cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24540647
title: Additional file 16 of METTL1 promotes tumorigenesis through tRNA-derived fragment biogenesis in prostate cancer

description: Additional file 16: Supplementary Table S7. Differentially expressed mRNAs in WT vs METTL1 KO PC3 cells.
DOI: 10.6084/m9.figshare.24540647.v1
title: Additional file 16 of METTL1 promotes tumorigenesis through tRNA-derived fragment biogenesis in prostate cancer

description: Additional file 16: Supplementary Table S7. Differentially expressed mRNAs in WT vs METTL1 KO PC3 cells.
DOI: 10.6084/m9.figshare.8287718
title: Expression analysis of <i>PIN</i>-formed auxin efflux transporter genes in maize

description: The local auxin gradient has a decisive role in auxin signaling, auxin-mediated development and abiotic stress response. PINFORMED (PIN)-formed auxin efflux transporters are very important for determining the direction of auxin transport and maintaining a local auxin concentration gradient. In this study, all candidate <i>PIN</i> genes from the current maize genome sequence database were identified and categorized based on amino acid similarity. The expression pattern of these <i>PIN</i>s was analyzed in maize inbred line DH4866, which was selected from the progeny of 7922 and 478, and served as the female parent line of many hybrids in Shandong Denghai Seeds Co Ltd (China). Tissue-specific expression patterns indicated that they may have different roles in different stages of development, especially in the root system. Promoter motif analysis of four maize <i>PIN1</i> genes and their expression levels in response to NAA, low phosphate levels and PEG treatment indicated that <i>ZmPIN1a</i> and <i>ZmPIN1b</i> may contribute more than <i>ZmPIN1c</i> and <i>ZmPIN1d</i> to root growth regulation and abiotic stress response. Analysis of the <i>ZmPIN1a</i> and <i>ZmPIN1b</i> transgenic lines (in DH4866) indicated that they have different effects on root development and growth, with <i>ZmPIN1a</i> increasing the number of lateral roots and inhibiting their elongation to form a developed root system, while <i>ZmPIN1b</i> increases root biomass by promoting the growth of both lateral and seminal roots. These results indicated that maize <i>PIN1</i> genes function in coordination during maize development and in response to abiotic stress.
DOI: 10.6084/m9.figshare.8287718.v1
title: Expression analysis of <i>PIN</i>-formed auxin efflux transporter genes in maize

description: The local auxin gradient has a decisive role in auxin signaling, auxin-mediated development and abiotic stress response. PINFORMED (PIN)-formed auxin efflux transporters are very important for determining the direction of auxin transport and maintaining a local auxin concentration gradient. In this study, all candidate <i>PIN</i> genes from the current maize genome sequence database were identified and categorized based on amino acid similarity. The expression pattern of these <i>PIN</i>s was analyzed in maize inbred line DH4866, which was selected from the progeny of 7922 and 478, and served as the female parent line of many hybrids in Shandong Denghai Seeds Co Ltd (China). Tissue-specific expression patterns indicated that they may have different roles in different stages of development, especially in the root system. Promoter motif analysis of four maize <i>PIN1</i> genes and their expression levels in response to NAA, low phosphate levels and PEG treatment indicated that <i>ZmPIN1a</i> and <i>ZmPIN1b</i> may contribute more than <i>ZmPIN1c</i> and <i>ZmPIN1d</i> to root growth regulation and abiotic stress response. Analysis of the <i>ZmPIN1a</i> and <i>ZmPIN1b</i> transgenic lines (in DH4866) indicated that they have different effects on root development and growth, with <i>ZmPIN1a</i> increasing the number of lateral roots and inhibiting their elongation to form a developed root system, while <i>ZmPIN1b</i> increases root biomass by promoting the growth of both lateral and seminal roots. These results indicated that maize <i>PIN1</i> genes function in coordination during maize development and in response to abiotic stress.
DOI: 10.6084/m9.figshare.24540650
title: Additional file 17 of METTL1 promotes tumorigenesis through tRNA-derived fragment biogenesis in prostate cancer

