cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16741648
title: R2Vul - Data and Models

description: This Zenodo repository contains the datasets and models for our paper "R2Vul: Learning to Reason about Software Vulnerabilities with Reinforcement Learning and Structured Reasoning Distillation". 

Datasets

raw_dataset.json - the raw dataset mined from NVD.

r2vul_dataset.zip - the dataset used for fine-tuning and testing.

external_java_test.zip - the external, manually annotated Java dataset (RQ2).

Models and Checkpoints

cls.zip - includes all models checkpoints fine-tuned using CLS.

sft.zip - includes all models checkpoints fine-tuned using SFT.

orpo.zip - includes all models checkpoints fine-tuned using ORPO (R2Vul).

MSIVD.zip - downloaded from https://zenodo.org/records/11403208 (codellama-13b - bigvul_expl).

VulLLM.zip - downloaded from https://zenodo.org/records/10677069 (codellama-13b-multi-r16-2048).
DOI: 10.15468/dl.3b9efe
title: Occurrence Download

description: A dataset containing 2616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (EOD – eBird Observation Dataset, iNaturalist Research-grade Observations, MVZ Bird Observations (Arctos), WFVZ Bird Collections, Observation.org, Nature data from around the World, MVZ Bird Collection (Arctos), UCLA Donald R. Dickey Bird and Mammal Collection, CAS Ornithology (ORN), Macaulay Library Audio and Video Collection, Point Reyes Bird Observatory - Point Counts)",
 "GadmGid is USA.5_1",
 "TaxonKey is Centrocercus urophasianus"
 ]
}

 The dataset includes 2616 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012988-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s8gjpd
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Specimen, Living Specimen, Occurrence evidence)",
 "Country is Colombia",
 "DatasetKey is one of (Herbario Pontificia Universidad Javeriana, Herbario Nacional Colombiano (COL), Field Museum of Natural History (Botany) Seed Plant Collection, Herbario Universidad de Antioquia (HUA), Herbario Joaquín Antonio Uribe de Medellín (JAUM), Herbario Universidad de Caldas - FAUC, Colección general del plantas vasculares del Herbario JBB, iNaturalist Research-grade Observations, ICN - Universidad Nacional de Colombia, Tropicos MO Specimen Data)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lycaste"
 ]
}

 The dataset includes 39 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012989-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qrgzwn
title: Occurrence Download

description: A dataset containing 860 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Melanocharis longicauda)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 860 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012990-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8wbp3u
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAC9258"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012991-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.efjeyr
title: Occurrence Download

description: A dataset containing 7492 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lamium album",
 "Geometry POLYGON ((26.04335 1.226334, 135.0263 1.226334, 135.0263 55.38525, 26.04335 55.38525, 26.04335 1.226334))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7492 records from 148 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012992-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ar742f
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Synodontis leopardus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012994-250802193616735/datasets/export for details.
DOI: 10.15468/dl.34kbxv
title: Occurrence Download

description: A dataset containing 2305 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Melanocharis nigra)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 2305 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012993-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wfn4rj
title: Occurrence Download

description: A dataset containing 72972 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Melaniparus niger)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 72972 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012967-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wpsbpg
title: Occurrence Download

description: A dataset containing 256288455 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Podiceps cristatus, Anas acuta, Passer montanus, Phalacrocorax carbo, Motacilla alba, Chroicocephalus ridibundus, Cygnus olor, Haliaeetus leucocephalus, Zonotrichia albicollis, Cyanistes caeruleus, Parus major, Columba livia, Poecile atricapillus, Haemorhous mexicanus, Agelaius phoeniceus, Passer domesticus, Cardinalis cardinalis, Sturnus vulgaris, Corvus brachyrhynchos, Anas platyrhynchos)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 256288455 records from 9605 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012936-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28832192
title: Taeniamia zosterophora Beagle Files

description: Beagle files for analysis of adaptation and changes in genetic diversity in ANGSD over the last century in Taeniamia zosterophora caught in the Philippines.
DOI: 10.15468/d7gugd
title: Naturalis Biodiversity Center (NL) - Mammalia

description: Database contains specimen records from the Mammalia collection of the Naturalis Biodiversity Center (Leiden, Netherlands). The zoological specimens come from the National Museum of Natural History (RMNH; Rijksmuseum voor Natuurlijke Historie), later National Museum of Natural History, Naturalis in Leiden and the Zoological Museum Amsterdam (ZMA) and new acquisitions. This database replaces the dataset "Zoological Museum Amsterdam, University of Amsterdam (NL) – Mammalia" which was hosted earlier on the GBIF dataportal and contains many new and updated records, especially from the RMNH collection. The old registration numbers of the former institutions (RMNH, ZMA) are also mentioned in the dataset.
DOI: 10.48580/dgswy.v15
title: Inventory of Vascular Plants in Xinjiang Xiata Ancient Road National Forest Park
DOI: 10.48580/dgswx.v15
title: Plant Inventory of the Western Tianshan National Nature Reserve in Xinjiang, China
DOI: 10.48580/dgqmq.v15
title: The checklist of wild vascular plants in the Jimunai Alpine Periglacial National Wetland Park
DOI: 10.5281/zenodo.18681508
title: Thermographic data for manuscript Mus.3356-P-513,2 (SLUB)

