cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13322921
title: Ostracoda Lifedesk (myspecies): Resource (230) DwCA

description: This is where EOL hosts source datasets (archives, dumps, etc.) from EOL content partners (especially partners without a web presence of their own).

This organization will also include the content partner utility files EOL connectors use to generate a particular content partner__s resource EOL archive or XML.

For questions or suggestions please visit the EOL Services forum at http://discuss.eol.org/c/eol-services
DOI: 10.5281/zenodo.13322922
title: Ostracoda Lifedesk (myspecies): Resource (230) DwCA

description: This is where EOL hosts source datasets (archives, dumps, etc.) from EOL content partners (especially partners without a web presence of their own).

This organization will also include the content partner utility files EOL connectors use to generate a particular content partner__s resource EOL archive or XML.

For questions or suggestions please visit the EOL Services forum at http://discuss.eol.org/c/eol-services
DOI: 10.15468/dl.2j6gvk
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-14.24874 34.60051,35.24874 34.60051,35.24874 54.39949,-14.24874 54.39949,-14.24874 34.60051))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tetraloniella fulvescens (Giraud, 1863)"
 ]
}

 The dataset includes 135 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046628-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngfhpb
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-4.75026 39.99990,22.75026 39.99990,22.75026 51.00010,-4.75026 51.00010,-4.75026 39.99990))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tetralonia fulvescens Giraud, 1863"
 ]
}

 The dataset includes 66 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039488-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13235568
title: User Generated Content (EOL v2): taxonomic propagation - exemplar images

description: https://eol-jira.bibalex.org/browse/DATA-1786
For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at 
http://discuss.eol.org/c/eol-services
DOI: 10.5281/zenodo.13305572
title: User Generated Content (EOL v2): taxonomic propagation - exemplar images

description: https://eol-jira.bibalex.org/browse/DATA-1786
For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at 
http://discuss.eol.org/c/eol-services
DOI: 10.15468/dl.8qyy9s
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhabderemia fascicularis Topsent, 1927"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001618-250212154643175/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13319927
title: Water Body Checklists 2019: Lincoln Sea Species List

description: Species checklists created using effechecka and modified polygons from IHO. The polygons were reduced in resolution.List of species collected from the Lincoln Sea using effechecka and a modified polygon from the International Hydrographic Association. A filter was applied (based on data from WoRMS) to remove all non-marine taxa.
DOI: 10.5281/zenodo.13319926
title: Water Body Checklists 2019: Lincoln Sea Species List

description: Species checklists created using effechecka and modified polygons from IHO. The polygons were reduced in resolution.List of species collected from the Lincoln Sea using effechecka and a modified polygon from the International Hydrographic Association. A filter was applied (based on data from WoRMS) to remove all non-marine taxa.
DOI: 10.5281/zenodo.13235556
title: User Generated Content (EOL v2): user exemplar images

description: https://eol-jira.bibalex.org/browse/DATA-1746
Data as of Oct 25, 2018
For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at 
http://discuss.eol.org/c/eol-services
DOI: 10.5281/zenodo.13305564
title: User Generated Content (EOL v2): user exemplar images

description: https://eol-jira.bibalex.org/browse/DATA-1746
Data as of Oct 25, 2018
For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at 
http://discuss.eol.org/c/eol-services
DOI: 10.25850/nioz/7b.b.9h
title: ACTNOW project - Fit for purpose datasets Task 1.3

description: These are meta-data about mechanistic single species movement responses, mechanistic single species physiological responses, DEB species parameterization, community data, food web and ecosystem models collected from WP2 and WP3 contributors for task 1.3 within the ACTNOW project.
DOI: 10.5281/zenodo.14861166
title: Dataset of Proteins Involved in Metal Resistance

description: Dataset of Proteins Involved in Metal Resistance

 

General Information

This repository contains a curated collection of protein datasets related to Metal resistance in bacteria, fungi, and plants.

 

The datasets have been compiled from multiple publicly available sources and filtered for relevance.



Bacterial Metal Resistance Proteins




BacMet: Creative Commons Attribution 4.0 International [CC BY 4.0](https://bacmet.biomedicine.gu.se/)

UniProt: Creative Commons Attribution 4.0 International [CC BY 4.0](https://www.uniprot.org/help/license)




Fungal Metal Resistance Proteins






UniProt: Creative Commons Attribution 4.0 International [CC BY 4.0](https://www.uniprot.org/help/license)



Plant Metal Resistance Proteins



  UniProt: Creative Commons Attribution 4.0 International [CC BY 4.0](https://www.uniprot.org/help/license)

  PlantPres: No licensing associated. (http://www.proteome.ir/ContactUs.aspx)


Usage and Attribution

This dataset is freely available under CC BY 4.0, respecting the original data sources' licensing terms.

