cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14027718
title: ROSMAP meQTL Results for Endothelial cells with CpGs

description: This dataset contains methylation quantitative trait loci (meQTL) results for the following study:

"regionalpcs improve discovery of DNA methylation associations with complex traits"

Tiffany Eulalio*1, Min Woo Sun1, Olivier Gevaert1, Michael D. Greicius2, Thomas J. Montine3, Daniel Nachun*‡3, Stephen B. Montgomery*‡1,3

‡ These authors contributed equally as senior authors

* Corresponding authors: Tiffany Eulalio (eulalio@alumn.stanford.edu), Daniel Nachun (dnachun@stanford.edu), Stephen B. Montgomery (smontgom@stanford.edu)

 Author affiliations:

1.     Department of Biomedical Data Science, Stanford University, Stanford, CA

2.     Department of Neurology & Neurological Sciences, Stanford University, Stanford, CA

3.     Department of Pathology, Stanford University, Stanford, CA

 

Dataset description:

This dataset contains QTL results generated from FastQTL, organized by region type (full gene, gene body, preTSS, and promoters) and summary types (averages and regional principal components).

Contents:



Parquet tar files: These compressed archives contain output files in Parquet format from FastQTL, split by chromosome. parquet1 includes chromosomes 1-10, and parquet2 includes chromosomes 11-22.

cis_qtl_summary_stats.csv: Provides summary statistics for each phenotype-variant pair, including effect sizes, p-values, TSS distances, and additional details.

cis_qtl.signif_pairs.csv: Contains the significant QTL results identified by FastQTL.

cis_qtls.time_to_run.txt: Reports the running time for FastQTL analysis.

cis_qtls.cis_qtl.txt.gz: Contains comprehensive results for all cis QTLs.


This dataset is intended to support replication and further exploration of QTL associations across different genomic regions and summary methods.
DOI: 10.5281/zenodo.14029094
title: ROSMAP meQTL Results for Oligodendrocytes with CpGs

description: This dataset contains methylation quantitative trait loci (meQTL) results for the following study:

"regionalpcs improve discovery of DNA methylation associations with complex traits"

Tiffany Eulalio*1, Min Woo Sun1, Olivier Gevaert1, Michael D. Greicius2, Thomas J. Montine3, Daniel Nachun*‡3, Stephen B. Montgomery*‡1,3

‡ These authors contributed equally as senior authors

* Corresponding authors: Tiffany Eulalio (eulalio@alumn.stanford.edu), Daniel Nachun (dnachun@stanford.edu), Stephen B. Montgomery (smontgom@stanford.edu)

 Author affiliations:

1.     Department of Biomedical Data Science, Stanford University, Stanford, CA

2.     Department of Neurology & Neurological Sciences, Stanford University, Stanford, CA

3.     Department of Pathology, Stanford University, Stanford, CA

 

Dataset description:

This dataset contains QTL results generated from FastQTL, organized by region type (full gene, gene body, preTSS, and promoters) and summary types (averages and regional principal components).

Contents:



Parquet tar files: These compressed archives contain output files in Parquet format from FastQTL, split by chromosome. parquet1 includes chromosomes 1-10, and parquet2 includes chromosomes 11-22.

cis_qtl_summary_stats.csv: Provides summary statistics for each phenotype-variant pair, including effect sizes, p-values, TSS distances, and additional details.

cis_qtl.signif_pairs.csv: Contains the significant QTL results identified by FastQTL.

cis_qtls.time_to_run.txt: Reports the running time for FastQTL analysis.

cis_qtls.cis_qtl.txt.gz: Contains comprehensive results for all cis QTLs.


This dataset is intended to support replication and further exploration of QTL associations across different genomic regions and summary methods.
DOI: 10.5281/zenodo.14029321
title: ROSMAP meQTL Results for Neurons with regionalpcs and averages

description: This dataset contains methylation quantitative trait loci (meQTL) results for the following study:

"regionalpcs improve discovery of DNA methylation associations with complex traits"

Tiffany Eulalio*1, Min Woo Sun1, Olivier Gevaert1, Michael D. Greicius2, Thomas J. Montine3, Daniel Nachun*‡3, Stephen B. Montgomery*‡1,3

‡ These authors contributed equally as senior authors

* Corresponding authors: Tiffany Eulalio (eulalio@alumn.stanford.edu), Daniel Nachun (dnachun@stanford.edu), Stephen B. Montgomery (smontgom@stanford.edu)

 Author affiliations:

1.     Department of Biomedical Data Science, Stanford University, Stanford, CA

2.     Department of Neurology & Neurological Sciences, Stanford University, Stanford, CA

3.     Department of Pathology, Stanford University, Stanford, CA

 

Dataset description:

This dataset contains QTL results generated from FastQTL, organized by region type (full gene, gene body, preTSS, and promoters) and summary types (averages and regional principal components).

