cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7761368
title: Human STING is a proton channel (Live-cell MGAT, GALT, and LAMP1 pH Measurements Upon BafA1 and diABZI treatment)

description: hTERT-immortalized BJ1 cells (ATCC CRL-2522) were transduced with lentiviral ratiometric reporters targeted to MGAT, GALT, or LAMP1 constructed based on designs reported in Linders et al. <em>ACS Chem. Biol. </em>2022, with superecliptic pHluorin and mRuby3. Transduced cells were sorted based on mRuby3 expression using a Sony MA900 sorter. BJ1 SEP-mRuby3 cells were plated in 24-well glass-bottom plates (Greiner Bio-One) at 40,000 cells/well. After 48 hours, cells were stained for 45 minutes at 37°C with 0.5 µg/ml Hoechst 34580 (Thermo Fisher Scientific, cat. #H21486). Cells were then washed and incubated in Fluorobrite DMEM (Thermo Fisher Scientific, cat. #A1896701) medium supplemented with 10% FBS, 1% Pen-strep, and 1x GlutaMAX (Thermo Fisher Scientific, cat. #35050061). For time-course experiments, cells were stimulated with 1 µM Bafilomycin A1 (Santa Cruz Biotechnology cat. #sc-201550), or 1 µM diABZI (Invivogen, #tlrl-diabzi). All images were acquired using a Ti2-E inverted epifluorescence microscope (Nikon) with automated XYZ stage control, hardware autofocus, and a Yokogawa CSU-W1 confocal spinning disk unit with Zyla 4.2 PLUS sCMOS camera. An Okolab cage incubator was set to 37°C with 5% CO2. 405, 488, 561, and 640 nm laser lines were used for fluorescence illumination and all hardware was controlled using NIS elements software. Images were acquired using a 40X 0.95 NA CFI Plan Apo λ objective (Nikon MRD70470) with the following lasers and filters: Hoechst (405 nm laser, Chroma Multi LED set #89401), superecliptic pHluorin (488 nm laser, Chroma Multi LED set #89401), and mRuby3 (561 nm laser, Chroma Multi LED set #89401), assaying three z planes per field of view with 1.25 µm spacing. Fields of view were selected using NIS Elements software coordinates without manual preselection. Images are maximum projections of multiple z-stacks with each frame representing one timepoint: 0, 10, 20, 30, 40, 50, 60 minutes post treatment (except for replicate 1, which omitted the final timepoint). Channels are: Hoechst 34580, SEP (super-ecliptic pHluorin), mRuby3, and SEP/mRuby3 (ratio). Crops indicate cropped fields of view presented in the manuscript.
DOI: 10.5281/zenodo.7761367
title: Human STING is a proton channel (Live-cell MGAT, GALT, and LAMP1 pH Measurements Upon BafA1 and diABZI treatment)

description: hTERT-immortalized BJ1 cells (ATCC CRL-2522) were transduced with lentiviral ratiometric reporters targeted to MGAT, GALT, or LAMP1 constructed based on designs reported in Linders et al. <em>ACS Chem. Biol. </em>2022, with superecliptic pHluorin and mRuby3. Transduced cells were sorted based on mRuby3 expression using a Sony MA900 sorter. BJ1 SEP-mRuby3 cells were plated in 24-well glass-bottom plates (Greiner Bio-One) at 40,000 cells/well. After 48 hours, cells were stained for 45 minutes at 37°C with 0.5 µg/ml Hoechst 34580 (Thermo Fisher Scientific, cat. #H21486). Cells were then washed and incubated in Fluorobrite DMEM (Thermo Fisher Scientific, cat. #A1896701) medium supplemented with 10% FBS, 1% Pen-strep, and 1x GlutaMAX (Thermo Fisher Scientific, cat. #35050061). For time-course experiments, cells were stimulated with 1 µM Bafilomycin A1 (Santa Cruz Biotechnology cat. #sc-201550), or 1 µM diABZI (Invivogen, #tlrl-diabzi). All images were acquired using a Ti2-E inverted epifluorescence microscope (Nikon) with automated XYZ stage control, hardware autofocus, and a Yokogawa CSU-W1 confocal spinning disk unit with Zyla 4.2 PLUS sCMOS camera. An Okolab cage incubator was set to 37°C with 5% CO2. 405, 488, 561, and 640 nm laser lines were used for fluorescence illumination and all hardware was controlled using NIS elements software. Images were acquired using a 40X 0.95 NA CFI Plan Apo λ objective (Nikon MRD70470) with the following lasers and filters: Hoechst (405 nm laser, Chroma Multi LED set #89401), superecliptic pHluorin (488 nm laser, Chroma Multi LED set #89401), and mRuby3 (561 nm laser, Chroma Multi LED set #89401), assaying three z planes per field of view with 1.25 µm spacing. Fields of view were selected using NIS Elements software coordinates without manual preselection. Images are maximum projections of multiple z-stacks with each frame representing one timepoint: 0, 10, 20, 30, 40, 50, 60 minutes post treatment (except for replicate 1, which omitted the final timepoint). Channels are: Hoechst 34580, SEP (super-ecliptic pHluorin), mRuby3, and SEP/mRuby3 (ratio). Crops indicate cropped fields of view presented in the manuscript.
DOI: 10.6084/m9.figshare.22819511
title: CONUS_Variables_HUC12.zip

