cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30933734
title: Raw data and tidy data from the pre-adaptation experiment

description: This dataset accompanies the manuscript titled "Rapid evolution in necromass use under resource limitation reduces persistence in producer-decomposer microbial biospheres." The study investigates how microbial evolution under resource-limited conditions affects the stability and persistence of synthetic microbial ecosystems. Using a closed-system microbial biosphere model, the research examines adaptive changes in <i>Escherichia coli</i> during 60 days of monoculture under spatially homogeneous (HMG) and heterogeneous (HTG) conditions, followed by co-culture with the autotrophic alga <i>Chlamydomonas reinhardtii</i>.Key experimental outcomes include phenotypic shifts in<i> E. coli </i>such as loss of motility, enhanced biofilm formation, and improved carbon source utilization—particularly on necromass derived from both <i>E. coli</i> and <i>C. reinhardtii</i>. Contrary to expectations, these adaptive traits, while beneficial in monoculture, reduced system-level persistence in producer-decomposer co-cultures, especially in spatially heterogeneous environments.The dataset includes raw and processed data from growth curve analyses, phenotypic assays (motility, biofilm, curli fimbriae, pellicle formation), chlorophyll fluorescence measurements (as a proxy for system persistence), and cell viability counts over time. Statistical analyses, survival models, and correlation matrices are also provided.<br>This work highlights an important eco-evolutionary trade-off: traits that enhance decomposer performance in isolation can undermine multisystem coexistence, with spatial structure during adaptation playing a critical role in shaping community outcomes. The data support further investigation into how microbial evolution influences ecosystem sustainability and cross-species interactions under resource scarcity.
DOI: 10.6084/m9.figshare.30933734.v1
title: Raw data and tidy data from the pre-adaptation experiment

description: This dataset accompanies the manuscript titled "Rapid evolution in necromass use under resource limitation reduces persistence in producer-decomposer microbial biospheres." The study investigates how microbial evolution under resource-limited conditions affects the stability and persistence of synthetic microbial ecosystems. Using a closed-system microbial biosphere model, the research examines adaptive changes in <i>Escherichia coli</i> during 60 days of monoculture under spatially homogeneous (HMG) and heterogeneous (HTG) conditions, followed by co-culture with the autotrophic alga <i>Chlamydomonas reinhardtii</i>.Key experimental outcomes include phenotypic shifts in<i> E. coli </i>such as loss of motility, enhanced biofilm formation, and improved carbon source utilization—particularly on necromass derived from both <i>E. coli</i> and <i>C. reinhardtii</i>. Contrary to expectations, these adaptive traits, while beneficial in monoculture, reduced system-level persistence in producer-decomposer co-cultures, especially in spatially heterogeneous environments.The dataset includes raw and processed data from growth curve analyses, phenotypic assays (motility, biofilm, curli fimbriae, pellicle formation), chlorophyll fluorescence measurements (as a proxy for system persistence), and cell viability counts over time. Statistical analyses, survival models, and correlation matrices are also provided.<br>This work highlights an important eco-evolutionary trade-off: traits that enhance decomposer performance in isolation can undermine multisystem coexistence, with spatial structure during adaptation playing a critical role in shaping community outcomes. The data support further investigation into how microbial evolution influences ecosystem sustainability and cross-species interactions under resource scarcity.
DOI: 10.5281/zenodo.18019929
title: pamflow's beginner tutorial output dataset

description: This repository contains the outputs resulting from runing pamflow  on a minimal dataset.

The repository includes the outputs of each pamflow's pipeline in separated folders:



Acoustic indices: One CSV file per sensor containing values for the acoustic indices computed by pamflow



Data preparation: The standardized acoustic data sets Media and Deployments along with a summary of the Media CSV file.


Graphical Soundscape: Plots and values for each sensor corresponding to the graphical soundscape

Quality Control: Visual aids for confronting expectations of the acoustic deployments against actual results. 

Species Detection: The standardized acoustic dataset for species vocalziation Observations. This folder also has the acoustic segments where vocalizations are present.


The Foundation for Conservation and Sustainable Development (FCDS) has been promoting sustainable forest management practices through community forestry to conserve local forests, reduce deforestation near the Serranía de Chiribiquete National Natural Park (PNN), and improve the quality of life of local communities. To evaluate the effectiveness of these actions, a community monitoring project was carried out in the municipalities of San Jose del Guaviare, El Retorno, and Calamar, located in Guaviare, Colombia.

