cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0900649.10fu
title: SH0900649.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0900650.10fu
title: SH0900650.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.86pj8k
title: Occurrence Download

description: A dataset containing 116047 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Marantaceae"
 ]
}

 The dataset includes 116047 records from 859 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097283-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.22623421.v1
title: Additional file 6 of Identification of fertility restoration candidate genes from a restorer line R186 for Gossypium harknessii cytoplasmic male sterile cotton

description: Additional file 6. Supplemental table 9
DOI: 10.6084/m9.figshare.22623427.v1
title: Additional file 8 of Identification of fertility restoration candidate genes from a restorer line R186 for Gossypium harknessii cytoplasmic male sterile cotton

description: Additional file 8. Supplemental table 11
DOI: 10.6084/m9.figshare.22623427
title: Additional file 8 of Identification of fertility restoration candidate genes from a restorer line R186 for Gossypium harknessii cytoplasmic male sterile cotton

description: Additional file 8. Supplemental table 11
DOI: 10.6084/m9.figshare.7943552.v1
title: Additional file 1: of Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis

description: Table S1. Summary of GWAS data. Table S2. SNP based heritability and genomic inflation factor estimated by LDSC. Table S3. Evaluation of genetic correlation between COPD and CVD related metabolic traits. Table S4. Partitioned genetic correlation between COPD and 3 cardiac traits. Table S5. Local genetic covariance analysis between COPD and RHR (only P &lt; 0.01 shown in this table). Table S6. Local genetic coveriance analysis between COPD and HBP (only P &lt; 0.01 shown in this table). Table S7. Local genetic covariance analysis between COPD and CAD. Table S8. Genome-wide significant loci by cross-trait meta-analysis at sentinel SNPs. Table S9. Genome-wide significant loci by cross-trait meta-analysis at sentinel SNPs. Table S10. Genome-wide significant loci by cross-trait meta-analysis at sentinel SNPs. Table S11. Detailed annotation of cross-trait meta-analysis genome-wide significant SNPs. Table S12. Fine-mapping credible set analysis for 21 top loci. Table S13. Fine-mapping credible set analysis for 22 top loci. Table S14. Fine-mapping credible set analysis for 3 top loci. Table S15. Missense variants in 99% credible set. Table S16. Missense variants in 99% credible-set. Table S17. Missense variantsin 99% credible-set. Table S18. GO biological process pathway analysis for COPD and RHR. Table S19. GO biological process pathway analysis for COPD and HBP. Table S20. GO biological process pathway analysis for COPD and CAD. Table S21. Significant overlap transcriptome-wide association analysis results. Table S22. Characterization of trait-specific association for the smoking related. Table S23. Mendelian randomization analysis between COPD and cardiac traits. (XLSX 240 kb)
DOI: 10.6084/m9.figshare.22623412
title: Additional file 3 of Identification of fertility restoration candidate genes from a restorer line R186 for Gossypium harknessii cytoplasmic male sterile cotton

description: Additional file 3. Supplemental table 1-4
DOI: 10.6084/m9.figshare.22623493
title: Additional file 2 of BIND&MODIFY: a long-range method for single-molecule mapping of chromatin modifications in eukaryotes

description: Additional file 2. Data Table for all data generated from this study and external datasets  used.
DOI: 10.6084/m9.figshare.22623415.v1
title: Additional file 4 of Identification of fertility restoration candidate genes from a restorer line R186 for Gossypium harknessii cytoplasmic male sterile cotton

description: Additional file 4. Supplemental table 5-6
DOI: 10.6084/m9.figshare.14234812
title: Additional file 9 of The Bdkrb2 gene family provides a novel view of viviparity adaptation in Sebastes schlegelii

description: Additional file 9. Table S3. Expression levels (TPM; Transcripts Per Million) of metioned genes in different tissues of black rockfish. The prefix C indicated for connective tissue rich in blood vessels covering the egg membrane and E for embryos and O for ovarian wall. Arabic numerals represent different stages. 1, prefertilization; 2, 1-cell; 3, 8-cells; 4, 16-cells; 5, gastrula stage; 6, 8-somites stage; 7, tailbud stage; 8, pre-hatching; 9, hatching.
DOI: 10.6084/m9.figshare.22620572.v1
title: Additional file 4 of Expression signature and molecular basis of CDH11 in OSCC detected by a combination of multiple methods

