cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fshzhd
title: Occurrence Download

description: A dataset containing 9440 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Norway",
 "OccurrenceStatus is Present",
 "TaxonKey is Chaetodermatidae",
 "Year 2015-2025"
 ]
}

 The dataset includes 9440 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007437-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d33j5x
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "TaxonKey is Phytophthora ramorum"
 ]
}

 The dataset includes 149 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007439-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16949997
title: The IHA database of human geometries including torso, head and complete outer ears for acoustic research

description: This is the second version of the IHA database, which is being created in the project HAPPAA C1 funded by the Deutsche Forschungsgemeinschaft (DFG) – Projektnummer 352015383 - SFB 1330 C1. (https://uol.de/en/sfb-1330-hearing-acoustics)

The database includes the entire sample of all 58 human geometries comprising the torso, head and the entire outer ear including the ear canal and eardrum. The data are available in the 3D object formats 'stl'. This second version incorporates the ten geometries of the first version. 
description: Funded by the Deutsche Forschungsgemeinschaft (DFG) – Project Nr. 352015383 – SFB 1330 HAPPAA C1.
DOI: 10.5281/zenodo.5528765
title: The IHA database of human geometries including torso, head and complete outer ears for acoustic research

description: This is the second version of the IHA database, which is being created in the project HAPPAA C1 funded by the Deutsche Forschungsgemeinschaft (DFG) – Projektnummer 352015383 - SFB 1330 C1. (https://uol.de/en/sfb-1330-hearing-acoustics)

The database includes the entire sample of all 58 human geometries comprising the torso, head and the entire outer ear including the ear canal and eardrum. The data are available in the 3D object formats 'stl'. This second version incorporates the ten geometries of the first version. 
description: Funded by the Deutsche Forschungsgemeinschaft (DFG) – Project Nr. 352015383 – SFB 1330 HAPPAA C1.
DOI: 10.15468/dl.mafb9e
title: Occurrence Download

description: A dataset containing 38159333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is India",
 "OccurrenceStatus is Present",
 "Year 2021-2025"
 ]
}

 The dataset includes 38159333 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007404-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/iyrh76
title: Zwartewaterland Hasselt Nevengeul Nevengeul Genne Overwater

description: &lt;p&gt;ADC ArcheoProjecten heeft een Inventariserend Veldonderzoek in de vorm van proefsleuven en een Inventariserend Veldonderzoek in de vorm van proefsleuven – variant archeologische begeleiding uitgevoerd voor het plangebied Nevengeul Genne Overwater in Hasselt in de gemeente Zwartewaterland. Rijkswaterstaat voert in de Rijkswateren projecten uit om te zorgen dat deze wateren in 2027 aan de Europese Kaderrichtlijn Water kunnen voldoen. Eén van deze projectlocaties is het Zwarte Water, waarvan de nevengeul Genne Overwater één van de deelprojecten is. Binnen het plangebied zal een nevengeul worden gegraven en zal tussen de nevengeul en de hoofdgeul een ooibos worden aangeplant. Ten westen van de nevengeul wordt een moerassige zone dieper uitgegraven (slenk). Vooronderzoek heeft aangetoond dat zich op deze locatie resten van een constructie liggen om het Zwarte Water tijdelijk te kunnen afdammen als onderdeel van de IJssellinie. De constructie is eind 19e eeuw gesloopt en in 1913 zouden de laatste restanten zijn opgeruimd. Daarnaast worden er resten van scheepswrakken en andere water gerelateerde vondsten zoals ankers, visgerei, houten constructies, zoals beschoeiing en palen, verwacht. De voorgenomen ontwikkelingsplannen zouden deze resten vernietigen of ernstig beschadigen.&lt;/p&gt;
DOI: 10.13140/rg.2.2.33399.89769
title: Bollettino sismico Regione Umbria 2021 per Google Earth
DOI: 10.15468/dl.h98rb9
title: Occurrence Download

description: A dataset containing 137672 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Myocastor coypus)",
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Specimen, Unknown evidence, Machine Observation, Occurrence evidence)",
 "Year is greater than or equal to 1971",
 "Year is less than or equal to 2024",
 "HasCoordinate is true"
 ]
}

