cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4121/13338377.v1
title: Data underlying: REPAiR H2020: T3.1 Spatial Analysis, Wastescapes in the urbanised area of Hamburg (Germany)

description: The dataset consists of a group of shp and sld files corresponding to the layers of the map "AFH18.1 Wastescapes. Analytical Description", which is part of the spatial analysis for the urbanised area of Hamburg. The Wastecapes map is one of the analysis maps used to define the Enabling Context for the Eco-Innovative Solution in transition towards the Circular Economy. The uploaded layers are used in the Geodesign Decision Support Environment during the Per-Urban Living Labs.The data format is ESRI shapefile and the reference system is WGS84 EPSG:4326, SLD files determine the right styling for the map layers.
DOI: 10.4121/13338377
title: Data underlying: REPAiR H2020: T3.1 Spatial Analysis, Wastescapes in the urbanised area of Hamburg (Germany)

description: The dataset consists of a group of shp and sld files corresponding to the layers of the map "AFH18.1 Wastescapes. Analytical Description", which is part of the spatial analysis for the urbanised area of Hamburg. The Wastecapes map is one of the analysis maps used to define the Enabling Context for the Eco-Innovative Solution in transition towards the Circular Economy. The uploaded layers are used in the Geodesign Decision Support Environment during the Per-Urban Living Labs.The data format is ESRI shapefile and the reference system is WGS84 EPSG:4326, SLD files determine the right styling for the map layers.
DOI: 10.4121/13338071
title: Data underlying: REPAiR H2020: T3.1 Spatial Analysis, Wastescapes in Naples Metropolitan Region (Italy)

description: The dataset consists of a group of shp and sld files corresponding to the layers of the map "AFH18.1 Wastescapes. Analytical Description", which is part of the spatial analysis for the Naples Metropolitan Region. The Wastecapes map is one of the analysis maps used to define the Enabling Context for the Eco-Innovative Solution in transition towards the Circular Economy. The uploaded layers are used in the Geodesign Decision Support Environment during the Per-Urban Living Labs.The data format is ESRI shapefile and the reference system is WGS84 EPSG:4326; the technical details are shown in the appropriate file, associated with each geographic file. Style files are provided in relation to each map layer.
DOI: 10.4121/13340984.v1
title: Data Paulissen (2020)

description: The data form the basis for the following study:<br>'Near-bed flow behaviour in scour holes under laterally non-uniform flow conditions'by S.A.J. Paulissen<br><br>The data concern ADV measurements, tuft-measured near-bed flow directions and dye flow visualisation in a flume that replicates a real-life scour situation. The code used to convert video data of tuft movement to flow directions is also provided.<br><br>Abstract available here: http://resolver.tudelft.nl/uuid:834d1f92-5a9d-4327-bdfa-babf236bf53c<br>
DOI: 10.4121/13340984
title: Data underlying the master thesis: Near-bed flow behaviour in scour holes under laterally non-uniform flow conditions

description: The data form the basis for the following study:<br>'Near-bed flow behaviour in scour holes under laterally non-uniform flow conditions'by S.A.J. Paulissen<br><br>The data concern ADV measurements, tuft-measured near-bed flow directions and dye flow visualisation in a flume that replicates a real-life scour situation. The code used to convert video data of tuft movement to flow directions is also provided.<br><br>Abstract available here: http://resolver.tudelft.nl/uuid:834d1f92-5a9d-4327-bdfa-babf236bf53c<br>
DOI: 10.4121/13340984.v2
title: Data underlying the master thesis: Near-bed flow behaviour in scour holes under laterally non-uniform flow conditions

description: The data form the basis for the following study:<br>'Near-bed flow behaviour in scour holes under laterally non-uniform flow conditions'by S.A.J. Paulissen<br><br>The data concern ADV measurements, tuft-measured near-bed flow directions and dye flow visualisation in a flume that replicates a real-life scour situation. The code used to convert video data of tuft movement to flow directions is also provided.<br><br>Abstract available here: http://resolver.tudelft.nl/uuid:834d1f92-5a9d-4327-bdfa-babf236bf53c<br>
DOI: 10.4121/13352363.v1
title: Pb data of Cenozoic deposits inTaiwan

description: Pb isotopic data of K-feldspar from Eocene-Miocene sandstones in Taiwan and its implications for drainage evolution of eastern Asia<br>
DOI: 10.4121/13352363
title: Pb data of Cenozoic deposits inTaiwan

description: Pb isotopic data of K-feldspar from Eocene-Miocene sandstones in Taiwan and its implications for drainage evolution of eastern Asia<br>
DOI: 10.4121/13177010
title: Final data of the online survey underlying the master thesis: What motivates researchers to participate in citizen science projects?