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.22623424.v1
title: Additional file 7 of Identification of fertility restoration candidate genes from a restorer line R186 for Gossypium harknessii cytoplasmic male sterile cotton

description: Additional file 7. Supplemental table 10
DOI: 10.6084/m9.figshare.22623493.v1
title: Additional file 2 of BIND&MODIFY: a long-range method for single-molecule mapping of chromatin modifications in eukaryotes

description: Additional file 2. Data Table for all data generated from this study and external datasets  used.
DOI: 10.6084/m9.figshare.12134781
title: Additional file 10 of Exploring the key microbial changes in the rhizosphere that affect the occurrence of tobacco root-knot nematodes

description: Additional file 10: Table S9. Difference fungi between Pl and P_D.
DOI: 10.6084/m9.figshare.22623424
title: Additional file 7 of Identification of fertility restoration candidate genes from a restorer line R186 for Gossypium harknessii cytoplasmic male sterile cotton

description: Additional file 7. Supplemental table 10
DOI: 10.6084/m9.figshare.7943450
title: Additional file 1: of Rapid evolution of a retro-transposable hotspot of ovine genome underlies the alteration of BMP2 expression and development of fat tails

description: Table S1. List of 30-kb windows on MGS genome with top 0.5% high-LSBL values. Table S2. Information of four genotyped SNPs in association study. Table S3. Genotypes and phenotypes of 116 crossbreeding sheep. Table S4. Linear regression models for genotype-to-phenotype association test. Table S5. Primer sequences in the present study. Table 6. Neutral test for retro-PPP1CC gene. (XLS 162 kb)
DOI: 10.6084/m9.figshare.11479464
title: MOESM2 of Application of LpxC enzyme inhibitor to inhibit some fast-growing bacteria in human gut bacterial culturomics

description: Additional file 2: Table S2 Taxonomic information of 102 species of bacteria.
DOI: 10.6084/m9.figshare.11479464.v1
title: MOESM2 of Application of LpxC enzyme inhibitor to inhibit some fast-growing bacteria in human gut bacterial culturomics

description: Additional file 2: Table S2 Taxonomic information of 102 species of bacteria.
DOI: 10.6084/m9.figshare.22623421
title: Additional file 6 of Identification of fertility restoration candidate genes from a restorer line R186 for Gossypium harknessii cytoplasmic male sterile cotton

description: Additional file 6. Supplemental table 9
DOI: 10.6084/m9.figshare.22620580.v1
title: Additional file 1 of Comparative analysis of complete Artemisia subgenus Seriphidium (Asteraceae: Anthemideae) chloroplast genomes: insights into structural divergence and phylogenetic relationships

description: Additional file 1: Table S1. GenBank information for species derived from the NCBI database used in the phylogenetic analysis. Table S2. List of annotated genes in the subg. Seriphidium chloroplast genomes. Table S3. Raw data from the analysis of simple sequence repeats in the subg. Seriphidium. Table S4. Raw data from the analysis of long dispersed repeats in the subg. Seriphidium. Table S5. Raw values for each variant region of the subg. Seriphidium chloroplast genome used for hypervariable regions analysis.
DOI: 10.6084/m9.figshare.12134790.v1
title: Additional file 3 of Exploring the key microbial changes in the rhizosphere that affect the occurrence of tobacco root-knot nematodes

description: Additional file 3: Table S3. Diseased and healthy soil differential fungi.
DOI: 10.6084/m9.figshare.7936469
title: Additional file 1: of High accumulation of Îł-linolenic acid and Stearidonic acid in transgenic Perilla (Perilla frutescens var. frutescens) seeds

description: Table S1. Primers used in this study. Nucleotide symbols are as follows: Y, C/T; R, G/A; W, A/T; D, G/A/T; N, A/T/G/C. Table S2. Segregation ratio of D6DES T1 perilla plants treated with Basta. Table S3. Genotyping of D6DES T2 perilla plants treatment with Basta. (ZIP 3970 kb)
DOI: 10.6084/m9.figshare.10045958
title: Preparative isolation and purification of B-type fumonisins by using macroporous resin column and high-speed countercurrent chromatography

