cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24564373.v4
title: Data from: Responses in the breeding parameters of the collared flycatcher to the changing climate

description: Global climate change involves various aspects of climate, including precipitation changes and declining surface wind speeds, but studies investigating biological responses have often focused on the impacts of rising temperatures. Additionally, related long-term studies on bird reproduction tend to focus on breeding onset, even though other aspects of breeding could also be sensitive to the diverse weather aspects. In this study, we aimed to explore how multiple aspects of breeding (e.g. breeding onset, hatching delay, breeding season length, clutch size) were associated with different weather components. We used an almost four-decade-long dataset to investigate the different aspects of breeding parameters of a collared flycatcher (<i>Ficedula albicollis</i>) population in the Carpathian Basin. Analyses revealed some considerable associations, for example, breeding seasons lengthened with the amount of daily precipitation, and clutch size increased with the number of cool days. Parallel or opposing changes in the correlated pairs of breeding and weather parameters were also observed. The phenological mismatch between prey availability and breeding time has notably increased in the last decade. Our results highlight the intricate interplay between climate change and the reproductive patterns of migratory birds, emphasizing the need for a holistic approach. They also underscore the potential threats posed by climate change to bird populations and the importance of adaptive responses to changing environmental conditions.
DOI: 10.6084/m9.figshare.24564373.v3
title: Data from: Responses in the breeding parameters of the collared flycatcher to the changing climate: a comprehensive view

description: Global climate change involves various aspects of climate, including precipitation changes and declining surface wind speeds, but studies investigating biological responses have mainly focused on the impacts of rising temperatures. Additionally, related studies on bird reproduction often focus on breeding onset, even though the sensitivity of a species can vary among different breeding components influenced by diverse weather aspects. We used an almost four-decade-long data set to investigate how the different aspects of breeding parameters of a collared flycatcher (<i>Ficedula albicollis</i>) population in the Carpathian Basin were associated with various local weather parameters. We also investigated the temporal trends of weather and breeding parameters. Higher temperatures and lower wind speeds were accompanied by earlier breeding onset. Breeding season length correlated positively with rains and negatively with the magnitude of within-season temperature rise. Hatching delay increased with cooler temperatures and rainier weather. Clutch size increased with the number of cool days. There were significant temporal trends in all breeding variables and, in parallel, the related weather parameters. For example, an advance in breeding onset and a decrease in wind speed were observed. The phenological mismatch between prey availability and breeding has notably increased in the last decade. Our results highlight the intricate interplay between climate change and the reproductive patterns of migratory birds, emphasizing the need for a holistic approach. It also underscores the potential threats posed by climate change to bird populations and the importance of adaptive responses to changing environmental conditions.
DOI: 10.6084/m9.figshare.13468159.v1
title: Additional file 8 of Comparative genomics of Klebsiella michiganensis BD177 and related members of Klebsiella sp. reveal the symbiotic relationship with Bactrocera dorsalis

description: Additional file 8 Table S6. Annotate results of the unique orthogroups of BD177 from comparative genomics by eggNOGmapper.
DOI: 10.6084/m9.figshare.16907389.v1
title: Additional file 2 of Mendelian randomization to evaluate the effect of plasma vitamin C levels on the risk of Alzheimer’s disease

description: Additional file 2: Supplementary Table 2. Pleiotropic association of 11 vitamin C genetic variants with human phenotypes at the genome wide significance level (P&lt;5.00E-08) using PhenoScanner
DOI: 10.6084/m9.figshare.9043046.v1
title: Additional file 1: of Expression analysis of Argonaute genes in maize (Zea mays L.) in response to abiotic stress

description: Table S1. Putative cis-elements of more than 5â bp identified in 17 ZmAGO genes using PlantCARE database. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.16907386.v1
title: Additional file 1 of Mendelian randomization to evaluate the effect of plasma vitamin C levels on the risk of Alzheimer’s disease

description: Additional file 1: Supplementary Table 1. Phenotype Descriptions and distributions in Cognitive Performance GWAS
DOI: 10.6084/m9.figshare.11665140
title: MOESM8 of Genome-wide identification, molecular evolution, and expression analysis provide new insights into the APETALA2/ethylene responsive factor (AP2/ERF) superfamily in Dimocarpus longan Lour

