cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6529751
title: Additional file 6: of Cell type-specific analysis of transcriptome changes in the porcine endometrium on Day 12 of pregnancy

description: Table S6. DEGs involved in estrogen signaling, prostaglandin metabolism and signaling, and other selected pathways. (XLSX 117Â kb)
DOI: 10.6084/m9.figshare.6529751.v1
title: Additional file 6: of Cell type-specific analysis of transcriptome changes in the porcine endometrium on Day 12 of pregnancy

description: Table S6. DEGs involved in estrogen signaling, prostaglandin metabolism and signaling, and other selected pathways. (XLSX 117Â kb)
DOI: 10.6084/m9.figshare.6529739
title: Additional file 5: of Cell type-specific analysis of transcriptome changes in the porcine endometrium on Day 12 of pregnancy

description: Table S5. Overrepresentation analysis for genes only differentially expressed in three cell types and complete tissue. (XLSX 687Â kb)
DOI: 10.6084/m9.figshare.6529739.v1
title: Additional file 5: of Cell type-specific analysis of transcriptome changes in the porcine endometrium on Day 12 of pregnancy

description: Table S5. Overrepresentation analysis for genes only differentially expressed in three cell types and complete tissue. (XLSX 687Â kb)
DOI: 10.6084/m9.figshare.6529715
title: Additional file 3: of Cell type-specific analysis of transcriptome changes in the porcine endometrium on Day 12 of pregnancy

description: Table S3. Selected function found in luminal epithelium, glandular epithelium, stroma, and complete tissue. (XLSX 58Â kb)
DOI: 10.6084/m9.figshare.6529715.v1
title: Additional file 3: of Cell type-specific analysis of transcriptome changes in the porcine endometrium on Day 12 of pregnancy

description: Table S3. Selected function found in luminal epithelium, glandular epithelium, stroma, and complete tissue. (XLSX 58Â kb)
DOI: 10.6084/m9.figshare.6529697
title: Additional file 2: of Cell type-specific analysis of transcriptome changes in the porcine endometrium on Day 12 of pregnancy

description: Table S2. Differentially expressed genes in luminal epithelium, glandular epithelium, stroma, and complete tissue. (XLSX 1826Â kb)
DOI: 10.6084/m9.figshare.6529697.v1
title: Additional file 2: of Cell type-specific analysis of transcriptome changes in the porcine endometrium on Day 12 of pregnancy

description: Table S2. Differentially expressed genes in luminal epithelium, glandular epithelium, stroma, and complete tissue. (XLSX 1826Â kb)
DOI: 10.6084/m9.figshare.6528305
title: VoxEL__no_

description: This dataset has manual annotations with respect to Wikipedia over the same text written in five languages: German (de), English (en), Spanish (es), French (fr) and Italian (it). The dataset is composed of 15 annotated news articles (in each of the 5 languages; 75 articles in total) where there is the same number of sentences in each language, as well as the same set of annotations for each corresponding sentence in the different languages. Each language has a total of 94 sentences across the 15 articles.<br>We propose two annotated versions of the dataset: a strict version that only annotates persons, organizations and places (per, for example, traditional NER/MUC definitions of an entity), and a relaxed version that includes a larger number of annotations (e.g., capturing entity mentions such as “inflation” that have a corresponding Wikipedia article). Both the relaxed and the strict versions have the same text in the same languages. The strict version has 204 annotations per language, while the relaxed version has 674 annotations per language.
DOI: 10.6084/m9.figshare.6527714
title: Melanoma gene expression data

description: microarray data for melanoma
DOI: 10.6084/m9.figshare.6527348
title: SRBCT data

description: SRBCT microarray data
DOI: 10.6084/m9.figshare.6527279
title: Melanoma clinical data

description: Clinical data for melanoma example
DOI: 10.6084/m9.figshare.6527279.v1
title: Melanoma clinical data

description: Clinical data for melanoma example
DOI: 10.6084/m9.figshare.6527219
title: Dataset for: Comparison of Two Correlated ROC Surfaces at a Given Pair of True Classification Rates