description: This file contains final data of the online survey, that was conducted during the master’s thesis. These results contain the responses from the researchers. This Excel book has four sheets, Raw data- which is the main sheet, that has data of all responses are stored. From raw data, other sheets are made.<br>Distributions - This sheet has the distributions of gender, location, country of responses are identified. <br>Sorting - This sheet has the questions and the sorting responses. <br>Descriptives- This sheet has descriptive responses towards each question.
DOI: 10.4121/13177010.v1
title: Final data of the online survey underlying the master thesis: What motivates researchers to participate in citizen science projects?

description: This file contains final data of the online survey, that was conducted during the master’s thesis. These results contain the responses from the researchers. This Excel book has four sheets, Raw data- which is the main sheet, that has data of all responses are stored. From raw data, other sheets are made.<br>Distributions - This sheet has the distributions of gender, location, country of responses are identified. <br>Sorting - This sheet has the questions and the sorting responses. <br>Descriptives- This sheet has descriptive responses towards each question.
DOI: 10.4121/13109561
title: Data presented in the paper: Does plastic waste kill mangroves? - A field experiment to assess the impact of macro plastics on mangrove growth, stress response and survival.

description: The aim of this dataset was to investigate how plastic waste on the forest floor and in mangrove sediment might affect mangrove trees. We first assessed the size of the current plastic waste problem in mangroves by quantifying the relatively mobile plastic fraction on the forest floor (the percentage of the forest floor covered by plastic, and the number of plastic items per square meter), and by quantifying the more immobile plastic fraction buried in the rhizospheric sediment of eight coastal mangrove fringes (plastic monitoring dataset). We subsequently investigated the effects of a range of plastic cover percentages (0%, 50% and 100%) on root growth, stress response of the tree, and tree survival of 42 mangrove trees in the field over a period of six weeks (plastic suffocation experiment dataset).
DOI: 10.4121/13213610.v1
title: Data resulting from Key Competencies for Design in a Circular Economy: Exploring Gaps in Design Knowledge and Skills for a Circular Economy

description: <b>An excel with the downloaded data gathered from the Qualtrics survey (Design skills for a circular economy) on circular design competencies and the analysis done for each question in the survey.</b><b><br></b><b>The excel contents the questions asked in the survey, whereby seven competencies derived from a previous study Circular Economy Competencies for Design (Sumter et al. 2020) were formulated in laymen terms and we assessed how often the competencies were used (Use Frequency) and how much expertise the respondents had in the competencies (Self-Reported Expertise). Additionally we asked the respondents some background questions (e.g., Employment status, Work Focus, Type of Organisation they worked in, Job title and Educational Background). </b><br><b> </b><br>
DOI: 10.4121/13213610.v2
title: Data resulting from Key Competencies for Design in a Circular Economy: Exploring Gaps in Design Knowledge and Skills for a Circular Economy

description: <b>An excel with the downloaded data gathered from the Qualtrics survey (Design skills for a circular economy) on circular design competencies and the analysis done for each question in the survey.</b><b><br></b><b>The excel contents the questions asked in the survey, whereby seven competencies derived from a previous study Circular Economy Competencies for Design (Sumter et al. 2020) were formulated in laymen terms and we assessed how often the competencies were used (Use Frequency) and how much expertise the respondents had in the competencies (Self-Reported Expertise). Additionally we asked the respondents some background questions (e.g., Employment status, Work Focus, Type of Organisation they worked in, Job title and Educational Background). </b><br><b> </b><br>
DOI: 10.4121/13213610
title: Data resulting from Key Competencies for Design in a Circular Economy: Exploring Gaps in Design Knowledge and Skills for a Circular Economy

