cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5441/001/1.71r7pp6q/2
title: LifeTrack White Stork Vorarlberg_2016-2019-acceleration

description: Cheng Y, Fiedler W, Wikelski M, Flack A (2019) "Closer-to-home" strategy benefits juvenile survival in a long-distance migratory bird. Ecology and Evolution. doi:10.1002/ece3.5395
description: Human-induced changes in climate and environment are challenging the existence of migratory species. Species with diverse and flexible migratory behaviour suffer less from population decline, as they are more capable to respond by altering migratory behaviour. At the individual-level, variations in migratory behaviour may lead to differences in fitness and subsequently influence demographic dynamics. Using lifetime GPS bio-logging data from 169 white storks (Ciconia ciconia), we answer whether their recently shortened migration has survival benefit during the juvenile stage, the riskiest life period for many migrants. We also explore how other variations in migratory decisions (i.e. time, destination), movement activity (measured by the overall body dynamic acceleration), and early life conditions influence juveniles’ survival. We observed that first autumn migration was the riskiest period for juvenile white storks. Individuals that migrated shorter distances and fledged earlier experienced lower mortality risk. In addition, higher movement activity and overwintering “closer-to-home” in Europe and North Africa (84.21% of tracked individuals adopted this new strategy) were associated with higher survival. Our study shows how avian migrants can change life history decisions linked to fitness over few decades and thus helps us to understand and predict how migrants respond to the changing world.
DOI: 10.5441/001/1.71r7pp6q/3
title: LifeTrack White Stork Vorarlberg_2016-2019-reference-data

description: Cheng Y, Fiedler W, Wikelski M, Flack A (2019) "Closer-to-home" strategy benefits juvenile survival in a long-distance migratory bird. Ecology and Evolution. doi:10.1002/ece3.5395
description: Human-induced changes in climate and environment are challenging the existence of migratory species. Species with diverse and flexible migratory behaviour suffer less from population decline, as they are more capable to respond by altering migratory behaviour. At the individual-level, variations in migratory behaviour may lead to differences in fitness and subsequently influence demographic dynamics. Using lifetime GPS bio-logging data from 169 white storks (Ciconia ciconia), we answer whether their recently shortened migration has survival benefit during the juvenile stage, the riskiest life period for many migrants. We also explore how other variations in migratory decisions (i.e. time, destination), movement activity (measured by the overall body dynamic acceleration), and early life conditions influence juveniles’ survival. We observed that first autumn migration was the riskiest period for juvenile white storks. Individuals that migrated shorter distances and fledged earlier experienced lower mortality risk. In addition, higher movement activity and overwintering “closer-to-home” in Europe and North Africa (84.21% of tracked individuals adopted this new strategy) were associated with higher survival. Our study shows how avian migrants can change life history decisions linked to fitness over few decades and thus helps us to understand and predict how migrants respond to the changing world.
DOI: 10.17632/8s8nm4wxyd.1
title: Data for: Geochemistry and clay mineralogy of Early Cretaceous mudstones of the Algarve Basin (SW Iberia) and palaeoclimate implications

description: Geochemical and clay mineral dataset with location of samples.
DOI: 10.17632/h599kxj9vc.1
title: Data for: Impact of High-speed Rail on Population Mobility and Urbanisation: A case study on Yangtze River Delta Urban Agglomeration, China

description: This is the data used in the paper 'Impact of High-speed Rail on Population Mobility and Urbanisation: A case study on Yangtze River Delta Urban Agglomeration, China'. The file includes data of population, urbanization, economic development, and high-speed rail constration of the 26 cities of Yangtze River Delta urban agglomeration in China from 2005 to 2016. The data of high-speed rail are from the China Railway Yearbook from 2006 to 2017, and the data for high-speed rail service frequency are from the National Railway Timetable released by the Ministry of Railways of the People's Republic of China over 2005–2016. Other data are collected from the China City Statistical Yearbook, and provincial and urban statistical yearbooks. The third table in the file shows the calculation methods of the processed data.
DOI: 10.17632/nvgpdyjgcg.1
title: Data for: Removal of Dabigatran Using Sorbent Hemadsorption

