cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12570869
title: Clust&See3.0 : clustering, module exploration and annotation.

description: Clust&See3.0 is the novel version of a Cytoscape app that has been developed to identify, visualize and manipulate network clusters and modules, newly enriched with functionalities allowing custom annotations of nodes and computation of their statistical enrichments. As the wealth of multi-omics data is growing, such functionalities are highly valuable for a better understanding of biological module composition.

 



go_annot.txt : The protein annotation file extracted from Gene Ontology Biological Process database.

HuRI_CC.txt : The network file containing the largest connect component of  the human reference interactome network [1]


[1] Luck K, Kim D-K, Lambourne L, Spirohn K, Begg BE, Bian W, et al. A reference map of the human binary protein interactome. Nature. 2020;580:402–8.
DOI: 10.5281/zenodo.12570870
title: Clust&See3.0 : clustering, module exploration and annotation.

description: Clust&See3.0 is the novel version of a Cytoscape app that has been developed to identify, visualize and manipulate network clusters and modules, newly enriched with functionalities allowing custom annotations of nodes and computation of their statistical enrichments. As the wealth of multi-omics data is growing, such functionalities are highly valuable for a better understanding of biological module composition.

 



go_annot.txt : The protein annotation file extracted from Gene Ontology Biological Process database.

HuRI_CC.txt : The network file containing the largest connect component of  the human reference interactome network [1]


[1] Luck K, Kim D-K, Lambourne L, Spirohn K, Begg BE, Bian W, et al. A reference map of the human binary protein interactome. Nature. 2020;580:402–8.
DOI: 10.15468/dl.nm7spu
title: Occurrence Download

description: A dataset containing 309 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heliconius besckei (Ménétriés, 1857)"
 ]
}

 The dataset includes 309 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002334-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ezxk8p
title: Occurrence Download

description: A dataset containing 563 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Guarea purusana C.DC., Guarea jatuaranana Harms)"
 ]
}

 The dataset includes 563 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002335-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p13fpyvn
title: Pesticide Concentrations Measured in Zooplankton Samples Collected from the Sacramento River, Yolo Bypass, and Cache Slough Region, California, 2022 and 2023

description: Zooplankton samples were collected in the summer/fall of 2022 and 2023 at multiple sites in the Sacramento River, Yolo Bypass, and Cache Slough Region of California and analyzed for a suite of 160 current-use pesticides and pesticide degradates by the U.S. Geological Survey Organic Chemistry Research Laboratory. In 2022 samples were collected at two sites in the Bypass and at a comparison site on the Sacramento River from early August to mid-October. In 2023 zooplankton samples were collected at one site upstream of the Yolo Bypass in Northern California, four sites within the Bypass, one site downstream of the Bypass in the Cache Slough region, and at a comparison site on the Sacramento River from late July through early October. Samples were collected every two weeks by towing a 150-micron conical plankton net for 5 minutes by boat at each site. In the laboratory, zooplankton samples were filtered through a 63-micrometer sieve to separate the zooplankton and vegetation/detritus from the water. Large sticks, twigs, rocks, and leaves were rinsed with organic free water into the sieve and then discarded. The remaining mass in the sieve was transferred into 50 milliliter plastic centrifuge tubes, frozen overnight at -20 degrees Celsius, dehydrated completely using a freeze dryer, and then stored at -20 degrees Celsius. Immediately prior to analysis, each freeze-dried sample was homogenized and sub-sampled to a targeted final weight of 0.5 grams. Sub-samples were further homogenized with magnesium sulfate and extracted with acetonitrile at 100 degrees Celsius using an EDGE Automated Extraction System following procedures outlined in Black and others, (2023). Extracts were cleaned up using activated carbon and evaporated to 200 microliters in acetonitrile. Each sample had internal standards added and was analyzed by gas chromatography-tandem mass spectrometry for 27 pesticides and by liquid chromatography tandem mass spectrometry for 133 pesticides following methods described in Gross and others, (2024). A total of 15 pesticides were detected in the 18 zooplankton samples collected in 2022, and 16 of the samples contained multiple pesticides (up to 9 per sample). The most frequently detected compounds in 2022 were azoxystrobin, bifenthrin, fluridone, and p,p’-DDE. A total of 25 pesticides were detected in the 55 zooplankton samples collected in 2023, and 50 of the samples contained multiple pesticides (up to 16 per sample). The most frequently detected compounds in 2023 were azoxystrobin, bifenthrin, and p,p’-DDE.
DOI: 10.25574/01497
title: Chandra X-ray Observatory ObsId 01497
DOI: 10.15468/dl.b76tb5
title: Occurrence Download

description: A dataset containing 216 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Mabea angularis Hollander)"
 ]
}

