cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3632798_d9.v1
title: Additional file 5: Table S5. of Transcriptome wide analyses reveal a sustained cellular stress response in the gill tissue of Trematomus bernacchii after acclimation to multiple stressors

description: Cell proliferation: This table provides all differentially expressed genes exceeding the confidence threshold (FDR ≤ 0.05) that are associated with the GO Term cell proliferation (GO:0008283) at 7d, 28d and 56d (n = 4). The table includes the gene sequence name from the reference transcriptome, the BLAST result description, the sequence length, the number of BLAST hits to that gene sequence, the minimum e-value of the BLAST hits, the mean similarity, the # of GO terms associated with that sequence, the list of those GO terms, the Enzyme Codes associated with that sequence, InterproScan results associated with that sequence, the log2 adjusted fold change in expression, the log2 counts per million (CPM) of the reads mapped to that sequence, and the p-value and FDR reflecting the confidence in the displayed differential expression of that gene. (XLSX 14 kb)
DOI: 10.17863/cam.59916
title: Research Data Supporting the Paper – Charge and Thermoelectric Transport in Polymer-Sorted Semiconducting Single-Walled Carbon Nanotube Networks

description: Here, we present the data underlying the paper "Charge and Thermoelectric Transport in Polymer-Sorted Semiconducting Single-Walled Carbon Nanotube Networks" published online by ACS Nano on 9 November 2020. For contributions of the authors to the data and experimental details, please refer to the original paper.
DOI: 10.6084/m9.figshare.c.3632801_d8.v1
title: Additional file 12: Table S6. of Germ cell and tumor associated piRNAs in the medaka and Xiphophorus melanoma models

description: Bed file of Xiphophorus piRNA clusters. (BED 1072Â kb)
DOI: 10.6084/m9.figshare.c.3632828_d1.v1
title: Additional file 1: of Nutritional quality and marketing strategies of fast food childrenâ  s combo meals in Guatemala

description: Child-oriented fast food meals in Guatemala. Data on prevalence of child-oriented fast food meals in Guatemala (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3632816_d5.v1
title: Additional file 5: Table S4. of Suboptimal culture conditions induce more deviations in gene expression in male than female bovine blastocysts

description: GO, in terms of the biological process, molecular function, and cellular component, and KEGG pathways of the genes differentially expressed (FDR corrected p-value &lt;0.05, â  FCâ   â Ľ2) in all the comparisons performed. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.c.3632828_d2.v1
title: Additional file 2: of Nutritional quality and marketing strategies of fast food childrenâ  s combo meals in Guatemala

description: Price and nutrition information of child-oriented fast food meals in Guatemala. Data on price and nutrition information of child-oriented fast food meals in Guatemala. (XLSX 53 kb)
DOI: 10.17863/cam.8320
title: Data record for the secondary endpoint analysis of regulatory T cell phenotypes from the "Adaptive study of IL-2 dose on regulatory T cells in Type 1 Diabetes (DILT1D)"

description: Supporting data for the secondary endpoint analysis of regulatory T cell phenotypes from the "Adaptive study of IL-2 dose on regulatory T cells in Type 1 Diabetes (DILT1D)" The study was approved by the Health Research Authority, National Research Ethics Service, UK (13/EE/0020) and is registered at the International Standard Randomised Controlled Trial Number Register (ISRCTN27852285) and at ClinicalTrials.gov (NCT01827735). Data available is the anonymised individual-participant-level results aggregated to appear as: Figure 1, Supplementary Figure 3 and 12 in "Human IL-6RhiTIGIT− CD4+CD127lowCD25+ T cells display potent in vitro suppressive capacity and a distinct Th17 profile" The paper describes the impact of single doses of aldesleukin on 22 participants followed over the course of 2-3 months. While all obvious personal identifiers have been stripped from the individual-participant-level results, in our view it cannot be anonymised sufficiently to be able to put it into the public domain without risk of participant identification. Therefore, it cannot be hosted by the University of Cambridge research repository, but is instead available on application to the DILT1D Data Access Committee, contacted via fw211@cam.ac.uk, and on completion of a Data Access Agreement. The Data Access Committee consists of: the Chief Investigator; the Senior Trial Statistician; and the independent Trial Chair; with additional independent advice from the University of Cambridge School of Clinical Medicine's Information Governance team. Applications will be judged on the following criteria: 1. Has the application been submitted by bona fide researchers? 2. Is the application's purpose in line with the original aims of the trial, and the consents given? 3. Does the application run the risk of producing information that may allow individual trial participants to be identified, or may prejudice the willingness of participants to join future trials?
DOI: 10.6084/m9.figshare.c.3632801_d10.v1
title: Additional file 2: Table S1. of Germ cell and tumor associated piRNAs in the medaka and Xiphophorus melanoma models

