cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3546879.v1
title: Appendix A. Candidate set of 24 a priori models used to examine the effects of sex, year, and a trend in survival with time since white-nose syndrome (WNS) arrival on little brown bats (Myotis lucifugus) at Hibernia Mine, Rockaway, New Jersey, USA, 2010–2013.

description: Candidate set of 24 a priori models used to examine the effects of sex, year, and a trend in survival with time since white-nose syndrome (WNS) arrival on little brown bats (Myotis lucifugus) at Hibernia Mine, Rockaway, New Jersey, USA, 2010–2013.
DOI: 10.3535/hfk-pzj-en2
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lkd-ay8-32y
title: Pterygotus osiliensis Schmidt

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24805224.v1
title: table with complete output from outlier detection analysis

description: table with complete output from outlier detection analysis
DOI: 10.6084/m9.figshare.26510614.v1
title: Effects of moss restoration on soil erosion and soil water content in a temperate vineyard

description: The study took place in a vineyard south of Fellbach, which is situated in southwestern Germany, approximately 10 km northeast of Stuttgart. We set up three treatments under the vines: moss restoration (moss), bare soil (bare), and cover crops (grass), each with four replicates. The bare treatment was set up by completely weeding the soil. The grass treatment utilizes the existing planted cover crops without additional preparation. The moss treatment uses artificially grown moss mats with a mixture of mosses.To analyse the effect of moss restoration on soil erosion and soil water content, three rainfall simulations were conducted at three measurement times: April 13-14, June 14-15, and October 24-25, 2022. Surface runoff and sediment discharge were measured using micro-scale runoff plots (ROPs, 40 x 40 cm) for each treatment. The Tübingen rainfall simulator, modified with a pavilion for wind protection and an adjusted fall height of 2 meters, was used. It featured a Lechler 490.808.30.CE nozzle set to a rainfall intensity of 45 mm h<sup>-1</sup> for 30 minutes [dataset_erosion_vineyard].Soil water content was measured with biocrust wetness probes (BWP) from UP GmbH, Cottbus, Germany for each rainfall simulation in the upper 5 mm of the soil surface underneath the respective vegetation. BWPs measure electrical conductivity, which was temperature-corrected and calibrated to a gravimetric water content (g g<sup>-1</sup>) [dataset_soilwatercontent_vineyard].<br>
DOI: 10.6084/m9.figshare.27102847.v1
title: EU stream ecological quality time series

description: These data encompass 1,797 ecological quality (EQR and EQC) time series collected across Europe. Most of this data was published in Sinclair et al. 2024 (doi.org/10.1038/s41559-023-02305-4). For detailed information on how to use these data, please refer to the usage notes.
DOI: 10.17632/bxsm39hsc9
title: Training and Validation Dataset for the Development of Improved Proxy Measures of State-level Household Gun Ownership

description: This dataset is comprised of a single response variable: state-level estimates of household gun ownership from the Behavior Risk Factor Surveillance System (BRFSS) surveys, averaged over years 2001-2002; and two covariates: (1) FS/S and (2) state-level hunting license rates (HLR). Sheet 1 contains the training data; sheet 2 contains the BFRSS data used for validation.
DOI: 10.3535/8ra-vwm-dpe
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gzg-hpv-76v
title: †Asaphus (Neoasaphus) latus (Pander, 1930)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1136081_d290
title: Ex14R58 DAPI-1 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.14555776.v2
title: The RNA structurome in the asexual blood stages of malaria pathogen <i>plasmodium falciparum</i>

