cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10971187
title: A computational workflow for cell line profiling by Imaging Mass Cytometry.

description: Imaging Mass Cytometry Data as 32-bit single TIFF with computational analysis from the manuscript:  A computational workflow for cell line profiling by Imaging Mass Cytometry.

Breast cancer cell lines SKBR3 MCF7 HCC1143 IMC data and CellProfiler pipelines.zip

Elongated cell lines HeLa SKOV3 BJ IMC data and CellProfiler pipelines.zip:

Small cell lines A431 HT29 BxPC3 IMC data and CellProfiler pipelines.zip

U937 PMA-differentiated cells IMC data and CellProfiler pipeline.zip

A431 Cisplatin Study IMC data and CellProfiler pipeline.zip

Contains 1 folder per cell line or drug treatment of single TIFF 32-bit markers exported from MCD/txt files (including Xe131 channel) and their respective cpproj. pipeline file for IMC Cell Line Profiler workstream reproducible analysis

IMC Cell Line Profiler high dimensional and correlation analysis R scripts.zip

Contains three adaptable R scripts for high dimensional analysis, correlation analysis and combination of both scripts for Machine Learning classified datasets.

Breast cancer cell lines nuclear state classification by CellProfiler Analyst MLs.zip

Contains SQLite databases, properties files, training datasets, nuclear classes visual rendering, and classifier model files with outputs for two machine learning classifiers (Random Forest and Fast Gentle Boosting) per breast cancer cell line for CellProfiler Analyst workflow reproducibility.

A431 Cisplatin Study IMC data nuclear state classification by CellProfiler Analyst MLs.zip

Contains SQLite databases, properties files, training datasets, classifier model with outputs for Fast Gentle Boosting and Random Forest per treatment for CellProfiler Analyst workflow reproducibility.

IMC Cell Line Profiler pseudo-color images with Ki-67 marker Cytoplasm marker and Cell-ID nuclei (Fig2 Fig3), visual nuclei and whole-cell segmentation contours rendered images (Fig4).

Non-compensated and compensated multiTIFF 32-bit cells lines with Cellprofiler masks SCE objects and FCS files and Datatables.zip

Contains publicly available compensation matrix (https://zenodo.org/records/7575859) , R compensation script (Compensation IMC data with CATALYST.R), compensated and non-compensated multiTIFF stacks 32-bit per cell line experiment, exported CellProfiler 16-bit masks per cell line dataset, R single cell experiment script (Conversion IMC data to Single Cell Experiments Objects and FCS.R) with inputs and outputs (fcs files, sce files, panel files, metadata files),R conversion single cell experiment to datatable script (Conversion SCE to Datatable and analysis.R).

Step-by-step guide to assist users with the IMC Cell Line Profiler computational workflow.
DOI: 10.5281/zenodo.17196478
title: A computational workflow for cell line profiling by Imaging Mass Cytometry.

description: Imaging Mass Cytometry Data as 32-bit single TIFF with computational analysis from the manuscript:  A computational workflow for cell line profiling by Imaging Mass Cytometry.

Breast cancer cell lines SKBR3 MCF7 HCC1143 IMC data and CellProfiler pipelines.zip

Elongated cell lines HeLa SKOV3 BJ IMC data and CellProfiler pipelines.zip:

Small cell lines A431 HT29 BxPC3 IMC data and CellProfiler pipelines.zip

U937 PMA-differentiated cells IMC data and CellProfiler pipeline.zip

A431 Cisplatin Study IMC data and CellProfiler pipeline.zip

Contains 1 folder per cell line or drug treatment of single TIFF 32-bit markers exported from MCD/txt files (including Xe131 channel) and their respective cpproj. pipeline file for IMC Cell Line Profiler workstream reproducible analysis

IMC Cell Line Profiler high dimensional and correlation analysis R scripts.zip

Contains three adaptable R scripts for high dimensional analysis, correlation analysis and combination of both scripts for Machine Learning classified datasets.

Breast cancer cell lines nuclear state classification by CellProfiler Analyst MLs.zip

Contains SQLite databases, properties files, training datasets, nuclear classes visual rendering, and classifier model files with outputs for two machine learning classifiers (Random Forest and Fast Gentle Boosting) per breast cancer cell line for CellProfiler Analyst workflow reproducibility.

A431 Cisplatin Study IMC data nuclear state classification by CellProfiler Analyst MLs.zip

Contains SQLite databases, properties files, training datasets, classifier model with outputs for Fast Gentle Boosting and Random Forest per treatment for CellProfiler Analyst workflow reproducibility.

IMC Cell Line Profiler pseudo-color images with Ki-67 marker Cytoplasm marker and Cell-ID nuclei (Fig2 Fig3), visual nuclei and whole-cell segmentation contours rendered images (Fig4).

