cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2gkxzy
title: CCDC 2281351: Experimental Crystal Structure Determination

description: Related Article: Ding Luo, Jia-Wen Zou, Jing-Hao Wang, He Tian, Hua-Yan Xie, Tian-Xi Zhu, Hui-Hui Zhu, Lu-Ming Deng, Chun-Lin Fan, Hao Wang, Guo-Cai Wang, Yu-Bo Zhang|2023|Phytochemistry|218|113954|doi:10.1016/j.phytochem.2023.113954
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gmy35
title: CCDC 2283277: Experimental Crystal Structure Determination

description: Related Article: Ding Luo, Jia-Wen Zou, Jing-Hao Wang, He Tian, Hua-Yan Xie, Tian-Xi Zhu, Hui-Hui Zhu, Lu-Ming Deng, Chun-Lin Fan, Hao Wang, Guo-Cai Wang, Yu-Bo Zhang|2023|Phytochemistry|218|113954|doi:10.1016/j.phytochem.2023.113954
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.24988269
title: Supplementary Material for: Cyclin A2 expression as predictive biomarker in muscle-invasive upper tract urothelial carcinoma

description: Introduction: The aim was to evaluate the prognostic value of altered Cyclin A2 (CCNA2) gene expression in upper tract urothelial carcinoma (UTUC) and to assess its predictive potential as prognostic factor for overall survival (OS) and disease-free survival (DFS).
Methods: 62 patients who underwent surgical treatment for UTUC were included. Gene expression of CCNA2, MKI67 and p53 was analyzed by quantitative reverse transcriptase polymerase chain reaction. Survival analyses were performed using the Kaplan-Meier method and the log-rank test. For Cox regression analyses, uni- and multivariable hazard ratios were calculated. Spearman correlation was used to analyze correlation of CCNA2 expression with MKI67 and p53. 
Results: The median age of the cohort was 73 years and it consisted of 48 males (77.4%) and 14 females (22.6%). Patients with high CCNA2 expression levels showed longer OS (HR 0.33; 95% CI 0.15 - 0.74; p = 0.0073). Multivariable Cox regression analyses identified CCNA2 overexpression (HR 0.37; 95% CI 0.16 - 0.85; p = 0.0189) and grading G2 (vs. G3) (HR 0.39; 95% CI 0.17 - 0.87; p = 0.0168) to be independent predictors for longer OS. CCNA2 expression correlated positively with MKI67 expression (Rho = 0.4376, p = 0.0005).
Conclusion: Low CCNA2 expression is significantly associated with worse OS. Thus, CCNA2 might serve as potential biomarker in muscle-invasive UTUC and may be used to characterize a subset of patients having an unfavorable outcome and for future risk-assessment scores.
DOI: 10.6084/m9.figshare.24988269.v1
title: Supplementary Material for: Cyclin A2 expression as predictive biomarker in muscle-invasive upper tract urothelial carcinoma

description: Introduction: The aim was to evaluate the prognostic value of altered Cyclin A2 (CCNA2) gene expression in upper tract urothelial carcinoma (UTUC) and to assess its predictive potential as prognostic factor for overall survival (OS) and disease-free survival (DFS).
Methods: 62 patients who underwent surgical treatment for UTUC were included. Gene expression of CCNA2, MKI67 and p53 was analyzed by quantitative reverse transcriptase polymerase chain reaction. Survival analyses were performed using the Kaplan-Meier method and the log-rank test. For Cox regression analyses, uni- and multivariable hazard ratios were calculated. Spearman correlation was used to analyze correlation of CCNA2 expression with MKI67 and p53. 
Results: The median age of the cohort was 73 years and it consisted of 48 males (77.4%) and 14 females (22.6%). Patients with high CCNA2 expression levels showed longer OS (HR 0.33; 95% CI 0.15 - 0.74; p = 0.0073). Multivariable Cox regression analyses identified CCNA2 overexpression (HR 0.37; 95% CI 0.16 - 0.85; p = 0.0189) and grading G2 (vs. G3) (HR 0.39; 95% CI 0.17 - 0.87; p = 0.0168) to be independent predictors for longer OS. CCNA2 expression correlated positively with MKI67 expression (Rho = 0.4376, p = 0.0005).
Conclusion: Low CCNA2 expression is significantly associated with worse OS. Thus, CCNA2 might serve as potential biomarker in muscle-invasive UTUC and may be used to characterize a subset of patients having an unfavorable outcome and for future risk-assessment scores.
DOI: 10.5281/zenodo.10495033
title: Replication data for: HairSplitter: separating haplotypes with long reads

