cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.id0rkm
title: Occurrence Download

description: A dataset containing 7230 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Didelphis marsupialis Linnaeus, 1758"
 ]
}

 The dataset includes 7230 records from 213 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032487-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mvku79
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scopula pulchellata (Fabricius, 1794)"
 ]
}

 The dataset includes 72 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189750-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y6s4my
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhynchospora cacuminicola Gale"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189751-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.faatmz
title: Occurrence Download

description: A dataset containing 161017 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2023-10-30",
 "EventDate is less than or equal to 2023-11-29",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 161017 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006420-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f6fvq9
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-117.6 32.534,-116.079 32.534,-116.079 33.506,-117.6 33.506,-117.6 32.534))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Emys marmorata Baird & Girard, 1852"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0340600-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.per74c
title: Occurrence Download

description: A dataset containing 993 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypera postica (L.Gyllenhal, 1813)"
 ]
}

 The dataset includes 993 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001569-150912100344238/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8mxgyr
title: Occurrence Download

description: A dataset containing 5153 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hamamelis L."
 ]
}

 The dataset includes 5153 records from 149 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001569-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.knkmkk
title: Occurrence Download

description: A dataset containing 1181365 species occurrences available in GBIF matching the query:
(Query is too complex. Can be viewed on the landing page)

 The dataset includes 1181365 records from 1629 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005340-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ycymfm
title: Occurrence Download

description: A dataset containing 5840 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is one of (United States of America, Canada)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (d9699a79-4736-45c2-925c-f4033ac67d52, 939ed180-aa7b-11db-8edf-b8a03c50a862, a41250f0-7c3e-11d8-a19c-b8a03c50a862, b542788f-0dc2-4a2b-b652-fceced449591, ff418020-1d67-11d9-8435-b8a03c50a862, c3ad790a-d426-4ac1-8e32-da61f81f0117, b4640710-8e03-11d8-b956-b8a03c50a862, 8edbbde0-055e-11d8-b850-b8a03c50a862, 5ffa575c-fcd4-4583-9611-545f67b04316)",
 "TaxonKey is Canis lupus Linnaeus, 1758"
 ]
}

 The dataset includes 5840 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000531-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15118321
title: A stochastic ratchet during genome streamlining can commit insect endosymbionts to a parasitic or mutualistic fate

description: This is the dataset accompanying the preprint "A stochastic ratchet during genome streamlining can commit insect endosymbionts to a parasitic or mutualistic fate" (https://www.biorxiv.org/content/10.1101/2025.04.10.648247v1) by Pranas Grigaitis, Bas Teusink, and Adria C. LeBoeuf. Please contact Pranas Grigaitis (p dot grigaitis at vu dot nl) for any further information on the dataset.

 

Abstract

Many arthropods, including insects, harbor endosymbiotic bacteria. As bacteria transitioned to live inside host cells, free-living bacterial ancestors of endosymbionts reduced their genomes in a process known as streamlining. Contemporary endosymbioses represent at least two distinct life strategies: endosymbionts either become unilaterally dependent on host-derived resources (uni-obligate) or enter bidirectionally obligate mutualistic relationships (bi-obligate endosymbiosis). It is an open question whether these paths taken by free-living bacteria can be sequential, or alternatively, if commitment takes place early, making these strategies mutually exclusive. In this study, we quantified metabolic capacity of different endosymbionts to contextualize genome streamlining in terms of organismal function. We show that uni-obligate endosymbionts of insects have lost substantial parts of their metabolic capacity that are present both in free-living bacteria and bi-obligate endosymbionts. On the contrary, genomes of uni-obligate endosymbionts contain more genes which can be attributed to scavenging host resources. In sum, we challenge the existing notion that bi-obligate endosymbionts have emerged from uni-obligate ones, and rather, propose a stochastic ratchet model: in early stages of endosymbiosis, bacteria get locked into either a more mutualistic or more parasitic relationship with the host depending on the first losses during streamlining.
DOI: 10.5281/zenodo.15118322
title: A stochastic ratchet during genome streamlining can commit insect endosymbionts to a parasitic or mutualistic fate

description: This is the dataset accompanying the preprint "A stochastic ratchet during genome streamlining can commit insect endosymbionts to a parasitic or mutualistic fate" (https://www.biorxiv.org/content/10.1101/2025.04.10.648247v1) by Pranas Grigaitis, Bas Teusink, and Adria C. LeBoeuf. Please contact Pranas Grigaitis (p dot grigaitis at vu dot nl) for any further information on the dataset.

 

Abstract

Many arthropods, including insects, harbor endosymbiotic bacteria. As bacteria transitioned to live inside host cells, free-living bacterial ancestors of endosymbionts reduced their genomes in a process known as streamlining. Contemporary endosymbioses represent at least two distinct life strategies: endosymbionts either become unilaterally dependent on host-derived resources (uni-obligate) or enter bidirectionally obligate mutualistic relationships (bi-obligate endosymbiosis). It is an open question whether these paths taken by free-living bacteria can be sequential, or alternatively, if commitment takes place early, making these strategies mutually exclusive. In this study, we quantified metabolic capacity of different endosymbionts to contextualize genome streamlining in terms of organismal function. We show that uni-obligate endosymbionts of insects have lost substantial parts of their metabolic capacity that are present both in free-living bacteria and bi-obligate endosymbionts. On the contrary, genomes of uni-obligate endosymbionts contain more genes which can be attributed to scavenging host resources. In sum, we challenge the existing notion that bi-obligate endosymbionts have emerged from uni-obligate ones, and rather, propose a stochastic ratchet model: in early stages of endosymbiosis, bacteria get locked into either a more mutualistic or more parasitic relationship with the host depending on the first losses during streamlining.
DOI: 10.15468/dl.rurujh
title: Occurrence Download

