cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.t3g68/1
title: damage

description: damage.csv
- measured on one occasion 
- 'plot' shows plot number
- 'treatment' shows treatment, 'contr' = control, 'new' = short-term manipulation (1 yr), 'old' = long-term manipulation (11 yrs)
- 'species' shows species, 'myrt'=Vaccinium myrtillus, 'vitis'=Vaccinium vitis-idaea
- 'individual' damage is measured on 5 individuals per plot (the same as shoot elongation), averaged per plot for statistical analysis
- 'damage.percent' shows visible frost damage in % of tissues of individual affected
DOI: 10.5061/dryad.t3g68/2
title: elongation

description: elongation.csv- 'Plot_nr' shows plot number- 'Plot' shows treatment, 'contr' = control, 'new' = short-term manipulation (1 yr), 'old' = long-term manipulation (11 yrs)- 'individual' shoot elongation (growth) is measured on 5 individuals per plot , averaged per plot for statistical analysis- 'replicate' for Vaccinium myrtillus, elongation of several shoots per individual, averaged per individual for statistical analysis- 'growth[mm]' shoot growth in mm
DOI: 10.5061/dryad.t3g68/3
title: phenology

description: phenology.csv- 'date'shows the different days, 1= 18th May, 2= 26th May, 3= 1st June, 4= 8th June- 'plot' shows plot number- 'treatment' shows treatment, 'contr' = control, 'new' = short-term manipulation (1 yr), 'old' = long-term manipulation (11 yrs)- 'species' shows species, 'myrt'=Vaccinium myrtillus, 'vitis'=Vaccinium vitis-idaea- bbch.leaf refers to the categories of leaf of the BBCH scale, bbch.flower to flower stages (not included in analysis as this was a year of particulalry few flowers)- we focused in our analysis on when species earliest reached at least 2 steps: 7 (bud burst) and 10 (leaf unfolded), as those were the most clear ones
DOI: 10.5061/dryad.t3g68/4
title: root length and growth

description: root length and growth.csv- 'plotnr' shows plot number- 'manip'  1=control, 2=short-term manipulation, 3=long-term manipulation- 'length' is root length at sampling occasion (average out of 3 minirhizotron tubes per plot)- 'growth' is root growth from that sampling occasion to the next (average out of 3 minirhizotron tubes per plot; NA for last sampling, as the growth is always the change between two dates)- 'sampling' sampling occasion- 'doy' day of year of sampling occasion
DOI: 10.5061/dryad.tt8v6/1
title: Data used for hierarchical Bayesian model

description: The data file includes measurements from monocultures and species-level trait data from the previous studies by the authors. Data description is included in the file.
DOI: 10.5061/dryad.v3s0k/1
title: IncrementStrategyProduct

description: Weight gain strategy --&gt; Increment Strategy
DOI: 10.5061/dryad.vb1pp/1
title: ALL-ORNAMENT-DATA

description: This spreadsheet contains all animal ornament data used for statistical tests. Each column is a list of ornament sizes (or other intensity measure) taken from a population of a particular ornamented species, noted in the column header. All data was either acquired directly from authors or extracted from publications, also noted in the header.
DOI: 10.5061/dryad.vb1pp/2
title: Ornament software (main)

description: This Matlab script will reproduce all figures in the main manuscript. The software will numerically integrate the ornament model, plot health versus steady state ornament size, analyze fixed points, etc. All code is commented for easy use.
DOI: 10.5061/dryad.04tq4/1
title: R data file

description: R data file containing metadata, OTU table, and other R objects used for publication.
DOI: 10.5061/dryad.04tq4/2
title: R analysis script

