cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10652265
title: Testing δ^18 O and δ^2 H isoscapes in the hyperarid Atacama Desert

description: Spatial models of variations in the stable isotopic composition (isoscapes) of water resources have become a key tool to portray factors influencing the hydrological cycle across the landscape. Although isoscapes could contribute significantly to the water management of water resources in different environmental contexts, the performance of interpolation methods should be addressed in the light of the data structure, but also of topographic complexities. Here, we evaluated the influence of low-density data and abrupt and rugged relief on the performance of geostatistical (ordinary kriging - OK) and mechanistic (Inverse Distance Weighted -IDW) interpolation methods in estimating spatial variations in   and   values of meteoric waters across the western slope of the Andes (17.5º-24.5ºS). Specifically, we focused on the Atacama Desert -the world´s driest desert-. That is, we generated a regional database that gathers pre-existing and novel stable oxygen and hydrogen isotope measurements of regional meteoric waters. The irregular spatial distribution of these data led us to test the performance of interpolators by generating independent oxygen and hydrogen isoscapes for two distinct zones within our study area: Zone I (18°S-21°S) and Zone II (22º-24ºS). These zones were defined according to the density of oxygen and hydrogen stable isotopic data. Our results point to a higher performance of the IDW interpolator compared to OK approaches. We indeed evince that the IDW isoscapes capture quite well the predictable elevation effect on the distribution of oxygen and hydrogen stable isotope values across the southern portion of the Zone I, but also distinct isotopic enrichments over Altiplano basins as well as the coastal area of both hydrological zones. This method, however, fails in predicting the elevational distribution of 18O/16O and 2H/1H ratios over the northern Zone I and the entire Zone II due to the irregular spatial distribution of data. Although such limitations exist, the IDW interpolator appears as the best tool for generating oxygen and hydrogen isoscapes in our study area. This is consistent with other studies demonstrating that IDW is a superior interpolator when dealing with spatially uneven grids. In this sense, we challenge the prevailing notion that the geostatistical OK approach is invariably the most effective technique for spatial analyses of stable isotopes, and in turn the default method to implement isoscapes.
DOI: 10.5281/zenodo.10689345
title: Testing δ^18 O and δ^2 H isoscapes in the hyperarid Atacama Desert

description: Spatial models of variations in the stable isotopic composition (isoscapes) of water resources have become a key tool to portray factors influencing the hydrological cycle across the landscape. Although isoscapes could contribute significantly to the water management of water resources in different environmental contexts, the performance of interpolation methods should be addressed in the light of the data structure, but also of topographic complexities. Here, we evaluated the influence of low-density data and abrupt and rugged relief on the performance of geostatistical (ordinary kriging - OK) and mechanistic (Inverse Distance Weighted -IDW) interpolation methods in estimating spatial variations in   and   values of meteoric waters across the western slope of the Andes (17.5º-24.5ºS). Specifically, we focused on the Atacama Desert -the world´s driest desert-. That is, we generated a regional database that gathers pre-existing and novel stable oxygen and hydrogen isotope measurements of regional meteoric waters. The irregular spatial distribution of these data led us to test the performance of interpolators by generating independent oxygen and hydrogen isoscapes for two distinct zones within our study area: Zone I (18°S-21°S) and Zone II (22º-24ºS). These zones were defined according to the density of oxygen and hydrogen stable isotopic data. Our results point to a higher performance of the IDW interpolator compared to OK approaches. We indeed evince that the IDW isoscapes capture quite well the predictable elevation effect on the distribution of oxygen and hydrogen stable isotope values across the southern portion of the Zone I, but also distinct isotopic enrichments over Altiplano basins as well as the coastal area of both hydrological zones. This method, however, fails in predicting the elevational distribution of 18O/16O and 2H/1H ratios over the northern Zone I and the entire Zone II due to the irregular spatial distribution of data. Although such limitations exist, the IDW interpolator appears as the best tool for generating oxygen and hydrogen isoscapes in our study area. This is consistent with other studies demonstrating that IDW is a superior interpolator when dealing with spatially uneven grids. In this sense, we challenge the prevailing notion that the geostatistical OK approach is invariably the most effective technique for spatial analyses of stable isotopes, and in turn the default method to implement isoscapes.
DOI: 10.6084/m9.figshare.25262485
title: Supplement data for paper: Learning interpretable dynamics of stochastic complex systems from experimental data

description: Data for comparison study.
DOI: 10.6084/m9.figshare.25262485.v1
title: Supplement data for paper: Learning interpretable dynamics of stochastic complex systems from experimental data

description: Data for comparison study.
DOI: 10.5281/zenodo.10689079
title: Australian Landscape Water Balance AWRA-L Model - root-zone soil moisture

description: Data downloaded from Australian Water Outlook (bom.gov.au)

