cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10326968
title: Supplementary Material for: Alexithymia, Psychological Distress, and Social Impairment in Patients with Hidradenitis Suppurativa

description: <b><i>Background:</i></b> Hidradenitis suppurativa (HS) is a rare, chronic, inflammatory skin disease characterized by deep-seated nodules, abscesses, and draining fistulas. HS has a substantial adverse impact on patients’ lives. Only a few studies investigated the relationship between health-related quality of life, psychological distress, and emotional dysregulation in patients with HS. Alexithymia, namely the difficulty in describing or recognizing emotions, has been associated with various psychological disorders, such as anxiety, depression, and psychological distress. <b><i>Objective:</i></b> The aim of this study was to examine the prevalence of alexithymia in patients with HS and its association with demographic and clinical variables, quality of life indices, and psychological distress. <b><i>Methods:</i></b> Ninety outpatients with HS completed the 20-item Toronto Alexithymia Scale, the 12-item General Health Questionnaire (GHQ-12), the Dermatology Life Quality Index, the Skindex-17, and the 36-Item Short-Form Health Survey. Information on sociodemographic and clinical variables was retrieved from clinical records. <b><i>Results:</i></b> Alexithymia or borderline alexithymia was observed in 44.4% of patients with HS, with a higher prevalence of the alexithymic trait in women than in men (51.7 vs. 31.2%). We did not find any association between alexithymia and clinical variables. Of the entire sample analyzed, 46.1% reported high psychological distress; among them, 78% reported alexithymia or borderline alexithymia compared to 16.7% among GHQ noncases. Furthermore, HS patients with alexithymia or borderline alexithymia showed significantly higher scores on the Skindex-17 psychosocial scale and the Dermatology Life Quality Index, and a lower score on the mental component of the 36-item Short-Form Health Survey, than nonalexithymic patients. <b><i>Conclusions:</i></b> Dermatologists should consider alexithymia in the diagnosis and treatment of HS patients, given its important role in psychological and psychosocial distress.
DOI: 10.6084/m9.figshare.10327172.v1
title: Supplementary Material for: Fluorescence Lifetime Patterns of Retinal Pigment Epithelium Atrophy in Patients with Stargardt Disease and Age-Related Macular Degeneration

description: <b><i>Purpose:</i></b> To investigate whether autofluorescence lifetime patterns within retinal pigment epithelium (RPE) atrophy differ between age-related macular degeneration (AMD) and Stargardt disease (STGD). <b><i>Methods:</i></b> Mean retinal autofluorescence lifetimes were measured in a short and a long spectral channel (SSC: 498–560 nm; LSC: 560–720 nm). Mean retinal fluorescence lifetimes were analyzed with corresponding clinical features, fundus images, fundus autofluorescence intensity images, and optical coherence tomography. Mean fluorescence lifetime values of atrophic areas were compared between the two cohorts and within the same patient to adjacent nonatrophic regions. <b><i>Results:</i></b> Mean fluorescence lifetimes within areas with RPE atrophy of 13 patients with STGD (mean age ± SEM 43.7 ± 5 years) and 30 patients with geographic atrophy (mean age: 78 ± 2 years) were analyzed and compared to age-matched healthy participants. The mean area of RPE atrophy in STGD and AMD was 6.6 ± 2.3 mm<sup>2</sup> (range: 0.66–33.17 mm<sup>2</sup>) and 17.5 ± 3.8 mm<sup>2</sup> (range: 0.58–50.02 mm<sup>2</sup>), respectively. In patients with AMD, atrophic areas revealed significantly longer mean fluorescence lifetime values as compared with patients with STGD (SSC: 997 ± 60 vs. 363 ± 26 ps; LSC: 880 ± 46 vs. 393 ± 23 ps; <i>p</i> &lt; 0.0001). <b><i>Conclusions:</i></b> This study established that RPE atrophy in patients secondary to STGD and AMD display distinctive mean fluorescence lifetime characteristics. As retinal fluorescence lifetimes within areas of RPE atrophy were significantly longer in AMD patients, the analysis of specific lifetime patterns may provide additional insight into the disease processes and the pathogenetic mechanisms in the development of atrophic patches in AMD and STGD.
DOI: 10.6084/m9.figshare.10326968.v1
title: Supplementary Material for: Alexithymia, Psychological Distress, and Social Impairment in Patients with Hidradenitis Suppurativa

