cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/487x8frj4w
title: W4-11-GEOM database

description: Contents: The W4-11-GEOM database contains CCSD(T)/jul-cc-pV(6+d)Z reference geometries for all the molecules apart from the following larger 14 larger organic molecules, for which the reference geometries are obtained at the CCSD(T)/jul-cc-pV(5+d)Z level of theory: acetaldehyde.xyz, acetic.xyz, c2h3f.xyz, c2h5f.xyz, ch2ch.xyz, ch2nh2.xyz, ch3nh.xyz, ch3nh2.xyz, ethanol.xyz, formic.xyz, methanol.xyz, propane.xyz, propene.xyz, and propyne.xyz. Description: The W4-11-GEOM database includes 122 species, which cover a broad spectrum of bonding situations with a range of single and multiple bonds that involve varying degrees of covalent and ionic characters. The reference geometries have been optimized on the electronic potential energy surface (PES) at the CCSD(T)/jul-cc-pV(6+d)Z level of theory, except for a small subset of larger molecules with low spatial symmetries for which the reference geometries were optimized at the CCSD(T)/jul-cc-pV(5+d)Z level of theory. The W4-11-GEOM dataset includes 85 closed shell, 21 radical, 9 singlet carbene, and 7 triplet species. In terms of elemental composition, the dataset includes 88 first-row species (containing H and B–F), 17 second-row species (containing H and Al–Cl), and 17 mixed first- and second-row species (containing H, B–F, and Al–Cl atoms). Overall, the database includes 246 symmetry-unique bonds and 133 key bond angles: 96 X-Y-H, 22 X-Y-Z, and 15 H-X-H angles. In terms of bond distances, it includes 117 single bonds involving hydrogen (H–X), 65 single bonds between non-hydrogen atoms (X–Y), 49 double bonds (X=Y), and 15 triple bonds (X≡Y), where X and Y are non-hydrogen atoms from the first and second rows of the Periodic Table. For further details see: P. R. Spackman, D. Jayatilaka, A. Karton, J. Chem. Phys. 145, 104101 (2016). http://dx.doi.org/10.1063/1.4962168
DOI: 10.6084/m9.figshare.16826239.v1
title: Data for: Functional traits of alpine plant communities show long-term resistance to changing herbivore densities.

description: This dataset includes three files: for Hol, for Setesdal mainland and for Setesdal islands. The files include covariates (Grazing treatment, Elevation, Year) and response variables (Height.gen, Height.veg, SLA, Seed.number.per.plant, Seed.dry.mass, Leaf.dry.mass, Leaf.area, LDMC, Woodiness), produced as described in the publication"Functional traits of alpine plant communities show long-term resistance to changing herbivore densities" by Katariina E. M. Vuorinen, Gunnar Austrheim, Atle Mysterud, Ragnhild Gya, Vigdis Vandvik, John-Arvid Grytnes & James D. M. Speed in Ecosphere 2021.<br>
DOI: 10.6084/m9.figshare.25395514.v2
title: Data and code for "Genetically correlated leaf tensile and morphological traits are driven by<b> </b>growing season length in a widespread perennial grass"

description: Leaf tensile resistance, a leaf’s ability to withstand pulling forces, is an important determinant of plant ecological strategies. One potential driver of leaf tensile resistance is growing season length. When growing seasons are long, strong leaves—which often require more time and resources to construct than weak leaves—may be more advantageous than when growing seasons are short. Growing season length and other ecological conditions may also impact the morphological traits that underlie leaf tensile resistance. To understand variation in leaf tensile resistance, we measured size-dependent leaf strength and size-independent leaf toughness in diverse genotypes of the widespread perennial grass <i>Panicum virgatum</i> (switchgrass) in a common garden. We then used quantitative genetic approaches to estimate the heritability of leaf tensile resistance and whether there were genetic correlations between leaf tensile resistance and other morphological traits.
DOI: 10.6084/m9.figshare.29092694.v1
title: tRFs in ICP

