cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20943256
title: mcr-1 regulatory variants

description: Associated paper: <strong>Regulatory fine-tuning and horizontal gene transfer stabilize mobile colistin resistance </strong> Lois Ogunlana, Liam P. Shaw, Divjot Kaur, Pramod Jangir, Timothy Walsh, Stephan Uphoff, and R.C. MacLean. Preprint version: https://doi.org/10.1101/2022.11.04.515217 <br> Abstract: Antibiotic resistance carries fitness costs, making it difficult to understand how resistance can be stably maintained in pathogen populations over the long term. Here we investigate this problem in the context of mcr-1, a costly gene that confers resistance to the ‘last-resort’ antibiotic colistin in E. coli. Here we show that regulatory evolution has fine-tuned the expression of mcr-1, allowing E. coli to offset the cost of mcr-1 while simultaneously increasing colistin resistance. Conjugative plasmids have transferred low cost mcr-1 alleles across an incredible diversity of E. coli strains, further stabilizing mcr-1 at the species level. Crucially, regulatory mutations were associated with an increased stability of mcr-1 in pigs farms following a ban on the use of colistin as a growth promoter that decreased colistin consumption by 90%. Our study shows how the rapid evolution and horizontal transmission of resistance genes can combine to stabilize resistance and compromise the efficacy of interventions aimed at reducing AMR by limiting consumption. <br> This repository archives a stable version of https://github.com/liampshaw/mcr1-regulatory-variants/ (as of 28/03/2023, commit 997a7c88636589147d76a7fd4cd9c08e89825dc8). It also contains assemblies.zip which contains all assemblies archived (these are missing from github due to file size). <br> For more information on files, see README.md
DOI: 10.18712/nsd-nsd0027-v2
title: Study on Work, Attitudes Concerning Soscial Benefits, Pensions and Unemployment, 1984

description: Many of the projects in the social science research field that have been funded by the Research Council collect data from sample investigations. In order to coordinate and utilize technical and financial resources in a better way, NAVF's coordination committee for interviews was created in January of 1983. The committee would we responsible for conducting surveys in which researchers and scientists could apply to take part in a shared program. In 1984 the committee decided to perform a pilot project with Statistics Norway. Five projects from difference research groups participated with questions in a supplementary survey for Statistics Norway's Labour Force Survey (AKU) 3rd quarter 1984. The purpose of this was to test the possibility of creating a Norwegian General Social Survey, an omnibus survey for research purposes. The intention was to provide data concerning various aspects of the population's employment, occupational mobility and the family provider's profession. Another goal was to illustrate how different groups view different occupations in situations such as recommending them to young persons, the occupation's reputation and social influence. The project also included a section regarding opinions on using social benefits, national insurance and the fear of unemployment.
DOI: 10.6084/m9.figshare.21620983
title: Economic evaluation of plerixafor addition in the mobilization and leukapheresis of hematopoietic stem cells for autologous transplantation: a systematic review

description: Although plerixafor in association with granulocyte colony-stimulating factor (G-CSF) can improve mobilization and collection of hematopoietic stem cells (HSC) by leukapheresis, cost may limit its clinical application. The present study systematically reviews economic evaluations of plerixafor plus G-CSF usage compared to G-CSF alone and compares different strategies of plerixafor utilization in multiple myeloma and lymphoma patients eligible for autologous HSC transplantation. Relevant economic evaluations, partial or complete, were searched on PubMed, Embase, LILACS, and Cochrane Central Register of Controlled Trials for a period ending 30 June 2021. This systematic review was reported following the PRISMA Statement. Six economic evaluations were included, considering the use of upfront or just-in-time plerixafor compared to G-CSF alone or other plerixafor strategies. Most comparisons showed both increased cost and health benefits with the addition of plerixafor. Most analyses favored just-in-time plerixafor compared to upfront plerixafor, with a probable preference for broader cutoffs for just-in-time plerixafor initiation. Plerixafor is a potentially cost-effective technology in the mobilization of HSC in patients with multiple myeloma and lymphomas eligible for autologous HSC transplantation. There is a decreased number of leukapheresis sessions and remobilizations and a higher yield of CD34+ cells.
DOI: 10.6084/m9.figshare.21620983.v1
title: Economic evaluation of plerixafor addition in the mobilization and leukapheresis of hematopoietic stem cells for autologous transplantation: a systematic review

