cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/r5rs8m34z4.3
title: A systematic review and meta-analysis

description: In-depth literature search spanning from 1975 to 2023 to cover different production diseases in dairy cattle. Physiological systems evaluated: reproductive, mammary,
metabolic, integumentary, immune, musculoskeletal, digestive, and respiratory. Original research in the English language. 
The searches specifically targeted documents published in peer-reviewed journals and written in English. The search process yielded a total of 3,349 records. These records underwent a two-stage filtering process, initially screening the titles and abstracts. From this initial screening, 505 articles were deemed relevant and were then imported into SAS 9.4, where additional analysis was conducted using SAS integrated with Python and the NLTK (Natural Language Toolkit) library for basic full-text analysis. 
The rigorous search and filtering process ensured that a comprehensive and representative set of articles was included in the study, providing a robust foundation for the meta-analysis and systematic review of the identified traits related to production diseases in dairy cows. The studies included in the data extraction process met specific criteria for inclusion.
DOI: 10.17632/n7nfwptybf.1
title: Drivers of PM2.5 episodes and exceedance in India: A synthesis from the COALESCE network

description: Details about the dataset is provided in the manuscript "Drivers of PM-2.5 episodes and exceedance in India: A synthesis from the COALESCE network" published in JGR: Atmospheres
DOI: 10.17632/n7nfwptybf.3
title: Drivers of PM2.5 episodes and exceedance in India: A synthesis from the COALESCE network

description: Details about the dataset is provided in the manuscript "Drivers of PM2.5 episodes and exceedance in India: A synthesis from the COALESCE network" published in JGR: Atmospheres
DOI: 10.17632/5tj4kymggt.1
title: Residual Complex I activity and amphidirectional Complex II operation support glutamate catabolism through mtSLP in anoxia

description: Anoxia halts oxidative phosphorylation (OXPHOS) causing an accumulation of reduced compounds in the mitochondrial matrix which impedes dehydrogenases. By simultaneously measuring oxygen concentration, NADH autofluorescence, mitochondrial membrane potential and ubiquinone reduction extent in isolated mitochondria in real-time, we demonstrate that Complex I utilized endogenous quinones to oxidize NADH under acute anoxia. 13C metabolic tracing or untargeted analysis of metabolites extracted during anoxia in the presence or absence of site-specific inhibitors of the electron transfer system showed that NAD+ regenerated by Complex I is reduced by the 2-oxoglutarate dehydrogenase Complex yielding succinyl-CoA supporting mitochondrial substrate-level phosphorylation (mtSLP), releasing succinate. Complex II operated amphidirectionally during the anoxic event, providing quinones to Complex I and reducing fumarate to succinate. Our results highlight the importance of quinone provision to Complex I oxidizing NADH maintaining glutamate catabolism and mtSLP in the absence of OXPHOS.
DOI: 10.17632/6k5gmhwvd5.1
title: Mitopore mtDNA integrity analysis data

description: This dataset comprises samples used in testing and benchmarking Mitopore.de, a user-friendly, comprehensive web server-based software to analyze the integrity of mitochondrial DNA (mtDNA) derived from short- and long-read sequencing. It contains four folders (iPSCs, NGS, patient-derived and control samples, semi-synthetic indel data) with basecalled data derived from Oxford Nanopore Technologies (ONT) and Illumina next generation sequencing (NGS) in FASTQ format:
- iPSCs: ONT mtDNA sequencing data (Flongle flow cell) from commercially available and in-house genome-edited induced pluripotent stem cells (iPSCs).
- NGS: Illumina NGS (MiSeq) data for samples with known heteroplasmy levels to benchmark the approach for ONT sequencing.
- patient-derived and control samples: ONT sequencing data (Flongle flow cell) for samples derived from patients harboring mtDNA mutations
- semi-synthetic indel data: Artificially introduced indel mutations into a real ONT sequencing-derived FASTQ dataset (Flongle flow cell) to benchmark Mitopore.de for mtDNA indel detection.
DOI: 10.17632/6k5gmhwvd5.2
title: Mitopore mtDNA integrity analysis data

