cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11302229.v1
title: Data For "New Approach to Understanding the Vertical Distribution of Biomass Burning Carbon Monoxide Based on Climatological MOPITT Vertical Measurements"

description: The data placed in figure_1.mat contains the set of three 2-dimensional fields corresponding to the following: (a) the GFED total carbon emissions (g/m2) from 2000 to 2018 over the high fire regions (cutoff is based on a 3-year running local sum of 30g/m2); (b) the spatial distribution of the normalized standard deviation of the MOPITT Co surface level concentration when DFS&gt;1.5; and (c) the biomass burning regions constrained where the normalized standard deviation of the MOPITT CO surface concentration is larger than 0.30, over land, and located between 60oS and 60oN. The latitude and Longitude are also given lat and lon. The data placed in figure_2.mat contains the biomass burning emission regions constrained by the normalized standard deviation greater than 0.30 on each pressure level respectively from 900mb to 300mb. The variable name is re_# where 9 to 3 respectively correspond to 900mb to 300mb. The data placed in figure_3_s3.mat contains the time series of average CO concentrations at the surface and every vertical level to which the respective biomass burning CO has been lofted from the surface to 300mb. This is a function of the respective regions, based on the results in Table 1 of the referenced paper. shortname_#_ts where “shortname” can be: mex (Mexico), sam (South America), caf (Central Africa), saf (Southern Africa), csea (Continential Southeast Asia), mc (Maritime Continent), and aus (Australia), and the # means the same as above. The data placed in figure_s1.mat contains the weekly time series of the row sums of the vertical sensitivity retrieval matrix averaged over the spatial regions given in Fig 1c from 1000mb to 100mb in each file k_shortname, where shortname is the same as in figure_3_s3.mat. The time series of the weekly averaged retrieved CO concentration at 700mb over each region is also given as MRP700_shortname.
DOI: 10.6084/m9.figshare.11944263.v1
title: IJGIS_Data.zip

description: · Geodatabase IJGIS_FL.gdb with two features (Hospitals and ZIP_Code_Area) and table (OD_AllFlow_Time). The feature “Hospitals” contains fields OBJECTID and NUMBEDS. The feature “ZIP_Code_Area” contains fields ZONEID and Popu. The O-D travel time table “OD_AllFlow_Time” contains fields PatientZIP_ZoneID (corresponding to ZONEID in the feature ZIP_Code_Area), Hospital_ObjectID (corresponding to OBJECTID in the feature Hospitals), and Total_Minutes (travel time in minutes). All feature, table and their associated field names are self-explanatory. · ArcGIS toolkit program file Accessibility.tbx, with four associated Python scripts grouped under folder Scripts. As stated previously, this case study uses the 4<sup>th</sup> tool “Generalized 2SFCA (w External Distance Table)”, with interface shown in Figure 2. For installing or accessing an ArcGIS tool, refer to Wang (2015: 90).
DOI: 10.6084/m9.figshare.12960212.v1
title: What you see is what you get: Delineating the urban jobs-housing spatial distribution at a parcel scale by using street view imagery

description: The compressed package (Study_code.zip) contains the code files implemented by an under review paper ("What you see is what you get: Delineating urban jobs-housing spatial distribution at a parcel scale by using street view imagery based on deep learning technique").<br>The compressed package (input_land_parcel_with_attributes.zip) is the sampled mixed "jobs-housing" attributes data of the study area with multiple probability attributes (Only working, Only living, working and living) at the land parcel scale.<br>The compressed package (input_street_view_images.zip) is the surrounding street view data near sampled land parcels (input_land_parcel_with_attributes.zip) with the pixel size of 240*160 obtained from Tencent map (https://map.qq.com/).<br><br>The compressed package (output_results.zip) contains the result vector files (Jobs-housing pattern distribution and error distribution) and file description (Readme.txt).<br>This project uses some Python open source libraries (Numpy, Pandas, Selenium, Gdal, Pytorch and sklearn). This project complies with the GPL license.<br>Numpy (https://numpy.org/) is an open source numerical calculation tool developed by Travis Oliphant. Used in this project for matrix operation. This library complies with the BSD license.<br>Pandas (https://pandas.pydata.org/) is an open source library, providing high-performance, easy-to-use data structures and data analysis tools. This library complies with the BSD license.<br>Selenium(https://www.selenium.dev/) is a suite of tools for automating web browsers.Used in this project for getting street view images.This library complies with the BSD license.<br>Gdal(https://gdal.org/) is a translator library for raster and vector geospatial data formats.Used in this project for processing geospatial data.This library complies with the BSD license.<br>Pytorch(https://pytorch.org/) is an open source machine learning framework that accelerates the path from research prototyping to production deployment.Used in this project for deep learning.This library complies with the BSD license.<br>sklearn(https://scikit-learn.org/) is an open source machine learning tool for python.Used in this project for comparing precision metrics.This library complies with the BSD license.<br>
DOI: 10.17632/h98925j75g
title: Tumour and local lymphoid tissue interaction determines prognosis in high grade serous ovarian cancer

