cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4833809.v1
title: Impact of different educational interventions on psychosocial well-being of women with a positive high-risk human papillomavirus and normal cervical cytology: a randomised trial

description: <b>Introduction:</b> The aim of this study was to compare the effect of two educational interventions on the psychosocial well-being of Hong Kong Chinese women who have a positive high-risk human papillomavirus (HPV) test and normal cervical cytology. <b>Methods:</b> Participants were randomised into either leaflet group, in which a written HPV factsheet was provided; or counselling group, in which a didactic HPV presentation in person in addition to the factsheet was provided. Women’s psychological conditions were assessed by self-administered questionnaires at pre, post (within one week) and 6 months after the educational interventions. Main outcome measures were psychosocial well-being (cervical cancer worry, anxiety and depression, screening-related anxieties, HPV-related shame) and knowledge of cervical screening and HPV. <b>Results:</b> Data from 121 women (52 in leaflet group; 69 in counselling group) were analysed. There was no significant difference in the psychosocial well-being between the two groups at alltime points. Irrespective of the two educational interventions, cervical cancer worry and anxiety decreased over time. The counselling group had a significantly higher score in knowledge of cervical screening and HPV compared with leaflet group (mean score 4.65 ± 0.19 versus 3.71 ± 0.23, <i>p</i> = 0.002) at post-educational intervention, but there was no significant difference (mean score 4.14 ± 0.22 versus 3.58 ± 0.24, <i>p</i> = 0.084) at 6 months. <b>Discussion:</b> Both educational interventions were comparable in relieving adverse HPV-related psychosocial effects. Combination of counselling and leaflet were more effective than leaflet only in improving women’s knowledge on cervical screening and HPV soon after educational interventions but the benefit was not apparent after 6 months.
DOI: 10.6084/m9.figshare.4833803.v1
title: <i>In silico</i> prediction of drug resistance due to S247R mutation of Influenza H1N1 neuraminidase protein

description: We present here <i>in silico</i> studies on antiviral drug resistance due to a novel mutation of influenza A/H1N1 neuraminidase (NA) protein. Influenza A/H1N1 virus was responsible for a recent pandemic and is currently circulating among the seasonal influenza strains. M2 and NA are the two major viral proteins related to pathogenesis in humans and have been targeted for drug designing. Among them, NA is preferred because the ligand-binding site of NA is highly conserved between different strains of influenza virus. Different mutations of the NA active site residues leading to drug resistance or susceptibility of the virus were studied earlier. We report here a novel mutation (S247R) in the NA protein that was sequenced earlier from the nasopharyngeal swab from Sri Lanka and Thailand in the year 2009 and 2011, respectively. Another mutation (S247N) was already known to confer resistance to oseltamivir. We did a comparative study of these two mutations vis-a-vis the drug-sensitive wild type NA to understand the mechanism of drug resistance of S247N and to predict the probability of the novel S247R mutation to become resistant to the currently available drugs, oseltamivir and zanamivir. We performed molecular docking- and molecular dynamics-based analysis of both the mutant proteins and showed that mutation of S247R affects drug binding to the protein by positional displacement due to altered active site cavity architecture, which in turn reduces the affinity of the drug molecules to the NA active site. Our analysis shows that S247R may have high probability of being resistant.
DOI: 10.6084/m9.figshare.12906746
title: Supplementary Material for: First Trimester Screening for Common Trisomies and Microdeletion 22q11.2 Syndrome Using Cell-Free DNA: A Prospective Clinical Study

description: <b><i>Objectives:</i></b> The aims of the study were to assess the false-positive and uninformative test rate with first trimester cell-free DNA (cfDNA) screening for common trisomies and microdeletion 22q11.2 (22q11.2DS) and to examine women’s attitudes toward such an approach. <b><i>Methods:</i></b> This is a prospective study at the Prenatal Medicine Department of the University of Tübingen, Germany, at 11–13 weeks. In all pregnancies, a detailed ultrasound examination was carried out, followed by a cfDNA analysis for common trisomies and 22q11.2DS. In cases where the cfDNA analysis indicated 22q11.2DS, invasive prenatal diagnostic testing and parental testing were performed. After delivery, a detailed neonatal clinical examination was carried out including further genetic testing. Prior to counselling about the study, we asked the pregnant women who were potentially eligible for the study to anonymously report on their knowledge about 22q11.2DS. <b><i>Results:</i></b> A total of 1,127 pregnancies were included in the final analysis of the study. The first cfDNA test was uninformative in 15 (1.33%) pregnancies. In 10 (0.89%) cases, the test remained uninformative, even after the second blood sample. There were 3 (0.27%) cases with a positive cfDNA test for 22q11.2DS. In all, 983 women returned the anonymous questionnaire prior to study participation. Only 80 (8.1%) women responded that they felt familiar or very familiar with 22q11.2DS. <b><i>Conclusion:</i></b> The addition of 22q11.2DS in first trimester cfDNA screening for common trisomies is feasible. The uninformative test rate for common trisomies and 22q11.2DS is 0.9%, and the false-positive rate for 22q11.2DS is 0.3%. Awareness and education around 22q11.2DS should be improved.
DOI: 10.6084/m9.figshare.4833773
title: Densification mechanisms during reactive spark plasma sintering of Titanium diboride and Zirconium diboride

