cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25377/sussex.12593567.v1
title: Data for research article 'Establishment, spread and impact of an invasive planthopper on its invasive host plant: Prokelisia marginata (Homoptera: Delphacidae) exploiting Spartina anglica (Poales: Poaceae) in Britain'

description: <b>Data for paper published in Ecological Entomology July 2020</b><br><br>Data contains arthropod community composition observational surveys and impact of P. marginata colonisation on performance metrics of S. anglica host plants under field and glasshouse experimental conditions.<br>For details, please read the methods in the published paper.<br>Abstract 1. Since its recent arrival in Britain, the planthopper <i>Prokelisia marginata</i> has spread widely around saltmarshes on the east and south coast of England and south Wales, feeding on Common Cordgrass, <i>Spartina anglica</i>, itself an invasive non-native species. 2. Results suggest that <i>P. marginata</i> populations in Britain are benefitting from a degree of natural enemy release. No evidence of parasitism was found in over 71,000 eggs, nymphs and adults inspected. The only potential natural enemy control was suggested by a positive correlation between the densities of planthoppers and generalist spiders. 3. Experimental exposure under both glasshouse and field conditions to typical field densities of planthoppers resulted in significant negative effects on a number of host plant performance metrics. 4. <i>S. anglica</i> is important for stabilising estuarine sediments and has been deliberately planted for this purpose in the past. Its weakening as a result of heavy planthopper herbivory could have serious consequences for the long-term stability of Britain’s vulnerable saltmarsh habitats.<br><br><br>
DOI: 10.21954/ou.rd.12593510
title: iNaturalist young people's contributions

description: This anonymised dataset contains the contributions (observations of organisms) of young people aged 5-19 on iNaturalist.<br>
DOI: 10.6084/m9.figshare.12593513
title: Table 1. DMR-based topic modeling result (30 topics)

description: DaWaK_DMR-based topic modeling result (30 topics)
DOI: 10.6084/m9.figshare.12593513.v1
title: Table 1. DMR-based topic modeling result (30 topics)

description: DaWaK_DMR-based topic modeling result (30 topics)
DOI: 10.21954/ou.rd.12593510.v1
title: iNaturalist young people's contributions

description: This anonymised dataset contains the contributions (observations of organisms) of young people aged 5-19 on iNaturalist.<br>
DOI: 10.6084/m9.figshare.12593498
title: Supplementary table 2

description: Relevant informations of viruses identified in this study
DOI: 10.6084/m9.figshare.12593501
title: Supplementary Material for: Fibrosing Inflammatory Pseudotumor Presenting as Cranial Neuropathy

description: We report two cases of biopsy-corroborated “fibrosing inflammatory pseudotumor” to illustrate that the entity, rarely described in the neurological literature, should be included in the differential diagnosis of either a cranial mononeuropathy or, certainly, in the case of progressive cranial neuropathies. A broad differential diagnosis arises in certain contexts. Early steroid treatment can be effective, and perhaps later-generation immune-modulating agents may confer further options, although there is no known definitive treatment.
DOI: 10.6084/m9.figshare.12593477
title: supplementary table1

description: Genome size of relevant viral families in this study<br><br><br><br>
DOI: 10.6084/m9.figshare.12593501.v1
title: Supplementary Material for: Fibrosing Inflammatory Pseudotumor Presenting as Cranial Neuropathy

description: We report two cases of biopsy-corroborated “fibrosing inflammatory pseudotumor” to illustrate that the entity, rarely described in the neurological literature, should be included in the differential diagnosis of either a cranial mononeuropathy or, certainly, in the case of progressive cranial neuropathies. A broad differential diagnosis arises in certain contexts. Early steroid treatment can be effective, and perhaps later-generation immune-modulating agents may confer further options, although there is no known definitive treatment.
DOI: 10.6084/m9.figshare.12593477.v1
title: supplementary table1

description: Genome size of relevant viral families in this study<br><br><br><br>
DOI: 10.6084/m9.figshare.12593498.v2
title: Supplementary table 2

description: Relevant informations of viruses identified in this study
DOI: 10.6084/m9.figshare.12593420
title: data.xlsx

description: data.xlxs_sheet1:3D model point structure coordinates and calculated 8-point geometric structure 3D invariant,show figure "3D model 8-point structure.png"data.xlxs_sheet2:2D invariants of eight-point geometry calculated in the simulation image experiment,show figures"3D restructionimage1--12.png"<br>data.xlxs_sheet3:Invariants of the eight-point geometry calculated in the real image experiment,,show figures"2 adjacent planes str1--20.png"<br>
DOI: 10.6084/m9.figshare.12593498.v1
title: Supplementary table 2

