cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/y8nv3wk36k.1
title: SLR-RS-for-UML

description: This dataset includes the set of papers retrieved to perform a systematic literature review (SLR) on recommendation systems for Unified Modelling Language and vice versa. For reproducibility and reusability, all the data (raw data, list of primary studies, protocols, keywords, studypool, snowballing, RQs) are publicly available on https://data.mendeley.com/drafts/3dtd2vz2t7 with the DOI: 10.17632/3dtd2vz2t7.1.
Raw data includes stdypool(1), studypool(2), snowballing(1), snowballing(2) and setting sheets. We provide keywords+relatedworks, PICOC criterion, RQs, Keyword, SerachString, Inclusion-Exclusion criteria, QA&SA, Data Extraction, and Sources sheets for keywords and search strings.
DOI: 10.17632/y8nv3wk36k.2
title: SLR-RS-for-UML

description: This dataset includes the set of papers retrieved to perform a systematic literature review (SLR) on recommendation systems for Unified Modelling Language and vice versa. For reproducibility and reusability, all the data (raw data, list of primary studies, protocols, keywords, studypool, snowballing, RQs) are publicly available on https://data.mendeley.com/drafts/y8nv3wk36k with the DOI: 10.17632/y8nv3wk36k.2.
Raw data includes stdypool(1), studypool(2), snowballing(1), snowballing(2) and setting sheets. We provide keywords+relatedworks, PICOC criterion, RQs, Keyword, SerachString, Inclusion-Exclusion criteria, QA&SA, Data Extraction, and Sources sheets for keywords and search strings.
DOI: 10.6084/m9.figshare.24799173
title: Supplementary Material for: Systematic Review and Meta-Analysis of the Diagnostic Accuracy of the Sydney System for Reporting Lymph Node Fine-Needle Aspiration Biopsy in Diagnosing Malignancy

description: Introduction
To perform the first meta-analysis for assessment of the pooled risk of malignancy of each category of the Sydney system for reporting of lymph nodal aspirates along with evaluation of diagnostic accuracy. 
Methods
Pubmed/ MEDLINE and Embase were searched with the following keywords “(Lymph node) AND ("fine needle aspiration biopsy" OR FNAB) OR (International system OR Sydney system)” in the timeframe 2020 to August 04, 2023. The selected articles were assessed for risk of bias by the QUADAS-2 tool. The meta-analysis for sensitivity and specificity for each cut-off, that is, “Atypical considered positive,” “Suspicious of Malignancy considered positive,” and “Malignant considered positive” for the lesions was carried out after excluding the inadequate samples in each study. To assess the diagnostic accuracy, summary receiver operating characteristic (sROC) curves were constructed, and the diagnostic odds ratio (DOR) was pooled in both scenarios. 
Results
Nine studies, all of which were retrospective cross-sectional studies were evaluated with a total of 13205 cases. The sensitivity and specificity for the “Atypical and higher risk categories” considered as positive for malignancy were 97% (95% CI, 95%-99%), and 96% (95% CI, 91%-98%) respectively. The sensitivity and specificity for the “Suspicious for malignancy and higher risk categories” considered as positive for malignancy were 91% (95% CI, 85%-95%), and 99% (95% CI, 97%-100%) respectively. The sensitivity and specificity for the “Malignant” considered as positive for malignancy were 75% (95% CI, 65%-84%), and 100% (95% CI, 99%-100%) respectively. The pooled Area under the curve was 99-100% for each of the cut-offs. 
Conclusion
This meta-analysis highlights the accuracy of the Sydney system in reporting lymph node aspirates. It exhibits the significance of the “Suspicious” and “Malignant” categories in diagnosing malignancy and of the “ Benign” category in excluding malignancy.
DOI: 10.17632/7bgwhwsmt9.1
title: Supplemental Table S1

description: Data description per research station.
DOI: 10.6084/m9.figshare.24799179
title: Supplementary Material for: Systematic Review and Meta-Analysis of the Diagnostic Accuracy of the Sydney System for Reporting Lymph Node Fine-Needle Aspiration Biopsy in Diagnosing Malignancy