description: This study employs small RNA sequencing to profile differentially expressed tRFs between a ICP group and a control group .Subsequently, the differentially expressed genes(DEGs) were evaluated by Gene GO and KEGG pathway enrichment to reveal the associated functions.
DOI: 10.6084/m9.figshare.6322817.v1
title: 1D_model_time_outflow_2.csv

description: For Figure 8(a):<br>Initial contact area ratio Rc0: 1.90%; <br>Initial mean mechanical aperture bm0: 9.1147 micro;
DOI: 10.17632/8mg5rwfnx8
title: Enhancing Artful Rainwater Design with Computational Tools for Small-Scale Hydrology

description: Here are the sample results of the computer simulations and physical Experiments and videos as their outcomes.
DOI: 10.17632/mr3grh4x23
title: MoSC_ComMaterSci

description: Setup for optimizations of crystalline and small amorphous MoC and MoSC models Setup for annealing MoSC structures, plus the structures themselves
DOI: 10.17632/wyx7mrt3mm
title: Phone-Based Breast-Self-Examination As An Intervention In Breast Cancer Control  During The Covid 19 Pandemic

description: A study was done to investigate the effectiveness of phone-based Breast Self Examination(BSE) to detect early breast cancer among a cohort of already screened women. The descriptive data of the screened participants and the outcome of the phone-based intervention is presented in the dataset
DOI: 10.6084/m9.figshare.1018703.v1
title: Window data set

description: Temperature data from a WSN node located indoors, by a window. 5000 data points, 1 per minute.
DOI: 10.6084/m9.figshare.17303804.v1
title: Systems Genetics in Human Endothelial Cells Identifies Non-coding Variants Modifying Enhancers, Expression, and Complex Disease Traits: Summary Statistics

description: Summary statistics for the QTL analyses present in "Systems Genetics in Human Endothelial Cells Identifies Non-coding Variants Modifying Enhancers, Expression, and Complex Disease Traits" published in 2020 in AJHG. <br><br>Data includes multiple treatments listed within the file names. <br><br><b>eQTL data</b> was produced by taking rpkm normalized expression data (RNA-seq) or log normalized expression data (Microarray), and running these through matrixeQTL correcting for the top 4 PCs from a PCA on he genotypes (to correct for ancestry), genetic sex, and 15 factors (RNA-seq) or 30 factors (Microarray) from PEER. FDRs were calculated per each phenotype, so each SNP had its pvalue adjusted via Benjamini-Hochberg correction for all other SNPs tested for that transcript's expression.<br>Columns provided:SNP - rsID of the SNP (some may also list position and alleles following a ":")Gene - Refseq ID of the gene tested [aka. NM_XXXXX]Ref - the reference allele for this SNP in our studyAlt - the alternate allele for this SNP in our studyCrude.pvalue - The pvalue with no correctionFDR - the gene-level corrected pvalue as described aboveBeta - the beta of the association (- means ref is higher expression)<br><br><b>molQTL data</b> was produced by taking rpkm normalized data, as well as allele specific counts for ATAC-seq (chromatin accessibility) and ChIP-seq (ERG binding, p65 binding, H3K27ac) and running them through the program RASQUAL. The Q-values were produced by RASQUAL on a per peak basis, meaning SNPs were corrected for all the other SNPs tested against the reads from a single peak.<br>Columns provided:SNP - rsID of the SNP (some may also list position and alleles following a ":")Chrom -The chromosome the peak and SNP are locatedStartPeak - The starting position of the peak in hg19EndPeak - The end position of the peak in hg19<br>Ref - the reference allele for this SNP in our studyAlt - the alternate allele for this SNP in our studyQ-value - the peak-level corrected p-value as described aboveASR - the allele specific ratio of the association (less than 0.5 mean the ref has higher reads, greater than .5 means the alt has higher reads [all within Heterozygous individuals])
DOI: 10.6084/m9.figshare.8298152.v1
title: dibujos-mascotas-golden-retriever.jpg

