cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34740/kaggle/dsv/7509751
title: MetaCognition: Thinking About Thinking
DOI: 10.17894/ucph.42920365-b929-47c4-903f-5dad523edb35
title: Supporting data for Rescaling protein-protein interactions improves Martini 3 for flexible proteins in solution
DOI: 10.25381/cput.24476326
title: An analysis of data governance implications on big data

description: <b>Ethical Clearance Reference Number : 207066922/2022/25</b>This study seeks to analyze the data governance implications on big data, the probable challenges and prospects that big data adoption may present in various organizations. The data contains the list of participants, years of experience and their respective roles within various organizations. The data also contains interview transcripts for all the semi-structured interviews that were conducted by the researcher.
DOI: 10.25381/cput.24476326.v1
title: AN ANALYSIS OF DATA GOVERNANCE IMPLICATIONS ON BIG DATA

description: <b>Ethical Clearance Reference Number : 207066922/2022/25</b>This study seeks to analyze the data governance implications on big data, the probable challenges and prospects that big data adoption may present in various organizations. The data contains the list of participants, years of experience and their respective roles within various organizations. The data also contains interview transcripts for all the semi-structured interviews that were conducted by the researcher.
DOI: 10.4121/089afa18-bbd5-493e-8a6c-39e1ca7b2a59.v1
title: Dataset of Science Based Target Network's Freshwater Quantity Target

description: <strong>SUMMARY</strong>This data product provides the Freshwater Quantity Target of the Science Based Targets Network (SBTN). Freshwater Quantity Targets are expressed as the percentage by which current collective water use levels must be reduced to stay within ecologically sustainable limits. The Targets are developed at the sub-catchment scale, as delineated by the HydroBASINS database level 05, with global coverage except Antarctica. For each sub-catchment, twelve monthly and one annual percentage reduction values are provided. Methods and data used to develop the Freshwater Quantity Target are described in the technical documentation (attached as pdf to the data product). Freshwater Quantity Target contained in this data product can also be accessed through a user friendly web application (https://www.acc.waterfootprintassessmenttool.org/?b=sbtn) which allows retrieval of (bulk) site-specific reduction targets.
DOI: 10.25381/cput.23998320
title: The effect of schedule driven project management in a manufacturing company in Cape Town data set.

description: Clearance Certificate No | 2021 FBMSREC 101The attached file represents the data set which consists of all responses received while collecting data for the research titled "The effect of schedule driven project management in a manufacturing company in Cape Town data set''. The commentary and final conclusion of the research was based on the attached data set as the main source of data for the research.<br>
DOI: 10.25381/cput.23998320.v1
title: The effect of schedule driven project management in a manufacturing company in Cape Town data set.

description: Clearance Certificate No | 2021 FBMSREC 101The attached file represents the data set which consists of all responses received while collecting data for the research titled "The effect of schedule driven project management in a manufacturing company in Cape Town data set''. The commentary and final conclusion of the research was based on the attached data set as the main source of data for the research.<br>
DOI: 10.25381/cput.24590862
title: Comparative analysis of explainable deep learning models for identification of plant nutrient deficiencies

description: Ethics Reference no: 214011097/2022/21Essential mineral nutrients play a crucial role in the growth and survival of plants. The lack of nutrients in plants threatens global food security and affects farmers who solely depend on producing healthy crops. Traditionally the identification of nutrient deficiencies in a crop is done manually by experienced farmers. Deep learning (DL) has shown promise in image classification. However, the lack of understanding regarding the accuracy and explainability of specific DL models for the identification of plant nutrient deficiencies is a hindrance to making informed decisions about the suitability of these algorithms for practical implementation. The study used two plant datasets: rice and banana. The three DL models were a Convolutional Neural Network (CNN), and two pre-trained models: Inception-V3 and Visual Geometry Group (VGG-16). For the explainability of the models, the study used two XAI techniques: Shapley Additive exPlanations (SHAP) and Gradient-weighted Class Activation Mapping (Grad-CAM). The study found that the choice of DL models has a significant impact on the performance of nutrient deficiency identification in different plant datasets.
DOI: 10.17630/7bc9507c-e817-4da7-988a-02fcd1a6f4fa
title: Tandem sequential catalytic enantioselective synthesis of highly-functionalised tetrahydroindolizine derivatives (dataset)
DOI: 10.5281/zenodo.10590037
title: Raw data from "Morphology-resolved search for mutations in non- responders to anti-EGFR therapy in colorectal carcinoma" part 3/7