description: Additional file 17: Supplementary Table S8. Correlation of differentially expressed mRNAs and newly synthesized proteins in WT and METTL1 KO PC3 cells.
DOI: 10.6084/m9.figshare.24540650.v1
title: Additional file 17 of METTL1 promotes tumorigenesis through tRNA-derived fragment biogenesis in prostate cancer

description: Additional file 17: Supplementary Table S8. Correlation of differentially expressed mRNAs and newly synthesized proteins in WT and METTL1 KO PC3 cells.
DOI: 10.6084/m9.figshare.19297805
title: Additional file 1 of An advanced network pharmacology study to explore the novel molecular mechanism of Compound Kushen Injection for treating hepatocellular carcinoma by bioinformatics and experimental verification

description: Additional file 1: Table S1. Detailed information of Compound Kushen injection.
DOI: 10.6084/m9.figshare.19297805.v1
title: Additional file 1 of An advanced network pharmacology study to explore the novel molecular mechanism of Compound Kushen Injection for treating hepatocellular carcinoma by bioinformatics and experimental verification

description: Additional file 1: Table S1. Detailed information of Compound Kushen injection.
DOI: 10.6084/m9.figshare.19297808
title: Additional file 2 of An advanced network pharmacology study to explore the novel molecular mechanism of Compound Kushen Injection for treating hepatocellular carcinoma by bioinformatics and experimental verification

description: Additional file 2: Table S2. Detailed information of 358 disease targets.
DOI: 10.6084/m9.figshare.19297808.v1
title: Additional file 2 of An advanced network pharmacology study to explore the novel molecular mechanism of Compound Kushen Injection for treating hepatocellular carcinoma by bioinformatics and experimental verification

description: Additional file 2: Table S2. Detailed information of 358 disease targets.
DOI: 10.6084/m9.figshare.24540695
title: Additional file 1 of Genome-wide identification and expression analysis of xyloglucan endotransglucosylase/hydrolase genes family in Salicaceae during grafting

description: Additional file 1: Supplementary Table 1. The characteristics of PtrXTHs and SpuXTHs. Supplementary Table 2. The Ka/Ks ratios of poplar and willow gene pair. Supplementary Table 3. The secondary structure prediction of PtrXTHs and SpuXTHs. Supplementary Table 4. The protein sequences of poplar and willow. Supplementary Table 5. Specific primers for XTH genes in poplar and willow. Supplementary Table 6. The predicted transcription factors that regulate five XTH genes.
DOI: 10.6084/m9.figshare.24540695.v1
title: Additional file 1 of Genome-wide identification and expression analysis of xyloglucan endotransglucosylase/hydrolase genes family in Salicaceae during grafting

description: Additional file 1: Supplementary Table 1. The characteristics of PtrXTHs and SpuXTHs. Supplementary Table 2. The Ka/Ks ratios of poplar and willow gene pair. Supplementary Table 3. The secondary structure prediction of PtrXTHs and SpuXTHs. Supplementary Table 4. The protein sequences of poplar and willow. Supplementary Table 5. Specific primers for XTH genes in poplar and willow. Supplementary Table 6. The predicted transcription factors that regulate five XTH genes.
DOI: 10.34740/kaggle/dsv/7688209
title: Public Opinion Russia Ukraine War (Updated Daily)
DOI: 10.6084/m9.figshare.15103585
title: Data, code and other supplementary material;proof of language editing services from Investigation of sag behaviour for aluminium conductor steel reinforced considering tensile stress distribution

description: Data (including the experimental and simulation data) and code are involved as the electronic supplementary material. ;proof of language editing services for the manuscripts
DOI: 10.6084/m9.figshare.15103585.v1
title: Data, code and other supplementary material;proof of language editing services from Investigation of sag behaviour for aluminium conductor steel reinforced considering tensile stress distribution

description: Data (including the experimental and simulation data) and code are involved as the electronic supplementary material. ;proof of language editing services for the manuscripts
DOI: 10.6084/m9.figshare.19297898
title: Additional file 2 of RNA profiling of blood platelets noninvasively differentiates colorectal cancer from healthy donors and noncancerous intestinal diseases: a retrospective cohort study

