cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6btxf2
title: Occurrence Download

description: A dataset containing 166 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eugenia capparidifolia DC."
 ]
}

 The dataset includes 166 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158857-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.73d8y5
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epidendrum batesii Dodson"
 ]
}

 The dataset includes 18 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158856-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6vbpva
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arenaria stracheyi Edgew.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 38 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0319540-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kmeugf
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriocaulon spongiosifolium Silveira"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158855-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dpgtmt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba okamotoi Ohwi"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061994-231120084113126/datasets/export for details.
DOI: 10.15468/dl.jjjkhg
title: Occurrence Download

description: A dataset containing 664 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Argentina",
 "Country is Brazil",
 "Country is Uruguay"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Sporophila pileata (P.L.Sclater, 1865)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 664 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015523-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uga9ky
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Ipomoea caudata Fernald"
 ]
}

 The dataset includes 63 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004365-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.az5z0k
title: Occurrence Download

description: A dataset containing 7896 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1960-2017",
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Carex atrofusca Schkuhr",
 "TaxonKey is Carex bicolor Bellardi",
 "TaxonKey is Carex bicolor Bellardi ex All.",
 "TaxonKey is Carex glacialis Mack.",
 "TaxonKey is Carex glareosa Schkuhr ex Wahlenb.",
 "TaxonKey is Carex glareosa Schkuhr"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7896 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010346-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6af5sg
title: Occurrence Download

description: A dataset containing 2669 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba oligosperma Hook."
 ]
}

 The dataset includes 2669 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061996-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jgeaze
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arenaria trichophylla C.Y.Wu",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0319542-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9amxcf
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba pohlei Tolm."
 ]
}

 The dataset includes 33 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062033-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xa12jo
title: Occurrence Download

description: A dataset containing 5947 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oreochromis mossambicus (Peters, 1852)"
 ]
}

 The dataset includes 5947 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015529-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.trdngv
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Artemisia nanschanica Krasch.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 62 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0319549-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3tfjl
title: Occurrence Download

description: A dataset containing 35322 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Animal Sound Archive"
 ]
}

 The dataset includes 35322 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015537-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.75m6e4
title: Occurrence Download

description: A dataset containing 531 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Macrocephalon maleo S.Müller, 1846"
 ]
}

 The dataset includes 531 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062027-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7qftjv
title: Occurrence Download

description: A dataset containing 2463443 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Guatemala"
 ]
}

 The dataset includes 2463443 records from 1114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0289316-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.23001821.v1
title: Additional file 2 of Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations

description: Additional file 2: Supplementary Data 2. The taxonomic annotation of 653 metagenome-assembled genomes (MAGs).
DOI: 10.6084/m9.figshare.23001827
title: Additional file 4 of Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations

description: Additional file 4: Supplementary Data 4. Two thousand three hundred thirty-four biosynthetic gene clusters (BGCs) and their distributions in gene cluster families (GCFs).
DOI: 10.6084/m9.figshare.23001827.v1
title: Additional file 4 of Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations

description: Additional file 4: Supplementary Data 4. Two thousand three hundred thirty-four biosynthetic gene clusters (BGCs) and their distributions in gene cluster families (GCFs).
DOI: 10.6084/m9.figshare.23001824
title: Additional file 3 of Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations

description: Additional file 3: Supplementary Data 3. The statistical analysis for the associations between phyla/clusters/BGC types and food fermentation types/groups.
DOI: 10.6084/m9.figshare.23001824.v1
title: Additional file 3 of Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations

description: Additional file 3: Supplementary Data 3. The statistical analysis for the associations between phyla/clusters/BGC types and food fermentation types/groups.
DOI: 10.6084/m9.figshare.23001818
title: Additional file 1 of Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations

description: Additional file 1: Supplementary Data 1. Description of the metagenomic sequencing data of 367 food fermentation samples.
DOI: 10.6084/m9.figshare.23001830
title: Additional file 5 of Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations

description: Additional file 5: Supplementary Data 5. The members of a healthy human gut microbiome in the 40 shared species between food fermentations and human gut.
DOI: 10.6084/m9.figshare.23001818.v1
title: Additional file 1 of Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations

