cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zdw8bc
title: Occurrence Download

description: A dataset containing 7109 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chaetopappa DC."
 ]
}

 The dataset includes 7109 records from 133 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0202541-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9jbssg
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-100.0",
 "TaxonKey is Iberolacerta monticola (Boulenger, 1905)"
 ]
}

 The dataset includes 122 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017055-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.65z86j
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platystele psix Luer & Hirtz"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084411-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7s4499
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Capreolus pygargus (Pallas, 1771)"
 ]
}

 The dataset includes 63 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0202531-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x73vwg
title: Occurrence Download

description: A dataset containing 1585 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Nepal",
 "TaxonKey is Marchantiophyta"
 ]
}

 The dataset includes 1585 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0330217-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2mbsc5
title: Occurrence Download

description: A dataset containing 24433 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Mangifera L."
 ]
}

 The dataset includes 24433 records from 662 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281657-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cebfrv
title: Occurrence Download

description: A dataset containing 129138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "TaxonKey is one of (Aponogeton distachyos L.f., Arthurdendyus triangulatus (Dendy, 1895), Cabomba caroliniana A.Gray, Callosciurus finlaysonii (Horsfield, 1823), Cherax destructor Clark, 1936, Corvus splendens Vieillot, 1817, Crassula helmsii (Kirk) Cockayne, Elodea densa (Planch.) Casp., Eriocheir sinensis H.Milne Edwards, 1853, Erythranthe guttata (DC.) G.L.Nesom, Faxonius immunis (Hagen, 1870), Faxonius juvenilis (Hagen, 1870), Faxonius rusticus (Girard, 1852), Faxonius virilis (Hagen, 1870), Gambusia affinis (Baird & Girard, 1853), Heracleum mantegazzianum Sommier & Levier, Heracleum persicum Desf. ex Fisch., C.A.Mey. & Avé-Lall., Heracleum pubescens (Hoffm.) M.Bieb., Houttuynia cordata Thunb., Hydrocotyle ranunculoides L.f., Impatiens glandulifera Royle, Koenigia polystachya (Wall. ex Meisn.) T.M.Schust. & Reveal, Lagarosiphon major (Ridl.) Moss, Lepomis gibbosus (Linnaeus, 1758), Limnoperna fortunei (Dunker, 1857), Ludwigia grandiflora (Michx.) Greuter & Burdet, Ludwigia peploides (Kunth) P.H.Raven, Lysichiton americanus Hultén & H.St.John, Morone americana (Gmelin, 1789), Muntiacus reevesi (Ogilby, 1839), Myriophyllum aquaticum (Vell.) Verdc., Myriophyllum heterophyllum Michx., Pacifastacus leniusculus (Dana, 1852), Petasites japonicus (Siebold & Zucc.) Maxim., Pontederia cordata L., Procambarus acutus (Girard, 1852), Procambarus clarkii (Girard, 1852), Procambarus virginalis Lyko, 2017, Pseudorasbora parva (Temminck & Schlegel, 1846), Pycnonotus cafer (Linnaeus, 1766), Saururus cernuus L., Sciurus carolinensis Gmelin, 1788, Sciurus niger Linnaeus, 1758, Solenopsis invicta Buren, 1972, Solenopsis richteri Forel, 1909, Threskiornis aethiopicus (Latham, 1790), Vespa velutina Lepeletier, 1836, Zizania latifolia (Griseb.) Hance ex F.Muell.)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 129138 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084429-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cbkkr3
title: Occurrence Download

description: A dataset containing 381 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((18.39821 43.85155,18.42754 43.85155,18.42754 43.86329,18.39821 43.86329,18.39821 43.85155))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year 1991-2022"
 ]
}

 The dataset includes 381 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0185655-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e8vt38
title: Occurrence Download

description: A dataset containing 18873 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brachyglottis J.R.Forst. & G.Forst."
 ]
}

 The dataset includes 18873 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0202530-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbtrzn
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platystele papillosa Luer"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084399-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t4kk74
title: Occurrence Download

description: A dataset containing 229080 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Machine Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sus scrofa Linnaeus, 1758"
 ]
}

 The dataset includes 229080 records from 1583 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0382175-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kgbnny
title: Occurrence Download

description: A dataset containing 135138 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scrophularia auriculata"
 ]
}

