cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/kve-8dt-6ya
title: Lindholmiola lens (A. Férussac, 1832)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s2g-jxg-lt3
title: Trochulus hispidus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rzh-s81-5nl
title: Cornu aspersum (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e3w-1ke-2ck
title: Arcidae Lamarck, 1809

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ypk-btc-1b8
title: Arcidae Lamarck, 1809

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zv0-64g-a6r
title: Pyrenaearia carascalensis (Michaud, 1831)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.1594/pangaea.963452
title: Calcareous nannofossil biostratigraphy of IODP Site 378-U1553

description: *shipboard data, Röhl, U., Thomas, D.J., Childress, L.B., Anagnostou, E., Ausín, B., Borba Dias, B., Boscolo-Galazzo, F., Brzelinski, S., Dunlea, A.G., George, S.C., Haynes, L.L., Hendy, I.L., Jones, H.L., Khanolkar, S.S., Kitch, G.D., Lee, H., Raffi, I., Reis, A.J., Sheward, R.M., Sibert, E., Tanaka, E., Wilkens, R., Yasukawa, K., Yuan, W., Zhang, Q., Zhang, Y., Drury, A.J., Crouch, E.M., and Hollis, C.J., 2022. Site U1553, in: Röhl, U., Thomas, D.J., Childress, L.B., and the Expedition 378 Scientists, South Pacific Paleogene Climate. Proceedings of the International Ocean Discovery Program, 378: College Station, TX (International Ocean Discovery Program). https://doi.org/10.14379/iodp.proc.378.103.2022bT=Top occurenceTc= Top common occurenceB= Base occurenceHo= Highest observed occurence
DOI: 10.3535/8m9-ksz-xl3
title: Zingis whytei (E. A. Smith, 1894)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w4b-az5-z8s
title: Cornu aspersum (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9lg-8wa-sqb
title: Ensis Schumacher, 1817

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ljh-dwc-kde
title: Planispira H. Beck, 1837

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.1594/pangaea.963457
title: Hyperthermals and the bulk sediment δ13C tie points from IODP Site U1553 correlated to records of ODP Site 207-1258 and 208-126

description: Age model. Hyperthermals (Hyp) and the bulk sediment δ13C records from ODP Site1258 and 1262 were correlated to our record. This table provides the tie points in order to generate the age model.Hyp=Hyperthermalδ13C corr= correlation
DOI: 10.3535/avk-n2n-aeg
title: Chilostoma Fitzinger, 1833

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e4n-tdg-va2
title: Thapsia marsabitensis (Preston, 1914)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.1594/pangaea.966214
title: Calcareous nannofossil abundance of IODP Site 378-U1553

description: #999 means cf: taxonomic note: 'cf.' (= 'confer', in Latin: compare)
DOI: 10.3535/g81-rat-44r
title: Ariophantidae Godwin-Austen, 1883

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m5x-ksd-56c
title: Xeroplexa intersecta (Poiret, 1801)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.1594/pangaea.963447
title: d13C and d18O stable isotope records of IODP Site 378-U1553
DOI: 10.3535/3br-stw-c7b
title: Hemiplecta humphreysiana (I. Lea, 1840)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6g8-vrw-jvc
title: Oxychilus mortilleti (L. Pfeiffer, 1859)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.1594/pangaea.977779
title: Crack paths in EPSG:3413 derived from high-resolution satellite remote sensing imagery

description: The dataset contains GNSS observations of glacier motion, airborne radio echo sounding of englacial channels, airborne laser scanner data of supraglacial lake ground topography and supraglacial lake outlines from satellite remote sensing data of 79°N Glacier. The GNSS observations are from summer 2017 and 2019. The radar sounding of englacial channels was conducted in 2016, 2018 and 2021. The airborne laser scanner data was obtained in summer 2021. The supraglacial lake outlines are from 2005, 2012, 2015, 2019, 2020, 2022 and 2023. The data covers a supraglacial lake at 24.58969°W,79.14370°N. The purpose of data acquisition was to study supraglacial lake drainage mechanisms.
DOI: 10.3535/3r1-tbl-4bq
title: Vexiguraleus hispidulus (Bellardi, 1847)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/llt-73k-alf
title: Crepidula plana Say, 1822

