cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23721/109/1462991
title: internet_outage_adaptive_a32e-20180401 (04/01/2018 to 07/01/2018)

description: To collect this data, all allocated and responsive Internet IP address blocks were pinged by sending ICMP ECHO_REQUEST (PING) packet. The block status was recorded in this data set. Probe was repeated every 11 minutes, and more quickly when uncertain about block status. In all, approximately 3.5M /24 subnets were periodically probed.
DOI: 10.23721/109/1462992
title: internet_outage_adaptive_a32g-20180401 (04/01/2018 to 07/01/2018)

description: To collect this data, all allocated and responsive Internet IP address blocks were pinged by sending ICMP ECHO_REQUEST (PING) packet. The block status was recorded in this data set. Probe was repeated every 11 minutes, and more quickly when uncertain about block status. In all, approximately 3.5M /24 subnets were periodically probed.
DOI: 10.23721/109/1462993
title: internet_outage_adaptive_a32j-20180401 (04/01/2018 to 07/01/2018)

description: To collect this data, all allocated and responsive Internet IP address blocks were pinged by sending ICMP ECHO_REQUEST (PING) packet. The block status was recorded in this data set. Probe was repeated every 11 minutes, and more quickly when uncertain about block status. In all, approximately 3.5M /24 subnets were periodically probed.
DOI: 10.23721/109/1462994
title: internet_outage_adaptive_a32n-20180401 (04/01/2018 to 07/01/2018)

description: To collect this data, all allocated and responsive Internet IP address blocks were pinged by sending ICMP ECHO_REQUEST (PING) packet. The block status was recorded in this data set. Probe was repeated every 11 minutes, and more quickly when uncertain about block status. In all, approximately 3.5M /24 subnets were periodically probed.
DOI: 10.23721/109/1462995
title: internet_outage_adaptive_a32w-20180401 (04/01/2018 to 07/01/2018)

description: To collect this data, all allocated and responsive Internet IP address blocks were pinged by sending ICMP ECHO_REQUEST (PING) packet. The block status was recorded in this data set. Probe was repeated every 11 minutes, and more quickly when uncertain about block status. In all, approximately 3.5M /24 subnets were periodically probed.
DOI: 10.5255/ukda-sn-8281-3
title: Cognitive Function and Ageing Study - Wales: Waves 1-2, 2011-2016
DOI: 10.5255/ukda-sn-8282-4
title: Opinions and Lifestyle Survey, Tobacco Consumption and E-Cigarettes Modules, January - February, April - May, July - August and October - November, 2016
DOI: 10.5517/ccdc.csd.cc1zvzvn
title: CCDC 1843193: Experimental Crystal Structure Determination

description: Related Article: Jian‐Xing Xu,  Xiao‐Feng Wu|2018|Adv.Synth.Catal.|360|3376|doi:10.1002/adsc.201800672
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zz7dl
title: CCDC 1846310: Experimental Crystal Structure Determination

description: Related Article: Chao Yan, Hongwei Yang, Xiujuan Qi, Yunhe Jin, Kangcai Wang, Tianlin Liu, Junjun Tian, Fude Nie, Guangbin Cheng, Qinghua Zhang|2018|Chem.Commun.|54|9333|doi:10.1039/C8CC05562A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zz7fm
title: CCDC 1846311: Experimental Crystal Structure Determination

description: Related Article: Chao Yan, Hongwei Yang, Xiujuan Qi, Yunhe Jin, Kangcai Wang, Tianlin Liu, Junjun Tian, Fude Nie, Guangbin Cheng, Qinghua Zhang|2018|Chem.Commun.|54|9333|doi:10.1039/C8CC05562A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/6bdx6f49b8.1
title: LickFunction

description: Included are files containing computer-rendered blueprints for a mouse lickometer chamber and its components, as well as a script for R made to count licks in .wav lickometer recordings and a plain text file explaining its use.
DOI: 10.17632/99fyztdkgj.1
title: Reconstruction results of the dynamic processes

description: The petal model was selected as a static reference object, and the hemispherical model was moved back and forth on the plane. Reconstruction results of the dynamic processes is shown in Video.
DOI: 10.17632/bfbd3wn8sk.1
title: Repulsive magnetic field assisted laser induced plasma micromachining for high-quality microfabrication

