cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.828488
title: De novo assembly of Ensete ventricosum genome sequence

description: This file contains a de novo assembly of the Ensete ventricosum genome based on whole-genome shotgun sequencing by Illumina HiSeq paired reads and assembled using SOAPdenovo. This assembly has, in part, been submitted to GenBank under accession number AMZH00000000.1 (http://www.ncbi.nlm.nih.gov/nuccore/AMZH00000000.1/). However, because of limitations on the number of supercontigs/contigs that GenBank will accept, we did not submit supercontigs and contigs of shorter than 5 kb. The raw data are available from the Sequence Read Archive under accession number SRX202265 (see http://www.ncbi.nlm.nih.gov/sra?LinkName=nuccore_sra_wgs&from_uid=440571971). Data are described in this paper: Harrison, J.; Moore, K.A.; Paszkiewicz, K.; Jones, T.; Grant, M.R.; Ambacheew, D.; Muzemil, S.; Studholme, D.J. A Draft Genome Sequence for Ensete ventricosum, the Drought-Tolerant “Tree Against Hunger”. Agronomy 2014, 4, 13-33.
DOI: 10.6084/m9.figshare.828511.v1
title: Magnetotelluric data from GAB mound springs

description: Estimated tensor impedances from magnetotelluric sites at GAB mound springs.
DOI: 10.6084/m9.figshare.828487.v2
title: Fidgit

description: A ungodly union of GitHub and Figshare
DOI: 10.6084/m9.figshare.828481.v1
title: ThePrimate® - HPW and NNs Ecosystem based on DDC+ classification oriented to singularities' peculiarities

description: ThePrimate® is an HPW [High Power Web] platform which allows dynamic classification of digital resources from european databases - including those coming from Europeana - the easy retrieval of data, reuse of items and methods based on enhanced tools, a deeper layer of attached information. The platform is strictly connected to Filamento®, an original IoT [Internet of Things] framework, determining a lattice of precisely identifiable talking objects in the real environment, related as digital items in a Network of networks (NNs). The structure of graph is founded on the keys of “affinity” and “proximity”, it is modifiable according to singular needs and reusable to many different issues. The circulation of resources among the users is reinforced by an original economic paradigm based on a virtual currency, determining self- sustaining.
DOI: 10.6084/m9.figshare.828487.v4
title: Fidgit - DOIs for code

description: An ungodly union of GitHub and Figshare
DOI: 10.6084/m9.figshare.828487.v5
title: Fidgit - DOIs for code

description: An ungodly union of GitHub and Figshare
DOI: 10.6084/m9.figshare.828336
title: Email explaining how to comply with OA policy

description: Email with some instructions sent to the GSE community on how to comply with the student OA policy
DOI: 10.6084/m9.figshare.828336.v1
title: Email explaining how to comply with OA policy

description: Email with some instructions sent to the GSE community on how to comply with the student OA policy
DOI: 10.6084/m9.figshare.828275
title: Stanford GSE Student Open Access Policy

description: Files with information related to the student open access policy passed at the Stanford Graduate School of Education
DOI: 10.6084/m9.figshare.828273
title: emails sent prior to GSE Student OA policy

description: Email sent out informing students and encouraging them to vote on the student OA policy
DOI: 10.6084/m9.figshare.828273.v1
title: emails sent prior to GSE Student OA policy

description: Email sent out informing students and encouraging them to vote on the student OA policy
DOI: 10.6084/m9.figshare.827286
title: Mapping ecological concepts using twitter

description: Interactions between key concepts mentionned on Twitter in tweets containing words from the field of ecology. See the URL for more details on the methodology. These data come from a series of relatively short sampling sessions.
DOI: 10.6084/m9.figshare.827290
title: Lillis_HVAC_Filter_16S

description: Illumina MiSeq 16S sequences from HVAC filters in a multiuse University of Oregon building.
DOI: 10.6084/m9.figshare.827292.v1
title: Data for "Preference patterns for skewed gambles in rhesus monkeys"

description: Data for the paper, "Preference patterns for skewed gambles in rhesus monkeys."
DOI: 10.6084/m9.figshare.828275.v1
title: Stanford GSE Student Open Access Policy

description: Files with information related to the student open access policy passed at the Stanford Graduate School of Education
DOI: 10.6084/m9.figshare.827280
title: Morphological phylogeny of Asilidae by Dikow 2009

