cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.3czby8
title: Occurrence Download

description: A dataset containing 126278 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hypericum tetrapterum",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 126278 records from 951 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006240-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hv2uxc
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pluteus variabilicolor",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006401-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ewqydg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pluteus variabilicolor",
 "Country is Slovenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006402-250914085247600/datasets/export for details.
DOI: 10.5517/ccdc.csd.cc2kff0g
title: CCDC 2366385: Experimental Crystal Structure Determination

description: Related Article: Bin Wu, Ming-Peng Zhuo, Ying-Li Shi, Lin-Feng Gu, Yu-Dong Zhao, Yang Su, Yuan-Yuan Li, Hang Lu, Wei-Feng Li, Zuo-Shan Wang, Xue-Dong Wang|2025|Chem (Cell Press)|11|102497|doi:10.1016/j.chempr.2025.102497
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kff1h
title: CCDC 2366386: Experimental Crystal Structure Determination

description: Related Article: Bin Wu, Ming-Peng Zhuo, Ying-Li Shi, Lin-Feng Gu, Yu-Dong Zhao, Yang Su, Yuan-Yuan Li, Hang Lu, Wei-Feng Li, Zuo-Shan Wang, Xue-Dong Wang|2025|Chem (Cell Press)|11|102497|doi:10.1016/j.chempr.2025.102497
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.6527b2
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rhabdalestes maunensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 135 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006406-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2lllph
title: CCDC 2401157: Experimental Crystal Structure Determination

description: Related Article: Irena Maliszewska, Anna Zdubek, Bażej Dziuk, Przemysaw Boratyński|2025|J.Nat.Prod.|88|1907|doi:10.1021/acs.jnatprod.5c00570
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.94sdaq
title: Occurrence Download

description: A dataset containing 4149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Year is 1944",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 4149 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006408-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2lygxy
title: CCDC 2411611: Experimental Crystal Structure Determination

description: Related Article: Jawher Makhlouf, Sabir Ali Siddique, Youness El Bakri, Arto Valkonen, Hatem A. Abuelizz, Rashad Al-Salahi, Wajda Smirani Sta|2025|Inorg.Chem.Commun.|181|115298|doi:10.1016/j.inoche.2025.115298
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m1jpx
title: CCDC 2414549: Experimental Crystal Structure Determination

description: Related Article: Ying-Ying Fei, Qiao Long, Yi-Xia Hou, Lin Chen, Shuai Huang, Xian-Li Zhou|2025|Fitoterapia|186|106770|doi:10.1016/j.fitote.2025.106770
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.cfunh7
title: Occurrence Download

description: A dataset containing 1470 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Vipera berus, Vipera aspis, Hierophis viridiflavus, Lacerta bilineata, Zootoca vivipara, Lacerta agilis, Coronella girondica, Zamenis scalaris, Anguis fragilis)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "Geometry POLYGON((4.331 43.435, 4.887 43.344, 4.877 43.364,\n 4.858 43.376, 4.851 43.385, 4.843 43.398, 4.825 43.411, 4.793 43.434,\n 4.766 43.46, 4.733 43.488, 4.697 43.518, 4.654 43.547, 4.606 43.578,\n 4.551 43.608, 4.498 43.633, 4.441 43.655, 4.382 43.67, 4.331 43.677,\n 4.331 43.435))",
 "CoordinateUncertaintyInMeters is greater than or equal to 0",
 "CoordinateUncertaintyInMeters is less than 5000"
 ]
}

 The dataset includes 1470 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006409-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hmg4z4
title: Occurrence Download

description: A dataset containing 747 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alouatta belzebul"
 ]
}

 The dataset includes 747 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006410-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yvm4kp
title: Occurrence Download

description: A dataset containing 1818198 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Data set: Only-presence data for wild ungulates and red fox in Spain based on hunting yields"
 ]
}

 The dataset includes 1818198 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006380-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wkgqg7
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melanotus flavolivens",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006413-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mxv68e
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liparis petraea Aver. & Averyanova"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011311-230530130749713/datasets/export for details.
DOI: 10.15468/dl.u4zbvt
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is China",
 "GadmGid is CHN.15_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Phragmites australis (Cav.) Trin. ex Steud.",
 "Year 2000-2022"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0135818-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x8rrby
title: Occurrence Download

description: A dataset containing 2442 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Epthianura crocea Castelnau & E.P.Ramsay, 1877)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2442 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0294678-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zhsuw
title: Occurrence Download

description: A dataset containing 2707 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-6410.0",
 "Month is one of (April, May, June, July)",
 "TaxonKey is Archilochus alexandri (Bourcier & Mulsant, 1846)",
 "Year 2011-2021"
 ]
}

