cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25452/figshare.plus.24486904.v1
title: Microconfined High-Pressure Transcritical Channel Flow Dataset

description: First comprehensive, open-source dataset carefully curated and structured for studying microconfined high-pressure transcritical fluid channel flows under various regimes. In particular, the dataset contains 18 direct numerical simulations of carbon dioxide at different bulk pressure and velocities confined between differentially-heated walls. For all cases, the thermodynamic conditions selected impose the fluid to undergo a transcritical trajectory across the pseudo-boiling region. The data collection comprises an array of physical quantities that enable comprehensive parametric analyses spanning laminar, transitional, and turbulent flow regimes. This data repository is poised to provide access to the detailed study and modeling of the complex physics observed in high-pressure transcritical fluid environments, especially those closely linked to improving microfluidics performance.The data is structured in a manner where individual cases are allocated in dedicated folders, facilitating in this way convenient access and data processing. Each case folder is structured in different FTT subfolders, which contain 10 snapshot files of the corresponding FTT uniformly spaced in time. Additionally, there is a README.txt file in each case folder that provides essential information about the individual case, such as (i) key independent parameters, (ii) dimensionless numbers, (iii) details on the calculation of the stretching factor in the y-direction, and (iv) the time advancement technique. The dataset files within the FTT subfolders are stored in the Hierarchical Data Format version 5 (h5), an open-source file format capable of handling complex and diverse data. There is also an associated xdmf file that contains data descriptions for these files, which can be visualized with, for example, the open-source software Paraview. Moreover, each case folder also includes a configuration file and a substances library file in YAML format. Likewise, there are C++ files in both .cpp and .hpp formats, allowing users to replicate the simulations for further investigation and/or verification. Finally, a post-processing script is supplied with the dataset, specifically designed to streamline the presentation of primary variables while concurrently computing derived quantities.
DOI: 10.6084/m9.figshare.28760600.v1
title: Wetterdaten_IPA_2001_2024.parquet

description: The provided data summarizes the atmospheric measurements taken at the weather station of the Institute of Atmospheric Physics at Johannes Gutenberg University Mainz, covering various parameters over different time periods and depths below and above the ground. For more information see "Description_weather_data.pdf"Location:The weather station has had three different locations:<b>Botanical Garden</b> (2001 - 4.9.2007)<b>Am Brunnen</b> (2.11.2007 - 12.5.2009)<b>Current Location</b> since 4.8.2009Variables:The dataset includes the following variables:<b>Time (</b><code>Zeit</code><b>)</b>: Recorded in UTC format (YYYY-MM-DD HH:MM:SS).<b>Temperature Measurements</b>:Various depths below the ground:<code>-2m</code>, <code>-1m</code>, <code>-50cm</code>, <code>-20cm</code>, <code>-10cm</code>, <code>-5cm</code>, <code>-2cm</code> (measured in °C)Above ground temperatures:<code>t5cm</code>, <code>t20cm</code>, <code>t2m</code> (all measured in °C)<b>Wind Measurements</b>:<code>Windri</code>: Wind direction (°) at 10 m above ground.<code>Windges</code>: Mean wind speed (m/s) from the latest measurement interval.<code>Windmax</code>: Maximum wind gust (m/s) from the latest measurement interval.<b>Humidity and Pressure</b>:<code>relHum</code>: Relative humidity (%) at 2 m above ground.<code>Press</code>: Atmospheric pressure (not specified in the list).<b>Precipitation</b>:<code>Niederschlag</code>: Precipitation (mm) during the last measurement interval.<code>Kumulativer_Niederschlag</code>: Accumulated precipitation (mm) for the current year.<b>Irrelevant or Ignorable Values</b>: The dataset includes variables labeled as <code>Cont</code>, <code>Wert</code>, and <code>Differenz</code>, which should not be used for scientific analysis.<br>
DOI: 10.6084/m9.figshare.20509863.v1
title: Data Figure 2, JIE

description: Raw data for Figure 2 of the article "The influence of consumer behavior on the environmental footprint of passenger car tires" published in the Journal of Industrial Ecology.
DOI: 10.6084/m9.figshare.28685312.v18
title: Supplementary Material for: Evidence on protective factors for dementia and cognitive impairment in older adults: an umbrella review

