cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13279139
title: Additional file 1 of Immune challenge reduces gut microbial diversity and triggers fertility-dependent gene expression changes in a social insect

description: Additional file 1. Additional methodological details, Figures S1 and S2 and Table S2. Description of additional supplementary tables (Tables S1, S3-S18) are also provided.
DOI: 10.6084/m9.figshare.13279070
title: Additional file 1 of The effect of statin treatment on intratumoral cholesterol levels and LDL receptor expression: a window-of-opportunity breast cancer trial

description: Additional file 1: Table 1. Change in gene expression from baseline to time of surgery
DOI: 10.14284/433
title: 2015_HOMARUS - Acoustic telemetry data for European lobster (Homarus gammarus) in the southern North Sea (Belgium)

description: This is an acoustic telemetry dataset published by the Flanders Marine Institute (VLIZ). It contains animal (arthropod) tracking data collected by the Permanent Belgian Acoustic Receiver Network (https://lifewatch.be/en/fish-acoustic-receiver-network) for the project/study 2015_homarus, using VEMCO tags (V13) and receivers (VR2AR). Two individuals of European lobster (Homarus gammarus) were captured, tagged and released in April 2014 in the Belwind wind farm in the Belgian Part of the North Sea, to study the potential to tag and detect lobsters using an existing receiver setup. Tags were attached externally, using a cap which was attached to the base of the pincher claw with a tie-wrap.
description: This dataset was collected using infrastructure provided by VLIZ and INBO funded by the Research Foundation - Flanders (FWO) as part of the Belgian contribution to LifeWatch. Data were exported from the European Tracking Network data portal (http://www.lifewatch.be/etn) developed by VLIZ using the ETN R package (https://inbo.github.io/etn/) developed by INBO. Field definitions can be found at https://inbo.github.io/etn/articles/etn_fields.html.
DOI: 10.17632/cpzwk9m3s8.2
title: Reflected Foliar Spectra and local environmental conditions of Regenerating Plants in Neotropical Forest Gaps

description: The datasets here include data on average foliar spectra (Reflected wavelengths: 350-2500 nm) of gap regenerating species in Atlantic semi-deciduous forests sampled in the Southeast region of Brazil. The foliar spectra datasets include the data processed using splice correction and normalized by the first derivative. The other type of dataset includes the averaged local gap conditions for each species regarding soil and canopy parameters, as well as their average geographic coordinates and altitude of occurrence. Further details are provided in a descriptive text file that follows the datasets.
DOI: 10.17632/fxdg6j8chr.4
title: Data 1-Phylogenetic Signal for Foliar Spectra of Regenerating Plants in Neotropical Forest Gaps

description: This dataset allows to assess the full outcomes of the phylogenetic signal computed by K and Lambda metrics for the foliar spectral profile (wavelengths: 400-2450 nm) of regenerating plants in Neotropical Forest Gaps in the Southern region of Brazil.
DOI: 10.17632/mf6bmtpgdj.2
title: Data 2 - Local Phylogenetic Association of foliar spectra among Regenerating Plants in Neotropical Forest Gaps

description: This dataset allows to assess the full outcomes of LIPA (Local Indicator of Phylogenetic Association) computed for the foliar spectral profile (wavelengths: 400-2450 nm) among regenerating plants in Neotropical Forest Gaps in the Southern region of Brazil.
DOI: 10.17632/bcw4n67dcb.1
title: SG-Experiment_Other-pleasing_choice

description: A 'serious game' experiment was conducted on a group of graduate students to study the effect of a choice architecture on other-pleasing choice. Data for the control group (neutral treatment) is given on the first sheet, followed by the data for 'delight-seeking' and 'disappointment-averse' treatments in the next two sheets. Variables description is given on the last sheet of the workbook.
DOI: 10.6084/m9.figshare.13278924
title: Additional file 1 of Genome-wide association study of prevalent and persistent cervical high-risk human papillomavirus (HPV) infection

description: Additional file 1: Supplemental Table S1.
DOI: 10.6084/m9.figshare.13278896
title: Additional file 5 of Phenotypic characterization with somatic genome editing and gene transfer reveals the diverse oncogenicity of ependymoma fusion genes