description: <br>Galería del retrato es un sitio creado para ofrecerte retratos por encargo de alta calidad, realizados con la máxima profesionalidad.
DOI: 10.6084/m9.figshare.12465263.v1
title: Data supporting Windels et al. Molecular Biology and Evolution

description: These data support the paper "Population bottlenecks strongly affect the evolutionary dynamics of antibiotic persistence"
DOI: 10.6084/m9.figshare.12738476.v2
title: Vanni et al. 2020 Figure-data

description: Data used to generate the main figures in the Vanni et al. 2020 paper.<br>The code to reproduce the figure can be found at https://github.com/functional-dark-side/vanni_et_al-figures
DOI: 10.6084/m9.figshare.17013740.v1
title: SIPs of the IEEE 24-bus and 118-bus systems

description: SIPs of substations
DOI: 10.6084/m9.figshare.3858351.v1
title: The Origin of Mars' Crater Names

description: This is a list of small (&lt;60km) craters on Mars named after cities, towns, and villages around the world aimed specifically at finding the origin or meaning of the name.
DOI: 10.6084/m9.figshare.7813901.v1
title: Source Data Figure 3 .xlsx

description: <b>b, d, </b>the corresponding Osteoarthritis Research Society International (OARSI) scores from normal, sham, veh (vehicle)-treated, and BNTA-treated rats at 4 w and 8 w (n = 8 for each group; nonparametric test). <b>e, </b>Pain response times when rats were placed on the 55 °C hot plate meter at 4 w and 8 w post-surgery (n = 8 for each group, one-way ANOVA). <b>f, </b>The difference between the weight placed on the contralateral sham (left) hindlimb and the weight placed on the anterior cruciate ligament transection (ACLT, right) one at 4 w and 8 w post-surgery (n = 8 for each group, one-way ANOVA). Each data point represents one individual rat. All data are shown as the mean ± standard deviation (s. d.). *<i>P</i> &lt; 0.05, **<i>P</i> &lt; 0.01, ***<i>P</i> &lt; 0.001.
DOI: 10.6084/m9.figshare.27370992.v1
title: <b>Species turnover within cystic fibrosis lung microbiota is indicative of acute pulmonary exacerbation onset</b>

description: Longitudinal microbiota data with summarized clinical data of 12 adults with cystic fibrosis (CF) followed across a pulmomary exacerbation (PEx).The data here is being utilised in a retropsective study on personalised microbiome ecology approaches across PEx events.The prospective study that this data was origninally colelcted for is published as: Cuthbertson et al (2016) ISME J v10, pp1081–1091 (https://doi.org/10.1038/ismej.2015.198).
DOI: 10.6084/m9.figshare.5539213.v1
title: Model Scripts and Support Files

description: The master code and setup files for the hybrid analytical - finite element model defective bearing model is in this file. The model is a SImuLink model that the setup and is ran from a MatLab script. Please the read the ReadMe file as this contains all the information to run the model and modify the model to change loads, speeds, element density and much more.
DOI: 10.6084/m9.figshare.7507442.v1
title: Quality Practices, Corporate Social Responsibility and the “Society Results” Criterion of the EFQM Model

description: Abstract Purpose: The purpose of this research is to analyze whether quality management practices implemented and carried out by the rural accommodation establishments under study influence society results obtained by organizations, which are understood as the participation therein and the development of local community. Design/methodology/approach: The working methodology consists of carrying out an exploratory and confirmatory factor analysis in order to test the psychometric properties of measurement scales, and the hypothesized relationships between critical factors and society results are examined using structural equation modeling. Findings: The study provides evidence of a weak relationship between the critical factors of quality and society results in rural accommodation establishments. The results suggest that process management is the only quality practice that has a direct effect on society results and the rest of the critical factors are considered antecedents of it. Originality/value: The contribution of this study, which explores the impact of the critical factors of quality on society results, is to confirm that there is an effect of the critical factors of quality on society results (social and environmental responsibilities) through the direct relationship of process management. Very few studies examine this relationship.
DOI: 10.6084/m9.figshare.9958946.v2
title: EEG raw data.zip

