cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/x2ry7bcm95.1
title: Code for "A NEW METHOD FOR IDENTIFYING THE ROLE OF MARITAL PREFERENCES AT SHAPING MARRIAGE PATTERNS"

description: The paper "A NEW METHOD FOR IDENTIFYING THE ROLE OF MARITAL PREFERENCES AT SHAPING MARRIAGE PATTERNS" (by Anna Naszodi and Francisco Mendonca) develops a new method for transforming contingency tables. The transformation preserves the Liu-Lu matrix of the table while making the marginal distributions equal to their target marginals. This transformation is essential for counterfactual decompositions where assortativity in marital preferences is assumed to be characterized by the measure proposed by Liu and Lu (2006) for dichotomous assorted trait variables, or by the generalized Liu-Lu matrix (developed by Naszodi and Mendonca for polytomous ordered assorted trait variables). The paper ("A NEW METHOD FOR IDENTIFYING THE ROLE OF MARITAL PREFERENCES AT SHAPING MARRIAGE PATTERNS") illustrates the application of the new method by a counterfactual decomposition. We decompose changes in the prevalence of homogamy in the US between 1980 and 2010. The uploaded files allow one to replicate all the calculations in the paper and to apply the new method in other empirical settings as well. The method is suitable for analyzing marital sorting along a polytomous ordered trait variables (such as the highest level of educational attainment, or income bracket), but also for analyzing inter-generational mobility. The new method is implemented in Excel, Visual Basic, and R.
DOI: 10.17632/vn9px7s4fm.1
title: Dataset for Provenance study of the Lubok Antu Mélange from the Lupar valley, West Sarawak, Borneo: Implications for the closure of eastern Meso-Tethys

description: Table S1-S4
DOI: 10.17632/tpsvyby4n3.1
title: Shaping Climate Environment Outlook

description: Replication Data for Paper "The Role of Income and Economic Issue Importance Shifts in Shaping Climate Change and Environmental Outlook."
DOI: 10.6084/m9.figshare.10730060
title: MOESM4 of Functional Haplotype and eQTL Analyses of Genes Affecting Cadmium Content in Cultivated Rice

description: Additional file 4: Table S1. Proteins associated with expression of OsLCD by eQTL analysis. Table S2. Proteins associated with expression of OsMTP1 by eQTL analysis. Table S3. Proteins associated with expression of Os11g0485200 by eQTL analysis. Table S4. Proteins associated with expression of GWAS candidate gene (Os01g0611300) by eQTL analysis.
DOI: 10.6084/m9.figshare.10730051
title: MOESM2 of Functional Haplotype and eQTL Analyses of Genes Affecting Cadmium Content in Cultivated Rice

description: Additional file 2: Table S1. DNA sequencing and rice core collection information for 279 cultivars. Table S2. RNA sequencing information for 163 cultivars.
DOI: 10.6084/m9.figshare.10730057
title: MOESM3 of Functional Haplotype and eQTL Analyses of Genes Affecting Cadmium Content in Cultivated Rice

description: Additional file 3: Table S1. The inorganic component concentration in contaminated paddy soils. Table S2 Chemical properties in the contaminated paddy soils.
DOI: 10.6084/m9.figshare.10730051.v1
title: MOESM2 of Functional Haplotype and eQTL Analyses of Genes Affecting Cadmium Content in Cultivated Rice

description: Additional file 2: Table S1. DNA sequencing and rice core collection information for 279 cultivars. Table S2. RNA sequencing information for 163 cultivars.
DOI: 10.6084/m9.figshare.10730060.v1
title: MOESM4 of Functional Haplotype and eQTL Analyses of Genes Affecting Cadmium Content in Cultivated Rice

description: Additional file 4: Table S1. Proteins associated with expression of OsLCD by eQTL analysis. Table S2. Proteins associated with expression of OsMTP1 by eQTL analysis. Table S3. Proteins associated with expression of Os11g0485200 by eQTL analysis. Table S4. Proteins associated with expression of GWAS candidate gene (Os01g0611300) by eQTL analysis.
DOI: 10.6084/m9.figshare.10730057.v1
title: MOESM3 of Functional Haplotype and eQTL Analyses of Genes Affecting Cadmium Content in Cultivated Rice

