cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/vx9n7ckvz9.2
title: Data for: Expression of the autophagy-related protein LC3B in granulosa cells, cumulus cells, and oocyte during atresia of pig antral follicles

description: For a long time, in mammals apoptosis was accepted as the type of programmed cell death (PCD) occurring in ovarian follicles undergoing atresia. However, recent studies have suggested that autophagy may be an alternative mechanism involved in follicle depletion, working independently or in tandem with apoptosis. This research investigated by western blot and immunofluorescence the expression of LC3B protein in freshly collected granulosa cells (GC), cumulus cells (CC), and oocytes to evaluate the involvement of autophagy in the process of antral follicle atresia in sexually mature sows. Moreover, apoptosis was analysed by Annexin V and TUNEL assays in the same cellular cohorts to evaluate the correlation between the two processes. Our immunostaining results show that the autophagy is induced in the majority of GC, CC, and oocytes collected from early and advanced atretic follicles. The quantitative results of western blot analysis demonstrate that a significant (P &lt; 0.05) and progressive increase of expression of the autophagy-related form of the protein (LC3B-II) takes places in these cells compared to healthy ones. Moreover, our data confirm that apoptosis occurs in GC of atretic follicles, thus showing that in pigs, like in rats and humans, apoptosis and autophagy work in GC as combined processes of PCD for antral follicle depletion. Finally, we did not detect apoptosis whereas we detected an overexpression of LC3B-II in CC and oocytes of atretic follicles, thus we suggest that in these cells the two processes work independently, with autophagy acting like a cytoprotective rather than a PCD mechanism.
DOI: 10.17632/yjxxd64wz7.1
title: Data for: Risk prediction and factors risk analysis based on IFOA-GRNN and aprior algorithms: Application of artificial intelligence in accident prevention

description: statistical data
DOI: 10.17632/zypss83gvn.1
title: Data for: Experimental investigation of mini-hydrocyclones with different vortex finder depths using Particle Imaging Velocimetry
DOI: 10.5061/dryad.26t7cs8.1
title: Data from: Genome wide association mapping of floral traits in cultivated sunflower (Helianthus annuus)
DOI: 10.5061/dryad.26t7cs8.1/1.1
title: DatasetS1_metadata

description: Metadata for other files, including units and explanations for traits to accompany the text.
DOI: 10.5061/dryad.26t7cs8.1/2.1
title: DatasetS1_greenhouse_line_means

description: Line means for floral traits assessed in the greenhouse.
DOI: 10.5061/dryad.26t7cs8.1/3.1
title: DatasetS1_field_line_means

description: Line means for floral traits assessed in the field.
DOI: 10.5061/dryad.26t7cs8.2
title: Data from: Genome wide association mapping of floral traits in cultivated sunflower (Helianthus annuus)
DOI: 10.5061/dryad.26t7cs8.2/1.2
title: DatasetS1_metadata

description: Metadata for other files, including units and explanations for traits to accompany the text.
DOI: 10.5061/dryad.26t7cs8.2/2.2
title: DatasetS1_greenhouse_line_means

description: Line means for floral traits assessed in the greenhouse.
DOI: 10.5061/dryad.26t7cs8.2/3.2
title: DatasetS1_field_line_means

description: Line means for floral traits assessed in the field.
DOI: 10.5061/dryad.26t7cs8.2/4.2
title: Appendix_marker_sequence_information_271x5788

description: Sequence information for the 5788 SNP markers and genotype information across the 271 inbred lines of sunflower used in Dowell et al. 2019 (https://doi.org/10.1093/jhered/esz013). This data is a subset of SNPs reported in Bachlava et al. 2012 (https://doi.org/10.1371/journal.pone.0029814) with additional information including gene ontology information provided in the supplement to that paper.
DOI: 10.5061/dryad.jj4g11s/48
title: KRAS_10-1_144149_filtered.csv

description: A gzipped csv documenting the tag, read sequence, and associated qualities of all reads matching the majority read length (documented in read lengths csv) of gDNA 10^-1 sample, replicate1. The header information is in the README.txt file.
DOI: 10.5061/dryad.jj4g11s/49
title: KRAS_10-1_145150_filtered.csv

description: A gzipped csv documenting the tag, read sequence, and associated qualities of all reads matching the majority read length (documented in read lengths csv) of gDNA 10^-1 sample, replicate2. The header information is in the README.txt file.
DOI: 10.5061/dryad.jj4g11s/50
title: KRAS_MUT_144150_filtered.csv

