cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc270dvj
title: CCDC 2055977: Experimental Crystal Structure Determination

description: Related Article: Shuang Yu, Kai Yue Zhang, Jin Xiao Li, Yao Xiao, Li Xian Sun, Feng Ying Bai, Yong Heng Xing|2021|Inorg.Chem.|60|7887|doi:10.1021/acs.inorgchem.1c00408
DOI: 10.5517/ccdc.csd.cc270dsg
title: CCDC 2055975: Experimental Crystal Structure Determination

description: Related Article: Shuang Yu, Kai Yue Zhang, Jin Xiao Li, Yao Xiao, Li Xian Sun, Feng Ying Bai, Yong Heng Xing|2021|Inorg.Chem.|60|7887|doi:10.1021/acs.inorgchem.1c00408
DOI: 10.5517/ccdc.csd.cc267flh
title: CCDC 2032936: Experimental Crystal Structure Determination

description: Related Article: Matteo Briganti, Eva Lucaccini, Laura Chelazzi, Samuele Ciattini, Lorenzo Sorace, Roberta Sessoli, Federico Totti, Mauro Perfetti|2021|J.Am.Chem.Soc.|143|8108|doi:10.1021/jacs.1c02502
DOI: 10.5517/ccdc.csd.cc27hxk7
title: CCDC 2070879: Experimental Crystal Structure Determination

description: Related Article: Matteo Briganti, Eva Lucaccini, Laura Chelazzi, Samuele Ciattini, Lorenzo Sorace, Roberta Sessoli, Federico Totti, Mauro Perfetti|2021|J.Am.Chem.Soc.|143|8108|doi:10.1021/jacs.1c02502
DOI: 10.5517/ccdc.csd.cc270dth
title: CCDC 2055976: Experimental Crystal Structure Determination

description: Related Article: Shuang Yu, Kai Yue Zhang, Jin Xiao Li, Yao Xiao, Li Xian Sun, Feng Ying Bai, Yong Heng Xing|2021|Inorg.Chem.|60|7887|doi:10.1021/acs.inorgchem.1c00408
DOI: 10.5517/ccdc.csd.cc267fjf
title: CCDC 2032934: Experimental Crystal Structure Determination

description: Related Article: Matteo Briganti, Eva Lucaccini, Laura Chelazzi, Samuele Ciattini, Lorenzo Sorace, Roberta Sessoli, Federico Totti, Mauro Perfetti|2021|J.Am.Chem.Soc.|143|8108|doi:10.1021/jacs.1c02502
DOI: 10.5517/ccdc.csd.cc267ffb
title: CCDC 2032931: Experimental Crystal Structure Determination

description: Related Article: Matteo Briganti, Eva Lucaccini, Laura Chelazzi, Samuele Ciattini, Lorenzo Sorace, Roberta Sessoli, Federico Totti, Mauro Perfetti|2021|J.Am.Chem.Soc.|143|8108|doi:10.1021/jacs.1c02502
DOI: 10.5517/ccdc.csd.cc267fmj
title: CCDC 2032937: Experimental Crystal Structure Determination

description: Related Article: Matteo Briganti, Eva Lucaccini, Laura Chelazzi, Samuele Ciattini, Lorenzo Sorace, Roberta Sessoli, Federico Totti, Mauro Perfetti|2021|J.Am.Chem.Soc.|143|8108|doi:10.1021/jacs.1c02502
DOI: 10.5066/p9aem0wv
title: World Assessment Unit Geological Characterizations, 2000 World Petroleum Assessment

description: This shapfile includes arcs and polygons that describe U.S. Geological Survey defined petroleum resource Assessment Units of the World. Each assessment unit is defined as a mappable volume of rock within a total petroleum system that encompasses fields (discovered and undiscovered) that share similar geologic traits and socio-economic factors. The fields inside an assessment are a sufficiently homogenous population that a single methodology of resource assessment is applicable. Assessment units are described by U.S. Geological Survey research scientists on the basis of available geologic knowledge, exploration and production histories, and extensive literature searches. Assessment units are identified with a numeric code derived from the numeric code of the World Geologic Provinces defined by the U.S. Geological Survey World Petroleum Assessment 2000. Most assessment units are contained within a single geologic province, but there are numerous cases where units span more than one province. Summary results of the assessment are presented as attributes of this shapefile.
DOI: 10.5281/zenodo.4911578
title: Identification, Mapping and Relative Quantitation of SARS-CoV-2 Spike Glycopeptides by Mass-Retention Time Fingerprinting

