cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive22481.20191129.4.1
title: Nannocystis exedens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22482.20191129.4.1
title: Herpetosiphon sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22483.20191129.4.1
title: Herpetosiphon sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22484.20191129.4.1
title: Myxococcus virescens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22485.20191129.4.1
title: Nannocystis exedens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.4441902
title: Data for bulk ATAC-seq normalization paper

description: This zipped file contains all public datasets used in our benchmark of bulk ATAC-seq normalization methods.
DOI: 10.13145/bacdive22486.20191129.4.1
title: Myxococcus virescens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22487.20191129.4.1
title: Myxococcus virescens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22488.20191129.4.1
title: Myxococcus virescens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22489.20191129.4.1
title: Nannocystis exedens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22490.20191129.4.1
title: Nannocystis exedens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22491.20191129.4.1
title: Herpetosiphon sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22492.20191129.4.1
title: Nannocystis exedens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22493.20191129.4.1
title: Nannocystis exedens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22494.20191129.4.1
title: Nannocystis exedens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22495.20191129.4.1
title: Nannocystis exedens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22496.20191129.4.1
title: Cystobacter armeniaca

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22497.20191129.4.1
title: Herpetosiphon sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22498.20191129.4.1
title: Herpetosiphon sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22499.20191129.4.1
title: Herpetosiphon sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22500.20191129.4.1
title: Herpetosiphon sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22501.20191129.4.1
title: Herpetosiphon sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22502.20191129.4.1
title: Herpetosiphon sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22503.20191129.4.1
title: Herpetosiphon sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22504.20191129.4.1
title: Polyangium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22505.20191129.4.1
title: Cystobacter armeniaca

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.6084/m9.figshare.13580423
title: Supplementary Material for: Week 2 Symptomatic Response with Vedolizumab as a Predictive Factor in Japanese Anti-TNFα-Naive Patients with Ulcerative Colitis: A post hoc Analysis of a Randomized, Placebo-Controlled Phase 3 Trial

description: <b><i>Background and Aim:</i></b> To evaluate the onset of symptomatic response with vedolizumab in patients with moderate-to-severe ulcerative colitis in Japan. <b><i>Methods:</i></b> Patients were randomized to receive vedolizumab 300 mg or placebo at Weeks 0, 2, and 6. Mayo subscores were analyzed in patients with baseline stool frequency (SF) ≥1 and rectal bleeding (RB) ≥1. In patients with baseline SF ≥2 and RB ≥1, the proportion who achieved SF ≤1 and RB = 0 was determined. <b><i>Results:</i></b> Patients were randomized to vedolizumab (<i>n</i> = 164) or placebo (<i>n</i> = 82). Decrease from baseline in mean SF subscore was greater with vedolizumab versus placebo from Week 2 (−6.6%; 95% confidence interval [CI], −16.2, 3.0), with a greater difference in anti-tumor necrosis factor (TNF)α-naive patients (vedolizumab vs. placebo, −13.2%; 95% CI, −29.7, 3.3). Mean percentage decrease from baseline RB subscore was numerically greater with vedolizumab versus placebo from Week 6 in anti-TNFα-naive patients (−10.7%; 95% CI, −33.0, 11.5). More patients in the anti-TNFα-naive subgroup achieved SF ≤1 and RB = 0 with vedolizumab versus placebo at Week 2 (14.8%; 95% CI, 2.5, 27.0) and Week 6 (20.3%; 95% CI, 4.4, 36.2). Patients with SF ≤1 and RB = 0 at Week 2 had higher clinical response, clinical remission, and mucosal healing rates at Week 10 than those without. <b><i>Conclusions:</i></b> Our results indicate that vedolizumab induces a rapid symptomatic response, particularly in anti-TNFα-naive patients, and suggest that early symptomatic improvement predicts treatment response at Week 10 (NCT02039505).
DOI: 10.5281/zenodo.4442070
title: Polyphasic characterization of carbapenem-resistant Klebsiella pneumoniae clinical isolates suggests vertical transmission of the blaKPC-3 gene

description: Optical DNA mapping (ODM) data related to the study, presented in figures 2-6 in the paper.
DOI: 10.5281/zenodo.4442069
title: Polyphasic characterization of carbapenem-resistant Klebsiella pneumoniae clinical isolates suggests vertical transmission of the blaKPC-3 gene

description: Optical DNA mapping (ODM) data related to the study, presented in figures 2-6 in the paper.
DOI: 10.6084/m9.figshare.13580450
title: Supplementary Material for: Training Thoracic Ultrasound Skills: A Randomized Controlled Trial of Simulation-Based Training versus Training on Healthy Volunteers

