cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8193660
title: CGGA Clinical Datasets

description: <strong>Abstract:</strong> The Chinese Glioma Datasets (CGGA) are comprehensive and valuable collections of data related to glioma, a type of brain tumor, originating from Chinese patients. The CGGA is a data portal for the storage and interactive exploration of cross-omics data, including nearly 2000 primary and recurrent glioma samples. This dataset contains phenotype information. The Sample IDs serve as unique identifiers for each sample. <strong>Inspiration:</strong> This dataset was uploaded to UBRITE for GTKB project. <strong>Acknowledgments:</strong> Zhao, Z., Zhang, KN., Wang, QW., et al. Chinese Glioma Genome Atlas (CGGA): A Comprehensive Resource with Functional Genomic Data from Chinese Glioma Patients (2021). Genomics, Proteomics & Bioinformatics 19(1):1-12. Fang, S., Liang, J., Qian, T., et al. (2017). Anatomic Location of Tumor Predicts the Accuracy of Motor Function Localization in Diffuse Lower-Grade Gliomas Involving the Hand Knob Area. AMERICAN JOURNAL OF NEURORADIOLOGY. 38(10): 1990-1997. Wang, Y., Wang, Y., Fan, X., et al. (2017). Putamen involvement and survival outcomes in patients with insular low-grade gliomas. JOURNAL OF NEUROSURGERY. 126(6): 1788-1794. <strong>U-BRITE last update: </strong>07/28/2023
description: UBRITE Location: /data/project/ubrite/gtkb/CGGA/Clinical
description: {"references": ["Zhao, Z., Zhang, KN., Wang, QW., et al. Chinese Glioma Genome Atlas (CGGA): A Comprehensive Resource with Functional Genomic Data from Chinese Glioma Patients (2021). Genomics, Proteomics & Bioinformatics 19(1):1-12.", "Fang, S., Liang, J., Qian, T., et al. (2017). Anatomic Location of Tumor Predicts the Accuracy of Motor Function Localization in Diffuse Lower-Grade Gliomas Involving the Hand Knob Area. AMERICAN JOURNAL OF NEURORADIOLOGY. 38(10): 1990-1997.", "Wang, Y., Wang, Y., Fan, X., et al. (2017). Putamen involvement and survival outcomes in patients with insular low-grade gliomas. JOURNAL OF NEUROSURGERY. 126(6): 1788-1794."]}
DOI: 10.5281/zenodo.8193669
title: agave_americana_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8193668
title: agave_americana_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8193677
title: agave_fourcroydes_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8193676
title: agave_fourcroydes_decontaminated_gx.fasta.gz

description: .
DOI: 10.18739/a2b56d61d
title: Ice core site selection attempt on the Mt. Logan summit plateau, Yukon, 2021-2022

description: Ice cores provide critical archives of past climate change and have directly led to our modern understanding of climate change and its drivers and consequences. Selecting an ice core site is difficult and requires careful study and site selection in order to achieve a useful paleoclimate record. Ground penetrating radar systems are able to image the internal stratigraphy of glaciers as well as measure overall glacier thickness, thereby permitting the selection of an optimal ice coring site. In this project, we use ground penetrating radar profiles collected in 2021 and 2022 to select the drill site for the 2022 Mt. Logan ice core. The profiles included here determined the drill site for this new ice core that will likely provide the longest and highest elevation ice core record in continental North America.
DOI: 10.25919/6qtz-sj50
title: Parkes observations for project P1050 semester 2023APRS_11

description: This is a request for the observation time for the timing campaign of new pulsars discovered in the reprocessing of the low-latitude Galactic plane section of the HTRU-S survey (HTRU-S LowLat) and the Parkes Multibeam Pulsar Survey (PMPS). We have completed 90 % of the HTRU-S LowLat survey and completed zero acceleration PMPS search with GPU-based coherent acceleration search, template bank, and fast folding algorithm pipelines and now have discovered 112 previously unknown pulsars among which 18 were found in the PMPS. Interesting science can usually only be derived from a new pulsar after confirmation, and a follow-up timing campaign is carried out. At least one year of initial timing is the minimum timespan required to fully characterise any newly-discovered pulsars, essential for deriving pulsar parameters such as the characteristic age, magnetic field strength, and spin-down rate, as well as for detecting any unexpected behaviour of the pulsar which might result from emission instabilities. This project is necessary for the timing of several interesting pulsars, including binary pulsars, high DM pulsars, scattered profile pulsars, and bright ones that show emissions in larger bandwidths in the UWL band. Apart from this, finding the nature of a unique binary pulsar system via a dedicated observing campaign is also another goal. The follow-up timing in semester 2023APRS will assist in completing many exciting large-term science goals.
DOI: 10.5281/zenodo.8193680
title: Indoor/outdoor air temperature dataset - IN-HALE Project

