cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28856981.v1
title: SupplementaryData1.xlsx

description: This dataset compiles records of modern biogenic structures (<i>lebensspuren</i>) associated with stamping behavior in flamingos (family Phoenicopteridae) across a wide range of environmental settings. The data span from the 18th to the 21st century and were gathered from both peer-reviewed scientific literature and video records available through citizen science collaborative platforms. Each entry documents behavioral categories such as stamping, rotating stamping, dislocating stampamg, false stamping and standing stamping, classified by flamingo species and contextualized with environmental, hydrological, and sedimentological descriptors (e.g., sediment type, salinity, pH, and Köppen climate classification). Geographic locality and full references are also provided, when available. The dataset was developed to support comparative analyses of behavioral-environmental patterns across different flamingo species and to offer a synthetic overview of the family Phoenicopteridae in terms of behavioral trace formation and associated environmental variables. Additionally, it was designed to facilitate direct comparison with the distribution of the flamingo ichnological fossil record, enabling evaluations of inferred paleoenvironmental associations based on trace fossil occurrences. This resource is particularly useful for researchers interested in:The analysis of modern biogenic structures and their preservation potential in various sedimentary contexts;Behavioral studies of flamingos and their interactions with diverse environments;Applications in comparative ichnology and paleoenvironmental reconstructions.
DOI: 10.6084/m9.figshare.23544432.v1
title: Supplementary Material for: Exploring the Associations and Molecular Impacts of miR-146a/rs2910164 and miR-196a2/rs185070757 with Rheumatoid Arthritis in a Pakistani Population

description: <b><i>Introduction:</i></b> MicroRNAs (miRNAs) are a new class of molecules that participate in post-transcriptional regulation of gene expression and hence have been reported to have a crucial role in the pathogenesis of rheumatoid arthritis (RA). We aimed to investigate the association of miR-146a rs2910164 (G/C) and miR-196a2 rs185070757 (T/G) with RA susceptibility in Pakistani patients and to bioinformatically predict the molecular function of these miRNAs. <b><i>Methods:</i></b> A case-control study on 600 individuals was conducted, including 300 RA patients and 300 matching healthy controls. Genotyping was performed by tetra-primer amplification of refractory mutation system-polymerase chain reaction, and the association between variants and RA was statistically determined using different models. <b><i>Results:</i></b> For the variant rs2910164 (G/C) in miR-146a, no difference in genotype distribution was observed between RA cases and controls, as determined using co-dominant (χ<sup>2</sup> = 4.33; <i>p</i> = 0.114), homozygous dominant (C/C vs. G/G + C/G) (OR = 0.740 [0.531–1.032]; <i>p</i> = 0.091), homozygous recessive (G/G vs. C/C + G/C) (odds ratio [OR] = 01.432 [0.930–2.206]; <i>p</i> = 0.126), heterozygous (G/C vs. C/C + G/G) (OR = 1.084 [0.786–1.494]; <i>p</i> = 0.682), and additive (OR 0.778 [0.617–0.981]; <i>p</i> = 0.039) models. Similarly, the GT genotype in the rs185070757 (T/G) miR-196a2 variant did not differ between cases and controls with any models (<i>p</i> &gt; 0.05). For the first time, we report no association of miR-146a rs2910164 (G/C) and miR-196a2 rs185070757 (T/G) with RA in a Pakistani population. A subsequent bioinformatic analysis revealed that the CC genotype of miR-146a rs2910164 might have a protective role against RA pathogenesis, with no effect observed with the miR-196a2 rs185070757. <b><i>Conclusion:</i></b> Our findings suggest that these miRNAs might have little-to-no impact on the RA pathogenesis in the Pakistani population.
DOI: 10.6084/m9.figshare.7467287.v1
title: GC-MS data

