cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/77pgthjfs3
title: Raw data-Development of a protein scaffold for arginine sensing generated through the dissection of the arginine-binding protein from thermotoga maritima

description: research data of the work
DOI: 10.17632/82c548svpy
title: Field evaluation of the effect of Aspergillus niger on lettuce growth using conventional measurements and a high-throughput phenotyping method based on aerial images

description: Raw data associated with the paper Field evaluation of the effect of Aspergillus niger on lettuce growth using conventional measurements and a high-throughput phenotyping method based on aerial images (10.1371/journal.pone.0274731). Data include vegetative growth parameters measured in lettuce plants and the orthoimage obtained from aerial photos used to generate vegetation indices.
DOI: 10.17632/f8mj5ftjr4
title: Proteome of human macrophages exposed to ionizing radiation - part 1

description: Human monocyte-derived macrophages were exposed to 2 Gy/ fraction/ day for 5 days. A shotgun proteomics approach, combined with 8-plex iTRAQ tags, was employed.
DOI: 10.17632/ff2nhrw8g2
title: Spontaneous Rupture of Renal Cell Carcinoma in Pregnancy: A Case Report 

description: Renal cell carcinoma is the most common type of malignancy in pregnancy. Rupture of renal cell carci-noma is not uncommon. The diagnosis of renal cell carcinoma is often delayed as the clinical presenta-tion might resemble other pregnancy-related disorders or asymptomatic in most cases and a complete ultrasonographic examination of the abdomen is not a part of the routine obstetric evaluation. We report a rare case with spontaneous rupture of renal cell carcinoma in 20 years old in full-term pregnancy prim-igravida presented by hypertensive disorder and severe abdominal pain with massive retro peritoneum collection, radical nephrectomy was done and the patient life was saved.
DOI: 10.17632/h8crhcysvf
title: test

description: Gujarati is the formalized communication language in the state of Gujarat and united territory of Dadra and Nagar Haveli and Div and Daman in India predominantly spoken by the Gujarati. Gujarati language contained a wealthy set of characters that includes vowels, consonants, digits, various signs. This dataset contains 75,000 grayscale isolated handwritten character images with the size of 28 X 28 pixels. This dataset contains sample images for 34 consonants, 12 vowels, 12 vowel signs and 5 various signs. This dataset could be used for the Gujarati Handwritten Character recognition in the field of Natural Language Processing (NLP) and Deep Learning .
DOI: 10.17632/jnfsk4xbvr
title: Biogenic-SOA-Data-Chichijima-Island-2010-2012

description: Biogenic-SOA-Data-Chichijima-Island-2010-2012
DOI: 10.17632/ncbph43m85
title: Macrophage Innate Training Induced by IL-4 and IL-13 Activation Enhances OXPHOS Driven Anti-Mycobacterial Responses

description: This is the dataset pertaining to the article "Macrophage Innate Training Induced by IL-4 and IL-13 Activation Enhances OXPHOS Driven Anti-Mycobacterial Responses". To interpret and follow the data, please refer to the linked article, as each excel sheet corresponds with each named graph/figure.
Abstract: Macrophages are a highly adaptive population of innate immune cells. Polarization with IFNγ and LPS into the “classically activated” M1 macrophage enhances pro-inflammatory and microbicidal responses, important for eradicating bacteria such as Mycobacterium tuberculosis. By contrast, “alternatively activated” M2 macrophages, polarized with IL-4, oppose bactericidal mechanisms and allow mycobacterial growth. These activation states are accompanied by distinct metabolic profiles, where M1 macrophages favor near exclusive use of glycolysis, whereas M2 macrophages up-regulate oxidative phosphorylation (OXPHOS). Here we demonstrate that activation with IL-4 and IL-13 counterintuitively induces protective innate memory against mycobacterial challenge. In human and murine models, prior activation with IL-4/13 enhances pro-inflammatory cytokine secretion in response to a secondary stimulation with mycobacterial ligands. In our murine model, enhanced killing capacity is also demonstrated. Despite this switch in phenotype, IL-4/13 trained murine macrophages do not demonstrate M1-typical metabolism, instead retaining heightened use of OXPHOS. Moreover, inhibition of OXPHOS with oligomycin, 2-deoxy glucose or BPTES all impeded heightened pro-inflammatory cytokine responses from IL-4/13 trained macrophages. Lastly, this work identifies that IL-10 attenuates protective IL-4/13 training, impeding pro-inflammatory and bactericidal mechanisms.
In summary, this work provides new and unexpected insight into alternative macrophage activation states in the context of mycobacterial infection.
DOI: 10.17632/w386ycgpf3
title: OPN3 is a new biomarker that regulates melanogenesis through MITF in nevus cells

