cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4121/16763758.v1
title: Raw data and code for the article "Topological barriers to defect nucleation generate large mechanical forces in an ordered fluid"

description: This collection contains raw data and code for the research article "Topological barriers to defect nucleation generate large mechanical forces in an ordered fluid" to be published in the Proceeding of the National Academy of Sciences of the USA (PNAS). The mechanical response of a cholesteric liquid crystal film with planar anchoring conditions was investigated using a surface forces apparatus (SFA). The film showed a strongly asymmetric response during compression and dilation. Notably, very large repulsive forces were generated during compression. The asymmetry was explained using a simple model of elastic deformation including line tension of dislocation defects, reminescent of nucleation theory in first order phase transitions.<br>
DOI: 10.4121/16763758
title: Raw data and code for the article "Topological barriers to defect nucleation generate large mechanical forces in an ordered fluid"

description: This collection contains raw data and code for the research article "Topological barriers to defect nucleation generate large mechanical forces in an ordered fluid" to be published in the Proceeding of the National Academy of Sciences of the USA (PNAS). The mechanical response of a cholesteric liquid crystal film with planar anchoring conditions was investigated using a surface forces apparatus (SFA). The film showed a strongly asymmetric response during compression and dilation. Notably, very large repulsive forces were generated during compression. The asymmetry was explained using a simple model of elastic deformation including line tension of dislocation defects, reminescent of nucleation theory in first order phase transitions.<br>
DOI: 10.4121/14406347.v1
title: Data from: "Using legacy data to reconstruct the past? Rescue, rigor and reuse in peatland geochronology"

description: There is a growing interest for rescue and reuse of data from past studies (so-called legacy data). Data loss is alarming, especially where natural archives are under threat, such as peat deposits. Here we develop a workflow for reuse of legacy radiocarbon dates in peatland studies, including a rigorous quality assessment that can be tailored to specific research questions and study regions. A penalty score is assigned to each date based on criteria that consider taphonomic quality (i.e. sample provenance) and dating quality (i.e. sample material and method used). The weights of quality criteria may be adjusted based on the research focus, and resulting confidence levels may be used in further analyses to ensure robustness of conclusions. We apply the proposed approach to a case study of a (former) peat landscape in the northern Netherlands, aiming to reconstruct the timing of peat initiation spatially. Our search yielded 313 radiocarbon dates from the 1950s to 2019. Based on the quality assessment the dates—of highly diverse quality—were assigned to four confidence levels. Results indicate that peat initiation for the study area first peaked in the Late Glacial, dropped during the Boreal (10640 – 9220 cal y BP) and showed a second peak in the Subboreal (5660 – 2400 cal y BP). Further spatial analysis shows that for local valleys peat initiation occurred throughout the Holocene, with age-elevation plots indicating a prominent control by Holocene sea level rise. On plains and ridges peat initiation only occurred during the Subboreal, likely controlled by groundwater rise related to sea level rise. Our study highlights the potential of legacy data for palaeogeographic reconstructions, as it is cost-efficient and provides access to information no longer available in the field. However, data retrieval may be challenging and reuse of data requires that basic information on location, elevation, stratigraphy, sample and analysis details are documented irrespective of the original research aims.<br>
DOI: 10.4121/14406347
title: Data from: "Using legacy data to reconstruct the past? Rescue, rigor and reuse in peatland geochronology"

description: There is a growing interest for rescue and reuse of data from past studies (so-called legacy data). Data loss is alarming, especially where natural archives are under threat, such as peat deposits. Here we develop a workflow for reuse of legacy radiocarbon dates in peatland studies, including a rigorous quality assessment that can be tailored to specific research questions and study regions. A penalty score is assigned to each date based on criteria that consider taphonomic quality (i.e. sample provenance) and dating quality (i.e. sample material and method used). The weights of quality criteria may be adjusted based on the research focus, and resulting confidence levels may be used in further analyses to ensure robustness of conclusions. We apply the proposed approach to a case study of a (former) peat landscape in the northern Netherlands, aiming to reconstruct the timing of peat initiation spatially. Our search yielded 313 radiocarbon dates from the 1950s to 2019. Based on the quality assessment the dates—of highly diverse quality—were assigned to four confidence levels. Results indicate that peat initiation for the study area first peaked in the Late Glacial, dropped during the Boreal (10640 – 9220 cal y BP) and showed a second peak in the Subboreal (5660 – 2400 cal y BP). Further spatial analysis shows that for local valleys peat initiation occurred throughout the Holocene, with age-elevation plots indicating a prominent control by Holocene sea level rise. On plains and ridges peat initiation only occurred during the Subboreal, likely controlled by groundwater rise related to sea level rise. Our study highlights the potential of legacy data for palaeogeographic reconstructions, as it is cost-efficient and provides access to information no longer available in the field. However, data retrieval may be challenging and reuse of data requires that basic information on location, elevation, stratigraphy, sample and analysis details are documented irrespective of the original research aims.<br>
DOI: 10.4121/16615900.v1
title: Radar rainfall nowcasts for 1,533 events spread over 12 Dutch catchments