Contents:



Parquet tar files: These compressed archives contain output files in Parquet format from FastQTL, split by chromosome. parquet1 includes chromosomes 1-10, and parquet2 includes chromosomes 11-22.

cis_qtl_summary_stats.csv: Provides summary statistics for each phenotype-variant pair, including effect sizes, p-values, TSS distances, and additional details.

cis_qtl.signif_pairs.csv: Contains the significant QTL results identified by FastQTL.

cis_qtls.time_to_run.txt: Reports the running time for FastQTL analysis.

cis_qtls.cis_qtl.txt.gz: Contains comprehensive results for all cis QTLs.


This dataset is intended to support replication and further exploration of QTL associations across different genomic regions and summary methods.
DOI: 10.5281/zenodo.14032989
title: DreamRetroerData

description: The data used in the paper "A data-driven group retrosynthesis planning model inspired by neurosymbolic programming"
DOI: 10.5281/zenodo.14288397
title: Data for "Development and Evaluation of a New Correlated K-distribution Scheme for BCC_RAD Radiative Transfer Model"

description: Data and matlab scripts for plotting.
DOI: 10.6084/m9.figshare.28123037
title: Supplementary Material for: Assessing the validity of computerized algorithms for determining pulse wave velocity: a clinical study

description: Introduction: Aortic stiffness, assessed through carotid-femoral pulse wave velocity (PWV), has been associated with an increased risk of cardiovascular events and mortality. Measurements of PWV are based on the proper identification of the foot of the pulse waveform by either the maximum of the second derivative method (as used in Complior) or the intersecting tangents algorithms (as used in SphygmoCor). These approaches can give different results, especially at higher PWV ranges. However, these devices also differ by signal acquisition technology, signal filtering, and quality control algorithms, making the true contribution of analytical algorithms uncertain. The aim of the present study was to identify the differences in pulse transit time (PTT) and PWV calculated by these two algorithms when provided with the same input signal. 
Methods: In 113 subjects, 346 recordings of 10 seconds were obtained using the Complior Analyse system (PWVComp-2nd). The pulse waves were imported into Matlab and filtered (n= 4102 pairs of pulse waves), where after inspection 3770 pairs were available for determination of PTT using second-derivative and intersecting tangents algorithms (PTTMat-2nd and PTTMat-IT) and the respective PWVMat-2nd and PWVMat-IT for each pair. Additionally, the same pulse wave recordings were analyzed using the SphygmoCor system in simulation mode, employing the intersecting tangents algorithm (PWVSphyg-IT).
Results: The mean beat-by-beat PTTMat-2nd and PTTMat-IT were 54.55 ± 18.55 ms (range 15.00 – 129.00) and 54.61 ± 18.61 ms (range 15.00 – 126.00) (P= 0.09) respectively. The mean per participant PWVMat-2nd and PWVMat-IT were 9.67 ± 3.46 m/s and 9.66 ± 3.4 m/s with a mean difference of 0.01 ± 0.32 m/s (P= 0.35). The PWVComp-2nd and PWVSphyg-IT were 9.48 ± 3.25 m/s and 9.59 ± 3.25 m/s with a mean difference of 0.11± 0.66 m/s (P= 0.04). 
Conclusion: The present study shows that the difference between the two algorithms is negligible across a wide range of PTT, and hence does not support the need for adjusting PWV according to the algorithm used for determining PTT.
DOI: 10.6084/m9.figshare.28123145
title: Supplementary Material for: The Associations Between Breastfeeding and Early Childhood Caries: a Prospective Cohort Study

