cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12003651
title: Matched Longitudinal Image Pairs for Development

description: Validation dataset for the paper:Chen, M., Cooper, R.F., Gee, J.C., Brainard, D.H. and Morgan, J.I., 2019. Automatic longitudinal montaging of adaptive optics retinal images using constellation matching. Biomedical Optics Express, 10(12), pp.6476-6496.<br>Matched pairs of longitudinal AO image triplets (confocal, split detection, dark field) at 30 retinal locations across 5 subjects. This dataset was used for tuning during the development stage of the algorithm. The intensity for the split detection in the earlier dataset for each subject was inverted to maintain consistent orientation with current protocols.
DOI: 10.6084/m9.figshare.12003225
title: Longitudinal Healthy Multi-modal AO Datasets With Two Timepoints

description: Validation dataset for the paper:Chen, M., Cooper, R.F., Gee, J.C., Brainard, D.H. and Morgan, J.I., 2019. Automatic longitudinal montaging of adaptive optics retinal images using constellation matching. Biomedical Optics Express, 10(12), pp.6476-6496.<br>4 complete longitudinal AO imaging datasets of healthy subjects, with two timepoints. Each retinal location contains 3 channels (confocal, split detection, dark field). The intensity for the split detection in the earlier dataset for each subject was inverted to maintain consistent orientation with current protocols.
DOI: 10.15468/gx33x0
title: Global Register of Introduced and Invasive Species - Timor-Leste

description: The Global Register of Introduced and Invasive Species (GRIIS) presents validated and verified national checklists of introduced (alien) and invasive alien species at the country, territory, and associated island level. Checklists are living entities, especially for biological invasions given the growing nature of the problem. GRIIS checklists are based on a published methodology and supported by the Integrated Publishing Tool that jointly enable ongoing improvements and updates to expand their taxonomic coverage and completeness. Phase 1 of the project focused on developing validated and verified checklists of countries that are Party to the Convention on Biological Diversity (CBD). Phase 2 aimed to achieve global coverage including non-party countries and all overseas territories of countries, e.g. those of the Netherlands, France, and the United Kingdom. All kingdoms of organisms occurring in all environments and systems are covered. Checklists are reviewed and verified by networks of country or species experts. Verified checklists/ species records, as well as those under review, are presented on the online GRIIS website (www.griis.org) in addition to being published through the GBIF Integrated Publishing Tool.
DOI: 10.6084/m9.figshare.3717249.v1
title: Selected Pairs for Overlap Analysis of Montaging Algorithm

description: Collection of 2 overlapping pairs of images, selected at random from each dataset. Used for evaluating the montaging algorithm's accuracy with decreasing amount of overlap.<br>Please reference the following paper when using this dataset.<br><br>Chen, M., Cooper, R.F., Han, G.K., Gee, J., Brainard, D.H. and Morgan, J.I., 2016. Multi-modal automatic montaging of adaptive optics retinal images. Biomedical optics express, 7(12), p.4899.<br><br>
DOI: 10.6084/m9.figshare.3717249
title: Selected Pairs for Overlap Analysis of Montaging Algorithm

description: Collection of 2 overlapping pairs of images, selected at random from each dataset. Used for evaluating the montaging algorithm's accuracy with decreasing amount of overlap.<br>Please reference the following paper when using this dataset.<br><br>Chen, M., Cooper, R.F., Han, G.K., Gee, J., Brainard, D.H. and Morgan, J.I., 2016. Multi-modal automatic montaging of adaptive optics retinal images. Biomedical optics express, 7(12), p.4899.<br><br>
DOI: 10.6084/m9.figshare.3707955.v1
title: Manual Montages for the AO Dataset

description: Contains manually constructed montages for the Multi-modal AO Datasets.<br>Each directory contains the full manual montage together (as a Photoshop file) and separately as individual image.<br>Please reference the following paper when using this dataset.<br><br>Chen, M., Cooper, R.F., Han, G.K., Gee, J., Brainard, D.H. and Morgan, J.I., 2016. Multi-modal automatic montaging of adaptive optics retinal images. Biomedical optics express, 7(12), p.4899.<br><br>
DOI: 10.6084/m9.figshare.3707955
title: Manual Montages for the AO Dataset

description: Contains manually constructed montages for the Multi-modal AO Datasets.<br>Each directory contains the full manual montage together (as a Photoshop file) and separately as individual image.<br>Please reference the following paper when using this dataset.<br><br>Chen, M., Cooper, R.F., Han, G.K., Gee, J., Brainard, D.H. and Morgan, J.I., 2016. Multi-modal automatic montaging of adaptive optics retinal images. Biomedical optics express, 7(12), p.4899.<br><br>
DOI: 10.6084/m9.figshare.3564354
title: Multi-modal AO Datasets

