cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30919042
title: An Analytical Perspective on Liquid Chromatography-Mass Spectrometry Methods for the Analysis of Bile Acids in Human Blood Samples

description: Bile acids (BA) are traditionally recognized as detergents that facilitate lipid and glucose digestion and homeostasis. More recently, they have emerged as signaling molecules with the ability to influence metabolic processes <i>via</i> the gut-brain axis. BA are implicated in a wide range of diseases and conditions, including gastrointestinal, hepatobiliary, metabolic, cardiovascular, and neurological disorders. Accurate quantification of total bile acids (TBA) and individual BA species is essential for understanding their roles in health and disease. Liquid chromatography coupled with mass spectrometry (LC-MS) offers the sensitivity and selectivity required to detect these metabolites at trace levels in human blood samples. This systematic review critically examines validated LC-MS methodologies for BA analysis in human blood, focusing on studies published between January 2010 and April 2024. It highlights experimental designs, validation criteria, and methodological differences, aiming to inform the development of standardized analytical protocols. By addressing current gaps and emphasizing comprehensive analytical validation, this review seeks to enhance the reliability of BA quantification and support future biomarker discovery and clinical applications.
DOI: 10.6084/m9.figshare.30919042.v1
title: An Analytical Perspective on Liquid Chromatography-Mass Spectrometry Methods for the Analysis of Bile Acids in Human Blood Samples

description: Bile acids (BA) are traditionally recognized as detergents that facilitate lipid and glucose digestion and homeostasis. More recently, they have emerged as signaling molecules with the ability to influence metabolic processes <i>via</i> the gut-brain axis. BA are implicated in a wide range of diseases and conditions, including gastrointestinal, hepatobiliary, metabolic, cardiovascular, and neurological disorders. Accurate quantification of total bile acids (TBA) and individual BA species is essential for understanding their roles in health and disease. Liquid chromatography coupled with mass spectrometry (LC-MS) offers the sensitivity and selectivity required to detect these metabolites at trace levels in human blood samples. This systematic review critically examines validated LC-MS methodologies for BA analysis in human blood, focusing on studies published between January 2010 and April 2024. It highlights experimental designs, validation criteria, and methodological differences, aiming to inform the development of standardized analytical protocols. By addressing current gaps and emphasizing comprehensive analytical validation, this review seeks to enhance the reliability of BA quantification and support future biomarker discovery and clinical applications.
DOI: 10.6084/m9.figshare.29423142
title: Removal of toxic heavy metals from wastewater: recent updates and future outlooks on eggshell as a promising low-cost adsorbent

description: Heavy metal ions in wastewater pose a significant global challenge to environmental pollution, despite technological advancements. Proper treating of these heavy metals is crucial to prevent human health risks, making wastewater treatment a critical global issue. Since the toxic metals in the water could not be entirely removed by a conventional treatment system, new purification techniques employing low-cost materials were investigated to enhance the present treatment procedure. Various inexpensive adsorbents were employed to extract heavy metals from wastewater and aqueous solutions, such as agricultural, seafood, and food waste. This investigation aims to assess the techniques, benefits, regeneration, and future prospects of eggshells for toxic heavy metal adsorption in wastewater treatment, particularly chromium, cadmium, lead, arsenic, nickel, and mercury. This assessment summarises the characteristics that affect maximum adsorption capacity, such as pH, contact duration, temperature, initiating concentration, and adsorbent quantity. A thorough grasp of the kinetic uptake of the chosen adsorbents was also provided by comparisons between the modified and natural eggshell adsorbents. The major takeaways from this review are as follows: chemically or physically modified eggshells exhibit higher adsorption capacity, with calcined eggshell, eggshell powder, and powder-doped iron oxide-hydroxide modified eggshell achieving 100% Cr and 76.32% Ni removal, 95.93% Cd, and 100% Pb removal respectively; the combination of ideal parameters leads to better adsorption; and the regeneration capability of chicken eggshell leads to an environmentally viable method of disposing of waste adsorbents. The prospective quality of economical eggshell adsorbents for wastewater treatment applications can be evaluated with the help of this review.
DOI: 10.6084/m9.figshare.29423142.v1
title: Removal of toxic heavy metals from wastewater: recent updates and future outlooks on eggshell as a promising low-cost adsorbent

