cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2hlc3l
title: CCDC 2311549: Experimental Crystal Structure Determination

description: Related Article: Rebecca L. Jones, Zoë R. Turner, Jean-Charles Buffet, Dermot O’Hare|2024|Organometallics|43|414|doi:10.1021/acs.organomet.3c00504
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hlc4m
title: CCDC 2311550: Experimental Crystal Structure Determination

description: Related Article: Rebecca L. Jones, Zoë R. Turner, Jean-Charles Buffet, Dermot O’Hare|2024|Organometallics|43|414|doi:10.1021/acs.organomet.3c00504
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hlc5n
title: CCDC 2311551: Experimental Crystal Structure Determination

description: Related Article: Rebecca L. Jones, Zoë R. Turner, Jean-Charles Buffet, Dermot O’Hare|2024|Organometallics|43|414|doi:10.1021/acs.organomet.3c00504
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hlc6p
title: CCDC 2311552: Experimental Crystal Structure Determination

description: Related Article: Rebecca L. Jones, Zoë R. Turner, Jean-Charles Buffet, Dermot O’Hare|2024|Organometallics|43|414|doi:10.1021/acs.organomet.3c00504
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g3q8l
title: CCDC 2267689: Experimental Crystal Structure Determination

description: Related Article: Soobin Lee, Hyunchul Kwon, Eun-Kyoung Jee, Jaelim Kim, Kang Ju Lee, Jungyeon Kim, Nakeun Ko, Eunsung Lee, Hyun-Suk Lim|2024|Org.Lett.|26|1100|doi:10.1021/acs.orglett.3c04387
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.13105427
title: Arctic COSMO-CLM hindcast 1982

description: COSMO-CLM Russian Arctic climate dataset
DOI: 10.6084/m9.figshare.13105427.v5
title: Arctic COSMO-CLM hindcast 1982

description: COSMO-CLM Russian Arctic climate dataset
DOI: 10.6084/m9.figshare.13105427.v4
title: Arctic COSMO-CLM hindcast 1982

description: COSMO-CLM Russian Arctic climate dataset
DOI: 10.6084/m9.figshare.3761562.v2855
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.23497649
title: Fragmented Serpentovirus Genome Alignments

description: MiSeq sequencing of novel serpentoviruse genomes resulted in sequence fragments in some samples. Included here are alignments of those genome fragments against their closest GenBank published match to examine greater genome organization.
DOI: 10.6084/m9.figshare.23497649.v1
title: Fragmented Serpentovirus Genome Alignments

description: MiSeq sequencing of novel serpentoviruse genomes resulted in sequence fragments in some samples. Included here are alignments of those genome fragments against their closest GenBank published match to examine greater genome organization.
DOI: 10.6084/m9.figshare.23497649.v2
title: Fragmented Serpentovirus Genome Alignments

description: MiSeq sequencing of novel serpentoviruse genomes resulted in sequence fragments in some samples. Included here are alignments of those genome fragments against their closest GenBank published match to examine greater genome organization.
DOI: 10.5281/zenodo.10633252
title: Random Promoter DREAM Challenge 2022: Predicting gene expression using millions of random promoter sequences

description: In "Random Promoter DREAM Challenge 2022: Predicting gene expression using millions of random promoter sequences", participants were given expression measurements of millions of randomly generated promoter sequences to train machine learning models that predict gene expression from sequences.
DOI: 10.5281/zenodo.7395396
title: Random Promoter DREAM Challenge 2022: Predicting gene expression using millions of random promoter sequences

description: In "Random Promoter DREAM Challenge 2022: Predicting gene expression using millions of random promoter sequences", participants were given expression measurements of millions of randomly generated promoter sequences to train machine learning models that predict gene expression from sequences.
DOI: 10.5281/zenodo.7395397
title: Random Promoter DREAM Challenge 2022: Predicting gene expression using millions of random promoter sequences

