cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5718418.v1
title: Implementation of dental specialty centers: a descriptive analysis of the current status in the Brazilian territory

description: ABSTRACT This study aimed to assess the current implementation status of Dental Specialty Centers (Centros de Especialidades Odontológicas - CEO) in Brazil. The sample included CEOs implemented up to November 2015 in the 27 Brazilian federative units. Data were obtained directly from the database of the Informatics Department of the Brazilian Unified Health System, according to the National Registry of Health Facilities (NRHF) of Dental Specialty Centers of all Brazilian regions. Primary care data were also collected from the cities with implemented CEOs, including coverage status of the Family Health Strategy (FHS) and number of Oral Health Teams (OHT) I and II, at 2 collection periods (January 2006 and November 2015). There were 1019 CEOs implemented in Brazil, which were unequally distributed among the Brazilian states, with prevalence of implementation of CEOs type II (n=503, 49.4%). The statistical analysis showed significant difference between the three types of CEO (I, II, and III) and the variables of coverage rate (FHS) and number of teams (OHT I, OHT II) at both data collection periods. Although presenting an evolutionary aspect in the implementation of CEOs, the implementation of medium-complexity care in Brazil is disorganized.
DOI: 10.6084/m9.figshare.13585235.v4
title: Raw data of the study "Novel prognostic genes and subclasses of acute myeloid leukemia revealed by survival analysis of gene expression data"

description: The normalized read counts (RNA-seq) data of 18379 genes of 173 AML patients and their clinical data (downloaded from TCGA) and The gene expression and clinical data of 466 genes of 405 AML patients (downloaded from OHSU) datasets.
DOI: 10.6084/m9.figshare.21554391.v5
title: Zebra Mussel Analysis

description: Raw data and R code used to analyze the effects of artificial Zebra Mussel druses on benthic macroinvertebrate communities and carbon accumulation.
DOI: 10.6084/m9.figshare.2067123
title: Structural geometry and kinematics of the Ailao Shan shear zone: insights from integrated structural, microstructural, and fabric studies of the Yao Shan complex, Yunnan, Southwest China

description: The Yao Shan complex, a massif near the southern segment of the Ailao Shan–Red River (ASRR) shear zone, bears important information on the structural framework of the massif and the kinematics of ductile shearing along the ASRR shear zone. In this contribution, structural, microstructural, quartz c-axis fabric, magnetic fabric, and geochronologic data are used to determine the structural framework of the Yao Shan massif and its tectonic implications for the ASRR shear zone. The Yao Shan complex is characterized by an overall linear A-type antiform that contains a core of high-grade metamorphic rocks with Palaeoproterozoic to Mesozoic protoliths and a mantle of Permo-Triassic low-grade rocks. Both the high-grade metamorphic core and low-grade Permo-Triassic rocks have experienced progressive ductile shearing. Anisotropy of magnetic susceptibility (AMS) results from 17 samples collected along the Xinjie–Pingbian section across the complex show that magnetic lineation (<i>K<sub>max</sub></i>) and foliation (<i>K<sub>max</sub></i>–<i>K<sub>int</sub></i>) are generally subparallel to the corresponding structural elements in the sheared rocks. The shape parameter E values of the magnetic ellipsoids are indicative of dominantly oblate and plane strain, but vary with protolith type and degree of strain among the various rock types. In agreement with the field and microstructural observations, the corrected degree of anisotropy (Pj) values reflect high shear strain in the core rocks and relatively low shear strain in the low-grade strata. A kinematic analysis based on structural and magnetic fabric data shows that both left- and right-lateral shear occurred during the deformation of the Yao Shan complex. Therefore, instead of being an element of the ASRR shear zone, the Yao Shan complex constitutes a crustal-scale inharmonic A-type fold with a fold axis parallel to the stretching lineation. Geochronologic data reveal that the folding occurred coevally with ductile shearing of the middle to lower crust between ca. 30 and 21 Ma.
DOI: 10.6084/m9.figshare.6176927.v1
title: Known Undisclosed Paid Editors (English Wikipedia)