The field audio recordings and monitoring design were co-created with the Humboldt Institute and the local community. If you use this dataset for testing or for developing other open-source tools, please be sure to acknowledge all participating community members, researchers, and institutions involved. The data cannot be used for machine learning purposes or for training AI models without explicit consent from the data creators.

Moises Romero Franco, Anibal De Jesus Martinez Peña,Daniel Chitiva Diaz, Nubia Quintero Medina, Edgar Gustavo Rodriguez Garzon, Granja Escuela Capricho Granja Escuela Capricho, Maria De Los Angeles Gaitan Muños, Flor Marleni Gaitan Muños, Jefferson Cocinero Garcia, Jose Eduardo Leon Triana, Cesar Augusto Urrego Gonzalez, Anderson Urrea Tacuma, Luz Idalba Restrepo Suarez, Maria De Los Angeles Gaitan Muñoz, Edwin Alcides Reyes Lopez, Juan Sebastián Ulloa, Juan Sebastián Cañas, Marcela González, Raúl Gómez

This data is provided under the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) license.
DOI: 10.5281/zenodo.18019930
title: pamflow's beginner tutorial output dataset

description: This repository contains the outputs resulting from runing pamflow  on a minimal dataset.

The repository includes the outputs of each pamflow's pipeline in separated folders:



Acoustic indices: One CSV file per sensor containing values for the acoustic indices computed by pamflow



Data preparation: The standardized acoustic data sets Media and Deployments along with a summary of the Media CSV file.


Graphical Soundscape: Plots and values for each sensor corresponding to the graphical soundscape

Quality Control: Visual aids for confronting expectations of the acoustic deployments against actual results. 

Species Detection: The standardized acoustic dataset for species vocalziation Observations. This folder also has the acoustic segments where vocalizations are present.


The Foundation for Conservation and Sustainable Development (FCDS) has been promoting sustainable forest management practices through community forestry to conserve local forests, reduce deforestation near the Serranía de Chiribiquete National Natural Park (PNN), and improve the quality of life of local communities. To evaluate the effectiveness of these actions, a community monitoring project was carried out in the municipalities of San Jose del Guaviare, El Retorno, and Calamar, located in Guaviare, Colombia.

The field audio recordings and monitoring design were co-created with the Humboldt Institute and the local community. If you use this dataset for testing or for developing other open-source tools, please be sure to acknowledge all participating community members, researchers, and institutions involved. The data cannot be used for machine learning purposes or for training AI models without explicit consent from the data creators.

Moises Romero Franco, Anibal De Jesus Martinez Peña,Daniel Chitiva Diaz, Nubia Quintero Medina, Edgar Gustavo Rodriguez Garzon, Granja Escuela Capricho Granja Escuela Capricho, Maria De Los Angeles Gaitan Muños, Flor Marleni Gaitan Muños, Jefferson Cocinero Garcia, Jose Eduardo Leon Triana, Cesar Augusto Urrego Gonzalez, Anderson Urrea Tacuma, Luz Idalba Restrepo Suarez, Maria De Los Angeles Gaitan Muñoz, Edwin Alcides Reyes Lopez, Juan Sebastián Ulloa, Juan Sebastián Cañas, Marcela González, Raúl Gómez

This data is provided under the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) license.
DOI: 10.15468/fk8nmk
title: Digital Catalogue of Biodiversity of Poland — Fungi: Blastocladiomycota, Chytridiomycota

description: The dataset presents a chapter of the &lt;a href='https://www.gbif.org/dataset/search?keyword=Digital%20Catalogue%20of%20Biodiversity%20of%20Poland'&gt;Digital Catalogue of Biodiversity of Poland&lt;/a&gt;, comprising taxa of (infra)specific level, reported from Poland in the present administrative boundaries of the country. In this instance of the Catalogue, the list includes only taxa of confirmed occurrence, ignoring doubtful records that need verification as well as synonyms and other not valid names. The occurrence of each species is supported by a published reference.
DOI: 10.15468/dl.96d4bc
title: Occurrence Download

description: A dataset listing the 152 species recorded in GBIF matching the query:
{
 "and" : [
 "GadmGid is ESP.9_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia"
 ]
}

