cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7760437
title: GRAND-SLAM analysis of simulated nucleotide conversion in Illumina TruSeq data sets for grandRescue

description: These are processed data sets from the simulation of nucleotide conversions (T&gt;C) in single-end and paired-end Illumina TruSeq reads for the purpose of investigating 4sU-induced mapping impairment by read lengths and library preparation methods and the potential of grandRescue to alleviate these effects. The original data set is from: Sarantopoulou, D. <em>et al. </em>(https://doi.org/10.1038/s41598-019-49889-1) GEO Accession:GSE124167 (samples: GSM3523316 - GSM3523318) The zip files contain the full output from the processing pipeline (including the mapped reads, the scripts to run the pipeline and the output) for single-end (R1) and paired-end before and after rescue. The *.tsv.gz files are the GRAND-SLAM output tables. <br> To generate the GRAND-SLAM output yourself, first prepare the mouse genomes. Then run the following command with the respective cit-files, prefixes (*.cit) and genome: gedi -e Slam -trim5p 15 -reads *.cit -genomic m.ens102 -prefix grandslam_t15/* -plot -D -modelall To generate the cit file you have to modify the first lines in start.bash to match the paths on your file system, and then run it. Software versions: gedi toolkit 1.0.5<br> GRAND-SLAM 2.0.7<br> STAR version 2.7.10b
DOI: 10.5281/zenodo.7760436
title: GRAND-SLAM analysis of simulated nucleotide conversion in Illumina TruSeq data sets for grandRescue

description: These are processed data sets from the simulation of nucleotide conversions (T&gt;C) in single-end and paired-end Illumina TruSeq reads for the purpose of investigating 4sU-induced mapping impairment by read lengths and library preparation methods and the potential of grandRescue to alleviate these effects. The original data set is from: Sarantopoulou, D. <em>et al. </em>(https://doi.org/10.1038/s41598-019-49889-1) GEO Accession:GSE124167 (samples: GSM3523316 - GSM3523318) The zip files contain the full output from the processing pipeline (including the mapped reads, the scripts to run the pipeline and the output) for single-end (R1) and paired-end before and after rescue. The *.tsv.gz files are the GRAND-SLAM output tables. <br> To generate the GRAND-SLAM output yourself, first prepare the mouse genomes. Then run the following command with the respective cit-files, prefixes (*.cit) and genome: gedi -e Slam -trim5p 15 -reads *.cit -genomic m.ens102 -prefix grandslam_t15/* -plot -D -modelall To generate the cit file you have to modify the first lines in start.bash to match the paths on your file system, and then run it. Software versions: gedi toolkit 1.0.5<br> GRAND-SLAM 2.0.7<br> STAR version 2.7.10b
DOI: 10.6084/m9.figshare.15032208
title: Evaluating the perspectives of those with severe physical impairments while learning BCI control of a commercial augmentative and alternative communication paradigm

description: Augmentative and alternative communication (AAC) techniques can provide access to communication for individuals with severe physical impairments. Brain–computer interface (BCI) access techniques may serve alongside existing AAC access methods to provide communication device control. However, there is limited information available about how individual perspectives change with motor-based BCI-AAC learning. Four individuals with ALS completed 12 BCI-AAC training sessions in which they made letter selections during an automatic row-column scanning pattern via a motor-based BCI-AAC. Recurring measures were taken before and after each BCI-AAC training session to evaluate changes associated with BCI-AAC performance, and included measures of fatigue, frustration, mental effort, physical effort, device satisfaction, and overall ease of device control. Levels of pre- to post-fatigue were low for use of the BCI-AAC system. However, participants indicated different perceptions of the term fatigue, with three participants discussing fatigue to be generally synonymous with physical effort, and one mental effort. Satisfaction with the BCI-AAC system was related to BCI-AAC performance for two participants, and levels of frustration for two participants. Considering a range of person-centered measures in future clinical BCI-AAC applications is important for optimizing and standardizing BCI-AAC assessment procedures.
DOI: 10.6084/m9.figshare.15032208.v1
title: Evaluating the perspectives of those with severe physical impairments while learning BCI control of a commercial augmentative and alternative communication paradigm

