cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3629099_d1.v1
title: Additional file 1: of A missense mutation in TUBD1 is associated with high juvenile mortality in Braunvieh and Fleckvieh cattle

description: Genotype distribution of 52 sequence variants in LD with BH2. Non-reference allele frequency and genotype distribution of 52 variants in LD with BH2 in 290 animals representing nine cohorts (number of animals homozygous for the reference allele | number of heterozygous animals | number of animals homozygous for the non-reference allele). Grey background highlights a synonymous variant in PPM1E.). Bold type indicates five variants that were located within the 1.14Â Mb BH2 haplotype. Blue background indicates three variants that were not homozygous among 1682 animals that had been sequenced in the 1000 bull genomes project. Red color highlights a missense variant (rs383232842) in the TUBD1 gene. (XLSX 45Â kb)
DOI: 10.6084/m9.figshare.28038467
title: dataset_5

description: Tabular data of e-course 6 ECTS
DOI: 10.6084/m9.figshare.28038467.v2
title: dataset_4

description: Tabular data of e-course 6 ECTS
DOI: 10.6084/m9.figshare.28038467.v3
title: dataset_5

description: Tabular data of e-course 6 ECTS
DOI: 10.6084/m9.figshare.28049810
title: Cuscuta campestris raw GC-MS files

description: Metabolite extraction from Cuscuta campestris stem tissue
DOI: 10.6084/m9.figshare.28049810.v1
title: Cuscuta campestris raw GC-MS files

description: Metabolite extraction from Cuscuta campestris stem tissue
DOI: 10.6084/m9.figshare.c.3629084_d3.v1
title: Additional file 1: of Simultaneous transcriptional profiling of Leishmania major and its murine macrophage host cell reveals insights into host-pathogen interactions

description: Experimental design. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3629297_d8.v1
title: Additional file 8: of Transcriptome analysis of the Holly mangrove Acanthus ilicifolius and its terrestrial relative, Acanthus leucostachyus, provides insights into adaptation to intertidal zones

description: Gene IDs, sequence lengths, gene descriptions and primer sequences used in this study. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3629300_d5.v1
title: Additional file 5: Table S3. of The endonuclease domain of the LINE-1 ORF2 protein can tolerate multiple mutations

description: NGS RNAseq analysis of HeLa and 293 cells. RNAseq reads from HeLa and 293 cells were analyzed to confirm gene expression from several kinases and control genes (ACTB, GAPDH). Expression is reported as TPM, transcripts per kilobase million. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3629300_d6.v1
title: Additional file 10: Table S4. of The endonuclease domain of the LINE-1 ORF2 protein can tolerate multiple mutations

description: Sequences of primers used in this study for site-directed mutagenesis. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3629297_d9.v1
title: Additional file 4: of Transcriptome analysis of the Holly mangrove Acanthus ilicifolius and its terrestrial relative, Acanthus leucostachyus, provides insights into adaptation to intertidal zones

description: Pairwise Kimura two-parameter distances of the combined chloroplast fragments for the six Acanthus species. The abbreviations were listed in Additional file 9. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3629339_d1.v1
title: Additional file 3: Table S3. of Midgut proteome of an argasid tick, Ornithodoros erraticus: a comparison between unfed and engorged females

description: Non-redundant host proteins identified in Soluble fraction, S-1, from midgut of engorged ticks at 48 h post-feeding (fed group). (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3629345_d1.v1
title: Additional file 1: of An interspecific assessment of Bergmann’s rule in 22 mammalian families

description: All phylogenies used in analyses. R script for data extraction and analyses. Detailed results/raw output from SLOUCH. SLOUCH input data. Likelihood plots for all half-life estimations. (ZIP 2442 kb)
DOI: 10.6084/m9.figshare.c.3629339_d2.v1
title: Additional file 2: Table S2. of Midgut proteome of an argasid tick, Ornithodoros erraticus: a comparison between unfed and engorged females