description: R script used for analyses resulting in the publication. Calls data from associated Rdata file.
DOI: 10.5061/dryad.0j4m5/10
title: F1 oviposition
DOI: 10.5061/dryad.0j4m5/11
title: R script for analysis of F1 sex ratio
DOI: 10.5061/dryad.0j4m5/12
title: F1 sex ratio
DOI: 10.5061/dryad.0j4m5/13
title: R script for analysis of F2 hatch rates
DOI: 10.5061/dryad.0j4m5/14
title: F2 hatch rate
DOI: 10.5061/dryad.0j4m5/15
title: R script for analysis of parental oviposition
DOI: 10.5061/dryad.0j4m5/16
title: Parental oviposition
DOI: 10.5061/dryad.0j4m5/17
title: R script for CMH tests among hybrid groups using their haplotype counts as input
DOI: 10.5061/dryad.0j4m5/9
title: R script for analysis of F1 oviposition
DOI: 10.5061/dryad.0s0n6/1
title: bmjopen-2016-012563_FTSmits.sav_v2

description: We used the data of 5,712 patients at least 18 years of age, enlisted in 2007-2009 in 5 GP practices in one primary healthcare centre in Amsterdam, the Netherlands. These practices participated in the GP-based continuous morbidity registration network of the Department of General Practice at the Academic Medical Center of the University of Amsterdam. In this GP network, electronic medical record data are extracted for research purposes.  We used only face-to-face consultations with the GP (consultations in the surgery and house-calls). Patients under the age of 18 years were excluded, because their consultations often involved the parents as well as the patient. 	Because only a proportional threshold definition selects the exceptional users within each sex and age group and allows more meaningful comparisons between practices, periods and countries, we defined FAs as the age and sex-adjusted (18-30 years; 31-45 years; 46-60 years; 61 years+) top 10 centile attenders within a time frame of one year (1-year frequent attenders).3;8 FAs were determined for each of the years 2007, 2008 and 2009. One-year frequent attenders (1yFAs) attended frequently in one of those years. We defined 1-, 2-, and 3-year frequent attenders (1-, 2- and 3yFAs) as those patients who were frequent attender in one, two or three of those years, respectively. All other enlisted patients were non-FAs.
DOI: 10.5061/dryad.1tj60/1
title: Vine species database (Appendix 2)

description: Vine species reported in Puerto Rico, including information on their traits and the references supporting each record.
DOI: 10.5061/dryad.2bb5q/2
title: Pea Aphid Offspring Phenotype Counts from Individual Females

description: This csv file contains pea aphid offspring phenotype counts (winged and wingless) from three genotypes of 30 individual females. Females were crowded for 24 hours in three groups of ten and moved individually to plants for 24 hours. Offspring larviposited on the plants were counted. This measured the individual female response of female aphids to crowding conditions. The grouped type are the sum of the offspring from each crowded group (i.e. females 1-10 were crowded together and are group 1).
DOI: 10.5061/dryad.2kq65/1
title: data_parasites_habitats

description: Survey of infection by virus, protists, bacteria and helminths of 15 rodent species occurring in 19 main habitats of Thailand, Lao PDR
DOI: 10.5061/dryad.2v9g0/1
title: Raw field data

description: This is the raw field data collected in Finland. It has detailed information of each damselfly and dragonfly individual we collected. Data contains coordinates, species number (1-22), scientific species name, sex (1 for males, 2 for females), wing length in millimeters (right hind wing), fresh body mass in grams, number of ectoparasitic larval water mites found on each individual, number of endoparasitic gregarines found on each individual and an implant value indicating the encapsulation response each individual mounted against an artificial implant.
DOI: 10.5061/dryad.3428j/3
title: Phase Ib AMMP IRR USARIEM SALUT_CQ_May 2013

description: This is an Excel data file for the interrater reliability testing in Phase Ib of this study. There are 4 data files for different phases of this study and a data dictionary.
DOI: 10.5061/dryad.3428j/4
title: Phase II_AMMP Bragg IRR November2013

description: This is an Excel file for Phase II interrater reliability testing, there are 4 data files and one data dictionary file.
DOI: 10.5061/dryad.3428j/5
title: AMMP REDCap data dictionary_DRYAD_16Dec2016

description: Data dictionary for IRR study.
DOI: 10.5061/dryad.38nh3/1
title: Female Phenotypes

