cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.uueckz
title: Occurrence Download

description: A dataset containing 1002 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dillwynia hispida",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1002 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002857-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/zvkwpsw84d
title: WSN-MERLIN: Multi-Metric Wireless Sensor Network Dataset for Environment sensing, Routing, Energy, and Anomaly Analysis

description: WSN-MERLIN is a large-scale, synthetic wireless sensor network dataset designed to support research in network performance modeling, anomaly detection, energy-aware communications, and temporal analysis. The dataset includes multi-aspect measurements for environmental sensing, link quality, routing behavior, energy consumption, and traffic congestion across a clustered multi-hop WSN deployment.

It is suitable for use in machine learning, testing hypotheses in networking research, feature extraction benchmarking, and anomaly detection.
DOI: 10.17632/zvkwpsw84d.1
title: WSN-MERLIN: Multi-Metric Wireless Sensor Network Dataset for Environment sensing, Routing, Energy, and Anomaly Analysis

description: WSN-MERLIN is a large-scale, synthetic wireless sensor network dataset designed to support research in network performance modeling, anomaly detection, energy-aware communications, and temporal analysis. The dataset includes multi-aspect measurements for environmental sensing, link quality, routing behavior, energy consumption, and traffic congestion across a clustered multi-hop WSN deployment.

It is suitable for use in machine learning, testing hypotheses in networking research, feature extraction benchmarking, and anomaly detection.
DOI: 10.5061/dryad.ffbg79d00
title: Multiscale assessment of oviposition habitat associations and implications for management in the spotted lanternfly (Lycorma delicatula), an emerging invasive pest

description: 1. Control of incipient invaders—established invasive species in the early
 stages of spreading—can be inhibited by incomplete knowledge of the
 species’ habitat use. By identifying consistent habitat associations for
 incipient invaders early, control efforts can be more effective. Yet,
 because habitat associations are the result of multiscale processes,
 approaches are needed for integrating data collected across scales to
 identify them. 2. We employed a hierarchical, multiscale approach to
 identify oviposition habitat associations in the spotted lanternfly
 (Lycorma delicatula), an incipient invasive species of high concern in the
 United States. We targeted four oviposition habitat spatial scales most
 likely to be used by lanternflies and the spatial scales of explanatory
 habitat variables most easily used by managers to locate egg masses to
 control. 3. Spotted lanternflies exhibited oviposition habitat
 associations at the landscape, site, and tree scales. Overall,
 lanternflies oviposited more frequently at sites and on trees with low
 canopy cover in the surrounding landscape indicating higher use of
 human-impacted habitat. Additionally, they oviposited more frequently on
 trees from the Acer genus and in the crowns of larger trees beyond the
 reach of managers without special equipment. The duration a site had been
 invaded had opposing effects on oviposition at the site and tree scales.
 4. Despite high variation in the number of eggs per egg mass, no habitat
 variables explained this variation, suggesting more work is needed to
 understand spotted lanternfly reproductive output. 5. Synthesis and
 applications. Our results indicate a multiscale approach is needed for
 spotted lanternfly control with unique strategies for locating egg masses
 at sites and on trees that vary in invasion duration. Specifically, at
 younger sites at the invasion edge, managers should expect patchy
 colonization of sites, yet when a site is colonized, many trees will have
 egg masses. Comparatively, older sites at the invasion core are more
 likely to have egg masses present, yet often at a lower density, which may
 make them difficult to find on individual trees. Based on our results, we
 assert that multiscale investigations of habitat associations would likely
 inform the control of other incipient invasive species as well.  
  
description: The dataset was collected using traditional field survey methods
 followed by buffer calculation in Google Earth Engine as well as a spatial
 interpolation. Raw data were cleaned and harmonized using R programming
 for statistics version 4.1.1. 
description: The data file is a CSV and can be opened in Microsoft Excel,
 Google Sheets, LibreOffice Calc, or any other CSV viewer/editor. To follow
 the methods outlined in the manuscript, the data should then be processed
 using the R statistical computing software/language.
DOI: 10.17632/yx24nn7r47
title: A low-pressure measurement system for biomedical applications.

