cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16994189
title: Caribbean reef fish assemblages are associated with more rapid and recent evolutionary rates

description: In the tropical marine realm, the increasing concentration of species toward the Indo-Australian Archipelago (IAA) has been extensively studied. The literature provides numerous biogeographical scenarios explaining this pronounced longitudinal diversity gradient. However, most proposed scenarios were investigated on a neutral framework and did not consider the potential influence of trait diversification and diversity-dependence processes. In this study, we use a global data set on tropical reef fish distributions, combined with species traits and a comprehensive Actinopterygii phylogeny, to address this question. We apply a statistical approach that simultaneously accounts for the potential influence of both biotic and abiotic factors on recent speciation rates and trait evolution, and ultimately, on species richness distribution. Our results reveal gradients in speciation rates and trait evolution rates that do not match the spatial distribution of species richness. The Caribbean region, while being fourfold species poor compared to the IAA, displayed the greatest rates of recent speciation. Compared to the IAA, the Caribbean also harbored species with, on average, faster recent rates of body size evolution. Finally, regardless of the biogeographic realm considered (Indo-Pacific, Atlantic, or Tropical Eastern Pacific), species richness was found to strongly constrain trait evolutionary rates related to trophic level. Overall, our findings suggest that the Caribbean region has acted as an evolutionary engine for reef fishes in the recent past, and that diversity-dependent mechanisms may have played a key role in shaping biogeographic patterns of trait evolution related to trophic level in tropical reef fishes.
DOI: 10.48324/dandi.000463/0.250829.1248
title: Electrophysiological Recordings in Anesthetized Rats in the Primary Somatosensory Cortex with Phased Ultrasound Array Stimulation

description: In these recordings, we test different intensities and PRFs (pulse repetition frequencies) of ultrasound stimulation using a phased ultrasound array to stimulate the somatosensory cortex of rats anesthetized with 2% isoflurane through inhalation. Recordings are taken using 32 channel Neuronexus electrodes. Ultrasound stimulation is delivered every 2.5 seconds, and each recording has either 200 or 500 trials. Detailed description about this dataset can be found in the following publication. Please cite the paper if you would use a portion of the dataset.  Gao, H., Ramachandran, S., Yu, K., & He, B. (2025). Transcranial Focused Ultrasound Modulates Feedforward and Feedback Cortico-Thalamo-Cortical Pathways by Selectively Activating Excitatory Neurons. The Journal of Neuroscience, 45(23), e2218242025. https://doi.org/10.1523/JNEUROSCI.2218-24.2025
DOI: 10.48324/dandi.000637/0.250829.1249
title: Neural Spike Time Response Data in Anesthetized Rats in the Primary Somatosensory Cortex with Phased Ultrasound Array Stimulation

description: In this study, we investigate the neuronal response to transcranial focused ultrasound (tFUS) stimulation on somatosensory cortex by using a 128-element array transducer. Intracranial recordings were performed using a 32-channel Neuronexus multi-electrode array from somatosensory cortex. Wistar rats were anesthetized using isoflurane at 2%. tFUS with different parameters was applied every 2.5s (±10%). Data was recorded using a TDT system and MUA recordings were sorted using the Plexon Offline Sorter to determine the spike times.This dataset contains spike times of the sorted neural signals and event time for each tFUS trial. In these recordings, we test different pulse repetition frequencies (PRFs) (30Hz, 300Hz, 1500Hz, 3000Hz, and 4500Hz), ultrasound durations (UDs) (100µs, 200µs, and 400µs) of ultrasound stimulation to explore the neuronal response to tFUS. The pulse duration was kept at 67ms. Each recording has 500 trials. Detailed description about this dataset can be found in the following publication. Please cite the paper if you would use a portion of the dataset. Gao, H., Ramachandran, S., Yu, K., & He, B. (2025). Transcranial Focused Ultrasound Modulates Feedforward and Feedback Cortico-Thalamo-Cortical Pathways by Selectively Activating Excitatory Neurons. The Journal of Neuroscience, 45(23), e2218242025. https://doi.org/10.1523/JNEUROSCI.2218-24.2025
DOI: 10.48324/dandi.000946/0.250829.1249
title: Neural Pathways Modulation in the Anesthetized Rat Elicited by Trials of Transcranial Focused Ultrasound Stimulation

