cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11473389.v1
title: Tourism in a remote nordic region: Vat, internet, oil, english, distance, hofstede and christianity

description: What are the determinants of tourism, when treated as exports in national accounts? Is tourism sensitive to value-added taxation, internet access, oil, English, Christianity and regional trade agreements? Moreover, potential effects of the Hofstede’s cultural dimensions are tested; these are the Hofstede’s cultural dimensions of uncertainty, individualism, power distance, masculinity, and orientation. The relationship between variables in the time-period of 2003-2016 is analysed in this current research. I estimate tourism in logarithms to capture marginal effects of various factors on tourism. This current research obtains and tests international values for these factors empirically. The research seeks to answer if these factors affect the willingness of foreign tourists to visit.
DOI: 10.6084/m9.figshare.11473389.v2
title: Tourism in a Remote Nordic Region: Vat, Internet, Oil, English, Distance, Hofstede, and Christianity

description: What are the determinants of tourism when treated as exports in national accounts? Is tourism sensitive to value-added taxation, Internet access, oil, English, Christianity, and regional trade agreements? Impact of these factors on tourism are tested, as well as the potential effects of Hofstede’s cultural dimensions; these are Hofstede’s cultural dimensions of uncertainty, individualism, power distance, masculinity, and orientation. The relationship between variables in the time period of 2003–2016 is analysed in the current research. The research shows estimate for tourism in logarithms to capture the marginal effects of various factors on tourism. The current research also obtains and tests international values for these factors empirically. The research seeks to answer if these factors affect the willingness of foreign tourists to visit.
DOI: 10.6084/m9.figshare.11473296
title: Dataset for the manuscript entitled "Different aspects of impulsivity in chronic alcohol use disorder with and without comorbid problem gambling"

description: Dataset for the manuscript entitled "Different aspects of impulsivity in chronic alcohol use disorder with and without comorbid problem gambling"
DOI: 10.6084/m9.figshare.11473296.v1
title: Dataset for the manuscript entitled "Different aspects of impulsivity in chronic alcohol use disorder with and without comorbid problem gambling"

description: Dataset for the manuscript entitled "Different aspects of impulsivity in chronic alcohol use disorder with and without comorbid problem gambling"
DOI: 10.6084/m9.figshare.11473101
title: pSHDY#_PpetE:BCD2:mVenus

description: Autonomous shuttle plasmid pSHDY# (w/o <i>mobAY25F</i> point mutation) used for Cu<sup>2+</sup>-induced overexpression of a codon optimized mVenus reporter fluorophore in the cyanobacterium <i>Synechocystis </i>sp. PCC 6803.<br>Basic plasmid backbone precursor of pSHDY (doi: https://doi.org/10.1101/757948) and pSHDY*in.The synthetic expression module contains promoter P<i>petE</i> from <i>Synechocystis </i>sp. PCC 6803 and the bicistronic design BCD2 (doi: 10.1038/nmeth.2404).<br><br>
DOI: 10.6084/m9.figshare.11473101.v1
title: pSHDY#_PpetE:BCD2:mVenus

description: Autonomous shuttle plasmid pSHDY# (w/o <i>mobAY25F</i> point mutation) used for Cu<sup>2+</sup>-induced overexpression of a codon optimized mVenus reporter fluorophore in the cyanobacterium <i>Synechocystis </i>sp. PCC 6803.<br>Basic plasmid backbone precursor of pSHDY (doi: https://doi.org/10.1101/757948) and pSHDY*in.The synthetic expression module contains promoter P<i>petE</i> from <i>Synechocystis </i>sp. PCC 6803 and the bicistronic design BCD2 (doi: 10.1038/nmeth.2404).<br><br>
DOI: 10.6084/m9.figshare.11473095
title: pSHDY#

description: pSHDY# shuttle plasmid backbone, version w/o <i>mobA</i>Y25F point mutation. Precursor backbone of pSHDY as described by Behle et al., 2019 (https://doi.org/10.1101/757948).
DOI: 10.6084/m9.figshare.11473095.v1
title: pSHDY#

