cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/nohrhj
title: Spatial variability of rainfall driven erosion at the catchment scale: the June 23rd 2010 rainfall event on the Galabre catchment

description: This dataset is related to the Galabre basin, a 20 km² headwater catchment located in the French Alps that is part of the Draix-Bléone Observatory. Liquid and solid discharges are continuously monitored at the catchment outlet (Legout et al. 2021). Soil erosion was modelled for a rainfall event recorded on June 23rd 2010, prescribing the effective rainfall intensity in two different ways: 1) as spatially distributed rainfall fields defined from raster files with spatial and temporal resolutions of 1 km and 15 minutes respectively, and 2) as spatially uniform rainfall fields defined as the spatial average of the rainfall fields over the entire catchment, with a time resolution of 15 minutes. Both rainfall products are equivalent in terms of the spatial average of rainfall intensity at each time step. The only difference between both simulations was the spatial variability of rainfall. The dataset contains two Iber+ models with either options of modelling rainfall, including the rainfall data as .asc rasters, as well as a spreadsheets with the output results of the simulation. The Iber+ model should be run with the executables provided by CEA & GARCIA-FEAL 2023, "Iber+ executables (V3.2b)", https://doi.org/10.57745/UFEK4L.
DOI: 10.57745/oqnit1
title: Température de l'air de placettes expérimentales (Gradient altitudinal) du Mont Ventoux (2007 / 2022)

description: Données horaires de la température de l'air mesurées sur différentes placettes expérimentales des versants nord et sud du Mont Ventoux Ces placettes sont étudiées et suivies par l'UR 0629 Écologie des de Forêts Méditerranéennes de l'INRAe COUVERTURE TEMPORELLE : Versant Nord : 12/04/2007 - 22/12/2022 Versant Sud : 06/04/2007 - 22/01/2020 IDENTIFIANT PLACETTES : ALTITUDE (m) / LATITUDE (°) / LONGITUDE (°) Versant Nord : N1 : 978 44.185461 5.233783 N2 : 1110 44.184139 5.23745 N3 : 1260 44.1799 5.241541 N4 : 1395 44.178181 5.243877 N5 : 1521 44.175612 5.244015 Versant Sud : S1 : 901 44.11444 5.281667 S3 : 1128 44.12222 5.323333 S5 : 1545 44.155 5.333056 FICHIER DE DONNÉES Nom : VENTOUX_id_TA_L2B.csv id : identifiant de la placette format : csv (séparateur ";") L2B : niveau de traitement des données (données filtrées des erreurs de mesure et reconstruites (gapfilling) code données manquantes = -9999 En l'absence de données mesurées (principalement liés à des pannes des enregistreurs), la valeur de température de l'air est estimée à partir de la température de l'air mesurée sur les autres placettes du même versant (si disponible) et en établissant des régressions linéaires entre les températures des différentes placettes. L'estimation retenue est celle pour laquelle la meilleure corrélation a été observée. LISTE VARIABLES TIMESTAMP : horodatage en heure TU au format dd/mm/yyyy HH:MM TA : température instantanée de l'air en °C FLAG : données mesurées (valeur à 0) ou simulées (valeur à 1) MATÉRIELS DE MESURE Enregistreur HOBO Pro V2 de Température / Humidité relative de marque Onset modèle U23-001A https://www.onsetcomp.com/products/data-loggers/u23-001 Abri à ventilation naturelle de marque Onset modèle RS1 https://www.onsetcomp.com/products/mounting/rs1
DOI: 10.57745/oxghdo
title: Xenorhabdus kozodoii FR71 epigenetic data

description: DNA methylation was determined using the ds_modification_motif_analysis protocol within SMRT Link 5.1.0 which uses an in silico kinetic reference and a Welch’s t-test based kinetic score detection of modified base positions with parameters set as follow: subread/polymerase read length &gt;= 500, polymerase read quality &gt;= 80 and modification QV &gt;= 30. A score of 30 for the “Modification QV” is the default threshold for calling a position as modified, and corresponds to a p-value of 0.001.
DOI: 10.57745/p76nnm
title: RPG complété 2020 Région Franche-Comté

description: RPG complété 2020. Complète le RPG campagne 2020 pour les départements de la région Franche-Comté (25, 39, 70, 90). (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2022.
DOI: 10.57745/pvprz9
title: Raw data associated to the article: A nanoluciferase-encoded bacteriophage illuminates viral infection dynamics of Pseudomonas aeruginosa cells

