cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3659243_d18
title: Additional file 17: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: Position for mutations from S16 SNP alignment. (TXT 2 kb)
DOI: 10.6084/m9.figshare.c.3659243_d22.v1
title: Additional file 24: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: The full results from the cutoff optimization. (TXT 6 kb)
DOI: 10.6084/m9.figshare.c.3659243_d21.v1
title: Additional file 14: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: SNP alignment from the NDtree analysis with contigs from day 1 as reference genome. (FASTA 40 kb)
DOI: 10.6084/m9.figshare.c.3660317_d6
title: Additional file 7: Table S8. of Large-scale transcriptome comparison of sunflower genes responsive to Verticillium dahliae

description: DEGs involved in SVW resistance in genotype-common pattern. (XLSX 53Â kb)
DOI: 10.6084/m9.figshare.c.3660362_d3.v1
title: Additional file 6: of MicroRNA expression patterns in post-natal mouse skeletal muscle development

description: Target analysis of all miRNAs included in cluster A and cluster B. (XLSX 370Â kb)
DOI: 10.6084/m9.figshare.c.3660317_d7.v1
title: Additional file 13: Table S14. of Large-scale transcriptome comparison of sunflower genes responsive to Verticillium dahliae

description: The DEGs were associated with KEGG pathways. (XLSX 93Â kb)
DOI: 10.6084/m9.figshare.c.3660362_d3
title: Additional file 6: of MicroRNA expression patterns in post-natal mouse skeletal muscle development

description: Target analysis of all miRNAs included in cluster A and cluster B. (XLSX 370Â kb)
DOI: 10.6084/m9.figshare.c.3660317_d7
title: Additional file 13: Table S14. of Large-scale transcriptome comparison of sunflower genes responsive to Verticillium dahliae

description: The DEGs were associated with KEGG pathways. (XLSX 93Â kb)
DOI: 10.6084/m9.figshare.c.3660317_d13.v1
title: Additional file 11: Table S12. of Large-scale transcriptome comparison of sunflower genes responsive to Verticillium dahliae

description: The raw data of q-PCR. (XLSX 78Â kb)
DOI: 10.6084/m9.figshare.c.3660359_d5
title: Additional file 3: Figure S2. of Overexpression of PaNAC03, a stress induced NAC gene family transcription factor in Norway spruce leads to reduced flavonol biosynthesis and aberrant embryo development

description: Schematic representation of the PaLAR3A promoter (Genbank accession no. KX574229.1) in black and the PaLAR3B promoter (KX574230.1) in red, the white regions in PaLAR3B promoter corresponds to deletions in the sequence compared to PaLAR3A promoter. The two NAC binding sites (TTTCGT) present in the region unique to the PaLAR3A promoter are indicated in yellow. In the PaLAR3A_mut promoter it is only these two sites which has been mutated in the remainder of the PaLAR3A promoter is intact. (XLSX 69Â kb)
DOI: 10.6084/m9.figshare.c.3660401_d1.v1
title: MOESM1 of treeman: an R package for efficient and intuitive manipulation of phylogenetic trees

description: Additional file 1. Pinning-with-phylo.R.
DOI: 10.6084/m9.figshare.c.3660317_d13
title: Additional file 11: Table S12. of Large-scale transcriptome comparison of sunflower genes responsive to Verticillium dahliae

description: The raw data of q-PCR. (XLSX 78Â kb)
DOI: 10.6084/m9.figshare.c.3660401_d1
title: MOESM1 of treeman: an R package for efficient and intuitive manipulation of phylogenetic trees

description: Additional file 1. Pinning-with-phylo.R.
DOI: 10.6084/m9.figshare.c.3660404_d1.v1
title: Additional file 1: of Construction of a high-density genetic map using specific-locus amplified fragments in sorghum

description: Details of assigned marker sequences. (TXT 1116 kb)
DOI: 10.6084/m9.figshare.c.3660404_d2.v1
title: Additional file 2: of Construction of a high-density genetic map using specific-locus amplified fragments in sorghum

