cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.v4n4f8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina sphyraena Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.6841 -13.2744,44.9648 -13.45,44.9648 -12.0572,44.6243 -11.5921,43.9413 -11.6518,43.8001 -11.0974,43.4999 -10.8854,43.0582 -10.9337,42.804 -11.2068,42.7621 -11.9579,43.3325 -12.7962,44.5603 -12.8747,44.6841 -13.2744))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012674-250525065834625/datasets/export for details.
DOI: 10.15468/dl.arbrxd
title: Occurrence Download

description: A dataset containing 4008 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Leucanthemum ircutianum (Turcz.) DC.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 4008 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012675-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qefzvn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina sphyraena Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((40.2542 -7.2836,40.3029 -7.1504,35.9648 -7.1504,35.9648 -16.1504,40.6365 -16.1504,41.3042 -15.0287,41.3321 -14.414,41.0824 -13.7539,41.0579 -13.1811,41.2109 -10.9003,40.7985 -9.9904,40.2764 -9.7003,39.994 -8.7002,40.4062 -7.7189,40.2542 -7.2836))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012676-250525065834625/datasets/export for details.
DOI: 10.15468/dl.wsatcy
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paederia foetida L.",
 "Country is Viet Nam"
 ]
}

 The dataset includes 71 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012678-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dsymmf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina sphyraena Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((40.877 -22.4563,40.8172 -22.0642,40.48 -21.825,40.0801 -21.8881,39.8467 -22.172,39.8612 -22.5315,40.2159 -22.8442,40.6757 -22.7649,40.877 -22.4563))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012679-250525065834625/datasets/export for details.
DOI: 10.15468/dl.tybxy8
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melaleuca quinquenervia (Cav.) S.T.Blake",
 "Country is Indonesia"
 ]
}

 The dataset includes 6 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012680-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2nrm2s
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina sphyraena Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((43.4313 -17.5054,43.9059 -19.9421,43.0686 -21.0649,42.7023 -21.9969,43.1619 -23.5254,43.213 -24.5373,43.6164 -25.1504,44.9648 -25.1504,44.9648 -16.1504,43.978 -16.1504,43.9239 -16.5407,43.4313 -17.5054))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012681-250525065834625/datasets/export for details.
DOI: 10.15468/dl.8kf9fb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina sphyraena Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((42.8012 -16.5547,42.4342 -16.6376,42.2188 -17.038,42.391 -17.4288,42.6657 -17.5533,43.0375 -17.4752,43.2579 -17.0968,43.0959 -16.69,42.8012 -16.5547))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012682-250525065834625/datasets/export for details.
DOI: 10.15468/dl.h9epwc
title: Occurrence Download

description: A dataset containing 54287 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Paspalum dilatatum Poir.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 54287 records from 867 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012673-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f9dg4a
title: Occurrence Download

description: A dataset containing 1103515 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Belgium, Germany, Netherlands)",
 "TaxonKey is one of (Ondatra zibethicus (Linnaeus, 1766), Myocastor coypus (Molina, 1782))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1103515 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012662-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e3dq2w
title: Occurrence Download

description: A dataset containing 584 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dremomys rufigenis (Blanford, 1878)"
 ]
}

 The dataset includes 584 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012685-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.swqcpt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina sphyraena Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((40.3006 -16.7147,40.6365 -16.1504,35.9648 -16.1504,35.9648 -19.5556,36.0796 -19.4498,36.663 -19.2358,37.5966 -18.1093,38.5624 -17.638,39.3949 -17.5133,39.577 -17.186,40.3006 -16.7147))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012684-250525065834625/datasets/export for details.
DOI: 10.15468/dl.vadt2u
title: Occurrence Download

description: A dataset containing 110716 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solanum lycopersicum L."
 ]
}

