cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p9n32v3m
title: Favorability of environmental conditions for coral reefs in Guam and American Samoa under multiple climate scenarios

description: This dataset consists of raster geotiff outputs of relative environmental favorability for coral growth and survival in the United States territories of Guam and American Samoa across 3 climate scenarios: Present, Intermediate Emissions (Representative Concentration Pathway 4.5), and Worst Case Emissions (Representative Concentration Pathway 4.5). These datasets were generated from a synthesis of spatial variability in many environmental conditions, including thermal stress, wave power, irradiance, chlorophyll concentrations, macroalgal cover, calcite concentrations, turbidity, and erosion. Input conditions were classified as "Managed" or "Non-managed" based on whether the condition could be managed at the island scale. Environmental favorability scores range from 0 to 1, with 0 representing the worst observed conditions for coral and 1 representing the best observed conditions within each territory and scenario. The full methods and results are described in detail in the parent manuscript, "Where favorable environmental conditions and resilient corals coincide: Guam and American Samoa" (2022).
DOI: 10.6084/m9.figshare.16797643
title: Aquatic-Terrestrial Urban Data

description: Dataset featuring chemical water quality, fluvial hydrogeomorphology, land cover/land use, riparian vegetation composition, emergent aquatic insect assemblage composition and stable isotope, and riparian tetragnathid spider density and stable isotope data.
DOI: 10.6084/m9.figshare.17027270
title: SMOKE_MNGMT_REQUESTS_DNR_REGIONS.csv

description: Data collected from the Washington Department of Natural Resources with locations and dates of planned and completed prescribed fires for the years 2000-2019. Data for the years 2000-2003 is questionable and was removed from the linked analysis.
DOI: 10.6084/m9.figshare.17027270.v1
title: SMOKE_MNGMT_REQUESTS_DNR_REGIONS.csv

description: Data collected from the Washington Department of Natural Resources with locations and dates of planned and completed prescribed fires for the years 2000-2019. Data for the years 2000-2003 is questionable and was removed from the linked analysis.
DOI: 10.6084/m9.figshare.16968319.v1
title: Alingment Datasets and Trees for the CyclOps and BeCNG1 proteins

description: Trees and aligned datasets used for phylogenetic reconstruction of the CyclOps pathway in Fungi
DOI: 10.25345/c5t85m
title: MassIVE MSV000088394 - Dynamic Assembly of the Cytosolic Iron-Sulfur Cluster Biogenesis Machinery Requires Iron-Sulfur Cluster Incorporation of CIAO3
title: Cytosolic iron-sulfur (Fe-S) cluster assembly (CIA) pathway delivers Fe-S clusters to nuclear and cytosolic Fe-S proteins involved in essential cellular functions. This delivery process is regulated by availability of iron and oxygen, but it remains unclear how CIA components orchestrate the cluster transfer under varying cellular environments. Here, we investigated the organization of CIA machinery under various conditions. We developed a targeted proteomics assay monitoring known CIA factors. Using this assay, we were able to detect NUBP1, CIAO3 and CIA substrates in immunoprecipitates of NUBP2, a component of the CIA scaffold complex. We also revealed that NUBP2 transiently associates with the CIA targeting complex (MMS19, CIAO1, CIAO2B), indicating the possible existence of CIA metabolons. We observed stronger interactions between CIAO3 and the CIA scaffold complex upon iron supplementation or low oxygen tension, while iron chelation and reactive oxygen species weaken CIAO3 interactions with CIA components. We further demonstrated that CIAO3 mutant with defective Fe-S cluster binding failed to integrate into the metabolons. However, these mutants unexpectedly exhibit stronger association with CIA substrates regardless of their reduced association with the CIA targeting complex, implicating that CIAO3 and CIA substrates may present in complexes independent of the CIA targeting complex. Together, our data suggested that CIA components potentially form metabolons whose assembly are regulated by environmental cues and require Fe-S cluster incorporation in CIAO3. These findings provided additional evidence that the CIA pathway adapts to changes in cellular environment through complex reorganization.
DOI: 10.15468/hwjajf
title: Solanum pulneyensis Soosairaj, sp. nov. (Solanaceae) from Palani Hills National Park of Tamil Nadu, India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Soosairaj, Sebastian, Raja, Prakasam, Balaguru, Balakrishnan, Tagore, Johny Kumar (2021): Solanum pulneyensis Soosairaj, sp. nov. (Solanaceae) from Palani Hills National Park of Tamil Nadu, India. Adansonia (3) 43 (21): 235-240, DOI: 10.5252/adansonia2021v43a21
DOI: 10.6084/m9.figshare.16797643.v1
title: Aquatic-Terrestrial Urban Data

