cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.4qzoqr
title: Occurrence Download

description: A dataset containing 82933 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Herbario Amazónico Colombiano"
 ]
}

 The dataset includes 82933 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041494-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.66pwhf
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brachionidium brevicaudatum Rolfe"
 ]
}

 The dataset includes 26 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148227-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.amkfk6
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Oncorhynchus mykiss gilberti (Jordan, 1894)"
 ]
}

 The dataset includes 16 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000852-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eakqur
title: Occurrence Download

description: A dataset containing 184 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Cremanthodium ellisii (Hook.fil.) Kitam. ex H.Hara et al."
 ]
}

 The dataset includes 184 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0270848-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s7yubb
title: Occurrence Download

description: A dataset containing 555 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Hylurgus ligniperda (J.C.Fabricius, 1787)"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 555 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041497-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wnfnpz
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Medicago saxatilis M.Bieb.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 17 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002172-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x834eg
title: Occurrence Download

description: A dataset containing 144759 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Carex paniculata L.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 144759 records from 640 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002171-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6xzj82
title: Occurrence Download

description: A dataset containing 27260 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Türkiye",
 "Geometry POLYGON((28.94248 36.61091,28.89078 36.4788,28.86781 36.24904,29.69496 35.69186,32.90592 35.76079,34.20983 36.0882,33.1127 37.5989,31.65944 37.97801,29.88451 37.78846,28.94248 36.61091))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 27260 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051437-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17922984
title: Roosts and movements of serotine bats (Cnephaeus serotinus)

description: These datasets contain information on autumn and winter roost locations of radio-tracked serotine bats (Cnephaeus serotinus) across an urban and a rural environment in the Netherlands. The studies were conducted between September 2020 and May 2022.

The data are provided in three separate files:

   1. Dataset related to serotine bat movements and ambient temperatures (.xlsx)

   2. Dataset with movement distances and wind directions (.xlsx)

   3. Dataset with roost locations and various building and landscape variables (.geojson)

These datasets were used to prepare a manuscript and provide detailed information on bat behaviour, environmental conditions, and building and landscape characteristics of roost presences and pseudoabsences.
DOI: 10.5281/zenodo.17922985
title: Roosts and movements of serotine bats (Cnephaeus serotinus)

description: These datasets contain information on autumn and winter roost locations of radio-tracked serotine bats (Cnephaeus serotinus) across an urban and a rural environment in the Netherlands. The studies were conducted between September 2020 and May 2022.

The data are provided in three separate files:

   1. Dataset related to serotine bat movements and ambient temperatures (.xlsx)

   2. Dataset with movement distances and wind directions (.xlsx)

   3. Dataset with roost locations and various building and landscape variables (.geojson)

These datasets were used to prepare a manuscript and provide detailed information on bat behaviour, environmental conditions, and building and landscape characteristics of roost presences and pseudoabsences.
DOI: 10.5281/zenodo.17923290
title: INSON IMMUNITET TIZIMINING ASOSIY KOMPONENTLARI VA ULARNING O'ZARO TA'SIRI: TIZIMLI TAHLIL
DOI: 10.5281/zenodo.17923289
title: INSON IMMUNITET TIZIMINING ASOSIY KOMPONENTLARI VA ULARNING O'ZARO TA'SIRI: TIZIMLI TAHLIL
DOI: 10.15468/dl.c5uhz4
title: Occurrence Download

description: A dataset containing 29756 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Apis mellifera",
 "Year 2025-2025"
 ]
}

 The dataset includes 29756 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051438-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dv66zd
title: Occurrence Download

description: A dataset containing 171 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Peru",
 "TaxonKey is Potamotrygon"
 ]
}

 The dataset includes 171 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051439-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17923294
title: CARDIAC MAGNETIC RESONANCE IMAGING IN THE EARLY DIAGNOSIS OF ISCHEMIC HEART DISEASE: A QUANTITATIVE CLINICAL AND STATISTICAL ANALYSIS
DOI: 10.5281/zenodo.17923295
title: CARDIAC MAGNETIC RESONANCE IMAGING IN THE EARLY DIAGNOSIS OF ISCHEMIC HEART DISEASE: A QUANTITATIVE CLINICAL AND STATISTICAL ANALYSIS
DOI: 10.15468/dl.mhd6rz
title: Occurrence Download

description: A dataset containing 11515 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Czechia",
 "Month is January",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 2020-2020"
 ]
}

