cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.x75mzk
title: Occurrence Download

description: A dataset containing 327 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Malouetia bequaertiana Woodson"
 ]
}

 The dataset includes 327 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052318-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6cnzwg
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mesembryanthemum crassicaule Haw."
 ]
}

 The dataset includes 24 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052319-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kb9xyq
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melhania melanoxylon (Sol. ex Sims) R.Br."
 ]
}

 The dataset includes 24 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052320-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6fn8zh
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maesa forbesii Mez"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052321-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.drqmzk
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Malouetia heudelotii A.DC."
 ]
}

 The dataset includes 68 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052322-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10892780
title: Insights from GRBs for optical follow-up of gravitational-wave counterparts

description: Public data release for the paper "Insights from GRBs for optical follow-up of gravitational-wave counterparts". Includes afterglow lightcurves, skymaps from GW simulations, and scripts for using the scheduler and making figures.
DOI: 10.5281/zenodo.10892781
title: Insights from GRBs for optical follow-up of gravitational-wave counterparts

description: Public data release for the paper "Insights from GRBs for optical follow-up of gravitational-wave counterparts". Includes afterglow lightcurves, skymaps from GW simulations, and scripts for using the scheduler and making figures.
DOI: 10.15468/dl.u866ds
title: Occurrence Download

description: A dataset containing 255 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mesembryanthemum cryptanthum Hook.fil."
 ]
}

 The dataset includes 255 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052323-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x4x4hg
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maesa fruticosa Gibbs"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052324-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.usqfg6
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melhania menafe Arènes"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052325-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bbpa4z
title: Occurrence Download

description: A dataset containing 2133 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bos gaurus C.H.Smith, 1827"
 ]
}

 The dataset includes 2133 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052326-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggwdg2
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Malouetia mildbraedii (Gilg & Stapf) J.Ploeg"
 ]
}

 The dataset includes 124 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052327-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/3v3q-p259
title: Synchrotron XFM data for Barnes_14304 (March 2019)

description: The Ni-Cu-(PGE) deposits of the Norilsk area in Siberia are some of the world’s most valuable ores, and played a role in the greatest mass extinction in Earth history. A unique feature is the presence of low-S, high PGE mineralisation. Based on previous synchrotron experiments we have hypothesized that these unusual ores may have formed by “bubble-rafting” of sulfide droplets on gas bubbles, and that the high PGE/S could be related to loss of S to the vapour phase during degassing. We will test this model by imaging a remarkable new suite of samples from recent exploration drilling.
DOI: 10.15468/dl.jez5mk
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Begonia gigabracteata Hong Z.Li & H.Ma"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052330-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2zpx7c
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maesa gaudichaudii A.DC."
 ]
}

 The dataset includes 62 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052329-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mjn34m
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melhania minutissima Hochr."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052331-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vxzx8e
title: Occurrence Download

description: A dataset containing 13066 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mesembryanthemum crystallinum L."
 ]
}

 The dataset includes 13066 records from 262 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052328-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tc25a3
title: Occurrence Download

description: A dataset containing 6156 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Malpighia glabra L."
 ]
}

 The dataset includes 6156 records from 336 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052332-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.23794
title: Research data supporting "To copy or not to copy: the influence of instructions in design fixation experiments"

description: This is a ZIP archive file (.zip) containing both portable document format (.pdf) and comma-separated values (.csv) files: &gt; The pdf file contains the annotated sketches that participants generated during an ideation session. This file type allows the non-digital data to be saved in a digital document format. The ideas from each group are stored into different files, whose naming corresponds to the experimental conditions reported in the publication (To copy or not to copy: the influence of instructions in design inspiration and fixation experiments). &gt; The csv file contains the evaluation for all ideas generated by all participants in the experiment. This file type allows data to be saved in a table structured format. In the table, the column headings are self-explanatory, provided you also have the corresponding publication (To copy or not to copy: the influence of instructions in design inspiration and fixation experiments) as a reference. The data was collected in January 2015 from 168 undergraduate students in engineering at the University of Cambridge, UK. Participation in the experiment was part of the students’ education, and was aimed at collecting data that could later be used to introduce them to the concept of design fixation. No demographic data was collected from the participants, but as first year undergraduate students they were broadly similar in age and design experience, drawn from a cohort with a male-female ratio of 3:1. No consent form was required for this experiment.
description: This research data supports “To copy or not to copy: the influence of instructions in design fixation experiments” which will be published in “DCC16: Design Computing and Cognition 2016”. Therefore, this record will be updated with publication details.
description: This work was supported by the EPSRC [grant number EP/K008196/1] and CAPES Foundation [grant number BEX 11468/13-0].
DOI: 10.5285/6ffa3d36-a521-44f7-9e12-213458dafce3
title: Stable isotope data from the Ferrigno ice core (F10), Bryan Coast, West Antarctica

