cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8944865.v1
title: Table S4. Stable isotopes of Nonsulphide Zn–Pb ores in Britain and Ireland: fluid characteristics and paleoclimatic variability

description: Table S4. Miscellaneous chemical composition of selected smithsonites (Sm) and cerussites (Cer) from UK (SEM–EDS).
DOI: 10.6084/m9.figshare.8944871.v1
title: Table S3. Stable isotopes of Nonsulphide Zn–Pb ores in Britain and Ireland: fluid characteristics and paleoclimatic variability

description: Table S3. Chemical composition of selected smithsonites (Sm) and cerussites (Cer) from Ireland (SEM–EDS) analysed for C–O isotope compositions.
DOI: 10.6084/m9.figshare.8944106
title: Giroux data

description: Embodiment and kinesthesia scores (giroux et al )
DOI: 10.6084/m9.figshare.8944106.v1
title: Giroux data

description: Embodiment and kinesthesia scores (giroux et al )
DOI: 10.6084/m9.figshare.8943509
title: Georeferenced features of cultural ecosystem services in Sierra Nevada: a dataset based on social media photo content analysis

description: This dataset contains the results from the content analysis of Flickr photographs in the Sierra Nevada Biosphere Reserve (southern Spain), considering the main photographic focus on: fauna and flora or nature and landscape features, as well as on cultural, religious, rural, sport, gastronomy and recreation elements. Based on this first classification, we further classified each photo considering: (1) the type of prevailing sport activity, (2) the main nature and human features, and (3) the represented faunal groups.
DOI: 10.6084/m9.figshare.8943425
title: Supplementary Fig. 4- 7. Single-cell transcriptomics from PAX7null, PAX7pos, and PAX7neg myogenic cell colonies.

description: Data submitted<br>Input data for tsne and violin plots<br><br>
DOI: 10.6084/m9.figshare.8943371
title: Supplementary Fig. 3. Muscle regeneration after reinjury.

description: Data submitted<br>LSM immunohistochemistry pictures (unmodified)<br><br>
DOI: 10.6084/m9.figshare.8943338
title: Supplementary Fig. 2 (related to Fig. 1): Expression of myogenic and interstitial cell markers

description: Data submitted<br>qPCR data and calculation in excel file <br>Input data file for scatter plot SuppFigS2_scatter-plot_input.txt<br><br>
DOI: 10.6084/m9.figshare.8943341
title: Stream biofilm viromes

description: This dataset contains the raw counts of VLP and DNA yields used for benchmarking the efficiency of various protocols to obtain viromes from stream biofilms.
DOI: 10.6084/m9.figshare.8943371.v1
title: Supplementary Fig. 3. Muscle regeneration after reinjury.

description: Data submitted<br>LSM immunohistochemistry pictures (unmodified)<br><br>
DOI: 10.6084/m9.figshare.8943323
title: Analysis of polish newspapers

description: Imago 5.0 file with raw results of analysis
DOI: 10.6084/m9.figshare.8943338.v1
title: Supplementary Fig. 2 (related to Fig. 1): Expression of myogenic and interstitial cell markers

description: Data submitted<br>qPCR data and calculation in excel file <br>Input data file for scatter plot SuppFigS2_scatter-plot_input.txt<br><br>
DOI: 10.6084/m9.figshare.8943323.v1
title: Analysis of polish newspapers

description: Imago 5.0 file with raw results of analysis
DOI: 10.6084/m9.figshare.8943317
title: Figure 5 underlying data. Confocal line scans of R-GECO1.0 expressing HCM hiPSC-CMs

description: Confocal laser line scan Ca<sup>2+</sup> transient traces and kymographs of d30 hiPSC-CMs that express R-GECO1.0. Veh = Vehicle only, DanRan = 10 µM Dantrolene and Ranolazine.
DOI: 10.6084/m9.figshare.8943341.v2
title: Stream biofilm viromes

description: This dataset contains the raw counts of VLP and DNA yields used for benchmarking the efficiency of various protocols to obtain viromes from stream biofilms.
DOI: 10.6084/m9.figshare.8943341.v1
title: Stream biofilm viromes

