cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7715985
title: Code and data for the anaylsis of Case study #1 and #2 - Attitudinal Space Framework

description: This is a folder that contains all the necessary material to replicate the analysis of the manuscript entitled "The Attitudinal Space Framework: Embracing the multidimensionality of attitudinal diversity" (Arbieu, U., Albrecht, J., Böhning-Gaese, K., Lehnen, L., Schleuning, M. & Mueller, T.). Case Study #1 is an analysis of affective polarization in the American electorate based on the ANES dataset (publicly available). "Traits_ANES_Pol2_88-08_V2.csv" contains the answers to the questionnaire (see supporting information of the manuscript for more details) and "Communities_ANES_Pol2_88-08_V2.csv" includes the distribution of respondents in the two partisan groups, twenty years apart. "US_Case_Study.R" is the R code used to conduct the analysis and produce the figures included in the manuscript and the supporting information. Case Study #2 is an analysis of attitudes towards wolves in Germany in regions with and without wolves (data previously published in Arbieu et al., 2019, see manuscript). "DE_Wolf_orig.csv" contains the answers to the questionnaire (see supporting information of the manuscript for more details) and "Communities_DE_Wolforig.csv" includes the distribution of respondents in the two regions. "Wolf_Case_Study.R" is the R code used to conduct the analysis and produce the figures included in the manuscript and the supporting information. Both scripts need the functions in the "multidimFD.R", which was produced by Sébastien Villéger, and downloaded from his website.
DOI: 10.5281/zenodo.7715984
title: Code and data for the anaylsis of Case study #1 and #2 - Attitudinal Space Framework

description: This is a folder that contains all the necessary material to replicate the analysis of the manuscript entitled "The Attitudinal Space Framework: Embracing the multidimensionality of attitudinal diversity" (Arbieu, U., Albrecht, J., Böhning-Gaese, K., Lehnen, L., Schleuning, M. & Mueller, T.). Case Study #1 is an analysis of affective polarization in the American electorate based on the ANES dataset (publicly available). "Traits_ANES_Pol2_88-08_V2.csv" contains the answers to the questionnaire (see supporting information of the manuscript for more details) and "Communities_ANES_Pol2_88-08_V2.csv" includes the distribution of respondents in the two partisan groups, twenty years apart. "US_Case_Study.R" is the R code used to conduct the analysis and produce the figures included in the manuscript and the supporting information. Case Study #2 is an analysis of attitudes towards wolves in Germany in regions with and without wolves (data previously published in Arbieu et al., 2019, see manuscript). "DE_Wolf_orig.csv" contains the answers to the questionnaire (see supporting information of the manuscript for more details) and "Communities_DE_Wolforig.csv" includes the distribution of respondents in the two regions. "Wolf_Case_Study.R" is the R code used to conduct the analysis and produce the figures included in the manuscript and the supporting information. Both scripts need the functions in the "multidimFD.R", which was produced by Sébastien Villéger, and downloaded from his website.
DOI: 10.21413/phebus_c404_c422_mercury_swingbys_count_rate_latmos
title: Observations of Mercury's exosphere with the visible channels of PHEBUS during the first two Mercury flybys with the BepiColombo mission

