cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7484531.v1
title: Supplementary Material for: A Simple Method for Removal of the <b><i>Chlamydomonas reinhardtii</i></b> Cell Wall Using a Commercially Available Subtilisin (Alcalase)

description: The algal cell wall is a potent barrier for delivery of transgenes for genetic engineering. Conventional methods developed for higher plant systems are often unable to penetrate or remove algal cell walls owing to their unique physical and chemical properties. Therefore, we developed a simple transformation method for <i>Chlamydomonas reinhardtii</i> using commercially available enzymes. Out of 7 enzymes screened for cell wall disruption, a commercial form of subtilisin (Alcalase) was the most effective at a low concentration (0.3 Anson units/mL). The efficiency was comparable to that of gamete lytic enzyme, a protease commonly used for the genetic transformation of <i>C. reinhardtii</i>. The transformation efficiency of our noninvasive method was similar to that of previous methods using autolysin as a cell wall-degrading enzyme in conjunction with glass bead transformation. Subtilisin showed approximately 35% sequence identity with sporangin, a hatching enzyme of <i>C. reinhardtii</i>, and shared conserved active domains, which may explain the effective cell wall degradation. Our trans­formation method using commercial subtilisin is more reliable and time saving than the conventional method using autolysin released from gametes for cell wall lysis.
DOI: 10.3535/8lk-hv2-tva
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ea4-eca-64h
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23043560.v2
title: Dataset S1

description: The synthesized single-cell-type GEP dataset (sctGEP, Dataset S1)<b>simu_bulk_exp_SCT_N10K_S1.h5ad</b>: 11 cell types<b>simu_bulk_exp_SCT_N10K_S1_16sct.h5ad</b>In creating dataset S1, we generated single-cell-type GEPs (sctGEPs) for each cell type by randomly selecting 100 cells from clusters representing the same cell type in 12 scRNA-seq datasets (Dataset S0). We then calculated the average expression values in the transcript per million (TPM) format for each sctGEP.16 types of cells, including subtypes for B cells, CD8$^+$ T cells and fibroblasts.Non-plasma B cells, Plasma B cells, CD4 T, CD8 T (GZMK high), CD8 T effector, DC, Endothelial Cells, Cancer Cells, CAFs, Myofibroblasts, Macrophages, Mast Cells, NK, Neutrophils, Double-neg-like T, Monocytes.
DOI: 10.17632/56mdhht7s7
title: Data for: Curcumin Analogues Attenuate Aβ25-35-Induced Oxidative Stress in PC12 Cells via Keap1/Nrf2/HO-1 Signaling Pathways
DOI: 10.25582/data.2024-03.3079692/2541341
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/xdl-jgj-qhv
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xjr-q5t-4z9
title: Porphyry

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7812374.v1
title: ECCO2 neutral density and two omega surfaces

description: Neutral density (Jackett and McDougall 1997) and two omega surfaces (Klocker and McDougall, 2009) calculated for a single 3-day mean output of ECCO2. MATLAB file format. These are used by the script run_ECCO2.m in https://github.com/geoffstanley/Topobaric-Surface<br>
DOI: 10.17632/wdd4ddymg2
title: Data for: Mafic-intermediate igneous rocks in the East Kunlun Orogenic Belt, northwestern China: Petrogenesis and implications for regional geodynamic evolution during the Triassic

description: igneous rocks
DOI: 10.3535/3ml-7en-s1k
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hp2-m1t-ddm
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/cmf387rt4c
title: Ficus carica annotation 

description: Newly obtained genome (GTF file)  and sequences' Gene Ontology annotations of Ficus carica
DOI: 10.3535/6ds-kjj-mr4
title: †Atrypa Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vdk-l2q-xcn
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1564752.v2
title: Sperm Proteome Maturation in the Mouse Epididymis

