cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4588981
title: Comparison of radiative transfer schemes for the calculation of aerosol radiative forcing in Mars' atmosphere

description: Output datasets for Figures (fig. 1 to 9) for the intercomparison of radiative transfer algorithms for the calculation of aerosol radiative forcing in the Martian atmosphere.
DOI: 10.5281/zenodo.4588737
title: Dataset for Stimulus-specific plasticity in human visual gamma-band activity and functional connectivity

description: Per-trial dataset accompanying the publication Stauch, Peter, Schuler, and Fries (2020): Stimulus-specific plasticity in human visual gamma-band activity and functional connectivity
description: {"references": ["Stauch, Peter, Schuler, and Fries (2020): Stimulus-specific plasticity in human visual gamma-band activity and functional connectivity"]}
DOI: 10.5281/zenodo.4540355
title: Electrophysiology practicals for undergraduates: links to code, data, and lesson plans

description: This document is extended data for the article “Building capacity through open approaches: Lessons from developing undergraduate electrophysiology practicals", currently available in preprint form via F1000Research (https://doi.org/10.12688/f1000research.51049.1). It provides a full list of the electrophysiology practicals we developed for undergraduate students, including where to access all our open code, data, and lesson plans.
DOI: 10.5281/zenodo.4540354
title: Electrophysiology practicals for undergraduates: links to code, data, and lesson plans

description: This document is extended data for the article “Building capacity through open approaches: Lessons from developing undergraduate electrophysiology practicals", currently available in preprint form via F1000Research (https://doi.org/10.12688/f1000research.51049.1). It provides a full list of the electrophysiology practicals we developed for undergraduate students, including where to access all our open code, data, and lesson plans.
DOI: 10.6084/m9.figshare.8057303
title: Data for: In utero behavioral imprinting to predation risk in pups of the bank vole

description: Data set for: Sievert, Kerkhoven, Haapakoski, Matson, Ylönen, O. & Ylönen, H., <i>In utero behavioral imprinting to predation risk in pups of the bank vole</i>
DOI: 10.6084/m9.figshare.8057303.v1
title: Data for: In utero behavioral imprinting to predation risk in pups of the bank vole

description: Data set for: Sievert, Kerkhoven, Haapakoski, Matson, Ylönen, O. & Ylönen, H., <i>In utero behavioral imprinting to predation risk in pups of the bank vole</i>
DOI: 10.6084/m9.figshare.14179766.v1
title: Data set TL_PE_PS

description: TL_PE_PS
DOI: 10.6084/m9.figshare.14179766
title: Data set TL_PE_PS

description: TL_PE_PS
DOI: 10.34740/kaggle/dsv/2005472
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.5517/ccdc.csd.cc1ztft1
title: CCDC 1841704: Experimental Crystal Structure Determination

description: Related Article: Hyunchul Kwon, Eunsung Lee|2018|Dalton Trans.|47|17206|doi:10.1039/C8DT03884H
DOI: 10.5517/ccdc.csd.cc26ws52
title: CCDC 2052484: Experimental Crystal Structure Determination

description: Related Article: Rui-Jun Ma, Wen-Ke Xu, Jian-Ting Sun, Ling Chen, Chang-Mei Si, Bang-Guo Wei|2021|Tetrahedron Lett.|67|152873|doi:10.1016/j.tetlet.2021.152873
DOI: 10.5517/ccdc.csd.cc26ws63
title: CCDC 2052485: Experimental Crystal Structure Determination

description: Related Article: Rui-Jun Ma, Wen-Ke Xu, Jian-Ting Sun, Ling Chen, Chang-Mei Si, Bang-Guo Wei|2021|Tetrahedron Lett.|67|152873|doi:10.1016/j.tetlet.2021.152873
DOI: 10.5281/zenodo.4456140
title: Upper Penticton Creek Watershed Experiment -- Data Repository

description: Data sets collected as part of the Upper Penticton Creek Watershed Experiment. This version is a beta version for review and checking. Some of these data sets may be revised or updated. A stable version will be published by May, 1, 2021. Please see <strong>upc_data_description.html</strong> for descriptions of the data sets included in the repository.
DOI: 10.5281/zenodo.4587941
title: Outputs of AMIP experiments using ECHAM-6.3.05p2 with the concurrent radiation scheme

