cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10282958
title: Data-set: The economic cost of losing native pollinator species for orchard production

description: 1. The alarming loss of pollinator diversity worldwide can reduce the productivity of pollinator-dependent crops, entailing potential economic impacts. However, it is unclear to what extent the loss of a key native pollinator species affects crop production and farmer's profits.2. By experimentally manipulating the presence of colonies of honey bees and a native bumble bee species (<i>Bombus pauloensis</i>) in eight apple orchards in South Argentina, we evaluate the impact of losing natural populations of a key native pollinator group on <i>i</i>) crop yield, <i>ii</i>) pollination quality, and <i>iii</i>) farmer’s profit. To do so, we performed a factorial experiment of pollinator exclusion (yes/no) and hand pollination (yes/no).3. Our results showed that biotic pollination increased ripe fruit-set by 13 % when compared to non-biotic pollination. Additionally, fruit-set and the number of fruits per apple tree was reduced by less than a half in those orchards where bumble bees were absent, even when honey bees were present at high densities. Consequently, farmer’s profit was 2.4-fold lower in farms lacking bumble bees than in farms hosting both pollinator species. The pollination experiment further suggested that the benefits of bumble bees could be mediated by improved pollen quality rather than quantity.4. <i>Synthesis and applications</i>: Our findings highlight the pervasive consequences of losing key pollinator functional groups, such as bumble bees, for apple production and local economies. Adopting pollinator-friendly practices such as minimizing the use of synthetic inputs or restoring/maintaining semi-natural habitats at farm and landscape scales, will have the double advantage of promoting biodiversity conservation, and increasing crop productivity and profitability for local farmers. Yet because the implementation of these practices can take time to deliver results, the management of native pollinator species can be a provisional complementary strategy to increase economic profitability of apple growers in the short term.
DOI: 10.6084/m9.figshare.10282922
title: Metadata record for: Growth phase proteomics of the heterotrophic marine bacterium Ruegeria pomeroyi

description: This dataset contains key characteristics about the data described in the Data Descriptor Growth phase proteomics of the heterotrophic marine bacterium Ruegeria pomeroyi. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.10282922.v2
title: Metadata record for: Growth phase proteomics of the heterotrophic marine bacterium Ruegeria pomeroyi

description: This dataset contains key characteristics about the data described in the Data Descriptor Growth phase proteomics of the heterotrophic marine bacterium Ruegeria pomeroyi. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.10282922.v1
title: Metadata record for: Growth phase proteomics of the heterotrophic marine bacterium Ruegeria pomeroyi

description: This dataset contains key characteristics about the data described in the Data Descriptor Growth phase proteomics of the heterotrophic marine bacterium Ruegeria pomeroyi. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.10282958.v1
title: Data-set: The economic cost of losing native pollinator species for orchard production

description: 1. The alarming loss of pollinator diversity worldwide can reduce the productivity of pollinator-dependent crops, entailing potential economic impacts. However, it is unclear to what extent the loss of a key native pollinator species affects crop production and farmer's profits.2. By experimentally manipulating the presence of colonies of honey bees and a native bumble bee species (<i>Bombus pauloensis</i>) in eight apple orchards in South Argentina, we evaluate the impact of losing natural populations of a key native pollinator group on <i>i</i>) crop yield, <i>ii</i>) pollination quality, and <i>iii</i>) farmer’s profit. To do so, we performed a factorial experiment of pollinator exclusion (yes/no) and hand pollination (yes/no).3. Our results showed that biotic pollination increased ripe fruit-set by 13 % when compared to non-biotic pollination. Additionally, fruit-set and the number of fruits per apple tree was reduced by less than a half in those orchards where bumble bees were absent, even when honey bees were present at high densities. Consequently, farmer’s profit was 2.4-fold lower in farms lacking bumble bees than in farms hosting both pollinator species. The pollination experiment further suggested that the benefits of bumble bees could be mediated by improved pollen quality rather than quantity.4. <i>Synthesis and applications</i>: Our findings highlight the pervasive consequences of losing key pollinator functional groups, such as bumble bees, for apple production and local economies. Adopting pollinator-friendly practices such as minimizing the use of synthetic inputs or restoring/maintaining semi-natural habitats at farm and landscape scales, will have the double advantage of promoting biodiversity conservation, and increasing crop productivity and profitability for local farmers. Yet because the implementation of these practices can take time to deliver results, the management of native pollinator species can be a provisional complementary strategy to increase economic profitability of apple growers in the short term.
DOI: 10.6084/m9.figshare.10282859
title: rabv_minionSeqConsensus.fasta