description: Additional file 1: Supplementary Data 1. Description of the metagenomic sequencing data of 367 food fermentation samples.
DOI: 10.6084/m9.figshare.23001830.v1
title: Additional file 5 of Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations

description: Additional file 5: Supplementary Data 5. The members of a healthy human gut microbiome in the 40 shared species between food fermentations and human gut.
DOI: 10.6084/m9.figshare.23001833
title: Additional file 6 of Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations

description: Additional file 6: Supplementary Data 6. Seventy-three known biosynthetic gene clusters (BGCs) and predicted biological activities of their products.
DOI: 10.6084/m9.figshare.23001833.v1
title: Additional file 6 of Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations

description: Additional file 6: Supplementary Data 6. Seventy-three known biosynthetic gene clusters (BGCs) and predicted biological activities of their products.
DOI: 10.21227/td0w-ka32
title: IEEEXtreme 13: Pair Swap Teams

description: This dataset contains a total of 2143 submissions, with 1% correct solutions and 45% partial solutions. Link to the original challenge: https://csacademy.com/ieeextreme-practice/task/pair-swap-teams/ See the included PDF document for details about the original challenge.
DOI: 10.6084/m9.figshare.23001857
title: Additional file 5 of An entomopathogenic fungus exploits its host humoral antibacterial immunity to minimize bacterial competition in the hemolymph

description: Additional file 5: Table S1. The primers used in this study.
DOI: 10.6084/m9.figshare.23001857.v1
title: Additional file 5 of An entomopathogenic fungus exploits its host humoral antibacterial immunity to minimize bacterial competition in the hemolymph

description: Additional file 5: Table S1. The primers used in this study.
DOI: 10.6084/m9.figshare.23001863
title: Additional file 6 of An entomopathogenic fungus exploits its host humoral antibacterial immunity to minimize bacterial competition in the hemolymph

description: Additional file 6: Table S2. The proteins detected exclusively in the plasmacollected from PBS (PPB)-injected or blastospore (PBL)-injected groups at 48 hpi.
DOI: 10.6084/m9.figshare.23001863.v1
title: Additional file 6 of An entomopathogenic fungus exploits its host humoral antibacterial immunity to minimize bacterial competition in the hemolymph

description: Additional file 6: Table S2. The proteins detected exclusively in the plasmacollected from PBS (PPB)-injected or blastospore (PBL)-injected groups at 48 hpi.
DOI: 10.6084/m9.figshare.23001866
title: Additional file 7 of An entomopathogenic fungus exploits its host humoral antibacterial immunity to minimize bacterial competition in the hemolymph

description: Additional file 7: Table S3. The proteins shared between the plasma collected from PBS (PPB)-injected and blastospore (PBL)-injected groups at 48 hpi.
DOI: 10.6084/m9.figshare.23001866.v1
title: Additional file 7 of An entomopathogenic fungus exploits its host humoral antibacterial immunity to minimize bacterial competition in the hemolymph

description: Additional file 7: Table S3. The proteins shared between the plasma collected from PBS (PPB)-injected and blastospore (PBL)-injected groups at 48 hpi.
DOI: 10.6084/m9.figshare.23001869
title: Additional file 8 of An entomopathogenic fungus exploits its host humoral antibacterial immunity to minimize bacterial competition in the hemolymph

description: Additional file 8: Table S4. The differentially expressed genes (DEGs) identified in the midgut of the larvae at 12 hpi of M. rileyi blastospores and PBS.
DOI: 10.6084/m9.figshare.23001869.v1
title: Additional file 8 of An entomopathogenic fungus exploits its host humoral antibacterial immunity to minimize bacterial competition in the hemolymph

description: Additional file 8: Table S4. The differentially expressed genes (DEGs) identified in the midgut of the larvae at 12 hpi of M. rileyi blastospores and PBS.
DOI: 10.6084/m9.figshare.23001872
title: Additional file 9 of An entomopathogenic fungus exploits its host humoral antibacterial immunity to minimize bacterial competition in the hemolymph

