cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4733059.v1
title: The role of forest resources in income inequality in Cameroon

description: The present study focuses on forest incomes of households around forest concessions in Cameroon. The contributions of forest income to the economy and well-being of households were measured and the explanatory factors for heterogeneity determined. We used the Gini index to evaluate the distribution of household forest incomes and their influence on well-being and income inequality amongst forest-dependent households. Three TOBIT econometric models with sample selection were estimated to identify factors that influence the level of each source of forest income. Results from our analysis show that forest contributes on average 38% of total annual household income with 19, 13 and 6% from illegal logging, hunting and non-timber forest products (NTFPs) of vegetal origin, respectively. Forest income overall contributes in increasing disparities among people by 3%. Income from illegal logging was found to be a major source of income inequality while other forest income sources such as NTFPs and hunting slightly reduced income inequality. Access to villages and the amount of agricultural income were the main factors that explained the differences in forest income.
DOI: 10.6084/m9.figshare.4733023
title: Model and data.xlsx

description: Model and data for the scientific manuscript: <i>The sensitivity of a cohort study on acrylamide and the risk of cancer: using a simulation approach to evaluate the likelihood of a significant effect. </i>Method and materials are described in the manuscript. The model is build in Microsoft Excel using @Risk version 6 (Palisade Cooperation) as an add-in. The model can be view without @Risk, however to perform simulations, @Risk needs to be available. <br>
DOI: 10.6084/m9.figshare.4733056.v1
title: cafe joris le retour

description: les données de joris sur l'influence de la chémocyanine sur le métabolisme de Frankianstein.<br>
DOI: 10.6084/m9.figshare.4733020
title: Women's child abuse, mental ill health and IPV

description: Data from a household survey with a representative sample of women from Gauteng Province of South Africa in 2010.
DOI: 10.6084/m9.figshare.4733023.v1
title: Model and data.xlsx

description: Model and data for the scientific manuscript: <i>The sensitivity of a cohort study on acrylamide and the risk of cancer: using a simulation approach to evaluate the likelihood of a significant effect. </i>Method and materials are described in the manuscript. The model is build in Microsoft Excel using @Risk version 6 (Palisade Cooperation) as an add-in. The model can be view without @Risk, however to perform simulations, @Risk needs to be available. <br>
DOI: 10.6084/m9.figshare.4733026
title: Memory scrutinized through electrical brain stimulation: a review of 80 years of experiential phenomena (Curot et al. 2017).

description: Electrical Brain Stimulations (EBS) sometimes induce reminiscences, but it is largely unknown what type of memories they can trigger. We reviewed 80 years of literature on reminiscences induced by EBS and added our own database. This database includes all these reminiscences. We classified them according to modern conceptions of memory. <br><br>You can find the results of our analyses in our article (see reference below). We demonstrated that EBS mostly induced poorly contextualized and detailed memories. This overrepresentation of vaguely contextualized memories fits with the dynamic and progressive semantisation of episodic memories. The location of EBS influences the qualitative nature of induced memories suggesting that memory may be activated in a predictable manner. <br><br><br>This database is regularly updated (last update - september 2019).<br><br><br>This database is provided for research purpose. If you would like to add any information, or remove information for copyright reasons, please send an email at jonathan.curot@cnrs.fr<br><br>If you use this database, please cite our article:<br>Curot, J., Busigny, T., Valton, L., Denuelle, M., Vignal, J.P., Maillard, L., Chauvel, P., Pariente, J., Trebuchon, A., Bartolomei, F., et al. (2017). Memory scrutinized through electrical brain stimulation: A review of 80 years of experiential phenomena. <i>Neuroscience & Biobehavioral Reviews</i>. <i>78</i>, 161–177.https://doi.org/10.1016/j.neubiorev.2017.04.018<br>Other details can also be found in:Curot, J., Valton, L., Denuelle, M., Vignal, J. P., Maillard, L., Pariente, J., ... & Barbeau, E. J. (2018). Déjà-rêvé: Prior dreams induced by direct electrical brain stimulation. <i>Brain stimulation</i>, <i>11</i>(4), 875-885.https://doi.org/10.1016/j.brs.2018.02.016<i> </i><br><br><br>
DOI: 10.7795/720.20200515
title: Long Slender Piezo-Resistive Silicon Microprobes for Fast Measurements of Roughness and Mechanical Properties inside Micro-Holes with Diameters below 100 µm

