cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.xgxd254cq
title: Fine particulate matter and neuroanatomic risk for Alzheimer’s disease in older women

description: Objective: To examine whether late-life exposure to PM2.5 (particulate
 matter with aerodynamic diameters &lt;2.5-µm) contributes to
 progressive brain atrophy predictive of Alzheimer’s disease (AD) using a
 community-dwelling cohort of women (aged 71-89) with up to two brain MRI
 scans (MRI-1: 2005-6; MRI-2: 2010-11). Methods: AD pattern similarity
 (AD-PS) scores, developed by supervised machine learning and validated
 with MRI data from the AD Neuroimaging Initiative, was used to capture
 high-dimensional gray matter atrophy in brain areas vulnerable to AD
 (e.g., amygdala, hippocampus, parahippocampal gyrus, thalamus, inferior
 temporal lobe areas and midbrain). Based on participants’ addresses and
 air monitoring data, we employed a spatiotemporal model to estimate 3-year
 average exposure to PM2.5 preceding MRI-1. General linear models
 were used to examine the association between PM2.5 and AD-PS scores
 (baseline [n=1365] and 5-year standardized change [n=712]), accounting for
 potential confounders and white matter lesion volumes. Results: There was
 no association between PM2.5 and baseline AD-PS score in cross-sectional
 analyses. Longitudinally, each interquartile range increase of PM2.5
 (2.82-µg/m3) was associated with increased AD-PS scores during the
 follow-up, equivalent to a 24% (hazard ratio=1.24; 95% CI: 1.14, 1.34)
 increase in AD risk over 5-years. This association remained after
 adjustment for socio-demographics, intracranial volume, lifestyle,
 clinical characteristics, and white matter lesions, and was present with
 levels below US regulatory standards (&lt;12-µg/m3). Conclusions:
 Late-life exposure to PM2.5 is associated with increased neuroanatomical
 risk of AD, which may not be explained by available indicators of
 cerebrovascular damage.
DOI: 10.5061/dryad.tx95x69td
title: Data from: Climate change-induced migration patterns and extinction risks of Theaceae species in China

description: Theaceae, an economically important angiosperm family, is widely
 distributed in tropical and subtropical forests in Asia. In China,
 Theaceae has particularly high abundances and endemism, comprising ~75% of
 the total genera and ~46% of the total species worldwide. Therefore,
 predicting the response of Theaceae species to climate change is vital. In
 this study, we collected distribution data for 200 wild Theaceae species
 in China, and predicted their distribution patterns under current and
 future climactic conditions by species distribution modeling (SDM). We
 revealed that Theaceae species richness is highest in southeastern China
 and on Hainan Island, reaching its highest value (137 species) in Fujian
 Province. According to the IUCN Red List criteria for assessing species
 threat levels under two dispersal assumptions (no dispersal and full
 dispersal), we evaluated the conservation status of all Theaceae species
 by calculating loss of suitable habitat under future climate scenarios. We
 predicted that nine additional species will become threatened due to
 climate change in the future; one species will be classified as critically
 endangered (CR), two as endangered (EN), and six as vulnerable (VU). Given
 their extinction risks associated with climate change, we recommended that
 these species be added to the Red List. Our investigation of migration
 patterns revealed regional differences in the number of emigrant,
 immigrant, and persistent species, indicating the need for targeted
 conservation strategies. Importantly, regions with high species turnover
 are located on the northern border of the entire Theaceae species
 distribution ranges owing to upwards migration; these regions are
 considered most sensitive to climate change and conservation planning
 should therefore be prioritized here. This study will contribute valuable
 information for reducing the negative impacts of climate change on
 Theaceae species, which will ultimately improve biodiversity conservation
 efficiency
description: We compiled a list of Theaceae species in China according to the
 Flora of China (FOC; http://foc.eflora.cn/) and the Catalogue of Life China 2016 Annual Checklist (http://www.catalogueoflife.org/). We obtained species occurrences data from the National Specimen Information Infrastructure (NSII; http://www.nsii.org.cn/) and the Chinese Virtual Herbarium (CVH; http://www.cvh.ac.cn/).
description: Species distribution records of 200 Theaceae plants in China,
 including species code, species name, longitude and latitude. There are 12
 055 distribution records of wild Theaceae species in China.
DOI: 10.5061/dryad.80gb5mknp
title: Data from: Different processes shape the patterns of divergence in the nuclear and chloroplast genomes of a relict tree species in East Asia

