cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15482/usda.adc/27037855.v1
title: Data from: Laboratory evaluation of two insecticide-incorporated nets for the management of <i>Prostephanus truncatus</i>

description: <i>Insects</i>Adult <i>P. truncatus </i>were obtained from insect colonies kept in the Laboratory of Entomology and Agricultural Zoology (LEAZ), at the Department of Agriculture, Crop Production and Rural Environment, University of Thessaly, Greece, on whole maize kernels, at 26°C and 55% relative humidity (RH) and continuous darkness.<i>Insecticide-Incorporated Netting</i>The experiments were carried out in plastic petri dishes 90 mm in diameter (50.4 cm<sup>2 </sup>bottom surface). The inside of each petri dish was covered with two types of LLIN (0.4% deltamethrin, D-Terrence, Vestergaard INC., Lausanne Switzerland; and 0.34% alpha-cypermethrin, Carifend, BASF Ag, Ludwigshafen, Germany) and a polytetraflurorethylene preparation (Fluon, 60 wt% dispersion in water, Sigma-Aldrich Chemie GmbH, Steinheim, Germany) to prevent insects from escaping. An additional series of dishes with physically identical control netting were prepared without an insecticide treatment to serve as the control. Twenty <i>P. truncatus</i> were then exposed on the insecticide-treated netting in petri dishes for 60, 90, 120, 240 min, 1, 3, and 5 days.<i>Mortality and Recovery</i>After exposure, insects were evaluated for mortality and individual <i>P. truncatus</i> that remained alive or knocked down (not dead) were then place into clean Petri dish arenas with a small amount of clean cracked maize kernels and evaluated for delayed mortality after 7 days. Using a stereomicroscope (SMZ-18, Nikon Inc., Tokyo, Japan) under 60× magnification, <i>P. truncatus</i> were classified as alive (moving normally, is able to right itself when flipped over, no twitching), affected (moving sluggishly or erratically, unable to right itself, twitching of antennae or legs may be present), or dead (completely immobile even after prodding) according to prior published definitions. There were three 3 replicates for each time treatment and netting type and 3 subreplicates for a total of 9 replicates for each treatment combination.<i>Explanation of files</i>The file "Greece Net Data 2023_All" includes the raw mortality ratings, whereas "Greece Net Data 2023_Recovery" includes calculated recovery values by P. truncatus, where recovery was calculated to "alive" from the initial reading (0 d) in "Greece Net Data 2023_All".
DOI: 10.25577/ewt8-ky06
title: Terrain displacement from the Turkiye-Syria earthquakes of February 6,2023 obtained with the GDM-OPT-ETQ service applied on Sentinel-2 optical imagery

description: The region along the East Anatolian Fault (EAF) has a well-known history of seismic activity. On February 6, 2023, two earthquakes of Mw 7.8 and 7.5 had devastating effects on the ground by opening large ruptures and by displacing the earth crust of 5 to 10 m locally. The longer of the two ruptures stretches nearly 300 km in the northeastern direction from the northeastern part of the Mediterranean Sea. The surface rupture was created by the first and most powerful 7.8-magnitude earthquake that triggered at 4:17 am local time; the second surface rupture of 125 km long opened during the second 7.5-magnitude earthquake about nine hours later. By comparing several optical satellite imagery before and after the earthquake, the horizontal displacements of the ground can be calculated using image correlation (also known as offset tracking) techniques. This data release contains co-seismic horizontal displacements obtained from the analysis of Copernicus Sentinel-2 satellite imagery at 10 m spatial resolution. The dataset has been created with the GDM-OPT-ETQ service of the FormaTerre solid Earth data hub using the open source photogrammetry library MicMac. The massive processing was performed on the Geohazard Exploitation Platform (GEP)
DOI: 10.15468/dl.2n9ksw
title: Occurrence Download

description: A dataset containing 1359 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-97.94652 29.20662,-94.70559 29.20662,-94.70559 32.25018,-97.94652 32.25018,-97.94652 29.20662))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sus scrofa Linnaeus, 1758"
 ]
}

