cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21431091.v1
title: Circulating tumor DNA is a prognostic biomarker in metastatic melanoma patients treated with chemoimmunotherapy and BRAF inhibitor

description: Detectable circulating tumor DNA (ctDNA) has been associated with worse prognosis in melanoma patients. We studied plasma ctDNA as a prognostic biomarker in 19 patients with metastatic melanoma and a detectable tumor mutation (13 BRAF, 5 NRAS, and 1 KRAS). Patients had received chemotherapy, interferon-alpha, and vemurafenib in a prospective clinical trial. Mutant allele frequency (MAF %) was determined with droplet digital PCR from pretreatment and sequential plasma samples. Higher pretreatment plasma ctDNA levels (MAF ≥3%) and detectable plasma ctDNA levels (MAF &gt;0%) at the time of radiologically confirmed best objective response were associated with poor prognosis even when accounting for other relevant prognostic factors including performance status, tumor mutation, metastasis stage, and lactate dehydrogenase levels in multivariable analysis. Higher pretreatment plasma ctDNA levels and sustained detectable plasma ctDNA levels during treatment indicated poor prognosis in metastatic melanoma patients.
DOI: 10.6084/m9.figshare.20649664
title: Periodic trends in geographical variation of prostate cancer incidence and mortality in Finland between 1985 and 2019

description: Evaluation of regional variation of prostate cancer (PCa) incidence and PCa-specific mortality is essential in the assessment of equity in a national healthcare system. We evaluated PCa incidence and PCa-specific mortality between different municipalities and hospital districts in Finland over 1985–2019. Men diagnosed with PCa in Finland from 1985 through 2019 were retrieved from Finnish Cancer Registry. Age-standardized PCa incidence and mortality rates were estimated by municipality and hospital district as well as municipality urbanization, education, and income level using hierarchical Bayesian modeling. Standard deviations (SD) of the regional rates were compared between periods from 1985–1989 to 2015–2019. We identified 123,185 men diagnosed with any stage PCa between 1985 and 2019. SD of PCa incidence rate (per 100,000 person-years) showed that the total variation of PCa incidence between different municipalities was substantial and varied over time: from 22.2 (95% CI, 17.1–27.8) in 1985–1989 to 56.5 (95% CI, 49.8–64.5) in 2000–2004. The SD of PCa mortality rate between all municipalities was from 9.0 (95% CI, 6.6–11.8) in 2005–2009 to 2.4 (95% CI, 0.9–4.8) in 2015–2019. There was a trend toward a lower PCa-specific mortality rate in municipalities with higher education level. Regional variation in the incidence rate of PCa became more evident after initiation of PSA testing in Finland, which indicates that early diagnostic practice (PSA testing) of PCa has been different in different parts of the country. Variation in the national PCa mortality rate was indeed recognizable, however, this variation diminished at the same time as the mortality rate declined in Finland. It seems that after the initiation period of PSA testing, PSA has equalized PCa mortality outcomes in Finland.
DOI: 10.6084/m9.figshare.20649664.v1
title: Periodic trends in geographical variation of prostate cancer incidence and mortality in Finland between 1985 and 2019

description: Evaluation of regional variation of prostate cancer (PCa) incidence and PCa-specific mortality is essential in the assessment of equity in a national healthcare system. We evaluated PCa incidence and PCa-specific mortality between different municipalities and hospital districts in Finland over 1985–2019. Men diagnosed with PCa in Finland from 1985 through 2019 were retrieved from Finnish Cancer Registry. Age-standardized PCa incidence and mortality rates were estimated by municipality and hospital district as well as municipality urbanization, education, and income level using hierarchical Bayesian modeling. Standard deviations (SD) of the regional rates were compared between periods from 1985–1989 to 2015–2019. We identified 123,185 men diagnosed with any stage PCa between 1985 and 2019. SD of PCa incidence rate (per 100,000 person-years) showed that the total variation of PCa incidence between different municipalities was substantial and varied over time: from 22.2 (95% CI, 17.1–27.8) in 1985–1989 to 56.5 (95% CI, 49.8–64.5) in 2000–2004. The SD of PCa mortality rate between all municipalities was from 9.0 (95% CI, 6.6–11.8) in 2005–2009 to 2.4 (95% CI, 0.9–4.8) in 2015–2019. There was a trend toward a lower PCa-specific mortality rate in municipalities with higher education level. Regional variation in the incidence rate of PCa became more evident after initiation of PSA testing in Finland, which indicates that early diagnostic practice (PSA testing) of PCa has been different in different parts of the country. Variation in the national PCa mortality rate was indeed recognizable, however, this variation diminished at the same time as the mortality rate declined in Finland. It seems that after the initiation period of PSA testing, PSA has equalized PCa mortality outcomes in Finland.
DOI: 10.5519/qd.ifhpg380
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1003 records)
DOI: 10.6084/m9.figshare.21572412
title: Data File for "A Data Envelopment Analysis of West Virginia School Districts"

