cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26245895.v8
title: Dataset for Ambiguous Resonances in Multipulse Quantum Sensing with NVs

description: This dataset contains simulations for ambiguous resonances present in XY8-M dynamical decoupling multipulse sequences with nitrogen vacancy (NV) color centers in diamonds. Over 10<sup>4</sup> combinations of experimental parameters as the order M, magnetic field B<sub>0</sub>, misalignment angle θ and <sup>13</sup>C families are considered for ambiguous resonances arising from <sup>15</sup>N and <sup>13</sup>C nuclear spins coupled to NVs. For a detailed discussion about the physics of these ambiguous resonances please refer to the arXiv paper at the related materials.For efficient storage and quick retrieval, the dataset is provided as an HDF5 file (dataset.h5), which can be visualized via the graphical user interface (GUI) provided here (dataset_gui.py). Both of the files should be downloaded and stored in the same folder. The GUI is based on the Python bindings for Qt6, with dependencies on NumPy, Matplotlib, PyQt6/PySide6, HDF5 and PyTables packages. Thus, we recommend creating a conda virtual environment with:<b>conda create --name dataset-env python </b><b>numpy matplotlib pyside6 pytables</b><b>conda activate dataset-env</b>To launch the GUI, one can simply run the following command in the cloned repository within the conda environment:<b>python dataset_gui.py</b>This will launch the GUI with the standard HDF5 file. However, if the user wants to have a different dataset file or different path, the --dataset flag can be used as follows:<b>python dataset_gui.py --dataset /PATH/CUSTOM_DATASET.hdf5</b>The use of the GUI is intuitive and self-explanatory. As shown in the screenshot, there are two tabs, one for <sup>15</sup>N and the other for <sup>13</sup>C ambiguous resonances. The m<sub>s</sub> state of the electronic spin transition needs to be chosen, with the order M of the XY8 sequence, the bias magnetic field B<sub>0</sub>, minimum and maximum tau or f range. In addition, for <sup>15</sup>N, the misalignment angle θ must be specified and for <sup>13</sup>C, the carbon family. The expected resonances from the gyromagnetic ratios of other nuclear spins can also be compared with. A text file with experimental data can be plotted together with the simulation for spectral disambiguation, with the conditions that it can be read by numpy.loadtxt and its first column representing τ or f in the selected units and the second indicating the XY8 intensity. Finally, the plot can be customized and exported. New simulations for ambiguous resonances will be continuously added to the dataset. Continued open-source development of the GUI occurs at https://github.com/QISS-HZB/ambiguous-resonances-dataset.<br>If for some reason the files cannot be downloaded from Figshare, please use the backup link: https://box.fu-berlin.de/s/ajm6wijbKWJQKQS .(optional) To make sure that the dataset was downloaded correctly, a sha256 checksum can be performed with<b>sha256sum dataset.h5</b>It should match 94fd4c725c1353ac68a4102e8f825a59766bcafe5f6e140915a94df084845937 .<br><br>Dataset: version 2.0GUI: version 2.0
DOI: 10.6084/m9.figshare.24866085.v2
title: 视网膜分支静脉阻塞患者的光学相干断层扫描血管造影数据集

description: 数据包括原始图像、相应的标签和临床文本信息表。Soul.zip 包括六个不同的子集，每个子集对应不同数量的手术和随访，对应于名称 1.1、1.2 等。每个子集都包含原始图像和人机协作框架生成的标签。Excel 工作表包含两个子表，即患者级别的详细信息和单个图片级别的详细信息。
DOI: 10.6084/m9.figshare.21408435.v1
title: Global projections of changes in terrestrial vertebrate species richness under future climate change and land-use change

description: The projection maps represent changes in local species richness under different land-use and climate-change scenarios (see attached README.pdf for details)
DOI: 10.6084/m9.figshare.24073800.v2
title: Tarpon Gillnet Data Study

description: Data includes all TPWD gillnet data that pertains to tarpon in Texas.
DOI: 10.6084/m9.figshare.27377595.v1
title: FBD-SV-2024