Here the xarray output:

Dimensions:      (time: 1357, latitude: 681, longitude: 841, nv: 2)Coordinates:  * time         (time) datetime64[ns] 1911-01-31 1911-02-28 ... 2024-01-31  * latitude     (latitude) float64 -10.0 -10.05 -10.1 ... -43.9 -43.95 -44.0  * longitude    (longitude) float64 112.0 112.0 112.1 ... 153.9 153.9 154.0Dimensions without coordinates: nvData variables:    time_bounds  (time, nv) datetime64[ns] ...    sm_pct       (time, latitude, longitude) float32 ...Attributes:    var_name:       sm_pct    title:          Australian Landscape Water Balance AWRA-L Model    Description:    This data is provided by the Bureau of Meteorology and ca...    summary:        Data produced by Bureau of Meteorology Australian Water R...    source:         AWRA-L    date_created:   2021-09-20T00:48:31    Conventions:    CF-1.6, ACDD-1.3    institution:    Bureau of Meteorology    email:          awrams@bom.gov.au    url:            http://www.bom.gov.au/water/landscape    date_modified:  2021-09-20T00:48:31
DOI: 10.5281/zenodo.10689080
title: Australian Landscape Water Balance AWRA-L Model - root-zone soil moisture

description: Data downloaded from Australian Water Outlook (bom.gov.au)

Here the xarray output:

Dimensions:      (time: 1357, latitude: 681, longitude: 841, nv: 2)Coordinates:  * time         (time) datetime64[ns] 1911-01-31 1911-02-28 ... 2024-01-31  * latitude     (latitude) float64 -10.0 -10.05 -10.1 ... -43.9 -43.95 -44.0  * longitude    (longitude) float64 112.0 112.0 112.1 ... 153.9 153.9 154.0Dimensions without coordinates: nvData variables:    time_bounds  (time, nv) datetime64[ns] ...    sm_pct       (time, latitude, longitude) float32 ...Attributes:    var_name:       sm_pct    title:          Australian Landscape Water Balance AWRA-L Model    Description:    This data is provided by the Bureau of Meteorology and ca...    summary:        Data produced by Bureau of Meteorology Australian Water R...    source:         AWRA-L    date_created:   2021-09-20T00:48:31    Conventions:    CF-1.6, ACDD-1.3    institution:    Bureau of Meteorology    email:          awrams@bom.gov.au    url:            http://www.bom.gov.au/water/landscape    date_modified:  2021-09-20T00:48:31
DOI: 10.15131/shef.data.23592243
title: Anonymised interview extracts for "Producing locally causal explanations in qualitative research by using a realist phenomenological methodology"

description: Anonymised extracts from two separate interivews which took place as part of a PhD project which addresses the relationship between memorialisation and identity. Parts of these interview extracts are included in an article that will be submitted to the International Journal of Qualitative Methods. <br> Ethical Approval This study was approved by the University Research Ethics Committee at Sheffield Hallam University with Converis number ER20897730. The PhD study which the interview extracts derive from commenced at Sheffield Hallam University in October 2019, where the project gained ethical approval. In September 2021, the PhD project was transferred to the University of Sheffield.
DOI: 10.5281/zenodo.10689524
title: Functional annotation of the reference transcriptome for Prorocentrum texanum var. cuspidatum

description: De novo transcriptomes generated using both Trinity and velvet-oases were merged with CD-HIT-EST to reduce the transcript redundancy to 90% similarity and generate unique genes. Functional annotation was performed using DIAMOND blastp function (Buchfink et al. 2021).
DOI: 10.5281/zenodo.10689525
title: Functional annotation of the reference transcriptome for Prorocentrum texanum var. cuspidatum

