cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/r4jtr4
title: Description of Crassolabium unicum sp. n. (Nematoda: Dorylaimida: Qudsianematidae) from Vietnam

description: This dataset contains the digitized treatments in Plazi based on the original journal article Nguyen, Thi Anh Duong, Peña-Santiago, Reyes (2021): Description of Crassolabium unicum sp. n. (Nematoda: Dorylaimida: Qudsianematidae) from Vietnam. Zootaxa 4970 (1): 189-194, DOI: https://doi.org/10.11646/zootaxa.4970.1.11
DOI: 10.6084/m9.figshare.14681040.v1
title: Table 3: laboratory and clinical response to ustekinumab

description: laboratory and clinical response to ustekinumab
DOI: 10.5281/zenodo.4650261
title: CovidPubGraph: A FAIR Knowledge Graph of COVID-19 Publications

description: The rapid generation of large amounts of information about the novel coronavirus SARS-CoV-2 and the disease COVID-19 makes it increasingly difficult to gain a comprehensive overview of current insights related to the disease. This holds especially for scientific research, where a growing number of publications provide insights that might support the development of a cure or better vaccines as well as the repurposing of medication. With this work, we aim to support the rapid access to a comprehensive data source on COVID-19 targeted especially at researchers. Our dataset, COVIDPUBGRAPH, an RDF knowledge graph of scientific publications, abides by the Linked Data and FAIR principles. The base dataset for the extraction isCORD-19, a dataset of COVID-19-related publications, which is updated regularly. Consequently, COVIDPUBGRAPH is updated once in two weeks. Our generation pipeline applies named entity recognition, entity linking and link discovery approaches to the original data. The current version of the resulting dataset contains 202,770,925 triples and is linked to 9 other datasets by over 1 million links. In our use case studies, we demonstrate the usefulness of our knowledge graph for different applications. COVIDPUBGRAPH can be accessed as an RDF dump, a SPARQL endpoint, and via an HTML endpoint. All data we generated is available under the Creative Commons Attribution 4.0 International license. The software developed for the extraction is available under the GPL 3.0 license.
DOI: 10.5281/zenodo.4650260
title: CovidPubGraph: A FAIR Knowledge Graph of COVID-19 Publications

description: The rapid generation of large amounts of information about the novel coronavirus SARS-CoV-2 and the disease COVID-19 makes it increasingly difficult to gain a comprehensive overview of current insights related to the disease. This holds especially for scientific research, where a growing number of publications provide insights that might support the development of a cure or better vaccines as well as the repurposing of medication. With this work, we aim to support the rapid access to a comprehensive data source on COVID-19 targeted especially at researchers. Our dataset, COVIDPUBGRAPH, an RDF knowledge graph of scientific publications, abides by the Linked Data and FAIR principles. The base dataset for the extraction isCORD-19, a dataset of COVID-19-related publications, which is updated regularly. Consequently, COVIDPUBGRAPH is updated once in two weeks. Our generation pipeline applies named entity recognition, entity linking and link discovery approaches to the original data. The current version of the resulting dataset contains 202,770,925 triples and is linked to 9 other datasets by over 1 million links. In our use case studies, we demonstrate the usefulness of our knowledge graph for different applications. COVIDPUBGRAPH can be accessed as an RDF dump, a SPARQL endpoint, and via an HTML endpoint. All data we generated is available under the Creative Commons Attribution 4.0 International license. The software developed for the extraction is available under the GPL 3.0 license.
DOI: 10.5281/zenodo.4776903
title: Repaired Errors caused by Privacy Badger

description: A set of web pages with Javascript errors caused by using the privacy browser extension Privacy Badger, and repaired using BikiniProxy.
DOI: 10.5281/zenodo.4776902
title: Repaired Errors caused by Privacy Badger

description: A set of web pages with Javascript errors caused by using the privacy browser extension Privacy Badger, and repaired using BikiniProxy.
DOI: 10.5281/zenodo.242498
title: Aerodynamics code used in Wind Energy Science paper "Comparison of a coupled near- and far-wake model with a free-wake vortex code"