description: Tertiary lymphoid structure (TLS) is an ectopic lymphoid organ found in some tumours. The presence of TLS is recently proposed as a predictive biomarker for immune checkpoint inhibitors (ICI) in mutation-driven tumours. TLS is also associated with prognosis in copy number-driven tumours, including high grade serous ovarian cancer (HGSOC), although the function of TLS and its interaction with copy-number alterations in HGSOC is not fully understood. In the current study, we comprehensively analyse immune profile, copy number profile and quantitative imaging profile from 242 HGSOC patients (HH cohort), and combine these with two public single cell RNA-sequencing datasets (Lambrechts cohorts; n=9, 29,999 cells). TLS-high HGSOC patients show significantly better progression free survival in both HH and TCGA cohorts. We show that presence of TLS in HGSOC tumours is associated with B-cell maturation, resulting in higher and more specific immunoglobulin production; TLS also leads to more cytotoxic tumour-specific T-cells activation and proliferation.  Through integrated analysis of single cell RNA-sequencing and whole exome sequencing data, we reveal that the copy number loss of IL15 and CXCL10 may limit TLS formation in HGSOC; we also propose a list of genes that may dysregulate TLS function. A candidate gene, DCAF15, is found to confer resistance to NK-mediated cytotoxicity in HGSOC cell lines. Lastly, we develop a radiomics-based signature to predict presence of TLS, which independently predicts PFS in both HGSOC patients and ICI-treated NSCLC patients. Overall, we reveal that TLS coordinates intratumoural B-cell and T-cell response against HGSOC tumour, while cancer genome evolves to counteract TLS formation and function.
DOI: 10.17632/hjbyjsh8ky
title: The Effect of Humalite in Improving Soil Nitrogen Availability and Plant Nutrient Uptake for Higher Yield and Oil Content in Canola

description: Data generated during the flowering and maturity stage trials.
DOI: 10.6084/m9.figshare.14673156.v1
title: S1_Data.csv

description: <b>S1 Data. Data used in this study. </b> Genomes included in the study and their annotations. The capsule locus type (K_serotype), LPS type (O_serotype), Sequence Type (ST), N50, L90, genome size and number of contigs are indicated for each assembly, along with the total length of plasmid DNA (mlplasmid _plasmid_size), number of conjugative elements (n_CONJ) detailed in each MPF type (type F, G, I, T) and number of contigs matching at least one sequence of the PlasmidFinder database (n_plasmidfinder). We also included the inferred gene gains (gene_gains) and losses (gene_losses) for each terminal branch corresponding to the assemblies. Finally, the number of capsular pseudogenes and missing genes (n_capsular_pseudogene) and the state of the capsule locus inferred are included.
DOI: 10.6084/m9.figshare.23662029.v1
title: Land Restitution Sentences - Colombia

description: The sentences provide information on the cases of Valencia (49 systematized), Turbo (57 systematized) and El Tablón (266 was systematized), in Colombian.
DOI: 10.6084/m9.figshare.28778765.v1
title: Supplementary material for: "Reduced male pheromone production and an increased female ratio promote same-sex sexual behaviour in male Indian meal moths"

description: Experimental evolution was used to study male same-sex sexual behaviour (SSSB). Male SSSB frequency increased when females were present in the arena. Males missing hair pencils were subject to more rival male mating attempts.Findings highlight the role of male pheromones in close-range sex identification. SSSBs may be an outcome of a promiscuous mating system.
DOI: 10.17632/3v4h7b3p8n
title: Kumari and Chakrabarti

description: This contains the results of our magma ocean box-modeling study.
DOI: 10.17632/yhypbdxvrs
title: Neutrino oscillation parameter sampling with MonteCUBES