description: Additional file 3: Table S1. The inorganic component concentration in contaminated paddy soils. Table S2 Chemical properties in the contaminated paddy soils.
DOI: 10.6084/m9.figshare.10730015
title: MOESM3 of Host factors associated with Giardia duodenalis infection in dogs across multiple diagnostic tests

description: Additional file 3: Table S3. Raw data. Table S4. Prevalence of gastrointestinal parasites, compared to previous performed studies in similar dog populations.
DOI: 10.17632/zfsfkh2ssx.1
title: The Role of Income and Economic Issue Importance Shifts in Shaping Climate Change and Environmental Outlook

description: The Role of Income and Economic Issue Importance Shifts in Shaping Climate Change and Environmental Outlook Replication File
DOI: 10.6084/m9.figshare.10730015.v1
title: MOESM3 of Host factors associated with Giardia duodenalis infection in dogs across multiple diagnostic tests

description: Additional file 3: Table S3. Raw data. Table S4. Prevalence of gastrointestinal parasites, compared to previous performed studies in similar dog populations.
DOI: 10.6084/m9.figshare.10729979
title: MOESM9 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 9. OTUs which were identified as being significantly more abundant by DESeq2 between locations within the chicken intestinal tract at day 3 of age.
DOI: 10.6084/m9.figshare.10729976
title: MOESM8 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 8. OTUs which were identified as being significantly more abundant by DESeq2 between chicken ileal samples at different timepoints.
DOI: 10.6084/m9.figshare.10729964
title: MOESM5 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 5. OTUs which were identified as being significantly more abundant by DESeq2 between chicken caecal samples at different timepoints.
DOI: 10.6084/m9.figshare.10729970
title: MOESM7 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 7. OTUs which were identified as being significantly more abundant by DESeq2 between chicken jejunal samples at different timepoints.
DOI: 10.6084/m9.figshare.10729979.v1
title: MOESM9 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 9. OTUs which were identified as being significantly more abundant by DESeq2 between locations within the chicken intestinal tract at day 3 of age.
DOI: 10.6084/m9.figshare.10729967
title: MOESM6 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 6. OTUs which were identified as being significantly more abundant by DESeq2 between chicken duodenal samples at different timepoints.
DOI: 10.6084/m9.figshare.10729976.v1
title: MOESM8 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 8. OTUs which were identified as being significantly more abundant by DESeq2 between chicken ileal samples at different timepoints.
DOI: 10.6084/m9.figshare.10729958
title: MOESM4 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 4. OTUs which were identified as being significantly more abundant by DESeq2 between locations within the chicken intestinal tract at day 1 of age.
DOI: 10.6084/m9.figshare.10729964.v1
title: MOESM5 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 5. OTUs which were identified as being significantly more abundant by DESeq2 between chicken caecal samples at different timepoints.
DOI: 10.6084/m9.figshare.10729967.v1
title: MOESM6 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 6. OTUs which were identified as being significantly more abundant by DESeq2 between chicken duodenal samples at different timepoints.
DOI: 10.6084/m9.figshare.10729958.v1
title: MOESM4 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 4. OTUs which were identified as being significantly more abundant by DESeq2 between locations within the chicken intestinal tract at day 1 of age.
DOI: 10.6084/m9.figshare.10729970.v1
title: MOESM7 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 7. OTUs which were identified as being significantly more abundant by DESeq2 between chicken jejunal samples at different timepoints.
DOI: 10.17632/5ptks9t6b7.2
title: CGP violacein treatment Vs. control

