cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7369487.v1
title: Additional file 8: of A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: List of the designed annealing blocking oligonucleotides for the eukaryotic groups Stramenopiles, Alveolata, Rhizaria and Telonema. Characteristics and sequence coverage rates of fungal and non-fungal eukaryotic groups are given. (XLSX 11 kb)
DOI: 10.7284/135380
title: Singlebeam Echosounder data collected during research cruise OC1904A using a Knudsen 3260 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369478
title: Additional file 7: of A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: Primer pairs suitable for the amplification of specific fungal phyla/subphyla. Characteristics of the primer pair and sequence coverage rate of the target group is indicated. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.7369478.v1
title: Additional file 7: of A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: Primer pairs suitable for the amplification of specific fungal phyla/subphyla. Characteristics of the primer pair and sequence coverage rate of the target group is indicated. (XLSX 19 kb)
DOI: 10.7284/135376
title: Water Temperature data collected during research cruise OC1904A using a Sea-Bird SBE-48 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369466
title: Additional file 6: of A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: List of the three newly designed primer pairs passing the evaluation criteria. Primer performance was tested as for other primer pairs. Characteristics and sequence coverage rates of fungal and non-fungal eukaryotic groups are given. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7369466.v1
title: Additional file 6: of A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: List of the three newly designed primer pairs passing the evaluation criteria. Primer performance was tested as for other primer pairs. Characteristics and sequence coverage rates of fungal and non-fungal eukaryotic groups are given. (XLSX 12 kb)
DOI: 10.7284/135382
title: Water Temperature data collected during research cruise OC1904A using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369454
title: Additional file 3: of Saccharomyces cerevisiae adapted to grow in the presence of low-dose rapamycin exhibit altered amino acid metabolism

description: Transcriptome and endometabolic profiles of air±pH ± cultures of yeast inoculated into 2 nM rapamycin-containing medium (.xlsx format, four worksheets including legend; gene expression profiles of rapamycin-treated and control cultures, the endometabolite profiles, and a summary of the significant Gene Ontology enrichments around the transcriptional changes identified provided in separate worksheets). (XLSX 893 kb)
DOI: 10.7284/135381
title: Timeserver data collected during research cruise OC1904A using a Microsemi SyncServer S350 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369454.v1
title: Additional file 3: of Saccharomyces cerevisiae adapted to grow in the presence of low-dose rapamycin exhibit altered amino acid metabolism

description: Transcriptome and endometabolic profiles of air±pH ± cultures of yeast inoculated into 2 nM rapamycin-containing medium (.xlsx format, four worksheets including legend; gene expression profiles of rapamycin-treated and control cultures, the endometabolite profiles, and a summary of the significant Gene Ontology enrichments around the transcriptional changes identified provided in separate worksheets). (XLSX 893 kb)
DOI: 10.6084/m9.figshare.7369445
title: Additional file 5: of A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: Performance of the most promising primer pairs empirically tested on 12 fungal strains. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7369445.v1
title: Additional file 5: of A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: Performance of the most promising primer pairs empirically tested on 12 fungal strains. (XLSX 10 kb)
DOI: 10.7284/135389
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1904B using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369439
title: Additional file 2: of Saccharomyces cerevisiae adapted to grow in the presence of low-dose rapamycin exhibit altered amino acid metabolism

description: Growth characteristics and exometabolite levels of air±pH ± cultures of yeast inoculated into 2 nM rapamycin-containing medium (.xlsx format, seven worksheets including legend; data on fermentation characteristics, optical density, biomass density, exometabolite levels, exometabolite yields, and comparison of agitation at 400 rpm vs 800 rpm provided in separate worksheets). (XLSX 35 kb)
DOI: 10.6084/m9.figshare.7369439.v1
title: Additional file 2: of Saccharomyces cerevisiae adapted to grow in the presence of low-dose rapamycin exhibit altered amino acid metabolism