description: Non-redundant tick proteins identified in the midgut of engorged ticks at 48 h post-feeding (fed group). (XLSX 115 kb)
DOI: 10.6084/m9.figshare.c.3629348_d1.v1
title: Additional file 2: S1. of Assessing Ebola-related web search behaviour: insights and implications from an analytical study of Google Trends-based query volumes

description: Dataset of raw weekly GT data and weekly new cases of Ebola as according to the WHO patient database and situation report at the global level (Sheet 1); in the three main affected West African Ebola countries (Guinea – Sheet 2, Sierra Leone – Sheet 3 and Liberia – Sheet 4); raw weekly GT data in all countries where primary cases of Ebola were registered and Pearson’s correlations (Sheet 5); total GT RSV and the total number of Ebola cases per country (Sheet 6). (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3629591_d1.v1
title: Additional file 1: Table S1. of Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea

description: Gene ontology (biological process) of assembled unigenes of newly released nauplii larvae of B. amphitrite. Biological process information was obtained by transferring homologous genes to barnacle contigs using a custom transcript. Table S2. Top 10 gene ontology terms for assembled unigenes of newly released nauplii larvae of B. amphitrite. Selected genes involved in a) larval development, b) signal transduction, c) in response to environment stressors, and d) osmoregulation. Table S3. Gene ontology (molecular function) for assembled unigenes of newly released nauplii larvae of B. amphitrite. Molecular process information was obtained by transferring homologous genes to barnacle contigs using a custom transcript. Table S4. Gene ontology (cellular component) for assembled contigs of newly released nauplii larvae of B. amphitrite. Cellular component information was obtained by transferring homologous genes to barnacle contigs using a custom transcript. (XLSX 57 kb)
DOI: 10.15468/dl.ea2b2b
title: Occurrence Download

description: A dataset listing the 1489 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-74.0755 40.15731,-75.03237 38.78925,-73.64056 39.60662,-74.0755 40.15731))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chordata"
 ]
}

 The dataset's 1489 records were derived from 159 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038048-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3629591_d2.v1
title: Additional file 7: Table S10. of Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea

description: Down-regulated proteins involved in homeostasis and energy metabolism in newly released nauplii larvae of Red Sea B. amphitrite. Hits were based on the number of unique peptides identified, the spectrum count and sequence coverage. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3629579_d7.v1
title: Additional file 5: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

description: DEGs detected with an adjusted p
DOI: 10.6084/m9.figshare.c.3629591_d3.v1
title: Additional file 6: Table S9. of Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea

description: Up-regulated proteins involved in the stress response and osmoregulation in newly released nauplii larvae of Red Sea B. amphitrite. Hits were based on the number of unique peptides identified, the spectrum count and sequence coverage. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3629579_d9.v1
title: Additional file 2: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

description: DEGs detected with absolute FC &gt; 2 and adjusted p
DOI: 10.6084/m9.figshare.c.3629591_d5.v1
title: Additional file 3: Table S6. of Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea

description: Top 30 Pfam domains predicted from the transcriptome of newly released nauplii of B. amphitrite. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3629591_d6.v1
title: Additional file 8: Table S11. of Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea

description: List of differentially expressed proteins involved in cellular metabolism in newly released nauplii larvae of Red Sea B. amphitrite. Hits were based on the number of unique peptides identified, the spectrum count and sequence coverage. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3629579_d10.v1
title: Additional file 9: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

description: List of Arabidopsis -tomato-grapevine orthologous trios. (XLSX 749 kb)
DOI: 10.6084/m9.figshare.c.3629600_d2.v1
title: Additional file 12: Table S3. of IMPACT is a GCN2 inhibitor that limits lifespan in Caenorhabditis elegans

description: qPCR data of Additional file 9: Figure S9. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3629591_d7.v1
title: Additional file 9: Table S12. of Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea

description: Abundance of transcripts categorized to stress response, development, and signaling mechanisms, compared in parallel with protein regulation. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3629591_d8.v1
title: Additional file 2: Table S5. of Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea

