cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.r7d5fr
title: Occurrence Download

description: A dataset containing 242 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bulbophyllum weddellii (Lindl.) Rchb.f."
 ]
}

 The dataset includes 242 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0147429-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gtdkev
title: Occurrence Download

description: A dataset containing 73245 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Andromeda polifolia L.",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 73245 records from 189 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035749-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m49txr
title: Occurrence Download

description: A dataset containing 2182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tephrosia Pers.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 2182 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0171102-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x39vsw
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Pristimantis spilogaster (Lynch, 1984)"
 ]
}

 The dataset includes 37 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020003-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3c80qa
title: Occurrence Download

description: A dataset containing 14763 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mouriri Aubl."
 ]
}

 The dataset includes 14763 records from 210 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045549-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aax373
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidium paniculatum (Regel & Schmalh.) Al-Shehbaz"
 ]
}

 The dataset includes 25 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040887-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kbpbkc
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Colombia",
 "Year 2001-2007",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "TaxonKey is Macroagelaius subalaris (Boissonneau, 1840)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 21 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035749-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u8xm3x
title: Occurrence Download

description: A dataset containing 315 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 14.7849275325108",
 "DecimalLongitude is less than 14.7879870856952",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 315 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020016-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jc9nbr
title: Occurrence Download

description: A dataset containing 10806 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cystostereum australe Nakasone, Cystostereum heteromorphum Hallenb., Cystostereum kenyense Hjortstam, Cystostereum murrayi (Berk. & M.A.Curtis) Pouzar, Cystostereum pini-canadense (Schwein.) Parmasto, 1968, Cystostereum saxitas (Burt) A.L.Welden, Cystostereum stratosum Hallenb., Crustomyces subabruptus (Bourdot & Galzin) Jülich, Cystidiodontia artocreas (Berk. & M.A.Curtis ex Cooke) Hjortstam, Cericium luteoincrustatum (Hjortstam & Ryvarden) Hjortstam, Crustomyces expallens (Bres.) Hjortstam, Cystidiodontia isabellina (Berk. & Broome) Hjortstam & Ryvarden, Cystidiodontia laminifera (Berk. & M.A.Curtis) Hjortstam, Parvobasidium cretatum (Bourdot & Galzin) Jülich, Parvobasidium lianicola (G.Cunn.) Stalpers, Parvodontia luteocystidia Hjortstam & Ryvarden, Parvodontia albocrustacea (Rick) Baltazar & Rajchenb., Cystostereum Pouzar, Parvobasidium bullatum K.H.Larss. & E.C.Martini)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10806 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0180621-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cvdj5n
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Colombia",
 "Year 2000-2006",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "TaxonKey is Margarornis stellatus P.L.Sclater & Salvin, 1873",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035751-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tm8cx6
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Dendrolagus stellarum Flannery & Seri, 1990"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063438-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nvvtnr
title: Occurrence Download

description: A dataset containing 1506 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron camtschaticum Pall."
 ]
}

 The dataset includes 1506 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0147430-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p2m89n
title: Occurrence Download

description: A dataset containing 97131 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alosa Linck, 1790"
 ]
}

 The dataset includes 97131 records from 193 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0180619-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive5900.20240916.9.1
title: Haloarcula hispanica Juez et al. 1986

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5901.20240510.9
title: Haloarcula sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5902.20240916.9.1
title: Haloarcula sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5903.20240916.9.1
title: Haloarcula vallismortis (González et al. 1979) Torreblanca et al. 1986

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5904.20240916.9.1
title: Haloarcula marismortui (ex Volcani 1940) Oren et al. 1990

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5905.20240510.9
title: Haloarcula japonica Takashina et al. 1991

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5906.20240510.9
title: Haloarcula argentinensis Ihara et al. 1997

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.6084/m9.figshare.24917119
title: CircFKBP3 absence alleviates oxygen glucose deprivation-induced function loss of human brain microvascular endothelial cells <i>in vitro</i> via governing the miR-766-3p/TRAF3 axis

