cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6iypsg
title: Occurrence Download

description: A dataset listing the 78055 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((7.46264 43.60319,7.27906 38.43669,10.13328 38.61529,11.86254 36.58928,16.57439 36.70466,18.90322 40.17854,17.81328 42.24742,12.63703 44.80086,13.82051 45.94754,13.93094 46.67095,12.06734 47.12358,8.28081 46.7615,6.50704 45.07098,7.46264 43.60319))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 78055 records were derived from 1137 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008495-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kjs4mm
title: Occurrence Download

description: A dataset containing 1640 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Contopus ochraceus P.L.Sclater & Salvin, 1869"
 ]
}

 The dataset includes 1640 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036627-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x2az26
title: Occurrence Download

description: A dataset containing 155 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Berlinia giorgii De Wild."
 ]
}

 The dataset includes 155 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047165-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b8xaxk
title: Occurrence Download

description: A dataset containing 3293233 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((7.46264 43.60319,7.27906 38.43669,10.13328 38.61529,11.86254 36.58928,16.57439 36.70466,18.90322 40.17854,17.81328 42.24742,12.63703 44.80086,13.82051 45.94754,13.93094 46.67095,12.06734 47.12358,8.28081 46.7615,6.50704 45.07098,7.46264 43.60319))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3293233 records from 1137 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008497-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rq57tw
title: Occurrence Download

description: A dataset containing 6044 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ambrosia salsola, Ambrosia salsola (Torr. & A.Gray) Strother & B.G.Baldwin, Ambrosia salsola, Ambrosia salsola (Torr. & A.Gray) Strother & B.G.Baldwin, Ambrosia salsola (Torr. & A.Gray) Strother & B.G.Baldwin, Ambrosia salsola (Torr. & A.Gray) Strother & B.G.Baldw., Ambrosia salsola (Torr. & A.Gray) Strother & B.G.Baldwin, 2002, Ambrosia salsola (Torr. & A. Gray) Strother & B. G. Baldwin, Ambrosia salsola (Torr. & A.Gray) Strother & B.G.Baldwin, Ambrosia salsola (Torr. & A.Gray) Strother & B.G.Baldwin, Ambrosia salsola (Torr. & A.Gray) Strother & B.G.Baldwin, 2002, Ambrosia salsola (Torrey & A. Gray) Strother & B. G. Baldwin, Ambrosia salsola (Torr. & A.Gray) Strother & B.G.Baldwin, Ambrosia salsola (Torr. & A.Gray ex Torr. & A.Gray) Strother & B.G.Baldwin, Cuscuta denticulata Engelm., Tetralicia salsolae von Ellenrieder & Gill 2024, Hymenoclea fasciculata A. Nelson, Hymenoclea pentalepis Rydb., 1922, Hymenoclea salsola Torr. & A.Gray ex Torr. & A.Gray, 1849, Hymenoclea pentalepis Rydb., Hymenoclea pentalepis Rydb., Hymenoclea salsola Torr. & A.Gray, Hymenoclea pentalepis Rydb., Hymenoclea pentalepis Rydb., Hymenoclea salsola Torr. & A. Gray, Hymenoclea fasciculata A.Nelson, Hymenoclea pentalepis Rydb., Hymenoclea fasciculata A.Nelson, Hymenoclea salsola Torr. & A.Gray, Hymenoclea pentalepis Rydb., Hymenoclea fasciculata A.Nelson, Hymenoclea salsola Torr. & A.Gray ex Torr. & A.Gray, Hymenoclea salsola Torr. & A.Gray, Hymenoclea salsola Torr. & A.Gray ex Torr. & A.Gray, Hymenoclea fasciculata A.Nelson)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6044 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017516-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.22e8zp
title: Occurrence Download

