cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.8v5bdx
title: Occurrence Download

description: A dataset containing 184 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyprinodon eremus Miller & Fuiman, 1987",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 184 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002688-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kar83y
title: Occurrence Download

description: A dataset containing 167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyclura carinata Harlan, 1824",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 167 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002648-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.acn7zb
title: Occurrence Download

description: A dataset containing 489 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyprinella gibbsi (Howell & Williams, 1971)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 489 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002678-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.em8myv
title: Occurrence Download

description: A dataset containing 213 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cynopterus horsfieldii Gray, 1843",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 213 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002674-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4afzp
title: Occurrence Download

description: A dataset containing 52584 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyprinella lutrensis (Baird & Girard, 1853)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 52584 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002679-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mj5pg2
title: Occurrence Download

description: A dataset containing 829 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyprinodon nevadensis Eigenmann & Eigenmann, 1889",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 829 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002689-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pp5acq
title: Occurrence Download

description: A dataset containing 10230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cynomys ludovicianus (Ord, 1815)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 10230 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002668-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tbhr7u
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ovis aries",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014996-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4dy8r9
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cycas panzhihuaensis L.Zhou & S.Y.Yang",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 41 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002647-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wpase7
title: Occurrence Download

description: A dataset containing 429925 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cytisus scoparius (L.) Link",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 429925 records from 2365 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002694-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zhdefw
title: Occurrence Download

description: A dataset containing 5354 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-13.29719 12.40449,-13.22008 10.0165,-11.78756 10.06701,-10.81197 10.02381,-10.37792 10.23303,-10.42201 12.40934,-13.29719 12.40449))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 5354 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000649-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ekgv7d
title: Occurrence Download

description: A dataset containing 5354 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-13.29719 12.40449,-13.22008 10.0165,-11.78756 10.06701,-10.81197 10.02381,-10.37792 10.23303,-10.42201 12.40934,-13.29719 12.40449))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 5354 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000650-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zzkxtu
title: Occurrence Download

description: A dataset containing 526507 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ochlodes sylvanus (Esper, 1777), Oeneis ammon Elwes, 1899, Oeneis bore Esper, 1790, Oeneis glacialis Schrank, 1783, Oeneis jutta Hübner, 1806, Oeneis magna Graeser, 1888, Oeneis melissa (Fabricius, 1775), Oeneis norna Thunberg, 1791, Oeneis polixenes Fabricius, 1775, Oeneis tarpeia Pallas, 1771)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "DecimalLatitude is greater than 0",
 "DecimalLatitude is less than 75",
 "DecimalLongitude is greater than -50",
 "DecimalLongitude is less than 50",
 "CoordinateUncertaintyInMeters is less than 5000",
 "Year is greater than or equal to 1990",
 "Year is less than or equal to 2015"
 ]
}

 The dataset includes 526507 records from 558 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000640-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/7xfv-rg07
title: ICARUS Chamber Experiment: UCR-CECERT-APL-Cocker Group_20161220_SOA surrogate/NOx/H2O2/M-XYLENE_Hydroxyl radical_No Seed_EPA2291A - Weihan

description: Goals: Observing OH-initiated m-xylene reactions under SOA surrogate and NOx environment.Summary: Target: 1.1 ppmC SOA surrogate, 25 ppb NOx, 1 ppm H2O2, 25 ppb m-xylene (A) INSTRUMENTS: SMPS, GC1, AMS, VTDMA, HTDMA, APMOrganization: UCR-CECERT-APL-Cocker Group Lab Affiliation: University of California, Riverside, CE-CERT Chamber: EPA chamberExperiment Category: Photolysis, any phase Oxidant: Hydroxyl radical Reactants: SOA surrogate, NOx, H2O2, m-xylene Reaction Type: Photooxidation Relative Humidity: 0.01 Temperature: 28 Pressure: 0.015'' H2O
DOI: 10.15468/dl.9mazfc
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erigeron karvinskianus",
 "Country is Nepal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 123 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080258-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17617/3.tus70h
title: Ego4View-Syn

description: Ego4View-Syn is a large-scale synthetic dataset for egocentric 3D human pose estimation.
DOI: 10.7910/dvn/2m8hpt
title: Replication Data for: How Labor Market Institutions Influence The Relationship Between Exchange Rate Regimes and Economic Growth

