cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3561555.v1
title: Appendix A. Histograms of δ13C values of individual grains of grass pollen for samples from Lake Challa and Lake Rutundu.

description: Histograms of δ13C values of individual grains of grass pollen for samples from Lake Challa and Lake Rutundu.
DOI: 10.6084/m9.figshare.4244501.v1
title: raw reads paleo

description: Illumina raw reads to Ecoli paleo spacers MS<br>
DOI: 10.6084/m9.figshare.18394310.v1
title: ABMDR2000005

description: HLA sequencing data
DOI: 10.6084/m9.figshare.3545330.v3
title: 290 Genomes from the Mediterranean Sea: Supplemental Data

description: A series of data files for the tentatively titled "290 Metagenome-assembled Genomes from the Mediterranean Sea: a resource for marine microbiology" by Benjamin Tully, Elaina Graham, Rohan Sachdeva, and John Heidelberg at the University of Southern California. Data files include, all contigs from Minimus2 + Megahit output used for binning and community assessment, ≥2kb and ≥7.5kb; contig read counts per sample; the putative genome contigs and Prodigal-predicted nucleotide and protein putative CDS FASTA files; the ribosomal marker HMM profiles; reference genome markers; high quality genome markers; low completion bins, and contigs without a bin.
DOI: 10.4225/49/58b60fabab47c
title: BRCA1-DMS

description: BRCA1 benign and deleterious variants
DOI: 10.6084/m9.figshare.1544161.v1
title: Dummy data for the paper: More Precise Methods for National Research Citation Impact Comparisons

description: Dummy data for the paper: More Precise Methods for National Research Citation Impact Comparisons
DOI: 10.6084/m9.figshare.5236300.v1
title: Mammalian Transcriptomes Generated in this study

description: Transcriptomes that were produced in this study.
DOI: 10.17632/krwbw4cjpz
title: Inflation Co-Movement between Latin America and the US: Trends versus Cycles and Developments Since Covid.

description: This is data for the paper "Inflation Co-Movement between Latin America and the US: Trends versus Cycles and Developments Since Covid".
DOI: 10.17632/krwbw4cjpz.1
title: Inflation Co-Movement between Latin America and the US: Trends versus Cycles and Developments Since Covid.

description: This is data for the paper "Inflation Co-Movement between Latin America and the US: Trends versus Cycles and Developments Since Covid".
DOI: 10.6084/m9.figshare.17894687.v3
title: The results of the analysis of macrostructure, superstructure, and microstructure of Indigenous newspapers published in North Sumatra (1916-1925)

description: This table contains information about the results of the macrostructural analysis, superstructure analysis, and microstructural analysis of indigenous newspapers published in North Sumatra (1916-1925)
DOI: 10.6084/m9.figshare.22923983.v1
title: Supplementary Material for: Documented adverse drug reactions and discontinuation of angiotensin converting enzyme inhibitors and angiotensin receptor blockers in chronic kidney disease

description: Background: Angiotensin converting enzyme inhibitors (ACEi) and angiotensin receptor blockers (ARB) are frequently discontinued in patients with chronic kidney disease (CKD). Documented adverse drug reactions (ADRs) in medical records may provide insight into the reasons for treatment discontinuation. Methods: In this retrospective cohort of U.S. veterans from 2005 to 2019, we identified individuals with CKD and a current prescription for an ACEi or ARB (current user group) or a discontinued prescription within the preceding 5 years (discontinued group). Documented ADRs in structured datasets associated with an ACEi or ARB were categorized into 17 pre-specified groups. Logistic regression assessed associations of documented ADRs with treatment discontinuation. Results: There were 882,441 (73.0%) individuals in the current user group and 326,794 (27.0%) in the discontinued group. There were 26,434 documented ADRs, with at least one documented ADR in 7,520 (0.9%) current users and 9,569 (2.9%) of the discontinued group. ADR presence was associated with treatment discontinuation, aOR 4.16 (95% CI 4.03, 4.29). The most common documented ADRs were cough (37.3%), angioedema (14.2%), and allergic reaction (10.4%). ADRs related to angioedema (aOR 3.81, 95% CI 3.47, 4.17), hyperkalemia (aOR 2.03, 95% CI 1.84, 2.24), peripheral edema (aOR 1.53, 95% CI 1.33, 1.77), or acute kidney injury (aOR 1.32, 95% CI 1.15, 1.51) were associated with treatment discontinuation. Conclusions: ADRs leading to drug discontinuation were infrequently documented. ADR types were differentially associated with treatment discontinuation. An understanding of which ADRs lead to treatment discontinuation provides an opportunity to address them at a healthcare system level.
DOI: 10.6084/m9.figshare.24026397.v1
title: Axiom 50K SNP array for 192 individuals from six different pine species. Raw data and array annotation file