description: The receiver operating characteristics (ROC) curve is typically employed when one wants to evaluate the discriminatory capability of a continuous or ordinal biomarker in the case where two groups are to be distinguished, commonly the ’healthy’ and the ’diseased’. There are cases for which the disease status has three categories. Such cases employ the (ROC) surface, which is a natural generalization of the ROC curve for three classes. In this paper, we explore new methodologies for comparing two continuous biomarkers that refer to a trichotomous disease status, when both markers are applied to the same patients. Comparisons based on the volume under the surface have been proposed, but that measure is often not clinically relevant. Here, we focus on comparing two correlated ROC surfaces at given pairs of true classification rates, which are more relevant to patients and physicians. We propose delta-based parametric techniques, power transformations to normality, and bootstrap-based smooth nonparametric techniques to investigate the performance of an appropriate test. We evaluate our approaches through an extensive simulation study and apply them to a real data set from prostate cancer screening.
DOI: 10.6084/m9.figshare.6527219.v1
title: Dataset for: Comparison of Two Correlated ROC Surfaces at a Given Pair of True Classification Rates

description: The receiver operating characteristics (ROC) curve is typically employed when one wants to evaluate the discriminatory capability of a continuous or ordinal biomarker in the case where two groups are to be distinguished, commonly the ’healthy’ and the ’diseased’. There are cases for which the disease status has three categories. Such cases employ the (ROC) surface, which is a natural generalization of the ROC curve for three classes. In this paper, we explore new methodologies for comparing two continuous biomarkers that refer to a trichotomous disease status, when both markers are applied to the same patients. Comparisons based on the volume under the surface have been proposed, but that measure is often not clinically relevant. Here, we focus on comparing two correlated ROC surfaces at given pairs of true classification rates, which are more relevant to patients and physicians. We propose delta-based parametric techniques, power transformations to normality, and bootstrap-based smooth nonparametric techniques to investigate the performance of an appropriate test. We evaluate our approaches through an extensive simulation study and apply them to a real data set from prostate cancer screening.
DOI: 10.6084/m9.figshare.6527153
title: pam50 for tcga

description: pam50 for TCGA data
DOI: 10.6084/m9.figshare.6527153.v1
title: pam50 for tcga

description: pam50 for TCGA data
DOI: 10.6084/m9.figshare.6525794
title: TCGA data

description: TCGA cancer data processed by Kim Anh Le Cao
DOI: 10.6084/m9.figshare.6525794.v2
title: TCGA data

description: TCGA cancer data processed by Kim Anh Le Cao
DOI: 10.6084/m9.figshare.6525794.v1
title: TCGA data

description: TCGA cancer data processed by Kim Anh Le Cao
DOI: 10.6084/m9.figshare.6525248
title: WS_New VR platform for the personalization of care in psychiatry: the example of ReViSTIM project

description: This paper presents a new VR platform in hospital envi- ronment for the study of mental diseases. The Revistim platform consists in several hardware devices and software tools for the immersion of subjects, the collection of vari- ous subjective, physiological and behavioral data as well as the use of new psychotherapeutic systems. The platform is used both for research in neuro-psychiatry (diagnosis, rehabilitation and treatment) and user experience mod- eling. Considering care, the main objective is to propose personalized care in psychiatry through the assessment of the patient state, the priorisation of targeted interventions, and an efficient evaluation of the VR therapy on the different dimensions of the disease.
DOI: 10.6084/m9.figshare.6525248.v1
title: New VR platform for the personalization of care in psychiatry: the example of ReViSTIM project

description: This paper presents a new VR platform in hospital envi- ronment for the study of mental diseases. The Revistim platform consists in several hardware devices and software tools for the immersion of subjects, the collection of vari- ous subjective, physiological and behavioral data as well as the use of new psychotherapeutic systems. The platform is used both for research in neuro-psychiatry (diagnosis, rehabilitation and treatment) and user experience mod- eling. Considering care, the main objective is to propose personalized care in psychiatry through the assessment of the patient state, the priorisation of targeted interventions, and an efficient evaluation of the VR therapy on the different dimensions of the disease.
DOI: 10.6084/m9.figshare.6525164
title: Development of an electrooculogram-based human-computer interface using involuntary eye movement by spatially rotating sound for communication of locked-in patients