description: Raw data for the paper which named Repulsive magnetic field assisted laser induced plasma micromachining for high-quality microfabrication.
DOI: 10.17632/dmph2p5rcc.1
title: SPATA2 regulates the activation of RIPK1 by modulating linear ubiquitination

description: Stimulation of cells with TNFα leads to the formation of the TNF-R1 signaling complex (TNF-RSC) to mediate downstream cellular fate decision. Activation of the TNF-RSC is modulated by different types of ubiquitination and may lead to cell death, including apoptosis and necroptosis, in both RIPK1-dependent and RIPK1-independent manners. Spata2 (spermatogenesis-associated 2) is an adaptor protein recruited into the TNF-RSC to modulate the interaction between the linear ubiquitin chain assembly complex (LUBAC) and the deubiquitinase CYLD (cylindromatosis). However, the mechanism by which Spata2 regulates the activation of RIPK1 is unclear. Here, we report that Spata2-deficient cells show resistance to RIPK1-dependent apoptosis and necroptosis and are also partially protected against RIPK1-independent apoptosis. Spata2 deficiency promotes M1 ubiquitination of RIPK1 to inhibit RIPK1 kinase activity. Furthermore, we provide biochemical evidence for the USP domain of CYLD and the PUB domain of the SPATA2 complex preferentially deubiquitinating the M1 ubiquitin chain in vitro. Spata2 deficiency also promotes the activation of MKK4 and JNK and cytokine production independently of RIPK1 kinase activity. Spata2 deficiency sensitizes mice to systemic inflammatory response syndrome (SIRS) induced by TNFα, which can be suppressed by RIPK1 inhibitor Nec-1s. Thus, Spata2 can regulate inflammatory response and cell death in both RIPK1-dependent and RIPK1-independent manners.
DOI: 10.17632/j5zr4f967k.1
title: Data of "Role of the alloy grain boundaries in the high temperature oxidation of 22 wt.% Cr ferritic stainless steel for SOFC applications"

description: The raw data obtained from the thermodynamic calculations is given to draw the oxide phase diagram as a function of oxygen pretrial pressure. The thermochemical software FactSage7.0 was used for the calculation. The processed data obtained from the weight gain test of two different samples is given. Discontinuous weight gain test was conducted. For each measurement, we measured a weight increase at least five times to get a reliable average value. The data provided here are the average values. The processed data used for Fig. 5 b) is given. Each column represent a single BSE image.
DOI: 10.17632/w7xcmdy2kn.1
title: Prenatal lipopolysaccharide infection

description: These files contain all the results of data collected after LPS administration on pregnat rats. The files contain behavior, neuromorphological analysis as well as the levels of Zinc and nitric oxide.
DOI: 10.5255/ukda-sn-8279-4
title: Opinions and Lifestyle Survey, Tobacco Consumption and E-Cigarettes Modules, January - February, April - May, July - August and October - November, 2015
DOI: 10.5517/ccdc.csd.cc1zc8h3
title: CCDC 1828085: Experimental Crystal Structure Determination

description: Related Article: Yan-Li Gai, Qin Guo, Xue-Yan Zhao, Yan Chen, Shan Liu, Yuan Zhang, Chun-Xue Zhuo, Cui Yao, Ke-Cai Xiong|2018|Dalton Trans.|47|12051|doi:10.1039/C8DT02313A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zz7mt
title: CCDC 1846317: Experimental Crystal Structure Determination

description: Related Article: Chao Yan, Hongwei Yang, Xiujuan Qi, Yunhe Jin, Kangcai Wang, Tianlin Liu, Junjun Tian, Fude Nie, Guangbin Cheng, Qinghua Zhang|2018|Chem.Commun.|54|9333|doi:10.1039/C8CC05562A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.7910/dvn/ngrrhk/2avpyh
title: Data extraction systematic part 1.xlsx
DOI: 10.7910/dvn/ngrrhk/cmtox8
title: Data extraction systematic part 2.xlsx
DOI: 10.17632/62n6t9vndv.1
title: Damping identification

