cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3992724
title: Replication package with data used in the study: "The effect of code smells on the relationship between design patterns and defects. An empirical study"

description: This is a replication package with data used in a study by T. Alkhaeir and B. Walter "The effect of code smells on the relationship between design patterns and defects. An empirical study" This dataset contains the following folders: "Analyzed systems" folder: For each subject system (Ant-1.7, JEdit-4.2, Lucene-2.4, Camel-1.6, Log4j-1.2, Xalan-2.7, Poi-3.0, Ivy-2.0, Xerces-2.0, Velocity-1.6), we identify the following datasets: SDP, nSDP, SnDP, and nSnDP. Each dataset is represented by a separate csv file. Those csv files include raw data about every class in every release. Each file includes columns which represent: System: The analyzed system className: A fully qualified class name Pattern: if the class is part of any pattern the cell contains the name of the pattern, and “null” otherwise Smell: if the class is part of affected by any smell the cell contains the name of the smell, and “null” otherwise Bugs: Number of defects reported inside the class (extracted from the PROMISE dataset) A "detailed analysis" folder: For each pattern, we report all the classes which participate in it in all the analyzed systems. The csv files inside this folder follow the same structure as the other csv files reported above <br>
DOI: 10.5281/zenodo.3673053
title: Data from a three-phase Delphi study used to investigate Knowledge Infrastructure for Research Data in Norway, KIRDN_Data; PhD project

description: A modified three-phase Delphi study was used to explore the knowledge infrastructure for research data in Norway. The study includes different stakeholders involved in research data sharing. A Delphi study is characterised by the use of an expert panel to elicit opinions on a shared reality from different perspectives. Data collection is performed in several rounds with the intention of reaching consensus or solving an issue. A group of 24 experts took part in the study. The group consisted of policy-makers, representatives of national service providers, and researchers and research support staff from four Norwegian universities. The participants were invited based on their involvement in the development of policies, infrastructure or data-related research support. The research support staff were recruited to include representatives from different research support services at the universities, including libraries, research offices and IT departments. While the researchers were selected from based on their receival of EU funding with requirements of data management plans. Data were collected in three phases. The first phase, the ‘exploration phase’, was conducted using open interviews lasting approximately one hour in January/February 2018. The purpose of this phase was to obtain an initial overview of the panel members opinions’ on issues regarding research data management. In the second phase, the ‘evaluation phase’, conducted in August/September 2018, participants answered a survey containing nine questions on topics such as data stewardship, DMPs, ethical aspects of data sharing and core functions in a research data infrastructure. The survey was designed to further explore issues and tensions uncovered in the first interviews. Several of the questions were formulated as statements that the participants were asked to agree or disagree upon. The third, ‘concluding phase’ was conducted using interviews in March/April 2019. These interviews lasted approximately 30 minutes and were based on results from the questionnaire as well as the first interview. Participants were asked whether they had thoughts on the preliminary findings of the study. Based on requests from some of the participants, the questions were sent to all participants prior to the data collection, in all three phases. The participants were also sent the transcripts from the interviews and were asked for permission to share the complete material or parts of the data material to which they contributed.
DOI: 10.5281/zenodo.3992750
title: Orthodontic treatment of teeth with pathological tooth flaring, drifting, and elongation in patients with very severe periodontitis: a systematic review with meta-analysis

description: Datasets for all analyses
DOI: 10.5281/zenodo.3992749
title: Orthodontic treatment of teeth with pathological tooth flaring, drifting, and elongation in patients with very severe periodontitis: a systematic review with meta-analysis

description: Datasets for all analyses
DOI: 10.5517/ccdc.csd.cc11c60m
title: CCDC 964069: Experimental Crystal Structure Determination

description: Related Article: Lulu Wu, Kaihong Chen, You Huang, Er‐Qing Li|2020|Asian J.Org.Chem|9|1179|doi:10.1002/ajoc.202000246
DOI: 10.5517/ccdc.csd.cc1zr1sk
title: CCDC 1839409: Experimental Crystal Structure Determination

description: Related Article: Huamin Wang, Xiuzheng Li, Youshao Tu, Junliang Zhang|2020|iScience|23|101138|doi:10.1016/j.isci.2020.101138
DOI: 10.5517/ccdc.csd.cc20f8b2
title: CCDC 1859793: Experimental Crystal Structure Determination

description: Related Article: Maria Charalambous, Eleni E. Moushi, Tu N. Nguyen, Constantina Papatriantafyllopoulou, Vassilios Nastopoulos, George Christou, Anastasios J. Tasiopoulos|2019|Frontiers in Chemistry|7|96|doi:10.3389/fchem.2019.00096
DOI: 10.5517/ccdc.csd.cc20f8xn
title: CCDC 1859811: Experimental Crystal Structure Determination