description: Although plerixafor in association with granulocyte colony-stimulating factor (G-CSF) can improve mobilization and collection of hematopoietic stem cells (HSC) by leukapheresis, cost may limit its clinical application. The present study systematically reviews economic evaluations of plerixafor plus G-CSF usage compared to G-CSF alone and compares different strategies of plerixafor utilization in multiple myeloma and lymphoma patients eligible for autologous HSC transplantation. Relevant economic evaluations, partial or complete, were searched on PubMed, Embase, LILACS, and Cochrane Central Register of Controlled Trials for a period ending 30 June 2021. This systematic review was reported following the PRISMA Statement. Six economic evaluations were included, considering the use of upfront or just-in-time plerixafor compared to G-CSF alone or other plerixafor strategies. Most comparisons showed both increased cost and health benefits with the addition of plerixafor. Most analyses favored just-in-time plerixafor compared to upfront plerixafor, with a probable preference for broader cutoffs for just-in-time plerixafor initiation. Plerixafor is a potentially cost-effective technology in the mobilization of HSC in patients with multiple myeloma and lymphomas eligible for autologous HSC transplantation. There is a decreased number of leukapheresis sessions and remobilizations and a higher yield of CD34+ cells.
DOI: 10.34740/kaggle/dsv/5255194
title: 2022-2023 Top 5 Football Leagues Player Stats
DOI: 10.6084/m9.figshare.22347574
title: Trained PriLer models on European ancestry individuals

description: Prior learned elastic-net regression (PriLer) gene expression models trained on reference panels GTEx v6p and CMC release 1. Inside each folder, "genotype_info/" include tab-separated files divided per chromosome with info on variants used to train the models. "tissues/" include trained models divided per tissue. In the corresponding folders,<strong> resPrior_regEval_allchr.txt</strong> is a tab-separated file with summary statistics of trained model for each gene, sorted by chromosome and position. <strong>resPrior_regCoeffSnps_allchr.RData </strong>is an RData object including a Sparse Matrix per chromosome n. variants x n. of genes with trained regression coefficients. Variants position match genotype files and gene position match gene summary statistic order (divided per chromosome). <strong>ENSEMBL_gene_SNP_2e+05_chrxx_matrix.mtx </strong>are sparse 0/1 matrices per chromosome n. variants x n. of genes that represent gene-variant distance matrices. For each gene, 1 indicates a variant being located in the transcription starting site window +/- 200kb. To use the trained model to impute gene expression from on genotype dosages, follow Module 2 workflow in of https://gitlab.mpcdf.mpg.de/luciat/castom-igex.git
DOI: 10.6084/m9.figshare.22347574.v1
title: Trained PriLer models on European ancestry individuals

description: Prior learned elastic-net regression (PriLer) gene expression models trained on reference panels GTEx v6p and CMC release 1. Inside each folder, "genotype_info/" include tab-separated files divided per chromosome with info on variants used to train the models. "tissues/" include trained models divided per tissue. In the corresponding folders,<strong> resPrior_regEval_allchr.txt</strong> is a tab-separated file with summary statistics of trained model for each gene, sorted by chromosome and position. <strong>resPrior_regCoeffSnps_allchr.RData </strong>is an RData object including a Sparse Matrix per chromosome n. variants x n. of genes. Variants position match genotype files and gene position match gene summary statistic order (divided per chromosome) To use the trained model to impute gene expression from on genotype dosages, follow https://gitlab.mpcdf.mpg.de/luciat/castom-igex/-/tree/master/Software/model_prediction/ workflow
DOI: 10.14457/nida.the.2018.105
title: การทำการตลาดออนไลน์ผ่านเฟซบุ๊กของร้านเสื้อผ้าแฟชั่นสตรีที่มีผลต่อกระบวนการตอบสนองของผู้บริโภค
DOI: 10.14457/nida.the.2022.2
title: การศึกษาทัศนวิสัยระยะยาวในประเทศไทยและความสัมพันธ์กับปัจจัยทางอุตุนิยมวิทยา
DOI: 10.5281/zenodo.7776509
title: Detour Data and Traveler Survey

description: Detour Survey and Count Data
DOI: 10.5281/zenodo.7776510
title: Detour Data and Traveler Survey

description: Detour Survey and Count Data
DOI: 10.6084/m9.figshare.22341070.v1
title: SomiteExplorerR | Datasets used to infer individual somite period and length using systematic measurements of the whole embryo segmented region.