 The dataset includes 11515 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051440-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23719/1532192
title: Metadata: A case-crossover analysis of short-term PM2.5 exposure and COVID19-related hospitalizations in the National COVID Cohort Collaborative

description: The dataset contains publicly available data on PM2.5 concentrations from air quality monitors as well as electronic health records from the National COVID Cohort Collaborative. The data is stored in tabular format.
DOI: 10.6084/m9.figshare.28563860
title: Clinical evaluation of HuDo-CSPG4 DNA electroporation as adjuvant treatment for canine oral malignant melanoma: comparison of two vaccination protocols

description: Canine oral malignant melanoma (OMM) is an aggressive, spontaneously occurring tumor carrying a poor to guarded prognosis and relatively limited therapeutic strategies. In this landscape, chondroitin sulfate proteoglycan (CSPG)4 represents a promising immunotherapeutic target. The objective of this bi-center prospective study was to examine the clinical outcome of OMM-bearing dogs treated with surgery and adjuvant electroporation using a DNA vaccine (HuDo-CSPG4) encoding both human (Hu) and canine (Do) portions of CSPG4 through two different vaccination protocols. Dogs with stage I-III surgically resected CSPG4-positive OMM underwent HuDo-CSPG4 plasmid electroporation starting at the 3<sup>rd</sup>-4<sup>th</sup> post-operative week; electrovaccination was repeated after 2 weeks. In protocol 1, electrovaccination was then delivered monthly while in protocol 2, electrovaccination was performed monthly four additional times followed by semestral boosters. The survival rates of HuDo-CSPG4-vaccinated dogs were estimated and compared with a control group treated with surgery alone. Significantly longer overall survival times were observed in HuDo-CSPG4 vaccinated dogs as compared with non-vaccinated controls. Dogs receiving protocol 2 showed similar outcomes to those of dogs undergoing protocol 1, despite fewer vaccinations. The comparable humoral response against CSPG4 resulting from the administration of protocol 1 and 2 appears to have similar clinical relevance, highlighting protocol 2 as the optimal vaccination schedule.
DOI: 10.6084/m9.figshare.28563860.v1
title: Clinical evaluation of HuDo-CSPG4 DNA electroporation as adjuvant treatment for canine oral malignant melanoma: comparison of two vaccination protocols

description: Canine oral malignant melanoma (OMM) is an aggressive, spontaneously occurring tumor carrying a poor to guarded prognosis and relatively limited therapeutic strategies. In this landscape, chondroitin sulfate proteoglycan (CSPG)4 represents a promising immunotherapeutic target. The objective of this bi-center prospective study was to examine the clinical outcome of OMM-bearing dogs treated with surgery and adjuvant electroporation using a DNA vaccine (HuDo-CSPG4) encoding both human (Hu) and canine (Do) portions of CSPG4 through two different vaccination protocols. Dogs with stage I-III surgically resected CSPG4-positive OMM underwent HuDo-CSPG4 plasmid electroporation starting at the 3<sup>rd</sup>-4<sup>th</sup> post-operative week; electrovaccination was repeated after 2 weeks. In protocol 1, electrovaccination was then delivered monthly while in protocol 2, electrovaccination was performed monthly four additional times followed by semestral boosters. The survival rates of HuDo-CSPG4-vaccinated dogs were estimated and compared with a control group treated with surgery alone. Significantly longer overall survival times were observed in HuDo-CSPG4 vaccinated dogs as compared with non-vaccinated controls. Dogs receiving protocol 2 showed similar outcomes to those of dogs undergoing protocol 1, despite fewer vaccinations. The comparable humoral response against CSPG4 resulting from the administration of protocol 1 and 2 appears to have similar clinical relevance, highlighting protocol 2 as the optimal vaccination schedule.
DOI: 10.6084/m9.figshare.28769580
title: <i>In vitro and in vivo</i> study on the effects of nutritive media compared with water on the resuscitation of a live attenuated <i>Salmonella</i> Typhimurium vaccine

description: In this study, a commercially available <i>Salmonella</i> Typhimurium vaccine (Vaxsafe ST) reconstituted in either water or nutrient broth, was tested to understand its effects on the <i>in vitro</i> invasion of Caco-2 cells and its transcriptional regulation post-reconstitution. Over time, the invasiveness of Vaxsafe ST was significantly higher following reconstitution in nutrient broth compared with water. Incubation temperature post-reconstitution did not significantly affect the invasion rate. Transcriptome data showed that Vaxsafe ST reconstituted in nutrient broth upregulated genes involved in the two-component system and flagella activity pathways; however, genes involved in host colonization and invasion were unaltered. Genes involved in host colonization and invasion were downregulated after reconstitution in water. Vaxsafe ST reconstituted in a nutritive diluent improved the metabolic activities of the vaccine. The animal experiment demonstrated that vaccine colonization was significantly higher in caeca compared with ileum irrespective of the diluent. Incubating the vaccine in nutrient broth for 30 min before administration did not significantly increase its colonization or organ invasion in chicks. Overall, the findings support the use of nutritive media for the reconstitution of Vaxsafe ST, warranting further investigation to optimize vaccine performance. This study provides a foundation for future work on vaccine reconstitution strategies.
DOI: 10.6084/m9.figshare.28769580.v1
title: <i>In vitro and in vivo</i> study on the effects of nutritive media compared with water on the resuscitation of a live attenuated <i>Salmonella</i> Typhimurium vaccine

