cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21438138.v1
title: #DefendPressFreedom: Paradigm Repair, Role Perceptions and Filipino Journalists’ Counterstrategies to Anti-Media Populism and Delegitimizing Threats

description: Journalists increasingly have to cope with severe attacks – ranging from Fake News accusations to violence and death threats. To better understand how journalists can counter delegitimizing attacks such as anti-media populism and online harassment, this study examines their paradigm repair strategies to ward off assaults in the unconsolidated democracy of the Philippines. Through in-depth semi-structured interviews with 18 Filipino reporters and editors from three influential media outlets that then President Rodrigo Duterte targeted as enemies – the broadcaster <i>ABS-CBN,</i> the newspaper <i>Philippine Daily Inquirer</i>, and the website <i>Rappler</i> – this paper offers novel insights on journalists’ counterstrategies with appeals to their strengthened roles as watchdogs, interpreters and disseminators of populist communication. Findings indicate that journalists discard practices like false equivalence and shift roles including from being detached observers to media freedom advocates and truth activists to respond to institutional attacks, rising disinformation, and perceived democratic erosion as they seek to speak truth to a populist in power. The study provides theoretical and empirical contributions by combining paradigm repair and role perceptions as tools in analyzing journalists’ responses to legitimacy threats, and by presenting an understudied case of anti-media populism in the Global South.
DOI: 10.6084/m9.figshare.24428302.v1
title: AD dataset

description: A processed dataset of Alzheimer's disease.
DOI: 10.6084/m9.figshare.5393932.v2
title: The interplay between selective and nonselective inhibition during single word production

description: Includes the following four folders: (1) raw data obtained from the PWI-SST, (2) R (and SPSS files) used for the statistical analyses, (3) script for the PWI-SST experiment in Presentation software, and (4) stimuli used in the PWI-SST.
DOI: 10.6084/m9.figshare.105151.v1
title: Citation impact of linking to data

description: Graph from 2012 preprint covering only years 2000 - 2010 (use newer version 2000-2015): The Citation Advantage of papers that links to data as a function of the year of publication as registered in ADS (defined as the ratio of the average number of citations per year to papers with links to data, and the average number of citations per year to papers without such links).
DOI: 10.6084/m9.figshare.16847320.v1
title: XRD patterns Frontiers Manuscript 785571

description: XRD patterns of the calcinated catalysts and the reduced catalyts
DOI: 10.6084/m9.figshare.3980109.v1
title: PowerPoint Slides for: Use of Extended-Release Calcifediol to Treat Secondary Hyperparathyroidism in Stages 3 and 4 Chronic Kidney Disease

description: <i>Background/Aims:</i> Vitamin D insufficiency and secondary hyperparathyroidism (SHPT) are associated with increased morbidity and mortality in chronic kidney disease (CKD) and are poorly addressed by current treatments. The present clinical studies evaluated extended-release (ER) calcifediol, a novel vitamin D prohormone repletion therapy designed to gradually correct low serum total 25-hydroxyvitamin D, improve SHPT control and minimize the induction of CYP24A1 and FGF23. <i>Methods:</i> Two identical multicenter, randomized, double-blind, placebo-controlled studies enrolled subjects from 89 US sites. A total of 429 subjects, balanced between studies, with stage 3 or 4 CKD, SHPT and vitamin D insufficiency were randomized 2:1 to receive oral ER calcifediol (30 or 60 µg) or placebo once daily at bedtime for 26 weeks. Most subjects (354 or 83%) completed dosing, and 298 (69%) entered a subsequent open-label extension study wherein ER calcifediol was administered without interruption for another 26 weeks. <i>Results:</i> ER calcifediol normalized serum total 25-hydroxyvitamin D concentrations (&gt;30 ng/ml) in &gt;95% of per-protocol subjects and reduced plasma intact parathyroid hormone (iPTH) by at least 10% in 72%. The proportion of subjects receiving ER calcifediol who achieved iPTH reductions of ≥30% increased progressively with treatment duration, reaching 22, 40 and 50% at 12, 26 and 52 weeks, respectively. iPTH lowering with ER calcifediol was independent of CKD stage and significantly greater than with placebo. ER calcifediol had inconsequential impact on serum calcium, phosphorus, FGF23 and adverse events. <i>Conclusion:</i> Oral ER calcifediol is safe and effective in treating SHPT and vitamin D insufficiency in CKD.
DOI: 10.6084/m9.figshare.12021075.v1
title: Data: CD mini-rhizotrons

