cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4270320
title: Gene expression and splicing counts from the Kremer et al study

description: <strong>File description:</strong> geneCounts: gene-level counts k_j: split counts spanning from one exon to another. k_theta: non-split counts covering a splice site n_psi3: total split counts from a given acceptor site n_psi5: total split counts from a given donor site n_theta: total split and non-split counts for a given splice site Sample annotation describing each sample from the dataset Description file with global information from the dataset The gene counts were originated using the GTF file from release 34 of GENCODE https://www.gencodegenes.org/human/release_34, and the split and non-split counts contain only the annonated junctions from the same release. <strong>Use: </strong>The count matrices are intended to help researchers that are interested in using RNA-Seq data with the purpose of diagnostics. Researchers can merge their own dataset with the downloaded ones, provided the tissue, genome build, strand, and paired-end specifications match. Afterwards, the DROP pipeline can be used to compute expression and splicing outliers (https://github.com/gagneurlab/drop). <strong>Number of samples: </strong>119<br> <strong>Tissue:</strong> Fibroblast<br> <strong>Organism:</strong> Homo sapiens<br> <strong>Genome assembly:</strong> hg19<br> <strong>Gene annotation:</strong> gencode34<br> <strong>Disease (ICD-10: N):</strong> E75: 1, E79: 13, E88: 84, G31: 9, K72: 3, NONE: 9<br> <strong>Strand specific:</strong> FALSE<br> <strong>Paired end:</strong> TRUE<br> <strong>Contact person:</strong> Vicente Yepez, yepez@in.tum.de; Christian Mertes, mertes@in.tum.de<br>
description: {"references": ["Kremer, L., Bader, D., Mertes, C. et al. Genetic diagnosis of Mendelian disorders via RNA sequencing. Nat Commun 8, 15824 (2017). https://doi.org/10.1038/ncomms15824"]}
DOI: 10.5281/zenodo.4270335
title: Generic High Performance Exact Combinatorial Search

description: Data for YewPar paper
DOI: 10.5281/zenodo.4243080
title: Matériel supplémentaire pour Hermann & Walworth (2020, Journal de la Société des Océanistes, 'Approche interdisciplinaire des échanges interculturels et de l'intégration des communautés polynésiennes dans le centre du Vanuatu')

description: Ces fichiers sont un supplément à Hermann & Walworth (2020, Journal de la Société des Océanistes, 'Approche interdisciplinaire des échanges interculturels et de l’intégration des communautés polynésiennes dans le centre du Vanuatu'). Résumé :<br> Le centre du Vanuatu est connu pour ses chefferies à titres et des affiliations claniques qui rappellent celles des sociétés polynésiennes. Par ailleurs, la présence de communautés locutrices de langues polynésiennes à Mele, Ifira et Emae révèle des contacts et des migrations depuis des îles polynésiennes plusieurs siècles avant l’arrivée des Européens. Dans cet article, nous analysons l’ensemble des données linguistiques disponibles afin d’identifier les emprunts lexicaux entre langues polynésiennes et non-polynésiennes. Nous examinons les valeurs sémantiques des formes lexicales discutées en prenant en compte les données ethnographiques et archéologiques disponibles. Cette approche, inspirée de la méthode dite « de triangulation » de P. Kirch et R. Green, nous permet d’explorer les interactions qui ont participé à la constitution d’une sphère interculturelle originale. Nous fournissons également des informations sur les éléments susceptibles de constituer les signatures archéologiques associées aux occupations polynésiennes du Vanuatu central.<br> Mots-clés : Vanuatu, Polynesian outliers, emprunts linguistiques, échanges culturels, anthropologie historique These files are a supplement to Hermann & Walworth (2020, Journal de la Société des Océanistes, 'Approche interdisciplinaire des échanges interculturels et de l’intégration des communautés polynésiennes dans le centre du Vanuatu') Abstract :<br> Central Vanuatu is known for its chiefdoms based on titles and clan affiliations, which are reminiscent of the typical social organization in Polynesia. Moreover, the presence of several Polynesian-speaking communities in the outliers of Mele, Ifira and Emae proves that migrations from Polynesian islands occurred centuries before European contact. In this paper, we analyze the available linguistic data in order to identify loanwords between Polynesian and non-Polynesian languages. We examine multiple sources of information to document the semantic values of the discussed forms, including ethnographic and archaeological sources. This approach, inspired by the ‘triangulation method’ developed by P. Kirch and R. Green, provides evidence for specific patterns of interaction that created a unique cultural sphere in central Vanuatu. Furthermore, this paper provides insight onto the kinds of items that should be present in the archaeological signatures of Polynesian occupations in this region.<br> Keywords : Vanuatu, Polynesian outliers, linguistic borrowing, cultural exchange, historical anthropology
DOI: 10.5517/ccdc.csd.cc1mdg8r
title: CCDC 1501524: Experimental Crystal Structure Determination