description: Additional file 8: Table S6. The alternative splicing events of the DlAP2/ERF superfamily detected in the EC under light quality treatments. a The alternative splicing events (alternative 3′ splice site acceptor) of the DlAP2/ERF superfamily detected in the EC under light quality treatments. b The alternative splicing events (5′ splice site donor) of the DlAP2/ERF superfamily detected in the EC under light quality treatments. c The alternative splicing events (intron retention) of the DlAP2/ERF superfamily detected in the EC under light quality treatments. d The alternative splicing events (exon skipping) of the DlAP2/ERF superfamily detected in the EC under light quality treatments.
DOI: 10.6084/m9.figshare.11665140.v1
title: MOESM8 of Genome-wide identification, molecular evolution, and expression analysis provide new insights into the APETALA2/ethylene responsive factor (AP2/ERF) superfamily in Dimocarpus longan Lour

description: Additional file 8: Table S6. The alternative splicing events of the DlAP2/ERF superfamily detected in the EC under light quality treatments. a The alternative splicing events (alternative 3′ splice site acceptor) of the DlAP2/ERF superfamily detected in the EC under light quality treatments. b The alternative splicing events (5′ splice site donor) of the DlAP2/ERF superfamily detected in the EC under light quality treatments. c The alternative splicing events (intron retention) of the DlAP2/ERF superfamily detected in the EC under light quality treatments. d The alternative splicing events (exon skipping) of the DlAP2/ERF superfamily detected in the EC under light quality treatments.
DOI: 10.6084/m9.figshare.24248082
title: Additional file 1 of Integrated bioinformatics analysis for the identification of idiopathic pulmonary fibrosis–related genes and potential therapeutic drugs

description: Additional file 1: Table S1. The analyze network results of 1640 DEGs. Table S2. GO terms of the 18 hub genes. Table S3. KEGG pathways of the 18 hub genes. Table S4. Target microRNAs of SPP1 based on five online miRNA databases. Table S5. Target microRNAs of VEGFA based on five online miRNA databases. Table S6. Target microRNAs of COL1A1 based on five online miRNA databases. Table S7. Target microRNAs of CAV1 based on five online miRNA databases. Table S8. Target microRNAs of PECAM1 based on five online miRNA databases. Table S9. Target microRNAs of BMP4 based on five online miRNA databases. Table S10. Target microRNAs of FYN based on five online miRNA databases. Table S11. Traditional Chinese medicine prediction results of COL1A1. Table S12. Traditional Chinese medicine prediction results of VEGFA. Table S13. Traditional Chinese medicine prediction results of SPP1.
DOI: 10.6084/m9.figshare.24248082.v1
title: Additional file 1 of Integrated bioinformatics analysis for the identification of idiopathic pulmonary fibrosis–related genes and potential therapeutic drugs

description: Additional file 1: Table S1. The analyze network results of 1640 DEGs. Table S2. GO terms of the 18 hub genes. Table S3. KEGG pathways of the 18 hub genes. Table S4. Target microRNAs of SPP1 based on five online miRNA databases. Table S5. Target microRNAs of VEGFA based on five online miRNA databases. Table S6. Target microRNAs of COL1A1 based on five online miRNA databases. Table S7. Target microRNAs of CAV1 based on five online miRNA databases. Table S8. Target microRNAs of PECAM1 based on five online miRNA databases. Table S9. Target microRNAs of BMP4 based on five online miRNA databases. Table S10. Target microRNAs of FYN based on five online miRNA databases. Table S11. Traditional Chinese medicine prediction results of COL1A1. Table S12. Traditional Chinese medicine prediction results of VEGFA. Table S13. Traditional Chinese medicine prediction results of SPP1.
DOI: 10.24376/rd.sgul.16803109
title: 'UK Lipoedema' cohort GWAS data 2021

description: Data from "Investigations of Clinical Characteristics and Genome Associations in the 'UK Lipoedema' Cohort"
Grigoriadis et al, Plos One
Post QC dataset (in plink format) on 130 GWAS cases from the discovery series.
Scripts used to produce this dataset and for its analysis can be found on GitHub (https://github.com/digrigor/SGUL_UK_Lipoedema_GWAS).
The full PLOS paper can be accessed at: https://doi.org/10.1371/journal.pone.0274867 or via the references below.  
<br>
DOI: 10.6084/m9.figshare.9042944
title: MOESM2 of Epigenome-wide association study of asthma and wheeze characterizes loci within HK1