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.1594/pangaea.974775
title: Ultra-wide band radar data of englacial channels in 2016, 2018 and 2021

description: The dataset contains GNSS observations of glacier motion, airborne radio echo sounding of englacial channels, airborne laser scanner data of supraglacial lake ground topography and supraglacial lake outlines from satellite remote sensing data of 79°N Glacier. The GNSS observations are from summer 2017 and 2019. The radar sounding of englacial channels was conducted in 2016, 2018 and 2021. The airborne laser scanner data was obtained in summer 2021. The supraglacial lake outlines are from 2005, 2012, 2015, 2019, 2020, 2022 and 2023. The data covers a supraglacial lake at 24.58969°W,79.14370°N. The purpose of data acquisition was to study supraglacial lake drainage mechanisms.
DOI: 10.1594/pangaea.974776
title: Surface elevation from airborne laser scanning referenced to the EGM2008 geoid across the supraglacial lake

description: The dataset contains GNSS observations of glacier motion, airborne radio echo sounding of englacial channels, airborne laser scanner data of supraglacial lake ground topography and supraglacial lake outlines from satellite remote sensing data of 79°N Glacier. The GNSS observations are from summer 2017 and 2019. The radar sounding of englacial channels was conducted in 2016, 2018 and 2021. The airborne laser scanner data was obtained in summer 2021. The supraglacial lake outlines are from 2005, 2012, 2015, 2019, 2020, 2022 and 2023. The data covers a supraglacial lake at 24.58969°W,79.14370°N. The purpose of data acquisition was to study supraglacial lake drainage mechanisms.
DOI: 10.1594/pangaea.974779
title: Supraglacial lake outlines at maximum filling for the years 2005, 2012, 2015, 2019, 2020, 2022 and 2023 in EPSG:3413 derived from satellite remote sensing imagery

description: The dataset contains GNSS observations of glacier motion, airborne radio echo sounding of englacial channels, airborne laser scanner data of supraglacial lake ground topography and supraglacial lake outlines from satellite remote sensing data of 79°N Glacier. The GNSS observations are from summer 2017 and 2019. The radar sounding of englacial channels was conducted in 2016, 2018 and 2021. The airborne laser scanner data was obtained in summer 2021. The supraglacial lake outlines are from 2005, 2012, 2015, 2019, 2020, 2022 and 2023. The data covers a supraglacial lake at 24.58969°W,79.14370°N. The purpose of data acquisition was to study supraglacial lake drainage mechanisms.
DOI: 10.3535/zy7-kp6-syz
title: Trochulus hispidus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e31-xg2-p81
title: Aegopinella Lindholm, 1927

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g3b-f77-v1t
title: Atlanta peronii Lesueur, 1817

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2yz-w50-828
title: Ariophantidae Godwin-Austen, 1883

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c4e-a47-fjh
title: Canefriula ridibunda (Tapparone Canefri, 1883)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j39-1pa-e7q
title: Diastole exposita (Mousson, 1873)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.1594/pangaea.974809
title: Slow drift data of turbulent large-scale structures in axisymmetric co-rotating Taylor–Couette flow

