cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.038q8/4
title: R script for varied_grain_analyses_FigS2
DOI: 10.5061/dryad.038q8/5
title: R script for HBmodels_FigS3
DOI: 10.5061/dryad.038q8/6
title: R script for max_richness_FigS4
DOI: 10.5061/dryad.038q8/7
title: R script for within_site_GLMs_reduced_data_Figs_S5_2B_S6
DOI: 10.5061/dryad.241m4/1
title: Time series of behavior states during baseline and controlled exposure experiments from 12 DTAG records

description: Data set used to model effects of sonar and killer whale sound playbacks on sperm whale state-switching, probability of buzzing and locomotion effort in 1-min time steps. Each row represents 1-min time steps. Columns give the identifier for each tagged whale (tagid), seconds since tag-on (sfromtot), depth at the start of the 1-min bin (depth), estimated behavior state (state; 1-surface, 2-descent, 3-layer restricted search, 4-ascent, 5-drifting, 6-active non-foraging), probability of the state (state_prob), presence/absence of terminal echolocation buzz (buzz), locomotion effort measured by overall dynamic body acceleration (ODBA), and experimental phase (experiment). The remaining columns show candidate exposure covariates, as described in Table 2 of the manuscript.
DOI: 10.5061/dryad.33f97/1
title: Connectivity maps, demographics, and clinical assessments

description: The zip file contains Fisher’s Z transformed connectivity map of each ROI, restricted demographics of the participants, and their clinical assessments.
DOI: 10.5061/dryad.35nn0/6
title: Complete R code for Züst and Agrawal (2015)

description: R code to recreate all analyses in Züst and Agrawal (2015), separated into sections 'aphid population growth', 'plant growth', 'honeydew exudation', 'chemistry means' and 'trait correlations', with each section requiring its own data file provided on Dryad.
DOI: 10.5061/dryad.364mb/3
title: Appendix 6: Cross-correlation analysis code

description: R script containing code to run cross-correlation analysis (concordance). See the ReadMe file for full description.
DOI: 10.5061/dryad.47ct0/1
title: Arthropods on Senna mexicana var. chapmannii plants in plantation at TREC, Homestead, Florida 2003-2004

description: Plants were established, then manipulated throughout the growing season, and weekly observations were made of arthropods. Columns of data are: Plant number; date; block; treatment (1 = TF = tanglefoot; 2 = C = control; 3 = NP = nail polish; 4 = NPC = nail polish control); status (plant alive, sick, dead);  sulfurcp (eggs and larvae of Pieridae); flysuck (Ceratopogonidae); tortricid (larvae tying stem tips); spider; bug predators; wasp predators; ladybug (Cocinellidae); fire ants (Solenopsis); Tiny brown ants (Brachymyrmex); Large Black Ants (Camponotus rasilis & C. sexguttatus); Odontomyrmex; crazy ants (Paratrechina); Camponotus abdominalis; weevils; Pseudomyrmex elongatus; Pseudomyrmex mexicanus (=P. gracilis); snakes (occasionally around or in plants). For all ant species, Ceratopogonidae, weevils, only presence/absence on plant was noted (1 = present).
DOI: 10.5061/dryad.47ct0/2
title: cpvoucherTREC2003

description: These data are for individual caterpillars 3rd instar and beyond collected from experimental plants and brought to the lab for rearing. Columns in the file are: Number (collection number, each caterpillar is a separate record, some multiple in one collection number - initially renumbered with decimals, that convention later abandoned); plant number (same as in other file); Collection date; Life History stage (instar); Caterpillar species (s.o. = sleepy orange, Abaeis nicippe; c.s. = cloudless sulfur, Phoebis sennae; o.b.s. = orange-barred sulfur, Phoebis philea); Pupated (yes/no); Pupation date; Adult M/F (No or sex); Parasitized; Virus; Moldy; Discontinued date; comments.
DOI: 10.5061/dryad.7gr39/1
title: Plant Microsatellite Database