description: Dataset featuring chemical water quality, fluvial hydrogeomorphology, land cover/land use, riparian vegetation composition, emergent aquatic insect assemblage composition and stable isotope, and riparian tetragnathid spider density and stable isotope data.
DOI: 10.5281/zenodo.5701372
title: Dataset: 800 QM/MM minimum energy pathway conformations for the acylation reactions of Toho-1/ampicillin and Toho-1/cefalexin

description: This dataset consists of 800 coordinate files (in the CHARMM psf/cor format) for the QM/MM minimum energy pathways of the acylation reactions between a Class A beta-lactamases (Toho-1) and two beta-lactam antibiotic molecules (ampicillin and cefalexin). These files are: toho_amp.r1-ae.zip: The R1-AE acylation pathways for Toho-1/Ampicillin (200 pathways); toho_amp.r2-ae.zip: The R2-AE acylation pathways for Toho-1/Ampicillin (200 pathways); toho_cex.r1-ae.zip: The R1-AE acylation pathways for Toho-1/Cefalexin (200 pathways); toho_cex.r2-ae.zip: The R2-AE acylation pathways for Toho-1/Cefalexin (200 pathways) The R1-AE pathways are the acylation uses Glu166 as the general base; the R2-AE pathways uses Lys73 and Glu166 as the concerted base. All QM/MM pathways are optimized at the DFTB3/3OB-f/CHARMM36 level of theory.
DOI: 10.5281/zenodo.5706077
title: SANER 2022 - Industrial Track - Investigating the Point of View of Project Management Practitioners on Technical Debt - A Preliminary Study on Stack Exchange

description: Dataset related to the paper Investigating the Point of View of Project Management Practitioners on Technical Debt - A Preliminary Study on Stack Exchange. Saner 2022 Industrial Track
DOI: 10.5281/zenodo.5706027
title: GeoERA RESOURCE H3O-PLUS data set which contains hydraulic properties of prime aquifers and aquitards in the Dutch-Flemish-German cross-border area

description: Dataset which contains information about hydraulic properties of harmonized hydrogeological units in the Dutch-Flemish-German cross-border region which was compiled in the GeoERA RESOURCE project under WP3 H3O-PLUS. The harmonization of the 3D geometry of the cross-border hydrogeological units in the H3O projects constituted a major step towards a common hydrogeological dataset of the Roer Valley Graben and thus the harmonization of groundwater flow models. The database that was compiled provides the characterization of these hydrogeological units with respect to their hydraulic properties, primarily their hydraulic conductivity.<br> The associated report and appendices describe the database of hydraulic properties of aquifers and aquitards based on common criteria. Attention is also given to the characterization of hydraulic properties of faults.
DOI: 10.5281/zenodo.5706026
title: GeoERA RESOURCE H3O-PLUS data set which contains hydraulic properties of prime aquifers and aquitards in the Dutch-Flemish-German cross-border area

