cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16412757
title: Biodiversity-Driven Screening of Amphibian Skin Secretions for Inflammatory Modulation in Joint diseases

description: Dataset of the effect of  skin secretion from 17 amphibian species on human cells involved in joint diseases. After biochemical characterization, secretions were added to to chondrocytes, synoviocytes, and macrophages for 24 hours. Cytotoxicity and the release of IL-6, IL-8, TNF-α, and IL-1β were assessed.
DOI: 10.5281/zenodo.16412758
title: Biodiversity-Driven Screening of Amphibian Skin Secretions for Inflammatory Modulation in Joint diseases

description: Dataset of the effect of  skin secretion from 17 amphibian species on human cells involved in joint diseases. After biochemical characterization, secretions were added to to chondrocytes, synoviocytes, and macrophages for 24 hours. Cytotoxicity and the release of IL-6, IL-8, TNF-α, and IL-1β were assessed.
DOI: 10.15468/dl.y9wcfx
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rattus exulans",
 "Country is Vanuatu",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039847-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6dfc8k
title: Occurrence Download

description: A dataset containing 6716 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Matricaria discoidea",
 "Country is Poland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6716 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039848-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rqpygc
title: Occurrence Download

description: A dataset containing 45417 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myosotis stricta"
 ]
}

 The dataset includes 45417 records from 659 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039841-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3y5pej
title: Occurrence Download

description: A dataset containing 24157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation)",
 "Month is one of (March, April, May, June)",
 "OccurrenceStatus is Present",
 "StateProvince is Saskatchewan",
 "TaxonKey is Zenaida macroura"
 ]
}

 The dataset includes 24157 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039849-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5523/bris.31ab42htfown02izy42gknlkcj
title: Grandon-Ojeda et al., Matching multiple backgrounds: egg camouflage across different habitats in a shorebird
title: Egg camouflage in a shorebird

description: Data, and associated R-script for analysis, to accompany the paper Grandon-Ojeda et al., Matching multiple backgrounds: egg camouflage across different habitats in a shorebird
DOI: 10.15468/dl.kvghvm
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Semimytilus algosus",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039850-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fsf4yw
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Matricaria discoidea",
 "Country is Portugal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 96 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039852-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15776379
title: Molecular Modeling and Molecular Dynamics Simulation of a Packed and Intact Bacterial Microcompartment

description: Input structures for a manuscript, along with selected output data and structures. This directory structure contains a cut-down copy of the directories used to generate the simulation data and the analysis. In order to make this fit into the 50GB Zenodo limit, it was constructed with the following tar command:

tar -zcvf bmc-packed.tar.gz --exclude="*BAK" --exclude="*#" --exclude="*log" --exclude="*xsc" --exclude="*.xst" --exclude="*coor" --exclude="*vel" --exclude="*[0-9].out" --exclude="*old" --exclude="*dcd" --exclude="*tmp" --exclude="*ppm" --exclude="*png" --exclude="*pdf"  --exclude="*catchy*" --exclude="*svg" --exclude="*gexf" --exclude="*restart*" --exclude="*history" --exclude="core.*" --exclude="FFTW_NAMD*" --exclude="*avi" --exclude="*mp4" --exclude="alltraj.js" --exclude="wholetrajsurface" --exclude="*recentered*.js*" BMC-PACKED-SHELL

 

The data is split into two directories initially "build" and "Simulations"



"build" directory is the part where initial system for a packed bmc.

"Simulations" directory has the different namd files for running simulation, and a sub folder of "Analysis" contains script for analysis of the simulation trajectory.
DOI: 10.5281/zenodo.15776380
title: Molecular Modeling and Molecular Dynamics Simulation of a Packed and Intact Bacterial Microcompartment

description: Input structures for a manuscript, along with selected output data and structures. This directory structure contains a cut-down copy of the directories used to generate the simulation data and the analysis. In order to make this fit into the 50GB Zenodo limit, it was constructed with the following tar command:

tar -zcvf bmc-packed.tar.gz --exclude="*BAK" --exclude="*#" --exclude="*log" --exclude="*xsc" --exclude="*.xst" --exclude="*coor" --exclude="*vel" --exclude="*[0-9].out" --exclude="*old" --exclude="*dcd" --exclude="*tmp" --exclude="*ppm" --exclude="*png" --exclude="*pdf"  --exclude="*catchy*" --exclude="*svg" --exclude="*gexf" --exclude="*restart*" --exclude="*history" --exclude="core.*" --exclude="FFTW_NAMD*" --exclude="*avi" --exclude="*mp4" --exclude="alltraj.js" --exclude="wholetrajsurface" --exclude="*recentered*.js*" BMC-PACKED-SHELL

 

The data is split into two directories initially "build" and "Simulations"



"build" directory is the part where initial system for a packed bmc.