description: The data represents the biological assessment of a genetically modified bacteriophage that encodes for the nanoluciferase enzyme that is produced upon the infection of four strains of Pseudomonas aeruginosa. Growth curves were recorded over time by adsorbance and emitted bioluminescence. Adsorption assays and one step growth curves were generated. Fluorescent microscope was used to detect bioluminescent signals and to vizualized single-cell infected by bacteriophages.
DOI: 10.57745/qnwoop
title: Deliverable D3.2 Assessment Indicators - Demonstrated VC - CS-Aut

description: This file is part of the deliverable D3.2 of the European H2020 FAIRCHAIN. It structures all the data relevant for the description of the demonstrated value chain of the case study in Austria (CS-Aus). The description of the baseline covers the dimensions of co-creation business models and sustainability including environmental, economic and social perspectives.
DOI: 10.57745/naht7k
title: Flow intermittence indicators from the reconstruction simulations (1960-2021) in the Albarine DRN (France)

description: Statistical monthly and yearly flow intermittence indicators calculated from the simulated daily state of flow in the Albarine DRN (France). Indicators for the reconstruction period (1960-2021).
DOI: 10.57745/p6lin2
title: R script for the normalisation of fluorescence profils having two local maxima

description: R script
DOI: 10.57745/pacert
title: Replication data for "Effects of pathogen reproduction system on the evolutionary and epidemiological control provided by deployment strategies for two major resistance genes in agricultural landscapes"

description: R code for reproducing the analysis, results and figures presented in the article Zaffaroni M., Rimbaud L., Rey J-F., Papaïx J. & Fabre F. 2024. Effects of pathogen reproduction system on the evolutionary and epidemiological control provided by deployment strategies for two major resistance genes in agricultural landscapes. Evolutionary Applications, in press, 10.1111/eva.13627
DOI: 10.57745/ppn0qw
title: Practice Abstract - How to measure tree root growth in a forest

description: Practice Abstract describing how to install a rhizotron
DOI: 10.57745/rahska
title: CosMoPoly tangible chemical space

description: This deposit contains the tangible chemical space of the project COSMOPOLY (ANR APG 2022). This chemical library enumerates biobased polyfunctional molecules (dedicated to cosmetics) obtained from a building-blocks library available from agro-industries, biorefineries and chemical companies. This library contains carbohydrates, fatty acids, organic acids, alcohols, polyols, phenolic acids, … presumably accessible at industrial scales. The "cosmopoly_library.csv" file contains systematically enumerated molecular structures forming the CosMoPoly library. Each row in the file represents a single molecule, with data organised into four comma-separated columns. The structure of the file is outlined below: File Structure: First Column ("Product") This column contains the molecular structure represented in SMILES notation. Second ("bb1") and Third ("bb2") Columns These columns contain the names of the building blocks used to generate the compound listed in the first column ("Product"). Fourth Column ("bb3") If the molecule was generated via acetalization followed by esterification, this column contains the name of the third building block (bb3). If the molecule was generated using only two building blocks, this column states "None". Additional Information: The last 49 rows of the file contain the SMILES representations of the building blocks themselves. The second column ("bb1") in these rows lists their corresponding names. When a building block is ambiguous, because of its undefined stereochemistry, it is described as a list of the matching chemical names seperated by semi-columns This document is used to illustrate the manuscript: "Spherical GTM: a new proposition for visualisation of chemical data" to be considered for publication in Molecular Informatics.
DOI: 10.57745/skhtl7
title: Agricultural Product Supply Risk

description: Agricultural product Supply Risk index and data sources used to compute them. The Agricultural product Supply Risk are based on the criticality methods of the Joint Research Centre of the European Commission and the Dietary Sourcing Flexibility Index from the FAO. The index allows to quantify and compare the accessibility of agricultural products between countries and products.
DOI: 10.57745/p6jxs2
title: Relative abundances of gut microbiota genera in 60 day old piglets

description: The file contains the relative abundances of gut microbiota genera, diversity indexes (shannon and richness), and enterotype classification (PM and RT) for 60 day old Large White piglets.
DOI: 10.57745/pelmzj
title: Adaptive function of duodichogamy: Why do chestnut trees have two pollen emission peaks?