description: Here we present data sets from direct numerical simulations of axisymmetric Taylor–Couette flow in the co-rotating regime that reveal a transition to spatio-temporal chaos as the system size increases. Beyond this transition, Taylor rolls suddenly undergo erratic drifts evolving on a very slow time scale. We estimate an effective diffusion coefficient for the drift and compare the dynamics to analogous motions in Rayleigh–Bénard convection and Poiseuille flow data sets, suggesting that this spontaneous diffusive displacement of large coherent structures is common among different types of wall-bounded turbulent flows.
DOI: 10.3535/4d0-xt0-kxc
title: Arianta arbustorum arbustorum (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eh1-vpy-lcx
title: Aegopinella nitidula (Draparnaud, 1805)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q38-dwz-xb8
title: Liardetia convexiconica (Möllendorff, 1897)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.1594/pangaea.894346
title: Documentation of sediment core MSM44_374-3 (GeoB19948-3)
DOI: 10.1594/pangaea.984222
title: CFU counts of Vibrio spp. on seaweeds and water column at 16°C and 20°C

description: We investigated the impact of elevated water temperatures on the abundances of pathogenic Vibrio species associated with seaweeds and coastal waters. Three seaweed species - Fucus serratus, Palmaria palmata, and Ulva spp.- were collected from Plymouth Sound, United Kingdom, and used in a mesocosm experiment conducted at Plymouth Marine Laboratory in June 2024. The samples were exposed to two temperature treatments (16 °C and 20 °C) for seven days each to simulate warming ocean conditions. After the seven-day treatments, microbial suspensions (referred to as microbial soups) were prepared from each seaweed replicate and corresponding water column sample. These suspensions were filtered and incubated on ChromAgar Vibrio chromogenic media plates for 72 hours to selectively identify and differentiate Vibrio parahaemolyticus, Vibrio alginolyticus, and Vibrio vulnificus/cholerae. Colony-forming units (CFUs) were counted for each replicate, providing quantitative data on the response of these Vibrio species to elevated temperatures.
DOI: 10.3535/6pl-k75-kwa
title: Candidula rhabdotoides (A. J. Wagner, 1928)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jez-0f7-b7j
title: Helicostyla woodiana (I. Lea, 1840)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nq5-y1d-kyd
title: Helicella itala (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.1594/pangaea.974780
title: GNSS data of glacier motion in vertical and horizontal direction (summer 2017 and 2019)

description: The dataset contains GNSS observations of glacier motion, airborne radio echo sounding of englacial channels, airborne laser scanner data of supraglacial lake ground topography and supraglacial lake outlines from satellite remote sensing data of 79°N Glacier. The GNSS observations are from summer 2017 and 2019. The radar sounding of englacial channels was conducted in 2016, 2018 and 2021. The airborne laser scanner data was obtained in summer 2021. The supraglacial lake outlines are from 2005, 2012, 2015, 2019, 2020, 2022 and 2023. The data covers a supraglacial lake at 24.58969°W,79.14370°N. The purpose of data acquisition was to study supraglacial lake drainage mechanisms.
DOI: 10.3535/fy5-tey-ff3
title: Nucula hanleyi Winckworth, 1931

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qt6-kyq-7te
title: Alvania electa (Monterosato, 1874)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.1594/pangaea.888519
title: Crystal c-axes (fabric analyser G50) of ice core samples (vertical thin sections) collected from the polar ice core EGRIP, 118-350 m depth (2017)

description: 237 vertical thin sections measured with Fabric Analyser.Size of thin sections: ca. 6.7 x 9 cm²Resolution: 500px/cm (FA), images are horizontally mirrored to LASM images.Measurement of sections 242_1, 455_6 and 477_5 are not available.Resolution "20" means 20um pixel size (length).Measured at Alfred Wegener Institute for Polar and Marine Research, Bremerhaven, Germany.
DOI: 10.3535/g3z-mdh-m80
title: Parthena acutangula (Burrow, 1815)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xxf-qrs-c55
title: Monilearia tumulorum (P. B. Webb & S. Berthelot, 1833)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.w977sz
title: Occurrence Download

