cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4022281
title: JET-ILW Linear Pedestal ETG Data

description: Data associated with paper 'Toroidal and slab ETG instability dominance in the linear spectrum of JET-ILW pedestals.' See attached Readme file for instructions.
description: JFP is supported by EPSRC Scholarship No 3000207032. FIP and MB are supported in part by the Engineering and Physical Sciences Research Council (EPSRC) [Grant Number EP/R034737/1]. CMR is supported in part by the RCUK Energy-Programme (grant number EP/EPI501045). PGI is supported by an EU H2020 grant, agreement No 3000207035. Computational time provided by Plasma HEC Consortium EPSRC (grant number EP/L000237/1). This work has been carried out within the framework of the EUROfusion Consortium and has received funding from the Euratom research and training programme 2014-2018 and 2019-2020 under grant agreement No 633053 and from the RCUK Energy Programme (grant number EP/T012250/1 and EP/P012450/1). Withal, this work has been carried out within the framework of the Contract for the Operation of the JET Facilities and has received funding from the European Union's Horizon 2020 research and innovation programme. The views and opinions expressed herein do not necessarily reflect those of the European Commission. The authors acknowledge EUROfusion, the EUROfusion High Performance Computer (Marconi-Fusion), the use of ARCHER through the Plasma HEC Consortium EPSRC grant numbers EP/L000237/1 and EP/R029148/1 under the projects e281-gs2, and software support from Joseph Parker through the Plasma-CCP Network under EPSRC grant number EP/M022463/1. This work also received computational support from Joseph Parker of CoSeC (the Computational Science Centre for Research Communities), funded through CCP-Plasma/Plasma-HEC EPSRC grants EP/R029148/1 and EP/M022463/1. This work was supported by the US Department of Energy through grant DE-FG02-93ER-54197. JFP acknowledges travel support from Merton College, Oxford. We are grateful for the hospitality of the Wolfgang Pauli Institute, University of Vienna.
DOI: 10.5281/zenodo.4023897
title: Thesis

description: public data from my thesis
DOI: 10.5281/zenodo.4023896
title: Thesis

description: public data from my thesis
DOI: 10.21227/dabc-py33
title: Facial Masks and Respirators Database (FMR-DB)

description: Recently, the coronavirus pandemic has made the use of facial masks and respirators common, the former to reduce the likelihood of spreading saliva droplets and the latter as Personal Protective Equipment (PPE). As a result, this caused problems for the existing face detection algorithms. For this reason, and for the implementation of other more sophisticated systems, able to recognize the type of facial mask or respirator and to react given this information, we created the Facial Masks and Respirators Database (FMR-DB), that, unlike the other database released so far, also has an accurate classification of the most important types of facial masks and respirators.
DOI: 10.21227/9w31-pc22
title: Facial Masks and Respirators Database (FMR-DB)

description: Recently, the coronavirus pandemic has made the use of facial masks and respirators common, the former to reduce the likelihood of spreading saliva droplets and the latter as Personal Protective Equipment (PPE). As a result, this caused problems for the existing face detection algorithms. For this reason, and for the implementation of other more sophisticated systems, able to recognize the type of facial mask or respirator and to react given this information, we created the Facial Masks and Respirators Database (FMR-DB), that, unlike the other database released so far, also has an accurate classification of the most important types of facial masks and respirators.
DOI: 10.6084/m9.figshare.12941846.v1
title: test1

description: test figshare
DOI: 10.6084/m9.figshare.12941846
title: test1

description: test figshare
DOI: 10.6084/m9.figshare.12363560.v1
title: Simulink Projects for Empirical Research

description: This dataset contains 1736 Matlab/Simulink models from 194 projects hosted on GitHub, MathWorks' Matlab Central and various other project hosting services. The dataset contains folders for the 194 projects with the model files in their original project structure. In addition to the model files, the corpus offers metadata for the models as well as, in an aggregated way, for the projects, provided as JSON files. It should be noted that two projects are not open-source and contain a license, which is why only the meta-data is provided for these.<br>
DOI: 10.6084/m9.figshare.12941747
title: Data for lithology identification from well log curves

description: Source data used to train model. Original dataset can be downloaded at https://www.geolink-s2.com.
DOI: 10.5281/zenodo.4020352
title: HyLFM Small Beads 1

description: Dataset Small Beads 1 (test data) used in Deep learning-enhanced light-field imaging with continuous validation<br> https://doi.org/10.1101/2020.07.30.228924
DOI: 10.5281/zenodo.4020351
title: HyLFM Small Beads 1

