cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.t9p249
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sagamichthys schnakenbecki (Krefft, 1953)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-0.0352 19.8496,-9.0352 19.8496,-9.0352 10.8496,-0.0352 10.8496,-0.0352 19.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013213-250525065834625/datasets/export for details.
DOI: 10.17605/osf.io/er72q
title: Nutritional counseling based on Mindful Eating for the eating behavior of people living with overweight and obesity: a randomized clinical trial.

description: This project evaluated the effect of a counseling approach based on Mindful Eating on the eating behavior of individuals living with overweight and obesity.
DOI: 10.26180/5cbff3e6e4553
title: Scholarly Communication Survey

description: We obtained permission from Bianca Kramer and Jeroen Bosman, Utrecht University Library, Netherlands to use their survey published in F1000Research (2016) in our study. The survey was adapted to suit our local environment and created using the Qualtrics survey tool.
DOI: 10.6084/m9.figshare.13194095.v2
title: European Primary Forest Database

description: The European Primary Forest Database is a curated collection of (sub)-national and regional datasets on the distribution of primary forests in Europe. It contains geographical (GIS) data (point, polygons) on the location and boundaries of documented primary and old-growth forests in Europe<br>
DOI: 10.6084/m9.figshare.14258105.v1
title: Supplementary Material for: Robustness of In-Laboratory and Daily-Life Gait Speed Measures over One Year in High Functioning 61- to 70-Year-Old Adults

description: <b><i>Introduction:</i></b> Gait speed is a simple and safe measure with strong predictive value for negative health outcomes in clinical practice, yet in-laboratory gait speed seems not representative for daily-life gait speed. This study aimed to investigate the interrelation between and robustness of in-laboratory and daily-life gait speed measures over 12 months in 61- to 70-year-old adults. <b><i>Methods:</i></b> Gait speed was assessed in laboratory through standardized stopwatch tests and in daily life by 7 days of trunk accelerometry in the PreventIT cohort, at baseline, and after 6 and 12 months. The interrelation was investigated using Pearson’s correlations between gait speed measures at each time point. For robustness, changes over time and variance components were assessed by ANOVA and measurement agreement over time by Bland-Altman analyses. <b><i>Results:</i></b> Included were 189 participants (median age 67 years [interquartile range: 64–68], 52.2% females). In-laboratory and daily-life gait speed measures showed low correlations (Pearson’s <i>r</i> = 0.045–0.455) at each time point. Moreover, both in-laboratory and daily-life gait speed measures appeared robust over time, with comparable and smaller within-subject than between-subject variance (range 0.001–0.095 m/s and 0.032–0.397 m/s, respectively) and minimal differences between measurements over time (Bland-Altman) with wide limits of agreement (standard deviation of mean difference range: 0.12–0.34 m/s). <b><i>Discussion/Conclusion:</i></b> In-laboratory and daily-life gait speed measures show robust assessments of gait speed over 12 months and are distinct constructs in this population of high-functioning adults. This suggests that (a combination of) both measures may have added value in predicting health outcomes.
DOI: 10.6084/m9.figshare.19808407.v4
title: China's Gridded Manufacturing Dataset

description: The growth of the manufacturing industry is the engine of rapid economic growth in developing regions. Characterizing the geographical distribution of manufacturing firms is critically important for scientists and policymakers. However, data on the manufacturing industry used in previous studies either have a low spatial resolution (or fuzzy classification) or high-resolution information is lacking. Here, we propose a map point-of-interest classification method based on machine learning technology and build a dataset of the distribution of Chinese manufacturing firms called the Gridded Manufacturing Dataset. This dataset includes the number and type of manufacturing firms at a 0.01° latitude by 0.01° longitude scale. It includes all manufacturing firms (classified into seven categories) in China in 2015 (4.40 million) and 2019 (6.01 million). This dataset can be used to characterize temporal and spatial patterns in the distribution of manufacturing firms as well as reveal the mechanisms underlying the development of the manufacturing industry and changes in regional economic policies.
DOI: 10.17632/h4tkyd6vwj
title: Host-dependent resistance of Group A Streptococcus to sulfamethoxazole mediated by a horizontally-acquired reduced folate transporter - MS and NMR data

