cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.3a829t
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hamatoscalpellum hamatum (G.O.Sars, 1879)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 18 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054083-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3rnxq
title: Occurrence Download

description: A dataset containing 29091 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Satureja L."
 ]
}

 The dataset includes 29091 records from 313 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008628-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.srzqrf
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elaeagnus wenshanensis C.Y.Chang"
 ]
}

 The dataset includes 35 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036692-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uwjsxu
title: Occurrence Download

description: A dataset containing 730 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Biscutella maestratensis Mateo & M.B.Crespo"
 ]
}

 The dataset includes 730 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054109-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2e73gt
title: Occurrence Download

description: A dataset containing 1656 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((0.64836 43.06589,12.3488 59.77609,14.98552 67.25778,-11.5135 62.47873,-11.31575 38.155,-6.96516 35.5842,1.63713 37.39694,0.64836 43.06589))",
 "TaxonKey is Pennatula phosphorea Linnaeus, 1758"
 ]
}

 The dataset includes 1656 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008629-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5f5n4n
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Todiramphus ruficollaris (Holyoak, 1974)"
 ]
}

 The dataset includes 27 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036693-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8qnv3
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Eleutherodactylus maestrensis Díaz, Cádiz & Navarro, 2005"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047246-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wqflpx
title: Occurrence Download

description: A dataset containing 5501668 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Norway",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 5501668 records from 288 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008637-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.21901401
title: Debugging Flaky Tests using Spectrum-based Fault Localization

description: This repo contains the dataset and evaluation scripts for our paper <i>Debugging Flaky Tests using Spectrum-based Fault Localization, </i>published at the ICSE'2023 DEMO track.pre-printimplementation
DOI: 10.6084/m9.figshare.21901401.v1
title: Debugging Flaky Tests using Spectrum-based Fault Localization

description: This repo contains the dataset and evaluation scripts for our paper <i>Debugging Flaky Tests using Spectrum-based Fault Localization, </i>published at the ICSE'2023 DEMO track.pre-printimplementation
DOI: 10.5281/zenodo.14834156
title: Liraglutide preserves CD34+ stem cells from dysfunction Induced by high glucose exposure

description: This record contains raw data related to the article "Liraglutide preserves CD34+ stem cells from dysfunction Induced by high glucose exposure"



Background: Glucagon like peptide-1 receptor agonists (GLP-1RAs) have shown to reduce mortality and cardiovascular events in patients with type 2 diabetes mellitus (T2DM). Since the impairment in number and function of vasculotrophic circulating CD34+ hematopoietic stem progenitor cells (HSPCs) in T2D has been reported to increase cardiovascular (CV) risk, we hypothesized that one of the mechanisms whereby GLP-1 RAs exert CV protective effects may be related to the ability to improve CD34+ HSPC function.

Methods: In cord blood (CB)-derived CD34+ HSPC, the expression of GLP-1 receptor (GLP-1R) mRNA, receptor protein and intracellular signaling was evaluated by RT-qPCR and Western Blot respectively. CD34+ HSPCs were exposed to high glucose (HG) condition and GLP-1RA liraglutide (LIRA) was added before as well as after functional impairment. Proliferation, CXCR4/SDF-1α axis activity and intracellular ROS production of CD34+ HSPC were evaluated.

Results: CD34+ HSPCs express GLP-1R at transcriptional and protein level. LIRA treatment prevented and rescued HSPC proliferation, CXCR4/SDF-1α axis activity and metabolic imbalance from HG-induced impairment. LIRA stimulation promoted intracellular cAMP accumulation as well as ERK1/2 and AKT signaling activation. The selective GLP-1R antagonist exendin (9-39) abrogated LIRA-dependent ERK1/2 and AKT phosphorylation along with the related protective effects.

Conclusion: We provided the first evidence that CD34+ HSPC express GLP-1R and that LIRA can favorably impact on cell dysfunction due to HG exposure. These findings open new perspectives on the favorable CV effects of GLP-1 RAs in T2DM patients.


Keywords: CD34+ hematopoietic stem progenitor cells; Cardiovascular disease; GLP-1 receptor agonist; Type 2 diabetes mellitus.

