cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6346263
title: Amyloid-beta 16-22 peptide monomer simulation (without salt) with the CHARMM-Drude force field and OpenMM (Run 2)

description: Amyloid-beta 16-22 peptide (monomer) simulations with the CHARMM-Drude force field and OpenMM. Initial structures are obtained from CHARMM-GUI. This is the second independent simulation run out of three. The system does not contain any ions. Total trajectory length is 1 microseconds. Frame saving frequency is 10 ps. All the simulation parameters and force field files are uploaded into this repository. Simulations are done with OpenMM v. 7.5.1.
DOI: 10.5281/zenodo.6346262
title: Amyloid-beta 16-22 peptide monomer simulation (without salt) with the CHARMM-Drude force field and OpenMM (Run 2)

description: Amyloid-beta 16-22 peptide (monomer) simulations with the CHARMM-Drude force field and OpenMM. Initial structures are obtained from CHARMM-GUI. This is the second independent simulation run out of three. The system does not contain any ions. Total trajectory length is 1 microseconds. Frame saving frequency is 10 ps. All the simulation parameters and force field files are uploaded into this repository. Simulations are done with OpenMM v. 7.5.1.
DOI: 10.5281/zenodo.6336693
title: Amyloid-beta 16-22 peptide monomer simulation (without salt) with the CHARMM-Drude force field and OpenMM (Run 1)

description: Amyloid-beta 16-22 peptide (monomer) simulations with the CHARMM-Drude force field and OpenMM. Initial structures are obtained from CHARMM-GUI. This is the first independent simulation runs out of three. The system does not contain any ions. Total trajectory length is 1 microseconds. Frame saving frequency is 10 ps. All the simulation parameters and force field files are uploaded into this repository. Simulations are done with OpenMM v. 7.5.1.
DOI: 10.5281/zenodo.6336692
title: Amyloid-beta 16-22 peptide monomer simulation (without salt) with the CHARMM-Drude force field and OpenMM (Run 1)

description: Amyloid-beta 16-22 peptide (monomer) simulations with the CHARMM-Drude force field and OpenMM. Initial structures are obtained from CHARMM-GUI. This is the first independent simulation runs out of three. The system does not contain any ions. Total trajectory length is 1 microseconds. Frame saving frequency is 10 ps. All the simulation parameters and force field files are uploaded into this repository. Simulations are done with OpenMM v. 7.5.1.
DOI: 10.5517/ccdc.csd.cc28m5kn
title: CCDC 2103801: Experimental Crystal Structure Determination

description: Related Article: Md Ashif Ali, Kandala Laxman, Kamakshya Nath Panda, Mangalampalli Ravikanth|2022|J.Org.Chem.|87|2480|doi:10.1021/acs.joc.1c02384
DOI: 10.5517/ccdc.csd.cc28qhr8
title: CCDC 2107000: Experimental Crystal Structure Determination

description: Related Article: Tong-Xin Liu, Han Wu, Nana Ma, Chuanjie Zhang, Pengling Zhang, Jinliang Ma, Guisheng Zhang|2022|J.Org.Chem.|87|3104|doi:10.1021/acs.joc.1c02875
DOI: 10.5517/ccdc.csd.cc28qhs9
title: CCDC 2107001: Experimental Crystal Structure Determination

description: Related Article: Tong-Xin Liu, Han Wu, Nana Ma, Chuanjie Zhang, Pengling Zhang, Jinliang Ma, Guisheng Zhang|2022|J.Org.Chem.|87|3104|doi:10.1021/acs.joc.1c02875
DOI: 10.5517/ccdc.csd.cc28wgn9
title: CCDC 2111771: Experimental Crystal Structure Determination

description: Related Article: Martin Doll, Patrick Berthault, Estelle Léonce, Céline Boutin, Erwann Jeanneau, Thierry Brotin, Nicolas De Rycke|2022|J.Org.Chem.|87|2912|doi:10.1021/acs.joc.1c02774
DOI: 10.5517/ccdc.csd.cc295hff
title: CCDC 2120444: Experimental Crystal Structure Determination

description: Related Article: Jon Napal, Beñat Artetxe, Garikoitz Beobide, Oscar Castillo, Antonio Luque, Jon Pascual-Colino, Sonia Pérez-Yáñez, Maite Perfecto-Irigaray|2022|Inorg.Chem.Front.|9|935|doi:10.1039/D1QI01411K
DOI: 10.5517/ccdc.csd.cc299t3k
title: CCDC 2124588: Experimental Crystal Structure Determination

