cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2f351s
title: CCDC 2237364: Experimental Crystal Structure Determination

description: Related Article: James Kaduk|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f352t
title: CCDC 2237365: Experimental Crystal Structure Determination

description: Related Article: James Kaduk|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f3973
title: CCDC 2237494: Experimental Crystal Structure Determination

description: Related Article: Yaoyu Liang, Jie Luo, Yael Diskin-Posner, David Milstein|2023|J.Am.Chem.Soc.|145|9164|doi:10.1021/jacs.3c01091
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f3984
title: CCDC 2237495: Experimental Crystal Structure Determination

description: Related Article: Yaoyu Liang, Jie Luo, Yael Diskin-Posner, David Milstein|2023|J.Am.Chem.Soc.|145|9164|doi:10.1021/jacs.3c01091
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f3995
title: CCDC 2237496: Experimental Crystal Structure Determination

description: Related Article: Yaoyu Liang, Jie Luo, Yael Diskin-Posner, David Milstein|2023|J.Am.Chem.Soc.|145|9164|doi:10.1021/jacs.3c01091
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f39b6
title: CCDC 2237497: Experimental Crystal Structure Determination

description: Related Article: Yaoyu Liang, Jie Luo, Yael Diskin-Posner, David Milstein|2023|J.Am.Chem.Soc.|145|9164|doi:10.1021/jacs.3c01091
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f6q4j
title: CCDC 2240777: Experimental Crystal Structure Determination

description: Related Article: Pandi Muthukumar, Gunasekaran Arunkumar, Mehboobali Pannipara, Abdullah G. Al-Sehemi, Dohyun Moon, Savarimuthu Philip Anthony|2023|RSC Advances|13|12065|doi:10.1039/D3RA01186K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25921/ajw1-6g75
title: EK80 Water Column Sonar Data Collected During PC1805
DOI: 10.5281/zenodo.7892948
title: Matlab Positive Unlabeled Learning Tools Datasets

description: Datasets to accompany the "Positive Unlabeled Learning Tools" Matlab repository implementing AlphaMax and DistCurve [![View Positive-Unlabeled Learning Tools on File Exchange](https://www.mathworks.com/matlabcentral/images/matlab-file-exchange.svg)](https://www.mathworks.com/matlabcentral/fileexchange/125175-positive-unlabeled-learning-tools) Original datasets from UCI Machine Learning Repository - https://archive.ics.uci.edu
DOI: 10.5281/zenodo.7892949
title: Matlab Positive Unlabeled Learning Tools Datasets

description: Datasets to accompany the "Positive Unlabeled Learning Tools" Matlab repository implementing AlphaMax and DistCurve [![View Positive-Unlabeled Learning Tools on File Exchange](https://www.mathworks.com/matlabcentral/images/matlab-file-exchange.svg)](https://www.mathworks.com/matlabcentral/fileexchange/125175-positive-unlabeled-learning-tools)
DOI: 10.5281/zenodo.7892963
title: Matlab Positive Unlabeled Learning Tools Datasets

description: Datasets to accompany the "Positive Unlabeled Learning Tools" Matlab repository implementing AlphaMax and DistCurve [![View Positive-Unlabeled Learning Tools on File Exchange](https://www.mathworks.com/matlabcentral/images/matlab-file-exchange.svg)](https://www.mathworks.com/matlabcentral/fileexchange/125175-positive-unlabeled-learning-tools) Original datasets from UCI Machine Learning Repository - https://archive.ics.uci.edu
DOI: 10.3886/335n-ws84
title: Burkina Faso Compact - Diversified Agriculture and Water Management: Interim and Final Data Set
DOI: 10.3886/f19r-6h21
title: Burkina Faso Compact - Diversified Agriculture and Water Management: Interim and Final Data Set
DOI: 10.6084/m9.figshare.22730534
title: Gene trees