description: This repository contains the radar rainfall nowcasts for 1,533 rainfall events spread over 12 basins in the Netherlands, from Imhoff et al. (2020). The basins, a combination of freely draining catchments and polder areas, are: Aa, Beemster, Delfland, Dwarsdiep, Grote Waterleiding, Hupsel, Linde, Luntersebeek, Regge, Reusel, Rijnland and Roggelsebeek. More catchment information can be found in figure 1 in Imhoff et al. (2020). The nowcasts were run with the radar composite of the Royal Netherlands Meteorological Institute for the period 2008 – 2018. Subsequently, the nowcasts were clipped to the extent of one of the basins and saved. <br>The events were systematically selected as follows (see also section 2.2.2. in Imhoff et al., 2020): Per catchment and for each season, eight events were selected per event duration (1, 3, 6, and 24 hr). An event was defined as a period with one of the four aforementioned durations in which it does not have to rain continuously. Based on this description of an event duration, the highest rainfall sums per duration, basin, and season were ranked from high to low, and the eight events with the highest rainfall sum for that duration (basin and season) were selected. In the list, an event could not occur within the time span of a previously selected event with a higher rainfall sum. This ensures that there is no overlap in the chosen events, given the duration, basin and season. Hence, summed over all durations (4), seasons (4) and basins (12), this selection procedure leads to 4 × 4 × 12 × 8 = 1,536 events. Of these 1,536 events, 1,533 ran successfully and are thus available in this repository.<br> For every five-minute time step in each of the events (with durations from 1 to 24 hours), a nowcast was made with one of the following nowcasting algorithms from the open-source Rainymotion (v0.1 used) and pySTEPS (v0.2 used) libraries (Ayzel et al., 2019; Pulkkinen et al., 2019): Rainymotion Sparse (referred to as RM-S in the files and corresponding paper), Rainymotion DenseRotation (referred to as RM-DR), pySTEPS deterministic (PS-D) and pySTEPS probabilistic (PS-P) with 20 ensemble members. All nowcasts have a time step of 5 min and a forecast horizon of six hours. Hence, in total, over 940,000 separate 5-min forecasts can be analyzed per algorithm. More information regarding the nowcasting algorithms can be found in Imhoff et al. (2021), Ayzel et al. (2019) and Pulkkinen et al. (2019). <br>The nowcasts are saved as netCDF files in folders with the following structure: catchment name &gt; nowcasting algorithm (RMS, RMDR, PSD and PSP) &gt; the individual nowcasts. The filename indicates the issue time of the nowcast in UTC. The events and information about the rainfall sum during the event are present in a separate folder called events. In this folder, the structure is as follows: season &gt; duration &gt; basin. The csv-files provide information on the date of the event (the end time is given) and the catchment-averaged rainfall sum during the event.
DOI: 10.4121/16601114.v1
title: Expression data of genes related to capsaicin synthesis screened in PRJNA327797 BioProject

description: The CDS sequences of Capsicum Chinense genes related to capsaicin synthesis were searched in NCBI Capsicum Chinense genome, and the obtained sequences were screened from SRA data in PRJNA327797 BioProject, and then TPM of related genes were obtained
DOI: 10.4121/16601114
title: Expression data of genes related to capsaicin synthesis screened in PRJNA327797 BioProject

description: The CDS sequences of Capsicum Chinense genes related to capsaicin synthesis were searched in NCBI Capsicum Chinense genome, and the obtained sequences were screened from SRA data in PRJNA327797 BioProject, and then TPM of related genes were obtained
DOI: 10.4121/16685173
title: Data describes the role of social media in improving organizational performance of IT sector in Indian context