description: Individuals from <i>Pinus banksiana</i>,<i> P. contorta</i>,<i> P. nigra</i>,<i> P. tabuliformis</i>,<i> P. strobus </i>and <i>P. cembra</i> genotyped with a 50K Scots pine (P. sylvestris) SNP array developed from whole-genome resequencing.
DOI: 10.6084/m9.figshare.5442184.v3
title: The ChIP-seq row data ox10

description: The ChIP-seq row data of ox10 lines
DOI: 10.6084/m9.figshare.11609226.v1
title: Clinical and care profiles of children and adolescents with Sickle Cell Disease in the Brazilian Northeast region

description: Abstract Objectives: to describe the clinical epidemiological and care profiles of pediatric patients with sickle cell disease. Methods: a descriptive study of all (48) children and adolescents with sickle cell disease, assisted at a public referral hospital in Paraíba State. The information were obtained from the patients’ medical records and interviews were analyzed by using the Epi-Info program 7.2 version, frequency tables were built for the categorical variables and the central measurements and dispersion tendencies were calculated for the variables related to age and hospitalizations. Results: the patients’ age ranged from 15 months to 19 years old (median 8.6 years old); 91.7% considered their skin color mixed/black; 81.3% belong to D and E social class; 48% of the responsible guardians reported to have less than nine years of schooling; 70.9% lived in other cities; 93.8% received late diagnosis and 87.5% had irregular outpatient follow-up, 62,5% had an incomplete or outdated vaccination record. There were 226 hospitalizations; painful crises were the most common causes (55.7%). Each patient was hospitalized, about 5.2 times in the period; the median of total days for being hospitalized was 28. There were no deaths. Cardiac (56.2%) and hepatobiliary (54.3%) were the most common chronic compli-cations. Conclusions: sickle cell disease is a neglected clinical condition in the Brazilian Northeast region, where the appropriate political support for the patients is not fulfilled.
DOI: 10.6084/m9.figshare.14999472.v1
title: Magnon theory data

description: In this work, we treat magnon dispersion in ferrimagnetic insulator and magnon scattering heuristically to drive the thermal-driven magnon current via semi-classical Boltzmann approach. We find that the temperature-dependent longitudinal SSE is dominated by magnon-phonon scattering at low temperature region, rather than magnon-magnon scattering. The relaxation time of magnon-phonon scattering follows <i>T <sup>-3.3 </sup></i> dependence. At very low temperature region, the magnon enters the ballistic transport process, the temperature dependence of the relaxation time is <i>T <sup>-1/2 </sup></i>. This model fits well with the experiment data. In addition, we have also derived equations that explains the position dependence of SSE with in-plan temperature gradient. The transverse distribution of the magnon temperature corresponding to the number of magnons is consistent with the experimental measurement, and the linear spatial distribution of the transverse SSE signal with position is given.
DOI: 10.6084/m9.figshare.20152868.v1
title: drug loading and encapsulation raw data 2

description: Drug loading and encapsulation effeciency raw data 2 <strong>used in the manuscript titled Nanofibrillated cellulose aerogel from Khat (</strong><em><strong>Catha Edulis</strong></em><strong>) waste: fabrication and characterizations</strong>
DOI: 10.6084/m9.figshare.26073847.v2
title: A global meta-analysis on the individual and combined effects of multiple global change factors on plant species richness

description: Plant species richness (PSR) is of significant importance for terrestrial ecosystem functions, yet the effects of multiple global change factors on PSR are underexplored. We conducted a meta-analysis of 654 observations to examine the individual and combined effects of elevated CO<sub>2</sub> (eCO<sub>2</sub>), warming, altered precipitation, and nitrogen (N) addition on PSR. Results show that eCO<sub>2</sub> and increased precipitation stimulated PSR, whereas warming, decreased precipitation, and N addition suppressed it. Antagonistic impacts on PSR were found between N addition and both eCO<sub>2</sub> and altered precipitation. However, the combined effects of warming with eCO<sub>2</sub>, altered precipitation, and N addition were additive. These effects varied with experimental facility, plot and sampling area, and duration as well as ecosystem, climate, and soil texture both in magnitude and direction. Our findings underscore the importance of incorporating experimental settings and site characteristics into regional-scale projections of species richness in response to anthropogenic atmospheric and climatic change.
DOI: 10.6084/m9.figshare.27263259.v3
title: The technical details for a 13-junction watershed network and a modified IEEE 33-bus distribution network