description: In "Random Promoter DREAM Challenge 2022: Predicting gene expression using millions of random promoter sequences", participants were given expression measurements of <strong>millions of randomly generated promoter sequences </strong>to train machine learning models that predict gene expression from sequences.
DOI: 10.26207/3dm4-8225
title: Animal interactions with Kokkocynips galls
DOI: 10.6084/m9.figshare.21401964
title: Data for Simulating Cultural Ignitions

description: Data used to simulate spatially and temporally spatially explicit cultural ignitions on a 264,399-ha landscape of Karuk Aboriginal Territory in northern California using a Monte Carlo procedure and ignition data from 1980-2016 on the same landscape.  
<br>
The cfrg point location dataset contains cultural fire regime group designations for the 326,182 points on which annual cultural ignitions were modeled. Point IDs have been randomized to protect culturally sensitive location information. 
<br>
The contemporary ignitions dataset contains data from the <br>
Spatial wildfire occurrence data for the United States (Short 2017) mapped within the study domain.
DOI: 10.6084/m9.figshare.22129481
title: Study domain and broad biophysical group spatial files

description: Study spatial domain and broad-scale biophysical groupings used to for study which simulated spatially and temporally spatially explicit cultural ignitions on a 264,399-ha landscape of Karuk Aboriginal Territory in northern California using a Monte Carlo procedure.
DOI: 10.13011/m3-e9jr-6g69
title: Oxygen Tracer Diffusion in Amorphous Hafnia Films for Resistive Memory
DOI: 10.6084/m9.figshare.25236931
title: February 2024 release of the Fitness Browser: RB-TnSeq data for diverse bacteria and archaea

description: This data set includes 7,552 genome-wide fitness experiments for 46 bacteria and 2 archaea. Data were collected using pools of randomly barcoded transposons (RB-TnSeq). All files are gzipped. After unzipping, the files are:code.tar -- a snapshot of the code. Also see the code repositoryfeba.db -- the sqlite3 database, see schema in lib/db_setup_tables.sqlaaseqs -- the protein sequences in fasta format, with identifiers of the form orgId:locusIddb.StrainFitness.* -- a tab-delimited table of per-strain fitness values, one per organism. The suffix is the orgId. (Gene fitness values are included in feba.db, but per-strain fitness values are not.)<br>
DOI: 10.34740/kaggle/dsv/7639596
title: crypto-data-daily-updates
DOI: 10.60863/sf/xzoyj3
title: Distinguishing shadows from surface boundaries using local achromatic cues

description: Image databases, model code and training data Abstract: In order to accurately parse the visual scene into distinct surfaces, it is essential to determine whether a local luminance edge is caused by a boundary between two surfaces or a shadow cast across a single surface. Previous studies have demonstrated that local chromatic cues may help to distinguish edges caused by shadows from those caused by surface boundaries, but the information potentially available in local achromatic cues like contrast, texture, and penumbral blur remains poorly understood. In this study, we develop and analyze a large database of hand-labeled achromatic shadow edges to better understand what image properties distinguish them from occlusion edges. We find that both the highest contrast as well as the lowest contrast edges are more likely to be occlusions than shadows, extending previous observations based on a more limited image set. We also find that contrast cues alone can reliably distinguish the two edge categories with nearly 70% accuracy at 40x40 resolution. Logistic regression on a Gabor Filter bank (GFB) modeling a population of V1 simple cells separates the categories with nearly 80% accuracy, and furthermore exhibits tuning to penumbral blur. A Filter-Rectify Filter (FRF) style neural network extending the GFB model performed at better than 80% accuracy, and exhibited blur tuning and greater sensitivity to texture differences. We compare human performance on our edge classification task to that of the FRF and GFB models, finding the best human observers attaining the same performance as the machine classifiers. Several analyses demonstrate both classifiers exhibit significant positive correlation with human behavior, although we find a slightly better agreement on an image-by-image basis between human performance and the FRF model than the GFB model, suggesting an important role for texture.
DOI: 10.6084/m9.figshare.25236952
title: Port Alberni modern and core observations.