description: pSHDY# shuttle plasmid backbone, version w/o <i>mobA</i>Y25F point mutation. Precursor backbone of pSHDY as described by Behle et al., 2019 (https://doi.org/10.1101/757948).
DOI: 10.6084/m9.figshare.11472882
title: MOESM7 of Unique molecular signature in mucolipidosis type IV microglia

description: Additional file 7: Table S3. raw data used to build Fig. 4a with expression as log2 fold change vs. controls.
DOI: 10.6084/m9.figshare.11472882.v1
title: MOESM7 of Unique molecular signature in mucolipidosis type IV microglia

description: Additional file 7: Table S3. raw data used to build Fig. 4a with expression as log2 fold change vs. controls.
DOI: 10.6084/m9.figshare.11472876
title: MOESM4 of The Bdnf and Npas4 genes are targets of HDAC3-mediated transcriptional repression

description: Additional file 4: Table S4. DEGs having HDAC3 peaks in promoter region. Previously published data [77] of differentially-expressed genes during neuronal death was utilized and overlapping analysis with the ChIP-Seq data was performed to get the expression of genes having HDAC3 occupancy at the promoter. S4A shows genes in HK, and S4B shows genes having differential expression in LK.
DOI: 10.6084/m9.figshare.11472873
title: MOESM6 of Unique molecular signature in mucolipidosis type IV microglia

description: Additional file 6: Table S2. List of genes expressed in mucolipidosis type IV mice microglia with expression as log2 fold change vs. WT.
DOI: 10.6084/m9.figshare.11472876.v1
title: MOESM4 of The Bdnf and Npas4 genes are targets of HDAC3-mediated transcriptional repression

description: Additional file 4: Table S4. DEGs having HDAC3 peaks in promoter region. Previously published data [77] of differentially-expressed genes during neuronal death was utilized and overlapping analysis with the ChIP-Seq data was performed to get the expression of genes having HDAC3 occupancy at the promoter. S4A shows genes in HK, and S4B shows genes having differential expression in LK.
DOI: 10.6084/m9.figshare.11472867
title: MOESM3 of The Bdnf and Npas4 genes are targets of HDAC3-mediated transcriptional repression

description: Additional file 3: Table S3. Biological Process-Gene Ontology. List of putative transcriptional targets of HDAC3 in HK (A) and in LK (S3B) were subjected to DAVID and functional annotation was performed. p value and benjamini FDR were calculated and the genes were categorized based on their cellular function.
DOI: 10.6084/m9.figshare.11472873.v1
title: MOESM6 of Unique molecular signature in mucolipidosis type IV microglia

description: Additional file 6: Table S2. List of genes expressed in mucolipidosis type IV mice microglia with expression as log2 fold change vs. WT.
DOI: 10.6084/m9.figshare.11472867.v1
title: MOESM3 of The Bdnf and Npas4 genes are targets of HDAC3-mediated transcriptional repression

description: Additional file 3: Table S3. Biological Process-Gene Ontology. List of putative transcriptional targets of HDAC3 in HK (A) and in LK (S3B) were subjected to DAVID and functional annotation was performed. p value and benjamini FDR were calculated and the genes were categorized based on their cellular function.
DOI: 10.6084/m9.figshare.11472861
title: MOESM5 of Unique molecular signature in mucolipidosis type IV microglia

description: Additional file 5: Table S1. List of genes expressed in Fabry disease mice microglia with expression as log2 fold change vs. WT.
DOI: 10.6084/m9.figshare.11472864
title: MOESM2 of The Bdnf and Npas4 genes are targets of HDAC3-mediated transcriptional repression

description: Additional file 2: Table S2. Unique HDAC3 Peaks in the promoter region in LK. Table shows a list of putative transcriptional targets of HDAC3 in LK. Genes were grouped based on the enrichment of HDAC3 in their promoter region. An area of around 2kb upstream of the TSS was considered as promoter.
DOI: 10.6084/m9.figshare.11472864.v1
title: MOESM2 of The Bdnf and Npas4 genes are targets of HDAC3-mediated transcriptional repression

description: Additional file 2: Table S2. Unique HDAC3 Peaks in the promoter region in LK. Table shows a list of putative transcriptional targets of HDAC3 in LK. Genes were grouped based on the enrichment of HDAC3 in their promoter region. An area of around 2kb upstream of the TSS was considered as promoter.
DOI: 10.6084/m9.figshare.11472858
title: MOESM1 of The Bdnf and Npas4 genes are targets of HDAC3-mediated transcriptional repression

