cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/8fn27s
title: Mosses of Shorsky National Park, Shoria Mountains, Altai-Sayan Mountain region.

description: The dataset includes a list of moss species registered on the on the territory of ShorskyNational Park. The investigated plots are in the belt of Abies sibirica-Populus tremula high-hebaceous forests, at altitude 600-1100 m . The list includes 180 species, samples are in NSK (USU 440537). The work is under support of RFBR ? 18-04-00822
DOI: 10.6084/m9.figshare.13516208
title: Data to run GitHub repository "ndharia-broad/peddep"

description: Data required to run GitHub repository "ndharia-broad/peddep" from A First-Generation Pediatric Cancer Dependency Map (Dharia et al, Nature Genetics 2021). Please see GitHub README for more information.
DOI: 10.6084/m9.figshare.13516208.v1
title: Data to run GitHub repository "ndharia-broad/peddep"

description: Data required to run GitHub repository "ndharia-broad/peddep" from A First-Generation Pediatric Cancer Dependency Map (Dharia et al, Nature Genetics 2021). Please see GitHub README for more information.
DOI: 10.6084/m9.figshare.11595216
title: Much more than a clasp: Evolutionary patterns of amplexus diversity in anurans

description: Amplexus data for 685 Anura Species
DOI: 10.6084/m9.figshare.11595216.v2
title: Much more than a clasp: Evolutionary patterns of amplexus diversity in anurans

description: Amplexus data for 685 Anura Species
DOI: 10.6084/m9.figshare.11595216.v1
title: Much more than a clasp: Evolutionary pattern of amplexus diversity in anurans

description: Amplexus data for 685 Anura Species
DOI: 10.6084/m9.figshare.13557902
title: Data to accompany "Termite mound cover and abundance respond to herbivore-mediated biotic changes in an African savanna"

description: Termite mound data from the KLEE plots of Mpala Research Centre.
DOI: 10.6084/m9.figshare.13557902.v1
title: Data to accompany "Termite mound cover and abundance respond to herbivore-mediated biotic changes in an African savanna"

description: Termite mound data from the KLEE plots of Mpala Research Centre.
DOI: 10.5519/qd.wspbqkja
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2407 records)
DOI: 10.15468/yhrzhf
title: Mosses of the key plot ?Kuzedeyevo-Mundybash?, Shoria Mountains, Altai-Sayan Mountain region.

description: The dataset includes a list of moss species registered on the territory of about 20x20 km located between the villages Kuzedeyevo and Mundybash, at altitude 450-700 m, with the center in so-called ?Linden island? ? a forest massive with abundant Tilia sibirica in the tree layer. Samples are in NSK (USU 440537). The work is under support of RFBR ? 18-04-00822.
DOI: 10.6084/m9.figshare.13557938.v1
title: Software testing

description: sdasdas
DOI: 10.6084/m9.figshare.13557938
title: Software testing

description: sdasdas
DOI: 10.15468/htywxs
title: Mosses of the key plot ?Mirnyy?, Salair Ridge, Altai-Sayan Mountain region.

description: The dataset includes a list of moss species registered on the area of a key plot about 20x10 km situated at the foot of the eastern leeward macroslopes of the Salair ridge, in the belt of Pinus and Betula forests, at altitudes 230-300 m. The list includes 101 species, samples are in NSK (USU 440537). The work is under support of RFBR ? 18-04-00822
DOI: 10.14457/tu.the.2019.987
title: An exploration of attitudes towards English learning of Thai high school students in three different programs

description: This study aimed to explore the attitudes towards English learning of Thai high school students in three different programs. It also explored whether there are no any differences in students’ attitudes towards English learning based on their demographic profiles. There were 126 participants in Mathayom 6 from three different programs: Science-Mathematics, Language-Arts, and General. All the participants were asked to answer all the questionnaire items via Google Forms, a survey administration app. Regarding the three aspects of attitudes i.e., emotional, behavioral, and cognitive, the participants in all three groups (Science-Mathematics, Language-Arts, and General) showed positive attitudes towards English learning. On the demographic profile, the participants in all three groups (Science-Mathematics, Language-Arts, and General) had positive attitudes towards English learning.
DOI: 10.5281/zenodo.4433209
title: Electron Microprobe Data

description: Chemical compositions of analyzed micas by EPMA from central Inner Mongolia of NE China
DOI: 10.5281/zenodo.4433208
title: Electron Microprobe Data