description: B-type fumonisins (FBs) are water-soluble mycotoxins produced by <i>Fusarium</i> species, which are mainly found in maize products and threaten food safety. Toxicological studies and quantitative determinations of fumonisins require large amounts of pure toxins, and their high prices limit progress in FBs research. In this study, we used a macroporous resin column combined with high-speed countercurrent chromatography to separate large quantities of FBs. A fermented rice culture was extracted with 75% methanol. The dynamic adsorption capacity of FBs on XAD-2 resin was 27.5 mg/g resin at 25°C, pH 4.0, and then the FBs were desorbed with 60% methanol. The crude FBs were further purified using a biphasic system consisting of n-heptane/n-butanol/methanol/water (2:4:1:4, v/v/v/v). The method yielded 1.55 g of FB1 and 0.55 g of FB3 with purities of 96.8% and 95.6%, respectively, from 1 kg of rice culture, and the final overall yield of FBs was 74.8%.
DOI: 10.6084/m9.figshare.10045958.v1
title: Preparative isolation and purification of B-type fumonisins by using macroporous resin column and high-speed countercurrent chromatography

description: B-type fumonisins (FBs) are water-soluble mycotoxins produced by <i>Fusarium</i> species, which are mainly found in maize products and threaten food safety. Toxicological studies and quantitative determinations of fumonisins require large amounts of pure toxins, and their high prices limit progress in FBs research. In this study, we used a macroporous resin column combined with high-speed countercurrent chromatography to separate large quantities of FBs. A fermented rice culture was extracted with 75% methanol. The dynamic adsorption capacity of FBs on XAD-2 resin was 27.5 mg/g resin at 25°C, pH 4.0, and then the FBs were desorbed with 60% methanol. The crude FBs were further purified using a biphasic system consisting of n-heptane/n-butanol/methanol/water (2:4:1:4, v/v/v/v). The method yielded 1.55 g of FB1 and 0.55 g of FB3 with purities of 96.8% and 95.6%, respectively, from 1 kg of rice culture, and the final overall yield of FBs was 74.8%.
DOI: 10.6084/m9.figshare.7936475
title: Additional file 2: of High accumulation of γ-linolenic acid and Stearidonic acid in transgenic Perilla (Perilla frutescens var. frutescens) seeds

description: Figure S1. Vector constructs containing the PcD6DES gene. (A) Vector for yeast transformation. PGAL1 and CYS TT represent galactose-inducible GAL1 promoter and CYC1 transcriptional terminator, respectively. URA encodes a biosynthetic enzyme of uracil, as a marker gene for yeast selection. AmpR encodes β-lactamase that inactivates antibiotics ampicillin, as a marker gene for E. coli selection. (B) Vector for plant transformation. pCAMBIA3300 was used as a backbone vector. Pvic and Tocs indicate vicilin promoter and octopine synthase III terminator, respectively. LB and RB represent left border and right border, respectively. Each box represents a gene expression cassette. B, BamHI; C, ClaI; H3, HindIII; K, KpnI; N, NotI; P, PstI; R1, EcoRI; Sc, SacI; X, XbaI, Xh, XhoI. Figure S2. The predicted transmembrane domains of fatty acid desaturases including (A) Phytophthora citrophthora D6DES, (B) evening primrose (Oenothera biennis) D6DES (GenBank accession No. EU416278) and (C) Perilla frutescens var. frutescens FAD2 (GenBank accession No. KP070823) by TOPCONS. Figure S3. The expression from PcD6DES gene in RNA level from S. cerevisiae. RT-PCR from total RNAs of PcD6DES yeast. pYES2 is yeast cells harboring a blank vector as an negative control. PcD6DES is yeast cells carrying pYES2-PcD6DES. ScAct1 is a reference gene from S. cerevisiae actin gene (GenBank accession No. L00026). – and + indicate non-induction and induction, respectively. The induction method of yeast was described in Methods section. M, 1 kb DNA ladder. Figure S4. TLC analysis of lipids extracted from perilla mature seeds. The lipids were developed and visualized under the ultra violet after the primuline spraying. The spots corresponding neutral lipids (TAG and DAG) and polar lipids were scraped off and the fatty acid composition was analyzed with GC. The method using this experiment is described in the ‘Thin layer chromatography (TLC)’ subsection of Methods section (ZIP 537 kb)
DOI: 10.6084/m9.figshare.7936481.v1
title: Additional file 1: of Genome-wide identification and abiotic stress-responsive pattern of heat shock transcription factor family in Triticum aestivum L.

