cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30071191.v2
title: Protein complex structure predictions

description: Alphafold3 protein complex structure predictions for the protein complexes analyzed in the article "Structure-informed evolutionary analysis of the meiotic recombination machinery".
DOI: 10.15468/dl.4rje6x
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dioscorea multispicata"
 ]
}

 The dataset includes 60 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010172-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60520/ieda/113146
title: Glass chemistry of tephra deposits from the 1991 eruption of Hudson

description: This data collection describes the glass geochemistry of visible (1-10 cm thick) tephra deposits from lake cores and terrestrial samples collected in Chile, in locations north and south of Lago General Carrera, in January 2020. Data was collected as part of an investigation into the preservation quality of tephra deposits from the 1991 eruption of Hudson (GVP vnum 358057) across a range of preservation environments (small lakes, terrestrial woodland, terrestrial shrub, terrestrial grass). Geochemistry measurements were taken to confirm the source of the tephra deposit. Tephra was analysed on an EPMA at the University of St Andrews.
description: Streeter, R. T., Cutler, N. A., Lawson, I. L., Hutchison, W., Dominguez, L., Hiles, W.
Variable preservation of the 1991 Hudson tephra in small lakes and on land (in preparation)
DOI: 10.15468/dl.9vpwjz
title: Occurrence Download

description: A dataset containing 3821 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "DatasetKey is one of (Bird Conservation Targeting Project (BCTP) in the UK, archived data (2001-2010), Bird Conservation Targeting Project (BCTP) in the UK, 2006-2011)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is c71f0513-c95a-4e98-abad-0c222b87ec66",
 "TaxonKey is Scolopax",
 "Year 1990-2025"
 ]
}

 The dataset includes 3821 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010173-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15014769
title: A new framework for interpreting ex situ wetland methane production and consumption rates—data and code

description: Ex situ incubations are the primary method used to quantify rates of gross methane production and consumption, which together determine net wetland methane emissions. However, a clear framework for interpreting this data is lacking, and it remains unknown whether ex situ rates and their environmental drivers conform to trends expected from in situ ecological theory. We synthesized published rates of methanogenesis, aerobic methane oxidation, and anaerobic methane oxidation and used boosted regression tree models to identify key drivers. We found median aerobic methane oxidation rates were 2.7 times greater than those of methanogenesis—a paradox given wetlands are net methane sources. We demonstrate this discrepancy is an artifact of methodology: aerobic methane oxidation is measured as a potential rate, whereas methanogenesis is commonly measured as a substrate-limited rate. Within our methanogenesis dataset, potential rates were an order of magnitude higher than substrate-limited rates (p<0.001), confirming that these two assay types yield quantitatively distinct results. Our driver analysis suggests that 1. rates of methanogenesis are strongly controlled by labile carbon availability from the soil surface, 2. the balance between methanogenesis and anaerobic methane oxidation is shifting with warming, and 3. species-specific plant effects structure all pathways of methane production and consumption via rhizosphere interactions. This synthesis demonstrates the value of ex situ data for generating mechanistic hypotheses while highlighting the need for future research to prioritize minimally disruptive in situ measurements to obtain accurate rate magnitudes.
DOI: 10.5281/zenodo.15014768
title: A new framework for interpreting ex situ wetland methane production and consumption rates—data and code