description: This repository contains all the necessary files to replicate the pressure measurement system, including its hardware, firmware, interface and data post-processing software.
DOI: 10.15468/dl.wmvh8t
title: Occurrence Download

description: A dataset containing 866 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gymnocladus dioicus",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 866 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003461-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/yx24nn7r47.1
title: A low-pressure measurement system for biomedical applications.

description: This repository contains all the necessary files to replicate the pressure measurement system, including its hardware, firmware, interface and data post-processing software.
DOI: 10.17632/5cf88337tx.2
title: Discovery of human gut phage-encoded Anti-CRISPR proteins unveils diverse mechanisms for phages to evade type II CRISPR immunity

description: This collection of Supplementary Tables provides comprehensive datasets and analyses supporting the systematic identification and characterization of CRISPR-Cas systems and anti-CRISPR (Acr) proteins in the human gut microbiome. Tables S1–S7 and S10 detail the detection, classification, and phylogenetic analysis of Class 1 and Class 2 CRISPR-Cas systems—including Cas9 orthologs—within the UHGG database. Tables S9 and S11 document spacer–virus connections between UHGG and GVD, enabling the prediction of phage-encoded Acrs. Tables S12–S14 summarize Acr candidate selection, codon optimization, and library construction. Functional validation data for Acrs targeting six Type II-Cas9 systems are presented in Tables S16–S22, with a non-redundant Acr set provided in Table S22. Finally, structural analyses, including fold similarity and the GutAcraca family, are summarized in Tables S24–S26.
Table S1. Class 1 CRISPR-Cas systems detected in UHGG, related to Figure 1A
Table S2. Class 2 CRISPR-Cas systems detected in UHGG, related to Figure 1A, B
Table S3. Type I CRISPR-Cas systems with Cas3 detected in UHGG, related to Figure 1A
Table S4. Type III CRISPR-Cas systems with Cas10 detected in UHGG, related to Figure 1A
Table S5. Distribution of type II, V, and VI CRISPR-Cas systems from Class 2 across microbial classes, related to Figure 1B
Table S6. Cas9 CDSs detected in UHGG, related to Figure 1C. Cas9_subfamily were obtained from UniProt according to UniProtKB_Entry annotated by UHGG. 
Table S7. Non-redundant Cas9 CDSs used to construct the phylogenetic tree, related to Figure 1C
Table S9. Connections between CRISPR spacers from UHGG and viral contigs from GVD through CRISPR-spacer blastn matches, related to Figure 2A and Figure 1D
Table S10. Non-redundant Cas9 CDSs used to construct the phylogenetic tree, related to Figure 1D
Table S11. Viral contigs in GVD which had CRISPR spacer matching with microbial genomes in UHGG carrying Cas9, related to Figure 2A
Table S12. Acr candidates with amino acid sequence, related to Figure 2A
Table S13. Selecting Acr candidates for DNA sequence codon optimization, related to Figure 2B
Table S14. Oligos design of Acr candidate library, related to Figure 2B
Table S16. Positive Acr candidates of SpyCas9, related to Figure S2A, B 
Table S17. Positive Acr candidates of SaCas9, related to Figure S2A, B
Table S18. Positive Acr candidates of St1Cas9, related to Figure S2A, B
Table S19. Positive Acr candidates of St3Cas9, related to Figure S2A, B
Table S20. Positive Acr candidates of FnCas9, related to Figure S2A, B
Table S21. Positive Acr candidates of NmCas9, related to Figure S2A, B
Table S22. 651 non-redundant positive Acr candidates in total, related to Figure 4A, B
Table S24. Structural similarity matrix of positive Acr candidates, related to Figure 4A, B and S5A
Table S25. Members of GutAcraca, related to Figure 4B
Table S26. Structural similarity analysis of GutAcraca in the AlphaFold database, related to Figure 5N
DOI: 10.5061/dryad.0p2ngf255
title: Data from: Confusion will be my epitaph: Genome-scale discordance stifles phylogenetic resolution of Holothuroidea