description: This file contains all of the raw female phenotype data. The column names refer to the following: PopID = Population ID; ID = Individual ID; SVL = snout-vent length (mm); std.length = standard length (tip of snout to start of tail, mm); depth = body depth (measured at urogenital opening, mm); SnoutLength = snout length (tip of snout to eye, mm); SnoutDepth = snout depth (measured at midpoint of snout, mm); HeadLength = head length (tip of snout to start of gills, mm); MBandArea = mean band area (mm^2); BandNum = number of bands (count).
DOI: 10.5061/dryad.38nh3/2
title: Male Phenotypes

description: This file contains all of the raw male phenotypic measurements. he column names refer to the following: PopID = Population ID; ID = Individual ID; SVL = snout-vent length (mm); std.length = standard length (tip of snout to start of tail, mm); depth = body depth (measured at urogenital opening, mm); SnoutLength = snout length (tip of snout to eye, mm); SnoutDepth = snout depth (measured at midpoint of snout, mm); HeadLength = head length (tip of snout to start of gills, mm)
DOI: 10.5061/dryad.38nh3/3
title: Sample Location Coordinates

description: This file contains the latitude ("lat") and longitude ("lon") for each collection site ("site").
DOI: 10.5061/dryad.38nh3/4
title: Draft Genome Assembly

description: This is the draft genome assembly file, courtesy of Clay Small and William Cresko.
DOI: 10.5061/dryad.38nh3/5
title: PLINK map file for subset of SNPs

description: This file is the map file for the 1753 unlinked SNPs that are in Hardy Weinberg Equilibrium.
DOI: 10.5061/dryad.39gb2/1
title: COX ms data

description: Brain and body mass data, brain volume data, and cytochrome oxidase activity data
DOI: 10.5061/dryad.3j0r2/1
title: Papuaneon NEXUS file with aligned sequences and trees

description: NEXUS file with 28S, 16sND1 and Actin 5C aligned matrices, and phylogenetic trees inferred
DOI: 10.5061/dryad.3sr84/1
title: C++ code for the evolution of life cycle in a alternation model

description: The program simulates the evolution of the relative length of the haploid and diploid phase in a haploid-diploid population subjected to deleterious mutations.
DOI: 10.5061/dryad.3v60n/1
title: northern flicker excavation

description: Spss file with records of flickers excavating trees
DOI: 10.5061/dryad.4ht08/1
title: AFLP and Phenotypic data for Zhang et al

description: two sheets: 1) AFLP data with 95 markers derived from samples of 20-24 individual plants from each of nine population pairs. 2) phenotypic data collected from 9 individual plants from the same nine population pairs after three weeks of experiment.
DOI: 10.5061/dryad.5d29r/1
title: Mate choice and survival data in relation to relatedness and inbreeding in grey mouse lemurs

description: The file has 3 sheets: the first sheet contains data on female mate choice in relation to the (genetic) relatedness of her potential mates, the second sheet contains data on male mate choice in relation to the (genetic) relatedness of his potential mates, and the third sheet contains capture-mark-recapture data supporting a survival analysis in relation to individual heterozygosity. All the headlines should be self-explanatory.
DOI: 10.5061/dryad.8bp7m/1
title: Dataset - bg-2016-6 (Ali et al.)

description: Data from: Stand structural diversity rather than species diversity enhances aboveground carbon storage in secondary subtropical forests in Eastern China. Biogeosciences
DOI: 10.5061/dryad.d468t/1
title: Euk_Morph

description: Morphological measurements for ovipositor and tibia of Eukobelea fig wasps. Includes species assignment codes
DOI: 10.5061/dryad.g5227/1
title: Data for McFarlane et al.
DOI: 10.5061/dryad.g6q2f/1
title: Frequency tagged Data

description: FFT Data for all test and control conditions for all 13 subjects.
DOI: 10.5061/dryad.j9q7h/2
title: annex 1 -interview guides and questionnaire

