cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0173685.10fu
title: SH0173685.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0173686.10fu
title: SH0173686.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0173687.10fu
title: SH0173687.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0173688.10fu
title: SH0173688.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0173689.10fu
title: SH0173689.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0173690.10fu
title: SH0173690.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0173691.10fu
title: SH0173691.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.2r2xsh
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Phrynocephalus forsythii Anderson, 1872"
 ]
}

 The dataset includes 110 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023006-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9eeqpc
title: Occurrence Download

description: A dataset containing 2697 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Panthera pardus (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2697 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009908-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zkvg9z
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Hypericum hartwegii Benth."
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078633-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5d4fy
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kuwait",
 "TaxonKey is Ogastemma pusillum (Coss. & Durieu ex Bonnet & Barratte) Brummitt"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033032-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lxkjty
title: Occurrence Download

description: A dataset containing 1874 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-98.03065 23.25824,-47.26506 23.25824,-47.26506 43.55492,-98.03065 43.55492,-98.03065 23.25824))",
 "HasCoordinate is true",
 "TaxonKey is Malaclemys terrapin (Schoepff, 1793)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1874 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005942-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrbk6s
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Megachile disjunctiformis Cockerell, 1911"
 ]
}

 The dataset includes 91 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078640-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x88ump
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kuwait",
 "TaxonKey is Oligomeris linifolia (Vahl ex Hornem.) J.F.Macbr."
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033033-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y0pe50
title: Occurrence Download

description: A dataset containing 15528 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-12.52734 -1.58203,0.83203 -0.87891,15.24609 -36.58594,21.73828 -36.65625,43.88672 -33.14063,49.86328 -29.27344,74.57813 48.02344,31.93359 43.85156,-2.98828 38.84766,-17.44922 33.92578,-20.80078 13.26562,-12.52734 -1.58203))",
 "TaxonKey is Leporidae"
 ]
}

 The dataset includes 15528 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005942-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ghr94
title: Occurrence Download

description: A dataset containing 203 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leontopithecus chrysomelas (Kuhl, 1820)"
 ]
}

 The dataset includes 203 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057632-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t6hbeh
title: Occurrence Download

description: A dataset containing 231 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Japan",
 "Country is China",
 "Country is Korea, Republic of"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Megachile sculpturalis Smith, 1853"
 ]
}

 The dataset includes 231 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078648-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ohws2g
title: Occurrence Download

description: A dataset containing 4918 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cedrela odorata L."
 ]
}

 The dataset includes 4918 records from 277 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005942-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vzuzjn
title: Occurrence Download

description: A dataset listing the 25 species recorded in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-117.75531 33.75128,-117.75758 33.74869,-117.75358 33.74538,-117.75093 33.74911,-117.75531 33.75128))"
 ]
}

 The dataset's 25 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111446-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3myp9y
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Osmanthus fordii Hemsl."
 ]
}

 The dataset includes 14 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042989-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ag6rc
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "MediaType is Image",
 "Geometry POLYGON((120.59378 30.23124,123.04943 30.23124,123.04943 32.33195,120.59378 32.33195,120.59378 30.23124))",
 "HasCoordinate is true",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 109 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018477-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bmp62q
title: Occurrence Download

description: A dataset containing 81364 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is Northern Cape",
 "TaxonKey is Arthropoda"
 ]
}

 The dataset includes 81364 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014936-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27611139
title: Additional file 9 of Comparative genomics of Plasmodium yoelii nigeriensis N67 and N67C: genome-wide polymorphisms, differential gene expression, and drug resistance

description: Supplementary Material 9: Table S9. Predicted gene families and copy numbers in four Plasmodium yoelii parasites: P. y. yoelii 17X, P. y. yoelii YM, P. y. nigeriensis N67, and P. y. nigeriensis N67C.
DOI: 10.6084/m9.figshare.27611118.v1
title: Additional file 3 of Comparative genomics of Plasmodium yoelii nigeriensis N67 and N67C: genome-wide polymorphisms, differential gene expression, and drug resistance

description: Supplementary Material 3: Table S3. Predicted Plasmodium yoelii nigeriensis N67 gene and protein sequences with quality statistics and orthologs of P. y. yoelii 17X, P. y. yoelii YM, P. y. nigeriensis N67C, and Plasmodium falciparum.
DOI: 10.6084/m9.figshare.27611139.v1
title: Additional file 9 of Comparative genomics of Plasmodium yoelii nigeriensis N67 and N67C: genome-wide polymorphisms, differential gene expression, and drug resistance

description: Supplementary Material 9: Table S9. Predicted gene families and copy numbers in four Plasmodium yoelii parasites: P. y. yoelii 17X, P. y. yoelii YM, P. y. nigeriensis N67, and P. y. nigeriensis N67C.
DOI: 10.6084/m9.figshare.27611145
title: Additional file 2 of Removal of sequencing adapter contamination improves microbial genome databases

description: Supplementary Material 2: Table S2. Differences in N50 resulting from adapter removal. Table shows MAGs display increases in N50 values after adapter removal compared to before adapter removal.
DOI: 10.6084/m9.figshare.27611145.v1
title: Additional file 2 of Removal of sequencing adapter contamination improves microbial genome databases