description: <i>Plasmodium falciparum</i> is a deadly human pathogen responsible for the devastating disease called malaria. In this study, we measured the differential accumulation of RNA secondary structures in coding and non-coding transcripts from the asexual developmental cycle in <i>P. falciparum</i> in human red blood cells. Our comprehensive analysis that combined high-throughput nuclease mapping of RNA structures by duplex RNA-seq, SHAPE-directed RNA structure validation, immunoaffinity purification and characterization of antisense RNAs collectively measured differentially base-paired RNA regions throughout the parasite’s asexual RBC cycle. Our mapping data not only aligned to a diverse pool of RNAs with known structures but also enabled us to identify new structural RNA regions in the malaria genome. On average, approximately 71% of the genes with secondary structures are found to be protein coding mRNAs. The mapping pattern of these base-paired RNAs corresponded to all regions of mRNAs, including the 5ʹ UTR, CDS and 3ʹ UTR as well as the start and stop codons. Histone family genes which are known to form secondary structures in their mRNAs and transcripts from genes which are important for transcriptional and post-transcriptional control, such as the unique plant-like transcription factor family, <i>ApiAP2</i>, DNA-/RNA-binding protein, <i>Alba3</i> and proteins important for RBC invasion and malaria cytoadherence also showed strong accumulation of duplex RNA reads in various asexual stages in <i>P. falciparum</i>. Intriguingly, our study determined stage-specific, dynamic relationships between mRNA structural contents and translation efficiency in <i>P. falciparum</i> asexual blood stages, suggesting an essential role of RNA structural changes in malaria gene expression programs.
 <b>Abbreviations</b>: CDS: Coding Sequence; DNA: Deoxyribonucleic Acid; dsRNA: double-stranded RNA; IDC: Intra-erythrocytic Developmental Cycle (IDC); m6A: N6-methyladenosine; mRNA: Messenger RNA; ncRNA: Non-coding RNA; RBC: Red Blood cells; RBP: RNA-Binding Protein; REC: Relative Expression Counts; RNA-seq: RNA-sequencing; RNA: Ribonucleic Acid; RNP: Ribonucleoprotein; RPKM: Reads Per Kilobase of transcript Per Million; rRNA: Ribosomal RNA 16. RUFs: RNAs of Unknown Function; SHAPE: Selective 2’-hydroxyl acylation analysed by primer extension; snoRNA: Small Nucleolar RNA; snRNA: Small Nuclear RNA; SRP-RNA: Signal Recognition Particle RNA; ssRNA: (Single-stranded RNA); TE: Translation Efficiency; tRNA: transfer RNA; UTR: Untranslated Region
DOI: 10.6084/m9.figshare.22032020.v2
title: [Datasets] Virtual monochromatic imaging with projection-based material decomposition algorithm for metal artifacts reduction in photon-counting detector computed tomography

description: The simulated and experimental datasets for the paper "Virtual monochromatic imaging with projection-based material decomposition algorithm for metal artifacts reduction in photon-counting detector computed tomography".
DOI: 10.6084/m9.figshare.28157327.v1
title: HIV/AIDS-related stigma

description: HIV/AIDS-related stigma
DOI: 10.17632/9cyp4s22mc
title: Open source anaerobic and temperature-controlled in vitro model enabling real-time release studies with live bacteria

description: Design files, 3D printing files, laser cutting files and operation videos for Hardware X article.
Abstract: 
In vitro release and dissolution models are widely used in the development phases of oral drug delivery systems to measure how an active pharmaceutical ingredient (API) is released from a dosage form. However, additional requirements for these models arise when evaluating probiotic dosage forms since they are often sensitive to temperature and oxygen levels. As a solution to this, we propose a custom-designed anaerobic in vitro release setup, made mainly by 3D printing and laser cutting, to function together with state-of-the-art pharmaceutical dissolution equipment – in this case, a microDISS Profiler™. The in vitro release model makes it possible to study the release rate of oxygen-sensitive probiotics in simulated intestinal conditions, while ensuring their survival due to the anaerobic conditions. This has not been possible so far since the available in vitro dissolution models have not been compatible with anaerobic conditions. With two different case studies, the developed model combined with a microDISS Profiler™ has proven capable of measuring the release of a probiotic and a small-molecule API from microdevices for oral drug delivery. Further, the model facilitated the survival of anaerobic bacteria present in the release medium.
DOI: 10.3535/6pg-gk3-gpm
title: Agate

