cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5722561
title: Causes of morbidity and mortality, and rehabilitation outcomes of birds in Gran Canaria Island, Spain

description: <b>Capsule</b>: Anthropogenic factors were identified as the main threats to wild birds in Gran Canaria. <b>Aims</b>: To analyse the causes of morbidity and mortality in a large sample of selected orders of birds admitted to the Tafira Wildlife Rehabilitation Centre (TWRC) in Gran Canaria over 11 years, and to analyse the outcomes of such rehabilitation. <b>Methods</b>: The records of 2390 birds were analysed. Ten primary causes of morbidity were identified: trauma, metabolic/nutritional disorder, orphaned young birds, infectious/parasitic disease, crude oil, poisoning/intoxication, glue trapping, captivity, other causes, and unknown/undetermined. The rates of the final outcome categories (euthanasia <i>E</i><sub>r</sub>, unassisted mortality <i>M</i><sub>r</sub>, release <i>R</i><sub>r</sub>, and permanent captivity <i>C</i><sub>r</sub>), the time until death, and the length of stay were studied. <b>Results</b>: The Eurasian Stone-curlew <i>Burhinus oedicnemus</i> was the species most frequently admitted (20.29%), followed by the Eurasian Blackbird <i>Turdus merula</i> (13.47%). The most frequent cause of morbidity was trauma (27.82%). The final outcomes of birds admitted alive were <i>E</i><sub>r </sub>= 16.69%, <i>M</i><sub>r </sub>= 26.53%, <i>R</i><sub>r </sub>= 54%, and <i>C</i><sub>r </sub>= 2.76%. <b>Conclusions</b>: This survey provides useful information for the conservation and welfare of these bird species. The successful release rate achieved at the TWRC emphasizes the importance of wildlife rehabilitation centres for the conservation of birds.
DOI: 10.6084/m9.figshare.5722561.v1
title: Causes of morbidity and mortality, and rehabilitation outcomes of birds in Gran Canaria Island, Spain

description: <b>Capsule</b>: Anthropogenic factors were identified as the main threats to wild birds in Gran Canaria. <b>Aims</b>: To analyse the causes of morbidity and mortality in a large sample of selected orders of birds admitted to the Tafira Wildlife Rehabilitation Centre (TWRC) in Gran Canaria over 11 years, and to analyse the outcomes of such rehabilitation. <b>Methods</b>: The records of 2390 birds were analysed. Ten primary causes of morbidity were identified: trauma, metabolic/nutritional disorder, orphaned young birds, infectious/parasitic disease, crude oil, poisoning/intoxication, glue trapping, captivity, other causes, and unknown/undetermined. The rates of the final outcome categories (euthanasia <i>E</i><sub>r</sub>, unassisted mortality <i>M</i><sub>r</sub>, release <i>R</i><sub>r</sub>, and permanent captivity <i>C</i><sub>r</sub>), the time until death, and the length of stay were studied. <b>Results</b>: The Eurasian Stone-curlew <i>Burhinus oedicnemus</i> was the species most frequently admitted (20.29%), followed by the Eurasian Blackbird <i>Turdus merula</i> (13.47%). The most frequent cause of morbidity was trauma (27.82%). The final outcomes of birds admitted alive were <i>E</i><sub>r </sub>= 16.69%, <i>M</i><sub>r </sub>= 26.53%, <i>R</i><sub>r </sub>= 54%, and <i>C</i><sub>r </sub>= 2.76%. <b>Conclusions</b>: This survey provides useful information for the conservation and welfare of these bird species. The successful release rate achieved at the TWRC emphasizes the importance of wildlife rehabilitation centres for the conservation of birds.
DOI: 10.6084/m9.figshare.5722549
title: Timelapse 2 - Maximum intensity projections

description: See accompanying word documents
DOI: 10.6084/m9.figshare.5722543
title: Timelapse 1 - raw confocal files

description: See accompanying word documents
DOI: 10.6084/m9.figshare.5722543.v1
title: Timelapse one - raw confocal files (upload in progress!)

description: See accompanying word documents
DOI: 10.6084/m9.figshare.5722543.v2
title: Timelapse one - raw confocal files (upload in progress!)