description: Port Alberni modern and core observations dataset. The first sheet in the dataset includes modern observations of sample stations, LOI%, plant vegetation, elevation (SWLI), relative abundance of foraminifera, and testate amoebae. The second sheet includes core observations of LOI %, prior ranges (SWLI), relative abundance of fossil foraminifera and testate amoebae.
DOI: 10.6084/m9.figshare.25236952.v1
title: Port Alberni modern and core observations.

description: Port Alberni modern and core observations dataset. The first sheet in the dataset includes modern observations of sample stations, LOI%, plant vegetation, elevation (SWLI), relative abundance of foraminifera, and testate amoebae. The second sheet includes core observations of LOI %, prior ranges (SWLI), relative abundance of fossil foraminifera and testate amoebae.
DOI: 10.26207/dvza-dg97
title: Maternal ornaments and prenatal corticosterone correlate negatively with offspring survival and sexual ornamentation at maturity
DOI: 10.5517/ccdc.csd.cc2j6m2g
title: CCDC 2330055: Experimental Crystal Structure Determination

description: Related Article: B.B. Vargas, H.D. Arman, R.A. Adrian|2024|IUCrData|9|x240109|doi:10.1107/S2414314624001093
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/7639635
title: Public Opinion Russia Ukraine War (Updated Daily)
DOI: 10.15468/4vfdk2
title: Caracterización botánica para el registro del Banco de Hábitat Sabanas de altillanura del Meta "El Amparo"

description: Los bancos de hábitat se definen como un área en la que se pueden realizar actividades de preservación, restauración, rehabilitación, recuperación y/o uso sostenible para la conservación de la biodiversidad. Así mismo se convierten en un mecanismo de implementación de inversiones ambientales y compensaciones, ampliamente utilizado en otros países, los cuales han demostrado generar resultados permanentes y sostenibles en materia de conservación de ecosistemas, contribuyendo en la implementación de las medidas compensatorias.
El recurso contiene la información de flora recopilada (678 registros biológicos) durante el proceso de registro ante el Ministerio de Ambiente del Banco de Hábitat Sabanas de Altillanura del Meta "El Amparo" ubicado en la reserva natural El Amparo en el Municipio de Puerto López. La información fue recolectada a través de un muestreo rápido mediante el establecimiento de parcelas de vegetación durante el mes de febrero del 2022. Taxonómicamente el recurso está dividido en 4 clases, 21 órdenes, 41 familias, 80 géneros y 75 especies.
DOI: 10.34683/sr90
title: StoneRounds Case: SR90
title: AR Retinitis Pigmentosa

description: StoneRounds Case SR90 was diagnosed with AR Retinitis Pigmentosa likely caused by mutations in the gene: USH2A.
DOI: 10.5281/zenodo.10672578
title: De novo transcriptome assembly for Karenia papilionacea using Illumina sequencing

description: Raw reads were pre-processed by removing the adaptors and low-quality reads using BBMap. The filtered reads were normalized for depth based on kmer counts using BBNorm function. De novo transcriptomes were generated using both Trinity and velvet-oases. CD-HIT-EST was used to merge the resulting two de novo transcriptomes and reduce the transcript redundancy to 90% similarity and unique genes were predicted using transdecoder. Raw reads can be found in GenBank PRJNA912133.
DOI: 10.5281/zenodo.10672579
title: De novo transcriptome assembly for Karenia papilionacea using Illumina sequencing

description: Raw reads were pre-processed by removing the adaptors and low-quality reads using BBMap. The filtered reads were normalized for depth based on kmer counts using BBNorm function. De novo transcriptomes were generated using both Trinity and velvet-oases. CD-HIT-EST was used to merge the resulting two de novo transcriptomes and reduce the transcript redundancy to 90% similarity and unique genes were predicted using transdecoder. Raw reads can be found in GenBank PRJNA912133.
DOI: 10.5281/zenodo.8309834
title: Social cognition and adjustment in adult survivors of pediatric central nervous system tumors

description: This is a dataset corresponding to data utilized in the publication titled "Social cognition and adjustment in adult survivors of pediatric central nervous system tumors" reported in Papini et al., 2023 (DOI: 10.1002/cncr.34889).