description: Background: Melanocytic nevus (MN) is a commonly encountered malformation or neoplasm. The mechanism of melanocytic nevus melanogenesis is not fully understood. Objective: We investigated the function and underlying mechanism of melanogenesis regulated via OPN3 in human skin melanocytic nevus. Methods: The expression of OPN3 in nevus tissues, paired adjacent normal skin tissues, healthy individuals, and the contents of melanin in the nevus tissues were analyzed. Primary nevus cells were isolated in vitro and a reconstructed nevus model was to explore the role of OPN3 in the melanogenesis in nevus cells by siRNA-OPN3. Results: The expression of OPN3 in nevus, cultured nevus cells and reconstructed nevus model in vivo and vitro was observed. OPN3 regulates melanogenesis through OPN3-JNK-MITF signaling pathway in nevus cells. After inhibition of OPN3, the phosphorylation of MITF was increased and transferred to the nucleus. The regulation of OPN3 on the melanogenesis has also been confirmed by the reconstructed nevus model in vitro. Conclusions: Our research provides insights into the molecular mechanism of melanogenesis in human skin melanocytic nevus, and it is possible that OPN3 can be used as a biomarker for melanocytic nevus.
DOI: 10.17632/y8drryy2yc
title: Characterizing the photochemical sensitivity to emissions and local meteorology of 2 South American megacities : Bogotá, Santiago and the effect of local lockdowns

description: This dataset contains urban vehicle exhaust emission of NO2 and MP2.5 from on-road transportation in Santiago, Chile, for the period March-June 2020; and PM10 exhaust emissions at Bogota, Colombia, for March-April 2020. The data is presented as NetCDF4 files, in Gg/y per cell for each specie and at different hours, gridded with a spatial resolution of 0.01° x 0.01°. Santiago includes three periods: 7, 12 and 19 hours, and Bogota comprises the periods: 5, 12 and 21 hours.
DOI: 10.17632/yrdmz6sjcd
title: Data for: A new insight into pore body filling mechanism during waterflooding in a glass micro-model

description: A new insight into pore body filling mechanism during waterflooding in a glass micro-model
DOI: 10.17632/5s94hzt5cx
title: INMET data - "Intensification of heatwaves by soil moisture–atmosphere coupling in Southeast Brazil"

description: Time series of Daily Maximum Temperature values from two meteorological stations from INMET (Brazilian National Institute of Meteorology) located in São Paulo and Curitiba.
DOI: 10.17632/7wxrk2f7tb
title: LINF_250009400

description: Axoneme capping structure 2 | ACS2
Leishmania infantum (strain JPCM5)
DOI: 10.17632/87gtjjh5gb
title: Geochronology of the Faroe Islands: A case study on 40Ar/39Ar dating of local basaltic sills and selected lavas