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We present MonteCUBES (“Monte Carlo Utility Based Experiment Simulator”), a software package designed to sample the neutrino oscillation parameter space through Markov Chain Monte Carlo algorithms. MonteCUBES makes use of the GLoBES software so that the existing experiment definitions for GLoBES, describing long baseline and reactor experiments, can be used with MonteCUBES. MonteCUBES consists of two main parts: The first is a C library, written as a plug-in for GLoBES, implementing the Marko... Title of program: MonteCUBES (Monte Carlo Utility Based Experiment Simulator). Catalogue Id: AEFJ_v1_0 Nature of problem Since neutrino masses do not appear in the standard model of particle physics, many models of neutrino masses also induce other types of new physics, which could affect the outcome of neutrino oscillation experiments. In general, these new physics imply large dimensional parameter spaces that are difficult to explore using classical methods such as multi-dimensional projections and minimisations, such as those used in GLoBES [1, 2]. Versions of this program held in the CPC repository in Mendeley Data AEFJ_v1_0; MonteCUBES (Monte Carlo Utility Based Experiment Simulator).; 10.1016/j.cpc.2009.09.014
DOI: 10.5522/04/17099054.v1
title: Set of MRI data to test the MELD prediction pipeline

description: Anonymised and defaced MRI scans (T1w and FLAIR images) from one patient with FCD from the Great Ormond Street Hospital. <br>This data enables to test the MELD prediction pipeline, and create the final MELD reports containing pictures of the native MRI data with the highlighted predictions.<br><br>More details of the project at :Spitzer, Hannah, Mathilde Ripart, Kirstie Whitaker, Antonio Napolitano, Luca De Palma, Alessandro De Benedictis, Stephen Foldes, et al. 2021. “Interpretable Surface-Based Detection of Focal Cortical Dysplasias: A MELD Study.” https://doi.org/10.1101/2021.12.13.21267721.<br><br>
DOI: 10.6084/m9.figshare.13134950.v1
title: NA0.78.ZMX

description: Zemax file for NA = 0.78 objective
DOI: 10.6084/m9.figshare.21983177.v1
title: Supplementary Material for: Safety and Feasibility of a Novel Externally Cooled Bronchoscopic Radiofrequency Ablation Catheter for Ablation of Peripheral Lung Tumours: A First-In-Human Dose Escalation Study

description: <b><i>Background:</i></b> Radiofrequency ablation (RFA) is an established modality for percutaneous ablation of non-small cell lung cancer (NSCLC) in medically inoperable patients but is underutilized clinically due to side effects. We have developed a novel, completely endobronchial RFA catheter with an externally cooled electrode. <b><i>Objectives:</i></b> The objective of this study was to establish the safety and feasibility of bronchoscopic RFA using a novel, externally cooled catheter for ablation of peripheral NSCLC. <b><i>Methods:</i></b> Patients with stage I biopsy-confirmed NSCLC underwent bronchoscopic RFA of tumour 7 days prior to lobectomy. The RFA catheter was delivered bronchoscopically to peripheral NSCLC lesions, guided by radial endobronchial ultrasound, with positioning confirmed using intra-procedural cone beam CT. Pre-operative CT chest and histologic examination of resected specimens were used to establish distribution/uniformity of ablation and efficacy of tumour ablation. <b><i>Results:</i></b> RFA in the first patient was complicated by dispersal of heated saline due to cough, resulting in ICU admission. The patient recovered fully and underwent uncomplicated lobectomy. Subsequently, the protocol was altered to mandate neuromuscular blockade with a pre-determined dose escalation, with algorithm-restricted energy (kJ) and irrigated saline volume (mL) constraints. A further 10 patients consented and seven underwent successful bronchoscopic RFA of peripheral NSCLC. No significant adverse events were noted. Ablation zone included tumour in all cases (proportion of tumour ablated ranged 8–72%), with uniform necrosis of tissue within ablation zones observed at higher energy levels. Ablation zone diameter correlated with RFA energy delivered (<i>R</i><sup>2</sup> = 0.553), with maximum long axis diameter of ablation zone 3.1 cm (22.9 kJ). <b><i>Conclusion:</i></b> Bronchoscopic RFA using an externally cooled catheter is feasible, appears safe, and achieves uniform ablation within the treatment zone. Uncontrolled escape of heated saline poses a major safety risk but can be prevented procedurally through neuromuscular blockade and by limiting irrigation.
DOI: 10.6084/m9.figshare.27931569.v1
title: Diáspora Venezolana - RRSS (+tiktok)

description: Data Set - TikTok #DisporaVenezolana
DOI: 10.6084/m9.figshare.3517751.v1
title: Appendix A. Location of the Cherry Creek study reach in the Tonto National Forest, the USGS stream flow gage used for hydrologic analyses, and the location of the Salt River, Arizona, USA.