description: This research code has been developed from the start of my PhD as a first step before the HAWC2 implementation of the near wake model. It can be used to make aerodynamic computations of a stiff wind turbine rotor, and it includes A BEM and far wake model implementation based on the one in HAWC2 An attached flow unsteady airfoil aerodynamics model including the modifications described in the WES article Most importantly a near wake model implementation including all major modifications except the recent stand still extension presented at TORQUE 2016 All the data files need to be in a subfolder 'NREL_5MW' located in the same folder as the compiled source code. With the present (hardcoded) settings, the program will simulate the NREL 5 MW reference turbine for 650 seconds, with blade vibrations according to different prescribed mode shapes after steady state is reached. The aerodynamics model is a coupled near and far wake model. The integrated aerodynamic work during 1 period of the different prescribed vibrations will be output in the file 'aerowork.out' . The NREL 5 MW turbine is described in: Jonkman, J., Butterfield, S., Musial,W., and Scott, G.: Definition of a 5-MW Reference Wind Turbine for Offshore System Development, National Renewable Energy Laboratory, 2009.
DOI: 10.5517/ccdc.csd.cc23r513
title: CCDC 1958674: Experimental Crystal Structure Determination

description: Related Article: Jing Zhang, Rong-Da Lai, Yan-Lan Wu, Zeng-Kui Zhu, Yan-Qiong Sun, Qing-Xin Zeng, Xin-Xiong Li, Shou-Tian Zheng|2020|Chem.Asian J.|15|1574|doi:10.1002/asia.202000294
DOI: 10.5517/ccdc.csd.cc23r524
title: CCDC 1958675: Experimental Crystal Structure Determination

description: Related Article: Jing Zhang, Rong-Da Lai, Yan-Lan Wu, Zeng-Kui Zhu, Yan-Qiong Sun, Qing-Xin Zeng, Xin-Xiong Li, Shou-Tian Zheng|2020|Chem.Asian J.|15|1574|doi:10.1002/asia.202000294
DOI: 10.5517/ccdc.csd.cc25sj7r
title: CCDC 2019564: Experimental Crystal Structure Determination

description: Related Article: Xing‐Lan Wang, Xue Bai, Chun‐Feng Wu, Yong‐Xi Dong, Min Zhang, Ling‐Ling Fan, Lei Tang, Yuan‐Yong Yang, Ji‐Quan Zhang|2021|Asian J.Org.Chem|10|386|doi:10.1002/ajoc.202000668
DOI: 10.5517/ccdc.csd.cc25sj8s
title: CCDC 2019565: Experimental Crystal Structure Determination

description: Related Article: Xing‐Lan Wang, Xue Bai, Chun‐Feng Wu, Yong‐Xi Dong, Min Zhang, Ling‐Ling Fan, Lei Tang, Yuan‐Yong Yang, Ji‐Quan Zhang|2021|Asian J.Org.Chem|10|386|doi:10.1002/ajoc.202000668
DOI: 10.7284/141897
title: GNSS (Global Navigation Satellite System) data collected during research cruise NBP1406 using a Furuno GP-330B instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141898
title: Gyrocompass data collected during research cruise NBP1406 using a Yokogawa CMZ700B instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141886
title: INS (Inertial Navigation System) data collected during research cruise NBP1406 using a Kongsberg Seapath 200 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141896
title: INS (Inertial Navigation System) data collected during research cruise NBP1406 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.15468/qrs99k
title: Endogean and Cavernicolous Coleoptera of the Balkans. XXIII. A new species of Paramaurops J. Müller (Coleoptera: Staphylinidae: Pselaphinae) from Greece

