cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.2280gb5xf
title: Aggression and spatial positioning of kin and non-kin fish in social groups

description: Group-living animals are faced with the challenge of sharing space and
 local resources amongst group members who may be either relatives or
 non-relatives. Individuals may reduce the inclusive fitness costs they
 incur from competing with relatives by either reducing their levels of
 aggression towards kin or by maintaining physical separation between kin.
 In this field study, we used the group-living cichlid Neolamprologus
 multifasciatus to examine whether within-group aggression is reduced among
 group members that are kin and whether kin occupy different regions of
 their group’s territory to reduce kin competition over space and local
 resources. We determined the kinship relationships among cohabiting adults
 via microsatellite genotyping and then combined these with spatial and
 behavioural analyses of groups in the wild. We found that aggressive
 contests between group members declined in frequency with spatial
 separation between their shelters. Female kin did not engage in aggressive
 contests with one another, whereas non-kin females did, despite the fact
 these females lived at similar distances from one another on their groups’
 territories. Contests within male-male and male-female dyads did not
 clearly correlate with kinship. Non-kin male-male and male-female dyads
 lived at more variable distances from one another on their territories
 than their corresponding kin dyads. Together, our study indicates that
 contests among group members can be mediated by relatedness in a
 sex-dependent manner. We also suggest that spatial relationships can play
 an important role in determining the extent to which group members compete
 with one another.
description: We sampled wild groups of <em>Neolamprologus</em>
 <em>multifasciatus</em> in the wild and recorded the group
 members' within-group social/contest behaviours and spatial
 positioning on the territory. We then used microsatellite genotyping to
 estimate pairwise relatedness among all group members and tested how
 relatedness correlated with within-group contests and spatial
 separation.
description: We used the statistical software R to conduct all our
 analyses.
DOI: 10.5281/zenodo.18244324
title: Serum & Stool HAdV qPCR results
DOI: 10.5061/dryad.mgqnk9948
title: Historical DNA reveals climate adaptation in an endangered songbird

description: To cope with climate change, species may shift their distributions or
 adapt in situ to changing environmental conditions. However, clear
 examples of genetic changes via adaptation are limited. We explore
 evolutionary responses to climate change in the endangered southwestern
 willow flycatcher (Empidonax trailli extimus) through whole-genome
 comparisons between historical specimens, collected from 1888–1909 near
 San Diego, CA, and contemporary individuals from across the breeding
 range. Genomic analyses revealed that introgression into San Diego
 increased adaptive potential over time and shifted genome-wide population
 structure towards that of neighboring populations. In contrast, loci
 linked to climate (dew point temperature and precipitation) shifted away
 from neighboring populations and in a direction consistent with adaptation
 to climate change in southern CA. This research highlights the role of
 admixture in facilitating adaptive shifts through its impact on
 genome-wide genetic variation and represents one of the few studies to
 document climate adaptation in a wild population.
DOI: 10.5061/dryad.jh9w0vtgk
title: Regional and global climate risks for reef corals: incorporating species-specific vulnerability and exposure to climate hazards

description: Climate change is driving rapid and widespread erosion of the
 environmental conditions that formerly supported species persistence.
 Existing projections of climate change typically focus on forecasts of
 acute environmental anomalies and global extinction risks. The current
 projections also frequently consider all species within a broad taxonomic
 group together without differentiating species-specific patterns.
 Consequently, we still know little about the explicit dimensions of
 climate risk (i.e., species-specific vulnerability, exposure and hazard)
 that are vital for predicting future biodiversity responses (e.g.,
 adaptation, migration) and developing management and conservation
 strategies. Here, we use reef corals as model organisms (n = 741 species)
 to project the extent of regional and global climate risks of marine
 organisms into the future. We characterise species-specific vulnerability
 based on the global geographic range and historical environmental
 conditions (1900–1994) of each coral species within their ranges and
 quantify the projected exposure to climate hazard beyond the historical
 conditions as climate risk. We show that many coral species will
 experience a complete loss of pre-modern climate analogs at the regional
 scale and across their entire distributional ranges, and such exposure to
 hazardous conditions is predicted to pose substantial regional and global
 climate risks to reef corals. Although high-latitude regions may provide
 climate refugia for some tropical corals until the mid-21st century, they
 will not become a universal haven for all corals. Notably, high-latitude
 specialists and species with small geographic ranges remain particularly
 vulnerable as they tend to possess limited capacities to avoid climate
 risks (e.g., via adaptive and migratory responses). Predicted climate
 risks are amplified substantially under the SSP5-8.5 compared with the
 SSP1-2.6 scenario, highlighting the need for stringent emission controls.
 Our projections of both regional and global climate risks offer unique
 opportunities to facilitate climate action at spatial scales relevant to
 conservation and management.
DOI: 10.5061/dryad.j0zpc86kd
title: Finger gesture recognition with smart skin technology and deep learning

