cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30899030
title: Microgeographic pattern of song variation in the Rufous-collared Sparrow (<i>Zonotrichia capensis</i>) in southern Patagonia

description: The Rufous-collared Sparrow (<i>Zonotrichia capensis</i>) presents a complex system of vocal dialects that correlate with vegetation structure in central and northern Argentina. However, the patterns of song variation in the Patagonian subspecies <i>Z. c. australis</i> remain largely unknown. It has been suggested that its songs are atypical, of low amplitude and with very slow trills (or even lacking them entirely) despite living in an open environment. We studied the songs of a southern Patagonian population of this species in Monte León National Park, Argentina. In contrast to reports from northern Patagonia, the songs in this southern locality are typical both in terms of their structure and amplitude, and their trill speed falls within the expected range for open habitat songs for this species. We propose that the differences between the songs of the northern and southern Patagonian populations could be due to the migratory nature of the latter and its resultant exposure to the typical songs of the central and northern Argentine populations during late summer and spring. Our results also uncover a clinal pattern of vocal variation along a transect of 3.5 km from a plateau into an erosion valley, as well as differences with the nearby coast. Variation among the three sites (coast, plateau and valley) includes differences in the speed of the trill and vocal frequencies and may be correlated with an environmental gradient related to wind intensity and also influenced by the surf noise on the coast. Southern Patagonian Rufous-collared Sparrow songs have typical structure and amplitude.This contrasts with northern Patagonia, probably due to different migratory behaviours.Songs also show a microgeographic pattern of variation in frequency and trill speed.Wind and surf noise could be the main factors influencing this variation pattern. Southern Patagonian Rufous-collared Sparrow songs have typical structure and amplitude. This contrasts with northern Patagonia, probably due to different migratory behaviours. Songs also show a microgeographic pattern of variation in frequency and trill speed. Wind and surf noise could be the main factors influencing this variation pattern.
DOI: 10.6084/m9.figshare.31052862
title: Drone surveys of birds foraging in intertidal habitats: a proof-of-concept in Moreton Bay, Australia

description: Migratory shorebird populations are declining primarily because of intertidal habitat loss. Conservation efforts rely on monitoring, but ground surveys are generally impractical on extensive mudflats where shorebirds forage. On the 12<sup>th</sup> of March 2024, we used a DJI Mavic 3 Enterprise to conduct a proof-of-concept drone survey of shorebirds foraging on a 650 m × 250 m section of intertidal mudflat within Moreton Bay, Australia (GPS: −27.51, 153.41). We surveyed seven 16 m wide transects, spaced 75 m apart, across the mudflat perpendicular to the tidal front. We generated image mosaics for each transect and used manual and computer vision methods to locate and identify the birds. We also conducted concurrent ground counts and monitored for disturbance. Drone surveys detected 77 waterbirds, while ground counts recorded 46 birds, including 31 waterbirds, 2 seabirds, 12 non-migratory shorebirds, and 1 migratory shorebird. Differences in counts were attributed to excessive spacing between transects. We recommend that surveys: (1) use sensors capable of 0.5 cm pix<sup>−1</sup> resolution and a large image footprint from above the flight initiation distance of sensitive species; (2) use multiple batteries and drones if needed; (3) use a transect-based flight path oriented perpendicular to the tidal front with transects spaced using conservative abundance estimates; (4) acquire approval to fly beyond visual line of sight and above 120 m if necessary; (5) ensure compatibility between flight application, camera, and flight plan; (6) consider processing images individually rather than as orthomosaics; (7) use computer vision tools for large sites or aggregations.
DOI: 10.6084/m9.figshare.31052862.v2
title: Drone surveys of birds foraging in intertidal habitats: a proof-of-concept in Moreton Bay, Australia

description: Migratory shorebird populations are declining primarily because of intertidal habitat loss. Conservation efforts rely on monitoring, but ground surveys are generally impractical on extensive mudflats where shorebirds forage. On the 12<sup>th</sup> of March 2024, we used a DJI Mavic 3 Enterprise to conduct a proof-of-concept drone survey of shorebirds foraging on a 650 m × 250 m section of intertidal mudflat within Moreton Bay, Australia (GPS: −27.51, 153.41). We surveyed seven 16 m wide transects, spaced 75 m apart, across the mudflat perpendicular to the tidal front. We generated image mosaics for each transect and used manual and computer vision methods to locate and identify the birds. We also conducted concurrent ground counts and monitored for disturbance. Drone surveys detected 77 waterbirds, while ground counts recorded 46 birds, including 31 waterbirds, 2 seabirds, 12 non-migratory shorebirds, and 1 migratory shorebird. Differences in counts were attributed to excessive spacing between transects. We recommend that surveys: (1) use sensors capable of 0.5 cm pix<sup>−1</sup> resolution and a large image footprint from above the flight initiation distance of sensitive species; (2) use multiple batteries and drones if needed; (3) use a transect-based flight path oriented perpendicular to the tidal front with transects spaced using conservative abundance estimates; (4) acquire approval to fly beyond visual line of sight and above 120 m if necessary; (5) ensure compatibility between flight application, camera, and flight plan; (6) consider processing images individually rather than as orthomosaics; (7) use computer vision tools for large sites or aggregations.
DOI: 10.6084/m9.figshare.31045584
title: When high dispersal meets high diversification: the case of the White-bellied Cuckooshrike, <i>Coracina papuensis</i>