Non-compensated and compensated multiTIFF 32-bit cells lines with Cellprofiler masks SCE objects and FCS files and Datatables.zip

Contains publicly available compensation matrix (https://zenodo.org/records/7575859) , R compensation script (Compensation IMC data with CATALYST.R), compensated and non-compensated multiTIFF stacks 32-bit per cell line experiment, exported CellProfiler 16-bit masks per cell line dataset, R single cell experiment script (Conversion IMC data to Single Cell Experiments Objects and FCS.R) with inputs and outputs (fcs files, sce files, panel files, metadata files),R conversion single cell experiment to datatable script (Conversion SCE to Datatable and analysis.R).

Step-by-step guide to assist users with the IMC Cell Line Profiler computational workflow.
DOI: 10.15151/esrf-es-2247219540
title: Slags as resources of advanced functional materials, compoundformation, modification and characteristics - FITTSCHEN

description: Pyrometallurical slags are reused where possible i.e. mostly in construction industry. Not all slags can be reused, due to high load of hazardous elements and unfavorable characteristics a large portion also is stocked in waste piles. The aim of this research is to identify materials to be synthesized in the slags which have favorable properties for reuse. We have identified Li-ion battery recycling slags in a study on slag analogues having very interesting luminescence properties. These materials have a simple composition of Ca, Si, Mn and Li. Besides understanding the composition and properties of the materials, a deeper understanding of the genesis of these materials which usually evolve under non-equilibrium conditions is targeted. With this respect we have studied molecular dynamics simulations and non-equilibrium thermodynamics of slag analogue melts as well as experimental approaches including studies on fast cooled and slow cooled specimens to characterize the material.
DOI: 10.15468/dl.k5pwpt
title: Occurrence Download

description: A dataset containing 36900 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "HasCoordinate is true",
 "TaxonKey is Eurotiomycetes"
 ]
}

 The dataset includes 36900 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010822-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mp34y5
title: Occurrence Download

description: A dataset containing 434 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glossina morsitans"
 ]
}

 The dataset includes 434 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010823-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5tvxvh
title: Occurrence Download

description: A dataset listing the 92 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Amphibia [GBIF Backbone Taxonomy], Squamata [GBIF Backbone Taxonomy], Crocodylia [GBIF Backbone Taxonomy])",
 "GadmGid is one of (COL.19.1_2)",
 {
 "and" : [
 "Elevation is less than or equal to 500m"
 ]
 }
 ]
 }
 ]
}

 The dataset's 92 records were derived from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010814-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.19964.40328
title: downtown area NbS
DOI: 10.15468/dl.2rs5k5
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "TaxonKey is Acanthoscurria natalensis"
 ]
}

 The dataset includes 186 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010824-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17502107
title: A controlled System for Parahydrogen Hyperpolarization experiments

description: These data corresponds to the paper: 

A controlled System for Parahydrogen Hyperpolarization experiments

Journal: Molecules

Year: 2025

Lorenzo Franco 1, Federico Floreani 1, Salvatore Mamone 2, Ahmed Mohammed Faramawy 1, Marco Ruzzi 1, Cristina Tubaro 1 and Gabriele Stevanato 1,*

1    Dipartimento di Scienze Chimiche, Università di Padova, Via Marzolo 1, 35131, Padova, Italy; 

2    Dept. MESVA (Life, Health & Environmental Sciences), Università dell’Aquila, Via Vetoio SNC, Localita' Coppito, 67100, L'Aquila, Italy



   Correspondence: gabriele.stevanato@unipd.it


ABSTRACT:

Parahydrogen-induced hyperpolarization (PHIP), introduced nearly four decades ago, provides an elegant solution to one of the fundamental limitations of nuclear magnetic resonance (NMR) — its notoriously low sensitivity. By converting the spin order of parahydrogen into nuclear spin polarization, NMR signals can be boosted by several orders of magnitude. Here we present a portable, compact and cost-effective setup that brings PHIP and Signal Amplification By Reversible Exchange (SABRE) experiments within easy reach, operating seamlessly across ultra-low-field (0–10 μT) and high-field (>1 T) conditions at 50% parahydrogen enrichment. The system provides precise control over bubbling pressure, temperature, and gas flow, enabling systematic studies of how these parameters shape hyperpolarization performance. Using the benchmark Chloro(1,5-cyclooctadiene)[1,3-bis(2,4,6-trimethylphenyl)imidazole-2-ylidene]iridium(I) (Ir-Imes) catalyst, we explore the catalyst activation time and response to parahydrogen flow and pressure. Polarization transfer experiments from hydrides to [1-13C]pyruvate leading to the estimation of heteronuclear J-couplings are also presented. We further demonstrate the use of Chloro(1,5-cyclooctadiene)[1,3-bis(2,6-diisopropylphenyl)imidazolidin-2-ylidene]iridium(I) (Ir-SIPr), a recently introduced catalyst that can also be used for pyruvate hyperpolarization. The proposed design is robust, reproducible, and easy to implement in any laboratory, widening the route to explore and expand the capabilities of parahydrogen-based hyperpolarization.

