cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.b01k5
title: Data from: Dietary and developmental shifts in butterfly-associated bacterial communities

description: Bacterial communities associated with insects can substantially influence
 host ecology, evolution and behavior. Host diet is a key factor that
 shapes bacterial communities, but the impact of dietary transitions across
 insect development is poorly understood. We analyzed bacterial communities
 of 12 butterfly species across different development stages, using
 amplicon sequencing of the 16S rRNA gene. Butterfly larvae typically
 consume leaves of a single host plant, whereas adults are more generalist
 nectar feeders. Thus, we expected bacterial communities to vary
 substantially across butterfly development. Surprisingly,only few species
 showed significant dietary and developmental transitions in bacterial
 communities, suggesting weak impacts of dietary transitions across
 butterfly development. On the other hand, bacterial communities were
 strongly influenced by butterfly species and family identity, potentially
 due to dietary and physiological variation across the host phylogeny.
 Larvae of most butterfly species largely mirrored bacterial community
 composition of their diets, suggesting passive acquisition rather than
 active selection. Overall, our results suggest that although butterflies
 harbor distinct microbiomes across taxonomic groups and dietary guilds,
 the dramatic dietary shifts that occur during development do not impose
 strong selection to maintain distinct bacterial communities across all
 butterfly hosts.
description: Raw_OTUreads_per_sample_No_Cutoff_appliedThis file contains raw 16s reads obtained for each bacterial OTU per sample (sheet 1). The sample code for each sample is given (sheet 2). No rare bacterial OTU cutoff is applied. This is the main file that is used to derive all other bacterial OTU subsets by applying rare OTU cutoffs.Sample_InformationThis file contains information related to each sample e.g. sample codes, species, family, developmental stage, reads per sample etc.Sample_Info.xlsxCAPdiscrim R CodeCAPdiscrim.RPERMANOVA_Adonis_Vegan R CodePERMANOVA_Adonis_Vegan.RDiversity_measurements R CodeDiversity_measurements.ROTU_Table_Top5_OTUs_for_each_speciesThis OTU table include top 5 abundant OTUs across larvae, pupae and adults of butterfly hostsOTU_Table_minimum_20_reads_Cut-OffThis file contains OTUs filtered with minimum 20 reads per OTU per sample cut-off for all the samples included in this studyOTU_Table_5%_abundnace_Cut-offThis file contains OTUs filtered with 5% abundance cut-off for all the samples included in this studyOTU_Table_0.005%_abundnace_Cut-offThis file contains OTUs filtered with 0.005% overall abundance cut-off for all the samples included in this study.OTU_Table_even_depth_3000This file contains bacterial OTUs in each sample after rarefying an entire dataset to even depth of 3000 readsCore_OTUsThis file contains core bacterial OTUs that occur in &gt;80% of the samples of entire sample setRead_MeThis file states few details about the OTU tables and R codes.
DOI: 10.5517/ccdc.csd.cc2q09hk
title: CCDC 2502738: Experimental Crystal Structure Determination

description: Related Article: ChenYiXin|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2q09ln
title: CCDC 2502741: Experimental Crystal Structure Determination

description: Related Article: ChenYiXin|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2q09mp
title: CCDC 2502742: Experimental Crystal Structure Determination

description: Related Article: ChenYiXin|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.mc450
title: Data from: Angelica muliense sp. nov. (Apiaceae), a new species from Sichuan, Southwest China

description: Angelica muliensis (Apiaceae), a new species from Sichuan Province,
 southwest China, is described and illustrated. The new species resembles
 A. biserrata, but is mainly differed by the shapes of leaflets and
 sheaths, umbel number and size, especially mericarp features. The
 distinguishing characters of these two species are presented and compared.
description: figures of Angelica
 muliensisdiagram, photos, parafin
 section picture
DOI: 10.5517/ccdc.csd.cc2q09nq
title: CCDC 2502743: Experimental Crystal Structure Determination

description: Related Article: ChenYiXin|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.bd124
title: Data from: Stand-level drivers most important in determining boreal forest response to climate change