description: The GC–MS, and GC-FID runs were carried out on a two parallel GC-QP2010 and GC2010 instruments (Shimadzu, Kyoto, Japan). The GC column used was a 30 m × 0.25 mm i.d. × 0.25 μm df Supelcowax-10 column (MilliporeSigma). Helium was exploited as carrier gas, at a constant linear velocity of 30.0 cm/s which corresponding to an inlet pressure of 26.4 kPa for GC-MS and 97.4 kPa for GC-FID. The temperature program was the same in both analysis-type: 40°C at 3° C/min to 250°C, at 10°C/min to 280°C, held 10 min. GC-MS ion source temperature was set at 200°C; the interface temperature, 250°C. Scan range was set to m/z 40–360, with a scanning rate of 2000 amu/s. FFSNC 3.0 (Shimadzu) and NIST11 (Wiley) commercial libraries were used for identification, applying two filters, namely a spectrum similarity match over 85% and Linear Retention Index (LRI) (related to a C4-C24 FAMEs mixture) agreement in the ±15 range. The FID temperature was set at 280°C (sampling rate 40 ms) and gas flows were 40 mL/min for hydrogen and 400 mL/min for air, respectively. The data handling was supported by GCMSsolution ver.4.30 and GCsolution software (Shimadzu) for GC-MS and GC-FID analysis, respectively.
DOI: 10.6084/m9.figshare.20795986.v1
title: Face_features_and_clothing_aesthetics

description: csv file are organised such that the first line explains the nature of the entries in the column below. Raw data files contain the choice for each participant (column 1) where the dependent variable is the colour (specified in different colour systems: hue, saturation and value; Red, Green, Blue; and CIE L*, a*, b*) of the clothing selected by the participant. Other columns record the independent variables (the lightness of the eyes and facial skin in the simuli, and the demographics of the particnant). Files with means in their name give the average (for each participant) of the dependent variable for all face stimuli of one type. Files reflect two sources of data collection: Experiment 1 which has 2 tasks (a and b) perfomed by the same participants, and Experiment 2 which is performed by a different set of particpants.
DOI: 10.17044/scilifelab.19375172.v1
title: Modelling of Large Protein Complexes

description: AlphaFold and AlphaFold-multimer can predict the structure of single- and multiple chain proteins with very high accuracy. However, predicting protein complexes with more than a handful of chains is still unfeasible, as the accuracy rapidly decreases with the number of chains and the protein size is limited by the memory on a GPU. Nevertheless, it might be possible to predict the structure of large complexes starting from predictions of subcomponents. Here, we take a graph traversal approach to assemble 175 protein complexes with 10-30 chains using predictions of subcomponents. We compute paths through a complex graph constructed of subcomponents using Monte Carlo Tree Search and assemble these in a stepwise fashion. Using subcomponents predicted from all possible trimeric interactions, 91 complexes (52%) are assembled to completion. We create a scoring function, mpDockQ, that can distinguish if assemblies are complete and predict their accuracy. Selecting complete complexes with TM-score ≥0.9 at FPR 10% using mpDockQ results in 20 complete complexes with a median TM-score of 0.92. The complete assembly protocol, starting from the sequences, is freely available at: https://gitlab.com/patrickbryant1/molpc <br>The repository here contains MSAs and predicted subcomponents to reproduce the assembly for the "all-trimer" approach.<br><br><br>
DOI: 10.6084/m9.figshare.21205772.v2
title: Shared data for JGR

description: There are files including WRF simulation data (hourly) with different SOD parameterization schemes. Variables include geopotential height, temperature, 10m u component of wind, 10m v component of wind, u component of wind, v component of wind, flow-blocking drag (FBD), and mountain wave drag (MWD).
DOI: 10.6084/m9.figshare.24634788.v1
title: <b>Can tea saponin be used to sustainably control the red import fire ant </b><b>Solenopsis invicta</b><b> (Hymenoptera: Formicidae)?</b>

description: Data of the submitted manuscript: <b>Can tea saponin be used to sustainably control the red import fire ant </b><b>Solenopsis invicta</b><b> (Hymenoptera: Formicidae)?</b>
DOI: 10.6084/m9.figshare.14198618.v1
title: Supplementary Material for: Breastfeeding and Childhood Dental Caries: Results from a Socially Diverse Birth Cohort Study