description: Finger gesture recognition was extensively studied in recent years for a
 wide range of human-machine interface applications. Surface
 electromyography (sEMG), in particular, is an attractive, enabling
 technique in the realm of finger gesture recognition, and both low and
 high-density sEMG were previously studied. Despite the clear potential,
 cumbersome electrode wiring and electronic instrumentation render
 contemporary sEMG-based finger gestures recognition to be performed under
 unnatural conditions. Recent developments in smart skin technology provide
 an opportunity to collect sEMG data in more natural conditions. Here we
 report on a novel approach based on a soft 16-electrode array, a miniature
 and wireless data acquisition unit and neural network analysis, in order
 to achieve gesture recognition under natural conditions. Finger gesture
 recognition accuracy values, as high as 93.1%, were achieved for 8
 gestures when the training and test data were from the same session. For
 the first time, high accuracy values are also reported for training and
 test data from different sessions for three different hand positions.
 These results demonstrate an important step towards sEMG-based gesture
 recognition in non-laboratory settings, such as in gaming or Metaverse.
description: Eight healthy subjects (aged 18–30)
 completed two recording sessions with good SNR. Electrode arrays were
 placed on the region of the extensor digitorum muscle of the dominant
 hand. Muscle location was identified by applying strong abduction of the
 fingers. During the recording, each subject sat or stood in front of a
 table (depending on the position of the hand being examined). An
 instructional video displayed on a computer was used to guide the
 subjects.
DOI: 10.5061/dryad.hqbzkh1mr
title: Hypermutator emergence in experimental Escherichia coli populations is stress type dependent

description: Genotypes exhibiting an increased mutation rate, called hypermutators, can
 propagate in microbial populations because they can have an advantage due
 to the higher supply of beneficial mutations needed for adaptation.
 Although this is a frequently observed phenomenon in natural and
 laboratory populations, little is known about the influence of parameters
 such as the degree of maladaptation, stress intensity and the genetic
 architecture for adaptation on the emergence of hypermutators. To address
 this knowledge gap, we measured the emergence of hypermutators over ~1000
 generations in experimental Escherichia coli populations exposed to
 different levels of osmotic or antibiotic stress. Our stress types were
 chosen based on the assumption that the genetic architecture for
 adaptation differs between them. Indeed, we show that the size of the
 genetic basis for adaptation is larger for osmotic stress compared to
 antibiotic stress. During our experiment, we observed an increased
 emergence of hypermutators in populations exposed to osmotic stress but
 not in those exposed to antibiotic stress, indicating that hypermutator
 emergence rates are stress-type-dependent. These results support our
 hypothesis that hypermutator emergence is linked to the size of the
 genetic basis for adaptation. In addition, we identified other parameters
 that covaried with stress type (stress level and IS transposition rates)
 that might have contributed to an increased hypermutator provision and
 selection. Our results provide a first comparison of hypermutator
 emergence rates under varying stress conditions and point towards complex
 interactions of multiple stress-related factors on the evolution of
 mutation rates.
description: mutation_list_g1000.csv: whole genome sequencing of
 evolved populations and analysed using Breseq Four
 datasets with growth kinetics parameters of ancestral and evolved strains
 in different antibiotic (GM) or salt concentrations. Raw data were
 obtained with a TECAN plate reader and growth kinetic parameters were
 calculated with the grofit package in R: GM_allparameters_ancestor.csv GM_allparameters_evolved.csv salt_allparameters_ancestor_corrected.csv salt_allparameters_evolved.csv Compiled_OD_measures.csv: OD measurements of experimental populations throughout the experiment after 24h of growth Timing of IS10 insertions - PCR results.xlsx: results for the PCR assay ("PCR" = performed on all populations; "int PCR" = performed on populations with a positive PCR) All CSV files except Timing of IS10 insertions can be opened with Open Office.
DOI: 10.5061/dryad.j6q573nk7
title: The delayed effect of climatic conditions on pre-fledging nestling haematocrit in a suboscine species in Patagonia