description: Digital illustrations (vector graphics in .svg-format) of morphological hypotheses of phylogenetic relationships (cladograms) within Asilidae. Digital illustrations of morphological features of Asilidae. Morphological matrix and tree files.
DOI: 10.6084/m9.figshare.827286.v1
title: Mapping ecological concepts using twitter

description: Interactions between key concepts mentionned on Twitter in tweets containing words from the field of ecology. See the URL for more details on the methodology. These data come from a series of relatively short sampling sessions.
DOI: 10.6084/m9.figshare.827280.v1
title: Morphological phylogeny of Asilidae by Dikow 2009

description: Digital illustrations (vector graphics in .svg-format) of morphological hypotheses of phylogenetic relationships (cladograms) within Asilidae. Digital illustrations of morphological features of Asilidae.
DOI: 10.6084/m9.figshare.827280.v2
title: Morphological phylogeny of Asilidae by Dikow 2009

description: Digital illustrations (vector graphics in .svg-format) of morphological hypotheses of phylogenetic relationships (cladograms) within Asilidae. Digital illustrations of morphological features of Asilidae.
DOI: 10.6084/m9.figshare.827260
title: Do It Yourself Alcohol Lamp

description: A simple Do It Yourself (DIY) Alcohol Lamp for home laboratories. Original article posted on Science 2.0: http://www.science20.com/square_root_not/diy_spirit_lamp-110438 and featured on Citizen Scientists League: http://citizenscientistsleague.com/2013/05/01/diy-spirit-lamp/
DOI: 10.6084/m9.figshare.827254
title: Expression profiles of miR-23b and miR-23b in peripheral blood mononuclear cells of patients with dermatomyositis and polymyositis

description: RNA was extracted from peripheral blood mononuclear cells (PBMCs) of patients and controls and TaqMan gene specific miRNA assays were used to quantify the expression levels of mature miR-23b and miR-23b* (miR23b star) molecules against controls (RNU44, RNU48, RNU6B, U47).
DOI: 10.6084/m9.figshare.827280.v3
title: Morphological phylogeny of Asilidae by Dikow 2009

description: Digital illustrations (vector graphics in .svg-format) of morphological hypotheses of phylogenetic relationships (cladograms) within Asilidae. Digital illustrations of morphological features of Asilidae.
DOI: 10.6084/m9.figshare.827254.v1
title: Expression profiles of miR-23b and miR-23b in peripheral blood mononuclear cells of patients with dermatomyositis and polymyositis

description: RNA was extracted from peripheral blood mononuclear cells (PBMCs) of patients and controls and TaqMan gene specific miRNA assays were used to quantify the expression levels of mature miR-23b and miR-23b* (miR23b star) molecules against controls (RNU44, RNU48, RNU6B, U47).
DOI: 10.6084/m9.figshare.827250
title: Preprocessors

description: Scripts to deal with reference files
DOI: 10.6084/m9.figshare.827251
title: Gaussian Job Archive for C3H3BN2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.827250.v1
title: Preprocessors

description: Scripts to deal with reference files
DOI: 10.6084/m9.figshare.827251.v1
title: Gaussian Job Archive for C3H3BN2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.827280.v4
title: Morphological phylogeny of Asilidae by Dikow 2009

description: Digital illustrations (vector graphics in .svg-format) of morphological hypotheses of phylogenetic relationships (cladograms) within Asilidae. Digital illustrations of morphological features of Asilidae.
DOI: 10.6084/m9.figshare.826213
title: Data from "Millennial stocks and fluxes of large woody debris in lakes of the North American taiga"