description: A dataset containing 926 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Melilotus siculus Vitman, Melilotus siculus Vitman, Melilotus siculus Vitman, Melilotus siculus (Turra) Steud., Melilotus siculus (Turra) B.D.Jacks., Melilotus siculus (Turra) Steud., Melilotus siculus (Turra) Steud., Melilotus siculus (Turra) B.D.Jackson, Melilotus siculus (Turra) B.D.Jacks., Melilotus siculus (Turra) Steud., Melilotus siculus (Turra) B.D.Jack., Melilotus siculus Steud., 1841, Melilotus siculus (Turra) B.D.Jacks., Melilotus siculus Vitman, 1790, Melilotus siculus (Turra) Steud., Melilotus siculus (Turra) B.D.Jacks., Melilotus siculus (Turra) B.D.Jackson, Melilotus siculus (Turra) Steud., Melilotus siculus (Turra) B.D. Jackson, Melilotus siculus (L.) B.D.Jacks., 1895, 161181994, Melilotus siculus (Turra) B. D. Jacks., Melilotus sicula (Turra) B.D.Jacks., Melilotus sicula (Turra) B.D.Jacks., Ensifer medicae Rome et al., 1996, Melilota messanensis (L.) Medik., Melilotus striatus Moench, Trifolium siculum Turra, Trifolium messanense L., Trifolium siculum Turra, Melilotus striatus Moench, Melilota messanensis (L.) Medik., Trigonella sicula (Turra) Coulot & Rabaute, Sertula messanensis (L.) Kuntze, Trifolium siculum Turra, Melilotus striatus Moench, Sertula messanensis (L.) Kuntze, Trifolium messanense Linnaeus 1771, Melilota messanensis (L.) Medik., Trifolium messanense L., Melilotus messanensis (L.) All., Trifolium messanense L., Melilotus messanensis (L.) All., Melilotus messanensis (L.) All., Melilotus messanensis (L.) All., Trigonella sicula (Turra) Coulot & Rabaute, Melilotus messanensis (L.) All., Melilota messanensis (L.) Medik., Sertula messanensis (L.) Kuntze, Trifolium siculum Turra, Trifolium messanense L., Trifolium siculum L., 1753, Trigonella sicula (Turra) Coulot & Rabaute, Melilotus messanensis (L.) All., Trigonella sicula (Turra) Coulot & Rabaute, Trifolium siculum Turra, Melilotus messanensis (L.) All., Sertula messanensis (L.) Kuntze, Melilotus striatus Moench, Melilotus messanensis (L.) All., Trifolium messanense L.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 926 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017517-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/t4ck8gp3jh.3
title: Up-to-date earthquake and focal mechanism solutions datasets for the assessment of seismic hazard in the vicinity of the United Arab Emirates

description: The first dataset is an updated Poissonian and unified earthquake catalog for the UAE spanning the time period from the year 658 to 2019. The second file includes focal mechanism solutions data for the surrounding of the United Arab Emirates, for the time 1923 to 2015.
DOI: 10.17632/9gvrgmz58n.2
title: Water quality data from the Cesar River, Colombia

description: The water quality data of the Cesar River for this study are constituted by historical information recorded between 2004 and 2020. The first group of data comes from official sources (stations 1-6) and corresponds to physicochemical parameters measured by the Institute of Hydrology, Meteorology, and Environmental Studies (IDEAM). The second group (PM 7-30) corresponds to grey literature from documents of water resource management plans, watershed management, public services, and scientific research that describe the water quality conditions of the river (Nuñez & Reyes, 2012; Gutierrez et al., 2014; Madera et al., 2016). 
The structure of the database was designed under a hierarchical metadata system with a relational schema (RDBMS) which is normalized to the 3NF form, that is, in addition to being of the 2NF form, there is no transitive dependence between the attributes that are not key. The database obeys nine relational tables describing the type, primary attribute, and derived or secondary information. Raw data are included with information on physicochemical parameters, location, municipalities, surface current, region and hydro region, years reported and the source of the information, organized hierarchically. The metadata was created on the PostgreSQL platform and visualized in the QGIS environment. Also, for the queries of prop data, an open-source code was developed that encodes the meta-of the parameters or stations of interest.
DOI: 10.5066/p9dgg75w
title: Half-meter topobathymetric elevation model and elevation-area-volume tables for Great Salt Lake, Utah, 2002-2016

