cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3943826
title: RARE: A Labeled Dataset for Cloud-Native Memory Anomalies

description: The dataset is linked to the paper RARE: A Labeled Dataset for Cloud-Native Memory Anomalies (https://doi.org/10.1145/3416505.3423560) This dataset has been generated using a microservice for injecting artificial byte stream in order to overload the nodes, provoking memory anomalies, It includes 2 files: - List_of_anomalies.csv includes the details on the anomalies injected - RARE.csv is the actual dataset. There are a total of 30 anomalies injected in the dataset. The full dataset comprise 10K labelled time-series, each with 7062 metrics.
DOI: 10.5281/zenodo.5083334
title: VaryMinions

description: Business processes have to manage \textit{variability} in their execution, \eg to deliver the correct building permit in different municipalities. This variability is visible in event logs, where sequences of events are shared by the core process (building permit authorisation) but may also be specific to each municipality. To rationalise resources (\eg derive a configurable business process capturing all municipalities' permit variants) or to debug anomalous behaviours, it is mandatory to identify to which variant a given trace belongs. This paper supports this task by training Long Short Term Memory (LSTMs) and Gated Recurrent Units (GRUs) algorithms on two datasets: a configurable municipality and a travel expenses workflow. We demonstrate that variability can be identified accurately ($&gt;87\%$) and discuss the challenges of learning highly entangled variants. This repository gathers all materials that were used to conduct experiments to predict to which variant an execution trace belongs to. We so far experimented with business processes.
description: Sophie Fortz is supported by the FNRS via a FRIA grant. Paul Temple is supported by the EOS VeriLearn project (FNRS/FWO Grant ). Gilles Perrouin is an FNRS Research Associate.
DOI: 10.5281/zenodo.6982879
title: data for "Capturing synoptic-scale variations in surface aerosol pollution using deep learning with meteorological data"

description: data for "Capturing synoptic-scale variations in surface aerosol pollution using deep learning with meteorological data"
DOI: 10.5281/zenodo.7325555
title: Data for "Different Martian Crustal Seismic Velocities across the Dichotomy Boundary from Multi-Orbiting Surface Waves"

description: Data for "Different Martian Crustal Seismic Velocities across the Dichotomy Boundary from Multi-Orbiting Surface Waves"
DOI: 10.6084/m9.figshare.20485531
title: Experiencing Inoculation: A Qualitative Analysis of an Interrupted Message Design

description: The persuasion literature shows robust support for the effectiveness of inoculation as a resistance strategy. Despite our more nuanced understanding of the theoretical process, scholars have yet to investigate how individuals experience inoculation as it occurs. Researchers conducted 31 in-depth interviews of men in a residential recovery facility. Interviews were collected at multiple points during the presentation of an inoculation message in order to collect participants’ perceptions and responses to each message component. Deductive thematic analysis was used to determine how and why responses are elicited during inoculation, based on theoretical predictions. Findings illustrate that threat is experienced differently at multiple points throughout the inoculation message, suggesting that the forewarning and weakened counterarguments elicit unique expressions that resemble apprehension and motivation, respectively. Additionally, counterarguments stemming from the message content often take the form of direct refutations, focusing primarily on the long-term negative consequences of the threat (i.e., relapse).
DOI: 10.6084/m9.figshare.20485531.v1
title: Experiencing Inoculation: A Qualitative Analysis of an Interrupted Message Design

description: The persuasion literature shows robust support for the effectiveness of inoculation as a resistance strategy. Despite our more nuanced understanding of the theoretical process, scholars have yet to investigate how individuals experience inoculation as it occurs. Researchers conducted 31 in-depth interviews of men in a residential recovery facility. Interviews were collected at multiple points during the presentation of an inoculation message in order to collect participants’ perceptions and responses to each message component. Deductive thematic analysis was used to determine how and why responses are elicited during inoculation, based on theoretical predictions. Findings illustrate that threat is experienced differently at multiple points throughout the inoculation message, suggesting that the forewarning and weakened counterarguments elicit unique expressions that resemble apprehension and motivation, respectively. Additionally, counterarguments stemming from the message content often take the form of direct refutations, focusing primarily on the long-term negative consequences of the threat (i.e., relapse).
DOI: 10.17632/bkgzghyjrc.1
title: Early prediction of hemodialysis arteriovenous fistula failure in end-stage kidney disease patients using ultrasonographic and color-Doppler assessment – an experience from a tertiary care centre in India

