cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.3ejnkr
title: Occurrence Download

description: A dataset containing 181 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nocomis leptocephalus bellicus"
 ]
}

 The dataset includes 181 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022601-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fm9p3h
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dianthera americana"
 ]
}

 The dataset includes 99 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022600-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.927kc8
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba franktonii"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022602-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kk4qms
title: Occurrence Download

description: A dataset containing 5985 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phasianus colchicus",
 "Country is Bulgaria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5985 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022603-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8jmeb9
title: Occurrence Download

description: A dataset containing 24487 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Canis lupus",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 24487 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022604-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12479689
title: Integrated IDPS Security 3Datasets (IIS3D)
DOI: 10.15468/dl.5mmu9z
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Yinshania henryi"
 ]
}

 The dataset includes 64 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022606-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29580920.v1
title: <b>Data for Oil price uncertainty and renewable energy consumption in ASEAN-8: evidence from Bayesian modelling</b>

description: <b>Data for Oil price uncertainty and renewable energy consumption in ASEAN-8: evidence from Bayesian modelling</b>
DOI: 10.6084/m9.figshare.29580920
title: <b>Data for Oil price uncertainty and renewable energy consumption in ASEAN-8: evidence from Bayesian modelling</b>

description: <b>Data for Oil price uncertainty and renewable energy consumption in ASEAN-8: evidence from Bayesian modelling</b>
DOI: 10.15468/dl.6dmq8e
title: Occurrence Download

description: A dataset containing 22144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Blysmus compressus, Aplostemon compressus, Blysmopsis compressus, Blysmus compressus, Chaetospora compressa, Cyperus compressus, Heleogiton compressa, Nemochloa compressa, Nomochloa compressa, Schoenus compressus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 22144 records from 252 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022605-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qurdw8
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidium echinatum"
 ]
}

 The dataset includes 152 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022607-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eaju56
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nocomis bellicus"
 ]
}

 The dataset includes 131 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022608-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s9he4w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is ",
 "Geometry POLYGON ((-12.89 46, 0 46, 0 53, -12.89 53, -12.89 46))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022610-250711103210423/datasets/export for details.
DOI: 10.34740/kaggle/dsv/12485075
title: OBELiX
DOI: 10.15468/dl.frgtda
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Odontarrhena pinifolia"
 ]
}

 The dataset includes 31 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022612-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21947/2571988
title: Site B - NREL ASSIST (SN11) Thermodynamic Retrievals TROPoe / Derived Data

description: This dataset contains daily files with thermodynamic profiles retrieved with the optimal estimation physical retrieval TROPoe v0.12 (Turner and Löhnert 2014; Turner and Blumberg 2019; Turner and Löhnert 2021). The profiles are retrieved every 10 minutes from instantaneous observations from the NREL ASSIST-II (SN 11) infrared spectrometer. Observations are noise-filtered but not averaged in time to minimize errors due to non-uniform clouds.

Additional input data in TROPoe are cloud base height (CBH), which is a combined data product that uses data from ceilometers at sites A1 and H and scanning lidars from ARM sites C1 and E37. The CBH is weighted inversely proportionally to the distance to the respective site to take into account the spatial variability of clouds (see https://github.com/StefanoWind/ASSIST_analysis/blob/main/awaken_processing/combine_cbh.py). The full pipeline for running the retrieval is available at https://github.com/StefanoWind/TROPoe_processor. Met data was not ingested.

In addition to these temporally resolved input data, TROPoe requires an a priori dataset (prior) that provides mean climatological estimates of thermodynamic profiles and specifies how temperature and humidity covary with height as an input (for details see, e.g., Djalalova et al. 2022). The prior is a key component of the retrieval and provides a constraint on the ill-posed inversion problem. A monthly prior was computed from operational radiosonde launches at ARM SGP, OK.
DOI: 10.5281/zenodo.15255129
title: In situ sampling uncovers seasonal variability in community structure and metabolism of active deep-sea microbes

description: This dataset was utilized in the research project titled “In situ sampling uncovers seasonal variability in community structure and metabolism of active deep-sea microbes.”