description: Rabies virus consensus sequences from amplicon-based MinION sequencing of brain tissue samples from rabid animals. Submitted in paper: Rapid in-country sequencing of whole virus genomes to inform rabies elimination programmes (Brunker et al, 2019)
DOI: 10.6084/m9.figshare.10282859.v1
title: rabv_minionSeqConsensus.fasta

description: Rabies virus consensus sequences from amplicon-based MinION sequencing of brain tissue samples from rabid animals. Submitted in paper: Rapid in-country sequencing of whole virus genomes to inform rabies elimination programmes (Brunker et al, 2019)
DOI: 10.6084/m9.figshare.10282838
title: Mallorca Island Tour

description: Mallorcaislandtourguide is the tour blog post website where you can take Mallorca island tour ideas to experience and enjoy the location by having different kinds of facilities like adventure, boat tour, Spanish modern and kinds of seafood, etc. These locations also are photographers’ paradise with recent stone villages and recent olive trees on the wayside.
DOI: 10.6084/m9.figshare.10282838.v1
title: Mallorca Island Tour

description: Mallorcaislandtourguide is the tour blog post website where you can take Mallorca island tour ideas to experience and enjoy the location by having different kinds of facilities like adventure, boat tour, Spanish modern and kinds of seafood, etc. These locations also are photographers’ paradise with recent stone villages and recent olive trees on the wayside.
DOI: 10.6084/m9.figshare.10282766
title: History of traumatic brain injury interferes with accurate diagnosis of Alzheimer’s dementia: a nation-wide case-control study

description: Traumatic brain injury (TBI) and Alzheimer’s disease (AD) bear a complex relationship, potentially increasing risk of one another reciprocally. However, recent evidence suggests post-TBI dementia exists as a distinct neurodegenerative syndrome, confounding AD diagnostic accuracy in clinical settings. This investigation sought to evaluate TBI’s impact on the accuracy of clinician-diagnosed AD using gold standard neuropathological criteria. In this preliminary analysis, data were acquired from the National Alzheimer’s Coordinating Centre (NACC), which aggregates clinical and neuropathologic information from Alzheimer’s disease centres across the United States. Modified National Institute on Aging-Reagan criteria were applied to confirm AD by neuropathology. Among participants with clinician-diagnosed AD, TBI history was associated with misdiagnosis (false positives) (OR = 1.351 [95% CI: 1.091–1.674], <i>p</i> = 0.006). Among participants without clinician-diagnosed AD, TBI history was not associated with false negatives. TBI moderates AD diagnostic accuracy. Possible AD misdiagnosis can mislead patients, influence treatment decisions, and confound research study designs. Further work examining the influence of TBI on dementia diagnosis is warranted.
DOI: 10.6084/m9.figshare.10282724
title: Mesocosms_data

description: These are the results of a mesocosm experiment with artificial plant communities that was held at the botanical gardens in Jerusalem, Israel.More data can be found in: https://www.pnas.org/content/early/2020/02/14/1911540117<br><br>
DOI: 10.6084/m9.figshare.10282718
title: curated_adipo_descriptor

description: Processed data used to generate figures and tables in the manuscript "Modeling the gene expression and the DNA-binding in the 3T3-L1 differentiating adipocytes." <br>
DOI: 10.6084/m9.figshare.10282691
title: Detection of Mycoplasma genitalium using Direct PCR