description: Interview guides for qualitative phases (phase 1 and 3 of the study); questionnaire passed during quantitative phase (phase 2)
DOI: 10.5061/dryad.jb3tc/2
title: Puckett_etal_RatPhylogeog_SNPs.tar

description: SNPs (l=32,127) discovered from a ddRAD-Seq project with Rattus norvegicus (n=314) and Rattus rattus (n=33) samples from around the world.  SNPs are aligned to the Rattus norvegicus Rnor_6.0 genome and provided as binary PLINK files (.bed, .bim, .fam).  See Tables S1 and S2 of the manuscript for locations for each sample name.
DOI: 10.5061/dryad.jb3tc/3
title: Puckett_etal-RatPhylogeog-MitoHaplotypes

description: Mitochondrial SNP haplotypes produced from ddRAD-Seq data. We identified 104 haplotypes in 144 brown rat (Rattus norvegicus) samples, that group into 10 clades. SNP positions found in Table S3 of the manuscript. Geographic distribution of haplotypes in Table S4 of the manuscript.
DOI: 10.5061/dryad.kt38r/1
title: Glasshouse OTUs

description: All OTUs found in roots from the glasshouse experiment. includes non-mycorrhizal, arbuscular mycorrhizal and ectomycorrhizal
DOI: 10.5061/dryad.kt38r/2
title: field samples OTUs
DOI: 10.5061/dryad.m93f6/1
title: Introduction pathways of alien species

description: The data file INTRODUCTION_PATHWAYS.xls contains information for 8323 introduced species regarding introduction pathways, taxonomic group (plants, vertebrates, invertebrates, algae, fungi, other), inhabited environment (terrestrial, freshwater, marine) and listing status on three different lists of worst invasive alien species. Pathway data were retrieved from the Invasive Alien Species Pathway Management Resource (IASPMR, www.pathway-toolbox.auckland.ac.nz), including all pathway information contained in the Global Invasive Species Database (GISD, www.iucngisd.org), and from DAISIE European Invasive Alien Species Gateway (www.europe-aliens.org). The README file provides basic descriptions of the variables in the data file. For full details on data handling and pathway categorisation see Saul et al. (2016, J Appl Ecol).
DOI: 10.5061/dryad.mp332/1
title: All data

description: Data for van den Brink, Murphy & Niewenhuis: Pupil diameter tracks lapses of attention. Three types of data are provided: 1) Raw data;  2) the processed data that were used to compute metrics for inferrential stistics; 3) and the metrics themselves. (1) Raw data are contained in the folder 'raw_data'. The folder 'pupil_data contains four sub folders: * edfs: Raw EDF files as produced by the EyeLink. * samples: ASCII file containing data points from the EDF files (so the pupil data). * events: ASCII file contaning event type and timing information. Type: 0 = Scrambled image; 1 = Mountain; 2 = City; 32 = Response (space bar press). * converted: MATLAB files containing the data imported into EEGLAB format. Each block is contained in a separate EEG entry within ALLEEG. The first channel is pupil diamter in pixels. The second and third channel are gaze x and gaze y respectively. Event type and timing are contained in EEG.event. The folder 'behavior' contains a MATLAB file per participant and block that contains the behavioral data. * The relevant matrix here is 'response', which is organized as trials (rows) by variables (columns). Relevant columns are: Column 1 contains trial types (0 = Scrambled image; 1 = Mountain; 2 = City), Column 2 contains key code (32 = space bar; 0 = no response), Column 5 contains RTs (RT = 0 if no response), Comlumn 7 contains response type (-1 = false alarm; 0 = miss; 1 = hit). (2) Processed data are contained in the folder 'processed_data.’ Within are text files that resulted from the sliding window analysis. In all files the first column is participant number, and the second column is block number. All following columns are data points (a value per window). These data served as regressors in all the major analyses. Folder and file names will tell you what's what. (3) Regression coefficients and slopes are contained in 'statistics'. All MATLAB files containing matrices on which the stats were run. * Slopes, indicative of linear changes over time, are contained in 'Slopes_xxx.mat;’ Size: participant (rows) by block (columns). * Linear regression coefficients are contained in 'Linear_betas_diameter/derivative.mat.’ * Quadratic regression coefficients are contained in 'Quadratic_betas_diameter.mat.’ * File suffix _noTOT indicates that these are regression coefficients after taking time on task into account. The matrices that contain regression coefficients are of size Participant by block by measure. Measure: 1 = False alarm; 2 = Slow quintile 3 = RT; 4 = RTCV.In all of the above, the participants are in the same order as in the text files in the folder 'processed_data'. Note that all statistics were run on the block-average of these matrices.
DOI: 10.5061/dryad.q0qq3/1
title: Data_Tit abundance and condition