description: <b><i>Introduction:</i></b> As ultrasound becomes more accessible, the use of point-of-care ultrasound examinations performed by clinicians has increased. Sufficient theoretical and practical skills are prerequisites to integrate thoracic ultrasound into a clinical setting and to use it as supplement in the clinical decision-making. Recommendations on how to educate and train clinicians for these ultrasound examinations are debated, and simulation-based training may improve clinical performance. <b><i>Objectives:</i></b> The aim of this study was to explore the effect of simulation-based training in thoracic ultrasound compared to training on healthy volunteers. <b><i>Method:</i></b> A total of 66 physicians with no previous experience in thoracic ultrasound completed a training program and assessment of competences from November 2018 to May 2019. After a theoretical session in ultrasound physics, sonoanatomy, and thoracic ultrasound, the physicians were randomized into one of three groups for practical training: (1) simulation-based training, (2) training on a healthy volunteer, or (3) no training (control group). Primary outcome was difference in the clinical performance score after the training period. <b><i>Results:</i></b> Using a multiple comparison, ANOVA with Bonferroni correction for multiplicity, there was no statistical significant difference between the two trained groups’ performance score: 45.1 points versus 41.9 points (minimum 17 points, maximum 68 points; <i>p</i> = 0.38). The simulation-based training group scored significantly higher than the control group without hands-on training, 36.7 points (<i>p</i> = 0.009). <b><i>Conclusions:</i></b> The use of simulation-based training in thoracic ultrasound does not improve the clinical performance score compared to conventional training on healthy volunteers. As focused, thoracic ultrasound is a relatively uncomplicated practical procedure when taught; focus should mainly be on the theoretical part and the supervised clinical training in a curriculum. However, simulation can be used instead or as an add-on to training on simulated patients.
DOI: 10.6084/m9.figshare.13580450.v1
title: Supplementary Material for: Training Thoracic Ultrasound Skills: A Randomized Controlled Trial of Simulation-Based Training versus Training on Healthy Volunteers

description: <b><i>Introduction:</i></b> As ultrasound becomes more accessible, the use of point-of-care ultrasound examinations performed by clinicians has increased. Sufficient theoretical and practical skills are prerequisites to integrate thoracic ultrasound into a clinical setting and to use it as supplement in the clinical decision-making. Recommendations on how to educate and train clinicians for these ultrasound examinations are debated, and simulation-based training may improve clinical performance. <b><i>Objectives:</i></b> The aim of this study was to explore the effect of simulation-based training in thoracic ultrasound compared to training on healthy volunteers. <b><i>Method:</i></b> A total of 66 physicians with no previous experience in thoracic ultrasound completed a training program and assessment of competences from November 2018 to May 2019. After a theoretical session in ultrasound physics, sonoanatomy, and thoracic ultrasound, the physicians were randomized into one of three groups for practical training: (1) simulation-based training, (2) training on a healthy volunteer, or (3) no training (control group). Primary outcome was difference in the clinical performance score after the training period. <b><i>Results:</i></b> Using a multiple comparison, ANOVA with Bonferroni correction for multiplicity, there was no statistical significant difference between the two trained groups’ performance score: 45.1 points versus 41.9 points (minimum 17 points, maximum 68 points; <i>p</i> = 0.38). The simulation-based training group scored significantly higher than the control group without hands-on training, 36.7 points (<i>p</i> = 0.009). <b><i>Conclusions:</i></b> The use of simulation-based training in thoracic ultrasound does not improve the clinical performance score compared to conventional training on healthy volunteers. As focused, thoracic ultrasound is a relatively uncomplicated practical procedure when taught; focus should mainly be on the theoretical part and the supervised clinical training in a curriculum. However, simulation can be used instead or as an add-on to training on simulated patients.
DOI: 10.5281/zenodo.4441748
title: Source dataset of Figs.3 and S10 of "Higher-order topological semimetal in acoustic crystals"

description: <strong>Fig_3.xlsx</strong> is the source data from the third figure in the main text and <strong>Fig_S10.xlsx </strong>is the source data from the tenth figure in Supplementary Information of our submitted manuscript in Nature Materials (NM20062441C ) entitled <em>Higher-order topological semimetal in acoustic crystals. </em>by Qiang Wei, Xuewei Zhang, Weiyin Deng, Jiuyang Lu, Xueqin Huang, Mou Yan, Gang Chen, Zhengyou Liu, Suotang Jia.
DOI: 10.5281/zenodo.4441747
title: Source dataset of Figs.3 and S10 of "Higher-order topological semimetal in acoustic crystals"

