cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23714052
title: Longitudinal plasma proteome profiling reveals the dynamic biomarkers for prediction of cetuximab therapy response in colorectal cancer patients

description: Cetuximab therapy is the major treatment for colorectal cancer (CRC), but drug resistance limits its effectiveness. Here, we perform longitudinal and deep proteomic profiling of 641 plasma samples originated from 147 CRC patients (CRCs) undergoing cetuximab therapy with multi-course treatment, and 90 healthy controls (HCs). COL12A1, THBS2, S100A8, and S100A9 are screened as potential proteins to distinguish CRCs from HCs both in plasma and tissue validation cohorts. We identify the potential molecular features and biomarkers (RRAS2, MMP8, FBLN1, RPTOR, and IMPDH2) for the initial response prediction. In a longitudinal setting, we identify two clusters with distinct fluctuations and constructed the predictive model with high accuracy to predict the longitudinal response in the multi-course cetuximab treatment, which is further validated in the independent cohort. This study reveals the heterogeneity of different potential biomarkers for tumor diagnosis, the initial response prediction and longitudinal response prediction respectively in the first course and multi-course cetuximab treatment, may ultimately be useful in monitoring and intervention strategies in the management of CRC.
DOI: 10.6084/m9.figshare.23714052.v1
title: Longitudinal plasma proteome profiling reveals the dynamic biomarkers for prediction of cetuximab therapy response in colorectal cancer patients

description: Cetuximab therapy is the major treatment for colorectal cancer (CRC), but drug resistance limits its effectiveness. Here, we perform longitudinal and deep proteomic profiling of 641 plasma samples originated from 147 CRC patients (CRCs) undergoing cetuximab therapy with multi-course treatment, and 90 healthy controls (HCs). COL12A1, THBS2, S100A8, and S100A9 are screened as potential proteins to distinguish CRCs from HCs both in plasma and tissue validation cohorts. We identify the potential molecular features and biomarkers (RRAS2, MMP8, FBLN1, RPTOR, and IMPDH2) for the initial response prediction. In a longitudinal setting, we identify two clusters with distinct fluctuations and constructed the predictive model with high accuracy to predict the longitudinal response in the multi-course cetuximab treatment, which is further validated in the independent cohort. This study reveals the heterogeneity of different potential biomarkers for tumor diagnosis, the initial response prediction and longitudinal response prediction respectively in the first course and multi-course cetuximab treatment, may ultimately be useful in monitoring and intervention strategies in the management of CRC.
DOI: 10.5281/zenodo.10598487
title: 2-dimensional distribution data of Antarctic Toothfish prey

description: Habitat files of 28 Antarctic Toothfish (Dissostichus mawsoni) prey species and the Antarctic Toothfish itself, regridded to the FESOM-REcoM model grid, in NetCDF format. For use in article '21st-century environmental change decreases habitat overlap of Antarctic toothfish (Dissostichus mawsoni) and its prey'.

 

This dataset is a collection of the following:

1) 2-dimensional distribution data for 3 squid species, derived from Raymond et al. (2015)

2) 2-dimensional distribution data for 25 prey species and the Antarctic Toothfish, derived from AquaMaps distribution data

3) the model grid file.

 

A species is present in a certain gridcell when its value is 1, elsewhere the species is considered absent.

 

1)

Original files for the 3 squid species galiteuthis glacialis, kondakovia longimana and mesonychoteuthis hamiltoni are taken from previously published data of Raymond et al. (2015) and regridded to the FESOM-REcoM model grid. These squid species are considered to have their habitat anywhere where habitat suitability in the original Raymond et al. (2015) dataset exceeds the habitat suitability thresholds of 0.228 for Galiteuthis glacialis, 0.281 for Kondakovia longimana and 0.121 for Mesonychoteuthis hamiltoni (threshold values as in Xavier et al. (2016), personal communication with Ben Raymond 16.01.2023 to get exact values). These data have an original resolution of 0.1x0.1 degrees (regular longitude-latitude grid).

2)

The 25 files taken from AquaMaps start with Default_* or Reviewed_* and are the native predicted range data as provided by Kaschner et al. (2019). They were shared by Kathleen Kesner-Reyes from AquaMaps in March and April 2023 after being reviewed by her for correctness and actuality. The files that start with Reviewed_* have had adjustments made to the original Default_* based on this review, which is described in more detail on the AquaMaps website. These data have an original resolution of 0.5x0.5 degrees (regular longitude-latitude grid).

3)

The model grid file 'Mesh_ancillary_information_v20220919.nc' contains the longitude and latitude data needed for regridding to the FESOM-REcoM model grid. Regridding was done using CDO version 1.9.6 (http://mpimet.mpg.de/cdo; developed by U. Schulzweida) and CDO function 'remaplaf', which performs largest area fraction remapping.