description: Related Article: Maria Charalambous, Eleni E. Moushi, Tu N. Nguyen, Constantina Papatriantafyllopoulou, Vassilios Nastopoulos, George Christou, Anastasios J. Tasiopoulos|2019|Frontiers in Chemistry|7|96|doi:10.3389/fchem.2019.00096
DOI: 10.5517/ccdc.csd.cc20f90s
title: CCDC 1859814: Experimental Crystal Structure Determination

description: Related Article: Maria Charalambous, Eleni E. Moushi, Tu N. Nguyen, Constantina Papatriantafyllopoulou, Vassilios Nastopoulos, George Christou, Anastasios J. Tasiopoulos|2019|Frontiers in Chemistry|7|96|doi:10.3389/fchem.2019.00096
DOI: 10.5517/ccdc.csd.cc20pm1d
title: CCDC 1867813: Experimental Crystal Structure Determination

description: Related Article: Adibah Izzati Daud, Wan M. Khairul, Elccey Augustine, Suhana Arshad, Ibrahim Abdul Razak|2019|J.Mol.Struct.|1194|124|doi:10.1016/j.molstruc.2019.05.046
description: Related Article: Wan M. Khairul, Adibah Izzati Daud, Elccey Augustine, Suhana Arshad, Ibrahim Abdul Razak|2020|Chem. Data Collect.|28|100473|doi:10.1016/j.cdc.2020.100473
DOI: 10.5517/ccdc.csd.cc20y123
title: CCDC 1874944: Experimental Crystal Structure Determination

description: Related Article: Emile Roussel, Alexis Moréno, Nicolas Altounian, Christian Philouze, Basile Pérès, Aline Thomas, Olivier Renaudet, Pierre Falson, Ahcène Boumendjel|2020|Eur.J.Med.Chem.|202|112503|doi:10.1016/j.ejmech.2020.112503
DOI: 10.5517/ccdc.csd.cc20y134
title: CCDC 1874945: Experimental Crystal Structure Determination

description: Related Article: Emile Roussel, Alexis Moréno, Nicolas Altounian, Christian Philouze, Basile Pérès, Aline Thomas, Olivier Renaudet, Pierre Falson, Ahcène Boumendjel|2020|Eur.J.Med.Chem.|202|112503|doi:10.1016/j.ejmech.2020.112503
DOI: 10.5517/ccdc.csd.cc23jj7f
title: CCDC 1952294: Experimental Crystal Structure Determination

description: Related Article: Nan Luo, Zhenzhen Zhan, Zihui Ban, Guoqiang Lu, Jianping He, Fangpeng Hu, Guosheng Huang|2020|Adv.Synth.Catal.|362|3126|doi:10.1002/adsc.202000567
DOI: 10.5517/ccdc.csd.cc23km4g
title: CCDC 1953345: Experimental Crystal Structure Determination

description: Related Article: Matthew Fritz, Jodi Kraus, Caitlin M. Quinn, Glenn P. A. Yap, Jochem Struppe, Ivan V. Sergeyev, Angela M. Gronenborn, and Tatyana Polenova|2019|J.Phys.Chem.B|123|10680|doi:10.1021/acs.jpcb.9b08919
DOI: 10.5517/ccdc.csd.cc23ktl3
title: CCDC 1953545: Experimental Crystal Structure Determination

description: Related Article: Matthew Fritz, Jodi Kraus, Caitlin M. Quinn, Glenn P. A. Yap, Jochem Struppe, Ivan V. Sergeyev, Angela M. Gronenborn, and Tatyana Polenova|2019|J.Phys.Chem.B|123|10680|doi:10.1021/acs.jpcb.9b08919
DOI: 10.5517/ccdc.csd.cc23xxyx
title: CCDC 1964220: Experimental Crystal Structure Determination

description: Related Article: Xiaohui Li, Ying Wang, Fen Li, Xin Zhang|2020|Dyes Pigm.|182|108474|doi:10.1016/j.dyepig.2020.108474
DOI: 10.5517/ccdc.csd.cc249gsq
title: CCDC 1975313: Experimental Crystal Structure Determination

description: Related Article: Ahmet Oral Sarıoğlu, Şerife Pınar Yalçın, Ümit Ceylan, Muhittin Aygün, Hilal Kırpık, Mehmet Sönmez|2020|J.Lumin.|227|117537|doi:10.1016/j.jlumin.2020.117537
DOI: 10.5517/ccdc.csd.cc24bg10
title: CCDC 1976251: Experimental Crystal Structure Determination

