cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.884873
title: Wpged Xpd 3Fs, 4.96 Kev Pulses European Xfel Sase1 Spb-Sfx

description: Propagated pulses of 3 fs duration and 4.96 keV photon energy.

Input (XFEL source): (per XPD https://in.xfel.eu/xpd) [https://dx.doi.org/10.5281/zenodo.855301]

Simulation code: WPG
description: {"references": ["https://doi.org/10.1107/S2052252517009496", "https://dx.doi.org/10.5281/zenodo.855301"]}
DOI: 10.5281/zenodo.884872
title: Wpged Xpd 3Fs, 4.96 Kev Pulses European Xfel Sase1 Spb-Sfx

description: Propagated pulses of 3 fs duration and 4.96 keV photon energy.

Input (XFEL source): (per XPD https://in.xfel.eu/xpd) [https://dx.doi.org/10.5281/zenodo.855301]

Simulation code: WPG
description: {"references": ["https://doi.org/10.1107/S2052252517009496", "https://dx.doi.org/10.5281/zenodo.855301"]}
DOI: 10.17632/j6sdxytt46.6
title: 3D reconstruction data used to perform selection task

description: In the selection task, participants had to select the region of interest (a specified vessel segment) as explained in the "Experiment_description.pdf" file. They were asked to manipulate (i.e., translate, rotate and scale) a 3D box widget, initially positioned such that the region of interest covered all vessel structures displayed on the screen. Three 3D model files ("level1.vtk", "level2.vtk" and "level.3 vtk") were used to define three complexity levels of the selection task: Level 1 (simple) — one vessel; Level 2 (average) — two closely located vessels; Level 3 (complex) — three vessels, where two vessels are located close to each other. This project was funded by the University of Amsterdam and NWO.
DOI: 10.17632/trpc5kjpn5.3
title: PEBP1 Wardens Ferroptosis by Enabling Lipoxygenase Generation of Lipid Death Signals

description: MALDI-MS imaging raw data for Supplemental Figures of Wenzel et al, "PEBP1 Wardens Ferroptosis by Enabling Lipoxygenase Generation of Lipid Death Signals." The data is readable with Bruker Daltonics FlexImaging software (www.bruker.com) or MSiReader sofware (www.msireader.com).
DOI: 10.5523/bris.2v3sw3xjkaum724prs1ziow4u0
title: Nuclei and nucleoli in embryo-like fossils from the Ediacaran Weng’an Biota
title: Synchrotron tomographic data of nuclei and nucleoli embryo-like fossils from the Ediacaran Weng’an biota

description: Three dimensional synchrotron x-ray tomographic (SRXTM) datasets and analyses of nuclei and nucleoli in embryo-like fossils from the Ediacaran Weng’an Biota.
DOI: 10.17632/4nh2ts7rdc.1
title: Methylmercury reduces migratory capability, inhibits proliferation, and induces oxidative stress in an immortalized human trophoblast cell line

description: Raw data from a migration scratch assay, a proliferation assay, a viability assay, and RT-PCR using first trimester immortalized human trophoblast cells (HTR8/SV-neo) that were treated with methylmercury at 0, 0.01, 0.1 and 1 ug/mL.
DOI: 10.5517/ccdc.csd.cc1pps49
title: CCDC 1570061: Experimental Crystal Structure Determination

description: Related Article: Nikolaos Tsoureas, F. Geoffrey N. Cloke|2017|J.Organomet.Chem.|857|25|doi:10.1016/j.jorganchem.2017.08.019
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pps5b
title: CCDC 1570062: Experimental Crystal Structure Determination

description: Related Article: Nikolaos Tsoureas, F. Geoffrey N. Cloke|2017|J.Organomet.Chem.|857|25|doi:10.1016/j.jorganchem.2017.08.019
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pps6c
title: CCDC 1570063: Experimental Crystal Structure Determination

description: Related Article: Nikolaos Tsoureas, F. Geoffrey N. Cloke|2017|J.Organomet.Chem.|857|25|doi:10.1016/j.jorganchem.2017.08.019
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pps7d
title: CCDC 1570064: Experimental Crystal Structure Determination

description: Related Article: Nikolaos Tsoureas, F. Geoffrey N. Cloke|2017|J.Organomet.Chem.|857|25|doi:10.1016/j.jorganchem.2017.08.019
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pps8f
title: CCDC 1570065: Experimental Crystal Structure Determination

description: Related Article: Nikolaos Tsoureas, F. Geoffrey N. Cloke|2017|J.Organomet.Chem.|857|25|doi:10.1016/j.jorganchem.2017.08.019
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/2mgx2xzzpk.1
title: BASIC Composite Ozone Time-Series Data