description: Individuals who have lost normal pathways for communication need augmentative and alternative communication (AAC) devices.In this study, we propose a new electrooculogram (EOG)-based human-computer interface (HCI) paradigm for AAC that does not require a user’s voluntary eye movement for binary yes/no communication by patients in locked-in state (LIS). The proposed HCI uses a horizontal EOG elicited by involuntary auditory oculogyric reflex, in response to a rotating sound source. In the proposed HCI paradigm, a user was asked to selectively attend to one of two sound sources rotating in directions opposite to each other, based on the user’s intention. The user’s intentions could then be recognised by quantifying EOGs. To validate its performance, a series of experiments was conducted with ten healthy subjects, and two patients with amyotrophic lateral sclerosis (ALS). The online experimental results exhibited high-classification accuracies of 94% in both healthy subjects and in the ALS patients in cases where decisions were made every six seconds. The ALS patients also participated in a practical yes/no communication experiment with 26 or 30 questions with known answers. The accuracy of the experiments with questionnaires was 94%, demonstrating that our paradigm could constitute an auxiliary AAC system for some LIS patients.
DOI: 10.6084/m9.figshare.6525164.v1
title: Development of an electrooculogram-based human-computer interface using involuntary eye movement by spatially rotating sound for communication of locked-in patients

description: Individuals who have lost normal pathways for communication need augmentative and alternative communication (AAC) devices.In this study, we propose a new electrooculogram (EOG)-based human-computer interface (HCI) paradigm for AAC that does not require a user’s voluntary eye movement for binary yes/no communication by patients in locked-in state (LIS). The proposed HCI uses a horizontal EOG elicited by involuntary auditory oculogyric reflex, in response to a rotating sound source. In the proposed HCI paradigm, a user was asked to selectively attend to one of two sound sources rotating in directions opposite to each other, based on the user’s intention. The user’s intentions could then be recognised by quantifying EOGs. To validate its performance, a series of experiments was conducted with ten healthy subjects, and two patients with amyotrophic lateral sclerosis (ALS). The online experimental results exhibited high-classification accuracies of 94% in both healthy subjects and in the ALS patients in cases where decisions were made every six seconds. The ALS patients also participated in a practical yes/no communication experiment with 26 or 30 questions with known answers. The accuracy of the experiments with questionnaires was 94%, demonstrating that our paradigm could constitute an auxiliary AAC system for some LIS patients.
DOI: 10.6084/m9.figshare.6523466
title: Theoretical ribosomal protein mass fingerprint of Bacillus megaterium

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of<i> Bacillus megaterium</i>.<br><br>
DOI: 10.6084/m9.figshare.6523223
title: Theoretical ribosomal protein mass fingerprint of Bacillus licheniformis

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Bacillus licheniformis</i>.<br><br>
DOI: 10.6084/m9.figshare.6522506
title: Recognition of mid-Paleozoic volcanism in New Zealand

description: Two felsic volcanic clasts from conglomerates in Fiordland and northwest Nelson provide U–Pb zircon ages of 359 and c. 362 Ma respectively; ages that occur within the interval between voluminous Western Province plutonic S-type magmatism of the Karamea and Ridge suites. Both volcanic clasts have inherited zircon populations, and trace element signatures suggesting derivation from crustal melts. The dacitic clast from the mid-Cretaceous Seek Cove Formation in southwest Fiordland has whole-rock chemistry and an O–Hf–zircon isotopic signature consistent with derivation from the Takaka Terrane. A rhyolite clast from the Pupu Conglomerate in northwest Nelson also has chemistry consistent with derivation from a Takaka Terrane source. We therefore correlate both volcanic clasts to the S-type Ridge Suite. No comparable S-type plutonic source of the same age has been recognised in the northwest Nelson section of the Takaka Terrane. These volcanic clasts represent the oldest recognised episode of S-type Ridge Suite magmatism in the Takaka Terrane.
DOI: 10.6084/m9.figshare.6523223.v1
title: Theoretical ribosomal protein mass fingerprint of Bacillus licheniformis