description: Additional file 5: Table S4. List of antibodies
DOI: 10.6084/m9.figshare.13278893
title: Additional file 4 of Phenotypic characterization with somatic genome editing and gene transfer reveals the diverse oncogenicity of ependymoma fusion genes

description: Additional file 4: Table S3. List of primers
DOI: 10.6084/m9.figshare.13278890
title: Additional file 3 of Phenotypic characterization with somatic genome editing and gene transfer reveals the diverse oncogenicity of ependymoma fusion genes

description: Additional file 3: Table S2. List of sgRNA target sequence
DOI: 10.6084/m9.figshare.13278887
title: Additional file 2 of Phenotypic characterization with somatic genome editing and gene transfer reveals the diverse oncogenicity of ependymoma fusion genes

description: Additional file 2: Table S1. List of vector constructs
DOI: 10.6084/m9.figshare.13278876
title: Additional file 1 of Chebulinic acid is a safe and effective antiangiogenic agent in collagen-induced arthritis in mice

description: Additional file 1.
DOI: 10.17632/9vnkwkk7ky.1
title: Weapon toys effect

description: Raw data-sets and analyses about the effects of weapon toy exposure on aggressive cognition and behavior
DOI: 10.6084/m9.figshare.13278866
title: Additional file 1 of Genotype imputation and variability in polygenic risk score estimation

description: Additional file 1: Supplementary Tables S1-S5. Components of PRSCAD (Table S1). Correlation of imputed-based PRSs and WGS-based ground truth (Table S2). The distribution of risk score percentile rank changes caused by three different imputation processes for other diseases (Table S3). The rate of re-classification due to imputation variability at different quintile-based risk tiers (Table S4). The rate of re-classification due to imputation variability for high-risk tiers (Table S5).
DOI: 10.17632/cc3prys8xc.1
title: Interrupted Reach

description: Microelectrode recordings from human subthalamic nucleus in awake subjects performing the interrupted reach tasl.
DOI: 10.6084/m9.figshare.13278852
title: Additional file 4 of Commercial head-mounted display virtual reality for upper extremity rehabilitation in chronic stroke: a single-case design study

description: Additional file 4. This excel file contains all data which was generated with or analyzed in this study. It is divided into 3 tabs: Primary outcomes, Additional assessments, and Training sessions.
DOI: 10.17632/vyzccs8tsh.1
title: ChIP-Seq for dRETL1 testes rescued with dRTEL1-GFP

description: Newly eclosed Drosophila males with dRTEL1-GFP expression were selected and aged for 3 days at 25°C. 800 pairs of testes were collected for each ChIP-seq reaction as one replicate. Two replicates were generated for control or experiment group. The whole ChIP process was conducted at 4°C or on ice. ChIP-IT high sensitivity kit (Active motif) was used to perform the ChIP experiments according to the manufacturer's instruction. The chromatin was immune-precipitated by a ChIP-grade GFP antibody (ab290, Abcam). Sonication was conducted on Bioruptor sonicator (diagenode) for 30 second on-off pulse, 30 cycles at 4°C. The fragment size of sonicated chromatin was confirmed between 200bp to 500bp. Illumina TruSeq ChIP Sample Preparation Kit (IP-202-1012) was used to generate the ChIP-seq libraries following the manufacturer's instruction. The Illumina compatible libraries were sequenced with Mi-seq desktop sequencer (Mi-Seq, Illumina) by BGI, China. 75 bp single-end read sequencing was accomplished. Sequencing reads were mapped to Drosophila genome (dm6, FlyBase 6.05).
DOI: 10.6084/m9.figshare.13278849
title: Additional file 3 of Commercial head-mounted display virtual reality for upper extremity rehabilitation in chronic stroke: a single-case design study

description: Additional file 3. The excel file with primary outcomes which was imported to R for the Tau-U analysis.
DOI: 10.17632/vf463my44k.1
title: Edible coating in walnuts