description: This dataset contains a manually curated set of known undisclosed paid editor (UPE) accounts from Wikipedia. This is not a complete set of known editors. Editors who do not appear in this set are not guaranteed to not be paid editors.<br>See also https://en.wikipedia.org/wiki/Wikipedia:Paid-contribution_disclosure<br><br>The dataset contains four columns:<br> - <b>user_name</b>: The username of the UPE - <b>case_page_name</b>: The page name (title) of a page describing the case through which paid editing was discovered. - <b>type</b>: One of three types of UPEs (described below) - <b>notes</b>: Any notes that a dataset curator chose to include with the example. <br><br><br>Type 1User makes just over 10 minor edits. Is quiet for a few days well waiting for autoconfirm (user right) to kick in (takes 4 days). Then creates a promotional article in one big edit followed by the account going silent.This is the main priority. These are present in the largest numbers and are the clearest pattern. They also cause the most damage to our shared brand.Type 2User is an obvious newbie. Makes lots of mistakes. Often turns out to be internal staff. Not a key priority. We already manage these cases fairly well as they are often so obvious.Type 3Undisclosed paid editor, but one who only moves on to new accounts once their current account gets detected. A serious problem--these will be harder to detect as we will have smaller numbers of these cases. Also a long time will need to pass before a pattern becomes present
DOI: 10.6084/m9.figshare.8259284.v1
title: Polymerase chain reaction for sexing in giant anteater's (Myrmecophaga tridactyla)

description: ABSTRACT There is no sexual dimorphism in the giant anteater (Myrmecophaga tridactyla), so the distinction between males and females become necessary, especially in animals with reproductive purpose. The Polymerase Chain Reaction (PCR), among the various techniques used for characterization, is considered a modern and effective means of sex determination and used in mammals to identify the Y chromosome (SRY) specifies genetic sequence. The objective of this work is to standardize a protocol for sex determination of giant anteater by PCR technique, using genetic material extracted from the capillary bulb of these animals. With this protocol was possible the sex determination of seven tested animals, being compatible with the sex of each individual. In conclusion, this protocol showed total effectiveness, being possible to determine the giant anteater sex using genetic material extracted from the capillary bulb.
DOI: 10.6084/m9.figshare.7851047.v2
title: Coder A

description: The standard biomedical terminologies ICD-10, ICD-O, TNM, MeSH, NCIt, MedDRA, and SNOMED CT were used in a case study where two dimensions of cancer (anatomy and histology) had already been coded in a dataset using a custom terminology (ROCHE).
DOI: 10.6084/m9.figshare.19778830.v1
title: Impacts of Plastic Waste Management

description: This dataset consists of the data used in the paper "Impacts of Plastic Waste Management Strategies", published in environmental reviews. <br> Note that for the study, reviews and commentaries were excluded. The intervetion categories marked OTHER and Multiple were also excluded. <br> Each row in the sheet corresponds to an impact of plastic waste mitigation identified in the literature. For our analysis, on the impacts marked "YES" in column J ("FINAL") were included in the analysis. <br> Please email Levi Helm (lthelm@asu.edu) with any questions.
DOI: 10.6084/m9.figshare.25927309.v1
title: energy plots

description: Python file for energy plots
DOI: 10.6084/m9.figshare.7932125.v1
title: gVCF_HG02597

description: 1000 Genomes gVCF mapped to hs37d5 for HG02597. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.1449225.v2
title: Table poléométrique - complete data set

description: Data set from the "table poléométrique" made in 1782 by Charles de Fourcroy. It is a data set where 218 towns all around the world are described from a morphology point of view (urban areas). However the perspective particulary focus on France territory (130 records). Data set is based on annex of the article published by François de Dainville in Population (Grandeur et population des villes au XVIIIe siècle, Population, 1958, 13(3), pp. 459-480). This work takes place within a PhD in archaeology and geography - UMR 8504 Géographie-cités, Université Paris I - Panthéon-Sorbonne.
DOI: 10.6084/m9.figshare.19735564.v3
title: Plant responses to soil biota depend on precipitation history, plant diversity, and productivity

description: Data from Lundell et al. 2022 Ecology. This includes plant biomass data from five species used in a growth chember experiment. These species were seeded together into pots inoculated with live and sterile soils collected from 12 grassland sites that had been subjected to drought treatments. The pots were also exposed to another drought treatment over the course of the study.
DOI: 10.6084/m9.figshare.26352349.v1
title: data_set_ciclismo_v3.xlsx