description: BepiColombo has already performed two flybys of Mercury, the first one on October 1st 2021 and the second one on June 23rd 2022. During both flybys, the visible channels of PHEBUS (Probing of Hermean Exosphere By Ultraviolet Spectroscopy) were activated. The channel c404 is centered at the emission line of potassium at 404 nm while the other channel, c422, is centered at the emission line of calcium at 422 nm. During the first flyby, the visible channels were on for 1 hour, starting half an hour before the closest approach. During the second flyby, the visible channels were activated for 1h15, starting a quarter of an hour before the closest approach. The boresight of PHEBUS was in a fixed direction with respect to the stars during the whole sequence, pointing close to the north ecliptic pole and almost tangential to the limb at the equator. We observed Mercury’s extended exosphere of Ca beyond ~10,000 km. We have detected additional species with the channel c404 but comparison with previous studies is unconclusive and further analysis will be necessary to identify this species. These datasets contain the total count rate recorded by PHEBUS visible channels as well as the associated dark count rate and the uncertainty for the total count rate. Each dataset also contains information to reconstruct the geometry of observation (Mercury and BepiColombo positions, PHEBUS boresight and Sun direction). Each flyby has its own dataset.
description: Product data level : partially calibrated data (level 1A)
description: https://phebus.projet.latmos.ipsl.fr/en/
description: https://www.esa.int/Science_Exploration/Space_Science/BepiColombo
description: Publications: [1] Chassefière, E., J-L. Maria, J-P. Goutail, E. Quémerais, F. Leblanc, S. Okano, I. Yoshikawa, O. Korablev, V. Gnedykh, G. Naletto, P. Nicolisi, M-G. Pelizzo, J-J. Correia, S. Gallet, C. Hourtoule, et al. PHEBUS : a double ultraviolet spectrometer to observe Mercury’s exosphere, Planet. Space Sci., 58, 201-223, (2010); "https://doi.org/10.1016/j.pss.2008.05.018" [2] Qumerais, E., J-Y. Chaufray, D. Koutroumpa, F. Leblanc, A. Reberac, B. Lustrement, C. Montaron, J-F. Mariscal, N. Rouanet, I. Yoshikawa, G. Murakami, K. Yoshioka, O. Korablev, D. Belyaev, M.G. Pelizzo, A. Corso, and P. Zuppella, PHEBUS on BepiColombo : Post-launch update and instrument performance, Space Sci. Rev., 216 :67, (2020); "https://doi.org/10.1007/s11214-020-00695-6"
DOI: 10.6084/m9.figshare.21326098
title: A qualitative study exploring how students’ conceptualisations of lifelong learning develop in an undergraduate medical training programme

description: There is currently a paucity of evidence regarding how medical undergraduate training influences students’ attitudes and skills for lifelong learning (LL). This study describes medical graduates’ conceptualisations of LL at the University of Dundee and proposes a provisional theory regarding related curriculum influences. Using a methodology informed by scientific realism, semi-structured interviews were employed to explore six graduating medical students’ conceptualisations of and preparedness for LL. Findings were thematically analysed and aligned with existing educational theories. Graduates characterised LL as a continual process which emphases reflection, responsibility for learning, and maintaining motivation. Their conceptualisations did not translate readily beyond professional medical practice. The strongest curriculum influences were experiences in the authentic clinical environment, use of learning portfolios, and the intercalation of a medical science degree. In the absence of formal teaching, medical students’ conceptualisations of LL develop in accordance with both the implicit prevailing professional narrative and from curriculum interventions which: increase their sense of relatedness with their community of practice; provide autonomy in learning; and engender a sense of responsibility to learn. This provisional theory could be valuable in guiding the teaching and assessment of LL in-line with contemporary graduate outcome frameworks.
DOI: 10.6084/m9.figshare.21326098.v1
title: A qualitative study exploring how students’ conceptualisations of lifelong learning develop in an undergraduate medical training programme

description: There is currently a paucity of evidence regarding how medical undergraduate training influences students’ attitudes and skills for lifelong learning (LL). This study describes medical graduates’ conceptualisations of LL at the University of Dundee and proposes a provisional theory regarding related curriculum influences. Using a methodology informed by scientific realism, semi-structured interviews were employed to explore six graduating medical students’ conceptualisations of and preparedness for LL. Findings were thematically analysed and aligned with existing educational theories. Graduates characterised LL as a continual process which emphases reflection, responsibility for learning, and maintaining motivation. Their conceptualisations did not translate readily beyond professional medical practice. The strongest curriculum influences were experiences in the authentic clinical environment, use of learning portfolios, and the intercalation of a medical science degree. In the absence of formal teaching, medical students’ conceptualisations of LL develop in accordance with both the implicit prevailing professional narrative and from curriculum interventions which: increase their sense of relatedness with their community of practice; provide autonomy in learning; and engender a sense of responsibility to learn. This provisional theory could be valuable in guiding the teaching and assessment of LL in-line with contemporary graduate outcome frameworks.
DOI: 10.34740/kaggle/dsv/5140466
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.5281/zenodo.7714771
title: MAG Collection - Rühlemann et al.: Comparative metagenomics reveals host-specific functional adaptation of intestinal microbiota across hominids

