cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/rvvmcdnf8p
title: Technologies for the production of bacterial cellulose

description: The process of systematically searching in scientific literature for advances in technologies for the large-scale production of bacterial cellulose is detailed, as well as its applications and strategies to increase production.
DOI: 10.17632/s3wjhzzdr3
title: Dataset for: Predictive analysis of gas holdup in bubble column using machine learning methods

description: Dataset for: Predictive analysis of gas holdup in bubble column using machine learning methods
The dataset used for the prediction of gas holdup in bubble column using machine learning methods: Artificial Neural Network, Extra Trees, Random Forest, and Support Vector Regression. Data is extracted from literature with the help of the Engauge Digitizer extraction tool. Data contains gas holdup as the target/dependent variable and 14 independent variables which are used for the prediction of the gas holdup. A detailed description of the methods used with optimized hyperparameters is published in Chemical Engineering Research and Design. DOI: https://doi.org/10.1016/j.cherd.2022.06.007
DOI: 10.6084/m9.figshare.11786514.v1
title: James_et_al_2020_BdA_GCP_data

description: James et al. (2020) - Mitigating systematic error in topographic models for geomorphic change detection: Accuracy, precision and considerations beyond off-nadir imagery<br>GCP coordinates in Swiss Grid CH1903/LV03 (EPSG::21781) for associated UAV surveys of la Borgne d'Arolla.<br>Notes:GCP ground survey data acquired by total station. Precision values are relative estimates (i.e. within the network) rather than absolute georeferencing, and were computed from least-squares network adjustment of data acquired from three stations. Absolute georeferencing was achieved using three dGPS-surveyed station positions; absolute georeferencing precision was not comuputed, but is not expected to be substantially worse.GCP 4 was covered by sediment prior to image capture, so not used in the photogrammetric processing.<br>See paper for further details.
DOI: 10.6084/m9.figshare.14182643.v1
title: wrfout_d01_0036-00009_20:00:00

description: Kite et al PNAS 2021 GCM output
DOI: 10.6084/m9.figshare.22822838.v2
title: Annual time-series 1-km maps of crop area and types in the conterminous US (CropAT-US) during 1850-2021

description: By integrating multi-source cross-scale inventories and satellite-based datasets, we reconstructed the annual crop density and crop type map (excluding summer idle/fallow, cropland pasture) in the contiguous US at 1km×1km resolution from 1850 to 2021. The annual crop density map depicts the distribution and fraction of cultivated land, while the crop type map displays the corresponding crop type. The developed datasets fill the data gap in lacking of crop type extent and type maps, which can support the environmental assessment and socioeconomic analysis related to agricultural activities. (Supplement to: Shuchao, Ye et al. (2023): Annual time-series 1-km maps of crop area and types in the conterminous US (CropAT-US): cropping diversity changes during 1850-2021.)
DOI: 10.6084/m9.figshare.25111502.v2
title: <b>A DNA origami device spatially controls CD95 signalling to induce immune tolerance in rheumatoid arthritis</b>

description: A pH responsive DNA origami device displays a precise geometric array of CD95 ligands to selectively induce activated immune cells death and elicit localized immune tolerance to alleviate rheumatoid arthritis
DOI: 10.6084/m9.figshare.4054689.v6
title: Wikipedia Talk Labels: Personal Attacks

description: This data set includes over 100k labeled discussion comments from English Wikipedia. Each comment was labeled by multiple annotators via Crowdflower on whether it contains a personal attack. We also include some demographic data for each crowd-worker. See our wiki for documentation of the schema of each file and our research paper for documentation on the data collection and modeling methodology. For a quick demo of how to use the data for model building and analysis, check out this ipython notebook.
DOI: 10.23645/epacomptox.5588680.v2
title: Chemistry Dashboard Data: Massbank Fragment File

description: A new “Tandem Mass Spectrometry Fragment Summary File” has been added to the downloads page for our mass spectrometry users. This file contains DTXSIDs, structural and neutral mass information from the CompTox Chemistry Dashboard mapped to precursor and MS/MS fragment summaries from mass spectral records submitted to European MassBank (MassBank.EU) and contained within the MASSBANKREF and MASSBANKEUSP lists. For more details download the ZIP file and examine the README file.
DOI: 10.6084/m9.figshare.28322524.v1
title: Transcriptomic analysis of long non-coding RNA and mRNA in pigeon squab pectoralis muscle development