description: This file contains the EEG raw data of 14 participants in the laboratory experiment and of 89 participants in the fieldwork in Nangok-dong. As stated in the manuscript, this EEG dataset was analysed to investigated valence values that show positive/negative emotions. This data was analysed by MATLAB and EEGLAB. The EEG raw data of 10 participants in the fieldwork were removed in the final analysis due to the issue of poor connection between laptop and EEG device.
DOI: 10.6084/m9.figshare.12941705.v1
title: Dai and Karato Experimental Data.xlsx

description: Dai and Karato Experimental Data.xlsx
DOI: 10.6084/m9.figshare.20464293.v1
title: Emihu2 ORF finding procedure

description: ORF finding procedure used in Skeffington et al <em>Emiliania huxleyi</em> proteomics paper. Includes input data and R scripts. For details see the README file in the archive and the pre-print / publication.
DOI: 10.6084/m9.figshare.25112129.v1
title: ESSENZ_and_ESSENZ_PLUS_CFs

description: Characterization factors for ESSENZ and ESSENZ Plus are provided for all categories, which can be directly used in case studies.
DOI: 10.6084/m9.figshare.28765742.v1
title: Data - Paper: Beyond color extraction: how pulsed electric fields and sulfites affect phenolic and volatile compounds of Primitivo red wine

description: These data refer to the research article entitled "Beyond color extraction: how pulsed electric fields and sulfites affect phenolic and volatile compounds of Primitivo red wine" by Mirella Noviello, Giusy Rita Caponio, Giuseppe Corcione, Luigi Tarricone, Rosanna Milella, Francesco Mazzone, Luciano Mescia, Claudio Lamacchia, Fatima Zohra Makhlouf, Massimo Tripaldi, Vito Michele Paradiso, Gabriele Fioschi, Giacomo Squeo
DOI: 10.17632/98sjsftv37
title: Data for: Ex-situ catalytic upgrading of vapors from microwave-assisted pyrolysis of bamboo with chemical liquid deposition modified HZSM-5 to enhance aromatics production

description: Supplementary material related to“Ex-situ catalytic upgrading of vapors from microwave-assisted pyrolysis of bamboo with chemical liquid deposition modified HZSM-5 to enhance aromatics production”
DOI: 10.17632/xhw98n454v
title: Raw data for C. vulgaris Algal Research paper

description: All the raw data is in this excel file
DOI: 10.6084/m9.figshare.12408197.v1
title: Protopterus aethiopicus DICE microCT data for Mandibular musculature constrains brain-endocast disparity in sarcopterygians

description: The specimen was stained in IKI using the method of Metscher (2009) for three months.<br> Micro-CT (uCT) scans were obtained using a Feinfocus 10-160kV transmission X-ray source and a Perkin Elmer XRD0822 1 MP flat panel X-ray camera. The peak energy used was 120kV, and 2 second exposures were corrected with offset and gain images. The resulting exposures were reconstructed as a tif stack using OctopusV9 resulting in a voxel size of 87.3.
DOI: 10.6084/m9.figshare.17121941.v1
title: unet_T_d_1.89_LP.tif

description: unet_T_d_1.89_LP
DOI: 10.6084/m9.figshare.22012370.v1
title: Supplementary files for Kawato et al. (2023) "Integrase-associated niche differentiation of endogenous large DNA viruses in crustaceans"