description: This dataset provides a 308 year (1702-2009) deuterium isotope record from the Ferrigno 2010 (F10) ice core. The core was drilled on the Bryan Coast in Ellsworth Land, West Antarctica, during the austral summer 2010/11. The record was measured using a Los Gatos Liquid Water Isotope Analyser at 5cm resolution, corresponding to ~14 samples per year, with annual averages calculated for January-December.
DOI: 10.5441/001/1.3gc013f3/4
title: Post-fledging movements of common mergansers (Mergus merganser) in Alaska (data from Pearce and Petersen 2009)-raw-argos-ds

description: Pearce JM, Petersen MR (2009) Post-fledging movements of juvenile common mergansers (Mergus merganser) in Alaska as inferred by satellite telemetry. Waterbirds 32: 133–137. doi:10.1675/063.032.0116
description: We implanted satellite transmitters into eight juvenile Common Mergansers to investigate post-fledging movements from their natal river in southcentral Alaska. Subsequently, they moved widely throughout portions of western and southcentral Alaska up to 750 km from their natal areas during fall and winter months. Transmitters of two birds (one male and one female) continued to send location data into their second year and allowed us to determine the location and timing of the flightless molt period for each bird. Overall, our data suggest that juvenile Common Mergansers range widely immediately after fledging, that second year males and females may differ in their movement patterns, and that these movements have implications for population genetic structure of this species.
DOI: 10.5441/001/1.3gc013f3/5
title: Post-fledging movements of common mergansers (Mergus merganser) in Alaska (data from Pearce and Petersen 2009)-sensor-messages

description: Pearce JM, Petersen MR (2009) Post-fledging movements of juvenile common mergansers (Mergus merganser) in Alaska as inferred by satellite telemetry. Waterbirds 32: 133–137. doi:10.1675/063.032.0116
description: We implanted satellite transmitters into eight juvenile Common Mergansers to investigate post-fledging movements from their natal river in southcentral Alaska. Subsequently, they moved widely throughout portions of western and southcentral Alaska up to 750 km from their natal areas during fall and winter months. Transmitters of two birds (one male and one female) continued to send location data into their second year and allowed us to determine the location and timing of the flightless molt period for each bird. Overall, our data suggest that juvenile Common Mergansers range widely immediately after fledging, that second year males and females may differ in their movement patterns, and that these movements have implications for population genetic structure of this species.
DOI: 10.26036/cnphis0000107
title: Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the Gut Microbiome

description: The gut microbiota has been typically viewed as an environmental factor for human health. Twins are well suited for investigating the concordance of their gut microbiomes and decomposing genetic and environmental influences. However, existing twin studies utilizing metagenomic shotgun sequencing have included only a few samples. Here, we sequenced fecal samples from 250 adult twins in the TwinsUK registry and constructed a comprehensive gut microbial reference gene catalog. We demonstrate heritability of many microbial taxa and functional modules in the gut microbiome, including those associated with diseases. Moreover, we identified 8 million SNPs in the gut microbiome and observe a high similarity in microbiome SNPs between twins that slowly decreases after decades of living apart. The results shed new light on the genetic and environmental influences on the composition and function of the gut microbiome that could relate to risk of complex diseases.
DOI: 10.26036/cnphis0000252
title: ccRCC_RRBS

