cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.e6omtv
title: Occurrence Download

description: A dataset containing 340599 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aquila chrysaetos (Linnaeus, 1758)"
 ]
}

 The dataset includes 340599 records from 219 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005472-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6kp2am
title: Occurrence Download

description: A dataset containing 4635 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus capitatus Vand."
 ]
}

 The dataset includes 4635 records from 165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157254-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.barngz
title: Occurrence Download

description: A dataset containing 8504 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nycticorax nycticorax (Linnaeus, 1758)",
 "Country is Mexico"
 ]
}

 The dataset includes 8504 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005472-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jyncz8
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus cinereobrunneus Kük."
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157297-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrebug
title: Occurrence Download

description: A dataset containing 2871 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Testudo hermanni Gmelin, 1789"
 ]
}

 The dataset includes 2871 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005472-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vq36g6
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus cancrorum Cherm."
 ]
}

 The dataset includes 23 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157249-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aorcwr
title: Occurrence Download

description: A dataset containing 647 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "TaxonKey is Kaloula pulchra Gray, 1831",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 647 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005472-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rsjd8v
title: Occurrence Download

description: A dataset containing 333 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus carinatus R.Br."
 ]
}

 The dataset includes 333 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157256-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8m8n2s
title: Occurrence Download

description: A dataset containing 9183 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cerastium tomentosum L.",
 "Geometry POLYGON((-30.937499 61.938950,-30.937499 27.059125,52.03125 27.059125,52.03125 61.938950,-30.937499 61.938950))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9183 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005473-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tfyuh2
title: Occurrence Download

description: A dataset containing 343106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (June, December)",
 "OccurrenceStatus is Present",
 "TaxonKey is Sturnus vulgaris Linnaeus, 1758",
 "Year 2021-2022"
 ]
}

 The dataset includes 343106 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157248-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.swgeaq
title: Occurrence Download

description: A dataset listing the 109 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Especies silvestres de nopales mexicanos"
 ]
}

 The dataset's 109 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065014-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26559920
title: Additional file 3 of Golgi fucosyltransferase 1 reveals its important role in α-1,4-fucose modification of N-glycan in CRISPR/Cas9 diatom Phaeodactylum tricornutum

description: Additional file 3: Table S4. N-glycan structures of Glycoproteins in wild type. Table S5. N-glycan structures of Glycoproteins in PtFucT1-KO.
DOI: 10.15468/dl.n4gczc
title: Occurrence Download

description: A dataset containing 609 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Clanga clanga (Pallas, 1811)"
 ]
}

 The dataset includes 609 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065024-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sq68gq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.444233 -35.42352, 147.444233 -35.425765, 147.446478 -35.425765, 147.446478 -35.42352, 147.444233 -35.42352))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065025-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26577218.v1
title: Additional file 1 of GlyLES: Grammar-based Parsing of Glycans from IUPAC-condensed to SMILES

description: Additional file 1: Table S1. List of parsable monomers.
DOI: 10.6084/m9.figshare.26577221
title: Additional file 2 of GlyLES: Grammar-based Parsing of Glycans from IUPAC-condensed to SMILES

description: Additional file 2: Table S2. List of parsable modifications.
DOI: 10.15468/dl.5s4btz
title: Occurrence Download

description: A dataset containing 771 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Amblyomma Koch, 1844"
 ]
}

 The dataset includes 771 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065026-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nfccbk
title: Occurrence Download

description: A dataset containing 27249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Loxechinus albus (Molina, 1782)"
 ]
}

 The dataset includes 27249 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065027-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k8vrwd
title: Occurrence Download

description: A dataset containing 603 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Aquila nipalensis Hodgson, 1833"
 ]
}

 The dataset includes 603 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065028-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5kg4u5
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((147.471182 -35.421274, 147.471182 -35.425765, 147.475674 -35.425765, 147.475674 -35.421274, 147.471182 -35.421274)), ((147.475674 -35.425765, 147.475674 -35.428011, 147.480165 -35.428011, 147.480165 -35.425765, 147.475674 -35.425765)), ((147.475674 -35.428011, 147.468936 -35.428011, 147.468936 -35.432503, 147.475674 -35.432503, 147.475674 -35.428011)))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065029-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vjcfut
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Garrulax courtoisi Menegaux, 1923"
 ]
}

 The dataset includes 22 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065030-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26559920.v1
title: Additional file 3 of Golgi fucosyltransferase 1 reveals its important role in α-1,4-fucose modification of N-glycan in CRISPR/Cas9 diatom Phaeodactylum tricornutum

description: Additional file 3: Table S4. N-glycan structures of Glycoproteins in wild type. Table S5. N-glycan structures of Glycoproteins in PtFucT1-KO.
DOI: 10.6084/m9.figshare.26537647
title: Full-Length Transcriptome Analysis Reveals New Insights into the Immune System of Black Amur Bream (<i>Megalobrama terminalis</i>) Using PacBio Iso-Seq

