cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28748696.v4
title: LLaMAC: Low-cost Biosignal Sensor based Large Multimodal Dataset for Affective Computing

description: This dataset consists of biosignals such as electroencephalogram (EEG), electrodermal activity (EDA), photoplethysmogram (PPG), skin temperature (SKT), and respiration (RESP), and questionnaire results on continuous domain emotion (valence, arousal, and dominance), discrete domain emotion (type and intensity of emotion: neutral, fun, sadness, angry, and fear), liking, and familiarity. This dataset has the characteristics of using low-cost biosignal sensors, conducting questionnaires on continuous and discrete domain emotions, participating in more than 100 participants, and conducting questionnaires on liking and familiarity. This dataset can be used to predict continuous and discrete domain emotions based on biosignals, analyze correlations between continuous and discrete domain emotions, predict liking based on biosignals, and identify differences in biosignals according to familiarity and predict emotions or liking using them.
DOI: 10.15468/dl.8kvqy8
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-104.69325 20.77511,-105.22959 21.12756,-105.94982 20.82108,-106.01111 19.8761,-104.6013 19.98337,-104.69325 20.77511))",
 "TaxonKey is Dioon tomasellii"
 ]
}

 The dataset includes 40 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027300-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.thwubr
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rattus rattus",
 "Country is Grenada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027301-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j52bgh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rattus rattus",
 "Country is Iceland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027302-250811113504898/datasets/export for details.
DOI: 10.15468/dl.p6svqa
title: Occurrence Download

description: A dataset containing 394 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Fejervarya multistriata",
 "Year 1970-2025"
 ]
}

 The dataset includes 394 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027303-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cc7zqj
title: Occurrence Download

description: A dataset containing 1454 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rattus rattus",
 "Country is Indonesia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1454 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027304-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hnbfpd
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rattus rattus",
 "Country is Iran (Islamic Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027305-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16879800
title: Eigenstate control of plasmon wavepackets with electron-channel blockade

description: This is the dataset of the paper entitled "Eigenstate conrol of plasmon wavepackets with electron-channel blockade" by Takada et al.
DOI: 10.5281/zenodo.16879799
title: Eigenstate control of plasmon wavepackets with electron-channel blockade

description: This is the dataset of the paper entitled "Eigenstate conrol of plasmon wavepackets with electron-channel blockade" by Takada et al.
DOI: 10.25550/8r-nm0r
title: Identification of lymphatic vessels in skull periosteum but not bone marrow reveals skull channel heterogeneity

description: We identified lymphatic vessels at the skull periosteum and found no evidence of lymphatic vessels in the cortical bones or skull bone marrow, where the lymphatic marker VEGFR3 labels blood vessels. Skull periosteum channels to the upper skin are found to occur more frequently in parietal bone than interparietal bone, whereas bone marrow is found more often in interparietal bone than parietal bone. Despite skull bone marrow expansion during aging, skull channels are significantly reduced, suggesting of aging-dependent uncoupling between skull channels and bone marrow. Together, our findings show lymphatic vessels are present in the skull periosteum but absent in bone marrow, with channel and bone marrow heterogeneity varying by skull region and age.
DOI: 10.15468/dl.qtu8f7
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crotalus catalinensis"
 ]
}

 The dataset includes 112 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027306-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/4d4154e8f8784e2eb60afd7aa3061ba3
title: Shrub Edge Community and Microclimate Data from Hog Island, VA 2021-2022