description: In these recordings, we recorded neuronal activities from cortical-thalamocortical (CTC) pathway, including the somatosensory cortex (S1) and posteromedial complex (POm) of the thalamus responded to different PRFs (pulse repetition frequencies) or Pulse Durations (PDs) of transcranial ultrasound focused stimulation (tFUS) using a 128-element transducer to stimulate either at S1. Also, we tested the neural responses of the auditory cortex (AC) with tFUS targeting at S1. Recordings for each target are taken using 32-channel Neuronexus electrodes. Ultrasound stimulation is delivered every 2.5 seconds and each recording has 500 trials. The ultrasound duration and pressure level used in each recording is 67ms and ~90kPa. The PRFs and PDs for each recording can be found in the identifier field. For example, in BH494_1500_200_67_5, the PRF is 1500Hz and PD is 200us.Each recording contains two areas (64-channel). The spike time tiling coefficient (STTC) of neurons cross-area and within-area is included in the folders named with STTC.  The detailed description on the data can be found in the following publication:   Gao, H., Ramachandran, S., Yu, K., & He, B. (2025). Transcranial Focused Ultrasound Modulates Feedforward and Feedback Cortico-Thalamo-Cortical Pathways by Selectively Activating Excitatory Neurons. The Journal of Neuroscience, 45(23), e2218242025. https://doi.org/10.1523/JNEUROSCI.2218-24.2025.  If you would use part of the dataset, please cite the above publication.
DOI: 10.48324/dandi.001560/0.250829.1249
title: Cardin_Higley_SFARI_DS1

description: Widefield calcium imaging experiments from awake, head-fixed mouse neocortex.  Groups include control, MeCP2 knock-down, and MeCP2 overexpression animals.
DOI: 10.5517/ccdc.csd.cc2mmpfd
title: CCDC 2431994: Experimental Crystal Structure Determination

description: Related Article: Yanan Liu, Pui Ying Choy, Qiang Tang, Mengdi Wu, Yangzilin Kong, Yongjia Shang, Fuk Yee Kwong, Xinwei He|2025|Org.Lett.|27|8405|doi:10.1021/acs.orglett.5c01856
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.48324/dandi.000945/0.250829.1250
title: Neural Spiking Data in the Awake Rat Somatosensory Cortex Responding to Trials of Transcranial Focused Ultrasound Stimulation

description: In these recordings, we tested different PRFs (pulse repetition frequencies) of ultrasound stimulation using a 128-element random array ultrasound transducer to stimulate the somatosensory cortex of awake head-fixed rats. Chronic electrophysiological recordings were acquired using 32-channel NeuroNexus electrodes (Model: A1x32-Poly3-10mm-50-177-Z32), chronically implanted into the rat brain. Ultrasound stimulation is delivered every 2.5 seconds with a 10% jitter, and each recording has 500 trials. The PRFs tested were 30 Hz, 300 Hz, 1500 Hz, 3000 Hz, and 4500 Hz, each with a 200 microsecond pulse duration and a 67 ms ultrasound duration. Anesthetized files were performed under 2% isoflurane anesthesia for comparison.File InformationAll 10 subjects were male rats, implanted with their chronic electrode at 6 months of age and then recordings taken first at 8-10 months, and then some repeats taken at 12 months. Within each subject's folder are recordings for the different PRFs. Most subjects have 5 recordings within, one for each PRF. Some subjects have duplicate recordings taken a few months after the original ones. A few recordings were not included due to excessive noise in the recordings. Files are named in the format SubjectName_PRF_PulseDuration. Each file contains spike time data with the cell type labels included for each neurons, as well as time series data for the onset of each trial of ultrasound stimulation. Detailed description about this dataset can be found in the following publication. Please cite the paper if you would use a portion of the dataset. Ramachandran, Sandhya et al. “Parameter-dependent cell-type specific effects of transcranial focused ultrasound stimulation in an awake head-fixed rodent model.” Journal of neural engineering vol. 22,2 026022. 19 Mar. 2025, doi:10.1088/1741-2552/adbb1f
DOI: 10.5281/zenodo.16992362
title: University of Hohenheim ARTHUS Raman lidar and Doppler lidar data during EUREC4A campaign (2020)

description: This dataset contains preliminary versions of the variables measured and calculated during the EUREC4A field campaign (https://eurec4a.eu/), using the lidars that the University of Hohenheim deployed on the research vessel Maria S Merian.

Details of the data processing can be found in (Behrendt et al. 2020).