description: This dataset contains the shoot height and root length for plants grown in the following conditions:<br>1. Lab (growth chamber): Plants were grown in CD mini-rhizotrons, Cone-tainer pots, and seed germination pouches<br>2. Field (common garden at the Pymantuning Laboratory of Ecology): Plants were grown in CD mini-rhizotrons and Cone-tainer pots
DOI: 10.6084/m9.figshare.13703752.v1
title: COVID19_July.rda

description: Seurat v3 objectTwo Objects:Colon_H_T (7148 cells)Illeum_H_T (6458 cells)<br>Each contains two assays - RNA (10X genomics data) - Targeted (Targeted scRNAseq)<br>In the metadata you will find the following variables -CellTypes: Annotated cell types -Cond: Time point of the sample -orig.ident: Sample name -seurat_clusters: Unsupervised clustering -Corrected_COVID19: Corrected Targeted expression of SARS-CoV2 -Normalized_Corrected_COVID19: Corrected Targeted expression of SARS-CoV2 normalized by the size of the RNA libraries -State: If a cell is bystander, infected or non-infected, based on the Corrected Targeted expression of SARS-CoV2 -Other QC variables
DOI: 10.17632/mb4kz7w9pn
title: Pre-pregnancy use of GLP-1RA improves maternal lipid metabolism disorder through liver-secreted FGF21 during pregnancy in high-fat diet fed dams

description: supplemental material of Pre-pregnancy use of GLP-1RA improves maternal lipid metabolism disorder through liver-secreted FGF21 during pregnancy in high-fat diet fed dams
DOI: 10.17632/mvsyhfhdb2
title: An updated version of wannier90: A tool for obtaining maximally-localised Wannier functions

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract wannier90  is a program for calculating maximally-localised Wannier functions (MLWFs) from a set of Bloch energy bands that may or may not be attached to or mixed with other bands. The formalism works by minimising the total spread of the MLWFs in real space. This is done in the space of unitary matrices that describe rotations of the Bloch bands at each k-point. As a result, wannier90  is independent of the basis set used in the underlying calculation to obtain the Bloch states. Therefore, i... Title of program: wannier90 Catalogue Id: AEAK_v2_0 Nature of problem Obtaining maximally-localised Wannier functions [2] from a set of Bloch energy bands that may or may not be entangled, and using these Wannier functions to calculate electronic properties of materials. Versions of this program held in the CPC repository in Mendeley Data AEAK_v1_0; wannier90; 10.1016/j.cpc.2007.11.016 AEAK_v2_0; wannier90; 10.1016/j.cpc.2014.05.003
DOI: 10.6084/m9.figshare.154175.v1
title: Data from CGG Trinucleotide repeat length modulates neural plasticity and spatiotemporal processing in a mouse model of the fragile X premutation

description: Raw data from Hunsaker, M. R., Kim, K. M., Willemsen, R., & Berman, R. F. (2012). CGG Trinucleotide repeat length modulates neural plasticity and spatiotemporal processing in a mouse model of the fragile X premutation. Hippocampus, 22(12), 2260-2275.
DOI: 10.6084/m9.figshare.12915422.v4
title: MisinformationCovid19OriginSocialdist.SurveyMonkey.Data.xlsx

