cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18351832
title: Late blight (Phytophthora infestans) infection severity and plant coordinates in North Carolina

description: The data are tables for the years 2022 and 2023. Each has the same columns. The "mean severity" is the severity of the rated infection averaged for all plants in a 3 x 3 m cell. The "treatm": 1 = treated (sprayed with chemical control) and 0 = control (no spray). Cell is the cell number in the Planet imagery raster. X is longitude in UTM 17 N (EPSG: 26917). Y is latitude in UTM 17 N (EPSG: 26917).
DOI: 10.5281/zenodo.18351833
title: Late blight (Phytophthora infestans) infection severity and plant coordinates in North Carolina

description: The data are tables for the years 2022 and 2023. Each has the same columns. The "mean severity" is the severity of the rated infection averaged for all plants in a 3 x 3 m cell. The "treatm": 1 = treated (sprayed with chemical control) and 0 = control (no spray). Cell is the cell number in the Planet imagery raster. X is longitude in UTM 17 N (EPSG: 26917). Y is latitude in UTM 17 N (EPSG: 26917).
DOI: 10.15468/dl.9u3jf7
title: Occurrence Download

description: A dataset containing 17836 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vespa velutina",
 "Country is Germany",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 17836 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007459-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15482/usda.adc/31073596
title: Data from: Genetic variations and accelerated growth at low temperatures in a <i>Listeria monocytogenes </i>isolate

description: <i>Listeria monocytogenes </i>contamination of fresh-cut produce poses a threat to consumers due to its high mortality rate. Because it is widespread in the environment, as well as able to grow and survive in harsh conditions, such as low temperatures, it is difficult to control. A strain of <i>L. monocytogenes</i>, L008, with significantly faster growth than other strains was identified in our laboratory during experiments with fresh-cut produce. The L008 strain had a significantly shorter lag phase and reached maximum spectrophotometric absorbance (optical density) faster than three other <i>L. monocytogenes </i>strains during growth curve studies at 4 and 8°C. The lag phase was also shorter, when compared with two of the three strains at 12°C. A genetic comparison between L008 and the other three strains identified missense mutations in the <i>fapR, mngB, pfkB, </i>and <i>uvrC</i> genes of L008 that may account for the faster growth. These genes are involved in metabolism, cell membrane maintenance, and stress tolerance, which may allow L008 to adapt to lower temperatures better than the other strains. Accelerated growth at low temperatures may elevate the risk associated with this isolate and other <i>L. monocytogenes </i>strains with similar genetic variants.
DOI: 10.15482/usda.adc/31073596.v1
title: Data from: Genetic variations and accelerated growth at low temperatures in a <i>Listeria monocytogenes </i>isolate

description: <i>Listeria monocytogenes </i>contamination of fresh-cut produce poses a threat to consumers due to its high mortality rate. Because it is widespread in the environment, as well as able to grow and survive in harsh conditions, such as low temperatures, it is difficult to control. A strain of <i>L. monocytogenes</i>, L008, with significantly faster growth than other strains was identified in our laboratory during experiments with fresh-cut produce. The L008 strain had a significantly shorter lag phase and reached maximum spectrophotometric absorbance (optical density) faster than three other <i>L. monocytogenes </i>strains during growth curve studies at 4 and 8°C. The lag phase was also shorter, when compared with two of the three strains at 12°C. A genetic comparison between L008 and the other three strains identified missense mutations in the <i>fapR, mngB, pfkB, </i>and <i>uvrC</i> genes of L008 that may account for the faster growth. These genes are involved in metabolism, cell membrane maintenance, and stress tolerance, which may allow L008 to adapt to lower temperatures better than the other strains. Accelerated growth at low temperatures may elevate the risk associated with this isolate and other <i>L. monocytogenes </i>strains with similar genetic variants.
DOI: 10.15468/dl.vzvy98
title: Occurrence Download

description: A dataset containing 5838 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aethusa cynapium",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 5838 records from 174 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007460-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.urdx8b
title: Occurrence Download

description: A dataset containing 1566 records in GBIF matching the query:
SELECT
 '182' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 0.0
 AND decimalLatitude &lt;= 4.045127286108716
 AND decimalLongitude &gt;= 109.75551534479142
 AND decimalLongitude &lt;= 114.92109815384232
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 1566 records were derived from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007445-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.whgww7
title: Occurrence Download

description: A dataset containing 114456 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Loricariidae",
 "HasCoordinate is true"
 ]
}