description: The Flying Bird object Dataset in Surveillance Video (FBD-SV-2024) for surveillance video flying bird object detection algorithm development and performance evaluation.<br>The FBD-SV-2024 comprises 483 video clips, totaling 28,694 frames of images. Among these frames, 23,833 frames contain a total of 28,366 instances of flying birds.<br>Visit the GitHub repository for more data processing scripts: https://github.com/Ziwei89/FBD-SV-2024_githubTraining set: 400 video clips, totaling 23,979 frames of images.<br>Testing set: 83 video clips, totaling 4,715 frames of images.Due to the large size of image data, no images have been uploaded, but relevant Python scripts are provided. These scripts can be run to extract frames from the videos. See the readme_English.txt for more information.Please refer to the paper related to this dataset for more description of the characteristics of this dataset. The link of the paper : https://arxiv.org/abs/2409.00317<br>Please refer to the paper if the dataset is useful for your work:<br>@misc{sun2024fbdsv2024,<br>title={FBD-SV-2024: Flying Bird Object Detection Dataset in Surveillance Video},<br>author={Zi-Wei Sun and Ze-Xi Hua and Heng-Chao Li and Zhi-Peng Qi and Xiang Li and Yan Li and Jin-Chi Zhang},<br>year={2024},<br>eprint={2409.00317},<br>archivePrefix={arXiv},<br>primaryClass={cs.CV}<br>}Note: This dataset is for learning and research purposes only, not for commercial use.
DOI: 10.6084/m9.figshare.7636301.v4
title: EEG data of motor imagery for stroke

description: This dataset is about motor imagery experiment for stroke patients. Every patient has the right one and left one in according to paretic hand movement or unaffected hand movement.
DOI: 10.6084/m9.figshare.20222361.v3
title: FINER: Food Ingredient NER Dataset

description: The FINER dataset is available in the CONLL data format. It is built from recipe text scraped from the Allrecipes website. The dataset contains 181.970 sentences (ingredient phrases) in an IOB2 format tag with five defined entities such as ingredient, product, quantity, unit, and state.
DOI: 10.6084/m9.figshare.8309900.v1
title: Physicochemical properties of the six tailing samples

description: This table presents the physicochemical properties of the six tailing samples
DOI: 10.6084/m9.figshare.96582.v2
title: Global Distribution of Open Access Items (2012)

description: The dataset shows the global distribution of open access items (2004-2012) indexed in the Bielefeld Academic Search Engine (BASE). The datasets are presented in csv and xslx. Based on the data a visualization was created and published in LIBREAS. Library Ideas (an Open Access e-only journal). For the citable URN of the visualization see the link.
DOI: 10.6084/m9.figshare.6026504.v1
title: Ralston & Myatt 2018

description: <b>Data dictionary</b><br>Files are:<br> <b>surveyDB1.zip</b><br> All data, password protected, requires UNCHR<br> permissions<br> <b>surveyDB2.zip</b><b><br></b> Data without UNHCR data<br>Permission to use the part of the "UNHCR Public HealthDataset / SENS global survey database" that is includedin the file 'surveyDB1.zip' should be sought from the UnitedNations High Commissioner for Refugees (UNHCR):<br> Ann Burton Chief of Public Health Section Division of Programme Support and Management United Nations High Commissioner for Refugees 94 Rue de Montbrillant 1202 Geneva Switzerland<br> burton@unhcr.org<br>Once you have obtained permissions you should request the password from:<br> mark@brixtonhealth.com<br>Variables in both files are:<br> <b>country</b> - Country of origin <b>id</b> - Name of original survey dataset <b>age</b> - Age in months <b>sex</b> - Sex of child (1 = Male; 2 = Female) <b>weight</b> - Weight in kg <b>height</b> - Height in cm <b>muac</b> - MUAC in mm <b>haz</b> - Height-for-age z-score (WHO Growth Standards) <b>waz</b> - Weight-for-age z-score (WHO Growth Standards) <b>whz</b> - Weight-for-height z-score (WHO Growth Standards) <b>year</b> - Survey year<br>
DOI: 10.6084/m9.figshare.22707766.v1
title: Data.xlsx

description: This is the data supporting the article "Design and Value Analysis of the Blockchain-based Port Logistics Financial Platform"
DOI: 10.21954/ou.rd.27917493.v1
title: Supplementary materials for PhD thesis “The Aeolian Roof: a building integrated wind and solar energy system in order to supply the electricity needs of a building”