description: The technical details for a 13-junction watershed network and a modified IEEE 33-bus distribution network
DOI: 10.6084/m9.figshare.25366420.v1
title: WeiboText2015

description: This is a text data downloaded from Sina Weibo related to flood disasters.
DOI: 10.6084/m9.figshare.5104438.v1
title: Supplementary Material for: Phenotypic Characterization of Human Chondrocyte Cell Line C-20/A4: A Comparison between Monolayer and Alginate Suspension Culture

description: DNA microarray analysis was used to investigate the molecular phenotype of one of the first human chondrocyte cell lines, C-20/A4, derived from juvenile costal chondrocytes by immortalization with origin-defective simian virus 40 large T antigen. Clontech Human Cancer Arrays 1.2 and quantitative PCR were used to examine gene expression profiles of C-20/A4 cells cultured in the presence of serum in monolayer and alginate beads. In monolayer cultures, genes involved in cell proliferation were strongly upregulated compared to those expressed by human adult articular chondrocytes in primary culture. Of the cell cycle-regulated genes, only two, the CDK regulatory subunit and histone H4, were downregulated after culture in alginate beads, consistent with the ability of these cells to proliferate in suspension culture. In contrast, the expression of several genes that are involved in pericellular matrix formation, including MMP-14, COL6A1, fibronectin, biglycan and decorin, was upregulated when the C-20/A4 cells were transferred to suspension culture in alginate. Also, nexin-1, vimentin, and IGFBP-3, which are known to be expressed by primary chondrocytes, were differentially expressed in our study. Consistent with the proliferative phenotype of this cell line, few genes involved in matrix synthesis and turnover were highly expressed in the presence of serum. These results indicate that immortalized chondrocyte cell lines, rather than substituting for primary chondrocytes, may serve as models for extending findings on chondrocyte function not achievable by the use of primary chondrocytes.
DOI: 10.6084/m9.figshare.16922749.v1
title: Raw data for "Forest structure explains spatial heterogeneity of decadal carbon dynamics in a cool-temperate forest" (Takagi et al. 2024, Environ.Res. Lett. in press)

description: Supplemental data1Data used to make Figs 2, 3(upper), and Fig. 2S (n=23,135).Decadal changes in mean canopy height (ΔMCH) and net biomass (ΔB), and decadal biomass change by growth (ΔG) and by mortality (ΔM) from the year 2004 to 2014 (Fig.2 and Fig. 3(a)) and environmental and forest structural factors (Fig. 2S) with 1-ha spatial resolution. MCH and CHV are ‘mean canopy height’ and ‘canopy height variation’, respectively. Refer ‘Methods’ on how to determine each value, and caption of Fig. 2S for the codes of geology. ‘NA’ for vegetation and geology means there is no representative value for the cell (no category which cover 80% area) or not subjected to the analysis of Fig.5 (plantation).Supplemental data 2Data used to make Fig. 3(lower) (n=23,135).Biomass in 2004 (B2004; Takagi et al., 2015) and decadal changes in net biomass (ΔB), and decadal biomass change by growth (ΔG) and by mortality (ΔM) from the year 2004 to 2014, and two woody residence times (WRTG, WRTM) determined as B2004/ΔG and B2004/(–ΔM), respectively with 1-ha spatial resolution.Supplemental data 3Data used to make Fig.4 (n=2704).11 years average of two vegetation indices, Green ratio (GR) and Normalized Difference Vegetation Index (NDVI), and net biomass change (ΔB), growth (ΔG), and mortality (ΔM). Spatial resolution of ΔB, ΔG, and ΔM was adjusted to that of the two vegetation indices (ca. 330 m × 460 m). ‘NA’ for ΔB, ΔG, and ΔM means that the number of ΔDSM data points in the cell (nΔB, nΔG, and nΔM) is not enough (&lt;80,000) to determine the areal average. Refer ‘Methods’ on how to determine each value.Takagi et al. (2015) Forest biomass and volume estimation using airborne LiDAR in a cool-temperate forest of northern Hokkaido, Japan. Ecological Informatics, 26, 54-60.
DOI: 10.17632/wsvn7pdc5y.1
title: A Colorimetric Thermal Analysis Study of Methylcellulose Hydrogel- Data and Code