description: Details of F2 individual genotypes. (GENOTYPE 896 kb)
DOI: 10.6084/m9.figshare.c.3660401_d2.v1
title: MOESM2 of treeman: an R package for efficient and intuitive manipulation of phylogenetic trees

description: Additional file 2. Edbmm with-phylo.R.
DOI: 10.6084/m9.figshare.c.3660404_d1
title: Additional file 1: of Construction of a high-density genetic map using specific-locus amplified fragments in sorghum

description: Details of assigned marker sequences. (TXT 1116 kb)
DOI: 10.6084/m9.figshare.c.3660401_d2
title: MOESM2 of treeman: an R package for efficient and intuitive manipulation of phylogenetic trees

description: Additional file 2. Edbmm with-phylo.R.
DOI: 10.6084/m9.figshare.28049957
title: Maianthemum racemosum (seed) raw GC-MS files

description: Metabolite extraction from Maianthemum racemosum seeds
DOI: 10.6084/m9.figshare.28049957.v1
title: Maianthemum racemosum (seed) raw GC-MS files

description: Metabolite extraction from Maianthemum racemosum seeds
DOI: 10.6084/m9.figshare.c.3660404_d2
title: Additional file 2: of Construction of a high-density genetic map using specific-locus amplified fragments in sorghum

description: Details of F2 individual genotypes. (GENOTYPE 896 kb)
DOI: 10.6084/m9.figshare.c.3660386_d6.v1
title: Additional file 4: Table S3. of Shotgun proteomics of the barley seed proteome

description: List of the enriched Gene Ontology terms in the barley seed proteome. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3660386_d6
title: Additional file 4: Table S3. of Shotgun proteomics of the barley seed proteome

description: List of the enriched Gene Ontology terms in the barley seed proteome. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3660428_d2.v1
title: Additional file 3: Table S3. of Complete genome sequence of Lutibacter profundi LP1T isolated from an Arctic deep-sea hydrothermal vent system

description: Proteases of Lutibacter profundi LP1T revealed by MEROPS analyses, different export signals are SP: signal peptid, PorSS: Por_Secre_tail from type IX secretion system. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3660359_d8.v1
title: Additional file 2: of Overexpression of PaNAC03, a stress induced NAC gene family transcription factor in Norway spruce leads to reduced flavonol biosynthesis and aberrant embryo development

description: Scripts used for Nesoni, tophat, cufflinks and cuffdiff. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3660428_d2
title: Additional file 3: Table S3. of Complete genome sequence of Lutibacter profundi LP1T isolated from an Arctic deep-sea hydrothermal vent system

description: Proteases of Lutibacter profundi LP1T revealed by MEROPS analyses, different export signals are SP: signal peptid, PorSS: Por_Secre_tail from type IX secretion system. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3660359_d8
title: Additional file 2: of Overexpression of PaNAC03, a stress induced NAC gene family transcription factor in Norway spruce leads to reduced flavonol biosynthesis and aberrant embryo development

description: Scripts used for Nesoni, tophat, cufflinks and cuffdiff. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3660428_d3.v1
title: Additional file 4: Table S4. of Complete genome sequence of Lutibacter profundi LP1T isolated from an Arctic deep-sea hydrothermal vent system

description: Secretion systems of Lutibacter profundi LP1T. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3660428_d3
title: Additional file 4: Table S4. of Complete genome sequence of Lutibacter profundi LP1T isolated from an Arctic deep-sea hydrothermal vent system

description: Secretion systems of Lutibacter profundi LP1T. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3660428_d4.v1
title: Additional file 2: Table S2. of Complete genome sequence of Lutibacter profundi LP1T isolated from an Arctic deep-sea hydrothermal vent system

description: Glycoside hydrolases of Lutibacter profundi LP1T revealed by dbCAN analyses. different export signals are SP: signal peptid, PorSS: Por_Secre_tail from type IX secretion system. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3660428_d4
title: Additional file 2: Table S2. of Complete genome sequence of Lutibacter profundi LP1T isolated from an Arctic deep-sea hydrothermal vent system