description: Related Article: Subham Ranjan, Satoshi Takamizawa|2022|Cryst.Growth Des.|22|1831|doi:10.1021/acs.cgd.1c01394
DOI: 10.5517/ccdc.csd.cc299t4l
title: CCDC 2124589: Experimental Crystal Structure Determination

description: Related Article: Subham Ranjan, Satoshi Takamizawa|2022|Cryst.Growth Des.|22|1831|doi:10.1021/acs.cgd.1c01394
DOI: 10.5517/ccdc.csd.cc299t5m
title: CCDC 2124590: Experimental Crystal Structure Determination

description: Related Article: Subham Ranjan, Satoshi Takamizawa|2022|Cryst.Growth Des.|22|1831|doi:10.1021/acs.cgd.1c01394
DOI: 10.5517/ccdc.csd.cc29cj8h
title: CCDC 2126236: Experimental Crystal Structure Determination

description: Related Article: Qiuyuan Wang, Mengnan Lai, Huajun Luo, Keke Ren, Jingrui Wang, Nianyu Huang, Zhangshuang Deng, Kun Zou, Hui Yao|2022|Org.Lett.|24|1587|doi:10.1021/acs.orglett.1c04378
DOI: 10.5517/ccdc.csd.cc296ksw
title: CCDC 2121478: Experimental Crystal Structure Determination

description: Related Article: Yue-Xiao Wu, Ming-Hui Huang, Kang Peng, Zhen Shi, Er-jun Hao, Zhi-Bing Dong|2022|J.Org.Chem.|87|2446|doi:10.1021/acs.joc.1c02353
DOI: 10.6084/m9.figshare.19353518
title: rs1021188-TN.xlsx

description: Genetic association of rs1021188 and DNA methylation signatures of TNFSF11 in the risk of Conductive Hearing Loss
DOI: 10.6084/m9.figshare.19350284
title: Learning optimal solution characteristics of the Correlation Clustering problem

description: This dataset is used for studying the space of optimal solutions of the Correlation Clustering problem. It contains both complete and incomplete signed networks, as well as their spaces of optimal solutions. <br><br>
DOI: 10.6084/m9.figshare.19350284.v2
title: Learning optimal solution characteristics of the Correlation Clustering problem

description: This dataset is used for studying the space of optimal solutions of the Correlation Clustering problem. It contains both complete and incomplete signed networks, as well as their spaces of optimal solutions. <br><br>
DOI: 10.6084/m9.figshare.19350284.v1
title: Learning optimal solution characteristics of the Correlation Clustering problem

description: This dataset is used for studying the space of optimal solutions of the Correlation Clustering problem. It contains both complete and incomplete signed networks, as well as their spaces of optimal solutions. <br><br>
DOI: 10.12751/g-node.kxr89n
title: Mattis-et-al-2022 Corticohippocampal circuit dysfunction in a mouse model of Dravet syndrome

description: Accompanying source data to preprint: Joanna Mattis, Ala Somarowthu, Kevin M. Goff, Evan Jiang, Jina Yom, Nathaniel Sotuyo, Laura M. Mcgarry, Huijie Feng, Keisuke Kaneko, Ethan M. Goldberg. Corticohippocampal circuit dysfunction in a mouse model of Dravet syndrome. eLife 2022;11:e69293 DOI: 10.7554/eLife.69293
description: IsSupplementTo: Mattis J, Somarowthu A, Goff KM, Yom J, Sotuyo NP, Mcgarry LM, Feng H, Kaneko K, Goldberg EM. Corticohippocampal circuit dysfunction in a mouse model of Dravet syndrome. eLife 2022;11:e69293 DOI: 10.7554/eLife.69293. (https://doi.org/10.7554/eLife.69293)
DOI: 10.5519/qd.lrp26ljl
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (307 records)
DOI: 10.17909/h5am-6714
title: Data used in "Disk Evolution Study Through Imaging of Nearby Young Stars (DESTINYS): A Panchromatic View of DO Tau's Complex Kilo-au Environment"

description: Data used in "Disk Evolution Study Through Imaging of Nearby Young Stars
(DESTINYS): A Panchromatic View of DO Tau's Complex Kilo-au Environment"
DOI: 10.34740/kaggle/dsv/3278315
title: LTE downlink MCS 8, 9, 10, 11, 12, 13, 14, 15, 16
DOI: 10.5281/zenodo.6351328
title: Market prices in Tigray (March 2020 – March 2022)

