cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/szdm7vxbp2.2
title: Droplet-based pico-reactors for high-throughput phenotyping and selection of biofilm-producing bacteria

description: Biofilm formation is a natural strategy for many bacteria to survive in extreme environments. It is a protective layer consisting of extracellular DNA (eDNA), proteins, and polysaccharides, making them inaccessible to antibiotics or biocides. In recent years, microfluidic flow systems for biofilm studies have provided more precise environment control. However, the primary method for quantitative biofilm analysis relies heavily on microscopy, resulting in a low-throughput quantitative measurement with a limited image-scanning area. Not to mention, it is also a time-consuming process. Although the current advances allowed biofilm to be analysed at a higher level of detail by new and better hardware, the physical dissection and isolation of single cells and matrix components from living biofilms remain unsolved and unsatisfactory. Flow cytometry is an ideal method allowing a high-throughput quantitative analysis. Therefore, scientists propose to analyse biofilm formed in a microfluidic device, achieving both high-throughput analyses with precise biofilm formation control and high-throughput by integrating microfludics and flow cytometry. However, the reality is that flow cytometry is an end-point destructive measurement. The sample needs to be transferred from a microfluidic channel to a suspension for flow cytometry. Also, the biofilm is a complex matrix comprised of extracellular polymeric substances (EPS), making it impossible to be detected using the flow cytometry approach. Thus, we proposed a novel method that achieved a high-precise control of the environment for biofilm formation and a high-throughput quantitative analysis by integrating the microfluidic-droplet method and flow cytometry with fluorescence-activated cell sorting. We used Acinetobacter baumannii (A. baumannii) as our biological example as it is well-known organism to use biofilm production as a virulence factor. In this study, we successfully isolated A. baumannii based on their biofilm productivity. In addition, the isolates were recovered and vaible for future culture. We found that the biofilm phenotypes persisted after the cycle of isolation and recovery. This is to our best knowledge the first time that the use of microfluidic-droplet integrated with flow cytometry in biofilm study. We believe this method would provide new opportunities to link the biofilm phenotype to genotype, deepening the future biofilm studies.
DOI: 10.17632/d24yyp96dc.2
title: Quantity of Questing Blacklegged Ticks and Micro-scale Environmental Factors in Four Suburban Parks near New York City

description: During 2017 and 2018, we collected the quantity of questing blacklegged ticks (Ixodes scapularis), also known as deer ticks, in 128 sampling sites of 5m by 5m in four state parks—Caumsett State Park, Connetquot River State Park, Rockefeller Park Preserve, and Fire Island National Seashore—around New York City. The blacklegged tick is the primary vector for the spirochete Borrelia burgdorferi, the pathogen of Lyme disease, in Northeastern United States. Using the flagging method, we collected and counted the numbers of adult and nymphal blacklegged ticks at each stie. Along with these quantities, we also recorded the geographic coordinates, ambient temperature, and relative humidity at the sampling sites. Using high-resolution aerial imagery and LiDAR data, we further derived land cover composition, ecotone boundary length, normalized difference vegetation index (NDVI), elevation, solar radiation, and other environmental factors. The data could be used to conduct longitudinal analysis at the same sampling sites as well as comparison with other sites. Ecologists and environmental scientists can use the data for spatiotemporal and statistical analyses of tick ecology at the local scale.
DOI: 10.17632/yvy8r3x23s.1
title: Mineral and petrofabric data of Neoproterozoic Tanzanian tectonites

description: The dataset includes mineral chemistry and crystallographic axis orientations for various minerals from selected metamorphic rock samples collected in the Gol Mountains of Northern Tanzania.
Electron-microprobe data (Excel spreadsheet) include mineral structural formulae calculation by charge balance criteria following various procedures suggested in the bibliography (Spear, 1995) for different phases. Electron back-scattered diffraction (EBSD) mineral petrofabric data are the direct output of the automated Electron Back-Scattered Diffraction system from the University of the Basque Country (Channel5, HKL), and can be processed with MTex software and Matlab (Bachmann et al., 2010).
Bachmann, F., Hielscher, R., Schaeben, H., 2010. Texture Analysis with MTEX – Free and Open Source Software Toolbox. Solid State Phenomena 160, 63–68. https://doi.org/10.4028/www.scientific.net/SSP.160.63
Spear, F.S., 1995. Metamorphic Phase equilibria and pressure-temperature-time paths. Mineralogical Society of America, Monograph (second printing). Washington, D.C., 799 p
DOI: 10.17632/v52t9vy3ty.1
title: PSYCHOSOCIAL SUPPORT FOR TRANSFORMATION OF SERVICE QUALITY THROUGH COMMUNITY SATISFACTION: A SYSTEMATIC LITERATURE MAPPING REVIEW

