cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17863/cam.93576
title: Research Data supporting "Biosensor for Multimodal Characterization of an Essential ABC Transporter for Next-Generation Antibiotic Research"

description: As the threat of antibiotic resistance increases, there is a particular focus on developing antimicrobials against pathogenic bacteria whose multidrug resistance is especially entrenched and concerning. One such target for novel antimicrobials is the ATP-binding cassette (ABC) transporter MsbA that is present in the plasma membrane of Gram-negative pathogenic bacteria where it is fundamental to the survival of these bacteria. Supported lipid bilayers (SLBs) are useful in monitoring membrane protein structure and function since they can be integrated with a variety of optical, biochemical, and electrochemical techniques. Here, we form SLBs containing Escherichia coli MsbA and use atomic force microscopy (AFM) and structured illumination microscopy (SIM) as high-resolution microscopy techniques to study the integrity of the SLBs and incorporated MsbA proteins. We then integrate these SLBs on microelectrode arrays (MEA) based on the conducting polymer poly(3,4-ethylenedioxy-thiophene) poly(styrene sulfonate) (PEDOT:PSS) using electrochemical impedance spectroscopy (EIS) to monitor ion flow through MsbA proteins in response to ATP hydrolysis. These EIS measurements can be correlated with the biochemical detection of MsbA-ATPase activity. To show the potential of this SLB approach, we observe not only the activity of wild-type MsbA but also the activity of two previously characterized mutants along with quinoline-based MsbA inhibitor G907 to show that EIS systems can detect changes in ABC transporter activity. Our work combines a multitude of techniques to thoroughly investigate MsbA in lipid bilayers as well as the effects of potential inhibitors of this protein. We envisage that this platform will facilitate the development of next-generation antimicrobials that inhibit MsbA or other essential membrane transporters in microorganisms. The research data in this dataset record support the publication by Bali and Guffick et al. in ACS Applied Materials and Interfaces, and refer to the experimental figures that are incorporated in the main paper and supporting information. Descriptions of the experimental details and statistical analyses are included in the Materials and Methods and figure legends of the paper.
DOI: 10.6084/m9.figshare.c.3602864_d2.v1
title: Additional file 3: of Dynamics of nuclear receptor gene expression during Pacific oyster development

description: Primer information used in qPCR analysis. Table of forward and reverse primer sequences for 34 Crassostrea gigas nuclear receptors and three reference genes including amplicon length (bp), annealing temperature, final primer concentration and MgCl2 concentration, primer efficiency, and accession number of receptor gene. (XLS 41Â kb)
DOI: 10.17863/cam.28052
title: Research data supporting "Simple and Robust Panchromatic Light Harvesting Antenna Composites via FRET Engineering in Solid State Host Matrices"

description: Steady state absorption and photoluminescence spectra. Transient absorption (TA) data associated with the measurement of FRET between dye complexes. Specifically pump energy dependence and spectral decomposition curves. Time correlated single photon counting traces used to determine transfer rates. Raw simulation data for solar concentrator and associated code/parameters varied.
DOI: 10.6084/m9.figshare.c.3602852_d3.v1
title: MOESM1 of Health workersâ   compliance to rapid diagnostic tests (RDTs) to guide malaria treatment: a systematic review and meta-analysis

description: Additional file 1. Search strategy.
DOI: 10.6084/m9.figshare.c.3602870_d3.v1
title: Additional file 1 of Comparing Alzheimer’s and Parkinson’s diseases networks using graph communities structure

description: Datasets: communities, networks, enrichments (ZIP available at https://dx.doi.org/10.6084/m9.figshare.2070124 ).
DOI: 10.6084/m9.figshare.c.3602825_d11.v1
title: Additional file 3: of In silico lineage tracing through single cell transcriptomics identifies a neural stem cell population in planarians

description: A ranked list of the top 1000 highly variable transcripts with means, coefficients of variation, and the hierarchical clustering group in which the average expression was highest. (XLSX 56 kb)
DOI: 10.15468/dl.q56d8m
title: Occurrence Download

description: A dataset containing 8457 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Greenland",
 "OccurrenceStatus is Present",
 "TaxonKey is Polypodiopsida"
 ]
}