description: See accompanying word documents
DOI: 10.6084/m9.figshare.5722543.v3
title: Timelapse one - raw confocal files

description: See accompanying word documents
DOI: 10.6084/m9.figshare.5722543.v4
title: Timelapse 1 - raw confocal files

description: See accompanying word documents
DOI: 10.6084/m9.figshare.5722543.v6
title: Timelapse 1 - raw confocal files

description: See accompanying word documents
DOI: 10.6084/m9.figshare.5722543.v5
title: Timelapse 1 - raw confocal files

description: See accompanying word documents
DOI: 10.6084/m9.figshare.5722540
title: Word files with important information

description: Word files describing timelapses<br>
DOI: 10.6084/m9.figshare.5722537
title: Timelapse 1 - Maximum intensity projections

description: See accompanying word documents
DOI: 10.6084/m9.figshare.5722465
title: Wind erosion simulation

description: Simulation of wind erosion in a rotating frame
DOI: 10.6084/m9.figshare.5722537.v1
title: Timelapse one - Maximum intensity projections

description: See accompanying word documents
DOI: 10.6084/m9.figshare.5722465.v1
title: Wind erosion simulation

description: Simulation of wind erosion in a rotating frame
DOI: 10.6084/m9.figshare.5722438
title: Slides from Transparent meta-analysis and use of open-data workshop

description: These are slides from half a day workshop at the Open Science Tools, Data, and Technologies for Efficient Evolutionary and Ecological Research, 8th Dec 2017, AmsterdamMeta-analysis is a powerful statistical approach to integrate results from individual studies. It can be used to weight the evidence for a certain effect, and to test hypothesis about the strength and the direction of the effect.This workshop will introduce transparent meta-analysis, possiblities it offers to a research, as well as its limits. We will describe all the main steps needed to conduct a transparent and modern meta-analysis, and also use open (freely available online) data in meta-anlalysis. Thus, we will also introduce the new open data-landscape, and platforms where researchers can easily identify datasets (similar as, for example, Web of Science does for papers). Participants will have some time to familiarise themselves with these platforms.<strong>After completing the workshop, participants will be able to</strong>:1. Design answerable research question and define exact inclusion and exclusion criteria<br>2. Implement transparent and comprehensive data collection and extraction, including the aqusation of open-data<br>3. Decide on methods to critically assess the risk of bias<br>4. Decide on the most appropriate meta-analytical model (fixed/random effects, nested data structure)<br>5. Describe and interpret the results of meta-analysesRequerments:Pre-pare<em>Organiser/trainer</em>: Dr. Antica Culina, Netherlands Institute of Ecology (NIOO-KNAW)
DOI: 10.6084/m9.figshare.5722432
title: Common Redstart counts in Switzerland (with covariates)

description: Counts of the Common Redstart (Phoenicurus phoenicurus) from the Swiss Breeding Bird Atlas 1993-1996 (Schmid et al. 1998), where 2,716 one km squares were surveyed three times during 15 April - 30 June. Covariates values for the km squares are also included.<br>
DOI: 10.6084/m9.figshare.5722369
title: ilamb-ELMECA-data.zip

description: Representing nitrogen, phosphorus, and carbon interactions in the E3SM Land Model: Development and global benchmarking
DOI: 10.6084/m9.figshare.5722357
title: data.zip

description: for manuscript: Representing nitrogen, phosphorus, and carbon interactions in the E3SM Land Model: Development and global benchmarking
DOI: 10.6084/m9.figshare.5722357.v1
title: data.zip

description: for manuscript: Representing nitrogen, phosphorus, and carbon interactions in the E3SM Land Model: Development and global benchmarking
DOI: 10.18112/openneuro.ds003103.v1.0.0
title: Consensus-seeking and conflict-resolving: an fMRI study on college couples’ shopping interaction
DOI: 10.6084/m9.figshare.5722351
title: Urinary peptidomics in kidney disease and drug research

description: <b>Introduction</b>: Due to its close connection with the renal system, urine is considered a valuable source of information in kidney disease research. Peptidomics methods focus on the discovery of endogenous peptides, given their wide range of biological functions and diagnostic and therapeutic potential. Representing a non-invasive and sensitive method, technological prospects of urinary peptidomics should be evaluated in the context of drug discovery and research. <b>Areas covered</b>: This review describes urinary peptidomics with focus on its application in drug research in the field of kidney diseases. The authors provide an overview of current achievements and potential future applications. <b>Expert opinion</b>: The urinary peptidome is a dynamically changing source of information, able to reflect sudden and long-term changes affecting the renal system. Studies utilizing urinary peptidomics techniques have demonstrated their value in patient stratification and detection of early pathological changes in kidney disease. Serving as a liquid biopsy, urinary peptides are an invaluable tool for drug response monitoring. Nevertheless, peptidomics is largely underexplored in drug research in general, as evidenced by the scarce number of scientific publications on this topic. Further progress will be driven by the successful validation of current discoveries and continued efforts to improve the translation of results into therapeutic applications.
DOI: 10.6084/m9.figshare.5722351.v1
title: Urinary peptidomics in kidney disease and drug research