description: Ex situ incubations are the primary method used to quantify rates of gross methane production and consumption, which together determine net wetland methane emissions. However, a clear framework for interpreting this data is lacking, and it remains unknown whether ex situ rates and their environmental drivers conform to trends expected from in situ ecological theory. We synthesized published rates of methanogenesis, aerobic methane oxidation, and anaerobic methane oxidation and used boosted regression tree models to identify key drivers. We found median aerobic methane oxidation rates were 2.7 times greater than those of methanogenesis—a paradox given wetlands are net methane sources. We demonstrate this discrepancy is an artifact of methodology: aerobic methane oxidation is measured as a potential rate, whereas methanogenesis is commonly measured as a substrate-limited rate. Within our methanogenesis dataset, potential rates were an order of magnitude higher than substrate-limited rates (p<0.001), confirming that these two assay types yield quantitatively distinct results. Our driver analysis suggests that 1. rates of methanogenesis are strongly controlled by labile carbon availability from the soil surface, 2. the balance between methanogenesis and anaerobic methane oxidation is shifting with warming, and 3. species-specific plant effects structure all pathways of methane production and consumption via rhizosphere interactions. This synthesis demonstrates the value of ex situ data for generating mechanistic hypotheses while highlighting the need for future research to prioritize minimally disruptive in situ measurements to obtain accurate rate magnitudes.
DOI: 10.5281/zenodo.17726058
title: SARS-CoV-2 Sequenzdaten aus Deutschland

description: Im Datensatz "SARS-CoV-2-Sequenzdaten aus Deutschland" umfasst vollständige Virusgenomsequenzen sowie zugehörige Metadaten aus bundesweit erhobenen Proben. Die Proben werden in Zusammenarbeit vom IMSSC2-Labornetzwerk, dem Nationalen Referenzzentrum für Coronaviren an der Charité sowie dem RKI sequenziert und bioinformatisch analysiert. Der Datensatz ermöglicht eine fundierte molekular-epidemiologische Analyse der SARS-CoV-2-Ausbreitung in Deutschland und stellt eine zentrale Ressource für Forschung und öffentliche Gesundheitsüberwachung dar.
DOI: 10.5281/zenodo.17722480
title: Computational Data: 4CzIPN Photosensitizes the Cobaloxime-catalyzed Light-Driven Hydrogen Evolution Reaction

description: Computational details: PS-4CzIPN and CAT-CoOxime

The fully relaxed equilibrium structures (as XYZ-files) of the 4CzIPN photosensitizer within its singlet ground state (S0), first excited singlet state (S1) and lowest energy triplet state (T1). Further, simulated structural properties of the CoOxime catalyst are provided in its non-reduced state (S0), as well as in its singly (red1) reduced form as doublet and quartet (D0 and Q0) as well as in its double reduced (red2) form as singlet and triplet species (S0 and T1). All calculations were performed at the PBE0/def2svp level of theory using a implicit solvent model (SMD: acetonitrile).

Electronic characters of (ground state) open-shell species are indicated by spin densities and charge density difference plots for the corresponding electronic transitions. High resolution images as well as cube-files are provided accordingly.
DOI: 10.34740/kaggle/dsv/13883379
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.21227/f4hs-tw30
title: "magnetic data for XGBoost-HASM"

description: " Satellite magnetic data used in the magnetic data fusion experiments were obtained from the International Geomagnetic Reference Field (IGRF); the UAV magnetic data set was acquired by the Institute of Biology and Environmental Sciences of the Chinese Academy of Sciences (IBSE), Xinjiang, China, through a unmanned aerial vehicle (UAV) in 2014. "
DOI: 10.15468/dl.dvgygw
title: Occurrence Download

description: A dataset containing 188515 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Upupa epops",
 "Country is France"
 ]
}

 The dataset includes 188515 records from 2054 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010123-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6twvcc
title: Occurrence Download

description: A dataset containing 150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-72.67719 4.23996,-72.88573 4.00163,-73.02476 3.77322,-72.90559 3.6044,-72.73677 3.38593,-72.5183 3.40579,-72.12107 3.39586,-71.68413 3.46537,-71.06843 3.52496,-70.84995 3.68385,-70.73078 3.90232,-70.75065 4.3492,-71.25711 4.68684,-71.95225 4.5776,-72.67719 4.23996))",
 "TaxonKey is Crocodylia"
 ]
}