description: Related Article: Alexey V. Kletskov, Nikolay A. Bumagin, Sergey K. Petkevich, Evgenij A. Dikusar, Alexander S. Lyakhov, Ludmila S. Ivashkevich, Iryna A. Kolesnik, Vladimir I. Potkin|2020|Inorg.Chem.|59|10384|doi:10.1021/acs.inorgchem.0c01035
DOI: 10.5517/ccdc.csd.cc24bg21
title: CCDC 1976252: Experimental Crystal Structure Determination

description: Related Article: Alexey V. Kletskov, Nikolay A. Bumagin, Sergey K. Petkevich, Evgenij A. Dikusar, Alexander S. Lyakhov, Ludmila S. Ivashkevich, Iryna A. Kolesnik, Vladimir I. Potkin|2020|Inorg.Chem.|59|10384|doi:10.1021/acs.inorgchem.0c01035
DOI: 10.5517/ccdc.csd.cc24d43t
title: CCDC 1977865: Experimental Crystal Structure Determination

description: Related Article: Xiaohui Li, Ying Wang, Fen Li, Xin Zhang|2020|Dyes Pigm.|182|108474|doi:10.1016/j.dyepig.2020.108474
DOI: 10.5517/ccdc.csd.cc24pkdt
title: CCDC 1986926: Experimental Crystal Structure Determination

description: Related Article: Tanisha Sachdeva, Marilyn Daisy Milton|2020|Dyes Pigm.|181|108539|doi:10.1016/j.dyepig.2020.108539
DOI: 10.5281/zenodo.3992631
title: Data of seismic urban noise in the city of Hamburg, Germany 2018

description: Use is free for scientific purposes, provided the aforementioned reference is appropriately cited. The dataset contains raw seismic data in mini-seed format which was used in the publication: doi will follow soon. The zip-file contains the raw data of three broadband stations and their inventories as xml-files. The recording time ranges from 2018-01-01 until 2018-04-19. The data presented here is partly funded through the German Research Foundation (DFG) under Germany‘s Excellence Strategy – EXC 2037 'CLICCS - Climate, Climatic Change, and Society' – Project Number: 390683824, and the Cluster of Excellence 'CliSAP' (EXC177), contribution to the Center for Earth System Research and Sustainability (CEN) of Universität Hamburg.
DOI: 10.5281/zenodo.3992630
title: Data of seismic urban noise in the city of Hamburg, Germany 2018

description: Use is free for scientific purposes, provided the aforementioned reference is appropriately cited. The dataset contains raw seismic data in mini-seed format which was used in the publication: doi will follow soon. The zip-file contains the raw data of three broadband stations and their inventories as xml-files. The recording time ranges from 2018-01-01 until 2018-04-19. The data presented here is partly funded through the German Research Foundation (DFG) under Germany‘s Excellence Strategy – EXC 2037 'CLICCS - Climate, Climatic Change, and Society' – Project Number: 390683824, and the Cluster of Excellence 'CliSAP' (EXC177), contribution to the Center for Earth System Research and Sustainability (CEN) of Universität Hamburg.
DOI: 10.5281/zenodo.3992790
title: Test data for metagenome-atlas

description: Two simulated metagenome samples which could generate some MAGs
DOI: 10.5281/zenodo.3992789
title: Test data for metagenome-atlas

description: Two simulated metagenome samples which could generate some MAGs
DOI: 10.5281/zenodo.3992802
title: On the Combined Role of Cosmic Rays andSupernova-Driven Turbulence for Galactic Dynamos

description: "b_data_cr.h5" contains the data from the model CR
DOI: 10.5281/zenodo.3992801
title: On the Combined Role of Cosmic Rays andSupernova-Driven Turbulence for Galactic Dynamos

description: "b_data_cr.h5" contains the data from the model CR
DOI: 10.34777/03zq-aw52
title: Cursive Character Challenge (CCC)

description: Cursive Character Challenge (C-Cube) is used as benchmark for machine learning and pattern recognition algorithms. The database contains 57293 cursive 	characters manually extracted from cursive words, including both upper and lower case versions of each letter.
DOI: 10.5281/zenodo.3992819
title: Codes and datasets associated with the paper "On the dissipation rate of temperature fluctuations in stably stratified flows"

