cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9959687
title: MammalData

description: Mammal data used in Chevalier et al.<b> Revisiting the abundant-center hypothesis: a niche perspective.</b><br><b><br></b>Abundance data were from:<br>Thibault, K.M., Supp, S.R., Giffin, M., White, E.P. & Ernest, S. (2011). Species composition and abundance of mammalian communities. Ecology, 92, 2316–2316.<br>Body size estimates were from:<br>Jones, K.E., Bielby, J., Cardillo, M., Fritz, S.A., O’Dell, J., Orme, C.D.L. et al. (2009). Pantheria: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology, 90, 2648–2648.<br><br>
DOI: 10.6084/m9.figshare.9959699.v1
title: Fish data

description: Fish data used in Chevalier et al.<b> Revisiting the abundant-center hypothesis: a niche perspective.</b><br><br>Abundance data were from:<br>Knouft JH, Anthony MM (2016) Climate and local abundance in freshwater fishes. Royal Society Open Science 3(6): 160093. http://dx.doi.org/10.1098/rsos.160093Additionally, please cite the Dryad data package:<br>Body size estimates were from:<br>Froese, R. & Pauly, D. (2000). FishBase 2000: Concepts Designs and Data Sources, vol. 1594. WorldFish, ICLARM, Los Ba~nos, Laguna, Philippines.<br>
DOI: 10.6084/m9.figshare.9959669
title: Data ready for analyses

description: The four datasets ready for analyses and used in Chevalier et al. <b>Revisiting the abundant-center hypothesis: a niche perspective.</b>
DOI: 10.6084/m9.figshare.9959687.v1
title: MammalData

description: Mammal data used in Chevalier et al.<b> Revisiting the abundant-center hypothesis: a niche perspective.</b><br><b><br></b>Abundance data were from:<br>Thibault, K.M., Supp, S.R., Giffin, M., White, E.P. & Ernest, S. (2011). Species composition and abundance of mammalian communities. Ecology, 92, 2316–2316.<br>Body size estimates were from:<br>Jones, K.E., Bielby, J., Cardillo, M., Fritz, S.A., O’Dell, J., Orme, C.D.L. et al. (2009). Pantheria: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology, 90, 2648–2648.<br><br>
DOI: 10.6084/m9.figshare.9959666
title: ebird

description: Bird data used in Chevalier et al.<b> Revisiting the abundant-center hypothesis: a niche perspective.</b><b><br></b>For eBird data see:<br><br>Sullivan, B.L., Wood, C.L., Iliff, M.J., Bonney, R.E., Fink, D. & Kelling, S. (2009). ebird: a citizen-based bird observation network in the biological sciences. Biol. Cons., 142, 2282–2292.<br>Body size were from :<br>Nathan P. Myhrvold, Elita Baldridge, Benjamin Chan, Dhileep Sivam, Daniel L. Freeman, and S. K. Morgan Ernest. 2015. An amniote life-history database to perform comparative analyses with birds, mammals, and reptiles. Ecology 96:3109. http://dx.doi.org/10.1890/15-0846.1
DOI: 10.6084/m9.figshare.9959696.v1
title: IABSE Task Group 3.1 Benchmark Results. Part 1: Numerical Analysis of a Two-Degree-of-Freedom Bridge Deck Section Based on Analytical Aerodynamics

description: IABSE Task Group 3.1 has the mandate to define reference results for the validation of methodologies and programs used to study both stability and buffeting responses of long-span bridges. These tools for the simulation of the aeroelastic behaviour are fundamental in the safe design of bridges and they should be validated. The working group decided to set up a benchmark procedure consisting of several steps to define reference results for this validation. For each step, contributors use their own methodology to simulate the bridge behaviour using the same input data. All the results are then compared, and reference values are defined through statistical analysis. The benchmark procedure is considered as a three-step problem with substeps of increasing difficulty: Step 1 compares numerical results only, Step 2 is validation against wind tunnel experiments, and Step 3 is validation against full-scale data. In this paper, the contributions and the reference results of the simplest initial substep (1.1a) are presented. It consists of the simulation of the aeroelastic response of a two-degree-of-freedom bridge deck section, with analytical aerodynamic coefficients, forced by turbulent wind. Despite the problem’s simplicity, differences in some contributions are significant, confirming the necessity of having solid references to validate software programs.
DOI: 10.6084/m9.figshare.9959669.v1
title: Data ready for analyses