description: Chemical compositions of analyzed micas by EPMA from central Inner Mongolia of NE China
DOI: 10.15468/p4xtad
title: Mosses of the key plot ?Izdrevaya? (Kolyvan-Tomsk plateau, Salair-Kuznetsk region)

description: The dataset includes a list of moss species registered in the basin of Izdrevaya River (second-order tributary in the upper reaches of the Ob River) ? in area about 18x2 km with altitude 110-220 m above sea level. The vegetation cover of the territory is dominated by forests of Brachypodio pinnati?Betuletea pendulae class. The list includes 83 species, samples are in NSK (USU 440537). The work is under support of RFBR ? 18-04-00822.
DOI: 10.15468/vdy2cf
title: Mosses of the environs of Novosibirsk A?ademgorodok (Kolyvan-Tomsk plateau, Salair-Kuznetsk region)

description: The dataset includes a list of moss species registered in surrounding area of Novosibirsk akademgorodok. The area is an elevated plain with altitudes of up to 210 m. Zonal vegetation is represented by pine and birch forests of Brachypodio pinnati?Betuletea pendulae class. Samples are in NSK (USU 440537). The work is under support of RFBR ? 18-04-00822.
DOI: 10.15468/r4xsaz
title: Mosses of the ranges Azhendarovskij and Saltymakovskij (Salair-Kuznetsk region)

description: The dataset includes a list of moss species registered on the ranges Azhendarovskij and Saltymakovskij. These are low forested ridges jutting into the Kuznetsk Basin from the Kuznetsk Alatau side. The ridges are stacked with basalts. The vegetation is represented by chernevaya taiga and tall-herbaceous meadows. In the three surveyed plots 70 species were noted in sum. Samples are in NSK (USU 440537). The work is under support of RFBR ? 18-04-00822.
DOI: 10.15468/f3q3hb
title: Mosses of the key plot ?Kotorovo?, Salair Ridge, Altai-Sayan Mountain region.

description: The dataset includes a list of moss species registered on the area of a key plot about 30x10 km situated in the axial part of Salair ridge, in the belt of Abies sibirica-Populus tremula high-hebaceous forests, at altitude 300-490 m . The list includes 131 species, samples are in NSK (USU 440537). The work is under support of RFBR ? 18-04-00822
DOI: 10.6084/m9.figshare.13558402.v1
title: Additional file 3 of High-dose saccharin supplementation does not induce gut microbiota changes or glucose intolerance in healthy humans and mice

description: Additional file 2: Table S1. Baseline characteristics of participants. Table S2. Study compliance. Table S3. Detailed statistical analysis of Alpha Diversity Indices of genus and family ranks. Table S4. Detailed statistical analysis of Beta Diversity using NMDS plots and Bray Curtis dissimilarity index of the genus and family ranks. Table S5. Mean relative abundances of microbial communities and their change in response to treatment. Table S6. Linear discriminatory analysis (LDA) effect size (LEfSe) for each treatment (pre-post). Table S7. Detailed statistical analysis of Alpha Diversity Indices of genus and family ranks. Table S8. Detailed statistical analysis of Beta Diversity using NMDS plots and Bray Curtis dissimilarity index of the genus and family ranks. Table S9. Mean relative abundances of microbial communities and their change in response to treatment. Table S10. Linear discriminatory analysis (LDA) effect size (LEfSe) for each treatment (pre-post). Table S11. NMR-based metabolite changes (post-pre) comparisons between treatment groups. Table S12. Pairwise comparison between control (placebo or water) and saccharin treatment in humans and mice.
DOI: 10.6084/m9.figshare.13558402
title: Additional file 3 of High-dose saccharin supplementation does not induce gut microbiota changes or glucose intolerance in healthy humans and mice

description: Additional file 2: Table S1. Baseline characteristics of participants. Table S2. Study compliance. Table S3. Detailed statistical analysis of Alpha Diversity Indices of genus and family ranks. Table S4. Detailed statistical analysis of Beta Diversity using NMDS plots and Bray Curtis dissimilarity index of the genus and family ranks. Table S5. Mean relative abundances of microbial communities and their change in response to treatment. Table S6. Linear discriminatory analysis (LDA) effect size (LEfSe) for each treatment (pre-post). Table S7. Detailed statistical analysis of Alpha Diversity Indices of genus and family ranks. Table S8. Detailed statistical analysis of Beta Diversity using NMDS plots and Bray Curtis dissimilarity index of the genus and family ranks. Table S9. Mean relative abundances of microbial communities and their change in response to treatment. Table S10. Linear discriminatory analysis (LDA) effect size (LEfSe) for each treatment (pre-post). Table S11. NMR-based metabolite changes (post-pre) comparisons between treatment groups. Table S12. Pairwise comparison between control (placebo or water) and saccharin treatment in humans and mice.
DOI: 10.6084/m9.figshare.13558440
title: Additional file 2 of A 9 mRNAs-based diagnostic signature for rheumatoid arthritis by integrating bioinformatic analysis and machine-learning