description: Supplementary Material 2: Table S2. Differences in N50 resulting from adapter removal. Table shows MAGs display increases in N50 values after adapter removal compared to before adapter removal.
DOI: 10.6084/m9.figshare.27611127
title: Additional file 5 of Comparative genomics of Plasmodium yoelii nigeriensis N67 and N67C: genome-wide polymorphisms, differential gene expression, and drug resistance

description: Supplementary Material 5: Table S5. Polymorphic sites between the Plasmodium yoelii nigeriensis N67C and N67 parasites with corresponding IDs and predicted gene functions for the four P. yoelii parasites: N67C, N67, 17X, and YM.
DOI: 10.6084/m9.figshare.27611133
title: Additional file 7 of Comparative genomics of Plasmodium yoelii nigeriensis N67 and N67C: genome-wide polymorphisms, differential gene expression, and drug resistance

description: Supplementary Material 7: Table S7. Annotated ortholog groups among the four Plasmodium yoelii parasites (17X, YM, N67C, and N67).
DOI: 10.6084/m9.figshare.27611142
title: Additional file 1 of Removal of sequencing adapter contamination improves microbial genome databases

description: Supplementary Material 1: Table S1. Results of analyses of adapter enrichment.
DOI: 10.6084/m9.figshare.27611136
title: Additional file 8 of Comparative genomics of Plasmodium yoelii nigeriensis N67 and N67C: genome-wide polymorphisms, differential gene expression, and drug resistance

description: Supplementary Material 8: Table S8. GO-term enrichment of genes that are 100% conserved between Plasmodium yoelii nigerinesis N67C and P. y. yoelii 17X.
DOI: 10.6084/m9.figshare.27611178
title: Additional file 7 of Phlebotomine sand fly survey, blood meal source identification, and description of Sergentomyia imihra n. sp. in the central Sahara of Algeria

description: Additional file 7: Table S5. Peptide mass mapping MALDI-TOF MS identification of blood meal origin of engorged females.
DOI: 10.6084/m9.figshare.27611124.v1
title: Additional file 4 of Comparative genomics of Plasmodium yoelii nigeriensis N67 and N67C: genome-wide polymorphisms, differential gene expression, and drug resistance

description: Supplementary Material 4: Table S4. Differentially expressed single-copy genes (DEGs) between Plasmodium yoelii nigeriensis N67 and N67C.
DOI: 10.6084/m9.figshare.27611217.v1
title: Additional file 2 of Shared and unique patterns of autonomous human endogenous retrovirus loci transcriptomes in CD14 + monocytes from individuals with physical trauma or infection with COVID-19

description: Supplementary Material 2
DOI: 10.15468/dl.pvqkax
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"10770812","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022307-241024112534372/datasets/export for details.
DOI: 10.6084/m9.figshare.27611178.v1
title: Additional file 7 of Phlebotomine sand fly survey, blood meal source identification, and description of Sergentomyia imihra n. sp. in the central Sahara of Algeria

description: Additional file 7: Table S5. Peptide mass mapping MALDI-TOF MS identification of blood meal origin of engorged females.
DOI: 10.6084/m9.figshare.27611112
title: Additional file 1 of Comparative genomics of Plasmodium yoelii nigeriensis N67 and N67C: genome-wide polymorphisms, differential gene expression, and drug resistance

description: Supplementary Material 1: Table S1. Quality control statistics of RNA-Seq samples from mixed blood stages of Plasmodium yoelii nigeriensis N67 and N67C parasites.
DOI: 10.6084/m9.figshare.27611217
title: Additional file 2 of Shared and unique patterns of autonomous human endogenous retrovirus loci transcriptomes in CD14 + monocytes from individuals with physical trauma or infection with COVID-19

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.27611127.v1
title: Additional file 5 of Comparative genomics of Plasmodium yoelii nigeriensis N67 and N67C: genome-wide polymorphisms, differential gene expression, and drug resistance

description: Supplementary Material 5: Table S5. Polymorphic sites between the Plasmodium yoelii nigeriensis N67C and N67 parasites with corresponding IDs and predicted gene functions for the four P. yoelii parasites: N67C, N67, 17X, and YM.
DOI: 10.6084/m9.figshare.27611133.v1
title: Additional file 7 of Comparative genomics of Plasmodium yoelii nigeriensis N67 and N67C: genome-wide polymorphisms, differential gene expression, and drug resistance

description: Supplementary Material 7: Table S7. Annotated ortholog groups among the four Plasmodium yoelii parasites (17X, YM, N67C, and N67).
DOI: 10.6084/m9.figshare.27611142.v1
title: Additional file 1 of Removal of sequencing adapter contamination improves microbial genome databases

description: Supplementary Material 1: Table S1. Results of analyses of adapter enrichment.
DOI: 10.6084/m9.figshare.27611192
title: Additional file 2 of Clinical characteristics and short-term outcomes of patients with critical acute pulmonary embolism requiring extracorporeal membrane oxygenation: from the COMMAND VTE Registry-2

description: Additional file 2.