description: In northern Ethiopia, Tigray continues to be blockaded. The 2021 crop yield was just 25-50 percent of what it would be in a regular year. At the beginning of March 2022, colleagues and friends in Tigray provided us with average statistics on the cost of living in Tigray (especially food). Farmlands had been poorly ploughed and planted lately or not at all due to military targeting of farming activities. Hence, every crop has gotten more costly. As a result of distress or desperation sales, the price of live animals has dropped dramatically. Coffee, firewood, gasoline, and transportation have also seen significant price rises. Extreme shortages of food and energy supplies drive up inflation, but the fact that there are very limited amounts of cash in circulation curbs it.
DOI: 10.5281/zenodo.6344844
title: Market prices in Tigray (March 2020 – March 2022)

description: In northern Ethiopia, Tigray continues to be blockaded. The 2021 crop yield was just 25-50 percent of what it would be in a regular year. At the beginning of March 2022, colleagues and friends in Tigray provided us with average statistics on the cost of living in Tigray (especially food). Farmlands had been poorly ploughed and planted lately or not at all due to military targeting of farming activities. Hence, every crop has gotten more costly. As a result of distress or desperation sales, the price of live animals has dropped dramatically. Coffee, firewood, gasoline, and transportation have also seen significant price rises. Extreme shortages of food and energy supplies drive up inflation, but the fact that there are very limited amounts of cash in circulation curbs it.
DOI: 10.6084/m9.figshare.19344899
title: LmTraceMap: A Listeria monocytogenes fast-tracing platform for global surveillance

description: Programs and data of LmTraceMap<br>
DOI: 10.6084/m9.figshare.19344899.v1
title: LmTraceMap: A Listeria monocytogenes fast-tracing platform for global surveillance

description: Programs and data of LmTraceMap<br>
DOI: 10.17632/gpfw4y46c8.1
title: Defining coarse-grainability in a model of structured microbial ecosystems

description: MATLAB simulation code and scripts reproducing all figures in Moran & Tikhonov (2022), "Defining coarse-grainability in a model of structured microbial ecosystems" . Optional pre-computed simulation data included to speed-up figure plotting -- remove or rename any data file to rerun the corresponding simulations from scratch.
DOI: 10.6084/m9.figshare.17871734
title: Multiple sequence alignment files and Perl scripts for P. minor genome

description: Multiple sequence alignment file of five gene family phylogenetic analysis to show the gene sequences used in tree building and two in-house Perl scripts for gene structure features and gap position removal.
DOI: 10.48370/ofd/pto3ss/1sddf6
title: 483_1.S3Dm

description: :unav
DOI: 10.48370/ofd/pto3ss/iwiwce
title: 483_2.S3Dm

description: :unav
DOI: 10.48370/ofd/pto3ss
title: Resinicium bicolor (Alb. Schwein.) Parmasto, 483

description: Fungarium Makromycetes
DOI: 10.48370/ofd/laljok/cwzrse
title: 403_1.S3Dm

description: :unav
DOI: 10.48370/ofd/laljok/xnqk0m
title: 403_2.S3Dm

description: :unav
DOI: 10.48370/ofd/laljok
title: Resinicium bicolor (Alb. Schwein.) Parmasto, 403

description: Fungarium Makromycetes
DOI: 10.5281/zenodo.6343323
title: Questionnaire for surveys on Urban Green Space use and survey raw data for Brussels (Belgium), Luxembourg-city (Luxembourg) and Rouen (France)

description: The repository contains the xml files of survey questionnaires on the use of urban green spaces. All survey files are translated into three languages (English, French and German). At the time of this publication, these questionnaires have already been used for conducting face-to-face surveys in 2016 in Brussels (Belgium), in 2017 in Luxembourg-city (Luxembourg) and in 2017 in Rouen (France). The results of these surveys are provided in raw data format (csv files), after anonymisation (home and workplace locations have been removed). Please feel free to contact us for any supplementary info.
DOI: 10.5281/zenodo.6343322
title: Questionnaire for surveys on Urban Green Space use and survey raw data for Brussels (Belgium), Luxembourg-city (Luxembourg) and Rouen (France)