description: Dataset which contains information about hydraulic properties of harmonized hydrogeological units in the Dutch-Flemish-German cross-border region which was compiled in the GeoERA RESOURCE project under WP3 H3O-PLUS. The harmonization of the 3D geometry of the cross-border hydrogeological units in the H3O projects constituted a major step towards a common hydrogeological dataset of the Roer Valley Graben and thus the harmonization of groundwater flow models. The database that was compiled provides the characterization of these hydrogeological units with respect to their hydraulic properties, primarily their hydraulic conductivity.<br> The associated report and appendices describe the database of hydraulic properties of aquifers and aquitards based on common criteria. Attention is also given to the characterization of hydraulic properties of faults.
DOI: 10.25345/c5pg5f
title: MassIVE MSV000088395 - One-pot Isotope Dilution PRM for Quantitative Protein Heterogeneity in Red Blood Cells
title: Instrument raw files and search files associated with the manuscript entitled "One-pot Isotope Dilution PRM for Quantitative Protein Heterogeneity in Red Blood Cells" authored by Azad Eshghi, Xiaofeng Xie, Darryl Hardie, Michael X. Chen, Kelly Curtis, Fabiana Izaguirre, Rachael Newman, Ying Zhu, Ryan T. Kelly and David R Goodlett.
DOI: 10.15468/mbf4r9
title: A new genus and seven new species of chrysopetalids (Annelida, Chrysopetalidae) from the Tropical Eastern Pacific

description: This dataset contains the digitized treatments in Plazi based on the original journal article Cruz-Gómez, Christopher (2021): A new genus and seven new species of chrysopetalids (Annelida, Chrysopetalidae) from the Tropical Eastern Pacific. Zootaxa 5068 (1): 1-59, DOI: https://doi.org/10.11646/zootaxa.5068.1.1
DOI: 10.5517/ccdc.csd.cc26jvk5
title: CCDC 2041987: Experimental Crystal Structure Determination

description: Related Article: Amandine Roux, Romain Talon, Zaynab Alsalman, sylvain Engilberge, Anthony D'Aleo, Sebastiano Di Pietro, Adeline Robin, Alessio Bartocci, Guillaume Pilet, Elise Dumont, Tristan Wagner, Seigo Shima, François Riobé, Eric Girard, Olivier Maury|2021|CSD Communication|||
description: Related Article: Amandine Roux, Romain Talon, Zaynab Alsalman, Sylvain Engilberge, Anthony D’Aléo, Sebastiano Di Pietro, Adeline Robin, Alessio Bartocci, Guillaume Pilet, Elise Dumont, Tristan Wagner, Seigo Shima, François Riobé, Eric Girard, Olivier Maury|2021|Inorg.Chem.|60|15208|doi:10.1021/acs.inorgchem.1c01635
DOI: 10.5517/ccdc.csd.cc28d865
title: CCDC 2097156: Experimental Crystal Structure Determination

description: Related Article: Naokazu Kano, Nathan J. O'Brien, Kosuke Aoki, Yui Matsuda, Tatsuya Morofuji|2021|Dalton Trans.|50|16003|doi:10.1039/D1DT02646A
DOI: 10.5517/ccdc.csd.cc28d876
title: CCDC 2097157: Experimental Crystal Structure Determination

description: Related Article: Naokazu Kano, Nathan J. O'Brien, Kosuke Aoki, Yui Matsuda, Tatsuya Morofuji|2021|Dalton Trans.|50|16003|doi:10.1039/D1DT02646A
DOI: 10.5517/ccdc.csd.cc28dmbn
title: CCDC 2097501: Experimental Crystal Structure Determination

description: Related Article: Javier A. Cabeza, Israel Fernández, Pablo García-Álvarez, Rubén García-Soriano, Carlos J. Laglera-Gándara, Rubén Toral|2021|Dalton Trans.|50|16122|doi:10.1039/D1DT02967C
DOI: 10.5517/ccdc.csd.cc28dmcp
title: CCDC 2097502: Experimental Crystal Structure Determination

description: Related Article: Javier A. Cabeza, Israel Fernández, Pablo García-Álvarez, Rubén García-Soriano, Carlos J. Laglera-Gándara, Rubén Toral|2021|Dalton Trans.|50|16122|doi:10.1039/D1DT02967C
DOI: 10.5517/ccdc.csd.cc28gv2p
title: CCDC 2099632: Experimental Crystal Structure Determination