description: A gzipped csv documenting the tag, read sequence, and associated qualities of all reads matching the majority read length (documented in read lengths csv) of gDNA mutant only sample, replicate1. The header information is in the README.txt file.
DOI: 10.5061/dryad.jj4g11s/51
title: KRAS_MUT_145151_filtered.csv

description: A gzipped csv documenting the tag, read sequence, and associated qualities of all reads matching the majority read length (documented in read lengths csv) of gDNA mutant only sample, replicate2. The header information is in the README.txt file.
DOI: 10.5061/dryad.jj4g11s/52
title: PCR_stds_error_pos

description: A csv file documenting the observed error at targeted position (position 10 of reference) for each PCR-based sample investigated.
DOI: 10.5061/dryad.jj4g11s/54
title: Kras_WT_132133_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based WT sample, replicate 2.
DOI: 10.5061/dryad.jj4g11s/55
title: Kras_WT_132134_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based WT sample, replicate 3.
DOI: 10.5061/dryad.mg5h6dr/1
title: Book1

description: ANOVA for the mass yield, ash content, volatile content and fixed carbon content of CS and PKS bioadsorbent. Means followed by the same letter in the same column are not significantly different at p ≤ 0.05 according to Tukey’s multiple comparison test.
DOI: 10.5061/dryad.mg5h6dr/2
title: Book2

description: Experimental design matrix and results
DOI: 10.5061/dryad.mg5h6dr/3
title: Book3

description: N2-adsorption isotherm for the non-treated CS and PKS bioadsorbent carbonized with temperature at 700°C for 75 min and CS and PKS bioadsorbent pretreated with H3PO4 with temperature of 80°C under carbonization temperature at 700°C for 75 min at 77 K.
DOI: 10.5061/dryad.mg5h6dr/4
title: Book4

description: FTIR for the non-treated CS and PKS bioadsorbent carbonized with temperature at 700°C for 75 min and CS and PKS bioadsorbent pretreated with H3PO4 with temperature of 80°C under carbonization temperature at 700°C for 75 min.
DOI: 10.5061/dryad.mg5h6dr/5
title: Book5

description: TGA for the non-treated CS and PKS bioadsorbent carbonized with temperature at 700°C for 75 min and CS and PKS bioadsorbent pretreated with H3PO4 with a temperature of 80°C under carbonization temperature at 700°C for 75 min.
DOI: 10.5061/dryad.v6m6454/1
title: Bird point counts and plant species presence/absence for plots

description: a single csv file has the plant occurrences (present=1, absent=0) for species/taxa (columns) in plots (rows), followed by bird point counts (integers) for species (columns) in points (rows). Plot/point locations are included (decimal lon/lat). There is a line of description ahead of the header line of each dataset. Bird species and plant species lists can be found in the Supporting Information of the article (Tables S2 and S3).
DOI: 10.5061/dryad.v8j2vk5/1
title: 2k/1b full coding region sequence alignment

description: Contains 109 sequences of Hepatitis C virus circulating recombinant form 2k/1b spanning the entire coding region. Aligned with MUSCLE v2.0 in AliView and edited manually.
DOI: 10.5061/dryad.v8j2vk5/2
title: 2k/1b densely sampled coding region sequence alignment

description: Contains 109 sequences of Hepatitis C virus circulating recombinant form 2k/1b spanning the most densely sampled coding regions (i.e. at least 25 sequences in that region): Core/E1, NS2/NS3, NS4B, NS5A/NS5B, all concatenated. Aligned with MUSCLE v2.0 in AliView and edited manually.
DOI: 10.5441/001/1.72hh609t/1
title: Red Fox (Vulpes vulpes) - Scotia NSW Australia