description: The data in this research is secondary data (Scopus bibliometrics), which was obtained by searching through the Scopus database (https://www.scopus.com) in January 2024.
The selection of documents is carried out by entering the main keywords to search for the phrase "psychosocial support" in the "Document search" search field. Then the data was obtained by exporting bibliographic information into RIS and CSV file formats, as well as inputting it into the Mendeley Reference Manager feature and processing the data using Microsoft Excel tools.
DOI: 10.17632/v52t9vy3ty.2
title: PSYCHOSOCIAL SUPPORT FOR TRANSFORMATION OF SERVICE QUALITY THROUGH COMMUNITY SATISFACTION: A SYSTEMATIC LITERATURE MAPPING REVIEW

description: The data in this research is secondary data (Scopus bibliometrics), which was obtained by searching through the Scopus database (https://www.scopus.com) in January 2024.
The selection of documents is carried out by entering the main keywords to search for the phrase "psychosocial support" in the "Document search" search field. Then the data was obtained by exporting bibliographic information into RIS and CSV file formats, as well as inputting it into the Mendeley Reference Manager feature and processing the data using Microsoft Excel tools.
DOI: 10.17632/2dfyh84pdf.1
title: CoCG Road Condition - Oriented Bounding Boxes (CoCGRCOBB)

description: CoCG Road Condition - Oriented Bounding Boxes (CoCGRCOBB) is an extension of the Camera on Car Grille Road Condition - Detection Dataset (CoCGRCDD) using Oriented Bounding Boxes annotation. Research conducted on the CoCGRCDD dataset showed that the object detection models tested did not generalize transverse and longitudinal cracks between each other very well, and it was therefore decided to use Oriented Bounding Boxes to combine the two classes C01 and C02 into a single class C12.

This data set contains frames from video recordings of road pavements in Poland. The data was obtained from a USB Logitech Brio camera placed on the radiator grille of the car. The annotation process was carried out using CVAT software. Annotations in the form of classes and oriented bounding boxes was saved in MS COCO format (OBB_annotations.json). The dataset contains the following types of road pavement defects:
• C12 - single crack and pronounced discontinuity of the material structure in any orientation;
• C03 - Alligator cracks and delamination of the surface layer occurring in their area;
• C04 - holes on the road surface and larger cavities erosion (such as in the area of cracks).

The set consists of 2110 frames from the footage, of which 325 have no road surface defects, which allows us to check the occurrence of the model's prediction quality based on the occurrence of false positives.
Each frame in the dataset is additionally annotated (annotations/additional_info.json) with the occurrence of: shadow, painting, outlandish (object that should not be on the road e.g. sand, leaves, etc.), path milling, grain or binder defects, manhole.

* The dataset presented here contains only annotations for images that are included in the CoCG Road Condition - Detection Dataset (CoCGRCDD) - https://data.mendeley.com/datasets/snyyfknw56/1.
DOI: 10.17632/zk4wkcgphx.1
title: Diet-related mHealth Apps Content Analysis

description: This quantitative content analysis study evaluated the content, features, and quality of commercial diet apps in Asian marketplaces. Inclusion criteria encompassed both free and paid English-language apps for general dietary information. Apps that were disease-specific or redundant were excluded. App descriptions were extracted and evaluated by two independent research dietitians using a 100-point rubric based on predefined variables (e.g., language options, credibility, food databases, valuable features, health-behavior theory and technical quality). Good inter-rater reliability was achieved (kappa = 0.726; intraclass correlation coefficient = 0.763).
DOI: 10.17632/y77m2ynss6
title: Dataset for "Uncovering Phosphorus Dynamics in Soil Amended with pH-modified Pig Slurry: A Rhizobox Study Using 33P Isotopes"

description: The data collected and analysed during the experimental phase of the study are presented in this repository. The present study aimed to assess the P dynamics in the soil-plant system after surface application of pig slurry treated with different products to modify its pH value.
The excel spreadsheet is accompanied by a reader sheet which describes the treatments and the abbreviations of the parameters under study. Wherever needed, calculation and/or transformations took place as described in the manuscript.
DOI: 10.17632/y77m2ynss6.1
title: Dataset for "Uncovering Phosphorus Dynamics in Soil Amended with pH-modified Pig Slurry: A Rhizobox Study Using 33P Isotopes"

