cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/thh2t7xrtb.2
title: Weakening of the summer monsoon over the past 150 years shown by a tree-ring record from Shandong, eastern China, and the potential role of North Atlantic climate

description:  The causes of the decreased intensity of the East Asian summer monsoon (EASM) over the past 150 years are still not fully understood, although several studies have linked the monsoon weakening to the warming of tropical oceans. Here, we use pine tree-rings to reconstruct the precipitation total for April–August from 1810 to 2018, in south-central Shandong Province, in the EASM region. The reconstruction accounts for 41.8% of the instrumental precipitation variance during 1965–2018. The EASM precipitation reconstruction shows extreme pluvial conditions in 1832, 1833, 1886 and 1998, and extreme droughts in 1878, 1901 and 1910, which correspond precisely to extreme climatic events recorded in historical documents. The reconstructed precipitation reveals a drying trend since the 1870s, which matches well with the decreasing trend of the EASM inferred from stalagmite oxygen isotope (δ18O) records and climate simulations. The trend of decreasing precipitation since the 1870s, indicated by our reconstruction, is significantly correlated with the spring sea surface temperature (SST) of the North Atlantic Ocean, which suggests that the EASM weakening was linked to North Atlantic SST variations during the past 150 years. This potential role of North Atlantic SST variability is supported by climate sensitivity simulations of the Community Earth System Model (CESM). North Atlantic SST variability induces two teleconnections of Rossby-like wave propagation from the North Atlantic into East Asia, resulting in anomalous precipitation in this region.
DOI: 10.25380/iastate.21259206.v1
title: Data For: Diversifying and Perennializing Plants in Agroecosystems Alters Retention of New C and N from Crop

description: These data are soil, CO2 efflux, dissolved organic carbon leaching, and various other measures from a mesocosm experiment performed in long-term (12-years) crop diversity experiment near Hickory Corners, MI, United States.Briefly, we tracked dual-labelled (13C and 15N), isotopically enriched wheat (<em>Triticum aestivum</em>) residue <em>in situ</em> for two years as it decomposed in three agroecosystems: maize-soybean rotation (CS), maize-soybean-wheat plus red clover and cereal rye cover crops (CSW2), and spring fallow management with regeneration of natural grassland species (7-10 species; SF). We measured losses of wheat residue (Cwheat and Nwheat) in leached soil solution and greenhouse gas fluxes, as well as how much was recovered in microbial biomass and bulk soil at 5-cm increments down to 20 cm. COLLECTION INFORMATION: <strong>Time period(s):</strong> 2011 to 2013 <strong>Location(s):</strong> Hickory Corners, MI, United States <strong>Long-term Experiment:</strong> Cropping Biodiversity Gradient Experiment <strong>Further Site Information: </strong>https://lter.kbs.msu.edu/research/long-term-experiments/biodiversity-gradient/
DOI: 10.5066/p942ql23
title: Supporting data for and predictions from streamflow permanence modeling in Mount Rainier National Park and surrounding area, Washington, 2018-2020

description: This data release contains spatially gridded geospatial data (rasters), R scripts, and supporting files to run Random Forest models to predict the probability of late summer surface flow in Mount Rainier and surrounding area in Washington State for 2018&ndash;20. Gridded geospatial data that describes the physical conditions of Mount Rainier National Park and surrounding area are used to refine the existing PRObability of Streamflow PERmanence (PROSPER) model (Jaeger and others, 2019). All data processing and analysis were scripted with R (version 4.0.4; https://www.r-project.org/) and was executed from the RStudio GUI (version 1.4.1103; https://www.rstudio.com/). R scripts to prepare the geospatial data, develop random forest models, and provide predictions are contained within &ldquo;MORA_Source_Code.zip&rdquo;. Geospatial data and supporting files used in these scripts are contained within &quot;MORA_Model_Inputs.zip&quot;. Predictions and a suitability grid are contained within &quot;MORA_Model_Outputs.zip.&quot; Jaeger K, Sando R, McShane R, Dunham J, Hockman-Wert D, Kaiser K, Hafen K, Risley J, Blasch K. 2019. Probability of Streamflow Permanence Model (PROSPER): A spatially continuous model of annual streamflow permanence throughout the Pacific Northwest. Journal of Hydrology X, 2: 100005. First posted - 2022-05-13 Revision posted - xxxxxxx Changes in Version 2.0 This dataset includes changes to the following files 1) MORA_Model_Inputs that include replacement of monthly climatic FCPGs with seven-month summary of climatic FCPGs, 2) MORA_Source_Code to account for these changed model inputs, and additional covariate correlation analysis, and 3) MORA_Model_Outputs include all new probability prediction rasters from the revised model.
DOI: 10.5066/p95l5add
title: Supporting Spatial Data for Sediment Studies in the Bogachiel and Calawah River Watersheds, Washington

