cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5985880
title: Additional file 1 of Clustering multilayer omics data using MuNCut

description: The file SupplementaryFile.xlsx contains detailed MuNCut clustering results for BRCA and CESC data. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.5985880.v1
title: Additional file 1 of Clustering multilayer omics data using MuNCut

description: The file SupplementaryFile.xlsx contains detailed MuNCut clustering results for BRCA and CESC data. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.5985865
title: Additional file 1: of A new two-strip TLC method for the quality control of technetium-99m mercaptoacetyl-triglycine (99mTc-MAG3)

description: ESM_1. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.5985865.v1
title: Additional file 1: of A new two-strip TLC method for the quality control of technetium-99m mercaptoacetyl-triglycine (99mTc-MAG3)

description: ESM_1. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.5985850
title: Additional file 9: of Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci

description: Table S7. List of tapRNAs with mutated CTCF and/or ZNF263 sites. (XLSX 115 kb)
DOI: 10.6084/m9.figshare.5985850.v1
title: Additional file 9: of Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci

description: Table S7. List of tapRNAs with mutated CTCF and/or ZNF263 sites. (XLSX 115 kb)
DOI: 10.6084/m9.figshare.5985838
title: Additional file 3: of Holobionts and ecological speciation: the intestinal microbiota of lake whitefish species pairs

description: Table S3. Bacterial species specific to a single whitefish species within lake obtained with Metastats and BLAST. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.5985838.v1
title: Additional file 3: of Holobionts and ecological speciation: the intestinal microbiota of lake whitefish species pairs

description: Table S3. Bacterial species specific to a single whitefish species within lake obtained with Metastats and BLAST. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.5985832
title: Additional file 8: of Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci

description: Table S6. Metanalysis of pcRNA expression across different cancer studies. (XLSX 190 kb)
DOI: 10.6084/m9.figshare.5985832.v1
title: Additional file 8: of Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci

description: Table S6. Metanalysis of pcRNA expression across different cancer studies. (XLSX 190 kb)
DOI: 10.6084/m9.figshare.5985826
title: Additional file 2: of Holobionts and ecological speciation: the intestinal microbiota of lake whitefish species pairs

description: Table S2. Bacterial taxa found in the PCR negative control. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.5985826.v1
title: Additional file 2: of Holobionts and ecological speciation: the intestinal microbiota of lake whitefish species pairs

description: Table S2. Bacterial taxa found in the PCR negative control. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.5985823
title: MOESM3 of High-throughput screening of Mucoromycota fungi for production of low- and high-value lipids

description: Additional file 3. Â FTIR spectra of fungal biomass.
DOI: 10.6084/m9.figshare.5985823.v1
title: MOESM3 of High-throughput screening of Mucoromycota fungi for production of low- and high-value lipids

description: Additional file 3. Â FTIR spectra of fungal biomass.
DOI: 10.6084/m9.figshare.5985817
title: Additional file 1: of Holobionts and ecological speciation: the intestinal microbiota of lake whitefish species pairs

description: Table S1. Steps used to reduce sequencing and PCR errors. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.5985817.v1
title: Additional file 1: of Holobionts and ecological speciation: the intestinal microbiota of lake whitefish species pairs

description: Table S1. Steps used to reduce sequencing and PCR errors. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.5985814
title: Additional file 7: of Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci

description: Table S5. Nanostring data. (XLSX 232 kb)
DOI: 10.6084/m9.figshare.5985814.v1
title: Additional file 7: of Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci

description: Table S5. Nanostring data. (XLSX 232 kb)
DOI: 10.6084/m9.figshare.5985805
title: MOESM2 of High-throughput screening of Mucoromycota fungi for production of low- and high-value lipids

description: Additional file 2. Â GC-FID and GC-MS fatty acid analysis results.
DOI: 10.6084/m9.figshare.5985805.v1
title: MOESM2 of High-throughput screening of Mucoromycota fungi for production of low- and high-value lipids

description: Additional file 2. Â GC-FID and GC-MS fatty acid analysis results.
DOI: 10.6084/m9.figshare.5985799
title: Additional file 6: of Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci

description: Table S4. GO enrichment protein coding genes associated with pcRNAs in each possible orientation. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.5985799.v1
title: Additional file 6: of Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci

description: Table S4. GO enrichment protein coding genes associated with pcRNAs in each possible orientation. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.5985775
title: Additional file 3: of Prognostic DNA methylation markers for sporadic colorectal cancer: a systematic review

description: Table S3. Characteristics of 83 included studies. (XLSX 95Â kb)
DOI: 10.6084/m9.figshare.5985775.v1
title: Additional file 3: of Prognostic DNA methylation markers for sporadic colorectal cancer: a systematic review

description: Table S3. Characteristics of 83 included studies. (XLSX 95Â kb)
DOI: 10.6084/m9.figshare.5985772
title: Additional file 5: of Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci

description: Table S3. GO enrichment of pcRNA-associated protein coding genes. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.5985772.v1
title: Additional file 5: of Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci

description: Table S3. GO enrichment of pcRNA-associated protein coding genes. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.5985766
title: Additional file 1: of Evaluation of tumor M2-pyruvate kinase (Tumor M2-PK) as a biomarker for pancreatic cancer

description: The original dataset is provided as a supplementary file. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.5985766.v1
title: Additional file 1: of Evaluation of tumor M2-pyruvate kinase (Tumor M2-PK) as a biomarker for pancreatic cancer

description: The original dataset is provided as a supplementary file. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.5985742
title: Additional file 1: of Anatomy of a Neotropical insect radiation

description: Spreadsheet with list of permits obtained for research, collection, export and import of specimens used in this study, and respective granting agencies. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.5985733
title: Additional file 1 of Erythrocyte fatty acid profiles in children are not predictive of autism spectrum disorder status: a case control study

description: Individual level fatty acid measurements. Deidentified individual-level data analyzed in this work. (CSV 11 kb)
DOI: 10.6084/m9.figshare.5985733.v1
title: Additional file 1 of Erythrocyte fatty acid profiles in children are not predictive of autism spectrum disorder status: a case control study

description: Individual level fatty acid measurements. Deidentified individual-level data analyzed in this work. (CSV 11 kb)
DOI: 10.6084/m9.figshare.5985727
title: Additional file 3: of Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci

description: Table S2. Annotation of pcRNAs. (XLSX 494 kb)
DOI: 10.6084/m9.figshare.5985727.v1
title: Additional file 3: of Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci

description: Table S2. Annotation of pcRNAs. (XLSX 494 kb)
DOI: 10.6084/m9.figshare.5985691
title: Additional file 1: of Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci

description: Table S1. List of RNA-Seq and ChIP-Seq datasets used in the study. (XLSX 304 kb)
DOI: 10.6084/m9.figshare.5985691.v1
title: Additional file 1: of Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci

description: Table S1. List of RNA-Seq and ChIP-Seq datasets used in the study. (XLSX 304 kb)
DOI: 10.6084/m9.figshare.5985676
title: Additional file 7: of Impact of atopy on risk of glioma: a Mendelian randomisation study

description: Table S6. Inverse-variance weighting, maximum likelihood estimation, weighted median estimate, mode-based estimate and Mendelian randomisation-Egger test results for combined atopy-related instrumental variables and glioma subtypes. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.5985676.v1
title: Additional file 7: of Impact of atopy on risk of glioma: a Mendelian randomisation study

description: Table S6. Inverse-variance weighting, maximum likelihood estimation, weighted median estimate, mode-based estimate and Mendelian randomisation-Egger test results for combined atopy-related instrumental variables and glioma subtypes. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.5985670
title: Additional file 10: of Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci

description: Table S8. Oligonucleotides, clones and cell lines used in this study. (XLSX 11 kb)
DOI: 10.17632/r5tfvj35p3.8
title: Data for: Adolescent Aggression and Violent Video Games: The role of moral disengagement and parental rearing patterns

description: Data for: Adolescent Aggression and Violent Video Games: The role of moral disengagement and parental rearing patterns boys=1, girls=2.
DOI: 10.6084/m9.figshare.5985670.v1
title: Additional file 10: of Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci

description: Table S8. Oligonucleotides, clones and cell lines used in this study. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5985658
title: Additional file 6: of Impact of atopy on risk of glioma: a Mendelian randomisation study

description: Table S5. Simulation analyses. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.5985658.v1
title: Additional file 6: of Impact of atopy on risk of glioma: a Mendelian randomisation study

description: Table S5. Simulation analyses. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.5985637
title: Additional file 5: of Impact of atopy on risk of glioma: a Mendelian randomisation study

description: Table S4. Range of odds ratios for which study had &lt; 80% power, for each atopy-related trait (P = 0.05, two-sided). (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5985637.v1
title: Additional file 5: of Impact of atopy on risk of glioma: a Mendelian randomisation study

description: Table S4. Range of odds ratios for which study had &lt; 80% power, for each atopy-related trait (P = 0.05, two-sided). (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5985619
title: Additional file 4: of Impact of atopy on risk of glioma: a Mendelian randomisation study

description: Table S3. Percentage of variance explained by the combined sets of single nucleotide polymorphisms used as instrumental variables. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.5985619.v1
title: Additional file 4: of Impact of atopy on risk of glioma: a Mendelian randomisation study

description: Table S3. Percentage of variance explained by the combined sets of single nucleotide polymorphisms used as instrumental variables. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.5985598
title: Additional file 3: of Impact of atopy on risk of glioma: a Mendelian randomisation study

description: Table S2. Table of single nucleotide polymorphisms (SNPs) reported in the NHGRI-EBI Genome-wide Association Studies Catalog for each trait, with correlations between SNPs. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.5985598.v1
title: Additional file 3: of Impact of atopy on risk of glioma: a Mendelian randomisation study

description: Table S2. Table of single nucleotide polymorphisms (SNPs) reported in the NHGRI-EBI Genome-wide Association Studies Catalog for each trait, with correlations between SNPs. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.5985577
title: Additional file 2: of Impact of atopy on risk of glioma: a Mendelian randomisation study

description: Table S1. Summary of the eight glioma genome-wide association studies. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.5985577.v1
title: Additional file 2: of Impact of atopy on risk of glioma: a Mendelian randomisation study

description: Table S1. Summary of the eight glioma genome-wide association studies. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.5985571
title: Additional file 1: of Chronic diseases multi-morbidity among adult patients at Hawassa University Comprehensive Specialized Hospital

description: Dataset. Dataset supporting conclusions of the study on chronic diseases multi-morbidity among adult patients at Hawassa University Comprehensive Specialized Hospital, February 2016. (XLSX 73Â kb)
DOI: 10.6084/m9.figshare.5985571.v1
title: Additional file 1: of Chronic diseases multi-morbidity among adult patients at Hawassa University Comprehensive Specialized Hospital

description: Dataset. Dataset supporting conclusions of the study on chronic diseases multi-morbidity among adult patients at Hawassa University Comprehensive Specialized Hospital, February 2016. (XLSX 73Â kb)
DOI: 10.6084/m9.figshare.5985481
title: MOESM1 of Cerebrospinal fluid protein and glucose levels in neonates with a systemic inflammatory response without meningitis

description: Additional file 1. Raw data for the newborns included in the report.
DOI: 10.6084/m9.figshare.5985481.v1
title: MOESM1 of Cerebrospinal fluid protein and glucose levels in neonates with a systemic inflammatory response without meningitis

description: Additional file 1. Raw data for the newborns included in the report.
DOI: 10.6084/m9.figshare.5985259
title: Theoretical ribosomal protein mass fingerprint of Cyanidioschyzon merolae

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Cyanidioschyzon merolae</i>.<br><br>
DOI: 10.6084/m9.figshare.5985259.v1
title: Theoretical ribosomal protein mass fingerprint of Cyanidioschyzon merolae