 

If you use this dataset, please cite:

 



UniProt- The UniProt Consortium (2024). Nucleic Acids Research, 52(D1), D1–D10. [DOI: 10.1093/nar/gky1049](https://doi.org/10.1093/nar/gky1049) 

MEGARes-Lakin, S. M., et al. (2017). Nucleic Acids Research, 45(D1), D574–D580. [DOI: 10.1093/nar/gkw1009](https://doi.org/10.1093/nar/gkw1009) 

BacMet- Pal, C., et al. (2014). Nucleic Acids Research, 42(D1), D737–D743. [DOI: 10.1093/nar/gkt1252](https://doi.org/10.1093/nar/gkt1252) 

PlantPres- Mousavi et al. (2016), Journal of Proteomics,143 , D69-D72. [DOI: 10.1016/j.jprot.2016.03.009](https://doi.org/10.1016/j.jprot.2016.03.009)




 

BIOSYSMOdb was developed as part of the BIOSYSMO project, which has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement No. 101060211.


Acknowledgments



BacMet, UniProt, and PlantPres – For providing essential data that supported the curation of BIOSYSMOdb.

BIOSYSMO consortium – For their contributions to the database’s design and development.



We extend our gratitude to the Horizon Europe programme and the European Union for their support in advancing research on bioremediation and biodegradation.


 

 

Contact Information

For inquiries, please contact:  

📧 Project Coordinator: Dr. Sara Gil Guerrero, Main Researcher: Marta Franco de Benito, MsC

🏛️ IDENER.ai  

✉️ sara.gil@idener.ai , marta.franco@idener.ai

 

Version and Updates

Version: 1.0  (for all datsets)

Last updated: 02/12/2025
DOI: 10.5281/zenodo.14861167
title: Dataset of Proteins Involved in Metal Resistance

description: Dataset of Proteins Involved in Metal Resistance

 

General Information

This repository contains a curated collection of protein datasets related to Metal resistance in bacteria, fungi, and plants.

 

The datasets have been compiled from multiple publicly available sources and filtered for relevance.



Bacterial Metal Resistance Proteins




BacMet: Creative Commons Attribution 4.0 International [CC BY 4.0](https://bacmet.biomedicine.gu.se/)

UniProt: Creative Commons Attribution 4.0 International [CC BY 4.0](https://www.uniprot.org/help/license)




Fungal Metal Resistance Proteins






UniProt: Creative Commons Attribution 4.0 International [CC BY 4.0](https://www.uniprot.org/help/license)



Plant Metal Resistance Proteins



  UniProt: Creative Commons Attribution 4.0 International [CC BY 4.0](https://www.uniprot.org/help/license)

  PlantPres: No licensing associated. (http://www.proteome.ir/ContactUs.aspx)


Usage and Attribution

This dataset is freely available under CC BY 4.0, respecting the original data sources' licensing terms.

 

If you use this dataset, please cite:

 



UniProt- The UniProt Consortium (2024). Nucleic Acids Research, 52(D1), D1–D10. [DOI: 10.1093/nar/gky1049](https://doi.org/10.1093/nar/gky1049) 

MEGARes-Lakin, S. M., et al. (2017). Nucleic Acids Research, 45(D1), D574–D580. [DOI: 10.1093/nar/gkw1009](https://doi.org/10.1093/nar/gkw1009) 

BacMet- Pal, C., et al. (2014). Nucleic Acids Research, 42(D1), D737–D743. [DOI: 10.1093/nar/gkt1252](https://doi.org/10.1093/nar/gkt1252) 

PlantPres- Mousavi et al. (2016), Journal of Proteomics,143 , D69-D72. [DOI: 10.1016/j.jprot.2016.03.009](https://doi.org/10.1016/j.jprot.2016.03.009)




 

BIOSYSMOdb was developed as part of the BIOSYSMO project, which has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement No. 101060211.


Acknowledgments



BacMet, UniProt, and PlantPres – For providing essential data that supported the curation of BIOSYSMOdb.