description: HUC12 based hydrological variables on CONUS
DOI: 10.5281/zenodo.7937721
title: Extract from the glazed tile heritage database of Covilhã-Portugal (12 elements)

description: Extract from the tile heritage database of Covilhã - Portugal: geographic and alphanumeric data of 12 buildings with facades fully or partially covered with tiles, of heritage interest (registered in the SIPA), located in the municipality of Covilhã. The information is related to the buildings and tile compositions on its facades. Building data Building location: country, region, district, municipality, parish, street and house number, Lon WGS84, Lat WGS84, X ETRS89, Y ETRS89, Z elevation. SIPA: designation, identification number, link to SIPA data. Building identification: if it does not exist, an ID must be assigned. Protection and conditioning: world heritage, built heritage, benefits from a protection zone, in the process of classification, in study, non-existent. Public interest, national monument, municipal interest. Property type: public, private. Ownership: ownership information. Case number at municipal services: number ID. Typology: residence, industrial, commercial, religious, panel or other. Occupation: property occupation. Architectural style: dominant, secondary. Other decorative elements than tiles: if existing. General building condition (exterior): good, reasonable, bad, doom. Interventions chronology: if existing. Main moments of design, application, conservation, remodeling, restoration, and management. Bibliography, drawings and documents: source, link. Pictures: images. Glazed tile data Tile location: facade, inside building. Tile identification: ID number. Construction period: main construction periods. Local context: brief description of the glazed tile object surroundings, in its geophysical, historical, and socio-cultural aspects. Classification 1: coating, ceramic panel, toponymical plate or other. Classification 2: facade, patio, external staircase, balcony, wall, wall panel, small religious panel, caption. Classification 3: pattern, repeat composition, figurative, ornamental, or loose figure. Iconography: religion, biblical, magic, mysticism, nature, human being – humanity, society - civilization – culture, history, ancient history, literature, classical mythology, abstract ideas and concepts, abstract - non-figurative art. Monochrome or polychromatic: monochrome, polychromatic. Objective and succinct tile description: From general to particular: building, space, glazed tile, and section. Material (ceramic product): faience, stone dust, stoneware, porcelain, terracotta. Tile decoration technique: information on tile manufacture, divided into conformation, decoration and application. Composition dimensions: height x width (meters). Tile dimensions: height x width (centimetres). Tile condition: good, reasonable, bad. Authorship: company, artist, painter or other. Authorship nationality: country. Interventions chronology: if existing. Main moments of design, application, conservation, remodelling, restoration, and management. Bibliography, drawings and documents: source, link. Pictures: images.
DOI: 10.25921/fqp4-1h70
title: EK60 Water Column Sonar Data Collected During NF1908
DOI: 10.5281/zenodo.7937820
title: Datasets and codes for the peer review article "Human and natural impacts on the U.S. freshwater salinization and alkalinization: A machine learning approach"

description: Ongoing salinization and alkalinization in U.S. rivers have been attributed to inputs of road salt and effects of human-accelerated weathering in previous studies. Salinization poses a severe threat to human and ecosystem health, while human derived alkalinization implies increasing uncertainty in the dynamics of terrestrial sequestration of atmospheric carbon dioxide. A mechanistic understanding of whether and how human activities accelerate weathering and contribute to the geochemical changes in U.S. rivers is lacking. To address this uncertainty, we compiled dissolved sodium (salinity proxy) and alkalinity values along with 32 watershed properties ranging from hydrology, climate, geomorphology, geology, soil chemistry, land use, and land cover for 226 river monitoring sites across the coterminous U.S. Using these data, we built two machine-learning models to predict monthly-aggregated sodium and alkalinity fluxes at these sites. The sodium-prediction model detected human activities (represented by population density and impervious surface area) as major contributors to the salinity of U.S. rivers. In contrast, the alkalinity-prediction model identified natural processes as predominantly contributing to variation in riverine alkalinity flux, including runoff, carbonate sediment or siliciclastic sediment, soil pH and soil moisture. Unlike prior studies, our analysis suggests that the alkalinization in U.S. rivers is largely governed by local climatic and hydrogeological conditions.
DOI: 10.5281/zenodo.7937819
title: Datasets and codes for the peer review article "Human and natural impacts on the U.S. freshwater salinization and alkalinization: A machine learning approach"

