cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26093/cds/vizier/ba-xw-n
title: X-ray & opt. light curves of XTE J1859+226

description: VizieR online Data Catalogue associated with article published in journal Astrophysical Journal with title ' An optically discovered outburst from XTE J1859+226.' (bibcode: 2023ApJ...956...21B)
DOI: 10.5281/zenodo.17713781
title: scPII Benchmarking Results

description: Contains all the benchmarking results performed on 16 CCLE scRNA-seq pan-cancer datasets according to the following benchmarking schemes -



Testing 4 GRNS construction algorithms (Pearson, Spearman, GRNBoost2, pcNet) to evaluate the performance of scPII.

Testing explained variance cutoff for optimal performance of scPII with GRNBoost2-derived GRNs.

Testing runtimes and accuracy of scPII against virtual KO algorithms (GenKI and scTenifoldKnk) in 3 CCLE scRNA-seq cell lines.


File naming convention 

CCLE_Benchmark -



scPII summary files - {algorithm}_{CellLine}_{InteractionCutOff}_{ProportionOfExplainedVariance}_scPII_Summary.csv

Median gene KO effect of top 50 genes by algorithm - {algorithm}_GeneKOEffect_{InteractionCutOff}_{ProportionOfExplainedVariance}_Medians_P.csv


VirtualKO_Benchmark -



scRNA-seq-derived-GRN used for benchmarking - {CellLine}_{algorithm}_GRN.npz

Summary files for each algorithm - {CellLine}_{algorithm}_Summary.csv

Compiled scores from three algorithms - {CellLine}_Benchmark_Data.csv
DOI: 10.5281/zenodo.17713780
title: scPII Benchmarking Results

description: Contains all the benchmarking results performed on 16 CCLE scRNA-seq pan-cancer datasets according to the following benchmarking schemes -



Testing 4 GRNS construction algorithms (Pearson, Spearman, GRNBoost2, pcNet) to evaluate the performance of scPII.

Testing explained variance cutoff for optimal performance of scPII with GRNBoost2-derived GRNs.

Testing runtimes and accuracy of scPII against virtual KO algorithms (GenKI and scTenifoldKnk) in 3 CCLE scRNA-seq cell lines.


File naming convention 

CCLE_Benchmark -



scPII summary files - {algorithm}_{CellLine}_{InteractionCutOff}_{ProportionOfExplainedVariance}_scPII_Summary.csv

Median gene KO effect of top 50 genes by algorithm - {algorithm}_GeneKOEffect_{InteractionCutOff}_{ProportionOfExplainedVariance}_Medians_P.csv


VirtualKO_Benchmark -



scRNA-seq-derived-GRN used for benchmarking - {CellLine}_{algorithm}_GRN.npz

Summary files for each algorithm - {CellLine}_{algorithm}_Summary.csv

Compiled scores from three algorithms - {CellLine}_Benchmark_Data.csv
DOI: 10.5281/zenodo.18422882
title: Emergency Obstetric Care Access Deprivation Modelled Dataset in Kisumu, Kenya

description: Produced as part of the IDEAMAPS Data Ecosystem project, this dataset maps the degree of access deprivation to Emergency Obstetric Care. It is a spatial representation of how women of childbearing age (16-49 years) can reach, choose and receive obstetric care during an emergency. In particular, the model aims to depict how these access might impact women during the critical interpartum and delivery phases. These phases have been prioritised considering community priorities and the high levels of maternal mortality in the study areas.
DOI: 10.5281/zenodo.18422881
title: Emergency Obstetric Care Access Deprivation Modelled Dataset in Kisumu, Kenya

description: Produced as part of the IDEAMAPS Data Ecosystem project, this dataset maps the degree of access deprivation to Emergency Obstetric Care. It is a spatial representation of how women of childbearing age (16-49 years) can reach, choose and receive obstetric care during an emergency. In particular, the model aims to depict how these access might impact women during the critical interpartum and delivery phases. These phases have been prioritised considering community priorities and the high levels of maternal mortality in the study areas.
DOI: 10.15468/weknsr
title: University of Georgia Herbarium
DOI: 10.15468/dl.8xg5g7
title: Occurrence Download

description: A dataset containing 831 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus albicaulis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada"
 ]
 },
 "Year is greater than or equal to 1970",
 "Year is less than or equal to 2005"
 ]
}