description: Relevant informations of viruses identified in this study
DOI: 10.6084/m9.figshare.12593480.v1
title: LES of a classical hydraulic jump

description: This dataset contains results from Large-Eddy Simulations of a classical hydraulic jump at Fr=2. It accompanies the following article:<br>Kindly, cite the article if you make use of the data.
DOI: 10.6084/m9.figshare.12593378
title: Supplementary Material for: Virtual Reality Training Helpful in Motor and Cognition in Corticobasal Syndrome: A Case Report PET Study

description: Corticobasal syndrome (CBS) is a rare progressive neurodegenerative disease characterized by a combination of asymmetric motor symptoms and non-motor symptoms. CBS is poorly responsive to levodopa. Non-pharmacological strategies have been found to be useful as components of a multidisciplinary therapeutic approach for patients with CBS. The purpose of this study was to investigate the effects of virtual reality training in addressing symptoms of CBS. A 64-year-old man was clinically diagnosed as CBS one year after the onset of complaints. Positron emission tomography (PET) scan showed asymmetrical hypometabolism in the right thalamus and basal ganglia. The patient was evaluated for balance, gait, mobility, and cognition 1 week before, 1 week after, and 1 year after 6 weeks of training, 3 times weekly (18 sessions in total). All clinical outcomes and PET result had improved after the intervention; cognition and balance were maintained after 1 year. Additionally, the asymmetric hypometabolism, which had been detectable on the PET scan, became normal, and a relative improvement was noted in the visual evaluation of cortical involvement. Virtual reality may address different aspects of motor and cognition and possibly brain metabolic changes that can affect the course of the disease in patients with CBS.
DOI: 10.6084/m9.figshare.12593348
title: Socioeconomic and soft drink consumption among adults in Cambodia

description: This survey was conducted in Cambodia. The title of the study is the association between socioeconomic and soft drink consumption among adults in Cambodia<br>
DOI: 10.6084/m9.figshare.12593378.v1
title: Supplementary Material for: Virtual Reality Training Helpful in Motor and Cognition in Corticobasal Syndrome: A Case Report PET Study

description: Corticobasal syndrome (CBS) is a rare progressive neurodegenerative disease characterized by a combination of asymmetric motor symptoms and non-motor symptoms. CBS is poorly responsive to levodopa. Non-pharmacological strategies have been found to be useful as components of a multidisciplinary therapeutic approach for patients with CBS. The purpose of this study was to investigate the effects of virtual reality training in addressing symptoms of CBS. A 64-year-old man was clinically diagnosed as CBS one year after the onset of complaints. Positron emission tomography (PET) scan showed asymmetrical hypometabolism in the right thalamus and basal ganglia. The patient was evaluated for balance, gait, mobility, and cognition 1 week before, 1 week after, and 1 year after 6 weeks of training, 3 times weekly (18 sessions in total). All clinical outcomes and PET result had improved after the intervention; cognition and balance were maintained after 1 year. Additionally, the asymmetric hypometabolism, which had been detectable on the PET scan, became normal, and a relative improvement was noted in the visual evaluation of cortical involvement. Virtual reality may address different aspects of motor and cognition and possibly brain metabolic changes that can affect the course of the disease in patients with CBS.
DOI: 10.6084/m9.figshare.12593480.v2
title: LES of a classical hydraulic jump

description: This dataset contains results from Large-Eddy Simulations of a classical hydraulic jump at Fr=2. It accompanies the following article:<br>Kindly, cite the article if you make use of the data.
DOI: 10.6084/m9.figshare.12593345
title: Supplementary Material for: RBM5 Acts as Tumor Suppressor in Medulloblastoma through Regulating Wnt/β-Catenin Signaling