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21708593.v1
title: Emotional Stroop Task - English Version

description: The Emotional Stroop is an experimental task created by Williams, Mathews, and MacLeod (1996) that is based on Stroop's original Stroop task (1935). Individuals were asked to identify the color of the words an emotional or a neutral word shown in a different color without paying attention to the meaning of the word in this test. Individuals display an attentional bias towards emotional words when they take longer to name the color of the letters of an emotional stimulus than a neutral stimulus, a phenomenon known as the interference effect. In determining the words used in the Emotional Stroop Task, this study referred to the CEFI (Concreteness, Emotion, and Subjective Frequency Norms for Indonesian Words) database by Sianipar, van Groenestijn, and Dijkstra (2016). Our word stimuli were selected based on three dimensions: familiarity, valence, and arousal. The experimental stimulus words were chosen by calculating the mean of each word and finding the cut-off point for each dimension in splitting the words into three groups (positive, negative, and neutral words). The cut-off point is determined as a control so that each word category has an equivalent dimension value. For each word utilized as a stimulus in the experiment, this study established the cut-off point for mean familiarity in the range of 4.00-7.39. The valence mean used in this study were &gt;5.5 for positive words, &lt;4 for negative words, and 4.5 &lt; x &lt; 5.0 for neutral words. Finally, in calculating the arousal mean, emotional words must have a greater arousal value than neutral words. Therefore, while positive and negative words have a mean arousal of 5.72 and 5.71 (p &gt; .05), the neutral words have a mean arousal of 4.34 (all ps &lt; .05). In this experiment, the stimuli comprised 120 words, with 40 words in each dimension, namely positive, negative, and neutral words. The words were then randomly assigned to four blocks in the experiment. The Emotional Stroop Task is carried out online and created using the OpenSesame software version 3.3.10 and uploaded on the Mind Probe platform (https://jatos.mindprobe.eu/jatos).
DOI: 10.6084/m9.figshare.24686820.v1
title: Dengue Serotype and Genotype 2019 Dhaka outbreak

description: Background: Acute arboviral infections like dengue have a significant negative socioeconomic and health impact on many tropical and subtropical areas of the world. 3.9 billion Individuals are at risk of contracting the dengue virus, with Asia bearing the brunt of that load. Bangladesh, like other south-east Asian countries faced a massive outbreak of dengue in 2019. The purpose of this study was to describe the clinical and laboratory variations among severe dengue cases and to conduct a serotype survey and forecast future changes in the clinical or serological profile of this virus. Methods: This cross sectional study was done in three tertiary care centers in Dhaka, Bangladesh during the worst outbreak of dengue in this hyperendemic region spanning from 1st August to 31st December, 2019. The study enrolled 1978 participants who were grouped into group B and C according to national guidelines. Thus, the clinical and laboratory difference between these two groups are described. Furthermore, 81 samples were serotyped using Qiagen One step RT-PCR kit (Cat. No: 210212). In addition sequencing (ABI sequencing platform) of partial C-prM gene of five DENV-3 isolates were done and analyzed (BLAST tool of NCBI) for phylogenetics (MEGA6 software package Results: Among the 1978 enrolled participants group B and C patients were 1580 (80%) and 398 (20%) respectively. The median (IQR) age of the patients were 26(11 to 41). Maximum proportion of the enrolled were male (72.2%) (p=0.0002). Median (IQR) of the cohort was 26(11 to 41). Only 5.56% were secondary infections. Group C patients more commonly presented with vomiting (p 0.133), diarrhea (p&lt;0.0001) and abdominal pain (p 0.0203). Most common co- morbidities were hypertension (90; 4.55%) and DM (70; 3.54%). The major mode of bleeding was melaena (12%). Only 13 (0.66%) patients succumbed to death, 12 of them belonged to group B. Hemoglobin and hematocrit was lower in group C cases (p 0.004 and 0.006 respectively). Aspartate transaminase was higher in the same group (p 0.0016). Fluid requirement was higher in group C (p&lt;0.0001) and platelet requirement was more in group B (0.0070). Only 12 (0.7%) required ICU. Only one patient got antibiotics and none were managed by steroids. Out of 81 samples 79% patients were serotyped as DENV-3, followed by DENV 2,3 (13.6% ) and DENV-2 (7.4%). Following phylogenetic analysis DENV-3 and DENV2 were deemed to be of genotype I and cosmopolitan variety. Conclusions: This study presents the first instance of heterogeneous co-infection with several serotypes since 2000 in Bangladesh. It also gives an overview of serotype prevalence, management evaluation and clinical results that promises to navigate future control planning.
DOI: 10.6084/m9.figshare.28152722.v2
title: CONSORT Checklist and Study Flow Diagram - Comparing Competitive and Recreational Table Tennis Training: Impacts on Quality of life in Older Adults - A Randomized Controlled Trial

