cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.ccyv41y
title: CCDC 889050: Experimental Crystal Structure Determination

description: Related Article: Verena Goertz, Dieter Schollmeyer, Helmut Ritter|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.247203
title: Popc Monolayer Simulations With Charmm36+Opc @ 310 K

description: POPC monolayers simulated at a varying area per lipid in the NVT ensemble. The Charmm36 lipid model [1] is employed together with the 4-point OPC water model [2].

Each system contains two monolayers with 64 lipids each. These monolayers are separated by a water slab, and surrounded by vacuum. 

The number in the filename corresponds to the area per lipid in Ångströms. The starting structures were taken from [3], which also provides detailed information on system setup. The simulations in [3] used TIP3P water and Slipids lipids, which were replaced by OPC water and Charmm36 lipids, followed by energy minimization and production runs.

All trajectories, 100 ns long, are simulated with Gromacs 5.0.x [4] using the parameters given in the mdp file. The topologies for the lipids can be obtained from Charmm-GUI and for the OPC water model from https://bioinformatics.cs.vt.edu/~izadi/ .

[1] DOI: 10.1021/jp101759q<br>
[2] DOI: 10.1021/jz501780a<br>
[3] DOI: 10.1016/j.bbamem.2016.09.015<br>
[4] DOI: 10.1016/j.softx.2015.06.001
DOI: 10.5281/zenodo.247204
title: Popc Monolayer Simulations With Charmm36+Tip(S)3P @ 310 K

description: POPC monolayers simulated at a varying area per lipid in the NVT ensemble. The Charmm36 lipid model [1] is employed together with the Charmm-specific TIP3P (TIPS3P) water model.

Each system contains two monolayers with 64 lipids each. These monolayers are separated by a water slab, and surrounded by vacuum. 

The number in the filename corresponds to the area per lipid in Ångströms. The starting structures were taken from [2], which also provides detailed information on system setup. The simulations in [2] used TIP3P water and Slipids lipids, which were replaced by TIPS3P water and Charmm36 lipids, followed by energy minimization and production runs.

All trajectories, 100 ns long, are simulated with Gromacs 5.0.x [3] using the parameters given in the mdp file. The topologies for the lipids can be obtained from Charmm-GUI.

[1] DOI: 10.1021/jp101759q<br>
[2] DOI: 10.1016/j.bbamem.2016.09.015<br>
[3] DOI: 10.1016/j.softx.2015.06.001
DOI: 10.15468/mrt5ho
title: Phylogenetic relationships and a new classification of the family Cyclopteridae (Perciformes: Cottoidei)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Oku, Kanami, Imamura, Hisashi, Yabe, Mamoru (2017): Phylogenetic relationships and a new classification of the family Cyclopteridae (Perciformes: Cottoidei). Zootaxa 4221 (1): 1-59, DOI: 10.5281/zenodo.246721
DOI: 10.17632/nwrwz7mn7h.1
title: JDiffraction: a GPGPU-accelerated JAVA library for numerical propagation of scalar wave fields

description: JDiffraction, a GPGPU-accelerated JAVA library for numerical propagation of scalar wave fields, is presented. Angular spectrum, Fresnel transform, and Fresnel–Bluestein transform are the numerical algorithms implemented in the methods and functions of the library to compute the scalar propagation of the complex wavefield. The functionality of the library is tested with the modeling of easy to forecast numerical experiments and also with the numerical reconstruction of a digitally recorded hologram. The performance of JDiffraction is contrasted with a library written for C++, showing great competitiveness in the apparently less complex environment of JAVA language. JDiffraction also includes JAVA easy-to-use methods and functions that take advantage of the computation power of the graphic processing units to accelerate the processing times of 2048 x 2048 pixel images up to 74 frames per second.
DOI: 10.15468/ymrcqs
title: Brentidae of Peru (Coleoptera: Curculionoidea)

description: This dataset contains the digitized treatments in Plazi based on the original journal volume Mantilleri, Antoine, Bartolozzi, Luca, Sforzi, Alessandra (2017): Brentidae of Peru (Coleoptera: Curculionoidea). Zootaxa 4221 (1), DOI: 10.5281/zenodo.246755
DOI: 10.5517/ccdc.csd.cc1n8g9p
title: CCDC 1527472: Experimental Crystal Structure Determination

description: Related Article: Frank R. Fronczek|2017|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/4tkppv
title: A new species of poison-dart frog (Anura: Dendrobatidae) from Manu province, Amazon region of southeastern Peru, with notes on its natural history, bioacoustics, phylogenetics, and recommended conservation status

description: This dataset contains the digitized treatments in Plazi based on the original journal article Serrano-Rojas, Shirley J., Whitworth, Andrew, Villacampa, Jaime, May, Rudolf Von, Gutiérrez, Roberto C., Padial, José M., Chaparro, Juan C. (2017): A new species of poison-dart frog (Anura: Dendrobatidae) from Manu province, Amazon region of southeastern Peru, with notes on its natural history, bioacoustics, phylogenetics, and recommended conservation status. Zootaxa 4221 (1): 71-94, DOI: 10.5281/zenodo.246758
DOI: 10.15468/xctxrb
title: On the Scaphisomatini (Coleoptera, Staphylinidae, Scaphidiinae) of the Philippines, IV: the genera Sapitia ACHARD and Scaphisoma LEACH

