cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25387/g3.9249245.v1
title: Supplemental Material for Fehr et al., 2019

description: Figure S1: Fraction of genetic interconnectivity signs inferred correctly from synthetic data. Figure S2: Training error of SA-inferred gene circuits. Figure S3: Inference of hg and kinetic parameters from synthetic data. Figure S4: Comparison of the spatiotemporal pattern of gap gene expression with the output of gene circuits inferred with FIGR and SA. Table S1: User-defined options and parameters utilized in FIGR code. File S1: Alternative method for determining kinetic parameters.
DOI: 10.6084/m9.figshare.3761562.v1266
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.9999773
title: Supplementary_File_1.tar.gz

description: This package include the raw data and perl scripts for the data processing of sgDesigner.
DOI: 10.6084/m9.figshare.9999773.v1
title: Supplementary_File_1.tar.gz

description: This package include the raw data and perl scripts for the data processing of sgDesigner.
DOI: 10.6084/m9.figshare.9999980
title: Supplementary_File_2.tar.gz

description: This package includes the dataset feature files and python script for the model exploration and validation of sgDesigner.
DOI: 10.6084/m9.figshare.9999980.v1
title: Supplementary_File_2.tar.gz

description: This package includes the dataset feature files and python script for the model exploration and validation of sgDesigner.
DOI: 10.6084/m9.figshare.9945044.v2
title: Analysis of Within-host Evolution of Plasmodium falciparum during treatment with Artemisinin Combination Therapies

description: Supporting information for data used in the "Analysis of Within-host Evolution of Plasmodium falciparum during treatment with Artemisinin Combination Therapies"<br>
DOI: 10.25405/data.ncl.9621050.v1
title: Data underpinning article THE FOOD-WATER QUALITY NEXUS IN PERIURBAN AQUACULTURES DOWNSTREAM OF BANKGOK, THAILAND

description: The data set comprises trace organic chemical concentrations, and molecular microbiology data comparing water and sediment quality in canals and aquaculture ponds southwest of Bangkok, Thailand.
DOI: 10.25405/data.ncl.9994793.v1
title: Data supporting publication: Turbulent radial thermal counterflow in the framework of the HVBK model

description: Numerical data supporting results illustrated by Figures 1-6 of the publication<br>
DOI: 10.6084/m9.figshare.3761562.v1267
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v1268
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.25386/genetics.9976139
title: Supplemental Material for Daskalov et al., 2019

description: Eleven supplementary figures, two supplementary tables and one supplementary video file.
DOI: 10.25386/genetics.9976139.v1
title: Supplemental Material for Daskalov et al., 2019

description: Eleven supplementary figures, two supplementary tables and one supplementary video file.
DOI: 10.6084/m9.figshare.3761562.v1269
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.25405/data.ncl.9994739.v1
title: Quantum Experience data for quantum witness test of non-macrorealistic cat states

description: Raw data from IBM Q5 and Q14 data for computing the quantum witness values. Data for n=2,4,6 qubits. Data from calculating measurement invasiveness parameters.<br>
DOI: 10.6084/m9.figshare.10011815
title: Fondriest_JGR_2019_repository

description: structural data; kinematic data; stress inversion file;
DOI: 10.6084/m9.figshare.10011815.v1
title: Fondriest_JGR_2019_repository

description: structural data; kinematic data; stress inversion file;
DOI: 10.25387/g3.9943682
title: Supplemental Material for Bhatta et al., 2019

description: Figure S1 contains Manhattan and quantile-quantile (Q-Q) plots for 35 traits in 143 diverse wheat accessions obtained from a genome-wide association study. Figure S2 contains principal component biplot analysis among agronomic, diseases resistance, and grain quality traits in 143 diverse wheat accessions. Figure S3. Physical distribution of 46,268 genotyping-by-sequencing derived SNPs within a 1-Mb window size on 21 chromosomes (Chr) of 143 diverse accession of wheat. Table S1 contain details of the 143 diverse wheat accessions used in this study. Table S2. Genotype-by-sequencing derived SNPs identified in 143 diverse wheat lines. Table S3 contain details of significant markers associated with 35 traits in 143 diverse wheat accessions grown in two seasons (2017 and 2018) in Siberia. Table S4 contains details of potential candidate gene functions harboring SNPs affecting agronomic, disease resistance, and grain quality traits from two years (2017 and 2018) of experiments conducted in Siberia using 143 diverse wheat accessions. Table S5. Genomic fingerprinting of 143 diverse accessions of wheat showing distribution of favorable (1), unfavorable (0) and heterozygote (0.5) alleles of significant marker-trait associations identified in this study.
DOI: 10.25387/g3.9943682.v1
title: Supplemental Material for Bhatta et al., 2019

