cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28768271.v1
title: xTB_dataset

description: xTB dataset containing 23327 reactions.In the csv file of this dataset:<br>- The ID code of the reaction that enables to group together the reactions with the same reactants<br>- The R number of the reaction<br>- The fully mapped smiles code of the reaction<br>- The activation free energy of the reaction (G(TS) = G(TS) - G(monomer 1) - G(monomer 2))<br>- The reaction free energy (DrG = G(product) - G(monomer 1) - G(monomer 2))- All the energies are given in kcal/mol and were calculated at the xTB level.In each reaction subdirectory:<br>- Geometry of the monomers- Geometry of the pre-reactive complex<br>- Geometry of the transition state- Geometry of the product
DOI: 10.6084/m9.figshare.28943966.v1
title: Supplementary Methods and Supplementary Table for the manuscript "<b>An isothermal workflow for low-cost and PCR free field-based community metabarcoding"</b><b> </b>by Plewnia et al. (Methods in Ecology and Evolution).

description: Supplementary Methods and Supplementary Table for the manuscript "<b>An isothermal workflow for low-cost and PCR free field-based community metabarcoding"</b><b> </b>by Plewnia et al. (Methods in Ecology and Evolution).
DOI: 10.6084/m9.figshare.29083520.v1
title: Gridded data of building material stocks of asphalt

description: 5,538,063 records are weight in urban building MS of asphalt in two urban agglomerations from 2000 to 2020 at 500×500m grid scale.
DOI: 10.17632/hg77f2d6dm
title: The Informal Social Support for Autonomy and Dependence in Pain Inventory Spanish Version (ISSADI-PAIN-SV)

description: Data used to validate the Informal Social Support for Autonomy and Dependence in Pain Inventory Spanish Version (ISSADI-PAIN-SV). Abstract Purpose Perceived social support plays a crucial role in the quality of life of individuals with chronic pain. The Informal Social Support for Autonomy and Dependence in Pain Inventory assesses two functions of social support: the promotion of autonomy and the promotion of dependence. The aim of this study was to adapt this instrument for Spanish-speaking populations. Methods The sample comprised 256 individuals with chronic pain. The structure of the questionnaire was analysed using confirmatory factor analysis, internal consistency indexes, and intercorrelations between the scales. Correlational analyses were performed to assess the associations between the Informal Social Support for Autonomy and Dependence in Pain Inventory and several criteria. Results The structure with the best fit had four related factors: emotional social support for the promotion of autonomy; instrumental social support for the promotion of autonomy; emotional social support for the promotion of dependence; and instrumental social support for the promotion of dependence. The scales showed adequate internal consistency. An association was found between higher levels of instrumental social support on the promotion of dependence and higher levels of pain-related disability and decreased daily functioning. The promotion of autonomy was related to better satisfaction with life. Conclusion The Spanish version of the Informal Social Support for Autonomy and Dependence in Pain Inventory shows appropriate psychometric properties. It is a useful instrument to assess the support relationships between patients with chronic pain and their relatives in order to prevent disability. Keywords Chronic pain · Social support · Autonomy · Dependence · Pain adaptation · Disability
DOI: 10.6084/m9.figshare.12637424.v2
title: Global Snow Drought Data Set - Drought Characteristics

