cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5708513
title: msd-errors - Data for diffusion coefficient and offset figures

description: Data for a figure that shows the distributions of the mean and varance of the diffusion coefficient and offset that are found from the analysis of 1024 unique random walks using kinisi. This is performed for both a truely random walk and a temporally anti-correlated random walk.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.6084/m9.figshare.17033411
title: An easy-to-implement risk score for targeted hepatitis C testing in the general population

description: Dataset in STATA format
DOI: 10.6084/m9.figshare.17033411.v1
title: An easy-to-implement risk score for targeted hepatitis C testing in the general population

description: Dataset in STATA format
DOI: 10.5281/zenodo.5708515
title: Morphological identification and molecular characterization of economically important ticks (Acari: Ixodidae) from North and North–western Egypt

description: For the sake of total evidence of ticks invading North and North–west parts of Egypt, light microscopy, scanning electron microscopy (SEM) and DNA sequencing of mitochondrial 16S ribosomal DNA (rDNA) and nuclear second internal transcribed spacer (ITS2) were performed. Morphological and molecular analysis confirmed the presence and well–distribution of <em>Rhipicephalus</em> <em>sanguineus</em> s.l., <em>Rhipicephalus</em> (<em>Boophilus</em>) <em>annulatus</em>, and <em>Hyalomma</em> <em>dromedarii</em> infesting dogs and sheep (Alexandria governorate), cattle (Beheira governorate), and camels (Marsa Matruh governorate) of North/North–western parts of Egypt. 16S rDNA and ITS2 sequences of the ticks were amplified using universal and gene–specific sets of primers, sequenced and analyzed. Lengths of amplified 16S rDNA sequences in all examined tick species were found to be similar in size (460 bp); however, they differed in base pair constitutions, whereas ITS2 lengths were 1,500 bp, 1,550 bp, and 1,800 bp for <em>Rh.</em> (<em>B.</em>) <em>annulatus</em>, <em>Rh.</em> <em>sanguineus</em> s.l., and <em>Hy. dromedarii</em>, respectively. Phylogenetically, based on 16S rDNA, <em>Rh. sanguineus</em> s.l. ticks belonged to the southeastern Europe lineage from Romania and Greece, <em>Rh.</em> (<em>B.</em>) <em>annulatus</em> ticks were similar to Turkish populations, and <em>Hy. dromedarii</em> were close to populations from Tunisia. Based on ITS2 sequences, <em>Rh. sanguineus</em> s.l. from dogs were identical to Nigerian populations; however, those collected from sheep were closer to Iranian populations with 4.1% nucleotide divergence between the two populations of different hosts. <em>Rh.</em> (<em>B.</em>) <em>annulatus</em> ticks were identical to a population from Romania, whereas <em>Hy.</em> <em>dromedarii</em> was close to a population from Kenya. This is the first report of nucleotide sequences of 16S rDNA and ITS2 in integration with morphological identification of ticks from this part of Egypt.
DOI: 10.5281/zenodo.5708485
title: Literature Overview Blockchain Intermediation Concepts

description: The dataset was created in a structured literature review (Webster and Watson, 2002). It provides a complete overview of the 90 identified articles.
DOI: 10.5281/zenodo.5708484
title: Literature Overview Blockchain Intermediation Concepts

description: The dataset was created in a structured literature review (Webster and Watson, 2002). It provides a complete overview of the 90 identified articles.
DOI: 10.6084/m9.figshare.17033435
title: Data Systematic Review Tree-Related Microhabitats

description: Corpus obtained as a result of the systemic review of literature on tree-related microhabitats conducted for the article "Tree-related microhabitats are promising yet underused tools for biodiversity and nature conservation: a systematic review for international perspectives". Dataset used for the submission of the article, not peer-reviewed.
DOI: 10.15468/kxz2nb
title: Lectotypification of the N. L. Burman’s fern name Adiantum denticulatum