 The dataset includes 137672 records from 1817 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007408-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bye6ug
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Fowlea yunnanensis (Anderson, 1879)"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013787-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5xnudt
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Agave tequilana F.A.C.Weber",
 "Year 2000-2025"
 ]
}

 The dataset includes 90 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016013-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15579244
title: DIFFERENT WAYS TO SOLVE SOME LOGIC PROBLEMS
DOI: 10.5281/zenodo.15579245
title: DIFFERENT WAYS TO SOLVE SOME LOGIC PROBLEMS
DOI: 10.15468/dl.fvjdrv
title: Occurrence Download

description: A dataset containing 692710 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-05-08",
 "EventDate is less than or equal to 2025-06-07",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 692710 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016000-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.hc257
title: Data from: Sea level, topography, and island diversity: phylogeography of the Puerto Rican Red-eyed Coquí, Eleutherodactylus antillensis

description: Quaternary climatic oscillations caused changes in sea level that altered
 the size, number, and degree of isolation of islands, particularly in
 land-bridge archipelagoes. Elucidating the demographic effects of these
 oscillations increases our understanding of the role of climate change in
 shaping evolutionary processes in archipelagoes. The Puerto Rican Bank
 (Puerto Rico and the Eastern Islands, which comprise Vieques, Culebra, the
 Virgin Islands, and associated islets) in the eastern Caribbean Sea
 periodically coalesced during glaciations and fragmented during
 interglacial periods of the Quaternary. To explore population-level
 consequences of sea level changes, we studied the phylogeography of the
 frog Eleutherodactylus antillensis across the archipelago. We tested
 hypotheses encompassing vicariance and dispersal narratives by sequencing
 mtDNA (ca. 552 bp) of 285 individuals from 58 localities, and four nuDNA
 introns (totaling ca. 1,633 bp) from 173 of these individuals. We found
 low support for a hypothesis of divergence of the Eastern Islands
 populations prior to the start of the penultimate interglacial ca. 250
 kya, and higher support for a hypothesis of colonization of the Eastern
 Islands from sources in eastern Puerto Rico during the penultimate and
 last glacial period, when a land-bridge united the Puerto Rican Bank. The
 Río Grande de Loíza Basin in eastern Puerto Rico delineates a
 phylogeographic break. Haplotypes shared between the Puerto Rican Bank and
 St. Croix (an island ca. 105 km southeast of this archipelago) likely
 represent human-mediated introductions. Our findings illustrate how
 varying degrees of connectivity and isolation influence the evolution of
 tropical island organisms.
description: Eleutherodactylus
 antillensis beta-crystallin intron 1 (CRYBA) alignmentE_antillensis_beta_crystallin.nexEleutherodactylus antillensis mtDNA control region (CR) alignmentE_antillensis_control_region.nexEleutherodactylus antillensis myosin heavy chain intron (MYH) alignmentE_antillensis_myosin_heavy_chain.nexEleutherodactylus antillensis rhodopsin intron 1 (RH1) alignmentE_antillensis_rhodopsin.nexEleutherodactylus antillensis ribosomal RPL 9 intron 4 (RPL9int4) alignmentE_antillensis_ribosomal_protein_L9int4.nexEleutherodactylus antillensis beta-crystallin intron 1 (CRYBA) alignment + 2 outgroupsE_antillensis_beta_crystallin_2outs.nexEleutherodactylus antillensis mtDNA control region (CR) alignment + 2 outgroupsE_antillensis_control_region_2outs.nexEleutherodactylus antillensis myosin heavy chain intron (MYH) alignment + 2 outgroupsE_antillensis_myosin_heavy_chain_2outs.nexEleutherodactylus antillensis rhodopsin intron 1 (RH1) alignment + 2 outgroupsE_antillensis_rhodopsin_2outs.nexEleutherodactylus antillensis ribosomal RPL 9 intron 4 (RPL9int4) alignment + 2 outgroupsE_antillensis_rpl9int4_2outs.nex
DOI: 10.5061/dryad.121tq
title: Data from: Crossing the uncrossable: novel trans-valley biogeographic patterns revealed in the genetic history of low dispersal mygalomorph spiders (Antrodiaetidae, Antrodiaetus) from California