description: Mass Spectra Data Files: Samples consisted of intact epididymides that were harvested from five euthanized adult male mice (Mus musculus). Each epididymis was then defatted, separated from the testis and vas deferens and cut into three segments, corresponding to the caput, corpus, and cauda epididymis, based on morphological analysis. The sperm from each tissue segment were then purified using repeated rounds of centrifugation and pellet resuspension, solubilized in SDS, and ran on a 1-dimensional SDS-PAGE for in-gel digestion. Extracted peptides were analyzed by nanoflow reverse phase liquid chromatography using a nanoAcquity LC system (Waters) coupled in-line with the linear trap quadrupole (LTQ) Orbitrap Velos instrument (Thermo Fisher Scientific). Mass spectrometry data were collected with the instrument operating in data dependent MS/MS mode and analysed using X!Tandem (The GPM; version 2009.10.01.1) searched against the NCBI Mus musculus protein fasta file (dated 3/4/2011, with 29617 entries). X!Tandem was searched with a fragment ion mass tolerance of 0.50Da and a parent ion tolerance of 2.0Da. Iodoacetamide derivative of cysteine was specified as a fixed modification, while oxidation of methionine was specified as a variable modification.
DOI: 10.6084/m9.figshare.24033738.v1
title: Data of “The effects of color and transparency of fruit trays on consumers' perceptual cognition”

description: The data of two related experiments are included, which aims to study the effects of color and transparency of fruit trays on consumers' perceived freshness and purchase intention.In the first experiment, the independent variables are colors of fruit trays (within-subjects factor with four levels: red, green, black and white) and fruit categories (within-subjects factor with two levels: cherry tomato and green grape), and the dependent variables are consumers' perceived freshness and purchase intention. In the second experiment, the independent variables are transparency of fruit trays (within-subjects factor with three levels: transparent, semi-transparent, andnon-transparent) and fruit categories (within-subjects factor with two levels: cherry tomato and green grape), and the dependent variables are consumers' perceived freshness and purchase intention.
DOI: 10.3535/ywn-wk1-h1k
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/6zvr2yj5vs
title: Networking as a business strategy among Brazilian female transnational entrepreneurs in Germany

description: Appendices 1, 2 and 3 of the entitled paper "Networking as a business strategy among Brazilian female transnational entrepreneurs in Germany", accepted for publication in the European Journal of International Management (EJIM).
DOI: 10.25582/data.2024-03.3079693/2541342
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/qpf-9gc-ktr
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tjd-has-g1q
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7ez-bqt-0jk
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wxn-dfk-dmy
title: †Atrypa Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/f4mtsc5mwc
title: Triple oxygen isotope evidence for the pathway of nitrous oxide production in a forested soil with increased emission on rainy days

description: Concentration and isotope data for nitrous oxide emitted from the soil.
DOI: 10.3535/dkf-1f5-1y5
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yv9-f51-1hn
title: Syenite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3079696/2541343
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/3cl-erb-v02
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gyr-a9t-zsm
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25024592.v1
title: Spatio-temporal variability of sea surface temperature on the Portuguese coast

description: Monitoring ocean surface temperature is critical to infer the variability of the upper layers of the ocean, from short temporal scales to climatic change scales. Analysis of the climatological trends and anomalies is fundamental to comprehend the long-term effects of climate change on marine ecosystems and coastal regions. The original data for the dataset presented was collected by the Portuguese Hydrographic Institute (<i>Instituto Hidrográfico</i>) using seven Ondograph and Meteo-oceanography buoys anchored offshore along the Portuguese coast to acquire ocean surface temperatures. The original raw data was pre-processed to provide averages over 3-hour periods and daily averages, and this <i>cleaned</i> data constitutes the provided dataset. The 3-hour temperature averages were obtained mainly between 2011 and 2015, and the daily temperature averages were obtained in intervals that vary with the considered buoy, having an average interval of 14 years per buoy. The data gathered provides a considerable temporal window, enabling the creation of data series and the implementation of data mining algorithms to develop decision support systems. Collecting data <i>in situ</i> makes it possible to validate simulated results obtained using approximation models. This allows for more accurate temperature readings and facilitates testing and correcting created models.
DOI: 10.3535/5sd-h59-6ey
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yxj-htx-wn4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q5j-921-hs2
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zd0-8mq-nw8
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25162409.v5
title: Supplementary Material for: Elevated Urine Hyaluronan Concentrations Are Associated with an Unfavorable Respiratory Outcome in Preterm Neonates at 40 Weeks Postmenstrual Age