description: This dataset contains multi-modal AOSLO image sets of eight eyes of five normal sighted volunteers (Control), two eyes of two patients diagnosed with central serous chorioretinopathy (CSCR), and one eye of a patient diagnosed with retinitis pigmentosa (RP).Each image set also includes a photoshop file containing a manual montage of the images.<br>Please reference the following paper when using this dataset.<br><br>Chen, M., Cooper, R.F., Han, G.K., Gee, J., Brainard, D.H. and Morgan, J.I., 2016. Multi-modal automatic montaging of adaptive optics retinal images. Biomedical optics express, 7(12), p.4899.<br><br>
DOI: 10.6084/m9.figshare.12939986
title: Homerange Sizes of GFWO

description: Homerange sizes were determined with 120 observations and minimum convex polygons. Insects were collected and weighed to provide biomass per each order of insect. Territory size is in square meters. <br><br>Also included in the R code to determine correlations with insect biomass and golden-fronted woodpecker homerange sizes. <br>
DOI: 10.6084/m9.figshare.12939986.v1
title: Homerange Sizes of GFWO

description: Homerange sizes were determined with 120 observations and minimum convex polygons. Insects were collected and weighed to provide biomass per each order of insect. Territory size is in square meters. <br><br>Also included in the R code to determine correlations with insect biomass and golden-fronted woodpecker homerange sizes. <br>
DOI: 10.6084/m9.figshare.12935003
title: Vertical OCT Data

description: High resolution OCT scans of the vertical meridian in the retina of 50 healthy subjects, with manual segmentations of the GCL and IPL.
DOI: 10.6084/m9.figshare.12932663
title: Extended and Montaged Horizontal OCT Data

description: 3 montaged gigh resolution OCT scans of the horizontal meridian, covering +/- 30 degrees eccentricity in the retina, and manual segmentations of the GCL and IPL.
DOI: 10.6084/m9.figshare.12932663.v1
title: Extended and Montaged Horizontal OCT Data

description: 3 montaged gigh resolution OCT scans of the horizontal meridian, covering +/- 30 degrees eccentricity in the retina, and manual segmentations of the GCL and IPL.
DOI: 10.6084/m9.figshare.12935003.v1
title: Vertical OCT Data

description: High resolution OCT scans of the vertical meridian in the retina of 50 healthy subjects, with manual segmentations of the GCL and IPL.
DOI: 10.6084/m9.figshare.12939992
title: Data and R code associated with the publication: Secondhand Homes

description: The files "Territory Size final.csv" and "Territory size.R" are the raw data and r code associated with the homerange sizes of the golden-fronted woodpecker, along with the biomass of each order of insect collected on the territories. <br><br>The files "All Cavities.csv" and "Model Averaging.R" refer to the raw data on the nest success and cavity structure of the cavity nesting birds within the project, along with the R code used to build and average the models for each species. <br>
DOI: 10.6084/m9.figshare.12939992.v1
title: Data and R code associated with the publication: Secondhand Homes

description: The files "Territory Size final.csv" and "Territory size.R" are the raw data and r code associated with the homerange sizes of the golden-fronted woodpecker, along with the biomass of each order of insect collected on the territories. <br><br>The files "All Cavities.csv" and "Model Averaging.R" refer to the raw data on the nest success and cavity structure of the cavity nesting birds within the project, along with the R code used to build and average the models for each species. <br>
DOI: 10.25345/c5vf3w
title: MassIVE MSV000086118 - Gulf_War_Syndrome_UntargetedMetabolomics_Study
title: We performed an untargeted metabolomics analysis on plasma of three animal cohorts. 1) Control rats, 2) Toxins-treated rats (model of the Gulf War Syndrome), and 3) toxins-treated rats+(-)-epicatechin (Flavanol). Metabolites were extracted with ethanol:methanol (50:50) and data acquired by LC-MS/MS (Eksigent nanoLC 400 system -TripleTOF 5600, AB Sciex).
DOI: 10.6084/m9.figshare.12939998
title: Obtener mejores resultados del ejercicio