description: De novo transcriptomes generated using both Trinity and velvet-oases were merged with CD-HIT-EST to reduce the transcript redundancy to 90% similarity and generate unique genes. Functional annotation was performed using DIAMOND blastp function (Buchfink et al. 2021).
DOI: 10.6084/m9.figshare.25127465.v1
title: fig_7_12.dta

description: Dataset for figures
DOI: 10.6084/m9.figshare.25127465
title: fig_7_12.dta

description: Dataset for figures
DOI: 10.6069/uwlswd.brtx-qb17
title: Electronic resource: antecedent/source
title: MARC21 007/11 values for electronic resources expressed using RDF

description: Information about the source of a digital file important to the
 creation, use and management of digitally reformatted materials.
DOI: 10.15131/shef.data.21739733
title: Registration inputs

description: Registration inputs for the paper titled: Deformable image registration based on single or multi-atlas methods for automatic muscle segmentation and the generation of augmented imaging datasets <br> fixed (red channel), moving (green channel), and fixed segmentations (blue channel) are combined in one easy to use 3D dicom file. There are 20 combinations presented, with each of 5 subjects used as both the fixed and the moving subject. <br> The results.xcel file highlights the numerical results for the automatic segmentation we found using an in house registration toolkit. If one would like to test others, simply download and register the fixed and moving images, and apply the deformation to the blue channel segmentations. <br> <br> <br> See read me for details.
DOI: 10.15131/shef.data.21739733.v3
title: Registration inputs for: Deformable image registration based on single or multi-atlas methods for automatic muscle segmentation and the generation of augmented imaging datasets

description: Fixed (red channel), moving (green channel), and fixed segmentations (blue channel) are combined in one easy to use 3D dicom file. There are 20 combinations presented, with each of 5 subjects used as both the fixed and the moving subject.
<br>
The results.xcel file highlights the numerical results for the automatic segmentation we found using an in house registration toolkit. If one would like to test others, simply download and register the fixed and moving images, and apply the deformation to the blue channel segmentations. 
<br>
<br>
<br>
See read me for details.
DOI: 10.15131/shef.data.21739733.v2
title: Registration inputs

description: Registration inputs for the paper titled: Deformable image registration based on single or multi-atlas methods for automatic muscle segmentation and the generation of augmented imaging datasets
<br>
fixed (red channel), moving (green channel), and fixed segmentations (blue channel) are combined in one easy to use 3D dicom file. There are 20 combinations presented, with each of 5 subjects used as both the fixed and the moving subject.
<br>
The results.xcel file highlights the numerical results for the automatic segmentation we found using an in house registration toolkit. If one would like to test others, simply download and register the fixed and moving images, and apply the deformation to the blue channel segmentations. 
<br>
<br>
<br>
See read me for details.
DOI: 10.5281/zenodo.10606985
title: Limits to Knickzone Retreat and Bedrock River Incision on the Hawaiian Islands: Knickzone Data

description: This spreadsheet contains results from analysis of knickzone location on the Hawaiian Islands. Data includes, name, location, drainage area above knickzones (Akz, m2), catchment drainage area (A, m2), maximum possible stream power (OmegaM, watt/m2) above knickzones (details provided in the accompanying paper), channel gradient and volcano gradient above knickzones (Sc or Sv, respectively), retreat distance (D, m), and mean annual rainfall above knickzones (P, m/yr). The underlying data used for estimating P was obtained from the Rainfall atlas of Hawaii (http://rainfall.geography.hawaii.edu/) with citation provided below.

Frazier, A.G., Giambelluca, T.W., Diaz, H.F., Needham, H.L., 2016. Comparison of geostatistical approaches to spatially interpolate month-year rainfall for the Hawaiian Islands. Int. J. Climatol. 36, 1459–1470. https://doi.org/10.1002/joc.4437
DOI: 10.5281/zenodo.10606986
title: Limits to Knickzone Retreat and Bedrock River Incision on the Hawaiian Islands: Knickzone Data

description: This spreadsheet contains results from analysis of knickzone location on the Hawaiian Islands. Data includes, name, location, drainage area above knickzones (Akz, m2), catchment drainage area (A, m2), maximum possible stream power (OmegaM, watt/m2) above knickzones (details provided in the accompanying paper), channel gradient and volcano gradient above knickzones (Sc or Sv, respectively), retreat distance (D, m), and mean annual rainfall above knickzones (P, m/yr). The underlying data used for estimating P was obtained from the Rainfall atlas of Hawaii (http://rainfall.geography.hawaii.edu/) with citation provided below.