description: Dataset Small Beads 1 (test data) used in Deep learning-enhanced light-field imaging with continuous validation<br> https://doi.org/10.1101/2020.07.30.228924
DOI: 10.34740/kaggle/dsv/1479641
title: COVID-19 cases by Continent
DOI: 10.5281/zenodo.4020404
title: HyLFM Small Beads 2

description: Dataset Small Beads 2 (train data) used in Deep learning-enhanced light-field imaging with continuous validation<br> https://doi.org/10.1101/2020.07.30.228924
DOI: 10.5281/zenodo.4020403
title: HyLFM Small Beads 2

description: Dataset Small Beads 2 (train data) used in Deep learning-enhanced light-field imaging with continuous validation<br> https://doi.org/10.1101/2020.07.30.228924
DOI: 10.21227/snjb-f045
title: Facial Masks and Respirators Database (FMR-DB)

description: Recently, the coronavirus pandemic has made the use of facial masks and respirators common, the former to reduce the likelihood of spreading saliva droplets and the latter as Personal Protective Equipment (PPE). As a result, this caused problems for the existing face detection algorithms. For this reason, and for the implementation of other more sophisticated systems, able to recognize the type of facial mask or respirator and to react given this information, we created the Facial Masks and Respirators Database (FMR-DB), that, unlike the other database released so far, also has an accurate classification of the most important types of facial masks and respirators.
DOI: 10.21227/grew-9f20
title: Facial Masks and Respirators Database (FMR-DB)

description: Recently, the coronavirus pandemic has made the use of facial masks and respirators common, the former to reduce the likelihood of spreading saliva droplets and the latter as Personal Protective Equipment (PPE). As a result, this caused problems for the existing face detection algorithms. For this reason, and for the implementation of other more sophisticated systems, able to recognize the type of facial mask or respirator and to react given this information, we created the Facial Masks and Respirators Database (FMR-DB), that, unlike the other database released so far, also has an accurate classification of the most important types of facial masks and respirators.
DOI: 10.25345/c5kx9h
title: MassIVE MSV000086120 - GNPS Soft Coral Lobophytum in Sabang Island 2020
title: GNPS Soft Coral Lobophytum species in Sabang Island 2020
DOI: 10.5281/zenodo.3941125
title: Matlab code for a multipolar decomposition of optical forces

description: This dataset supplements Figure 5 from the publication "Multipolar Origin of the Unexpected Transverse<br> Force Resulting from Two-Wave Interference*" by Karim Achouri, Andrei Kiselev, and Olivier J. F. Martin. Here, we provide the code for the multipolar analysis of the optical force based on the vector spherical harmonic decomposition. Based on the Mie solution, electric fields can be obtained numerically in the far-field by using the software developed by Dr. Karim Achouri https://github.com/kachourim/MieScatteringPEC. This code analyzes the far-field scattered by a perfect electric conductor sphere placed in vacuum for different sphere radii. In the framework of the Maxwell stress tensor, we find the optical force acting on a sphere along the z-direction in the illumination configuration presented in Figure 1*. The use of the vector spherical decomposition allows to observe contributions from different multipolar interactions. In this code,we analyze the force appearing as a result of the interaction between electric dipole aligned along x, px, and electric quadrupole with components xz, Qexz and compare it with the total force along the z-axis appearing as a result of interaction between all multipoles supported by the sphere with given radius.
DOI: 10.5281/zenodo.3941124
title: Matlab code for a multipolar decomposition of optical forces

description: This dataset supplements Figure 5 from the publication "Multipolar Origin of the Unexpected Transverse<br> Force Resulting from Two-Wave Interference*" by Karim Achouri, Andrei Kiselev, and Olivier J. F. Martin. Here, we provide the code for the multipolar analysis of the optical force based on the vector spherical harmonic decomposition. Based on the Mie solution, electric fields can be obtained numerically in the far-field by using the software developed by Dr. Karim Achouri https://github.com/kachourim/MieScatteringPEC. This code analyzes the far-field scattered by a perfect electric conductor sphere placed in vacuum for different sphere radii. In the framework of the Maxwell stress tensor, we find the optical force acting on a sphere along the z-direction in the illumination configuration presented in Figure 1*. The use of the vector spherical decomposition allows to observe contributions from different multipolar interactions. In this code,we analyze the force appearing as a result of the interaction between electric dipole aligned along x, px, and electric quadrupole with components xz, Qexz and compare it with the total force along the z-axis appearing as a result of interaction between all multipoles supported by the sphere with given radius.
DOI: 10.5517/ccdc.csd.cc23qykc
title: CCDC 1958473: Experimental Crystal Structure Determination