BIOSYSMO consortium – For their contributions to the database’s design and development.



We extend our gratitude to the Horizon Europe programme and the European Union for their support in advancing research on bioremediation and biodegradation.


 

 

Contact Information

For inquiries, please contact:  

📧 Project Coordinator: Dr. Sara Gil Guerrero, Main Researcher: Marta Franco de Benito, MsC

🏛️ IDENER.ai  

✉️ sara.gil@idener.ai , marta.franco@idener.ai

 

Version and Updates

Version: 1.0  (for all datsets)

Last updated: 02/12/2025
DOI: 10.5281/zenodo.14845780
title: Fingerprint Matrix Imaging

description: Ultrasound data associated with the paper "Fingerprint Matrix Concept for Detecting, Localizing and Characterizing Targets in Complex Media". 

 

Reflection matrix of metal spheres hidden in the granular suspension (Fig.1, Fig.3):

2022_02_19_10-27-13_Sonde3D_VirtSrc_RepImp_Spheres5AND8AND10mm_ZAround20mm_Sand300TO315um_Cache_SOS1500ms_Data.mat

 

Reflection matrix of the 10 mm-diameter metal sphere in free space (Fig.2)



2021_10_13_14-10-54_Sonde3D_VirtSrc_FullVsBasis_RepImp_BilleDiam10mm_Z20mm_Data.mat

 

Reflection matrix of the 8 mm-diameter metal sphere in free space



2022_01_27_10-06-24_Sonde3D_VirtSrc_RepImp_Sphere8mm_Z20mm_SOS1500ms_Data.mat

 



Reflection matrix of the lesion marker hidden in the foam





2022_04_26_14-39-38_Sonde3D_VirtSrc_Hologic_hiddenUnderSponge_Zaround30mm_translated_Data.mat



 



Reflection matrix of the lesion marker in free space







2022_04_26_14-33-39_Sonde3D_VirtSrc_Hologic_Nothidden_Zaround30mm_Data.mat

 



Reflection matrix of the muscle tissue









Rframe_1-1nbFrame1_Nangle101_freq2.5-9.5MHz_subfreqBand-7MHz-dFreqInfMHz_z2-60mm_SOS1580_dZFoc65.7873mm_dRmax0.1mm_RxFnum1_______TEST.mat
DOI: 10.15468/dl.mjdzb3
title: Occurrence Download

description: A dataset containing 558169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Solanum dulcamara L."
 ]
}

 The dataset includes 558169 records from 2585 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001606-250212154643175/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccp56df
title: CCDC 630614: Experimental Crystal Structure Determination

description: Related Article: Yu-Xi Sun, Qing-Li Hao, Wen-Xian Wei, Zong-Xue Yu, Lu-De Lu, Xin Wang, Yi-Shi Wang|2009|J.Mol.Struct.|929|10|doi:10.1016/j.molstruc.2009.03.035
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccsvdll
title: CCDC 740360: Experimental Crystal Structure Determination

description: Related Article: A.F.Armstrong, J.M.Lebert, J.D.Brennan, J.F.Valliant|2009|Organometallics|28|2986|doi:10.1021/om8011807
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrcxqq
title: CCDC 696654: Experimental Crystal Structure Determination

description: Related Article: T.K.Chakraborty, R.Samanta, S.Roy, B.Sridhar|2009|Tetrahedron Lett.|50|3306|doi:10.1016/j.tetlet.2009.02.063
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs0r4n
title: CCDC 715701: Experimental Crystal Structure Determination

description: Related Article: T.Takeda, H.Kawai, R.Herges, E.Mucke, Y.Sawai, K.Murakoshi, K.Fujiwara, T.Suzuki|2009|Tetrahedron Lett.|50|3693|doi:10.1016/j.tetlet.2009.03.202
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/a4jpr7
title: Données naturalistes opportunistes issues de la plateforme INaturalist-Données naturalistes opportunistes "favinola"

description: Données naturalistes opportunistes saisies sur iNaturalist à partir du compte "favinola"
DOI: 10.5517/ccs0r5p
title: CCDC 715702: Experimental Crystal Structure Determination

description: Related Article: T.Takeda, H.Kawai, R.Herges, E.Mucke, Y.Sawai, K.Murakoshi, K.Fujiwara, T.Suzuki|2009|Tetrahedron Lett.|50|3693|doi:10.1016/j.tetlet.2009.03.202
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs0r6q
title: CCDC 715703: Experimental Crystal Structure Determination