description: Growth characteristics and exometabolite levels of air±pH ± cultures of yeast inoculated into 2 nM rapamycin-containing medium (.xlsx format, seven worksheets including legend; data on fermentation characteristics, optical density, biomass density, exometabolite levels, exometabolite yields, and comparison of agitation at 400 rpm vs 800 rpm provided in separate worksheets). (XLSX 35 kb)
DOI: 10.7284/135398
title: Anemometer data collected during research cruise OC1904B using a Gill WindObserver II instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135392
title: Fluorometer data collected during research cruise OC1904B using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369421
title: Additional file 1: of Saccharomyces cerevisiae adapted to grow in the presence of low-dose rapamycin exhibit altered amino acid metabolism

description: Growth characteristics regarding the optimisation of the working concentration and the mode of administration of rapamycin (.xlsx format, single worksheet). (XLSX 16 kb)
DOI: 10.6084/m9.figshare.7369424
title: Additional file 4: of A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: Annealing temperatures empirically evaluated for the most promising primer pairs. Two fungal strains, one of the Basidiomycota and one of the Ascomycota, served as template DNA. Intensity of the color indicates the strength of the amplification product detected by ethidium bromide staining. Red, template DNA from Taphrina deformans; Green, template DNA from Agaricus bisporus; *, optimal annealing temperature. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.7369421.v1
title: Additional file 1: of Saccharomyces cerevisiae adapted to grow in the presence of low-dose rapamycin exhibit altered amino acid metabolism

description: Growth characteristics regarding the optimisation of the working concentration and the mode of administration of rapamycin (.xlsx format, single worksheet). (XLSX 16 kb)
DOI: 10.6084/m9.figshare.7369424.v1
title: Additional file 4: of A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: Annealing temperatures empirically evaluated for the most promising primer pairs. Two fungal strains, one of the Basidiomycota and one of the Ascomycota, served as template DNA. Intensity of the color indicates the strength of the amplification product detected by ethidium bromide staining. Red, template DNA from Taphrina deformans; Green, template DNA from Agaricus bisporus; *, optimal annealing temperature. (XLSX 60 kb)
DOI: 10.7284/135393
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1904B using a Furuno GP-90 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369409
title: Additional file 3: of A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: List of the seven most promising primer pairs for biodiversity assessments identified by in silico PCR. Primer pairs are suitable for different sequencing methods dependent on the expected amplicon size. Sequence coverage rate of diverse fungal and non-fungal eukaryotic groups as revealed by in silico PCR. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7369409.v1
title: Additional file 3: of A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: List of the seven most promising primer pairs for biodiversity assessments identified by in silico PCR. Primer pairs are suitable for different sequencing methods dependent on the expected amplicon size. Sequence coverage rate of diverse fungal and non-fungal eukaryotic groups as revealed by in silico PCR. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7369400
title: Additional file 2: of A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: List of the 436 fungi-specific primer pairs tested for their performance by in silico PCR. Primer pairs were grouped according to the expected amplicon size into three groups: S for small (≤600 bp), M for medium (600–1000 bp), and L for large size (&gt; 1000 bp). (XLSX 124 kb)
DOI: 10.7284/135397
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1904B using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369400.v1
title: Additional file 2: of A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: List of the 436 fungi-specific primer pairs tested for their performance by in silico PCR. Primer pairs were grouped according to the expected amplicon size into three groups: S for small (≤600 bp), M for medium (600–1000 bp), and L for large size (&gt; 1000 bp). (XLSX 124 kb)
DOI: 10.7284/135388
title: Gyrocompass data collected during research cruise OC1904B using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369382
title: Additional file 1: of A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: List of the 164 fungi-specific primers detected by a literature research. For each primer, performance, characteristics and source literature are provided. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.7369382.v1
title: Additional file 1: of A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: List of the 164 fungi-specific primers detected by a literature research. For each primer, performance, characteristics and source literature are provided. (XLSX 36 kb)
DOI: 10.7284/135387
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1904B using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135399
title: Radiometer data collected during research cruise OC1904B using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135394
title: Singlebeam Echosounder data collected during research cruise OC1904B using a Knudsen 3260 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369352
title: Additional file 10: of A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: UniFrac pairwise permutation test. The effect of blocking oligos (BO) and amount of co-amplified sequences on fungal community structure was tested. Bonferroni-corrected p-values are reported. Source datasets were the subsampled and non-subsampled community data of samples OSD28, OSD28_BO, OSD36, OSD36_BO, HR48, HR48_BO. *significant difference of fungal assemblage (p
DOI: 10.6084/m9.figshare.7369352.v1
title: Additional file 10: of A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: UniFrac pairwise permutation test. The effect of blocking oligos (BO) and amount of co-amplified sequences on fungal community structure was tested. Bonferroni-corrected p-values are reported. Source datasets were the subsampled and non-subsampled community data of samples OSD28, OSD28_BO, OSD36, OSD36_BO, HR48, HR48_BO. *significant difference of fungal assemblage (p
DOI: 10.7284/135390
title: Water Temperature data collected during research cruise OC1904B using a Sea-Bird SBE-48 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135396
title: Water Temperature data collected during research cruise OC1904B using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135395
title: Timeserver data collected during research cruise OC1904B using a Microsemi SyncServer S350 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135403
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1904X using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135411
title: Anemometer data collected during research cruise OC1904X using a Gill WindObserver II instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135406
title: Fluorometer data collected during research cruise OC1904X using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135407
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1904X using a Furuno GP-90 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369283
title: Additional file 9: of Denosumab treatment is associated with the absence of circulating tumor cells in patients with breast cancer