Version 1 includes Metagenome-Assembled Genomes (MAGs). Files ending with .faa contain the amino acid sequences for each MAG, while files ending with .txt provide annotation information for each MAG based on alignment with the KEGG database.

Version 2 contains two files: Greening_lab_metabolic_marker_gene_databases.zip and Greendatabase_annotation_table.txt.





Greening_lab_metabolic_marker_gene_databases.zip:This file contains the protein sequences used to build a custom database of metabolic marker proteins based on the Greening Lab collection (https://doi.org/10.26180/c.5230745). In addition to the Greening Lab database, we supplemented it with amoB and pmoB sequences retrieved from NCBI and UniProt to expand the coverage of key functional markers in our analysis.




Greendatabase_annotation_table.txt:This file contains the annotation information for each MAG based on alignment with the custom Greening Lab metabolic marker gene database described above.
DOI: 10.5281/zenodo.15919177
title: In situ sampling uncovers seasonal variability in community structure and metabolism of active deep-sea microbes

description: This dataset was utilized in the research project titled “In situ sampling uncovers seasonal variability in community structure and metabolism of active deep-sea microbes.”

Version 1 includes Metagenome-Assembled Genomes (MAGs). Files ending with .faa contain the amino acid sequences for each MAG, while files ending with .txt provide annotation information for each MAG based on alignment with the KEGG database.

Version 2 contains two files: Greening_lab_metabolic_marker_gene_databases.zip and Greendatabase_annotation_table.txt.





Greening_lab_metabolic_marker_gene_databases.zip:This file contains the protein sequences used to build a custom database of metabolic marker proteins based on the Greening Lab collection (https://doi.org/10.26180/c.5230745). In addition to the Greening Lab database, we supplemented it with amoB and pmoB sequences retrieved from NCBI and UniProt to expand the coverage of key functional markers in our analysis.




Greendatabase_annotation_table.txt:This file contains the annotation information for each MAG based on alignment with the custom Greening Lab metabolic marker gene database described above.
DOI: 10.6084/m9.figshare.28848074
title: The Cancer Genome Atlas (TCGA) Analysis

description: GWL and B55α RNA expression levels in tumour and matching normal tissues represented in the cancer genome atlas (TCGA) repository generated by the TCGA Research Network.
DOI: 10.6084/m9.figshare.28848074.v1
title: The Cancer Genome Atlas (TCGA) Analysis

description: GWL and B55α RNA expression levels in tumour and matching normal tissues represented in the cancer genome atlas (TCGA) repository generated by the TCGA Research Network.
DOI: 10.15468/dl.zm2gqn
title: Occurrence Download

description: A dataset containing 237 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Conium maculatum",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 237 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022613-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13354077
title: Multisurface plasticity for 2D models

description: Implementation of a robust multisurface return-mapping algorithm in Abaqus, dedicated for 2D models. Those files are based on the original work by Sebastian Pech and Markus Lukacevic. The present version contains modifications made by Jan Pełczyński from Warsaw University of Technology.

The original work is published at https://gitlab.imws.tuwien.ac.at/e202-02/multisurface-plasticity/

Modifications

 - The algorithm was limited to one Tsai-Wu plasticity surface. - The number of <i>Mechanical Constants</i> entered in the <i>User Material</i> module was changed.  The nine elasticity tensor parameters were replaced by four. Six Tsai-Wu yield surface parameters  were added for easier communication with the Fortran subroutine. - The dimensions of the arrays received from Abaqus and sent back have been changed  so that the passed parameters correspond to a plane stress state.  - The dimensions of all vectors and matrices have been reduced and some formulas have been changed to correspond to a plane stress state.    

