cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24235141
title: Supplementary Material for: Giant mature ovarian cystic teratoma in a pediatric patient: case report and literature review.

description: Mature cystic teratomas, also called dermoid cysts, are the most common germ-cell ovarian neoplasms in children. On average, ovarian dermoid cysts are slow-growing neoplasms with a mean size between 6.4 and 7.0 cm that enlarge at a rate of 1.8 mm/year; however, these can reach large dimensions. Giant ovarian tumors are defined as those having a maximum diameter equal to or more than 15 cm; these represent a therapeutic challenge as they increase the risk of wide wound size and surgical invasiveness. In this paper, we present a case of a 10-year-old Hispanic female that complained of abdominal pain, distension, and nausea. Physical examination revealed a mass on the left side of the abdomen and an axial computed tomography found a large pelvic tumor extending to the abdominal region. After a laparotomy approach, pathology evaluation confirmed the diagnosis of mature cystic teratoma. The patient recovered thoroughly and had no complications at a 6-month follow-up. We conducted a literature review including English and Spanish reports about giant ovarian teratomas, we retrieved 16 cases from 2003 to 2023. We concluded that giant ovarian tumors may be underreported, particularly in resource-limited areas where tumors might grow unrecognized, and that English-language bias might play a substantial role in literature reviews involving case reports and case series.
DOI: 10.25582/data.2020-03.1969652/2071483
title: Data for EMSL Project 51127 from March 2020
DOI: 10.25582/data.2020-03.1966070/2071484
title: Data for EMSL Project 51127 from March 2020
DOI: 10.25582/data.2020-03.1968360/2071485
title: Data for EMSL Project 51127 from March 2020
DOI: 10.3886/e117876v4
title: Process data for the AEA Pre-publication Verification Service

description: The data in this repository is administrative data from the processing of pre-publication manuscripts at the American Economic Association's journal. The AEA Data Editor maintains a service to verify the reproducibility of supplementary materials. The data have been anonymized: references to the identify of the replicator, as well as the manuscript identifier of the specific article have been removed at this time. <br>
DOI: 10.5281/zenodo.7389768
title: Systematic map of literature on land use conflicts: Dataset

description: This dataset compiles the international, peer-reviewed literature on land use conflicts that was published between 2005 and 2020. It lists 306 publications and provides for each of them information regarding the research methods, research aims, covered land use types, covered geographical region, subject area, definition of "land use conflict", and conceptual approach. It can be used to identify publications on specified topics or combinations of topics, such as literature on land use conflicts in Africa regarding the land use type pastoralism. The ROSES for systematic map reports file provides information of how the systematic map was compiled and the list of unobtainable and excluded publications lists those publications that appeared in the initial database search but were not included in the mapping, with reasons for exclusion. More information on the dataset's creation, a detailed analysis, and interpretation are provided in the corresponding journal article: Fienitz, Meike. 2023. "Taking stock of land use conflict research: A systematic map with special focus on conceptual approaches." <em>Society & Natural Resources</em>. http://dx.doi.org/10.1080/08941920.2023.2199380
description: This work was supported by the German Federal Ministry of Education and Research under Grant 033L205A.
description: {"references": ["Haddaway NR, Macura B, Whaley P, and Pullin AS. 2017. ROSES for Systematic Map Reports. Version 1.0. DOI: 10.6084/m9.figshare.5897299"]}
DOI: 10.5281/zenodo.9223
title: A Set Of 72 Kinase Inhibitors

description: A set of 72 known kinase inhibitors was assembled from ChEMBL release 18. For each inhibitor, MACCS and ECFP4 representations are provided. Both fingerprints were calculated using an in-house implementation based upon OpenEye's OEChem toolkit. For MACCS, we used SMARTS patterns adapted from RDKit.
DOI: 10.7303/syn51109429.1
title: Stop the Bleed quiz dataset
DOI: 10.7303/syn51109431
title: SURVEY INSTRUMENT for Knowledge of Stop The Bleed techniques- A National Survey.docx
DOI: 10.7927/h4rf5s0p
title: Global Population Projection Grids Based on Shared Socioeconomic Pathways (SSPs), 2010-2100
title: Global Population Projection Grids Based on SSPs, v1 (2010-2100)