"Simulations" directory has the different namd files for running simulation, and a sub folder of "Analysis" contains script for analysis of the simulation trajectory.
DOI: 10.15468/dl.e9rvf7
title: Occurrence Download

description: A dataset containing 4144 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Silene menziesii"
 ]
}

 The dataset includes 4144 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039853-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9c3xqp
title: Occurrence Download

description: A dataset containing 51722 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Sterna hirundo)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 51722 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039817-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t7snzz
title: Occurrence Download

description: A dataset containing 436 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erigeron canadensis",
 "Country is Luxembourg",
 "HasCoordinate is true"
 ]
}

 The dataset includes 436 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039854-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14636890
title: Nitrogen deposition and water addition affect microbial carbon and nitrogen cycling: Insights from a 10-year experiment in a semi-arid steppe

description: Anthropogenic nitrogen (N) deposition and increased precipitation are known to alter soil microbial communities. However, the interactions between N deposition and increased precipitation on soil microbial composition and the microbial-mediated carbon (C) and N cycling functions remain unclear. A 10-year experiment was conducted on the Mongolian Plateau to evaluate the effects of N deposition (0, 10 g N m⁻² year⁻¹) and water addition (0%, 30% above average annual precipitation) on: (1) soil nutrient dynamics and pH, and (2) their subsequent impacts on bacterial community structure and C/N cycling functions. We found that long-term N deposition significantly altered the bacterial community composition, specifically increased the abundance of Alphaproteobacteria, Firmicutes, and Bacteroidetes while reducing Acidobacteria. It also simplified bacterial network complexity and stimulated C metabolic functions (aromatic compound degradation, cellulolysis, hydrocarbon degradation). Water addition enhanced functions linked to chitin degradation, aromatic compound degradation and nitrogen fixation. Structural equation modeling suggests N deposition indirectly promoted C cycling via soil acidification, while water addition directly boosted N cycling and indirectly influenced it through soil organic carbon. Our findings underscore that N deposition will enhance bacterial C acquisition and emphasize the importance of pH in regulating microbial nutrient cycles. This study provides new experimental insights into the potential mechanisms by which nutrient inputs and precipitation changes affect microbial community structure and functions of the C and N cycling.
DOI: 10.5281/zenodo.14636891
title: Nitrogen deposition and water addition affect microbial carbon and nitrogen cycling: Insights from a 10-year experiment in a semi-arid steppe

description: Anthropogenic nitrogen (N) deposition and increased precipitation are known to alter soil microbial communities. However, the interactions between N deposition and increased precipitation on soil microbial composition and the microbial-mediated carbon (C) and N cycling functions remain unclear. A 10-year experiment was conducted on the Mongolian Plateau to evaluate the effects of N deposition (0, 10 g N m⁻² year⁻¹) and water addition (0%, 30% above average annual precipitation) on: (1) soil nutrient dynamics and pH, and (2) their subsequent impacts on bacterial community structure and C/N cycling functions. We found that long-term N deposition significantly altered the bacterial community composition, specifically increased the abundance of Alphaproteobacteria, Firmicutes, and Bacteroidetes while reducing Acidobacteria. It also simplified bacterial network complexity and stimulated C metabolic functions (aromatic compound degradation, cellulolysis, hydrocarbon degradation). Water addition enhanced functions linked to chitin degradation, aromatic compound degradation and nitrogen fixation. Structural equation modeling suggests N deposition indirectly promoted C cycling via soil acidification, while water addition directly boosted N cycling and indirectly influenced it through soil organic carbon. Our findings underscore that N deposition will enhance bacterial C acquisition and emphasize the importance of pH in regulating microbial nutrient cycles. This study provides new experimental insights into the potential mechanisms by which nutrient inputs and precipitation changes affect microbial community structure and functions of the C and N cycling.
DOI: 10.17632/cskh699syg.2
title: Occurrences of Cactaceae on the American continent

description: Reliable biodiversity data are fundamental for assessing species distributions, detecting knowledge gaps, and informing conservation strategies. We present a comprehensive dataset containing 435,694 georeferenced occurrence records for 1,892 species of Cactaceae across the Americas. This large-scale compilation provides an overview of the spatial distribution of cactus species, revealing geographic and taxonomic biases in sampling efforts. The dataset offers a valuable resource for advancing ecological and biogeographic research and supports future analyses aimed at understanding the diversity, distribution, and conservation needs of this emblematic plant family. This database is an expansion of the database compiled by Amaral et al., 2022.
DOI: 10.15468/dl.urakxx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erigeron canadensis",
 "Country is Marshall Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039855-250717081556266/datasets/export for details.
DOI: 10.15468/dl.kbck94
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Ficus madagascariensis",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 14 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039856-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/2b2y5rw75s.1
title: Self-esteem, suicidal tendencies and emotional intelligence in adolescents

description: Self-esteem, suicidal tendencies and emotional intelligence in adolescents
DOI: 10.15468/dl.y3pkme
title: Occurrence Download

description: A dataset containing 4205 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Silene uralensis"
 ]
}