description: Carter A, Potts JM, Roshier DA (2019) Toward reliable population density estimates of partially marked populations using spatially explicit mark-resight methods. Ecology and Evolution 9(4): 2131-2141. doi:10.1002/ece3.4907
description: (1) Camera traps are used increasingly to estimate population density for elusive and difficult to observe species. A standard practice for mammalian surveys is to place cameras on roads, trails, and paths to maximize detections and/or increase efficiency in the field. However, for many species it is unclear whether track‐based camera surveys provide reliable estimates of population density. (2) Understanding how the spatial arrangement of camera traps affects population density estimates is of key interest to contemporary conservationists and managers given the rapid increase in camera‐based wildlife surveys. (3) We evaluated the effect of camera‐trap placement, using several survey designs, on density estimates of a widespread mesopredator, the red fox Vulpes vulpes, over a two‐year period in a semi‐arid conservation reserve in south‐eastern Australia. Further, we used the certainty in the identity and whereabouts of individuals (via GPS collars) to assess how resighting rates of marked foxes affect density estimates using maximum likelihood spatially explicit mark–resight methods. (4) Fox detection rates were much higher at cameras placed on tracks compared with off‐track cameras, yet in the majority of sessions, camera placement had relatively little effect on point estimates of density. However, for each survey design, the precision of density estimates varied considerably across sessions, influenced heavily by the absolute number of marked foxes detected, the number of times marked foxes was resighted, and the number of detection events of unmarked foxes. (5) Our research demonstrates that the precision of population density estimates using spatially explicit mark–resight models is sensitive to resighting rates of identifiable individuals. Nonetheless, camera surveys based either on‐ or off‐track can provide reliable estimates of population density using spatially explicit mark–resight models. This underscores the importance of incorporating information on the spatial behavior of the subject species when planning camera‐trap surveys.
DOI: 10.17632/95ytmv9jym.1
title: Data for: Automated demarcation of the homogeneous domains of trace distribution within a rock mass based on GLCM and ISODATA

description: In view of the irregular trace distribution of rock discontinuities, rock mass appears as both a statistical distribution and a texture distribution in the spatial image. This paper proposes a new method on statistical texture analysis for automated demarcating the homogeneous domains of trace distribution within a rock mass. Grey-Level Co-occurrence Matrix (GLCM) is used to quantify the statistical texture features of trace distribution. Relativity, Inverse Difference Moment and Entropy are screened from ten texture parameters of GLCM using robustness analysis and using principal components analysis. The reliability of three screened texture parameters is verified by comparing the Chebyshev polynomials fitting of three screened texture parameters with Normal distribution, Fisher distribution, and Exponent distribution using χ2 testing. Automated demarcation of the homogeneous domains is implemented by means of classifying three texture parameters of Relativity, Inverse Difference Moment and Entropy in a moving window using the Iterative Self-Organizing Data Analysis Techniques Algorithm (ISODATA). The screening process of texture parameters and a case study indicates that texture parameters and automated demarcation method is so robust, reliable, and efficient that it could replace the traditional representation of the probability statistics in trace distribution and greatly save a lot of manual labor in a large-scale domain.
DOI: 10.17632/ckxsjvfsyc.1
title: Data for: Coal-fired chemical looping combustion coupled with a high-efficient annular carbon stripper

description: The data is different operating conditions and primary results in the 10kWth coal-fired CLC system
DOI: 10.17632/ckxsjvfsyc.2
title: Data for: Coal-fired chemical looping combustion coupled with a high-efficient annular carbon stripper

description: The data is different operating conditions and primary results in the 10kWth coal-fired CLC system
DOI: 10.17632/gdf39wbm97.1
title: Data for: Effects of carbohydrate types on larval development and adult traits in a polyphagous fruit fly

description: Data associated with the publication 'Effects of carbohydrate types on larval development and adult traits in a polyphagous fruit fly' by Morimoto et al.
DOI: 10.17632/nydn6ydvvp.1
title: Data for: The impact of chronic renal disease on bariatric perioperative outcome: a MBSAQIP matched analysis

description: Excel summary of MBSAQIP data analysis
DOI: 10.25952/5e55ae5a437dc
title: Unified Protocol for Emotional Disorders - A Pilot Feasability Trial

description: Residents of alcohol and drug (AOD) rehabilitation programs commonly present with complex comorbid presentations, including substance use disorders and a range of anxiety and affective disorders. The Unified Protocol (UP) is a transdiagnostic treatment for emotional disorders, with growing empirical evidence for effective outcomes. The current study aimed to investigate the effectiveness, acceptability and feasibility of UP treatment of an adult group in an Australian rural AOD rehabilitation setting. A mixed methods, single-case experimental design was used, and treatment began in October 2018. Baseline, treatment and follow-up data was collected, and eight participants completed the treatment. Quantitative results supported a reduction in depression and anxiety symptoms during the treatment, but this was not sustained at follow-up. Improvements in quality of life and emotional regulation were not supported. Low UP acceptability was informed by qualitative feedback from participants and case managers post treatment. Feasibility of UP group treatment in an AOD setting was considered, with recommendations made for future studies.
DOI: 10.5061/dryad.1k8n90p/1
title: Analysis scripts and data
DOI: 10.5061/dryad.2np959c/1
title: Supplementary_Materials_scripts

