cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j07p8z04
title: CIL: 53097, Homo sapiens, High-grade serious overian cancer. In Cell Image Library

description: Imaging mode: Fluorescence in situ hybridization (FISH)
Visualization methods: Nikon Eclipse fluorescence inverted microscope equipped with a charge-coupled device camera (Andor Neo sCMOS), using filter sets for DAPI/ YGFP/TRITC/CY GFP with an objective lens (Plan Apo VC 100x, Nikon). Captured with 100x magnification of the objective and a pixel size of 0.07 microns
description: One z layer of a z-stack at the given image
description: Image 2, z=1 from SC_030
DOI: 10.6075/j00p0zd9
title: CIL: 50943, Trypanosoma (Trypanozoon) brucei, T. brucei cells. In Cell Image Library

description: Imaging mode: transmission electron microscopy (TEM)
Visualization methods: Stain with Uranyl acetate and Lead citrate
description: Wild type Trypanosoma brucei cells (Strain 427) were high pressure frozen and visualized through transmission electron microscopy (TEM). The images show the nucleus of the cells and the black arrow indicates nuclear envelope budding events.
DOI: 10.6075/j0fj2gcg
title: CIL: 53046, Homo sapiens, High-grade serious overian cancer. In Cell Image Library

description: Image 3, z=13 from SC_028
description: One z layer of a z-stack at the given image
description: Imaging mode: Fluorescence in situ hybridization (FISH)
Visualization methods: Nikon Eclipse fluorescence inverted microscope equipped with a charge-coupled device camera (Andor Neo sCMOS), using filter sets for DAPI/ YGFP/TRITC/CY GFP with an objective lens (Plan Apo VC 100x, Nikon). Captured with 100x magnification of the objective and a pixel size of 0.07 microns
DOI: 10.15468/dl.3ggsk5
title: Occurrence Download

description: A dataset containing 2393 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Bauhinia brachycarpa"
 ]
}

 The dataset includes 2393 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009401-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15159/phytop.202
title: Lõõdla

description: Phytoplankton biomass, diversity and abundance in samples collected from Lake Lõõdla during the period 1952-2013.
DOI: 10.5519/qd.b5qe1lgy
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (10625 records)
DOI: 10.15468/dl.gg2ed6
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plesiolebias fragilis",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015197-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kh5c63
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Feretia aeruginescens",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 85 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015198-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17988640
title: Optimal dynamic passive controller dataset - WP4 Dynamic passive controller development

description: This dataset and accompanying scripts support SHY WP4 / Task 4.2. The upload dataset provides: (i) post-processed numerical results obtained using the MPC-like spectral constrained optimal control implementation for Wavepiston, and (ii) scripts to reproduce the performance metrics plots used to document controller and Wavepiston behaviour across the representative North Gran Canaria wave-climate (conforming a potential deployment site). In addition, this repository includes the main simulation configuration script used to initialise and execute the numerical optimisation workflow, defining controller settings, constraints, solver parameters and wave-realisation settings. Together, the files uploaded enable inspection, reproduction, and interpretation of the performance results reported in D4.2.

The results cover four Wavepiston configurations (C1–C4) that differ in restoring capability (with or without an external spring) and PTO power-flow behaviour (passive/unidirectional operation versus reactive/bidirectional reference cases). This configuration set supports the sensitivity analysis of optimal control performance with respect to the Wavepiston distinctive design features carried out in Deliverable D4.2. The evaluated performance metrics, which can potentially inform LCOE-related design considerations that are central to SHY, include: absorbed power, peak-to-mean power ratio, RMS and peak stroke utilisation, RMS and peak PTO force, and climate-weighted energy production indicators. For each sea state and configuration, the constrained optimisation problem is solved using multiple stochastic realisations of the incident wave elevation, thereby enabling assessment of the consistency of the resulting performance metrics and systematic verification of constraint satisfaction. This procedure supports the evaluation of the robustness of the proposed dynamic passive control strategy across a realistic wave climate.

