cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/ypxwmsh8hr.1
title: Male rats emit aversive 44-kHz ultrasonic vocalizations during prolonged Pavlovian fear conditioning. Olszyński, Polowy et al.

description: Wistar and SHR rats underwent fear conditioning (FC) with 0, 1, 6 or 10 shocks (1 s, 1.0 mA each). We have observed the rats which received 6-10 shocks, especially, to exhibit ultrasonic vocalizations (USV) which were long, flat – i.e., of constant frequency – usually within 35-50 kHz range. We named them 44-kHz USV. Here are raw data showing rats’ behavior during fear conditioning (FC) and USV playback sessions. The dataset is related to the publication in eLife by K.H. Olszynski, R. Polowy and others (DOI: 10.7554/eLife.88810), and includes four types of files:
1. Files in .xlsx format (5 folders, A–E),
2. Files in .wav format (10 recordings).
3. Files in .csv format (DBSCAN folder)
4. Files in .mat format (k-means folder)
The files are accompanied by their description.
1. 
A. FOLDER "FC_freezing, USV (10-s-intervals)" contains data from FC: freezing and number of emitted USV, presented in 10-s intervals. 
B. FOLDER "FC_USV" contains data from fear conditioning: emitted USV (properties of individual USV). 
C. FOLDER "Playback_distance, time, USV (10-s-intervals)" contains data from playback sessions (distance traveled, time spent in the half of the cage with the speaker, heart rate, number of emitted USV and 50-kHz USV), presented in 10-s intervals, with additional analysis of USV properties emitted in response to playback. 
D. FOLDER "Playback_USV" contains data from playback sessions: properties of individual USV emitted in response to ultrasonic playback. 
E. FOLDER “Data from selected rats” contains 3 files:
E.1. Step up and step down frequencies
Frequencies for assessing 22-kHz-elements vs. 44-kHz-elements frequency ratio:
E.2. Freezing during USV emission (data for Table 2)
Percent of freezing during 22-kHz and 44-kHz USV
E.3. Mean power (data for Figure 1–figure supplement 2)
Mean power, frequency, and category of USV, 

2. Files in .wav format. Two selected recordings, registered during fear conditioning sessions: 
2.1. FC_training_Wistar_delay_6-T_#63-6. This rat is also featured in Figure 1—figure supplement 1C (top row, first from the left). 
2.2. FC_training_Wistar_trace_10-T_#P44. 
2.3. Recordings used for playback experiments:
1. 44-kHz long calls
2. 22-kHz long calls
3. 22-kHz short modulated calls
4. 22-kHz short flat calls
5. 50-kHz modulated calls
6. 50-kHz flat calls
7. 50-kHz trill calls
8. 50-kHz mixed calls

3. Files in .csv format (DBSCAN folder); data supporting clustering files for DBSCAN algorithm (.csv) used in Figure 3A. File names contain: experiment number (E1–3), FC (for “fear conditioning”), rat strain (W, Wistar; SHR), rat group (S, single; P, paired; T0, 0-Trial; T1, 1-Trial; T6, 6-Trial; T10, 10-Trial), rat individual number.

4. Files in .mat format (k-means folder) contain extracted call contours used for k-means algorithm (.mat) and visualized in Figure 3BC, Figure 3—figure supplement 1.
DOI: 10.17632/nzt86s3r8p.1
title: Forces and grain-grain contacts in bidisperse beds sheared by viscous fluids_II (Data_6rpm)

description: These files include all .mat data results for a single case study (6rpm). With this data, we tracked the positions, velocities, forces, and solid contacts experienced by each grain, allowing us to analyze the distribution of forces caused either by fluid interactions or solid-solid contacts within the bed. Additionally, we explored the relationship between force propagation and the reorganization of grains in beds sheared by viscous flow.
DOI: 10.5281/zenodo.14307822
title: Pro-democracy platform advocacy: A dataset of project-related content

