cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.1c817
title: Data from: Evidence for carry-over effects of predator exposure on pathogen transmission potential

description: Accumulating evidence indicates that species interactions such as
 competition and predation can indirectly alter interactions with other
 community members, including parasites. For example, presence of predators
 can induce behavioral defenses in the prey, resulting in a change in
 susceptibility to parasites. Such predator-induced phenotypic changes may
 be especially pervasive in prey with discrete larval and adult stages for
 which exposure to predators during larval development can have strong
 carry-over effects on adult phenotypes. To our knowledge, no study to date
 has examined possible carry-over effects of predator exposure on pathogen
 transmission. We addressed this question using a natural food web
 consisting of the human malaria parasite Plasmodium falciparum, the
 mosquito vector Anopheles coluzzii, and a backswimmer, an aquatic predator
 of mosquito larvae. Although predator exposure did not significantly alter
 mosquito susceptibility to P. falciparum, it incurred strong fitness costs
 on other key mosquito life history traits including larval development,
 adult size, fecundity and longevity. Using an epidemiological model we
 show that larval predator exposure should overall significantly decrease
 malaria transmission. These results highlight the importance of taking
 into account the effect of environmental stressors on disease ecology and
 epidemiology.
description: effects of larval stress
 and parasite infectionfull data set of effects
 of predation stress and infection on larval development, adult size,
 fecundity, longevity and mosquito susceptibility.data pred-infect
 DRYAD.xls
DOI: 10.7910/dvn/9b6vcq
title: Parental Experience of Family Intervention for Children with Language Developmental Delay (LDD) in China: A Qualitative Study Framed by the ABC-X Model

description: This dataset originates from the qualitative study "A Qualitative Study on Parents’ Experiences of Family-Based Language Rehabilitation Training for Children with Language Developmental Delay." It includes anonymized semi-structured interview transcripts of 15–20 parents of children with language developmental delay, focusing on themes such as training perceptions, implementation approaches, challenges, support needs, and emotional experiences. All identifiable information is removed and replaced with unique IDs; transcripts are finalized after participant confirmation. The dataset is organized by participant ID, serving as empirical support for related home/community rehabilitation program development and subsequent academic research.
DOI: 10.5061/dryad.02pr5
title: Data from: Genome-wide association and genome partitioning reveal novel genomic regions underlying variation in gastrointestinal nematode burden in a wild bird

description: Identifying the genetic architecture underlying complex phenotypes is a
 notoriously difficult problem that often impedes progress in understanding
 adaptive eco-evolutionary processes in natural populations. Host–parasite
 interactions are fundamentally important drivers of evolutionary
 processes, but a lack of understanding of the genes involved in the
 host's response to chronic parasite insult makes it particularly
 difficult to understand the mechanisms of host life history trade-offs and
 the adaptive dynamics involved. Here, we examine the genetic basis of
 gastrointestinal nematode (Trichostrongylus tenuis) burden in 695 red
 grouse (Lagopus lagopus scotica) individuals genotyped at 384 genome-wide
 SNPs. We first use genome-wide association to identify individual SNPs
 associated with nematode burden. We then partition genome-wide
 heritability to identify chromosomes with greater heritability than
 expected from gene content, due to harbouring a multitude of additive SNPs
 with individually undetectable effects. We identified five SNPs on five
 chromosomes that accounted for differences of up to 556 worms per bird,
 but together explained at best 4.9% of the phenotypic variance. These SNPs
 were closely linked to genes representing a range of physiological
 processes including the immune system, protein degradation and energy
 metabolism. Genome partitioning indicated genome-wide heritability of up
 to 29% and three chromosomes with excess heritability of up to 4.3% (total
 8.9%). These results implicate SNPs and novel genomic regions underlying
 nematode burden in this system and suggest that this phenotype is
 somewhere between being based on few large-effect genes (oligogenic) and
 based on a large number of genes with small individual but large combined
 effects (polygenic).
description: PLINK MAP file for 271
 genome-wide SNPsPLINK MAP file
 containing chromosomal locations of 271 SNPs that passed quality
 control.grouseQCpass.mapSNP genotypes of 695 red grouse individualsTab-delimited text file containing SNP genotypes for 695 samples, in truncated PLINK PED format.grouseQCpass_genotypes.txtMetadata (sampling-related and phenotype data) for 695 red grouse individualsTab-delimited text file containing sampling-related and phenotype data for 695 individuals.grouseQCpass_metadata.txt
DOI: 10.5061/dryad.cn77k
title: Data from: Reinstatement, redescription, and emending of Spiranthes triloba (Orchidaceae): solving a 118 year old cryptic puzzle

