cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.jg2g7f
title: Occurrence Download

description: A dataset containing 248 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Oligosarcus jenynsii)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 248 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068433-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/4pq-ycr-e1j
title: Mahonia aquifolium (Pursh) Nutt.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/q1s-bwa-r2j
title: Acineta Lindl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/9q9-4w2-9pc
title: Centaurea L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/npa-1g8-60x
title: Acineta Lindl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.rq73u4
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Digitaria ciliaris",
 "Country is Solomon Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068430-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/s8j-gs2-0ef
title: Noccaea caerulescens (J. Presl & C. Presl) F. K. Mey.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rpn-6bm-qaq
title: Myosotis arvensis (L.) Hill

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/z16-93e-5qh
title: Viola reichenbachiana Jord. ex Boreau

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/hzv-b9h-n8d
title: Ilex aquifolium L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/lc2-ph1-cjh
title: Caragana frutex (L.) K.Koch

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/mts-m75-xx9
title: Centaurea jacea subsp. weldeniana (Rchb.) Greuter

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/r03-yqz-vxh
title: Acineta Lindl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/vla-6qt-tcp
title: Acineta Lindl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ckl-1j0-bt8
title: Caragana frutex (L.) K.Koch

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/hgd-66x-0ta
title: Aganisia fimbriata Rchb.f.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/gpf-3q9-8fh
title: Brassia R.Br.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/jmj-ek4-rkc
title: Asteriscus aquaticus (L.) Less.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/532-jst-s3k
title: Campanula poscharskyana Degen

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/yqr-rfg-q2t
title: Acineta Lindl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.pn9b47
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Digitaria ciliaris",
 "Country is Suriname",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068435-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/g8e-c6h-var
title: Cenchrus flaccidus (Griseb.) Morrone

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/gnh-wpg-9yk
title: Imperata cylindrica (L.) Raeusch.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/9qs-mrp-cl3
title: Acineta Lindl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/g6z-atz-r4r
title: Carex disticha Huds.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/skc-8fb-378
title: Crepis viscidula Froel.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/t2s-5dj-c8v
title: Althaea × taurinensis DC.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/c1p-wxz-g99
title: Potentilla inclinata Vill.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/j9z-cjq-e67
title: Campanula glomerata L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/pqv-w47-1cn
title: Helleborus odorus subsp. cyclophyllus (A. Braun) Strid

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/bk3-fd9-f76
title: Galanthus elwesii Hook.f.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/llt-x45-dvs
title: Althaea × taurinensis DC.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/b9a-7t5-ysp
title: Campanula cervicaria L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rdh-y1a-lq1
title: Crupina crupinastrum (Moris) Vis.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rjs-fwk-xl1
title: Briza media L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ep7-8x0-27y
title: Teucrium montanum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/xsr-qtz-hdt
title: Dactylis glomerata subsp. hispanica (Roth) Nyman

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15786/jc3c-ky77
title: AquaFlux Processing Code and NoName Sap Flux Dataset

description: Plant transpiration is the largest evaporative flux from most vegetated ecosystems, playing a dominant role in energy balance, water and element cycling, ecosystem services, and water security. Quantification of plant-level transpiration, e.g. sap flux, is essential to land managers and scientists. Thermal dissipation probes (TDP) are reliable and affordable tools for measuring sap flux, but difficulties in replicable data processing often serve as a barrier to their use and interpretation of data. AquaFlux is an R package designed to efficiently process and analyze TDP data. This program maximizes data collection by continually importing raw TDP values and alerting the user of any malfunctioning sensors. Data processing is expedited through a user-friendly graphical interface, predictive algorithms, and data recovery options. AquaFlux’s post-processing options address gapfilling, radial trends in sap flux across sapwood, and rescaling from points to whole stems. To ensure reproducibility and transparency, all data processing steps are automatically documented, highlighting the impact of user decisions. AquaFlux confirms to emerging best practices in data science and TDP data processing and analyses. Understanding spatiotemporal patterns of sap flux and how they relate to plant traits is essential for enhancing agricultural productivity, optimizing land management planning, ecological studies, and improving climate modeling. AquaFlux provides a robust tool to facilitate predictive understanding of plant transpiration.
DOI: 10.3535/b64-g73-5ky
title: Acanthus hungaricus (Borbás) Baen.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/f05-5sr-tn0
title: Carex hirta L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.7zx9sk
title: Occurrence Download

description: A dataset containing 1371 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Emberiza cirlus)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 1371 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068434-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/433-5cy-x06
title: Quercus cerris L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/b9n-xry-5t8
title: Aganisia cyanea (Lindl.) Rchb.f.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/kl1-5mj-z7g
title: Nigella damascena L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ptc-g6d-1cx
title: Buxus sempervirens L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/95k-fke-x47
title: Cardamine matthioli Moretti