description: We describe an analytical method for the identification, mapping and relative quantitation of glycopeptides from SARS-CoV-2 Spike protein. The method may be executed using a LC-TOF mass spectrometer, requires no specialized knowledge of glycan analysis and exploits the differential resolving power of reverse phase HPLC. While this separation technique resolves peptides with high efficiency, glycans are resolved poorly, if at all. Consequently, glycopeptides consisting of the same peptide bearing different glycan structures will all possess very similar retention times and co-elute. Rather than a disadvantage, we show that shared retention time can be used to map multiple glycan species to the same peptide and location. In combination with MSMS and pseudo MS3, we have constructed a detailed mass-retention time database for Spike glycopeptides. This database allows any accurate mass LC-MS laboratory to reliably identify and quantify Spike glycopeptides from a single overnight elastase digest in less than 90 minutes.
description: This upload consists of raw LC-MS and LC-MSMS data to accompany this paper and the Mass Retention Time Database it refers to. This project has received funding from the Innovative Medicines Initiative 2 Joint Undertaking (JU) under grant agreement No 875510. The JU receives support from the European Union's Horizon 2020 research and innovation programme and EFPIA and Ontario Institute for Cancer Research, Royal Institution for the Advancement of Learning McGill University, Kungliga Tekniska Hoegskolan, Diamond Light Source Limited. The CMD receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada througµgh Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome [106169/ZZ14/Z].
DOI: 10.5281/zenodo.4911577
title: Identification, Mapping and Relative Quantitation of SARS-CoV-2 Spike Glycopeptides by Mass-Retention Time Fingerprinting

description: We describe an analytical method for the identification, mapping and relative quantitation of glycopeptides from SARS-CoV-2 Spike protein. The method may be executed using a LC-TOF mass spectrometer, requires no specialized knowledge of glycan analysis and exploits the differential resolving power of reverse phase HPLC. While this separation technique resolves peptides with high efficiency, glycans are resolved poorly, if at all. Consequently, glycopeptides consisting of the same peptide bearing different glycan structures will all possess very similar retention times and co-elute. Rather than a disadvantage, we show that shared retention time can be used to map multiple glycan species to the same peptide and location. In combination with MSMS and pseudo MS3, we have constructed a detailed mass-retention time database for Spike glycopeptides. This database allows any accurate mass LC-MS laboratory to reliably identify and quantify Spike glycopeptides from a single overnight elastase digest in less than 90 minutes.
description: This upload consists of raw LC-MS and LC-MSMS data to accompany this paper and the Mass Retention Time Database it refers to. This project has received funding from the Innovative Medicines Initiative 2 Joint Undertaking (JU) under grant agreement No 875510. The JU receives support from the European Union's Horizon 2020 research and innovation programme and EFPIA and Ontario Institute for Cancer Research, Royal Institution for the Advancement of Learning McGill University, Kungliga Tekniska Hoegskolan, Diamond Light Source Limited. The CMD receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada througµgh Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome [106169/ZZ14/Z].
DOI: 10.5281/zenodo.4911448
title: Supplementary materials for "The sound of gender – correlations of name phonology and gender across languages", published in Linguistics

description: Supplementary materials for the article on " The sound of gender – correlations of name phonology and gender across languages", published in Linguistics
DOI: 10.5281/zenodo.4911447
title: Supplementary materials for "The sound of gender – correlations of name phonology and gender across languages", published in Linguistics

description: Supplementary materials for the article on " The sound of gender – correlations of name phonology and gender across languages", published in Linguistics
DOI: 10.5519/qd.jy38pa5b
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (191 records)
DOI: 10.5281/zenodo.4572900
title: Track dataset of four regional varieties of South Asian monsoon low-pressure systems