 The dataset includes 135138 records from 1077 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000384-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eqeg7p
title: Occurrence Download

description: A dataset containing 6983 species occurrences available in GBIF matching the query:
{
 "and" : [
 "MediaType is Image",
 "TaxonKey is Isodontia mexicana"
 ]
}

 The dataset includes 6983 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000450-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n5us4x
title: Occurrence Download

description: A dataset containing 104038 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia lathyris"
 ]
}

 The dataset includes 104038 records from 950 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000402-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vjfefw
title: Occurrence Download

description: A dataset containing 9511 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phorcus lineatus (da Costa, 1778)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9511 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071659-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28212419
title: Fig2_CWT_ridge_readout_normalized_detrended

description: Readout along the maximal power component (ridge) in a wavelet spectrum in continuous wavelet transform (CWT) analysis.CWT performed on detrended and amplitude-normalized signals, using an adaptive threshold (1/4 of the maximal wavelet power)
DOI: 10.6084/m9.figshare.28212419.v1
title: Fig2_CWT_ridge_readout_normalized_detrended

description: Readout along the maximal power component (ridge) in a wavelet spectrum in continuous wavelet transform (CWT) analysis.CWT performed on detrended and amplitude-normalized signals, using an adaptive threshold (1/4 of the maximal wavelet power)
DOI: 10.15468/dl.ek8xad
title: Occurrence Download

description: A dataset containing 537 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Saphanus piceus (Laicharting, 1784)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 537 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071660-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.atv58n
title: Occurrence Download

description: A dataset containing 24731 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((15.83283 52.55836,16.28034 52.55836,16.28034 52.69269,15.83283 52.69269,15.83283 52.55836))",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 24731 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071662-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5h93vc
title: Occurrence Download

description: A dataset containing 6234 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Akebia quinata (Houtt.) Decne.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6234 records from 206 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071661-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5nc54x
title: Occurrence Download

description: A dataset containing 3716 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salvadora persica L."
 ]
}

 The dataset includes 3716 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071664-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qn5yqv
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Berberis congestiflora Gay"
 ]
}

 The dataset includes 61 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071665-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j4zpt9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schurmannia sicula Löbl & Smetana, 2010",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071667-241126133413365/datasets/export for details.
DOI: 10.15468/dl.3npb37
title: Occurrence Download

description: A dataset containing 6234 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Akebia quinata (Houtt.) Decne.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6234 records from 206 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071666-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p8ret9
title: Occurrence Download

description: A dataset containing 9524 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Phylogenomics and the rise of the angiosperms"
 ]
}

 The dataset includes 9524 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071668-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pq3ufc
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((17.90677 47.62204,17.88373 46.32671,19.11165 46.34301,18.93235 47.64157,17.90677 47.62204))",
 "Month is February",
 "OccurrenceStatus is Present",
 "TaxonKey is Fungi",
 "Year 2023-2025"
 ]
}

 The dataset includes 24 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071669-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cusbhv
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scobicia barbifrons (Wollaston, 1864)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071672-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2uwwqu
title: Occurrence Download

description: A dataset containing 27856 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-6.3647 36.65705,-6.15695 36.40665,-6.1248 36.27423,-5.66725 36.04753,-5.3853 36.0955,-5.08852 36.51406,-5.08852 37.04889,-6.05308 37.14358,-6.3647 36.65705))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 27856 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071671-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ws9ywn
title: Occurrence Download

description: A dataset containing 6234 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Akebia quinata (Houtt.) Decne.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6234 records from 206 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071673-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ms4mn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scobicia ficicola (Wollaston, 1865)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071674-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.26156182
title: Spatiotemporal diversification of global junipers: Traces of niche conservatism and trait-dependent diversification.

description: This folder contains all the scripts used to replicate the manuscript <b>Spatiotemporal diversification of global junipers: Traces of niche conservatism and trait-dependent diversification.</b> Martinez de León, R & Moreno-Letelier, R. 2024. <br>Ecology and Evolution.
DOI: 10.6084/m9.figshare.26156182.v1
title: Spatiotemporal diversification of global junipers: Traces of niche conservatism and trait-dependent diversification.