description: Dataset from the study:<b> "Misinformation on COVID-19 origin and its relationship with perception and knowledge about social distancing: A cross-sectional study".</b><br><br><b> ABSTRACT</b><b><br></b>Despite the vast scientific evidence obtained from the genomic sequencing of COVID-19, a controversy regarding its origin has been created in the mass media. This could potentially have a long-term influence on the behavior among individuals, such as failure to comply with proposed social distancing measures, leading to a consequent rise in the morbidity and mortality rates from COVID-19 infection. Several studies have collected information about knowledge, attitudes and practices regarding COVID-19; however, very little is known about the relationship of the perceptions of the individuals regarding the origin of the virus with the knowledge and perception about social distancing. This study aimed at ascertaining this relationship. For such purpose, a web-based cross-sectional study was conducted among a sample population from five provinces of the Dominican Republic within the period of June to July of 2020. The data collection instrument exploited in the study was a self-designed questionnaire distributed throughout different social media platforms. A purposive sampling strategy was implemented and a total of 1195 respondents completed the questionnaire. The collected data was analyzed using SPSS. Descriptive statistics, stepwise multiple linear regression and one-way multivariate analysis were implemented to test the hypotheses. The level of education was significantly associated (<i>P</i> = .0.017) with individuals’ perception about the origin of COVID-19, whilst only age (<i>P</i> = .032) and education level (<i>P</i> &lt; .001) statistically significantly predicted ‘knowledge about social distancing’. Perception of COVID-19 origin was statistically significant associated (<i>P</i> = The present study has established a possible link between the ‘perception of COVID-19 origin’ and ‘the perception and knowledge about social distancing’. <br>
DOI: 10.6084/m9.figshare.3561282.v1
title: Supplement 1. Raw data and source R code for all calculations, figures, and tables.

description: File List nichefishdata.csv (MD5: b621543c218974dce68c8c2dd17c21f3) SourceCode_nicheROVER.R (MD5: e911a75dbaa59412366ba9406c4baf97) Description The supplements allow the reader to implement the methods using commented source code in R (SourceCode_nicheROVER.R). The raw data are also provided (nichefishdata.csv).
DOI: 10.6084/m9.figshare.4746886.v1
title: Lucy A.L. 288-1 reconstructed pelvis

description: The reconstructed pelvis of "Lucy" A.L. 288-1 Australopithecus afarensus
DOI: 10.6084/m9.figshare.5398573.v1
title: Model Onychomycosis Training Datasets (JPG thumbnails) and Validation Datasets (JPG images)

description: <b>1. Train dataset (Thumbnails)<br></b><i>A1 - Asan dataset</i> (49567 images) - Diagnosis based on image findings +/- clinical diagnosis identified by chart review<i>A2 - Asan dataset</i> (3741 images) - Clinical diagnosis identified by chart review<br><b>2. Validation dataset (1358 images)</b><i>B1 - Inje dataset</i> (100 images) - Culture<i>B2 - Inje dataset</i> (194 images) - KOH, or Culture, or Responsiveness to medications (TA ILI or antifungal drugs)<i>C - Hallym dataset</i> (125 images) - KOH, or Culture, or Responsiveness to medications (TA ILI or antifungal drugs)<i>D - Seoul dataset</i> (939 images) - KOH<br>
DOI: 10.6084/m9.figshare.16895302.v1
title: March 2021 Covid-19 + Vaccines Twitter Streaming Dataset

description: The file contains Tweet IDs* for COVID-19 related tweets collected in <b>March, 2021</b> from <b>Twitter's COVID-19 Streaming Endpoint </b>via a custom script developed by the <b>Social Media Lab (https://socialmedialab.ca/)</b>.<br>Visit <b>our interactive dashboard at https://stream.covid19misinfo.org</b>/ for a preview and some general stats about this COVID-19 Twitter streaming dataset.<br>For more info about <b>Twitter's COVID-19 Streaming Endpoint</b>, visit <b>https://developer.twitter.com/en/docs/labs/covid19-stream/overview</b><br><b>Note</b>: In accordance with Twitter API Terms, the dataset only includes Tweet IDs (as opposed to the actual tweets and associated metadata). To recollect tweets contained in this dataset, you can use programs such as Hydrator (https://github.com/DocNow/hydrator/) or the Python library Twarc (https://github.com/DocNow/twarc/).
DOI: 10.6084/m9.figshare.20459889.v1
title: Remotely sensed and surface measurement derived mass-conserving inversion of daily NO<sub>x</sub> emissions and inferred combustion technologies in energy rich Northern China