 

References

Xavier, J.C., Raymond, B., Jones, D.C. et al. Biogeography of Cephalopods in the Southern Ocean Using Habitat Suitability Prediction Models. Ecosystems 19, 220–247 (2016). https://doi.org/10.1007/s10021-015-9926-1

Raymond, B., Xavier, J., Griffiths, H., Jones, D. (2015) Habitat suitability predictions for 15 species of cephalopods in the Southern Ocean, Ver. 1,  Australian Antarctic Data Centre - doi:10.4225/15/563AC33450A28, Accessed: 2023-01-16

Kaschner, K., Kesner-Reyes, K., Garilao, C., Segschneider, J., Rius-Barile, J. Rees, T., & Froese, R. (2019, October). AquaMaps: Predicted range maps for aquatic species. Retrieved from https://www.aquamaps.org.
DOI: 10.6084/m9.figshare.24935178.v1
title: Mesoporous Carbon Spheres with Programmable Interiors as Efficient Nanoreactors for H2O2 Electrosynthesis

description: The nanoreactor holds great promise as it emulates the natural processes of living organisms to facilitate chemical reactions, offering immense potential in catalytic energy conversion owing to its unique structural functionality. Here, we propose the utilization of precisely engineered carbon spheres as building blocks, integrating micromechanics and controllable synthesis to explore their catalytic functionalities in two-electron oxygen reduction reactions. After conducting rigorous experiments and simulations, we present compelling evidence for the enhanced mass transfer and microenvironment modulation effects offered by these mesoporous hollow carbon spheres, particularly when possessing a suitably sized hollow architecture. Impressively, the pivotal achievement lies in the successful screening of a potent, selective, and durable two-electron oxygen reduction reaction catalyst for the direct synthesis of medical-grade hydrogen peroxide disinfectant. Serving as an exemplary demonstration of nanoreactor engineering in catalyst screening, this work highlights the immense potential of various well-designed carbon-based nanoreactors in extensive applications.
DOI: 10.6084/m9.figshare.24935178
title: Mesoporous Carbon Spheres with Programmable Interiors as Efficient Nanoreactors for H2O2 Electrosynthesis

description: The nanoreactor holds great promise as it emulates the natural processes of living organisms to facilitate chemical reactions, offering immense potential in catalytic energy conversion owing to its unique structural functionality. Here, we propose the utilization of precisely engineered carbon spheres as building blocks, integrating micromechanics and controllable synthesis to explore their catalytic functionalities in two-electron oxygen reduction reactions. After conducting rigorous experiments and simulations, we present compelling evidence for the enhanced mass transfer and microenvironment modulation effects offered by these mesoporous hollow carbon spheres, particularly when possessing a suitably sized hollow architecture. Impressively, the pivotal achievement lies in the successful screening of a potent, selective, and durable two-electron oxygen reduction reaction catalyst for the direct synthesis of medical-grade hydrogen peroxide disinfectant. Serving as an exemplary demonstration of nanoreactor engineering in catalyst screening, this work highlights the immense potential of various well-designed carbon-based nanoreactors in extensive applications.
DOI: 10.6084/m9.figshare.25132580
title: Supplementary Material for: Endoscopic Hemostatic Treatment with a Novel Self-assembling Peptide Gel for Precut Fistulotomy-related Bleeding

description: Introduction: Precut fistulotomy is of interest as one of the salvage techniques for selective bile duct cannulation (SBDC) using endoscopic retrograde cholangiopancreatography (ERCP). Of the various endoscopic treatments reported to date for bleeding associated with papillotomy incision, endoscopic hemostasis treatment with a novel self-assembling peptide (SAP) matrix-forming gel (TDM-621) (3-D Matrix Ltd., Tokyo, Japan) remains only insufficiently reported in the literature. 
Case presentation: We herein report 6 cases of precut fistulotomy-related bleeding successfully treated with endoscopic hemostasis treatment with TDM-621, i.e., 5 and 1 cases during and after precut fistulotomy, respectively, in 2 males and 4 females aged 68 to 96 years (mean age, 85 years), 3 of whom had been on antithrombotic drugs. Types of bleeding treated included oozing bleeding (n = 5) and oozing bleeding from a visible vessel (n = 1). In all cases, complete hemostasis was achieved with TDM-621 without causing rebleeding.
Conclusion: Endoscopic hemostasis with TDM-621 may prove effective for precut fistulotomy-related bleeding and represent a potential modality of first choice in hemostasis. In addition, endoscopic hemostasis with combined modality therapy using TDM-621 and endoscopic hemoclips may prove effective for bleeding from visible vessels.
DOI: 10.6084/m9.figshare.25132580.v1
title: Supplementary Material for: Endoscopic Hemostatic Treatment with a Novel Self-assembling Peptide Gel for Precut Fistulotomy-related Bleeding