description: As part of an MSCA postdoctoral project entitled "Pro-Democracy Platform Advocacy: Fostering Social Media's Accountability to Dissident Voices under Authoritarianism", we share a dataset of (a) materials used in expert interviews conducted during December 2023 - March 2024, (b) metadata and coding on public Facebook content posted during March - April 2024, and (c) regression code and output of a model to assess the availability of pro-authoritarian accounts. First, we conducted semi-structured expert interviews with 38 respondents from Myanmar, Thailand, and Cambodia. Second, based on insight from the interviews, we built a list of prominent political Facebook accounts and keywords to capture Myanmar, Cambodian, and Thai authoritarian content, including pro-regime propaganda, anti-dissident disinformation, promotion of anti-dissident violence, or anti-dissident doxing content. We used CrowdTangle – Meta's own social media monitoring tool – to capture content on a daily basis based on our list of authoritarian accounts and keywords. This dataset includes metadata on random samples of 2000 Myanmar posts, 2000 Thai posts, and 2000 Cambodian posts with qualitative coding. Third, to examine whether Myanmar accounts that have posted authoritarian content are more likely to be removed by Meta afterwards, compared to non-Myanmar accounts, we ran a mixed-effects logistic regression (with Stata version 14.2) on all authoritarian posts in our coded dataset (N=3112).

To ensure privacy and confidentiality of vulnerable participants, this dataset does not contain (a) interview transcripts or interviewees' identifying information or (b) original social media posts or their identifying information such as URLs, authors' names, or channels' names. We further redacted other personal data from the informed consent forms.
DOI: 10.5281/zenodo.14307823
title: Pro-democracy platform advocacy: A dataset of public Facebook content

description: An anonymised dataset of metadata and coding on public Facebook content posted during March - April 2024. We first looked for public Facebook accounts or keywords associated with Myanmar, Cambodian, and Thai authoritarian content, including pro-regime propaganda, anti-dissident disinformation, promotion of anti-dissident violence, or anti-dissident doxing content. We used CrowdTangle – Meta's own social media monitoring tool – to capture content on a daily basis based on our list of authoritarian accounts and keywords. This dataset includes metadata on random samples of 2000 Myanmar posts, 2000 Thai posts, and 2000 Cambodian posts with qualitative coding. This dataset does not contain original social media posts or their identifying information such as URLs, authors' names, or channels' names.
DOI: 10.5281/zenodo.14471006
title: Pro-democracy platform advocacy: A dataset of project-related content

description: As part of an MSCA postdoctoral project entitled "Pro-Democracy Platform Advocacy: Fostering Social Media's Accountability to Dissident Voices under Authoritarianism", we share a dataset of (a) materials used in expert interviews conducted during December 2023 - March 2024, (b) metadata and coding on public Facebook content posted during March - April 2024, and (c) regression code and output of a model to assess the availability of pro-authoritarian accounts. First, we conducted semi-structured expert interviews with 38 respondents from Myanmar, Thailand, and Cambodia. Second, based on insight from the interviews, we built a list of prominent political Facebook accounts and keywords to capture Myanmar, Cambodian, and Thai authoritarian content, including pro-regime propaganda, anti-dissident disinformation, promotion of anti-dissident violence, or anti-dissident doxing content. We used CrowdTangle – Meta's own social media monitoring tool – to capture content on a daily basis based on our list of authoritarian accounts and keywords. This dataset includes metadata on random samples of 2000 Myanmar posts, 2000 Thai posts, and 2000 Cambodian posts with qualitative coding. Third, to examine whether Myanmar accounts that have posted authoritarian content are more likely to be removed by Meta afterwards, compared to non-Myanmar accounts, we ran a mixed-effects logistic regression (with Stata version 14.2) on all authoritarian posts in our coded dataset (N=3112).

To ensure privacy and confidentiality of vulnerable participants, this dataset does not contain (a) interview transcripts or interviewees' identifying information or (b) original social media posts or their identifying information such as URLs, authors' names, or channels' names. We further redacted other personal data from the informed consent forms.
DOI: 10.15468/dl.uea7sf
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is The Lepidoptera collection (EL) of the Muséum national d'Histoire naturelle (MNHN - Paris)",
 "Geometry POLYGON((121.12629 19.42903,119.65887 17.09727,119.34229 14.14249,118.1463 10.27313,116.66891 8.4088,122.75436 6.22788,125.95538 5.1726,127.38762 7.92647,125.41776 11.69031,123.79966 16.89636,121.12629 19.42903))"
 ]
}