description: A dataset containing 96073 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cuscuta americana, Cuscuta approximata, Cuscuta azteca, Cuscuta boldinghii, Cuscuta brachycalyx, Cuscuta californica, Cuscuta campestris, Cuscuta cephalanthi, Cuscuta chinensis, Cuscuta compacta, Cuscuta coryli, Cuscuta cuspidata, Cuscuta denticulata, Cuscuta difficilis, Cuscuta draconella, Cuscuta epilinum, Cuscuta epithymum, Cuscuta erosa, Cuscuta exaltata, Cuscuta glabrior, Cuscuta glomerata, Cuscuta gronovii, Cuscuta harperi, Cuscuta howelliana, Cuscuta indecora, Cuscuta jepsonii, Cuscuta legitima, Cuscuta leptantha, Cuscuta liliputana, Cuscuta mitriformis, Cuscuta nevadensis, Cuscuta obtusiflora, Cuscuta occidentalis, Cuscuta odontolepis, Cuscuta pacifica, Cuscuta pentagona, Cuscuta plattensis, Cuscuta polygonorum, Cuscuta psorothamnensis, Cuscuta rostrata, Cuscuta runyonii, Cuscuta salina, Cuscuta saururi, Cuscuta squamata, Cuscuta subinclusa, Cuscuta suksdorfii, Cuscuta tuberculata, Cuscuta umbellata, Cuscuta veatchii, Cuscuta warneri)",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 96073 records from 1239 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010384-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uh54wt
title: Occurrence Download

description: A dataset containing 1598 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "TaxonKey is Quercus acutissima Carruth."
 ]
}

 The dataset includes 1598 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006999-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15281825
title: Processed single-cell multiome (RNA + ATAC) of the head of a four weeks post conception human embryo

description: Processed single-cell multiome (RNA + ATAC) of the head of a four weeks post conception human embryo

This dataset contains a total of four samples: 

- 10X403_1 - 10X403_2- 10X403_3- 10X403_4

For each sample we provide:

- scATAC-seq fragment file: <SAMPLE_ID>_ABCD_2_atac_fragments.tsv.gz- Index of scATAC-seq fragment file: <SAMPLE_ID>_ABCD_2_atac_fragments.tsv.gz.tbi- scATAC-seq cells passing filtering: <SAMPLE_ID>.cbs_custom_thresholds.tsv- scRNA-seq count matrix (matrix market format): <SAMPLE_ID>_ABCD_2_matrix.mtx.gz- scRNA-seq barcodes: <SAMPLE_ID>_ABCD_2_barcodes.tsv.gz- scRNA-seq gene symbols: <SAMPLE_ID>_ABCD_2_features.tsv.gz

Cell metadata is available in: cell_data.tsv. 

We provide the results from topic modeling:

- Cell topic probabilities of the subset of neural crest cells: neural_crest_cell_topic_contrib.tsv- Cell topic probabilities of the subset of neuron cells: neuron_cell_topic_contrib.tsv- Cell topic probabilities of the subset of progenitor crest cells: progenitor_cell_topic_contrib.tsv- Region topic probabilities of the subset of neural crest cells: neural_crest_region_topic_contrib.tsv- Region topic probabilities of the subset of neuron cells: neuron_region_topic_contrib.tsv- Region topic probabilities of the subset of progenitor cells: progenitor_region_topic_contrib.tsv

md5 checksums are available in the file checksums.txt
DOI: 10.5281/zenodo.15281826
title: Processed single-cell multiome (RNA + ATAC) of the head of a four weeks post conception human embryo

description: Processed single-cell multiome (RNA + ATAC) of the head of a four weeks post conception human embryo

This dataset contains a total of four samples: 

- 10X403_1 - 10X403_2- 10X403_3- 10X403_4

For each sample we provide:

- scATAC-seq fragment file: <SAMPLE_ID>_ABCD_2_atac_fragments.tsv.gz- Index of scATAC-seq fragment file: <SAMPLE_ID>_ABCD_2_atac_fragments.tsv.gz.tbi- scATAC-seq cells passing filtering: <SAMPLE_ID>.cbs_custom_thresholds.tsv- scRNA-seq count matrix (matrix market format): <SAMPLE_ID>_ABCD_2_matrix.mtx.gz- scRNA-seq barcodes: <SAMPLE_ID>_ABCD_2_barcodes.tsv.gz- scRNA-seq gene symbols: <SAMPLE_ID>_ABCD_2_features.tsv.gz

Cell metadata is available in: cell_data.tsv. 

