cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.yxx4au
title: Occurrence Download

description: A dataset containing 425 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Quercus laurina Bonpl.",
 "HasCoordinate is true",
 "Country is Mexico"
 ]
}

 The dataset includes 425 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000120-150203161911502/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mzdndq
title: Occurrence Download

description: A dataset containing 3726 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is MEX.25.2_2",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 3726 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059565-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1awxkf
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-163.31836 13.06878,-151.08398 13.06878,-151.08398 25.89481,-163.31836 25.89481,-163.31836 13.06878))",
 "HasCoordinate is true",
 "TaxonKey is Calophyllum inophyllum L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000756-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dhf772
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Thalassoma amblycephalum)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188012-230224095556074/datasets/export for details.
DOI: 10.15468/dl.bqvlvf
title: Occurrence Download

description: A dataset containing 25140 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nyctidromus albicollis (J.F.Gmelin, 1789)"
 ]
}

 The dataset includes 25140 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000120-150210113312293/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8hurtk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Cirripectes stigmaticus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188048-230224095556074/datasets/export for details.
DOI: 10.15468/dl.rt3dzt
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Xanthosoma taioba E.G.Gonç.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000756-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xev1nd
title: Occurrence Download

description: A dataset containing 22123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Country is Luxembourg",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 22123 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000120-150215220751508/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bdxsyt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Abudefduf sexfasciatus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188027-230224095556074/datasets/export for details.
DOI: 10.15468/dl.xfm4oy
title: Occurrence Download

description: A dataset containing 49102 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophrys apifera Huds."
 ]
}

 The dataset includes 49102 records from 283 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000756-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7njds5
title: Occurrence Download

description: A dataset containing 664 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platymiscium pinnatum (Jacq.) Dugand"
 ]
}

 The dataset includes 664 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000120-150221044754056/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xfhv6d
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amblyomma lepidum Dönitz, 1909",
 "Year 1960-2023"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013326-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jnnhzg
title: Occurrence Download

description: A dataset containing 27079 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Zealand",
 {
 "or" : [
 "DatasetKey is NZ National Vegetation Survey occurrence data",
 "DatasetKey is New Zealand Virtual Herbarium",
 "DatasetKey is iNaturalist Research-grade Observations"
 ]
 },
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Elaeocarpus L.",
 "TaxonKey is Aristotelia L'Hér."
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 27079 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000756-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yyhykm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Turbo jourdani)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188047-230224095556074/datasets/export for details.
DOI: 10.15468/dl.6xvo0h
title: Occurrence Download

description: A dataset containing 5291 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Inventario de Flora y Vegetación del Municipio de Enguídanos (Cuenca), 2010. Asociación de Desarrollo Integral de la Manchuela Conquense (ADIMAN)"
 ]
}

 The dataset includes 5291 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000120-150304104939900/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.39y3vg
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brissus obesus Verrill, 1867"
 ]
}

 The dataset includes 82 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132766-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.argx4r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Plagiotremus rhinorhynchos)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188067-230224095556074/datasets/export for details.
DOI: 10.15468/dl.touh82
title: Occurrence Download

description: A dataset containing 626 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Smilisca sila Duellman & Trueb, 1966"
 ]
}

 The dataset includes 626 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000120-150306150734599/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qgbdm8
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astragalus pseudorigidulus Podlech"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035852-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6gywq
title: Occurrence Download

description: A dataset containing 18179 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callipepla squamata (Vigors, 1830)"
 ]
}

 The dataset includes 18179 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000120-150311145101897/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zhmrjl
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xanthostemon confertiflorus Merr."
 ]
}

 The dataset includes 27 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000756-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10967263
title: Github Repository for: European green crab predation in a Washington State estuary revealed with DNA metabarcoding

description: Fisher, MC, Grason, EW, Stote, A, Kelly, RP, Litle, K, & PS McDonald. (2024). Invasive European green crab (Carcinus maenas) predation in a Washington State estuary revealed with DNA metabarcoding. DOI:10.1371/journal.pone.0302518

Github release v1.1 of the repository for Fisher et al. 2024, "European green crab predation in a Washington State estuary revealed with DNA metabarcoding." For the most updated repository, see: github.com/mfisher5/Green-crab-dDNA

Contains the code and minimum dataset necessary to replicate study findings.

 

---

Abstract: Predation by invasive species can threaten local ecosystems and economies. The European green crab (Carcinus maenas), one of the most widespread marine invasive species, is an effective predator associated with clam and crab population declines outside of its native range. In the U.S. Pacific Northwest, green crab has recently increased in abundance and expanded its distribution, generating concern for estuarine ecosystems and associated aquaculture production. However, regionally-specific information on the trophic impacts of invasive green crab is very limited. We compared the stomach contents of green crabs collected on shellfish aquaculture beds versus natural intertidal sloughs in Willapa Bay, Washington, to provide the first in-depth description of European green crab diet at a particularly crucial time for regional management. We first identified putative prey items using DNA metabarcoding of stomach content samples. We compared diet composition across sites using prey presence/absence and an index of species-specific relative abundance. For eight prey species, we also calibrated metabarcoding data to quantitatively compare DNA abundance between prey items, and to describe an ‘average’ green crab diet at an intertidal slough and an actively cultivated Manila clam bed. From the stomach contents of 61 green crabs, we identified 54 unique taxa belonging to nine phyla. The stomach contents of crabs collected from cultivated Manila clam beds were significantly different from the stomach contents of crabs collected at natural intertidal sloughs. Across all sites, arthropods were the most frequently detected prey, with the native hairy shore crab (Hemigrapsus oregonensis) the single most common prey item. Of the eight species included in the quantitative model, two ecologically-important native species – the sand shrimp (Crangon franciscorum) and the Pacific staghorn sculpin (Leptocottus armatus) – were the most abundant in crab stomach contents, when present. In addition to providing timely information on green crab diet, our research demonstrates the novel application of a recently developed model for more quantitative DNA metabarcoding. This represents another step in the ongoing evolution of DNA-based diet analysis towards producing the quantitative data necessary for modeling invasive species impacts.
DOI: 10.5281/zenodo.10967264
title: Github Repository for: European green crab predation in a Washington State estuary revealed with DNA metabarcoding