description: Introduction
To perform the first meta-analysis for assessment of the pooled risk of malignancy of each category of the Sydney system for reporting of lymph nodal aspirates along with evaluation of diagnostic accuracy. 
Methods
Pubmed/ MEDLINE and Embase were searched with the following keywords “(Lymph node) AND ("fine needle aspiration biopsy" OR FNAB) OR (International system OR Sydney system)” in the timeframe 2020 to August 04, 2023. The selected articles were assessed for risk of bias by the QUADAS-2 tool. The meta-analysis for sensitivity and specificity for each cut-off, that is, “Atypical considered positive,” “Suspicious of Malignancy considered positive,” and “Malignant considered positive” for the lesions was carried out after excluding the inadequate samples in each study. To assess the diagnostic accuracy, summary receiver operating characteristic (sROC) curves were constructed, and the diagnostic odds ratio (DOR) was pooled in both scenarios. 
Results
Nine studies, all of which were retrospective cross-sectional studies were evaluated with a total of 13205 cases. The sensitivity and specificity for the “Atypical and higher risk categories” considered as positive for malignancy were 97% (95% CI, 95%-99%), and 96% (95% CI, 91%-98%) respectively. The sensitivity and specificity for the “Suspicious for malignancy and higher risk categories” considered as positive for malignancy were 91% (95% CI, 85%-95%), and 99% (95% CI, 97%-100%) respectively. The sensitivity and specificity for the “Malignant” considered as positive for malignancy were 75% (95% CI, 65%-84%), and 100% (95% CI, 99%-100%) respectively. The pooled Area under the curve was 99-100% for each of the cut-offs. 
Conclusion
This meta-analysis highlights the accuracy of the Sydney system in reporting lymph node aspirates. It exhibits the significance of the “Suspicious” and “Malignant” categories in diagnosing malignancy and of the “ Benign” category in excluding malignancy.
DOI: 10.6084/m9.figshare.24799179.v1
title: Supplementary Material for: Systematic Review and Meta-Analysis of the Diagnostic Accuracy of the Sydney System for Reporting Lymph Node Fine-Needle Aspiration Biopsy in Diagnosing Malignancy

description: Introduction
To perform the first meta-analysis for assessment of the pooled risk of malignancy of each category of the Sydney system for reporting of lymph nodal aspirates along with evaluation of diagnostic accuracy. 
Methods
Pubmed/ MEDLINE and Embase were searched with the following keywords “(Lymph node) AND ("fine needle aspiration biopsy" OR FNAB) OR (International system OR Sydney system)” in the timeframe 2020 to August 04, 2023. The selected articles were assessed for risk of bias by the QUADAS-2 tool. The meta-analysis for sensitivity and specificity for each cut-off, that is, “Atypical considered positive,” “Suspicious of Malignancy considered positive,” and “Malignant considered positive” for the lesions was carried out after excluding the inadequate samples in each study. To assess the diagnostic accuracy, summary receiver operating characteristic (sROC) curves were constructed, and the diagnostic odds ratio (DOR) was pooled in both scenarios. 
Results
Nine studies, all of which were retrospective cross-sectional studies were evaluated with a total of 13205 cases. The sensitivity and specificity for the “Atypical and higher risk categories” considered as positive for malignancy were 97% (95% CI, 95%-99%), and 96% (95% CI, 91%-98%) respectively. The sensitivity and specificity for the “Suspicious for malignancy and higher risk categories” considered as positive for malignancy were 91% (95% CI, 85%-95%), and 99% (95% CI, 97%-100%) respectively. The sensitivity and specificity for the “Malignant” considered as positive for malignancy were 75% (95% CI, 65%-84%), and 100% (95% CI, 99%-100%) respectively. The pooled Area under the curve was 99-100% for each of the cut-offs. 
Conclusion
This meta-analysis highlights the accuracy of the Sydney system in reporting lymph node aspirates. It exhibits the significance of the “Suspicious” and “Malignant” categories in diagnosing malignancy and of the “ Benign” category in excluding malignancy.
DOI: 10.17632/x8wt79rtjf.1
title: Supplemental Table S2

description: Standard errors of genetic correlation estimates
DOI: 10.6084/m9.figshare.24799191
title: Supplementary Material for: Clinical characteristics of pathogenic ACAN variants and 3-year response to growth hormone treatment: real-world data