description: Data related with elaboration of edible coatings applied in walnuts and the measurements of acid value, perixide value, and thiobarbituric acid reactive substances (TBARS).
DOI: 10.6084/m9.figshare.13278843
title: Additional file 2 of Commercial head-mounted display virtual reality for upper extremity rehabilitation in chronic stroke: a single-case design study

description: Additional file 2. The R script which was used to calculate the Tau-UA vs. B − trend A summary index for the primary outcomes.
DOI: 10.17632/fss5xfh4my.2
title: Data for: Response of reptiles to weed-control and native plant restoration in an arid, grass-invaded landscape

description: Ground cover, detailed plant data and reptile captures at sites invaded with buffel grass (Cenchrus ciliaris) and sites treated to remove buffel grass in central Australia, monitored over 5 years. Times: 1=Nov2007, 2=Feb2008, 3=Jan2009, 4=Feb2010, 5=Nov2010, 6=Oct2011, 7 = Nov2012 Locations: DP = Alice Springs Desert Park, SG = Simpsons Gap Treatments: Buffel = Invaded, no treatment, No buffel = Invaded, weed treatment applied No buffel Treatment: Times 1,2 = Pre-herbicide treatment, Times 3,4,5,6,7 = Post-herbicide treatment
DOI: 10.17632/tpw4c3g9m3.2
title: Area postrema cell types that mediate nausea-associated behaviors
DOI: 10.17632/8zw2r3npp7.1
title: Data for: Dalbavancin is a promising anti-COVID-19 candidate

description: The sourse data of the paper: Dalbavancin is a promising anti-COVID-19 candidate
DOI: 10.17632/823rbf94mw.1
title: World Places

description: Images of the following places: Badlands National Park Kistefos Museum Maldives beaches
DOI: 10.17632/7mgtzphnd2.1
title: Data on man-made sinkholes due to leakage in underground pipelines in different subsurface soil profiles

description: Jae-ho Choia* (jaehochoi@dau.ac.kr) Abstract A sinkhole is a ground surface depression that may occur with or without any indications on the surface and often pose danger to both properties and people. Leakage from underground pipe mains in urban areas may cause sudden ground subsidence or sinkholes. For a long time, researchers have been working on hazard and risk assessment of sinkhole formation, especially natural sinkholes. However, much less work has been done on risk prediction and the mechanism of manmade sinkholes. In this study, different versions of small-scale sinkhole physical models were used in experiments to monitor ground settlement or collapse due to leakage from an underground pipeline. The factors under consideration were the type of subsurface soil profile, type of water flow, and leakage position in the pipeline. The ultimate goal was to use this information to predict the risk of sinkhole occurrence due to leakage from sewer or water pipelines under different subsurface soil conditions. The experimental results and statistical analysis showed that the subsurface soil strata conditions dominated the mechanism of sinkhole occurrence, although other factors also have contributed to the settlement. This analysis was then used to predict the sinkhole risk level under different conditions. The development of a reliable sinkhole risk prediction system can potentially minimize the risk to human lives and infrastructure. These findings can be applied to the development of a sinkhole risk index (SRI) that considers various other factors influencing sinkhole occurrence.
DOI: 10.17632/wn5n8rxryx.1
title: Covid-19_Data_Malaysia

description: The dataset contains the new covid-19 cases, deaths, recoveries, and active cases recorded in Malaysia from 25 February 2020 to 22 November 2020. There are eight columns, the date, daily confirmed cases, cumulative confirm cases, daily recoveries, cumulative recoveries, daily death cases, cumulative death cases, and cumulative active cases. The data was obtained from the ministry of health Malaysia site: http://www.moh.gov.my/index.php/pages/view/2019-ncov-wuhan, Malaysiakini covid-19 tracker: https://newslab.malaysiakini.com/covid-19/en, and Johns Hopkins University site: https://data.humdata.org/dataset/novel-coronavirus-2019-ncov-cases and organized in a CSV format.
DOI: 10.6084/m9.figshare.13278776
title: Additional file 1 of The evolution of relapse of adult T cell acute lymphoblastic leukemia