 The dataset includes 110716 records from 684 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012655-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/t57m-8802
title: Parkes observations for project P960 semester 2025APRS_05

description: We aim to carry out receiver pointing and characterisation tests of Parkes receivers. Typically, these tests are carried out after the receiver package is installed, but time does not always allow for proper characterisation. Receivers for consideration include UWL, MARS and 13MM packages. In addition to cross-referencing C007 for flux calibration via pointing, we aim to conduct gain-elevation and system temperature experiments using the Moon, to ensure users of the Parkes Observatory have the most accurate information available for calibration purposes.
DOI: 10.6084/m9.figshare.28968977.v34
title: Syllogistic reasoning pdf v1-2-3-4 NEW

description: Logic and being
DOI: 10.15468/dl.2zekmh
title: Occurrence Download

description: A dataset containing 13417 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Arthrobacter Conn & Dimmick, 1947"
 ]
}

 The dataset includes 13417 records from 332 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016447-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.5qfttdzb6
title: Molecular epidemiology and risk factors for extended-spectrum β-lactamase-producing Enterobacterales in long-term care residents

description: Objectives: We aimed to assess the burden of extended-spectrum β-lactamase
 (ESBL)-producing Enterobacterales in Swiss long-term care facilities
 (LTCFs) to describe the molecular epidemiology, describe the
 intra-institutional and regional clusters of resistant pathogens, and
 identify independent institution- and resident-level factors associated
 with colonization. Design: Cross-sectional study. Setting and
 participants: From August to October 2019, we performed a point prevalence
 study among residents from 16 LTCFs in Western and Eastern Switzerland (8
 per region). Methods: Residents underwent screening for ESBL-producing
 Enterobacterales (ESBL-E); whole-genome sequencing (WGS) was performed. We
 gathered institution-level (eg, number of beds, staff-resident ratio,
 alcoholic hand rub consumption) and resident-level [eg, anthropometric
 data, time in facility, dependency, health care exposure, antibiotic
 treatment, proton-pump inhibitor (PPI) use] characteristics. Factors
 associated with colonization were identified using a generalized linear
 model. Results: Among 1185 eligible residents, 606 (51%) consented to the
 study. ESBL-E prevalence was 11.6% (70/606), ranging from 1.9% to 33.3%
 between institutions, with a median of 12.5% in the West and 6.9% in the
 East (P = .03). Among 59 Escherichia coli (from 58 residents), multilocus
 sequence type (ST) 131 was most common (n = 43/59, 73%), predominantly its
 subclone H30R1 (n = 37/43, 86%). WGS data identified multiple
 intra-institutional and regional clusters. Independent risk factors for
 ESBL carriage were previous ESBL colonization [adjusted odds ratio (aOR)
 23.5, 95% confidence interval (CI) 6.6–83.8, P &lt; .001), male gender
 (aOR 2.6, 95% CI 1.5–4.6, P = .002), and use of PPIs (aOR 2.2, 95% CI
 1.2–3.8, P = .01). Conclusions and implications: Overall ESBL-E prevalence
 in Swiss LTCF residents is low. Yet, we identified several clusters of
 residents with identical pathogens within the same institution. This
 implies that particularly affected institutions might benefit from
 targeted infection control interventions. PPI use was the only modifiable
 factor associated with carriage of ESBL producers. This study adds to the
 growing list of adverse outcomes associated with PPIs, calling for action
 to restrict their use in the long-term care setting.
description: Cross-sectional study in 16 nursing homes with chart review and
 rectal screening for ESBL producing bacteria.
description: Microsoft Office programs
DOI: 10.5061/dryad.dfn2z356z
title: Data from: Two complementary AI approaches for predicting UMLS semantic group assignment: heuristic reasoning and deep learning