description: 1. As one of the most widespread poultry species in the world, pigeons have been bred primarily for meat production due to their high nutritional value and good taste. Their breast muscle is an important economic product as it determines the yield and quality of meat from pigeons. 2. Long non-coding RNA (lncRNA) plays an important role in transcription and post-transcriptional regulation, but research on the molecular mechanisms of this process in pectoral muscle development in pigeon squabs is lacking. 3. Herein, RNA sequencing was used to analyse these mechanisms in pigeon squabs at different ages: 3(D3), 14 (D14) and 25 d (D25). A total of 56 169 differentially expressed (DE) lncRNA and 29 939 DE mRNA were identified among the three age groups, of which 483 were differentially co-expressed. A lncRNA–mRNA interaction network was constructed, and cis-trans identification, Gene Ontology (GO), and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis were performed. 4. The results showed that lncRNA affected muscle development through the cell cycle, cytoskeleton in muscle cells, motor proteins, extracellular matrix (ECM) receptor interaction, focal adhesion, and other signalling pathways. Five DE lncRNA and mRNA were selected (<i>LTCONS_00073284,LTCONS_00012834</i>, <i>LTCONS_00032767</i>, <i>LTCONS_00041298</i>, <i>LTCONS_00028245;TNNC1</i>, <i>XIRP1</i>, <i>PITX3</i>, <i>COL4A6</i>, and <i>TNNT3</i>). Their expression patterns were validated by reverse transcription-quantitative polymerase chain reaction (RT-QPCR), which were consistent with the high-through sequencing results.
DOI: 10.17632/fzkffnp8ft
title: Systematic Review Exercise, Breathwork and Combined Exercise and Breathwork, Acute Interventions for Stress Reduction in Healthy Adults: A Systematic Review and Meta-Analysis

description: This review's primary analysis compared the relationship between exercise, breathwork and combined interventions in outcome measures that included any reference to acute stress measurements, as outlined in Table 1. Separate subgroup meta-analyses examined the relationship between intervention duration, categorised as short, medium and long and outcome measures. An additional subgroup meta-analysis was conducted to examine the relationship between low, moderate, vigorous and self-moderated exercise intervention intensity and outcome measures. All meta-analyses were conducted using random-effect models (Borenstein & Rothstein, 1999) on pooled studies to compare standardised mean differences between conditions pre-post exercise, breathwork, combined, and controls to compute an estimate Hedges' g ES, along with 95% confidence intervals (CI) for outcome measures. The Hedges' g threshold was set at 0.2 small, 0.5 medium and 0.8 large, along with 95% CI around the estimated ES (differences between intervention and control groups) (Cohen, 1992). An alpha level of P < 0.05 was used to determine significance. All statistics were analysed using Comprehensive Meta-Analysis (V3, Biostat, Englewood, USA) and presented as Forrest plots (where applicable). Heterogeneity between studies was measured using the I2 statistic (Higgins & Thompson, 2002), and the threshold for cut-off percentage points of 25% (low), 50% (moderate) and 75% (high) was used. The risk of publication bias was tested using Egger's regression significance test and funnel plot symmetry/asymmetry (Egger et al., 1997).
DOI: 10.17632/g88ykpy5ck
title: Kerogen_Pyrolysis_Ethane_13C–13C_Clumped_Isotope

description: Microsoft EXCEL files containing the results of ethane 13C–13C clumped isotopologues and calculations to obtain Figs. 1, 2, 4, 6-8, S1, S4, and S5 in the paper "Clumped 13C–13C isotopes of ethane from laboratory pyrolysis of kerogen: Implications for intramolecular 13C distributions".
DOI: 10.6084/m9.figshare.16704937.v1
title: XRD data of smithsonite, pyrophyllite and quartz

description: The XRD original data of smithsonite, pyrophyllite and quartz.
DOI: 10.6084/m9.figshare.5126128.v1
title: Supplementary Material for: Intracranial Stenosis: Impact of Randomized Trials on Treatment Preferences of US Neurologists and Neurointerventionists

