cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0133838.10fu
title: SH0133838.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0133839.10fu
title: SH0133839.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive145686.20250331.9.3
title: Helicobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive145686.20251217.10
title: Helicobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.eczpfu
title: Occurrence Download

description: A dataset containing 419 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendropsophus branneri (Cochran, 1948)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 419 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003163-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.srke22
title: Occurrence Download

description: A dataset containing 628 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendropsophus brevifrons (Duellman & Crump, 1974)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 628 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003165-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a4jx2a
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendropsophus haraldschultzi (Bokermann, 1962)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 57 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003166-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8f45js
title: Occurrence Download

description: A dataset containing 459 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendropsophus leali (Bokermann, 1964)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 459 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003167-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s4xf2r
title: Occurrence Download

description: A dataset containing 1408 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendropsophus leucophyllatus (Beireis, 1783)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1408 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003168-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28674503
title: Supplementary Material for: Emulsifier-induced changes to the human skin barrier – Connection to ceramide profiles and assessment as a skin lesion model

description: Emulsifiers are common excipients in dermal products stabilizing formulations such as creams and emulsions. But due to their potential for skin irritation, emulsifiers for pharmaceutical use should be tested regarding their tolerability before introducing them to the skin of patients. In this study, a systematic investigation with six oil in water (o/w)-emulsifiers was performed on the forearms of 12 healthy human volunteers, six female and six male. We analyzed the effects of pharmaceutical emulsifiers on the macroscopic skin health parameters measured as trans-epidermal water loss (TEWL) and skin hydration and measured the ceramide profile of the treated skin sites using liquid chromatography coupled to mass spectrometry (LC-MS) in order to assess the skin tolerability of the investigated emulsifiers. In a second step, a Partial Least Squares Regression was employed to investigate relationships between changes in the ceramide profile to changes in the TEWL of skin treated with a non-ionic as well as an anionic emulsifier. Skin health measurements showed that the applied emulsifiers inflicted no significant changes compared to the water-treated sample, demonstrating a remarkable skin tolerability. The employed regression model showed a good fit as well as adequate prediction and identified ceramide species associated with impaired skin barrier function. Furthermore, it was found that the relationship between the ceramide profile and the skin barrier function in emulsifier-induced skin damage shows distinct similarities to the interplay of ceramides and skin barrier function in lesional skin linked to Atopic Dermatitis (AD), hinting towards a common underlying mechanism and opening up possibilities to simulate disease-related changes to the skin for the development of skin damage models. In conclusion, these detailed investigations yield insight into possible mechanisms of emulsifier induced skin damage and show its versatility in the investigation of pharmaceutical emulsifiers for formulation development as well as basic research.
DOI: 10.5281/zenodo.15093347
title: animal
DOI: 10.5281/zenodo.15093348
title: animal
DOI: 10.6084/m9.figshare.28674506
title: Supplementary Material for: The first Colombian patient with CDH3-related hypotrichosis with juvenile macular dystrophy

description: Introduction: Ectodermal dysplasias (ED) encompass a broad group of hereditary disorders, within which both the structure and functionality of various ectoderm-derived tissues can be affected depending on the involved gene. Congenital hypotrichosis with juvenile macular dystrophy is one of the entities included in ED, which is associated with an alteration in the CDH3 gene encoding P-Cadherin. Case presentation: We describe a 6-year-old patient with history of atopic dermatitis, amblyopia and reduced vision acuity. Physical examination revealed hypotrichosis on the scalp with alopecia patches, microretrognathia, dental enamel abnormalities, dry skin, keratosis pilaris. Molecular analysis identified a homozygous variant in the CDH3 gene (NM_001793.6) c.1508G&gt;A p.Arg503His. Conclusion: we present de first Colombian case of clinical and molecular diagnosis of Hypotrichosis with Juvenile Macular Dystrophy associated with CDH3.
DOI: 10.6084/m9.figshare.28674506.v1
title: Supplementary Material for: The first Colombian patient with CDH3-related hypotrichosis with juvenile macular dystrophy