The files provide traceable evidence of the controller software workflow used in D4.2 and enable independent inspection and reproduction of the reported outputs.
DOI: 10.5281/zenodo.17988641
title: Optimal dynamic passive controller dataset - WP4 Dynamic passive controller development

description: This dataset and accompanying scripts support SHY WP4 / Task 4.2. The upload dataset provides: (i) post-processed numerical results obtained using the MPC-like spectral constrained optimal control implementation for Wavepiston, and (ii) scripts to reproduce the performance metrics plots used to document controller and Wavepiston behaviour across the representative North Gran Canaria wave-climate (conforming a potential deployment site). In addition, this repository includes the main simulation configuration script used to initialise and execute the numerical optimisation workflow, defining controller settings, constraints, solver parameters and wave-realisation settings. Together, the files uploaded enable inspection, reproduction, and interpretation of the performance results reported in D4.2.

The results cover four Wavepiston configurations (C1–C4) that differ in restoring capability (with or without an external spring) and PTO power-flow behaviour (passive/unidirectional operation versus reactive/bidirectional reference cases). This configuration set supports the sensitivity analysis of optimal control performance with respect to the Wavepiston distinctive design features carried out in Deliverable D4.2. The evaluated performance metrics, which can potentially inform LCOE-related design considerations that are central to SHY, include: absorbed power, peak-to-mean power ratio, RMS and peak stroke utilisation, RMS and peak PTO force, and climate-weighted energy production indicators. For each sea state and configuration, the constrained optimisation problem is solved using multiple stochastic realisations of the incident wave elevation, thereby enabling assessment of the consistency of the resulting performance metrics and systematic verification of constraint satisfaction. This procedure supports the evaluation of the robustness of the proposed dynamic passive control strategy across a realistic wave climate.

The files provide traceable evidence of the controller software workflow used in D4.2 and enable independent inspection and reproduction of the reported outputs.
DOI: 10.15468/dl.ubbj3v
title: Occurrence Download

description: A dataset containing 6687 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acalypha australis",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 6687 records from 182 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015200-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17617/3.x50dk9
title: KIMMDY_COLLAGEN_HAT_input_files

description: These files were originally generated by Eric Hartmann and uploaded for data availability in this dataset.

Gromacs Structure Files for Collagen Fibrils as used in

https://doi.org/10.1101/2025.07.02.662624 

https://github.com/graeter-group/kimmdy-examples/tree/main/collagen_HAT



Simulations of consecutive HAT reactions are conducted with an all-atom model of
a Rattus norvegicus collagen fibril (PDB ID: 3HR2) comprised of 41 triple helices
spanning one central overlap and one gap region for a total of roughly 320 000 pro-
tein atoms. ColBuilder [1] was used to generate a model with N- and C-terminal
PYD crosslinks with a connectivity of 9.C-5.B-944.B and 1047.C-1047.A-98.B, respec-
tively. Furthermore, all Phe and Tyr residues were randomly mutated to either DOPA
deprotonated at the Cϵ (DO1) or Cζ (DO2) hydroxy group. Since no quantitative
experimental data of the oxidation state of Phe and Tyr residues has been published,
these mutations serve to treat all potential DOPA sites as equally strong radical
scavengers.
The fibril was solvated, salt ions were added to neutralize the system and reach
a concentration of 150 mM. After an energy minimization using the steepest descent
method, a 10 ns NVT equilibration and then a 10 ns NpT equilibration were performed.
Homolytic breaks at the previously identified PYD short-arm Cα-Cβ sacrificial
bond ([2]) were introduced to the equilibrated structure using KIMMDY. Overall, 12
structures with different break patterns of four breaks each for the 16 PYD crosslinks
were generated, taking care to include each residue three times and excluding crosslinks
within 40 ˚A of each other or on the same triple helix. The radical-containing structures
were equilibrated in the NpT ensemble for another 10 ns.



[1] Obarska-Kosinska, A., Rennekamp, B., ¨Unal, A. & Gr¨ater, F. Colbuilder: A server
to build collagen fibril models. Biophysical Journal 120, 3544–3549 (2021). URL
https://www.sciencedirect.com/science/article/pii/S0006349521005610.
[2] Rennekamp, B. et al. Collagen breaks at weak sacrificial bonds taming its
mechanoradicals. Nature Communications 14, 2075 (2023).
description: Gromacs
DOI: 10.15468/dl.c8m8gf
title: Occurrence Download

description: A dataset containing 885 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Menegazzia terebrata",
 "Country is one of (Norway)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1986",
 "Year is less than or equal to 2025",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Machine Observation"
 ]
 }
 }
 ]
}