 The dataset includes 831 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008137-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18118832
title: Fluid-induced magnetic enhancement in sandstone friction experiments: implications for coseismic fault temperature estimates

description: Rock magnetic data and Supporting Information for the study “Fluid-induced magnetic enhancement in sandstone friction experiments: implications for coseismic fault temperature estimates” submitted to Geophysical Research Letters. Details of the samples, experimental methods, and data interpretation are provided in the manuscript and the Supporting Information.
DOI: 10.5281/zenodo.18118833
title: Fluid-induced magnetic enhancement in sandstone friction experiments: implications for coseismic fault temperature estimates

description: Rock magnetic data and Supporting Information for the study “Fluid-induced magnetic enhancement in sandstone friction experiments: implications for coseismic fault temperature estimates” submitted to Geophysical Research Letters. Details of the samples, experimental methods, and data interpretation are provided in the manuscript and the Supporting Information.
DOI: 10.5281/zenodo.17663086
title: MetaHQ: v1.0.1

description: Data required to utilize the metahq-cli Python package. 

 

Changes made:



Changed the "samp-class-zoo" source name for our in-house curation to "KrishnanLab".

Changed the following source names to a consistent naming convention:



Johnson 2023 --> Johnson_2023

ursa --> URSA

ursa_hd --> URSA_HD

golightly_etal --> Golightly_2018

sirota --> Sirota_2011

gu_etal --> Gu_2023

cello --> Cello

disign_atlas --> DiSignAtlas

creeds --> CREEDS



Added additional system terms for UBERON/CL. The previous list was too limiting.



This affects which annotations are considered "too general".



Added additional sex and age annotations from the "Johnson_2023" source.

Fixed incorrect disease annotations by "Johnson_2023" for GSE20436.

Added sex annotations from "BGEE."

Removed additional lingering general annotations.

Added additional cleaning steps removing empty annotations and/or unacceptable platforms.

Fixed typo "eldery_adult" to "elderly_adult" age group.
DOI: 10.5281/zenodo.18462463
title: MetaHQ: v1.0.1

description: Data required to utilize the metahq-cli Python package. 

 

Changes made:



Changed the "samp-class-zoo" source name for our in-house curation to "KrishnanLab".

Changed the following source names to a consistent naming convention:



Johnson 2023 --> Johnson_2023

ursa --> URSA

ursa_hd --> URSA_HD

golightly_etal --> Golightly_2018

sirota --> Sirota_2011

gu_etal --> Gu_2023

cello --> Cello

disign_atlas --> DiSignAtlas

creeds --> CREEDS



Added additional system terms for UBERON/CL. The previous list was too limiting.



This affects which annotations are considered "too general".



Added additional sex and age annotations from the "Johnson_2023" source.

Fixed incorrect disease annotations by "Johnson_2023" for GSE20436.

Added sex annotations from "BGEE."

Removed additional lingering general annotations.

Added additional cleaning steps removing empty annotations and/or unacceptable platforms.

Fixed typo "eldery_adult" to "elderly_adult" age group.
DOI: 10.15468/dl.zccc7d
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lagopus muta millaisi",
 "Year 1980-2026"
 ]
}

 The dataset includes 77 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008138-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/vcc4g3
title: University of Mary Washington Herbarium
DOI: 10.15468/sgspw4
title: University of Louisiana at Monroe Herbarium, R. Dale Thomas Collection

description: The R. Dale Thomas Collection - University of Louisiana Monroe (NLU) collection was transferred to the Botanical Research Institute of Texas in 2017. Additionally in 2018-2019, more than 50,000 NLU specimens were transferred to the Shirley C. Tucker Herbarium (LSU) at Lousiana State University. Please contact Tiana Rehman (trehman@brit.org) with any questions regarding the collection.
DOI: 10.15468/dl.63cx5b
title: Occurrence Download