description: Purpose –  Arterio-venous fistula (AVF) failure is a major concern in patients of end-stage kidney disease undergoing hemodialysis. Ultrasound Doppler is a sensitive modality for post-operative AVF assessment. The purpose of this study was to evaluate various objective ultrasonographic and color-Doppler criteria for early prediction of AVF outcomes. 
Methods and materials – A single-centre prospective cohort study over one year after obtaining ethical clearance. All patients undergoing native AVF creation surgery, and referred for routine post-operative around Doppler assessment were included. Patients were evaluated for fistula size, Cephalic vein area and diameter, AVF flow velocity, and flow rates at post-operative day 2, week 2, and week 6, respectively, and followed up to determine unassisted AVF outcomes. Initial findings were compared with subsequent outcomes. 
Results– Of our initial cohort of 40 patients, almost 75% developed AVF failure while 25% had successful unassisted AVF maturation. The two groups demonstrated significant differences in AVF flow rates as early as post-operative day 2. A cut-off value >246 ml/min predicted successful unassisted AVF maturation with a sensitivity of 80% and a specificity of 70%. Though the cephalic vein diameter at post-operative day 2 did not correlate strongly with the AVF outcome, when using a cut-off value of >3.4 mm and simultaneously testing with flow rate, the cumulative sensitivity increased to 92%. 
Conclusion– Ultrasound Doppler is a useful quantitative imaging modality in predicting AVF outcomes as early as post-operative day 2.  A flow rate of >246 ml/min and a cephalic vein diameter >3.4 mm are significant parameters for the early prediction of successful AVF outcomes.
DOI: 10.5285/070522ac6a5d4973a95c544beef714b4
title: ESA Greenhouse Gases Climate Change Initiative (GHG_cci): Column averaged carbon dioxide from OCO-2 generated with the FOCAL algorithm, version 10

description: This dataset contains column-average dry-air mole fractions of atmospheric carbon dioxide (XCO2), using the fast atmospheric trace gas retrieval for OCO2 (FOCAL-OCO2). The FOCAL-OCO2 algorithm which has been setup to retrieve XCO2 by analysing hyper spectral solar backscattered radiance measurements from NASA's Orbiting Carbon Observatory 2 (OCO-2) satellite. FOCAL includes a radiative transfer model which has been developed to approximate light scattering effects by multiple scattering at an optically thin scattering layer. This reduces the computational costs by several orders of magnitude. FOCAL's radiative transfer model is utilised to simulate the radiance in all three OCO-2 spectral bands allowing the simultaneous retrieval of CO2, H2O, and solar induced chlorophyll fluorescence. The product is limited to cloud-free scenes on the Earth's day side. This dataset is also referred to as CO2_OC2_FOCA. This version of the data (v10) was produced as part of the European Space Agency's (ESA) Climate Change Initiative (CCI) Greenhouse Gases (GHG) project (GHG-CCI+, http://cci.esa.int/ghg) and got co-funding from the Univ. Bremen and EU H2020 projects CHE (grant agreement no. 776186) and VERIFY (grant agreement no. 776810). When citing this data, please also cite the following peer-reviewed publications: M.Reuter, M.Buchwitz, O.Schneising, S.Noël, V.Rozanov, H.Bovensmann and J.P.Burrows: A Fast Atmospheric Trace Gas Retrieval for Hyperspectral Instruments Approximating Multiple Scattering - Part 1: Radiative Transfer and a Potential OCO-2 XCO2 Retrieval Setup, Remote Sensing, 9(11), 1159; doi:10.3390/rs9111159, 2017 M.Reuter, M.Buchwitz, O.Schneising, S.Noël, H.Bovensmann and J.P.Burrows: A Fast Atmospheric Trace Gas Retrieval for Hyperspectral Instruments Approximating Multiple Scattering - Part 2: Application to XCO2 Retrievals from OCO-2, Remote Sensing, 9(11), 1102; doi:10.3390/rs9111102, 2017
DOI: 10.5281/zenodo.7543546
title: Highly time−resolved PM2.5 data over Xi'an, China

description: Chemical species of high−time resolution PM<sub>2.5</sub> collected during wintertime in Xi’an, China, a typical city in the northwest region, representative of relatively serious air pollution in China.
DOI: 10.5281/zenodo.7543545
title: Highly time−resolved PM2.5 data over Xi'an, China