description: Augmentative and alternative communication (AAC) techniques can provide access to communication for individuals with severe physical impairments. Brain–computer interface (BCI) access techniques may serve alongside existing AAC access methods to provide communication device control. However, there is limited information available about how individual perspectives change with motor-based BCI-AAC learning. Four individuals with ALS completed 12 BCI-AAC training sessions in which they made letter selections during an automatic row-column scanning pattern via a motor-based BCI-AAC. Recurring measures were taken before and after each BCI-AAC training session to evaluate changes associated with BCI-AAC performance, and included measures of fatigue, frustration, mental effort, physical effort, device satisfaction, and overall ease of device control. Levels of pre- to post-fatigue were low for use of the BCI-AAC system. However, participants indicated different perceptions of the term fatigue, with three participants discussing fatigue to be generally synonymous with physical effort, and one mental effort. Satisfaction with the BCI-AAC system was related to BCI-AAC performance for two participants, and levels of frustration for two participants. Considering a range of person-centered measures in future clinical BCI-AAC applications is important for optimizing and standardizing BCI-AAC assessment procedures.
DOI: 10.6084/m9.figshare.22188748
title: Supplementary Material for: Clear Cell Renal Cell Carcinoma: A Comprehensive in Silico Study in Searching for Therapeutic Targets

description: Introduction: Clear cell renal cell carcinoma is recognized as one of the leading causes of illness and death worldwide. Understanding the molecular mechanisms in clear cell renal cell carcinoma pathogenesis is crucial for discovering novel therapeutic targets and developing efficient drugs. With the application of a comprehensive in silico analysis of the clear cell renal cell carcinoma-related array sets, the main objective of this study was to discover the top molecules and pathways in the pathogenesis of this cancer. Methods: Clear cell renal cell carcinoma microarray datasets were downloaded from the Gene Expression Omnibus database, and after quality checking, normalization, and analysis using the Limma algorithm, differentially expressed genes (DEGs) were identified, considering the adjusted p-value &lt; 0.049. The intensity values of the identified DEGs were introduced to the WGCNA algorithm to construct co-expression modules. Functional enrichment analyses were performed using the DEGs in the disease-correlated module, and hub genes were identified among the top genes in a protein-protein interaction network and the disease-most correlated module. The expression analysis of hub genes was done by utilizing GEPIA, and the GSCA server was used to compare the expression patterns of hub genes in clear cell renal cell carcinoma and other cancers. DGIdb database was utilized to identify the hub genes-related drugs. Results: Three datasets, including GSE11151, GSE12606, and GSE36897, were retrieved, merged, normalized, and analyzed. Using WGCNA, the DEGs were clustered into eight different modules. Translocation of ZAP-70 to immunological synapse, endosomal/vacuolar pathway, cell-surface interactions at the vascular wall, and immune-related pathways were the topmost enriched terms for the clear cell renal cell carcinoma correlated DEGs. Twelve genes including PTPRC, ITGAM, TLR2, CD86, PLEK, TYROBP, ITGB2, RAC2, CSF1R, CCR5, CCL5, and LCP2 were introduced as hub genes. All the 12 hub genes were up-regulated in clear cell renal cell carcinoma samples and showed a positive correlation with the infiltration of different immune cells. According to the DGIdb database, 127 drugs, including tyrosine kinase inhibitors, glucocorticoids, and chemotaxis targeting molecules, were identified to interact with the hub genes. Conclusion: By utilizing an integrative bioinformatics approach, this experiment shed light on the underlying pathways in the pathogenesis of clear cell renal cell carcinoma and introduced several potential therapeutic targets for repurposing or developing novel drugs for an efficient treatment of this cancer. Our next step would be to assess the gene expression profiles of the identified hubs in different cell populations in the tumor microenvironment.
DOI: 10.6084/m9.figshare.22317817
title: RAW DATA _ HAZE PM MET UMS KK.xlsx