description: The data collected and analysed during the experimental phase of the study are presented in this repository. The present study aimed to assess the P dynamics in the soil-plant system after surface application of pig slurry treated with different products to modify its pH value.
The excel spreadsheet is accompanied by a reader sheet which describes the treatments and the abbreviations of the parameters under study. Wherever needed, calculation and/or transformations took place as described in the manuscript.
DOI: 10.17632/7pym2dzy7f.1
title: Infrared spectra of particles were obtained from marine sediment samples in February 2024 using Lumos spectrometer

description: 47 Infrared spectra of particles were obtained from marine sediment samples in February 2024 using Lumos spectrometer
DOI: 10.17632/d9mbg2z4t2
title: MLFWATER/vp

description: Visual Paths explainable ML algorithm data and source code.
DOI: 10.17632/d9mbg2z4t2.1
title: MLFWATER/vp

description: Visual Paths explainable ML algorithm data and source code.
DOI: 10.17632/3n74zj2vzm.2
title: Identification of the viral and cellular microRNA interactomes during SARS-CoV-2 infection. Fossat et al

description: Supplemental Tables S1, S2, S3, S4, S5, S6, S7, S8 & S10
DOI: 10.17632/vfwzsw72pc.1
title: Supplemental material from article: "Lab-grown, 3D Extracellular Matrix Particles Improve Cardiac Function and Morphology in Myocardial Ischemia"

description: Provided here is the supplemental material accompanying the paper: "Lab-grown, 3D Extracellular Matrix Particles Improve Cardiac Function and Morphology in Myocardial Ischemia", published in the American Journal of Physiology-Heart and Circulatory Physiology
DOI: 10.17632/spvkhghxzm.2
title: Structurally Well-defined Functionalized Polyolefins and Graft Copolymers Thereof as Bitumen Modifiers - Supplementary Information

description: Supplementary data for the article Structurally Well-defined Functionalized Polyolefins and Graft Copolymers Thereof as Bitumen Modifiers.
The presented datasets comprise complete synthesis procedures and the characterization techniques of the materials disclosed in the original manuscript viz. HT-SEC, DSC, 1H NMR, DSR, FM, AFM, and standard bitumen tests.
DOI: 10.17632/spvkhghxzm.3
title: Structurally Well-defined Functionalized Polyolefins and Graft Copolymers Thereof as Bitumen Modifiers - Supplementary Information

description: Supplementary data for the article Structurally Well-defined Functionalized Polyolefins and Graft Copolymers Thereof as Bitumen Modifiers.
The presented datasets comprise complete synthesis procedures and the characterization techniques of the materials disclosed in the original manuscript viz. HT-SEC, DSC, 1H NMR, DSR, FM, AFM, and standard bitumen tests.
DOI: 10.17632/spvkhghxzm.1
title: Structurally Well-defined Functionalized Polyolefins and Graft Copolymers Thereof as Bitumen Modifiers - Supplementary information

description: Supplementary data for the article Structurally Well-defined Functionalized Polyolefins and Graft Copolymers Thereof as Bitumen Modifiers.
The presented datasets comprise complete synthesis procedures and the characterization techniques of the materials disclosed in the original manuscript viz. HT-SEC, DSC, 1H NMR, DSR, FM, AFM, and standard bitumen tests.
DOI: 10.15468/dl.3eum7s
title: Occurrence Download

description: A dataset containing 33703 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Sula nebouxii Milne-Edwards, 1882"
 ]
}

 The dataset includes 33703 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004416-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/wns2gbpwkk.1
title: Impact of sleep deprivation on monocyte subclasses and function

description: This repository contains data and supporting materials for the manuscript titled "Impact of Sleep Deprivation on Monocyte Subclasses and Function in Obese Individuals." This cross-sectional study investigates the relationship between sleep efficiency, obesity, and systemic inflammation, focusing on the role of monocyte subclasses.
DOI: 10.17632/dhhd2hnynf.1
title: LINF_020007700

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/vfh6kvg38r.1
title: LINF_020007500

description: Glycosyltransferase (GlcNAc); Leishmania infantum (strain JPCM5)
DOI: 10.17632/3d29y5jgh5.1
title: Data extraction for Highly diverse flower strips promote natural enemies more in annual field crops: A review and meta-analysis.