description: <b><i>Introduction:</i></b> <i>RBM5</i> acts as a tumor suppressor gene in lung and breast cancers; however, its role in the pathogenesis of medulloblastoma (MB) remains unclear. We previously identified 4 RBM5 mutations in whole exome sequencing analysis of 40 MB patients. This study examined the role of RBM5 in MB progression. <b><i>Methods:</i></b> The expression patterns of RBM5 in tissues of 40 MB patients were analyzed using immunohistochemistry. Associations between RBM5 expression and overall survival (OS) were evaluated using Kaplan-Meier analysis. The RBM5 role in Daoy cells’ proliferation, migration, and Wnt/β-catenin signaling was analyzed after RBM5 knockdown and overexpression. <b><i>Results:</i></b> The expression level of <i>RBM5</i> mRNA and protein was significantly lower in MB than that in adjacent normal control tissues, and low RBM5 expression was significantly associated with reduced OS (<i>p</i> = 0.034). RBM5 knockdown induced Daoy and ONS-76 cells proliferation, while RBM5 overexpression repressed cell proliferation and migration in vitro (all <i>p</i> &lt; 0.05). β-Catenin, LEF1, and cyclin D1 mRNA levels were upregulated, while DKK1 expression was downregulated in Daoy cells following RBM5 knockdown. <b><i>Conclusion:</i></b> RBM5 may function as a tumor suppressor in MB by regulating Wnt/β-catenin signaling, and its reduced expression is associated with lower OS.
DOI: 10.6084/m9.figshare.12593348.v1
title: Socioeconomic and soft drink consumption among adults in Cambodia

description: This survey was conducted in Cambodia. The title of the study is the association between socioeconomic and soft drink consumption among adults in Cambodia<br>
DOI: 10.6084/m9.figshare.12593357.v1
title: Methane Emissions from Riparian Zones Formed by Sediment Deposition in Hydropower Reservoirs

description: This study was conducted in a riparian zone on a sediment deposited island inside Manwan Reservoir on the upper Mekong River, which is not directly disturbed by riverbank runoff. Spatial patterns of methane emissions across the island were analyzed by measuring methane fluxes at seventeen sites on the island and eight reference sites in the adjacent reservoir. All the measurements were conducted in triplicate at each site.Methane fluxes were measured using the static chamber method (Duchemin et al., 1999). The plexiglass chamber consisted of a 6.28-L cylinder (20 cm in diameter, 20 cm in height), an outlet for gas collection, a pressure-equilibrium tube (3 mm in diameter, 20 cm in length) and a removable Styrofoam. The outlet of the chamber was open during the chamber deployment, and was left to stand for 20 min to completely equilibrate with ambient pressure outside before sample collection. During gas collection in the reservoir, the chamber was fitted with the Styrofoam, which maintained the upper closed portion of the chamber about 10 cm above the water surface (Figure S3), and the measurements were conducted in an anchored boat. During gas collection on the island, a collar was installed in each site a few days before the measurements. Gas samples (20 mL) were collected every 10 min over a 40-min period using a 25-mL polypropylene syringe and were injected into a 12-mL pre-evacuated Exetainer® vial (839 W, Labco, UK) for storage until analysis. Exetainer® vials have been evaluated for storage of gas samples and they can limit sample loss to an insignificant amount for at least three months. Gas samples were analyzed by a gas chromatograph (7890B, Agilent Technologies, USA; the detection limit is 0.1ppmv at 25°C). Gas fluxes were calculated using linear regression based on the concentration changes of five samples over time. Linear regression correlation coefficients of less than 0.95 were not accepted for further calculations (Duchemin et al., 1999).The triple measurements were conducted by placing three individual chambers at each site, and nine chambers were employed by three work groups to finish measurements as quickly as possible. Methane fluxes at these sampling sites were used to feature spatial patterns of methane emission across the island and the adjacent reservoir using simple spline tension interpolator (Arcgis v10.2, ESRI) based on the assumed smoothness of variation (Immerzeel et al., (2009).
DOI: 10.6084/m9.figshare.12593480.v3
title: LES of a classical hydraulic jump

description: This dataset contains results from Large-Eddy Simulations of a classical hydraulic jump at Fr=2. It accompanies the following article:<br>T. Mukha, S. K. Almeland, and R. E. Bensow. LES of a classical hydraulic jump: Influence of modelling parameters on the predictive accuracy. 2020.<br><br>Kindly, cite the article if you make use of the data.<br>The data for each case in the article is found in the associated zip archive. For example, for the simulations using MULES, dx2 and 10% upwinding, the name is mules_dx2_lu10.zip.Inside each such zip file there is the following:- A .vtm file containing full averaged 2d fields. Can be opened with paraview or turbulucid.<br>- The r_z_* files containing two-point correlations in the spanwise direction.- The spectra directory containing the computed time-spectra.- The probes_* files, containing the probes data which was used to compute the spectra and the acfs.- The probes_resampled_* files, containing the same probe data but resampled to evenly distributed time-values, with 0.001 s between the samples.<br>The leaked_air.hdf5 file contains the sampled signals for the volume of leaked air, for all cases.<br>The leaked_air_resampled.hdf5 contains the same data but resampled to evenly distributed time-values, with 0.001 s between the samples.<br>The cases directory contains OpenFOAM setup files for simulations on all four meshes. To run the cases, blockMesh should first be used to construct the mesh followed by topoSet to define the cellSet used for sampling the volume of leaked air. To reproduce a particular case, adjust the settings wit respect to the amount of upwinding and then run interFoam for MULES and interIsoFoam for the isoAdvector VoF. OpenFOAM v1806 is used in the paper, but later versions should, in principle, also work.<br>Finally, the two interface_animation_data archives contains a series of VTK files containing the air-water interface surface, which can be used to look at the interface dynamics. The data is extracted from the benchmark simulation.<br><br><br>
DOI: 10.6084/m9.figshare.12593291
title: COVID-19 Global Testing Statistics