description: To improve the scalability and performance of the atmospheric model ECHAM6, we extend the concurrency within the model by running the radiation component in parallel with other atmospheric processes (adiabatic and diabetic processes). We performed experiments to evaluate the computational performance and stability of the model with both concurrent and classical radiation schemes. The experiments are based on ECHAM-6.3.05p2 and follows the Atmospheric Model Intercomparison Project (AMIP) protocol. There are two types of data sets in this repository: performance_measurements.tar and AMIP_Data_For_Heidari_et_al.tar (A) performance_measurements.tar The data set "performance_measurements.tar.gz" provides the performance measurement results collected from multiple AMIP experiments at coarse resolution and include: 1. The total runtime of the model with the classical radiation scheme. 2. The total runtime of the model with the concurrent radiation scheme 3. The runtime of the classical radiation scheme 4. The runtime of the concurrent radiation scheme 5. The cost of data exchange between the radiation component and the main model when the model uses the concurrent radiation scheme 6. The idle time of the MPI processes when the model uses the concurrent radiation scheme (B)AMIP_Data_For_Heidari_et_al.tar This data set provides the output from the AMIP runs at CR and LR configuration using the concurrent and classical radiation scheme. Using reanalysis and observational reference data, we compare and assess the simulated mean climate state and climate variability by the concurrent radiation scheme and its counterpart in the original model. We find that the concurrent radiation scheme retains the major features of the simulated mean climate and internal variability as in the original model, despite some minor differences.
DOI: 10.5281/zenodo.4587940
title: Outputs of AMIP experiments using ECHAM-6.3.05p2 with the concurrent radiation scheme

description: To improve the scalability and performance of the atmospheric model ECHAM6, we extend the concurrency within the model by running the radiation component in parallel with other atmospheric processes (adiabatic and diabetic processes). We performed experiments to evaluate the computational performance and stability of the model with both concurrent and classical radiation schemes. The experiments are based on ECHAM-6.3.05p2 and follows the Atmospheric Model Intercomparison Project (AMIP) protocol. There are two types of data sets in this repository: performance_measurements.tar and AMIP_Data_For_Heidari_et_al.tar (A) performance_measurements.tar The data set "performance_measurements.tar.gz" provides the performance measurement results collected from multiple AMIP experiments at coarse resolution and include: 1. The total runtime of the model with the classical radiation scheme. 2. The total runtime of the model with the concurrent radiation scheme 3. The runtime of the classical radiation scheme 4. The runtime of the concurrent radiation scheme 5. The cost of data exchange between the radiation component and the main model when the model uses the concurrent radiation scheme 6. The idle time of the MPI processes when the model uses the concurrent radiation scheme (B)AMIP_Data_For_Heidari_et_al.tar This data set provides the output from the AMIP runs at CR and LR configuration using the concurrent and classical radiation scheme. Using reanalysis and observational reference data, we compare and assess the simulated mean climate state and climate variability by the concurrent radiation scheme and its counterpart in the original model. We find that the concurrent radiation scheme retains the major features of the simulated mean climate and internal variability as in the original model, despite some minor differences.
DOI: 10.25345/c5v51c
title: MassIVE MSV000087014 - Listeria exploits IFITM3 to suppress antibacterial activity in phagocytes
title: We examined the phagosome and lysosome proteome to determine the effects of type I IFN and IFITM3 on phagosome proteolysis. Phagosomes were isolated from IFNbeta-treated macrophages using magnetic latex beads, and lysosomes were isolated using iron dextran.
DOI: 10.5281/zenodo.4589007
title: Data and models for Blue Brain Search

description: This archive contains the data and models for Blue Brain Search. They are in the format of a DVC remote. Indeed, Blue Brain Search uses DVC to track machine learning models and datasets and to make them shareable and reproducible. Each archive corresponds to a specific version of Blue Brain Search. Please note that the archive for v0.1.0 is 4.3 GB once extracted. The instructions to create an archive for a new version of Blue Brain Search is as follow: <pre><code class="language-bash">git clone --depth 1 --branch &lt;version&gt; https://github.com/BlueBrain/Search.git cd Search dvc pull cd .dvc mv cache bbs_dvc_remote tar -czf bbs_dvc_remote.tar.gz bbs_dvc_remote</code></pre> For v0.1.0, this takes around ~3 mins 15 to create the archive.
DOI: 10.5281/zenodo.4589006
title: Data and models for Blue Brain Search

