cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60712/si-id38693.2
title: StrainInfo SI-ID 38693.2

description: StrainInfo dataset 38693 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38694.3
title: StrainInfo SI-ID 38694.3

description: StrainInfo dataset 38694 about a strain of Actinoplanes brasiliensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38695.2
title: StrainInfo SI-ID 38695.2

description: StrainInfo dataset 38695 about a strain of Priestia megaterium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.15468/dl.rkbg9y
title: Occurrence Download

description: A dataset containing 131276 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "OccurrenceStatus is Present",
 "TaxonKey is Vulpes vulpes (Linnaeus, 1758)"
 ]
}

 The dataset includes 131276 records from 142 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003751-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id38696.3
title: StrainInfo SI-ID 38696.3

description: StrainInfo dataset 38696 about a strain of Eubacterium barkeri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38697.2
title: StrainInfo SI-ID 38697.2

description: StrainInfo dataset 38697 about a strain of Lysobacter. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38698.2
title: StrainInfo SI-ID 38698.2

description: StrainInfo dataset 38698 about a strain of Streptomyces xanthochromogenes. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38700.2
title: StrainInfo SI-ID 38700.2

description: StrainInfo dataset 38700 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38702.2
title: StrainInfo SI-ID 38702.2

description: StrainInfo dataset 38702 about a strain of Vibrio cholerae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38703.2
title: StrainInfo SI-ID 38703.2

description: StrainInfo dataset 38703 about a strain of Vibrio cholerae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38704.2
title: StrainInfo SI-ID 38704.2

description: StrainInfo dataset 38704 about a strain of Vibrio cholerae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38705.2
title: StrainInfo SI-ID 38705.2

description: StrainInfo dataset 38705 about a strain of Vibrio cholerae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38706.2
title: StrainInfo SI-ID 38706.2

description: StrainInfo dataset 38706 about a strain of Vibrio cholerae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.15468/dl.acg3cm
title: Occurrence Download

description: A dataset containing 150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "PublishingOrg is 95cb537c-74c5-4c1e-ae24-32e7ea08f380",
 "TaxonKey is one of (Dryopteris aemula (Aiton) Kuntze, Dryopteris oreades Fomin, Dryopteris carthusiana (Vill.) H.P.Fuchs, Dryopteris guanchica Gibby & Jermy, Dryopteris dilatata (Hoffm.) A.Gray, Dryopteris ×fraser-jenkinsii Gibby & Widén, Dryopteris ×asturiensis Fraser-Jenk. & Gibby, Dryopteris glabra (Brack.) Kuntze, Dryopteris hawaiiensis (Hillebr.) W.J.Rob., Dryopteris affinis (Lowe) Fraser-Jenk., Dryopteris corleyi Fraser-Jenk., Dryopteris pseudomas (Woll.) Holub & Pouzar)"
 ]
}

 The dataset includes 150 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003767-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id38708.2
title: StrainInfo SI-ID 38708.2

description: StrainInfo dataset 38708 about a strain of Mycobacterium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.15468/dl.cfjwgb
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Artemisia jacutica Drobow)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 165 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003696-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id38712.2
title: StrainInfo SI-ID 38712.2

description: StrainInfo dataset 38712 about a strain of Paenibacillus polymyxa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38713.3
title: StrainInfo SI-ID 38713.3

description: StrainInfo dataset 38713 about a strain of Blastococcus aggregatus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38714.3
title: StrainInfo SI-ID 38714.3

description: StrainInfo dataset 38714 about a strain of Thermoplasma acidophilum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38716.3
title: StrainInfo SI-ID 38716.3

description: StrainInfo dataset 38716 about a strain of Leucothrix mucor. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38717.3
title: StrainInfo SI-ID 38717.3

description: StrainInfo dataset 38717 about a strain of Leucothrix mucor. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38719.2
title: StrainInfo SI-ID 38719.2

description: StrainInfo dataset 38719 about a strain of Aliivibrio fischeri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38722.2
title: StrainInfo SI-ID 38722.2

description: StrainInfo dataset 38722 about a strain of Proteus mirabilis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38723.3
title: StrainInfo SI-ID 38723.3

description: StrainInfo dataset 38723 about a strain of Mesomycoplasma hyopneumoniae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38724.3
title: StrainInfo SI-ID 38724.3

description: StrainInfo dataset 38724 about a strain of Duganella zoogloeoides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38725.2
title: StrainInfo SI-ID 38725.2

description: StrainInfo dataset 38725 about a strain of Campylobacter fetus subsp. fetus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38727.3
title: StrainInfo SI-ID 38727.3

description: StrainInfo dataset 38727 about a strain of Megasphaera elsdenii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38728.2
title: StrainInfo SI-ID 38728.2

description: StrainInfo dataset 38728 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id38729.3
title: StrainInfo SI-ID 38729.3

description: StrainInfo dataset 38729 about a strain of Mycoplasmopsis primatum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.15468/dl.5aak4y
title: Occurrence Download

description: A dataset containing 7925 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Oxalis latifolia Kunth)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 7925 records from 328 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003695-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wvt9f7
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Oophaga sylvatica (Funkhouser, 1956)",
 "Year 2015-2025"
 ]
}