description: Additional file 9: Table S5. The gut and hemolymph operational taxonomic unit (OTU) taxonomy from the larvae at 48 hpi of M. rileyi blastospores or PBS.
DOI: 10.6084/m9.figshare.23001872.v1
title: Additional file 9 of An entomopathogenic fungus exploits its host humoral antibacterial immunity to minimize bacterial competition in the hemolymph

description: Additional file 9: Table S5. The gut and hemolymph operational taxonomic unit (OTU) taxonomy from the larvae at 48 hpi of M. rileyi blastospores or PBS.
DOI: 10.5281/zenodo.10723784
title: Image Dataset, COLMAP outputs, and GS Reconstruction of MIT CSAIL Holodeck
DOI: 10.5281/zenodo.10723785
title: Image Dataset, COLMAP outputs, and GS Reconstruction of MIT CSAIL Holodeck
DOI: 10.5522/04/24574762
title: Are we using the relevant questionnaires to assess health related quality of life in multiple myeloma patients in the era of new generation targeted and novel immunotherapies?

description:   Therapeutic advances have significantly improved the survival of multiple myeloma (MM) patients. Clinicians and researchers should ensure that patients with this incurable cancer are not only living longer, but also living better. Several validated questionnaires are available and frequently used to assess health related quality of life (HRQOL). However, they were developed &gt;20 years ago before the era of new generation treatments, which have unique toxicity profiles. Introduction of new treatment combinations and maintenance therapies also means that these questionnaires may not be able to fully capture all HRQOL aspects. To better understand which of these aspects are truly important, we asked MM patients and healthcare professionals (HCP) from a single centre to indicate the level of relevance of each item in 9 HRQOL questionnaires. Our results revealed that patients ranked items related to social functioning, receiving information about MM and involvement in their management as most relevant. In contrast, HCPs placed highest relevance to items corresponding to symptoms from MM or treatment toxicities. Subgroup analysis of patients revealed additional topics that were deemed relevant: those ≤70 y.o. were more concerned about disease progression whereas those &gt;70 y.o. prioritised items related to physical function; patients with renal impairment and bone disease found having energy and pain more relevant than in the general MM cohort. These findings can contribute to guiding the content development of new HRQOL tools relevant to both MM patients as a whole, as well as specific subgroups receiving newer treatments.
DOI: 10.5522/04/24574762.v1
title: Are we using the relevant questionnaires to assess health related quality of life in multiple myeloma patients in the era of new generation targeted and novel immunotherapies?

description:   Therapeutic advances have significantly improved the survival of multiple myeloma (MM) patients. Clinicians and researchers should ensure that patients with this incurable cancer are not only living longer, but also living better. Several validated questionnaires are available and frequently used to assess health related quality of life (HRQOL). However, they were developed &gt;20 years ago before the era of new generation treatments, which have unique toxicity profiles. Introduction of new treatment combinations and maintenance therapies also means that these questionnaires may not be able to fully capture all HRQOL aspects. To better understand which of these aspects are truly important, we asked MM patients and healthcare professionals (HCP) from a single centre to indicate the level of relevance of each item in 9 HRQOL questionnaires. Our results revealed that patients ranked items related to social functioning, receiving information about MM and involvement in their management as most relevant. In contrast, HCPs placed highest relevance to items corresponding to symptoms from MM or treatment toxicities. Subgroup analysis of patients revealed additional topics that were deemed relevant: those ≤70 y.o. were more concerned about disease progression whereas those &gt;70 y.o. prioritised items related to physical function; patients with renal impairment and bone disease found having energy and pain more relevant than in the general MM cohort. These findings can contribute to guiding the content development of new HRQOL tools relevant to both MM patients as a whole, as well as specific subgroups receiving newer treatments.
DOI: 10.6084/m9.figshare.14089029
title: TDRD7 participates in lens development and spermiogenesis by mediating autophagosome maturation

