cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5vm4399m
title: MassIVE MSV000100035 - A repressor-activator bridging protein drives transcription factor binding to HDAC/Rpd3L
title: Phenotypic characterization of members of Rpd3L demonstrate the importance of peripheral components including transcriptional repression and activation. To characterize these components, endogenous yeast Rpd3L complex was purified using three baits: Rxt3Tap, Sap30Tap, and Sin3Tap. Cryo-EM structures were acquired on each bait. Taking the Sap30Tap purification, enrichment and crosslinking analysis was performed using mass spectrometry. Integrating this data allowed for an integrated structural model to expand the structure from the cryo-EM core of Rpd3L to a complete model of Rpd3L including its incorporation of Ash1 and Cti6. Further integration of fragment-fragment interaction mapping and crystal structures at the interface of Sin3 PAH2 and Ume6 SID allowed for the incorporation of Ume6. A mutagenesis screen further verified specific residues that are essential for the interaction of Sin3 to Ume6 and Sin3 to Sap30.
DOI: 10.15468/dl.29y3fp
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA.16_1",
 "TaxonKey is Geonoma schottiana"
 ]
}

 The dataset includes 77 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010322-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.20383/103.01100
title: A long-term water quality and meteorological data set (2014 – 2021) of a eutrophic prairie lake: Buffalo Pound Lake, Saskatchewan, Canada

description: Lakes can undergo rapid changes that are not captured during traditional, discrete sampling campaigns. Sensor-based data provided opportunities to understand these rapid changes in lakes. Here, we present 8 years of sensor-based monitoring data from the open water season in a shallow, polymictic reservoir in southern Saskatchewan, which serves as an important drinking water supply. A monitoring buoy was moored at a single location, providing sensor data, including water temperature, photosynthetically available radiation (PAR), pH, dissolved oxygen, specific conductivity, turbidity, phycocyanin and chlorophyll at 2 depths (0.8 and 2.8 m below surface), and temperature throughout the water column, at 10-minute intervals timeframe. The buoy also had a weather station, recording air temperature, barometric pressure, PAR, rain, relative humidity, wind direction and wind speed. Data were reviewed and graded for data quality. This long-term dataset can be used to understand thermal variation and varied, often rapid, changes that polymictic lakes undergo, particularly through seasonal changes and development of cyanobacterial blooms.
DOI: 10.48597/r4zv-46qj
title: Measurement of Heavy metals at Guipry

description: Measurement of Heavy metals at Guipry
DOI: 10.48597/r5hz-sss5
title: Measurement of Nitrogen_dioxide at Rigi

description: Measurement of Nitrogen_dioxide at Rigi
DOI: 10.48597/rn6m-swg9
title: Measurement of Heavy metals at Revin

description: Measurement of Heavy metals at Revin
DOI: 10.48597/rprs-dbtm
title: Measurement of Ozone at Revin

description: Measurement of Ozone at Revin
DOI: 10.6084/m9.figshare.11531760
title: MOESM10 of Genetic regulatory networks for salt-alkali stress in Gossypium hirsutum with differing morphological characteristics

description: Additional file 10: Table S6. The hub genes of each tissue/stage-specific module.
DOI: 10.48597/rs34-ck37
title: Measurement of OC/EC at Birkenes II

description: Measurement of OC/EC at Birkenes II
DOI: 10.6084/m9.figshare.11531760.v1
title: MOESM10 of Genetic regulatory networks for salt-alkali stress in Gossypium hirsutum with differing morphological characteristics

description: Additional file 10: Table S6. The hub genes of each tissue/stage-specific module.
DOI: 10.48597/spzr-hb8c
title: Measurement of OC/EC at Birkenes II

description: Measurement of OC/EC at Birkenes II
DOI: 10.48597/sxja-zxeu
title: Measurement of Nitrogen_monoxide at Jungfraujoch

description: Measurement of Nitrogen_monoxide at Jungfraujoch
DOI: 10.48597/tc4c-96r5
title: Measurement of Inorganics in precipitation at Peyrusse Vieille

description: Measurement of Inorganics in precipitation at Peyrusse Vieille
DOI: 10.48597/tfyb-3qsp
title: Measurement of Pm10_mass at Saint-Nazaire-le-Désert

