cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27677981
title: The complete chloroplast genome of <i>Erodium stephanianum</i> (Geraniaceae)

description: <i>Erodium stephanianum</i> (<i>Erodium stephanianum</i> Willd. Sp. Pl. 1800) has not had its complete chloroplast genome reported, which limits our understanding of its genetics and evolution. In this study, we assembled and annotated its chloroplast genome, revealing a quadripartite structure with 76 protein-coding genes. Repeat analysis indicated the presence of simple sequence repeats. Phylogenetic analysis confirmed <i>E. stephanianum's</i> placement within the genus Erodium of the Geraniaceae family. These findings offer valuable genomic resources for comparative studies in Erodium and Geraniaceae, aiding genetic diversity and phylogenetic analyses.
DOI: 10.6084/m9.figshare.27677981.v2
title: The complete chloroplast genome of <i>Erodium stephanianum</i> (Geraniaceae)

description: <i>Erodium stephanianum</i> (<i>Erodium stephanianum</i> Willd. Sp. Pl. 1800) has not had its complete chloroplast genome reported, which limits our understanding of its genetics and evolution. In this study, we assembled and annotated its chloroplast genome, revealing a quadripartite structure with 76 protein-coding genes. Repeat analysis indicated the presence of simple sequence repeats. Phylogenetic analysis confirmed <i>E. stephanianum's</i> placement within the genus Erodium of the Geraniaceae family. These findings offer valuable genomic resources for comparative studies in Erodium and Geraniaceae, aiding genetic diversity and phylogenetic analyses.
DOI: 10.6084/m9.figshare.12840050.v3
title: Datasets of NPP, soil radiocarbon and root biomass

description: There are three files and a reference list:
<strong>Supplementary Data 1</strong>: The observed above- and belowground NPP data at the 725 NPP<sub>data</sub> sites (NPP and fBNPP Data.csv).
<strong>Supplementary Data 2</strong>: The depth distribution of root biomass at the 559 Root<sub>data</sub> sites (Root Data.csv).
<strong>Supplementary Data 3</strong>: Estimated C<sub>age</sub> and C<sub>bulk</sub> at the 3,128 measurements at the 750 soil radiocarbon profiles (14C Data.csv).
<strong>Supplementary Data 4</strong>: The 54 studies from which the NPP<sub>data</sub> were derived (Reference_NPP Data.docx).
code.7z: Code to perform the data analysis in R.
<strong>Output products.rar</strong> : Generated digital maps of BNPP.
<br>
DOI: 10.15468/dl.ewv95z
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cipangopaludina Hannibal, 1912",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 142 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046408-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27678993.v1
title: Complete chloroplast genome and phylogenetic analysis of <i>Lonicera microphylla</i> Willd. ex Roem. & Schult. 1819 Caprifoliaceae

description: <i>Lonicera microphylla</i> Willd. ex Roem. & Schult. 1819 is a medicinal plant species, especially for treating chronic fever and dysentery. This study aimed to characterize the chloroplast genome of <i>L. microphylla</i> and reconstruct the phylogenetic relationships among <i>Lonicera</i> Linn. 1753. The circular complete chloroplast genome is 154,945 bp in length, with two inverted repeat regions (IRs; 23,841 bp), separated by a small single-copy region (SSC; 18,789 bp) and a large single-copy region (LSC; 88,474 bp). The overall GC content of <i>L. microphylla</i> plastome was 38.36%. The chloroplast genome encoded a total of 131 genes, including 84 protein-coding genes, 39 tRNA genes, and eight rRNA genes. Phylogenetic analysis reveals that <i>L. microphylla</i> was more closely related to <i>Lonicera tangutica</i> Maxim. 1878. Our result can provide reference for the phylogenetic relationship, resource development, and utilization of <i>Lonicera</i>.
DOI: 10.6084/m9.figshare.27861565
title: The first complete chloroplast genome of <i>Halodule uninervis</i> (Forssk.) Boiss. 1882 (Cymodoceaceae)

description: <i>Halodule uninervis</i> (Forssk.) Boiss. 1882 is a seagrass species. The complete chloroplast genome is 164,005 bp in length, with a GC content of 36.3%. This genome consists of a large single-copy region of 87,522 bp, a small single-copy region of 11,481 bp and a pair of inverse repeat regions of 32,501 bp each. A total of 131 genes were annotated in the genome, including 87 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. Phylogenetic analysis revealed that <i>H. uninervis</i> shares the closest taxonomic relationship with <i>Cymodocea rotundata</i> and <i>Syringodium isoetifolium</i>, and all three species belong to the family Cymodoceaceae.
DOI: 10.6084/m9.figshare.27907316
title: The first complete mitochondrial genome of <i>Loimia arborea</i> (Polychaeta: Terebellidae) and phylogenetic analysis