description: A dataset containing 24892 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apiaceae",
 "Geometry POLYGON((-102.65625 7.013667,-108.984375 15.961329,-103.359374 25.165173,-92.109374 28.304380,-80.15625 28.921631,-71.015625 25.799891,-63.984375 22.593726,-55.546874 15.961329,-45.703125 9.102096,-35.859375 -0.703107,-30.234375 -7.013667,-33.046875 -18.646245,-37.96875 -28.304380,-45.703125 -37.160316,-52.734375 -42.032974,-51.328125 -50.736455,-54.84375 -55.776573,-63.984375 -58.447732,-73.125 -58.813741,-79.453125 -55.379110,-83.671875 -47.517200,-79.453125 -35.460669,-80.15625 -24.527134,-85.78125 -15.961329,-97.03125 -5.615985,-99.843749 -1.406108,-99.843749 -1.406108,-102.65625 7.013667))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 24892 records from 253 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015330-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y28bz6
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Guarea crispa T.D.Penn."
 ]
}

 The dataset includes 29 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0165779-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g6h27a
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodiola sherriffii H.Ohba"
 ]
}

 The dataset includes 13 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016558-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x2xf3b
title: Occurrence Download

description: A dataset containing 293 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((5.475 52.975,5.525 52.975,5.525 53.025,5.475 53.025,5.475 52.975))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 293 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0306246-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fddpwf
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arapatiella emarginata R.S.Cowan"
 ]
}

 The dataset includes 31 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015340-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mjprmr
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Adiantum semiorbiculatum Bonap."
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016609-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.the7qx
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CatalogNumber is MHNN-INSECTA-65.5908",
 "DatasetKey is MHNN Neuchâtel: Entomological Collection"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0298363-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ohrtxc
title: Occurrence Download

description: A dataset containing 328 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vitreorana Guayasamin, Castroviejo-Fisher, Trueb, Ayarzagüena, Rada & Vilà, 2009"
 ]
}

 The dataset includes 328 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015340-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ew5wrc
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodiola taohoensis S.H.Fu"
 ]
}

 The dataset includes 28 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016564-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mag8zs
title: Occurrence Download

description: A dataset containing 1340 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((5.475 52.925,5.525 52.925,5.525 52.975,5.475 52.975,5.475 52.925))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 1340 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0306247-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b6hcjk
title: Occurrence Download

description: A dataset containing 4716 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caricaceae",
 "Geometry POLYGON((-102.65625 7.013667,-108.984375 15.961329,-103.359374 25.165173,-92.109374 28.304380,-80.15625 28.921631,-71.015625 25.799891,-63.984375 22.593726,-55.546874 15.961329,-45.703125 9.102096,-35.859375 -0.703107,-30.234375 -7.013667,-33.046875 -18.646245,-37.96875 -28.304380,-45.703125 -37.160316,-52.734375 -42.032974,-51.328125 -50.736455,-54.84375 -55.776573,-63.984375 -58.447732,-73.125 -58.813741,-79.453125 -55.379110,-83.671875 -47.517200,-79.453125 -35.460669,-80.15625 -24.527134,-85.78125 -15.961329,-97.03125 -5.615985,-99.843749 -1.406108,-99.843749 -1.406108,-102.65625 7.013667))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4716 records from 153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015331-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8qvvdg
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isoetes fuliginosa R.L.Small & Hickey"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0165780-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dnmxwb
title: Occurrence Download

description: A dataset containing 381 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Sarcohyla bistincta (Cope, 1877)"
 ]
}

 The dataset includes 381 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043076-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.frjefr
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stellaria lanata Hook.fil. ex Edgew. & Hook.fil.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 38 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0321499-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r7umtc
title: Occurrence Download

description: A dataset containing 386 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bothrops asper (Garman, 1883)",
 "Country is Colombia"
 ]
}

 The dataset includes 386 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015332-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3hvtnx
title: Occurrence Download

description: A dataset containing 693531 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Quercus suber L."
 ]
}

 The dataset includes 693531 records from 302 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043228-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w476sy
title: Occurrence Download

description: A dataset containing 885 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Haddadus Hedges, Duellman & Heinicke, 2008"
 ]
}

 The dataset includes 885 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015332-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kseywg
title: Occurrence Download

description: A dataset containing 441 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trichiurus lepturus Linnaeus, 1758",
 "Year 1899-1950"
 ]
}

 The dataset includes 441 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016561-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tfdzg6
title: Occurrence Download

description: A dataset containing 160733 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rubus saxatilis L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 160733 records from 450 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043234-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m2culn
title: Occurrence Download

description: A dataset containing 1360 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dendrophryniscus Jiménez de la Espada, 1870"
 ]
}

 The dataset includes 1360 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015333-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nrpvpp
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithobates psilonota (Webb, 2001)"
 ]
}

 The dataset includes 79 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0286867-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sct38d
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Phytoseiulus persimilis collection records in a predator-prey system: Phytoseiulus persimilis (Acari: Phytoseiidae) and Tetranychus urticae (Acari: Tetranychidae)"
 ]
}

 The dataset includes 65 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043235-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7i2pfx
title: Occurrence Download

description: A dataset containing 4165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vulpes lagopus (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4165 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015334-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7tejsx
title: Occurrence Download

description: A dataset containing 3628 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((5.475 53.225,5.525 53.225,5.525 53.275,5.475 53.275,5.475 53.225))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 3628 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0306236-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.syetfx
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hymenophyllum saenzianum Gómez Pompa"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0165784-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.