description: Related Article: You-Sheng Cai, Wan-Xiang Cui, Wei Tang, Yue-Wei Guo|2020|Bioorg.Chem.|104|104167|doi:10.1016/j.bioorg.2020.104167
description: Related Article: Fan Yang, Song-Wei Li, Jun Zhang, Lin-Fu Liang, Yan-Hua Lu, Yue-Wei Guo|2020|Bioorg.Chem.|96|103636|doi:10.1016/j.bioorg.2020.103636
DOI: 10.5286/isis.e.rb1990181-1
title: Crystal structure of Sr2NaIO6
DOI: 10.5286/isis.e.rb1990182-1
title: Crystal structure of Ca2NaIO6
DOI: 10.5286/isis.e.rb1920341-1
title: Structure determination of compounds for the immobilisation of Iodine-129 and Technetium-99

description: 99Tc (half life 2.13 x 105 years) and 129I (half life 15.7 x 106 years) are abundant and long lived products of nuclear fission, with yields of 6% and 0.7% respectively for thermal fission of 235U. These radionuclides are of particular concern in closed nuclear fuel cycles, since the long half life and high production rate, combined with solubility and bioaccumulation. Future advanced nuclear fuel recycle strategies demand disposition of 99Tc and 129I in a robust wasteform, and isolation from the bio-sphere, in a deep geological disposal facility for 10E6 - 10E7 years. We have endeavoured to address this challenge, exploring the synthesis, structure and properties of ceramics for 129I and 99Tc disposition. Here, we propose to determine the structures of seven such ceramic compounds, within three families, using neutron powder diffraction, with natural isotopic abundance I and 99Tc.
DOI: 10.6084/m9.figshare.12941774
title: Supplementary Material for: Percutaneous-Assisted versus Laparoscopic Hysterectomy: A Prospective Comparison

description: <b><i>Objective:</i></b> To evaluate the feasibility of percutaneous approach, we prospectively compared our experience in percutaneous-assisted hysterectomy (PSS-H) with that in a series of laparoscopic hysterectomies (LPS-Hs). <b><i>Methods:</i></b> In this multicentric cohort study, from May 2015 to October 2017, 160 patients affected by benign and malignant gynecological conditions were considered eligible for minimally invasive surgery (MIS): 80 patients received PSS-H and 80 LPS-H. In each group, 30 cases of low-/intermediate-risk endometrial cancer were enrolled. For both groups, we documented preoperative outcomes, postoperative pain, and cosmetic outcomes. <b><i>Results:</i></b> No statistically significant differences were noted in baseline characteristics or operative time. We observed significant differences in estimated blood loss: median of 50 cc (PSS-H) and 100 cc (LPS-H) (<i>p</i> = 0.0001). In LPS-H, we reported 4 (5.0%) intraoperative complications and 1 (1.3%) in PSS-H. Thirty-day complications were 4 (5%) in PSS-H and 11 (13.8%) in LPS-H (<i>p</i> = 0.058). No significative differences were found in visual analog scale score, despite a relevant disparity in cosmetic outcome (<i>p</i> = 0.0001). For oncological cases, the 2 techniques had comparable intra- and postoperative outcomes and oncological accuracy. <b><i>Conclusions:</i></b> In this study, we reported that PSS-H is comparable to LPS-H for intra- and perioperative outcomes and postoperative pain, while PSS-H seems to be superior in cosmetic outcomes and patient satisfaction. PSS-H may represent a valid alternative in ultra-MIS for benign gynecological conditions and low-/intermediate-risk endometrial cancer.
DOI: 10.6084/m9.figshare.12941774.v1
title: Supplementary Material for: Percutaneous-Assisted versus Laparoscopic Hysterectomy: A Prospective Comparison

