cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23719/1521265
title: The Role of Hepatic Vagal Tone in Ozone-induced Metabolic Dysfunction in the Liver

description: Air pollution has been associated with metabolic diseases and hepatic steatosis-like changes. We have shown that ozone alters liver gene expression for metabolic processes through neuroendocrine activation. This study aimed to further characterize ozone-induced changes and to determine the impact of hepatic vagotomy (HV) which reduces parasympathetic influence. Twelve-week-old male Wistar-Kyoto rats underwent HV or sham surgery five-six days prior to air or ozone exposure (0 or 1 ppm; 4 h/d for one or two days). Ozone-induced lung injury, hyperglycemia, glucose intolerance, circulating lipids and liver global mRNA expression were assessed. mRNA sequencing data are already made publicly available.
DOI: 10.23719/1522452
title: Ring Trial Data Results 

description: RT-qPCR is used world-wide to test and trace the spread of SARS-CoV-2. “Extraction-less” or “direct” RT-PCR is an open-access qualitative method for SARS-CoV-2 detection from nasopharyngeal (NP) samples with the potential to generate actionable data more quickly, at a lower cost, and with fewer experimental resources than full RT-qPCR. This study provides novel evidence in an international, inter-laboratory ring trial about the practical utility and performance of the direct RT-PCR method with participation by ten laboratories currently experiencing many of the testing limitations. The direct method should be considered as a viable, fit-for-purpose resource to address the growing need for population monitoring during a challenging vaccination roll out and amidst the emergence of increasingly transmissible strains of SARS-CoV-2.
DOI: 10.23719/1522925
title: CHEMICAL CHARACTERIZATION OF RECYCLED CONSUMER PRODUCTS USING SUSPECT SCREENING ANALYSIS

description: All data associated with Figures and Tables of manuscript "CHEMICAL CHARACTERIZATION OF RECYCLED CONSUMER PRODUCTS USING SUSPECT SCREENING ANALYSIS", Charles Lowe et al., Environmental Science and Technology, 2021.

Datasets are provided in a multisheet Excel file.  The first sheet in the file contains the Data Dictionary for all datasets.
DOI: 10.23719/1523021
title: Climate change, riverine flood risk and adaptation for the conterminous United States

description: Files contain:
1) expected annual damages summed by HUC10, for baseline climate and future climates of 1C-5C warmer than baseline, and 
2) expected annual damages due to adaptation based on benefit cost ratios of 1, 2, and 4, and net benefits of adaptation under each BCR scenario. Tabs are results for discount rates of 1, 3, and 6 (see text).
DOI: 10.23719/1523025
title: Cleaning against MHV dataset

description: efficacy data against MHV for cleaning surfaces
DOI: 10.23719/1523042
title: Environmental Fate of Cl-PFPECAs: Predicting the Formation of PFAS Transformation Products in New Jersey Soils

description: This file contains data from estimated chloro perfluoro polyether carboxylate (Cl-PFPECA) transformation products in soil samples collected in New Jersey by New Jersey state government personnel. Samples were originally processed and extracted in Athens, GA EPA/ORD/NERL/EMMD laboratory by Tom Jenkins and John Washington. Samples were analyzed for transformation products on the Waters LC-MS/MS instruments in Athens, GA EPA/ORD/CEMM/EPD laboratory by Marina Evich and John Washington. Instrument output was reviewed and optimized by Marina Evich and John Washington.
DOI: 10.23719/1523128
title: Figures and Tables Torres-Vazquez et al. 2021

description: This is a zip file with all data that were used to generate the figures and tables. The zip file contains a separate zip file for each figures/table. Each individual zip file has a README file that describe the figure/table datasets.
DOI: 10.23719/1523143
title: Targeted RNA-sequencing of aged FFPE liver tissue data

description: Gene expression data on >20 year-old, paired frozen and archival FFPE liver samples generated using targeted resequencing (TempO-Seq) and whole-genome RNA-sequencing methods. Samples were originally collected from male mice exposed to a reference chemical (dichloroacetic acid, DCA) at 0, 198, 313 and 427 mg/kg-day, (n=6/dose) by drinking water for 6 days.
DOI: 10.23719/1523354
title: Ozone Data / Dry Weight Data

