cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20192234.v1
title: Electronic supplementary material.zip

description: This study is based on two databases collected from a broad literature review: <strong>1</strong>) Primate fossil locations (please see electronic supplementary material) discovered in the Late Miocene (11.6 – 5.3 mya), Pliocene (5.3 – 2.58 mya), Early Pleistocene (2.58 – 0.77 mya), Middle Pleistocene (0.77– 0.129 mya) and Late Pleistocene (0.129 – 0.0117 mya). However, as the fossil sites of the catarrhines in the Pliocene are very scarce, especially regarding the Pongidae and Hylobatidae(Harrison, 2016), the reconstruction of the dispersal scenarios focused on the Pleistocene. <strong>2</strong>) Pongidae was extinct in the Late Pleistocene, so later information in the Holocene comes from historical geographic distributions of the existing Colobinae (from 1304), Cercopithecinae (from 1175), and Hylobatidae (from 1182): a remarkable 800-year period. Such information is from the records of Chinese local governmental historical archives, annals, journals, and books; more details have been given in our previous publications: (Li et al., 2020; Li et al., 2002). Public records categorize catarrhines into four different groups: 1) gibbons, called “Yuan” in Chinese, are characterized by long upper limbs, slim body structure, unique calls, and acrobatic behavior (Zhang, 2015; Zhou and Zhang, 2013). Their records appeared since the Zhou Dynasty (1027-221 BC) in art, mainly in paintings (Geissmann, 2008), and other social services, such as funeral services, being buried with the dead (Vogel, 2018); 2) snub-nosed monkeys (<em>Rhinopithecus</em>) with up-turned nostrils and sturdy body structure; 3) leaf-eating monkeys (<em>Presbytis</em>, <em>Trachypithecus</em>, <em>Pygathrix,</em> and <em>Semnopithecus</em>), showing slender body structure with typical arboreal lifestyle and special folivorous diets; and 4) macaques that are primarily terrestrial and morphologically quite different from the other groups (Li et al., 2020). Among the four, 1) belongs to the Hylobatidae (gibbons), containing Nomascus (4 species), <em>Hylobates</em> (1 species), and <em>Hoolock</em> (1 species); 2) and 3) are classified as the Colobinae (colobines), including snub-nosed monkeys (<em>Rhinopithecus</em>, five species) and langurs (<em>Trachypithecus, </em>six species; <em>Pygathrix, </em>one species; and <em>Semnopithecus, </em>one species); and 4) is regarded as the Cercopithecinae (<em>Macaca</em>)<em>,</em> consisting eight species (Li et al., 2018).
DOI: 10.6084/m9.figshare.20192234.v2
title: Southwest China, the last refuge of continental primates in East Asia

description: This study is based on two databases collected from a broad literature review: <strong>1</strong>) Primate fossil locations (please see electronic supplementary material) discovered in the Late Miocene (11.6 – 5.3 mya), Pliocene (5.3 – 2.58 mya), Early Pleistocene (2.58 – 0.77 mya), Middle Pleistocene (0.77– 0.129 mya) and Late Pleistocene (0.129 – 0.0117 mya). However, as the fossil sites of the catarrhines in the Pliocene are very scarce, especially regarding the Pongidae and Hylobatidae(Harrison, 2016), the reconstruction of the dispersal scenarios focused on the Pleistocene. <strong>2</strong>) Pongidae was extinct in the Late Pleistocene, so later information in the Holocene comes from historical geographic distributions of the existing Colobinae (from 1304), Cercopithecinae (from 1175), and Hylobatidae (from 1182): a remarkable 800-year period. Such information is from the records of Chinese local governmental historical archives, annals, journals, and books; more details have been given in our previous publications: (Li et al., 2020; Li et al., 2002). Public records categorize catarrhines into four different groups: 1) gibbons, called “Yuan” in Chinese, are characterized by long upper limbs, slim body structure, unique calls, and acrobatic behavior (Zhang, 2015; Zhou and Zhang, 2013). Their records appeared since the Zhou Dynasty (1027-221 BC) in art, mainly in paintings (Geissmann, 2008), and other social services, such as funeral services, being buried with the dead (Vogel, 2018); 2) snub-nosed monkeys (<em>Rhinopithecus</em>) with up-turned nostrils and sturdy body structure; 3) leaf-eating monkeys (<em>Presbytis</em>, <em>Trachypithecus</em>, <em>Pygathrix,</em> and <em>Semnopithecus</em>), showing slender body structure with typical arboreal lifestyle and special folivorous diets; and 4) macaques that are primarily terrestrial and morphologically quite different from the other groups (Li et al., 2020). Among the four, 1) belongs to the Hylobatidae (gibbons), containing Nomascus (4 species), <em>Hylobates</em> (1 species), and <em>Hoolock</em> (1 species); 2) and 3) are classified as the Colobinae (colobines), including snub-nosed monkeys (<em>Rhinopithecus</em>, five species) and langurs (<em>Trachypithecus, </em>six species; <em>Pygathrix, </em>one species; and <em>Semnopithecus, </em>one species); and 4) is regarded as the Cercopithecinae (<em>Macaca</em>)<em>,</em> consisting eight species (Li et al., 2018).
DOI: 10.21227/jb92-d280
title: dbl LSTM data