description: The four datasets ready for analyses and used in Chevalier et al. <b>Revisiting the abundant-center hypothesis: a niche perspective.</b>
DOI: 10.6084/m9.figshare.9959693.v1
title: Mtdh_phylogeny

description: Alignment and phylogeny files referring to the phylogenetic tree presented in Figure 1B of the paper entitled "A New Pathway for Mannitol Metabolism in Yeasts Suggests a Link to the Evolution of Alcoholic Fermentation" by Gonçalves C et al., 2019
DOI: 10.6084/m9.figshare.9959666.v2
title: ebird

description: Bird data used in Chevalier et al.<b> Revisiting the abundant-center hypothesis: a niche perspective.</b><b><br></b>For eBird data see:<br><br>Sullivan, B.L., Wood, C.L., Iliff, M.J., Bonney, R.E., Fink, D. & Kelling, S. (2009). ebird: a citizen-based bird observation network in the biological sciences. Biol. Cons., 142, 2282–2292.<br>Body size were from :<br>Nathan P. Myhrvold, Elita Baldridge, Benjamin Chan, Dhileep Sivam, Daniel L. Freeman, and S. K. Morgan Ernest. 2015. An amniote life-history database to perform comparative analyses with birds, mammals, and reptiles. Ecology 96:3109. http://dx.doi.org/10.1890/15-0846.1
DOI: 10.6084/m9.figshare.9959696.v2
title: IABSE Task Group 3.1 Benchmark Results. Part 1: Numerical Analysis of a Two-Degree-of-Freedom Bridge Deck Section Based on Analytical Aerodynamics

description: IABSE Task Group 3.1 has the mandate to define reference results for the validation of methodologies and programs used to study both stability and buffeting responses of long-span bridges. These tools for the simulation of the aeroelastic behaviour are fundamental in the safe design of bridges and they should be validated. The working group decided to set up a benchmark procedure consisting of several steps to define reference results for this validation. For each step, contributors use their own methodology to simulate the bridge behaviour using the same input data. All the results are then compared, and reference values are defined through statistical analysis. The benchmark procedure is considered as a three-step problem with substeps of increasing difficulty: Step 1 compares numerical results only, Step 2 is validation against wind tunnel experiments, and Step 3 is validation against full-scale data. In this paper, the contributions and the reference results of the simplest initial substep (1.1a) are presented. It consists of the simulation of the aeroelastic response of a two-degree-of-freedom bridge deck section, with analytical aerodynamic coefficients, forced by turbulent wind. Despite the problem’s simplicity, differences in some contributions are significant, confirming the necessity of having solid references to validate software programs.
DOI: 10.6084/m9.figshare.9959666.v1
title: ebird

description: Bird data used in Chevalier et al.<b> Revisiting the abundant-center hypothesis: new insights from recent niche perspectives</b>
DOI: 10.6084/m9.figshare.9959693.v2
title: Supplementary_Material

description: Alignment and phylogeny files referring to the phylogenetic tree presented in Figure 1B and other supplementary material of the paper entitled "A New Pathway for Mannitol Metabolism in Yeasts Suggests a Link to the Evolution of Alcoholic Fermentation" by Gonçalves C et al., 2019.
DOI: 10.6084/m9.figshare.9959696.v3
title: IABSE Task Group 3.1 Benchmark Results. Part 1: Numerical Analysis of a Two-Degree-of-Freedom Bridge Deck Section Based on Analytical Aerodynamics

description: IABSE Task Group 3.1 has the mandate to define reference results for the validation of methodologies and programs used to study both stability and buffeting responses of long-span bridges. These tools for the simulation of the aeroelastic behaviour are fundamental in the safe design of bridges and they should be validated. The working group decided to set up a benchmark procedure consisting of several steps to define reference results for this validation. For each step, contributors use their own methodology to simulate the bridge behaviour using the same input data. All the results are then compared, and reference values are defined through statistical analysis. The benchmark procedure is considered as a three-step problem with substeps of increasing difficulty: Step 1 compares numerical results only, Step 2 is validation against wind tunnel experiments, and Step 3 is validation against full-scale data. In this paper, the contributions and the reference results of the simplest initial substep (1.1a) are presented. It consists of the simulation of the aeroelastic response of a two-degree-of-freedom bridge deck section, with analytical aerodynamic coefficients, forced by turbulent wind. Despite the problem’s simplicity, differences in some contributions are significant, confirming the necessity of having solid references to validate software programs.
DOI: 10.6084/m9.figshare.9959516
title: Data-Change.csv

