–3.87 Å. There are two inequivalent Tc2+ sites. In the first Tc2+ site, Tc2+ is bonded in a 4-coordinate geometry to one Tc2+ and four Cl1- atoms. The Tc–Tc bond length is 2.10 Å. There are a spread of Tc–Cl bond distances ranging from 2.40–2.45 Å. In the second Tc2+ site, Tc2+ is bonded in a 4-coordinate geometry to one Tc2+ and four Cl1- atoms. There are a spread of Tc–Cl bond distances ranging from 2.40–2.44 Å. There are six inequivalent Cl1- sites. In the first Cl1- site, Cl1- is bonded in a 3-coordinate geometry to two K1+ and one Tc2+ atom. In the second Cl1- site, Cl1- is bonded in a 3-coordinate geometry to two K1+ and one Tc2+ atom. In the third Cl1- site, Cl1- is bonded in a 1-coordinate geometry to four K1+ and one Tc2+ atom. In the fourth Cl1- site, Cl1- is bonded in a 3-coordinate geometry to two K1+ and two Tc2+ atoms. In the fifth Cl1- site, Cl1- is bonded in a 2-coordinate geometry to two K1+ and two Tc2+ atoms. In the sixth Cl1- site, Cl1- is bonded in a 1-coordinate geometry to four K1+ and one Tc2+ atom.
DOI: 10.17188/1202526
title: Materials Data on ScSi2 by Materials Project

description: ScSi2 is hexagonal omega structure structured and crystallizes in the hexagonal P6/mmm space group. The structure is three-dimensional. Sc is bonded to twelve equivalent Si atoms to form a mixture of edge and face-sharing ScSi12 cuboctahedra. All Sc–Si bond lengths are 2.95 Å. Si is bonded in a 9-coordinate geometry to six equivalent Sc and three equivalent Si atoms. All Si–Si bond lengths are 2.33 Å.
DOI: 10.17188/1202527
title: Materials Data on ThP7 by Materials Project

description: ThP7 crystallizes in the orthorhombic P2_12_12_1 space group. The structure is three-dimensional. Th4+ is bonded in a 10-coordinate geometry to ten P+0.57- atoms. There are a spread of Th–P bond distances ranging from 2.94–3.20 Å. There are seven inequivalent P+0.57- sites. In the first P+0.57- site, P+0.57- is bonded in a 5-coordinate geometry to one Th4+ and two P+0.57- atoms. There are one shorter (2.23 Å) and one longer (2.26 Å) P–P bond lengths. In the second P+0.57- site, P+0.57- is bonded to two equivalent Th4+ and two P+0.57- atoms to form distorted PTh2P2 trigonal pyramids that share corners with seven PThP3 tetrahedra, corners with five PTh2P2 trigonal pyramids, an edgeedge with one PThP3 tetrahedra, and an edgeedge with one PTh2P2 trigonal pyramid. There are one shorter (2.20 Å) and one longer (2.26 Å) P–P bond lengths. In the third P+0.57- site, P+0.57- is bonded to one Th4+ and three P+0.57- atoms to form PThP3 tetrahedra that share corners with five PThP3 tetrahedra and corners with four PTh2P2 trigonal pyramids. The P–P bond length is 2.22 Å. In the fourth P+0.57- site, P+0.57- is bonded in a 3-coordinate geometry to one Th4+ and two P+0.57- atoms. The P–P bond length is 2.23 Å. In the fifth P+0.57- site, P+0.57- is bonded to two equivalent Th4+ and two P+0.57- atoms to form distorted PTh2P2 trigonal pyramids that share corners with seven PThP3 tetrahedra, corners with five PTh2P2 trigonal pyramids, an edgeedge with one PTh2P2 tetrahedra, and an edgeedge with one PTh2P2 trigonal pyramid. The P–P bond length is 2.22 Å. In the sixth P+0.57- site, P+0.57- is bonded to one Th4+ and three P+0.57- atoms to form PThP3 tetrahedra that share corners with four PThP3 tetrahedra, corners with three PTh2P2 trigonal pyramids, and an edgeedge with one PTh2P2 trigonal pyramid. The P–P bond length is 2.24 Å. In the seventh P+0.57- site, P+0.57- is bonded to two equivalent Th4+ and two P+0.57- atoms to form PTh2P2 tetrahedra that share corners with seven PThP3 tetrahedra, corners with seven PTh2P2 trigonal pyramids, and an edgeedge with one PTh2P2 trigonal pyramid.
DOI: 10.17188/1202528
title: Materials Data on Ho2Ni12P7 by Materials Project