description: Ongoing salinization and alkalinization in U.S. rivers have been attributed to inputs of road salt and effects of human-accelerated weathering in previous studies. Salinization poses a severe threat to human and ecosystem health, while human derived alkalinization implies increasing uncertainty in the dynamics of terrestrial sequestration of atmospheric carbon dioxide. A mechanistic understanding of whether and how human activities accelerate weathering and contribute to the geochemical changes in U.S. rivers is lacking. To address this uncertainty, we compiled dissolved sodium (salinity proxy) and alkalinity values along with 32 watershed properties ranging from hydrology, climate, geomorphology, geology, soil chemistry, land use, and land cover for 226 river monitoring sites across the coterminous U.S. Using these data, we built two machine-learning models to predict monthly-aggregated sodium and alkalinity fluxes at these sites. The sodium-prediction model detected human activities (represented by population density and impervious surface area) as major contributors to the salinity of U.S. rivers. In contrast, the alkalinity-prediction model identified natural processes as predominantly contributing to variation in riverine alkalinity flux, including runoff, carbonate sediment or siliciclastic sediment, soil pH and soil moisture. Unlike prior studies, our analysis suggests that the alkalinization in U.S. rivers is largely governed by local climatic and hydrogeological conditions.
DOI: 10.22003/xfel.eu-data-003455-00
title: Diamond high-precision X-ray polarimeter for the detection of vacuum birefringence
DOI: 10.5281/zenodo.7938842
title: Tailored machine learning for evaluating the long-term diabetes risk in older individuals: Findings from The Irish Longitudinal Study on Ageing (TILDA)

description: The original data for "Tailored machine learning for evaluating the long-term diabetes risk in older individuals: Findings from The Irish Longitudinal Study on Ageing (TILDA)" that published in BMJ Open.
DOI: 10.5281/zenodo.7938841
title: Tailored machine learning for evaluating the long-term diabetes risk in older individuals: Findings from The Irish Longitudinal Study on Ageing (TILDA)

description: The original data for "Tailored machine learning for evaluating the long-term diabetes risk in older individuals: Findings from The Irish Longitudinal Study on Ageing (TILDA)" that published in BMJ Open.
DOI: 10.25921/2yjb-7d86
title: EK60 Water Column Sonar Data Collected During NF2205
DOI: 10.6084/m9.figshare.3761562.v2587
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.13020/7n3e-yp45
title: Data in support of Quantifying the effectiveness of three aquatic invasive species prevention methods

description: Efforts to prevent the spread of aquatic invasive species (AIS) have been widely implemented at many scales to mitigate economic and environmental harms. Boater education, watercraft inspection, and hot water decontamination are popular strategies for prevention of AIS moving through the recreational boating pathway. However, few studies have actually quantified the effectiveness of these strategies under field conditions. We estimated their effectiveness based on the performances of boaters, watercraft inspectors, and hot water decontaminators. Participants (n=144) were recruited at 56 public water access sites in Minnesota and 1 in Wisconsin. Each participant was asked to inspect and remove AIS from a boat staged with macrophytes, dead zebra mussels, and spiny water fleas. The types and amounts of AIS removed were used to estimate the effectiveness of each prevention method. We observed that removal varied by type of AIS, with macrophytes being most commonly removed for all participants. There were also regional (metro and outstate) differences for some species perhaps due to awareness and education. Hot water decontamination was the most effective (83.7%) intervention but was not significantly better at reducing risk of spread than was watercraft inspection (79.2%). Boaters were less effective at AIS removal (56.4%). Our results suggest that watercraft inspection is an effective prevention method for most boats, and that hot water decontamination is an important tool for high-risk boats. However, robust decontamination protocols are difficult to effectively execute. Furthermore, our results provide insights into how to increase boater awareness of often-overlooked locations and help reduce risk when inspectors cannot be present at a public water access site.
description: -Data files including raw data, supplementary figures and tables, qualitative survey responses, code used -Blank evaluation and recruitment forms including scripts, consent forms, survey questions, and assessment forms
DOI: 10.6084/m9.figshare.22010876
title: Source data for Azucenas CR, Ruwe TA, Bonamer JP, Qiao B, Ganz T, Jormakka M, Nemeth E, Mackenzie B. Comparative analysis of the functional properties of human and mouse ferroportin. <em>American Journal of Physiology Cell Physiology</em> 324 (5), C1110–C1118; 2023. doi:10.1152/ajpcell.00063.2023