description: Spiranthes (Orchidaceae) is a primarily North American genus that has
 traditionally presented numerous taxonomic challenges. Many species
 display marked intra-species morphological variation and/or inter-species
 morphological similarities, such that cryptic speciation may be common.
 Molecular phylogenetic, morphological, field, and herbarium research
 concerning the delimitation of Spiranthes odorata necessitates the
 reinstatement and redescription of Spiranthes triloba, a name alternately
 synonymized under Spiranthes cernua and Spiranthes odorata for more than a
 century. While lost under synonymy, plants matching the morphology of
 Spiranthes triloba were ambiguously described as Spiranthes
 ×itchetuckneensis and Spiranthes ×folsomii, and these are here
 synonymized. Although the species has a descriptive specific epithet, the
 labellum of the holotype is decidedly not tri-lobed; Spiranthes triloba is
 redescribed and emended here so as to reflect its actual morphology.
 Spiranthes triloba is restricted to frequently burned calcareous prairies
 and flatwoods of Florida, and likely warrants protection at the state
 level. A key is provided to distinguish this species from other Spiranthes
 found in Florida, and a lectotype is designated for S. ×folsomii.
description: Pace & Cameron
 Spiranthes triloba SYSBOT-D-15-00089 phylogenetic matrixPhylogenetic data matrix
 for evolutionary relationships of Spiranthes triloba, Spiranthes
 magnicamporum, Spiranthes odorata, and related species of Spiranthes. Most
 samples were collected in the wild and are vouchered by herbarium
 specimens deposited at CLEM, NY, NYS, and WIS. Generated by Geneious and
 Bayes block edited in Notepad.Pace_nexus_15Sep2015.nexMorphology data matrix Pace & Cameron Spiranthes trilobaMorphological data matrix from measured herbarium specimens of Spiranthes odorata and Spiranthes triloba. Voucher herbarium specimen information available within the manuscript.Pacetriloba.csv
DOI: 10.5061/dryad.18pd8
title: Data from: Low major histocompatibility complex class II variation in the endangered Indo-Pacific humpback dolphin (Sousa chinensis): inferences about the role of balancing selection