description: <b>An excel with the downloaded data gathered from the Qualtrics survey (Design skills for a circular economy) on circular design competencies and the analysis done for each question in the survey.</b><b><br></b><b>The excel contents the questions asked in the survey, whereby seven competencies derived from a previous study Circular Economy Competencies for Design (Sumter et al. 2020) were formulated in laymen terms and we assessed how often the competencies were used (Use Frequency) and how much expertise the respondents had in the competencies (Self-Reported Expertise). Additionally we asked the respondents some background questions (e.g., Employment status, Work Focus, Type of Organisation they worked in, Job title and Educational Background). </b><br><b> </b><br>
DOI: 10.4121/12917615.v1
title: Post-processed video files of simulations in Delft3D of multiple turbidity currents (included as part of phase C Equinor-TU Delft contract)

description: Files of post-processed videos of Delft3D simulations of consecutive submarine 3D low-density turbidity currents. Turbidity currents are completely confined in a submarine canyon and become unconfined at the canyon slope break. Model dimensions are at natural scale (kilometre scale).<br>Two groups are set up with medium- and fine- grained sediment each. Three scenarios are also configured with no extra fine sediment, extra fine sediment in the water column and extra fine sediment on the seabed.
DOI: 10.4121/12917615
title: Post-processed video files of simulations in Delft3D of multiple turbidity currents (included as part of phase C Equinor-TU Delft contract)

description: Files of post-processed videos of Delft3D simulations of consecutive submarine 3D low-density turbidity currents. Turbidity currents are completely confined in a submarine canyon and become unconfined at the canyon slope break. Model dimensions are at natural scale (kilometre scale).<br>Two groups are set up with medium- and fine- grained sediment each. Three scenarios are also configured with no extra fine sediment, extra fine sediment in the water column and extra fine sediment on the seabed.
DOI: 10.4121/13270436.v1
title: Reliability test for Siemens NX, StarCCM+, and Heeds for mixing geometry optimization

description: Reliability.zip contains the heeds file were the reliability check is done, with al necessary files. Also, reliability_test_NX_StarCCM_Heeds.xlsx is included. Here the reliability calculation is performed by substracting the results from test_1 from test_2 resulting 0. Stating reliability<br>
DOI: 10.4121/13270436
title: Reliability test for Siemens NX, StarCCM+, and Heeds for mixing geometry optimization

description: Reliability.zip contains the heeds file were the reliability check is done, with al necessary files. Also, reliability_test_NX_StarCCM_Heeds.xlsx is included. Here the reliability calculation is performed by substracting the results from test_1 from test_2 resulting 0. Stating reliability<br>
DOI: 10.4121/13270415.v1
title: How to use an alternative geometrical design, to be optimized for better microfluidic mixing

description: The zip files contains the data to optimize a new mixer geometry using Siemens NX, StarCCM+ , and Heeds.For the last three software packages videos are attached to show how this is done.<br>
DOI: 10.4121/13270415
title: How to use an alternative geometrical design, to be optimized for better microfluidic mixing

description: The zip files contains the data to optimize a new mixer geometry using Siemens NX, StarCCM+ , and Heeds.For the last three software packages videos are attached to show how this is done.<br>
DOI: 10.4121/13270340.v1
title: Videos of a short overview of the optimization results in the process to the best mixer. For three types of mixers

description: An overview of geometry of the mixer during optimizing for the best results: wall, herringbone, and sloped. When no geometry is visible (mostly herringbone) themixing geometry is lower than the position of the visualization plane<br>
DOI: 10.4121/13270340
title: Videos of a short overview of the optimization results in the process to the best mixer. For three types of mixers

description: An overview of geometry of the mixer during optimizing for the best results: wall, herringbone, and sloped. When no geometry is visible (mostly herringbone) themixing geometry is lower than the position of the visualization plane<br>
DOI: 10.4121/13270262.v1
title: Datasets for microfluidic mixing optimization of three types of microfluidic mixing chambers

description: Three datasets, containing, the optimization setup used for the results. These datasets use Siemens NX, StarCCM+, and Heeds. These datasets contain only 20 runs instead of 1000 due to size. The results of these optimization results are in the concerning csv file with the same name as the zip-file. herringbone.csv, sloping.csv, and wall.csv<br>
DOI: 10.4121/13270262
title: Datasets for microfluidic mixing optimization of three types of microfluidic mixing chambers