description: Measurement of Pm10_mass at Saint-Nazaire-le-Désert
DOI: 10.48597/tnbf-cy9j
title: Measurement of Heavy metals at Peyrusse Vieille

description: Measurement of Heavy metals at Peyrusse Vieille
DOI: 10.48597/tvyp-ndmf
title: Measurement of Ozone at Revin

description: Measurement of Ozone at Revin
DOI: 10.48597/tzw5-js6r
title: Measurement of Pm25_mass at La Coulonche

description: Measurement of Pm25_mass at La Coulonche
DOI: 10.48597/uaht-9evn
title: Measurement of Heavy metals at Verneuil

description: Measurement of Heavy metals at Verneuil
DOI: 10.48597/vqtc-dkyk
title: Measurement of Ozone at Morvan

description: Measurement of Ozone at Morvan
DOI: 10.48597/vu3p-kxgy
title: Measurement of Pm25_mass at Revin

description: Measurement of Pm25_mass at Revin
DOI: 10.48597/vyqq-fywg
title: Measurement of Pm10_mass at Stará Lesná

description: Measurement of Pm10_mass at Stará Lesná
DOI: 10.48597/w6va-zjs6
title: Measurement of Heavy metals at Revin

description: Measurement of Heavy metals at Revin
DOI: 10.48597/w7zk-fp9k
title: Measurement of Heavy metals at Peyrusse Vieille

description: Measurement of Heavy metals at Peyrusse Vieille
DOI: 10.48597/w99a-u58v
title: Measurement of Pm10_mass at Guipry

description: Measurement of Pm10_mass at Guipry
DOI: 10.48597/x66n-jxyf
title: Measurement of Potassium at Oak Park

description: Measurement of Potassium at Oak Park
DOI: 10.48597/xnw8-xxun
title: Measurement of OC/EC at Hurdal

description: Measurement of OC/EC at Hurdal
DOI: 10.48597/xp4k-wspb
title: Measurement of OC/EC at Hurdal

description: Measurement of OC/EC at Hurdal
DOI: 10.48597/ybs9-5fdy
title: Measurement of Pm25_mass at Peyrusse Vieille

description: Measurement of Pm25_mass at Peyrusse Vieille
DOI: 10.5281/zenodo.10351138
title: Non-Perennial rivers and streams under hydrological stress – comparing the effectiveness of amplicon sequencing and digital microscopy for diatom biodiversity appraisal

description: ABC is project leader, data collector, contact person, etc.
DOI: 10.5281/zenodo.10351139
title: Non-Perennial rivers and streams under hydrological stress – comparing the effectiveness of amplicon sequencing and digital microscopy for diatom biodiversity appraisal

description: ABC is project leader, data collector, contact person, etc.
DOI: 10.25446/oxford.25335172
title: Belgium - Regional Human Capital Data

description: This dataset includes information on local levels of educational attainment in Belgium based on census data.
DOI: 10.25446/oxford.25335172.v1
title: Belgium - Regional Human Capital Data

description: This dataset includes information on local levels of educational attainment in Belgium based on census data.
DOI: 10.6084/m9.figshare.11531766
title: MOESM11 of Genetic regulatory networks for salt-alkali stress in Gossypium hirsutum with differing morphological characteristics

description: Additional file 11: Table S7. GO enrichment of each tissue/stage-specific modules.
DOI: 10.6084/m9.figshare.11531766.v1
title: MOESM11 of Genetic regulatory networks for salt-alkali stress in Gossypium hirsutum with differing morphological characteristics

description: Additional file 11: Table S7. GO enrichment of each tissue/stage-specific modules.
DOI: 10.6084/m9.figshare.11531775
title: MOESM12 of Genetic regulatory networks for salt-alkali stress in Gossypium hirsutum with differing morphological characteristics

description: Additional file 12: Table S8. List of primers used for RT-qPCR and VIGS.
DOI: 10.6084/m9.figshare.11531775.v1
title: MOESM12 of Genetic regulatory networks for salt-alkali stress in Gossypium hirsutum with differing morphological characteristics

description: Additional file 12: Table S8. List of primers used for RT-qPCR and VIGS.
DOI: 10.6084/m9.figshare.19396105
title: Additional file 7 of Phosphorylation regulation of cardiac proteins in Babesia microti infected mice in an effort to restore heart function

description: Additional file 7: Table S1. The raw data of global proteins identified at different stages.
DOI: 10.6084/m9.figshare.19396105.v1
title: Additional file 7 of Phosphorylation regulation of cardiac proteins in Babesia microti infected mice in an effort to restore heart function

description: Additional file 7: Table S1. The raw data of global proteins identified at different stages.
DOI: 10.6084/m9.figshare.23590396
title: Additional file 3 of Complete chloroplast genome structural characterization of two Phalaenopsis (Orchidaceae) species and comparative analysis with their alliance