description: This dataset contains the raw counts of VLP and DNA yields used for benchmarking the efficiency of various protocols to obtain viromes from stream biofilms.
DOI: 10.21954/ou.rd.8943305
title: Supplementary material for the thesis: Cues triggering formation and germination of resting stages in marine diatoms

description: Supplementary material for the thesis Pelusi, Angela (2019) Cues triggering formation and germination of resting stages in marine diatoms (http://oro.open.ac.uk/id/eprint/59260) <br><br> <b>DEGs.ods </b>The whole dataset of differentially expressed genes. During the experiment the marine diatom Chaetoceros socialis shifted from a vegetative phase to a resting one thanks to the nitrogen starvation. <br><b> Supplementary.ods </b>Genes referred to metabolic pathways discussed in Chapter 5. They were involved in the cell rearrangement during spore formation. <b><br></b>
DOI: 10.6084/m9.figshare.8943302
title: Datas EC app.xlsx

description: Body dissatisfaction is a major risk factor underlying vulnerability to eating disorders. Laboratory settings suggest that body dissatisfaction could be improved by using evaluative conditioning (EC). The present study evaluates the feasibility of using an EC app in everyday life and the effects of its use on body dissatisfaction. We designed a game-like app inspired by the Therapeutic Evaluative Conditioning app. 60 participants were randomly assigned to two conditions. Participants in the EC condition had to pair photographs of their own body with positive photographs, while participants in the neutral condition had to pair photographs of their own body with neutral photographs. We tested the effect of use of the app on body dissatisfaction, drive for thinness, self-esteem, mood and eating behaviors.<b><i> </i></b>Analysis revealed that participants in all conditions presented a significant decrease in body dissatisfaction and drive for thinness. However, contrary to our hypothesis, these reductions were not greater in the EC condition than in the neutral condition.<b><i> </i></b>This is the first study to evaluate the effects of an app-based EC intervention targeting body image. Results appear to be promising and the app could easily be implemented in an ecological setting as it is a low effort, attractive and accessible intervention. However, these findings do not support the idea that evaluative conditioning is responsible for the effects. Results are discussed.<b><i></i></b>
DOI: 10.21954/ou.rd.8943305.v1
title: Supplementary material for the thesis: Cues triggering formation and germination of resting stages in marine diatoms

description: Supplementary material for the thesis Pelusi, Angela (2019) Cues triggering formation and germination of resting stages in marine diatoms (http://oro.open.ac.uk/id/eprint/59260) <br><br> <b>DEGs.ods </b>The whole dataset of differentially expressed genes. During the experiment the marine diatom Chaetoceros socialis shifted from a vegetative phase to a resting one thanks to the nitrogen starvation. <br><b> Supplementary.ods </b>Genes referred to metabolic pathways discussed in Chapter 5. They were involved in the cell rearrangement during spore formation. <b><br></b>
DOI: 10.6084/m9.figshare.8943293
title: Figure 3. PAX7-negative cell populations can generate muscle.

description: Data submitted<br><br>LSM immunofluorescence pictures (unmodified)LSM immunohistochemistry pictures (unmodified)<br><br>
DOI: 10.6084/m9.figshare.8943287
title: Figure 2. Single-cell transcriptomics reveals different gene expression pattern in PAX7pos, PAX7neg, and PAX7null myogenic cells.

description: Data submitted<br>Input data for tsne and violin plots<br><br>
DOI: 10.6084/m9.figshare.8943296
title: Figure 4. CLEC14A is a marker for a human myogenic cell in satellite cell position.

description: Data submitted<br>LSM immunofluorescence pictures (unmodified)LSM immunohistochemistry pictures (unmodified)qPCR data and calculation in excel file<br><br>
DOI: 10.6084/m9.figshare.8943293.v1
title: Figure 3. PAX7-negative cell populations can generate muscle.

