cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29821949.v1
title: <b>Water mass specific genes dominate the Southern Ocean microbiome</b>

description: These data correspond to co-abundant groups of AGNOSTOS clusters (CAGs) catalogs, annotations and abundance matrices obtained from 218 metagenomes sampled during the Antarctic Circumpolar Expedition (ACE). The methodology and results obtained using these data are presented in the study entitled <b>Water mass specific genes dominate the Southern Ocean microbiome</b>, by Faure et al. (2025).Here is a description of each catalog/dataset :<b>Metadata_CTD_ACE_clean</b>: Environmental metadata for CTD samples.<b>Metadata_UDW_ACE_clean</b>: Environmental metadata for UDW samples.<b>Metadata_GeneMat_KNNimputed.rds</b>: Environmental data for metagenomics samples, after imputation of missing values.<b>CAGs_T60MAX_FL_RSquared10.txt</b>: Catalog of CAGs, linking every env-AGC (AGC with random forest R-squared above 10%, see the study for more details) from the small size fraction to its CAG.<b>CAGs_T60MAX_ATT_RSquared15.txt</b>: Catalog of CAGs, linking every env-AGC (AGC with random forest R-squared above 15%, see the study for more details) from the large size fraction to its CAG.<b>GM_CAGs_T60MAXGQ_transposed_NZVuniquecut20_FL_RSquared10.tsv.gz</b>: CAG-level matrix of coverage, focusing on CAGs from the free-living size fraction (0.2-3 and 0.2-40 µm). CAG = cluster of co-abundant AGNOSTOS gene clusters, please refer to Faure et al. for methods details on the clustering. In this matrix, each line corresponds to one sample and each column corresponds to on CAG, as identified in the Annotation matrix. Cells contain the sum of AGNOSTOS cluster-level coverage values for each CAG.<b>GM_CAGs_T60MAXGQ_transposed_NZVuniquecut20_ATT_RSquared15.tsv.gz</b>: CAG-level matrix of coverage, focusing on CAGs from the &gt;3µm size-fraction. In this matrix, each line corresponds to one sample and each column corresponds to on CAG, as identified in the Annotation matrix. Cells contain the sum of AGNOSTOS cluster-level coverage values for each CAG.<b>FuncEnrich.tar.gz</b>: Folder containing functional enrichment tests outputs for each CAG of interest discussed in Faure et al. (please refer to the study for more details on the methodology).<b>TaxoCags_UniRef90.tar.gz</b>: Folder containing taxonomic annotations of CAGs of interest discussed in Faure et al. based on Uniref90 using MMSeqs2, please refer to the study for more details on the methodology.<b>TaxoCags_GTDB.tar.gz</b>: Folder containing taxonomic annotations of CAGs of interest discussed in Faure et al. based on GTDB using Kraken2, please refer to the study for more details on the methodology.<b>Annotations_SAR11_CAGs.tar</b>: Folder containing annotations specific to the three SAR11-related CAGs displayed in our study, including FeGenie outputs.Other relevant files for our study can all be found on Zenodo under DOI 10.5281/zenodo.14181291<br>
DOI: 10.7910/dvn/bt0irx
title: Exploring Vulnerabilities: A mixed-method Transdisciplinary Study of Dengue and Diarrhea in Peru.

description: This dataset integrates socio-environmental factors to assess the vulnerability of dengue and diarrhea in Peru. It was constructed using open-access governmental data covering the period 2012–2016, including the Demographic and Family Health Survey (ENDES), the National Household Survey (ENAHO), Dengue and Diarrhea Prevalence (CDC Peru, Ministry of Health in Peru) and the Peruvian Interpolation of SENAMHI Climatological Observations (PISCO). The dataset supports the study “Exploring Vulnerabilities: A Mixed-Method Transdisciplinary Study of Dengue and Diarrhea in Peru”, submitted to The Journal of Climate Change and Health.
description: Details on data collection, preprocessing, refinement, and compilation are available at https://github.com/sciruiz/exploring-vulnerabilities-peru
 (see the data-analysis/ directory for additional documentation). Data collection and preprocessing were conducted by Isabel Ruiz, while data refinement and compilation were carried out by Leonardo Doig.
description: R, 4.4.3
DOI: 10.15468/dl.y4nje7
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is e0455781-2311-4b5b-8cc0-421d73e04f1b",
 "TaxonKey is Potamotrygon magdalenae"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047724-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.un7g9x
title: Occurrence Download

description: A dataset containing 6760 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Hemorrhois hippocrepis",
 "Year 1000-2025"
 ]
}

