cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13834858
title: Bacillus subtilis prophages_clustered to vOTUs

description: This dataset comprises genomic sequences of predicted prophage elements from Bacillus subtilis genomes, organized into separate FASTA files based on clustering results. A total of 64 FASTA files are provided. Within each file, individual prophage sequences are listed, each preceded by a header in the following format: >AP011541.2_Phage_7_Pos_3240205-3266407. This format denotes the host genome ID, phage identifier, and the prophage coordinates within the host genome. Each FASTA file is uniquely numbered to correspond with a viral Operational Taxonomic Unit (vOTU), representing the prophage group to which the sequences belong.

The prophage elements were sourced from both complete B. subtilis genome sequences available in NCBI's database (191 genomes; last accessed March 2023) and from 40 local soil microscale isolates (PS strains; PRJNA437002). Prophage coordinates within the bacterial genomes were identified using the PHASTER web tool. Functional categories assigned by PHASTER (complete, questionable, incomplete) were disregarded, and all predicted prophage elements were included.

These prophage elements were then clustered using the vContact2 tool. Briefly, prophage genes were predicted using Prodigal, translated into proteins, and subjected to reference-free phylogenetic clustering via vContact2. This tool constructs a network based on the number of shared proteins between phages. The ClusterOne algorithm was then applied to this network to infer groups of related phages, which were used to define vOTUs for further analysis.

In addition to the vOTU-based clusters, two artificial clusters were created: Outliers and Singletons. Outliers share some proteins with different vOTUs but fall below the 20% similarity threshold, while Singletons represent prophage elements with no similarity to other clusters.

Dataset is described in publication: doi: https://doi.org/10.1101/2024.07.03.601884
DOI: 10.5281/zenodo.13834859
title: Bacillus subtilis prophages_clustered to vOTUs

description: This dataset comprises genomic sequences of predicted prophage elements from Bacillus subtilis genomes, organized into separate FASTA files based on clustering results. A total of 64 FASTA files are provided. Within each file, individual prophage sequences are listed, each preceded by a header in the following format: >AP011541.2_Phage_7_Pos_3240205-3266407. This format denotes the host genome ID, phage identifier, and the prophage coordinates within the host genome. Each FASTA file is uniquely numbered to correspond with a viral Operational Taxonomic Unit (vOTU), representing the prophage group to which the sequences belong.

The prophage elements were sourced from both complete B. subtilis genome sequences available in NCBI's database (191 genomes; last accessed March 2023) and from 40 local soil microscale isolates (PS strains; PRJNA437002). Prophage coordinates within the bacterial genomes were identified using the PHASTER web tool. Functional categories assigned by PHASTER (complete, questionable, incomplete) were disregarded, and all predicted prophage elements were included.

These prophage elements were then clustered using the vContact2 tool. Briefly, prophage genes were predicted using Prodigal, translated into proteins, and subjected to reference-free phylogenetic clustering via vContact2. This tool constructs a network based on the number of shared proteins between phages. The ClusterOne algorithm was then applied to this network to infer groups of related phages, which were used to define vOTUs for further analysis.

In addition to the vOTU-based clusters, two artificial clusters were created: Outliers and Singletons. Outliers share some proteins with different vOTUs but fall below the 20% similarity threshold, while Singletons represent prophage elements with no similarity to other clusters.

Dataset is described in publication: doi: https://doi.org/10.1101/2024.07.03.601884
DOI: 10.15468/dl.mamzr8
title: Occurrence Download

description: A dataset containing 1747 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ribes columbianum Cuatrec., Ribes hirtum Humb. & Bonpl. ex Roem. & Schult., Ribes ecuadorense Jancz., Ribes macrostachyum Jancz., Ribes bolivianum Jancz., Ribes andicola Jancz., Ribes viscosum Ruiz & Pav., Ribes incarnatum Wedd., Ribes macrobotrys Ruiz & Pav., Ribes brachybotrys (Wedd.) Jancz., Ribes pentlandii Britton, Ribes cuneifolium Ruiz & Pav., Ribes hirticaule J.F.Macbr., Ribes ovalifolium Jancz., Ribes magellanicum Poir., Ribes trilobum Meyen, Ribes punctatum Ruiz & Pav., Ribes cucullatum Hook. & Arn.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 }
 ]
}

 The dataset includes 1747 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028665-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13751006
title: Mediocres en la academia: el área de conocimiento de Biblioteconomía y Documentación del departamento de Historia de la Ciencia y Documentación (HCyD) de la Universitat de València como caso de estudio. Anexo IV. Publicaciones en las que se ha basado el análisis bibliométrico de la actividad investigadora del área de conocimiento de Biblioteconomía y Documentación del departamento de HCyD.