description: We sequenced the RRBS for 1 ccRCC patient
DOI: 10.26036/cnphis0000262
title: Vigna angularis Resequencing

description: We did the genomic resequencing of Vigna angularis.
DOI: 10.26036/cnphis0000299
title: Homo sapiens Transcriptome or Gene expression.SRP069159

description: To test the difference between Abmsc and Fbmsc
DOI: 10.26036/cnphis0001976
title: Anas platyrhynchos Transcriptome or Gene expression

description: Anas platyrhynchos gene expression response to flu infection
DOI: 10.26036/cnphis0002295
title: Salmonella enterica subsp. enterica Serovar Typhimurium isolate:22 different isolates Genome sequencing and assembly

description: Sequencing of Salmonella Typhimurium isolates, which have caused a persistent infection in humans
DOI: 10.26036/cnphis0002349
title: Sequencing of individual males from heterozygous females

description: Sequencing of individual males from heterozygous females to identify sites of crossing over and non-crossover gene conversion. Heterozygous females were crossed to either w[1118] males or Canton-S males.
DOI: 10.26036/cnphis0002361
title: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Raw sequence reads

description: Strains containing costly synonymous mutations in rpsT were evolved for 200 generations in LB to compensate for the growth defects. Single clones from the evolved populations were whole genome sequenced.
DOI: 10.26036/cnphis0002366
title: Genome Resequencing Identifies Unique Adaptations of Tibetan Chickens to Hypoxia and High-dose Ultraviolet Radiation in High-altitude Environments

description: Tibetan chickens exhibit specific adaptations to high-altitude conditions compared with their lowland counterparts. To illustrate the genetic mechanisms of such adaptations in highland chickens, the genomes of four highland and four lowland chicken populations were resequenced. Our results showed that genes under positive selection in highland populations were related to cardiovascular and respiratory system development, DNA repair, response to radiation, inflammation, and immune response, indicating a strong adaptation to oxygen scarcity and high-intensity solar radiation. The distribution of allele frequencies of non-synonymous single nucleotide polymorphisms between highland and lowland populations was also analyzed by chi-square test. The results showed that several differentially distributed genes with missense mutations were enriched in several functional categories, especially in blood vessel development, which were related to adaptations to hypoxia and intense radiation. RNA sequencing also revealed that several differentially expressed genes were enriched in gene ontology terms related to blood vessel and respiratory system development. Additionally, an evident admixture found in Tibetan chickens suggested a history of introgression from lowland gene pools. Overall, our data provided new insights into the unique adaptation of highland animals to extreme environments. Overall design: The genomes from eight chicken populations were resequenced by Illumina Hiseq 2000 to identify positively selected genes in highland populations and RNA-Seq of four chicken populations was also performed for differential expressed genes analysis. This series contains only the RNA-seq data.
DOI: 10.26036/cnphis0002381
title: RAD (Restriction site Associated DNA) for de novo sequencing of <i> Diatraea saccharalis <i></i>.</i>

description: The aim of this study was to develop genomic resources and molecular markers for Diatraea saccharalis (Fabr.) through paired-end RADseq protocol to study migration and host-adaptation as consequence of human-mediated landscape changes.
DOI: 10.26036/cnphis0002395
title: GenomeTrakr project: Alaska State Public Health Laboratory-Anchorage

description: Whole genome sequencing of cultured Salmonella Enterica as part of the US Food and Drug Administration surveillance project for the rapid detection of outbreaks of foodborne illnesses.
DOI: 10.26036/cnphis0002398
title: GenomeTrakr Project: Florida Department of Agriculture

description: Whole genome sequencing of cultured Salmonella as part of the US Food and Drug Administration surveillance project for the rapid detection of foodborne contamination events.
DOI: 10.26036/cnphis0002458
title: Pelodiscus sinensis Genome sequencing

description: Genome sequencing of the Chinese soft shelled turtle.
DOI: 10.26036/cnphis0002510
title: Trachelipus rathkii Raw sequence reads

description: Low-coverage whole-genome sequencing and transcriptome sequencing of Trachelipus rathkei
DOI: 10.26036/cnphis0002522
title: WGS data from cetartiodactyla