description: Introduction: Precut fistulotomy is of interest as one of the salvage techniques for selective bile duct cannulation (SBDC) using endoscopic retrograde cholangiopancreatography (ERCP). Of the various endoscopic treatments reported to date for bleeding associated with papillotomy incision, endoscopic hemostasis treatment with a novel self-assembling peptide (SAP) matrix-forming gel (TDM-621) (3-D Matrix Ltd., Tokyo, Japan) remains only insufficiently reported in the literature. 
Case presentation: We herein report 6 cases of precut fistulotomy-related bleeding successfully treated with endoscopic hemostasis treatment with TDM-621, i.e., 5 and 1 cases during and after precut fistulotomy, respectively, in 2 males and 4 females aged 68 to 96 years (mean age, 85 years), 3 of whom had been on antithrombotic drugs. Types of bleeding treated included oozing bleeding (n = 5) and oozing bleeding from a visible vessel (n = 1). In all cases, complete hemostasis was achieved with TDM-621 without causing rebleeding.
Conclusion: Endoscopic hemostasis with TDM-621 may prove effective for precut fistulotomy-related bleeding and represent a potential modality of first choice in hemostasis. In addition, endoscopic hemostasis with combined modality therapy using TDM-621 and endoscopic hemoclips may prove effective for bleeding from visible vessels.
DOI: 10.6084/m9.figshare.25132508
title: Gecco 2024 Input and Result Data

description: Input files used for an multi-objective optimization of an flight sequence. Results of the optimization of the test scenarios using genetic algorithms.
DOI: 10.34740/kaggle/dsv/7537589
title: 📒 Meta Kaggle ported to MS SQL SERVER 2022 DB
DOI: 10.34740/kaggle/dsv/7537653
title: Egypt Gold Prices | Daily Updated
DOI: 10.34740/kaggle/dsv/7537663
title: OnlineFree
DOI: 10.34740/kaggle/dsv/7537662
title: AutoXGB
DOI: 10.25326/624
title: LIAISE_RAINN_SMC_24HRAIN_L3

description: Accumlated precipitation during 24 hours using radar and rain gauges.
DOI: 10.5281/zenodo.10608668
title: Venues Published on Container Risks and Vulnerabilities.

description: A list of all venues that published papers on container risks and vulnerabilities.
DOI: 10.5281/zenodo.10608669
title: Venues Published on Container Risks and Vulnerabilities.

description: A list of all venues that published papers on container risks and vulnerabilities.
DOI: 10.5281/zenodo.10604547
title: Quantum Chemical Data – Reversible Photoinduced Ligand Substitution in a Luminescent Chromium(0) Complex

description: Simulated ground and excited state properties of [Cr(Ltri)2],its THF adduct [Cr(Ltri)2(THF)] and THF as obtained at the B3LYP/def2svp level of theory within THF (PCM). Both complex were investigated within singlet as well as within triplet multiplicity as indicated by “1” and “3” in the labels.

The folder of each system (besides “THF”) contains the charge density differences (CDDs) of dipole-allowed transitions contributing to the electronic absorption, as well as key molecular frontier orbitals (1[Cr(Ltri)2]).

The spin density of the relaxed triplet ground state (T1) and CDDs of spin and dipole allowed triplet-triplet transitions are given. These transitions are correlated to the excited-state absorption signals as investigated by transient absorption spectroscopy.

All fully relaxed equilibrium structures, i.e., S0 and T1 are provided as xyz files within the respective folders.
DOI: 10.5281/zenodo.10604548
title: Quantum Chemical Data – Reversible Photoinduced Ligand Substitution in a Luminescent Chromium(0) Complex

description: Simulated ground and excited state properties of [Cr(Ltri)2],its THF adduct [Cr(Ltri)2(THF)] and THF as obtained at the B3LYP/def2svp level of theory within THF (PCM). Both complex were investigated within singlet as well as within triplet multiplicity as indicated by “1” and “3” in the labels.

The folder of each system (besides “THF”) contains the charge density differences (CDDs) of dipole-allowed transitions contributing to the electronic absorption, as well as key molecular frontier orbitals (1[Cr(Ltri)2]).

The spin density of the relaxed triplet ground state (T1) and CDDs of spin and dipole allowed triplet-triplet transitions are given. These transitions are correlated to the excited-state absorption signals as investigated by transient absorption spectroscopy.

