cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3697921_d1.v1
title: Additional file 1: Table S1. of Discovery and validation of immune-associated long non-coding RNA biomarkers associated with clinically molecular subtype and prognosis in diffuse large B cell lymphoma

description: Differential expression of lncRNAs between the two major clinically molecular subtypes of DLBCL (ABC and GCB) (p-value &lt; 0.01 and FDRâ
DOI: 10.17632/xrjwsg64pn
title: Data for: Experimental investigation on a new hybrid laser process for surface structuring by vapor pressure on Ti6Al4V

description: Measured structure heights and dimensions for dual laser beam processing.
DOI: 10.3535/jrm-agm-f9z
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wmr-4f2-ycf
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y3h-8rv-gdw
title: Microbioerosional trace fossils

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.15468/dl.db6qj2
title: Occurrence Download

description: A dataset containing 4336 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trilophidia annulata (Thunberg, 1815)"
 ]
}

 The dataset includes 4336 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009637-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/kac-1ek-4gs
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1015702.v1
title: SBML model of a synthetic bacterium

description: SBML whole transcription model of a synthetic organism behaving similarly to <em>E. coli</em>. For the methodology to design the model please read http://www.pnas.org/content/109/38/15277.long You could also check the corresponding Genbank annotated sequence for the whole genome at <br>http://dx.doi.org/10.6084/m9.figshare.1015701 For the methodology to create the sequence please read http://www.biomedcentral.com/1752-0509/7/108
DOI: 10.17632/84yybmrtxx
title: Targeting riboswitches with synthetic small RNAs for metabolic engineering

description: Raw data supporting the work "Targeting riboswitches with synthetic small RNAs for metabolic engineering". The data demonstrate the design and implementation of a new small RNA tool to target bacterial riboswitches. The synthetic sRNA activates gene expression at the transcription level by counteracting the riboswitch's control. The riboswitch-targeting sRNA is suitable for use in cell-free and cellular systems and can be combined into arrays for multiplex riboswitch-targeting.
DOI: 10.3535/0tk-ww1-pk2
title: †Meifodia Williams, 1951

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jd5-88k-dzk
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nrp-7ww-h02
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/d9z9w8k9bn
title: LINF_090019100

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/pd67c2sxj5
title: From Childhood Emotional Maltreatment to Disturbed Self-Organisation: Unraveling the Mediating Role of Parental Attachment

description: In this study, we examined the pathway from childhood emotional maltreatment (CEM) to the dimensions of disturbance in self-organization (DSO), with adolescent parental attachment (APA) as a mediator. We hypothesized that all dimensions of APA would impact the relationship between the dimensions of CEM and DSO. The results revealed significant positive correlations between CEM, APA, and DSO dimensions. Furthermore, path analysis indicated several significant direct and indirect effects.
DOI: 10.3535/x2n-zq3-a8z
title: †Spiriferina d'Orbigny, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vhj-mac-v73
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4wm-6kp-by7
title: †Spiriferina d'Orbigny, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/73b-an8-3p3
title: †Spiriferina d'Orbigny, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28658987.v2
title: Raw data pot experiment <i>Musanga cecropioides</i>

description: Tropical forests in central Africa are under increasing pressure due to slash-and-burn agriculture and charcoal production. Earlier studies have shown that this land-use system is depleting soil nutrients, which might in turn be essential to sustain primary productivity and hence forest regrowth. To explore which nutrients potentially limit tree growth, we conducted a full factorial pot trial using <i>Musanga cecropioides</i>, a keystone pioneer species that plays a critical role in forest or fallow establishment following agricultural abandonment in the Congo basin. Nutrient treatments involved the addition of nitrogen (N), phosphorus (P), and a combined cation treatment (calcium, magnesium, and potassium) and their combinations.Our results demonstrated that the addition of nutrient cations with and without N or P increased tree growth over the course of one year, with the final tree diameter increasing up to 76 % and tree height up to 122 %, compared to treatments without nutrient cations. Particularly strong growth responses were observed during the first 14 weeks of the experiment, where cation addition resulted in an up to 97 % increased diameter growth rate and up to 103 % increased height growth rate. In contrast, adding N and P with or without cations generally had a small negative effect on growth. Analyses of stable carbon and oxygen isotopes on foliar α-cellulose suggest that cation addition increased the photosynthetic activity as intrinsic water-use efficiency (iWUE) did not change significantly, while stomatal conductance increased.These findings further underscore the critical role of cations in the natural regeneration of forests in central Africa, supporting their inclusion in future research focused on secondary forest recovery, old-growth forests, and sustainable agricultural intensification.
DOI: 10.3535/zkr-ckk-s7a
title: †Atrypa Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zmc-lg5-kcv
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tbt-kvw-5qg
title: Tettragonis C.E.I. von Eichwald, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yz4-b8v-rmh
title: †Spiriferina d'Orbigny, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/2xq-qz4-hxg
title: Tettragonis C.E.I. von Eichwald, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nbz-zq6-m07
title: Craniiformea Popov, Basset, Holmer & Laurie, 1993