description: The data includes raw data of hourly and daily average particulate matter and meteorological conditions monitored on the ground amid haze in Borneo (2019 Southeast Asia Transboundary Haze).
DOI: 10.6084/m9.figshare.22317817.v1
title: RAW DATA _ HAZE PM MET UMS KK.xlsx

description: The data includes raw data of hourly and daily average particulate matter and meteorological conditions monitored on the ground amid haze in Borneo (2019 Southeast Asia Transboundary Haze).
DOI: 10.7284/147403
title: Multiplexed data collected during research cruise HRS2115 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/147404
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS2115 using a Hawaii UHDAS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/147401
title: GNSS (Global Navigation Satellite System) data collected during research cruise HRS2115 using a Furuno GP-37 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/147402
title: INS (Inertial Navigation System) data collected during research cruise HRS2115 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/147405
title: Singlebeam Echosounder data collected during research cruise HRS2115 using a Knudsen 3260 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/ccdc.csd.cc232fn9
title: CCDC 1938760: Experimental Crystal Structure Determination

description: Related Article: W.W. Brennessel, B.E. Kucera, V.G. Young Jr, J.E. Ellis|2019|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|75|1118|doi:10.1107/S205322961900963X
DOI: 10.5517/ccdc.csd.cc232fpb
title: CCDC 1938761: Experimental Crystal Structure Determination

description: Related Article: W.W. Brennessel, B.E. Kucera, V.G. Young Jr, J.E. Ellis|2019|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|75|1118|doi:10.1107/S205322961900963X
DOI: 10.5517/ccdc.csd.cc232gym
title: CCDC 1938800: Experimental Crystal Structure Determination

description: Related Article: Brian W. Skelton, Massimiliano Massi, Peter V. Simpson|2019|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc232j80
title: CCDC 1938841: Experimental Crystal Structure Determination

description: Related Article: Brian W. Skelton, Massimiliano Massi, Peter V. Simpson|2019|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc232jwm
title: CCDC 1938860: Experimental Crystal Structure Determination

description: Related Article: R.J. Puddephatt, A. Behnia, M.A. Fard|2019|CSD Communication|||
description: Related Article: Ava Behnia, Mahmood Azizpoor Fard, Richard J. Puddephatt|2019|J.Organomet.Chem.|902|120962|doi:10.1016/j.jorganchem.2019.120962
DOI: 10.25318/2710009701-fra
title: Innovation et les stratégies d'entreprise, emplacement du siège social des entreprises

description: Enquête sur l'innovation et les stratégies d'entreprise, emplacement du siège social des entreprises, selon le Système de classification des industries de l'Amérique du Nord (SCIAN) et la taille de l'entreprise pour le Canada et les régions de 2009 à aujourd'hui.
DOI: 10.25318/2710009801-fra
title: Innovation et les stratégies d'entreprise, emplacement des filiales des entreprises

description: Enquête sur l'innovation et les stratégies d'entreprise, emplacement des filiales des entreprises, selon le Système de classification des industries de l'Amérique du Nord (SCIAN) et la taille de l'entreprise pour le Canada et les régions de 2009 à aujourd'hui.
DOI: 10.25318/3710005101-fra
title: Littératie, numératie - Scores moyens et répartition des niveaux de compétence, selon l'industrie, la profession et le sexe

description: Littératie, numératie - Scores moyens et répartition des niveaux de compétence, selon l'industrie, la profession et le sexe, population employée de 16 à 65 ans, Canada, provinces et territoires, 2012.
DOI: 10.5517/ccdc.csd.cc1kpdyl
title: CCDC 1450550: Experimental Crystal Structure Determination

description: Related Article: Hui Tao, Hao Tian, Shan Jiang, Xuwen Xiang, Yinuo Lin, Wasim Ahmed, Riyuan Tang, Zi-Ning Cui|2019|Pesticide Biochemistry and Physiology|160|87|doi:10.1016/j.pestbp.2019.07.005
DOI: 10.5517/ccdc.csd.cc1m20f4
title: CCDC 1491485: Experimental Crystal Structure Determination