description: Replication data for the paper "HairSplitter: separating haplotypes with long reads".

Contains 1) Reads used to assemble when not available on public repositories, 2) The assemblies obtained using Flye or hifiasm, 3) The separated assemblies obtained by running the benchmarked software (HairSplitter, Strainberry, stRainy, HaploDMF, iGDA, Strainline) and 4) command lines used to launch the assemblies.
DOI: 10.5519/qd.ffmer8yo
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.7910/dvn/po2jqg
title: Emerging Food and Bioscience Research on Human Health: Safety, Security and Sustainable Aspects

description: About This Books Evolving food practices and their impact on human health are pivotal factors at stake in the current generation, where food security, safety, nutrition, and sustainable food supply chains are becoming priorities of governments and private sectors. Recent food bioscience research and novel technologies drive vertical integration in food systems. The shift towards plant-based animal meat, less calorie and nutritious food and gut gardening functional foods indicates the changing consumer preferences. Developing health-promoting foods is essential in the campaign for creating an eco-friendly food system, and innovations in functional ingredients and unrevealing future foods are critical for feeding the rising human population. This book, consisting of 16 chapters, addresses various aspects of the food supply chain, from production and processing to distribution and consumption. Emerging food and bioscience research on human health: Safety, Security and sustainable aspects addressed in this compendium provide readers with a systematic and in-depth understanding of basic and advanced concepts in food supply chain and production. Security in this context pertains to safeguarding the food supply chain against biological, chemical, or intentional adulteration threats. Sustainability is a core concern encompassing food production and consumption’s environmental impact and long-term viability. This book aims to be a major source of reference material for researchers to identify and mitigate potential hazards through stringent quality control measures and innovative technologies, ensuring that food is safe for consumption. It also highlights current research and technological advances in nutritional enhancement, sustainable agriculture and food safety and security, such as Gene Editing and GMOs. On the other hand, to address waste reduction ideas such as developing sustainable and eco-friendly packaging materials to reduce environmental impact. This comprehensive approach seeks to harmonize the safety, security, and sustainability of food products, aiming to provide safe and nutritious food and ensure that its production is environmentally responsible and capable of meeting the needs of future generations. Integrating these pillars in research and development endeavors reflects a holistic commitment to improving human health and well-being while safeguarding the planet’s resources. We, the editors (especially Dr. S. Vignesh, the Principal Investigator of the SERB-SRG Project) express our sincere gratitude to DST-SERB (DST-SERB-SRG/2021/001005) for their funding support. Further, the editors also thank NIFTEM-T for all the support.
DOI: 10.6084/m9.figshare.24985986
title: 1874-draft(2)_31_12_23-Excel.xlsx

description: This paper is the first to propose an aggregate S-trend factor production function to estimate total factor productivity (TFP) and investment efficiency in an economy. This function implements Charles R. Hulten's organizing principle: to what extent the growth of the economy is due to an increase in "productivity" (progress in technology and organization of production) and to what extent to "capital formation" (increased investment in human capital, knowledge and fixed capital). Estimation of future members of the series is usually done by a forecast model. It is a model that approximates a trend. The Verhulst's S-curve is used as the approximation function. By aggregate S-trend production function we mean a two factor production function It represents the growth of the economy, which is by raw data and takes into account all influencing factors, and is certainly broader than the concept of " capital formation ",is a total factor productivity TFP. The error of approximation is quantitatively measured by the MAPE criterion.
DOI: 10.5281/zenodo.10495122
title: Dayeze Lake
DOI: 10.5281/zenodo.10495123
title: Dayeze Lake
DOI: 10.25934/pr00009433
title: A new Statistical method to balance Social Network Effect and Covariate Effect in Response Adaptive Design