description: The Global Population Projection Grids Based on Shared Socioeconomic Pathways (SSPs), 2010-2100 consists of global spatial population projections at a resolution of one-eighth degree (7.5 arc-minutes) for urban, rural, and total population, consistent both quantitatively and qualitatively, with the SSPs at ten-year intervals for 2010-2100. Spatial demographic projections are key inputs for the analysis of land use, energy use, and emissions, as well as for the assessment of climate change vulnerability, impacts, and adaptation. The SSPs are developed to support future climate and global change research and the Intergovernmental Panel on Climate Change (IPCC) Sixth Assessment Report (AR6). This data set is produced based on a clear need for plausible alternative projections of spatial distribution of the population that can represent patterns of development consistent with the SSPs.
DOI: 10.13020/3xfe-2m18
title: US Forest Service Planning, Appeals, and Litigation Data on NEPA compliance, 2005-2021

description: This dataset records metadata on every decision made by the US Forest Service under the National Environmental Policy Act between 2005 and 2021. The data is derived from metadata recorded in the US Forest Service's Planning, Appeals, and Litigation System Database, which is not easily accessible to the public. See the Readme for more information.
DOI: 10.25423/cmcc/medsea_analysisforecast_bgc_006_014_medbfm3
title: Mediterranean Sea Biogeochemical Analysis and Forecast (CMEMS MED-Biogeochemistry, MedBFM3 system)
title: MEDSEA_ANALYSISFORECAST_BGC_006_014_MedBFM3

description: The biogeochemical analysis and forecasts for the Mediterranean Sea at 1/24 degree are produced by means of the MedBFM model system (i.e. the physical-biogeochemical OGSTM-BFM model coupled with the 3DVarBio assimilation scheme). MedBFM is offline coupled with the CMEMS Med-physics system. MedBFM, which is run by OGS, produces ten days of forecast every day and the analysis of the previous seven days once a week (on Tuesday) with the assimilation of surface chlorophyll (i.e., CMEMS-OCTAC satellite data) and insitu profiles of chlorophyll and nitrate (i.e., BGC-Argo float data).
DOI: 10.5281/zenodo.7799302
title: Dataset for ACP by Hong et al., 2023

description: The details are also available upon request from the corresponding author (ywhong@iue.ac.cn).
DOI: 10.6084/m9.figshare.23183402
title: Supplementary Material for: Clinicopathologic and prognostic study of hydroa vacciniforme-like lymphoproliferative diseases: A systematic review

description: Background: Limited clinicoprognostic data are available on hydroa vacciniforme (HV)-like lymphoproliferative diseases (HVLPD). Methods: This systematic review searched HVLPD reports in Medline via PubMed, Embase, Cochrane, and CINAHL databases in October 2020. Results: A total of 393 patients (65 classic HV, 328 severe HV/HV-like T-cell lymphoma [HVLL]) were analyzed. Among severe HV/HVLL cases, 56.0% were Asians, whereas 3.1% were Caucasians. Facial edema, hypersensitivity to mosquito bites, the onset of skin lesion and percentage of severe HV/HVLL differed significantly by race. Progression to systemic lymphoma was confirmed in 9.4% of HVLPD patients. Death occurred in 39.7% patients with severe HV/HVLL. Facial edema was the only risk factor associated with progression and overall survival. Mortality risk was higher in Latin Americans than in Asians and Caucasians. CD4/CD8 double-negativity was significantly associated with the worst prognosis and increased mortality. Conclusion: HVLPD is a heterogeneous entity with variable clinicopathologic features associated with genetic predispositions.
DOI: 10.6084/m9.figshare.23501784
title: Supplementary Material for: Rectal Melanoma: Rare Cancer with Grave Prognosis

description: Malignant melanoma of the rectum is an exceedingly rare type of cancer with an aggressive presentation, comprising up to 4% of all anorectal cancers. Presentation of this cancer tends to occur in individuals in their late 80s, with nonspecific symptoms such as anal pain or rectal bleeding. Diagnosing rectal melanoma, especially in early stages, is difficult due to its amelanotic presentation and lack of pigmentation, which results in poor remission rates and prognosis. Furthermore, surgical treatment is difficult as these types of malignant melanomas tend to spread along submucosal planes; thus, complete resections are impractical, especially if caught later. In this case report, we present the radiological and pathological features as seen in a 76-year-old man diagnosed with rectal melanoma. Based on his presentation of a heterogeneous bulky anorectal mass with extensive local invasion, initial impressions were colorectal carcinoma. However, surgical pathology found the mass to be a c-KIT+ melanoma, with positive SOX10, Melan-A, HMB-45, and CD117 biomarkers. While the patient was treated with imatinib, the melanoma was too widespread and aggressive, leading to progression and ultimately death.
DOI: 10.6084/m9.figshare.23573874
title: Supplementary Material for: Comparison of urinary protein/creatinine ratio as an alternative to 24-hour proteinuria in Lupus Nephritis: TUNARI study