description: Data used for the paper preparation
DOI: 10.17632/6v6jfjvkg7.1
title: Data for: Reliable Change Index of WHODAS 2.0 in patients with mental health disorders: results of applying Classical Test Theory and Rasch models

description: Dat of study
DOI: 10.17632/7ffp22f78g.1
title: Isolated Bengali Vowel Character Dataset

description: This dataset contains TIF formatted images of handwritten 11 classes of Bengali vowels. Each class contains about 200 samples. 50-60 students from the department of Electrical and Electronic Engineering, University of Dhaka participated in this data collection, ensuring large variability in pattern. Each sample is scanned at 72 dpi.
DOI: 10.17632/87k58mysnd.1
title: Fermented Rice After-wash Water (FRAW)

description: The dataset is a list of bacteria and fungi isolated from fermenter rice afterwash water from three different brand of white rice. The identification was based on morphological and biochemical assay only. The data is an additional dataset for an article that will be link later.
DOI: 10.17632/9k9cgb8mwy.1
title: Remission of human type 2 diabetes requires decrease in liver and pancreas fat content but is dependent upon capacity for beta cell recovery. Taylor et al. (2018)

description: This dataset contains data used to present results in the following paper: Remission of human type 2 diabetes requires decrease in liver and pancreas fat content but is dependent upon capacity for beta cell recovery Taylor et al. (2018), Cell Metabolism 28, 1-10. https://doi.org/10.1016/j.cmet.2018.07.003
DOI: 10.17632/ccddv2cwp9.1
title: CC-DataSet

description: First sample is the data for the exploratort analysis. Second sample is the data for the confirmatory analysis.
DOI: 10.17632/drky3nsgm5.1
title: Data for: Reliable Change Index of WHODAS 2.0 in patients with mental health disorders: results of applying Classical Test Theory and Rasch models

description: Data from instrument used at the MS
DOI: 10.17632/g9fyx69sbt.1
title: Data For: Gender Inequality in Literacy Status and Households Economic Well-Being in Burkina Faso: A Semiparametric Bi-variate Sample Selection Modeling Approach

description: These R formatted datasets are extracted from the 2009 and 2014 versions of the National Survey on Household Living Conditions (EICVM, 2009 and 2014) administered by the National Institute for Statistics and demography (INSD) in Burkina Faso. Collected each over a period of 12 months, the 2009 version contains 8,404 observations, while the 2014 survey has 10411 observations.
DOI: 10.17632/k4t57pnp85.1
title: The list of universities and research institutions with data about papers indexed in the national citation database Russian Index of Science Citation (RISC)

description: "The data about publication activity in universities and research institutions from 2012 to 2016 summarized in RISC reports on organization publication activity and showing the number of publications in eLIBRARY.RU total, RISC only, RISC Core, RSCI journals, Web of Science and Scopus journals, etc. In these reports the distribution of RISC publications by main OECD classification of science fields is also presented. The data on uploading of conference proceedings and article collections by organizations via Science Index service are kindly provided by eLIBRARY.RU. The data was prepared for article: Confidence and RISC: How Russian papers indexed in the national citation database Russian Index of Science Citation (RISC) characterize universities and research institutes / Mark Akoev, Olga Moskaleva and Vladimir Pislyakov // 23rd International Conference on Science, Technology and Innovation STI 2018" Date collected of data May 15th 2018
DOI: 10.17632/r3wmvt7pwf.1
title: Identification, biosynthesis and decapping of NAD-capped RNAs in B. subtilis. Frindert et al.
DOI: 10.17632/wzx9nbwh4d.1
title: India-doped zirconia multi-layered thin film synthesized by atomic layer deposition for IT-SOFCs: Synthesis and electrochemical properties

description: DRX, EDS and EIS
DOI: 10.17632/zdh5brnjv5.2
title: SPATA2 regulates the activation of RIPK1 by modulating linear ubiquitination