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t5s-kj6-j1b
title: Microbioerosional trace fossils

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xqk-36m-pb6
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14035613.v1
title: Metadata record for: Creation and validation of a chest X-ray dataset with eye-tracking and report dictation for AI development

description: This dataset contains key characteristics about the data described in the Data Descriptor Creation and validation of a chest X-ray dataset with eye-tracking and report dictation for AI development. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.26699363.v1
title: Additional file 12 of An in-depth evaluation of metagenomic classifiers for soil microbiomes

description: Additional file 12. SoilGenomeDB: Comprehensive metadata of soil-specific bacterial, archaeal, and fungal genomes from NCBI.
DOI: 10.17632/482jm5cv77
title: DCA++: A software framework to solve correlated electron problems with modern quantum cluster methods

description: We present the first open release of the DCA++ project, a high-performance research software framework to solve quantum many-body problems with cutting edge quantum cluster algorithms. DCA++ implements the dynamical cluster approximation (DCA) and its DCA+ extension with a continuous self-energy. The algorithms capture nonlocal correlations in strongly correlated electron systems, thereby giving insight into high-Tc superconductivity. The code’s scalability allows efficient usage of systems at all scales, from workstations to leadership computers. With regard to the increasing heterogeneity of modern computing machines, DCA++ provides portable performance on conventional and emerging new architectures, such as hybrid CPU–GPU, sustaining multiple petaflops on ORNL’s Titan and CSCS’ Piz Daint supercomputers. Moreover, we show how sustainable and scalable development of the code base has been achieved by adopting standard techniques of the software industry. These include employing a distributed version control system, applying test-driven development and following continuous integration.
DOI: 10.17632/jsb7hdn8v6
title: Creativity in Football: A qualitative investigation

description: Semi-structured interview anonymised transcripts.
DOI: 10.3535/p83-z7b-l24
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/znn-8vk-w6b
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6m3-xzy-vxt
title: †Spiriferinae King, 1846

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4ma-fk6-vzk
title: †Glassia Davidson, 1881

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/eqf-1mh-ssh
title: †Glassia Davidson, 1881

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0ej-vmj-043
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kdh-fas-b64
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1136081_d85
title: Ex3R43C2 NR2B-3 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.28672664.v2
title: <b>Exploring Age-related Differences in the Levels and Causes of News Media Trust in China: Generational or</b> <b>Age Effects?</b>

description: Models and results that used in the corresponding paper.
DOI: 10.17632/44t976dyrj
title: fwXmachina example: Anomaly detection for two photons and two jets

description: This dataset provides a ROOT file with three trees:
- "SM" includes a cocktail of events of all standard model processes with final state jjyy, where y denotes a photon.
- "H125_a10a70" includes events from the BSM decay H --&gt; a1 a2, for Higgs mass of 125 GeV and Higgs-like scalars a1 [10 GeV] and a2 [70 GeV]. These decay further as a1 --&gt; yy, a2 --&gt; jj
- "H70_a5a50" includes events from the BSM decay H --&gt; a1 a2, for Higgs mass of 70 GeV and Higgs-like scalars a1 [5 GeV] and a2 [50 GeV]. These decay further as a1 --&gt; yy, a2 --&gt; jj

Each tree contains the variables j1pT, j2pT, y1pT, y2pT, denoting the transverse momentum of the leading and subleading jets and photons, the variables deltaRjj and deltaRyy, denoting the distance in eta-phi coordinates between the jets and between the photons, and the variables mjj and myy, denoting the invariant mass of the dijet system and the diphoton system. If an event has fewer than 2 jets, mjj and deltaRjj will be 0. Similarly, if an event has fewer than 2 photons, myy and deltaRyy will be 0.

