cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10826428
title: PMDB: a relational database for PubMed

description: The files constitute a compressed dump of PMDB, which was created in PostgreSQL 14 using the pmparser R package. Once you have a Postgres server running, you can set up the database as follows:


1. Untar the file containing the database dump, which will create a folder. Substitute <tar_name> with the name of the tar file.


tar xvf <tar_name> && rm <tar_name>


2. Restore the database onto your Postgres server. Below is one way. Replace <...> as appropriate, substituting <dump_name> with the name of the new folder containing the dump files. This will take some time, so use as many cores as you can spare. Beware the full database is about 136 GB.


createdb -h <host_name> -U <user_name> pmdb
pg_restore -j <num_cores> --no-privileges --no-owner -h <host_name> -U <user_name> -d pmdb <dump_name>


MEDLINE/PubMed data are courtesy of the U.S. National Library of Medicine. See NLM's Terms and Conditions.
DOI: 10.5281/zenodo.11642118
title: PMDB: a relational database for PubMed

description: The files constitute a compressed dump of PMDB, which was created in PostgreSQL 14 using the pmparser R package. Once you have a Postgres server running, you can set up the database as follows:


1. Untar the file containing the database dump, which will create a folder. Substitute <tar_name> with the name of the tar file.


tar xvf <tar_name> && rm <tar_name>


2. Restore the database onto your Postgres server. Below is one way. Replace <...> as appropriate, substituting <dump_name> with the name of the new folder containing the dump files. This will take some time, so use as many cores as you can spare. Beware the full database is about 136 GB.


createdb -h <host_name> -U <user_name> pmdb
pg_restore -j <num_cores> --no-privileges --no-owner -h <host_name> -U <user_name> -d pmdb <dump_name>


MEDLINE/PubMed data are courtesy of the U.S. National Library of Medicine. See NLM's Terms and Conditions.
DOI: 10.5281/zenodo.14616021
title: PMDB: a relational database for PubMed

description: The files constitute a compressed dump of PMDB, which was created in PostgreSQL 14 using the pmparser R package. Once you have a Postgres server running, you can set up the database as follows:


1. Untar the file containing the database dump, which will create a folder. Substitute <tar_name> with the name of the tar file.


tar xvf <tar_name> && rm <tar_name>


2. Restore the database onto your Postgres server. Below is one way. Replace <...> as appropriate, substituting <dump_name> with the name of the new folder containing the dump files. This will take some time, so use as many cores as you can spare. Beware the full database is about 136 GB.


createdb -h <host_name> -U <user_name> pmdb
pg_restore -j <num_cores> --no-privileges --no-owner -h <host_name> -U <user_name> -d pmdb <dump_name>


MEDLINE/PubMed data are courtesy of the U.S. National Library of Medicine. See NLM's Terms and Conditions.
DOI: 10.5281/zenodo.4737443
title: PMDB: a relational database for PubMed

description: The tar file contains a compressed dump of PMDB, which was created in PostgreSQL 12 using the pmparser R package. Once you have a Postgres server running, you can set up the database as follows: 1. Untar the file containing the database dump, which will create a folder. Substitute &lt;tar_name&gt; with the name of the tar file. <pre><code class="language-bash">tar xvf &lt;tar_name&gt; && rm &lt;tar_name&gt;</code></pre> 2. Restore the database onto your Postgres server. Below is one way. Replace &lt;...&gt; as appropriate, substituting &lt;dump_name&gt; with the name of the dump folder. This will take some time, so use as many cores as you can spare. Beware the full database is about 113 GiB. <pre><code class="language-bash">createdb -h &lt;host_name&gt; -U &lt;user_name&gt; pmdb pg_restore -j &lt;num_cores&gt; --no-privileges --no-owner -h &lt;host_name&gt; -U &lt;user_name&gt; -d pmdb &lt;dump_name&gt;</code></pre> MEDLINE/PubMed data are courtesy of the U.S. National Library of Medicine. See NLM's Terms and Conditions.
DOI: 10.5281/zenodo.5879035
title: PMDB: a relational database for PubMed

description: The tar file contains a compressed dump of PMDB, which was created in PostgreSQL 12 using the pmparser R package. Once you have a Postgres server running, you can set up the database as follows: 1. Untar the file containing the database dump, which will create a folder. Substitute &lt;tar_name&gt; with the name of the tar file. <pre><code class="language-bash">tar xvf &lt;tar_name&gt; && rm &lt;tar_name&gt;</code></pre> 2. Restore the database onto your Postgres server. Below is one way. Replace &lt;...&gt; as appropriate, substituting &lt;dump_name&gt; with the name of the dump folder. This will take some time, so use as many cores as you can spare. Beware the full database is about 136 GB. <pre><code class="language-bash">createdb -h &lt;host_name&gt; -U &lt;user_name&gt; pmdb pg_restore -j &lt;num_cores&gt; --no-privileges --no-owner -h &lt;host_name&gt; -U &lt;user_name&gt; -d pmdb &lt;dump_name&gt;</code></pre> MEDLINE/PubMed data are courtesy of the U.S. National Library of Medicine. See NLM's Terms and Conditions.
DOI: 10.5281/zenodo.7328849
title: PMDB: a relational database for PubMed