description: Related Article: T.Takeda, H.Kawai, R.Herges, E.Mucke, Y.Sawai, K.Murakoshi, K.Fujiwara, T.Suzuki|2009|Tetrahedron Lett.|50|3693|doi:10.1016/j.tetlet.2009.03.202
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs0x3s
title: CCDC 715855: Experimental Crystal Structure Determination

description: Related Article: Shaohua Yan, Xinxin Li, Xiangjun Zheng|2009|J.Mol.Struct.|929|105|doi:10.1016/j.molstruc.2009.04.012
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs3yxq
title: CCDC 718794: Experimental Crystal Structure Determination

description: Related Article: B.G.Mukhopadhyay, S.Mukhopadhyay, M.F.C.G.da Silva, M.A.J.Charmier, A.J.L.Pombeiro|2009|Dalton Trans.||4778|doi:10.1039/b902007a
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.27050.95684
title: Infant Survivor of First Afghan War who raised Garhwal Rifles
DOI: 10.5517/ccqvrny
title: CCDC 681121: Experimental Crystal Structure Determination

description: Related Article: R.H.Laye, E.C.Sanudo|2009|Inorg.Chim.Acta|362|2205|doi:10.1016/j.ica.2008.09.052
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctp33p
title: CCDC 765052: Experimental Crystal Structure Determination

description: Related Article: E.Alig, T.Bernert, L.Fink, N.Kulcu, T.Yesilkaynak|2010|Acta Crystallogr.,Sect.E:Struct.Rep.Online|66|m239|doi:10.1107/S1600536810001820
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrxz6t
title: CCDC 713037: Experimental Crystal Structure Determination

description: Related Article: K.Izod, L.J.Bowman, C.Wills, W.Clegg, R.W.Harrington|2009|Dalton Trans.||3340|doi:10.1039/b822054a
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrxz7v
title: CCDC 713038: Experimental Crystal Structure Determination

description: Related Article: K.Izod, L.J.Bowman, C.Wills, W.Clegg, R.W.Harrington|2009|Dalton Trans.||3340|doi:10.1039/b822054a
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.12685.46563
title: Politics – February 2021
DOI: 10.5517/ccrxz8w
title: CCDC 713039: Experimental Crystal Structure Determination

description: Related Article: K.Izod, L.J.Bowman, C.Wills, W.Clegg, R.W.Harrington|2009|Dalton Trans.||3340|doi:10.1039/b822054a
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrxz9x
title: CCDC 713040: Experimental Crystal Structure Determination

description: Related Article: K.Izod, L.J.Bowman, C.Wills, W.Clegg, R.W.Harrington|2009|Dalton Trans.||3340|doi:10.1039/b822054a
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrr46t
title: CCDC 707426: Experimental Crystal Structure Determination

description: Related Article: S.Grguric-Sipka, I.N.Stepanenko, J.M.Lazic, C.Bartel, M.A.Jakupec, V.B.Arion, B.K.Keppler|2009|Dalton Trans.||3334|doi:10.1039/b822725j
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrr47v
title: CCDC 707427: Experimental Crystal Structure Determination

description: Related Article: S.Grguric-Sipka, I.N.Stepanenko, J.M.Lazic, C.Bartel, M.A.Jakupec, V.B.Arion, B.K.Keppler|2009|Dalton Trans.||3334|doi:10.1039/b822725j
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.11820.39048
title: Achievement
DOI: 10.5517/ccs0syh
title: CCDC 715757: Experimental Crystal Structure Determination

description: Related Article: T.C.Stamatatos, S.P.Perlepes, C.P.Raptopoulou, A.Terzis, C.S.Patrickios, A.J.Tasiopoulos, A.K.Boudalis|2009|Dalton Trans.||3354|doi:10.1039/b900716d
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs0szj
title: CCDC 715758: Experimental Crystal Structure Determination

description: Related Article: T.C.Stamatatos, S.P.Perlepes, C.P.Raptopoulou, A.Terzis, C.S.Patrickios, A.J.Tasiopoulos, A.K.Boudalis|2009|Dalton Trans.||3354|doi:10.1039/b900716d
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.25451.87842
title: Eläkkeet hallinnassa. Julkisyksityinen yhteistyö työeläkekentällä
DOI: 10.13140/rg.2.2.23931.44325
title: What diets and hormones that bring mood and happiness