cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/v9tgh977v7
title: Passive Immunity Provides Broad-spectrum Protection against Oral Infections with Various Pathogens Responsible for Hand, Foot and Mouth Diseases

description: Original data of the article "Passive Immunity Provides Broad-spectrum Protection against Oral Infections with Various Pathogens Responsible for Hand, Foot and Mouth Diseases".
DOI: 10.17632/vwd34rvphw
title: SWCNT Dataset

description: This is the dataset used for DNN training in the research paper:
Čanađija, M.: Deep learning framework for carbon nanotubes: mechanical properties and modeling strategies, Carbon (2021).
https://doi.org/10.1016/j.carbon.2021.08.091
It contains basic data about configurations and corresponding mechanical properties for all single-walled carbon nanotubes with diameter up to 4 nm. The dataset was obtained by MD simulations in LAMMPS using modified AIREBO potential. For all other details, please consult the above paper.
The column names are self-explanatory. 
In the case you find this dataset useful, please cite the above paper. Full bibliographic data can be found at the listed DOI link.
DOI: 10.6084/m9.figshare.10302212.v1
title: RAW DATA.xlsx

description: This is a raw dataset for the paper entitled "Carbogen gas-challenge BOLD fMRI in assessment of liver hypoxia after portal microcapsules implantation", which was accepted by PLOS ONE. The dataset contains the raw data of the deltaR2* value in the four treatments (PV1, PV2, PV3 and Sham) at different timepoint (DAY1, DAY2, DAY3 and DAY7). <br>
DOI: 10.6084/m9.figshare.22492795.v1
title: Supplementary File 16

description: Multiple sequence alignment and MrBayes options and parameter values of Agap genes, in Nexus format. Related to Extended Data Figure 4d.
DOI: 10.6084/m9.figshare.24212679.v1
title: Supplementary Material for: Intravenous immunoglobulin therapy induced Erythema multiforme in a patient with CLL

description: This case report discusses immunoglobulin-induced Erythema multiforme, a rare and understudied condition that requires further investigation. The report presents the case of a 69-year-old woman with a history of chronic lymphocytic leukemia, who developed an acute hypersensitivity reaction to the intravenous gamma globulin medication. The patient received IVIG to normalize and stabilize her immunoglobulin levels and reduce the risk of recurrent infections due to her immunodeficiency with predominantly antibody defects. However, after the second administration of the medication, the patient experienced an acute skin rash and was admitted to the hospital for treatment. The treatment plan included systemic desensitizing therapy, systemic antihistamine therapy, corticosteroid therapy, and local therapy. After a course of therapy, the patient's skin condition improved, and her overall well-being improved. However, due to the acute hypersensitivity reaction, the intravenous immunoglobulin (IVIG) therapy was discontinued. The multidisciplinary team of specialists concluded that the patient developed erythema multiforme. The discussion provides an overview of erythema multiforme (EM), including its causes, clinical presentation, diagnostic tools, and therapy principles. The discussion also describes the use of human IVIG preparations in treating various immunodeficient and inflammatory diseases, highlighting the importance of monitoring patients for adverse effects. The case of this patient underscores the potential risks associated with immunoglobulin therapy and emphasizes the need for healthcare providers to remain vigilant for adverse reactions. By promptly diagnosing and treating EM, healthcare providers can minimize its impact on patients' overall well-being.
DOI: 10.6084/m9.figshare.25695990.v5
title: Dataset of sustainable consumption in Vietnam

description: The Norm Activation Model questionnaire incorporates additional variables that assess the influence of personal norms, awareness of consequences, ascription of responsibility, and care for future generations on sustainable consumption practices.
DOI: 10.6084/m9.figshare.26096650.v1
title: Gap free T2T chromosome level genome assembly for plant species Phragmites australis

description: Gap free T2T chromosome level genome assembly for plant species Phragmites australis assembled with PacBio HiFi reads, and scaffolded with HiC contacts. The genome size is 920Mbp.
DOI: 10.6084/m9.figshare.3550539.v1
title: Appendix A. Details of the calculation of energy values of prey organisms and the mass-based daily prey consumptions by Japanese trout and a table showing caloric- and mass-based values of prey ingested by trout.