description: The <i>Megalobrama</i> genus is economically significant in China, with <i>M. amblycephala </i>(Wuchang bream) being the most studied species due to its prominence. However, the immune system of <i>M. terminalis </i>(Black Amur bream), another species within the genus, remains underexplored despite its notable resistance to bacterial infections, including those caused by <i>Aeromonas hydrophila</i>. This study aimed to address this gap by conducting a comprehensive transcriptomic analysis of <i>M. terminalis</i>, focusing on immune-related genes. By employing a combination of PacBio Isoform Sequencing (Iso-Seq) and Illumina short-read sequencing, we identified and annotated 12,426 non-redundant isoforms, of which 11,872 were successfully annotated across multiple databases. The study also revealed 853 alternative splicing events, with retained introns being the most common type, and the identification of 672 transcription factors and 426 long non-coding RNAs. Importantly, we observed isoforms of several key immune-related genes, including alpha-2-macroglobulins, complement component 3, mannose-binding lectins, and those involved in the adaptive immune system, such as immunoglobulin heavy chains, and major histocompatibility complex (MHC) classes I and II. These findings offer valuable insights into the immune complexity of <i>M. terminalis</i> and reveal a sophisticated network of immune responses, providing a foundation for future research to enhance disease resistance in aquaculture. The study not only fills a critical knowledge gap but also has significant implications for improving the health and resilience of aquaculture stocks.<br><br><b>CorrectHQ.fa</b> - LoRDEC-corrected transcripts.<b>hq_isoforms.fasta.no5merge.collapsed.rep.fa</b> - Non-redundant isoforms.<br><b>cogent.fake_genome.fasta</b> and <b>cogent.fake_genome.gff</b> - Fake genome FASTA file and its corresponding GFF annotation.
DOI: 10.6084/m9.figshare.26537647.v2
title: Full-Length Transcriptome Analysis Reveals New Insights into the Immune System of Black Amur Bream (<i>Megalobrama terminalis</i>) Using PacBio Iso-Seq

description: The <i>Megalobrama</i> genus is economically significant in China, with <i>M. amblycephala </i>(Wuchang bream) being the most studied species due to its prominence. However, the immune system of <i>M. terminalis </i>(Black Amur bream), another species within the genus, remains underexplored despite its notable resistance to bacterial infections, including those caused by <i>Aeromonas hydrophila</i>. This study aimed to address this gap by conducting a comprehensive transcriptomic analysis of <i>M. terminalis</i>, focusing on immune-related genes. By employing a combination of PacBio Isoform Sequencing (Iso-Seq) and Illumina short-read sequencing, we identified and annotated 12,426 non-redundant isoforms, of which 11,872 were successfully annotated across multiple databases. The study also revealed 853 alternative splicing events, with retained introns being the most common type, and the identification of 672 transcription factors and 426 long non-coding RNAs. Importantly, we observed isoforms of several key immune-related genes, including alpha-2-macroglobulins, complement component 3, mannose-binding lectins, and those involved in the adaptive immune system, such as immunoglobulin heavy chains, and major histocompatibility complex (MHC) classes I and II. These findings offer valuable insights into the immune complexity of <i>M. terminalis</i> and reveal a sophisticated network of immune responses, providing a foundation for future research to enhance disease resistance in aquaculture. The study not only fills a critical knowledge gap but also has significant implications for improving the health and resilience of aquaculture stocks.<br><br><b>CorrectHQ.fa</b> - LoRDEC-corrected transcripts.<b>hq_isoforms.fasta.no5merge.collapsed.rep.fa</b> - Non-redundant isoforms.<br><b>cogent.fake_genome.fasta</b> and <b>cogent.fake_genome.gff</b> - Fake genome FASTA file and its corresponding GFF annotation.
DOI: 10.6084/m9.figshare.26537647.v1
title: Full-Length Transcriptome Analysis Reveals New Insights into the Immune System of Black Amur Bream (<i>Megalobrama terminalis</i>) Using PacBio Iso-Seq

description: The <i>Megalobrama</i> genus is economically significant in China, with <i>M. amblycephala </i>(Wuchang bream) being the most studied species due to its prominence. However, the immune system of <i>M. terminalis </i>(Black Amur bream), another species within the genus, remains underexplored despite its notable resistance to bacterial infections, including those caused by <i>Aeromonas hydrophila</i>. This study aimed to address this gap by conducting a comprehensive transcriptomic analysis of <i>M. terminalis</i>, focusing on immune-related genes. By employing a combination of PacBio Isoform Sequencing (Iso-Seq) and Illumina short-read sequencing, we identified and annotated 12,426 non-redundant isoforms, of which 11,872 were successfully annotated across multiple databases. The study also revealed 853 alternative splicing events, with retained introns being the most common type, and the identification of 672 transcription factors and 426 long non-coding RNAs. Importantly, we observed isoforms of several key immune-related genes, including alpha-2-macroglobulins, complement component 3, mannose-binding lectins, and those involved in the adaptive immune system, such as immunoglobulin heavy chains, and major histocompatibility complex (MHC) classes I and II. These findings offer valuable insights into the immune complexity of <i>M. terminalis</i> and reveal a sophisticated network of immune responses, providing a foundation for future research to enhance disease resistance in aquaculture. The study not only fills a critical knowledge gap but also has significant implications for improving the health and resilience of aquaculture stocks.
DOI: 10.6084/m9.figshare.26559959
title: Additional file 1 of Comparative network analysis reveals the dynamics of organic acid diversity during fruit ripening in peach (Prunus persica L. Batsch)