description: This dataset contains the digitized treatments in Plazi based on the original journal article Hlaváč, Peter, Baňař, Petr, Davranoglou, Leonidas-Romanos, Kempton, James (2021): Endogean and Cavernicolous Coleoptera of the Balkans. XXIII. A new species of Paramaurops J. Müller (Coleoptera: Staphylinidae: Pselaphinae) from Greece. Zootaxa 4970 (1): 195-200, DOI: https://doi.org/10.11646/zootaxa.4970.1.12
DOI: 10.25345/c5j52z
title: MassIVE MSV000087525 - MAGEL2- Full length and truncation Interactome
title: BioID analysis of full length and truncated MAGEL2 PMAGEL2-1 BioID results for wildtype C-terminal MAGEL2 protein (replicate 1) PMAGEL2-2 BioID results for wildtype C-terminal MAGEL2 protein (replicate 2) PMAGEL2-3 BioID results for wildtype C-terminal MAGEL2 protein (replicate 3) PMAGEL2-4 BioID results for wildtype C-terminal MAGEL2 protein (replicate 4) PMAGEL2-5 BioID results for wildtype C-terminal MAGEL2 protein (replicate 5) PMAGEL2-6 BioID results for wildtype C-terminal MAGEL2 protein (replicate 6) MAGEL2-1 BioID results for wildtype MAGEL2 protein (replicate 1) MAGEL2-2 BioID results for wildtype MAGEL2 protein (replicate 2) MAGEL2-3 BioID results for wildtype MAGEL2 protein (replicate 3) LLAA-1 BioID results for mutant C-terminal MAGEL2 protein (p.VL1031AA, c.[ C1281CG;T1282C;C1284G;T1285C]) (replicate 1) LLAA-2 BioID results for mutant C-terminal MAGEL2 protein (p.VL1031AA, c.[ C1281CG;T1282C;C1284G;T1285C]) (replicate 2) LLAA-3 BioID results for mutant C-terminal MAGEL2 protein (p.VL1031AA, c.[ C1281CG;T1282C;C1284G;T1285C]) (replicate 3) RSC-1 BioID results for mutant C-terminal MAGEL2 protein (p.R1187C, c.[ C1750T;A1752T]) (replicate 1) RSC-2 BioID results for mutant C-terminal MAGEL2 protein (p.R1187C, c.[ C1750T;A1752T]) (replicate 2) RSC-3 BioID results for mutant C-terminal MAGEL2 protein (p.R1187C, c.[ C1750T;A1752T]) (replicate 3)
DOI: 10.15482/usda.adc/1503868
title: Long-Term Agricultural Research (LTAR) network - Meteorological Collection
DOI: 10.6084/m9.figshare.6741614
title: Instances and Code of the article "Heuristic based on mathematical programming for a lot-sizing and scheduling problem in mold-injection production"

description: Instances set and code (needs Gurobi) for the article "Heuristic based on mathematical programming for a lot-sizing and scheduling problem in mold-injection production"
DOI: 10.6084/m9.figshare.6741614.v2
title: Instances and Code of the article "Heuristic based on mathematical programming for a lot-sizing and scheduling problem in mold-injection production"

description: Instances set and code (needs Gurobi) for the article "Heuristic based on mathematical programming for a lot-sizing and scheduling problem in mold-injection production"
DOI: 10.6084/m9.figshare.6741614.v1
title: Instances of the article "Heuristic based on mathematical programming for a lot-sizing and scheduling problem in mold-injection production"

description: Instances set for the article "Heuristic based on mathematical programming for a lot-sizing and scheduling problem in mold-injection production"
DOI: 10.3886/e130765
title: Data and Code for: Discrete Choice under Risk with Limited Consideration

description: This paper is concerned with learning decision makers' preferences using data on observed choices from a finite set of risky alternatives. We propose a discrete choice model with unobserved heterogeneity in consideration sets and in standard risk aversion. We obtain sufficient conditions for the model's semi-nonparametric point identification, including in cases where consideration depends on preferences and on some of the exogenous variables. Our method yields an estimator that is easy to compute and is applicable in markets with large choice sets. We illustrate its properties using a dataset on property insurance purchases.
description: Data come from a U.S. insurance company.
DOI: 10.5281/zenodo.4813727
title: Dataset De Argumentenfabriek in English