description: Data base proyecto
DOI: 10.6084/m9.figshare.20517372.v2
title: Data Base Tumor 2014-2020

description: Data contains a dataset about meningioma cases 2014-2020 from Dr. Soetomo General Academic Hospital, Surabaya, East Java, Indonesia. It contains: sex, age, range of age, diagnostic, treatment, preoperative conditions, history of contraceptive use, operating time, tumor location, Simpson grade, anatomical pathology, WHO grading, ICH post OP, infection after surgery, neurological deterioration and death in 30 days
DOI: 10.11583/dtu.22786157.v1
title: Supplementary Information to publication "CASCADE-Cas3 Enables Highly Efficient Genome Engineering in <i>Streptomyces</i> Species"

description: Supplementary Information for manuscript "CASCADE-Cas3 Enables Highly Efficient Genome Engineering in <i>Streptomyces </i>Species". Includes additional data related to genome mining, bioinformatics, as well as plasmids and primers used in the study. Abstract: Type I CRISPR systems are widespread in bacteria and archaea. Compared to more widely applied type II systems, type I systems differ in the multi-effector CASCADE needed for crRNA processing and target recognition, as well as the processive nature of the hallmark nuclease Cas3. Given the widespread nature of type I systems, the processive nature of Cas3 and the recombinogenic overhangs created by Cas3, we hypothesized that Cas3 would be uniquely positioned to enable efficient genome engineering in streptomycetes. Here, we report a new type I based CRISPR genome engineering tool for streptomycetes. The plasmid system, called pCRISPR-Cas3, utilizes a compact type I-C CRISPR system and enables highly efficient genome engineering. pCRISPR-Cas3 outperforms pCRISPR-Cas9 and facilitates targeted and random sized deletions. Furthermore we demonstrate its ability to effectively perform substitutions of large genomic regions such as biosynthetic gene clusters. Without additional modifications, pCRISPR-Cas3 enabled genome engineering in several <i>Streptomyces </i>species at high efficiencies.
DOI: 10.6084/m9.figshare.12636470.v2
title: XES dataset MbNO - XFEL - timeresolved data

description: Data from Figure 3 in the main text of the publication.Explanation of the file name:Kb = Kbeta Xray emission spectrumKa = Kalpha Xray emission spectrummin = negative0_9ps = Pump probe time delay of 0.9 ps0 = 0 stands for laser on, 1 for laser off, pp for pump-probespectrum = that it is a spectrumthe rest labels the columns of the datae.g. E = energy (eV)sum = sum of the signal measured over several spectraave = average signal over the measured spectrastd = standard deviation betwenn the measurements (calculated for the average signal)smooth = smoothed data (details about smoothing can be found in the SI of the paper.sqrt = squareroot<br>
DOI: 10.6084/m9.figshare.22251223.v2
title: Cellular barcodes in human fibroblasts and human induced pluripotent stem cells extracted from bulk genomic DNA and linked with cellular barcodes extracted from single-cell copy DNA

description: Targeted sequencing of barcodes from genomic DNA harvested from barcoded human fibroblast-like cells (hiF-T cells) and human induced pluripotent stem cells (hiPS cells) derived from hiF-T cells. hiF-T cells were transduced with barcode libraries consisting of semi-random 100-mers in the 3' UTR of GFP and permitted to undergo several cell divisions before being split and seeded for parallel reprogrammings. Both barcoded hiF-T cells and hiPS cells were harvested for isolation of genomic DNA before we performed targeted amplification of the barcode vector for sequencing. See Jain et al. citation for additional details.
DOI: 10.6084/m9.figshare.25656270.v1
title: Supplementary Material for: Brain MRI injury patterns across gestational age among preterm infants with perinatal asphyxia.