description: This database contains plant microsatellite markers (Simple Sequence Repeats; SSRs) for the larger part of the last two decades. The dataset was compiled in an Excel 2007 spreadsheet from the Molecular Ecology Resources online database (where authors are required to submit primer information as a condition of publication) at http://tomato.bio.trinity.edu or were manually compiled from published articles in Molecular Ecology, Molecular Ecology Notes, Molecular Ecology Resources, and American Journal of Botany (AJB), spanning in total from 1997 to 2012. The articles were found by screening the Scopus (Elsevier) search engine. Please see the publication for more specifics on how the dataset was compiled and analyzed. Null values are represented with a period (‘.’). We have included a ReadMe file to describe column headings.
DOI: 10.5061/dryad.7gr39/2
title: Excluded entries

description: This file contains entries that were purposefully removed from our analyzed dataset. Please see the publication for more details. The ReadMe file is the same as that associated with the Plant Microsatellite Database file and contains column heading descriptions.
DOI: 10.5061/dryad.7nm09/1
title: Environmental_data

description: Environmental data taken using spatial information collected from specimens examined for genetic and morphological analysis. Sampled data are from GIS layers, including Bioclim, the Australian soil database, a worldwide DEM and satellite imagery.
DOI: 10.5061/dryad.7nm09/2
title: Extent_4_SDM

description: Spatial extents used to clip GIS layers for each species
DOI: 10.5061/dryad.7nm09/3
title: Genetic_Data

description: Genetic data used for species tree estimation (6 genes - focal group only) and ND2 rate of substitution estimation (Agamidae). Files are in nexus format and contain genbank accession numbers.
DOI: 10.5061/dryad.7nm09/4
title: MDI_plot_function

description: R function written to run MDI analyses incorporating phylogenetic uncertainty. Function will produce plots similar to those that appear in the ms.
DOI: 10.5061/dryad.7nm09/5
title: Morphology_data

description: Morphological data collected from specimens (both male and female) and organized by category (see ms).
DOI: 10.5061/dryad.cr2n4/1
title: Sexual dimorphism data for Crinia georgiana

description: The snout-vent length (mm), and arm girth (mm) of males and females of the Australian quacking frog Crinia georgiana, for an analysis of sexual dimorphism in arm girth.
DOI: 10.5061/dryad.d0325/1
title: All trout OEC curve data and fits

description: These are the values, standard errors, and curve fits for all oxygen equilibrium curves for trout determined from this study. All are plotted in Fig. 1A.
DOI: 10.5061/dryad.d0325/2
title: Human oxygen equilibrium curves from the literature

description: This exercise took into consideration data from Itoh et al., 2001, Winslow et al., 1977, and Roughton and Severinghaus, 1973 to make human oxygen equilibrium curves that would eventually inspire the analyses for this paper.
DOI: 10.5061/dryad.d0325/3
title: All trout delta PO2 values

description: All of these values were calculated directly from the oxygen equilibrium curves, i.e. by subtracting exact values from curve to curve.  These values were then plotted for Fig. 1B.
DOI: 10.5061/dryad.d0325/4
title: All human delta PO2 values

description: These human delta PO2 values were calculated by fitting data from Tyuma and Ueda, 1975 with the Equation 1 in the manuscript. These values are graphically displayed in Fig. 1B.
DOI: 10.5061/dryad.k78g1/2
title: OOHCA Master ICU Database vDataDryad
DOI: 10.5061/dryad.km75s/1
title: Barcode sequences of reared parasitoid reference specimens

description: COI barcode sequences of 72 reared adult parasitoid reference specimens that were used to identify larval parasitoids based on their barcodes.
DOI: 10.5061/dryad.p3v3s/1
title: Glyphosate dose response data for the common morning glory

description: Dose response data from field-collected seed material. RoundUp PowerMax was used in herbicide resistance screen. All data was collected in University of Georgia Plant Sciences greenhouses (Athens, GA). Shown are individual ID (ID), Experimental replicate (Experiment), Treatment Dose (TreatmentLevel), Population ID number (POPID),State in which population was samped, region in which population was sampled, Survival to glyphosate (Survivorship, 1= survived, 0= died).
DOI: 10.5061/dryad.p6598/1
title: 59_EuropeanWolves

description: Single nucleotide polymorphism (SNP) raw data files for 59 individuals in PLINK-format.
DOI: 10.5061/dryad.p6598/2
title: 59_EuropeanWolves

description: Single nucleotide polymorphism (SNP) raw data files for 59 individuals in PLINK-format.
DOI: 10.5061/dryad.p6598/3
title: Sample ID and locations for 59 European wolves