description: BAyeSian Integrated and Consolidated (BASIC) composite ozone time-series dataset built from a Bayesian joint self-calibration analysis of multiple composite ozone datasets. The construction of the BASIC composite is described in detail in the paper: Ball et al, Reconciling differences in stratospheric ozone composites, ACP (2017). If you use the BASIC dataset, please cite both the DOI for this data page and Ball et al 2017 (ACP). The netCDF file includes variables for time, pressure and latitude giving the Julian dates* and pressure and latitude grid respectively. The ozone time-series data is given in the variable o3[time, pressure, latitude] and associated (time-varying) 1-sigma uncertainties are given in sigma_o3[time, pressure, latitude]. Version 1 of the BASIC ozone composite is built from SWOOSH v2.6, GOZCARDS v1.0, SBUV-MOD v8.6 and SBUV-MER as described in Tummon et al 2015. *00:00:00.0 on 1/1/1980=2444239.5
DOI: 10.17632/r75799jy6c.1
title: Sequence Variant Data of the Oomycete Pythium insidiosum Strain Pi45

description: A total of 865,332 variants (i.e., SNPs and indels) are identified by mapping 33,692,522 IlluminaHiSeq2500-derived sequence reads of the genome of the Pythium insidiosum strain Pi45 into the reference genome of the Pythium insidiosum strain Pi-S (consists of 53,239,050 bases in 1,192 contigs; accession numbers: BBXB01000001-BBXB01001192).
DOI: 10.5517/ccdc.csd.cc1psj33
title: CCDC 1572695: Experimental Crystal Structure Determination

description: Related Article: Olivier Blacque, Ivan Timokhin, Heinz Berke|2017|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1psjhh
title: CCDC 1572707: Experimental Crystal Structure Determination

description: Related Article: Olivier Blacque, Ivan Timokhin, Heinz Berke|2017|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1psk9b
title: CCDC 1572732: Experimental Crystal Structure Determination

description: Related Article: Olivier Blacque, Chunfang Jiang, Heinz Berke|2017|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1psl46
title: CCDC 1572758: Experimental Crystal Structure Determination

description: Related Article: Olivier Blacque, Chunfang Jiang, Heinz Berke|2017|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1psmz2
title: CCDC 1572815: Experimental Crystal Structure Determination

description: Related Article: Joel Mague, Reza Takjoo|2017|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1psn9f
title: CCDC 1572825: Experimental Crystal Structure Determination

description: Related Article: Frank R. Fronczek|2017|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pspjp
title: CCDC 1572863: Experimental Crystal Structure Determination

description: Related Article: Jiao-Jiao Wei, Wen-Qiong Wang, Wei-Bin Song, Li-Jiang Xuan|2018|Fitoterapia|127|151|doi:10.1016/j.fitote.2018.02.011
description: Related Article: wei jiaojiao|2017|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.886596
title: False Discovery Rate Calculations For Genome-Wide Association Study Of Reproductive Fitness In Drosophila Melanogaster (Sussex Lhm Sample)

description: R code and results of applying false discovery (FDR) rate calculations to establish statistical signficance in a genome-wide association study of reproductive fitness in Drosophila melanogaster. Phenotype values were generated on hemiclone female and male lines from an outbred, laboratory adapted population. Thus, GWAS were previously performed seperately on the phenotype values for each sex, and also using a bivariate GWAS implemented in the R package multiPhen.

FDR calculations were performed using the R package 'fdrtool' on all SNPs, and on LD-independent SNPs, the latter of which was used to determine p-value thresholds for genome-wide significance when all SNPs were considered.
DOI: 10.5281/zenodo.886597
title: False Discovery Rate Calculations For Genome-Wide Association Study Of Reproductive Fitness In Drosophila Melanogaster (Sussex Lhm Sample)

description: R code and results of applying false discovery (FDR) rate calculations to establish statistical signficance in a genome-wide association study of reproductive fitness in Drosophila melanogaster. Phenotype values were generated on hemiclone female and male lines from an outbred, laboratory adapted population. Thus, GWAS were previously performed seperately on the phenotype values for each sex, and also using a bivariate GWAS implemented in the R package multiPhen.