description: IN-HALE project aims to identify the thermal summer conditions inside the residences of residents over 65 years of age and to identify the individual determinants of exposure to heat, as well as the barriers (material and/or immaterial) for thermal adaptation. To this end, we will monitor the indoor thermal environment of 20 dwellings, through visits of objective assessment of the thermal behavior of the dwellings and using the installation of thermal data loggers during the summer period. Further info: www.in-hale.org
DOI: 10.5281/zenodo.8193679
title: Indoor/outdoor air temperature dataset - IN-HALE Project

description: IN-HALE project aims to identify the thermal summer conditions inside the residences of residents over 65 years of age and to identify the individual determinants of exposure to heat, as well as the barriers (material and/or immaterial) for thermal adaptation. To this end, we will monitor the indoor thermal environment of 20 dwellings, through visits of objective assessment of the thermal behavior of the dwellings and using the installation of thermal data loggers during the summer period. Further info: www.in-hale.org
DOI: 10.25919/p7tb-k618
title: Parkes observations for project P737 semester 2023APRS_04

description: The aim of this proposal is to carry out tests of the new backend instruments which cannot be carried out during standard maintenance periods. The scheduled time is used to measure beam shapes, determine polarisation calibration solutions and commission the National Facility observing modes for the new wide-band receiver.
DOI: 10.5281/zenodo.8193720
title: coelogynopora_nodosa_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8193719
title: coelogynopora_nodosa_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.6120914
title: The Spitzer Data Fusion

description: We present the Spitzer Data Fusion, a database incorporating far-ultraviolet to far-infrared flux measurements as well as photometric and spectroscopic redshifts for 4.4 million IRAC-selected sources detected over 8 extragalactic fields covering 65 deg2 observed by Spitzer in all IRAC and MIPS bands during its cryogenic mission. The catalogs and their future updates are publicly available at https://www.mattiavaccari.net/df and/or at https://zenodo.org/deposit/6120914
description: MV acknowledges support from the European Commission Research Executive Agency (FP7-SPACE-2013-1 GA 607254) and the South African Department of Science and Technology (DST/CON 0134/2014) as part of the Herschel Extragalactic Legacy Project - HELP. MV acknowledges financial support from the Inter-University Institute for Data Intensive Astronomy (IDIA), a partnership of the University of Cape Town, the University of Pretoria, the University of the Western Cape and the South African Radio Astronomy Observatory, and from the South African Department of Science and Innovation's National Research Foundation under the ISARP RADIOSKY2020 Joint Research Scheme (DSI-NRF Grant Number 113121) and the CSUR HIPPO Project (DSI-NRF Grant Number 121291).
DOI: 10.5281/zenodo.8193746
title: hypsolebias_coamazonicus_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8193745
title: hypsolebias_coamazonicus_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8193755
title: melanodrymia_brightae_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8193754
title: melanodrymia_brightae_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8193718
title: Ivy Gap GBM Clinical Data

description: <strong>Abstract:</strong> The Ivy Glioblastoma Atlas Project represents a fundamental tool for investigating the cellular and molecular underpinnings of glioblastoma. It offers an accessible online atlas and database containing valuable clinical and genomic information, which will undoubtedly facilitate future studies on glioblastoma pathogenesis, diagnosis, and therapeutic approaches. Glioblastoma is a highly aggressive brain tumor with a bleak prognosis, and its intricate molecular and cellular characteristics have not been fully elucidated in relation to conventional diagnostic histologic features. The dataset provided is comprised of de-identified clinical data pertaining to both patients and tumors. <strong>Inspiration:</strong> This dataset was uploaded to UBRITE for GTKB project. <strong>Acknowledgments:</strong> Puchalski RB, Shah N, Miller J, et al. An anatomic transcriptional atlas of human glioblastoma. Science. 2018;360(6389):660-663. doi:10.1126/science.aaf2666 <strong>U-BRITE last update: </strong>07/28/2023
description: UBRITE location: /data/project/ubrite/gtkb/IvyGap
description: {"references": ["Puchalski RB, Shah N, Miller J, et al. An anatomic transcriptional atlas of human glioblastoma. Science. 2018;360(6389):660-663. doi:10.1126/science.aaf2666"]}
DOI: 10.5281/zenodo.8193717
title: Ivy Gap GBM Clinical Data

