cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/5szhb-tag26
title: Hn resupplemented with Pi

description: H. neapolitanus cell h3 resupplemented with Pi for 22 hoursKeywords: carboxysomes, partial carboxysomes, internal granules
description: <strong>Tilt Series Date:</strong> 2007-05-17</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -13.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth resupplemented with Pi for 22 hours</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-05-17-2/rawdata/</p>HnPi22h3_190e13um22K_may17_07.mrc,  Tilt Series (Pixel Size 0.961 nm), 1.0 GB  
        
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        HnPi22h3_190e13um22K_may17_07_bin1.rec,  Reconstruction (Pixel Size 0.0 nm), 417.8 MB  
        
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        HnPi22h3_190e13um22K_rec_5ave_bin2.mov,  file associated to 3D Image #3982, 12.0 MB  
        
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DOI: 10.15468/dl.ynd7th
title: Occurrence Download

description: A dataset containing 87886 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Euphorbia exigua"
 ]
}

 The dataset includes 87886 records from 996 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037617-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sk3emu
title: Occurrence Download

description: A dataset containing 236 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dryobates arizonae (Hargitt, 1886)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Year is greater than or equal to 1810",
 "Year is less than or equal to 2019",
 "Month is greater than or equal to April",
 "Month is less than or equal to September",
 "EventDate is not null",
 "Country is United States of America",
 "Geometry POLYGON((-63 22, -63 51, -126 51, -126 22, -63 22))"
 ]
}

 The dataset includes 236 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011090-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25vke7
title: Occurrence Download

description: A dataset containing 439 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is BRA.10.8_2",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 439 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011089-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4qaq36
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Quadrastichus erythrinae Kim, 2004",
 "HasCoordinate is true"
 ]
}

 The dataset includes 38 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011087-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c54t6fg1f
title: MassIVE MSV000097723 - Metabolomic analysis of stems of switchgrass lignin mutants under drought stress
title: This switchgrass project aims to identify metabolic consequences of lignin manipulation and impact on the responses to drought stress in switchgrass. Here we examine elongating internodes of six switchgrass lignin biosynthesis-altered transgenic and mutant and their isogenic wild-type negative segregant lines. Studies in the eudicot, Arabidopsis, have revealed metabolic and transcriptional differences in lignin biosynthesis mutants that appear to relate to feedback mechanisms for plants to compensate for lignin pathway disruption. Specifically, disruption of core lignin biosynthesis gene expression leads to increases in expression of cell wall-related pathways; whereas, disruption of downstream S- and G-lignin specific genes leads to down-regulation of lignin biosynthesis. This experiment allows us to test the generality of this observation in a bioenergy-relevant species. While we generally expect the same patterns, progress revealing differences in grass lignin biosynthesis pathways relative to eudicots suggests that we might also uncover differences. The work (proposal:https://doi.org/10.46936/10.25585/60000468) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.
DOI: 10.25345/c58k7585k
title: MassIVE MSV000097724 - Elucidating the role of bacteriophage lifestyle strategy in Microbially-Mediated Perennial Rhizosphere Nitrogen Transformations
title: Illumination of the interplay between viral community lifestyle strategy (lytic vs. temperate) and the impact of these interactions on microbial population dynamics and metabolic functioning in soil is critical to our understanding of bioenergy crop productivity as well as carbon and nitrogen cycling more broadly. We will leverage an existing set of samples from switchgrass growing on marginal lands that were collected in a 2-week interval time-series over two years with comprehensive data on soil nitrogen pools, plant growth, and existing 16S-focused data on rhizosphere bacteria. We will investigate the role of phage in microbiome dynamics and nitrogen cycling in this system. Ecological and evolutionary trade-offs for bacteria and their bacteriophage are predicted to lead to shifts in viral lifestyle over the growing season and in response to shifts in nutrient availability. In particular, lytic phage are hypothesized to be more dominant during periods of rapid bacterial growth. Furthermore, temperate phage are hypothesized to be triggered into lysis by root exudates or microbial metabolites in soil. Lysis events are predicted to underlie variation in biogeochemical cycling, since the death of bacteria through viral lysis will liberate carbon and nitrogen compounds, contributing to the fluctuations in these compounds that our temporal dataset has documented. The work (proposal:https://doi.org/10.46936/10.25585/60001368) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.
DOI: 10.25345/c5125qn70
title: MassIVE MSV000097725 - Reduced methane emissions in transgenic rice genotypes are associated with altered rhizosphere microbial hydrogen cycling
title: Rice paddies contribute substantially to atmospheric methane (CH4) and these emissions are expected to increase as the need to feed the human population grows. Here, we show that two independent rice genotypes overexpressing genes for PLANT PEPTIDES CONTAINING SULFATED TYROSINE (PSY) reduced cumulative CH4 emissions by 38% (PSY1) and 58% (PSY2) over the growth period compared with controls. Genome-resolved metatranscriptomic data from rhizosphere soils reveal lower ratios of gene activities for CH4 production versus consumption, decrease in activity of H2-producing genes, and increase in bacterial H2 oxidation pathways in the PSY genotypes. Metabolic modeling using metagenomic and metabolomic data predicts elevated levels of H2 oxidation and suppressed H2 production in the PSY rhizosphere. The H2- oxidizing bacteria have more genes for utilization of gluconeogenic acids than H2- producing counterparts, and their activities were likely stimulated by the observed enrichment of gluconeogenic acids (mostly amino acids) in PSY root exudates. Together these results suggest that decreased CH4 emission is due to the reduction of H2 available for hydrogenotrophic methanogenesis. The combination of rice phenotypic characterization, microbiome multi-omic analysis, and metabolic modeling described here provides a powerful strategy to discover the mechanisms by which specific plant genotypes can alter biogeochemical cycles to reduce CH4 emissions. The work (proposal:https://doi.org/10.46936/10.25585/60008481) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.
DOI: 10.15468/dl.fdugp4
title: Occurrence Download