description: Additional file 2: Table S2. Significantly GO terms and KEGG pathways
DOI: 10.6084/m9.figshare.13558440.v1
title: Additional file 2 of A 9 mRNAs-based diagnostic signature for rheumatoid arthritis by integrating bioinformatic analysis and machine-learning

description: Additional file 2: Table S2. Significantly GO terms and KEGG pathways
DOI: 10.6084/m9.figshare.13558437
title: Additional file 1 of A 9 mRNAs-based diagnostic signature for rheumatoid arthritis by integrating bioinformatic analysis and machine-learning

description: Additional file 1: Table S1. MRNA expression levels of each sample after data standardization
DOI: 10.6084/m9.figshare.13558444
title: Additional file 1 of Longitudinal analysis of cell-free mutated KRAS and CA 19–9 predicts survival following curative resection of pancreatic cancer

description: Additional file 1: Supplemental Figure 1. Univariate survival analyses for established clinicopathologic variables. A, B) Kaplan-Meier estimates of RFS (A) and OS (B) for PDAC patients stratified in two groups: patients with R1 vs. R0 resection. (C, D) Kaplan-Meier estimates of RFS (C) and OS (D) for PDAC patients stratified by postoperative CA 19–9 levels: elevated (&gt; 36 U/mL) versus normal (≤ 36 U/mL). (E, F) Kaplan-Meier estimates of RFS (E) and OS (F) for resected PDAC patients with/without adjuvant chemotherapy. OS, overall survival; RFS, recurrence-free survival; PDAC, pancreatic ductal adenocarcinoma. Univariate analyses were performed using the log-rank test. Supplemental Figure 2. Association of cfKRASmut with survival endpoints and clinicopathologic variables. (A, B) Kaplan-Meier estimates of RFS (A) and OS (B) for patients following curative resection of PDAC with versus without cfKRASmut cut-off level of &gt; 0.5% variant allele frequency (VAF) at any time point during study period. (C, D, E) cfKRASmut (C), total cell-free DNA (D) and CA 19–9 levels (E) in untreated resected PDAC patients were compared to resection margin. OS, overall survival; RFS, recurrence-free survival; PDAC, pancreatic ductal adenocarcinoma
DOI: 10.6084/m9.figshare.13558437.v1
title: Additional file 1 of A 9 mRNAs-based diagnostic signature for rheumatoid arthritis by integrating bioinformatic analysis and machine-learning

description: Additional file 1: Table S1. MRNA expression levels of each sample after data standardization
DOI: 10.6084/m9.figshare.13558444.v1
title: Additional file 1 of Longitudinal analysis of cell-free mutated KRAS and CA 19–9 predicts survival following curative resection of pancreatic cancer

description: Additional file 1: Supplemental Figure 1. Univariate survival analyses for established clinicopathologic variables. A, B) Kaplan-Meier estimates of RFS (A) and OS (B) for PDAC patients stratified in two groups: patients with R1 vs. R0 resection. (C, D) Kaplan-Meier estimates of RFS (C) and OS (D) for PDAC patients stratified by postoperative CA 19–9 levels: elevated (&gt; 36 U/mL) versus normal (≤ 36 U/mL). (E, F) Kaplan-Meier estimates of RFS (E) and OS (F) for resected PDAC patients with/without adjuvant chemotherapy. OS, overall survival; RFS, recurrence-free survival; PDAC, pancreatic ductal adenocarcinoma. Univariate analyses were performed using the log-rank test. Supplemental Figure 2. Association of cfKRASmut with survival endpoints and clinicopathologic variables. (A, B) Kaplan-Meier estimates of RFS (A) and OS (B) for patients following curative resection of PDAC with versus without cfKRASmut cut-off level of &gt; 0.5% variant allele frequency (VAF) at any time point during study period. (C, D, E) cfKRASmut (C), total cell-free DNA (D) and CA 19–9 levels (E) in untreated resected PDAC patients were compared to resection margin. OS, overall survival; RFS, recurrence-free survival; PDAC, pancreatic ductal adenocarcinoma
DOI: 10.6084/m9.figshare.13558503.v1
title: Additional file 8 of Multi-responses of O-methyltransferase genes to salt stress and fiber development of Gossypium species