description: Forest ecosystems contain several climate-sensitive drivers that respond
 differentially to changes in climate and climate variability: For example,
 growth and regeneration processes are “stand-scale” drivers, while natural
 disturbances operate at “landscape-scale”. The relative contributions of
 these different scale drivers of change in ecosystems create great
 uncertainty when simulating potential responses of a forest to changes in
 climate. Here we assess those contributions, along with harvesting
 effects, on biomass (both total and of individual species) in the southern
 boreal forest of Canada under three climate scenarios (RCP 2.6, RCP 4.5
 and RCP 8.5). Projections were performed for three future 30-year time
 periods, in four study regions located on an east-west transect, using a
 forest landscape model (LANDIS-II), parameterized using a forest patch
 model (PICUS). Projected future impacts were assessed for each driver of
 change, and found to vary greatly among regions, species, future period,
 and forcing scenarios. Fire, and stand-scale climate-induced impacts, had
 the strongest effects on forest vegetation, as well as on total and
 species’ biomass under most RCP scenarios, but the largest impacts
 occurred mostly after 2050, particularly with the RCP 8.5 scenario. The
 relative importance and trends in species-specific impacts varied, both
 spatially and according to the different RCP scenarios. Western regions
 were generally more sensitive to stand-scale climate-induced changes
 whereas eastern regions were more sensitive to changes in fire regime. Our
 study also highlights the importance of considering the prevalence of
 species-level functional traits when assessing the sensitivity of forest
 landscapes to a given driver of change in the context of increasing
 anthropogenic climate forcing.
description: LANDIS Files -
 AMInput files to run
 LANDIS simulations for the AM regionLandisFiles_AM.zipLandisFiles_BPInput files to run LANDIS simulations for the BP regionLandisFiles_BSEInput files to run LANDIS simulations for the BSE regionLandisFiles_BSWInput files to run LANDIS simulations for the BSW region
DOI: 10.5061/dryad.f6506
title: Data from: Rapid assessment of forest canopy and light regime using smartphone hemispherical photography

description: Hemispherical photography (HP), implemented with cameras equipped with
 “fisheye” lenses, is a widely used method for describing forest canopies
 and light regimes. A promising technological advance is the availability
 of low-cost fisheye lenses for smartphone cameras. However, smartphone
 camera sensors cannot record a full hemisphere. We investigate whether
 smartphone HP is a cheaper and faster but still adequate operational
 alternative to traditional cameras for describing forest canopies and
 light regimes. We collected hemispherical pictures with both smartphone
 and traditional cameras in 223 forest sample points, across different
 overstory species and canopy densities. The smartphone image acquisition
 followed a faster and simpler protocol than that for the traditional
 camera. We automatically thresholded all images. We processed the
 traditional camera images for Canopy Openness (CO) and Site Factor
 estimation. For smartphone images, we took two pictures with different
 orientations per point and used two processing protocols: (i) we estimated
 and averaged total canopy gap from the two single pictures, and (ii)
 merging the two pictures together, we formed images closer to full
 hemispheres and estimated from them CO and Site Factors. We compared the
 same parameters obtained from different cameras and estimated generalized
 linear mixed models (GLMMs) between them. Total canopy gap estimated from
 the first processing protocol for smartphone pictures was on average
 significantly higher than CO estimated from traditional camera images,
 although with a consistent bias. Canopy Openness and Site Factors
 estimated from merged smartphone pictures of the second processing
 protocol were on average significantly higher than those from traditional
 cameras images, although with relatively little absolute differences and
 scatter. Smartphone HP is an acceptable alternative to HP using
 traditional cameras, providing similar results with a faster and cheaper
 methodology. Smartphone outputs can be directly used as they are for
 ecological studies, or converted with specific models for a better
 comparison to traditional cameras.
description: Estimations from HP
 imagesEstimated parameters
 from traditional and smartphone hemispherical images. Data used for
 analysis and GLMMs calibration.data_hp.csvSmartphone imagesDiagonal smartphone images taken with a Samsung Galaxy Grand Prime smartphone in the same plot (East-West and North-South orientation), and resulting merged picture from Hugin processing.smartphone_images.zipHugin processingScripts for writing and running in a batch mode the Hugin files for all your paired smartphone diagonal pictures and merge them.Hugin_files.zipEnhanceHP thresholding for smartphone picturesScript for batch processing of all diagonals and merged smartphone pictures using the package caiman. Includes comments to adjust the specific settings.3_EnhanceHP_smartphone_pics.R
DOI: 10.15468/dl.3mrutj
title: Occurrence Download