description: During the past decade, piezo-resistive cantilever type silicon microprobes for high-speed roughness measurements inside high-aspect-ratio microstructures, like injection nozzles or critical gas nozzles have been developed. This article summarizes their metrological properties for fast roughness and shape measurements including noise, damping, tip form, tip wear, and probing forces and presents the ﬁrst results on the measurement of mechanical surface parameters. Due to the small mass of the cantilever microprobes, roughness measurements at very high traverse speeds up to 15 mm/s are possible. At these high scanning speeds, considerable wear of the integrated silicon tips was observed in the past. In this paper, a new tip-testing artefact with rectangular grooves of different width was used to measure this wear and to measure the tip shape, which is needed for morphological ﬁltering of the measured proﬁles and, thus, for accurate form measurements. To reduce tip wear, the integrated silicon tips were replaced by low-wear spherical diamond tips of a 2 µm radius. Currently, a compact microprobe device with an integrated feed-unit is being developed for high-speed roughness measurements on manufacturing machines. First measurements on sinusoidal artefacts were carried out successfully. Moreover, the ﬁrst measurements of the elastic modulus of a polymer surface applying the contact resonance measurement principle are presented, which indicates the high potential of these microprobes for simultaneous high-speed roughness and mechanical parameter measurements.
DOI: 10.7795/720.20200625
title: Good Practice Guide on Making Rectangular Waveguide Connections at Frequencies above 100 GHz - Measurement data

description: This dataset contains the results from test measurements used for the document "Good Practice Guide on Making Rectangular Waveguide Connections at Frequencies above 100 GHz" (DOI: 10.7795/530.20190805).
description: The data is saved in subfolders with the names of the documents figures 8 to 15. A PDF copy of each figure is included. The data format of the scattering parameter measurements is either ASCII (TOUCHSTONE or TXT files) or SDATB. Together with the GPG, the file names and the names of the subfolders, the files are self-explanatory. If additional information is required (e.g. which data column in a TXT file), this is given in an information file INFO.TXT.
DOI: 10.6084/m9.figshare.4733011
title: Supplementary Material for: Redistribution of NMDA Receptors in Estrogen-Receptor-β-Containing Paraventricular Hypothalamic Neurons following Slow-Pressor Angiotensin II Hypertension in Female Mice with Accelerated Ovarian Failure

description: Hypertension in male and aging female rodents is associated with glutamate-dependent plasticity in the hypothalamus, but existing models have failed to capture distinct transitional menopausal phases that could have a significant impact on the synaptic plasticity and emergent hypertension. In rodents, accelerated ovarian failure (AOF) induced by systemic injection of 4-vinylcyclohexane diepoxide mimics the estrogen fluctuations seen in human menopause including the perimenopause transition (peri-AOF) and postmenopause (post-AOF). Thus, we used the mouse AOF model to determine the impact of slow-pressor angiotensin II (AngII) administration on blood pressure and on the subcellular distribution of obligatory N-methyl-D-aspartate (NMDA) receptor GluN1 subunits in the paraventricular hypothalamic nucleus (PVN), a key estrogen-responsive cardiovascular regulatory area. Estrogen-sensitive neuronal profiles were identified in mice expressing enhanced green fluorescent protein under the promoter for estrogen receptor (ER) β, a major ER in the PVN. Slow-pressor AngII increased arterial blood pressure in mice at peri- and post-AOF time points. In control oil-injected (nonhypertensive) mice, AngII decreased the total number of GluN1 in ERβ-containing PVN dendrites. In contrast, AngII resulted in a reapportionment of GluN1 from the cytoplasm to the plasma membrane of ERβ-containing PVN dendrites in peri-AOF mice. Moreover, in post-AOF mice, AngII increased total GluN1, dendritic size and radical production in ERβ-containing neurons. These results indicate that unique patterns of hypothalamic glutamate receptor plasticity and dendritic structure accompany the elevated blood pressure in peri- and post-AOF time points. Our findings suggest the possibility that distinct neurobiological processes are associated with the increased blood pressure during perimenopausal and postmenopausal periods.
DOI: 10.6084/m9.figshare.4733014
title: BIM adoption by public facility agencies: impacts on occupant value