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.23590405
title: Additional file 6 of Complete chloroplast genome structural characterization of two Phalaenopsis (Orchidaceae) species and comparative analysis with their alliance

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.23590405.v1
title: Additional file 6 of Complete chloroplast genome structural characterization of two Phalaenopsis (Orchidaceae) species and comparative analysis with their alliance

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.23590396.v1
title: Additional file 3 of Complete chloroplast genome structural characterization of two Phalaenopsis (Orchidaceae) species and comparative analysis with their alliance

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.23590399
title: Additional file 4 of Complete chloroplast genome structural characterization of two Phalaenopsis (Orchidaceae) species and comparative analysis with their alliance

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.23590399.v1
title: Additional file 4 of Complete chloroplast genome structural characterization of two Phalaenopsis (Orchidaceae) species and comparative analysis with their alliance

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.23590402
title: Additional file 5 of Complete chloroplast genome structural characterization of two Phalaenopsis (Orchidaceae) species and comparative analysis with their alliance

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.23590402.v1
title: Additional file 5 of Complete chloroplast genome structural characterization of two Phalaenopsis (Orchidaceae) species and comparative analysis with their alliance

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.19396108
title: Additional file 8 of Phosphorylation regulation of cardiac proteins in Babesia microti infected mice in an effort to restore heart function

description: Additional file 8: Table S2. Information of intersecting global proteins used for cluster analysis.
DOI: 10.6084/m9.figshare.19396108.v1
title: Additional file 8 of Phosphorylation regulation of cardiac proteins in Babesia microti infected mice in an effort to restore heart function

description: Additional file 8: Table S2. Information of intersecting global proteins used for cluster analysis.
DOI: 10.34808/fx5a-cp08
title: Thermgravimetric analysis (TGA) data of cement pastes containing pristine and silica-coated bismuth oxide and gadolinium oxide particles

description: Thermogravimetric (TGA) data of cement pastes after 2, 7 and 28 days. Samples designations: Control, BG, BG-A and BG-B are associated with the specimen names in the associated publication.
Control - Pristine Portland cement paste
BG - Cement paste containing 10 wt% replacement of cement with Bi2O3+Gd2O3 structures
BG-A -  Cement paste containing 10 wt% replacement of cement with silica-coated Bi2O3+Gd2O3 (synthesis method A) structures
BG-B -  Cement paste containing 10 wt% replacement of cement with silica-coated Bi2O3+Gd2O3 (synthesis method B) structures
Thermogravimetric analysis (TGA) of cement pastes after 2 d, 7 d and 28 d of curing was performed using TA Instruments 5500 in nitrogen, with a heat rate 10 °C/min, up to 1000 °C. To perform the measurement, the cubic specimens were crushed and immersed in the solvent (isopropanol) to stop the hydration process for 1 h. Afterward, the material was dried using a vacuum dryer (40 °C) and milled to fine powder. 
Each folder contains raw data in *.tri format accesible using Trios software (5.4.0.300) - https://www.tainstruments.com/support/software-downloads-support/downloads/ and *.txt file
DOI: 10.5281/zenodo.10776690
title: Dataset to accompany publication "A meta-regression analysis on judicial efficiency literature: the role of methodological and courts diversity"

description: This Dataset accompanies the publication Aiello, F., Bonanno, G., & Foglia, F. (2024). A meta-regression analysis on judicial efficiency literature: the role of methodological and courts diversity. Journal of Applied Economics, 27(1), 2284010 [free available at the following link: https://www.tandfonline.com/doi/full/10.1080/15140326.2023.2284010]. Data included can be used to run other Meta-Regression Analyses on the literature of judicial efficiency. Proper citation of the original papers is mandatory when using the dataset.

The file is in an Excel spreadsheet (.csv) and easily readable.