description: Data submitted<br><br>LSM immunofluorescence pictures (unmodified)LSM immunohistochemistry pictures (unmodified)<br><br>
DOI: 10.6084/m9.figshare.8943296.v1
title: Figure 4. CLEC14A is a marker for a human myogenic cell in satellite cell position.

description: Data submitted<br>LSM immunofluorescence pictures (unmodified)LSM immunohistochemistry pictures (unmodified)qPCR data and calculation in excel file<br><br>
DOI: 10.21954/ou.rd.8943281
title: Research data for the thesis Exploring diatoms functional and taxonomic diversity on a global scale through an integrative approach

description: Research data for the thesis Exploring diatoms functional and taxonomic diversity on a global scale through an integrative approach
DOI: 10.6084/m9.figshare.8943287.v1
title: Figure 2. Single-cell transcriptomics reveals different gene expression pattern in PAX7pos, PAX7neg, and PAX7null myogenic cells.

description: Data submitted<br>Input data for tsne and violin plots<br><br>
DOI: 10.21954/ou.rd.8943281.v1
title: Research data for the thesis Exploring diatoms functional and taxonomic diversity on a global scale through an integrative approach

description: Research data for the thesis Exploring diatoms functional and taxonomic diversity on a global scale through an integrative approach
DOI: 10.25392/leicester.data.8943173
title: Video and data files to accompany Patel & Matheson (2019) Journal of Experimental Biology

description: 'Patel-Matheson-JEB-data-files-for-upload.zip' contains pairs of .dat and .sup files, and calibration files used by the custom software 'Scratch Analysis' (also included) to generate various analyses of locust scratching movements.<br>'Patel-Matheson-JEB-avi-files-for-upload.zip' contains the corresponding video clips.<br>The data accompany the paper 'Patel AJ and Matheson T (2019) Aimed limb movements in a hemimetabolous insect are intrinsically compensated for allometric wing growth by developmental mechanisms. Journal of Experimental Biology.'<br>See further details in the read_me.txt files.
DOI: 10.6084/m9.figshare.8943176
title: Draft genomes of female and male turbot (Scophthalmus maximus)

description: Turbot (<i>Scophthalmus maximus</i>) is a commercially important species and is among the most produced flatfish in aquaculture. It has a drastic sexual dimorphism where females are larger. We sequenced and de novo assembled female and male genomes in the present study. Female_evm.gff3 is the annotation gff3 file of the female turbot’s assembled genome. turbot_Orthogroups.tsv is a list of the gene families generated in your analysis. turbot_TE.denovo.gff and turbot_TE.homo.gffare the repeat annotations. turbot_alignment.fasta is the alignment used for the phylogenetic analysis. turbot_phylogenetic.treefile is an output of phylogenetic tree.<b><br></b><b><br></b><br>
DOI: 10.6084/m9.figshare.8942831
title: Figure 1. Characterization of human desmin positive, PAX7- negative cell populations.

description: Data submitted<br>qPCR data and calculation in excel fileLSM immunofluorescence picture (unmodified)<br>
DOI: 10.25392/leicester.data.8943173.v1
title: Video and data files to accompany Patel & Matheson (2019) Journal of Experimental Biology

description: 'Patel-Matheson-JEB-data-files-for-upload.zip' contains pairs of .dat and .sup files, and calibration files used by the custom software 'Scratch Analysis' (also included) to generate various analyses of locust scratching movements.<br>'Patel-Matheson-JEB-avi-files-for-upload.zip' contains the corresponding video clips.<br>The data accompany the paper 'Patel AJ and Matheson T (2019) Aimed limb movements in a hemimetabolous insect are intrinsically compensated for allometric wing growth by developmental mechanisms. Journal of Experimental Biology.'<br>See further details in the read_me.txt files.
DOI: 10.6084/m9.figshare.8942831.v1
title: Figure 1. Characterization of human desmin positive, PAX7- negative cell populations.