description: aPTT values at baseline, after dabigatran administration and after dabigatran removal
DOI: 10.17632/td4z65v6v6.1
title: Data for: Field Evaluation of the Impact of Environmental Conditions on Concrete Moisture-Related Shrinkage and Coefficient of Thermal Expansion

description: Field Evaluation of the Impact of Environmental Conditions on Concrete Moisture-Related Shrinkage and Coefficient of Thermal Expansion
DOI: 10.17632/w3vdg25mcg.1
title: Data for: EFFECT OF CORE DENSITY ON THE LOW-VELOCITY IMPACT RESPONSE OF FOAM-BASED SANDWICH COMPOSITES

description: Force-displacement data from low-velocity impacts
DOI: 10.17632/x28x5xwh3p.1
title: Data for: Earthquake dynamics identification of a masonry façade-A convolution-least squares method approach

description: Data registered by the accelerometers istalled in the Santa Maria di Collemaggio basilica during the low intensity earthquake, dating back to 10 April 2018
DOI: 10.17632/x28x5xwh3p.2
title: Data for: Earthquake dynamics identification of a masonry façade-A convolution-least squares method approach

description: Data registered by the accelerometers istalled in the Santa Maria di Collemaggio basilica during the low intensity earthquake, dating back to 10 April 2018
DOI: 10.17632/x2czvtync4.1
title: Data for: Application of 13 loci STR multiplex for cannabis sativa genotyping

description: Table a. STRs multiplex primers features
DOI: 10.5061/dryad.5df18fp/1
title: Hamilton_et_al_README

description: README file containing list of files and scripts contained in this dryad package.
DOI: 10.5061/dryad.5df18fp/16
title: Hamilton_et_al_Supplementary_Figure_4

description: Supplementary Figure 4 from Hamilton et al. (2019); shows the most common diversification rate shifts.
DOI: 10.5061/dryad.5df18fp/2
title: Hamilton_et_al_Supplementary_Figure_1

description: Supplementary Figure 1 from Hamilton et al. (2019); shows the Maximum likelihood tree of Bombycoidea, based on 650 AHE loci.
DOI: 10.5061/dryad.5df18fp/3
title: Hamilton_et_al_Supplementary_Figure_2

description: Supplementary Figure 2 from Hamilton et al. (2019); shows the interfamilial relationships of the ‘CAPOPEM’ group.
DOI: 10.5061/dryad.5df18fp/4
title: Hamilton_et_al_Supplementary_Figure_3

description: Supplementary Figure 3 from Hamilton et al. (2019); shows the interfamilial relationships of the Saturniidae.
DOI: 10.5061/dryad.5df18fp/5
title: Hamilton_et_al_Supplementary_File_1

description: Set of commands to run the Breinholt et al. 2017 Anchored Hybrid Enrichment bioinformatics pipeline.
DOI: 10.5061/dryad.5df18fp/6
title: Hamilton_et_al_Supplementary_File_2

description: Specification file for the BOM1 probe set used to order probes from Agilent Technologies (http://www.agilent.com/).
DOI: 10.5061/dryad.5df18fp/8
title: Hamilton_et_al_Supplementary_File_4

description: Compressed directory of reference files or databases used in the pipeline.
DOI: 10.5061/dryad.5n36kb5/1
title: Mammals-dung beetle co-decline data

description: This file contains the data summary, data of dung beetles assemblages and mammalian assemblages embodied into different radial cluster size across the Atlantic Forest of South America.
DOI: 10.5061/dryad.6836p06/1
title: Data of pollen collected by four insect species