 The dataset includes 8457 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037675-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.52272
title: Research data supporting "Computational Investigation of Copper Phosphides as Conversion Anodes for Lithium-Ion Batteries"

description: This record contains two entries: `CuP_results.ipynb` and `HarperCuPData.zip`. This dataset is used in the publication "Computational Discovery of Novel Copper Phosphide Conversion Anode for Lithium-Ion Batteries" and is comprised of files generated by the density functional theory code CASTEP, the code for generating density of states OptaDOS, and the matador code for data analysis from both CASTEP and OptaDOS. - `CuP_results.ipynb` is a Jupyter notebook that contains all of the analysis from the paper. This can also be found on GitHub at https://github.com/harpaf13/data.copper-phosphides and can be explored interactively on Binder https://mybinder.org/v2/gh/haperaf13/data.copper_phosphides/master. - `HarperCuPData.zip` contains the outputs of all calculations mentioned in the paper. When inflated, it has the following folder structure: - `Cu2P/`: contains 3 sub-folders `SOC`, `bandstructure` and `phonon` containing calculations on the novel Fm-3m Cu2P phase presented in this paper. - `Cu2P-Cu3P-phases/`: contains `.res` files for the structures of Cu2P and Cu3P phases discussed in the text. - `Cu2P-Ir2P-Rh2P-phases/`: contains `.res` files for the structures of Cu2P, Ir2P and Rh2P phases discussed in the text. - `Cu3P11-Cu2P7-CuP2/`: contains `.res` files for the structures of Cu3P11, Cu2P7 and CuP2 phases discussed in the text. - `CuPHull/`: contains all `.res` and `.castep` files used to create the convex hull of Cu-P. - `Ir2P/` and `Rh2P/`: both contain the outputs of spin-orbit corrected bandstructures for Ir2P and Rh2P. - `PPhonon/`: contains the output of phonon calculations on black phosphorus using the PBE+MBD* and SCAN functionals respectively. - `TDHull/`: contains the output of PBE phonon calculations performed on all low-lying structures on the Cu-P hull. - `VoltageCurve/`: contains all output of geometry optimization calculations for all the phases used to construct the voltage curves in the paper.
DOI: 10.6084/m9.figshare.c.3602825_d13.v1
title: Additional file 11: of In silico lineage tracing through single cell transcriptomics identifies a neural stem cell population in planarians

description: A table of raw read counts obtained for all 168 single cell samples aligned to the SmedASXL planarian transcriptome assembly. (TXT 23858 kb)
DOI: 10.17863/cam.33597
title: Research data supporting "Transient Topographical Dynamics of the Electroencephalogram Predict Brain Connectivity and Behavioural Responsiveness During Drowsiness"

description: This set contains 19 EEG recordings of different participants performing an auditory semantic task as they fell asleep. The participants were directed to not consume stimulants like coffee and to sleep 1–2 h less than normally before the experiment. All of the subjects were assessed as easy sleepers on the Epworth Sleepiness Scale (scores 7–14). The stimuli consisted of 96 spoken English words chosen from the CELEX lexical database. Half of the words denoted animals and the other half denoted objects. The subjects were asked to classify each stimulus in its respective category (animal or object) by pressing a button. The stimuli were presented through headphones, with an average distance of 8.4 s (minimum 6.2 s) between consecutive stimuli, as the subjects were lying with their eyes closed in a reclining chair. To facilitate drowsiness, the task was performed in a dark, acoustically and electrically shielded EEG room, and the participants were told that they could fall asleep at any point during the experiment, although they were asked not to stop responding deliberately while still awake. The electroencephalogram was continuously recorded at 500 samples per second from 64 Ag/AgCl electrodes positioned and labelled according to the extended 10/20 system, with Cz as a reference and including vertical and horizontal electrooculography channels.
DOI: 10.6084/m9.figshare.c.3602987_d2.v1
title: Additional file 4: of Genome-wide identification of rubber tree (Hevea brasiliensis Muell. Arg.) aquaporin genes and their response to ethephon stimulation in the laticifer, a rubber-producing tissue

description: Percent similarity within and between five subfamilies of the HbAQPs. (XLS 37Â kb)
DOI: 10.6084/m9.figshare.c.3602987_d4.v1
title: Additional file 2: of Genome-wide identification of rubber tree (Hevea brasiliensis Muell. Arg.) aquaporin genes and their response to ethephon stimulation in the laticifer, a rubber-producing tissue