description: The files constitute a compressed dump of PMDB, which was created in PostgreSQL 14 using the pmparser R package. Once you have a Postgres server running, you can set up the database as follows: 1. Untar the file containing the database dump, which will create a folder. Substitute &lt;tar_name&gt; with the name of the tar file. <pre><code class="language-bash">tar xvf &lt;tar_name&gt; && rm &lt;tar_name&gt;</code></pre> 2. Restore the database onto your Postgres server. Below is one way. Replace &lt;...&gt; as appropriate, substituting &lt;dump_name&gt; with the name of the new folder containing the dump files. This will take some time, so use as many cores as you can spare. Beware the full database is about 136 GB. <pre><code class="language-bash">createdb -h &lt;host_name&gt; -U &lt;user_name&gt; pmdb pg_restore -j &lt;num_cores&gt; --no-privileges --no-owner -h &lt;host_name&gt; -U &lt;user_name&gt; -d pmdb &lt;dump_name&gt;</code></pre> MEDLINE/PubMed data are courtesy of the U.S. National Library of Medicine. See NLM's Terms and Conditions.
DOI: 10.5281/zenodo.8035382
title: PMDB: a relational database for PubMed

description: The files constitute a compressed dump of PMDB, which was created in PostgreSQL 14 using the pmparser R package. Once you have a Postgres server running, you can set up the database as follows: 1. Untar the file containing the database dump, which will create a folder. Substitute &lt;tar_name&gt; with the name of the tar file. <pre><code class="language-bash">tar xvf &lt;tar_name&gt; && rm &lt;tar_name&gt;</code></pre> 2. Restore the database onto your Postgres server. Below is one way. Replace &lt;...&gt; as appropriate, substituting &lt;dump_name&gt; with the name of the new folder containing the dump files. This will take some time, so use as many cores as you can spare. Beware the full database is about 136 GB. <pre><code class="language-bash">createdb -h &lt;host_name&gt; -U &lt;user_name&gt; pmdb pg_restore -j &lt;num_cores&gt; --no-privileges --no-owner -h &lt;host_name&gt; -U &lt;user_name&gt; -d pmdb &lt;dump_name&gt;</code></pre> MEDLINE/PubMed data are courtesy of the U.S. National Library of Medicine. See NLM's Terms and Conditions.
DOI: 10.15468/dl.z8h8gq
title: Occurrence Download

description: A dataset containing 437 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arcyptera microptera (Fischer von Waldheim, 1833)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 437 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061263-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7957118
title: Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)

description: Datasets for PILOT


Although clinical applications represent the next challenge in single-cell genomics and digital pathology, we are still lacking computational methods for the analysis of single-cell and pathomics data at a patient level for finding patient trajectories associated with diseases. This is challenging as a single-cell/pathomics data is represented by clusters of cells/structures, which cannot be compared with other samples. We propose here patient Level analysis with Optimal Transport (PILOT). PILOT uses optimal transport to compute the Wasserstein distance between two single single-cell experiments. This allows us to perform unsupervised analysis at the sample level and to uncover trajectories associated with disease progression. Moreover, PILOT provides a statistical approach to delineate non-linear changes in cell populations, gene expression and tissues structures related to the disease trajectories.  We evaluate PILOT and competing approaches in  disease single-cell genomics and pathomics studies with up to 1.000 patients/donors and millions of cells or structures. Results demonstrate that PILOT detects disease-associated samples, cells, and genes from large and complex single-cell and pathomics data.
DOI: 10.21227/8kpb-sv27
title: Visible-near infrared light and PPG signals for noninvasive blood glucose measurement

description: This dataset consists of absorbance and PPG signals at 625 nm, 850 nm, and 940 nm detected from the index finger of the subjects’ left hands, and the corresponding reference blood glucose values. There are three output channels for each wavelength, corresponding to three light propagation paths(diffuse reflection at the near end, diffuse reflection at the far end, and transmission).
DOI: 10.15468/dl.zgxw4c
title: Occurrence Download

description: A dataset containing 1042 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Barbitistes constrictus Brunner von Wattenwyl, 1878",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1042 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061264-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2l8bbk
title: CCDC 2391288: Experimental Crystal Structure Determination

