cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10041554
title: Additional file 1: of Variation in pigmentation gene expression is associated with distinct aposematic color morphs in the poison frog Dendrobates auratus

description: Table S1. Differentially expressed genes. A list of genes that were differentially expressed and relevant test statistics. (CSV 482 kb)
DOI: 10.6084/m9.figshare.10041557
title: Additional file 2: of Variation in pigmentation gene expression is associated with distinct aposematic color morphs in the poison frog Dendrobates auratus

description: Table S2. Fixed genomic variants of color genes. Contig, SNP position, gene name, and whether these changes produce synonymous or non-synonymous changes across color morphs. (CSV 2 kb)
DOI: 10.6084/m9.figshare.10041554.v1
title: Additional file 1: of Variation in pigmentation gene expression is associated with distinct aposematic color morphs in the poison frog Dendrobates auratus

description: Table S1. Differentially expressed genes. A list of genes that were differentially expressed and relevant test statistics. (CSV 482 kb)
DOI: 10.6084/m9.figshare.10041557.v1
title: Additional file 2: of Variation in pigmentation gene expression is associated with distinct aposematic color morphs in the poison frog Dendrobates auratus

description: Table S2. Fixed genomic variants of color genes. Contig, SNP position, gene name, and whether these changes produce synonymous or non-synonymous changes across color morphs. (CSV 2 kb)
DOI: 10.6084/m9.figshare.10041533
title: Additional file 1: of High-resolution analysis of multi-copy variant surface glycoprotein gene expression sites in African trypanosomes

description: Table containing RNA-seq and RIT-seq data. (Excel 7530Â kb)
DOI: 10.6084/m9.figshare.10041533.v1
title: Additional file 1: of High-resolution analysis of multi-copy variant surface glycoprotein gene expression sites in African trypanosomes

description: Table containing RNA-seq and RIT-seq data. (Excel 7530Â kb)
DOI: 10.6084/m9.figshare.10041353
title: Additional file 1: of Erratum to: Pneumococcal lower respiratory tract infections in adults: an observational caseâ control study in primary care in Belgium

description: Changes in UAD results. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.10041353.v1
title: Additional file 1: of Erratum to: Pneumococcal lower respiratory tract infections in adults: an observational caseâ control study in primary care in Belgium

description: Changes in UAD results. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.10041254
title: Additional file 4: of Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures

description: Table S6 Random Forests (RF) models for each OTU (no significant values are reported as "0"). (XLSX 660 kb)
DOI: 10.6084/m9.figshare.10041260
title: Additional file 5: of Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures

description: Bacteria and Archaea Phyla correlations. Table S4 A1 Bacteria Relative Frequency (overall abundance &gt;0.5%). Table S4 A2 Bacteria Relative Frequency (overall abundance &lt;0.5%). Table S4 B1 Archaea Relative Frequency (related to Bacteria %). Table S4 B2 Archaea Relative Frequency (Only Archaea). Table S4 C Pearson (r) and Spearman (p) correlation indexes between soil parameters and the relative abundance of archaeal and bacterial phyla (only significant values are shown: r or ? &gt;0.4 or
DOI: 10.6084/m9.figshare.10041254.v1
title: Additional file 4: of Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures

description: Table S6 Random Forests (RF) models for each OTU (no significant values are reported as "0"). (XLSX 660 kb)
DOI: 10.6084/m9.figshare.10041260.v1
title: Additional file 5: of Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures

description: Bacteria and Archaea Phyla correlations. Table S4 A1 Bacteria Relative Frequency (overall abundance &gt;0.5%). Table S4 A2 Bacteria Relative Frequency (overall abundance &lt;0.5%). Table S4 B1 Archaea Relative Frequency (related to Bacteria %). Table S4 B2 Archaea Relative Frequency (Only Archaea). Table S4 C Pearson (r) and Spearman (p) correlation indexes between soil parameters and the relative abundance of archaeal and bacterial phyla (only significant values are shown: r or ? &gt;0.4 or
DOI: 10.6084/m9.figshare.10041233
title: Additional file 1: of Computational approach to predict species-specific type III secretion system (T3SS) effectors using single and multiple genomes

description: Statistical analysis of the 21 attributes for the four organisms used in this studies. SD denotes standard deviation. Attribute values that have statistically significant differences between the positive and negative sets are highlighted. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.10041233.v1
title: Additional file 1: of Computational approach to predict species-specific type III secretion system (T3SS) effectors using single and multiple genomes

description: Statistical analysis of the 21 attributes for the four organisms used in this studies. SD denotes standard deviation. Attribute values that have statistically significant differences between the positive and negative sets are highlighted. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.12866261
title: Bioclimatic gradients and soil property trends from northernmost mainland Norway to the Svalbard archipelago. Does the arctic biome extend into mainland Norway?