description: Additional file 2: This file includes supplemental Tables (S1–S8)—Table S1. Comparison of cell-proportions and lung function variables across the Stage-1 (n = 91) and Stage-2 (n = 279) samples from the IOW F1 Sample. Table S2. Parameter estimates from logistic regression models performed in the Stage-2 sample (ns2 = 279), regressing current asthma status on DNA methylation M-values for all CpGs selected from the Stage-1 analysis. Table S3. Parameter estimates, standard errors, and p-values to compare the IOW F1 results to the ALSPAC replication results for CpGs that yielded an association within a 5% FDR in the Stage-2 analysis. Table S4. Comparing adjustment covariates between the IOW F1 sample and the ALSPAC sample; the within cohort comparisons are testing for differences in these variables between those with and without asthma. Table S5. Results from linear asthma EWAS in IOW F1 (n = 370), in which methylation beta values were regressed on asthma status, unadjusted for possible confounders. Table S6. Results from linear asthma EWAS in IOW F1 (n = 370), in which methylation beta values were regressed on asthmat status, adjusted for sex, CD4T cells, CD8T cells, Monocytes, Natural Killers, Eosinophils, and other Granulocytes. Table S7. CpGs that yielded unadjusted association (p &lt; 0.001) with current asthma in IOW F1 (unadjusted models) that were also identified as having unadjusted associations with current asthma and wheeze at age 7.5 and 16.5 years old in the previously published ALSPAC EWAS. Table S8. Associations between asthma and DNA methylation within the IOW cohort (unadjusted models) at the 14 CpGs that were identified as being asthma associated in a meta analysis of European children.
DOI: 10.6084/m9.figshare.13238054
title: FGF21/adiponectin ratio predicts new-onset diabetes (Supplementary material)

description: Supplementary materials
DOI: 10.6084/m9.figshare.7470887.v1
title: Additional file 2: of Comparative toxicogenomics of three insensitive munitions constituents 2,4-dinitroanisole, nitroguanidine and nitrotriazolone in the soil nematode Caenorhabditis elegans

description: Conversion of gene symbols to UniProt identifiers using the KEGG-UniProt linkage file. (XLSX 1258 kb)
DOI: 10.6084/m9.figshare.16907249.v1
title: Additional file 3 of Ferroptosis regulators, especially SQLE, play an important role in prognosis, progression and immune environment of breast cancer

description: Additional file 3: Supplementary Table 1. The differences in FR gene sets among five research
DOI: 10.24376/rd.sgul.16803109.v1
title: 'UK Lipoedema' cohort GWAS data 2021

description: Data from "Investigations of Clinical Characteristics and Genome Associations in the 'UK Lipoedema' Cohort"
Grigoriadis et al, Plos One
Post QC dataset (in plink format) on 130 GWAS cases from the discovery series.
Scripts used to produce this dataset and for its analysis can be found on GitHub (https://github.com/digrigor/SGUL_UK_Lipoedema_GWAS).
The full PLOS paper can be accessed at: https://doi.org/10.1371/journal.pone.0274867 or via the references below.  
<br>
DOI: 10.6084/m9.figshare.7470893
title: Additional file 3: of Comparative toxicogenomics of three insensitive munitions constituents 2,4-dinitroanisole, nitroguanidine and nitrotriazolone in the soil nematode Caenorhabditis elegans

description: UniProt genes mapping to computationally inferred C. elegans pathways in the Reactome database. (XLSX 508 kb)
DOI: 10.6084/m9.figshare.7470899
title: Additional file 4: of Comparative toxicogenomics of three insensitive munitions constituents 2,4-dinitroanisole, nitroguanidine and nitrotriazolone in the soil nematode Caenorhabditis elegans

description: Gene set file (i.e., gene mapping to KEGG-curated C. elegans pathways) used for gene set enrichment analysis (GSEA). (XLSX 31694 kb)
DOI: 10.6084/m9.figshare.7470398.v1
title: Additional file 6: of Systems biology analysis reveals new insights into invasive lung cancer