description: This work presents a new model free inversion estimation framework using daily TROPOMI NO<sub>2</sub> columns and observed fluxes from the continuous emissions monitoring system (CEMS) to quantify three years of daily-scale emissions of NO<sub>x</sub> at 0.05° × 0.05° over Shanxi Province, a major world-wide energy producing and consuming region. The NO<sub>x</sub> emissions, day-to-day variability, and uncertainty on a climatological basis are computed to be 1.86, 1.03, and 1.05 Tg per year respectively. The highest emissions are concentrated in the lower Fen River valley, which accounts for 25% of the area, 53% of the NO<sub>x</sub> emissions, and 72% of CEMS sources. Two major forcing factors (10th to 90th percentile) are horizontal transport distance per day (63-508 km) and lifetime of NO<sub>x</sub> (7.1-18.1 h). Both of these values are consistent with NO<sub>x</sub> emissions to both the surface layer and the free troposphere. The third forcing factor, the ratio of NO<sub>x</sub>/NO<sub>2</sub>, on a pixel-by-pixel basis is demonstrated to correlate with the combustion temperature and energy efficiency of large energy consuming sources. Specifically, thermal power plants, cement, and iron and steel companies have a relatively high NO<sub>x</sub>/NO<sub>2</sub> ratio, while coking, industrial boilers, and aluminium oxide factories show a relatively lower ratio. Variance maximization is applied to daily TROPOMI NO<sub>2</sub> columns, which facilitates identification of three orthogonal and statistically significant modes of variability, and successfully attributes them both spatially and temporally to (a) this work’s computed emissions, (b) remotely sensed TROPOMI UVAI, and (c) computed transport based on TROPOMI NO<sub>2</sub>.
DOI: 10.6084/m9.figshare.28925294.v1
title: Supplementary Material for: Real-World Genomic Landscape of Gastrointestinal Cancers in Asia and the Middle East Using Comprehensive Circulating Tumor DNA Next-Generation Sequencing

description: Introduction: Gastrointestinal malignancies account for 25% of all cancer cases and 35% of cancer-related mortality. Next-generation sequencing (NGS) can elucidate the genomic landscape of gastrointestinal cancers; tissue-based genotyping has traditionally been used, but liquid biopsy-based genotyping is a non-invasive alternative. Moreover, geographical variations in the genomic landscape of gastrointestinal cancers have not been fully elucidated. This retrospective study aimed to gain insight into the genomic landscape of patients with gastrointestinal cancers from the Asia and Middle East (AME) region using plasma-derived circulating tumor DNA (ctDNA).
Methods: From routine clinical practice, 2,601 plasma samples were collected from 2,062 patients with gastrointestinal cancers in the AME region. NGS profiling was conducted using the Guardant360® assay. The frequency of biomarkers that can aid decision-making in cancer patients was investigated.
Results: Single nucleotide variants (SNVs) affected most commonly TP53 (70.4%), KRAS (44.0%), APC (25.7%), ATM (15.1%), and PIK3CA (12.3%). Copy number alterations (CNAs) were most often observed in EGFR (13.7%), CCNE1 (5.9%), PIK3CA (5.0%), MYC (4.7%), and FGFR1 (4.6%); fusions were detected in 1.6% of patients and most frequently affected FGFR2, RET, ALK, FGFR3, and NTRK1/3. In patients with pancreatic adenocarcinoma, the most frequently observed clinically informative genomic biomarkers occurred in KRAS (G12C, 1.6%; all others, 67.1%), BRCA 1/2 (4.1%), BRAF (V600X, 1.5%), and microsatellite instability-high (MSI-H) (1.0%). In patients with colorectal cancer, the most common clinically relevant alterations were KRAS (49.0%), BRAF (V600E, 7.6%), and NRAS (5.7%) mutations; ERBB2 amplifications (2.5%); and MSI-H (1.8%). In patients with biliary tract cancers, actionable alterations included IDH1 mutations (11.1%), ERBB2 amplifications (4.6%), FGFR2 fusions (2.0%), MSI-H (2.0%), and BRAF V600E (1.5%). In patients with gastric or gastroesophageal junction adenocarcinomas, actionable alterations included ERBB2 amplifications (10.1%) and MSI-H (3.6%).
Conclusion. Our data provide insight into the genomic landscape of patients with gastrointestinal cancers from the AME region using ctDNA analysis. These findings highlight the potential utility of liquid biopsy as a non-invasive tool for characterizing tumor genomic profiles and support its role in clinical practice.
DOI: 10.6084/m9.figshare.28170518.v1
title: chignolin,1micro second

