cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/j7jdp5n39s
title: Data set for article: Developing a Model for Curve-Fitting a Tree Stem’s  Cross-Sectional Shape and Sapwood–Heartwood Transition in a Polar Diagram System Using Nonlinear Regression

description: This data set contains the raw observed measurement of the circumference of a tree stem’s cross-section and its heartwood–sapwood transition, the transformation of rectangular coordinates (x, y) of the observed data points’ positions into polar coordinates (r, theta), and the nonlinear regression to curve-fit it. The curve-fit models are circle, ellipse, rotated ellipse, and superellipse.
DOI: 10.3535/mx6-yqp-m4r
title: †Orbipora solida Bassler, 1911

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tj6-36l-r1v
title: †Productus Sowerby, 1814

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14558766.v2
title: APG.zip

description: The original image is a Google Earth image of Shouguang City, Shandong Province in 2020 with a resolution of 0.95 m. The original image and the labeled image are one-to-one images of 512*512 size, the format of the original image is three-channel jpg, and the labeled image is single-channel png with pixel values of 0 and 1. The original image is in the imgs folder, and the labeled image is in the labels.<br>
DOI: 10.17632/5y7gm46wdn
title: CESD99 – A new version to represent atomic wave functions in a determinant basis

description: Abstract Determinant expansions of atomic wave functions have several advantages for calculating transition probabilities and cross sections. For instance, such a representation can easily be applied to rather a large number of transition operators and also in order to include rearrangement effects of the bound-state density following the excitation or the decay of an atomic state. In practice, the rearrangement of the electron density is most simply taken into account if the variation of the initial ... Title of program: CESD99 Catalogue Id: ADCB_v3_0 [ADLG] Nature of problem The atomic state functions (ASF) of the structure program GRASP92 [4] are expanded into a determinant basis. Versions of this program held in the CPC repository in Mendeley Data ADCB_v1_0; CESD; 10.1016/0010-4655(95)00088-W ADCB_v2_0; CESD97; 10.1016/S0010-4655(97)00035-0 ADCB_v3_0; CESD99; 10.1016/S0010-4655(99)00455-5 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.3535/1f9-6cp-mkq
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/scb-9kt-pve
title: †Schloenbachia varians (Sowerby, 1817)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/94q-8ef-5av
title: †Homotrypa similis Foord, 1883

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/f1m-mn2-zk0
title: †Coscinotrypa praenuntia (Bassler, 1911)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lf2-n96-z7n
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w7n-3al-wks
title: Assiminea fasciata (Krauss, 1848)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19636749.v1
title: Soil carbon within boreal caribou distribution (modified from source)

description: Soil organic carbon stock (tonnes/ha, 0-100 cm depth) within the boreal caribou distribution, as prepared from the SoilGrids250m dataset. The data were projected, spatially aggregated, and aligned to a standard analysis grid. Raster values ≥ 608 (t/ha) were considered to be a hotspot. Source: Hengl, T., Mendes de Jesus, J., Heuvelink, G. B., Ruiperez Gonzalez, M., Kilibarda, M., Blagotić, A., ... & Kempen, B. (2017). SoilGrids250m: Global gridded soil information based on machine learning. PLoS one, 12(2), e0169748. The SoilGrids dataset is licensed under the Open Data Commons Open Database License (ODbL): https://opendatacommons.org/licenses/odbl/ This license should be used, as opposed to the 'CC BY 4.0' flag on this item.
DOI: 10.17632/7mnpjtfjtb
title: A novel algorithm to optimize classification trees

description: Abstract Breiman et al. (1984) expounded a method called Classification and Regression Trees, or CART, which is of use for nonparametric discrimination and regression. In this paper we present an algorithm which is able to increase the quality of classification trees beyond the quality of trees, which are based on direct evaluation of a splitting criterion. The novel algorithm calculates a large number of possible segments of trees instead of a single tree, and recursively selects the best of these pa... Title of program: MedTree 3.1 Catalogue Id: ADCY_v1_0 Nature of problem The problem is to find best trees of classification for a specific subject to one of two groups [1]. Initially, a set of features for a (sufficient) large number of representative subjects from both groups must be sampled by the user. A good tree is expected to be found if there exist simple schemes of behaviour, or even complex correlations within the input information. The algorithm allows to take into account boundary conditions, to fit the practical purpose of the classification tree. Versions of this program held in the CPC repository in Mendeley Data ADCY_v1_0; MedTree 3.1; 10.1016/0010-4655(96)00002-1 ADCY_v2_0; MedTree 4.1; 10.1016/S0010-4655(96)00123-3 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.3535/1hl-nty-xgd
title: Neoptychites