 The dataset includes 6760 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047722-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m8euvt
title: Occurrence Download

description: A dataset containing 2821 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Sweden, Denmark, Norway)",
 "Month is November",
 "OccurrenceStatus is Present",
 "TaxonKey is Mustelidae",
 "Year 2020-2025"
 ]
}

 The dataset includes 2821 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047723-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wyj6yq
title: Occurrence Download

description: A dataset containing 366 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceradenia capillaris"
 ]
}

 The dataset includes 366 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047725-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/bwmkje
title: Replication Data for: A Dual-Dimensional Framework for Assessing Young Learners’ Chinese as a Foreign Language Development through Communicative Tasks

description: A communicative task-based test with 379 beginner CFL learners across three countries.
DOI: 10.15468/dl.wt3sax
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((103.249 -0.823817, 103.17873 -0.829383, 103.110189 -0.8459449999999999, 103.045065 -0.873095, 102.98496 -0.910164, 102.931355 -0.95624, 102.885569 -1.01019, 102.848729 -1.070684, 102.821743 -1.136233, 102.805275 -1.205225, 102.799732 -1.275961, 102.805251 -1.346698, 102.821697 -1.415695, 102.848666 -1.481253, 102.885494 -1.541758, 102.931277 -1.595719, 102.984886 -1.641808, 103.045001 -1.678888, 103.110143 -1.706046, 103.178705 -1.722613, 103.249 -1.728182, 103.319295 -1.722613, 103.387857 -1.706046, 103.452999 -1.678888, 103.513114 -1.641808, 103.566723 -1.595719, 103.612506 -1.541758, 103.649334 -1.481253, 103.676303 -1.415695, 103.692749 -1.346698, 103.698268 -1.275961, 103.692725 -1.205225, 103.676257 -1.136233, 103.649271 -1.070684, 103.612431 -1.01019, 103.566645 -0.95624, 103.51304 -0.910164, 103.452935 -0.873095, 103.387811 -0.8459449999999999, 103.31927 -0.829383, 103.249 -0.823817))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 50 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047726-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25824/redu/stybq9
title: Otimização da receita no transporte ferroviário de passageiros: um estudo baseado em modelos de demanda independente e comportamental

description: Os dados utilizados nesta pesquisa são sensíveis, pois foram fornecidos por uma empresa canadense e, por esse motivo, não podem ser divulgados. Seu propósito foi avaliar a eficiência dos modelos matemáticos desenvolvidos ao longo do estudo. Trata-se de um conjunto histórico de vendas e reservas de diferentes tipos de bilhetes de trem, registrado ao longo de um determinado período. No contexto da pesquisa, essas vendas e reservas foram tratadas como demanda, servindo de base para a calibração, validação e testes das abordagens propostas. Para mais informações, contatar os responsáveis.
DOI: 10.5281/zenodo.17781051
title: Macrophages restrict tumor permissiveness to immune infiltration  by controlling local collagen topography  through a Tcf4-Collagen3 fibrotic axis

description: Here we provide the raw data of scRNAseq experiment and associated codes, 3D structures analysis raw data as well as all the code used for the image analysis of the project.
DOI: 10.6084/m9.figshare.30862499
title: Supplementary Material for: Deferred cord clamping in very preterm triplets and outcomes: A retrospective cohort study

description: Introduction: There is paucity of data with regards to benefits and harms associated with deferred cord clamping (DCC) in triplets. Objective was to compare outcomes of triplets following exposure of DCC in a national cohort admitted to NICU in Canada with a gestational age of &lt;33 weeks.
Methods: We conducted a retrospective, population-representative, cohort study of triplets born before 33 weeks’ gestation in Canadian NICU. Deferred cord clamping was defined as cord clamping conducted after 30 seconds of birth of neonate. Our primary outcome was survival without neurological injury or late onset sepsis and individual outcomes of neonatal survival, severe neurological injury and late onset sepsis. We utilized target trial emulation technique to analyze data considering discordant exposure, discordant outcomes and correlated nature of outcomes within triplet set. 
Results: Of the 226 sets of triplets included in the study, 100 sets had all 3 received DCC, 22 had 2/3 received DCC, 32 had 1/3 received DCC and 72 had none received DCC for a total of 376 neonates who received DCC and 302 did not receive DCC. There was no association of benefit or harm between DCC and any of the outcomes studied in any of the analyses. Univariate comparison of outcomes indicated higher receipt of inotropes and higher length of stay among those who did not receive DCC compared to other groups.
Discussion: In this retrospective cohort study, DCC was not associated with benefit or harm in very preterm triplets.
DOI: 10.6084/m9.figshare.30862499.v1
title: Supplementary Material for: Deferred cord clamping in very preterm triplets and outcomes: A retrospective cohort study