description: A dataset containing 247293 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Calidris maritima, Calidris mauri, Calidris melanotos, Calidris minutilla, Calidris pugnax)",
 "Country is Canada",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON ((-84.76571 41.22334, -58.93394 41.22334, -58.93394 49.85477, -84.76571 49.85477, -84.76571 41.22334))",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 247293 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009350-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.30018.24008
title: Bollettino sismico Regione Umbria 2024 per Google Earth
DOI: 10.15468/dl.h6remc
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Koeleria sclerophylla"
 ]
}

 The dataset includes 90 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009391-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5787a6
title: Occurrence Download

description: A dataset containing 1476 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Tragopan temminckii"
 ]
}

 The dataset includes 1476 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009393-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.at597c
title: Occurrence Download

description: A dataset containing 96 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 (CAST(occurrence.taxonkey AS INTEGER) = 2286069 OR CAST(occurrence.acceptedtaxonkey AS INTEGER) = 2286069 OR CAST(occurrence.kingdomkey AS INTEGER) = 2286069 OR CAST(occurrence.phylumkey AS INTEGER) = 2286069 OR CAST(occurrence.classkey AS INTEGER) = 2286069 OR CAST(occurrence.orderkey AS INTEGER) = 2286069 OR CAST(occurrence.familykey AS INTEGER) = 2286069 OR CAST(occurrence.genuskey AS INTEGER) = 2286069 OR CAST(occurrence.specieskey AS INTEGER) = 2286069)
 AND LOWER(occurrence.v_scientificname) = LOWER('Crassostrea gigas')
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 96 records were derived from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009357-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26188/30717038
title: Synthetic event log with control-flow deviations and known ground-truth causal factors from a loan application process

description: This synthetic event log contains control-flow deviations with known ground-truth causal factors, based on a loan application process scenario. The normative process model is also provided.
DOI: 10.26188/30717038.v2
title: Synthetic event log with control-flow deviations and known ground-truth causal factors from a loan application process

description: This synthetic event log contains control-flow deviations with known ground-truth causal factors, based on a loan application process scenario.
DOI: 10.26188/30717038.v3
title: Synthetic event log with control-flow deviations and known ground-truth causal factors from a loan application process

description: This synthetic event log contains control-flow deviations with known ground-truth causal factors, based on a loan application process scenario. The normative process model is also provided.
DOI: 10.15468/dl.kdxn6v
title: Occurrence Download

description: A dataset containing 13694 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 64.085278",
 "DecimalLatitude is less than or equal to 69.085278",
 "DecimalLongitude is greater than or equal to -165.0",
 "DecimalLongitude is less than or equal to -160.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 13694 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009395-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17720552
title: Data for the publication titled "Homomolecular Photon Upconversion in a Perylene-Decorated Iron(III) Complex", doi.org/10.1021/jacs.5c16091
DOI: 10.5281/zenodo.17720553
title: Data for the publication titled "Homomolecular Photon Upconversion in a Perylene-Decorated Iron(III) Complex", doi.org/10.1021/jacs.5c16091
DOI: 10.17605/osf.io/75n6t
title: Diverse mathematical knowledge among indigenous Amazonians
DOI: 10.6084/m9.figshare.29312087.v3
title: <b>Dataset</b><b> about Warming Effects on </b><b>Carbon </b><b>cycling and Greenhouse Gas Fluxes in Permafrost Ecosystems</b>