description: Related Article: Roman Kimmich, Claudio Schrenk, Andreas Schnepf|2021|Dalton Trans.|50|16013|doi:10.1039/D1DT02591K
DOI: 10.5517/ccdc.csd.cc28gv3q
title: CCDC 2099633: Experimental Crystal Structure Determination

description: Related Article: Roman Kimmich, Claudio Schrenk, Andreas Schnepf|2021|Dalton Trans.|50|16013|doi:10.1039/D1DT02591K
DOI: 10.5517/ccdc.csd.cc28gv4r
title: CCDC 2099634: Experimental Crystal Structure Determination

description: Related Article: Roman Kimmich, Claudio Schrenk, Andreas Schnepf|2021|Dalton Trans.|50|16013|doi:10.1039/D1DT02591K
DOI: 10.5517/ccdc.csd.cc28gxvj
title: CCDC 2099718: Experimental Crystal Structure Determination

description: Related Article: Andreas Reiß, Carsten Donsbach, Claus Feldmann|2021|Dalton Trans.|50|16343|doi:10.1039/D1DT02523F
DOI: 10.5517/ccdc.csd.cc28gxwk
title: CCDC 2099719: Experimental Crystal Structure Determination

description: Related Article: Andreas Reiß, Carsten Donsbach, Claus Feldmann|2021|Dalton Trans.|50|16343|doi:10.1039/D1DT02523F
DOI: 10.5517/ccdc.csd.cc28hylb
title: CCDC 2100702: Experimental Crystal Structure Determination

description: Related Article: Jian-Ce Jin, Ting-Hui Zhuang, Yang-Peng Lin, Bing-Ye Lin, Jiang Jiang, Ke-Zhao Du, Xiao-Ying Huang|2021|Dalton Trans.|50|16406|doi:10.1039/D1DT03264J
DOI: 10.5517/ccdc.csd.cc28hymc
title: CCDC 2100703: Experimental Crystal Structure Determination

description: Related Article: Jian-Ce Jin, Ting-Hui Zhuang, Yang-Peng Lin, Bing-Ye Lin, Jiang Jiang, Ke-Zhao Du, Xiao-Ying Huang|2021|Dalton Trans.|50|16406|doi:10.1039/D1DT03264J
DOI: 10.5517/ccdc.csd.cc28hynd
title: CCDC 2100704: Experimental Crystal Structure Determination

description: Related Article: Jian-Ce Jin, Ting-Hui Zhuang, Yang-Peng Lin, Bing-Ye Lin, Jiang Jiang, Ke-Zhao Du, Xiao-Ying Huang|2021|Dalton Trans.|50|16406|doi:10.1039/D1DT03264J
DOI: 10.5517/ccdc.csd.cc28j22z
title: CCDC 2100810: Experimental Crystal Structure Determination

description: Related Article: Atsushi Kobayashi, Shin-ichiro Imada, Yuze Yao, Yuki Nagao, Yuto Kubota, Masaki Yoshida, Masako Kato|2021|Bull.Chem.Soc.Jpn.|94|2466|doi:10.1246/bcsj.20210279
DOI: 10.15468/ry3txm
title: Discovery of the first leaf litter inhabiting flea beetles in Brazil (Coleoptera: Chrysomelidae: Galerucinae) with description of two new genera and three new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article De Oliveira, Denize Wgliana G., Linzmeier, Adelita M., Konstantinov, Alexander S. (2021): Discovery of the first leaf litter inhabiting flea beetles in Brazil (Coleoptera: Chrysomelidae: Galerucinae) with description of two new genera and three new species. Zootaxa 5068 (1): 99-114, DOI: https://doi.org/10.11646/zootaxa.5068.1.4
DOI: 10.6084/m9.figshare.17009114
title: results stat.sav

description: statistics results for induction of liver fibrosis in rats using TAA and treatment with GA as inhibitor of HMGB1 to activate inhibition of Beclin1 to Bec2 and inhibition of autophagosome formation
DOI: 10.6084/m9.figshare.17009114.v1
title: results stat.sav

description: statistics results for induction of liver fibrosis in rats using TAA and treatment with GA as inhibitor of HMGB1 to activate inhibition of Beclin1 to Bec2 and inhibition of autophagosome formation
DOI: 10.15468/njmdav
title: Bambusa gurgandii K. M. Wong & M. H. Diep (Poaceae, Bambusoideae), a new species of bamboo from Vietnam