description: This dataset contains the argument graphs of <em>De Argumentenfabriek</em> [1], originally created as PDF files in Dutch. The dataset refers to the paper "<em>Fine and Coarse Granular Argument Classification before Clustering</em>" and contains 365 graphs with more than 11,000 arguments, which were manually converted into a CSV and translated into English using DeepL [2] in order to be able to reconstruct their stances, frames, and clusterings.<br> Moreover, there is also a concentrated dataset consisting of 49 graphs comprising 2,186 arguments, which was used in the evaluation of the paper. Two further files contain the unified stance and frame labels of the arguments.<br> <br> [1]: https://www.argumentenfabriek.nl/<br> [2]: https://www.deepl.com/
DOI: 10.3886/e130765v1
title: Data and Code for: Discrete Choice under Risk with Limited Consideration

description: This paper is concerned with learning decision makers' preferences using data on observed choices from a finite set of risky alternatives. We propose a discrete choice model with unobserved heterogeneity in consideration sets and in standard risk aversion. We obtain sufficient conditions for the model's semi-nonparametric point identification, including in cases where consideration depends on preferences and on some of the exogenous variables. Our method yields an estimator that is easy to compute and is applicable in markets with large choice sets. We illustrate its properties using a dataset on property insurance purchases.
description: Data come from a U.S. insurance company.
DOI: 10.5281/zenodo.4813726
title: Dataset De Argumentenfabriek in English

description: This dataset contains the argument graphs of <em>De Argumentenfabriek</em> [1], originally created as PDF files in Dutch. The dataset refers to the paper "<em>Fine and Coarse Granular Argument Classification before Clustering</em>" and contains 365 graphs with more than 11,000 arguments, which were manually converted into a CSV and translated into English using DeepL [2] in order to be able to reconstruct their stances, frames, and clusterings.<br> Moreover, there is also a concentrated dataset consisting of 49 graphs comprising 2,186 arguments, which was used in the evaluation of the paper. Two further files contain the unified stance and frame labels of the arguments.<br> <br> [1]: https://www.argumentenfabriek.nl/<br> [2]: https://www.deepl.com/
DOI: 10.15468/5dgspm
title: Morphology of pupae of Synanthedon codeti (Oberthür, 1881) and Synanthedon theryi Le Cerf, 1916 (Lepidoptera: Sesiidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bąkowski, Marek (2021): Morphology of pupae of Synanthedon codeti (Oberthür, 1881) and Synanthedon theryi Le Cerf, 1916 (Lepidoptera: Sesiidae). Zootaxa 4969 (1): 175-182, DOI: https://doi.org/10.11646/zootaxa.4969.1.10
DOI: 10.6084/m9.figshare.13029039.v4
title: Genomic epidemiology of emerging ESBL-producing <i>Salmonella</i> Kentucky <i>bla</i><sub>CTX-M-14b</sub> in Europe