description: none
DOI: 10.25402/fon.20194238.v1
title: Supplementary Data – The effectiveness of aromatherapy and reflexology in neurodegenerative disorders: a systematic review and meta-analysis

description: Appendix – Search terms used PRISMA 2020 Checklist Supplementary Table 1 – Study characteristics
DOI: 10.25402/fon.20194238
title: Supplementary Data – The effectiveness of aromatherapy and reflexology in neurodegenerative disorders: a systematic review and meta-analysis

description: Appendix – Search terms used PRISMA 2020 Checklist Supplementary Table 1 – Study characteristics
DOI: 10.5281/zenodo.6782395
title: Transient Freeze-Thaw Responses to the 2018 and 2019 Fires near Batagaika Megaslump, Northeast Siberia

description: This repository contains the dataset for the Transient Freeze-Thaw Responses to the 2018 and 2019 Fires near Batagaika Megaslump, Northeast Siberia. All files are formatted as CSV. TD_Burn14_site1.csv contains thaw depth data at the site1 in the 2014 fire scar. TD_Burn14_site2.csv contains thaw depth data at the site2 in the 2014 fire scar. TD_Burn18.csv contains thaw depth data in the 2018 fire scar. TD_Unburn-Burn19.csv contains thaw depth data along the transect across the 2019 fire scar and unburned control site. TD_Unburn18.csv contains thaw depth data in the unburned control site for the 2018 fire scar. Temperature_TidbiT_190924-210916.csv contains hourly air and surface temperature data from 24 September 2019 to 16 September 2016. All data were taken by the TidbiT logger.
DOI: 10.5281/zenodo.6782394
title: Transient Freeze-Thaw Responses to the 2018 and 2019 Fires near Batagaika Megaslump, Northeast Siberia

description: This repository contains the dataset for the Transient Freeze-Thaw Responses to the 2018 and 2019 Fires near Batagaika Megaslump, Northeast Siberia. All files are formatted as CSV. TD_Burn14_site1.csv contains thaw depth data at the site1 in the 2014 fire scar. TD_Burn14_site2.csv contains thaw depth data at the site2 in the 2014 fire scar. TD_Burn18.csv contains thaw depth data in the 2018 fire scar. TD_Unburn-Burn19.csv contains thaw depth data along the transect across the 2019 fire scar and unburned control site. TD_Unburn18.csv contains thaw depth data in the unburned control site for the 2018 fire scar. Temperature_TidbiT_190924-210916.csv contains hourly air and surface temperature data from 24 September 2019 to 16 September 2016. All data were taken by the TidbiT logger.
DOI: 10.17034/7567f96e-8c23-45ad-93a8-0910301dd170
title: Photographic record of late medieval habitation sites in County Tyrone and County Armagh

description: The images within this dataset highlight the potential key habitation sites evident within a late medieval Gaelic landscape. From the castle site of the Ó Neill, the original tower house replaced by a plantation construction, to earthworks and ringforts, to crannogs. Though the latter sites are commonly associated with the Early Christian period, they may be the key to understanding the habitation patterns of late medieval Gaelic society in Ulster.
DOI: 10.11588/data/fabjei/ub1fxx
title: heidata_publication.zip

description: :unav
DOI: 10.5281/zenodo.6758941
title: Social Innovations for Circularity in the Built Environment – a Scoping Review and Classification. Supplementary Data to the Bibliometric Review.