description: A dataset containing 271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Ceroxylon Bonpl. ex DC."
 ]
}

 The dataset includes 271 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000552-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g45ese
title: Occurrence Download

description: A dataset listing the 40654 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "BasisOfRecord is one of (Human Observation)"
 ]
}

 The dataset's 40654 records were derived from 446 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000548-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v9b3kt
title: Occurrence Download

description: A dataset containing 11795 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Malacothamnus Greene"
 ]
}

 The dataset includes 11795 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006063-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4y4ha9
title: Occurrence Download

description: A dataset containing 253396 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scolopax rusticola Linnaeus, 1758",
 "HasCoordinate is true",
 "Year is greater than 1989",
 "Year is less than 2026",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is Absent"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 253396 records from 420 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006058-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2wu6hn
title: Occurrence Download

description: A dataset containing 6070 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Malaisia Blanco"
 ]
}

 The dataset includes 6070 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006064-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ua47b
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((88 31,103 31,103 38,88 38,88 31))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tetraophasis obscurus (J.Verreaux, 1869)"
 ]
}

 The dataset includes 138 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006066-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.twa87m
title: Occurrence Download

description: A dataset containing 2056 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Litchi chinensis Sonn."
 ]
}

 The dataset includes 2056 records from 202 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006067-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8n6mba
title: Occurrence Download

description: A dataset containing 20916 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Serinus canaria (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than 1989",
 "Year is less than 2026",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is Absent"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 20916 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006068-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29095652
title: <b>2025 UNLV Public Records Request: Civil Rights Concerns and Discrimination/non-Title IX Complaints</b>

description: This dataset was obtained via a public records request submitted by Dylan T. Hinton to the University of Nevada, Las Vegas (UNLV) on January 22, 2025. The response was completed by the UNLV Office of Public Affairs on January 27, 2025. It includes administrative data from the Office of Equal Employment and Title IX regarding institutional handling of civil rights and discrimination complaints. The following four metrics are reported:<b>Total number of civil rights concerns and discrimination/non-Title IX complaints reported</b> (Fall 2023–Spring 2025): 520<b>Total number of formal investigations launched</b>: 31<b>Total number of cases closed after administrative review</b>: 413<b>Total number of currently open cases (as of Spring 2025)</b>: 119The data reflect internal case handling practices over the specified academic period and are presented as-is, without interpretation or alteration.This dataset is released into the public domain. Attribution is appreciated but not required. Please cite as: Hinton (2025). <i>UNLV Title IX and Civil Rights Complaint Data (Fall 2023–Spring 2025)</i> [Data set]. Figshare. 10.6084/m9.figshare.29095652
DOI: 10.6084/m9.figshare.29095652.v1
title: <b>2025 UNLV Public Records Request: Civil Rights Concerns and Discrimination/non-Title IX Complaints</b>

description: This dataset was obtained via a public records request submitted by Dylan T. Hinton to the University of Nevada, Las Vegas (UNLV) on January 22, 2025. The response was completed by the UNLV Office of Public Affairs on January 27, 2025. It includes administrative data from the Office of Equal Employment and Title IX regarding institutional handling of civil rights and discrimination complaints. The following four metrics are reported:<b>Total number of civil rights concerns and discrimination/non-Title IX complaints reported</b> (Fall 2023–Spring 2025): 520<b>Total number of formal investigations launched</b>: 31<b>Total number of cases closed after administrative review</b>: 413<b>Total number of currently open cases (as of Spring 2025)</b>: 119The data reflect internal case handling practices over the specified academic period and are presented as-is, without interpretation or alteration.This dataset is released into the public domain. Attribution is appreciated but not required. Please cite as: Hinton (2025). <i>UNLV Title IX and Civil Rights Complaint Data (Fall 2023–Spring 2025)</i> [Data set]. Figshare. 10.6084/m9.figshare.29095652
DOI: 10.15468/dl.v2xth3
title: Occurrence Download