description: In this study, a commercially available <i>Salmonella</i> Typhimurium vaccine (Vaxsafe ST) reconstituted in either water or nutrient broth, was tested to understand its effects on the <i>in vitro</i> invasion of Caco-2 cells and its transcriptional regulation post-reconstitution. Over time, the invasiveness of Vaxsafe ST was significantly higher following reconstitution in nutrient broth compared with water. Incubation temperature post-reconstitution did not significantly affect the invasion rate. Transcriptome data showed that Vaxsafe ST reconstituted in nutrient broth upregulated genes involved in the two-component system and flagella activity pathways; however, genes involved in host colonization and invasion were unaltered. Genes involved in host colonization and invasion were downregulated after reconstitution in water. Vaxsafe ST reconstituted in a nutritive diluent improved the metabolic activities of the vaccine. The animal experiment demonstrated that vaccine colonization was significantly higher in caeca compared with ileum irrespective of the diluent. Incubating the vaccine in nutrient broth for 30 min before administration did not significantly increase its colonization or organ invasion in chicks. Overall, the findings support the use of nutritive media for the reconstitution of Vaxsafe ST, warranting further investigation to optimize vaccine performance. This study provides a foundation for future work on vaccine reconstitution strategies.
DOI: 10.6084/m9.figshare.29163732
title: Neutralizing antibody levels as a key factor in determining the immunogenic efficacy of the novel PEDV alpha coronavirus vaccine

description: Porcine epidemic diarrhea virus (PEDV) causes significant global agricultural losses. Despite commercial inactivated and live attenuated vaccines, persistent outbreaks underscore the need for more effective solutions. Here, we isolated a novel Chinese PEDV variant, PEDV ShXXY2-2023, with amino acid substitutions in key neutralizing epitopes (N-terminal domain, receptor-binding domain, and CO-26K equivalent epitope) compared to vaccine strains. An inactivated ShXXY2-2023 vaccine induced higher neutralizing antibodies and superior cross-protection versus commercial vaccines. Vaccinated sows conferred enhanced protection to offspring, improving piglet survival post-challenge. Maternal serum neutralizing antibody titers correlated strongly with piglet survival; titers of 1:377–1:774 at one week prepartum yielded &gt;80% protective efficacy. These findings emphasize neutralizing antibodies’ critical role in PEDV prevention and position ShXXY2-2023 as a promising vaccine candidate, with broader implications for coronavirus vaccine development.
DOI: 10.6084/m9.figshare.29163732.v1
title: Neutralizing antibody levels as a key factor in determining the immunogenic efficacy of the novel PEDV alpha coronavirus vaccine

description: Porcine epidemic diarrhea virus (PEDV) causes significant global agricultural losses. Despite commercial inactivated and live attenuated vaccines, persistent outbreaks underscore the need for more effective solutions. Here, we isolated a novel Chinese PEDV variant, PEDV ShXXY2-2023, with amino acid substitutions in key neutralizing epitopes (N-terminal domain, receptor-binding domain, and CO-26K equivalent epitope) compared to vaccine strains. An inactivated ShXXY2-2023 vaccine induced higher neutralizing antibodies and superior cross-protection versus commercial vaccines. Vaccinated sows conferred enhanced protection to offspring, improving piglet survival post-challenge. Maternal serum neutralizing antibody titers correlated strongly with piglet survival; titers of 1:377–1:774 at one week prepartum yielded &gt;80% protective efficacy. These findings emphasize neutralizing antibodies’ critical role in PEDV prevention and position ShXXY2-2023 as a promising vaccine candidate, with broader implications for coronavirus vaccine development.
DOI: 10.6084/m9.figshare.28740642
title: Methodological rigour and reporting quality of the literature on wildlife rescue, rehabilitation, and release: a global systematic review