description: This data was collected from 2021-2023 on Hog Island, VA in the swale along the south end of the island where there is active shrub expansion of Morella cerifera (Southern wax myrtle). The microclimate data includes water table depth, soil moisture, soil nutrients, PAR (Photosynthetically active radiation), and temperature in (℃). These data were collected along the shrub edge and in the open grassland plots (n=10). The vegetation community data includes percent cover, stem density, and height measured in a 0.25 m2 plot. The 4 species identified to dominate in both communities were: Andropogon virginicus, Spartina patens, Panicum amarum, and Solidago sempervirens. These species were used for trait analyses. The trait data includes: specific leaf area (SLA), stem specific density (SSD), leaf dry matter content (LDMC), and leaf nutrients.
DOI: 10.5281/zenodo.16916569
title: Geospatial and AHP Analysis for Solar-Powered Aerator Site Selection Based on Socio-Economic Factors in Aquaculture: A Case Study in Purworejo Regency
DOI: 10.5281/zenodo.16916570
title: Geospatial and AHP Analysis for Solar-Powered Aerator Site Selection Based on Socio-Economic Factors in Aquaculture: A Case Study in Purworejo Regency
DOI: 10.57967/hf/6302
title: MotiL
DOI: 10.15468/dl.g9qzt3
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rattus rattus",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027307-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cgmutn
title: Occurrence Download

description: A dataset containing 236 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rattus rattus",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 236 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027308-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.txp5hr
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-104.69325 20.77511,-105.22959 21.12756,-105.94982 20.82108,-106.01111 19.8761,-104.6013 19.98337,-104.69325 20.77511))",
 "TaxonKey is Dioon tomasellii"
 ]
}

 The dataset includes 40 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027309-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29665022.v1
title: Two complete telomere-to-telomere <i>Medicago</i> genomes

description: The genome was completely assembled into telomere-to-telomere (T2T) using a hybrid approach incorporating Hi-C scaffolding, PacBio HiFi reads, and Oxford Nanopore ultra-long sequencing technologies
DOI: 10.15468/dl.kagucu
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rattus rattus",
 "Country is Jamaica",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027310-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4yy9wv
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rattus rattus",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 39 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027311-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fvxbds
title: Occurrence Download

description: A dataset containing 973 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Human Observation, Machine Observation)",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mazama rufina",
 "Year 1950-2025"
 ]
}

 The dataset includes 973 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027312-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29955986
title: Sugarcane production

description: The sugarcane production and productivity
DOI: 10.6084/m9.figshare.29955986.v1
title: Sugarcane production

description: The sugarcane production and productivity
DOI: 10.15468/dl.z32v8c
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rattus rattus",
 "Country is Kiribati",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027314-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qubaw5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rattus rattus",
 "Country is Jordan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027313-250811113504898/datasets/export for details.
DOI: 10.57967/hf/6303
title: KPoEM
DOI: 10.15468/dl.b6ygxn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rattus rattus",
 "Country is Latvia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027317-250811113504898/datasets/export for details.
DOI: 10.15468/dl.qshj3w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rattus rattus",
 "Country is Kuwait",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027316-250811113504898/datasets/export for details.
DOI: 10.15468/dl.9u3yab
title: Occurrence Download

description: A dataset containing 1733 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Herpailurus yagouaroundi"
 ]
}

 The dataset includes 1733 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027318-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.tf083ng
title: Data from: Allometry and integration does not strongly constrain beak shape evolution in large-billed (Corvus macrorhynchos) and carrion crows (C. corone)

description: A recent geometric morphometric study on certain landbird lineages
 revealed that a major part of the variation in beak shape is accounted for
 by skull size and cranial shape. The study interpreted this result as
 evidence for the presence of strong evolutionary constraints that severely
 prevented beak shape from evolving substantially away from predictions of
 allometry and morphological integration. However, there is another
 overlooked but similarly plausible explanation for this result: the reason
 why beak shape does not depart much from predictions might simply be that
 selection pressures favoring such changes in shape are themselves rare.
 Here, to evaluate the intensity of evolutionary constraints on avian beak
 shape more appropriately, we selected Large-billed (Corvus macrorhynchos)
 and Carrion Crows (C. corone) as study objects. These landbird species
 seem to experience selection pressures favoring a departure from an
 allometric trajectory. A landmark-based geometric morphometrics approach
 using three-dimensional reconstructions of CT scan images revealed that
 only 45.4% of the total shape variation was explained by allometry and
 beak–braincase integration. This suggests that when a selection pressure
 acts in a different direction to allometry and integration, avian beak
 shape can react to it and evolve flexibly. As traditionally considered,
 evolutionary constraints on avian beak shape might not be all that strong.
description: landmark and guidepoint
 datalandmark_and_guidepoint_data.zip
DOI: 10.5061/dryad.n49qg
title: Data from: The effects of archipelago spatial structure on island diversity and endemism: predictions from a spatially-structured neutral model