description: Source data for Azucenas CR, Ruwe TA, Bonamer JP, Qiao B, Ganz T, Jormakka M, Nemeth E, Mackenzie B. Comparative analysis of the functional properties of human and mouse ferroportin. <em>American Journal of Physiology Cell Physiology</em> 324 (5), C1110–C1118; 2023. doi:10.1152/ajpcell.00063.2023 All data described in the submitted manuscript are summarized in Figures 1–7 by using mean, SD. Individual scores are provided for each figure within this spreadsheet.
DOI: 10.6084/m9.figshare.22010876.v2
title: Source data for Azucenas CR, Ruwe TA, Bonamer JP, Qiao B, Ganz T, Jormakka M, Nemeth E, Mackenzie B. Comparative analysis of the functional properties of human and mouse ferroportin. <em>American Journal of Physiology Cell Physiology</em> 324 (5), C1110–C1118; 2023. doi:10.1152/ajpcell.00063.2023

description: Source data for Azucenas CR, Ruwe TA, Bonamer JP, Qiao B, Ganz T, Jormakka M, Nemeth E, Mackenzie B. Comparative analysis of the functional properties of human and mouse ferroportin. <em>American Journal of Physiology Cell Physiology</em> 324 (5), C1110–C1118; 2023. doi:10.1152/ajpcell.00063.2023 All data described in the submitted manuscript are summarized in Figures 1–7 by using mean, SD. Individual scores are provided for each figure within this spreadsheet.
DOI: 10.6084/m9.figshare.22010876.v1
title: Source data for Azucenas CR, Ruwe TA, Bonamer JP, Qiao B, Ganz T, Jormakka M, Nemeth E, Mackenzie B. Comparative analysis of the functional properties of human and mouse ferroportin. Submitted to American Journal of Physiology Cell Physiology.

description: Source data for Azucenas CR, Ruwe TA, Bonamer JP, Qiao B, Ganz T, Jormakka M, Nemeth E, Mackenzie B. Comparative analysis of the functional properties of human and mouse ferroportin. Submitted to <em>American Journal of Physiology Cell Physiology</em>. All data described in the submitted manuscript are summarized in Figures 1–7 by using mean, SD. Individual scores are provided for each figure within this spreadsheet.
DOI: 10.6084/m9.figshare.22825535
title: MOB Visium

description: MOB visium data for unimodal experiments
DOI: 10.26093/cds/vizier.36660196
title: Proxima telluric-corrected ESPRESSO RV

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'Automatic model-based telluric correction for the ESPRESSO data reduction software Model description and application to radial velocity computation.' (bibcode: 2022A&A...666A.196A)
DOI: 10.26093/cds/vizier.36660099
title: Globular clusters in PGC 087327

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'A study of globular clusters in a lenticular galaxy in Hydra I from deep HST/ACS photometry.' (bibcode: 2022A&A...666A..99H)
DOI: 10.25345/c5fq9qg24
title: MassIVE MSV000091950 - Malaria Extracts- natural product libraries grant. positive polarity
title: This was a 1500+ sample run taken in both positive and negative mode. This submission is just for the positive data. These are fungal extracts grown by the Cichewicz Lab, prepared by Thillini P, and run on the McCall Lab Q Exactive Plus for the joint Natural Product libraries building grant. These samples had previously had malaria docking on them. at this point of the study, the results of the docking are kept blind for data analysis.
DOI: 10.5281/zenodo.7363636
title: Retry Pattern Dataset

description: Complimentary material to the paper "How The Retry Pattern Impacts Application Performance: A Controlled Experiment" submitted to the 37th Brazilian Symposium on Software Engineering (SBES 2023).
DOI: 10.5281/zenodo.7363637
title: Retry Pattern Dataset

description: Complimentary material to the paper "How The Retry Pattern Impacts Application Performance: A Controlled Experiment" submitted to the 2023 IEEE International Conference on Cloud Computing (CLOUD).
DOI: 10.5281/zenodo.7938908
title: Retry Pattern Dataset

description: Complimentary material to the paper "How The Retry Pattern Impacts Application Performance: A Controlled Experiment" submitted to the 37th Brazilian Symposium on Software Engineering (SBES 2023).
DOI: 10.26093/cds/vizier.19190100
title: Abundances of 6 stars in Praesepe cluster