description: Related Article: Sedigheh Abedanzadeh, Kazem Karami, Mostafa Rahimi, Masoud Edalati, Mozhgan Abedanzadeh, Ali mohammad Tamaddon, Maryam Dehdashti Jahromi, Zahra Amirghofran, Janusz Lipkowski, Krzysztof Lyczko|2020|Dalton Trans.|49|14891|doi:10.1039/D0DT02304C
DOI: 10.5517/ccdc.csd.cc1zzcy8
title: CCDC 1846451: Experimental Crystal Structure Determination

description: Related Article: Jaclyn L. Lange, Patrick R. W. J. Davey, Michelle T. Ma, Jonathan M. White, Alfred Morgenstern, Frank Bruchertseifer, Philip J. Blower, Brett M. Paterson|2020|Dalton Trans.|49|14962|doi:10.1039/D0DT02673E
DOI: 10.5517/ccdc.csd.cc1zzcz9
title: CCDC 1846452: Experimental Crystal Structure Determination

description: Related Article: Jaclyn L. Lange, Patrick R. W. J. Davey, Michelle T. Ma, Jonathan M. White, Alfred Morgenstern, Frank Bruchertseifer, Philip J. Blower, Brett M. Paterson|2020|Dalton Trans.|49|14962|doi:10.1039/D0DT02673E
DOI: 10.5517/ccdc.csd.cc24xz46
title: CCDC 1994048: Experimental Crystal Structure Determination

description: Related Article: Ming Kong, Xin Feng, Jing Li, Zhao-Bo Hu, Jia Wang, Xiao-Jiao Song, Zhao-Yang Jing, Yi-Quan Zhang, You Song|2020|Dalton Trans.|49|14931|doi:10.1039/D0DT02864A
DOI: 10.5517/ccdc.csd.cc24xz68
title: CCDC 1994050: Experimental Crystal Structure Determination

description: Related Article: Ming Kong, Xin Feng, Jing Li, Zhao-Bo Hu, Jia Wang, Xiao-Jiao Song, Zhao-Yang Jing, Yi-Quan Zhang, You Song|2020|Dalton Trans.|49|14931|doi:10.1039/D0DT02864A
DOI: 10.5517/ccdc.csd.cc24xz79
title: CCDC 1994051: Experimental Crystal Structure Determination

description: Related Article: Ming Kong, Xin Feng, Jing Li, Zhao-Bo Hu, Jia Wang, Xiao-Jiao Song, Zhao-Yang Jing, Yi-Quan Zhang, You Song|2020|Dalton Trans.|49|14931|doi:10.1039/D0DT02864A
DOI: 10.5517/ccdc.csd.cc24xz8b
title: CCDC 1994052: Experimental Crystal Structure Determination

description: Related Article: Ming Kong, Xin Feng, Jing Li, Zhao-Bo Hu, Jia Wang, Xiao-Jiao Song, Zhao-Yang Jing, Yi-Quan Zhang, You Song|2020|Dalton Trans.|49|14931|doi:10.1039/D0DT02864A
DOI: 10.5517/ccdc.csd.cc25dhhl
title: CCDC 2008009: Experimental Crystal Structure Determination

description: Related Article: John T. Ferguson, Qifeng Jiang, Eric A. Marro, Maxime A. Siegler, Rebekka S. Klausen|2020|Dalton Trans.|49|14951|doi:10.1039/D0DT03163A
DOI: 10.5517/ccdc.csd.cc25dhjm
title: CCDC 2008010: Experimental Crystal Structure Determination