 The dataset includes 885 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015201-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ca5tec
title: Occurrence Download

description: A dataset containing 16626 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-180 -23.5,180 -23.5,180 23.5,-180 23.5,-180 -23.5))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate rounded, Geodetic datum assumed WGS84, Country derived from coordinates, Continent derived from coordinates, Occurrence status inferred from individual count, Institution match fuzzy, Coordinate reprojection suspicious, Collection match fuzzy)",
 "TaxonKey is Primates",
 "Year 1901-2026"
 ]
}

 The dataset includes 16626 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015202-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18508753
title: Dataset for: Experimental and computational modelling as a tool for better prediction of inhaled medication: The case of inhaled furosemide for the treatment of dyspnoea

description: This dataset contains experimental data from cascade impaction measurements, 3D surface models of realistic human airway replicas, and results from Large Eddy Simulations (LES) of aerosol transport. The data supports the investigation of inhaled furosemide deposition under simulated dyspnoeic breathing conditions.
DOI: 10.5281/zenodo.18508754
title: Dataset for: Experimental and computational modelling as a tool for better prediction of inhaled medication: The case of inhaled furosemide for the treatment of dyspnoea

description: This dataset contains experimental data from cascade impaction measurements, 3D surface models of realistic human airway replicas, and results from Large Eddy Simulations (LES) of aerosol transport. The data supports the investigation of inhaled furosemide deposition under simulated dyspnoeic breathing conditions.
DOI: 10.15468/dl.5s275a
title: Occurrence Download

description: A dataset containing 1221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bauhinia cheilantha",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 1221 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015204-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/d442cdcb-771c-443c-82ba-30cd9e1f8e67
title: Data supporting publication: Green 3D printing - Understanding and controlling environmental effects in direct ink writing of upcycled biomaterials

description: Data on print quality versus temperature, relative humidity, and airflow for ambient temperature 3D printing of upcycled biocomposite pastes (Direct Ink Writing) to replace melting of plastics in additive manufacturing. This dataset lists all measurements (dimensional accuracy, overhang angle, bridging length) of all print runs for all material variations in all environmental conditions (temperature, relative humidity, airflow).
DOI: 10.4121/d442cdcb-771c-443c-82ba-30cd9e1f8e67.v1
title: Data supporting publication: Green 3D printing - Understanding and controlling environmental effects in direct ink writing of upcycled biomaterials

description: Data on print quality versus temperature, relative humidity, and airflow for ambient temperature 3D printing of upcycled biocomposite pastes (Direct Ink Writing) to replace melting of plastics in additive manufacturing. This dataset lists all measurements (dimensional accuracy, overhang angle, bridging length) of all print runs for all material variations in all environmental conditions (temperature, relative humidity, airflow).
DOI: 10.15468/dl.v9hbhw
title: Occurrence Download

description: A dataset containing 160 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Croton cinerellus"
 ]
}

 The dataset includes 160 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015205-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hgvz7w
title: Occurrence Download

description: A dataset containing 707 records in GBIF matching the query:

SELECT
 countryCode,
 GBIF_ISEA3HCode(
 7, 
 decimalLatitude,
 decimalLongitude,
 COALESCE(coordinateUncertaintyInMeters, 1000)
 ) AS geogrid_id,
 COUNT(DISTINCT speciesKey) AS unique_species_count
FROM occurrence
WHERE countryCode = 'AU'
AND coordinateUncertaintyInMeters &lt;= 2000
AND hasGeospatialIssues = FALSE
AND hasCoordinate = TRUE
AND occurrenceStatus = 'PRESENT'
GROUP BY countryCode, geogrid_id;


 The dataset's 707 records were derived from 892 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015185-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5284/1139397
title: Digital Archive from Analytical Buildings Recording Work of the Covered Yard at Grange Farm, Northington, Hampshire, 2024

description: This collection comprises image, text and GIS data from Analytical Buildings Recording (Level 3) work at the Covered Yard at Grange Farm Northington, Hampshire. The work was undertaken by Wessex Archaeology between September and November 2024. Grange Farm is a formally arranged model farm complex comprising agricultural and residential buildings, built in 1878, of Hampshire red brick and concrete block with slate roofs. The Farm displays almost all the original elements of the model farm as it was designed in the late 19th century including the farmhouse, dairy, milking parlour, granary range, stables, mill range, laundry cottage, outbuilding and covered yard.
DOI: 10.15128/r2s4655g677
title: Strain-rate dependent mechanics of metallic kirigami [dataset]

