cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2fwwrz
title: CCDC 2261132: Experimental Crystal Structure Determination

description: Related Article: Zuo-Bei Wang, Xin Ye, Jie Yang, Yong-Hui Zhang, Zi-Ang Nan, Yi-Fan Wang, You-Gui Huang, Wei Wang|2024|Prog. Solid State Chem.|76|100496|doi:10.1016/j.progsolidstchem.2024.100496
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.c.3820504_d3.v1
title: Additional file 3: of MAPK-triggered chromatin reprogramming by histone deacetylase in plant innate immunity

description: List of H3K9 hyper- and hypo-acetylated genes after flg22 treatment. (XLSX 60Â kb)
DOI: 10.6084/m9.figshare.c.3820504_d2.v1
title: Additional file 2: of MAPK-triggered chromatin reprogramming by histone deacetylase in plant innate immunity

description: List of HD2B target genes in mock and flg22 conditions. (XLSX 167Â kb)
DOI: 10.5517/ccdc.csd.cc2jnylr
title: CCDC 2343835: Experimental Crystal Structure Determination

description: Related Article: Jieli Lin, Shihua Liu, Shunlin Zheng, Hansjörg Grützmacher, Cheng-Yong Su, Zhongshu Li|2024|Chemical Science|15|20030|doi:10.1039/D4SC06462C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.c.3823069_d3.v1
title: Additional file 3: of Genomic prediction in contrast to a genome-wide association study in explaining heritable variation of complex growth traits in breeding populations of Eucalyptus

description: Estimates of additive genetic variance (σ2a) and residual variance (σ2e) obtained with different prediction methods, different position-based SNP sampling methods and sampling related or unrelated individuals in the E. benthamii and E. pellita breeding populations. (XLS 55 kb)
DOI: 10.5517/ccdc.csd.cc2ly771
title: CCDC 2411373: Experimental Crystal Structure Determination

description: Related Article: Youzi Da|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.my8fav
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caulolatilus chrysops (Valenciennes, 1833)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039252-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13987001
title: Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics: fastq & bam files - Sample S3_Col_R

description: You can find here the fastq and bam files related to the datasets used in the publication: 

In this particular upload, you can find the fastq (version 1) and bam (version 2) files of the two replicates of sample S3_Col_R (A416371)

Valdeolivas, A., Amberg, B., Giroud, N. et al. Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics. npj Precis. Onc. 8, 10 (2024). https://doi.org/10.1038/s41698-023-00488-4
DOI: 10.5281/zenodo.13987002
title: Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics: fastq files - Sample S3_Col_R

description: You can find here the fastq files related to the datasets used in the publication: 

In this particular upload, you can find the fastq files of the two replicates of sample S3_Col_R (A416371)

Valdeolivas, A., Amberg, B., Giroud, N. et al. Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics. npj Precis. Onc. 8, 10 (2024). https://doi.org/10.1038/s41698-023-00488-4
DOI: 10.5281/zenodo.14512914
title: Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics: fastq & bam files - Sample S3_Col_R

description: You can find here the fastq and bam files related to the datasets used in the publication: 

In this particular upload, you can find the fastq (version 1) and bam (version 2) files of the two replicates of sample S3_Col_R (A416371)

Valdeolivas, A., Amberg, B., Giroud, N. et al. Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics. npj Precis. Onc. 8, 10 (2024). https://doi.org/10.1038/s41698-023-00488-4
DOI: 10.6084/m9.figshare.c.3823192_d7
title: Additional file 7: of Normal breast tissue DNA methylation differences at regulatory elements are associated with the cancer risk factor age

description: Complete results from eFORGE analysis of age-related CpGs (nâ  =â  787). (XLSX 136 kb)
DOI: 10.6084/m9.figshare.c.3823177_d3.v1
title: Additional file 3: Table S4. of LipidMatch: an automated workflow for rule-based lipid identification using untargeted high-resolution tandem mass spectrometry data

description: Lipid Annotations for Red Cross Plasma Using Three Open Source Software. This excel workbook contains a worksheet for lipid annotations in negative polarity and a worksheet for lipid annotations in positive polarity. Lipids were annotated using LipidMatch, MS-DIAL, and Greazy. For comparison, the resulting identifications were aligned to features determined using MZmine. Data was acquired using iterative exclusion data-dependent top5 (IE-ddMS2-top5) analysis of 6 injections of Red Cross blood plasma. (XLSX 977Â kb)
DOI: 10.6084/m9.figshare.c.3823192_d8.v1
title: Additional file 8: of Normal breast tissue DNA methylation differences at regulatory elements are associated with the cancer risk factor age