description: Related Article: John T. Ferguson, Qifeng Jiang, Eric A. Marro, Maxime A. Siegler, Rebekka S. Klausen|2020|Dalton Trans.|49|14951|doi:10.1039/D0DT03163A
DOI: 10.5517/ccdc.csd.cc25dhkn
title: CCDC 2008011: Experimental Crystal Structure Determination

description: Related Article: John T. Ferguson, Qifeng Jiang, Eric A. Marro, Maxime A. Siegler, Rebekka S. Klausen|2020|Dalton Trans.|49|14951|doi:10.1039/D0DT03163A
DOI: 10.5517/ccdc.csd.cc25dhlp
title: CCDC 2008012: Experimental Crystal Structure Determination

description: Related Article: John T. Ferguson, Qifeng Jiang, Eric A. Marro, Maxime A. Siegler, Rebekka S. Klausen|2020|Dalton Trans.|49|14951|doi:10.1039/D0DT03163A
DOI: 10.5517/ccdc.csd.cc2685b0
title: CCDC 2033641: Experimental Crystal Structure Determination

description: Related Article: Ming Kong, Xin Feng, Jing Li, Zhao-Bo Hu, Jia Wang, Xiao-Jiao Song, Zhao-Yang Jing, Yi-Quan Zhang, You Song|2020|Dalton Trans.|49|14931|doi:10.1039/D0DT02864A
DOI: 10.5517/ccdc.csd.cc26f6ql
title: CCDC 2038489: Experimental Crystal Structure Determination

description: Related Article: Peijie Zhang, Xingyu Tang, Yida Wang, Xuan Wang, Dexiang Gao, Yapei Li, Haiyan Zheng, Yajie Wang, Xinxin Wang, Riqiang Fu, Mingxue Tang, Kazutaka Ikeda, Ping Miao, Takanori Hattori, Asami Sano-Furukawa, Christopher A. Tulk, Jamie J. Molaison, Xiao Dong, Kuo Li, Jing Ju, Ho-kwang Mao|2020|J.Am.Chem.Soc.|142|17662|doi:10.1021/jacs.0c08274
DOI: 10.5517/ccdc.csd.cc25n9x2
title: CCDC 2015524: Experimental Crystal Structure Determination

description: Related Article: Subrata Ghosh, Sukanya Bagchi, Mayurika Das, Sujit Kamilya, Abhishake Mondal|2020|Dalton Trans.|49|14776|doi:10.1039/D0DT02746D
DOI: 10.5517/ccdc.csd.cc25n9tz
title: CCDC 2015521: Experimental Crystal Structure Determination

description: Related Article: Subrata Ghosh, Sukanya Bagchi, Mayurika Das, Sujit Kamilya, Abhishake Mondal|2020|Dalton Trans.|49|14776|doi:10.1039/D0DT02746D
DOI: 10.5517/ccdc.csd.cc25n87c
title: CCDC 2015472: Experimental Crystal Structure Determination

description: Related Article: Subrata Ghosh, Sukanya Bagchi, Mayurika Das, Sujit Kamilya, Abhishake Mondal|2020|Dalton Trans.|49|14776|doi:10.1039/D0DT02746D
DOI: 10.5517/ccdc.csd.cc26f6kf
title: CCDC 2038484: Experimental Crystal Structure Determination

description: Related Article: Bochao Su, Arseni Kostenko, Shenglai Yao, Matthias Driess|2020|J.Am.Chem.Soc.|142|16935|doi:10.1021/jacs.0c09040
DOI: 10.5517/ccdc.csd.cc26f6lg
title: CCDC 2038485: Experimental Crystal Structure Determination

description: Related Article: Bochao Su, Arseni Kostenko, Shenglai Yao, Matthias Driess|2020|J.Am.Chem.Soc.|142|16935|doi:10.1021/jacs.0c09040
DOI: 10.5517/ccdc.csd.cc26f6mh
title: CCDC 2038486: Experimental Crystal Structure Determination

description: Related Article: Bochao Su, Arseni Kostenko, Shenglai Yao, Matthias Driess|2020|J.Am.Chem.Soc.|142|16935|doi:10.1021/jacs.0c09040
DOI: 10.5517/ccdc.csd.cc26f6nj
title: CCDC 2038487: Experimental Crystal Structure Determination