description: The data describes the impact of social media usage on organizational performance of IT sector in Indian context. The data collected from lower and middle level employees was analyzed using correlation and regression analysis and the results highlighted that social media and organizational performance are positively and significantly correlated. The findings also revealed that social media has a significant impact on organizational performance.
DOI: 10.4121/16601108.v1
title: Expression data of genes related to capsaicin synthesis screened in transcriptome measured by Zixin Zhang

description: In NCBI Capsicum Chinense Genome, CDS sequences of genes related to capsaicin synthesis were searched, and the obtained sequences were put into Pepper Genome Platform for Blast, using CDS files of CM334 as dataset. Then we get the ID of the gene with the highest homology.The geneID was taken into the transcriptome data measured by Zixin Zhang for screening, and the RPKM of related genes was obtained. -- Zixin Zhang transcriptome sequencing was earlier than <i>Capsicum Chinense </i>genome sequencing.<br>Zhang, ZX., Zhao, SN., Liu, GF. et al. Discovery of putative capsaicin biosynthetic genes by RNA-Seq and digital gene expression analysis of pepper. Sci Rep 6, 34121 (2016). https://doi.org/10.1038/srep34121<br>
DOI: 10.4121/16601108
title: Expression data of genes related to capsaicin synthesis screened in transcriptome measured by Zixin Zhang

description: In NCBI Capsicum Chinense Genome, CDS sequences of genes related to capsaicin synthesis were searched, and the obtained sequences were put into Pepper Genome Platform for Blast, using CDS files of CM334 as dataset. Then we get the ID of the gene with the highest homology.The geneID was taken into the transcriptome data measured by Zixin Zhang for screening, and the RPKM of related genes was obtained. -- Zixin Zhang transcriptome sequencing was earlier than <i>Capsicum Chinense </i>genome sequencing.<br>Zhang, ZX., Zhao, SN., Liu, GF. et al. Discovery of putative capsaicin biosynthetic genes by RNA-Seq and digital gene expression analysis of pepper. Sci Rep 6, 34121 (2016). https://doi.org/10.1038/srep34121<br>
DOI: 10.4121/12852113.v1
title: NIOZ racetrack sand-shell experiment, data belonging to the paper: Sediment shell-content diminishes current-driven sand ripple development and migration

description: Data collected from racetrack flume experiments conducted at NIOZ - Yerseke, the Netherlands. The experiment investigated the effect of shells within medium sand on ripple dynamics. Time-lapse photos, GoPro video footage and ADV measurements were taken from the two separate experiments: Constant flow experiment (6 treatments) and Acceleration (ACC; 11 treatments) flow experiment.
DOI: 10.4121/12852113
title: NIOZ racetrack sand-shell experiment, data belonging to the paper: Sediment shell-content diminishes current-driven sand ripple development and migration

description: Data collected from racetrack flume experiments conducted at NIOZ - Yerseke, the Netherlands. The experiment investigated the effect of shells within medium sand on ripple dynamics. Time-lapse photos, GoPro video footage and ADV measurements were taken from the two separate experiments: Constant flow experiment (6 treatments) and Acceleration (ACC; 11 treatments) flow experiment.
DOI: 10.4121/16601123.v1
title: Expression data of genes related to capsaicin synthesis screened in PRJNA331024 BioProject

description: The CDS sequences of genes related to Capsicum synthesis searched in NCBI Capsicum Chinense genome were screened from part of SRA data of PRJNA331024 BioProject, and then the TPM of related genes was obtained.
DOI: 10.4121/16601123
title: Expression data of genes related to capsaicin synthesis screened in PRJNA331024 BioProject

description: The CDS sequences of genes related to Capsicum synthesis searched in NCBI Capsicum Chinense genome were screened from part of SRA data of PRJNA331024 BioProject, and then the TPM of related genes was obtained.
DOI: 10.4121/16638319.v1
title: Instance data set for: An Auction-Based Multi-Agent System for the Pickup and Delivery Problem with Autonomous Vehicles and Alternative Locations

