cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.p4d94u
title: Occurrence Download

description: A dataset containing 4705 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hirundo rupestris"
 ]
}

 The dataset includes 4705 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002603-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/cqp-z0k-f50
title: Gramineae Juss.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.3jukuu
title: Occurrence Download

description: A dataset containing 169 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bornmuellera emarginata"
 ]
}

 The dataset includes 169 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002604-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjqupz
title: Occurrence Download

description: A dataset containing 1537 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erigeron canadensis",
 "Country is Estonia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1537 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002606-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16048083
title: Large Scale Jaccard Similarity Profiling of SARS-CoV-2 Spike Mutation Patterns in 6.8 Million Global Genomes

description: This dataset presents a large-scale Jaccard Index analysis of spike protein mutations in over 6.8 million global SARS-CoV-2 genomes. It identifies high-confidence mutation clusters based on strong co-occurrence patterns (Jaccard Index > 0.004, minimum 100 genomes). These mutation pairs many within immunologically or structurally significant spike regions, suggest potential co-evolution, immune escape synergy, or structural compensation. The findings support genomic surveillance, early variant detection, and the rational design of vaccines and therapeutics.

 

Acknowledgment



The underlying spike mutation data used in this analysis was obtained from GVAtlas.org, an independent global variant tracking platform dedicated to inclusive genomic surveillance and mutation impact analysis. We acknowledge the significant contribution of GVAtlas in curating and providing accessible large-scale SARS-CoV-2 variant datasets that enabled this study.
DOI: 10.5281/zenodo.16048084
title: Large Scale Jaccard Similarity Profiling of SARS-CoV-2 Spike Mutation Patterns in 6.8 Million Global Genomes

description: This dataset presents a large-scale Jaccard Index analysis of spike protein mutations in over 6.8 million global SARS-CoV-2 genomes. It identifies high-confidence mutation clusters based on strong co-occurrence patterns (Jaccard Index > 0.004, minimum 100 genomes). These mutation pairs many within immunologically or structurally significant spike regions, suggest potential co-evolution, immune escape synergy, or structural compensation. The findings support genomic surveillance, early variant detection, and the rational design of vaccines and therapeutics.

 

Acknowledgment



The underlying spike mutation data used in this analysis was obtained from GVAtlas.org, an independent global variant tracking platform dedicated to inclusive genomic surveillance and mutation impact analysis. We acknowledge the significant contribution of GVAtlas in curating and providing accessible large-scale SARS-CoV-2 variant datasets that enabled this study.
DOI: 10.15468/dl.6dsarj
title: Occurrence Download

description: A dataset containing 332 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erigeron canadensis",
 "Country is Greece",
 "HasCoordinate is true"
 ]
}

 The dataset includes 332 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002607-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2fv4hm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Antrostomus vociferus)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002610-250717081556266/datasets/export for details.
DOI: 10.15468/dl.5e3nk2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erigeron canadensis",
 "Country is Guyana",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002608-250717081556266/datasets/export for details.
DOI: 10.15468/dl.nu72k8
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Matthiola tatarica"
 ]
}

 The dataset includes 65 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002613-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8y7cw6
title: Occurrence Download

description: A dataset containing 227 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ottelia ovalifolia",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 227 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002609-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7bsrzd
title: Occurrence Download

description: A dataset containing 16815 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ameiva ameiva"
 ]
}

 The dataset includes 16815 records from 236 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002612-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mmhrat
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ambrosia artemisiifolia",
 "Country is Azerbaijan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002614-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15989870
title: pVAE_datasets
title: mice data

description: Recount3 mice data. Curated recount3 gene expression data : no_scrna_rpkm.ftr, pathways data:  extended_plier_pathways.tsv, plier_pathways_processed.tsv .

We have plier model: plier.rds for comparison.

plier.rds - Plier Model

no_scrna_rpkm.ftr  - Gene expression data used to train Plier model

extended_plier_pathways.tsv - Pathways with gene ids

plier_pathways_processed.tsv - Processed pathways with gene symbols
DOI: 10.15468/dl.dhdnu6
title: Occurrence Download

description: A dataset containing 448 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cardamine tangutorum"
 ]
}

 The dataset includes 448 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002615-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.httve8
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erigeron canadensis",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002616-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tx594e
title: Occurrence Download

description: A dataset containing 770 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Calcarius ornatus)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 770 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002618-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.59yk7y
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Calcarius ornatus)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002619-250717081556266/datasets/export for details.
DOI: 10.5281/zenodo.16048900
title: First comparative gut microbiome between Cerambyx cerdo and Cerambyx welensii insect pests for Quercus sp in protect the UNESCO World Heritage 'dehesa' landscape.

