cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.4cuwep
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Hilara implicata Collin, 1927",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 16 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085189-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.88gzg8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lemiox rimosus (Rafinesque, 1831))",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085191-240626123714530/datasets/export for details.
DOI: 10.15468/dl.umqtv4
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Diabrotica undecimpunctata Jacoby, 1879",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 196 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085190-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m9tq8n
title: Occurrence Download

description: A dataset containing 240 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Hilara clavipes (Harris, 1776)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 240 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085193-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j394z5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Caseolus galeatus (R.T.Lowe, 1862))",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085194-240626123714530/datasets/export for details.
DOI: 10.15468/dl.qa643r
title: Occurrence Download

description: A dataset containing 25774 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ligustrum lucidum W.T.Aiton"
 ]
}

 The dataset includes 25774 records from 530 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085192-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5gahm7
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Diabrotica undecimpunctata Jacoby, 1879",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 196 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085195-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vnnwkt
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Hilara submaura Collin, 1927",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 27 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085197-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9sb49n
title: Occurrence Download

description: A dataset containing 40883 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callistemon R.Br."
 ]
}

 The dataset includes 40883 records from 513 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085196-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24117920.v1
title: High-Resolution Lead–Lag Relations Between Barents Sea Temperatures, the AMOC and the AMO During 1971–2018

description: The direction of heat transport from the atmosphere to the Barents Sea, and between the Barents Sea and the North Atlantic is important for understanding the interplay between Greenland ice melting and anthropogenic forcing. Here, we show how heat has been transported between water bodies by using a high-resolution lead-lag technique that identifies leading relations between cyclic temperature series. The results demonstrate that near-surface ocean temperature (0–30 m) in the Barents Sea led the temperature changes in its intermediate waters (100–200 m) during the period 1971 to 2018 inferring that heat transport is from the atmosphere to the intermediate waters. The Barents Sea’s temperatures lagged the Atlantic meridional overturning circulation (AMOC) and the Atlantic multidecadal oscillation (AMO) from 1971 to 2000. The AMOC was leading the Barents Sea near-bottom temperatures in the West (the Bear Island Through) during 1980–2018 but was both leading and lagging in the Barents Sea Northeast.
DOI: 10.6084/m9.figshare.24117959
title: The influence of synorogenic extension on the crustal architecture of North Gondwana during the assembly of Pangaea (Ossa–Morena Zone, SW Iberia

description: S1: SHRIMP U–Pb zircon data_Ponte de Sor-Seda gneiss dome orthogneisses (CHA-2_Chancelaria; VAL-4_Valongo)
DOI: 10.6084/m9.figshare.24117959.v1
title: The influence of synorogenic extension on the crustal architecture of North Gondwana during the assembly of Pangaea (Ossa–Morena Zone, SW Iberia

description: S1: SHRIMP U–Pb zircon data_Ponte de Sor-Seda gneiss dome orthogneisses (CHA-2_Chancelaria; VAL-4_Valongo)
DOI: 10.6084/m9.figshare.24117962
title: The influence of synorogenic extension on the crustal architecture of North Gondwana during the assembly of Pangaea (Ossa–Morena Zone, SW Iberia

description: S2: location samples – thin-sections, field photos
DOI: 10.6084/m9.figshare.13107715
title: Additional file 3 of Genome-wide analysis and prediction of genes involved in the biosynthesis of polysaccharides and bioactive secondary metabolites in high-temperature-tolerant wild Flammulina filiformis

description: Additional file 3: Table S1. Tissue-specific expression transcript in four different tissues of F. filiformis. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.13107715.v1
title: Additional file 3 of Genome-wide analysis and prediction of genes involved in the biosynthesis of polysaccharides and bioactive secondary metabolites in high-temperature-tolerant wild Flammulina filiformis

description: Additional file 3: Table S1. Tissue-specific expression transcript in four different tissues of F. filiformis. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.13107721
title: Additional file 5 of Genome-wide analysis and prediction of genes involved in the biosynthesis of polysaccharides and bioactive secondary metabolites in high-temperature-tolerant wild Flammulina filiformis

description: Additional file 5: Table S2. The expression of genes involved in glycolysis and gluconeogenesis pathway in F. filiformis genome.
DOI: 10.6084/m9.figshare.13107721.v1
title: Additional file 5 of Genome-wide analysis and prediction of genes involved in the biosynthesis of polysaccharides and bioactive secondary metabolites in high-temperature-tolerant wild Flammulina filiformis