description: <b>Introduction</b>: Due to its close connection with the renal system, urine is considered a valuable source of information in kidney disease research. Peptidomics methods focus on the discovery of endogenous peptides, given their wide range of biological functions and diagnostic and therapeutic potential. Representing a non-invasive and sensitive method, technological prospects of urinary peptidomics should be evaluated in the context of drug discovery and research. <b>Areas covered</b>: This review describes urinary peptidomics with focus on its application in drug research in the field of kidney diseases. The authors provide an overview of current achievements and potential future applications. <b>Expert opinion</b>: The urinary peptidome is a dynamically changing source of information, able to reflect sudden and long-term changes affecting the renal system. Studies utilizing urinary peptidomics techniques have demonstrated their value in patient stratification and detection of early pathological changes in kidney disease. Serving as a liquid biopsy, urinary peptides are an invaluable tool for drug response monitoring. Nevertheless, peptidomics is largely underexplored in drug research in general, as evidenced by the scarce number of scientific publications on this topic. Further progress will be driven by the successful validation of current discoveries and continued efforts to improve the translation of results into therapeutic applications.
DOI: 10.6084/m9.figshare.5722327
title: Experimental comparison of functional and multivariate spectral-based supervised classification methods in hyperspectral image

description: The aim of this article is to assess and compare several statistical methods for hyperspectral image supervised classification only using the spectral dimension. Since hyperspectral profiles may be viewed either as a random vector or a random curve, we propose to confront various multivariate discriminating procedures with functional alternatives. Eight methods representing three important statistical communities (mixture models, machine learning and functional data analysis) have been applied on three hyperspectral datasets following three protocols studying the influence of size and composition of the learning sample, with or without noised labels. Besides this comparative study, this work proposes a functional extension of multinomial logit model as well as a fast computing adaptation of the nonparametric functional discrimination. As a by-product, this work provides a useful comprehensive bibliography and also supplemental material especially oriented towards practitioners.
DOI: 10.6084/m9.figshare.5722327.v1
title: Experimental comparison of functional and multivariate spectral-based supervised classification methods in hyperspectral image

description: The aim of this article is to assess and compare several statistical methods for hyperspectral image supervised classification only using the spectral dimension. Since hyperspectral profiles may be viewed either as a random vector or a random curve, we propose to confront various multivariate discriminating procedures with functional alternatives. Eight methods representing three important statistical communities (mixture models, machine learning and functional data analysis) have been applied on three hyperspectral datasets following three protocols studying the influence of size and composition of the learning sample, with or without noised labels. Besides this comparative study, this work proposes a functional extension of multinomial logit model as well as a fast computing adaptation of the nonparametric functional discrimination. As a by-product, this work provides a useful comprehensive bibliography and also supplemental material especially oriented towards practitioners.
DOI: 10.6084/m9.figshare.5722237
title: MOESM1 of Impaired ventricular filling limits cardiac reserve during submaximal exercise in people with type 2 diabetes

description: Additional file 1. Means, standard deviation and statistical comparisons.
DOI: 10.6084/m9.figshare.5722237.v1
title: MOESM1 of Impaired ventricular filling limits cardiac reserve during submaximal exercise in people with type 2 diabetes

description: Additional file 1. Means, standard deviation and statistical comparisons.
DOI: 10.6084/m9.figshare.5722225
title: Additional file 2: of Transcriptome analysis of ruminal epithelia revealed potential regulatory mechanisms involved in host adaptation to gradual high fermentable dietary transition in beef cattle