description: Stimulation of cells with TNFα leads to the formation of the TNF-R1 signaling complex (TNF-RSC) to mediate downstream cellular fate decision. Activation of the TNF-RSC is modulated by different types of ubiquitination and may lead to cell death, including apoptosis and necroptosis, in both RIPK1-dependent and RIPK1-independent manners. Spata2 (spermatogenesis-associated 2) is an adaptor protein recruited into the TNF-RSC to modulate the interaction between the linear ubiquitin chain assembly complex (LUBAC) and the deubiquitinase CYLD (cylindromatosis). However, the mechanism by which Spata2 regulates the activation of RIPK1 is unclear. Here, we report that Spata2-deficient cells show resistance to RIPK1-dependent apoptosis and necroptosis and are also partially protected against RIPK1-independent apoptosis. Spata2 deficiency promotes M1 ubiquitination of RIPK1 to inhibit RIPK1 kinase activity. Furthermore, we provide biochemical evidence for the USP domain of CYLD and the PUB domain of the SPATA2 complex preferentially deubiquitinating the M1 ubiquitin chain in vitro. Spata2 deficiency also promotes the activation of MKK4 and JNK and cytokine production independently of RIPK1 kinase activity. Spata2 deficiency sensitizes mice to systemic inflammatory response syndrome (SIRS) induced by TNFα, which can be suppressed by RIPK1 inhibitor Nec-1s. Thus, Spata2 can regulate inflammatory response and cell death in both RIPK1-dependent and RIPK1-independent manners.
DOI: 10.5255/ukda-sn-853284
title: Studies of Poverty among the Sub-employed in Three Special Areas, 1968-1969
DOI: 10.5255/ukda-sn-853285
title: Katherine Building, 1885-1962
DOI: 10.5255/ukda-sn-853290
title: Papers of the Disability Alliance, 1973-1998
DOI: 10.5255/ukda-sn-853293
title: Papers of the Child Poverty Action Group, 1965-1998
DOI: 10.7910/dvn/ngrrhk/mw4fyv
title: Data extraction systematic part 3.xlsx
DOI: 10.14457/stou.the.2003.93
title: ผลของการเรียนแบบโครงงานเรื่อง ปัญหาสังคมในวิถีชีวิต ในกลุ่มสาระสังคมศึกษา ศาสนาและวัฒนธรรม ของนักเรียนระดับชั้นมัธยมศึกษาปีที่ 4 โรงเรียนสามร้อยยอดวิทยาคม จังหวัดประจวบคีรีขันธ์
DOI: 10.17632/cc57y2ckr3.2
title: Commonality

description: data base for article commonality in liquidity
DOI: 10.17632/mfk6kmf5zt.1
title: the relaxation modulus master curve of HDPE (trade mark YEM4803T) and the long-term burst pressure of a composite pipe

description: figure 4-Curve fitting to the test data of HDPE tensile relaxation modulus with time figure 4 is the relaxation modulus master curve of HDPE (trade mark YEM4803T). figure 8-Variation of long-term failure pressure with the elapsed time figure 8 shows the long-term failure pressure of a composite pipe (its name is plastic pipe reinforced by cross helically wound steel wires, and thetype is DN200 PN1.6).
DOI: 10.17632/mfk6kmf5zt.2
title: the relaxation modulus master curve of HDPE (trade mark YEM4803T)

description: figure 4-Curve fitting to the test data of HDPE tensile relaxation modulus with time figure 4 is the relaxation modulus master curve of HDPE (trade mark YEM4803T).
DOI: 10.5255/ukda-sn-853295
title: Life Styles and Patterns of Mobility in Hertfordshire Commuter Villages, 1964-1965
DOI: 10.5255/ukda-sn-853296
title: Managers and Their Wives: a Study of Career and Family Relationships in the Middle Class, 1965-1967
DOI: 10.5281/zenodo.1327563
title: Identifier Refinery Conversion Matrixes

description: <strong>identifier-refinery</strong>

Tools and assets for easy and reproducable gene identifier conversion.

<strong>Methods</strong>

This repository is used to build matricies which can convert between different gene identifiers.

These conversion matricies are built by:


	Randomly choosing raw CEL files from NCBI GEO for a given platform accession code (in <code>/cels</code>)
	Reading the CEL header and joining Brainarray (e.g., <code>hgu133plus2hsensgprobe</code>) and Bioconductor (e.g., <code>hgu133plus2.db</code>) (x, y) coordinates
	Finding intersecting probe identifiers
	Extracting supported identifiers and probe IDs from the Bioconductor package
	Filtering on probe IDs and Ensembl Gene IDs in Brainarray
	Writing the output to a conversion TSV file
	Check that all output conversion TSV files have a shared SHA1


<strong>Repository Contents</strong>

<strong>Source Files</strong>

The <code>cels</code> directory contains raw CEL files taken from GEO. The list of supported platforms is in <code>supported_microarray_platforms.csv</code>. Source files can be acquired by running the <code>acquire_cels.py</code> script.