description: Table S1. Sequences and transcript IDs of novel TaHsfs. (XLSX 73 kb)
DOI: 10.6084/m9.figshare.7936493
title: Additional file 3: of Genome-wide identification and abiotic stress-responsive pattern of heat shock transcription factor family in Triticum aestivum L.

description: Table S3. Orthologous gene pairs of Hsf family of Triticum aestivum, Oryza sativa, Zea mays and Arabidopsis thaliana. (XLS 25 kb)
DOI: 10.6084/m9.figshare.22104764
title: Pharmacokinetics, pharmacodynamics, safety and immunogenicity of Gerilimzumab (GB224), a recombinant humanized interleukin-6 monoclonal antibody, in healthy Chinese adults: A randomized controlled dose-escalation study

description: https://www.tandfonline.com/doi/full/10.1080/13543784.2023.2178894
DOI: 10.6084/m9.figshare.7936511
title: Additional file 6: of Genome-wide identification and abiotic stress-responsive pattern of heat shock transcription factor family in Triticum aestivum L.

description: Table S6. Heat map of the expression of TaHsfs in the leaves and roots using five different treatments. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.7936511.v1
title: Additional file 6: of Genome-wide identification and abiotic stress-responsive pattern of heat shock transcription factor family in Triticum aestivum L.

description: Table S6. Heat map of the expression of TaHsfs in the leaves and roots using five different treatments. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.14234917.v1
title: Additional file 3 of ZnO nanoparticle-based seed priming modulates early growth and enhances physio-biochemical and metabolic profiles of fragrant rice against cadmium toxicity

description: Additional file 5:Table S4. Fold change of the detected metabolites involved in the metabolic pathways.
DOI: 10.6084/m9.figshare.14234911.v1
title: Additional file 1 of ZnO nanoparticle-based seed priming modulates early growth and enhances physio-biochemical and metabolic profiles of fragrant rice against cadmium toxicity

description: Additional file 3:Table S2. Metabolites detected in the rice varieties.
DOI: 10.6084/m9.figshare.22623638.v1
title: Additional file 2 of Isorhynchophylline inhibits inflammatory responses in endothelial cells and macrophages through the NF-κB/NLRP3 signaling pathway

description: Additional file 2.
DOI: 10.6084/m9.figshare.22623544.v1
title: Additional file 3 of Large-scale analysis of putative Euphorbiaceae R2R3-MYB transcription factors identifies a MYB involved in seed oil biosynthesis

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.22623547
title: Additional file 4 of Large-scale analysis of putative Euphorbiaceae R2R3-MYB transcription factors identifies a MYB involved in seed oil biosynthesis

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.22623550.v1
title: Additional file 5 of Large-scale analysis of putative Euphorbiaceae R2R3-MYB transcription factors identifies a MYB involved in seed oil biosynthesis

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.22623541.v1
title: Additional file 2 of Large-scale analysis of putative Euphorbiaceae R2R3-MYB transcription factors identifies a MYB involved in seed oil biosynthesis

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.13710745
title: Additional file 5 of Integrated transcriptome and proteome analyses identify novel regulatory network of nucleus pulposus cells in intervertebral disc degeneration

description: Additional file 5. GO and pathway analysis of differentially expressed protein and mRNA in IDD. Contains four sheet detailing the pathway and gene ontology analysis results of differentially expressed Protein and mRNA in IDD.
DOI: 10.15156/bio/sh1365126.08fu
title: SH1365126.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1365127.08fu
title: SH1365127.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2045396.08fu
title: SH2045396.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2045397.08fu
title: SH2045397.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.