description: <em>*Color coding used in gene trees: Physalacriaceae (green), other Basidiomycota (blue), Ascomycota (red), early diverging fungi (black)</em> <br> <em>*Horizontal transfer events are highlighted by yellow clades</em> <br> This folder contains additional supplementary files (gene trees showing clades with horizontal gene transfer events - Table S4) used in the manuscript: <strong>Genomic innovation and horizontal gene transfer shaped plant colonization and biomass degradation strategies of a globally prevalent fungal pathogen</strong> Neha Sahu, Boris Indic, Johanna Wong-Bajracharya, Zsolt Merényi, Huei-Mien Ke, Steven Ahrendt, Tori-Lee Monk, Sándor Kocsubé, Elodie Drula, Anna Lipzen, Balázs Bálint, Bernard Henrissat, Bill Andreopoulos, Francis M. Martin, Christoffer Bugge Harder, Daniel Rigling, Kathryn L. Ford, Gary D. Foster, Jasmyn Pangilinan, Alexie Papanicolaou, Kerrie Barry, Kurt LaButti, Máté Virágh, Maxim Koriabine, Mi Yan, Robert Riley, Simang Champramary, Krista L. Plett, Igor V. Grigoriev, Isheng Jason Tsai, Jason Slot, György Sipos, Jonathan Plett, László G. Nagy <em>bioRxiv 2022.11.10.515791; doi: https://doi.org/10.1101/2022.11.10.515791</em>
DOI: 10.6084/m9.figshare.22730534.v1
title: Gene trees

description: This folder contains additional supplementary files (gene trees showing clades with horizontal gene transfer events) used in the manuscript: <strong>Genomic innovation and horizontal gene transfer shaped plant colonization and biomass degradation strategies of a globally prevalent fungal pathogen</strong> Neha Sahu, Boris Indic, Johanna Wong-Bajracharya, Zsolt Merényi, Huei-Mien Ke, Steven Ahrendt, Tori-Lee Monk, Sándor Kocsubé, Elodie Drula, Anna Lipzen, Balázs Bálint, Bernard Henrissat, Bill Andreopoulos, Francis M. Martin, Christoffer Bugge Harder, Daniel Rigling, Kathryn L. Ford, Gary D. Foster, Jasmyn Pangilinan, Alexie Papanicolaou, Kerrie Barry, Kurt LaButti, Máté Virágh, Maxim Koriabine, Mi Yan, Robert Riley, Simang Champramary, Krista L. Plett, Igor V. Grigoriev, Isheng Jason Tsai, Jason Slot, György Sipos, Jonathan Plett, László G. Nagy <em>bioRxiv 2022.11.10.515791; doi: https://doi.org/10.1101/2022.11.10.515791</em>
DOI: 10.6084/m9.figshare.21571344.v3
title: Numerical simulation of the large-scale Huangtian (China) landslide-generated impulse waves by a GPU-accelerated three-dimensional soil‒water coupled SPH model

description: Simulated data in Huangtian LGIW and the validtaion example associated with the manuscript " Numerical simulation of Huangtian (China) landslide-generated impulse waves by an improved three-dimensional soil‒water coupled SPH model with GPU acceleration" by Huang et al.
DOI: 10.5281/zenodo.7613297
title: Research data for "Structure and Bonding in Amorphous Red Phosphorus"

description: This dataset supports the paper: "Structure and Bonding in Amorphous Red Phosphorus". The paper is online here: https://doi.org/10.1002/anie.202216658. The following .xyz and .cif files are provided in a compressed .zip file: "Optimised_phosphorus_models.zip": the atomic structures of various phosphorus modifications, including three representative models of amorphous phosphorus, as well as black phosphorus, white phosphorus, violet phosphorus, fibrous phosphorus, and three phosphorus nanorods, which are all fully optimised using DFT with van der Waals corrections (i.e., PBE+D3).
DOI: 10.5281/zenodo.7613296
title: Research data for "Structure and Bonding in Amorphous Red Phosphorus"