description: This dataset comprises samples used in testing and benchmarking Mitopore.de, a user-friendly, comprehensive web server-based software to analyze the integrity of mitochondrial DNA (mtDNA) derived from short- and long-read sequencing. It contains five folders (iPSCs, WGS, NGS, patient-derived and control samples, semi-synthetic indel data) with basecalled data derived from Oxford Nanopore Technologies (ONT), Pacbio (PACBIO), and Illumina next generation sequencing (NGS) in FASTQ format:
- iPSCs: ONT mtDNA sequencing data (Flongle flow cell) from commercially available and in-house genome-edited induced pluripotent stem cells (iPSCs).
WGS: FASTQ files of Whole genome sequencing-derived data (ONT_WGS, ILLUMINA_WGS, PACBIO_WGS) on the KOLF2.1J line to analyze with the appropriate read aligner using www.Mitopore.de; used to compare the Mitopore approach with other sequencing technologies. It also contains a sample prepared with the Mitopore workflow (MITOPORE_APPROACH).
- NGS: Illumina NGS (MiSeq) data for samples with known heteroplasmy levels to benchmark the approach for ONT sequencing.
- patient-derived and control samples: ONT sequencing data (Flongle flow cell) for samples derived from patients harboring mtDNA mutations
- semi-synthetic indel data: Artificially introduced indel mutations into a real ONT sequencing-derived FASTQ dataset (Flongle flow cell) to benchmark Mitopore.de for mtDNA indel detection.
DOI: 10.17632/b93rpjbz3w.1
title: Busova et al., Pazyryk ZooMS Identifications

description: ZooMS Data
DOI: 10.5281/zenodo.10548430
title: Clinical practice guidelines on the management of status epilepticus in adults: a systematic review - AGREE assessment

description: We conducted a systematic review of clinical practice guidelines on the management of satus epilepticus in adults, assessing their quality, outlining commonalities and discrepancies in recommendations, highlighting research gaps.

Here are reported the data of the quality assessment. Three researchers independently assessed the quality of the CPGs using the AGREE II tool, which covers 23 items in the domains of “Scope and Purpose”, “Stakeholder Involvement”, “Rigour of Development”, “Clarity of Presentation”, “Applicability”, “Editorial Independence”. Each item was scored on a 7-point Likert-type scale from 1 (strongly disagree) to 7 (strongly agree). A final quality score for each domain was calculated according to the AGREE II user’s manual, and provided on a percentage scale.
DOI: 10.5281/zenodo.10548431
title: Clinical practice guidelines on the management of status epilepticus in adults: a systematic review - AGREE assessment

description: We conducted a systematic review of clinical practice guidelines on the management of satus epilepticus in adults, assessing their quality, outlining commonalities and discrepancies in recommendations, highlighting research gaps.

Here are reported the data of the quality assessment. Three researchers independently assessed the quality of the CPGs using the AGREE II tool, which covers 23 items in the domains of “Scope and Purpose”, “Stakeholder Involvement”, “Rigour of Development”, “Clarity of Presentation”, “Applicability”, “Editorial Independence”. Each item was scored on a 7-point Likert-type scale from 1 (strongly disagree) to 7 (strongly agree). A final quality score for each domain was calculated according to the AGREE II user’s manual, and provided on a percentage scale.
DOI: 10.17632/fkczypktm2.1
title: CO2 Emission

description: Steel and Composite Structural optimization reducing CO2 Emission
DOI: 10.17632/6c9bh5d4gg.1
title: WSKE4PUF protocol HLPSL file

description: This file contains a formal description of WKSE4PUF protocol for formal verification with AVISPA.
DOI: 10.17632/d873k97688.1
title: MONOGRAFIYA

description: This is monography
DOI: 10.17632/45r59x4p6v.1
title: X-ray fluorescence CUSN8ZN4PB1 - Sample 01

description: X-ray fluorescence CUSN8ZN4PB1 - Sample 01
DOI: 10.17632/hjj8nm2tpb.1
title: HFP Study Data

description: Data Related to Analysis of Processed Natural Gas Injection on Hydrate Formation in High Pressure Refrigerated Condensate Lines
DOI: 10.17632/78mw556vjc.1
title: Fall Risk Assessment Dataset: Older-Adult Participants undergoing the Time Up and Go Test

