cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17637/rh.6154811.v1
title: Segmented Image Data for Fontainebleau and Berea Sandstones

description: This data contain 3D segmented images of two different sandstones. Three different data sets are contained and are outlined as follows, dry Fontainebleau sandstone, dry Berea sandstone, and saturated Berea sandstone. The 2D images for each data set were segmented using PerGeos (fromThermo Fisher). .am files were generated in PerGeos. .raw files can be opened using multiple applications.<br><br>Also, see the associated archive of pore-network modeling results from these samples at<br>Thomson, Paul-Ross, Aituar-Zhakupova, Aizhan, & Hier-Majumder, Saswata. (2018). Pore network modeling data for Fontainebleau and Berea Sandstones [Data set]. Zenodo. http://doi.org/10.5281/zenodo.1184144<br><br><b>Dry_Fontainebleau.zip<br></b>connected pore space only<b><br></b>Pore-space3.connected-Pore-Space.am<br>Pore-space3.connected-Pore-Space.raw<br><br><b>Dry_Berea.zip<br></b>connected pore space<br>Pore.Connected-Pore-Space.am<br>Pore.Connected-Pore-Space.raw<br>all segmented phases<br>all-phases.labels.am<br>all-phases.labels.raw<br><br><b>Saturated_Berea</b><br>connected pore space<br>Water-phase.Connected-Pore-Space.am<br>Water-phase.Connected-Pore-Space.raw<br>all segmented phases<br>A-filtered.labels.am<br>A-filtered.labels.raw<br><br><br><br><br><b><br><br></b><br><br>
DOI: 10.6084/m9.figshare.11566773.v1
title: Supplementary Material for: Evaluation of the in vitro Function of Platelet Concentrates from Pooled Buffy Coats or Apheresis

description: <b><i>Background:</i></b> Platelet concentrates play an important role in transfusion medicine. Their short lifespan and lack of robustness require efforts to ensure adequate product quality. In this study, we compared the in vitro quality of the main concentrate types, pooled platelet concentrate (PPC) from whole blood donations, and platelet concentrate from single-donor apheresis (APC). <b><i>Methods:</i></b> Twenty PPCs and 20 APCs prepared in plasma were analyzed on days 2, 4, and 7 of storage. Variables related to metabolism, degranulation, platelet aggregation, P-selectin expression, and annexin V binding were analyzed. Morphology was assessed by transmission electron microscopy of ultrathin sections. A microfluidic device was applied to test the effects of shear stress on platelet function. <b><i>Results:</i></b> The metabolic parameters indicated stable storage conditions throughout the 7-day period. The resting discoid form was the prevailing morphology on days 2 and 4 in the PPCs and APCs. Chemokine release and receptor shedding of soluble P-selectin and soluble CD40L equally increased in PPCs and APCs. Aggregation responses to ADP and collagen were heterogeneous, with marked losses in collagen responsiveness on day 4 in individual concentrates. Baseline expression of P-selectin in PPCs and APCs was low, and inducibility of P-selectin was well preserved until day 4. Under shear stress, equal adhesiveness and stability were found with platelets from PPCs and APCs. <b><i>Conclusions:</i></b> Platelets from PPCs and APCs showed similar in vitro function and stability parameters. However, platelet concentrates presented a high variability and individual concentrates an impaired functional capability. Identifying the factors contributing to this would help increase product reliability.
DOI: 10.6084/m9.figshare.17121645.v1
title: Model summaries by replicate from Long-term gut microbiome dynamics in <i>Drosophila melanogaster</i> reveal environment-specific associations between bacterial taxa at the family level

description: Summary information for the statistical models by replicate
DOI: 10.6084/m9.figshare.19154486.v1
title: Manuscript220210.xlsx

description: This data was collected via a survey in 2021/22 year.
DOI: 10.6084/m9.figshare.28114067.v1
title: Chromosome-level genome assembly of the threatened ornamental plant Hibiscus yunnanensis

description: Hibiscus is a genus of flowering plants belonging to the Malvaceae family, which encompasses over 200 species. It is widely distributed in warm-temperate, tropical, and subtropical regions across the world and has relatively high economic value.
DOI: 10.6084/m9.figshare.5440063.v1
title: Ocean acidification in New Zealand waters: trends and impacts

