cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.18154/rwth-2023-08808
title: High-resolution digital elevation model (DEM) of the Urft River valley (Urft Reservoir) from 1897, northern Eifel Mountains, western Germany

description: doi:10.18154/RWTH-2023-08808
description: Affiliated publication: Stauch, G., Dörwald, L., Esch, A., Walk, J., 2023. 115 years of sediment deposition in a reservoir in central Europe: Topographic change detection. Earth Surface Processes and Landforms.
DOI: 10.6084/m9.figshare.24559516
title: event_2_compiled_data_V20200911_1.nc

description: This file contains all observations performed during the ASM campaign between 05 and 07 August, 2018.
DOI: 10.6084/m9.figshare.24559516.v1
title: event_2_compiled_data_V20200911_1.nc

description: This file contains all observations performed during the ASM campaign between 05 and 07 August, 2018.
DOI: 10.6084/m9.figshare.24297544
title: Chromosome-scale genome assembly of sweet tea (<i>Lithocarpus polystachyus </i>Rehder)

description: The genome assembly and annotation data of <i>Lithocarpus polystachyus</i>.
DOI: 10.6084/m9.figshare.24297544.v3
title: Chromosome-scale genome assembly of sweet tea (<i>Lithocarpus polystachyus </i>Rehder)

description: The genome assembly and annotation data of <i>Lithocarpus polystachyus</i>.
DOI: 10.6084/m9.figshare.22581982.v3
title: <b>Behavioral interactions are modulated by facilitation along a heterotrophic succession</b>

description: Raw data for the manuscript "Behavioral interactions are modulated by facilitation along a heterotrophic succession", published in Ecology (2023).
DOI: 10.5517/ccdc.csd.cc1pc8r2
title: CCDC 1559974: Experimental Crystal Structure Determination

description: Related Article: G. Samuthra, N. Prabavathi|2020|Intl. J. Creative Res. Thoughts|8|942|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2146l0
title: CCDC 1880881: Experimental Crystal Structure Determination

description: Related Article: Muhammad Iqbal, Amir Karim, Saeed Ullah, Saqib Ali, Muhammad Nawaz Tahir|2023|Polyhedron|246|116698|doi:10.1016/j.poly.2023.116698
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2146p3
title: CCDC 1880884: Experimental Crystal Structure Determination

description: Related Article: Muhammad Iqbal, Amir Karim, Saeed Ullah, Saqib Ali, Muhammad Nawaz Tahir|2023|Polyhedron|246|116698|doi:10.1016/j.poly.2023.116698
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24y1nt
title: CCDC 1994126: Experimental Crystal Structure Determination

description: Related Article: Yan Zhou, Fei Yu, Jian Su, Mohamedally Kurmoo, Jing-Lin Zuo|2020|Angew.Chem.,Int.Ed.|59|18763|doi:10.1002/anie.202008941
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24y1pv
title: CCDC 1994127: Experimental Crystal Structure Determination

description: Related Article: Yan Zhou, Fei Yu, Jian Su, Mohamedally Kurmoo, Jing-Lin Zuo|2020|Angew.Chem.,Int.Ed.|59|18763|doi:10.1002/anie.202008941
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc286h11
title: CCDC 2091602: Experimental Crystal Structure Determination

description: Related Article: Aysha Fatima, Ghazala Khanum, Nazia Siddiqui, S. Muthu, Mohd Afzal, R.J. Butcher, Sanjay Kumar Srivastava, Saleem Javed|2023|Chem.Phys.Imp|7|100345|doi:10.1016/j.chphi.2023.100345
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/6965563
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.6073/pasta/a6c23c675f5d4eac4534c3e5909bc6d7
title: Water transparency in the Laurentian Great Lakes