description: Abstract Background: Lupus nephritis (LN) occurs in approximately 50% of people with Systemic Lupus Erythematosus (SLE). The 24-hour proteinuria (gold standard) is measured among other tests for the control and monitoring of LN activity. This study investigates the use of the protein/creatinine ratio (PCR) as an alternative for the detection of proteinuria and its accuracy compared to the gold standard in a predominantly non-white population. Methods: This was a prospective study conducted in Salvador, Brazil, between December 2021 and May 2022. We invited adult patients diagnosed with SLE and LN, regardless of their disease activity. The estimation of the PCR and 24-hour proteinuria was performed using conventional methods. The analysis used was the correlation test (rs), coefficient of determination (r2) and concordance by the Bland-Altman method. A specific sensitivity was measured by the ROC curve with its respective cut-off by the Youden Index. Results: We compared 112 samples of 75 patients with LN, with a mean age of 34.5 ± 11.8 years. Of these patients, 85% were women, 87.9% were non-white. A high degree of correlation was observed between PCR with 24-hour proteinuria (rs = 0.77 and r² = 0.59). The ROC analysis shows an area under the curve (AUC) of 0.92 and the cut-off point calculated by the Youden Index was 0.78 with a sensitivity of 90.0% and specificity of 82%. However, the Bland-Altman graph indicated decreasing concordance as the degree of proteinuria increased, despite showing concordance at high levels of proteinuria. Conclusion: The PCR shows high sensitivity to follow-up patients with LN when compared with 24-hour proteinuria. Our findings suggest that PCR is a useful parameter for the evaluating and monitoring patients in complete remission. However, in cases of partial remission, the utility of PCR is limited.
DOI: 10.6084/m9.figshare.23899608
title: Supplementary Material for: Possible Influence of Ethnicity on CT Perfusion Parameter Thresholds in Acute Ischemic Stroke

description: Introduction Tissue at risk, as estimated by CT perfusion utilizing Tmax+6, correlates with final infarct volume (FIV) in acute ischemic stroke (AIS) without reperfusion. Tmax thresholds are derived from Western ethnic populations but not from ethnic Asian populations. We aimed to investigate the influence of ethnicity on Tmax thresholds. Methods From a clinical-imaging registry of Australian and Indonesian stroke patients, we selected a participant subgroup with the following inclusion criteria: AIS under 24 hours and absence of reperfusion therapy. Clinical data included demographics, time metrics, stroke severity, premorbid, and 3-month Modified Rankin Score. Baseline CTP and MRI &lt;72 hours were performed. Volumes of Tmax utilizing different thresholds and final infarct volumes (FIV) were calculated. Spearman correlation was used to evaluate relationship involving ordinal variables and calculate the optimal Tmax threshold against FIV in both populations. Results Two hundred patients were included in the study sample 100 in Jakarta and 100 in Geelong. The median National Institutes Health Stroke Scale (IQR) were 6(3-11) and 3(1-5), respectively. The median Tmax+6(IQR) was 0 (0-46.5) in Jakarta group and 0(0-7.5) in Geelong group. The median FIV(IQR) was 0 (0-30.5) and 0 (0-5.5). Tmax +8s in Jakarta population against FIV showed Spearman’s coefficient =0.72, representing the optimal Tmax threshold. Tmax+6s showed Spearman’s coefficient =0.51 against FIV in the Geelong population. Conclusions Tmax thresholds approximating FIV were possibly different in the Asian when compared with the non-Asian populations. Future studies are required to extend and confirm the validity of our findings.
DOI: 10.6084/m9.figshare.23950824
title: Supplementary Material for: Krukenberg tumor of gastric origin in pregnant women with preeclampsia