description: Sample sequence distribution. The percentage of clean reads, as supplied by BGI, was between 98.73 and 99.67Â % of total read number. On average 89.25Â % of all clean reads were mapped to the genome. The number of sequences with a length between 25 and 32 bases was on average 3x higher in ovary and testis than in somatic tissues. In contrast to this, the proportion of sequences mapping to known miRNAs from mirBase or non-coding RNA annotated as miRNA from the ncrna dataset from Ensembl for Xiphophorus (Xiphophorus_maculatus.Xipmac4.4.2.ncrna.fa) was significantly higher in somatic cells than in germline cells. In oxidized samples a clear reduction of RNAs other than piRNAs could be observed. (XLSX 14Â kb)
DOI: 10.17863/cam.59837
title: Code related to "The experiences of those who support researchers struggling with their mental health" report

description: This code relates to a survey conducted to gather the experiences of those who provide support to researchers who struggle with their mental health. This project was done in collaboration with the open life sciences journal eLife. The survey was created in collaboration with and reviewed by academics and university officials before being released. It received ethical approval from the University of Cambridge Psychology department (2018-19/35), and was created on the Survey Monkey platform. It was open between the 23rd October 2019 and 05th January 2020, but only actively advertised until early December 2019. Recruitment took place through eLife’s social media channels (Twitter, Facebook, LinkedIn); eLife’s newsletters to authors and early career community (voluntary subscriptions); directly emailing corresponding authors who have published with eLife; and by contacting groups of interest and institutions that may be willing to share the survey amongst their networks (e.g. New PI Slack, Mid Career PI Slack, Women in Academia Support Network, SMaRteN, Graduate and Postdoc unions in the US and the UK). Certain tweets advertising the survey were boosted (paid promotion) to reach an academic audience, in particular early-career researchers.
DOI: 10.6084/m9.figshare.c.3632837_d7.v1
title: Additional file 7: Table S7. of Gene and miRNA expression signature of Lewis lung carcinoma LLC1 cells in extracellular matrix enriched microenvironment

description: List of all KEGG Pathways enriched in differently expressed miRNAs in LLC1 cells grown under lr-ECM 3D versus 2D cell culture conditions. (XLS 32Â kb)
DOI: 10.6084/m9.figshare.c.3632882_d1.v1
title: Additional file 1: Table S1. of QuantiFERON conversion following tuberculin administration is common in HIV infectionÂ and relates to baseline response

description: Demographics and data for the 22 participants in study. (XLSX 63 kb)
DOI: 10.6084/m9.figshare.c.3632918_d3.v1
title: Additional file 4: of Intestinal adaptations to a combination of different diets with and without endurance exercise

description: Spreadsheet of data for histology measurements. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3632906_d6.v1
title: Additional file 7: Dataset S1. of Temperature-dependent changes in the host-seeking behaviors of parasitic nematodes

description: Compilation of mean, n, and standard error of the mean (SEM) values for all assays presented in this study. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.c.3632915_d3.v1
title: Additional file 1: Table S1. of Development of a point-of-care-device for fast detection of periodontal pathogens

description: Organisms and cultivation conditions. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3632918_d4.v1
title: Additional file 5: of Intestinal adaptations to a combination of different diets with and without endurance exercise

description: Spreadsheet of data for intestinal wet and dry masses. (XLSX 17Â kb)
DOI: 10.5519/qd.mkz6nhw1
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (185 records)
DOI: 10.6084/m9.figshare.c.3632933_d1.v1
title: Additional file 1: of Smokescreen: a targeted genotyping array for addiction research

description: Smokescreen addiction regions and estimated imputed coverage. This file contains the addiction-related gene regions (chr 1â  22) represented on the Smokescreen array and the estimated imputation-based coverage for each region in European (EUR), Asian (ASN), and African (YRI) populations. (XLSX 338Â kb)
DOI: 10.6084/m9.figshare.c.3632918_d5.v1
title: Additional file 6: of Intestinal adaptations to a combination of different diets with and without endurance exercise