description: Colorimetry has shown highly effective results in measuring the temperature of methylcellulose hydrogel and demonstrated the potential to detect both gelation and degelation processes. This capability could be extended to identifying gelation in a wide range of gels. The dataset includes both the images analyzed in the study and full images of the methylcellulose, for further insights. Additionally, the MATLAB code used for the analysis in the paper is included in this dataset.
DOI: 10.17632/wsvn7pdc5y.2
title: Innovative Colorimetric Thermal Study of Methylcellulose Hydrogel via Smartphone Imaging- Data and Code

description: Colorimetry has shown highly effective results in measuring the temperature of methylcellulose hydrogel and demonstrated the potential to detect both gelation and degelation processes. This capability could be extended to identifying gelation in a wide range of gels. The dataset includes both the images analyzed in the study and full images of the methylcellulose, for further insights. Additionally, the MATLAB code used for the analysis in the paper is included in this dataset.
DOI: 10.6084/m9.figshare.19614369.v1
title: Anolis homolechis draft genome (repeat-softmasked)

description: Repeatitive elements annotated by RepeatMasker were softmasked.
DOI: 10.6084/m9.figshare.25997872.v2
title: 2=F1000=Data=Rasha Najim.xlsx

description: Smokers and non-smokers periodontitis
DOI: 10.6084/m9.figshare.4897181.v3
title: 16S rRNA tree of Proteobacteria and Nitrospirae

description: The phylogeny of Proteobacteria and Nitrospirae based on 16S rRNA sequence. GTR+G+I was selected as the best-fit substitution model using jModelTest v2.1.2 prior to phylogeny reconstruction. The maximum-likelihood tree of 16S rRNA was constructed using RAxML v8.2.4 with 500 times of bootstrap.
DOI: 10.17632/wsvn7pdc5y.3
title: Innovative Colorimetric Thermal Study of Methylcellulose Hydrogel via Smartphone Imaging- Data and Code

description: Colorimetry has shown highly effective results in measuring the temperature of methylcellulose hydrogel and demonstrated the potential to detect both gelation and degelation processes. This capability could be extended to identifying gelation in a wide range of gels. The dataset includes both the images analyzed in the study and full images of the methylcellulose, for further insights. Additionally, the MATLAB code used for the analysis in the paper is included in this dataset.
DOI: 10.6084/m9.figshare.1407004.v6
title: Datasets

description: Contains all the datasets available in the TISSUES database with all the data, including the non-confident gene-tissue associations. The non-confident associations are not available at the TISSUES database but were used them in the fold enrichment analyses. The files format is: Taxon_id ENSP tissues_code BTO source evidences confidence_score(stars) linkout
DOI: 10.6084/m9.figshare.20039946.v1
title: <i>Fusarium abutilonis</i> and <i>F. guadeloupense</i>, two novel species in the <i>Fusarium buharicum</i> clade supported by multilocus molecular phylogenetic analyses

description: This study was conducted to elucidate evolutionary relationships and species diversity within the <i>Fusarium buharicum</i> species complex (FBSC). We also evaluate the potential of these species to produce mycotoxins and other bioactive secondary metabolites. Maximum likelihood and maximum parsimony analyses of sequences from portions of four marker loci (ITS rDNA, <i>TEF1, RPB1</i>, and <i>RPB2</i>) and the combined 4495 bp data set support recognition of seven genealogically exclusive species within the FBSC. Two of the three newly discovered species are formally described as <i>F. abutilonis</i> and <i>F. guadeloupense</i> based on concordance of gene genealogies and morphological data. <i>Fusarium abutilonis</i> induces leaf, stem, and root lesions on several weedy Malvaceae (<i>Abution theophrasti, Anoda cristata, Sida spinosa</i>) and a fabaceous host (<i>Senna obtusifolia</i>) in North America and also was recovered from soil in New Caledonia. <i>Fusarium abutilonis</i>, together with its unnamed sister, <i>Fusarium</i> sp. ex common marsh mallow (<i>Hibiscus moscheutos</i>) from Washington state, and <i>F. buharicum</i> pathogenic to cotton and kenaf in Russia and Iran, respectively, were strongly supported as a clade of malvaceous pathogens. The four other species of the FBSC are not known to be phytopathogenic; however, <i>F. guadeloupense</i> was isolated from human blood in Texas and soil in Guadeloupe. The former isolate is unique because it represents the only known case of a fusarial infection disseminated hematogenously by a species lacking microconidia and the only documented fusariosis caused by a member of the FBSC. Whole genome sequence data and extracts of cracked maize kernel cultures were analyzed to assess the potential of FBSC isolates to produce mycotoxins, pigments, and phytohormones.
DOI: 10.6084/m9.figshare.25406200.v1
title: Elsafty_RBCs_Slide_16