description: Related Article: Lili Fan, Xiaobin Liu, Liangliang Zhang, Xia Kong, Zhenyu Xiao, Weidong Fan, Rongming Wang, Daofeng Sun|2019|J.Mol.Struct.|1197|87|doi:10.1016/j.molstruc.2019.07.037
DOI: 10.5517/ccdc.csd.cc21tw6z
title: CCDC 1901701: Experimental Crystal Structure Determination

description: Related Article: Mikaël Kepenekian, Yann Molard, Karine Costuas, Pierric Lemoine, Régis Gautier, Soraya Ababou Girard, Bruno Fabre, Pascal Turban, Stéphane Cordier|2019|Materials Horizons|6|1828|doi:10.1039/C9MH00724E
DOI: 10.5517/ccdc.csd.cc21yhxf
title: CCDC 1905195: Experimental Crystal Structure Determination

description: Related Article: Jie Hu, Youwen Fei, Hongbin Zhao, Zhishuang Wang, Chunju Li, Jian Li|2019|Chem.Commun.|55|8394|doi:10.1039/C9CC03550H
DOI: 10.5517/ccdc.csd.cc21z6kt
title: CCDC 1905866: Experimental Crystal Structure Determination

description: Related Article: Cássia de Q. O. Cavalcante, Daniel da S. Arcanjo, Guilherme G. da Silva, Diêgo M. de Oliveira, Claudia C. Gatto|2019|New J.Chem.|43|11209|doi:10.1039/C9NJ01814J
DOI: 10.5517/ccdc.csd.cc232fl7
title: CCDC 1938758: Experimental Crystal Structure Determination

description: Related Article: W.W. Brennessel, B.E. Kucera, V.G. Young Jr, J.E. Ellis|2019|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|75|1118|doi:10.1107/S205322961900963X
DOI: 10.5517/ccdc.csd.cc232fm8
title: CCDC 1938759: Experimental Crystal Structure Determination

description: Related Article: W.W. Brennessel, B.E. Kucera, V.G. Young Jr, J.E. Ellis|2019|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|75|1118|doi:10.1107/S205322961900963X
DOI: 10.5517/ccdc.csd.cc232fqc
title: CCDC 1938762: Experimental Crystal Structure Determination

description: Related Article: W.W. Brennessel, B.E. Kucera, V.G. Young Jr, J.E. Ellis|2019|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|75|1118|doi:10.1107/S205322961900963X
DOI: 10.5517/ccdc.csd.cc232j6y
title: CCDC 1938839: Experimental Crystal Structure Determination

description: Related Article: Brian W. Skelton, Massimiliano Massi, Peter V. Simpson|2019|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc232ktl
title: CCDC 1938889: Experimental Crystal Structure Determination

description: Related Article: Brian W. Skelton, Massimiliano Massi, Peter V. Simpson|2019|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc232md7
title: CCDC 1938938: Experimental Crystal Structure Determination

description: Related Article: Markus Thiele, Ulrich Koert, Werner Massa|2019|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc232mf8
title: CCDC 1938939: Experimental Crystal Structure Determination

description: Related Article: Markus Thiele, Ulrich Koert, Werner Massa|2019|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc232mg9
title: CCDC 1938940: Experimental Crystal Structure Determination

description: Related Article: Markus Thiele, Ulrich Koert, Werner Massa|2019|CSD Communication|||
DOI: 10.25318/2710009501-eng
title: Innovation and business strategy, successful mitigation or use of government support programs to overcome obstacles to innovation

description: Survey of innovation and business strategy, successful mitigation or use of government support programs to overcome obstacles to innovation, by North American Industry Classification System (NAICS) and enterprise size for Canada and regions from 2009 to today.
DOI: 10.25318/2710009501-fra
title: Innovation et les stratégies d'entreprise, ont surmonté ou ayant recours aux programmes gouvernementaux de soutien pour atténuer les obstacles à l'innovation