description: The Laurentian Great Lakes in the mid-east region of North America, is one of the largest freshwater ecosystems in the world. This data set contains limnological data, focusing on underwater transparency in this ecosystem and the surrounding region, beginning in 1999. Current water transparency data sets highlight the increase in offshore transparency measured by a deepening of average Secchi Disk depth since the invasion of the Dreissenid mussels. However, limited data exists on the Great Lakes to provide insight to the underwater optical environment of the offshore, nearshore, and surrounding water bodies of these lakes. These data illustrate the vertical underwater light environment with data from wavelengths of sunlight including photosynthetically active radiation (400 – 700 nm), UV-A radiation (320 - 400 nm) and UV-B radiation (290 - 320 nm). Understanding the depths to which these specific wavelengths of sunlight reach within a lake, as well as the substances within the lake that may influence the attenuation of sunlight can provide a picture of how habitats within the lake system have been impacted. This data set is a part of a continuous data collaboration among multiple research groups, and will be updated periodically as more data are made available. As such, this initial data set provides a snapshot of water transparency in the Great Lakes, and more sampling sites and years of data are forthcoming. The data here are contained in five files, including Data_GreatLakes.csv, SiteInformation_GreatLakes.csv, Methods_GreatLakes.csv, Project_GreatLakes, and Variables_GreatLakes. The main data are in Data_GreatLakes.csv. SiteInformation_GreatLakes.csv, Methods_GreatLakes.csv, Project_GreatLakes.csv, and Variables_GreatLakes.csv support the main data file with descriptions of the sampling sites, methods by which samples were processed, project and contact information for each data point, and descriptions of variables, respectively.
DOI: 10.25934/pr00003586.1
title: Available IPD datapackage for study 'A Multicenter, Open Label, Phase I /Randomised Phase II Study to Evaluate Safety, Pharmacokinetics and Efficacy of BIBF 1120 in Comparison With Oral Sorafenib for Advanced Hepatocellular Carcinoma Patients.'

description: The study aim is to determine maximally tolerated dose (MTD) of BIBF 1120 in HCC (hepatocellular cancer) and compare efficacy of BIBF 1120 to Sorafenib in HCC patients
DOI: 10.5519/qd.spm5bhrl
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2037 records)
DOI: 10.5519/qd.01orvt4q
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (777 records)
DOI: 10.5519/qd.t7ysbosd
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1835 records)
DOI: 10.6084/m9.figshare.23551023
title: Supplementary Table 1. Metadata of RNA-seq data.

description: This data sheet describes the metadata of RNA-seq data collected from the public database (SRA).
DOI: 10.6084/m9.figshare.23551023.v1
title: Supplementary Table 1. Metadata of RNA-seq data.

description: This data sheet describes the metadata of RNA-seq data collected from the public database (SRA).
DOI: 10.5519/qd.n5kye3n7
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (933 records)
DOI: 10.21338/cron2w6_pt_e01
title: CRONOS2 Wave 6 PT edition 1.0
DOI: 10.5519/qd.is0gzi7u
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (777 records)
DOI: 10.21338/cron2w6_si_e01
title: CRONOS2 Wave 6 SI edition 1.0
DOI: 10.21338/cron2w6_se_e01
title: CRONOS2 Wave 6 SE edition 1.0
DOI: 10.5281/zenodo.8382288
title: Data for "Statistical characteristics of thunderstorm activity in the middle reaches of the Yangtze River Basin based on a five-year cloud-to-ground lighting dataset"

description: Data for "Statistical characteristics of thunderstorm activity in the middle reaches of the Yangtze River Basin based on a five-year"
DOI: 10.21338/cron2w6_gb_e01
title: CRONOS2 Wave 6 GB edition 1.0
DOI: 10.5281/zenodo.10082305
title: ACCESS-AM2 daily and hourly cloud and radiation data for model evaluation at Macquarie Island

description: The ACCESS-AM2 (Australian Community Climate and Earth-System Simulator - Atmospheric Model Version 2) daily and hourly data used for the study described in Pei et al. (2023), accepted in Atmospheric Chemistry and Physics (ACP), 'Assessing the cloud radiative bias at Macquarie Island in the ACCESS-AM2 model' . 
Included files: 