Naming convention:

*TRRL*.cdf: Temperature (K)

*WVRL*.cdf: Water vapor mixing ratio (g/kg)

*BRRL*.cdf: Backscatter ratio (a.u.)

*HALO*.cdf: Vertical wind velocity (m/s)

*LHF*.cdf: Latent heat flux (K)

*SHF*.cdf: Sensible heat flux (W/m^2)
DOI: 10.5281/zenodo.16992363
title: University of Hohenheim ARTHUS Raman lidar and Doppler lidar data during EUREC4A campaign (2020)

description: This dataset contains preliminary versions of the variables measured and calculated during the EUREC4A field campaign (https://eurec4a.eu/), using the lidars that the University of Hohenheim deployed on the research vessel Maria S Merian.

Details of the data processing can be found in (Behrendt et al. 2020).

Naming convention:

*TRRL*.cdf: Temperature (K)

*WVRL*.cdf: Water vapor mixing ratio (g/kg)

*BRRL*.cdf: Backscatter ratio (a.u.)

*HALO*.cdf: Vertical wind velocity (m/s)

*LHF*.cdf: Latent heat flux (K)

*SHF*.cdf: Sensible heat flux (W/m^2)
DOI: 10.48324/dandi.001199/0.250829.1250
title: Neural Pathways Modulation in the Anesthetized Rat Elicited by Trials of Transcranial Focused Ultrasound Stimulation

description: In these recordings, we recorded neuronal activities from cortical-thalamocortical (CTC) pathway, including the somatosensory cortex (S1) and posteromedial complex (POm) of the thalamus responded to different Pulse Repetition Frequencies (PRFs ) or Pulse Durations (PDs) and Pressure Levels of transcranial ultrasound focused stimulation (tFUS) using a 128-element transducer to stimulate either at S1or PoM.  Recordings for S1 are taken using 64-channel Cambridge or Neuronexus electrodes and recordings for POm are taken using 32-channel Nueronexus electrodes. Ultrasound stimulation is delivered every 2.5 seconds and each recording has 500 trials. The Ultrasound Duration (UD) and pressure level used in each recording is 67ms. The PRFs, PDs and pressure levels for each recording can be found in the identifier field. For example, in BH596_3000_200_67_10, the PRF is 3000Hz, PD is 200us and pressure level is 10V.  Detailed description about this dataset can be found in the following publication. Please cite the paper if you would use a portion of the dataset. Gao, H., Ramachandran, S., Yu, K., & He, B. (2025). Transcranial Focused Ultrasound Modulates Feedforward and Feedback Cortico-Thalamo-Cortical Pathways by Selectively Activating Excitatory Neurons. The Journal of Neuroscience, 45(23), e2218242025. https://doi.org/10.1523/JNEUROSCI.2218-24.2025
DOI: 10.5281/zenodo.16779955
title: Data for "A new approach to measuring invention commercialization: An application to the SBIR program"

description: This database collects and links U.S. federally funded awards to U.S. utility patents, and such patents to web pages signaling commercialization outcomes. It forms the basis of the data used in our paper, published in Research Policy (10.1016/j.respol.2025.105302).

Specifically, this database contains information on awards provided by the U.S. Department of Defense (DoD) within the Small Business Innovation Research (SBIR) and Small Business Technology Transfer Program (STTR) programs from 1984 to 2018.The database is composed of three main elements: awards, patents, and web pages. Information about the awards comes from the Defense Contract Action Data System (DCADS), for the years 1984-2001, and from USAspending.gov, for the years 2001-2018. Most information related to patents comes from PatentsView, and some specific details are obtained from the Patent Examination Research Dataset (PatEx) or from PATSTAT. The information about web pages has been collected by the authors from web crawls.

The paper contains a companion Appendix that provides additional supporting information.
DOI: 10.5281/zenodo.16992376
title: MSCA TaphArt Project -  Photographs and videos of the fieldworks carried out in the Blombos cave area (South Africa) - January 2024
title: Fieldworkd - January 2024

description: Data collected in the framework of the MSCA project “TaphArt: exploring the potential existence of rock art paintings in the Middle Stone Age of southern Africa and its destruction due to the action of taphonomic processes” (Grant Agreement No. 101109977, EC signature date: 7 April 2023; start date: 1 September 2023; end date: 31 August 2025). The project is funded by the European Union under the Marie Skłodowska-Curie Actions (MSCA) of the Horizon Europe research and innovation programme, 