description: Wildlife rescue, rehabilitation, and release is a global practice with a broad body of scientific literature; nonetheless, no studies have assessed and quantified the methodological rigour and reporting quality of this literature. In this PRISMA systematic review, we assessed and quantified the reporting of controls, randomisation, blinding, experimental animal data, and housing and husbandry data in 152 primary studies on wildlife rescue, rehabilitation, and release published between 1980 and 2021. We then tested for associations between reporting and study characteristics. Of the 152 reviewed studies, one study reported a control, randomisation, and blinding; 17 studies reported species, age, sex, weight, and body condition; and 14 studies reported housing size, housing location, type of food, provision of water, and provision of enrichment. No study reported all 13 of these elements. Studies published in veterinary-focused journals reported lower methodological rigour and had lower reporting quality than studies published in other types of journals. Studies on mammals had higher reporting quality than studies on birds and on reptiles, and studies that included the word “welfare” had higher reporting quality than studies that did not. The overall low methodological rigour and reporting quality of the literature limits study replicability and applicability and impedes meta-analyses.
DOI: 10.6084/m9.figshare.28740642.v1
title: Methodological rigour and reporting quality of the literature on wildlife rescue, rehabilitation, and release: a global systematic review

description: Wildlife rescue, rehabilitation, and release is a global practice with a broad body of scientific literature; nonetheless, no studies have assessed and quantified the methodological rigour and reporting quality of this literature. In this PRISMA systematic review, we assessed and quantified the reporting of controls, randomisation, blinding, experimental animal data, and housing and husbandry data in 152 primary studies on wildlife rescue, rehabilitation, and release published between 1980 and 2021. We then tested for associations between reporting and study characteristics. Of the 152 reviewed studies, one study reported a control, randomisation, and blinding; 17 studies reported species, age, sex, weight, and body condition; and 14 studies reported housing size, housing location, type of food, provision of water, and provision of enrichment. No study reported all 13 of these elements. Studies published in veterinary-focused journals reported lower methodological rigour and had lower reporting quality than studies published in other types of journals. Studies on mammals had higher reporting quality than studies on birds and on reptiles, and studies that included the word “welfare” had higher reporting quality than studies that did not. The overall low methodological rigour and reporting quality of the literature limits study replicability and applicability and impedes meta-analyses.
DOI: 10.6084/m9.figshare.29237667
title: Longitudinal study on SARS-CoV-2 antibody responses in companion animals, Chile

description: SARS-CoV-2 infection susceptibility in dogs and cats has been documented, with identified risk factors contributing to transmission dynamics. Understanding viral prevalence and the evolution of emerging variants across pandemic waves can clarify the potential role of pets as reservoirs. This study evaluated 3298 serum samples (1921 dogs, 1377 cats) collected from 2020 to 2024. Samples were analyzed using ELISA and viral neutralization assays, revealing a positivity rate of 2.7%. We assessed neutralizing antibody titers (nAbs) against the Wuhan-Hu-1 and Omicron BA.1 strains, finding higher titers in felines compared to canines. A marked reduction in samples exceeding the detection limit was observed after November 2022. Longitudinal data from up to 30 months in a dog and 15 months in two cats demonstrated sustained antibody responses, with increased nAb titers in 7 of 14 monitored animals. Multivariable logistic regression of 275 samples indicated that a pet’s vaccination status was associated with an increased risk of infection, while spring season, the owner’s number of COVID-19 vaccinations, and the owner’s vaccination status were protective factors. These results emphasize the significance of vaccination strategies for both human and animal health, supporting the One Health approach.
DOI: 10.6084/m9.figshare.29237667.v1
title: Longitudinal study on SARS-CoV-2 antibody responses in companion animals, Chile

description: SARS-CoV-2 infection susceptibility in dogs and cats has been documented, with identified risk factors contributing to transmission dynamics. Understanding viral prevalence and the evolution of emerging variants across pandemic waves can clarify the potential role of pets as reservoirs. This study evaluated 3298 serum samples (1921 dogs, 1377 cats) collected from 2020 to 2024. Samples were analyzed using ELISA and viral neutralization assays, revealing a positivity rate of 2.7%. We assessed neutralizing antibody titers (nAbs) against the Wuhan-Hu-1 and Omicron BA.1 strains, finding higher titers in felines compared to canines. A marked reduction in samples exceeding the detection limit was observed after November 2022. Longitudinal data from up to 30 months in a dog and 15 months in two cats demonstrated sustained antibody responses, with increased nAb titers in 7 of 14 monitored animals. Multivariable logistic regression of 275 samples indicated that a pet’s vaccination status was associated with an increased risk of infection, while spring season, the owner’s number of COVID-19 vaccinations, and the owner’s vaccination status were protective factors. These results emphasize the significance of vaccination strategies for both human and animal health, supporting the One Health approach.