 The dataset includes 216 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002337-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z9t8e8
title: Occurrence Download

description: A dataset containing 40583 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 {
 "or" : [
 "Geometry POLYGON((-109.64723 6.74421,-73.35277 6.74421,-73.35277 21.25579,-109.64723 21.25579,-109.64723 6.74421))",
 "Geometry POLYGON((-92.07912 14.48061,-92.01441 14.48002,-92.00406 14.50848,-92.0055 14.55305,-91.9876 14.58104,-91.98909 14.63565,-92.03099 14.65061,-92.07662 14.64911,-92.07437 14.57281,-92.10287 14.53643,-92.1195 14.5103,-92.07912 14.48061))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (CR, EW, EN, VU, NT)",
 "OccurrenceStatus is Present",
 "Year 2020-2024"
 ]
}

 The dataset includes 40583 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002336-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/8803475
title: Full TMDB Movies Dataset 2024 (1M Movies)
DOI: 10.5281/zenodo.12570967
title: parmoptila_jamesoni_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.12570968
title: parmoptila_jamesoni_spades_01.fasta.gz

description: .
DOI: 10.15468/dl.wxwfwj
title: Occurrence Download

description: A dataset containing 413221 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salvia rosmarinus Spenn."
 ]
}

 The dataset includes 413221 records from 831 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002319-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/dr1-njq-e91
title: †Productus Sowerby, 1814

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2rx-jqm-m4c
title: Proboscidea Illiger, 1811

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gdb-ndl-ep8
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hts-htb-g0v
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xg7-l2n-r9q
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7k6-kxc-pdz
title: Hibolithes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kh2-k6r-gtl
title: †Pseudocythere calcarata (Seguenza, 1880)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3yt-8kl-llg
title: Paracladiscites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l06-pay-k25
title: Halorites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/swc-dnk-1jd
title: †Metalegoceras sundaicum (Haniel, 1915)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/waz-33j-zle
title: Hibolithes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1lz-5p6-g1y
title: Rodentia Bowdich, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k30-3v6-bb4
title: Oosterella

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f6y-par-ml7
title: Pseudobelus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x9f-s05-hxc
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25607/w6iwee
title: Distribution records of Tunisian bryozoans reported in Northern Tunisian coasts since 2004

description: Tunisian bryozoans are poorly studied, their knowledge was based especially on some old works. An updated list counting 201 was conducted by d’Hondt & Mascarell (2004) by adding to the previous literature data a total of 22 species. More recently, some studies carried out in northern Tunisia by Ayari et al. (2008; 2012a; 2012b; 2014 and 2022), resulted in the identification of 72 bryozoan species, among which 26 species were newly added to the Tunisian fauna. The dataset of the Tunisian bryozoans reported by Ayari since 2004 groups those signalizations giving information about their distribution and habitats.
DOI: 10.3535/4a7-z56-2bx
title: Rodentia Bowdich, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wpb-na5-3k5
title: Cervidae Goldfuss, 1820

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0zh-6p7-rz2
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wsf-1jk-e4b
title: Hemipristis

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.vcy5ca
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cuscuta pentagona",
 "Country is Bangladesh",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018512-250811113504898/datasets/export for details.
DOI: 10.3535/76m-9kx-ykc
title: Halorites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/45c-cxr-7ty
title: Arcestes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/njd-xj1-nbz
title: †Belemnitida

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/21b-9k4-wjb
title: †Belemnitida

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q7s-xx0-0ep
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/an7-yww-q5l
title: †Belemnitida

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l3k-v01-1nx
title: †Belemnitida

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dbw-mqa-x6x
title: †Belemnitida

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/edd-72j-0ay
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2ed-sz3-gja
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dkj-qh2-kav
title: Malayites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g38-h03-4pp
title: Valanginites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/018-3xf-7p7
title: †Metalegoceras sundaicum (Haniel, 1915)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pm6-9qg-pjq
title: †Belemnitida