description: Krukenberg tumor refers to a malignancy in the ovary that metastasizes from a primary site, classically the gastrointestinal tract. Pregnancy complicated with a Krukenberg tumor is very rare. In this report, we present two unusual cases of pregnant women with Krukenberg tumors of gastric origin. One case was a full-term pregnant woman with preeclampsia (PE) who underwent a caesarean section when bilateral enlarged ovaries were incidentally identified. Histopathology of the wedge resection biopsy showed single-ring cell carcinoma; this was followed by gastroscopy, which indicated a gastric origin. The woman received chemotherapy but died six months later. Another case was a pregnant woman at 30 gestational weeks with abdominal pain complicated with early-onset PE. Ultrasonography and magnetic resonance imaging showed bilateral enlarged ovaries and elevated tumor markers. Gastroscopy indicated linitis plastica. After an emergency caesarean section, adnexectomy was performed, and postoperative histopathology confirmed a Krukenberg tumor. The woman died two months after delivery. Gastrointestinal symptoms during pregnancy may indicate a malignancy of rare gastrointestinal origin. PE complicated with Krukenberg tumors in pregnancy should be considered in future studies.
DOI: 10.6084/m9.figshare.23988510
title: Supplementary Material for: Prognostic Potential of the Prognostic Nutritional Index in Non-Small Cell Lung Cancer Patients Receiving Pembrolizumab Combination Therapy with Carboplatin and Paclitaxel/Nab-Paclitaxel

description: Introduction: Pembrolizumab (Pemb) therapy in conjunction with carboplatin and paclitaxel (PTX)/nab-PTX has been efficacious in treating non-small-cell lung cancer (NSCLC). However, the response predictors of this combination therapy (Pemb-combination) remain undetermined. We aimed to evaluate whether Glasgow prognostic score (GPS), neutrophil-to-lymphocyte ratio (NLR), body mass index (BMI), platelet-to-lymphocyte ratio (PLR), and prognostic nutritional index (PNI) are potential factors in prognosticating the response to Pemb-combination therapy in advanced NSCLC patients. Methods: We retrospectively recruited 144 NSCLC patients receiving first-line treatment with Pemb-combination therapy from 13 institutions between December 1, 2018, and December 31, 2020. GPS, NLR, BMI, PLR, and PNI were assessed for their efficacy as prognostic indicators. Cox proportional hazard models and the Kaplan–Meier method were used to compare the progression-free survival (PFS) and overall survival (OS) of the patients. Results: The treatment exhibited a response rate of 63.1% (95% confidence interval [CI]: 55.0–70.6%). Following Pemb-combination administration, the median PFS and OS were 7.3 (95% CI: 5.3–9.4) and 16.5 (95% CI: 13.9–22.1) months, respectively. Contrary to PNI, NLR, GPS, BMI, and PLR did not display substantially different PFS in univariate analysis. However, multivariate analysis did not identify PNI as an independent prognostic factor for PFS. Furthermore, univariate analysis revealed that GPS, BMI, and PLR exhibited similar values for OS but not NLR and PNI. Patients with PNI ≥45 were predicted to have better OS than those with PNI &lt;45 (OS: 23.4 and 13.9 months, respectively, p=0.0028). Multivariate analysis did not establish NLR as an independent prognostic factor for OS. Discussion/Conclusion: The PNI evidently predicted OS in NSCLC patients treated with Pemb-combination as first-line therapy, thereby validating its efficiency as a prognostic indicator of NSCLC.
DOI: 10.6084/m9.figshare.24042576
title: Supplementary Material for: Airway microbiome composition and co-occurrence network are associated with inflammatory phenotypes of asthma

description: Introduction The composition and co-occurrence network of the airway microbiome might influence the asthma inflammatory phenotype. Airway microbiota change with asthma phenotypes, and the structure of the bacterial community in the airway might differ between different asthma inflammatory phenotypes and may also influence therapy results. Identifying airway microbiota can help investigate the role that microbiota plays in the asthma inflammatory process. Methods Induced sputum from 55 subjects and 12 healthy subjects from Beijing, China, was collected and analyzed for the bacterial microbiota. Microbiome diversity, composition, co-occurrence networks, and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways were predicted and compared between the study groups. Results Significant differences in the sputum microbiome composition, co-occurrence network, and predicted functional pathways were observed between the two inflammatory phenotypes. Asthmatics in the low FeNO group exhibited lower α-diversity in the sputum microbiota and had higher abundance of the phylum Proteobacteria compared with that of the high FeNO group. Compared with the low FeNO group, the network in the high FeNO group was more “closed” and “connected”, and an alteration in the abundance of keystone species T. socranskii was found. Significantly different predicted metabolic subfunctions including nucleotide metabolism, lipid metabolism, energy metabolism, replication and repair, drug resistance antimicrobial and carbohydrate metabolism between the two studied phenotypes were also observed. Conclusion Our findings confirm that the airway microbiota is associated with the asthma inflammation process. The differences in the airway microbiome composition and co-occurrence network may affect distinct asthma inflammatory phenotypes. Our findings suggest the possibility that more targeted therapies could be applied based on the airway bacterial genera.
DOI: 10.6084/m9.figshare.24047229
title: Supplementary Material for: Cx43 facilitates mesenchymal transition of endothelial cells induced by shear stress