description: Traditional Randomized Control Trials (RCT) divide patients evenly between a trial group (e.g., receiving a new drug) and a control group (e.g., receiving standard therapy or placebo). A different method of assigning patients to treatment groups in clinical trials is Response adaptive randomization (RAR). RAR aims to assign more patients to the better treatment based on patient responses already accrued in the trial. Thus, RAR is more ethical than RCT, especially for those who would have been allocated to the group receiving the inferior treatment.

In real clinical trials other factors may affect the outcomes of the trial, causing an imbalance between different groups, resulting in an inaccurate estimate of the final drug effect.

One factor is the patient's network effect (i.e., the patient's social network relationship, for example if patient A and patient B are friends), where for example in a routine vaccine trials, if the vaccine works, a person with a friend in the vaccine group is less likely to develop the infectious disease than a person with a friend in the placebo group, because they are less likely to be exposed to the source of infection.

Another factor is the patient's covariate effect (i.e., the patient’s characteristics, such as gender, age, ethnicity, etc.), where if the treatment group is all men and the placebo group is all women, it is difficult to tell whether the drug really works or the drug only works for one sex.

To solve this problem, we are introducing a new randomization method, Network and covariate adjusted response adaptive randomization(NCARAR), which adaptively assigns patients in a sequential manner (one by one, or group by group) based on the current level of imbalance (including network and covariate imbalances), the outcomes of previous subjects (e.g. cured or uncured after treatment), and the characteristics (e.g. gender, age of the patient) and social network relationships (e.g. the number of friends in different groups) of the patients to be assigned to a group.

This method has demonstrated significant advantages over traditional methods in terms of network and covariate balance, and estimation accuracy, and has been widely used in causal inference (A methodology for studying causal relationships between things) and clinical trials.
We require the requested clinical trial data to validate the effectiveness of our approach.
DOI: 10.25430/researchdata.cab.unipd.it.00001167
title: Logging residues mass and volume from systematic literature review

description: Creation of a benchmark for logging residues after harvesting operations and forest management treatments. 
This dataset represents the most up-to-date collection of studies related to quantity and volume values of logging residue and shows how the relationship with working systems, treatments, and forest type is affecting these values.
The dataset can be used to establish a line of comparison for further research and applications in the field of forest management giving insights on quantities that could be potentially present after harvesting operations.
DOI: 10.6084/m9.figshare.22635019.v1
title: Edge supercurrent reveals competition between condensates in a Weyl superconductor

description: Excel data files for Fig. 1a, 1b, 1c, 1d and 1e; Fig. 2a, 2b, 2c and 2d; Fig. 3a, 3b, 3c, 3d; Fig. 4e, 4f, 4g, 4h, 4i, 4j, 4k, 4l; Fig. 5a, 5b, and 5c; Fig. 6c, 6d, 6e, 6f, 6g.
DOI: 10.6084/m9.figshare.22635019
title: Edge supercurrent reveals competition between condensates in a Weyl superconductor

description: Excel data files for Fig. 1a, 1b, 1c, 1d and 1e; Fig. 2a, 2b, 2c and 2d; Fig. 3a, 3b, 3c, 3d; Fig. 4e, 4f, 4g, 4h, 4i, 4j, 4k, 4l; Fig. 5a, 5b, and 5c; Fig. 6c, 6d, 6e, 6f, 6g.
DOI: 10.6084/m9.figshare.24260326.v1
title: Visible-Light-Driven Thiolate-Catalyzed Carboxylation of C(sp2)–H Bonds in Azines with CO2