description: <strong>Abstract:</strong> The Ivy Glioblastoma Atlas Project represents a fundamental tool for investigating the cellular and molecular underpinnings of glioblastoma. It offers an accessible online atlas and database containing valuable clinical and genomic information, which will undoubtedly facilitate future studies on glioblastoma pathogenesis, diagnosis, and therapeutic approaches. Glioblastoma is a highly aggressive brain tumor with a bleak prognosis, and its intricate molecular and cellular characteristics have not been fully elucidated in relation to conventional diagnostic histologic features. The dataset provided is comprised of de-identified clinical data pertaining to both patients and tumors. <strong>Inspiration:</strong> This dataset was uploaded to UBRITE for GTKB project. <strong>Acknowledgments:</strong> Puchalski RB, Shah N, Miller J, et al. An anatomic transcriptional atlas of human glioblastoma. Science. 2018;360(6389):660-663. doi:10.1126/science.aaf2666 <strong>U-BRITE last update: </strong>07/28/2023
description: UBRITE location: /data/project/ubrite/gtkb/IvyGap
description: {"references": ["Puchalski RB, Shah N, Miller J, et al. An anatomic transcriptional atlas of human glioblastoma. Science. 2018;360(6389):660-663. doi:10.1126/science.aaf2666"]}
DOI: 10.5281/zenodo.8193763
title: milvago_chimachima_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8193762
title: milvago_chimachima_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8193767
title: Ivy Gap GBM Gene Expression

description: <strong>Abstract:</strong> The Ivy Glioblastoma Atlas Project represents a fundamental tool for investigating the cellular and molecular underpinnings of glioblastoma. It offers an accessible online atlas and database containing valuable clinical and genomic information, which will undoubtedly facilitate future studies on glioblastoma pathogenesis, diagnosis, and therapeutic approaches. Glioblastoma is a highly aggressive brain tumor with a bleak prognosis, and its intricate molecular and cellular characteristics have not been fully elucidated in relation to conventional diagnostic histologic features. The dataset provided is comprised of gene expression values for each sample and gene. <strong>Inspiration:</strong> This dataset was uploaded to UBRITE for GTKB project. <strong>Acknowledgments:</strong> Puchalski RB, Shah N, Miller J, et al. An anatomic transcriptional atlas of human glioblastoma. Science. 2018;360(6389):660-663. doi:10.1126/science.aaf2666 <strong>U-BRITE last update: </strong>07/28/2023
description: UBRITE location: /data/project/ubrite/gtkb/IvyGap
description: {"references": ["Puchalski RB, Shah N, Miller J, et al. An anatomic transcriptional atlas of human glioblastoma. Science. 2018;360(6389):660-663. doi:10.1126/science.aaf2666"]}
DOI: 10.5281/zenodo.8193766
title: Ivy Gap GBM Gene Expression

description: <strong>Abstract:</strong> The Ivy Glioblastoma Atlas Project represents a fundamental tool for investigating the cellular and molecular underpinnings of glioblastoma. It offers an accessible online atlas and database containing valuable clinical and genomic information, which will undoubtedly facilitate future studies on glioblastoma pathogenesis, diagnosis, and therapeutic approaches. Glioblastoma is a highly aggressive brain tumor with a bleak prognosis, and its intricate molecular and cellular characteristics have not been fully elucidated in relation to conventional diagnostic histologic features. The dataset provided is comprised of gene expression values for each sample and gene. <strong>Inspiration:</strong> This dataset was uploaded to UBRITE for GTKB project. <strong>Acknowledgments:</strong> Puchalski RB, Shah N, Miller J, et al. An anatomic transcriptional atlas of human glioblastoma. Science. 2018;360(6389):660-663. doi:10.1126/science.aaf2666 <strong>U-BRITE last update: </strong>07/28/2023
description: UBRITE location: /data/project/ubrite/gtkb/IvyGap
description: {"references": ["Puchalski RB, Shah N, Miller J, et al. An anatomic transcriptional atlas of human glioblastoma. Science. 2018;360(6389):660-663. doi:10.1126/science.aaf2666"]}
DOI: 10.22003/xfel.eu-data-900335-00
title: LPD SuperModule Commissioning
DOI: 10.22003/xfel.eu-data-900344-00
title: SPB/SFX commissioning
DOI: 10.6084/m9.figshare.23734164
title: Blood Group Detection with ECG