description: In humans, <i>TDRD7</i> (tudor domain containing 7) mutations lead to a syndrome combining congenital cataracts (CCs) and non-obstructive azoospermia (NOA), characterized by abnormal lens development and spermiogenesis. However, the molecular mechanism underlying TDRD7’s functions in eye and testicular development are still largely unknown. Here, we show that the depletion of this gene in mice and humans resulted in the accumulation of autophagosomes and the disruption of macroautophagic/autophagic flux. The disrupted autophagic flux in <i>tdrd7-</i>deficient mouse embryonic fibroblasts (MEFs) was caused by a failure of autophagosome fusion with lysosomes. Furthermore, transcriptome analysis and biochemical assays showed that TDRD7 might directly bind to <i>Tbc1d20</i> mRNAs and downregulate its expression, which is a key regulator of autophagosome maturation, resulting in the disruption of autophagosome maturation. In addition, we provide evidence to show that TDRD7-mediated autophagosome maturation maintains lens transparency by facilitating the removal of damaged proteins and organelles from lens fiber cells and the biogenesis of acrosome. Altogether, our results showed that TDRD7 plays an essential role in the maturation of autophagosomes and that <i>tdrd7</i> deletion results in eye defects and testicular abnormalities in mice, implicating disrupted autophagy might be the mechanism that contributes to lens development and spermiogenesis defects in human. <b>Abbreviations</b>: CB: chromatoid bodies; CC: congenital cataract; CTSD: cathepsin D; DMSO: dimethyl sulfoxide; LAMP1: lysosomal-associated membrane protein 1; LECs: lens epithelial cells; MAP1LC3/LC3/Atg8: microtubule-associated protein 1 light chain 3; MEFs: mouse embryonic fibroblasts; NOA: non-obstructive azoospermia; OFZ: organelle-free zone; RG: RNA granules; SQSTM1/p62: sequestosome 1; TBC1D20: TBC1 domain family member 20; TDRD7: tudor domain containing 7; TEM: transmission electron microscopy; WT: wild type.
DOI: 10.6084/m9.figshare.14089029.v1
title: TDRD7 participates in lens development and spermiogenesis by mediating autophagosome maturation

description: In humans, <i>TDRD7</i> (tudor domain containing 7) mutations lead to a syndrome combining congenital cataracts (CCs) and non-obstructive azoospermia (NOA), characterized by abnormal lens development and spermiogenesis. However, the molecular mechanism underlying TDRD7’s functions in eye and testicular development are still largely unknown. Here, we show that the depletion of this gene in mice and humans resulted in the accumulation of autophagosomes and the disruption of macroautophagic/autophagic flux. The disrupted autophagic flux in <i>tdrd7-</i>deficient mouse embryonic fibroblasts (MEFs) was caused by a failure of autophagosome fusion with lysosomes. Furthermore, transcriptome analysis and biochemical assays showed that TDRD7 might directly bind to <i>Tbc1d20</i> mRNAs and downregulate its expression, which is a key regulator of autophagosome maturation, resulting in the disruption of autophagosome maturation. In addition, we provide evidence to show that TDRD7-mediated autophagosome maturation maintains lens transparency by facilitating the removal of damaged proteins and organelles from lens fiber cells and the biogenesis of acrosome. Altogether, our results showed that TDRD7 plays an essential role in the maturation of autophagosomes and that <i>tdrd7</i> deletion results in eye defects and testicular abnormalities in mice, implicating disrupted autophagy might be the mechanism that contributes to lens development and spermiogenesis defects in human. <b>Abbreviations</b>: CB: chromatoid bodies; CC: congenital cataract; CTSD: cathepsin D; DMSO: dimethyl sulfoxide; LAMP1: lysosomal-associated membrane protein 1; LECs: lens epithelial cells; MAP1LC3/LC3/Atg8: microtubule-associated protein 1 light chain 3; MEFs: mouse embryonic fibroblasts; NOA: non-obstructive azoospermia; OFZ: organelle-free zone; RG: RNA granules; SQSTM1/p62: sequestosome 1; TBC1D20: TBC1 domain family member 20; TDRD7: tudor domain containing 7; TEM: transmission electron microscopy; WT: wild type.
DOI: 10.6084/m9.figshare.8846174
title: The genome assembly of Carpinus fangiana

description: In this study, we assembled a chromosomal-level reference genome of Carpinus fangiana (Coryloideae,Betulaceae)