description: This tar-Archives hold the complete collection of n=7,506 metagenome-assembled genomes presented in the preprint "Comparative metagenomics reveals host-specific functional adaptation of intestinal microbiota across hominids" by Rühlemann <em>et al., bioRxiv, </em>2023. Article Summary Characterizing trajectories of the composition and function of hominid gut microbiota across diverse environments and host species can help reveal specific properties of the human microbiota, with possible implications for host evolution and health. Using shotgun metagenomic sequencing, we investigated taxonomic and functional diversity in the gut microbiota of wild-living great apes, including two gorilla subspecies (<em>Gorilla gorilla gorilla, Gorilla beringei beringei</em>), three chimpanzee subspecies (<em>Pan troglodytes verus, P.t. troglodytes, P.t. schweinfurthii</em>), and bonobos (<em>Pan paniscus</em>), together with human samples from Africa and Europe. We identified microbial taxonomic and functional adaptations convergent with host phylogeny at both the community and microbial genomic levels. We could show that repeated horizontal gene transfer and gene loss are processes involved in these adaptations. We hypothesize, that these adaptation processes and changes in the microbiome predispose the host to chronic inflammatory disorders, such as type 2 diabetes via altered histidine metabolism and inflammatory bowel disease indicated by adaptation of microbes to aerobic conditions. Additionally, we find multiple lines of evidence suggesting a widespread loss of microbial diversity and evolutionary conserved clades in the human microbiota, especially in the European population. Lastly, we observed patterns consistent with codivergence of hosts and microbes, particularly for the bacterial family <em>Dialisteraceae</em>, though we find that overall, co-phylogeny patterns are frequently disrupted in humans.
DOI: 10.5281/zenodo.7714770
title: MAG Collection - Rühlemann et al.: Comparative metagenomics reveals host-specific functional adaptation of intestinal microbiota across hominids

description: This tar-Archives hold the complete collection of n=7,506 metagenome-assembled genomes presented in the preprint "Comparative metagenomics reveals host-specific functional adaptation of intestinal microbiota across hominids" by Rühlemann <em>et al., bioRxiv, </em>2023. Article Summary Characterizing trajectories of the composition and function of hominid gut microbiota across diverse environments and host species can help reveal specific properties of the human microbiota, with possible implications for host evolution and health. Using shotgun metagenomic sequencing, we investigated taxonomic and functional diversity in the gut microbiota of wild-living great apes, including two gorilla subspecies (<em>Gorilla gorilla gorilla, Gorilla beringei beringei</em>), three chimpanzee subspecies (<em>Pan troglodytes verus, P.t. troglodytes, P.t. schweinfurthii</em>), and bonobos (<em>Pan paniscus</em>), together with human samples from Africa and Europe. We identified microbial taxonomic and functional adaptations convergent with host phylogeny at both the community and microbial genomic levels. We could show that repeated horizontal gene transfer and gene loss are processes involved in these adaptations. We hypothesize, that these adaptation processes and changes in the microbiome predispose the host to chronic inflammatory disorders, such as type 2 diabetes via altered histidine metabolism and inflammatory bowel disease indicated by adaptation of microbes to aerobic conditions. Additionally, we find multiple lines of evidence suggesting a widespread loss of microbial diversity and evolutionary conserved clades in the human microbiota, especially in the European population. Lastly, we observed patterns consistent with codivergence of hosts and microbes, particularly for the bacterial family <em>Dialisteraceae</em>, though we find that overall, co-phylogeny patterns are frequently disrupted in humans.
DOI: 10.34740/kaggle/dsv/5140493
title: Nifty-50 & Nifty Future 50 Dataset
DOI: 10.5281/zenodo.7716051
title: Datasets related to identification of invasive weeds S. elaeagnifolium, S. rostratum and S. nigrum as potential ToBRFV hosts