description: Three datasets, containing, the optimization setup used for the results. These datasets use Siemens NX, StarCCM+, and Heeds. These datasets contain only 20 runs instead of 1000 due to size. The results of these optimization results are in the concerning csv file with the same name as the zip-file. herringbone.csv, sloping.csv, and wall.csv<br>
DOI: 10.4121/13270352.v1
title: Videos of passive scalar distribution of the three best optimized microfluidic mixing chambers compared with a reference, with mixing time 120 [s]

description: Overview of four mixers in three situations, visualization planes at 50 um, and 400 um of the bottom plane. And a cylindrical visualization surface at radius 1200 um. <br>herringbone_50u, herringbone_400u, herringbone_r1200uref_50u, ref_400u, ref _r1200usloping_50u, sloping_400u, sloping_r1200uwall_50u, wall_400u, wall_r1200u<br>
DOI: 10.4121/13270352
title: Videos of passive scalar distribution of the three best optimized microfluidic mixing chambers compared with a reference, with mixing time 120 [s]

description: Overview of four mixers in three situations, visualization planes at 50 um, and 400 um of the bottom plane. And a cylindrical visualization surface at radius 1200 um. <br>herringbone_50u, herringbone_400u, herringbone_r1200uref_50u, ref_400u, ref _r1200usloping_50u, sloping_400u, sloping_r1200uwall_50u, wall_400u, wall_r1200u<br>
DOI: 10.4121/13250774.v1
title: Data underlying the research of AIMD simulations on proton conduction mechanism in hydrous olivine

description: The AIMD simulations files for different hydrous olivine models with different water content and Fe content.
DOI: 10.4121/13250774
title: Data underlying the research of AIMD simulations on proton conduction mechanism in hydrous olivine

description: The AIMD simulations files for different hydrous olivine models with different water content and Fe content.
DOI: 10.4121/13194518.v1
title: Data underlying research on expression of heterologous molybdenum-cofactor-biosynthesis and nitrate-assimilation genes enables nitrate utilization by Saccharomyces cerevisiae

description: Metabolic capabilities of cells are not only defined by their repertoire of enzymes and metabolites, but also by availability of enzyme cofactors. The molybdenum cofactor (Moco) is widespread among eukaryotes but absent from the industrial yeast <i>Saccharomyces</i> <i>cerevisiae</i>. In this study, we identified 7 Moco biosynthesis genes in the non-conventional yeast <i>Ogataea parapolymorpha</i> by <i>Spy</i>cas9-mediated mutational analysis and expressed them in <i>S. cerevisiae</i>. Functionality of the heterologously expressed<i> </i>Moco biosynthesis pathway in <i>S. cerevisiae</i> was assessed by co-expressing <i>O. parapolymorpha </i>nitrate-assimilation enzymes, including the Moco-dependent nitrate reductase. Following two-weeks of incubation, growth of the engineered <i>S. cerevisiae</i> was observed on nitrate as sole nitrogen source. Relative to the engineered, evolved nitrate-assimilating <i>S. cerevisiae</i> strains isolated from these cultures showed increased copy numbers of the heterologous genes, increased levels of the encoded proteins and a 5-fold higher nitrate-reductase activity in cell extracts. Growth at nM molybdate concentrations was enabled by co-expression of a <i>Chlamydomonas reinhardtii</i> high-affinity molybdate transporter. In serial batch cultures on nitrate-containing medium, a non-engineered <i>S. cerevisiae</i> was rapidly outcompeted by the spoilage yeast <i>Brettanomyces bruxellensis. </i>In contrast, an engineered and evolved nitrate-assimilating <i>S. cerevisiae</i> strains persisted during 35 generations of co-cultivation. This result indicates that the ability of engineered strains to use nitrate may be applicable to improve competitiveness industrial processes upon contamination with spoilage yeasts. Since over 50 Moco-dependent enzymes have been described, introduction of a functional Moco synthesis pathway offers interesting options to further broaden the biocatalytic repertoire of <i>S. cerevisiae</i>.
DOI: 10.4121/13194518
title: Data underlying research on expression of heterologous molybdenum-cofactor-biosynthesis and nitrate-assimilation genes enables nitrate utilization by Saccharomyces cerevisiae