Frazier, A.G., Giambelluca, T.W., Diaz, H.F., Needham, H.L., 2016. Comparison of geostatistical approaches to spatially interpolate month-year rainfall for the Hawaiian Islands. Int. J. Climatol. 36, 1459–1470. https://doi.org/10.1002/joc.4437
DOI: 10.5519/qd.pamkis02
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (69 records)
DOI: 10.6069/uwlswd.4ee2-4t34
title: Electronic resource: color
title: MARC21 007/03 values for electronic resources expressed using RDF

description: Whether the item is one color or
 multicolored.
DOI: 10.6069/uwlswd.v463-4g79
title: Electronic resource: dimensions
title: MARC21 007/04 values for electronic resources expressed using RDF

description: Dimensions of the medium used to encode the electronic
 resource.
DOI: 10.5519/qd.1356uk9i
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (73 records)
DOI: 10.5519/qd.7u2d21e0
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (69 records)
DOI: 10.6069/uwlswd.s0ms-4p29
title: Electronic resouce: file formats
title: MARC21 007/09 values for electronic resources expressed using RDF

description: Whether the file(s) which comprise the electronic resource are
 of the same format or type for digitally reformatted materials.
DOI: 10.6084/m9.figshare.25262551
title: spirit-vs-mouz-m1-vertigo.dem

description: <b>PGL CS2 Major Copenhagen 2024 Europe RMR B (Spirit vs MOUZ, de_vertigo)</b>
DOI: 10.6084/m9.figshare.25262551.v1
title: spirit-vs-mouz-m1-vertigo.dem

description: <b>PGL CS2 Major Copenhagen 2024 Europe RMR B (Spirit vs MOUZ, de_vertigo)</b>
DOI: 10.6069/uwlswd.hwb2-j275
title: Electronic resource: level of compression
title: MARC21 007/12 values for electronic resources expressed using RDF

description: Kind of compression the electronic resource has been subjected
 to.
DOI: 10.25417/uic.25050515
title: Identification and characterization of a novel nematode pan allergen (NPA) Data

description: This study discovered and characterized a novel Nematode Pan Allergen involved in allergic reaction in subjects showing Tropical Pulmonary Eosinophilia.
<br>
Data associated with article:
 Katru, S. C., Balakrishnan, A. S., Munirathinam, G., Hadadianpour, A., Smith, S. A., & Kalyanasundaram, R. (2024). Identification and characterization of a novel nematode pan allergen (NPA) from Wuchereria bancrofti and their potential role in human filarial tropical pulmonary eosinophilia (TPE). <em>PLOS Neglected Tropical Diseases</em>, <em>18</em>(2), e0011972.   https://doi.org/10.1371/journal.pntd.0011972
DOI: 10.25417/uic.25050515.v1
title: Identification and characterization of a novel nematode pan allergen (NPA) Data

description: This study discovered and characterized a novel Nematode Pan Allergen involved in allergic reaction in subjects showing Tropical Pulmonary Eosinophilia.
<br>
Data associated with article:
 Katru, S. C., Balakrishnan, A. S., Munirathinam, G., Hadadianpour, A., Smith, S. A., & Kalyanasundaram, R. (2024). Identification and characterization of a novel nematode pan allergen (NPA) from Wuchereria bancrofti and their potential role in human filarial tropical pulmonary eosinophilia (TPE). <em>PLOS Neglected Tropical Diseases</em>, <em>18</em>(2), e0011972.   https://doi.org/10.1371/journal.pntd.0011972
DOI: 10.6084/m9.figshare.25262521
title: Key informant interview transcripts.docx