description: This archive contains the data and models for Blue Brain Search. They are in the format of a DVC remote. Indeed, Blue Brain Search uses DVC to track machine learning models and datasets and to make them shareable and reproducible. Each archive corresponds to a specific version of Blue Brain Search. Please note that the archive for v0.1.0 is 4.3 GB once extracted. The instructions to create an archive for a new version of Blue Brain Search is as follow: <pre><code class="language-bash">git clone --depth 1 --branch &lt;version&gt; https://github.com/BlueBrain/Search.git cd Search dvc pull cd .dvc mv cache bbs_dvc_remote tar -czf bbs_dvc_remote.tar.gz bbs_dvc_remote</code></pre> For v0.1.0, this takes around ~3 mins 15 to create the archive.
DOI: 10.5281/zenodo.4588599
title: Logs of: Model-based versus Model-free Deep Reinforcement Learning for Autonomous Racing Cars

description: Logs of: Model-based versus Model-free Deep Reinforcement Learning for Autonomous Racing Cars We report the log data resulting from the performed experiments.<br>
DOI: 10.5281/zenodo.4588598
title: Logs of: Model-based versus Model-free Deep Reinforcement Learning for Autonomous Racing Cars

description: Logs of: Model-based versus Model-free Deep Reinforcement Learning for Autonomous Racing Cars We report the log data resulting from the performed experiments.<br>
DOI: 10.17632/2jchjvtf7j.1
title: Data for: Magmatic cannibalisation of a Permo-Triassic Ni-Cu-PGE-(Au-Te) system during the breakup of Pangea - implications for craton margin metal and volatile transfer in the lower crust

description: This is the complete database of the geochemical data published in this article
DOI: 10.17632/x4tnrh5rj2.1
title: Data for: Breaking the Spell with Credit-Easing: Self-Confirming Credit Crises in Competitive Search Economies

description: Dataset briefly described in Section 4.2 of "Breaking the Spell with Credit-Easing: Self-Conrming Credit Crises in Competitive Search Economies" by Gaetano Gaballo and Ramon Marimon (August, 2020) Excel file from the dataset – complied by Viktor Marinkov (EUI PhD, Oxford University)– contains information on - Cumulative net losses with respect to the original pool balance - Interest rates and total amounts in US dollars These information are collected for each tranche for several issuers in the automotive sector. The final dataset encompasses information on issuers for which both interest rates, amounts and cumulative losses are available. This is why the sample is slightly reduced with respect to the separate figures for Interest Rates and Cumulative Losses. The list includes: BMW Vehicle Lease Trust CarMax Auto Owner Trust Ford credit Auto Owner Trust Harley-Davidson Motorcycle Trust Honda Auto Receivables Owner Trust Hyundai Auto Receivables Trust Nissan Lease Trust Nissan Auto Receivables Owner Trust World Omni Auto Receivables Trust The data are collected from prospectuses publicly available online. The major source utilized is https://www.bamsec.com/companies/6189/208 where the majority of observations are available.
DOI: 10.6084/m9.figshare.12974621
title: Raw_data_files

description: Data sets used in manuscript "Host resistance to Bt is linked to altered bacterial community within a specialist insect herbivore"
DOI: 10.6084/m9.figshare.12974621.v1
title: Raw_data_files

description: Data sets used in manuscript "Host resistance to Bt is linked to altered bacterial community within a specialist insect herbivore"
DOI: 10.5519/qd.2ge835vi
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (132 records)
DOI: 10.17632/bst7b98ttf.1
title: Data for: Petrogenesis and tectonic implications of the late Paleoproterozoic A-type rhyolites at the southwestern North China Craton

description: Table 1. SIMS U-Pb dating results of zircons from the Baijiagou, Shizuizi, and Baojiashan rhyolites. Table 2. Major and trace element data of Baijiagou, Shizuizi, and Baojiashan rhyolites. Table 3. Whole-rock Sm-Nd isotopic composition of the Baijiagou, Shizuizi, and Baojiashan rhyolites. Table 4. Lu-Hf isotope compositions and O isotope data of zircons from the Baijiagou, Shizuizi and Baojiashan rhyolites.
DOI: 10.26208/2fka-0798
title: Identification of Somatic Structural Variants in Solid Tumors by Optical Genome Mapping

description: Genomic structural variants comprise a significant fraction of somatic mutations driving cancer onset and progression. However, such variants are not readily revealed by standard next-generation sequencing. Optical genome mapping (OGM) surpasses short-read sequencing in detecting large (>500 bp) and complex structural variants (SVs) but requires isolation of ultra-high-molecular-weight DNA from the tissue of interest. We have successfully applied a protocol involving a paramagnetic nanobind disc to a wide range of solid tumors. Using as little as 6.5 mg of input tumor tissue, we show successful extraction of high-molecular-weight genomic DNA that provides a high genomic map rate and effective coverage by optical mapping. We demonstrate the system’s utility in identifying somatic SVs affecting functional and cancer-related genes for each sample. Duplicate/triplicate analysis of select samples shows intra-sample reliability but also intra-sample heterogeneity. We also demonstrate that simply filtering SVs based on a GRCh38 human control database provides high positive and negative predictive values for true somatic variants. Our results indicate that the solid tissue DNA extraction protocol, OGM and SV analysis can be applied to a wide variety of solid tumors to capture SVs across the entire genome with functional importance in cancer prognosis and treatment.
DOI: 10.6084/m9.figshare.13333877.v3
title: Updates to Chiara et al 2021.