description: This dataset (tab-delimited text file) contains data from 2194 Large Woody Debris (LWD) pieces that were sampled along 3330 m of shoreline in five lakes of the northern taiga of Quebec, Eastern Canada. These data were used in the article "Millennial stocks and fluxes of large woody debris in lakes of the North American taiga", published in Journal of Ecology.<br>Each row contains data on one LWD piece. Column headings are described below: LWD_ID = ID of the LWD piece<br>Lake = Lake in which the LWD piece was collected<br>Shore = Shore segment in which the LWD piece was collected<br>Species = Species of the LWD piece (black spruce, balsam fir, tamarack)<br>Root = Presence of main roots still connected or not<br>Orientation = Orientation relative to the shoreline of the LWD piece<br>Charred = Presence of charcoal on the trunk or the branch tips<br>Crossdated = LWD piece crossdated to the calendar year (calendar) or into a floating chronology (chronology ID)<br>AMSDate = Radiocarbon dated LWD piece<br>NTreeRings = Number of tree-rings of the LWD piece<br>Residence_Time = Residence time in the lake of the LWD piece (year)<br>FirstTreeRing = Date of the innermost tree-ring of the LWD piece (year AD/BC)<br>LastTreeRing = Date of the outermost tree-ring of the LWD piece (year AD/BC)<br>FirstMesuredTreeRing = Date of the first measured tree-ring of the LWD piece (year AD/BC)<br>LastMesuredTreeRing = Date of the last measured tree-ring of the LWD piece (year AD/BC)<br>Burial = Burial type of the LWD piece<br>Diameter = Diameter of the LWD piece (cm)<br>Length = Length of the LWD piece (cm)<br>Volume = Volume of the LWD piece (m^3)<br>Distance = Minimum distance from the shore of the LWD piece (cm)<br>Depth = Minimum depth in the water of the LWD piece (feet)<br>BurialType = Burial type of the LWD piece (completely buried =3; partly buried =2; exposed =1)<br>Substratum = The type of underlying substratum (fine sediments =5; sand =4; gravel =3; stones =2; wood =1)<br>Aspect = The aspect of the corresponding littoral zone (from 0 to 2)<br>Exposure = The exposure to the wave action of the littoral zone (cm)<br>Orientation2 = Orientation relative to the shoreline of the LWD piece (perpendicular =3; parallel =2; inverted=1) Further details can be found in the published article.
DOI: 10.6084/m9.figshare.827246
title: Calculate posterior probability of association conditional on association in related disease

description: 1 This repository contains R code used to perform numerical calculations exploring the appropriate p value thresholds for calling genetic association in one disease given genomewide significant genetic association at the same SNP in a related disease. See README.md for more details.
DOI: 10.6084/m9.figshare.827247
title: Prepare Flybase GTF file

description: Script using cufflinks' gffread to generate a clean GTF file for use with cufflinks and htseq
DOI: 10.6084/m9.figshare.827246.v2
title: Calculate posterior probability of association conditional on association in related disease

description: 1 This repository contains R code used to perform numerical calculations exploring the appropriate p value thresholds for calling genetic association in one disease given genomewide significant genetic association at the same SNP in a related disease. See README.md for more details.
DOI: 10.6084/m9.figshare.827247.v1
title: Prepare Flybase GTF file

description: Script using cufflinks' gffread to generate a clean GTF file for use with cufflinks and htseq
DOI: 10.6084/m9.figshare.826213.v1
title: Data from "Millennial stocks and fluxes of large woody debris in lakes of the North American taiga"

description: This dataset (tab-delimited text file) contains data from 2194 Large Woody Debris (LWD) pieces that were sampled along 3330 m of shoreline in five lakes of the northern taiga of Quebec, Eastern Canada. These data were used in the article "Millennial stocks and fluxes of large woody debris in lakes of the North American taiga", published in Journal of Ecology.<br>Each row contains data on one LWD piece. Column headings are described below: LWD_ID = ID of the LWD piece<br>Lake = Lake in which the LWD piece was collected<br>Shore = Shore segment in which the LWD piece was collected<br>Species = Species of the LWD piece (black spruce, balsam fir, tamarack)<br>Root = Presence of main roots still connected or not<br>Orientation = Orientation relative to the shoreline of the LWD piece<br>Charred = Presence of charcoal on the trunk or the branch tips<br>Crossdated = LWD piece crossdated to the calendar year (calendar) or into a floating chronology (chronology ID)<br>AMSDate = Radiocarbon dated LWD piece<br>NTreeRings = Number of tree-rings of the LWD piece<br>Residence_Time = Residence time in the lake of the LWD piece (year)<br>FirstTreeRing = Date of the innermost tree-ring of the LWD piece (year AD/BC)<br>LastTreeRing = Date of the outermost tree-ring of the LWD piece (year AD/BC)<br>FirstMesuredTreeRing = Date of the first measured tree-ring of the LWD piece (year AD/BC)<br>LastMesuredTreeRing = Date of the last measured tree-ring of the LWD piece (year AD/BC)<br>Burial = Burial type of the LWD piece<br>Diameter = Diameter of the LWD piece (cm)<br>Length = Length of the LWD piece (cm)<br>Volume = Volume of the LWD piece (m^3)<br>Distance = Minimum distance from the shore of the LWD piece (cm)<br>Depth = Minimum depth in the water of the LWD piece (feet)<br>BurialType = Burial type of the LWD piece (completely buried =3; partly buried =2; exposed =1)<br>Substratum = The type of underlying substratum (fine sediments =5; sand =4; gravel =3; stones =2; wood =1)<br>Aspect = The aspect of the corresponding littoral zone (from 0 to 2)<br>Exposure = The exposure to the wave action of the littoral zone (cm)<br>Orientation2 = Orientation relative to the shoreline of the LWD piece (perpendicular =3; parallel =2; inverted=1) Further details can be found in the published article.
DOI: 10.6084/m9.figshare.827246.v1
title: Calculate posterior probability of association conditional on association in related disease

