cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13020/cz36-av89
title: Cloquet Forestry Center arboretum larch individual tree diameter and height 2016 

description: During August 2 through September 20, 2016 Kyle Gill, University of Minnesota Cloquet Forestry Center (CFC) Manager and Research Coordinator, led an effort to sample individual tree size on 139 larch trees of six different genetic and geographic sources found in the CFC arboretum; genetic or geographic source available upon request. 

description: During August 2 through September 20, 2016 Kyle Gill, University of Minnesota Cloquet Forestry Center (CFC) Manager and Research Coordinator, led an effort to sample individual tree size on larch species found in the CFC arboretum. Five different larch species were sampled, and one species had two varieties: Larix laricina, Larix gmelini, Larix dahurica, Larix gmelini var. olgensis, Larix siberica, and Larix occidentalis.

The value of these data are that they are a snapshot of individual tree sizes of 139 individuals from six different larch species established using the same protocols that have been left to grow in their neighborhood for around 85 years.

These data are being released now because they have been requested by a team of researchers in Maine, United States, who are compiling and analyzing individual tree  from across the Great Lakes region.
description: Data rows are for each individual tree. See readme.txt for variables names and description. 
A general CFC Arboretum description from the CFC project record #1913_05:
"In 1922 a[n]... attempt was made to establish an arboretum.... The area was completely cleared and the soil plowed. Trees were planted in blocks of fifty using a six foot spacing. A twelve foot space was left between each block. The trees were cultivated as long as it was possible to drive a horse between the rows. Further plantings were made in 1925, 1928, 1929, 1930, and 1933; altogether sixty-eight species were planted in the arboretum. All of these gave promise of being hardy after growing from two to four years in the nursery."
DOI: 10.13020/126g-6t56
title: Supporting data for The hidden value of trees: Quantifying the ecosystem services of tree lineages and their major threats across the contiguous US

description: Trees provide critical contributions to human well-being. They sequester and store greenhouse gasses, filter air pollutants, and provide wood, food, and other products, among other benefits. These benefits are threatened by climate change, fires, pests and pathogens.  We show that the value of ecosystem services generated by US trees in forests, orchards, and plantations across five key services for which we had adequate data is $114 billion per annum (low: $85 B; high: $137 B; 2010 USD). The non-market ‘hidden’ ecosystem services of trees from  carbon storage (51% of total value) and air pollution removal (37%) far exceed their commercial value from wood products and food crops (12%). The most valuable US tree species and lineages are also among those most threatened by known pests and pathogens, and the species most valuable for carbon storage are most at risk from increasing fire threat. Different species and lineages in different regions contribute to carbon storage and air pollution removal, which is distinct from tree crops that are often provided by the same species and lineages in different regions.
description: To quantify and map the current value of the flow of ecosystem services from US trees, and the potential threats they face, we combine macroevolutionary and economic valuation approaches using spatially explicit information about tree species and lineages.
DOI: 10.13020/yngk-mh80
title: Minnesota Synagogues and Jewish Cemeteries, 1856 to 2020

description: This project, created by the archivist of the Upper Midwest Jewish Archives in the University of Minnesota Libraries, includes the location information of historic Minnesota synagogues and cemeteries from 1856 to 2020 in an effort to determine where synagogues were located in Minnesota over the years and how many were active at any given time.
description: Two files are included -- one for synagogues and one for cemeteries. The synagogue file includes the dates that the synagogue was at that location. Cemeteries do not have date ranges because they do not move over time in the same way as synagogues do. Cemeteries were included because they too tell a story of where Jewish community members were living.
DOI: 10.13020/2gcq-pt83
title: Carp Edema Virus Host Range Study in Lake Swartout and Outbreaks in four other lakes

description: Mass mortality events of common carp (Cyprinus carpio, carp) associated with carp edema virus (CEV) alone or in coinfections with koi herpesvirus (KHV), is an emerging issue. Despite recent outbreaks of CEV in wild carp populations, the host range of North American species has not been well studied. To that end, we intensively sampled carp (n = 106) and co-habiting native fish species (n = 5 species; n = 156 total fish) from a CEV-suspect mass-mortality event of carp in a small Minnesota lake (Lake Swartout). Additionally, fecal and regurgitant samples (n = 73 each) from double-crested cormorants (Phalacrocorax auritus, DCCO) were sampled to test the potential of DCCO to act as a vector for virus transmission. CEV was confirmed to be widespread in the Lake Swartout carp population during the outbreak with high viral loads and histological confirmation, suggesting that CEV was the cause of the mortality event. There were no detections of CEV in any native fish species; however, DCCO regurgitant and fecal samples were positive for CEV DNA. In addition, three CEV-positive and one CEV+KHV-positive mortality events were confirmed with no observed mortality or morbidity of non-carp species in other lakes. This study provides evidence that CEV infection and disease may be specific to carp during mortality events with mixed-species populations, identifies DCCO as a potential vector for CEV, and further expands the known range of CEV, as well as coinfections with KHV, in North America.
description: This data set includes qPCR data for several species of fish from a lake with an outbreak of CEV in 2019 as well as qPCR data from carp from the same lake and from four other lakes.
DOI: 10.13020/d6001s
title: 2003 Rock Properties Database: Density, Magnetic Susceptibility, and Natural Remanent Magnetization of Rocks in Minnesota