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Cyanidioschyzon merolae</i>.<br><br>
DOI: 10.6084/m9.figshare.5985229
title: JEB data file G. niger.xlsx

description: Datasheet1. Sperm velocity (VCL) of sneaker and territorial black goby males in different activating solutions (no seminal fluid, own seminal fluid, the seminal fluid of the opposite tactic)Datasheet2. <i>in vitro</i> fertilization success of sneaker and territorial ejaculates <br><br>
DOI: 10.6084/m9.figshare.5985229.v1
title: JEB data file G. niger.xlsx

description: Datasheet1. Sperm velocity (VCL) of sneaker and territorial black goby males in different activating solutions (no seminal fluid, own seminal fluid, the seminal fluid of the opposite tactic)Datasheet2. <i>in vitro</i> fertilization success of sneaker and territorial ejaculates <br><br>
DOI: 10.6084/m9.figshare.5985148
title: Additional material

description: Table e-1.<br>Patients included in the analysis and participating Centers.<br><br>Table e-2.<br>Previous treatment history of the unmatched population included in the analysis.<br><br>Table e-3.<br>Baseline characteristics of matched study population by previous treatment history.<br>
DOI: 10.6084/m9.figshare.5985148.v1
title: Additional material

description: Table e-1.<br>Patients included in the analysis and participating Centers.<br><br>Table e-2.<br>Previous treatment history of the unmatched population included in the analysis.<br><br>Table e-3.<br>Baseline characteristics of matched study population by previous treatment history.<br>
DOI: 10.6084/m9.figshare.5985103.v1
title: YF_Brazil-figshare.zip

description: Data and analysis for manuscript titled "Spatio-temporal spillover risk of yellow fever in Brazil" <br>
DOI: 10.6084/m9.figshare.5985043.v1
title: cmenet: a new method for bi-level variable selection of conditional main effects

description: This paper introduces a novel method for selecting main effects and a set of reparametrized effects called conditional main effects (CMEs), which capture the conditional effect of a factor at a fixed level of another factor. CMEs represent interpretable, domain-specific phenomena for a wide range of applications in engineering, social sciences and genomics. The key challenge is in incorporating the implicit grouped structure of CMEs within the variable selection procedure itself. We propose a new method, cmenet, which employs two principles called CME coupling and CME reduction to effectively navigate the selection algorithm. Simulation studies demonstrate the improved CME selection performance of cmenet over more generic selection methods. Applied to a gene association study on fly wing shape, cmenet not only yields more parsimonious models and improved predictive performance over standard two-factor interaction analysis methods, but also reveals important insights on gene activation behavior, which can be used to guide further experiments. Efficient implementations of our algorithms are available in the R package cmenet in CRAN.
DOI: 10.6084/m9.figshare.5985037
title: Survey data for Rifampicin resistance in new bacteriologically confirmed pulmonary tuberculosis patients in Cameroon