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/znr-rna-qff
title: Prunella laciniata (L.) L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15786/22394989
title: Natural Gas Wells, Completion and Production Data

description: &lt;p&gt;
The attached zip file has file Comma Separated Value (CSV) files which contain data about natural gas wells, completion and production data from the states of Arkansas and Colorado for the period 2008-2017. These datasets were downloaded by one of the authors from http://www.noggateway.org/ in Aug 2018. However, the website is not currently active. 
&lt;/p&gt;
&lt;p&gt;
As per https://www.eia.gov/todayinenergy/detail.php?id=33072 , NOGG website was created as a collaborative initiative among the U.S. Energy Information Administration, the Groundwater Protection Council (GWPC) and its member states, and the U.S. Department of Energy’s Office of Oil and Natural Gas, part of the Office of Fossil Energy. The Gateway combines participating states’ publicly available oil and natural gas data into a common framework with consistent definitions. Links to the state oil and gas data repository for Arkansas and Colorado are https://aogc.state.ar.us/data/default.aspx and https://cogcc.state.co.us/data.html#/cogis respectively.
&lt;/p&gt;
DOI: 10.3535/0kp-qxy-tm4
title: Aganisia cyanea (Lindl.) Rchb.f.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/crp-rc2-sp8
title: Bromus secalinus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/9be-02a-z99
title: Linum bienne Mill.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15786/4d6mk3
title: Rock-on-a-chip: A novel method for designing representative microfluidic platforms based on real rock structure and pore network modelling

description: 1. Data for Figures 5, 6, 10, 14, and 15 (Excel file) This dataset contains the numerical values used to generate Figures 5, 6, 10, 14, and 15 of the associated manuscript. The data are organized in a Microsoft Excel (.xls) file with separate sheets corresponding to each figure. These figures represent key results from permeability measurements and flow simulations comparing experimental and modeled pore networks in quasi-2D microfluidic chips derived from CT-scanned rock samples. 

2. MATLAB Script for 2D Mosaic Generation from 3D Pore Networks (MATLAB .m file) This MATLAB script implements the multi-step image processing workflow described in the manuscript for generating realistic 2D pore geometries from 3D CT-based pore network data. Starting from a binarized image of unconnected pores, the script includes the following key functions: connect_mosaic: Connects isolated pores with uniform-width throats and outputs an image of separated throats. distrib_throats: Edits throat widths based on a target throat size distribution and specified number of categories (Nmax), allowing control over heterogeneity in sparse mosaics. smooth_image: Applies smoothing to pore-grain boundaries to enhance fabrication compatibility. grain_fix: Removes small dead-end pores and fixes partially connected throats in large grains, with the minimum grain size (L_min) set by the user. All parameters can be adjusted by the user to match the pore and throat size distributions (PSD and TSD) from the 3D subvolume data. This script was used to produce the microfluidic patterns described in the study, ensuring morphological consistency between 3D and 2D representations.
description: CC-BY 4.0 license applies to Figure Data.tab <br>

MIT license applies to Main_Code.m
DOI: 10.3535/g7z-8ch-r0z
title: Veronica chamaedrys L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/lmp-z4a-ey5
title: Taraxacum officinale Weber ex F. H. Wigg.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15786/opexcu
title: A Comparison of 16S rRNA-gene and 16S rRNA-transcript Derived Microbial Communities in Bulk and Rhizosphere Soils

description: 16S ribosomal RNA rRNA transcripts and 16S ribosomal DNA rRNA gene reads for soil bacterial.

Data availability files related to publication: Ceretto A and Weinig C (2025) A comparison of 16S rRNA-gene and 16S rRNA-transcript derived microbial communities in bulk and rhizosphere soils.  Front. Microbiol. 16:1608399. doi: 10.3389/fmicb.2025.1608399
DOI: 10.3535/ngn-7xz-xnv
title: Sedum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/s0z-56g-s3j
title: Prunus cerasifera Ehrh.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.qufeeh
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zinnia peruviana",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 83 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068436-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15786/g4wihj
title: Microbial and metabolomic rhizosphere effect of B. stricta genotypes are often suppressed when in local soil environment

description: Raw data (OUT_Tax_16S.sintax and metafinal.csv) used to generate phyloseq object (genoXsoil_phyloseq.rds) used for paper analysis of 16S rRNA DNA gene bacterial data. Two xls files of chemical data sampled from bulk and rhizosphere soils where bacteria were sampled, generated using MetaboAnalyst. 