description: The dataset comprises signal data collected from IMU sensors during the administration of the Time Up and Go (TUG) test for assessing fall risk in older adults. The dataset is divided into two main sections. The first section contains personal, behavioral, and health-related data from 34 participants. The second section contains signal data from tri-axial acceleration and tri-axial gyroscope sensors embedded in an IMU sensor, which was affixed to the participants' waist area to capture signal data while they walked. The chosen assessment method for fall risk analysis is the TUG test, requiring participants to walk a 3-meter distance back and forth. To prepare the dataset for subsequent analysis, the raw signal data underwent processing to extract only the walking periods during the TUG test. Additionally, a low-pass filter technique was employed to reduce noise interference. This dataset holds the potential for the development of effective models for fall risk detection based on insights garnered from questionnaires administered to specialists who observed the experiments. The dataset also contains deanonymized participant information that can be explored to investigate fall risk, along with other health-related conditions or behaviors that could influence the risk of falling. This information is invaluable for devising tailored treatment or rehabilitation plans for individual older adults.
DOI: 10.17632/zgr3htjy64.1
title: The adsorption of carbon and nitrogen oxides on the PuO2 {110} surface: a DFT + U study

description: Input files for VASP simulations (INCAR) and output structures (CONTCAR)
DOI: 10.17632/jzxsj7kr7m.1
title: PTMS and long-term outcomes of liver recipients

description: Metabolic disorders, cardiovascular diseases, and cancers constitute an important source of morbidity and mortality of liver recipients. This study aimed to investigate the impact of post-transplant metabolic syndrome (MS) present 1 year after liver transplantation on survival rates, risk of major cardiovascular events (CVEs), and de novo malignancies.
DOI: 10.17632/dn29dxfggv.1
title: Preventive releases of phytoseiid and anthocorid predators provided with supplemental food successfully control Scirtothrips in strawberry

description: Thrips of the subtropical genus Scirtothrips are emerging as important pests in several crops. Scirtothrips dorsalis has been increasingly invading new areas outside of its native region of South and East Asia causing economic damage to several crops. Scirtothrips inermis is another polyphagous species with worldwide distribution. Both species are polyphagous, and in recent years have emerged as key pests in strawberry. In this study, we first evaluated the predation and oviposition rate of commercially available phytoseiid predatory mites Amblyseius swirskii, Amblydromalus limonicus, Transeius montdorensis, and Neoseiulus cucumeris on larval stages of both Scirtothrips species, and oviposition rates of predatory mites on the supplementary food source Artemia franciscana cysts were also assessed. Predatory mites equally accepted both thrips species as prey and showed stable oviposition rates on these diets. Amblyseius swirskii and A. limonicus were the most voracious, also exhibiting the highest oviposition rate of the predators tested. We further evaluated the biological control potential of predatory mites and anthocorid predators Orius laevigatus and Orius limbatus in a greenhouse experiment. Predators were released preventively and supported with Artemia cysts before the introduction of S. inermis . Both Orius predators achieved good control of the pest, with O. limbatus developing higher numbers than O. laevigatus . Regarding phytoseiids, A. swirskii and A. limonicus both controlled the pest and built higher populations than T. montdorensis and N. cucumeris . Our results show that a preventive strategy based on phytoseiid or anthocorid predators in strawberry can be effective in suppressing S. inermis .
DOI: 10.17632/swkpw7tp57.1
title: Efficient Arabinoxylan Assay for Wheat: Exploring Variability and Molecular Marker Associations in Wholemeal and Refined Flour - AX values and molecular marker results

description: Here are reported the phenotypic and genotypic values of the research study entitled: Efficient Arabinoxylan Assay for Wheat: Exploring Variability and Molecular Marker Associations in Wholemeal and Refined Flour.
DOI: 10.17632/n379ytvrmv.1
title: Baseline eosinophil level may be a predictive indicator for the effectiveness of Dupilumab in patients with prurigo nodularis

description: Supplementary file
DOI: 10.17632/y4hh6s84g2.1
title: Aged practitioners of orienteering and hiking as a model of healthy aging: physical fitness and quality of life from a randomized clinical trial