Publication

This project is licensed under the GNU General Public License v3.0.If you find the subroutines useful in your work (research only), please cite all publications connected to the dataset in the repository and papers of the original authors:

1. Pech S, Lukacevic M, Füssl J. A robust multisurface return-mapping algorithm and its implementation in Abaqus. Finite. Elem. Anal. Des., 2021, 190, 103531, doi: [10.1016/j.finel.2021.103531](https://doi.org/10.1016/j.finel.2021.103531)2. Lukacevic M, Lederer W, Füssl J. A microstructure-based multisurface failure criterion for the description of brittle and ductile failure mechanisms of clear-wood.Eng. Fract. Mech., 2017, 176, 83-99, doi: [10.1016/j.engfracmech.2017.02.020](https://doi.org/10.1016/j.engfracmech.2017.02.020)3. Lukacevic, M, Füssl, J, Lampert R. Failure mechanisms of clear wood identified at wood cell level by an approach based on the extended finite element method.Eng. Fract. Mech., 2015, 144, 158-175, doi: [10.1016/j.engfracmech.2015.06.066](https://doi.org/10.1016/j.engfracmech.2015.06.066)

Authors

Jan Pełczyński (jan.pelczynski@pw.edu.pl), Warsaw University of Technology, Faculty of Civil Engineering, Al. Armii Ludowej 16, 00-637 Warsaw.

Running the calculation and input file configuration

Described in the Readme file.
DOI: 10.5281/zenodo.13354078
title: Multisurface plasticity for 2D models

description: Implementation of a robust multisurface return-mapping algorithm in Abaqus, dedicated for 2D models. Those files are based on the original work by Sebastian Pech and Markus Lukacevic. The present version contains modifications made by Jan Pełczyński from Warsaw University of Technology.

The original work is published at https://gitlab.imws.tuwien.ac.at/e202-02/multisurface-plasticity/

Modifications

 - The algorithm was limited to one Tsai-Wu plasticity surface. - The number of <i>Mechanical Constants</i> entered in the <i>User Material</i> module was changed.  The nine elasticity tensor parameters were replaced by four. Six Tsai-Wu yield surface parameters  were added for easier communication with the Fortran subroutine. - The dimensions of the arrays received from Abaqus and sent back have been changed  so that the passed parameters correspond to a plane stress state.  - The dimensions of all vectors and matrices have been reduced and some formulas have been changed to correspond to a plane stress state.    

Publication

This project is licensed under the GNU General Public License v3.0.If you find the subroutines useful in your work (research only), please cite all publications connected to the dataset in the repository and papers of the original authors:

1. Pech S, Lukacevic M, Füssl J. A robust multisurface return-mapping algorithm and its implementation in Abaqus. Finite. Elem. Anal. Des., 2021, 190, 103531, doi: [10.1016/j.finel.2021.103531](https://doi.org/10.1016/j.finel.2021.103531)2. Lukacevic M, Lederer W, Füssl J. A microstructure-based multisurface failure criterion for the description of brittle and ductile failure mechanisms of clear-wood.Eng. Fract. Mech., 2017, 176, 83-99, doi: [10.1016/j.engfracmech.2017.02.020](https://doi.org/10.1016/j.engfracmech.2017.02.020)3. Lukacevic, M, Füssl, J, Lampert R. Failure mechanisms of clear wood identified at wood cell level by an approach based on the extended finite element method.Eng. Fract. Mech., 2015, 144, 158-175, doi: [10.1016/j.engfracmech.2015.06.066](https://doi.org/10.1016/j.engfracmech.2015.06.066)

Authors

Jan Pełczyński (jan.pelczynski@pw.edu.pl), Warsaw University of Technology, Faculty of Civil Engineering, Al. Armii Ludowej 16, 00-637 Warsaw.