description: Differentially expressed genes in Down group (89% vs. 72% grain) (worksheet 1); Differentially expressed genes in Up group (89% vs. 72% grain) (worksheet 2); Networks enriched using DE genes in Down group (89% vs. 72% grain) (worksheet 3); Networks enriched using DE genes in Up group (89% vs. 72% grain) (worksheet 4); The detected SNPs (worksheet 5). (XLSX 67Â kb)
DOI: 10.6084/m9.figshare.5722225.v1
title: Additional file 2: of Transcriptome analysis of ruminal epithelia revealed potential regulatory mechanisms involved in host adaptation to gradual high fermentable dietary transition in beef cattle

description: Differentially expressed genes in Down group (89% vs. 72% grain) (worksheet 1); Differentially expressed genes in Up group (89% vs. 72% grain) (worksheet 2); Networks enriched using DE genes in Down group (89% vs. 72% grain) (worksheet 3); Networks enriched using DE genes in Up group (89% vs. 72% grain) (worksheet 4); The detected SNPs (worksheet 5). (XLSX 67Â kb)
DOI: 10.6084/m9.figshare.5722216
title: Additional file 1: Table S1. of Latent class models for Echinococcus multilocularis diagnosis in foxes in Switzerland in the absence of a gold standard

description: Original data file. (XLS 74Â kb)
DOI: 10.6084/m9.figshare.5722216.v1
title: Additional file 1: Table S1. of Latent class models for Echinococcus multilocularis diagnosis in foxes in Switzerland in the absence of a gold standard

description: Original data file. (XLS 74Â kb)
DOI: 10.6084/m9.figshare.5722210
title: Additional file 1: of Transcriptome analysis of ruminal epithelia revealed potential regulatory mechanisms involved in host adaptation to gradual high fermentable dietary transition in beef cattle

description: Differentially expressed genes with higher expression in cattle fed low grain diets (72% vs. 0% and 89% vs. 0%); Functional annotation of HGD and LGD enriched genes using DAVID (72% vs. 0% and 89% vs. 0%) (worksheet 2); Functional annotation of HGD and LGD enriched genes using IPA (72% vs. 0% and 89% vs. 0%) (worksheet 3). (XLSX 465Â kb)
DOI: 10.6084/m9.figshare.5722210.v1
title: Additional file 1: of Transcriptome analysis of ruminal epithelia revealed potential regulatory mechanisms involved in host adaptation to gradual high fermentable dietary transition in beef cattle

description: Differentially expressed genes with higher expression in cattle fed low grain diets (72% vs. 0% and 89% vs. 0%); Functional annotation of HGD and LGD enriched genes using DAVID (72% vs. 0% and 89% vs. 0%) (worksheet 2); Functional annotation of HGD and LGD enriched genes using IPA (72% vs. 0% and 89% vs. 0%) (worksheet 3). (XLSX 465Â kb)
DOI: 10.6084/m9.figshare.5722129
title: MOESM5 of Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0

description: Additional file 5: Table S3. List of the 19 SMARTS rules that were used in this study.
DOI: 10.6084/m9.figshare.5722129.v1
title: MOESM5 of Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0

description: Additional file 5: Table S3. List of the 19 SMARTS rules that were used in this study.
DOI: 10.6084/m9.figshare.5722111
title: MOESM4 of Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0

description: Additional file 4: Table S2. List of 40 compounds from section â Metabolome completion and metabolomicsâ having an identifier in MetaNetX and produced by three identical reactions (i.e. reactions having the same substrates and products) generated using the Sympheny, BNICE and D6 rule sets.
DOI: 10.6084/m9.figshare.5722111.v1
title: MOESM4 of Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0

description: Additional file 4: Table S2. List of 40 compounds from section â Metabolome completion and metabolomicsâ having an identifier in MetaNetX and produced by three identical reactions (i.e. reactions having the same substrates and products) generated using the Sympheny, BNICE and D6 rule sets.
DOI: 10.6084/m9.figshare.5722108
title: Additional file 4: of The impact ofÂ social activities, social networks, social support and social relationships on the cognitive functioning of healthy older adults: a systematic review

description: STROBE quality assessment. Table including information of the quality assessment conducted on all observational studies. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.5722108.v1
title: Additional file 4: of The impact ofÂ social activities, social networks, social support and social relationships on the cognitive functioning of healthy older adults: a systematic review

description: STROBE quality assessment. Table including information of the quality assessment conducted on all observational studies. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.5722096
title: MOESM3 of Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0

description: Additional file 3: Table S1. Solution space reduction arguments or rules corresponding to bond configurations in section â Isomer transformationâ . This is shown for the 36 rules after reduction of the solution space by problem symmetry arguments.
DOI: 10.6084/m9.figshare.5722096.v1
title: MOESM3 of Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0