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ivan Löbl, Ryo Ogawa (2016): On the Scaphisomatini (Coleoptera, Staphylinidae, Scaphidiinae) of the Philippines, IV: the genera Sapitia ACHARD and Scaphisoma LEACH. Linzer biol. Beitr. 48 (2): 1339-1492, DOI: 10.5281/zenodo.247206
DOI: 10.5258/soton/397443
title: Data for Swimming performance and behaviour of bighead carp (Hypophthalmichthys nobilis): application to fish passage and exclusion criteria

description: This is the data underlying the article 'Swimming performance and behaviour of bighead carp (Hypophthalmichthys nobilis): application to fish passage and exclusion criteria' published in Ecological Engineering, Volume 95, October 2016, Pages 690–698.
DOI: 10.15468/lzkyym
title: Taxonomy and ecology of a new species of Corynura (Hymenoptera: Halictidae: Augochlorini) from Chile and Argentina

description: This dataset contains the digitized treatments in Plazi based on the original journal article González-Vaquero, Rocío Ana, Polidori, Carlo, Nieves-Aldrey, José Luis (2017): Taxonomy and ecology of a new species of Corynura (Hymenoptera: Halictidae: Augochlorini) from Chile and Argentina. Zootaxa 4221 (1): 95-110, DOI: 10.5281/zenodo.246769
DOI: 10.15468/qbpmvh
title: A new Otiorhynchus Germar, 1822 subgenus Tecutinus Reitter, 1912 from Anatolia (Coleoptera, Curculionidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Christoph Germann (2016): A new Otiorhynchus Germar, 1822 subgenus Tecutinus Reitter, 1912 from Anatolia (Coleoptera, Curculionidae). Contributions to Natural History 33: 1-10, DOI: 10.5281/zenodo.247244
DOI: 10.14457/nsru.the.2006.34
title: รูปแบบการพัฒนาครูตามมาตรฐานการประกันคุณภาพการศึกษาในโรงเรียนขนาดเล็ก สำนักงานเขตพื้นที่การศึกษานครสวรรค์ เขต 1
DOI: 10.14457/nsru.the.2006.46
title: การประเมินและติดตามผลนักศึกษาโปรแกรมวิชาสังคมศึกษาตามโครงการพัฒนาครูประจำการให้ได้รับวุฒิปริญญาตรีทางการศึกษาของมหาวิทยาลัยราชภัฏนครสวรรค์
DOI: 10.15468/ieakki
title: Two new marine flatworms (Polycladida: Pseudocerotidae) from Andaman & Nicobar Islands, India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Dixit, Sudhanshu, Raghunathan, C., Chandra, Kailash (2017): Two new marine flatworms (Polycladida: Pseudocerotidae) from Andaman & Nicobar Islands, India. Zootaxa 4221 (1): 111-122, DOI: 10.5281/zenodo.246774
DOI: 10.15468/fwjeq4
title: Lluciapomaresius nisae, a new species of Ephippigerini (Orthoptera: Tettigoniidae: Bradyporinae) from the northeast of the Iberian Peninsula

description: This dataset contains the digitized treatments in Plazi based on the original journal article Olmo-Vidal, Josep Maria (2017): Lluciapomaresius nisae, a new species of Ephippigerini (Orthoptera: Tettigoniidae: Bradyporinae) from the northeast of the Iberian Peninsula. Zootaxa 4221 (1): 123-130, DOI: 10.5281/zenodo.246782
DOI: 10.5281/zenodo.247243
title: Data And Analysis Scripts For Zizka Et Al., Finding Needles In The Haystack: Where To Look For Rare Species In The American Tropics

description: The analysis scripts and data from: Zizka A, ter Steege H, Pessoa MDC, Antonelli A (2017)  Finding needles in the haystack: Where to look for rare species in the American tropics. Ecography.
description: Funding for this work was provided by the Swedish Research Council (B0569601), the European Research Council under the European Union ' s Seventh Framework Programme (FP/2007-2013, ERC Grant Agreement no. 331024), and a Wallenberg Academy Fellowship to Alexandre Antonelli.
DOI: 10.15468/oz3udv
title: Rhizopogon kretzerae sp. nov.: the rare fungal symbiont in the tripartite system with Pterospora andromedea and Pinus strobus