The project investigates the possible absence of Middle Stone Age rock art in southern Africa—specifically at Blombos Cave—and whether it is the result of taphonomic processes rather than cultural choices. It adopts an innovative, interdisciplinary approach drawing on archaeology, paleoenvironmental science, atmospheric science, material science, and analytical chemistry 

This dataset includes a collection of photographs and videos captured during fieldwork to gather raw materials for accelerated aging experiments. Fieldwork was conducted in the area of Blombos Cave (South Africa) by Dr Neemias Santos da Rosa, in collaboration with geologist Pieter-Jan Grabe. All photographs and videos are authored by Dr Neemias Santos da Rosa.
DOI: 10.5281/zenodo.16994157
title: MSCA TaphArt Project -  Photographs and videos of the fieldworks carried out in the Blombos cave area (South Africa) - January 2024
title: Fieldworkd - January 2024

description: Data collected in the framework of the MSCA project “TaphArt: exploring the potential existence of rock art paintings in the Middle Stone Age of southern Africa and its destruction due to the action of taphonomic processes” (Grant Agreement No. 101109977, EC signature date: 7 April 2023; start date: 1 September 2023; end date: 31 August 2025). The project is funded by the European Union under the Marie Skłodowska-Curie Actions (MSCA) of the Horizon Europe research and innovation programme, 

The project investigates the possible absence of Middle Stone Age rock art in southern Africa—specifically at Blombos Cave—and whether it is the result of taphonomic processes rather than cultural choices. It adopts an innovative, interdisciplinary approach drawing on archaeology, paleoenvironmental science, atmospheric science, material science, and analytical chemistry 

This dataset includes a collection of photographs and videos captured during fieldwork to gather raw materials for accelerated aging experiments. Fieldwork was conducted in the area of Blombos Cave (South Africa) by Dr Neemias Santos da Rosa, in collaboration with geologist Pieter-Jan Grabe. All photographs and videos are authored by Dr Neemias Santos da Rosa.
DOI: 10.3886/e237001
title: ECIN Replication Package for "Who Stands Up to Persuade? Voluntary Influencers in Public Support for Pigouvian Taxation"

description: ECIN Replication Package for "Who Stands Up to Persuade? Voluntary Influencers in Public Support for Pigouvian Taxation"
DOI: 10.3886/e237001v2
title: ECIN Replication Package for "Who Stands Up to Persuade? Voluntary Influencers in Public Support for Pigouvian Taxation"

description: ECIN Replication Package for "Who Stands Up to Persuade? Voluntary Influencers in Public Support for Pigouvian Taxation"
DOI: 10.5281/zenodo.12666196
title: Simulations for the COCCON City Campaign Thessaloniki 2021/22
DOI: 10.5281/zenodo.16993930
title: Simulations for the COCCON City Campaign Thessaloniki 2021/22
DOI: 10.5281/zenodo.16994337
title: IRT Result
DOI: 10.5281/zenodo.16994336
title: IRT Result
DOI: 10.25607/obis.export.55a1b2d3
title: OBIS occurence export for Bridges & Howell (2025): Prioritisation of ocean biodiversity data collection to deliver a sustainable ocean.
DOI: 10.15468/dl.mbwd3h
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Strabomantis laticorpus"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004777-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29108795.v1
title: Surface THG raw data.zip

description: Surface RATHG generated raw data from SBHM
DOI: 10.6084/m9.figshare.29108795
title: Surface THG raw data.zip

description: Surface RATHG generated raw data from SBHM
DOI: 10.6084/m9.figshare.29108798
title: BUlk THG raw data.zip

description: Bulk RATHG generated raw data from SBHM
DOI: 10.6084/m9.figshare.29108798.v1
title: BUlk THG raw data.zip

description: Bulk RATHG generated raw data from SBHM
DOI: 10.15468/dl.r7c8hq
title: Occurrence Download

description: A dataset containing 4206 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Elevation 35.0-90.0m",
 "Geometry POLYGON((-73.95027 7.53682,-73.96602 7.4244,-73.96917 7.34319,-74.00382 7.19732,-73.95657 7.05043,-73.88728 6.96916,-73.8117 6.96916,-73.71721 6.96916,-73.72666 7.08482,-73.77075 7.16295,-73.83059 7.24609,-73.7928 7.40541,-73.7613 7.50534,-73.72351 7.68953,-73.7613 7.78003,-73.84004 7.82372,-73.93453 7.70201,-73.94398 7.57403,-73.95027 7.53682))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Amblystegiaceae, Trichotheliaceae, Sematophyllaceae, Arthoniaceae, Aspidotheliaceae, Atheliaceae, Candelariaceae, Cladiaceae, Cladoniaceae, Coccocarpiaceae, Collemataceae, Crocyniaceae, Fissidentaceae, Gomphillaceae, Graphidaceae, Lepidoziaceae, Leucobryaceae, Lobariaceae, Octoblepharaceae, Parmeliaceae, Phyllobatheliaceae, Pilocarpaceae, Pilotrichaceae, Ramalinaceae, Roccellaceae)"
 ]
}