description: A collection of ~6000 heterozygous yeast strains, was treated with sublethal doses of violacein or vehicle treated control for 10 generations in a way to identify violacein-induced happloinsufficiency profile. Each strain had one copy of each of the predicted S. cerevisiae open reading frame (ORF) replaced by an antibiotic resistance marker (KANMX4) flanked by 20 bp DNA sequences (barcodes), allowing quantitative analysis of differential growth through barcode sequencing. This dataset shows barcodes that were differentially expressed in the comparisons between violacein treatment and vehicle treated control. We considered as hits, strains that were most affected by violacein treatment, p-value &lt;0.001 and log2 fold change &lt;0.
DOI: 10.6084/m9.figshare.10729937
title: MOESM1 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 1. Abundance of OTUs in chicken intestinal samples (not sub-sampled).
DOI: 10.6084/m9.figshare.10729946
title: MOESM2 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 2. Taxonomy of bacterial OTUs.
DOI: 10.6084/m9.figshare.10729937.v1
title: MOESM1 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 1. Abundance of OTUs in chicken intestinal samples (not sub-sampled).
DOI: 10.6084/m9.figshare.10729946.v1
title: MOESM2 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 2. Taxonomy of bacterial OTUs.
DOI: 10.6084/m9.figshare.10729931
title: MOESM13 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 13. Sample metadata.
DOI: 10.6084/m9.figshare.10729922
title: MOESM12 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 12. OTUs which were identified as being significantly more abundant by DESeq2 between locations within the chicken intestinal tract at 5â€‰weeks of age.
DOI: 10.6084/m9.figshare.10729922.v1
title: MOESM12 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 12. OTUs which were identified as being significantly more abundant by DESeq2 between locations within the chicken intestinal tract at 5â€‰weeks of age.
DOI: 10.6084/m9.figshare.10729931.v1
title: MOESM13 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 13. Sample metadata.
DOI: 10.6084/m9.figshare.10729913
title: MOESM10 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 10. OTUs which were identified as being significantly more abundant by DESeq2 between locations within the chicken intestinal tract at day 7 of age.
DOI: 10.6084/m9.figshare.10729916
title: MOESM11 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 11. OTUs which were identified as being significantly more abundant by DESeq2 between locations within the chicken intestinal tract at day 14 of age.
DOI: 10.6084/m9.figshare.10729916.v1
title: MOESM11 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 11. OTUs which were identified as being significantly more abundant by DESeq2 between locations within the chicken intestinal tract at day 14 of age.
DOI: 10.6084/m9.figshare.10729901
title: MOESM6 of Transcriptome sequencing of a keystone aquatic herbivore yields insights on the temperature-dependent metabolism of essential lipids

description: Additional file 6: Datasets of responsive gene sets with LOG2-fold change values, adjusted p-values and the respective COG category.
DOI: 10.6084/m9.figshare.10729913.v1
title: MOESM10 of Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

description: Additional file 10. OTUs which were identified as being significantly more abundant by DESeq2 between locations within the chicken intestinal tract at day 7 of age.
DOI: 10.17632/n9499hd7n3.1
title: Common and particular biochemical responses of Unio tumidus to herbicide, pharmaceuticals and their combined exposure with heating

description: The priority list of freshwater pollutants is increasingly amended by pharmaceuticals. Their impact on the aquatic biota can be modulated by the presence of typical pollutants, like pesticides, and/or abnormal heating. The aim of this study was to elucidate potentially hazardous impact of combined environmental factors on the freshwater mussels by analysing various sets of biochemical markers. We treated the bivalve molluscs of Unio tumidus with non-steroidal anti-inflammatory drug diclofenac (Dc, 2 nM), calcium antagonist and antihypertensive drug nifedipine (Nf, 2 nM) or organophosphonate glyphosate-based herbicide Roundup MAX (Rn, 79 nM of glyphosate) at 18oC as well as with the mixture of these substances at 18oC (Mix) or 25oC (MixT) during 14 days. The concentrations used were correspondent to the environmentally relevant levels. The biomarkers of stress and toxicity were evaluated in digestive gland, except the lysosomal membrane stability measured in hemocytes. All exposures caused an oxidative stress due to the decreased SOD and GST activities and decreased GSH/GSSG ratio, increased levels of thiobarbituric acid-reactive substances and protein carbonyls (with exceptions of Dc and MixT treatments). Diclofenac increased lysosomal cathepsin D activity. Nifedipine increased lysosomal membrane stability and caspase-3 activity. Roundup caused a dramatic distortion of metallo-thiolome due to highly increased levels of GSH and metallothionein-related thiols (MTSH) as well as depletion of Zn, Cu and Cd in the composition of metallothioneins, and decreased Zn/Cu molar ratio in the tissue. The particular toxicity of Rn was also attested by decreased lysosomal membrane stability and cholinesterase activity, and by the highest value of integrated biomarker index. Generally, compound-specific effects were expressed in U. tumidus responses to the mixture of pharmaceuticals and herbicide at both temperatures. Multi-marker approach and integrative analysis proved to be a useful tool for understanding possible future risks to freshwater mussels under a combination of xenobiotics and warming climate.
DOI: 10.6084/m9.figshare.10729901.v1
title: MOESM6 of Transcriptome sequencing of a keystone aquatic herbivore yields insights on the temperature-dependent metabolism of essential lipids

