cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/y816q-41m50
title: Salmonella typhimurium

description: Session notes: Salmonella fliL minicells with T3SS Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-09-19</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: -1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-09-19-15_slicer4475.jpg: Flagella mba2012-09-19-15_slicer4476.jpg: Flagella
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-19-15/rawdata/</p>12sep19a_fliL_0023.st,  Tilt Series (Pixel Size 0.512 nm), 636.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-19-15/rawdata/12sep19a_fliL_0023.st"
        > <i class="download icon"></i> Download </a></p>

        12sep19a_fliL_0023.rec,  Reconstruction (Pixel Size 1.12 nm), 353.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-19-15/3dimage_23113/12sep19a_fliL_0023.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/sm7kf-c6231
title: Campylobacter jejuni

description: Session notes: Campy cjj0413 deletions Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-09-28</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: -1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-09-28-23_slicer5647.jpg: Chemoreceptor mba2012-09-28-23_slicer5650.jpg: Flagella motor
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-28-23/rawdata/</p>12sep28a_cjj0413_0036.st,  Tilt Series (Pixel Size 0.512 nm), 630.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-28-23/rawdata/12sep28a_cjj0413_0036.st"
        > <i class="download icon"></i> Download </a></p>

        12sep28a_cjj0413_0036.rec,  Reconstruction (Pixel Size 1.12 nm), 41.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-28-23/3dimage_23045/12sep28a_cjj0413_0036.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/znky7-g0a58
title: Project: storage_granules

description: Session notes:  Tilt series of intact R. eutropha cells from for 2.5hrs in minimal media. Tilt series notes: A couple of small granules in an intact bug. Tomogram notes: Large red blood cell-esque vesice insude cell. A few granules.
description: <strong>Tilt Series Date:</strong> 2009-03-27</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Cupriavidus necator</p>
<strong>Strain:</strong> H16</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-61.0°, 61.0°), step: 1°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
  mba2009-03-27-28_slicer6096.jpg: Unknown filament mba2009-03-27-28_slicer6097.jpg: Unknown
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2009-03-27-28/rawdata/</p>09mar27c_b819_1_013.st,  Tilt Series (Pixel Size 0.95 nm), 989.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2009-03-27-28/rawdata/09mar27c_b819_1_013.st"
        > <i class="download icon"></i> Download </a></p>

        09mar27c_b819_1_013.rec,  Reconstruction (Pixel Size 1.9 nm), 185.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2009-03-27-28/3dimage_8722/09mar27c_b819_1_013.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/xaz59-w0k31
title: Bacillus subtilis

description: Session notes: Bacillus subtilis PG&TA sacculi, 15 minute achromopeptidase digest Tilt series notes: Extensively digested cell wall in a hole. Tomogram notes: Heavily digested. Striations, indicating a disordered-layered model?
description: <strong>Tilt Series Date:</strong> 2010-09-25</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> subsp. subtilis str. 168</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 66.0°), step: 0.8°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-09-25-3/rawdata/</p>10sep25c_BS_PGTA_15min_010.st,  Tilt Series (Pixel Size 0.774 nm), 2.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-09-25-3/rawdata/10sep25c_BS_PGTA_15min_010.st"
        > <i class="download icon"></i> Download </a></p>

        10sep25c_BS_PGTA_15min_010.rec,  Reconstruction (Pixel Size 1.548 nm), 218.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-09-25-3/3dimage_21169/10sep25c_BS_PGTA_15min_010.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/5yv4f-pe269
title: Salmonella typhimurium

description: Session notes: Salmonella minicells for fliL flagella, and T3SS. Auto-reconstructed to pixel size 5.18, then binned 2x further, low-pass filtered 0.33, 0.025; gold beads detected 24pix, erased 34pix. Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-03-20</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-03-20-4_slicer5339.jpg: Flagella and flagella motor mba2012-03-20-4_slicer5345.jpg: Extraellular vesicle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-03-20-4/rawdata/</p>12mar20b_fliL_0007.st,  Tilt Series (Pixel Size 20.136 nm), 743.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-03-20-4/rawdata/12mar20b_fliL_0007.st"
        > <i class="download icon"></i> Download </a></p>

        12mar20b_fliL_0007.rec,  Reconstruction (Pixel Size 1.036 nm), 79.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-03-20-4/3dimage_22767/12mar20b_fliL_0007.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.wfbc2w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mixornis bornensis",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044133-250811113504898/datasets/export for details.
DOI: 10.22002/qfzaa-x5v91
title: Campylobacter jejuni

description: Session notes: Auto-reconstruct 0.28, 0.025, SIRT reconstruction, removed gold. Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-04-24</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-04-24-4_slicer6507.jpg: filament mba2012-04-24-4_slicer6509.jpg: peptidoglycan
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-24-4/rawdata/</p>12apr24a_flgP_0007.st,  Tilt Series (Pixel Size 0.774 nm), 743.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-24-4/rawdata/12apr24a_flgP_0007.st"
        > <i class="download icon"></i> Download </a></p>

        12apr24a_flgP_0007.rec,  Reconstruction (Pixel Size 1.56 nm), 50.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-24-4/3dimage_22959/12apr24a_flgP_0007.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/qd9za-xdf17
title: Salmonella typhimurium

description: Session notes: T3SS minicells Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-08-26</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: -1.5°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2011-08-26-14_slicer9577.jpg: Escherichia coli  .  extracellular vesicle mba2011-08-26-14_slicer9608.jpg: Salmonella .  vesicle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-08-26-14/rawdata/</p>11aug26a_fliL_0007.st,  Tilt Series (Pixel Size 0.512 nm), 726.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-08-26-14/rawdata/11aug26a_fliL_0007.st"
        > <i class="download icon"></i> Download </a></p>