description: Global dissemination of ciprofloxacin-resistant <i>Salmonella</i> Kentucky has been observed over the past decades. In recent years, there have been reports of extended-spectrum β-lactamase (ESBL) producing <i>S</i>. Kentucky. Routine surveillance at the European Centre for Disease Prevention and Control (ECDC) detected cases with a ciprofloxacin-resistant <i>S</i>. Kentucky with the ESBL-gene <i>bla</i><sub>CTX-M-14b</sub>. Ensuing research identified 78 cases in 2013–2018 in eight European countries. Compared to other <i>S</i>. Kentucky and non-typhoidal <i>Salmonella</i> infections, reported to the European Surveillance System, these cases were more likely to be elderly and to present urinary-tract infections. Bayesian time-scaled phylogeny on whole genome sequences of isolates from these cases and supplementary isolates from public sequence databases was used to infer the origin and spread of this clone. We dated the origin of the <i>bla</i><sub>CTX-M-14b</sub> clone to approximately 2005 in Northern Africa, most likely in Egypt. The geographic origin predicted by the phylogenetic analysis is consistent with the patients’ travel history. Next to multiple introductions of the clone to Europe from Egypt, our analysis suggests that in some parts of Europe the clone might have formed a stable population, from which further spread has occurred. Comparative genomics indicated that the <i>bla</i><sub>CTX-M-14b</sub> gene is present on the bacterial chromosome, within the type VI secretion system region. The <i>bla</i><sub>CTX-M-14b</sub> gene is integrated downstream of the <i>hcp1</i> gene, on a 2854 bp plasmid fragment containing also IS<i>Ecp1</i>. This is the first report of a chromosomally integrated CTX-M gene in <i>Salmonella</i> spp. in Europe, previous studies having identified similar genes only on plasmids.
DOI: 10.3886/e127401
title: Data and code for: The Selection of Talent: Experimental and Structural Evidence from Ethiopia

description: We study how search frictions in the labour market affect firms' ability to recruit talented workers. In a field experiment in Ethiopia, we show that an employer can attract more talented applicants by offering a small monetary incentive for making a job application. Estimates from a structural model suggest that the intervention is effective because the cost of making a job application is large, and positively correlated with jobseeker ability. We provide evidence that this positive correlation is driven by dynamic selection. In a second experiment, we show that local recruiters underestimate the positive impacts of application incentives.
DOI: 10.17043/coxall-2021-java-1
title: Eocene-Oligocene age planktonic and benthic foraminifera oxygen and carbon stable isotopes from the NKK-1 borehole, central Java
DOI: 10.5281/zenodo.4813833
title: Contrasting regional variability of buried meltwater extent over two years across the Greenland Ice Sheet - data

description: Data used in our paper "Contrasting regional variability of buried meltwater extent over two years across the Greenland Ice Sheet". This dataset includes all training, validation and testing images used for the convolutional neural network described in our paper (CNN_data.zip), shapefiles for all detected buried and surface lakes (lakes.zip), and our convolutional neural network model (CNN_model.zip).
DOI: 10.5281/zenodo.4813832
title: Contrasting regional variability of buried meltwater extent over two years across the Greenland Ice Sheet - data

description: Data used in our paper "Contrasting regional variability of buried meltwater extent over two years across the Greenland Ice Sheet". This dataset includes all training, validation and testing images used for the convolutional neural network described in our paper (CNN_data.zip), shapefiles for all detected buried and surface lakes (lakes.zip), and our convolutional neural network model (CNN_model.zip).
DOI: 10.5281/zenodo.3984822
title: Depressurization of CO2-N2 and CO2-He in a pipe: Experiments and modelling of pressure and temperature dynamics – dataset

description: This dataset contains data from depressurization of two CO<sub>2</sub> mixtures in a tube from a gaseous and a dense-liquid state. The data are described in the accompanying paper (DOI: 10.1016/j.ijggc.2021.103361). The initial state is 12 MPa and 25 degrees C. Mixture 1: CO<sub>2</sub> with 1.8 mol % N<sub>2</sub> (Experiment 9). Mixture 2: CO<sub>2</sub> with 1.92 % He (Experiment 12).<br>
DOI: 10.5281/zenodo.3984821
title: Depressurization of CO2-N2 and CO2-He in a pipe: Experiments and modelling of pressure and temperature dynamics – dataset

description: This dataset contains data from depressurization of two CO<sub>2</sub> mixtures in a tube from a gaseous and a dense-liquid state. The data are described in the accompanying paper (DOI: 10.1016/j.ijggc.2021.103361). The initial state is 12 MPa and 25 degrees C. Mixture 1: CO<sub>2</sub> with 1.8 mol % N<sub>2</sub> (Experiment 9). Mixture 2: CO<sub>2</sub> with 1.92 % He (Experiment 12).<br>
DOI: 10.15468/2dth6x
title: A catalog of the Lampyridae (Coleoptera) of the West Indies