description: Growth Response of Sixteen Species of Coniferous and Deciduous Tree Seedlings and Clones exposed to ozone. Contains both ozone and dry weight data for the following tree species: Black Cherry, Chestnut Oak, Douglas-fir, Eastern White Pine, Ponderosa Pine, Quaking Aspen, Red Alder, Red Maple, Sugar Maple, Sweetgum, Sycamore, Table Mountain Pine, Tulip Poplar, Virginia Pine, Winged Sumac, and Yellow Buckeye.
DOI: 10.23719/1523358
title: Dataset - Associations of Air Pollution and Pediatric Asthma in Cleveland, Ohio

description: EPA Positive Matrix Factorization (PMF) source profile results for fine and coarse particulate matter.  Inorganic fine and coarse particulate matter concentration data used in PMF models.
DOI: 10.23719/1523388
title: Data for children's soil and dust ingestion estimates using SHEDS-S/D model

description: These data are the inputs and variables needed to populate the SHEDS-S/D model to generate children's soil and dust ingestion estimates.
DOI: 10.23719/1524252
title: QTOF Analysis

description: QTOF analysis data
DOI: 10.23719/1524370
title: Projecting the Suicide Burden of Climate Change in the United States

description: Relevant datasets for "Projecting the Suicide Burden of Climate Change in the United States" (Belova et al.)
DOI: 10.23719/1524375
title: REFIT Data for ScienceHub-12.16.2021

description: This dataset contains data for a manuscript describing facemask's fitted filtration efficiency and material performance after repeated washing and wearing.
DOI: 10.23719/1524465
title: Corresponding Author Contact Information for Data in How Reactive is the Bromine in Bromochloramine (NHBrCl)? V1

description: Corresponding author information to request data.
DOI: 10.23719/1524526
title: Linking multi-media modeling with machine learning to assess and predict lake chlorophyll a concentrations

description: The datasets include hydrological parameters such as streamflow, soil moisture and water temperature, and meteorological data such as precipitation, max and min temperature, evaporation from 2002 to 2017 for  Lake Erie.
DOI: 10.23719/1524652
title: Live Cell Imaging of Oxidative Stress in Human Airway Epithelial Cells Exposed to Isoprene Hydroxy Hydroperoxide METADATA

description: Data corresponding to figures contained in manuscript
DOI: 10.23719/1524662
title: Bacterial and Viral Fecal Indicator Predictive Modeling Using Gradient Boosting at Three Great Lakes Recreational Beach Sites

description: Water quality measurements at 3 beach sites in the Great Lakes from the summer of 2015: Edgewater Beach, OH; Grant Park, WI; Washington Park, MI. Data include associated environmental parameters (meteorological and hydrologic). Microbial data include cultured fecal indicator bacteria, coliphage, and molecular marker (qPCR) measurements. Detailed description of data collection activities can be found in Wanjugi et al. 2018:
https://www.sciencedirect.com/science/article/pii/S004313541830349X
DOI: 10.23719/1524696
title: Bioaccessibility of Arsenic from Contaminated Soils and Alteration of the Gut Microbiome in an In Vitro Gastrointestinal Model

description: Microbiome analyses.
DOI: 10.23719/1524709
title: Sediment Data

description: EPA Data presented in the manuscript
DOI: 10.23719/1524715
title: Data for New Aerosol Dry Deposition Model

description: Fig1-needleleaf forest.txt contains all the observation data with each reference given for figure 1.  The deposition velocity vd and diameter dp are shown in ordered arrays.  vd_err and dp_err define the deposition velocity and diameter error bars.

Fig 2-needleleaf.txt contains same observation data as Fig1-needleleaf forest.txt

Fig3-Broadleaf forest.txt contains all the observation data with each reference given for broadleaf forests in Fig 3.  Data format same as Fig1

Fig4-Grasst.txt contains all the observation data with each reference given for grass in Fig 4.  Data format same as Fig1

Fig5.txt contains data from Zhang et al. 2014 for three different U* values

Fig6-Watert.txt contains all the observation data with each reference given for water in Fig 6.  Data format same as Fig1

DataFig7,TXT is a tab-deliminated text file containing the data in tabular for for Figure 7

DataFig8,TXT is a tab-deliminated text file containing the data in tabular for for Figure 8

Fig14a-133_P6p3_add_newadd_PM25_TOT_126719_boxplot_hourly_data.csv is a CSV file containing data for the hourly average median and 1st and 3rd quartiles of observation and two 1.33 km model runs that are represented by boxes in figure 14a.