 The dataset includes 1359 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027362-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26053480
title: Pan-phylum genomes of hornworts

description: Assembled genomes, coding sequences, protein sequences, gene family phylogenies, and annotation files for 11 hornwort species.Fastas, alignments, alignments_trimmed, and tree files are for each orthogroup (see filenames).
DOI: 10.6084/m9.figshare.26053480.v1
title: Pan-phylum genomes of hornworts

description: Assembled genomes, coding sequences, protein sequences, and annotation files for 11 hornwort species.
DOI: 10.15468/dl.dka985
title: Occurrence Download

description: A dataset containing 22892 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters is less than or equal to 4.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Odocoileus virginianus (Zimmermann, 1780)"
 ]
}

 The dataset includes 22892 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027363-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t8wvfw
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lampsilis powellii (I.Lea, 1852)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON((-118.89159 26.03578,-71.1835 26.03578,-71.1835 48.41528,-118.89159 48.41528,-118.89159 26.03578))"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027364-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8hxkf7
title: Occurrence Download

description: A dataset containing 3650 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Material citation, Material sample)",
 "DatasetKey is one of (MSB Amphibian and Reptile Collection (Arctos), TNHC Herpetology Collection, UTEP Herpetology (Arctos), Distribución potencial de las especies de anfibios y reptiles en categoría de riesgo de México, Arizona State University Herpetology Collection, Biodiversity Research and Teaching Collections - TCWC Vertebrates, Angelo State Natural History Collections (ASNHC) Amphibian and reptile specimens (Arctos), MVZ Herp Collection (Arctos), LACM Vertebrate Collection, CM Herps Collection)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is one of (939ed180-aa7b-11db-8edf-b8a03c50a862, 3c6ad080-bdbe-11da-ac59-b8a03c50a862, ff90b050-c256-11db-b71b-b8a03c50a862, 52c8f620-1816-11da-9544-b8a03c50a862, 814cdfb5-d4f8-4453-815f-ea5df98e76bf, 2b8e48b0-812d-11de-86fe-b8a03c50a862, 9c0a8aa8-4ce7-49ba-aac7-21a97234f886, 8edbbde0-055e-11d8-b850-b8a03c50a862, 493fe050-055d-11d8-b84f-b8a03c50a862, c1da06f0-580e-11dc-8a9e-b8a03c50a862)",
 "TaxonKey is Crotalus atrox Baird & Girard, 1853",
 "Year 1950-2024"
 ]
}

 The dataset includes 3650 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027365-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.chh2mc
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lampsilis powellii (I.Lea, 1852)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON((-118.89159 26.03578,-71.1835 26.03578,-71.1835 48.41528,-118.89159 48.41528,-118.89159 26.03578))"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027366-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ukq8rh
title: Occurrence Download

description: A dataset containing 36515 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxon occurrence data for the FungalRoot database"
 ]
}

 The dataset includes 36515 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027367-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13334193
title: Mobile radar data for 3 cases
DOI: 10.5281/zenodo.13334194
title: Mobile radar data for 3 cases
DOI: 10.6084/m9.figshare.27091969
title: Contractile response parameters of aorta to Sodium Nitroprusside in the presence of potassium channel activators

description: The tables show the contractile response parameters (Emin, Emax, EC50, and pD2) of the aorta to Sodium Nitroprusside in the presence of potassium channel activators (nicorandil, NS1619, and flupirtine). Tissues were treated with cadmium and potassium supplementation.
DOI: 10.6084/m9.figshare.27091969.v1
title: Contractile response parameters of aorta to Sodium Nitroprusside in the presence of potassium channel activators

description: The tables show the contractile response parameters (Emin, Emax, EC50, and pD2) of the aorta to Sodium Nitroprusside in the presence of potassium channel activators (nicorandil, NS1619, and flupirtine). Tissues were treated with cadmium and potassium supplementation.
DOI: 10.15468/dl.qzfx68
title: Occurrence Download

description: A dataset containing 5923 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-75.35968 6.17298,-75.34288 6.12049,-75.31979 6.11279,-75.31489 6.09459,-75.30299 6.09669,-75.30999 6.12469,-75.30929 6.15128,-75.26729 6.16598,-75.24979 6.17018,-75.24839 6.19748,-75.28689 6.25977,-75.29809 6.26117,-75.30859 6.23667,-75.32259 6.23457,-75.32399 6.20168,-75.34638 6.19748,-75.35968 6.17298))"
 ]
}