description: Metabolic profiling of MH-Bm and MH-Ox media. The differences in the susceptibility of TB08-2-14 to SXT on MHF-Ox and MHF-Bm media suggest differences in the composition of MH media from these different suppliers. To investigate this, we first examined the composition of MH base medium from each supplier using nuclear magnetic resonance (NMR) spectroscopy, revealing differences in the composition of MH base medium, with the MH-Ox medium containing higher levels of adenine, uracil and TRIS, while the MH-Bm medium contained higher levels of uridine, glucose and an unknown guanine moiety containing compound. However, we were unable to identify any major differences in folate pathway compounds. To further investigate the composition of MH-Ox and MH-Bm, untargeted metabolomics analysis was performed using LC-MS. As with NMR, LC-MS data showed differences in the medium following positive and negative ionisation, but did not detect differences in folate pathway intermediates. Untargeted LC-MS profiling followed by multivariate statistical analysis (principal component analysis (PCA) and orthogonal projections to latent structures discriminant analysis (OPLS-DA) and database peak annotation revealed significant differences in a number of analytes, including higher levels of guanosine, uridine, methionine and peptides Pro-Ile-Ile and Pro-Val-Ile in the MH-Bm medium, with the MH-Ox medium containing higher levels of adenine, uracil, pyrrolidonecarboxylic acid and citric acid. Further comparison of spectra against reference standards for folate pathway intermediates revealed no significant differences other than a slight increase in 5,10-methylene-THF in MH-Bm. Thus, while there were major differences in the gross composition of MH media from each supplier, we were unable to identify substantial differences in the concentration of folic acid or reduced folate derivatives that might explain the relative performance of each media for detecting ThfT-mediated SMX resistance.

1H NMR sample preparation: 1H NMR was performed on a 600 MHz Bruker Avance III HD spectrometer, equipped with a 5 mm BBI probe and fitted with a Bruker SampleCase set to 6 °C. Time domain data were Fourier transformed and processed manually using Bruker TopspinTM 3.6.2 or Bruker TopspinTM 4.1.3 to obtain phase and baseline corrected spectra. 

Standard preparation. Stock solutions were prepared at 1 mg/mL in DMSO, and further diluted to 10 ug/mL in methanol containing 0.1 % butylated hydroxytolunene (BHT) for LC-MS analysis. Sample preparation. Media samples were filtered and either directly injected for the detection of targeted tetrahydrofolic acid metabolites, or diluted 1 in 10 (v/v) with LC-MS grade water for untargeted profiling. Preparation was identical for both methods.
DOI: 10.17632/jdbfy6crpn
title: Results of performing of eight lucid dream deepening techniques by practitioners and R analysis script