description: This dataset is part of article " Bioclimatic gradients and soil property trends from Northernmost mainland Norway to the Svalbard archipelago. Does the arctic biome extend into mainland Norway? The materials and methods of sampling have been described extensively in the arcticle.
DOI: 10.6084/m9.figshare.10040966
title: Additional file 8: of Closely-related Photobacterium strains comprise the majority of bacteria in the gut of migrating Atlantic cod (Gadus morhua)

description: Properties of 20 mature Atlantic cod sampled for this study in an open ocean outside of TromsĂ¸, Norway. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.10040966.v1
title: Additional file 8: of Closely-related Photobacterium strains comprise the majority of bacteria in the gut of migrating Atlantic cod (Gadus morhua)

description: Properties of 20 mature Atlantic cod sampled for this study in an open ocean outside of TromsĂ¸, Norway. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.10040948
title: Additional file 2: of Closely-related Photobacterium strains comprise the majority of bacteria in the gut of migrating Atlantic cod (Gadus morhua)

description: Sequencing statistics of the fecal samples. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.10040948.v1
title: Additional file 2: of Closely-related Photobacterium strains comprise the majority of bacteria in the gut of migrating Atlantic cod (Gadus morhua)

description: Sequencing statistics of the fecal samples. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.10040867
title: MOESM2 of Cold spell en route delays spring arrival and decreases apparent survival in a long-distance migratory songbird

description: Additional file 2. Raw sunrise and sunset data recorded by the geolocators.
DOI: 10.6084/m9.figshare.10040867.v1
title: MOESM2 of Cold spell en route delays spring arrival and decreases apparent survival in a long-distance migratory songbird

description: Additional file 2. Raw sunrise and sunset data recorded by the geolocators.
DOI: 10.5281/zenodo.4001719
title: Machine learning for buildings' characterization and power-law recovery of urban metrics

description: We focus on a critical component of the city: its building stock, which holds much of its socio-economic activities. In our case, the lack of a comprehensive database about their features and its limitation to a surveyed subset lead us to adopt data-driven techniques to extend our knowledge to the near-city-scale. Neural networks and random forests are applied to identify the buildings’ number of floors and construction periods’ dependencies on a set of shape features: area, perimeter, and height along with the annual electricity consumption, relying on a surveyed data in the city of Beirut. The predicted results are then compared with established scaling laws of urban forms, which constitutes a further consistency check and validation of our workflow.
DOI: 10.6084/m9.figshare.12355046
title: Small Intestinal Neuroendocrine Tumor (scRNA-seq)

description: 10x genomic single cell RNA sequencing of human small intestinal neurodenocrine tumor samples. <br>
DOI: 10.6084/m9.figshare.10040735
title: Additional file 1: of Some DNM2 mutations cause extremely severe congenital myopathy and phenocopy myotubular myopathy

description: Clinical, molecular, histopathological and ultrastructural findings for the patients. Table S1 Clinical and molecular findings in the DNM2 severe cases. Figure S1 Histopathological and ultrastructural findings for the patients. Patients 1, 2 and 3: Hematoxilin-eosin (HE) staining of muscles showing fibers with centralized nuclei. Patient 1: ATPase at pH 9.4 showing type I (pale) and type II (dark) fibers. Patient 3: ATPase at pH 4.6 showing type 1 fibers dark and type 2 fibers less stained. Scale bars 20 μm. (ZIP 46909 kb)
DOI: 10.6084/m9.figshare.10040735.v1
title: Additional file 1: of Some DNM2 mutations cause extremely severe congenital myopathy and phenocopy myotubular myopathy