 The dataset includes 114456 records from 496 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007398-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6078/d11q3z
title: Vector bionomics and vectorial capacity as emergent properties of mosquito behaviors and ecology

description: Mosquitoes are important vectors for pathogens that infect humans and
 other vertebrate animals. Some aspects of adult mosquito behavior and
 mosquito ecology play an important role in determining the capacity of
 vector populations to transmit pathogens. Here, we re-examine factors
 affecting the transmission of pathogens by mosquitoes using a new
 approach. Unlike most previous models, this framework considers the
 behavioral states and state transitions of adult mosquitoes through a
 sequence of activity bouts. We developed a new framework for
 individual-based simulation models called MBITES (Mosquito Bout-based and
 Individual-based Transmission Ecology Simulator). In MBITES, it is
 possible to build models that simulate the behavior and ecology of adult
 mosquitoes in exquisite detail on complex resource landscapes generated by
 spatial point processes. We also developed an ordinary differential
 equation model which is the Kolmogorov forward equations for models
 developed in MBITES under a specific set of simplifying assumptions. While
 mosquito infection and pathogen development are one possible part of a
 mosquito's state, that is not our main focus. Using extensive
 simulation using some models developed in MBITES, we show that vectorial
 capacity can be understood as an emergent property of simple behavioral
 algorithms interacting with complex resource landscapes, and that relative
 density or sparsity of resources and the need to search can have profound
 consequences for mosquito populations' capacity to transmit
 pathogens.
description: This dataset includes human and mosquito output (as .json files)
 produced by the computational experiments described in the main text of
 the article "Vector bionomics and vectorial capacity as
 emergentproperties of mosquito behaviors and ecology". These files
 can be used with the code provided at the GitHub
 repository https://github.com/dd-harp/MBITES/tree/v1.0 to reproduce the
 results and figured presented in the text.
DOI: 10.5061/dryad.m0cfxpp0s
title: The molecular diversity of phagotrophic Euglenids examined using single-cell methods

description: Euglenids are a diverse group of euglenozoan flagellates that includes
 phototrophs, osmotrophs, andphagotrophs. Despite making up most of the
 phylogenetic diversity of euglenids, phagotrophs remain understudied, and
 recent work has focused on ‘deep-branching’ groups. Spirocuta is the large
 clade encompassing all flexible euglenids including the phototroph and
 primary osmotroph clades, plus various phagotrophs. Understanding the
 phylogenetic diversity of phagotrophic spirocutes is crucial for tracing
 euglenid evolution, including how phototrophs arose.We used single-cell
 approaches to greatly increase sampling of SSU rDNA for phagotrophic
 euglenids, particularly spirocutes, including the first sequences from
 Urceolus, Jenningsia, Chasmostoma, and Sphenomonas, and expanded coverage
 for Dinema and Heteronema sensu lato, amongst others. Urceolus
 monophyly is unconfirmed. Organisms referred to Jenningsia form two
 distinct clades. Heteronema vittatum and similar cells branch separately
 from Heteronema (c.f.) globuliferum and Teloprocta/Heteronema scaphurum,
 while Dinema appears as 2–3 clades. Sphenomonas is monophyletic and the
 deepest branch within Petalomonadida. The census of genera markedly
 underestimates the phylogenetic diversity of phagotrophs, but taxonomic
 restraint is necessary when sequences are not available from type species
 or reasonable surrogates. SSU rDNA phylogenies do not resolve most deep
 relationships within Spirocuta, but identify units of diversity to sample
 in future multigene analyses.
description: Manual isolation of single cells of phagotrophic euglenids, with
 micrographs and video. Cells were subjected to multiple displacement
 amplification (MDA) and had their SSU rRNA sequenced. Resulting SSU rRNA
 sequences were used to reconstruct a comprehensive molecular phylogeny of
 euglenids.
description: Raw image files are in jpeg or TIFF formats, videos are in
 mp4-format (H.264 codec), alignment files are in fasta-format, and
 treefiles are in NEWICK-format.
DOI: 10.5061/dryad.tht76hdwc
title: Phylogenetics of Hawaiian Diplazium (Athyriaceae: Polypodiales)