description: The analytical data presented in this ‘Supplement A' are linked to the geochronological study: “On the timing and nature of magmatism in the North Atlantic Igneous Province: New implications from basaltic rocks of the Faroe Islands” by Jógvan Hansen and Morgan Ganerød, 2023.
In the actual work new absolute/radiometric ages for onshore sill intrusions and selected lava flows cropping out in the Faroe Islands, by means of the K-Ar based 40Ar/39Ar incremental heating method, have been determined. As the actual sills quite likely represent the final stages of the waning magmatism in the Faroe Iceland Basalt Group (FIBG) following the large magma outpourings associated with the onset of seafloor-spreading within this part of the NE Atlantic area at ~55.5 to ~56 Ma.
Percentages of radiogenic 40Ar and K/Ca ratios have been contrasted against cumulative % 39Ar release for the various incremental heating steps, associated with analyses of Faroese basaltic rock samples used in the actual research project (10 specimens altogether), are presented as diagrams in this supplement  (Fig. A). Isochrons representing the various analyse steps during the incremental heating analyses are illustrated as 39Ar/40Ar ratios versus 36Ar/40Ar ratios plots in this Supplement (Fig. B).
DOI: 10.17632/9y6p7shshy
title: In vitro and in vivo functions of SARS-CoV-2 infection-enhancing and neutralizing antibodies. Li et al

description: Supplemental Items
DOI: 10.17632/by6rthpwb8
title: MUSOIC study

description: Analytic code and data used in the Multicentre, prospective cohort Study of Oesophageal Injuries and related Clinical outcomes (MUSOIC study)
DOI: 10.17632/d6wk8nhpkm
title: Supplemental Table: Websites encountered in all 1700 Google image search results. 

description: Supplemental Table
DOI: 10.17632/mm9m5wtzfv
title: AUGMENTED REALTY AND ADVERTISING: A QUALITATIVE STUDY

description: Almost all of us are aware of the mobile game Pokémon Go. This has happened because of the new buzzword in the advertising and marketing industry named Augmented Reality. In the recent past, digital advertising has evolved so much that it has become a necessity for all kinds of businesses. We can sense it by observing its rapid growth throughout all social media and search engines. Today we are observing another technological shift, spatial computing which is dragging consumers to interact with the brands even more.
The main purpose of this paper is to create awareness about Augmented Reality and the possibility of AR in the Advertising Industry. Another objective of this study is to examine how strongly it enhances the primary model of Advertising, AIDA. Through this paper, we will investigate how consumers’ interactions with the brands are changing and how directly or indirectly it’s pushing sales and brand recall factor. In short, the primary intention of this paper is to shed light upon how this new technological invention is changing the advertising landscape throughout the world.
DOI: 10.17632/r88fb642fp
title: Gravity Modelling by Using N-Sided Polyhedrons

description: This repository contains scripts and artificial gravity datasets used and explained in paper "Gravity Modelling of Sedimentary Basins by Using N-Sided Vertical Polyhedrons" by Nedim Gökhan AYDIN and Turgay İŞSEVEN. The scripts and the data are explained below.

-intlog5a.m is the MATLAB adaptation of the FORTRAN scripts given by Smith (2000).
-gprism.m calculates the gravity contribution of a polyhedron in space.
-VoronoiIterations.m applies modelling process for given gravity anomalies, data points and parameters.
-The two artificial gravity data (faulty_grav.mat and basin_grav.mat) are 500x500 matrixes for two different underground structures.

*The scripts require VoronoiLimit.m function from MATLAB File Exchange to compute Voronoi diagrams for limited area (Sievers, 2023).
DOI: 10.17632/svwg44vv5w
title: MIMO Array Data- Final

description: The uploaded data of printed antenna with AMC surface for vehicular MIMO systems are deposited.
DOI: 10.17632/34rt88dv8b
title: Sulfur isotope of sandstone and chemical components (%) of uranium minerals in the studied area.

