cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bnvrpb
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Pseudorasbora parva (Temminck & Schlegel, 1846)"
 ]
}

 The dataset includes 57 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008885-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v63ran
title: Occurrence Download

description: A dataset containing 836 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Phyllobates terribilis Myers, Daly & Malkin, 1978"
 ]
}

 The dataset includes 836 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015148-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3uk39d
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ilex cauliflora H.W.Li ex Y.R.Li"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028273-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x73coy
title: Occurrence Download

description: A dataset containing 768 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "Geometry POLYGON((-101.590576 27.965294,-101.590576 26.824070,-101.008300 26.824070,-101.008300 27.965294,-101.590576 27.965294))"
 ]
}

 The dataset includes 768 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008886-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azyey9
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anasterias suteri (deLoriol, 1894)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 32 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040678-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hpbnq2
title: Occurrence Download

description: A dataset containing 800 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diospyros montana Roxb."
 ]
}

 The dataset includes 800 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024154-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kgm8bj
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Peperomia lindeniana Miq.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 36 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008886-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kkp6f7
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anasterias varia (Philippi, 1870)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 20 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040685-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rhejah
title: Occurrence Download

description: A dataset containing 3540 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Capito niger (P.L.S.Müller, 1776)"
 ]
}

 The dataset includes 3540 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023941-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qrmd96
title: Occurrence Download

description: A dataset containing 4450 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myotis grisescens A.H.Howell, 1909"
 ]
}

 The dataset includes 4450 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008886-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r43ya8
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Cornufer vitianus (Duméril, 1853)"
 ]
}

 The dataset includes 60 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040682-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4p5vff
title: Occurrence Download

description: A dataset containing 3057 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Phoeniculus bollei (Hartlaub, 1858)"
 ]
}

 The dataset includes 3057 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024008-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.isui2o
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Micrurus laticollaris Peters, 1870"
 ]
}

 The dataset includes 61 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008886-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.quw48x
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Derris marginata (Roxb.) Benth."
 ]
}

 The dataset includes 119 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021784-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vdp2xs
title: Occurrence Download

description: A dataset containing 2047 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Nonnula ruficapilla (Tschudi, 1844)"
 ]
}

 The dataset includes 2047 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023976-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c8ews1
title: Occurrence Download

description: A dataset containing 385139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phocidae",
 "HasCoordinate is true"
 ]
}

 The dataset includes 385139 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008886-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2y9d4k
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is North Marine Region whaler shark collection records (DEW collation), Australia (1999- 2005)"
 ]
}

 The dataset includes 124 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021792-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wt95yr
title: Occurrence Download

description: A dataset containing 192 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diospyros melanoxylon Roxb."
 ]
}

 The dataset includes 192 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023977-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nz595a
title: Occurrence Download

description: A dataset containing 431 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Litoria daviesae Mahony, Knowles, Foster & Donnellan, 2001"
 ]
}

 The dataset includes 431 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039232-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qr7ujh
title: Occurrence Download

description: A dataset containing 2443 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pterois volitans (Linnaeus, 1758)"
 ]
}

 The dataset includes 2443 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008886-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fmtrfs
title: Occurrence Download

description: A dataset containing 340 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dioscorea dregeana (Kunth) T.Durand & Schinz"
 ]
}

 The dataset includes 340 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021790-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jpzta5
title: Occurrence Download

description: A dataset containing 172 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dracaena pethera Byng & Christenh."
 ]
}

 The dataset includes 172 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024048-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.scfmcb
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Azadirachta indica var. minor Valeton"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008886-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j6986e
title: Occurrence Download

description: A dataset containing 2096 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dethawia splendens (Lapeyr.) Kerguélen"
 ]
}

 The dataset includes 2096 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024166-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y9mqxs
title: Occurrence Download

description: A dataset containing 985 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leucosticte tephrocotis tephrocotis"
 ]
}

 The dataset includes 985 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015149-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2eqamc
title: Occurrence Download

description: A dataset containing 404 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Iran (Islamic Republic of)",
 "TaxonKey is Sitta neumayer Michahelles, 1830"
 ]
}

 The dataset includes 404 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008886-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fsxwe7
title: Occurrence Download

description: A dataset containing 250 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diospyros obliquifolia (Hiern ex Gürke) F.White"
 ]
}

 The dataset includes 250 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024511-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9nsve
title: Occurrence Download

description: A dataset containing 65880 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((48 61.39572, 54 61.39572, 54 62.70324, 48 62.70324, 48 61.39572))"
 ]
}

 The dataset includes 65880 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040691-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lxh7b5
title: Occurrence Download

description: A dataset containing 12594071 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Country is Canada",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12594071 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008887-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14274112
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.18040197
title: Phylogeny-guided correction reveals that carbapenemase dissemination is structured by lineage, mobility, and ecology across One Health systems

description: This dataset contains the curated metadata underlying the study “Phylogeny-guided correction reveals that carbapenemase dissemination is structured by lineage, mobility, and ecology across One Health systems.” The file provides a phylogeny-informed, quality-controlled representation of carbapenemase determinants analyzed across interconnected human, animal, and environmental domains.

