cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3737996_d6.v1
title: Additional file 6: Table S5. of SynthEx: a synthetic-normal-based DNA sequencing tool for copy number alteration detection and tumor heterogeneity profiling

description: TCGA head and neck squamous cell carcinoma clinical information of tumors used in comparisons (nâ  =â  100). (XLSX 55 kb)
DOI: 10.6084/m9.figshare.c.3738002_d5
title: Additional file 5: Table S3. of Emerging role of mutations in epigenetic regulators including MLL2 derived from The Cancer Genome Atlas for cervical cancer

description: Mutated driver genes and variants in patients. (XLS 99 kb)
DOI: 10.6084/m9.figshare.c.3737993_d7
title: Additional file 16: Table S4. of High-fat feeding rather than obesity drives taxonomical and functional changes in the gut microbiota in mice

description: Diet-induced changes in pathway. (XLS 9 kb)
DOI: 10.6084/m9.figshare.c.3737996_d6
title: Additional file 6: Table S5. of SynthEx: a synthetic-normal-based DNA sequencing tool for copy number alteration detection and tumor heterogeneity profiling

description: TCGA head and neck squamous cell carcinoma clinical information of tumors used in comparisons (nâ  =â  100). (XLSX 55 kb)
DOI: 10.6084/m9.figshare.c.3737993_d6
title: Additional file 15: Table S3. of High-fat feeding rather than obesity drives taxonomical and functional changes in the gut microbiota in mice

description: Strain specific fucntion changes responding to high-fat diet. (XLS 26 kb)
DOI: 10.6084/m9.figshare.c.3737993_d6.v1
title: Additional file 15: Table S3. of High-fat feeding rather than obesity drives taxonomical and functional changes in the gut microbiota in mice

description: Strain specific fucntion changes responding to high-fat diet. (XLS 26 kb)
DOI: 10.6084/m9.figshare.c.3737996_d5.v1
title: Additional file 5: Table S4. of SynthEx: a synthetic-normal-based DNA sequencing tool for copy number alteration detection and tumor heterogeneity profiling

description: Statistical measurements comparing SNP arrays and whole exome callers to whole genome copy number data utilizing tumor and matched normal as the ground truth in TCGA breast cancer (nâ  =â  92). (XLSX 107 kb)
DOI: 10.6084/m9.figshare.c.3738002_d4.v1
title: Additional file 4: Table S2. of Emerging role of mutations in epigenetic regulators including MLL2 derived from The Cancer Genome Atlas for cervical cancer

description: Driver genes and core pathways. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3737996_d5
title: Additional file 5: Table S4. of SynthEx: a synthetic-normal-based DNA sequencing tool for copy number alteration detection and tumor heterogeneity profiling

description: Statistical measurements comparing SNP arrays and whole exome callers to whole genome copy number data utilizing tumor and matched normal as the ground truth in TCGA breast cancer (nâ  =â  92). (XLSX 107 kb)
DOI: 10.6084/m9.figshare.c.3738002_d4
title: Additional file 4: Table S2. of Emerging role of mutations in epigenetic regulators including MLL2 derived from The Cancer Genome Atlas for cervical cancer

description: Driver genes and core pathways. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3737827_d1.v1
title: Additional file 1: of Online zinc reduction-sequential injection analysis for the determination of nitrogen species in extracts of riverine sediment

description: Data obtained from optimization experiments and employed for regression analyses. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3737827_d1
title: Additional file 1: of Online zinc reduction-sequential injection analysis for the determination of nitrogen species in extracts of riverine sediment

description: Data obtained from optimization experiments and employed for regression analyses. (XLSX 10Â kb)
DOI: 10.15468/dl.zxxgck
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myriolepis zonifer Lockington, 1880",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035494-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3737782_d1.v1
title: Additional file 1: of Transcriptomic buffering of cryptic genetic variation contributes to meningococcal virulence