description: <b><i>Objective:</i></b> To evaluate the feasibility of percutaneous approach, we prospectively compared our experience in percutaneous-assisted hysterectomy (PSS-H) with that in a series of laparoscopic hysterectomies (LPS-Hs). <b><i>Methods:</i></b> In this multicentric cohort study, from May 2015 to October 2017, 160 patients affected by benign and malignant gynecological conditions were considered eligible for minimally invasive surgery (MIS): 80 patients received PSS-H and 80 LPS-H. In each group, 30 cases of low-/intermediate-risk endometrial cancer were enrolled. For both groups, we documented preoperative outcomes, postoperative pain, and cosmetic outcomes. <b><i>Results:</i></b> No statistically significant differences were noted in baseline characteristics or operative time. We observed significant differences in estimated blood loss: median of 50 cc (PSS-H) and 100 cc (LPS-H) (<i>p</i> = 0.0001). In LPS-H, we reported 4 (5.0%) intraoperative complications and 1 (1.3%) in PSS-H. Thirty-day complications were 4 (5%) in PSS-H and 11 (13.8%) in LPS-H (<i>p</i> = 0.058). No significative differences were found in visual analog scale score, despite a relevant disparity in cosmetic outcome (<i>p</i> = 0.0001). For oncological cases, the 2 techniques had comparable intra- and postoperative outcomes and oncological accuracy. <b><i>Conclusions:</i></b> In this study, we reported that PSS-H is comparable to LPS-H for intra- and perioperative outcomes and postoperative pain, while PSS-H seems to be superior in cosmetic outcomes and patient satisfaction. PSS-H may represent a valid alternative in ultra-MIS for benign gynecological conditions and low-/intermediate-risk endometrial cancer.
DOI: 10.7910/dvn/el3umu/u5x5bm
title: Antibiosis assessment.tab

description: :unav
DOI: 10.7910/dvn/el3umu/ah7iou
title: Fig 4 data.tab

description: :unav
DOI: 10.6084/m9.figshare.12941789
title: Supplementary Material for: Urinary Apolipoprotein C3 Is a Potential Biomarker for Alzheimer’s Disease

description: <b><i>Introduction:</i></b> Biomarkers of Alzheimer’s disease (AD) that can easily be measured in routine health checkups are desirable. Urine is a source of biomarkers that can be collected easily and noninvasively. We previously reported on the comprehensive profile of the urinary proteome of AD patients and identified proteins estimated to be significantly increased or decreased in AD patients by a label-free quantification method. The present study aimed to validate urinary levels of proteins that significantly differed between AD and control samples from our proteomics study (i.e., apolipoprotein C3 [ApoC3], insulin-like growth factor-binding protein 3 [Igfbp3], and apolipoprotein D [ApoD]). <b><i>Methods:</i></b> Enzyme-linked immunosorbent assays (ELISAs) were performed using urine samples from the same patient and control groups analyzed in the previous proteomics study (18 AD and 18 controls, set 1) and urine samples from an independent group of AD patients and controls (13 AD, 5 mild cognitive impairment [MCI], and 32 controls) from the National Center for Geriatrics and Gerontology Biobank (set 2). <b><i>Results:</i></b> In set 1, the crude urinary levels of ApoD, Igfbp3, and creatinine-adjusted ApoD were significantly higher in the AD group relative to the control group (<i>p</i> = 0.003, <i>p</i> = 0.002, and <i>p</i> = 0.019, respectively), consistent with our previous proteomics results. In set 2, however, the crude urinary levels of Igfbp3 were significantly lower in the AD+MCI group than in the control group (<i>p</i> = 0.028), and the levels of ApoD and ApoC3 did not differ significantly compared to the control group. Combined analysis of all samples revealed creatinine-adjusted ApoC3 levels to be significantly higher in the AD+MCI group (<i>p</i> = 0.015) and the AD-only group (<i>p</i> = 0.011) relative to the control group. <b><i>Conclusion:</i></b> ApoC3 may be a potential biomarker for AD, as validated by ELISA. Further analysis of ApoC3 as a urinary biomarker for AD is warranted.
DOI: 10.5281/zenodo.4024047
title: Adaptation by copy number variation increases insecticide resistance in the fall armyworm (vcf files)

description: Here, I deposite vcf files used for a paper, entitled 'Adaptation by copy number variation increases insecticide resistance in the fall armyworm'. genotype.vcf and SNP.filtered.vcf.gz have the information of CNVs and SNPs, respectively.
DOI: 10.5281/zenodo.4024046
title: Adaptation by copy number variation increases insecticide resistance in the fall armyworm (vcf files)

description: Here, I deposite vcf files used for a paper, entitled 'Adaptation by copy number variation increases insecticide resistance in the fall armyworm'. genotype.vcf and SNP.filtered.vcf.gz have the information of CNVs and SNPs, respectively.
DOI: 10.5281/zenodo.4024067
title: The near‐infrared autofluorescence fingerprint of the brain