description: Introduction: There is paucity of data with regards to benefits and harms associated with deferred cord clamping (DCC) in triplets. Objective was to compare outcomes of triplets following exposure of DCC in a national cohort admitted to NICU in Canada with a gestational age of &lt;33 weeks.
Methods: We conducted a retrospective, population-representative, cohort study of triplets born before 33 weeks’ gestation in Canadian NICU. Deferred cord clamping was defined as cord clamping conducted after 30 seconds of birth of neonate. Our primary outcome was survival without neurological injury or late onset sepsis and individual outcomes of neonatal survival, severe neurological injury and late onset sepsis. We utilized target trial emulation technique to analyze data considering discordant exposure, discordant outcomes and correlated nature of outcomes within triplet set. 
Results: Of the 226 sets of triplets included in the study, 100 sets had all 3 received DCC, 22 had 2/3 received DCC, 32 had 1/3 received DCC and 72 had none received DCC for a total of 376 neonates who received DCC and 302 did not receive DCC. There was no association of benefit or harm between DCC and any of the outcomes studied in any of the analyses. Univariate comparison of outcomes indicated higher receipt of inotropes and higher length of stay among those who did not receive DCC compared to other groups.
Discussion: In this retrospective cohort study, DCC was not associated with benefit or harm in very preterm triplets.
DOI: 10.15468/dl.bjz4b6
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((103.815 -0.819817, 103.74473 -0.825383, 103.676189 -0.8419450000000001, 103.611065 -0.869095, 103.550961 -0.906164, 103.497356 -0.95224, 103.451569 -1.00619, 103.41473 -1.066684, 103.387743 -1.132234, 103.371275 -1.201225, 103.365732 -1.271961, 103.371251 -1.342698, 103.387697 -1.411695, 103.414666 -1.477253, 103.451495 -1.537758, 103.497277 -1.59172, 103.550886 -1.637808, 103.611002 -1.674888, 103.676143 -1.702046, 103.744706 -1.718613, 103.815 -1.724182, 103.885294 -1.718613, 103.953857 -1.702046, 104.018998 -1.674888, 104.079114 -1.637808, 104.132723 -1.59172, 104.178505 -1.537758, 104.215334 -1.477253, 104.242303 -1.411695, 104.258749 -1.342698, 104.264268 -1.271961, 104.258725 -1.201225, 104.242257 -1.132234, 104.21527 -1.066684, 104.178431 -1.00619, 104.132644 -0.95224, 104.079039 -0.906164, 104.018935 -0.869095, 103.953811 -0.8419450000000001, 103.88527 -0.825383, 103.815 -0.819817))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 55 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047728-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30862502
title: Supplementary Material for: Implementing low-intensity thrombolysis monitoring for patients with acute ischemic stroke in Latin America: insights from the OPTIMISTmain process evaluation

description: Introduction: The Optimal Post rtPA-IV Monitoring in Ischemic Stroke Trial (OPTIMISTmain) was an international, pragmatic, stepped-wedge, cluster- randomized, non-inferiority trial designed to compare a low-intensity protocol to standard high-intensity monitoring in patients with mild-to-moderate acute ischemic stroke treated with thrombolysis. The results showed safety, feasibility and non-inferiority efficacy of the low-intensity monitoring protocol supporting hospitals to consider adopting this approach in stroke care depending on local resources and circumstances. An embedded process evaluation was undertaken to explore factors influencing implementation and impact of the intervention in Latin America.

Methods: A convergent mixed-methods design was used to combine quantitative data and qualitative interviews with implementers and patients (or family members) as participating hospitals in Chile and Mexico. Purposive sampling ensured that a diverse range of experiences and discourses were captured, and normalization process theory (NPT) guided the identification of factors facilitating or hindering the incorporation of low-intensity monitoring. The analysis focused on key implementation outcomes.

Results: Low-intensity monitoring was widely accepted by clinicians who found it efficient, straightforward to implement, and potentially cost-saving for hospital services. Patients and families expressed acceptance, emphasizing the protocol´s potential to support continuous improvements in healthcare. Implementation challenges included staff turnover across shifts and hospital units, reliance on external contractors, and resistance to changing established care routines. Factors enabling successful implementation included strong team communication, dedicated stroke units, and ongoing feedback. Overall, the intervention demonstrated high acceptability, adoption and appropriateness, fidelity (median of 17 assessments in both countries), and sustainability. Feasibility outcomes were more variable, reflecting organizational challenges at the healthcare system level, such as for example initial resistance of nursing teams and high workloads in emergency services.