description: <b><i>Background:</i></b> Hidradenitis suppurativa (HS) is a rare, chronic, inflammatory skin disease characterized by deep-seated nodules, abscesses, and draining fistulas. HS has a substantial adverse impact on patients’ lives. Only a few studies investigated the relationship between health-related quality of life, psychological distress, and emotional dysregulation in patients with HS. Alexithymia, namely the difficulty in describing or recognizing emotions, has been associated with various psychological disorders, such as anxiety, depression, and psychological distress. <b><i>Objective:</i></b> The aim of this study was to examine the prevalence of alexithymia in patients with HS and its association with demographic and clinical variables, quality of life indices, and psychological distress. <b><i>Methods:</i></b> Ninety outpatients with HS completed the 20-item Toronto Alexithymia Scale, the 12-item General Health Questionnaire (GHQ-12), the Dermatology Life Quality Index, the Skindex-17, and the 36-Item Short-Form Health Survey. Information on sociodemographic and clinical variables was retrieved from clinical records. <b><i>Results:</i></b> Alexithymia or borderline alexithymia was observed in 44.4% of patients with HS, with a higher prevalence of the alexithymic trait in women than in men (51.7 vs. 31.2%). We did not find any association between alexithymia and clinical variables. Of the entire sample analyzed, 46.1% reported high psychological distress; among them, 78% reported alexithymia or borderline alexithymia compared to 16.7% among GHQ noncases. Furthermore, HS patients with alexithymia or borderline alexithymia showed significantly higher scores on the Skindex-17 psychosocial scale and the Dermatology Life Quality Index, and a lower score on the mental component of the 36-item Short-Form Health Survey, than nonalexithymic patients. <b><i>Conclusions:</i></b> Dermatologists should consider alexithymia in the diagnosis and treatment of HS patients, given its important role in psychological and psychosocial distress.
DOI: 10.6084/m9.figshare.10326854
title: Race-specific alterations in DNA methylation among middle-aged African Americans and Whites with metabolic syndrome

description: Metabolic syndrome (MetS) is a cluster of cardiometabolic risk factors for all-cause mortality, cardiovascular disease, and cancer. Identifying epigenetic alterations associated with MetS in African Americans (AAs) and Whites may provide insight into genes that influence its differential health outcomes. We examined DNA methylation (DNAm) and performed an epigenome-wide association study (EWAS) of MetS among AAs and Whites with and without MetS. We assessed age, race and poverty status associated DNAm among AAs (n = 225) and White (n = 233) adults using NCEP-ATP III guidelines. Genome-wide DNAm measurement was assessed using Illumina Infinium Methylation EPIC BeadChip. Differentially methylated positions (DMPs) and differentially methylated regions (DMRs) were identified using <i>dmpFinder</i> and <i>bumphunter</i>. EWAS was performed using CpGassoc. We found significant DMPs associated with age, poverty status and MetS in each race. <i>GSTT1</i>(Glutathione S-Transferase Theta 1) was one of the top-hypermethylated genes and <i>MIPEP</i> (Mitochondrial Intermediate Peptidase) was one of the most hypomethylated genes when comparing AAs with and without MetS. <i>PPP1R13L</i> (Protein Phosphatase 1 Regulatory Subunit 13 Like) was the top hypermethylated and <i>SCD</i> (stearoyl-CoA desaturase-1) was one of the most hypomethylated genes for Whites with and without MetS. EWAS results showed that DNAm differences might contribute to MetS risk among Whites and AAs since different genes were identified in AAs and Whites. We replicated previously identified MetS associated genes and found that Thioredoxin-interacting protein (<i>TXN1P</i>) was statistically significantly differentially expressed only in Whites. Our results may be useful in further studies of genes underlying differences in MetS among AAs and Whites.
DOI: 10.6084/m9.figshare.10326803
title: Chemical and meteorogical data during 2018 winter in Beijing, China and Gwangju, Korea

description: This dataset was obtained from urban sites in China and Korea during 2018 winter haze period.The dataset contains chemical components (ions, OC, EC, elements, OC speciation) and meteorolgical data (temperature, RH, wind speed, gases concentration) from 3 Jan 2018 to 2 Feb 2018 in Beijing (Peking university, Changping campus), China and Gwangju (Gwangju institute of science and technology), Korea.
DOI: 10.6084/m9.figshare.10326854.v2
title: Race-specific alterations in DNA methylation among middle-aged African Americans and Whites with metabolic syndrome

