cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14091432.v1
title: Additional file 4 of Identification and functional analysis of the SARS-COV-2 nucleocapsid protein

description: Additional file 4: Supplementary file 1. The sequence data of Mass Spectrometry Analysis.
DOI: 10.6084/m9.figshare.14091454.v1
title: Additional file 4 of The ‘Tommy Atkins’ mango genome reveals candidate genes for fruit quality

description: Additional file 4: Supplemental Table S9, S10. Orthofinder reports
DOI: 10.6084/m9.figshare.14091454
title: Additional file 4 of The ‘Tommy Atkins’ mango genome reveals candidate genes for fruit quality

description: Additional file 4: Supplemental Table S9, S10. Orthofinder reports
DOI: 10.6084/m9.figshare.14091576
title: Additional file 4 of Comparison of risk allele frequencies of single nucleotide polymorphisms associated with age-related macular degeneration in different ethnic groups

description: Additional file 4 Supplemental Table 1 Effect allele frequencies (EAFs) of any age-related macular degeneration related single nucleotide polymorphisms in continental groups, including Koreans.
DOI: 10.6084/m9.figshare.14091579
title: Additional file 5 of Comparison of risk allele frequencies of single nucleotide polymorphisms associated with age-related macular degeneration in different ethnic groups

description: Additional file 5 Supplemental Table 2 Effect allele frequencies (EAFs) of any age-related macular degeneration-related single nucleotide polymorphisms in East Asian groups, including Koreans.
DOI: 10.6084/m9.figshare.14091579.v1
title: Additional file 5 of Comparison of risk allele frequencies of single nucleotide polymorphisms associated with age-related macular degeneration in different ethnic groups

description: Additional file 5 Supplemental Table 2 Effect allele frequencies (EAFs) of any age-related macular degeneration-related single nucleotide polymorphisms in East Asian groups, including Koreans.
DOI: 10.6084/m9.figshare.14091576.v1
title: Additional file 4 of Comparison of risk allele frequencies of single nucleotide polymorphisms associated with age-related macular degeneration in different ethnic groups

description: Additional file 4 Supplemental Table 1 Effect allele frequencies (EAFs) of any age-related macular degeneration related single nucleotide polymorphisms in continental groups, including Koreans.
DOI: 10.6084/m9.figshare.14091583
title: Additional file 2 of Mapping the role of digital health technologies in the case detection, management, and treatment outcomes of neglected tropical diseases: a scoping review

description: Additional file 2:. Extracted data.
DOI: 10.6084/m9.figshare.14091583.v1
title: Additional file 2 of Mapping the role of digital health technologies in the case detection, management, and treatment outcomes of neglected tropical diseases: a scoping review

description: Additional file 2:. Extracted data.
DOI: 10.6084/m9.figshare.14091585
title: Additional file 2 of Prevalence of comorbidity in Chinese patients with COVID-19: systematic review and meta-analysis of risk factors

description: Additional file 2. Primary data extracted from included studies and sorted based on different comorbidities, computational process of u-test and the result pages of begg’s test and egger’s test in Stata15.
DOI: 10.6084/m9.figshare.14091585.v1
title: Additional file 2 of Prevalence of comorbidity in Chinese patients with COVID-19: systematic review and meta-analysis of risk factors

description: Additional file 2. Primary data extracted from included studies and sorted based on different comorbidities, computational process of u-test and the result pages of begg’s test and egger’s test in Stata15.
DOI: 10.5517/ccdc.csd.cc26hrgy
title: CCDC 2040930: Experimental Crystal Structure Determination

description: Related Article: Xiaolu Zhou, Songlin Xu, Liqiang Liu, Yiping Sun, Jinxi Cheng, Xingyu Duan, Lishan Zhou, Hongmei Qu|2021|Dyes Pigm.|188|109193|doi:10.1016/j.dyepig.2021.109193
DOI: 10.5517/ccdc.csd.cc26hrhz
title: CCDC 2040931: Experimental Crystal Structure Determination

description: Related Article: Xiaolu Zhou, Songlin Xu, Liqiang Liu, Yiping Sun, Jinxi Cheng, Xingyu Duan, Lishan Zhou, Hongmei Qu|2021|Dyes Pigm.|188|109193|doi:10.1016/j.dyepig.2021.109193
DOI: 10.5517/ccdc.csd.cc2799sn
title: CCDC 2064531: Experimental Crystal Structure Determination

description: Related Article: Mehmet Akkurt|2021|CSD Communication|||
DOI: 10.5281/zenodo.4556414
title: Nanopore Sequencing of partial TiLV segment 1 amplicons