description: Introduction
The association between breastfeeding status and early childhood caries (ECC) remains inconclusive. Few studies evaluate the breastfeeding status including both duration and exclusivity according to the WHO recommendations on breastfeeding. This study aimed to investigate the association between breastfeeding status and ECC.
Methods
This prospective cohort study comprised 3,666 children whose breastfeeding status was precisely evaluated. Poisson regression models and multivariable linear regression models were employed to analyze the associations of breastfeeding status with risk of ECC, and mean dmfs (decayed, missing and filled primary tooth surfaces) in 3-year-old children, respectively. The data were collected from 2014 to 2020, and the analysis was conducted at 2023.
Results 
The prevalences of ECC in offspring breastfed for &lt;6 months, 6-11 months, 12-24 months and &gt; 24 months was 9%, 12%, 17% and 23%, respectively. Offspring breastfed for 12-24 months and over 24 months had a 1.82 times (95% CI, 1.40 to 2.37; P &lt;0.001) and 2.48 times (95% CI, 1.63 to 3.75; P &lt;0.001) higher risk of ECC, compared to those breastfed for less than 6 months. Offspring breastfed for 12-24 months showed a mean dmfs increase of 0.32 (95% CI, 0.21 to 0.44; P &lt;0.001), while those breastfed for over 24 months had a mean dmfs increase of 0.51 (95% CI, 0.27 to 0.74; P &lt;0.001), compared to those breastfed for less than 6 months. Among offspring breastfed for over 24 months, those exclusively breastfed for at least 6 months had significantly lower mean dmfs compared to those exclusively breastfed for less than 6 months (P for heterogeneity =0.003). A significant interaction was observed between breastfeeding duration and exclusive breastfeeding duration on the association with mean dmfs (P for interaction &lt;0.001). 
Conclusion
Our findings suggest that breastfeeding for over 12 months was associated with increased risk of ECC. Preventive interventions for dental caries should be implemented as early as possible, as breastfeeding is beneficial to children’s health. The associations between breastfeeding duration and exclusivity with ECC should be investigated more thoroughly, particularly with adjustments for accurately measured sugar consumption.
DOI: 10.15468/dl.dvuytu
title: Occurrence Download

description: A dataset containing 217 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "OccurrenceStatus is Present",
 "TaxonKey is Euphorbia nevadensis subsp. nevadensis"
 ]
}

 The dataset includes 217 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060964-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8396744
title: RRab Templates - Decam

description: Multi-band templates in the DECAM photometric system for RRab stars.
DOI: 10.15468/dl.p893y3
title: Occurrence Download

description: A dataset containing 822365 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The Taiwan Breeding Bird Survey Data"
 ]
}

 The dataset includes 822365 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060958-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26212643
title: The dataset of main grain land changes in China over 1985–2020

description: Continuous, Accurate, and detailed information on main grain land (MGL) areas is crucial for provisioning food security and making policies affecting sustainable agricultural production. Here, we developed the change map of MGL with resolution 30m in China for the period 1985–2020 using the Landsat image-based random forest algorithm on the GEE platform. Finally, the planting intensity, gain time and loss time of MGL was calculated. Results indicate that our mapping results are highly consistent with the annual planting area of various grain crops according to national statistics. The proportion of different MGL types in 2020 is presented as follows: single maize (38.55%) &gt; single rice (23.23%) &gt; single wheat (15.42%) &gt; wheat & maize (12.60%) &gt; double rice (7.65%) &gt; wheat & rice (2.48%). Due to over half of MGL expansion occurring after 2000, the average planting intensity of MGL in China is 19.74 years in the past 36 years. The consistent, high-resolution data of MGL change can support progress toward sustainable agricultural management and food production.For the convenience of users, the detailed classification data of MGL year by year has been made public on the GEE platform. Users with needs can view and download detailed MGL data for any year, including 7 MGL subtypes, according to the following link.
Data viewing and download links:
https://code.earthengine.google.com/d371ab6f6c1bd274c85af270e4ad09c5 
<br>
Directly call ID of dataset in GEE:
var MGL = ee.ImageCollection(“projects/ee-linshi-428901/assets/MrainlandType”)
<br>
Data usage code：
var year = 2020 // Any year between 1985 and 2020
var mglyear = MGL.filterMetadata('time', "equals", year).max()
var visParams = {
  min: 1,
  max: 7,
  palette: ['cyan', 'blue','green', 'yellow', 'red','purple','white']
};
Map.addLayer(mglyear.selfMask(),visParams,"MGL"+year)
<br>
DOI: 10.6084/m9.figshare.28159982
title: Supplement XI for “Recombinant expression of receptor binding domains of all eight subtypes of botulinum neurotoxin type A for generation of antitoxins with broad reactivity”.

description: Supplement XI for “Recombinant expression of receptor binding domains of all eight subtypes of botulinum neurotoxin type A for generation of antitoxins with broad reactivity”.
DOI: 10.15468/dl.p252t6
title: Occurrence Download

description: A dataset containing 3447 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Annona muricata L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3447 records from 340 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060966-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.shw3xe
title: Occurrence Download

description: A dataset containing 1413 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((119.41591 16.88061,119.07363 15.88354,120.00373 13.81498,120.78502 14.06797,120.74038 14.52186,121.30588 14.33584,121.78954 14.48466,121.70025 15.00552,122.17646 15.83145,119.41591 16.88061))",
 "TaxonKey is Copsychus luzoniensis (Kittlitz, 1832)",
 "Year 2001-2025"
 ]
}