description: Details of the calculation of energy values of prey organisms and the mass-based daily prey consumptions by Japanese trout and a table showing caloric- and mass-based values of prey ingested by trout.
DOI: 10.6084/m9.figshare.7771184.v2
title: Real-time deformability cytometry reference data

description: This dataset consists of four exemplary real-time fluorescence and deformability cytometry measurements. The HDF5-files can be opened with dclab [1] or Shape-Out [2].<br><br><b>calibration_beads.rtdc</b><br>The calibartion beads (8 Peaks, PolyAN) consist of eight bead populations with different mixtures of fluorophores.<br><br><br><b>CD34_HSPC.rtdc</b><br>Hematopoietic stem and progenitor cells (HSPCs) were obtained using apheresis. The cells were tagged with a fluorescently labeled antibody that binds to the CD34 transmembrane protein. CD34-positive HSPCs are gated with `fl3_max &gt; 90`. Set `area_ratio &lt; 1.05` to remove aggregates. Data were used in [3].<br><br><br><b>leukocytes.rtdc</b><br>The leukocyte population (white blood cells) of this blood sample can be visualized by setting `aspect &lt; 2` and `area_ratio &lt; 1.05`. For more information, see e.g. [4].<br><br><br><b>reticulocytes.rtdc</b><br>Blood contains mostly red blood cells (RBCs) and about 1% reticulocytes (which develop into mature RBCs). Reticulocytes contain ribosomal RNA which was stained with Syto13 for this measurement. Set `area_ratio &lt; 1.05` to remove aggregates. Data were used in [3].<br><br><br>[1] https://github.com/ZellMechanik-Dresden/dclab<br><br>[2] https://github.com/ZellMechanik-Dresden/ShapeOut<br><br>[3] Rosendahl et al., "Real-time fluorescence and deformability cytometry". Nature Methods, 15(5):355–358, 2018. doi:10.1038/nmeth.4639.<br><br>[4] Toepfner et al., "Detection of human disease conditions by single-cell morpho-rheological phenotyping of whole blood". eLife, 7:e29213, 2017. doi:10.1101/145078.<br><br><br>SHA256 sums:<br>08c2ef13eed903ef0f9e451727ab8484df09b5d3b39227dab726e0164dcbe244 calibration_beads.rtdc<br>663b44a9db88d85996500045489e37a317cf115719223a531d617f8e3d450e79 CD34_HSPC.rtdc<br>68bd538b42ffb990f1db52d5f3b21f37c9aff31208ab284f3910fd6872c40fdb leukocytes.rtdc<br>5c323ea75bf7eeb2a28d922730772d50270dd872d6957e60d6062663f3628fb3 reticulocytes.rtdc
DOI: 10.17632/mywdxyfkwr
title: CAPIRU GROUP GIS 2021

description: This dataset is the MPK package that contains the shapefiles of the 2016-2020 mapping of the Capiru Group, Southern Ribeira Belt (Brazil). A detailed geological mapping of this unit in scales varying from 1:5,000 to 1:25,000 was performed during 2016 to 2020. Original interpretations and the new geological map were recently compiled and integrated with the past field data of the state (MINEROPAR) and national (CPRM) geological surveys, and to unpublished and recent published studies. This compilation represents the most updated geological GIS synthesis of the Capiru Group.
DOI: 10.6084/m9.figshare.12456602.v2
title: Meta data.xlsx

description: The database consists of 198 species and 352 paired leaf and root decomposition data from 88 sites and 52 published studies, located from 38.75°S to 68.63°N with mean annual temperature (MAT) ranging from -10.4 to 28.0 °C and mean annual precipitation (MAP) from 110 to 4100 mm. The dataset covers major biomes including tropical forest, subtropical forest, temperate forest, boreal forest, grassland, desert and tundra.
DOI: 10.6084/m9.figshare.26181599.v3
title: Exploring user acceptance of online virtual reality exhibition technologies: A case study of Liangzhu Museum

description: This study proposes a model, grounded in the technology acceptance model, to investigate user acceptance of online virtual reality (VR) museum exhibitions. Leveraging the online VR exhibition at Liangzhu Museum as a case study, data were collected from 313 participants and analyzed using partial least squares - structural equation modeling with Smart PLS.
DOI: 10.6084/m9.figshare.27605397.v1
title: Supplementary Material for: C4b-Binding Protein and Factor H Inhibit Inflammasome Activation during Group A Streptococci Infection in Human Cells.