description: This dataset contains tracks and intensities of four regional varieties of South Asian monsoon low-pressure systems (LPSs), as identified in ERA-Interim reanalysis dataset. A feature-tracking algorithm (Hunt et al., 2016; 2018), which is based on identifying and linking track points featuring 850 hPa relative vorticity maximum, is used to identify LPSs. A <em>k</em>-means clustering technique is then used to group LPSs into four LPS varieties (Hunt and Fletcher, 2019). Only those LPSs, which had their genesis during June–September 1979–2018 are retained in this dataset. LPSs in this dataset include monsoon low-pressure areas, depressions and deep depressions. The temporal resolution of ERA-Interim is six-hourly. A full description of four regional LPS varieties can be found here: https://doi.org/10.1002/wea.3997 <strong>Files</strong> <strong>arabian.csv</strong>: contains track details of LPSs occurring over the Arabian Sea <strong>bob_long.csv</strong>: contains track details of long-lived LPSs that propagate over India after their genesis over the head of the Bay of Bengal and nearby coastal regions <strong>bob_short.csv</strong>: contains track details of short-lived LPSs that propagate over India after their genesis over the head of the Bay of Bengal and nearby coastal regions <strong>srilankan.csv</strong>: contains track details of LPSs occurring over Sri Lanka and adjoining parts of the Bay of Bengal <strong>Columns:</strong> <strong>time</strong>: a time stamp showing when an LPS was present <strong>lon</strong>: the longitude of an LPS at a given time step <strong>lat</strong>: the latitude of an LPS at a given time step <strong>candidate_id</strong>: a random identity number for each LPS <strong>vort</strong>: the 850 hPa relative vorticity at the centre of an LPS at a given time step <em>For further details, contact Dr Kieran M. R. Hunt (k.m.r.hunt@reading.ac.uk) or Akshay Deoras (deorasakshay@gmail.com). </em>
description: {"references": ["Hunt, K.M., Turner, A.G., Inness, P.M., Parker, D.E. and Levine, R.C., 2016. On the structure and dynamics of Indian monsoon depressions. Monthly Weather Review, 144(9). https://doi.org/10.1175/MWR-D-15-0138.1", "Hunt, K.M., Turner, A.G. and Shaffrey, L.C., 2018. The evolution, seasonality and impacts of western disturbances. Quarterly Journal of the Royal Meteorological Society, 144(710). https://doi.org/10.1002/qj.3200", "Hunt, K.M. and Fletcher, J.K., 2019. The relationship between Indian monsoon rainfall and low-pressure systems. Climate Dynamics, 53(3). https://doi.org/10.1007/s00382-019-04744-x", "The four varieties of South Asian monsoon low-pressure systems and their modulation by tropical intraseasonal variability. A. Deoras, K. M. R. Hunt and A. G. Turner. Weather, in review."]}
DOI: 10.5281/zenodo.4572899
title: Track dataset of four regional varieties of South Asian monsoon low-pressure systems

description: This dataset contains tracks and intensities of four regional varieties of South Asian monsoon low-pressure systems (LPSs), as identified in ERA-Interim reanalysis dataset. A feature-tracking algorithm (Hunt et al., 2016; 2018), which is based on identifying and linking track points featuring 850 hPa relative vorticity maximum, is used to identify LPSs. A <em>k</em>-means clustering technique is then used to group LPSs into four LPS varieties (Hunt and Fletcher, 2019). Only those LPSs, which had their genesis during June–September 1979–2018 are retained in this dataset. LPSs in this dataset include monsoon low-pressure areas, depressions and deep depressions. The temporal resolution of ERA-Interim is six-hourly. A full description of four regional LPS varieties can be found here: https://doi.org/10.1002/wea.3997 <strong>Files</strong> <strong>arabian.csv</strong>: contains track details of LPSs occurring over the Arabian Sea <strong>bob_long.csv</strong>: contains track details of long-lived LPSs that propagate over India after their genesis over the head of the Bay of Bengal and nearby coastal regions <strong>bob_short.csv</strong>: contains track details of short-lived LPSs that propagate over India after their genesis over the head of the Bay of Bengal and nearby coastal regions <strong>srilankan.csv</strong>: contains track details of LPSs occurring over Sri Lanka and adjoining parts of the Bay of Bengal <strong>Columns:</strong> <strong>time</strong>: a time stamp showing when an LPS was present <strong>lon</strong>: the longitude of an LPS at a given time step <strong>lat</strong>: the latitude of an LPS at a given time step <strong>candidate_id</strong>: a random identity number for each LPS <strong>vort</strong>: the 850 hPa relative vorticity at the centre of an LPS at a given time step <em>For further details, contact Dr Kieran M. R. Hunt (k.m.r.hunt@reading.ac.uk) or Akshay Deoras (deorasakshay@gmail.com). </em>
description: {"references": ["Hunt, K.M., Turner, A.G., Inness, P.M., Parker, D.E. and Levine, R.C., 2016. On the structure and dynamics of Indian monsoon depressions. Monthly Weather Review, 144(9). https://doi.org/10.1175/MWR-D-15-0138.1", "Hunt, K.M., Turner, A.G. and Shaffrey, L.C., 2018. The evolution, seasonality and impacts of western disturbances. Quarterly Journal of the Royal Meteorological Society, 144(710). https://doi.org/10.1002/qj.3200", "Hunt, K.M. and Fletcher, J.K., 2019. The relationship between Indian monsoon rainfall and low-pressure systems. Climate Dynamics, 53(3). https://doi.org/10.1007/s00382-019-04744-x", "The four varieties of South Asian monsoon low-pressure systems and their modulation by tropical intraseasonal variability. A. Deoras, K. M. R. Hunt and A. G. Turner. Weather, in review."]}
DOI: 10.5519/qd.pitjrzob
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (676 records)
DOI: 10.6084/m9.figshare.14721282.v7
title: THINGS-EEG

