cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20056455
title: Additional file 9 of Comprehensive identification of RNA transcripts and construction of RNA network in chronic obstructive pulmonary disease

description: Additional file 9. 396 gene sets significantly enriched at nominal p-value ≤1% in GSEA analysis.
DOI: 10.6084/m9.figshare.21629433
title: Additional file 4 of Expanding known viral diversity in plants: virome of 161 species alongside an ancient canal

description: Additional file 4. Table S2: Information of viruses with complete genomes determined in the present study.
DOI: 10.6084/m9.figshare.21629187.v1
title: Additional file 4 of Integrated metabolomics, network pharmacology and biological verification to reveal the mechanisms of Nauclea officinalis treatment of LPS-induced acute lung injury

description: Additional file 4: Targets information of DM.
DOI: 10.6084/m9.figshare.14292487.v2
title: A Generalized Framework of Optimal Two-Stage Designs for Exploratory Basket Trials

description: The primary goal of an exploratory oncology clinical trial is to identify an effective drug for further development. To expedite the drug development process and increase the chance of finding active tumor indications where the treatment works, multiple tumor cohorts are often investigated simultaneously in a basket trial. In this article, we propose a generalized framework of an optimal basket trial design in the exploratory setting where tumor indications can be homogeneous (objective response rates of all indications are the same under both the null and alternative hypotheses) or heterogeneous (objective response rates are not the same under at least one of the null or alternative hypotheses). The proposed design prunes the inactive tumor indication in Stage 1 and pools the remaining tumor indications at the end of Stage 2 to evaluate the overall effectiveness of whether the treatment works in at least one tumor indication. The design parameters are optimized to minimize the expected sample size while explicitly controlling the global Type I and Type II error rates. In addition, we consider reallocating the planned Stage 2 sample size of pruned indications to achieve a higher power when the total planned sample size is fixed. Simulation studies are conducted to show the favorable operating characteristics of the proposed design under certain scenarios.
DOI: 10.6084/m9.figshare.21629388.v1
title: Additional file 6 of NLRP3 inflammasome regulates astrocyte transformation in brain injury induced by chronic intermittent hypoxia

description: Additional file 6: Table S1. The primer sequences uesd in RT-qPCR.
DOI: 10.6084/m9.figshare.20056597.v1
title: Additional file 1 of Essential role for STAT3/FOXM1/ATG7 signaling-dependent autophagy in resistance to Icotinib

description: Additional file 1.
DOI: 10.5281/zenodo.10611796
title: SEAO datasets - raw and cleaned datasets

description: Public auction data from the SEAO in the province of Quebec, Canada. Those are the data used in the study: Implementing a Hierarchical Deep Learning Approach for Simulating multilevel Auction Data (I. Sadoune, M. Joanis, A. Lodi, 2023).
DOI: 10.5281/zenodo.10649028
title: SEAO datasets - raw and cleaned datasets

description: Public auction data from the SEAO in the province of Quebec, Canada. Those are the data used in the study: Implementing a Hierarchical Deep Learning Approach for Simulating multilevel Auction Data (I. Sadoune, M. Joanis, A. Lodi, 2023).
DOI: 10.5281/zenodo.8274019
title: SEAO datasets - raw and cleaned datasets

description: Public auction data from the SEAO in the province of Quebec, Canada. Those are the data used in the study: Implementing a Hierarchical Deep Learning Approach for Simulating multilevel Auction Data (I. Sadoune, M. Joanis, A. Lodi, 2023).
DOI: 10.5281/zenodo.8274020
title: SEAO datasets - raw and cleaned datasets

description: Public auction data from the SEAO in the province of Quebec, Canada. Those are the data used in the study: Implementing a Hierarchical Deep Learning Approach for Simulating multilevel Auction Data (I. Sadoune, M. Joanis, A. Lodi, 2023).
DOI: 10.6084/m9.figshare.20059872
title: No rebound effect after a course of clopidogrel in patients with acute TIA or minor stroke