Running the calculation and input file configuration

Described in the Readme file.
DOI: 10.6084/m9.figshare.29580893
title: Impella data pre-close & surgical

description: These are data of Impella pre-close and surgical removal.
DOI: 10.6084/m9.figshare.29580893.v1
title: Impella data pre-close & surgical

description: These are data of Impella pre-close and surgical removal.
DOI: 10.15468/dl.s52s6g
title: Occurrence Download

description: A dataset containing 8589 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Canis lupus",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8589 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022615-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hmfacp
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAC1528"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022619-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qmu7cj
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diplotaxis vogelii"
 ]
}

 The dataset includes 95 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022620-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28829927
title: Mass Spectrometry (MS) Analysis

description: <b>MS_prometaphase_C-604_vs_DMSO_hits.csv</b><br>Phosphosites identified in STLC-arrested prometaphase HCC1395, HeLa, RPE-1 and RPE-1 B55-KD cell cells exposed to C-604 for 30 min. Dataset contains unaltered (not a hit) and impacted (negative, positive) phosphosites.
DOI: 10.6084/m9.figshare.28829927.v1
title: Mass Spectrometry (MS) Analysis

description: <b>MS_prometaphase_C-604_vs_DMSO_hits.csv</b><br>Phosphosites identified in STLC-arrested prometaphase HCC1395, HeLa, RPE-1 and RPE-1 B55-KD cell cells exposed to C-604 for 30 min. Dataset contains unaltered (not a hit) and impacted (negative, positive) phosphosites.
DOI: 10.15468/dl.8wvt4c
title: Occurrence Download

description: A dataset containing 6958 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Scirpus compressus, Scirpus compressus, Blysmus rufus, Blysmopsis rufa, Blysmus exilis, Blysmus exilis, Blysmus rufus exilis, Blysmus rufus balticus, Blysmus rufus bifolius, Chaetospora rufa)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 6958 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022616-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28829915
title: Live Cell (LC) Imaging Analysis

description: <b>LC_mitotic_defects.xlsx</b><br>Quantification of mitotic defects and mitotic timing in asynchronous live cell populations exposed to increasing doses of C-604.<br><b>LC_cell_lineages.csv</b><br>Cell lineages of HCC1395, RPE-1 and HeLa cells exposed to increasing doses of C-604.
DOI: 10.6084/m9.figshare.28829915.v1
title: Live Cell (LC) Imaging Analysis

description: <b>LC_mitotic_defects.xlsx</b><br>Quantification of mitotic defects and mitotic timing in asynchronous live cell populations exposed to increasing doses of C-604.<br><b>LC_cell_lineages.csv</b><br>Cell lineages of HCC1395, RPE-1 and HeLa cells exposed to increasing doses of C-604.
DOI: 10.15468/dl.stptjq
title: Occurrence Download

description: A dataset containing 113183 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Vireo flavifrons)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 113183 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022586-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3j5pva
title: Occurrence Download

description: A dataset containing 979598 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Vireo flavifrons)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 979598 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022584-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28829903
title: Colony Formation (CF) Analysis

description: <b>CF_C-604_ED50.csv</b><br>C-604 ED<sub>50</sub> values determined from colony formation capacity of 12 cell lines exposed to increasing doses of C-604 for 72 hours.<br><b>CF_C-604_cytostatic_effect.csv</b><br>Colony formation data used to infer C-604 ED<sub>50</sub>.<br><b>CF_siB55a_siGWL.xlsx</b><br>Colony formation in RPE-1, HeLa and BT-549 cells exposed to increasing doses of C-604 for 72 hours.<br>
DOI: 10.6084/m9.figshare.28829903.v1
title: Colony Formation (CF) Analysis

description: <b>CF_C-604_ED50.csv</b><br>C-604 ED<sub>50</sub> values determined from colony formation capacity of 12 cell lines exposed to increasing doses of C-604 for 72 hours.<br><b>CF_C-604_cytostatic_effect.csv</b><br>Colony formation data used to infer C-604 ED<sub>50</sub>.<br><b>CF_siB55a_siGWL.xlsx</b><br>Colony formation in RPE-1, HeLa and BT-549 cells exposed to increasing doses of C-604 for 72 hours.<br>