description: These datasets highlight the invasive weeds S. elaeagnifolium, S. rostratum and S. nigrum as potential ToBRFV hosts, and support the data provided directly in the scientific publication titled "<em>Solanum elaeagnifolium</em> and <em>S</em>. <em>rostratum</em> as potential hosts of the tomato brown rugose fruit virus", published in the PLOS journal. The data was obtained through a series of viral inoculations and bioassays, serological tests for viral infections (i.e. ELISA), viral RNA extraction and reverse transcription (RT)-PCR, as well as quantitative RT-PCR (RT-qPCR). The methods are described directly in the scientific publication with indicators allowing for interoperability and reusability by fellow researchers. The provided datasets are discussed and interpreted in detail, as well as their subsequent results, in the scientific publication. This research was conducted within the VIRTIGATION project, which is part of the EU Open Research Data pilot. This project has received funding from the European Union’s Horizon 2020 research and innovation program under grant agreement No. 101000570.
DOI: 10.5281/zenodo.7716050
title: Datasets related to identification of invasive weeds S. elaeagnifolium, S. rostratum and S. nigrum as potential ToBRFV hosts

description: These datasets highlight the invasive weeds S. elaeagnifolium, S. rostratum and S. nigrum as potential ToBRFV hosts, and support the data provided directly in the scientific publication titled "<em>Solanum elaeagnifolium</em> and <em>S</em>. <em>rostratum</em> as potential hosts of the tomato brown rugose fruit virus", published in the PLOS journal. The data was obtained through a series of viral inoculations and bioassays, serological tests for viral infections (i.e. ELISA), viral RNA extraction and reverse transcription (RT)-PCR, as well as quantitative RT-PCR (RT-qPCR). The methods are described directly in the scientific publication with indicators allowing for interoperability and reusability by fellow researchers. The provided datasets are discussed and interpreted in detail, as well as their subsequent results, in the scientific publication. This research was conducted within the VIRTIGATION project, which is part of the EU Open Research Data pilot. This project has received funding from the European Union’s Horizon 2020 research and innovation program under grant agreement No. 101000570.
DOI: 10.58032/agh/h4etkq
title: Diagnostyka uszkodzeń mechanicznych silnika BLDC z zastosowaniem termowizji

description: W ramach projektu Miniatura Nr 2022/06/X/ST7/00158 przeprowadzono badania dotyczące diagnostyki uszkodzeń mechanicznych wałów silników BLDC (Brushless Direct Current) z zastosowaniem termowizji. Zbudowano stanowisko do badania obrazów termowizyjnych silników BLDC. Oryginalna technika diagnostyczna uszkodzeń mechanicznych wałów silników BLDC została przedstawiona. Pomiary wykonano kamerą FLIR E4. Drgania kamery termowizyjnej podczas pomiarów były w zakresie 0–1,5 [m/s2]. Silniki BLDC pochodziły z golarek elektrycznych (Prime3 Men’s Shaver SRS11, Philips S5587/30, Philips S1332/41). Zbadano następujące stany silników BLDC: zdrowy silnik BLDC, silnik BLDC z jednym uszkodzonym wałem (głowicą), silnik BLDC z dwoma uszkodzonymi wałami (głowicami) i silnik BLDC z trzema uszkodzonymi wałami (głowicami). Oryginalna metoda ekstrakcji cech o nazwie PNID (power of normalized image difference) została zaprezentowana. Głębokie sieci neuronowe zostały zastosowane do analizy obrazów termowizyjnych wałów silników BLDC: GoogLeNet, ResNet50 i EfficientNetb0. PNID, GoogLeNet, ResNet50 i EfficientNet-b0 miały skuteczność rozpoznawania równą 100% dla czterech badanych klas.
DOI: 10.5281/zenodo.7715667
title: Global misinformation spillovers in the online vaccination debate before and during COVID-19 - ex

description: The dataset includes all the ids of the tweets analysed in the paper "Global misinformation spillovers in the online vaccination debate before and during COVID-19", divided by lang. They are all the tweets containing vaccines keywords in 18 different European languages, spanning the period October 2019 - March 2021 (excluded 2020 Jan - 2020 Jun). Note that a large fraction of the tweets can't be retrieved because of the suspension of the accounts and the removal of the posts by the users, so the study is only partially reproducible. The unzipped dataset has a dimension of 8,0G. The authors of the paper are: Lenti J, Mejova Y, Kalimeri K, Panisson A, Paolotti D, Tizzani M, Starnini M.
DOI: 10.5281/zenodo.7715666
title: Global misinformation spillovers in the online vaccination debate before and during COVID-19 - ex

