cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13285138.v1
title: Additional file 2 of Deconvolution of cellular subsets in human tissue based on targeted DNA methylation analysis at individual CpG sites

description: Additional file 2. Excel application for cell type deconvolution. An application for cell type deconvolution is provided as separate Excel tool. The mean DNAm values for the cell-type-specific CpGs of the Illumina BeadChip training dataset are given as reference matrix. Furthermore, the application allows NNLS predictions to estimate the cellular composition in independent datasets. This table was generated in analogy to the NNLS application for Epi-Blood-Count [16].
DOI: 10.6084/m9.figshare.13285211.v1
title: Additional file 5 of The soybean gene GmHsp22.4 is involved in the resistance response to Meloidogyne javanica in Arabidopsis thaliana

description: Additional file 5. Primers used in this study.
DOI: 10.6084/m9.figshare.13285211
title: Additional file 5 of The soybean gene GmHsp22.4 is involved in the resistance response to Meloidogyne javanica in Arabidopsis thaliana

description: Additional file 5. Primers used in this study.
DOI: 10.6084/m9.figshare.13285222
title: Additional file 2 of CloneSifter: enrichment of rare clones from heterogeneous cell populations

description: Additional file 2: Table S4. Table of sgRNA-barcode sequences from the D458 clonal tracking experiment. The abundance of each sgRNA-barcode was calculated from normalized read counts and transformed by a base-10 logarithm (Methods: Clonal fitness measurements). Median rank and median values of each sgRNA-barcode in each condition across replicates are listed. Identified barcode sets including JQ1, DMSO and JQ1 & DMSO are listed in the last column.
DOI: 10.6084/m9.figshare.13285225.v1
title: Additional file 3 of CloneSifter: enrichment of rare clones from heterogeneous cell populations

description: Additional file 3: Table S5. Table of sgRNA-barcode sequences from the HeLa clonal tracking experiment. The abundance of each sgRNA-barcode was calculated with normalized read counts and transformed by a base-10 logarithm (Methods: Clonal fitness measurements). Median ranks and median values of each sgRNA-barcode in each condition across replicates are listed. Identified barcode sets including Hygromycin and PBS are listed in the last column.
DOI: 10.6084/m9.figshare.13285231.v1
title: Additional file 5 of CloneSifter: enrichment of rare clones from heterogeneous cell populations

description: Additional file 5: Table S7. Barcode_counts.
DOI: 10.6084/m9.figshare.13285225
title: Additional file 3 of CloneSifter: enrichment of rare clones from heterogeneous cell populations

description: Additional file 3: Table S5. Table of sgRNA-barcode sequences from the HeLa clonal tracking experiment. The abundance of each sgRNA-barcode was calculated with normalized read counts and transformed by a base-10 logarithm (Methods: Clonal fitness measurements). Median ranks and median values of each sgRNA-barcode in each condition across replicates are listed. Identified barcode sets including Hygromycin and PBS are listed in the last column.
DOI: 10.6084/m9.figshare.13285226.v1
title: Additional file 1 of Data from the European registry for patients with McArdle disease and other muscle glycogenoses (EUROMAC)

description: Additional file 1. Genetic variants according to clinical features.
DOI: 10.6084/m9.figshare.13285222.v1
title: Additional file 2 of CloneSifter: enrichment of rare clones from heterogeneous cell populations

description: Additional file 2: Table S4. Table of sgRNA-barcode sequences from the D458 clonal tracking experiment. The abundance of each sgRNA-barcode was calculated from normalized read counts and transformed by a base-10 logarithm (Methods: Clonal fitness measurements). Median rank and median values of each sgRNA-barcode in each condition across replicates are listed. Identified barcode sets including JQ1, DMSO and JQ1 & DMSO are listed in the last column.
DOI: 10.6084/m9.figshare.13285228.v1
title: Additional file 4 of CloneSifter: enrichment of rare clones from heterogeneous cell populations

description: Additional file 4: Table S6. Table of sgRNA-barcode sequences from the D458 clonal tracking experiment with CROP-seq based sgRNA-barcode library. The abundance of each sgRNA-barcode was calculated with normalized read counts and transformed by a base-10 logarithm (Methods: Clonal fitness measurements). Median ranks and median values of each sgRNA-barcode in each condition across replicates are listed. Identified barcode sets including JQ1 and DMSO are listed in the last column.
DOI: 10.6084/m9.figshare.13285231
title: Additional file 5 of CloneSifter: enrichment of rare clones from heterogeneous cell populations