description: Heavy metal ions in wastewater pose a significant global challenge to environmental pollution, despite technological advancements. Proper treating of these heavy metals is crucial to prevent human health risks, making wastewater treatment a critical global issue. Since the toxic metals in the water could not be entirely removed by a conventional treatment system, new purification techniques employing low-cost materials were investigated to enhance the present treatment procedure. Various inexpensive adsorbents were employed to extract heavy metals from wastewater and aqueous solutions, such as agricultural, seafood, and food waste. This investigation aims to assess the techniques, benefits, regeneration, and future prospects of eggshells for toxic heavy metal adsorption in wastewater treatment, particularly chromium, cadmium, lead, arsenic, nickel, and mercury. This assessment summarises the characteristics that affect maximum adsorption capacity, such as pH, contact duration, temperature, initiating concentration, and adsorbent quantity. A thorough grasp of the kinetic uptake of the chosen adsorbents was also provided by comparisons between the modified and natural eggshell adsorbents. The major takeaways from this review are as follows: chemically or physically modified eggshells exhibit higher adsorption capacity, with calcined eggshell, eggshell powder, and powder-doped iron oxide-hydroxide modified eggshell achieving 100% Cr and 76.32% Ni removal, 95.93% Cd, and 100% Pb removal respectively; the combination of ideal parameters leads to better adsorption; and the regeneration capability of chicken eggshell leads to an environmentally viable method of disposing of waste adsorbents. The prospective quality of economical eggshell adsorbents for wastewater treatment applications can be evaluated with the help of this review.
DOI: 10.15468/dl.j9s756
title: Occurrence Download

description: A dataset containing 549 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Serissa japonica",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 549 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060062-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14221281
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.q5ynk7
title: Occurrence Download

description: A dataset containing 280 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Begonia meyeri-johannis",
 "Year 1970-2025"
 ]
}

 The dataset includes 280 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060064-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4qmeqp
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Nepal",
 "OccurrenceStatus is Present",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "TaxonKey is Lantana camara"
 ]
}

 The dataset includes 99 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060065-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15608274
title: Data for publication "Evaluation of Semi-Implicit and Explicit Sedimentation Approaches in the Two-Moment Cloud Microphysics Scheme of ICON"
DOI: 10.5281/zenodo.17782126
title: Data for publication "Evaluation of Semi-Implicit and Explicit Sedimentation Approaches in the Two-Moment Cloud Microphysics Scheme of ICON"
DOI: 10.5281/zenodo.13910771
title: Prompts and outputs in the demo video

description: for VISSOFT 2025
DOI: 10.5281/zenodo.15393945
title: Threat Model-driven Test Framework for Security and Privacy of Agentic LLM Applications: supporting materials

description: This repository provides the supporting materials for the submission entitled "A Security and Privacy Threat Model for Agentic LLM Applications".

It consists of 



Threat model



ThreatModel.pdf: a self-contained and complete threat model report, which includes:



DFD and details about the DFD construction

STRIDE and LINDDUN analysis and results

In-depth mapping to other catalogs and frameworks, i.e. OWASP, MCP, and Unit41.



Threat model source files (SPARTA)

Raw CSV of the generated threats

Completed threat model Excel file which contains the threats, their severity assessment, the mapping onto frameworks and onto the test cases



Test framework



README.md / README.pdf providing detailed explanations of the test framework design, test case definition, and instructions to execute and reproduce

Source code of the test framework, 

Source code of the implemented test cases,

Logs of the reported test runs and their detailed outcomes
DOI: 10.5281/zenodo.15495000
title: Prompts and outputs in the demo video

description: for VISSOFT 2025
DOI: 10.5281/zenodo.17962865
title: Threat Model-driven Test Framework for Security and Privacy of Agentic LLM Applications: supporting materials

description: This repository provides the supporting materials for the submission entitled "A Security and Privacy Threat Model for Agentic LLM Applications".

It consists of 



Threat model



ThreatModel.pdf: a self-contained and complete threat model report, which includes:



DFD and details about the DFD construction

STRIDE and LINDDUN analysis and results

In-depth mapping to other catalogs and frameworks, i.e. OWASP, MCP, and Unit41.