description: Previous studies showed that prolonged breastfeeding increases the risk of caries. However, the observed associations were mainly based on non-European populations, and important confounding and mediating factors like socioeconomic position (SEP) and diet were often neglected. The aim of this study was to investigate the role of breastfeeding and bottle-feeding practices on dental caries during childhood while accounting for SEP, ethnic background, and sugar intake. This study was part of the Generation R Study, a prospective multiethnic cohort study conducted in Rotterdam, The Netherlands. In total, 4,146 children were included in the analyses. Information about feeding practices was derived from delivery reports and questionnaires during infancy. Caries was measured via intraoral photographs at the age of 6 years and defined as decayed, missing, and filled teeth (dmft). Negative binomial hurdle regression analyses were used to study the associations between several infant feeding practices and childhood caries. The prevalence of dental caries at the age of 6 years was 27.9% (<i>n</i> = 1,158). Prolonged breastfeeding (for &gt;12 months) was associated with dental caries (OR 1.35, 95% CI 1.04–1.74) and the number of teeth affected by dental caries (RR 1.27, 95% CI 1.03–1.56). Furthermore, nocturnal bottle-feeding was associated with dental caries (OR 1.52, 95% CI 1.20–1.93). All associations were independent of family SEP, ethnic background, and sugar intake. Results from this Dutch cohort study confirmed the previously observed associations between prolonged breastfeeding and nocturnal bottle-feeding and the increased risk of childhood dental caries, even after proper adjustments for indicators of SEP, ethnic background, and sugar intake. Future studies are encouraged to elaborate further on possible explanations for the observed relationships. Healthcare professionals should be aware and advise caregivers about the potential risk of prolonged breastfeeding on caries development by applying the current recommendations on breastfeeding, oral hygiene, and feeding frequency.
DOI: 10.17632/ykbkcb59pb
title: Genz user perception

description: The data contains the perception of Genz towards AI based chatbot adoption for ticket reservation system in context of aviation industry.
DOI: 10.6084/m9.figshare.5615413.v1
title: Data from users registered for the 9th Spanish R Users conference

description: Data extracted from the user, event and group profile for delegates in the 9th R users conference in Spain<br>
DOI: 10.6084/m9.figshare.5816073.v1
title: Populational fluctuation of lace bug in cassava

description: ABSTRACT: Vatiga illudens is a pest of economic importance for the cultivation of cassava. Knowing the time of incidence of this insect in combination with environmental factors enables control strategies. The objective of this study was to determine the population dynamics of V. illudens in cassava cultivars and the correlation of these insects for climatic factors in Dourados, Mato Grosso do Sul. Four cultivars of cassava were evaluated: Kiriris, N-25, IAC 90 and Fécula Branca. Population assessment of the lace bug was conducted over 18 months observing 2 crop cycles. Fortnightly, they were randomly sampled four central plants of each plot and five leaves from the middle third of each plant, quantifying the number of nymphs and adults per leaf. Twenty months after planting cassava, two central rows of each plot were harvested and measured productivity in kg ha-1. The experimental design was randomized blocks with four treatments and two replications. The peak population of nymphs and adults for the first crop cycle occurred during the months from March to May. For the second cycle, these population indices happened in the months from January to April. Cultivar Kiriris showed the highest mean number of nymphs and adults per leaf cassava and cultivar IAC 90, the lowest number of insects. There was a negative correlation between the population of adult insects and root yield. The maximum, mean and minimum temperatures affected the population of nymphs V. illudens. These results are fundamental to define management strategies for control of lace bug.
DOI: 10.6084/m9.figshare.15173934.v1
title: On Understanding Contextual Changes of Failures - QRS 2021 [dataset]

description: Results obtained after analyzing a repository containing 1753 mutants for 20 original programs from which we extracted 1496 valid mutants. Each alternative program (mutant) was compared to its corresponding original program. The tool Morpheus then infers which mutation operators are behind these changes. In other words, it translates modifications to programs in terms of the corresponding mutation operators.
DOI: 10.6084/m9.figshare.21572445.v1
title: wudang_v10.rar

description: This data set contains chemical composition of NR-PM1 and particle number size distribution measured on Mt. Wudang in Central China during summer 2018 (May 29-June 29) , along with concentrations of some trace gases and meterolocial variables. The data format is self-consistent and explained.
DOI: 10.6084/m9.figshare.28078832.v1
title: Green Cosmetics Purchase Behavior in the Digital Age: The Contribution of E-WoM as a Moderator

description: This research is one of the outputs of the International Research Grant, Binus University and University Utara Malaysia, with contract No: 069B/VRRTT/III/2024. The researchers thank Binus University and University Utara Malaysia for supporting this publication
DOI: 10.6084/m9.figshare.14321728.v1
title: Light-Curing Units, Photoinitiators System, and Monomers on Physico-Mechanical Properties of Experimental Composite Resins