description: Detection of <i>Mycoplasma genitalium </i>using direct PCR. The information shared shows the 352 swab samples used in this study.
DOI: 10.6084/m9.figshare.10282766.v1
title: History of traumatic brain injury interferes with accurate diagnosis of Alzheimer’s dementia: a nation-wide case-control study

description: Traumatic brain injury (TBI) and Alzheimer’s disease (AD) bear a complex relationship, potentially increasing risk of one another reciprocally. However, recent evidence suggests post-TBI dementia exists as a distinct neurodegenerative syndrome, confounding AD diagnostic accuracy in clinical settings. This investigation sought to evaluate TBI’s impact on the accuracy of clinician-diagnosed AD using gold standard neuropathological criteria. In this preliminary analysis, data were acquired from the National Alzheimer’s Coordinating Centre (NACC), which aggregates clinical and neuropathologic information from Alzheimer’s disease centres across the United States. Modified National Institute on Aging-Reagan criteria were applied to confirm AD by neuropathology. Among participants with clinician-diagnosed AD, TBI history was associated with misdiagnosis (false positives) (OR = 1.351 [95% CI: 1.091–1.674], <i>p</i> = 0.006). Among participants without clinician-diagnosed AD, TBI history was not associated with false negatives. TBI moderates AD diagnostic accuracy. Possible AD misdiagnosis can mislead patients, influence treatment decisions, and confound research study designs. Further work examining the influence of TBI on dementia diagnosis is warranted.
DOI: 10.6084/m9.figshare.10282685
title: Database of ribosome binding site of all genes in Escherichia coli K-12 MG1655

description: Desire of synthesizing target molecules in large quantities in specific host organism requires the tunable and controllable expression of heterologous genes. Doing so necessitates the transcription of the heterologous genes as well as translation of the mRNA into a protein which may be the end product or serves as an enzyme catalyzing the biotransformation of a substrate into desired product. Similar in concept to promoters that recruit sigma factor for initiating transcription, ribosome binding sites (RBS) facilitate the binding of the small subunit (SSU) of the ribosome to mRNA to initiate translation. Differences in sequence of the ribosome binding site, which is generally annotated as 25 nucleotides upstream of the start codon, determines the relative binding affinity between it and the SSU of ribosome. This, in turn, influences the extent in which translation can be initiated and the quantity of protein product obtained. Hence, research effort has been directed to obtaining strong RBS that would significantly enhance the binding of the ribosome to the mRNA molecule for initiating translation. However, such efforts require prior knowledge of the RBS of particular genes. In this contribution, a database was created that catalogued the RBS sequence of all genes in <i>Escherichia coli </i>K-12 strain MG1655 (Genbank reference number, NC_000913.3). RBS sequence was defined as the stretch of DNA comprising 25 nucleotides upstream of the start codon of the gene, and was automatically parsed from the annotated genome sequence of <i>E. coli </i>K-12 strain MG1655 using an in-house MATLAB function. The database was created as an Excel file with two columns: gene identity and RBS sequence. Collectively, the RBS database of <i>E. coli</i> K-12 strain MG1655 should be useful as reference in understanding the influence of RBS sequence on translation efficiency as well as for molecular cloning work requiring the definition of the RBS sequence during plasmid construction.<br><br>
DOI: 10.6084/m9.figshare.10282607
title: The cost-effectiveness of metformin in pre-diabetics: a systematic literature review of health economic evaluations