description: Additional file 6: Datasets of responsive gene sets with LOG2-fold change values, adjusted p-values and the respective COG category.
DOI: 10.6084/m9.figshare.10729889
title: MOESM9 of Patterns of spatial genetic structures in Aedes albopictus (Diptera: Culicidae) populations in China

description: Additional file 9: Table S7. Genetic distance and geographical distance between 34 populations.
DOI: 10.6084/m9.figshare.10729889.v1
title: MOESM9 of Patterns of spatial genetic structures in Aedes albopictus (Diptera: Culicidae) populations in China

description: Additional file 9: Table S7. Genetic distance and geographical distance between 34 populations.
DOI: 10.6084/m9.figshare.10729880
title: MOESM8 of Patterns of spatial genetic structures in Aedes albopictus (Diptera: Culicidae) populations in China

description: Additional file 8: Table S6. FST and Nm between 34 populations.
DOI: 10.6084/m9.figshare.10729880.v1
title: MOESM8 of Patterns of spatial genetic structures in Aedes albopictus (Diptera: Culicidae) populations in China

description: Additional file 8: Table S6. FST and Nm between 34 populations.
DOI: 10.17632/bs8sdhg8h3.2
title: StarProtocol2020-1

description: This includes a circuit board CAD data and firmware for a microprocessor.
DOI: 10.6084/m9.figshare.10729856
title: MOESM5 of Patterns of spatial genetic structures in Aedes albopictus (Diptera: Culicidae) populations in China

description: Additional file 5: Table S5. Genetic indices of 34 populations.
DOI: 10.6084/m9.figshare.10729850
title: MOESM4 of Patterns of spatial genetic structures in Aedes albopictus (Diptera: Culicidae) populations in China

description: Additional file 4: Table S4. Analysis of linkage disequilibrium.
DOI: 10.6084/m9.figshare.10729844
title: MOESM3 of Patterns of spatial genetic structures in Aedes albopictus (Diptera: Culicidae) populations in China

description: Additional file 3: Table S3. Analysis of Hardyâ€“Weinberg equilibrium.
DOI: 10.6084/m9.figshare.10729844.v1
title: MOESM3 of Patterns of spatial genetic structures in Aedes albopictus (Diptera: Culicidae) populations in China

description: Additional file 3: Table S3. Analysis of Hardyâ€“Weinberg equilibrium.
DOI: 10.6084/m9.figshare.10729850.v1
title: MOESM4 of Patterns of spatial genetic structures in Aedes albopictus (Diptera: Culicidae) populations in China

description: Additional file 4: Table S4. Analysis of linkage disequilibrium.
DOI: 10.6084/m9.figshare.10729856.v1
title: MOESM5 of Patterns of spatial genetic structures in Aedes albopictus (Diptera: Culicidae) populations in China

description: Additional file 5: Table S5. Genetic indices of 34 populations.
DOI: 10.6084/m9.figshare.10729838
title: MOESM2 of Patterns of spatial genetic structures in Aedes albopictus (Diptera: Culicidae) populations in China

description: Additional file 2: Table S2. The pairwise genetic relatedness between individuals.
DOI: 10.17632/sxgmtwhvbs.1
title: Data for "The Ganzflicker Experience: Rhythmic visual flicker induces complex illusions in people with visual imagery but not aphantasia"