description: Replication dataset for Kuokštis, Asali, Spurga, "How Labor Market Institutions Influence The Relationship Between Exchange Rate Regimes and Economic Growth"
description: This work was supported by the Lithuanian Research Council under Grant [agreement No S-MIP-22-20].
DOI: 10.15468/dl.xbvxsg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Annona squamosa",
 "Country is Kiribati",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080259-250717081556266/datasets/export for details.
DOI: 10.15468/dl.tzj8sa
title: Occurrence Download

description: A dataset containing 35085 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cerastoderma edule (Linnaeus, 1758))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 35085 records from 242 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074157-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zg6bxg
title: Occurrence Download

description: A dataset containing 454 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poa holciformis J.Presl"
 ]
}

 The dataset includes 454 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074159-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vapecd
title: Occurrence Download

description: A dataset containing 16309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cerastoderma glaucum (Bruguière, 1789))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 16309 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074160-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.akssz8
title: Occurrence Download

description: A dataset containing 5289 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pisidium amnicum (O.F.Müller, 1774))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5289 records from 163 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074161-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ehnxg8
title: Occurrence Download

description: A dataset containing 132 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxalis erythrorhiza Gillies"
 ]
}

 The dataset includes 132 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074162-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.btndwy
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pisidium punctiferum (Guppy, 1867))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 103 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074163-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8kd5z
title: Occurrence Download

description: A dataset containing 24075 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sphaerium corneum (Linnaeus, 1758))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 24075 records from 251 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074164-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6nnzdw
title: Occurrence Download

description: A dataset containing 1133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Musculium transversum (Say, 1829))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1133 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074165-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vhb7gj
title: Occurrence Download

description: A dataset containing 3756 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Natalus mexicanus Miller, 1902"
 ]
}

 The dataset includes 3756 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074166-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3dvr9t
title: Occurrence Download

description: A dataset containing 5948 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Línea base general de insectos (Collembola) para el valle medio del Magdalena - VMM"
 ]
}

 The dataset includes 5948 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074168-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.56pycj
title: Occurrence Download

description: A dataset containing 25805 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dreissena polymorpha (Pallas, 1771))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 25805 records from 302 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074167-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3m7d4
title: Occurrence Download

description: A dataset containing 4632 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dreissena bugensis (Andrusov, 1897))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4632 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074169-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pgu7uu
title: Occurrence Download

description: A dataset containing 60172 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lathyrus tuberosus L.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 60172 records from 816 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074158-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31366180
title: Systems serology data for Twins study.

description: Antibodies are bifunctional molecules that play a critical role in immune defense, both through their ability to recognize a near infinite number of targets via gene rearrangement and somatic hypermutation in their antigen-binding (Fab) region, and by directing the functional activity of the immune system via subclass/isotype switching and post-translational modifications of the fragment crystallizable (Fc) region. While genetic biases in Fab evolution have been demonstrated, less is known about the genetic regulation of Fc-biology. Thus, we comprehensively profiled 227 pathogen-specific antibody Fc-profiles to 20 antigens from 16 viral and bacterial pathogens and 2 allergens across a cohort of 510 monozygotic and dizygotic female twins. The majority of subclass, isotype, Fc-receptor binding, and Fc-effector functions showed a degree of heritability. GWAS of the top 45 heritable phenotypes identified five genomic regions that were significantly associated with humoral traits and accounted for up to 33% of variance. Co-expression analysis in transcriptomic data indicated a role of cytokine signaling, T cell help, and antigen presentation by myeloid cells as key potential regulators of Fc-biology. Collectively, these data highlight novel genetic mechanisms that govern Fc-biology.
DOI: 10.6084/m9.figshare.31366180.v1
title: Systems serology data for Twins study.