description: Here, you will find some of the codes and datasets utilized in the article: "On the dissipation rate of temperature fluctuations in stably stratified flows". (https://arxiv.org/abs/2001.06369) The direct numerical simulations were performed using the HERCULES code (https://github.com/friedenhe/HERCULES). For all the simulations, the bulk Reynolds number is kept at 20,000. The bulk Richardson number is varied from 0.1 to 0.5. The zip files Re20000RiXX.zip contains the various turbulence statistics. Re20000Ri10: Ri_b = 0.1 Re20000Ri20: Ri_b = 0.2 Re20000Ri30: Ri_b = 0.3 Re20000Ri40: Ri_b = 0.4 Re20000Ri50: Ri_b = 0.5 Every dat file (within the zip archives) is in ascii format and has 10 rows and 286 columns. Each row corresponds to normalized time (ranging from 1 to 10). Each column represents vertical model levels.
DOI: 10.5281/zenodo.3992818
title: Codes and datasets associated with the paper "On the dissipation rate of temperature fluctuations in stably stratified flows"

description: Here, you will find some of the codes and datasets utilized in the article: "On the dissipation rate of temperature fluctuations in stably stratified flows". (https://arxiv.org/abs/2001.06369) The direct numerical simulations were performed using the HERCULES code (https://github.com/friedenhe/HERCULES). For all the simulations, the bulk Reynolds number is kept at 20,000. The bulk Richardson number is varied from 0.1 to 0.5. The zip files Re20000RiXX.zip contains the various turbulence statistics. Re20000Ri10: Ri_b = 0.1 Re20000Ri20: Ri_b = 0.2 Re20000Ri30: Ri_b = 0.3 Re20000Ri40: Ri_b = 0.4 Re20000Ri50: Ri_b = 0.5 Every dat file (within the zip archives) is in ascii format and has 10 rows and 286 columns. Each row corresponds to normalized time (ranging from 1 to 10). Each column represents vertical model levels.
DOI: 10.4119/unibi/2687140
title: Interdisziplinäre Arbeitsgruppe „Zukunft des wissenschaftlichen Kommunikationssystems der BBAW“ 2014: Online-Konsultation „Publikationssystem“, 18.03.2014-17.04.2014
DOI: 10.25919/5f3e6c0f766c4
title: Parkes observations for project P1041 semester 2020APRS_14

description: We recently discovered five millisecond pulsars (MSPs) in the globular cluster Omega Centauri. This is the first pulsar discovery in this globular cluster. Four of these pulsars are isolated with spin periods of 4.1, 4.2, 4.6 and 6.8ms. The fifth has a spin period of 4.8ms and is in an eclipsing binary system with an orbital period of 2.1 hours. We propose to carry out a timing campaign of these new pulsars in order to study the dynamics in the core of Omega Centauri, to reveal the origin of Gamma-ray emission from the core, and to probe the ionised interstellar medium in Omega Centauri. Our proposed observations will also enable us to carry out deeper searches of pulsars in the cluster.
DOI: 10.5517/ccdc.csd.cc24pm2k
title: CCDC 1986978: Experimental Crystal Structure Determination

description: Related Article: Tanisha Sachdeva, Marilyn Daisy Milton|2020|Dyes Pigm.|181|108539|doi:10.1016/j.dyepig.2020.108539
DOI: 10.5517/ccdc.csd.cc24pq2n
title: CCDC 1987071: Experimental Crystal Structure Determination

description: Related Article: Antonio A. García-Valdivia, Amalia García-García, Fatin Jannus, Andoni Zabala-Lekuona, José M. Méndez-Arriaga, Belén Fernández, Marta Medina-O'donnell, Gloria B. Ramírez-Rodríguez, José M. Delgado-López, Luisa M. Pastrana-Martínez, Javier Cepeda, José A. Lupiáñez, Fernando J. Reyes-Zurita, Antonio Rodríguez-Diéguez|2020|J.Inorg.Biochem.|208|111098|doi:10.1016/j.jinorgbio.2020.111098
DOI: 10.5517/ccdc.csd.cc24krm3
title: CCDC 1983275: Experimental Crystal Structure Determination

description: Related Article: Lukas Tapmeyer, Michael Bolte, Michele R. Chierotti, Martin U. Schmidt|2020|Dyes Pigm.|181|108442|doi:10.1016/j.dyepig.2020.108442
DOI: 10.5517/ccdc.csd.cc24krl2
title: CCDC 1983274: Experimental Crystal Structure Determination

description: Related Article: Lukas Tapmeyer, Michael Bolte, Michele R. Chierotti, Martin U. Schmidt|2020|Dyes Pigm.|181|108442|doi:10.1016/j.dyepig.2020.108442
DOI: 10.5517/ccdc.csd.cc24sds4
title: CCDC 1989666: Experimental Crystal Structure Determination