description: EEG data for 1854 object concepts presented in RSVP streams. Data from 50 participants.
DOI: 10.5281/zenodo.4914811
title: ER-Apex2 Mass Spectrometry Protein Identification Dataset

description: HeLa cells were transfected with ER-APEX2. The next day, the labeling protocol detailed in Hung, Victoria et al. <em>Nature protocols</em> vol. 11,3 (2016): 456-75. by incubating the cells with 500 uM biotin-phenol for 30 minutes before being treated with a final concentration of 1 mM hydrogen peroxide. A quenching buffer was used to stop the reaction after 1 minute. The cells were then lysed in BioID buffer and the lysate was used for an immunoprecipitation with streptavidin beads. An SDS page gel was run with the resulting elution sample. The gel was stained with Coomassie blue. The appropriate lane was excised and submitted for mass spectrometry analysis. The mass spectrometry analysis was performed by the Mass Spectrometry (MS) & Proteomics Resource of the W.M. Keck Foundation Biotechnology Resource Laboratory located at the Yale School of Medicine. Details of the mass spectrometry analysis parameters are in the excel file "ER-Apex2 MassSpectrometryData."
DOI: 10.5281/zenodo.4721622
title: ER-Apex2 Mass Spectrometry Protein Identification Dataset

description: HeLa cells were transfected with ER-APEX2. The next day, the labeling protocol detailed in Hung, Victoria et al. <em>Nature protocols</em> vol. 11,3 (2016): 456-75. by incubating the cells with 500 uM biotin-phenol for 30 minutes before being treated with a final concentration of 1 mM hydrogen peroxide. A quenching buffer was used to stop the reaction after 1 minute. The cells were then lysed in BioID buffer and the lysate was used for an immunoprecipitation with streptavidin beads. An SDS page gel was run with the resulting elution sample. The gel was stained with Coomassie blue. The appropriate lane was excised and submitted for mass spectrometry analysis. The mass spectrometry analysis was performed by the Mass Spectrometry (MS) & Proteomics Resource of the W.M. Keck Foundation Biotechnology Resource Laboratory located at the Yale School of Medicine. Details of the mass spectrometry analysis parameters are in the excel file "ER-Apex2 MassSpectrometryData."
DOI: 10.5281/zenodo.4907440
title: Effect of a whole feather diet on the growth and survivability of the Black Carpet Beetle for waste stream transformation to insect protein

description: Keratin waste has become a significant side effect of meat production and processing that needs urgent addressing. This study was to explore the potential of Black Carpet Beetle as one of the few species known to metabolize feather keratin. Rearing larvae on raw feathers revealed no significant differences in overall survivability and number of larval molts compared with the control diet, though growth was stunted. At the end of the study, up to 42% of the original feather mass was consumed by the larvae, with approximate digestibility varying between 68-89%. Gut enzyme analysis confirmed keratinolytic activity in the larval digestive tract. Furthermore, protein content in larvae reared on a feather diet surpassed control-fed larvae in overall protein content (.790 mg/mL vs .628mg/mL per 1 mg of live larval weight). Our study demonstrated the Black Carpet Beetle as a promising biological fermenter for sustainably converting feather protein into insect protein.
DOI: 10.5281/zenodo.4907439
title: Effect of a whole feather diet on the growth and survivability of the Black Carpet Beetle for waste stream transformation to insect protein

description: Keratin waste has become a significant side effect of meat production and processing that needs urgent addressing. This study was to explore the potential of Black Carpet Beetle as one of the few species known to metabolize feather keratin. Rearing larvae on raw feathers revealed no significant differences in overall survivability and number of larval molts compared with the control diet, though growth was stunted. At the end of the study, up to 42% of the original feather mass was consumed by the larvae, with approximate digestibility varying between 68-89%. Gut enzyme analysis confirmed keratinolytic activity in the larval digestive tract. Furthermore, protein content in larvae reared on a feather diet surpassed control-fed larvae in overall protein content (.790 mg/mL vs .628mg/mL per 1 mg of live larval weight). Our study demonstrated the Black Carpet Beetle as a promising biological fermenter for sustainably converting feather protein into insect protein.
DOI: 10.6073/pasta/48b8bcbc808a6f77ddaa72ee3fcd78d6
title: Interagency Ecological Program: Over four decades of juvenile fish monitoring data from the San Francisco Estuary, collected by the Delta Juvenile Fish Monitoring Program, 1976-2020