We provide the results from topic modeling:

- Cell topic probabilities of the subset of neural crest cells: neural_crest_cell_topic_contrib.tsv- Cell topic probabilities of the subset of neuron cells: neuron_cell_topic_contrib.tsv- Cell topic probabilities of the subset of progenitor crest cells: progenitor_cell_topic_contrib.tsv- Region topic probabilities of the subset of neural crest cells: neural_crest_region_topic_contrib.tsv- Region topic probabilities of the subset of neuron cells: neuron_region_topic_contrib.tsv- Region topic probabilities of the subset of progenitor cells: progenitor_region_topic_contrib.tsv

md5 checksums are available in the file checksums.txt
DOI: 10.15468/dl.3k8sj6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"9685907","matchCase":false},{"type":"equals","key":"BASIS_OF_RECORD","value":"Preserved Specimen","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014322-250515123054153/datasets/export for details.
DOI: 10.15468/dl.ugdyz3
title: Occurrence Download

description: A dataset containing 178503 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Colibri coruscans (Gould, 1846)"
 ]
}

 The dataset includes 178503 records from 212 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014310-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sn8fbp
title: Occurrence Download

description: A dataset containing 9215 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hydrochoerus hydrochaeris (Linnaeus, 1766)"
 ]
}

 The dataset includes 9215 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014313-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18625807
title: Hunting for extremophiles: a systematic screening of freshwater microalgae for tolerance to high pH and high alkalinity cultivation

description: This upload provides all the data and code associated with the manuscript "Hunting for extremophiles: a systematic screening of freshwater microalgae for tolerance to high pH and high alkalinity cultivation" in ACS Sustainable Chemistry & Engineering under the DOI: https://doi.org/10.1021/acssuschemeng.5c09906

Data should be analyzed in R or R studio. The code in the .Rmd file should execute automatically with no modifications by the user as long as the csv file containing data "growth_over_time.csv" is placed in the same working directory that R is set to. The R project (.Rproj) file may also be opened directly to create an R project that is automatically set to the correct directory; again, all files should be placed in one folder for this to work. Metadata explaining the contents of the data file is provided in the README.csv file. Additionally, one html file is provided which contains all the code and output in R markdown format; this allows users to view code and output without directly running code in R.

ABSTRACT: Microalgae hold the potential to supply sustainable food, fuel, plastics, and chemicals at commercial scales. Cultivating microalgae at extreme pH (>10) and high alkalinity provides multiple benefits including 1) reducing the risk of contamination by undesired organisms and 2) enabling direct air capture of CO2, which expands the land area suitable for algae farming compared to using CO2 point sources alone. However, we currently have a limited understanding of which algal taxa can grow under these conditions. Therefore, we conducted a high-throughput screening of 49 freshwater microalgae strains, comprising 40 species, for their ability to grow in moderate (pH 8.5, 25 mM alkalinity), high (pH 10, 75 mM alkalinity), and extreme (pH 10, 150 mM alkalinity) cultivation environments. Our results show that moderate alkalinity tends to significantly increase algae growth (including potentially harmful strains). However, higher levels inhibited all but a small subset of green algae and cyanobacteria. Effects of salinity and alkalinity differed, indicating they are broadly decoupled. Our results identify new industrially relevant alkaline-tolerant strains, show that algae isolated from “normal” ecosystems can be extremophilic, and suggest that future bioprospecting efforts for alkaline-tolerant algae adapted to local climatic conditions could yield additional productivity gains for the algae industry.