description: Introduction: Dementia represents a global public health challenge, and no conclusive evidence exists on how to prevent its onset or at least reduce the risk. This umbrella review aims to identify interventions or exposures that can reduce the incidence of dementia or cognitive impairment.
Methods: A search of meta-analyses and systematic reviews published from 2018 to 2025 (January) was conducted across four databases. Articles assessing associations between interventions or exposures to protective factors and incidence of dementia or cognitive decline in non-demented older adults were selected.
Results: Out of 6,324 articles, 177 underwent full-text screening, and 17 were included. They showed that psychosocial factors (social engagement, purpose in life, life satisfaction, and cognitive reserve) and influenza vaccination protect against dementia. Evidence on antihypertensives is promising, while evidence on low-dose aspirin is promising yet inconclusive. No clear results emerged for both single- and multi-domain lifestyle interventions.
Conclusions: These results offer new insight on potential targets for dementia prevention, a global public health priority. In particular, favorable psychosocial factors and influenza vaccination, undervalued in the scientific debate on dementia prevention, emerged as promising and feasible targets for preventive initiatives. Future research should focus on fine-tuning interventions to promote brain health, exploring their underlying mechanisms, and developing targeted and personalized strategies for specific population subgroups.
DOI: 10.6084/m9.figshare.22731560.v1
title: Alteration of the gut microbiota composition

description: rawdata. Alteration of the gut microbiota composition after P.g injection of health and diabetes rats.
DOI: 10.17632/2ncfnfg8h9
title: The observed data and code

description: The measured data and the code used for the study "Characterizing ozone pollution and the relationship to its precursors since Clean Air Action Plan Phase II in China: A case study"
DOI: 10.17632/8cw3ygfssy
title: KorB switching from DNA-sliding clamp to repressor mediates long-range gene silencing in a multi-drug resistance plasmid

description: Examples of long-range gene regulation in bacteria are rare and generally thought to involve DNA looping. Here, using a combination of biophysical approaches including X-ray crystallography and single-molecule analysis for the KorB-KorA system in Escherichia coli, we show that long-range gene silencing on the plasmid RK2, a source of multi-drug resistance across diverse Gram-negative bacteria, is achieved cooperatively by a DNA-sliding clamp, KorB, and a clamp-locking protein, KorA. We show that KorB is a CTPase clamp that can entrap and slide along DNA to reach distal target promoters up to 1.5 kb away. We resolved the tripartite crystal structure of a KorB-KorA-DNA co-complex, revealing that KorA latches KorB into a closed clamp state. DNA-bound KorA thus stimulates repression by stalling KorB sliding at target promoters to occlude RNA polymerase holoenzymes. Together, our findings explain the mechanistic basis for KorB role switching from a DNA-sliding clamp to a co-repressor, and provide an alternative mechanism for long-range regulation of gene expression in bacteria.
DOI: 10.17632/h4g7zfcj52
title: Photochemical Box Model Quito

description: These files have been prepared for the paper entitled "Comparative ozone production sensitivity to NOx and VOCs in Quito, Ecuador and Santiago, Chile" submitted to Atmospheric Chemistry and Physics in March, 2025.
 
Authors: María Cazorla1, Melissa Trujillo1, Rodrigo Seguel2,3, Laura Gallardo2,3
 
1Universidad San Francisco de Quito USFQ, Instituto de Investigaciones Atmosféricas, Quito, Ecuador
2Center for Climate and Resilience Research (CR2), Universidad de Chile, Santiago, Chile
3Departamento de Geofísica, Facultad de Ciencias Físicas y Matemáticas, Universidad de Chile, Santiago, Chile

This dataset belongs to a comparative analysis of ozone production rates in Quito, Ecuador and Santiago, Chile. Preprint available at: https://doi.org/10.5194/egusphere-2024-3720

Here we provide the MATLAB code and files used to run the model. Additionally, files can be found in the path: 
Photochemical_Model_Quito_Santiago&gt;Quito Input Files F0AM, at https://observaciones-iia.usfq.edu.ec/ 

Files

input_uio.mat: complete dataset with 10-minute resolution of meteorological and air quality variables for Quito.
 