description: Isolation by spatial distance (IBD), environment (IBE), and historical
 climatic stability (IBI) are three common processes assessed in
 phylogeographic and/or landscape genetic studies. However, the relative
 contributions of these three processes with respect to spatial genetic
 patterns have seldom been compared. Moreover, whether the relative
 contribution differ in different regions or when assessed using different
 genetic markers has rarely been reported. Lindera obtusiloba has been
 found to have two sister genetic clades of chloroplast (cpDNA) and nuclear
 microsatellite (nSSR), both of which show discontinuous distribution in
 northern and southern East Asia. In this study, we used the Mantel test
 and multiple matrix regression with randomization (MMRR) to determine the
 relative contributions of IBD, IBE, and IBI with respect to L. obtusiloba
 populations. Independent Mantel tests and MMRR calculations were conducted
 for two genetic data set (cpDNA and nSSR), and for different regions (the
 overall species range, and northern and southern sub-regions of the
 range). We found a significant IBI pattern in nSSRs divergence for all
 assessed regions, whereas no clear IBI pattern was detected with respect
 to cpDNA. In contrast, significant (or marginal) divergent IBD patterns
 were detected for cpDNA in all regions, whereas although a significant IBE
 was apparent with respect to the overall range, the effect was not
 detected in the two sub-regions. The differences identified in nSSR and
 cpDNA population divergence may be related to differences in the heredity
 and ploidy of the markers. Compared with the southern region, the northern
 region showed less significant correlation patterns, which may be related
 to the shorter population history and restricted population range. The
 findings of this study serve to illustrate that comparing between markers
 or regions can contribute to gaining a better understanding the population
 histories of different genomes or within different regions of a species’
 range.
DOI: 10.5061/dryad.47d7wm399
title: Data from: The glue produced by Drosophila melanogaster for pupa adhesion is universal

description: Insects produce a variety of adhesives for diverse functions such as
 locomotion, mating, egg or pupal anchorage to substrates. Although they
 are important for the biology of organisms and potentially represent a
 great resource for developing new materials, insect adhesives have been
 little studied so far. Here, we examined the adhesive properties of the
 larval glue of D. melanogaster. This glue is made of glycosylated proteins
 and allows the animal to adhere to a substrate during metamorphosis. We
 designed an adhesion test to measure the pull-off force required to detach
 a pupa from a substrate and to evaluate the contact area covered by the
 glue. We found that the pupa adheres with similar forces to a variety of
 substrates (with distinct roughness, hydrophilic and charge properties).
 We obtained an average pull-off force of 217 mN, corresponding to 15 500
 times the weight of a pupa and adhesion strength of 137-244 kPa.
 Surprisingly, the pull-off forces did not depend on the contact area. Our
 study paves the way for a genetic dissection of the components of
 Drosophila melanogaster glue that confer its particular adhesive
 properties.
description: <strong>Borne_2020_glue_table_S1.csv</strong> - Table
 S1. Raw dataset of adhesion measurements and measurement
 conditions.
 <strong>glue-adhesion-script.R</strong> - R script
 used to prepare the figures and run the statistical tests.
 <strong>Supplementary_files.pdf</strong> - PDF
 containing other Supplementary Information: 
 Table S2. Contact angle measurements (°) for the different
 substrates. Contact angles were measured for each substrate. All the
 measurements were done before the pull-off force measurements except for
 PLL-PEG-coated glass. Figure S1. Force in function of
 (A) black area, (B) green area and (C) red area. Each dot represents one
 print on glass-type substrates. The grey lines represent the linear
 regressions: (A) r²= 0.01168, y= 257.69 - 46.03x, p=0.144 ; (B) r²=
 -0.009391, y= 218.05 + 13.73x, p=0.7793 ; (C) r²= 0.004791, y= 279.36 -
 19.97x, p= 0.2369; where r² is the adjusted r².
DOI: 10.5061/dryad.02v6wwq0d
title: Too much is bad: increasing numbers of livestock and conspecifics reduce body mass in an avian scavenger