description: Here we provide all the intermediate bioinformatics files (ie. medaka.bam; medaka.bam.stat; medaka.bam.tsv) from two analysis: (1) using a mixture of partial TiLV segment 1 amplicons (620 bp and 274 bp) (referred here as <strong><em>tilseg1_620bp.zip</em></strong>) and (2) using only partial TiLV segment 1 amplicons (274 bp) with random subsamples for 1000, 500, 100, and 50 reads (referred here as <strong><em>tilseg1_274bp.zip</em></strong>). We also provide all final medaka.fasta files of consensus sequences generated through analysis (1) and (2) and the reference fasta sequences (without primer binding sites) used for analysis (1) and (2) referred as MN687685.577.final.fasta and MN687685.231.final.fasta.
DOI: 10.5281/zenodo.4556413
title: Nanopore Sequencing of partial TiLV segment 1 amplicons

description: Here we provide all the intermediate bioinformatics files (ie. medaka.bam; medaka.bam.stat; medaka.bam.tsv) from two analysis: (1) using a mixture of partial TiLV segment 1 amplicons (620 bp and 274 bp) (referred here as <strong><em>tilseg1_620bp.zip</em></strong>) and (2) using only partial TiLV segment 1 amplicons (274 bp) with random subsamples for 1000, 500, 100, and 50 reads (referred here as <strong><em>tilseg1_274bp.zip</em></strong>). We also provide all final medaka.fasta files of consensus sequences generated through analysis (1) and (2) and the reference fasta sequences (without primer binding sites) used for analysis (1) and (2) referred as MN687685.577.final.fasta and MN687685.231.final.fasta.
DOI: 10.6084/m9.figshare.7571813
title: Dataset: Effects of dopamine receptor antagonism and amphetamine-induced psychomotor sensitization on sign- and goal-tracking after extended training

description: Dataset and Med-PC code for a paper describing experiments involving dopamine antagonism using SCH-23390 and eticlopride and amphetamine-induced psychomotor sensitization.
DOI: 10.6084/m9.figshare.7571813.v2
title: Dataset: Effects of dopamine receptor antagonism and amphetamine-induced psychomotor sensitization on sign- and goal-tracking after extended training

description: Dataset and Med-PC code for a paper describing experiments involving dopamine antagonism using SCH-23390 and eticlopride and amphetamine-induced psychomotor sensitization.
DOI: 10.5281/zenodo.4556496
title: Observations_gap_layers_field_records_2012_Antarctic_Zhongshan_Station

description: The regular ice observation was carried out during March to December 2012 every 2~7 days near Chinese Zhongshan Station in Prydz Bay. Snow and ice thickness, freeboard, ice type and characters were recorded at two sea ice observation positions (SIP), with one was first-year ice (SIP-FYI) and another was multi-year ice (SIP-MYI). The summary of gap layer records observed at two sea ice observation position SIP-MYI and SIP-FYI near Zhongshan Station in 2012 was presented here. NA means no available data. MYI and FYI represents multi-year ice and first-year ice, respectively.
DOI: 10.5281/zenodo.4556495
title: Observations_gap_layers_field_records_2012_Antarctic_Zhongshan_Station

description: The regular ice observation was carried out during March to December 2012 every 2~7 days near Chinese Zhongshan Station in Prydz Bay. Snow and ice thickness, freeboard, ice type and characters were recorded at two sea ice observation positions (SIP), with one was first-year ice (SIP-FYI) and another was multi-year ice (SIP-MYI). The summary of gap layer records observed at two sea ice observation position SIP-MYI and SIP-FYI near Zhongshan Station in 2012 was presented here. NA means no available data. MYI and FYI represents multi-year ice and first-year ice, respectively.
DOI: 10.6084/m9.figshare.14094587
title: Sequences of transposase coding regions plus flanking 500bp on both sides of the long MLEs

description: Sequences of transposase coding regions plus flanking 500bp on both sides of the long MLEs. Predicted TIR sequences are shown lower cases.
DOI: 10.6084/m9.figshare.14094979
title: Supplementary Material for: Quantitative Measurement of IgG to Severe Acute Respiratory Syndrome Coronavirus-2 Proteins Using ImmunoCAP