description: Islands are particularly suited to testing hypotheses about the ecological
 and evolutionary mechanisms underpinning community assembly. Yet the
 complex spatial arrangements of real island systems have received little
 attention from both empirical studies and theoretical models. Here, we
 investigate the extent to which the spatial structure of archipelagos
 affects species diversity and endemism. We start by proposing a new
 spatially-structured neutral model that explicitly considers archipelago
 structure, and then investigate its predictions under a diversity of
 scenarios. Our results suggest that considering the spatial structure of
 archipelagos is crucial to understanding their diversity and endemism,
 with structured island systems acting both as “museums” and “cradles” of
 biodiversity. These dynamics of diversification may change the
 traditionally expected pattern of decrease in species richness with
 distance from the mainland, even potentially leading to increasing
 patterns for taxa with high speciation rates in archipelagos off
 species-poor continental areas. Our results also predict that, within
 spatially-structured archipelagos, metapopulation dynamics and
 evolutionary processes can generate higher diversity on islands more
 centrally placed than at the periphery. We derive from our results a set
 of theoretical predictions, potentially testable with empirical data.
description: Codes of the spatially
 structured and unstructured neutral modelsWe provide here the
 algorithms used to model neutral dynamics on spatially-structured and
 unstructured archipelagos, as introduced in the main text and Supporting
 Information 3. These algorithms are coded in Java language, and their
 structure and use is explained in the file Readme.txt.Codes_Gascuel_etal_2016_Evolution.zipInput filesWe provide here the files used as inputs to simulate neutral dynamics on spatially structured and unstructured archipelagos. Details on the structure of these inputs are given as comments in the algorithms, and simple exemples are provided with the Codes of the models. This data include: the carrying capacities on islands/archipelagos (CarryingCapacities_...txt), the species abundance distributions of the mainland species (Distri_mainland...txt), the matrices of connectivity (Mcon_...txt), and the sampling frequencies on islands/archipelagos (SamplingFrequency...txt).Input_files.zip
DOI: 10.5061/dryad.r6j80
title: Data from: Estimation of individual growth trajectories when repeated measures are missing

description: Individuals in a population vary in their growth due to hidden and
 observed factors such as age, genetics, environment, disease, and
 carryover effects from past environments. Because size affects fitness,
 growth trajectories scale up to affect population dynamics. However, it
 can be difficult to estimate growth in data from wild populations with
 missing observations and observation error. Previous work has shown that
 linear mixed models (LMMs) underestimate hidden individual heterogeneity
 when over 25% of repeated measures are missing. Here we demonstrate a
 flexible and robust way to model growth trajectories. We show that
 state-space models (SSMs), fit using R package growmod, are far less
 biased than LMMs when fit to simulated datasets with missing repeated
 measures and observation error. This method is much faster than MCMC
 methods, allowing more models to be tested in a shorter time. For the
 scenarios we simulated, SSMs gave estimates with little bias when up to
 87.5 % of repeated measures were missing. We use this method to quantify
 growth of Soay sheep, using data from a long-term mark-recapture study,
 and demonstrate that growth decreased with age, population density,
 weather conditions, and when individuals are reproductive. The method
 improves our ability to quantify how growth varies among individuals in
 response to their attributes and the environments they experience, with
 particular relevance for wild populations.
description: sheep
 massesPlease see README.txt
 for a description and information about reusing the
 data.sheep
 sizes.Rdatasheep masses with birth
 covariatesPlease see README.txt
 for a description and information about reusing the
 data.sheep
 sizes with mum.Rdata
DOI: 10.5061/dryad.8h06d
title: Data from: Contact zone dynamics during early stages of speciation in a chorus frog (Pseudacris crucifer)

