cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12100755
title: Dogs and cats oviductal extracellular vesicles proteomics

description: Ultraperformance liquid chromatography and tandem mass spectrometry (UPLC-MS/MS) were used to identify the protein content of dogs and cats oviductal extracellular vesicles among the different estrus stages: mid-late luteal (LL); early luteal (EL); late follicular (LF); and early follicular (EF).
DOI: 10.6084/m9.figshare.12100761
title: Data_Back_to_reality

description: data sets of throwing task in virtual and real
DOI: 10.6084/m9.figshare.12100761.v1
title: Data_Back_to_reality

description: data sets of throwing task in virtual and real
DOI: 10.6084/m9.figshare.12100758.v2
title: Bajczyk .bam files

description: bam files for visualisation of RNA-seq data in IGV or other genome browser
DOI: 10.6084/m9.figshare.12100758.v1
title: Bajczyk .bam files

description: bam files for visualisation of RNA-seq data in IGV or other genome browser
DOI: 10.6084/m9.figshare.12100698
title: Spherical Regression Under Mismatch Corruption With Application to Automated Knowledge Translation

description: <b>Motivated by a series of applications in data integration, language translation, bioinformatics, and computer vision, we consider spherical regression with two sets of unit-length vectors when the data are corrupted by a small fraction of mismatch in the response-predictor pairs. We propose a three-step algorithm in which we initialize the parameters by solving an orthogonal Procrustes problem to estimate a translation matrix</b>W<b>ignoring the mismatch. We then estimate a mapping matrix aiming to correct the mismatch using hard-thresholding to induce sparsity, while incorporating potential group information. We eventually obtain a refined estimate for</b>W<b>by removing the estimated mismatched pairs. We derive the error bound for the initial estimate of</b>W<b>in both fixed and high-dimensional setting. We demonstrate that the refined estimate of</b>W<b>achieves an error rate that is as good as if no mismatch is present. We show that our mapping recovery method not only correctly distinguishes one-to-one and one-to-many correspondences, but also consistently identifies the matched pairs and estimates the weight vector for combined correspondence. We examine the finite sample performance of the proposed method via extensive simulation studies, and with application to the unsupervised translation of medical codes using electronic health records data. Supplementary materials for this article are available online.</b>
DOI: 10.6084/m9.figshare.12100623
title: Dataset to the study ‘Faster life history strategy manifests itself by lower age at menarche, higher sexual desire, and earlier reproduction in people with worse health’

description: The dataset contains variables sex (female = 0, male = 1), age, current partnership, church membership, height, size of place of residence, socioeconomic status, education, Rh negativity, the sickness index (and 11 health-related variables which were used to calculate the index), age at menarche, age at first sexual intercourse, sexual desire (and three variables from the Revised Sociosexual Orientation Inventory which were used to calculate sexual desire), sexual activity, number of sexual partners, and number of children. <br>On this set, we tested a hypothesis according to which impairment of individual health serves as a signal for switching to a faster life strategy. <br>
DOI: 10.6084/m9.figshare.12100698.v2
title: Spherical Regression Under Mismatch Corruption With Application to Automated Knowledge Translation

description: <b>Motivated by a series of applications in data integration, language translation, bioinformatics, and computer vision, we consider spherical regression with two sets of unit-length vectors when the data are corrupted by a small fraction of mismatch in the response-predictor pairs. We propose a three-step algorithm in which we initialize the parameters by solving an orthogonal Procrustes problem to estimate a translation matrix</b>W<b>ignoring the mismatch. We then estimate a mapping matrix aiming to correct the mismatch using hard-thresholding to induce sparsity, while incorporating potential group information. We eventually obtain a refined estimate for</b>W<b>by removing the estimated mismatched pairs. We derive the error bound for the initial estimate of</b>W<b>in both fixed and high-dimensional setting. We demonstrate that the refined estimate of</b>W<b>achieves an error rate that is as good as if no mismatch is present. We show that our mapping recovery method not only correctly distinguishes one-to-one and one-to-many correspondences, but also consistently identifies the matched pairs and estimates the weight vector for combined correspondence. We examine the finite sample performance of the proposed method via extensive simulation studies, and with application to the unsupervised translation of medical codes using electronic health records data. Supplementary materials for this article are available online.</b>
DOI: 10.6084/m9.figshare.12100620
title: Bajczyk Fig. S6 and S5