description: Introduction:
Hyaluronan (HA) is a major component of the extracellular matrix. Increased pulmonary HA concentrations are associated with several respiratory disorders and is a pathophysiological feature of lung disease. We investigated whether elevated urine HA is a biomarker of an unfavorable 40-week respiratory outcome in preterm infants.
Methods:
Infants comprised a cohort of preterm neonates &lt;31 weeks gestational age (GA) from the Prematurity-Related Ventilatory Control (Pre-Vent) multicenter study. HA was quantified in urine obtained at 1 week and 1 month of age. Respiratory status at 40 weeks post-menstrual age (PMA) was classified as unfavorable [either (1) deceased at or before 40 weeks PMA, (2) an inpatient on respiratory medication, O2 or other respiratory support at 40 weeks, or (3) discharged prior to 40 weeks on medications/O2/other respiratory support], or favorable (alive and previously discharged, or inpatient and off respiratory medications, off O2, and off other respiratory support at 40 weeks PMA). The association between urine HA and the unfavorable 40 week PMA outcome was examined using a multivariate logistic generalized estimation equation model.
Results:
Infants with higher HA at 1 week (but not 1 month) showed increased odds of unfavorable respiratory outcome at 40 weeks PMA (OR (95% CI)=1.87 per 0.01 mg (1.27, 2.73)). 
Discussion and Conclusion:
Neonatal urine screening for HA could identify infants at risk for death or need for respiratory support at term-corrected age (40 weeks PMA). The relationship between elevated HA at 1 week and an unfavorable 40 week outcome was stronger in infants with lower GA.
DOI: 10.25582/data.2024-03.3079698/2541344
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/bnq-lq7-v05
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rt7-eg2-sl2
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/r9hh7gt9ns
title: Data for: Influence of coda stop features on perceived vowel duration

description: Raw response data for the four perception experiments and the R code used to generate the regression models.
DOI: 10.3535/lca-nj4-8t9
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w0n-vv7-25t
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/w8k8x2hyt5
title: Comparison of asymmetric and symmetric offset ablation in myopic astigmatism patients

description: To compare differences in clinical outcomes of symmetric offset (SO) and asymmetric offset (AO) centration strategies in photorefractive keratectomy (PRK) in patients with myopia or myopic astigmatism.
DOI: 10.3535/dnb-6d5-496
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lzf-xrx-s4f
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3524036.v1
title: Appendix A. A list of species and their responses to the removal and mowing treatments.

description: A list of species and their responses to the removal and mowing treatments.
DOI: 10.25582/data.2024-03.3079700/2541345
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/gr6-cj2-207
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wqz-944-lbj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gvj-grv-a6b
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/675-0mc-hlh
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/he6-8c3-pg3
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/arf-1s1-15n
title: Olivenite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yh7-9zb-cey
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/g22bsr2wyt
title: LINF_100008100

description: Exonuclease; Leishmania infantum (strain JPCM5)
DOI: 10.17632/jwtzs7bj5g
title: Data for: Establishing 24-hour Holter reference intervals for clinically healthy puppies

description: Data for the manuscript titled "Holter reference intervals for clinically healthy puppies."
DOI: 10.25582/data.2024-03.3079701/2541346
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/llk-7tv-ahr
title: Albitophyre

