cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.vjffvb
title: Occurrence Download

description: A dataset listing the 88 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (Japan, China, Korea, Republic of)",
 "OccurrenceStatus is Present",
 "TaxonKey is Scrophularia L."
 ]
}

 The dataset's 88 records were derived from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076378-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6vnjb
title: Occurrence Download

description: A dataset containing 148 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygala edmundii Chodat"
 ]
}

 The dataset includes 148 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076394-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.myqaj4
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plocama puberula (Balf.f.) M.Backlund & Thulin"
 ]
}

 The dataset includes 15 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076395-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cs9pf5
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plocama putorioides (Radcl.-Sm.) M.Backlund & Thulin"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076396-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.smdhdk
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygala effusa Paiva & Thulin"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076397-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dcwx4w
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plantago malato-belizii Lawalrée"
 ]
}

 The dataset includes 43 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076398-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10901781
title: Final point cloud results of DAR-MVSNet on DTU dataset

description: DAR-MVSNet在DTU数据集上的最终点云结果。
DOI: 10.5281/zenodo.10901782
title: Final point cloud results of DAR-MVSNet on DTU dataset

description: DAR-MVSNet在DTU数据集上的最终点云结果。
DOI: 10.6084/m9.figshare.25496848
title: <b>Temperature dominated deformation of the Xieliupo landslide+Dataset</b>

description: Descriptions of the data used in this work We uploaded one folder, an excel file and a tiff file. The folder contains 143 Sentinel-2 images from November 27, 2015 to March 5, 2023. The excel file contains daily surface temperature from November 27, 2015 to February 28, 2023 and monthly precipitation data from November 15, 2015 to February 15, 2023. The tiff data is the cumulative deformation result of Xieliupo inverted from Sentinel-2 images.<br><br>
DOI: 10.6084/m9.figshare.25496848.v4
title: Temperature dominated deformation of the Xieliupo landslide+Dataset

description: Research paper dataThe Sentinel-2 data is from November 27, 2015 to March 5, 2023, with a total of 143 scenes, used to invert the cumulative deformation of Xieliupo.This excel table contains monthly rainfall and daily surface temperature data. The rainfall data is from November 15, 2015 to February 15, 2023, and the temperature data is from November 27, 2015 to February 28, 2023. These data were used to produce Figure 3 in the paper.The 44RLU_cum3 is the cumulative deformation result of Xieliupo inverted by Sentinel-2.<br><br>
DOI: 10.6084/m9.figshare.25496848.v5
title: <b>Temperature dominated deformation of the Xieliupo landslide+Dataset</b>

description: Descriptions of the data used in this work We uploaded one folder, an excel file and a tiff file. The folder contains 143 Sentinel-2 images from November 27, 2015 to March 5, 2023. The excel file contains daily surface temperature from November 27, 2015 to February 28, 2023 and monthly precipitation data from November 15, 2015 to February 15, 2023. The tiff data is the cumulative deformation result of Xieliupo inverted from Sentinel-2 images.<br><br>
DOI: 10.15468/dl.tzjs7m
title: Occurrence Download

description: A dataset containing 224 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plocama reboudiana (Coss. & Durieu) M.Backlund & Thulin"
 ]
}

 The dataset includes 224 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076399-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.38mt6u
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygala ehlersii Gürke"
 ]
}

 The dataset includes 30 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076400-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7dcu2u
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plantago maris-mortui Eig"
 ]
}

 The dataset includes 16 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076401-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8kfpkv
title: Occurrence Download

description: A dataset containing 769551089 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "Year 2020-2023"
 ]
}

 The dataset includes 769551089 records from 19521 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076341-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.5938453
title: The genome-wide transcription response underlying the dorsal processes and dorsal setae of the body in <i>Dasyaphis mirabilis</i> (Aphididae: Calaphidinae)

description: <i>Dasyaphis mirabilis</i> is capable of producing short or long dorsal processes and dorsal setae in nature. However, the molecular genetic mechanisms underlying the induction of the short or long dorsal processes and dorsal setae in some species remain unknown. Therefore, we performed a comparative analysis of transcriptional profiling among the short and long morphs and revealed that the expression of some co-activators, such as <i>β</i>-<i>catenin</i>, <i>Runx1</i>, <i>Runx3</i>, <i>Hes1</i>, <i>Delta</i>-<i>like 1</i>, <i>Hairless</i>, <i>Smad4</i>, <i>Comp</i>, <i>Egfr</i>, <i>Fgfr2</i>, <i>Bmp2</i>, <i>Noggin</i>, <i>Iftl72</i>, <i>Msx2</i>, and <i>Med1</i>, and co-repressed genes, such as <i>Groucho</i>, are consistent with changes in the expression of Wnt, Notch, Hh, TGF-β, MAPK and JAK-STAT signalling pathways in the dorsal processes and dorsal setae development. Moreover, our results also provide a model to explain the molecular adaptive mechanisms that environmental changes effect on the aphids, and lead to dorsal processes and dorsal setae development in <i>D. mirabilis</i>, and add a unique and significant insight into the molecular genetic mechanisms underlying the dorsal processes and dorsal setae in aphids.
DOI: 10.6084/m9.figshare.5938453.v1
title: The genome-wide transcription response underlying the dorsal processes and dorsal setae of the body in <i>Dasyaphis mirabilis</i> (Aphididae: Calaphidinae)