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12100623.v1
title: Dataset to the study ‘Faster life history strategy manifests itself by lower age at menarche, higher sexual desire, and earlier reproduction in people with worse health’

description: The dataset contains variables sex (female = 0, male = 1), age, current partnership, church membership, height, size of place of residence, socioeconomic status, education, Rh negativity, the sickness index (and 11 health-related variables which were used to calculate the index), age at menarche, age at first sexual intercourse, sexual desire (and three variables from the Revised Sociosexual Orientation Inventory which were used to calculate sexual desire), sexual activity, number of sexual partners, and number of children. <br>On this set, we tested a hypothesis according to which impairment of individual health serves as a signal for switching to a faster life strategy. <br>
DOI: 10.6084/m9.figshare.12100554
title: Table 11 revised. Row data water quality parameters of reared gurami sago

description: weekly recorded of water quality parameter<br>
DOI: 10.6084/m9.figshare.12100566
title: Bajczyk Fig. S1

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12100563
title: Additive maternal responses to temperature and water availability during pregnancy in a viviparous lizard

description: Data for Brusch et al Z. vivipara manuscript
DOI: 10.6084/m9.figshare.12100566.v1
title: Bajczyk Fig. S1

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12098775
title: Bajczyk Fig S2

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12098772
title: Bajczyk Fig. 11

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12098775.v1
title: Bajczyk Fig S2

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12100563.v1
title: Additive maternal responses to temperature and water availability during pregnancy in a viviparous lizard

description: Data for Brusch et al Z. vivipara manuscript
DOI: 10.6084/m9.figshare.12098772.v1
title: Bajczyk Fig. 11

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12098595
title: anderson_refs

description: search results from systematic review used for a library carpentry lesson on r package litsearchr
DOI: 10.6084/m9.figshare.12098592
title: Raw data and initial results for "A wealth of genotype-specific proteoforms fine-tunes hemoglobin scavenging by haptoglobin"

description: This dataset contains raw mass photometry, intact mass MS, top-down MS, and native MS data, as well as some intial results, including processed mass photometry data and deconvoluted lists from intact mass MS. These data were used to make figures and to draw conclusions in "A wealth of genotype-specific proteoforms fine-tunes hemoglobin scavenging by haptoglobin".
DOI: 10.6084/m9.figshare.12098583
title: Inference Labels Image Dataset

description: This dataset contains the 16 bit of the inference labels for the nuclei that were used both in training (Labelled as "Original") or inference (Labelled as "Biological" or "Technical) for the MRCNN and FPN2-WS networks
DOI: 10.6084/m9.figshare.12098595.v1
title: anderson_refs

description: search results from systematic review used for a library carpentry lesson on r package litsearchr
DOI: 10.6084/m9.figshare.12098565
title: Bajczyk Fig. 10

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12098583.v1
title: Inference Labels Image Dataset

description: This dataset contains the 16 bit of the inference labels for the nuclei that were used both in training (Labelled as "Original") or inference (Labelled as "Biological" or "Technical) for the MRCNN and FPN2-WS networks
DOI: 10.6084/m9.figshare.12098565.v1
title: Bajczyk Fig. 10

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12098463
title: Bajczyk Fig. 5 and S3

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12098475
title: Bajczyk Fig. 8-9, S6-S10

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12098475.v1
title: Bajczyk Fig. 8-9, S6-S10

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12098307
title: Politics and Porn - Data Set

description: Through a discourse analysis of 124 articles, we point out the varying ways that some of the problems presented by deepfakes are valued as more important than others.
DOI: 10.6084/m9.figshare.12098286
title: Bajczyk Fig. 7

description: raw data collection
DOI: 10.6084/m9.figshare.12098274
title: Bajczyk Fig. 3

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12098277
title: Bajczyk Fig. 4

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12098274.v1
title: Bajczyk Fig. 3

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12098277.v1
title: Bajczyk Fig. 4

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12098286.v1
title: Bajczyk Fig. 7

description: raw data collection
DOI: 10.6084/m9.figshare.12098265
title: Bajczyk Fig. 2

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12098265.v1
title: Bajczyk Fig. 2

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12098154
title: Effects of exposure time and ratio of irradiated larvae from three medfly strains on progeny yield in <i>Diachasmimorpha longicaudata</i> (Hymenoptera: Braconidae) mass rearing