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xqn-mvh-m7d
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27988196.v1
title: Data required to support the manuscript.xlsx

description: We obtained monitoring data on soil erosion in the Dabie Mountains through rainfall experiments, revealing the key factors influencing soil erosion in the study area.
DOI: 10.17632/b6vkxd3ymj
title: LINF_090016000

description: elongation factor-1 gamma (EF1G); Leishmania infantum
DOI: 10.3535/v87-gxl-769
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z5g-fgv-tgb
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/dpczr6rns9
title: VIDA Odonto-Experiment Dataset

description: The dataset represents the following variables for the inferior alveolar nerve anesthesia training: experimental group, task execution time; insertion accuracy (distance from the insertion point from the reference point), insertion point coordinates (X, and Y axes); needle angle (deviation of the needle from reference direction); and needle depth. The subjective response variables came from questionnaires about the syringe handling , the simulator sickness symptoms, and the embodiment experience.
DOI: 10.17632/k3mytw52sh
title: Data for: Migration rate of the Luzon subduction system during the late Neogene: Sedimentary records from Hengchun accretionary prism turbidites on Taiwan Island

description: This Supporting Information contains two figures (Figs. S1 and S2) and four large datasets (Datasets S1, S2, S3 and S4), which are all uploaded separately. The main article has provided a detailed data compilation and interpretation, supported by this Supporting Information. The sample collection methods are described in the main article. Additionally, please refer to the detailed analytical methods in the paper. All references have been given in the paper.
DOI: 10.3535/cgf-phv-hd5
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xld-ay1-2p1
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1343279.v1
title: Numerical simulation of abandoned gob methane drainage through surface vertical wells

description: Vertical displacements, reynolds number, and static pressureon on the survey line.
DOI: 10.6084/m9.figshare.27184799.v1
title: Additional file 1 of Viromes vs. mixed community metagenomes: choice of method dictates interpretation of viral community ecology

description: Additional file 1. Supplementary data and tables. Includes Tables S1-S6 as referenced in the main manuscript text.
DOI: 10.17632/6c8pxrd8x3
title: LINF_010006100

description: hypothetical protein - conserved
DOI: 10.17632/cs3mvbrs83
title: Model Evaluation with Weighted Threshold Optimization

description: "mewto" (Model Evaluation with Weighted Threshold Optimization) is an R package that allows users to experiment with different thresholds for classification of prediction results in the case of binary classification problems and visualize various model evaluation metrics, confusion matrices and the ROC curve. It also allows users to calculate the optimal threshold based on a weighted evaluation criterion.
DOI: 10.25582/data.2024-03.3079705/2541347
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/b01-gbq-8m1
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fw4-tqt-174
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/br8-3sv-mrj
title: Basalt

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nve-ljz-y1r
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22275169.v1
title: Peruvian BioKusharu Food Database

description: As part of the Peruvian research study called: “ <em>Does food biodiversity protect against malnutrition and favor the resilience to climate change-related events in Amazon Indigenous communities? A protocol for a mixed methods study</em>” (see protocol published here), we aimed to create a food-composition database to analyze the nutritional content of the dietary information collected. We partner with myfood24® company to provide guidelines to complete a friendly online version of the database to calculate the nutritient content of macronutrients and micronutrients relevant to the main study, since we are focused on investigating anaemia, we were more interested in the nutrition content of iron in the food intake. This Peruvian BioKusharu food database is going to be used to analyze the food intake collected with a 24-hour recall tool among six Shawi communities to understand the iron intake in the diet. We called this database <em>BioKusharu</em>, since <em>Kusharu </em>means food in the Shawi indigenous language, and <em>Bio </em>represents the biodiversity in the Peruvian Amazon.
DOI: 10.3535/5np-79q-8j2
title: Sandstone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gh6-090-67g
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3079709/2541348
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/fsj-1ce-6ez
title: rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yhq-x1s-zfx
title: Mollusca

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.