description: Clinical, molecular, histopathological and ultrastructural findings for the patients. Table S1 Clinical and molecular findings in the DNM2 severe cases. Figure S1 Histopathological and ultrastructural findings for the patients. Patients 1, 2 and 3: Hematoxilin-eosin (HE) staining of muscles showing fibers with centralized nuclei. Patient 1: ATPase at pH 9.4 showing type I (pale) and type II (dark) fibers. Patient 3: ATPase at pH 4.6 showing type 1 fibers dark and type 2 fibers less stained. Scale bars 20 μm. (ZIP 46909 kb)
DOI: 10.6084/m9.figshare.10040663
title: Additional file 2: of Role of PRY-1/Axin in heterochronic miRNA-mediated seam cell development

description: Table S1. A list of miRNAs in pry-1(mu38) animals. The file contains two spreadsheets that list all miRNAs identified by RNA-Seq experiment (used for volcano plot, see Fig. 3a) and DE miRNAs. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.10040663.v1
title: Additional file 2: of Role of PRY-1/Axin in heterochronic miRNA-mediated seam cell development

description: Table S1. A list of miRNAs in pry-1(mu38) animals. The file contains two spreadsheets that list all miRNAs identified by RNA-Seq experiment (used for volcano plot, see Fig. 3a) and DE miRNAs. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.10040546
title: Additional file 6: of Development and validation of a simplified method to generate human microglia from pluripotent stem cells

description: Table S4. Differential expression analysis comparing IDE-treated microglia to TGFB control microglia or fetal and adult cultured microglia. (XLSX 11597 kb)
DOI: 10.6084/m9.figshare.10040549
title: Additional file 7: of Development and validation of a simplified method to generate human microglia from pluripotent stem cells

description: Table S5. Catelog numbers for all materials used in this manuscript. (XLSX 45686 kb)
DOI: 10.6084/m9.figshare.10040549.v1
title: Additional file 7: of Development and validation of a simplified method to generate human microglia from pluripotent stem cells

description: Table S5. Catelog numbers for all materials used in this manuscript. (XLSX 45686 kb)
DOI: 10.6084/m9.figshare.10040546.v1
title: Additional file 6: of Development and validation of a simplified method to generate human microglia from pluripotent stem cells

description: Table S4. Differential expression analysis comparing IDE-treated microglia to TGFB control microglia or fetal and adult cultured microglia. (XLSX 11597 kb)
DOI: 10.6084/m9.figshare.10040537
title: MOESM3 of Role of magnesium ions in the reaction mechanism at the interface between Tm1631 protein and its DNA ligand

description: Additional file 3. PDB structures for all studied mechanisms.
DOI: 10.6084/m9.figshare.10040537.v1
title: MOESM3 of Role of magnesium ions in the reaction mechanism at the interface between Tm1631 protein and its DNA ligand

description: Additional file 3. PDB structures for all studied mechanisms.
DOI: 10.6084/m9.figshare.10040480
title: Additional file 11: of Tau phosphorylation regulates the interaction between BIN1â s SH3 domain and Tauâ s proline-rich domain

description: A movie showing 3D images processed with Imaris software. The PLA (BIN1/total Tau) signal (green) was located in the vicinity of the actin staining (red) at the membrane. (ZIP 10MB)
DOI: 10.6084/m9.figshare.10040480.v1
title: Additional file 11: of Tau phosphorylation regulates the interaction between BIN1â s SH3 domain and Tauâ s proline-rich domain

description: A movie showing 3D images processed with Imaris software. The PLA (BIN1/total Tau) signal (green) was located in the vicinity of the actin staining (red) at the membrane. (ZIP 10MB)
DOI: 10.5281/zenodo.3987400
title: Raw Project Data Set: Uncovering the Hidden Dangers:Finding Unsafe Go Code in the Wild

description: Raw project source code data from Git used to create our data set for our paper "Uncovering the Hidden Dangers: Finding Unsafe Go Code in the Wild". For more information, please read the README.md file and check out our data set repository at https://github.com/stg-tud/unsafe_go_study_results
DOI: 10.6084/m9.figshare.10040372
title: MOESM3 of EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