 The dataset includes 2707 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0135835-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x5f6ta
title: Occurrence Download

description: A dataset containing 173 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Heliopais personatus (G.R.Gray, 1849), Heliopais personata (G.R.Gray, 1849))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 173 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0294710-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9xz6tx
title: Occurrence Download

description: A dataset containing 2707 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-6410.0",
 "Month is one of (April, May, June, July)",
 "TaxonKey is Archilochus alexandri (Bourcier & Mulsant, 1846)",
 "Year 2011-2021"
 ]
}

 The dataset includes 2707 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0135831-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gjyrfh
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liparis plantaginea Lindl."
 ]
}

 The dataset includes 18 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011319-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qb2nyp
title: Occurrence Download

description: A dataset containing 308155 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Saxicola torquatus (Linnaeus, 1766), Saxicola torquata (Linnaeus, 1766))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 308155 records from 815 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0294730-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aqjgt3
title: Occurrence Download

description: A dataset containing 271232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2022-10-07",
 "EventDate is less than or equal to 2022-11-06",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 271232 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0135804-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6hq5v6
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liparis ornithorrhynchos Ridl."
 ]
}

 The dataset includes 15 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011282-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5rr5jj
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei, Hong Kong)",
 "TaxonKey is Clossiana selenis (Eversmann, 1837)"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0135834-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3z7fwy
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liparis philippinensis (Ames) Schltr."
 ]
}

 The dataset includes 83 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011316-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u2stqr
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptoseris tubulifera Vaughan, 1907"
 ]
}

 The dataset includes 48 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0135845-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ayurba
title: Occurrence Download

description: A dataset containing 400 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptoseris yabei (Pillai & Scheer, 1976)"
 ]
}

 The dataset includes 400 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0135846-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r2d2ad
title: Occurrence Download

description: A dataset containing 5316 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Afrosoricida)",
 "HasCoordinate is true",
 "Geometry POLYGON((-180 -55.9147222222226,180 -55.9147222222226,180 83.6390830654569,-180 83.6390830654569,-180 -55.9147222222226))"
 ]
}

 The dataset includes 5316 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069121-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xkfgad
title: Occurrence Download

description: A dataset containing 695 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Letepsammia formosissima (Moseley, 1876)"
 ]
}

 The dataset includes 695 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0135850-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qea4uc
title: Occurrence Download

description: A dataset containing 21244 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Progne dominicensis (Gmelin, 1789))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 21244 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0294690-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dphujc
title: Occurrence Download

description: A dataset containing 1530 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chaetocercus bombus Gould, 1871)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1530 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0294700-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v4r6zq
title: Occurrence Download

description: A dataset containing 657 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acrida cinerea (Thunberg, 1815)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 657 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136072-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wjphn9
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Guatteria pachycarpa Erkens & N.Zamora"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0135838-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sgpvaz
title: Occurrence Download

description: A dataset containing 53594 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Orochelidon murina (Cassin, 1853))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 53594 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0294694-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15660361
title: Universal microbial network decomposes mammals despite varied climate, location, and seasonal influence

description: Microbial breakdown of organic material is one of the most important processes on earth, yet enormous knowledge gaps exist about its controls. We demonstrate that a universal, inter-kingdom microbial network assembles in response to nutrient-rich, terrestrial mammalian decomposition, despite selection effects of location, climate and season. We created the first metagenome-assembled genome library from mammalian decomposition-associated soils and combined it with metabolomics to identify a microbial decomposer network that interacts by cross-feeding to efficiently metabolize labile decomposition products. The key fungal and bacterial decomposers appear unique to the breakdown of terrestrial cadavers, and are rare in relative abundance across non-decomposition environments. Blow flies are suggested as an important decomposer vector and the observed lockstep of microbial interactions underlies a robust microbial forensic tool for predicting the time since death. 
description: This research was primarily funded by the National Institutes of Justice,  NIJ 2016-DN-BX-0194, 2015-DN-BX-K016. Additional information can be found at https://github.com/Metcalf-Lab/2016-2020-PMI-3-facility-multi-omics-study-Burcham-et-al.
description: Version 4 Files: 

DRAM_output.zip = DRAM output for MAGs as in Burcham et al. 2024

final_MAGs.zip = 257 MAGs used in Burcham et al. 2024

bin_taxonomy_277.xlsx = updated GTDB-tk (v2.4.0, r220) taxonomy of 277 MAG in Seitz et al. 2025 

277_MAGs.zip = individual .fa files for 277 MAGs as in Seitz et al. 2025

table_for_MRA_final_submit_RESUB_zenodo.xlsx = full table detailing MAG quality of all 277 MAGs