description: Data on tit abundance (both census and mist net trapping data for all tit species combined and species-specific data), great tit condition (scaled body mass and fat score) and both oat and fat consumption. See the ReadMe file for details.
DOI: 10.5061/dryad.r9q18/1
title: Ant-plant census data

description: Understorey ant-plants and their ant-inhabitants censused in the field from 700 to 1600 metres above sea level in Madang Province, Papua New Guinea.
DOI: 10.5061/dryad.r9q18/2
title: Behavioural data on plant-ants

description: Data recording the protective behaviour of ants on Myristica subalulata from 700 to 1400 metres above sea level
DOI: 10.5061/dryad.r9q18/3
title: Herbivory damage of Myristica subalulata

description: Herbivory damage of Myristica subalulata included in the ant behavioural experiment
DOI: 10.5061/dryad.r9q18/4
title: 1. Network analysis

description: R code for network analysis
DOI: 10.5061/dryad.r9q18/5
title: 2. Behaviour analysis

description: R code for behavioural experiment
DOI: 10.5061/dryad.r9q18/6
title: 3.Herbivory analysis

description: R code for testing the effect of elevation on herbivory damage
DOI: 10.5061/dryad.t2m75/1
title: Dataset S1

description: Annotation details and presence/absence list of plastid genes
DOI: 10.5061/dryad.t2m75/2
title: Dataset_S2

description: Results of the relative rate tests (dN)
DOI: 10.5061/dryad.t2m75/3
title: Dataset_S3

description: Results of relative rate tests (dS)
DOI: 10.5061/dryad.t2m75/4
title: Dataset_S4

description: Results from functional complex-wise tests for relaxation of selection strength and lifestyle effects
DOI: 10.5061/dryad.t2m75/5
title: Dataset_S5

description: Reconstruction of the ancestral states of all plastid genes and functional complexes
DOI: 10.5061/dryad.t3g68/5
title: root_biomass

description: root_biomass.csv- 'plot' is plot number- 'treatment' shows treatment, 'contr' = control, 'new' = short-term manipulation (1 yr), 'old' = long-term manipulation (11 yrs)- 'depth' (shallow=0-20 cm depth, deep=20-40 cm depth)- 'diameter' root diameter (1= &lt;1 mm, 2= 1-2 mm), summed up for analysis- 'biomass' in g per sample (3 samples pooled of each plot, 20 cm depth, 4 cm diameter of corer)- 'mg_cm3' is biomass converted to mg/cm3
DOI: 10.5061/dryad.t3g68/6
title: Root_length_depth_classes

description: Root_length_depth_classes.csv- 'plotnr' shows plot number- 'manip'  1=control, 2=short-term manipulation, 3=long-term manipulation- 'Window' shows depth class: shallow (0-20 cm depth), medium (20-40 cm depth) and deep (deeper than 40 cm)- 'manip' 1=control, 2=short-term manipulation, 3=long-term manipulation- 'length' is per plot summed up length in a certain depth  - 'growth' is per plot summed up length in a certain depth- 'sampling' sampling occasion- 'doy' day of year of sampling occasion
DOI: 10.5061/dryad.t3g68/7
title: species_cover