description: The file includes data regarding pollen samples collected by four insect species: Bombus terrestris (BT), Osmia bicornis (OB), Chrysoperla carnea (CC) and Harmonia axyridis (HA). Samples were collected from April to early July in 23 agricultural landscapes in Germany and Switzerland.
DOI: 10.5061/dryad.8h07878/1
title: Broodmate aggression in accipitrid raptors data: including behavioural, life-history and ecological predictors

description: The archive file contains the raw data file (Broodmate_aggression_raptors_database.txt), sources and references (Readme_Database_Sources_and_references.docx), variable description (Readme_Database_Variable_description.txt) and additional tables for the main article (CIC table for candidate model set (Path Analysis).docx, AIC table for candidate model set (life history plus ecological predictors).docx).
DOI: 10.5061/dryad.99sq846/1
title: LiDAR and RGB canopy cover relationship with biomass in hairy vetch

description: LiDAR and RGB canopy cover estimates were evaluated for predictive ability of hairy vetch dry matter biomass in spaced or sward plot breeding nurseries. All necessary files are within the ZIP file. See the README file for greater detail. R scripts and html data analysis output are provided.
DOI: 10.5061/dryad.cq91j7v/1
title: Dryad_phenotype_genotype_data

description: See readme file
DOI: 10.5061/dryad.cq91j7v/3
title: Nuclear SMC sequence reads in fasta format

description: See readme file
DOI: 10.5061/dryad.cq91j7v/4
title: Nuclear UBE2H sequence reads in fasta format
DOI: 10.5061/dryad.f5d2070/10
title: Survival_Young_ESM

description: Data for the test of selective disappearance
DOI: 10.5061/dryad.f5d2070/2
title: Pheno_data_AGE_ESM

description: Phenotypic data used for quantitative genetic analyses of exploratoy behavior (LOCOM) in great tits.TESTAGE = age (in months) at which individuals are tested. June days= date (in june days) on which individuals are tested
DOI: 10.5061/dryad.f5d2070/3
title: Script_Character_State_ESM

description: Script for the character state approach (bivariate animal model)
DOI: 10.5061/dryad.f5d2070/4
title: Script_Random_Regression_ESM

description: Script for the random regression animal model approach
DOI: 10.5061/dryad.f5d2070/5
title: Script_Figure1_ESM

description: Script for producing Figure 1
DOI: 10.5061/dryad.f5d2070/6
title: pin_RR

description: Script of the pin_RR function to derive age-specific quantitative genetic estimates from random regression models (asreml)
DOI: 10.5061/dryad.f5d2070/7
title: Script_Simulations_ESM

description: Script for simulations (no GxA) and analysis of simulated data (RRAM)
DOI: 10.5061/dryad.f5d2070/8
title: Results_Sim_No_GXA

description: Results of the simulation
DOI: 10.5061/dryad.f5d2070/9
title: Script_Survival_Young_ESM

description: Script for the test of selective disappearance
DOI: 10.5061/dryad.fg1r11d/1
title: Vegetation structure data

description: This zip file contains the LIDAR vegetation structure data in raster format (.img).
DOI: 10.5061/dryad.gv0420c/1
title: Metadata and associated R code

description: This file uses parameter estimates calculated in a separate R script (not provided in our supplement) and builds three integral projection models (one at each level of deer impact). Using the component matrices of the discretized kernel matrix K=P+F+C, this script also projects even-aged cohorts of either newborn seedlings or clones using matrix P as an individual-based model. This document displays the R code we used to generate all demographic estimates reported in our article and also most of the figures. The required demographic parameters are listed in two comma-separated value files (.csv) that are included in with this supplement. Additionally, we included the output from the individual-based model projections to expedite computation. They are saved as R objects in R data files (.Rdata).
DOI: 10.5061/dryad.gv0420c/2
title: The vital rate coefficients

description: Vital rate coefficients csv file that is loaded in section 1 of the HTML file.
DOI: 10.5061/dryad.gv0420c/3
title: The reproductive coefficients

description: The reproductive coefficients csv file that is loaded in section 1 of the HTML file.
DOI: 10.5061/dryad.gv0420c/4
title: R data of individual-based model projections for sexually produced offspring

