cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30736668
title: Additional file 11 of Metabolic modeling of microbial communities in the chicken ceca reveals a landscape of competition and co-operation

description: Supplementary Material 11. Supplementary Table 5. Detailed characteristics and classification of the 237 reconstructed MAGs. This table provides details on all metagenome-assembled genomes (MAGs) reconstructed from 33 chicken cecal samples. The table includes quality metrics (completeness, contamination, N50) for each MAG along with taxonomic classification, abundance data, and sample category (HB: High Bacteroides; NB: No Bacteroides). The"binID used for metabolic reconstruction"column indicates which specific MAG was used to create the metabolic model for each species. Our naming convention reflects the assembly strategy used: i. SpecieName_pooled: For most species present across multiple samples, reads were pooled from all samples where the species was detected, reassembled, and binned to generate a single high-quality MAG. ii. Ecoli_cluster1 through Ecoli_cluster5: Due to E. coli's high prevalence (23 samples) and strain heterogeneity, we clustered the original E. coli bins into 5 groups based on average nucleotide identity (ANI). For each cluster, reads were pooled from samples within that cluster to generate 5 distinct strain-specific MAGs. Each E. coli strain model was only included in community models for samples belonging to that specific cluster. iii. Sample_SpecieName: For species unique to a single sample, MAGs were derived directly from individual sample assemblies. iv. SpecieName_coassembly: Five species (Bacteroides fragilis, Anaerostipes butyraticus, Alistipes excrementavium, Limihabitans stercoravium, and Caccovivens sp944345705) yielded higher quality MAGs from co-assembly of all 33 samples rather than from pooled reads.
DOI: 10.6084/m9.figshare.30736668.v1
title: Additional file 11 of Metabolic modeling of microbial communities in the chicken ceca reveals a landscape of competition and co-operation

description: Supplementary Material 11. Supplementary Table 5. Detailed characteristics and classification of the 237 reconstructed MAGs. This table provides details on all metagenome-assembled genomes (MAGs) reconstructed from 33 chicken cecal samples. The table includes quality metrics (completeness, contamination, N50) for each MAG along with taxonomic classification, abundance data, and sample category (HB: High Bacteroides; NB: No Bacteroides). The"binID used for metabolic reconstruction"column indicates which specific MAG was used to create the metabolic model for each species. Our naming convention reflects the assembly strategy used: i. SpecieName_pooled: For most species present across multiple samples, reads were pooled from all samples where the species was detected, reassembled, and binned to generate a single high-quality MAG. ii. Ecoli_cluster1 through Ecoli_cluster5: Due to E. coli's high prevalence (23 samples) and strain heterogeneity, we clustered the original E. coli bins into 5 groups based on average nucleotide identity (ANI). For each cluster, reads were pooled from samples within that cluster to generate 5 distinct strain-specific MAGs. Each E. coli strain model was only included in community models for samples belonging to that specific cluster. iii. Sample_SpecieName: For species unique to a single sample, MAGs were derived directly from individual sample assemblies. iv. SpecieName_coassembly: Five species (Bacteroides fragilis, Anaerostipes butyraticus, Alistipes excrementavium, Limihabitans stercoravium, and Caccovivens sp944345705) yielded higher quality MAGs from co-assembly of all 33 samples rather than from pooled reads.
DOI: 10.6084/m9.figshare.30736671
title: Additional file 12 of Metabolic modeling of microbial communities in the chicken ceca reveals a landscape of competition and co-operation

description: Supplementary Material 12. Supplementary Table 6. Sequencing statistics of the 33 raw metagenomic DNA datasets used in this study. The table includes sample identifiers, total number of reads, total number of bases (i.e., dataset size), minimum, average, and maximum read lengths.
DOI: 10.6084/m9.figshare.30736671.v1
title: Additional file 12 of Metabolic modeling of microbial communities in the chicken ceca reveals a landscape of competition and co-operation

description: Supplementary Material 12. Supplementary Table 6. Sequencing statistics of the 33 raw metagenomic DNA datasets used in this study. The table includes sample identifiers, total number of reads, total number of bases (i.e., dataset size), minimum, average, and maximum read lengths.
DOI: 10.6084/m9.figshare.30736710
title: Additional file 1 of Serum level of interleukin-11 in patients with rheumatoid arthritis; relation to disease activity and interstitial lung disease