description: This repository contains R code used to perform numerical calculations exploring the appropriate p value thresholds for calling genetic association in one disease given genomewide significant genetic association at the same SNP in a related disease. -Runme.sh is the file used to call the R code - functions.R contains various functions - simulations.R performs the calculations - plot.R generates summary plots
DOI: 10.6084/m9.figshare.827280.v5
title: Morphological phylogeny of Asilidae by Dikow 2009

description: Digital illustrations (vector graphics in .svg-format) of morphological hypotheses of phylogenetic relationships (cladograms) within Asilidae. Digital illustrations of morphological features of Asilidae.
DOI: 10.6084/m9.figshare.826087
title: E. imbricata flipper and underwater photographs (Abrolhos and São Pedro São Paulo Archipelagos, Brazil, 2010-2011)

description: This fileset contains photos (.jpg) of hawksbill turtle flippers upon capture, and subsequent underwater observations. It is intended to aid in the development of softwares for sea turtle photo-id. Photos are named as "location_individual number_photo type". Locations: AB = Abrolhos, SP = São Pedro São Paulo. Photo type: LF = Left flipper, RF = right flipper, U = underwater observations (e.g. AB_8_LF corresponds to a photo taken at Abrolhos, of individual 8, Left Flipper). Some individuals were photographed more than once underwater, and photos are numbered as U1, U2, U3, etc.
DOI: 10.6084/m9.figshare.826206
title: Data from: Understanding Evolutionary Potential in Virtual CPU Instruction Set Architectures

description: We investigate fundamental decisions in the design of instruction set architectures for linear genetic programs that are used as both model systems in evolutionary biology and underlying solution representations in evolutionary computation. Using the Avida digital evolution research platform, we subjected populations of organisms implemented with each test architecture to seven different computational environments designed to present a range of evolutionary challenges. We evaluated six different types of architectural features for the virtual CPUs: (1) genetic flexibility: we enhanced the ability of digital organisms to specify how a genetic instruction should function using modifier instructions, (2) memory: we provided an increased number of registers in the virtual CPUs, (3) decoupled sensors and actuators: separated input and output operations that enable greater flexibility in the control of data flow. We also tested a variety of methods to regulate expression: (4) explicit genome labels that allow programs to dynamically refer to specific positions in the genome, (5) position relative search instructions, and (6) multiple new flow control instructions, including conditionals and jump instructions. Each of these features also adds additional complication to the instruction set and runs the risk of slowing down evolution due to epistatic interactions. Indeed not all modifications turned out to be beneficial. However, we found that two features (multiple argument specification and separated I/O) demonstrated substantial improvements in the majority of test environments, along with versions of each of the remaining architecture modifications that show significant improvements in multiple environments. In most remaining instances, evolution proved to be robust to tested changes, exhibiting equivalent potential across numerous modifications. Combined, these observations enhance our understanding of how instruction architecture impacts evolutionary potential, enabling the creation of architectures that support more rapid evolution of complex solutions to a broad range of environmental challenges.
DOI: 10.6084/m9.figshare.826206.v1
title: Data from: Understanding Evolutionary Potential in Virtual CPU Instruction Set Architectures