description: Glycoside hydrolases of Lutibacter profundi LP1T revealed by dbCAN analyses. different export signals are SP: signal peptid, PorSS: Por_Secre_tail from type IX secretion system. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3660428_d5.v1
title: Additional file 6: Table S6. of Complete genome sequence of Lutibacter profundi LP1T isolated from an Arctic deep-sea hydrothermal vent system

description: CDS for gliding motility. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3660428_d5
title: Additional file 6: Table S6. of Complete genome sequence of Lutibacter profundi LP1T isolated from an Arctic deep-sea hydrothermal vent system

description: CDS for gliding motility. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.28030544
title: IN SITU LEAF WARMING ON NET PHOTOSYNTHETIC CO2 ASSIMILATION IN <i>THEOBROMA CACAO</i> L. RAW DATA

description: EFFECTS OF IN SITU LEAF WARMING ON NET PHOTOSYNTHETIC CO<sub>2 </sub> ASSIMILATION IN <i>THEOBROMA CACAO </i> L. (cacao): A STUDY IN THE BIOSPHERE 2 TROPICAL RAINFORESTRaw Data Content Descriptionexperiment_DL<i>The contents from the two custom data loggers were collected weekly.</i>The information from thermocouple readings from the three experiment treatment and control leaves and two heating pads for each experiment installation.The information from the custom aspirated temperature/relative humidity/atmospheric pressure sensor installed at each experiment installation.LI-CORRaw LI-COR data from weekly measurements. Excel and text log files are available.Light_CurvesNet photosynthetic CO<sub>2</sub> assimilation rates for a single cacao leaf in the Biosphere 2 tropical rainforest biome. This data was used to determine the light intensity for measurements using the LI-COR sampling device.TC_Calibration2 point calibrations were performed for each thermocouple (TC) used in the heating and control device. The TCs were used to measure heating pad and leaf temperatures.The coefficients were entered into the heating and control device's configuration file to ensure accurate readings for each experiment.
DOI: 10.6084/m9.figshare.c.3660452_d4.v1
title: Additional file 3: of The extracellular proteome of two Bifidobacterium species reveals different adaptation strategies to low iron conditions

description: “PVazquez_etal_additional_file_3”. The file contains the following 2 tables: Table S3a. Genes uniquely found in PV8–2 when compared to all bifidobacteria (sheet 1) and Table S3b. Genes uniquely found in PV8–2 compared to AGR 2145 and DSM20092 (sheet 2). (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3660461_d2.v1
title: Additional file 2: Tables S1-S6. of Modular combinatorial binding among human trans-acting factors reveals direct and indirect factor binding

description: The RMD module matrix and summary for K562, GM12878, and K562 direct versus indirect binding, respectively. (XLS 181Â kb)
DOI: 10.6084/m9.figshare.c.3660467_d1.v1
title: Additional file 1: Table S1. of The effect of induction method in twin pregnancies: a secondary analysis for the twin birth study

description: Adverse maternal or neonatal outcomes by method of induction. (RTF 86 kb)
DOI: 10.6084/m9.figshare.c.3660455_d3.v1
title: MOESM1 of LAMP kit for diagnosis of non-falciparum malaria in Plasmodium ovale infected patients

description: Additional file 1. Raw data of the study comparing turbidimeter and naked eyed readings.
DOI: 10.6084/m9.figshare.c.3660467_d1
title: Additional file 1: Table S1. of The effect of induction method in twin pregnancies: a secondary analysis for the twin birth study

description: Adverse maternal or neonatal outcomes by method of induction. (RTF 86 kb)
DOI: 10.6084/m9.figshare.c.3660461_d2
title: Additional file 2: Tables S1-S6. of Modular combinatorial binding among human trans-acting factors reveals direct and indirect factor binding