description: Table S3. The enriched pathways of the 19 core subnetworks. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.16907386
title: Additional file 1 of Mendelian randomization to evaluate the effect of plasma vitamin C levels on the risk of Alzheimer’s disease

description: Additional file 1: Supplementary Table 1. Phenotype Descriptions and distributions in Cognitive Performance GWAS
DOI: 10.6084/m9.figshare.7470920.v1
title: Additional file 9: of Integrated microRNA and mRNA analysis in the pathogenic filamentous fungus Trichophyton rubrum

description: Table S8. Annotation and category of the 137 differential expressed target genes. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.11665224
title: MOESM10 of Transcriptome analysis reveals key genes involved in the regulation of nicotine biosynthesis at early time points after topping in tobacco (Nicotiana tabacum L.)

description: Additional file 10: Table S5. Clustering TFs and up-regulated gene families in nicotine biosynthesis according to expression pattern after topping.
DOI: 10.6084/m9.figshare.11665224.v1
title: MOESM10 of Transcriptome analysis reveals key genes involved in the regulation of nicotine biosynthesis at early time points after topping in tobacco (Nicotiana tabacum L.)

description: Additional file 10: Table S5. Clustering TFs and up-regulated gene families in nicotine biosynthesis according to expression pattern after topping.
DOI: 10.25386/genetics.14810961
title: Supplemental Material for Comai et al., 2021

description: Dosage data for 1Mb bin of the potato genome in a family of dihaploids produced by pollinating 4x <i>Solanum tuberosum cv. Alca Tarma x 2x haploid inducers IpV101 or PL4. </i>
DOI: 10.25386/genetics.14810961.v1
title: Supplemental Material for Comai et al., 2021

description: Dosage data for 1Mb bin of the potato genome in a family of dihaploids produced by pollinating 4x <i>Solanum tuberosum cv. Alca Tarma x 2x haploid inducers IpV101 or PL4. </i>
DOI: 10.6084/m9.figshare.11665233
title: MOESM11 of Transcriptome analysis reveals key genes involved in the regulation of nicotine biosynthesis at early time points after topping in tobacco (Nicotiana tabacum L.)

description: Additional file 11: Table S6. DEGs involved in phytohormone signal transduction after topping.
DOI: 10.34740/kaggle/dsv/7609515
title: Contrastive Language Image Pretraining by openai
DOI: 10.6084/m9.figshare.11665233.v1
title: MOESM11 of Transcriptome analysis reveals key genes involved in the regulation of nicotine biosynthesis at early time points after topping in tobacco (Nicotiana tabacum L.)

description: Additional file 11: Table S6. DEGs involved in phytohormone signal transduction after topping.
DOI: 10.6084/m9.figshare.11665281
title: MOESM6 of Transcriptome analysis reveals key genes involved in the regulation of nicotine biosynthesis at early time points after topping in tobacco (Nicotiana tabacum L.)

description: Additional file 6: Table S1. Quality and mapping rates of RNA-Seq data.
DOI: 10.6084/m9.figshare.11665281.v1
title: MOESM6 of Transcriptome analysis reveals key genes involved in the regulation of nicotine biosynthesis at early time points after topping in tobacco (Nicotiana tabacum L.)

description: Additional file 6: Table S1. Quality and mapping rates of RNA-Seq data.
DOI: 10.6084/m9.figshare.11665293
title: MOESM7 of Transcriptome analysis reveals key genes involved in the regulation of nicotine biosynthesis at early time points after topping in tobacco (Nicotiana tabacum L.)

description: Additional file 7: Table S2. List of DEGs in roots after topping.
DOI: 10.6084/m9.figshare.11665293.v1
title: MOESM7 of Transcriptome analysis reveals key genes involved in the regulation of nicotine biosynthesis at early time points after topping in tobacco (Nicotiana tabacum L.)