description: Annex IV. Publications on which the bibliometric analysis of the research activity of the area of knowledge of Library and Information Science and Documentation of the History of Science and Documentastion department has been based.
DOI: 10.15468/dl.g3b94y
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "CollectionKey" : [
 "is 28bb584c-7e90-4cb5-819d-1a413c7cf6e2"
 ]
}

 The dataset includes 47 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028666-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13751002
title: Mediocres en la academia: el área de conocimiento de Biblioteconomía y Documentación del departamento de Historia de la Ciencia y Documentación (HCyD) de la Universitat de València como caso de estudio. Anexo III. Bibliografía formativa relacionada con el proceso de preparación, envío y evaluación de los manuscritos por parte de las revistas científicas.

description: Annex III. Bibliography related to the process of preparation, submission and evaluation of manuscripts by scientific journals.
DOI: 10.5281/zenodo.13750981
title: Mediocres en la academia: el área de conocimiento de Biblioteconomía y Documentación del departamento de Historia de la Ciencia y Documentación (HCyD) de la Universitat de València como caso de estudio. Anexo I. Tesis doctorales realizadas y dirigidas o codirigidas a lo largo del período 1999-2021 por los miembros del área de conocimiento de Bibliotenomía y Documentación del departamento de HCyD identificadas a través de la base de datos Teseo.

description: Annex I. Doctoral theses completed and supervised or co-directed during the period 1999-2021 by members of the Department of Library and Information Science and Documentation identified through the Teseo database.
DOI: 10.15468/dl.8zj7qf
title: Occurrence Download

description: A dataset containing 44637 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((11.75784 78.85572,12.33616 78.85572,12.33616 79.05095,11.75784 79.05095,11.75784 78.85572))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 44637 records from 140 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028667-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.myuh95
title: Occurrence Download

description: A dataset containing 616198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Psittacidae"
 ]
}

 The dataset includes 616198 records from 444 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028659-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p1spimmw
title: Tiltmeter data from Kīlauea stations (ESC, IKI, JKA, KAE, POC, SDH, SMC, UWE) from January 1 to December 31, 2022

description: Tiltmeter data from Kīlauea stations (ESC, IKI, JKA, KAE, POC, SDH, SMC, UWE) from January 1 to December 31, 2022. These data were collected in 2022 by Andria P. Ellis of the USGS Hawaiian Volcano Observatory.
DOI: 10.15468/dl.kyarvb
title: Occurrence Download

description: A dataset containing 214 species occurrences available in GBIF matching the query:
{
 "CollectionKey" : [
 "is 19515b90-e326-468a-9efa-2ffb1a066a92"
 ]
}

 The dataset includes 214 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028671-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6r65xr
title: Occurrence Download

description: A dataset containing 7075 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myotis californicus (Audubon & Bachman, 1842)"
 ]
}

 The dataset includes 7075 records from 126 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028670-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k5v5ry
title: Occurrence Download

description: A dataset containing 6807 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myotis alcathoe von Helversen & Heller, 2001"
 ]
}

 The dataset includes 6807 records from 547 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028669-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.akxuvw
title: Occurrence Download

description: A dataset containing 417 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myotis ater (Peters, 1866)"
 ]
}

 The dataset includes 417 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028673-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6e2pzw
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Encyclia candollei (Lindl.) Schltr."
 ]
}

 The dataset includes 158 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028672-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2cyr7e
title: Occurrence Download

description: A dataset containing 1613 species occurrences available in GBIF matching the query:
{
 "CollectionKey" : [
 "is 2b3d23a6-3a0e-4477-a20c-38d1a4bae0a1"
 ]
}

 The dataset includes 1613 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028674-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ckt5k5
title: Occurrence Download

description: A dataset containing 2474 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myotis muricola (Gray, 1846)"
 ]
}

 The dataset includes 2474 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028675-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dpva6m
title: Occurrence Download

description: A dataset containing 1994 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-71.54700 18.23266,-68.44729 18.23266,-68.44729 19.47125,-71.54700 19.47125,-71.54700 18.23266))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Asteraceae"
 ]
}

 The dataset includes 1994 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028676-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4a8cv4
title: Occurrence Download

description: A dataset containing 885087 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Cyanobacteria"
 ]
}

 The dataset includes 885087 records from 1698 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028668-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29245718
title: <b>付表</b><b> </b><b>繊毛虫類に用いられる形態用語．</b>石田正樹・島野智之（2025）繊毛虫類の形態用語と高次分類体系. 原生生物 8.

description: <b>付表</b> 繊毛虫類に用いられる形態用語．石田正樹・島野智之（2025）繊毛虫類の形態用語と高次分類体系. 原生生物 8.
DOI: 10.6084/m9.figshare.29245718.v1
title: <b>付表</b><b> </b><b>繊毛虫類に用いられる形態用語．</b>石田正樹・島野智之（2025）繊毛虫類の形態用語と高次分類体系. 原生生物 8.