description: Sample identification, sample locations and population cluster memberships for all individuals.
DOI: 10.5061/dryad.rg70p/2
title: Alignment_cox1_Sellaphora_capitata

description: Alignment of partial cox1 sequences of Sellaphora used for phylogeny reconstruction (Fig. S2).
DOI: 10.5061/dryad.rg70p/3
title: Alignment_partial_rbcL_Eunotia

description: Partial rbcL sequences of Eunotia bilunaris "robust" strains used for phylogeography of the species in Western Europe (Fig. 2).
DOI: 10.5061/dryad.rg70p/4
title: BI_consensus_phylogeny_cox1_Sellaphora_capitata

description: Tree file of Sellaphora Bayesian Inference phylogeny based on partial cox1 sequences (Fig. S2).
DOI: 10.5061/dryad.rg70p/5
title: BI_consensus_phylogeny_rbcL_Eunotia

description: Tree file of full rbcL Bayesian Inference phylogeny of the Eunotia bilunaris/flexuosa species complex.
DOI: 10.5061/dryad.rg70p/6
title: Isolation_by_distance

description: Matrices of pairwise standardized Fst values and (log-transformed) geographic distances between sampling locations of Eunotia bilunaris "robust" and Sellaphora capitata respectively, for assessment of isolation-by-distance patterns (Fig. 3).
DOI: 10.5061/dryad.rg70p/7
title: MLG_data_Ebilunaris_robust

description: Microsatellite allelic composition of Eunotia bilunaris "robust" strains.
DOI: 10.5061/dryad.rg70p/8
title: MLG_data_Sellaphora_capitata

description: Microsatellite allelic composition of Sellaphora capitata strains.
DOI: 10.5061/dryad.sp418/10
title: BA3output_Ornatus

description: Output from BayesAss for P. ornatus populations
DOI: 10.5061/dryad.sp418/11
title: Ornatus_189ind_HocTanDao

description: Genotyping_mtDNAcontrolregion_189individual
DOI: 10.5061/dryad.sp418/12
title: BestModel_G1.26_Ornatus_189ind_213poSite_2014jun03

description: Results from BestModel using MEGA6
DOI: 10.5061/dryad.sp418/13
title: migrate_outfile

description: Initial output from Migrate ver 3.6.4
DOI: 10.5061/dryad.sp418/7
title: GenotypingMicrosatellite

description: Genotyping Data and Diversity Indices of ten microsatellites
DOI: 10.5061/dryad.sp418/8
title: GenotypingMicrosatellite_OR_CorrectedNullAllele

description: Genotyping Data and Diversity Indices of ten microsatellites after correcting null alleles
DOI: 10.5061/dryad.sp418/9
title: StructureResults_OR_10000-100000

description: Results from Structure Harvester and Barplot of P. ornatus populations with the burnin as 10% of run length (10,000 - 100,000)
DOI: 10.5061/dryad.tf8g2/1
title: Proportion Preferred choices Per Coherence for Non-Stimulated trials of Monkey1
DOI: 10.5061/dryad.tf8g2/2
title: ProportionPreferredResponsePerCoherence_NonStimulated_Monkey2
DOI: 10.5061/dryad.tf8g2/3
title: ProportionPreferredResponsePerCoherence_Stimulated_Monkey1
DOI: 10.5061/dryad.tf8g2/4
title: ProportionPreferredResponsePerCoherence_Stimulated_Monkey2
DOI: 10.5061/dryad.tf8g2/5
title: Reaction time (RT) for NonPreferred choices Per Coherence for non-Stimulated trials of Monkey1
DOI: 10.5061/dryad.tf8g2/6
title: RTNonPreferredResponsePerCoherence_nonStimulated_Monkey2
DOI: 10.5061/dryad.tf8g2/7
title: RTNonPreferredResponsePerCoherence_Stimulated_Monkey1
DOI: 10.5061/dryad.tf8g2/8
title: RTNonPreferredResponsePerCoherence_Stimulated_Monkey2
DOI: 10.5061/dryad.tr26m/1
title: Davis et al JAE data