All events were produced with MadGraph. BSM decays and hadronization were performed with Pythia8 with the ATLAS AZ17 tune. Showering, event reconstruction, and detector simulation was performed with Delphes with the CMS detector card. Pseudorapidity/phi coordinates were used with eta between -4.9--&gt;4.9 and phi between -pi--&gt;pi. No pileup was applied. All Higgs production is via the gluon-gluon fusion (ggF) channel. In MadGraph, the Higgs effective field theory (HEFT) model is used for all signal and background production.

This data is used in https://arxiv.org/abs/2304.03836.
DOI: 10.17632/bw5h7y9xk8
title: Pore Habit of Gas in Gassy Sediments - Database (Part 4)

description: Data access
DOI: 10.3535/0tm-seq-1bn
title: Calcite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/961-wgz-vyv
title: Acanthodii

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/j578n3fpkx
title: Experimental data for strain rate sensitivity, microstructure variations, and stress-assisted β → α'' phase transformation investigation on the mechanical behavior of dual-phased titanium alloys

description: Data required to reproduce the findings of the following publication: Kartik Kapoor, Priya Ravi, Diwakar Naragani, Jun-Sang Park, Jonathan D. Almer, Michael D. Sangid, Strain rate sensitivity, microstructure variations, and stress-assisted β → α” phase transformation investigation on the mechanical behavior of dual-phased titanium alloys, Materials Characterization, 2020, 110410, ISSN 1044-5803, https://doi.org/10.1016/j.matchar.2020.110410. The data consists of one Excel file with 8 sheets. Each sheet corresponds to the following figures in the paper: Sheet1 (Fig. 1b): Stress-strain curves for the alloys. Sheet2 (Fig. 3): SRS values corresponding to macroscopic strain for the alloys. Sheet3 (Fig. 4): Lattice strains corresponding to macroscopic strain for the alloys. Sheet4 (Fig. 5): Lattice hardening corresponding to applied stress for the alloys. Sheet5 (Fig. 7c): Lattice strain evolution corresponding to macroscopic strain in Ti-6246. Sheet6 (Fig. 7d): Volume fraction of the different phases corresponding to macroscopic strain in Ti-6246 specimen. Sheet7 (Fig. 8): Experimental and analytical lattice strain in α" phase in Ti-6246. Sheet8 (Fig. C1): Axial and transverse lattice strains corresponding to macroscopic strain for the alloys.
DOI: 10.3535/6mh-mfd-mqg
title: †Atrypida Rzhonsnitskaya, 1960

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6vf-sxn-ye0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/d7k3xzkf37
title: Source code for fitness landscape optimization algorithm

description: The proposed study is based on a new idea of the fitness landscape optimization process for different classes of replicator systems. Here, we include the repository describing the numerical calculations we performed. The code is written in C ++ . In the first part, we calculate the evolutionary dynamics of the bi-hypercycle system. In the second part, we examine the evolution of the system with new species inclusion.
DOI: 10.3535/3kp-j1s-049
title: Acanthodii

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ezm-tz8-qh9
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.17134247.v8
title: Semantic Priming - RTs and Accuracy (database by participants)

description: This database shows the RTs and accuracy values for English and Chinese words during a semantic priming task (database by participants)
DOI: 10.17632/rzfwmgyf5c
title: Data for "Labour protection laws and the drain on productivity: Evidence from India"

description: This paper looks at the effect of employment protection legislation (EPL) in India. It concludes that EPL shifts formal sector jobs from young to old and reduces total factor productivity. The main data sets are the National Sample Survey (NSS) and the Annual Survey of Industries (ASI). There are three files: make_tables_SCHWAB_may_9_2019.do creates tables using Stata and does some minor data manipulations. nss_final.dta and asi_final.dta are Stata data files that include the components of those datasets that I used in the analysis. Please contact me (dschwab@holycross.edu) with any questions.
DOI: 10.3535/1t0-5qx-esh
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mkc-x9s-761
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/7zyyvj47vt
title: LINF_300027600

description: DUF155 domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.3535/7v4-1pe-0j7
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w96-7za-fsc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/2eq-vzl-ykt
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qf0-y9l-k1g
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1050094.v1
title: Multiple Parenting Phylogeny Dataset 1.0

description: This material contains the description and the links where to find the datasets used in the evaluation of Multiple Parenting Phylogeny Evaluation
DOI: 10.17632/w7kkmtz56p
title: Exogenous abscisic acid mitigates chilling injury in zucchini during cold storage by eliciting a time-dependent shaping of specialized metabolites

description: SUPPLEMENTARY MATERIAL
File S1. References on the detailed description of the UHPLC/QTOF-HRMS approach applied on zucchini exocarps samples.