description: This data set contains 15 instances of the Generalized Pickup and Delivery Problem with Preferences, containing 500-2000 orders, used in the article An Auction-Based Multi-Agent System for the Pickup and Delivery Problem with Autonomous Vehicles and Alternative Locations by J. Los, F. Schulte, M.T.J. Spaan, and R.R. Negenborn.
DOI: 10.4121/16638319
title: Instance data set for: An Auction-Based Multi-Agent System for the Pickup and Delivery Problem with Autonomous Vehicles and Alternative Locations

description: This data set contains 15 instances of the Generalized Pickup and Delivery Problem with Preferences, containing 500-2000 orders, used in the article An Auction-Based Multi-Agent System for the Pickup and Delivery Problem with Autonomous Vehicles and Alternative Locations by J. Los, F. Schulte, M.T.J. Spaan, and R.R. Negenborn.
DOI: 10.4121/16638262.v1
title: Figure data for the dissertation "Solving Large-Scale Dynamic Collaborative Vehicle Routing Problems - An Auction-Based Multi-Agent Approach"

description: This data set contains the coordinates of the plots in the thesis "Solving Large-Scale Dynamic Collaborative Vehicle Routing Problems - An Auction-Based Multi-Agent Approach" by Johan Los. It represents the results of various computational experiments in collaborative vehicle routing that were conducted to investigate to what extent an auction-based multi-agent system can be applied to solve dynamic large-scale collaborative vehicle routing problems. The data set indicates, among others, the value of information sharing, the profits that can be obtained by cooperation under different circumstances, and the individual profits that can be obtained when strategic bidding is applied.
DOI: 10.4121/16638262
title: Figure data for the dissertation "Solving Large-Scale Dynamic Collaborative Vehicle Routing Problems - An Auction-Based Multi-Agent Approach"

description: This data set contains the coordinates of the plots in the thesis "Solving Large-Scale Dynamic Collaborative Vehicle Routing Problems - An Auction-Based Multi-Agent Approach" by Johan Los. It represents the results of various computational experiments in collaborative vehicle routing that were conducted to investigate to what extent an auction-based multi-agent system can be applied to solve dynamic large-scale collaborative vehicle routing problems. The data set indicates, among others, the value of information sharing, the profits that can be obtained by cooperation under different circumstances, and the individual profits that can be obtained when strategic bidding is applied.
DOI: 10.4121/16728925.v1
title: Replication data of "Maternal Education and Infants’ Health"

description: Replication data and codes of "Maternal Education and Infants’ Health". This paper explores the effect of mother's education on birth outcomes using the Minimum Dropout Age policies as instrument.
DOI: 10.4121/16728925
title: Replication data of "Maternal Education and Infants’ Health"

description: Replication data and codes of "Maternal Education and Infants’ Health". This paper explores the effect of mother's education on birth outcomes using the Minimum Dropout Age policies as instrument.
DOI: 10.4121/14790936.v1
title: Dataset and scripts for "Key bioturbator species within benthic communities determine sediment resuspension thresholds"

description: Dataset and scripts for "Key bioturbator species within benthic communities determine sediment resuspension thresholds"<br>The dataset contains the raw data from erodibility measurements in the Oscar flume, data on sediment properties, benthos data, and all scripts necessary to conduct the analyses presented in the paper. <br>The zipfile contains 3 folder with the data and a ReadMe explaining the contents.<br>OverviewTable.docx contains the basic data used for the analyses in table format.
DOI: 10.4121/14790936
title: Dataset and scripts for "Key bioturbator species within benthic communities determine sediment resuspension thresholds"

description: Dataset and scripts for "Key bioturbator species within benthic communities determine sediment resuspension thresholds"<br>The dataset contains the raw data from erodibility measurements in the Oscar flume, data on sediment properties, benthos data, and all scripts necessary to conduct the analyses presented in the paper. <br>The zipfile contains 3 folder with the data and a ReadMe explaining the contents.<br>OverviewTable.docx contains the basic data used for the analyses in table format.
DOI: 10.4121/16729888
title: Google Earth Engine files for groundwater recharge in Kumasi

description: Datasets for running Google Earth Engine (GEE) script to estimate groundwater recharge in Kumasi, Ghana. This uses a water-balance approach using satellite datasets to estimate water-balance components, ultimately groundwater recharge. The script has been created as part of the MSc thesis 'Sustainability of groundwater resources in Kumasi, Ghana', which can be found in the TU Delft education repository. <br><i>'README.txt'</i> contains the scripts and how to run them. Files attached here are required to run the groundwater recharge model for Kumasi.
DOI: 10.4121/13077797.v1
title: Supplementary materials for the paper: External Human-Machine Interfaces can be misleading: An examination of trust development and misuse in a CAVE-based pedestrian simulation environment.