description: Antibodies are bifunctional molecules that play a critical role in immune defense, both through their ability to recognize a near infinite number of targets via gene rearrangement and somatic hypermutation in their antigen-binding (Fab) region, and by directing the functional activity of the immune system via subclass/isotype switching and post-translational modifications of the fragment crystallizable (Fc) region. While genetic biases in Fab evolution have been demonstrated, less is known about the genetic regulation of Fc-biology. Thus, we comprehensively profiled 227 pathogen-specific antibody Fc-profiles to 20 antigens from 16 viral and bacterial pathogens and 2 allergens across a cohort of 510 monozygotic and dizygotic female twins. The majority of subclass, isotype, Fc-receptor binding, and Fc-effector functions showed a degree of heritability. GWAS of the top 45 heritable phenotypes identified five genomic regions that were significantly associated with humoral traits and accounted for up to 33% of variance. Co-expression analysis in transcriptomic data indicated a role of cytokine signaling, T cell help, and antigen presentation by myeloid cells as key potential regulators of Fc-biology. Collectively, these data highlight novel genetic mechanisms that govern Fc-biology.
DOI: 10.15468/dl.qzzben
title: Occurrence Download

description: A dataset containing 1794 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "NetworkKey is 99d66b6c-9087-452f-a9d4-f15f2c2d0e7e",
 "TaxonKey is Chordata"
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Leopardus wiedii [GBIF Backbone Taxonomy], Panthera onca [GBIF Backbone Taxonomy], Puma concolor [GBIF Backbone Taxonomy], Leopardus pardalis [GBIF Backbone Taxonomy], Puma yagouaroundi [GBIF Backbone Taxonomy], Lynx rufus [GBIF Backbone Taxonomy])",
 "Country is one of (Mexico)",
 "BasisOfRecord is one of (Specimen)"
 ]
 }
 ]
}

 The dataset includes 1794 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028040-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48580/dgwpm.v2
title: Cyathodium tetrasporum (Cyathodiaceae, Marchantiopsida), a new species of liverworts with spores permanently united in tetrads
DOI: 10.15468/dl.ws2rue
title: Occurrence Download

description: A dataset containing 74202 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.18_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Coleoptera"
 ]
}

 The dataset includes 74202 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028016-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/37yv58
title: KUO Ephemeroptera collections

description: Majority of Ephemeroptera collections consist mainly of liquid-preserved juvenile specimens.
DOI: 10.7910/dvn/xctvrm
title: Gonystylones A-E, Antiproliferative 5,6-Dihydro-α-Pyrones from the Plant Gonystylus borneensis

description: NMR data for the natural products published in the following article "Gonystylones A-E, Antiproliferative 5,6-Dihydro-α-Pyrones from the Plant Gonystylus borneensis"
DOI: 10.5281/zenodo.18640320
title: Reproducible scRNA-seq PBMC Workflow: Reference, Toy Demonstration Data, and Analysis Outputs

description: Description

This record provides a reproducible, containerized single-cell RNA-seq (scRNA-seq) workflow for peripheral blood mononuclear cell (PBMC) data analysis.

The workflow implements an end-to-end pipeline:





FASTQ quality control (FastQC, MultiQC)




Optional read trimming (Cutadapt)




STARsolo alignment and gene–cell count matrix generation




Seurat-based quality control, normalization, feature selection, clustering, and annotation




Pseudobulk differential expression analysis using DESeq2




Two one-sided tests (TOST) for equivalence testing




Gene set enrichment analysis (GSEA / ORA)




Cell-type–specific co-expression network construction and module enrichment



Execution is managed via Snakemake and Docker to ensure reproducibility and environment consistency. The repository associated with this record contains the complete workflow definition and container configuration.

Contents of Version 2.0.0

This version provides a lightweight demonstration bundle designed to validate workflow execution:





A chromosome 1 (chr1) GRCh38 mini-reference




A pre-built STAR index for chr1




A reduced FASTQ subset (~100,000 reads)




Representative pipeline outputs from a full PBMC run



The toy dataset is intended for rapid testing and reproducibility verification. It runs in approximately 5–10 minutes on a standard workstation after container setup and demonstrates upstream processing through Seurat object creation.

Reproducibility Notes

The full GRCh38 reference genome and annotation files are not included in this archive due to size. Exact reference sources, versions, and configuration details required to reproduce the full analysis are documented in the associated GitHub repository.

The complete workflow, including configuration, container definition, and execution instructions, is available at:

https://github.com/Inkasimo/scRNAseq-pbmc-workflow

This version reflects a stable snapshot of the demonstration data and representative analysis outputs aligned with the corresponding tagged software release.