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lisa C. Grubisha, Nicholas J. Dowie, Steven L. Miller, Christina Hazard, Steven M. Trowbridge, Thomas R. Horton, Matthew R. Klooster (2014): Rhizopogon kretzerae sp. nov.: the rare fungal symbiont in the tripartite system with Pterospora andromedea and Pinus strobus. Botany 92: 526-534, DOI: 10.1139/cjb-2013-0309
DOI: 10.15468/pj8k3c
title: Jumping Plant Lice of the genus Calophya (Hemiptera: Calophyidae) in Mexico

description: This dataset contains the digitized treatments in Plazi based on the original journal article Paul Mendez, Daniel Burckhardt, Armando Equihua-Martínez, Jorge M. Valdez Carrasco, Edith G. Estrada-Venegas (2016): Jumping Plant Lice of the genus Calophya (Hemiptera: Calophyidae) in Mexico. Florida Entomologist 99 (3): 417-425, DOI: 10.1653/024.099.0312
DOI: 10.14457/nsru.the.2006.52
title: รูปแบบการพัฒนาการเรียนรู้สู่มาตรฐานการศึกษา โรงเรียนบ้านรางจิก สำนักงานเขตพื้นที่การศึกษาชัยนาท
DOI: 10.15468/ddo1li
title: Nebria (Patrobonebria) incognita n. sp. and Nebria (P.) hiekeiana n. sp., two new species from the Western Himalaya, with remarks on Nebria (P.) desgodinsi (Coleoptera, Carabidae, Nebriinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Charles Huber, Hannes Baur (2016): Nebria (Patrobonebria) incognita n. sp. and Nebria (P.) hiekeiana n. sp., two new species from the Western Himalaya, with remarks on Nebria (P.) desgodinsi (Coleoptera, Carabidae, Nebriinae). Entomologische Blätter und Coleoptera 112 (1): 203-214, DOI: 10.5281/zenodo.247616
DOI: 10.15468/1ta4if
title: Revision of Terellia amberboae group of species (Diptera: Tephritidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zarghani, Ebrahim, Khaghaninia, Samad, Namin, Saeed Mohamadzade, Korneyev, Valery A. (2017): Revision of Terellia amberboae group of species (Diptera: Tephritidae). Zootaxa 4221 (1): 142-150, DOI: 10.5281/zenodo.246792
DOI: 10.5255/ukda-sn-852521
title: Neurocognitive profile of sexual offenders - Experimental data
DOI: 10.5517/ccdc.csd.ccpfk4s
title: CCDC 638635: Experimental Crystal Structure Determination

description: Related Article: Paul J. Lusby, Simon P. Foxon, Paul H. Walton|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccpfk6v
title: CCDC 638637: Experimental Crystal Structure Determination

description: Related Article: Paul J. Lusby, Simon P. Foxon, Paul H. Walton|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccpfk5t
title: CCDC 638636: Experimental Crystal Structure Determination

description: Related Article: Simon P. Foxon, Paul H. Walton|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.20393/b4d681de-b490-4b2e-bc69-85d57a2982f2
title: KRY11_03 Achill & Geo11_04, Mayo Bathymetry

description: The objective for this survey leg (KRY11_03) was to acquire high resolution MBES, SBES and shallow seismic data offshore off Achill, Co.Mayo. Survey work was carried out to International Hydrographic Organisation (IHO) Order 1A standard.  The survey was carried out ESBI in partnership with SEAI supported by INFOMAR vessels and staff. This is a 5 m resolution bathymetry tif in WGS84 projection. The survey was carried out on the R.V. Keary using a hull mounted EM3002 multibeam echosounder.  Data was subsequently processed using CARIS HIPS and SIPS software. Depths in the survey area ranged from 0m to 55m, all depths are reduced to LAT (lowest Astronomical Tide) using the Vertical Offshore Reference Frame (VORF) model from the United Kingdom Hydrographic Office (UKHO).
DOI: 10.4225/25/587c1c94d6b1b
title: Casey Station Multibeam Surveys 2013-2015 (GA-4415, GA-0348 - AAD 3326) - High Resolution Bathymetry Grid

description: This is a compilation of bathymetry surveys GA-4415 and GA-0348. GA-4415 survey was conducted by the Royal Australian Navy (RAN) and the Australian Antarctic Division (AAD) onboard the RAN vessel Wyatt Earp in 2013/2014, while GA-0348 survey was a collaboration between Geoscience Australia (GA) , the Royal Australian Navy and Australian Antarctic Division acquired by the AAD workboat Howard Burton during December 2014 to February 2015. The survey goal was to acquire high resolution bathymetry data to improve our understanding of the seafloor using multibeam sonar. The bathymetry data collection will be supplemented by physical sampling of the seafloor sediments and video recordings of the biological communities living in the seafloor. The survey covers areas that are frequently used by the RSV Aurora Australis. Improving our understanding of the seabed environment in these shallow coastal waters will ultimately lead to a better environmental management of the Australian Antarctic Territory. The data will also help the RAN to develop more accurate navigation charts therefore reducing the risk to maritime operation in the region.
DOI: 10.5281/zenodo.245431
title: Filtered And Annotated Snv And Indel Variants In The Pc3 And Lncap Human Prostate Cancer Cell Lines