 The dataset includes 4206 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004778-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.agcjcu
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Abactochromis labrosus, Acanthocleithron chapini, Acanthopagrus berda, Acapoeta tanganicae, Acentrogobius audax, Acentrogobius nebulosus, Acentrogobius therezieni, Acipenser sturio, Afronandus sheljuzhkoi, Afronemacheilus abyssinicus, Agonostomus catalai, Agonostomus telfairii, Alburnus alburnus, Alcolapia alcalica, Alcolapia grahami, Alcolapia latilabris, Alcolapia ndalalani, Alestes ansorgii, Alestes baremoze, Alestes bouboni, Brycinus nurse, Alestes dentex, Alestes liebrechtsii, Alestes macrophthalmus, Alestes stuhlmannii, Alestopetersius bifasciatus, Alestopetersius brichardi, Alestopetersius caudalis, Alestopetersius compressus, Alestopetersius hilgendorfi, Alestopetersius leopoldianus, Alestopetersius nigropterus, Alestopetersius smykalai, Alestopetersius tumbensis, Allenbatrachus meridionalis, Alosa agone, Alosa algeriensis, Alosa alosa, Alosa fallax, Alticorpus geoffreyi, Alticorpus macrocleithrum, Alticorpus mentale, Alticorpus peterdaviesi, Alticorpus profundicola, Altolamprologus calvus, Altolamprologus compressiceps, Neolamprologus fasciatus, Amarginops platus, Ambassis ambassis, Ambassis dussumieri, Ambassis fontoynonti, Ambassis gymnocephalus, Ambassis natalensis, Ambassis urotaenia, Amphilius atesuensis, Amphilius athiensis, Amphilius brevis, Amphilius caudosignatus, Amphilius cryptobullatus, Amphilius dimonikensis, Amphilius grandis, Amphilius jacksonii, Amphilius kakrimensis, Amphilius korupi, Amphilius lamani, Amphilius lampei, Amphilius laticaudatus, Amphilius lentiginosus, Amphilius longirostris, Amphilius lujani, Amphilius maesii, Amphilius mamonekenensis, Amphilius natalensis, Amphilius opisthophthalmus, Amphilius platychir, Amphilius pulcher, Amphilius rheophilus, Amphilius uranoscopus, Amphilius zairensis, Anaecypris punica, Pseudophoxinus punicus, Ancharius fuscus, Ancharius griseus, Andersonia leptura, Anguilla anguilla, Anguilla bengalensis, Anguilla bicolor, Anguilla marmorata, Anguilla mossambica, Anomalochromis thomasi, Aphanius apodus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((34.8752 27.7528,35.2765 29.0599,28.1382 29.0599,28.1382 20.0599,37.1382 20.0599,37.1382 22.4869,36.4196 23.1029,36.7113 23.3743,36.7246 23.7183,35.8613 24.5048,35.1435 25.653,35.0599 25.8405,35.3478 26.1707,35.2694 26.5949,34.978 26.7967,34.4974 26.7726,34.5022 27.2926,34.8752 27.7528))"
 ]
}

 The dataset includes 91 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004780-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12898863
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.8448sj
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphibalanus improvisus",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004781-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/83td-px04
title: "SmartMeter Daily Profiles ActivePower and Metrics March 2023"

description: "This dataset contains smart meter measurements recorded during March 2023, collected from residential prosumer equipment. The data includes active power (P), phase voltages (U1, U2, U3), and phase currents (I1, I2, I3), sampled at a 1-second resolution. Each daily file contains the corresponding time series graph of active power and a summary of minimum, mean, and maximum values for all monitored parameters. The dataset is intended to support research in the field of energy consumption analysis, edge-computing applications, demand forecasting, and energy community management. It can be useful for testing algorithms in load profiling, anomaly detection, and optimization of distributed energy resources."