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pj1-08f-glc
title: †Viviparus diluvianus (Kunth, 1865)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3cf-dpc-jr1
title: Didacna trigonoides (Pallas, 1771)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/s02-nen-d36
title: †Viviparus diluvianus (Kunth, 1865)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/f2v7g9v97j
title: Spatial transcriptomic profiling of coronary endothelial cells in SARS-CoV-2 myocarditis 

description: Objectives:
Our objective was to examine coronary endothelial and myocardial programming in patients with severe COVID-19 utilizing digital spatial transcriptomics.  

Background: 
Severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) has well-established links to thrombotic and cardiovascular events. Endothelial cell infection was initially proposed to initiate vascular events; however, this paradigm has sparked growing controversy. The significance of myocardial infection also remains unclear. 

Methods: 
Autopsy-derived cardiac tissue from control (n = 4) and COVID-19 (n = 8) patients underwent spatial transcriptomic profiling to assess differential expression patterns in myocardial and coronary vascular tissue. Our approach enabled transcriptional profiling in situ with preserved anatomy and unaltered local SARS-CoV-2 expression. In so doing, we examined the paracrine effect of SARS-CoV-2 infection in cardiac tissue. 

Results: 
We observed heterogeneous myocardial infection that tended to colocalize with CD31 positive cells within coronary capillaries. Despite these differences, COVID-19 patients displayed a uniform and unique myocardial transcriptional profile independent of local viral burden. Segmentation of tissues directly infected with SARS-CoV-2 showed unique, pro-inflammatory expression profiles including upregulated mediators of viral antigen presentation and immune regulation. Infected cell types appeared to primarily be capillary endothelial cells as differentially expressed genes included endothelial cell markers. However, there was limited differential expression within the endothelium of larger coronary vessels.

Conclusions: 
Our results highlight altered myocardial programming during severe COVID-19 that may in part be associated with capillary endothelial cells. However, similar patterns were not observed in larger vessels, diminishing endotheliitis and endothelial activation as key drivers of cardiovascular events during COVID-19.

Dataset Description:
Tab 1: RNA Sequencing results from all myocardial samples organized by patient COVID19 status. These results are independent of spatial location. 

Tab 2: RNA Sequencing results from all coronary endothelial samples organized by patient COVID19 status. These results are spatially-resolved to include only the endothelium.

Tab 3: RNA Sequencing results from myocardial samples organized by SARS-CoV-2 nucleocapsid expression (Positive vs. Negative immunostain). These results are spatially-resolved and segmented to highlight sequencing from SARS-CoV-2 infected cells.
DOI: 10.3535/7h5-73g-thk
title: †Lobites (Paralobites) pisum (Münster, 1841)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rvv-dss-798
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wmg-s2z-ycl
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28124021.v1
title: Resarch Date

description: The five afforestation types considered were plantations of <i>Populus simonii Carr</i> (PC), <i>Mongolian pine</i> (MP),<i> Siberian elm</i> (SE), <i>Caragana korshinskii Kom </i>(CK), mixed species, i.e., SE/CK, and natural grassland (NG) as the control. From January 2018 to December 2021, the soil water contents were monitored 75 times at 10-cm intervals along a 160-cm profile to explore the differences in soil water distributions and time variations among different afforestation types,
DOI: 10.3535/6nm-7ey-y8q
title: Mollusca

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7yw-2tq-xef
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27959484.v1
title: <b>A unique structure of bacteriophage T4 gene 32 protein with double-stranded DNA in low-salt conditions is distinguished by antibodies</b>

description: An enzyme-linked immunosorbent assay was used to evaluate the reactivities of anti-gp32 antibodies against gp32 in the presence of ssDNA, dsDNA, NaCl, or triton X-100.
DOI: 10.17632/nfs83fhrvd
title: Estimation of spatial and temporal parameters of gait in prolonged sitting and prolonged standing workers