description: This dataset supports the paper: "Structure and Bonding in Amorphous Red Phosphorus". The paper is online here: https://doi.org/10.1002/anie.202216658. The following .xyz and .cif files are provided in a compressed .zip file: "Optimised_phosphorus_models.zip": the atomic structures of various phosphorus modifications, including three representative models of amorphous phosphorus, as well as black phosphorus, white phosphorus, violet phosphorus, fibrous phosphorus, and three phosphorus nanorods, which are all fully optimised using DFT with van der Waals corrections (i.e., PBE+D3).
DOI: 10.35078/3hutf9
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Diamantina| Município: Sarzedo

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.25345/c54x54s5b
title: MassIVE MSV000091844 - RAD51 phosphorylation status is controlled by the protein phosphatase EYA4, and it modulates presynaptic filament formation and activity in DNA repair
title: Efficient DNA repair and limitation of genome rearrangements rely on cross-talk between different double-strand break (DSB) repair pathways, as well as their synchronization with the cell cycle. The selection, timing, and efficacy of DSB repair pathways are influenced by post-translational modifications of histones and DNA damage repair (DDR) proteins, such as phosphorylation. While the importance of kinases and serine threonine phosphatases in DDR has been extensively studied, the role of tyrosine phosphatases in DNA repair remains poorly understood. In this study, we have identified EYA4 as the protein phosphatase for RAD51 residue Y315. Through its tyrosine phosphatase activity, EYA4 regulates RAD51 presynaptic filament formation, foci formation, activity and is thus essential for homologous recombination (HR) at DSBs. Similar to the kinase DNA PK, EYA4 activity is stimulated by DNA binding. Depletion of EYA4 decreases end resection and HR, while overexpression of EYA4 in cells promotes the dephosphorylation and stabilization of RAD51, and influences nucleoprotein filament formation. Our data have implications for a pathological version of RAD51 in EYA-overexpressing cancers. To learn more about the EYA4 protein network in response to DNA damage, we used immunoprecipitation in HeLa cells. The cells were transfected with a GFP-fused full length EYA4 cDNA and exposed to either no irradiation or 10 Gy irradiation, using an anti-GFP nanobody or an isotype control. Eluted proteins were separated by 1-D SDS PAGE (appx. 1 cm), and the protein-containing region of each gel lane was divided into six slices prior to in-gel digestion and HPLC-ESI-tandem-MS analysis on a Thermo Fisher Orbitrap Velos Pro mass spectrometer. The following software was utilized for data processing: Mascot and Mascot Distiller (Matrix Science); Scaffold 5 and Scaffold Quant (Proteome Software).
DOI: 10.5519/qd.p2ntic43
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1472 records)
DOI: 10.5281/zenodo.7893108
title: Traditional knowledge of wild plant species used in the southern part of Wadi Araba desert in South-West Jordan

description: This data set provides documentation of traditional knowledge of using native plants in the Wadi Araba desert. The uses for grazing, firewood, food, and medicine. The information was obtained using a survey.
DOI: 10.5281/zenodo.7893107
title: Traditional knowledge of wild plant species used in the southern part of Wadi Araba desert in South-West Jordan

description: This data set provides documentation of traditional knowledge of using native plants in the Wadi Araba desert. The uses for grazing, firewood, food, and medicine. The information was obtained using a survey.
DOI: 10.25345/c5154f00f
title: MassIVE MSV000091845 - Novel Dihydrofuran Derivatives-HeLa cells-Bottom Up Proteomics-Label Free Quantification
title: Novel Dihydrofuran derivatives-HeLa cells-Bottom up Proteomics-label free quantification
DOI: 10.35078/nukniw
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Diamantina | Município: Senador Modestino Gonçalves

