cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.3gc8xu
title: Occurrence Download

description: A dataset containing 81629 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coenonympha tullia Müller, 1764"
 ]
}

 The dataset includes 81629 records from 225 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136374-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id222510.1
title: StrainInfo SI-ID 222510.1

description: StrainInfo dataset 222510 about a strain of Clonostachys rosea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222661.1
title: StrainInfo SI-ID 222661.1

description: StrainInfo dataset 222661 about a strain of Ensifer meliloti. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222511.1
title: StrainInfo SI-ID 222511.1

description: StrainInfo dataset 222511 about a strain of Pseudocosmospora vilior. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222512.1
title: StrainInfo SI-ID 222512.1

description: StrainInfo dataset 222512 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222587.1
title: StrainInfo SI-ID 222587.1

description: StrainInfo dataset 222587 about a strain of Azospirillum lipoferum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222588.1
title: StrainInfo SI-ID 222588.1

description: StrainInfo dataset 222588 about a strain of Lactiplantibacillus plantarum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222589.1
title: StrainInfo SI-ID 222589.1

description: StrainInfo dataset 222589 about a strain of Clavibacter nebraskensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222590.1
title: StrainInfo SI-ID 222590.1

description: StrainInfo dataset 222590 about a strain of Curtobacterium flaccumfaciens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222662.1
title: StrainInfo SI-ID 222662.1

description: StrainInfo dataset 222662 about a strain of Ensifer meliloti. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222663.1
title: StrainInfo SI-ID 222663.1

description: StrainInfo dataset 222663 about a strain of Dickeya chrysanthemi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222664.1
title: StrainInfo SI-ID 222664.1

description: StrainInfo dataset 222664 about a strain of Dickeya chrysanthemi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222513.1
title: StrainInfo SI-ID 222513.1

description: StrainInfo dataset 222513 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222514.1
title: StrainInfo SI-ID 222514.1

description: StrainInfo dataset 222514 about a strain of Fusarium subglutinans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222515.1
title: StrainInfo SI-ID 222515.1

description: StrainInfo dataset 222515 about a strain of Cylindrocarpon. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222516.1
title: StrainInfo SI-ID 222516.1

description: StrainInfo dataset 222516 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222591.1
title: StrainInfo SI-ID 222591.1

description: StrainInfo dataset 222591 about a strain of Curtobacterium flaccumfaciens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222592.1
title: StrainInfo SI-ID 222592.1

description: StrainInfo dataset 222592 about a strain of Mesorhizobium loti. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222593.1
title: StrainInfo SI-ID 222593.1

description: StrainInfo dataset 222593 about a strain of Rhizobium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222594.1
title: StrainInfo SI-ID 222594.1

description: StrainInfo dataset 222594 about a strain of Pseudomonas savastanoi pv. glycinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222665.1
title: StrainInfo SI-ID 222665.1

description: StrainInfo dataset 222665 about a strain of Dickeya chrysanthemi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222666.1
title: StrainInfo SI-ID 222666.1

description: StrainInfo dataset 222666 about a strain of Dickeya chrysanthemi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222667.1
title: StrainInfo SI-ID 222667.1

description: StrainInfo dataset 222667 about a strain of Dickeya chrysanthemi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222668.1
title: StrainInfo SI-ID 222668.1

description: StrainInfo dataset 222668 about a strain of Dickeya chrysanthemi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222517.1
title: StrainInfo SI-ID 222517.1

description: StrainInfo dataset 222517 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222669.1
title: StrainInfo SI-ID 222669.1

description: StrainInfo dataset 222669 about a strain of Dickeya chrysanthemi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222518.1
title: StrainInfo SI-ID 222518.1

description: StrainInfo dataset 222518 about a strain of Hydropisphaera suffulta. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222519.1
title: StrainInfo SI-ID 222519.1

description: StrainInfo dataset 222519 about a strain of Hydropisphaera suffulta. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.uh3sh5
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Encope grandis L.Agassiz, 1841"
 ]
}

 The dataset includes 53 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008604-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3hdzvt
title: Occurrence Download

description: A dataset containing 16344 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leiopicus medius (Linnaeus, 1758)",
 "Geometry POLYGON((-31 35, 50 35, 50 72, -31 72, -31 35))"
 ]
}

 The dataset includes 16344 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007923-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/11499591
title: Public Opinion on Climate Change (Updated Daily)
DOI: 10.5281/zenodo.15531308
title: Cochlear_Registration_Activation_Maps_nnunet_stsv
DOI: 10.5281/zenodo.15531309
title: Cochlear_Registration_Activation_Maps_nnunet_stsv
DOI: 10.15468/dl.utjfk9
title: Occurrence Download

description: A dataset containing 1085 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dryobates pernyii)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 1085 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092621-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4m7t45
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Persicaria barbata",
 "Country is Indonesia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 31 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092622-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vt2232
title: Occurrence Download

description: A dataset containing 96108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Polistes dominula"
 ]
}