description: <strong>Data description </strong>| Chick Embryo Segmented Region Length Measurements. <strong>Brief methodology description</strong> | Length measurements were performed in frames from live imaging taken at 3 minute intervals, using Axiovision Se64 Rel 4.9.1 (Carl Zeiss) or Zen 2.5 (blue edition, Carl Zeiss). In each frame, measurements were taken from the anterior border of the first somite until the last completely formed cleft. A somitic cleft was considered completely formed only when it was clearly visible from its axial to lateral limits. We conducted a total of 2836 measurements, corresponding to 13 different chicken embryos, in stages HH7 to HH10 (corresponding to somites 1 to 10), and HH11+ to HH13+ (corresponding to somites 14 to 20). To minimize measurement biases, at least two different operators performed independent measurements. <strong>Data analysis R Package</strong> | These data are analysed using the R package: <em>SomiteExplorerR</em> deposited in GitHub (https://github.com/iduarte/SomiteExplorerR). <strong>Citation</strong> | These data are discussed in the scientific paper: Ana Cristina Maia-Fernandes, Ana Martins-Jesus, Tomás Pais-de-Azevedo, Ramiro Magno, Isabel Duarte, Raquel P. Andrade.<em> </em><em>Spatio-Temporal Dynamics of Early Somite Segmentation in the Chicken Embryo.</em><em> </em>2023. (DOI: To be added after publication). <br>
DOI: 10.6084/m9.figshare.22344412
title: Table 1. Extremophile Protist Isolates

description: References for the cultivation conditions for each representative isolate are listed, including sampling location, GenBank Accessions, number of sequences included, and presence of published genome, if available.
DOI: 10.6084/m9.figshare.22344412.v2
title: Table 1. Extremophile Protist Isolates

description: References for the cultivation conditions for each representative isolate are listed, including sampling location, GenBank Accessions, number of sequences included, and presence of published genome, if available.
DOI: 10.6084/m9.figshare.22344412.v1
title: extremophile_protist_isolates_V2

description: References for the cultivation conditions for each representative isolate are listed, including sampling location, GenBank Accessions, number of sequences included, and presence of published genome, if available.
DOI: 10.6084/m9.figshare.22110818
title: Table 4. Extremophile Protist Genome Adaptations

description: References of known genome adaptations of extremophile protists, with their form, taxonomic division, and extremophile type.
DOI: 10.6084/m9.figshare.22110818.v2
title: Table 4. Extremophile Protist Genome Adaptations

description: References of known genome adaptations of extremophile protists, with their form, taxonomic division, and extremophile type.
DOI: 10.6084/m9.figshare.22110818.v1
title: extremophile_protist_genome_adaptations.csv

description: References of known genome adaptations of extremophile protists, with their form, taxonomic division, and extremophile type.
DOI: 10.6084/m9.figshare.22344481
title: Table 3. Extremophile Protist Taxonomy

description: Taxonomic output and 18S sequence from DADA2 PR2 database for each sequence included in phylogenetic tree.
DOI: 10.6084/m9.figshare.22344481.v2
title: Table 3. Extremophile Protist Taxonomy

description: Taxonomic output and 18S sequence from DADA2 PR2 database for each sequence included in phylogenetic tree.
DOI: 10.6084/m9.figshare.22344481.v1
title: extremophile_protist_taxonomy_V2

description: Taxonomic output and 18S sequence from DADA2 PR2 database for each sequence included in phylogenetic tree.
DOI: 10.6084/m9.figshare.22344484
title: Table 2. Extremophile Protist Environmental Sequences

description: Sources of environmental 18s rRNA sequences included in the review, with number of sequences included, environment, sampling condition, and geographic locations.
DOI: 10.6084/m9.figshare.22344484.v2
title: Table 2. Extremophile Protist Environmental Sequences

description: Sources of environmental 18s rRNA sequences included in the review, with number of sequences included, environment, sampling condition, and geographic locations.
DOI: 10.6084/m9.figshare.22344484.v1
title: extremophile_protist_environmental_seqs

description: Sources of environmental 18s rRNA sequences included in the review, with number of sequences included, environment, sampling condition, and geographic locations.
DOI: 10.6084/m9.figshare.7172885
title: suppData1-OGs.txt | Massive Lateral Gene Transfer of genes involved in carbohydrate metabolism on the Contribution of Lateral Gene Transfer to the evolution of the eukaryotic fungus Piromyces sp. strain E2