 The dataset includes 5923 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027368-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9qn2uz
title: Occurrence Download

description: A dataset containing 6847 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "TaxonKey is Cnidaria"
 ]
}

 The dataset includes 6847 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027369-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f3kv9a
title: Occurrence Download

description: A dataset containing 222 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eleocharis uniglumis (Link) Schult.",
 "Year 1897-1901"
 ]
}

 The dataset includes 222 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027370-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10534952
title: Robust optimal control for a systematic error in the control amplitude of transmon qubits

description: Data used in: Robust optimal control for a systematic error in the control amplitude of transmon qubits
DOI: 10.5281/zenodo.12802877
title: Source Data for Manuscript: Identifying genomic data use with the Data Citation Explorer

description: This page contains the source data for the manuscript describing the Data Citation Explorer, currently in review for publication. The preprint version can be found on this page.

Files:

DCE_manual_eval_sample.xlsx:

This file was used to manually evaluate hits generated by the Data Citation Explorer. There are two separate sheets: one with publications returned by searches in PubMed and PubMed Central and another with publications returned by searches in Dimensions. Column descriptions can be found in the file itself. Each row in each evaluation sheet refers to a pair between a JAMO record and a linked publication.

DCE_citation_report.tsv

Contains JAMO record IDs and PubMed IDs from the initial 2020 DCE trial run. There are 238,994 unique JAMO IDs and 25,007 unique PubMed IDs. 76,511 JAMO records are linked with publications.

Columns:



jamo_id - unique JAMO record ID

citation_count - Number of citations associated with each record

citations - comma-delimited PubMed IDs for linked publications


DCE_source_files.zip:

This folder contains 3 files for each JAMO record in DCE_citation_report.tsv. For each JAMO record listed in the citation report, three files are provided:



JAMO_ID_source.yaml - The fields extracted from the JAMO record that were relevant to the citation search, including any previously known PMIDs (manually curated).

JAMO_ID_expand.yaml - The source record augmented with additional metadata discovered in other resources, including the citations that were discovered based on querying PubMed Central for the values in those metadata fields.

JAMO_ID_audit.json - The audit path as a directed acyclic graph, in JSON.


Of the ~238k JAMO records submitted to DCE, 6,979 contained anomalous fields that caused the records to be rejected for processing. This list is provided as NOT_PROCESSED.txt. Any records that were not processed are represented as zero-length files in the archive.
DOI: 10.6075/j05d8q70
title: Çatalhöyük, East Mound, 2015. In Data from: Spatial Analysis and Heritage Conservation: Leveraging 3-D Data and GIS for Monitoring Çatalhöyük Earthen Architecture

description: Area-wide Drone Photogrammetry of Çatalhöyük, East Mound
DOI: 10.6075/j0r49p5k
title: Çatalhöyük, South Area, 2016. In Data from: Spatial Analysis and Heritage Conservation: Leveraging 3-D Data and GIS for Monitoring Çatalhöyük Earthen Architecture

description: Area-wide terrestrial laser scanning of Çatalhöyük, East Mound, South Area
DOI: 10.6075/j0862dvx
title: Çatalhöyük, South Area, 2012. In Data from: Spatial Analysis and Heritage Conservation: Leveraging 3-D Data and GIS for Monitoring Çatalhöyük Earthen Architecture

description: Area-wide terrestrial laser scanning of Çatalhöyük, East Mound, South Area
DOI: 10.6075/j0mg7mwm
title: Çatalhöyük, South Area, 2017. In Data from: Spatial Analysis and Heritage Conservation: Leveraging 3-D Data and GIS for Monitoring Çatalhöyük Earthen Architecture