description: Additional file 7: Table S2. List of DEGs in roots after topping.
DOI: 10.6084/m9.figshare.16907453
title: Additional file 2 of GFICLEE: ultrafast tree-based phylogenetic profile method inferring gene function at the genomic-wide level

description: Additional file 2: Supplementary Table S1. The datasets of the human genome with KEGG database, CORUM database and GO Database. Supplementary Table S2. The datasets of 10 different scale genomes.
DOI: 10.6084/m9.figshare.16907453.v1
title: Additional file 2 of GFICLEE: ultrafast tree-based phylogenetic profile method inferring gene function at the genomic-wide level

description: Additional file 2: Supplementary Table S1. The datasets of the human genome with KEGG database, CORUM database and GO Database. Supplementary Table S2. The datasets of 10 different scale genomes.
DOI: 10.15468/dl.ux8m5f
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Lithobius tylopus Latzel, 1882",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102491-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mpf4wa
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Neriene sulcata Blackwall, 1844",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102492-240626123714530/datasets/export for details.
DOI: 10.15468/dl.2zrd2b
title: Occurrence Download

description: A dataset listing the 1090026 species recorded in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset's 1090026 records were derived from 16458 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102458-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/23424
title: Chandra X-ray Observatory ObsId 23424

description: The superfluid properties of dense neutron star cores
DOI: 10.25574/23724
title: Chandra X-ray Observatory ObsId 23724

description: Quantifying the Rate of Nearby Dual AGN
DOI: 10.25574/23779
title: Chandra X-ray Observatory ObsId 23779

description: A CHANDRA LOOK AT VARIABILITY-SELECTED LOW-MASS AGN CANDIDATES
DOI: 10.25574/23899
title: Chandra X-ray Observatory ObsId 23899

description: Flows of hot Baryons in the Milky Way center: How are fountains & chimneys linked to the Galactic-scale outflow?
DOI: 10.25574/23900
title: Chandra X-ray Observatory ObsId 23900

description: Flows of hot Baryons in the Milky Way center: How are fountains & chimneys linked to the Galactic-scale outflow?
DOI: 10.25574/23902
title: Chandra X-ray Observatory ObsId 23902

description: Flows of hot Baryons in the Milky Way center: How are fountains & chimneys linked to the Galactic-scale outflow?
DOI: 10.25574/23904
title: Chandra X-ray Observatory ObsId 23904

description: Flows of hot Baryons in the Milky Way center: How are fountains & chimneys linked to the Galactic-scale outflow?
DOI: 10.25574/23905
title: Chandra X-ray Observatory ObsId 23905

description: Flows of hot Baryons in the Milky Way center: How are fountains & chimneys linked to the Galactic-scale outflow?
DOI: 10.25574/23906
title: Chandra X-ray Observatory ObsId 23906

description: Flows of hot Baryons in the Milky Way center: How are fountains & chimneys linked to the Galactic-scale outflow?
DOI: 10.25574/23907
title: Chandra X-ray Observatory ObsId 23907

description: Flows of hot Baryons in the Milky Way center: How are fountains & chimneys linked to the Galactic-scale outflow?
DOI: 10.25574/23908
title: Chandra X-ray Observatory ObsId 23908

description: Flows of hot Baryons in the Milky Way center: How are fountains & chimneys linked to the Galactic-scale outflow?
DOI: 10.25574/24074
title: Chandra X-ray Observatory ObsId 24074

description: Flows of hot Baryons in the Milky Way center: How are fountains & chimneys linked to the Galactic-scale outflow?
DOI: 10.25574/24196
title: Chandra X-ray Observatory ObsId 24196

description: Flows of hot Baryons in the Milky Way center: How are fountains & chimneys linked to the Galactic-scale outflow?
DOI: 10.25574/24197
title: Chandra X-ray Observatory ObsId 24197

description: Flows of hot Baryons in the Milky Way center: How are fountains & chimneys linked to the Galactic-scale outflow?
DOI: 10.15468/dl.henzsj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caryota mitis",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008360-250827131500795/datasets/export for details.
DOI: 10.25574/24284
title: Chandra X-ray Observatory ObsId 24284

description: The superfluid properties of dense neutron star cores
DOI: 10.15468/dl.yrtvua
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caryota mitis",
 "Country is Marshall Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008361-250827131500795/datasets/export for details.
DOI: 10.15468/dl.h7952c
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caryota mitis",
 "Country is Palau",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008362-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.