description: Geologic interpretation of gravity and magnetic anomaly data in a given area is greatly enhanced if density, magnetic susceptibility and natural remanent magnetization (NRM) data are available for representative rock-types. Along with outcrop and drill-hole information, rock property data help relate geophysical anomaly signatures to probable rock types, and provide constraints on the use of anomaly data as a tool for mapping and for modeling geology at depth.

Most of the density and magnetization data contained in this database were acquired over the last two decades by the Minnesota Geological Survey (MGS) as part of an on-going program to collect rock properties. A group of Paleozoic samples were collected from Iowa and included in the database because they provide a representative suite of data for rocks present, but not widely exposed in Minnesota. Additional data were derived from studies by the U. S. Geological Survey (Bath, 1962; Beck, 1970; Beck and Lindsley, 1969; Books, 1972; Jahren, 1965), The University of Minnesota (Bleifuss, 1952, Mooney and Bleifuss, 1952), The University of Western Ontario (Palmer, 1970), and the Geological Survey of Canada (Dubois, 1962).
description: Every reasonable effort has been made to ensure the accuracy of the factual data on which this compilation is based; however, the Minnesota Geological Survey does not warrant or guarantee that there are no errors. Users may wish to verify critical information; sources include both the references listed here and information on file at the offices of the Minnesota Geological Survey in St. Paul. No claim is made that the data as shown are rigorously correct, however, and it should not be used to guide engineering-scale decisions without site-specific verification.
DOI: 10.13020/d6nc7r
title: Risk prioritization of pork supply movements during an FMD outbreak in the US - Data and Materials

description: In the event of a Foot and Mouth Disease (FMD) outbreak in the U.S., local, state, and federal authorities will implement a foreign animal disease emergency response plan restricting the pork supply chain movements and likely disrupting the continuity of the swine industry business. To minimize disruptions of the food supply while providing an effective response in an outbreak, it is necessary to ensure eradication strategies and risk management efforts are focused towards the most critical movements; those that are most necessary for business continuity and most likely to contribute to disease spread. This study recruited experts from production, harvest, retail, and allied pork industries to assess 30 common pork supply movements for their industry criticality. Movements spanned five categories: equipment, live animal production, genetics, harvest, and people. Experts were recruited via email to the American Association of Swine Veterinarians (AASV) mailing list and their assessments were collected via an online survey. For each of the thirty movements, experts were asked to rate the risk of FMD spread using a four-point scale, from no or slight risk of disease spread to high risk of disease spread. Then they were asked to estimate the time at which the restriction of each movement during an outbreak would have a significant negative consequence on business (e.g., high likelihood of bankruptcy, negative impact on animal welfare). These two facets of each movement were analyzed to provide an initial guide for prioritization of risk management efforts and resources to be better prepared in the event of a FMD outbreak in the US.
description: The Data.csv file contains the raw survey responses (location information collected by Qualtrics has been removed). Information about the variables and value labels can be found in the DataDictionary.txt file. The data can be read into the Analysis_Code.R file to perform analysis described in the paper and to create a static version of the Movements.html graph. Survey.pdf contains the survey questions with relevant skip and display logic.
DOI: 10.13020/bgg5-kk86
title: Distribution Maps and Models for 13 Invasive Plants in Minnesota

description: This dataset consists of raster (.tif) and map (.png) files for 13 invasive plants in Minnesota. Species included consist of: common buckthorn, glossy buckthorn, multiflora rose, garlic mustard, Canada thistle, common tansy, leafy spurge, spotted knapweed, wild parsnip, purple loosestrife, Japanese knotweed, narrowleaf bittercress, and plumeless thistle. The rasters (.tif files) included here consist of the output of species distribution modeling (SDM) conducted for each species; these files depict the mean cross-model and cross-assumption distribution estimates for each species, on a scale of 0 to 1. Values near 0 indicate low likelihood of finding the species there, or low habitat suitability, and values near 1 represent a high likelihood of finding the species. The maps (.png files) included here depict the same information, but in a static non-GIS compatible format.
DOI: 10.13020/hzkr-n196
title: Data from: Tests in a semi-natural environment suggest that bait and switch strategy could be used to control invasive Common Carp