description: Innovation et les stratégies d'entreprise, ont surmonté ou ayant recours aux programmes gouvernementaux de soutien pour atténuer les obstacles à l'innovation
DOI: 10.25318/2710009601-eng
title: Innovation and business strategy, enterprises that are subsidiaries of another enterprise

description: Survey of innovation and business strategy, enterprises that are subsidiaries of another enterprise, by North American Industry Classification System (NAICS) and enterprise size for Canada and regions from 2009 to today.
DOI: 10.25318/2710009701-eng
title: Innovation and business strategy, location of enterprises' head office

description: Survey of innovation and business strategy, location of enterprises' head office, by North American Industry Classification System (NAICS) and enterprise size for Canada and regions from 2009 to today.
DOI: 10.25318/3710005001-eng
title: Problem-solving in technology-rich environments - Distribution of non-respondents and proficiency levels, by labour force status, highest level of education and age group

description: Problem-solving in technology-rich environments (PS-TRE) - Distribution of non-respondents and proficiency levels, by labour force status, highest level of education and age group, population aged 16-65, Canada, provinces and territories 2012.
DOI: 10.25318/3710005001-fra
title: La résolution de problèmes dans des environnements technologiques - Répartition de non-répondants et des niveaux de compétence, selon la situation d'activité, le niveau le plus élevé de scolarité et le groupe d'âge

description: La résolution de problèmes dans des environnements technologiques (RP-ET) - Répartition de non-répondants et des niveaux de compétence, selon la situation d'activité, le niveau le plus élevé de scolarité et le groupe d'âge, population de 16 à 65 ans, Canada, provinces et territoires, 2012.
DOI: 10.25592/dgs.corpus-type-65457
title: TOD5B^ (MEINE DGS – annotiert. Öffentliches Korpus der Deutschen Gebärdensprache, mehrere Releases)
title: DEATH5B^ (MY DGS – annotated. Public Corpus of German Sign Language, several releases)

description: Ein Type aus der Annotation von MEINEDGS mit allen seinen Tokens aus MEINEDGS: The Public DGS Corpus consists of more than 50 hours of video data from the DGS-Korpus project made available together with annotations for research purposes. In this project, data were collected all across Germany in the timeframe 2010-2012. The public corpus shows 330 informants in 4 different age groups (from 18 years on) from 13 different regions. All parts are conversations between two informants in German Sign Language (DGS). The majority of transcripts included cover discussions and reports on Deaf life and personal experiences, although there are examples of other tasks such as story retellings as well.<br>Transcripts are made available in iLex and ELAN format as well as in SRT subtitles format that can be imported in MaxQDA and other analysis tools, together with the mp4 video files in 360p50. Über diese versionsunabhängige DOI ist die jeweils neueste Version des Datensatzes auffindbar.
description: A type from the annotation of MYDGS including all its tokens in MYDGS: Das Öffentliche DGS-Korpus besteht aus mehr als 50 Stunden Video aus dem Projekt DGS-Korpus , die zusammen mit Annotationen für Forschungszwecke zur Verfügung gestellt werden. Die Datenerhebung im Projekt fand im Zeitraum 2010-2012 in ganz Deutschland statt. Das öffentliche Korpus besteht aus Gesprächen jeweils zweier Informantinnen oder Informanten in Deutscher Gebärdensprache. Das Korpus umfasst 330 Informantinnen und Informanten in vier verschiedenen Altersgruppen (ab 18 Jahren) aus 13 verschiedenen Regionen. Der Schwerpunkt der Sammlung liegt auf Transkripten von Diskussionen und Berichten über das Leben Gehörloser sowie persönliche Erfahrungen, sie enthält aber auch Beispiele anderer Erhebungsformate wie Nacherzählungen.<br>Transkripte werden im iLex- und ELAN-Format sowie als SRT-Untertiteldateien (zum Import etwa in MaxQDA) zur Verfügung gestellt. Die zugehörigen MP4-Videodaten sind durchgängig im Format 360p50. This version-dependent DOI allows you to find the latest version of the dataset.
DOI: 10.25828/fskh-s266
title: Quality of Life Survey II 2011
DOI: 10.25828/j1fr-c905
title: Cape Area Study 2005
DOI: 10.5517/ccdc.csd.cc1m20d3
title: CCDC 1491484: Experimental Crystal Structure Determination