ACCESS_AM2_daily.zip  - daily model outputs from 2016-04 to 2018-03
ACCESS_AM2_hourly.zip  -  hourly model outputs from 2017-09 to 2018-02
The code that performs the analysis/generates this data can be found here: https://github.com/ZhangchengPei/codes-for-MI-paper
description: This project received grant funding from the Australian Government as part of the Antarctic Science Collaboration Initiative program, under the Australian Antarctic Program Partnership, ASCI000002. This research was undertaken with the assistance of resources and services from the National Computational Infrastructure (projects jk72, hh5, and rt52), which is supported by the Australian Government.
DOI: 10.5281/zenodo.10082306
title: ACCESS-AM2 daily and hourly cloud and radiation data for model evaluation at Macquarie Island

description: The ACCESS-AM2 (Australian Community Climate and Earth-System Simulator - Atmospheric Model Version 2) daily and hourly data used for the study described in Pei et al. (2023), accepted in Atmospheric Chemistry and Physics (ACP), 'Assessing the cloud radiative bias at Macquarie Island in the ACCESS-AM2 model' . 
Included files: 

ACCESS_AM2_daily.zip  - daily model outputs from 2016-04 to 2018-03
ACCESS_AM2_hourly.zip  -  hourly model outputs from 2017-09 to 2018-02
The code that performs the analysis/generates this data can be found here: https://github.com/ZhangchengPei/codes-for-MI-paper
description: This project received grant funding from the Australian Government as part of the Antarctic Science Collaboration Initiative program, under the Australian Antarctic Program Partnership, ASCI000002. This research was undertaken with the assistance of resources and services from the National Computational Infrastructure (projects jk72, hh5, and rt52), which is supported by the Australian Government.
DOI: 10.6084/m9.figshare.24552955
title: tCRE atlas supplementary tables

description: Supplementary Tables for the manuscript: A single-cell atlas of transcribed cis-regulatory elements in the human genome
DOI: 10.6084/m9.figshare.24552955.v2
title: tCRE atlas supplementary tables

description: Supplementary Tables for the manuscript: A single-cell atlas of transcribed cis-regulatory elements in the human genome
DOI: 10.6084/m9.figshare.24550732.v1
title: case_10.rar

description: This is a sample
DOI: 10.34740/kaggle/dsv/6965865
title: 2021 World Population (updated daily)
DOI: 10.5281/zenodo.10124294
title: Data for: The influence of microbially induced calcite precipitation on subsurface transport processes in cement at the pore scale

description: This is the dataset for the paper "The influence of microbially induced calcite precipitation on subsurface transport processes in cement at the pore scale" in AWR.
DOI: 10.5281/zenodo.10124293
title: Data for: The influence of microbially induced calcite precipitation on subsurface transport processes in cement at the pore scale

description: This is the dataset for the paper "The influence of microbially induced calcite precipitation on subsurface transport processes in cement at the pore scale" in AWR.
DOI: 10.5281/zenodo.10074122
title: Single-cell RNA-seq data of sorted bone marrow CD19+B220+ B cells  from Cyldflx/flx mice and Mb1Cre-Cyldflx/flx mouse models