description: This is the data used for the article Highly diverse flower strips promote natural enemies more in annual field crops: A review and meta-analysis. The aim of the study was to synthesize the knowledge about the effect of flower strips on pests and natural enemies in annual crops. 
The data consists of three files
- Data for manuscript 1 - Natural enemies - list of data points extracted from 23 articles on the effect of flower strips on natural enemies. Each row corresponds to one pair of means (flower strip and control) extracted from the article. The data extracted includes mean natural enemy densities, standard deviations, number of samples as well as study 
- Data for manuscript 2 - Pests - list of data points extracted from 13 articles on the effect of flower strips on natural enemies. Each row corresponds to one pair of means (flower strip and control) extracted from the article. The data extracted includes mean pest densities or damage, standard deviations, number of samples as well as study details such as the type of pest/assesment and number of flowering species
- References for the 26 articles extracted for the study
DOI: 10.17632/nmjzz42crx.1
title: LINF_020008400

description: UDP-N-acetylglucosamine transporter; Leishmania infantum (strain JPCM5)
DOI: 10.17632/d9m2phwb93.1
title: LINF_020008500

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/kkyxrp4yxh.1
title: TLR4-dependent innate immune responses are mediated by intracrine corticosteroids and activation of GSK-3β in astrocytes

description: Reactive astrocytes are important pathophysiologically and synthesise neurosteroids. We observed that LPS increased immunoreactive TLR4 and key steroidogenic enzymes in cortical astrocytes of rats and investigated whether corticosteroids are produced and mediate astrocytic TLR4-dependent innate immune responses.
DOI: 10.17632/nr9f4rw8r7.1
title: LINF_360036300

description: Flagellar Member 2 | FLAM2
Leishmania infantum (strain JPCM5)
DOI: 10.17632/wvkn5s479j.1
title: eLife difficulty data (2023)

description: Data and analysis scripts for "Judging the difficulty of perceptual decisions" by Anne Löffler, Ariel Zylberberg, Michael Shadlen & Daniel Wolpert published in eLife 2023
DOI: 10.17632/xn63xpnkbx.1
title: Characterisation data for sediments collected from Peel Place Quarry, Cumbia, UK – A Sellafield nuclear site analogue

description: We present characterisation data for sediments consistent with the quaternary lithography located beneath the Sellafield nuclear site, UK. Geologically contiguous samples were collected, stored under ambient conditions and analysed. Analysis data described here include particle size distribution and textural classification, pH measurements for soil acidity, water and organic carbon content (loss on ignition), BET surface area, bioavailability of iron, cation exchange capacity for ion exchange capability, permeability measurements, gamma spectroscopy for radiological characterisation, X-ray analysis for phase (X-ray diffraction, XRD) and element (X-ray fluorescence, XRF) identification, ion chromatography for leachable ion concentrations, thin sectioning and optical and scanning electron microscopy (SEM) coupled with energy-dispersive X-ray spectroscopy (EDX) for particle visualisation, and 16S ribosomal RNA (rRNA) for biogeochemical characterisation. We expect these data to be useful to site remediators, scientists and those examining biogeochemical and/or physical sediment processes at nuclear sites as well as site remediation efforts in the wider community.
DOI: 10.17632/8vb23c48ph.1
title: Hetero-oligomers in solution and binding to the raft membrane

description: Disruptions of cell membranes by tau and amylin oligomers are linked to Amyloid diseases. Recent studies suggest that misfolded tau and amylin can form neurotoxic hetero-oligomers that are structurally different from the homo-oligomers. We have simulated the creation of hetero-dimer (Video S1) and -tetramer (Video S2) in solution via a self-aggregation process by coarse-grained MD simulations. In addition, the binding of the hetero-dimer to the phase-separated raft membrane in lateral (Video S3) and transverse (Video S4) are shown. Our results provide new molecular insights into understanding the membrane damage mechanisms of hetero-oligomer associated with the cross-talk between amyloid diseases.
DOI: 10.17632/wddt4gbttd.1
title: CRACK500 with noisy annotation masks

description: This is the repository to host the dataset to train noisy labelled crack segmentation algorithm proposed by Zhang, et al. (upcoming) in the article "SelectSeg: Uncertainty-based selective training and prediction for accurate crack segmentation under limited data and noisy annotations". 

In the zip folder, you can find "train_crop_mask_(10,20,50,100)pct", corresponding to the case where 10%, 20%, 50%, and 100% masks have been replaced by their noisy version. 