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wong, Khoon Meng, Diep, My Hanh (2015): Bambusa gurgandii K. M. Wong & M. H. Diep (Poaceae, Bambusoideae), a new species of bamboo from Vietnam. Candollea 70 (2): 211-218, DOI: 10.15553/c2015v702a6
DOI: 10.15468/sk4jcu
title: First record of the snail-killing fly genus Dichetophora Rondani (Diptera: Sciomyzidae) in Korea, with descriptions of two new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Son, Yeongjin, Suh, Sang Jae (2021): First record of the snail-killing fly genus Dichetophora Rondani (Diptera: Sciomyzidae) in Korea, with descriptions of two new species. Zootaxa 5068 (1): 125-132, DOI: https://doi.org/10.11646/zootaxa.5068.1.6
DOI: 10.15468/wxcy9p
title: Two new genera and six new species of Stenosini (Coleoptera: Tenebrionidae Pimeliinae) from Myanmar (Burma), collected by René Fouquè

description: This dataset contains the digitized treatments in Plazi based on the original journal article Schawaller, Wolfgang, Bigalk, Sonia (2021): Two new genera and six new species of Stenosini (Coleoptera: Tenebrionidae Pimeliinae) from Myanmar (Burma), collected by René Fouquè. Zootaxa 5068 (1): 133-141, DOI: https://doi.org/10.11646/zootaxa.5068.1.7
DOI: 10.15468/jg2q58
title: Myxobolus opsaridiumi sp. nov. (Cnidaria: Myxosporea) infecting different tissues of an ornamental fish, Opsaridium ubangiensis (Pellegrin, 1901), in Cameroon: morphological and molecular characterization

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lekeufack-Folefack, Guy Benoit, Tchoutezo-Tiwa, Armandine Estelle, Fomena, Abraham, Mansour, Lamjed (2021): Myxobolus opsaridiumi sp. nov. (Cnidaria: Myxosporea) infecting different tissues of an ornamental fish, Opsaridium ubangiensis (Pellegrin, 1901), in Cameroon: morphological and molecular characterization. European Journal of Taxonomy 733: 56-71, DOI: https://doi.org/10.5852/ejt.2021.733.1221
DOI: 10.15468/7mz2zx
title: A review of the Bironium Csiki, 1909 (Coleoptera: Staphylinidae: Scaphidiinae) of New Guinea and the Moluccas

description: This dataset contains the digitized treatments in Plazi based on the original journal article Löbl, Ivan (2021): A review of the Bironium Csiki, 1909 (Coleoptera: Staphylinidae: Scaphidiinae) of New Guinea and the Moluccas. Acta Musei Moraviae 106 (2): 227-248, DOI: http://doi.org/10.5281/zenodo.5706173
DOI: 10.17632/f3h8yn7k53.1
title: Conspiracy

description: "From Fringe to Mainstream" dataset
DOI: 10.17632/875kgw4ynn.1
title: Bistable flow data from the wake behind two parallel cylinders with P/D = 1.26 and various Reynolds numbers

description: Data result from careful measurements with hot wires in an aerodynamic channel to study the phenomenon of the bistability in the wake of two parallel cylinders submitted to a turbulent cross flow. The cylinders were made from commercial PVC (PolyVinyl Chloride) with 25.1 mm diameter and pitch-to-diameter ratio p/d = 1.26.
The experimental time series were acquired in one of the aerodynamic channels of the Fluid Mechanics Laboratory of UFRGS. The channel is made of acrylic glass, with a rectangular test section of 0.146 m height, width of 0.193 m, and 0.9 m length. The airflow is driven by a centrifugal fan with 0.75 kW and passes through two honeycombs and two screens to reduce the turbulence intensity to about 1% of the free stream velocity in the test section. Upstream the test section, placed in one of the sidewalls, a Pitot tube measures the reference velocity of the impinging flow. This velocity is approximately the average velocity in the channel used for the determination of the Reynolds number. The Reynolds numbers (Re) of the experiments were 7220, 11417, 14434, 15494, 19442, and 23258, based on the cylinder diameter and the air properties at room temperature.
The axial component of the wake flow velocity behind the cylinder set and its fluctuations was measured with a DANTEC StreamLine constant hot-wire anemometer equipped with a DANTEC 55P11 single wire probe. The sampling frequency was 1 kHz, with a low pass filter at 300 Hz, and the time acquisition was 65,536 s. Data acquisition was performed by a USB 16-bit NI USB-9162 A/D board.