description: <i>This dataset comprises the files contained on a CD-ROM which was attached to the thesis when it was submitted in 2007. It was uploaded to ORDO in 2024 for preservation purposes. For more information, please refer to the th</i><i>esis “</i><i>The Aeolian Roof: a building integrated wind and solar energy system in order to supply the electricity needs of a building</i><i>” via ORO.</i><b>Abstract</b>This thesis has researched an innovative way of providing ‘<i>zero carbon dioxide emitting electricity</i>’ by the use of a patented novel wind or wind and solar building integrated energy system, the <i>Aeolian Roof</i>. The <i>Aeolian Roof</i> conceived and patented by Dr Derek Taylor, is specifically intended to act as a wind power concentrator, increasing the amount of wind resource available on the top of the building for wind energy exploitation. In order to achieve that, the <i>Aeolian Roof</i> uses a special fairing or wing-like 'planar concentrator' known as a <i>SolAirfoil</i><sup>TM</sup>, which, in the particular arrangement examined in this thesis is attached and aligned to the upper region of the roof of a building.<br><br>The theoretical modelling of the <i>Aeolian Roof</i> has been undertaken with the aid of steady-state two dimensional Computational Fluid Dynamics (CFD) simulations. CFD results led to the construction of the first <i>Aeolian Roof</i> prototype on a dual pitch low-rise building located on an open country terrain. The experimental part of this work has shown that the <i>Aeolian Roof</i> concept works as a means of enhancing the power generated by a building-mounted wind turbine. For the <i>Aeolian Roof</i> configuration tested, it is possible to increase the wind power generated by a wind turbine in the <i>Aeolian Roof</i> by up to 60%. Means of achieving further enhancement have been identified as a result of this work and further testing is currently taking place.<br><br>The combination of hourly weather data and the experimental results have shown that for a site with an annual mean wind speed of 4.6 m/s on an exposed terrain the annual electricity produced with an <i>Aeolian Roof</i> should be capable of exceeding that generated over a year by the same wind turbine mounted on a mast - but able to yaw - by 12%. In terms of providing a value for the cost of the electricity generated with the <i>Aeolian Roof</i>, the analysis undertaken in this thesis has shown that for discount rates between 3.5% and 7.5% the cost of the electricity generated with the Mark 1 <i>Aeolian Roof</i> could be between 12 and 16 p/kWh respectively.
DOI: 10.6084/m9.figshare.5126602.v1
title: Supplementary Material for: A Serine Protease Homolog Negatively Regulates TEP1 Consumption in Systemic Infections of the Malaria Vector Anopheles gambiae

description: Clip domain serine protease homologs are widely distributed in insect genomes and play important roles in regulating insect immune responses, yet their exact functions remain poorly understood. Here, we show that CLIPA2, a clip domain serine protease homolog of <i>Anopheles gambiae</i>, regulates the consumption of the mosquito complement-like protein TEP1 during systemic bacterial infections. We provide evidence that CLIPA2 localizes to microbial surfaces in a TEP1-dependent manner whereby it negatively regulates the activity of a putative TEP1 convertase, which converts the full-length TEP1-F form into active TEP1<sub>cut</sub>. CLIPA2 silencing triggers an exacerbated TEP1-mediated response that significantly enhances mosquito resistance to infections with a broad class of microorganisms including <i>Plasmodium berghei</i>, <i>Escherichia coli</i> and the entomopathogenic fungus <i>Beauveria bassiana</i>. We also provide further evidence for the existence of a functional link between TEP1 and activation of hemolymph prophenoloxidase during systemic infections. Interestingly, the enhanced TEP1-mediated immune response in <i>CLIPA2</i> knockdown mosquitoes correlated with a significant reduction in fecundity, corroborating the existence of a trade-off between immunity and reproduction. In sum, CLIPA2 is an integral regulatory component of the mosquito complement-like pathway which functions to prevent an overwhelming response by the host in response to systemic infections.
DOI: 10.6084/m9.figshare.28605911.v1
title: Supplementary Material for: Automated Identification of Stroke Thrombolysis Contraindications from Synthetic Clinical Notes – a Proof-of-Concept Study

description: Background: Timely thrombolytic therapy improves outcomes in acute ischemic stroke. Manual chart review to screen for thrombolysis contraindications may be time-consuming and prone to errors. We developed and tested a large language model (LLM)-based tool to identify thrombolysis contraindications from clinical notes using synthetic data in a proof-of-concept study. 

Methods: We generated 150 synthetic clinical notes containing randomly assigned thrombolysis contraindications using LLMs. We then used Llama 3.1 405B with a custom prompt to generate a list of thrombolysis contraindications from each note. Performance was evaluated using sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV), accuracy, and F1 score. 