description: Contains supplemental results and discussion describing the results of ex vivo cross-condition gene expression comparisons in strain MC58 along with the corresponding supplemental references and the figure legends to the supplemental Figures S1 to S8 as well as the supplemental Tables S1 to S4. Figure S1. Experimental setup of the study. Figure S2. Comparison of the N. meningitidis α522 and MC58 genomes. Figure S3. qRT-PCR validation of ex vivo cross-strain expression differences in selected putative virulence-associated and regulatory genes. Figure S4. Growth of strain α522 in minimal medium supplemented with different combinations of amino acids. Figure S5. Comparison of the stringent response in N. meningitidis strain MC58 and α522. Figure S6. Genetic map of the relA and spoT loci in the mutant strains. Figure S7. Quality assessment of total RNA and microarray data. Figure S8. Discriminator regions in genes differently expressed in different ex vivo conditions in MC58. Table S1. Strain α522 specific genes. Table S2. Oligonucleotides used in this study. Table S3. Plasmids used in this study. Table S4. Strains used in this study. (ZIP 19627 kb)
DOI: 10.6084/m9.figshare.c.3737782_d1
title: Additional file 1: of Transcriptomic buffering of cryptic genetic variation contributes to meningococcal virulence

description: Contains supplemental results and discussion describing the results of ex vivo cross-condition gene expression comparisons in strain MC58 along with the corresponding supplemental references and the figure legends to the supplemental Figures S1 to S8 as well as the supplemental Tables S1 to S4. Figure S1. Experimental setup of the study. Figure S2. Comparison of the N. meningitidis α522 and MC58 genomes. Figure S3. qRT-PCR validation of ex vivo cross-strain expression differences in selected putative virulence-associated and regulatory genes. Figure S4. Growth of strain α522 in minimal medium supplemented with different combinations of amino acids. Figure S5. Comparison of the stringent response in N. meningitidis strain MC58 and α522. Figure S6. Genetic map of the relA and spoT loci in the mutant strains. Figure S7. Quality assessment of total RNA and microarray data. Figure S8. Discriminator regions in genes differently expressed in different ex vivo conditions in MC58. Table S1. Strain α522 specific genes. Table S2. Oligonucleotides used in this study. Table S3. Plasmids used in this study. Table S4. Strains used in this study. (ZIP 19627 kb)
DOI: 10.6084/m9.figshare.c.3736804_d32.v1
title: Additional file 39: of 
                     OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap

description: Supporting data. (XLSX 79 kb)
DOI: 10.6084/m9.figshare.c.3736804_d31.v1
title: Additional file 38: Table S15. of 
                     OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap

description: Genome-wide significantly associated loci with GL in full population, indica population, and japonica population using FarmCPU and QTL co-localized with linkage mapping. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3736804_d32
title: Additional file 39: of 
                     OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap

description: Supporting data. (XLSX 79 kb)
DOI: 10.6084/m9.figshare.c.3736804_d31
title: Additional file 38: Table S15. of 
                     OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap

description: Genome-wide significantly associated loci with GL in full population, indica population, and japonica population using FarmCPU and QTL co-localized with linkage mapping. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3736804_d30.v1
title: Additional file 37: Table S8. of 
                     OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap

description: Genome-wide significantly associated loci with GL in japonica population using GLM (Q) model and QTL co-localized with linkage mapping. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3736804_d29.v1
title: Additional file 36: Table S7. of 
                     OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap

description: Genome-wide significantly associated loci with GL in indica population using GLM (Q) model and QTL co-localized with linkage mapping. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3736804_d30
title: Additional file 37: Table S8. of 
                     OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap

description: Genome-wide significantly associated loci with GL in japonica population using GLM (Q) model and QTL co-localized with linkage mapping. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3736804_d29
title: Additional file 36: Table S7. of 
                     OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap

description: Genome-wide significantly associated loci with GL in indica population using GLM (Q) model and QTL co-localized with linkage mapping. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3736804_d28
title: Additional file 35: Table S6. of 
                     OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap

description: Genome-wide significantly associated loci with GL in full population using GLM (Q) model and QTL co-localized with linkage mapping. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3736804_d27
title: Additional file 34: Table S5. of 
                     OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap

description: Genome-wide significantly associated loci (â  log10 (P)â  â Ľâ  7.9) with GL in full population, indica and japonica population using CMLM model and QTL co-localized with linkage mapping. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3736804_d28.v1
title: Additional file 35: Table S6. of 
                     OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap

description: Genome-wide significantly associated loci with GL in full population using GLM (Q) model and QTL co-localized with linkage mapping. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3736804_d27.v1
title: Additional file 34: Table S5. of 
                     OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap

description: Genome-wide significantly associated loci (â  log10 (P)â  â Ľâ  7.9) with GL in full population, indica and japonica population using CMLM model and QTL co-localized with linkage mapping. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3736804_d25.v1
title: Additional file 32: Table S1. of 
                     OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap

description: Information of Oryza sativa L. varieties and wild rice on variety name, geographic source, stratification referred by STRUCTURE, the integrated stratification, grain lengths, and allelic variations of grain length-related genes. (XLSX 115 kb)
DOI: 10.15468/dl.39x7tf
title: Occurrence Download

description: A dataset containing 187 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Niphon spinosus Cuvier, 1828",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 187 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035495-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3734329_d1
title: Additional file 10: Table S4. of Prediction of reversible disulfide based on features from local structural signatures

description: Representative human proteins with predicted reversible disulfides (XLS). (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3734317_d4
title: Additional file 4: of Development and Genetic Characterization of A Novel Herbicide (Imazethapyr) Tolerant Mutant in Rice (Oryza sativa L.)

description: Table S1C_DUS characterization for genetic integrity testing. (XLS 26 kb)
DOI: 10.6084/m9.figshare.c.3734317_d4.v1
title: Additional file 4: of Development and Genetic Characterization of A Novel Herbicide (Imazethapyr) Tolerant Mutant in Rice (Oryza sativa L.)

description: Table S1C_DUS characterization for genetic integrity testing. (XLS 26 kb)
DOI: 10.6084/m9.figshare.c.3734320_d1
title: Additional file 1: of Evolutionary gradient of predicted nuclear localization signals (NLS)-bearing proteins in genomes of family Planctomycetaceae

description: Table S1 (A). NLS-bearing protein abundance in the 27 strains; Table S1 (B). Normalized NLS-bearing protein abundance of the 27 strains. Table S2. Annotation of the 993 NLS-bearing proteins with SwissProt database. Table S3. Annotation of the 993 NLS-bearing proteins with SwissProt database. (XLSX 107Â kb)
DOI: 10.6084/m9.figshare.c.3734317_d1.v1
title: Additional file 1: Table S1A. of Development and Genetic Characterization of A Novel Herbicide (Imazethapyr) Tolerant Mutant in Rice (Oryza sativa L.)

description: SSR primers used for testing the genomic similarity between the WT and HTM-N22. (XLS 43 kb)
DOI: 10.6084/m9.figshare.c.3734317_d1
title: Additional file 1: Table S1A. of Development and Genetic Characterization of A Novel Herbicide (Imazethapyr) Tolerant Mutant in Rice (Oryza sativa L.)

description: SSR primers used for testing the genomic similarity between the WT and HTM-N22. (XLS 43 kb)
DOI: 10.6084/m9.figshare.c.3734206_d8
title: Additional file 4: Table S3. of Genome-wide analysis of microRNA targeting impacted by SNPs in cucumber genome

description: The primers and relative expression of cucumber miRNA. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3734206_d8.v1
title: Additional file 4: Table S3. of Genome-wide analysis of microRNA targeting impacted by SNPs in cucumber genome

description: The primers and relative expression of cucumber miRNA. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3734206_d7.v1
title: Additional file 3: Table S2. of Genome-wide analysis of microRNA targeting impacted by SNPs in cucumber genome

description: Cucumber-specific miRNA. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3734206_d7
title: Additional file 3: Table S2. of Genome-wide analysis of microRNA targeting impacted by SNPs in cucumber genome

description: Cucumber-specific miRNA. (XLSX 22 kb)
DOI: 10.15468/dl.57venh
title: Occurrence Download

description: A dataset containing 402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lophiomus setigerus (Vahl, 1797)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 402 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035497-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3734206_d5
title: Additional file 1: Table S1. of Genome-wide analysis of microRNA targeting impacted by SNPs in cucumber genome

description: Conserved and known miRNA of cucumber. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3734206_d5.v1
title: Additional file 1: Table S1. of Genome-wide analysis of microRNA targeting impacted by SNPs in cucumber genome