description: Lateral Gene Transfer candidate set: Hydrogenosomal protein prediction. Set of predicted hydrogenosomal proteins that are candidates to have been horizontally transferred from Bacteria to the eukaryote Piromyces sp.<br> NOTE | This data file is also present in the <strong>Prok2EukLateralGeneTransfer</strong> data record (to be together with the other relavant files from the same publication).
DOI: 10.20363/zfmk-coll.araneae-2018-03
title: ZFMK Araneae collection

description: The collections of basal arthropods including Araneae at the Zoological Research Museum Alexander Koenig Bonn
DOI: 10.20363/zfmk-coll.araneae-2021-04
title: ZFMK Araneae collection
title: The collections of basal arthropods including Araneae at the Zoological Research Museum Alexander Koenig Bonn

description: The collections of basal arthropods including Araneae at the Zoological Research Museum Alexander Koenig Bonn
DOI: 10.5281/zenodo.7026244
title: Data Set "A simple and consistent quantum-chemical fragmentation scheme for proteins that includes two-body contributions"

description: Data set accompanying the publication "A simple and consistent quantum-chemical fragmentation scheme for proteins that includes two-body contributions" This dataset contains: - PDB files of protonated protein structures used as test cases - PyADF scripts for running MFCC-MBE(2) calculations - Python scripts for generating plots including raw numerical data
DOI: 10.5281/zenodo.7026243
title: Data Set "A simple and consistent quantum-chemical fragmentation scheme for proteins that includes two-body contributions"

description: Data set accompanying the publication "A simple and consistent quantum-chemical fragmentation scheme for proteins that includes two-body contributions" This dataset contains: - PDB files of all structures used as test cases - PyADF scripts for running MFCC-MBE(2) calculations - Jupyter notebook for generating plots including raw numerical data - Total energies (in a.u.) for the different test cases
DOI: 10.5281/zenodo.7678774
title: Data Set "A simple and consistent quantum-chemical fragmentation scheme for proteins that includes two-body contributions"

description: Data set accompanying the publication "A simple and consistent quantum-chemical fragmentation scheme for proteins that includes two-body contributions" This dataset contains: - PDB files of all structures used as test cases - PyADF scripts for running MFCC-MBE(2) calculations - Jupyter notebook for generating plots including raw numerical data
DOI: 10.5281/zenodo.7778185
title: Data Set "A simple and consistent quantum-chemical fragmentation scheme for proteins that includes two-body contributions"

description: Data set accompanying the publication "A simple and consistent quantum-chemical fragmentation scheme for proteins that includes two-body contributions" This dataset contains: - PDB files of all structures used as test cases - PyADF scripts for running MFCC-MBE(2) calculations - Jupyter notebook for generating plots including raw numerical data - Total energies (in a.u.) for the different test cases
DOI: 10.20363/zfmk-coll.araneae-2023-02
title: ZFMK Araneae collection

description: The collections of basal arthropods including Araneae at the Leibniz Institute for the Analysis of Biodiversity Change (LIB) - Museum Koenig Bonn
DOI: 10.24378/exe.4584
title: Multisensory Processing of Emotional Cues Predicts Intrusive Memories after Virtual Reality Trauma (dataset)

description: This is the dataset used for the Heffer et al. (2023) article "Multisensory Processing of Emotional Cues Predicts Intrusive Memories after Virtual Reality Trauma" published in Virtual Reality.
description: This dataset includes data for the diary measure and behavioural outcomes for the audiovisual emotion recognition tasks used in the publication, "Multisensory Processing of Emotional Cues Predicts Intrusive Memories after Virtual Reality Trauma". In this study the authors investigated perception of happy, angry and sad emotions within unimodal (audio- and visual-only), congruent and incongruent audiovisual face and voice displays and examined the extent to which this was associated with the occurrence of intrusive memories after exposure to a virtual reality trauma simulation, measured using seven-day diary measure. The data is organised to facilitate replication of the stepwise regression analyses carried out in the aforementioned study. Further Information about the dataset has been provided in the README sheet in the Excel spreadsheet file.
DOI: 10.5281/zenodo.7778124
title: The Social Group Interaction Dataset

description: The Social Group Interaction Dataset is a dataset consisting of recordings of 6 groups of 5 people completing a series of tasks which provoke group formation. The sorts of interactions encouraged by task completion are as follows: discussion, collaborative task, robot interaction and debate. Recordings include Vicon and facial go-pro recordings. Big 5 personality results and basic demographic information are also included.
DOI: 10.5281/zenodo.7778123
title: The Social Group Interaction Dataset

