cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/d2jwr94vxt.1
title: IJP - Co-introduction of Dolicirroplectanum lacustre, a monogenean gill parasite of the invasive Nile perch Lates niloticus: Intraspecific diversification and mitonuclear discordance in native versus introduced areas

description: General: 
We examined the intra-specific diversification of Dolicirroplectanum lacustre from L. niloticus in Lake Albert (native range) and Lake Victoria (introduced range) by assessing morphological and genetic differentiation, and microhabitat preference. 

Hypotheses:
We hypothesise that: (1) a founder effect had taken place in Lake Victoria. Hence, we expect reduced genetic and morphological diversity within D. lacustre in its introduced range in comparison with its native population in Lake Albert; (2) we expect high phenotypic variation and low genetic differentiation in Lake Albert, as supported by the presence of distinct morphotypes in earlier studies (Kmentová et al., 2020a; Thurston and Paperna, 1969); (3) there has been a niche shift among the populations in Lake Albert that resulted in differential gill microhabitat preferences which led to morphological changes of D. lacustre, producing an (imperfect) reproductive barrier between the morphotypes.

Results and interpretation:
We found that D. lacustre displays high morphological variability within and between African freshwaters, with two morphotypes identified. The single shared morphotype between Lake Albert and Lake Victoria displayed similar levels of haplotype and nucleotide diversity. Mitonuclear discordance within the morphotypes of D. lacustre indicates an incomplete reproductive barrier between the morphotypes. The diversification in the mitochondrial gene portion is directly linked with the morphotypes, while the nuclear gene portions indicate conspecificity. Based on our results, we reported reduced genetic and morphological diversity, potentially being a result of a founder effect in Lake Victoria. 

Data collection:
The pairs of gills from 12 specimens of Lates niloticus (5 specimens from Lake Albert, 7 specimens from Lake Victoria) were dissected and preserved in ethanol (99% EtOH). The gills were examined using a Leica EZ4 stereomicroscope. Monogenean gill parasites were extracted, individuals were cut in three parts with the posterior and anterior parts mounted on slides (Hoyer’s medium as fixative) for morphological characterisation, the central part was preserved in ethanol (99% EtOH) for genetic analyses. The microhabitat on the gill was recorded by subdivision of each gill arch into nine microhabitats.
Data collection protocols explained in the section 'Steps to reproduce'.

Data analysis:
The R Script describes the workflow for the morphometric analyses, and the microhabitat description (data files provided).
DOI: 10.17632/bs6myg75tr.1
title: Compounds Activity Dopamine D2 Receptor

description: Those data were used as dataset in the work "EdgeSHAPer: Bond-Centric Shapley Value-Based Explanation Method for Graph Neural Networks". They contain compounds with activity against the dopamine D2 receptor, filtered as stated in the paper. Here you can find a .csv containing both active (label 0) and randomly selected compounds (label 1), along with the data split into training, validation and test sets, as used in the work.
DOI: 10.17632/bs6myg75tr.2
title: Compounds with Activity against the Dopamine D2 Receptor

description: The compound data sets originating from ChEMBL and its partitions were in the study "EdgeSHAPer: Bond-Centric Shapley Value-Based Explanation Method for Graph Neural Networks". They contain compounds with activity against the dopamine D2 receptor and randomly selected active compounds, respectively, curated as described in the paper. The .csv file contains both active (label 0) and randomly selected compounds (label 1), together with partitions into training, validation, and test sets used in the study.
DOI: 10.17632/pfkhyry6wt.1
title: Data files from: "SARS-CoV-2 infected children form early immune memory responses dominated by nucleocapsid-specific CD8+ T cells and antibodies"

description: Data regarding figures from the paper: SARS-CoV-2 infected children form early immune memory responses dominated by nucleocapsid-specific CD8+ T cells and antibodies
DOI: 10.17632/pw438yj59s.2
title: Imaging the distribution of bitumen contaminants in shallow coastal plain sands in Southwestern Nigeria using electrical resistivity

description: 1D and 2D electrical resistivity data sets from an insitu bitumen contaminated site. 
ERT - Electrical Resistivity Tomography
Stations - Vertical Electrical Sounding Station
DOI: 10.7284/122515
title: Multiplexed data collected during research cruise HRS1502 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122516
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1502 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17632/ssj66hy8sd.1
title: CTCF DNA binding domain undergoes dynamic and selective protein–protein interactions 