description: This repository contains updates to the Chiara et al 2021 MBE paper entitled: "Comparative genomics reveals early emergence and biased spatio-temporal distribution of SARS-CoV-2 " . <br>These include: <br>1) Novel MacroHaplogroups (MHGs) and Haplogroups (HGs) based on newly released SARS-CoV-2 genomic sequences<br>2) Assignment of newly released genomes to MHGs and HGs as defined above.<br>At every novel update a brief report will be released which will highlight the most relevant novelties<br>
DOI: 10.5066/p9prw8jx
title: Modeled and measured greenhouse gas emissions from Lake Powell and bathymetric analysis of tributary littoral habitat at different water levels

description: This data release contains model inputs used to estimate surface water greenhouse gas fluxes from two large arid reservoirs, Lake Powell and Lake Mead. The release also contains empirical, spatially explicit water quality and greenhouse gas data from a single field survey conducted in Lake Powell in July of 2017. Finally, this release contains surface area estimates of shallow (&lt; 15m) tributary regions of Lake Powell under different water level scenarios.
DOI: 10.6084/m9.figshare.13333877.v4
title: Updates to Chiara et al 2021.

description: <b>Current update</b>Latest update (March 2021) is available at: https://figshare.com/s/42ff4caaf66c624ee514Please follow the link for more details<br>This repository contains updates to the Chiara et al 2021 MBE paper entitled: "Comparative genomics reveals early emergence and biased spatio-temporal distribution of SARS-CoV-2 " . <br>These include: <br>1) Novel MacroHaplogroups (MHGs) and Haplogroups (HGs) based on newly released SARS-CoV-2 genomic sequences<br>2) Assignment of newly released genomes to MHGs and HGs as defined above.<br>At every novel update a brief report will be released which will highlight the most relevant novelties<br><br><b>Previous updates</b>March 2021: https://figshare.com/s/42ff4caaf66c624ee514<br><br><br><br><br><br>
DOI: 10.26208/82yg-eq53
title: Human Papilloma Virus Integration Strictly Correlates with Global Genome Instability in Head and Neck Cancer

description: We applied a combination of whole genome sequencing and whole genome imaging to interrogate the genome structure of HPV-positive oropharyngeal squamous cell carcinomas. We found the virus integrated in the host genome in two thirds of the tumors examined but resided solely extrachromosomally in the other third. Integration of the virus occurred at essentially random sites within the genome and at more than one site in the genome in half the cases of integration. In several cases, integration occurred at the junction between inter- or intra-chromosomal translocations. Focal amplification of the virus and the genomics sequences surrounding it often occurred subsequent to integration, with the number of tandem repeats in the chromosome fully accounting for the increased copy number of the genome sequences flanking the site of integration. In all cases, viral integration correlated with pervasive genome-wide somatic alterations, including multiple insertions, deletions, translocations, inversions and point mutations. Few or no somatic structural variants were present in tumors with only episomal HPV. Our data can best be interpreted by positing that episomal HPV is captured in the host genome following an episode of global genome instability during tumor development. Viral integration and the associated extensive mutation of the genome correlated with more aggressive tumors, suggesting that HPV integration status may inform prognosis.
DOI: 10.5281/zenodo.4589124
title: Replication Package for ICSE'21 paper - Representation of Developer Expertise in Open Source Software

description: Replication package for ICSE'21 paper: Representation of Developer Expertise in Open Source Software. See README for details.
DOI: 10.6084/m9.figshare.13190735.v2
title: Genotype data

description: These data include 1. the genotypes for all mice at ~110,000 typed variants; genotypes are represented as a probability vector quantifying the founder of origin of each variant2. the kinship between all pairs of mice, both using all chromosomes, and leaving each chromosome out (for QTL mapping)
DOI: 10.5281/zenodo.4589132
title: Deep conservation of ribosome stall sites across RNA processing genes