description: Common Carp (Cyprinus carpio Linnaeus, 1758), is a highly invasive species that has had profound effects on biodiversity and ecosystem services. Many Carp management methods have been applied including physical removal, pesticide treatments of whole lakes, and water drawdowns. Herein, we tested key elements of a potential “bait and switch” approach in which corn could be used to induce feeding aggregations of Carp and then switched for corn pellets with a pesticide Antimycin-A (ANT-A) to selectively target the Carp. First, laboratory experiments were used to determine if addition of lethal concentrations of ANT-A to corn pellets deterred Carp from eating corn-based food pellets. Second, a pond experiment tested if a corn-based bait containing ANT-A functioned as a species-specific Carp management tool in a semi-natural environment with three common native fishes: White Sucker (Catostomus commersonii Lacepède, 1803), Yellow Perch (Perca flavescens, Mitchill, 1814), and Bluegill (Lepomis macrochirus Rafinesque, 1819). The use of baited sites by Carp and native species was monitored using passive integrated transponder (PIT) tags. Mortality of each species and presence of corn in their digestive tracts was also monitored.
description: There are four files: 1) PIT_tagged_FISH contains unique PIT tag for every fish, plus length, species, pond, date of mortality, 2) Raw_detections contains all fish detected during study, 3) Summarized_mortalities contains summaries of the fish mortalities by pond and species before and after experimental treatment, and 4) R_code contains a summary of and code for the R analysis used.
DOI: 10.13020/d6pq30
title: Supplementary Data for 'How Important Are Data Curation Activities to Researchers? Gaps and Opportunities for Academic Libraries'

description: Building on past user-needs assessments performed via survey and focus groups, the authors sought direct input from researchers on the importance of and utilization of specific data curation activities. Methods: Between October 21, 2016, and November 18, 2016, the study team held focus groups with 91 participants at six different academic institutions to determine which data curation activities were most important to researchers and which activities were happening for their data, and to understand how satisfied they were with the results. Supplementary data tables expand on the selected data presented in the paper. The two survey protocols, card rating exercise template and worksheet template, were used in our engagement sessions and are presented here for reuse.
description: Data were collected from the two protocols (ratings and worksheet answers) and analyzed by institution. Blanks indicate that no data was collected at that institution for that data curation activity.
DOI: 10.13020/fgqp-nh70
title:  Data and code for "Optimizing early detection strategies: defining the effective attraction radius of attractants for emerald ash borer" 

description: From the publication:
1. Adult emerald ash borers are attracted to green prism traps baited with the ash host volatile (3Z)-hexenol and the sex pheromone of emerald ash borer (3Z)-dodecen-12-olide [(3Z)-lactone]. Quantifying the heretofore unknown range of attraction of such traps would help optimize deployment strategies for early detection.

2. Examining trap captures of traps deployed in pairs at variable distances offers insight into the range of attraction. Recent work has shown the range of attraction can be estimated as half the intertrap distance at which trap catch begins to decrease, which should occur when proximate traps overlap their respective attractive ranges.

3. We illustrate estimation of the traps' attractive range for emerald ash borer using ninety-eight baited green prism traps deployed in pairs, one trap per tree, in an urban park in Saint Paul, Minnesota, USA in summer 2020.

4. We estimate attractive range by fitting a logistic model to trap catch data using Bayesian inferential methods and describe advantages thereof.

5. The attractive range of these baited traps was estimated to be between 16 -- 73m, with a median of 28m. We recommend that green prism traps baited with these semiochemicals be placed 25 - 35m apart near high-risk entry points.
description: This zip folder contains the code and data necessary to reproduce the analyses from the associated paper.
DOI: 10.13020/d6p67b
title: Software, Data & Models used in "Identifying Animal Species in Camera Trap Images using Deep Learning and Citizen Science"

description: This dataset provides the software, the models, and other data used in "Identifying Animal Species in Camera Trap Images using Deep
Learning and Citizen Science". This dataset contains the software to train convolutional neural networks, as well as all models trained for the study and code to apply them on new images. Additionally, data defining the conducted experiments are provided to ensure reproducibility.
DOI: 10.13020/d6vm24
title: Data Supporting 'When things don’t add up: quantifying impacts of multiple stressors from individual metabolism to ecosystem processing'

description: These data were produced with an individual-based model of amphipod populations exposed to combinations of hypothetical stressors. Stressors targeted feeding, reproduction, maintenance and growth processes in individual amphipods. We measured body sizes and cumulative reproduction in each individual in the simulation, population abundance and biomass and, finally, amount of unprocessed leaf litter which was consumed by the amphipods. Files contain 20 year time series of those endpoints in different stressor combinations; each combinations was replicated 50 times.
DOI: 10.13020/d69g69
title: Changes in the Porcine Intestinal Microbiome in Response to Infection with Salmonella Enterica and Lawsonia Intracellularis