description: Additional file 5: Table S2. The expression of genes involved in glycolysis and gluconeogenesis pathway in F. filiformis genome.
DOI: 10.6084/m9.figshare.24117962.v1
title: The influence of synorogenic extension on the crustal architecture of North Gondwana during the assembly of Pangaea (Ossa–Morena Zone, SW Iberia

description: S2: location samples – thin-sections, field photos
DOI: 10.6084/m9.figshare.13107724
title: Additional file 6 of Genome-wide analysis and prediction of genes involved in the biosynthesis of polysaccharides and bioactive secondary metabolites in high-temperature-tolerant wild Flammulina filiformis

description: Additional file 6: Table S3. Predicted biosynthetic gene clusters involved in terpene, PKS, NRPS and siderophore in F. filiformis using antiSMASH tool.
DOI: 10.6084/m9.figshare.13107724.v1
title: Additional file 6 of Genome-wide analysis and prediction of genes involved in the biosynthesis of polysaccharides and bioactive secondary metabolites in high-temperature-tolerant wild Flammulina filiformis

description: Additional file 6: Table S3. Predicted biosynthetic gene clusters involved in terpene, PKS, NRPS and siderophore in F. filiformis using antiSMASH tool.
DOI: 10.6084/m9.figshare.13107727
title: Additional file 7 of Genome-wide analysis and prediction of genes involved in the biosynthesis of polysaccharides and bioactive secondary metabolites in high-temperature-tolerant wild Flammulina filiformis

description: Additional file 7: Table S4. A comparative analysis of distribution of putative genes and gene clusters (terpene and type I PKS) related to secondary metabolitic biosynthesis in different strains of the F. filiformis. A blast search was performed using the software blastall v2.2.26 and thethreshold parameter: identity &gt; 40% coverage &gt; 40%. “1”: implied the gene distribution in other strain and “0” means the gene probabaly is not distribution in other strain.
DOI: 10.6084/m9.figshare.13632220
title: Species of <i>Colletotrichum</i> on bamboos from China

description: Twenty-seven <i>Colletotrichum</i> isolates associated with asymptomatic tissues of bamboo (Bambusoideae, Gramineae) were isolated from Anhui, Beijing, and Guangxi in China. Based on multilocus (internal transcribed spacer [ITS], glyceraldehyde-3-phosphate dehydrogenase [<i>GAPDH</i>], chitin synthase [<i>CHS</i>], actin [<i>ACT</i>], beta-tubulin [<i>TUB2</i>]) phylogenetic analyses and morphological characteristics, three species were distinguished, including two novel species, <i>C. bambusicola</i> and <i>C. guangxiense</i>, and one known species, <i>C. metake</i>, which is a first report for China. These species have hitherto only been discovered on Bambusoideae, indicating that they probably have host preference.
DOI: 10.6084/m9.figshare.13632220.v1
title: Species of <i>Colletotrichum</i> on bamboos from China

description: Twenty-seven <i>Colletotrichum</i> isolates associated with asymptomatic tissues of bamboo (Bambusoideae, Gramineae) were isolated from Anhui, Beijing, and Guangxi in China. Based on multilocus (internal transcribed spacer [ITS], glyceraldehyde-3-phosphate dehydrogenase [<i>GAPDH</i>], chitin synthase [<i>CHS</i>], actin [<i>ACT</i>], beta-tubulin [<i>TUB2</i>]) phylogenetic analyses and morphological characteristics, three species were distinguished, including two novel species, <i>C. bambusicola</i> and <i>C. guangxiense</i>, and one known species, <i>C. metake</i>, which is a first report for China. These species have hitherto only been discovered on Bambusoideae, indicating that they probably have host preference.
DOI: 10.6084/m9.figshare.13107727.v1
title: Additional file 7 of Genome-wide analysis and prediction of genes involved in the biosynthesis of polysaccharides and bioactive secondary metabolites in high-temperature-tolerant wild Flammulina filiformis

description: Additional file 7: Table S4. A comparative analysis of distribution of putative genes and gene clusters (terpene and type I PKS) related to secondary metabolitic biosynthesis in different strains of the F. filiformis. A blast search was performed using the software blastall v2.2.26 and thethreshold parameter: identity &gt; 40% coverage &gt; 40%. “1”: implied the gene distribution in other strain and “0” means the gene probabaly is not distribution in other strain.
DOI: 10.6084/m9.figshare.19923763
title: Labour Costs on the Vegetables: A Research on the location effect on salaries in Jiangsu Province, China