description: Individual traits such as body mass can serve as early warning signals of
 changes in the fitness prospects of animal populations facing
 environmental impacts. Here, taking advantage of a 19-year monitoring, we
 assessed how individual, population and environmental factors modulate
 long-term changes in the body mass of Canarian Egyptian vultures.
 Individual vulture body mass increased when primary productivity was
 highly variable, but decreased in years with a high abundance of
 livestock. We hypothesized that carcasses of wild animals, a natural food
 resource that can be essential for avian scavengers, could be more
 abundant in periods of weather instability but depleted when high
 livestock numbers lead to over-grazing. In addition, increasing vulture
 population numbers also negatively affect body mass suggesting
 density-dependent competition for food. Interestingly, the relative
 strength of individual, population and resource availability factors on
 body mass changed with age and territorial status, a pattern presumably
 shaped by differences in competitive abilities and/or age-dependent
 environmental knowledge and foraging skills. Our study supports that
 individual plastic traits may be extremely reliable tools to better
 understand the response of secondary consumers to current and future
 natural and human-induced environmental changes.
description: Variables obtained during field work 1999-2017  and additional
 variables used in modeling procedures . Additional information is shown in
 the main manuscript. Unpublished data
DOI: 10.5061/dryad.qrfj6q5bw
title: Data from: Multiple late-Pleistocene colonisation events of the Antarctic pearlwort Colobanthus quitensis (Caryophyllaceae) reveal the recent arrival of native Antarctic vascular flora

description: Aim: Antarctica’s remote and extreme terrestrial environments are
 inhabited by only two species of native vascular plants. We assessed
 genetic connectivity amongst Antarctic and South American populations of
 one of these species, Colobanthus quitensis, to determine its origin and
 age in Antarctica.  Location: Maritime Antarctic,
 sub-Antarctic islands, South America Taxon: Antarctic pearlwort
 Colobanthus quitensis (Caryophyllaceae) Methods: Four chloroplast
 markers and one nuclear marker were sequenced from 270 samples from a
 latitudinal transect spanning 21–68° S. Phylogeographic, population
 genetic and molecular dating analyses were used to assess the demographic
 history of C. quitensis and the age of the species in Antarctica.
 Results: Maritime Antarctic populations consisted of two
 different haplotype clusters, occupying the northern and southern Maritime
 Antarctic. Molecular dating analyses suggested C. quitensis to be a young
 (&lt;1 Myr) species, with contemporary population structure derived
 since the late-Pleistocene. Main conclusions: The Maritime
 Antarctic populations likely derived from two independent,
 late-Pleistocene dispersal events. Both clusters shared haplotypes with
 sub-Antarctic South Georgia, suggesting higher connectivity across the
 Southern Ocean than previously thought. The overall findings of multiple
 colonisation events by a vascular plant species to Antarctica, and the
 recent timing of these events, are of significance with respect to future
 colonisations of the Antarctic Peninsula by vascular plants, particularly
 with predicted increases in ice-free land in this area. This study fills a
 significant gap in our knowledge of the age of the contemporary Antarctic
 terrestrial biota. Adding to previous inferences on the other Antarctic
 vascular plant species (the grass Deschampsia antarctica), we suggest that
 both angiosperm species are likely to have arrived on a recent
 (late-Pleistocene) timescale. While most major groups of Antarctic
 terrestrial biota include examples of much longer-term Antarctic
 persistence, the vascular flora stands out as the first identified
 terrestrial group that appears to be of recent origin.
description: The uploaded data files include: 
 the input nex files for Bayesian phylogenetic analyses with
 MrBayes v.3.2. The final tree files are also included.
 the input nex files (with traits) for the haplotype network
 analyses in PopART. input and output files of
 the relative divergence time analyses calculated using STARBEAST 2.5.1
 (method I and II)
DOI: 10.5066/p1nzxuzf
title: Whole-rock geochemical data for volcanic rocks sampled in northwestern Utah and adjacent states

description: This release of whole-rock geochemical data for northwestern Utah and adjacent states is for volcanic rocks sampled and analyzed from 1977 to present. The rocks range from Eocene to Quaternary in age and represent lava flows, tuffs, and subvolcanic intrusions.
The data release includes new, previously unpublished data as well as results for USGS-processed samples that are publicly available through the USGS National Geochemical Database: Rock (NGD-Rock) website. This data release supersedes and improves on the data available for download from the NGD-Rock website by: consolidating all analytical data for a sample from multiple tables into one table, correcting or improving sample locations, correcting typographic errors in sample numbers, updating descriptive information, and adding samples and/or data for samples that are missing from the online NGD-Rock files.
The data are grouped according to the analytical laboratory that processed the samples, since each laboratory used different instruments and analytical methods. Refer to "Child Items" section below to access data and supplemental files. Symbol colors on browse graphic match those used for the browse graphic for each child item.
DOI: 10.5061/dryad.b5mkkwh92
title: Breast cancer patients' language use across four stages

description: The current study reported a language analysis of breast cancer patients’
 posts in an online support group. Adopting web-scrapping techniques, the
 study analyzed 27,078 online posts made by 1,443 users along multiple
 linguistic dimensions to glance into the trajectory of the patients’
 psychosocial adaptation of the disease. The findings suggested that breast
 cancer patients’ emotional experiences and adjustment in the course of
 illness vary from one stage to another. They reached the peak of emotional
 expression, struggle and despair, and self-focus at Stage III, whereas
 wiped out negative emotions and signaled a desire for connections with
 others at Stage IV.
DOI: 10.5281/zenodo.17979728
title: Reconstructed Efficiency Parameters from Superconducting Qubit Relaxation Data

description: This dataset provides operational validation data used as a proof-of-concept example in a study of admissibility constraints for irreversible physical updates. It documents eight independent quantum measurement scan runs performed on IBM Quantum backends Fez and Marrakesh.