description: In this study, dense fine-grained ZrB<sub>2</sub> and TiB<sub>2</sub> were fabricated using reactive spark plasma sintering (RSPS) of ball-milled Zr/B and Ti/B mixtures. Systematic investigations were carried out to understand the mechanisms of reactive sintering. Two densification mechanisms were found to be operating during RSPS. The first stage of densification was due to self-propagating high temperature synthesis reaction leading to formation of ZrB<sub>2</sub> and TiB<sub>2</sub> compacts having relative density of ~48 and ~65%, respectively. The second stage of densification occurred at temperatures more than 1100 °C and resulted in final relative density of more than 98%. Electron backscatter diffraction and electron microscopy studies on interrupted RSPS samples as well as dense samples showed deformed grains and presence of slip steps while grain orientation spread map and pole figure analysis confirmed plastic flow. Plastic flow-aided pore closure is shown as major mechanism during reactive sintering.
DOI: 10.6084/m9.figshare.4833704
title: Human Melanoma Interactome Set (SKCM, T and B Lymphocyte)

description: Human melanoma interactome set, including SKCM, T and B Lymphocyte interactomes
DOI: 10.6084/m9.figshare.4833704.v1
title: Human Melanoma Interactome Set (SKCM, T and B Lymphocyte)

description: Human melanoma interactome set, including SKCM, T and B Lymphocyte interactomes
DOI: 10.6084/m9.figshare.4833641
title: Nasir_and_Caetano-Anolles_2015.zip

description: HMM assignments are available for download for a total of 3,440 viruses analyzed in Nasir and Caetano-Anolles (Science Advances, 2015).
DOI: 10.6084/m9.figshare.4833641.v1
title: Nasir_and_Caetano-Anolles_2015.zip

description: HMM assignments are available for download for a total of 3,440 viruses analyzed in Nasir and Caetano-Anolles (Science Advances, 2015).
DOI: 10.6084/m9.figshare.4833587
title: High-Throughput DFT Calculations of Formation Energy, Stability and Oxygen Vacancy Formation Energy of ABO3 Perovskites

description: For a full description of the dataset, please look at the scientific data project.
DOI: 10.6084/m9.figshare.4833590
title: Data from: Adaptation of the Arizona Cognitive Task Battery for Use With the Ts65Dn Mouse Model (Mus musculus) of Down Syndrome

description: Data for published manuscript. R scripts call data on Github repository to perform statistical analyses and graphing functions. Data are those used to generate statistics and graphs for the manuscript.
DOI: 10.6084/m9.figshare.4833593
title: Morphology and photometric redshift catalog

description: Catalog of ~3,000,000 galaxies with their broad morphology and photometric redshift.
DOI: 10.6084/m9.figshare.4833590.v1
title: Data from: Adaptation of the Arizona Cognitive Task Battery for Use With the Ts65Dn Mouse Model (Mus musculus) of Down Syndrome

description: Data for published manuscript. R scripts call data on Github repository to perform statistical analyses and graphing functions. Data are those used to generate statistics and graphs for the manuscript.
DOI: 10.6084/m9.figshare.4833593.v1
title: Morphology and photometric redshift catalog

description: Catalog of ~3,000,000 galaxies with their broad morphology and photometric redshift.
DOI: 10.6084/m9.figshare.4833548
title: Influence of localised smooth steps on the instability of a boundary layer

description: M files and metadata.
DOI: 10.6084/m9.figshare.4833551
title: waveforms of simulated ground vibration from trains

description: Ground vibration waveforms calculated by two numerical models, a whole-system model and a two-step model, to show the error caused by the latter.<br>
DOI: 10.6084/m9.figshare.4833548.v1
title: Influence of localised smooth steps on the instability of a boundary layer

description: M files and metadata.
DOI: 10.6084/m9.figshare.4833551.v1
title: waveforms of simulated ground vibration from trains