description: Top 40 abundant genes identified from the transcriptome of newly released nauplii larvae of B. amphitrite. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3629720_d12.v1
title: Additional file 3: of Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design

description: Raw data for qPCR. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3629798_d1.v1
title: Additional file 2: Table S2. of Virulence genes of Rickettsia rickettsii are differentially modulated by either temperature upshift or blood-feeding in tick midgut and salivary glands

description: Transcriptional level of Rickettsia rickettsii genes in salivary glands of ticks exposed to temperature upshift, blood-feeding or both stimuli simultaneously. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3629720_d13.v1
title: Additional file 19: of Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design

description: Primers, strains, and plasmids used in this study. (XLSX 96 kb)
DOI: 10.6084/m9.figshare.c.3629789_d2.v1
title: Additional file 2: Tables S1-S7. of From yeast to hypha: defining transcriptomic signatures of the morphological switch in the dimorphic fungal pathogen Ophiostoma novo-ulmi

description: Table S1: qRT-PCR primers for reference genes and tested genes. Table S2: Results of BLASTp analysis of Saccharomyces cerevisiae dimorphism related proteins with Ophiostoma novo-ulmi genome. The last column indicates if the homologous proteins are orthologs (results of reciprocal best blast hits (RBH) using tblastx on exon sequences for each gene of the two species, e-value = 1x10^3 and word size = 5). Table S3: Normalized read counts for the 7605 genes analyzed using EdgeR and maSigPro in R. 1-3: 0 h; 4-6: 2 h; 7-9: 4 h; 10-12: 6 h; 13-15: 10 h; 16-18: 27 h. DEGs : Differentially Expressed Genes detected using maSigPro, FDR â ¤ 0.05. For each DEG, the number of the STEM profile associated is indicated. Nigg et al. 2015: genes overexpressed in Yeast or Mycelium growth phases in the study of Nigg and collaborators in 2015 [47]. Table S4: Description of the 815 genes found in the STEM profile 39. Values are means of differential gene expressions for each time compared to 0 h.Table S5: Enriched biological processes in the STEM profile 39 containing at least 4 DEGs genes after filtration using GO Trimming and REVIGO. GO term in bold are parent term retained as name for a regroupment. Table S6: Description of the 256 genes found in the STEM profile 8. Values are means of differential gene expressions for each time compared to 0 h. Table S7: Enriched biological processes in the STEM profile 8 containing at least 4 DEGs genes after filtration using GO Trimming and REVIGO. GO term in bold are parent term retained as name for a regroupment. (XLSX 1029Â kb)
DOI: 10.6084/m9.figshare.c.3629720_d14.v1
title: Additional file 4: of Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design

description: List of gRNAs, their target location, and target strand (template or non-template). (XLSX 81 kb)
DOI: 10.6084/m9.figshare.c.3629798_d2.v1
title: Additional file 3: Table S3. of Virulence genes of Rickettsia rickettsii are differentially modulated by either temperature upshift or blood-feeding in tick midgut and salivary glands

description: Transcriptional level of Rickettsia rickettsii genes in midgut of ticks exposed to temperature upshift, blood-feeding or both stimuli simultaneously. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3629798_d3.v1
title: Additional file 1: Table S1. of Virulence genes of Rickettsia rickettsii are differentially modulated by either temperature upshift or blood-feeding in tick midgut and salivary glands

description: Primers used in RT-qPCR analysis. (XLSX 13 kb)
DOI: 10.5066/p9zrrg3t
title: Fish community and substrate data from tributaries to the Mohawk River (ver. 2.0, January 2024)

description: The dataset is composed of three data tables containing information from electrofishing and pebble count surveys conducted in tributaries to the Mohawk River in central and eastern New York during 2019 and 2023. 20 sites were surveyed in 2019, and 19 of those same sites were resurveyed in 2023. The first table contains information on the sampled reaches, the second table contains fish collection data, and the third table contains pebble count data.
DOI: 10.6084/m9.figshare.c.3629720_d15.v1
title: Additional file 7: of Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design