This dataset is not public. It’s available upon reasonable requesto to the corresponding author.
DOI: 10.5281/zenodo.14834157
title: Liraglutide preserves CD34+ stem cells from dysfunction Induced by high glucose exposure

description: This record contains raw data related to the article "Liraglutide preserves CD34+ stem cells from dysfunction Induced by high glucose exposure"



Background: Glucagon like peptide-1 receptor agonists (GLP-1RAs) have shown to reduce mortality and cardiovascular events in patients with type 2 diabetes mellitus (T2DM). Since the impairment in number and function of vasculotrophic circulating CD34+ hematopoietic stem progenitor cells (HSPCs) in T2D has been reported to increase cardiovascular (CV) risk, we hypothesized that one of the mechanisms whereby GLP-1 RAs exert CV protective effects may be related to the ability to improve CD34+ HSPC function.

Methods: In cord blood (CB)-derived CD34+ HSPC, the expression of GLP-1 receptor (GLP-1R) mRNA, receptor protein and intracellular signaling was evaluated by RT-qPCR and Western Blot respectively. CD34+ HSPCs were exposed to high glucose (HG) condition and GLP-1RA liraglutide (LIRA) was added before as well as after functional impairment. Proliferation, CXCR4/SDF-1α axis activity and intracellular ROS production of CD34+ HSPC were evaluated.

Results: CD34+ HSPCs express GLP-1R at transcriptional and protein level. LIRA treatment prevented and rescued HSPC proliferation, CXCR4/SDF-1α axis activity and metabolic imbalance from HG-induced impairment. LIRA stimulation promoted intracellular cAMP accumulation as well as ERK1/2 and AKT signaling activation. The selective GLP-1R antagonist exendin (9-39) abrogated LIRA-dependent ERK1/2 and AKT phosphorylation along with the related protective effects.

Conclusion: We provided the first evidence that CD34+ HSPC express GLP-1R and that LIRA can favorably impact on cell dysfunction due to HG exposure. These findings open new perspectives on the favorable CV effects of GLP-1 RAs in T2DM patients.


Keywords: CD34+ hematopoietic stem progenitor cells; Cardiovascular disease; GLP-1 receptor agonist; Type 2 diabetes mellitus.

This dataset is not public. It’s available upon reasonable requesto to the corresponding author.
DOI: 10.5281/zenodo.14843768
title: Global Gene Editing Market 2025 To 2034

description: Gene Editing Market Size, Trends and Insights By Product Type (CRISPR Products, Kits and Enzymes, Libraries, Design Tools, Antibodies, Others, CRISPR Services, gRNA Design and Vector Construction, Cell Line and Engineering, Screening Services, Others), By Application (Agricultural, Biomedical, Industrial, Genome Engineering, Disease Models, Functional Genomics, Others), By End User (Academic Institutes and Research Centres, Biotechnology Companies, Contract Research Organizations (CROs), Pharmaceutical and Biopharmaceutical Companies), and By Region - Global Industry Overview, Statistical Data, Competitive Analysis, Share, Outlook, and Forecast 2025 – 2034.

Reports Description

Global Gene Editing Market size was valued at USD 5.65 Billion in 2025. It is expected to reach USD 29.28 Billion in 2034, growing at a CAGR of 25.81% over the forecast period 2025 – 2034.

For more information, DOWNLOAD FREE SAMPLE Now at https://www.custommarketinsights.com/request-for-free-sample/?reportid=62142
DOI: 10.5281/zenodo.14843769
title: Global Gene Editing Market 2025 To 2034

description: Gene Editing Market Size, Trends and Insights By Product Type (CRISPR Products, Kits and Enzymes, Libraries, Design Tools, Antibodies, Others, CRISPR Services, gRNA Design and Vector Construction, Cell Line and Engineering, Screening Services, Others), By Application (Agricultural, Biomedical, Industrial, Genome Engineering, Disease Models, Functional Genomics, Others), By End User (Academic Institutes and Research Centres, Biotechnology Companies, Contract Research Organizations (CROs), Pharmaceutical and Biopharmaceutical Companies), and By Region - Global Industry Overview, Statistical Data, Competitive Analysis, Share, Outlook, and Forecast 2025 – 2034.

Reports Description

Global Gene Editing Market size was valued at USD 5.65 Billion in 2025. It is expected to reach USD 29.28 Billion in 2034, growing at a CAGR of 25.81% over the forecast period 2025 – 2034.