description: Figure S1 contains Manhattan and quantile-quantile (Q-Q) plots for 35 traits in 143 diverse wheat accessions obtained from a genome-wide association study. Figure S2 contains principal component biplot analysis among agronomic, diseases resistance, and grain quality traits in 143 diverse wheat accessions. Figure S3. Physical distribution of 46,268 genotyping-by-sequencing derived SNPs within a 1-Mb window size on 21 chromosomes (Chr) of 143 diverse accession of wheat. Table S1 contain details of the 143 diverse wheat accessions used in this study. Table S2. Genotype-by-sequencing derived SNPs identified in 143 diverse wheat lines. Table S3 contain details of significant markers associated with 35 traits in 143 diverse wheat accessions grown in two seasons (2017 and 2018) in Siberia. Table S4 contains details of potential candidate gene functions harboring SNPs affecting agronomic, disease resistance, and grain quality traits from two years (2017 and 2018) of experiments conducted in Siberia using 143 diverse wheat accessions. Table S5. Genomic fingerprinting of 143 diverse accessions of wheat showing distribution of favorable (1), unfavorable (0) and heterozygote (0.5) alleles of significant marker-trait associations identified in this study.
DOI: 10.25405/data.ncl.8859443.v1
title: In situ observation of nanoparticle exsolution from perovskite oxides; from atomic scale mechanistic insight to new nanostructures

description: Understanding and controlling the formation of nanoparticles at the surface of functional oxide supports is critical for tuning activity and stability for catalytic and energy conversion applications. Here we use a latest generation environmental transmission electron microscope to follow the exsolution of individual nanoparticles at the surface of perovskite oxides, with unprecedented spatial and temporal resolution. Qualitative and quantitative analysis of the data reveals the atomic scale processes that underpin the formation of the socketed, strain-inducing interface that confers exsolved particles their unique stability and reactivity. This insight also enabled us to discover that the shape of exsolved particles can be controlled by changing the atmosphere in which exsolution is carried out and additionally, this could also produce intriguing new heterostructures consisting of metal-metal oxide coupled nanoparticles. Our results not only provide insight into the <i>in situ</i> formation of nanoparticles, but also exemplify new dimensions for tailoring nanostructures and nano-interfaces.
DOI: 10.26180/5db00e81928be
title: Test - ignore

description: Test - ignore
DOI: 10.25386/genetics.9872126
title: Supplemental Material for Kono et al., 2019

description: Supplementary materials from "The fate of deleterious variants in a barley genomic prediction population"
DOI: 10.25386/genetics.9872126.v1
title: Supplemental Material for Kono et al., 2019 (partial resubmission)

description: Supplementary materials from "The fate of deleterious variants in a barley genomic prediction population"
DOI: 10.25386/genetics.9872126.v2
title: Supplemental Material for Kono et al., 2019

description: Supplementary materials from "The fate of deleterious variants in a barley genomic prediction population"
DOI: 10.25573/data.10005215
title: Dataset: Factors influencing blue carbon accumulation across a 32‐year chronosequence of created coastal marshes