description: <b><i>Background:</i></b> Detailed understanding of the immune response to severe acute respiratory syndrome coronavirus (SARS-CoV)-2, the cause of coronavirus disease 2019 (CO­VID-19) has been hampered by a lack of quantitative antibody assays. <b><i>Objective:</i></b> The objective was to develop a quantitative assay for IgG to SARS-CoV-2 proteins that could be implemented in clinical and research laboratories. <b><i>Methods:</i></b> The biotin-streptavidin technique was used to conjugate SARS-CoV-2 spike receptor-binding domain (RBD) or nucleocapsid protein to the solid phase of the ImmunoCAP. Plasma and serum samples from patients hospitalized with COVID-19 (<i>n</i> = 60) and samples from donors banked before the emergence of COVID-19 (<i>n</i> = 109) were used in the assay. SARS-CoV-2 IgG levels were followed longitudinally in a subset of samples and were related to total IgG and IgG to reference antigens using an ImmunoCAP 250 platform. <b><i>Results:</i></b> At a cutoff of 2.5 μg/mL, the assay demonstrated sensitivity and specificity exceeding 95% for IgG to both SARS-CoV-2 proteins. Among 36 patients evaluated in a post-hospital follow-up clinic, median levels of IgG to spike-RBD and nucleocapsid were 34.7 μg/mL (IQR 18–52) and 24.5 μg/mL (IQR 9–59), respectively. Among 17 patients with longitudinal samples, there was a wide variation in the magnitude of IgG responses, but generally the response to spike-RBD and to nucleocapsid occurred in parallel, with peak levels approaching 100 μg/mL, or 1% of total IgG. <b><i>Conclusions:</i></b> We have described a quantitative assay to measure IgG to SARS-CoV-2 that could be used in clinical and research laboratories and implemented at scale. The assay can easily be adapted to measure IgG to mutated COVID-19 proteins, has good performance characteristics, and has a readout in standardized units.
DOI: 10.6084/m9.figshare.14094587.v1
title: Sequences of transposase coding regions plus flanking 500bp on both sides of the long MLEs

description: Sequences of transposase coding regions plus flanking 500bp on both sides of the long MLEs. Predicted TIR sequences are shown lower cases.
DOI: 10.6084/m9.figshare.14094979.v1
title: Supplementary Material for: Quantitative Measurement of IgG to Severe Acute Respiratory Syndrome Coronavirus-2 Proteins Using ImmunoCAP

description: <b><i>Background:</i></b> Detailed understanding of the immune response to severe acute respiratory syndrome coronavirus (SARS-CoV)-2, the cause of coronavirus disease 2019 (CO­VID-19) has been hampered by a lack of quantitative antibody assays. <b><i>Objective:</i></b> The objective was to develop a quantitative assay for IgG to SARS-CoV-2 proteins that could be implemented in clinical and research laboratories. <b><i>Methods:</i></b> The biotin-streptavidin technique was used to conjugate SARS-CoV-2 spike receptor-binding domain (RBD) or nucleocapsid protein to the solid phase of the ImmunoCAP. Plasma and serum samples from patients hospitalized with COVID-19 (<i>n</i> = 60) and samples from donors banked before the emergence of COVID-19 (<i>n</i> = 109) were used in the assay. SARS-CoV-2 IgG levels were followed longitudinally in a subset of samples and were related to total IgG and IgG to reference antigens using an ImmunoCAP 250 platform. <b><i>Results:</i></b> At a cutoff of 2.5 μg/mL, the assay demonstrated sensitivity and specificity exceeding 95% for IgG to both SARS-CoV-2 proteins. Among 36 patients evaluated in a post-hospital follow-up clinic, median levels of IgG to spike-RBD and nucleocapsid were 34.7 μg/mL (IQR 18–52) and 24.5 μg/mL (IQR 9–59), respectively. Among 17 patients with longitudinal samples, there was a wide variation in the magnitude of IgG responses, but generally the response to spike-RBD and to nucleocapsid occurred in parallel, with peak levels approaching 100 μg/mL, or 1% of total IgG. <b><i>Conclusions:</i></b> We have described a quantitative assay to measure IgG to SARS-CoV-2 that could be used in clinical and research laboratories and implemented at scale. The assay can easily be adapted to measure IgG to mutated COVID-19 proteins, has good performance characteristics, and has a readout in standardized units.
DOI: 10.18112/openneuro.ds003524.v1.0.0
title: FridayNightLights_Study1
DOI: 10.6084/m9.figshare.14060498
title: Job Posting Data