description: ABSTRACT This study evaluated the physico-mechanical properties of experimental composite resins made with different resin matrix and light-curing units. Experimental composite groups were divided according to monomers (BisGMA + TEGDMA-BT and BisGMA + BisEMA + UDMA + TEGDMA-BBUT) and photoinitiator system (camphorquinone-CQ and 1-phenyl-1,2-propanedione-PPD). A quartz tungsten halogen (QTH) or light-emitting diode (LED) were used to light cure all materials. Knoop microhardness (n = 10) was determined using Knoop microhardness test. Compressive strength, diametral tensile strength, and Young modulus (n = 7) were obtained using a universal testing machine at crosshead speed of 1.0 mm/min. The data were submitted to a three-way ANOVA and the Tukey post-hoc test (α = 0.05). QTH presented the highest total irradiance values and similar total radiant exposure to LED. For the compressive strength test, BT-PPD light-cured with LED group showed the lowest mean value. BT-CQ light-cured with LED group exhibited the lowest diametral tensile strength results. The BBUT-composite resins presented lowest Young modulus values, with no statistical difference between light-curing units (QTH and LED) and photoinitiators system (CQ and PPD). Application of QTH or LED in BT-based composite resins with PPD photoinitiator generated suitable results regarding the physico-mechanical properties.
DOI: 10.6084/m9.figshare.23703960.v1
title: Data from Klee et al. - Crayfish and snail interactions

description: Data includes iformation from each trial interaction between crayfish and snails that are predator naive or developed induced defenses in response to crayfish predation. Snail shell measurements, individual crayfish ID and all behavioral observations are recorded.
DOI: 10.6084/m9.figshare.24847239.v1
title: Stage2 GENCODE search database

description: The FASTA files is used for stage2 database search for novel and variant identification from transcripts data.
DOI: 10.6084/m9.figshare.5122453.v1
title: Supplementary Material for: TGIF Mutations in Human Holoprosencephaly: Correlation between Genotype and Phenotype

description: Holoprosencephaly (HPE), which results from failed or incomplete midline forebrain division early in gestation, is the most common forebrain malformation. The etiology of HPE is complex and multifactorial. To date, at least 12 HPE-associated genes have been identified, including <i>TGIF</i> (transforming growth factor beta-induced factor), located on chromosome 18p11.3. <i>TGIF</i> encodes a transcriptional repressor of retinoid responses involved in TGF-β signaling regulation, including Nodal signaling. <i>TGIF</i> mutations are reported in approximately 1–2% of patients with non-syndromic, non-chromosomal HPE.We combined data from our comprehensive studies of HPE with a literature search for all individuals with HPE and evidence of mutations affecting <i>TGIF</i> in order to establish the genotypic and phenotypic range. We describe 2 groups of patients: 34 with intragenic mutations and 21 with deletions of <i>TGIF</i>. These individuals, which were ascertained from our research group, in collaboration with other centers, and through a literature search, include 38 probands and 17 mutation-positive relatives. The majority of intragenic mutations occur in the TGIF homeodomain. Patients with mutations affecting <i>TGIF</i>recapitulate the entire phenotypic spectrum observed in non-chromosomal, non-syndromic HPE. We identified a statistically significant difference between the 2 groups with respect to inheritance, as <i>TGIF</i> deletions were more likely to be de novo in comparison to <i>TGIF</i> mutations (χ<sup>2</sup><sub>(2)</sub> = 6.97, p<sub>permutated</sub> = 0.0356). In addition, patients with <i>TGIF</i> deletions were also found to more commonly present with manifestations beyond the craniofacial and neuroanatomical features associated with HPE (p = 0.0030). These findings highlight differences in patients with intragenic mutations versus deletions affecting <i>TGIF</i>, and draw attention to the homeodomain region, which appears to be particularly relevant to HPE. These results may be useful for genetic counseling of affected patients.
DOI: 10.21233/xzss-rz49
title: Ussurisky Nature Reserve ostracode surface sample dataset

description: Raw data for the Ussurisky Nature Reserve ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.3514706.v1
title: Appendix A. References included in the meta-analysis database.

description: References included in the meta-analysis database.
DOI: 10.6084/m9.figshare.3517367.v1
title: Appendix F. Inverse proximity-weighted, among-population average scale-integrated resource selection functions (SRSFs).