description: Objective: Use heuristic, deep learning (DL), and hybrid AI methods to
 predict semantic group (SG) assignments for new UMLS Metathesaurus atoms,
 with target accuracy ≥ 95%. Materials and Methods: We used train-test
 datasets from successive 2020AA-2022AB UMLS Metathesaurus releases. Our
 heuristic “waterfall" approach employed a sequence of seven different
 SG prediction methods. Atoms not qualifying for a method were passed on to
 the next method. The DL approach generated BioWordVec and SapBERT
 embeddings for atom names, BioWordVec embeddings for source vocabulary
 names, and BioWordVec embeddings for atom names of the second-to-top nodes
 of an atom’s source hierarchy. We fed a concatenation of the four
 embeddings into a fully connected multi-layer neural network with an
 output layer of 15 nodes (one for each SG). Both methods were capable of
 estimating the probability that their predicted SG for an atom would be
 correct. We developed two hybrid SG prediction methods combining the
 strengths of heuristic and DL methods. Results: The heuristic waterfall
 approach accurately predicted 94.3% of SGs for 1,563,692 new unseen atoms.
 The DL accuracy on the same dataset was also 94.3%. The hybrid approaches
 achieved an average accuracy of 96.5%. Conclusion: Our study demonstrated
 that AI methods can predict SG assignments for new UMLS atoms with
 sufficient accuracy to be potentially useful as an intermediate step in
 the time-consuming task of assigning new atoms to UMLS concepts (CUIs). We
 showed that for SG prediction, combining heuristic methods and DL methods
 can produce better results than either alone.
description: A pipe delimited text file is provided which can be opened in any
 text editor or imported into any spreadsheet software. The attached
 README.txt file explains each column.
DOI: 10.5061/dryad.t4b8gtj6c
title: Sexual selection in seaweed? Testing Bateman’s principles in the red alga Gracilaria gracilis

description: In anisogamous species, sexual selection is expected to be stronger in
 males. Bateman’s principles state that the variance in (i) reproductive
 and (ii) mating success is greater for males and (iii) the relationship
 between reproductive success and mating success (the Bateman gradient) is
 also stronger for males than for females. Sexual selection, based on
 Bateman’s principles, has been demonstrated in animals and some
 angiosperms, but never in seaweed. Here we focus on the oogamous
 haploid-diploid rhodophyte Gracilaria gracilis in which previous studies
 have shown evidence for non-random mating, suggesting the existence of
 male-male competition and female choice. We estimated mating and
 reproductive success using paternity analyses in a natural population
 where up to 92% of fertilizations occurred between partners of that
 population. The results show that the variance in mating success is
 significantly greater in males than in females and that the Bateman
 gradient is positive only in males. Distance to female partners also
 explains a minor part of the variance in male mating success. Although
 there is no evidence for sexual dimorphism, our study supports the
 hypothesis that sexual selection occurs in G. gracilis, likely on male
 traits, even if we cannot observe, qualify, or quantify them yet.
description: This accompanying Excel file contains the genotypes of the males
 and the females of<em> Gracilaria gracilis </em>from the
 population GNH (Cape Gris-Nez, Northern France, 50°53’N, 1°35’E) sampled
 in August 2020. The following microsatellite loci were used for the
 genotyping : Gv2CT (Wattier et al., 1997), Gg121, Gg155, Gg173, Gg182,
 Gg216 (Luo et al., 1999), Ggrac_02, Ggrac_03, Ggrac_04, Ggrac_05,
 Ggrac_08, Ggrac_09, Ggrac_11 (Mauger et al., submitted).
DOI: 10.7280/d1dq3d
title: Data from: Sex-linked gene traffic underlies the acquisition of sexually dimorphic UV color vision in Heliconius butterflies

