cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6844046
title: MOESM2 of Enrichment of syngas-converting mixed microbial consortia for ethanol production and thermodynamics-based design of enrichment strategies

description: Additional file 2. Tables S1, S2. Relative taxonomic abundance at genus and species level for initial inocula and enrichment samples. Table S3. Normalized read counts mapping in all samples to Operational Taxonomic Units (OTUs) and their taxonomy classification.
DOI: 10.6084/m9.figshare.6844046.v1
title: MOESM2 of Enrichment of syngas-converting mixed microbial consortia for ethanol production and thermodynamics-based design of enrichment strategies

description: Additional file 2. Tables S1, S2. Relative taxonomic abundance at genus and species level for initial inocula and enrichment samples. Table S3. Normalized read counts mapping in all samples to Operational Taxonomic Units (OTUs) and their taxonomy classification.
DOI: 10.6084/m9.figshare.6843968.v3
title: Membangun Profil Akademis di Era Digital

description: Profil tidak hanya penting bagi sebuah perusahaan atau instansi semata, namun juga bagi seorang peneliti. Biografi singkat, topik penelitian yang diminati, rekam jejak publikasi, riwayat menjadi peer-reviewer, hingga aktivitas akademik lain seperti workshop, training, dan konferensi menjadi informasi mutlak yang dibutuhkan ketika kita ingin membangun jejaring, baik dalam lingkup nasional maupun global.<br>Pelatihan in house training ini bertujuan untuk mengajarkan kepada para peserta cara-cara efektif dan efisien untuk membangun citra melalui protofolio digital. Dengan demikian, Anda dengan profil Anda dapat lebih mudah dicari dan diakses oleh calon kolega Anda. Anda juga dapat membagikan riwayat akademik Anda hanya dalam satu tautan.<br>Apabila Anda berminat, silakan kontak melalui erickunto@unwidha.ac.id atau melalui link yang ada di bawah ini. Sebagai tambahan, saya berikan contoh portofolio yang saya buat. Anda dapat mengaksesnya melalui tautan-tautan yang ada di bawah ini.<br><br>
DOI: 10.6084/m9.figshare.6843938
title: Drug interaction screen in two yeast species

description: Raw cell growth measurements for drug interaction assays of 76 pairwise combinations in two yeast species. Each file contains a 64 column matrix of numbers, which corresponds to OD595 readings for one drug‐drug interaction. Rows correspond to different time points with 15 minutes intervals. Columns correspond to the 8 x 8 matrix of drug concentration combinations. Also included are (i) dose-response measurements for 12 drugs in two yeast species and (ii) interaction and selectivity scores for each drug pair.
DOI: 10.6084/m9.figshare.6843938.v1
title: Drug interaction screen in two yeast species

description: Raw cell growth measurements for drug interaction assays of 76 pairwise combinations in two yeast species. Each file contains a 64 column matrix of numbers, which corresponds to OD595 readings for one drug‐drug interaction. Rows correspond to different time points with 15 minutes intervals. Columns correspond to the 8 x 8 matrix of drug concentration combinations.
DOI: 10.6084/m9.figshare.6843938.v3
title: Drug interaction screen in two yeast species

description: Raw cell growth measurements for drug interaction assays of 76 pairwise combinations in two yeast species. Each file contains a 64 column matrix of numbers, which corresponds to OD595 readings for one drug‐drug interaction. Rows correspond to different time points with 15 minutes intervals. Columns correspond to the 8 x 8 matrix of drug concentration combinations. Also included are (i) dose-response measurements for 12 drugs in two yeast species and (ii) interaction and selectivity scores for each drug pair.
DOI: 10.6084/m9.figshare.6843938.v2
title: Drug interaction screen in two yeast species

description: Raw cell growth measurements for drug interaction assays of 76 pairwise combinations in two yeast species. Each file contains a 64 column matrix of numbers, which corresponds to OD595 readings for one drug‐drug interaction. Rows correspond to different time points with 15 minutes intervals. Columns correspond to the 8 x 8 matrix of drug concentration combinations. Also included are (i) dose-response measurements for 12 drugs in two yeast species and (ii) interaction and selectivity scores for each drug pair.
DOI: 10.17608/k6.auckland.6843881
title: Echoes of the Future