description: Sea cucumbers (Holothuroidea) are a diverse clade of echinoderms found
 from intertidal waters to the bottom of the deepest oceanic trenches.
 Their reduced skeletons and limited number of phylogenetically-informative
 traits have long obfuscated morphological classifications.
 Sanger-sequenced molecular datasets have also failed to constrain the
 position of major lineages. Noteworthy, topological uncertainty has
 hindered a resolution for Neoholothuriida, a highly diverse clade of
 Permo-Triassic age. We perform the first phylogenomic analysis of
 Holothuroidea, combining existing datasets with 12 novel transcriptomes.
 Using a highly-curated dataset of 1,100 orthologs, our efforts
 recapitulate previous results, struggling to resolve interrelationships
 among neoholothuriid clades. Three approaches to phylogenetic
 reconstruction (concatenation under both site-homogeneous and
 site-heterogeneous models, and coalescent-aware inference) result in
 alternative resolutions, all of which are recovered with strong support
 and across a range of datasets filtered for phylogenetic usefulness. We
 explore this intriguing result using gene-wise log-likelihood scores and
 attempt to correlate these with a large set of gene properties. While
 presenting novel ways of exploring and visualizing support for alternative
 trees, we are unable to discover significant predictors of topological
 preference, and our efforts fail to favor one topology. Neoholothuriid
 genomes seem to retain an amalgam of signals derived from multiple
 phylogenetic histories.
DOI: 10.17632/szyjr878ff
title: Does the digital economy amplify household income uncertainty? Evidence from China

description: Data and code for the paper entitled "Does the digital economy amplify household income uncertainty? Evidence from China"
DOI: 10.5061/dryad.mkkwh7149
title: Data from: Female and male plumage brightness is positively correlated among populations of the dichromatic Variable Seedeater

description: Because studies of plumage coloration often focus on highly elaborate and
 conspicuous males, little is known about the factors driving the evolution
 of drab plumage in females of dichromatic species. We explored variation
 in the color properties of drab female plumage across subspecies of the
 Variable Seedeater (Sporophila corvina), and found a correlation between
 plumage brightness of male and female plumage patches. This correlation is
 consistent with the hypothesis that differences in plumage brightness
 among females result, at least partially, from a genetic correlation or
 shared developmental pathway with the more conspicuous male plumage traits
 that are shaped by sexual selection. Further, we modeled the perception of
 female plumage using the avian visual system and found that most of the
 variation in color among females is mostly undetectable by birds;
 therefore, it is unlikely for such variation to have evolved via direct
 sexual selection as a signal for recognition or assortative mating.
 Together, these results suggest that variation in S. corvina female color
 result from non-adaptive processes. However, we found a reduced variation
 on color of dorsal patches compared with that of ventral patches among
 females, which could be explained by natural selection operation on
 crypsis, reducing the variation on dorsal patches. Finally, we found
 little differences in plumage color between adult females and juveniles,
 which suggest selection for juveniles to resemble adult females possibly
 to reduce aggression from adult males. Additional within-population
 studies and behavioral experiments are needed to discern the evolutionary
 factors driving variation on S. corvina female color and its function.
description: For details, please see README.md file and the accompanying
 published article: Ocampo, D., Barrantes, G., & Uy, J.A.C. (2023).
 Female and male plumage brightness is positively correlated among
 populations of the dichromatic Variable Seedeater. Ornithology,
 Accepted
description: For details, please see README.md file and the accompanying
 published article: Ocampo, D., Barrantes, G., & Uy, J.A.C. (2023).
 Female and male plumage brightness is positively correlated among
 populations of the dichromatic Variable Seedeater. Ornithology,
 Accepted
DOI: 10.17632/szyjr878ff.2
title: Does the digital economy amplify household income uncertainty? Evidence from China

description: Data and code for the paper entitled "Does the digital economy amplify household income uncertainty? Evidence from China"
DOI: 10.5061/dryad.pzgmsbcr8
title: Genetic dissection of triplicated chromosome 21 orthologs yields varying skeletal traits in Down syndrome model mice