Fig14b-12US1_P6p3_add_PM25_TOT_211556_boxplot_hourly_data.csvis a CSV file containing data for the hourly average median and 1st and 3rd quartiles of observation and two 12 km model runs that are represented by boxes in Figure 14b.

Fig15-133_P6p3_add_newadd_PM25_TOT_728997_spatialplot_diff.csv is a CSV file containing all the data for the bias and error for NEW and BASE 1.33 km model runs and the differences in bias and error between the models at AQS sites

Fig16-12US1_P6p3_add_PM25_TOT_971641_spatialplot_diff.csv  is a CSV file containing all the data for the bias and error for NEW and BASE 12 km model runs and the differences in bias and error between the models at AQS sites

Fig17-12US1_P6p3_add_PM25_TOT_104554_spatialplot_diff.csv is a CSV file containing all the data for the bias and error for NEW and BASE 12 km model runs and the differences in bias and error between the models at IMPROVE sites
DOI: 10.23719/1524755
title: Spatial and Temporal Variability in Stream Thermal Regime Drivers for Three River Networks During the Summer Growing Season

description: Many aquatic organisms adapted to cold-water habitats are suffering habitat losses and population declines during warm seasons when water temperatures are increasing above thermal tolerances. Therefore, identifying the mechanisms driving local and regional stream temperature regimes are useful for implementing targeted restoration and management activities at appropriate scales to help mitigate cold-water habitat loss. Controls on stream temperature vary across landscapes but also temporally within basins during ecologically important growing seasons. We developed a modeling process that identified statistical relationships between potential drivers of stream temperature and incorporated management-related covariates that could be adjusted as part of restoration planning scenarios. We tested this model development process in three river networks of the Pacific Northwest with pre-existing temperature total maximum daily loads for protecting cold-water habitat during three months of the growing season (May [start], August [warmest], and September [end]). When averaged across months and the three river networks, the covariates in our models with the highest relative importance represented the physical landscape (elevation [1st], catchment area [3rd], main channel slope [5th]) and temporally-variable climate covariates (mean monthly air temperature [2nd], and mean monthly discharge [4th]). Management-related covariates such as ground water use (6th) and riparian shade (7th) were of lesser but still significant relative importance. However, variation in the importance of covariates through time and among the river networks indicates that local nuances are important and should be addressed when planning restoration activities. The modeling process we developed demonstrated its ability to identify regional (similar across study areas) and local (unique to each study area) relationships among multiple drivers of stream temperature across complex landscapes. The data included provides the necessary inputs, code, and metadata for reproducing the models and output from this study.
DOI: 10.23719/1526061
title: River-cyanobacteria-datasets

description:  Sequence data are used for cyanobacterial community and toxic species analysis.
DOI: 10.23719/1526353
title: Interlaboratory Performance and Quantitative PCR Performance Benchmarks for NIST SRM® 2917 Monitoring qPCR Assays

description: qPCR assay interlaboratory measurements using NIST SRM 2917
DOI: 10.23719/1526378
title: Case study in 21st century ecotoxicology:  Using in vitro aromatase inhibition data to predict reproductive outcomes in fish, in vivo.

description: Data set includes empirical results from 60 h, 10 d, and 21 d exposures of female fathead minnows to the fungicide imazalil as well as simulations from predictive models anchored to an established adverse outcome pathway (https://aopwiki.org/aops/25). Contents are organized into multiple tabs:
(1) Simulated effects on plasma 17b-estradiol and vitellogenin used to inform experimental design. (2) Model simulations based on nominal concentrations used in the 60 h, 10 d, and 21 d exposures. (3) Biological effects data from the 60 h experiment. (4) Analytical exposure verification from the 60 h experiment. (5) Biological effects data from the 10 d exposure. (6) Biological effects data from 21 d exposure. (7) Analytical exposure verification from the 10 d and 21 d exposures. (8) Reproduction data from the 10 d and 21 d exposures. (9) Simulated reproduction results based on nominal exposure concentrations used in the 10 d and 21 d exposures. (10) Histopathology evaluations for selected females from the 10 d and 21 d exposures.
DOI: 10.23719/1527804
title: SARS-CoV-2 Disinfection Manuscript Data - Task 4A