description: Data File for: Eduardo Minuci, Amir Borges Ferreira Neto, and Joshua Hall, “A Data Envelopment Analysis of West Virginia School Districts,” <em>Heliyon</em> 5(7) 2019: e01990
DOI: 10.6084/m9.figshare.21572412.v1
title: Data File for "A Data Envelopment Analysis of West Virginia School Districts"

description: Data File for: Eduardo Minuci, Amir Borges Ferreira Neto, and Joshua Hall, “A Data Envelopment Analysis of West Virginia School Districts,” <em>Heliyon</em> 5(7) 2019: e01990
DOI: 10.5519/qd.7lc702jq
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (29808 records)
DOI: 10.25452/figshare.plus.21375565.v3
title: Full scale, microscopically resolved tomographies of sandstone and carbonate rocks augmented by experimental porosity and permeability values

description: <strong>About the Data</strong> We report a dataset containing full-scale, three-dimensional images of rock plugs for application in digital rock and capillary network analysis. Specifically, we have acquired microscopically resolved tomography datasets of 18 cylindrical sandstone and carbonate rock samples having lengths of 25.4 mm and diameters of 9.5 mm, respectively. The rock plug samples measured in this work have porosity and permeability values ranging from 8% to 30% and 0.4 mD to above 5D, respectively. <br> <strong>Dataset Structure</strong> Researchers interested in using this dataset will find five different volume types and formats for each sample. The suffix inside the parenthesis designates the naming scheme used for the dataset files: <br> <strong>Full Frame</strong> <em><strong>(_grayscale_full</strong></em><strong>):</strong> Data obtained from the reconstruction of the µCT projections. During reconstruction, the volume edges are removed but the largest inscribed parallelepiped within the plug is retained, thus leading to different sized parallelepipeds. <strong>Standard</strong> <em><strong>(_grayscale_standard</strong></em><strong>):</strong> Volume cropped into a standard size of 2500x2500x7500 voxels. <strong>Cropped</strong> <strong>cubes (_grayscale_ROI-X) :</strong> 2500x2500x2500 voxel cubes extracted from the standard volume. The X designates the number of the cube, with values ranging from 1 to 3, cut top-down from the parallelepiped. <strong>Filtered cubes (_grayscale_filtered_ROI-X):</strong> Data obtained from the grayscale cubes through the application of contrast enhancement and noise reduction filters. The X designates the number of the cube, with values ranging from 1 to 3, cut top-down from the parallelepiped. <strong>Binarized cubes (_binary_ROI-X):</strong> Binary image data obtained from the filtered grayscale cubes. Each grayscale cube was segmented at threshold level calculated using the Multi-Otsu algorithm with a number of classes set to three. The X designates the number of the cube, with values ranging from 1 to 3, cut top-down from the parallelepiped. Alongside the volumes described above, the following supporting information is also provided: <strong>HDR file:</strong> File containing the cube size information for each sample. File Naming The <strong>Dataset_Structure.xlsx</strong> file contains the file naming scheme for each file type of each sample. <br> After extracting the compressed files from the original <strong>.tar.bz2 </strong>formats, the filename may change. Please refer to the table in case there is any problems identifying the files. Further Information For further information on the methods used in this work, please check our related research paper at: <strong>TBA</strong> <br>
DOI: 10.5281/zenodo.7330986
title: UTS Digital Forensic, Computer-Assisted

description: data uts digital forensic computer-assisted
DOI: 10.5281/zenodo.7330985
title: UTS Digital Forensic, Computer-Assisted

description: data uts digital forensic computer-assisted
DOI: 10.14278/rodare.1952
title: Data publication: Variability of radionuclide sorption efficiency on muscovite cleavage planes