description: This data set contains information about snow droughts (or deficits in snow water equivalent, SWE) and their characteristics (e.g., duration and intensity) across the globe. The snow drought information is derived using SWE from a global reanalysis over 1980-2018, which was standardized using methods described in Huning and AghaKouchak (2020a). We provide the 3-month standardized snow drought index (SWEI) fields used to characterize and monitor snow droughts in the NetCDF4 (classic) format. Changes in snow drought characteristics for seven study regions around the world: the western United States, Europe, Hindu Kush and Central Asia, greater Himalayas, eastern Russia, extratropical Andes, and Patagonia are also provided in an ASCII file.For more information about the standardized SWE index (SWEI) and the regions listed above, refer to Huning and AghaKouchak (2020a).<br>The ASCII file summarizes the change in snow drought characteristics for seven study regions around the world: the western United States, Europe, Hindu Kush and Central Asia, greater Himalayas, eastern Russia, extratropical Andes, and Patagonia. Each row in the file contains information for one of these regions. The first column lists the names of the regions. Columns 2-4 contain information related to the change in 1) total duration of snow droughts, 2) average duration of snow droughts, and 3) exceedance probability of snow drought intensity. A positive (negative) change indicates that an increase (decrease) in the respective variable occurred during the latter half of years in the period 1980-2018. Percent changes are given for both the total and average snow drought durations as the difference normalized by the value of the variable from the first half of the time period. The exceedance probability refers to the chance that the drought intensity (i.e., strength or severity of drought conditions) is greater than the average intensity from the first half of the record. Changes in the probabilities are provided as differences.<br>As a condition of using data from this collection, you must cite this data set/collection and the corresponding publication:<br>1) Huning, L.S., and AghaKouchak, A. (2020b): Global Snow Drought Data Set, <i>figshare</i>, Collection, https://doi.org/10.6084/m9.figshare.c.5055179.2) Huning, L.S., and AghaKouchak, A. (2020a): Global Snow Drought Hot Spots and Characteristics, <i>Proceedings of the National Academy of Sciences</i>, 117(33), 19753-19759, https://doi.org/10.1073/pnas.1915921117.<br>
DOI: 10.6084/m9.figshare.14757918.v1
title: COVID data set.xlsx

description: Data set for COVID kidney stone project.
DOI: 10.6084/m9.figshare.28660316.v1
title: Application of Mixture Density Network for Sample Generation in Behavioral Biometrics

description: This is the basic structure of the programme enabling the reproduction of research results described in publicationSawicki, A., Grabowski, D. (2024). Application of Mixture Density Network for Sample Generation in Behavioral Biometrics. In: Saeed, K., Dvorský, J. (eds) Computer Information Systems and Industrial Management.<br>The downloads contain the imeplemetation of the lstm-mdn models for data generation, and the results of the carried out experiments.
DOI: 10.17632/y9bzvzctwb
title: Trail_zirconfluid

description: All supplementary data for: Trail, D., Chowdhury, W., Tailby, N.D. Ackerson, M.R. Ce and Eu anomalies in zircon as indicators of oxygen fugacity in subsolidus systems. submitted to, Geochim. Cosmochim. Acta in July 2023. As of July 28th, 2023, the data and manuscript have not been though peer review.
DOI: 10.6084/m9.figshare.17143886.v1
title: BUSCO Log Files (for annotations)

description: BUSCO log files for annotations
DOI: 10.6084/m9.figshare.27187623.v1
title: Local pathways of association

description: The data and code of local pathways of association
DOI: 10.17632/ck7mhf82br
title: A detailed quantification of larval zebrafish behavioral repertoire uncovers principles of hunting behavior

description: A draft for a manuscript
DOI: 10.17632/mrx2bpx79x
title: Data for: Alteromonas flava sp. nov. and Alteromonas facilis sp. nov., two novel copper tolerating bacteria isolated from a sea cucumber culture pond in China

description: Two bacterial strains, P0211T and P0213T, were isolated from a sea cucumber culture pond in China. The strains were able to resist high copper levels. These two strains were characterized at the phenotypic, chemotaxonomic, and genomic level. They were completely different colors, but the 16S rRNA genes showed 99.30% similarity. Phylogenetic analysis based on the sequences of the 16S rRNA gene and five housekeeping genes (dnaK, sucC, rpoB, gyrB, and rpoD) supported the inclusion of these strains within the genus Alteromonas, and the two isolated strains formed a group separated from the closest species Alteromonas aestuariivivens KCTC 52655T. Genomic analyses, including average nucleotide identity (ANIb and ANIm), DNA-DNA hybridization (DDH), and the percentage of conserved proteins (POCP), clearly separated strains P0211T and P0213T from the other species within the genus Alteromonas with values below the thresholds for species delineation. The chemotaxonomic features (including fatty acid and polar lipid analysis) of strains P0211T and P0213T also confirmed their differentiation from the related taxa. The results demonstrated that strains P0211T and P0213T represented two novel species in the genus Alteromonas, for which we propose the names Alteromonas flava sp. nov., type strain P0211T (= KCTC 62078T = MCCC 1H00242T), and Alteromonas facilis sp. nov., type strain P0213T (= KCTC 62079T = MCCC 1H00243T).
DOI: 10.6084/m9.figshare.11371908.v1
title: Table S1 from Egg incubation temperature does not influence adult heat tolerance in the lizard <i>Anolis sagrei</i>