description: Additional file 5: Table S7. Barcode_counts.
DOI: 10.6084/m9.figshare.13285228
title: Additional file 4 of CloneSifter: enrichment of rare clones from heterogeneous cell populations

description: Additional file 4: Table S6. Table of sgRNA-barcode sequences from the D458 clonal tracking experiment with CROP-seq based sgRNA-barcode library. The abundance of each sgRNA-barcode was calculated with normalized read counts and transformed by a base-10 logarithm (Methods: Clonal fitness measurements). Median ranks and median values of each sgRNA-barcode in each condition across replicates are listed. Identified barcode sets including JQ1 and DMSO are listed in the last column.
DOI: 10.6084/m9.figshare.13285226
title: Additional file 1 of Data from the European registry for patients with McArdle disease and other muscle glycogenoses (EUROMAC)

description: Additional file 1. Genetic variants according to clinical features.
DOI: 10.6084/m9.figshare.13284836
title: bladder cancer in a maintenance dialysis patient

description: 案例分析和实验室测试<br>
DOI: 10.6084/m9.figshare.13284836.v1
title: bladder cancer in a maintenance dialysis patient

description: 案例分析和实验室测试<br>
DOI: 10.25919/6793-zy46
title: Climatology of in situ gridded temperature, salinity and velocity along Western Australia coastline

description: The dataset was collected from 12 coastal mooring arrays off the southwest coast of Western Australia (WA) during 2009-2020, at depths ranging from 47m to 500m, as part of the IMOS program. It includes temperature data from SBE37?s SBE39?s, salinity data from Water Quality Monitors (WQM), and ocean current data from Acoustic Doppler Current Profiles (ADCP) and Nortex ADCP. Here, first version of daily gridded in-situ subsurface temperature, salinity and ocean current, and their climatology are presented. Monthly temperature is also included. This unique dataset offers an invaluable baseline perspective on physical water column properties and temporal variability in WA coastal waters. The data can be used to characterise subsurface features of extreme events such as marine heat waves, marine cold-spells, and to detect long-term change signals along WA coast, influenced by the Leeuwin Current and the wind-driven Capes Current. Here, first version of gridded in-situ subsurface climatological daily and monthly mean temperature, salinity and velocity, was calculated from those deployments. In addition, daily and monthly gridded time series dataset is also available. The data is collected by suite of moorings. It has a mix of Seabird Electronics SBE?37 temperature sensors, Seabird Electronics SBE39?s, Wetlabs Water Quality Meter (WQM), Teledyne RDI Workhorse Sentinel 600kHz and Nortek Continental ADCP instruments. Here, first version of gridded in-situ subsurface climatological daily and monthly mean temperature, salinity and velocity, was calculated from those deployments. In addition, daily and monthly gridded time series dataset is also available.
DOI: 10.25919/9zan-jz52
title: Climatology of in situ gridded temperature, salinity and velocity along Western Australia coastline

description: The dataset was collected from 12 coastal mooring arrays off the southwest coast of Western Australia (WA) during 2009-2020, at depths ranging from 47m to 500m, as part of the IMOS program. It includes temperature data from SBE37?s SBE39?s, salinity data from Water Quality Monitors (WQM), and ocean current data from Acoustic Doppler Current Profiles (ADCP) and Nortex ADCP. Here, first version of daily gridded in-situ subsurface temperature, salinity and ocean current, and their climatology are presented. Monthly temperature is also included. This unique dataset offers an invaluable baseline perspective on physical water column properties and temporal variability in WA coastal waters. The data can be used to characterise subsurface features of extreme events such as marine heat waves, marine cold-spells, and to detect long-term change signals along WA coast, influenced by the Leeuwin Current and the wind-driven Capes Current. Here, first version of gridded in-situ subsurface climatological daily and monthly mean temperature, salinity and velocity, was calculated from those deployments. In addition, daily and monthly gridded time series dataset is also available. The data is collected by suite of moorings. It has a mix of Seabird Electronics SBE?37 temperature sensors, Seabird Electronics SBE39?s, Wetlabs Water Quality Meter (WQM), Teledyne RDI Workhorse Sentinel 600kHz and Nortek Continental ADCP instruments. Here, first version of gridded in-situ subsurface climatological daily and monthly mean temperature, salinity and velocity, was calculated from those deployments. In addition, daily and monthly gridded time series dataset is also available.
DOI: 10.21227/rszn-bk55
title: HIS-RING-Fish