description: Introduction. Streptococcus pyogenes (Group A Streptococcus; GAS) is a pathogen that causes over half a million deaths annually worldwide. Human immune cells respond to GAS infection by activating the NLRP3 inflammasome that leads to pro-inflammatory cytokines release which acts to control infection. We investigated the role of C4b-binding protein (C4BP) and Factor H (FH) in the inflammasome response to GAS, as they are recruited by GAS to prevent complement deposition and limit phagocytosis.
Methods. Inflammasome response was investigated using isolated primary human cells and the GAS-AP1 strain. Cytokine responses were evaluated by ELISA. C4BP internalisation was investigated using confocal microscopy. Western blotting was used to evaluate the activation of NLRP3 inflammasome components.
Results. IL-1β release, induced by GAS-AP1, was inhibited by FH which interferes with priming of human cells. In contrast, C4BP restricted the IL-1β response with no effect on cell priming. C4BP was engulfed by cells together with bacteria and excluded from low-pH vesicles, but localised within the cytosol and near the ASC speck inflammasome complex. C4BP did not inhibit either the inflammasome complex assembly or caspase-1 activation. However, C4BP limited the cleavage of gasderminD N-terminal fragments by interfering with caspase-1 enzymatic activity.
Conclusion. Our results provide new insights on the effect of FH and internalised C4BP to control GAS sensing by inflammasomes.
DOI: 10.6084/m9.figshare.28041071.v1
title: All details of 360 individuals

description: All details of 360 individuals
DOI: 10.6084/m9.figshare.28731062.v2
title: Antiviral activity of five advanced materials against mpox virus

description: Infectious titers of vaccinia virus after 24 h of viral contact with five advanced materials by the TCID50/mL method. The control is the virus that has not been exposed to any material.
DOI: 10.17632/5p7sk323wy
title: Wildland-Urban Interface (WUI) maps of Poland

description: The dataset contains six Wildland-Urban Interface (WUI) maps of Poland, based on different radii used to calculate building density and forest cover share. The maps are based on the WUI definition of US Federal Register (USDA and USDI, 2001) as operationalized by (Radeloff et al., 2005), which distinguishes two kinds of WUI: intermix, where housing intermingle with wildland vegetation, and interface, where settlement abuts the wildland areas. Either WUI type requires a housing density higher than 6.17 houses/km2 (1 house/40 acres in the US context). In intermix WUI, there has to be also &gt; 50% wildland vegetation, while the interface WUI, has &lt; 50% wildland vegetation but is within 2.4 km of a wildland vegetation patch larger &gt; 5 km2. As there are visible differences in building density and forest cover share calculations for different radii, we applied a circular moving window algorithm testing six radii: 100, 250, 500, 750, 1000 and 1500 meters, which resulted in six respective maps. Smaller radii have the advantage that even small groups of buildings are mapped as WUI and focus on ecological processes that operate on short distances (e.g., noise pollution), whereas larger radii have the advantage that they focus on larger WUI areas, and reflect ecological processes operating at longer distances better (e.g., habitat fragmentation for wildlife species with large territories. The recommended WUI map, for those, who are not interested in a specific application is the one based on 500 m. More details on the consequences of using a particular map are shown in the research paper linked to this dataset.

Acknowledgments
The study was supported by the National Science Centre, Poland, contract no. UMO-2019/35/D/HS4/00117 and by the NASA Land Use and Land Cover Change Program.
DOI: 10.17632/t4ycf4425k
title: Anal atresia case series

description: The series of prenatal ultrasound images was created by experts in fetal-maternal medicine for educational purposes and to aid in developing AI recognition models. The current dataset contains prenatal ultrasound images of the cases with signs suggestive of anal malformations during the second-trimester screening. Follow-up images are provided if available, as well as the pregnancy outcome and postnatal findings of anal atresia. The presented cases were described in an Original Article published in the Taiwanese Journal of Obstetrics and Gynecology titled "A practical method for prenatal diagnosis of anal atresia by second trimester ultrasound screening - A retrospective study" by Ko et al. The primary objective of the article was to evaluate the performance of ultrasound screening for anorectal malformations during mid-trimester routine anatomical scans in a primary care fetal medicine clinic.
DOI: 10.6084/m9.figshare.1363839.v2
title: Dataset - An exploration based cognitive bias test for mice: effects of handling method and stereotypic behaviour

description: Dataset from the manuscript "An exploration based cognitive bias test for mice: effects of handling method and stereotypic behaviour" Janja Novak, Jeremy D. Bailoo, Luca Melotti, Jonas Rommen, Hanno Würbel
DOI: 10.6084/m9.figshare.11803881.v1
title: Supplemental Files - Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered.