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Bacillus licheniformis</i>.<br><br>
DOI: 10.6084/m9.figshare.6522506.v1
title: Recognition of mid-Paleozoic volcanism in New Zealand

description: Two felsic volcanic clasts from conglomerates in Fiordland and northwest Nelson provide U–Pb zircon ages of 359 and c. 362 Ma respectively; ages that occur within the interval between voluminous Western Province plutonic S-type magmatism of the Karamea and Ridge suites. Both volcanic clasts have inherited zircon populations, and trace element signatures suggesting derivation from crustal melts. The dacitic clast from the mid-Cretaceous Seek Cove Formation in southwest Fiordland has whole-rock chemistry and an O–Hf–zircon isotopic signature consistent with derivation from the Takaka Terrane. A rhyolite clast from the Pupu Conglomerate in northwest Nelson also has chemistry consistent with derivation from a Takaka Terrane source. We therefore correlate both volcanic clasts to the S-type Ridge Suite. No comparable S-type plutonic source of the same age has been recognised in the northwest Nelson section of the Takaka Terrane. These volcanic clasts represent the oldest recognised episode of S-type Ridge Suite magmatism in the Takaka Terrane.
DOI: 10.6084/m9.figshare.6516827
title: Heat Patch Measurements

description: The difference between the minimum and maximum heat distribution of thermoelectric elements in nested in textiles.<br>
DOI: 10.6084/m9.figshare.6516827.v1
title: Heat Patch Measurements

description: The difference between the minimum and maximum heat distribution of thermoelectric elements in nested in textiles.<br>
DOI: 10.6084/m9.figshare.6516683
title: Remedios naturales - Medicina natural

description: Los remeidos caseros naturales son el mejor metodo para tratartodo tipo de dolencias, ya que al tener beneficios natutrales muy buenos ayudara a regenerar nuestra salud de forma natural y favorable , este articulo trata sobre esto , sobre <b>los mejores remedios naturales caseros.</b>
DOI: 10.6084/m9.figshare.6512957
title: Hv Jussy annotation (blast, pfam, panther)

description: Described in the materials and methods.Annotation by blast, Pfam 31, and Panther 13<br><br>
DOI: 10.6084/m9.figshare.6512957.v1
title: Hv Jussy annotation (blast, pfam, panther)

description: Described in the materials and methods.Annotation by blast, Pfam 31, and Panther 13<br><br>
DOI: 10.6084/m9.figshare.6512957.v3
title: Hv Jussy annotation (blast, pfam, panther)

description: Described in the materials and methods.Annotation by blast, Pfam 31, and Panther 13<br><br>
DOI: 10.6084/m9.figshare.6510302
title: Data accompanying " Effects of arousal on biased competition in attention and short-term memory", submitted to Attention, Perception and Psychophysics, in March, 2019

description: We include six data files from 4 separate experiments (1, 2, 3A and 3B, described in the manuscript. Four data files contain behavioral data from experimental tasks. Two data files contain the ratings of arousing stimuli made by participants in Experiments 3A and 3B. <br>
DOI: 10.6084/m9.figshare.6510302.v1
title: Data accompanying "Effects of arousal on biased competition in spatially divided attention", submitted to Attention, Perception and Psychophysics, in June, 2018.

description: We include three datasets from three separate experiments, described in the manuscript. There are three data files, which include all relevant information for each experiment, and a PDF with a variable key.
DOI: 10.6084/m9.figshare.6510302.v2
title: Data accompanying " Effects of arousal on biased competition in attention and short-term memory", submitted to Attention, Perception and Psychophysics, in March, 2019

description: We include six data files from 4 separate experiments (1, 2, 3A and 3B, described in the manuscript. Four data files contain behavioral data from experimental tasks. Two data files contain the ratings of arousing stimuli made by participants in Experiments 3A and 3B. <br>
DOI: 10.6084/m9.figshare.6510284
title: Supplemental Tables for MIS/AMH as a predictor of preterm birth in polycystic ovary syndrome

description: Supplemental Tables for stratified analysis by DOR diagnosis - association of MIS/AMH level and risk of Cesarean delivery for arrest of labor
DOI: 10.6084/m9.figshare.6510284.v1
title: Supplemental Tables for MIS/AMH as a predictor of preterm birth in polycystic ovary syndrome

description: Supplemental Tables for stratified analysis by DOR diagnosis - association of MIS/AMH level and risk of Cesarean delivery for arrest of labor
DOI: 10.6084/m9.figshare.6510260
title: Do doctors in dispensing practices with a financial conflict of interest prescribe more expensive drugs?