description: <b>Objectives</b>: Our aim was to systematically identify and appraise cost-effectiveness studies of metformin in prediabetic subjects. <b>Methods</b>: A systematic literature review was conducted and reported according to standard guidlines. The search was conducted in PubMed, Embase, International Society for Pharmacoeconomics and Outcomes Research (ISPOR) presentation database and the Cost-Effectiveness Analysis (CEA) and Center for Reviews and Dissemination (CRD) registries. All cost-effectiveness studies assessing metformin in prediabetic patients were included. <b>Results</b>: Twenty-three reports were included. Metformin and intensive lifestyle changes (ILC) interventions were always cost-effective compared to placebo. ILC was cost-effective and sometimes dominant compared to metformin. Metformin was cost-saving compared to ILC in the short and medium-term. Although, in the long term, metformin was more expensive than ILC in terms of direct medical costs, when indirect non-medical costs are included, metformin less expensive than ILC. One study reported that for patients with Body Mass Index (BMI) higher than 30 kg/m2, metformin is a cost-effective strategy compared to placebo and ILC. However, this finding was not confirmed by other retrieved studies. <b>Conclusion</b>: ILC is cost-effective compared to metformin and, both of them are cost-effective compared to placebo. Metformin may be cost-saving in the short- to medium-term and possibly in the long-term.
DOI: 10.17608/k6.auckland.10282580
title: Supplementary Tables 1-18

description: <b>Supplementary Tables 1-18 for the paper "</b><b>Decoding the multimorbidities among psychiatric disorders and cognitive functioning"</b>
DOI: 10.6084/m9.figshare.10282607.v1
title: The cost-effectiveness of metformin in pre-diabetics: a systematic literature review of health economic evaluations

description: <b>Objectives</b>: Our aim was to systematically identify and appraise cost-effectiveness studies of metformin in prediabetic subjects. <b>Methods</b>: A systematic literature review was conducted and reported according to standard guidlines. The search was conducted in PubMed, Embase, International Society for Pharmacoeconomics and Outcomes Research (ISPOR) presentation database and the Cost-Effectiveness Analysis (CEA) and Center for Reviews and Dissemination (CRD) registries. All cost-effectiveness studies assessing metformin in prediabetic patients were included. <b>Results</b>: Twenty-three reports were included. Metformin and intensive lifestyle changes (ILC) interventions were always cost-effective compared to placebo. ILC was cost-effective and sometimes dominant compared to metformin. Metformin was cost-saving compared to ILC in the short and medium-term. Although, in the long term, metformin was more expensive than ILC in terms of direct medical costs, when indirect non-medical costs are included, metformin less expensive than ILC. One study reported that for patients with Body Mass Index (BMI) higher than 30 kg/m2, metformin is a cost-effective strategy compared to placebo and ILC. However, this finding was not confirmed by other retrieved studies. <b>Conclusion</b>: ILC is cost-effective compared to metformin and, both of them are cost-effective compared to placebo. Metformin may be cost-saving in the short- to medium-term and possibly in the long-term.
DOI: 10.6084/m9.figshare.10282601
title: Niche conservatism promotes speciation in cycads: the case of Dioon merolae (Zamiaceae) in Mexico

description: A .zip file contains five files: <br> 1) STRUCTURE format file obtained from the filtering and SNP identification method in STACKS, as described in the manuscript. <br> 2) Morphological data (15 traits) of 100 individuals used in the research. <br> 3) Climate data of 30 localities of <i>Dioon merolae</i> and 20 of other species of the Purpusii clade. <br> 4) RAD-seq raw data obtained from HiSeq2500 (Illumina) of 68 samples of <i>Dioon merolae</i>. <br> 5) A zip file with 21 clipped bioclimatic variables used in this research.
DOI: 10.17608/k6.auckland.10282580.v1
title: Supplementary Tables 1-18

description: <b>Supplementary Tables 1-18 for the paper "</b><b>Decoding the multimorbidities among psychiatric disorders and cognitive functioning"</b>
DOI: 10.6084/m9.figshare.10282310
title: Supplementary trees for three rumen ciliates

description: Supplementary trees for three rumen ciliates
DOI: 10.6084/m9.figshare.10282313
title: Paleomagnetism of the Carboniferous Gresford Block, Tamworth Belt, southern New England Orogen: minor counter-clockwise rotation of a primary arc segment