For more information, DOWNLOAD FREE SAMPLE Now at https://www.custommarketinsights.com/request-for-free-sample/?reportid=62142
DOI: 10.5284/1125830
title: Dataset from an Archaeological Evaluation at Rockliffe Hall, Hurworth-on-Tees, Darlington, County Durham, August 2024

description: This collection comprises data from an archaeological trial trench evaluation at Rockliffe Hall, Hurworth-on-Tees, County Durham. This work was undertaken by Ecus Ltd. in August 2024. The only surviving remains were plough furrows associated with post-medieval ridge and furrow field systems.
DOI: 10.6084/m9.figshare.28070369
title: Source dataset and code: <b>Feeding specialization shapes functional diversity of avian assemblages along a tropical rainforest elevational gradient</b>

description: Avian functional diversity in montane systems has been scrutinized by researchers seeking to uncover deterministic processes driving community assembly. However, many tropical rainforests lack fully surveyed elevational gradients that could reliably inform on functional ecology of avian assemblages. In this study, we expand global coverage of elevational trends in bird functional diversity to the third largest contiguous rainforest in the world.We conducted point-count surveys of bird communities along a 3500-m uninterrupted elevational gradient in Papua New Guinea, sampling eight distinct elevational sites. Functional diversity indices (functional richness, evenness, and divergence) were examined using Bayesian generalized additive models after standardizing for bird species richness. Additionally, we analysed phylogenetic diversity and structure, and examined community-weighted means of functional traits, including feeding guild, morphology, and dispersal ability.Standardized functional richness declined sharply from the lowlands to 1700 m a.s.l., followed by a weak decrease towards the treeline. Functional evenness decreased monotonically with elevation, while functional divergence increased at low elevations and again near the treeline. Phylogenetic diversity exhibited a monotonic decline accompanied by increased phylogenetic clustering at higher elevations.The mid-elevation collapse of functional richness and divergence was likely caused by complex multi-trophic interactions. Reduced availability of large fruits contributed to declines in frugivore body size and beak dimensions, while high abundance of invertebrates led to dominance of functionally uniform insectivores. Near the treeline, bird communities displayed morphological shifts toward terrestrial lifestyles with reduced dispersal ability, suggesting environmental filtering by forest structure.By examining trends in individual functional traits, this study highlights the role of trophic interactions in shaping avian functional diversity along an ecologically distinct rainforest system. Similar research using robust and standardized trait datasets can deepen our understanding of ecosystem functions and guide conservation strategies for different functional groups of birds across tropical regions.
DOI: 10.6084/m9.figshare.28070369.v1
title: Source dataset and code: <b>Feeding specialization shapes functional diversity of avian assemblages along a tropical rainforest elevational gradient</b>

description: Avian functional diversity in montane systems has been scrutinized by researchers seeking to uncover deterministic processes driving community assembly. However, many tropical rainforests lack fully surveyed elevational gradients that could reliably inform on functional ecology of avian assemblages. In this study, we expand global coverage of elevational trends in bird functional diversity to the third largest contiguous rainforest in the world.We conducted point-count surveys of bird communities along a 3500-m uninterrupted elevational gradient in Papua New Guinea, sampling eight distinct elevational sites. Functional diversity indices (functional richness, evenness, and divergence) were examined using Bayesian generalized additive models after standardizing for bird species richness. Additionally, we analysed phylogenetic diversity and structure, and examined community-weighted means of functional traits, including feeding guild, morphology, and dispersal ability.Standardized functional richness declined sharply from the lowlands to 1700 m a.s.l., followed by a weak decrease towards the treeline. Functional evenness decreased monotonically with elevation, while functional divergence increased at low elevations and again near the treeline. Phylogenetic diversity exhibited a monotonic decline accompanied by increased phylogenetic clustering at higher elevations.The mid-elevation collapse of functional richness and divergence was likely caused by complex multi-trophic interactions. Reduced availability of large fruits contributed to declines in frugivore body size and beak dimensions, while high abundance of invertebrates led to dominance of functionally uniform insectivores. Near the treeline, bird communities displayed morphological shifts toward terrestrial lifestyles with reduced dispersal ability, suggesting environmental filtering by forest structure.By examining trends in individual functional traits, this study highlights the role of trophic interactions in shaping avian functional diversity along an ecologically distinct rainforest system. Similar research using robust and standardized trait datasets can deepen our understanding of ecosystem functions and guide conservation strategies for different functional groups of birds across tropical regions.
DOI: 10.6084/m9.figshare.27764015
title: Estimated clinical utility of multi-gene pharmacogenetic testing in a retrospective cohort of gynecology patients