description: Lizard data
DOI: 10.6084/m9.figshare.27931131.v1
title: Open-source Raman spectra of chemical compounds for active pharmaceutical ingredient development

description: A Raman spectral dataset comprising 3,510 spectra from 32 chemical substances. This dataset includes organic solvents and reagents commonly used in API development, along with information regarding the products in the XLSX, and code to visualise and perform technical validation on the data.
DOI: 10.6084/m9.figshare.13253837.v1
title: Tetraclinis articulata chorology

description: Distribution map of Barbary thuja (<i>Tetraclinis articulata</i>)<br><br>These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geo-databases, scientific and grey literature.<br>The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix "plg"), which define continuous areas of occupancy of the species, and with point features (name suffix "pnt"), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix "syn").<br>Polygon borders delimiting species ranges are generalized across the mainland and sea boundaries. This offers the possibility to mask sea areas or to clip and extract the terrestrial range parts using GIS data layers of the users' choice. An additional version of polygon ranges are clipped with a coastline (name suffix "clip"), which have been derived from Natural Earth dataset "Admin 0 - Countries" 1:50M version 4.1.0 (https://www.naturalearthdata.com).<br><br>Please cite as:<br>Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007<br><br>Additional information and used references are on 'supplementary materials' document:<br>https://doi.org/10.6084/m9.figshare.5091901<br><br>Chorological maps are part of the "European Atlas of Forest Tree Species" project:<br>https://w3id.org/mtv/FISE-Comm/v01
DOI: 10.6084/m9.figshare.25035959.v1
title: Tables Raw Data

description: A multicenter cross-sectional design study was conducted on 120 cancer patients aged at least 18 who had been undergoing at least one round of chemotherapy. TAs were evaluated using the chemotherapy-induced taste alteration scale (CiTAS), the malnutrition universal screening tool (MUST) was used for nutritional screening, the antineoplastic side effects scale (ASES) was used for subjective assessment of chemotherapy side effects, and the Charlson comorbidity index (CCI) was used for comorbidity assessment. SPSS21 software was used to analyze the data, and the independent T-test and one-way ANOVA test were used to determine the association between TAs and a variety of related variables.
DOI: 10.6084/m9.figshare.6633983.v1
title: MIProblems: A repository of multiple instance learning datasets

description: This repository contains the multiple instance learning datasets previously stored at miproblems.org. As I am now longer maintaining the website, I moved the datasets to Figshare. A detailed description of the files is found in readme.pdf<br> If you use these datasets, please cite this Figshare resource rather than linking to miproblems.org, which will be offline soon.
DOI: 10.6084/m9.figshare.28710638.v1
title: Stitcher API responses (4/1/2025)

description: The latest set of stitcher API responses, as of 4/1/2025.<br>https://stitcher.ncats.io/<br>https://github.com/ncats/stitcher<br>Stitcher is software for the ingestion and semantic normalization of datasets. Stitcher employs entity resolution algorithms to partition entities within a given dataset into disjoint sets such that those within the same set are considered equivalent. The dataset here is stitched data for chemical substances.
DOI: 10.6084/m9.figshare.25126169.v1
title: <b>Quality-preserving multilevel mesh generation for building models</b>

description: <b>Data Description:</b>This dataset contains all the original input data and result data from our experiments.The result data include Comparison with commercial software, Comparison with academic approaches, Comparison with alternative pipeline。
DOI: 10.6084/m9.figshare.25953868.v1
title: scIB pancreas dataset

description: scIB pancreas dataset used for benchmarking feature selection for integration in H5AD format. Files contain the full raw dataset, the processed batches used to create the reference and the processed batches used as a query.Note: These files have been saved with compression to reduce file size. Re-saving without compression will reduce reading times if needed.If used, please cite:<br>Luecken MD, Büttner M, Chaichoompu K, Danese A, Interlandi M, Mueller MF, et al. Benchmarking atlas-level data integration in single-cell genomics. Nat Methods. 2021; Available from: http://dx.doi.org/10.1038/s41592-021-01336-8
DOI: 10.6084/m9.figshare.28696295.v2
title: Source files for supplementary figures 1-16

description: Source files for supplementary figures 1-16
DOI: 10.6084/m9.figshare.19158206.v1
title: Greenhouse gas emissions of wastewater treatment plants in China from 2006 to 2019