description: Data from four experiments testing interactions between wheat, barley yellow dwarf virus, and aphids under multiple levels of water stress.
DOI: 10.5061/dryad.29c16/2
title: Trophic Dynamics of Filter Feeding Bivalves in the Yangtze Estuarine Intertidal Marsh: Stable Isotope and Fatty Acid Analyses

description: the data include the bivalve distribution in different habitats of estuarial salt marsh. Stable isotope and fatty acid result from bivalves, sediments, particular organic matters and vascular plant also showed in the data file.
DOI: 10.5061/dryad.2mv73/1
title: Sequence alignments files of MEG format

description: includes the COI and ITS alignment of Siphonaria japonica in the present study, the COI alginment of Cellana toreuma by Dong et al. 2012, the COI alignment of Atrina pectinata by Liu et al. 2011, and the COIII alignment of Sargassum horneri by Hu et al. 2011
DOI: 10.5061/dryad.2pf38/4
title: Omma_avatar_cybertypes_metadata
DOI: 10.5061/dryad.4d02r/1
title: Data_tolerance to deer herbivory and resistance to insects

description: Data on which analyses were based on. See the "readme" document for column descriptions.
DOI: 10.5061/dryad.7fv64/1
title: aquatic_fungal_communties
DOI: 10.5061/dryad.7nm09/10
title: TreeCov_data

description: Tree cover data derived from satellite imagery.
DOI: 10.5061/dryad.7nm09/11
title: Mean_LAI_data

description: Average Leaf Area Index data derived from satellite imagery.
DOI: 10.5061/dryad.7nm09/12
title: Mean_NDVI_data

description: Mean NDVI calculated from satellite imagery.
DOI: 10.5061/dryad.7nm09/14
title: StDev_NDVI_data

description: Average yearly standard deviation (i.e., seasonality) of NDVI calculated across years from satellite imagery.
DOI: 10.5061/dryad.7nm09/6
title: Phylogenetic_Correlation_function

description: R function to perform phylogenetic correlation analyses accounting for phylogenetic uncertainty.
DOI: 10.5061/dryad.7nm09/7
title: SDM_asciis

description: Species distribution map layers (median) for each species generated using MaxEnt.
DOI: 10.5061/dryad.7nm09/8
title: SDM_thresholds

description: Thresholds (maximum specificity+sensitivity) used for cut-off values for each species SDM when calculating area overlap between species distributions.
DOI: 10.5061/dryad.7nm09/9
title: Trees

description: Species tree files, including the median species tree used for most analyses and the 1000 trees sampled from the posterior distribution.
DOI: 10.5061/dryad.8654h/1
title: Mitchell and Bergmann Field Data
DOI: 10.5061/dryad.8654h/2
title: Mitchell and Bergmann Jump Data
DOI: 10.5061/dryad.8nr13/1
title: survival of mosquitoes

description: Survival and infection status data for mosquitoes.
DOI: 10.5061/dryad.8nr13/2
title: Parasite densities in primary infections
DOI: 10.5061/dryad.8nr13/3
title: Establishment of infection from second feed

description: Data showing that mosquitoes can accumulate infections from multiple feeds.
DOI: 10.5061/dryad.8nr13/4
title: Parasite density in infections established from a secondary feed
DOI: 10.5061/dryad.92bv3/1
title: wetland plant richness and diversity_fire and grazing

description: This file contains plant species richness and diversity metrics from forty wetlands sampled over four years, 2006-2009.  These are response variables for a factorial experimental manipulating fire and grazing management on wetlands embedded in different pasture management intensities.
DOI: 10.5061/dryad.92bv3/2
title: wetland_richness_diversity_Variablenames

description: Full variable names and definitions for richness and diversity dataset
DOI: 10.5061/dryad.92bv3/3
title: WetlandPlant_FunctionalGroup

description: These data include functional group (graminoids, palatable grasses, shrubs, forbs, natives, exotics, Eupatorium capillifolium) relative frequency and coefficient of conservatism scores (a measure of floristic quality)  in forty wetlands sampled over a four year experiment manipulating grazing and fire management of wetlands embedded in two different management intensities.  The first year is a pre-treatment year.
DOI: 10.5061/dryad.92bv3/4
title: USDA_FunctionalGroup_Variablenames