description: Entrenar es parte de la rutina diaria que debe mantener toda persona que desee ser saludable, el ejercicio forma parte del día a día de todo el que quiera mantenerse en forma y para ello es necesario tener un plan de alimentación balanceado, aunque incluso de esta forna, obtener resultados visibles puede tardarse un poco, por suerte, el usar la proteina meta nutrition puede ayudarte de manera significativa y aligerar tu trabajo
DOI: 10.6084/m9.figshare.12939998.v1
title: Obtener mejores resultados del ejercicio

description: Entrenar es parte de la rutina diaria que debe mantener toda persona que desee ser saludable, el ejercicio forma parte del día a día de todo el que quiera mantenerse en forma y para ello es necesario tener un plan de alimentación balanceado, aunque incluso de esta forna, obtener resultados visibles puede tardarse un poco, por suerte, el usar la proteina meta nutrition puede ayudarte de manera significativa y aligerar tu trabajo
DOI: 10.5281/zenodo.4023320
title: A new perspective on evaluating high-resolution urban climate simulation with urban canopy parameters

description: A new perspective on evaluating high-resolution urban climate simulation with urban canopy parameters
DOI: 10.5281/zenodo.4023319
title: A new perspective on evaluating high-resolution urban climate simulation with urban canopy parameters

description: A new perspective on evaluating high-resolution urban climate simulation with urban canopy parameters
DOI: 10.25439/rmt.12940004
title: Complete genome sequence of lactobacillus plantarum strain B21, a bacteriocin-producing strain isolated from Vietnamese fermented sausage Nem Chua

description: Lactobacillus plantarum strain B21 was isolated from Vietnamese sausage (nem chua) and demonstrated broad antimicrobial activity due to the production of bacteriocins. The link provides the complete genome sequence of this strain (3,284,260 bp).<br><br>Current interests in lactic acid bacteria (LAB), especially Lactobacillus plantarum, have increased because of their application as starter cultures in food fermentation. LAB produce a variety of compounds with antimicrobial activity, including acids, hydrogen peroxide, and bacteriocins. The antimicrobial activity of bacteriocins provide an advantage for the growth of the producer strain, creating a selective microenvironment. Probiotic strains with antimicrobial activity have unique advantages as starter cultures in food applications. The L. plantarum strain B21 was isolated from the Vietnamese fermented sausage nem chua and showed activity against a wide range of Gram-positive bacteria due to the production of bacteriocins. To date, there are only six L. plantarum strains that have been completely sequenced and annotated. The link provides the report for the gapless chromosome sequence of L. plantarum strain B21.
DOI: 10.25439/rmt.12940004.v1
title: Complete genome sequence of lactobacillus plantarum strain B21, a bacteriocin-producing strain isolated from Vietnamese fermented sausage Nem Chua

description: Lactobacillus plantarum strain B21 was isolated from Vietnamese sausage (nem chua) and demonstrated broad antimicrobial activity due to the production of bacteriocins. The link provides the complete genome sequence of this strain (3,284,260 bp).<br><br>Current interests in lactic acid bacteria (LAB), especially Lactobacillus plantarum, have increased because of their application as starter cultures in food fermentation. LAB produce a variety of compounds with antimicrobial activity, including acids, hydrogen peroxide, and bacteriocins. The antimicrobial activity of bacteriocins provide an advantage for the growth of the producer strain, creating a selective microenvironment. Probiotic strains with antimicrobial activity have unique advantages as starter cultures in food applications. The L. plantarum strain B21 was isolated from the Vietnamese fermented sausage nem chua and showed activity against a wide range of Gram-positive bacteria due to the production of bacteriocins. To date, there are only six L. plantarum strains that have been completely sequenced and annotated. The link provides the report for the gapless chromosome sequence of L. plantarum strain B21.
DOI: 10.25439/rmt.12940016.v1
title: Spoken Conversational Search Dataset

description: SCSdataset.csv is the full dataset used in Trippas, Spina, Cavedon, Joho, and Sanderson (2018). The SCSdataset now contains all utterances and has the same format, but does not include “notes”, as the ConversationalSearchDataSet.csv.The file ConversationalSearchDataSet.csv contains a set of 101 transcribed conversations to solve information needs based on backstories in Trippas, Spina, Cavedon, and Sanderson (2017a).The collection and transcription process is described in Trippas, Spina, Cavedon, and Sanderson (2017a) and Trippas, Spina, Cavedon, and Sanderson (2017b), along with an initial analysis. Further analysis of the transcriptions and observations are published in Trippas, Spina, Cavedon, Joho, and Sanderson (2018)
DOI: 10.6084/m9.figshare.11796747
title: Brownbanded bamboo shark C. punctatum genome assemby Cpunctatum_v2.1