description: Objectives: This study aimed to determine the function of Cx43 in the endothelial-to-mesenchymal transition (EndMT) process of endothelial cells (ECs) and to explore the potential signaling pathways underlying these functions. Methods: Endothelial cells (ECs) were extracted from rat aorta. ECs was transfected with Cx43 cDNA, Cx43 siRNA and then exposed to 5 or 12 dyne/cm2. Immunofluorescence staining was used to detect the expression of SM22α in ECs, Cx43 and acetylated-α tubulin in ECs. Western Blotting was used to detected the protein expression of α-SMA, CD31, Cx43, H1-caponin, Ift88 and p-smad3 in ECs. Results: The expression of αSMA, SM22α and Cx43 was significantly increased and CD31 was markedly decreased in ECs treated with laminar shear stress at 5 dyn/cm2. The Cx43 cDNA transfection could induce the expression of SM22α or H1-caponin, and attenuate CD31 expression in the ECs. Also, Cx43 overexpression harms cilia formation in ECs exposed to 5dyn/cm2, accompanied with the regulated Ift88 and smad signaling. Conclusions: This study found that laminar shear stress at 5 dyn/cm2 would increase the expression of Cx43, and interfere with primary cilia formation by inhibiting the expression of Ift88 in ECs.
DOI: 10.5281/zenodo.8101826
title: Supporting data for "Detection of single ions in a nanoparticle coupled to a fiber cavity"

description: Data for Fig. 2b, 2d, 3 and 4 of the paper "Detection of single ions in a nanoparticle coupled to a fiber cavity"
DOI: 10.25582/data.2020-04.1974034/2071486
title: Data for EMSL Project 51127 from April 2020
DOI: 10.25582/data.2020-03.1968434/2071487
title: Data for EMSL Project 51127 from March 2020
DOI: 10.21227/yvk7-qk38
title: FooDD: Food Detection Dataset for Calorie Measurement Using Food Images

description: Images of various foods, taken in different conditions, as described below. Images can be used and to design and test Computer Vision techniques that can recognize foods and estimate their calories and nutrition.
DOI: 10.25582/data.2020-03.1965421/2071488
title: Data for EMSL Project 51127 from March 2020
DOI: 10.6073/pasta/9755e7d161fa2684d1575f07ecf5fd79
title: Time series of in situ Uv-Vis absorbance spectra and high-frequency predictions of total and soluble Fe and Mn concentrations measured at multiple depths in Falling Creek Reservoir (Vinton, VA, USA) in 2020 and 2021

description: High-frequency measurements of light absorbance were collected at multiple depths in Falling Creek Reservoir (FCR; Vinton, VA, USA) using a s::can Spectrolyser UV-Visible spectrophotometer coupled with a multiplexor pumping system. The system pumps water samples from individual depths into a flow-through cuvette where the UV-vis absorbance spectra of the sample are measured by the spectrophotometer. The system used in our study collected measurements of light absorbance every 2.5 nm wavelengths from 200 nm to 732.5 nm (optical path length of 10 mm) approximately at an hourly time step for seven monitoring depths in the reservoir. Data was collected during two periods; the first deployment (16 October to 9 November 2020) was to observe changes in Fe and Mn concentrations before, during, and after reservoir fall turnover and the second deployment (26 May to 21 June 2021) was to observe the effects of engineered hypolimnetic oxygenation on Fe and Mn concentrations. Partial least squares regression models were developed to generate predictions of total and soluble Fe and Mn concentrations based on the correlation between absorbance spectra and sampling data.
DOI: 10.6084/m9.figshare.22141394
title: Supplementary Material for: Leukocytoclastic vasculitis associated with adalimumab therapy for Crohn’s disease

description: Leukocytoclastic vasculitis (LCV) is rarely associated with anti-TNF α therapy. We report a 22-year-old man with new onset of a pustular rash on his bilateral upper and lower extremities while on adalimumab therapy for Crohn’s disease. Skin biopsy of the affected area showed perivascular extravasation of erythrocytes, neutrophils, eosinophils, and vascular damage surrounding blood vessels associated with fibrin, consistent with LCV. Patient was treated with topical steroids and subsequently transitioned to ustekinumab therapy with follow-up colonoscopy showing minimal active disease. Our report highlights the association of a unique dermatologic autoimmune manifestations with TNF-targeted therapy in a patient with Crohn’s disease.