description: Data from The V3-V4 region of the 16S rRNA gene of Cerambyx sp were amplified and sequenced using the Illumina iSeq 100 platform. Library preparation followed the Illumina 16S metagenomic library preparation protocol (Illumina:). Library preparation followed the Illumina 16S metagenomic sequencing library preparation protocol (Illumina:https://support.illumina.com/documents/documentation/chemistry_documentation/16s/16s-metagenomic-library-prep-guide-15044223-b.pdf).
DOI: 10.5281/zenodo.16048899
title: First comparative gut microbiome between Cerambyx cerdo and Cerambyx welensii insect pests for Quercus sp in protect the UNESCO World Heritage 'dehesa' landscape.

description: Data from The V3-V4 region of the 16S rRNA gene of Cerambyx sp were amplified and sequenced using the Illumina iSeq 100 platform. Library preparation followed the Illumina 16S metagenomic library preparation protocol (Illumina:). Library preparation followed the Illumina 16S metagenomic sequencing library preparation protocol (Illumina:https://support.illumina.com/documents/documentation/chemistry_documentation/16s/16s-metagenomic-library-prep-guide-15044223-b.pdf).
DOI: 10.15468/dl.bkgq29
title: Occurrence Download

description: A dataset containing 1102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sphenarium purpurascens"
 ]
}

 The dataset includes 1102 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002620-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.unujrn
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Potamogeton perfoliatus",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002621-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bbnug4
title: Occurrence Download

description: A dataset containing 935 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erigeron canadensis",
 "Country is Israel",
 "HasCoordinate is true"
 ]
}

 The dataset includes 935 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002622-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/ll2-44z-lwv
title: Gramineae Juss.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.nyhtun
title: Occurrence Download

description: A dataset containing 407 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rorippa sphaerocarpa"
 ]
}

 The dataset includes 407 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002623-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ctp2u
title: Occurrence Download

description: A dataset containing 25557 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Acris blanchardi)"
 ]
}

 The dataset includes 25557 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002624-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mdzaf7
title: Occurrence Download

description: A dataset containing 6886 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cardamine douglassii"
 ]
}

 The dataset includes 6886 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002625-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/5h3-r99-6r6
title: Rumex arifolius All.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.b8btnw
title: Occurrence Download

description: A dataset containing 2834 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Germany, Italy, Austria)",
 "OccurrenceStatus is Present",
 "TaxonKey is Linum viscosum"
 ]
}

 The dataset includes 2834 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002626-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b8ucbx
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Chironex fleckeri",
 "Year 2000-2025"
 ]
}

 The dataset includes 18 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002627-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.huc9a6
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neuontobotrys amplexicaulis"
 ]
}

 The dataset includes 27 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002628-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9audq8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Calcarius ornatus)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002629-250717081556266/datasets/export for details.
DOI: 10.15468/dl.xstucd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Calcarius ornatus)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002630-250717081556266/datasets/export for details.
DOI: 10.15468/dl.82yv6p
title: Occurrence Download

description: A dataset containing 1344 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erigeron canadensis",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1344 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002631-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16050205
title: StereoMIS split used in Endo-FASt3r

description: This is the split of the StereoMIS dataset we used to evaluate our work: "Endo-FASt3r: Endoscopic Foundation modelAdaptation for Structure from motion", published in MICCAI2025. Please cite our work if you find it useful:

Citation:

@article{zeinoddin2025endo,
  title={Endo-FASt3r: Endoscopic Foundation model Adaptation for Structure from motion},
  author={Zeinoddin, Mona Sheikh and Islam, Mobarakol and Tandogdu, Zafer and Shaw, Greg and Clarkson, Mathew J and Mazomenos, Evangelos and Stoyanov, Danail},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  year={2025},
  organization={Springer}
}
DOI: 10.5281/zenodo.16050206
title: StereoMIS split used in Endo-FASt3r

description: This is the split of the StereoMIS dataset we used to evaluate our work: "Endo-FASt3r: Endoscopic Foundation modelAdaptation for Structure from motion", published in MICCAI2025. Please cite our work if you find it useful:

Citation:

@article{zeinoddin2025endo,
  title={Endo-FASt3r: Endoscopic Foundation model Adaptation for Structure from motion},
  author={Zeinoddin, Mona Sheikh and Islam, Mobarakol and Tandogdu, Zafer and Shaw, Greg and Clarkson, Mathew J and Mazomenos, Evangelos and Stoyanov, Danail},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  year={2025},
  organization={Springer}
}
DOI: 10.15468/dl.sgnbtn
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ambrosia artemisiifolia",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002632-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wmeb93
title: Occurrence Download

description: A dataset containing 1966 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agapanthus praecox",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1966 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002633-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.