description: The RMD module matrix and summary for K562, GM12878, and K562 direct versus indirect binding, respectively. (XLS 181Â kb)
DOI: 10.6084/m9.figshare.c.3660461_d3.v1
title: Additional file 4: Table S8. of Modular combinatorial binding among human trans-acting factors reveals direct and indirect factor binding

description: TF diversification scores and random forest prediction accuracies. (CSV 609 bytes)
DOI: 10.6084/m9.figshare.c.3660452_d4
title: Additional file 3: of The extracellular proteome of two Bifidobacterium species reveals different adaptation strategies to low iron conditions

description: “PVazquez_etal_additional_file_3”. The file contains the following 2 tables: Table S3a. Genes uniquely found in PV8–2 when compared to all bifidobacteria (sheet 1) and Table S3b. Genes uniquely found in PV8–2 compared to AGR 2145 and DSM20092 (sheet 2). (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3660455_d3
title: MOESM1 of LAMP kit for diagnosis of non-falciparum malaria in Plasmodium ovale infected patients

description: Additional file 1. Raw data of the study comparing turbidimeter and naked eyed readings.
DOI: 10.6084/m9.figshare.c.3660467_d2.v1
title: Additional file 2: Table S2. of The effect of induction method in twin pregnancies: a secondary analysis for the twin birth study

description: Maternal and fetal reasons for cesarean section by therapeutic group. (RTF 52 kb)
DOI: 10.6084/m9.figshare.c.3660461_d3
title: Additional file 4: Table S8. of Modular combinatorial binding among human trans-acting factors reveals direct and indirect factor binding

description: TF diversification scores and random forest prediction accuracies. (CSV 609 bytes)
DOI: 10.6084/m9.figshare.c.3660467_d2
title: Additional file 2: Table S2. of The effect of induction method in twin pregnancies: a secondary analysis for the twin birth study

description: Maternal and fetal reasons for cesarean section by therapeutic group. (RTF 52 kb)
DOI: 10.6084/m9.figshare.c.3660461_d4
title: Additional file 3: Table S7. of Modular combinatorial binding among human trans-acting factors reveals direct and indirect factor binding

description: The overlap between RMD modules and published protein-protein interactions. (XLS 25Â kb)
DOI: 10.6084/m9.figshare.c.3660461_d4.v1
title: Additional file 3: Table S7. of Modular combinatorial binding among human trans-acting factors reveals direct and indirect factor binding

description: The overlap between RMD modules and published protein-protein interactions. (XLS 25Â kb)
DOI: 10.6084/m9.figshare.c.3660506_d1.v1
title: Additional file 3: Table S1. of Major Cys protease activities are not essential for senescence in individually darkened Arabidopsis leaves

description: Transcript levels of proteases in non-senescent and senescent leaves. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3660506_d1
title: Additional file 3: Table S1. of Major Cys protease activities are not essential for senescence in individually darkened Arabidopsis leaves

description: Transcript levels of proteases in non-senescent and senescent leaves. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3660509_d1.v1
title: Additional file 1: of Cardiovascular disease risk factors in a Nigerian population with impaired fasting blood glucose level and diabetes mellitus

description: Result of the Optimal Discriminant Analysis via UniODA. (TXT 24 kb)
DOI: 10.6084/m9.figshare.c.3660509_d1
title: Additional file 1: of Cardiovascular disease risk factors in a Nigerian population with impaired fasting blood glucose level and diabetes mellitus

description: Result of the Optimal Discriminant Analysis via UniODA. (TXT 24 kb)
DOI: 10.6084/m9.figshare.c.3661670_d2.v1
title: Additional file 2: of Effectiveness of a serological tool to predict malaria transmission intensity in an elimination setting

description: Relationship of antibodies.xlsx. Scatter-plots of OD values obtained for antibodies of each species for the Kurunegala district and Moneragala district. (XLSX 109Â kb)
DOI: 10.6084/m9.figshare.c.3661670_d2
title: Additional file 2: of Effectiveness of a serological tool to predict malaria transmission intensity in an elimination setting