description: Four oroclinal structures have been identified from structural, magnetic and gravity trends across a Carboniferous continental arc, forearc basin [Tamworth Belt (TB)] and conjugate accretionary complex in the southern New England Orogen (SNEO) of eastern Australia. None of the structures has yet been confirmed conclusively by paleomagnetism as oroclinal. Ignimbrites are common within the forearc basin and have been demonstrated to retain primary magnetisations despite prevalent overprinting. They are well exposed across six major tectono-stratigraphic blocks with partly interlinked stratigraphies, making the forearc basin highly prospective to oroclinal testing by comparing pole path segments for individual blocks across curved structures. Paleomagnetic studies have shown no noticeable rotation across the western/southwestern TB (Rocky Creek, Werrie and Rouchel blocks), but documented herein is a minor counter-clockwise rotation of the Gresford Block of the southern TB. This study details paleomagnetic, rock magnetic and magnetic fabric results for 87 sites (969 samples) across the southern Gresford Block. Predominantly thermal, also alternating field and liquid nitrogen, demagnetisations show a widely present low-temperature overprint, attributed to regional late Oligocene weathering, and high-temperature primary and overprint components residing in both mainly magnetite and mainly hematite carriers. Subtle, but systematic, directional differences between magnetite and hematite subcomponents show the latter as the better cleaned, better-defined, preferred results, detailing nine primary poles of middle and late Carboniferous ages and Permian and Permo-Triassic overprints as observed elsewhere in the western/southwestern TB. The primary poles update a poorly defined mid-Carboniferous section of the SNEO pole path and demonstrate counter-clockwise rotation, quantified at about 15° ± 13° from comparison of mid-Carboniferous Martins Creek Ignimbrite Member poles for the Rouchel and Gresford blocks, that may not necessarily have been completed prior to the Hunter–Bowen phase of the Gondwanide Orogeny. This minor counter-clockwise rotation of the Gresford Block accentuates a primary curvature of the southwestern/southern TB and heralds further, more complex, rotations of the Myall Block of the southeastern TB.
DOI: 10.6084/m9.figshare.10282304
title: Elated or sad mood induction affects the attention of patients with a bipolar disorder less than that of patients with a depressive disorder

description: <b>Introduction:</b> The role of acute mood states as mediating factors in cognitive impairment in patients with mania or depression is not sufficiently clear. Similarly, the extent to which cognitive impairment is trait or state-specific remains an open question. Therefore, the aim of this study was to investigate the effect of a mood-induction on attention in patients with an affective disorder. <b>Methods:</b> Twenty-two depressed bipolar patients, 10 manic bipolar patients, 17 with a depressive episode (MDE), and 24 healthy controls performed the Attention-Network-Test (ANT). In a within-participants design, elated and sad moods were induced by an autobiographic recall and measured on a self-report scale. Subsequently, participants performed the ANT again. <b>Results:</b> The modulating effect of the elated mood induction on attention was small. Only the MDE group displayed moderate improvements in selective attention and tonic alertness. Surprisingly, after the sad mood induction, patients with MDE improved moderately on phasic and tonic alertness. Phasic alertness was also enhanced in patients with mania. Finally, after the mood induction, patients with MDE showed the largest variability in attentional performance. <b>Conclusions:</b> Results showed only small effects of mood induction on attention. This supports the view that attention deficits reflect trait variables.
DOI: 10.6084/m9.figshare.10282310.v1
title: Supplementary trees for three rumen ciliates

description: Supplementary trees for three rumen ciliates
DOI: 10.6084/m9.figshare.10282295
title: Small genomes in most mites (but not ticks)

description: Given their ecological and socioeconomic importance, it is not surprising that a number of mites (including ticks) have been the targets of recent genome sequencing projects. Less easily explained is why data on fundamental genetic parameters such as genome size (i.e. haploid DNA content) are greatly lacking for such a diverse and important group. Here, we compile the available genome size data for ticks and other mites, and add new estimates for another 20 species. We report a notable distinction in genome size between the comparatively larger genomes of ticks versus the (sometimes extremely) small genomes of non-tick mites. We also find a positive correlation between genome size and body size across mites, and explore some of the possible causes of the variability in genome size that exists among acarine species.