description: Metabolic syndrome (MetS) is a cluster of cardiometabolic risk factors for all-cause mortality, cardiovascular disease, and cancer. Identifying epigenetic alterations associated with MetS in African Americans (AAs) and Whites may provide insight into genes that influence its differential health outcomes. We examined DNA methylation (DNAm) and performed an epigenome-wide association study (EWAS) of MetS among AAs and Whites with and without MetS. We assessed age, race and poverty status associated DNAm among AAs (n = 225) and White (n = 233) adults using NCEP-ATP III guidelines. Genome-wide DNAm measurement was assessed using Illumina Infinium Methylation EPIC BeadChip. Differentially methylated positions (DMPs) and differentially methylated regions (DMRs) were identified using <i>dmpFinder</i> and <i>bumphunter</i>. EWAS was performed using CpGassoc. We found significant DMPs associated with age, poverty status and MetS in each race. <i>GSTT1</i>(Glutathione S-Transferase Theta 1) was one of the top-hypermethylated genes and <i>MIPEP</i> (Mitochondrial Intermediate Peptidase) was one of the most hypomethylated genes when comparing AAs with and without MetS. <i>PPP1R13L</i> (Protein Phosphatase 1 Regulatory Subunit 13 Like) was the top hypermethylated and <i>SCD</i> (stearoyl-CoA desaturase-1) was one of the most hypomethylated genes for Whites with and without MetS. EWAS results showed that DNAm differences might contribute to MetS risk among Whites and AAs since different genes were identified in AAs and Whites. We replicated previously identified MetS associated genes and found that Thioredoxin-interacting protein (<i>TXN1P</i>) was statistically significantly differentially expressed only in Whites. Our results may be useful in further studies of genes underlying differences in MetS among AAs and Whites.
DOI: 10.6084/m9.figshare.10326803.v2
title: Chemical and meteorogical data during 2018 winter in Beijing, China and Gwangju, Korea

description: This dataset was obtained from urban sites in China and Korea during 2018 winter haze period.The dataset contains chemical components (ions, OC, EC, elements, OC speciation) and meteorolgical data (temperature, RH, wind speed, gases concentration) from 3 Jan 2018 to 2 Feb 2018 in Beijing (Peking university, Changping campus), China and Gwangju (Gwangju institute of science and technology), Korea.
DOI: 10.6084/m9.figshare.10326854.v1
title: Race-specific alterations in DNA methylation among middle-aged African Americans and Whites with Metabolic Syndrome

description: Metabolic syndrome (MetS) is a cluster of cardiometabolic risk factors for all-cause mortality, cardiovascular disease, and cancer. Identifying epigenetic alterations associated with MetS in African Americans (AAs) and Whites may provide insight into genes that influence its differential health outcomes. We examined DNA methylation (DNAm) and performed an epigenome-wide association study (EWAS) of MetS among AA and Whites with and without MetS. We assessed age, race and poverty status associated DNAm among AAs (n=225) and White (n=233) adults using NCEP-ATP III guidelines. Genome-wide DNAm measurement was assessed using Illumina Infinium Methylation EPIC BeadChip. Differentially methylated positions (DMPs) and differentially methylated regions (DMRs) were identified using <i>dmpFinder</i> and <i>bumphunter</i>. EWAS was performed using CpGassoc. We found significant DMPs associated with age, poverty status and MetS in each race. <i>GSTT1(</i>Glutathione S-Transferase Theta 1) was one of the top hypermethylated genes and <i>MIPEP</i> (Mitochondrial Intermediate Peptidase) was one of the most hypomethylated genes when comparing AAs with and without MetS. <i>PPP1R13L</i> (Protein Phosphatase 1 Regulatory Subunit 13 Like) was the top hypermethylated and <i>SCD</i> (stearoyl-CoA desaturase-1) was one of the most hypomethylated genes for Whites with and without MetS. EWAS results showed that DNAm differences might contribute to MetS risk among Whites and AAs since different genes were identified in AAs and Whites. We replicated previously identified MetS associated genes and found that Thioredoxin-interacting protein (<i>TXN1P</i>) was statistically significantly differentially expressed only in Whites. Our results may be useful in further studies of genes underlying differences in MetS among AAs and Whites.
DOI: 10.6084/m9.figshare.10326770
title: Qp^(-1)_structure_Kashiwagi&Nakajima2019.out

description: README<br>$1: Latitude (N)$2: Longitude (E)$3: Depth (km)$4: Qp^(-1)$5: The number of ray paths$6: The number of iterations ( = 5)$7: flag (upper crust = 1, lower crust = 2, mantle = 3, Pacific plate = 4)
DOI: 10.6084/m9.figshare.10326803.v1
title: Simultaneous measurements of chemical characteristics and oxidative potential of fine particles during winter haze period in urban sites in China and Korea

description: This dataset was obtained from urban sites in China and Korea during 2018 winter haze period.
DOI: 10.6084/m9.figshare.10326668
title: xxx