description: ABSTRACT: In this study, the labour requirement and labour cost of common vegetable cultivation were investigated to help agricultural enterprises and family farms establishing reasonable “working hour” management systems in Jiangsu Province. The labour requirement of each step of three type of producers, agriculture enterprises, family farms, and private vegetable growers, in three regions in Jiangsu Province, named north, middle and south Jiangsu, was investigated by on-site observation or questionnaire survey during 2018 and 2019. The labour cost of each step and each vegetable was counted according to the labour requirement and the salary level. The results indicated that “residue cleaning”, “soil preparation and bedding”, “plant regulation”, “auxin treatment of tomato flowers” and “hand pollination” accounted for higher proportions of labour cost amongst the entire vegetable culture process. No significant differences in the labour requirements of the investigated vegetables were reported amongst three regions in Jiangsu Province. However, the order of labour cost is south Jiangsu &gt; north Jiangsu &gt; middle Jiangsu, due to the salary difference amongst three regions. Watermelon, broccoli and chive are more suitable for growing by agricultural enterprises since they have relatively low unit labour and high prices. We established a method to calculate and analyze labour requirement and cost of vegetable production in Jiangsu Province, which also may be instructive for other regions. In addition, our results provided useful data for various vegetable producers to improve their labour management.
DOI: 10.6084/m9.figshare.19923763.v1
title: Labour Costs on the Vegetables: A Research on the location effect on salaries in Jiangsu Province, China

description: ABSTRACT: In this study, the labour requirement and labour cost of common vegetable cultivation were investigated to help agricultural enterprises and family farms establishing reasonable “working hour” management systems in Jiangsu Province. The labour requirement of each step of three type of producers, agriculture enterprises, family farms, and private vegetable growers, in three regions in Jiangsu Province, named north, middle and south Jiangsu, was investigated by on-site observation or questionnaire survey during 2018 and 2019. The labour cost of each step and each vegetable was counted according to the labour requirement and the salary level. The results indicated that “residue cleaning”, “soil preparation and bedding”, “plant regulation”, “auxin treatment of tomato flowers” and “hand pollination” accounted for higher proportions of labour cost amongst the entire vegetable culture process. No significant differences in the labour requirements of the investigated vegetables were reported amongst three regions in Jiangsu Province. However, the order of labour cost is south Jiangsu &gt; north Jiangsu &gt; middle Jiangsu, due to the salary difference amongst three regions. Watermelon, broccoli and chive are more suitable for growing by agricultural enterprises since they have relatively low unit labour and high prices. We established a method to calculate and analyze labour requirement and cost of vegetable production in Jiangsu Province, which also may be instructive for other regions. In addition, our results provided useful data for various vegetable producers to improve their labour management.
DOI: 10.6084/m9.figshare.7865486
title: Study of cracks in concrete target under deep penetration by a projectile

description: Abstract A large number of cracks occur in concrete structure after projectile penetration. The study of crack distribution and propagation process is the basis of damage assessment, structural repair and high dynamic fracture mechanism. In this paper, wire saw cutting, X-ray computed tomography (X-CT) and mechanical property testing of damaged concrete were carried out on deep penetration targets. According to X-CT images of radial core samples in target and the mechanical properties of damaged concrete, the crack distribution in the target was divided into a plastic damage zone and a brittle damage zone, and the microcracks only existed in the plastic damage zone. The initial growth process of three-dimensional cracks was obtained by X-CT images of axial core samples in target, that is, the cracks in the pure mortar target gradually developed from the radial direction to the tangential direction, and the target containing coarse aggregate directly formed tangential cracks. The propagation progress of cracks was obtained through the target section, that is, the tangential cracks bent in the pure mortar target, and were relatively straight in the target containing coarse aggregate. A crack propagation model was established, and the tangential crack formula and the crack propagation velocity were obtained.
DOI: 10.6084/m9.figshare.7865486.v1
title: Study of cracks in concrete target under deep penetration by a projectile

