cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/5qwhvr
title: Using mating-type loci to improve taxonomy of the Tuber indicum complex, and discovery of a new species, T. longispinosum

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kinoshita, Akihiko, Nara, Kazuhide, Sasaki, Hiromi, Feng, Bang, Obase, Keisuke, Yang, Zhu L., Yamanaka, Takashi (2018): Using mating-type loci to improve taxonomy of the Tuber indicum complex, and discovery of a new species, T. longispinosum. PLoS ONE (e 0193745) 13 (3): 1-21, DOI: 10.1371/journal.pone.0193745, URL: http://dx.doi.org/10.1371/journal.pone.0193745AbstractBlack truffles that morphologically resemble Tuber indicum have been known to occur in Japan since 1979. Our previous studies showed that there are two phylotypes of these truffles, both of which fell into the T. indicum complex (hereinafter “ Tuber sp. 6 ” and “ Tuber sp. 7”). However, their taxonomic treatment is still unclear. In this study, we conducted morphological and phylogenetic analyses for a total of 52 specimens from Japan (16 Tuber sp. 6 and 13 Tuber sp. 7), China (10 T. himalayense and 8 T. indicum), and Taiwan (5 T. formosanum). We compared ascospore ornamentation, size, distribution of asci with average number of spores per ascus, spine size and shape of the Japanese specimens with their allied taxa. For phylogenetic analysis, we sequenced two mating loci (MAT1-1-1 and MAT1- 2-1) and three commonly used loci (ITS, β- tubulin, and TEF 1-α). Three distinct lineages were recognized by phylogenetic analyses based on the sequences of the two matingrelated loci and three independent loci. The Tuber sp. 6 sequences clustered with those of T. himalayense and T. formosanum, and there was no clear difference in morphology among them. Tuber sp. 7 formed a distinct lineage in each phylogram. The specimens tended to have five-spored asci more frequently than other allied species and could be characterized as having ascospore ornamentation with longer spines and narrower spine bases. We therefore described Tuber sp. 7 as a new species (T. longispinosum), and treat Tuber sp. 6 and T. formosanum as synonyms of T. himalayense.
DOI: 10.15468/e6q32u
title: Heissophila macrotheleae Schuh, 2006, the first record of the subfamily Heissophilinae from China (Hemiptera: Heteroptera: Plokiophilidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Yin, Jia-Dong, Bu, Wen-Jun, Xie, Qiang (2023): Heissophila macrotheleae Schuh, 2006, the first record of the subfamily Heissophilinae from China (Hemiptera: Heteroptera: Plokiophilidae). Zootaxa 5382 (1): 55-61, DOI: 10.11646/zootaxa.5382.1.8, URL: https://www.mapress.com/zt/article/download/zootaxa.5382.1.8/52424AbstractHeissophila Schuh, 2006, a monotypic genus of Heissophilinae (Hemiptera: Plokiophilidae), is newly recorded from Oriental China based on Heissophila macrotheleae Schuh, 2006 collected from Yunnan Province, China. The diagnosis of the species is expanded based on the newly collected materials. In addition, a DNA barcode of H. macrotheleae and host spider are provided. Photographs of the co-existing web-loving bugs and the natural habitat are also present.
DOI: 10.15468/zhh329
title: Macroscepis sinalobolana (Apocynaceae, Asclepiadoideae, Gonolobeae) a new and endemic species to Sinaloa, México

description: This dataset contains the digitized treatments in Plazi based on the original journal article Alvarado-Cárdenas, Leonardo O., Pío-León, Juan F., Chávez-Hernández, María G. (2022): Macroscepis sinalobolana (Apocynaceae, Asclepiadoideae, Gonolobeae) a new and endemic species to Sinaloa, México. Phytotaxa 564 (1): 104-112, DOI: 10.11646/phytotaxa.564.1.8AbstractA new species of Macroscepis from Sinaloa, Mexico is described here. Macroscepis sinalobolana is morphologically similar to M. diademata and M. stevensii but differs in its corolla, gynostegial corona, and fruit morphology, as well as its distribution. Descriptions, illustrations, morphological comparisons, and geographic distribution maps of these species, together with its conservation status, are provided. This discovery is important because the diversity of the genus increases to five species in México, with three of them endemic to the country.
DOI: 10.15468/bmy97u
title: Aegokeras gazipashensis (Apiaceae), a new species from South Anatolia, Turkey