description: An augmentative biological control strategy against <i>Ceratitis capitata</i> (= medfly) in fruit-producing irrigated-valleys of San Juan, central-western Argentina, has been recently implemented by the San Juan Fruit Fly Control and Eradication Program. The Asian-native parasitoid <i>Diachasmimorpha longicaudata</i> is currently reared at the San Juan Medfly and Parasitoids Mass Rearing Facility for this purpose. In this regard, the objective of this study was to evaluate adult emergence and offspring sex ratio to improve parasitoid production. Three medfly strains at different host larvae densities and exposure times to female parasitoids were assessed. Prevalence of superparasitism was also considered. Three parasitoid population lines were used in the trials: one reared on medfly larvae of the Vienna-8 temperature-sensitive lethal (tsl) genetic sexing strain without inversion, and the other two on larvae of biparental medfly strains native to San Juan (central-western Argentina) and Tucumán (northwestern Argentina). Gamma-irradiated 6 d-old larvae (early third-instars) of each medfly strain were exposed to parasitoids for 30, 60, 90, and 120 min at 3:1, 6:1, and 9:1 host/parasitoid ratios. The Vienna-8 <i>C. capitata</i> strain was as efficient in producing parasitoids as both biparental native strains. Medfly larvae exposed to 10 female parasitoids for a relatively long time (1.30 hrs) at a high ratio (6–9:1) of host to parasitoid were enough to achieve the highest mean adult emergence (50–60%) and a female-biased offspring sex ratio. Superparasitism positively influenced female parasitoid production. These findings may be used to develop a more cost-effective mass rearing method for <i>D. longicaudata</i>.
DOI: 10.6084/m9.figshare.12098154.v1
title: Effects of exposure time and ratio of irradiated larvae from three medfly strains on progeny yield in <i>Diachasmimorpha longicaudata</i> (Hymenoptera: Braconidae) mass rearing

description: An augmentative biological control strategy against <i>Ceratitis capitata</i> (= medfly) in fruit-producing irrigated-valleys of San Juan, central-western Argentina, has been recently implemented by the San Juan Fruit Fly Control and Eradication Program. The Asian-native parasitoid <i>Diachasmimorpha longicaudata</i> is currently reared at the San Juan Medfly and Parasitoids Mass Rearing Facility for this purpose. In this regard, the objective of this study was to evaluate adult emergence and offspring sex ratio to improve parasitoid production. Three medfly strains at different host larvae densities and exposure times to female parasitoids were assessed. Prevalence of superparasitism was also considered. Three parasitoid population lines were used in the trials: one reared on medfly larvae of the Vienna-8 temperature-sensitive lethal (tsl) genetic sexing strain without inversion, and the other two on larvae of biparental medfly strains native to San Juan (central-western Argentina) and Tucumán (northwestern Argentina). Gamma-irradiated 6 d-old larvae (early third-instars) of each medfly strain were exposed to parasitoids for 30, 60, 90, and 120 min at 3:1, 6:1, and 9:1 host/parasitoid ratios. The Vienna-8 <i>C. capitata</i> strain was as efficient in producing parasitoids as both biparental native strains. Medfly larvae exposed to 10 female parasitoids for a relatively long time (1.30 hrs) at a high ratio (6–9:1) of host to parasitoid were enough to achieve the highest mean adult emergence (50–60%) and a female-biased offspring sex ratio. Superparasitism positively influenced female parasitoid production. These findings may be used to develop a more cost-effective mass rearing method for <i>D. longicaudata</i>.
DOI: 10.6084/m9.figshare.12098130
title: Bajczyk Fig. 1

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12098130.v1
title: Bajczyk Fig. 1

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12098055
title: Metadata record for: PTB-XL, a large publicly available Electrocardiography Dataset

description: This dataset contains key characteristics about the data described in the Data Descriptor PTB-XL, a large publicly available Electrocardiography Dataset. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12098055.v1
title: Metadata record for: PTB-XL, a large publicly available Electrocardiography Dataset

description: This dataset contains key characteristics about the data described in the Data Descriptor PTB-XL, a large publicly available Electrocardiography Dataset. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12097815
title: Computational investigation on effect of mutations in PCNA resulting in structural perturbations and inhibition of mismatch repair pathway

description: From bacteria to mammals, DNA mismatch repair (MMR) pathway plays an essential role in eliminating mismatched nucleotides and insertion-deletion mismatches during the process of DNA replication. Among many of the proteins which participate in the mismatch repair process, proliferating cell nuclear antigen (PCNA) remains the principal conductor at the replication fork. The pol30-201 and pol30-204 are the two mutated alleles which encode for C22Y and C81R mutant forms of PCNA proteins. We performed long term molecular dynamics (MD) simulations analysis (0.8 μs) to understand the dynamic behavior and alterations in the structure of wild type and mutated forms of PCNA at the atomic level. We observed changes in the structural characteristics like length, radius, rise per residue of alpha helices in both the mutated forms of PCNA. Apart from it, disfigurement of the charge distribution which effects binding with the dsDNA due to mutant C22Y and other structural perturbations were also seen in regions significant for the formation of a biologically active trimeric form of PCNA due to mutant C81R. Our analysis of native and mutated forms of PCNA provides an insight into the essential structural and functional features required for proper and well-coordinated DNA mismatch repair process and consequences of the mutation leading to an impaired process of MMR. These structural characteristics are fundamental for the MMR process and hence our analysis likely contributes to or presents the novel mechanism involved in the process of MMR. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.12097812
title: Dehydration entropy drives liquid-liquid phase separation by molecular crowding.zip