description: Additional file 1. Additional tables. This file contains the supplementary tables referenced in the main text. Table S1 contains clinical information on the adult T-ALL cohort. Table S2 contains clinical information of the public pediatric cohorts. Table S3 contains the detected cancer genes by IntOGen. Table S4 contains the lists of ALL cancer genes of interest found in the literature separated in 3 subtables according to the type of alterations: SNVs and InDels (Table S4.a), CNV (Table S4.b), SV (Table S4.c). Table S5 contains the mutations (SNVs and InDels) that we consider as candidate drivers. Table S6 has the candidate driver CNVs (Table S6.a) and SVs (Table S6.b) of the cohorts analyzed. Table S7 has the time of divergence estimates between primary and relapse estimated as days pre-diagnosis of each patient.
DOI: 10.6084/m9.figshare.13278756
title: Additional file 9 of jouvence, a new human snoRNA involved in the control of cell proliferation

description: Additional file 9: Table S8. jou-overexpression: genes Down versus siRNA: genes Up (868 genes).
DOI: 10.17632/4rsz3snvk5.2
title: Dataset of NGS-Phage display library of nanobodies derived from Indian desert camel (Camelus dromedarius L.)

description: We constructed a phage display library (PDL) of nanobodies (Nbs) derived from an E. coli lipopolysaccharide-immunized Indian desert camel and subjected it to NGS methodology to obtain the NGS reads dataset of Nbs in a fraction of that PDL. This is the first phage display library of Nbs derived from the Indian desert camel and its initial preliminary characterization revealed functional Nbs against diverse Ags from infectious agents. Several Nb clones were isolated by panning against E. coli endotoxin and S. aureus β-hemolysin (an exotoxin), and were deposited, along with the library, in ICAR-Veterinary Type Culture Collection at Hisar (Haryana) (Accession no. VTCCMBA22 to VTCCMBA48). Some of these Nb clones were characterized for biochemical and functional features, and Sanger sequenced (GenBank accession no.: EU861212; KF990215; KF990216; KF990217; GU014816). For NGS, the cryo-preserved transformants library was revived to extract the Nb-encoding VHH (inserts)-pHEN4 (vector) DNA pool. The DNA sample was used for amplifying VHH pool by PCR. The VHH amplicons band was gel-purified and subjected to NGS using Illumina MiSeqTM platform. ‘Nextra XT micro V2 Index’ kit was used for the Nb library DNA sample sequencing, with the adaptors: ‘i7’ (N706: TAGGCATG) and ‘i5’ (S517: GCGTAAGA). The raw data of NGS reads was submitted to NCBI ‘Sequence Reads Archive’ repository. Raw NGS data ‘Read 1’ [Phage lib NGS seqs-ABT-28_S24_L001_R1_001.fastq (1)] and ‘Read 2’ [Phage lib NGS seqs-ABT-28_S24_L001_R2_001.fastq (2)] files were generated by Illumina® MiSeq™ system. Preliminary examination using CLC Genomics Workbench 12.0 revealed 91,073 sequence reads in each file. Quality score ‘Q30’ (1 in 1000 bases incorrect) at 2x150 bp was &gt;80%, i.e., acceptable. A total read count was 182146 (matched= 179591; unmatched=2555), with average read length of 130.33 bases and a total of 23.74 Mb. Of 179591 matched reads, 142004 were paired reads and 37587 broken paired reads. These data can be accessed at SRA RunSelector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA516512 Table 3 shows contig 1 and 2 having CDR1, -2 and -3, whereas contig 3 being of shorter length, having only CDR 1 and -2. In addition, the table 3 shows that the contig 2 CDR 1 and -2 are identical to the LPS-binder clones previously isolated from the library and sequenced by Sanger’s automated technique. CDR3 sequence has only one amino acid position mismatch with four LPS-binders and two amino acid positions with one LPS-binder clone. One randomly picked and Sanger sequenced clone (EU429319) from the library showed CDR 1 and -3 similar to the LPS-binder clones, but CDR2 was entirely different. The table 3 also shows that VHH hallmark amino acids are present in all the contigs as well as individually isolated clones from the library. KF990217.1 (Anti-lps Nb Cl26) nucleotide sequences BLASTn search revealed highly similar sequences in the SRA_SRX5282797 database (this library NGS database).
DOI: 10.6084/m9.figshare.13278753
title: Additional file 8 of jouvence, a new human snoRNA involved in the control of cell proliferation