description: Within the Indo-Pacific, understory birds have received the majority of phylogeographic investigation while canopy birds are comparatively under-studied. The White-bellied Cuckooshrike (<i>Coracina papuensis</i>), generally considered a canopy species, contains 13–15 described taxa but lacks a modern genomic dataset corroborating these distinctions. Therefore, we evaluated the phylogeography of <i>C. papuensis</i> using genome-wide single nucleotide polymorphisms for 49 individuals representing the taxa with available tissue samples (10 of the 13–15). We identified varying support for eight different lineages with limited diversification across the Australian continental shelf but surprisingly we found support for two lineages in eastern Papua New Guinea (Central and Oro Provinces) and evidence of long-distance dispersal.
DOI: 10.6084/m9.figshare.31045584.v1
title: When high dispersal meets high diversification: the case of the White-bellied Cuckooshrike, <i>Coracina papuensis</i>

description: Within the Indo-Pacific, understory birds have received the majority of phylogeographic investigation while canopy birds are comparatively under-studied. The White-bellied Cuckooshrike (<i>Coracina papuensis</i>), generally considered a canopy species, contains 13–15 described taxa but lacks a modern genomic dataset corroborating these distinctions. Therefore, we evaluated the phylogeography of <i>C. papuensis</i> using genome-wide single nucleotide polymorphisms for 49 individuals representing the taxa with available tissue samples (10 of the 13–15). We identified varying support for eight different lineages with limited diversification across the Australian continental shelf but surprisingly we found support for two lineages in eastern Papua New Guinea (Central and Oro Provinces) and evidence of long-distance dispersal.
DOI: 10.6084/m9.figshare.31052862.v1
title: Drone surveys of birds foraging in intertidal habitats: a proof-of-concept in Moreton Bay, Australia

description: Migratory shorebird populations are declining primarily because of intertidal habitat loss. Conservation efforts rely on monitoring, but ground surveys are generally impractical on extensive mudflats where shorebirds forage. On the 12<sup>th</sup> of March 2024, we used a DJI Mavic 3 Enterprise to conduct a proof-of-concept drone survey of shorebirds foraging on a 650 m × 250 m section of intertidal mudflat within Moreton Bay, Australia (GPS: −27.51, 153.41). We surveyed seven 16 m wide transects, spaced 75 m apart, across the mudflat perpendicular to the tidal front. We generated image mosaics for each transect and used manual and computer vision methods to locate and identify the birds. We also conducted concurrent ground counts and monitored for disturbance. Drone surveys detected 77 waterbirds, while ground counts recorded 46 birds, including 31 waterbirds, 2 seabirds, 12 non-migratory shorebirds, and 1 migratory shorebird. Differences in counts were attributed to excessive spacing between transects. We recommend that surveys: (1) use sensors capable of 0.5 cm pix<sup>−1</sup> resolution and a large image footprint from above the flight initiation distance of sensitive species; (2) use multiple batteries and drones if needed; (3) use a transect-based flight path oriented perpendicular to the tidal front with transects spaced using conservative abundance estimates; (4) acquire approval to fly beyond visual line of sight and above 120 m if necessary; (5) ensure compatibility between flight application, camera, and flight plan; (6) consider processing images individually rather than as orthomosaics; (7) use computer vision tools for large sites or aggregations.
DOI: 10.6084/m9.figshare.30815999
title: Both human activities and environmental conditions influence foraging oystercatchers on urban beaches

description: In developed coastal areas, shorebirds utilising sandy beaches as their primary habitat are often disturbed by human activities. Shorebird responses to human activities can have fitness consequences, through changes in their behaviour. In this study, we investigated whether human activities (number of people, presence of dogs) and environmental factors (air temperatures, wind speeds) influenced the abundance and the percentage of foraging birds for two urban shorebird species; <i>Haematopus longirostris</i> (Pied Oystercatcher) and <i>Haematopus fuliginosus</i> (Sooty Oystercatcher). We found that the number of oystercatchers (abundance) was lower when many people and dogs were present. However, a higher percentage of oystercatchers were observed foraging when people were present in high numbers and when dogs were present, a pattern that seems to be driven by Sooty Oystercatchers rather than Pied Oystercatchers. We also found that oystercatcher abundance and the percentage of foraging birds showed a negative relationship with air temperature and a positive relationship with wind speed. We discuss these results in the context of our study sites and the implications they may have for oystercatcher foraging habits, reinforcing the idea that multiple factors need to be investigated when assessing the potential impacts of human activities on shorebirds.
DOI: 10.6084/m9.figshare.30815999.v1
title: Both human activities and environmental conditions influence foraging oystercatchers on urban beaches