description: To transition the built environment (BE) towards circularity, i.e., maximizing the time resources spend in the BE, thus minimizing negative environmental impacts of resource usage, social innovations (SI) – understood as new ways of doing, organizing, framing, and knowing – are just as important as technological advancements. This article provides an overview of the state of the knowledge regarding SI that contribute to circularity in the BE, and proposes a framework for coherently classifying such SI in terms of their main categories and effects. To identify and understand the current knowledge regarding social innovations (SI) that contribute to circularity in the built environment (BE), a bibliometric review of scientific literature is conducted. It shows that the term social innovation is not frequently used in this contexts although the buzzwords circularity and circular economy are themselves often framed as SI. To assess the characteristics and contribution of SI to circularity in the BE, a scoping review that includes grey literature into the context was conducted and a framework developed to classify predominant SI using concepts from transition studies as well as the systems thinking approach. The framework is designed to help assess the potential of SI and to identify research and/or action gaps. Key findings are (1) There is a broad diversity of SIs that contribute to circularity in the BE already in the focus of research, although they are not always identified as such; (2) Most SI focus on either the design or the demolition phase (i.e., market related phases), whereas user-centered SI are less frequently discussed; and (3) It is crucial to also consider potential sustainability goal conflicts in order to guide policies that address SI as a solution. These datasets are the basis to the bibliometric literature review.
DOI: 10.5281/zenodo.6758940
title: Social Innovations for Circularity in the Built Environment – a Scoping Review and Classification. Supplementary Data to the Bibliometric Review.

description: To transition the built environment (BE) towards circularity, i.e., maximizing the time resources spend in the BE, thus minimizing negative environmental impacts of resource usage, social innovations (SI) – understood as new ways of doing, organizing, framing, and knowing – are just as important as technological advancements. This article provides an overview of the state of the knowledge regarding SI that contribute to circularity in the BE, and proposes a framework for coherently classifying such SI in terms of their main categories and effects. To identify and understand the current knowledge regarding social innovations (SI) that contribute to circularity in the built environment (BE), a bibliometric review of scientific literature is conducted. It shows that the term social innovation is not frequently used in this contexts although the buzzwords circularity and circular economy are themselves often framed as SI. To assess the characteristics and contribution of SI to circularity in the BE, a scoping review that includes grey literature into the context was conducted and a framework developed to classify predominant SI using concepts from transition studies as well as the systems thinking approach. The framework is designed to help assess the potential of SI and to identify research and/or action gaps. Key findings are (1) There is a broad diversity of SIs that contribute to circularity in the BE already in the focus of research, although they are not always identified as such; (2) Most SI focus on either the design or the demolition phase (i.e., market related phases), whereas user-centered SI are less frequently discussed; and (3) It is crucial to also consider potential sustainability goal conflicts in order to guide policies that address SI as a solution. These datasets are the basis to the bibliometric literature review.
DOI: 10.17034/c0f2a247-c674-4075-ba68-2f2b0da01dbe
title: Townland analysis across the estates of the Lucht Tighe and the Fews

description: To understand the late medieval Gaelic landscape, it is essential to conduct a landscape archaeology study at a townland level. This dataset covers the townlands that make up the late medieval estates within the Lucht Tighe, County Tyrone, and the Fews, County Armagh. The townlands can be identified on the 1609 Bodley maps and can be matched to those still in existence. The townland etymology was investigated, along with cartographic evidence from the Bodley maps, the 1st and 2nd Ordnance Survey Maps along with modern ordnance maps, aerial imagery and identified Sites and Monuments. This allows to researcher to identify possible habitation patterns. Each townland has been mapped and possible new sites have also been identified.
DOI: 10.5281/zenodo.6573920
title: Neuronal data sample from PMd of non-human primates (Macaca Mulatta) performing a countermanding reaching task

