cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10036577.v1
title: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies
DOI: 10.6084/m9.figshare.10036580
title: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies
DOI: 10.6084/m9.figshare.10036580.v1
title: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies
DOI: 10.6084/m9.figshare.10036583
title: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies
DOI: 10.6084/m9.figshare.10036583.v1
title: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies
DOI: 10.6084/m9.figshare.10036586
title: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies
DOI: 10.6084/m9.figshare.10036586.v1
title: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies
DOI: 10.6084/m9.figshare.11609451
title: Comparative Study between Surgical Repair of Atrial Septal Defect via Median Sternotomy, Right Submammary Thoracotomy, and Right Vertical Infra-Axillary Thoracotomy

description: Abstract Objective: To compare the results of surgical repair via median sternotomy, right submammary thoracotomy, and right vertical infra-axillary thoracotomy for atrial septal defect (ASD). Methods: This is a retrospective analysis of the relative perioperative and postoperative data of 136 patients who underwent surgical repair for ASD with the abovementioned three different treatments in our hospital from June 2014 to December 2017. Results: The results of the surgeries were all satisfactory in the three groups. No statistically significant difference was found in operative time, duration of cardiopulmonary bypass, blood transfusion amount, postoperative mechanical ventilation time, duration of intensive care unit, length of hospital stay, and hospital costs. However, the median sternotomy group had the longest incision. Meanwhile, there was no significant difference in postoperative complications. Conclusion: All three types of surgical incisions can be safely and effectively used to repair ASD. The treatments via right submammary thoracotomy and right vertical infra-axillary thoracotomy have advantages over the treatment via median sternotomy in cosmetic results and should be the recommended options.
DOI: 10.6084/m9.figshare.11609451.v1
title: Comparative Study between Surgical Repair of Atrial Septal Defect via Median Sternotomy, Right Submammary Thoracotomy, and Right Vertical Infra-Axillary Thoracotomy

description: Abstract Objective: To compare the results of surgical repair via median sternotomy, right submammary thoracotomy, and right vertical infra-axillary thoracotomy for atrial septal defect (ASD). Methods: This is a retrospective analysis of the relative perioperative and postoperative data of 136 patients who underwent surgical repair for ASD with the abovementioned three different treatments in our hospital from June 2014 to December 2017. Results: The results of the surgeries were all satisfactory in the three groups. No statistically significant difference was found in operative time, duration of cardiopulmonary bypass, blood transfusion amount, postoperative mechanical ventilation time, duration of intensive care unit, length of hospital stay, and hospital costs. However, the median sternotomy group had the longest incision. Meanwhile, there was no significant difference in postoperative complications. Conclusion: All three types of surgical incisions can be safely and effectively used to repair ASD. The treatments via right submammary thoracotomy and right vertical infra-axillary thoracotomy have advantages over the treatment via median sternotomy in cosmetic results and should be the recommended options.
DOI: 10.6084/m9.figshare.10036613
title: MOESM2 of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: Additional file 2: Numbers of genes expressed in eight tissues using different cutoff and gene lists. Table S1: a summary of numbers of genes expressed in eight tissues using different cutoff percentiles (5%, 10%, 15%). Table S2: genes expressed in both leaves and medium buds. Table S3: genes expressed in leaves, small buds and medium buds. Table S4: genes expressed in both leaves and small buds. Table S5: genes expressed in both small buds and medium buds. Table S6: genes expressed in leaves, sepals and petals. Table S6: genes expressed in both carpels and stamens. Table S7: genes expressed in either sepals and/or petals. Table S8: genes expressed in carpels and either sepals and/or petals. Table S9: genes expressed in carpels, stamens and either sepals and/or petals. Table S10: genes expressed in stamens and either sepals and/or petals. (XLSX 8 MB)
DOI: 10.6084/m9.figshare.10036613.v1
title: MOESM2 of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: Additional file 2: Numbers of genes expressed in eight tissues using different cutoff and gene lists. Table S1: a summary of numbers of genes expressed in eight tissues using different cutoff percentiles (5%, 10%, 15%). Table S2: genes expressed in both leaves and medium buds. Table S3: genes expressed in leaves, small buds and medium buds. Table S4: genes expressed in both leaves and small buds. Table S5: genes expressed in both small buds and medium buds. Table S6: genes expressed in leaves, sepals and petals. Table S6: genes expressed in both carpels and stamens. Table S7: genes expressed in either sepals and/or petals. Table S8: genes expressed in carpels and either sepals and/or petals. Table S9: genes expressed in carpels, stamens and either sepals and/or petals. Table S10: genes expressed in stamens and either sepals and/or petals. (XLSX 8 MB)
DOI: 10.6084/m9.figshare.10036616
title: MOESM3 of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: Additional file 3: GO comparison between all genes on the chip and differentially expressed genes. Gene numbers comparing all genes on the chip, genes expressed across different tissues and those differentially expressed between any two tissues in each GO category. (XLS 20 KB)
DOI: 10.6084/m9.figshare.10036616.v1
title: MOESM3 of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: Additional file 3: GO comparison between all genes on the chip and differentially expressed genes. Gene numbers comparing all genes on the chip, genes expressed across different tissues and those differentially expressed between any two tissues in each GO category. (XLS 20 KB)
DOI: 10.6084/m9.figshare.22618016
title: Additional file 16 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancers

description: Additional file 16: Table S10. Public datasets analyzed in this paper.
DOI: 10.6084/m9.figshare.10036619
title: MOESM4 of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: Additional file 4: Genes preferentially expressed in eight tissues and all the genes differentially expressed. This additional file contains lists of all the genes preferentially and differentially expressed between any two tissues and lists of genes preferentially expressed in each tissue over all the other tissues. Column sequence, abbreviation and the version of annotation are the same as those used in Table 1 and all the other supplemental tables in Additional file 2. All the expression values are log2 ratio. (XLS 904 KB)
DOI: 10.6084/m9.figshare.10036619.v1
title: MOESM4 of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: Additional file 4: Genes preferentially expressed in eight tissues and all the genes differentially expressed. This additional file contains lists of all the genes preferentially and differentially expressed between any two tissues and lists of genes preferentially expressed in each tissue over all the other tissues. Column sequence, abbreviation and the version of annotation are the same as those used in Table 1 and all the other supplemental tables in Additional file 2. All the expression values are log2 ratio. (XLS 904 KB)
DOI: 10.6084/m9.figshare.22618178.v1
title: Additional file 5 of Automated quantitative trait locus analysis (AutoQTL)

description: Additional file 5.
DOI: 10.6084/m9.figshare.22618172.v1
title: Additional file 3 of Automated quantitative trait locus analysis (AutoQTL)

description: Additional file 3.
DOI: 10.6084/m9.figshare.22618169
title: Additional file 2 of Automated quantitative trait locus analysis (AutoQTL)

description: Additional file 2.
DOI: 10.6084/m9.figshare.22618175
title: Additional file 4 of Automated quantitative trait locus analysis (AutoQTL)

description: Additional file 4.
DOI: 10.6084/m9.figshare.22618172
title: Additional file 3 of Automated quantitative trait locus analysis (AutoQTL)

description: Additional file 3.
DOI: 10.6084/m9.figshare.22618193
title: Additional file 9 of Automated quantitative trait locus analysis (AutoQTL)

description: Additional file 9.
DOI: 10.6084/m9.figshare.10036622
title: MOESM5 of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: Additional file 5: Expression levels of Arabidopsis homologs of selected poppy genes. This additional file contains information about the expression levels of Arabidopsis homologs of selected poppy genes of interest listed in the tables in our study. (XLS 34 KB)
DOI: 10.6084/m9.figshare.5840973.v1
title: UHRF1 epigenetically down-regulates UbcH8 to inhibit apoptosis in cervical cancer cells

description: UHRF1 (ubiquitin-like, containing PHD and RING finger domains 1) is an important epigenetic regulator that plays a part in DNA methylation, protein methylation and ubiquitination. It is also frequently overexpressed in many types of cancers, including cervical cancer, which is caused by human papillomavirus (HPV). In this study, we showed that UHRF1 was up-regulated in HPV oncogene E7 expressing cells and HPV-positive cervical cancer cells. We demonstrated that UHRF1 down-regulated the expression of UBE2L6 gene that encodes the ISG15-conjugating enzyme UbcH8. Overexpression of UHRF1 reduced UBE2L6 while knockdown UHRF1 elevated the expression of UBE2L6. We showed that UHRF1 regulated UBE2L6 gene by promoter hypermethylation in cervical cancer cells. Consistent with the functions of UHRF1, restored expression of UbcH8 induced apoptosis. These findings establish UBE2L6 as a novel target of UHRF1 that regulates the apoptosis function of UHRF1. Our studies suggest that UHRF1/ UbcH8 can be manipulated for therapy in cervical cancer.
DOI: 10.6084/m9.figshare.10036622.v1
title: MOESM5 of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: Additional file 5: Expression levels of Arabidopsis homologs of selected poppy genes. This additional file contains information about the expression levels of Arabidopsis homologs of selected poppy genes of interest listed in the tables in our study. (XLS 34 KB)
DOI: 10.6084/m9.figshare.22618097.v1
title: Additional file 9 of Constructing a seventeen-gene signature model for non-obstructive azoospermia based on integrated transcriptome analyses and WGCNA

description: Additional file 9: Supplementary Material 1. Detailed information of protein-protein interaction network.
DOI: 10.15156/bio/sh0891330.10fu
title: SH0891330.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5517/ccdc.csd.cc2j8ypg
title: CCDC 2332306: Experimental Crystal Structure Determination

description: Related Article: Fumiya Kobayashi, Yuta Takatsu, Daisuke Saito, Masaki Yoshida, Masako Kato, Makoto Tadokoro|2024|Inorg.Chem.|63|15323|doi:10.1021/acs.inorgchem.4c02058
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15156/bio/sh0891331.10fu
title: SH0891331.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0891332.10fu
title: SH0891332.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0891333.10fu
title: SH0891333.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0891334.10fu
title: SH0891334.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0891335.10fu
title: SH0891335.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0891336.10fu
title: SH0891336.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0891337.10fu
title: SH0891337.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5517/ccdc.csd.cc2k3n4h
title: CCDC 2356996: Experimental Crystal Structure Determination

description: Related Article: Nikita M. Ankudinov, Alina A. Komarova, Evgeniya S. Podyacheva, Denis A. Chusov, Anastasia A. Danshina, Dmitry S. Perekalin|2024|Chem.Commun.|60|8601|doi:10.1039/D4CC02969K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.