FDR calculations were performed using the R package 'fdrtool' on all SNPs, and on LD-independent SNPs, the latter of which was used to determine p-value thresholds for genome-wide significance when all SNPs were considered.
DOI: 10.5281/zenodo.886048
title: Data From The Paper: D. Malko And A. Kucernak, "Kinetic Isotope Effect In The Oxygen Reduction Reaction (Orr) Over Fe-N/C Catalysts Under Acidic And Alkaline Conditions", Electrochemistry Communications,2017, Https://Doi.Org/10.1016/J.Elecom.2017.09.004

description: Data used to generate the figures in the paper: D. Malko and A. Kucernak, "Kinetic isotope effect in the oxygen reduction reaction (ORR) over Fe-N/C catalysts under acidic and alkaline conditions", Electrochemistry Communications,2017, https://doi.org/10.1016/j.elecom.2017.09.004
DOI: 10.5281/zenodo.886049
title: Data From The Paper: D. Malko And A. Kucernak, "Kinetic Isotope Effect In The Oxygen Reduction Reaction (Orr) Over Fe-N/C Catalysts Under Acidic And Alkaline Conditions", Electrochemistry Communications,2017, Https://Doi.Org/10.1016/J.Elecom.2017.09.004

description: Data used to generate the figures in the paper: D. Malko and A. Kucernak, "Kinetic isotope effect in the oxygen reduction reaction (ORR) over Fe-N/C catalysts under acidic and alkaline conditions", Electrochemistry Communications,2017, https://doi.org/10.1016/j.elecom.2017.09.004
DOI: 10.5281/zenodo.886515
title: Synthetic Tetrode Recording Dataset With Spike-Waveform Drift

description: <strong>Introduction</strong>

This synthetic ground-truth dataset accurately models long-term, continuous extracellular tetrode recordings from the rodent brain over a time-period of 256 hours. Each "recording" comprises spiking of 8 distinct single-units with firing rates ranging from 0.1 - 6 Hz, superimposed on background multi-unit spiking activity at 20 Hz. The recording sampling rate is 30 kHz. Single-unit spike amplitudes drift over a range of 100 to 400 \(\mu V\) based on the drift we observe in our own long-term recordings from the rodent motor cortex and striatum. For more details, please see our paper "Automated long-term recording and analysis of neural activity in behaving animals" ( https://doi.org/10.1101/033266).

These recordings can be used to test the accuracy of spike-sorting algorithms when clustering non-stationary spike waveform data, such as our own Fast Automated Spike Tracker (FAST) outlined in our paper and available at https://github.com/Olveczky-Lab/FAST.

 

<strong>Dataset</strong>

Due to size restrictions, we provide here 1 sample tetrode of the full 6 tetrode dataset. Please contact us (https://olveczkylab.oeb.harvard.edu/about) if you require access to the other 5 synthetic tetrode recordings.

 

<strong>Instructions</strong>

The dataset comprises spike times and spike waveform snippets extracted a continuous synthetic tetrode recording. Provided are...


	A <strong>SpikeTimes</strong> file with a list of sample numbers for detected events (spikes) at <em>uint64</em> precision.
	A <strong>Spikes</strong> file with the waveforms of the detected events in <em>int16</em> precision. Each event waveform comprises <em>4 channels X 64 samples</em> 16-bit words arranged in the order [Ch0-Sample0, Ch1-Sample0, Ch2-Sample0, Ch3-Sample0, Ch0-Sample1, etc.]. To convert to units of voltage, change type to double precision and multiply by 1.95e-7.
	A <strong>SnippeterSettings.xml</strong> file with snippeting parameters (this is auto-generated by the FAST snippeting algorithm).
	A <strong>dataset_params.mat</strong> MATLAB data file containing the simulation parameters. The most important variables in the mat file are <em>sp</em> which contains a list of true spike-times (in samples @ 30 kHz) for all single-units in the dataset, and <em>sp_u</em> which specifies which unit (1-8) each spike originates from. Spike-times are generated by a homogenous Poisson process with firing rate specified for each unit by the variable <em>uFRs</em> and an absolute refractory period of 2 ms. The variable <em>d_Amps</em> specifies the amplitude of each single-unit spikes. The basic spike-waveform shape of each unit is provided in the variable <em>uWVs</em>. The spike-times and identity of background (multi-unit) spikes are specified in <em>b_sp</em> and <em>b_sp_u</em>.
DOI: 10.5281/zenodo.886516
title: Synthetic Tetrode Recording Dataset With Spike-Waveform Drift

description: <strong>Introduction</strong>

This synthetic ground-truth dataset accurately models long-term, continuous extracellular tetrode recordings from the rodent brain over a time-period of 256 hours. Each "recording" comprises spiking of 8 distinct single-units with firing rates ranging from 0.1 - 6 Hz, superimposed on background multi-unit spiking activity at 20 Hz. The recording sampling rate is 30 kHz. Single-unit spike amplitudes drift over a range of 100 to 400 \(\mu V\) based on the drift we observe in our own long-term recordings from the rodent motor cortex and striatum. For more details, please see our paper "Automated long-term recording and analysis of neural activity in behaving animals" ( https://doi.org/10.1101/033266).