Conclusions: Implementation of a novel low-intensity monitoring protocol was well accepted by healthcare staff and offers potential benefits to patients with mild-to-moderate acute ischemic stroke admitted to hospitals in Latin America. Embedding a process evaluation into the main trial provided valuable insights into the challenges of implementing a complex intervention. A comprehensive understanding of the factors influencing organization change is critical to improving health outcomes.
DOI: 10.6084/m9.figshare.30862502.v1
title: Supplementary Material for: Implementing low-intensity thrombolysis monitoring for patients with acute ischemic stroke in Latin America: insights from the OPTIMISTmain process evaluation

description: Introduction: The Optimal Post rtPA-IV Monitoring in Ischemic Stroke Trial (OPTIMISTmain) was an international, pragmatic, stepped-wedge, cluster- randomized, non-inferiority trial designed to compare a low-intensity protocol to standard high-intensity monitoring in patients with mild-to-moderate acute ischemic stroke treated with thrombolysis. The results showed safety, feasibility and non-inferiority efficacy of the low-intensity monitoring protocol supporting hospitals to consider adopting this approach in stroke care depending on local resources and circumstances. An embedded process evaluation was undertaken to explore factors influencing implementation and impact of the intervention in Latin America.

Methods: A convergent mixed-methods design was used to combine quantitative data and qualitative interviews with implementers and patients (or family members) as participating hospitals in Chile and Mexico. Purposive sampling ensured that a diverse range of experiences and discourses were captured, and normalization process theory (NPT) guided the identification of factors facilitating or hindering the incorporation of low-intensity monitoring. The analysis focused on key implementation outcomes.

Results: Low-intensity monitoring was widely accepted by clinicians who found it efficient, straightforward to implement, and potentially cost-saving for hospital services. Patients and families expressed acceptance, emphasizing the protocol´s potential to support continuous improvements in healthcare. Implementation challenges included staff turnover across shifts and hospital units, reliance on external contractors, and resistance to changing established care routines. Factors enabling successful implementation included strong team communication, dedicated stroke units, and ongoing feedback. Overall, the intervention demonstrated high acceptability, adoption and appropriateness, fidelity (median of 17 assessments in both countries), and sustainability. Feasibility outcomes were more variable, reflecting organizational challenges at the healthcare system level, such as for example initial resistance of nursing teams and high workloads in emergency services.

Conclusions: Implementation of a novel low-intensity monitoring protocol was well accepted by healthcare staff and offers potential benefits to patients with mild-to-moderate acute ischemic stroke admitted to hospitals in Latin America. Embedding a process evaluation into the main trial provided valuable insights into the challenges of implementing a complex intervention. A comprehensive understanding of the factors influencing organization change is critical to improving health outcomes.
DOI: 10.15468/dl.stywk8
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bothrops brazili"
 ]
}

 The dataset includes 127 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047729-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14112829
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.w7t5pn
title: Occurrence Download

description: A dataset containing 1041 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Sweden, Norway, Denmark)",
 "Month is January",
 "OccurrenceStatus is Present",
 "TaxonKey is Mustelidae",
 "Year 2025-2025"
 ]
}

 The dataset includes 1041 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047730-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.66tt8k
title: Occurrence Download

description: A dataset containing 92690472 species occurrences available in GBIF matching the query:
(Query is too complex. Can be viewed on the landing page)

 The dataset includes 92690472 records from 14908 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047501-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gx3yug
title: Occurrence Download

description: A dataset containing 409 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "TaxonKey is Cryptobranchus alleganiensis (Sonnini de Manoncourt & Latreille, 1801)"
 ]
}

 The dataset includes 409 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005320-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6zf7ry
title: Occurrence Download

description: A dataset containing 37098 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 {
 "or" : [
 "Country is Jersey",
 "Country is France",
 "Country is Denmark",
 "Country is Austria",
 "Country is Italy",
 "Country is Germany",
 "Country is Spain",
 "Country is Croatia",
 "Country is Bulgaria",
 "Country is Sweden",
 "Country is Czechia",
 "Country is Romania",
 "Country is Slovakia",
 "Country is Hungary",
 "Country is Greece",
 "Country is Ukraine",
 "Country is Slovenia",
 "Country is Netherlands",
 "Country is Montenegro",
 "Country is Serbia",
 "Country is Bosnia and Herzegovina",
 "Country is Poland",
 "Country is Switzerland",
 "Country is Albania",
 "Country is North Macedonia",
 "Country is Finland"
 ]
 },
 "Geometry POLYGON((-32.52807 36.98510,28.35623 36.98510,28.35623 61.38028,-32.52807 61.38028,-32.52807 36.98510))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rana dalmatina Fitzinger, 1838"
 ]
}

 The dataset includes 37098 records from 373 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0272363-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.