description: We performed targeted sequencing of morphological regions of primary colon cancer tumors for patients receiveing anti-EGFR (KRAS wild type) treatment as first line in metastatic setting. These are the raw FASTQ files, part 3 out of 7.
DOI: 10.5281/zenodo.10590038
title: Raw data from "Morphology-resolved search for mutations in non- responders to anti-EGFR therapy in colorectal carcinoma" part 3/7

description: We performed targeted sequencing of morphological regions of primary colon cancer tumors for patients receiveing anti-EGFR (KRAS wild type) treatment as first line in metastatic setting. These are the raw FASTQ files, part 3 out of 7.
DOI: 10.5281/zenodo.8118921
title: Data presented in figures of "Measurement Report: Insights into the chemical composition of molecular clusters present in the free troposphere over the Southern Indian Ocean: observations from the Maïdo observatory (2150 m a.s.l., Reunion Island)"

description: This dataset includes the data shown in the figures of "Measurement Report: Insights into the chemical composition of molecular clusters present in the free troposphere over the Southern Indian Ocean: observations from the Maïdo observatory (2150 m a.s.l., Reunion Island)". Read me files containing information on the reported data can be found in the different folders.
DOI: 10.5281/zenodo.10302533
title: Data presented in figures of "Measurement Report: Insights into the chemical composition and origin of molecular clusters and potential precursor molecules present in the free troposphere over the Southern Indian Ocean: observations from the Maïdo observatory (2150 m a.s.l., Reunion Island)"

description: This dataset includes the data shown in the figures of "Measurement Report: Insights into the chemical composition and origin of molecular clusters present in the free troposphere over the Southern Indian Ocean: observations from the Maïdo observatory (2150 m a.s.l., Reunion Island)". Read me files containing information on the reported data can be found in the different folders.
DOI: 10.5281/zenodo.8118920
title: Data presented in figures of "Measurement Report: Insights into the chemical composition and origin of molecular clusters and potential precursor molecules present in the free troposphere over the Southern Indian Ocean: observations from the Maïdo observatory (2150 m a.s.l., Reunion Island)"

description: This dataset includes the data shown in the figures of "Measurement Report: Insights into the chemical composition and origin of molecular clusters present in the free troposphere over the Southern Indian Ocean: observations from the Maïdo observatory (2150 m a.s.l., Reunion Island)". Read me files containing information on the reported data can be found in the different folders.
DOI: 10.25381/cput.24565219
title: The level of alignment between the use of implemented Health Information Technologies (HITs) and the clinical work activities of nurses in the public hospitals of Cape Town

description: CPUT/HW-REC2017/H11FIDREC_204182980This qualitative study aimed to understand, analyse and assess nurses’ lived experiences using digital health technologies (DHTs) as part of their work practices.· It further sought to ascertain how nurses make sense of the work practices as DHTs influence their daily work activities, and to analyse and examine the misalignment between the intended use of DHTs and the lived experiences of nurses. The dataset contains the transcription of interviews conducted with participants at selected hospitals and are categorised per research sub-question.
DOI: 10.25381/cput.24565219.v2
title: The level of alignment between the use of implemented Health Information Technologies (HITs) and the clinical work activities of nurses in the public hospitals of Cape Town

description: CPUT/HW-REC2017/H11FIDREC_204182980This qualitative study aimed to understand, analyse and assess nurses’ lived experiences using digital health technologies (DHTs) as part of their work practices.· It further sought to ascertain how nurses make sense of the work practices as DHTs influence their daily work activities, and to analyse and examine the misalignment between the intended use of DHTs and the lived experiences of nurses. The dataset contains the transcription of interviews conducted with participants at selected hospitals and are categorised per research sub-question.
DOI: 10.25381/cput.24565219.v1
title: <b>THE LEVEL OF ALIGNMENT BETWEEN THE USE OF IMPLEMENTED HEALTH INFORMATION TECHNOLOGIES (HITS) AND THE CLINICAL WORK ACTIVITIES OF NURSES IN THE PUBLIC HOSPITALS OF </b><b>CAPE TOWN</b>

description: CPUT/HW-REC2017/H11FIDREC_204182980This qualitative study aimed to understand, analyse and assess nurses’ lived experiences using digital health technologies (DHTs) as part of their work practices.· It further sought to ascertain how nurses make sense of the work practices as DHTs influence their daily work activities, and to analyse and examine the misalignment between the intended use of DHTs and the lived experiences of nurses. The dataset contains the transcription of interviews conducted with participants at selected hospitals and are categorised per research sub-question.
DOI: 10.4121/d40d3812-c3db-46bb-8394-24473c735b23
title: Supporting data for: "Active and Passive Monitoring of Fault Reactivation under Stress Cycling"