description: The data for the work "Market-oriented Job Skill Valuation with Cooperative Composition Neural Network" in Nature Communications.The formatted job posting data for two types of jobs (i.e., IT and Designer) can be found in "job postings.zip".The processed features and input data for running our models can be found in "processed data.zip"The intermediate data generated during the experiments can be found in "Source Data.zip"<br><br>
DOI: 10.14284/452
title: Primary particle size distribution measured monthly in the Zeeschelde at 16 stations using a Mastersizer2000 instrument

description: Primary particle size distribution measured monthly in the Zeeschelde at 16 stations using a Mastersizer2000 instrument, independently of the tidal phase and spring/neap
description: Within the OMES campaign, we took 1 l samples from a bucket sample conducted at the water surface to estimate primary particle size. Samples were collected once a month at each station. Primary particle size distribution was measured using a Mastersizer2000. The detection range of the Mastersizer2000 is 0.02 µm until 2000 µm. After shaking the 1 l samples intensively, the samples were decanted in the dispersion unit until the obscuration reached a value of approximately 10 %. We used the default absorption and refractive index (i.e., 0.1 and 1.52 respectively) and standard Lorenz-Mie method for spherical particles. The sampled were stirred and pumped with a frequency of 750 rpm and 2000 rpm, respectively, using tab water as a dispersant.
DOI: 10.5281/zenodo.4555977
title: Rootstocks influence the responses of ripening grape berries to leafroll associated viruses

description: Grapevine leafroll-associated virus (GLRaV) infections are accompanied by symptoms with varying severity. Data were collected from Cabernet franc grapevines with zero, one, or pairs of leafroll infection(s) and grafted to different rootstocks. RNA sequencing data were mapped to a high-quality Cabernet franc genome reference, which was sequenced and assembled to carry out this study. This study identified several molecular levers that participate in responses to GLRaVs, including those that are condition dependent. This work was funded by the Pierce’s Disease and Glassy-winged Sharpshooter Research Board of the California Department of Food and Agriculture (project 17-0417-000-SA). DC was partially supported by the Louis P. Martini Endowment in Viticulture.<br> <br> This dataset includes <em>Cabernet Franc genomic sequences:</em><br> Whole genome assembly<br> Primary scaffolds<br> Haplotigs <em>Cabernet Franc feature annotations:</em><br> Gene annotation<br> Repeat annotation<br> <br> <em>Cabernet Franc feature sequences:</em><br> CDS sequences<br> mRNA sequences<br> Protein sequences<br> <br> <em>RNA sequencing experiment data:</em><br> Raw counts per library per gene<br> Sample key
DOI: 10.5281/zenodo.4555976
title: Rootstocks influence the responses of ripening grape berries to leafroll associated viruses

description: Grapevine leafroll-associated virus (GLRaV) infections are accompanied by symptoms with varying severity. Data were collected from Cabernet franc grapevines with zero, one, or pairs of leafroll infection(s) and grafted to different rootstocks. RNA sequencing data were mapped to a high-quality Cabernet franc genome reference, which was sequenced and assembled to carry out this study. This study identified several molecular levers that participate in responses to GLRaVs, including those that are condition dependent. This work was funded by the Pierce’s Disease and Glassy-winged Sharpshooter Research Board of the California Department of Food and Agriculture (project 17-0417-000-SA). DC was partially supported by the Louis P. Martini Endowment in Viticulture.<br> <br> This dataset includes <em>Cabernet Franc genomic sequences:</em><br> Whole genome assembly<br> Primary scaffolds<br> Haplotigs <em>Cabernet Franc feature annotations:</em><br> Gene annotation<br> Repeat annotation<br> <br> <em>Cabernet Franc feature sequences:</em><br> CDS sequences<br> mRNA sequences<br> Protein sequences<br> <br> <em>RNA sequencing experiment data:</em><br> Raw counts per library per gene<br> Sample key
DOI: 10.5281/zenodo.4550136
title: Spatial Characteristics of Coronavirus Disease 2019 and Their Possible Relationship with Environmental and Meteorological Factors in Hubei Province, China

description: Data set associated with the manuscript published in GeoHealth titled Spatial Characteristics of Coronavirus Disease 2019 and Their Possible Relationship with Environmental and Meteorological Factors in Hubei Province, China.<strong><em> </em></strong> This includes The daily cumulative confirmed COVID-19 cases in Hubei province, the location of meteorology and enviromental monitoring stations, the anomalies of meteorological environmental variables in comparison to 1981-2010 and the anomalies of environmental variables in comparison to 2015-2019.
DOI: 10.5281/zenodo.4550135
title: Spatial Characteristics of Coronavirus Disease 2019 and Their Possible Relationship with Environmental and Meteorological Factors in Hubei Province, China

