cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13799846
title: PublicData

description: chdgene_table.csv -->



CHDgene list released 2024-04-05 

(https://chdgene.victorchang.edu.au/)

doi: 10.1161/CIRCGEN.121.003539


Cotney_CirRes_316709_online_table_v.xlsx -->



Gini index 2020-08-09 

(https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7554226/)

doi: 10.1161/CIRCRESAHA.120.316704


E-MTAB-6814.sdrf.txt -->



metadata on how to download mammalian organ development

doi: 10.1038/s41586-019-1338-5


LncBook_id_conversion.csv and LncBookv1.9_GENCODEv33_GRCh38.gtf.gz -->



lncbook 2.0 metadata on id conversion and gtf annotation file

https://ngdc.cncb.ac.cn/lncbook/ 

doi: 10.1093/nar/gkac999


lncExpDB_E-MTABGeneTPM.tsv -->



LncExpDB RNA-seq data

https://ngdc.cncb.ac.cn/lncexpdb/

doi: 10.1093/nar/gkaa850


RNACentral_ensembl.tsv and RNACentral_lncbook.tsv --> 



RNA central ensembl and lncbook identifiers

https://rnacentral.org/

https://doi.org/10.1093/nar/gkw1008


UCSC_hg19ToHg38.over.chain --> 



Liftover chain file from ucsc genome browser 

https://hgdownload.cse.ucsc.edu/goldenpath/hg19/liftOver/

DOI: 10.1093/nar/gkad987
DOI: 10.5281/zenodo.13799847
title: PublicData

description: chdgene_table.csv -->



CHDgene list released 2024-04-05 

(https://chdgene.victorchang.edu.au/)

doi: 10.1161/CIRCGEN.121.003539


Cotney_CirRes_316709_online_table_v.xlsx -->



Gini index 2020-08-09 

(https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7554226/)

doi: 10.1161/CIRCRESAHA.120.316704


E-MTAB-6814.sdrf.txt -->



metadata on how to download mammalian organ development

doi: 10.1038/s41586-019-1338-5


LncBook_id_conversion.csv and LncBookv1.9_GENCODEv33_GRCh38.gtf.gz -->



lncbook 2.0 metadata on id conversion and gtf annotation file

https://ngdc.cncb.ac.cn/lncbook/ 

doi: 10.1093/nar/gkac999


lncExpDB_E-MTABGeneTPM.tsv -->



LncExpDB RNA-seq data

https://ngdc.cncb.ac.cn/lncexpdb/

doi: 10.1093/nar/gkaa850


RNACentral_ensembl.tsv and RNACentral_lncbook.tsv --> 



RNA central ensembl and lncbook identifiers

https://rnacentral.org/

https://doi.org/10.1093/nar/gkw1008


UCSC_hg19ToHg38.over.chain --> 



Liftover chain file from ucsc genome browser 

https://hgdownload.cse.ucsc.edu/goldenpath/hg19/liftOver/

DOI: 10.1093/nar/gkad987
DOI: 10.6084/m9.figshare.16649698
title: Network: lter, Domain: niwot

description: MacroSheds timeseries data, shapefiles, and metadata for domain: niwot, within network: lter
DOI: 10.6084/m9.figshare.16649698.v2
title: Network: lter, Domain: niwot

description: MacroSheds timeseries data, shapefiles, and metadata for domain: niwot, within network: lter
DOI: 10.6084/m9.figshare.16649698.v1
title: Network: lter, Domain: niwot

description: MacroSheds timeseries data, shapefiles, and metadata for domain: niwot, within network: lter
DOI: 10.6084/m9.figshare.26207477
title: Functional Time Series Analysis and Visualization Based on Records

description: In many phenomena, data are collected on a large scale and at different frequencies. In this context, functional data analysis (FDA) has become an important statistical methodology for analyzing and modeling such data. The approach of FDA is to assume that data are continuous functions and that each continuous function is considered as a single observation. Thus, FDA deals with large-scale and complex data. However, visualization and exploratory data analysis, which are very important in practice, can be challenging due to the complexity of the continuous functions. Here we introduce a type of record concept for functional data, and we propose some nonparametric tools based on the record concept for functional data observed over time (functional time series). We study the properties of the trajectory of the number of record curves under different scenarios. Also, we propose a unit root test based on the number of records. The trajectory of the number of records over time and the unit root test can be used for visualization and exploratory data analysis. We illustrate the advantages of our proposal through a Monte Carlo simulation study. We also illustrate our method on two different datasets: Daily wind speed curves at Yanbu, Saudi Arabia and annual mortality rates in France. Overall, we can identify the type of functional time series being studied based on the number of record curves observed. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.26207477.v1
title: Functional Time Series Analysis and Visualization Based on Records