description: Down syndrome (DS) phenotypes result from triplicated genes, but effects
 of three copy genes are not well known. A mouse mapping panel genetically
 dissecting human chromosome 21 (Hsa21) syntenic regions was used to
 investigate the contributions and interactions of triplicated Hsa21
 orthologous genes on mouse chromosome 16 (Mmu16) on skeletal phenotypes.
 Skeletal structure and mechanical properties were assessed in femurs of
 male and female Dp9Tyb, Dp2Tyb, Dp3Tyb, Dp4Tyb, Dp5Tyb, Dp6Tyb, Ts1Rhr,
 and Dp1Tyb;Dyrk1a+/+/- mice. Dp1Tyb mice, with the entire Hsa21 homologous
 region of Mmu16 triplicated, display bone deficits similar to those of
 humans with DS and served as a baseline for other strains in the
 panel. Bone phenotypes varied based on triplicated gene content,
 sex, and bone compartment. Three copies of Dyrk1a played a sex-specific,
 essential role in trabecular deficits and may interact with other genes to
 influence cortical deficits related to DS. Triplicated genes in Dp9Tyb and
 Dp2Tyb mice improved some skeletal parameters. As triplicated genes can
 both improve and worsen bone deficits, it is important to understand the
 interaction between and molecular mechanisms of skeletal alterations
 affected by these genes.
DOI: 10.17632/627vt9srfb
title: THE MEDIATING ROLE OF ESG DISCLOSURE IN THE BOARD GENDER DIVERSITY-FIRM VALUE RELATIONSHIP: EVIDENCE FROM VIETNAM

description: The dataset consists of 1 data file (xlsx)
DOI: 10.17632/627vt9srfb.1
title: THE MEDIATING ROLE OF ESG DISCLOSURE IN THE BOARD GENDER DIVERSITY-FIRM VALUE RELATIONSHIP: EVIDENCE FROM VIETNAM

description: The dataset consists of 1 data file (xlsx)
DOI: 10.5061/dryad.dv41ns22w
title: Data for: Emigration and survival correlate with different precipitation metrics throughout a grassland songbird's annual cycle

description: Many exogenous factors may influence demographic rates (i.e., births,
 deaths, immigration, emigration), particularly for migratory birds that
 must cope with variable weather and habitat throughout their range and
 annual cycle. In midcontinental grasslands, disturbance (e.g., fire and
 grazing) and precipitation influence variation in grassland structure and
 function, but we know little about when and why precipitation is
 associated with grassland species’ vital rates. We related estimates of
 detection, survival, and emigration to a priori sets of precipitation
 metrics to test the putative alternative factors influencing movement and
 mortality in grasshopper sparrows (Ammodramus savannarum). This species is
 a migratory songbird that exhibits exceptionally high rates of
 within-season and between-season dispersal. Between 2013 and 2020, we
 captured and resighted grasshopper sparrows in northeastern Kansas, USA,
 compiling capture histories for 1,332 adult males. We tested predictions
 of climatic hypotheses explaining variation in survival and emigration
 throughout a grasshopper sparrow’s annual cycle; both survival and
 emigration were associated with the El Niño-Southern Oscillation
 precipitation index (ESPI). Survival was positively related with ESPI
 during winter, and temporary emigration was curvilinearly related to
 breeding season ESPI lagged 2 years, with the highest site fidelity
 associated with intermediate rainfall values. The relationship between
 rainfall and temporary emigration likely reflects the influence of weather
 over multiple years on vegetation structure with consequent effects on
 local demography. This study provides compelling support for the idea that
 grassland species respond to high interannual variability by adopting
 dispersal strategies unlike those of many well-studied migrant birds.
 Furthermore, the results imply that the consequences of increasing
 climatic extremes may not be immediately apparent, with demographic
 consequences lasting for at least a few years.
DOI: 10.5061/dryad.hx3ffbgjg
title: Data for: Inflammation differentially controls transport of depolarizing Nav versus hyperpolarizing Kv channels to drive rat nociceptor activity

description: Inflammation causes pain by shifting the balance of ionic currents in
 nociceptors towards depolarization, leading to hyperexcitability. The
 ensemble of ion channels within the plasma membrane is regulated by
 processes including biogenesis, transport, and degradation. Thus,
 alterations in ion channel trafficking may influence excitability. Sodium
 channel NaV1.7 and potassium channel KV7.2 promote and oppose excitability
 in nociceptors, respectively. We used live-cell imaging to investigate
 mechanisms by which inflammatory mediators modulate the abundance of these
 channels at axonal surfaces through transcription, vesicular loading,
 axonal transport, exocytosis, and endocytosis. Inflammatory mediators
 induced a NaV1.7-dependent increase in activity in distal axons. Further,
 inflammation increased the abundance of NaV1.7, but not of KV7.2, at
 axonal surfaces by selectively increasing channel loading into anterograde
 transport vesicles and insertion at the membrane, without affecting
 retrograde transport. These results uncover a cell-biological mechanism
 for inflammatory pain and suggest NaV1.7 trafficking as a potential
 therapeutic target.
DOI: 10.17632/p7s4sfmsx2
title: Health sector involvement in federal environmental licensing and malaria control in the Brazilian Amazon: a retrospective observational study