description: 150bp paired-end reads (insert size 350bp) were obtained using the Illumina HiSeqX sequencer. Samtools v1.3.1 mpileup and bcftools were used to interrogate indexed BAM files, from whole-genome reads aligned to human reference genome GRCh38 build 82, and generate a VCF (Variant Call Format) file of single nucleotide variants (SNVs) and short indel variants. Variants private, or unique to a particular cell line, or shared by both were next identified. Variants (likely to be common germline variants) present in HapMap, 1000 genomes phase 3 (2,504 human genomes), and the National Heart Lung and Blood Institute’s Exome Sequencing Project (ESP) (bundled variant data file available at https://goo.gl/mEogvD) were excluded. Variant files (VCF) were filtered using SnpSift  with the following parameters: 'QUAL \textgreater= 200 \&\& DP \textgreater= 30', where QUAL denotes minimum variance confidence and DP total depth threshold. Filtered variants were annotated using SnpEff v4.3g. Please see https://github.com/sciseim/PCaWGS for associated scripts.
DOI: 10.17632/mtzkz47y8r.1
title: RECOLA: REcursive Computation of One-Loop Amplitudes

description: We present the Fortran95 program Recola for the perturbative computation of next-to-leading-order transition amplitudes in the Standard Model of particle physics. The code provides numerical results in the ’t Hooft–Feynman gauge. It uses the complex-mass scheme and allows for a consistent isolation of resonant contributions. Dimensional regularization is employed for ultraviolet and infrared singularities, with the alternative possibility of treating collinear and soft singularities in mass regularization. Recola supports various renormalization schemes for the electromagnetic and a dynamical Nf-flavour scheme for the strong coupling constant. The calculation of next-to-leading-order squared amplitudes, summed over spin and colour, is supported as well as the computation of colour- and spin-correlated leading-order squared amplitudes needed in the dipole subtraction formalism.
DOI: 10.5281/zenodo.247386
title: Popc/Cholesterol (50:50) Lipid Membrane, 303K, Charmm36 Force Field, Simulation Files And 100 Ns Trajectory For Gromacs Simulation Engine V5

description: All runs were performed with GROMACS simulation engine v5 and CHARMM36 additive force field parameters obtained from MacKerell lab website (http://mackerell.umaryland.edu/charmm_ff.shtml, also available at

https://doi.org/10.5281/zenodo.209080). Conditions: T=303, 80 POPC and 80 Cholesterol molecules, 7200 tip3p waters, 100ns trajectory (preceded with equilibration). 

These data were originally obtained for the nmrlipids.blospot.fi project.

Find more details at nmrlipids.blospot.fi and https://github.com/NMRLipids/nmrlipids.blogspot.fi
DOI: 10.5517/ccdc.csd.ccp2mw7
title: CCDC 628149: Experimental Crystal Structure Determination

description: Related Article: Zofia Lipkowska|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccplbyj
title: CCDC 643248: Experimental Crystal Structure Determination

description: Related Article: Zofia Lipkowska|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccs05mk
title: CCDC 715158: Experimental Crystal Structure Determination

description: Related Article: Yu-Chen Sun, Hao-Tian Zhu, Ming-Da Lu, Shu-Li Zheng, Xiao-Hui Li, Lan-Cui Zhang|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccs2555
title: CCDC 717066: Experimental Crystal Structure Determination

description: Related Article: Lan-Cui Zhang, Zai-Ming Zhu|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccs2577
title: CCDC 717068: Experimental Crystal Structure Determination

description: Related Article: Lan-Cui Zhang, Zai-Ming Zhu|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccs2588
title: CCDC 717069: Experimental Crystal Structure Determination

description: Related Article: Lan-Cui Zhang, Zai-Ming Zhu|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccs2599
title: CCDC 717070: Experimental Crystal Structure Determination

description: Related Article: Lan-cui Zhang, Zai-ming Zhu|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccshzt1
title: CCDC 730354: Experimental Crystal Structure Determination

description: Related Article: Zofia Lipkowska|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cct7vxs
title: CCDC 752336: Experimental Crystal Structure Determination

description: Related Article: Lan-Cui Zhang,  Shu-Li Zheng,  Han Xue,  Zai-Ming Zhu, Wan-Sheng You,  Yang-Guang Li, Enbo Wang|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.