 The dataset includes 150 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007283-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25326/4151-yj91
title: bacillus subtilis + None - Other

description: Publication of the dataset
DOI: 10.25326/f8ew-0k87
title: CO+CH4 + None - Instruments intercomparison - 2015-10-06

description: Publication of the dataset
DOI: 10.25326/ncqs-1c75
title: CO + None - Instruments intercomparison - 2015-10-15

description: Publication of the dataset
DOI: 10.25326/trh5-kt65
title: alpha-pinene+NOx + O3 - Aerosol study - physical properties - 2012-05-29

description: Publication of the dataset
DOI: 10.25326/9rvs-3w54
title: pentane + None - Instruments intercomparison - 2016-04-08

description: Publication of the dataset
DOI: 10.25326/wcqd-mz83
title: alpha-pinene+beta-caryophyllene+NOx + O3 - Aerosol study - physical properties - 2012-11-21

description: Publication of the dataset
DOI: 10.25326/exnd-ab23
title: Humic acid+Nonanoic acid +Sea salts + O3 - Other - 2014-11-24

description: Publication of the dataset
DOI: 10.25326/3cb0-zh86
title: pinene+ozone+water+ice + None - Aerosol study - physical properties - 2005-10-19

description: Publication of the dataset
DOI: 10.25326/3w4s-x657
title: 3-methyl-1,2,3-butanetricarboxylic acid (MBTCA) + None - Aerosol study - physical properties - 2015-09-06

description: Publication of the dataset
DOI: 10.13133/uniroma1/81j4cs/kczfzc
title: al-Fajr_1-18_1990_TheUnionOfLaborAndFreedoms_OCR.pdf

description: :unav
DOI: 10.25326/e7j5-9h79
title: Beech Wood Emissions From a Log Stove (B) + OH - Other - 2015-11-06

description: Publication of the dataset
DOI: 10.25326/4ayz-1421
title: Beech Wood Emissions from a Log Stove (B) + OH - Other - 2015-11-09

description: Publication of the dataset
DOI: 10.25326/bbn4-p183
title: Beech Wood Emissions from a Log Wood Stove (A) + OH - Other - 2015-10-30

description: Publication of the dataset
DOI: 10.25326/1x21-kk72
title: Emissions from Pine and Spruce Chips from a Pellet Stove + OH - Other - 2015-11-15

description: Publication of the dataset
DOI: 10.25326/wnb8-kq09
title: 3-methyl-1,2,3-butanetricarboxylic acid (MBTCA) + None - Aerosol study - physical properties - 2015-09-09

description: Publication of the dataset
DOI: 10.5281/zenodo.15014986
title: CREATE DATASET

description: This dataset provides spatial data and visualizations for flood inundation scenarios generated from the H&H model and their impact on road networks in Harris County, Texas. It includes inundation depth maps, road inundation data, and estimated road damage assessments across 17 flood scenarios. The dataset is structured as GeoJSON files and accompanying visual figures.

This dataset is part of the research conducted under the Coastal REsearch And Transportation Education (CREATE) program, funded by the Tier 1 University Transportation Center (UTC) and supported by the U.S. Department of Transportation (DOT).
DOI: 10.5066/p96u849f
title: Soil-water content and soil temperature data near Sugarloaf Mountain, Colorado, USA

description: This product is a dataset of volumetric soil-water content and soil temperature in an area affected by wildfire in the Boulder Creek watershed, in the Colorado Front Range, USA. The data contained in this archive continue through 7 years of recovery following a wildfire in 2010. Automated sensors (Decagon Devices, 5TE and 5TM) were used to collect the data at 1-minute and 5-minute temporal resolution at several depths in the soil profile. Sites where data were collected include burned (i.e. fire affected) and unburned sites with north-facing and south-facing slope aspect. Datasets of volumetric soil-water content and soil temperature are contained in files listed under Child Items.
DOI: 10.15468/dl.fx5kqa
title: Occurrence Download

description: A dataset containing 153450 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "OccurrenceStatus is Present",
 "TaxonKey is Caracara plancus (J.F.Miller, 1777)"
 ]
}