description: Malaria, a disease with a long history in the Brazilian Amazon region, continues to be a significant public health challenge, particularly for those populations considered most vulnerable. Large-scale infrastructure developments in the region have the potential to heighten the risk of transmission by modifying environmental conditions and drawing migratory labour flows. Since 2001, Brazilian legislation has mandated the involvement of the health sector in environmental licensing processes in areas endemic or at risk of malaria, yet this integration remains limited. An analysis was conducted of federal licensing processes registered with Ibama between 2008 and 2024, with the objective of identifying those that occurred in Amazonian states and verifying which of these were monitored by the Ministry of Health (MoH). Of the 3,335 processes analysed, 897 (26.9%) involved the Amazon region. Of these, a total of 140 cases (representing 15.6% of the total number of cases) had a process initiated at the MoH. The mining (20.3%) and power generation (19.1%) sectors had the highest proportions of cases that resulted in a process being opened. The follow-up period exhibited variability over time, reaching a peak of 28.9% in 2014 and subsequently declining, with a figure of 6.7% recorded in 2018. While 70.0% of the projects under scrutiny resulted in a case being initiated at the MoH within a year, 8.6% required a period of up to three years, and a case was documented that exhibited a 16-year interval between the initiation of proceedings at Ibama and at the MoH. The findings suggest that most projects on Amazon region are progressing without the necessary involvement of the health sector, thereby increasing the risk of adverse impacts on malaria control measures. It is imperative to enhance the systematic and timely involvement of the MoH in environmental licensing processes to ensure that development is aligned with the overarching objective of eliminating malaria in Brazil.
DOI: 10.17632/p7s4sfmsx2.1
title: Health sector involvement in federal environmental licensing and malaria control in the Brazilian Amazon: a retrospective observational study

description: Malaria, a disease with a long history in the Brazilian Amazon region, continues to be a significant public health challenge, particularly for those populations considered most vulnerable. Large-scale infrastructure developments in the region have the potential to heighten the risk of transmission by modifying environmental conditions and drawing migratory labour flows. Since 2001, Brazilian legislation has mandated the involvement of the health sector in environmental licensing processes in areas endemic or at risk of malaria, yet this integration remains limited. An analysis was conducted of federal licensing processes registered with Ibama between 2008 and 2024, with the objective of identifying those that occurred in Amazonian states and verifying which of these were monitored by the Ministry of Health (MoH). Of the 3,335 processes analysed, 897 (26.9%) involved the Amazon region. Of these, a total of 140 cases (representing 15.6% of the total number of cases) had a process initiated at the MoH. The mining (20.3%) and power generation (19.1%) sectors had the highest proportions of cases that resulted in a process being opened. The follow-up period exhibited variability over time, reaching a peak of 28.9% in 2014 and subsequently declining, with a figure of 6.7% recorded in 2018. While 70.0% of the projects under scrutiny resulted in a case being initiated at the MoH within a year, 8.6% required a period of up to three years, and a case was documented that exhibited a 16-year interval between the initiation of proceedings at Ibama and at the MoH. The findings suggest that most projects on Amazon region are progressing without the necessary involvement of the health sector, thereby increasing the risk of adverse impacts on malaria control measures. It is imperative to enhance the systematic and timely involvement of the MoH in environmental licensing processes to ensure that development is aligned with the overarching objective of eliminating malaria in Brazil.
DOI: 10.17632/xzp5fdtt9g.2
title: Supplemental material for JODS (2025-27554)

description: Table S1. The relationship among the differentially abundant bacterial taxa, SCFAs, oxidative stress and inflammatory factors and bone structural parameters after CYC intervention.