description: Additional file 1: Table S1. Unique HDAC3 Peaks in the promoter region in HK. Table shows a list of putative transcriptional targets of HDAC3 in HK. Genes were grouped based on the enrichment of HDAC3 in their promoter region. An area of around 2kb upstream of the TSS was considered as promoter.
DOI: 10.6084/m9.figshare.11472861.v1
title: MOESM5 of Unique molecular signature in mucolipidosis type IV microglia

description: Additional file 5: Table S1. List of genes expressed in Fabry disease mice microglia with expression as log2 fold change vs. WT.
DOI: 10.6084/m9.figshare.11472858.v1
title: MOESM1 of The Bdnf and Npas4 genes are targets of HDAC3-mediated transcriptional repression

description: Additional file 1: Table S1. Unique HDAC3 Peaks in the promoter region in HK. Table shows a list of putative transcriptional targets of HDAC3 in HK. Genes were grouped based on the enrichment of HDAC3 in their promoter region. An area of around 2kb upstream of the TSS was considered as promoter.
DOI: 10.6084/m9.figshare.11472837
title: MOESM8 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 8: Table S7. Description of the 60 kSGBs retrieved from NHPs and shared with humans that are lacking an official species name (e.g. with species name labelled as “sp.” or “bacterium”), together with the number of reference genomes and MAGs retrieved for each host category.
DOI: 10.6084/m9.figshare.11472837.v1
title: MOESM8 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 8: Table S7. Description of the 60 kSGBs retrieved from NHPs and shared with humans that are lacking an official species name (e.g. with species name labelled as “sp.” or “bacterium”), together with the number of reference genomes and MAGs retrieved for each host category.
DOI: 10.6084/m9.figshare.11472840
title: MOESM9 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 9: Table S8. Description of the SGBs (kSGBs, uSGBs and pSGBs) reported in this study, together with the assigned taxonomy and the number of reference genomes and MAGs retrieved from each host category and NHP dataset.
DOI: 10.6084/m9.figshare.11472840.v1
title: MOESM9 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 9: Table S8. Description of the SGBs (kSGBs, uSGBs and pSGBs) reported in this study, together with the assigned taxonomy and the number of reference genomes and MAGs retrieved from each host category and NHP dataset.
DOI: 10.6084/m9.figshare.11472831
title: MOESM7 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 7: Table S6. SGB presence/absence in the considered metagenomic samples from NHPs.
DOI: 10.6084/m9.figshare.11472831.v1
title: MOESM7 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 7: Table S6. SGB presence/absence in the considered metagenomic samples from NHPs.
DOI: 10.6084/m9.figshare.11472825
title: MOESM5 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 5: Table S4. Description of single-sample assembled genomes (host, wild or captivity status, country of sampling), their assembly and quality statistics, their assigned taxonomy, and SGB, GGB and FGB assignment.
DOI: 10.6084/m9.figshare.11472828
title: MOESM6 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 6: Table S5. KOs associated with NHP and human microbiomes, considering those eight SGBs that are present in at least 10 human and 10 NHP samples. Fisherâ€™s test, FDR-corrected p-values &lt;0.05.
DOI: 10.6084/m9.figshare.11472828.v1
title: MOESM6 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 6: Table S5. KOs associated with NHP and human microbiomes, considering those eight SGBs that are present in at least 10 human and 10 NHP samples. Fisherâ€™s test, FDR-corrected p-values &lt;0.05.
DOI: 10.6084/m9.figshare.11472819
title: MOESM4 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 4: Table S3. Estimated mapped reads according to MetaPhlAn2, both per sample and per dataset.
DOI: 10.6084/m9.figshare.11472825.v1
title: MOESM5 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 5: Table S4. Description of single-sample assembled genomes (host, wild or captivity status, country of sampling), their assembly and quality statistics, their assigned taxonomy, and SGB, GGB and FGB assignment.
DOI: 10.6084/m9.figshare.11472819.v1
title: MOESM4 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 4: Table S3. Estimated mapped reads according to MetaPhlAn2, both per sample and per dataset.
DOI: 10.6084/m9.figshare.11472813
title: MOESM3 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 3: Table S2. MetaPhlAn2 profiles of all metagenomic samples from NHPs considered in this study.
DOI: 10.6084/m9.figshare.11472813.v1
title: MOESM3 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 3: Table S2. MetaPhlAn2 profiles of all metagenomic samples from NHPs considered in this study.
DOI: 10.6084/m9.figshare.11472807
title: MOESM1 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 1: Table S1. NHP gut metagenome datasets considered in this study, together with relevant information like Pubmed ID, host, wild or captivity status, country of sampling, number of samples.
DOI: 10.6084/m9.figshare.11472807.v1
title: MOESM1 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 1: Table S1. NHP gut metagenome datasets considered in this study, together with relevant information like Pubmed ID, host, wild or captivity status, country of sampling, number of samples.
DOI: 10.6084/m9.figshare.11472759
title: MOESM13 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 13: Table S12. Full list of SGBs.
DOI: 10.6084/m9.figshare.11472759.v1
title: MOESM13 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 13: Table S12. Full list of SGBs.
DOI: 10.6084/m9.figshare.11472747
title: MOESM12 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 12: Table S11. List of Treponema SGBs reported in the phylogeny in Fig. 5a and their prevalence in NHPs and humans.
DOI: 10.6084/m9.figshare.11472747.v1
title: MOESM12 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 12: Table S11. List of Treponema SGBs reported in the phylogeny in Fig. 5a and their prevalence in NHPs and humans.
DOI: 10.6084/m9.figshare.11472738
title: MOESM11 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 11: Table S10. Tab1) GGBs description, together with number of MAGs assigned and number of dataset and samples in which the GGB is found, divided by host and NHP dataset. Tab2) Same information for FGBs recovered in this study.
DOI: 10.6084/m9.figshare.11472738.v1
title: MOESM11 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 11: Table S10. Tab1) GGBs description, together with number of MAGs assigned and number of dataset and samples in which the GGB is found, divided by host and NHP dataset. Tab2) Same information for FGBs recovered in this study.
DOI: 10.6084/m9.figshare.11472735
title: MOESM10 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 10: Table S9. SGBs found in &gt;3 NHP samples and their association with either Westernized or non-Westernized microbiomes (Fisherâ€™s test Bonferroni-corrected p-values, comprehensive list of SGBs shown in Fig. 3a).
DOI: 10.6084/m9.figshare.11472735.v1
title: MOESM10 of Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