Here, the abstract for the related paper:

This study reviews the empirical literature on judicial efficiency by conducting a meta-regression analysis. The metadata set comprises 264 efficiency scores retrieved from 36 papers published from 1992 to 2019. While the role of study design and method-specific characteristics of primary studies is evaluated, a focus also concerns courts specialisation. The results are fourfold. First, it is proven that primary papers using parametric methods yield higher efficiency scores than non-parametric studies. This is a key result, as the massive use of Data Envelopment Analysis (DEA) leads courts to be perceived as less efficient than they are. Second, the efficiency score of primary papers decreases, on average, when the sample size and the sum of inputs and outputs increase. Third, the efficiency scores obtained in studies that analyse first-instance courts are significantly higher than those obtained in studies that analyse appeal courts. Finally, primary papers focusing on a specific court type (only tax, civil or criminal) yield efficiency scores that are, on average, higher than those obtained in studies where the analysed courts are mixed. Some checks are performed to assure the robustness of the results.
DOI: 10.5281/zenodo.10776691
title: Dataset to accompany publication "A meta-regression analysis on judicial efficiency literature: the role of methodological and courts diversity"

description: This Dataset accompanies the publication Aiello, F., Bonanno, G., & Foglia, F. (2024). A meta-regression analysis on judicial efficiency literature: the role of methodological and courts diversity. Journal of Applied Economics, 27(1), 2284010 [free available at the following link: https://www.tandfonline.com/doi/full/10.1080/15140326.2023.2284010]. Data included can be used to run other Meta-Regression Analyses on the literature of judicial efficiency. Proper citation of the original papers is mandatory when using the dataset.

The file is in an Excel spreadsheet (.csv) and easily readable.

Here, the abstract for the related paper:

This study reviews the empirical literature on judicial efficiency by conducting a meta-regression analysis. The metadata set comprises 264 efficiency scores retrieved from 36 papers published from 1992 to 2019. While the role of study design and method-specific characteristics of primary studies is evaluated, a focus also concerns courts specialisation. The results are fourfold. First, it is proven that primary papers using parametric methods yield higher efficiency scores than non-parametric studies. This is a key result, as the massive use of Data Envelopment Analysis (DEA) leads courts to be perceived as less efficient than they are. Second, the efficiency score of primary papers decreases, on average, when the sample size and the sum of inputs and outputs increase. Third, the efficiency scores obtained in studies that analyse first-instance courts are significantly higher than those obtained in studies that analyse appeal courts. Finally, primary papers focusing on a specific court type (only tax, civil or criminal) yield efficiency scores that are, on average, higher than those obtained in studies where the analysed courts are mixed. Some checks are performed to assure the robustness of the results.
DOI: 10.6084/m9.figshare.19396119
title: Additional file 2 of Full-length transcriptome reconstruction reveals genetic differences in hybrids of Oryza sativa and Oryza punctata with different ploidy and genome compositions

description: Additional file 2: Table S1. Functional annotation of transcripts.
DOI: 10.6084/m9.figshare.19396119.v1
title: Additional file 2 of Full-length transcriptome reconstruction reveals genetic differences in hybrids of Oryza sativa and Oryza punctata with different ploidy and genome compositions

description: Additional file 2: Table S1. Functional annotation of transcripts.
DOI: 10.6084/m9.figshare.19396114
title: Additional file 1 of External validation of Pentafecta in patients undergoing laparoscopic radical cystectomy: results from a high-volume center

description: Additional file 1. Raw data.
DOI: 10.6084/m9.figshare.19396114.v1
title: Additional file 1 of External validation of Pentafecta in patients undergoing laparoscopic radical cystectomy: results from a high-volume center

description: Additional file 1. Raw data.
DOI: 10.6084/m9.figshare.9958940.v1
title: A neonatal murine model of coxsackievirus A4 infection for evaluation of vaccines and antiviral drugs