description: The threat posed by ocean acidification (OA) to the diversity and productivity of New Zealand marine ecosystems is assessed in a synthesis of published trends and impacts. A 20-year time series in Subantarctic water, and a national coastal monitoring programme, provide insight into pH variability, and context for experimental design, modelling and projections. A review of the potential impact of changes in the carbonate system on the major phyla in New Zealand waters confirms international observations that calcifying organisms, and particularly their early life-history stages, are vulnerable. The synthesis considers ecosystem and socio-economic impacts, and identifies current knowledge gaps and future research directions, including mechanistic studies of OA sensitivity. Advanced ecosystem models of OA, that incorporate the indirect effects of OA and interactions with other climate stressors, are required for robust projection of the future status of New Zealand marine ecosystems.
DOI: 10.4121/uuid:758cc5ac-7cf0-4d12-a869-cb4625026c26
title: Perceived transformational leadership style, work motivation, workaholism

description: The data file contain all the information required to evaluate an effect of perceived transformational leadership style on workaholism
DOI: 10.6084/m9.figshare.22691641.v1
title: Supplementary Material for: Optimal use of serum leucine-rich alpha-2 glycoprotein as a biomarker for small bowel lesions of Crohn's disease

description: Introduction A large proportion of small bowel lesions in Crohn’s disease (CD) may exist beyond the reach of ileocolonoscopy and there is no gold standard imaging modality to screen them, suggesting the need for optimal biomarkers. We aimed to compare the usefulness of C-reactive protein (CRP), faecal calprotectin (FC), and leucine-rich alpha-2 glycoprotein (LRG) in determining small bowel lesions of CD. Methods This was a cross-sectional observational study. CRP, FC, and LRG were prospectively measured in patients with quiescent CD who underwent imaging examinations (capsule or balloon-assisted endoscopy, magnetic resonance enterography, or intestinal ultrasound) selected by the physician in clinical practice. Mucosal healing (MH) of the small bowel was defined as a lack of ulcers. Patients with a Crohn’s disease activity index &gt; 150 and active colonic lesions were excluded. Results A total of 65 patients (27, MH; 38, small bowel inflammation) were analysed. The area under the curve (AUC) of CRP, FC, and LRG was 0.74 (95% confidence interval 0.61-0.87), 0.69 (0.52-0.81), and 0.77 (0.59-0.85), respectively. The AUC of FC and LRG in a subgroup of 61 patients with CRP &lt; 3 mg/l (26, MH; 32, small bowel inflammation) was 0.68 (0.50-0.81), and 0.74 (0.54-0.84), respectively. The cut-off of 16 μg/ml of LRG showed the highest positive predictive value of 1.00 with specificity of 1.00 while negative predictive value was highest (0.71) with sensitivity of 0.89 at the cut-off of 9 μg/ml. Discussion/Conclusion LRG can accurately detect and/or exclude the small bowel lesions by two cut-off values.
DOI: 10.6084/m9.figshare.6983018.v1
title: Faskowitz2018wsbmLifeSpan_data

description: This is the data repository for the paper entitled <em>Weighted Stochastic Block Models of the Human Connectome across the Life Span</em>. See paper and code for how data was preprocessed and analyzed.<br><i><b>A note to help decipher the data:</b></i><br>For the <b>counts</b> and <b>lengths</b> matrices, the rows/columns 1, 2, and 60 should be deleted. After this is done, rows/columns 1:114 will correspond to the ordered strings in the nodeLabels.mat file. Further, the 115:128 will correspond to subcortical structures in this order (in the paper, we do not use these nodes): <br>Left-Thalamus-Proper, Left-Caudate, Left-Putamen, Left-Pallidum, Left-Hippocampus, Left-Amygdala, Left-Accumbens-area, Right-Thalamus-Proper, Right-Caudate, Right-Putamen, Right-Pallidum, Right-Hippocampus, Right-Amygdala, Right-Accumbens-area. <br> Further, rows 1 and 59 should be deleted for the <b>coordinates</b> and <b>volumes</b> files. After this, the rows should be to aligned to the labels described above.<br>For those interested in why these changes need to be made -&gt; In the matrix data that comes out of Dipy, the first row corresponds to streamlines that intersect the label <i>0</i>, which is outside the brain. Labels <i>1</i> and <i>59</i> (which become rows <i>2</i> and <i>60</i> when that Dipy row is present) in the Yeo parcellation correspond to <i>unknown</i> areas in the parcellation, which sometimes get rendered as a few voxels down by the hippocampus + OFC (from what I've observed). <br><sub>Any opinion, findings, and conclusions or recommendations expressed in this material are those of the authors(s) and do not necessarily reflect the views of the National Science Foundation.</sub><br>
DOI: 10.6084/m9.figshare.7712246.v1
title: Supplementary Material for: Maternal Influence and Murine Housing Confound Impact of NLRP1 Inflammasome on Microbiome Composition