description: This dataset contains 1944 data, which are scanned by the HIS-RING PACT system.the data sampling rate of our system is 40 MSa/s,a 128-elements2.5MHzfull-view ring-shaped transducer with 30mm radius.continuous updating.....
DOI: 10.21227/4skf-ta10
title: HIS-RING-Fish

description: This dataset contains 1944 data, which are scanned by the HIS-RING PACT system.the data sampling rate of our system is 40 MSa/s,a 128-elements2.5MHzfull-view ring-shaped transducer with 30mm radius.continuous updating.....
DOI: 10.18170/dvn/gnw2b6
title: Replication Data for: Reduction of iron (hydro)oxide-bound arsenate: Evidence from high depth resolution sampling of a reducing aquifer in Yinchuan Plain, China

description: X-ray absorption fine structure and arsenic X-ray absorption near edge structure data of Yinchuan sediments.
DOI: 10.11577/1721364
title: Membrane protein megahertz crystallography at the European XFEL
DOI: 10.25375/uct.12196866
title: Effect of hydraulic residence time on biological sulphate reduction and elemental sulphur recovery in a single-stage hybrid linear flow channel reactor

description: This dataset contains relevant experimental data collected for the research described in the linked publication (Marais et al., 2020). This includes system operating conditions, measured pH and redox measurements as well as sulphate, sulphide and volatile fatty acid concentrations over the duration of the study required for monitoring process performance of the hybrid LFCR.<br>The study evaluates the effect of hydraulic residence time on biological sulphate reduction and sulphide oxidation kinetics within the hybrid LFCR process as well the recovery efficiency of elemental sulphur.<br><br>
DOI: 10.25375/uct.12196866.v1
title: Effect of hydraulic residence time on biological sulphate reduction and elemental sulphur recovery in a single-stage hybrid linear flow channel reactor

description: This dataset contains relevant experimental data collected for the research described in the linked publication (Marais et al., 2020). This includes system operating conditions, measured pH and redox measurements as well as sulphate, sulphide and volatile fatty acid concentrations over the duration of the study required for monitoring process performance of the hybrid LFCR.<br>The study evaluates the effect of hydraulic residence time on biological sulphate reduction and sulphide oxidation kinetics within the hybrid LFCR process as well the recovery efficiency of elemental sulphur.<br><br>
DOI: 10.15472/pq1wnv
title: Lista de peces migratorios del Chocó Biogeográfico - 2014

description: Muchas especies tienen como ruta o centro de conglomeración el Chocó Biogeográfico, que gracias a la alta gama de ambientes que presenta, brinda abundante y diversa oferta trófica, además de la disponibilidad de ecosistemas como playas, pantanos de ríos, ciénagas, lagunas costeras, humedales altos andinos y paramos, lo que hace que el territorio sea apetecido por diversos viajeros sin maletas, que emprenden grandes travesías para llegar a la calidez de cada uno de los ecosistemas de la región, donde no solo se reproducen, descansan o se alimentan, sino que también juegan papeles ecológicos claves, dado a que brindan importantes servicios ecosistémicos tales como: la polinización, dispersión de semillas, depredación de plagas, el servir de alimento a especies no migratorias, entre otros. Dado lo anterior se deben tomar medidas de manejo y administración, que desde la gestión ambiental se deben implementar a favor de la protección y conservación de estas especies y de sus hábitats, bajo la perspectiva de comprensión que se debe tener datos que nos permitan conocer las rutas de migración de las especies que en diferentes épocas del año ingresan al Chocó Biogeográfico con diferentes fines. Por lo anterior, este documento presenta los datos sobre el comportamiento de peces migratorios, aspectos ecológicos e identificación de sus rutas de movilidad en sentido Norte-Sur, hacia el Chocó Biogeográfico colombiano.
DOI: 10.18170/dvn/84gtxd
title: Replication Data for: Reduction of iron (hydro)oxide-bound arsenate: Evidence from high depth resolution sampling of a reducing aquifer in Yinchuan Plain, China

description: Sediment As and Fe mineralogy dataset of Yinchuan
DOI: 10.25375/uct.12199098
title: Effect of reactor geometry and electron donor on performance of the hybrid linear flow channel reactor

description: This dataset contains the relevant experimental data collected for the research study described in the linked publication (Marais et al., 2020). This includes measured pH and redox measurements as well as sulphate, sulphide and volatile fatty acid concentrations for monitoring process performance of the hybrid LFCR. The operating conditions are detailed.<br>In this study the hybrid LFCR was evaluated for process stability when scaling up. In addition the use of a cost effective electron donor is assessed as an alternative toward economical feasibility. investigating these parameters contribute toward the further development of the technology for large scale implimentation.
DOI: 10.25375/uct.12199098.v1
title: Effect of reactor geometry and electron donor on performance of the hybrid linear flow channel reactor