description: Coxsackievirus A4 (CVA4) infection can cause hand, foot and mouth disease (HFMD), an epidemic illness affecting neonatal and paediatric cohorts, which can develop to severe neurological disease with high mortality. In this study, we established the first ICR mouse model of CVA4 infection for the evaluation of inactivated vaccines and antiviral drug screening. The CVA4 YT226R strain was selected to infect the neonatal mice and three infectious factors were optimized to establish the infection model. The 3-day-old neonatal mice exhibited clinical symptoms such as hind limb paralysis and death. The severe inflammatory reactions were closely related to the abnormal expression of the acute phase response proinflammatory cytokine IL-6 and an imbalance in the IFN-γ/IL-4 ratio. Importantly, the inactivated CVA4 whole-virus vaccine induced humoral immune responses in adult females and the maternal antibodies afforded mice complete protection against lethal dose challenges of homologous or heterologous CVA4 strains. Both IFN-α2a and antiserum inhibited the replication of CVA4 and increased the survival rates of neonatal mice during the early stages of infection. This neonatal murine model of CVA4 infection will be useful for the development of prophylactic and therapeutic vaccines and for screening of antiviral drugs targeting CVA4 to decrease morbidity and mortality.
DOI: 10.6084/m9.figshare.19396122
title: Additional file 3 of Full-length transcriptome reconstruction reveals genetic differences in hybrids of Oryza sativa and Oryza punctata with different ploidy and genome compositions

description: Additional file 3: Table S2. Splice junctions and AS modes with different ploidy levels.
DOI: 10.6084/m9.figshare.19396122.v1
title: Additional file 3 of Full-length transcriptome reconstruction reveals genetic differences in hybrids of Oryza sativa and Oryza punctata with different ploidy and genome compositions

description: Additional file 3: Table S2. Splice junctions and AS modes with different ploidy levels.
DOI: 10.6084/m9.figshare.19396125
title: Additional file 4 of Full-length transcriptome reconstruction reveals genetic differences in hybrids of Oryza sativa and Oryza punctata with different ploidy and genome compositions

description: Additional file 4: Table S3. Functional annotation of transcripts in the polyadenylation events.
DOI: 10.6084/m9.figshare.19396125.v1
title: Additional file 4 of Full-length transcriptome reconstruction reveals genetic differences in hybrids of Oryza sativa and Oryza punctata with different ploidy and genome compositions

description: Additional file 4: Table S3. Functional annotation of transcripts in the polyadenylation events.
DOI: 10.6084/m9.figshare.11531814
title: MOESM5 of Genetic regulatory networks for salt-alkali stress in Gossypium hirsutum with differing morphological characteristics

description: Additional file 5: Table S1. Gene ontology (GO) enrichment analysis of DEGs in leaf.
DOI: 10.6084/m9.figshare.11531814.v1
title: MOESM5 of Genetic regulatory networks for salt-alkali stress in Gossypium hirsutum with differing morphological characteristics

description: Additional file 5: Table S1. Gene ontology (GO) enrichment analysis of DEGs in leaf.
DOI: 10.17028/rd.lboro.16774699
title: Supplementary information files for: Machine learning force fields based on local parametrization of dispersion interactions: Application to the phase diagram of C<sub>60</sub>

description: Supplementary files for article: Machine learning force fields based on local parametrization of dispersion interactions: Application to the phase diagram of C<sub>60</sub>.We present a comprehensive methodology to enable the addition of van der Waals (vdW) corrections to machine learning (ML) atomistic force fields. Using a Gaussian approximation potential (GAP) [Bartók et al., Phys. Rev. Lett. 104, 136403 (2010)10.1103/PhysRevLett.104.136403] as a baseline, we accurately machine learn a local model of atomic polarizabilities based on Hirshfeld volume partitioning of the charge density [Tkatchenko and Scheffler, Phys. Rev. Lett. 102, 073005 (2009)10.1103/PhysRevLett.102.073005]. These environment-dependent polarizabilities are then used to parametrize a screened London-dispersion approximation to the vdW interactions. Our ML vdW model only needs to learn the charge density partitioning implicitly by learning the reference Hirshfeld volumes from density functional theory (DFT). In practice, we can predict accurate Hirshfeld volumes from the knowledge of the local atomic environment (atomic positions) alone, making the model highly computationally efficient. For additional efficiency, our ML model of atomic polarizabilities reuses the same many-body atomic descriptors used for the underlying GAP learning of bonded interatomic interactions. We also show how the method enables straightforward computation of gradients of the observables, even when these remain challenging for the reference method (e.g., calculating gradients of the Hirshfeld volumes in DFT). Finally, we demonstrate the approach by studying the phase diagram of C60, where vdW effects are important. The need for a highly accurate vdW-inclusive reactive force field is highlighted by modeling the decomposition of the C60 molecules taking place at high pressures and temperatures.<br>