description: Chemical species of high−time resolution PM<sub>2.5</sub> collected during wintertime in Xi’an, China, a typical city in the northwest region, representative of relatively serious air pollution in China.
DOI: 10.21227/5f0e-5y27
title: Multimedia - A Multi-Focal Dynamic SLAM

description: In order to achieve wider perceptual field of view, longer measurement distance, and higher positioning accuracy, a multi-focal dynamic visual simultaneous localization and mapping (SLAM) is proposed in this paper. The definition of multi-focal stereo and the camera calibration procedure are first presented. The number of extracted and matched features will decrease as a result of the big scale difference of multi-focal images, which will impair the positioning accuracy of visual SLAM (VSLAM). Then, an effective feature extraction and matching method based on adaptive image pyramids is given, and the matched features are triangulated to obtain their depth. The traditional VSLAM approaches are predicated on the fundamental premise that the environment is static, which causes the positioning and mapping accuracy being completely unreliable in a dynamic environment. A deep learning segmentation method is adopted to obtain priori dynamic objects, while multi-view geometry, regional feature flow, and inverse perspective mapping are combined to verify dynamic objects and eliminate dynamic features. These methods are integrated with multi-focal cameras to realize multi-focal dynamic SLAM (MF-DynaSLAM). MF-DynaSLAM is compatible with both same-focal and multi-focal stereo, and the performance of the proposed method are evaluated on KITTI benchmark and self-built datasets. The suggested adaptive image pyramids can boost the number of matched features by 85.36% when the focal length ratio of two images is 2.1. Comparison to ORB-SLAM3 and DynaSLAM, our method has lower positioning absolute trajectory error (ATE). This approach is also real-time and operates at a processing rate of about 10FPS.
DOI: 10.6084/m9.figshare.21908004
title: Alignment-based protein mutational landscape prediction: doing more with less. Abakarova, Marquet, et al. 2023

description: This archive contains the data and tools associated with Alignment-based protein mutational landscape prediction: doing more with less, Abakarova et al. 2023. <strong>doi:</strong> https://doi.org/10.1101/2022.12.13.520259 All data concern the ProteiGym substitution benchmark available at: https://github.com/OATML-Markslab/ProteinGym. All predictions were computed using the alignment-based mutational outcome predictor GEMME, available at: http://www.lcqb.upmc.fr/GEMME. For questions, please contact elodie.laine@sorbonne-universite.fr. <br>
DOI: 10.6084/m9.figshare.21908052
title: hiseq_reads_R1.fastq.gz

description: paired-end reads <br>
DOI: 10.6084/m9.figshare.21908052.v1
title: hiseq_reads_R1.fastq.gz

description: paired-end reads <br>
DOI: 10.6084/m9.figshare.20502567.v4
title: Socio-cognitive determinants affecting insulin adherence/non-adherence in late adolescents and young adults with type 1 diabetes: a systematic review

description: This extended data for the systematic review entitled “ Socio-cognitive determinants affecting insulin adherence/non-adherence in late adolescents and young adults with type 1 diabetes: a systematic review” contains the following dataset: Appendix 1: PubMed search strategy. Appendix 2: The National Heart, Lung, and Blood Institute (NHLBI) quality assessment tool for observational cohort and cross-sectional studies. Appendix 3: Data extraction form adapted from the Cochrane Collaboration.
DOI: 10.5281/zenodo.7405074
title: Combined fluorescence fluctuation and spectrofluorometric measure-ments reveal a red-shifted, near-IR emissive photo-isomerized form of Cyanine 5