description: README<br>
DOI: 10.6084/m9.figshare.10326668.v1
title: t*data_Kashiwagi&Nakajima2019.dat

description: README<br>Earthquake information (number of columns = 6)$1: Date of each earthquake$2: Latitude (N)$3: Longitude (E)$4: Depth (km)$5: Magnitude (Japan Metrological Agency)$6: The number of stations<br>t* data of each ray path (number of columns = 4)$1: Name of each station$2: t*$3: weight$4: flag (=1)
DOI: 10.6084/m9.figshare.10326668.v2
title: t*data_Kashiwagi&Nakajima2019.dat

description: README<br>Earthquake information (number of columns = 6)$1: Date of each earthquake$2: Latitude (N)$3: Longitude (E)$4: Depth (km)$5: Magnitude (Japan Metrological Agency)$6: The number of stations<br>t* data of each ray path (number of columns = 4)$1: Name of each station$2: t*$3: weight$4: flag (P wave = 1)
DOI: 10.6084/m9.figshare.10326527
title: MOESM2 of Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi

description: Additional file 2: Dataset 1. Genes identified in annelid genomes related to amino acid synthesis pathways.
DOI: 10.6084/m9.figshare.10326527.v1
title: MOESM2 of Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi

description: Additional file 2: Dataset 1. Genes identified in annelid genomes related to amino acid synthesis pathways.
DOI: 10.6084/m9.figshare.10326668.v3
title: t*data_Kashiwagi&Nakajima2019.dat

description: README<br>Earthquake information (number of columns = 6)$1: Date of each earthquake$2: Latitude (N)$3: Longitude (E)$4: Depth (km)$5: Magnitude (Japan Metrological Agency)$6: The number of stations<br>t* data of each ray path (number of columns = 4)$1: Name of each station$2: t*<br>
DOI: 10.6084/m9.figshare.10326668.v4
title: t*data_Kashiwagi&Nakajima2019.dat

description: README<br>Earthquake information (number of columns = 6)$1: Date of each earthquake$2: Latitude (N)$3: Longitude (E)$4: Depth (km)$5: Magnitude (Japan Metrological Agency)$6: The number of stations<br>t* data of each ray path (number of columns = 4)$1: Name of each station$2: t*<br>
DOI: 10.6084/m9.figshare.10326668.v5
title: t*data_Kashiwagi&Nakajima2019.dat

description: README<br>Earthquake information (number of columns = 6)$1: Date of each earthquake$2: Latitude (N)$3: Longitude (E)$4: Depth (km)$5: Magnitude (Japan Metrological Agency)$6: The number of stations<br>t* data of each ray path (number of columns = 4)$1: Name of each station$2: t*<br>
DOI: 10.6084/m9.figshare.10326485
title: MOESM2 of Assessment of computational methods for the analysis of single-cell ATAC-seq data

description: Additional file 2: Code to reproduce the analyses.
DOI: 10.6084/m9.figshare.10326668.v7
title: xxx

description: README<br>
DOI: 10.6084/m9.figshare.10326485.v1
title: MOESM2 of Assessment of computational methods for the analysis of single-cell ATAC-seq data

description: Additional file 2: Code to reproduce the analyses.
DOI: 10.6084/m9.figshare.10326668.v6
title: xxx

description: README<br>Earthquake information (number of columns = 6)$1: Date of each earthquake$2: Latitude (N)$3: Longitude (E)$4: Depth (km)$5: Magnitude (Japan Metrological Agency)$6: The number of stations<br>t* data of each ray path (number of columns = 4)$1: Name of each station$2: t*<br>
DOI: 10.6084/m9.figshare.12866063.v2
title: Untitled Item

description: 示例示例
DOI: 10.6084/m9.figshare.10326464
title: MOESM1 of Assessment of computational methods for the analysis of single-cell ATAC-seq data

description: Additional file 1: Figures S1â€“S24, Tables S1-S21, Supplementary Notes, and Supplementary figure legends
DOI: 10.6084/m9.figshare.12866063
title: Untitled Item

description: 示例示例
DOI: 10.6084/m9.figshare.12866063.v1
title: Untitled Item

description: 示例示例
DOI: 10.6084/m9.figshare.10326464.v1
title: MOESM1 of Assessment of computational methods for the analysis of single-cell ATAC-seq data

description: Additional file 1: Figures S1â€“S24, Tables S1-S21, Supplementary Notes, and Supplementary figure legends
DOI: 10.6084/m9.figshare.10326392
title: What “Tears” Remind Us Of: The Effect of Embodied Cognition on Memories