description: Testing data, efficacy evaluations (recovery, log10 reductions, tissue culture assay results, etc). Common disinfectants were evaluated for efficacy against SARS-CoV-2 on common surfaces.
DOI: 10.23719/1527859
title: Evaluation of Two Methods for Detection of Viable Bacillus anthracis Simulant Spores in Maritime Environmental Samples

description: This is a manuscript for a peer-reviewed journal publication of some of the data of the project on “Evaluation of Analytical Methods for Detection of Bacillus anthracis Surrogate Spores: Compatibility with Real-World Maritime Environmental Samples Collected from the U.S. Coast Guard (USCG) Assets and Facilities”, executed under the Department of Homeland Security (DHS) funded Analysis for Coastal Operational Resiliency (AnCOR) program to help the USCG in their efforts to be better prepared to respond to bioterrorism incidents. The manuscript presents the data on the evaluation of performance of the traditional culture (TC) and the rapid viability-polymerase chain reaction (RV-PCR) methods for compatibility with detection of spores of Bacillus thuringiensis subspecies kurstaki (Btk), a surrogate for the anthrax causing Bacillus anthracis, in maritime environmental surface and grab samples. Employing the commonly used surface sampling tools such as Sponge-Sticks and vacuum filter cassettes, samples containing background materials were collected from the response boat-small, response boat-medium, navigation computer screens on these boats, pier concrete, and wood surfaces at the USCG base in Portsmouth, VA. Also collected were grab samples (e.g., grass, gravel, boat wash-water). These samples were spiked in the laboratory with the spores of Bacillus thuringiensis which is commonly used as a surrogate for Bacillus anthracis. The spiked samples were then processed to recover spores and analyzed by the two analytical methods. The performance of these methods was compared and is described in this manuscript.
DOI: 10.23719/1528284
title:  Summary dataset for habitat modeling manuscript published in STOTEN 2022

description:  Summary dataset for habitat modeling manuscript published in STOTEN 2022
DOI: 10.23719/1528334
title: Verification of in vivo estrogenic activity for four per- and polyfluoroalkyl substances (PFAS) identified as estrogen receptor agonists via new approach methodologies (v4)

description: The dataset includes data from six experiments in which adult male fathead minnows were exposed to five concentrations of a per- or polyfluorinated alkyl substance (PFAS) and a 17beta-estradiol positive control for 96 hours. Meta data on each fish exposed including treatment, replicate, sex, whole body wet weight, and gonad weights are included. Endpoints measured include nuptial tubercle scores, gonadosomatic index, and hepatic expression of four estrogen regulated mRNA transcripts:  vitellogenin, estrogen receptor alpha, apolipoprotein eb, and insulin-like growth factor 1. The data set also includes water quality data collected over the course of each exposure, and measured concentrations of the test chemicals in water and plasma. The PFAS tested include: Perfluorooctanoic acid; 1H,1H,8H,8H-Perfluorooctane-1,8-diol; 1H,1H,10H,10H-Perfluorodecane-1,10-diol; 1H,1H,8H,8H-Perfluoro-3,6-dioxaoctane-1,8-diol; and Perfluoro-2-methyl-3-oxahexanoic acid.
DOI: 10.23719/1528362
title: Data used in the manuscript "An Analysis of CMAQ Gas Phase Dry Deposition over North America Through Grid-Scale and Land-Use Specific Diagnostics in the Context of AQMEII4"

description: This dataset contains the data used to generate the figures in the manuscript "An Analysis of CMAQ Gas Phase Dry Deposition over North America Through Grid-Scale and Land-Use Specific Diagnostics in the Context of AQMEII4". It also contains the data used to generate teh figures in the supplemental material.
DOI: 10.23719/1528443
title: Part 2_Stabilization and Containment Dataset

description: Data corresponding to graphs and some tables paper.
DOI: 10.23719/1528499
title: Phtoplankton_qPCR_Dataset

description:  The dataset including qPCR, phytoplankton counts and water quality parameters are used for the evaluation of phytoplankton identification and quantification and assessment of eutrophication.
DOI: 10.23719/1528511
title: Data for Figure 2: Peak areas of fluorinated features detected with nontargeted analysis of OTM-45 extracts