description: Counts and analysis of three replicates in 20Â ÎźM fluconazole. (XLSX 150 kb)
DOI: 10.6084/m9.figshare.c.3629720_d16.v1
title: Additional file 16: of Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design

description: A range of additional potential determinants of guide effect. (XLSX 2213 kb)
DOI: 10.6084/m9.figshare.c.3629720_d17.v1
title: Additional file 5: of Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design

description: List of sequenced samples, their respective barcodes, and other metadata. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3629720_d18.v1
title: Additional file 12: of Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design

description: Average drug-specific effects for each guide set (gRNAs directed against the same gene). (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3629822_d1.v1
title: Additional file 1: of A randomized controlled trial of vitamin D supplementation on perinatal depression: in Iranian pregnant mothers

description: Dataset supporting the conclusions of this article. (XLSX 31Â kb)
DOI: 10.15468/dl.r3gm54
title: Occurrence Download

description: A dataset containing 90876 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polites Scudder, 1872"
 ]
}

 The dataset includes 90876 records from 164 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038057-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3630062_d2.v1
title: Additional file 2: Table S1. of Protein profile and protein interaction network of Moniliophthora perniciosa basidiospores

description: Basidiospore production and protein yield analyzed. (XLS 48 kb)
DOI: 10.6084/m9.figshare.c.3630068_d2.v1
title: Additional file 1: Table S1. of Genome-wide SNP discovery and population structure analysis in pepper (Capsicum annuum) using genotyping by sequencing

description: List of the Capsicum accessions used for SNP discovery and population structure. Table S2. List of additional non-annuum accessions genotyped through GBS. Table S3. COSII markers used for the identification of the peri-centromeric regions for each of the 12 pepper chromosomes. Table S4. Average SNP density on each chromosome, considering 105,187 SNPs detected for C. annuum. Table S5. Gene diversity, Heterozygosity and PIC evaluated across the 12 pepper chromosomes. Table S6. Distribution of the 222 accessions according to Hierarchical cluster analysis and Bayesian model-based clustering (K=3). Table S7. Clustering of 191 genotypes selected from accessions grouped in cluster I (Fig.Â 2), based on Hierarchical cluster analysis (K=2) and Bayesian model-based clustering (K=3). (XLS 2.14Â mb)
DOI: 10.6084/m9.figshare.c.3630017_d10.v1
title: Additional file 4: of A network based approach to drug repositioning identifies plausible candidates for breast cancer and prostate cancer

description: shows detailed description of identified drug candidates for breast and prostate cancer. (XLSX 140 kb)
DOI: 10.6084/m9.figshare.c.3630017_d11.v1
title: Additional file 13: of A network based approach to drug repositioning identifies plausible candidates for breast cancer and prostate cancer

description: is a table listing predicted drug candidates for breast and prostate cancer using LINCS dataset. (XLSX 1152 kb)
DOI: 10.6084/m9.figshare.28049813
title: Delonix decaryi raw GC-MS files

description: Metabolite extraction from Delonix decaryi seeds
DOI: 10.6084/m9.figshare.28049813.v1
title: Delonix decaryi raw GC-MS files

description: Metabolite extraction from Delonix decaryi seeds
DOI: 10.6084/m9.figshare.c.3630296_d4.v1
title: Additional file 1: Table S1. of Leptin and insulin up-regulate miR-4443 to suppress NCOA1 and TRAF4, and decrease the invasiveness of human colon cancer cells

description: List of primers used. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3630314_d1.v1
title: Additional file 2: of Normative values for musculoskeletal- and neuromotor fitness in apparently healthy Norwegian adults and the association with obesity: a cross-sectional study

description: Availability of data. The available data generated or analyzed for this research article. (XLSX 247Â kb)
DOI: 10.6084/m9.figshare.c.3630326_d1.v1
title: Additional file 6: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Analysis of carbohydrate-binding module (CBM) containing proteins, arranged by CBM family. (XLS 14Â kb)
DOI: 10.6084/m9.figshare.c.3630278_d13.v1
title: Additional file 7: of Genome-wide analysis of WRKY transcription factors in white pear (Pyrus bretschneideri) reveals evolution and patterns under drought stress