	Instantaneous velocity values for each Reynolds number: time (s), wake flow velocity (m/s).
Re_7720.txt
Re_11417.txt
Re_14434.txt
Re_15494.txt
Re_19442.txt
Re_23258.txt
DOI: 10.17632/433nd5fhts.1
title: Infertility in Ghana

description: It has the following objectives: to identify the categories of people utilizing low tech, medical herbalists and high tech fertility treatments, to understand the motivations behind their treatment seeking, to understand what determines their treatment choice as well as the contestations that exist between couples and other actors over treatment choices and how they are resolved. In addition, the study explored the processes that respondents follow in seeking treatment and reported on the social, religious and cultural context surrounding the use of ARTs as evidenced in respondents’ ways of navigating around components of ART treatment.
The respondents for the study were purposively selected from three sites namely a private herbal clinic, a government hospital and a private orthodox fertility clinic which utilises Assisted Reproductive Technologies (i.e. IVF, ICSI etc). These clinics are located in the capital, Accra. Based on qualitative in-depth interview data obtained through convenience sampling of 45 respondents and nine key informants, the study noted the following: infertile men and women continue to desire to become biological parents based on both societal considerations and personal desires. Specifically, factors such as marital security, children as social security and for purposes of inheritance and social status were at play. In addition, although the health seeking behaviour of respondents was influenced by both kin and non-kin actors, some respondents showed a degree of autonomy in the final decision taken regarding treatment. Explanations provided for the cause of infertility by both respondents and their friends and relatives led them to seek treatment from either the biomedical or spiritual healer. However, where such treatment options were unfavourable and/or did not achieve the desired results, some respondents moved from herbal treatment to orthodox treatment and vice versa. In addition, they intensified their efforts at obtaining healing by complementing biomedical healing with spiritual healing. Finally, respondents accessing ART treatment were found to select aspects of the treatment procedure that created the least forms of dissonance for them based on socio-cultural, religious and personal considerations. The use of these technologies were not seen as conflicting with religious beliefs as in most cases, respondents drew on religion to explain treatment successes and failures.
The study therefore recommends, amongst other things, that medical herbalism should be developed due to the continued reliance on herbal treatment. Some infertility treatments should also be considered for incorporation into the National Health Insurance scheme to improve access and reduce the burden of infertility. People also need to be well informed about treatment options while reducing the negative effects of media advertising.
DOI: 10.17632/7s8sng9yn8.2
title: Baseline lower lymphocyte count predicts faster APOE ε4-related longitudinal cognitive decline in Parkinson’s Disease

description: The R-scripts and obtained tables used for the manuscript, entitled "Baseline lower lymphocyte count predicts faster APOE ε4-related longitudinal cognitive decline in Parkinson’s Disease".
DOI: 10.18434/mds2-2394
title: Supporting information to accompany: Super-Ancillary Equations for Cubic Equations of State
DOI: 10.17632/vbxd3mzr25.1
title: Antibiotics impact on nitrogen and carbon cycle processes

description: Raw data for NH4+, NO3-, CH4,CO2, N2O, N2 data and production rates
DOI: 10.17632/yjn6gtwcdb.1
title: Ensemble methods for HEAs

description: The data repository contains the dataset on high entropy alloys (HEAs) and the code files related to the phase prediction of HEAs using ensemble based machine learning models.