description: Kirigami, the art of folding and cutting paper, has inspired a new class of structures with remarkable properties. Novel applications include: soft robotics, metamaterials, deployable structures, and energy-dissipating devices. Many studies have explored the behaviour of kirigami structures with varying cut patterns. However, these studies have focused on quasi-static deformations and linear elastic materials. In this work, we investigate the dynamic response of metallic kirigami structures. Using static and dynamic experiments, supplemented by numerical simulations and semi-analytical calculations, we provide a comprehensive understanding of the strain-rate-dependent behaviour of kirigami. More specifically, we compute a critical impact velocity beyond which the response of the kirigami switches from imperfection-dominated to the formation of a tension-induced buckling front. This critical impact velocity captures the strain-rate dependent mechanics of metallic kirigami and can be computed using the static stress-strain response, greatly reducing computational (and experimental) time and complexity. The findings of this study provide the foundation for designing advanced kirigami-based systems tailored to dynamic loading regimes, such as blast and impact applications.
DOI: 10.25574/30298
title: Chandra X-ray Observatory ObsId 30298

description: The sounds of feedback: deep and wide imaging of the cool core of the Perseus cluster
DOI: 10.5281/zenodo.18631536
title: 1098-the-silent-code covers A-B
DOI: 10.5281/zenodo.18631535
title: 1098-the-silent-code covers A-B
DOI: 10.15468/dl.a4a48b
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plesiolebias lacerdai",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015207-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hxhhax
title: Occurrence Download

description: A dataset containing 9344 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-196.95573 17.28134,-153.29919 17.28134,-153.29919 41.29928,-196.95573 41.29928,-196.95573 17.28134))",
 "HasGeospatialIssue is false",
 "TaxonKey is Phoebastria nigripes",
 "Year 1996-2005"
 ]
}

 The dataset includes 9344 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015206-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9w5ywj
title: Occurrence Download

description: A dataset containing 683 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melanelia hepatizon",
 "Country is one of (Norway)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1986",
 "Year is less than or equal to 2025",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Machine Observation"
 ]
 }
 }
 ]
}

 The dataset includes 683 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015209-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ek52bu
title: Occurrence Download

description: A dataset containing 1700913 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "DatasetKey is one of (INPN - Données flore des CBN agrégées par la FCBN, Données acquises par le Conservatoire botanique national du Bassin parisien et son réseau (bénévoles, associations, autres structures professionnelles) - Flore du Bassin parisien (CBNBP), Centralisation des observations floristiques dans le cadre du SINP - Observations floristiques - plateforme SINP régionale SILENE PACA, DIGITALE - Observations flore et habitat centralisées par le CBN de Bailleul-Données d'occurrence taxon (Plantes vasculaires, Bryophytes et Algues) de la région des Hauts-de-France mises au format standard OccTax v3.1 par le CBN de Bailleul en mai 2023 (Données issues de Digitale2 : digitale.cbnbl.org), Données STOC-EPS, Données issues du portail Sigogne - Bourgogne-Franche-Comté - Observatoire LPO Franche-Comté des espèces (oiseaux, amphibiens, reptiles, mammifères sauf chauve-souris), Anciennes données CBNBP-Anciennes données Flora CBNBP)",
 "Geometry POLYGON((-1.81784 42.38499,7.79352 42.38499,7.62465 44.80542,7.79352 46.67703,6.6076 47.28881,2.24201 47.16792,-1.69374 47.03359,-1.81784 46.67703,-1.81784 42.38499))",
 "OccurrenceStatus is Present",
 "PublishingOrg is 1928bdf0-f5d2-11dc-8c12-b8a03c50a862",
 "Year 2016-2026"
 ]
}

 The dataset includes 1700913 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015192-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hj44st
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fernelia buxifolia",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015208-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yktx5g
title: Occurrence Download

description: A dataset containing 2681 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-201.98365 17.84315,-153.44037 17.84315,-153.44037 40.3825,-201.98365 40.3825,-201.98365 17.84315))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phoebastria nigripes",
 "Year 2006-2016"
 ]
}

 The dataset includes 2681 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015211-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.