cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.24435/materialscloud:yf-m8
title: A general framework for active space embedding methods: applications in quantum computing

description: We developed a general framework for hybrid quantum-classical computing of molecular and periodic embedding calculations based on an orbital space separation of the fragment and environment degrees of freedom. We show its potential by presenting a specific implementation of periodic range-separated DFT coupled to a quantum circuit ansatz, whereby the variational quantum eigensolver and the quantum equation-of-motion approach are used to obtain the low-lying spectrum of the embedded fragment Hamiltonian.
Application of this scheme to study strongly correlated molecular systems and localized electronic states in materials is showcased through the accurate prediction of the optical properties for the neutral oxygen vacancy in magnesium oxide (MgO). Despite some discrepancies in absorption predictions, the method demonstrates competitive performance with state-of-the-art ab initio approaches, particularly evidenced by the accurate prediction of the photoluminescence emission peak.
DOI: 10.24435/materialscloud:7f-5t
title: Influence of the hBN dielectric layers on the quantum transport properties of MoS2 transistors.

description: An ab initio  study of the coupled electrons and phonon transport properties of MoS2-hBN devices. A comparison of the device characteristics when hBN is treated as a perfectly insulating, non vibrating layer and one where it is included in the DFT together with MoS2.
DOI: 10.24435/materialscloud:bv-18
title: Influence of the hBN dielectric layers on the quantum transport properties of MoS2 transistors.

description: An ab initio  study of the coupled electrons and phonon transport properties of MoS2-hBN devices. A comparison of the device characteristics when hBN is treated as a perfectly insulating, non vibrating layer and one where it is included in the DFT together with MoS2.
DOI: 10.24435/materialscloud:ck-7m
title: Probing magnetic orbitals and Berry curvature with circular dichroism in resonant inelastic X-ray scattering

description: Resonant inelastic X-ray scattering (RIXS) can probe localized excitations at selected atoms in materials, including particle-hole transitions from valence to the conduction bands. These transitions are governed by fundamental prop- erties of the corresponding Bloch wave-functions, including orbital and mag- netic degrees of freedom, and quantum geometric properties such as the Berry curvature. In particular, orbital angular momentum (OAM), which is closely linked to the Berry curvature, can exhibit a nontrivial momentum dependence. We demonstrate how information on such OAM textures can be extracted from the circular dichroism in RIXS. Based on accurate modeling with first-principles treatment of the key ingredient – the light-matter interaction – we simulate dichroic RIXS spectra for the prototypical transition metal dichalcogenide MoSe₂ and the two-dimensional topological insulator 1T′-MoS₂ . Guided by an in- tuitive picture for the optical selection rules, we discuss how the momentum- dependent OAM manifests itself in the dichroic RIXS signal if one controls the momentum transfer. Our calculations are performed for typical experimental geometries and parameter regimes, and demonstrate the possibility of observ- ing the predicted circular dichroism in forthcoming experiments. Thus, our work establishes a new avenue to observing Berry curvature and topological states in quantum materials.

The simulated RIXS spectra and the scripts to generate the plots in this work are available in this archive.
DOI: 10.24435/materialscloud:27-pg
title: Probing magnetic orbitals and Berry curvature with circular dichroism in resonant inelastic X-ray scattering

description: Resonant inelastic X-ray scattering (RIXS) can probe localized excitations at selected atoms in materials, including particle-hole transitions from valence to the conduction bands. These transitions are governed by fundamental prop- erties of the corresponding Bloch wave-functions, including orbital and mag- netic degrees of freedom, and quantum geometric properties such as the Berry curvature. In particular, orbital angular momentum (OAM), which is closely linked to the Berry curvature, can exhibit a nontrivial momentum dependence. We demonstrate how information on such OAM textures can be extracted from the circular dichroism in RIXS. Based on accurate modeling with first-principles treatment of the key ingredient – the light-matter interaction – we simulate dichroic RIXS spectra for the prototypical transition metal dichalcogenide MoSe₂ and the two-dimensional topological insulator 1T′-MoS₂ . Guided by an in- tuitive picture for the optical selection rules, we discuss how the momentum- dependent OAM manifests itself in the dichroic RIXS signal if one controls the momentum transfer. Our calculations are performed for typical experimental geometries and parameter regimes, and demonstrate the possibility of observ- ing the predicted circular dichroism in forthcoming experiments. Thus, our work establishes a new avenue to observing Berry curvature and topological states in quantum materials.