description: Data set associated with the manuscript published in GeoHealth titled Spatial Characteristics of Coronavirus Disease 2019 and Their Possible Relationship with Environmental and Meteorological Factors in Hubei Province, China.<strong><em> </em></strong> This includes The daily cumulative confirmed COVID-19 cases in Hubei province, the location of meteorology and enviromental monitoring stations, the anomalies of meteorological environmental variables in comparison to 1981-2010 and the anomalies of environmental variables in comparison to 2015-2019.
DOI: 10.25934/00006051.1
title: IPD datapackage for study 'A Phase III, Open-Label, Randomized Study of Atezolizumab (MPDL3280A, Anti-PD-L1 Antibody) in Combination With Carboplatin+Paclitaxel With or Without Bevacizumab Compared With Carboplatin + Paclitaxel + Bevacizumab in Chemotherapy-Naïve Patients With Stage IV Non-Squamous Non-Small Cell Lung Cancer' and research request: 'Neutrophils, NLR and Neutropenia as Predictors of Treatment Efficacy of Atezolizumab Monotherapy and Atezolizumab-Chemotherapy-Combinations'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00006052.1
title: IPD datapackage for study 'A Phase III Multicenter, Randomized, Open-Label Study Evaluating the Efficacy and Safety of Atezolizumab (MPDL3280A, Anti-PD-L1 Antibody) in Combination With Carboplatin+Nab-Paclitaxel for Chemotherapy-Naive Patients With Stage IV Non-Squamous Non-Small Cell Lung Cancer' and research request: 'Neutrophils, NLR and Neutropenia as Predictors of Treatment Efficacy of Atezolizumab Monotherapy and Atezolizumab-Chemotherapy-Combinations'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.20351/29gd20041024
title: SECEGSA Cruise, RV García del Cid

description: SECEGSA Cruise (29GD20041024) carried out on the Research Vessel García del Cid in 2004
DOI: 10.25584/1766293
title: Vanderbilt Alumni Hall

description: This dataset includes processed and raw data from the Vanderbilt Alumni Hall Building (VAH) located on the University of Vanderbilt Campus in Nashville, TN. VAH is a mixed use commercial building (LEED Gold Certified) that consists of classrooms, meeting rooms, office rooms, conference rooms, an exercise room, and others. This dataset spans one year of time-series data from 2019 and includes measurements corresponding to whole building electrical power, thermal power, zone level thermal power, set-point, indoor temperature, humidity, water and air side supply and return temperatures and flow rates as CSV files. In addition to the measurements, a metadata .json file, and a .ttl file to visualize the data as per BRICK schema are also included.
DOI: 10.20351/29gd20041122
title: MAS-1 Cruise, RV García del Cid

description: MAS-1 Cruise (29GD20041122) carried out on the Research Vessel García del Cid in 2004
DOI: 10.5281/zenodo.4556614
title: H&E, TTF1, immunofluorescence staining and Digital Spatial Profiling of histologically heterogeneous lung adenocarcinoma FFPE sections.

description: Please refer to the methods section of the paper for more detailed explanations. In summary: <strong>chuv_imaging_dataset_annotation.xlsx</strong>: table containing imaging assays available for each sample and histologic patterns present. <strong>he_images.zip</strong>: high-resolution images of FFPE sections stained with H&E and acquired at 20x magnification. <strong>ttf1_images.zip</strong>: high-resolution images of FFPE sections stained with TTF1 and acquired at 20x magnification. <strong>if_images.zip</strong>: high-resolution images of FFPE sections assayed with multicolor immunofluorescence (markers: CD20, CD4, CD8, CD68, Ki67) and acquired at 20x magnification. <strong>DSP_data_and_annotations.xlsx</strong>: tables containing Digital Spatial Profiling (DSP) data (in SNR) and annotations for batch1 and batch2. <strong>all_snapshots.zip</strong>: low-resolution snapshots of all images uploaded in this repository (H&E, TTF1, immunofluorescence - with all 5 colors together and with each color separately), with histologic pattern boundaries drawn on the images; immunofluorescence snapshots of DSP ROIs (batch1) and their position on each slide. Color code for histologic pattern boundaries: grey = normal, blue = lepidic, sea green = papillary, orange = acinar, red = solid.<br> Color code for immunofluorescence channels: cyan = CD20, blue = CD4, yellow = CD8, red = CD68, green = Ki67.<br> Color code for DSP snapshots: sea green = CD3, red = CD45, yellow = CD20, blue = DAPI