description: This file contains genome sequences of the brownbanded bamboo shark <i>Chiloscyllium punctatum</i>, which resulted from scaffolding the existing genome assembly Cpunctatum_v1.0 with <i>in vitro</i> proximity ligation method 'Chicago' (Dovetail Genomics) using HiRise, applying the non-standard length cutoff of 300bp for input genome sequences.<br><br>
DOI: 10.25959/5f5aea5441751
title: Global Fishing Effort by Country, sector LME and FAO Area 1950 - 2015
DOI: 10.6084/m9.figshare.12939938
title: R0218_20180214a_videos

description: Rat 0218, skilled reaching data collected in Leventhal laboratory by Alexandra Bovask<br>
DOI: 10.6084/m9.figshare.12940135.v1
title: Additional file 7 of Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

description: Additional file 7: Table S6. GTEx v8 eVariants highly correlated with LA (R2 &gt; 0.9).
DOI: 10.6084/m9.figshare.12940129.v1
title: Additional file 5 of Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

description: Additional file 5: Table S4. 117AX GlobalAA and LocalAA lead eVariants for all tested genes.
DOI: 10.6084/m9.figshare.12940123
title: Additional file 3 of Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

description: Additional file 3: Table S2. Local ancestry calls for 140 GTEx individuals.
DOI: 10.6084/m9.figshare.12940123.v1
title: Additional file 3 of Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

description: Additional file 3: Table S2. Local ancestry calls for 140 GTEx individuals.
DOI: 10.6084/m9.figshare.12940126.v1
title: Additional file 4 of Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

description: Additional file 4: Table S3. Variance in residual 117AX gene expression explained by ancestry.
DOI: 10.6084/m9.figshare.12940126
title: Additional file 4 of Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

description: Additional file 4: Table S3. Variance in residual 117AX gene expression explained by ancestry.
DOI: 10.6084/m9.figshare.12940138
title: Additional file 8 of Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

description: Additional file 8: Table S7. GTEx v8 eVariants correlated with LA (R2 &gt; 0.7).
DOI: 10.6084/m9.figshare.12940129
title: Additional file 5 of Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

description: Additional file 5: Table S4. 117AX GlobalAA and LocalAA lead eVariants for all tested genes.
DOI: 10.6084/m9.figshare.12940138.v1
title: Additional file 8 of Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

description: Additional file 8: Table S7. GTEx v8 eVariants correlated with LA (R2 &gt; 0.7).
DOI: 10.6084/m9.figshare.12940120
title: Additional file 2 of Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

description: Additional file 2: Table S1. GTEx IDs for individuals in 117AX cohort.
DOI: 10.6084/m9.figshare.12940135
title: Additional file 7 of Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

description: Additional file 7: Table S6. GTEx v8 eVariants highly correlated with LA (R2 &gt; 0.9).
DOI: 10.6084/m9.figshare.12940132.v1
title: Additional file 6 of Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

description: Additional file 6: Table S5. Characteristics of GWAS used in colocalization analyses.
DOI: 10.6084/m9.figshare.12940132
title: Additional file 6 of Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

description: Additional file 6: Table S5. Characteristics of GWAS used in colocalization analyses.
DOI: 10.6084/m9.figshare.12940236
title: Additional file 1 of Spatial risk analysis for the introduction and circulation of six arboviruses in the Netherlands

description: Additional file 1: Table S1. Bird species that migrate from Africa and/or the Mediterranean area to North-western Europe during spring. Table S2. Bird species that have overlapping migratory flyways with conspecifics migrating from JEV-endemic regions in southeast Asia. Table S3. Ardeid bird species of the Netherlands. Table S4. Wetland bird species of the Netherlands. Table S5. Land cover classes of the Netherlands (LGN7) that were included as habitat for Ixodes ricinus and Hyalomma marginatum ticks. Habitat suitability ranged from 0 (not suitable) to 3 (very suitable).
DOI: 10.6084/m9.figshare.12940236.v1
title: Additional file 1 of Spatial risk analysis for the introduction and circulation of six arboviruses in the Netherlands

description: Additional file 1: Table S1. Bird species that migrate from Africa and/or the Mediterranean area to North-western Europe during spring. Table S2. Bird species that have overlapping migratory flyways with conspecifics migrating from JEV-endemic regions in southeast Asia. Table S3. Ardeid bird species of the Netherlands. Table S4. Wetland bird species of the Netherlands. Table S5. Land cover classes of the Netherlands (LGN7) that were included as habitat for Ixodes ricinus and Hyalomma marginatum ticks. Habitat suitability ranged from 0 (not suitable) to 3 (very suitable).
DOI: 10.6084/m9.figshare.12940257
title: Additional file 2 of Accuracy of clinical tests in the diagnosis of anterior cruciate ligament injury: a systematic review