description: Dataset of outputs produced by DFT and KMC simulation described in the associated paper. KMC data: Adsorption distribution (Ad_mov_01.pdb to Ad_mov_10.pdb) Surface nanotopography (surface_1.pdb) Statistic files for dissolution and adsorption (Ad_num.txt, Ad_Sites_Stat.txt, sites_stat_1.txt, diss_num.txt) Input files (testmusc9_KMC_Mica_1_6.inp, EuAdsorption_2_0.inp) Excel files for adsorption evaluation (Adsorption_Results_File), input energy calculation (EnergyParameterCalc) and site sorting (Site-INDL-Sorting) DFT data: Excel file adsorption energy barriers (Adsorption_Energy_Barrier) Site adsorption energies (.cvs files) Site adsorption trajectories (.xyz files) Excel file for the estimation of the desorption factor
DOI: 10.14278/rodare.1953
title: Data publication: Variability of radionuclide sorption efficiency on muscovite cleavage planes

description: Dataset of outputs produced by DFT and KMC simulation described in the associated paper. KMC data: Adsorption distribution (Ad_mov_01.pdb to Ad_mov_10.pdb) Surface nanotopography (surface_1.pdb) Statistic files for dissolution and adsorption (Ad_num.txt, Ad_Sites_Stat.txt, sites_stat_1.txt, diss_num.txt) Input files (testmusc9_KMC_Mica_1_6.inp, EuAdsorption_2_0.inp) Excel files for adsorption evaluation (Adsorption_Results_File), input energy calculation (EnergyParameterCalc) and site sorting (Site-INDL-Sorting) DFT data: Excel file adsorption energy barriers (Adsorption_Energy_Barrier) Site adsorption energies (.cvs files) Site adsorption trajectories (.xyz files) Excel file for the estimation of the desorption factor
DOI: 10.6084/m9.figshare.21572445
title: wudang_v10.rar

description: This data set contains chemical composition of NR-PM1 and particle number size distribution measured on Mt. Wudang in Central China during summer 2018 (May 29-June 29) , along with concentrations of some trace gases and meterolocial variables. The data format is self-consistent and explained.
DOI: 10.6084/m9.figshare.21432807
title: COVID-19 and diabetes

description: Supplementary materials
DOI: 10.6084/m9.figshare.21432807.v4
title: COVID-19 and diabetes

description: Supplementary materials
DOI: 10.6084/m9.figshare.21432807.v3
title: COVID-19 and diabetes

description: Supplementary materials
DOI: 10.25625/ckjxtw/e0i7tt
title: 2022-11-16v_EFForTS-BEE_species_recruited_trees_2018.tab

description: List of species found across all plots
DOI: 10.25625/ckjxtw/hjevrf
title: 2022-11-16v_EFForTS-BEE_recruited_trees_2018.tab

description: Inventory of all recruited woody individuals
DOI: 10.5281/zenodo.6468185
title: Reis and others., 2022 - Supplementary Material - JGR Atmospheres

description: Dust geochemical results explored in the manuscript submitted to the journal JGR - Atmospheres; Please contact the authors for any scientific purposes: sdosreis.rafael@gmail.com
DOI: 10.17028/rd.lboro.21572439
title: Supplementary information files for Stacking-mediated diffusion of ruthenium nanoclusters in bilayer graphene and graphite

description: Supplementary files for article Stacking-mediated diffusion of ruthenium nanoclusters in bilayer graphene and graphite <br> The diffusion, penetration and intercalation of metallic atomic dopants is an important question for various graphite applications in engineering and nanotechnology. We have performed systematic first-principles calculations of the behaviour of ruthenium nanoclusters on a graphene monolayer and intercalated into a bilayer. Our computational results show that at a sufficiently high density of single Ru atom interstitials, intercalated atoms can shear the surrounding lattice to an AA stacking configuration, an effect which weakens with increasing cluster size. Moreover, the interlayer stacking configuration, in turn, has a significant effect on cluster diffusion. We therefore find different trends in diffusivity as a function of cluster size and interlayer stacking. For monolayer graphene and an AA graphene bilayer, the formation of small clusters generally lowers diffusion barriers, while the opposite behaviour is found for the preferred AB stacking configuration. These results demonstrate that conditions of local impurity concentration and interlayer disregistry are able to regulate the diffusivity of metallic impurities in graphite.
DOI: 10.17028/rd.lboro.21572439.v1
title: Supplementary information files for Stacking-mediated diffusion of ruthenium nanoclusters in bilayer graphene and graphite