description: Data submitted<br>qPCR data and calculation in excel fileLSM immunofluorescence picture (unmodified)<br>
DOI: 10.6084/m9.figshare.8943176.v1
title: Draft genomes of female and male turbot (Scophthalmus maximus)

description: Turbot (<i>Scophthalmus maximus</i>) is a commercially important species and is among the most produced flatfish in aquaculture. It has a drastic sexual dimorphism where females are larger. We sequenced and de novo assembled female and male genomes in the present study. Female_evm.gff3 is the annotation gff3 file of the female turbot’s assembled genome. turbot_Orthogroups.tsv is a list of the gene families generated in your analysis. turbot_TE.denovo.gff and turbot_TE.homo.gffare the repeat annotations. turbot_alignment.fasta is the alignment used for the phylogenetic analysis. turbot_phylogenetic.treefile is an output of phylogenetic tree.<b><br></b><b><br></b><br>
DOI: 10.6084/m9.figshare.8942738
title: Kickstarter rule changes over time.xlsx

description: A spreadsheet that tracks changes in Kickstarter's Guidelines, Rules, Prohibited Items and Terms and Conditions, over time. Please note that the rows for 3 December 2010 and 17 July 2019 are reliable. All other rows should be checked for completeness. <br>I created this data because I was interested in seeing how much Kickstarter had changed their rules around campaigns and rewards since launching. 3 December 2010 was the first archived version that I could find that didn't contain the words 'Beta' or 'by invitation'. 17 July 2019 was the date of collection of the data. <br>This was collected as part of a chapter about legal risk in crowdfunding.
DOI: 10.6084/m9.figshare.8942801
title: Supplementary Material for: Recent Survival Trends in High-Grade Neuroendocrine Neoplasms and Lung Cancer

description: <b><i>Background:</i></b> Poorly differentiated neuroendocrine neoplasms (pdNEN) are a rare cancer entity, treatment of which is to a great part informed by studies on the much more common small-cell lung cancer (SCLC). <b><i>Objective:</i></b> To reveal and compare recent survival trends for pdNEN and SCLC in an authorative, population-based database. <b><i>Methods:</i></b> Using the Surveillance, Epidemiology, and End Results 18 database, 3,482 digestive tract pdNEN and 30,383 SCLC diagnosed from 2000 through 2015 were analyzed in detail. <b><i>Results:</i></b> Whereas changes in one- and 2-year relative survival in pdNEN were small, improvements in median survival appeared consistent and relevant. For example, median survival (95% CI) for distant disease pdNEN diagnosed in 2000–2004, 2005–2009, and 2010–2015 was 4.6 (3.8–5.4), 5.6 (4.5–6.7), and 6.4 (5.4–7.5) months. Changes in SCLC survival during the study period overall were even more limited, which – in the case of distant disease – meant that survival disadvantages of patients with pdNEN as compared to SCLC disappeared during the study period. Unfortunately, relevant improvements in year-wise conditional survival after the first year since diagnosis essentially were restricted to localized pdNEN and localized SCLC. <b><i>Conclusions:</i></b> Our results should stipulate further research, in particular, of the pdNEN-SCLC relationship. They will also be helpful in patient care and communication, providing the first conditional survival details in this context, a highly patient-relevant outcome.
DOI: 10.6084/m9.figshare.8942801.v1
title: Supplementary Material for: Recent Survival Trends in High-Grade Neuroendocrine Neoplasms and Lung Cancer