description: It has been widely reported that the major histocompatibility complex
 (MHC) is under balancing selection due to its immune function across
 terrestrial and aquatic mammals. The comprehensive studies at MHC and
 other neutral loci could give us a synthetic evaluation about the major
 force determining genetic diversity of species. Previously, a low level of
 genetic diversity has been reported among the Indo-Pacific humpback
 dolphin (Sousa chinensis) in the Pearl River Estuary (PRE) using both
 mitochondrial marker and microsatellite loci. Here, the expression and
 sequence polymorphism of 2 MHC class II genes (DQB and DRB) in 32 S.
 chinensis from PRE collected between 2003 and 2011 were investigated. High
 ratios of non-synonymous to synonymous substitution rates, codon-based
 selection analysis, and trans-species polymorphism (TSP) support the
 hypothesis that balancing selection acted on S. chinensis MHC sequences.
 However, only 2 haplotypes were detected at either DQB or DRB loci.
 Moreover, the lack of deviation from the Hardy–Weinberg expectation at DRB
 locus combined with the relatively low heterozygosity at both DQB locus
 and microsatellite loci suggested that balancing selection might not be
 sufficient, which further suggested that genetic drift associated with
 historical bottlenecks was not mitigated by balancing selection in terms
 of the loss of MHC and neutral variation in S. chinensis. The combined
 results highlighted the importance of maintaining the genetic diversity of
 the endangered S. chinensis.
description: The primary data and
 results for selection and phylogenetic analysisIn the manuscript, we
 have made a selection and phylogenetic analysis for MHC genes(DQB and DRB)
 in the Endangered Indo-Pacific Humpback Dolphin (Sousa chinensis).FUBAR
 software and CODENL program were used to test for the evidence of positive
 selection, and phylogenetic trees were reconstructed using MrBayes 3.1.2.
 The best-fit evolution model for MHC was selected on the basis of the
 Akaike Information Criterion(AIC) using MODELTEST 3.7. All the data
 underlying these analyses was submitted in a zip file(Data for
 Dryad).Data
 for Dryad.zip
DOI: 10.5061/dryad.13272
title: Data from: Phylogeography and evolution of a fungal-insect association on the Tibetan Plateau

description: Parasitoidism refers to a major form of inter-species interactions where
 parasitoids sterilize and/or kill their hosts typically before hosts reach
 reproductive age. However, relatively little is known about the
 evolutionary dynamics of parasitoidism. Here we investigate the spatial
 patterns of genetic variation of Chinese cordyceps, including both the
 parasitoidal fungus Ophiocordyceps sinensis and its host insects. We
 sampled broadly from alpine regions on the Tibetan Plateau and obtained
 sequences on seven fungal and three insect DNA fragments from each of the
 125 samples. Seven and five divergent lineages/cryptic species were
 identified within the fungus and host insects respectively. Our analyses
 suggested that O. sinensis and host insects originated at similar
 geographic regions in southern Tibet/Yunnan, followed by range expansion
 to their current distributions. Cophylogenetic analyses revealed a complex
 evolutionary relationship between O. sinensis and its host insects.
 Significant congruence was found between host and parasite phylogenies and
 the time estimates of divergence were similar, raising the possibility of
 the occurrence of cospeciation events, but the incongruences suggested
 that host shifts were also prevalent. Interestingly, one fungal genotype
 was broadly distributed, consistent with recent gene flow. In contrast,
 the high-frequency insect genotypes showed limited geographic
 distributions. The dominant genotypes from both the fungus and the insect
 hosts may represent ideal materials from which to develop artificial
 cultivation of this important Chinese traditional medicine. Our results
 demonstrate that both historical and contemporary events have played
 important roles in the phylogeography and evolution of the O.
 sinensis-ghost moth parasitoidism on the Tibetan Plateau.
description: Fungus_Alignment_7loci_125individual_4326ntAlignmnet file of 125 Ophiocordyceps sinensis individuals on seven nuclear loci: nrDNA ITS, MAT1-2-1, csp1, OSRC14, OSRC17, OSRC27, and OSRC32. See ReadMe file for dataset partition.Insect_Alignment_3loci_125individual_1404ntAlignment of 125 ghost moth individuals on three loci:COI, cytb, and wg. See ReadMe file for dataset partition.Fungus_MP_BestOutputTreeBest MP tree of Ophiocordyceps sinensis based on 6 loci (nrDNA ITS, MAT1-2-1, csp1, OSRC14, OSRC17, and OSRC27)Fungus_Bayes_OutputTree.conBI tree of Ophiocordyceps sinensis based on 6 loci (nrDNA ITS, MAT1-2-1, csp1, OSRC14, OSRC17, and OSRC27)Fungus_Garli_OutputTreeML tree of Ophiocordyceps sinensis based on 6 loci (nrDNA ITS, MAT1-2-1, csp1, OSRC14, OSRC17, and OSRC27)Insect_MP_BestOutputTreeBest MP tree of ghost moths based on 2 loci (COI and wg)Insect_Bayes_OutputTree.conBI tree of ghost moths based on 2 loci (COI and wg)Insect_Garli_OutputTreeML tree of ghost moths based on 2 loci (COI and wg)raw data of infection trialinfection trial.xlsraw data of density surveydensity survey.xls
DOI: 10.15468/dl.gf8s7f
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ixora coccinea",
 "Country is Angola",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025058-250811113504898/datasets/export for details.
DOI: 10.15468/dl.2vsvh8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ixora coccinea",
 "Country is Chad",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025059-250811113504898/datasets/export for details.
DOI: 10.15468/dl.8qw3un
title: Occurrence Download