description: This file contains the full variable names for the Wetland Functional Group data set.
DOI: 10.5061/dryad.cr2n4/2
title: Calling, mating and polyandry probabilities

description: Data for the analyses of mating tactics, mating success and polyandry probability in the Australian quacking frog Crinia georgiana. The columns mean: Study site (BS = Burt Street in Albany, WA; WB = William Bay; HF = swamp near the Hockey Field in Albany, WA; KG = Kangaroo Gully), quadrat ID, snout-vent length (mm), arm girth (mm), male density, mating tactic (calling or silent), mating success (0 or 1), whether a mating was polyandrous (0 or 1), the number of males per mating, and extra notes.
DOI: 10.5061/dryad.cr2n4/3
title: Number of males per mating

description: Data for the analysis of number of males involved in matings of the Australian quacking frog Crinia georgiana. The columns mean: Study site (MS = Melville Street in Albany, WA; BS = Burt Street in Albany, WA; WB = William Bay; HF = swamp near the Hockey Field in Albany, WA; KG = Kangaroo Gully), quadrat ID, number of males involved in the mating, and male density.
DOI: 10.5061/dryad.g064k/1
title: Data on larval performance (except establishment), development race outcome for the butterflies and for the host plant species
DOI: 10.5061/dryad.g064k/2
title: Data on larval establishment
DOI: 10.5061/dryad.g44c1/1
title: Allele-level genotype data for 134 Rock wren (Xenicus gilviventris) genotyped at 14 microsatellite loci

description: Allele-level genotype data for 134 Rock wren (Xenicus gilviventris) genotyped at 14 microsatellite loci. Additional sample information includes GPS (NZTM) coordinates for each individual's sampling location.
DOI: 10.5061/dryad.g44c1/2
title: Cytochrome b sequence data for X. gilvivientris

description: Cytochrome b sequence data for twenty X. gilvivientris individuals from throughout their range.
DOI: 10.5061/dryad.g44c1/3
title: Xenicus gilviventris MtDNA Control Region sequence data

description: MtDNA Control Region sequence data for 25 Xenicus gilviventris individuals from throughout their range.
DOI: 10.5061/dryad.g44c1/4
title: Xenicus gilviventris beta fibrinogen intron 7 sequence data

description: Unphased nuclear beta-fibrinogen intron-7 sequence data for 18 Xenicus giliventris individuals, sampled from throughout their range
DOI: 10.5061/dryad.g44c1/5
title: Matrix of pairwise geographic distances (in kilometres) among eight rock wren (Xenicus gilviventris) populations across the South Island, New Zealand.

description: hic distances (in kilometres) among eight rock wren (Xenicus gilviventris) populations across the South Island, New Zealand. Used to perform Mantel test (Figure S3).
DOI: 10.5061/dryad.g44c1/6
title: Matrix of pairwise geographic distances (kilometres) among three rock wren (Xenicus gilviventris) populations across the northern South Island, New Zealand

description: Matrix of pairwise geographic distances (kilometres) among three rock wren (Xenicus gilviventris) populations across the northern South Island, New Zealand. Used to perform Mantel test (Figure S4a).
DOI: 10.5061/dryad.g44c1/7
title: Matrix of pairwise geographic distances (kilometres) among five rock wren (Xenicus gilviventris) populations across the southern South Island, New Zealand.

description: Matrix of pairwise geographic distances (kilometres) among five rock wren (Xenicus gilviventris) populations across the southern South Island, New Zealand. Used to perform Mantel test (Figure S4b).
DOI: 10.5061/dryad.h373j/1
title: Asian carp qPCR detection sensitivity

description: Each worksheet shows the qPCR threshold cycle (mean and standard deviation based on six replicates) for detection of biological and synthetic targets for a species of Asian carp [bighead carp (Hypophthalmichthys nobilis), silver carp (H. molitrix), and grass carp (Ctenopharyngodon idella)] based on biological reference samples and synthetic positive controls.
DOI: 10.5061/dryad.k30v3/1
title: data_deterioration
DOI: 10.5061/dryad.k30v3/2
title: data_SUCbifurcation
DOI: 10.5061/dryad.k30v3/3
title: data_SUCindicator
DOI: 10.5061/dryad.km75s/2
title: Barcode sequences of parasitoid larvae