description: This Data Release provides spatial data to support analysis of land cover change and channel width change in the Bogachiel and Calawah River basins, Washington. This supports a larger analysis that quantifies suspended-sediment yields for the two basins for water years 1977-1978 and more recently, for water years 2019-2021. Collectively the study evaluates influences of hydrology, geology, fire, and land cover change on suspended-sediment yields. The metadata file describes the Data Release structure, but briefly, this Data Release includes zipped files of: 1. Historical imagery for the Bogachiel and Calawah River basins, 2. shapefiles of digitized centerline, active channel areas, and cleared areas for the two river basins, 3. shapefiles of digitized centerline and active channel areas for subreaches, and 4. a shapefile of the approximate spatial extent of the Forks Fire.�� Associated suspended-sediment data can be found in the following Data Release: Anderson, SW, Jaeger, KL, Rasmussen, N, Seguin, CM, Wilkerson, OA, and Curran, CA, 2022, Suspended-Sediment Data for the Bogachiel and Calawah Rivers, WA for Water Years 2019-2021: U.S. Geological Survey data release, https://doi.org/10.5066/P9YT9CN2.
DOI: 10.5281/zenodo.7788632
title: Bicelle size and lipid/surfactant ratio screening - Gwalp tail anchor dimer simulation - 60 Lipids - q0.38 - PBS neutralized - CHARMM36m - 310K - OPC water model

description: Bicelle size and lipid to surfactant ratio screening to investigate the influence on spin relaxation data with monomers of a given peptide.
DOI: 10.6084/m9.figshare.21214889
title: Supplementary Material for: Examination of the Healthy Caregiver Effect among Older Adults: Findings from the Canadian Longitudinal Study on Aging

description: <b><i>Introduction:</i></b> The Healthy Caregiver Hypothesis (HCH) suggests that caregiving is associated with beneficial health impacts for family caregivers. However, mixed results have been reported, particularly when different levels of caregiving intensity were examined. This study analyzes the relationship between caregiving intensity and three health indicators (functional health, chronic illness, and self-rated general health) among Canadian older adults over 3 years. <b><i>Methods:</i></b> We drew upon a subsample of 11,344 participants aged 65 years and older from the Baseline and Follow-up 1 data of the Canadian Longitudinal Study on Aging and used linear mixed models to test the hypothesis based on different levels of caregiving intensity. <b><i>Results:</i></b> Older adults who provided low-intensity care recently or continuously reported better functional health and self-rated health than noncaregivers. In contrast, older adults with low-intensity caregiving responsibility reported more chronic conditions over time compared to noncaregivers, but this association was not found for high-intensity caregivers. <b><i>Discussion/Conclusion:</i></b> This study elucidates the HCH by incorporating caregiving intensity to understand patterns of better functional health and perceived health but more chronic conditions. The findings yielded from different health indicators suggest the impact of caregiving on health may be domain specific.
DOI: 10.6084/m9.figshare.21284676
title: Supplementary Material for: Association of Delirium Incidence with Visitation Restrictions due to COVID-19 Pandemic in Patients with Acute Cerebrovascular Disease in a Stroke-Unit Setting: A Retrospective Cohort Study