description: Relationship of antibodies.xlsx. Scatter-plots of OD values obtained for antibodies of each species for the Kurunegala district and Moneragala district. (XLSX 109Â kb)
DOI: 10.6084/m9.figshare.28049963
title: Muscari pallens raw GC-MS files

description: Metabolite extraction from Muscari pallens leaf tissue
DOI: 10.6084/m9.figshare.28049963.v1
title: Muscari pallens raw GC-MS files

description: Metabolite extraction from Muscari pallens leaf tissue
DOI: 10.6084/m9.figshare.c.3661712_d2.v1
title: Additional file 2: of Comparative transcriptome analysis reveals candidate genes for the biosynthesis of natural insecticide in Tanacetum cinerariifolium

description: List of unigenes of both PYT_L and PYT_F samples with their GO Classification for Biological Process. (XLS 29 kb)
DOI: 10.6084/m9.figshare.c.3661712_d2
title: Additional file 2: of Comparative transcriptome analysis reveals candidate genes for the biosynthesis of natural insecticide in Tanacetum cinerariifolium

description: List of unigenes of both PYT_L and PYT_F samples with their GO Classification for Biological Process. (XLS 29 kb)
DOI: 10.6084/m9.figshare.c.3661712_d3.v1
title: Additional file 3: of Comparative transcriptome analysis reveals candidate genes for the biosynthesis of natural insecticide in Tanacetum cinerariifolium

description: List of unigenes of PYT_L and PYT_F samples with their GO Classification for Cellular components. (XLS 27 kb)
DOI: 10.6084/m9.figshare.c.3661712_d3
title: Additional file 3: of Comparative transcriptome analysis reveals candidate genes for the biosynthesis of natural insecticide in Tanacetum cinerariifolium

description: List of unigenes of PYT_L and PYT_F samples with their GO Classification for Cellular components. (XLS 27 kb)
DOI: 10.6084/m9.figshare.c.3661718_d1.v1
title: Additional file 1: of PANSAID – PAracetamol and NSAID in combination: study protocol for a randomised trial

description: SPIRIT 2013 Checklist: Recommended items to address in a clinical trial protocol and related documents*. SPIRIT figure: PANSAID. (ZIP 47 kb)
DOI: 10.6084/m9.figshare.c.3661712_d4.v1
title: Additional file 5: of Comparative transcriptome analysis reveals candidate genes for the biosynthesis of natural insecticide in Tanacetum cinerariifolium

description: List of tissue specific unigenes assigned to KEGG pathway with their KEGG IDs and Annotation for PYT_L and PYT_F samples. (XLS 18406 kb)
DOI: 10.6084/m9.figshare.c.3661718_d1
title: Additional file 1: of PANSAID – PAracetamol and NSAID in combination: study protocol for a randomised trial

description: SPIRIT 2013 Checklist: Recommended items to address in a clinical trial protocol and related documents*. SPIRIT figure: PANSAID. (ZIP 47 kb)
DOI: 10.6084/m9.figshare.c.3661712_d4
title: Additional file 5: of Comparative transcriptome analysis reveals candidate genes for the biosynthesis of natural insecticide in Tanacetum cinerariifolium

description: List of tissue specific unigenes assigned to KEGG pathway with their KEGG IDs and Annotation for PYT_L and PYT_F samples. (XLS 18406 kb)
DOI: 10.6084/m9.figshare.c.3661712_d5.v1
title: Additional file 1: of Comparative transcriptome analysis reveals candidate genes for the biosynthesis of natural insecticide in Tanacetum cinerariifolium

description: GO and Pfam ID for PYT_L and PYT_F samples. (XLS 19756 kb)
DOI: 10.6084/m9.figshare.c.3661712_d5
title: Additional file 1: of Comparative transcriptome analysis reveals candidate genes for the biosynthesis of natural insecticide in Tanacetum cinerariifolium