description: Brain microvascular endothelial cell (BMEC) functions loss is a key event in the development of ischemic stroke, which may be affected by the dysregulation of circular RNAs (circRNAs). We aimed to unveil the role of circRNA FKBP Prolyl Isomerase 3 (circFKBP3) in cell models of ischemic stroke. Cell models of ischemic stroke were constructed in human BEMCs (HBMECs) with the treatment of oxygen glucose deprivation (OGD). Quantitative real-time PCR (qPCR) and western blotting were conducted for expression analysis of circFKBP3, miR-766-3p and TNF receptor associated factor 3 (TRAF3). CCK-8, transwell, wound healing, flow cytometry, tube formation and ELISA assays were implemented to monitor cell viability, migration, apoptosis, angiogenesis and inflammation production. The putative binding relationship between miR-766-3p and circFKBP3 or TRAF3 was validated by dual-luciferase, RIP and pull-down assays. CircFKBP3 expression was elevated in OGD-treated HBMECs. OGD suppressed HBMEC viability, migration, angiogenesis, and provoked cell apoptosis and inflammation production, while knockdown of circFKBP3 attenuated these effects. CircFKBP3 interacted with miR-766-3p, and circFKBP3 absence-repressed HBMEC function loss and inflammation were recovered by miR-766-3p inhibition. CircFKBP3 targeted miR-766-3p to regulate TRAF3 expression. MiR-766-3p enrichment-repressed HBMEC function loss and inflammation were recovered by TRAF3 overexpression. CircFKBP3 absence alleviated OGD-induced function loss and inflammatory responses of HBMECs <i>via</i> governing the miR-766-3p/TRAF3 axis. CircFKBP3 expression is elevated in OGD-treated HBMECs. OGD-induced HBMEC function loss and inflammation are alleviated by circFKBP3 absence. CircFKBP3 directly targets miR-766-3p to regulate TRAF3 expression.
DOI: 10.6084/m9.figshare.24917119.v1
title: CircFKBP3 absence alleviates oxygen glucose deprivation-induced function loss of human brain microvascular endothelial cells <i>in vitro</i> via governing the miR-766-3p/TRAF3 axis

description: Brain microvascular endothelial cell (BMEC) functions loss is a key event in the development of ischemic stroke, which may be affected by the dysregulation of circular RNAs (circRNAs). We aimed to unveil the role of circRNA FKBP Prolyl Isomerase 3 (circFKBP3) in cell models of ischemic stroke. Cell models of ischemic stroke were constructed in human BEMCs (HBMECs) with the treatment of oxygen glucose deprivation (OGD). Quantitative real-time PCR (qPCR) and western blotting were conducted for expression analysis of circFKBP3, miR-766-3p and TNF receptor associated factor 3 (TRAF3). CCK-8, transwell, wound healing, flow cytometry, tube formation and ELISA assays were implemented to monitor cell viability, migration, apoptosis, angiogenesis and inflammation production. The putative binding relationship between miR-766-3p and circFKBP3 or TRAF3 was validated by dual-luciferase, RIP and pull-down assays. CircFKBP3 expression was elevated in OGD-treated HBMECs. OGD suppressed HBMEC viability, migration, angiogenesis, and provoked cell apoptosis and inflammation production, while knockdown of circFKBP3 attenuated these effects. CircFKBP3 interacted with miR-766-3p, and circFKBP3 absence-repressed HBMEC function loss and inflammation were recovered by miR-766-3p inhibition. CircFKBP3 targeted miR-766-3p to regulate TRAF3 expression. MiR-766-3p enrichment-repressed HBMEC function loss and inflammation were recovered by TRAF3 overexpression. CircFKBP3 absence alleviated OGD-induced function loss and inflammatory responses of HBMECs <i>via</i> governing the miR-766-3p/TRAF3 axis. CircFKBP3 expression is elevated in OGD-treated HBMECs. OGD-induced HBMEC function loss and inflammation are alleviated by circFKBP3 absence. CircFKBP3 directly targets miR-766-3p to regulate TRAF3 expression.
DOI: 10.13145/bacdive5907.20240510.9
title: Haloarcula quadrata Oren et al. 1999

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5908.20240510.9
title: Halobacterium salinarum (Harrison and Kennedy 1922) Elazari-Volcani 1957 emend. Gruber et al. 2004

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5909.20240510.9
title: Halobacterium salinarum (Harrison and Kennedy 1922) Elazari-Volcani 1957 emend. Gruber et al. 2004

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.6084/m9.figshare.28150805
title: Dataset1.xlsx

description: Aim: This study aims to evaluate the impact of 2D versus 3D imaging systems and barbed versus standard absorbable multifilament sutures on surgical times and complications in total laparoscopic hysterectomy. Methods: A retrospective cohort study was conducted at a tertiary hospital between May 2020 and September 2024. Patients who underwent total laparoscopic hysterectomy were categorized into four groups based on imaging system (4K UltraHD-2D vs. FullHD-3D) and suture type (VICRYL™ multifilament suture interrupted figure-of-8 technique vs. V-LOC™ barbed suture running technique). Primary outcomes included vaginal cuff closure time and total operation duration. Secondary outcomes were mean suturing time, perceived difficulty, and postoperative complications. Results: A total of 159 patients were analyzed. Vaginal cuff closure time was significantly shorter with 3D imaging systems compared to 2D systems when VICRYL™ sutures were used (13.85 ± 4.30 vs. 21.17 ± 5.13 minutes, p&lt;0.001). No significant difference was observed between imaging systems when V-LOC™ barbed sutures were used. Across both systems, VLOC™ sutures consistently reduced suturing time compared to VICRYL™ sutures (p&lt;0.001). Surgeon-perceived difficulty was lower with V-LOC™ sutures, particularly in 2D systems. No significant difference in complication rates was observed between groups (p=0.188). Conclusion: The use of 3D imaging systems in total laparoscopic hysterectomy significantly reduces vaginal cuff closure duration and overall operative time with VICRYL™ sutures, while V-LOC™ sutures consistently enable faster procedures across both imaging modalities. These findings suggest that 3D imaging systems and barbed sutures may enhance surgical efficiency without increasing complication rates. Keywords: Barbed sutures, Full HD 3D, Total laparoscopic hysterectomy, Ultra HD 2D,
DOI: 10.6084/m9.figshare.28150805.v1
title: Dataset1.xlsx