description: CDS of PbWRKY genes. (GZ 13907Â kb)
DOI: 10.6084/m9.figshare.c.3630326_d2.v1
title: Additional file 16: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Properties of chitinases retrieved from the genomes of Ab, MAC and MR. The active site position, number of amino acid, molecular weight (MW), presence of signal peptide and domains (CBM, LysM and others in addition to the catalytic domain) have been analyzed for the respective genes in the genome and listed. (XLS 21Â kb)
DOI: 10.6084/m9.figshare.c.3630323_d2.v1
title: Additional file 2: of The NAC transcription factor family in maritime pine (Pinus Pinaster): molecular regulation of two genes involved in stress responses

description: Amino acid sequence logos of 21 motifs identified in PpNAC proteins using MEME. Data shown are the number of proteins containing each motif, the width, the E-value, the domain in which it is located, and the annotation of each motif is indicated. (XLS 379 kb)
DOI: 10.6084/m9.figshare.c.3630326_d3.v1
title: Additional file 15: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Sexuality related genes in Ab, MAC and MR genomes. (XLS 22Â kb)
DOI: 10.6084/m9.figshare.c.3630326_d4.v1
title: Additional file 5: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Major protein families of Ab, MAC and MR genomes implicated in the pathogen-host interactions. (XLS 20Â kb)
DOI: 10.6084/m9.figshare.c.3630338_d1.v1
title: Additional file 1: of The cost of illness attributable to diabetic foot and cost-effectiveness of secondary prevention in Peru

description: Cost estimates of procedures and preventative strategies using the ingredients-based approach (Peru, 2012). (XLS 57 kb)
DOI: 10.6084/m9.figshare.c.3630326_d5.v1
title: Additional file 9: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Carbohydrate-degrading enzymes, arranged by PL family. (XLS 7Â kb)
DOI: 10.6084/m9.figshare.c.3630560_d5.v1
title: Additional file 6: of Deciphering the signaling mechanisms of the plant cell wall degradation machinery in Aspergillus oryzae

description: Threading templates used for multi template modeling of the A. oryzae transcription factors viz., AoXlnR, AoAmyR and AoCreA along with their secondary structure alignments. Structure evaluation scores for modeled transcription factors of the A. oryzae transcription factors viz., AoXlnR, AoAmyR and AoCreA. (XLSX 36Â kb)
DOI: 10.15472/7xuve4
title: Listado de especies de Phlebotominae (Diptera: Psychodidae) de Nariño, Colombia

description: Este recurso presenta el listado de las especies de la subfamilia Phlebotominae (Diptera: Psychodidae) con ocurrencia conocida para el Departamento de Nariño (Colombia). Se listan una tribu, cuatro subtribus, 16 géneros, 13 subgéneros, 43 especies y cinco subespecies. El listado ha sido compilado a partir de información disponible en los principales catálogos del grupo para el país y en literatura reciente. Se incluyen las referencias en donde se documenta el registro para el departamento de Nariño.
DOI: 10.6084/m9.figshare.c.3630524_d7.v1
title: Additional file 4: of Genome-wide analysis of lectin receptor-like kinases in Populus

description: List of G-type PtLecRLKs. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3630587_d1.v1
title: Additional file 1: of Frequency of BRAF V600E mutations in 969 central nervous system neoplasms

description: List of all analyzed tumor samples with the corresponding histopathological diagnosis and age atdiagnosis. (XLS 129 kb)
DOI: 10.6084/m9.figshare.c.3630572_d3.v1
title: Additional file 9: Table S7. of Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans

description: Average BMI by genotype for rs6435678 in MESA and WHI African Americans. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.c.3630560_d6.v1
title: Additional file 1: of Deciphering the signaling mechanisms of the plant cell wall degradation machinery in Aspergillus oryzae

description: Chemical description of the 10 sugar molecules used in the study. (XLSX 36Â kb)