The simulated RIXS spectra and the scripts to generate the plots in this work are available in this archive.
DOI: 10.24435/materialscloud:rb-ny
title: Experimental and theoretical study of stable and metastable phases in sputtered CuInS2

description: The chalcopyrite Cu(In,Ga)S2 has gained renewed interest in recent years due to its potential application in tandem solar cells. In this contribution, a combined theoretical and experimental approach is applied to investigate stable and metastable phases forming in sputtered CuInS2 (CIS) thin films. Ab initio calculations are performed to obtain formation energies, X-ray diffraction patterns, and Raman spectra of various CIS polytypes and related compounds. Multiple low-energy CIS structures with zinc-blende and wurtzite-derived lattices are identified and their XRD/Raman patterns are shown to contain many overlapping features, which could lead to misidentification unless the techniques are duly combined and analyzed. The results are verified against experimental XRD/Raman spectra measured on a series of CIS films with different compositions and treated at different temperatures, revealing the formation of several CIS polymorphs and secondary phases. The characteristic features and the mechanisms behind the formation of different phases are discussed with the focus on the thin-film photovoltaic application of CIS. The dataset contains structures and VASP output files used to derive the discussed trends.
DOI: 10.24435/materialscloud:wh-nv
title: Oxygen evolution and reduction on Fe‑doped NiOOH

description: This dataset includes the full computational workflows of a proof-of-concept study of various possible mechanisms (standard and bifunctional ones) for oxygen evolution reaction (OER) and oxygen reduction reaction (ORR) on exfoliated NiOOH as electrocatalyst, including active edge sites (M5) and hydrogen acceptor sites in the same model system. Furthermore, explicit water is included in the model to describe the equilibration of the M-OOH species to M-OOH/eq, a crucial step that enables a bifunctional route to be operative. Additionally, different single Fe-dopant positions (M1, M2, M3, M4, M5, M6 and M7) are considered and four different reaction schemes (S1, S2, S3 and S4) are studied for the OER and the reverse ORR process. The results are relevant in alkaline conditions, where the studied model systems are stable. Certain Fe-dopant positions result in active Ni-edge sites with very low overpotentials provided that water is present within the model system.
DOI: 10.24435/materialscloud:hw-kh
title: Oxygen evolution and reduction on Fe‑doped NiOOH

description: This dataset includes the full computational workflows of a proof-of-concept study of various possible mechanisms (standard and bifunctional ones) for oxygen evolution reaction (OER) and oxygen reduction reaction (ORR) on exfoliated NiOOH as electrocatalyst, including active edge sites (M5) and hydrogen acceptor sites in the same model system. Furthermore, explicit water is included in the model to describe the equilibration of the M-OOH species to M-OOH/eq, a crucial step that enables a bifunctional route to be operative. Additionally, different single Fe-dopant positions (M1, M2, M3, M4, M5, M6 and M7) are considered and four different reaction schemes (S1, S2, S3 and S4) are studied for the OER and the reverse ORR process. The results are relevant in alkaline conditions, where the studied model systems are stable. Certain Fe-dopant positions result in active Ni-edge sites with very low overpotentials provided that water is present within the model system.
DOI: 10.24435/materialscloud:pd-j6
title: Nuclear quantum effects on the electronic structure of water and ice