description: Introduction: Ectodermal dysplasias (ED) encompass a broad group of hereditary disorders, within which both the structure and functionality of various ectoderm-derived tissues can be affected depending on the involved gene. Congenital hypotrichosis with juvenile macular dystrophy is one of the entities included in ED, which is associated with an alteration in the CDH3 gene encoding P-Cadherin. Case presentation: We describe a 6-year-old patient with history of atopic dermatitis, amblyopia and reduced vision acuity. Physical examination revealed hypotrichosis on the scalp with alopecia patches, microretrognathia, dental enamel abnormalities, dry skin, keratosis pilaris. Molecular analysis identified a homozygous variant in the CDH3 gene (NM_001793.6) c.1508G&gt;A p.Arg503His. Conclusion: we present de first Colombian case of clinical and molecular diagnosis of Hypotrichosis with Juvenile Macular Dystrophy associated with CDH3.
DOI: 10.6084/m9.figshare.28674509
title: Supplementary Material for: Healing Diabetic Foot Ulcers with Topical Timolol Improves Healed Epithelial Integrity

description: Abstract
Introduction: Diabetic foot ulcers are a common complication in diabetes, leading to high amputation risk and significant healthcare costs. Given topical timolol's emergence as a potential wound-healing agent, our study explored its impact on epidermal integrity. 
Methods: This study was a post-hoc analysis conducted as part of a randomized controlled trial at the Veterans Affairs Northern California Health Care System. Twenty patients who had diabetic foot ulcers healed in the original trial, 10 in the timolol arm and 10 in the placebo arm, were enrolled in the study. The primary outcome was transepidermal water loss, measured monthly for three months post-healing using a closed-chamber device. The secondary outcome was re-ulceration rates over one year.
Results: Transepidermal water loss at 1-, 2- and 3-months post-healing was significantly lower in the timolol group than in the placebo group (p&lt;0.01). Linear mixed models identified contralateral foot transepidermal water loss as a significant predictor of healed diabetic foot ulcer site transepidermal water loss (Estimate = 0.76, p&lt;0.001). The interaction between timolol treatment and months since healing significantly reduced transepidermal water loss over time (Estimate = -2.2, p=0.002). The use of a wheelchair was also associated with a significant decrease in transepidermal water loss (Estimate = -7.7, p=0.01). Initial transepidermal water loss values were higher in patients who re-ulcerated, but the difference was not statistically significant (p=0.42). There was no difference in re-ulceration rates in this small pilot study.
Conclusion: Topical timolol significantly improved skin barrier function in healed diabetic foot ulcers, reducing transepidermal water loss. Although re-ulceration rates were not significantly different, the trend suggests potential benefits. Further studies with larger sample sizes and longer follow-up are needed to confirm these findings and explore transepidermal water loss’s predictive value for re-ulceration.
DOI: 10.6084/m9.figshare.28674509.v1
title: Supplementary Material for: Healing Diabetic Foot Ulcers with Topical Timolol Improves Healed Epithelial Integrity

description: Abstract
Introduction: Diabetic foot ulcers are a common complication in diabetes, leading to high amputation risk and significant healthcare costs. Given topical timolol's emergence as a potential wound-healing agent, our study explored its impact on epidermal integrity. 
Methods: This study was a post-hoc analysis conducted as part of a randomized controlled trial at the Veterans Affairs Northern California Health Care System. Twenty patients who had diabetic foot ulcers healed in the original trial, 10 in the timolol arm and 10 in the placebo arm, were enrolled in the study. The primary outcome was transepidermal water loss, measured monthly for three months post-healing using a closed-chamber device. The secondary outcome was re-ulceration rates over one year.
Results: Transepidermal water loss at 1-, 2- and 3-months post-healing was significantly lower in the timolol group than in the placebo group (p&lt;0.01). Linear mixed models identified contralateral foot transepidermal water loss as a significant predictor of healed diabetic foot ulcer site transepidermal water loss (Estimate = 0.76, p&lt;0.001). The interaction between timolol treatment and months since healing significantly reduced transepidermal water loss over time (Estimate = -2.2, p=0.002). The use of a wheelchair was also associated with a significant decrease in transepidermal water loss (Estimate = -7.7, p=0.01). Initial transepidermal water loss values were higher in patients who re-ulcerated, but the difference was not statistically significant (p=0.42). There was no difference in re-ulceration rates in this small pilot study.
Conclusion: Topical timolol significantly improved skin barrier function in healed diabetic foot ulcers, reducing transepidermal water loss. Although re-ulceration rates were not significantly different, the trend suggests potential benefits. Further studies with larger sample sizes and longer follow-up are needed to confirm these findings and explore transepidermal water loss’s predictive value for re-ulceration.
DOI: 10.15468/dl.fk5kaf
title: Occurrence Download