description: The repository contains the xml files of survey questionnaires on the use of urban green spaces. All survey files are translated into three languages (English, French and German). At the time of this publication, these questionnaires have already been used for conducting face-to-face surveys in 2016 in Brussels (Belgium), in 2017 in Luxembourg-city (Luxembourg) and in 2017 in Rouen (France). The results of these surveys are provided in raw data format (csv files), after anonymisation (home and workplace locations have been removed). Please feel free to contact us for any supplementary info.
DOI: 10.34740/kaggle/dsv/3297401
title: AutoXGB
DOI: 10.5281/zenodo.6351338
title: Dataset of The Relationship Between Postoperative Opioid Analgesia and Sleep Apnea Severity in Patients Undergoing Hip Arthroplasty: A Randomized, Controlled, Triple-Blinded Trial

description: This the dataset related to the article entitled "he Relationship Between Postoperative Opioid Analgesia and Sleep Apnea Severity in Patients Undergoing Hip Arthroplasty: A Randomized, Controlled, Triple-Blinded Trial". Purpose: Residual postoperative pain after hip arthroplasty is usually treated with oral opioids. While classic opioids are associated with respiratory depression and worsening of sleep apnea, tramadol has been reported to preserve respiratory function. However, this has not been investigated in a prospective trial using respiratory polygraphy. This randomized controlled triple-blinded trial tested the hypothesis that postoperative treatment with oral opioids such as oxycodone would increase sleep apnea severity, measured with a respiratory polygraphy, compared with oral tramadol.<br> Patients and Methods: Sixty patients undergoing hip arthroplasty under spinal anesthesia with 15 mg isobaric bupivacaine 0.5% were randomized to receive postoperative pain treatment with either oral oxycodone (controlled-release 10 mg every 12 hours and immediate-release 5 mg every 4 hours as needed) or oral tramadol (controlled-release 100 mg every 8 hours and immediate-release 50 mg every 4 hours as needed). Respiratory polygraphy was performed on the first postoperative night. The primary outcome was the apnea-hypopnea index in the supine position. Secondary outcomes included the oxygen desaturation index, postoperative pain scores and intravenous morphine consumption.<br> Results: Mean supine apnea-hypopnea index on postoperative night 1 was 11.3 events.h−1 (95% confidence interval, 4.8–17.7) in the oxycodone group and 10.7 (4.6–16.8) events.h−1 in the tramadol group (p=0.89). There were no significant differences between the oxycodone and tramadol groups with respect to any secondary sleep-related or pain-related outcomes.<br> Conclusion: Oral oxycodone did not increase sleep apnea severity measured using respiratory polygraphy compared with oral tramadol on the first postoperative night after hip arthroplasty.
DOI: 10.5281/zenodo.6351337
title: Dataset of The Relationship Between Postoperative Opioid Analgesia and Sleep Apnea Severity in Patients Undergoing Hip Arthroplasty: A Randomized, Controlled, Triple-Blinded Trial

description: This the dataset related to the article entitled "he Relationship Between Postoperative Opioid Analgesia and Sleep Apnea Severity in Patients Undergoing Hip Arthroplasty: A Randomized, Controlled, Triple-Blinded Trial". Purpose: Residual postoperative pain after hip arthroplasty is usually treated with oral opioids. While classic opioids are associated with respiratory depression and worsening of sleep apnea, tramadol has been reported to preserve respiratory function. However, this has not been investigated in a prospective trial using respiratory polygraphy. This randomized controlled triple-blinded trial tested the hypothesis that postoperative treatment with oral opioids such as oxycodone would increase sleep apnea severity, measured with a respiratory polygraphy, compared with oral tramadol.<br> Patients and Methods: Sixty patients undergoing hip arthroplasty under spinal anesthesia with 15 mg isobaric bupivacaine 0.5% were randomized to receive postoperative pain treatment with either oral oxycodone (controlled-release 10 mg every 12 hours and immediate-release 5 mg every 4 hours as needed) or oral tramadol (controlled-release 100 mg every 8 hours and immediate-release 50 mg every 4 hours as needed). Respiratory polygraphy was performed on the first postoperative night. The primary outcome was the apnea-hypopnea index in the supine position. Secondary outcomes included the oxygen desaturation index, postoperative pain scores and intravenous morphine consumption.<br> Results: Mean supine apnea-hypopnea index on postoperative night 1 was 11.3 events.h−1 (95% confidence interval, 4.8–17.7) in the oxycodone group and 10.7 (4.6–16.8) events.h−1 in the tramadol group (p=0.89). There were no significant differences between the oxycodone and tramadol groups with respect to any secondary sleep-related or pain-related outcomes.<br> Conclusion: Oral oxycodone did not increase sleep apnea severity measured using respiratory polygraphy compared with oral tramadol on the first postoperative night after hip arthroplasty.
DOI: 10.5281/zenodo.6351342
title: Raw Data for the article: Potential Anti-Metastatic Role of the Novel miR-CT3 in Tumor Angiogenesis and Osteosarcoma Invasion