The abstract for the paper generated using this data is as follows:

The rhizosphere microbial and chemical environments vary depending on the species and genotype of the plant host. In addition to the variation of plasticity inherent between genotypes, allelic changes at even a few plant genes can have far-reaching consequences on genotype by environment interactions, and little is known about genotypic sensitivity of the rhizosphere microbial and chemical environments to local vs. foreign soil environments. Our study investigated the rhizosphere microbiome and metabolome of three distinct B. stricta clonal lines in and out of their local soil microbial environment. We found that while soil matrix was the greatest predictor of plant health and rhizosphere microbial and chemical composition, plant genotype was a significant, though not consistent, predictor of those biotic and abiotic factors as well. While some differences could be explained by genotype-specific life histories, others were driven by genotype by environment interactions of plants with their local soil-microbiome environment. Plants in their local soils by and large showed decreased differentiation of the rhizosphere from the bulk soil environment both via differential abundance of bacteria and total number of significantly different chemical features, which could indicate a tradeoff in carbon allocation to convey a fitness advantage to the plant. Further research into the magnitude of host genotypes’ effects on the rhizosphere and into disentangling biotic origins of chemical features will further our understanding of the complicated top-down feedback in the plant-microbial-soil microenvironment of the rhizosphere.
DOI: 10.3535/94b-2wl-yg3
title: Aganisia cyanea (Lindl.) Rchb.f.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/p8g-vnw-kdk
title: Xeranthemum cylindraceum Sm.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/7kb-q6e-mmy
title: Saxifraga paniculata Mill.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/bn0-34f-pn7
title: Arabidopsis halleri (L.) O'Kane & Al-Shehbaz

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/mm8-rgg-7ql
title: Aganisia cyanea (Lindl.) Rchb.f.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/1r3-rcw-dz2
title: Aganisia cyanea (Lindl.) Rchb.f.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/grf-b3k-4aq
title: Centaurea kosaninii Hayek

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/0qv-p3h-sk3
title: Euphorbia seguieriana Neck.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ffm-jf9-yka
title: Sinapis arvensis L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/7js-693-pjq
title: Scirpoides holoschoenus (L.) Soják

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/tzm-1gm-xjr
title: Althaea × taurinensis DC.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/an9-vdz-5sc
title: Cytisus nigricans subsp. nigricans

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/lta-5y9-gn8
title: Stachys palustris L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/xv5-knc-rv7
title: Euphrasia salisburgensis Funck ex Hoppe

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/s65-maz-gkk
title: Carpinus orientalis Mill.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/thp-a6j-w2k
title: Geranium sanguineum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/gq9-0lc-5s6
title: Veronica orchidea Crantz

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/h6w-r9t-n9j
title: Ranunculus repens L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/j5m-yf8-5ah
title: Trifolium dubium Sibth.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/s9h-1re-mp3
title: Galium lucidum All.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/049-0lc-j3h
title: Sesleria uliginosa Opiz

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/cz9-de7-nz1
title: Rumex palustris Sm.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/fak-tsx-tjt
title: Aganisia cyanea (Lindl.) Rchb.f.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ysb-f1f-98b
title: Althaea officinalis L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/hzg-wna-56w
title: Alnus incana (L.) Moench

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.6084/m9.figshare.27880494
title: Experimental data from the study "<b>Environmental context modulates rhizosphere fungal distinctiveness across plant phylogeny and functional traits</b>".

description: This repository contains all the compiled data from the work "<b>Environmental context modulates rhizosphere fungal distinctiveness across plant phylogeny and functional traits</b>".
DOI: 10.3535/fqb-632-dej
title: Platycladus orientalis (L.) Franco

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/sf9-mfa-hpn
title: Herniaria hirsuta L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.6084/m9.figshare.27880494.v4
title: Experimental data from the study "<b>Environmental context modulates rhizosphere fungal distinctiveness across plant phylogeny and functional traits</b>".

description: This repository contains all the compiled data from the work "<b>Environmental context modulates rhizosphere fungal distinctiveness across plant phylogeny and functional traits</b>".
DOI: 10.6084/m9.figshare.27880494.v5
title: Experimental data from the study "<b>Environmental context modulates rhizosphere fungal distinctiveness across plant phylogeny and functional traits</b>".

description: This repository contains all the compiled data from the work "<b>Environmental context modulates rhizosphere fungal distinctiveness across plant phylogeny and functional traits</b>".
DOI: 10.3535/3ah-lzr-yqw
title: Trisetum flavescens (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/fbj-66q-5wa
title: Teucrium chamaedrys subsp. chamaedrys

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/fkn-6sc-9qf
title: Ornithogalum nutans L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/lv7-1mj-ny1
title: Campanula lingulata Waldst. & Kit.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/57j-2n2-bsq
title: Festuca Tourn. ex L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/dgn-4h4-ltx
title: Arabidopsis arenosa (L.) Lawalrée

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/qz9-vwq-6tl
title: Teucrium montanum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/zk2-hth-vhz
title: Orlaya daucorlaya Murb.

description: Digital Specimen for the physical specimen hosted at University of Graz.