 The dataset includes 162 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004801-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d5gvph
title: Occurrence Download

description: A dataset containing 336 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "Geometry POLYGON((64.09488 -23.28591,176.64305 -23.28591,176.64305 21.71409,64.09488 21.71409,64.09488 -23.28591))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Antipatharia"
 ]
}

 The dataset includes 336 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004802-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xw8uzu
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-3.0",
 "Country is Denmark",
 "Geometry POLYGON((9.51331 56.44978,9.64333 56.44978,9.64333 56.53979,9.51331 56.53979,9.51331 56.44978))",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Acer pseudoplatanus L."
 ]
}

 The dataset includes 84 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004803-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zdhn3j
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pachyrhinus elegans (Couper, 1865)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 126 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004804-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/pj8e-b5vz
title: Measurement of Meteorology at Capo Granitola

description: Measurement of Meteorology at Capo Granitola
DOI: 10.48597/3xdm-bzrs
title: Measurement of Meteorology at Capo Granitola

description: Measurement of Meteorology at Capo Granitola
DOI: 10.48597/6kq5-3hkt
title: Measurement of Meteorology at Capo Granitola

description: Measurement of Meteorology at Capo Granitola
DOI: 10.48597/ay8d-5zer
title: Measurement of Meteorology at Capo Granitola

description: Measurement of Meteorology at Capo Granitola
DOI: 10.48597/bpmw-cqvn
title: Meteorology at Capo Granitola

description: Measurement of Meteorology at Capo Granitola
DOI: 10.48597/eaqc-x9bq
title: Measurement of Meteorology at Capo Granitola

description: Measurement of Meteorology at Capo Granitola
DOI: 10.48597/hfpj-hmz6
title: Measurement of Meteorology at Capo Granitola

description: Measurement of Meteorology at Capo Granitola
DOI: 10.48597/tbax-q4k3
title: Measurement of Meteorology at Capo Granitola

description: Measurement of Meteorology at Capo Granitola
DOI: 10.48597/tfxd-cwge
title: Measurement of Meteorology at Capo Granitola

description: Measurement of Meteorology at Capo Granitola
DOI: 10.48597/bdba-pqz4
title: Measurement of DBDPE and POPs (persistent organic pollutants) at Pallas (Matorova)

description: Measurement of DBDPE and POPs (persistent organic pollutants) at Pallas (Matorova)
DOI: 10.48597/fdbu-gpwg
title: Measurement of Meteorology at Capo Granitola

description: Measurement of Meteorology at Capo Granitola
DOI: 10.15468/dl.y58s4g
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Epipedobates anthonyi (Noble, 1921)",
 "Year 2020-2025"
 ]
}

 The dataset includes 176 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004805-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ajfjdx
title: Occurrence Download

description: A dataset listing the 203 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Asia, Europe, Oceania, Antarctica, Africa)",
 "TaxonKey is Scolopacidae",
 "Year 2014-2025"
 ]
}

 The dataset's 203 records were derived from 2817 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004797-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n8s3ez
title: Occurrence Download

description: A dataset containing 3154 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stellera chamaejasme L."
 ]
}

 The dataset includes 3154 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012305-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6pp3tm
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "Country is one of (India, Thailand, Myanmar, Viet Nam)",
 "DatasetKey is iNaturalist Research-grade Observations",
 "OccurrenceStatus is Present",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "TaxonKey is Teinopalpus imperialis Hope, 1843"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012306-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14361129
title: Quantifying the orientation dependence of diffraction contrast on magnetic STEM-DPC imaging of freestanding oxide thin films

description: These files accompany the article"Quantifying the orientation dependence of diffraction contrast on magnetic STEM-DPC imaging of freestanding oxide thin-films" for a  Special edition of Physical Review Materials. They consist of low-magnification 4D-STEM data and Python notebooks to process these files. These allow other users to reproduce the results seen in the paper, as well as test their own processing routines on the datasets from the paper.