description: Intermediate data files for the manuscript "Deep conservation of ribosome stall sites across RNA processing genes". The code is available at: https://github.com/katchyz/stalling.
DOI: 10.5281/zenodo.4589131
title: Deep conservation of ribosome stall sites across RNA processing genes

description: Intermediate data files for the manuscript "Deep conservation of ribosome stall sites across RNA processing genes". The code is available at: https://github.com/katchyz/stalling.
DOI: 10.35090/g288-8k21
title: Comparative study of snake lateral undulation kinematics in model heterogeneous terrain
DOI: 10.5281/zenodo.4589145
title: PAN21 Authorship Analysis: Style Change Detection

description: This is the dataset for the Style Change Detection task of PAN 2021.
DOI: 10.17632/y5ydh4cpbs.1
title: Online Supplementary - CSN1S1 and CSN3 gene polymorphisms in female Murrah buffaloes

description: This research communication describes the occurrence of polymorphisms in the CSN1S1 and CSN3 genes in female Murrah buffaloes. The four casein genes, CSN1S1, CSN1S2, CSN2, and CSN3 are responsible for encoding the four fractions of the casein protein. The CSN1S1 and CSN3 genes were analyzed in 41 lactating Murrah buffaloes using nucleotide sequencing. An SNP was found in the amplified fragment of the CSN1S1 gene, located in nucleotide number 2,123 of the promoter region in position nt-258 (A/G). As for the CSN3 gene, two SNPs at nt-98 and nt-102 of exon number 4 were identified in codons 33 (ACC/ATC) and 34 (ACC/ACT) of the analyzed fragment. By investigating the polymorphisms of candidate genes in dairy buffalo important as-sociations between genetic variants and the desired characteristics of milk and its derivatives can be established, enabling genetic selection to be assisted by molecular markers.
DOI: 10.17632/2t8yg8vhk4.1
title: Data from: Consistency in supplemental food availability affects the space use of wintering birds

description: We've broken up the larger data set into separate files that correspond to each species and/or to a specific model in the analysis. For each of the three species (black-capped chickadee, white-breasted nuthatch, and tufted titmouse) there are four models. There is a also fourth data set for the preliminary model ran to determine what weather variables to include in the main analyses. The full dataset, not broken up, is also included.
DOI: 10.17632/d6xrhpmzdp.1
title: Data for: High resolution seasonal and decadal inventory of anthropic gas-phase and particle emissions for Argentina

description: This Dataset support the gas-phase and particulate atmospheric emission inventory for Argentina in high spatial resolution (approx. 2.5 km × 2.5 km). Monthly pollutant emission maps for CO2, CH4, N2O, CO, NOx, NMVOC, NH3, SO2, PM10, PM2.5, TSP and BC between 1995 and 2020 are provided. The emission inventory includes the following sectors: energy production, fugitive emissions from oil and gas production, industrial fuel consumption and production, transport (road, maritime and air), agriculture, livestock production, residential, commercial and biomass burning. The whole dataset has been developed with the porpoise of contributing to various areas of research and governmental assessments, including air quality modeling and decision making, among others.
DOI: 10.17632/934fb2kypp.1
title: Knowledge, attitudes and practice through online surveys, during phase 2 of the COVID-19 pandemic in Mexico: RAW DATA

description: Raw Data
DOI: 10.17632/m68k63nnk3.3
title: Southern England sediment elemental concentration data

description: The database provides a summary of &gt;45,000 contaminant concentration data points for twenty-nine marine sediment chemicals from 334 Southern England (UK) sites (sites within the English/French Channel and the southern North and Celtic Seas), covering a survey period of 31 years (1983-2013). The database provides spatially and temporally extensive records of arsenic (As), cadmium (Cd), chromium (Cr), copper (Cu), iron (Fe), mercury (Hg), nickel (Ni), lead (Pb) and zinc (Zn) concentrations in sediments from coastal and open sea sites. Additional records of manganese (Mn), aluminium (Al), lithium (Li), tin (Sn) [and tributyltin (TBT)], barium (Ba), antimony (Sb), boron (B), calcium (Ca), molybdenum (Mo), cobalt (Co), selenium (Se), potassium (K), magnesium (Mg), beryllium (Be), vanadium (V), titanium (Ti), sodium (Na), silver (Ag), thallium (Tl) and strontium (Sr) represent approximately 13 % of the full database. The database can be used to assess the contaminant load for specific sites, but also to strengthen and target current and future legislative control measures for anthropogenic contaminant inputs. Information contained in the database is relevant to marine ecotoxicologists, coastal ecologists (practitioners, scientists and policy makers) and government decision makers.