description: The NLRP1 inflammasome attenuates inflammatory bowel disease (IBD) progression and colitis-associated tumorigenesis. A possible mechanism postulates that the lack of the NLRP1 inflammasome creates permissive niches in the gut for pathogenic bacteria to flourish, causing dysbiosis and increased IBD susceptibility. To evaluate this hypothesis, we characterized the gut microbiome of wild-type, <i>Nlrp1b–/–</i>, and <i>Asc–/–</i> mice under naïve conditions by sequencing the V3 region of the 16s rRNA gene. For both genetically modified mouse lines, the microbiome composition reflected overrepresentation of bacteria associated with dysbiosis relative to wild-type animals. Measurement of short- and medium-chain fatty acids by mass spectrometry further revealed significant differences between genotypes. However, prior to concluding that the NLRP1 inflammasome plays a role in regulating the composition of the microbiome, we evaluated two additional strategies for cohousing wild-type and <i>Nlrp1b–/–</i> mice: breeding homozygous parents and cohousing at weaning, and breeding from heterozygous parents and cohousing littermates. We found that maternal influence was the greater predictor of microbiome composition rather than genotype. With the rise in microbiome research across disciplines, our study should be viewed as a cautionary example that illustrates the importance of careful breeding and housing strategies when evaluating host-microbiome interactions.
DOI: 10.17632/96v79pw4gz
title: A dataset on declared tax evasion attitudes of students and entrepreneurs from Poland under the slippery slope framework

description: Dataset accompanying the article in Data in Brief journal: "A dataset on declared tax evasion attitudes of students and entrepreneurs from Poland under the slippery slope framework".
DOI: 10.17632/99ybxpvhry
title: ART_adoptions_Europe_2004_2017

description: Statistical data on child adoption and Assisted Reproductive Technology (ART) in European countries from 2004 to 2017.

Data on child adoption come from P. Selman (2022) https://assets.hcch.net/docs/a8fe9f19-23e6-40c2-855e-388e112bf1f5.pdf.
Data on ART come from EHSRE https://www.eshre.eu/Data-collection-and-research/Consortia/EIM/Publications.aspx 
Data on employment and GDP come from Eurostat
https://ec.europa.eu/eurostat/databrowser/explore/all/all_themes?lang=en&display=list&sort=category
DOI: 10.6084/m9.figshare.1394581.v1
title: Defining the roles of IFN-γ and IL-17A in inflammation and protection against Helicobacter pylori infection

description: Fig 5B
DOI: 10.6084/m9.figshare.28039430.v1
title: Load Forecasting Dataset

description: The dataset includes the hourly load demand of residents in the three regions as well as meteorological conditions.If using this dataset, please cite the article:J. Xing, J. Su, Y. Xue, X. Chang, Z. Li and H. Sun, "A Unifying Framework for Short-Term Load Forecasting via EM-CCGPBOATT Methodology," in <i>IEEE Transactions on Power Systems</i>.
DOI: 10.17632/f36yn3g44n
title: The instances for Sections 3-5 in the multi-visit truck drone pickup and delivery problem

description: The three folders contain the instances used in the Sections 3-5 in the problem
DOI: 10.17632/gghrf6sz8t
title: Aligning active particles py package

description: The package performs molecular-dynamics-like agent-based simulations for models of aligning self-propelled particles in two dimensions such as e.g. the seminal Vicsek model or variants of it. In one class of the covered models, the microscopic dynamics is determined by certain time discrete interaction rules. Thus, it is no Hamiltonian dynamics and quantities such as energy are not defined. In the other class of considered models (that are generally believed to behave qualitatively the same) Brownian dynamics is considered. However, also there, the forces are not derived from a Hamiltonian. Furthermore, in most cases, the forces depend on the state of all particles and can not be decomposed into a sum of forces that only depend on the states of pairs of particles. Due to the above specified features of the microscopic dynamics of such models, they are not implemented in major molecular dynamics simulation frameworks to the best of the authors knowledge. Models that are covered by this package have been studied with agent-based simulations by dozens of papers. However, no simulation framework of such models seems to be openly available. The program is provided as a Python package. The simulation code is written in C. In the current version, parallelization is not implemented.
DOI: 10.17632/jrsb4b9yy5
title: Thermal Inspection Dataset for Defect Segmentation in CFRP Laminates

description: This dataset contains thermal image data and corresponding annotations from a pulsed thermography (PT) inspection conducted on a carbon fiber-reinforced polymer (CFRP) laminate. The dataset is designed to support research in defect segmentation, early defect detection, and related applications in composite material inspections.