description: <b><i>Background and Purpose:</i></b> Medical and endovascular treatment options for stroke prevention in patients with symptomatic intracranial stenosis have evolved over the past several decades, but the impact of 2 major multicenter randomized stroke prevention trials on physician practices has not been studied. We sought to determine changes in US physician treatment choices for patients with intracranial atherosclerotic stenosis (ICAS) following 2 NIH-funded clinical trials that studied medical therapies (antithrombotic agents and risk factor control) and percutaneous transluminal angioplasty and stenting (PTAS). <b><i>Methods:</i></b> Anonymous surveys on treatment practices in patients with ICAS were sent to physicians at 3 time points: before publication of the NIH-funded Warfarin-Aspirin Symptomatic Intracranial Disease (WASID) trial (pre-WASID survey, 2004), 1 year after WASID publication (post-WASID survey, 2006) and 1 year after the publication of the NIH-funded Stenting and Aggressive Medical Management for Preventing Recurrent Stroke in Intracranial Stenosis (SAMMPRIS) trial (post-SAMMPRIS survey, 2012). Neurologists were invited to participate in the pre-WASID survey (n = 525). Neurologists and neurointerventionists were invited to participate in the post-WASID (n = 598) and post-SAMMPRIS (n = 2,080) surveys. The 3 surveys were conducted using web-based survey tools delivered by E-mail, and a fax-based response form delivered by E-mail and conventional mail. Data were analyzed using the χ<sup>2</sup> test. <b><i>Results:</i></b> Before WASID, there was equipoise between warfarin and aspirin for stroke prevention in patients with ICAS. The number of respondents who recommended antiplatelet treatment for ICAS increased across all 3 surveys for both anterior circulation (pre-WASID = 44%, post-WASID = 85%, post-SAMMPRIS = 94%) and posterior circulation (pre-WASID = 36%, post-WASID = 74%, post-SAMMPRIS = 83%). The antiplatelet agent most commonly recommended after WASID was aspirin, but after SAMMPRIS it was the combination of aspirin and clopidogrel. The percentage of neurologists who recommended PTAS in &gt;25% of ICAS patients increased slightly from pre-WASID (8%) to post-WASID surveys (12%), but then decreased again after SAMMPRIS (6%). The percentage of neurointerventionists who recommended PTAS in &gt;25% of ICAS patients decreased from post-WASID (49%) to post-SAMMPRIS surveys (17%). <b><i>Conclusions:</i></b> The surveyed US physicians' recommended treatments for ICAS differed over the 3 survey periods, reflecting the results of the 2 NIH-funded clinical trials of ICAS and suggesting that these clinical trials changed practice in the USA.
DOI: 10.17632/pzd2n7f83k
title: Multisite tDCS and neuromuscular performance during velocity-based training

description: Acute effect of transcranial direct current stimulation offline over orbital prefrontal cortex and motor cortex on neuromuscular performance during velocity-based training
DOI: 10.6084/m9.figshare.12608093.v1
title: Supplementary Material for: Association between PD-L1 Expression and the Prognosis and Clinicopathologic Features of Renal Cell Carcinoma: A Systematic Review and Meta-Analysis

description: The expression of programmed cell death-ligand 1 (PD-L1) and its correlation with the prognosis and clinicopathologic features of renal cell carcinoma (RCC) remain controversial to date. Concerning this issue, we had conducted a meta-analysis of relevant studies searched in the Web of Science, PubMed, EMBASE, and Cochrane Library databases. The Newcastle-Ottawa quality assessment scale was applied to assess the quality of the included studies. The hazard ratio (HR) and its corresponding 95% confidence intervals (CIs) were collected by Stata 12.0 and used for the results of overall survival (OS) and disease-free survival (DFS). A total of 1,644 patients in 8 studies were included in this meta-analysis. Results showed that PD-L1 expression significantly correlated with OS (HR = 1.98, 95% CI: 1.22–3.22, <i>Z</i> = 2.77, <i>p</i> = 0.006) and DFS (HR = 3.70, 95% CI: 2.07–6.62, <i>Z</i> = 4.40, <i>p</i> = 0.0001) in ccRCC. Subgroup analysis indicated that PD-L1 expression significantly correlated with the lymph-gland transfer ratio (HR = 2.45, 95% CI: 1.02–5.92, <i>Z</i> = 1.99, <i>p</i> = 0.05) and tumor necrosis (HR = 6.05, 95% CI: 3.78–9.67, <i>Z</i> = 7.51, <i>p</i> &lt; 0.00001). This meta-analysis suggests that PD-L1 expression is a valuable prognostic tool for patients with ccRCC. Subgroup analyses demonstrated that it was helpful for screening patients with RCC who need anti-PD-1/PD-L1 treatment and support them to benefit from such immune-targeted therapy.
DOI: 10.6084/m9.figshare.25990117.v1
title: Germline missense MSH2 VUS - 7

description: Molecular dynamics simulation of the VUS based on the ClinVar database, the simulation is up to 100 ns.
DOI: 10.6084/m9.figshare.29151275.v1
title: Fig 2.png