description: This dataset contains the digitized treatments in Plazi based on the original journal article Duran, Ahmet, Samigullin, Tahir, Lyskov, Dmitry (2023): Aegokeras gazipashensis (Apiaceae), a new species from South Anatolia, Turkey. Phytotaxa 613 (3): 234-248, DOI: 10.11646/phytotaxa.613.3.3, URL: https://phytotaxa.mapress.com/pt/article/download/phytotaxa.613.3.3/51093AbstractA new species, Aegokeras gazipashensis (Apiaceae), is described from South Anatolia, Turkey. It grows in mountain steppe formation of the Taurus Mountains in the district of Gazipaşa (Antalya province). The taxonomic affinities of the new species were determined by analyzing morphological data and a molecular phylogenetic study of nrITS. Aegokeras gazipashensis is morphologically similar to A. caespitosa but it differs mainly with growing habitat, non-caespitose habit, remains of old leaf bases, morphology of roots, leaves, and leaflets, presence of petiole, and stylopodium rim features. The anatomical structure of the fruit is given. The diagnostic morphological characters of A. gazipashensis are discussed. In addition, the geographical distribution of the new species and the morphologically related A. caespitosa species is mapped. In this study, an identification key with a description of the new species is provided along with statements about the habitat, ecology, phenology, and conservation status of the new species.
DOI: 10.15468/spsfgt
title: Andrena nahua, a new bee species from central Mexico (Hymenoptera: Andrenidae: Andreninae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Neff, John L. (2024): Andrena nahua, a new bee species from central Mexico (Hymenoptera: Andrenidae: Andreninae). Journal of Melittology 2024 (116): 1-7, DOI: 10.17161/jom.i116.13718, URL: http://dx.doi.org/10.17161/jom.i116.13718Abstract. Andrena nahua Neff, new species, is described from three males from central Mexico. It can be distinguished from other Mexican Andrena species by the combination of head significantly broader than long and broader than the mesosoma, broad gena, absence of facial maculation, 1st recurrent vein nearly interstitial with 2ND transverse cubital vein, black color and weak tergal fascia. As its placement in recent Andrena phylogenies indicate it does not fit in any extent Andrena subgenus, Labergeia new subgenus, is also proposed.
DOI: 10.15468/8ut5f2
title: Reevaluation of taxonomic identity of the recently introduced invasive planthopper, Pochazia shantungensis (Chou & Lu, 1977) (Hemiptera: Fulgoroidea: Ricaniidae) in Japan

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kobayashi, Shigeki, Suzuki, Masahiro, Kuwahara, Ryosuke, Park, Jaekook, Yamada, Kazutaka, Jung, Sunghoon (2024): Reevaluation of taxonomic identity of the recently introduced invasive planthopper, Pochazia shantungensis (Chou & Lu, 1977) (Hemiptera: Fulgoroidea: Ricaniidae) in Japan. Zootaxa 5446 (2): 151-178, DOI: 10.11646/zootaxa.5446.2.1, URL: http://dx.doi.org/10.11646/zootaxa.5446.2.1AbstractThe taxonomic identity of the invasive Asian Ricaniid planthopper, Pochazia shantungensis (Chou & Lu, 1977) in Japan is reevaluated. This originally Chinese planthopper is highly polyphagous and has recently become an important pest in Korea. In 2015, this species was first documented from Sakai, Osaka Prefecture and has been widespread since then. The genital structures, wings and fifth instar nymph are described and illustrated. The host plants in Japan are also documented with photographs. The male genitalia of a similar species, P. sublimata (Jacobi, 1916), are illustrated as well. As a recently introduced pest in Japan, P. shantungensis needs to be monitored for its potential spread and for the damage it may cause to agriculture.
DOI: 10.34740/kaggle/dsv/14286954
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.zp2fue
title: Occurrence Download

description: A dataset containing 630 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xipholena lamellipennis",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 630 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065120-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/6e6fsf
title: Two new species of Pseudapis Kirby, 1900 (Hymenoptera: Halictidae: Nomiinae) from Oman