description: Spreadsheet of data for measurements collected at the time of necropsy. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3632918_d6.v1
title: Additional file 2: of Intestinal adaptations to a combination of different diets with and without endurance exercise

description: Spreadsheet of data for intestinal dimenions. (XLSX 18Â kb)
DOI: 10.17863/cam.58231
title: Research data supporting: Noncirculatory Force on a Finite Thickness Body Encountering a Gust

description: The Matlab files include flowfield and force balance data for cylinder gust encounters at nominal gust ratios of 0.5, 1 and 1.5. OpenAccess.Time - in seconds (s) OpenAccess.PositionX - in metres (m), centre position of cylinder OpenAccess.PositionY - in metres (m), centre position of cylinder OpenAccess.Velocity - in m/s, velocity of cylinder OpenAccess.xi - x-location of velocity vectors (m) OpenAccess.yi - y-location of velocity vectors (m) OpenAccess.UField: U-velocity field (m/s) OpenAccess.VField: V-velocity field (m/s) OpenAccess.Lift - lift force experienced by cylinder in Newton
DOI: 10.17863/cam.26396
title: Research data supporting: Development of zero discharge net flow fluid dynamic gauging for studying biofilm and spore removal

description: Data sets associated with the paper published in Food & Bioproducts Processing
DOI: 10.17863/cam.39570
title: Aldborough Roman Coin Lists

description: These full coin catalogues form part of the research archive connected with the Aldborough Roman Town Project and the book Isurium Brigantum: an archaeological survey of Roman Aldborough by Rose Ferraby and Martin Millett. The catalogues were researched and written by Richard Brickstock and relate directly to his publication of the coins from the site: Roman coins from Aldborough: a Re-Assessment and Overview by Richard Brickstock Yorkshire Archaeological Journal Vol 91 (2019) (DOI:10.1080/00844276.2019.1607672) Separate coin lists are provided for different assemblages as follows: List 1. Collections of the Lawson-Tancred family of Aldborough Manor as originally published in Wade, W.V. (1953) ‘Coins from Aldborough, Boroughbridge, Yorkshire – Isurium Brigantum’, Numismatic Chronicle 1953, 132-34 Lists 1A and 1B. Hitherto unpublished additional coins from the Lawson-Tancred collection. The coins in Lists 1, 1A and 1B include the material from the excavations undertaken in the Manor Gardens (Ferraby and Millett Gazetteer nos G8–G11, G19–G23). List 2. The coins found during excavation of the defences of the town in the 1930s (Ferraby and Millett Gazetteer nos G34, G39–43). List 3. Excavation finds from the 1960s (Ferraby and Millett Gazetteer nos G47–G49 and G51–G53). List 4. A collection of coins from Aldborough - The ‘Lodge’ collection, said to have been found at Aldborough. There is no further information on their provenance. They were donated to the Wetherby and District Historical Society in the early 1960s or thereabouts and handed over to Aldborough Museum in 1990 by Dr Lodge, then President of the Society, on their behalf. List 5. A group of nearly three hundred metal-detected finds recovered by local resident Jon Beavis-Harrison and catalogued in 1989. These are all definitely local finds, with many precise locations recorded by the finder. List 6. Coins recovered during field-walking by the Yorkshire Archaeological Society in the 1980s and 1990s. See Dobinson, C, Ferraby, R, Lucas, J, Millett, M and Wallace, L 2018. ‘Archaeological field-survey in the environs of Aldborough (Isurium Brigantum)’, Yorks Archaeol J, 90, 29–58 List 7. A collection of coins recently deposited with English Heritage, 39 of them Roman. The collection is from the estate of the late Roy Pearson, bequeathed by him to the Aldborough Museum (English Heritage) in 1995. He owned Castle House, Back Street in Aldborough (SE 4065 6629) and the land leading back to the town wall and it seems reasonable to assume that the coins are also local finds. List 8. A collection of coins from the garden of Aldborough Dairy (SE 4053 6636) collected by its long-term occupant Aidan Foster. List 9. Coins from the Cambridge University excavations of 2016 and 2017 (Ferraby and Millett Gazetteer nos G104 and G105 respectively) with associated items. The 1770 find is from Ferraby and Millett Gazetteer no G6, whilst SF7 comes from Ferraby and Millett Gazetteer no 50 (‘The Castle’) nearby. List 10. Coins from the Cambridge University excavations of 2018 (Ferraby and Millett Gazetteer no 106).
DOI: 10.6084/m9.figshare.c.3632978_d1.v1
title: Additional file 2: of Maternal smoking impacts key biological pathways in newborns through epigenetic modification in Utero