description: Additional file 8: Table S5. Structural features of OMT genes.
DOI: 10.6084/m9.figshare.13558497
title: Additional file 6 of Multi-responses of O-methyltransferase genes to salt stress and fiber development of Gossypium species

description: Additional file 6: Table S3. Basic information and analyses of OMT genes in Gossypium species (Sheet A), and in A. thaliana and T. cacao (Sheet B).
DOI: 10.6084/m9.figshare.13558497.v1
title: Additional file 6 of Multi-responses of O-methyltransferase genes to salt stress and fiber development of Gossypium species

description: Additional file 6: Table S3. Basic information and analyses of OMT genes in Gossypium species (Sheet A), and in A. thaliana and T. cacao (Sheet B).
DOI: 10.6084/m9.figshare.13558500
title: Additional file 7 of Multi-responses of O-methyltransferase genes to salt stress and fiber development of Gossypium species

description: Additional file 7: Table S4. Analyses of duplication events and selection pressure. Sheet A: The analysis of duplication events of OMT genes in A genome (G. arboreum), D genome (G. raimondii), and AtDt genomes (G. hirsutum). Sheet B: The comparative analysis of selection pressure (Ka/Ks) of OMT genes in G. raimondii, G. arboreum, and G. hirsutum.
DOI: 10.6084/m9.figshare.13558500.v1
title: Additional file 7 of Multi-responses of O-methyltransferase genes to salt stress and fiber development of Gossypium species

description: Additional file 7: Table S4. Analyses of duplication events and selection pressure. Sheet A: The analysis of duplication events of OMT genes in A genome (G. arboreum), D genome (G. raimondii), and AtDt genomes (G. hirsutum). Sheet B: The comparative analysis of selection pressure (Ka/Ks) of OMT genes in G. raimondii, G. arboreum, and G. hirsutum.
DOI: 10.6084/m9.figshare.13558503
title: Additional file 8 of Multi-responses of O-methyltransferase genes to salt stress and fiber development of Gossypium species

description: Additional file 8: Table S5. Structural features of OMT genes.
DOI: 10.6084/m9.figshare.13558527
title: Additional file 2 of Fitting a shared frailty illness-death model to left-truncated semi-competing risks data to examine the impact of education level on incident dementia

description: r code for implementation. File names: fit-models.txt and functions.txt provide code for generating simulated semi-competing risks data and fitting the shared frailty illness-death model to left-truncated semi-competing risks data described in the manuscript.
DOI: 10.6084/m9.figshare.13558527.v1
title: Additional file 2 of Fitting a shared frailty illness-death model to left-truncated semi-competing risks data to examine the impact of education level on incident dementia

description: r code for implementation. File names: fit-models.txt and functions.txt provide code for generating simulated semi-competing risks data and fitting the shared frailty illness-death model to left-truncated semi-competing risks data described in the manuscript.
DOI: 10.6084/m9.figshare.13558531.v1
title: Additional file 10 of The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals

description: Additional file 10: List of the six anthozoan species used for the comparison with Corallium rubrum biominerals proteome. Nucleotide databases are indicated for each species.
DOI: 10.6084/m9.figshare.13558531
title: Additional file 10 of The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals

description: Additional file 10: List of the six anthozoan species used for the comparison with Corallium rubrum biominerals proteome. Nucleotide databases are indicated for each species.
DOI: 10.6084/m9.figshare.13558534
title: Additional file 11 of The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals

description: Additional file 11: List of putative homologs between Corallium rubrum biomineral proteomes and skeletomes of three scleractinian species Acropora millepora, Acropora digitifera and Styllophora pistilata [16, 18, 21].
DOI: 10.6084/m9.figshare.13558549.v1
title: Additional file 3 of The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals

description: Additional file 3: Table of details for the 102 identified proteins in C. rubrum biominerals. For each identified protein in each OM fraction, unique peptide count, spectrum count, percentage of spectra, protein probability, percent protein coverage, exponentially modified protein abundance index (emPAI) and weighted spectra (WS) values are reported in sheet#1. Amino acid length, pI, charge at pH = 8, molecular weight (MW in Dalton Da), low complexity region, InterProscan protein signatures, description, subcellular (SubCell) localization prediction, BLAST (NCBI_ref-seq) result with first hit species and taxonomy, conservation in other anthozoan (BLAST e-val &gt; 1e-15) and in scleractinian OM are listed in sheet#2. SOMax: Soluble Organic Matrix of the axial skeleton (dark blue), IOMax: Insoluble Organic Matrix of the axial skeleton (blue), SOMsc: Soluble Organic Matrix of the sclerites (yellow), IOMsc: Insoluble Organic Matrix of the sclerites (red). Empty circles: 1 unique peptide count.
DOI: 10.6084/m9.figshare.13558540
title: Additional file 13 of The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals

description: Additional file 13: List of proteins and peptides identified in the SOMs and IOMs of the axial skeleton and the sclerites of Corallium rubrum. For each identified protein, identified peptides are listed. For each peptide, amino acid sequence, spectra and Mascot information are listed. SOMax: soluble organic matrix of the axial skeleton (sheet#1); IOMax: insoluble organic matrix of the axial skeleton (sheet#2); SOMsc: soluble organic matrix of the sclerites (sheet#3); IOMsc: insoluble organic matrix of the sclerites (sheet#4).
DOI: 10.6084/m9.figshare.13558540.v1
title: Additional file 13 of The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals

description: Additional file 13: List of proteins and peptides identified in the SOMs and IOMs of the axial skeleton and the sclerites of Corallium rubrum. For each identified protein, identified peptides are listed. For each peptide, amino acid sequence, spectra and Mascot information are listed. SOMax: soluble organic matrix of the axial skeleton (sheet#1); IOMax: insoluble organic matrix of the axial skeleton (sheet#2); SOMsc: soluble organic matrix of the sclerites (sheet#3); IOMsc: insoluble organic matrix of the sclerites (sheet#4).
DOI: 10.6084/m9.figshare.13558543.v1
title: Additional file 1 of The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals

description: Additional file 1: List of the 34 identified proteins in Corallium rubrum biominerals that are distributed into 9 protein families.
DOI: 10.6084/m9.figshare.13558549
title: Additional file 3 of The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals

description: Additional file 3: Table of details for the 102 identified proteins in C. rubrum biominerals. For each identified protein in each OM fraction, unique peptide count, spectrum count, percentage of spectra, protein probability, percent protein coverage, exponentially modified protein abundance index (emPAI) and weighted spectra (WS) values are reported in sheet#1. Amino acid length, pI, charge at pH = 8, molecular weight (MW in Dalton Da), low complexity region, InterProscan protein signatures, description, subcellular (SubCell) localization prediction, BLAST (NCBI_ref-seq) result with first hit species and taxonomy, conservation in other anthozoan (BLAST e-val &gt; 1e-15) and in scleractinian OM are listed in sheet#2. SOMax: Soluble Organic Matrix of the axial skeleton (dark blue), IOMax: Insoluble Organic Matrix of the axial skeleton (blue), SOMsc: Soluble Organic Matrix of the sclerites (yellow), IOMsc: Insoluble Organic Matrix of the sclerites (red). Empty circles: 1 unique peptide count.
DOI: 10.6084/m9.figshare.13558534.v1
title: Additional file 11 of The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals

description: Additional file 11: List of putative homologs between Corallium rubrum biomineral proteomes and skeletomes of three scleractinian species Acropora millepora, Acropora digitifera and Styllophora pistilata [16, 18, 21].
DOI: 10.6084/m9.figshare.13558543
title: Additional file 1 of The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals

description: Additional file 1: List of the 34 identified proteins in Corallium rubrum biominerals that are distributed into 9 protein families.
DOI: 10.6084/m9.figshare.13558546
title: Additional file 2 of The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals

description: Additional file 2: Genomic and transcriptomic sequences corresponding to the 107 proteins initially identified in Corallium rubrum biominerals. The final sequences for CR3_4, CR_10_28_60, and CR_62_76_82 are also listed.
DOI: 10.6084/m9.figshare.13558546.v1
title: Additional file 2 of The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals

description: Additional file 2: Genomic and transcriptomic sequences corresponding to the 107 proteins initially identified in Corallium rubrum biominerals. The final sequences for CR3_4, CR_10_28_60, and CR_62_76_82 are also listed.
DOI: 10.6084/m9.figshare.13558609.v1
title: Additional file 1 of Flexible modelling of risk factors on the incidence of pneumonia in young children in South Africa using piece-wise exponential additive mixed modelling

description: Additional file 1 Supplementary file.
DOI: 10.6084/m9.figshare.13558609
title: Additional file 1 of Flexible modelling of risk factors on the incidence of pneumonia in young children in South Africa using piece-wise exponential additive mixed modelling

description: Additional file 1 Supplementary file.