description: Catalytic carboxylation of C−H bonds with CO2 represents a sustainable and economic strategy to produce valuable carboxylic acids. However, it is highly challenging due to their low reactivities and selectivity issue. Although great progress has been achieved in this field, catalytic carboxylation of C−H bonds in azines (nitrogen-containing aromatic heterocycles), which are important and widely-existing, with CO2 is still challenging. Herein, we report a novel visible-light-driven thiolate-catalyzed carboxylation of C(sp2)−H bonds in azines with CO2. A variety of azines, such as quinolines, pyridines, phenanthroline, naphthyridine, and acridine, undergo such a catalytic carboxylation smoothly. This strategy also features high regioselectivity, mild and transition-metal-free reaction conditions, high step-, atom-, and redox-economy, good functional group tolerance as well as facile scalability. The utility of this method is demonstrated by efficient synthesis of bioactive molecules, such as cinchophen and brequinar derivatives, as well as precise modification of commonly-used N-ligands, including bipyridines, terpyridine and phenanthroline. Mechanistic investigations support the formation of electron donor-acceptor (EDA) complexes between thiolates and azines.
DOI: 10.6084/m9.figshare.24260326
title: Visible-Light-Driven Thiolate-Catalyzed Carboxylation of C(sp2)–H Bonds in Azines with CO2

description: Catalytic carboxylation of C−H bonds with CO2 represents a sustainable and economic strategy to produce valuable carboxylic acids. However, it is highly challenging due to their low reactivities and selectivity issue. Although great progress has been achieved in this field, catalytic carboxylation of C−H bonds in azines (nitrogen-containing aromatic heterocycles), which are important and widely-existing, with CO2 is still challenging. Herein, we report a novel visible-light-driven thiolate-catalyzed carboxylation of C(sp2)−H bonds in azines with CO2. A variety of azines, such as quinolines, pyridines, phenanthroline, naphthyridine, and acridine, undergo such a catalytic carboxylation smoothly. This strategy also features high regioselectivity, mild and transition-metal-free reaction conditions, high step-, atom-, and redox-economy, good functional group tolerance as well as facile scalability. The utility of this method is demonstrated by efficient synthesis of bioactive molecules, such as cinchophen and brequinar derivatives, as well as precise modification of commonly-used N-ligands, including bipyridines, terpyridine and phenanthroline. Mechanistic investigations support the formation of electron donor-acceptor (EDA) complexes between thiolates and azines.
DOI: 10.6084/m9.figshare.24615921.v1
title: Disordered-to-ordered transitions in assembly factors allow the complex II catalytic subunit to switch binding partners

description: Source data associated with Sharma et al "Disordered-to-ordered transitions in assembly factors allow the complex II catalytic subunit to switch binding partners"
DOI: 10.6084/m9.figshare.24615921
title: Disordered-to-ordered transitions in assembly factors allow the complex II catalytic subunit to switch binding partners

description: Source data associated with Sharma et al "Disordered-to-ordered transitions in assembly factors allow the complex II catalytic subunit to switch binding partners"
DOI: 10.6084/m9.figshare.24711969
title: Significantly wetter or drier future conditions for one to two thirds of the world's population

description: Collection of gridded datasets produced by the paper including:
Model agreement
Trend probabilities
Trend slopes
Average precipitation 
Impacted population (current and future)
Regionalizations at country and state levels
Seasonal dominance of trends
DOI: 10.6084/m9.figshare.24711969.v1
title: Significantly wetter or drier future conditions for one to two thirds of the world's population

description: Collection of gridded datasets produced by the paper including:
Model agreement
Trend probabilities
Trend slopes
Average precipitation 
Impacted population (current and future)
Regionalizations at country and state levels
Seasonal dominance of trends
DOI: 10.25403/upresearchdata.24152106
title: Phylogenomics and comparative genomics analyses of Bradyrhizobium and its species