description: In developed coastal areas, shorebirds utilising sandy beaches as their primary habitat are often disturbed by human activities. Shorebird responses to human activities can have fitness consequences, through changes in their behaviour. In this study, we investigated whether human activities (number of people, presence of dogs) and environmental factors (air temperatures, wind speeds) influenced the abundance and the percentage of foraging birds for two urban shorebird species; <i>Haematopus longirostris</i> (Pied Oystercatcher) and <i>Haematopus fuliginosus</i> (Sooty Oystercatcher). We found that the number of oystercatchers (abundance) was lower when many people and dogs were present. However, a higher percentage of oystercatchers were observed foraging when people were present in high numbers and when dogs were present, a pattern that seems to be driven by Sooty Oystercatchers rather than Pied Oystercatchers. We also found that oystercatcher abundance and the percentage of foraging birds showed a negative relationship with air temperature and a positive relationship with wind speed. We discuss these results in the context of our study sites and the implications they may have for oystercatcher foraging habits, reinforcing the idea that multiple factors need to be investigated when assessing the potential impacts of human activities on shorebirds.
DOI: 10.25549/pcra-ouc11399bp3f
title: Druzheskoe slovo = Palavra do amigo = [A friendly word], vol. 7, no. 2-3 (February-March 1934)

description: Monthly
DOI: 10.25549/pcra-ouc11399bp3p
title: Druzheskoe slovo = Palavra do amigo = [A friendly word], vol. 8, no. 2-3 (February-March 1935)

description: Monthly
DOI: 10.18131/k9fkv-4x518
title: Supplementary Data for: The Transcription Factor TCF21 is Necessary for Adoption of Cell Fates by Foxd1+ Stromal Progenitors during Kidney Development

description: Supplementary Materials

Supplementary Figure Legends

Supplementary Methods

Suppl Fig. S1: Flow cytometry analysis of single-cell suspensions from E14.5 mouse kidneys for scRNA-seq

Suppl Fig. S2: Single-cell RNA-seq analysis of Foxd1GFP+ sorted cells from control and Tcf21-cKO kidneys

Suppl Fig. S3: Single-cell RNA-seq analysis of stromal cells

Suppl Fig. S4: Stromal subpopulation markers for module scores 

Suppl Fig. S5: Comparison of stromal cells between Tcf21-cKO and controls

Suppl Fig. S6: Elbow plot, cluster tree, and proportion graph by sex for stromal clusters

Suppl Fig. S7: Stromal Endomucin+ cells in E18.5 Tcf21-cKO kidneys

Suppl Fig. S8: Single-cell RNA-seq analysis of E18.5 control and Tcf21-cKO kidneys

Suppl Fig. S9: Lineage annotation of single-cell ATAC-seq analysis at E14.5

Suppl Table S1: E14.5 scRNA-seq a. All cluster markers.  b. Cell type markers

Suppl Table S2: E14.5 scRNA-seq a. Stromal subpopulation markers. b. Marker overlap with Combes et al

Suppl Table S3: E14.5 scRNA-seq a. Downsampled cell numbers by stromal cluster by sample b. Differential gene expression output c. GO term output up-regulated d. GO term output down-regulated

Suppl Table S4: a. Monocle module genes. b. Number of cells expressing modules

Suppl Table S5: E18.5 scRNA-seq a. All cluster markers b. Stromal subpopulation markers c. Emcn+ mutant markers

Suppl Table S6: Matrisome associated gene module

Suppl Table S7: E14.5 scATAC-seq a. Stromal subpopulation markers based on gene activity scores

Suppl Table S8: E18.5 bulk RNA-seq a. DEGs (Tcf21-cKO vs Control) b. GO Term up-regulated c. GO Term down-regulated

Suppl Table S9: Significant ligand-receptor interactions from CellChat
DOI: 10.15468/dl.xgjn28
title: Occurrence Download

description: A dataset containing 1903632 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Nepal",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Aves, Insecta, Plantae)"
 ]
}

 The dataset includes 1903632 records from 915 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000440-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7hxeye
title: Occurrence Download

description: A dataset containing 18273 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Stenella longirostris)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 18273 records from 285 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000478-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-ouc11399bp3x
title: Druzheskoe slovo = Palavra do amigo = [A friendly word], vol. 8, no. 7 (July 1935)

description: Monthly
DOI: 10.15468/dl.jpnupy
title: Occurrence Download

description: A dataset containing 30858 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Stenella frontalis)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 30858 records from 235 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000477-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.363pmy
title: Occurrence Download

description: A dataset containing 285 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Didymoglossum kapplerianum (J.W.Sturm) Ebihara & Dubuisson"
 ]
}