MX50_UIO.mat: complete dataset with 10-minute resolution of VOCs (percentile 50) for Quito.

Quito_model.m: model run, use with input_uio.mat, MX50_UIO.mat, and mcm_subset.m. This is an executable file for the F0AM (Framework for 0-D Atmospheric Modeling) (Wolfe et al., 2016).

mcm_subset.m: MCMv331 mechanism with all the chemical species used. This mechanism is called in Quito_model.m. The chemical mechanistic information was taken from the Master Chemical Mechanism, MCM v3.3.1 (Bloss et al., 2005; Jenkin et al., 1997, 2003, 2015; Saunders et al., 2003), via website: www.mcm.york.ac.uk. 

References

Bloss, C., Wagner, V., Jenkin, M. E., Volkamer, R., Bloss, W. J., Lee, J. D., Heard, D. E., Wirtz, K., Martin-Reviejo, M., Rea, G., Wenger, J. C., and Pilling, M. J.: Development of a detailed chemical mechanism (MCMv3.1) for the atmospheric oxidation of aromatic hydrocarbons, Atmos Chem Phys, 5, 641–664, https://doi.org/10.5194/acp-5-641-2005, 2005.

Wolfe, G. M., Marvin, M. R., Roberts, S. J., Travis, K. R., and Liao, J.: The Framework for 0-D Atmospheric Modeling (F0AM) v3.1, Geosci Model Dev, 9, 3309–3319, https://doi.org/10.5194/gmd-9-3309-2016, 2016.
DOI: 10.6084/m9.figshare.28760111.v1
title: Supplementary Material for: Thrombocytopenia in Children and Young Adults undergoing Continuous Renal Replacement Therapy: A WE-ROCK Study

description: Background: Thrombocytopenia in patients treated with continuous renal replacement therapy (CRRT) in adults is associated with mortality. Pediatric data are limited. We evaluated the association between pre-CRRT thrombocytopenia and platelet decline at 24 hours of CRRT with outcomes. 
Methods: Secondary analysis of the Worldwide Exploration of Renal Replacement Outcomes Collaborative in Kidney Disease (WE-ROCK), including patients birth-25 years who underwent CRRT. Exclusions were end-stage kidney disease, non-acute kidney injury/fluid overload CRRT indication, concurrent extracorporeal membrane oxygenation, missing baseline platelets, platelet disorders, and hematologic malignancy. Primary exposures were (1) pre-CRRT thrombocytopenia, (≤100×103/μL) and (2) ≥30% decline at 24 hours of CRRT in those with pre-CRRT &gt;100×103/μL. Primary outcome was survival to intensive care unit (ICU) discharge. Secondary outcomes included major adverse kidney events at 90 days (MAKE90) [death, dialysis dependence, creatinine &gt;125% baseline]) from CRRT initiation. 
Results: 805 patients were included. 63.9% had baseline thrombocytopenia, median (IQR) platelets of 38 (20, 63) ×103/μL. Baseline thrombocytopenia occurred in younger septic patients with higher illness severity. A ≥30% decline occurred in 33% of patients. Those with a ≥30% platelet decline were more commonly younger patients and had smaller catheters. Pre-CRRT thrombocytopenia and platelet decline were associated with ICU mortality in univariate but not multivariate models. There was no association with MAKE90. 
Conclusions: Thrombocytopenia is common prior to CRRT initiation and is associated with greater illness severity. Mechanical factors (blood flow and line size) may contribute to platelet decline. Prospective studies are needed to delineate the clinical and mechanical factors associated with thrombocytopenia and associated outcomes.
DOI: 10.6084/m9.figshare.19823473.v2
title: snore and insulin dataset.xlsx

description: For this study, data was chosen from 2015-2NHANES (https://www.cdc.gov/nchs/nhanes/index.htm), a database designed to assess the health and nutritional status of adults and children in the United States. The initial number of individuals was 19225, however, individuals with missing body mass index (BMI) data (n=2464), insulin data (n=6014), snoring frequency data (n=5895) and participants of other races (multi-racial, n=232) were excluded. The final number of participants was 4620.
DOI: 10.17632/p92b432b2f
title: Spectroscopic profiling data of formula milk products from two brands