description: Related Article: Lili Fan, Xiaobin Liu, Liangliang Zhang, Xia Kong, Zhenyu Xiao, Weidong Fan, Rongming Wang, Daofeng Sun|2019|J.Mol.Struct.|1197|87|doi:10.1016/j.molstruc.2019.07.037
DOI: 10.5517/ccdc.csd.cc1m20g5
title: CCDC 1491486: Experimental Crystal Structure Determination

description: Related Article: Lili Fan, Xiaobin Liu, Liangliang Zhang, Xia Kong, Zhenyu Xiao, Weidong Fan, Rongming Wang, Daofeng Sun|2019|J.Mol.Struct.|1197|87|doi:10.1016/j.molstruc.2019.07.037
DOI: 10.5517/ccdc.csd.cc1mprdg
title: CCDC 1510456: Experimental Crystal Structure Determination

description: Related Article: Sinara F.F. dos Santos, Aline A. Oliveira, Genisson Reis, Ghodrat Mahmoudi, Farhad A. Afkhami, Patrícia S. Santiago, Rommel B. Viana, Albérico B.F. da Silva, Regina H.A. Santos|2019|J.Mol.Struct.|1197|393|doi:10.1016/j.molstruc.2019.07.045
DOI: 10.5517/ccdc.csd.cc1q7sxn
title: CCDC 1586422: Experimental Crystal Structure Determination

description: Related Article: Davut Avcı, Sümeyye Altürk, Fatih Sönmez, Ömer Tamer, Adil Başoğlu, Yusuf Atalay, Belma Zengin Kurt, Necmi Dege|2019|J.Mol.Struct.|1197|645|doi:10.1016/j.molstruc.2019.07.039
DOI: 10.5517/ccdc.csd.cc1zrjw4
title: CCDC 1839877: Experimental Crystal Structure Determination

description: Related Article: Subal Chandra Manna, Soumen Mistri, Apu Patra, Manas Kumar Mahish, Dama Saren, Rajesh Kumar Manne, Manas Kumar Santra, Ennio Zangrando, Horst Puschmann|2019|Polyhedron|171|77|doi:10.1016/j.poly.2019.06.049
DOI: 10.5517/ccdc.csd.cc20tvzp
title: CCDC 1871903: Experimental Crystal Structure Determination

description: Related Article: Huy-Dinh Vu, Christelle Bouvry, Jacques Renault, Arnaud Bondon, Fabian Lambert, Thierry Roisnel, Philippe Uriac|2019|J.Organomet.Chem.|897|228|doi:10.1016/j.jorganchem.2019.07.014
DOI: 10.5517/ccdc.csd.cc21z6nx
title: CCDC 1905869: Experimental Crystal Structure Determination

description: Related Article: Cássia de Q. O. Cavalcante, Daniel da S. Arcanjo, Guilherme G. da Silva, Diêgo M. de Oliveira, Claudia C. Gatto|2019|New J.Chem.|43|11209|doi:10.1039/C9NJ01814J
DOI: 10.5517/ccdc.csd.cc21zd9r
title: CCDC 1906044: Experimental Crystal Structure Determination

description: Related Article: Yitong Chen, Chao Xu, Bingjia Xu, Zhu Mao, Jian-An Li, Zhan Yang, Naga Raju Peethani, Cong Liu, Guang Shi, Feng Long Gu, Yi Zhang, Zhenguo Chi|2019|Mater. Chem. Front.|3|1800|doi:10.1039/C9QM00312F