description: Hawaii is home to four species in the fern genus Diplazium: Diplazium
 arnottii, D. esculentum, D. molokaiense, and D. sandwichianum. Three are
 endemic to the Hawaiian Islands, and one is introduced and naturalized (D.
 esculentum). They vary in frequency, from very abundant (D. sandwichianum)
 to rare and critically endangered (D. molokaiense). Prior to this work,
 the phylogenetic relationships of only D. esculentum had been estimated
 due to lack of information available about these species. In this study,
 we inferred phylogenetic relationships of the Hawaiian Diplazium based on
 six chloroplast regions – atpA, atpB, matK, rbcL, rps4+rps4–trnS IGS, and
 trnL intron+trnL­–trnF IGS. We downloaded these plastid markers from
 GenBank for an additional 84 Diplazium species and two Athyrium species,
 and used the latter as outgroups. The resulting phylogeny inferred from
 combined data indicated that D. arnottii and D. sandwichianum are sister
 taxa, likely with origins in the paleotropics. Morphologically, the two
 species can be distinguished by leaf dissection and lengths of sori.
 Diplazium molokaiense is sister to the Asian D. heterocarpum (among our
 sampled taxa). Diplazium molokaiense is distinguished from other species
 in the clade by its large sori and longer fronds. Our results reveal the
 phylogenetic placements of three Diplazium species and corroborate the
 placement of a fourth species. This knowledge clarifies species’ statuses,
 which will aid in conservation of these threatened or endangered species.
description: six chloroplast regions – <i>atpA</i>,
 <i>atpB</i>, <i>matK</i>, <i>rbcL</i>,
 <i>rps4</i>+<i>rps4</i>–<i>trnS</i>
 IGS, and <i>trnL</i>
 intron+<i>trnL</i>­–<i>trnF</i> IGS
 Downloaded these regions for 84 <i>Diplazium
 </i>species and two <i>Athyrium </i>species from
 GenBank Sanger sequenced many of these regions from the
 four Hawaiian <em>Diplazium</em> - <i>Diplazium
 arnottii, D. esculentum, D. molokaiense</i>, and <i>D.
 sandwichianum</i>
DOI: 10.5061/dryad.79cnp5hs1
title: Wind Tunnel Measurements of Aerodynamic Entrainment Rate of Particles

description: This dataset is related to a wind tunnel experiment of aerodynamic
 entrainment rate of particles. Wind profiles are measured
 by pitot tube, for calibrating surface shear stress
 measured by Irwin sensors. Aerodynamic entrainment rate is measured
 through the mass difference weighting before and after the erosion event.
 Each case is repeated three times to find the
 average value and the error. The experimental setup is showed in
 figure 1.
DOI: 10.5061/dryad.gqnk98sj8
title: Island biogeography of soil bacteria and fungi: similar patterns, but different mechanisms

description: Microbes, similar to plants and animals, exhibit biogeographic patterns.
 However, in contrast with the considerable knowledge on the island
 biogeography of higher organisms, we know little about the distribution of
 microorganisms within and among islands. Here, we explored insular soil
 bacterial and fungal biogeography and underlying mechanisms, using soil
 microbiota from a group of land-bridge islands as a model system. Similar
 to island species-area relationships observed for many macroorganisms,
 both island-scale bacterial and fungal diversity increased with island
 area; neither diversity, however, was affected by island isolation. By
 contrast, bacterial and fungal communities exhibited strikingly different
 assembly patterns within islands. The loss of bacterial diversity on
 smaller islands was driven primarily by the systematic decline of
 diversity within samples, whereas the loss of fungal diversity on smaller
 islands was driven primarily by the homogenization of community
 composition among samples. Lower soil moisture limited within-sample
 bacterial diversity, whereas smaller spatial distances among samples
 restricted among-sample fungal diversity, on smaller islands. These
 results indicate that among-island differences in habitat quality generate
 the bacterial island species-area relationship, whereas within-island
 dispersal limitation generates the fungal island species-area
 relationship. Together, our study suggests that different mechanisms
 underlie similar island biogeography patterns of soil bacteria and fungi.
DOI: 10.5061/dryad.1g1jwstrz
title: Data from: Is foraging innovation lost following colonisation of a less variable environment? a case study in surface- vs. cave-dwelling Asellus aquaticus

description: Behavioural innovation is a key process for successful colonisation of new
 habitat types. However, it is costly due to the necessary cognitive and
 neural demands and typically connected to ecological generalism.
 Therefore, loss of behavioural innovativeness is predicted following
 colonisation of new, simple and invariable environments. We tested this
 prediction by studying foraging innovativeness in the freshwater isopod
 Asellus aquaticus. We sampled its populations along the route of
 colonising a thermokarstic water-filled cave (simple, stable habitat with
 only bacterial mats as food) from surface habitats (variable environment,
 wide variety of food). The studied cave population separated from the
 surface populations at least 60 000 years ago. Animals were
 tested both with familiar and novel food types (cave food: bacterial mats;
 surface food: decaying leaves). Irrespective of food type, cave
 individuals were more likely to feed than surface individuals. Further,
 animals from all populations fed longer on leaves than on bacteria, even
 though leaves were novel for the cave animals. Our results support that
 cave A. aquaticus did not lose the ability to use the ancestral (surface)
 food type after adapting to a simple, stable and highly specialised
 habitat.
DOI: 10.5061/dryad.h18931zh1
title: Moisture alone is sufficient to impart strength but not weathering resistance to termite mound soil