description: Item List: 1) 7341_C2.txt – The data set in CSV (comma separated value) format. The first column is 'label'. Value can be either 1 (1st Brand) or 2 (2nd Brand). The rest 2090 columns are the Raman wavenumbers. Each row is a sample. This data set is typically used for brand classification. 2) Code _Report.pdf – The code and data analysis report for compressed sensing research. -------------------- If you use this data set, please add the reference: [1] Adaptive compressed sensing of Raman spectroscopic profiling data for discriminative tasks [J]. Talanta, 2020, doi: 10.1016/j.talanta.2019.120681
DOI: 10.15468/dl.q9hjb7
title: Occurrence Download

description: A dataset containing 226533 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carcharhinus melanopterus (Quoy & Gaimard, 1824)"
 ]
}

 The dataset includes 226533 records from 161 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009366-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.19499351.v1
title: patches and local annotations, slide 186, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.21624717.v1
title: HCC.docx

description: AFP and PIVKA-II serum levels in 145 HCC.
DOI: 10.6084/m9.figshare.3524129.v1
title: Appendix B. Statistical tables for models used in the analysis, including (Table B1) linear regression demonstrating the variation in fecundity explained by fish length and individual egg mass, (Table B2) general linear models used to analyze male pink salmon reproductive success, and (Table B3) general linear models used to analyze female pink salmon reproductive success.

description: Statistical tables for models used in the analysis, including (Table B1) linear regression demonstrating the variation in fecundity explained by fish length and individual egg mass, (Table B2) general linear models used to analyze male pink salmon reproductive success, and (Table B3) general linear models used to analyze female pink salmon reproductive success.
DOI: 10.6084/m9.figshare.28089725.v1
title: <b>Sampling strategies and mitigation of natural and anthropogenic effects in detrital zircon provenance analysis of fluvial strata</b>

description: Detrital zircon ages are widely used in sediment provenance investigations. However, given the preponderance of studies, relatively few have focused on enhancing the fidelity of data interpretations through the improvement of sampling strategies. Anthropogenic modification to sedimentary systems, like the damming of rivers and construction-related hillslope erosion, generally decreases the confidence that can be placed on detrital zircon-based provenance interpretations. In response to this issue, we sampled fluvial sediments from the Yangtze and Yellow Rivers, and their tributaries, focusing on the anthropogenic effects of sediment mixing between higher- and lower-order streams. The results from our study show that (1) the inflow of lower-order streams has a meaningful impact on the provenance signal of higher-order channels, but the impact distances are quite limited. (2) Lakes have significant hydraulic sorting effects on different-sized particles, and thus, complicate provenance signals, but trapping of zircon by lakes might be more limited. (3) The construction of dams would have a limited long-term impact on the detrital zircon provenance of rivers downstream if sediment could be discharged from the sediment pathway through the dam. (4) Anthropogenic erosion creates provenance signal enrichments of more easily eroded strata and can interfere with natural sediment sourcing. Our results indicate modifications to detrital mineral sampling strategies are needed in modern and paleo fluvial deposits.
DOI: 10.6084/m9.figshare.10095890.v1
title: Supplementary Material for: Protective Effects of Baicalin on Lipopolysaccharide-Induced Injury in <b><i>Caenorhabditis elegans</i></b>