description: This supplementary material data file contains figures and tables for each chapter of a PhD thesis titled "Genome-based systematics of Bradyrhizobium and its species". There are 4 folders, each labeled Chapter 2 to Chapter 5. Figures and tables depict information of various topics discussed in the thesis such as Bradyrhizobium supergroups based on phylogenomics, photosynthesis genes and synteny patterns found in Bradyrhizobium as well as the description of novel Bradyrhizobium species from South Africa. Chapters given as files correspond to the chapters in the PhD thesis.
DOI: 10.25403/upresearchdata.24152106.v1
title: Phylogenomics and comparative genomics analyses of Bradyrhizobium and its species

description: This supplementary material data file contains figures and tables for each chapter of a PhD thesis titled "Genome-based systematics of Bradyrhizobium and its species". There are 4 folders, each labeled Chapter 2 to Chapter 5. Figures and tables depict information of various topics discussed in the thesis such as Bradyrhizobium supergroups based on phylogenomics, photosynthesis genes and synteny patterns found in Bradyrhizobium as well as the description of novel Bradyrhizobium species from South Africa. Chapters given as files correspond to the chapters in the PhD thesis.
DOI: 10.13145/bacdive1.20230509.8
title: Acetobacter aceti (Pasteur 1864) Beijerinck 1898

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.18712/nsd-nsd3141-v1
title: Travel survey 2021 -  3rd quarter, person file

description: The Travel Survey (Travel and Holiday Survey until 2021) is a continuation of the Omnibus Survey conducted by Statistics Norway in the years 1992-2004. The Travel Survey is conducted four times a year, once every quarter. The main purpose of the survey is to map out the travel habits of Norwegians, in Norway and abroad. In addition to data on Norwegians' travel habits, data is also collected on cross-border trade, attitudes towards aid, cultural monuments and cultural environments, use of tobacco and alcohol, wood burning, influenza vaccine, and attitudes towards immigration. Some topics are included every quarter, while others are included only once or twice a year.

For each quarter of 2021, a sample of 2,000 people aged 16 to 79 was drawn. This is the person file for the third quarter. Special themes for this quarter are daytrips abroad, usage of tobacco and alcohol and attitudes towards immigration.
DOI: 10.18712/nsd-nsd3142-v1
title: Travel Survey 2021 - 3rd quarter, travel file

description: The Travel Survey (Travel and Holiday Survey until 2021) is a continuation of the Omnibus Survey conducted by Statistics Norway in the years 1992-2004. The Travel Survey is conducted four times a year, once every quarter. The main purpose of the survey is to map out the travel habits of Norwegians in Norway and abroad. In addition to data on Norwegians' travel habits, data is also collected on cross-border trade, attitudes towards aid, cultural monuments and cultural environments, use of tobacco and alcohol, wood burning, influenza vaccine, and attitudes towards immigration. Some topics are included every quarter, while others are included only once or twice a year.

For each quarter of 2021, a sample of 2,000 people aged 16 to 79 was drawn. This is the travel file for the third quarter. Special themes for this quarter are daytrips abroad, usage of tobacco and alcohol and attitudes towards immigration.
DOI: 10.18712/nsd-nsd3166-v6
title: TNS Gallup AS, 1964-2010, time series

description: This is a time series of opinion polls done by TNS Gallup AS in the period 1964-2010.
All variables that are repeated atleast once in this time frame have been included in the cumulative file. This means that the sample will vary from variable to variable.
As a consequence, there will be a bigger sample for background variables such as gender and age than for other variables.
DOI: 10.13145/bacdive2.20230509.8
title: Acetobacter aceti (Pasteur 1864) Beijerinck 1898

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive3.20230509.8
title: Acetobacter cerevisiae Cleenwerck et al. 2002

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4.20230509.8
title: Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5.20230509.8
title: Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6.20230509.8
title: Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7.20230509.8
title: Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8.20230509.8
title: Acetobacter orleanensis (Henneberg 1906) Lisdiyanti et al. 2001

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9.20230509.8
title: Acetobacter lovaniensis (Frateur 1950) Lisdiyanti et al. 2001

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10.20230509.8
title: Acetobacter estunensis (Carr 1958) Lisdiyanti et al. 2001

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.