description: Area-wide terrestrial laser scanning of Çatalhöyük, East Mound, South Area
DOI: 10.6075/j04f1p4m
title: Çatalhöyük, South Area, 2013. In Data from: Spatial Analysis and Heritage Conservation: Leveraging 3-D Data and GIS for Monitoring Çatalhöyük Earthen Architecture

description: Area-wide terrestrial laser scanning of Çatalhöyük, East Mound, South Area
DOI: 10.6075/j0vx0dw4
title: Çatalhöyük, South Area, 2015. In Data from: Spatial Analysis and Heritage Conservation: Leveraging 3-D Data and GIS for Monitoring Çatalhöyük Earthen Architecture

description: Area-wide terrestrial laser scanning of Çatalhöyük, East Mound, South Area
DOI: 10.6075/j00p0xdw
title: Çatalhöyük, South Area, 2014. In Data from: Spatial Analysis and Heritage Conservation: Leveraging 3-D Data and GIS for Monitoring Çatalhöyük Earthen Architecture

description: Area-wide terrestrial laser scanning of Çatalhöyük, East Mound, South Area
DOI: 10.6075/j0cz35kb
title: Çatalhöyük, North Area, 2017. In Data from: Spatial Analysis and Heritage Conservation: Leveraging 3-D Data and GIS for Monitoring Çatalhöyük Earthen Architecture

description: Area-wide terrestrial laser scanning of Çatalhöyük, East Mound, North Area
DOI: 10.6075/j0ww7g1c
title: Çatalhöyük, North Area, 2013. In Data from: Spatial Analysis and Heritage Conservation: Leveraging 3-D Data and GIS for Monitoring Çatalhöyük Earthen Architecture

description: Area-wide terrestrial laser scanning of Çatalhöyük, East Mound, North Area
DOI: 10.6075/j0s46q9z
title: Çatalhöyük, North Area, 2014. In Data from: Spatial Analysis and Heritage Conservation: Leveraging 3-D Data and GIS for Monitoring Çatalhöyük Earthen Architecture

description: Area-wide terrestrial laser scanning of Çatalhöyük, East Mound, North Area
DOI: 10.6075/j0nc5zk7
title: Çatalhöyük, North Area, 2015. In Data from: Spatial Analysis and Heritage Conservation: Leveraging 3-D Data and GIS for Monitoring Çatalhöyük Earthen Architecture

description: Area-wide terrestrial laser scanning of Çatalhöyük, East Mound, North Area
DOI: 10.6075/j0hq3x9p
title: Çatalhöyük, North Area, 2016. In Data from: Spatial Analysis and Heritage Conservation: Leveraging 3-D Data and GIS for Monitoring Çatalhöyük Earthen Architecture

description: Area-wide terrestrial laser scanning of Çatalhöyük, East Mound, North Area
DOI: 10.6075/j01n7zh8
title: Çatalhöyük, North Area, 2012. In Data from: Spatial Analysis and Heritage Conservation: Leveraging 3-D Data and GIS for Monitoring Çatalhöyük Earthen Architecture

description: Area-wide terrestrial laser scanning of Çatalhöyük, East Mound, North Area
DOI: 10.6075/j0wd3xs8
title: Data from: Spatial Analysis and Heritage Conservation: Leveraging 3-D Data and GIS for Monitoring Çatalhöyük Earthen Architecture

description: This collection includes a mixed remote sensing dataset made of terrestrial laser scanning point clouds, point cloud comparison data, structure from motion-generated polygonal meshes, and related textures and metadata. It was recorded at the Neolithic site of Çatalhöyük, Turkey under the Çatalhöyük Digital Preservation Project carried out in 2012-2017 by scholars and students from the University of California Merced and Cardiff University. The historic series of North Area and South Area point clouds were documented by means of a Faro Focus S120 time of flight laser scanning during six consecutive field seasons (2012-2017), while the East Mound and West Mound landscape 3-D models were generated from low-altitude photos captured by an unmanned aerial vehicle (drone) in 2015. The goal of the Çatalhöyük Digital Preservation Project was to capture the current state of the site to comply with UNESCO site management guidelines for conservation and to understand and quantitatively assess the deterioration of its mud-brick architecture through time via 3-D data comparison and geo spatial methods. The analyses of laser scanning data focus on the wall features of eight buildings of the North Area (B5, B48, B49, B55, B64, B82, B114, B119), which were chosen as priority by Ashley Lingle, the Head of Conservation at Çatalhöyük. Point clouds of wall features were segmented and aligned using the open source software CloudCompare. Pairs of perfectly aligned and identically segmented point clouds were then compared using the M3C2 method in CloudCompare to compute differences (standard deviation) and significant change. The differences among aligned and identical features represent the material loss occurred in those walls in 2012-2017. The point clouds were then analyzed in a GIS platform including environmental data logged in the North Area and vulnerability assessment made in situ by the Conservation Team.
DOI: 10.6075/j0sq8xx4
title: Temple of Bel - 3D Tourist Photo Reconstruction. In Digital Media Lab