description: Table S7. Clinical features of patients with single circulating tumor cell and circulating tumor cell clusters. The table shows clinical features of patients in whom only single circulating tumor cells (CTC single cell) or also clustered circulating tumor cells (CTC clusters) were found. Abbreviations: ER Estrogen receptor, HER2 Human epidermal growth factor receptor 2, PR Progesterone receptor. (XLSX 11 kb)
DOI: 10.7284/135410
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1904X using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369283.v1
title: Additional file 9: of Denosumab treatment is associated with the absence of circulating tumor cells in patients with breast cancer

description: Table S7. Clinical features of patients with single circulating tumor cell and circulating tumor cell clusters. The table shows clinical features of patients in whom only single circulating tumor cells (CTC single cell) or also clustered circulating tumor cells (CTC clusters) were found. Abbreviations: ER Estrogen receptor, HER2 Human epidermal growth factor receptor 2, PR Progesterone receptor. (XLSX 11 kb)
DOI: 10.7284/135402
title: Gyrocompass data collected during research cruise OC1904X using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369265
title: Additional file 2: of Coexistence of two sympatric cryptic bat species in French Guiana: insights from genetic, acoustic and ecological data

description: Table S7. Data used in the study, including sex, forearm length, FME, genotype at 20 microsatellite markers for 748 Pteronotus sp. Data in bold are individuals identified as hybrids using microsatellite (N = 30) or mitochondrial data (N = 6). (XLSX 253 kb)
DOI: 10.6084/m9.figshare.7369265.v1
title: Additional file 2: of Coexistence of two sympatric cryptic bat species in French Guiana: insights from genetic, acoustic and ecological data

description: Table S7. Data used in the study, including sex, forearm length, FME, genotype at 20 microsatellite markers for 748 Pteronotus sp. Data in bold are individuals identified as hybrids using microsatellite (N = 30) or mitochondrial data (N = 6). (XLSX 253 kb)
DOI: 10.7284/135401
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1904X using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369253
title: MOESM1 of Identification of RPL5 and RPL10 as novel diagnostic biomarkers of Atypical teratoid/rhabdoid tumors

description: Additional file 1: Table S1. Datasets of the 47 AT/RTs, 31 KRTs, 8 normal brain samples and 23 normal kidney samples.
DOI: 10.7284/135412
title: Radiometer data collected during research cruise OC1904X using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369253.v1
title: MOESM1 of Identification of RPL5 and RPL10 as novel diagnostic biomarkers of Atypical teratoid/rhabdoid tumors