description: Ho2Ni12P7 crystallizes in the hexagonal P-6 space group. The structure is three-dimensional. there are two inequivalent Ho3+ sites. In the first Ho3+ site, Ho3+ is bonded to six equivalent P3- atoms to form distorted HoP6 pentagonal pyramids that share corners with six equivalent NiP5 square pyramids, corners with twelve NiP4 tetrahedra, edges with twelve NiP4 tetrahedra, and faces with two equivalent HoP6 pentagonal pyramids. All Ho–P bond lengths are 2.87 Å. In the second Ho3+ site, Ho3+ is bonded to six equivalent P3- atoms to form distorted HoP6 pentagonal pyramids that share corners with six equivalent NiP5 square pyramids, corners with twelve NiP4 tetrahedra, edges with three equivalent NiP5 square pyramids, edges with nine NiP4 tetrahedra, and faces with two equivalent HoP6 pentagonal pyramids. All Ho–P bond lengths are 2.85 Å. There are four inequivalent Ni+1.25+ sites. In the first Ni+1.25+ site, Ni+1.25+ is bonded to four P3- atoms to form NiP4 tetrahedra that share corners with two equivalent HoP6 pentagonal pyramids, corners with four equivalent NiP5 square pyramids, corners with ten NiP4 tetrahedra, edges with three HoP6 pentagonal pyramids, an edgeedge with one NiP5 square pyramid, and edges with four NiP4 tetrahedra. There are a spread of Ni–P bond distances ranging from 2.25–2.34 Å. In the second Ni+1.25+ site, Ni+1.25+ is bonded to four P3- atoms to form NiP4 tetrahedra that share corners with four HoP6 pentagonal pyramids, corners with two equivalent NiP5 square pyramids, corners with ten NiP4 tetrahedra, an edgeedge with one HoP6 pentagonal pyramid, edges with four equivalent NiP5 square pyramids, and edges with three NiP4 tetrahedra. There are a spread of Ni–P bond distances ranging from 2.15–2.31 Å. In the third Ni+1.25+ site, Ni+1.25+ is bonded to five P3- atoms to form distorted NiP5 square pyramids that share corners with four HoP6 pentagonal pyramids, corners with four equivalent NiP5 square pyramids, corners with eight NiP4 tetrahedra, an edgeedge with one HoP6 pentagonal pyramid, edges with four equivalent NiP5 square pyramids, and edges with seven NiP4 tetrahedra. There are a spread of Ni–P bond distances ranging from 2.29–2.56 Å. In the fourth Ni+1.25+ site, Ni+1.25+ is bonded to four P3- atoms to form NiP4 tetrahedra that share corners with two equivalent HoP6 pentagonal pyramids, corners with two equivalent NiP5 square pyramids, corners with twelve NiP4 tetrahedra, edges with three HoP6 pentagonal pyramids, edges with two equivalent NiP5 square pyramids, and edges with three NiP4 tetrahedra. There are a spread of Ni–P bond distances ranging from 2.23–2.33 Å. There are three inequivalent P3- sites. In the first P3- site, P3- is bonded in a 3-coordinate geometry to nine Ni+1.25+ atoms. In the second P3- site, P3- is bonded in a 9-coordinate geometry to two equivalent Ho3+ and seven Ni+1.25+ atoms. In the third P3- site, P3- is bonded in a 9-coordinate geometry to two equivalent Ho3+ and seven Ni+1.25+ atoms.
DOI: 10.17188/1202529
title: Materials Data on Na2(GaSb)3 by Materials Project