description: Introduction 
Heterozygous variants in the ACAN gene may underlie disproportionate short stature with characteristically accelerated bone age (BA) maturation and/or early-onset osteoarthritis (OA).
Methods
To describe phenotype, analyze genotype-phenotype correlations and assess the response of growth hormone (GH) treatment in children with a heterozygous ACAN variant. Thirty-six subjects (23 boys, 13 girls) with ACAN-deficiency and treated for ≥1 year with GH were identified in the Dutch National Registry of GH treatment in children.
Results
We identified 25 different heterozygous ACAN variants in 36 subjects. Median (IQR) height SDS at start of GH was -2.6 SDS (-3.2 to -2.2). Characteristic features such as disproportion, advanced BA, early-onset OA and dysmorphic features like midface hypoplasia and brachydactyly were present in the majority of children, but in ~20% no specific features were reported. Subjects with a truncating ACAN variant had a shorter height SDS compared to subjects with a non-truncating variant (-2.8 SDS and -2.1 SDS respectively, P=0.002). After 3 years of GH, height gain SDS in prepubertal children was 1.0 SDS (0.9 to 1.4). In pubertal children, height SDS remained relatively stable. 
Conclusion
The phenotype of subjects with pathogenic heterozygous ACAN variants is highly variable and genetic testing for ACAN-deficiency should be considered in any child with significant short stature, even in the absence of disproportion, specific dysmorphic features or bone-age advancement. Furthermore, children with ACAN-deficiency may benefit from GH with a modest but significant response, which is sustained during 3 years of treatment.
DOI: 10.6084/m9.figshare.24799191.v1
title: Supplementary Material for: Clinical characteristics of pathogenic ACAN variants and 3-year response to growth hormone treatment: real-world data

description: Introduction 
Heterozygous variants in the ACAN gene may underlie disproportionate short stature with characteristically accelerated bone age (BA) maturation and/or early-onset osteoarthritis (OA).
Methods
To describe phenotype, analyze genotype-phenotype correlations and assess the response of growth hormone (GH) treatment in children with a heterozygous ACAN variant. Thirty-six subjects (23 boys, 13 girls) with ACAN-deficiency and treated for ≥1 year with GH were identified in the Dutch National Registry of GH treatment in children.
Results
We identified 25 different heterozygous ACAN variants in 36 subjects. Median (IQR) height SDS at start of GH was -2.6 SDS (-3.2 to -2.2). Characteristic features such as disproportion, advanced BA, early-onset OA and dysmorphic features like midface hypoplasia and brachydactyly were present in the majority of children, but in ~20% no specific features were reported. Subjects with a truncating ACAN variant had a shorter height SDS compared to subjects with a non-truncating variant (-2.8 SDS and -2.1 SDS respectively, P=0.002). After 3 years of GH, height gain SDS in prepubertal children was 1.0 SDS (0.9 to 1.4). In pubertal children, height SDS remained relatively stable. 
Conclusion
The phenotype of subjects with pathogenic heterozygous ACAN variants is highly variable and genetic testing for ACAN-deficiency should be considered in any child with significant short stature, even in the absence of disproportion, specific dysmorphic features or bone-age advancement. Furthermore, children with ACAN-deficiency may benefit from GH with a modest but significant response, which is sustained during 3 years of treatment.
DOI: 10.17632/7hz22drzwz.1
title: Immigrant-led foreign direct investment and the dynamics of cross-border capital allocation

description: This study examines the impact of immigration on Foreign Direct Investment in 21 middle-income African countries between 1990 and 2021. Employing a dynamic panel model with heteroscedasticity-based identification, this study reveals that an increased stock of prior Foreign Direct Investment inflows as well as a larger share of immigrants focused on Foreign Direct Investment significantly boosts the attractiveness of these nations to potential foreign investors. These findings align with the literature on agglomeration effects and reinforce the notion that initial immigrant investors are critical in stimDataulating future Foreign Direct Investment. The results revealed a negative correlation between the overall immigration rate and Foreign Direct Investment, suggesting possible substitution effects. However, the interaction of past Foreign Direct Investment with immigration yields a positive and substantial coefficient, indicating that immigration amplifies Foreign Direct Investment, especially when immigrants are directly engaged in investment activities. From a policy perspective, these insights highlight the need to facilitate the entry of skilled and entrepreneurial immigrants. This calls for the implementation of immigration policies, advocating the prompt admission of immigrants while upholding ethical standards, fostering social equity, and protecting fundamental human rights. This approach aligns with ethical imperatives and serves as a strategic mechanism to enhance the economic landscape through targeted and beneficial immigration practices.
DOI: 10.17632/y4yr9pf8kn.1
title: Data for Quantification of Shortwave Surface Albedo Feedback using a Neural Network Approach

description: This dataset includes the training and testing of the Neural Network models proposed in the article titled "Quantification of Shortwave Surface Albedo Feedback using a Neural Network Approach". It comprises two folders: one with the training and testing of the heuristic NN model and the other containing the training and testing of the global NN model. The necessary datasets can be found in the 'data/' folder, as well as the NN model used in the article. The Python file 'my_functions.py' contains the necessary developed functions. For more information please refer to our article.
DOI: 10.17632/kws6jscw5h.1
title: AAP Balance Sheet

description: Until Jochen's arrival, apparel was an after-thought for the company. Apparel was run by a former GM of the parts business. Jochen recruited Erika Boullard from Nike to join H-D and lead the apparel business. Our industry checks have all uniformly stated that the quality and design of the apparel has made a generational leap in the past several years, especially for female riders. When Jochen first joined the company, he observed that there were vintage H-D gear selling on eBay for thousands of dollars, but the current merchandise for sale was not very impressive. While apparel is only $287M revenue in 2023, the contribution margins on apparel are likely ~50% vs. 29% on motorcycles. Apparel revenues were declining prior to 2020, but have since grown at 20%+ rates. Anecdotally, news reports from H-D's 120th anniversary bash in Milwaukee noted long lines for H-D merchandise and suggested replacing some of the bars with merch stores for next year's event. 