description: Number of SARS-CoV-2 tests conducted per country/province around the world<br>
DOI: 10.6084/m9.figshare.12593282
title: Supplementary Material for: Divergent Roles of <b><i>miR-3162-3p</i></b> in Pulmonary Inflammation in Normal and Asthmatic Mice as well as Antagonism of <b><i>miR-3162-3p</i></b> in Asthma Treatment

description: MicroRNA (miRNA) mimics or antagomirs hold great promise for asthma treatment compared with glucocorticoids as mainstay therapy for asthma. But the role of miRNA in regulating asthmatic inflammation is largely unclear. We previously reported that <i>miR-3162-3p</i> in the peripheral blood of children with asthma was obviously upregulated compared to that in healthy children. This study aimed to elucidate the role of <i>miR-3162-3p</i> in pulmonary inflammation in normal and asthmatic mice as well as preliminarily explore the potential of <i>miR-3162-3p</i> antagomir in asthma treatment. A noninvasive whole-body plethysmograph measured airway responsiveness. Both qRT-PCR and Western blot were used to detect the expression of miRNA, mRNA, or protein. Cells in bronchoalveolar lavage fluid were counted by platelet counting and Wright’s staining. Inflammatory infiltration and mucus secretion were identified by hematoxylin and eosin and periodic acid-Schiff staining, respectively. Cytokines in the lungs were detected by ELISA. The <i>miR-3162-3p</i> mimic intraperitoneally administered to normal mice decreased β-catenin levels in the lungs without obviously altering the lung histology and cytokine levels. Antagonizing <i>miR-3162-3p</i> in ovalbumin-induced asthmatic mice effectively alleviated the typical features of asthma, such as airway hyper­responsiveness, airway inflammation, and Th1/Th2 cytokine imbalance, and concomitantly rescued the total and active β-catenin expression. Collectively, we discovered divergent roles of <i>miR-3162-3p</i> in lung inflammation between normal and asthmatic mice. The anti-inflammatory effects of the <i>miR-3162-3p</i> antagomir were comparable to those of glucocorticoid treatment. Our study helped in understanding the contribution of miRNAs to the pathogenesis of asthma.
DOI: 10.6084/m9.figshare.12593291.v1
title: COVID-19 Global Testing Statistics

description: Number of SARS-CoV-2 tests conducted per country/province around the world<br>
DOI: 10.6084/m9.figshare.12593300
title: SARS-CoV-2 genomic variability

description: Genetic variability of sequences in GISAID for SARS-CoV-2 per country globally<br>
DOI: 10.6084/m9.figshare.12593300.v1
title: SARS-CoV-2 genomic variability

description: Genetic variability of sequences in GISAID for SARS-CoV-2 per country globally<br>
DOI: 10.6084/m9.figshare.12593282.v1
title: Supplementary Material for: Divergent Roles of <b><i>miR-3162-3p</i></b> in Pulmonary Inflammation in Normal and Asthmatic Mice as well as Antagonism of <b><i>miR-3162-3p</i></b> in Asthma Treatment