description: <b><i>Introduction:</i></b> Hospitals around the world introduced considerable visitation restrictions to reduce risk of infection during epidemic spread of SARS-CoV2. Understanding of negative impacts of visitation restrictions on subgroups of patients may help to balance and adjust policies accordingly or introduce further measures to mitigate their impact. We aimed to investigate the association of visitation restrictions with delirium incidence in stroke-unit patients. <b><i>Methods:</i></b> In a non-randomized observational design, data from 5,779 stroke-unit cases with transient ischemic attack or stroke (ischemic/hemorrhagic) admitted between January 2017 and November 2021 were compared between three groups depending on visitation policy implemented at time of admission: pandemic-associated absolute visitation restriction (<i>n</i> = 1,087), limited visitation policy (<i>n</i> = 862), and pre-pandemic visitation policy (<i>n</i> = 3,830). Univariate comparison and multiple logistic regression analyses were conducted to evaluate the association of delirium with visitation restrictions. <b><i>Results:</i></b> We observed delirium incidences of 6.3% during pandemic-associated absolute visitation restriction, 5.8% with limited visitation policy, and 5.1% with pre-pandemic visitation policy (<i>p</i> = 0.239). In multiple logistic regression analyses adjusting for clinically relevant variables, we found the presence of any pandemic-associated visitation restriction (odds ratio [OR] 1.363, 95% confidence interval [CI]: 1.066–1.744, <i>p</i> = 0.014) and specifically absolute visitation restriction (OR 1.368, 95% CI: 1.016–1.843, <i>p</i> = 0.039) independently associated with delirium in patients with acute cerebrovascular disease. Other factors independently associated with delirium were older age, male sex, stroke versus transient ischemic attack, acute infection, history of dementia, and longer duration of hospital stay. <b><i>Conclusion:</i></b> Pandemic-associated visitation restrictions and specifically absolute visitation restrictions are associated with a higher incidence of delirium among stroke-unit patients with acute cerebrovascular disease. Benefit and harm of visitation restrictions should be carefully weighed and adjustments considered for patients otherwise at increased risk for delirium.
DOI: 10.6084/m9.figshare.21286254
title: Supplementary Material for: Oral and Rectal Colonization by Antimicrobial-Resistant Gram-Negative Bacteria and Their Association with Death among Residents of Long-Term Care Facilities: A Prospective, Multicenter, Observational, Cohort Study

description: <b><i>Introduction:</i></b> The prevalence of antimicrobial-resistant bacteria (ARB) in long-term care facilities (LTCFs) remains unclear. Furthermore, the effect of ARB colonization on the clinical outcomes of LTCF residents has not been explored. <b><i>Methods:</i></b> We conducted a prospective multicenter cohort study and investigated the residents (<i>N</i> = 178) of six Japanese LTCFs (three Welfare Facilities for the Elderly Requiring Long-term Care and three Geriatric Health Service Facilities) for oral and rectal carriage of ARB. The clinical outcomes of the residents were evaluated based on isolating bacterial strains and subjecting them to whole-genome sequencing. <b><i>Results:</i></b> Of the 178 participants, 32 belonging to Geriatric Health Service Facilities with no information on their clinical outcome were excluded, and the remaining 146 were followed up for at most 21 months. Extended-spectrum β-lactamases (ESBL)-producing Enterobacterales and <i>Pseudomonas aeruginosa</i> were detected in 42.7% (<i>n</i> = 76) and 2.8% (<i>n</i> = 5) of the rectal swabs and 5.6% (<i>n</i> = 10) and 3.4% (<i>n</i> = 6) of the oral swabs, respectively. Detection of ARB in the oral and rectal cavities showed remarkable association with enteral nutrition. Further, <i>P. aeruginosa</i> was significantly associated with an increase in mortality of the residents, but there were not significant association between ESBL-producing Enterobacterales and mortality. Core-genome phylogeny of <i>P. aeruginosa</i> revealed a wide-spread distribution of the isolated strains across the phylogeny, which included a cluster of ST235 strains with substantially higher biofilm formation ability than the other isolated <i>P. aeruginosa</i> strains. <b><i>Discussion/Conclusion:</i></b> This study is the first to investigate the carriage of both oral and rectal ARB, genomic relatedness and determinants of antimicrobial resistance in isolated strains, and clinical outcomes of LTCF residents. Our study provides the first direct evidence for the burden of antimicrobial resistance in LTCFs.
DOI: 10.6084/m9.figshare.21673871
title: Supplementary Material for: Effects of Sprayable, Highly Adhesive Hydrophobized Gelatin Microparticles on Endoscopic Submucosal Dissection: A Swine Model