The dataset was generated through large-scale curation of publicly available carbapenemase protein sequences, followed by phylogeny-guided annotation correction using curated reference clades. For each entry, taxonomic assignment, genomic localization (plasmid or chromosome), ecological compartment, and annotation confidence were systematically evaluated and harmonized. A normalized confidence recalibration framework was applied to distinguish reliable annotations from ambiguous or misannotated entries prior to downstream ecological and statistical inference.

In addition to corrected annotations, the dataset includes derived variables used in the study’s analytical framework, such as hierarchical taxonomic grouping, ecological categorization, and an interpretable gene-level risk score integrating genomic mobility, ecological breadth, clinical association, and host-range breadth. These metadata enable full reproducibility of the statistical analyses reported in the manuscript, including dominance profiling, mobility stratification, ecological association testing, and risk tier classification.

All sequence accessions referenced in this dataset originate from publicly available databases; no raw sequence data are redistributed here. Instead, this repository provides the value-added, analysis-ready metadata that represent the core intellectual contribution of the study. The dataset is intended to support transparency, reproducibility, and reuse by researchers investigating antimicrobial resistance, carbapenemase evolution, and One Health–oriented genomic surveillance.

Suggested citation

Hassan F. Carbapenemase phylogeny-corrected metadata supporting structured ecological analysis across One Health systems. Zenodo. 2025.https://doi.org/10.5281/zenodo.18040198
DOI: 10.5281/zenodo.18040198
title: Phylogeny-guided correction reveals that carbapenemase dissemination is structured by lineage, mobility, and ecology across One Health systems

description: This dataset contains the curated metadata underlying the study “Phylogeny-guided correction reveals that carbapenemase dissemination is structured by lineage, mobility, and ecology across One Health systems.” The file provides a phylogeny-informed, quality-controlled representation of carbapenemase determinants analyzed across interconnected human, animal, and environmental domains.

The dataset was generated through large-scale curation of publicly available carbapenemase protein sequences, followed by phylogeny-guided annotation correction using curated reference clades. For each entry, taxonomic assignment, genomic localization (plasmid or chromosome), ecological compartment, and annotation confidence were systematically evaluated and harmonized. A normalized confidence recalibration framework was applied to distinguish reliable annotations from ambiguous or misannotated entries prior to downstream ecological and statistical inference.

In addition to corrected annotations, the dataset includes derived variables used in the study’s analytical framework, such as hierarchical taxonomic grouping, ecological categorization, and an interpretable gene-level risk score integrating genomic mobility, ecological breadth, clinical association, and host-range breadth. These metadata enable full reproducibility of the statistical analyses reported in the manuscript, including dominance profiling, mobility stratification, ecological association testing, and risk tier classification.

All sequence accessions referenced in this dataset originate from publicly available databases; no raw sequence data are redistributed here. Instead, this repository provides the value-added, analysis-ready metadata that represent the core intellectual contribution of the study. The dataset is intended to support transparency, reproducibility, and reuse by researchers investigating antimicrobial resistance, carbapenemase evolution, and One Health–oriented genomic surveillance.

Suggested citation

Hassan F. Carbapenemase phylogeny-corrected metadata supporting structured ecological analysis across One Health systems. Zenodo. 2025.https://doi.org/10.5281/zenodo.18040198
DOI: 10.15468/dl.prgp54
title: Occurrence Download

description: A dataset containing 2602525 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Papua New Guinea",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2602525 records from 1587 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064344-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2hsn76
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bolitoglossa omniumsanctorum"
 ]
}

 The dataset includes 22 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064349-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zq5j6c
title: Occurrence Download

description: A dataset containing 4016 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chiridotidae",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4016 records from 149 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064350-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2h15xn
title: CCDC 2295051: Experimental Crystal Structure Determination

description: Related Article: Janusz Szklarzewicz, Maciej Hodorowicz, Anna Jurowska|2024|New J.Chem.|48|13196|doi:10.1039/D4NJ02448F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hmx24
title: CCDC 2313036: Experimental Crystal Structure Determination

description: Related Article: Minami Nakamura, Yukiyasu Kashiwagi, Mitsuhiko Morisue|2024|CrystEngComm|26|3964|doi:10.1039/D4CE00495G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.