description: Whole genome sequences from cetartiodactyla species can be mapped to reference genomes of cattle and sheep for the purposes of determining the likely ancestral alleles at variant sites.
DOI: 10.26036/cnphis0002550
title: Limulus polyphemus Genome sequencing and assembly

description: In this study we developed a draft genomic assembly for Limulus polyphemus.
DOI: 10.6084/m9.figshare.12981335
title: A dataset of host range of the viruses infecting vertebrates using the International Committee on Taxonomy of Viruses 2018 Master Species List

description: We developed a database of the most up-to-date data of the International Committee on Taxonomy of Viruses (ICTV) virus species (n=4958) and identified 1479 vertebrate virus species and their host ranges. We categorised 4958 viruses, of which 2010 were Animalia viruses including 1479 viruses infecting vertebrate hosts. Vertebrate viruses were further classified as human (n=404), bat (n=219), rodent (n=186), non-human primate (n=206) and livestock (n=267) viruses.
DOI: 10.6084/m9.figshare.12471461.v8
title: Knight et al, unpublished.

description: <b>1. </b>Global MLST phylogeny (manuscript Fig. 2)<b><br></b><b><br></b><b>2. </b>BEAST tree file<b> </b>(manuscript Fig. 4)<br><b></b><b><br></b><b>3. </b>BactDating tree file (manuscript Fig. 4)<b><br></b><b>4. </b>Supplementary Data<b> </b>(Tables S1-15 and Figures S1-5)<b><br></b>
DOI: 10.5517/ccdc.csd.cc22hjgl
title: CCDC 1921549: Experimental Crystal Structure Determination

description: Related Article: Magnus R. Buchner, Sudip Pan, Christina Poggel, Nils Spang, Matthias Müller, Gernot Frenking, Jörg Sundermeyer|2020|Organometallics|39|3224|doi:10.1021/acs.organomet.0c00434
DOI: 10.25505/fiz.icsd.cc257rgn
title: CSD 2003451: Experimental Crystal Structure Determination

description: Related Article: Petr Doležal, Elen Duverger-Nédellec, Zuzana Mičková, Petr Proschek, Ksenia Illková, Stanislav Daniš, Kristína Bartha∥, Pavel Javorský|2020|Inorg.Chem.|59|12263|doi:10.1021/acs.inorgchem.0c01292
DOI: 10.6084/m9.figshare.12981380
title: Series elasticity facilitates safe plantarflexor muscle-tendon shock absorption during perturbed human hopping

description: In our everyday lives, we negotiate complex environments and unpredictable terrain. Yet much of our knowledge regarding locomotion has come from studies conducted under steady-state conditions. We have previously shown that humans rely on the ankle joint to absorb energy and recover from perturbations, however, the muscle-tendon (MTU) behaviour and motor control strategies that accompany these joint-level responses are not yet understood. In this study, we determined how neuromuscular control and plantarflexor MTU dynamics are modulated to maintain stability during unexpected vertical perturbations. Participants performed steady-state hopping andat an unknown time, we elicited an unexpected perturbation via rapid removal of a platform. In addition to kinematics and kinetics, we measured gastrocnemius and soleus muscle activations using electromyography and <i>in vivo</i>fascicle dynamics using B-mode ultrasound. Here, we show that an unexpecteddrop in ground height introduces an automatic phase shift in the timing of plantarflexor muscle activity relative to MTU length changes. This altered timing initiates a cascade of responses including increased MTU and fascicle length changes and increased muscle forces, when taken together enables the plantarflexors to effectively dissipate energy. Our results also show another mechanism, whereby increased co-activation of the plantar- and dorsiflexors enables shortening of the plantarflexor fascicles prior to ground contact. This co-activation improves the capacity of the plantarflexors to rapidly absorb energy upon ground contact, and may also aid in the avoidance of potentially damaging muscle strains. Our study provides novel insight into how humans alter their neural control to modulate <i>in vivo</i>muscle-tendon interaction dynamics in response to unexpected perturbations. These data provide essential insight to help guide design of lower-limb assistive devices that can perform within varied and unpredictable environments. <br>