description: Sulfur isotope of sandstone (Table S4) and chemical components (%) of uranium minerals (Table S6) in the studied area.
DOI: 10.17632/39fwpzmh9p
title: A pictorial guide to the epibenthic megafauna of Orphan Knoll (northwest Atlantic) identified from in situ benthic video footage

description: In 2010, Fisheries and Oceans Canada led a multidisciplinary oceanographic research mission onboard the Canadian Coast Guard Ship Hudson to the Northwest Atlantic Fisheries Organization Regulatory Area to collect benthic imagery and geological data in support of the identification of vulnerable marine ecosystems. Using the remotely operated vehicle ROPOS, six benthic video transects were collected on Orphan Knoll, a submerged circular continental fragment located 550 km northeast of St. John’s, Newfoundland. High-resolution video footage, digital still images, and specimen samples were collected between 1655 and 3004 m depth across the flanks and plateau of the knoll and Orphan Seamount. In 2007, the Northwest Atlantic Fisheries Organization implemented a ~15,800 km2 closure over Orphan Knoll to restrict the use of bottom tending fishing gear in accordance with United Nations General Assembly Resolution 61/105. However, at the time, its benthic communities and the presence of vulnerable marine ecosystems had not been fully assessed. Wudrick et al. (2020) published a pictorial guide to the epibenthic megafauna enumerated and taxonomically identified from five ROPOS transects collected on Orphan Knoll and Orphan Seamount. Here we provide downloadable images for each taxon identified, and the location files for each transect analyzed (in ARCGIS format). WUDRICK, A., L. BEAZLEY, T. CULWICK, C. GOODWIN, P. CARDENAS, J. XAVIER, & E. KENCHINGTON, 2020. A Pictorial Guide to the Epibenthic Megafauna of Orphan Knoll (northwest Atlantic) Identified from In Situ Benthic Video Footage. Canadian Technical Report of Fisheries and Aquatic Sciences 3375: v + 154 p.
DOI: 10.17632/4v7zxnc8j3
title: Simulating low-energy neutrino interactions with MARLEY

description: Monte Carlo event generators are a critical tool for the interpretation of data obtained by neutrino experiments. Several modern event generators are available which are well-suited to the GeV energy scale used in studies of accelerator neutrinos. However, theoretical modeling differences make their immediate application to lower energies difficult. In this paper, I present a new event generator, MARLEY, which is designed to better address the simulation needs of the low-energy (tens of MeV and below) neutrino community. The code is written in C++14 with an optional interface to the popular ROOT data analysis framework. The current release of MARLEY (version 1.2.0) emphasizes simulations of the reaction 40Ar(ν_e, e^-)40K^⁎ but is extensible to other channels with suitable user input. This paper provides detailed documentation of MARLEY's implementation and usage, including guidance on how generated events may be analyzed and how MARLEY may be interfaced with external codes such as Geant4. Further information about MARLEY is available on the official website at http://www.marleygen.org.
DOI: 10.17632/5dfj2hhnng
title: SARS-CoV-2 GISAID UK-US isolates (2020-09-07) genotyping VCF

description: VCF files containing filtered mutated sites in SARS-CoV-2 genomes obtained from GISAID EpiCoV and submitted from the UK and the US, separated by individual mutations. The columns correspond to viral genome accession ID, nucleotide position in the genome, mutation ID (left blank in all rows), reference nucleotide, identified mutation, quality, filter, and information columns (all left blank), format (GT in all rows), column corresponding to reference genome (all 0, referring to reference nucleotide column), and columns corresponding to isolate genomes, with each row identifying the nucleotide in the POS column, and whether it is non-mutant (0), or the mutant indicated in the identified mutation column (1). The files is tab delimited, with the UK file having 12696 rows including the names, and 18135 columns, and the US file having 15588 rows including the names, and 16277 columns. The file was generated to test the hypothesis whether the different SARS-CoV-2 genes or protein coding regions are positively or negatively selected differently between 14408C&gt;T / 23403A&gt;G double mutants and double wildtype isolates, using mutation rate models, and whether regional distributions affect the mutation rates. Our findings have shown that the RdRp coding region and the S gene show the highest amount of selection across viral generations, and that different countries can affect the synonymous and nonsynonymous mutation rates for individual genes.
DOI: 10.17632/63ff323wm4
title: Miller et al Cell Death & Differ 2023 (Fig 1-5)