 The dataset includes 55 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004280-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/fxdvbdk9y5.1
title: LDHU3_16.1330

description: Ubiquitin fold modifier protein | UFM1; Leishmania donovani (HU3 strain)
DOI: 10.17632/3pkw2bxmrd
title: Towards a Standardized Approach for Characterizing β-Fleck Defects in Titanium Alloys

description: The data obtained from Fiji-assisted image analysis provide an objective method for quantifying the size distribution and cumulative area distribution of the β-flecks in the aged Beta-C. Furthermore, this information is visually represented through a bar chart and line plot, which are presented explicitly in Figure 3d in the manuscript.
DOI: 10.17632/3pkw2bxmrd.1
title: Towards a Standardized Approach for Characterizing β-Fleck Defects in Titanium Alloys

description: The data obtained from Fiji-assisted image analysis provide an objective method for quantifying the size distribution and cumulative area distribution of the β-flecks in the aged Beta-C. Furthermore, this information is visually represented through a bar chart and line plot, which are presented explicitly in Figure 3d in the manuscript.
DOI: 10.17632/hdbbjbwxwy.1
title: Tree growth and twd 2021-2022 from automatic dendrometers_Czech Rep.

description: Hourly and daily tree growth (GRO), stem radius changes (Radius) and tree water deficit (TWD) from 89 trees collected in the Czech Republic in the climatically normal year 2021 and the unusually warm year 2022. Metadata for each tree is provided.
DOI: 10.17632/vf837489fx.1
title: LDHU3_16.1470

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/rv2b74gpmw.1
title: LDHU3_16.1440

description: Tyrosyl or methionyl-tRNA synthetase-like protein | EMAP-1; Leishmania donovani (HU3 strain)
DOI: 10.17632/37m4pmkkws.1
title: LDHU3_16.1410

description: Coenzyme Q-binding protein COQ10-like protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/bgvb6wdymc.1
title: LDHU3_16.1400

description: Hypothetical protein - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/35xtyptswp.1
title: The temporal evolution of light scattered by evaporating microdroplets of SiO2 nanoparticles suspension in DMSO.

description: The dataset comprises the results of measuring the temporal evolution of light intensity scattered by evaporating microdroplets of a SiO2 nanoparticle suspension with a diameter of 450 nm in DMSO. SiO2 concentration was ~2 wt%. These microdroplets were levitated in a quadrupole trap and illuminated by counter-propagating laser beams: a red (658 nm) vertically polarized (V) beam and a green (532 nm) horizontally polarized (H) beam, both with respect to the scattering plane. A comprehensive description of the experimental geometry is available in (M. Kolwas et al., Phys. Chem. Chem. Phys., 2015, 17, 6881--6888).

The *.csv file includes the following data:

Column 1: Time
Column 2: Intensity of scattered light integrated over the field of view, with the laser and detection channel both vertically polarized (V)
Column 3: Intensity of scattered light integrated over the field of view, with the laser vertically polarized (V) and the detection channel horizontally polarized (H) in cross-polarization
Column 4: Intensity of scattered light integrated over the field of view, with the laser and detection channel both horizontally polarized (H)
Column 5: Intensity of scattered light integrated over the field of view, with the laser horizontally polarized (H) and the detection channel vertically polarized (V) in cross-polarization
Column 6: DC voltage applied to the upper and lower electrodes of the electrodynamic balance required to counteract the gravitational force
Column 7: Operating frequency of the trapping AC electric field
Column 8: Time evolution of the radius of the evaporating droplet obtained using the library method described in (D. Jakubczyk et al., JQSRT 126 (2013) 99–104).
The *.avi files serve as examples of experimental measurements.
DOI: 10.17632/sz4gfk5s2b.1
title: Cardamine hirsuta leaf1 vs leaf8 time-lapse images

description: Raw confocal data used in the following Manuscript: 
TITLE: Age-associated growth control modifies leaf proximodistal symmetry and enabled leaf shape diversification
JOURNAL: Current Biology 
Article Type: Report 
Authors: Xin-Min Li, Hannah Jenke, Sören Strauss, Yi Wang, Neha Bhatia, Daniel Kierzkowski, Rena Lymbouridou, Peter Huijser, Richard S. Smith, Adam Runions, Miltos Tsiantis*
*Corresponding Authors: Miltos Tsiantis (tsiantis@mpipz.mpg.de)
Leaf early development (D1-D5, D, days after initiation) was tracked in Cardamine hirsuta juvenile (leaf1) versus adult (leaf8) leaves through live imaging in a 24-hrs time window. 
YFP signals from the plasma membrane were collected using a Leica TCS SP8 Confocal Laser Scanning Microscope, and images were channel-split and converted into .tif format stacks using FIJI. See the related publication for details.
DOI: 10.17632/773vfrmzwj.1
title: LDHU3_04.0570

description: Serine/threonine protein kinase; Leishmania donovani (HU3 strain)
DOI: 10.17632/wyh637wcxh.1
title: LDHU3_04.0640