description: In cosexual plants, the advantages and drawbacks of mating facilitation between sexes remain poorly understood. To cast some light on this topic, we focused on duodichogamy, a rare flowering system designating plants that consecutively produce three batches of flowers in the sequence male-female-male. We explore the adaptive advantages of this flowering strategy using chestnuts (Castanea spp.), the first duodichogamous species described, as models. These mass-flowering insect-pollinated trees have two types of male catkins, one type producing most pollen, and another type, closely associated with the rewardless female flowers, producing much smaller amounts of pollen. We surveyed insect visits on 11 chestnut trees during the entire flowering period. More insects visited trees during the first major staminate phase. However, there were more visits to female flowers during the second minor staminate phase, suggesting that the attractiveness of male catkins triggers visits to nearby female flowers when trees have already released most of their pollen. This should limit self-pollination and its negative consequences on fruit set. We found 22 animal-pollinated duodichogamous species described in the literature. All of them are also mass-flowering woody plants. In 21 out of 22 cases, gynoecia (female flower parts) are associated with androecia (male flower parts), whereas androecia are often not associated with gynoecia. Moreover, the association generally involves the androecia responsible for the second minor staminate phase, as observed in chestnuts. This supports the hypothesis that duodichogamy was selected to facilitate pollen deposition on stigmas by pollinators while limiting self-pollination, not just to increase pollen emission.
DOI: 10.57745/pi9esn
title: Coupes rases - méthode de détection "bi-date" à partir d'imagerie satellitaire

description: Guide GEOSUD qui décrit la méthode de détection des coupes rases à partir d'images satellitaires optiques acquises, sur une même zone, à deux dates espacées d'une année au moins.
DOI: 10.57745/rabfsq
title: Analyse NGS d'oligonucléotides sélectionnés contre CspZ (SELEX)

description: Le diagnostic de la borréliose de Lyme, principalement causée par Borrelia burgdorferi sensu stricto, est soumis à controverse. Les méthodes diagnostiques actuelles reposent largement sur la détection indirecte d'anticorps sériques, et souffrent de l'absence d'une approche définitive pour l'identification directe du pathogène. Cette étude se concentre sur l'application du SELEX (12 tours de sélection) ciblant spécifiquement la protéine de surface CspZ. Nous fournissons des données de séquençage NGS pour chaque cycle de sélection.
DOI: 10.57745/sr0spr
title: Companion Modeling in the Laboratory

description: Data set resulting in the ExpeComMod experimental economics experiment performed in the Laboratory of Experimental Economics of Montpellier (LEEM) between June and November 2018. The experimental protocol and justification is presented in (Bonté et al. 2019). The analysis of the results is presented in another paper following a publication process.
DOI: 10.57745/nkq2zy
title: micro-CT analysis of grafts of grapevine

description: We recommend using Fiji/imageJ software to open the three micro-computed tomography TIFF stacks, which are of a natural root graft and a man-made stem graft before (T0) and 24h after (T24) iohexol labelling. Stacks were acquired on an EasyTom 150 (RX solutions). The natural root and man-made stem grafts were imaged with a spatial resolution of 14.1621 and 29.2186 µm/voxel respectively. The scanned area was approximately 2 and 4 cm in length for the root and man-made stem graft respectively. Scans were done by rotating the sample 360° at &lt; 0.26° rotation steps. Each scan took around 5 min. The X-ray source was set at 60 kV and 301 μA. The distance between the X-ray source and the detector (sdd) was 475 mm for the root and 379 mm for the stem graft. The distance between the source and the object (sod) was 53 mm for root and 87 mm for stem graft. For the stem graft, we first made a control acquisition without iohexol for each plant (called T0). Then, we cut the roots underwater and immersed the roots in an iohexol solution at 60 mg/mL for 24 h. The grafts were then placed in a growth chamber so that the transpiration stream could label functional xylem vessels that cross the graft interface. A second acquisition was done after 24 h (called T24). The 3D reconstructions of the stacks are available in XML format: unireconstruction omega_root for the natural root graft, and unireconstruction omega_graft_t0 and unireconstruction omega_graft_t24 for the stem graft before and after labelling with iohexol. Funding: This work was funded with the project EFA 324/19 - VITES QUALITAS, 65 % co-funded by the European Regional Development Fund (FEDER) through the Interreg Program V-A Spain-France-Andorra (POCTEFA 2014-2020) and VitiGraft funded by the Plant2Pro® Carnot Institute in the frame of its 2021 call, Plant2Pro® is supported by ANR (agreement #21-CARN-024-01 – 2021). The authors want to thank all their colleagues for their assistance. Special thanks to Javier Eraso and Rafael García from Vitis Navarra nursery. Micro-CT acquisitions were performed in Montpellier, France, at the MRI platform member of the national infrastructure France-BioImaging and supported by the French National Research Agency (ANR-10-INBS-04, « Investments for the Future »), and of the Labex CEMEB (ANR-10-LABX-0004) and NUMEV (ANR-10-LABX-0020).
DOI: 10.57745/oriivr
title: Survey data on beachgoers' perception of coastal bathing risks in South-West France