description: chignolin in water solution, parm99SB+TIP3P, gromacs-2023, 1micro second trajectory
DOI: 10.6084/m9.figshare.13041803.v2
title: The thousand-question Spanish general knowledge database

description: Dataset of the norms associated with the 1364 general knowledge questions responded by 385 Spanish university students.
DOI: 10.6084/m9.figshare.14247965.v1
title: Supplementary Material for: Community- and Hospital-Acquired Acute Kidney Injury in COVID-19: Different Phenotypes and Dismal Prognosis

description: <b><i>Introduction:</i></b> Acute kidney injury (AKI) is common in coronavirus disease 2019 (COVID-19). It is unknown if hospital-acquired AKI (HA-AKI) and community-acquired AKI (CA-AKI) convey a distinct prognosis. <b><i>Methods:</i></b> The study aim was to evaluate the incidence and risk factors associated with both CA-AKI and HA-AKI. Consecutive patients hospitalized at a reference center for COVID-19 were included in this prospective cohort study. <b><i>Results:</i></b> We registered 349 (30%) AKI episodes in 1,170 hospitalized patients, 224 (19%) corresponded to CA-AKI, and 125 (11%) to HA-AKI. Compared to patients with HA-AKI, subjects with CA-AKI were older (61 years [IQR 49–70] vs. 50 years [IQR 43–61]), had more comorbidities (hypertension [44 vs. 26%], CKD [10 vs. 3%]), higher Charlson Comorbidity Index (2 points [IQR 1–4] vs. 1 point [IQR 0–2]), and presented to the emergency department with more severe disease. Mortality rates were not different between CA-AKI and HA-AKI (119 [53%] vs. 63 [50%], <i>p</i> = 0.66). In multivariate analysis, CA-AKI was strongly associated to a history of CKD (OR 4.17, 95% CI 1.53–11.3), hypertension (OR 1.55, 95% CI 1.01–2.36), Charlson Comorbidity Index (OR 1.16, 95% CI 1.02–1.32), and SOFA score (OR 2.19, 95% CI 1.87–2.57). HA-AKI was associated with the requirement for mechanical ventilation (OR 68.2, 95% CI 37.1–126), elevated troponin I (OR 1.95, 95% CI 1.01–3.83), and glucose levels at admission (OR 1.05, 95% CI 1.02–1.08). <b><i>Discussion/Conclusions:</i></b> CA-AKI and HA-AKI portend an adverse prognosis in CO­VID-19. Nevertheless, CA-AKI was associated with a higher comorbidity burden (including CKD and hypertension), while HA-AKI occurred in younger patients by the time severe multiorgan disease developed.
DOI: 10.6084/m9.figshare.28936868.v1
title: Saikia et al. Taxonomic reassessment of bats from the Western Himalayas_Supplementary information (MS Excel files)

description: MS Excel spreadsheet containing GenBank numbers and the results of the data analyses published in the journal Zootaxa published by Saikia et al. (2025)
DOI: 10.6084/m9.figshare.26809468.v1
title: Data and Figures "...emitters from High Altitude"

description: Data used for ".... geolocation of emitters from high altitude"
DOI: 10.6084/m9.figshare.28537598.v1
title: Data_Hiroaki Ito_20250305

description: Data from the academic paper "High-Resolution Raman Spectroscopy Method for Serum and Urine Analysis with Autofluorescence Mitigation."
DOI: 10.6084/m9.figshare.14538072.v2
title: MIDAS velocities in California for Bayesian strain rate inference