description: Aim: This study aims to evaluate the impact of 2D versus 3D imaging systems and barbed versus standard absorbable multifilament sutures on surgical times and complications in total laparoscopic hysterectomy. Methods: A retrospective cohort study was conducted at a tertiary hospital between May 2020 and September 2024. Patients who underwent total laparoscopic hysterectomy were categorized into four groups based on imaging system (4K UltraHD-2D vs. FullHD-3D) and suture type (VICRYL™ multifilament suture interrupted figure-of-8 technique vs. V-LOC™ barbed suture running technique). Primary outcomes included vaginal cuff closure time and total operation duration. Secondary outcomes were mean suturing time, perceived difficulty, and postoperative complications. Results: A total of 159 patients were analyzed. Vaginal cuff closure time was significantly shorter with 3D imaging systems compared to 2D systems when VICRYL™ sutures were used (13.85 ± 4.30 vs. 21.17 ± 5.13 minutes, p&lt;0.001). No significant difference was observed between imaging systems when V-LOC™ barbed sutures were used. Across both systems, VLOC™ sutures consistently reduced suturing time compared to VICRYL™ sutures (p&lt;0.001). Surgeon-perceived difficulty was lower with V-LOC™ sutures, particularly in 2D systems. No significant difference in complication rates was observed between groups (p=0.188). Conclusion: The use of 3D imaging systems in total laparoscopic hysterectomy significantly reduces vaginal cuff closure duration and overall operative time with VICRYL™ sutures, while V-LOC™ sutures consistently enable faster procedures across both imaging modalities. These findings suggest that 3D imaging systems and barbed sutures may enhance surgical efficiency without increasing complication rates. Keywords: Barbed sutures, Full HD 3D, Total laparoscopic hysterectomy, Ultra HD 2D,
DOI: 10.13145/bacdive5910.20240510.9
title: Halobacterium salinarum (Harrison and Kennedy 1922) Elazari-Volcani 1957 emend. Gruber et al. 2004

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5911.20240916.9.1
title: Halobacterium salinarum (Harrison and Kennedy 1922) Elazari-Volcani 1957 emend. Gruber et al. 2004

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5912.20240916.9.1
title: Halobacterium salinarum (Harrison and Kennedy 1922) Elazari-Volcani 1957 emend. Gruber et al. 2004

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5913.20240510.9
title: Halobacterium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5914.20240510.9
title: Halobacterium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5915.20240916.9.1
title: Halobacterium noricense Gruber et al. 2005

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5916.20240510.9
title: Halococcus morrhuae (Farlow 1880) Kocur and Hodgkiss 1973

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5917.20240510.9
title: Halococcus morrhuae (Farlow 1880) Kocur and Hodgkiss 1973

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5918.20240510.9
title: Halococcus morrhuae (Farlow 1880) Kocur and Hodgkiss 1973

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.14345308
title: IRIS imaging algorithm posterior samples for the DSHARP survey

description: Inferring sky surface brightness distributions from noisy interferometric data in a principled statistical framework has been a key challenge in radio astronomy. In this work, we introduce Imaging for Radio Interferometry with Score-based models (IRIS). We use score-based models trained on optical images of galaxies as an expressive prior in combination with a Gaussian likelihood in the uv-space to infer images of protoplanetary disks from visibility data of the DSHARP survey conducted by ALMA. We demonstrate the advantages of this framework compared with traditional radio interferometry imaging algorithms, showing that it produces plausible posterior samples despite the use of a misspecified galaxy prior. Through coverage testing on simulations, we empirically evaluate the accuracy of this approach to generate calibrated posterior samples. Our code is open source and freely available at https://github.com/EnceladeCandy/IRIS. This dataset includes 250 posterior samples for each protoplanetary disk from the DSHARP survey and the neural network weights for the different score-based models used in this work (https://arxiv.org/abs/2501.02473). Search for the notebook "3_zenodo_data.ipynb" in the tutorials folder of the github repository to better understand the structure of the dataset. Each protoplanetary disk has an associated .h5 file containing the posterior samples obtained with the VE PROBES prior. The RU Lup disk has different .h5 files, obtained with different priors. The filename contains the prior used. The HD 143006 disk has different .h5 files obtained with the VP SKIRT prior but different scaling factor. The scaling factor is in the filename in each case (or can be retrieved inside the .h5) file.The Elias 24 disk has different .h5 files,  obtained by changing the sampling procedure with the VE PROBES prior. The sampler ("euler" or "pc") is indicated in the filename. The specific parameters for the pc sampler can be found with the sampling_params key in the dataset. For the Euler sampler, the number of steps was fixed at 4000 steps.