description: Due to its combination of speed, tactics and accuracy, table tennis is becoming one of the sport exercises that is suitable for the older adult. Casual play is fun and relaxing, and more serious table tennis might further skill development through focused practice. The randomized controlled trial (RCT) aimed to determine how the practice of competition compared to leisure playing affects the Quality of life (QoL) of people aged 40-70. Selecting subjects at random, one group of subjects undertook a structured competitive regimen while the other group was given time to play recreationally without any structured competition. QoL was measured before and after the intervention using WHOQOL-BREF, measuring their physical, psychological, social, and environmental domains. Data were analyzed using paired and independent t-tests. The group which received structured competition reported a marked improvement in their QoL indicators especially in physical health (p &lt; 0.001), psychological health (p &lt; 0.001), social relationships (p = 0.001) when compared to the control group that was not structured which showed few improvements. No significant differences were observed in the environmental domain for either group.
DOI: 10.17632/rmzzbs2dcx
title: The Chain Mediation Effect of Performance Expectancy and Perceived Value between College Students’ Perceived Social Influence and Usage Intention towards AI Language Partners

description: The Chain Mediation Effect of Performance Expectancy and Perceived Value between College Students’ Perceived Social Influence and Usage Intention towards AI Language Partners
DOI: 10.3535/3kb-3dg-4rg
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w0r-24p-b18
title: Platinum

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13720525.v2
title: LUAD_GSE40419_paired

description: APA in LUAD
DOI: 10.6084/m9.figshare.1560064.v1
title: Sampling plant populations and communities with quadrats

description: The data was collected on Thursday, September 24, 2015 at approximately 3:00pm. The location was at the Danby Woodlot on the grassland area at York University – Keele Campus. The weather at the time of collecting data was sunny and roughly 24 degrees Celsius. The time allocated for this dataset was 40 minutes but it only took about 25 minutes to complete and record this data. The collection of data was done in a group of four, which included – Vivian Do, Amandeep Bains, Stephanie Achaiya, and Alexander Karakatganis. To collect the data, 1m x 1m quadrats were randomly placed on the grassland. When the quadrats were placed onto the grassland, the number of plants within the quadrat was quickly counted, followed by a count of the number of different species within that quadrat. A quick eye count was performed for both. Next, the total percentage cover of all vegetation as well as the total percentage cover of grasses within that same quadrat plot was estimated. This was repeated until 20 quadrat plots were sampled and the data was recorded. The purpose of this dataset was to find correlations between the variables being studied using quadrats as a sampling technique.
DOI: 10.6084/m9.figshare.27105808.v1
title: Brain fMRI data comparing pain responses to noxious heat in healthy controls (HC) for comparison with fibromyalgia syndrome (FMS)

description: Functional MRI data from a group of healthy females as control group for comparison with females with fibromyalgia syndrome (FMS) in a separate data set. The data and method are described in Warren et al. Medical Research Archives, 2024, https://doi.org/10.18103/mra.v12i3.5206 . Data are original (unprocessed) in NIfTI format, with multiple runs per participant, and are organized by participant. The data structure and corresponding behavioral data, and the stimulation paradigm, are defined in an Excel file. The structure of the database file (Excel file) are in the form used with the Pantheon analysis software. Pantheon is available on GitHub ( https://github.com/stromanp/pantheon-fMRI )
DOI: 10.17632/ms52ym7vcn
title: EPAW-1.0 code for evolutionary optimization of PAW datasets especially for high-pressure applications