description: Supplementary files for article Stacking-mediated diffusion of ruthenium nanoclusters in bilayer graphene and graphite <br> The diffusion, penetration and intercalation of metallic atomic dopants is an important question for various graphite applications in engineering and nanotechnology. We have performed systematic first-principles calculations of the behaviour of ruthenium nanoclusters on a graphene monolayer and intercalated into a bilayer. Our computational results show that at a sufficiently high density of single Ru atom interstitials, intercalated atoms can shear the surrounding lattice to an AA stacking configuration, an effect which weakens with increasing cluster size. Moreover, the interlayer stacking configuration, in turn, has a significant effect on cluster diffusion. We therefore find different trends in diffusivity as a function of cluster size and interlayer stacking. For monolayer graphene and an AA graphene bilayer, the formation of small clusters generally lowers diffusion barriers, while the opposite behaviour is found for the preferred AB stacking configuration. These results demonstrate that conditions of local impurity concentration and interlayer disregistry are able to regulate the diffusivity of metallic impurities in graphite.
DOI: 10.6084/m9.figshare.21397158.v5
title: South African LNCS papers 1973-2020

description: This study investigated the research participation of South African (RSA) authors in LNCS for the period 1973 to 2020.
DOI: 10.5281/zenodo.7331039
title: Influence of Yokukansan on refractive index of neuroblastoma cells - dataset

description: This dataset contains 3 sets with files connected to holographic tomography (HT), fluorescence microscopy (FM) and Raman micro-spectroscopy (RmS) measurements. All measurements are from experiment on SH-SY5Y neuroblastoma cells with treatement of diferent doses of Yokukansan (YKS - Chinses herbal medicine herb). Measurements were carried out in Nencki Institute of Experimental Biology and University of Warsaw. <strong>For HT:</strong><br> All files are *.mat files HT_3D_RI - in the file there are values of RI of cells (named in order: "RI3D_DoseTime" for ex. "RI3D_1mg25h") <br> HT_LD_volumes - in the file, there are values of LD volumes and whole cell volumes for cells (named in order: "LD_DoseTime" for ex. "LD_1mg25h") <strong>For FM:</strong><br> File is an *.xlsx In the file there is a spreadsheet with data of mean intensity of Hoechst staining signal in cells measured with FM. <br> There are results from 3 repetition of the experiment (Day 1, 2, 3). In one experiment there were measurements of 8 doses (0,5, 1, 2, 4, 5, 6, 7, 8, mg/ml) in 4 time points (after 24h, 48h, 72h, 6 days). There is also control measurement values for each day. <br> <strong>For RmS:</strong><br> There are three *.npy files and one *.txt *.npy files containing the raw hyperspectral cube of the SH-SY5Y neuroblastoma cells in the form of the numpy three-dimensional array (named in order: "RmS_DoseTime" for ex. "RmS_4mg24h"). Two first dimensions correspond to the spatial position of the recorded spectra and the last one contains intensities for the Raman shift range. The measurement was performed with spatial resolution of 0.5 µm. Information about the Raman shift values for which the spectra were recorded can be found in the Raman_shift_values.txt file. Code example:<br> import numpy as np<br> hypespectral_cube = np.load('control.npy') # Loading the data<br> R_shifts = np.loadtxt('Raman_shift_values.txt') # vector of Raman shifts<br> single_spectrum = hypespectral_cube[x,y,:] # gives Raman intensity recorded at x*0.5 µm, y*0.5 µm position. <br> intensity_map = hypespectral_cube[:,:,Rshift_index] # gives the intensity image for the specific Raman shift value defined by R_shifts[Rshift_index]
DOI: 10.5281/zenodo.7331040
title: Influence of Yokukansan on refractive index of neuroblastoma cells - dataset

description: This dataset contains 3 sets with files connected to holographic tomography (HT), fluorescence microscopy (FM) and Raman micro-spectroscopy (RmS) measurements. All measurements are from experiment on SH-SY5Y neuroblastoma cells with treatement of diferent doses of Yokukansan (YKS - Chinses herbal medicine herb). Measurements were carried out in Nencki Institute of Experimental Biology and University of Warsaw. <strong>For HT:</strong><br> All files are *.mat files HT_3D_RI - in the file there are values of RI of cells (named in order: "RI3D_DoseTime" for ex. "RI3D_1mg25h") <br> HT_LD_volumes - in the file, there are values of LD volumes and whole cell volumes for cells (named in order: "LD_DoseTime" for ex. "LD_1mg25h") <strong>For FM:</strong><br> File is an *.xlsx In the file there is a spreadsheet with data of mean intensity of Hoechst staining signal in cells measured with FM. <br> There are results from 3 repetition of the experiment (Day 1, 2, 3). In one experiment there were measurements of 8 doses (0,5, 1, 2, 4, 5, 6, 7, 8, mg/ml) in 4 time points (after 24h, 48h, 72h, 6 days). There is also control measurement values for each day. <br> <strong>For RmS:</strong><br> There are three *.npy files and one *.txt *.npy files containing the raw hyperspectral cube of the SH-SY5Y neuroblastoma cells in the form of the numpy three-dimensional array (named in order: "RmS_DoseTime" for ex. "RmS_4mg24h"). Two first dimensions correspond to the spatial position of the recorded spectra and the last one contains intensities for the Raman shift range. The measurement was performed with spatial resolution of 0.5 µm. Information about the Raman shift values for which the spectra were recorded can be found in the Raman_shift_values.txt file. Code example:<br> import numpy as np<br> hypespectral_cube = np.load('control.npy') # Loading the data<br> R_shifts = np.loadtxt('Raman_shift_values.txt') # vector of Raman shifts<br> single_spectrum = hypespectral_cube[x,y,:] # gives Raman intensity recorded at x*0.5 µm, y*0.5 µm position. <br> intensity_map = hypespectral_cube[:,:,Rshift_index] # gives the intensity image for the specific Raman shift value defined by R_shifts[Rshift_index]
DOI: 10.6084/m9.figshare.8813564
title: Data for Siracusa et al. 2021 Current Biology - "Familiar neighbours, but not relatives, enhance fitness in a territorial mammal"