description: Soil is used for construction of structures by many animals, at times
 admixed with endogenous secretions. These additives, along with soil
 components, are suggested to have a role in biocementation. However, the
 relative contribution of endogenous and exogenous materials to soil
 strength has not been adequately established. Termite mounds are earthen
 structures with exceptional strength and durability including weathering
 resistance to wind and rain. With in-situ and lab-based experiments we
 demonstrate that the fungus-farming termite Odontotermes obesus which
 builds soil nest mounds, when given a choice, prefers soil close to its
 liquid limit for construction. At this moisture content, the soil–water
 mixture alone even in the absence of termite handling undergoes
 self-weight consolidation and upon drying attains a monolithic, densely
 packed structure with compressive strength comparable to the in-situ
 strength of the mound soil; however, the soil–water mixture alone has
 lower resistance to water erosion than the in-situ mound samples
 suggesting that termite secretions impart weathering resistance and
 thereby long-term stability to the mound. Therefore, weathering resistance
 and compressive strength are conferred by different aspects of termite
 soil manipulation. Our work provides novel insights into termite mound
 construction and strength correlates for earthen structures built by
 animals.
DOI: 10.5061/dryad.gf1vhhmkj
title: Avian MHC copy number variation is associated with helminth richness

description: Genes of the Major Histocompatibility Complex (MHC) play a key role in the
 adaptive immunity of vertebrates, as they encode receptors responsible for
 recognition of antigens. Evolutionary history of the MHC proceeded through
 numerous gene duplications, which increases the spectrum of pathogens
 recognized by individuals. Although pathogen-mediated selection is
 believed to be a primary driver of MHC expansion over evolutionary times,
 empirical evidence for this association is virtually lacking. Here, we
 used an extensive dataset on MHC class II copy number variation in
 non-passerine birds to test for an evolutionary correlation with helminth
 parasite richness. As expected, our phylogenetically-informed modelling
 revealed a positive association between MHC copy number and total helminth
 richness, even after controlling for a broad spectrum of ecological and
 life-history traits. Thus, total helminth richness appears to be the most
 important correlate of MHC copy number, supporting a leading role of
 pathogen-mediated selection in the evolution of MHC in birds. Our results
 provide some of the first, although correlative, evidence linking
 parasitism to inter-specific variation in MHC copy number among birds.
DOI: 10.82294/dvngidtuv
title: Observaciones semiestructuradas. Territorio: Cundinamarca. Eje meduñar: Corporeidad. Sector: Cultura. Años: 2025

description: La corporeidad es la unidad compleja e indivisible del ser humano, entendida como “cuerpo vivido”, donde convergen las dimensiones física, sensorial, emocional, social, cognitiva y estética. En la educación artística, la corporeidad es la forma en que las y los estudiantes sienten, están y son en el mundo, poniendo en acción su subjetividad, emociones, pensamiento y creatividad a través del cuerpo en interacción con el arte, los otros y el entorno. La corporeidad se hace visible y evaluable mediante la observación de cómo el cuerpo es vehículo de expresión, experiencia sensible, relación e integración reflexiva, y transformación personal y colectiva. (Águila Soto, C., & López Vargas, J. J. (2019); Guillén, E. C. (2021); Peláez-Loaiza, L., Tobón-Vásquez, G., & Izaguirre-Ruiz, J. (2024))
DOI: 10.5061/dryad.djh9w0vx0
title: Genotypes and their interaction effects on reproduction and mating-induced immune activation in Drosophila melanogaster

description: Mating causes considerable alterations in female physiology and behaviour,
 and immune gene expression, partly due to proteins transferred from males
 to females during copulation. The magnitude of these phenotypic changes
 could be driven by the genotypes of males and females, as well as their
 interaction. To test this, we carried out a series of genotype by genotype
 (G × G) experiments using Drosophila melanogaster populations from two
 distant geographical locations. We expected lines to have diverged in male
 reproductive traits and females to differ in their responses to these
 traits. We examined female physiological and behavioural post-mating
 responses to male mating traits, i.e. behaviour and ejaculate composition,
 in the short- to mid-term (48 hours) following mating. We then explored
 whether a sexually transferred molecule, sex peptide (SP), is the
 mechanism behind our observed female post-mating responses. Our results
 show that the genotypes of both sexes as well as the interaction between
 male and female genotype affect mating and post-mating reproductive
 traits. Immune gene expression of three candidate genes increased in
 response to mating, and was genotype-dependent but did not show a G × G
 signature. Males showed genotype-dependent SP expression in the seven days
 following eclosion, but female genotypes showed no differential
 sensitivity to the receipt of SP. The two genotypes demonstrated clear
 divergence in physiological traits in short- to mid-term responses to
 mating, but the longer-term consequences of these initial dynamics remain
 to be uncovered.
DOI: 10.5281/zenodo.18197298
title: Two-component anomalous Hall and Nernst effects in anisotropic Fe4-xGexN thin films
DOI: 10.5281/zenodo.18197297
title: Two-component anomalous Hall and Nernst effects in anisotropic Fe4-xGexN thin films