description: Complex coacervation driven liquid-liquid phase separation (LLPS) of biopolymers has been attracting attention as a novel phase in living cells. Studies of LLPS in this context are typically of proteins harboring chemical and structural complexity, leaving unclear what property is fundamental to complex coacervation versus protein-specific. This study focus on the role of polyethylene glycol (PEG)—a widely used molecular crowder—in LLPS. Significantly, entropy-driven LLPS was recapitulated with charged polymers lacking hydrophobicity and sequence complexity, and its propensity dramatically enhanced by PEG. Experimental and field-theoretic simulation results are consistent with PEG driving LLPS by dehydration of polymers, and show that PEG exerts its effect without partitioning into the dense coacervate phase. It is then up to biology to impose additional variations of functional significance to the LLPS of biological systems.<b></b>
DOI: 10.6084/m9.figshare.12097815.v1
title: Computational investigation on effect of mutations in PCNA resulting in structural perturbations and inhibition of mismatch repair pathway

description: From bacteria to mammals, DNA mismatch repair (MMR) pathway plays an essential role in eliminating mismatched nucleotides and insertion-deletion mismatches during the process of DNA replication. Among many of the proteins which participate in the mismatch repair process, proliferating cell nuclear antigen (PCNA) remains the principal conductor at the replication fork. The pol30-201 and pol30-204 are the two mutated alleles which encode for C22Y and C81R mutant forms of PCNA proteins. We performed long term molecular dynamics (MD) simulations analysis (0.8 μs) to understand the dynamic behavior and alterations in the structure of wild type and mutated forms of PCNA at the atomic level. We observed changes in the structural characteristics like length, radius, rise per residue of alpha helices in both the mutated forms of PCNA. Apart from it, disfigurement of the charge distribution which effects binding with the dsDNA due to mutant C22Y and other structural perturbations were also seen in regions significant for the formation of a biologically active trimeric form of PCNA due to mutant C81R. Our analysis of native and mutated forms of PCNA provides an insight into the essential structural and functional features required for proper and well-coordinated DNA mismatch repair process and consequences of the mutation leading to an impaired process of MMR. These structural characteristics are fundamental for the MMR process and hence our analysis likely contributes to or presents the novel mechanism involved in the process of MMR. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.12097776
title: Metadata record for: Long-term population monitoring of a territorial forest raptor species

description: This dataset contains key characteristics about the data described in the Data Descriptor Long-term population monitoring of a territorial forest raptor species. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12097788
title: blaCTX-M antibiotic resistance genes, fecal indicator organisms, general water characteristics and nutrient concentrations Lahn River

description: Concentrations of <i>bla</i><sub>CTX-M </sub>antibiotic resistance genes, fecal indicator organisms <i>Escherichia coli</i>, intestinal enterococci and somatic coliphages as well as general water characteristics and nutrient concentrations were quantified weekly over a 12-month period in Lahn River surface water grab samples at two sampling sites (Nievern and Obernhof). Concentrations of <i>bla</i><sub>CTX-M</sub> antibiotic resistance genes were quantified using quantitative real-time PCR according to Marti et al. (2013). Data of fecal indicator organisms (i.e. <i>Escherichia coli</i>, intestinal enterococci and somatic coliphages), general water characteristics and nutrient concentrations were obtained from Herrig et al. (2015). <i>Escherichia coli</i>, intestinal enterococci and somatic coliphages were quantified according to standard methods ISO 9308-3, ISO 7899-2, and ISO 10705-2. General water characteristics including water temperature, specific conductivity, pH, turbidity, dissolved oxygen and chlorophyll-<i>a</i> were measured in situ with a YSI 6600 V2 multiparameter sensor (YSI, USA). Quantification of nutrient concentrations relied on spectrophotometric measurements (Xion 500, Hach-Lange, Germany) by ready-to-use cuvette tests (Hach-Lange, Germany).
DOI: 10.6084/m9.figshare.12097776.v1
title: Metadata record for: Long-term population monitoring of a territorial forest raptor species

description: This dataset contains key characteristics about the data described in the Data Descriptor Long-term population monitoring of a territorial forest raptor species. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12097692
title: Phylogenetic Methods From "The evolution of Puf superfamily proteins for rRNA maturation and mRNA translational regulation across the tree of eukaryotes."

description: Please find enclosed a total of five files per gene examined: <br><br># unaligned dataset<br>*.fasta<br><br># mafft-linsi aligned dataset*.mafft.fasta<br># gappyout masked alignement*.mafft.gappyout.fasta<br># alrt/ultrafast bootstrap maximum-likelihood tree<br>*..mafft.gappyout.*MODEL*.alrt.ultrafastBS.tre<br># non-parametric bootstrap/transfer bootstrap expectation*..mafft.gappyout.*MODEL*.PMSF_TBE.tre<br>