description: A dataset containing 7835 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gentianella germanica, Gentianella germanica, Gentianella obtusifolia, Gentianella praecox, Gentianella praecox, Gentianella praecox, Gentiana germanica, Gentiana germanica, Gentiana germanica, Gentiana aspera, Gentianella aspera, Gentianella aspera, Gentiana bohemica, Gentianella bohemica)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 7835 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008140-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yszrbt
title: Occurrence Download

description: A dataset containing 16261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gentianopsis ciliata, Gentiana ciliata, Gentiana ciliata, Gentiana ciliata, Gentiana ciliata, Gentianella ciliata)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 16261 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008141-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/txxhcj
title: University of Mississippi, Thomas M. Pullen Herbarium

description: The Pullen Herbarium (MISS) collection is located on the campus of the University of Mississippi in Oxford, MS, and consists of over 80,000 vascular plant specimens, as well as non vascular plants, slime molds and macrofungi.  With funding from the National Science Foundation, the collection is housed in a compactor system and the specimen data and images have been digitized.  Vascular plant specimens can be searched on SERNEC and macrofungi are displayed in MycoPortal.
DOI: 10.15468/dl.k6basm
title: Occurrence Download

description: A dataset containing 10050 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Geranium dissectum)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 10050 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008142-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18462318
title: Data for spatial heterogeneity in technology costs and preferences for direct air capture in the United States
DOI: 10.5281/zenodo.18462317
title: Data for spatial heterogeneity in technology costs and preferences for direct air capture in the United States
DOI: 10.15468/dl.w9rkac
title: Occurrence Download

description: A dataset containing 2461 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "NetworkKey is 99d66b6c-9087-452f-a9d4-f15f2c2d0e7e",
 "TaxonKey is Chordata"
 ]
 },
 "TaxonKey is one of (Thamnophis hammondii [GBIF Backbone Taxonomy])"
 ]
}

 The dataset includes 2461 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008143-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18462438
title: Влияние цифровой трансформации на финансовые показатели китайских публичных компаний
DOI: 10.5281/zenodo.18461564
title: Влияние цифровой трансформации на финансовые показатели китайских публичных компаний
DOI: 10.15468/dl.qge284
title: Occurrence Download

description: A dataset containing 413931 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-119.6834 49.39399,-119.48779 49.39399,-119.48779 49.65436,-119.6834 49.65436,-119.6834 49.39399))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 413931 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008118-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pq8fph
title: Occurrence Download

description: A dataset containing 15260 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ateles"
 ]
}

 The dataset includes 15260 records from 210 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008144-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/hfzqw5
title: University of North Carolina at Pembroke Herbarium

description: PEMB has about 4,500 specimens, and the collection focuses on flora of the Southeastern United States. Important collectors include Dr. Lisa Kelly (Flora of Huggins Island; Onslow County, North Carolina, USA), Elizabeth Workman (Floristic Survey of The Lumber River Conservancy's Sampson's Landing; Robeson County, North Carolina, USA), Linda Oxendine, and Robert Kral. In 2019 NCZP (ca 2600 specimens) was transferred to PEMB. The Zoo herbarium includes approximately 2600 specimen records, representing 1400 species. Most specimens were collected from the vicinity of the North Carolina Zoological Park just south of Asheboro (Randolph County, North Carolina, USA), but cultivated plants and exotic plants common to the diets of zoo animals are also in the collection. The collection was the brainchild of the herbarium&rsquo;s first curator and primary collector, Pete Diamond. NCZP's second curator, Nell Allen, expanded the collection to document flora of natural areas managed by the Zoo. PEMB is open to visitors &amp; researchers by prior appointment with Curator Dr. Lisa Kelly.
DOI: 10.15468/g5jyb6
title: University of North Carolina, Asheville

description: We have a collection of about 7500 specimens that are primarily from the southern Appalachians. These include about 2500 specimens from Polk County and vicinity that were collected by O. M. Freeman in the 1950's, and about 1500 specimens from the Bent Creek Herbarium of the U.S. Forest Service.
DOI: 10.15468/mpjput
title: University of South Carolina Salkehatchie Herbarium
DOI: 10.15468/2n8ccv
title: University of South Carolina Upstate Herbarium

description: The herbarium at the University of South Carolina Upstate (formerly University of South Carolina Spartanburg) houses a collection of bryophytes and vascular plants with a focus on the Piedmont region of South Carolina. The collection was begun in the 1970s and most specimen were collected by or under the supervision of Dr. Gillian Newberry.
DOI: 10.15468/dl.76fcsx
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CAN.2_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Anabrus simplex"
 ]
}