description: This dataset contains the relevant experimental data collected for the research study described in the linked publication (Marais et al., 2020). This includes measured pH and redox measurements as well as sulphate, sulphide and volatile fatty acid concentrations for monitoring process performance of the hybrid LFCR. The operating conditions are detailed.<br>In this study the hybrid LFCR was evaluated for process stability when scaling up. In addition the use of a cost effective electron donor is assessed as an alternative toward economical feasibility. investigating these parameters contribute toward the further development of the technology for large scale implimentation.
DOI: 10.25375/uct.13280216
title: A Comparative Analysis of the Performance and the Microbial Ecology of Biological Sulphate Reducing Reactor Systems

description: Dataset accompanying the PhD: A Comparative Analysis of the Performance and the Microbial Ecology of Biological Sulphate Reducing Reactor Systems
DOI: 10.25375/uct.13280216.v1
title: A Comparative Analysis of the Performance and the Microbial Ecology of Biological Sulphate Reducing Reactor Systems

description: Dataset accompanying the PhD: A Comparative Analysis of the Performance and the Microbial Ecology of Biological Sulphate Reducing Reactor Systems
DOI: 10.15472/n9gxpf
title: Lista de especies ícticas de la Cienaga de Beté, Municipio del Medio Atrato, Chocó -2018

description: Los ecosistemas cenagoso de la cuenca del Atrato contituyen espacion de una excepcional riqueza faunística fundamentales para la region del Atrato, cumpliendo con importantes funciones como lugar de descanso y alimentación de numerosas especies, siendo destacadas como áreas de importancia para especies migratorias tanto de peces como de aves, hábitat tipico de especies de anfibios como reptiles e importantes mamíferos, sin embargo la importancia individual de estos sistemas cenagosos del medio atrato se hace invaluable cuando se tiene en consideración los bienes y servicios ambientales que esto ecosistemas brindan a las comunidades asentadas a sus alrededores, proveyendo las principales fuentes abastecedoras de materias primas, recursos económicos y proteína a dichas comunidades. Sin embargo, a pesar de la relevancia que poseen los complejos cenagoso para la fauna y para las comunidades que de ellos se benefician, actualmente se encuentran expuestos a poteciales amenaza antrópicas que ponen en riesgo la capacidad de dicho ecosistema para generar bienes y servicios a las poblaciones humanas, lo que sumado a los vacios de información acerca de su biodiversidad y ecología, crean la necesidad de desarrolar dirigidas a generar conocimiento sobre sus potenciales faunísticos, el papel que las especies desempeñan en la funcionalidad y mantenimiento de estos ecosistemas y como toda esta dinámica se desarrolla en el tiempo. El levantamiento de la anterior información es de gran utilidad para la consolidación de instrumentos de manejo, ordenamiento y planificación de estos ecosistemas. Por lo tanto el presente estudio tiene como propósito monitorear los procesos ecológicos de la fauna que permitan identificar la denamiaca del estado de conservacion y la riqueza fuanistica de la ciénaga de Bete.
DOI: 10.21227/p0xp-dw04
title: Surge Arrester Historical Inspection Data

description: Distribution 20kV Surge Arrester Historical Inspection Data from year 2007 to 2019 andfrom an European utility company
DOI: 10.21227/hawz-m507
title: 20kV PILC Cable Historical Inspection Data

description: 20kV PILC Cable Historical Inspection Datafrom year 2007 to 2019 from an European utility company
DOI: 10.21227/3msa-8e34
title: 20kV XLPE Cable Historical Inspection Data

description: 20kV XLPE Cable Historical Inspection Data from year 2010 to 2019 from an European utility company
DOI: 10.6084/m9.figshare.13285526
title: Supplementary Material for: Acute Myeloid Leukemia Presenting as a Cardiac Mass

description: Leukemias are the most common childhood malignancy. It is a systemic disease presenting with different signs and symptoms. Extramedullary manifestations, in particular myeloid sarcoma (MS), are extremely rare, often challenging to identify, even more challenging to diagnose, and more than often misdiagnosed owing to its similarity with other solid tumors. We describe a previously healthy boy, aged 4 years, who had a cardiac mass lesion, presumed to be a MS, noted in the right atrium at the time of initial routine echocardiography. The lesion resolved without surgical intervention following the institution of multi-agent chemotherapy.
DOI: 10.6084/m9.figshare.13258964
title: Data S2 from Assessing the strength of case growth trends in the coronavirus pandemic