description: This dataset consists of a single, openly-accessible OpenDocument Spreadsheet (<b>.ods</b>) file containing aggregated survey data on new cases of tuberculosis and Rifampicin resistance in Cameroon. Survey data were collected from all 248 tuberculosis (TB) diagnostic and treatment centres (DTC) managed by the National TB Programme (NTP), over a period of 6 weeks: 13th of March to 21st of April 2017.<br>Camerooon's network of DTCs diagnose virtually all of the country's TB cases. The related study investigated a 'notification gap' between the 175 actual Rifampicin resistant and/or multidrug resistant (RR/MDR-TB) patients and the WHO-estimated figure of 1,200 RR/MDR-TB cases. The study addresses whether this gap can be accounted for by testing new bacteriologically confirmed pulmonary TB cases (PTB+ NC).<br>All patients aged 15 years and above presenting at each DTC with symptoms compatible with pulmonary TB were asked according to NTCP guidelines to submit two sputum samples which were examined microscopically. A patient with a positive sputum for acid-fast bacilli (AFB) who had never been treated with anti-tuberculosis drugs for more than one month was considered a new pulmonary TB case with bacteriological confirmation (PTB+NC). Patients previously treated for TB as well as those with uncertain TB antecedents were excluded from the study.<br><br>The dataset contains data on the following variables for the 10 regions of Cameroon and the country in total:<br><b>Reg: </b>Region<b>Pop: </b>Population<b>NC: </b>New cases of PTB reported in this study<b>RR:</b> New cases of Rifampicin resistant PTB reported in this study<b>in_NC:</b> Incidence rate of new cases of PTB per 100,000 of overall population<br><b>in_RR:</b> Incidence rate of new cases of PTB with Rifampicin resistance per 100,000 of overall population<b>Sample: </b>Number of NC cases with positive Rifampicin resistance sample result<br><b>Prop_RR:</b> Proportion of new cases of PTB reported with Rifampicin resistance in this study<br><b>Conf_1 and </b><b>Conf_2: </b>Confidence intervals for estimated prevalence of MDR-TB in new bacteriologically-confirmed pulmonary TB cases<b>RR_2016</b><b>:</b> Rifampicin resistant and/or multidrug resistant (RR/MDR-TB) cases actually reported by DTCs in 2016<br><b>In_RR_2016: </b>Incidence rate of RR/MDR-TB per 100,000 of overall population as reported by DTCs in 2016<br><b>inTPM+-NC 2016: </b>Incidence rate of new cases of Rifampicin resistant PTB per 100,000 of overall population as reported by DTCs in 2016<br>The 10 regions of Cameroon are outlined in the related publication.
DOI: 10.6084/m9.figshare.5985037.v1
title: Survey data for Rifampicin resistance in new bacteriologically confirmed pulmonary tuberculosis patients in Cameroon

description: This dataset consists of a single, openly-accessible OpenDocument Spreadsheet (<b>.ods</b>) file containing aggregated survey data on new cases of tuberculosis and Rifampicin resistance in Cameroon. Survey data were collected from all 248 tuberculosis (TB) diagnostic and treatment centres (DTC) managed by the National TB Programme (NTP), over a period of 6 weeks: 13th of March to 21st of April 2017.<br>Camerooon's network of DTCs diagnose virtually all of the country's TB cases. The related study investigated a 'notification gap' between the 175 actual Rifampicin resistant and/or multidrug resistant (RR/MDR-TB) patients and the WHO-estimated figure of 1,200 RR/MDR-TB cases. The study addresses whether this gap can be accounted for by testing new bacteriologically confirmed pulmonary TB cases (PTB+ NC).<br>All patients aged 15 years and above presenting at each DTC with symptoms compatible with pulmonary TB were asked according to NTCP guidelines to submit two sputum samples which were examined microscopically. A patient with a positive sputum for acid-fast bacilli (AFB) who had never been treated with anti-tuberculosis drugs for more than one month was considered a new pulmonary TB case with bacteriological confirmation (PTB+NC). Patients previously treated for TB as well as those with uncertain TB antecedents were excluded from the study.<br><br>The dataset contains data on the following variables for the 10 regions of Cameroon and the country in total:<br><b>Reg: </b>Region<b>Pop: </b>Population<b>NC: </b>New cases of PTB reported in this study<b>RR:</b> New cases of Rifampicin resistant PTB reported in this study<b>in_NC:</b> Incidence rate of new cases of PTB per 100,000 of overall population<br><b>in_RR:</b> Incidence rate of new cases of PTB with Rifampicin resistance per 100,000 of overall population<b>Sample: </b>Number of NC cases with positive Rifampicin resistance sample result<br><b>Prop_RR:</b> Proportion of new cases of PTB reported with Rifampicin resistance in this study<br><b>Conf_1 and </b><b>Conf_2: </b>Confidence intervals for estimated prevalence of MDR-TB in new bacteriologically-confirmed pulmonary TB cases<b>RR_2016</b><b>:</b> Rifampicin resistant and/or multidrug resistant (RR/MDR-TB) cases actually reported by DTCs in 2016<br><b>In_RR_2016: </b>Incidence rate of RR/MDR-TB per 100,000 of overall population as reported by DTCs in 2016<br><b>inTPM+-NC 2016: </b>Incidence rate of new cases of Rifampicin resistant PTB per 100,000 of overall population as reported by DTCs in 2016<br>The 10 regions of Cameroon are outlined in the related publication.