cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13082711.v1
title: JVASP-6052 to JVASP-60579 (Negative bias)

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.13082816.v1
title: Additional file 2 of Analysis of the virus propagation profile of 14 dengue virus isolates in Aedes albopictus C6/36 cells

description: Additional file 2: Sheet 1 Raw data of plaque assay for Fig. 1. Sheet 2 Raw data of plaque assay for Fig. 2. Sheet 3 Statistical analysis of Fig. 1 data. Sheet 4 Statistical analysis of Fig. 2 data.
DOI: 10.6084/m9.figshare.13083249
title: Additional file 9 of Comparative transcriptome analysis suggests convergent evolution of desiccation tolerance in Selaginella species

description: Additional file 9: Table S1. List of subcategories of the MapMan analysis.
DOI: 10.6084/m9.figshare.13083249.v1
title: Additional file 9 of Comparative transcriptome analysis suggests convergent evolution of desiccation tolerance in Selaginella species

description: Additional file 9: Table S1. List of subcategories of the MapMan analysis.
DOI: 10.6084/m9.figshare.13083261.v1
title: Additional file 2 of Epigenomic landscape of enhancer elements during Hydra head organizer formation

description: Additional file 2: Table S1. Bed file for locations of ChIP-Seq and RNA-Seq peaks for genic regions in Hydra.
DOI: 10.6084/m9.figshare.13083267.v1
title: Additional file 4 of Epigenomic landscape of enhancer elements during Hydra head organizer formation

description: Additional file 4: Table S3. BED file for H3K27ac ChIP-Seq peaks on intergenic regions.
DOI: 10.6084/m9.figshare.13083270
title: Additional file 5 of Epigenomic landscape of enhancer elements during Hydra head organizer formation

description: Additional file 5: Table S4. BED file for H3K27ac ChIP-Seq peaks on intergenic regions enriched after ALP treatment.
DOI: 10.6084/m9.figshare.13083267
title: Additional file 4 of Epigenomic landscape of enhancer elements during Hydra head organizer formation

description: Additional file 4: Table S3. BED file for H3K27ac ChIP-Seq peaks on intergenic regions.
DOI: 10.6084/m9.figshare.13083276.v1
title: Additional file 7 of Epigenomic landscape of enhancer elements during Hydra head organizer formation

description: Additional file 7: Table S6. (a) Gene lists for the four clusters in Fig 3c. (b) List of genes upregulated in the head. (c) List of genes downregulated in the head.
DOI: 10.6084/m9.figshare.13083261
title: Additional file 2 of Epigenomic landscape of enhancer elements during Hydra head organizer formation

description: Additional file 2: Table S1. Bed file for locations of ChIP-Seq and RNA-Seq peaks for genic regions in Hydra.
DOI: 10.6084/m9.figshare.13083270.v1
title: Additional file 5 of Epigenomic landscape of enhancer elements during Hydra head organizer formation

description: Additional file 5: Table S4. BED file for H3K27ac ChIP-Seq peaks on intergenic regions enriched after ALP treatment.
DOI: 10.6084/m9.figshare.13083279.v1
title: Additional file 8 of Epigenomic landscape of enhancer elements during Hydra head organizer formation

description: Additional file 8: Table S7. Enrichment of PFAM terms in network analysis. Clustering of the genes identified in the STRING db and colour codes for the clusters generated.
DOI: 10.6084/m9.figshare.13083276
title: Additional file 7 of Epigenomic landscape of enhancer elements during Hydra head organizer formation

description: Additional file 7: Table S6. (a) Gene lists for the four clusters in Fig 3c. (b) List of genes upregulated in the head. (c) List of genes downregulated in the head.
DOI: 10.6084/m9.figshare.13083279
title: Additional file 8 of Epigenomic landscape of enhancer elements during Hydra head organizer formation

description: Additional file 8: Table S7. Enrichment of PFAM terms in network analysis. Clustering of the genes identified in the STRING db and colour codes for the clusters generated.
DOI: 10.6084/m9.figshare.13083264.v1
title: Additional file 3 of Epigenomic landscape of enhancer elements during Hydra head organizer formation

description: Additional file 3: Table S2. (a) ChIP-Seq peak annotation for H3K4me3 in whole Hydra polyps. (b) ChIP-Seq peak annotation for H3K27ac in whole Hydra polyps. (c) ChIP-Seq peak annotation for H3K9ac in whole Hydra polyps.
DOI: 10.6084/m9.figshare.13083264
title: Additional file 3 of Epigenomic landscape of enhancer elements during Hydra head organizer formation