description: Conserved and known miRNA of cucumber. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3734215_d3
title: Additional file 3: Table S3. of Suppression of Laccase 2 severely impairs cuticle tanning and pathogen resistance during the pupal metamorphosis of Anopheles sinensis (Diptera: Culicidae)

description: Prediction of cis-acting transcriptional regulatory elements upstream. 7.5Â kb of Laccase 2. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3734215_d3.v1
title: Additional file 3: Table S3. of Suppression of Laccase 2 severely impairs cuticle tanning and pathogen resistance during the pupal metamorphosis of Anopheles sinensis (Diptera: Culicidae)

description: Prediction of cis-acting transcriptional regulatory elements upstream. 7.5Â kb of Laccase 2. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3734206_d4.v1
title: Additional file 13: Table S10. of Genome-wide analysis of microRNA targeting impacted by SNPs in cucumber genome

description: The primers for real-time PCR. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3734206_d3.v1
title: Additional file 12: Table S9. of Genome-wide analysis of microRNA targeting impacted by SNPs in cucumber genome

description: The primers for 5â  RACE. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3734206_d3
title: Additional file 12: Table S9. of Genome-wide analysis of microRNA targeting impacted by SNPs in cucumber genome

description: The primers for 5â  RACE. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3734206_d4
title: Additional file 13: Table S10. of Genome-wide analysis of microRNA targeting impacted by SNPs in cucumber genome

description: The primers for real-time PCR. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3734215_d1.v1
title: Additional file 1: Table S1. of Suppression of Laccase 2 severely impairs cuticle tanning and pathogen resistance during the pupal metamorphosis of Anopheles sinensis (Diptera: Culicidae)

description: Primers used in this study. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3734215_d1
title: Additional file 1: Table S1. of Suppression of Laccase 2 severely impairs cuticle tanning and pathogen resistance during the pupal metamorphosis of Anopheles sinensis (Diptera: Culicidae)

description: Primers used in this study. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3734074_d2.v1
title: Additional file 2: of Construction of a high-density genetic map and the X/Y sex-determining gene mapping in spinach based on large-scale markers developed by specific-locus amplified fragment sequencing (SLAF-seq)

description: High-density genetic linkage map of spinach constructed in this study. (XLSX 100 kb)
DOI: 10.6084/m9.figshare.c.3734074_d3.v1
title: Additional file 3: of Construction of a high-density genetic map and the X/Y sex-determining gene mapping in spinach based on large-scale markers developed by specific-locus amplified fragment sequencing (SLAF-seq)

description: The SLAF markers encompassed in the sex-determining gene locus as revealed by SLAF-BSA analysis. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3734074_d3
title: Additional file 3: of Construction of a high-density genetic map and the X/Y sex-determining gene mapping in spinach based on large-scale markers developed by specific-locus amplified fragment sequencing (SLAF-seq)

description: The SLAF markers encompassed in the sex-determining gene locus as revealed by SLAF-BSA analysis. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3734029_d8.v1
title: Additional file 8: of Comparison of triple-negative breast cancer molecular subtyping using RNA from matched fresh-frozen versus formalin-fixed paraffin-embedded tissue

description: Table S4. TNBC subtype comparisons after removal of differentially expressed genes. TNBC subtype comparison between FF and FFPE samples after differential gene removal. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3734074_d2
title: Additional file 2: of Construction of a high-density genetic map and the X/Y sex-determining gene mapping in spinach based on large-scale markers developed by specific-locus amplified fragment sequencing (SLAF-seq)

description: High-density genetic linkage map of spinach constructed in this study. (XLSX 100 kb)
DOI: 10.6084/m9.figshare.c.3734029_d8
title: Additional file 8: of Comparison of triple-negative breast cancer molecular subtyping using RNA from matched fresh-frozen versus formalin-fixed paraffin-embedded tissue

description: Table S4. TNBC subtype comparisons after removal of differentially expressed genes. TNBC subtype comparison between FF and FFPE samples after differential gene removal. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3734074_d1
title: Additional file 1: of Construction of a high-density genetic map and the X/Y sex-determining gene mapping in spinach based on large-scale markers developed by specific-locus amplified fragment sequencing (SLAF-seq)