description: Many governments have begun to demand that large public facility agencies adopt and implement building information modelling (BIM) in their business processes. Some have published BIM guides. Most of these are technical specifications that are useful at the project level, but they provide no support for the organization-level adoption effort. On the basis of a literature review, action research and case studies of five large UK government facility agencies, a BIM adoption impact map (BIM AIM) is proposed. It describes a set of possible relationships between the actions taken by public facility agencies, the intermediate outcomes of their actions and the eventual achievement of value for the occupants of the facilities they build. BIM AIM can be used by public facility agencies with a wide variety of construction project types to analyse and visualize the strengths, weaknesses and opportunities in their BIM adoption efforts, potentially enabling them to focus on social impacts and outcomes rather than on the technological or management actions that intermediate stakeholders promote.
DOI: 10.6084/m9.figshare.4733014.v1
title: BIM adoption by public facility agencies: impacts on occupant value

description: Many governments have begun to demand that large public facility agencies adopt and implement building information modelling (BIM) in their business processes. Some have published BIM guides. Most of these are technical specifications that are useful at the project level, but they provide no support for the organization-level adoption effort. On the basis of a literature review, action research and case studies of five large UK government facility agencies, a BIM adoption impact map (BIM AIM) is proposed. It describes a set of possible relationships between the actions taken by public facility agencies, the intermediate outcomes of their actions and the eventual achievement of value for the occupants of the facilities they build. BIM AIM can be used by public facility agencies with a wide variety of construction project types to analyse and visualize the strengths, weaknesses and opportunities in their BIM adoption efforts, potentially enabling them to focus on social impacts and outcomes rather than on the technological or management actions that intermediate stakeholders promote.
DOI: 10.6084/m9.figshare.4732972
title: Constraints on convergence: hydrophobic hind legs allow some male pollinator fig wasps early access to submerged females

description: Pollinator fig wasps (Hymenoptera: Agaonidae) display numerous adaptations linked to their obligate association with fig trees (<i>Ficus</i>). <i>Ceratosolen</i> fig wasps pollinate figs that often fill temporarily with liquid, and one clade has males with unusually long hind legs. We investigated their morphology and behaviour. Scanning electron microscopy (SEM) revealed that the cuticle of their hind legs is highly modified and covered with numerous hydrophobic setae and microtrichia that can prevent blockage of the wasps’ large propodeal spiracles by liquids. In deep liquid, the males floated on the surface, but when only a thin layer of liquid was present, the legs allowed males to access females without the risk of drowning. Access to females was facilitated by an air bubble that forms between the hind legs and maintains a column of air between the spiracles and the centre of the figs. Sexual selection should favour males that can gain earlier access to mates, and the modified legs represent an adaptation to achieve this. Convergent adaptations are known in some unrelated non-pollinating fig wasps that develop in similar liquid-filled figs, but these species have enlarged hydrophobic peritremata at the ends of their metasoma to protect the spiracles located there. Unlike non-pollinating fig wasps, pollinator males need to insert their metasoma deep into females’ galls during mating. This difference in mating behaviour has constrained the extent of convergence.
DOI: 10.6084/m9.figshare.4732972.v1
title: Constraints on convergence: hydrophobic hind legs allow some male pollinator fig wasps early access to submerged females