description: Complete results from LOLA analysis of age-related CpGs (nâ  =â  787). (XLSX 71 kb)
DOI: 10.6084/m9.figshare.c.3823192_d8
title: Additional file 8: of Normal breast tissue DNA methylation differences at regulatory elements are associated with the cancer risk factor age

description: Complete results from LOLA analysis of age-related CpGs (nâ  =â  787). (XLSX 71 kb)
DOI: 10.6084/m9.figshare.c.3823177_d3
title: Additional file 3: Table S4. of LipidMatch: an automated workflow for rule-based lipid identification using untargeted high-resolution tandem mass spectrometry data

description: Lipid Annotations for Red Cross Plasma Using Three Open Source Software. This excel workbook contains a worksheet for lipid annotations in negative polarity and a worksheet for lipid annotations in positive polarity. Lipids were annotated using LipidMatch, MS-DIAL, and Greazy. For comparison, the resulting identifications were aligned to features determined using MZmine. Data was acquired using iterative exclusion data-dependent top5 (IE-ddMS2-top5) analysis of 6 injections of Red Cross blood plasma. (XLSX 977Â kb)
DOI: 10.6084/m9.figshare.c.3823207_d1.v1
title: Additional file 1: of Early warning signal for dengue outbreaks and identification of high risk areas for dengue fever in Colombia using climate and non-climate datasets

description: Supplementary 1.Cross-correlograms of climate datasets and DIP. Supplementary 2. Model specifications. Supplementary 3. Climate factors and DIP over time by department. Supplementary 4. The CRF index and DIP over time by department. Supplementary 5. Identification of high risk areas for dengue fever. Supplementary 6. EWS for 11 departments during the study period. Supplementary 7. EWS for 11 departments in 2015. (ZIP 2317 kb)
DOI: 10.18150/7r3xkq
title: DFT Calculation Data on the Electronic Properties of As-covered GaN(0001) Surfaces

description: This dataset contains DFT calculation results, which serve as the source data for the article "Valence-Band Electronic Structure of As-Terminated GaN(0001) Surfaces." The calculations were conducted using the SIESTA program (https://siesta-project.org/siesta).The data include the geometric structures of systems representing GaN(0001) surfaces (structure.xsf files) and selected properties calculated for these systems: density of states functions (GaN.PDOS files), dispersion relations (GaN.bands files), and UPS spectra estimates (GaN_ups.txt). The UPS spectra were estimated using the Galore code (https://github.com/SMTG-Bham/galore) and based on the DOS function (GaN_dos.txt), which was determined for the two Ga-N layers closest to the surfaces and the As adatoms.
DOI: 10.6084/m9.figshare.c.3823207_d1
title: Additional file 1: of Early warning signal for dengue outbreaks and identification of high risk areas for dengue fever in Colombia using climate and non-climate datasets

description: Supplementary 1.Cross-correlograms of climate datasets and DIP. Supplementary 2. Model specifications. Supplementary 3. Climate factors and DIP over time by department. Supplementary 4. The CRF index and DIP over time by department. Supplementary 5. Identification of high risk areas for dengue fever. Supplementary 6. EWS for 11 departments during the study period. Supplementary 7. EWS for 11 departments in 2015. (ZIP 2317 kb)
DOI: 10.6084/m9.figshare.c.3823279_d2
title: Additional file 2: of Development of an in silico method for the identification of subcomplexes involved in the biogenesis of multiprotein complexes in Saccharomyces cerevisiae

description: List of the proteins interacting with the subcomplexes of the studied complexes. The file includes three sheets, one for each complex: ELP, mediator head and bc1. (XLS 32 kb)
DOI: 10.6084/m9.figshare.c.3823267_d5.v1
title: Additional file 5: of Genome-resolved metaproteomic characterization of preterm infant gut microbiota development reveals species-specific metabolic shifts and variabilities during early life

description: Conserved EggNOGs and human protein groups determined in studied gut metaproteomes. (XLSX 17 kb)
DOI: 10.17863/cam.95552
title: Research data supporting 'The degredation mechanism of Ti-Nb-Zr-Sn alloys during cyclic testing'

description: Data associated with the aforementioned publication, including SEM images and mechanical testing data. There were 5 alloys under investigation. The mechanical testing involved 100 cycles of loading and unloading to a fixed stress for each alloy. This was performed on an Instron 3367. The SEM images were taken using BSE on a Zeiss GeminiSEM 300, with the parameters used for each image displayed on the image.
DOI: 10.6084/m9.figshare.c.3823267_d5
title: Additional file 5: of Genome-resolved metaproteomic characterization of preterm infant gut microbiota development reveals species-specific metabolic shifts and variabilities during early life

description: Conserved EggNOGs and human protein groups determined in studied gut metaproteomes. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3823267_d6.v1
title: Additional file 6: of Genome-resolved metaproteomic characterization of preterm infant gut microbiota development reveals species-specific metabolic shifts and variabilities during early life

description: Potential antibiotic resistance proteins in E. faecalis analyzed by CARD. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3823267_d6
title: Additional file 6: of Genome-resolved metaproteomic characterization of preterm infant gut microbiota development reveals species-specific metabolic shifts and variabilities during early life

description: Potential antibiotic resistance proteins in E. faecalis analyzed by CARD. (XLSX 26 kb)
DOI: 10.15468/dl.kygbqd
title: Occurrence Download

description: A dataset containing 597 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypocaccus dimidiatus (Illiger, 1807)"
 ]
}