description: The acquisition of novel sexually dimorphic traits poses an evolutionary
 puzzle: How do new traits arise and become sex-limited? Recently acquired
 color vision, sexually dimorphic in animals like primates and butterflies,
 presents a compelling model for understanding how traits become
 sex-biased. For example, some Heliconius butterflies uniquely possess UV
 (ultraviolet) color vision, which correlates with the expression of two
 differentially tuned UV-sensitive rhodopsins, UVRh1 and UVRh2. To discover
 how such traits become sexually dimorphic, we studied Heliconius
 charithonia, which exhibits female-specific UVRh1 expression. We
 demonstrate that females, but not males, discriminate different UV
 wavelengths. Through whole-genome shotgun sequencing and assembly of the
 H. charithonia genome, we discovered that UVRh1 is present on the W
 chromosome, making it obligately female-specific. By knocking out UVRh1,
 we show that UVRh1 protein expression is absent in mutant female eye
 tissue, as in wild-type male eyes. A PCR survey of UVRh1 sex-linkage
 across the genus shows that species with female-specific UVRh1 expression
 lack UVRh1 gDNA in males. Thus, acquisition of sex linkage is sufficient
 to achieve female-specific expression of UVRh1, though this does not
 preclude other mechanisms, like cis-regulatory evolution from also
 contributing. Moreover, both this event, and mutations leading to
 differential UV opsin sensitivity, occurred early in the history of
 Heliconius. These results suggest a path for acquiring sexual dimorphism
 distinct from existing mechanistic models. We propose a model where gene
 traffic to heterosomes (the W or the Y) genetically partitions a trait by
 sex before a phenotype shifts (spectral tuning of UV sensitivity).
description: Transcriptome fasta files were produced using Trinity and
 stringtie assemblies of RNA-seq data derived from antennae, heads, legs,
 and mouthparts of adult male and female <em>Heliconius
 charithonia</em> butterflies. Reference genome fasta file of DNA
 extracted from a single <em>H. charithonia</em> female pupae
 was produced using Falcon and Canu (v1.6) assemblies that were combined
 into a single fasta file with Quickmerge. Behavioral
 data was collected by first training adult <em>Heliconius
 charithonia</em> butterflies to associate a sugar reward with 390 nm
 light. Butterflies were then given a choice between 380 nm and 390 nm
 lights at intensity ratios of 5:1, 1:1, and 1:5 where the first number
 indicates the rewarded light.
description: A variety of text file programs can be used to open the fasta
 (e.g. Windows Editor, Nano for Linux, and TextEdit
 for macOS) and gff files (IGV). Quicktime (and
 other programs) can be used to view the behavioral videos.
DOI: 10.5061/dryad.mkkwh714z
title: Hummingbird blood traits track oxygen availability across space and time

description: Predictable trait variation across environments suggests shared adaptive
 responses via repeated genetic evolution, phenotypic plasticity, or both.
 Matching of trait-environment associations at phylogenetic and individual
 scales implies consistency between these processes. Alternatively,
 mismatch implies that evolutionary divergence has changed the rules of
 trait-environment covariation. Here we tested whether species adaptation
 alters elevational variation in blood traits. We measured blood for 1,217
 Andean hummingbirds of 77 species across a 4,600 m elevational gradient.
 Unexpectedly, elevational variation in hemoglobin concentration ([Hb]) was
 scale independent, suggesting that physics of gas exchange, rather than
 species differences, determine responses to changing oxygen pressure.
 However, mechanisms of [Hb] adjustment did show signals of species
 adaptation: Species at either low or high elevations adjusted cell size,
 whereas species at mid-elevations adjusted cell number. This elevational
 variation in red blood cell number-versus-size suggests that genetic
 adaptation to high altitude has changed how these traits respond to shifts
 in oxygen availability.
description: We spent 2006–2020 collecting specimen-vouchered hematological
 data from 1,217 wild hummingbirds of 77 species, representing all 9
 clades, and spanning ~4,600 meters in elevation. We collected data on six
 blood parameters known to affect oxygen-carrying functions: three primary
 indices (Hemoglobin cocentration ([Hb]), Hematocric (Hct), and total red
 blood cell count (TRBC)), which we used these to calculate three secondary
 indices (mean cell volume (MCV), mean cell hemoglobin (MCH), and mean cell
 hemoglobin concentration (MCHC)). We compiled species elevational ranges
 using published data, field guides, and MSB specimen records. We
 characterized latitudinal and elevational climatic variation using
 WorldClim data. Data were processed and filtered in R using described
 methods (see main paper text) and the following scripts and workflows
 available on GitHub (https://github.com/jlwilliamson/ComparativeHummingbirdBlood). All data are linked to vouchered specimens housed at the <strong>Museum of Southwestern Biology (MSB)</strong> at the University of New Mexico, the <strong>Centro de Ornitología y Biodiversidad in Peru</strong>, and the <strong>Pontificia Universidad Católica de Chile in Chile</strong>. Specimen records are accessible in the Artcos database (https://www.arctosdb.org).
description: See README.txt file on GitHub (https://github.com/jlwilliamson/ComparativeHummingbirdBlood) for description of all files (scripts and analyses) included on the GitHub repository for reproducibility and extension of this work. All files were processed and analyzed using R.