description: Related Article: Bochao Su, Arseni Kostenko, Shenglai Yao, Matthias Driess|2020|J.Am.Chem.Soc.|142|16935|doi:10.1021/jacs.0c09040
DOI: 10.5517/ccdc.csd.cc26f6hc
title: CCDC 2038482: Experimental Crystal Structure Determination

description: Related Article: Bin Liang, Xin Zhang, Yi Xie, Rui-Biao Lin, Rajamani Krishna, Hui Cui, Zhiqiang Li, Yanshu Shi, Hui Wu, Wei Zhou, Banglin Chen|2020|J.Am.Chem.Soc.|142|17795|doi:10.1021/jacs.0c09466
DOI: 10.5517/ccdc.csd.cc26f6jd
title: CCDC 2038483: Experimental Crystal Structure Determination

description: Related Article: Bin Liang, Xin Zhang, Yi Xie, Rui-Biao Lin, Rajamani Krishna, Hui Cui, Zhiqiang Li, Yanshu Shi, Hui Wu, Wei Zhou, Banglin Chen|2020|J.Am.Chem.Soc.|142|17795|doi:10.1021/jacs.0c09466
DOI: 10.5517/ccdc.csd.cc25qby6
title: CCDC 2017478: Experimental Crystal Structure Determination

description: Related Article: Luis M. Aguirre Quintana, Ningxin Jiang, John Bacsa, Henry S. La Pierre|2020|Dalton Trans.|49|14908|doi:10.1039/D0DT03472J
DOI: 10.5517/ccdc.csd.cc25qc09
title: CCDC 2017480: Experimental Crystal Structure Determination

description: Related Article: Luis M. Aguirre Quintana, Ningxin Jiang, John Bacsa, Henry S. La Pierre|2020|Dalton Trans.|49|14908|doi:10.1039/D0DT03472J
DOI: 10.5517/ccdc.csd.cc25qbz7
title: CCDC 2017479: Experimental Crystal Structure Determination

description: Related Article: Luis M. Aguirre Quintana, Ningxin Jiang, John Bacsa, Henry S. La Pierre|2020|Dalton Trans.|49|14908|doi:10.1039/D0DT03472J
DOI: 10.6084/m9.figshare.13228979.v1
title: Tablas

description: SWAT outputs simulated from the regional parameters corresponding to period 1981-2016.
DOI: 10.5281/zenodo.4270344
title: Code and data for The seed germination spectrum of alpine plants: a global meta-analysis

description: Code and data for The seed germination spectrum of alpine plants: a global meta-analysis
DOI: 10.5281/zenodo.4270392
title: Augmented emission maps: 998 cc 74 kW Euro 6dT petrol engine

description: In order to enable the sharing of data the emission data for vehicles is standardized. The data exchange format contains all data that is applicable for a specific engine taxonomy code. This specific data set refers to the 998 cc 74 kW Euro 6dT petrol engine that has been applied in the Ford Fiesta, Ecosport, Transit Courier. The standardized emission map has a “.map.txt” extension and is also human readable. The files starts with metadata which contains information about: the engine taxonomy code, total driven kilometers over which the data was gathered, total time in hours over which the data was gathered, the number of vehicles which were tested to create the emission map, the DOI (Digital Object Identifier) reference, Which emission maps are available in the file. The DOI http://doi.org/10.5281/zenodo.4268034 refers to a updated meta-data document that provides the full description of the standardized emission map.
DOI: 10.5281/zenodo.4270391
title: Augmented emission maps: 998 cc 74 kW Euro 6dT petrol engine

description: In order to enable the sharing of data the emission data for vehicles is standardized. The data exchange format contains all data that is applicable for a specific engine taxonomy code. This specific data set refers to the 998 cc 74 kW Euro 6dT petrol engine that has been applied in the Ford Fiesta, Ecosport, Transit Courier. The standardized emission map has a “.map.txt” extension and is also human readable. The files starts with metadata which contains information about: the engine taxonomy code, total driven kilometers over which the data was gathered, total time in hours over which the data was gathered, the number of vehicles which were tested to create the emission map, the DOI (Digital Object Identifier) reference, Which emission maps are available in the file. The DOI http://doi.org/10.5281/zenodo.4268034 refers to a updated meta-data document that provides the full description of the standardized emission map.
DOI: 10.25345/c54f54
title: MassIVE MSV000086447 - Cathepsin B MSP-MS at pH 4.6 and pH 7.2
title: MSP-MS of Cathepsin B protease at acidic and neutral pH
DOI: 10.5517/ccdc.csd.cc250l4y
title: CCDC 1996559: Experimental Crystal Structure Determination