Licensing is in an even worse state, generating only $33M of revenue (100% margin) in 2023, most of it from a 3rd party t-shirt manufacturer. Ferrari's licensing revenue is 10x larger than H-D. While at Puma, Jochan struck a lucrative licensing deal with Ferrari so this is again an easy opportunity to generate incremental profits. In 2023, H-D announcing a licensing deal with Hero Motorcycles in India. Hero designed and manufactured a $3k ASP motorcycle with the H-D logo, and this bike sold out with 25k pre-orders within weeks of launch. We estimate just this one deal to have generated a recurring stream of $8M/year (assuming 40k/year units).

We believe apparel and licensing business could double over the next 5 years and increase from $300 to $600M revenue. Assuming 50% incremental margins on apparel and 100% incremental margins on licensing, this would add ~$200M to operating income or ~$1.00 of EPS after tax.

Motorcycle unit sales
H-D unit sales have declined from 262k to 187k 2016-2023. We believe most of this decline was intentional, as laid out in management presentations over the last several years. H-D exited 60+ global markets where it had very low market share. H-D also discontinued 25% of it's model line-up, eliminating lower priced bikes where it lost money on every bike. It shrunk the number of platforms from 5 to 2. The result was a significant increase in average revenue per motorcycle (excluding parts/apparel/etc) from $16k in 2020 to $20k in 2023. It also meant that the bike business (excludings parts/etc) went from losing money on average bike sold to making a 29% gross margin. Of course that meant giving up units as competitors took over in markets or model categories where H-D no longer offered a product. 

While the stock trades on units/market share in the near term, motorcycle revenues have been growing through Covid and guidance expects it to grow again in 2023. We believe the leading indicator of H-D unit sales will be driven by demographics and appeal of the brand.
DOI: 10.17632/7bj32j5dhj.1
title: 16S sequencing of PBS and ABX treated mice before and after MNV infection

description: This data set includes the trimmed fastq files after 16S sequencing of DNA extracted from murine stool. Mice were treated with PBS, a broad-spectrum (neomycin, ampicillin, metronidazole, vancomycin) or anearobe targeting (metronidazole and clindamycin) for 1 week prior to infection with murine norovirus or mock inoculum. Fecal samples were collected prior to viral infection and at 24 hrs post infection.
DOI: 10.25403/upresearchdata.24754485
title: Growth, neurodevelopmental outcomes and micronutrient intake in 18-month-old South African children with maternal HIV exposure and placental insufficiency: the UmbiGodisa cross-sectional study

description: We assessed and compared growth and neurodevelopmental outcomes and micronutrient intakes in children who are HIV-exposed-and-uninfected (CHEU) and children who are HIV-unexposed-and-uninfected (CHUU) born with or without IUGR. At 18 months of age, 264 mother-child pairs were followed-up and categorized into four subgroups: CHUU with normal UmA-RI (CHUU/N-RI), CHEU with normal UmA-RI (CHEU/N-RI), CHUU with abnormal UmA-RI (CHUU/AbN-RI) and CHEU with abnormal UmA-RI (CHEU/AbN-RI). Anthropometry measurements and z-scores were performed and computed according to standard procedures. International Guide for Monitoring Child Development (GMCD) was used for developmental screening and Bayley-III to test for cognitive, language and motor development at the corrected age.
DOI: 10.23708/6qsn6q
title: Dataset collected during a 70 day column experiment testing the impact of organic amendments (compost vermicompost) added to a tropical sandy-loam on maize (Zea mays) development and yield.

description: Plant (maize) and soil characteristics were monitored daily for 70 days and at harvest (DAP). Daily measures consisted in amount of irrigation water and soil matric potential in each of the 30 columns, and in plant height, number of leaves and total leaves length. At harvesting it consisted in dry weight of flowers, leaves, stem, corn ear and roots. For the soil int consisted in bulk density.
DOI: 10.17632/tz2jyv6y3d.1
title: Plasticity of growth laws tunes resource allocation strategies in bacteria

description: Data files for the main text figures, associated with the work titled :Plasticity of growth laws tunes resource allocation strategies in bacteria
DOI: 10.17632/yng629kg7t.1
title: Datasets for "Short-term withdrawal drives hepatic oxidative stress while a short-term high-sugar/high-fat diet does not."

description: This data was used in the manuscript entitled "Short-term withdrawal drives hepatic oxidative stress while a short-term high-sugar/high-fat diet does not." submitted to publication. Until acceptance, only metadata will be available.