description: Additional file 3: Table S2. (a) ChIP-Seq peak annotation for H3K4me3 in whole Hydra polyps. (b) ChIP-Seq peak annotation for H3K27ac in whole Hydra polyps. (c) ChIP-Seq peak annotation for H3K9ac in whole Hydra polyps.
DOI: 10.6084/m9.figshare.13083273
title: Additional file 6 of Epigenomic landscape of enhancer elements during Hydra head organizer formation

description: Additional file 6: Table S5. (a) Annotated protein list for genes nearest to intergenic regions with H3K27ac enriched after ALP treatment in cluster1. (b) Annotated protein list for genes nearest to intergenic regions with H3K27ac enriched after ALP treatment in cluster2. (c) Annotated protein list for genes nearest to intergenic regions with H3K27ac enriched after ALP treatment in cluster3. (d) Annotated protein list for genes nearest to intergenic regions with H3K27ac enriched after ALP treatment in cluster4.
DOI: 10.6084/m9.figshare.13083273.v1
title: Additional file 6 of Epigenomic landscape of enhancer elements during Hydra head organizer formation

description: Additional file 6: Table S5. (a) Annotated protein list for genes nearest to intergenic regions with H3K27ac enriched after ALP treatment in cluster1. (b) Annotated protein list for genes nearest to intergenic regions with H3K27ac enriched after ALP treatment in cluster2. (c) Annotated protein list for genes nearest to intergenic regions with H3K27ac enriched after ALP treatment in cluster3. (d) Annotated protein list for genes nearest to intergenic regions with H3K27ac enriched after ALP treatment in cluster4.
DOI: 10.6084/m9.figshare.13083282.v1
title: Additional file 9 of Epigenomic landscape of enhancer elements during Hydra head organizer formation

description: Additional file 9: Table S8. (a) Primer used for ChIP-qRT-PCR. (b) Relative luminiscence readings for the luciferase assay performed with the target intergenic regions (Source data for Fig. 4b) (c) ddCt values of H3K27ac occupancy estimated using ChIP-RT qPCR (Source data for Fig. 4c) (d) ddCt values of H3K27ac occupancy estimated using ChIP-RT qPCR (Source data for Fig. 5d).
DOI: 10.6084/m9.figshare.13083176
title: abx_serovars_typhimurium.csv

description: Distribution of antibiotic resistance genes across STs of S. Typhimurium
DOI: 10.6084/m9.figshare.13083176.v1
title: abx_serovars_typhimurium.csv

description: Distribution of antibiotic resistance genes across STs of S. Typhimurium
DOI: 10.6084/m9.figshare.13083282
title: Additional file 9 of Epigenomic landscape of enhancer elements during Hydra head organizer formation

description: Additional file 9: Table S8. (a) Primer used for ChIP-qRT-PCR. (b) Relative luminiscence readings for the luciferase assay performed with the target intergenic regions (Source data for Fig. 4b) (c) ddCt values of H3K27ac occupancy estimated using ChIP-RT qPCR (Source data for Fig. 4c) (d) ddCt values of H3K27ac occupancy estimated using ChIP-RT qPCR (Source data for Fig. 5d).
DOI: 10.6084/m9.figshare.13083327
title: Additional file 1 of Gene expression profiling reveals the effects of light on adventitious root formation in lotus seedlings (Nelumbo nucifera Gaertn.)

description: Additional file 1: Fig S1. Analysis of sequencing data saturation in CK, D, and E and F libraries. a. C0 library. b. D library. c. E library. d. F library. Differentially expressed genes in D/CK, E/CK, F/CK, and F/D. libraries. Table S1. Information on tags obtained by RNA-seq technology in all the libraries. Table S2.The primers of genes used for mRNA level analysis qRT-PCR method.
DOI: 10.6084/m9.figshare.13083327.v1
title: Additional file 1 of Gene expression profiling reveals the effects of light on adventitious root formation in lotus seedlings (Nelumbo nucifera Gaertn.)

description: Additional file 1: Fig S1. Analysis of sequencing data saturation in CK, D, and E and F libraries. a. C0 library. b. D library. c. E library. d. F library. Differentially expressed genes in D/CK, E/CK, F/CK, and F/D. libraries. Table S1. Information on tags obtained by RNA-seq technology in all the libraries. Table S2.The primers of genes used for mRNA level analysis qRT-PCR method.
DOI: 10.6084/m9.figshare.13083371
title: Additional file 1 of CT, US and MRI of xanthine urinary stones: in-vitro and in-vivo analyses

description: Additional file 1: In-vitro CT mean and SD values at four different KVP.
DOI: 10.6084/m9.figshare.13083371.v1
title: Additional file 1 of CT, US and MRI of xanthine urinary stones: in-vitro and in-vivo analyses

description: Additional file 1: In-vitro CT mean and SD values at four different KVP.
DOI: 10.6084/m9.figshare.13082705.v1
title: JVASP-6049 to JVASP-60525 (Negative bias)