description: This work constructed a high-resolution (firm-level) and time series (from 2006 to 2019) GHG emission inventory of wastewater treatment plants (WWTPs) in China. Three GHG were estimated in this research, i.e., CO<sub>2</sub>, N<sub>2</sub>O and CH<sub>4</sub>. Emission sources include on-site emissions from biological treatment processes and off-site emissions from energy consumption and discharge pathways of the WWTP. We distinguished between 10 potential pathways. To account for the different emission potentials of different treatment technologies, we calculated emissions based on 48 separate biological, physical, chemical and physicochemical technologies and their combinations. GHG emission factors of different biological treatment technologies in line with China’s conditions were obtained from the literature.
DOI: 10.6084/m9.figshare.25999900.v2
title: Performance_011919.mat

description: Data structure from the performance done on 01/19/19.
DOI: 10.6084/m9.figshare.28705559.v3
title: BTS: Building Timeseries Dataset: Raw

description: The Building TimeSeries (BTS) dataset covers three buildings over a three-year period, comprising more than ten thousand timeseries data points with hundreds of unique Brick classes. Moreover, the metadata is standardized using the Brick schema.To get started, download the data and run the DIEF_inspect_raw.ipynb file.For more info, including data cards: https://github.com/cruiseresearchgroup/DIEF_BTS
DOI: 10.17632/ntjy37jwf3
title: Morphometric and geometric morphometric data of Cichlidogyrus casuarinus

description: The morphometric and geometric morphometric data underlying results of the article Kmentová N., Hahn C., Koblmüller S., Zimmerman H., Vorel J., Artois T., Gelnar M., Vanhove M.P.M., Contrasting host-parasite population structure: morphology and mitogenomics of a parasitic flatworm on pelagic deepwater cichlid fishes from Lake Tanganyika. Biology 2021, 10(8), 797; https://doi.org/10.3390/biology10080797.
DOI: 10.6084/m9.figshare.11565300.v1
title: MOESM1 of Transcription-independent TFIIIC-bound sites cluster near heterochromatin boundaries within lamina-associated domains in C. elegans

description: Additional file 1. TFIIIC-binding sites.
DOI: 10.6084/m9.figshare.25981450.v17
title: 2020-2021 Changjiang estuary dissolved oxygen isotopic compositions and results of Monte-Carlo Mixing experiment

description: Understanding the complex processes driving oxygen depletion is challenging. The nonlinear relationship between dissolved oxygen (DO) isotopic composition (δ<sup>18</sup>O ) and its concentration makes δ<sup>18</sup>O a unique tracer for studying O2 cycling in oxygen depletion zones. Based on the DO δ<sup>18</sup>O compositions from four cruises conducted from summer 2020 to spring 2021 in the Changjiang Estuary, we identified a dynamic northern oxygen depletion zone (NODZ) with seasonally varying DO δ<sup>18</sup>O values, and a relatively stable southern oxygen depletion zone (SODZ). To quantify the contributions of low oxygen water mixing and respiration to oxygen depletion, we conducted a Monte-Carlo mixing experiment involving high salinity and low oxygen water (HSLO) and mixed layer water (MLW). Our findings indicated that during summer of 2020, HSLO mixing contributed to 59% to 100% of oxygen deficit in oxygen depletion zones, with SODZ exhibiting a HSLO mixing contribution of more than 78%. Respiration contributed to the remaining oxygen deficit, with water column respiration consuming approximately 2.5 times more oxygen than sediment oxygen consumption. In the NODZ, oxygen depletion was further enhanced by water column stratification, respiration and seafloor topography. Overall, the influx of HSLO was a key trigger for oxygen depletion in the Changjiang Estuary. The spatial and temporal variations of the two oxygen depletion zones were closely linked to the intrusion and retreat of HSLO from summer to autumn. Our findings highlight the importance of utilizing DO δ<sup>18</sup>O to differentiate and quantify biological and physical processes in coastal oxygen depletion zones.File description：Table S1: Data for this study, including latitude and longitude, sampling depth, temperature, salinity, δO<sub>2</sub>/Ar,δ<sup>18</sup>O,[O<sub>2</sub>],[O<sub>2</sub>]/[O<sub>2</sub>]<sub>sat</sub>, densityTable S3: The results of Monte-Carlo mixing experiments in all samples beneath mixed layer: the fraction of HSLO in different water masses, [O<sub>2</sub>] and δ<sup>18</sup>O after mixing from Monte-Carlo mixing experiment. Oxygen depletion caused by mixing and total oxygen depletion. The contribution of mixing and respiration to oxygen deficit. The apparent respiration fractionation factor and the proportion of WCR and SOC to oxygen deficit as well as the observed salinity, [O<sub>2</sub>] and δ<sup>18</sup>O beneath the mixed layer<br><br>
DOI: 10.6084/m9.figshare.4249400.v1
title: HCP-MMP1.0 volumetric (NIfTI) masks in native structural space