description: In order to understand the molecular insights within the Terebellida, the complete mitochondrial genome of Loimia arborea was sequenced. The mitochondrial genome is 16,023 bp, with 13 protein-coding genes (PCGs), 23 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and a non-coding region (D-loop). Notably, two adjacent copies of methionine tRNA genes (trnMs) were detected. The phylogeny of Terebellida was constructed based on 13 PCGs from 13 species, two main clades were strongly supported, i.e., Cirratuliformia (clade A) and Terebelliformia (clade B). And the monophyly of the Terebellidae was restored.
DOI: 10.6084/m9.figshare.27907316.v1
title: The first complete mitochondrial genome of <i>Loimia arborea</i> (Polychaeta: Terebellidae) and phylogenetic analysis

description: In order to understand the molecular insights within the Terebellida, the complete mitochondrial genome of Loimia arborea was sequenced. The mitochondrial genome is 16,023 bp, with 13 protein-coding genes (PCGs), 23 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and a non-coding region (D-loop). Notably, two adjacent copies of methionine tRNA genes (trnMs) were detected. The phylogeny of Terebellida was constructed based on 13 PCGs from 13 species, two main clades were strongly supported, i.e., Cirratuliformia (clade A) and Terebelliformia (clade B). And the monophyly of the Terebellidae was restored.
DOI: 10.6084/m9.figshare.27458372.v1
title: The first complete mitochondrial genome of <i>Mylabris sibirica</i> (Coleoptera: Meloidae) and its phylogenetic analysis

description: The complete mitochondrial genome of <i>Mylabris sibirica</i> Fischer von Waldheim, 1823 was sequenced and characterized. The mitogenome is 15,794 bp long with 37 annotated genes, comprising 13 protein-coding genes, 22 transfer RNA genes, and two ribosomal RNA genes. The phylogenetic analysis based on the mitochondrial genome sequences revealed that <i>M. sibirica</i> clustered with <i>M. quadripunctata</i>. This study presents the complete mitochondrial genome of <i>M. sibirica</i> for the first time, which could be beneficial for systematic studies on Mylabrini.
DOI: 10.6084/m9.figshare.27677981.v1
title: The complete chloroplast genome of <i>Erodium stephanianum</i> (Geraniaceae)

description: <i>Erodium stephanianum</i> (<i>Erodium stephanianum</i> Willd. Sp. Pl. 1800) has not had its complete chloroplast genome reported, which limits our understanding of its genetics and evolution. In this study, we assembled and annotated its chloroplast genome, revealing a quadripartite structure with 76 protein-coding genes. Repeat analysis indicated the presence of simple sequence repeats. Phylogenetic analysis confirmed <i>E. stephanianum's</i> placement within the genus Erodium of the Geraniaceae family. These findings offer valuable genomic resources for comparative studies in Erodium and Geraniaceae, aiding genetic diversity and phylogenetic analyses.
DOI: 10.6084/m9.figshare.27852664
title: The complete plastome of a newly described species, <i>Iris cangshanensis</i>

description: <i>Iris cangshanensis</i> X. F Jiang, Y. Yang, J. F Liu & Y. P Xie, 2024, is a newly described perennial herb with a small population size. This study utilized Illumina sequencing technology to construct the complete chloroplast genome of <i>Iris cangshanensis</i>. The chloroplast genome is 154,008 base pairs (bp) in size with 37.32% overall GC content, consisting of an 83,559 bp (35.35%) large single-copy region (LSC), a 17,937 bp (30.56%) small single-copy region (SSC), and a pair of 26,256 bp (42.78%) inverted repeat (IR) sequences. The chloroplast genome has 130 genes, including 84 protein-coding genes, 38 tRNA genes, and eight rRNA genes. A maximum-likelihood (ML) phylogenetic analysis based on the plastomes of 15 Iridaceae species revealed that <i>Iris cangshanensis</i> is closely related to the other 12 species within the <i>Iris</i> genus. Owing to the limited chloroplast genome sampling of the genus <i>Iris</i> in the present study, determining the position of <i>Iris cangshanensis</i> in this genus is difficult. Overall, the chloroplast genome reported in this study will be useful for further taxonomic and evolutionary studies of <i>Iris</i>. This study constructs the complete chloroplast genome of <i>Iris cangshanensis</i>. The chloroplast genome is 154,008 base pairs (bp) in size with 37.32% overall GC content, consisting of an 83,559 bp (35.35%) large single-copy region (LSC), a 17,937 bp (30.56%) small single-copy region (SSC), and a pair of 26,256 bp (42.78%) inverted repeat (IR) sequences. The chloroplast genome has 130 genes, including 84 protein-coding genes, 38 tRNA genes, and eight rRNA genes. A maximum-likelihood (ML) phylogenetic analysis based on 15 Iridaceae species revealed that <i>Iris cangshanensis</i> is closely related to the species within the <i>Iris</i> genus.
DOI: 10.6084/m9.figshare.27861565.v1
title: The first complete chloroplast genome of <i>Halodule uninervis</i> (Forssk.) Boiss. 1882 (Cymodoceaceae)

