cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14403782
title: Proteome database of Salmonella typhimurium strain LT2

description: <i>Salmonella typhimurium</i> is a Gram-negative, enteric pathogen capable of causing serious illness in humans. An intracellular pathogen, <i>S. typhimurium</i> originally evolved from <i>Escherichia coli</i>, and the reasons the divergence in speciation took place remains mysterious considering that both species share dramatically different lifestyles. <i>S. typhimurium</i> is motile through the presence of peritrichous flagella on the cell surface. Of greater importance is that <i>S. typhimurium</i> is capable of adopting different metabolic modes through its facultative anaerobic metabolic capability which endows the bacterium to survive under both aerobic and anaerobic environments. This work sought to provide fundamental information about the proteome of <i>S. typhimurium</i> strain LT2 by parsing its annotated proteome file downloaded from UniProt through an in-house MATLAB proteome analysis software. Comprising protein name, amino acid sequence, and calculated variables such as number of residues, molecular weight and nucleotide sequence, the proteome database of <i>S. typhimurium</i> should provide a useful resource for further investigation into mysteries concerning the pathogenic mechanisms of this bacterium.
DOI: 10.6084/m9.figshare.14403791
title: Epidemiological and clinical characteristics of COVID-19 infection outside Wuhan, China: a multicentre study

description: Numerous cases of coronavirus disease 2019 (COVID-19) have been confirmed worldwide. Herein, we report the epidemiological and clinical features of 478 confirmed cases from a multicenter study in four cities in China, excluding Wuhan. We enrolled 478 patients who were transferred by Emergency Medical Service to designated hospitals in four major cities including Beijing, Chongqing, Jinan and Nanning in China.
DOI: 10.6084/m9.figshare.14403791.v1
title: Epidemiological and clinical characteristics of COVID-19 infection outside Wuhan, China: a multicentre study

description: Numerous cases of coronavirus disease 2019 (COVID-19) have been confirmed worldwide. Herein, we report the epidemiological and clinical features of 478 confirmed cases from a multicenter study in four cities in China, excluding Wuhan. We enrolled 478 patients who were transferred by Emergency Medical Service to designated hospitals in four major cities including Beijing, Chongqing, Jinan and Nanning in China.
DOI: 10.25934/00003077.1
title: IPD datapackage for study 'A Phase 2, Randomized Withdrawal Study of the Analgesic Efficacy and Safety of Hydrocodone/Acetaminophen Extended Release Compared to Placebo in Subjects With Chronic Low Back Pain' and research request: 'Predictors of placebo response in opioid trials for patients with Chronic Primary Pain – An Individual-Patient Data (IPD) Meta-Analysis'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00006024
title: Predictors of placebo response in opioid trials for patients with Chronic Primary Pain – An Individual-Patient Data (IPD) Meta-Analysis

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.17632/pdwr8smyhz.2
title: Grain legume-cereal intercropping enhances the use of soil-derived and bio-logically fixed nitrogen in temperate agroecosystems. A meta-analysis.

description: In Rodriguez et al. we quantified the effect of grain legume-cereal intercropping on the use of nitrogen resources in temperate agroecosystems, focusing on symbiotic nitrogen fixation and soil-derived nitrogen acquisition using a meta-analysis.
DOI: 10.25934/00003048.1
title: IPD datapackage for study 'A Phase 3, Open-Label Period Followed by a Randomized, Double-blind, Placebo-controlled Study of the Analgesic Efficacy of Extended-release Hydrocodone/Acetaminophen (Vicodin CR) Compared to Placebo in Subjects With Chronic Low Back Pain' and research request: 'Predictors of placebo response in opioid trials for patients with Chronic Primary Pain – An Individual-Patient Data (IPD) Meta-Analysis'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00003049.1
title: IPD datapackage for study 'A Phase 3, Open-Label Period Followed by a Randomized, Double-blind Placebo-controlled Study of the Analgesic Efficacy of Extended-release Hydrocodone/Acetaminophen (Vicodin CR) Compared to Placebo in Subjects With Chronic Low Back Pain' and research request: 'Predictors of placebo response in opioid trials for patients with Chronic Primary Pain – An Individual-Patient Data (IPD) Meta-Analysis'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.17608/k6.auckland.14403827.v1
title: Experimental Data for "Spatial dependence of dynamic nonlinear rock weakening at the Alpine Fault, New Zealand"