Dataset Composition:

Images:
A total of 1,034 thermal images captured using a midwave infrared (MWIR) camera at a resolution of 640 × 512 pixels and a frame rate of 55 Hz. These images were recorded during PT inspections following a short, intense heat pulse.

Annotations:
Each of the thermal images has a corresponding expert-annotated image, resulting in 1,034 segmentation masks. The annotations were created using the VGG Image Annotator, a tool developed by the Visual Geometry Group at the University of Oxford, and represent the ground truth data for model training and validation.

Sample Details:

Material:
The sample is a unidirectional carbon/PEEK laminate with a fiber volume fraction of 61%. The stacking lay-up of the laminate is [02/902]6, and its dimensions are 100 × 100 mm.

Defect Characteristics:
Artificial defects in the form of Kapton tape inserts were introduced into the laminate during the moulding process. These defects vary in size and depth:

Nominal Depths:
D1: 0.13 mm
D2: 0.26 mm
D3: 0.39 mm
Nominal Sizes:
2 × 2 mm
3 × 3 mm
4 × 4 mm

Inspection Methodology:
A MWIR camera captured thermal profiles as the surface of the laminate cooled after heat application. Images display the temporal evolution of surface defects, highlighting changes over time. This temporal variation is critical for identifying and segmenting defects accurately.

Applications:
Defect segmentation in composite materials.
Development and validation of machine learning models for thermal image analysis.
Early detection and tracking of defect progression.

Ground Truth and Segmentation Masks:
The annotated dataset includes:
Segmentation masks created from the annotations, used for model training and validation.

If you use this dataset in your research, please acknowledge the authors and cite the associated publication.
For more details or to access the dataset, please contact the authors.

Associated publication: 
Garcia Vargas, I., & Fernandes, H. (2025). Spatial and temporal deep learning algorithms for defect segmentation in infrared thermographic imaging of carbon fibre-reinforced polymers. Nondestructive Testing and Evaluation, 1–21. https://doi.org/10.1080/10589759.2025.2457593
DOI: 10.17632/vmpzgpsz6m
title: Terrestrial Orbit-Spin Coupling Torques (1860-2040)

description: The files archived here comprise the underlying data for the paper “Orbit-spin coupling and multiyear droughts of the Western USA: Improving lead times for weather and climate prediction.” A draft version of this paper may be accessed at: http://arxiv.org/abs/2112.02186. The orbit-spin coupling mechanism (described in the above manuscript and in the listed references) intermittently adds momentum to atmospheric motions in irregular pulses. The data archived here gives the source function for the accelerations, at 2-hr time intervals, for the period 1860-2040. The calculated accelerations may be incorporated within numerical Earth System models and GCMs, with the goal of improving the agreement between numerical modeling outcomes and atmospheric observations in the time domain. Prior numerical modeling investigations have enabled successful years-in-advance forecasting of planetary scale weather and climate anomalies on Mars (Mischna & Shirley 2017: Planetary & Space Science 141, 45-72; Shirley et al., Icarus 317, 192-208: https://doi.org/10.1016/j.icarus.2018.07.024).  Initial results obtained for the terrestrial case are encouraging (http://arxiv.org/abs/2112.02186).
DOI: 10.17632/w284bjnjtj
title: Pin and roughness profile data for: Sensitivity of the Stribeck curve to the pin geometry of a pin-on-disc tribometer

description: Pin and roughness profile data that was used in the article: Sensitivity of the Stribeck curve to the pin geometry of a pin-on-disc tribometer
DOI: 10.6084/m9.figshare.1066030.v1
title: C==C Excel spreadsheets to calculate self-association and p-values of dialkynyl receptor

description: Supplementary Information to: "Apparent non-statistical binding in a ditopic receptor for guanosine". Org. Biomol. Chem. 2009, 7, 2093-2103. doi: 10.1039/b812969j Excel spreadsheets allowing the calculation of binding constanst and p-values for guanosine (G) binding to cytosine (C) and ditopic cytosine receptors. Determination of cooperativity.
DOI: 10.6084/m9.figshare.25764108.v2
title: Urban monthly land dynamics Sentinel-2 benchmark dataset