description: This report discusses ways to combine graphics output from the 'graphics' package and the 'grid' package in R and introduces a new function <code>echoGrob</code> in the 'gridGraphics' package.
DOI: 10.17608/k6.auckland.6843881.v1
title: Echoes of the Future

description: This report discusses ways to combine graphics output from the 'graphics' package and the 'grid' package in R and introduces a new function <code>echoGrob</code> in the 'gridGraphics' package.
DOI: 10.6084/m9.figshare.6843875
title: Imaging through wavy water surface

description: These two image sequences are acquired through a submerged camera.
DOI: 10.6084/m9.figshare.6843842
title: Data from "Assessing the diversity of Western North American Juga (Semisulcospiridae, Gastropoda)"

description: Phylogenetic Data matrices and Tree Files from the paper "Assessing the diversity of Western North American Juga (Semisulcospiridae, Gastropoda)" published in <i>Molecular Phylogenetics and Evolution</i>.<br>
DOI: 10.6084/m9.figshare.6843842.v1
title: Data from "Assessing the diversity of Western North American Juga (Semisulcospiridae, Gastropoda)"

description: Phylogenetic Data matrices and Tree Files from the paper "Assessing the diversity of Western North American Juga (Semisulcospiridae, Gastropoda)" published in <i>Molecular Phylogenetics and Evolution</i>.<br>
DOI: 10.6084/m9.figshare.6843794.v1
title: On the Use of the Lasso for Instrumental Variables Estimation with Some Invalid Instruments

description: We investigate the behaviour of the Lasso for selecting invalid instruments in linear instrumental variables models for estimating causal effects of exposures on outcomes, as proposed recently by Kang, Zhang, Cai and Small (2016, Journal of the American Statistical Association). Invalid instruments are such that they fail the exclusion restriction and enter the model as explanatory variables. We show that for this setup, the Lasso may not consistently select the invalid instruments if these are relatively strong. We propose a median estimator that is consistent when less than 50% of the instruments are invalid, and its consistency does not depend on the relative strength of the instruments, or their correlation structure. We show that this estimator can be used for adaptive Lasso estimation, with the resulting estimator having oracle properties. The methods are applied to a Mendelian randomisation study to estimate the causal effect of BMI on diastolic blood pressure, using data on individuals from the UK Biobank, with 96 single nucleotide polymorphisms as potential instruments for BMI.
DOI: 10.6084/m9.figshare.6843794.v2
title: On the Use of the Lasso for Instrumental Variables Estimation with Some Invalid Instruments

description: We investigate the behavior of the Lasso for selecting invalid instruments in linear instrumental variables models for estimating causal effects of exposures on outcomes, as proposed recently by Kang et al. Invalid instruments are such that they fail the exclusion restriction and enter the model as explanatory variables. We show that for this setup, the Lasso may not consistently select the invalid instruments if these are relatively strong. We propose a median estimator that is consistent when less than 50% of the instruments are invalid, and its consistency does not depend on the relative strength of the instruments, or their correlation structure. We show that this estimator can be used for adaptive Lasso estimation, with the resulting estimator having oracle properties. The methods are applied to a Mendelian randomization study to estimate the causal effect of body mass index (BMI) on diastolic blood pressure, using data on individuals from the UK Biobank, with 96 single nucleotide polymorphisms as potential instruments for BMI. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.6843785.v1
title: Multiple testing when many <i>p</i>-values are uniformly conservative, with application to testing qualitative interaction in educational interventions

description: In the evaluation of treatment effects, it is of major policy interest to know if the treatment is beneficial for some and harmful for others, a phenomenon known as qualitative interaction. We formulate this question as a multiple testing problem with many conservative null <i>p</i>-values, in which the classical multiple testing methods may lose power substantially. We propose a simple technique—conditioning—to improve the power. A crucial assumption we need is uniform conservativeness, meaning for any conservative <i>p</i>-value <i>p</i>, the conditional distribution (<i>p</i>/τ) | <i>p</i> ⩽ τ is stochastically larger than the uniform distribution on (0, 1) for any τ. We show this property holds for one-sided tests in a one-dimensional exponential family (e.g. testing for qualitative interaction) as well as testing |μ| ⩽ η using a statistic <i>Y</i> ∼ N(μ, 1) (e.g. testing for practical importance with threshold η). We propose an adaptive method to select the threshold τ. Our theoretical and simulation results suggest the proposed tests gain significant power when many <i>p</i>-values are uniformly conservative and lose little power when no <i>p</i>-value is uniformly conservative. We apply our method to two educational intervention datasets.
DOI: 10.6084/m9.figshare.6843785.v2
title: Multiple Testing When Many <i>p</i>-Values are Uniformly Conservative, with Application to Testing Qualitative Interaction in Educational Interventions