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.30736710.v1
title: Additional file 1 of Serum level of interleukin-11 in patients with rheumatoid arthritis; relation to disease activity and interstitial lung disease

description: Supplementary Material 1.
DOI: 10.15468/dl.sppx7f
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sceloporus druckercolini"
 ]
}

 The dataset includes 30 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013256-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30736733
title: Additional file 2 of Contrastive learning-based multi-mechanism disentangled assessment for drug-drug interaction

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30736733.v1
title: Additional file 2 of Contrastive learning-based multi-mechanism disentangled assessment for drug-drug interaction

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30736743
title: Additional file 1 of Spatiotemporal variability and tectonic implications of very low-frequency earthquakes in the southwestern Ryukyu Trench

description: Additional file 1: Table S1. Description of data: List of used templates.
DOI: 10.6084/m9.figshare.30736743.v1
title: Additional file 1 of Spatiotemporal variability and tectonic implications of very low-frequency earthquakes in the southwestern Ryukyu Trench

description: Additional file 1: Table S1. Description of data: List of used templates.
DOI: 10.5281/zenodo.17745084
title: Data of breast cancer project
DOI: 10.6084/m9.figshare.30736746
title: Additional file 2 of Spatiotemporal variability and tectonic implications of very low-frequency earthquakes in the southwestern Ryukyu Trench

description: Additional file 2: Table S2. Description of data: List of VLFEs in the B-catalog (origin time in UT).
DOI: 10.6084/m9.figshare.30736746.v1
title: Additional file 2 of Spatiotemporal variability and tectonic implications of very low-frequency earthquakes in the southwestern Ryukyu Trench

description: Additional file 2: Table S2. Description of data: List of VLFEs in the B-catalog (origin time in UT).
DOI: 10.6084/m9.figshare.30736749
title: Additional file 3 of Spatiotemporal variability and tectonic implications of very low-frequency earthquakes in the southwestern Ryukyu Trench

description: Additional file 3: Table S3. Description of data: List of VLFEs in the FB-catalog　(origin time in UT).
DOI: 10.6084/m9.figshare.30736749.v1
title: Additional file 3 of Spatiotemporal variability and tectonic implications of very low-frequency earthquakes in the southwestern Ryukyu Trench

description: Additional file 3: Table S3. Description of data: List of VLFEs in the FB-catalog　(origin time in UT).
DOI: 10.6084/m9.figshare.30736752
title: Additional file 4 of Spatiotemporal variability and tectonic implications of very low-frequency earthquakes in the southwestern Ryukyu Trench

description: Additional file 4: Table S4. Description of data: Fault parameters used in Coulomb stress change calculations.
DOI: 10.6084/m9.figshare.30736752.v1
title: Additional file 4 of Spatiotemporal variability and tectonic implications of very low-frequency earthquakes in the southwestern Ryukyu Trench

description: Additional file 4: Table S4. Description of data: Fault parameters used in Coulomb stress change calculations.
DOI: 10.6084/m9.figshare.30736754
title: Additional file 2 of Development and validation of an ultrasound-based AI-radiomics model for diagnosing and risk-stratifying gastrointestional stromal tumors: a retrospective diagnostic study

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30736754.v1
title: Additional file 2 of Development and validation of an ultrasound-based AI-radiomics model for diagnosing and risk-stratifying gastrointestional stromal tumors: a retrospective diagnostic study

description: Supplementary Material 2
DOI: 10.5281/zenodo.17745083
title: Data of breast cancer project
DOI: 10.6084/m9.figshare.30736781
title: Additional file 1 of Ecogenomics and functional biogeography of the Roseobacter group in the global oceans based on 653 MAGs and SAGs