The dataset demonstrates independent extraction of energetic cost, informational entropy change, and an effective bandwidth proxy under declared operational definitions. An efficiency parameter is inferred as a diagnostic quantity without fitting, optimization, or interpretive assumptions.

The dataset is provided for reproducibility and methodological transparency. It does not assert universality, cross-domain invariance, or any interpretation of quantum measurement, and it does not depend on any broader theoretical framework.

Version update (interpretive alignment and documentation refinement).

This version supersedes the previous release to align dataset documentation with a newly prepared manuscript on admissibility constraints for irreversible physical updates.

No raw data, scan results, or numerical values have been modified. All CSV files, reconstructed quantities, and checksum hashes remain unchanged.

Changes in this version are limited to:





clarification of interpretive scope (proof-of-concept validation only);




removal of language implying universality or cross-domain invariance;




explicit alignment with an admissibility-constraint framing rather than a framework-specific interpretation;




updated summary and metadata text to support transparent peer review and reproducibility.



This update ensures consistency between the dataset and its use as a validation example in a theory-agnostic admissibility study, without altering any underlying measurements or analysis outputs.
DOI: 10.5061/dryad.95x69p8g5
title: Relative brain size is predicted by the intensity of intrasexual competition in frogs

description: Competition over mates is a powerful force shaping trait evolution. For
 instance, better cognitive abilities may be beneficial in male−male
 competition and thus be selected for by intrasexual selection.
 Alternatively, investment in physical attributes favoring male performance
 in competition for mates may lower the resources available for brain
 development, and more intense male mate competition would coincide with
 smaller brains. To date, only indirect evidence for such relationships
 exists and most studies are heavily biased towards primates and other
 homoeothermic vertebrates. We tested the association between male brain
 size (relative to body size) and male−male competition across N=30 species
 of Chinese anurans. Three indicators of the intensity of male mate
 competition—operational sex ratio (OSR), spawning-site density and male
 forelimb muscle mass—were positively associated with relative brain size,
 whereas the absolute spawning-group size was not. The relationship with
 the OSR and male forelimb muscle mass was stronger for the male than the
 female brains. Taken together, our findings suggest that the increased
 cognitive abilities of larger brains are beneficial in male−male
 competition. This study adds taxonomic breadth to the mounting evidence
 for a prominent role of sexual selection in vertebrate brain evolution.
DOI: 10.5281/zenodo.18394986
title: Reconstructed Efficiency Parameters from Superconducting Qubit Relaxation Data

description: This dataset provides operational validation data used as a proof-of-concept example in a study of admissibility constraints for irreversible physical updates. It documents eight independent quantum measurement scan runs performed on IBM Quantum backends Fez and Marrakesh.

The dataset demonstrates independent extraction of energetic cost, informational entropy change, and an effective bandwidth proxy under declared operational definitions. An efficiency parameter is inferred as a diagnostic quantity without fitting, optimization, or interpretive assumptions.

The dataset is provided for reproducibility and methodological transparency. It does not assert universality, cross-domain invariance, or any interpretation of quantum measurement, and it does not depend on any broader theoretical framework.

Version update (interpretive alignment and documentation refinement).

This version supersedes the previous release to align dataset documentation with a newly prepared manuscript on admissibility constraints for irreversible physical updates.

No raw data, scan results, or numerical values have been modified. All CSV files, reconstructed quantities, and checksum hashes remain unchanged.

Changes in this version are limited to:





clarification of interpretive scope (proof-of-concept validation only);




removal of language implying universality or cross-domain invariance;




explicit alignment with an admissibility-constraint framing rather than a framework-specific interpretation;




updated summary and metadata text to support transparent peer review and reproducibility.



This update ensures consistency between the dataset and its use as a validation example in a theory-agnostic admissibility study, without altering any underlying measurements or analysis outputs.
DOI: 10.15468/dl.scxhkj
title: Occurrence Download

description: A dataset containing 10164 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nemadactylus macropterus",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 10164 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002239-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.