description: <b><i>Introduction:</i></b> Sprayable wound dressings containing hydrophobized microparticles (hMPs) are characterized by strong adhesiveness. We examined the effect of hMPs derived from Alaska pollock gelatin on endoscopic submucosal dissection (ESD) ulcers. <b><i>Methods:</i></b> (1) In an in vivo model of miniature swine gastric ESD, gastric ulcers were created by ESD and then sprayed with hMPs or untreated followed by microscopic examination. (2) In an ex vivo ESD model of resected stomach, a pinhole-shaped perforation was created on the ESD ulcer of resected stomach; hMPs were then sprayed on the perforation; and air leakage and intragastric pressure were measured. (3) In an in vivo duodenal ESD model of miniature swine, duodenal artificial ESD ulcers with pinhole-shaped perforation were examined; ulcers were classified into hMPs-sprayed and nonsprayed groups, and inflammation in the intrinsic muscle layer and serosa were compared between the groups. <b><i>Results:</i></b> (1) Histological observation of submucosal tissues showed a decreased number of invading inflammatory cells in hMP-sprayed tissues compared with the control in miniature swine gastric ESD (<i>p</i> &lt; 0.05). In addition, the rates of anti-alpha smooth muscle actin and type I collagen positivity were significantly lower in the hMPs group than in the control group (<i>p</i> &lt; 0.05). (2) Intragastric pressure could not be measured in the nonsprayed group, whereas no air leakage was observed in the sprayed group when pressurized up to 26 mm Hg in the resected stomach model. (3) The sprayed group showed suppressed inflammation of the intrinsic muscular layer and serosa in both cases compared with the nonsprayed group in miniature swine duodenal ESD (<i>p</i> &lt; 0.05). <b><i>Conclusions:</i></b> Sprayable, tissue-adhesive hMPs are a promising medical material for intraoperative and postoperative treatment of ESD-induced wound via anti-inflammation and strong adhesiveness.
DOI: 10.17632/2n9btyxmy3.1
title: Dataset of Pediatric Quality of Life (PedsQL) Scores for children with paediatric chronic functional constipation. 

description: Demographic (age, sex, type of birth, type of lactation) and Pediatric Quality of Life Inventory (PedsQL) questionnaire data collected for a pilot randomized controlled trial in different stages of the treatment, with a difference of years between the first and the last test data collected.
DOI: 10.5257/imf/weo/2021-04
title: World Economic Outlook (WEO) (April 2021 Edition)

description: The World Economic Outlook (WEO) database contains selected macroeconomic data series from the statistical appendix of the World Economic Outlook report, which presents the IMF staff's analysis and projections of economic developments at the global level, in major country groups and in many individual countries.
DOI: 10.5281/zenodo.7788631
title: Bicelle size and lipid/surfactant ratio screening - Gwalp tail anchor dimer simulation - 60 Lipids - q0.38 - PBS neutralized - CHARMM36m - 310K - OPC water model

description: Bicelle size and lipid to surfactant ratio screening to investigate the influence on spin relaxation data with monomers of a given peptide.
DOI: 10.17632/26td6trhmg.3
title: Data on Lung and Intestinal Microbiome in Ageing Rats exposed to Air Pollution

description: This dataset reflects the lung and intestinal microbiome in Fischer 344 ageing rats exposed to traffic-related air pollution for 3 months. Data here include lung and intestinal microbiome identified by analysing the 16S ribosomal (r)RNA gene amplified with specific primers, including Illumina sequencing adapters and sample-specific barcodes, and sequenced on an Illumina MiSeq sequencer.
DOI: 10.17632/bpf29cj2ny.1
title: Pore clogging growth behaviors in column scale experiment

description: This dataset consists of X-ray images that capture the growth process of pore clogging and data analyzed to visualize it. Suspended fine particles(powdered activated carbon; Yakuri co., Kyoto, Japan) with water are flown through a water-saturated sand pack(Ottawa 20/30 sand; U.S. Silica, Frederick, MD, U.S.A.). Clogging growth behaviors in uniformly packed beds are monitored with X-ray CT. A series of column experiments are conducted with X-ray computed tomography (X-ray CT) imaging while varying the flow velocity. The experiment consisted of 6 groups, 3 of which were named LS group, and three were named HS group. Throughout clogging growth, the patterns of clogging are visualized with X-ray CT image analysis. Each longitudinal and horizontal clogging growth behavior is presented as the spatial distribution of mass in the column.
-This includes the X-ray CT images for Test1, and links to the datasets of the remaining Test2 to Test6 images.
DOI: 10.5281/zenodo.7492868
title: Data Set: Single-well pore pressure preconditioning for Enhanced Geothermal System stimulation

description: This is the Python code and plotted figure data used to create the figures for the submitted manuscript, "Single-well pore pressure preconditioning for Enhanced Geothermal System stimulation" submitted to JGR: Solid Earth in 2022. The manuscript concerns a novel technique developed for EGS stimulation, called pore pressure or effective normal stress preconditioning, which preemptively alters the stress field along a fault prior to injection, such that the risk of induced seismicity is reduced. Using a slightly altered version of a preexisting model (a combination of an analytical pore pressure model and a linear slip weakening seismicity model) the effect of this kind of treatment is evaluated.
DOI: 10.7298/mwfw-hf34
title: Data from: An approach to sulfate geoengineering with surface emissions of carbonyl sulfide
DOI: 10.5281/zenodo.2585684
title: Data for Figs. 5 and 9 of arXiv:1812.09293