description: Additional file 8: Table S7. jou-overexpression: genes Up versus siRNA: genes down (1102 genes).
DOI: 10.6084/m9.figshare.13278750
title: Additional file 7 of jouvence, a new human snoRNA involved in the control of cell proliferation

description: Additional file 7: Table S6. HCT-siRNA knockdown_KEGG enrichment pathways.
DOI: 10.6084/m9.figshare.13278747
title: Additional file 6 of jouvence, a new human snoRNA involved in the control of cell proliferation

description: Additional file 6: Table S5. HCT-siRNA knockdown_DEG downregulated genes.
DOI: 10.6084/m9.figshare.13278744
title: Additional file 5 of jouvence, a new human snoRNA involved in the control of cell proliferation

description: Additional file 5: Table S4. HCT-siRNA knockdown_DEG upregulated genes.
DOI: 10.6084/m9.figshare.13278741
title: Additional file 4 of jouvence, a new human snoRNA involved in the control of cell proliferation

description: Additional file 4: Table S3. HCT-jou-overexpression_KEGG enrichment pathways.
DOI: 10.6084/m9.figshare.13278738
title: Additional file 3 of jouvence, a new human snoRNA involved in the control of cell proliferation

description: Additional file 3: Table S2. HCT-jou-overexpression_DEG downregulated genes.
DOI: 10.6084/m9.figshare.13278735
title: Additional file 2 of jouvence, a new human snoRNA involved in the control of cell proliferation

description: Additional file 2: Table S1. HCT-jou-overexpression_DEG upregulated genes.
DOI: 10.6084/m9.figshare.13278728
title: Additional file 1 of Effect of sterilization on the canine vaginal microbiota: a pilot study

description: Additional file 1.
DOI: 10.6084/m9.figshare.13278674
title: Additional file 13 of Perinatal environment shapes microbiota colonization and infant growth: impact on host response and intestinal function

description: Additional file 13. R code used in the study and links of consulted GitHub repositories (R 5 kb)
DOI: 10.6084/m9.figshare.13278672
title: Additional file 3 of A cassava protoplast system for screening genes associated with the response to South African cassava mosaic virus

description: Additional file 3: E3 ligase and E3 ligase complex-associated gene expression during plant virus infection.
DOI: 10.6084/m9.figshare.13278669
title: Additional file 2 of A cassava protoplast system for screening genes associated with the response to South African cassava mosaic virus

description: Additional file 2: ANOVA and Tukey's HSD analyses of qPCR data.
DOI: 10.6084/m9.figshare.13278668
title: Additional file 11 of Perinatal environment shapes microbiota colonization and infant growth: impact on host response and intestinal function

description: Additional file 11. Amplicon sequence variant (ASV) table.
DOI: 10.5281/zenodo.4244277
title: Digitalisierung bautechnischer Ausstellungsexponate für die Lehre und Ausbildung