description: Strain 9 <i>D. virilis</i> genome and strain 160 genome used for mapping recombination events in the multiplex shotgun genotyping protocol listed by Muller element. For more information, please refer to "Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered" in Mobile DNA published by the listed authors.<br>
DOI: 10.6084/m9.figshare.28872377.v1
title: Quantum Simulation of Anti-Matter to Dark Energy Transition

description: This OpenQASM 2.0 circuit models the quantum transition of anti-matter into dark energy through a time-dependent conversion mechanism. The simulation initializes the anti-matter qubit in an excited state (|1⟩), representing available energy. A control qubit is placed in superposition to act as a temporal or evolutionary factor. A conditional phase rotation (CRZ gate) simulates the η_conversion(t) efficiency, influenced by an example decay parameter γ = π/4. The energy from anti-matter is then conditionally transferred to a "dark energy register" using a CNOT gate. The final Hadamard operation and measurement analyze the conversion result, allowing quantum interference to reveal the effectiveness of transition. This model can serve as a foundational framework for exploring anti-time energy theories and vacuum energy fluctuations.
DOI: 10.6084/m9.figshare.3428141.v1
title: Aircraft parameters.xlsx

description: Aircraft parameters of same planes<br>
DOI: 10.6084/m9.figshare.7885703.v2
title: Chip data for a Duroc pig population

description: Duroc were genotyped using either the Illumina PorcineSNP60 BeadChip or GeneSeek GGP-Porcine chip.
DOI: 10.17632/4dsy9vxxgx
title: Airport Data for Artificial Intelligence Forecasting of Air Passenger Throughput

description: The dataset comprises 974 daily observations for each of the five selected major airports, namely Hartsfield-Jackson Atlanta International Airport (ATL), Denver International Airport (DEN), O'Hare International Airport (ORD), Los Angeles International Airport (LAX), and Dallas/Fort Worth International Airport (DFW), encompassing the period from February 15, 2020, to October 15, 2022.  Data observations include daily airport passenger flow from aggregated airport TSA security checkpoint throughput (pax).  Additionally, anonymized Google measured visitor numbers to retail & recreation, grocery & pharmacy stores, parks, transit stations, workplaces, and duration of stay in residential locations (retail, groc, park, transit, work, resident) for the immediate surrounding county where each of the sample airports are located (Fulton, GA for ATL; Denver, CO for DEN; Tarrant, TX for DFW; Los Angeles, CA for LAX; and Cook, IL for ORD) are included, which has been normalized by comparing relative change to baseline days before the pandemic outbreak.  Google Trends data denoting the airport's metropolitan statistical area's search intensity for the keywords "COVID", "flight" and "airport" (srch_cov, srch_flght, srch_airprt) are included.  Lastly, county data for each respective airport for daily COVID-19 related deaths and COVID-19 confirmed cases obtained from the COVID-19 Data Repository by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University (cov_death, cov_case) are included.
DOI: 10.17632/6hvz627mf6
title: gamification_sciences

description: gamification_sciences
DOI: 10.6084/m9.figshare.15162786.v1
title: Table S8.xlsx

description: Plasma protein binding of PF-07304814 or PF-00835231 in plasma, liver microsomes and S9.
DOI: 10.6084/m9.figshare.21674723.v2
title: Ornithischian forelimb musculoskeletal models

description: Multi-body dynamics models of the forelimbs of ornithischians dinosaurs featured in the paper: <br> Dempsey M, Maidment SCR, Hedrick BP, Bates KT. 2023 Convergent evolution of quadrupedality in ornithischian dinosaurs was achieved through disparate forelimb muscle mechanics. Proc. R. Soc. B 290: 20222435. <br> https://royalsocietypublishing.org/doi/10.1098/rspb.2022.2435 <br> Third-party bone geometries that are included in this download were made available with the permission of the host institutions of the fossil material. Please see ESM1 Table S2 of the above article for full specimen and scan details.
DOI: 10.6084/m9.figshare.25466356.v1
title: CHM for anxiety disorders - dataset

description: This is the dataset of the article "Chinese Herbal Medicine for Anxiety Disorders and Obsessive-Compulsive Disorder: A Systematic Review with Meta-Analysis"
DOI: 10.6084/m9.figshare.6265679.v1
title: Patient34

description: Male Patient with 189 slice of pulmonary embolism CT-Angiography.
DOI: 10.6084/m9.figshare.7497086.v1
title: S1 Dataset. Patients' data on admission and discharge