description: Abstract A large number of cracks occur in concrete structure after projectile penetration. The study of crack distribution and propagation process is the basis of damage assessment, structural repair and high dynamic fracture mechanism. In this paper, wire saw cutting, X-ray computed tomography (X-CT) and mechanical property testing of damaged concrete were carried out on deep penetration targets. According to X-CT images of radial core samples in target and the mechanical properties of damaged concrete, the crack distribution in the target was divided into a plastic damage zone and a brittle damage zone, and the microcracks only existed in the plastic damage zone. The initial growth process of three-dimensional cracks was obtained by X-CT images of axial core samples in target, that is, the cracks in the pure mortar target gradually developed from the radial direction to the tangential direction, and the target containing coarse aggregate directly formed tangential cracks. The propagation progress of cracks was obtained through the target section, that is, the tangential cracks bent in the pure mortar target, and were relatively straight in the target containing coarse aggregate. A crack propagation model was established, and the tangential crack formula and the crack propagation velocity were obtained.
DOI: 10.6084/m9.figshare.14681250
title: Metadata record for the article: Signaling of MK2 Sustains Robust AP1 Activity for Triple Negative Breast Cancer Tumorigenesis through Direct Phosphorylation of JAB1

description: <b>Summary</b><br>

This
metadata record provides details of the data supporting the claims of the
related article: “Signaling of MK2 Sustains Robust AP1
Activity for Triple Negative Breast Cancer Tumorigenesis through Direct
Phosphorylation of JAB1”.

The
related study showed that p38MAPK signalling pathway regulation of activator
protein 1 (AP1) activity involves both MAPKAPK2 (MK2) and JAB1, a known JUN
binding protein.

 

Type of data:
signalling pathway activity 

Subject of
data: antibodies; Eukaryotic cell lines (ATCC); <i>Mus musculus</i> (Foxn1nu, female, Catalog# 007850, The Jackson
laboratory)

 

<b>Data
access</b>

The
following files underlying the figures in the related manuscript are openly
available with this data record:

- Fig.1
data.xlsx (Fig.1a,1b of the related article)

- Fig.2
data.xlsx (Fig.2c,2d
and 2e)

- Fig.3
data.xlsx (Fig.3e and
3f)

- Fig.4
data.xlsx (Fig.4f,4g and 4f)

- Fig.5
data.xlsx (Fig.5b,5c and 5d)

- Fig.6
data.xlsx

- Fig.7
data.xlsx (Fig. 7e and 7f)

- Fig.8
data.xlsx (Fig.8a and 8c)

 

All other
data supporting the related study can be found in the supplementary information
file of the related article, and the corresponding author can make any materials
available upon request. Un-cropped gels and western blots for Fig. to Fig.5
were included in Supplementary Materials (Fig.S11).”

 

JAB1
expression in different breast cancer subtypes were downloaded from https://tcga.xenahubs.net/download/TCGA.BRCA.sampleMap/HiSeqV2.gz,
and https://tcga.xenahubs.net/download/TCGA.BRCA.sampleMap/BRCA_clinicalMatrix.gz.
For analysis of p38MAPK activity in breast cancer, Reverse Phase Protein Array
(RPPA) z score and corresponding clinical data from TCGA Breast Cancer Invasive
Carcinoma, PanCancer Atlas were first downloaded through cBioportal (https://www.cbioportal.org/).

 

<b>Corresponding author(s) for this study</b>

Shuang
Huang, Department of Anatomy and Cell Biology, University of Florida College of
Medicine, Gainesville, FL 32610. E-mail: shuanghuang@ufl.edu<br>
<b></b>

<b>Study
approval </b>

University
of Florida Institutional Animal Care and Use Committee.
DOI: 10.6084/m9.figshare.7865510
title: Development and Validation of UHPLC-MS/MS for Simultaneous Determination of Scutellarin and Salicylic Acid in Rat Plasma: Application to Herb-Drug Pharmacokinetic Interaction Study

description: Dengzhanxixin injection (DI) product has been clinically proven to be effective for treating cardio-cerebrovascular disease. Furthermore, herb-drug interactions between the DI product and drugs that are commonly co-administered, such as aspirin, must be explored to ensure safe clinical use. A reliable ultra-performance liquid chromatography-tandem mass spectrometry (UHPLC-MS/MS) method was developed and validated for simultaneous determination of scutellarin and salicylic acid (SA) in rat plasma. The proposed method has been successfully applied to pharmacokinetic studies on analytes in rats afteri.g. administration of aspirin alone, i.v. administration of DI alone or a combination of both (i.g .: 10 mg kg-1 aspirin,i.v .: 4 mL kg-1 DI). Both SA and scutellarin exhibited a two-compartment model pharmacokinetic profile. Aspirin did not change the concentration-time course for scutellarin, but DI decreased the peak plasma concentration and the area under the SA curve. This study indicates that co-administration of aspirin and DI can cause an apparent herb-drug pharmacokinetic interaction in rats.