description: This .zip file contains all the raw experimental data presented in the manuscript "Spatial dependence of dynamic nonlinear rock weakening at the Alpine Fault, New Zealand". Included are the laser ultrasonics scans for the schist, protomylonite, mylonite, ultramylonite, and three cataclasites at atmospheric pressure, along with the data recorded under pressure for two of the cataclasites. All experimental metadata is saved as json files.<br><br>The software used to open, process, analyse, and plot this data is available this same figshare collection. Much of the analysis software relies on the Python PlaceScan package, available at https://github.com/jsimpsonUoA/PlaceScan. All experimental data was acquired with PLACE, the lab automation software (see https://github.com/PALab/place).<br>
DOI: 10.17608/k6.auckland.14403827
title: Experimental Data for "Spatial dependence of dynamic nonlinear rock weakening at the Alpine Fault, New Zealand"

description: This .zip file contains all the raw experimental data presented in the manuscript "Spatial dependence of dynamic nonlinear rock weakening at the Alpine Fault, New Zealand". Included are the laser ultrasonics scans for the schist, protomylonite, mylonite, ultramylonite, and three cataclasites at atmospheric pressure, along with the data recorded under pressure for two of the cataclasites. All experimental metadata is saved as json files.<br><br>The software used to open, process, analyse, and plot this data is available this same figshare collection. Much of the analysis software relies on the Python PlaceScan package, available at https://github.com/jsimpsonUoA/PlaceScan. All experimental data was acquired with PLACE, the lab automation software (see https://github.com/PALab/place).<br>
DOI: 10.6084/m9.figshare.13779562.v1
title: Source Data.xlsx

description: Source data for the figures in "A novel Bacillus thuringiensis Cry protein controls soybean cyst nematode in transgenic soybean plants".<br>
DOI: 10.25934/00002996.1
title: IPD datapackage for study 'A Phase 3, Open-Label Period Followed By a Randomized, Double-Blind, Placebo-Controlled Study of the Analgesic Efficacy and Safety of Extended Release Hydrocodone/Acetaminophen (Vicodin® CR) Compared to Placebo in Subjects With Chronic Low Back Pain' and research request: 'Predictors of placebo response in opioid trials for patients with Chronic Primary Pain – An Individual-Patient Data (IPD) Meta-Analysis'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.6084/m9.figshare.10032227.v2
title: MITgcm_configuration

description: MITgcm configuration.If you use these data to publish a scientifc paper, please cite our paper for the data source and at the same send us an email to inform us (wangshuya@stu.ouc.edu.cn, chenxu001@ouc.edu.cn)<br>
DOI: 10.5281/zenodo.4682249
title: Supplementary material for: Lala, J., Bazo, J., Anand, V., and Block, P. (2021). Optimizing forecast-based actions for extreme rainfall events.

description: Supplementary material for Lala, J., Bazo, J., Anand, V., and Block, P. (2021). Optimizing forecast-based actions for extreme rainfall events. This includes data on forecasts and precipitation, MATLAB scripts for running the analysis, and details of the EAP including costs.
DOI: 10.5281/zenodo.4682248
title: Supplementary material for: Lala, J., Bazo, J., Anand, V., and Block, P. (2021). Optimizing forecast-based actions for extreme rainfall events.

description: Supplementary material for Lala, J., Bazo, J., Anand, V., and Block, P. (2021). Optimizing forecast-based actions for extreme rainfall events. This includes data on forecasts and precipitation, MATLAB scripts for running the analysis, and details of the EAP including costs.
DOI: 10.25919/c95n-wy15
title: Hen personality testing

description: Data of behavioural tests conducted on pullets and hens to examine the impacts of rearing enrichments and correlations with subsequent range use.
DOI: 10.6084/m9.figshare.14398115
title: Discrimination of Crop Varieties by Remote Sensing: A Systematic Review of Literature

description: Dataset to publish
DOI: 10.6084/m9.figshare.14398115.v1
title: Discrimination of Crop Varieties by Remote Sensing: A Systematic Review of Literature

description: Dataset to publish
DOI: 10.5281/zenodo.4681149
title: GRIST AMIP

description: AMIP runs for documents.
DOI: 10.5281/zenodo.4681148
title: GRIST AMIP

description: AMIP runs for documents.
DOI: 10.25505/fiz.icsd.cc27q28b
title: CSD 2076791: Experimental Crystal Structure Determination