description: CYLD, a protein encoded by the Cyld gene, is a deubiquitinase involved in signalling events rather than proteasomal degradation. Mutations in CYLD are associated with familial cylindromatosis, leading to benign skin tumours. CYLD downregulates various solid and haematological tumours by negatively regulating signalling pathways like NF-κB, Wnt/β-catenin, and Notch. The most common Cyld splice variant encodes a 956 amino acid polypeptide with a catalytic domain at the carboxy-terminal, CAP-Gly domains at the N-terminal, and other domains in the central region. It interacts with various proteins, including tubulin, microtubules, and NEMO. CYLD is implicated in diverse functions such as cell proliferation, apoptosis, inflammation, spermatogenesis, and immune responses. Its role in B cell lymphopoiesis is less clear, with some studies showing increased B cell activation in Cyld-/- mice, while others suggest minimal impact on B cell maturation. To clarify CYLD's role in B cell lymphopoiesis, transgenic animals with B cell-specific catalytic inactivation of CYLD were created, revealing that CYLD plays a significant role in B cell maturation and function, with its disruption severely impeding B cell responses. Mb1Cre-Cyldflx/flx mice were generated by crossing a neo- derivative (Cyldfl9/fl9 neo-) of the previously developed Cyldfl9/fl9 mice25 with Mb1Cre mice33 (provided by Prof. M. Reth)34. In Cyldfl9/fl9 mice, loxP sites flank the 9th exon and when recombination occurs in the presence of Cre recombinase, the ensuing exons, including the gene region encoding for the catalytic domain, are out of frame and not expressed. All mice were maintained under specific pathogen-free (SPF) conditions at the animal laboratory facility of the IRCCS Ospedale San Raffaele, Milan, Italy. Mice of experimental groups were age-matched (3 and 6 months), of both genders and, in most cases, littermates. All animal experiments were approved by the Animal Ethics Committee of the IRCCS Ospedale San Raffaele for compliance to European regulations and licensed by the National Veterinary Administration authorities of Italy. 
For single-cell RNA sequencing, sorted bone marrow CD19+B220+ B cells were collected in RPMI medium (Euroclone, ECB2000) supplemented with 10% FBS (Euroclone, ECS0180L). Cell viability was then determined using Trypan Blue exclusion (Sigma-Aldrich, T8154-EA) and TC20 Automated Cell Counter (Bio-rad). 4000 cells were encapsulated using the Chromium Controller platform (10X Genomics) and libraries were prepared using the Chromium Next GEM Single Cell 3' Kit v3.1 (10X Genomics). Final libraries were sequenced according to the manufacturer's instructions on Novaseq6000. 
The pertinent code can be found here: https://github.com/BiodataAnalysisGroup/Cyld-regulation-of-bcell-maturation
DOI: 10.5281/zenodo.10074123
title: Single-cell RNA-seq data of sorted bone marrow CD19+B220+ B cells  from Cyldflx/flx mice and Mb1Cre-Cyldflx/flx mouse models

description: CYLD, a protein encoded by the Cyld gene, is a deubiquitinase involved in signalling events rather than proteasomal degradation. Mutations in CYLD are associated with familial cylindromatosis, leading to benign skin tumours. CYLD downregulates various solid and haematological tumours by negatively regulating signalling pathways like NF-κB, Wnt/β-catenin, and Notch. The most common Cyld splice variant encodes a 956 amino acid polypeptide with a catalytic domain at the carboxy-terminal, CAP-Gly domains at the N-terminal, and other domains in the central region. It interacts with various proteins, including tubulin, microtubules, and NEMO. CYLD is implicated in diverse functions such as cell proliferation, apoptosis, inflammation, spermatogenesis, and immune responses. Its role in B cell lymphopoiesis is less clear, with some studies showing increased B cell activation in Cyld-/- mice, while others suggest minimal impact on B cell maturation. To clarify CYLD's role in B cell lymphopoiesis, transgenic animals with B cell-specific catalytic inactivation of CYLD were created, revealing that CYLD plays a significant role in B cell maturation and function, with its disruption severely impeding B cell responses. Mb1Cre-Cyldflx/flx mice were generated by crossing a neo- derivative (Cyldfl9/fl9 neo-) of the previously developed Cyldfl9/fl9 mice25 with Mb1Cre mice33 (provided by Prof. M. Reth)34. In Cyldfl9/fl9 mice, loxP sites flank the 9th exon and when recombination occurs in the presence of Cre recombinase, the ensuing exons, including the gene region encoding for the catalytic domain, are out of frame and not expressed. All mice were maintained under specific pathogen-free (SPF) conditions at the animal laboratory facility of the IRCCS Ospedale San Raffaele, Milan, Italy. Mice of experimental groups were age-matched (3 and 6 months), of both genders and, in most cases, littermates. All animal experiments were approved by the Animal Ethics Committee of the IRCCS Ospedale San Raffaele for compliance to European regulations and licensed by the National Veterinary Administration authorities of Italy. 
For single-cell RNA sequencing, sorted bone marrow CD19+B220+ B cells were collected in RPMI medium (Euroclone, ECB2000) supplemented with 10% FBS (Euroclone, ECS0180L). Cell viability was then determined using Trypan Blue exclusion (Sigma-Aldrich, T8154-EA) and TC20 Automated Cell Counter (Bio-rad). 4000 cells were encapsulated using the Chromium Controller platform (10X Genomics) and libraries were prepared using the Chromium Next GEM Single Cell 3' Kit v3.1 (10X Genomics). Final libraries were sequenced according to the manufacturer's instructions on Novaseq6000.
DOI: 10.5281/zenodo.10124303
title: Single-cell RNA-seq data of sorted bone marrow CD19+B220+ B cells  from Cyldflx/flx mice and Mb1Cre-Cyldflx/flx mouse models