description: Population Structure
DOI: 10.6084/m9.figshare.4702672.v1
title: Supplementary Material for: Influence of Gestational Age on Dead Space and Alveolar Ventilation in Preterm Infants Ventilated with Volume Guarantee

description: <b><i>Background:</i></b> Ventilated preterm infant lungs are vulnerable to overdistension and underinflation. The optimal ventilator-delivered tidal volume (<i>V</i><sub>T</sub>) in these infants is unknown and may depend on the extent of alveolarisation at birth. <b><i>Objectives:</i></b> We aimed to calculate respiratory dead space (<i>V</i><sub>D</sub>) from the molar mass (MM) signal of an ultrasonic flowmeter (<i>V</i><sub>D,MM</sub>) in very preterm infants on volume-targeted ventilation (<i>V</i><sub>T</sub> target, 4-5 ml/kg) and to study the association between gestational age (GA) and <i>V</i><sub>D,MM</sub>-to-<i>V</i><sub>T</sub> ratio (<i>V</i><sub>D,MM</sub>/<i>V</i><sub>T</sub>), alveolar tidal volume (<i>V</i><sub>A</sub>) and alveolar minute volume (AMV). <b><i>Methods:</i></b> This was a single-centre, prospective, observational, cohort study in a neonatal intensive care unit. Tidal breathing analysis was performed in ventilated very preterm infants (GA range 23-32 weeks) on day 1 of life. <b><i>Results:</i></b> Valid measurements were obtained in 43/51 (87%) infants. Tidal breathing variables were analysed using multivariable linear regression. <i>V</i><sub>D,MM</sub>/<i>V</i><sub>T</sub> was negatively associated with GA after adjusting for birth weight Z score (p<i> &lt;</i> 0.001, R<sup>2</sup> = 0.26). This association was primarily influenced by the appliance dead space. Despite similar <i>V</i><sub>T</sub>/kg and <i>V</i><sub>A</sub>/kg across all studied infants, respiratory rate and AMV/kg increased with GA. <b><i>Conclusions:</i></b><i>V</i><sub>D,app</sub> rather than anatomical <i>V</i><sub>D</sub> is the major factor influencing increased <i>V</i><sub>D,MM</sub>/<i>V</i><sub>T</sub> at a younger GA. A volume guarantee setting of 4-5 ml/kg in the Dräger Babylog® 8000 plus ventilator may be inappropriate as a universal target across the GA range of 23-32 weeks. Differences between measured and set <i>V</i><sub>T</sub> and the dependence of this difference on GA require further investigation.
DOI: 10.17632/5m9nzvtph6
title: Reflexiones sobre la Enseñanza de la Redacción Argumentativa: Entre la Tradición y la Innovación

description: Este documento reflexiona sobre la efectividad de los métodos tradicionales e innovadores en la enseñanza de la redacción argumentativa. Se examinan métodos como la instrucción directa y los ejercicios repetitivos, contrastándolos con enfoques más dinámicos como la gamificación y el aprendizaje basado en proyectos. A pesar de la implementación de estos métodos, los resultados en la mejora de las habilidades argumentativas han sido lentos, lo que sugiere la necesidad de seguir investigando estrategias más efectivas. Se concluye que una combinación de enfoques es clave para motivar y desarrollar las competencias argumentativas en los estudiantes.
DOI: 10.17632/fcx7tcdgrv
title: MRI raw data

description: This is raw data of my MRI data.The file contains three subfolders.The three folders are the mania group, the remission group and the control group.
DOI: 10.17632/fvrhvnfvnv
title: Marketing

description: Marketing
DOI: 10.17632/rjz7ckg6jn
title: New version announcement for TaylUR, an arbitrary-order diagonal automatic differentiation package for Fortran 95

description: Abstract We present a new version of TaylUR, a Fortran 95 module to automatically compute the numerical values of a complex-valued function's derivatives with respect to several variables up to an arbitrary order in each variable, but excluding mixed derivatives. The new version fixes a potentially serious bug in the code for exponential-related functions that could corrupt the imaginary parts of derivatives, as well as being compatible with a wider range of compilers. Title of program: TaylUR Catalogue Id: ADXR_v2_0 Nature of problem Problems that require potentially high orders of derivatives with respect to some variables or derivatives of complex-valued functions, such as e.g. expansions of Feynman diagrams in particle masses in perturbative Quantum Field Theory. Versions of this program held in the CPC repository in Mendeley Data ADXR_v1_0; TaylUR; 10.1016/j.cpc.2005.12.016 ADXR_v2_0; TaylUR; 10.1016/j.cpc.2007.03.008 ADXR_v3_0; TaylUR; 10.1016/j.cpc.2009.10.025 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.6084/m9.figshare.2060439.v2
title: Auxiliary File 2 - HEC-2 and HEC-RAS ASCII Text Input File for 1979 Conestoga River, Lancaster County, Pennsylvania Flood Insurance Study