 The dataset includes 285 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003933-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4hjsfu
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Physocyclus enaulus"
 ]
}

 The dataset includes 91 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020494-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/bgb-s76-cvc
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cs7-923-zb8
title: Catenicella de Blainville, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q2p-dly-ybl
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7x7-4zr-jrt
title: †Dittosaria Busk, 1866

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gv8-hpv-4rj
title: Stylopoma informata (Lonsdale, 1845)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/818-pzc-88t
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z6g-5rp-hll
title: †Enoplostomella synthetica Canu & Bassler, 1920

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3wf-vy0-aza
title: Sorex (Sorex) minutus Linnaeus, 1766

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n79-2c8-kxy
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7wh-7g8-z3q
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cyb-0en-kj6
title: †Rastellum Faujas de Saint Fond, 1799

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9mb-r3h-4h9
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h7p-rr1-qrf
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1p7-rc2-m90
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hkd-af1-zan
title: †Margaretta bipartita (Reuss, 1869)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6sf-pkh-5z3
title: Synnotum Pieper, 1881

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bwq-5a7-831
title: Cupuladria canariensis (Busk, 1859)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fkg-gd3-zb9
title: Electra pilosa (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w3p-td1-pjg
title: Vincularia Defrance, 1829

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6q2-sr9-pv0
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nad-rj5-t5b
title: Discoporella d'Orbigny, 1852

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y96-aba-nne
title: Maianthemum F.H.Wigg.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lyt-rw6-8ce
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jc4-kf1-m49
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ncq-18w-m5a
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5067/viirs/vnp43d51.001
title: VIIRS/NPP BRDF/Albedo Valid Observation DNB Daily L3 Global 30ArcSec CMG V001
DOI: 10.5067/viirs/vnp43d52.001
title: VIIRS/NPP BRDF/Albedo Snow Status Daily L3 Global 30ArcSec CMG V001
DOI: 10.5067/viirs/vnp43d53.001
title: VIIRS/NPP BRDF/Albedo Uncertainty Daily L3 Global 30ArcSec CMG V001
DOI: 10.5067/viirs/vnp43d54.001
title: VIIRS/NPP BRDF/Albedo BSA at Solar Noon Band M1 Daily L3 Global 30ArcSec CMG V001
DOI: 10.5067/viirs/vnp43d55.001
title: VIIRS/NPP BRDF/Albedo BSA at Solar Noon Band M2 Daily L3 Global 30ArcSec CMG V001
DOI: 10.5067/viirs/vnp43d56.001
title: VIIRS/NPP BRDF/Albedo BSA at Solar Noon Band M3 Daily L3 Global 30ArcSec CMG V001
DOI: 10.5067/viirs/vnp43d57.001
title: VIIRS/NPP BRDF/Albedo BSA at Solar Noon Band M4 Daily L3 Global 30ArcSec CMG V001
DOI: 10.5067/viirs/vnp43d58.001
title: VIIRS/NPP BRDF/Albedo BSA at Solar Noon Band M5 Daily L3 Global 30ArcSec CMG V001
DOI: 10.5067/viirs/vnp43d59.001
title: VIIRS/NPP BRDF/Albedo BSA at Solar Noon Band M7 Daily L3 Global 30ArcSec CMG V001
DOI: 10.5067/viirs/vnp43d60.001
title: VIIRS/NPP BRDF/Albedo BSA at Solar Noon Band M8 Daily L3 Global 30ArcSec CMG V001
DOI: 10.5067/viirs/vnp43d61.001
title: VIIRS/NPP BRDF/Albedo BSA at Solar Noon Band M10 Daily L3 Global 30ArcSec CMG V001
DOI: 10.5067/viirs/vnp43d62.001
title: VIIRS/NPP BRDF/Albedo BSA at Solar Noon Band M11 Daily L3 Global 30ArcSec CMG V001
DOI: 10.5067/viirs/vnp43d63.001
title: VIIRS/NPP BRDF/Albedo BSA at Solar Noon Band VIS Daily L3 Global 30ArcSec CMG V001
DOI: 10.15468/dl.9vm4mc
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trichomycterus sketi)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086575-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5067/viirs/vnp43d64.001
title: VIIRS/NPP BRDF/Albedo BSA at Solar Noon NIR Daily L3 Global 30ArcSec CMG V001
DOI: 10.5067/viirs/vnp43d65.001
title: VIIRS/NPP BRDF/Albedo BSA at Solar Noon ShortWave Daily L3 Global 30ArcSec CMG V001