description: <strong>Fig_3.xlsx</strong> is the source data from the third figure in the main text and <strong>Fig_S10.xlsx </strong>is the source data from the tenth figure in Supplementary Information of our submitted manuscript in Nature Materials (NM20062441C ) entitled <em>Higher-order topological semimetal in acoustic crystals. </em>by Qiang Wei, Xuewei Zhang, Weiyin Deng, Jiuyang Lu, Xueqin Huang, Mou Yan, Gang Chen, Zhengyou Liu, Suotang Jia.
DOI: 10.5281/zenodo.3973232
title: Dataset for Waves during Rosetta's close flyby of comet 67P

description: All data used in the article Ion acoustic waves near a comet nucleus: Rosetta observations at comet 67P/Churyumov-Gerasimenko by Herbert Gunell, Charlotte Goetz, Elias Odelstad, Arnaud Beth, Maria Hamrin, Pierre Henri, Fredrik L. Johansson, Hans Nilsson, and Gabriella Stenberg Wieser ( Annales Geophysicae, vol. 39, 53–68, 2021, doi: 10.5194/angeo-39-53-2021 ) can be found in this package together with the matlab m-files that were used to produce the figures in that article.
DOI: 10.5281/zenodo.3973231
title: Dataset for Waves during Rosetta's close flyby of comet 67P

description: All data used in the article Ion acoustic waves near a comet nucleus: Rosetta observations at comet 67P/Churyumov-Gerasimenko by Herbert Gunell, Charlotte Goetz, Elias Odelstad, Arnaud Beth, Maria Hamrin, Pierre Henri, Fredrik L. Johansson, Hans Nilsson, and Gabriella Stenberg Wieser ( Annales Geophysicae, vol. 39, 53–68, 2021, doi: 10.5194/angeo-39-53-2021 ) can be found in this package together with the matlab m-files that were used to produce the figures in that article.
DOI: 10.24377/ljmu.d.00000083
title: Perceptions of Climate Change education in and out of school: A study with a Year 12 cohort in one secondary school.

description: This data explores year 12 students’ perceptions on climate change based on the information they come into contact with. Due to COVID-19 methodology was limited, therefore using a remote questionnaire students were surveyed about where they find information on climate change and what how it makes them feel. The internet and social media appeared to be the most common platforms for finding information, though most students recognised the issue of "fake news" in relation to social media. Students tended to use negative emotive language to describe their feelings towards climate change highlighting the seriousness of the issue. The questionnaire also sought to determine whether students felt empowered by the information they read. Whilst there is some evidence of empowerment amongst some students, particularly in relation to leading localised personal change, the general feeling is one of hopelessness, most students feel there is little point in taking action against climate change when large corporations and governments, in their opinion are doing very little.
description: Remote questionnaire, cohort study, year 12 students
DOI: 10.6084/m9.figshare.13580486.v1
title: killer_features and label

description: The speech features extracted from the Killer corpus and corresponding label<br><br>
DOI: 10.15161/oar.it/73407
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.5281/zenodo.4408025
title: Replication Package: Assessing time-based and range-based strategies for commit assignment to releases

description: <strong>Abstract:</strong> Release is a ubiquitous concept in software development, referring to grouping multiple independent changes into a deliverable piece of software. Mining releases can help developers understand the software evolution at coarse grain, identify which features were delivered or bugs were fixed, and pinpoint who contributed on a given release. A typical initial step of release mining consists of identifying which commits compose a given release. We could find two main strategies used in the literature to perform this task: time-based and range-based. Some release mining works recognize that those strategies are subject to misclassifications but do not quantify the impact of such a threat. This paper analyzed 13,419 releases and 1,414,997 commits from 100 relevant open source projects hosted at GitHub to assess both strategies in terms of precision and recall. We observed that, in general, the range-based strategy has superior results than the time-based strategy. Nevertheless, even when the range-based strategy is in place, some releases still show misclassifications. Thus, our paper also discusses some situations in which each strategy degrades, potentially leading to bias on the mining results if not adequately known and avoided. <strong>Instructions:</strong> Visit https://github.com/gems-uff/release-mining for instructions about how to use this dataset. <strong>Files:</strong> The <em>repos.tgz</em> contains our project <em>corpus </em>comprising 1,414,997 releases from 100 relevant open source projects. The <em>repos.sha1</em> contains the sha1 checksum of <em>repos.tgz</em> <strong>Disclaimer:</strong> This replication package contains the source code of 100 relevant open source projects. Its purpose is to enable the replication of the study conducted in the paper "Assessing time-based and range-based strategies for commit assignment to releases." It is essential to check each project license before using the source code or any attached file for any other purposes besides replicating the study.
description: Visit https://github.com/gems-uff/release-mining for instructions about how to use this dataset.
DOI: 10.5281/zenodo.4408024
title: Replication Package: Assessing time-based and range-based strategies for commit assignment to releases