description: This is a placeholder link currently used to reserve the DOI.
DOI: 10.15468/dl.tgxxky
title: Occurrence Download

description: A dataset containing 9309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rhabdophis)",
 "DecimalLatitude is greater than or equal to 0",
 "DecimalLatitude is less than or equal to 60",
 "DecimalLongitude is greater than or equal to 60",
 "DecimalLongitude is less than or equal to 150",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 9309 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009396-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fs6gnh
title: Occurrence Download

description: A dataset containing 1428 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "StateProvince is one of (Aguascalientes, Guanajuato, Guerrero, Hidalgo, Jalisco, México, Michoacán, Morelos, Nuevo León, Oaxaca, Puebla, Querétaro, San Luis Potosí, Tamaulipas, Tlaxcala, Veracruz, Guatemala, Honduras)",
 "TaxonKey is Opuntia tomentosa"
 ]
}

 The dataset includes 1428 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009397-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30719633
title: Raw data of Oxygen-adaptive plasticity of Asgard archaea dependent on terminal oxidase and globin

description: Raw data of Oxygen-adaptive plasticity of Asgard archaea dependent on terminal oxidase and globin
DOI: 10.6084/m9.figshare.30719633.v1
title: Raw data of Oxygen-adaptive plasticity of Asgard archaea dependent on terminal oxidase and globin

description: Raw data of Oxygen-adaptive plasticity of Asgard archaea dependent on terminal oxidase and globin
DOI: 10.6084/m9.figshare.29312087.v4
title: Dataset about Warming Effects on Carbon Cycling and Greenhouse Gas Fluxes in Permafrost Ecosy<b>stems</b>

description: This dataset compiles observation-based results on the impact of experimental warming on carbon cycles and greenhouse gas (GHG) fluxes in permafrost ecosystems. It integrates 1,430 independent warming experiments extracted from 132 peer-reviewed studies published between 1990 and 2024, covering eight major permafrost ecosystem types across the Northern Hemisphere.The dataset provides 17 variables including plant and soil carbon pools, soil nitrogen pools, and GHG fluxes (CO₂, CH₄, and N₂O), together with site information (latitude, longitude, altitude, ecosystem type, plant type, climate zone), climate conditions, and experimental design (warming method, magnitude, and duration).The following files are included:1. “Data_Permafrost_Carbon.xlsx” includes the data. The “Dataset” sheet included data collected from 1430 pairs of observations from 132 published studies, while the “Readme” sheet contains descriptions of the abbreviations and variables within the dataset.2. “Data_Meta.docx” includes a summary defining each column, trait collected in the data and the unit for each variable.3. “Data_publications.docx” contains all the 132 references of the articles for the dataset.4. “Code.rar” includes all the Python code for data scraping, site map plotting, data validation (funnel plots), and table data generation for this study.We will continue to update and improve the dataset, and encourage others to contribute new data to enhance its coverage. Newly published data will be added to this open-source dataset. This dataset can be used for meta-analyses and literature reviews to explore research frontiers in permafrost carbon-climate feedbacks. This dataset can also serve as observational data to assist in validating research findings based on remote sensing observations. Moreover, it could improve permafrost-related parameterization schemes in land models by providing empirical evidences for model calibration and validation.
DOI: 10.15468/dl.ypausg
title: Occurrence Download

description: A dataset containing 5898 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lutjanus fulvus",
 "Year 2000-2025"
 ]
}

 The dataset includes 5898 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009400-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u9gudz
title: Occurrence Download

description: A dataset containing 2399 species occurrences available in GBIF matching the query:
{
 "SpeciesKey" : [
 "is Lepus saxatilis"
 ]
}

 The dataset includes 2399 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009399-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4u6fy8
title: Occurrence Download

description: A dataset containing 824 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "StateProvince is one of (Zacatecas, San Luis Potosí, Guanajuato, Aguascalientes, Jalisco, Durango, Chihuahua, Coahuila, Nuevo León)",
 "TaxonKey is Opuntia leucotricha"
 ]
}

 The dataset includes 824 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009402-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.