description: Osteosarcoma (OS) is the most common primary bone tumor mainly occurring in young adults and derived from primitive bone-forming mesenchyme. OS develops in an intricate tumor microenvironment (TME) where cellular function regulated by microRNAs (miRNAs) may affect communication between OS cells and the surrounding TME. Therefore, miRNAs are considered potential therapeutic targets in cancer and one of the goals of research is to accurately define a specific signature of a miRNAs, which could reflect the phenotype of a particular tumor, such as OS. Through NGS approach, we previously found a specific molecular profile of miRNAs in OS and discovered 8 novel miRNAs. Among these, we deepen our knowledge on the fifth candidate renamed now miR-CT3. MiR-CT3 expression was low in OS cells when compared with human primary osteoblasts and healthy bone. Through TargetScan, VEGF-A was predicted as a potential biological target of miR-CT3 and luciferase assay confirmed it. We showed that enforced expression of miR-CT3 in two OS cell lines, SAOS-2 and MG-63, reduced expression of VEGF-A mRNA and protein, inhibiting tumor angiogenesis. Enforced expression of miR-CT3 also reduced OS cell migration and invasion as confirmed by soft agar colony formation assay. Interestingly, we found that miR-CT3 behaves inducing the activation of p38 MAP kinase pathway and modulating the epithelial-mesenchymal transition (EMT) proteins, in particular reducing Vimentin expression. Overall, our study highlights the novel role of miR-CT3 in regulating tumor angiogenesis and progression in OS cells, linking also to the modulation of EMT proteins.
DOI: 10.5281/zenodo.6351341
title: Raw Data for the article: Potential Anti-Metastatic Role of the Novel miR-CT3 in Tumor Angiogenesis and Osteosarcoma Invasion

description: Osteosarcoma (OS) is the most common primary bone tumor mainly occurring in young adults and derived from primitive bone-forming mesenchyme. OS develops in an intricate tumor microenvironment (TME) where cellular function regulated by microRNAs (miRNAs) may affect communication between OS cells and the surrounding TME. Therefore, miRNAs are considered potential therapeutic targets in cancer and one of the goals of research is to accurately define a specific signature of a miRNAs, which could reflect the phenotype of a particular tumor, such as OS. Through NGS approach, we previously found a specific molecular profile of miRNAs in OS and discovered 8 novel miRNAs. Among these, we deepen our knowledge on the fifth candidate renamed now miR-CT3. MiR-CT3 expression was low in OS cells when compared with human primary osteoblasts and healthy bone. Through TargetScan, VEGF-A was predicted as a potential biological target of miR-CT3 and luciferase assay confirmed it. We showed that enforced expression of miR-CT3 in two OS cell lines, SAOS-2 and MG-63, reduced expression of VEGF-A mRNA and protein, inhibiting tumor angiogenesis. Enforced expression of miR-CT3 also reduced OS cell migration and invasion as confirmed by soft agar colony formation assay. Interestingly, we found that miR-CT3 behaves inducing the activation of p38 MAP kinase pathway and modulating the epithelial-mesenchymal transition (EMT) proteins, in particular reducing Vimentin expression. Overall, our study highlights the novel role of miR-CT3 in regulating tumor angiogenesis and progression in OS cells, linking also to the modulation of EMT proteins.
DOI: 10.15468/dl.sm35xm
title: Occurrence Download

description: A dataset containing 721 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Veronica porphyriana Pavlov"
 ]
}

 The dataset includes 721 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136297-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tjwpyn
title: Occurrence Download

description: A dataset containing 400 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "TaxonKey is Rhinella arenarum (Hensel, 1867)",
 "TaxonKey is Bufo arenarum Hensel, 1867"
 ]
 },
 "Year 2000-2020"
 ]
}

 The dataset includes 400 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136265-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uak92h
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantago cretica L.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136298-240321170329656/datasets/export for details.
DOI: 10.15468/dl.0sczuk
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "HasCoordinate is true",
 "TaxonKey is Osmoderma eremita (Scopoli, 1763)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 33 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013675-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6my33j
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xanthophyllum punctatum Meijden"
 ]
}

 The dataset includes 42 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136299-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6k8bkm
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Colea nana H.Perrier"
 ]
}

 The dataset includes 32 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005583-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.