description: The electronic properties and optical response of ice and water are intricately shaped by their molecular structure, including the quantum mechanical nature of hydrogen atoms. Despite numerous former studies, a comprehensive understanding of nuclear quantum effects (NQE) on the electronic structure of water and ice at finite temperatures remains elusive. Here, we utilize molecular simulations that harness efficient machine-learning potentials and many-body perturbation theory to assess how NQEs impact the electronic bands of water and hexagonal ice. By comparing path-integral and classical simulations, we find that NQEs lead to a larger renormalization of the fundamental gap of ice, compared to that of water, ultimately yielding similar bandgaps in the two systems, consistent with experimental estimates. Our calculations suggest that the increased quantum mechanical delocalization of protons in ice, relative to water, is a key factor leading to the enhancement of NQEs on the electronic structure of ice.
DOI: 10.24435/materialscloud:nf-hr
title: Solids that are also liquids: elastic tensors of superionic materials

description: This work presents an application of the strain-fluctuation method, exploiting the fluctuations of the strain from extensive first-principles molecular dynamics simulations in the isobaric-isothermal ensemble, to the study of the elastic tensors of superionic materials. As the superionic materials for solid-state electrolyte applications usually do not have well-defined ground-state configurations, it is challenging to apply the static methods to calculate the elastic tensors of these materials. Instead, the strain-fluctuation method captures the dynamical nature of the elastic response of these materials and is a promising approach to studying their elastic properties. In this work: a protocol is presented and documented to extract the elastic the elastic moduli and their statistical errors from the molecular dynamics trajectories (open-source code available at https://github.com/materzanini); results for two benchmark superionic materials (Li₁₀GeP₂S₁₂ and Li₁₀GeP₂O₁₂) are given; for these superionic materials, a comparison to static methods is also provided, showing that static methods overestimate the moduli with respect to the correct dynamical treatment by ~25-50%.
DOI: 10.24435/materialscloud:yk-00
title: Nuclear quantum effects on the electronic structure of water and ice

description: The electronic properties and optical response of ice and water are intricately shaped by their molecular structure, including the quantum mechanical nature of hydrogen atoms. Despite numerous former studies, a comprehensive understanding of nuclear quantum effects (NQE) on the electronic structure of water and ice at finite temperatures remains elusive. Here, we utilize molecular simulations that harness efficient machine-learning potentials and many-body perturbation theory to assess how NQEs impact the electronic bands of water and hexagonal ice. By comparing path-integral and classical simulations, we find that NQEs lead to a larger renormalization of the fundamental gap of ice, compared to that of water, ultimately yielding similar bandgaps in the two systems, consistent with experimental estimates. Our calculations suggest that the increased quantum mechanical delocalization of protons in ice, relative to water, is a key factor leading to the enhancement of NQEs on the electronic structure of ice.
DOI: 10.24435/materialscloud:m9-kv
title: Solids that are also liquids: elastic tensors of superionic materials

description: This work presents an application of the strain-fluctuation method, exploiting the fluctuations of the strain from extensive first-principles molecular dynamics simulations in the isobaric-isothermal ensemble, to the study of the elastic tensors of superionic materials. As the superionic materials for solid-state electrolyte applications usually do not have well-defined ground-state configurations, it is challenging to apply the static methods to calculate the elastic tensors of these materials. Instead, the strain-fluctuation method captures the dynamical nature of the elastic response of these materials and is a promising approach to studying their elastic properties. In this work: a protocol is presented and documented to extract the elastic the elastic moduli and their statistical errors from the molecular dynamics trajectories (open-source code available at https://github.com/materzanini); results for two benchmark superionic materials (Li₁₀GeP₂S₁₂ and Li₁₀GeP₂O₁₂) are given; for these superionic materials, a comparison to static methods is also provided, showing that static methods overestimate the moduli with respect to the correct dynamical treatment by ~25-50%.
DOI: 10.24435/materialscloud:20-sh
title: Oxygen evolution reaction by a palladium foil in the presence of iron