description: <b>付表</b> 繊毛虫類に用いられる形態用語．石田正樹・島野智之（2025）繊毛虫類の形態用語と高次分類体系. 原生生物 8.
DOI: 10.15468/dl.pqeru9
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "TaxonKey is Senna hirsuta (L.) H.S.Irwin & Barneby"
 ]
}

 The dataset includes 78 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130176-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8chqxg
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Valsaria rubricosa (Fr.) Sacc.",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is United States of America",
 "Country is United States",
 "Country is United States of America",
 "Country is Canada",
 "Continent is North America"
 ]
 }
 ]
}

 The dataset includes 21 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134813-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.56snwu
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Todiramphus youngi Sharpe, 1892"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0402534-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-30213
title: Correspondence book No. 4 of Pentecostal Missionary Union [PMU], 1921-1923

description: [description english/roman)] Pentecostal Missionary Union [PMU] Correspondence book No. 4 including 2012 pages of PMU outgoing correspondence; 50 pages of subject index.
DOI: 10.15468/dl.8r3rvs
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schulzia dissecta (C.B.Clarke) C.Norman"
 ]
}

 The dataset includes 33 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081891-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-236404
title: Birthday service booklet, Dorothy Adell Robinson-Abrams, 2002

description: [description english/roman)] Birthday service booklet, Dorothy Adell Robinson-Abrams, 2002 June 29.
DOI: 10.15468/dl.66ttzw
title: Occurrence Download

description: A dataset containing 4752 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Arizona elegans Kennicott, 1859"
 ]
}

 The dataset includes 4752 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0185977-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ujz2hp
title: Occurrence Download

description: A dataset containing 128597 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TypeStatus is not null",
 "PublishingCountry is Sweden"
 ]
}

 The dataset includes 128597 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0404836-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7284/157644
title: Singlebeam Echosounder data collected during research cruise EN707 using a Knudsen 320B/R instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.15468/dl.43trek
title: Occurrence Download

description: A dataset containing 3405 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((70 20,115 20,115 45,70 45,70 20))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tilia L."
 ]
}

 The dataset includes 3405 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130181-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-236389
title: Women of Wisdom summit program, Faith Kingdom COGIC, Dallas, 1998

description: [description english/roman)] Women of Wisdom summit program, Faith Kingdom Church of God in Christ, Dallas, Texas, 1998 December 2-6.
DOI: 10.15468/dl.cj2j7g
title: Occurrence Download

description: A dataset containing 1314 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-71.0046523999999977 42.2199939999999998, -71.0046523999999977 42.2225685700000000, -71.0046523999999977 42.2237998900000022, -71.0046523999999977 42.2263744700000032, -71.0046523999999977 42.2282774099999969, -71.0046523999999977 42.2296206700000027, -71.0046523999999977 42.2311878000000007, -71.0020738999999992 42.2311878000000007, -71.0002800299999990 42.2311878000000007, -70.9973650000000021 42.2311878000000007, -70.9945620900000023 42.2311878000000007, -70.9927684000000028 42.2311878000000007, -70.9927684000000028 42.2299564799999985, -70.9927684000000028 42.2279416000000012, -70.9927684000000028 42.2265983400000025, -70.9927684000000028 42.2239118299999987, -70.9927684000000028 42.2224566399999972, -70.9927684000000028 42.2199939999999998, -70.9961317199999939 42.2199939999999998, -70.9983740499999953 42.2199939999999998, -71.0014012000000037 42.2199939999999998, -71.0046523999999977 42.2199939999999998))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 1314 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0100940-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fuy3xs
title: Occurrence Download

description: A dataset containing 3357 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crepidiastrum denticulatum (Houtt.) Pak & Kawano",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3357 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064932-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x9hfgr
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aulacospermum gonocaulum Popov"
 ]
}

 The dataset includes 24 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081894-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-236577
title: Annual Holy convocation of the Church of God in Christ (89th: 1996), women's day program

description: [description english/roman)] Women's day program, "Continually defining the role of the church now!... and into the 21st century", 89th Annual Holy Convocation of the Church of God in Christ, Memphis, Tennessee, 1996 November 8.
DOI: 10.15468/dl.tucvbe
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alouatta nigerrima Lönnberg, 1941"
 ]
}

 The dataset includes 29 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0351219-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q9yjad
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lissocampus fatiloquus (Whitley, 1943)"
 ]
}

 The dataset includes 28 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064889-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-30377
title: Correspondence book No. 4 of Pentecostal Missionary Union [PMU], 1921-1923

description: [description english/roman)] Pentecostal Missionary Union [PMU] Correspondence book No. 4 including 2012 pages of PMU outgoing correspondence; 50 pages of subject index.