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mazumdar, Jaideep, Callmander, Martin W. (2018): Lectotypification of the N. L. Burman’s fern name Adiantum denticulatum. Candollea 73 (2): 217-220, DOI: 10.15553/c2018v732a6
DOI: 10.6084/m9.figshare.17029727.v1
title: A comprehensive experimental assessment of glyphosate ecological impacts in riparian forest restoration

description: Competition with invasive grasses is one of the most important drivers of tree planting failures, especially in tropical forests. A widely disseminated weeding approach has been glyphosate spraying, the most used herbicide globally in forestry and ecosystem restoration. However, glyphosate use in restoration is highly controversial and requires further studies to elucidate its effects on restoration processes and the environment. We evaluated the use of glyphosate in riparian forest restoration and its impacts on tree planting costs, weed control efficiency, planted seedling performance, herbaceous and woody species regeneration, soil bacteria, and environmental contamination, using mowing treatments as a reference and based on a controlled experiment established in the Brazilian Atlantic Forest. Glyphosate spraying reduced by one-half and one-third the accumulated aboveground biomass of, respectively, weeds in general and of the invasive grass Urochloa decumbens compared to mowing treatments, and it reduced the cost by half. The performance of planted tree seedlings was markedlyfavored by glyphosate spraying compared to mowing treatments, as expressed by improved seedling height (~twice higher), crown area (~59 higher), and basal area (~59 higher); the regeneration of both native woody and ruderal herbaceous plants were also enhanced. Neither glyphosate nor its metabolite Aminomethylphosphonic acid (AMPA) residues were detected in either water runoff or soil samples, but they were found at relatively high concentrations in the runoff sediments (from 1.32 to 24.75 mg/kg for glyphosate and from 1.75 to 76.13 mg/kg for AMPA). Soil bacteria communities differed before and after glyphosate spraying in comparison to mowing plots (without glyphosate). Glyphosate spraying was far more cost effective than mowing for controlling U. decumbens and greatly improved the performance of planted tree seedlings and natural regeneration, while not leaving residues in soil and water. However, the changes in the structure of bacterial communities and high concentration of glyphosate and AMPA residues in runoff sediments highlight the need for caution when using this herbicide in riparian buffers. We present alternatives for reducing glyphosate use and minimizing its risks in tree planting initiatives.
DOI: 10.6084/m9.figshare.17029727
title: A comprehensive experimental assessment of glyphosate ecological impacts in riparian forest restoration

description: Competition with invasive grasses is one of the most important drivers of tree planting failures, especially in tropical forests. A widely disseminated weeding approach has been glyphosate spraying, the most used herbicide globally in forestry and ecosystem restoration. However, glyphosate use in restoration is highly controversial and requires further studies to elucidate its effects on restoration processes and the environment. We evaluated the use of glyphosate in riparian forest restoration and its impacts on tree planting costs, weed control efficiency, planted seedling performance, herbaceous and woody species regeneration, soil bacteria, and environmental contamination, using mowing treatments as a reference and based on a controlled experiment established in the Brazilian Atlantic Forest. Glyphosate spraying reduced by one-half and one-third the accumulated aboveground biomass of, respectively, weeds in general and of the invasive grass Urochloa decumbens compared to mowing treatments, and it reduced the cost by half. The performance of planted tree seedlings was markedlyfavored by glyphosate spraying compared to mowing treatments, as expressed by improved seedling height (~twice higher), crown area (~59 higher), and basal area (~59 higher); the regeneration of both native woody and ruderal herbaceous plants were also enhanced. Neither glyphosate nor its metabolite Aminomethylphosphonic acid (AMPA) residues were detected in either water runoff or soil samples, but they were found at relatively high concentrations in the runoff sediments (from 1.32 to 24.75 mg/kg for glyphosate and from 1.75 to 76.13 mg/kg for AMPA). Soil bacteria communities differed before and after glyphosate spraying in comparison to mowing plots (without glyphosate). Glyphosate spraying was far more cost effective than mowing for controlling U. decumbens and greatly improved the performance of planted tree seedlings and natural regeneration, while not leaving residues in soil and water. However, the changes in the structure of bacterial communities and high concentration of glyphosate and AMPA residues in runoff sediments highlight the need for caution when using this herbicide in riparian buffers. We present alternatives for reducing glyphosate use and minimizing its risks in tree planting initiatives.
DOI: 10.6084/m9.figshare.16885330
title: Effects of COVID-19 Restrictions on University Students Mental Health