description: Haematocrit, the proportion of blood comprising erythrocytes, is often
 used as a proxy of individual condition. Nestling haematocrit is
 influenced by several factors, but ambient temperature is generally agreed
 as a key driver. It is unclear which day(s) in embryonic or nestling
 development are most influential in determining pre-fledgling haematocrit.
 This is important, because if we are able to identify what day(s)
 nestlings are physiologically most vulnerable to climatic conditions, this
 may inform future conservation management and help mitigate the effects.
 We investigated the effect of ambient temperature, precipitation, body
 size, brood size, age, food abundance and habitat on nestling haematocrit
 in Aphrastura spinicauda (thorn-tailed Rayaditos). We collected this data
 from two climatically different locations in Chile: Northern Patagonia
 (Pucón) and Sub-Antarctic Patagonia (Navarino Island), located ~1800 km
 further south. We aimed to identify the key drivers of nestling
 haematocrit and find when nestlings are physiologically most vulnerable to
 climatic conditions. We confirm that ambient temperature is the key driver
 of nestling haematocrit, with increasing ambient temperatures nestling
 haematocrit decreased. However, precipitation also affected haematocrit in
 the late incubation stage. At low and high precipitation, nestling
 haematocrit was low and is optimal in light rainfall. Our results show a
 delayed effect of ambient temperature and precipitation in late incubation
 and on the day of hatching which can determine pre-fledgling haematocrit,
 which may cause lower post-fledgling fitness. We found that climatic
 conditions on the day haematocrit was collected were not important in
 determining haematocrit. We found that haematocrit was higher in the
 sub-Antarctic area and that higher temperatures and precipitation on the
 day of hatching will result in lower nestling haematocrit and poorer
 pre-fledgling condition. As atmospheric temperatures rise, nestling
 fitness is at risk. This is a threat to many bird species, especially
 those in locations vulnerable to climate breakdown.
description: Data were collected from two climatically contrasting sites in
 Chile: one on Navarino Island (54.932° S, 67.605° W), which was ~5 km in
 radius, and the other is in Pucón (39.272° S, 71.977° W), which was ~10 km
 in radius and ~1800 km north of the other population. Data were collected
 in two years from September 2018 – February 2019 and from September 2019 –
 February 2020, during the Rayadito breeding season. These data were stored
 and processed in Microsoft Excel and R in RStudio v3.5.3 statistical
 software.
description: Microsoft excel (CSV files) and R in RStudio v3.5.3 statistical
 software.
DOI: 10.5061/dryad.qrfj6q5mp
title: Data for: Spatial heterogeneity and infection patterns on epidemic transmission disclosed by a combined contact-dependent dynamics and compartmental model

description: Epidemics, such as COVID-19, have caused significant harm to human society
 worldwide. A better understanding of epidemic transmission dynamics can
 contribute to more efficient prevention and control measures.
 Compartmental models, which assume homogeneous mixing of the population,
 have been widely used in the study of epidemic transmission dynamics,
 while agent-based models rely on a network definition for individuals. In
 this study, we developed a real-scale contact-dependent dynamic (CDD)
 model and combined it with the traditional
 susceptible-exposed-infectious-recovered (SEIR) compartment
 model. 
description: The dataset includes the data of CDD-SEIR model and scripts for
 calculation and pictures. Because the total size of 9*5=45 trajectories of
 40 days is nearly 2T(9*5*40G), only a short trajectory of 1 day is
 included. Please refer to README.md for more detail.
description: The data file can be opened by vim. The scripts can be performed
 by bash, python or gnuplot.
DOI: 10.5061/dryad.hmgqnk9nk
title: Jumping to new hosts: the diversification of flea beetles (Coleoptera: Chrysomelidae: Alticini) in the context of their host plant associations

description: Flea beetles (Alticini) represent one of the most diverse groups within
 the family Chrysomelidae and are associated with more than 100 different
 plant families. Conspicuously, only 10 genera account for about a quarter
 of flea beetle diversity, whereas about 380 genera each comprise less than
 ten species, indicating different rates of diversification within the
 Alticini. Here, we reconstructed the phylogenetic relationships of 608
 species in 101 Alticini genera using mitogenomes and cytochrome oxidase I,
 and applied several frameworks of clade-specific diversification rate
 analyses. Increased diversification rates were consistently detected in
 the cosmopolitan genera Altica and Longitarsus, the Palearctic genus
 Phyllotreta, and in neotropical taxa of the subtribe Oedionychina. In
 addition, we tested whether the evolution of specialized interactions with
 plants of the order Brassicales influenced the diversification of
 Phyllotreta and Psylliodes flea beetles. Specialization on Brassicales was
 only associated with increased diversification rates in Phyllotreta but
 not in Psylliodes. Our results indicate that host associations per se do
 not explain different diversification rates and lay the groundwork for
 investigating the evolutionary drivers of rapid radiations in Alticini.
DOI: 10.15468/dl.7htzeh
title: Occurrence Download

description: A dataset containing 10442344 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Squamata"
 ]
}