description: The data contains the water bodies area in China and the change between two epochs.
DOI: 10.6084/m9.figshare.9959516.v2
title: Data-Change.csv

description: The data contains the water bodies area in China and the change between two epochs.
DOI: 10.6084/m9.figshare.9959516.v1
title: Data-Change.csv

description: The data contains the water bodies area in China and the change between two epochs.
DOI: 10.6084/m9.figshare.9959498
title: grid.1018.8

description: What does Australasian Research Look Like Data for institution
DOI: 10.6084/m9.figshare.9959498.v1
title: grid.1018.8

description: What does Australasian Research Look Like Data for institution
DOI: 10.15131/shef.data.9959468
title: Data for paper: "Sensitivity Calculations of High-Speed Optical Receivers based on Electron-APDs"

description: The files in this repository correspond to the results shown in the paper, "Sensitivity Calculations of High-Speed Optical Receivers based on Electron-APDs" published in the IEEE Journal of Lightwave Technology.<br>The file to generate the figures is the Jupyter notebook file "Figures for Sensitivity Calculations of High-Speed Optical Receivers based on Electron-APDs.ipynb" found here https://doi.org/10.15131/shef.data.10069391. This generates all the figures. The contents of "data.zip" must be extracted to a folder called "data" for the notebook to run.
DOI: 10.6084/m9.figshare.9959417
title: Room-level occupant counts and environmental quality from heterogeneous sensing modalities in a smart building

description: This dataset cover room-level occupant counts, airflow, CO2, relative humidity, illuminance, and temperature data from an teaching and office building.
DOI: 10.15131/shef.data.9959468.v1
title: Data for paper: "Sensitivity Calculations of High-Speed Optical Receivers based on Electron-APDs"

description: The files in this repository correspond to the results shown in the paper, "Sensitivity Calculations of High-Speed Optical Receivers based on Electron-APDs" published in the IEEE Journal of Lightwave Technology.<br>The file to generate the figures is the Jupyter notebook file "Figures for Sensitivity Calculations of High-Speed Optical Receivers based on Electron-APDs.ipynb" found here https://doi.org/10.15131/shef.data.10069391. This generates all the figures. The contents of "data.zip" must be extracted to a folder called "data" for the notebook to run.
DOI: 10.6084/m9.figshare.9959288
title: Myocardial motion dataset (preload study) (raw data)

description: The dataset contains raw accelerometer recordings of the heart in an animal model with changing preload.
DOI: 10.6084/m9.figshare.9959369
title: GH13_1_metazoa supplementary data

description: protein alignment of GH13_1 alpha-amylases found in metazoans, Newick tree, protein sequences used in the paper<br>
DOI: 10.6084/m9.figshare.9959285
title: Lists of differentially expressed genes (FC; ESCs and Embryos)

description: Data set of the transcriptome of pig embryonic stem cells and preimplantation embryos. The differentially expressed genes (DEGs) were determined by the TCC package.
DOI: 10.6084/m9.figshare.12867044.v1
title: Supplementary Figure vSCA based on TFs targets

description: Dataset used to assemble Figure vSCA based on TFs targets in SCAtutorial vignette (https://kendomaniac.github.io/SCAtutorial/articles/SCAvignette.html)
DOI: 10.6084/m9.figshare.9959288.v1
title: Myocardial motion dataset (preload study) (raw data)

description: The dataset contains raw accelerometer recordings of the heart in an animal model with changing preload.
DOI: 10.6084/m9.figshare.12867044
title: Supplementary Figure vSCA based on TFs targets

description: Dataset used to assemble Figure vSCA based on TFs targets in SCAtutorial vignette (https://kendomaniac.github.io/SCAtutorial/articles/SCAvignette.html)
DOI: 10.6084/m9.figshare.9959270
title: Myocardial motion dataset (preload study) (processed data)