description: This dataset contains the digitized treatments in Plazi based on the original journal article Pauly, Alain, Monks, Joseph, Polaszek, Andrew (2023): Two new species of Pseudapis Kirby, 1900 (Hymenoptera: Halictidae: Nomiinae) from Oman. Zootaxa 5263 (1): 107-121, DOI: 10.11646/zootaxa.5263.1.6, URL: http://dx.doi.org/10.1094/PDIS-04-22-0755-PDNAbstractTwo new species are described in the genus Pseudapis: P. kuhlmanni Pauly & Monks, and P. lisetae Pauly & Monks, both from Oman. Their distributional and flower-visiting data are presented, and they are diagnosed and differentiated from other species in the genus.
DOI: 10.15468/uh3n23
title: Aloe immaculata and A. affinis (Asphodelaceae subfam. Alooideae), two endemics from northern and eastern South Africa, are different maculate aloe species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Smith, Gideon F., Klopper, Ronell R. (2022): Aloe immaculata and A. affinis (Asphodelaceae subfam. Alooideae), two endemics from northern and eastern South Africa, are different maculate aloe species. Phytotaxa 571 (3): 291-300, DOI: 10.11646/phytotaxa.571.3.3, URL: http://dx.doi.org/10.11646/phytotaxa.571.3.3AbstractWe show that Aloe immaculata and A. affinis (Asphodelaceae subfam. Alooideae) are two different species. Aloe immaculata, a Limpopo province, South Africa, endemic, is therefore reinstated and treated as distinct from A. affinis, an endemic of the eastern, mainly Drakensberg escarpment in Mpumalanga, South Africa, and southeastern Limpopo, and northwestern Eswatini. Vegetatively, the two species mainly differ in terms of leaf colour (dull green to brownish green in the case of A. immaculata and brighter green in the case of A. affinis). Reproductively, the species differ in inflorescence structure (subcapitate to conical and round-topped racemes in the case of A. immaculata and cylindric-acuminate ones in the case of A. affinis) and flower size and colour (pale flesh pink and 28–33 mm long in A. immaculata and scarlet red and 40–45 mm long in A. affinis). The two species are compared and illustrated, and descriptions for both species and a combined distribution map are provided.
DOI: 10.5281/zenodo.17095221
title: Table 1 in A new species of Pimelodus LaCépède, 1803 (Siluriformes: Pimelodidae) from the rio São Francisco drainage, Brazil

description: Table 1. Morphometric data of Pimelodus pohli, new species (H = Holotype, MCP 38775, 1 of MCP 37339, 1 of MCP 14061, 3 of MCP 16668, 8 of MCP 37078, 4 of MCP 38776; 6 of MZUSP 39320, 3 of MCP 16661, 3 of MCP 16671, 2 of MZUSP 24704, 1 of MZUSP 28782), SD = standard deviation. Range includes the holotype.
RangeCharactersHnLowHighMeanSDStandard length (mm)147.73365.5150.3Percents of standard lengthPredorsal length39.33337.643.740.41.82Preanal length77.33374.277.976.11.00Head length25.93325.331.627.81.66Caudal peduncle length13.73313.615.714.60.67Caudal peduncle depth9.8338.210.09.10.46Adipose-fin length24.83321.826.224.01.17Adipose-fin height5.8335.28.36.60.73Preadipose length16.23312.118.314.51.96Anal-fin base12.33310.813.411.90.66Anal-fin length14.33212.916.614.90.94Pelvic-fin length17.13315.718.617.10.69Dorsal-fin length22.62820.626.123.81.28Urogenital-anal fin distance16.33312.218.214.21.39Dorsal-spine length21.82916.825.121.91.53Pectoral-spine length17.33017.022.019.11.14Body depth28.93321.231.025.62.10Body width17.93316.219.117.90.78Postcleithral process length12.03311.513.912.60.67Percents of head lengthHead depth77.53361.579.069.84.08Interorbital width30.43321.930.425.72.51Snout length46.93340.547.844.01.56Internarial length13.43311.613.812.70.51Anterior internarial width12.03310.112.811.50.72Posterior internarial width18.13315.919.717.10.83Horizontal eye diameter27.03326.532.229.11.63Mouth width29.33327.236.030.21.80Supraoccipital width25.73321.629.125.41.48Supraoccipital length40.13331.240.235.82.08
description: Published as part of Ribeiro, Frank Raynner V. & de Lucena, Carlos Alberto S., 2006, A new species of Pimelodus LaCépède, 1803 (Siluriformes: Pimelodidae) from the rio São Francisco drainage, Brazil, pp. 415 in Neotropical Ichthyology 4 (4) on page 415, DOI: 10.1590/S1679-62252006000400004, http://zenodo.org/record/5418776
DOI: 10.5281/zenodo.17095222
title: Table 1 in A new species of Pimelodus LaCépède, 1803 (Siluriformes: Pimelodidae) from the rio São Francisco drainage, Brazil