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/x87b2828kd.1
title: Tideflat compaction, Damon Pt, Grays Harbor, Washington, USA

description: What happens after a MarshMaster MM2LX is driven around an intertidal flat? This "compaction" was tested as a possible mechanical control technique for burrowing shrimp (Neotrypaea californiensis), which are a pest to shellfish aquaculture on tidelands. The project evaluated treatment efficacy and non-target effects on infauna, birds, eelgrass, and oysters. Over 2022-2023, we sampled large (~2.5 ha) areas at Damon Point (Grays Harbor, Washington, USA) before and after compaction on August 12-13 2022, which were re-compacted in May 2023. We tracked two compacted (beds 9, 11) and three interspersed reference beds (beds 8, 10, 12).
DOI: 10.17632/vfprtkk4cm.1
title: DATASET: Bacteroides vesicles promote functional alterations in the gut microbiota composition

description: Inflammatory bowel diseases are characterized by chronic intestinal inflammation and alterations in the gut microbiota composition. Bacteroides fragilis, which secretes outer membrane vesicles (OMVs) with polysaccharide A (PSA), can moderate the inflammatory response and possibly alter the microbiota composition. In this study, we created a murine model of chronic DSS-induced intestinal colitis and treated it with Bacteroides fragilis OMVs. We monitored the efficiency of OMV therapy by determining the disease activity index (DAI) and performing histological examination (HE) of the intestine before and after vesicle exposure. We also analyzed the microbiota composition using 16S rRNA gene sequencing. Finally, we evaluated the volatile compound composition in the animals’ stools by HS-GC/MS to assess the functional activity of the microbiota. We observed more effective intestinal repair after OMV treatment according to the DAI and HE. A metabolomic study also revealed changes in the functional activity of the microbiota, with a predominance of phenol and pentanoic acid in the control group compared to the group treated with DSS (DSS) and the group treated with OMVs (DSS OMVs). We also observed a positive correlation of these metabolites with Saccharibacteria and Acetivibrio in the control group, whereas in the DSS group, there was a negative correlation of phenol and pentanoic acid with Lactococcus and Romboutsia. According to the metabolome and sequencing data, the microbiota composition of the DSS-treated OMV group was intermediate between that of the control and DSS groups. OMVs not only have an anti-inflammatory effect but also contribute to the recovery of the microbiota composition.
DOI: 10.17632/jt8r9kwdz7.1
title: LDHU3_04.0630

description: ADP-ribosylation factor; Leishmania donovani (HU3 strain)
DOI: 10.17632/38b92tm84p.1
title: LINF_250026700

description: Formin; Leishmania infantum (strain JPCM5)
DOI: 10.5258/soton/d3206
title: Dataset in support of the thesis "Predictive visualisation of laser processing via deep learning"

description: All figures are listed by chapter number and by figure number in the thesis (e.g. Fig_5_9_....

All datasets are listed by chapter number and by figure number. In the cases where specific datasets correspond to a parameter setting that setting (e.g. Fig_5_9_..._v=15.txt)
DOI: 10.17632/ythpgvdwb8.1
title: LINF_250027200

description: phosphatase domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/8dgrszxnf7.1
title: LINF_250026300