description: ----------------------------------------------- DESCRIPTION ----------------------------------------------- README for the data and analysis scripts for the manuscript currently titled "The Ganzflicker Experience: Rhythmic visual flicker induces complex illusions in people with visual imagery but not aphantasia" by Varg T Königsmark, Johanna Bergmann, and Reshanne R Reeder. Submitted to Mendeley Data by Reshanne Reeder. The experiment was performed entirely online, and all responses to the questionnaire were collected with Google Forms, and downloaded in .ods format (LibreOffice Calc spreadsheet). Several responses on the questionnaire were text statements, which were recoded as single digits for analysis. All names, e-mail addresses, and personalized written responses were removed so that individuals could not be identified. The coded data are saved in .csv format to perform analyses in JASP. Scripts to create the figures in the manuscript are coded in python. Abstract Rhythmic visual flicker is known to induce illusions and altered states of consciousness. Previous research has suggested that the form of “simple” illusions (e.g., geometric patterns) is constrained by the functional architecture of early visual cortical areas. As of yet, the nature of more “complex” illusions (e.g., naturalistic living and non-living things) is under-represented within the current literature. Very recent findings showed that visual imagery vividness correlates positively with the likelihood to experience anomalous percepts. Here, we tested whether imagery ability is associated with individual differences in both susceptibility to, and complexity of, flicker-induced illusions (FII). We recruited a sample of people with aphantasia (the complete lack of visual imagery) and a sample of people with imagery. We found that people with visual imagery were more susceptible to FII than people with aphantasia. Moreover, moderately-vivid imagers were more likely to see complex FII than weakly-vivid imagers, whereas people with aphantasia only experienced simple FII. People with and without imagery experienced a similar range of emotions during Ganzflicker stimulation, but people with imagery experienced more altered states of consciousness. These findings fit with recent research on the connection between visual imagery strength (specifically, the influence of imagery on perception) and visual cortical excitability. Visual imagery ability and anomalous perceptual experience may depend on the same cortical mechanism that gates effects of visual stimulation on natural cortical excitability levels. Future studies will investigate whether more fine-grained changes in cortical excitability induced by different visual flicker frequencies can modulate FII-susceptibility and FII-complexity.
DOI: 10.6084/m9.figshare.10729826
title: MOESM1 of Patterns of spatial genetic structures in Aedes albopictus (Diptera: Culicidae) populations in China

description: Additional file 1: Table S1. The Wolbachia infection status in populations.
DOI: 10.6084/m9.figshare.10729838.v1
title: MOESM2 of Patterns of spatial genetic structures in Aedes albopictus (Diptera: Culicidae) populations in China

description: Additional file 2: Table S2. The pairwise genetic relatedness between individuals.
DOI: 10.6084/m9.figshare.10729826.v1
title: MOESM1 of Patterns of spatial genetic structures in Aedes albopictus (Diptera: Culicidae) populations in China

description: Additional file 1: Table S1. The Wolbachia infection status in populations.
DOI: 10.17632/fs8yhz3v2f.1
title: The Magnitude of Increased US Melanoma Incidence Attributable to Ground-Level Ultraviolet Radiation Intensity Trends: Supplemental Data

description: The potential amount of UV radiation received by the average American in the continental US has increased. Our regression model suggests that up to 30% of increases in NHW-MI could be directly or indirectly explained by increasing ground-level UV intensity. Furthermore, this relationship is supported by a significantly disproportionate representation of states in the highest quartile of NHW-MI rate increases located in US Census regions with the highest increases in UVI. Our findings suggest rising ground-level UV intensity may have played a role in increasing NHW-MI.
DOI: 10.6084/m9.figshare.10729766
title: MOESM7 of Are there shared neural correlates between dyslexia and ADHD? A meta-analysis of voxel-based morphometry studies

description: Additional file 7. GingerALE meta-analysis script for ADHD &lt; TD.
DOI: 10.6084/m9.figshare.10729766.v1
title: MOESM7 of Are there shared neural correlates between dyslexia and ADHD? A meta-analysis of voxel-based morphometry studies

description: Additional file 7. GingerALE meta-analysis script for ADHD &lt; TD.
DOI: 10.17632/s6p2cbk8kx.1
title: Treatment Outcomes in Confluent and Reticulated Papillomatosis: A Systematic Review

description: Confluent and Reticulated Papillomatosis (CARP) is a rare dermatosis characterized by persistent, hyperpigmented, reticulated papules and plaques. The aim of this systematic review was to summarize CARP treatment options and their outcomes. Attached are supplemental files for this systematic review.
DOI: 10.6084/m9.figshare.10729757
title: MOESM6 of Are there shared neural correlates between dyslexia and ADHD? A meta-analysis of voxel-based morphometry studies

description: Additional file 6. GingerALE meta-analysis script for Dyslexia &lt; TD.
DOI: 10.6084/m9.figshare.10729745
title: MOESM5 of Are there shared neural correlates between dyslexia and ADHD? A meta-analysis of voxel-based morphometry studies

description: Additional file 5. GingerALE meta-analysis script for Dylexia &gt; TD.