        11aug26a_fliL_0007.rec,  Reconstruction (Pixel Size 1.024 nm), 412.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-08-26-14/3dimage_22077/11aug26a_fliL_0007.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/7h9rn-b9345
title: Salmonella typhimurium

description: Session notes: Salmonella fliL minicells with T3SS Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-09-19</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: -1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-09-19-10_slicer4114.jpg: Vesicles?
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-19-10/rawdata/</p>12sep19a_fliL_0018.st,  Tilt Series (Pixel Size 0.512 nm), 636.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-19-10/rawdata/12sep19a_fliL_0018.st"
        > <i class="download icon"></i> Download </a></p>

        12sep19a_fliL_0018.rec,  Reconstruction (Pixel Size 1.12 nm), 353.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-19-10/3dimage_23103/12sep19a_fliL_0018.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.mfpnn7
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantago major",
 "Country is Indonesia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 50 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044135-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q9kdy2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantago major",
 "Country is Guyana",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044134-250811113504898/datasets/export for details.
DOI: 10.22002/xqdzc-59x95
title: Campylobacter jejuni

description: Session notes: Campy cjj0413 deletions Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-09-28</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: -1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-09-28-8_slicer5745.jpg: Chemoreceptor
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-28-8/rawdata/</p>12sep28a_cjj0413_0011.st,  Tilt Series (Pixel Size 0.512 nm), 630.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-28-8/rawdata/12sep28a_cjj0413_0011.st"
        > <i class="download icon"></i> Download </a></p>

        12sep28a_cjj0413_0011.rec,  Reconstruction (Pixel Size 1.12 nm), 46.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-28-8/3dimage_23015/12sep28a_cjj0413_0011.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/tssp9-xe342
title: H. pylori

description: YWC265
description: <strong>Tilt Series Date:</strong> 2018-06-04</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Helicobacter pylori</p>
<strong>Strain:</strong> 26695</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2018-06-04-3/rawdata/</p>square1_targets1_tilt12.mrc,  Tilt Series (Pixel Size 0.4319 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2018-06-04-3/rawdata/square1_targets1_tilt12.mrc"
        > <i class="download icon"></i> Download </a></p>

        square1_targets1_tilt12_full.rec,  Reconstruction (Pixel Size 1.7276 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2018-06-04-3/3dimage_92685/square1_targets1_tilt12_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/yv0td-k6233
title: Rat INS-1E pancreatic beta cells

description: Raw data files of Rat INS-1E pancreatic beta cells
description: <strong>Tilt Series Date:</strong> 2019-10-22</p>
<strong>Data Taken By:</strong> Xianjun Zhang</p>
<strong>Species / Specimen:</strong> Rat INS-1E pancreatic beta cells</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 0.0 eV/Å²,  defocus: 0.0 μm,  magnification: 0x. </p>
<strong>Microscope:</strong> 0</p>
<strong>Acquisition Software:</strong> Undefined</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/xzj2019-10-22-6/rawdata/</p>tomo12.mrc,  Tilt Series (Pixel Size 0.0 nm), 2.6 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/xzj2019-10-22-6/rawdata/tomo12.mrc"
        > <i class="download icon"></i> Download </a></p>

        tomo12.rec,  Reconstruction (Pixel Size 0.0 nm), 825.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/xzj2019-10-22-6/3dimage_121577/tomo12.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/c120e-7ma19
title: Campylobacter jejuni

description: Session notes: Campy cjj0413 deletions Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-09-28</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: -1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-09-28-26_slicer5671.jpg: Chemoreceptors mba2012-09-28-26_slicer5674.jpg: Flagella motor
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-28-26/rawdata/</p>12sep28a_cjj0413_0042.st,  Tilt Series (Pixel Size 0.512 nm), 630.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-28-26/rawdata/12sep28a_cjj0413_0042.st"
        > <i class="download icon"></i> Download </a></p>

        12sep28a_cjj0413_0042.rec,  Reconstruction (Pixel Size 1.12 nm), 39.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-28-26/3dimage_23051/12sep28a_cjj0413_0042.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/073p9-3tb87
title: Campylobacter jejuni

description: Session notes: Titan Krios dataset Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-08-29</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-08-29-18_slicer4882.jpg: Flagellar motor .  Granule
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-08-29-18/3dimage_23185/</p>CJejuni_Tomo_32.rec,  Reconstruction (Pixel Size 0.5797 nm), 288.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-08-29-18/3dimage_23185/CJejuni_Tomo_32.rec"
        > <i class="download icon"></i> Download </a></p>

        CJejuni_Tomo_32.st,  Tilt Series (Pixel Size 0.512 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-08-29-18/rawdata/CJejuni_Tomo_32.st"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9e4c6-94h61
title: Salmonella typhimurium

description: Session notes: FliL deletion (plus T3SS) Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-11-23</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: -1.5°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2011-11-23-28_slicer7370.jpg: Secretion system
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-11-23-28/rawdata/</p>11nov23a_fliL_0018.st,  Tilt Series (Pixel Size 0.512 nm), 726.7 MB  
        
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        11nov23a_fliL_0018.rec,  Reconstruction (Pixel Size 1.036 nm), 412.9 MB  
        
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