description: The full-size grayscale TIFF image of each main figure panel in the manuscript "CTCF DNA binding domain undergoes dynamic and selective protein–protein interactions "
Our results reveal an interesting phenomenon in which CTCF DBD interacts with insulator proteins and selectively localizes to nuclear positions with lower concentrations of transcriptional activators, providing insights into the insulation function of CTCF.
DOI: 10.17632/2ds6j8n5g3.1
title: The amount of SARS-CoV-2 RNA in wastewater relates to the development of the pandemic and its burden on the health system. Hao et al

description: Virus surveillance in wastewater can be a useful indicator of the development of the COVID-19 pandemic in communities. However, knowledge about how the amount of SARS-CoV-2 RNA in wastewater relates to different data on the burden on the health system is still limited. Herein, we monitored the amount of SARS-CoV-2 RNA and the spectrum of virus variants in weekly pooled wastewater samples for two years from mid-February 2020 and compared with several clinical data. The two-year monitoring showed the weekly changes in the amount of viral RNA in wastewater preceded the hospital care needs for COVID-19 and the number of acute calls on adult acute respiratory distress by 1-2 weeks during the first three waves of COVID-19. Our study demonstrates that virus surveillance in wastewater can predict the development of a pandemic and its burden on the health system, regardless of society's test capacity and possibility of tracking infected cases.
DOI: 10.17632/x7kk4rkpj3.1
title: 1H-detected staggered 15N and 13C R1 and R1ρ relaxation measurements - pulse sequences and data

description: This data set contains data accompanying the manuscript "Accelerating 15N and 13C R1 and R1ρ relaxation measurements by multiple pathway solid-state NMR experiments" by Tognetti et al.: - NMR pulse sequences in Bruker format for 1H-detected staggered 15N and 13C R1 and R1ρ relaxation measurements with tips for how to set them up. The pulse sequences were tested on an Avance III HD Bruker console. - Raw NMR data presented in the manuscript
DOI: 10.17632/x7kk4rkpj3.2
title: 1H-detected staggered 15N and 13C R1 and R1ρ relaxation measurements - pulse sequences and data

description: This data set contains data accompanying the manuscript "Accelerating 15N and 13C R1 and R1ρ relaxation measurements by multiple pathway solid-state NMR experiments" by Tognetti et al.:
- NMR pulse sequences in Bruker format for 1H-detected staggered  15N and 13C R1 and R1ρ relaxation measurements with tips for how to set them up. The pulse sequences were tested on an Avance III HD Bruker console.
- Raw NMR data presented in the manuscript
DOI: 10.17632/kjpj9n66jg.1
title: Developmental trajectories of thalamic nuclei revealed by single-cell transcriptome profiling and Shh perturbation

description: The thalamus is the principal information hub of the vertebrate brain, with essential roles in sensory and motor information processing, attention, and memory. The complex array of thalamic nuclei develops from a restricted pool of neural progenitors. We apply longitudinal single-cell RNA-sequencing and regional abrogation of Sonic hedgehog (Shh) to map the developmental trajectories of thalamic progenitors, intermediate progenitors, and post-mitotic neurons as they coalesce into distinct thalamic nuclei. These data reveal that the complex architecture of the thalamus is established early during embryonic brain development through the coordinated action of four cell differentiation lineages derived from Shh-dependent and independent progenitors. We systematically characterize the gene expression programs that define these thalamic lineages across time and demonstrate how their disruption upon Shh depletion causes pronounced locomotor impairment resembling infantile Parkinson’s disease. These results reveal key principles of thalamic development and provide mechanistic insights into neurodevelopmental disorders resulting from thalamic dysfunction.
DOI: 10.17632/ngmrp8mp7c.1
title: Data for Figure 6, 7 and 8

description: Here is the data for Figure 6, 7 and 8 in the manuscript.
DOI: 10.17632/hhbcxysh54.1
title: CMID Trash Mark Macro Datasets