 The dataset includes 10442344 records from 8507 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002879-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31216384
title: code and data for "Global variation of plant nitrogen acquisition strategies and their responses to decreasing nitrogen availability"

description: <pre>This repository provides the code and data supporting the manuscript:<br><br>"Global variation of plant nitrogen acquisition strategies and their responses to decreasing nitrogen availability"<br><br><br></pre>
DOI: 10.6084/m9.figshare.31216384.v1
title: code and data for "Global variation of plant nitrogen acquisition strategies and their responses to decreasing nitrogen availability"

description: <pre>This repository provides the code and data supporting the manuscript:<br><br>"Global variation of plant nitrogen acquisition strategies and their responses to decreasing nitrogen availability"<br><br><br></pre>
DOI: 10.15468/dl.j6dkc8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xylocarpus mekongensis",
 "HasCoordinate is true",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "not" : {
 "HasGeospatialIssue" : [
 "is true"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002997-260129131611470/datasets/export for details.
DOI: 10.5281/zenodo.18438101
title: INFLATSIYA VA UNGA QARSHI KURASHISH USULLARI

description: Mazkur maqolada inflyatsiya jarayonining iqtisodiy mohiyati, uning kelib chiqish sabablari hamda milliy va global iqtisodiyotga ko‘rsatadigan ta’siri atroflicha tahlil qilinadi. Inflyatsiya nafaqat narxlar umumiy darajasining oshishi, balki aholi real daromadlari pasayishi, jamg‘arish faolligining susayishi va investitsion muhitning beqarorlashuvi bilan ham tavsiflanadigan murakkab makroiqtisodiy hodisa sifatida qaraladi. Tadqiqot davomida inflyatsiyaning asosiy turlari — talab inflyatsiyasi, taklif inflyatsiyasi va strukturaviy inflyatsiyaning shakllanish mexanizmlari yoritiladi.
DOI: 10.5281/zenodo.18438100
title: INFLATSIYA VA UNGA QARSHI KURASHISH USULLARI

description: Mazkur maqolada inflyatsiya jarayonining iqtisodiy mohiyati, uning kelib chiqish sabablari hamda milliy va global iqtisodiyotga ko‘rsatadigan ta’siri atroflicha tahlil qilinadi. Inflyatsiya nafaqat narxlar umumiy darajasining oshishi, balki aholi real daromadlari pasayishi, jamg‘arish faolligining susayishi va investitsion muhitning beqarorlashuvi bilan ham tavsiflanadigan murakkab makroiqtisodiy hodisa sifatida qaraladi. Tadqiqot davomida inflyatsiyaning asosiy turlari — talab inflyatsiyasi, taklif inflyatsiyasi va strukturaviy inflyatsiyaning shakllanish mexanizmlari yoritiladi.
DOI: 10.15468/dl.9yn7m4
title: Occurrence Download

description: A dataset containing 91350122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is EOD – eBird Observation Dataset",
 "GadmGid is USA.5_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2015-2026"
 ]
}

 The dataset includes 91350122 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002976-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fh33fx
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sus philippensis"
 ]
}

 The dataset includes 96 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002998-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xaj758
title: Occurrence Download

description: A dataset containing 653 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hirtella americana",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 653 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002999-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.953qmp
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hirtella enneandra",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003001-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xvram6
title: Occurrence Download

description: A dataset containing 1517 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Spider (Arachnida, Araneae) fauna of the lowland part of the Balkhash-Alakol basin (SE Kazakhstan). Part 1: Literature data"
 ]
}

 The dataset includes 1517 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003000-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18438115
title: INFLYATSIYA JARAYONLARI VA PULNING XARID QOBILIYATIGA TA'SIRI

description: Ushbu maqolada inflyatsiya jarayonlarining shakllanish mexanizmlari hamda ularning pulning xarid qobiliyatiga ko‘rsatadigan ta’siri ilmiy-nazariy va amaliy jihatdan tahlil qilinadi. Inflyatsiya iqtisodiyotning deyarli barcha sohalariga bevosita ta’sir ko‘rsatuvchi makroiqtisodiy hodisa bo‘lib, uning yuqori yoki beqaror darajasi aholining real daromadlari pasayishiga, jamg‘armalarning qadrsizlanishiga va iqtisodiy barqarorlikning izdan chiqishiga olib keladi.
DOI: 10.5281/zenodo.18438114
title: INFLYATSIYA JARAYONLARI VA PULNING XARID QOBILIYATIGA TA'SIRI

description: Ushbu maqolada inflyatsiya jarayonlarining shakllanish mexanizmlari hamda ularning pulning xarid qobiliyatiga ko‘rsatadigan ta’siri ilmiy-nazariy va amaliy jihatdan tahlil qilinadi. Inflyatsiya iqtisodiyotning deyarli barcha sohalariga bevosita ta’sir ko‘rsatuvchi makroiqtisodiy hodisa bo‘lib, uning yuqori yoki beqaror darajasi aholining real daromadlari pasayishiga, jamg‘armalarning qadrsizlanishiga va iqtisodiy barqarorlikning izdan chiqishiga olib keladi.
DOI: 10.15468/dl.hzg3nj
title: Occurrence Download

description: A dataset containing 7020 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polistes aurifer"
 ]
}

 The dataset includes 7020 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003002-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.