description: In many phenomena, data are collected on a large scale and at different frequencies. In this context, functional data analysis (FDA) has become an important statistical methodology for analyzing and modeling such data. The approach of FDA is to assume that data are continuous functions and that each continuous function is considered as a single observation. Thus, FDA deals with large-scale and complex data. However, visualization and exploratory data analysis, which are very important in practice, can be challenging due to the complexity of the continuous functions. Here we introduce a type of record concept for functional data, and we propose some nonparametric tools based on the record concept for functional data observed over time (functional time series). We study the properties of the trajectory of the number of record curves under different scenarios. Also, we propose a unit root test based on the number of records. The trajectory of the number of records over time and the unit root test can be used for visualization and exploratory data analysis. We illustrate the advantages of our proposal through a Monte Carlo simulation study. We also illustrate our method on two different datasets: Daily wind speed curves at Yanbu, Saudi Arabia and annual mortality rates in France. Overall, we can identify the type of functional time series being studied based on the number of record curves observed. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.16649701
title: Network: lter, Domain: plum

description: MacroSheds timeseries data, shapefiles, and metadata for domain: plum, within network: lter
DOI: 10.6084/m9.figshare.16649701.v2
title: Network: lter, Domain: plum

description: MacroSheds timeseries data, shapefiles, and metadata for domain: plum, within network: lter
DOI: 10.6084/m9.figshare.16649701.v1
title: Network: lter, Domain: plum

description: MacroSheds timeseries data, shapefiles, and metadata for domain: plum, within network: lter
DOI: 10.5281/zenodo.13799940
title: phrynobatrachus_minutus_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.13799941
title: phrynobatrachus_minutus_decontaminated_FSCR.fasta.gz
DOI: 10.6084/m9.figshare.16649704
title: Network: lter, Domain: santa_barbara

description: MacroSheds timeseries data, shapefiles, and metadata for domain: santa_barbara, within network: lter
DOI: 10.6084/m9.figshare.16649704.v1
title: Network: lter, Domain: santa_barbara

description: MacroSheds timeseries data, shapefiles, and metadata for domain: santa_barbara, within network: lter
DOI: 10.6084/m9.figshare.16649704.v2
title: Network: lter, Domain: santa_barbara

description: MacroSheds timeseries data, shapefiles, and metadata for domain: santa_barbara, within network: lter
DOI: 10.25345/c5rr1pz7h
title: MassIVE MSV000095908 - Global Mitochondrial Connectivity Landscape in Saccharomyces cerevisiae Reveals Novel Co-factors, Disease Networks, and Conserved Protein Communities
title: Mitochondria (mt) play pivotal roles in diverse cellular processes by orchestrating through macromolecular assemblies. Despite their significance, our understanding of mt protein complex membership remains incomplete. Here, we present a proteomic survey, employing affinity purification (AP) of 740 endogenously GFP-tagged mt proteins and biochemical co-fractionation (CF) of mt extracts isolated from yeast (Saccharomyces cerevisiae) grown on glycerol medium. Stably interacting mt proteins identified through mass spectrometry (MS) from these lysates revealed 13,716 high-quality associations and 556 heteromeric complexes, many of which were previously uncharacterized. These include novel mt factors engaged in coenzyme Q biosynthesis, membrane contact sites, phospholipid transport, and coordination with the MICOS complex for proper respiratory function. In addition to associating 353 mt assemblies with 196 candidate disease genes, a draft conservation map spanning 70,904 mt interactions across 271 sequenced genomes from all three domains of life highlighted preserved and divergent associations among evolutionarily distinct species. Predictions were validated independently by AP-MS or CF-MS experiments in various human cell lines and mouse brain tissues. Our analysis offers insights into mt biology, revealing unforeseen complexes and poorly characterized proteins, while portraying the molecular landscape of the mt interactome to enhance our understanding of human health and disease.
DOI: 10.6084/m9.figshare.27068272
title: Planejamento de busca bibliográfica

description: Planejamento de busca bibliográfica
DOI: 10.6084/m9.figshare.27068272.v1
title: Planejamento de busca bibliográfica

description: Planejamento de busca bibliográfica
DOI: 10.5281/zenodo.13799951
title: phrynobatrachus_natalensis_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.13799952
title: phrynobatrachus_natalensis_decontaminated_FSCR.fasta.gz
DOI: 10.15468/dl.f5fptf
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paraphlebia hyalina Brauer, 1871"
 ]
}

 The dataset includes 54 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023731-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n8xcgr
title: Occurrence Download

description: A dataset containing 1645 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is one of (United States of America, Canada, Mexico)",
 "Year is greater than or equal to 1990",
 "TaxonKey is Lithophragma glabrum Nutt. ex Torr. & A.Gray"
 ]
}

 The dataset includes 1645 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023729-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8p8uay
title: Occurrence Download

description: A dataset containing 10720 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crassostrea virginica (Gmelin, 1791)"
 ]
}

 The dataset includes 10720 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023728-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zgjmge
title: Occurrence Download

description: A dataset containing 459 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceratophrys calcarata Boulenger, 1890"
 ]
}

 The dataset includes 459 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023739-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bc7yqc
title: Occurrence Download

description: A dataset containing 7679 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ziziphus mauritiana Lam."
 ]
}