<strong>Docker Image</strong>

The conversion scripts are run on custom Docker images.

Two Dockerfiles are provided in this repository - <code>base</code> Docker image, which is used to install the quire R dependancies, and the <code>pd</code> image, which is used to build the required databases for a given platform.

<strong>Conversion Scripts</strong>

A <code>build_and_convert.py</code> script is provided, which build a unique Docker image for each package, mount the downloaded CEL files as a volume, and then run the gene conversion script <code>R/gene_convert.R</code> inside the image and output the master conversion matrix. Output TSV files live in <code>cels/out/</code>.

<strong>Reproducing</strong>

The entire process can be reproduced by running the following command script from a fresh checkout of this repository. It will take some time:

<pre><code>$ ./generate_matricies_from_scratch.sh
</code></pre>

You can also choose to only build a specific platform, ex.,:

<pre><code>$ ./generate_matricies_from_scratch.sh celegans
</code></pre>

<strong>Identifiers</strong>

Released assets in this repository are availble under the DOI, <code>xyz:1.2.3.4</code>, which can be seen on Zenodo here.

<strong>Related Projects</strong>


	AlexsLemonade/refinebio


<strong>Copyright</strong>

<code>identifier-refinery</code> output assets are released under a CC0 1.0 Universal license. All code is released under the BSD 3-clause license. Input assets are property of the original providers to NCBI GEO, but may be freely downloaded and redistributed unless otherwise noted.

 

https://github.com/AlexsLemonade/identifier-refinery
DOI: 10.5517/ccdc.csd.cc1jv6sc
title: CCDC 1425373: Experimental Crystal Structure Determination

description: Related Article: Mezna Saleh Altowyan, Assem Barakat, Saied M. Soliman, Abdullah Mohammed Al-Majid, M. Ali, Yaseen A.M.M. Elshaier, Hazem A. Ghabbour|2019|J.Mol.Struct.|1175|524|doi:10.1016/j.molstruc.2018.07.105
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1jvl21
title: CCDC 1425723: Experimental Crystal Structure Determination

description: Related Article: Mezna Saleh Altowyan, Assem Barakat, Saied M. Soliman, Abdullah Mohammed Al-Majid, M. Ali, Yaseen A.M.M. Elshaier, Hazem A. Ghabbour|2019|J.Mol.Struct.|1175|524|doi:10.1016/j.molstruc.2018.07.105
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1ltc0s
title: CCDC 1484125: Experimental Crystal Structure Determination

description: Related Article: Riadh Bourzami, Hakima Chenefa AitYoucef, Noudjoud Hamdouni, Miloud Sebais|2018|Chem.Phys.Lett.|711|220|doi:10.1016/j.cplett.2018.08.002
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pzx1m
title: CCDC 1578831: Experimental Crystal Structure Determination

description: Related Article: Miguel Guerrero, Roger Pou, Laura Bayés-García, Mercè Font-Bardia, Jordi Sort, Josefina Pons, José A. Ayllón|2018|Inorg.Chem.Commun.|96|34|doi:10.1016/j.inoche.2018.07.047
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pzx2n
title: CCDC 1578832: Experimental Crystal Structure Determination

description: Related Article: Miguel Guerrero, Roger Pou, Laura Bayés-García, Mercè Font-Bardia, Jordi Sort, Josefina Pons, José A. Ayllón|2018|Inorg.Chem.Commun.|96|34|doi:10.1016/j.inoche.2018.07.047
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pzx3p
title: CCDC 1578833: Experimental Crystal Structure Determination

description: Related Article: Miguel Guerrero, Roger Pou, Laura Bayés-García, Mercè Font-Bardia, Jordi Sort, Josefina Pons, José A. Ayllón|2018|Inorg.Chem.Commun.|96|34|doi:10.1016/j.inoche.2018.07.047
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.