The files with the ".zspy" extension are the 4D-STEM datasets, whereas the files with the ".ipynb" extension are the processing scripts. After installing the environments, as detailed below, the scripts can be run in order.
description: Installing Python environments

This section instructs how to install the Python environments used in this paper. Example instructions are given in Anaconda, with conda version 24.9.1. The pyxem environment is used for all notebooks aside from `s002_perform-phase-correlation.ipynb`, where the fpd environment is used instead.

If these installations do not work, the full environments are available in `pyxem-environment.yml` and `fpd-environment.yml`.



pyxem environment
The working environment uses the Python version 3.12.8:



conda create -n pyxem-environment python=3.12.8

conda activate pyxem-environment

The required packages can then be installed with the requirements-pyxem.txt file:



pip install -r requirements-pyxem.txt

 





fpd environment
The working environment uses the Python version 3.7.16:



conda create -n fpd-environment python=3.7

conda activate fpd-environment

The required packages can then be installed with the requirements-fpd.txt file:



pip install -r requirements-fpd.txt



 

Common metadata

Here is the metadata that is shared within the different tilt series:

Azimuthal tilt series

mode=LMSTEMnavigation_size=256x256navigation_step=80x80rotation=0°exposure=5msflyback=400mstemperature=-150.0°C

Polar tilt series

mode=LMSTEMnavigation_size=256x256navigation_step=45x45rotation=0°exposure=5msflyback=200mstemperature=-150.0°C
DOI: 10.15468/dl.gm4sjn
title: Occurrence Download

description: A dataset containing 271133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Drymonia fimbriata C.V.Morton, Epidendrum blepharistes Barker ex Lindl., Moussonia deppeana (Schltdl. & Cham.) Hanst., Artemisia tournefortiana Rchb., Lophiolepis ciliata (Murray) Del Guacchio, Bures, Iamonico & P.Caputo, Helianthus ×laetiflorus Pers., Petasites spurius (Retz.) Rchb., Pseudoarabidopsis toxophylla (M.Bieb.) Al-Shehbaz, O'Kane & R.A.Price, Sisymbrium polymorphum (Murray) Roth, Sisymbrium volgense M.Bieb. ex E.Fourn., Atriplex sagittata Borkh., Chenopodiastrum hybridum (L.) S.Fuentes, Uotila & Borsch, Bassia laniflora (S.G.Gmel.) A.J.Scott, Fumaria schleicheri Soy.-Will., Malvella sherardiana (L.) Jaub. & Spach, Orobanche cumana Wallr., Nigella arvensis L., Crataegus sanguinea Pall., Spiraea crenata L., Spiraea media Schmidt, Populus suaveolens Fisch., Symphyotrichum ×salignum (Willd.) G.L.Nesom, Crataegus dahurica (Dieck) Koehne, Fragaria moschata Duchesne, Heracleum sosnowskyi Manden., Populus laurifolia Ledeb., Spiraea ×rosalba Dippel, Spiraea ×rosalba Dippel, Artemisia caerulescens L., Grubovia sedoides (Pall.) G.L.Chu, Senecio doria L., Sium latifolium L., Urtica cannabina L., Trachyandra divaricata (Jacq.) Kunth, Boerhavia acutifolia (Choisy) J.W.Moore, Lepidium pseudotasmanicum Thell., Senecio bipinnatisectus Belcher, Anaphalis contorta (D.Don) Hook.fil., Senecio diaschides D.G.Drury, Amaranthus blitum subsp. blitum, Plantago pachyneura Steud., Solanum aculeastrum Dunal, Anthosachne scabra (R.Br.) Nevski, Oxalis thompsoniae B.J.Conn & P.G.Richards, Senecio skirrhodon DC., Senecio esleri C.J.Webb, Isolepis sepulcralis Steud., Juncus flavidus L.A.S.Johnson, Pentapogon R.Br., Berberis glaucocarpa Stapf)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 271133 records from 1365 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012295-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w6xfke
title: Occurrence Download

description: A dataset containing 76330 records in GBIF matching the query:
SELECT speciesKey, MIN(decimalLatitude) AS minLatitude, MAX(decimalLatitude) AS maxLatitude, MIN(decimalLongitude) AS minLongitude, MAX(decimalLongitude) AS maxLongitude, MIN("year") AS minYear, MAX("year") AS maxYear FROM occurrence WHERE speciesKey IS NOT NULL AND occurrenceStatus = 'PRESENT' AND countryCode = 'DE' AND hasCoordinate = TRUE AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') GROUP BY speciesKey

 The dataset's 76330 records were derived from 2874 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012301-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive13466.20251217.10
title: Saccharopolyspora qijiaojingensis Tang et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive13467.20250331.9.3
title: Saccharopolyspora antimicrobica Yuan et al. 2008 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.