description: Genotype for BC1 individuals. (XLSX 2427 kb)
DOI: 10.6084/m9.figshare.c.3734074_d1.v1
title: Additional file 1: of Construction of a high-density genetic map and the X/Y sex-determining gene mapping in spinach based on large-scale markers developed by specific-locus amplified fragment sequencing (SLAF-seq)

description: Genotype for BC1 individuals. (XLSX 2427 kb)
DOI: 10.6084/m9.figshare.c.3734029_d7.v1
title: Additional file 7: of Comparison of triple-negative breast cancer molecular subtyping using RNA from matched fresh-frozen versus formalin-fixed paraffin-embedded tissue

description: Table S3. Differential gene expression. Differentially expressed genes between 21 paired FF- and FFPE-derived RNA samples from TNBC tumors. (XLSX 2255Â kb)
DOI: 10.6084/m9.figshare.c.3734029_d7
title: Additional file 7: of Comparison of triple-negative breast cancer molecular subtyping using RNA from matched fresh-frozen versus formalin-fixed paraffin-embedded tissue

description: Table S3. Differential gene expression. Differentially expressed genes between 21 paired FF- and FFPE-derived RNA samples from TNBC tumors. (XLSX 2255Â kb)
DOI: 10.6084/m9.figshare.c.3733108_d1.v1
title: Additional file 1: of The Hippo signaling pathway: a potential therapeutic target is reversed by a Chinese patent drug in rats with diabetic retinopathy

description: Data of the expreiment. (XLS 39Â kb)
DOI: 10.6084/m9.figshare.c.3728767_d34.v1
title: DRA002748

description: List of DRA (http://trace.ddbj.nig.ac.jp/dra/index_e.html) accession numbers
of the FANTOM5 samples, sequences and genomic coordinations.

Files are in tab-delimited format, which includes
* Library ID
* FFID
* BioSamples accession number
* DRA experiment accession number
* DRA run accession numbers
* DRA analysis accession number for genomic coordination (BAM file)
* DRA analysis accession number for CTSS (BED file)
* Experiment method (CAGE/RNA-Seq/sRNA-Seq)
DOI: 10.6084/m9.figshare.c.3733108_d1
title: Additional file 1: of The Hippo signaling pathway: a potential therapeutic target is reversed by a Chinese patent drug in rats with diabetic retinopathy

description: Data of the expreiment. (XLS 39Â kb)
DOI: 10.6084/m9.figshare.c.3728767_d34
title: DRA002748

description: List of DRA (http://trace.ddbj.nig.ac.jp/dra/index_e.html) accession numbers
of the FANTOM5 samples, sequences and genomic coordinations.

Files are in tab-delimited format, which includes
* Library ID
* FFID
* BioSamples accession number
* DRA experiment accession number
* DRA run accession numbers
* DRA analysis accession number for genomic coordination (BAM file)
* DRA analysis accession number for CTSS (BED file)
* Experiment method (CAGE/RNA-Seq/sRNA-Seq)
DOI: 10.6084/m9.figshare.c.3728767_d33.v1
title: DRA002216

description: List of DRA (http://trace.ddbj.nig.ac.jp/dra/index_e.html) accession numbers
of the FANTOM5 samples, sequences and genomic coordinations.

Files are in tab-delimited format, which includes
* Library ID
* FFID
* BioSamples accession number
* DRA experiment accession number
* DRA run accession numbers
* DRA analysis accession number for genomic coordination (BAM file)
* DRA analysis accession number for CTSS (BED file)
* Experiment method (CAGE/RNA-Seq/sRNA-Seq)
DOI: 10.6084/m9.figshare.c.3728767_d32.v1
title: DRA002747

description: List of DRA (http://trace.ddbj.nig.ac.jp/dra/index_e.html) accession numbers
of the FANTOM5 samples, sequences and genomic coordinations.

Files are in tab-delimited format, which includes
* Library ID
* FFID
* BioSamples accession number
* DRA experiment accession number
* DRA run accession numbers
* DRA analysis accession number for genomic coordination (BAM file)
* DRA analysis accession number for CTSS (BED file)
* Experiment method (CAGE/RNA-Seq/sRNA-Seq)