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.30736781.v1
title: Additional file 1 of Ecogenomics and functional biogeography of the Roseobacter group in the global oceans based on 653 MAGs and SAGs

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.30736799
title: Additional file 3 of Natural variability of trace-amine associated receptors in wild meerkats

description: Additional file3
DOI: 10.6084/m9.figshare.30736799.v1
title: Additional file 3 of Natural variability of trace-amine associated receptors in wild meerkats

description: Additional file3
DOI: 10.6084/m9.figshare.30736826
title: Additional file 1 of Adverse childhood experiences, emotion regulation and subjective happiness among young adults

description: Supplementary material 1.
DOI: 10.6084/m9.figshare.30736826.v1
title: Additional file 1 of Adverse childhood experiences, emotion regulation and subjective happiness among young adults

description: Supplementary material 1.
DOI: 10.15468/dl.mvjtqu
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ixora finlaysoniana"
 ]
}

 The dataset includes 43 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013257-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xnwtg9
title: Occurrence Download

description: A dataset containing 475712 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyclarhis gujanensis",
 "HasCoordinate is true"
 ]
}

 The dataset includes 475712 records from 333 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013236-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wr4b7c
title: Occurrence Download

description: A dataset containing 3084 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sceloporus formosus"
 ]
}

 The dataset includes 3084 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013258-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.daarex
title: Occurrence Download

description: A dataset containing 180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Jacaranda mimosifolia"
 ]
}

 The dataset includes 180 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013259-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/cxaasm
title: Engineering-Grade High-Fidelity Five-Level Fine-Grained Knowledge Graph for Structured Intelligence Analysis Technology

description: This dataset presents an engineering-grade, high-fidelity, near-lossless five-layer knowledge graph for structured intelligence analysis, designed to support visualization in text mining, knowledge engineering, and intelligence analysis methodologies. The graph employs a multi-level hierarchical structure from documents to atomic units, with node types including document, chapter, section, paragraph, sentence, keyword, figure, table, and data_point. All nodes are linked through explicit parent-child relationships. At the content level, the dataset preserves the semantic and pagination information of the original PDFs to the greatest extent possible: mixed Chinese-English text is segmented into sentences, sentence-level keywords are extracted, and page numbers are annotated for each node. Figure nodes store captions, surrounding explanatory text, and page-level bounding box (bbox) metadata, enabling precise localization and supporting future multimodal expansion. Table nodes are expanded into cell-level records, combining row/column indices, row/column headers, and original cell text to provide a fine-grained, structured representation of tabular information. Crucially, this resource achieves engineering-grade fidelity and near-lossless preservation: within the constraints of automated PDF parsing, it requires no manual table-by-table correction or image OCR, striving to retain the original text, graphics, and tables' structure and semantics to the greatest extent possible. This knowledge graph can be utilized to construct method-level ontologies for structured analysis techniques, develop retrieval systems based on GraphRAG or vector models, train or evaluate domain-specific language models, and serve as a foundation for teaching and research in multi-level text annotation, logical structure analysis, and table data visualization.
DOI: 10.15468/dl.gkdhcw
title: Occurrence Download

description: A dataset containing 6668 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is Europe",
 "TaxonKey is Potamogeton pusillus"
 ]
}

 The dataset includes 6668 records from 180 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013260-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17605/osf.io/y9k5u
title: Collaborative Action Research with Diverse Stakeholders: Building the Disability Champions Mentoring Network.

description: In this project, we completed a self-evaluation and qualitative analysis of the intent and process used in the development of a community action network, highlighting a research process and collaborative, inclusive project. We sought to expand self-advocacy building in the community and more closely connect adult supports to the P-12 schooling process with a culturally and linguistically diverse group of self-advocate mentors, families, educators, and community members as engaged collaborators.
DOI: 10.17605/osf.io/nx8bu
title: Evaluation of Managerial Processes Applied in Multinational Special Education Institutions

description: Managerial Processes Applied in Special Education Institutions
DOI: 10.15468/dl.r6fcgz
title: Occurrence Download

description: A dataset containing 387 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Jacaratia mexicana"
 ]
}