The file contains:



demographic variables: sex and age at assessment (in years)

clinical variables: clinical group, age at diagnosis (in years), time since diagnosis (in years), intelligence score (in standard score), tumor location, dose of cranial radiation (in Gy), chemotherapy agents (yes/no) and doses (in mg/m2), neurosurgery type, diagnosis, and presence of stoke, seizure and hearing loss

functional outcomes: independent living, marital status, education, and employment

social cognition measures (in scaled scores): Social Perception, Affect Naming, Prosody, Prosody Pair Matching, Faces Immediate, Faces Delayed, Faces Content, Faces Spatial, Names Immediate, Names Delayed, Proper Names, Activity

social adjustment measures (in T-scores): Companionship, Instrumental Support, Emotional Support, Informational Support, Social Isolation, Ability to Participate in Social Roles and Activities, and Satisfaction with Social Roles and Activities

neurocognitive functioning measures: executive function impairment (yes/no), non-verbal reasoning impairment (yes/no) and the BRIEF Global Executive Composite score (in T-score)


Please note that the time variables (i.e., age at assessment, age at diagnosis, and time since diagnosis) were rounded to whole years to ensure deidentification for sharing purposes.

Please cite the appropriate publications (this repository and corresponding publication above) in any communications or publications arising directly or indirectly from these data. 

Funding

The study was supported by National Cancer Institute (U01 CA195547, Hudson and Ness) and St. Baldrick’s Foundation (Research Scholar Award, Brinkman). Support to St Jude Children’s Research Hospital was also provided by the National Cancer Institute Cancer Center Support Grant (CORE) Grant (P30 CA21765, Roberts) and the American Lebanese Syrian Associated Charities.
DOI: 10.5281/zenodo.8309835
title: Social cognition and adjustment in adult survivors of pediatric central nervous system tumors

description: This is a dataset corresponding to data utilized in the publication titled "Social cognition and adjustment in adult survivors of pediatric central nervous system tumors" reported in Papini et al., 2023 (DOI: 10.1002/cncr.34889).

The file contains:



demographic variables: sex and age at assessment (in years)

clinical variables: clinical group, age at diagnosis (in years), time since diagnosis (in years), intelligence score (in standard score), tumor location, dose of cranial radiation (in Gy), chemotherapy agents (yes/no) and doses (in mg/m2), neurosurgery type, diagnosis, and presence of stoke, seizure and hearing loss

functional outcomes: independent living, marital status, education, and employment

social cognition measures (in scaled scores): Social Perception, Affect Naming, Prosody, Prosody Pair Matching, Faces Immediate, Faces Delayed, Faces Content, Faces Spatial, Names Immediate, Names Delayed, Proper Names, Activity

social adjustment measures (in T-scores): Companionship, Instrumental Support, Emotional Support, Informational Support, Social Isolation, Ability to Participate in Social Roles and Activities, and Satisfaction with Social Roles and Activities

neurocognitive functioning measures: executive function impairment (yes/no), non-verbal reasoning impairment (yes/no) and the BRIEF Global Executive Composite score (in T-score)


Please note that the time variables (i.e., age at assessment, age at diagnosis, and time since diagnosis) were rounded to whole years to ensure deidentification for sharing purposes.

Please cite the appropriate publications (this repository and corresponding publication above) in any communications or publications arising directly or indirectly from these data. 

Funding

The study was supported by National Cancer Institute (U01 CA195547, Hudson and Ness) and St. Baldrick’s Foundation (Research Scholar Award, Brinkman). Support to St Jude Children’s Research Hospital was also provided by the National Cancer Institute Cancer Center Support Grant (CORE) Grant (P30 CA21765, Roberts) and the American Lebanese Syrian Associated Charities.
DOI: 10.5281/zenodo.10672588
title: De novo transcriptome assembly for Karenia selliformis using Illumina sequencing