description: Antrodiaetus riversi is a dispersal-limited, habitat specialized
 mygalomorph spider species endemic to mesic woodlands of northern and
 central California. Here we build upon prior phylogeographic research
 using a much larger geographic sample and include additional nuclear
 genes, providing more detailed biogeographic insights throughout the range
 of this complex. Of particular interest is the uncovering of unexpected
 and replicated trans-valley biogeographic patterns, where in two separate
 genetic clades western haplotypes in the California south Coast Ranges are
 phylogenetically closely-related to eastern haplotypes from central and
 northern Sierran foothills. In both instances, these trans-valley
 phylogenetic patterns are strongly supported by multiple genes. These
 western and eastern populations are currently separated by the Central
 Valley, a well-recognized modern-day and historical biogeographic barrier
 in California. For one clade the directionality is clearly northeast to
 southwest, and all available evidence is consistent with a jump dispersal
 event estimated at 1.2-1.3 million years ago. During this time period,
 paleogeographic data indicate that northern Sierran rivers emptied to the
 ocean in the south Coast Ranges, rather than at the San Francisco Bay. For
 the other trans-valley clade genetic evidence is less conclusive regarding
 the mechanism and directionality of biogeographic exchange, although the
 estimated timeframe is similar (approximately 1.8 Ma). Despite the large
 number of biogeographic studies previously conducted in central
 California, to the best of our knowledge no prior studies have discussed
 or revealed a northern Sierran to south Coast Range biogeographic
 connection. This uniqueness may reflect the low-dispersal biology of
 mygalomorph spiders, where “post-event” gene exchange rarely erases
 historical biogeographic signal.
description: Atypoides.kmzGoogle Earth kmz file with collection site location informationAtypoidesBirthDeathIncomTPBEAST XML file, Birth-death incomplete tree priorAtypoidesBirthDeathTPBEAST XML file, Birth-death tree priorAtypoidesYuleTPBEAST XML file, Yule tree priorAtypoidesCoalConstantTPBEAST XML file, coalescent constant tree prior
DOI: 10.6084/m9.figshare.11734374
title: Functional and taxonomic diversity of grasshoppers differentially shape above- and belowground communities and their function

description: These data are the raw files for the paper "Functional and taxonomic diversity of grasshoppers differentially shape above- and belowground communities and their function"
DOI: 10.6084/m9.figshare.11734374.v3
title: Functional and taxonomic diversity of grasshoppers differentially shape above- and belowground communities and their function

description: These data are the raw files for the paper "Functional and taxonomic diversity of grasshoppers differentially shape above- and belowground communities and their function"
DOI: 10.6084/m9.figshare.11734374.v4
title: Functional and taxonomic diversity of grasshoppers differentially shape above- and belowground communities and their function

description: These data are the raw files for the paper "Functional and taxonomic diversity of grasshoppers differentially shape above- and belowground communities and their function"
DOI: 10.5061/dryad.3g140
title: Data from: Outlier loci highlight the direction of introgression in oaks