description: <i>Dasyaphis mirabilis</i> is capable of producing short or long dorsal processes and dorsal setae in nature. However, the molecular genetic mechanisms underlying the induction of the short or long dorsal processes and dorsal setae in some species remain unknown. Therefore, we performed a comparative analysis of transcriptional profiling among the short and long morphs and revealed that the expression of some co-activators, such as <i>β</i>-<i>catenin</i>, <i>Runx1</i>, <i>Runx3</i>, <i>Hes1</i>, <i>Delta</i>-<i>like 1</i>, <i>Hairless</i>, <i>Smad4</i>, <i>Comp</i>, <i>Egfr</i>, <i>Fgfr2</i>, <i>Bmp2</i>, <i>Noggin</i>, <i>Iftl72</i>, <i>Msx2</i>, and <i>Med1</i>, and co-repressed genes, such as <i>Groucho</i>, are consistent with changes in the expression of Wnt, Notch, Hh, TGF-β, MAPK and JAK-STAT signalling pathways in the dorsal processes and dorsal setae development. Moreover, our results also provide a model to explain the molecular adaptive mechanisms that environmental changes effect on the aphids, and lead to dorsal processes and dorsal setae development in <i>D. mirabilis</i>, and add a unique and significant insight into the molecular genetic mechanisms underlying the dorsal processes and dorsal setae in aphids.
DOI: 10.25582/data.2024-01.3003442/2297329
title: Data for EMSL Project 60920 from January 2024
DOI: 10.6084/m9.figshare.23239957
title: Additional file 1 of Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities

description: Additional file 1: Table S1. Metadata of the collected samples and metagenomes. Table S2. Sequence data of the obtained viral genomes and genome fragments. Table S3. Functional and taxonomic annotation of the CDS encoded in the viral genomes and genome fragments. Table S4. Relative abundances of viral viral genomes and genome fragments across 58 metagenomes calculated as RPKM. Table S5. Relative abundances of viral KEGG KOs across 58 metagenomes calculated based on RPKM of individual viral viral genomes and genome fragments. Table S6. Relative abundances of viral KEGG pathways across 58 metagenomes calculated based on RPKM of individualviral genomes and genome fragments. Table S7. Relative abundances of viral KEGG metabolism across 58 metagenomes calculated based on RPKM of individual viral genomes and genome fragments. Table S8. Relative abundances of viruses grouped according to family level taxonomic affiliation based on RPKM of individual viral genomes and genome fragments. Table S9. Relative abundances of viruses grouped according to predicted host phylum (or class for Proteobacteria) taxonomic affiliation based on RPKM of individual viral scaffolds. Table S10. Results of Mann-Whitney tests used to compare the relative abundances of: viruses grouped according to predicted host phylum (or class for Proteobacteria), family level taxonomic affiliation, viral KEGG pathways, and viral KEGG metabolisms. Table S11. Results of Pearson and Spearman correlation analyses used to quantify the degrees of association between environmental parameters and the relative abundances of: viruses grouped according to predicted host phylum (or class for Proteobacteria), family level taxonomic affiliation, viral KEGG pathways, and viral KEGG metabolisms.
DOI: 10.6084/m9.figshare.13278350.v1
title: Additional file 4 of Chicken cecal DNA methylome alteration in the response to Salmonella enterica serovar Enteritidis inoculation

description: Additional file 4: Supplementary Table S4.The differentially methylated genes in two pathways.
DOI: 10.6084/m9.figshare.23239957.v1
title: Additional file 1 of Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities

description: Additional file 1: Table S1. Metadata of the collected samples and metagenomes. Table S2. Sequence data of the obtained viral genomes and genome fragments. Table S3. Functional and taxonomic annotation of the CDS encoded in the viral genomes and genome fragments. Table S4. Relative abundances of viral viral genomes and genome fragments across 58 metagenomes calculated as RPKM. Table S5. Relative abundances of viral KEGG KOs across 58 metagenomes calculated based on RPKM of individual viral viral genomes and genome fragments. Table S6. Relative abundances of viral KEGG pathways across 58 metagenomes calculated based on RPKM of individualviral genomes and genome fragments. Table S7. Relative abundances of viral KEGG metabolism across 58 metagenomes calculated based on RPKM of individual viral genomes and genome fragments. Table S8. Relative abundances of viruses grouped according to family level taxonomic affiliation based on RPKM of individual viral genomes and genome fragments. Table S9. Relative abundances of viruses grouped according to predicted host phylum (or class for Proteobacteria) taxonomic affiliation based on RPKM of individual viral scaffolds. Table S10. Results of Mann-Whitney tests used to compare the relative abundances of: viruses grouped according to predicted host phylum (or class for Proteobacteria), family level taxonomic affiliation, viral KEGG pathways, and viral KEGG metabolisms. Table S11. Results of Pearson and Spearman correlation analyses used to quantify the degrees of association between environmental parameters and the relative abundances of: viruses grouped according to predicted host phylum (or class for Proteobacteria), family level taxonomic affiliation, viral KEGG pathways, and viral KEGG metabolisms.
DOI: 10.25582/data.2024-01.3002999/2297330
title: Data for EMSL Project 60920 from January 2024
DOI: 10.6084/m9.figshare.13278341
title: Additional file 1 of Chicken cecal DNA methylome alteration in the response to Salmonella enterica serovar Enteritidis inoculation

description: Additional file 1: Supplementary Table S1. The top 30 Genes with high DMC density.
DOI: 10.6084/m9.figshare.13278485
title: Additional file 8 of gCAnno: a graph-based single cell type annotation method

description: Additional file 8: Table S3. The tSNE result, cell barcodes and cell type labels of (a) mCel-seq2 liver, (b) 10x liver, (c) Drop-seq pancreas and (d) Smart-seq2 pancreas.
DOI: 10.6084/m9.figshare.22191384
title: A General M-estimation Theory in Semi-Supervised Framework

description: We study a class of general M-estimators in the semi-supervised setting, wherein the data are typically a combination of a relatively small labeled dataset and large amounts of unlabeled data. A new estimator, which efficiently uses the useful information contained in the unlabeled data, is proposed via a projection technique. We prove consistency and asymptotic normality, and provide an inference procedure based on K-fold cross-validation. The optimal weights are derived to balance the contributions of the labeled and unlabeled data. It is shown that the proposed method, by taking advantage of the unlabeled data, produces asymptotically more efficient estimation of the target parameters than the supervised counterpart. Supportive numerical evidence is shown in simulation studies. Applications are illustrated in analysis of the homeless data in Los Angeles. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.13278485.v1
title: Additional file 8 of gCAnno: a graph-based single cell type annotation method

description: Additional file 8: Table S3. The tSNE result, cell barcodes and cell type labels of (a) mCel-seq2 liver, (b) 10x liver, (c) Drop-seq pancreas and (d) Smart-seq2 pancreas.
DOI: 10.6084/m9.figshare.22191384.v1
title: A General M-estimation Theory in Semi-Supervised Framework

description: We study a class of general M-estimators in the semi-supervised setting, wherein the data are typically a combination of a relatively small labeled dataset and large amounts of unlabeled data. A new estimator, which efficiently uses the useful information contained in the unlabeled data, is proposed via a projection technique. We prove consistency and asymptotic normality, and provide an inference procedure based on K-fold cross-validation. The optimal weights are derived to balance the contributions of the labeled and unlabeled data. It is shown that the proposed method, by taking advantage of the unlabeled data, produces asymptotically more efficient estimation of the target parameters than the supervised counterpart. Supportive numerical evidence is shown in simulation studies. Applications are illustrated in analysis of the homeless data in Los Angeles. Supplementary materials for this article are available online.
DOI: 10.25582/data.2024-01.3003032/2297331
title: Data for EMSL Project 60920 from January 2024
DOI: 10.6084/m9.figshare.13278344
title: Additional file 2 of Chicken cecal DNA methylome alteration in the response to Salmonella enterica serovar Enteritidis inoculation

description: Additional file 2: Supplementary Table S2. The DMC density of the HOX genes.
DOI: 10.6084/m9.figshare.13278431.v1
title: Additional file 12 of gCAnno: a graph-based single cell type annotation method

description: Additional file 12: Table S4. The statistic of select state of reported marker genes from the corresponding publications in four datasets with selected genes.
DOI: 10.6084/m9.figshare.13278347
title: Additional file 3 of Chicken cecal DNA methylome alteration in the response to Salmonella enterica serovar Enteritidis inoculation

description: Additional file 3: Supplementary Table S3. The differentially methylated genes in each GO terms.
DOI: 10.25582/data.2024-01.3002996/2297332
title: Data for EMSL Project 60920 from January 2024
DOI: 10.6084/m9.figshare.13278341.v1
title: Additional file 1 of Chicken cecal DNA methylome alteration in the response to Salmonella enterica serovar Enteritidis inoculation