 The dataset includes 387 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013262-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dn8aay
title: Occurrence Download

description: A dataset containing 15190 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Occurrence evidence, Living Specimen, Specimen)",
 "Continent is Asia",
 "Country is Indonesia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mammalia",
 "Year 2015-2025"
 ]
}

 The dataset includes 15190 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013261-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13903509
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.da6bv4
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Jacquemontia havanensis"
 ]
}

 The dataset includes 55 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013264-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nze2as
title: Occurrence Download

description: A dataset containing 25764 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sceloporus grammicus"
 ]
}

 The dataset includes 25764 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013263-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/h9m5-8607
title: NBDL-HK3T1ZWKNNE2RG
DOI: 10.25919/0dqf-zr90
title: NBDL-HK48NMJFMSB6YF
DOI: 10.25919/b5hs-pj14
title: NBDL-HK4A8AFENAH630
DOI: 10.25919/ws8v-0433
title: NBDL-HK3T5NR3GR7Q0A
DOI: 10.25919/q2zq-pp44
title: NBDL-HK3SZKX5MDBZEW
DOI: 10.25919/5w5a-sv61
title: NBDL-HK3SZKXJJD8TH8
DOI: 10.25919/xy04-p852
title: NBDL-HK4B09G2MDST4V
DOI: 10.25919/zgdx-vc65
title: NBDL-HK3T5NRPPR6S2P
DOI: 10.25919/0d0q-v433
title: NBDL-HK4B09J7QDWN1J
DOI: 10.25919/eemq-tn60
title: NBDL-HK4AMQXQKC8AQE
DOI: 10.25919/80z2-x749
title: NBDL-HK4B09HGGE6QS3
DOI: 10.25919/jhra-f949
title: NBDL-HK4A8ADWMAYSKD
DOI: 10.25919/ckpg-bb51
title: NBDL-HK48NMJ1GS8WS7
DOI: 10.25919/8r25-y885
title: NBDL-HK48NMHQNSCVK2
DOI: 10.25919/xf71-aj77
title: NBDL-HK3SZKW1MD9RMC
DOI: 10.25919/bx6a-4s21
title: NBDL-HK4B09GBPDS57F
DOI: 10.25919/atts-ed26
title: NBDL-HK3SZKVGNDRBBZ
DOI: 10.5281/zenodo.17745149
title: Fortified Theoretical Framework: The Quark-Gluon Plasma (QGP) -- A Rigorous Multi-Scale Analysis with Bayesian Constraints, Sensitivity Quantification, and Verifiable Simulations