description: This folder contains all the scripts used to replicate the manuscript <b>Spatiotemporal diversification of global junipers: Traces of niche conservatism and trait-dependent diversification.</b> Martinez de León, R & Moreno-Letelier, R. 2024. <br>Ecology and Evolution.
DOI: 10.6084/m9.figshare.28038500
title: Raw data

description: The data published here were used to generate the figures that feature in the following manuscript draft:<b><i>CTHRC1</i></b><b> Expression Results in Secretion-Mediated, SOX9-Dependent Suppression of Adipogenesis: Implications for the Regulatory Role of Newly Identified CTHRC1</b><sup><strong>+</strong></sup><b>/</b><b>PDGFR-alpha</b><sup><strong>+</strong></sup><b> Stromal Cells of Adipose</b>
DOI: 10.6084/m9.figshare.28038500.v1
title: Siviski et al_Adipocyte Journal_Raw data.xlsx

description: The data published here were used to generate the figures that feature in the following manuscript draft:<b><i>CTHRC1</i></b><b> Expression Results in Secretion-Mediated, SOX9-Dependent Suppression of Adipogenesis: Implications for the Regulatory Role of Newly Identified CTHRC1</b><sup><strong>+</strong></sup><b>/</b><b>PDGFR-alpha</b><sup><strong>+</strong></sup><b> Stromal Cells of Adipose</b>
DOI: 10.6084/m9.figshare.28038500.v2
title: Raw data

description: The data published here were used to generate the figures that feature in the following manuscript draft:<b><i>CTHRC1</i></b><b> Expression Results in Secretion-Mediated, SOX9-Dependent Suppression of Adipogenesis: Implications for the Regulatory Role of Newly Identified CTHRC1</b><sup><strong>+</strong></sup><b>/</b><b>PDGFR-alpha</b><sup><strong>+</strong></sup><b> Stromal Cells of Adipose</b>
DOI: 10.15784/601878
title: Snapshot record of CO2 and CH4 from the Allan Hills, Antarctica, ranging from 400,000 to 3 million years old

description: This dataset contains snapshots of carbon dioxide and methane concentrations, total air content, stable isotope measurements of carbon dioxide, as well as measurements of molecular oxygen and nitrogen and their stable isotopic signatures. Samples come from the ALHIC1901 ice core from the Allan Hills, Antarctica. Where possible, new ages have been assigned to previous measurements from the ALHIC1503 ice core. For samples containing excess CO2 from a secondary source, estimated atmospheric CO2 ranges are included.
DOI: 10.15468/dl.ykkq5y
title: Occurrence Download

description: A dataset containing 916 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((17.90677 47.62204,17.88373 46.32671,19.11165 46.34301,18.93235 47.64157,17.90677 47.62204))",
 "IucnRedListCategory is NE",
 "Month is February",
 "OccurrenceStatus is Present",
 "Year 2023-2025"
 ]
}

 The dataset includes 916 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071679-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qvtfsg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Seidlitzella procera (Kraatz, 1858)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071678-241126133413365/datasets/export for details.
DOI: 10.15468/dl.5d4sda
title: Occurrence Download

description: A dataset containing 6234 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Akebia quinata (Houtt.) Decne.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6234 records from 206 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071677-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5gg6hz
title: Occurrence Download

description: A dataset containing 84760 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-6.25542 36.99179,-6.50321 36.80888,-6.47462 36.61789,-6.24589 36.36505,-5.95046 36.08829,-5.48348 35.96497,-5.10227 36.18065,-4.68294 36.3804,-4.36845 36.61024,-4.56858 37.43957,-4.84496 37.92228,-5.54066 37.74163,-6.07435 37.6134,-6.2173 37.21981,-6.25542 36.99179))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 84760 records from 145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071676-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14166397
title: Sampled Structures from Diffusion Models for Protein SHAPES

description: Data associated with SHAPES (Structural and Hierarchical Assessment of Proteins with Embedding Similarity)



rmsd.tar.gz : RMSD and TM scores of ESMFold predicted structures with original designed backbones.

mpnn.tar.gz : ProteinMPNN designed sequences.

raster.tar.gz : CATH and sampled structures annotated with the grid square label after rasterization. Also includes the specific structures which are displayed in the raster plots.

dssp.tar.gz : Secondary structure frequences computed by DSSP.

samples.tar.gz : All sampled structures.


Due to size, the ESMFold predicted structures for eight ProteinMPNN-designed sequences per sampled backbone are not included.

 

Code: proteinshapes-main.zip
DOI: 10.5281/zenodo.14166398
title: Sampled Structures from Diffusion Models for Protein SHAPES

description: Samples used to analyze distribution coverage of generative models of protein structures