description: Related Article: Jakob B. Grinderslev, Young-Su Lee, Mark Paskevicius, Kasper T. Møller, Yigang Yan, Young Whan Cho, Torben R. Jensen|2020|Inorg.Chem.|59|11449|doi:10.1021/acs.inorgchem.0c01257
DOI: 10.5281/zenodo.4270438
title: Designing Computer Science Competency Statements: A Process and Curriculum Model for the 21st Century

description: Companion materials - Based on CS2013 Knowedge Areas - Competency Statements for CS Curricula: Produced by members of the ITiCSE 2020 Working Group Report: Designing Computer Science Competency Statements: A Process and Curriculum Model for the 21st Century Clear, A., Clear, T., Vichare, A., Charles, T., Frezza, S., Gutica, M., . . . Pitt, F. (2020). Designing Computer Science Competency Statements: A Process and Curriculum Model for the 21st Century [In Press]. In Proceedings of the 2020 ACM Conference on Innovation and Technology in Computer Science Education (pp. TBA): ACM.
DOI: 10.5281/zenodo.4270437
title: Designing Computer Science Competency Statements: A Process and Curriculum Model for the 21st Century

description: Companion materials - Based on CS2013 Knowedge Areas - Competency Statements for CS Curricula: Produced by members of the ITiCSE 2020 Working Group Report: Designing Computer Science Competency Statements: A Process and Curriculum Model for the 21st Century Clear, A., Clear, T., Vichare, A., Charles, T., Frezza, S., Gutica, M., . . . Pitt, F. (2020). Designing Computer Science Competency Statements: A Process and Curriculum Model for the 21st Century [In Press]. In Proceedings of the 2020 ACM Conference on Innovation and Technology in Computer Science Education (pp. TBA): ACM.
DOI: 10.5281/zenodo.4270332
title: Research Data Services in US Higher Education: A Web-Based Inventory - Raw Data

description: This dataset represents an inventory of research data services at 120 US colleges and universities. The data was collected using a systematic web content analysis process in late 2019. This dataset underlies the following report: Jane Radecki and Rebecca Springer, "Research Data Services in US Higher Education: A Web-Based Inventory," Ithaka S+R, Nov. 2020, https://doi.org/10.18665/sr.314397. We defined research data services as any concrete, programmatic offering intended to support researchers (including faculty, postdoctoral researchers, and graduate students) in working with data, and identified services within the following campus units: library, IT department/research computing, independent research centers and facilities, academic departments, medical school, business school, and other professional schools. We also recorded whether the institution offered local high performance computing facilities. For detailed definitions, exclusions, and data collection procedures, please see the report referenced above.
DOI: 10.5281/zenodo.4270331
title: Research Data Services in US Higher Education: A Web-Based Inventory - Raw Data

description: This dataset represents an inventory of research data services at 120 US colleges and universities. The data was collected using a systematic web content analysis process in late 2019. This dataset underlies the following report: Jane Radecki and Rebecca Springer, "Research Data Services in US Higher Education: A Web-Based Inventory," Ithaka S+R, Nov. 2020, https://doi.org/10.18665/sr.314397. We defined research data services as any concrete, programmatic offering intended to support researchers (including faculty, postdoctoral researchers, and graduate students) in working with data, and identified services within the following campus units: library, IT department/research computing, independent research centers and facilities, academic departments, medical school, business school, and other professional schools. We also recorded whether the institution offered local high performance computing facilities. For detailed definitions, exclusions, and data collection procedures, please see the report referenced above.
DOI: 10.6084/m9.figshare.12851947
title: Application of the Canadian Council of Ministers of the Environment Water Quality Index to assess and communicate monitoring data from coastal waters in Abu Dhabi, United Arab Emirates