description: Each one of (Elsafty_RBCs_Slide_1-25) contains the field images/patches of a specific slide/patient. The names of the patches start with the respective slide/patient number, followed by the unique patch/field number. There is a total of 47,363 patches with 1076x535 pixels size from the 25 slides/patients, the counts of patches per slide/patient are as follows: 1690, 1709, 2697, 2400, 1905, 1803, 2964, 3049, 2464, 2080, 1894, 1852, 2590, 2263, 3328, 983, 1066, 935, 1131, 1237, 1874, 1393, 1277, 1199, and 1580.
DOI: 10.6084/m9.figshare.7455338.v1
title: PM7 COSMO Energetics of Quinones and their Corresponding Anthrone Forms

description: This dataset contains geometries and optimized PM7 COSMO energies for a set of quinones and their corresponding anthrone forms. The smiles strings in this set are given in the .csv file. <br>1. Files are grouped into two batches: Initial conformer generation and PM7 COSMO optimization of these conformers. Each of these is compressed into the corresponding tar.gz file. <br> 2. Once unzipped, the directories contain the inchikey of the molecule, which can be found in the .csv file for a given smiles. The numbers in the directories are a product job orchestration software that managed the submission and archiving of these calculations and does not have any meaning. The set2_ prefix is to avoid directory clashes upon export and also does not have any meaning. <br> 3. Once unzipped, the conformer files take up about 330 MB in total and the PM7 COSMO files take up 605 MB of space. <br> 4. Each conformer directory contains a .smi file containing the smiles of the molecule and between 1 and 20 .xyz files that are the lowest energy conformers of the molecule found using RDKit. <br> 5. Each PM7 COSMO directory contains the input and archive file for the MOPAC calculation. The calculated values in the .csv file are based on the lowest energy conformers found at the PM7 COSMO level of theory. The relative anthrone reaction energy is reported in units of eV and the voltage vs. DHAQ is reported in V. <br> 6. The tabulated half cell potentials in the .csv file were calculated in the following paper: doi.org/10.26434/chemrxiv.6990053.v2. Note that all possible anthrone forms were considered, so the directories contain some calculations for molecules that are not ultimately plotted in the text as they are higher energy anthrone forms.
DOI: 10.6084/m9.figshare.1239476.v1
title: ESTRES LABORAL MSP

description: RELACIONADO CON LA ATENCION PRIMARIA
DOI: 10.6084/m9.figshare.1304528.v1
title: LST MODIS

description: Land Surface Temperature over the Amazon forest. Data extracted from MODIS products.
DOI: 10.6084/m9.figshare.20976067.v1
title: Autosomal linkage map NRF

description: Autosomal sex spesific linkage maps for Norwegian red cattle
DOI: 10.6084/m9.figshare.28695521.v2
title: <b>Genomic Analysis of CpG Sites in RaTG13 Intergenic Regions</b>

description: This project analyzes the distribution of CpG sites in the intergenic regions of the RaTG13 genome. Key outputs include:- Bar chart showing CpG counts across regions.- Line plot showing observed/expected (O/E) ratios of CpG sites.The analysis provides insights into the genomic characteristics of RaTG13 and highlights regions with potential functional significance.
DOI: 10.6084/m9.figshare.8035670.v1
title: Patient 3 CT

description: CTs and MRIs were both acquired under radiotherapy immobilization protocols with patients in the treatment position.<br>CT scans were acquired on one of four machine models (LightSpeed RT16, GE Medical Systems, Waukesha, WI, USA; Brilliance 64 or Brilliance Big Bore, Philips Healthcare, Cambridge, MA, USA; SOMATOM Definition Edge, Siemens, Washington D.C., USA) using x-ray tube currents between 208 – 434 mA at 120 kVp. All scans have slice thicknesses of either 2.5 or 3 mm, with 2.5 or 3 mm of space between slices. Sections are displayed in 512 x 512 pixel matrices and were reconstructed in diameters between 500 – 600 mm. <br>MRI scans were acquired in one of two machine models (Discovery MR750, GE Medical Systems, Waukesha, WI, USA; Ingenia, Philips Healthcare, Cambridge, MA, USA) in 3 Tesla magnetic fields with echo times between 97.72 – 101.82 milliseconds. All scans have slice thicknesses of 2.5 mm, with 2.5 or 4 mm of space between slices. Sections are displayed in 512 x 512 pixel matrices and were reconstructed in 256 mm diameters.
DOI: 10.15468/dl.kxjge4
title: Occurrence Download

description: A dataset containing 3431 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Tiphia femorata Fabricius, 1775"
 ]
}

 The dataset includes 3431 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009452-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.