description: MIDAS velocity data set used in the study "Bayesian Estimation of Surface Strain Rates from GNSS Measurements: application to the Southwestern US" by Pagani et al. submitted in 2021 to JGR. The velocities are calculated with respect to IGS14 as downloaded from the UNR website on February 2020 (http://geodesy.unr.edu/velocities/midas.IGS14.txt). For more details about the processing of these velocities and original data set, refer to <i>Blewitt, G., C. Kreemer, W.C. Hammond, and J. Gazeaux (2016). MIDAS robust trend estimator for accurate GPS station velocities without step detection, Journal of Geophysical Research, 121, doi:10.1002/2015JB012552</i>
DOI: 10.17632/58ph43s6h4
title: Instances for the Berth Allocation Problem in Tidal Bulk ports with Inventory control (BAPTBI)

description: Set of problem instances in the format: 
instancia.nnN.bbB.ppP.dddD

where nn= number of ships, bb = number of berths, pp = number of raw matters, ddd = density of raw matter per ship (25% = only one raw matter, 100% = 4 different raw matter per ship)

The instance file is formatted as (Commented example)

data;
set N := 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15;     *** SHIP SET
set K := Material1 Material2 Material3 Material4 Material5;  *** RAW MATTER SET
set L := 1 2 3 4; *** BERTH SET
param Mares := 115;  *** DISCRETE PLANNING HORIZON IN TERMS OF NUMBER OF TIDE AVAILABLE
param v :=  *** BERTH THROUGHPUT 
1 25
2 10
3 20
4 10;
param d :=  *** DEMURRAGE RATE
1 4000
2 3000
3 3000
4 1000
5 6000
6 3000
7 1000
8 6000
9 5000
10 2000
11 1000
12 4000
13 2000
14 2000
15 3000;
param a :=  *** ETA 
1 52
2 37
3 10
4 24
5 42
6 36
7 14
8 35
9 42
10 22
11 28
12 27
13 49
14 55
15 29;
param e :=  *** INITTIAL AMOUNT IN THE INVENTORY
Material1 80.00
Material2 60.00
Material3 70.00
Material4 60.00
Material5 60.00;
param ck :=  *** PRODUCTION OR CONSUMPTION  DEPENDING ON EXPORT OR IMPORT PORT
Material1 3.00
Material2 4.00
Material3 2.00
Material4 1.00
Material5 1.00;
param spin :=
Material1 -1
Material2 -1
Material3 -1
Material4 -1
Material5 -1;
param q : Material1 Material2 Material3 Material4 Material5 :=  *** RAM MATTER PER SHIP
1 80.00 56.00 72.00 60.00 59.00
2 83.00 64.00 68.00 61.00 60.00
3 80.00 60.00 70.00 59.00 60.00
4 83.00 64.00 72.00 61.00 61.00
5 77.00 56.00 70.00 61.00 60.00
6 83.00 56.00 72.00 59.00 59.00
7 77.00 64.00 68.00 61.00 61.00
8 80.00 56.00 68.00 61.00 59.00
9 77.00 64.00 72.00 61.00 60.00
10 77.00 64.00 72.00 60.00 61.00
11 80.00 60.00 68.00 61.00 61.00
12 83.00 60.00 70.00 60.00 59.00
13 83.00 64.00 68.00 60.00 60.00
14 83.00 64.00 72.00 61.00 60.00
15 83.00 56.00 70.00 60.00 60.00;
end;
DOI: 10.6084/m9.figshare.13272974.v1
title: Re-aligned data from UCSC 100-way vertebrate and 124-way insect exome alignments.

description: This data was used to infer compensatory frameshifting mutations for "Pairs of compensatory frameshifting mutations contribute to evolution of protein-coding sequences in vertebrates and insects" article. The details on how it was obtained can be found there. In short, the exonic regions were extracted from the genomes of species from the MULTIZ alignment according to MULTIZ annotation. These exons were concatenated and aligned using MAFFT. Resulting alignment were clipped from the ends and long regions from the middle looking like random intronic misannotations in one of the species were excluded.<br>
DOI: 10.6084/m9.figshare.23995848.v1
title: Zircon age data in "Provenance analysis of Yellow River terraces highlights causes of siltation and natural hazards in the North China Plain".xlsx

description: Zircon age data in "Provenance analysis of Yellow River terraces highlights causes of siltation and natural hazards in the North China Plain".Sup 1 shows detrital zircon age data tested in this study.Sup 2 shows published zircon age data and reference.