description: We present a bio-inspired stochastic optimization strategy that optimizes projector augmented wave (PAW) datasets, for a user-specified pressure range, to realize the highest possible accuracy in high-throughput density functional theory calculations within the framework of PAW method. We named the optimizer “Evolutionary Generator of projector augmented wave datasets” (EPAW-1.0). The self-learning evolutionary algorithms in EPAW-1.0 adaptively tune some of the PAW parameters (such as different radii, and reference energies) to generate evolutionary optimized PAW (EPAW) datasets. In the course of designing EPAW dataset with a specific pseudo partial waves and projectors generation scheme, the code keeps the user-specified electronic configuration unaltered and the augmentation radius (r_c) on the verge of the user allowed maximum without resulting in sphere overlap. The EPAW-1.0 algorithm homes on to a soft, transferable and unified EPAW dataset using various measures including the equation of state (EoS) of standard elemental materials within a user-specified pressure range that allows probing ~50% volume compression with respect to the equilibrium atomic volume (corresponding to the energy minimum). The measures used by the EPAW algorithm also can be used to balance the efficiency and accuracy of the dataset.
DOI: 10.3535/b2f-gah-gp1
title: †Strophomenida Öpik, 1934

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dq3-pdn-wsj
title: Illaenus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.6275288.v1
title: Systematic_Review_Library.enl

description: EndNote database of a systematic review on the educational impact of mini-clinical evaluation exercise (Mini-CEX) and direct observation of procedural skills (DOPS) and its association with implementation
DOI: 10.3535/dn3-we2-vkd
title: Mastopora C.E.I. von Eichwald, 1840

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/x7n-514-4ey
title: Salopochitina filifera

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3vz-zd0-ndd
title: Eisenackitina dolioliformis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/x7t-z0s-m4d
title: Cyclocrinites C.E.I. von Eichwald, 1840

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19551439.v1
title: test mask

description: Reactome test mask file
DOI: 10.17632/sdf3cvyr6g
title: PENGARUH TINGKAT KEMISKINAN, KONTRIBUSI PDRB SEKTOR JASA PENDIDIKAN DAN KESEHATAN TERHADAP INDEKS PEMBANGUNAN MANUSIA KABUPATEN/KOTA DI PROVINSI ACEH

description: Manusia memiliki peran yang sangat penting dalam pembangunan perekonomian negara. Salah
satu parameter keberhasilan pembangunan adalah Indeks Pembangunan Manusia (IPM). Penelitian ini
bertujuan untuk menganalisis faktor-faktor yang mempengaruhi IPM Kabupaten/kota di Provinsi Aceh
tahun 2010-2020. Metode analisis yang digunakan adalah analisis data panel dengan memilih di antara
3 model yaitu Common Effect, Fixed Effect dan Random Effect. Hasil penelitian ini menunjukkan bahwa
Angka IPM Provinsi Aceh tahun 2020 adalah 71,99 dan masuk dalam kategori angka IPM tinggi. Model
regresi data panel yang sesuai dengan angka IPM kabupaten/kota di Provinsi Aceh pada tahun 2010-
2020 adalah model random effect. Faktor-faktor yang mempengaruhi angka IPM kabupaten/kota di
Provinsi Aceh pada tahun 2010-2020 secara signifikan adalah angka kemiskinan dan kontribusi PDRB
sektor pendidikan. Sedangkan variabel kontribusi PDRB sektor kesehatan tidak signifikan.
DOI: 10.3535/ab7-dvl-a5e
title: Conochitina argillophila

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/f8h-1rq-ezq
title: Melanterite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n46-0nm-75c
title: Mastopora C.E.I. von Eichwald, 1840

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12073329.v1
title: Test NWB data

description: Test data in NWB format<br>
DOI: 10.6084/m9.figshare.14912313.v2
title: Appendix-I-and-II-Fig4pm-paper

description: These two appendices belong to a publication about feature generation for process mining event logs. A literature review and a list of all features that were extracted from the literature. Both documents are in PDF format.
DOI: 10.6084/m9.figshare.26531293.v1
title: Tab.xlsx

description: Contains measured signal intensities of the most affected muscle in thyroid eye disease, corresponding reference tissues and calculated relative signal intensities.
DOI: 10.6084/m9.figshare.7410887.v1
title: Data.xlsx

description: These data include soil respiration rate, root respiration rate, heterotrophic respiration rate, litter carbon release rate, soil microbial carbon and root biomass desity, which were under nitrogen addition in northeasten China.