All fully relaxed equilibrium structures, i.e., S0 and T1 are provided as xyz files within the respective folders.
DOI: 10.34740/kaggle/dsv/7537656
title: LUFlow Network Intrusion Detection Data Set
DOI: 10.4121/c0e06752-1dad-4486-9c44-45ac18916c22
title: Dataset for "Multisine impedimetric monitoring with an in-depth distribution of relaxation times analysis of WE43 and AZ31 magnesium alloys corrosion"

description: This dataset contains raw data from the publication “Multisine impedimetric monitoring with an in-depth distribution of relaxation times analysis of WE43 and AZ31 magnesium alloys corrosion”. Measurement, Volume 222, 2023, 113683, ISSN 0263-2241, https://doi.org/10.1016/j.measurement.2023.113683. The data was collected at Jerzy Haber Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences (Poland) and Gdansk University of Technology (Poland). All data are provided under CC0 license. The dataset includes Scanning electron microscopy images (.tiff format); X-ray photoelectron spectroscopy spectra (.vgd format); Atomic force microscopy files (.gwd format); Electrochemical impedance spectra (.txt format); Distribution of relaxation time analysis files (.txt format); Inductively coupled plasma optical emission spectroscopy files (.xls). Dzmitry Kharytonau gratefully acknowledges the financial support of this study by the National Science Centre (Poland) under research Grant Sonatina no. 2021/40/C/ST5/00266. This work was also supported by Gdansk University of Technology under the Aurum Supporting International Research Team Building – ‘Excellence Initiative – Research University’ [grant number: 2/2021/IDUB/II.1.3].
DOI: 10.4121/c0e06752-1dad-4486-9c44-45ac18916c22.v1
title: Dataset for "Multisine impedimetric monitoring with an in-depth distribution of relaxation times analysis of WE43 and AZ31 magnesium alloys corrosion"

description: This dataset contains raw data from the publication “Multisine impedimetric monitoring with an in-depth distribution of relaxation times analysis of WE43 and AZ31 magnesium alloys corrosion”. Measurement, Volume 222, 2023, 113683, ISSN 0263-2241, https://doi.org/10.1016/j.measurement.2023.113683. The data was collected at Jerzy Haber Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences (Poland) and Gdansk University of Technology (Poland). All data are provided under CC0 license. The dataset includes Scanning electron microscopy images (.tiff format); X-ray photoelectron spectroscopy spectra (.vgd format); Atomic force microscopy files (.gwd format); Electrochemical impedance spectra (.txt format); Distribution of relaxation time analysis files (.txt format); Inductively coupled plasma optical emission spectroscopy files (.xls). Dzmitry Kharytonau gratefully acknowledges the financial support of this study by the National Science Centre (Poland) under research Grant Sonatina no. 2021/40/C/ST5/00266. This work was also supported by Gdansk University of Technology under the Aurum Supporting International Research Team Building – ‘Excellence Initiative – Research University’ [grant number: 2/2021/IDUB/II.1.3].
DOI: 10.15468/dl.awdbz5
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Litsea fosbergii Kosterm."
 ]
}

 The dataset includes 11 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044046-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b2cj5q
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lessertia thodei L.Bolus"
 ]
}

 The dataset includes 40 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044047-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8bfxk
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Linostoma persimile Craib"
 ]
}

 The dataset includes 46 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044048-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ce5ss7
title: Occurrence Download

description: A dataset containing 411 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lonicera tschonoskii Maxim."
 ]
}

 The dataset includes 411 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044049-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rqnh8a
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is ada9d123-ddb4-467d-8891-806ea8d94230",
 "TaxonKey is Brachyplatystoma filamentosum (Lichtenstein, 1819)"
 ]
}

 The dataset includes 17 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044050-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xptsxk
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidostemon pedunculosus Hook.f. & Thomson"
 ]
}

 The dataset includes 26 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044051-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ucqxp6
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Limnophyton fluitans Graebn."
 ]
}

 The dataset includes 59 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044052-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zq7rpj
title: Occurrence Download

description: A dataset containing 7876 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atherina presbyter Cuvier, 1829"
 ]
}

 The dataset includes 7876 records from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044053-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pd8qkc
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Litsea foveola Kosterm."
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044055-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pgtdkb
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lessertia tomentosa (Thunb.) DC."
 ]
}

 The dataset includes 67 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044056-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y5mgqz
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Linum acuticarpum C.M.Rogers"
 ]
}

 The dataset includes 16 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044057-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t8squv
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lonicera tubuliflora Rehder"
 ]
}

 The dataset includes 69 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044058-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ghq2xd
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidostemon rosularis (K.C.Kuan & Z.X.An) Al-Shehbaz"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044059-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.