description: A dataset containing 4814 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendropsophus minutus (Peters, 1872)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4814 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003171-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vgf7x2
title: Occurrence Download

description: A dataset containing 745 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Nipponia nippon (Temminck, 1835)"
 ]
}

 The dataset includes 745 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003172-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.krgq9t
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendropsophus oliveirai (Bokermann, 1963)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 79 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003173-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ahbvvv
title: Occurrence Download

description: A dataset listing the 3867 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Exploration of soil bacterial diversity in organic and conventional agriculture fields in Sri Lanka"
 ]
}

 The dataset's 3867 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003169-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t36b3v
title: Occurrence Download

description: A dataset containing 1951 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendropsophus parviceps (Boulenger, 1882)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1951 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003174-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qs2cb7
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendropsophus pauiniensis (Heyer, 1977)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 35 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003175-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w5reb3
title: Occurrence Download

description: A dataset containing 1600 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendropsophus rhodopeplus (Günther, 1858)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1600 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003176-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gpvuv8
title: Occurrence Download

description: A dataset containing 1966 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
}

 The dataset includes 1966 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003177-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4gz2k
title: Occurrence Download

description: A dataset containing 134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendropsophus schubarti (Bokermann, 1963)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 134 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003178-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15087083
title: Database of cytochrome oxidase I (COI) sequences with focus on Actinopterygii identification

description: These files (sequences and taxonomy) were derived from the BOLD (https://boldsystems.org/) and NCBI-GenBank (https://www.ncbi.nlm.nih.gov/genbank/) databases.

Actinopterygii sequences were manually curated (filtered) to remove those with an incorrect annotation. The database contains Metazoa sequences from BOLD public release, which were not filtered or revised, but are included because it is a good idea to be able to identify non-target species in metabarcoding data.
DOI: 10.15468/dl.unfpmd
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendropsophus timbeba (Martins & Cardoso, 1987)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 35 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003179-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mtvmm7
title: Occurrence Download

description: A dataset containing 1060 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dermophis mexicanus (Duméril & Bibron, 1841)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1060 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003180-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2rtp5h
title: Occurrence Download

description: A dataset containing 745 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Nipponia nippon (Temminck, 1835)"
 ]
}

 The dataset includes 745 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003181-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26180/27289017
title: mirrorCheck results for 4 public datasets

description: Each zipped folder contains results files from reanalysis of public data in our publication, "mirrorCheck: an R package facilitating informed use of DESeq2’s lfcShrink() function for differential gene expression analysis of clinical samples" (see also the Collection description).These files were produced by rendering the Quarto documents provided in the supplementary data with the publication (one per dataset). The Quarto codes for the 3 main analyses (COVID, BRCA and Cell line datasets) performed differential gene expression (DGE) analysis using both DESeq2 with lfcShrink() via our R package mirrorCheck, and also edgeR. Each zipped folder here contains 2 folders, one for each DGE analysis. Since DESeq2 was run on data without prior data cleaning, with prefiltering or after Surrogate Variable Analysis, the 'mirrorCheck output' folders themselves contain 3 sub-folders titled 'DESeq_noclean', 'DESeq_prefilt' and 'DESeq_sva". The COVID dataset also has a folder with results from Gene Set Enrichment Analysis. Finally, the fourth folder contains results from a tutorial/vignette-style supplementary file using the Bioconductor "parathyroidSE" dataset. This analysis only utilised DESeq2, with both data cleaning methods and testing two different design formulae, resulting in 5 sub-folders in the zipped folder.