description: Ground vibration waveforms calculated by two numerical models, a whole-system model and a two-step model, to show the error caused by the latter.<br>
DOI: 10.6084/m9.figshare.4833482
title: MongoDB dump (compressed)

description: This mongodump contains four collections associated with http://dx.doi.org/10.1021/acscentsci.7b00064 :<br>reaction_examples/lowe_1976-2013_USPTOgrants - a collection of reaction SMILES extracted from USPTO grants by Daniel Lowe<br>reaction_examples/lowe_1976-2013_USPTOgrants_reactions - an incomplete collection of reactions extracted from USPTO grants by Daniel Lowe, containing some additional information about reagents/catalysts/solvents where known<br>askcos_transforms/lowe_refs_general_v3 - a collection of highly-general reaction SMARTS strings extracted from the USPTO smiles<br>prediction/candidate_edits_8_9_16 - a collection of reaction examples with possible products enumerated, used as input for a machine learning model
DOI: 10.6084/m9.figshare.7071974
title: Interview - Matthew Brown

description: This dataset 'Interview - Matthew Brown’ is a component of a Doctor Of Philosophy conducted by candidate Alexander Hayes (3919493) titled 'The Socioethical Implications Of Body Worn Computers: An Ethnographic Study'. <br>The full thesis can be accessed at https://ro.uow.edu.au/theses1/853<br>This research was conducted in the Faculty of Engineering and Information Systems, School of Computing and Information Technology (SCIT), University of Wollongong with research strength Innovation in Business & Social Research under Principal Supervisor Professor Katina Michael (University of Wollongong) and Associate Supervisor Dr Teemu Leinonen (Aalto University Finland). This thesis explores the socioethical implications of body worn computers (BWC) using an ethnographic approach. Furthermore, a subset, body worn cameras (BWCs), combines data with value added constancy through Location Based Services (LBS) over wireless network connections. The aim of this investigation was to engage global leaders from transdisciplinary stakeholder groups in semi-structured interviews, conversations and events, situating a review of the social impact and ethical implications of BWCs. A critical discourse analysis using a Foucauldian approach reveals power relations, which are then infused through narrative with unique intercultural perspectives, differentiating ‘location’ from ‘place’. The author of this study has subsequently identified through Grounded Theory that BWCs are causal agency for disconnect from proper culture which can be addressed through the application of Ngikalikarra, a unique framework for empathetic understanding of place and community engagement.
DOI: 10.6084/m9.figshare.7071974.v1
title: Interview - Matthew Brown

description: This dataset 'Interview - Matthew Brown’ is a component of a Doctor Of Philosophy conducted by candidate Alexander Hayes (3919493) titled 'The Socioethical Implications Of Body Worn Computers: An Ethnographic Study'. <br>The full thesis can be accessed at https://ro.uow.edu.au/theses1/853<br>This research was conducted in the Faculty of Engineering and Information Systems, School of Computing and Information Technology (SCIT), University of Wollongong with research strength Innovation in Business & Social Research under Principal Supervisor Professor Katina Michael (University of Wollongong) and Associate Supervisor Dr Teemu Leinonen (Aalto University Finland). This thesis explores the socioethical implications of body worn computers (BWC) using an ethnographic approach. Furthermore, a subset, body worn cameras (BWCs), combines data with value added constancy through Location Based Services (LBS) over wireless network connections. The aim of this investigation was to engage global leaders from transdisciplinary stakeholder groups in semi-structured interviews, conversations and events, situating a review of the social impact and ethical implications of BWCs. A critical discourse analysis using a Foucauldian approach reveals power relations, which are then infused through narrative with unique intercultural perspectives, differentiating ‘location’ from ‘place’. The author of this study has subsequently identified through Grounded Theory that BWCs are causal agency for disconnect from proper culture which can be addressed through the application of Ngikalikarra, a unique framework for empathetic understanding of place and community engagement.
DOI: 10.6073/pasta/1d5c20a0f7a6b6de08438b841fe5b910
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 1 meteorological station: 1-hour summary data: 2017 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, and wind direction summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Air temperature, relative humidity, wind speed and wind direction are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.4833149
title: 2003 CCHS Dataset and Codeset

description: 2003 Canadian Community Health Survey minimal dataset, along with corresponding legend for coding
DOI: 10.6084/m9.figshare.4833134
title: R functions for applying robust statistical methods