description: Methods: Physical and sports activities in nature have proven to be highly relevant for aged practitioners as they promote vigor, vitality, and well-being. A randomized controlled trial (RCT) compared the effects between orienteering and hiking modalities, with n=96 participants allocated to three groups: the orienteering group (OG), hiking group (HG), and control group (CG). Tests administered included hand grip strength, chair stand, 6 min walk, chair sit-&-reach, and balance. Systemic blood pressure parameters and resting heart rate were monitored in the pre-test and post-test. Differences were analyzed using Generalized Estimating Equations (GEE), and effect size (ES) was calculated. Unpaired and paired tests were employed to assess baseline and post-intervention differences after 24 weeks. Results: This RCT highlights the effects of the interaction between groups and time. The main differences were found in the balance in which the OG, reduced -6.23 seconds, with a variation of 29.9% (ES=0.83), while the HG it to -2.12 seconds (ES=0.49), with a variation of 9.9%. Changes in systolic blood pressure (p=0,014) and diastolic blood pressure (p&lt;0.001) parameters were also notable in the OG. Both groups showed a significant intervention effect (p&lt;0.001) compared to the control group, with a large effect size (≥8.0). The quality of life of the intervention groups significantly improved (p&lt;0.001) compared to the control group (p=0.571). Conclusion: Both modalities showed the intervention effect on physical fitness and quality of life, with orienteering demonstrating a greater impact on balance and blood pressure control.
DOI: 10.17632/4y8tpkftj5.1
title: state support, patriotism and taxpaying intentions

description: survey data and SPSS Data for the study
DOI: 10.17632/p8smdph2b4.1
title: X-ray fluorescence CUSN8ZN4PB1 - Sample 02

description: X-ray fluorescence CUSN8ZN4PB1 - Sample 02
DOI: 10.17632/nwxsg44g8h.1
title: Data for Petach and Wyant (2024)

description: Data and code for Petach and Wyant (2024)
DOI: 10.17632/wv395rgs77.1
title: Supplemental Material

description: Questions and Answers from ACMS, ChatGPT, GoogleBard
DOI: 10.17632/5jcn376p2d.1
title: Salinity

description: Input Data, Model and Output Results
DOI: 10.17632/9hzjb2bypn.1
title: Implications for Interventions: Isolation

description: Purpose:

Simulates the progression of isolation over time, incorporating various aspects and potential intervention strategies.
Explores the interplay of isolation factors and the potential impact of interventions.
Serves as a foundation for further refinement and validation using real-world data.

Key Components:

Time:
Covers 10 simulated time units, divided into 1000 equally spaced time points.
Isolation Components:
Withdrawal: Represented by a sine wave function, suggesting cyclical patterns.
Rejection: Modeled by a negative cosine wave function, implying potential oscillations.
Depression: Simulated by an exponentially decaying function, indicating a gradual decrease over time.
Anxiety: Represented by a sine wave function with double the frequency, suggesting more rapid changes.
Interventions:
Early Intervention: Aims to reduce withdrawal's impact by halving its values above a threshold.
Coping Mechanisms: Placeholder function (to be refined), suggesting potential mitigation of depression symptoms.
Model:

isolation_model function combines isolation components at each time point to produce an overall isolation level.
Integrates interventions by modifying withdrawal and depression values based on their respective strategies.

Visualisation:

Code generates a plot of isolation levels over time, allowing for visual analysis of trends and intervention effects.
Important Considerations:

The dataset is simulated, not based on real-world measurements. Functions for isolation components and interventions are simplified representations.

Next Steps:

Refine intervention models with more realistic representations.
Validate results with empirical data to assess model accuracy.
Incorporate additional factors (social support, personality traits).
Simulate isolation over longer time periods to observe long-term trends.
Address potential limitations in model assumptions and function choices.
DOI: 10.17632/smrknsnbsp.1
title: BAS chromatin remodeler mediates controls brassinosteroid-induced transcriptional activation and plant growth in Arabidopsis (Western blot)