description: The Temple of Bel stood for 2000 years in Palmyra, Syria until its destruction by ISIS in late 2015. It featured many well preserved sculptures and paintings. This reconstruction uses over 900 publicly available tourist images taken between 2006 and 2014.
DOI: 10.6075/j0xg9pp9
title: Digital Media Lab

description: This collection includes a range of interdisciplinary 3D media and data visualization projects created and curated by the UC San Diego Library Digital Media Lab.
DOI: 10.34946/d6g598
title: Star of India - 3D Photoscan. In Digital Media Lab

description: The Star of India is a famed iron-hulled ship built in 1863. It is docked at the San Diego Maritime Museum. In February of 2020 the ship was dry docked for regular maintenance. Members of the UCSD Digital Media Lab and DM Consulting captured over 1000 photos in order to create a high resolution 3D model. View this model at https://lib-potree.ucsd.edu/Star_of_India.html.
DOI: 10.15468/dl.4akxx4
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is one of (Digitalización y Sistematización de las Colecciones Biológicas Nacionales del Instituto de Biología, UNAM (vertebrados), Inventario herpetofaunístico del valle semiárido de Tehuacán-Cuicatlán)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is ff90b050-c256-11db-b71b-b8a03c50a862",
 "TaxonKey is Crotalus ravus brunneus Harris & Simmons, 1978",
 "Year 1950-2024"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027371-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6075/j0st7pmv
title: Townsite. In Data from: Building Cultural Heritage Resilience through Remote Sensing: An Integrated Approach using Multi-temporal Site Monitoring, Datafication, and Web-GL Visualization

description: Dataset includes all the natively digital geospatial and 3D data collected in our topographic and 3D survey of Bodie townsite during the entire project period. This large area includes the Bodie downtown, the Chinatown located on north of town, suburbs located on the slope along Green St., and the Standard Stampmill Complex.
description: 3D models and derivative products were generated via an Image-based modeling pipeline or SLAM Lidar pipeline. The 2015 aerial photos were collected by contractor Monarch Inc. using a custom-made multi-rotor drone. The 2020 aerials photos were collected by Denise Jaffke using a DJI Phantom 4 Pro and a DJI Mavich 2 Pro quadcopter drones. All of the IBM 3D models and derivative data were processed in Agisoft Metashape Pro. The geospatial control data was collected by California State Parks licensed surveyor David Gutierrez using a Trimble differential GPS and Trimble robotic total station. The SLAM LiDAR data were collected using a GeoSLAM ZebHorizon range finder and processed in GeoSLAM Hub, LASTools, and CloudCompare.
DOI: 10.6075/j0wm1d6r
title: Benton Railroad Office & Shed. In Data from: Building Cultural Heritage Resilience through Remote Sensing: An Integrated Approach using Multi-temporal Site Monitoring, Datafication, and Web-GL Visualization

description: Dataset includes all the natively digital geospatial and 3D data collected in our topographic and 3D survey of the Benton Railroad office & shed structures located on top of the Bodie Bluff in an area closed to visitors.
description: The geospatial control data was collected by California State Parks licensed surveyor David Gutierrez using a Trimble differential GPS and Trimble robotic total station. The TLS LiDAR data were collected by the UC Merced team using a FARO Focus 3D S120 range finder and processed in FARO Scene and CloudCompare.