description: This data set contains thermographic images for the visualisation of watermarks. An IRCAM Equus 327k with Watermark Imager software (Fraunhofer) version 8.416 (R2016b) was used.
DOI: 10.5281/zenodo.18681509
title: Thermographic data for manuscript Mus.3356-P-513,2 (SLUB)

description: This data set contains thermographic images for the visualisation of watermarks. An IRCAM Equus 327k with Watermark Imager software (Fraunhofer) version 8.416 (R2016b) was used.
DOI: 10.15468/dl.rk5tge
title: Occurrence Download

description: A dataset containing 683841 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Esox lucius",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 683841 records from 678 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027194-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18681527
title: СОЦИАЛЬНЫЕ ФАКТОРЫ В ПРОЯВЛЕНИИ ПРОФЕССИОНАЛЬНОЙ ОРИЕНТАЦИИ У БУДУЩИХ ПЕДАГОГОВ

description: В данной статье рассматриваются проявления профессиональной направленности у будущих учителей, а также методологические основы, условия, возможности и методы профессионального самосознания. Особенности, которые необходимо учитывать будущему педагогу, освещаются следующим образом.
DOI: 10.5281/zenodo.18681528
title: СОЦИАЛЬНЫЕ ФАКТОРЫ В ПРОЯВЛЕНИИ ПРОФЕССИОНАЛЬНОЙ ОРИЕНТАЦИИ У БУДУЩИХ ПЕДАГОГОВ

description: В данной статье рассматриваются проявления профессиональной направленности у будущих учителей, а также методологические основы, условия, возможности и методы профессионального самосознания. Особенности, которые необходимо учитывать будущему педагогу, освещаются следующим образом.
DOI: 10.15468/dl.6rqfz5
title: Occurrence Download

description: A dataset containing 214 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((74.75536 13.12735,74.7847 13.12735,74.7847 13.1499,74.75536 13.1499,74.75536 13.12735))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 214 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027238-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18361308
title: Land Surface Temperature (LST) Dataset – MOD11A1 v061 (June–August 2023), Region of Attica (From National Observatory of Athens)

description: This archive contains Land Surface Temperature (LST) data provided by the National Observatory of Athens (NOA) for the Region of Attica. The dataset covers the summer period (June–August 2023) and is based on the MODIS MOD11A1 Version 061 product with a spatial resolution of 1 km.

The zip file includes:





Raw LST data as received from NOA




Intermediate transformed datasets, including preprocessing steps such as reprojection, clipping to the Region of Attica, and formatting for analysis




Final processed LST rasters used as input in the wildfire and heat-related risk assessment workflows



The LST dataset was used to characterize surface temperature conditions during the summer of 2023 and to support hazard modeling and susceptibility analysis. All transformations ensured spatial alignment with the official administrative boundary of the Region of Attica and harmonization with other raster layers used in the project.
DOI: 10.5281/zenodo.18361309
title: Land Surface Temperature (LST) Dataset – MOD11A1 v061 (June–August 2023), Region of Attica (From National Observatory of Athens)

description: This archive contains Land Surface Temperature (LST) data provided by the National Observatory of Athens (NOA) for the Region of Attica. The dataset covers the summer period (June–August 2023) and is based on the MODIS MOD11A1 Version 061 product with a spatial resolution of 1 km.

The zip file includes:





Raw LST data as received from NOA




Intermediate transformed datasets, including preprocessing steps such as reprojection, clipping to the Region of Attica, and formatting for analysis




Final processed LST rasters used as input in the wildfire and heat-related risk assessment workflows



The LST dataset was used to characterize surface temperature conditions during the summer of 2023 and to support hazard modeling and susceptibility analysis. All transformations ensured spatial alignment with the official administrative boundary of the Region of Attica and harmonization with other raster layers used in the project.
DOI: 10.15468/dl.zqk84d
title: Occurrence Download

description: A dataset containing 110984 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agaricia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 110984 records from 153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027197-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5w6kyp
title: Occurrence Download

description: A dataset containing 16100180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coleoptera)",
 "TaxonomicStatus is one of (Accepted, Synonym)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year is greater than 1980",
 "CoordinateUncertaintyInMeters is less than or equal to 9275"
 ]
}