description: species_cover.csv- 'Plot_nr' shows plot number- 'treatment' 'control' = control, 'new_roof' = short-term manipulation (1 yr), 'old_roof' = long-term manipulation (11 yrs) , 'gradient' is not part of this study- 'species' - 'type'= plant functional type- columns from 1-100 show each inividual pin, 'total' shows total number of hits
DOI: 10.5061/dryad.t8g60/1
title: Data for meta-analyses and regressions
DOI: 10.5061/dryad.th0rj/1
title: Yeast Hsp90 fitness landscape from deep mutational scanning

description: This data was obtained from 1611 engineered mutations in yeast Hsp90 exposed to high salinity, using the EMPIRIC approach. This file contains the deep mutational scanning data from both replicates. Columns are A-E are named unambiguously. Numbers in column F-N, line 1, indicate sampling times of replicate 2 in generations, numbers in column O-W, line 1, indicate sampling times of replicate 1.
DOI: 10.5061/dryad.tk0b8/1
title: Dorsal view of head, antennae and rings 1 – 5 of I. tobini n. sp. (Fig. 2A)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/2
title: Lateral (right) view of head and rings 1 – 5 of I. tobini n. sp. (Figs 2C, 5E)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/3
title: Anterolateral (right) view of head and first leg pair of I. tobini n. sp. (Fig. 2E)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/4
title: Lateral (left) view of head and first leg pair of I. tobini n. sp., antennae broken off at base (Fig. 2F)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.v3s0k/10
title: Constants

description: Model --&gt; constants
DOI: 10.5061/dryad.v3s0k/11
title: ContextCreator

description: Model --&gt; Context creator
DOI: 10.5061/dryad.v3s0k/2
title: NoGainStrategyProduct

description: Weight gain strategy --&gt; No gain strategy
DOI: 10.5061/dryad.v3s0k/3
title: RandomStrategyProduct

description: Weight gain strategy --&gt; Random strategy product
DOI: 10.5061/dryad.v3s0k/4
title: WeightGainStrategyCreator

description: Weight gain strategy --&gt; Weight gain strategy creator
DOI: 10.5061/dryad.v3s0k/5
title: WeightGainStrategyProduct

description: Weight gain strategy --&gt; Weight gain strategy product
DOI: 10.5061/dryad.v3s0k/6
title: WeightGainStrategyType

description: Weight gain strategy --&gt; Weight gain strategy type
DOI: 10.5061/dryad.v3s0k/7
title: WeightStrategyProduct

description: Weight gain strategy --&gt; Weight strategy product
DOI: 10.5061/dryad.v3s0k/8
title: Child

description: Agent --&gt; child
DOI: 10.5061/dryad.v3s0k/9
title: SimpleAgent

description: Agent --&gt; Simple agent
DOI: 10.5061/dryad.vb1pp/3
title: Simulated data (fixed gamma)

description: This zip file contains numerically integrated steady state ornament sizes mat files for many population sizes (indicated in the file name) with fixed gamma = 3/2, s = 1/2. Each row represents one fixed point state.
DOI: 10.5061/dryad.vb1pp/4
title: Simulated data (fixed population size N=1000)

description: This zip file contains 6 sets of numerically integrated ornament sizes for various gamma values. Each mat file within the zip file represents a steady state for N = 1000, s = 1/2.
DOI: 10.5061/dryad.vb1pp/5
title: bimodalTestSimulations

description: This Matlab function tests data for bimodality, using the least-unimodal-unimodal (LUU) distribution for comparison.
DOI: 10.5061/dryad.vb1pp/6
title: ALL-ORNAMENT-DATA (mat files)

description: This zip file contains all the animal ornament data used in statistical tests (this data is replicated in easier-to-read csv file ALL-ORNAMENT-DATA.csv
DOI: 10.5061/dryad.vb1pp/7
title: findGaussianMix

description: This Matlab function computes the best fitting Gaussian mixture model for animal data based on AIC/BIC.
DOI: 10.5061/dryad.vb1pp/8
title: plotHistograms

description: This Matlab function plots histograms of all animal data and overlays kernel density estimates.