description: A dataset containing 430400 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Scorzoneroides autumnalis"
 ]
}

 The dataset includes 430400 records from 951 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049793-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yn25nd
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "StateProvince is Puebla",
 "TaxonKey is Plocosperma buxifolium Benth."
 ]
}

 The dataset includes 19 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010477-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dmkumg
title: Occurrence Download

description: A dataset containing 5963 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhizophora mangle",
 "HasCoordinate is true",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "not" : {
 "HasGeospatialIssue" : [
 "is true"
 ]
 }
 }
 ]
}

 The dataset includes 5963 records from 170 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000505-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4211/hs.5535e4618ce545f5a66087ca784d7150
title: Data from Gambill et al. (2025): Exploring the influence of channel intermittency and discharge on transient storage and hyporheic exchange in stream systems: Insights from multiple logjams and channels

description: These data are published as part of Gambill, I., Marshall, A., Benson, D.A., McFadden, S., Navarre-Sitchler, A., Wohl, E., and Singha, K. (2025). Exploring the influence of morphologic heterogeneity and discharge on transient storage in stream systems: 1. Insights from the field. Water Resources Research, doi: 10.1029/2023WR036031.

Here, we explore how differences in morphologic heterogeneity due to logjams and secondary channels drive transient storage across discharge in two stream reaches within the Front Range of Colorado, USA. During three tracer tests conducted from baseflow to near-peak snowmelt, we collected instream fluid conductivity measurements and conducted electrical resistivity surveys to characterize tracer movement in the surface and subsurface of the stream system. The reach with two logjams and an intermittent secondary channel exhibited greater heterogeneity in surface transient storage, driving heterogeneity in hyporheic exchange flows, compared to the reach with a single logjam and a perennial secondary channel. As discharge increased, (a) backwater pools created by logjams increased in size in both systems, (b) channel complexity increased as logjams forced flow into secondary channels, and (c) subsurface flowpath distribution increased. Various transient storage indices provide some insight on solute retention but compressing data from this system into simple values was unintuitive given the noise in breakthrough-curve tails and secondary peaks in concentration. While subsurface exchange increases with discharge in both reaches, retention may not. Flushing of subsurface tracers is highest at medium discharge as interpreted from the electrical resistivity inversions in both reaches, perhaps because of a tradeoff between the increasing extent of subsurface flowpaths with discharge and larger pressure gradients for driving flow. This work is one of the first to explore controls on exchange and retention in stream systems with multiple logjams and evolving channel planform using geophysical data to constrain the subsurface movement of solutes.
DOI: 10.5281/zenodo.18408868
title: A comprehensive calibration approach for the Northwest River Forecast Center - supplementary data data for reproducing paper figures

description: This dataset contains data to accompany the paper "Walters, et al, 2026, A comprehensive calibration approach for the Northwest River Forecast Center, JAWRA"

 

CAMELS_all_locations - Calibration results using the NWRFC approach for all CAMELS locations in the NWRFC domain