description: Brief presentation of the subjects and task performed Two adult male rhesus macaque monkeys (Macaca mulatta; P, C) performed a countermanding reaching task. All experimental procedures, animal care, housing, and surgical procedures conformed with European (Directive 86/609/ECC and 2010/63/UE) and Italian (D.L. 116/92 and D.L. 26/2014) laws on the use of nonhuman primates in scientific research and were approved by the Italian Ministry of Health. In both monkeys a 96 channels Utah arrays (BlackRock Microsystem, USA) was employed to record neuronal activity from the dorsal premotor cortex (PMd) contralateral to the arm employed during the task. Behavioral task Monkeys performed a countermanding reaching task interacting with visual stimuli presented on a touch-screen. Each trial started with the presentation of a central stimulus (red dot) that they had touch with their finger and hold (400-900ms). Thereafter the central stimulus disappeared and, simultaneously, a target appeared (go signal) randomly at one of two opposite positions (left or right). In no-stop trials to perform a correct trial, monkeys had to move their hand form the central target, touch peripheral target and to maintain their fingers on it for a random time (400-800 ms). In stop trials at a variable delay (Stop signal delay, SSD) after the go signal was presented, the central stimulus reappeared (Stop signal) instructing the monkey to keep the hand on the starting position (additional holding time; 400-1000 ms) to perform a correct-stop trial. If the monkey moved the hand during stop trials, the trial was considered a wrong-stop trial. No-stop and stop trials were randomly intermingled in such a way that the no-stop trials were more frequent. Recordings The neuronal activity from each electrode was recorded by employing a Tucker Davies Technologies RZ2 system (sampling rate at 24.4 Khz). Single unit activity was then isolated by using Kilosort (Pachitariu, et al. in Advances in Neural information processing systems (2016) 4448-4456). Data and code reproduce and are linked the main figures and results of the paper "Neuronal population dynamics during motor plan cancellation in non-human primates" , <em>Proceedings of the National Academy of Sciences</em> (<em>PNAS</em>) For further inquiry please contact: stefano.ferraina@uniroma1.it or pierpaolo.pani@uniroma1.it
DOI: 10.5281/zenodo.6573919
title: Neuronal data sample from PMd of non-human primates (Macaca Mulatta) performing a countermanding reaching task

description: Brief presentation of the subjects and task performed Two adult male rhesus macaque monkeys (Macaca mulatta; P, C) performed a countermanding reaching task. All experimental procedures, animal care, housing, and surgical procedures conformed with European (Directive 86/609/ECC and 2010/63/UE) and Italian (D.L. 116/92 and D.L. 26/2014) laws on the use of nonhuman primates in scientific research and were approved by the Italian Ministry of Health. In both monkeys a 96 channels Utah arrays (BlackRock Microsystem, USA) was employed to record neuronal activity from the dorsal premotor cortex (PMd) contralateral to the arm employed during the task. Behavioral task Monkeys performed a countermanding reaching task interacting with visual stimuli presented on a touch-screen. Each trial started with the presentation of a central stimulus (red dot) that they had touch with their finger and hold (400-900ms). Thereafter the central stimulus disappeared and, simultaneously, a target appeared (go signal) randomly at one of two opposite positions (left or right). In no-stop trials to perform a correct trial, monkeys had to move their hand form the central target, touch peripheral target and to maintain their fingers on it for a random time (400-800 ms). In stop trials at a variable delay (Stop signal delay, SSD) after the go signal was presented, the central stimulus reappeared (Stop signal) instructing the monkey to keep the hand on the starting position (additional holding time; 400-1000 ms) to perform a correct-stop trial. If the monkey moved the hand during stop trials, the trial was considered a wrong-stop trial. No-stop and stop trials were randomly intermingled in such a way that the no-stop trials were more frequent. Recordings The neuronal activity from each electrode was recorded by employing a Tucker Davies Technologies RZ2 system (sampling rate at 24.4 Khz). Single unit activity was then isolated by using Kilosort (Pachitariu, et al. in Advances in Neural information processing systems (2016) 4448-4456). Data and code reproduce and are linked the main figures and results of the paper "Neuronal population dynamics during motor plan cancellation in non-human primates" , <em>Proceedings of the National Academy of Sciences</em> (<em>PNAS</em>) For further inquiry please contact: stefano.ferraina@uniroma1.it or pierpaolo.pani@uniroma1.it
DOI: 10.5285/eba8654f-fdc8-4d69-91f9-e43aa4bcfe26
title: Perfluoroalkyl substances (PFAS) concentrations in the marine Arctic environment collected between 26-Aug-2019 to 28-Aug-2019