description: Saline coastal marshes are blue carbon ecosystems with relatively high soil carbon (C) stocks and high rates of soil C accumulation. Loss of saline wetlands due to relative sea‐level rise, land‐use change, and hydrologic alterations liberates previously stored C and reduces the capacity for future C sequestration. Widespread wetland loss has prompted marsh restoration and creation projects around the world; however, little is known about the timescale and capacity for created marshes to function as blue C sinks and the role of environmental conditions in mediating soil C accumulation in restoration sites. Using a chronosequence of five created saline marshes ranging in age from 5 to 32 yr and two adjacent natural reference marshes in southwest Louisiana, USA, short‐ and longer‐term C accumulation rates (SCAR and LCAR, respectively) were determined using feldspar marker horizons and peat depth in cores at six locations in each marsh. Created marshes ranged in elevation from −12 to 41 cm (NAVD88) and supported assorted plant community compositions driven by local environmental conditions. SCAR ranged from 75 to 430 g C·m<sup>−2</sup>·yr<sup>−1</sup>, which were comparable in the two youngest and two oldest marshes. Longer‐term CAR ranged from 18 to 99 g C·m<sup>−2</sup>·yr<sup>−1</sup> but did not significantly differ among marshes of different ages. Our findings indicate that LCAR in these created marshes were influenced by site‐specific environmental conditions (i.e., stem density and mineral sediment) rather than marsh age. Results suggest that conditions appropriate for the establishment of vegetation with high stem densities, such as Distichlis spicata and Spartina patens, may facilitate higher LCAR in created marshes, which may be useful for restoration project planning and mitigation of climate change.<br>
DOI: 10.6084/m9.figshare.3761562.v1272
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.10031900.v1
title: Test data

description: Test data
DOI: 10.6084/m9.figshare.8198687.v2
title: A new tool to assess ecosystem health in large subtropical reservoirs: Development and validation of a Planktonic Index of Biotic Integrity

description: We developed and validated a Planktonic Index of Biotic Integrity for subtropical reservoirs to assess their ecosystem health. For this purpose, we analyzed the phytoplankton and zooplankton communities and determined reservoir trophic status in the Paranapanema River system (Southeast Brazil). Eleven dams were constructed in the main course of this river to supply hydropower plants. Three of the reservoirs are accumulation systems (i.e. with high water retention times), whereas the others are run-of-the-river systems. For the study the three larger reservoirs (Jurumirim, Chavantes and Capivara) were selected. Physical, chemical, and biological (phytoplankton and zooplankton) data were obtained in two sampling campaigns carried out in March (wet season) and October (dry season) of 2011. For each reservoir we sampled six stations, arranged on a gradient established between the lotic (Paranapanema River entrance) and lentic (dam) areas. According to the Trophic State Index for tropical/subtropical reservoirs, the sampling stations were categorized between ultraoligotrophic and mesotrophic. Four metrics achieved significant discrimination (out of a set of 20 candidate metrics). The individual metric scores were summed to provide a Planktonic Index of Biotic Integrity score, which ranged as Mesotrophic (4-9), Oligotrophic (10-14) and Ultraoligotrophic (15-20), corresponding to the classification of fair, good and excellent, respectively. Following the longitudinal sequence, Jurumirim was classified as Oligotophic (Good) and both Chavantes and Capivara as Ultraoligotrophic (Excellent). This study demonstrated that the Planktonic Index of Biotic Integrity is a potential tool for monitoring large subtropical reservoirs, as planktonic organisms are sensitive to environmental changes and this index integrates distinct temporal and spatial scales.
DOI: 10.6084/m9.figshare.4319204.v2
title: of Genotyping-by-sequencing provides the discriminating power to investigate the subspecies of Daucus carota (Apiaceae)

description: of Genotyping-by-sequencing provides the discriminating power to investigate the subspecies of Daucus carota (Apiaceae)
DOI: 10.6084/m9.figshare.4319342.v2
title: of Genotyping-by-sequencing provides the discriminating power to investigate the subspecies of Daucus carota (Apiaceae)

description: of Genotyping-by-sequencing provides the discriminating power to investigate the subspecies of Daucus carota (Apiaceae)
DOI: 10.6084/m9.figshare.9697574.v2
title: of Diurnal regulation of SDG2 and JMJ14 by circadian clock oscillators orchestrates histone modification rhythms in Arabidopsis

description: of Diurnal regulation of SDG2 and JMJ14 by circadian clock oscillators orchestrates histone modification rhythms in Arabidopsis
DOI: 10.25387/g3.10010408
title: Supplemental Material for Laffafian and Tepass, 2019

description: Table S1, Figures S1, S2, S3 and S4<br>
DOI: 10.6084/m9.figshare.4634284.v2
title: of Selective serotonin reuptake inhibitors versus placebo in patients with major depressive disorder. A systematic review with meta-analysis and Trial Sequential Analysis

description: of Selective serotonin reuptake inhibitors versus placebo in patients with major depressive disorder. A systematic review with meta-analysis and Trial Sequential Analysis
DOI: 10.6084/m9.figshare.4634428.v2
title: Additional file 3: Table S1. of Selective serotonin reuptake inhibitors versus placebo in patients with major depressive disorder. A systematic review with meta-analysis and Trial Sequential Analysis