description: Supplementary files for Kawato et al. (2023) "Integrase-associated niche differentiation of endogenous large DNA viruses in crustaceans"https://doi.org/10.1128/spectrum.00559-23<b>Supplementary_File_1_wsv308.zip</b>: ColabFold structural predictions of wsv308-like proteins.<b>Supplementary_File_2_wsv310.zip</b>: ColabFold structural predictions of wsv310-like proteins.<b>Supplementary_File_3_TrCLPV.zip</b>: Metagenome-assembled genome, predicted protein sequences, and annotation of Trachelipus rathkii clopovirus.<b>Supplementary_File_4_PotrWSV.zip</b>: Metagenome-assembled genome, predicted protein sequences, and annotation of Portunus trituberculatus whispovirus.<b>Supplementary_File_5_FdMJNV.zip</b>: Metagenome-assembled genome, predicted protein sequences, and annotation of Litopenaeus stylirostris majanivirus.<b>Supplementary_File_6_LsMJNV.zip</b>: Metagenome-assembled genome, predicted protein sequences, and annotation of Farfantepenaeus duorarum majanivirus.<b>Supplementary_File_7_Metapenaeopsis_lamellata.zip:</b> Mitochondrial genome sequence of Metapenaeopsis lamellata.<b>Supplementary_File_8_Sicyonia_sp_Fukuoka2019.zip: </b>Mitochondrial genome sequence of Sicyonia sp. Fukuoka2019.<b>Supplementary_File_9_bioinformatic_codes.html</b>: Exemplar bioinformatic codes used in this study.
DOI: 10.6084/m9.figshare.23587128.v1
title: RSeqFlow-OlivePollen5 - Annotation extension for Picual DEGs with more TAIR10 orthologues. Two files: a) DEG-annot-extension.pdf and b) orthology-Picual-TAIR10-extended-230608.tsv

description: a) The <strong>PDF</strong> contains the biscussion about the results obtained with the extended annotation of DEGs using <em>DIAMOND</em> to assign a TAIR 10 orthologue to unnanotated Picual transcripts. <br> b) The <strong>tsv file </strong>is a tab separated list of Picual v0.61 IDs with TAIR10 IDs of <em>A. thaliana</em> using the orthology downloaded from OliveTreeDB (https://genomaolivar.dipujaen.es/downloads/Annotations/Olea_europaea_v061_annotations.xlsx) extended for the TAIR10 IDs found using <em>DIAMOND</em>.
DOI: 10.6084/m9.figshare.25058561.v1
title: Supplementary File 2 Cluster aging-related DEGs.xlsx

description: Deferentially expressed genes in each CNS cell cluster with age.
DOI: 10.6084/m9.figshare.29109104.v1
title: <b>SDNet: A General Framework for SWOT Denoising and Water Body Extractio</b><b>n</b>

description: Dynamic water resource monitoring is essential for global sustainable development. Although the Surface Water and Ocean Topography (SWOT) satellite enables global water body observation, its Ka-band radar interferometer introduces noise and systematic errors, resulting in stripe noise and spatial heterogeneity. This study proposes SDNet, a high-precision water extraction framework based on the Transformer architecture. SDNet was validated in the Longyangxia Reservoir, Khukh Lake, and Kherlen River, showing strong performance in mitigating stripe noise, voids, and edge gaps. Prediction results were further used to analyze seasonal variations and driving factors of inland water bodies. Experimental findings show: (1) SDNet achieved high accuracy across different water body scales. For large-scale bodies, the Water Intersection Ratio (WIR) and Background Intersection Ratio (BIR) improved by 23.68% and 45.96%, respectively. For medium-scale bodies, WIR rose by 2.83%, and for small-scale bodies, by 3.57 times. (2) Altimetry error correlated positively with cross-track distance. The 250 m resolution data had a lower error (0.038 m) than the 100 m data (0.052 m), with median relative error between 10<sup>-5</sup>% and 10<sup>-4</sup>%. (3) Precipitation primarily drove water level changes in Longyangxia Reservoir, while ice-jam floods and topography influenced Khukh Lake and the Kherlen River.
DOI: 10.6084/m9.figshare.1226568.v1
title: Experimental Design Dataset