 The dataset includes 153450 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009769-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yfxxu3
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Oxypogon stuebelii"
 ]
}

 The dataset includes 12 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033225-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6bxxd8
title: Occurrence Download

description: A dataset containing 130077 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "GadmGid is GBR",
 "OccurrenceStatus is Present",
 "TaxonKey is Impatiens glandulifera"
 ]
}

 The dataset includes 130077 records from 132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033179-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25824/redu/orxjks
title: LOCCA: Manually annotated CT dataset of lung lobes in COVID-19 and Cancer patients

description: This dataset contains two subsets of volumetric lung CT images, accompanied by annotations of the pulmonary lobes. The first subset consists of 30 CT scans from Brazilian patients with COVID-19, with manual annotations for each pulmonary lobe. The second subset includes only 30 manual annotations of the pulmonary lobes from cancer patients, whose volumetric images are publicly available in the Medical Segmentation Decathlon. Additionally, the data include a characterization of the severity of abnormal findings for each image. For further details, see the related publication at Descriptor and LobePrior.
DOI: 10.15468/dl.kraxu7
title: Occurrence Download

description: A dataset containing 474 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((100.31332 -3.69895,100.91724 -3.15542,99.01238 -0.67684,98.1996 -1.08197,100.31332 -3.69895))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amphibia"
 ]
}

 The dataset includes 474 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033231-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5nzywu
title: Occurrence Download

description: A dataset containing 88587 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 {
 "or" : [
 "Geometry POLYGON((-2.13645 53.24659,-1.41375 53.24659,-1.41375 53.96929,-2.13645 53.96929,-2.13645 53.24659))",
 "Geometry POLYGON((-10.72577 53.2255,-11.10931 51.13202,-8.50444 50.90829,-6.49086 49.74169,-4.5412 49.6458,-3.24676 50.02934,-0.97748 50.02934,1.25983 50.74848,2.37849 51.73929,2.49035 52.52235,1.93102 53.81679,0.6206 55.46282,-0.2104 56.53353,-1.15327 58.16357,-2.03222 59.56988,-3.74216 59.56988,-5.7078 59.31419,-7.27392 58.78682,-8.66425 57.2207,-10.13448 55.70253,-10.72577 53.2255))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Talpa europaea"
 ]
}

 The dataset includes 88587 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033100-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30619298
title: Raw data supporting "Methyl jasmonate enhances HXK2-mediated indolic glucosinolate biosynthesis in broccoli"

description: Epidemiological studies show that consuming cruciferous vegetables such as broccoli lowers the risk of malignant tumors, an effect largely attributed to glucosinolates and their hydrolysis products. In plants, glucosinolates also act as a “sulfur-bomb” defense against biotic and abiotic stresses, underscoring their dual importance for human health and crop resilience. While the biosynthetic framework of glucosinolates has been well resolved in <i>Arabidopsis thaliana</i>, its regulation in economically relevant Brassica crops remains less understood. Here, we investigated the effect of exogenous methyl jasmonate (MeJA) on glucosinolate accumulation in broccoli sprouts. MeJA treatment enhanced antioxidant capacity and triggered a significant increase in glucosinolate content. Transcriptomic analysis revealed MeJA-dependent reprogramming of genes involved in glucosinolate biosynthesis and degradation, alongside modules regulating redox balance, carbohydrate and sulfur metabolism, and flavonoid production. Notably, the carbohydrate-related genes, especially hexokinase gene <i>BoHXK2</i><sup><em>LF</em></sup>, were significantly upregulated. Functional validation via hairy-root overexpression of <i>BoHXK2</i><sup><em>LF</em></sup> demonstrated a marked increase in neoglucobrassicin, indolic glucosinolates, and total glucosinolates, an effect that was further amplified by co-application of MeJA. Collectively, these results highlight the potential of MeJA and <i>BoHXK2</i><sup><em>LF</em></sup> to enhance broccoli’s nutritional value and stress resilience of broccoli.
DOI: 10.6084/m9.figshare.30619298.v1
title: Raw data supporting "Methyl jasmonate enhances HXK2-mediated indolic glucosinolate biosynthesis in broccoli"