description: Restrictions affecting mental health and wellbeing can significantly affect vulnerable populations that include university students. Therefore, we undertook a scoping review by searching LitCovid, the WHO Covid-19 database, Google Scholar and bibliographies of retrieved articles for systematic reviews that included data on depression and anxiety in university students during the COVID-19 pandemic. We found nine systematic reviews (two were preprints) that varied from five included studies to 89. The quality of the short-term evidence was rated low to moderate, and evidence for the medium to long term impact was low (the prevalence estimates may change substantially if further high-quality evidence becomes available).<br>Reviews consistently reported high prevalence rates of anxiety and depression amongst university and college students. Rates of depression and anxiety were higher in those with financial difficulties, in non-Chinese students, in older students and females. In the most extensive review to date the pooled prevalence of depression was 34% (95%CI: 30-38%, 52 studies, n=1,277,755, I2 100%). The prevalence of anxiety was 32% (95% CI: 26-38%, 69 studies I2 100%). Also, anxiety was found at higher rates in older students, in those living alone, and in female students. Only one review concluded the evidence does not suggest a widespread negative effect on mental health in COVID-19 compared with previous years.<br>The overall impact of COVID-19 on the mental health and wellbeing of university students is substantial.<br><b>Appendices</b><b><br></b>Full Report - Effects of COVID-19 Restrictions on University Students Mental Health<br><b>Figures</b><br>Figure 1. PRISMA Flow Chart<br>Figure 2. Included Reviews<br>Figure 3. Deng 2021 Results<br><b>Tables</b><br>Table 1. Review Populations and Impacts
DOI: 10.6084/m9.figshare.16885330.v1
title: Effects of COVID-19 Restrictions on University Students Mental Health

description: Restrictions affecting mental health and wellbeing can significantly affect vulnerable populations that include university students. Therefore, we undertook a scoping review by searching LitCovid, the WHO Covid-19 database, Google Scholar and bibliographies of retrieved articles for systematic reviews that included data on depression and anxiety in university students during the COVID-19 pandemic. We found nine systematic reviews (two were preprints) that varied from five included studies to 89. The quality of the short-term evidence was rated low to moderate, and evidence for the medium to long term impact was low (the prevalence estimates may change substantially if further high-quality evidence becomes available).<br>Reviews consistently reported high prevalence rates of anxiety and depression amongst university and college students. Rates of depression and anxiety were higher in those with financial difficulties, in non-Chinese students, in older students and females. In the most extensive review to date the pooled prevalence of depression was 34% (95%CI: 30-38%, 52 studies, n=1,277,755, I2 100%). The prevalence of anxiety was 32% (95% CI: 26-38%, 69 studies I2 100%). Also, anxiety was found at higher rates in older students, in those living alone, and in female students. Only one review concluded the evidence does not suggest a widespread negative effect on mental health in COVID-19 compared with previous years.<br>The overall impact of COVID-19 on the mental health and wellbeing of university students is substantial.<br><b>Appendices</b><b><br></b>Full Report - Effects of COVID-19 Restrictions on University Students Mental Health<br><b>Figures</b><br>Figure 1. PRISMA Flow Chart<br>Figure 2. Included Reviews<br>Figure 3. Deng 2021 Results<br><b>Tables</b><br>Table 1. Review Populations and Impacts
DOI: 10.6084/m9.figshare.17033496
title: Interactive Slice Visualization for Exploring Machine Learning Models

description: Machine learning models fit complex algorithms to arbitrarily large datasets. These algorithms are well known to be high on performance and low on interpretability. We use interactive visualization of slices of predictor space to address the interpretability deficit; in effect opening up the black-box of machine learning algorithms, for the purpose of interrogating, explaining, validating and comparing model fits. Slices are specified directly through interaction, or using various touring algorithms designed to visit high-occupancy sections, or regions where the model fits have interesting properties. The methods presented here are implemented in the R package condvis2. Supplementary files for this article are available online.
DOI: 10.5281/zenodo.5708560
title: Dataset of the Pregnant Women's Survey

description: This DATA is related to the Lebanese pregnant women. It was collected during the rapid rise period of the COVID-19 pandemic in Lebanon. It includes sociodemographic variables, responses to questions related to the knowledge, risk perception and practices of the pregnant women during the Covid-19 pandemic. In addition, it includes the PTSD related Covid-19 questionnaire, Corona Virus Anxiety Scale (CAS), Fear of Covid-19 scale (FCS) and the PHQ9 scale.
DOI: 10.5281/zenodo.5708559
title: Dataset of the Pregnant Women's Survey

description: This DATA is related to the Lebanese pregnant women. It was collected during the rapid rise period of the COVID-19 pandemic in Lebanon. It includes sociodemographic variables, responses to questions related to the knowledge, risk perception and practices of the pregnant women during the Covid-19 pandemic. In addition, it includes the PTSD related Covid-19 questionnaire, Corona Virus Anxiety Scale (CAS), Fear of Covid-19 scale (FCS) and the PHQ9 scale.
DOI: 10.15468/d3e8u2
title: Typification of Fritillaria tubiformis Gren. & Godr., Fritillaria delphinensis f. moggridgei Planch. and Fritillaria delphinensis var. burnatii Planch. (Liliaceae) from SW Europe