Researcher in charge: Debora Estadella
Researcher in charge of data collection: Breno Picin Casagrande
Date of data collection: 01/04/2018 - 1/12/2019
Financial support: CAPES - Brazil, FAPESP (2017/25420-3), CNPq
DOI: 10.17632/yng629kg7t.2
title: Datasets for "Obesogenic diet withdrawal as a second hit on hepatic oxidative and cytotoxic/mutagenic parameters."

description: This data was used in the manuscript entitled "Obesogenic diet withdrawal as a second hit on hepatic oxidative and cytotoxic/mutagenic parameters." submitted to publication. Until acceptance, only metadata will be available.
.
Researcher in charge: Debora Estadella
Researcher in charge of data collection: Breno Picin Casagrande
Date of data collection: 01/04/2018 - 1/12/2019
Financial support: CAPES - Brazil, FAPESP (2017/25420-3), CNPq
DOI: 10.18112/openneuro.ds004495.v1.0.0
title: Episodic and Semantic Memory fMRI Dataset
DOI: 10.34740/kaggle/dsv/7192117
title: 2021 World Population (updated daily)
DOI: 10.34740/kaggle/dsv/7192128
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.6084/m9.figshare.24799200
title: Simulation

description: Simulation
DOI: 10.5281/zenodo.10362516
title: Lund Bladder Cancer Group - Lund Taxonomy 2023 Classifier - Training Data

description: Raw and processed training data used for the Lund Taxonomy 2023 gene expression classifier for urothelial carcinoma.
The dataset contains the raw .CEL files for 3 Affymetrix Gene 1.0 ST cohorts: Lund2017 (n=307, GSE83586), Lund2020 (n=173, GSE128959), Lund2022 (n=310, 117 from GSE169455, 37 from GSE222073, and 156 previously unpublished samples). Code examples for RMA and SCAN.UPC normalization for Affymetrix Gene, Exon, and HTA2 arrays used in the study is included. Hybridization batch information is available for each array cohort.
The dataset contains Kallisto and Salmon transcript quantification files for 265 RNA-sequenced tumors and the tx2gene file+code for transcript to gene summarization using txImport
DOI: 10.5281/zenodo.10370909
title: COMPARATIVE ANALYSIS OF INTONATION OF STATEMENTS IN ENGLISH AND UZBEK
DOI: 10.5281/zenodo.10370910
title: COMPARATIVE ANALYSIS OF INTONATION OF STATEMENTS IN ENGLISH AND UZBEK
DOI: 10.5281/zenodo.10362517
title: Lund Bladder Cancer Group - Lund Taxonomy 2023 Classifier - Training Data

description: Raw and processed training data used for the Lund Taxonomy 2023 gene expression classifier for urothelial carcinoma.
The dataset contains the raw .CEL files for 3 Affymetrix Gene 1.0 ST cohorts: Lund2017 (n=307, GSE83586), Lund2020 (n=173, GSE128959), Lund2022 (n=310, 117 from GSE169455, 37 from GSE222073, and 156 previously unpublished samples). Code examples for RMA and SCAN.UPC normalization for Affymetrix Gene, Exon, and HTA2 arrays used in the study is included. Hybridization batch information is available for each array cohort.
The dataset contains Kallisto and Salmon transcript quantification files for 265 RNA-sequenced tumors and the tx2gene file+code for transcript to gene summarization using txImport
DOI: 10.6084/m9.figshare.24799188.v1
title: Supplementary Data

description: Supplementary Data for '<b>Insights into deuterostome evolution from the biphasic transcriptional programme of hemichordates</b>'
DOI: 10.5281/zenodo.10370927
title: Drought exacerbates dryland soil carbon loss from inorganic carbon under warming

description: Soil properties data for the study entitled "Drought exacerbates dryland soil carbon loss from inorganic carbon under warming".
DOI: 10.5281/zenodo.10369530
title: Drought exacerbates dryland soil carbon loss from inorganic carbon under warming

description: Soil properties data for the study entitled "Drought exacerbates dryland soil carbon loss from inorganic carbon under warming".