description: Blood Group Detection with ECG
DOI: 10.6084/m9.figshare.23802662
title: Histone deacetylase 3 regulates microglial function through histone deacetylation

description: As the primary innate immune cells of the brain, microglia respond to damage and disease through pro-inflammatory release of cytokines and neuroinflammatory molecules. Histone acetylation is an activating transcriptional mark that regulates inflammatory gene expression. Inhibition of histone deacetylase 3 (Hdac3) has been utilized in pre-clinical models of depression, stroke, and spinal cord injury to improve recovery following injury, but the molecular mechanisms underlying Hdac3’s regulation of inflammatory gene expression in microglia is not well understood. To address this lack of knowledge, we examined how pharmacological inhibition of Hdac3 in an immortalized microglial cell line (BV2) impacted histone acetylation and gene expression of pro- and anti-inflammatory genes in response to immune challenge with lipopolysaccharide (LPS). Flow cytometry and cleavage under tags & release using nuclease (CUT & RUN) revealed that Hdac3 inhibition increases global and promoter-specific histone acetylation, resulting in the release of gene repression at baseline and enhanced responses to LPS. Hdac3 inhibition enhanced neuroprotective functions of microglia in response to LPS through reduced nitric oxide release and increased phagocytosis. The findings suggest Hdac3 serves as a regulator of microglial inflammation, and that inhibition of Hdac3 facilitates the microglial response to inflammation and its subsequent clearing of debris or damaged cells. Together, this work provides new mechanistic insights into therapeutic applications of Hdac3 inhibition which mediate reduced neuroinflammatory insults through microglial response.
DOI: 10.6084/m9.figshare.23802662.v1
title: Histone deacetylase 3 regulates microglial function through histone deacetylation

description: As the primary innate immune cells of the brain, microglia respond to damage and disease through pro-inflammatory release of cytokines and neuroinflammatory molecules. Histone acetylation is an activating transcriptional mark that regulates inflammatory gene expression. Inhibition of histone deacetylase 3 (Hdac3) has been utilized in pre-clinical models of depression, stroke, and spinal cord injury to improve recovery following injury, but the molecular mechanisms underlying Hdac3’s regulation of inflammatory gene expression in microglia is not well understood. To address this lack of knowledge, we examined how pharmacological inhibition of Hdac3 in an immortalized microglial cell line (BV2) impacted histone acetylation and gene expression of pro- and anti-inflammatory genes in response to immune challenge with lipopolysaccharide (LPS). Flow cytometry and cleavage under tags & release using nuclease (CUT & RUN) revealed that Hdac3 inhibition increases global and promoter-specific histone acetylation, resulting in the release of gene repression at baseline and enhanced responses to LPS. Hdac3 inhibition enhanced neuroprotective functions of microglia in response to LPS through reduced nitric oxide release and increased phagocytosis. The findings suggest Hdac3 serves as a regulator of microglial inflammation, and that inhibition of Hdac3 facilitates the microglial response to inflammation and its subsequent clearing of debris or damaged cells. Together, this work provides new mechanistic insights into therapeutic applications of Hdac3 inhibition which mediate reduced neuroinflammatory insults through microglial response.
DOI: 10.25919/5jpy-0691
title: Parkes observations for project P1176 semester 2023APRS_05

description: Pulsars and their winds are among nature's most powerful particle accelerators, producing particles with energies up to a few PeVatrons. In addition to high-energy radiation from the magnetosphere, the rotational energy of a neutron star is carried away in the form of magnetized ultra-relativistic pulsar winds. Investigation of pulsar wind nebula (PWN) offers an excellent chance to determine the interaction details of relativistic flows with their surroundings that may never be possible in other classes of source. Our recent analyses of ASKAP observations of Galactic Plane uncovered previously known X-ray PWN CXOU J163802.6-471358 (nicknamed as Potoroo). Recently, we have successfully detected a pulsar candidate associated with Potoroo with Parkes telescope. It is detected at 3 GHz with a dispersion measure of DM = 1553 pc cm-3 and a rotation period of 65.74 ms. Here we propose timing observations for this pulsar with the Parkes Ultra-Wideband Low (UWL) receiver. Through pulsar timing, we will be able to obtain precise measurements of the pulsar position and proper motions, and the spin-down of the pulsar which enables us to independently estimate the age of the system. Long-term timing will also enable us to measure the parallax of the system and search for pulsation at high energies (i.e. X-ray and gamma-ray)
DOI: 10.5281/zenodo.8190316
title: Processed snRNA-seq data from "Divergent single cell transcriptome and epigenome alterations in ALS and FTD patients with C9orf72 mutation"