description: Introduction: Brain injury patterns of preterm infants with perinatal asphyxia (PA) are underreported. We aimed to explore brain magnetic resonance imaging (MRI) findings and associated neurodevelopmental outcome in these newborns. 
Methods: Retrospective multicenter study including infants with gestational age (GA) 24.0-36.0 weeks and PA, defined as ≥2 of the following: 1) umbilical cord pH ≤7.00, 2) 5-minute Apgar ≤5, 3) fetal distress or systemic effects of PA. Findings were compared between GA &lt;28.0 (group 1), 28.0-31.9 (group 2) and 32.0-36.0 weeks (group 3). Early MRI (&lt;36 weeks postmenstrual age or &lt;10 postnatal days) was categorized according to predominant injury pattern, and MRI around term-equivalent age (TEA, 36.0-44.0 weeks and ≥10 postnatal days) using the Kidokoro score. Adverse outcomes included death, cerebral palsy, epilepsy, severe hearing/visual impairment, or neurodevelopment &lt;-1 SD at 18-24 months corrected age. 
Results: One hundred nineteen infants with early MRI (n=94) and/or MRI around TEA (n=66) were included. Early MRI showed predominantly hemorrhagic injury in group 1 (56%) and 2 (45%), and white matter (WM)/watershed injury in group 3 (43%). Around TEA, WM scores were highest in group 2 and 3. DGM (aOR 15.0, 95% CI 3.8 – 58.9) and hemorrhagic injury on early MRI (aOR 2.5, 95% CI 1.3 – 4.6), and Kidokoro WM (aOR 1.3, 95% CI 1.0-1.6) and DGM sub-scores (aOR 4.8, 95% CI 1.1–21.7) around TEA were associated with adverse neurodevelopmental outcome.
Conclusion: The brain injury patterns following PA in preterm infants differ across GA. Particularly DGM abnormalities are associated with adverse neurodevelopmental outcomes.
DOI: 10.6084/m9.figshare.28639499
title: SPSS Data: Sensory evaluation of traditional and pipe distillation of <i>areke</i><i> </i>samples

description: Sensory evaluation of traditional and pipe distillation of <i>areke</i><i> </i>samples
DOI: 10.6084/m9.figshare.28639499.v3
title: SPSS Data: Sensory evaluation of traditional and pipe distillation of <i>areke</i><i> </i>samples

description: Sensory evaluation of traditional and pipe distillation of <i>areke</i><i> </i>samples
DOI: 10.6084/m9.figshare.27109648.v1
title: Supplementary Material for: Additive inhibition of HERG channels expressed in Xenopus oocytes by antipsychotic drugs and citrus juice flavonoid naringenin

description: Background: Citrus juice has been shown to cause QT prolongation in electrocardiograms of healthy volunteers and naringenin, a major flavonoid found in citrus juice, has been identified as the potent inhibitor HERG channels as the cause of QT prolongation. Several antipsychotic drugs such as haloperidol, chlorpromazine, and clozapine, have also been reported to inhibit HERG channels and prolong QT interval in patients using these drugs. However, the interaction between naringenin and antipsychotic drugs on the function of HERG channels has not been studied. Methods: In the present study, we evaluated the effect of combining naringenin with antipsychotics on the function of HERG channels expressed in Xenopus oocytes. Results: When 30 µM naringenin was added to antipsychotic drugs (1 µM haloperidol, 10 µM chlorpromazine, or 10 µM clozapine), significantly greater HERG inhibition was demonstrated, compared to the inhibition caused by antipsychotic drugs alone. Conclusion: The results indicate that an additive interaction occurs between naringenin and antipsychotics. This additive HERG inhibition could pose an increased risk of arrhythmias by decreasing repolarization reserve and possible repolarization heterogeneity.
DOI: 10.6084/m9.figshare.c.3615806_d15.v1
title: Additional file 6: Table S4. of Single-cell analysis of long non-coding RNAs in the developing human neocortex

description: Related to Fig.Â 2a. Expression table of all bulk tissue samples and differentially expressed genes, using polyA data. Expression values are in TPM (Transcripts per Million). (XLS 336 kb)
DOI: 10.60893/figshare.jva.28422671.v1
title: Supplemental material

description: Supplemental material
DOI: 10.15468/dl.ypnprp
title: Occurrence Download

description: A dataset listing the 1952 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is WII Herbarium Dataset"
 ]
}