 The dataset includes 16100180 records from 3760 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027219-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2j5rw3
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Anthoscopus sylviella)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080118-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.urbfcx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macaca fascicularis",
 "Country is Cuba",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080117-250717081556266/datasets/export for details.
DOI: 10.6084/m9.figshare.29716118
title: Supplemental Table S1 - Feature Categories from Evolving topological color landscape unravels the final stages of pistachio nut development and the incidence of blank nuts.

description: This table contains the information from Figure 14, Figure 15, and Figure 16. The CT1 columns correspond to the y-axises in Figure 14 A and B. The CT2 columns correspond to the y-axises in Figure 15 A and B. The CT3 columns correspond to the y-axises in Figure 16 A and B. The rows are the different features.
DOI: 10.6084/m9.figshare.29716118.v1
title: Supplemental Table S1 - Feature Categories from Evolving topological color landscape unravels the final stages of pistachio nut development and the incidence of blank nuts.

description: This table contains the information from Figure 14, Figure 15, and Figure 16. The CT1 columns correspond to the y-axises in Figure 14 A and B. The CT2 columns correspond to the y-axises in Figure 15 A and B. The CT3 columns correspond to the y-axises in Figure 16 A and B. The rows are the different features.
DOI: 10.15468/dl.48rupq
title: Occurrence Download

description: A dataset containing 143 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macaca fascicularis",
 "Country is Mauritius",
 "HasCoordinate is true"
 ]
}

 The dataset includes 143 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080120-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/r85-f96-xcv
title: Polypodium levigatum Cav.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/t7q-vf7-3cc
title: Amphipogon strictus R. Br.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/ccn9h3j
title: CCDC 604937: Experimental Crystal Structure Determination

description: Related Article: C.N.Kato, Y.Kasahara, K.Hayashi, A.Yamaguchi, T.Hasegawa, K.Nomiya|2006|Eur.J.Inorg.Chem.|2006|4834|doi:10.1002/ejic.200600479
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/5t2-95l-944
title: Tortula brevissima Schiffn.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/rvj-w54-7gh
title: Lasiacis ligulata Hitchc. & Chase

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/ccn9h4k
title: CCDC 604938: Experimental Crystal Structure Determination

description: Related Article: C.N.Kato, Y.Kasahara, K.Hayashi, A.Yamaguchi, T.Hasegawa, K.Nomiya|2006|Eur.J.Inorg.Chem.|2006|4834|doi:10.1002/ejic.200600479
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccnfy99
title: CCDC 609221: Experimental Crystal Structure Determination

description: Related Article: Qing-Yan Liu, Yu-Ling Wang, Li Xu|2006|Eur.J.Inorg.Chem.|2006|4843|doi:10.1002/ejic.200600532
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/9t2-jzl-7wt
title: Bromus hordeaceus L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/bnx-gfh-k67
title: Philonotis gracillima Ångstr.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/z8c-whx-fym
title: Amblystegium auriculatum Bryhn

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/ccnfybb
title: CCDC 609222: Experimental Crystal Structure Determination

description: Related Article: Qing-Yan Liu, Yu-Ling Wang, Li Xu|2006|Eur.J.Inorg.Chem.|2006|4843|doi:10.1002/ejic.200600532
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccnfycc
title: CCDC 609223: Experimental Crystal Structure Determination

description: Related Article: Qing-Yan Liu, Yu-Ling Wang, Li Xu|2006|Eur.J.Inorg.Chem.|2006|4843|doi:10.1002/ejic.200600532
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.10490.08644
title: Mature glomeruli count from OPT analysis of control kidney
DOI: 10.3535/4qb-v0q-dn0
title: Caloplaca lucens var. striolata Zahlbr.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/y1z-ack-1r5
title: Plumbago scandens L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/ccndmzm
title: CCDC 607971: Experimental Crystal Structure Determination

description: Related Article: J.A.Wright, A.A.Danopoulos, W.B.Motherwell, R.J.Carroll, S.Ellwood, J.Sassmannshausen|2006|Eur.J.Inorg.Chem.|2006|4857|doi:10.1002/ejic.200600559
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.19088.40961
title: REVIEW CONFIRMATION CERTIFICATE: Entropy
DOI: 10.3535/c59-f0r-zx1
title: Hieracium apricorum subsp. subpallescens (Beck) Gottschl.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/h9e-rm7-gfl
title: Tibouchina angustifolia var. lanceolata Cogn.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/sj4-q0p-c68
title: Sideroxylon obtusifolium (Roem. & Schult.) T. D. Penn.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/ccndn0p
title: CCDC 607972: Experimental Crystal Structure Determination

description: Related Article: J.A.Wright, A.A.Danopoulos, W.B.Motherwell, R.J.Carroll, S.Ellwood, J.Sassmannshausen|2006|Eur.J.Inorg.Chem.|2006|4857|doi:10.1002/ejic.200600559
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.