description: Related Article: Vahobjon Sabirov, Mannon Jumaev, Djumanali Irkabaev, and Jamshid Ashurov|2021|ICSD Communication|||
DOI: 10.6084/m9.figshare.14403896
title: The GFF file of wheat generated with the PacBio transcripts data and genome annotation of wheat

description: This dataset is a gff file generated with the PacBio full-length transcripts and the wheat genome annotation.<br>*Feature为gene的attributes信息：Type=GeneModel表示已知的Gene Model gene，Type=NovelLoci表示PacBio检测到的新loci*Feature为transcript / mRNA的attributes信息：Type=KnownLoci_KnownIsoform，KnownLoci_NovelIsoform，NovelLoci_NovelIsoform分别表示已知Gene Model isoform，已知Gene Model gene的新isoform，新loci的isoform*每个isoform会列出对应的PacBio ID及FLNC支持数；若GeneModel isoform未在PacBio数据中检测到，则展示为“PacBioID=*;FLNC=0;”<br>
DOI: 10.6084/m9.figshare.14403896.v1
title: The GFF file of wheat generated with the PacBio transcripts data and genome annotation of wheat

description: This dataset is a gff file generated with the PacBio full-length transcripts and the wheat genome annotation.<br>*Feature为gene的attributes信息：Type=GeneModel表示已知的Gene Model gene，Type=NovelLoci表示PacBio检测到的新loci*Feature为transcript / mRNA的attributes信息：Type=KnownLoci_KnownIsoform，KnownLoci_NovelIsoform，NovelLoci_NovelIsoform分别表示已知Gene Model isoform，已知Gene Model gene的新isoform，新loci的isoform*每个isoform会列出对应的PacBio ID及FLNC支持数；若GeneModel isoform未在PacBio数据中检测到，则展示为“PacBioID=*;FLNC=0;”<br>
DOI: 10.6084/m9.figshare.14403899
title: Magnesium isotope constraints on contributions of recycled oceanic crust and lithospheric mantle to generation of intraplate basalts in a big mantle wedge

description: the dataset contains major, trace, Sr-Nd isotopic data and modeling parameter
DOI: 10.6084/m9.figshare.14403899.v1
title: Magnesium isotope constraints on contributions of recycled oceanic crust and lithospheric mantle to generation of intraplate basalts in a big mantle wedge

description: the dataset contains major, trace, Sr-Nd isotopic data and modeling parameter
DOI: 10.6084/m9.figshare.13779562
title: Source Data.xlsx

description: Source data for the figures in "A novel Bacillus thuringiensis Cry protein controls soybean cyst nematode in transgenic soybean plants".<br>
DOI: 10.5281/zenodo.4615759
title: L2 Arabic Pronunciation Data

description: Phonetic dataset used in El-Khaissi's (2018) preliminary investigation into the production of /dˤ/and /d/ by second-language (L2) Arabic learners at the Australian National University (ANU), and two native Arabic speakers. Reference El-Khaissi, C. (2018). <em>A Comparative Phonetic Analysis of Native and Non-native Arabic Speakers</em>. Presented at the Three Languages – Three Cultures: Narratives from the Middle East Conference, 22-23 November, Australian National University (ANU), Canberra.
DOI: 10.5281/zenodo.4451449
title: L2 Arabic Pronunciation Data

description: Phonetic dataset used in El-Khaissi's (2018) preliminary investigation into the production of /dˤ/and /d/ by second-language (L2) Arabic learners at the Australian National University (ANU), and two native Arabic speakers. Reference El-Khaissi, C. (2018). <em>A Comparative Phonetic Analysis of Native and Non-native Arabic Speakers</em>. Presented at the Three Languages – Three Cultures: Narratives from the Middle East Conference, 22-23 November, Australian National University (ANU), Canberra.
DOI: 10.6084/m9.figshare.14403905
title: The comparison between the PacBio full-length transcripts of wheat with genome annotation

description: We mapped the FLNC sequences to the wheat genome using GMAP software. This dataset shows the results of mapping these transcripts to the genome.
DOI: 10.6084/m9.figshare.14403905.v1
title: The comparison between the PacBio full-length transcripts of wheat with genome annotation

description: We mapped the FLNC sequences to the wheat genome using GMAP software. This dataset shows the results of mapping these transcripts to the genome.
DOI: 10.5281/zenodo.3925130
title: Coral community composition and carbonate production in an urbanized seascape