description: List of the Phytozome accession numbers of the AQP genes identified in Arabidopsis (35) and poplar (55). (XLS 62Â kb)
DOI: 10.17863/cam.25734
title: Research data supporting the Report Survey of Structural Engineering Practice

description: Anonymised survey data for the Initial Findings of Survey of Structural Engineering Practice and associated publications from EP/P033679/2
DOI: 10.6084/m9.figshare.c.3602987_d5.v1
title: Additional file 8: of Genome-wide identification of rubber tree (Hevea brasiliensis Muell. Arg.) aquaporin genes and their response to ethephon stimulation in the laticifer, a rubber-producing tissue

description: qRT-PCR primers of the 19 HbAQP genes expressed in laticifers. (XLS 11Â kb)
DOI: 10.5286/isis.e.rb2510567
title: Structure and hydrogen bonding in protic ionic liquid fuel cell electrolytes

description: Green hydrogen production is ramping up industrially, and academic research into water electrolysers is increasingly markedly. To provide the most efficient means of converting green hydrogen back to electricity, polymer electrolyte fuel cells (PEFC) represent the state-of-the-art technology. However, the current form of PEFC faces a range of issues, such as poor water management, high costs of platinum group metal electrocatalysts and limited operation to 80 oC. High-temperature variants (160 °C), which replace Nafion® and water with polybenzimidazole and phosphoric acid have shown promise, but often their durability is limited by leaching and catalyst poisoning. This work focuses on unlocking an intermediate-temperature PEFC (120 °C), by exploring the liquid structure of protic ionic liquids (PIL) that have shown promise, both in terms of their proton conductivity and their influence of the overpotentials associated with the hydrogen oxidation reaction and the oxygen reduction reaction. By neutron scattering experiments on protiated, and partially and fully deuterated PILs, insight into the impact of temperature, stoichiometry, and anion side chain hydrophobicity on the nano-domains within these liquids can be realised. By improving our understanding of PIL nanostructure and the hydrogen-bonding networks throughout, a better selection and design of ionic-liquid-based electrolytes for elevated temperature devices can be achieved.
DOI: 10.5286/isis.e.rb2510259-1
title: Inelastic Neutron Scattering to probe H/D exchange in Zeolitic Imidazolate Frameworks for hydrogen isotope separations

description: Separating hydrogen and deuterium isotopes is presently among the most formidable separation challenges, due to their similar size, boiling point, and properties. Despite this there is a growing demand for deuterium, due to its use for isotope specific experiments and labelling studies in chemistry, biology, materials science, nuclear fusion, and medicine.[1] Current technologies to separate hydrogen (1H) and deuterium (2H), either require incredibly low temperatures (~30 K), have low D2/H2 separation efficiencies, or very low uptake capacities, making them inefficient. One approach is to employ materials that can exchange hydrogen and deuterium atoms. Metal organic frameworks (MOFs) are of particular interest for this, as they have higher concentrations of H atoms than other porous systems (e.g., zeolites or mesoporous silicas), whilst having an incredibly high surface area (&gt; 1500 m2 g-1), increasing the interactions between the framework host and any gaseous species.[1] Recently using a combination of 1H and 2H solid state magic-angle spinning NMR (ssNMR), we have shown that the MOF Zn-ZIF-8, has potential in exchanging, and storing hydrogen and deuterium. In this experiment we will compare the INS spectra of hydrogenated Zn-ZIF-8, and fully deuterated Zn-ZIF-8, with our Zn-ZIF-8 sample after H/D exchange, allowing us to quantify the H/D exchange, and determine where this exchange occurs.
DOI: 10.5286/isis.e.rb2510259
title: Inelastic Neutron Scattering to probe H/D exchange in Zeolitic Imidazolate Frameworks for hydrogen isotope separations

description: Separating hydrogen and deuterium isotopes is presently among the most formidable separation challenges, due to their similar size, boiling point, and properties. Despite this there is a growing demand for deuterium, due to its use for isotope specific experiments and labelling studies in chemistry, biology, materials science, nuclear fusion, and medicine.[1] Current technologies to separate hydrogen (1H) and deuterium (2H), either require incredibly low temperatures (~30 K), have low D2/H2 separation efficiencies, or very low uptake capacities, making them inefficient. One approach is to employ materials that can exchange hydrogen and deuterium atoms. Metal organic frameworks (MOFs) are of particular interest for this, as they have higher concentrations of H atoms than other porous systems (e.g., zeolites or mesoporous silicas), whilst having an incredibly high surface area (&gt; 1500 m2 g-1), increasing the interactions between the framework host and any gaseous species.[1] Recently using a combination of 1H and 2H solid state magic-angle spinning NMR (ssNMR), we have shown that the MOF Zn-ZIF-8, has potential in exchanging, and storing hydrogen and deuterium. In this experiment we will compare the INS spectra of hydrogenated Zn-ZIF-8, and fully deuterated Zn-ZIF-8, with our Zn-ZIF-8 sample after H/D exchange, allowing us to quantify the H/D exchange, and determine where this exchange occurs.
DOI: 10.15468/dl.8a9vm9
title: Occurrence Download