description: This dataset includes the full computational workflows of a density functional theory based thermodynamics model for the overpotential of the oxygen evolution reaction (OER) on an oxidized palladium surface. The model assumes an oxygen bridge vacancy as an active site on the 110 surface of the tetragonal PdO2 (rutile type structure). The critical OER potential has been computed with variation of the Fe modifyer type, either dopant or adsorbate, and modifyer position. Furthermore, an alternative bifunctional pathway of OER has been considered by adding an H atom to an auxiliary O-bridge site from which the proton−electron pair for second OER reaction step is released rather than from the hydroxylated active site. The computed OER overpotential on the Fe-free surface via this bifunctional route is 0.42 V. A substitution of Pd with Fe directly at this active site further reduces the calculated OER overpotential, over the same route, to 0.35 V. This 70 mV decrease in overpotential is in good agreement with the experimentally measured decrease of 60 mV in the onset potential.
DOI: 10.24435/materialscloud:78-hj
title: Oxygen evolution reaction by a palladium foil in the presence of iron

description: This dataset includes the full computational workflows of a density functional theory based thermodynamics model for the overpotential of the oxygen evolution reaction (OER) on an oxidized palladium surface. The model assumes an oxygen bridge vacancy as an active site on the 110 surface of the tetragonal PdO2 (rutile type structure). The critical OER potential has been computed with variation of the Fe modifyer type, either dopant or adsorbate, and modifyer position. Furthermore, an alternative bifunctional pathway of OER has been considered by adding an H atom to an auxiliary O-bridge site from which the proton−electron pair for second OER reaction step is released rather than from the hydroxylated active site. The computed OER overpotential on the Fe-free surface via this bifunctional route is 0.42 V. A substitution of Pd with Fe directly at this active site further reduces the calculated OER overpotential, over the same route, to 0.35 V. This 70 mV decrease in overpotential is in good agreement with the experimentally measured decrease of 60 mV in the onset potential.
DOI: 10.24435/materialscloud:zb-71
title: On double-descent in uncertainty quantification in overparametrized models (code)

description: Uncertainty quantification is a central challenge in reliable and trustworthy machine learning. Naive measures such as last-layer scores are well-known to yield overconfident estimates in the context of overparametrized neural networks. Several methods, ranging from temperature scaling to different Bayesian treatments of neural networks, have been proposed to mitigate overconfidence, most often supported by the numerical observation that they yield better calibrated uncertainty measures. In this work, we provide a sharp comparison between popular uncertainty measures for binary classification in a mathematically tractable model for overparametrized neural networks: the random features model. We discuss a trade-off between classification accuracy and calibration, unveiling a double descent like behavior in the calibration curve of optimally regularized estimators as a function of overparametrization. This is in contrast with the empirical Bayes method, which we show to be well calibrated in our setting despite the higher generalization error and overparametrization.
This record provides the code to reproduce the numerical experiments of the related paper "On double-descent in uncertainty quantification in overparametrized models".
DOI: 10.24435/materialscloud:tg-8p
title: "Fraternal-twin" ferroelectricity:  competing polar states in hydrogen-doped samarium nickelate from first principles

description: This work explores hydrogen-doped samarium nickelate from first-principles calculations. At a concentration of 1/4 hydrogen per formula unit we find a number of polar states due to the presence of the interstitial hydrogen. Physically, the polarization of the material arises from the localization of the hydrogen's valence electron on a nearby nickel-oxygen octahedron leading to a local dipole. Due to the inherent tilt pattern present in samarium nickelate, a perovskite with an a-a-c+ tilt pattern, there is an insurmountable energy barrier to switch a given polar state the structure related by inversion symmetry. Instead, we use an in-plane epitaxial constraint to tune the total energy of two structures to be equal. These two structures, unrelated by a cell-symmetry operation, have similar a similar position of the interstitial hydrogen atom, but the valence electron localizes on a different nickel-oxygen octahedron leading to different polarizations. We find that there is a surmountable energy barrier to switch between these two structures.
DOI: 10.24435/materialscloud:x6-2t
title: On double-descent in uncertainty quantification in overparametrized models (code)