description: Survey data in PRIMER format
DOI: 10.5281/zenodo.3925129
title: Coral community composition and carbonate production in an urbanized seascape

description: Survey data in PRIMER format
DOI: 10.5281/zenodo.3834170
title: Mitogenomes reveal alternative initiation codons and lineage-specific gene order conservation in echinoderms

description: Sample information, gene alignments and concatenated matrix
DOI: 10.5281/zenodo.3834169
title: Mitogenomes reveal alternative initiation codons and lineage-specific gene order conservation in echinoderms

description: Sample information, gene alignments and concatenated matrix
DOI: 10.6084/m9.figshare.14403935.v1
title: Simultaneous SGLT2 Inhibition and Caloric Restriction Improves Insulin Resistance and Kidney Function in OLETF Rats (Data)

description: Metabolomics dataset1) Raw data2) Transformed data3) p-values and FDR by comparison<br>
DOI: 10.6084/m9.figshare.14403935
title: Simultaneous SGLT2 Inhibition and Caloric Restriction Improves Insulin Resistance and Kidney Function in OLETF Rats (Data)

description: Metabolomics dataset1) Raw data2) Transformed data3) p-values and FDR by comparison<br>
DOI: 10.6084/m9.figshare.14403926
title: Data from: Historical Indigenous Land-Use Explains Plant Functional Trait Diversity

description: Human land-use legacies have long-term effects on plant community composition and<br>ecosystem function. While ancient and historical land-use is known to affect biodiversity<br>patterns, it is unknown whether such legacies affect other plant community properties<br>such as the diversity of functional traits. Functional traits are a critical tool for<br>understanding ecological communities because they give insights into community<br>assembly processes as well as potential species interactions and other ecosystem<br>functions. Here, we present the first systematic study evaluating how plant functional trait<br>distributions and functional diversity are affected by ancient and historical Indigenous<br>forest management in the Pacific Northwest. We compare forest garden ecosystems —<br>managed perennial fruit and nut communities associated exclusively with archaeological<br>village sites — with surrounding periphery conifer forests. We find that forest gardens<br>have substantially greater plant and functional trait diversity than periphery forests even<br>more than 150 years after management ceased. Forests managed by Indigenous peoples<br>in the past now provide diverse resources and habitat for animals and pollinators and are<br>more productive than naturally forested ecosystems. Although ecological studies rarely<br>incorporate Indigenous land-use legacies, the positive effects of Indigenous land-use on<br>contemporary functional and taxonomic diversity that we observe provide some of the<br>strongest evidence yet that Indigenous management practices are tied to ecosystem health<br>and resilience.<br>
DOI: 10.5517/ccdc.csd.cc25qrxl
title: CCDC 2017880: Experimental Crystal Structure Determination

description: Related Article: Veeranjaneyulu Gannedi, Bharath Kumar Villuri, Sivakumar N. Reddy, Chiao-Chu Ku, Chi-Huey Wong, Shang-Cheng Hung|2021|J.Org.Chem.|86|4977|doi:10.1021/acs.joc.0c02888
DOI: 10.5517/ccdc.csd.cc26rqtj
title: CCDC 2048598: Experimental Crystal Structure Determination

description: Related Article: Hengbo Li, Zhenyu Ji, Cheng Chen, Zhengyi Di, Yongsheng Liu, Mingyan Wu|2021|Cryst.Growth Des.|21|2277|doi:10.1021/acs.cgd.0c01701
DOI: 10.5517/ccdc.csd.cc26s6cl
title: CCDC 2049049: Experimental Crystal Structure Determination

description: Related Article: Danqing Zheng, Stefanie Plöger, Constantin G. Daniliuc, Armido Studer|2021|Angew.Chem.,Int.Ed.|60|8547|doi:10.1002/anie.202016955
DOI: 10.6084/m9.figshare.14227028.v1
title: Strategy for balancing the preservation of area, shape, and topology during polygon-to-raster conversion