description: Previous studies demonstrated that discontinuation of clopidogrel in patients after ACS was associated with a rebound increase in risk of recurrent events. In this study, we aimed to investigate the rebound effect after discontinuation of clopidogrel therapy in patients with TIA or stroke. All patients with minor stroke or TIA were recruited from the Clopidogrel in High-Risk Patients With Acute Nondisabling Cerebrovascular Events (CHANCE) trial. Patients were divided into two groups: patients who discontinued clopidogrel and switched to aspirin therapy   (Clopidogrel Discontinuation Group) and patients who continued one mono-antiplatelet therapy (non-Clopidogrel Discontinuation Group) during 90-180  days. The outcomes included risks of recurrent ischemic stroke, recurrent TIA, and composite events during 90-180  days. The prevalence of each outcome was compared between two groups for every 30 days. Further subgroup analysis was conducted in patients with and without CYP2C19 loss-of-function alleles. Among the 3456 patients included, a total of 10 patients in the Clopidogrel Discontinuation Group and 11 patients in the non-Clopidogrel Discontinuation Group presented ischemic stroke recurrence during the 90–180-day period. The inter-group comparisons were not significant in each 30 days. Similar results were found for recurrent stroke, recurrent TIA, and composite events in these two groups, which were also found in CYP2C19 subgroup analysis. No rebound increase in the risk of ischemic stroke and composite events was found during the 90 days after discontinuation of clopidogrel therapy in patients with TIA or minor stroke in the CHANCE trial. clinicaltrials.gov Identifier: NCT00979589
DOI: 10.6084/m9.figshare.20059872.v1
title: No rebound effect after a course of clopidogrel in patients with acute TIA or minor stroke

description: Previous studies demonstrated that discontinuation of clopidogrel in patients after ACS was associated with a rebound increase in risk of recurrent events. In this study, we aimed to investigate the rebound effect after discontinuation of clopidogrel therapy in patients with TIA or stroke. All patients with minor stroke or TIA were recruited from the Clopidogrel in High-Risk Patients With Acute Nondisabling Cerebrovascular Events (CHANCE) trial. Patients were divided into two groups: patients who discontinued clopidogrel and switched to aspirin therapy   (Clopidogrel Discontinuation Group) and patients who continued one mono-antiplatelet therapy (non-Clopidogrel Discontinuation Group) during 90-180  days. The outcomes included risks of recurrent ischemic stroke, recurrent TIA, and composite events during 90-180  days. The prevalence of each outcome was compared between two groups for every 30 days. Further subgroup analysis was conducted in patients with and without CYP2C19 loss-of-function alleles. Among the 3456 patients included, a total of 10 patients in the Clopidogrel Discontinuation Group and 11 patients in the non-Clopidogrel Discontinuation Group presented ischemic stroke recurrence during the 90–180-day period. The inter-group comparisons were not significant in each 30 days. Similar results were found for recurrent stroke, recurrent TIA, and composite events in these two groups, which were also found in CYP2C19 subgroup analysis. No rebound increase in the risk of ischemic stroke and composite events was found during the 90 days after discontinuation of clopidogrel therapy in patients with TIA or minor stroke in the CHANCE trial. clinicaltrials.gov Identifier: NCT00979589
DOI: 10.6084/m9.figshare.20580941.v1
title: Additional file 12 of RNA sequencing reveals dynamic expression of lncRNAs and mRNAs in caprine endometrial epithelial cells induced by Neospora caninum infection

description: Additional file 12: Data S10. The trans-target genes predicted for differentially expressed lncRNAs (DElncRNAs).
DOI: 10.6084/m9.figshare.20056643
title: Additional file 1 of MicroRNA expression profile of chicken cecum in different stages during Histomonas meleagridis infection

description: Additional file 1: Table S1. Differentially expressed miRNAs between CE and CC samples
DOI: 10.6084/m9.figshare.20056646
title: Additional file 2 of MicroRNA expression profile of chicken cecum in different stages during Histomonas meleagridis infection

description: Additional file 2: Table S2. Differentially expressed miRNAs between CEH and CCH samples
DOI: 10.6084/m9.figshare.14292487.v1
title: A Generalized Framework of Optimal Two-stage Designs for Exploratory Basket Trials