description: In der folgenden Veröffentlichung werden die Idee, das Verfahren und die Anwendung zur Digitalisierung von Ausstellungsexponaten für den Lehrbetrieb einer Hochschule beschrieben und diskutiert. Die Erläuterung von technischen Zusammenhängen und Details an einem Exponat oder einem Muster sind gängige Praxis in der Lehre und der Ausbildung. Moderne Darstellungsmethoden erlauben es diese Form der Darstellung und Erläuterung durch digitale Methoden zu ergänzen oder zu ersetzen. Die Möglichkeiten für eine Digitalisierung sind dabei sehr unterschiedlich und ebenfalls abhängig von der Expertise der Anwender bzw. Anwendenden. Dieser Beitrag befasst sich mit der Digitalisierung von rund 26 Exponaten des Holzbaus in photogrammetrische Modelle und dessen Veröffentlichung für die Lehre. Die Veröffentlichung der anwendungsfertigen digitalen Modelle erfolgt über die Internetseite der Jade Hochschule. Darüber hinaus werden die Ergebnisse und ein Teil der Rohdaten ebenfalls auf der Open Science Plattform zenodo.org veröffentlicht.
description: Der nachfolgende Datensatz beinhaltet 3D Modelle der Holzbauausstellung der Jade Hochschule in Oldenburg. Die Sammlung beinhaltet 26 Modelle und wird in den kommenden Semestern weiter vervollständigt. Die 3D Modelle lassen sich mit einem PDF Reader öffnen. Falls Ihnen der Inhalt als nicht vertrauenswürdig angezeigt wird, sollten Sie in ihrem PDF-Reader unter Einstellungen die 3D Inhalte zulassen bzw. aktivieren. Hier finden Sie eine Veröffentlichung zu Anlass und Entstehung dieser digitalen Holzbausammlung.
DOI: 10.5281/zenodo.4244276
title: Digitalisierung bautechnischer Ausstellungsexponate für die Lehre und Ausbildung

description: In der folgenden Veröffentlichung werden die Idee, das Verfahren und die Anwendung zur Digitalisierung von Ausstellungsexponaten für den Lehrbetrieb einer Hochschule beschrieben und diskutiert. Die Erläuterung von technischen Zusammenhängen und Details an einem Exponat oder einem Muster sind gängige Praxis in der Lehre und der Ausbildung. Moderne Darstellungsmethoden erlauben es diese Form der Darstellung und Erläuterung durch digitale Methoden zu ergänzen oder zu ersetzen. Die Möglichkeiten für eine Digitalisierung sind dabei sehr unterschiedlich und ebenfalls abhängig von der Expertise der Anwender bzw. Anwendenden. Dieser Beitrag befasst sich mit der Digitalisierung von rund 26 Exponaten des Holzbaus in photogrammetrische Modelle und dessen Veröffentlichung für die Lehre. Die Veröffentlichung der anwendungsfertigen digitalen Modelle erfolgt über die Internetseite der Jade Hochschule. Darüber hinaus werden die Ergebnisse und ein Teil der Rohdaten ebenfalls auf der Open Science Plattform zenodo.org veröffentlicht.
description: Der nachfolgende Datensatz beinhaltet 3D Modelle der Holzbauausstellung der Jade Hochschule in Oldenburg. Die Sammlung beinhaltet 26 Modelle und wird in den kommenden Semestern weiter vervollständigt. Die 3D Modelle lassen sich mit einem PDF Reader öffnen. Falls Ihnen der Inhalt als nicht vertrauenswürdig angezeigt wird, sollten Sie in ihrem PDF-Reader unter Einstellungen die 3D Inhalte zulassen bzw. aktivieren. Hier finden Sie eine Veröffentlichung zu Anlass und Entstehung dieser digitalen Holzbausammlung.
DOI: 10.34777/njmc-9v31
title: MOBIO

description: MOBIO is a dataset for mobile face and speaker recognition. The dataset consists of bi-modal (audio and video) data taken from 152 people. The dataset has a female-male ratio of nearly 1:2 (100 males and 52 females) and was collected from August 2008 until July 2010 in six different sites from five different countries. This led to a diverse bi-modal dataset with both native and non-native English speakers.
DOI: 10.6084/m9.figshare.13278624
title: Additional file 6 of Genome-scale CRISPR screening at high sensitivity with an empirically designed sgRNA library

description: Additional file 6: Table S2. sgRNA sequences used in this study.
DOI: 10.6084/m9.figshare.13278618
title: Additional file 4 of Genome-scale CRISPR screening at high sensitivity with an empirically designed sgRNA library

description: Additional file 4: File S2. sgRNA sequences of the HD CRISPR Library B
DOI: 10.6084/m9.figshare.13278615
title: Additional file 3 of Genome-scale CRISPR screening at high sensitivity with an empirically designed sgRNA library

description: Additional file 3: File S1. sgRNA sequences of the HD CRISPR Library A.