description: Supplementary materials and Appendix
DOI: 10.5061/dryad.7cn76k3/1
title: Data
DOI: 10.5061/dryad.jj4g11s/53
title: Kras_WT_132132_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based WT sample, replicate 1.
DOI: 10.5061/dryad.jj4g11s/56
title: Kras_10-5_132135_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based 10^-5 sample, replicate 1.
DOI: 10.5061/dryad.jj4g11s/57
title: Kras_10-5_132136_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based 10^-5 sample, replicate 2.
DOI: 10.5061/dryad.jj4g11s/58
title: Kras_10-5_132149_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based 10^-5 sample, replicate 3.
DOI: 10.5061/dryad.jj4g11s/59
title: Kras_10-4_132137_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based 10^-4 sample, replicate 1.
DOI: 10.5061/dryad.jj4g11s/60
title: Kras_10-4_132138_nuc_counts

description: A csv file containing the nucleotide counts for each position of PCR-based 10^-4 sample, replicate 2.
DOI: 10.5061/dryad.t8q43fv/4
title: Exp1_mixed model_plus_ fes1-fes2.sas

description: SAS code for analysis of greenhouse Experiment 1
DOI: 10.5061/dryad.t8q43fv/5
title: Exp2_mixed model plus_Fes1_Fes2_.sas

description: SAS code for analysis of greenhouse Experiment 2.
DOI: 10.5061/dryad.t8q43fv/6
title: MetaAnalysis.sas

description: SAS code for analysis of all studies included in the meta-analysis
DOI: 10.5061/dryad.t8q43fv/7
title: Exp1_data

description: Data file for greenhouse Experiment 1
DOI: 10.5061/dryad.t8q43fv/8
title: Exp2_data

description: Datafile for greenhouse Experiment 2
DOI: 10.5061/dryad.t8q43fv/9
title: MetaAnalysis_data

description: Datafile for meta-analysis
DOI: 10.5061/dryad.v8j2vk5/10
title: Alignment containing HCV 1a full genomes and recombinant 2b/1a hemigenomes

description: All publicly available HCV 1a sequences were downloaded from GenBank and the Los Alamos National Laboratories (LANL). These were aligned with 2b/1a hemigenomes, representing the 1a portion of the coding region separated at the Recombination Detection Program (RDP)-inferred breakpoint, using the fast option in MAFFT version 7 in AliView and edited manually. Recombinant genomes were acquired from this study or these databases.
DOI: 10.5061/dryad.v8j2vk5/11
title: Alignment containing HCV 2b full genomes and recombinant 2b/1a hemigenomes

description: All publicly available HCV 2b sequences were downloaded from GenBank and the Los Alamos National Laboratories (LANL). These were aligned with 2b/1a hemigenomes, representing the 2b portion of the coding region separated at the Recombination Detection Program (RDP)-inferred breakpoint, using the fast option in MAFFT version 7 in AliView and edited manually. Recombinant genomes were acquired from this study or these databases.
DOI: 10.5061/dryad.v8j2vk5/3
title: Caucasus sensitivity analysis MCC tree

description: Maximum clade credibility (MCC) tree from country of origin phylogeographic Caucasus sensitivity analysis. The Caucasus mountain countries Armenia, Azerbaijan, and Georgia are combined into a single geographic location.
DOI: 10.5061/dryad.v8j2vk5/4
title: 2k/1b dense genome 1 GTRΓ4, 1 clock country of origin MCC tree

description: Maximum clade credibility (MCC) tree from country of origin phylogeographic analysis. Performed on posterior distribution of trees from densely sampled genome analysis with a single GTRΓ4 substitution model and a single uncorrelated relaxed lognormal clock.
DOI: 10.5061/dryad.v8j2vk5/5
title: 2k/1b dense genome 4 GTRΓ4, 1 clock country of origin MCC tree

description: Maximum clade credibility (MCC) tree from country of origin phylogeographic analysis. Performed on posterior distribution of trees from densely sampled genome analysis with four partitioned GTRΓ4 substitution models and a single uncorrelated relaxed lognormal clock.
DOI: 10.5061/dryad.v8j2vk5/6
title: 2k/1b dense genome 4 GTRΓ4, 4 clock country of origin MCC tree

description: Maximum clade credibility (MCC) tree from country of origin phylogeographic analysis. Performed on posterior distribution of trees from densely sampled genome analysis with four partitioned GTRΓ4 substitution models and four uncorrelated relaxed lognormal clocks.
DOI: 10.5061/dryad.v8j2vk5/7
title: 2k/1b full genome 1 GTRΓ4, 1 clock country of origin MCC tree