description: The dataset includes all the ids of the tweets analysed in the paper "Global misinformation spillovers in the online vaccination debate before and during COVID-19", divided by lang. They are all the tweets containing vaccines keywords in 18 different European languages, spanning the period October 2019 - March 2021 (excluded 2020 Jan - 2020 Jun). Note that a large fraction of the tweets can't be retrieved because of the suspension of the accounts and the removal of the posts by the users, so the study is only partially reproducible. The unzipped dataset has a dimension of 8,0G. The authors of the paper are: Lenti J, Mejova Y, Kalimeri K, Panisson A, Paolotti D, Tizzani M, Starnini M.
DOI: 10.34740/kaggle/dsv/5140629
title: 2021 World Population (updated daily)
DOI: 10.6084/m9.figshare.21710766.v2
title: <i>Lavandula angustifolia</i> Mill. a model of aromatic and medicinal plant to study volatile organic compounds synthesis, evolution and ecological functions

description: <i>Lavandula angustifolia</i> Mill. or true lavender is an emblematic plant from dry and calcareous hills of the south of France. Lavender essential oils obtained from inflorescences harvested at bloom stage are mainly composed of monoterpenes and few sesquiterpenes. The characteristic lavender smell is due to linalool and linalyl acetate that represent more than half of the emitted volatile organic compound (VOC) quantity. These monoterpenoids are derived from plastidial pathway precursors. The regulation of this pathway in lavender is mainly managed by the successive expression of two DXS during flower development. In the light of 10 years of published data on lavender, it appears that biochemical pathways of main terpenes are mostly depicted. Several transcriptomic libraries are available and a genome at chromosome scale has been assembled and molecular markers developed. The diversity of lavender terpenes and their biosynthesis are reviewed with additional original data regarding the anatomical glandular structures and expression of genes involved in IPP biosynthesis.
DOI: 10.6084/m9.figshare.20696431
title: The “true Boerhaave herbarium”: an analysis of the specimens of Herman Boerhaave (1668–1738) contained in the Van Royen collection at naturalis

description: Collecting plants and making herbarium specimens was quintessential for an eighteenth century botanist. Studying the extant plant specimens from this period can give us valuable insights into how scholars approached the science of botany. Several dried plant specimens in the 18<sup>th</sup>-century Van Royen collection kept at Naturalis, Leiden, have at one time been recognised as originating from Herman Boerhaave (1668–1738). The aim of this study is to establish which specimens come from Boerhaave and try to answer the question why relatively few of these survived. We verified which specimens came from Boerhaave and updated the existing identifications of 88 specimens. We studied the way the specimens were mounted, the handwritings on the various labels and the use of decorations. We taxonomically identified them and linked the accompanying labels to the seed register of the Leiden Hortus Botanicus, where these specimens originated from. The transcription of the labels provided us with valuable information about the introduction and cultivation of indigenous and exotic, predominantly Mediterranean, plant species. Little effort has been put into connecting the contribution by Boerhaave with the living collection of the Leiden Hortus botanicus at the time, that is, the herbarium specimens we now know to have been described by Boerhaave. By studying these specimens we made his contribution visible.
DOI: 10.6084/m9.figshare.20696431.v1
title: The “true Boerhaave herbarium”: an analysis of the specimens of Herman Boerhaave (1668–1738) contained in the Van Royen collection at naturalis

description: Collecting plants and making herbarium specimens was quintessential for an eighteenth century botanist. Studying the extant plant specimens from this period can give us valuable insights into how scholars approached the science of botany. Several dried plant specimens in the 18<sup>th</sup>-century Van Royen collection kept at Naturalis, Leiden, have at one time been recognised as originating from Herman Boerhaave (1668–1738). The aim of this study is to establish which specimens come from Boerhaave and try to answer the question why relatively few of these survived. We verified which specimens came from Boerhaave and updated the existing identifications of 88 specimens. We studied the way the specimens were mounted, the handwritings on the various labels and the use of decorations. We taxonomically identified them and linked the accompanying labels to the seed register of the Leiden Hortus Botanicus, where these specimens originated from. The transcription of the labels provided us with valuable information about the introduction and cultivation of indigenous and exotic, predominantly Mediterranean, plant species. Little effort has been put into connecting the contribution by Boerhaave with the living collection of the Leiden Hortus botanicus at the time, that is, the herbarium specimens we now know to have been described by Boerhaave. By studying these specimens we made his contribution visible.