description: This topobathymetric elevation dataset of Great Salt Lake includes an assimilated topobathymetric�raster comprising interpolated bathymetry from 2005 and 2006 (Baskin, 2005; Baskin, 2006) and QL1 and QL2 lidar from 2016 (Utah Geospatial Resource Center, 2016). The bathymetric dataset was originally published as contour maps. The contours were interpolated to develop a digital elevation model that is readable by a geographic information system and compatible with topographic lidar data generated in 2016. Because the water elevation of Great Salt Lake has declined since 2005, regions of the bathymetric and lidar datasets overlap to provide a reasonable estimate of error. The topobathymetric dataset was generated with a horizontal projection of UTM Zone 12N, North American Datum of 1983, Geoid 12b at a 0.5-meter horizontal resolution, and referenced to the North American Vertical Datum of 1988 in meters. This dataset also provides elevation-area-volume relationships for Great Salt Lake derived from the topobathymetric dataset. The topobathymetric dataset was resampled from 0.5-meter to 5.0-meter resolution due to the size of the topobathymetric dataset and computation constraints. An error analysis was conducted at 0.01-ft elevation increments across three elevation bands: lower (4,175.00?4,176.00 ft above NAVD 88), middle (4,200.00?4,201.00 ft above NAVD 88), and upper (4,215.00?4,216.00 ft above NAVD 88).
DOI: 10.5281/zenodo.10076902
title: Understanding the Impact of CaCl2-induced Chemical Pressure on the Phase Transition of H2O at High Pressure
DOI: 10.5281/zenodo.10894317
title: Open Data Package: Lessons Learned from Developing a Sustainability Awareness Framework for Software Engineering Using Design Science.

description: Open Data Package for the paper: Stefanie Betz, Birgit Penzenstadler, Leticia Duboc, Ruzanna Chitchyan, Sedef Akinli Kocak, Ian Brooks, Shola Oyedeji, Jari Porras, Norbert Seyff, and Colin C. Venters. 2024. Lessons Learned from Developing a Sustainability Awareness Framework for Software Engineering Using Design Science. ACM Trans. Softw. Eng. Methodol. 24 00, JA, Article 00 (March 2024), 39 pages. https://doi.org/10.1145/3649597 25
DOI: 10.5281/zenodo.1476236
title: EukZoo, an aquatic protistan protein database for meta-omics studies.

description: This database contain protein sequences of aquatic microbial eukaryotes, or protists. The purpose of this is to make a database that is of reasonable quality to serve as resource for both taxonomy and functional interpretation of metagenomic and metatranscriptomic studies of protists. The source of the sequences were mainly from Marine Microbial Eukaryotes Transcriptome Sequencing Project (MMETSP), and supplemented with various genomes and transcriptomes of organisms that were not a part of MMETSP.

To use this database, one has to understand the main function of the three files here.

(1) The protein sequences are stored in .faa file. You can build an alignment/search database out of that and search your meta-omics sequences against it. Each sequence in the FASTA file has an ID which always consists of two parts like this: "MMETSP0004_1234567". The text before the first underscore is the source ID of that sequence.

(2) Taxonomy information of each source ID are stored in "EukZoo_taxonomy_table_v_0.2.tsv". One can use the information within in conjunction with database search results to assign taxonomy to sequences.

(3) KEGG annotation of each sequence are stored in "EukZoo_KEGG_annotation_v_0.2.tsv". One can use the information within in conjunction with database search results to assign KEGG functional annotation (KO ID) to sequences.

I also provide scripts to assign taxonomy and KEGG annotation from database search results. You can also find the scripts and explanations on how to use them on the EukZoo GitHub page. You will find details on how the database was created and curated on there as well.