description: Data management and analysis from the above entitled paper
DOI: 10.6084/m9.figshare.6510260.v2
title: Do doctors in dispensing practices with a financial conflict of interest prescribe more expensive drugs?

description: Data management and analysis from the above entitled paper
DOI: 10.6084/m9.figshare.6510260.v1
title: Do doctors in dispensing practices with a financial conflict of interest prescribe more expensive drugs?

description: Data management and analysis from the above entitled paper
DOI: 10.6084/m9.figshare.6510095
title: Displaying (un)certainty in the User Interface of an information system used by firefighters: Mock-ups & raw data of the questionnaire

description: The raw data of the questionnaire with seven responses that was held among 60 firefighters of the region Amsterdam. Furthermore, the low- and high-fidelity mock-ups for an UI of the information system used by firefighters are included. This data is used and developed in the following study by Timo Lek: Displaying (un)certainty in the User Interface of an information system used by firefighters.
DOI: 10.6084/m9.figshare.6510095.v1
title: Mock-ups & raw data of the questionnaire

description: The raw data of the questionnaire with seven responses that was held among 60 firefighters of the region Amsterdam and the low- and high-fidelity mock-ups for an UI of an information system used by firefighters.
DOI: 10.6084/m9.figshare.6510095.v2
title: Displaying (un)certainty in an User Interface of the information system used by firefighters: Mock-ups & raw data of the questionnaire

description: The raw data of the questionnaire with seven responses that was held among 60 firefighters of the region Amsterdam. Furthermore, the low- and high-fidelity mock-ups for an UI of the information system used by firefighters are included. This data is used and developed in the following study by Timo Lek: Displaying (un)certainty in an User Interface of the information system used by firefighters.
DOI: 10.6084/m9.figshare.6510092
title: BIRD EMBRYOS PERCEIVE VIBRATORY CUES OF PREDATION RISK FROM CLUTCH MATES

description: Manuscript dataset
DOI: 10.6084/m9.figshare.6510092.v1
title: BIRD EMBRYOS PERCEIVE VIBRATORY CUES OF PREDATION RISK FROM CLUTCH MATES

description: Manuscript dataset
DOI: 10.6084/m9.figshare.6510077
title: Toxicity assessment of cobalt ferrite nanoparticles on wheat plants

description: Cobalt ferrite nanoparticles (NPs) have received increasing attention due to their widespread therapeutic and agricultural applicability. In the environmental field, dry powder- and ferrofluid-suspended cobalt ferrite NPs were found to be useful for removing heavy metals and metalloids from water, while diluted suspensions of cobalt ferrite NP have been promisingly applied in medicine. However, the potential toxicological implications of widespread exposure are still unknown. Since cobalt ferrite NPs are considered residual wastes of environmental or medical applications, plants may serve as a point-of-entry for engineered nanomaterials as a result of consumption of these plants. Thus, the aim of this study was to assess the effects of dry powder and fresh cobalt ferrite NP on wheat plants. Seven-day assays were conducted, using quartz sand as the plant growth substrate. The toxicity end points measured were seed germination, root and shoot lengths, total cobalt (Co) and iron (Fe) accumulation, photosynthetic pigment production, protein (PRT) production, and activities of catalase (CAT), ascorbate peroxidase (APX), and guaiacol peroxidase (GPX). Increasing total Co and Fe in plant tissues indicated that wheat plants were exposed to cobalt ferrite NP. Seed germination and shoot length were not sufficiently sensitive toxicity end points. The effective concentration (EC<sub>50</sub>) that diminished root length of plants by 50% was 1963 mg/kg for fresh ferrite NPs and 5023 mg/kg for powder ferrite NP. Hence, fresh ferrite NPs were more toxic than powder NP. Plant stress was indicated by a significant decrease in photosynthetic pigments. CAT, APX, and GPX antioxidant enzymatic activity suggested the generation of reactive oxygen species and oxidative damage induced by cobalt ferrite NP. More studies are thus necessary to determine whether the benefits of using these NPs outweigh the risks.