description: In a group of 5, a 50m transect was laid out from the edge of a pond to the edge of a grassland. At each 10m interval (including the 0m interval), 2 quadrats were laid out; one on each side of the transect. The species of plants in each quadrat were recorded along with the average height of the species between the 2 quadrats (measured in inches using a measuring tape) as well as the average coverage of each species between the 2 quadrats (estimated as a percentage). This process was repeated for the area between the edge of the same pond and the edge of a road (disturbance).
DOI: 10.6084/m9.figshare.13030970.v4
title: Thermal conductivity of brucite

description: This table contains the thermal conductivity datasets for Figure 2 and Figure 3 used in the paper:"<i>Thermal anomaly in the shallow lower mantle induced by decomposition of brucite to periclase</i>"<br>2020JB021254<br><br><br><br>
DOI: 10.6084/m9.figshare.17109353.v1
title: count-data-fat SCAT-annotated.rds

description: tissue-specific single-cell read count data showing the changes with parabiosis
DOI: 10.6084/m9.figshare.7507364.v1
title: ANGLO-SAXON IMPERIALISM THROUGH CULTURAL GOODS: TITLES SUGGESTED FOR YOUNG READERS IN PORTUGAL

description: Abstract Translation plays a vital role in the current multilingual and multicultural society. It is a fundamental infrastructure of globalization, functioning as an essential tool for the circulation of information, knowledge, and culture. Although English can be considered a lingua franca in certain sectors of society, the role of translation has not lessened with its rise. In fact, translation is a strong indicator of the relationships established between countries: international translation flows depend on the (im)balances of power in the world. In this paper I analyse relevant data to ascertain the weight of works originally written in English and translated into Portuguese, resorting to the national reading plan (PNL). After briefly addressing the influence of geopolitics in the trade of cultural goods and describing the world system of translation, I analyse the list of 345 books suggested in the national reading plan for 12-15 year olds. Almost half of these books are translations; however, this does not imply that the list is sufficiently multicultural, quite on the contrary as it shows the dominance of books written in English. A lot more can be done to diversify the source languages and expose Portuguese young readers to a wider variety of cultures.
DOI: 10.6084/m9.figshare.19786276.v2
title: GillnetSelectivity

description: Gillnet selectivity is poorly known for most freshwater fish species, particularly for invasive alien species. However, their use to determine mesh selectivity could be essential for establishing management measures, such as selectively remove exotic invasive species. This study aims to assess size selectivity of exotic invasive species in a restored lentic freshwater ecosystem. So, we have analysed gillnet size selectivity based on experimental fishing trials performed by using multimesh gillnets. Twice a year, for 8 years, multimesh nylon gillnets were set up in the Estany d’Ivars i Vila-sana, a restored shallow lake in Catalonia (NE Iberian Peninsula). We caught 4105 individuals belonging to 3 widely-distributed freshwater fish species – 3583 pikeperches (<em>Sander lucioperca </em>(Linnaeus, 1758)), 115 common roaches (<em>Rutilus rutilus </em>(Linnaeus, 1758)) and 407 common carps (<em>Cyprinus carpio</em>, Linnaeus, 1758). The SELECT method was applied to fit six different gillnet selectivity uni- and bimodal models. As a result, bi-lognormal provides the best fit for the 3 species. This is in line with previous studies that found size-frequency data skewed to the right or to multimodal models when high numbers of fish are captured. These results provide the essential information to fish community management with the presence of these invasive alien species.
DOI: 10.6084/m9.figshare.5972692.v2
title: A model to estimate seabird field metabolic rates: Phylogeny

description: The phylogeny used for the analyses.
DOI: 10.6084/m9.figshare.c.3613583_d1.v1
title: Additional file 2: Table S2. of Fatty acid kinase A is an important determinant of biofilm formation in Staphylococcus aureus USA300

description: Complete list of SNPs in genes representing divergent alleles in UAS391 and FPR3757 and their putative gene functions. FPR3757 was used as a reference for comparison with the allelic change in UAS391. Nucleotide changes in bold red represent the common SNPs in both FPR3757 and TCH1516 as compared to UAS391 (also in TableÂ 2). (XLSX 14 kb)