description: Loci considered to be under selection are generally avoided in attempts to
 infer past demographic processes as they do not fit neutral model
 assumptions. However, opportunities to better reconstruct some aspects of
 past demography might thus be missed. Here we examined genetic
 differentiation between two sympatric European oak species with
 contrasting ecological dynamics (Quercus robur and Q. petraea) with both
 outlier (i.e. loci possibly affected by divergent selection between
 species or by hitchhiking effects with genomic regions under selection)
 and non-outlier loci. We sampled 855 individuals in six mixed forests in
 France and genotyped them with a set of 262 SNPs enriched with markers
 showing high interspecific differentiation, resulting in accurate species
 delimitation. We identified between 13 and 74 interspecific outlier loci,
 depending on the coalescent simulation models and parameters used. Greater
 genetic diversity was predicted in Q. petraea (a late successional
 species) than in Q. robur (an early successional species) as introgression
 should theoretically occur predominantly from the resident species to the
 invading species. Remarkably, this prediction was verified with outlier
 loci but not with non-outlier loci. We suggest that the lower effective
 interspecific gene flow at loci showing high interspecific divergence has
 better preserved the signal of past asymmetric introgression towards Q.
 petraea caused by the species’ contrasting dynamics. Using markers under
 selection to reconstruct past demographic processes could therefore have
 broader potential than generally recognized.
description: Complete genotypes (826
 samples and 262SNPs - Genalex format)210912_Genalex_826ind_262SNPs_for_Dryad.xlsx
DOI: 10.5061/dryad.8f191
title: Data from: Genome-wide association and regional heritability mapping to identify loci underlying variation in nematode resistance and body weight in Scottish Blackface lambs

description: The genetic architecture underlying nematode resistance and body weight in
 Blackface lambs was evaluated comparing genome-wide association (GWA) and
 regional heritability mapping (RHM) approaches. The traits analysed were
 faecal egg count (FEC) and immunoglobulin A activity against third-stage
 larvae from Teladorsagia circumcincta, as indicators of nematode
 resistance, and body weight in a population of 752 Scottish Blackface
 lambs, genotyped with the 50k single-nucleotide polymorphism (SNP) chip.
 FEC for both Nematodirus and Strongyles nematodes (excluding Nematodirus),
 as well as body weight were collected at approximately 16, 20 and 24 weeks
 of age. In addition, a weighted average animal effect was estimated for
 both FEC and body weight traits. After quality control, 44 388 SNPs were
 available for the GWA analysis and 42 841 for the RHM, which utilises only
 mapped SNPs. The same fixed effects were used in both analyses: sex, year,
 management group, litter size and age of dam, with day of birth as
 covariate. Some genomic regions of interest for both nematode resistance
 and body weight traits were identified, using both GWA and RHM approaches.
 For both methods, strong evidence for association was found on chromosome
 14 for Nematodirus average animal effect, chromosome 6 for Strongyles FEC
 at 16 weeks and chromosome 6 for body weight at 16 weeks. Across the
 entire data set, RHM identified more regions reaching the suggestive level
 than GWA, suggesting that RHM is capable of capturing some of the
 variation not detected by GWA analyses.
description: Genotypes, pedigree and
 phenotype files for Scottish Blackface populationSNP, nematode and body
 weight dataFile_uploaded_Heredity.7z
DOI: 10.5061/dryad.61cj4
title: Data from: Multifractal growth in periphyton communities