description: Background: - Gait analysis is extensively used analytical device to assess the ability of human walk, by determine the difference in parameter and pattern of gait. It includes spatial and temporal gait parameters. Sedentary lifestyle may result in one or more musculoskeletal problem among healthy or asymptomatic individual that may affect the parameter of the gait. The aim of the study was to find out whether gait parameters would be affected in prolonged sitting and prolonged standing workers. Material and Method: - This cross-sectional study recruited 100 participants of age group between 36 – 49 years on the basis of inclusion and exclusion criterion. Equal participants were divided purposively on the basis of their occupation i.e. prolonged standing workers and prolonged sitting workers. Then their temporal and spatial parameters of gait were assessed using Temporal and Spatial Measure Gait Analysis Form as outcome measure. Result: - The normality of data was conducted by using Kolmogorov Smironov test which shows that the data was not normally distributed, hence non parametric test was applied. Level of significance (p-value) was set at &lt;0.05. Prolonged sitting and prolonged standing shows significant difference in spatiotemporal parameter of gait for every individual for cadence, step length and stride length. But no significant difference was observed in foot angle and width of walking base within groups. Between the groups no significant difference were observed. .Conclusion:- The study concludes that the spatial and temporal gait parameter might not be affected in prolonged sitting and standing workers.
DOI: 10.3535/sta-0le-g58
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wcs-qx0-xdp
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25886356.v1
title: Classification of isoforms

description: The mechanisms underlying high-altitude hypoxia adaptation on the Qinghai-Tibet Plateau have been extensively studied, yet the role of alternative splicing in this process remains poorly understood. Yunnan’s vertical zoning with pig breeds distributed across varying elevations provides an excellent model for investigating hypoxic adaptation. Here, we examined three indigenous Yunnan pig breeds: Diannan small-ear pigs (DSE, 500 m), Baoshan pigs (BS, 1500 m), and Diqing Tibetan pigs (DT, 3200 m). Using PacBio Iso-Seq, we obtained comprehensive full-length transcriptomes from five tissues (heart, kidney, liver, lung, and spleen), identifying 51,774 transcripts, including 34,813 novel ones, and 74,843 Alternative Splicing (AS) events across 10,686 AS genes.
DOI: 10.3535/mt7-e72-t8l
title: †Schuchertella Girty, 1904

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ydf-gcw-t33
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w53-dz9-ntm
title: Nihonia australis (de Roissy, 1805)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z0l-13t-te0
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tsd-kph-zhx
title: Mitra mitra (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.15468/dl.3tbagm
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 "TaxonKey is Diplodia agrifoliae S.C.Lynch & Eskalen"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009586-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/d06-f5q-p4q
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lsj-art-fy0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4z6-d8j-h1f
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mlq-lsp-k9c
title: †Schuchertella Girty, 1904

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13218674.v2
title: Fig2_dataset

description: The raw data for Figure 2
DOI: 10.6084/m9.figshare.18393698.v2
title: ISIS2015-21

description: A Longitudinal Dataset of Twitter ISIS (the Islamic State of Iraq and Syria) Users
DOI: 10.17632/fwc6h68834
title: Supplementary Table for "Facial atopic dermatitis is associated with increased rate and degree of food sensitization in children under 36 months" 

description: This data suggests an association between facial involvement in atopic dermatitis in children under 36 months of age and food sensitivity. Early and intensive treatment of facial atopic dermatitis might prevent food sensitization.
DOI: 10.17632/jjc5b9rbnz
title: LEI DE ENDURECIMENTO DE JOHNSON COOK

description: Trabalho apresentado ao III Simpósio Gaúcho de Engenharia Aeroespacial e Mecânica, Santa Maria, RS, Brasil.
DOI: 10.3535/v23-ear-803
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/x79-4dy-z5z
title: †Catenohalorites catenatus (von Buch, 1833)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.c.3720535_d2.v1
title: Additional file 2 of Using simulated fluorescence cell micrographs for the evaluation of cell image segmentation algorithms

description: The zip archive contains real images showing B cell nuclei and cytoskeleton. (ZIP 12390 kb)
DOI: 10.17632/v3gf5kzxhc
title: Oral cancer awareness, attitudes, and barriers among Jordanian adults: A cross-sectional ‎study ‎

description: The attached data was collected and analyzed to evaluate oral cancer and oral cancer screening awareness, attitudes, and barriers among Jordanian adults.
DOI: 10.3535/rlh-j73-12h
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/6m3bn7jzhs
title: GPS velocity data and Altyn Tagh fault slip model fitting result.