description: Xerographic devices use electrostatic charges to print toner onto a document.  These machines are prone to leaving characteristic, repeatable marks known as trash marks.  This data was collected using a custom, standardized methodology to identify such marks.  Furthermore, this work took advantage of cumulative minimum inter-set distances (CMIDs) to inter-compare fifty machine exemplar sets.  Discriminating pairs tables were reported to summarize exemplar set pairwise comparisons.
DOI: 10.7284/122524
title: Multiplexed data collected during research cruise HRS1505 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122525
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1505 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122526
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1505 using a SeaBird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17632/9627bbr7y8.1
title: Tropical interspecific raspberry panel data

description: Make available all datasets related to the "Tropical interspecific raspberry panel"
https://bv.fapesp.br/pt/auxilios/106448/componentes-epidemiologicos-caracterizacao-de-danos-e-controle-de-ferrugens-tropicais-e-temperadas-e/
DOI: 10.17632/tgggwcmhyz.1
title: An Open Source Head-Fixation and Implant-Protection System for Mice

description: These files accompany the paper entitled "An Open Source Head-Fixation and Implant-Protection System for Mice" in HardwareX. We kindly ask that you cite our HardwareX paper if you use any of our files.

Here we present a suite of open source, customizable head fixation designs with standard variants including head-fix hardware as well as implant protection systems. 3D printable files are included as both .stl (for easy upload and printing with no modifications) as well as .sldprt (for modification in SolidWorks). Please note that ALL Headbar designs DO work with the same Headfix Mounting Hardware, for ease of integration. 

In this file repository you will find:
1)"Headfix Mounting Hardware V1.2" - these files correspond to the fork-like design in the Headfix Rig used to immobilize the Headbar affixed to the mouse's skull. This design works with ALL Headbar variants (e.g. V1.2, V3.1, V4.0). 

2) "Headbar V1.2" - these files correspond to the simplified Headbar design that does not have attachment points for the HeadHat. This design offers no implant protection. 

3) "Headbar V3.1" - these files correspond to a modified Headbar design that does have attachment points for the V3.1 HeadHat. This Headbar/HeadHat combination is appropriate for small electrode and cannula guide implants. 

4) "HeadHat V3.1" - these files are for the HeadHat V3.1 which clips onto the HeadbarV3.1 for the protection of implants

5) "V3.1_dimensions" - this is a .pdf file detailing dimensions of this HeadbarV3.1/HeadHat V3.1 combination.

6) "HeadbarV4.0" - these files correspond to a modified Headbardesign that does have attachment points for the V4.0 HeadHat. This design has a larger footprint than the other variants. This Headbar/HeadHat combination is appropriate for large electrode or other implants. 

7) "HeadHat V4.0" - these files are for the HeadHat V4.0 which clips onto the HeadbarV4.0 for the protection of implants

8) "V4.0_dimensions" - this is a .pdf file detailing dimensions of this HeadbarV4.0/HeadHat V4.0 combination.

9) "Headfix Base Drill Pattern" - this is a .pdf diagram detailing the four holes that will need to be made in the plastic base during assembly of the Headfix Rig in order to headfix an animal.
DOI: 10.17632/tgggwcmhyz.2
title: An Open Source Head-Fixation and Implant-Protection System for Mice

description: These files accompany the paper entitled "An Open Source Head-Fixation and Implant-Protection System for Mice" in HardwareX. We kindly ask that you cite our HardwareX paper if you use any of our files.

Here we present a suite of open source, customizable head fixation designs with standard variants including head-fix hardware as well as implant protection systems. 3D printable files are included as both .stl (for easy upload and printing with no modifications) as well as .sldprt (for modification in SolidWorks). Please note that ALL Headbar designs DO work with the same Headfix Mounting Hardware, for ease of integration. 

In this file repository you will find:
1)"Headfix Mounting Hardware V1.2" - these files correspond to the fork-like design in the Headfix Rig used to immobilize the Headbar affixed to the mouse's skull. This design works with ALL Headbar variants (e.g. V1.2, V3.1, V4.0). 

2) "Headbar V1.2" - these files correspond to the simplified Headbar design that does not have attachment points for the HeadHat. This design offers no implant protection. 

3) "Headbar V3.1" - these files correspond to a modified Headbar design that does have attachment points for the V3.1 HeadHat. This Headbar/HeadHat combination is appropriate for small electrode and cannula guide implants. 