description: The file Rallfun-v33.txt contains a vast collection of R functions for applying modern robust statistical methods. <br>The modern techniques provide substantially better methods for dealing with outliers, skewed distributions and heteroscedasticity. Descriptions and illustrations are contained in my books:<br><br>Wilcox, R. R. (2017). Introduction to Robust Estimation and<br>Hypothesis Testing. 4th Ed. San Diego: Academic Press.<br><br> Wilcox, R. R. (2017) Understanding and Applying Basic Statistical Methods Using R. New York: Wiley.<br> <br> Wilcox, R. R. (in press). Modern Statistics for the Social and<br> Behavioral Sciences: A Practical Introduction. 2nd Ed.<br> New York: Chapman \& Hall/CRC press.<br> (Due out in April 2017.) <br>
DOI: 10.6084/m9.figshare.4833146
title: 2003 CCHS

description: Canadian Community Health Survey, 2003. Data specific to assess medication use in the context of oral health, dental pain, and demographic, economic, and social factors
DOI: 10.6084/m9.figshare.4833134.v1
title: R functions for applying robust statistical methods

description: The file Rallfun-v33.txt contains a vast collection of R functions for applying modern robust statistical methods. <br>The modern techniques provide substantially better methods for dealing with outliers, skewed distributions and heteroscedasticity. Descriptions and illustrations are contained in my books:<br><br>Wilcox, R. R. (2017). Introduction to Robust Estimation and<br>Hypothesis Testing. 4th Ed. San Diego: Academic Press.<br><br> Wilcox, R. R. (2017) Understanding and Applying Basic Statistical Methods Using R. New York: Wiley.<br> <br> Wilcox, R. R. (in press). Modern Statistics for the Social and<br> Behavioral Sciences: A Practical Introduction. 2nd Ed.<br> New York: Chapman \& Hall/CRC press.<br> (Due out in April 2017.) <br>
DOI: 10.6084/m9.figshare.4833146.v1
title: 2003 CCHS

description: Canadian Community Health Survey, 2003. Data specific to assess medication use in the context of oral health, dental pain, and demographic, economic, and social factors
DOI: 10.6084/m9.figshare.4832693
title: Metabolite BridgeDb ID Mapping Database (20170408)

description: BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 150, and Wikidata (8 April 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.
DOI: 10.6084/m9.figshare.4832690
title: Non-unique sgRNAs in GeCKOv2 human CRISPR library

description: A table of sgRNAs from the GeCKOv2 human library (Sanjana*, Shalem* and Zhang, Nature Methods, 2014) that target multiple genes and/or miRNAs
DOI: 10.6084/m9.figshare.4832648
title: Effects of exogenous GLP-2 and distal bowel resection on intestinal and systemic adaptive responses in rats Raw Data

description: Raw data for plasma hormone levels, body composition, gross and microscopic gut morphometry, PCR and ENS.
DOI: 10.6084/m9.figshare.4832648.v1
title: Effects of exogenous GLP-2 and distal bowel resection on intestinal and systemic adaptive responses in rats Raw Data

description: Raw data for plasma hormone levels, body composition, gross and microscopic gut morphometry, PCR and ENS.
DOI: 10.6084/m9.figshare.4832612.v1
title: PERU MIGRANT Study | Baseline and 5yr follow-up dataset

description: This is an update of a prior dataset publication containing baseline and 5-year follow-up data from the <b>PERU MIGRANT Study </b>(PEru's Rural to Urban MIGRANTs Study).<br>The <b>PERU MIGRANT Study</b> was designed to investigate the magnitude of differences between rural-to-urban migrant and non-migrant groups in specific cardiovascular risk factors. Three groups were selected: i) Rural, people who have always have lived in a rural environment; ii) Rural-urban, people who migrated from rural to urban areas; and, iii) Urban, people who have always lived in a urban environment.<br><b>PERU MIGRANT Study protocol, instruments and variables</b> are described in full in:<br>Miranda JJ, Gilman RH, García HH, Smeeth L. The effect on cardiovascular risk factors of migration from rural to urban areas in Peru: PERU MIGRANT Study. <i>BMC Cardiovasc Disord</i> 2009;9:23. <br><b>PERU MIGRANT Study baseline dataset</b> is available at:https://figshare.com/articles/PERU_MIGRANT_Study_Baseline_dataset/3125005<br><br><b>Main findings of the baseline study</b>:Miranda JJ, Gilman RH, Smeeth L. Differences in cardiovascular risk factors in rural, urban and rural-to-urban migrants in Peru. <i>Heart</i> 2011;97(10):787-96. <br><b>Main findings of the 5-yr follow-up study</b>: Carrillo-Larco RM, Bernabé-Ortiz A, Pillay TD, Gilman RH, Sanchez JF, Poterico JA, Quispe R, Smeeth L, Miranda JJ. Obesity risk in rural, urban and rural-to-urban migrants: prospective results of the PERU MIGRANT study. <i>Int J Obes (Lond)</i> 2016;40(1):181-5. <br>Bernabe-Ortiz A, Sanchez JF, Carrillo-Larco RM, Gilman RH, Poterico JA, Quispe R, Smeeth L, Miranda JJ. Rural-to-urban migration and risk of hypertension: longitudinal results of the PERU MIGRANT study. <i>J Hum Hypertens</i> 2017;31(1):22-28. <br>Lazo-Porras M, Bernabe-Ortiz A, Málaga G, Gilman RH, Acuña-Villaorduña A, Cardenas-Montero D, Smeeth L, Miranda JJ. Low HDL cholesterol as a cardiovascular risk factor in rural, urban, and rural-urban migrants: PERU MIGRANT cohort study. <i>Atherosclerosis</i> 2016;246:36-43.<br><br>Burroughs Pena MS, Bernabé-Ortiz A, Carrillo-Larco RM, Sánchez JF, Quispe R, Pillay TD, Málaga G, Gilman RH, Smeeth L, Miranda JJ. Migration, urbanisation and mortality: 5-year longitudinal analysis of the PERU MIGRANT study. <i>J Epidemiol Community Health</i> 2015;69(7):715-8.
DOI: 10.6084/m9.figshare.4832612.v2
title: PERU MIGRANT Study | Baseline and 5yr follow-up dataset