CAMELS_NWRFC - Shape file and basin caracteristics for all CAMELS locations in the NWRFC domain

cb_2018_us_state_5m - Shape file with US state boundaries used in figure creation

nwrfc_basins_sf - Shape file with NWRFC basin delineations

NWRFC_Boundary - Shape file with the NWRFC service boundary

Optimization_CAMELS_FA - Full cross validation and calibration results with forcing adjustments applied for 4 NWRFC basins (FSSO3, SAKW1, WCHW1, WGCM8) 

Optimization_CAMELS_noFA - Full cross validation and calibration results without forcing adjustments applied for 4 NWRFC basins (FSSO3, SAKW1, WCHW1, WGCM8) 

single-basin-vs-regional-model - The model output from Kranzert et al., 2024 used for comparison https://doi.org/10.5194/hess-28-4187-2024 

world-administrative-boundaries - Shape file with country boundaries used in figure creation
DOI: 10.15468/dl.zz7hxc
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Distocyclus conirostris",
 "Year 2017-2026"
 ]
}

 The dataset includes 21 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000506-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18419561
title: Tree community structure data of arid riparian forests in the Ulungur River Basin

description: This dataset contains quadrat-level tree community structure and environmental data collected from arid riparian forests in the Ulungur River Basin, northwestern China. The data were obtained from field surveys conducted across 22 sampling sites, with each site including approximately four 30 m × 30 m quadrats (a small number of sites include two to three quadrats due to field constraints). For each quadrat, tree community structure was quantified using a set of stand-level structural indicators, including maximum and mean diameter at breast height, maximum and mean tree height, alive ratio, and mean health score. In addition, key environmental variables describing local habitat conditions were measured, including elevation, slope, and stand density. The dataset was used to investigate the relative contributions of environmental filtering and density dependence to variation in tree community structure at the quadrat scale. Specifically, the data support variance partitioning and redundancy analysis (RDA) to disentangle the independent and shared effects of topographic factors and stand density on forest stand structure in arid river valley ecosystems. All variables are provided in a single Excel file (Tree community structure data.xlsx). Two accompanying R scripts (Variance partitioning analysis R code.txt and RDA analysis R code.txt) reproduce the main statistical analyses reported in the associated manuscript. This dataset is intended to support transparency, reproducibility, and future comparative studies of riparian forest structure and ecological processes in arid environments.
DOI: 10.5281/zenodo.18419560
title: Tree community structure data of arid riparian forests in the Ulungur River Basin

description: This dataset contains quadrat-level tree community structure and environmental data collected from arid riparian forests in the Ulungur River Basin, northwestern China. The data were obtained from field surveys conducted across 22 sampling sites, with each site including approximately four 30 m × 30 m quadrats (a small number of sites include two to three quadrats due to field constraints). For each quadrat, tree community structure was quantified using a set of stand-level structural indicators, including maximum and mean diameter at breast height, maximum and mean tree height, alive ratio, and mean health score. In addition, key environmental variables describing local habitat conditions were measured, including elevation, slope, and stand density. The dataset was used to investigate the relative contributions of environmental filtering and density dependence to variation in tree community structure at the quadrat scale. Specifically, the data support variance partitioning and redundancy analysis (RDA) to disentangle the independent and shared effects of topographic factors and stand density on forest stand structure in arid river valley ecosystems. All variables are provided in a single Excel file (Tree community structure data.xlsx). Two accompanying R scripts (Variance partitioning analysis R code.txt and RDA analysis R code.txt) reproduce the main statistical analyses reported in the associated manuscript. This dataset is intended to support transparency, reproducibility, and future comparative studies of riparian forest structure and ecological processes in arid environments.
DOI: 10.15468/dl.55w8mm
title: Occurrence Download

description: A dataset listing the 6 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-90.92122 21.04807,-91.8727 17.83459,-93.34479 14.54931,-91.94451 13.22083,-88.06679 11.94621,-82.64517 14.5134,-83.38122 20.61721,-87.81546 22.17907,-90.92122 21.04807))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Stelgidopteryx serripennis"
 ]
}

 The dataset's 6 records were derived from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000495-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.