description: Additional file 10: Table S9. SGBs found in &gt;3 NHP samples and their association with either Westernized or non-Westernized microbiomes (Fisherâ€™s test Bonferroni-corrected p-values, comprehensive list of SGBs shown in Fig. 3a).
DOI: 10.6084/m9.figshare.11472711
title: MOESM3 of Heat flow density estimates in the Upper Rhine Graben using laboratory measurements of thermal conductivity on sedimentary rocks

description: Additional file 3: Supplementary materials. Thermal properties database for samples of the Upper Rhine Graben in the dry state at ambient temperature (black), water-saturated state at ambient temperature (blue), dry state at high temperature (red). Samples are in stratigraphical order. Data include lithology, measured porosity, measuring temperature, thermal conductivity and associated standard deviation, thermal diffusivity and associated standard deviation, calculated volumetric heat capacity and associated standard deviation, effect of water saturation and slope of the trendline of thermal conductivity as a function of temperature (Fig. 8).
DOI: 10.6084/m9.figshare.11472711.v1
title: MOESM3 of Heat flow density estimates in the Upper Rhine Graben using laboratory measurements of thermal conductivity on sedimentary rocks

description: Additional file 3: Supplementary materials. Thermal properties database for samples of the Upper Rhine Graben in the dry state at ambient temperature (black), water-saturated state at ambient temperature (blue), dry state at high temperature (red). Samples are in stratigraphical order. Data include lithology, measured porosity, measuring temperature, thermal conductivity and associated standard deviation, thermal diffusivity and associated standard deviation, calculated volumetric heat capacity and associated standard deviation, effect of water saturation and slope of the trendline of thermal conductivity as a function of temperature (Fig. 8).
DOI: 10.6084/m9.figshare.11472702
title: MOESM1 of Heat flow density estimates in the Upper Rhine Graben using laboratory measurements of thermal conductivity on sedimentary rocks