description: The dataset provides data on beachgoers' behaviours, attitudes and perceptions of coastal bathing risks at La Lette-Blanche beach (France). Data were collected from a face-to-face quantitative survey conducted during the lifeguard-patrolled summer period (July-August) 2022 from a sample of 722 visitors. The survey was conducted in French or English and consisted of 40 questions covering four main topics: (1) attitudes toward risk in general and concerns about risks in everyday life, including leisure and water based recreation context; (2) risk experience (participation in beach activities in general, visits at southwest France beaches, recreational activities, previous accidents); (3) visits to La Lette-Blanche beach at the time of the survey (attractiveness, bathing behaviour and perception of risks); (4) sources of information and preventive behaviours related to bathing risks. Individual socio-demographic characteristics were collected at the beginning of the survey. Individual informations are completed with environmental data (collected by a nearby directional wave buoy, tide gauge and weather station). Additionnaly, an hourly estimate of rip current hazard, shore break wave hazard and of the total beach crowd during the patrolling hours was provided by the chief lifeguard of the study beach. The dataset contains 133 variables and 722 observations.
DOI: 10.57745/pk5h5w
title: Plan de gestion de données (PGD) de l'IEPL - Data management plan (DMP) experimental facility for milk production

description: Le plan de gestion de données de l'unité est un document cadre décrivant le cycle de vie des données produites ou utilisées dans le collectif. Le PGD de l'IEPL se décline en 2 grands produits de recherche : - les données intégrées dans un Systèmes d’Informations et Calcul pour le Phénotypage Animal (SICPA) : SICPA Bovins, SICPA Ovins-caprins, SICPA Sanitaire et Alimentation Les 2 premiers étant des SICPA espèces et le dernier un SICPA multi-espèce. - les données qui n'intègrent pas de SICPA et dont la gestion relève de système mis en place à l'IEPL. Ce plan de gestion de données pourra servir de référence pour l'élaboration de plan de gestion de données de projet.
DOI: 10.57745/qvznws
title: The Multichannel Double Pass Spectrograph (MSDP), an imaging spectroscopy technique for solar physics

description: We present a set of documents about the Multichannel Subtractive Double Pass technique, i.e. a technique of 2D imaging spectroscopy applied to solar physics (photospheric and chromospheric observations), that was developed since 1977 by Pierre Mein at Meudon. The set contains the history of the devices integrated to the spectrographs of many observatories, a bibliography of scientific papers based on MSDP data, the methods used for data processing and future extensions or projects.
DOI: 10.57745/re6cdn
title: Points et supports de simulation des projections hydrologiques

description: Ce rapport décrit les supports de restitution des modèles impliqués dans le projet Explore2 : il s’agit des points des réseaux de référence établis pour l’évaluation des modèles appliqués dans le projet (Sauquet et al., 2022), de points positionnés le long du réseau hydrographique ou sur une grille définie par des modèles hydrogéologiques, et d’entités géographiques, i.e. des masses d’eau souterraine issues d’un découpage de l'ensemble du territoire national en unités hydrogéologiques homogènes. Ces supports de restitution ont été conçus pour répondre aux besoins d’une densité de sorties des modèles plus élevée que celle du précédent exercice Explore2070. Les points le long du réseau hydrographique ont été choisis pour répondre à des questionnements opérationnels ou des possibles utilisations futures (i.e. le devenir du régime au droit des points de gestion inscrits dans les SDAGEs ou des points actuels de suivi de la qualité des eaux). Les simulations de piézométrie seront fournies sur un ensemble de piézomètres identifiés dans les bases de données nationales et sur les points d’une grille régulière superposée au maillage préexistant des modèles hydrologiques. Le nombre de points de grille et d’entités a été limité dans un but de gestion raisonnée des bases de données et du futur portail DRIAS-Eau qui hébergera les projections hydrologiques.
DOI: 10.57745/s06rsh
title: Dataset of a study about the impact of a micro-sewage effluent on the benthic macroinvertebrate community in a small Apennine creek (NW Italy)