description: A US Army Corps of Engineers HEC-2 input file in ASCII text format suitable for input into HEC-RAS.<br>
DOI: 10.6084/m9.figshare.24822546.v1
title: Pan-genome of <i>Puccinia striiformis</i> f. sp. <i>tritici</i> (<i>Pst</i>)

description: We built a pan-genome of <i>Pst</i> by including 10 isolates with different pathotypes from four continents to evaluate the diversity in genomic architecture and gene content.
DOI: 10.6084/m9.figshare.25637094.v1
title: <b>Identification and functional characterization of </b><b><i>Meloidogyne javanica</i></b><b> pathogenicity factors</b>

description: This study focuses on the identification and functional characterization of <i>Meloidogyne javanica </i>secreted proteins
DOI: 10.6084/m9.figshare.9312107.v1
title: Supplementary Material for: Age Differences in Emotion Regulation and Facial Muscle Reactivity to Emotional Films

description: <b><i>Background:</i></b> Age-related declines in many cognitive abilities are common in healthy aging. However, the ability to effectively regulate emotions is preserved, and possibly even enhanced, in late adulthood. This capacity has been examined most commonly in relation to low-intensity emotional stimuli that typically involve static pictures. Evidence is suggesting that older adults may become overwhelmed when exposed to emotional cues of heightened intensity. <b><i>Objective:</i></b> In the current study, we assessed whether older adults retain the ability to regulate emotions successfully when exposed to more emotionally evocative (e.g., dynamic) stimuli. <b><i>Methods:</i></b> Young and older adults were instructed to regulate, using expressive suppression, their outward behavioral expression of emotions while viewing dynamic stimuli involving amusing and sad films. Facial reactivity, as indexed using electromyography, self-rated emotional experience, and memory for the stimuli were assessed. <b><i>Results:</i></b> The results showed that, relative to young adults, older adults were unable to suppress <i>zygomaticus</i> (cheek) activity to amusing films or <i>corrugator</i> (brow) reactivity to sad films, which is likely due to their relatively reduced facial muscle reactivity. Expressive suppression did not affect young or older adults’ subjective feelings or memory for the stimuli. <b><i>Conclusion:</i></b> Our findings suggest that there are age differences in facial muscle reactivity to amusing and sad cues of heightened intensity. These findings suggest that older adults’ ability to effectively regulate emotions may be limited, at least with expressive suppression, in the context of high-intensity emotional cues. Further research is needed to investigate possible exceptions the preservation of emotion regulation in older adults.
DOI: 10.6084/m9.figshare.21512436.v1
title: Data: Predation risk and personality influence seed predation and dispersal by a scatter-hoarding small mammal

description: These data and code accompany the paper: "Merz et al 2022. Predation risk and personality influence seed predation and dispersal by a scatter-hoarding small mammal". These data can be used to replicate all main analyses in the paper. These data are not intended for use in other publications. Please contact the authors if you would like to collaborate on a project using these data. If additional comments or questions arise, please contact Alessio Mortelliti (alessio.mortelliti@maine.edu).
DOI: 10.6084/m9.figshare.22146800.v2
title: Supplementary data to rapid grain boundary diffusion in foraminifera tests biases paleotemperature records

description: Excel datasheet consisting of 38400 foraminifera isotope compositions and the resulting paleotemperatures corrected for the effects of grain boundary diffusion.
DOI: 10.17632/hrdmcjws46
title: Vocal Fry & Speaker Gender Perception Data

description: This is the data that correlates with the manuscript: Impact of Vocal Fry and Speaker Gender on Listener Perceptions of Speaker Personal Attributes. 29 listeners rated speech samples varying in presence of vocal fry, fundamental frequency, rate of speech, and speaker gender.
DOI: 10.6084/m9.figshare.7850057.v1
title: Additional file 1: of The tolerability of single low dose primaquine in glucose-6-phosphate deficient and normal falciparum-infected Cambodians

description: List of G6PD status with G6PD enzyme activity (measured in a subset), baseline reticulocyte count and haemoglobin concentration and the result of the fluorescent spot test. (XLSX 13 kb)