description: Additional file 1: Table S1. Datasets of the 47 AT/RTs, 31 KRTs, 8 normal brain samples and 23 normal kidney samples.
DOI: 10.7284/135404
title: Water Temperature data collected during research cruise OC1904X using a Sea-Bird SBE-48 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369238
title: Additional file 7: of Denosumab treatment is associated with the absence of circulating tumor cells in patients with breast cancer

description: Table S6. Clinical features of patients who were treated or not with denosumab. The table shows clinical features of patients who were treated or not with denosumab. Abbreviations: ER Estrogen receptor, HER2 Human epidermal growth factor receptor 2, PR Progesterone receptor. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7369238.v1
title: Additional file 7: of Denosumab treatment is associated with the absence of circulating tumor cells in patients with breast cancer

description: Table S6. Clinical features of patients who were treated or not with denosumab. The table shows clinical features of patients who were treated or not with denosumab. Abbreviations: ER Estrogen receptor, HER2 Human epidermal growth factor receptor 2, PR Progesterone receptor. (XLSX 11 kb)
DOI: 10.7284/135409
title: Water Temperature data collected during research cruise OC1904X using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369223
title: Additional file 6: of Denosumab treatment is associated with the absence of circulating tumor cells in patients with breast cancer

description: Table S5. Bisphosphonates or denosumab treatment. The table shows whether bisphosphonates or denosumab was administered to each of the patients included in the study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7369226
title: Additional file 5 of Large scale study of anti-sense regulation by differential network analysis

description: 60DAH experiment â http://www.info.univ-angers.fr/~legeay/AF5_60DAH.zip . Normalized data (without background suppression) of the 60DAH (60 Days After Harvest) experiment. The file contains the normalized expression data of the 126,022 apple genes (rows) of the 22 samples (columns). The normalization method used is the quantile normalization. (TXT 1 kb)
DOI: 10.7284/135408
title: Timeserver data collected during research cruise OC1904X using a Microsemi SyncServer S350 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369223.v1
title: Additional file 6: of Denosumab treatment is associated with the absence of circulating tumor cells in patients with breast cancer

description: Table S5. Bisphosphonates or denosumab treatment. The table shows whether bisphosphonates or denosumab was administered to each of the patients included in the study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7369226.v1
title: Additional file 5 of Large scale study of anti-sense regulation by differential network analysis

description: 60DAH experiment â http://www.info.univ-angers.fr/~legeay/AF5_60DAH.zip . Normalized data (without background suppression) of the 60DAH (60 Days After Harvest) experiment. The file contains the normalized expression data of the 126,022 apple genes (rows) of the 22 samples (columns). The normalization method used is the quantile normalization. (TXT 1 kb)
DOI: 10.6084/m9.figshare.7369214
title: Additional file 7: of Comparative genomics analysis to differentiate metabolic and virulence gene potential in gastric versus enterohepatic Helicobacter species

description: Figure S1. A) Genome sizes were plotted against the number of annotated protein coding sequences (CDS) and GC content. For all Helicobacter genomes, a linear relationship existed for genome size versus number of annotated protein CDS (R2 = 0.8939). Three EHS genomes (H. muridarum ST1, H. pametensis ATCC 51478, and H. cholecystus ATCC 700242) and one gastric genome (H. bizzozeronii CCUG 35545) appeared to be outliers and are indicated in the graph. Diamonds (◆), gastric genomes; circles (●) EHS genomes; cross (X), C. jejuni genome. B) Genome sizes were plotted against the additive size of all protein CDS, RNA genes, and non-coding gene sequences. Linear relationships existed for genome size versus size of protein CDS (R2 = 0.9782) and non-coding gene sequences (R2 = 0.8057), but not for RNA gene sequences (R2 = 0.0076). (ZIP 458 kb)