description: Pollinator fig wasps (Hymenoptera: Agaonidae) display numerous adaptations linked to their obligate association with fig trees (<i>Ficus</i>). <i>Ceratosolen</i> fig wasps pollinate figs that often fill temporarily with liquid, and one clade has males with unusually long hind legs. We investigated their morphology and behaviour. Scanning electron microscopy (SEM) revealed that the cuticle of their hind legs is highly modified and covered with numerous hydrophobic setae and microtrichia that can prevent blockage of the wasps’ large propodeal spiracles by liquids. In deep liquid, the males floated on the surface, but when only a thin layer of liquid was present, the legs allowed males to access females without the risk of drowning. Access to females was facilitated by an air bubble that forms between the hind legs and maintains a column of air between the spiracles and the centre of the figs. Sexual selection should favour males that can gain earlier access to mates, and the modified legs represent an adaptation to achieve this. Convergent adaptations are known in some unrelated non-pollinating fig wasps that develop in similar liquid-filled figs, but these species have enlarged hydrophobic peritremata at the ends of their metasoma to protect the spiracles located there. Unlike non-pollinating fig wasps, pollinator males need to insert their metasoma deep into females’ galls during mating. This difference in mating behaviour has constrained the extent of convergence.
DOI: 10.6084/m9.figshare.4732942
title: qPCR sample template

description: Sample qPCR dataset
DOI: 10.6084/m9.figshare.4732921
title: Pairwise_Matrices_&_AHP_weights.xlsx

description: The human vulnerability indicators in social and physical dimensions finalized by a Delphi study. We use AHP method for giving weight to the determined indicators and then we entered data in to Super Decision software and the output is the attached file in the format of excel. <br>
DOI: 10.6084/m9.figshare.4732930
title: chua_drum.m

description: Sound synthesized by chaotic system
DOI: 10.6084/m9.figshare.4732921.v1
title: Pairwise_Matrices_&_AHP_weights.xlsx

description: The human vulnerability indicators in social and physical dimensions finalized by a Delphi study. We use AHP method for giving weight to the determined indicators and then we entered data in to Super Decision software and the output is the attached file in the format of excel. <br>
DOI: 10.6084/m9.figshare.4732930.v1
title: chua_drum.m

description: Sound synthesized by chaotic system
DOI: 10.6084/m9.figshare.4731982
title: Data-sharing.zip

description: Data-sharing contains two folders:<br>1) behavioral 1.1) data-MBD: raw response times (sheet 1) and averages over the two cardio-visual stimulations runs (sheet 2). 1.2) data-questionnaire: raw (sheet 1) and standardized (sheet 2) questionnaire scores.<br><br>2) fMRI 2.1) CVS: contrasts images (e.g. conXXXX) and Tmaps (e.g. spmT_XXXX). 2.2) HAT: contrasts images (e.g. conXXXX) and Tmaps (e.g. spmT_XXXX). 2.3) ROI-analysis: beta values of the six brain regions responding to heart awareness and cardio-visual stimulations.
DOI: 10.6084/m9.figshare.4732012
title: Dual kinetic curves in reversible electrochemical systems

description: Figure files for publication in PLoS (2016) on Dual kinetic curves in reversible electrochemical systems. (Each figure in Matlab fig format and each line in the figure exported as separate txt file.)
DOI: 10.6084/m9.figshare.4731982.v1
title: Data-sharing.zip

description: Data-sharing contains two folders:<br>1) behavioral 1.1) data-MBD: raw response times (sheet 1) and averages over the two cardio-visual stimulations runs (sheet 2). 1.2) data-questionnaire: raw (sheet 1) and standardized (sheet 2) questionnaire scores.<br><br>2) fMRI 2.1) CVS: contrasts images (e.g. conXXXX) and Tmaps (e.g. spmT_XXXX). 2.2) HAT: contrasts images (e.g. conXXXX) and Tmaps (e.g. spmT_XXXX). 2.3) ROI-analysis: beta values of the six brain regions responding to heart awareness and cardio-visual stimulations.
DOI: 10.6084/m9.figshare.4732012.v1
title: Dual kinetic curves in reversible electrochemical systems

description: Figure files for publication in PLoS (2016) on Dual kinetic curves in reversible electrochemical systems. (Each figure in Matlab fig format and each line in the figure exported as separate txt file.)
DOI: 10.6084/m9.figshare.4732207.v2
title: Volume 2 nomor 1 2017

description: Kajian pendidikan islam dan kajian Tokoh
DOI: 10.6084/m9.figshare.4731946
title: microdiversity_gene_families.tgz

description: This dataset is a collection of FASTA files that represent nucleotide sequences of the relaxed core single-copy gene families analyzed in my manuscript on the modeling of microbial diversification.<br><br>
DOI: 10.6084/m9.figshare.4731892
title: PBPs (LAO and HisJ) and their dynamics as a function of cis/trans proline isomerization state.