description: The United States Fish and Wildlife Service Delta Juvenile Fish Monitoring Program (DJFMP) has monitored juvenile Chinook Salmon Oncorhynchus tshawytscha and other fish species within the San Francisco Estuary (Estuary) since 1976 using a combination of surface trawls and beach seines. Since 2000, three trawl sites and 58 beach seine sites have been sampled weekly or biweekly within the Estuary and lower Sacramento and San Joaquin Rivers. As part of the Interagency Ecological Program (IEP) that manages the Estuary, the DJFMP has tracked the relative abundance and distribution of naturally and hatchery produced juvenile Chinook Salmon of all races as they outmigrate through the Sacramento-San Joaquin Delta for over four decades. The data that DJFMP collected has been used not only to help inform the management of Chinook Salmon, but also to monitor the status of native species of interest such as the previously listed Sacramento Splittail Pogonichthys macrolepidotus and invasive species such as Mississippi Silverside Menidia beryllina and Largemouth Bass Micropterus salmoides. For more information: https://www.fws.gov/lodi/juvenile_fish_monitoring_program/jfmp_index.htm
DOI: 10.5281/zenodo.4521262
title: Cross-Node Federated Graph Neural Network for Spatio-Temporal Data Modeling

description: Dataset and code for "Cross-Node Federated Graph Neural Network for Spatio-Temporal Data Modeling".
DOI: 10.5281/zenodo.4521261
title: Cross-Node Federated Graph Neural Network for Spatio-Temporal Data Modeling

description: Dataset and code for "Cross-Node Federated Graph Neural Network for Spatio-Temporal Data Modeling".
DOI: 10.6084/m9.figshare.14721282.v8
title: THINGS-EEG

description: EEG data for 1854 object concepts presented in RSVP streams. Data from 50 participants.
DOI: 10.5281/zenodo.4914788
title: Extension of the area surveyed with the multibeam system in the Ria de Aveiro, Portugal, onboard the NEREIDE research vessel.

description: A Kongsberg EM 2040 C multibeam echo sounder transducer installed on the scientific vessel NEREIDE, was used to collect multibeam bathymetry data during graduation activities. This particular dataset was collected around the Ria de Aveiro, Portugal during January, 2021. The range of opening angles of the EM 2040 C multibeam varies between 60 and 65 degrees. The positioning system used was supported by the Real Time Kinematic (RTK) technique with the transmission of differential data in Ultra High Frequency (UHF) mode. The data is calibrated and corrected for the surface sound velocity. The processing of hydrographic data was performed using specific algorithms for hydrography - Combined Uncertainty and Bathymetric Estimator (CUBE). In its processing, data was referenced to the hydrographic Zero of Portugal and projected in the ETRS89-PTTM08 coordinate system.
description: If you want a GEOTIFF of the surface or if you need other data or information, please contact rcavalinhos@ua.pt
DOI: 10.5281/zenodo.4914787
title: Extension of the area surveyed with the multibeam system in the Ria de Aveiro, Portugal, onboard the NEREIDE research vessel.

description: A Kongsberg EM 2040 C multibeam echo sounder transducer installed on the scientific vessel NEREIDE, was used to collect multibeam bathymetry data during graduation activities. This particular dataset was collected around the Ria de Aveiro, Portugal during January, 2021. The range of opening angles of the EM 2040 C multibeam varies between 60 and 65 degrees. The positioning system used was supported by the Real Time Kinematic (RTK) technique with the transmission of differential data in Ultra High Frequency (UHF) mode. The data is calibrated and corrected for the surface sound velocity. The processing of hydrographic data was performed using specific algorithms for hydrography - Combined Uncertainty and Bathymetric Estimator (CUBE). In its processing, data was referenced to the hydrographic Zero of Portugal and projected in the ETRS89-PTTM08 coordinate system.
description: If you want a GEOTIFF of the surface or if you need other data or information, please contact rcavalinhos@ua.pt
DOI: 10.6084/m9.figshare.14751522
title: Phalloidin Staining of Latrunculin A and Jasplakinolide-Treated Cells

description: False-colored fluorescence micrographs of cells (U2OS or BJ fibroblast expressing hTERT and Cas9) phalloidin and hoechst stained. Cells were incubated in the indicated concentration of Latrunculin A (LatA) for 60 min or jasplakinolide (jasp) for 120 min in media and fixed and stained. Incubation in 0.1% DMSO in cell media was conducted for the same duration for controls.