description: Epidemiological studies show that consuming cruciferous vegetables such as broccoli lowers the risk of malignant tumors, an effect largely attributed to glucosinolates and their hydrolysis products. In plants, glucosinolates also act as a “sulfur-bomb” defense against biotic and abiotic stresses, underscoring their dual importance for human health and crop resilience. While the biosynthetic framework of glucosinolates has been well resolved in <i>Arabidopsis thaliana</i>, its regulation in economically relevant Brassica crops remains less understood. Here, we investigated the effect of exogenous methyl jasmonate (MeJA) on glucosinolate accumulation in broccoli sprouts. MeJA treatment enhanced antioxidant capacity and triggered a significant increase in glucosinolate content. Transcriptomic analysis revealed MeJA-dependent reprogramming of genes involved in glucosinolate biosynthesis and degradation, alongside modules regulating redox balance, carbohydrate and sulfur metabolism, and flavonoid production. Notably, the carbohydrate-related genes, especially hexokinase gene <i>BoHXK2</i><sup><em>LF</em></sup>, were significantly upregulated. Functional validation via hairy-root overexpression of <i>BoHXK2</i><sup><em>LF</em></sup> demonstrated a marked increase in neoglucobrassicin, indolic glucosinolates, and total glucosinolates, an effect that was further amplified by co-application of MeJA. Collectively, these results highlight the potential of MeJA and <i>BoHXK2</i><sup><em>LF</em></sup> to enhance broccoli’s nutritional value and stress resilience of broccoli.
DOI: 10.17028/rd.lboro.30111970
title: Supplementary information files for "Artificial transneurons emulate neuronal activity in different areas of brain cortex"

description: Supplementary files for article "Artificial transneurons emulate neuronal activity in different areas of brain cortex"<br><br>Rapid development of memristive elements emulating biological neurons creates new opportunities for brain-like computation at low energy consumption. A first step toward mimicking complex neural computations is the analysis of single neurons and their characteristics. Here we measure and model spiking activity in artificial neurons built using diffusive memristors. We compare activity of these artificial neurons with the spiking activity of biological neurons measured in sensory, pre-motor, and motor cortical areas of the monkey (male) brain. We find that artificial neurons can operate in diverse self-sustained and noise-induced spiking regimes that correspond to the activity of different types of cortical neurons with distinct functions. We demonstrate that artificial neurons can function as trans-functional devices (transneurons) that reconfigure their behaviour to attain instantaneous computational needs, each capable of emulating several biological neurons.<br><br>© The Author(s), CC BY 4.0
DOI: 10.17028/rd.lboro.30111970.v1
title: Supplementary information files for "Artificial transneurons emulate neuronal activity in different areas of brain cortex"

description: Supplementary files for article "Artificial transneurons emulate neuronal activity in different areas of brain cortex"<br><br>Rapid development of memristive elements emulating biological neurons creates new opportunities for brain-like computation at low energy consumption. A first step toward mimicking complex neural computations is the analysis of single neurons and their characteristics. Here we measure and model spiking activity in artificial neurons built using diffusive memristors. We compare activity of these artificial neurons with the spiking activity of biological neurons measured in sensory, pre-motor, and motor cortical areas of the monkey (male) brain. We find that artificial neurons can operate in diverse self-sustained and noise-induced spiking regimes that correspond to the activity of different types of cortical neurons with distinct functions. We demonstrate that artificial neurons can function as trans-functional devices (transneurons) that reconfigure their behaviour to attain instantaneous computational needs, each capable of emulating several biological neurons.<br><br>© The Author(s), CC BY 4.0