 The dataset includes 597 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039253-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.txvchx
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caulolatilus cyanops Poey, 1866",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 21 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039254-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3823339_d3
title: Additional file 3: of Quantifying phenotype-environment matching in the protected Kerry spotted slug (Mollusca: Gastropoda) using digital photography: exposure to UV radiation determines cryptic colour morphs

description: Feeding trials. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3823339_d5.v1
title: Additional file 5: of Quantifying phenotype-environment matching in the protected Kerry spotted slug (Mollusca: Gastropoda) using digital photography: exposure to UV radiation determines cryptic colour morphs

description: Slug and Substrate RGB reflectance values. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3823339_d4
title: Additional file 4: of Quantifying phenotype-environment matching in the protected Kerry spotted slug (Mollusca: Gastropoda) using digital photography: exposure to UV radiation determines cryptic colour morphs

description: Lighting trials. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3823339_d5
title: Additional file 5: of Quantifying phenotype-environment matching in the protected Kerry spotted slug (Mollusca: Gastropoda) using digital photography: exposure to UV radiation determines cryptic colour morphs

description: Slug and Substrate RGB reflectance values. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3823330_d7.v1
title: Additional file 7: Table S4. of Proteomics-based identification of differentially abundant proteins reveals adaptation mechanisms of Xanthomonas citri subsp. citri during Citrus sinensis infection

description: Number of matching peptides and score/confidence level. (XLSX 223 kb)
DOI: 10.6084/m9.figshare.c.3824314_d1.v1
title: Additional file 1: of Integrative analysis of copy number and gene expression in breast cancer using formalin-fixed paraffin-embedded core biopsy tissue: a feasibility study

description: Clinical Data - The Sample ID and the Nature of samples (C-cancer or N-Normal), Tumor grade (1, 2, or 3, N/A) and oestrogen Receptor Status (1-positive, 2-negative or N/A- not available). (TXT 1 kb)
DOI: 10.6084/m9.figshare.c.3824302_d2.v1
title: Additional file 2 of Integrated genomic analysis of biological gene sets with applications in lung cancer prognosis

description: iNote installable R package. (TAR 319 kb)
DOI: 10.6084/m9.figshare.c.3824314_d1
title: Additional file 1: of Integrative analysis of copy number and gene expression in breast cancer using formalin-fixed paraffin-embedded core biopsy tissue: a feasibility study

description: Clinical Data - The Sample ID and the Nature of samples (C-cancer or N-Normal), Tumor grade (1, 2, or 3, N/A) and oestrogen Receptor Status (1-positive, 2-negative or N/A- not available). (TXT 1 kb)
DOI: 10.6084/m9.figshare.c.3824302_d2
title: Additional file 2 of Integrated genomic analysis of biological gene sets with applications in lung cancer prognosis

description: iNote installable R package. (TAR 319 kb)
DOI: 10.6084/m9.figshare.c.3824314_d3.v1
title: Additional file 3: of Integrative analysis of copy number and gene expression in breast cancer using formalin-fixed paraffin-embedded core biopsy tissue: a feasibility study

description: Molecular Inversion Probe Copy Number data. The data including probe signal, probe position, call rate, copy number relative standard deviation, Copy Number and Allelic ratio. (TXT 84778 kb)
DOI: 10.6084/m9.figshare.c.3824314_d3
title: Additional file 3: of Integrative analysis of copy number and gene expression in breast cancer using formalin-fixed paraffin-embedded core biopsy tissue: a feasibility study

description: Molecular Inversion Probe Copy Number data. The data including probe signal, probe position, call rate, copy number relative standard deviation, Copy Number and Allelic ratio. (TXT 84778 kb)
DOI: 10.6084/m9.figshare.c.3824350_d7.v1
title: Additional file 7 Table S4. of Comparative genomic analysis of Acinetobacter strains isolated from murine colonic crypts

description: Comparison of the genomes of A. modestus CM11G and A. radioresistens CM38.2 based on their functional categories according to RAST classification into subsystems. 1: presence of the feature; 0: absence of the feature. (XLSX 97 kb)
DOI: 10.6084/m9.figshare.c.3824356_d9.v1
title: Additional file 8: Table S6. of Identification of QTLs controlling grain protein concentration using a high-density SNP and SSR linkage map in barley (Hordeum vulgare L.)