description: Salmonella enterica is a leading cause of food borne illness. Recent studies have shown that S. enterica is a pathogen capable of causing alterations to the composition of the intestinal microbiome. A recent prospective cross-sectional study of French pork production farms found a statistically significant association between Lawsonia intracellularis and carriage of S. enterica. In the current study the composition of the gut microbiome was determined in pigs challenged with S. enterica serovar Typhimurium and or L. intracellularis and compared to non-challenged control pigs. Principal coordinate analysis demonstrated that there was a disruption in the composition of the gut microbiome in the colon and cecum of pigs challenged with either pathogen. The compositions of the microbiomes of challenged pigs were similar to each other but differed from the non-challenged controls. There also were statistically significant increases in Anaerobacter, Barnesiella, Pediococcus, Sporacetigenium, Turicibacter, Catenibacterium, Prevotella, Pseudobutyrivibrio, and Xylanibacter in the challenged pigs. To determine if these changes were specific to experimentally challenged pigs, we determined the compositions of the fecal microbiomes of naturally infected pigs that were carriers of S. enterica. Pigs that were frequent shedders of S. enterica were shown to have similar fecal microbiomes compared to non-shedders or pigs that shed S. enterica infrequently. In a comparison of the differentially abundant bacteria in the naturally infected pigs compared to experimentally challenged pigs, 9 genera were differentially abundant and each exhibited the same increase or decrease in abundance between the two groups. Thus, there were similar changes in the GI microbiome associated with carriage of S. enterica regardless of whether the pigs were experimentally challenged with S. enterica or acquired it naturally.
description: The ZIP file includes 51 sequence files (FASTA format) and 1 Excel file describing the species, age, sampled tissue, treatment condition, and sample name corresponding to the different file names. The Excel file is converted to a csv for archival purposes. The Readme.txt file describes the context of how the data was created and any codes used in the spreadsheet.
DOI: 10.13020/hwkm-ev34
title: Phenotypic and genotypic data of barley Gen10 population to study a pericentromeric region on chromosome 6H

description: The phenotypic and genotypic data of the Gen10 population used to study a genetic region on chromosome 6H of barley associated with multiple traits. Gen10 is a population of ~100 Chevron-derived recombinant near-isogenic lines that contained the Fusarisum head blight/kernel discoloration resistance locus from Chevron, a landrace, in the genetic background of Lacey, an elite malting barley variety.
description: One phenotypic data file consists of multiple trials (one trial per sheet) and each trial with one or more phenotypic traits such as Fusarium head blight severity score and yield; one genotypic data file consists of genotypic Illumina 50K chip data of 101 Gen10 lines across chromosome 6H as well as that of the parents Gen2-129 and Lacey sequenced in fall 2018, also included are the parent genotypes in summer 2018 sequencing run which were used to impute the bad parent genotypes in the fall 2018 sequencing run.
DOI: 10.13020/ewac-3896
title: Plant phenology and floral anatomy data observed from 2017 to 2020 on woody plants growing in Minnesota

description: These data were collected for a project examining floral water loss and floral hydration in woody plants that flower before producing leaves. Floral phenology, bud mass, and surface area data was collected from at least 6 individuals of five species. Phenology and mass data were used to determine water uptake throughout bud development. Surface area data was used to standardize gas exchange measurements in a related dataset.
description: There are three CSV files and one readme file.
DOI: 10.13020/5bna-8325
title: Cloquet Forestry Center automated weather station data for calendar year 2019 

description: Weather station data for calendar year 2019 from the University of Minnesota Cloquet Forestry Center automated weather station as collected by a Campbell Scientific CR1000 datalogger and various sensors. The automated weather station serves as a higher resolution dataset and backup for the manually-collected daily weather observations that are recorded and submitted to the National Weather Service. It also includes data from sensors not required by the NWS. Data for this dataset are collected by each sensor every 20 seconds and aggregated and recorded at the CR1000 in five minute intervals. They were downloaded and appended to the growing dataset manually by CFC staff weekly. The Direct Weather Download Protocol by CFC staff is followed to ensure datalogger data quality control steps are in place during manual data download, transfer, and archiving.
description: This dataset includes the raw five-minute interval data for ambient air temperature, ambient relative humidity, total precipitation, snow depth, solar radiation, long wave radiation, barometric pressure, soil temperature at four and eight inches below grade, and windspeed at 4 feet above and an evaporation tank water depth. See metadata for more information.
DOI: 10.13020/hbr0-9z50
title: Silver-ableC: a Silver extension for writing ableC specifications

description: Silver-ableC is an extension to the Silver attribute grammar system for writing ableC language specifications.  It allows language developers to specify C language constructs using the concrete syntax of C instead of the more verbose and inconvenient abstract syntax.
description: The Silver source files for the Silver-ableC extension. Both files contain the same content in different formats