description: Uncertainty quantification is a central challenge in reliable and trustworthy machine learning. Naive measures such as last-layer scores are well-known to yield overconfident estimates in the context of overparametrized neural networks. Several methods, ranging from temperature scaling to different Bayesian treatments of neural networks, have been proposed to mitigate overconfidence, most often supported by the numerical observation that they yield better calibrated uncertainty measures. In this work, we provide a sharp comparison between popular uncertainty measures for binary classification in a mathematically tractable model for overparametrized neural networks: the random features model. We discuss a trade-off between classification accuracy and calibration, unveiling a double descent like behavior in the calibration curve of optimally regularized estimators as a function of overparametrization. This is in contrast with the empirical Bayes method, which we show to be well calibrated in our setting despite the higher generalization error and overparametrization.
This record provides the code to reproduce the numerical experiments of the related paper "On double-descent in uncertainty quantification in overparametrized models".
DOI: 10.24435/materialscloud:gt-m2
title: "Fraternal-twin" ferroelectricity:  competing polar states in hydrogen-doped samarium nickelate from first principles

description: This work explores hydrogen-doped samarium nickelate from first-principles calculations. At a concentration of 1/4 hydrogen per formula unit we find a number of polar states due to the presence of the interstitial hydrogen. Physically, the polarization of the material arises from the localization of the hydrogen's valence electron on a nearby nickel-oxygen octahedron leading to a local dipole. Due to the inherent tilt pattern present in samarium nickelate, a perovskite with an a-a-c+ tilt pattern, there is an insurmountable energy barrier to switch a given polar state the structure related by inversion symmetry. Instead, we use an in-plane epitaxial constraint to tune the total energy of two structures to be equal. These two structures, unrelated by a cell-symmetry operation, have similar a similar position of the interstitial hydrogen atom, but the valence electron localizes on a different nickel-oxygen octahedron leading to different polarizations. We find that there is a surmountable energy barrier to switch between these two structures.
DOI: 10.24435/materialscloud:hf-ar
title: Transport coefficients from equilibrium molecular dynamics

description: The determination of transport coefficients through the time-honoured Green-Kubo theory of linear response and equilibrium molecular dynamics requires significantly longer simulation times than those of equilibrium properties, while being further hindered by the lack of well-established data-analysis techniques to evaluate the statistical accuracy of the results. Leveraging recent advances in the spectral analysis of the current time series associated to molecular trajectories, we introduce a new method to estimate the full (diagonal as well as off-diagonal) Onsager matrix of transport coefficients from a single statistical model. This approach, based on the knowledge of the statistical distribution of the Onsager-matrix samples in the frequency domain, unifies the evaluation of diagonal (conductivities and viscosities) and off-diagonal (e.g., thermoelectric) transport coefficients within a comprehensive framework, significantly improving the reliability of transport coefficient estimation for materials ranging from molten salts to solid-state electrolytes. We validate the accuracy of this method against existing approaches using benchmark data on molten cesium fluoride and liquid water, and conclude our presentation with the computation of various transport coefficients of the Li₃PS₄ solid-state electrolyte.
DOI: 10.24435/materialscloud:4b-74
title: Transport coefficients from equilibrium molecular dynamics

description: The determination of transport coefficients through the time-honoured Green-Kubo theory of linear response and equilibrium molecular dynamics requires significantly longer simulation times than those of equilibrium properties, while being further hindered by the lack of well-established data-analysis techniques to evaluate the statistical accuracy of the results. Leveraging recent advances in the spectral analysis of the current time series associated to molecular trajectories, we introduce a new method to estimate the full (diagonal as well as off-diagonal) Onsager matrix of transport coefficients from a single statistical model. This approach, based on the knowledge of the statistical distribution of the Onsager-matrix samples in the frequency domain, unifies the evaluation of diagonal (conductivities and viscosities) and off-diagonal (e.g., thermoelectric) transport coefficients within a comprehensive framework, significantly improving the reliability of transport coefficient estimation for materials ranging from molten salts to solid-state electrolytes. We validate the accuracy of this method against existing approaches using benchmark data on molten cesium fluoride and liquid water, and conclude our presentation with the computation of various transport coefficients of the Li₃PS₄ solid-state electrolyte.