description: Additional file 1: Table S1. Gene expression data (FPKMs) used for principal component analysis.
DOI: 10.6084/m9.figshare.26559959.v1
title: Additional file 1 of Comparative network analysis reveals the dynamics of organic acid diversity during fruit ripening in peach (Prunus persica L. Batsch)

description: Additional file 1: Table S1. Gene expression data (FPKMs) used for principal component analysis.
DOI: 10.6084/m9.figshare.26559962
title: Additional file 2 of Comparative network analysis reveals the dynamics of organic acid diversity during fruit ripening in peach (Prunus persica L. Batsch)

description: Additional file 2: Table S2. Pearson correlation coefficients (PCCs) of acid-related gene pairs and all transcription factors.
DOI: 10.6084/m9.figshare.26559962.v1
title: Additional file 2 of Comparative network analysis reveals the dynamics of organic acid diversity during fruit ripening in peach (Prunus persica L. Batsch)

description: Additional file 2: Table S2. Pearson correlation coefficients (PCCs) of acid-related gene pairs and all transcription factors.
DOI: 10.15468/dl.fznu2t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.453216 -35.425765, 147.453216 -35.428011, 147.448724 -35.428011, 147.448724 -35.434749, 147.453216 -35.434749, 147.453216 -35.432503, 147.455462 -35.432503, 147.455462 -35.425765, 147.453216 -35.425765))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065031-240626123714530/datasets/export for details.
DOI: 10.15468/dl.sqkdxh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.385842 -35.434749, 147.385842 -35.436994, 147.392579 -35.436994, 147.392579 -35.434749, 147.385842 -35.434749))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065032-240626123714530/datasets/export for details.
DOI: 10.15468/dl.uwwvby
title: Occurrence Download

description: A dataset containing 2085 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ciconia nigra (Linnaeus, 1758)"
 ]
}

 The dataset includes 2085 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065034-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26560073
title: Additional file 4 of Anti-colorectal cancer of Ardisia gigantifolia Stapf. and targets prediction via network pharmacology and molecular docking study

description: Additional file 4. GO Analysis.
DOI: 10.6084/m9.figshare.26560103.v1
title: Additional file 2 of Alpha-B-Crystallin overexpression is sufficient to promote tumorigenesis and metastasis in mice

description: Additional file 2. Table S1. Correlation analysis.
DOI: 10.15468/dl.p8wvkw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.464445 -35.434749, 147.464445 -35.436994, 147.462199 -35.436994, 147.462199 -35.441486, 147.457707 -35.441486, 147.457707 -35.443732, 147.462199 -35.443732, 147.462199 -35.445978, 147.475674 -35.445978, 147.475674 -35.448223, 147.480165 -35.448223, 147.480165 -35.441486, 147.484657 -35.441486, 147.484657 -35.436994, 147.47792 -35.436994, 147.47792 -35.434749, 147.464445 -35.434749))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065035-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26559965.v1
title: Additional file 3 of Comparative network analysis reveals the dynamics of organic acid diversity during fruit ripening in peach (Prunus persica L. Batsch)

description: Additional file 3: Table S3. Pearson correlation coefficients (PCCs) of genes in C1+C20 gene set.
DOI: 10.6084/m9.figshare.26577422
title: Additional file 7 of Holobiont Urbanism: sampling urban beehives reveals cities’ metagenomes

description: Additional file 7. Metadata for all samples in MIXS format.
DOI: 10.6084/m9.figshare.26560073.v1
title: Additional file 4 of Anti-colorectal cancer of Ardisia gigantifolia Stapf. and targets prediction via network pharmacology and molecular docking study

description: Additional file 4. GO Analysis.
DOI: 10.6084/m9.figshare.26560064
title: Additional file 1 of Anti-colorectal cancer of Ardisia gigantifolia Stapf. and targets prediction via network pharmacology and molecular docking study

description: Additional file 1. Targetsof the compounds from Ardisia gigantifolia Stapf. against colorectal cancerbased on network searching.
DOI: 10.15468/dl.yvj3pj
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.118592 -35.468436, 147.118592 -35.470681, 147.120838 -35.470681, 147.120838 -35.468436, 147.118592 -35.468436))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065036-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gbdfz9
title: Occurrence Download

description: A dataset containing 1356 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((144.720078 -37.5458, 144.720078 -37.550291, 144.717833 -37.550291, 144.717833 -37.552537, 144.72457 -37.552537, 144.72457 -37.550291, 144.726816 -37.550291, 144.726816 -37.5458, 144.720078 -37.5458)), ((144.726816 -37.550291, 144.726816 -37.552537, 144.731307 -37.552537, 144.731307 -37.550291, 144.726816 -37.550291)))"
 ]
}

 The dataset includes 1356 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065037-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g6kpf2
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Garrulax milnei (David, 1874)"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065038-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.