description: Supplementary data for the paper: Kaleefathullah, A. A., Merat, N., Lee, Y. M., Eisma, Y. B., Madigan, R., Garcia, J., & De Winter, J. C. F. External Human-Machine Interfaces can be misleading: An examination of trust development and misuse in a CAVE-based pedestrian simulation environment. Human Factors.
DOI: 10.4121/13077797.v2
title: Supplementary materials for the paper: External Human-Machine Interfaces can be misleading: An examination of trust development and misuse in a CAVE-based pedestrian simulation environment.

description: Supplementary data for the paper: Kaleefathullah, A. A., Merat, N., Lee, Y. M., Eisma, Y. B., Madigan, R., Garcia, J., & De Winter, J. C. F. External Human-Machine Interfaces can be misleading: An examination of trust development and misuse in a CAVE-based pedestrian simulation environment. Human Factors.
DOI: 10.4121/13077797
title: Supplementary materials for the paper: External Human-Machine Interfaces can be misleading: An examination of trust development and misuse in a CAVE-based pedestrian simulation environment.

description: Supplementary data for the paper: Kaleefathullah, A. A., Merat, N., Lee, Y. M., Eisma, Y. B., Madigan, R., Garcia, J., & De Winter, J. C. F. External Human-Machine Interfaces can be misleading: An examination of trust development and misuse in a CAVE-based pedestrian simulation environment. Human Factors.
DOI: 10.4121/14994534.v1
title: Ceilometer and friction velocity observations from Cabauw

description: This data set contains netcdf files of observed and derived variables from the LD40 ceilometer, as well as the friction velocity (measured with a sonic anemometer). Both instruments are part of the Royal Dutch Meteorology Institute's (KNMI) Ruisdael observatory in Cabauw, The Netherlands. (Some may know this site under its previous name, the CESAR observatory.) These observations are used in the study "Surface-layer wind shear and momentum transport from clear-sky to cloudy weather regimes over land" by Koning et al., 2021. Other observational data used in this study can be found on the KNMI Data Platform: https://dataplatform.knmi.nl/dataset/.<br>1) Data from the LD40 ceilometer (2009-2017), grouped in a tar file per year: ld40_cabauw_[yyyy].tar<br>The tar files contain daily netcdf files of the ld40 backscatter, having a time interval of 15 seconds. File format: cesar_ld40_backscatter_la1_t15s_v1.0_[yyyymmdd].nc<br><br>2) Friction velocity data (2012-2017), 10-minute average, grouped together in one tar file. This data is extracted from the cesar_tower_flux2_lb1_t10_v1.1_[yyyymm].nc. This data only contains data during dry periods and is manually cleaned for these times. <br>
DOI: 10.4121/14994534
title: Ceilometer and friction velocity observations from Cabauw

description: This data set contains netcdf files of observed and derived variables from the LD40 ceilometer, as well as the friction velocity (measured with a sonic anemometer). Both instruments are part of the Royal Dutch Meteorology Institute's (KNMI) Ruisdael observatory in Cabauw, The Netherlands. (Some may know this site under its previous name, the CESAR observatory.) These observations are used in the study "Surface-layer wind shear and momentum transport from clear-sky to cloudy weather regimes over land" by Koning et al., 2021. Other observational data used in this study can be found on the KNMI Data Platform: https://dataplatform.knmi.nl/dataset/.<br>1) Data from the LD40 ceilometer (2009-2017), grouped in a tar file per year: ld40_cabauw_[yyyy].tar<br>The tar files contain daily netcdf files of the ld40 backscatter, having a time interval of 15 seconds. File format: cesar_ld40_backscatter_la1_t15s_v1.0_[yyyymmdd].nc<br><br>2) Friction velocity data (2012-2017), 10-minute average, grouped together in one tar file. This data is extracted from the cesar_tower_flux2_lb1_t10_v1.1_[yyyymm].nc. This data only contains data during dry periods and is manually cleaned for these times. <br>