Threat model source files (SPARTA)

Raw CSV of the generated threats

Completed threat model Excel file which contains the threats, their severity assessment, the mapping onto frameworks and onto the test cases



Test framework



README.md / README.pdf providing detailed explanations of the test framework design, test case definition, and instructions to execute and reproduce

Source code of the test framework, 

Source code of the implemented test cases,

Logs of the reported test runs and their detailed outcomes
DOI: 10.15468/dl.cpc68a
title: Occurrence Download

description: A dataset containing 3722138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "OccurrenceStatus is Present",
 "TaxonKey is Cygnus"
 ]
}

 The dataset includes 3722138 records from 145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060038-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u6n7xv
title: Occurrence Download

description: A dataset containing 9385 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tagetes erecta",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 9385 records from 456 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060067-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tetacz
title: Occurrence Download

description: A dataset containing 299416 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Puma concolor, Abies alba)"
 ]
}

 The dataset includes 299416 records from 1477 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060056-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5gnsn
title: Occurrence Download

description: A dataset containing 66758 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pedicularis sylvatica L., Pedicularis ascendens Schleich. ex Gaudin, Petasites paradoxus (Retz.) Baumg.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 66758 records from 299 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160239-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.74u7p8
title: Occurrence Download

description: A dataset containing 5575 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-10000.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Coordinate reprojected",
 "Issue is Country derived from coordinates",
 "Issue is Recorded date invalid"
 ]
 },
 "OccurrenceStatus is Present",
 "TaxonKey is Catalpa bignonioides Walter"
 ]
}

 The dataset includes 5575 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0419515-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yafqd4
title: Occurrence Download

description: A dataset containing 574 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "TaxonKey is Neottia cordata (L.) Rich.",
 "Year is greater than or equal to 1928"
 ]
}

 The dataset includes 574 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053162-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.prtc9v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bryanites graeffii sp. n. (Coleoptera, Carabidae): museum rediscovery of a relict species from Samoa"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0341193-200613084148143/datasets/export for details.
DOI: 10.15468/dl.cdcx87
title: Occurrence Download

description: A dataset containing 913 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Biomphalaria Preston, 1910",
 "Year 1947-2021"
 ]
}

 The dataset includes 913 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0419521-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cwbw3f
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Speothos venaticus (Lund, 1842)"
 ]
}

 The dataset includes 17 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070974-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bslsej
title: Occurrence Download

description: A dataset containing 1464 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dalbergia monetaria L.f."
 ]
}

 The dataset includes 1464 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034296-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrn843
title: Occurrence Download

description: A dataset containing 131925 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Erica L."
 ]
}

 The dataset includes 131925 records from 373 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0426166-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u8e6yp
title: Occurrence Download

description: A dataset containing 17004 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-5000.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hyphantria cunea (Drury, 1773)",
 "Year 1000-2024"
 ]
}

 The dataset includes 17004 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056611-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vftm5q
title: Occurrence Download

description: A dataset containing 15900 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Puma concolor (Linnaeus, 1771)"
 ]
}

 The dataset includes 15900 records from 278 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158553-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.je3tab
title: Occurrence Download

description: A dataset containing 2220 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Síndrome de nariz blanca: Una zoonosis emergente que amenaza los quirópteros de México"
 ]
}

 The dataset includes 2220 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0341230-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9tsmnm
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dalbergia bakeri Welw. ex Baker"
 ]
}

 The dataset includes 66 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0144359-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pctf67
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Yucca endlichiana Trel."
 ]
}

 The dataset includes 51 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021978-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ry7q5
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Inventaire biodiversité du site Pierre Fabre de Gaillac"
 ]
}

 The dataset includes 116 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0341209-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.95brkx
title: Occurrence Download

description: A dataset containing 144528 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abies alba Mill."
 ]
}

 The dataset includes 144528 records from 445 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0144356-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.anz9gc
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Occurrence evidence"
 ]
 },
 "Country is Philippines",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhabdotorrhinus waldeni (Sharpe, 1877)",
 "Year 2001-2022"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219430-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qcgtgd
title: Occurrence Download

description: A dataset containing 703 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hakea macraeana F.Muell."
 ]
}

 The dataset includes 703 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002576-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.