description: <b><i>Background:</i></b> Poorly differentiated neuroendocrine neoplasms (pdNEN) are a rare cancer entity, treatment of which is to a great part informed by studies on the much more common small-cell lung cancer (SCLC). <b><i>Objective:</i></b> To reveal and compare recent survival trends for pdNEN and SCLC in an authorative, population-based database. <b><i>Methods:</i></b> Using the Surveillance, Epidemiology, and End Results 18 database, 3,482 digestive tract pdNEN and 30,383 SCLC diagnosed from 2000 through 2015 were analyzed in detail. <b><i>Results:</i></b> Whereas changes in one- and 2-year relative survival in pdNEN were small, improvements in median survival appeared consistent and relevant. For example, median survival (95% CI) for distant disease pdNEN diagnosed in 2000–2004, 2005–2009, and 2010–2015 was 4.6 (3.8–5.4), 5.6 (4.5–6.7), and 6.4 (5.4–7.5) months. Changes in SCLC survival during the study period overall were even more limited, which – in the case of distant disease – meant that survival disadvantages of patients with pdNEN as compared to SCLC disappeared during the study period. Unfortunately, relevant improvements in year-wise conditional survival after the first year since diagnosis essentially were restricted to localized pdNEN and localized SCLC. <b><i>Conclusions:</i></b> Our results should stipulate further research, in particular, of the pdNEN-SCLC relationship. They will also be helpful in patient care and communication, providing the first conditional survival details in this context, a highly patient-relevant outcome.
DOI: 10.6084/m9.figshare.8942675
title: supplementary2.docx

description: There is no difference in changes of motor impairment, corticospinal excitability and interhemispheric inhibition between patients receiving anodal transcranial direct current (tDCS) and sham
DOI: 10.6084/m9.figshare.8942738.v1
title: Kickstarter rule changes over time.xlsx

description: A spreadsheet that tracks changes in Kickstarter's Guidelines, Rules, Prohibited Items and Terms and Conditions, over time. Please note that the rows for 3 December 2010 and 17 July 2019 are reliable. All other rows should be checked for completeness. <br>I created this data because I was interested in seeing how much Kickstarter had changed their rules around campaigns and rewards since launching. 3 December 2010 was the first archived version that I could find that didn't contain the words 'Beta' or 'by invitation'. 17 July 2019 was the date of collection of the data. <br>This was collected as part of a chapter about legal risk in crowdfunding.
DOI: 10.6084/m9.figshare.8942675.v1
title: supplementary2.docx

description: There is no difference in changes of motor impairment, corticospinal excitability and interhemispheric inhibition between patients receiving anodal transcranial direct current (tDCS) and sham
DOI: 10.6084/m9.figshare.8942519
title: Scophthalmus_maximus.treefile

description: The outputs of constructed phylogenetic tree.
DOI: 10.6084/m9.figshare.8942519.v1
title: Scophthalmus_maximus.treefile

description: The outputs of constructed phylogenetic tree.
DOI: 10.6084/m9.figshare.8942414
title: Scophthalmus_maximus_alignment.fasta

description: The alignment is used for the phylogenetic analysis.
DOI: 10.6084/m9.figshare.8942414.v1
title: Scophthalmus_maximus_alignment.fasta

description: The alignment is used for the phylogenetic analysis.
DOI: 10.6084/m9.figshare.8942342
title: orthogroups.tsv

description: We clustered the genes into gene families of turbot and <i>D. rerio</i>, <i>G. aculeatus</i>,<i>O. latipes</i>,<i>T. rubripes</i>,<i>T. nigroviridis</i>,<i>C</i>. <i>Semilaevis</i>,<i>P. olivaceus </i>and<i>O. niloticus </i>using OrthoFinder2.
DOI: 10.6084/m9.figshare.8942351
title: Active drugs for GIOP

description: Active drugs for GIOP.
DOI: 10.6084/m9.figshare.8942351.v1
title: Active drugs for GIOP

description: Active drugs for GIOP.
DOI: 10.6084/m9.figshare.8942318
title: Supplementary Material for: Efficient Human Cytomegalovirus Replication in Primary Endothelial Cells Is SOCS3 Dependent