description: <i>Halodule uninervis</i> (Forssk.) Boiss. 1882 is a seagrass species. The complete chloroplast genome is 164,005 bp in length, with a GC content of 36.3%. This genome consists of a large single-copy region of 87,522 bp, a small single-copy region of 11,481 bp and a pair of inverse repeat regions of 32,501 bp each. A total of 131 genes were annotated in the genome, including 87 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. Phylogenetic analysis revealed that <i>H. uninervis</i> shares the closest taxonomic relationship with <i>Cymodocea rotundata</i> and <i>Syringodium isoetifolium</i>, and all three species belong to the family Cymodoceaceae.
DOI: 10.6084/m9.figshare.27678993
title: Complete chloroplast genome and phylogenetic analysis of <i>Lonicera microphylla</i> Willd. ex Roem. & Schult. 1819 Caprifoliaceae

description: <i>Lonicera microphylla</i> Willd. ex Roem. & Schult. 1819 is a medicinal plant species, especially for treating chronic fever and dysentery. This study aimed to characterize the chloroplast genome of <i>L. microphylla</i> and reconstruct the phylogenetic relationships among <i>Lonicera</i> Linn. 1753. The circular complete chloroplast genome is 154,945 bp in length, with two inverted repeat regions (IRs; 23,841 bp), separated by a small single-copy region (SSC; 18,789 bp) and a large single-copy region (LSC; 88,474 bp). The overall GC content of <i>L. microphylla</i> plastome was 38.36%. The chloroplast genome encoded a total of 131 genes, including 84 protein-coding genes, 39 tRNA genes, and eight rRNA genes. Phylogenetic analysis reveals that <i>L. microphylla</i> was more closely related to <i>Lonicera tangutica</i> Maxim. 1878. Our result can provide reference for the phylogenetic relationship, resource development, and utilization of <i>Lonicera</i>.
DOI: 10.6084/m9.figshare.27852664.v1
title: The complete plastome of a newly described species, <i>Iris cangshanensis</i>

description: <i>Iris cangshanensis</i> X. F Jiang, Y. Yang, J. F Liu & Y. P Xie, 2024, is a newly described perennial herb with a small population size. This study utilized Illumina sequencing technology to construct the complete chloroplast genome of <i>Iris cangshanensis</i>. The chloroplast genome is 154,008 base pairs (bp) in size with 37.32% overall GC content, consisting of an 83,559 bp (35.35%) large single-copy region (LSC), a 17,937 bp (30.56%) small single-copy region (SSC), and a pair of 26,256 bp (42.78%) inverted repeat (IR) sequences. The chloroplast genome has 130 genes, including 84 protein-coding genes, 38 tRNA genes, and eight rRNA genes. A maximum-likelihood (ML) phylogenetic analysis based on the plastomes of 15 Iridaceae species revealed that <i>Iris cangshanensis</i> is closely related to the other 12 species within the <i>Iris</i> genus. Owing to the limited chloroplast genome sampling of the genus <i>Iris</i> in the present study, determining the position of <i>Iris cangshanensis</i> in this genus is difficult. Overall, the chloroplast genome reported in this study will be useful for further taxonomic and evolutionary studies of <i>Iris</i>. This study constructs the complete chloroplast genome of <i>Iris cangshanensis</i>. The chloroplast genome is 154,008 base pairs (bp) in size with 37.32% overall GC content, consisting of an 83,559 bp (35.35%) large single-copy region (LSC), a 17,937 bp (30.56%) small single-copy region (SSC), and a pair of 26,256 bp (42.78%) inverted repeat (IR) sequences. The chloroplast genome has 130 genes, including 84 protein-coding genes, 38 tRNA genes, and eight rRNA genes. A maximum-likelihood (ML) phylogenetic analysis based on 15 Iridaceae species revealed that <i>Iris cangshanensis</i> is closely related to the species within the <i>Iris</i> genus.
DOI: 10.6084/m9.figshare.27458372
title: The first complete mitochondrial genome of <i>Mylabris sibirica</i> (Coleoptera: Meloidae) and its phylogenetic analysis