Please contact me at zhenfeng.liu1@gmail.com if you have any questions or requests. Thank you for your interest in EukZoo.
DOI: 10.5281/zenodo.8192741
title: Proof-of-concept AO telemetry data using the AOT standard format

description: Dataset containing a demonstration of AO telemetry data using the AOT standard format. Contains data from 5 different systems (CIAO, ERIS, GALACSI, NAOMI and PAPYRUS). The data is as follows: 4 CIAO files "CIAO#_*.fits" where # indicates the AT where the data was produced. 2 ERIS files, one in LGS (LTAO) mode and another in NGS (SCAO) mode. 1 GALACSI file. 4 NAOMI files "NAOMI#_*.fits" where # indicates the AT where the data was produced. 2 PAPYRUS files, one using a Shack-Hartmann wavefront sensor (SHWFS) and another using a Pyramid wavefront sensor (PWFS). GALACSI, CIAO, NAOMI and ERIS data were gathered under ESO's program IDs 60.A-9278(B), 60.A-9278(C), 60.A-9278(D) and 60.A-9278(E) respectively. The data was translated via the functions provided in the Python package <em>aotpy</em> (10.5281/zenodo.8187230). This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 101004719 (OPTICON–RadioNet Pilot).
DOI: 10.6084/m9.figshare.27230865
title: Supplementary Material for: Genetically predicted the immune cell-mediated effect of lipid metabolism on allergic diseases: a two-step, mediation Mendelian randomization study

description: Background: An increasing number of studies have demonstrated that dynamic changes in lipid species can affect allergic diseases; however, the causal relationship and mediating role of immune cells remain unclear.
Methods: We conducted a bidirectional two-sample Mendelian randomization (MR) analysis using genome-wide association study (GWAS) data on 179 lipid species (n = 7,174) and three types of allergic diseases including allergic rhinitis (AR) (n = 370,158), allergic asthma (n = 219,753), and allergic conjunctivitis (n = 377,277). The principal model used was the inverse variance weighted (IVW) approach, and a series of sensitivity analyses were conducted to ensure the robustness of the results. We used a two-step MR approach to assess whether the causal effect was mediated by immune cells (n = 3,757).
Results: Sterol ester and sphingomyelin played pathogenic roles in allergic asthma, AR, and allergic conjunctivitis; however, the effective subtypes differed. Among them, CD45RA− CD4+ mature T cells and CCR2 on CD14+ CD16+ monocytes affected the promoting impact of sterol ester’s metabolism on allergic asthma and AR with different mediating proportions, while the role of sphingomyelin may not involve the immune cells. Moreover, we observed that HLA-DR on CD33− HLA DR+ myeloid cells, CD11b on CD66b++ myeloid cells, and IgD+ CD38− B cells played the most mediating effect of phosphatidylethanolamine (O−18:2_20:4) in allergic asthma, phosphatidylinositol (16:0_18:1) in AR, and phosphatidylethanolamine (18:0_18:2) in allergic conjunctivitis.
Conclusions: This MR study provides evidence for specific lipid species associated with the risk of allergic diseases, especially sterol esters, and identifies the immune cells that mediate this causal relationship.
DOI: 10.6084/m9.figshare.27255057
title: Supplementary Material for: Conjunctival phlyctenule and nodular scleritis in a patient with previous Herpes Simplex Virus-2 exposure —Causative Agent or Innocent Bystander?

description: Introduction: Phlyctenular keratoconjunctivitis is an inflammatory condition arising from a type IV hypersensitivity reaction, presenting with inflamed nodules on the conjunctiva and cornea. Scleritis is a severe ocular inflammation linked to systemic diseases, potentially vision-threatening, and involving immune responses similar to Phlyctenular keratoconjunctivitis. This case report discusses a patient with a history of HSV-2 infection who primarily developed phlyctenular conjunctivitis and later progressed to nodular scleritis.
Case Presentation: A 66-year-old female presented with pain, redness, and a foreign body sensation in her left eye for two days. Initial treatment for epidemic keratoconjunctivitis with tobramycin-dexamethasone improved her symptoms. However, three weeks later, she developed a conjunctival phlyctenule. Diagnostic tests, including blood work and conjunctival swabs, were conducted. While most tests were negative, HSV-2 IgG was positive. The patient failed topical corticosteroid monotherapy; however, she responded to oral valacyclovir. Follow-up examinations showed significant improvement, with resolution of the conjunctival phlyctenule and nodular scleritis, and her best-corrected visual acuity returned to 20/20.
Conclusion: This case highlights the importance of considering HSV-2 in atypical presentations of phlyctenular conjunctivitis and scleritis. The patient's response to antiviral therapy underscores the potential role of HSV-2 in such ocular inflammations. Thorough infectious workups and alternative treatment approaches are crucial in managing unconventional cases. Experimental treatments based on lab findings can be valuable for patients preferring conservative management, emphasizing the need for close follow-up and personalized care in ocular inflammatory diseases.
DOI: 10.6084/m9.figshare.27261795
title: Supplementary Material for: Neuromodulations in Psychiatric Disorders: Emerging Lines of Definition