description: Inverse proximity-weighted, among-population average scale-integrated resource selection functions (SRSFs).
DOI: 10.6084/m9.figshare.27934416.v1
title: 20241201_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.5165821.v1
title: Osteopathy Clinical Teaching Questionnaire - Rasch Data

description: Data set for the Rasch analysis of the Osteopathy Clinical Teaching Questionnaire
DOI: 10.6084/m9.figshare.7901294.v1
title: gVCF_HG01801

description: 1000 Genomes gVCF mapped to hs37d5 for HG01801. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17632/v7yy78d89p
title: Data on information consumption and urban employment

description: This data is the city-level panel data on the pilot policy of urban employment and information consumption, covering 285 prefecture-level cities in China from 2003 to 2019. It is mainly compiled by the Statistical Yearbook of Chinese Cities.
DOI: 10.6084/m9.figshare.13019912.v1
title: Hurricane Teddy (2020) North Carolina, USA Traffic Camera Images

description: This is a single tar.gz file with folders that contain pictures from four traffic cameras along the North Carolina, USA coastline from ~12:00 EST Sept 19 2020 to ~22:00 EST Sept 25 2020. Pictures were scraped from the NC DOT (Department of Transportation) traffic camera website every 10 minutes using the code linked below. <br><br>Each image has a time stamp as the file name, and also a small timestamp from the camera in the corner of each frame.<br><br>Nighttime images that show no information have been removed. 'Error' images —which are green and display 'Image currently unavailable' — have also been removed.<br>
DOI: 10.4121/14377184.v1
title: Calendar ageing test results on commercial 18650 Li ion cell @ 10°C and 0°C

description: Calendar ageing of Li ion 18650 commercial cell (Ni rich positive electrode and Si/Gr based negative electrode).Each test condition was applied on two cells.<br>The cells were aged at different SOC levels and different environmental temperatures.The ageing test is regularly interrupted to run a reference test.More details of the ageing tests can be found in the Everlasting deliverablehttps://everlasting-project.eu/wp-content/uploads/2020/03/EVERLASTING_D2.3_final_20200228.pdf
DOI: 10.6084/m9.figshare.26135611.v1
title: retention data medical specialist

description: Data of retention on medical specialists in Indonesia
DOI: 10.60893/figshare.apl.26076196.v1
title: Supplement material 1

description: The document provides a detailed description of the calculations of effective complex parameters and correction lengths, the impedance model of a Helmholtz resonator, the effect of the total area on acoustic properties, and the details of the experimental setup.
DOI: 10.6084/m9.figshare.28802603.v4
title: <b>A study on </b><b>driving behavior characteristics </b><b>and influencing factors of older drivers at </b><b>sianal-controlled and unsianal-controlled intersections</b>

description: <b>A study on </b><b>driving behavior characteristics </b><b>and influencing factors of older drivers at </b><b>sianal-controlled and unsianal-controlled intersections</b>
DOI: 10.6084/m9.figshare.21087025.v1
title: Supplementary Material for: Influences of the interactions of genetic variations of seven core circadian clock genes with lifestyle factors on metabolic parameters

description: Introduction: In mammals, circadian rhythms regulate many behavioral and physiological processes. Genetic and epidemiological studies have shown that dysregulation of the circadian rhythm induces chronic metabolic diseases, such as obesity, diabetes, and dyslipidemia. We aimed to know the interactions of genetic variations of seven core circadian clock genes with lifestyle factors on the determination of metabolic parameters. Methods: We have analyzed the impacts of genotype of seven core circadian clock genes (i.e., CLOCK, BMAL1, PER1, PER2, PER3, CRY1 and CRY2) and lifestyle factors (i.e., physical activity and sleep duration) in 575 Japanese males on the determination of metabolic parameters (i.e., BMI, glucose, HbA1c, LDL-C and HDL-C). Results: We have detected the associations between genotypes of PER3 and serum HbA1c level, and genotypes of CRY1 and serum LDL-C level. Additionally, the interactions of the genotypes of PER1 and PER3 with physical activity for determining BMI, the genotypes of CLOCK with physical activity for determining serum HbA1c levels, was observed. Furthermore, for determining of serum HDL-C levels, the interactions of the genotypes of CRY2 with physical activity or sleep duration was observed. Discussion/Conclusion: Our findings indicate that the interactions of genotypes for core circadian clock genes and lifestyle factors (i.e., physical activity and sleep duration) are important for determining of metabolic parameters.