description: Trial characteristics. (XLS 80 kb)
DOI: 10.6084/m9.figshare.5182045.v2
title: of TRPA1 channels promote astrocytic Ca2+ hyperactivity and synaptic dysfunction mediated by oligomeric forms of amyloid-Î˛ peptide

description: of TRPA1 channels promote astrocytic Ca2+ hyperactivity and synaptic dysfunction mediated by oligomeric forms of amyloid-Î˛ peptide
DOI: 10.6084/m9.figshare.4906295.v2
title: of Meta-analysis of the parasitic phase traits of Haemonchus contortus infection in sheep

description: of Meta-analysis of the parasitic phase traits of Haemonchus contortus infection in sheep
DOI: 10.6084/m9.figshare.4784887.v2
title: of Concordance analysis of microarray studies identifies representative gene expression changes in Parkinsonâ s disease: a comparison of 33 human and animal studies

description: of Concordance analysis of microarray studies identifies representative gene expression changes in Parkinsonâ s disease: a comparison of 33 human and animal studies
DOI: 10.6084/m9.figshare.4784995.v2
title: of Concordance analysis of microarray studies identifies representative gene expression changes in Parkinsonâ s disease: a comparison of 33 human and animal studies

description: of Concordance analysis of microarray studies identifies representative gene expression changes in Parkinsonâ s disease: a comparison of 33 human and animal studies
DOI: 10.6084/m9.figshare.4523618.v2
title: of Pseudorabies virus infection (Aujeszky’s disease) in an Iberian lynx (Lynx pardinus) in Spain: a case report

description: of Pseudorabies virus infection (Aujeszky’s disease) in an Iberian lynx (Lynx pardinus) in Spain: a case report
DOI: 10.6084/m9.figshare.4523642.v2
title: of Pseudorabies virus infection (Aujeszky’s disease) in an Iberian lynx (Lynx pardinus) in Spain: a case report

description: of Pseudorabies virus infection (Aujeszky’s disease) in an Iberian lynx (Lynx pardinus) in Spain: a case report
DOI: 10.6084/m9.figshare.4483340.v2
title: Additional file 3: of Computational approach to predict species-specific type III secretion system (T3SS) effectors using single and multiple genomes

description: Top 40 predictions of T3SS effectors for Phase 1 and Phase 2 by GenSET. Each protein in the testing sets were given a value (true probability) based on the training (voting) algorithm that takes the average of the probabilities given by the five algorithms. The proteins were then ranked based on size of the averaged true probability. Only the top 40 proteins with scores of 0.5 and above are listed. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.4483352.v2
title: Additional file 2: of Computational approach to predict species-specific type III secretion system (T3SS) effectors using single and multiple genomes

description: Algorithm performance of five organisms using the filtered and unfiltered data sets for GenSET Phase 1 and Phase 2 studies. (PPV: precision value; TPR: sensitivity; SPC: specificity; AUC: area under the curve). (XLSX 1150 kb)
DOI: 10.6084/m9.figshare.4483376.v2
title: Additional file 4: of Computational approach to predict species-specific type III secretion system (T3SS) effectors using single and multiple genomes

description: Comparison of top 40 predictions of T3SS effectors in S. Typhimurium, E. coli, P. syringae, and S. dysenteriae by EffectiveT3, T3MM, BPBAac, and GenSET 1. EffectiveT3 program was from Arnold et al. 2009 [10]; T3MM program was from Wang et al., 2013 [16]; and BPBAac program was from Wang et al., 2011 [12]; GenSET data was from this study. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.4483313.v2
title: of Computational approach to predict species-specific type III secretion system (T3SS) effectors using single and multiple genomes

description: of Computational approach to predict species-specific type III secretion system (T3SS) effectors using single and multiple genomes
DOI: 10.6084/m9.figshare.4483370.v2
title: Additional file 6: of Computational approach to predict species-specific type III secretion system (T3SS) effectors using single and multiple genomes