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/mvj89nc758.1
title: Data for: “Morphology and internal structure of small-scale washovers formed in the coastal zone of the semi-enclosed tideless basin, Gulf of Gdańsk, Baltic Sea”

description: The dataset contains spatial characteristics of washovers analysed in this study and broader compilation, including other authors: file Washovers_metrics. It also comprises grain size and shape analysis results delivered from Morphologi G3 image analyser: file Grain-size-shape-descriptors.
DOI: 10.17632/5y273zfdy9
title: supplementary information

description: Objective: To accurately quantify the relationship between the presence of depression or depressive symptoms in patients with vitiligo. Design: Systematic review and meta-analysis.Data sources: A search Of PubMed, Web of Science, and Embase database was performed. Eligibility criteria for selection of studies: Prospective or retrospective cohort or population studies that provide data related to depressive symptoms in normal and vitiligo patients of all ages during the study period. We included English studies published after 2000 to reflect the contemporary real-life situation of depression rates among vitiligo patients.Data extraction and synthesis: Two reviewers independently screened the retrieved citationsand extracted data. Results: A total of 786 articles were included, the full texts of 30 articles were assessed for eligibility (13 case-control, and 17 cross-sectional). Most of these articles are from India, a few from Europe. and the pooled prevalence of depression or depressive symptoms among vitiligo patients was 0.31 (I2=95.0%, p &lt;0.001). The pooled prevalence of depression was higher in patients with vitiligo compared with health control ((OR 10.25 SMD 0.60). Conclusions: Vitiligo patients are more likely to suffer from depression or depressive symptoms, thus clinicians need to manage physical illnesses along with psychiatric issues.
DOI: 10.17632/5y273zfdy9.1
title: supplementary information

description: Objective: To accurately quantify the relationship between the presence of depression or depressive symptoms in patients with vitiligo. Design: Systematic review and meta-analysis.Data sources: A search Of PubMed, Web of Science, and Embase database was performed. Eligibility criteria for selection of studies: Prospective or retrospective cohort or population studies that provide data related to depressive symptoms in normal and vitiligo patients of all ages during the study period. We included English studies published after 2000 to reflect the contemporary real-life situation of depression rates among vitiligo patients.Data extraction and synthesis: Two reviewers independently screened the retrieved citationsand extracted data. Results: A total of 786 articles were included, the full texts of 30 articles were assessed for eligibility (13 case-control, and 17 cross-sectional). Most of these articles are from India, a few from Europe. and the pooled prevalence of depression or depressive symptoms among vitiligo patients was 0.31 (I2=95.0%, p &lt;0.001). The pooled prevalence of depression was higher in patients with vitiligo compared with health control ((OR 10.25 SMD 0.60). Conclusions: Vitiligo patients are more likely to suffer from depression or depressive symptoms, thus clinicians need to manage physical illnesses along with psychiatric issues.
DOI: 10.17632/xfm2ykjb78.1
title: Behavioral Improvements through CICO: Insights from a pilot study in Romanian Primary Schools

description: The study used checklists, self-reports, and observations to measure implementation fidelity. This multi-faceted approach ensured comprehensive monitoring of both system-level and procedural aspects of the intervention. Data was collected from eight students from primary education. The research team analyzed the data employing a piecewise latent growth curve methodology was used to statistically test and analyze the data.
DOI: 10.17632/sdzxx4r58x.1
title: LINF_260005550

description: zinc finger protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/vbh32rt7kn.1
title: LINF_260005000

description: Lsm7-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/tjhz7rpxp5.1
title: LINF_260005500

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/nz4g5kz766.2
title: Data on spray-drying microencapsulation of Schinus terebinthifolius essential oil

description: Schinus terebinthifolius Raddi has been extensively studied due to its phamaceutical and insecticide properties. 
Microencapsulation by spray-drying is widely used in the food and drug industries, as well as in the microencapsulation of essential oils, since it protects the oils against several effects, such as oxidation and thermal degradation, thus optimising its use. 

The data presented include parameters for the production of essential oil microparticles using maltodextrin (MD), arabic gum (AG) as encapsulating agents and silicon dioxide (SiO2) as the dispersing agent. The microencapsulating agents and the spray-drying technique produced microcapsules capable of protecting the essential oil against external effects, such as thermal degradation. In the second worksheet of the file, it is possible to observe the measurements of the diameters of 250 microparticles and the calculation of the histogram that indicates the size average of the microparticles formed.
The third and fourth worksheets of the file contain data from thermogravimetric analyses of microparticles with and without oil, respectively. The fifth and sixth worksheets contains images of the microparticles obtained by Scanning Electron Microscopy (SEM) and Scanning Electron Microscopy-Energy Dispersive Spectroscopy (SEM-EDS) analyses, respectively .
The described formulation and characterisation can be used as support for research work in the pharmaceutical, textile and agronomic food technology areas that use essential oils in their products.