description: The file contains a dataset of processed myocardial motion data in addition to data from other modalities. The dataset was recorded in animals during interventions altering preload.
DOI: 10.6084/m9.figshare.9959273
title: Supplementary Material for: Initial Experience of Superb Microvascular Imaging for Key Cardiac Views in Foetal Assessment before 15 Weeks Gestation

description: <b><i>Background:</i></b> In the first trimester, ultrasound confirmation of normal or abnormal cardiac anatomy is difficult. B-mode and colour flow Doppler (CFD) are used to assess the foetal heart. Superb microvascular imaging (SMI) can visualise blood flow within the heart and vessels in early gestation. <b><i>Objective:</i></b> We report an initial experience of SMI for visualisation of normal and abnormal cardiac anatomy in the first trimester. <b><i>Methods:</i></b> Transabdominal foetal echocardiography was performed between 11 + 6 and 14 + 3 weeks (Aplio 500 US system, Toshiba Medical Systems, Tokyo, Japan) from January 2017 to December 2017. All scans were performed at a tertiary foetal cardiology unit. To assess the potential utility of the technique for early gestation screening, normal scans were reviewed by foetal medicine trainees with respect to the B-mode, CFD and SMI. Three key views were selected to compare modalities: the 4-chamber view, outflow tracts and the 3-vessel and trachea view (VTV). Visualisation rates of key echocardiographic features of significant cardiac abnormalities by SMI were reviewed. <b><i>Results:</i></b> Fifty-five normal echocardiograms and 34 cardiac abnormalities were included. In the normal heart, when B-mode, CFD and SMI were assessed separately, SMI had the highest rate of visualisation of 4-chamber, outflow tracts and 3-VTV (93, 85 and 83%, respectively). Intra-observer reliability was moderate for SMI of the 3 standard views (kappa 1, 0.64 and 0.64); inter-observer for 4-chamber and outflow tract views was moderate (kappa 0.64 and 0.77). In 29/34 abnormal cases, SMI showed key features, enhancing greyscale visualisation. <b><i>Conclusion:</i></b> SMI has potential to become a useful, complementary modality for early foetal echocardiography. Further prospective studies are warranted to establish the place of the technique in assessment of the first trimester foetal heart.
DOI: 10.6084/m9.figshare.9959282
title: grid.1004.5

description: What does Australasian Research Look Like Data for institution
DOI: 10.6084/m9.figshare.9959285.v2
title: Lists of differentially expressed genes (FC; ESCs and Embryos)

description: Data set of the transcriptome of pig embryonic stem cells and preimplantation embryos. The differentially expressed genes (DEGs) were determined by the TCC package.
DOI: 10.6084/m9.figshare.9959270.v1
title: Myocardial motion dataset (preload study) (processed data)

description: The file contains a dataset of processed myocardial motion data in addition to data from other modalities. The dataset was recorded in animals during interventions altering preload.
DOI: 10.6084/m9.figshare.9959282.v1
title: grid.1004.5

description: What does Australasian Research Look Like Data for institution
DOI: 10.6084/m9.figshare.9959285.v1
title: Lists of differentially expressed genes (FC; ESCs and Embryos)

description: Data set of the transcriptome of pig embryonic stem cells and preimplantation embryos. The differentially expressed genes (DEGs) were determined by the TCC package.
DOI: 10.6084/m9.figshare.9959258
title: Study on utilization of Penaeus vannamei for snack food production

description: Data set
DOI: 10.6084/m9.figshare.9959258.v1
title: Study on utilization of Penaeus vannamei for snack food production

description: Data set
DOI: 10.6084/m9.figshare.9959138
title: NT1F31-60K-flor-sul.fa

description: Using Nanopore Sequencing, tet(X4) repeat region.
DOI: 10.6084/m9.figshare.9959135
title: List of normalized gene expression level (FPKM; ESCs and Embryos)

description: Data set of the transcriptome of pig embryonic stem cells and preimplantation embryos. The expression level was normalized by the HTSeq-count program.
DOI: 10.6084/m9.figshare.9959150
title: James_et_al_2020_BdA_30m_00degr_nadir