description: Table S1 for manuscript "Ge W, Z-K Shen, P Molnar, M Wang, P-Z Zhang, and D-Y Yuan: "GPS determined asymmetric deformation across central Altyn Tagh fault reveals rheological structure of northern Tibet", submitted to J. Geophys. Res.-Solid Earth.
DOI: 10.17632/pkhc233gmx
title: Metabolic diversity in sweet potato leaves and storage roots

description: LC-MS and GC-MS profiling of polar sweet potato leaf and root extracts.
GC-MS analysis was also performed on non-polar leaf and root extracts.
DOI: 10.3535/bb7-q6m-s9q
title: Terebratula Müller, 1776

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nbg-jla-76k
title: Nassarius arcularia (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/2v65tjzt5k
title: ChatGPT responses to questions about medication adverse effects

description: ChatGPT responses to queries about common adverse effects of medications commonly prescribed in dermatology
DOI: 10.3535/c7h-5g3-atz
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hvx-knh-gcc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/abw-lp5-0q7
title: †Murex spinicosta Bronn, 1831

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zq1-hxl-z4g
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/373-56p-gz8
title: Agate

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.8273714.v1
title: Weekly body weight & food intake

description: Male and female mice fed with 5 weeks of LF/HF diet.
DOI: 10.17632/pwkdk92sb4
title: RNA-seq  mys-2 KD

description: CL4176 VS CL4176;mys-2
CL4176 VS F1-RNAi mys-2
DOI: 10.3535/0rg-2km-vtn
title: †Atrypa Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ezn-q08-sy1
title: †Rimella fissurella (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/arm-kwn-4ah
title: †Atrypa Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/6wsttsrcgy
title: Data for: A threshold density of helium bubbles induces a ductile-to-brittle transition at a grain boundary in nickel

description: This file contains a nickel-helium (Ni-He) embedded atom method (EAM) potential.
DOI: 10.3535/4lz-dsg-q0b
title: †Atrypa Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1136081_d200
title: Ex10R55 GluR1-4 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.3535/p05-nsb-kyf
title: Conglomerate

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/p98-ql8-9lh
title: Clay

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24632325.v1
title: Differentiation of Sahelian aquifers from chemical and isotopic composition using linear statistics and machine learning

description: In Sahelian Africa, the characteristics of boreholes are often lost and, when several aquifers are present on the same site, it is difficult to know which one is being tapped or is likely to be contaminated, which hinders good management of the resource. In this study conducted on 153 wells distributed in the four major aquifers of Burkina Faso, the variation in chemical composition within the aquifers is high compared to that between the aquifers. In spite of this, treatment by linear statistical analysis and/or machine learning allows the discrimination of the aquifers with a success rate of about 80%. The introduction of water isotopes as an additional parameter and a dimensional reduction by principal component analysis allowed a discrimination rate of 87.6% to be achieved. The pathway of water from sedimentary to basement aquifers explains some of the confusion.
DOI: 10.17632/tvrmjxptv8
title: Metal/Metal oxides

description: Construction of transition metal-based MoNi4/WO₃ heterostructure for enhanced hydrogen evolution reaction
DOI: 10.6084/m9.figshare.1566831.v1
title: Lab 3 Dataset 4 - Bird Species Abundance Along a Transect, Group 4

description: This lab was executed to determine the species abundance in a specific area. 10 belt transects of 10 metres by 10 metres were laid out randomly, 5 in the Danby grasslands and 5 in the Danby woodlot, each watched for 1 minute. Each time a bird landed in the transect or flew over it, the species and abundance was recorded. The species was determined by the observers with the help of <em>Person Field Guide to Birds of North America</em> by Roger Tory Peterson . The approximate distance from the beginning of the transect to the sighting of the bird was recorded. The wind speed was determined using the observers discretion and the Beaufort Scale. Data was collected at Danby grasslands and Danby woodlot at York University on September 30th, 2015 around 3:30pm. The weather was around 15°C with a slight overcast and mild breeze. Members of group 4 are: Kristine Del Rosario, Nassar Khan. Michael Angelini and Kate Britanico.
DOI: 10.6084/m9.figshare.28302206.v1
title: Contraceptive trend database (version 3) final 17062024.xlsx

description: We collected aggregate data from the DHIS2 on the number of newly enrolled contraceptives per month per 100 women aged 10-45, stratified by age group, district, and method.