description: The primary goal of an exploratory oncology clinical trial is to identify an effective drug for further development. To expedite the drug development process and increase the chance of finding active tumor indications where the treatment works, multiple tumor cohorts are often investigated simultaneously in a basket trial. In this article, we extend the optimal basket trial design in Zhou et al. (2019) and propose a generalized framework of an optimal basket trial design in the exploratory setting where tumor indications can be homogeneous (objective response rates of all indications are the same under both the null and alternative hypotheses) or heterogeneous (objective response rates are not the same under at least one of the null or alternative hypotheses). The proposed design prunes the inactive tumor indication in stage 1 and pools the remaining tumor indications at the end of stage 2 to evaluate the overall effectiveness of whether the treatment works in at least one tumor indication. The design parameters are optimized to minimize the expected sample size while explicitly controlling the global type I and type II error rates. In addition, we consider reallocating the planned stage 2 sample size of pruned indications to achieve a higher power when the total planned sample size is fixed. Simulation studies are conducted to show the favorable operating characteristics of the proposed design under certain scenarios.
DOI: 10.6084/m9.figshare.20056646.v1
title: Additional file 2 of MicroRNA expression profile of chicken cecum in different stages during Histomonas meleagridis infection

description: Additional file 2: Table S2. Differentially expressed miRNAs between CEH and CCH samples
DOI: 10.6084/m9.figshare.20056643.v1
title: Additional file 1 of MicroRNA expression profile of chicken cecum in different stages during Histomonas meleagridis infection

description: Additional file 1: Table S1. Differentially expressed miRNAs between CE and CC samples
DOI: 10.6084/m9.figshare.20580938.v1
title: Additional file 11 of RNA sequencing reveals dynamic expression of lncRNAs and mRNAs in caprine endometrial epithelial cells induced by Neospora caninum infection

description: Additional file 11: Data S9. The cis-target genes predicted for differentially expressed lncRNAs (DElncRNAs).
DOI: 10.6084/m9.figshare.20056652.v1
title: Additional file 4 of MicroRNA expression profile of chicken cecum in different stages during Histomonas meleagridis infection

description: Additional file 4: Table S4. KEGG pathways of target genes of DEMs obtained from the samples at 10 and 15 DPI
DOI: 10.25402/fon.20060186
title: Supplementary Table – Adjuvant EGFR tyrosine kinase inhibitors forpatients with resectedEGFR-mutatednon-small-cell lung cancer: a networkmeta-analysis

description: Table 1: Characteristics of included studies
DOI: 10.25402/fon.20060186.v1
title: Supplementary Table – Adjuvant EGFR tyrosine kinase inhibitors forpatients with resectedEGFR-mutatednon-small-cell lung cancer: a networkmeta-analysis

description: Table 1: Characteristics of included studies
DOI: 10.34808/qncr-rh83
title: Stability of steel plate girder with alternative web geometry

description: The main aim of this study is to determine the influence of an alternative geometry of plate girder cross-section on web stability. The proposed modification of geometry consists in application of a variable web thicknesses along its height in order to reduce the number of transverse and longitudinal stiffeners along the length of the plate girder. The following research hypothesis was assumed: increasing the thickness of the compressed web zone of the plate girder will significantly increase its stability, leading to a reduction in the number of transverse and longitudinal stiffeners.The presented data concern experimental tests: 9 research models of plate girders with stepwise variable web thickness and 1 model of a plate girder with constant web thickness, subjected to four-point bending. During the research, the following were measured:- values of the applied force,- strains (7 measurement points: 4 on the chords under concentrated forces (T1, T2, T6, T7), 3 on the web in the middle of the beam span (T3, T4, T5),- displacements (2 measurement points (i1, i2): under the places of application of concentrated forces).
DOI: 10.6084/m9.figshare.7477289
title: Additional file 1: of The repeatability of superficial retinal vessel density measurements in eyes with long axial length using optical coherence tomography angiography