description: In the evaluation of treatment effects, it is of major policy interest to know if the treatment is beneficial for some and harmful for others, a phenomenon known as qualitative interaction. We formulate this question as a multiple testing problem with many conservative null <i>p</i>-values, in which the classical multiple testing methods may lose power substantially. We propose a simple technique—conditioning—to improve the power. A crucial assumption we need is uniform conservativeness, meaning for any conservative <i>p</i>-value <i>p</i>, the conditional distribution (<i>p</i>/τ) | <i>p</i> ⩽ τ is stochastically larger than the uniform distribution on (0, 1) for any τ. We show this property holds for one-sided tests in a one-dimensional exponential family (e.g., testing for qualitative interaction) as well as testing |μ| ⩽ η using a statistic <i>Y</i> ∼ N(μ, 1) (e.g., testing for practical importance with threshold η). We propose an adaptive method to select the threshold τ. Our theoretical and simulation results suggest that the proposed tests gain significant power when many <i>p</i>-values are uniformly conservative and lose little power when no <i>p</i>-value is uniformly conservative. We apply our method to two educational intervention datasets. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.6843773
title: The Two-Arm Coordination Test: Maturation of Bimanual Coordination in Typically Developing Children and Deficits in Children with Unilateral Cerebral Palsy

description: <b>Background:</b> Tools to assess bimanual coordination are scant. We aimed to: 1) provide normative data of maturation of bimanual coordination in tipically developing (TD) children measured by the Two Arm Coordination Test (TACT), and 2) validate the TACT as an instrument to specifically discriminate impairment of bimanual coordination in children with unilateral cerebral palsy (UCP). <b>Procedure:</b> Cross-sectional observational study. 252 TD children and 26 children with UCP performed 8 trials of TACT (following a star pattern with a pointer steered by coordinated movements of both arms). Number of errors and time were combined in a performance index of motor learning.<b>Results:</b> In TD children, bimanual coordination improved with age (F(7,244)=36.888, p24.25, all p-.452, all pConclusion: TACT is a valid instrument to assess bimanual coordination.
DOI: 10.6084/m9.figshare.6843770
title: On Metal Binding Specificity of the Metalloproteome: Supplementary file 3

description: Excel workbook containing two spreadsheets. <br>The first spreadsheet contains f-scores for the distribution of residues binding one type of metal compared to the distribution of residues binding all other types of metal in the dataset for cumulative features based on neighborhoods of amino acids from amino acid covariance scores.<br>The second spreadsheet contains f-scores representing pairwise comparisons of the distributions of residues binding two different metals in the dataset for cumulative features based on neighborhoods of amino acids from amino acid covariance scores.<br>
DOI: 10.6084/m9.figshare.6843770.v1
title: On Metal Binding Specificity of the Metalloproteome: Supplementary file 3

description: Excel workbook containing two spreadsheets. <br>The first spreadsheet contains f-scores for the distribution of residues binding one type of metal compared to the distribution of residues binding all other types of metal in the dataset for cumulative features based on neighborhoods of amino acids from amino acid covariance scores.<br>The second spreadsheet contains f-scores representing pairwise comparisons of the distributions of residues binding two different metals in the dataset for cumulative features based on neighborhoods of amino acids from amino acid covariance scores.<br>
DOI: 10.6084/m9.figshare.6843755
title: On Metal Binding Specificity of the Metalloproteome: Supplementary File 2

description: Excel spreadsheet containing f-scores for the distribution of metal-binding residues against the distribution of non-metal-binding residues for cumulative features based on neighborhoods of amino acids from amino acid covariance scores
DOI: 10.6084/m9.figshare.6843755.v1
title: On Metal Binding Specificity of the Metalloproteome: Supplementary File 2

description: Excel spreadsheet containing f-scores for the distribution of metal-binding residues against the distribution of non-metal-binding residues for cumulative features based on neighborhoods of amino acids from amino acid covariance scores
DOI: 10.6084/m9.figshare.6843722
title: On Metal Binding Specificity of the Metalloproteome: Supplementary File 1