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.13082705
title: JVASP-6049 to JVASP-60525 (Negative bias)

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.13082717
title: JVASP-6058 to JVASP-60776 (Negative bias)

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.13082717.v1
title: JVASP-6058 to JVASP-60776 (Negative bias)

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.13082723.v1
title: JVASP-6088 to JVASP-6172 (Negative bias)

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.13082723
title: JVASP-6088 to JVASP-6172 (Negative bias)

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.13082729
title: JVASP-8256 to JVASP-6346 (Negative bias)

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.13082729.v1
title: JVASP-8256 to JVASP-6346 (Negative bias)

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.11529609.v1
title: Data infromation-_original.pdf

description: Raw data for the present study, including the genotypes,isolation location and resistance status of each bacterial isolate (Data information - Raw data- Sequencing results.)
DOI: 10.6084/m9.figshare.13077398
title: Data infromation 1_original.xlsx

description: A prospective cross-sectional laboratory-based study of random of 100 non-lactose ferments Gram-negative bacilli secludes from blood and urine. Non-lactose fermenting Gram-negative (NLFGNB) bacilli have developed as significant nosocomial pathogens and often exhibit intrinsic multi-drug resistance. 16s rRNA gene sequencing could be utilized for robust identification. This study aimed to identify resistant NLFGNB associated with hospital-acquired infections using 16s rRNA sequencing and to detect the ESBL genes of isolates in Soba hospital, Khartoum State, Sudan
DOI: 10.6084/m9.figshare.13077398.v1
title: Data infromation 1_original.xlsx

description: A prospective cross-sectional laboratory-based study of random of 100 non-lactose ferments Gram-negative bacilli secludes from blood and urine. Non-lactose fermenting Gram-negative (NLFGNB) bacilli have developed as significant nosocomial pathogens and often exhibit intrinsic multi-drug resistance. 16s rRNA gene sequencing could be utilized for robust identification. This study aimed to identify resistant NLFGNB associated with hospital-acquired infections using 16s rRNA sequencing and to detect the ESBL genes of isolates in Soba hospital, Khartoum State, Sudan
DOI: 10.5281/zenodo.8159117
title: The impact of energy releasing B-vitamin intake on indices of obesity and cardiac function: a cross-sectional study

description: Supplementary file 1
DOI: 10.5281/zenodo.8167423
title: The impact of energy releasing B-vitamin intake on indices of obesity and cardiac function: a cross-sectional study

description: Study Questionnaire
DOI: 10.57702/0qzazwbd
title: Data for figures in paper "Evaluation of Light-Induced Electroluminescence in PV Field Applications"

description: This dataset contains the original data used for creating the figures 3,5,8-13 of the publication "Evaluation of Light-Induced Electroluminescence in PV Field Applications" in TIB Open Publishing.
DOI: 10.6084/m9.figshare.25880461
title: CDSHG of Tendon

description: Tiff stacks containing SHG images of unstained and H&E stained tendon using alternating left-right handed circularly polarized excitation.//add reference to paper when published.
DOI: 10.6084/m9.figshare.26411242
title: Supplementary Material for: Is cholecystectomy necessary after choledocholithiasis treatment for the elderly or patients with many comorbidities?

description: Introduction: We evaluated the prognosis after endoscopic treatment for choledocholithiasis, particularly in patients with borderline tolerance to surgery. Stone removal and cholecystectomy are generally recommended for patients with choledocholithiasis combined with gallstones to prevent recurrent biliary events. However, the prognosis after choledocholithiasis treatment in patients with borderline tolerance to surgery, such as the elderly or those with many comorbidities, remains controversial. 
Methods: We retrospectively analyzed data from patients with choledocholithiasis treated at our facility between January 2012 and December 2021. Patients who underwent endoscopic sphincterotomy were dichotomized into the cholecystectomy (CHOLE) and conservation (CONS) groups depending on whether cholecystectomy was performed, and their prognoses were subsequently compared. Furthermore, we performed a logistic regression analysis of the factors contributing to recurrent biliary events in patients with high age-adjusted Charlson Comorbidity Index (aCCI) scores.
Results: Of 169 participants, 110 had gallstones and were divided into the CHOLE (n=56) and CONS (n=54) groups. The CONS group was significantly ordered, had more comorbidities, and higher aCCI scores, whereas the CHOLE group had fewer recurrent biliary events, although not significant (P= 0.122). No difference was observed in the recurrent incidence of grade ≥ 2 biliary infections and mortality related to biliary events between the groups. In patients with aCCI scores ≥ 5, conservation without cholecystectomy was not an independent risk factor for recurrent biliary events.
Conclusion: Cholecystectomy after choledocholithiasis treatment prevents recurrent biliary events, but conservation without cholecystectomy is a feasible option for patients with high aCCI scores.
DOI: 10.6084/m9.figshare.26469643
title: Supplementary Material for: Preparation and Rationale for a Patient-Reported Clinical Outcome Assessment Set of Fluid Overload for Drug Development in Nephrotic Syndrome