 The dataset's 152 records were derived from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063130-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17086823
title: Dataset from the paper: A new microhylid frog species of the genus Platypelis from phytotelmata of Pandanus screw pines in the Sorata massif, northeastern Madagascar

description: Dataset from the paper: 

Rakotoarison, A., Petzold, A., Scherz, M.D., Crottini, A., Köhler, J., Hawlitschek, O., Ratsovaina, F.M., Glaw, F. & Vences, M. (2025) A new microhylid frog species of the genus Platypelis from phytotelmata of Pandanus screw pines in the Sorata massif, northeastern Madagascar. Zootaxa, 5717 (3), 383–402.

https://doi.org/10.11646/zootaxa.5717.3.5 

Includes: 



Call recordings

Alignment and treefile

Table with sequences and sequence metadata, including Genbank accession numbers
DOI: 10.5281/zenodo.17086824
title: Dataset from the paper: A new microhylid frog species of the genus Platypelis from phytotelmata of Pandanus screw pines in the Sorata massif, northeastern Madagascar

description: Dataset from the paper: 

Rakotoarison, A., Petzold, A., Scherz, M.D., Crottini, A., Köhler, J., Hawlitschek, O., Ratsovaina, F.M., Glaw, F. & Vences, M. (2025) A new microhylid frog species of the genus Platypelis from phytotelmata of Pandanus screw pines in the Sorata massif, northeastern Madagascar. Zootaxa, 5717 (3), 383–402.

https://doi.org/10.11646/zootaxa.5717.3.5 

Includes: 



Call recordings

Alignment and treefile

Table with sequences and sequence metadata, including Genbank accession numbers
DOI: 10.6084/m9.figshare.30933761
title: Datasets for Harvesting Easter Eggs: An Exploratory Study of Enjoying Transnarrative Media

description: An exploratory study guided by entertainment enjoyment theories explored potential predictors of enjoyment from transnarrative stories. A retrospective survey (<i>n</i> = 956) utilized both close- and open-ended measures to investigate experiences associated with discovering "easter eggs" in entertainment.
DOI: 10.6084/m9.figshare.30933761.v1
title: Datasets for Harvesting Easter Eggs: An Exploratory Study of Enjoying Transnarrative Media

description: An exploratory study guided by entertainment enjoyment theories explored potential predictors of enjoyment from transnarrative stories. A retrospective survey (<i>n</i> = 956) utilized both close- and open-ended measures to investigate experiences associated with discovering "easter eggs" in entertainment.
DOI: 10.5281/zenodo.18018286
title: Solar flare forecasting dataset

description: This dataset provides tabular metadata and labels for supervised learning experiments in short-term solar flare forecasting. It consists of observation sequences of solar active regions identified using the Space-weather HMI Active Region Patch (SHARP) data product from the Solar Dynamics Observatory (SDO).
DOI: 10.5281/zenodo.18018287
title: Solar flare forecasting dataset

description: This dataset provides tabular metadata and labels for supervised learning experiments in short-term solar flare forecasting. It consists of observation sequences of solar active regions identified using the Space-weather HMI Active Region Patch (SHARP) data product from the Solar Dynamics Observatory (SDO).
DOI: 10.6084/m9.figshare.30933230.v1
title: <b>Dual regulation of hemolysis and capsule by the CovR/S system promotes virulence in Group B </b><b>Streptococcus</b>