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bartolucci, Fabrizio, Peruzzi, Lorenzo (2012): Typification of Fritillaria tubiformis Gren. & Godr., Fritillaria delphinensis f. moggridgei Planch. and Fritillaria delphinensis var. burnatii Planch. (Liliaceae) from SW Europe. Candollea 67 (1): 23-29, DOI: 10.15553/c2012v671a2
DOI: 10.15468/z9tpcj
title: Kermadecia brinoniae (Proteaceae: Macadamieae), a new species from New Caledonia previously confused with K. elliptica

description: This dataset contains the digitized treatments in Plazi based on the original journal article Hopkins, Helen C. F., Pillon, Yohan (2019): Kermadecia brinoniae (Proteaceae: Macadamieae), a new species from New Caledonia previously confused with K. elliptica. Candollea 74 (1): 85-92, DOI: 10.15553/c2019v741a9
DOI: 10.5517/ccdc.csd.cc228q47
title: CCDC 1914998: Experimental Crystal Structure Determination

description: Related Article: Zhenyu Zhang, Yu Sun, Xu Zhao, Nanxi Jin, Gaolei Xi, Xuedong Zhang, Jingjin Cao, Jia Wu, Xia Fan, Wenping Qin|2021|Soft Matter|17|9866|doi:10.1039/D1SM00935D
DOI: 10.5517/ccdc.csd.cc22ftkx
title: CCDC 1919909: Experimental Crystal Structure Determination

description: Related Article: Byung-Chang Oh, Eunyoung Yoon, Jintaek Gong, Jaewook Kim, Russell W. Driver, Yongjun Kim, Woo Youn Kim, Hee-Seung Lee|2021|Small|17|2102525|doi:10.1002/smll.202102525
DOI: 10.5517/ccdc.csd.cc21yfr6
title: CCDC 1905128: Experimental Crystal Structure Determination

description: Related Article: Byung-Chang Oh, Eunyoung Yoon, Jintaek Gong, Jaewook Kim, Russell W. Driver, Yongjun Kim, Woo Youn Kim, Hee-Seung Lee|2021|Small|17|2102525|doi:10.1002/smll.202102525
DOI: 10.34740/kaggle/dsv/2823925
title: Bolsonaro votes vs excess of deaths per state BRA
DOI: 10.25345/c5x290
title: MassIVE MSV000088401 - Human skin fibroblast proteome in healthy aging
title: The changes in the proteome of different human tissues with advancing age are poorly characterized. Here, we studied the proteins present in skin fibroblasts collected from 82 healthy individuals across a wide age spectrum (22 to 89 years old) who participated in the GESTALT (Genetic and Epigenetic Signatures of Translational Aging Laboratory Testing) study of the National Institute on Aging, NIH. Proteins were extracted from lysed fibroblasts and subjected to liquid chromatography-mass spectrometry analysis, and the expression levels of 9341 proteins were analyzed by linear regression models. Several differentially expressed proteins were implicated in processes that change with age, including autophagy, scavenging of reactive oxygen species (ROS), ribosome biogenesis, DNA replication, and DNA repair. Changes on these prominent pathways were further assessed using molecular and cell-culture approaches. Our study establishes a framework of the global proteome governing the homeostasis of the aged skin.
DOI: 10.3886/e154882
title: Integration versus meritocracy? Competing educational goals during the Covid-19 pandemic

description: These files include the interview guides and permission forms used to collect the interview data analyzed in “Integration versus meritocracy? Competing educational goals during the Covid-19 pandemic.” <br><br>The abstract for the paper is as follows.<br><br>Alongside the immediate challenges of operating schools during the Covid-19 pandemic, over the past year, parents, students, and policymakers around the country have also debated equity and access to some of the country’s most elite and segregated public schools. This qualitative case study examines how New York City activists conceptualized educational equity during the pandemic. Conceptually framed by Labaree’s (1997) typology of the 3 competing purposes of education—democratic equality, social efficiency, and social mobility—we document different lessons learned from the pandemic by integration activists, who emphasized school integration for democratic equality; and meritocratic activists, who prioritized retaining the existing stratified system mainly to foster social mobility and social efficiency. Our findings highlight the challenge of sustaining a vision oriented around the public good amid powerful framings emphasizing the individual purposes of education.
description: face-to-face interview;
DOI: 10.3886/e154882v1
title: Integration versus meritocracy? Competing educational goals during the Covid-19 pandemic