description: Location of the Cherry Creek study reach in the Tonto National Forest, the USGS stream flow gage used for hydrologic analyses, and the location of the Salt River, Arizona, USA.
DOI: 10.17632/7r9ws6vs6z
title: Adult normal PVR

description: Normal post void residual urine in healthy adults
DOI: 10.17632/f5t4kvmn8g
title: EP-traffic-mortality-and-policy-interventions-dataset

description: The EP-Traffic-Mortality-and-Policy-Interventions Dataset provides road safety data for 2010–2020. It includes two primary and five secondary data subsets. The primary data subsets include road accident mortality and traffic safety policy interventions data. The secondary data subsets include accident mortality subsets for different time scales and administrative levels.
DOI: 10.17632/jxrwf9ddy5
title: ENDOMETRIAL POLYPS

description: Cell capture and cDNA synthesis Using single cell 3' Library and Gel Bead Kit V3 (10x Genomics, 1000075) and Chromium Single Cell B Chip Kit (10x Genomics, 1000074), the cell suspension (300-600 living cells per microliter determined by Count Star) was loaded onto the Chromium single cell controller (10x Genomics) to generate single-cell gel beads in the emulsion according to the manufacturer’s protocol. In short, single cells were suspended in PBS containing 0.04% BSA. About 6,000 cells were added to each channel, and the target cell will be recovered and estimated to be about 3,000 cells. Captured cells were lysed and the released RNA were barcoded through reverse transcription in individual GEMs. Reverse transcription was performed on a S1000TM Touch Thermal Cycler (Bio Rad) at 53°C for 45 min, followed by 85°C for 5 min, and hold at 4°C. The cDNA was generated and then amplified, and quality assessed using an Agilent 4200 (performed by CapitalBio Technology, Beijing). According to the manufacture’s introduction, Single-cell RNA-seq libraries were constructed using Single Cell 3’ Library and Gel Bead Kit V3. The libraries were finally sequenced using an Illumina Novaseq6000 sequencer with a sequencing depth of at least 100,000 reads per cell with pair-end 150 bp (PE150) reading strategy (performed by CapitalBio Technology, Beijing)
DOI: 10.6084/m9.figshare.3529808.v1
title: Appendix C. Design of the main experiment.

description: Design of the main experiment.
DOI: 10.17632/j955mxnyyf
title: Data of : Engaging for Change - Investigating YouTube videos and users comments

description: This dataset contain 168 selected YouTube videos on Climate change , their users comments and their properties
DOI: 10.6084/m9.figshare.1104394.v1
title: Tabla 5. Promedio de citas MOOC por año

description: Tabla 5. Promedio de citas MOOC por año
DOI: 10.17632/fpctx3svzd
title: MyNursingHome

description: MyNursingHome is a fully labelled image dataset collected in several elderly home cares in Malaysia to facilitate broad use of image classification and detection. MyNursingHome is very practical as the dataset contains 37,500 digital images from 25 different indoor object categories commonly found in elderly care centre, including basket bin, bed, bench, cabinet, call bell, cane stick, chair, door, electric socket, fan, fire extinguisher, handrail, human being, rack, refrigerator, shower, sink, sofa, table, television, toilet seat, walker, wardrobe, water dispenser, wheelchair and all of which are object for indoor detection.
DOI: 10.6084/m9.figshare.21647123.v4
title: Controls on stable isotopes in monsoonal precipitation across the Bay of Bengal: atmosphere and surface analysis

description: Modeled stable isotope data of precipitation and water vapor from IsoGSM2 Observed precipitation stable isotope data at Darjeeling and Tezpur
DOI: 10.17632/47dz8598rc
title: Diabetic Retinopathy

description: The Kaggle dataset is well-known and widely used for the classification of diabetic retinopathy (DR). The proposed dataset is divided into 70% for training with 2076 total images (1050 for DR and 1026 No_DR). Moreover, 30% for testing and validation with 231(113 DR and 118 No_DR) and 531 (245 DR and 286 No_DR) images respectively. This dataset contains a total number of 2838 of retinal images
DOI: 10.17632/5pb4v8gfhc
title: Mifepristone_Mass spectrometric data