description: Lancaster_Pat. (XLSX 4 MB)
DOI: 10.6084/m9.figshare.c.3632987_d1.v1
title: Additional file 2: Table S1. of Pateamine A-sensitive ribosome profiling reveals the scope of translation in mouse embryonic stem cells

description: RNA-seq and Riboprofiling data as well as computational scoring for annotated coding sequences and ORFs of noncoding transcripts (Microsoft Excel file). (XLSX 5949Â kb)
DOI: 10.6084/m9.figshare.c.3632978_d2.v1
title: Additional file 1: of Maternal smoking impacts key biological pathways in newborns through epigenetic modification in Utero

description: SKAT_GeneScor. (XLSX 1 MB)
DOI: 10.15468/dl.4sqdpq
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is one of (United States of America, United States Minor Outlying Islands, American Samoa, Micronesia (Federated States of), Guam, Marshall Islands, Northern Mariana Islands, Puerto Rico, Palau, Virgin Islands (U.S.))",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Cambarus eeseeohensis Thoma, 2005)"
 ]
}

 The dataset includes 39 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037882-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.108306
title: Research data supporting "Multi-Variable Multi-Metric Optimization of Self-Assembled Photocatalytic CO2 Reduction Performance using Machine Learning Algorithms"

description: Zip archive containing (i) tabulated photocatalytic test results from heuristic and learning algorithm guided optimization alongside the corresponding chromatograms (instrument output files .gcd and ASCII text export thereof); transient absorption spectra and data fits (ASCII txt); infrared spectra from isotopic labelling experiment (instrument .spa and ASCII text); and machine learning output including training/test sets, raw data for plots, SHAP values and data correlation plot sets (.xlsx and ASCII text).
DOI: 10.17863/cam.110646
title: Research data supporting "Thickness-Dependent Response of Aerosol-Jet-Printed Ultrathin High-Aspect-Ratio Electrochemical Microactuators"

description: This dataset contains AutoCAD files for aerosol jet printing of electrochemical microactuators, profilometry data for determination of layer thicknesses, electrical measurement and angular deflection data from actuation tests, codes to analyse the data, and videos. The angular deflection data are obtained through motion tracking of actuation testing footages in the corresponding video folders. For example, the file "6751.csv" is obtained through motion tracking of the video "MVI_6751.mp4".
DOI: 10.6084/m9.figshare.c.3633047_d1.v1
title: Additional file 4: of Transcriptomes of post-mitotic neurons identify the usage of alternative pathways during adult and embryonic neuronal differentiation

description: List of genes expressed in the nervous system obtained from ZebrafishMine (http://www.zebrafishmine.org/begin.do) and Panther Classification system [ 27 ]. (XLSX 146Â kb)
DOI: 10.17863/cam.87514
title: Research data supporting "Efficient Special Character Entry on a Virtual Keyboard by Hand Gesture-Based Mode Switching"

description: Participant performance and experience data for experiments described in "Efficient Special Character Entry on a Virtual Keyboard by Hand Gesture-Based Mode Switching". The file contains an index page summarising the data contained and a glossary of key terms. There are separate sheets for the performance, interkey interval, workload and survey response data. Please see the original publication for detailed descriptions of the experimental conditions and metrics.
DOI: 10.6084/m9.figshare.c.3633047_d2.v1
title: Additional file 6: of Transcriptomes of post-mitotic neurons identify the usage of alternative pathways during adult and embryonic neuronal differentiation

description: DESeq2 results showing a comparison between labeled mRNA from adult brain and labeled mRNA from embryos with padjâ
DOI: 10.17863/cam.63690
title: Data set associated with 'Effects of Semi-trailer Modifications on HGV Fuel Consumption'

description: This is the data set associated with the journal article titled 'Effects of Semi-trailer Modifications on HGV Fuel Consumption'. The data files are in MATLAB file format. Figure 4 was generated using the vehicle speed profile during a coast-down test conducted at MIRA-HORIBA twin-straight test track at Nuneaton, UK. Figures 5(a) and 5(b) were generated using vehicle speed and acceleration data from a coast-down test. Figure 5(b) was plotted after compensating for the wind speed. Figure 6 was generated using the time and vehicle speed data from a cost-down test. The modelled legend shows the simulated vehicle speed profile with the estimated vehicle parameters, i.e. the estimated coefficients of aerodynamic drag and rolling resistance. Figures 8(a), 8(b), 8(c) and 8(d) were generated using a simulation model with different combinations of the estimated vehicle parameters as mentioned in the legends. They show the fuel consumption benefit as a percentage. Figures 9(a) and 9(b) were generated using a simulation model with different combinations of the estimated vehicle parameters as mentioned in the legends, and they show the absolute fuel economy. All the files were generated using MATLAB software package from Mathworks.
DOI: 10.6084/m9.figshare.c.3633047_d3.v1
title: Additional file 3: of Transcriptomes of post-mitotic neurons identify the usage of alternative pathways during adult and embryonic neuronal differentiation