description: Raw data files for Miller et al, 2023 publication figures 1-5 (partial files for fig 5).
DOI: 10.17632/7h5fkftzhv
title: LINF_340032500

description: CBS domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/8hkvyyxhwk
title: Downloadable Files: Tonal Optimization of Bells Utilizing Evolutionary Shape Optimization

description: Additional downloadable content for the publication: Tonal Optimization of Bells Utilizing Gradient Based Boundary Shape Optimization. Inclusions: Step file of manufactured bell model. Prototype audio recordings. Digital Sample Tones.
DOI: 10.17632/cnvmn4ghh8
title: Embodied cross-modal interactions

description: Details are in the readme.txt
DOI: 10.17632/cnwv9hdspd
title: A Geospatiotemporal and Causal Inference Epidemiological Exploration of Substance and Cannabinoid Exposure as Drivers of Rising US Pediatric Cancer Rates - Final Dataset

description: Background. Age-adjusted US total pediatric cancer incidence rates (TPCIR) rose 49% 1975-2015 for unknown reasons. Prenatal cannabis exposure has been linked with several pediatric cancers which together comprise the majority of pediatric cancer types. We investigated whether cannabis use was related spatiotemporally and causally to TPCIR. Methods. State-based age-adjusted TPCIR data was taken from the CDC Surveillance, Epidemiology and End Results cancer database 2003-2017. Drug exposure was taken from the nationally-representative National Survey of Drug Use and Health, response rate 74.1%. Drugs included were: tobacco, alcohol, cannabis, opioid analgesics and cocaine. This was supplemented by cannabinoid concentration data from the Drug Enforcement Agency and ethnicity and median household income data from US Census. Results. TPCIR rose while all drug use nationally fell, except for cannabis which rose. TPCIR in the highest cannabis use quintile was greater than in the lowest (β-estimate=1.31 (95%C.I. 0.82, 1.80), P=1.80x10-7) and the time:highest two quintiles interaction was significant (β-estimate=0.1395 (0.82, 1.80), P=1.00x10-14). In robust inverse probability weighted additive regression models cannabis was independently associated with TPCIR (β-estimate=9.55 (3.95, 15.15), P=0.0016). In interactive geospatiotemporal models including all drug, ethnic and income variables cannabis use was independently significant (β-estimate=45.67 (18.77, 72.56), P=0.0009). In geospatial models temporally lagged to 1,2,4 and 6 years interactive terms including cannabis were significant. Cannabis interactive terms at one and two degrees of spatial lagging were significant (from β-estimate=3954.04 (1565.01, 6343.09), P=0.0012). The interaction between the cannabinoids THC and cannabigerol was significant at zero, 2 and 6 years lag (from β-estimate=46.22 (30.06, 62.38), P=2.10x10-8). Cannabis legalization was associated with higher TPCIR (β-estimate=1.51 (0.68, 2.35), P=0.0004) and cannabis-liberal regimes were associated with higher time:TPCIR interaction (β-estimate=1.87x10-4, (2.9x10-5, 2.45x10-4), P=0.0208). 33/56 minimum e-Values were &gt;5 and 6 were infinite. Conclusion. Data confirm a close relationship across space and lagged time between cannabis and TPCIR which was robust to adjustment, supported by inverse probability weighting procedures and accompanied by high e-Values making confounding unlikely and establishing the causal relationship. Cannabis-liberal jurisdictions were associated with higher rates of TPCIR and a faster rate of TPCIR increase. Data inform the broader general consideration of cannabinoid-induced genotoxicity.
DOI: 10.17632/dtdt8jbzcw
title: Data for: Factors Impacting Mortality Following Isolated Abdominal Aortic Dissection Repair