description: These files include the interview guides and permission forms used to collect the interview data analyzed in “Integration versus meritocracy? Competing educational goals during the Covid-19 pandemic.” <br><br>The abstract for the paper is as follows.<br><br>Alongside the immediate challenges of operating schools during the Covid-19 pandemic, over the past year, parents, students, and policymakers around the country have also debated equity and access to some of the country’s most elite and segregated public schools. This qualitative case study examines how New York City activists conceptualized educational equity during the pandemic. Conceptually framed by Labaree’s (1997) typology of the 3 competing purposes of education—democratic equality, social efficiency, and social mobility—we document different lessons learned from the pandemic by integration activists, who emphasized school integration for democratic equality; and meritocratic activists, who prioritized retaining the existing stratified system mainly to foster social mobility and social efficiency. Our findings highlight the challenge of sustaining a vision oriented around the public good amid powerful framings emphasizing the individual purposes of education.
description: face-to-face interview;
DOI: 10.6084/m9.figshare.16899985
title: Rad-loci_3.vcf

description: ddRadloci matrix from MSL gradient filtered by linkage disequilibrium.<br>
DOI: 10.6084/m9.figshare.16899985.v1
title: Rad-loci_3.vcf

description: ddRadloci matrix from MSL gradient filtered by linkage disequilibrium.<br>
DOI: 10.15468/jrxkh7
title: Androsace albimontana (Primulaceae): une nouvelle espèce des Alpes (France, Suisse, Italie) à distinguer de A. pubescens

description: This dataset contains the digitized treatments in Plazi based on the original journal article Jacquemoud, Fernand, Jordan, Denis (2020): Androsace albimontana (Primulaceae): une nouvelle espèce des Alpes (France, Suisse, Italie) à distinguer de A. pubescens. Candollea 75 (1): 149-155, DOI: 10.15553/c2020v751a14
DOI: 10.6084/m9.figshare.17035328
title: Rad-loci2.vcf

description: Rad-loci2
DOI: 10.6084/m9.figshare.17035328.v1
title: Rad-loci2.vcf

description: Rad-loci2
DOI: 10.6084/m9.figshare.17035445
title: calc_WoodlandTrust_2021-11-17

description: Analysis performed by Melissa Bedinger (dr.m.bedinger@gmail.com) for SoGive broad analysis of Woodland Trust (https://app.sogive.org/#simpleedit?charityId=woodland-trust) last checked 2021-11-17.<br> Live link to Google Sheet: https://docs.google.com/spreadsheets/d/18SfbZAjaCV3IWQ6L0gt8hP4mfEBVu1uHAMjCSW-AEVw/edit?usp=sharing<br>
DOI: 10.6084/m9.figshare.17035445.v1
title: calc_WoodlandTrust_2021-11-17

description: Analysis performed by Melissa Bedinger (dr.m.bedinger@gmail.com) for SoGive broad analysis of Woodland Trust (https://app.sogive.org/#simpleedit?charityId=woodland-trust) last checked 2021-11-17.<br> Live link to Google Sheet: https://docs.google.com/spreadsheets/d/18SfbZAjaCV3IWQ6L0gt8hP4mfEBVu1uHAMjCSW-AEVw/edit?usp=sharing<br>
DOI: 10.6084/m9.figshare.17033496.v1
title: Interactive Slice Visualization for Exploring Machine Learning Models

description: Machine learning models fit complex algorithms to arbitrarily large datasets. These algorithms are well known to be high on performance and low on interpretability. We use interactive visualization of slices of predictor space to address the interpretability deficit; in effect opening up the black-box of machine learning algorithms, for the purpose of interrogating, explaining, validating and comparing model fits. Slices are specified directly through interaction, or using various touring algorithms designed to visit high-occupancy sections, or regions where the model fits have interesting properties. The methods presented here are implemented in the R package condvis2. Supplementary files for this article are available online.
DOI: 10.6084/m9.figshare.17035331
title: Rad-loci_4.vcf

description: Rad loci 4<br>
DOI: 10.6084/m9.figshare.17035331.v1
title: Rad-loci_4.vcf

description: Rad loci 4<br>