description: Country population data (csv)
DOI: 10.6084/m9.figshare.13258964.v1
title: Data S2 from Assessing the strength of case growth trends in the coronavirus pandemic

description: Country population data (csv)
DOI: 10.6084/m9.figshare.13258973
title: Data S1 from Assessing the strength of case growth trends in the coronavirus pandemic

description: Daily new case count data on 4 August 2020 (csv)
DOI: 10.6084/m9.figshare.13258973.v1
title: Data S1 from Assessing the strength of case growth trends in the coronavirus pandemic

description: Daily new case count data on 4 August 2020 (csv)
DOI: 10.5281/zenodo.4289428
title: Reference flow VCF for pre-built genomes

description: Pre-built genomes (in VCF format) for the RandFlow-LD and RandFlow-LD-26 methods in reference flow. The references can be built using the reference flow software (https://github.com/langmead-lab/reference_flow). An archival version of the software is available at http://doi.org/10.5281/zenodo.4287778 The reference flow method is described at https://www.biorxiv.org/content/10.1101/2020.03.03.975219v4
DOI: 10.5281/zenodo.4289427
title: Reference flow VCF for pre-built genomes

description: Pre-built genomes (in VCF format) for the RandFlow-LD and RandFlow-LD-26 methods in reference flow. The references can be built using the reference flow software (https://github.com/langmead-lab/reference_flow). An archival version of the software is available at http://doi.org/10.5281/zenodo.4287778 The reference flow method is described at https://www.biorxiv.org/content/10.1101/2020.03.03.975219v4
DOI: 10.6084/m9.figshare.13285514.v2
title: Solid-state sources for bright single photons with orbital angular momentum

description: Photons with a helical phase front, that is, twisted photons can carry a discrete, in principle, unlimited, but quantized amount of orbital angular momentum (OAM). Twisted single photons, hence, constitute a high-dimensional quantum system with information processing abilities beyond the two-level single-photon qubits. To date, the generation of single photons carrying OAM relies on the nonlinear process in bulk crystals, e.g., spontaneous parametric down-conversion (SPDC), which limits both the efficiency and the scalability of the source. Here, we present a solid-state source of bright single photons in an OAM superposition state with singlephoton purity of g<sup>(2)</sup>(0) = 0.115(1) and collection efficiency of 23(4)%. The mode purity of the single-photon OAM states is further examined via projection measurements. Further developments of integrated quantum photonic devices with pure OAM states as an additional degree of freedom may enable high-dimensional quantum information processing. <br>
DOI: 10.6084/m9.figshare.13285514.v1
title: Solid-state sources for bright single photons with orbital angular momentum

description: Photons with a helical phase front, that is, twisted photons can carry a discrete, in principle, unlimited, but quantized amount of orbital angular momentum (OAM). Twisted single photons, hence, constitute a high-dimensional quantum system with information processing abilities beyond the two-level single-photon qubits. To date, the generation of single photons carrying OAM relies on the nonlinear process in bulk crystals, e.g., spontaneous parametric down-conversion (SPDC), which limits both the efficiency and the scalability of the source. Here, we present a solid-state source of bright single photons in an OAM superposition state with singlephoton purity of g<sup>(2)</sup>(0) = 0.115(1) and collection efficiency of 23(4)%. The mode purity of the single-photon OAM states is further examined via projection measurements. Further developments of integrated quantum photonic devices with pure OAM states as an additional degree of freedom may enable high-dimensional quantum information processing. <br>
DOI: 10.17632/wwbpgtnzj7.1
title: Data for: Paleobasinal to band-scale REE+Y distribution in Iron Formations from Carajás, Amazon Craton, Brazil
DOI: 10.5281/zenodo.4288943
title: Raw results of WindNODE_ABW

description: Raw and processed model results of WindNODE_ABW. Extract data with <pre><code class="language-bash">tar -xf WindNODE_ABW_raw-results_2020-08-20_003243.tar.gz</code></pre> preferably directly to <pre><code class="language-bash">~/.windnode_abw/results/</code></pre>
DOI: 10.5281/zenodo.4288942
title: Raw results of WindNODE_ABW

description: Raw and processed model results of WindNODE_ABW. Extract data with <pre><code class="language-bash">tar -xf WindNODE_ABW_raw-results_2020-08-20_003243.tar.gz</code></pre> preferably directly to <pre><code class="language-bash">~/.windnode_abw/results/</code></pre>