description: Facial expressions influence our experience and perception of emotions—they not only tell other people what we are feeling but also might tell us what to feel via sensory feedback. We conducted three experiments to investigate the interaction between facial feedback phenomena and different environmental stimuli, by asking participants to remember emotional autobiographical memories. Moreover, we examined how people with schizotypal traits would be affected by their experience of emotional facial simulations. We found that using a directed approach (gripping a pencil with teeth/lips) while remembering a specific autobiographical memory could successfully evoke participants’ positive (e.g. happy and excited)/negative (e.g. angry and sad) emotions (i.e. Experiment 1). When using indirective environmental stimuli (e.g. teardrop glasses), the results of our experiments (i.e. Experiments 2 and 3) investigating facial feedback and the effect of teardrop glasses showed that participants who scored low in schizotypy reported little effect from wearing teardrop glasses, while those with high schizotypy reported a much greater effect in both between- and within-subject conditions. The results are discussed from the perspective of sense of ownership, which people with schizophrenia are believed to have deficits in.<b></b>
DOI: 10.6084/m9.figshare.10326371
title: MOESM1 of Correction to: The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle

description: Additional file 1: Figure S1.Relative abundance (%) of 20 groups of functional genes representing 204 selected genes (number of animals, n = 50 samples). The sum of the relative abundance (%) of genes grouping within the same function is shown in this figure. Figure S2A. Total abundance of 204 selected genes based on diet treatments (n = 50). *P value
DOI: 10.6084/m9.figshare.10326371.v1
title: MOESM1 of Correction to: The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle

description: Additional file 1: Figure S1.Relative abundance (%) of 20 groups of functional genes representing 204 selected genes (number of animals, n = 50 samples). The sum of the relative abundance (%) of genes grouping within the same function is shown in this figure. Figure S2A. Total abundance of 204 selected genes based on diet treatments (n = 50). *P value
DOI: 10.6084/m9.figshare.10326335
title: MOESM4 of Concurrent genome and epigenome editing by CRISPR-mediated sequence replacement

description: Additional file 4: Table S1. Counts of reads including both inverted and forward-oriented sequences that exactly matched the promoter, exon 1, splice donor, PAM mutations, and one of the three sets of allele-defining SNVs (wild-type, methylated or unmethylated) as well as unmatched sequences.
DOI: 10.6084/m9.figshare.10326335.v1
title: MOESM4 of Concurrent genome and epigenome editing by CRISPR-mediated sequence replacement

description: Additional file 4: Table S1. Counts of reads including both inverted and forward-oriented sequences that exactly matched the promoter, exon 1, splice donor, PAM mutations, and one of the three sets of allele-defining SNVs (wild-type, methylated or unmethylated) as well as unmatched sequences.
DOI: 10.6084/m9.figshare.10326266
title: Rooidam 2 Raw Lithic Data (Square 4B, Level 5)

description: This dataset was collected from lithic material originally excavated by Folke Richardt and his team in a 2005-06 excavation from Rooidam 2, an open-air sealed pan site in the Northern Cape Province. The material is currently housed at the McGregor Museum in Kimberley, South Africa.
DOI: 10.6084/m9.figshare.10326266.v1
title: Rooidam 2 Raw Lithic Data (Square 4B, Level 5)

description: This dataset was collected from lithic material originally excavated by Folke Richardt and his team in a 2005-06 excavation from Rooidam 2, an open-air sealed pan site in the Northern Cape Province. The material is currently housed at the McGregor Museum in Kimberley, South Africa.
DOI: 10.6084/m9.figshare.10325960
title: data.xlsx

description: Stock markets data
DOI: 10.6084/m9.figshare.10325960.v1
title: data.xlsx

description: Stock markets data
DOI: 10.6084/m9.figshare.10325849
title: Drought-induced transcriptomic changes in three modern sugarcane cultivars grown in China

description: This dataset contains <i>gene expression levels and differentially expressed gene between samples</i>
DOI: 10.6084/m9.figshare.10325849.v1
title: Drought-induced transcriptomic changes in three modern sugarcane cultivars grown in China

description: This dataset contains <i>gene expression levels and differentially expressed gene between samples</i>
DOI: 10.6084/m9.figshare.10325720
title: Supplementary Material_FEED_FAC-B.pdf

description: This is supplementari material for the article entitled "Determination of pesticides and mycotoxins in feed used in intensive dairy farming systems in Argentina". In this file information about the following is provided: instuments experimental conditions used for the determination of mycotoxins and pesticides by LC-MS/MS and GC-MS/MS; the complete list of the analized compounds (pesticides and mycotoxins) and their extraction performance on the recovery assays; and the results of the different mycotoxins and pesticide residues found on each individual analyzed sample.<br>