 The dataset includes 4205 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039857-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pyfrsw
title: Occurrence Download

description: A dataset containing 23767 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Sterna hirundo)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 23767 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039858-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eh49se
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Matricaria discoidea",
 "Country is Serbia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039860-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28854836
title: Output_Carbenes_2025.rar

description: Source data for calculations performed with Gaussian 16 (file: ONIOM_Model_FIN.out) and Orca 5.0.3 (files: DFT_Model_Step1-37_FIN.out, DFT_Model_Step38-52_FIN.out, CASSCF_Model_statespec-T1_FIN.out, CASSCF_Model_statespec-T0_FIN.out, CASSCF_Model_stateavg_FIN.out, BrokenSymmetry_DNC). For the DFT based geometry optimization of the smaller model used, the calculations had to be restarted after step 37 due to run time restrictions (see files: DFT_Model_Step1-37_FIN.out and DFT_Model_Step38-52_FIN.out).
DOI: 10.15468/dl.7w9nfj
title: Occurrence Download

description: A dataset containing 9803 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Matricaria discoidea",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9803 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039859-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28854836.v2
title: Output_Carbenes_2025.rar

description: Source data for calculations performed with Gaussian 16 (file: ONIOM_Model_FIN.out) and Orca 5.0.3 (files: DFT_Model_Step1-37_FIN.out, DFT_Model_Step38-52_FIN.out, CASSCF_Model_statespec-T1_FIN.out, CASSCF_Model_statespec-T0_FIN.out, CASSCF_Model_stateavg_FIN.out). For the DFT based geometry optimization of the smaller model used the calculations had to be restarted after step 37 due to run time restrictions (see files: DFT_Model_Step1-37_FIN.out and DFT_Model_Step38-52_FIN.out) .
DOI: 10.6084/m9.figshare.28854836.v3
title: Output_Carbenes_2025.rar

description: Source data for calculations performed with Gaussian 16 (file: ONIOM_Model_FIN.out) and Orca 5.0.3 (files: DFT_Model_Step1-37_FIN.out, DFT_Model_Step38-52_FIN.out, CASSCF_Model_statespec-T1_FIN.out, CASSCF_Model_statespec-T0_FIN.out, CASSCF_Model_stateavg_FIN.out, BrokenSymmetry_DNC). For the DFT based geometry optimization of the smaller model used, the calculations had to be restarted after step 37 due to run time restrictions (see files: DFT_Model_Step1-37_FIN.out and DFT_Model_Step38-52_FIN.out).
DOI: 10.15468/dl.bxx9v3
title: Occurrence Download

description: A dataset containing 339 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Silene suksdorfii"
 ]
}

 The dataset includes 339 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039861-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/bfxz3kmp57
title: MZ Soil Date1

description: his study conducted a soil incubation experiment using two easily biodegradable organic materials (kitchen waste hydrolysate and sugarcane molasses) at varying concentrations. By monitoring short-term changes in soil physicochemical properties, water-stable aggregate size distribution, organic carbon fractions, enzyme activities, EPS components, biological biomass, and community structure over 20, 40, 60, and 80 days, we aimed to: (1) evaluate the efficacy of degradable organic wastes in stimulating soil biological activity and improving soil structure; and (2) systematically elucidate the mechanisms underlying soil particle aggregation mediated by soil biostimulants.
DOI: 10.17632/bfxz3kmp57.1
title: MZ Soil Date1

description: his study conducted a soil incubation experiment using two easily biodegradable organic materials (kitchen waste hydrolysate and sugarcane molasses) at varying concentrations. By monitoring short-term changes in soil physicochemical properties, water-stable aggregate size distribution, organic carbon fractions, enzyme activities, EPS components, biological biomass, and community structure over 20, 40, 60, and 80 days, we aimed to: (1) evaluate the efficacy of degradable organic wastes in stimulating soil biological activity and improving soil structure; and (2) systematically elucidate the mechanisms underlying soil particle aggregation mediated by soil biostimulants.
DOI: 10.15468/dl.xnr8up
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cylindropuntia pallida",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 39 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039862-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vs3jke
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erigeron canadensis",
 "Country is Montenegro",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039863-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/6jbv72m5zv
title: Proteomic Data of Hedyosmum brasiliense Essential Oil Against Breast Cancer Cells

description: This dataset contains raw proteomic data derived from label-free quantitative mass spectrometry (shotgun proteomics) of human breast epithelial cells (MCF-10A) and triple-negative breast cancer cells (MDA-MB-231), either untreated or treated with Hedyosmum brasiliense essential oil. Data are provided in Excel format and include protein identifiers, quantification values, fold changes, and statistical significance (p-values). The files are organized by cell type comparison:

PTN_TABLE_HB10A x CTRL10A.xlsx – Proteomic data comparing treated and control MCF-10A cells

PTN_TABLE_HBMDA x CTRLMDA.xlsx – Proteomic data comparing treated and control MDA-MB-231 cells

These data support the manuscript: Hedyosmum brasiliense Essential Oil Induces Necrotic Cell Death in Triple-Negative Breast Cancer via Tubulin Destabilization and Stress Pathway Dysregulation.