description: BackgroundNon-communicable diseases are highly prevalent among adults living with HIV, emphasizing the need for comprehensive healthcare strategies. However, a dearth of knowledge exists regarding the health system challenges in managing HIV and non-communicable diseases and the perception of health workers regarding the integrated management of non-communicable diseases in routine HIV care in rural Ugandan settings. This study aims to bridge this knowledge gap by exploring the health system challenges in managing HIV and non-communicable diseases and health workers’ perception regarding the integration of non-communicable diseases in routine HIV care in South Central Uganda.MethodsIn this qualitative study, we collected data from 20 purposively selected key informants from Kalisizo Hospital and Rakai Hospital in South Central Uganda. Data were collected from 15<sup>th</sup> December 2020 and 14<sup>th</sup> January 2021. Data were analyzed using a thematic content approach with the help of NVivo 11.ResultsOf the 20 health workers, 13 were females. In terms of work duration, 9 had worked with people living with HIV for 11-15 years and 9 were nurses. The challenges in managing HIV and non-communicable diseases included difficulty managing adverse events, heavy workload, inadequate communication from specialists to lower cadre health workers, limited financial and human resources, unsupportive clinical guidelines that do not incorporate non-communicable disease management in HIV care and treatment, and inadequate knowledge and skills required to appropriately manage non-communicable diseases. Health workers suggested integrating non-communicable disease management into routine HIV care and suggested the need for training before this integration.ConclusionThe integration of non-communicable disease management into routine HIV care presents a promising avenue for easing the burden on health workers handling these conditions. However, achieving successful integration requires not only the training of health workers but also ensuring the availability of sufficient human and financial resources.
DOI: 10.6069/uwlswd.k2b6-k011
title: Electronic resource: quality assurance targets
title: MARC21 007/10 values for electronic resources expressed using RDF

description: Whether quality assurance targets have been included
 appropriately at the time of reformatting/creation of the electronic resource. Targets are
 standard reference points which can be interpreted by a human or machine and used to
 measure resolution, color, faithfulness of representation to the original,
 etc.
DOI: 10.6069/uwlswd.8svz-r036
title: Electronic resource: reformatting quality
title: MARC21 007/13 values for electronic resources expressed using RDF

description: An overall assessment of the physical quality of the electronic
 resource in relation to its intended use.
DOI: 10.6084/m9.figshare.7216856
title: Additional file 9: of Genome-wide analysis of the basic Helix-Loop-Helix (bHLH) transcription factor family in maize

description: Table S7. Expression of ZmbHLH genes at different development stages of maize seed tissue. (XLSX 169 kb)
DOI: 10.6084/m9.figshare.7216856.v1
title: Additional file 9: of Genome-wide analysis of the basic Helix-Loop-Helix (bHLH) transcription factor family in maize

description: Table S7. Expression of ZmbHLH genes at different development stages of maize seed tissue. (XLSX 169 kb)
DOI: 10.6069/uwlswd.qpp2-sz54
title: Electronic resource: sound
title: MARC21 007/05 values for electronic resources expressed using RDF

description: Whether the production of sound is an integral part of an
 electronic resource.
DOI: 10.6084/m9.figshare.7216907
title: Additional file 1: of ABI3 and PLCG2 missense variants as risk factors for neurodegenerative diseases in Caucasians and African Americans

description: Table S1. Association Results with the Replication Controls. Table S2. Differential Gene Expression. Table S3. Microglial gene enriched co-expression network modules. Table S4. AD candidate risk genes in the microglial/innate immune module. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.7216907.v1
title: Additional file 1: of ABI3 and PLCG2 missense variants as risk factors for neurodegenerative diseases in Caucasians and African Americans

description: Table S1. Association Results with the Replication Controls. Table S2. Differential Gene Expression. Table S3. Microglial gene enriched co-expression network modules. Table S4. AD candidate risk genes in the microglial/innate immune module. (XLSX 28 kb)
DOI: 10.6073/pasta/d6f7d7f8f2b752dd3a41ba55e8a89c25
title: Fall 2022 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10

description: A quadrat survey was conducted in October 2022 to measure the species and size distribution of plants at 10 GCE LTER sampling sites. The quadrats were established as permanent plots at GCE sampling sites in October 2000 by placing wooden stakes at random locations across two nominal zones at each site, designated based on marsh structure (creekbank and high marsh). New plots were added each year as necessary to replace those lost due to catastrophic wrack disturbance or creek bank erosion. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in a separate data set (PLT-GCEM-1801). This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.