cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0207317.10fu
title: SH0207317.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0207318.10fu
title: SH0207318.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0207319.10fu
title: SH0207319.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0207320.10fu
title: SH0207320.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.17632/5kjwwcv7vr
title: Path and obstacle detection vehicle using YOLO

description: In this repository, you will find the resources used in the article “A neural network approach to path-detection and self-driving vehicles using YOLO and one-layer neuro-adaptive control”, published in 2025 in the journal Engineering Applications of Artificial Intelligence.

The work presents the development and implementation—both in simulation and in real-time—of a navigation and obstacle detection system based on a 4-wheeled omnidirectional mobile robot. The system integrates computer vision techniques with deep and shallow artificial neural networks, enabling the robot to autonomously detect and follow paths of arbitrary shape (closed circuits or straight lines) and to identify obstacles using an onboard camera.

Path detection is achieved through the training of two YOLO (You Only Look Once) models, while obstacle detection relies on the Tiny-YOLOv2 state-of-the-art architecture. Additional techniques such as transfer learning, coordinate projection, and trajectory generation algorithms are employed to enhance system performance.

Furthermore, a single-layer neuro-adaptive compensation control based on filtered error is implemented to regulate the wheel velocities of the omnidirectional robot. This neural controller compensates for unknown nonlinear dynamics of the robot, with network weights estimated online using appropriate adaptive update laws.

This repository is intended to support reproducibility and further research in autonomous mobile robotics, vision-based navigation, and neuro-adaptive control systems.
DOI: 10.17632/5kjwwcv7vr.1
title: Path and obstacle detection vehicle using YOLO

description: In this repository, you will find the resources used in the article “A neural network approach to path-detection and self-driving vehicles using YOLO and one-layer neuro-adaptive control”, published in 2025 in the journal Engineering Applications of Artificial Intelligence.

The work presents the development and implementation—both in simulation and in real-time—of a navigation and obstacle detection system based on a 4-wheeled omnidirectional mobile robot. The system integrates computer vision techniques with deep and shallow artificial neural networks, enabling the robot to autonomously detect and follow paths of arbitrary shape (closed circuits or straight lines) and to identify obstacles using an onboard camera.

Path detection is achieved through the training of two YOLO (You Only Look Once) models, while obstacle detection relies on the Tiny-YOLOv2 state-of-the-art architecture. Additional techniques such as transfer learning, coordinate projection, and trajectory generation algorithms are employed to enhance system performance.

Furthermore, a single-layer neuro-adaptive compensation control based on filtered error is implemented to regulate the wheel velocities of the omnidirectional robot. This neural controller compensates for unknown nonlinear dynamics of the robot, with network weights estimated online using appropriate adaptive update laws.

This repository is intended to support reproducibility and further research in autonomous mobile robotics, vision-based navigation, and neuro-adaptive control systems.
DOI: 10.17632/rz3bc93ycy
title: Rhesus macaque "RED" symmetrical brain atlas

description: This atlas was developed in Laboratory of Neuropsychology, National Institute of Mental Health, National Institutes of Health in the 1960s and has been used in numerous studies as a reference of a standard rhesus macaque brain. The atlas was, and still is, used for surgical planning, lesion reconstructions, illustrations, and more. The attached file is a PDF copy of the last symmetrical version of the atlas scanned in November 2006. The original contributors to this atlas are Mortimer Mishkin, Hal Rosvold and a female technician whose name is unknown.
DOI: 10.17632/rz3bc93ycy.1
title: Rhesus macaque "RED" symmetrical brain atlas

description: This atlas was developed in Laboratory of Neuropsychology, National Institute of Mental Health, National Institutes of Health in the 1960s and has been used in numerous studies as a reference of a standard rhesus macaque brain. The atlas was, and still is, used for surgical planning, lesion reconstructions, illustrations, and more. The attached file is a PDF copy of the last symmetrical version of the atlas scanned in November 2006. The original contributors to this atlas are Mortimer Mishkin, Hal Rosvold and a female technician whose name is unknown.
DOI: 10.17632/gncp43xvbh
title: Revelation of Achromobacter spanius B5 as free living nitrogen fixer from rhizosphere soil sample of bamboo

description: Ammonification
Biological nitrogen fixation
Growth at different temperature, pH, salt concentration, drought condition
Seed germination
DOI: 10.17632/gncp43xvbh.1
title: Revelation of Achromobacter spanius B5 as free living nitrogen fixer from rhizosphere soil sample of bamboo

description: Ammonification
Biological nitrogen fixation
Growth at different temperature, pH, salt concentration, drought condition
Seed germination
DOI: 10.17632/86khbzhz8y
title: Rosas et al 2025_Inhibition of Delay a Century Later

description: Supplementary materials of "Inhibition of Delay a Century Later: A Systematic Review and Meta-Analysis".
Rosas, Juan M., Callejas-Aguilera, José E., & Ramos-Álvarez, Manuel M.