 The dataset's 1952 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009446-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24570904.v1
title: River red gum restoration thinning trial tree growth dataset

description: Data used in publication "<i>Restoration thinning accelerates small tree growth but slows large tree growth in a multi-age flood-dependent forest"</i>. Data were collected in river red gum forests in Murray Valley National Park, Australia, between 2015 and 2021. Data include diameter at breast height (diameter.mm) for 1980 trees measured to the nearest mm approximately annually (time elapsed between survey dates in decimal years, years.elapsed). For multi-stemmed trees, diameter.mm was calculated by taking square root of the sum of each diameter squared. Data also include information about long-term water availability (site.quality) and short-term water availability (mean annual river flow through the upstream Yarrawonga weir, meanflo). Two-thirds of sites were subject to restoration thinning treatments and the data include the count of trees per hectare prior to thinning (initdensity) and the proportion of initial trees per hectare that were removed by thinning (pthin). Further details are available in the manuscript.
DOI: 10.15468/dl.w2y4jh
title: Occurrence Download

description: A dataset containing 581 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Pegoplata infirma (Meigen, 1826)"
 ]
}

 The dataset includes 581 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009449-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26180/13662383.v3
title: Niche Constructions Generative Art Dataset

description: This is a dataset of 53 line-drawing images, created using an agent-based generative model. The dataset includes a personal aesthetic ranking of each image. For information on how the images were made, please see the paper: McCormack, J. (2010): <i>Enhancing Creativity with Niche Construction </i>in Fellerman, H. et al. (eds), Artificial Life XII, pp. 525-532, MIT Press, Cambridge, MA. (pdf: http://users.monash.edu/~jonmc/research/Papers/Artificial_Life_XII_McCormack.pdf)<br>The nc-images.csv file contains the name of each image and its aesthetic score. The full resolution images are in nc-images.tgz. The catalogue png and jpg images give overviews of each image class.
DOI: 10.6084/m9.figshare.19947881.v1
title: Supplementary Material for: Absent Bodies: Psychotherapeutic Challenges during COVID-19

description: <b><i>Introduction:</i></b> The paper’s main aim is to analyze the theme of psychotherapy which, during the months of lockdown, has undergone a considerable transformation as it moved, in many cases, to the virtual modality. The scarce literature on this subject is divided between those who maintain that the screen establishes a relational distance between the patient and the therapist (disengagement theory) and those who instead consider it an element that stimulates and facilitates communication (stimulation theory). <b><i>Method:</i></b> Utilizing a qualitative and phenomenological interview, which allowed me to collect the testimonies of therapists and patients, I will try to understand if and how the fundamental components of psychotherapy and clinical encounter have changed. <b><i>Results:</i></b> I will describe how the lack of bodily resonance affects psychotherapy and emphasize the centrality of often-underestimated elements such as the atmosphere and setting. <b><i>Conclusion:</i></b> I will finally argue that what is missing is indeed an embodied trust which, in my view, is necessary for a successful therapeutic relationship.
DOI: 10.6084/m9.figshare.13513902.v1
title: Landscape fragmentation of the Natura 2000 network and its surrounding areas

description: The dataset provides metrics on the degree of fragmentation within terrestrial Natura 2000 (N2k) sites and in their surrounding areas (5 km buffer zone around each N2k site). N2k sites can be identified via N2k_SITECODE originally provided by the European Environment Agency [Available at https://ec.europa.eu/environment/nature/natura2000/data/index_en.htm]. Landscape fragmentation is assessed via two metrics, i.e. effective mesh size (MEFF) and effective mesh density (SEFF). Data on MEFF and SEFF for the EU was provided on demand by the European Environment Agency [EEA (2014) Landscape fragmentation data calculated for the landscape fragmentation report by Jaeger et al. (2011)]. The data also includes information on the differences between exterior and interior fragmentation of N2k sites (SEFF_DIFF = SEFF_SURROUNDING – SEFF_WITHIN). Further the degree of fragmentation within and in the surrounding areas of N2k sites is classified in five distinct fragmentation categories, i.e. very low, low, medium, high, very high. The data also includes information on protected area age, i.e. time since first protected (PA_AGE). This information was derived from UNEP-WCMC, Protected Planet Report 2018. The age is given in years, MEFF and SEFF in km². For details see the corresponding research paper Lawrence et al. 2021.<br>