description: Samples of snow, sea ice, seawater (0.5 m and 5 m depths) and meltponds were collected from two ice-covered stations located in the Barents Sea (81 N), during the "Nansen Legacy Q3" summer cruise of the Norwegian research vessel Kronprins Haakon on 26-28 August 2019. Perfluoroalkyl substances (PFAS) concentrations, salinity and stable oxygen isotopes were measured in all samples to determine sources and environmental fate of PFAS during late summer. NERC ENVISION Doctoral Training Centre (NE/L002604/1). NERC and the German Federal Ministry of Education and Research (BMBF) funded Changing Arctic Ocean program EISPAC project (NE/R012857/1). The Nansen Legacy research is funded by the Research Council of Norway (# 276730).
description: Environmental samples were collected in the European High Arctic during the "Nansen Legacy Q3" summer cruise of the Norwegian research vessel Kronprins Haakon on 26-28 August 2019. Sea ice cores (n = 4) at each site were drilled (spaced ~ 1 m intervals) and then immediately cut into horizontal layers (n = 7-10) that were between 0.1 and 0.2 m in length. Melt ponds samples (n = 3) at each site were collected. Melt ponds were covered by a thin layer of ice, which was removed before sampling water (1 L). Snow samples (n = 4) at each site were collected above each sea ice core (approximately 0.25 m2). Seawater samples were collected approximately 20 m from snow and sea ice samples, at 0.5 and 5 m below sea ice. PFASs were analysed using solid phase extraction (SPE) which took place onboard the ship with further analysis conducted at Helmholtz-Zentrum Hereon, Germany. Stable oxygen isotope and salinity analysis was undertaken at Lancaster University, UK.
description: PFAS: HPLC-MS/MS, using an HP 1100 LC system (Agilent Technologies, U.S.A.) coupled to an API 4000 triple quadrupole mass spectrometer (AB Sciex, U.S.A.). Analyst Software Version 1.5. Salinity: Hach HQd40 logger with the CDC401 probe. Stable isotope: Elementar pyrocube elemental analyzer linked to an Isoprime 100 mass spectrometer).
description: Mass-labelled chemical standards were used as recovery standards to assess analytical performance. A 13-point mixed-standard calibration curve was used for quantification. Sample replicates (n = 7) were used determine analytical method performance. Method detection limits (MDL) were calculated from laboratory blanks (n = 5; SPE-filtered milliQ water) and field blanks (n = 2; collected washings of field sampling equipment with SPE-filtered milliQ water).
DOI: 10.6084/m9.figshare.20194875
title: Epigenetic control of the imprinted growth regulator <i>Cdkn1c</i> in cadmium-induced placental dysfunction

description: Cadmium (Cd) is a toxic metal ubiquitous in the environment. <i>In utero</i>, Cd is inefficiently transported to the foetus but causes foetal growth restriction (FGR), likely through impairment of the placenta where Cd accumulates. However, the underlying molecular mechanisms are poorly understood. Cd can modulate the expression of imprinted genes, defined by their transcription from one parental allele, which play critical roles in placental and foetal growth. The expression of imprinted genes is governed by DNA methylation at Imprinting Control Regions (ICRs), which are susceptible to environmental perturbation. The imprinted gene <i>Cdkn1c/CDKN1C</i> is a major regulator of placental development, is implicated in FGR, and shows increased expression in response to Cd exposure in mice. Here, we use a hybrid mouse model of <i>in utero</i> Cd exposure to determine if the increase in placental <i>Cdkn1c</i> expression is caused by changes to ICR DNA methylation and loss of imprinting (LOI). Consistent with prior studies, Cd causes FGR and impacts placental structure and <i>Cdkn1c</i> expression at late gestation. Using polymorphisms to distinguish parental alleles, we demonstrate that increased <i>Cdkn1c</i> expression is not driven by changes to DNA methylation or LOI. We show that <i>Cdkn1c</i> is expressed primarily in the placental labyrinth which is proportionally increased in size in response to Cd. We conclude that the Cd-associated increase in <i>Cdkn1c</i> expression can be fully explained by alterations to placental structure. These results have implications for understanding mechanisms of Cd-induced placental dysfunction and, more broadly, for the study of FGR associated with increased <i>Cdkn1c/CDKN1C</i> expression.