description: <strong>Abstract:</strong> Release is a ubiquitous concept in software development, referring to grouping multiple independent changes into a deliverable piece of software. Mining releases can help developers understand the software evolution at coarse grain, identify which features were delivered or bugs were fixed, and pinpoint who contributed on a given release. A typical initial step of release mining consists of identifying which commits compose a given release. We could find two main strategies used in the literature to perform this task: time-based and range-based. Some release mining works recognize that those strategies are subject to misclassifications but do not quantify the impact of such a threat. This paper analyzed 13,419 releases and 1,414,997 commits from 100 relevant open source projects hosted at GitHub to assess both strategies in terms of precision and recall. We observed that, in general, the range-based strategy has superior results than the time-based strategy. Nevertheless, even when the range-based strategy is in place, some releases still show misclassifications. Thus, our paper also discusses some situations in which each strategy degrades, potentially leading to bias on the mining results if not adequately known and avoided. <strong>Instructions:</strong> Visit https://github.com/gems-uff/release-mining for instructions about how to use this dataset. <strong>Files:</strong> The <em>repos.tgz</em> contains our project <em>corpus </em>comprising 1,414,997 releases from 100 relevant open source projects. The <em>repos.sha1</em> contains the sha1 checksum of <em>repos.tgz</em> <strong>Disclaimer:</strong> This replication package contains the source code of 100 relevant open source projects. Its purpose is to enable the replication of the study conducted in the paper "Assessing time-based and range-based strategies for commit assignment to releases." It is essential to check each project license before using the source code or any attached file for any other purposes besides replicating the study.
description: Visit https://github.com/gems-uff/release-mining for instructions about how to use this dataset.
DOI: 10.5281/zenodo.4442082
title: A Laboratory Forced-Oscillation Apparatus

description: In this file, we present supplementary materials for the paper titled <em><strong>"A Laboratory Forced-Oscillation Apparatus for Measurements of Elastic and Anelastic Properties of Rocks at Seismic Frequencies" </strong></em> by <strong>Vassily Mikhaltsevitch, Maxim Lebedev, Rafael Chavez, </strong><strong>Euripedes</strong> <strong>A. </strong><strong>Vargas Jr. and </strong><strong>Guilherme F. </strong><strong>Vasquez</strong>
DOI: 10.5281/zenodo.4442081
title: A Laboratory Forced-Oscillation Apparatus

description: In this file, we present supplementary materials for the paper titled <em><strong>"A Laboratory Forced-Oscillation Apparatus for Measurements of Elastic and Anelastic Properties of Rocks at Seismic Frequencies" </strong></em> by <strong>Vassily Mikhaltsevitch, Maxim Lebedev, Rafael Chavez, </strong><strong>Euripedes</strong> <strong>A. </strong><strong>Vargas Jr. and </strong><strong>Guilherme F. </strong><strong>Vasquez</strong>
DOI: 10.5281/zenodo.4442207
title: User Interaction Evaluation of 3D Handicraft Products Application

description: The dataset for analysis during the study for evaluation of 3D handicraft products application for smartphones usage
DOI: 10.5281/zenodo.4442206
title: User Interaction Evaluation of 3D Handicraft Products Application

description: The dataset for analysis during the study for evaluation of 3D handicraft products application for smartphones usage
DOI: 10.6084/m9.figshare.13580534.v1
title: Patterns of Epigenetic Diversity in Two Sympatric Fish Species: Genetic vs. Environmental Determinants - GENES 2021

description: Data for publication "Patterns of Epigenetic Diversity in Two Sympatric Fish Species: Genetic vs. Environmental Determinants" in GENES, 2021<br>
DOI: 10.6084/m9.figshare.11637777
title: DATA_Husk_Fragmentation_GS77.csv

description: Raw data for the husk fragmentation experiment - samples from GS 77<br>
DOI: 10.6084/m9.figshare.11637768
title: DATA_Husk_Fragmentation_GS65.csv

description: Raw data for the husk fragmentation experiment - samples from GS 65<br>