description: Additional file 3: FASTA-formatted file containing EMIRGE-reconstructed sequences from the natural microbial community. (FASTA 16 KB)
DOI: 10.6084/m9.figshare.10040366
title: MOESM2 of EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

description: Additional file 2: FASTA-formatted file containing EMIRGE-reconstructed sequences from the complex simulated microbial community. (FASTA 35 KB)
DOI: 10.6084/m9.figshare.10040372.v1
title: MOESM3 of EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

description: Additional file 3: FASTA-formatted file containing EMIRGE-reconstructed sequences from the natural microbial community. (FASTA 16 KB)
DOI: 10.6084/m9.figshare.10040363
title: MOESM1 of EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

description: Additional file 1: FASTA formatted file containing EMIRGE-reconstructed sequences from the simple simulated microbial community. (FASTA 14 KB)
DOI: 10.6084/m9.figshare.10040363.v1
title: MOESM1 of EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

description: Additional file 1: FASTA formatted file containing EMIRGE-reconstructed sequences from the simple simulated microbial community. (FASTA 14 KB)
DOI: 10.6084/m9.figshare.10040366.v1
title: MOESM2 of EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

description: Additional file 2: FASTA-formatted file containing EMIRGE-reconstructed sequences from the complex simulated microbial community. (FASTA 35 KB)
DOI: 10.6084/m9.figshare.10040339
title: of EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

description: of EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
DOI: 10.6084/m9.figshare.10040336
title: of EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

description: of EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
DOI: 10.6084/m9.figshare.10040333
title: of EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

description: of EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
DOI: 10.6084/m9.figshare.10040336.v1
title: of EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

description: of EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
DOI: 10.6084/m9.figshare.10040339.v1
title: of EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

description: of EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
DOI: 10.6084/m9.figshare.10040333.v1
title: of EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

description: of EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
DOI: 10.6084/m9.figshare.10040231
title: MOESM5 of A developing Setaria viridis internode: an experimental system for the study of biomass generation in a C4 model species

description: Additional file 5. Mapman pathway file. A Mapman pathway file that maps relevant genes onto the image in Additional file 4.
DOI: 10.6084/m9.figshare.10040231.v1
title: MOESM5 of A developing Setaria viridis internode: an experimental system for the study of biomass generation in a C4 model species

description: Additional file 5. Mapman pathway file. A Mapman pathway file that maps relevant genes onto the image in Additional file 4.
DOI: 10.6084/m9.figshare.10040225
title: MOESM3 of A developing Setaria viridis internode: an experimental system for the study of biomass generation in a C4 model species

description: Additional file 3. Updated Mapman mapping file. A mapping file that can be imported into Mapman containing some manual annotations that were used for this manuscript.
DOI: 10.6084/m9.figshare.10040219
title: MOESM2 of A developing Setaria viridis internode: an experimental system for the study of biomass generation in a C4 model species

description: Additional file 2. RNAseq data. A spreadsheet containing FPKM, log2 fold change, Mapman bin numbers, and gene annotations for the RNAseq data generated for this manuscript.
DOI: 10.6084/m9.figshare.10040219.v1
title: MOESM2 of A developing Setaria viridis internode: an experimental system for the study of biomass generation in a C4 model species

description: Additional file 2. RNAseq data. A spreadsheet containing FPKM, log2 fold change, Mapman bin numbers, and gene annotations for the RNAseq data generated for this manuscript.
DOI: 10.5281/zenodo.4001653
title: Ultraviolet photodissociation for non-target screening based identification of organic micro-pollutants in water samples

description: Raw LC-HRMS data that was used for demonstrating the the use of the fragmentation technique ultraviolet photodissociation (UVPD) for the structural elucidation of organic micropollutants (OMPs) in water samples in combination with the 'uvpd' R-package (https://github.com/cpanse/uvpd/). The dataset consists of HCD and UVPD fragmentation data of reference standard samples acquired at various collision energies and reaction times, respectively. The analyses were performed with a Vanquish Horizon UHPLC system coupled to an Orbitrap Fusion Lumos Tribrid instrument with positive and negative ESI ionization. More analytical details are in Panse et al., Molecules, submitted.
DOI: 10.6084/m9.figshare.10040225.v1
title: MOESM3 of A developing Setaria viridis internode: an experimental system for the study of biomass generation in a C4 model species