description: COI barcode sequences of 561 parasitoid larvae collected from galls induced by Pontania sawflies
DOI: 10.5061/dryad.km75s/3
title: Parasitoid numbers in Pontania population-level samples

description: Numbers of parasitoid larvae (identified by COI barcodes) representing each of 14 parasitoid species in 22 Pontania leaf-galler community samples.
DOI: 10.5061/dryad.km75s/4
title: Commands and data for GLM analyses in mvabund

description: Combined text file containing commands and data used for the model-based analyses of the effects of host (galler and willow species) and location on parasitism using the mvabund package in R.
DOI: 10.5061/dryad.km75s/5
title: Commands and data for test of phylogenetic effects

description: Combined text file containing commands and data used for testing the effects of galler and parasitoid phylogenies on proportional species-level parasitism as described in Ives & Godfray (2006).
DOI: 10.5061/dryad.ks4k2/1
title: Nougué et al 2015 Individual Genotypic data

description: Microsatellite genotypic individual data for the populations used in the paper
DOI: 10.5061/dryad.p3v3s/2
title: SSR data for population genetic screen of the common morning glory

description: SSR loci data for I. purpurea field collections. Leaf material used for DNA isolation and SSR genotyping was obtained from field collections in 2012 growing season. in GenalEx format from 2012 sampling period. Shown are population ID (POPID), and each SSR locus size for 2 alleles per 15 loci used in the data set. Data are shown in 30 subsequent columns (2 columns per locus): 31, 2, 27, 8, 34, 18, 1, 36, 47, 12, 21, 6, 45, 26, 42. A zero indicates missing data at a locus.
DOI: 10.5061/dryad.r7865/1
title: DB_PWP_Users_English

description: Questionnaire to patients with diabetes mellitus about the use of a patient web portal.
DOI: 10.5061/dryad.rs82m/1
title: HuttenlockerAbdalaSupplementalDataFile

description: Table of measurements for whaitsiid holotypes and other referred specimens used in the allometric analysis.
DOI: 10.5061/dryad.sp418/14
title: Arlequin_189ind_6pop_213site_2014sep10_main

description: Results using Arlequin based on 12,500 and 16,000 permutations
DOI: 10.5061/dryad.tf8g2/10
title: RTPreferredResponsePerCoherence_nonStimulated_Monkey2
DOI: 10.5061/dryad.tf8g2/11
title: RTPreferredResponsePerCoherence_Stimulated_Monkey1
DOI: 10.5061/dryad.tf8g2/12
title: RTPreferredResponsePerCoherence_Stimulated_Monkey2
DOI: 10.5061/dryad.tf8g2/13
title: Read me
DOI: 10.5061/dryad.tf8g2/9
title: RTPreferredResponsePerCoherence_nonStimulated_Monkey1
DOI: 10.5061/dryad.33656/1
title: Poospiza cabanisi, isolate FRA67, UCE data, raw sequences, end 1

description: Raw sequences resulting from sequence capture of 634 UCE loci obtained from Poospiza cabanisi, isolate FRA67. End 1 from Illumina paired-end run.
DOI: 10.5061/dryad.33656/2
title: Poospiza cabanisi, isolate FRA67, UCE data, raw sequences, end 2

description: Raw sequences resulting from sequence capture of 634 UCE loci obtained from Poospiza cabanisi, isolate FRA67. End 2 from Illumina paired-end run.
DOI: 10.5061/dryad.33656/3
title: Poospiza lateralis, isolate FRA46, UCE data, raw sequences, end 1

description: Raw sequences resulting from sequence capture of 634 UCE loci obtained from Poospiza lateralis, isolate FRA46. End 1 from Illumina paired-end run.
DOI: 10.5061/dryad.33656/4
title: Poospiza lateralis, isolate FRA46, UCE data, raw sequences, end 2

description: Raw sequences resulting from sequence capture of 634 UCE loci obtained from Poospiza lateralis, isolate FRA46. End 2 from Illumina paired-end run.
DOI: 10.5061/dryad.33656/5
title: Poospiza thoracica, isolate SC04, UCE data, raw sequences, end 1

description: Raw sequences resulting from sequence capture of 634 UCE loci obtained from Poospiza thoracica, isolate SC04. End 1 from Illumina paired-end run.