description: This dataset was produced during a study investigating the impact of a small sewage source on the aquatic environment of the Caramagna Creek (NW Italy). At the study site, the creek receives an effluent sewer from a small cluster of houses. Macroinvertebrate community composition and abundance have been estimated monthly from January 2005 to March 2006 in two stations, located respectively 50 m upstream and 50 m downstream of the sewer pipe. At the same time, main physicochemical parameters, microbiological data, and chlorophyll-a concentration were assessed.
DOI: 10.57745/t5yemm
title: Wi-Fi 5 packets capture (802.11ac)

description: This data set includes wireless network capture files (.pcap) on a Wi-Fi 5 (802.11ac) link consisting of one source node and one destination node. This data set comes from the following experiments: a source node sends a CBR data flow (generated with iPerf3) towards a destination node. A third node, configured in monitor mode, captures all the packets it receives, hopefully the packets from the flow we wish to monitor. The monitor node is located close to the destination node. Warning: the monitor node is NOT the destination node. They do not necessarily receive all the same packets. The nodes of the platform are Single-Board Computers (SBC) with APU 4C4 motherboards, each equipped a with Qualcomm Atheros QCA986x/988x 802.11ac Wireless Network Card (WNC) embedding 3 antennas. They run an out-of-the-box Debian 10 (Buster) Operating System (OS) with the 4.19.0-18-amd64 kernel and use the ath10k driver for the wireless network cards (WNC). When not specified, in each experiment, the data flow is saturated, the packet size is the iPerf3 default value (1470 bytes), and there is no obstacle between the communicating nodes. Each experiment has a duration of 120 seconds. We only capture the first 200 bytes of each packet as we are interested in the contents of physical and link levels header (layers 1 and 2 of the TCP/IP stack), thus limiting storage space. The data set is split in several archives. Archive names indicate where experiments have been carried out and whether obstacles were located between the source node and the destination node (more details can be found in each file description). In each archive, file names follow the following format "position""distance""run".pcap: - position indicates the antenna positions: "vertical" for a vertical position, perpendicular to the floor; « horizontal » for a horizontal position, parallel to the floor; « fan » where antennas on the side form an Y while the middle one is vertical; "left" for all the antennas oriented in the same direction (arbitrary chosen); - distance indicate the distance between the source and destination nodes; - run: for each scenarios, 3 runs were made for statistical purpose Please note that archive and file name formats can change with additional information, like the CBR flow throughput or the packet size. In that case, more information are given in the archives’ description.
DOI: 10.57745/pjfecr
title: DLScaff Datasets v1

description: Datasets for training and testing DLScaff. Datasets are saved in the hdf5 file format. Each file is composed of Hi-C matrices, their labels, names and groups for each multiple bin and matrice size. Subsets are classed by the matrice size, then the bin size. Files needed to generate these datasets are also along the .hdf5 file.
DOI: 10.57745/plyncp
title: Guide méthodologique Réseau PRO - Mise en place d’un essai au champ pour l’évaluation agronomique, environnementale et sanitaire d’un Produit Résiduaire Organique

description: Le guide établi en 2024 présente tout d’abord le contexte réglementaire du recyclage agricole (en date de 2014). Il rassemble des protocoles d’essais au champ sur quatre grandes thématiques : azote, phosphore, effets à long terme sur la matière organique du sol, devenir des contaminants, ainsi que l’ensemble des modes opératoires d’échantillonnages, mesures et observations sur les sols, les plantes et les PRO nécessaires à la mise en oeuvre des protocoles. Le document présente également des méthodes de mise en place d’un essai au champ (choix de la parcelle, choix du dispositif expérimental) et des procédures portant sur la qualité agronomique et statistique des données acquises, ainsi que sur l’exploitation statistique de ces données.
DOI: 10.57745/pztz7y
title: Sand

description: Properties of the sand used for experiments in rotary kilns and drums