description: Attached are the data-set and the data output files obtained from the data analysis in our study.
DOI: 10.17632/f8ybp3kpcc
title: LINF_050007900

description: phosphate carrier protein - mitochondrial | MCP8; Leishmania infantum
DOI: 10.17632/kpwpyvdkgm
title: TpPta

description: Data associated with research on TpPta, a phosphotransacetylase from Treponema pallidum
DOI: 10.17632/smywkw2h6c
title: Dados classificação Barragem Fundao

description: Base de dados utilizadas para realizar a classificação de cobertura e uso do solo na área afetada pelo rompimento da Barragem do Fundão/MG.
DOI: 10.17632/ssdftsv88y
title: Data Bili-Uere chimpanzee ground nesting

description: Datasheets on chimpanzee nests and human and animal signs. Data collected in Bili-Uere (northern DRC) by T. Hicks from 2004 to 2013. Also included are additional figures, photographs and field descriptions.
DOI: 10.17632/tp2rrdz8wp
title: PRIN ADAPT MICROBIOLOGY

description: Fastq files of fungal community present in harvested grapes and analysed by a culture-independent approach using next-generation sequencing (NGS). Grape berries of Aglianico and Cabernet Sauvignon were collected during the 2020 growing season at the full ripening stage in two sites Molise and Sicilia. In total, four experimental samples were considered: Aglianico Molise (AM), Aglianico Sicilia (AS), Cabernet Sauvignon Molise (CM), and Cabernet Sauvignon Sicilia (CS).
DOI: 10.17632/txmjcgjc9g
title: LINF_330010200

description: LeishIF4E-1 interacting protein | Leish4E-IP2
Leishmania infantum (strain JPCM5)
DOI: 10.17632/v7cz97s659
title: Dataset_BC_mtDNA-CN_RTL_Indonesia_2023

description: qPCR results for peripheral blood mtDNA-CN and RTL from a breast cancer case-control study in Indonesia
DOI: 10.17632/232c7nbgtx
title: Data of the presence of Escherichia coli, Staphylococcus aureus, and sea, stx1 and stx2 genes in ready-to-fry falafel

description: The raw result of falafel investigation, regarding the presence of Escherichia coli, Staphylococcus aureus, and sea, stx1 and stx2 genes
DOI: 10.17632/3fcg7rrgst
title: CNM Data

description: The research aims to identify the policies developed by the Brazilian municipalities in relation to the covid pandemic 19.
DOI: 10.17632/64ry38sfkw
title: Supplementary data for "Application of AI failure identification techniques in condition monitoring using wavelet analysis"

description: Source code for the paper "Application of AI failure identification techniques in condition monitoring using wavelet analysis"
DOI: 10.17632/96nzdf5s88
title: Supp Material Differential immunomodulatory Effect of PARP Inhibition in BRCA1 deficient and competent tumor cells

description: Supplementary Material to "Differential immunomodulatory Effect of PARP Inhibition in BRCA1 deficient and competent tumor cells"
DOI: 10.17632/chywxb7wb7
title: All life 2
DOI: 10.17632/gnj5s8hk4v
title: LINF_070005200

description: histone-lysine N-methyltransferase | DOT1A; Leishmania infantum
DOI: 10.17632/h3gtdx4mpz
title: SOM

description: GFDL SM2.1, Slabcntl (run1) slab ocean control experiment output for IPCC AR4 and US CCSP
DOI: 10.17632/h3rxvh8sxp
title: Assessing the quality of patient referrals from primary care physicians at SWRHA, Trinidad, 2019

description: To assess the adequacy and justification of referrals from primary care physicians (PCPs) to specialized care services in South Trinidad.
DOI: 10.17632/hcvpk89c93
title: LINF_240021800

description: Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (SDH1)
Leishmania infantum (strain JPCM5)