description: Data for reviewers to recreate analyses found in Siracusa et al. 2021 Current Biology - "Familiar neighbours, but not relatives, enhance fitness in a territorial mammal".
DOI: 10.6084/m9.figshare.8813564.v1
title: Data for Siracusa et al. - "Familiar neighbours, but not relatives, enhance fitness in a territorial mammal"

description: Data for reviewers to recreate analyses found in Siracusa et al. - "Familiar neighbours, but not relatives, enhance fitness in a territorial mammal".
DOI: 10.6084/m9.figshare.8813564.v2
title: Data for Siracusa et al. 2021 Current Biology - "Familiar neighbours, but not relatives, enhance fitness in a territorial mammal"

description: Data for reviewers to recreate analyses found in Siracusa et al. 2021 Current Biology - "Familiar neighbours, but not relatives, enhance fitness in a territorial mammal".
DOI: 10.6084/m9.figshare.21572559
title: Supplementary Material.docx

description: WTP in Wuhan
DOI: 10.6084/m9.figshare.21572559.v1
title: Supplementary Material.docx

description: WTP in Wuhan
DOI: 10.3886/e182944
title: El Tai Chi como propuesta de ejercicios terapéuticos adecuados a la psico-profilaxis en la ginecobstetricia.

description: El estudio está diseñado para aumentar la calidad de vida de las gestantes y la comprensión de los profesionales de la salud y las familias sobre la importancia de la integración de los ejercicios terapéuticos tradicionales (Tai Chi. Chi Kung) en el período de gestación ya corto plazo el bienestar de los futuros bebes. Realizando un programa de actividades tanto terapéuticas como profilácticas sustentadas en la cultura asiática y sus saberes dentro de la esfera de la medicina tradicional.Se utiliza un enfoque cualitativo en el procedimiento metodológico de análisis de contenido, que permite construir toda la composición del estudio. El procedimiento de observación concedió cualitativa y cuantitativamente los resultados finales, los cuales arrojaron una mejora en el estado físico de la postura mejorando su respiración y control de estrés, en lo mental y emocional se ve un aumento de actitud positiva antes de su tiempo de embarazo presentando una convivencia positiva. Siendo esto de un 90% de efectividad.<br>
DOI: 10.3886/e182944v1
title: Revista Pensar y crecer

description: La REVISTA CIENTÍFICA PENSAR Y CRECER es una publicación bimestral de trabajos inéditos, que no han sido publicados en medios impresos o electrónicos, relacionados con deporte, salud, fisioterapia, y educación, o que presentan resultados de estudios e investigaciones sobre actividades del sector de información en ciencia, tecnologia e innovacion. La actividad del sector de información engloba componentes de varios sectores y subsectores, como educación, cultura, investigación, en sus aspectos relacionados con la información científica y tecnológica.
DOI: 10.5281/zenodo.7318769
title: DFT optimised structures of Ru(II)-based photocatalysts

description: DFT optimised xyz structures of a series of [(N,N)<sub>2</sub>Ru(tpphz)RhCp<sup>*</sup>Cl]<sup>n+/-</sup> complexes, where the (N,N) ligand is varied ((N,N)= tbbpy, prbim, prbimOMe2, dmabim, bim). The optimised geometries of the singlet electronic ground state (S0), the triplet metal-to-ligand charge transfer (3MLCT) to the bridging ligand and the triplet metal centred state on the Ru centre (3MC) are provided, as well as the linear interpolated geometries connecting the 3MLCT and 3MC states.