description: Additional file 1: Appendix A. Equations of the trendlines of thermal conductivity as a function of temperature shown in Fig. 8. Coefficient of determination R2 are also given. The samples are ordered by lithology.
DOI: 10.6084/m9.figshare.11472702.v1
title: MOESM1 of Heat flow density estimates in the Upper Rhine Graben using laboratory measurements of thermal conductivity on sedimentary rocks

description: Additional file 1: Appendix A. Equations of the trendlines of thermal conductivity as a function of temperature shown in Fig. 8. Coefficient of determination R2 are also given. The samples are ordered by lithology.
DOI: 10.6084/m9.figshare.11472651
title: Identification of a transcriptional regulator for oligotrophy-responsive promoter in <i>Rhodococcus erythropolis</i> N9T-4

description: Two genes, <i>aldA</i>, and <i>mnoA</i>, encoding an NAD-dependent aliphatic dehydrogenase and <i>N,N′-</i>dimethyl-4-nitrosoaniline-dependent methanol dehydrogenase, respectively, are strongly expressed when <i>Rhodococcus erythropolis</i> N9T-4 is grown under oligotrophic conditions. In this study, we found a transcriptional regulator required for the transcription of both <i>aldA</i> and <i>mnoA</i>. The transcriptional regulator was also found to be essential for the oligotrophic growth of N9T-4.
DOI: 10.6084/m9.figshare.11472621
title: Genomic dosage values of BB potato population

description: Table of dihaploid genomic dosage values. Cross was potato var. Desiree x IvP-48
DOI: 10.6084/m9.figshare.11472651.v1
title: Identification of a transcriptional regulator for oligotrophy-responsive promoter in <i>Rhodococcus erythropolis</i> N9T-4

description: Two genes, <i>aldA</i>, and <i>mnoA</i>, encoding an NAD-dependent aliphatic dehydrogenase and <i>N,N′-</i>dimethyl-4-nitrosoaniline-dependent methanol dehydrogenase, respectively, are strongly expressed when <i>Rhodococcus erythropolis</i> N9T-4 is grown under oligotrophic conditions. In this study, we found a transcriptional regulator required for the transcription of both <i>aldA</i> and <i>mnoA</i>. The transcriptional regulator was also found to be essential for the oligotrophic growth of N9T-4.
DOI: 10.6084/m9.figshare.11472621.v1
title: BB_potato_population

description: Table of dihaploid genomic dosage values. Cross was potato var. Desiree x IvP-48
DOI: 10.6084/m9.figshare.11472651.v3
title: Identification of a transcriptional regulator for oligotrophy-responsive promoter in <i>Rhodococcus erythropolis</i> N9T-4

description: Two genes, <i>aldA</i>, and <i>mnoA</i>, encoding an NAD-dependent aliphatic dehydrogenase and <i>N,N′-</i>dimethyl-4-nitrosoaniline-dependent methanol dehydrogenase, respectively, are strongly expressed when <i>Rhodococcus erythropolis</i> N9T-4 is grown under oligotrophic conditions. In this study, we found a transcriptional regulator required for the transcription of both <i>aldA</i> and <i>mnoA</i>. The transcriptional regulator was also found to be essential for the oligotrophic growth of N9T-4.
DOI: 10.6084/m9.figshare.11472651.v2
title: Identification of a transcriptional regulator for oligotrophy-responsive promoter in <i>Rhodococcus erythropolis</i> N9T-4

description: Two genes, <i>aldA</i>, and <i>mnoA</i>, encoding an NAD-dependent aliphatic dehydrogenase and <i>N,N′-</i>dimethyl-4-nitrosoaniline-dependent methanol dehydrogenase, respectively, are strongly expressed when <i>Rhodococcus erythropolis</i> N9T-4 is grown under oligotrophic conditions. In this study, we found a transcriptional regulator required for the transcription of both <i>aldA</i> and <i>mnoA</i>. The transcriptional regulator was also found to be essential for the oligotrophic growth of N9T-4.