description: <b><i>Background:</i></b> In immunocompromised patients, human cytomegalovirus (HCMV) infection is a major cause of morbidity and mortality. Suppressor of cytokine signaling (SOCS) proteins are very potent negative regulators of the janus kinase/signal transducer and activator of transcription (JAK/STAT) pathways. We hypothesized that HCMV exploits SOCS1 and/or SOCS3 to its advantage. <b><i>Methods:</i></b> All experiments were carried out with primary human lung-derived microvascular endothelial cells (HMVEC). SOCS1 and SOCS3 were silenced by transfecting the cells with siRNA. HCMV was propagated and titered on human lung-derived fibroblasts MRC5. Real-time PCR and Western blot were used to detect mRNA and protein levels, respectively. <b><i>Results:</i></b> The data presented show that an efficient replication of HCMV in HMVEC is dependent on SOCS3 protein. Time course analysis revealed an increase in SOCS3 protein levels in infected cells. Silencing of SOCS3 (siSOCS3) resulted in inhibition of viral immediate early, early, and late antigen production. Consistently, HCMV titers produced by siSOCS3 cultures were significantly decreased when compared to control transfected cultures (siCNTRs). STAT1 and STAT2 phosphorylation was increased in siSOCS3-infected cells when compared to siCNTR-treated cells. <b><i>Conclusion:</i></b> These findings indicate the implication of SOCS3 in the mechanism of HCMV-mediated control of cellular immune responses.
DOI: 10.6084/m9.figshare.8942318.v1
title: Supplementary Material for: Efficient Human Cytomegalovirus Replication in Primary Endothelial Cells Is SOCS3 Dependent

description: <b><i>Background:</i></b> In immunocompromised patients, human cytomegalovirus (HCMV) infection is a major cause of morbidity and mortality. Suppressor of cytokine signaling (SOCS) proteins are very potent negative regulators of the janus kinase/signal transducer and activator of transcription (JAK/STAT) pathways. We hypothesized that HCMV exploits SOCS1 and/or SOCS3 to its advantage. <b><i>Methods:</i></b> All experiments were carried out with primary human lung-derived microvascular endothelial cells (HMVEC). SOCS1 and SOCS3 were silenced by transfecting the cells with siRNA. HCMV was propagated and titered on human lung-derived fibroblasts MRC5. Real-time PCR and Western blot were used to detect mRNA and protein levels, respectively. <b><i>Results:</i></b> The data presented show that an efficient replication of HCMV in HMVEC is dependent on SOCS3 protein. Time course analysis revealed an increase in SOCS3 protein levels in infected cells. Silencing of SOCS3 (siSOCS3) resulted in inhibition of viral immediate early, early, and late antigen production. Consistently, HCMV titers produced by siSOCS3 cultures were significantly decreased when compared to control transfected cultures (siCNTRs). STAT1 and STAT2 phosphorylation was increased in siSOCS3-infected cells when compared to siCNTR-treated cells. <b><i>Conclusion:</i></b> These findings indicate the implication of SOCS3 in the mechanism of HCMV-mediated control of cellular immune responses.
DOI: 10.6084/m9.figshare.8942228
title: Percentage of CF and CF-FM calls. from Unusual echolocation behaviour of the Common Sword-nosed bat <i>Lonchorhina aurita</i>: an adaptation to aerial insectivory in a phyllostomid bat?

description: Percentage of constant frequency (CF) calls compared to CF-FM (frequency modulated) calls
DOI: 10.6084/m9.figshare.8942231
title: Bandwidth of the constant frequency component (CF) from Unusual echolocation behaviour of the Common Sword-nosed bat <i>Lonchorhina aurita</i>: an adaptation to aerial insectivory in a phyllostomid bat?

description: Bandwidth of 10 CF calls from 10 individuals, calculated using the maximum and minimum peak frequency from the central section of each call.
DOI: 10.6084/m9.figshare.8942228.v1
title: Percentage of CF and CF-FM calls. from Unusual echolocation behaviour of the Common Sword-nosed bat <i>Lonchorhina aurita</i>: an adaptation to aerial insectivory in a phyllostomid bat?

description: Percentage of constant frequency (CF) calls compared to CF-FM (frequency modulated) calls
DOI: 10.6084/m9.figshare.8942231.v1
title: Bandwidth of the constant frequency component (CF) from Unusual echolocation behaviour of the Common Sword-nosed bat <i>Lonchorhina aurita</i>: an adaptation to aerial insectivory in a phyllostomid bat?

description: Bandwidth of 10 CF calls from 10 individuals, calculated using the maximum and minimum peak frequency from the central section of each call.