description: Additional file 2: Table S2.: Excluded articles from previous systematic reviews. (XLSX 13 KB)
DOI: 10.6084/m9.figshare.12940257.v1
title: Additional file 2 of Accuracy of clinical tests in the diagnosis of anterior cruciate ligament injury: a systematic review

description: Additional file 2: Table S2.: Excluded articles from previous systematic reviews. (XLSX 13 KB)
DOI: 10.6084/m9.figshare.12940260
title: Additional file 3 of Accuracy of clinical tests in the diagnosis of anterior cruciate ligament injury: a systematic review

description: Additional file 3: Table S3.: Summary statistics for Index tests in the diagnosis of ACL injury. (XLSX 20 KB)
DOI: 10.6084/m9.figshare.12940260.v1
title: Additional file 3 of Accuracy of clinical tests in the diagnosis of anterior cruciate ligament injury: a systematic review

description: Additional file 3: Table S3.: Summary statistics for Index tests in the diagnosis of ACL injury. (XLSX 20 KB)
DOI: 10.6084/m9.figshare.12940284
title: Additional file 1 of Using genomic resources for linkage analysis in Peromyscus with an application for characterizing Dominant Spot

description: Additional File 1 Overrepresented GO terms for the list of genes containing a nonsynomomous substitution between P. maniculatus and P. polionotus.
DOI: 10.6084/m9.figshare.12940287
title: Additional file 2 of Using genomic resources for linkage analysis in Peromyscus with an application for characterizing Dominant Spot

description: Additional File 2 Underrepresented GO terms for the list of genes containing a nonsynomomous substitution between P. maniculatus and P. polionotus.
DOI: 10.6084/m9.figshare.12940287.v1
title: Additional file 2 of Using genomic resources for linkage analysis in Peromyscus with an application for characterizing Dominant Spot

description: Additional File 2 Underrepresented GO terms for the list of genes containing a nonsynomomous substitution between P. maniculatus and P. polionotus.
DOI: 10.6084/m9.figshare.12940284.v1
title: Additional file 1 of Using genomic resources for linkage analysis in Peromyscus with an application for characterizing Dominant Spot

description: Additional File 1 Overrepresented GO terms for the list of genes containing a nonsynomomous substitution between P. maniculatus and P. polionotus.
DOI: 10.6084/m9.figshare.12940317.v1
title: Additional file 1 of Metalign: efficient alignment-based metagenomic profiling via containment min hash

description: Additional file 1. Supplementary text (including computing environments, information needed for replication, and performance metrics evaluated) and supplementary figures.
DOI: 10.6084/m9.figshare.12940317
title: Additional file 1 of Metalign: efficient alignment-based metagenomic profiling via containment min hash

description: Additional file 1. Supplementary text (including computing environments, information needed for replication, and performance metrics evaluated) and supplementary figures.
DOI: 10.6084/m9.figshare.12940332
title: Additional file 1 of Evaluating plant residue decline data with KinGUII and TREC: results from case studies involving also non-SFO kinetic models

description: Additional file 1: KinGUII input.zip.
DOI: 10.6084/m9.figshare.12940332.v1
title: Additional file 1 of Evaluating plant residue decline data with KinGUII and TREC: results from case studies involving also non-SFO kinetic models

description: Additional file 1: KinGUII input.zip.
DOI: 10.6084/m9.figshare.12940335
title: Additional file 2 of Evaluating plant residue decline data with KinGUII and TREC: results from case studies involving also non-SFO kinetic models

description: Additional file 2: KinGUII output.zip.
DOI: 10.6084/m9.figshare.12940338
title: Additional file 3 of Evaluating plant residue decline data with KinGUII and TREC: results from case studies involving also non-SFO kinetic models

description: Additional file 3: TREC files.zip.
DOI: 10.6084/m9.figshare.12940335.v1
title: Additional file 2 of Evaluating plant residue decline data with KinGUII and TREC: results from case studies involving also non-SFO kinetic models

description: Additional file 2: KinGUII output.zip.
DOI: 10.6084/m9.figshare.12940338.v1
title: Additional file 3 of Evaluating plant residue decline data with KinGUII and TREC: results from case studies involving also non-SFO kinetic models

description: Additional file 3: TREC files.zip.