description: We in our group received with great interest the publication of the HCP-MMP1.0 parcellation by Glasser et al. (Nature) created using data from the Human Connectome Project earlier this year. Often in our connectivity pipelines we use volume files for parcellation in native space, so we decided to try and convert the Connectome Workbench files to volume masks in native structural space to try out in future studies.<br>We were happy to find that someone had already gone through the trouble of generating FreeSurfer annotation files projected on fsaverage, so all we had to do was find a way to transform these <i>annot</i> files to each subject’s space and convert them to volume masks.<br>So we wrote this Linux shell script that performs a series of conversion and transformation steps using only FreeSurfer commands. It first converts the annotation files (<b>lh.HCPMMP1.annot and rh.HCPMMP1.annot</b>, downloaded from https://figshare.com/articles/HCP-MMP1_0_projected_on_fsaverage/3498446) to labels using <i>mri_annotation2label</i>, then takes each label from fsaverage to each subject’s space with <i>mri_label2label</i>, converts transformed labels back to annotation with <i>mri_label2annot</i>, and finally converts these to volume files (nii.gz) with <i>mris_label2annot</i>. Seems like too many steps, but this is how we (who are not FreeSurfer experts) got satisfactory results.<br>The default final file consists of a single volume containing the HCP-MMP1.0 regions plus the subcortical regions from the FreeSurfer segmentation, each assigned a unique voxel value. Left-hemisphere cortical HCP-MMP1.0 regions have values between 1001 and 1181, whereas right-sided regions have values between 2001 and 2181. The correspondence between each specific region and its value is given in a look-up table that is generated in each subject’s output folder. To identify the subcortical regions, one just needs to check the <i>FreeSurferColorLUT.txt</i> file provided with FreeSurfer, as they correspond to the original <i>aseg</i> parcellation.<br>Optionally, one can choose to also generate individual volume files for each parcellation region. This option requires FSL, and will only create masks for the cortical HCP-MMP1.0 parcellation, not the subcortical aseg regions.<br>Instructions on how to use the script can be found in the file itself, or here: https://cjneurolab.org/2016/11/22/hcp-mmp1-0-volumetric-nifti-masks-in-native-structural-space/<br>Hope this can be of use!
DOI: 10.6084/m9.figshare.6849590.v2
title: dbf files for ipcmaps

description: map data for ipcmaps<br>
DOI: 10.17632/2jxt6wr2p2
title: The effects of dimethyl sulfoxide on Gardnerella vaginalis biofilm inhibition and eradication

description: This study examines dimethyl sulfoxide's (DMSO) biofilm inhibitory effects, biofilm eradication effects, and the minimum inhibitory concentration on Gardnerella vaginalis at different concentrations of DMSO using two-fold serial dilutions (50% - 0.10%) in 96-well microplates. This file provides the raw data (absorbance values, OD 595) from assays run in triplicate on separate days with 8 technical replicates each. Biofilms were stained using the crystal violet method. Absorbance values from the 3 runs were averaged and the average absorbance value from the media control (negative growth control wells) was subtracted from the averages of the growth control and DMSO treatment wells. Percent inhibition was then calculated by comparing the absorbance of the DMSO treatment wells to the growth control (0% DMSO) well.
DOI: 10.6084/m9.figshare.1417577.v1
title: Image Generation Maintenace

description: This research examined the development of image maintenance and image generation abilities in 4- to 10-year-old children and adults.
DOI: 10.6084/m9.figshare.14423195.v1
title: Table S2

description: Table S2. A list of the genes present or absent in strains Rupite and JA-2-3B’a (2-13).