description: <b><i>Objectives:</i></b> Sepsis-induced inflammation injury and oxidative stress are well known causes of mortality. The anti-inflammatory effects of baicalin have been proposed in a mouse model of experimental sepsis. Here, we investigated its protective effects and associated mechanisms with respect to lipopolysaccharide (LPS)-induced injury in <i>Caenorhabditis elegans</i>. <b><i>Methods:</i></b> Worms were stimulated by LPS (100 μg/mL), with baicalin (1, 10, 100 μmol/L), for 24 h. Animal survival rates and behaviors (reversal and omega turn) were then determined. Further, levels of the inflammatory cytokines interleukin 6 (IL-6), IL-1, and tumor necrosis factor (TNF)-α were detected by enzyme-linked immunosorbent assay. Western blotting was also performed to determine the protein expression levels of Toll-like receptor 4 (TLR4), nuclear factor-κB (NF-κB), Bax, and Bcl-2. The activities of malondialdehyde (MDA) and superoxide dismutase (SOD) contents were determined using corresponding kits. <b><i>Results:</i></b> Baicalin (10, 100 μmol/L) improved LPS-stimulated <i>C. elegans</i> survival and rescued behavioral phenotypes. It also suppressed the oxidative stress related to LPS injury by decreasing MDA levels and increasing SOD activity. Moreover, the inflammatory response was inhibited as evidenced by decreased levels of cytokines including IL-6, IL-1, and TNF-α. In addition, baicalin treatment significantly decreased cleaved Bax levels and increased Bcl-2 expression in<i> C. elegans</i> treated with LPS. Simultaneously, the expression of NF-κB and TLR4 was significantly decreased. <b><i>Conclusion:</i></b> Baicalin treatment protects against LPS-induced injury by decreasing oxidative stress, repressing the inflammatory cascade, and inhibiting apoptosis.
DOI: 10.6084/m9.figshare.13121801.v1
title: The unprecedented outbreak of dengue in Singapore, a dataset of geographical dengue clusters covering the nationwide lockdown period in 2020

description: Dengue, a mosquito-transmitted viral disease, has posed a public health challenge to Singaporean residents over the years. In 2020, Singapore has been experiencing an unprecedented dengue outbreak. We collect a dataset of geographical dengue clusters reported by the National Environment Agency (NEA) from 15 Feb to 9 July in 2020, covering the nationwide lockdown period from 7 April to 1 June for controlling the pandemics of COVID-19. NEA regularly updates the dengue clusters during which an infected person may be tagged to one cluster based on the most probably infection location (residential apartment or workplace address), which is further matched to fine-grained spatial units with an average coverage of only about 1.35 km<sup>2</sup>. Such dengue cluster dataset helps not only reveal the dengue transmission pattern, but also reflect the effects of lockdown on dengue spreading dynamics. The resulting data records are released in simple formats for easy access to facilitate studies on dengue epidemics
DOI: 10.6084/m9.figshare.22495594.v1
title: Autophagy activating drug repurposing based on context-specific network for Parkinson’s disease

description: Background: Parkinson's disease (PD) is a major long-term degenerative disease that affects the motor system. Parkinson's disease has been increasing over the past 30 years, despite ongoing research and efforts at drug development. The reason is that previous drug development for Parkinson's disease has mainly focused on recovering dopamine levels, which only provides short-term relief. The treatment of PD requires a fundamental approach to treatment. Recent studies prove that misfolded protein aggregation causes mitochondria dysfunction and neuroinflammation so the elimination of the misfolded protein should offer an effective long-term treatment for Parkinson's disease. A promising mechanism to eliminate the misfolded protein is autophagy. Results: We developed a pipeline to identify autophagy-inducing candidate drugs for Parkinson's disease based on Parkinson's disease-specific network and the relationship between drug targets and core autophagy genes. We found 3 autophagy-related genes using RWR algorithm and six drug-repurposing candidates to PD. Conclusions: Our drug repurposing pipeline provides that candidate drugs that show a notable possibility for fundamental PD treatment by activating the autophagy mechanism.
DOI: 10.6084/m9.figshare.3512420.v1
title: Appendix A. Tables of statistical results from the study, with literature cited.

description: Tables of statistical results from the study, with literature cited.
DOI: 10.6084/m9.figshare.7754420.v1
title: Genotype data of sunflower evaluation panel

description: Genotype data using the Illumina Infinium chip containing 8,723 bi-allelic SNP markers
DOI: 10.6084/m9.figshare.27085897.v1
title: Digital Inclusive Finance Enabling Urban Green Development (数字普惠金融与城市绿色发展)

description: digital financial inclusion; green innovation; urban green development
DOI: 10.6084/m9.figshare.28045826.v2
title: network files from fram virus manuscript Calayag et al.

description: these are the network files, with descriptions that can be found in the 'workflow' document and Calayag et al.