Results: A total of 150 synthetic notes were generated using five different models: ChatGPT-4o, Llama 3.1 405B, Llama 3.1 70B, ChatGPT-4o mini, and Gemini 1.5 Flash. On average, each note contained 241.6 words (SD 110.7; range 80-549) and included 1.5 contraindications (SD 1.1; range 0-5). Our tool achieved a sensitivity of 90.9% (95% CI: 86.3%-94.3%), specificity of 99.2% (95% CI: 98.8%-99.5%), PPV of 87.7% (95% CI: 82.7%-91.7%), NPV of 99.4% (95% CI: 99.1%-99.6%), accuracy of 98.7% (95% CI: 98.2%-99.0%), and an F1 score of 0.892. Among the false positives, 24 (86%) were due to the inclusion of irrelevant contraindications, and 4 (14%) resulted from repetitive information. No hallucinations were observed. 

Conclusion: Our LLM-based tool may identify stroke thrombolysis contraindications from synthetic clinical notes with high sensitivity and PPV. Future studies will validate its performance using real EMR data and integrate it into acute stroke workflows to facilitate faster and safer thrombolysis decision-making.
DOI: 10.6084/m9.figshare.3518993.v1
title: Appendix A. Leaf characteristics of 17 southeastern tree species.

description: Leaf characteristics of 17 southeastern tree species.
DOI: 10.6084/m9.figshare.21913710.v1
title: Supplementary Data 4.xlsx

description: Supplementary data table 4; titanite trace elements.
DOI: 10.6084/m9.figshare.24370354.v1
title: Pipeline to quantify ribosome biogenesis activity

description: Pipeline to quantify ribosome biogenesis activity based on transcriptome expression data
DOI: 10.6084/m9.figshare.28408406.v1
title: Data and processed files of Hetero atom doped flourinated carbon for ORR catalysts in aluminium air batteries

description: This dataset contains raw experimental data related to the structural, morphological, and electrochemical characterization of fluorine (F), nitrogen (N), and sulfur (S)-doped carbon catalysts (FC, FCN, FCNS) synthesized for oxygen reduction reaction (ORR) applications in aluminium-air batteries. The dataset includes X-ray diffraction (XRD)(.ASCII), Raman spectroscopy(.xslx), X-ray photoelectron spectroscopy (XPS)(.opj), field emission scanning electron microscopy (FESEM)(.tiff), high-resolution transmission electron microscopy (HRTEM)(.tiff), and various electrochemical techniques such as cyclic voltammetry (CV)(.opj), linear sweep voltammetry (LSV)(.opj), rotating ring-disk electrode (RRDE) (.opj) analysis, and galvanostatic discharge measurements (.opj).These data provide insights into the structural phases, defect density, chemical states, electrocatalytic performance, and discharge characteristics of the synthesized catalysts, contributing to the understanding of metal-free carbon-based materials for sustainable energy applications.Usage Notes:XRD and Raman spectra can be reanalyzed in Origin, HighScore, Match!, or other XRD software.XPS data can be analysed using origin.FESEM and HRTEM images reveal morphological details, including porosity and interlayer structures.CV, LSV, and RRDE data can be processed in Origin to extract kinetic parameters such as onset potential, half-wave potential, electron transfer number (n), and kinetic current density (J_k).Discharge curves provide insights into the practical energy output of the catalysts when applied in aluminium-air battery configurations.Data Accessibility:The raw data files are available in their original, unprocessed format.Processed files (such as normalized spectra, peak fittings, and kinetic plots) can be requested from the corresponding author.
DOI: 10.6084/m9.figshare.20208686.v1
title: Supplementary Material for: Radiation Myelopathy Caused by Palliative Radiotherapy and Intrathecal Methotrexate

description: Radiation myelopathy is a rare, late-stage adverse event that develops following irradiation at or above 50 Gy. Here, we report a case of irreversible paraplegia caused by palliative radiation (20 Gy in 5 fractions) to the spinal cord combined with intrathecal methotrexate (IT-MTX). A 69-year-old man presented with back pain, prompting a diagnosis of acute myeloid leukemia. At the first visit, he complained of muscle weakness and hypoesthesia in both legs; spinal magnetic resonance imaging (MRI) revealed an epidural mass compressing the spinal cord at the fifth to seventh level of the thoracic vertebrae. This was considered to be an extramedullary lesion of leukemia, and he received remission induction therapy including IT-MTX; palliative radiation (20 Gy in 5 fractions) of the epidural mass was initiated the following day. Then, during the course of consolidation therapy, a second IT-MTX was performed after 1 month and a third after 3 months. While the consolidation therapy was complete, yielding remission, he developed sudden paraplegia, as well as bladder and bowel dysfunction (BBD), 10 months later. Spinal MRI showed extensive intramedullary high signal intensity on T2-weighted image, including the irradiation field. It was thought myelopathy was due to irradiation of the spinal cord combined with IT-MTX. He immediately received steroid pulse therapy; however, the paraplegia and BBD did not improve. It is extremely rare for irreversible radiation myelopathy to occur with IT-MTX and palliative radiation to the spinal cord. We believe that even with low-dose palliative radiation, caution is required for combined use with IT-MTX.
DOI: 10.6084/m9.figshare.21756269.v1
title: Slingshots