description: Additional file 3: Table S1. Solution space reduction arguments or rules corresponding to bond configurations in section â Isomer transformationâ . This is shown for the 36 rules after reduction of the solution space by problem symmetry arguments.
DOI: 10.6084/m9.figshare.5722072
title: Additional file 2: Table S1. of Divergent regulation of Arabidopsis SAUR genes: a focus on the SAUR10-clade

description: Overview of published data showing the response of the individual Arabidopsis SAURs to auxin and BR. Table S2. Classes of SAUR genes based on Additional file 2: Table S1. Table S3. Primer sequences. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.5722072.v1
title: Additional file 2: Table S1. of Divergent regulation of Arabidopsis SAUR genes: a focus on the SAUR10-clade

description: Overview of published data showing the response of the individual Arabidopsis SAURs to auxin and BR. Table S2. Classes of SAUR genes based on Additional file 2: Table S1. Table S3. Primer sequences. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.5722063
title: Additional file 1: of KBG syndrome

description: Reported intragenic variants in the ANKRD11 gene. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.5722063.v1
title: Additional file 1: of KBG syndrome

description: Reported intragenic variants in the ANKRD11 gene. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.5722060
title: MOESM1 of Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0

description: Additional file 1. Monomers maps obtained running Retropath2.0 in section â Virtual screening in the chemical spaceâ . The 17 compounds of the 158 available monomers that can be naturally synthesized and the corresponding synthesis pathways.
DOI: 10.6084/m9.figshare.5722060.v1
title: MOESM1 of Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0

description: Additional file 1. Monomers maps obtained running Retropath2.0 in section â Virtual screening in the chemical spaceâ . The 17 compounds of the 158 available monomers that can be naturally synthesized and the corresponding synthesis pathways.
DOI: 10.6084/m9.figshare.5721943
title: Additional file 4: of Comparative transcriptome analysis of Glyphodes pyloalis Walker (Lepidoptera: Pyralidae) reveals novel insights into heat stress tolerance in insects

description: List of the significantly up- and down-regulated genes. (XLSX 570Â kb)
DOI: 10.6084/m9.figshare.5721943.v1
title: Additional file 4: of Comparative transcriptome analysis of Glyphodes pyloalis Walker (Lepidoptera: Pyralidae) reveals novel insights into heat stress tolerance in insects

description: List of the significantly up- and down-regulated genes. (XLSX 570Â kb)
DOI: 10.6084/m9.figshare.5721892
title: Additional file 3: of Preliminary testing of the reliability and feasibility of SAGE: a system to measure and score engagement with and use of research in health policies and programs

description: SAGE scoring checklist. (XLSX 42Â kb)
DOI: 10.6084/m9.figshare.5721892.v1
title: Additional file 3: of Preliminary testing of the reliability and feasibility of SAGE: a system to measure and score engagement with and use of research in health policies and programs

description: SAGE scoring checklist. (XLSX 42Â kb)
DOI: 10.6084/m9.figshare.5721808
title: Additional file 2: of TSPmap, a tool making use of traveling salesperson problem solvers in the efficient and accurate construction of high-density genetic linkage maps

description: Example parameters for generating linkage maps with MSTmap. (TXT 593Â kb)
DOI: 10.6084/m9.figshare.5721808.v1
title: Additional file 2: of TSPmap, a tool making use of traveling salesperson problem solvers in the efficient and accurate construction of high-density genetic linkage maps

description: Example parameters for generating linkage maps with MSTmap. (TXT 593Â kb)
DOI: 10.6084/m9.figshare.5721805
title: Additional file 19: of From ground pools to treeholes: convergent evolution of habitat and phenotype in Aedes mosquitoes

description: supplemental_data.xlsx. Habitat Specializations and Morphological Dimensions of the Aedini. This spreadsheet contains the habitat specializations used in this analysis and the first five morphological dimensions analyzed in the manuscript. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.5721805.v1
title: Additional file 19: of From ground pools to treeholes: convergent evolution of habitat and phenotype in Aedes mosquitoes

description: supplemental_data.xlsx. Habitat Specializations and Morphological Dimensions of the Aedini. This spreadsheet contains the habitat specializations used in this analysis and the first five morphological dimensions analyzed in the manuscript. (XLSX 27 kb)