description: Group B Streptococcus (GBS) is a major zoonotic pathogen responsiblefor neonatal sepsis and cerebrospinal meningitis. A single adenine (T) insertion in the covR promoter, identified in a clinical isolate, has been shown to enhance pathogenicity. However, the mechanistic basis remains unclear. In this study, we demonstrated that this insertion downregulates covR expression and enhances hemolysin production. Unexpectedly, we also found that it leads to a thicker and more compact capsule based on dot blot and flow cytometry analyses. Transcriptome analysis performed on the covR promoter mutant revealed a significant upregulation in biofilm?related genes, including pgaC. Electrophoretic mobility shift assays confirmed the direct binding of CovR to the pgaC promoter, thereby identifying it as a transcriptional repressor involved in capsule regulation. Deletion of pgaC (ΔpgaC) severely compromised capsular stability, as validated by Western blot and transmission electron microscopy. The ΔpgaC mutant also exhibited impaired abilities in host cell adhesion, invasion, intracellular survival, and stress resistance. In a tilapia infection model, ΔpgaC caused significantly lower mortality, reduced bacterial loads in tissues, along with a marked attenuation of pro-inflammatory cytokine production relative to the wild type strain. Collectively, our results reveal a novel mechanism by which an insertion of a single nucleotide within the covR promoter enhances GBS virulence not only by increasing hemolysin production but also by reinforcing capsule stability via the direct upregulation of pgaC.
DOI: 10.6084/m9.figshare.30903971.v1
title: Data set "<b>Up in the Andes: Diversity and daily activity patterns of butterflies</b>"

description: Temporal activity of butterflies from Páramo de Belmira (Colombia - Antioquia). Butterflies recorded between 2011 and 2014
DOI: 10.13144/lil-1730
title: Fichier des prénoms - Édition 2024

description: L'édition 2024 du fichier des prénoms contient les prénoms attribués aux enfants nés en France (métropole et départements d'Outre-Mer) et les effectifs par sexe associés à chaque prénom entre 1900 et 2024 (et ce, dans les 3 fichiers proposés : national, départemental et régional). Le répertoire n'est pas exhaustif, notamment pour les personnes nées avant 1946.L'édition 2024 ne recense pas les prénoms des personnes vivantes une année donnée, mais les naissances enregistrées à l'État civil sur les bulletins de naissance ; sont exclues les personnes nées à l'étranger.Pour chaque prénom, il est indiqué, pour chaque année de naissance (de 1900 à 2024) et chaque sexe, le nombre de personnes inscrites à l’état civil sous ce prénom, arrondi au multiple de 5 le plus proche. La mise en place de cet arrondi est motivée par la variabilité de quelques unités d’une année à l’autre des fréquences et par la mise en œuvre des obligations de secret statistique. Un prénom est diffusé s'il a été attribué au moins 3 fois à des personnes de sexe féminin ou à des personnes de sexe masculin.
DOI: 10.15468/dl.q9zg4q
title: Occurrence Download

description: A dataset containing 2560 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((4.19581 43.67926,4.29149 43.68846,4.35419 43.73495,4.36292 43.82053,4.20651 43.84524,4.11838 43.78701,4.13982 43.72692,4.19581 43.67926))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Squamata"
 ]
}

 The dataset includes 2560 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063134-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e3k8mg
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isomira nitidula"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063135-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17422885
title: Data for "Materials for "Harnessing converted phases for rapid magnitude estimation and early warning with distributed acoustic sensing offshore Chile"

description: DAS waveforms of events used in "Harnessing converted phases for rapid magnitude estimation and Early Warning with DAS offshore Chile" to esimate peak amplitudes of seismic phases.
DOI: 10.5281/zenodo.17422886
title: Data for "Materials for "Harnessing converted phases for rapid magnitude estimation and early warning with distributed acoustic sensing offshore Chile"

description: DAS waveforms of events used in "Harnessing converted phases for rapid magnitude estimation and Early Warning with DAS offshore Chile" to esimate peak amplitudes of seismic phases.
DOI: 10.57967/hf/7291
title: Newtons_rings
DOI: 10.6084/m9.figshare.30933782
title: Occurrence records of the greater banded hornet (<i>Vespa tropica</i>) for habitat suitability modelling

description: Dataset associated with Assessing invasion risks and potential impacts of greater banded hornet across the United States (DOI: 10.1111/aab.70088)
DOI: 10.6084/m9.figshare.30933782.v1
title: Occurrence records of the greater banded hornet (<i>Vespa tropica</i>) for habitat suitability modelling

description: Dataset associated with Assessing invasion risks and potential impacts of greater banded hornet across the United States (DOI: 10.1111/aab.70088)
DOI: 10.5066/p1h2jzpr
title: USGS 3D Elevation Program (3DEP) Broad Agency Announcement and Data Collaboration Announcement Projects from Fiscal Year 2015 to Present (ver. 3.0, December 2025)

description: These data provide spatial information about USGS 3D Elevation Program (3DEP) Broad Agency Announcement (BAA) and Data Collaboration Announcement (DCA) lidar data acquisition projects from Fiscal Year (FY) 2015 to present, including the FY, state, project name, project size, award recipient, lidar quality level (QL), contracting mechanism, and project description. 