description: The brain is a vital organ involved in most of the central nervous system disorders. Their diagnosis and treatment require fast, cost‐effective, high‐resolution and high‐sensitivity imaging. The combination of a new generation of luminescent nanoparticles and imaging systems working in the second biological window (near‐infrared II [NIR‐II]) is emerging as a reliable alternative. For NIR‐II imaging to become a robust technique at the preclinical level, full knowledge of the NIR‐II brain autofluorescence, responsible for the loss of image resolution and contrast, is required. This work demonstrates that the brain shows a peculiar infrared autofluorescence spectrum that can be correlated with specific molecular components. The existence of particular structures within the brain with well‐defined NIR autofluorescence fingerprints is also evidenced, opening the door to in vivo anatomical imaging. Finally, we propose a rational selection of NIR luminescent probes suitable for low‐noise brain imaging based on their spectral overlap with brain autofluorescence.
DOI: 10.5281/zenodo.4024066
title: The near‐infrared autofluorescence fingerprint of the brain

description: The brain is a vital organ involved in most of the central nervous system disorders. Their diagnosis and treatment require fast, cost‐effective, high‐resolution and high‐sensitivity imaging. The combination of a new generation of luminescent nanoparticles and imaging systems working in the second biological window (near‐infrared II [NIR‐II]) is emerging as a reliable alternative. For NIR‐II imaging to become a robust technique at the preclinical level, full knowledge of the NIR‐II brain autofluorescence, responsible for the loss of image resolution and contrast, is required. This work demonstrates that the brain shows a peculiar infrared autofluorescence spectrum that can be correlated with specific molecular components. The existence of particular structures within the brain with well‐defined NIR autofluorescence fingerprints is also evidenced, opening the door to in vivo anatomical imaging. Finally, we propose a rational selection of NIR luminescent probes suitable for low‐noise brain imaging based on their spectral overlap with brain autofluorescence.
DOI: 10.5281/zenodo.3946462
title: TaxGraph - A Knowledge Graph of Multi-National Companies and their Relationships

description: The taxation of multi-national companies is a complex field, since it is influenced by the legislation of several states. Laws in different states may have unforeseen interaction effects, which can be exploited by allowing multi-national companies to minimize and avoid taxes. Thus, we created a knowledge graph of multi-national companies and their relationships. Many commonly known tax avoidance strategies can be formulated as subgraph queries to this graph, which allows for identifying companies using certain strategies. Moreover, we can identify anomalies in the graph which hint at potential tax avoidance strategies.
DOI: 10.5281/zenodo.3946461
title: TaxGraph - A Knowledge Graph of Multi-National Companies and their Relationships

description: The taxation of multi-national companies is a complex field, since it is influenced by the legislation of several states. Laws in different states may have unforeseen interaction effects, which can be exploited by allowing multi-national companies to minimize and avoid taxes. Thus, we created a knowledge graph of multi-national companies and their relationships. Many commonly known tax avoidance strategies can be formulated as subgraph queries to this graph, which allows for identifying companies using certain strategies. Moreover, we can identify anomalies in the graph which hint at potential tax avoidance strategies.
DOI: 10.5281/zenodo.4023972
title: DATA for Land Surface Model influence on the simulated climatologies of temperature and precipitation extremes in the WRF v.3.9 model over North America

description: Code and daily temperature and precipitation outputs used to estimate climate extreme indices in García-García et al. 2020. García-García A., Cuesta-Valero F.J., Beltrami H., González-Rouco J.F., García-Bustamante E., and Finnis J. "Land Surface Model influence on the simulated climatologies of temperature and precipitation extremes in the WRF v.3.9 model over North America" submitted to Geocientific Model Development. 2020.
DOI: 10.5281/zenodo.4020486
title: Ooh Na Na

description: This is a gzipped three-column TSV file that has 138,749,325 prefixes, identifiers, and names for lots of biomedical entities, drawing from the OBO Foundry, ontologies in the Ontology Lookup Service, and many other nomenclature consortia that just haven't made it to the prime-time of standardized goodness. Ultimately, this dataset helps answer the question: what's my name? It's really a lot of work to get this stuff, so I tried to make it easy. It was generated with the following code in the shell: <pre>pip install pyobo obo database names</pre> More information on how and why this resource was made is available at https://cthoyt.com/2020/04/18/ooh-na-na.html.
description: The 1.2.0 version includes the addition of PubChem, ChEBML, and NPASS