description: Results of performing of eight techniques for increasing perception vividness, or deepening techniques (DTs) in lucid dreams (LDs) by practitioners from December 23, 2018, to November 11, 2022. Experimental task Each DT corresponded to a specific task. Volunteers could participate in one or more tasks. A separate LD experience was required to perform each DT. Participants were instructed to initiate LD by any method and immediately perform a DT corresponding to the task without using other techniques that could affect perception vividness. Then, participants were to pay attention to how perception vividness changed. Regardless of the result, participants were allowed to perform each experiment only once before submitting their reports on the website. Also each participant reported which LD induction method they used, all the LD events, the LD termination type, and the number of LDs experienced in their lifetime. Tested DTs This study compared eight DTs: imagining wakefulness, spinning, falling upside down, warming up, verbal command, vibrations, obscene expressions, and palpation. For each DT, except for palpation, tasks were provided in Russian. For palpation DT, the task was presented in English. Statistical analysis Eight DTs correspond to the five principles on which they are based (DT types): sensory, motor, vestibular, emotional, and suggestion types. Sensory - palpation, vibration; Motor - warming up; Vestibular - falling upside down, spinning; Emotional - obscene expressions; Suggestion - imagining wakefulness, verbal command; Rows: 1) DT name - imagining wakefulness, spinning, falling upside down, warming up, verbal command, vibrations, obscene expressions, palpation; 2) DT type - sensory, motor, vestibular, emotional, suggestion; 3) Status yes/no (did the technique lead to an increase in perception vividness in LD) - yes, no, n/a (other or unclear); 4) Status (specific result of DT performing) - same (real) (perception vividness remained at a high level), worked (perception vividness increased without exceeding that experienced during wakefulness), hyper (DT led to perception vividness exceeding that experienced during wakefulness), foul (LD termination), decrease (decrease in perception vividness), same (low) (perception vividness remained at a low level), n/a (other or unclear); 5) Gender (practitioner's gender) - m, w; 6) LDs number (the number of LDs in a practitioner's lifetime) - 1(&lt;4), 2(4-10), 3(11-30), 4(31-100), 5(101-500), 6(&gt;500); 7) Method (LD induction method) - indirect (upon awakening), direct (without sleeping, upon falling asleep, or immediately after falling asleep), ld (becoming conscious during a dream), n/a (other or unclear); 8) End (LD termination type) - force (unintentional natural awakening), dream (unintentionally falling asleep or getting lost in a dream plot), outer (awakening due to external factors), self (intentional awakening), fake (unrecognized false awakening), n/a (other or unclear).
DOI: 10.6084/m9.figshare.12814541.v1
title: Population Genetics Locus typing results in Rwanda

description: Herein ,we first uploaded the biggest Population Genetics Locus typing results in Rwanda. There are 108-plex STRs and 188 SNPs‘ frequency data can be used in forensic statistic.
DOI: 10.6084/m9.figshare.1284620.v3
title: Supplemental material for "Visualization and differential analysis of protein expression data using R"

description: Supplemental material for chapter entitled "Visualization and differential analysis of protein expression data using R". A synthetic 2DE dataset is provided as example, along with the code used to analyse it.
DOI: 10.6084/m9.figshare.25520872.v1
title: Supplementary Table S8 from Association between the gut microbiome and carotenoid plumage phenotype in an avian hybrid zone

description: KEGG pathway information for orthologs associated with plumage scores in admixed individuals
DOI: 10.6084/m9.figshare.25922452.v1
title: SNP imputation

description: Genome-wide association studies and candidate genes networks affecting reproductive traits using Iranian Holstein sequence data
DOI: 10.6084/m9.figshare.3049783.v3
title: A semi-automatic neighborhood rule discovery approach

description: txt files generated from the FME script for further percentage calculation by Python scripts for our case study
DOI: 10.6084/m9.figshare.1455990.v7
title: A Functional Approach to Violent Radicalization. Proposing a Model

description: A paradox in the study of violent radicalization is that while each of the empirical findings can be explained from multiple theories, very few theories can explain a relevant number of these findings simultaneously. In this paper functional behavior assessment is applied to violent radical behavior, trying to find out the factors responsible for its initial learning and subsequent maintenance. Specifically, a radicalization model is proposed, which can explain a wide range of observed phenomena, accommodate apparent exceptions, and obtain testable consequences. It also allows challenging some firmly rooted ideas, as the alleged existence of aggressive influence practices, or brainwashing. Finally, the model is also able to provide valuable predictions for subsequent investigation, such as those related to the reversibility of the process of radicalization.
DOI: 10.6084/m9.figshare.1604892.v1
title: De novo genes in human - Origins of de novo genes in human and chimpanzee

description: GTF with the exonic coordinates of de novo genes in human
DOI: 10.6084/m9.figshare.24431146.v4
title: 2016 Glasser MMP1.0 Cortical Atlases