description: Reduced datasets, scripts and full numerical data for the analysis of the effect of cisPRO/transPRO isomerization effect over PBP (LAO/HISJ) function.
DOI: 10.6084/m9.figshare.4730365
title: Contributions of terrestrial organic carbon to northern lake sediments

description: Data of the manuscript entitled: Contributions of terrestrial organic carbon to northern lake sediments.<br>
DOI: 10.6084/m9.figshare.4731850
title: The evolution of venom by co-option of single copy genes

description: The classic model for the evolution of novel gene function is through gene duplication followed by evolution of new function by one copy (neofunctionalization). However, other modes have also been found, such as novel genes arising from non-coding DNA, chimeric fusions, and lateral gene transfers from other organisms. Here we use the rapid turnover of venom genes in parasitoid wasps to study how new gene functions evolve. In contrast to the classic gene duplication model, we find that a common mode of acquisition of new venom genes in parasitoid wasps is co-option of single copy genes from non-venom progenitors. Transcriptome and proteome sequencing reveal that recruitment and loss of venom genes occur primarily by rapid cis-regulatory expression evolution in the venom gland. Loss of venom genes is primarily due to down-regulation of expression in the gland rather than gene death through coding sequence degradation. While the majority of venoms have specialized expression in the venom gland, recent losses of venom function occur primarily among genes that show broader expression in development, suggesting that they can more readily switch functional roles. We propose that co-option of single copy genes may be a common but relatively understudied mechanism of evolution of new gene functions, particularly under conditions of rapid evolutionary change.
DOI: 10.6084/m9.figshare.4730365.v1
title: Contributions of terrestrial organic carbon to northern lake sediments

description: Data of the manuscript entitled: Contributions of terrestrial organic carbon to northern lake sediments.<br>
DOI: 10.6084/m9.figshare.4730302
title: Bayesian Synthetic Likelihood

description: Having the ability to work with complex models can be highly beneficial. However, complex models often have intractable likelihoods, so methods that involve evaluation of the likelihood function are infeasible. In these situations, the benefits of working with likelihood-free methods become apparent. Likelihood-free methods, such as parametric Bayesian indirect likelihood that uses the likelihood of an alternative parametric auxiliary model, have been explored throughout the literature as a viable alternative when the model of interest is complex. One of these methods is called the synthetic likelihood (SL), which uses a multivariate normal approximation of the distribution of a set of summary statistics. This article explores the accuracy and computational efficiency of the Bayesian version of the synthetic likelihood (BSL) approach in comparison to a competitor known as approximate Bayesian computation (ABC) and its sensitivity to its tuning parameters and assumptions. We relate BSL to pseudo-marginal methods and propose to use an alternative SL that uses an unbiased estimator of the SL, when the summary statistics have a multivariate normal distribution. Several applications of varying complexity are considered to illustrate the findings of this article. Supplemental materials are available online. Computer code for implementing the methods on all examples is available at <i>https://github.com/cdrovandi/Bayesian-Synthetic-Likelihood</i>.
DOI: 10.6084/m9.figshare.4730299
title: Regularized Estimation of Piecewise Constant Gaussian Graphical Models: The Group-Fused Graphical Lasso

description: The time-evolving precision matrix of a piecewise-constant Gaussian graphical model encodes the dynamic conditional dependency structure of a multivariate time-series. Traditionally, graphical models are estimated under the assumption that data are drawn identically from a generating distribution. Introducing sparsity and sparse-difference inducing priors, we relax these assumptions and propose a novel regularized M-estimator to jointly estimate both the graph and changepoint structure. The resulting estimator possesses the ability to therefore favor sparse dependency structures and/or smoothly evolving graph structures, as required. Moreover, our approach extends current methods to allow estimation of changepoints that are grouped across multiple dependencies in a system. An efficient algorithm for estimating structure is proposed. We study the empirical recovery properties in a synthetic setting. The qualitative effect of grouped changepoint estimation is then demonstrated by applying the method on a genetic time-course dataset. Supplementary material for this article is available online.