description: CYLD, a protein encoded by the Cyld gene, is a deubiquitinase involved in signalling events rather than proteasomal degradation. Mutations in CYLD are associated with familial cylindromatosis, leading to benign skin tumours. CYLD downregulates various solid and haematological tumours by negatively regulating signalling pathways like NF-κB, Wnt/β-catenin, and Notch. The most common Cyld splice variant encodes a 956 amino acid polypeptide with a catalytic domain at the carboxy-terminal, CAP-Gly domains at the N-terminal, and other domains in the central region. It interacts with various proteins, including tubulin, microtubules, and NEMO. CYLD is implicated in diverse functions such as cell proliferation, apoptosis, inflammation, spermatogenesis, and immune responses. Its role in B cell lymphopoiesis is less clear, with some studies showing increased B cell activation in Cyld-/- mice, while others suggest minimal impact on B cell maturation. To clarify CYLD's role in B cell lymphopoiesis, transgenic animals with B cell-specific catalytic inactivation of CYLD were created, revealing that CYLD plays a significant role in B cell maturation and function, with its disruption severely impeding B cell responses. Mb1Cre-Cyldflx/flx mice were generated by crossing a neo- derivative (Cyldfl9/fl9 neo-) of the previously developed Cyldfl9/fl9 mice25 with Mb1Cre mice33 (provided by Prof. M. Reth)34. In Cyldfl9/fl9 mice, loxP sites flank the 9th exon and when recombination occurs in the presence of Cre recombinase, the ensuing exons, including the gene region encoding for the catalytic domain, are out of frame and not expressed. All mice were maintained under specific pathogen-free (SPF) conditions at the animal laboratory facility of the IRCCS Ospedale San Raffaele, Milan, Italy. Mice of experimental groups were age-matched (3 and 6 months), of both genders and, in most cases, littermates. All animal experiments were approved by the Animal Ethics Committee of the IRCCS Ospedale San Raffaele for compliance to European regulations and licensed by the National Veterinary Administration authorities of Italy. 
For single-cell RNA sequencing, sorted bone marrow CD19+B220+ B cells were collected in RPMI medium (Euroclone, ECB2000) supplemented with 10% FBS (Euroclone, ECS0180L). Cell viability was then determined using Trypan Blue exclusion (Sigma-Aldrich, T8154-EA) and TC20 Automated Cell Counter (Bio-rad). 4000 cells were encapsulated using the Chromium Controller platform (10X Genomics) and libraries were prepared using the Chromium Next GEM Single Cell 3' Kit v3.1 (10X Genomics). Final libraries were sequenced according to the manufacturer's instructions on Novaseq6000. 
The pertinent code can be found here: https://github.com/BiodataAnalysisGroup/Cyld-regulation-of-bcell-maturation
DOI: 10.5281/zenodo.7825350
title: MALDI-ToF-MS spectra of Late Pleistocene fossil material from Australia for ZooMS

description: MALDI-TOF-MS spectra for Late Pleistocene fossil material from Australia. All spectra are uploaded in .mzml format.
DOI: 10.5281/zenodo.7825351
title: MALDI-ToF-MS spectra of Late Pleistocene fossil material from Australia for ZooMS

description: MALDI-TOF-MS spectra for Late Pleistocene fossil material from Australia. All spectra are uploaded in .mzml format.