First release: April 2024
Revised: November 2024  (ver. 2.0)
Revised: December 2025 (ver. 3.0)
DOI: 10.15468/5k6jnr
title: Digital Catalogue of Biodiversity of Poland — Animalia: Arthropoda: Hexapoda: Insecta: Lepidoptera

description: The dataset presents a chapter of the &lt;a href='https://www.gbif.org/dataset/search?keyword=Digital%20Catalogue%20of%20Biodiversity%20of%20Poland'&gt;Digital Catalogue of Biodiversity of Poland&lt;/a&gt;, comprising taxa of (infra)specific level, reported from Poland in the present administrative boundaries of the country. In this instance of the Catalogue, the list includes only taxa of confirmed occurrence, ignoring doubtful records that need verification as well as synonyms and other not valid names. The occurrence of each species is supported by a published reference.
DOI: 10.5281/zenodo.18020503
title: Volumetric Dynamics of Spin and the Transition Process in the $\eta$ Field

description: This document details the finalization of the CRVD model, focusing specifically on the geometric explanation of electron spin and a deep analysis of the Stern- Gerlach (SG) experiment. The core concept revolves around the $\eta$ field geometry and its topological properties.
DOI: 10.5281/zenodo.18020504
title: Volumetric Dynamics of Spin and the Transition Process in the $\eta$ Field

description: This document details the finalization of the CRVD model, focusing specifically on the geometric explanation of electron spin and a deep analysis of the Stern- Gerlach (SG) experiment. The core concept revolves around the $\eta$ field geometry and its topological properties.
DOI: 10.15468/dl.ek5awc
title: Occurrence Download

description: A dataset containing 18962 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is COL.31.32_2",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Accipitriformes"
 ]
}

 The dataset includes 18962 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063136-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18019893
title: agalinis_pulchella_spades_01.fasta.gz
DOI: 10.5281/zenodo.18019892
title: agalinis_pulchella_spades_01.fasta.gz
DOI: 10.57967/hf/7323
title: Newtons_rings
DOI: 10.6084/m9.figshare.30933827
title: GINA Datasets.

description: The file contains data and calculations for Grey Influence Analysis of factors identified in the study.
DOI: 10.6084/m9.figshare.30933827.v1
title: GINA Datasets.

description: The file contains data and calculations for Grey Influence Analysis of factors identified in the study.
DOI: 10.15468/ysjkcz
title: Digital Catalogue of Biodiversity of Poland — Animalia: Nematoda

description: The dataset presents a chapter of the &lt;a href='https://www.gbif.org/dataset/search?keyword=Digital%20Catalogue%20of%20Biodiversity%20of%20Poland'&gt;Digital Catalogue of Biodiversity of Poland&lt;/a&gt;, comprising taxa of (infra)specific level, reported from Poland in the present administrative boundaries of the country. In this instance of the Catalogue, the list includes only taxa of confirmed occurrence, ignoring doubtful records that need verification as well as synonyms and other not valid names. The occurrence of each species is supported by a published reference.Authorship: Free-living and herbivorous fauna - Grażyna Winiszewska-Ślipińska, Grzegorz Sikora; parasitic fauna - Gerard Kanarek, Anna Okulewicz.
DOI: 10.25574/27382
title: Chandra X-ray Observatory ObsId 27382

description: Studying a Co-Evolving Cluster Population over 9 Gyr with Chandra (HRC GTO)
DOI: 10.5281/zenodo.15210142
title: Materials for "Harnessing converted phases for rapid magnitude estimation and early warning with distributed acoustic sensing offshore Chile"

description: This repository contains data, manual picks, catalogs and codes to reproduce the results and figures shown in the scientific paper "Harnessing secondary phases for rapid magnitude estimation with DAS offshore Chile and its implications for Early Warning".
DOI: 10.25500/edata.bham.00001497
title: Research data supporting the publication "Glomerular filtration rate estimation using creatinine and cystatin C for monitoring moderate chronic kidney disease: prospective, longitudinal accuracy study in an adult cohort"