description: The complete mitochondrial genome of <i>Mylabris sibirica</i> Fischer von Waldheim, 1823 was sequenced and characterized. The mitogenome is 15,794 bp long with 37 annotated genes, comprising 13 protein-coding genes, 22 transfer RNA genes, and two ribosomal RNA genes. The phylogenetic analysis based on the mitochondrial genome sequences revealed that <i>M. sibirica</i> clustered with <i>M. quadripunctata</i>. This study presents the complete mitochondrial genome of <i>M. sibirica</i> for the first time, which could be beneficial for systematic studies on Mylabrini.
DOI: 10.15468/dl.5bq3ra
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cipangopaludina Hannibal, 1912",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 142 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046410-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cr2ewt
title: Occurrence Download

description: A dataset containing 1314 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Semisulcospira O.Boettger, 1886",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1314 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046411-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13825235
title: Context-dependent effects of grassland degradation on soil nitrogen cycling processes

description: We reported results from a standardized field survey, in which we adopted a unique sampling protocol from 45 grassland degradation sequences across 15 study sites on the Tibetan Plateau, and measured soil available N contents and co-occurring N transformation processes.
DOI: 10.5281/zenodo.13825236
title: Context-dependent effects of grassland degradation on soil nitrogen cycling processes

description: We reported results from a standardized field survey, in which we adopted a unique sampling protocol from 45 grassland degradation sequences across 15 study sites on the Tibetan Plateau, and measured soil available N contents and co-occurring N transformation processes.
DOI: 10.15468/dl.2rwsst
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acipenseriformes",
 "Country is Japan",
 "Year is 1854,2023",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046412-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26411125.v2
title: Lake Kasumigaura circulation model 2020

description: SUNTANS model case used for Masunaga et al. (2024) submitted to Water Resource Research. The data set includes all forcing/input files used in the model.
DOI: 10.15468/dl.u268y9
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Senecio L.",
 "Year 1963-2024"
 ]
}

 The dataset includes 122 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046414-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28080686
title: Credit Risk Data

description: This data set is SCOPUS data on existing credit risk research used to write a systematic literature review.
DOI: 10.15468/dl.qpbka5
title: Occurrence Download

description: A dataset containing 242708 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phascolarctos cinereus (Goldfuss, 1817)"
 ]
}

 The dataset includes 242708 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046409-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28080743
title: Supplementary Data Scoring sheet

description: Supplementary Data scoring Sheet
DOI: 10.6084/m9.figshare.28080743.v1
title: Supplementary Data Scoring sheet

description: Supplementary Data scoring Sheet
DOI: 10.15468/dl.2mfwzm
title: Occurrence Download

description: A dataset containing 5873 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spheniscus humboldti Meyen, 1834"
 ]
}

 The dataset includes 5873 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0199756-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9h2ipi
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Limnophyton fluitans Graebn."
 ]
}

 The dataset includes 38 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037507-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.67j3jg
title: Occurrence Download

description: A dataset containing 539 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Vanellus superciliosus (Reichenow, 1886)"
 ]
}

 The dataset includes 539 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003322-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wqxn2b
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-81.95251 33.45894,-82.18323 33.77915,-82.47986 33.91601,-82.65564 34.08906,-82.82043 34.27084,-82.90833 34.42504,-84.01794 34.16182,-83.68835 32.75956,-82.86438 32.99945,-81.95251 33.45894))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Schizachyrium scoparium (Michx.) Nash"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0222998-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xihm5d
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Stomatanthes polycephalus (Schu Itz-Bip. ex B.L.Rob.) H.Rob.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 22 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037510-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfdpv6
title: Occurrence Download

description: A dataset containing 2342 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Elaenia fallax P.L.Sclater, 1861"
 ]
}

 The dataset includes 2342 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059633-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uc6ym8
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Facelis plumosa (Wedd.) Sch.Bip."
 ]
}

 The dataset includes 15 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097567-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yiepe4
title: Occurrence Download

description: A dataset containing 570 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Gymnopleurus sturmi MacLeay, 1821",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 570 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037511-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ma6p7e
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Philemon novaeguineae (S.Müller, 1842)"
 ]
}

 The dataset includes 164 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059605-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.