description: Raw reads were pre-processed by removing the adaptors and low-quality reads using BBMap. The filtered reads were normalized for depth based on kmer counts using BBNorm function. De novo transcriptomes were generated using both Trinity and velvet-oases. CD-HIT-EST was used to merge the resulting two de novo transcriptomes and reduce the transcript redundancy to 90% similarity and unique genes were predicted using transdecoder. Raw reads can be found in GenBank PRJNA912133.
DOI: 10.5281/zenodo.10672589
title: De novo transcriptome assembly for Karenia selliformis using Illumina sequencing

description: Raw reads were pre-processed by removing the adaptors and low-quality reads using BBMap. The filtered reads were normalized for depth based on kmer counts using BBNorm function. De novo transcriptomes were generated using both Trinity and velvet-oases. CD-HIT-EST was used to merge the resulting two de novo transcriptomes and reduce the transcript redundancy to 90% similarity and unique genes were predicted using transdecoder. Raw reads can be found in GenBank PRJNA912133.
DOI: 10.6084/m9.figshare.25233031
title: NIMBY or YIMBY? Understanding the complex relationship between foreign military bases and host societies - Narrative Framework Policy (Appendix)

description: Appendix presents an analysis of Narrative Framework Policy (NFP) of selected publications within the review article "NIMBY or YIMBY? Understanding the complex relationship between foreign military bases and host societies".
DOI: 10.6084/m9.figshare.25233031.v1
title: NIMBY or YIMBY? Understanding the complex relationship between foreign military bases and host societies - Narrative Framework Policy (Appendix)

description: Appendix presents an analysis of Narrative Framework Policy (NFP) of selected publications within the review article "NIMBY or YIMBY? Understanding the complex relationship between foreign military bases and host societies".
DOI: 10.6084/m9.figshare.25230077
title: Green Algae Phylogenetics Data Files

description: Files for green algae transcriptome phylogenetics analysis.
DOI: 10.5517/ccdc.csd.cc2j73vr
title: CCDC 2330544: Experimental Crystal Structure Determination

description: Related Article: L. Faubert, H.D. Arman, R.A. Adrian|2024|IUCrData|9|x240114|doi:10.1107/S2414314624001147
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10672628
title: DSA-380 experimental data and non-linear model in Matlab

description: Experimental data of the DSA 380 pantograph is provided in a dataset and the Matlab files neccesary to simulate a model of the pantograph
DOI: 10.5281/zenodo.10672629
title: DSA-380 experimental data and non-linear model in Matlab

description: Experimental data of the DSA 380 pantograph is provided in a dataset and the Matlab files neccesary to simulate a model of the pantograph
DOI: 10.6084/m9.figshare.25111997
title: Neomenia megatrapezata and Epimenia babai Extended Genome Data

description: Neomenia megatrapezata and Epimenia babai genome assemblies and annotation plus all key intermediate files. Additional tables with the list of proteomes used for gene annotation and the full BUSCO reports of gene models are available under the file: YapChiongco_2024_SupplementaryTables.doc.Neomenia_Nanopore_GenomeFiles.zip Epimenia_Nanopore_GenomeFiles.zip each contain the content below for the respective species. Contents are numbered in the order steps were preformed.01_GenomeScope02_MaSuRCA03_Redundans04_Pilon05_GenomeAssembly_BUSCOandQuast06_RepeatModelerandMasker07_BRAKER08_AnnotationBUSCO
DOI: 10.5281/zenodo.10655683
title: The Cryptic Bacterial Microproteome
DOI: 10.5281/zenodo.10655682
title: The Cryptic Bacterial Microproteome

description: In this comprehensive study of intergenic smORFs (ismORFs, 15–70 codons) in 5,668 bacterial genomes of the family Enterobacteriaceae, we identified 67,297 microprotein clusters with signatures of purifying selection.
DOI: 10.5281/zenodo.10672687
title: The Cryptic Bacterial Microproteome

description: In this comprehensive study of intergenic smORFs (ismORFs, 15–70 codons) in 5,668 bacterial genomes of the family Enterobacteriaceae, we identified 67,297 microprotein clusters with signatures of purifying selection.