 The dataset includes 36 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008147-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ewhjhd
title: Occurrence Download

description: A dataset containing 711 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Monolena primuliflora",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 711 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008145-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18462071
title: Data products utilized in "A Stellar Magnesium to Silicon ratio in the atmosphere of an exoplanet"

description: This repository contains the data products and model spectra used in the main analysis of the paper 'A Stellar Magnesium to Silicon ratio in the atmosphere of an exoplanet', submitted to Nature Communications. See the README file for details on files, including the specific files used to generate figures within the manuscript.
DOI: 10.5281/zenodo.17875071
title: Data products utilized in "A Stellar Magnesium to Silicon ratio in the atmosphere of an exoplanet"

description: This repository contains the data products and model spectra used in the main analysis of the paper 'A Stellar Magnesium to Silicon ratio in the atmosphere of an exoplanet', submitted to Nature Communications. See the README file for details on files, including the specific files used to generate figures within the manuscript.
DOI: 10.15468/dl.m6yvrm
title: Occurrence Download

description: A dataset containing 207 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is BioAcoustica: Wildlife Sounds Database"
 ]
}

 The dataset includes 207 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008146-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d8exda
title: Occurrence Download

description: A dataset containing 5688 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ortmanniana ligamentina",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 5688 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008149-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p2h36u
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bertholletia excelsa"
 ]
}

 The dataset's 2 records were derived from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008119-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60790/p2wjov
title: CITOBOT AI

description: The CITOBOT AI dataset contains anonymized cervical colposcopy images and associated screening labels collected in a real-world clinical setting as part of a public hospital–based cervical cancer screening program in Colombia. The dataset was created to support the development, validation, and evaluation of artificial intelligence models for cervical cancer risk stratification using image-based approaches. Images were obtained during routine colposcopy examinations following standard clinical protocols and curated to ensure sufficient quality for automated analysis. Screening labels were defined using colposcopy-guided biopsy as the reference standard and categorized for screening purposes. The dataset reflects the variability of routine clinical practice and is intended to facilitate research on scalable digital health solutions for cervical cancer screening, particularly in resource-limited settings.
DOI: 10.15468/dl.cgq985
title: Occurrence Download

description: A dataset containing 2855 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus hartwegii"
 ]
}

 The dataset includes 2855 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008151-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/jn9x8x
title: University of Southern Mississippi Herbarium

description: Founded in 1964, the University of Southern Mississippi Herbarium specializes in vascular plants of Mississippi and the southeastern U.S., with a particular emphasis on aquatic and wetland plants.
DOI: 10.5281/zenodo.18462467
title: Clonal hematopoiesis of indeterminate potential is associated with acute kidney injury
DOI: 10.15468/ok8qvz
title: University of Tennessee Vascular Herbarium

description: The TENN vascular collection has a strong emphasis on widespread and/or temperate taxa. Even though the collection houses representative specimens of the world's flora, it is unique in having the largest collection of specimens from the state of Tennessee, the historical collections documenting the flora of the Great Smoky Mountains National Park (a World Biosphere Reserve), and the large, general collection from throughout the southern Appalachians. Significant and representative collections are also present from the remainder of the U. S., including Alaska, Central and South America, and Afro-Eurasia. The pteridophyte collection is more cosmopolitan than the rest of the vascular plant collection due, in large part, to the collecting and exchange of A. M. Evans and A. J. Sharp.
DOI: 10.15468/b53tq6
title: University of Tennessee, Chattanooga Herbarium

description: Vascular Herbarium at the University of Tennessee at Chattanooga