description: <strong>This folder contains all raw data underlying the results presented in a manuscript, accepted for publication in International Journal of Molecular Sciences, and entitled:</strong> <strong>Combined fluorescence fluctuation and spectrofluorometric measurements reveal a red-shifted, near-IR emissive photo-isomerized form of Cyanine 5</strong> <strong>Authored by:</strong> Elin Sandberg <sup>1</sup>, Joachim Piguet <sup>1</sup>, Haichun Liu <sup>1</sup> and Jerker Widengren <sup>1,</sup>* <sup>1</sup> Experimental Biomolecular Physics, Department of Applied Physics, Royal Institute of Technology (KTH), Stockholm, Sweden <sup>* </sup>To whom correspondence should be addressed. Email: jwideng@kth.se. Tel: +46-8-7907813 <strong>The data files are grouped into the different techniques used to generate them, and refer to the figures/tables in the manuscript where the extracted results are presented. </strong> <strong>ABSTRACT</strong> Cyanine fluorophores are extensively used in fluorescence spectroscopy and imaging. Upon continuous exciation, especially at excitation conditions used in single-molecule and super-resolution experiments, photo-isomerized states of cyanines easily reach population probabilies of around 50%. Still, effects of photo-isomerization are largely ignored in such experiments. Here, we studied the photo-isomerization of the pentamethine Cyanine 5 (Cy5) by two similar, yet complementary means to follow fluorophore blinking dynamics: fluorescence correlation spectroscopy (FCS) and transient state (TRAST) excitation-modulation spectroscopy. Additionally, we combined TRAST and spectrofluorimetry (spectral-TRAST), whereby emission spectra of Cy5 were recorded upon different rectangular pulse-train excitations. We also developed a framework for analyzing transitions between multiple emissive states in FCS and TRAST experiments, how the brightness of the different states is weighted, and what initial conditions that apply. Our FCS, TRAST and spectral-TRAST experiments showed significant differences in dark state relaxation amplitudes for different spectral detection ranges, which we attribute to an additional, red-shifted emissive photo-isomerized state of Cy5, not previously considered in FCS and single-molecule experiments. The photo-isomerization kinetics of this state indicate that it is formed under moderate excitation conditions, and its population and emission may thus deserve also more general consideration in fluorescence imaging and spectroscopy experiments.
DOI: 10.5281/zenodo.7405073
title: Combined fluorescence fluctuation and spectrofluorometric measure-ments reveal a red-shifted, near-IR emissive photo-isomerized form of Cyanine 5

description: <strong>This folder contains all raw data underlying the results presented in a manuscript, accepted for publication in International Journal of Molecular Sciences, and entitled:</strong> <strong>Combined fluorescence fluctuation and spectrofluorometric measurements reveal a red-shifted, near-IR emissive photo-isomerized form of Cyanine 5</strong> <strong>Authored by:</strong> Elin Sandberg <sup>1</sup>, Joachim Piguet <sup>1</sup>, Haichun Liu <sup>1</sup> and Jerker Widengren <sup>1,</sup>* <sup>1</sup> Experimental Biomolecular Physics, Department of Applied Physics, Royal Institute of Technology (KTH), Stockholm, Sweden <sup>* </sup>To whom correspondence should be addressed. Email: jwideng@kth.se. Tel: +46-8-7907813 <strong>The data files are grouped into the different techniques used to generate them, and refer to the figures/tables in the manuscript where the extracted results are presented. </strong> <strong>ABSTRACT</strong> Cyanine fluorophores are extensively used in fluorescence spectroscopy and imaging. Upon continuous exciation, especially at excitation conditions used in single-molecule and super-resolution experiments, photo-isomerized states of cyanines easily reach population probabilies of around 50%. Still, effects of photo-isomerization are largely ignored in such experiments. Here, we studied the photo-isomerization of the pentamethine Cyanine 5 (Cy5) by two similar, yet complementary means to follow fluorophore blinking dynamics: fluorescence correlation spectroscopy (FCS) and transient state (TRAST) excitation-modulation spectroscopy. Additionally, we combined TRAST and spectrofluorimetry (spectral-TRAST), whereby emission spectra of Cy5 were recorded upon different rectangular pulse-train excitations. We also developed a framework for analyzing transitions between multiple emissive states in FCS and TRAST experiments, how the brightness of the different states is weighted, and what initial conditions that apply. Our FCS, TRAST and spectral-TRAST experiments showed significant differences in dark state relaxation amplitudes for different spectral detection ranges, which we attribute to an additional, red-shifted emissive photo-isomerized state of Cy5, not previously considered in FCS and single-molecule experiments. The photo-isomerization kinetics of this state indicate that it is formed under moderate excitation conditions, and its population and emission may thus deserve also more general consideration in fluorescence imaging and spectroscopy experiments.
DOI: 10.17632/5ff6cj42g6.1
title: Peptide identified at different fermentation stages of sufu

description: Peptide identified at different fermentation stages of sufu based on de novo sequencing and database matching
DOI: 10.17632/3mtxc968z2.1
title: MSMS files of cassava roots