description: GO and Pfam ID for PYT_L and PYT_F samples. (XLS 19756 kb)
DOI: 10.6084/m9.figshare.c.3661763_d1.v1
title: Additional file 1: of Development of a Microsoft Excel tool for one-parameter Rasch model of continuous items: an application to a safety attitude survey

description: Microsoft Excel-based computer module for continuous item responses. (XLSM 2705 kb)
DOI: 10.6084/m9.figshare.c.3661763_d1
title: Additional file 1: of Development of a Microsoft Excel tool for one-parameter Rasch model of continuous items: an application to a safety attitude survey

description: Microsoft Excel-based computer module for continuous item responses. (XLSM 2705 kb)
DOI: 10.6084/m9.figshare.c.3661757_d1.v1
title: Additional file 1: of Retrospective study of RAS/PIK3CA/BRAF tumor mutations as predictors of response to first-line chemotherapy with bevacizumab in metastatic colorectal cancer patients

description: Row data about clinicopathological features and clinical outcomes with omitting personally identifiable information of patients. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3661757_d1
title: Additional file 1: of Retrospective study of RAS/PIK3CA/BRAF tumor mutations as predictors of response to first-line chemotherapy with bevacizumab in metastatic colorectal cancer patients

description: Row data about clinicopathological features and clinical outcomes with omitting personally identifiable information of patients. (XLSX 27 kb)
DOI: 10.25919/pegs-ez11
title: Parkes observations for project P1189 semester 2024OCTS_03

description: The solar wind and space weather events have a significant impact on the solar system and can pose hazards to both space and Earth-based technologies. Understanding the origins of the solar wind and space weather is therefore essential to comprehend how these events are driven and to enhance space weather prediction efforts. Magnetic structures such as coronal holes, helmet streamers, and prominences in the lower corona are believed to be key drivers of the winds and coronal mass ejections (CMEs). However, there are very few observational constraints on the solar wind and space weather events at low solar altitudes (&lt; 20 solar radii), as this region is inaccessible to space probes. In this proposal, we aim to monitor a set of pulsars as they pass within 5.7 degrees of the Sun. Using the UWL receiver on the Parkes Radio Telescope, we will make precision measurements of the dispersive group delay and Faraday rotation of the pulses. This will enable us to investigate the densities and magnetic fields of the coronal structures driving the wind and to observe approximately $6 \pm 4$ CMEs as they pass by the pulsars serendipitously. We will integrate this data with complementary efforts to study the solar wind via interplanetary scintillation, constraints from space probes, and simulations. This approach provides an exciting opportunity to develop a comprehensive understanding of the solar wind and space weather.
DOI: 10.6084/m9.figshare.c.3661790_d6.v1
title: Additional file 6: Table S4. of Functional changes in mRNA expression and alternative pre-mRNA splicing associated with the effects of nutrition on apoptosis and spermatogenesis in the adult testis

description: Identification of putative miRNA-mRNA pairs on the basis of target prediction and the negative regulatory effect of miRNAs on mRNA expression levels. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3661790_d6
title: Additional file 6: Table S4. of Functional changes in mRNA expression and alternative pre-mRNA splicing associated with the effects of nutrition on apoptosis and spermatogenesis in the adult testis

description: Identification of putative miRNA-mRNA pairs on the basis of target prediction and the negative regulatory effect of miRNAs on mRNA expression levels. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3661790_d7
title: Additional file 3: Table S2. of Functional changes in mRNA expression and alternative pre-mRNA splicing associated with the effects of nutrition on apoptosis and spermatogenesis in the adult testis

description: Differentially expressed mRNAs in testis from sheep fed a low or high diet (N = 8 for each treatment). Note: Fold change (FC) = CPM of low diet group/CPM of high diet group. CPM (Counts per million) = (mRNAs reads number/total reads number per library) Ă  1,000,000. The significant DE mRNAs were determined by false discovery rate (FDR) &lt; 0.05. (XLSX 168 kb)