description: Additional file 1: Supplementary Table S1. The top 30 Genes with high DMC density.
DOI: 10.6084/m9.figshare.13278344.v1
title: Additional file 2 of Chicken cecal DNA methylome alteration in the response to Salmonella enterica serovar Enteritidis inoculation

description: Additional file 2: Supplementary Table S2. The DMC density of the HOX genes.
DOI: 10.6084/m9.figshare.13278431
title: Additional file 12 of gCAnno: a graph-based single cell type annotation method

description: Additional file 12: Table S4. The statistic of select state of reported marker genes from the corresponding publications in four datasets with selected genes.
DOI: 10.6084/m9.figshare.6987038
title: Extending ggplot2 for Linked and Animated Web Graphics

description: Interactive web graphics are great for communication and knowledge sharing, but are difficult to leverage during the exploratory phase of a data science workflow. Even before the web, interactive graphics helped data analysts quickly gather insight from data, discover the unexpected, and develop better model diagnostics. Although web technologies make interactive graphics more accessible, they are not designed to fit inside an exploratory data analysis (EDA) workflow where rapid iteration between data manipulation, modeling, and visualization must occur. To better facilitate exploratory web graphics that are easily distributed, we need better interfaces between statistical computing environments (e.g., the R language) and client-side web technologies. We propose the R package animint for rapid creation of linked and animated web graphics through a simple extension of ggplot2’s implementation of the Grammar of Graphics. The extension allows one to write ggplot2 code and produce a standalone web page with multiple linked views. Supplementary material for this article is available online.
DOI: 10.25582/data.2024-01.3003948/2297333
title: Data for EMSL Project 60920 from January 2024
DOI: 10.6084/m9.figshare.6987038.v1
title: Extending ggplot2 for linked and animated web graphics

description: Interactive web graphics are great for communication and knowledge sharing, but are difficult to leverage during the exploratory phase of a data science workflow. Even before the web, interactive graphics helped data analysts quickly gather insight from data, discover the unexpected, and develop better model diagnostics. Although web technologies make interactive graphics more accessible, they are not designed to fit inside an exploratory data analysis (EDA) workflow where rapid iteration between data manipulation, modeling, and visualization must occur. To better facilitate exploratory web graphics that are easily distributed, we need better interfaces between statistical computing environments (e.g. the R language) and client-side web technologies. We propose the R package <b>animint</b> for rapid creation of linked and animated web graphics through a simple extension of <b>ggplot2</b>’s implementation of the Grammar of Graphics. The extension allows one to write <b>ggplot2</b> code and produce a standalone web page with multiple linked views.
DOI: 10.6084/m9.figshare.6987038.v2
title: Extending ggplot2 for Linked and Animated Web Graphics

description: Interactive web graphics are great for communication and knowledge sharing, but are difficult to leverage during the exploratory phase of a data science workflow. Even before the web, interactive graphics helped data analysts quickly gather insight from data, discover the unexpected, and develop better model diagnostics. Although web technologies make interactive graphics more accessible, they are not designed to fit inside an exploratory data analysis (EDA) workflow where rapid iteration between data manipulation, modeling, and visualization must occur. To better facilitate exploratory web graphics that are easily distributed, we need better interfaces between statistical computing environments (e.g., the R language) and client-side web technologies. We propose the R package animint for rapid creation of linked and animated web graphics through a simple extension of ggplot2’s implementation of the Grammar of Graphics. The extension allows one to write ggplot2 code and produce a standalone web page with multiple linked views. Supplementary material for this article is available online.
DOI: 10.6084/m9.figshare.6987038.v3
title: Extending ggplot2 for Linked and Animated Web Graphics

description: Interactive web graphics are great for communication and knowledge sharing, but are difficult to leverage during the exploratory phase of a data science workflow. Even before the web, interactive graphics helped data analysts quickly gather insight from data, discover the unexpected, and develop better model diagnostics. Although web technologies make interactive graphics more accessible, they are not designed to fit inside an exploratory data analysis (EDA) workflow where rapid iteration between data manipulation, modeling, and visualization must occur. To better facilitate exploratory web graphics that are easily distributed, we need better interfaces between statistical computing environments (e.g., the R language) and client-side web technologies. We propose the R package animint for rapid creation of linked and animated web graphics through a simple extension of ggplot2’s implementation of the Grammar of Graphics. The extension allows one to write ggplot2 code and produce a standalone web page with multiple linked views. Supplementary material for this article is available online.
DOI: 10.25582/data.2023-02.2736479/2297334
title: Data for EMSL Project 51398 from February 2023