description: Table 1. Morphometric data of Pimelodus pohli, new species (H = Holotype, MCP 38775, 1 of MCP 37339, 1 of MCP 14061, 3 of MCP 16668, 8 of MCP 37078, 4 of MCP 38776; 6 of MZUSP 39320, 3 of MCP 16661, 3 of MCP 16671, 2 of MZUSP 24704, 1 of MZUSP 28782), SD = standard deviation. Range includes the holotype.
RangeCharactersHnLowHighMeanSDStandard length (mm)147.73365.5150.3Percents of standard lengthPredorsal length39.33337.643.740.41.82Preanal length77.33374.277.976.11.00Head length25.93325.331.627.81.66Caudal peduncle length13.73313.615.714.60.67Caudal peduncle depth9.8338.210.09.10.46Adipose-fin length24.83321.826.224.01.17Adipose-fin height5.8335.28.36.60.73Preadipose length16.23312.118.314.51.96Anal-fin base12.33310.813.411.90.66Anal-fin length14.33212.916.614.90.94Pelvic-fin length17.13315.718.617.10.69Dorsal-fin length22.62820.626.123.81.28Urogenital-anal fin distance16.33312.218.214.21.39Dorsal-spine length21.82916.825.121.91.53Pectoral-spine length17.33017.022.019.11.14Body depth28.93321.231.025.62.10Body width17.93316.219.117.90.78Postcleithral process length12.03311.513.912.60.67Percents of head lengthHead depth77.53361.579.069.84.08Interorbital width30.43321.930.425.72.51Snout length46.93340.547.844.01.56Internarial length13.43311.613.812.70.51Anterior internarial width12.03310.112.811.50.72Posterior internarial width18.13315.919.717.10.83Horizontal eye diameter27.03326.532.229.11.63Mouth width29.33327.236.030.21.80Supraoccipital width25.73321.629.125.41.48Supraoccipital length40.13331.240.235.82.08
description: Published as part of Ribeiro, Frank Raynner V. & de Lucena, Carlos Alberto S., 2006, A new species of Pimelodus LaCépède, 1803 (Siluriformes: Pimelodidae) from the rio São Francisco drainage, Brazil, pp. 415 in Neotropical Ichthyology 4 (4) on page 415, DOI: 10.1590/S1679-62252006000400004, http://zenodo.org/record/5418776
DOI: 10.15468/92tqy8
title: Obliquicauda longipens sp. nov. and Obliquicauda xianninga sp. nov.: two new species of foliicolous algae from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Li, Shu-Yin, Xu, Yuan-Zhao, Guo, Wen-Si, Zhu, Huan, Liu, Guo-Xiang (2023): Obliquicauda longipens sp. nov. and Obliquicauda xianninga sp. nov.: two new species of foliicolous algae from China. Phytotaxa 626 (3): 181-190, DOI: 10.11646/phytotaxa.626.3.4, URL: https://phytotaxa.mapress.com/pt/article/download/phytotaxa.626.3.4/51309AbstractObliquicauda belongs to the Choricystis /Botryococcus clade (Trebouxiophyceae, Chlorophyta). The establishment of this genus was predicated on phylogenetic analyses and the distinctive morphology characteristics, slightly asymmetrical and fusiform vegetative cells with a tail-like stalk tilting to one side. Two different pure cultured Obliquicauda- like strains obtained from a living Ficus pumila L. leaf were deeply investigated in this study. Based on the significant morphological differences (cell length, width, L: W ratio, and stalk length), the results of phylogenetic analyses relying on 18 S and rbc L markers, and the genetic distances of the 18 S and rbc L genes, these two strains were conclusively identified as novel additions to Obliquicauda, O. longipens sp. nov., and O. xianninga sp. nov.
DOI: 10.15468/bzud7s
title: Enigmatic male dimorphism in the Phlaeothripinae (Thysanoptera, Phlaeothripidae), with description of a new genus and species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Okajima, Shuji, Masumoto, Masami (2022): Enigmatic male dimorphism in the Phlaeothripinae (Thysanoptera, Phlaeothripidae), with description of a new genus and species. Zootaxa 5134 (4): 561-568, DOI: 10.11646/zootaxa.5134.4.4AbstractNazonothrips toshifumii gen. et sp. n. is described from unidentified fungus in Taiwan. This fungus-feeding species probably belongs to the tribe Plectrothripini of the subfamily Phlaeothripinae. The males of the new species exhibit a strange allometric growth that appears to involve two patterns of variation, but it is not possible to be certain due to the small number of available specimens.
DOI: 10.15468/4jjj3q
title: A new bee fly species of the genus Phthiria (Diptera, Bombyliidae, Phthiriinae, Phthiriini) from the west of Iran