 The dataset includes 96108 records from 407 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092534-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.67y9sg
title: Occurrence Download

description: A dataset containing 1242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lemna turionifera",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1242 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092623-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bu9zh4
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aequidens gerciliae)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 30 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092624-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29814947
title: Datasets associated with the manuscript entitled "Phylogenetic placement and contamination screening of Amoebozoa genomic data from the Protist 10,000 Genomes (P10K) Database"

description: <b>Background: </b>Genomic data are essential for uncovering the evolutionary history, ecological roles, and diversity of life. Yet, microbial eukaryotes like Amoebozoa, an ancient and morphologically diverse lineage, remain critically underrepresented in genomic repositories. This has limited our ability to address fundamental questions in eukaryotic evolution. The Protist 10,000 Genomes (P10K) initiative seeks to fill this gap by generating and compiling genome- and transcriptome-level data for a wide range of microbial eukaryotes. To ensure the reliability of these resources, accurate taxonomic identification and contamination screening are vital. In this study, we aimed to assess the taxonomic consistency and integrity of the P10K database with a phylogenetic-based approach using Amoebozoa as a case study.<b>Results:</b> Through SSU rDNA/rRNA and COI phylogenetic reconstructions this study confirmed several initial taxonomic identifications provided in the P10K database, resolved ambiguities at higher taxonomic levels, and corrected misassignments among morphologically similar but phylogenetically distant taxa. Moreover, the contamination screening using SSU rDNA/rRNA revealed several amoebozoan data that are contaminated by sequence from other eukaryotic taxa, representing contaminated genomic assemblies.<b>Conclusion:</b> Phylogenetic placement coupled with contamination screening enabled us to distinguish the higher-quality Amoebozoa datasets currently available in the P10K database from those requiring decontamination or additional sequencing before downstream use. These findings serve as a reference for the future use of these data and as a guide for further sequencing efforts aimed at expanding the taxonomic diversity of Amoebozoa represented at the genomic level. By applying a phylogenetic survey to the Amoebozoa data, we present a framework that can be extended to other microbial eukaryote lineages. Addressing imprecise taxonomic identifications and contamination in certain P10K datasets, as well as data reproducibility, will further enhance the value of this unprecedented genomic resource for protists, with significant potential to illuminate the evolution and diversification of eukaryotic life.
DOI: 10.6084/m9.figshare.29814947.v1
title: Datasets associated with the manuscript entitled "Phylogenetic placement and contamination screening of Amoebozoa genomic data from the Protist 10,000 Genomes (P10K) Database"

description: <b>Background: </b>Genomic data are essential for uncovering the evolutionary history, ecological roles, and diversity of life. Yet, microbial eukaryotes like Amoebozoa, an ancient and morphologically diverse lineage, remain critically underrepresented in genomic repositories. This has limited our ability to address fundamental questions in eukaryotic evolution. The Protist 10,000 Genomes (P10K) initiative seeks to fill this gap by generating and compiling genome- and transcriptome-level data for a wide range of microbial eukaryotes. To ensure the reliability of these resources, accurate taxonomic identification and contamination screening are vital. In this study, we aimed to assess the taxonomic consistency and integrity of the P10K database with a phylogenetic-based approach using Amoebozoa as a case study.<b>Results:</b> Through SSU rDNA/rRNA and COI phylogenetic reconstructions this study confirmed several initial taxonomic identifications provided in the P10K database, resolved ambiguities at higher taxonomic levels, and corrected misassignments among morphologically similar but phylogenetically distant taxa. Moreover, the contamination screening using SSU rDNA/rRNA revealed several amoebozoan data that are contaminated by sequence from other eukaryotic taxa, representing contaminated genomic assemblies.<b>Conclusion:</b> Phylogenetic placement coupled with contamination screening enabled us to distinguish the higher-quality Amoebozoa datasets currently available in the P10K database from those requiring decontamination or additional sequencing before downstream use. These findings serve as a reference for the future use of these data and as a guide for further sequencing efforts aimed at expanding the taxonomic diversity of Amoebozoa represented at the genomic level. By applying a phylogenetic survey to the Amoebozoa data, we present a framework that can be extended to other microbial eukaryote lineages. Addressing imprecise taxonomic identifications and contamination in certain P10K datasets, as well as data reproducibility, will further enhance the value of this unprecedented genomic resource for protists, with significant potential to illuminate the evolution and diversification of eukaryotic life.
DOI: 10.15468/dl.jfe4sk
title: Occurrence Download

description: A dataset containing 16511280 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dryobates pubescens)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 16511280 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092594-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9e45ks
title: Occurrence Download

description: A dataset containing 1862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lemna turionifera",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1862 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092625-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x2gvhk
title: Occurrence Download

description: A dataset containing 962 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aves)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-75.9659351901291 5.42706433566854,-75.9345810007134 5.42706433566854,-75.9345810007134 5.46762915601537,-75.9659351901291 5.46762915601537,-75.9659351901291 5.42706433566854))"
 ]
}

 The dataset includes 962 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092626-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c2nbey
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alternanthera sessilis",
 "Country is Ghana",
 "HasCoordinate is true"
 ]
}

 The dataset includes 43 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092628-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d9ke86
title: Occurrence Download

description: A dataset containing 3134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dryocopus hodgei)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 3134 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092630-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7g6phd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Spectrolebias gracilis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092632-250717081556266/datasets/export for details.
DOI: 10.15468/dl.f2saf4
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia confusa",
 "Country is Indonesia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092631-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.btvz7e
title: Occurrence Download

description: A dataset containing 37050 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lythrum salicaria",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 37050 records from 155 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092629-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.