description: High framerate imaging data of a <em>P. aeruginosa </em>monolayer, analysed using FAST. Slingshots_Raw_Data.ome.zip is an archive containing the raw imaging data used for this dataset. Segmentations.zip contains the result of applying FAST's segmentation routine to the data in Slingshots_Raw_Data. Segmentation settings are specified in SegmentationSettings.mat. TrackabilityStore.mat contains the trackability data used to generate the inset of Fig. 4a of our manuscript. All other data is formatted according to the usual specifications of FAST. See the project Wiki for more.
DOI: 10.6084/m9.figshare.28333604.v1
title: Supplementary Material for: Cardiovascular and Renal Outcomes with Ertugliflozin by Baseline Use of Renin–Angiotensin–Aldosterone System Inhibitors or Diuretics, Including Mineralocorticoid Receptor Antagonists: Analyses from the VERTIS CV Trial

description: Introduction: VERTIS CV was a placebo-controlled cardiovascular (CV) outcome trial evaluating the sodium-glucose cotransporter 2 inhibitor ertugliflozin in patients with type 2 diabetes and established atherosclerotic CV disease. The aim of the current analyses was to evaluate VERTIS CV cardiorenal outcomes according to baseline use of renin–angiotensin–aldosterone system (RAAS) inhibitors or diuretics, including mineralocorticoid receptor antagonists (MRAs).
Methods: Participants received ertugliflozin 5 mg, ertugliflozin 15 mg, or placebo once daily and were followed for a mean of 3.5 years. Prespecified CV and kidney outcomes were analyzed by Cox proportional hazard modeling in participant subgroups defined by baseline use of RAAS inhibitors (angiotensin-converting enzyme inhibitors, angiotensin II receptor blockers) or diuretics (loop diuretics, non-loop diuretics, MRAs), with interaction testing to assess for treatment effect modification.
Results: A total of 8246 patients were randomized in VERTIS CV. At baseline, 6686 (81%) participants were being treated with RAAS inhibitors, 3542 (43%) with diuretics, 1252 (15%) with loop diuretics, and 674 (8%) with MRAs. No significant interactions were observed for cardiorenal outcomes by baseline use of RAAS inhibitors or MRAs (Pinteraction &gt; 0.05 for all). Statistically significant interactions for a first event of hospitalization for heart failure (HHF) or CV death, and of HHF (alone), were observed with baseline use of diuretics, including loop diuretics, with an increased benefit of ertugliflozin treatment versus placebo. 
Conclusion: In VERTIS CV, baseline use of diuretics, particularly loop diuretics, identified a subgroup that demonstrated greater benefit with ertugliflozin on first HHF/CV death and HHF outcomes, with no modification of treatment effect observed with baseline use of RAAS inhibitors or MRAs. There was no evidence of treatment effect on the kidney composite outcomes by baseline use of RAAS inhibitors, diuretics, loop diuretics, or MRAs.

ClinicalTrials.gov identifier: NCT01986881
DOI: 10.6084/m9.figshare.7699583.v1
title: fourpainphenotype2

description: hip pain, knee pain, neckshoulder pain, pain all over body
DOI: 10.6084/m9.figshare.12200144.v1
title: Example File 2.txt

description: Example files to run DrugSimDB interface
DOI: 10.6084/m9.figshare.25243276.v1
title: High-performance concrete mixture

description: The dataset includes a total of 1,030 concrete sample records from 17 concrete strength test laboratories and cover nine attributes, eight of which are input factors and one of which is an output factor.
DOI: 10.6084/m9.figshare.24069735.v1
title: Taylor, et al. Supplementary Files

description: Supplementary files for Taylor et al. 2023
DOI: 10.6084/m9.figshare.5002019.v2
title: Spore viability and segregant data from Kondrateva 2001

description: Spore viability and segregant data from Kondrateva 2001