description: Table S1. Raw data of OCTA measurements. This file includes VLD, PD and FAZ values for 3 × 3 mm and 6 × 6 mm scans of all the subjects in this study. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.7477289.v1
title: Additional file 1: of The repeatability of superficial retinal vessel density measurements in eyes with long axial length using optical coherence tomography angiography

description: Table S1. Raw data of OCTA measurements. This file includes VLD, PD and FAZ values for 3 × 3 mm and 6 × 6 mm scans of all the subjects in this study. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.20056652
title: Additional file 4 of MicroRNA expression profile of chicken cecum in different stages during Histomonas meleagridis infection

description: Additional file 4: Table S4. KEGG pathways of target genes of DEMs obtained from the samples at 10 and 15 DPI
DOI: 10.6084/m9.figshare.20056649.v1
title: Additional file 3 of MicroRNA expression profile of chicken cecum in different stages during Histomonas meleagridis infection

description: Additional file 3: Table S3. T cell related GO terms of target genes of DEMs obtained from the samples at 10 and 15 DPI
DOI: 10.6084/m9.figshare.20056655
title: Additional file 5 of MicroRNA expression profile of chicken cecum in different stages during Histomonas meleagridis infection

description: Additional file 5: Table S5. Differentially expressed miRNAs induced by H. meleagridis at 10 DPI regulating the gene expression in Hedgehog signaling pathway
DOI: 10.15468/dl.k5dtm8
title: Occurrence Download

description: A dataset containing 688 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trypoxylus Minck, 1920"
 ]
}

 The dataset includes 688 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0298952-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffwqgr
title: Occurrence Download

description: A dataset containing 9570 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dioscorea bulbifera L."
 ]
}

 The dataset includes 9570 records from 282 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0311069-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4596yh
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-107.44629 13.00781,-86.08887 13.00781,-86.08887 24.52148,-107.44629 24.52148,-107.44629 13.00781))",
 "HasCoordinate is true",
 "TaxonKey is Canoparmelia caroliniana (Nyl.) Elix & Hale"
 ]
}

 The dataset includes 48 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062306-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yheja5
title: Occurrence Download

description: A dataset containing 33116 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sula nebouxii Milne-Edwards, 1882"
 ]
}

 The dataset includes 33116 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230745-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nxbfz7
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Eragrostiella brachyphylla (Stapf) Bor"
 ]
}

 The dataset includes 31 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0306968-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u2na6m
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Lithuania",
 "TaxonKey is Salix myrsinifolia Salisb."
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0316654-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yvd2pa
title: Occurrence Download

description: A dataset containing 259029 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus pinea L."
 ]
}

 The dataset includes 259029 records from 202 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081847-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4t45qp
title: Occurrence Download

description: A dataset containing 1318 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((0.36977 40.35659,7.39739 40.35659,7.39739 43.16909,0.36977 43.16909,0.36977 40.35659))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Felis silvestris Schreber, 1777"
 ]
}

 The dataset includes 1318 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230760-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tcaqz4
title: Occurrence Download

description: A dataset containing 297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aletris glabra Bureau & Franch.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 297 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0321707-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pgjund
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus tiaoloshanica Chun & W.C.Ko"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069930-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ccugtf
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ajuga ovalifolia Bureau & Franch.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 102 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0321701-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wmy35n
title: Occurrence Download

description: A dataset containing 386 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rubus ellipticus var. obcordatus (Franch.) Focke"
 ]
}

 The dataset includes 386 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0170176-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fveftt
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Elymandra lithophila (Trin.) Clayton"
 ]
}

 The dataset includes 8 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0294706-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ub3wmg
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus xanthotricha A.Camus"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069937-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9umn9s
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Corydalis meifolia Wall.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 24 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0322085-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6jmc4g
title: Occurrence Download

description: A dataset containing 324 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "TaxonKey is Geonoma congesta H.Wendl. ex Spruce"
 ]
}

 The dataset includes 324 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239883-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gwyr9b
title: Occurrence Download

description: A dataset containing 1012 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Opuntia streptacantha Lem."
 ]
}

 The dataset includes 1012 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071995-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.