description: Section IV of the metadata HTML file.
DOI: 10.5061/dryad.gv0420c/5
title: R data of individual-based model projections for asexually produced offspring

description: See section IV of the HTML file.
DOI: 10.5061/dryad.mq385f0/2
title: Gee & Reisz_data matrix

description: NEXUS file for this study. Derived from matrix of Schoch (2019; Journal of Paleontology) with added codings for Nanobamus macrorhinus.
DOI: 10.5061/dryad.p2gm5q8/1
title: R script for publication

description: R codes used to develop model simulation
DOI: 10.17632/46bkbysggd.1
title: Data for: Birth and demise of the Bangong-Nujiang Tethyan Ocean: A review from the Gerze area of central Tibet

description: Detrital zircon U-Pb isotopic analyses of the Duoni and Jingzhushan formations on the northern Lhasa margin
DOI: 10.17632/9dyr8xc3ph.1
title: Data for: Diazepam Inhibited Lipopolysaccharide (LPS)-induced pyroptotic cell death and alleviated pulmonary fibrosis in mice by specifically activating GABAA receptor α4-subunit
DOI: 10.17632/b6zxz74j9j.1
title: Data for: The state of social science research on antimicrobial resistance

description: This file contains raw and processed replication data, as well as source code for analysis, for the paper. Data.txt contains the raw citations data extracted from Web of Science. Cosine.csv contains the cosine similarity matrix based on bibliometric coupling. The cosine measurements are obtained by using Loet Leydesdorff's BibJourn.exe application on data.txt. See AMR Fig 2 for more details. Cr.csv contains the number of citations for the top outlets. Fig1.csv contains data comparing the number of citations in AMR and other global health emergencies. AMR Fig1.R contains the source code for Figure 1. AMR Fig2.R contains the source code for Figure 2.
DOI: 10.17632/h2nxrghrfw.1
title: Data for: Benefits of noise in M-estimators: Optimal noise level and probability density

description: This zipped file contains the program of solving the inequality constrained optimization problem of Eq.(A.6) by the interior point function methods (Matlab code).
DOI: 10.17632/nmwwj6ttk6.1
title: Data for: Removal of Dabigatran Using Sorbent Hemadsorption

description: dabigatran removal results
DOI: 10.5061/dryad.28pj314/2
title: Models and Results from PLOS ONE Sohn Smith Ting

description: This repository contains the MATLAB code and data files necessary to recreate all results and figures in Sohn, Smith, Ting, "Effects of kinematic complexity and number of muscles on musculoskeletal model robustness to muscle dysfunction."
DOI: 10.5061/dryad.2f1vk3p/1
title: seed trap data

description: This file includes the number of seeds in the traps for 10 species. XY coordinates (shown in meter) of the traps are also included.
DOI: 10.5061/dryad.2f1vk3p/2
title: location of seed source trees

description: This file includes the XY coordinates (shown in meter) of the trees which produced seeds in and around the 6 ha plot for 10 species.
DOI: 10.5061/dryad.5df18fp/10
title: Hamilton_et_al_Supplementary_File_6

description: Compressed directory of all FASTA sequence files (Pr+Fl, AA, and all individual AHE loci), all partition files, and all consensus trees from each AHE locus/tree used in ASTRAL analysis.
DOI: 10.5061/dryad.5df18fp/11
title: Hamilton_et_al_Supplementary_Table_1

description: Supplementary Table 1 from Hamilton et al. (2019); describes the loci names in the BOM1 probe set.
DOI: 10.5061/dryad.5df18fp/12
title: Hamilton_et_al_Supplementary_Table_2

description: Supplementary Table 2 from Hamilton et al. (2019); lists the taxa included in the phylogenetic analyses.
DOI: 10.5061/dryad.5df18fp/13
title: Hamilton_et_al_Supplementary_Tree_1