description: FASTA Sequences corresponding to entries in BioLiP for metalloproteins.
DOI: 10.6084/m9.figshare.6843722.v1
title: On Metal Binding Specificity of the Metalloproteome: Supplementary File 1

description: FASTA Sequences corresponding to entries in BioLiP for metalloproteins.
DOI: 10.6084/m9.figshare.6843701
title: Microbes follow Humboldt: temperature drives plant and soil microbial diversity patterns from the Amazon to the Andes

description: Soil microbial diversity, by high-throughput sequencing data to characterise the variation in marker gene sequences, for 14 sites along a 3000 m elevation gradient in tropical forest in Peru. For bacterial community composition, the 16S rRNA gene was amplified in triplicate PCR reactions using the 515f and 806r primers. For fungal community composition, the first internal transcribed spacer region (ITS1) of the rRNA gene was amplified using the ITS1-F and ITS2 primer pair.
DOI: 10.6084/m9.figshare.6843656
title: S12_Fig. data of water contact angle values

description: It shows the water contact angle values
DOI: 10.6084/m9.figshare.6843638
title: S13_Fig. Stress vs. strain behavior of carbon composite with a nano mat of PAN-derived carbon fiber at the top of assembly.

description: explaining Stress vs. strain behavior of carbon composite with a nano mat of PAN-derived carbon fiber at the top of assembly.
DOI: 10.6084/m9.figshare.6843638.v2
title: S13_Fig. Stress vs. strain behavior of carbon composite with a nano mat of PAN-derived carbon fiber at the top of assembly.

description: explaining Stress vs. strain behavior of carbon composite with a nano mat of PAN-derived carbon fiber at the top of assembly.
DOI: 10.6084/m9.figshare.6843656.v2
title: S12_Fig. data of water contact angle values

description: It shows the water contact angle values
DOI: 10.6084/m9.figshare.6843656.v1
title: S1_Fig. data of water contact angle values

description: It shows the water contact angle values
DOI: 10.6084/m9.figshare.6843629
title: S10 Fig. Raman spectra verified of Polyacrylonitrile PAN fibers carbonized at 950oC.

description: explain the Raman spectra verified of Polyacrylonitrile PAN fibers carbonized at 950oC.
DOI: 10.6084/m9.figshare.6843638.v1
title: S12_Fig. Histogram of static water contact angle values after at 750oC, Carbonization at 850oC and Carbonization at 950oC.

description: show the Histogram of static water contact angle values after at 750oC, Carbonization at 850oC and Carbonization at 950oC.
DOI: 10.6084/m9.figshare.6843629.v1
title: S10 Fig. Raman spectra verified of Polyacrylonitrile PAN fibers carbonized at 950oC.

description: explain the Raman spectra verified of Polyacrylonitrile PAN fibers carbonized at 950oC.
DOI: 10.6084/m9.figshare.6843620
title: S7_Fig. Raman spectra of Bulk PAN Polymer carbonized at 950oC.

description: Explain how Raman spectra of Bulk PAN Polymer carbonized at 950oC.
DOI: 10.6084/m9.figshare.6843608
title: Species Data for Biome Affiliation, Range Size, and Threat Status

description: Dataset for species' geographic range size, assigned biome affiliation, and IUCN Red List Threat Status.
DOI: 10.6084/m9.figshare.6843620.v1
title: S7_Fig. Raman spectra of Bulk PAN Polymer carbonized at 950oC.

description: Explain how Raman spectra of Bulk PAN Polymer carbonized at 950oC.
DOI: 10.6084/m9.figshare.6843605
title: S5 Fig. DSC thermogram of bulk PAN polymer.

description: Explain DSC thermogram of bulk PAN polymer.
DOI: 10.6084/m9.figshare.6843605.v1
title: S5 Fig. DSC thermogram of bulk PAN polymer.

description: Explain DSC thermogram of bulk PAN polymer.
DOI: 10.6084/m9.figshare.6843575
title: Amphibian Habitat-Occurrence Data

description: Data on species-level occurrences across habitat types with associated data on evolutionary distinctiveness and natal biome affiliation.
DOI: 10.6084/m9.figshare.6843575.v1
title: Amphibian Habitat-Occurrence Data

description: Data on species-level occurrences across habitat types with associated data on evolutionary distinctiveness and natal biome affiliation.
DOI: 10.6084/m9.figshare.6843602
title: Energy from Waste (EfW) Ontology In Use - Prototype Snapshots & Supplemental Information

description: UI snapshots - from web-based JavaScript prototype, built using D3
DOI: 10.6084/m9.figshare.6843536
title: R script 2. R code used to conduct disparity analyses. from Morphological variation under domestication: how variable are chickens?