description: Characterizing the genetic and behavioural consequences of contact between
 previously geographically isolated lineages provides insights into the
 mechanisms underlying diversification and ultimately speciation. The
 spring peeper (Pseudacris crucifer) is a widespread Nearctic chorus frog
 with six divergent mitochondrial DNA (mtDNA) lineages, many of which came
 into secondary contact during the Holocene. We examined genetics,
 morphology, advertisement calls and female preference for two lineages
 that began diverging in allopatry in the Pliocene and now overlap in
 southwestern Ontario, Canada. We found non-coincident clines in mtDNA and
 nuclear DNA, mirroring directionality of premating isolation barriers. We
 also found divergence in a range of traits between these two lineages,
 displacement in male call attributes and female preference for calls of
 their natal lineage in sympatry. Hybrids were morphologically distinct
 from both parental lineages, but hybrid male calls were acoustically
 intermediate. Female hybrids showed asymmetrical preference for Eastern
 male calls. These results considered together provide evidence of either
 unidirectional hybridization or selection against hybrids, potentially
 implying reproductive character displacement. Our work demonstrates the
 utility of integrated, multi-character approaches to understanding the
 processes of divergence and the nature of speciation.
description: Genotypic_Acoustic_Morphological_Preference_Data_PseudacrisThis file contains 5 worksheets: worksheet 1 describes identifiers used throughout data set; worksheet 2 (Genotypes (G)) encompasses 14 columns of microsatellite and mtDNA data; worksheet 3 (Call (C)) encompasses 21 columns of mean acoustic data; worksheet 4 (Morphology (M)) encompasses 11 columns of mean morphological measurements; worksheet 5 (Female Preference (F)) encompasses 6 columns of phonotaxis experimental results. For more detail refer to Methods and Table 1.Stewart et al Heredity 2015 DRYAD.xlsx
DOI: 10.5061/dryad.111
title: Data from: Testing Phylogenetic Methods with Tree Congruence: Phylogenetic Analysis of Polymorphic Morphological Characters in Phrynosomatid Lizards

description: Congruence between trees from separately analyzed data sets is a powerful
 approach for assessing the performance of phylogenetic methods but has
 been applied primarily to the analysis of molecular data. In this study,
 different methods for treating polymorphic characters were compared using
 morphological data from phrynosomatid lizards. Clades were identified that
 are both traditionally recognized and supported by recent molecular
 analyses, and species were sampled from these clades to make three RknownS
 phylogenies of eight species each. The ability of different methods to
 estimate these "known" phylogenies with a finite sample of
 characters was tested. The phylogenetic methods included eight parsimony
 methods for coding polymorphism, three distance approaches (UPGMA,
 neighbor joining, and Fitch-Margoliash) applied to two genetic distance
 measures (Nei's and the modified Cavalli-Sforza and Edwards chord
 distance), and continuous maximum likelihood. The effects of excluding
 polymorphic characters and character weighting (a priori and successive)
 were also tested. Among the different parsimony approaches, the fixed-only
 method (excluding all polymorphic characters) performed relatively poorly,
 whereas the frequency method (including all polymorphic characters)
 performed relatively well. However, frequency-based distance methods
 consistently outperformed parsimony, especially with a small sample size
 (n= 1 individual per species). These results agree closely with those from
 recent simulation studies of polymorphic data and argue against the common
 practices of excluding polymorphic morphological characters, ignoring the
 frequencies of traits within species, and the exclusive use of parsimony
 to analyze morphological data.
description: Wiens 40 Taxon
 Matrix15Jmatrix1.txtWiens Tree I Matrix15Jmatrix2.txtWiens Tree II Matrix15Jmatrix3.txtWiens Tree III Matrix15Jmatrix4.txt