description: Introduction:
Fluid overload is a source of substantial morbidity for adults and children with nephrotic syndrome (NS). Preparation and Rationale for a Fluid Overload in Nephrotic Syndrome Clinical Outcomes Assessment Set for Drug Development (Prepare-NS, 5UG3FD007308) was funded by the U.S. Food and Drug Administration to develop a core set of patient-reported and observer-reported (for young children) outcome measures of fluid overload for use in pharmaceutical trials across the lifespan.

Methods:
The Prepare-NS study team developed the proposed context of use with input from stakeholders. We conducted a scoping review to assess the available literature on relevant patient- and observer-reported measures and performed secondary analyses of existing qualitative and quantitative data. 

Results: 
The outcome set will aim to serve individuals two years of age and older with primary nephrotic syndrome conditions (specifically focal segmental glomerulosclerosis, minimal change disease, IgM nephropathy, membranous nephropathy, and childhood–onset nephrotic syndrome not biopsied). The existing literature describing patient reported outcomes in nephrotic syndrome largely relies on non-specific measures of health-related quality of life; fluid overload has been associated with lower scores on these measures. 

Conclusion:
To address the gap in measure availability and fluid overload content, the Prepare-NS team has launched a set of qualitative studies for concept elicitation from the population of interest to inform development of new measures. The resulting measures subsequently will undergo psychometric evaluation and validation in a survey study.
DOI: 10.15468/dl.qdr5ea
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Trimium libani J.Sahlberg, 1908",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102571-240626123714530/datasets/export for details.
DOI: 10.15468/dl.ay75xy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Entelecara erecta (L.Koch, 1869)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102572-240626123714530/datasets/export for details.
DOI: 10.15468/dl.frx9s4
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Lithobius lucifugus L.Koch, 1862",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 87 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102573-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13378580
title: ENDGAME - Laboratory Experiment 2024-03-20 Exp. 008 - High Speed Camera data

description: Preliminary 2D Shock-tube experiments in combination with high speed Schlieren shadow photography. 

We developed a 2D shock-tube setup using 2 glass sheets (1 cm width) separated by 2 lateral bars (gap between glass sheets 1.3 cm). We injected compressed air into the 2D setup at different overpressures (up to 8 bar). The high-pressure reservoir is connected with the 2D apparatus through a diaphragm pulse valve which allows a fast release of pressurized gas into the system. Images were collected at a frame rate of 30000 fps. The field of view of the images show the jet flow dynamics within the 2 glass sheets (vent is outside the field of view).
DOI: 10.5281/zenodo.13378581
title: ENDGAME - Laboratory Experiment 2024-03-20 Exp. 008 - High Speed Camera data

description: Preliminary 2D Shock-tube experiments in combination with high speed Schlieren shadow photography. 

We developed a 2D shock-tube setup using 2 glass sheets (1 cm width) separated by 2 lateral bars (gap between glass sheets 1.3 cm). We injected compressed air into the 2D setup at different overpressures (up to 8 bar). The high-pressure reservoir is connected with the 2D apparatus through a diaphragm pulse valve which allows a fast release of pressurized gas into the system. Images were collected at a frame rate of 30000 fps. The field of view of the images show the jet flow dynamics within the 2 glass sheets (vent is outside the field of view).
DOI: 10.15468/dl.3znan7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Trimium imitatum Reitter, 1882",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102574-240626123714530/datasets/export for details.
DOI: 10.15468/dl.zbkpc8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Entelecara frontalis (Ohlert, 1867)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102575-240626123714530/datasets/export for details.
DOI: 10.15468/dl.g2nxee
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Lithobius sciticus Prunescu, 1965",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102576-240626123714530/datasets/export for details.
DOI: 10.15468/dl.bqqc47
title: Occurrence Download

description: A dataset containing 3900 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is MBML-Mamiferos - Coleção de Mamíferos"
 ]
}

 The dataset includes 3900 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102577-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.apuhwd
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Halyomorpha halys (Stål, 1855))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1900",
 "BasisOfRecord is one of (Specimen, Human Observation, Material sample)",
 "Country is one of (Australia)",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than or equal to 1e+05",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102579-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f6g4hz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Trimium cavicolle Reitter, 1881",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102578-240626123714530/datasets/export for details.