description: Phenotypic data of two homozygous groups in each NIL population. (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.c.3824350_d7
title: Additional file 7 Table S4. of Comparative genomic analysis of Acinetobacter strains isolated from murine colonic crypts

description: Comparison of the genomes of A. modestus CM11G and A. radioresistens CM38.2 based on their functional categories according to RAST classification into subsystems. 1: presence of the feature; 0: absence of the feature. (XLSX 97 kb)
DOI: 10.6084/m9.figshare.c.3824356_d9
title: Additional file 8: Table S6. of Identification of QTLs controlling grain protein concentration using a high-density SNP and SSR linkage map in barley (Hordeum vulgare L.)

description: Phenotypic data of two homozygous groups in each NIL population. (XLSX 36Â kb)
DOI: 10.6073/pasta/2c64e2afd4faa2c0b57582d675d9cb51
title: Understory Vegetation in Hemlock Removal Experiment at Harvard Forest since 2003

description: Hemlock decline in New England is caused by direct and indirect effects of invasion of the hemlock woolly adelgid. Direct damage from the insect is causing gradual mortality of hemlock, and widespread harvesting of hemlock in advance of mortality, in contrast, causes immediate mortality and removal of biomass from the site. Although both processes affect thousands of acres of forest annually we have only a limited understanding of their effects on forest ecosystem function and productivity and the nature of the subsequent forest community. We anticipate that harvesting will yield different consequences than gradual mortality from the insect. Therefore we designed an experiment to simulate these contrasting impacts, by logging or girdling hemlock stands. Results from the experimental treatments are compared to the changes observed in forests that are being infested by the adelgid, and can also be included in integrated analyses of a suite of large experiments that form a core component of the Harvard Forest LTER program.
DOI: 10.5281/zenodo.14411880
title: AMOC simulations

description: AMOC simulations for Amaury
DOI: 10.5281/zenodo.14411879
title: AMOC simulations

description: AMOC simulations for Amaury
DOI: 10.5281/zenodo.14514230
title: AMOC simulations

description: AMOC simulations for Amaury
DOI: 10.15468/dl.bmsfp9
title: Occurrence Download

description: A dataset containing 156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caulolatilus intermedius Howell Rivero, 1936",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 156 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039255-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14506524
title: Global Kilometer-Resolution Dataset of Boundary Conditions for Climate Simulations of the Last Glacial Maximum

description: We have created a global dataset of Earth surface boundary conditions for the Last Glacial Maximum (LGM), 21,000 years before present on a regular longitude/latidute grid of 30 s resolution (≈ 0.9 km at the equator). It comprises the data for



 ice cover (ice)

topography (topo)

wind erodibility (erod)

top soiltype (soiltype_top)

bottom soiltype (soiltype_bot)

landcover / vegetation (landuse)


The techniques and input data used to generate the high resolution data sets are described in the respective sections of the Dataset_Description.pdf.The motivation for creating the data set is to use it in WPS, the preprocessor of the Weather Research and Forecasting Model (WRF). The data are cast into a binary format compatible with the geogrid utility of WPS.A version in the exchange format netCDF is also provided. This is more convenient for inspection and for use by other software.

While the pixel resolution of all data sets that are provided here is formally 30 s, the effective spatial resolution is in general lower. In most cases, interpolation and/or extrapolation of coarse data are involved at some point in the downscaling process.

All data sets are available in the following formats:



Network Common Data Form (netCDF-4). The filenames are <variable_name>_30s.nc, (e. g. topo_30s.nc). They are are available as compressed .gz files.

Binary format for geogrid of the WRF Preprocessing System (WPS). They are available a zipped tarball <variable_name>_30s.tar.gz (e.g. topo_30s.tar.gz). The unpacked folder has the name of the variable, in most cases followed by the suffix _30s (e.g. erod/ or topo_30s/). It contains one meta file called index and a large set of numbered data files in the form XXXXX-XXXXX.XXXXX-XXXXX, where X are digits.This folder can be readily added to the geogrid data directory (where it may replace an already existing default folder of the same name). If the entry geog_data_path in the namelist.wps file points to the parent directory of this folder, the WPS will use the new data when compiling the WRF boundary conditions with no other changes necessary.

Quicklook images of selected areas of the world are provided in png and eps formats. File names have the shape <area>.<period>.<format> (e.g. patagonia_lgm.eps). For each variable a compressed tarball containing these files is provided under the name <variable_name>_<format>.tar.gz