description: This study aimed to estimate the clinical utility of performing multi-gene pharmacogenetic testing on patients undergoing gynecologic surgery/procedure by evaluating the prescribing rate of Clinical Pharmacogenetics Implementation Consortium (CPIC) level A medications and frequency of drug–gene interactions (DGIs). The electronic health record was queried for 76 current procedural terminology codes to identify gynecologic surgeries/procedures that occurred between 1 January 2015 to 31 December 2020 in patients with at least one of 152 international classification of disease codes. Prescription data for CPIC level A medications was extracted. Those enrolled in the Penn Medicine Biobank were assessed for DGIs. The cohort consisted of 7798 female patients and 682 were in the biobank. Up to 6 years following their surgery or procedure, 80% were ordered ≥1 CPIC level A medication. Over half (54%) of these medications were ordered within 3 days after their surgery or procedure. The most common CPIC level A medications ordered were ibuprofen (57%) and ondansetron (42%). Overall, 7% of the cohort had ≥1 known or predicted DGI with medications they were prescribed. Multi-gene pharmacogenetic testing may be beneficial to gynecologic surgery/procedure patients by assisting clinicians with prescribing postoperative analgesics and future medications.
DOI: 10.6084/m9.figshare.27764015.v1
title: Estimated clinical utility of multi-gene pharmacogenetic testing in a retrospective cohort of gynecology patients

description: This study aimed to estimate the clinical utility of performing multi-gene pharmacogenetic testing on patients undergoing gynecologic surgery/procedure by evaluating the prescribing rate of Clinical Pharmacogenetics Implementation Consortium (CPIC) level A medications and frequency of drug–gene interactions (DGIs). The electronic health record was queried for 76 current procedural terminology codes to identify gynecologic surgeries/procedures that occurred between 1 January 2015 to 31 December 2020 in patients with at least one of 152 international classification of disease codes. Prescription data for CPIC level A medications was extracted. Those enrolled in the Penn Medicine Biobank were assessed for DGIs. The cohort consisted of 7798 female patients and 682 were in the biobank. Up to 6 years following their surgery or procedure, 80% were ordered ≥1 CPIC level A medication. Over half (54%) of these medications were ordered within 3 days after their surgery or procedure. The most common CPIC level A medications ordered were ibuprofen (57%) and ondansetron (42%). Overall, 7% of the cohort had ≥1 known or predicted DGI with medications they were prescribed. Multi-gene pharmacogenetic testing may be beneficial to gynecologic surgery/procedure patients by assisting clinicians with prescribing postoperative analgesics and future medications.
DOI: 10.6084/m9.figshare.27861625
title: Advancing pharmacogenomics research: automated extraction of insights from PubMed using SpaCy NLP framework

description: This paper presents a methodology for automatically extracting insights from PubMed articles using a Natural Language Processing (NLP) framework. Our approach, leveraging advanced NLP techniques and Named Entity Recognition (NER), is crucial for advancing pharmacogenomics and other scientific fields that benefit from streamlined access to literature through automated services like RESTful APIs. Building a new NLP model presents several challenges. First, it is essential to have a thorough understanding of the field in order to define relevant entities. Second, the construction of a diverse and consistent set of examples is crucial. Finally, the effective utilization of pre-established models is of paramount importance, as demonstrated in this work. Our model, validated via ten-fold cross-validation, achieved over 70% recall and precision for all entities in the training set. We provide a reproducible pipeline for the scientific community and propose a structured approach for qualitative analysis and clustering of results. This methodology refines literature reviews, optimizes knowledge extraction, and supports broader application across diverse research domains. An online platform could further extend these benefits to researchers, educators, and practitioners.
DOI: 10.6084/m9.figshare.27861622.v1
title: Impact of genetic variants on fentanyl metabolism in major breast surgery patients: a candidate gene association study

description: The study aimed to examine the association of two selected candidate SNPs rs2242480 (CYP3A4) and rs1045642 (ABCB1) with metabolic ratio of plasma norfentanyl to fentanyl concentrations in patients undergoing major breast surgeries. The retrospective cross-sectional study was done in 257 female patients. DNA extraction, genotyping of selected SNPs, and drug levels measurement were employed. A total of 257 female patients were recruited with no loss to follow up. There was no significant association between the two mentioned SNPs and the metabolic ratio (<i>p</i> value &gt; 0.05). As an exploratory analysis, there was a moderately significant negative correlation between metabolic ratio and pupillary constriction to fentanyl (<i>r</i> = –0.27; <i>p</i> &lt; 0.001). There was also a weak but significant positive correlation between metabolic ratio and time for first analgesia in the postoperative period (<i>r</i> = 0.17; <i>p</i> = 0.01). There was no significant association with the selected candidate SNPs in <i>CYP3A4</i> and <i>ABCB1 genes</i> and metabolic ratio of norfentanyl to fentanyl in South Indian patients undergoing major breast surgery.