description: We investigate fundamental decisions in the design of instruction set architectures for linear genetic programs that are used as both model systems in evolutionary biology and underlying solution representations in evolutionary computation. Using the Avida digital evolution research platform, we subjected populations of organisms implemented with each test architecture to seven different computational environments designed to present a range of evolutionary challenges. We evaluated six different types of architectural features for the virtual CPUs: (1) genetic flexibility: we enhanced the ability of digital organisms to specify how a genetic instruction should function using modifier instructions, (2) memory: we provided an increased number of registers in the virtual CPUs, (3) decoupled sensors and actuators: separated input and output operations that enable greater flexibility in the control of data flow. We also tested a variety of methods to regulate expression: (4) explicit genome labels that allow programs to dynamically refer to specific positions in the genome, (5) position relative search instructions, and (6) multiple new flow control instructions, including conditionals and jump instructions. Each of these features also adds additional complication to the instruction set and runs the risk of slowing down evolution due to epistatic interactions. Indeed not all modifications turned out to be beneficial. However, we found that two features (multiple argument specification and separated I/O) demonstrated substantial improvements in the majority of test environments, along with versions of each of the remaining architecture modifications that show significant improvements in multiple environments. In most remaining instances, evolution proved to be robust to tested changes, exhibiting equivalent potential across numerous modifications. Combined, these observations enhance our understanding of how instruction architecture impacts evolutionary potential, enabling the creation of architectures that support more rapid evolution of complex solutions to a broad range of environmental challenges.
DOI: 10.6084/m9.figshare.826004
title: Gaussian Job Archive for C26H30O7

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.826004.v1
title: Gaussian Job Archive for C26H30O7

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.827280.v6
title: Morphological phylogeny of Asilidae by Dikow 2009

description: Digital illustrations (vector graphics in .svg-format) of morphological hypotheses of phylogenetic relationships (cladograms) within Asilidae. Digital illustrations of morphological features of Asilidae.
DOI: 10.6084/m9.figshare.825956
title: Geoindex JISC UK Web Domain Dataset (1996-2010) E17 postcodes 1996-2001

description: Postcode data for London E17 (Walthamstow) was selected from the Geoindex for years 1996-2001. Data contains postcode, year of archive timestamp and link to archive instance on archive.org's wayback machine About the Geoindex http://dx.doi.org/10.5259/ukwa.ds.2/geo/1 The ~2.5 billion 200 OK responses in the JISC UK Web Domain Dataset (1996-2010) dataset have been scanned for geographic references - specifically postcodes. This set of postcode citations, found at particular URLs, crawled at particular times, forms an historical geoindex of the UK web. For more details about how the data was created, its format, and how to use it, see here. The geoindex is composed of some 700,641,549 lines of TSV data, each asserting that a given web page, crawled at a given data, contained one or more references to a given postcode.
DOI: 10.6084/m9.figshare.825964
title: Greenland bedrock, ice thickness and surface elevation

description: Bedrock and other data as described and published in the paper: Bamber, J. L., et al. (2013), A new bed elevation dataset for Greenland, The Cryosphere, 7(2), 499-510. The file is zipped and is in netcdf format. If you would prefer it as a geotiff, this is also available on request to j.bamber@bristol.ac.uk
DOI: 10.6084/m9.figshare.826003
title: Gaussian Job Archive for C20H26O7

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.825964.v1
title: Greenland bedrock, ice thickness and surface elevation

description: Bedrock and other data as described and published in the paper: Bamber, J. L., et al. (2013), A new bed elevation dataset for Greenland, The Cryosphere, 7(2), 499-510. The file is zipped and is in netcdf format. If you would prefer it as a geotiff, this is also available on request to j.bamber@bristol.ac.uk
DOI: 10.6084/m9.figshare.826003.v1
title: Gaussian Job Archive for C20H26O7

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.826087.v1
title: E. imbricata flipper and underwater photographs (Abrolhos and São Pedro São Paulo Archipelagos, Brazil, 2010-2011)

description: This fileset contains photos (.jpg) of hawksbill turtle flippers upon capture, and subsequent underwater observations. It is intended to aid in the development of softwares for sea turtle photo-id. Photos are named as "location_individual number_photo type". Locations: AB = Abrolhos, SP = São Pedro São Paulo. Individual number: number of the captured turtle. Photo type: LF = Left flipper, RF = right flipper, U1...X = underwater observations (e.g. AB_8_LF corresponds to a photo taken at Abrolhos, of individual 8, Left Flipper). Some individuals were photographed more than once underwater. All photos of the same individual present the same individual number, varying only the photo type. This data has not yet been published.