description: The process of domestication has long fascinated evolutionary biologists, yielding insights into the rapidity with which selection can alter behaviour and morphology. Previous studies on dogs, cattle and pigeons have demonstrated that domesticated forms show greater magnitudes of morphological variation than their wild ancestors. Here, we quantify variation in skull morphology, modularity and integration in chickens and compare those to the wild fowl using three-dimensional geometric morphometrics and multivariate statistics. Similar to other domesticated species, chickens exhibit a greater magnitude of variation in shape compared with their ancestors. The most variable part of the chicken skull is the cranial vault, being formed by dermal and neural crest-derived bones, its form possibly related to brain shape variation in chickens, especially in crested breeds. Neural crest-derived portions of the skull exhibit a higher amount of variation. Further, we find that the chicken skull is strongly integrated, confirming previous studies in birds, in contrast to the presence of modularity and decreased integration in mammals.
DOI: 10.6084/m9.figshare.6843533
title: Input.xlsx from Morphological variation under domestication: how variable are chickens?

description: The process of domestication has long fascinated evolutionary biologists, yielding insights into the rapidity with which selection can alter behaviour and morphology. Previous studies on dogs, cattle and pigeons have demonstrated that domesticated forms show greater magnitudes of morphological variation than their wild ancestors. Here, we quantify variation in skull morphology, modularity and integration in chickens and compare those to the wild fowl using three-dimensional geometric morphometrics and multivariate statistics. Similar to other domesticated species, chickens exhibit a greater magnitude of variation in shape compared with their ancestors. The most variable part of the chicken skull is the cranial vault, being formed by dermal and neural crest-derived bones, its form possibly related to brain shape variation in chickens, especially in crested breeds. Neural crest-derived portions of the skull exhibit a higher amount of variation. Further, we find that the chicken skull is strongly integrated, confirming previous studies in birds, in contrast to the presence of modularity and decreased integration in mammals.
DOI: 10.6084/m9.figshare.6843536.v1
title: R script 2. R code used to conduct disparity analyses. from Morphological variation under domestication: how variable are chickens?

description: The process of domestication has long fascinated evolutionary biologists, yielding insights into the rapidity with which selection can alter behaviour and morphology. Previous studies on dogs, cattle and pigeons have demonstrated that domesticated forms show greater magnitudes of morphological variation than their wild ancestors. Here, we quantify variation in skull morphology, modularity and integration in chickens and compare those to the wild fowl using three-dimensional geometric morphometrics and multivariate statistics. Similar to other domesticated species, chickens exhibit a greater magnitude of variation in shape compared with their ancestors. The most variable part of the chicken skull is the cranial vault, being formed by dermal and neural crest-derived bones, its form possibly related to brain shape variation in chickens, especially in crested breeds. Neural crest-derived portions of the skull exhibit a higher amount of variation. Further, we find that the chicken skull is strongly integrated, confirming previous studies in birds, in contrast to the presence of modularity and decreased integration in mammals.
DOI: 10.6084/m9.figshare.6843533.v1
title: Input.xlsx from Morphological variation under domestication: how variable are chickens?

description: The process of domestication has long fascinated evolutionary biologists, yielding insights into the rapidity with which selection can alter behaviour and morphology. Previous studies on dogs, cattle and pigeons have demonstrated that domesticated forms show greater magnitudes of morphological variation than their wild ancestors. Here, we quantify variation in skull morphology, modularity and integration in chickens and compare those to the wild fowl using three-dimensional geometric morphometrics and multivariate statistics. Similar to other domesticated species, chickens exhibit a greater magnitude of variation in shape compared with their ancestors. The most variable part of the chicken skull is the cranial vault, being formed by dermal and neural crest-derived bones, its form possibly related to brain shape variation in chickens, especially in crested breeds. Neural crest-derived portions of the skull exhibit a higher amount of variation. Further, we find that the chicken skull is strongly integrated, confirming previous studies in birds, in contrast to the presence of modularity and decreased integration in mammals.