description: We proposed a balanced strategy for decreasing multiple types of rasterization errors to preserve the spatial attributes of the area, shape, and topology during polygon-to-raster conversion. Starting with the outcome of the conventional rasterization algorithm, the proposed strategy first attempts to reassign as few raster cells as possible to compensate for the loss in the shape attributes. The strategy then corrects the topological changes according to the real topologies of vector polygons. Finally, the areas in the raster regions are coordinated with those of the corresponding polygons to preserve the area attributes. <br>
DOI: 10.18112/openneuro.ds003610.v1.0.0
title: MPRAGE Hypersense test data
DOI: 10.6084/m9.figshare.14403983
title: Additional file 13 of Isolation and characterisation of ΦcrAss002, a crAss-like phage from the human gut that infects Bacteroides xylanisolvens

description: Additional file 12: Table S6. Primer sequences specific to each crAss-like phage strains detected following sequencing of subject ID: 924 faeces post fermentation.
DOI: 10.6084/m9.figshare.14403986
title: Additional file 14 of Isolation and characterisation of ΦcrAss002, a crAss-like phage from the human gut that infects Bacteroides xylanisolvens

description: Additional file 13: Table S7. Primers specific to the SIHUMI bacterial community, ΦcrAss001 host B. intestinalis 919/174, and ΦcrAss002 host B. xylanisolvens APCS1/XY.
DOI: 10.6084/m9.figshare.14403986.v1
title: Additional file 14 of Isolation and characterisation of ΦcrAss002, a crAss-like phage from the human gut that infects Bacteroides xylanisolvens

description: Additional file 13: Table S7. Primers specific to the SIHUMI bacterial community, ΦcrAss001 host B. intestinalis 919/174, and ΦcrAss002 host B. xylanisolvens APCS1/XY.
DOI: 10.6084/m9.figshare.14403995.v1
title: Additional file 4 of Isolation and characterisation of ΦcrAss002, a crAss-like phage from the human gut that infects Bacteroides xylanisolvens

description: Additional file 3: Table S1. Bacterial isolates identified following Sanger sequencing. The isolates were enriched from subject ID: 924 faeces with the aid of antibiotic selective enrichment to promote Bacteroidales growth. FAA; Fastidious anaerobic agar, YCFA; yeast extract, casitone, fatty acids agar, CBA; Columbia blood agar.
DOI: 10.6084/m9.figshare.14403995
title: Additional file 4 of Isolation and characterisation of ΦcrAss002, a crAss-like phage from the human gut that infects Bacteroides xylanisolvens

description: Additional file 3: Table S1. Bacterial isolates identified following Sanger sequencing. The isolates were enriched from subject ID: 924 faeces with the aid of antibiotic selective enrichment to promote Bacteroidales growth. FAA; Fastidious anaerobic agar, YCFA; yeast extract, casitone, fatty acids agar, CBA; Columbia blood agar.
DOI: 10.6084/m9.figshare.14403998.v1
title: Additional file 5 of Isolation and characterisation of ΦcrAss002, a crAss-like phage from the human gut that infects Bacteroides xylanisolvens

description: Additional file 4: Table S2. Functional annotation of ΦcrAss002 protein-coding genes using HHpred.
DOI: 10.6084/m9.figshare.14404001
title: Additional file 6 of Isolation and characterisation of ΦcrAss002, a crAss-like phage from the human gut that infects Bacteroides xylanisolvens

description: Additional file 5: Table S3. Metadata associated with ΦcrAss002 and related phages of candidate genus IV identified by in silico analyses.
DOI: 10.6084/m9.figshare.14403998
title: Additional file 5 of Isolation and characterisation of ΦcrAss002, a crAss-like phage from the human gut that infects Bacteroides xylanisolvens

description: Additional file 4: Table S2. Functional annotation of ΦcrAss002 protein-coding genes using HHpred.
DOI: 10.6084/m9.figshare.14404001.v1
title: Additional file 6 of Isolation and characterisation of ΦcrAss002, a crAss-like phage from the human gut that infects Bacteroides xylanisolvens

description: Additional file 5: Table S3. Metadata associated with ΦcrAss002 and related phages of candidate genus IV identified by in silico analyses.
DOI: 10.6084/m9.figshare.14404067
title: Additional file 2 of New Indomalayan Nebularmis species (Heterotardigrada: Echiniscidae) provoke a discussion on its intrageneric diversity

description: Additional file 2. 18S rRNA alignment.
DOI: 10.6084/m9.figshare.14404070
title: Additional file 3 of New Indomalayan Nebularmis species (Heterotardigrada: Echiniscidae) provoke a discussion on its intrageneric diversity

description: Additional file 3. 28S rRNA alignment.