Included are: 
All the details of the systematic review: Rosas et al. 2025_Inhibition of Delay a Century Later_Table2.xlsx all the details of the meta-analysis: Rosas et al. 2025_Inhibition of Delay a Century Later_Table3.xlsx
DOI: 10.17632/86khbzhz8y.2
title: Rosas et al 2025_Inhibition of Delay a Century Later

description: Supplementary materials of "Inhibition of Delay a Century Later: A Systematic Review and Meta-Analysis".
Rosas, Juan M., Callejas-Aguilera, José E., & Ramos-Álvarez, Manuel M.

Included are: 
All the details of the systematic review: Rosas et al. 2025_Inhibition of Delay a Century Later_Table2.xlsx all the details of the meta-analysis: Rosas et al. 2025_Inhibition of Delay a Century Later_Table3.xlsx
DOI: 10.17632/d5426zv9b5
title: Fu yulian

description: The dataset includes Western blot, ROS, and IC50 data. Each experiment was conducted using SCC25 and CAL27 cell lines, with three technical replicates and three biological replicates per experiment. For Western Bolt experiments, cells underwent specific treatments followed by protein extraction. Quantification was performed via BVA (70V-30min, 100V-90min), after which exposure was conducted. Image software measured the gray values of each band, yielding relative expression levels as target protein gray value/reference protein gray value.
ROS: Cells were seeded in 96-well plates. After confluence, reagents and drugs were added. Data were measured in a fluorometer after 24 hours. Final relative ROS levels were calculated using the method described in the XLSX table, including blank controls, negative controls, and experimental groups. Calculation method: Experimental group OD value - average value of blank wells to eliminate systematic error. Data is then normalized (corrected experimental group OD value / average value of negative control group) to obtain relative ROS levels.
IC50: Similarly, cells were seeded in 96-well plates. After attachment, cisplatin at varying concentrations was added. After 24 hours, OD values were measured in the microplate reader for the blank wells, negative control group, and experimental group.
Calculation method: Same as the ROS calculation method.
DOI: 10.17632/d5426zv9b5.1
title: Fu yulian

description: The dataset includes Western blot, ROS, and IC50 data. Each experiment was conducted using SCC25 and CAL27 cell lines, with three technical replicates and three biological replicates per experiment. For Western Bolt experiments, cells underwent specific treatments followed by protein extraction. Quantification was performed via BVA (70V-30min, 100V-90min), after which exposure was conducted. Image software measured the gray values of each band, yielding relative expression levels as target protein gray value/reference protein gray value.
ROS: Cells were seeded in 96-well plates. After confluence, reagents and drugs were added. Data were measured in a fluorometer after 24 hours. Final relative ROS levels were calculated using the method described in the XLSX table, including blank controls, negative controls, and experimental groups. Calculation method: Experimental group OD value - average value of blank wells to eliminate systematic error. Data is then normalized (corrected experimental group OD value / average value of negative control group) to obtain relative ROS levels.
IC50: Similarly, cells were seeded in 96-well plates. After attachment, cisplatin at varying concentrations was added. After 24 hours, OD values were measured in the microplate reader for the blank wells, negative control group, and experimental group.
Calculation method: Same as the ROS calculation method.
DOI: 10.15468/dl.wvsbaq
title: Occurrence Download

description: A dataset containing 699 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((4.49543 43.83569,4.46856 43.83294,4.46078 43.83103,4.4513 43.82436,4.45838 43.81837,4.4746 43.81138,4.49972 43.81711,4.50322 43.82744,4.49543 43.83569))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 699 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069084-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30970840
title: Supplementary Material for: Anlotinib plus chemotherapy for the Treatment of Refractory Primary Cardiac Intimal Sarcoma: A Case Report