description: Processed snRNA-seq data from "Divergent single cell transcriptome and epigenome alterations in ALS and FTD patients with C9orf72 mutation". All nuclei passed QC and were corrected for background noise using cellBender. Files are in R objects saved in RDS (R Data Serialization) format. This repo contains one Seurat v4 object and one gene-by-cell raw RNA count matrix in sparse matrix format (dgCMatrix).
description: {"references": ["https://doi.org/10.1101/2022.11.17.516859"]}
DOI: 10.5281/zenodo.8190317
title: Processed snRNA-seq data from "Divergent single cell transcriptome and epigenome alterations in ALS and FTD patients with C9orf72 mutation"

description: Processed snRNA-seq data from "Divergent single cell transcriptome and epigenome alterations in ALS and FTD patients with C9orf72 mutation". All nuclei passed QC and were corrected for background noise using cellBender. Files are in R objects saved in RDS (R Data Serialization) format. This repo contains one Seurat v4 object and one gene-by-cell raw RNA count matrix in sparse matrix format (dgCMatrix).
description: {"references": ["https://doi.org/10.1101/2022.11.17.516859"]}
DOI: 10.6084/m9.figshare.23802645
title: ICSE2024_330_Replication_Package

description: Replication package for publication 330, ICSE 2024
DOI: 10.6084/m9.figshare.23802645.v1
title: ICSE2024_330_Replication_Package

description: Replication package for publication 330, ICSE 2024
DOI: 10.6084/m9.figshare.23802669
title: Data Files

description: Three files are presented: 1) the annotated R code used for analysis using the mvabund, vegan, and ecoCopula packages, 2) file that show OTU x sample sequence counts with representative sequences and and taxonomic strings for each demarcated OTU, and 3) a sample mapping file describing which treatment factors each sample belongs to.
DOI: 10.6084/m9.figshare.23802669.v1
title: Data Files

description: Three files are presented: 1) the annotated R code used for analysis using the mvabund, vegan, and ecoCopula packages, 2) file that show OTU x sample sequence counts with representative sequences and and taxonomic strings for each demarcated OTU, and 3) a sample mapping file describing which treatment factors each sample belongs to.
DOI: 10.6084/m9.figshare.3761562.v2660
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.23802657
title: Fogt and Connolly (2021) Seasonal Antarctic Pressure Reconstruction merged with NOAA 20CRv3

description: Seasonal Antarctic Pressure Reconstructions from Fogt et al. (2019) merged with the NOAA 20CRv3. The datasets are merged at 60°S with a linear interpolation (poleward of 60°S is the Fogt et al. (2019) reconstruction; equatorward of 60°S is the NOAA 20CRv3 dataset). See Fogt and Connolly (2021) for more details. The data are at a 1°x1° latitude-longitude resolution, seasonally averaged (djf = December - February; mam = March - May; jja = June - August; son = September - October).<br>
DOI: 10.6084/m9.figshare.23802657.v1
title: Fogt and Connolly (2021) Seasonal Antarctic Pressure Reconstruction merged with NOAA 20CRv3

description: Seasonal Antarctic Pressure Reconstructions from Fogt et al. (2019) merged with the NOAA 20CRv3. The datasets are merged at 60°S with a linear interpolation (poleward of 60°S is the Fogt et al. (2019) reconstruction; equatorward of 60°S is the NOAA 20CRv3 dataset). See Fogt and Connolly (2021) for more details. The data are at a 1°x1° latitude-longitude resolution, seasonally averaged (djf = December - February; mam = March - May; jja = June - August; son = September - October).<br>
DOI: 10.6084/m9.figshare.23802735
title: GenBank accessions of new SARS-CoV-2 genomes from this study

description: GenBank accessions of new SARS-CoV-2 genomes from this study on genomic epidemiology in Minnesota
DOI: 10.6084/m9.figshare.23802735.v1
title: GenBank accessions of new SARS-CoV-2 genomes from this study

description: GenBank accessions of new SARS-CoV-2 genomes from this study on genomic epidemiology in Minnesota
DOI: 10.26093/cds/vizier.21990022
title: UV to far-IR photometry of galaxies

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'UV to Far-IR catalog of a galaxy sample in nearby clusters: spectral energy distributions and environmental trends.' (bibcode: 2012ApJS..199...22H)