description: A dataset containing 131563 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ceroplastes sinensis Del Guercio, 1900, Panoquina sylvicola (Herrich-Schäffer, 1865), Mycalesis terminus Fabricius, 1775, Spodoptera cilium Guenée, 1852, Calisto zangis Fabricius, 1775, Chionomus havanae (Muir & Giffard, 1924), Phrictopyga nugax Fennah, 1959, Phrictopyga semele Fennah, 1959, Delphacodes spinigera Fennah, 1945, Borbo cinnara (Wallace, 1866), Ameromyzobia aphelinoides Girault, 1916, Bicyclus dorothea, Mycalesis perseus Fabricius, 1775, Potanthus pseudomaesa (Moore, 1881), Oriens goloides (Moore, 1881), Hermeuptychia hermes Fabricius, 1775, Ophiosphaerella narmari (J.Walker & A.M.Sm.bis) H.C.Wetzel, Hulbert & Tisserat, Gaeumannomyces wongoonoo P.Wong, Magnaporthiopsis incrustans (Landsch. & N.Jacks.) J.Luo & N.Zhang, Leptosphaeria cannabina Ferraris & Massa, Dinomys branickii Peters, 1873, Mamestra configurata Walker, 1856, Macrosoma semiermis Prout, 1932, Agrilus xanthonotus Waterhouse, 1889, Corvus culminatus Sykes, 1832, Viverricula indica (É.Geoffroy Saint-Hilaire, 1803), Aphendala unicolor (Moore, 1859), Thosea siamica Holloway, 1987, Odites atmopa Meyrick, 1914, Ladoffa ignota (Walker, 1851), Calodia bicompressa Nielson, 2015, Karachiota azadirachtae Ahmed, 1969, Corythaixoides leucogaster (Ruppell, 1842), Pseudolampis guttata (J.L.LeConte, 1884), Stenopelmus rufinasus Gyllenhal, 1835, Gallinula melanops bogotensis (Chapman, 1914), Elophila nigralbalis Caradja, 1925, Dichomeris serrativittella (Zeller, 1873), Sonia paraplesiana Blanchard, 1979, Stobaera pallida Osborn, 1905, Diabrotica adelpha Harold, 1875, Bucculatrix ivella Busck, 1900, Polistes bellicosus Cresson, 1872, Trirhabda bacharidis (Weber, 1801), Pleuroprucha insulsaria (Guenée, 1857), Polistes metricus Say, 1831, Ancistrocerus campestris (de Saussure, 1853), Libytheana carinenta Cramer, 1779, Perdita octomaculata (Say, 1824), Palpada agrorum (Fabricius, 1787))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 131563 records from 449 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006055-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.69s6q2
title: Occurrence Download

description: A dataset containing 2251 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Serinus pusillus (Pallas, 1811)",
 "HasCoordinate is true",
 "Year is greater than 1989",
 "Year is less than 2026",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is Absent"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 2251 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006069-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wzu4d2
title: Occurrence Download

description: A dataset containing 18992 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Malaxis Sol. ex Sw."
 ]
}

 The dataset includes 18992 records from 464 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006070-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18255618
title: Clytostoma callistegioides (Cham.) Bureau ex Griseb. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:44
DOI: 10.5281/zenodo.18255619
title: Clytostoma callistegioides (Cham.) Bureau ex Griseb. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:44
DOI: 10.15468/dl.md4btg
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"CHN.23.5_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011483-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18255384
title: MNPC training data

description: This dataset contains the training data of the teams participating in the ICPC competition of National University of Mongolia.

Input: - attempts - item_topic_map - items - syllabus_edges - topics

Output: - predictions - student_topic_matrix_X - student_topic_matrix_X_weighted_by_difficulty - W_tilde_dense
DOI: 10.5281/zenodo.18255385
title: MNPC training data

description: This dataset contains the training data of the teams participating in the ICPC competition of National University of Mongolia.

Input: - attempts - item_topic_map - items - syllabus_edges - topics

Output: - predictions - student_topic_matrix_X - student_topic_matrix_X_weighted_by_difficulty - W_tilde_dense
DOI: 10.6084/m9.figshare.31073158
title: <b>Supplementary Material 1</b>: Parenclitic deviation (δ) across healthy and clinical groups. δ represents the deviation of individual data points from a reference line describing the linear relationship between mean SpO₂ and SpO₂ sample entropy.

description: Parenclitic deviation (δ) across healthy and clinical groups. δ represents the deviation of individual data points from a reference line describing the linear relationship between mean SpO₂ and SpO₂ sample entropy. The raw data used to generate Figure 3 of the paper (entitled "<b>Interpreting Peripheral Oxygen Saturation Variability in Critical Illness: A Directional Framework Adjusted for Hypoxia Severity</b>") show individual δ values for healthy individuals as well as patients with sepsis, chronic obstructive pulmonary disease (COPD), acute liver failure (ALF), and cirrhosis.