description: Maximum clade credibility (MCC) tree from country of origin phylogeographic analysis. Performed on posterior distribution of trees from full coding region analysis with a single GTRΓ4 substitution model and a single uncorrelated relaxed lognormal clock.
DOI: 10.5061/dryad.v8j2vk5/8
title: 2k/1b full genome 9 GTRΓ4, 1 clock country of origin MCC tree

description: Maximum clade credibility (MCC) tree from country of origin phylogeographic analysis. Performed on posterior distribution of trees from full coding region analysis with nine partitioned GTRΓ4 substitution models and a single uncorrelated relaxed lognormal clock.
DOI: 10.5061/dryad.v8j2vk5/9
title: 2k/1b full genome 9 GTRΓ4, 9 clock country of origin MCC tree

description: Maximum clade credibility (MCC) tree from country of origin phylogeographic analysis. Performed on posterior distribution of trees from full coding region analysis with nine partitioned GTRΓ4 substitution models and nine uncorrelated relaxed lognormal clocks.
DOI: 10.5441/001/1.72hh609t/2
title: Red Fox (Vulpes vulpes) - Scotia NSW Australia-reference-data

description: Carter A, Potts JM, Roshier DA (2019) Toward reliable population density estimates of partially marked populations using spatially explicit mark-resight methods. Ecology and Evolution 9(4): 2131-2141. doi:10.1002/ece3.4907
description: (1) Camera traps are used increasingly to estimate population density for elusive and difficult to observe species. A standard practice for mammalian surveys is to place cameras on roads, trails, and paths to maximize detections and/or increase efficiency in the field. However, for many species it is unclear whether track‐based camera surveys provide reliable estimates of population density. (2) Understanding how the spatial arrangement of camera traps affects population density estimates is of key interest to contemporary conservationists and managers given the rapid increase in camera‐based wildlife surveys. (3) We evaluated the effect of camera‐trap placement, using several survey designs, on density estimates of a widespread mesopredator, the red fox Vulpes vulpes, over a two‐year period in a semi‐arid conservation reserve in south‐eastern Australia. Further, we used the certainty in the identity and whereabouts of individuals (via GPS collars) to assess how resighting rates of marked foxes affect density estimates using maximum likelihood spatially explicit mark–resight methods. (4) Fox detection rates were much higher at cameras placed on tracks compared with off‐track cameras, yet in the majority of sessions, camera placement had relatively little effect on point estimates of density. However, for each survey design, the precision of density estimates varied considerably across sessions, influenced heavily by the absolute number of marked foxes detected, the number of times marked foxes was resighted, and the number of detection events of unmarked foxes. (5) Our research demonstrates that the precision of population density estimates using spatially explicit mark–resight models is sensitive to resighting rates of identifiable individuals. Nonetheless, camera surveys based either on‐ or off‐track can provide reliable estimates of population density using spatially explicit mark–resight models. This underscores the importance of incorporating information on the spatial behavior of the subject species when planning camera‐trap surveys.
DOI: 10.17632/33s7p9s6bc.1
title: Data for: Effects of car electronics penetration, integration and downsizing on their recycling potentials

description: - Historical trends for car typology, penetration and unit mass of two representative automobile electric and electronic devices. - Dynamic MFA model of Swiss cars, including numerical solution, parameter data and calibration.
DOI: 10.17632/3833r824d6.1
title: Data for: Seasonal changes in the middle atmosphere of Titan from Cassini/CIRS observations: temperature and trace species abundance profiles

description: Each FITS file contains spectra used and the thermal and abundances profiles (C2H2, C2H4, C2H6, CH3CCH, C3H8, C4H2, C6H6, CO2, HCN, HC3N) for a given observation sequence (the FITS file name). The FITS file contains also the NESR (Noise Equivalent Spectral Radiance) used in the study. We add a README.txt file to help the user to extract the information contains in the FITS file with an IDL or Python environment.
DOI: 10.17632/48v7k9j3n5.1
title: Data for: Case Report: 19M old boy with Morgagni Hernia and incidentally discovered malrotation

description: Concurrent malrotation with Morgagni hernia
DOI: 10.17632/84sk2v5dx4.1
title: Data for: Risk of Ipsilateral Deep Vein Thromnbosis after use of AngioSeal closure device in Aneurysmal Subarachnoid Hemorrhage Patients

description: Dataset including retrospective data for subarachnoid hemorrhage patients at a single institution