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.6084/m9.figshare.22682370.v1
title: Drug-induced liver injury associated with the use of newer antiseizure medications in the elderly: an analysis of data from VigiBase

description: Data on drug-induced liver injury (DILI) caused by newer antiseizure medications (ASMs) in the elderly are scarce and mainly come from literature case reports. We analyzed Individual Case Safety Reports (ICSRs) of DILI in elderly patients treated with newer ASMs reported to VigiBase. Empirica™ Signal software was used to retrieve ICSRs reported to VigiBase up to 31 December 2021 and to calculate Empirical Bayesian Geometric Mean and corresponding 90% confidence intervals (EB05, EB95) for each drug-event pair. EB05 &gt; 2, <i>N</i> &gt; 0 was considered a signal. Analysis by age subgroups and gender was performed to assess the influence of these factors on ICSR characteristics and identified signals. There were 1399 ICSRs reporting 1947 events of hepatotoxicity. 56.97% of the reports were reported in females, 67.05% were serious, and 3.36% resulted in death. For one or more events of hepatotoxicity, signals were detected for lamotrigine, levetiracetam, oxcarbazepine, topiramate, and zonisamide. Age- and gender-biased reporting frequency was identified for topiramate-induced hyperammonemia, with disproportionally higher reporting frequency in ≥75-year-old male patients. The results of our study indicate differences among newer ASMs in their potential to cause DILI in the elderly. Further studies are needed to confirm the associations identified in this study.
DOI: 10.6084/m9.figshare.22682370
title: Drug-induced liver injury associated with the use of newer antiseizure medications in the elderly: an analysis of data from VigiBase

description: Data on drug-induced liver injury (DILI) caused by newer antiseizure medications (ASMs) in the elderly are scarce and mainly come from literature case reports. We analyzed Individual Case Safety Reports (ICSRs) of DILI in elderly patients treated with newer ASMs reported to VigiBase. Empirica™ Signal software was used to retrieve ICSRs reported to VigiBase up to 31 December 2021 and to calculate Empirical Bayesian Geometric Mean and corresponding 90% confidence intervals (EB05, EB95) for each drug-event pair. EB05 &gt; 2, <i>N</i> &gt; 0 was considered a signal. Analysis by age subgroups and gender was performed to assess the influence of these factors on ICSR characteristics and identified signals. There were 1399 ICSRs reporting 1947 events of hepatotoxicity. 56.97% of the reports were reported in females, 67.05% were serious, and 3.36% resulted in death. For one or more events of hepatotoxicity, signals were detected for lamotrigine, levetiracetam, oxcarbazepine, topiramate, and zonisamide. Age- and gender-biased reporting frequency was identified for topiramate-induced hyperammonemia, with disproportionally higher reporting frequency in ≥75-year-old male patients. The results of our study indicate differences among newer ASMs in their potential to cause DILI in the elderly. Further studies are needed to confirm the associations identified in this study.
DOI: 10.5281/zenodo.7892947
title: Material Suplementario Tesis Blanca Navarrete

description: Material suplementario de la tesis titulada:<br> Estudio del control genético de la patogénesis a través de la modificación de la cromatina en el hongo fitopatógeno <em>Ustilago maydis.</em> DataSet S1: Genes diferencialmente expresados en la estirpe silvestre en placas PD-charcoal comparado con medio axénico. DataSet S2: Genes diferencialmente expresados en la estirpe silvestre en planta a 3 dpi comparado con medio axénico. DataSet S3. Análisis diferencial de los picos del ChIP-seq obtenidos en el mutante Δ<em>ash1</em> comparado con la estirpe silvestre en cultivo axénico. DataSet S4. Análisis diferencial de los picos del ChIP-seq obtenidos en el mutante Δ<em>set</em>2 comparado con la estirpe silvestre en cultivo axénico. DataSet_S5: Genes englobados en los picos de H3K36me3 dependientes de Ash1. DataSet_S6: Genes englobados en los picos de H3K36me3 dependientes de Set2. DataSet_S7: Genes diferencialmente expresado en el mutante Δ<em>ash1</em> comparado con la estirpe silvestre en cultivos axénicos. DataSet_S8: Genes diferencialmente expresado en el mutante Δ<em>set2</em> comparado con la estirpe silvestre en cultivos axénicos.
DOI: 10.5281/zenodo.7892602
title: Material Suplementario Tesis Blanca Navarrete