description: Positive (effectors), negative (non-effectors), and testing sets of the five organisms that we used in the GenSET studies. (ALL Tags denotes all proteins encoded in the genome; Positive Set denotes known effector proteins used for training; Negative Set denotes non-effector proteins used for training; Testing Set denotes all proteins in the bacteria minus the Positive and Negative Sets; Positives in Testing Set denotes known effector proteins included in the Testing Set). (XLSX 48 kb)
DOI: 10.6084/m9.figshare.8342165.v2
title: of Coordination of reach-to-grasp in physical and haptic-free virtual environments

description: of Coordination of reach-to-grasp in physical and haptic-free virtual environments
DOI: 10.25386/genetics.10028399
title: Supplemental Material for Zhou et al., 2019

description: <b>F</b><b>igure S1. The shRNA construct targeting </b><b><i>Amh</i></b><b> and vector map. </b><b>Figure S2. Sex-diagnostic amplification in </b><b><i>Pelodiscus sinensis.</i></b><b>Figure S3. </b><b>Sequence and phylogenetic analyses of </b><b><i>P. sinensis Amh</i></b><b>.</b><b>Figure S4. Establishment of </b><b><i>Amh</i></b><b>-Knockdown and -overexpressing</b><b><i> </i></b><b>turtle model using lentivirus vectors</b>
DOI: 10.25386/genetics.10028399.v1
title: Supplemental Material for Zhou et al., 2019

description: <b>F</b><b>igure S1. The shRNA construct targeting </b><b><i>Amh</i></b><b> and vector map. </b><b>Figure S2. Sex-diagnostic amplification in </b><b><i>Pelodiscus sinensis.</i></b><b>Figure S3. </b><b>Sequence and phylogenetic analyses of </b><b><i>P. sinensis Amh</i></b><b>.</b><b>Figure S4. Establishment of </b><b><i>Amh</i></b><b>-Knockdown and -overexpressing</b><b><i> </i></b><b>turtle model using lentivirus vectors</b>
DOI: 10.25573/data.10046189
title: Dataset: Accretion rates of low intertidal salt marshes in the Pacific Northwest

description: Salt-marsh accretion rate was investigated at sites that spanned a gradient in relative rate of sea-level rise in Washington and Oregon. Mean accretion rate over all sites was 3.6 mm yr<sup>-1</sup> (95% CI = 2.4 to 4.8 mm yr<sup>-1</sup>), which exceeded present mean sea-level-rise rate (1.3 mm yr<sup>-1</sup>; sd = 0.6). However, a mean rise rate of 5.5 mm yr<sup>-1</sup> (sd = 1.9) predicted by a moderate sea-level-change scenario to occur by the year 2050 exceeds mean accretion rate. Marshes with adequate sediment input seemed to have the capacity to keep pace with an increased sea-level-rise rate. Lowest accretion rates were recorded at sites with the least sediment supply. Accretion rate showed a weak negative correlation with sediment organic matter (measured as volatile solids) and marsh standing stock. The data suggest that moderate and high rise-rate scenarios would threaten the existence of salt marshes in the region in the absence of increased sediment supply. A better understanding is required of marsh accretion and predicted rate of sea-level rise to refine predictions of the effects of sea-level rise on Pacific Northwest salt marshes.<br>
DOI: 10.6084/m9.figshare.3761562.v1273
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.10049072.v1
title: MOESM1 of Modelling of population structure through contemporary groups in genetic evaluation

description: Additional file 1 MS Excel workbook containing all data used in the analyses
DOI: 10.6084/m9.figshare.10049072
title: Additional file 1 of Modelling of population structure through contemporary groups in genetic evaluation

description: Additional file 1 MS Excel workbook containing all data used in the analyses
DOI: 10.6084/m9.figshare.10053365.v1
title: A new environment-aware scheduling method for remanufacturing system with non-dedicated reprocessing lines using improved flower pollination algorithm

description: This is the experimental data of the manuscript entitled “A new environment-aware scheduling method for remanufacturing system with non-dedicated reprocessing lines using improved flower pollination algorithm”. All data are generated through computer simulation and saved in the file with csv format. There are 12 instances for these experiments, which cover multiple scales. The datasets show the carbon emission signature, the weights for two objectives, the time to complete the corresponding operations in the corresponding workstations or reprocessing cells. The number of disassembly workstations, reassembly workstations, and reprocessing cells in each reprocessing line, the power consumptions of reassembly workstations and reprocessing cells in idle status and start-stop status, and the start-up time of reassembly workstations and reprocessing cells in each reprocessing line also shows in the datasets.