 The dataset includes 1413 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060965-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/0qyt-5y14
title: Design of a Wideband Agile Frequency Synthesizer for the S-C Band Based on DDS

description: The agile frequency source based on direct digital synthesizer (DDS) has become a critical component in high-speed frequency-hopping anti-jamming communication due to its ultra-short frequency switching time, enabling hop rates greater than code rates. This paper proposes a frequency planning method to achieve a high spectral purity agile frequency synthesizer in the range of 3.43-5.73GHz. Experimental results show that the frequency synthesizer has a switching time of less than 10ns, a spuriousfree dynamic range greater than -53dBc, and phase noise values of -91.5dBc/Hz, -92.6dBc/Hz, -101.3dBc/Hz, and -123.5dBc/Hz at frequency offsets of 1kHz, 10kHz, 100kHz, and 1MHz, respectively when outputting 4.00GHz. These results fully validate the feasibility of the proposed method.
DOI: 10.15468/dl.a3zm2m
title: Occurrence Download

description: A dataset containing 12931 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((4.24984 52.09469,5.155 52.06649,5.34974 52.86415,5.06836 53.17367,4.59939 53.22994,4.24984 52.09469))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Haliplidae"
 ]
}

 The dataset includes 12931 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060967-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28160042
title: Supplement XII for “Recombinant expression of receptor binding domains of all eight subtypes of botulinum neurotoxin type A for generation of antitoxins with broad reactivity”.

description: Supplement XII
DOI: 10.15468/dl.7mmd6w
title: Occurrence Download

description: A dataset containing 3985 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Annona reticulata L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3985 records from 174 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060968-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8396763
title: RRab Templates - Sloan

description: Multi-band templates in the Sloan photometric system for RRab stars.
DOI: 10.15468/dl.t54b2j
title: Occurrence Download

description: A dataset containing 25145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ficaria verna Huds.",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1980",
 "Country is Germany"
 ]
}

 The dataset includes 25145 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060970-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18727/archive/97
title: ENTROPY: ExoplaNeT accRetion mOnitoring sPectroscopic surveY

description: The ExoplaNeT accRetion mOnitoring sPectroscopic surveY (ENTROPY) aims at investigating into the until now poorly understood process of accretion among planetary mass companions. The detection of emission lines from accreting gas giants facilitates detailed investigations into this process.
The data released via this collection are the high-resolution (R ∼ 50000), stacked, flux-calibrated 1D spectra obtained with the Echelle spectrograph UVES (3200–6800 Å) of the few known young, planetary-mass objects with observed emission.
description: This is a dynamic dataset; it is growing as new data is added. The DOI refers to the newest available dataset.
DOI: 10.15468/dl.s2sdu2
title: Occurrence Download

description: A dataset containing 8285 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Annona squamosa L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8285 records from 259 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060973-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vsmy2y
title: Occurrence Download

description: A dataset containing 4788 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Graptemys pseudogeographica Stejneger & Barbour, 1933"
 ]
}

 The dataset includes 4788 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025935-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r8g6am
title: Occurrence Download

description: A dataset containing 11061 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Iris versicolor L.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11061 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038482-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93dxfb
title: Occurrence Download

description: A dataset containing 354022 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "TaxonKey is Megaptera novaeangliae (Borowski, 1781)"
 ]
}

 The dataset includes 354022 records from 480 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004671-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ybfvwv
title: Occurrence Download

description: A dataset containing 18204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Geronticus calvus (Boddaert, 1783))",
 "HasCoordinate is true",
 "Country is South Africa"
 ]
}

 The dataset includes 18204 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070814-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rr6h2m
title: Occurrence Download

description: A dataset containing 3125 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trichoderma harzianum Rifai"
 ]
}

 The dataset includes 3125 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025942-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8n93v7
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-9.60364 41.89058,-7.11752 41.89058,-7.11752 43.27922,-9.60364 43.27922,-9.60364 41.89058))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pueraria montana (Lour.) Merr."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004702-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gkq4vn
title: Occurrence Download

description: A dataset containing 15226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Africa",
 "Country is South Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Columba arquatrix Temminck, 1808",
 "Year 2019-2024"
 ]
}

 The dataset includes 15226 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070840-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.