description: Additional file 2. Raw reads count data matrix of all samples.
DOI: 10.6084/m9.figshare.19297898.v1
title: Additional file 2 of RNA profiling of blood platelets noninvasively differentiates colorectal cancer from healthy donors and noncancerous intestinal diseases: a retrospective cohort study

description: Additional file 2. Raw reads count data matrix of all samples.
DOI: 10.6084/m9.figshare.24016506
title: source_data for doping effects on phonon transport in quasi-one-dimensional crystal TiS3 nanoribbons

description: This is the source data for paper "<b>Unexpected</b><b> </b><b>doping effects on phonon transport in quasi-one-dimensional </b><b>van der Waals</b><b> </b><b>crystal TiS</b><sub><strong>3</strong></sub><b> nanoribbons"</b>
DOI: 10.6084/m9.figshare.14055070
title: Prediction of high-performance computing input/output variability and its application to optimization for system configurations

description: Performance variability is an important measure for a reliable high performance computing (HPC) system. Performance variability is affected by complicated interactions between numerous factors, such as CPU frequency, the number of input/output (IO) threads, and the IO scheduler. In this paper, we focus on HPC IO variability. The prediction of HPC variability is a challenging problem in the engineering of HPC systems and there is little statistical work on this problem to date. Although there are many methods available in the computer experiment literature, the applicability of existing methods to HPC performance variability needs investigation, especially, when the objective is to predict performance variability both in interpolation and extrapolation settings. A data analytic framework is developed to model data collected from large-scale experiments. Various promising methods are used to build predictive models for the variability of HPC systems. We evaluate the performance of the methods by measuring prediction accuracy at previously unseen system configurations. We also discuss a methodology for optimizing system configurations that uses the estimated variability map. The findings from method comparisons and developed tool sets in this paper yield new insights into existing statistical methods and can be beneficial for the practice of HPC variability management. This paper has supplementary materials online.
DOI: 10.6084/m9.figshare.14055070.v1
title: Prediction of high-performance computing input/output variability and its application to optimization for system configurations

description: Performance variability is an important measure for a reliable high performance computing (HPC) system. Performance variability is affected by complicated interactions between numerous factors, such as CPU frequency, the number of input/output (IO) threads, and the IO scheduler. In this paper, we focus on HPC IO variability. The prediction of HPC variability is a challenging problem in the engineering of HPC systems and there is little statistical work on this problem to date. Although there are many methods available in the computer experiment literature, the applicability of existing methods to HPC performance variability needs investigation, especially, when the objective is to predict performance variability both in interpolation and extrapolation settings. A data analytic framework is developed to model data collected from large-scale experiments. Various promising methods are used to build predictive models for the variability of HPC systems. We evaluate the performance of the methods by measuring prediction accuracy at previously unseen system configurations. We also discuss a methodology for optimizing system configurations that uses the estimated variability map. The findings from method comparisons and developed tool sets in this paper yield new insights into existing statistical methods and can be beneficial for the practice of HPC variability management. This paper has supplementary materials online.
DOI: 10.6084/m9.figshare.25234859
title: Air change rate and SARS-CoV-2 exposure in hospitals and residences: A meta-analysis