description: Patients' data on admission and discharge: patient ID and characteristics, hospital, type of prescription, medical department, reason for hospitalization, comorbidities, patient classification system (PCS), adjusted Charlson Comorbidity Index (CCI), length of hospital stay, number of medications prescribed.
DOI: 10.17632/7j485t986v
title: Machine learning analysis of the bleomycin-mouse model reveals the compartmental and temporal inflammatory pulmonary fingerprint
DOI: 10.4121/uuid:2068ddc3-1726-4d9d-bbe7-37477767b220
title: Reconstructed data on the 1809 historic flood event of the Rhine river

description: In this study, the historic flood event of the Rhine river was reconstructed with the use of a hydraulic model. Therefore, the 1800 bathymetry as well as land use was reconstructed based on old maps. A 1D-2D coupled model was set-up which was used to create training data to set up an Artificial Neural Network. Measured water levels at Pannerden and Nijmegen were used to predict corresponding maximum discharge at Lobith
DOI: 10.6084/m9.figshare.27040723.v1
title: York University Soil Sample Data, District of Cochrane, Ontario, Canada

description: This spreadsheet contains soil sample data (at the subplot and site level) corresponding to samples extracted via field campaigns for York University during September 2018, August 2019 and August-September 2021 in the District of Cochrane in northern Ontario, Canada.<br>Soil properties consist of total carbon, carbon-to-nitrogen ratio, clay component, organic matter, and bulk density. These samples were obtained principally from the 5-15 cm depth layer of mineral soil. Organic matter was not assessed for samples collected during 2018, and clay component information was incomplete for some samples obtained during 2018 and 2019. Also noted at each subplot and site were the land cover type and observed dominant tree species.
DOI: 10.6084/m9.figshare.5554612.v1
title: Experiment HaLT-SubjectH-160722-6States

description: Experiment in which subject performed 6 imageries of left and right hand motion, left and right leg motion, tongue motion, and a passive state.
DOI: 10.17632/thw79mr9cg
title: Association Between Supplemental Nutrition Assistance Program (SNAP) and Cost-Related Medical Care Delays in Pediatric Atopic Dermatitis: A Cross-Sectional Analysis of the National Health Interview Survey, 1999-2018 Supplementary File

description: Supplementary File for Association Between Supplemental Nutrition Assistance Program (SNAP) and Cost-Related Medical Care Delays in Pediatric Atopic Dermatitis: A Cross-Sectional Analysis of the National Health Interview Survey, 1999-2018
DOI: 10.6084/m9.figshare.1004171.v4
title: Identified plant remains from Ballinglanna North 1, Cork, Ireland (open dataset)

description: .csv file with identified charred plant remains from archaeobotanical samples taken during excavation of a multi-period site (Bronze Age, early medieval and post-medieval) at Ballinglanna North 1, Cork, Ireland.
DOI: 10.6084/m9.figshare.14347637.v1
title: Univ_of_Georgia_Pazdro_MURGIGV01_20190530_FinalReport.txt

description: Genotype data from GeneSeek
DOI: 10.6084/m9.figshare.17648891.v1
title: Data.rar

description: SI table
DOI: 10.6084/m9.figshare.20218415.v1
title: Deep Learning model Layers for Soybean Cyst Eggs Detection

description: Abstract The soybean cyst nematode (SCN), Heterodera glycines, is the most damaging pathogen of soybeans in the United States. To assess the severity of nematode infestations in the field, SCN egg population densities are determined. Cysts (dead females) of the nematode must be extracted from soil samples and then ground to extract the eggs within. Sucrose centrifugation commonly is used to separate debris from suspensions of extracted nematode eggs. We present a method using OptiPrep as a density gradient medium with improved separation and recovery of extracted eggs compared to the sucrose centrifugation technique. Also, computerized methods were developed to automate the identification and counting of nematode eggs from the processed samples. In one approach, a high-resolution scanner was used to take static images of extracted eggs and debris on filter papers, and a deep learning network was trained to identify and count the eggs among the debris. In the second approach, a lensless imaging setup was developed using off-the-shelf components, and the processed egg samples were passed through a microfluidic flow chip made from double-sided adhesive tape. Holographic videos were recorded of the passing eggs and debris, and the videos were reconstructed and processed by custom software program to obtain egg counts. The performance of the software programs for egg counting was characterized with SCN-infested soil collected from two farms, and the results using these methods were compared with those obtained through manual counting.
DOI: 10.6084/m9.figshare.22820741.v1
title: Supplemental Table S1: Data editing steps for the phenotypes for daily milk yield data and numbers of cows, lactations, and records preserved after each data editing step.

description: Investigating the relationship between fluctuations in daily milk yield as resilience indicators and health traits in Holstein cattle