description: The public data set of the paper "<b>Time-series land cover change detection using deep learning-based temporal semantic segmentation</b>" uses monthly synthesized Sentinel-2 for time series semantic change detection. A total of 32894 samples were collected. Each timestamp has a land cover type annotation. Anyone can use this data set to conduct further research. We will add more areas in the future.<b>Data description:</b>The time series length of the sample is 48, 48 months.The dimension of the time series is 13: [Sentinel-2 data (10) + Lable (1) + Lon(1) + Lat (1) ].Label mapping: 0 is water body, 1 is woodland, 2 is grassland, 3 is bare soil, 4 is impervious surface, 5 is cropland.For any implementation details, you can refer to the paper or github.<b>Paper citations:</b>He H, Yan J, Liang D, Sun Z, Li J, Wang L. Time-series land cover change detection using deep learning-based temporal semantic segmentation. Remote Sensing of Environment. 2024, 305:114101.<br><b>Sentinel-2 time-series image </b><b>dataset:</b>Shenzhen_Link: https://pan.baidu.com/s/1ua7qguFZ5TYpjkSECF9Z8Q?pwd=cug2Wuhan_Link: https://pan.baidu.com/s/1-vaumdV00OHsgwKIVE_wGA?pwd=cug2Xiong'an New Area_Link: https://pan.baidu.com/s/1Led0sXkUeebW39D-LPKAqw?pwd=cug2Cairo_Link: https://pan.baidu.com/s/1lf49HLEmaDQtwEspfl_0FA?pwd=cug2Melbourne_Link: https://pan.baidu.com/s/1Rtnv9nW9O-NzOItK5UmGGA?pwd=cug2San Francisco_Link: https://pan.baidu.com/s/1Zt-MhbsPl7PyUcU35V0-ug?pwd=cug22025.03.07: Added datasets for San Pablo and Mexicali for 2020-2023.<br>
DOI: 10.17632/4h8cgjh87y
title: A Contextual Pathway to Measuring the Relationship Between Corporations’ Profitability and Social Responsibility of Businesses (SRoB): A Theoretical Equation

description: This research article (i.e., scholarly literature) continues prior research into analyzing how beneficial it is for firms to use nonfinancial social responsibility of businesses (SRoB) data as a method for profit generation. The prior research concluded that the extent of the relationship between corporations’ profitability and nonfinancial SRoB data (i.e., environmental, social, and governance [ESG] ratings) cannot be applied to the profitability measurement lens of how firms use their assets, shareholders’ equity, or how well corporations are in containing their operations and overhead costs. The increase or decrease of return on asset (ROA), return on equity (ROE), and net profit margin (NPM), plus the morally-framed nature of ESG ratings, are incomparable with that of ESG ratings. This research article continues the prior recommended research suggestion of involving accounting-based indicators and nonfinancial information by creating an instrument for social return. This article makes a theoretical equation to measure the relationship between corporations’ profitability and SRoB data.
DOI: 10.17632/vw2bb5jy99
title: STIFMap_dataset

description: The dataset used to train and validate neural networks for STIFMap generation.

Accompanies the manuscript: ""STIFMap employs a convolutional neural network to reveal spatial mechanical heterogeneity and tension-dependent activation of an epithelial to mesenchymal transition within human breast cancers"

Also see https://github.com/cstashko/STIFMaps for model training code and trained models
DOI: 10.17632/x4vrpzjb2g
title: Supplemental figures 1 and 2

description: Supplemental Figure 1. Demographic data of the patients included in the study and characteristics of the biopsies diagnosed as atypical squamous proliferation.

Supplemental Figure 2. Example photomicrographs of histopathology from skin biopsy diagnosed as atypical squamous proliferation favored benign (Left) and post-excision of the same lesion showing squamous cell carcinoma (Right). Hematoxylin and eosin-stained formalin-fixed paraffin-embedded tissue, magnification x20).
DOI: 10.6084/m9.figshare.17433440.v1
title: Mental workload measures as a predictor of operator performance lessons learnt from ATM task related experiments- DATASETS

description: We present 2 datasets of both experiments presented in the manuscript called: "Mental workload measures as a predictor of operator performance lessons learnt from ATM task related experiments"
DOI: 10.6084/m9.figshare.4497218.v2
title: Qualitative codes for the consequences of unhappiness of software developers

description: Qualitative codes for the consequences of unhappiness of software developers.<br>See version 1 (https://doi.org/10.6084/m9.figshare.4497218.v1) for the codes belonging to the papers:<br>D. Graziotin, F. Fagerholm, X. Wang, and P. Abrahamsson. "Consequences of unhappiness while developing software ". In Proceedings of the 2nd International Workshop on Emotion Awareness in Software Engineering (SEmotion '17). Buenos Aires, Argentina, 2017, pp. 42-47.<br><br>D. Graziotin, F. Fagerholm, X. Wang, and P. Abrahamsson. "Unhappy developers: bad for themselves, bad for process, and bad for software product". In Proceedings of the 39th International Conference on Software Engineering Companion (ICSE-C '17). Buenos Aires, Argentina, 2017, pp. 362-364.<br>