description: This dataset contains the digitized treatments in Plazi based on the original journal article Farhangi, Seyed Vahid, Nozari, Jamasb, Gharali, Babak (2023): A new bee fly species of the genus Phthiria (Diptera, Bombyliidae, Phthiriinae, Phthiriini) from the west of Iran. Zootaxa 5380 (5): 491-497, DOI: 10.11646/zootaxa.5380.5.6, URL: https://www.mapress.com/zt/article/download/zootaxa.5380.5.6/52403AbstractPhthiria portokali sp. nov. is described and illustrated from the west of Iran based on specimens collected by white pan traps. The new species is unique in having a large tortoise-shell-shaped orange pattern on the dorsum of the mesonotum of the female specimens. This character has not been seen among the other species described from the Palaearctic Region.
DOI: 10.15468/5ujvus
title: Discovery of a new species of Euphlyctis (Anura: Dicroglossidae) from the western coastal plains of peninsular India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Dinesh, K. P., Channakeshavamurthy, B. H., Deepak, P., Shabnam, A., Ghosh, Avrajjal, Deuti, Kaushik (2022): Discovery of a new species of Euphlyctis (Anura: Dicroglossidae) from the western coastal plains of peninsular India. Zootaxa 5100 (3): 419-434, DOI: 10.11646/zootaxa.5100.3.6AbstractThe aquatic frog genus ‘ Euphlyctis ’ is now considered under two separate genera- Euphlyctis Fitzinger and Phrynoderma Fitzinger, with four valid species in each genus, respectively. The current distribution range of the genus Phrynoderma is restricted to peninsular India and Bangladesh, with a probability of availability in Sri Lanka. The genus Euphlyctis has a wide range of distribution from the Arabian Peninsula and the South Asian countries, with a few historical descriptions treated as junior synonyms of the species Euphlyctis cyanophlyctis in India. A new species of skittering frog, Euphlyctis jaladhara sp. nov. is described here from the surroundings of the Thattekad Bird Sanctuary of Kerala, India, which has a predominant distribution in the western coastal plains of peninsular India and some parts of the Western Ghats. The new species has distinct morphological characters and a high genetic distance that distinguishes it from the sympatric species. Discussions are made concerning the validity of the species E. ghoshi and E. kalasgramensis.
DOI: 10.15468/vpmymk
title: Flavonoid pattern inheritance in the allopolyploid Spartina anglica - Comparison with the parental species S. maritima and S. alterniflora

description: This dataset contains the digitized treatments in Plazi based on the original journal article Grignon-Dubois, Micheline, Montaudouin, Xavier De, Rezzonico, Bernadette (2020): Flavonoid pattern inheritance in the allopolyploid Spartina anglica - Comparison with the parental species S. maritima and S. alterniflora. Phytochemistry (112312) 174: 1-13, DOI: 10.1016/j.phytochem.2020.112312, URL: http://dx.doi.org/10.1016/j.phytochem.2020.112312
DOI: 10.17632/trfngprnv4
title: PDS5 proteins control genome architecture by limiting the lifetime of cohesin-NIPBL complexes

description: Cohesin-NIPBL complexes extrude genomic DNA into loops that are constrained by CTCF boundaries. This process has important regulatory functions and weakens the separation between euchromatic and heterochromatic compartments. Cohesin can also bind PDS5A or PDS5B, which do not support loop extrusion but are required for the formation of CTCF boundaries. How PDS5 proteins perform this function is unknown. Here we show by in vitro single-molecule imaging that PDS5 proteins stop loop extrusion by facilitating the dissociation of NIPBL from cohesin. Hi-C experiments suggest that this function is required for the establishment of CTCF boundaries in cells. In silico modelling indicates that PDS5 proteins enable the separation between compartments by limiting cohesin’s velocity and chromatin-residence time. The degree of this compartmentalization depends on the frequency with which chromatin is extruded relative to the time it takes for compartments to form. These results identify PDS5 proteins as key regulators of genome organization.
DOI: 10.17632/trfngprnv4.1
title: PDS5 proteins control genome architecture by limiting the lifetime of cohesin-NIPBL complexes

description: Cohesin-NIPBL complexes extrude genomic DNA into loops that are constrained by CTCF boundaries. This process has important regulatory functions and weakens the separation between euchromatic and heterochromatic compartments. Cohesin can also bind PDS5A or PDS5B, which do not support loop extrusion but are required for the formation of CTCF boundaries. How PDS5 proteins perform this function is unknown. Here we show by in vitro single-molecule imaging that PDS5 proteins stop loop extrusion by facilitating the dissociation of NIPBL from cohesin. Hi-C experiments suggest that this function is required for the establishment of CTCF boundaries in cells. In silico modelling indicates that PDS5 proteins enable the separation between compartments by limiting cohesin’s velocity and chromatin-residence time. The degree of this compartmentalization depends on the frequency with which chromatin is extruded relative to the time it takes for compartments to form. These results identify PDS5 proteins as key regulators of genome organization.