For other files, including training images, and validation/test dataset, we refer the interested readers to https://github.com/fyangneil/pavement-crack-detection for the original development.
DOI: 10.17632/wkzc5xmp6m.1
title: Supplemental materials for Merola et al. JAAD Structural Damage Review

description: Supplemental examples of x-ray, ultrasound, and MRI images and scoring methods supporting the manuscript, "A Clinical Review of Structural Damage in Psoriatic Arthritis for Dermatologists: From Pathogenesis to Ongoing Controversies," by Merola et al, published in the Journal of the American Academy of Dermatology.
DOI: 10.17632/j69n2w5zbb.1
title: Survey Dataset

description: The original data of survey dataset on rational and emotional content, E-WOM, and customer engagament among Facebook users.
DOI: 10.17632/j69n2w5zbb.2
title: Survey Dataset

description: The original data of survey dataset on rational and emotional content, E-WOM, and customer engagament among Facebook users.
DOI: 10.17632/s2yxc2rsdn.1
title: LINF_360037800

description: Bromodomain factor 2 | BDF2
Leishmania infantum (strain JPCM5)
DOI: 10.17632/s34pwpv4dr.1
title: Control of Droplet Impact through Magnetic Actuation of Surface Microstructures

description: An effective method for on-demand control over the impact dynamics of droplets on a magnetoresponsive surface is reported. The surface is comprised of micrometer-sized lamellas from a magnetoactive elastomer on a copper substrate. The surface itself is fabricated using laser micromachining. The orientation of the lamellae is switched from edge-on (orthogonal to the surface) to face-on (parallel to the surface) by changing the direction of a moderate (&lt; 250 mT) magnetic field. This simple actuation technique can significantly change the critical velocities of droplet rebound, deposition, and splashing. Rebound and deposition regimes can be switched up to Weber number We &lt; 13±3, while deposition and splashing can be switched in the range of 32 &lt; We &lt; 52. Because a permanent magnet is used, no permanent power supply is required for maintaining the particular regime of droplet impact. The presented technology is highly flexible and enables selective fabrication and actuation of microstructures on complex devices. It has great potential for applications in soft robotics, microfluidics, and advanced thermal management. 

The following video files show typical water droplet impacts on different surfaces:
• Droplet deposition on flat MAE at We = 10 (flat_We10.avi)
• Droplet deposition on flat MAE at We = 44 (flat_We44.avi)
• Droplet circular splash on flat MAE at We = 100 (flat_We100.avi)
• Droplet deposition on “face on” MAE at We = 10 (side view: face_on_We10(side).avi, front view: face_on_We10(front).avi)
• Droplet deposition on “face on” MAE at We = 44 (side view: face_on_We44(side).avi, front view: face_on_We44(front).avi)
• Droplet parallel splash on “face on” MAE at We = 76 (side view: face_on_We76(side).avi, front view: face_on_We76(front).avi)
• Droplet circular splash on “face on” MAE at We = 100 (side view: face_on_We100(side).avi, front view: face_on_We100(front).avi)
• Droplet rebound on “edge on” MAE at We = 10 (side view: edge_on_We10(side).avi, front view: edge_on_We10(front).avi)
• Droplet penetration on “edge on” MAE at We = 17 (side view: edge_on_We17(side).avi, front view: edge_on_We17(front).avi)
• Droplet parallel splash on “edge on” MAE at We = 44 (side view: edge_on_We44(side).avi, front view: edge_on_We44(front).avi)
• Droplet circular splash on “edge on” MAE at We = 172 (side view: edge_on_We172(side).avi, front view: edge_on_We172(front).avi)
DOI: 10.17632/82zj46jr97.1
title: Bocarsly et al_Preexisting risk-avoidance is driven by striatal dopamine receptor imbalance, enhancing alcohol relief and punishment-insensitive drinking

description: This the dataset for the manuscript by Bocarsly et al. entited "Preexisting risk-avoidance is driven by striatal dopamine receptor imbalance, enhancing alcohol relief and punishment-insensitive drinking"
DOI: 10.17632/nmn7jb98y8.1
title: Mg-Gd-Sr Thermodynamic Database

description: The thermodynamic calculations with the database enables a well reproduction of experimental findings and a physical-metallurgical understanding of the microstructure formation in solidification and annealing. It is helpful in designing chemical compositions and microstructure of novel Mg-Sr alloy for biomedical applications.