description: Fisher, MC, Grason, EW, Stote, A, Kelly, RP, Litle, K, & PS McDonald. (2024). Invasive European green crab (Carcinus maenas) predation in a Washington State estuary revealed with DNA metabarcoding. DOI:10.1371/journal.pone.0302518

Github release v1.1 of the repository for Fisher et al. 2024, "European green crab predation in a Washington State estuary revealed with DNA metabarcoding." For the most updated repository, see: github.com/mfisher5/Green-crab-dDNA

Contains the code and minimum dataset necessary to replicate study findings.

 

---

Abstract: Predation by invasive species can threaten local ecosystems and economies. The European green crab (Carcinus maenas), one of the most widespread marine invasive species, is an effective predator associated with clam and crab population declines outside of its native range. In the U.S. Pacific Northwest, green crab has recently increased in abundance and expanded its distribution, generating concern for estuarine ecosystems and associated aquaculture production. However, regionally-specific information on the trophic impacts of invasive green crab is very limited. We compared the stomach contents of green crabs collected on shellfish aquaculture beds versus natural intertidal sloughs in Willapa Bay, Washington, to provide the first in-depth description of European green crab diet at a particularly crucial time for regional management. We first identified putative prey items using DNA metabarcoding of stomach content samples. We compared diet composition across sites using prey presence/absence and an index of species-specific relative abundance. For eight prey species, we also calibrated metabarcoding data to quantitatively compare DNA abundance between prey items, and to describe an ‘average’ green crab diet at an intertidal slough and an actively cultivated Manila clam bed. From the stomach contents of 61 green crabs, we identified 54 unique taxa belonging to nine phyla. The stomach contents of crabs collected from cultivated Manila clam beds were significantly different from the stomach contents of crabs collected at natural intertidal sloughs. Across all sites, arthropods were the most frequently detected prey, with the native hairy shore crab (Hemigrapsus oregonensis) the single most common prey item. Of the eight species included in the quantitative model, two ecologically-important native species – the sand shrimp (Crangon franciscorum) and the Pacific staghorn sculpin (Leptocottus armatus) – were the most abundant in crab stomach contents, when present. In addition to providing timely information on green crab diet, our research demonstrates the novel application of a recently developed model for more quantitative DNA metabarcoding. This represents another step in the ongoing evolution of DNA-based diet analysis towards producing the quantitative data necessary for modeling invasive species impacts.
DOI: 10.15468/dl.7bm83y
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Haliotis roei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188051-230224095556074/datasets/export for details.
DOI: 10.15468/dl.wt4tmz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Caulocystis cephalornithos)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188013-230224095556074/datasets/export for details.
DOI: 10.15468/dl.gvpknc
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hylobates agilis F.Cuvier, 1821",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000120-150407101314760/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f79giv
title: Occurrence Download

description: A dataset containing 1640 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xylopia frutescens Aubl."
 ]
}

 The dataset includes 1640 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000756-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.53qz58
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Thalassoma jansenii)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188014-230224095556074/datasets/export for details.
DOI: 10.15468/dl.ehnnwv
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parodia ibicuiensis (Prestlé) Anceschi & Magli"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0181826-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mxmg2b
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bonia Balansa"
 ]
}

 The dataset includes 29 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000120-150410134957023/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gpqn2t
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elatostema pauperatum H.J.P.Winkl."
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188075-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nzjf7h
title: Occurrence Download

description: A dataset containing 31108 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aedes albopictus (Skuse, 1894)"
 ]
}

 The dataset includes 31108 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000756-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aim72v
title: Occurrence Download

description: A dataset containing 1007 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Poaceae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "InstitutionCode is CP"
 ]
}

 The dataset includes 1007 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000120-150422101436696/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5bdnbu
title: Occurrence Download

description: A dataset containing 1236 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Machine Observation"
 ]
 },
 "Country is Mexico",
 "TaxonKey is Icterus parisorum Bonaparte, 1838"
 ]
}

 The dataset includes 1236 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127612-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2m5wuv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Thalassoma lutescens)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188017-230224095556074/datasets/export for details.
DOI: 10.15468/dl.dhew2g
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Amphiroa anceps)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188016-230224095556074/datasets/export for details.
DOI: 10.15468/dl.la6h9y
title: Occurrence Download

description: A dataset containing 51739 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The crustaceans collection (IU) of the Muséum national d'Histoire naturelle (MNHN - Paris)"
 ]
}

 The dataset includes 51739 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000120-150512124619364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9vav5j
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nasa lenta (J.F.Macbr) Weigend"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0181827-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.