description: Periphyton is an aquatic community composed by algae, bacteria, fungi, and
 other microorganisms that can develop a complex architecture comparable to
 tropical forests. We analyzed the spatial pattern of a periphyton
 community along a succession developed in experimental tanks. Our aim was
 to identify regularities that may help us to explain the patchiness of
 this community. Therefore, we estimated the spatial pattern of periphyton
 biomass using a non-destructive image analysis technique to obtain a
 temporal series of the spatial distribution. These were analyzed using
 multifractal techniques. Multifractals are analogous to fractals but they
 look at the geometry of quantities instead of the geometry of pattern. To
 use these techniques the object of study must show scale invariance and
 then can be characterized by a spectra of fractal dimensions.
 Self-organization describes the evolution of complex structures that
 emerge spontaneously driven internally by variations of the system itself.
 The spatial distribution of biomass showed scale invariance at all stages
 of succession and as the periphyton developed in a homogeneous landscape,
 in a demonstration of self-organized behavior. Self-organization to a
 critical state (SOC) is presented in the complex systems literature as a
 general explanation for scale invariance in nature. SOC requires a
 mechanism where the history of past events in a place influence the actual
 dynamics, this was termed ecological memory. The scale invariance was
 found from the very beginning of the succession thus self-organized
 criticality is a very improbable explanation for the pattern because there
 would be not enough time for the build-up of ecological memory. Positive
 interactions between algae and bacteria, and the existence of different
 spatial scales of colonization and growth are the likely causes of this
 pattern. Our work is a demonstration of how large scale patterns emerge
 from local biotic interactions.
description: Periphyton Spatial
 Biomass distributionTiff Images of biomass
 spatial distribution of periphyton colonization at different times. The
 brigthness of each pixel represent the chlorophyl-a content estimated
 using the method described in: Saravia LA, Giorgi A, Momo FR (1999) A
 photographic method for estimating chlorophyll in periphyton on artificial
 substrata. Aquatic Ecology 33: 325–330. The initial letter of the file
 name correspond to the different tanks used in the experiment, then the
 number of the plate, and finally the date YYMMDD.PeriphytonBio.zipOutput of multifractal analysis software mfSBAThis is the output of multifractal analysis applied to each image The software used mfSBA is available at: . The output are ASCII files pasted in an spreadsheet. The output for each image is labeled as the file name. The columns named R- are the coefficient of determination. The columns named SD are the standard deviations. Tau is the slope of log(Zq) vs log(epsilon) and is used to calculate Dq.mfSBA_Out.ods
DOI: 10.5061/dryad.42577
title: Data from: The sampling and estimation of marine paleodiversity patterns: implications of a Pliocene model

description: Data that accurately capture the spatial structure of biodiversity are
 required for many paleobiological questions, from assessments of changing
 provinciality and the role of geographic ranges in extinction and
 originations, to estimates of global taxonomic or morphological diversity
 through time. Studies of temporal changes in diversity and global
 biogeographic patterns have attempted to overcome fossil sampling biases
 through sampling standardization protocols, but such approaches must
 ultimately be limited by available literature and museum collections. One
 approach to evaluating such limits is to compare results from the fossil
 record with models of past diversity patterns informed by modern
 relationships between diversity and climatic factors. Here we use
 present-day patterns for marine bivalves, combined with data on the
 geologic ages and distributions of extant taxa, to develop a model for
 Pliocene diversity patterns, which is then compared with diversity
 patterns retrieved from the literature as compiled by the Paleobiology
 Database (PaleoDB). The published Pliocene bivalve data (PaleoDB) lack the
 first-order spatial structure required to generate the modern biogeography
 within the time available (&lt;3 Myr). Instead, the published data
 (raw and standardized) show global diversity maxima in the Tropical West
 Atlantic, followed closely by a peak in the cool-temperate East Atlantic.
 Either today's tropical West Pacific diversity peak, double that of
 any other tropical region, is a purely Pleistocene phenomenon—highly
 unlikely given the geologic ages of extant genera and the topology of
 molecular phylogenies—or the paleontological literature is such a
 distorted sample of tropical Pliocene diversity that current sampling
 standardization methods cannot compensate for existing biases. A rigorous
 understanding of large-scale spatial and temporal diversity patterns will
 require new approaches that can compensate for such strong bias,
 presumably by drawing more fully on our understanding of the factors that
 underlie the deployment of diversity today.
description: ValentineEtAl-PaleoDB
 downloadPliocene bivalve data
 downloaded from Paleobiology Database 4 September 2011 (Valentine et al.
 Fig. 5)ValentineEtAl-dryad.xls