description: Na2(GaSb)3 crystallizes in the orthorhombic Pnma space group. The structure is three-dimensional. there are two inequivalent Na1+ sites. In the first Na1+ site, Na1+ is bonded to six Sb3- atoms to form NaSb6 octahedra that share corners with four equivalent NaSb5 square pyramids, corners with three equivalent GaSb4 tetrahedra, edges with six equivalent NaSb6 octahedra, an edgeedge with one NaSb5 square pyramid, and edges with three equivalent GaSb4 tetrahedra. There are a spread of Na–Sb bond distances ranging from 3.27–3.50 Å. In the second Na1+ site, Na1+ is bonded to five Sb3- atoms to form distorted NaSb5 square pyramids that share corners with four equivalent NaSb6 octahedra, corners with four equivalent NaSb5 square pyramids, corners with four equivalent GaSb4 tetrahedra, an edgeedge with one NaSb6 octahedra, edges with two equivalent NaSb5 square pyramids, and a faceface with one GaSb4 tetrahedra. The corner-sharing octahedra tilt angles range from 36–41°. There are two shorter (3.43 Å) and three longer (3.49 Å) Na–Sb bond lengths. There are three inequivalent Ga+2.33+ sites. In the first Ga+2.33+ site, Ga+2.33+ is bonded in a trigonal non-coplanar geometry to three Sb3- atoms. There are two shorter (2.71 Å) and one longer (2.75 Å) Ga–Sb bond lengths. In the second Ga+2.33+ site, Ga+2.33+ is bonded in a trigonal non-coplanar geometry to three equivalent Sb3- atoms. There are two shorter (2.75 Å) and one longer (2.84 Å) Ga–Sb bond lengths. In the third Ga+2.33+ site, Ga+2.33+ is bonded to four Sb3- atoms to form GaSb4 tetrahedra that share corners with three equivalent NaSb6 octahedra, corners with four equivalent NaSb5 square pyramids, corners with two equivalent GaSb4 tetrahedra, edges with three equivalent NaSb6 octahedra, and a faceface with one NaSb5 square pyramid. The corner-sharing octahedra tilt angles range from 3–29°. There are a spread of Ga–Sb bond distances ranging from 2.67–2.76 Å. There are three inequivalent Sb3- sites. In the first Sb3- site, Sb3- is bonded in a 7-coordinate geometry to three equivalent Na1+ and four Ga+2.33+ atoms. In the second Sb3- site, Sb3- is bonded in a 8-coordinate geometry to five Na1+ and three Ga+2.33+ atoms. In the third Sb3- site, Sb3- is bonded to three equivalent Na1+ and three Ga+2.33+ atoms to form edge-sharing SbNa3Ga3 octahedra.
DOI: 10.17188/1202530
title: Materials Data on Nd2GeO5 by Materials Project

description: Nd2GeO5 crystallizes in the monoclinic P2_1/c space group. The structure is three-dimensional. there are two inequivalent Nd3+ sites. In the first Nd3+ site, Nd3+ is bonded in a 7-coordinate geometry to seven O2- atoms. There are a spread of Nd–O bond distances ranging from 2.40–2.70 Å. In the second Nd3+ site, Nd3+ is bonded in a 8-coordinate geometry to eight O2- atoms. There are a spread of Nd–O bond distances ranging from 2.35–2.62 Å. Ge4+ is bonded in a distorted T-shaped geometry to three O2- atoms. There are a spread of Ge–O bond distances ranging from 1.86–2.01 Å. There are five inequivalent O2- sites. In the first O2- site, O2- is bonded to four Nd3+ atoms to form ONd4 tetrahedra that share corners with five ONd4 tetrahedra and edges with three ONd3Ge tetrahedra. In the second O2- site, O2- is bonded in a 4-coordinate geometry to three equivalent Nd3+ and one O2- atom. The O–O bond length is 1.54 Å. In the third O2- site, O2- is bonded in a 4-coordinate geometry to three equivalent Nd3+ and one Ge4+ atom. In the fourth O2- site, O2- is bonded to three Nd3+ and one Ge4+ atom to form a mixture of distorted edge and corner-sharing ONd3Ge tetrahedra. In the fifth O2- site, O2- is bonded in a 1-coordinate geometry to two equivalent Nd3+, one Ge4+, and one O2- atom.