FUNDING

This research has been funded/co-funded by the European Union (ERC StG, HYPMET, 101117082). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them.

ACKNOWLEDGEMENTS

GS acknowledges the internal mechanical and electrical workshop, specifically Lorenzo Dainese, Roberto Inilli and Claudio Comaron for their assistance in building the parahydrogen generator and the distribution system. GS also acknowledges Prof. Fabrizio Mancin and Prof. Federico Rastrelli from Università degli Studi di Padova (IT) for the use of the XPulse benchtop NMR spectrometer. Part of the data have been adapted from our recent publication (DOI: https://doi.org/10.1039/D5CP01773D) with permission from the RSC.
DOI: 10.5281/zenodo.17502106
title: A controlled System for Parahydrogen Hyperpolarization experiments

description: These data corresponds to the paper: 

A controlled System for Parahydrogen Hyperpolarization experiments

Journal: Molecules

Year: 2025

Lorenzo Franco 1, Federico Floreani 1, Salvatore Mamone 2, Ahmed Mohammed Faramawy 1, Marco Ruzzi 1, Cristina Tubaro 1 and Gabriele Stevanato 1,*

1    Dipartimento di Scienze Chimiche, Università di Padova, Via Marzolo 1, 35131, Padova, Italy; 

2    Dept. MESVA (Life, Health & Environmental Sciences), Università dell’Aquila, Via Vetoio SNC, Localita' Coppito, 67100, L'Aquila, Italy



   Correspondence: gabriele.stevanato@unipd.it


ABSTRACT:

Parahydrogen-induced hyperpolarization (PHIP), introduced nearly four decades ago, provides an elegant solution to one of the fundamental limitations of nuclear magnetic resonance (NMR) — its notoriously low sensitivity. By converting the spin order of parahydrogen into nuclear spin polarization, NMR signals can be boosted by several orders of magnitude. Here we present a portable, compact and cost-effective setup that brings PHIP and Signal Amplification By Reversible Exchange (SABRE) experiments within easy reach, operating seamlessly across ultra-low-field (0–10 μT) and high-field (>1 T) conditions at 50% parahydrogen enrichment. The system provides precise control over bubbling pressure, temperature, and gas flow, enabling systematic studies of how these parameters shape hyperpolarization performance. Using the benchmark Chloro(1,5-cyclooctadiene)[1,3-bis(2,4,6-trimethylphenyl)imidazole-2-ylidene]iridium(I) (Ir-Imes) catalyst, we explore the catalyst activation time and response to parahydrogen flow and pressure. Polarization transfer experiments from hydrides to [1-13C]pyruvate leading to the estimation of heteronuclear J-couplings are also presented. We further demonstrate the use of Chloro(1,5-cyclooctadiene)[1,3-bis(2,6-diisopropylphenyl)imidazolidin-2-ylidene]iridium(I) (Ir-SIPr), a recently introduced catalyst that can also be used for pyruvate hyperpolarization. The proposed design is robust, reproducible, and easy to implement in any laboratory, widening the route to explore and expand the capabilities of parahydrogen-based hyperpolarization.

FUNDING

This research has been funded/co-funded by the European Union (ERC StG, HYPMET, 101117082). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them.

ACKNOWLEDGEMENTS

GS acknowledges the internal mechanical and electrical workshop, specifically Lorenzo Dainese, Roberto Inilli and Claudio Comaron for their assistance in building the parahydrogen generator and the distribution system. GS also acknowledges Prof. Fabrizio Mancin and Prof. Federico Rastrelli from Università degli Studi di Padova (IT) for the use of the XPulse benchtop NMR spectrometer. Part of the data have been adapted from our recent publication (DOI: https://doi.org/10.1039/D5CP01773D) with permission from the RSC.
DOI: 10.15468/dl.rb5z7v
title: Occurrence Download

description: A dataset containing 24889 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "HasCoordinate is true",
 "TaxonKey is Glomeromycetes"
 ]
}