description: Supplementary Tree 1 from Hamilton et al. (2019); the Pr+Fl phylogeny.
DOI: 10.5061/dryad.5df18fp/14
title: Hamilton_et_al_Supplementary_Tree_2

description: Supplementary Tree 2 from Hamilton et al. (2019); the AA phylogeny.
DOI: 10.5061/dryad.5df18fp/15
title: Hamilton_et_al_Supplementary_Tree_3

description: Supplementary Tree 3 from Hamilton et al. (2019); the ASTRAL phylogeny.
DOI: 10.5061/dryad.5df18fp/7
title: Hamilton_et_al_Supplementary_File_3

description: Compressed directory of SLURM rungen scripts, referenced in the pipeline instructions.
DOI: 10.5061/dryad.5df18fp/9
title: Hamilton_et_al_Supplementary_File_5

description: Compressed directory of new scripts used in the pipeline, not previously in Breinholt et al., (2018).
DOI: 10.5061/dryad.72s8g4j.1
title: Data from: Adaptive phenotypic plasticity for life-history and less fitness-related traits
DOI: 10.5061/dryad.72s8g4j.1/1.1
title: Meta-analysis from articles reporting phenotypic plasticity between 1987 and 2011

description: Data clean and ordered including all the selected articles. We conducted a meta-analysis on studies reporting reaction norms in different trait types across environments and species. We performed this meta-analysis investigating 24 years of research literature on phenotypic plasticity. We selected papers employing the keywords “life history & morphology & plasticity” between 1991-2006 from all databases in Web of Knowledge (WoK-ISI) and between 2007-2011 from Web of Science (ISI). We set out with 583 papers in total, including a few studies known to us that met the criteria published between 1987 and 2011. From this initial set, we extracted data from 213 studies reporting reaction norms. Data extraction from each paper included information from all tables, text, and figures using the software Image J. Quantification of the reaction norms was achieved through the computation of the CV of the trait expression across environments. We computed 5,885 coefficients of variation including 211 species exposed to at least two and at most 11 environment levels reporting phenotypic plasticity.
DOI: 10.5061/dryad.72s8g4j.2
title: Data from: Adaptive phenotypic plasticity for life-history and less fitness-related traits
DOI: 10.5061/dryad.72s8g4j.2/1.2
title: Meta-analysis from articles reporting phenotypic plasticity between 1987 and 2011

description: We compared the phenotypic plasticity of life-history and non-life history traits in a meta-analysis that investigated 24 years of research. We first examined 583 papers that responded to the keywords “life history & morphology & plasticity” between 1991-2006 from all databases in Web of Knowledge (WoK-ISI) and between 2007-2011 from Web of Science (ISI), as well as a few studies known to us that met the criteria published between 1987 and 2011. From these, we selected the 213 studies that reported reaction norms in different trait types across environments and species. Data extraction from each paper included information from all tables, text, and figures using the software Image J. Quantification of the reaction norms was achieved through the computation of the CV of the trait expression across environments. We computed 5,885 coefficients of variation including 211 species exposed to at least two and at most 11 different environments. The readme file from this same project will help you understand the information that was collected. The data is associated with the paper: Acasuso-Rivero, C., Murren, C. J., Schlichting, C. D., & Steiner, U. K. (2019). Adaptive phenotypic plasticity for life-history and less fitness-related traits. *Proceedings of the Royal Society B: Biological Sciences*, *286*(1904), 20190653. https://doi.org/10.1098/rspb.2019.0653
DOI: 10.5061/dryad.cs59t13/1
title: EPA-ng results for concatenation

description: The EPA-ng output files for concatenation tree and concatenated alignments
DOI: 10.5061/dryad.cs59t13/2
title: True Species Trees

description: The true species trees for all model conditions simulated using SimPhy
DOI: 10.5061/dryad.cs59t13/3
title: Estimated gene trees