description: Mass spectrometric data was generated and reported from AZ as a part of in-kind contribution to the project.  For the solid state and the AIBN solution stress experiment degraded sample vials were sent to AZ (Macclesfield), where they were measured using the MS instruments. The data is confidential.
DOI: 10.6084/m9.figshare.14061428.v6
title: Radar_Rainforest

description: The zip file ('Mat.zip') coontains monthly radar signals and climatic data in "mat" format for reproducing figures in Tao et al. <br> The three nc files ("Americas_intact_radar.nc", "Africa_intact_radar.nc", "Asia_intact_radar.nc") contain merged radar signals (1992-2018) for American, African, and Asian intact tropical rainforest pixels (0.25 degree each). <br> "Amazonia_radar_Boulton_etal_mask.mat" and "Amazonia_radar_Boulton_etal_mask.nc" contain the merged radar signal (1992-2018) for intact Amazonian rainforests defined by Boulton et al. 2022. Nature Climate Change, 12, 271-278. <br> <br> <br> <br>
DOI: 10.6084/m9.figshare.26172586.v1
title: Anomalous flocking in nonpolar granular Brownian vibrators_RawData_ParticlesPositions_Velocity

description: Using Brownian vibrators, we investigated the structures and dynamics of quasi-2D granular materials, with packing fractions ($\phi$) ranging from 0.111 to 0.832. Our observations revealed a remarkable large-scale flocking behavior in hard granular disk systems, encompassing four distinct phases: granular fluid, flocking fluid, poly-crystal, and crystal. Anomalous flocking emerges at $\phi$ = 0.317, coinciding with a peak in local density fluctuations, and ceased at $\phi$ = 0.713 as the system transitioned into a poly-crystal state. The poly-crystal and crystal phases resembled equilibrium hard disks, while the granular and flocking fluids differed significantly from equilibrium systems and previous experiments involving uniformly driven spheres. This disparity suggests that collective motion arises from a competition controlled by volume fraction, involving an active force and an effective attractive interaction resulting from inelastic particle collisions. Remarkably, these findings align with recent theoretical research on the flocking motion of spherical active particles without alignment mechanisms.
DOI: 10.17632/vn7kh4y2fm
title: Revealing melt pool dynamics during laser temporal shaping directed energy deposition of 316L stainless steel

description: A three-dimensional thermofluidic coupling transport model of laser temporal shaping directed energy deposition (LTS-DED) for 316L stainless steel is established to investigate the influences of three laser temporal modes on heat transport and fluid flow, and the mechanisms of remelting and macro/microstructural formation of the melt track are elucidated. In three laser temporal modes, an inward vortex flow pattern is observed in the melt pool due to a positive thermocapillary coefficient induced by the oxygen from the oxidation-deoxidation reaction. In a given continuous wave (CW) mode, the melt pool only undergoes the constraint solidification process; and the evolution processes of the heat transport, fluid flow, and pool morphology are stable. The as-deposited sample exhibits the coarsest microstructure dominated by columnar grains. In the given two pulsed wave (PW) modes, the melt pools alternately undergo constraint solidification and free solidification processes, as-deposited samples are predominated by free solidification zones. The periodic remelting phenomenon leads to the periodic fish-scale structures and discrete bands on the surface and interior of the melt track, respectively. The discrete bands are determined by the maximum contour of the regions scanned by the solidification interface during single-pulse remelting. The high-frequency PW mode produces relatively smooth fish-scale structures and low-angle discrete bands. Additionally, the high-frequency PW mode inhibits the constraint solidification zone and CET behavior and results in cross-band columnar grains at the discrete bands. However, in the low-frequency PW mode, constraint solidification zones dominated by coarse grains appear near the discrete zone.
DOI: 10.6084/m9.figshare.19591441.v1
title: Sample Gantt Chart

description: Sample Gantt Chart
DOI: 10.6084/m9.figshare.23937879.v1
title: Kern_Lr47 transcriptome assembly

description: To identitify the candidate gene of <i>Lr47</i>, we first generated RNA-seq reads from<i> Pt</i>-inoculated leaves of Kern <i>Lr47</i>. The data were assembled de novo using Spades v3.14.1.