description: Related Article: Zhilai Zhang, Yu Xu, Menglin Peng, Siyu Song, Yuanzheng Wei, Huimin Hu, Xiuju Wang, Fuchao Yu|2024|Chem.Commun.|60|14968|doi:10.1039/D4CC05895J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l8bcl
title: CCDC 2391289: Experimental Crystal Structure Determination

description: Related Article: Zhilai Zhang, Yu Xu, Menglin Peng, Siyu Song, Yuanzheng Wei, Huimin Hu, Xiuju Wang, Fuchao Yu|2024|Chem.Commun.|60|14968|doi:10.1039/D4CC05895J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.gqmnx8
title: Occurrence Download

description: A dataset containing 575830 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Betula pubescens Ehrh.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 575830 records from 1154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061249-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s3auty
title: Occurrence Download

description: A dataset containing 11109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Barbitistes serricauda (Fabricius, 1794)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11109 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061266-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qw4rrc
title: Occurrence Download

description: A dataset containing 11850 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astragalus hamosus L."
 ]
}

 The dataset includes 11850 records from 310 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061268-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mvk11u
title: Occurrence Download

description: A dataset containing 425 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygraphus punctifrons C.G.Thomson, 1886"
 ]
}

 The dataset includes 425 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098066-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5rgyer
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epitrimerus filipendulae (Liro, 1940)"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067070-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c9jzmm
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Palicourea awa C.M.Taylor"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0177614-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tpte5p
title: Occurrence Download

description: A dataset containing 10288 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Anodorhynchus hyacinthinus (Latham, 1790)"
 ]
}

 The dataset includes 10288 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062063-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sds4nd
title: Occurrence Download

description: A dataset containing 54743 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "Country is Mexico",
 "BasisOfRecord is Specimen",
 "StateProvince is veracruz"
 ]
}

 The dataset includes 54743 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098067-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qpdczn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hectopsylla cypha Jordan, 1942",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008521-231120084113126/datasets/export for details.
DOI: 10.15468/dl.uyglan
title: Occurrence Download

description: A dataset containing 552 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxyrhopus trigeminus Duméril, Bibron & Duméril, 1854"
 ]
}

 The dataset includes 552 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067071-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.am9nai
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xyleborus intrusus Blandford, 1898"
 ]
}

 The dataset includes 56 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098068-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qzw5ww
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.16_1",
 "TaxonKey is Bovidae"
 ]
}

 The dataset includes 81 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002570-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7ftth
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((115.18433 27.91626,121.64429 27.91626,121.64429 31.37329,115.18433 31.37329,115.18433 27.91626))",
 "HasCoordinate is true",
 "TaxonKey is Cuneopsis pisciculus (Heude, 1874)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067079-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zds1vm
title: Occurrence Download

description: A dataset containing 522 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crypturgus subcribrosus Eggers, 1933"
 ]
}

 The dataset includes 522 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098071-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jdrmcx
title: Occurrence Download

description: A dataset containing 1056 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malachra alceifolia Jacq.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1056 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039843-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w6dyc2
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pinus elliottii Engelm.",
 "Year 1990-2020"
 ]
}

 The dataset includes 99 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067079-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rmhia1
title: Occurrence Download

description: A dataset containing 469 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyclorhipidion bodoanum (Reitter, 1913)"
 ]
}

 The dataset includes 469 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098072-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fkt7yh
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phalotris labiomaculatus De Lema, 2002"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067084-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wxkr5x
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriogonum tumulosum (Barneby) Reveal"
 ]
}

 The dataset includes 98 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0201642-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3j32s2
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microchilus austrobrasiliensis (Porsch) Ormerod"
 ]
}

 The dataset includes 48 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0177615-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9rnhzq
title: Occurrence Download

description: A dataset containing 30457095 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Observation",
 "Year is greater than or equal to 1959"
 ]
}

 The dataset includes 30457095 records from 296 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098076-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cxkqhx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "DecimalLatitude is greater than or equal to 52.025441483868",
 "DecimalLatitude is less than or equal to 52.0365226364768",
 "DecimalLongitude is greater than or equal to 76.5427013597445",
 "DecimalLongitude is less than or equal to 76.5606672197122",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0201646-230224095556074/datasets/export for details.
DOI: 10.15468/dl.dtk65n
title: Occurrence Download

description: A dataset containing 19797 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ortalis columbiana Hellmayr, 1906, Ortalis columbiana Hellmayr, 1906, Ortalis columbiana Hellmayr, 1906)",
 "DecimalLatitude is greater than or equal to -14",
 "DecimalLatitude is less than or equal to 13",
 "DecimalLongitude is greater than or equal to -83",
 "DecimalLongitude is less than or equal to -60"
 ]
}

 The dataset includes 19797 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067085-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.