description: James et al. (2020) - Mitigating systematic error in topographic models for geomorphic change detection: Accuracy, precision and considerations beyond off-nadir imagery<br>UAV-collected image dataset and associated image coordinates of GCP observations for surveys of la Borgne d'Arolla. See paper for details.<br>30m_00degr_nadir : UAV image data<br>File formats for image observations:.xml file contains GCP image observations (and other data) exported from Photoscan v1.4.2. Can be imported back into PhotoScan (or Metashape) using Import -&gt; Markers.<br>.txt file contains GCP image observations as pixel coordinates given with respect to an origin in the top left image corner (tab-delimited text file). Note that the .txt file will contain a smaller number of observations than the .xml file, because only GCP observations that have been included in the bundle adjustment have been converted to .txt. The .xml files contain some additional unused observations (shown as grey furled flags in PhotoScan).
DOI: 10.6084/m9.figshare.9959129
title: Metadata record for: Noise-free simulation of an FT-IR imaging hyperspectral dataset of pancreatic biopsy core bound by experiment

description: This dataset contains key characteristics about the data described in the Data Descriptor Noise-free simulation of an FT-IR imaging hyperspectral dataset of pancreatic biopsy core bound by experiment. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9959138.v1
title: NT1F31-60K-flor-sul.fa

description: Using Nanopore Sequencing, tet(X4) repeat region.
DOI: 10.6084/m9.figshare.9959150.v1
title: James_et_al_2020_BdA_30m_00degr_nadir

description: James et al. (2020) - Mitigating systematic error in topographic models for geomorphic change detection: Accuracy, precision and considerations beyond off-nadir imagery<br>UAV-collected image dataset and associated image coordinates of GCP observations for surveys of la Borgne d'Arolla. See paper for details.<br>30m_00degr_nadir : UAV image data<br>File formats for image observations:.xml file contains GCP image observations (and other data) exported from Photoscan v1.4.2. Can be imported back into PhotoScan (or Metashape) using Import -&gt; Markers.<br>.txt file contains GCP image observations as pixel coordinates given with respect to an origin in the top left image corner (tab-delimited text file). Note that the .txt file will contain a smaller number of observations than the .xml file, because only GCP observations that have been included in the bundle adjustment have been converted to .txt. The .xml files contain some additional unused observations (shown as grey furled flags in PhotoScan).
DOI: 10.6084/m9.figshare.9959126
title: Supplementary Material for: Estradiol Enables Chronic Corticosterone to Inhibit Pulsatile Luteinizing Hormone Secretion and Suppress Kiss1 Neuronal Activation in Female Mice

description: <b><i>Introduction:</i></b> Two common responses to stress include elevated circulating glucocorticoids and impaired luteinizing hormone (LH) secretion. We have previously shown that a chronic stress level of corticosterone can impair ovarian cyclicity in intact mice by preventing follicular-phase endocrine events. <b><i>Objective:</i></b> This study is aimed at investigating if corticosterone can disrupt LH pulses and whether estradiol is necessary for this inhibition. <b><i>Methods:</i></b> Our approach was to measure LH pulses prior to and following the administration of chronic corticosterone or cholesterol in ovariectomized (OVX) mice treated with or without estradiol, as well as assess changes in arcuate kisspeptin (Kiss1) neuronal activation, as determined by co-expression with c-Fos. <b><i>Results:</i></b> In OVX mice, a chronic 48 h elevation in corticosterone did not alter the pulsatile pattern of LH. In contrast, corticosterone induced a robust suppression of pulsatile LH secretion in mice treated with estradiol. This suppression represented a decrease in pulse frequency without a change in amplitude. We show that the majority of arcuate Kiss1 neurons contain glucocorticoid receptor, revealing a potential site of corticosterone action. Although arcuate <i>Kiss1</i> and <i>Tac2</i> gene expression did not change in response to corticosterone, arcuate Kiss1 neuronal activation was significantly reduced by chronic corticosterone, but only in mice treated with estradiol. <b><i>Conclusions:</i></b> Collectively, these data demonstrate that chronic corticosterone inhibits LH pulse frequency and reduces Kiss1 neuronal activation in female mice, both in an estradiol-dependent manner. Our findings support the possibility that enhanced sensitivity to glucocorticoids, due to ovarian steroid milieu, may contribute to reproductive impairment associated with stress or pathophysiologic conditions of elevated glucocorticoids.