 The dataset includes 7679 records from 192 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0328007-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nuwy7i
title: Occurrence Download

description: A dataset containing 2047 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Akodon mollis Thomas, 1894"
 ]
}

 The dataset includes 2047 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001459-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dy2ans
title: Occurrence Download

description: A dataset containing 2098 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spartina maritima (Curtis) Fernald"
 ]
}

 The dataset includes 2098 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030296-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.98c77g
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Portulaca macbridei D.Legrand"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189099-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.95mmdt
title: Occurrence Download

description: A dataset containing 3319 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is COL.2_2",
 "TaxonKey is Colibri cyanotus (Bourcier, 1843)"
 ]
}

 The dataset includes 3319 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012010-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q6u6lo
title: Occurrence Download

description: A dataset containing 363 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caquetaia kraussii (Steindachner, 1878)"
 ]
}

 The dataset includes 363 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001460-150221044754056/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2spe7v
title: Occurrence Download

description: A dataset containing 49725 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Pteropus conspicillatus Gould, 1850",
 "TaxonKey is Pteropus scapulatus Peters, 1862",
 "TaxonKey is Pteropus poliocephalus Temminck, 1825",
 "TaxonKey is Pteropus alecto Temminck, 1837"
 ]
}

 The dataset includes 49725 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032661-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tnb274
title: Occurrence Download

description: A dataset containing 188836 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation)",
 "CoordinateUncertaintyInMeters 0.0-5000.0",
 "Country is France",
 "TaxonKey is Quercus robur L."
 ]
}

 The dataset includes 188836 records from 1166 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055056-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ppourc
title: Occurrence Download

description: A dataset containing 7649 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dicrurus macrocercus Vieillot, 1817"
 ]
}

 The dataset includes 7649 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001460-150316153013904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ufe2w
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Austrotinodes quintarellii"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0327989-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7qtsny
title: Occurrence Download

description: A dataset containing 129 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithocarpus craibianus Barnett"
 ]
}

 The dataset includes 129 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008612-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xsg4k4
title: Occurrence Download

description: A dataset containing 505 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acidota quadrata (Zetterstedt, 1838)"
 ]
}

 The dataset includes 505 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001460-150330110031120/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c4jwq2
title: Occurrence Download

description: A dataset containing 2730 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chinese Taipei",
 "TaxonKey is Mikania micrantha Kunth"
 ]
}

 The dataset includes 2730 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0326457-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-72764
title: Redemption tidings, vol. 52, nos. 1-52, 1 Jan. - 23 Dec. 1976

description: [description english/roman)] Issued weekly. "The vital voice of pentecost today" -- subtitle.
DOI: 10.15468/dl.e87986
title: Occurrence Download

description: A dataset containing 63915 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potamogeton polygonifolius Pourr."
 ]
}

 The dataset includes 63915 records from 429 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107829-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.27pfw6
title: Occurrence Download

description: A dataset containing 426199 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-136.15144 42.9514,-122.20372 42.9514,-122.20372 58.04993,-136.15144 58.04993,-136.15144 42.9514))",
 "HasCoordinate is true",
 "TaxonKey is Tracheophyta",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 426199 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068927-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xptsmt
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Archbold Biological Station Arthropod Collection",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lepidoptera"
 ]
}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089365-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-72768
title: Redemption tidings, vol. 52, nos. 1-52, 1 Jan. - 23 Dec. 1976

description: [description english/roman)] Issued weekly. "The vital voice of pentecost today" -- subtitle.
DOI: 10.15468/dl.qnguss
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potamogeton ×ogdenii Hellq. & R.L.Hilton"
 ]
}

 The dataset includes 61 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107840-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.37kgxy
title: Occurrence Download

description: A dataset containing 1190 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Paspalum paspalodes (Michx.) Scribn."
 ]
}

 The dataset includes 1190 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063264-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-72612
title: Redemption tidings, vol. 52, nos. 1-52, 1 Jan. - 23 Dec. 1976

description: [description english/roman)] Issued weekly. "The vital voice of pentecost today" -- subtitle.
DOI: 10.15468/dl.qabfww
title: Occurrence Download

description: A dataset containing 82626 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhamnus cathartica L."
 ]
}

 The dataset includes 82626 records from 418 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039643-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u9f4cs
title: Occurrence Download

description: A dataset containing 1518 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Specimen)",
 "GadmGid is USA.27_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Megachilidae"
 ]
}

 The dataset includes 1518 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088027-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-72594
title: Redemption tidings, vol. 52, nos. 1-52, 1 Jan. - 23 Dec. 1976

description: [description english/roman)] Issued weekly. "The vital voice of pentecost today" -- subtitle.
DOI: 10.15468/dl.kxmkvc
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aculodes hibisci Huang, 1992"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074042-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwdtfy
title: Occurrence Download

description: A dataset containing 1088 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pogonia japonica Rchb.f."
 ]
}

 The dataset includes 1088 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089363-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.