description: The purpose of this research was to (1) identify an existing water quality index methodology that could be used in Abu Dhabi, United Arab Emirates, and (2) apply the water quality index to Abu Dhabi’s waters to communicate water quality conditions and track changes in conditions over time. The available monitoring data were reviewed to establish the types and frequencies of data available to populate an index, and a literature search was performed to identify and review existing water quality ind in use around the world. The Canadian Council of Ministers of the Environment Water Quality Index was selected and customized for use in Abu Dhabi. Using the Canadian Council of Ministers Water Quality Index, two different data aggregation methods were investigated for developing a single Emirate-wide Water Quality Index score. Finally, an alternative method for calculating indices when there are fewer than four parameters was investigated. Three Water Quality Indexs were developed for use in Abu Dhabi: Eutrophication Index, Microbial Index, and Heavy Metals (in sediment) Index. The Canadian Council of Ministers Water Quality Index methodology was found to be relatively easy to use and flexible as a building block for tailored indices, which are used to communicate marine water quality conditions to various stakeholders, including scientists, managers, policymakers, and the public.
DOI: 10.6084/m9.figshare.12851947.v1
title: Application of the Canadian Council of Ministers of the Environment Water Quality Index to assess and communicate monitoring data from coastal waters in Abu Dhabi, United Arab Emirates

description: The purpose of this research was to (1) identify an existing water quality index methodology that could be used in Abu Dhabi, United Arab Emirates, and (2) apply the water quality index to Abu Dhabi’s waters to communicate water quality conditions and track changes in conditions over time. The available monitoring data were reviewed to establish the types and frequencies of data available to populate an index, and a literature search was performed to identify and review existing water quality ind in use around the world. The Canadian Council of Ministers of the Environment Water Quality Index was selected and customized for use in Abu Dhabi. Using the Canadian Council of Ministers Water Quality Index, two different data aggregation methods were investigated for developing a single Emirate-wide Water Quality Index score. Finally, an alternative method for calculating indices when there are fewer than four parameters was investigated. Three Water Quality Indexs were developed for use in Abu Dhabi: Eutrophication Index, Microbial Index, and Heavy Metals (in sediment) Index. The Canadian Council of Ministers Water Quality Index methodology was found to be relatively easy to use and flexible as a building block for tailored indices, which are used to communicate marine water quality conditions to various stakeholders, including scientists, managers, policymakers, and the public.
DOI: 10.6084/m9.figshare.12782576.v2
title: Susceptibility to gingipains and transcriptomic response to P. gingivalis highlights the ribosome, hypothalamus, and cholinergic neurons

description: Porphyromonas gingivalis, a keystone species in the development of periodontal disease, is a suspected cause of Alzheimer’s disease. This bacterium is reliant on gingipain proteases, which cleave host proteins after arginine and lysine residues. To characterize gingipain susceptibility, we performed enrichment analyses of arginine and lysine proportion proteome-wide. Proteins in the SRP-dependent cotranslational protein targeting to membrane pathway were enriched for these residues and previously associated with periodontal and Alzheimer’s disease. These ribosomal genes are up-regulated in prefrontal cortex samples with detected P. gingivalis sequences. Other differentially expressed genes have been previously associated with dementia (ITM2B, MAPT, ZNF267, and DHX37). For an anatomical perspective, we characterized the expression of the P. gingivalis associated genes in the mouse and human brain. This analysis highlighted the hypothalamus, cholinergic neurons, and the basal forebrain. Our results suggest markers of neural P. gingivalis infection and link the gingipain and cholinergic hypotheses of Alzheimer’s disease.
DOI: 10.6084/m9.figshare.13182629
title: What martian meteorites reveal about the interior and surface of Mars

description: This supporting information contains the tables captions and the references included in Table S4. The four tables consists of compilation of data and include the list of currently classified of martian meteorites (as of August 2020). <b>Table S1.</b> List of martian meteorites. LREE enrichment indicated for shergottites.<b> </b><b>Table S2</b>. Number of meteorites per type for paired groups and unpaired meteorites<b> </b><b>Table S3.</b> Compilation of martian meteorite bulk rock compositions (if no data =not analyzed or below detection)<b> </b><b>Table S4.</b> Crystallization and ejection ages of martian meteorites (references in Tables S4) including techniques used for cosmic ray ejection ages (CRE).