description: Introduction: Primary cardiac intimal sarcoma (CIS) is a rare and highly malignant soft tissue tumor associated with an extremely poor prognosis. To date, there are no established treatment guidelines for CIS in clinical practice. 
Case Presentation: A 44-year-old man was diagnosed with left atrial intimal sarcoma. Forty-two days after radical surgical resection, he developed local recurrence accompanied by brain and gluteus medius metastases. The patient first received emergency radiotherapy for intracranial metastases, followed by six cycles of systemic chemotherapy with ifosfamide and epirubicin, combined with targeted therapy using anlotinib. Ultimately, he achieved an overall survival (OS) of 17 months. 
Conclusion: To our knowledge, this is the first report describing the therapeutic efficacy of anlotinib in cardiac intimal sarcoma. This case highlights the potential role of anlotinib as a promising therapeutic option for this rare and aggressive malignancy.
DOI: 10.6084/m9.figshare.30970840.v1
title: Supplementary Material for: Anlotinib plus chemotherapy for the Treatment of Refractory Primary Cardiac Intimal Sarcoma: A Case Report

description: Introduction: Primary cardiac intimal sarcoma (CIS) is a rare and highly malignant soft tissue tumor associated with an extremely poor prognosis. To date, there are no established treatment guidelines for CIS in clinical practice. 
Case Presentation: A 44-year-old man was diagnosed with left atrial intimal sarcoma. Forty-two days after radical surgical resection, he developed local recurrence accompanied by brain and gluteus medius metastases. The patient first received emergency radiotherapy for intracranial metastases, followed by six cycles of systemic chemotherapy with ifosfamide and epirubicin, combined with targeted therapy using anlotinib. Ultimately, he achieved an overall survival (OS) of 17 months. 
Conclusion: To our knowledge, this is the first report describing the therapeutic efficacy of anlotinib in cardiac intimal sarcoma. This case highlights the potential role of anlotinib as a promising therapeutic option for this rare and aggressive malignancy.
DOI: 10.6084/m9.figshare.30970843
title: Supplementary Material for: The Cutting Edge: Clinicopathology minireview IgA Nephropathy

description: Recent years have seen an explosion of interest in the pathogenesis and therapy of immunoglobulin A nephropathy (IgAN). Large cohort studies have facilitated improvements in disease classification and prognosis, including the establishment and validation of a standard pathological classification, the Oxford Classification. Landmark treatment studies published in the past several years have solidified a basic therapeutic approach, emphasizing the value of adding immunomodulatory drugs to supportive care for aggressive disease. There are currently a large number of therapies with diverse mechanisms of action in active development for IgAN, promising at least to enhance our understanding of key pathogenic pathways, and at best to eventually prove useful in slowing or stopping the progression of IgAN. In this Cutting Edge feature, we use a clinical case to review and discuss the current standard of care in the diagnosis and treatment of IgAN, as well as highlighting emerging approaches to treatment.
DOI: 10.6084/m9.figshare.30970843.v1
title: Supplementary Material for: The Cutting Edge: Clinicopathology minireview IgA Nephropathy

description: Recent years have seen an explosion of interest in the pathogenesis and therapy of immunoglobulin A nephropathy (IgAN). Large cohort studies have facilitated improvements in disease classification and prognosis, including the establishment and validation of a standard pathological classification, the Oxford Classification. Landmark treatment studies published in the past several years have solidified a basic therapeutic approach, emphasizing the value of adding immunomodulatory drugs to supportive care for aggressive disease. There are currently a large number of therapies with diverse mechanisms of action in active development for IgAN, promising at least to enhance our understanding of key pathogenic pathways, and at best to eventually prove useful in slowing or stopping the progression of IgAN. In this Cutting Edge feature, we use a clinical case to review and discuss the current standard of care in the diagnosis and treatment of IgAN, as well as highlighting emerging approaches to treatment.
DOI: 10.17632/s7zs8rhvtn
title: Hydro-climatic Projections and Computational Framework for the Maamora Aquifer: SPI, SPEI, GRDI, and De Martonne Aridity Index Datasets using CORDEX and WRF

description: Data Acquisition:

The climate data for this study was retrieved from the ESGF MetaGrid. We utilized a multi-model ensemble consisting of four downscaled and bias-adjusted regional climate models from the CORDEX framework: CNRM-CM5, EC-EARTH, IPSL-CM5A-MR, and MPI-ESM-LR. These were complemented by a regionally-configured Weather Research and Forecasting (WRF) model to capture climate data specific to Morocco. The variables extracted include monthly precipitation and minimum/maximum temperatures, which are essential for calculating climate indices with a 12-month lead time to assess long-term drought trends.