description: Material suplementario de la tesis titulada:<br> Estudio del control genético de la patogénesis a través de la modificación de la cromatina en el hongo fitopatógeno <em>Ustilago maydis.</em> DataSet S1: Genes diferencialmente expresados en la estirpe silvestre en placas PD-charcoal comparado con medio axénico. DataSet S2: Genes diferencialmente expresados en la estirpe silvestre en planta a 3 dpi comparado con medio axénico. DataSet S3. Análisis diferencial de los picos del ChIP-seq obtenidos en el mutante Δ<em>ash1</em> comparado con la estirpe silvestre en cultivo axénico. DataSet S4. Análisis diferencial de los picos del ChIP-seq obtenidos en el mutante Δ<em>set</em>2 comparado con la estirpe silvestre en cultivo axénico. DataSet_S5: Genes englobados en los picos de H3K36me3 dependientes de Ash1. DataSet_S6: Genes englobados en los picos de H3K36me3 dependientes de Set2. DataSet_S7: Genes diferencialmente expresado en el mutante Δ<em>ash1</em> comparado con la estirpe silvestre en cultivos axénicos. DataSet_S8: Genes diferencialmente expresado en el mutante Δ<em>set2</em> comparado con la estirpe silvestre en cultivos axénicos.
DOI: 10.5281/zenodo.7890874
title: Cytological and histological images of breast cancer

description: Data set of cytological and histological images of breast cancer. <strong>Data set structure</strong>: Cytological image files (size 3264x2448 px, microscope with x40 lens used). The name of each folder contains the name of the diagnosis. Files of histological and corresponding immunohistochemical images of breast tissue sections (size 2048x1536 px). The name of each folder contains the name of the diagnosis. Each folder contains 1 H&E histological image and 4 folders with IHC images for 4 biomarkers: estrogen receptor (ER), progesterone receptor (PR), Ki-67 Biomarker (KI67), human epidermal growth factor receptor-2 (HER2NEU).
DOI: 10.5281/zenodo.7890873
title: Cytological and histological images of breast cancer

description: Data set of cytological and histological images of breast cancer. <strong>Data set structure</strong>: Cytological image files (size 3264x2448 px, microscope with x40 lens used). The name of each folder contains the name of the diagnosis. Files of histological and corresponding immunohistochemical images of breast tissue sections (size 2048x1536 px). The name of each folder contains the name of the diagnosis. Each folder contains 1 H&E histological image and 4 folders with IHC images for 4 biomarkers: estrogen receptor (ER), progesterone receptor (PR), Ki-67 Biomarker (KI67), human epidermal growth factor receptor-2 (HER2NEU).
DOI: 10.6084/m9.figshare.22748399
title: Direct Determination of High Order Transverse Ligand Field Parameters via µSQUID-EPR in a Et4N[160GdPc2] SMM

description: Experimental data for Figure 4a, 4c and 5
DOI: 10.6084/m9.figshare.22748399.v1
title: Direct Determination of High Order Transverse Ligand Field Parameters via µSQUID-EPR in a Et4N[160GdPc2] SMM

description: Experimental data for Figure 4a, 4c and 5
DOI: 10.5683/sp/d89usp
title: Research Data Management (RDM) Survey of Queen's University's Faculty of Health Sciences, 2017

description: In order to become better prepared to support Research Data Management (RDM) practices in health sciences, Queen’s University Library, together with the University Research Services, conducted a research study of all ranks of faculty members, as well as postdoctoral fellows, medical residents, and graduate students in the Faculty of Health Sciences.