These recordings can be used to test the accuracy of spike-sorting algorithms when clustering non-stationary spike waveform data, such as our own Fast Automated Spike Tracker (FAST) outlined in our paper and available at https://github.com/Olveczky-Lab/FAST.

 

<strong>Dataset</strong>

Due to size restrictions, we provide here 1 sample tetrode of the full 6 tetrode dataset. Please contact us (https://olveczkylab.oeb.harvard.edu/about) if you require access to the other 5 synthetic tetrode recordings.

 

<strong>Instructions</strong>

The dataset comprises spike times and spike waveform snippets extracted a continuous synthetic tetrode recording. Provided are...


	A <strong>SpikeTimes</strong> file with a list of sample numbers for detected events (spikes) at <em>uint64</em> precision.
	A <strong>Spikes</strong> file with the waveforms of the detected events in <em>int16</em> precision. Each event waveform comprises <em>4 channels X 64 samples</em> 16-bit words arranged in the order [Ch0-Sample0, Ch1-Sample0, Ch2-Sample0, Ch3-Sample0, Ch0-Sample1, etc.]. To convert to units of voltage, change type to double precision and multiply by 1.95e-7.
	A <strong>SnippeterSettings.xml</strong> file with snippeting parameters (this is auto-generated by the FAST snippeting algorithm).
	A <strong>dataset_params.mat</strong> MATLAB data file containing the simulation parameters. The most important variables in the mat file are <em>sp</em> which contains a list of true spike-times (in samples @ 30 kHz) for all single-units in the dataset, and <em>sp_u</em> which specifies which unit (1-8) each spike originates from. Spike-times are generated by a homogenous Poisson process with firing rate specified for each unit by the variable <em>uFRs</em> and an absolute refractory period of 2 ms. The variable <em>d_Amps</em> specifies the amplitude of each single-unit spikes. The basic spike-waveform shape of each unit is provided in the variable <em>uWVs</em>. The spike-times and identity of background (multi-unit) spikes are specified in <em>b_sp</em> and <em>b_sp_u</em>.
DOI: 10.5517/ccdc.csd.cc1p9628
title: CCDC 1557969: Experimental Crystal Structure Determination

description: Related Article: Jakub Hyvl, Wesley Y. Yoshida, Curtis E. Moore, Arnold L. Rheingold, Matthew F. Cain|2017|Polyhedron|143|99|doi:10.1016/j.poly.2017.08.039
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1p9639
title: CCDC 1557970: Experimental Crystal Structure Determination

description: Related Article: Jakub Hyvl, Wesley Y. Yoshida, Curtis E. Moore, Arnold L. Rheingold, Matthew F. Cain|2017|Polyhedron|143|99|doi:10.1016/j.poly.2017.08.039
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1p964b
title: CCDC 1557971: Experimental Crystal Structure Determination

description: Related Article: Jakub Hyvl, Wesley Y. Yoshida, Curtis E. Moore, Arnold L. Rheingold, Matthew F. Cain|2017|Polyhedron|143|99|doi:10.1016/j.poly.2017.08.039
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1nzr1f
title: CCDC 1548885: Experimental Crystal Structure Determination

description: Related Article: Mukaddus Kariem, Manesh Kumar, Mohd Yawer, Haq Nawaz Sheikh|2017|J.Mol.Struct.|1150|438|doi:10.1016/j.molstruc.2017.08.111
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1nzr2g
title: CCDC 1548886: Experimental Crystal Structure Determination

description: Related Article: Mukaddus Kariem, Manesh Kumar, Mohd Yawer, Haq Nawaz Sheikh|2017|J.Mol.Struct.|1150|438|doi:10.1016/j.molstruc.2017.08.111
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5525/gla.researchdata.458
title: Spectroscopic indications of tunnel barrier charging as the switching mechanism in memristive devices

description: Electron microscopy raw data files relating to the microscopy data presented in the paper.
DOI: 10.5255/ukda-sn-851430
title: Individual and Business Giving
DOI: 10.15468/wjlvh3
title: Schistura systomos ı a new species of loach from southern Laos (Teleostei: Nemacheilidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Maurice Kottelat (2017): Schistura systomos ı a new species of loach from southern Laos (Teleostei: Nemacheilidae). Ichthyol. Explor. Freshwaters 28 (1): 9-16, DOI: 10.5281/zenodo.886698