description: MicroRNA (miRNA) mimics or antagomirs hold great promise for asthma treatment compared with glucocorticoids as mainstay therapy for asthma. But the role of miRNA in regulating asthmatic inflammation is largely unclear. We previously reported that <i>miR-3162-3p</i> in the peripheral blood of children with asthma was obviously upregulated compared to that in healthy children. This study aimed to elucidate the role of <i>miR-3162-3p</i> in pulmonary inflammation in normal and asthmatic mice as well as preliminarily explore the potential of <i>miR-3162-3p</i> antagomir in asthma treatment. A noninvasive whole-body plethysmograph measured airway responsiveness. Both qRT-PCR and Western blot were used to detect the expression of miRNA, mRNA, or protein. Cells in bronchoalveolar lavage fluid were counted by platelet counting and Wright’s staining. Inflammatory infiltration and mucus secretion were identified by hematoxylin and eosin and periodic acid-Schiff staining, respectively. Cytokines in the lungs were detected by ELISA. The <i>miR-3162-3p</i> mimic intraperitoneally administered to normal mice decreased β-catenin levels in the lungs without obviously altering the lung histology and cytokine levels. Antagonizing <i>miR-3162-3p</i> in ovalbumin-induced asthmatic mice effectively alleviated the typical features of asthma, such as airway hyper­responsiveness, airway inflammation, and Th1/Th2 cytokine imbalance, and concomitantly rescued the total and active β-catenin expression. Collectively, we discovered divergent roles of <i>miR-3162-3p</i> in lung inflammation between normal and asthmatic mice. The anti-inflammatory effects of the <i>miR-3162-3p</i> antagomir were comparable to those of glucocorticoid treatment. Our study helped in understanding the contribution of miRNAs to the pathogenesis of asthma.
DOI: 10.6084/m9.figshare.12593255
title: JVASP-9114 to JVASP-10308

description: JARVIS-DFT input/output files<br>
DOI: 10.6084/m9.figshare.12593258
title: JVASP-10316 to JVASP-12384

description: JARVIS-DFT input/output files
DOI: 10.6084/m9.figshare.12593255.v1
title: JVASP-9114 to JVASP-10308

description: JARVIS-DFT input/output files<br>
DOI: 10.6084/m9.figshare.12593258.v1
title: JVASP-10316 to JVASP-12384

description: JARVIS-DFT input/output files
DOI: 10.6084/m9.figshare.12593225
title: Supplementary Material for: The Prospective Studies of Atherosclerosis (Proof-ATHERO) Consortium: Design and Rationale

description: Atherosclerosis – the pathophysiological mechanism shared by most cardiovascular diseases – can be directly or indirectly assessed by a variety of clinical tests including measurement of carotid intima-media thickness, carotid plaque, ­ankle-brachial index, pulse wave velocity, and coronary ­artery calcium. The Prospective Studies of Atherosclerosis ­(Proof-ATHERO) consortium (https://clinicalepi.i-med.ac.at/research/proof-athero/) collates de-identified individual-participant data of studies with information on atherosclerosis measures, risk factors for cardiovascular disease, and incidence of cardiovascular diseases. It currently comprises 74 studies that involve 106,846 participants from 25 countries and over 40 cities. In summary, 21 studies recruited participants from the general population (<i>n</i> = 67,784), 16 from high-risk populations (<i>n</i> = 22,677), and 37 as part of clinical trials (<i>n</i> = 16,385). Baseline years of contributing studies range from April 1980 to July 2014; the latest follow-up was until June 2019. Mean age at baseline was 59 years (standard deviation: 10) and 50% were female. Over a total of 830,619 person-years of follow-up, 17,270 incident cardiovascular events (including coronary heart disease and stroke) and 13,270 deaths were recorded, corresponding to cumulative incidences of 2.1% and 1.6% per annum, respectively. The consortium is coordinated by the Clinical Epidemiology Team at the Medical University of Innsbruck, Austria. Contributing studies undergo a detailed data cleaning and harmonisation procedure before being incorporated in the Proof-ATHERO central database. Statistical analyses are being conducted according to pre-defined analysis plans and use established methods for individual-participant data meta-analysis. Capitalising on its large sample size, the multi-institutional collaborative Proof-ATHERO consortium aims to better characterise, understand, and predict the development of atherosclerosis and its clinical consequences.
DOI: 10.6084/m9.figshare.12593171
title: Additional file 8 of Secreted breast tumor interstitial fluid microRNAs and their target genes are associated with triple-negative breast cancer, tumor grade, and immune infiltration

description: Additional file 8: Table S4. Intramodular Connectivity. The table contains results from the intramodular connectivity analysis, including gene name, the module a gene belonged to, and interconnectivity scores; kTotal (whole network), kWithin (within module), kOut = kTotal-kWithin, and kDiff = kWithin-kOut. Additionally, the table includes information about whether a gene was annotated as an oncogene | tumor suppressor gene | dual role gene | driver gene | fusion gene in the COSMIC census gene set, or in the filtered results of CancerMine text-mining. The columns “DE Gene” and “Gene from Network” denote if a gene was found to be differentially expressed in any comparison and whether it was included in one of the miRNA-mRNA network, respectively. The genes are ranked based on interconnectivity within modules.