description: Estimated gene trees for the three model conditions with speciation rate of 0.000001. There are three folders corresponding to the three ILS level and in each folder there are 50 replicates each containing 1000 gene trees in newick format.
DOI: 10.5061/dryad.f5d2070/11
title: Pedigree_SEX_ESM

description: pedigree used for sex-specific quantitative genetic analyses
DOI: 10.5061/dryad.f5d2070/12
title: Pheno_data_SEX_ESM

description: phenotypic data used for sex-specific quantitative genetic analyses
DOI: 10.5061/dryad.f5d2070/13
title: Script_Test_Sexes_ESM

description: Script used for sex-specific quantitative genetic analyses
DOI: 10.5061/dryad.gc46fq8/1
title: Dataset analyzed for Kong & Fridley 2019

description: The excel file includes carbon budget data from published studies of individual plant metabolism. Metadata is included in the second tab.
DOI: 10.5061/dryad.k52h33d/1
title: Supplementary Appendix e-1: Extended Materials and Methods
DOI: 10.5061/dryad.k52h33d/2
title: Supplementary Appendix e-2: Mass spectrometry counts for all proteins across all samples

description: Data file contains summary of mass spectrometry results by patient, aggregated by protein (UniProt ID and Gene name given), with number of unique peptides, peptide count, percent coverage, best discovery score, and best expectation value. For patient ID key, see main manuscript Table 1. (PACNS = ID 1-8, RCVS = ID 9-12, NIC = ID 13-23)
DOI: 10.5061/dryad.k52h33d/3
title: Supplementary Appendix e-3: Statistically significant differentially expressed proteins in PACNS CSF compared to NIC CSF

description: Data file contains results of of tests for differential expression of all observed proteins by t-test, and by DESeq. See methods for further detail. UniProt ID, adjusted p value for each test, and log2(fold change) are provided, for comparing PACNS (n=8) to NIC (n=11).
DOI: 10.5061/dryad.k52h33d/4
title: Supplemental Figure e-1: Orthogonal validation of elevated C5, IgM, IgA in CSF of PACNS patients using Western Blotting
DOI: 10.5061/dryad.k52h33d/5
title: Supplemental Figure e-2: Orthogonal validation of elevated C5 by commercial ELISA
DOI: 10.5061/dryad.th70gn0/1
title: echidna data

description: Immergence and emergence dates, masses and reproductive activity and Observation history
DOI: 10.17632/4jk9skjy3k.1
title: Data for: Fracture-Induced Pore Fluid Pressure Weakening and Dehydration of Serpentinite

description: These files contain the mechanical data for the experiments reported in this manuscript.
DOI: 10.17632/6d5bd2mt3z.1
title: Data for: Influencing the properties of LigninPU films by changing copolyol chain length, lignin content and NCO/OH mol ratio
DOI: 10.17632/c2t3j2nn2w.1
title: Data for: Osmium-isotope evidence for volcanism across the Wuchiapingian-Changhsingian boundary interval

description: This dataset contains osmium isotope data for four Wuchiapingian-Changhsingian (Late Permian) sections (Lianyuan, Meishan, Shangsi-South China and Buchanan Lake-Canada) and carbon isotope data for Lianyuan section.
DOI: 10.17632/rr26hmgtk9.2
title: Data for: Evaluating active investing with generic trading reactions

description: The data set includes the complete input data and results for two papers: "What drives trend-following profits?" and "Evaluating active investing". There is also a file with detailed instructions of how to use the data (i.e., Instructions.doc).
DOI: 10.17632/tpwdyyjtmj.1
title: Data for: Evaluating Integrated Coastal Zone Management Efforts in Penang Malaysia

description: The performance scoring is articulated around six principles of sustainability as called by Gallagher (2010) Coastal Sustainability Standard’(CoSS). The principles are Planning, Participation, Communication, Integration, Responsibility, and Balance,
DOI: 10.17632/v586dhdjbf.1
title: Data for: Spatial variability of arsenic in Indo-Gangetic basin of Varanasi and its cancer risk assessment