description: The Social Group Interaction Dataset is a dataset consisting of recordings of 6 groups of 5 people completing a series of tasks which provoke group formation. The sorts of interactions encouraged by task completion are as follows: discussion, collaborative task, robot interaction and debate. Recordings include Vicon and facial go-pro recordings. Big 5 personality results and basic demographic information are also included.
DOI: 10.5281/zenodo.7778174
title: Output files of the computationally reviewed literature data on enantiomeric metabolism

description: The computationally reviewed literature data on enantiomeric metabolism. The chiral drug selection based on quantum chemistry's role in the enantiomeric metabolism.
DOI: 10.5281/zenodo.7778173
title: Output files of the computationally reviewed literature data on enantiomeric metabolism

description: The computationally reviewed literature data on enantiomeric metabolism. The chiral drug selection based on quantum chemistry's role in the enantiomeric metabolism.
DOI: 10.5281/zenodo.7778251
title: NMR data related to the Faraday Discussion article

description: Solid state NMR spectra from figures 3 and 4.
DOI: 10.5281/zenodo.7778249
title: NMR data related to the Faraday Discussion article

description: Solid state NMR spectra from figures 3 and 4.
DOI: 10.20363/zfmk-coll.crustacea-2018-11
title: ZFMK Crustacea collection

description: The collections of basal arthropods including Crustracea at the Zoological Research Museum Alexander Koenig Bonn
DOI: 10.48557/j4rgcc
title: Replication Data for: Regularized Bennett and Zwanzig free energy estimators

description: The file contains the simulation data of the paper: "Regularized Bennett and Zwanzig free energy estimators." Once the file is uncompressed in the input folder there is a file called "lambda.txt" which contains the set of lambda values and the files "harmonic%.6f.txt" (the float in the file name is the corresponding lambda value) which contains the potential values for each time step. Assuming a 0-based indexing, column 2 is the Uf potential values, column 3 is Ur, column 5 is Ur−Uf​. In this simulation Ur is the full force field and Uf​ is the Debye crystal. The unit is kJ/mol. The folder contains pre-computed results and they can be computed by using the python source in the git repository: https://gitlab.iit.it/SDecherchi/regularizedbar
DOI: 10.6084/m9.figshare.22323745.v2
title: Raw data - Renal Microvascular Compartment-Specific MicroRNA Changes in Response to Sepsis

description: Raw data of the manuscript "Renal Microvascular Compartment-Specific MicroRNA Changes in Response to Sepsis" is included. Types of included data are - NDPI files showing in situ hybridisation in mouse kidney - Differential expression analysis data from small RNA sequencing - Raw CT values of all included RT-qPCRs - Mouse plasma ELISA data - Flow cytometry data - HUVEC - Cell supernatant ELISA data - HUVEC - Uncropped immunoblots - HUVEC
DOI: 10.18712/nsd-nsd0929-v3
title: Poverty and social exclusion. Eurobarometer 40

description: The survey was a parallel survey to the Standard Eurobarometer 44.1, and was conducted in the same way and time period as in the EU-countries. The Norwegian data are part of the integrated data set that is available for researchers worldwide.

The Standard Eurobarometer is a set of surveys that is administrated and financed by the European commission. It aims to gather information on social, economic and political conditions in the member countries. All Standard Eurobarometer surveys contain certain trend questions on the knowledge of and attitudes towards the EU and the process of European integration.

From 1990 to 1996, NSD had permission from EU to conduct the surveys in Norway. In total, 12 Norwegian surveys were conducted.

The subjects of this survey are poverty and social exclusion.
DOI: 10.25375/uct.22132736
title: Secretion of cytokines, chemokines and antibodies in individuals with resistance to Mycobacterium tuberculosis infection

description: Cytokines and total antibodies in plasma and supernatants from Quantiferon-TB PLUS assay (Nil and TB1 stimulated) after inclubation for 16-20 hours. Concentrations were measured using luminex assays kits from Biorad (antibody isotyping panel) and Merck-Melliplex (high sensitivity T cell panel) according to manufacturers' instructions. <br> Samples were collected from individuals with latent TB infection (LTBI, IGRA+ & TST+), people with resistance to Mtb infection (Resisters, IGRA- & TST-) and people with discordant results for IGRA and TST (TST=0 and IGRA &gt; 1IU/mL). IGRA+ for IFN-gamma level &gt;0.35IU/mL; IGRA- for IFN-gamma &lt;0.35IU/mL; TST+ for induration &gt;10mm and TST- for induration &lt;10mm