description: The Glasser et al. group level MMP parcellation map projected into volumetric space using registration fusion. Volumetric space is available for two different standard templates.<br>MNI152NLin6Asym - FSL/HCP "standard" space<br>MNI152NLin2009cAsym - fmriprep's default space.glasser_MNI152NLin[2009c|6]Asym_atlas.nii.gz - probabilistic maps projected to two templates' spaces<br>glasser_atlas_labels.txt - labels of parcels above, line order corresponds to volume order.<br>[lr]h_[bmrk5|paingen]_MNI152NLin[2009c|6]Asym.nii.gz - subject specific parcellations projected in templates' space. One per hemisphere<br>[rl]h.HCP.MMP1 - glasser atlas resampled to fsaverage surfaces<br>methods - informal methods description (but still pretty formal)<br><br>The group MMP surface parcellation was resampled from fs_LR to fsaverage space. Surface to volume mappings were then used to transform the group MMP parcellation from fsaverage space into native T1 space. Finally, transformations from native T1 space to the desired template space were applied to transform parcellations into the desired spaces. Individual participant's projections were used to estimate probability maps for each study separately. The resultant study specific probability maps were averaged. Data from two different studies (N=88 and N=241), are incorporated. fmriprep 20.2.3 was run with the --recon-all flag to produce all necessary spatial transformations.Refer to methods.txt for scanning protocols and participant details.
DOI: 10.6084/m9.figshare.28601810.v1
title: <b>Paleomagnetic constraints on the age of basalts in the Khartoum Basin, </b><b>the eastern branch of </b><b>the West and Central African Rift System, Sudan </b><b>(supplementary data)</b>

description: One of the rare occurrences of volcanism in the eastern branch of the West and Central African Rift System (WCARS) is the quarried basalt outcropping within the Khartoum Basin. However, its age and stratigraphic relationships remain poorly constrained. In this study, we present new paleomagnetic data from basalts at Jebel Et Toriya and Jebel Fiteihab to address this gap. Rock magnetic results suggest magnetite or titanomagnetite as the primary magnetic carriers. Alternating field and thermal demagnetization revealed characteristic remanent magnetizations with mean directions of <i>D</i> = 334.6°, <i>I </i>= -3.7° (<i>k</i> = 19.1, <i>α</i><sub><em>95</em></sub> = 11.4°), corresponding to a virtual geomagnetic pole (VGP) at 59.4°N/ 269.8°E (<i>K</i> = 33.5, <i>A</i><sub><em>95</em></sub> = 8.5°). Tilt correction yielded mean directions of <i>D</i> = 334.5°, <i>I</i> = -19.2° (<i>k</i> = 37.4, <i>α</i><sub><em>95</em></sub> = 8.0°), with a VGP at 54.2°N/ 258.3°E (<i>K</i> = 41.6, <i>A</i><sub><em>95</em></sub> = 7.6°). The VGPs align well with published African Cretaceous paleopoles derived from igneous units and the Mesozoic section of the African apparent polar wander path. The tilt-corrected VGP suggests an age of 138.5 ± 43.5 Ma for the basalt, which indicates a link with the Early Cretaceous (~145–120 Ma) subsurface volcanic rocks reported in the Khartoum Basin. This implies emplacement during the initial rifting phase, probably predating the deposition of the Albian–Cenomanian Omdurman Formation. This challenges the presumed “Tertiary” age for the outcropping volcanic rocks within the WCARS in Sudan and emphasize the need for radiometric dating and further paleomagnetic sampling of associated units to refine their emplacement history. Our results not only contribute to the limited number of paleomagnetic studies conducted in Sudan but also highlight the importance of revisiting conventional stratigraphic classifications in the region. Moreover, the study demonstrates the utility of apparent polar wander-based dating for igneous rocks when integrated with other geological constraints.
DOI: 10.6084/m9.figshare.28696655.v1
title: Composition dataset