Meteorological Drought Assessment:

We employed three distinct indices to characterize atmospheric water deficits:

Standardized Precipitation Index (SPI): Calculated by fitting annual precipitation data to a Gamma distribution to quantify standardized anomalies.

Standardized Precipitation-Evapotranspiration Index (SPEI): Calculated using the Hargreaves method for Potential Evapotranspiration (PET) to integrate temperature-driven moisture demand.

De Martonne Aridity Index: A classic climatological measure used to classify the shift toward regional aridification based on annual temperature and precipitation.



Hydrological Drought Assessment
Future aquifer fluctuations and groundwater stress were evaluated through:

Groundwater Recharge Estimation: Applying established infiltration coefficients to precipitation data across three distinct aquifer zones (Coastal, Central, and Eastern).

Groundwater Recharge Drought Index (GRDI): A standardized metric conceptsually similar to SPI but applied to annual recharge time series. To ensure statistical robustness, recharge data were fitted to six candidate probability distributions (Gamma, Lognormal, Weibull, Extreme Value, Rician, and Nakagami), with the Kolmogorov–Smirnov (K–S) test used to identify the best-fit model for each climate scenario.
DOI: 10.17632/s7zs8rhvtn.1
title: Hydro-climatic Projections and Computational Framework for the Maamora Aquifer: SPI, SPEI, GRDI, and De Martonne Aridity Index Datasets using CORDEX and WRF

description: Data Acquisition:

The climate data for this study was retrieved from the ESGF MetaGrid. We utilized a multi-model ensemble consisting of four downscaled and bias-adjusted regional climate models from the CORDEX framework: CNRM-CM5, EC-EARTH, IPSL-CM5A-MR, and MPI-ESM-LR. These were complemented by a regionally-configured Weather Research and Forecasting (WRF) model to capture climate data specific to Morocco. The variables extracted include monthly precipitation and minimum/maximum temperatures, which are essential for calculating climate indices with a 12-month lead time to assess long-term drought trends.

Meteorological Drought Assessment:

We employed three distinct indices to characterize atmospheric water deficits:

Standardized Precipitation Index (SPI): Calculated by fitting annual precipitation data to a Gamma distribution to quantify standardized anomalies.

Standardized Precipitation-Evapotranspiration Index (SPEI): Calculated using the Hargreaves method for Potential Evapotranspiration (PET) to integrate temperature-driven moisture demand.

De Martonne Aridity Index: A classic climatological measure used to classify the shift toward regional aridification based on annual temperature and precipitation.



Hydrological Drought Assessment
Future aquifer fluctuations and groundwater stress were evaluated through:

Groundwater Recharge Estimation: Applying established infiltration coefficients to precipitation data across three distinct aquifer zones (Coastal, Central, and Eastern).

Groundwater Recharge Drought Index (GRDI): A standardized metric conceptsually similar to SPI but applied to annual recharge time series. To ensure statistical robustness, recharge data were fitted to six candidate probability distributions (Gamma, Lognormal, Weibull, Extreme Value, Rician, and Nakagami), with the Kolmogorov–Smirnov (K–S) test used to identify the best-fit model for each climate scenario.
DOI: 10.17632/cgh4cvwv4z
title: Mitochondrial translation elongation speed controls OXPHOS biogenesis by coordinating the synthesis and folding of mitochondrially encoded proteins

description: 1. Source data files: the source data of statistical graph in Figures.
2. Supplementary information: the orginal fluorescence photos and original image of western blot and northern blot in Figures.
DOI: 10.17632/cgh4cvwv4z.1
title: Mitochondrial translation elongation speed controls OXPHOS biogenesis by coordinating the synthesis and folding of mitochondrially encoded proteins

description: 1. Source data files: the source data of statistical graph in Figures.
2. Supplementary information: the orginal fluorescence photos and original image of western blot and northern blot in Figures.