 The dataset includes 24889 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010825-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rr3kn5
title: Occurrence Download

description: A dataset containing 27341 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Spain",
 "OccurrenceStatus is Present",
 "PublishingOrg is ada19a05-4216-44c7-aa4f-6e7177bcb0ac",
 "TaxonKey is one of (Motacilla flava, Alauda arvensis, Alectoris rufa, Anthus campestris, Anthus pratensis, Athene noctua, Bubulcus ibis, Carduelis carduelis, Ciconia ciconia, Cisticola juncidis, Coturnix coturnix, Emberiza calandra, Emberiza cirlus, Emberiza citrinella, Emberiza hortulana, Falco tinnunculus, Galerida cristata, Galerida theklae, Hirundo rustica, Lanius collurio, Lanius senator, Linaria cannabina, Melanocorypha calandra, Merops apiaster, Oenanthe hispanica, Passer domesticus, Passer montanus, Petronia petronia, Pica pica, Saxicola rubetra, Saxicola rubicola, Serinus serinus, Streptopelia turtur, Sturnus unicolor, Sturnus vulgaris, Sylvia communis, Upupa epops, Vanellus vanellus)",
 "Year is 2020"
 ]
}

 The dataset includes 27341 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010826-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3z3f9r
title: Occurrence Download

description: A dataset containing 186970 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Occurrence evidence, Human Observation, Material sample, Observation)",
 "Continent is South America",
 "Country is Colombia",
 "GadmGid is one of (COL.14_2, COL.4_2, COL.29_2, COL.20_2, COL.6_2, COL.19_2, COL.12_2)",
 "OccurrenceStatus is Present",
 "TaxonKey is Insecta",
 "Year 1000-2020"
 ]
}

 The dataset includes 186970 records from 161 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013538-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yjfthh
title: Occurrence Download

description: A dataset containing 976794219 species occurrences available in GBIF matching the query:
{ }

 The dataset includes 976794219 records from 19280 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002445-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dwthjw
title: Occurrence Download

description: A dataset containing 262 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epinephelus retouti Bleeker, 1868"
 ]
}

 The dataset includes 262 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035330-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112054947
title: Baal Myth Sixth Tablet

description: [Text Description:] Shapsh helps Anat recover Baal's corpse, Anat destroys Mot, Baal is restored and fights Mot ❧ [Text or Publication Number Note:] KTU 1.6; CTA 6; CAT 1.6; KTU2 1.6; CTU 1.6; RS 2.[009]; RS 5.155 ❧ [Excavation Description:] Excavations at Ras Shamra 1930. Found in Library of the High Priest, p. t. 210-264, Acropolis, excavated by Claude F.-A. Schaeffer, Mission Archeologique Francaise. ❧ [Medium:] Clay ❧ [Script Note:] Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet, 26.5 cm. X 19.5 cm., 2 fragments ❧ [Physical Object Note:] Grey clay, six columns, incomplete
DOI: 10.15468/dl.fkvgxc
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tricyrtis ohsumiensis Masam."
 ]
}

 The dataset includes 85 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020208-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gvz5wk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tricyrtis viridula Hiroshi Takahashi, 1998"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020219-230810091245214/datasets/export for details.
DOI: 10.15468/dl.h9w8bn
title: Occurrence Download

description: A dataset containing 198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Humiriastrum diguense (Cuatrec.) Cuatrec.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 198 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034300-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112055001
title: Baal Myth Sixth Tablet

description: [Text Description:] Shapsh helps Anat recover Baal's corpse, Anat destroys Mot, Baal is restored and fights Mot ❧ [Text or Publication Number Note:] KTU 1.6; CTA 6; CAT 1.6; KTU2 1.6; CTU 1.6; RS 2.[009]; RS 5.155 ❧ [Excavation Description:] Excavations at Ras Shamra 1930. Found in Library of the High Priest, p. t. 210-264, Acropolis, excavated by Claude F.-A. Schaeffer, Mission Archeologique Francaise. ❧ [Medium:] Clay ❧ [Script Note:] Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet, 26.5 cm. X 19.5 cm., 2 fragments ❧ [Physical Object Note:] Grey clay, six columns, incomplete
DOI: 10.15468/dl.hfqavr
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Populus ciliata Wall. ex Royle"
 ]
}

 The dataset includes 59 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234742-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mybtr6
title: Occurrence Download

description: A dataset containing 1857 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex digitata L.",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 1857 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0407646-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112050609
title: P.Oxy.VII 1030 Notification of Death, P.Oxy.VII 1030

description: [Text Description:] Notice of the death of a slave. ❧ [Text or Publication Number Note:] P.Oxy.VII 1030, P.Oxy. 1030, Spurlock 1914.21.0017 ❧ [Excavation Description:] Excavated by archaeologists, including Bernard Pyne Grenfell and Arthur Surridge Hunt, at an ancient rubbish dump near Oxyrhynchus in Egypt (28°32'N 30°40'E, modern el-Bahnasa). ❧ [Medium:] Papyrus ❧ [Script Note:] Greek ❧ [Physical Object Description:] Papyrus manuscript, 26.2 x 9.6 cm.
DOI: 10.15468/dl.yt9fnh
title: Occurrence Download

description: A dataset containing 237 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lindera strychnifolia (Siebold & Zucc.) Fern.-Vill."
 ]
}

 The dataset includes 237 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034310-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.