description: This dataset contains data from nontargeted analysis of the OTM-45 extracts obtained during the incineration of PFAS containing AFFF. The data was used to create Figure 2 in the associated manuscript. The Figure uses the sums of the peak areas to create a bar graph show relative peak areas of fluorinated features for each of the incineration conditions studied. The peak areas for the features identified as PFAS that are targeted for typical analyses were plotted along with the total areas to show how many of the features fall outside of typical PFAS analyses.
DOI: 10.23719/1528541
title: Input-Output Data Sets Used in the Evaluation of the Two-Layer Soil Moisture and Flux Model  

description: The Excel file contains the model input-out data sets that where used to evaluate the two-layer soil moisture and flux dynamics model. The model is original and was developed by Dr. Hantush by integrating the well-known Richards equation over the root layer and the lower vadose zone. The input-output data are used for: 1) the numerical scheme verification by comparison against HYDRUS model as a benchmark; 2) model validation by comparison against real site data; and 3) for the estimation of model predictive uncertainty and sources of modeling errors.
DOI: 10.23719/1528553
title: Metal composition of particle emissions from 3D printing

description: Data used to generate Table 2 and 3 in the manuscript Metal compositions of particle emissions from material extrusion 3D
printing: Emission sources and indoor exposure modeling, https://doi.org/10.1016/j.scitotenv.2022.160512
DOI: 10.23719/1528789
title: Salt incubation data - Galella 2023 - Frontiers

description: Subset of data from an experimental salt incubation
DOI: 10.23719/1529102
title: Dataset for 'Development of a bioprinter-based method for incorporating metabolic competence into high-throughput in vitro assays' 

description: Data for Hopperstad K and Deisenroth C (2023) Development of a bioprinter-based method for incorporating metabolic competence into high-throughput in vitro assays. Front. Toxicol. 5:1196245. doi: 10.3389/ftox.2023.1196245. PMC10192685.
DOI: 10.23719/1529104
title: Datasets for "Early microRNA responses in rodent liver mediated by furan exposure establish dose thresholds for later adverse outcomes" manuscript

description: These data are associated with the figures and tables presented in the manuscript "Early microRNA responses in rodent liver mediated by furan exposure establish dose thresholds for later adverse outcomes". Each spreadsheet contains the data for each Figure and metadata describes each column and/or row of data.

For access to the smallRNA-seq files, please follow link provided and supply the reviewer key code "mjsnewymzlollmz".
DOI: 10.23719/1529105
title: Phosphate VOC study PFAS breakthrough and modeling data

description: Time series breakthrough data for PFAS on pilot systems compared to model predictions.
DOI: 10.23719/1529443
title: The benthic food web connects the estuarine habitat mosaic to adjacent ecosystems

description: Supplementary data for "Ester Dias, Pedro Morais, Carlos Antunes, Joel C. Hoffman, The benthic food web connects the estuarine habitat mosaic to adjacent ecosystems, Food Webs, Volume 35, 2023, e00282, ISSN 2352-2496, https://doi.org/10.1016/j.fooweb.2023.e00282."
DOI: 10.23719/1529545
title: LP Manuscript CFU Data final

description: Reported average CFU/lung based on bacterial enumeration of homogenized lungs.
DOI: 10.23719/1529860
title: Surface Sampling for Non-Spore-Forming Bacteria Manuscript Dataset 2023

description: Recovery Data for non-spore-forming bacteria, used as surrogates for select agents in surface sampling laboratory tests. Three surface sampling devices (3M sponge stick, LabPlas Sani-stick, and Solar Cult sponge, were used to attempt collection of E. coli, Y. ruckerii, and S. marcescens on Glass, ABS Plastic, and Stainless Steel. These data are useful for selection of surface sampling methods following a contamination incident.
DOI: 10.23719/1529907
title: A U.S. Lead Exposure Hotspots Analysis  

description: This is the dataset used for the U.S. lead exposure risk hotspot analysis.   The data dictionary explains the files in the zip file, which are ESRI ArcGIS files.  Although the zip file is labeled Figures 1 and 2, it contains the data for the supplemental figures in Supplement A, as well as the data for all of the tables.  Supplement B data is included in the separate excel file.
DOI: 10.23719/1529948
title: Review of per- and polyfluoroalkyl substances (PFAS) bioaccumulation in earthworms

description: Supplementary materials for "Lawrence P. Burkhard, Lauren K. Votava, Review of per- and polyfluoroalkyl substances (PFAS) bioaccumulation in earthworms, Environmental Advances, Volume 11, 2023, 100335, ISSN 2666-7657, https://doi.org/10.1016/j.envadv.2022.100335."