description: MadGraph5 <strong>parameter cards</strong> (i.e. SLHA files) and MadAnalysis5 <strong>CLs summaries</strong> for the scan points used to define the 95% CL exclusion contours in the gluino vs. squark mass plane, for scenarios DG1, DG2, DG3 and MSSM1 presented in Figure 5 as well as  scenarios DG4 and MSSM4 presented in Figure 9 of the paper "LHC limits on gluinos and squarks in the minimal Dirac gaugino model", arXiv:1812.09293.
description: {"references": ["Guillaume Chalons, Mark D. Goodsell, Sabine Kraml, Humberto Reyes-Gonz\u00e1lez, Sophie L. Williamson, arXiv:1812.09293 [hep-ph]"]}
DOI: 10.5281/zenodo.6308873
title: Understanding Digits in Identifier Names: An Exploratory Study

description: This is the dataset that accompanies the study: "<strong>Understanding Digits in Identifier Names: An Exploratory Study</strong>." This study has been accepted for publication at: The 1<sup>st</sup> International Workshop on Natural Language-based Software Engineering (NLBSE 2022). <strong><em>Following is the abstract of the study:</em></strong> Before any software maintenance can occur, developers must read the identifier names found in the code to be maintained. Thus, high-quality identifier names are essential for productive program comprehension and maintenance activities. With developers free to construct identifier names to their liking, it can be difficult to automatically reason about the quality and semantics behind an identifier name. Studying the structure of identifier names can help alleviate this problem. Existing research focuses on studying words within identifiers, but there are other symbols that appear in identifier names-- such as digits. This paper explores the presence and purpose of digits in identifier names through an empirical study of 800 open-source Java systems. We study how digits contribute to the semantics of identifier names and how identifier names that contain digits evolve over time through renaming. We envision our findings improving the efficiency of name appraisal and recommendation tools and techniques.
description: This study is part of the work conducted by the Source Code Analysis And Natural Language Laboratory. For more information about what we do and to download the preprint of this study, visit: https://scanl.org/
DOI: 10.5281/zenodo.7471426
title: Dataset for "Evolving scattering networks for engineering disorder"

description: The design of stealthy hyperuniform materials has been a critical topic in realizing bandgap materials without crystalline order. Most previous approaches to constructing SHU materials, such as the collective coordinate method, have assumed the closed system, maintaining the number of particles inside a system during the design process. Here, I upload the dataset for the concept of evolving wave networks. The datasets are applied to introduce the concept of evolving wave networks (dataset for Fig. 2), classify material states according to network parameters (dataset for Fig. 3), generate the stealthy hyperuniformity (SHU) shielding of existing materials (dataset for Fig. 4), realize preferential attachment in evolving wave networks (dataset for Fig. 5), and obtain the following phase diagram of disordered materials (dataset for Fig. 6). raw_data_FigXabc: the file represents the data for the figure X and abc denotes the sub-figure number. raw_data_Fig6_alpha_MMM: the file represents the data for figure 6: SHU states, and MMM denotes the value of alpha that determines the preference / anti-preference. raw_data_Fig6_Crystal_NNN: the file represents the data for figure 6: Crystal states, and NNN denotes the particle number. raw_data_Fig6_Poisson: the file represents the data for figure 6: Poisson state. Each file is composed of two-column data, representing (x,y) positions of particles. While each realization possesses 500 particles (500 row data), [raw_data_Fig3adgj], [raw_data_Fig3behk], [raw_data_Fig4a], [raw_data_Fig4b], [raw_data_Fig4c], [raw_data_Fig4d], [raw_data_Fig4e], [raw_data_Fig4f], [raw_data_Fig5abc], [raw_data_Fig5def], and [raw_data_Fig5ghi] include the data for 100 realizations: 50000 row data. In the data for Fig. 6, the SHU and Poisson states also possess 50000 row data with 100 realizations, while the crystal states have 500 row data with 1 realization.
description: This is the raw dataset for the manuscript "Evolving scattering networks for engineering disorder", which is under AIP (Acceptance in Principle) in Nature Computational Science.
DOI: 10.21232/b5uxd859
title: 2018 Cedar Creek pressed leaves

description: null