description: Medicine
DOI: 10.6084/m9.figshare.27264324
title: Supplementary Material for: Postnatal outcomes of fetal variants of unknown significance in prenatal CMA: A single-center study

description: Introduction:Chromosome microarray analysis(CMA) can identify clinically significant microdeletions and microduplications, providing valuable insights into the genetic basis of various disorders. Our study was to evaluate clinical management and prognosis of fetuses with prenatal variants of unknown significance (VOUS) and determine diagnostic approaches for subsequent pregnancies.
Methods: This study included 2,953 fetuses undergoing chromosome microarray analysis (CMA) at the Prenatal Diagnostic Center of Changzhou Maternal and Child Health Care Hospital from January 2018 to December 2022, identifying 162 cases with VOUS. Parent-of-origin testing determined the origin of copy number variations (CNVs). Prenatal genetic counseling was provided, and outcomes were followed for 3-36 months post-birth.
Results: All 162 VOUS cases received prenatal genetic counseling. Among these, 123 continued the pregnancy; 22 chose termination, and 17 were lost to follow-up. Of the continuations, 116 delivered at term, and 7 preterm. Post-birth follow-up showed 5/123 live-born fetuses developed relevant clinical phenotypes. Parent-of-origin testing in 21 cases identified 18 hereditary and 3 de novo variants. Additionally, five subsequent pregnancies were monitored, with two undergoing amniocentesis and three receiving low-risk non-invasive prenatal testing (NIPT), all with positive outcomes.
Conclusion: VOUS, occurring in approximately 5% of cases, require comprehensive prenatal genetic counseling and show generally favorable outcomes. Despite low association with adverse clinical phenotypes, the importance of postnatal follow-up and regular report updates is emphasized to detect potential clinical associations early.
DOI: 10.6084/m9.figshare.27677466
title: Supplementary Material for: Forecasting the Worldwide Impact of Stroke for individuals aged 45 and above

description: Background:We aimed to assess the global impact of stroke in people aged 45 years and older between 1990 and 2030, focusing on morbidity, mortality and disability-adjusted life years (DALYs).
Methods:Generalized additive models (GAM) were used to project disease burden from 2020 to 2030. Additionally, the association between sociodemographic index (SDI) and stroke burden was investigated, and regional differences were assessed by Mann U test-Whitney.
Results:The overall age-standardized stroke incidence rate (ASIR) among adults aged 45 years and older is projected to increase from 2020 to 2030, with an estimated annual percentage change (EAPC) of 1.29. Conversely, the age-standardized death rate (ASDR) in EAPC is expected to decrease by -1.48, and the age-standardized DALY in EAPC is expected to decrease by -1.66. By 2030, men are expected to have higher ASIR (181.81) and ASDR (87.31) than women (ASIR: 151.85, ASDR: 65.20). Regional differences are large. East Asia is expected to have the highest ASIR in 2030 (265.55). Age estimates show that older age groups, particularly those aged 75 to 79, are at higher risk of stroke. In addition, there is a significant inverse relationship between SDI and stroke severity, with areas with higher SDI tending to have lower morbidity, mortality, and DALYs. 
Conclusion: From 1990 to 2030, ASIR is expected to upgrade, especially in East Asia and regions with lower SDI. Men will bear a greater burden than women.