description: Related Article: Lukas Tapmeyer, Michael Bolte, Michele R. Chierotti, Martin U. Schmidt|2020|Dyes Pigm.|181|108442|doi:10.1016/j.dyepig.2020.108442
DOI: 10.5517/ccdc.csd.cc23bq39
title: CCDC 1946710: Experimental Crystal Structure Determination

description: Related Article: Jian Zhang, Yang-Yang Chen, Chunhong Tan, Xiao Ma, Xiao-Feng Wang, Guangchuan Ou|2020|CrystEngComm|22|5255|doi:10.1039/D0CE00985G
DOI: 10.5517/ccdc.csd.cc25sy86
title: CCDC 2019968: Experimental Crystal Structure Determination

description: Related Article: Sumana Sengupta, Avijit Banerji|2019|Asian J.Chem.|31|2777|doi:10.14233/ajchem.2019.22232
DOI: 10.5517/ccdc.csd.cc25syzx
title: CCDC 2019990: Experimental Crystal Structure Determination

description: Related Article: Öner Ekici, Zeynep Demircioğlu, Cem Cüneyt Ersanlı, Alaaddin Çukurovalı|2020|J.Mol.Struct.|1204|127513|doi:10.1016/j.molstruc.2019.127513
DOI: 10.5281/zenodo.3992834
title: The Georgaphy of Technology Legitimation - database

description: Dataset created with help discourse network analyser (DNA, Leifeld, P. 2018. Discourse Network Analyser Manual) adapted to the study of the geography of technology legitimation
DOI: 10.5281/zenodo.3530363
title: The Georgaphy of Technology Legitimation - database

description: Dataset created with help discourse network analyser (DNA, Leifeld, P. 2018. Discourse Network Analyser Manual) adapted to the study of the geography of technology legitimation
DOI: 10.25934/00005958.0
title: Available IPD datapackage for study 'Prevention of Thromboembolic Events - European Registry in Venous Thromboembolism (PREFER in VTE)'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00005958.1
title: IPD datapackage for study 'Prevention of Thromboembolic Events - European Registry in Venous Thromboembolism (PREFER in VTE)' and research request: 'INDIVIDUALIZED PREDICTION OF RECURRENCE RISK REDUCTION AND RISK OF BLEEDING WITH EXTENDED ANTICOAGULATION IN PATIENTS WITH VENOUS THROMBOEMBOLISM v2.0'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.5281/zenodo.3958921
title: Generation of stable mammalian cell lines for the expression of proteins related to COVID-19 through random integration

description: Scientists centred around University of Oxford came together in the current COVID-19 pandemic to contribute to relevant studies collaboratively. Researchers with no prior experience in virology studies, myself included, had volunteered our time to contribute whichever way we can based on our field of expertise. The Biotech team of SGC Oxford, headed by Nicola Burgess-Brown had taken up the role of producing proteins used in serological assays, basic research to understand COVID-19 pathophysiology and hunt for treatment compounds. The initial production of these proteins was based on transient transfection of expression construct DNA into mammalian cells. This approach was laborious and consumed large amounts of plasmid DNA. Therefore, I volunteered to generate stable expression cell lines that will negate the constant need for transfection. I aimed to stably integrate the expression constructs into the genome of Expi293F human cells commonly used in large scale protein production. The expression constructs carried neomycin marker for selection in mammalian cells. Toxicity to the cells is not a concern in this case because the expressed proteins are secreted into the medium and do not build up in the cells. The expression constructs are randomly integrated into the genome mainly via non-homologous end-joining (NHEJ). An advantage of this approach is that molecular sub-cloning is not necessary. In order to maximise the rate of correct integration of the expression constructs, restriction digestion was performed to cut once between the expression cassette and antibiotic resistance cassette (refer to cartoon in Figure 1). Without this step, the construct DNA will be broken at a random position during the integration step, potentially disrupting the expression cassette. I have also tested the effect of actively creating double strand breaks (DSBs) in the genome of the cells on the integration efficiency. More DSBs in the genome might increase the incidence of NHEJ and integration of our constructs. This was achieved by co-transfection of AAVS1 CRISPR/eSpCas9(1.1) construct (refer to cartoon in Figure 1). The eSpCas9(1.1)_No_FLAG_AAVS1_T2 construct was a gift from Yannick Doyon (Addgene plasmid # 79888 ; http://n2t.net/addgene:79888 ; RRID:Addgene_79888) Please refer to my SGC opennotebook post for my other research work unrelated to the pandemic. https://openlabnotebooks.org/generation-of-stable-mammalian-cell-lines-for-the-expression-of-proteins-related-to-covid-19-through-random-integration/