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Detailed abundances of planet-hosting open clusters. The Praesepe (Beehive) Cluster.' (bibcode: 2021ApJ...919..100V)
DOI: 10.5519/qd.97nqvn89
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (53 records)
DOI: 10.5519/qd.jx8a8y5f
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (43 records)
DOI: 10.5519/qd.2fi50rxq
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (349 records)
DOI: 10.34740/kaggle/dsv/5672691
title: Household Solid Waste in Peru
DOI: 10.5281/zenodo.7826823
title: Dataset to: Novel aerosol diluter – Size dependent characterization down to 1 nm particle size

description: Dataset to: Lampimäki et al. Novel aerosol diluter – Size dependent characterization down to 1 nm particle size. Journal of Aerosol Science 172 (2023) 106180, doi: https://doi.org/10.1016/j.jaerosci.2023.106180
description: This work was supported by the Finnish Research Impact Foundation under grant 4708620.
DOI: 10.5281/zenodo.7826824
title: Dataset to: Novel aerosol diluter – Size dependent characterization down to 1 nm particle size

description: Dataset to: Lampimäki et al. Novel aerosol diluter – Size dependent characterization down to 1 nm particle size. Journal of Aerosol Science 172 (2023) 106180, doi: https://doi.org/10.1016/j.jaerosci.2023.106180
description: This work was supported by the Finnish Research Impact Foundation under grant 4708620.
DOI: 10.5281/zenodo.7938931
title: Experimentally analysed data for Quantitative Microbiology with Microscopy: Effects of Projection and Diffraction

description: Experimentally analysed data for Quantitative Microbiology with Microscopy: Effects of Projection and Diffraction
DOI: 10.5281/zenodo.7938701
title: ICON NAWDEX grids and extpar files

description: Horizontal grids and extpar data for ICON simulations in a limited area setup of the extended North Atlantic domain ("NAWDEX setup"). The grids cover horizontal resolutions of 80, 40, 20, 10, 5 and 2.5 km. For each grid file there is a corresponding extpar file. The grids and extpar files were generated by Aiko Voigt in 2017 and were used for simulations in the following papers: Senf, Voigt et al., 2020: https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2020JD032667 Choudhary and Voigt, 2022: https://wcd.copernicus.org/articles/3/1199/2022/wcd-3-1199-2022.html Sullivan et al. (incld. Voigt), 2023: https://egusphere.copernicus.org/preprints/2023/egusphere-2023-109/
DOI: 10.5281/zenodo.7938700
title: ICON NAWDEX grids and extpar files

description: Horizontal grids and extpar data for ICON simulations in a limited area setup of the extended North Atlantic domain ("NAWDEX setup"). The grids cover horizontal resolutions of 80, 40, 20, 10, 5 and 2.5 km. For each grid file there is a corresponding extpar file. The grids and extpar files were generated by Aiko Voigt in 2017 and were used for simulations in the following papers: Senf, Voigt et al., 2020: https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2020JD032667 Choudhary and Voigt, 2022: https://wcd.copernicus.org/articles/3/1199/2022/wcd-3-1199-2022.html Sullivan et al. (incld. Voigt), 2023: https://egusphere.copernicus.org/preprints/2023/egusphere-2023-109/
DOI: 10.5519/qd.mkz6vbg9
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6073/pasta/66755836518afb0942474c3d0ee05346
title: North Temperate Lakes LTER: Color - Trout Lake Area 1989 - current

description: Color is measured four times per year in the seven northern study lakes (Allequash, Big Muskellunge, Crystal, Sparkling, and Trout lakes, unnamed lakes 27-02 [Crystal Bog] and 12-15 [Trout Bog]) on water samples that are filtered in the field through 0.45 micron capsule filters (0.45 um nuclepore membrane filters before 2015). A spectrophotometer is used to quantify color in the lab as absorbance units, at 1nm intervals between the wavelengths of 200 and 800 nm. All values are given as measurements at the path length of the employed cuvette and should be divided by the cuvette length for a comparable value at a pathlength of 1 cm. Sampling Frequency: 4 times annually. Number of sites: 7.
DOI: 10.5519/qd.a14fnwie
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (21587 records)
DOI: 10.5281/zenodo.7938981
title: Wide range of Brachyceran fly taxa attracted to synthetic and semi-synthetic generic noctuid lures and the description of new attractants for Sciomyzidae and Heleomyzidae families - RAW Data

description: Wide range of Brachyceran fly taxa attracted to synthetic and semi-synthetic generic noctuid lures and the description of new attractants for Sciomyzidae and Heleomyzidae families - RAW Data