description: <b>Background</b><br>The link between education and recovery from cardiovascular diseases is well-established, yet the relationship between the educational attainment of social network members and the development of these conditions remains underexplored. This study examines how the educational composition of social ties correlates with cardiac biomarkers.<b>Methods</b><br>This study utilizes longitudinal observational data from the Korean Social Life, Health, and Aging Project (KSHAP), tracking a prospective cohort of 709 older adults aged 60–95 years over eight years, with surveys conducted in 2011, 2016, and 2019. We analyzed a sociocentric network encompassing an entire village and measured three cardiac biomarkers: BNP, Troponin, and NT-proBNP. Fixed-effects models were employed to reduce unobserved heterogeneity by assessing within-individual changes.<b>Results</b><br>The educational attainment of rural older adults, who typically possess only basic education, shows no association with levels of cardiac biomarkers. In contrast, a higher number of college-educated individuals within one’s social network is negatively associated with all measured biomarkers (BNP: β = -0.23, 95% CI = -0.35 to -0.11; Troponin: β = -0.64, 95% CI = -1.01 to -0.26; NT-proBNP: β = -0.54, 95% CI = -0.92 to -0.15).<b>Conclusions</b><br>The educational attainment of social networks, rather than one’s own, is consistently linked to cardiac biomarkers among less-educated older adults. Enriching social environments with college-educated ties may offer valuable information and stimulation for individuals with basic education, informing effective community-level strategies to prevent cardiac diseases.<b>Keywords: cardiac biomarkers,</b><b> social networks, </b><b>education, educational composition, older adults, CVD</b>
DOI: 10.17632/p75hndpk64
title: TEORI KETERGANTUNGAN

description: Perspektif ketergantungan baru telah diubah beberapa asumsi dasar dari perspektif klasik ketergantungan. Daripada mengamati ketergantungan sebagai proses yang umum, eksternal dan ekonomi yang mengarah ke daerah polarisasi dan keterbelakangan, teori ketergantungan baru sekarang konsep itu sebagai suatu proses yang secara historis tertentu, internal, sosial-politik yang dapat menyebabkan perkembangan dinamis. Dengan demikian ketergantungan perspektif baru telah mengedepankan konsep asli yang banyak, pengembangan bergantung pada keterkaitan; negara otoriter birokrasi; Aliansi Tripel antara negara, lokal modal dan modal internasional; dan ketergantungan dinamis konsep-konsep baru ini telah membuka baru penelitian perbatasan dan dipromosikan gelombang baru studi empirik pada situasi mengubah ketergantungan di negara-negara dunia ketiga. Membawa sejarah kembali. Studi ketergantungan yang baru telah membayar lebih banyak perhatian secara historis tertentu situasi ketergantungan daripada lakukan studi klasik ketergantungan.
DOI: 10.6084/m9.figshare.20221362.v1
title: Supplementary Material for: PKCι Is a Promising Prognosis Biomarker and Therapeutic Target for Pancreatic Cancer

description: <b><i>Background:</i></b> As the highest prevalent pancreatic cancer, pancreatic ductal adenocarcinoma (PDAC) ranks the 7th lethal malignancy worldwide. The late diagnosis, chemotherapeutic resistance, and high associated mortality make PDAC a dilemma facing the oncologists. Protein kinase C (PKC) enzymes have been shown to be important in different cancer progression. <b><i>Methods:</i></b> To understand the pattern of PKC enzymes in PDAC, we examined all PKC family member genes expression in PDAC and matched normal tissues. The critical role of PKCι was further investigated in different PDAC cells using cellular and molecular technology. <b><i>Results:</i></b> We found that PRKCI (PKCι) was the most significantly overexpressed PKCs in pancreatic cancer. However, little is known about its role and regulation of oncogenic signaling pathways in pancreatic cancer. In this study, we confirmed the overexpression of PKCι in PDAC, and this high expression was associated with poor prognosis of patients. We proved that knockdown of PKCι by small interfering RNA or shRNA significantly inhibited pancreatic cancer cell growth and migration or invasion. Conversely, PKCι overexpression promoted pancreatic cancer cell growth and migration. Moreover, bioinformatical and technical studies informed the participation of PKCι in regression of apoptosis in PDAC cells, which may be related to the regulation of both PI3K/AKT and Wnt/β-catenin pathways. <b><i>Conclusions:</i></b> Therefore, our results are adding more insight into the importance of PKCι in pancreatic cancer. PKCι induces pancreatic cancer progression through activation of PI3K/AKT and Wnt/β-catenin signaling pathways, which may provide a promising therapeutic target for pancreatic cancer.