description: Metabolic capabilities of cells are not only defined by their repertoire of enzymes and metabolites, but also by availability of enzyme cofactors. The molybdenum cofactor (Moco) is widespread among eukaryotes but absent from the industrial yeast <i>Saccharomyces</i> <i>cerevisiae</i>. In this study, we identified 7 Moco biosynthesis genes in the non-conventional yeast <i>Ogataea parapolymorpha</i> by <i>Spy</i>cas9-mediated mutational analysis and expressed them in <i>S. cerevisiae</i>. Functionality of the heterologously expressed<i> </i>Moco biosynthesis pathway in <i>S. cerevisiae</i> was assessed by co-expressing <i>O. parapolymorpha </i>nitrate-assimilation enzymes, including the Moco-dependent nitrate reductase. Following two-weeks of incubation, growth of the engineered <i>S. cerevisiae</i> was observed on nitrate as sole nitrogen source. Relative to the engineered, evolved nitrate-assimilating <i>S. cerevisiae</i> strains isolated from these cultures showed increased copy numbers of the heterologous genes, increased levels of the encoded proteins and a 5-fold higher nitrate-reductase activity in cell extracts. Growth at nM molybdate concentrations was enabled by co-expression of a <i>Chlamydomonas reinhardtii</i> high-affinity molybdate transporter. In serial batch cultures on nitrate-containing medium, a non-engineered <i>S. cerevisiae</i> was rapidly outcompeted by the spoilage yeast <i>Brettanomyces bruxellensis. </i>In contrast, an engineered and evolved nitrate-assimilating <i>S. cerevisiae</i> strains persisted during 35 generations of co-cultivation. This result indicates that the ability of engineered strains to use nitrate may be applicable to improve competitiveness industrial processes upon contamination with spoilage yeasts. Since over 50 Moco-dependent enzymes have been described, introduction of a functional Moco synthesis pathway offers interesting options to further broaden the biocatalytic repertoire of <i>S. cerevisiae</i>.
DOI: 10.4121/13090007.v1
title: Electrosurgical knife integrated with an optical tissue read-out system

description: Electrosurgical knife integrated with optical fibers of a diffused reflectance spectroscopy system was developed for tissue read-out during electrosurgery. Dataset includes optical microscopy and SEM images and EDX measurement from optical fibers which were used closed to the blade of electrosurgical knife during cutting porcine tissue. The images show the structural change of the optical fiber and debris attachment to the tip after electrosurgery.
DOI: 10.4121/13090007
title: Electrosurgical knife integrated with an optical tissue read-out system

description: Electrosurgical knife integrated with optical fibers of a diffused reflectance spectroscopy system was developed for tissue read-out during electrosurgery. Dataset includes optical microscopy and SEM images and EDX measurement from optical fibers which were used closed to the blade of electrosurgical knife during cutting porcine tissue. The images show the structural change of the optical fiber and debris attachment to the tip after electrosurgery.
DOI: 10.4121/12942932
title: Supplementary data that support the findings of "Information driven structured illumination microscopy using noise-controlled image reconstructions"

description: Supplementary data that support the findings of "Information driven structured illumination microscopy using noise-controlled image reconstructions"
DOI: 10.4121/12973034.v1
title: Data underlying the publication: Empowering through reflection: participatory design of change in agricultural chains in Indonesia by local stakeholders

description: There are two types of data: 1) report of workshops; and 2) Transcripts of interviews. <br>The workshops are the co-creation workshops with agricultural supply chain actors in a horticultural production centre In Indonesia, in Bandung District, West Java. The purpose of the workshops are to empower the actors (farmers and wholesalers) to improve their understanding of their own and other situations, in order to improve their understanding of their common situations and (together) to find ways to deal with their situations.<br>The interviews are interviews with experts from Indonesia to obtain general information of agricultural production and supply chains in Indonesia. <br><br>
DOI: 10.4121/12973034
title: Data underlying the publication: Empowering through reflection: participatory design of change in agricultural chains in Indonesia by local stakeholders

description: There are two types of data: 1) report of workshops; and 2) Transcripts of interviews. <br>The workshops are the co-creation workshops with agricultural supply chain actors in a horticultural production centre In Indonesia, in Bandung District, West Java. The purpose of the workshops are to empower the actors (farmers and wholesalers) to improve their understanding of their own and other situations, in order to improve their understanding of their common situations and (together) to find ways to deal with their situations.<br>The interviews are interviews with experts from Indonesia to obtain general information of agricultural production and supply chains in Indonesia. <br><br>