description: This fortified theoretical framework presents a mathematically rigorous, empirically calibrated, and computationally verifiable exposition of the quark-gluon plasma (QGP). It represents the deconfined phase of quantum chromodynamics (QCD) matter under extremal thermodynamic conditions. Anchored in the non-perturbative dynamics of the QCD Lagrangian, we delineate color deconfinement through the Polyakov loop order parameter. We also address asymptotic freedom via renormalization-group flow of the strong coupling \( \alpha_s \).Critical parameters of the QCD phase diagram are constrained by state-of-the-art lattice QCD simulations. These yield a pseudocritical temperature \( T_c = 156.5 \pm 1.5\,\mathrm{MeV} \) and energy density \( \epsilon_c \approx 0.86\,\mathrm{GeV/fm^3} \) at vanishing baryon chemical potential \( \mu_B = 0 \).Experimental signatures from RHIC and LHC heavy-ion collisions are dissected using relativistic viscous hydrodynamics. This includes hard probes such as jet quenching (parameterized by the transport coefficient \( \hat{q} \sim 1.5\,\mathrm{GeV^2/fm} \)) and sequential quarkonium suppression. It also covers soft observables like anisotropic flow \( v_2\{2\} \approx 0.12{-}0.15 \).Transport coefficients, particularly the shear viscosity-to-entropy ratio \( \eta/s = (0.20 \pm 0.05)/(4\pi) \), are delineated via Bayesian inference on global datasets. Priors incorporate AdS/CFT holography and lattice susceptibilities.Multi-scale implications extend from primordial cosmology to neutron star phenomenology. In cosmology, QGP dominance occurs for proper times \( \tau \lesssim 10\,\mu\mathrm{s} \) post-Big Bang. This imprints the observed baryon asymmetry \( \eta_B \sim 6 \times 10^{-10} \). In neutron stars, hybrid equations of state support maximum masses \( M_\text{max} \approx 2.1\,M_\odot \).Theoretical robustness is reinforced by global Sobol sensitivity analysis. This highlights \( \eta/s \) dominance with first-order index \( S_{\eta/s} = 0.45 \). Advanced Monte Carlo simulations reproduce \( v_2 = 0.147 \pm 0.050 \). Integration includes emergent phenomena such as vortical and magnetic components in the QGP.Methodological challenges are rigorously quantified. These include initial-state anisotropies (\( \Delta \epsilon_2 \sim 20\% \)), non-equilibrium pre-thermalization (\( \tau_\text{iso} \sim 0.5\,\mathrm{fm}/c \)), and the elusive critical endpoint. Limitations from finite-lattice systematics and probe biases are also addressed.This self-consistent framework is verifiable through the provided Python implementations. It establishes a fortified benchmark for QCD phenomenology.
DOI: 10.25919/gwr1-4s74
title: NBDL-HK3T5NSGJR7FDY
DOI: 10.25919/6yfg-f640
title: NBDL-HK3T5NQENQ1MH5
DOI: 10.25919/wzv0-d791
title: NBDL-HK3T892JMM8MFA
DOI: 10.25919/8bct-w583
title: NBDL-HK3SXDVTM2NV00
DOI: 10.25919/9b2v-cy72
title: NBDL-HK48NMGBNSEFPJ
DOI: 10.25919/t2pk-q291
title: NBDL-HK3SZKXCPDBA90
DOI: 10.25919/m40e-nr58
title: NBDL-HK48NMHTKSFASE
DOI: 10.25919/qhy2-c365
title: NBDL-HK3T5NSBGR4XBA
DOI: 10.25919/1ddd-9s49
title: NBDL-HK3SXDW3H376GB
DOI: 10.25919/42c6-2928
title: NBDL-HXDQPBACQQ5ERV
DOI: 10.25919/t76y-z085
title: NBDL-HK3SZKTSKDV7DB
DOI: 10.25919/aee0-7766
title: NBDL-HK4A8AE3KAKF6C
DOI: 10.25919/1fqd-yd28
title: NBDL-HK3SXDXHN32NYK
DOI: 10.25919/hpcv-1y63
title: NBDL-HK4B09G4GDS4TK
DOI: 10.25919/xdqb-rc68
title: NBDL-HK4AMQYWGCMPC7
DOI: 10.25919/xeg7-bj95
title: NBDL-HK4A8AFBKAHE7C
DOI: 10.25919/zkwz-qf96
title: NBDL-HK3SZKTYHDV25Q
DOI: 10.25919/fvm9-dq44
title: NBDL-HK3SXDXJK32GHZ
DOI: 10.25919/0ssg-me33
title: NBDL-HK4A8ADBJAYD09
DOI: 10.25919/5kd2-ys22
title: NBDL-HK3SZKVKQDSGGK
DOI: 10.25919/qdxr-gz28
title: NBDL-HK3T5NRCJR63KE
DOI: 10.25919/xzjs-fh92
title: NBDL-HK3SZKXKGD8V34
DOI: 10.25919/d7dg-9a79
title: NBDL-HK3SXDXGQ32KC7
DOI: 10.15468/dl.8t2yru
title: Occurrence Download

description: A dataset containing 185 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sceloporus heterolepis"
 ]
}

 The dataset includes 185 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013265-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.