description: This is an update of a prior dataset publication containing baseline and 5-year follow-up data from the <b>PERU MIGRANT Study </b>(PEru's Rural to Urban MIGRANTs Study).<br>The <b>PERU MIGRANT Study</b> was designed to investigate the magnitude of differences between rural-to-urban migrant and non-migrant groups in specific cardiovascular risk factors. Three groups were selected: i) Rural, people who have always have lived in a rural environment; ii) Rural-urban, people who migrated from rural to urban areas; and, iii) Urban, people who have always lived in a urban environment.<br><b>PERU MIGRANT Study protocol, instruments and variables</b> are described in full in:<br>Miranda JJ, Gilman RH, García HH, Smeeth L. The effect on cardiovascular risk factors of migration from rural to urban areas in Peru: PERU MIGRANT Study. <i>BMC Cardiovasc Disord</i> 2009;9:23. <br><b>PERU MIGRANT Study baseline dataset</b> is available at:https://figshare.com/articles/PERU_MIGRANT_Study_Baseline_dataset/3125005<br><br><b>Main findings of the baseline study</b>:Miranda JJ, Gilman RH, Smeeth L. Differences in cardiovascular risk factors in rural, urban and rural-to-urban migrants in Peru. <i>Heart</i> 2011;97(10):787-96. <br><b>Main findings of the 5-yr follow-up study</b>: Carrillo-Larco RM, Bernabé-Ortiz A, Pillay TD, Gilman RH, Sanchez JF, Poterico JA, Quispe R, Smeeth L, Miranda JJ. Obesity risk in rural, urban and rural-to-urban migrants: prospective results of the PERU MIGRANT study. <i>Int J Obes (Lond)</i> 2016;40(1):181-5. <br>Bernabe-Ortiz A, Sanchez JF, Carrillo-Larco RM, Gilman RH, Poterico JA, Quispe R, Smeeth L, Miranda JJ. Rural-to-urban migration and risk of hypertension: longitudinal results of the PERU MIGRANT study. <i>J Hum Hypertens</i> 2017;31(1):22-28. <br>Lazo-Porras M, Bernabe-Ortiz A, Málaga G, Gilman RH, Acuña-Villaorduña A, Cardenas-Montero D, Smeeth L, Miranda JJ. Low HDL cholesterol as a cardiovascular risk factor in rural, urban, and rural-urban migrants: PERU MIGRANT cohort study. <i>Atherosclerosis</i> 2016;246:36-43.<br><br>Burroughs Pena MS, Bernabé-Ortiz A, Carrillo-Larco RM, Sánchez JF, Quispe R, Pillay TD, Málaga G, Gilman RH, Smeeth L, Miranda JJ. Migration, urbanisation and mortality: 5-year longitudinal analysis of the PERU MIGRANT study. <i>J Epidemiol Community Health</i> 2015;69(7):715-8.
DOI: 10.6084/m9.figshare.4832344
title: Nasal Colonization and Bacterial Contamination of Mobile Phones Carried by Medical Staff in the Operating Room

description: <b>The characteristics of including medical staff; proportion and distribution of isolated bacteria; and genotyping of isolated staphylococcus aureus.</b>