Table S1. Dataset of annotated compounds by UHPLC/QTOF-HRMS approach, using the database PlantCyc (https://plantcyc.org). For each compound, the metabolite name, abundance values, retention time (min), mass (u), and molecular formula were provided.

Table S2. List of VIP markers associated with OPLS models on the untargeted metabolic profile of exocarps from zucchini fruits under cold storage (at 0, 1, 5, and 14 days) untreated (control) or treated with ABA (ABA). For each compound, the VIP score (threshold = 1.0), standard error, and logFC values of ABA vs. control were provided.

Table S3. List of significant compounds subjected to pathway analysis. Compounds show a differential abundance (FC &gt; 2 or FC &lt; -2) and statistically significant differences according to one-way ANOVA and Tukey HSD post hoc test (p &lt; 0.05) with respect to harvest conditions at day 0. For each compound, the metabolite name, logFC values of each treatment with respect to day 0, and the ontology were provided.

Table S4. Dataset of annotated compounds by UPLC/QTOF-MS approach, using the database Phenol Explorer (https://phenol-explorer.eu). For each compound, the metabolite name, phenolic class and subclass, abundance values, retention time (min), mass (u), and molecular formula were provided.

Table S5. List of VIP markers associated with OPLS models on the phenolic profile of exocarps from zucchini fruits under cold storage (at 0, 1, 5, and 14 days) untreated (control) or treated with ABA (ABA). For each compound, the VIP score (threshold = 1.0), standard error, and logFC values of ABA vs. control were provided.
Figure S1.

Figure S1. Hierarchical cluster analysis of the untargeted phenolic profile of exocarps from zucchini fruits under cold storage (at 0, 1, 5, and 14 days) untreated (control) or treated with ABA (ABA). Clustering was performed according to the fold change-based heatmap, baselined to the median values of all samples (Euclidean distance, Ward’s algorithm).
DOI: 10.25377/sussex.22118291.v1
title: Dataset for 'Sow Wild! Effective methods and identification bias in pollinator-focused experimental citizen science'

description: Data for paper published in Citizen Science: Theory and Practice (Vol 8 Issue 1, 1st June, 2023) Method_Insect tab contains the count (abundance) of the focal insect groups according to sampling method (pan trap x 4 colour; yellow stciky traps; insect watch) by site (citizen scientist unique identifier), month, treatment (control (c); 10m away (10m), wildflower patch (WF)) <br> Comparison tab contains the paired pan trap data - counts of the focal insect groups according to citizen scinentist or reearcher. <br> Richness_pan trap tab contains the bee richness (species) according to the different pan trap colours. <br> Abstract <br> A common debate on the value of citizen science projects is the accuracy of data collected and the validity of conclusions drawn. ‘Sow Wild!’ was a hypothesis-driven citizen science project which investigated the benefits of sowing a 4m2 mini-meadow in private gardens and allotments to attract beneficial insects. The use of researcher-verified specimen-based methods (pan traps, yellow sticky traps) and observational insect watches allowed investigation of potential bias in identification skills and sampling methods conducted by citizen scientists. For bumblebees and honeybees, identification of pan trap insect specimens was similar between researchers and citizen scientists, but solitary bees were possibly misidentified as social wasps or hoverflies. Key results of the Sow Wild! project differed between specimen-based and observation-only data sets, probably due to unconscious bias, such that incorrect conclusions would have been drawn if we had relied solely on observations made by citizen scientists. Comparing the efficiency of sampling methods, insect watches produced the most insect observations overall. Yellow sticky traps collected more solitary wasps, social wasps, hoverflies and honeybees than pan traps. There was also variation in the abundance of insects caught according to the four pan trap colours. While all of these sampling methods can be successfully incorporated into citizen science projects to monitor a range of flying insects in urban landscapes, we recommend that verification of data by taxonomic experts is a valuable component of hypothesis-led citizen science projects, and increased training is required if target taxa include less conspicuous insect groups.
DOI: 10.3535/f0m-fky-hfr
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.