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a62-46z-zxe
title: Neohibolites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nqp-xbq-vgx
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.8gpw7c
title: Occurrence Download

description: A dataset containing 23355 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((0.6753045051636636 51.5865725858987, 0.6732202595222357 51.595285089189765, 0.668445788180579 51.603576734780646, 0.6611633686129761 51.61112857830939, 0.6516521272541856 51.617649988508084, 0.6402774251267831 51.622889879666566, 0.6274768407416825 51.62664643258513, 0.6137432851625461 51.628774919478175, 0.5996059085403826 51.62919332156028, 0.5856095549440175 51.62788551490055, 0.5722935872141485 51.624901896921145, 0.5601709319296609 51.6203574284135, 0.5497081846522746 51.61442716956786, 0.5413075680209977 51.60733948861926, 0.5352914529059987 51.59936721386735, 0.5318900406134738 51.590817080076626, 0.5312326685059185 51.58201788533874, 0.533343049760175 51.57330782195968, 0.5381385980450687 51.56502147331917, 0.5454338271148448 51.557476977367884, 0.5549476603980062 51.55096384677289, 0.5663143422642113 51.545731906749985, 0.5790975152055311 51.54198176600976, 0.5928069188907112 51.539857176140366, 0.6069170800818136 51.53943956263955, 0.6208872980234577 51.54074492938356, 0.6341821888005372 51.54372325040609, 0.6462920346112349 51.54826037133078, 0.6567521900139484 51.55418235057148, 0.6651608269483151 51.56126208038823, 0.6711943535166481 51.5692279429683, 0.6746199176747447 51.577774179740864, 0.6753045051636636 51.5865725858987))",
 "Year is one of (2019, 2020, 2021, 2022, 2023, 2024, 2025)",
 "KingdomKey is one of (Animalia, Fungi, Plantae)"
 ]
}

 The dataset includes 23355 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018509-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gutpy6
title: Occurrence Download

description: A dataset containing 474 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Pyrrhura griseipectus",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 474 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082735-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9qbzh3
title: Occurrence Download

description: A dataset containing 48374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Zootoca vivipara (Lichtenstein, 1823)"
 ]
}

 The dataset includes 48374 records from 372 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018165-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ruvzca
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidosperma gahnioides R.L.Barrett"
 ]
}

 The dataset includes 82 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007920-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sgakwq
title: Occurrence Download

description: A dataset containing 897219 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Lauraceae)"
 ]
}

 The dataset includes 897219 records from 1893 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018123-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/11970314
title: UNET Lung Segmentation Weights for Chest X Rays
DOI: 10.15468/dl.vryab7
title: Occurrence Download

description: A dataset containing 11194854 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Brazil",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 11194854 records from 1168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003211-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhg47m
title: Occurrence Download

description: A dataset containing 5429 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vaccinium bracteatum"
 ]
}

 The dataset includes 5429 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022349-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8pnuhk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Xanthocephalus xanthocephalus)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022350-250711103210423/datasets/export for details.
DOI: 10.15468/dl.8scwgv
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvelinus fontinalis",
 "Country is Montenegro",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022348-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.35qjgq
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lamprologus fasciatus"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022352-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15772786
title: D7.1-Synthesis of socio-economic  assessment methods, databases,  and studies addressing EBA and  other adaptation strategies - PRISMA systematic review

description: The systematic literature review followed PRISMA (Preferred Reporting Items for Systematic Reviews and MetaAnalysis) 2020 methodology to ensure consistency and quality of the results. A total of 6,501 records were initiallyidentified. After excluding duplicates, and studies not fulfilling eligibility criteria, 51 studies were finally included inthe literature review analysis. Studies were characterized in terms of its basic information (e.g., year of publication,type of publication), socio-economic assessment methods (e.g., name of the method, timing of the assessment,stakeholders’ involvement), adaptation context (e.g., type of adaptation measures addressed, climate change impactconsidered in the studies), metrics (e.g., monetary, and non-monetary metrics applied), and performance (e.g., mainquantitative and qualitative results of the assessments, policy recommendations provided)
DOI: 10.5281/zenodo.15772787
title: D7.1-Synthesis of socio-economic  assessment methods, databases,  and studies addressing EBA and  other adaptation strategies - PRISMA systematic review

description: The systematic literature review followed PRISMA (Preferred Reporting Items for Systematic Reviews and MetaAnalysis) 2020 methodology to ensure consistency and quality of the results. A total of 6,501 records were initiallyidentified. After excluding duplicates, and studies not fulfilling eligibility criteria, 51 studies were finally included inthe literature review analysis. Studies were characterized in terms of its basic information (e.g., year of publication,type of publication), socio-economic assessment methods (e.g., name of the method, timing of the assessment,stakeholders’ involvement), adaptation context (e.g., type of adaptation measures addressed, climate change impactconsidered in the studies), metrics (e.g., monetary, and non-monetary metrics applied), and performance (e.g., mainquantitative and qualitative results of the assessments, policy recommendations provided)