description: Additional file 3. Updated Mapman mapping file. A mapping file that can be imported into Mapman containing some manual annotations that were used for this manuscript.
DOI: 10.5281/zenodo.4001652
title: Ultraviolet photodissociation for non-target screening based identification of organic micro-pollutants in water samples

description: Raw LC-HRMS data that was used for demonstrating the the use of the fragmentation technique ultraviolet photodissociation (UVPD) for the structural elucidation of organic micropollutants (OMPs) in water samples in combination with the 'uvpd' R-package (https://github.com/cpanse/uvpd/). The dataset consists of HCD and UVPD fragmentation data of reference standard samples acquired at various collision energies and reaction times, respectively. The analyses were performed with a Vanquish Horizon UHPLC system coupled to an Orbitrap Fusion Lumos Tribrid instrument with positive and negative ESI ionization. More analytical details are in Panse et al., Molecules, submitted.
DOI: 10.6084/m9.figshare.10040198
title: MOESM7 of Hospital-derived antibody profiles of malaria patients in Southwest India

description: Additional file 7. Scatter plots for antibody breadth in patients.
DOI: 10.6084/m9.figshare.10040189
title: MOESM4 of Hospital-derived antibody profiles of malaria patients in Southwest India

description: Additional file 4. Details of cross-reactive P. falciparum and P. vivax antigens.
DOI: 10.6084/m9.figshare.10040192
title: MOESM5 of Hospital-derived antibody profiles of malaria patients in Southwest India

description: Additional file 5. Data for orthology and synteny.
DOI: 10.6084/m9.figshare.10040192.v1
title: MOESM5 of Hospital-derived antibody profiles of malaria patients in Southwest India

description: Additional file 5. Data for orthology and synteny.
DOI: 10.6084/m9.figshare.10040198.v1
title: MOESM7 of Hospital-derived antibody profiles of malaria patients in Southwest India

description: Additional file 7. Scatter plots for antibody breadth in patients.
DOI: 10.6084/m9.figshare.10040180
title: MOESM1 of Hospital-derived antibody profiles of malaria patients in Southwest India

description: Additional file 1. Patient data for parasite density, hospitalization status and severity.
DOI: 10.6084/m9.figshare.10040183
title: MOESM2 of Hospital-derived antibody profiles of malaria patients in Southwest India

description: Additional file 2. Seroreactive P. falciparum and P. vivax antigens.
DOI: 10.6084/m9.figshare.10040189.v1
title: MOESM4 of Hospital-derived antibody profiles of malaria patients in Southwest India

description: Additional file 4. Details of cross-reactive P. falciparum and P. vivax antigens.
DOI: 10.6084/m9.figshare.10040180.v1
title: MOESM1 of Hospital-derived antibody profiles of malaria patients in Southwest India

description: Additional file 1. Patient data for parasite density, hospitalization status and severity.
DOI: 10.6084/m9.figshare.10040183.v1
title: MOESM2 of Hospital-derived antibody profiles of malaria patients in Southwest India

description: Additional file 2. Seroreactive P. falciparum and P. vivax antigens.
DOI: 10.6084/m9.figshare.10040138
title: MOESM2 of Initial high-resolution microscopic mapping of active and inactive regulatory sequences proves non-random 3D arrangements in chromatin domain clusters

description: Additional file 2. Overview of type, sequence location and open chromatin marks of TREs targeted by probe sets used in this study (fosmid pools 1 and 2; 6-kb probes 1 and 2). Data are based on [52]. For the segment covered by 6-kb probe 2, no TREs were identified in the used databases. Sequence coordinates represent the coordinates for hg38 after conversion of hg19 into hg38 by liftover. The used databases do not provide data on ‘open chromatin marks’ H3K9ac and H3K4me3 as additional indirect information for their state of activity at the respective loci in BJ1 cells. In the sheet ‘open chromatin marks,’ available data for IMR90 fibroblasts are shown instead. IMR90 cells show an almost identical DHS[+] profile to BJ1 cells ( www.roadmapepigenomics.org ); accordingly, similar epigenetic signatures between both cell lines can be assumed.