description: This dataset contains the digitized treatments in Plazi based on the original journal article Keller, Oliver, Branham, Marc A. (2021): A catalog of the Lampyridae (Coleoptera) of the West Indies. Zootaxa 4970 (1): 53-105, DOI: https://doi.org/10.11646/zootaxa.4970.1.2
DOI: 10.6084/m9.figshare.13029039.v5
title: Genomic epidemiology of emerging ESBL-producing <i>Salmonella</i> Kentucky <i>bla</i> <sub>CTX-M-14b</sub> in Europe

description: Global dissemination of ciprofloxacin-resistant <i>Salmonella</i> Kentucky has been observed over the past decades. In recent years, there have been reports of extended-spectrum β-lactamase (ESBL) producing <i>S</i>. Kentucky. Routine surveillance at the European Centre for Disease Prevention and Control (ECDC) detected cases with a ciprofloxacin-resistant <i>S</i>. Kentucky with the ESBL-gene <i>bla</i> <sub>CTX-M-14b</sub>. Ensuing research identified 78 cases in 2013–2018 in eight European countries. Compared to other <i>S</i>. Kentucky and non-typhoidal <i>Salmonella</i> infections, reported to the European Surveillance System, these cases were more likely to be elderly and to present urinary-tract infections. Bayesian time-scaled phylogeny on whole genome sequences of isolates from these cases and supplementary isolates from public sequence databases was used to infer the origin and spread of this clone. We dated the origin of the <i>bla</i> <sub>CTX-M-14b</sub> clone to approximately 2005 in Northern Africa, most likely in Egypt. The geographic origin predicted by the phylogenetic analysis is consistent with the patients’ travel history. Next to multiple introductions of the clone to Europe from Egypt, our analysis suggests that in some parts of Europe the clone might have formed a stable population, from which further spread has occurred. Comparative genomics indicated that the <i>bla</i> <sub>CTX-M-14b</sub> gene is present on the bacterial chromosome, within the type VI secretion system region. The <i>bla</i> <sub>CTX-M-14b</sub> gene is integrated downstream of the <i>hcp1</i> gene, on a 2854 bp plasmid fragment containing also IS<i>Ecp1</i>. This is the first report of a chromosomally integrated CTX-M gene in <i>Salmonella</i> spp. in Europe, previous studies having identified similar genes only on plasmids.
DOI: 10.5281/zenodo.4754341
title: LC-MS raw data for M. smegmatis knockdown strains and controls

description: This dataset contains LC-MS raw data for M. smegmatis knockdown strains and corresponding controls. The descriptions of the raw data files are in Table-MS-RawData.pdf.
DOI: 10.5281/zenodo.4754340
title: LC-MS raw data for M. smegmatis knockdown strains and controls

description: This dataset contains LC-MS raw data for M. smegmatis knockdown strains and corresponding controls. The descriptions of the raw data files are in Table-MS-RawData.pdf.
DOI: 10.15468/qez23x
title: On the exact position of the tribe Incolacridini in the modern classification of grasshoppers (Orthoptera: Acrididae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Storozhenko, Sergey Yu. (2021): On the exact position of the tribe Incolacridini in the modern classification of grasshoppers (Orthoptera: Acrididae). Zootaxa 4970 (1): 106-118, DOI: https://doi.org/10.11646/zootaxa.4970.1.3
DOI: 10.5281/zenodo.4813994
title: Differences between Behavior and Maturation: Developmental Effects of Father Absence

description: Dataset for published paper (doi: 10.1007/s40750-021-00166-4)
DOI: 10.5281/zenodo.4813993
title: Differences between Behavior and Maturation: Developmental Effects of Father Absence

description: Dataset for published paper (doi: 10.1007/s40750-021-00166-4)