description: Original Panther analysis tool data tables showing values and p -values for overrepresentation data sets. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3633047_d4.v1
title: Additional file 2: of Transcriptomes of post-mitotic neurons identify the usage of alternative pathways during adult and embryonic neuronal differentiation

description: DESeq2 results showing a comparison between labeled mRNA and total mRNA from adult brain with padjâ
DOI: 10.17863/cam.95106
title: Research data supporting PhD thesis: "Automating Assembly on Construction Sites"

description: Spreadsheet containing the following data tables in separate tabs: 1) Table of construction components with assembly-related properties obtained from off-the-shelf product ranges. 2) Data table summarising evidence of information technology use in five construction project case studies. 3) Table of technologies which could potentially be applied to adapt existing construction plant to provide robotic handling capabilities. 4) Table of typical reach and payload capabilities of suitable construction plant.
DOI: 10.17863/cam.105658
title: Research data supporting "Interchange of Weyl Points in the Phonon Bands of a Half-Metal Alloy"

description: The dataset contains output files (*.check format) from CASTEP calculations of phonons in tetragonally distorted NiMnSb. These files are not human-readable, but we also supply input files (*.cell and *.param format) that would prompt a new CASTEP run to open and make use of the *.check files. The *.cell files, in particular, may be altered to cause CASTEP to output *.phonon files (containing frequencies and eigendisplacements) at any desired wavevector. Further instructions are provided in the README_Data file.
DOI: 10.17863/cam.96645
title: Research Data supporting "Statistical evaluation of the mechanical properties of partially oxygenated YBCO, oxygenated YBCO and oxygenated YBCO(Ag) single grains"

description: This dataset contains supporting information for the journal article “Statistical evaluation of the mechanical properties of partially oxygenated YBCO, oxygenated YBCO and oxygenated YBCO(Ag) single grains”. The file “README.txt” contains detailed information about the data measurement and evaluation. The file “Raw_data.xlsx” contains the raw data used for the plots illustrated in figures 4, 5 and 7. The file “calculation_weibull_modulus.xlsx” explains the calculation of the Weibull modulus. The folders “Figure_4.zip” and “Figure_5.zip” contain the EDX maps and optical tracking microscope images used to gather the data for figures 4 and 5.
DOI: 10.17863/cam.91146
title: Research data supporting "Fabrication of high-quality joints between Gd-Ba-Cu-O bulk superconductors"

description: Data associated with publication of 'Fabrication of high-quality joints between Gd-Ba-Cu-O bulk superconductors.' Each of the files in this dataset is associated with measurement of the magnetic trapped field profile for samples pre and post-jointing. The trapped magnetic field profiles have been measured using a rotating Hall probe array which has 19 Hall probes attached. These have been measured after field cooling to 77 K in a 1.4 T magnetic field. The samples are maintained at 77 K throughout measurement and measurements are taken at zero external magnetic field. Sample labelling: 1=A1, 3=D1, 4=E1, 5=B1, 6=C1, 7=B2, 11=B3, 12=D2 and 13=B4. Sample reference numbers were changed to make the manuscript easier for the reader to follow.
DOI: 10.6084/m9.figshare.c.3633101_d4.v1
title: MOESM6 of What are the effects of agricultural management on soil organic carbon in boreo-temperate systems?

description: Additional file 6. Articles Unobtainable as Full Texts.
DOI: 10.6084/m9.figshare.c.3633101_d5.v1
title: MOESM7 of What are the effects of agricultural management on soil organic carbon in boreo-temperate systems?

description: Additional file 7. Systematic Map Database.
DOI: 10.6084/m9.figshare.c.3633101_d6.v1
title: MOESM5 of What are the effects of agricultural management on soil organic carbon in boreo-temperate systems?

description: Additional file 5. Database of Reviews and Meta-analyses.