4) "HeadHat V3.1" - these files are for the HeadHat V3.1 which clips onto the HeadbarV3.1 for the protection of implants

5) "V3.1_dimensions" - this is a .pdf file detailing dimensions of this HeadbarV3.1/HeadHat V3.1 combination.

6) "HeadbarV4.0" - these files correspond to a modified Headbardesign that does have attachment points for the V4.0 HeadHat. This design has a larger footprint than the other variants. This Headbar/HeadHat combination is appropriate for large electrode or other implants. 

7) "HeadHat V4.0" - these files are for the HeadHat V4.0 which clips onto the HeadbarV4.0 for the protection of implants

8) "V4.0_dimensions" - this is a .pdf file detailing dimensions of this HeadbarV4.0/HeadHat V4.0 combination.

9) "Headfix Base Drill Pattern" - this is a .pdf diagram detailing the four holes that will need to be made in the plastic base during assembly of the Headfix Rig in order to headfix an animal.
DOI: 10.17632/znfy69xbr2.1
title: Qualitative Content Analysis of Polish Textbooks in Terms of  Gender Equality: PLOS ONE

description: The main aim of the study was to identify the image of gender equality in Polish primary school textbooks. A thematic analysis of textbook content with elements of constant comparison method was carried out based on the six domains of the Gender Equality Index: work, money, knowledge, time, power and health. A total of 56 textbooks (32 Polish language textbooks and workbooks and 24 mathematics textbooks and workbooks) for primary school grades seven and eight were analysed. The content of the analysed textbooks seems to reflect the findings of the Gender Equality Index (GEI) regarding the Polish social reality.
DOI: 10.17632/znfy69xbr2.2
title: Qualitative content analysis of Polish textbooks in terms of  gender equality

description: The main aim of the study was to identify the image of gender equality in Polish primary school textbooks. A thematic analysis of textbook content with elements of constant comparison method was carried out based on the six domains of the Gender Equality Index: work, money, knowledge, time, power and health. A total of 56 textbooks (32 Polish language textbooks and workbooks and 24 mathematics textbooks and workbooks) for primary school grades seven and eight were analysed. The content of the analysed textbooks seems to reflect the findings of the Gender Equality Index (GEI) regarding the Polish social reality.
DOI: 10.7284/122527
title: Multiplexed data collected during research cruise HRS1506 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122528
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1506 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122530
title: Multiplexed data collected during research cruise HRS1507 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122531
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1507 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122532
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1507 using a SeaBird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122536
title: Multiplexed data collected during research cruise HRS1509 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122537
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1509 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122539
title: Multiplexed data collected during research cruise HRS1510 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122540
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1510 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122541
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1510 using a SeaBird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123464
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1601 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123480
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1605 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123484
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1606 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125167
title: Multiplexed data collected during research cruise HRS1611 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125168
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1611 using a Hawaii UHDAS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127628
title: Multiplexed data collected during research cruise HRS1701HB using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127629
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1701HB using a Hawaii UHDAS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127625
title: GNSS (Global Navigation Satellite System) data collected during research cruise HRS1701HB using a Furuno GP-37 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127626
title: INS (Inertial Navigation System) data collected during research cruise HRS1701HB using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.20033012
title: Characterization of Canine CD34+/CD45 diminished Cells by Colony-forming Unit Assay and Transcriptome Analysis

description: In veterinary medicine, peripheral blood stem cells have been successfully used for haematopoietic stem cell transplantation, especially in cases of canine B-cell and T-cell lymphoma. However, the cell surface antigens and gene expression profiles of canine Haematopoietic stem and progenitor cells (HSPCs) are yet to be elucidated. The goals of this project are attempted to characterize the canine HSPCs using colony-forming unit assay and RNA sequencing analysis. We compared the haematopoietic colony forming abilities and HSPC-specific cell surface antigen gene expressions among whole viable cells (control), CD34+ cells, and CD34+/CD45dim cells. We believe that our study makes a significant contribution to the literature because our observations highlight the potential of the CD34+/CD45dim cells to be used as markers for studying canine haematopoietic stem cells. Further, we believe that this paper will help to exclusively identify the canine HSPCs, which, in turn, will help to develop treatment options for canine patients suffering from haematopoietic tumour diseases.