description: As COVID-19 swept across the globe, increased ventilation and implementation of air cleaning were emphasized by the US CDC and WHO as important strategies to reduce the risk of inhalation exposure to the virus. To assess whether higher ventilation and air cleaning rates lead to lower exposure risk to SARS-CoV-2, 1274 manuscripts published between April 2020 and September 2022 were screened using key words “airborne SARS-CoV-2 or “SARS-CoV-2 aerosol.” Ninety-three studies involved air sampling at locations with known sources (hospitals and residences) were selected and associated data were compiled. Two metrics were used to assess exposure risk: SARS-CoV-2 concentration and SARS-CoV-2 detection rate in air samples. Locations were categorized by type (hospital or residence) and proximity to the location housing the isolated/quarantined patient (primary or secondary). The results showed that hospital wards had lower airborne virus concentrations than residential isolation rooms. A negative correlation was found between airborne virus concentrations in primary-occupancy areas and air changes per hour (ACH). In hospital settings, sample positivity rates were significantly reduced in secondary-occupancy areas compared to primary-occupancy areas, but they were similar across sampling locations in residential settings. ACH and sample positivity rates were negatively correlated, though the effect was diminished when ACH values exceeded 8. While limitations associated with diverse sampling protocols exist, data considered by this meta-analysis support the notion that higher ACH may reduce exposure risks to the virus in ambient air. Copyright © 2024 American Association for Aerosol Research
DOI: 10.6084/m9.figshare.25234859.v1
title: Air change rate and SARS-CoV-2 exposure in hospitals and residences: A meta-analysis

description: As COVID-19 swept across the globe, increased ventilation and implementation of air cleaning were emphasized by the US CDC and WHO as important strategies to reduce the risk of inhalation exposure to the virus. To assess whether higher ventilation and air cleaning rates lead to lower exposure risk to SARS-CoV-2, 1274 manuscripts published between April 2020 and September 2022 were screened using key words “airborne SARS-CoV-2 or “SARS-CoV-2 aerosol.” Ninety-three studies involved air sampling at locations with known sources (hospitals and residences) were selected and associated data were compiled. Two metrics were used to assess exposure risk: SARS-CoV-2 concentration and SARS-CoV-2 detection rate in air samples. Locations were categorized by type (hospital or residence) and proximity to the location housing the isolated/quarantined patient (primary or secondary). The results showed that hospital wards had lower airborne virus concentrations than residential isolation rooms. A negative correlation was found between airborne virus concentrations in primary-occupancy areas and air changes per hour (ACH). In hospital settings, sample positivity rates were significantly reduced in secondary-occupancy areas compared to primary-occupancy areas, but they were similar across sampling locations in residential settings. ACH and sample positivity rates were negatively correlated, though the effect was diminished when ACH values exceeded 8. While limitations associated with diverse sampling protocols exist, data considered by this meta-analysis support the notion that higher ACH may reduce exposure risks to the virus in ambient air. Copyright © 2024 American Association for Aerosol Research
DOI: 10.6084/m9.figshare.7239407
title: Probing Laves phase formation in Ni-alloy during ultrasonic arc-welding with atomistic modelling

description: Ultrasonic arc-welding displays significant advantages, which are usually explained by macroscopic methods. This paper proposes a new approach to understand the mechanisms behind beneficial phenomena for nickel-based alloys. Two atomistic models were developed to depict niobium segregation and Laves phase reduction in ultrasound. It is found that an increased centrifugal force exerts on niobium atoms, and increases the equivalent force that pulls niobium atoms away from segregated region. Each niobium atom exhibits weaker ability to form Ni<sub>2</sub>Nb in ultrasound, prohibiting niobium atoms from forming Laves phase. As validated by experimental work, Laves phase was decreased by &gt;90vol.-%. The proposed models provide an effective tool to predict structure and property of weld metals in ultrasound at atomistic-scale.
DOI: 10.6084/m9.figshare.7239407.v1
title: Probing Laves phase formation in Ni-alloy during ultrasonic arc-welding with atomistic modelling

description: Ultrasonic arc-welding displays significant advantages, which are usually explained by macroscopic methods. This paper proposes a new approach to understand the mechanisms behind beneficial phenomena for nickel-based alloys. Two atomistic models were developed to depict niobium segregation and Laves phase reduction in ultrasound. It is found that an increased centrifugal force exerts on niobium atoms, and increases the equivalent force that pulls niobium atoms away from segregated region. Each niobium atom exhibits weaker ability to form Ni<sub>2</sub>Nb in ultrasound, prohibiting niobium atoms from forming Laves phase. As validated by experimental work, Laves phase was decreased by &gt;90vol.-%. The proposed models provide an effective tool to predict structure and property of weld metals in ultrasound at atomistic-scale.
DOI: 10.25402/epi.16676596
title: epi-2021-0159 Suppl. table 1