description: Brassinosteroid (BR) signaling leads to the nuclear accumulation of the BRASSINAZOLE-RESISTANT 1 (BZR1) transcription factor, which plays dual roles in activating or repressing the expression of thousands of genes. BZR1 represses gene expression by recruiting histone deacetylases, but how it activates transcription of BR-induced genes remains unclear elusive. Here, we show that BR reshapes genome-wide chromatin accessibility landscape, increasing the accessibility of BR-induced genes, and reducing the accessibility of BR-repressed genes in Arabidopsis. BZR1 physically interacts with BRAHMA (BRM), the ATPase subunit of BRAHMA-Associated SWI/SNF (BAS) chromatin-remodeling complex, on the genome and selectively recruits the BAS complex to BR-activated genes. Depletion of BAS abrogates the capacities of BZR1 to increase chromatin accessibility, activate gene expression, and promote cell elongation, without affecting BZR1’s ability to reduce chromatin accessibility and expression of BR-repressed genes. Together, these data identify reveal that BZR1 recruits the BAS complex to open chromatin and to mediate BR-induced transcriptional activation of growth-promoting genes.
DOI: 10.17632/8xjwmfbchr.1
title: Replication US files for "A proposal for constructing and evaluating core inflation measures" LAJCB 2023 #100094

description: This package contains instructions, MATLAB codes, data and results for "A proposal for constructing and evaluating core inflation measures". With it you can replicate core inflation results for the U.S. 
The source of detailed inflation data is the U.S. Bureau of Labor Statistics.
DOI: 10.17632/2r2scm54sn.1
title: Data for: CAG repeat expansions create splicing acceptor sites and produce aberrant repeat-containing RNAs, Anderson et al.

description: Raw representative western blot images and fluorescent micrographs for the manuscript "CAG repeat expansions create splicing acceptor sites and produce aberrant repeat-containing RNAs", in press at Molecular Cell.
DOI: 10.17632/2sm93h8t7y.1
title: DATASET FOR PERFORMANCE OF SUPERIOR DAIRY CATTLE SIRES

description: This study's object includes animal identity data, pedigree data, and milk production performance records for Holstein Friesian dairy cows born between 2017-2021. This study's parameters included milk yield, length of lactation, peak production, and dry length period. Another factor to consider is the environmental state. High air temperatures have a negative impact on dairy cow welfare and production across Europe, especially tropical regions. This causes severe cattle losses. Humidity, air velocity, and insolation all have a major impact on animal thermoregulation. Special indices are employed to measure the overall impact of various environmental conditions on animals. The temperature-humidity index (THI) is commonly used to assess how ambient temperature and relative humidity affect animals. Genetic advancement on selection indicators in dairy farming by 90-95% depends on the amount of breeding value of bull breeders. Realizing how breeding value (BV) is passed down across generations is crucial for selecting the right pairs and advancing the breed. Accurate and detailed forecasts help farmers decrease economic risks when selecting genetic material. Estimation of breeding value uses the BLUP method since this method is the most accurate estimated breeding value of sire compared to other methods The production performance of FH dairy cattle is included in the good category. For 1st lactation, which has an average milk production of 8,029.28 ± 1,112 kg; length of lactation 321.26 ± 38.48 days; peak production on day 85.36 ± 29.25 with milk production of 32.55 ± 4.16 kg; and the dry length period was 51.37 ± 9.33 days. Lactation 2 milk production 7,761.66 ± 1,145 kg; length of lactation 323.66 ± 43.06 days; peak production on day 58.43 ± 21.11 with milk production 40.79 ± 5.30 kg; and dry length period was 65.10 ± 22.69 days. Lactation 3 milk production 7,788.92 ± 1,148 kg; length of lactation 326.64 ± 46.74 days; peak production on day 61.88 ± 22.72 with milk production 43.62 ± 5.11 kg; and the dry length period was 65.00 ± 20.49 days. Lactation 4 milk production was 7,484.18 ± 1,133 kg, lactation length was 323.04 ± 42.23 days, peak production was on day 66.39 ± 24.26, milk production was 43.82 ± 5.68, and the dry length period was 65.78 ± 21.60 days. The heritability value of FH cow milk production namely 0.03 ± 0.02, is included in the low category. Differences in heritability values is due to differences in the type of data and statistical analysis used. Low heritability estimates indicated that the differences in the performance traits of Holstein cows were due to different nutritional, climatic conditions, and management practices prevalent over different times. Ranking of 10 sire’s that have the genetic potential of their offspring based on their estimated breeding value, namely O.S. Elmer-XA, M.Z. Merlin-XA, L. Muscadet-XA, C.Toyjet, S. Gypsy B, WestCoastPldge, M.Z. Merlin-ET, Brasilia, L.JetBowser-XA, and MRMUDD-XA.