description: A dataset containing 5102 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Antiaris toxicaria (Pers.) Lesch."
 ]
}

 The dataset includes 5102 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0222923-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nwmlx3
title: Occurrence Download

description: A dataset containing 190 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Rhyzopertha dominica (Fabricius, 1792)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 190 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043770-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c2nke6
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Freshwater Lamprey Survey Data"
 ]
}

 The dataset includes 772 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005461-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nh2zbp
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Setonix brachyurus (Quoy & Gaimard, 1830)",
 "Year 2014-2024"
 ]
}

 The dataset includes 90 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044716-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.79hndc
title: Occurrence Download

description: A dataset containing 147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DecimalLatitude is greater than or equal to 54.5617",
 "DecimalLatitude is less than or equal to 63",
 "DecimalLongitude is greater than or equal to 4.63",
 "DecimalLongitude is less than or equal to 20",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2010",
 "TaxonKey is one of (Hylaeus annulatus, Hylaeus annulatus, 161548095, 110195695, Hylaeus annulatus (Linnaeus), Hylaeus annulatus (Linnaeus, 1758), 130506143, Hylaeus annulatus (Linnaeus, 1758), Hylaeus annulatus (Linnaeus, 1758), Hylaeus annulatus (Linnaeus, 1758), Hylaeus annulatus (Linnaeus, 1758), Hylaeus annulatus (Linnaeus, 1758), 157847101, Hylaeus annulatus (Linnaeus, 1758), Hylaeus (Hylaeus) annulatus (Linnaeus 1758) Linnaeus 1758, Hylaeus (Hylaeus) annulatus (Linnaeus 1758) Linnaeus 1758, Hylaeus (Hylaeus) annulatus (Linnaeus 1758) Linnaeus 1758, Hylaeus (Hylaeus) annulatus (Linnaeus 1758))"
 ]
}

 The dataset includes 147 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095985-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.i2bhxa
title: Occurrence Download

description: A dataset containing 1607 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clathrotropis (Benth.) Harms"
 ]
}

 The dataset includes 1607 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043775-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m24hgt
title: Occurrence Download

description: A dataset containing 19810 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ilex verticillata (L.) A.Gray"
 ]
}

 The dataset includes 19810 records from 243 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082782-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zjs843
title: Occurrence Download

description: A dataset containing 996 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "Geometry POLYGON((3.9708800263457205 47.91758211576017,5.454396509862202 47.91758211576017,5.454396509862202 49.40109859927665,3.9708800263457205 49.40109859927665,3.9708800263457205 47.91758211576017))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anser anser (Linnaeus, 1758)",
 "Year 1954-2020"
 ]
}

 The dataset includes 996 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140177-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zbhn4i
title: Occurrence Download

description: A dataset containing 46985718 species occurrences available in GBIF matching the query:
{
 "or" : [
 "Country is Colombia",
 "Country is Cuba",
 "Country is Puerto Rico",
 "Country is Mexico",
 "Country is Ecuador",
 "Country is Costa Rica",
 "Country is Panama",
 "Country is Brazil"
 ]
}

 The dataset includes 46985718 records from 4744 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043775-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s4u532
title: Occurrence Download

description: A dataset containing 299 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Andrena cinerea",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "HasCoordinate is true"
 ]
}

 The dataset includes 299 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004743-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.58a9fv
title: Occurrence Download

description: A dataset containing 423 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Physalis angulata L."
 ]
}

 The dataset includes 423 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184129-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.svh4r6
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is NCSM Mollusk Collection"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018356-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dqqpnw
title: Occurrence Download

description: A dataset containing 207 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Bhutanitis Atkinson, 1873"
 ]
}

 The dataset includes 207 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0179163-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.