description: <b>Supplementary Table
 1. </b>Public datasets that used in this study.
DOI: 10.25402/epi.16676596.v1
title: epi-2021-0159 Suppl. table 1

description: <b>Supplementary Table
 1. </b>Public datasets that used in this study.
DOI: 10.6084/m9.figshare.19298042
title: Additional file 12 of Discovery and characterization of differentially expressed soybean miRNAs and their targets during soybean mosaic virus infection unveils novel insight into Soybean-SMV interaction

description: Additional file 12: Table S4. List of primers used for all the experiments.
DOI: 10.6084/m9.figshare.19298042.v1
title: Additional file 12 of Discovery and characterization of differentially expressed soybean miRNAs and their targets during soybean mosaic virus infection unveils novel insight into Soybean-SMV interaction

description: Additional file 12: Table S4. List of primers used for all the experiments.
DOI: 10.6084/m9.figshare.19298051
title: Additional file 2 of Discovery and characterization of differentially expressed soybean miRNAs and their targets during soybean mosaic virus infection unveils novel insight into Soybean-SMV interaction

description: Additional file 2: Table S1. Summary of read details from resistant and susceptible lines.
DOI: 10.6084/m9.figshare.19298051.v1
title: Additional file 2 of Discovery and characterization of differentially expressed soybean miRNAs and their targets during soybean mosaic virus infection unveils novel insight into Soybean-SMV interaction

description: Additional file 2: Table S1. Summary of read details from resistant and susceptible lines.
DOI: 10.6084/m9.figshare.19298063
title: Additional file 4 of Discovery and characterization of differentially expressed soybean miRNAs and their targets during soybean mosaic virus infection unveils novel insight into Soybean-SMV interaction

description: Additional file 4: Table S2. Classification of miRNAs family details.
DOI: 10.6084/m9.figshare.19298063.v1
title: Additional file 4 of Discovery and characterization of differentially expressed soybean miRNAs and their targets during soybean mosaic virus infection unveils novel insight into Soybean-SMV interaction

description: Additional file 4: Table S2. Classification of miRNAs family details.
DOI: 10.6084/m9.figshare.19298072
title: Additional file 6 of Discovery and characterization of differentially expressed soybean miRNAs and their targets during soybean mosaic virus infection unveils novel insight into Soybean-SMV interaction

description: Additional file 6: Table S3. Summary of annotated differentially expressed miRNA target genes.
DOI: 10.6084/m9.figshare.19298072.v1
title: Additional file 6 of Discovery and characterization of differentially expressed soybean miRNAs and their targets during soybean mosaic virus infection unveils novel insight into Soybean-SMV interaction

description: Additional file 6: Table S3. Summary of annotated differentially expressed miRNA target genes.
DOI: 10.6084/m9.figshare.19298186
title: Additional file 2 of Laser ablation inductively coupled plasma mass spectrometry analysis of potash and m-Na-Al glasses in China- using Kernel methods for trace element analysis

description: Additional file 2. Data analysed in this study and published data used for comparison.
DOI: 10.15468/dl.ig5h8c
title: Occurrence Download

description: A dataset containing 3358 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "Geometry POLYGON((142.75 -37.25,142.75 -37.75,143.25 -37.75,143.25 -37.25,142.75 -37.25))"
 ]
}

 The dataset includes 3358 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004518-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rg5tkp
title: Occurrence Download

description: A dataset containing 674 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Spain",
 "Country is Portugal"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Caloplaca cerina (Hedw.) Th.Fr."
 ]
}

 The dataset includes 674 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008449-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c6w9wu
title: Occurrence Download

description: A dataset containing 245 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chorizanthe pulchella Brandegee"
 ]
}

 The dataset includes 245 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137151-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uaqivu
title: Occurrence Download

description: A dataset containing 6756 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myocastor coypus (Molina, 1782)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6756 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004518-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.khuaob
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Guatteria pakaraimae Scharf & Maas"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007869-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.