description: Polar extracts of cassava roots analysed with an Agilent Zorbax C18 column and Agilent QTof6560 in MSMS iterative mode.
DOI: 10.4121/21904632
title: Raw absorbance and fluorescence measurements of water samples during Nodularia spumigena 2021 bloom event on Lake Bante in Wilhelmshaven, Germany

description: Water sampling was conducted from the shoreline of Lake Bante in Wilhelmshaven, Germany. A very dense Nodularia spumigena bloom was taking place on the day of sampling 16 August 2021. Samples were kept in the dark and stored at 4 °C until further analyses were conducted. First the samples were pre-filtered through Whatman GF/F filters with a 0.7 µm mesh. Further filtration was done using Whatman Nuclepore Track-Etch 0.2 µm pore size membranes within 72 hours after field sampling. Sample filtrate was diluted using deionized water at a ratio 1:4 to mitigate inner filter effect and detector saturation. Excitation-emission matrices (EEMs) and absorbance measurements were done using a Horiba Aqualog benchtop fluorometer. Sample filtrate was placed in a 1 cm quartz cuvette that had been pre-rinsed 3 times before each measurement.
DOI: 10.4121/21878661.v1
title: Mixed MAPbI_(3-x)Br_x database for force field training

description: Crystal structures obtained during the on-the-fly MLFF heating molecular dynamics simulations of the MAPbX3 (X=I,Br) and its mix MAPbI1.5Br1.5 hybrid perovskites of Fykouras et.al. The automatically picked up reference structures set creates a minimal training database (containing total energies, forces, stress tensors and atomic coordinates) for machine-learning or classical force field development. See the README file for details about the structure and the applied electronic structure method. <br> <em>Data related to paper: Fykouras K., Lahnsteiner J., Leopold N., Tinnemans P., Panzer F., de Wijs G. A. ,Bokdam M., Grueninger H., and Kentgens A., "Disorder to order: how halide mixing in MAPbI3-xBrx perovskites restricts MA dynamics" ....... (2023)</em>
DOI: 10.17632/s54mpdznd3.1
title: Mechanical and Durability Properties of Concrete and Mortar Containing Locust Bean Pod Ash as Cement Replacement: A Review

description: This data is for a Review Article on the use of Locust Bean Pod Ash in concrete and mortar
DOI: 10.4121/19772815.v1
title: Data underlying the publication: Simulation of a fully coupled 3D GIA - Ice Dynamical model for the Antarctic Ice Sheet over a glacial cycle

description: This data is the result from multiple simulations of the evolution of the Antarctic Ice Sheet over the Last Glacial Cycle using a ice dynamical - 3D GIA model.
DOI: 10.17632/3x2476z3vf.1
title: 2022_07_22_scoping_non_bacteria_figure_S2

description: Figure S2. Surveillance programs that include the testing of bulk milk samples to detect diseases caused by agents other than bacteria in dairy herds. The list includes official or voluntary programs, either at the regional or national level. Inactive programs were also considered.
DOI: 10.17632/3x2476z3vf.2
title: 2023_01_09_scoping_non_bacteria_figure_S2

description: Figure S2. Surveillance programs that include the testing of bulk milk samples to detect diseases caused by agents other than bacteria in dairy herds. The list includes official or voluntary programs, either at the regional or national level. Inactive programs were also considered.
DOI: 10.17632/mfph32jczz.1
title: 2022_07_22_scoping_non_bacteria_table_S2

description: Table S2. Commercially available kits detected by our search strategy that can be used with bulk or pooled milk samples to detect herds with cattle infected by pathogens other than bacteria (as of July 15, 2021).
DOI: 10.17632/mfph32jczz.2
title: 2023_01_09_scoping_non_bacteria_table_S2

description: Table S2. Commercially available kits detected by our search strategy that can be used with bulk or pooled milk samples to detect herds with cattle infected by pathogens other than bacteria (as of July 15, 2021).
DOI: 10.17632/xk7b675z4v.1
title: 2022_07_22_scoping_non_bacteria_table_S1

description: Table S1. Characteristics of individual studies
DOI: 10.17632/xk7b675z4v.2
title: 2023_01_09_scoping_non_bacteria_table_S1

description: Table S1. Characteristics of individual studies
DOI: 10.17632/4zryss9zf7.1
title: Araripemys barretoi: Paleoecological analysis of a pelomedusoid Chelonia from the Lower Cretaceous of Araripe and Parnaíba basins, Brazil

description: Digitally prepared humerus of Araripemys barretoi, specimen UFRJ DG 74-R