description: Increased seismicity, due to subsurface activities has led to increased interest in monitoring and seismic risk mitigation. In this study we combined passive and active acoustic monitoring methods to monitor fault sliding and reactivation in the laboratory. Acoustic emission (AE) and ultrasonic transmission measurements were performed during stress-cycling to monitor stress-driven fault reactivation. This dataset contains the recorded acoustic emission, the recorded ultrasonic waveforms and the loading data (i.e. axial stress, confining stress, displacement) of the rock mechanical experiment.
DOI: 10.4121/d40d3812-c3db-46bb-8394-24473c735b23.v1
title: Supporting data for: "Active and Passive Monitoring of Fault Reactivation under Stress Cycling"

description: Increased seismicity, due to subsurface activities has led to increased interest in monitoring and seismic risk mitigation. In this study we combined passive and active acoustic monitoring methods to monitor fault sliding and reactivation in the laboratory. Acoustic emission (AE) and ultrasonic transmission measurements were performed during stress-cycling to monitor stress-driven fault reactivation. This dataset contains the recorded acoustic emission, the recorded ultrasonic waveforms and the loading data (i.e. axial stress, confining stress, displacement) of the rock mechanical experiment.
DOI: 10.25381/cput.24302359
title: A metric model for measuring the value of enterprise architecture in developing countries

description: <b>Ethical clearance reference number</b> 2019/219492948/24Many organisations across the world are challenged by factors of changes, which manifest from different events such as technological innovations, global trends and introduction to new business processes. Some of these factors influence the alignment between business activities and its information system and technology (IS/IT) solutions. Many government organisations do not have a holistic view of their environments, which makes alignment between IS/IT and business processes difficult towards providing consistent solutions for changing needs. Such organisations have deployed enterprise architecture (EA) to manage these challenges. EA is used to manage and regulate business activities and its associated IS/IT solutions towards the attainment of its organisational goals.<br>However, many developing countries, particularly in the African continent, are increasingly challenged with the implementation of EA because they are not able to establish and assess the value. This is due to lack of standard metrics that can be used to measure the value of EA. As a result, many governments’ institutions are losing out from the benefits that the implementation of EA offers. The lack of a metric model to measure the value of EA hinders some governments’ institutions in their attempts to employ the concept, for the purposes of improving service delivery. The aim of the study is to propose a solution through a metrics model, which can be used to measure the value and benefits of EA within governments’ institutions in developing countries.<br><br>The study followed the interpretivist epistemological stance, which was supported by the qualitative method. The research design was the case study, with the government of Egypt and the government of Ghana. Data collection was documentation about EA of these government’s environments. The sociotechnical theories, Activity Theory (AT) and the Dimension of Change (DS) of the Structuration Theory (ST) were used to underpin the study. Data from the two cases were gathered and analysed, separately as AT was used to guide the analysis, whilst DS was used to interpret the findings. Based on the interpretation, an enterprise architecture metrics model (EAMM) was developed.<br>
DOI: 10.25381/cput.24302359.v2
title: A metric model for measuring the value of enterprise architecture in developing countries

description: <b>Ethical clearance reference number</b> 2019/219492948/24Many organisations across the world are challenged by factors of changes, which manifest from different events such as technological innovations, global trends and introduction to new business processes. Some of these factors influence the alignment between business activities and its information system and technology (IS/IT) solutions. Many government organisations do not have a holistic view of their environments, which makes alignment between IS/IT and business processes difficult towards providing consistent solutions for changing needs. Such organisations have deployed enterprise architecture (EA) to manage these challenges. EA is used to manage and regulate business activities and its associated IS/IT solutions towards the attainment of its organisational goals.<br>However, many developing countries, particularly in the African continent, are increasingly challenged with the implementation of EA because they are not able to establish and assess the value. This is due to lack of standard metrics that can be used to measure the value of EA. As a result, many governments’ institutions are losing out from the benefits that the implementation of EA offers. The lack of a metric model to measure the value of EA hinders some governments’ institutions in their attempts to employ the concept, for the purposes of improving service delivery. The aim of the study is to propose a solution through a metrics model, which can be used to measure the value and benefits of EA within governments’ institutions in developing countries.<br><br>The study followed the interpretivist epistemological stance, which was supported by the qualitative method. The research design was the case study, with the government of Egypt and the government of Ghana. Data collection was documentation about EA of these government’s environments. The sociotechnical theories, Activity Theory (AT) and the Dimension of Change (DS) of the Structuration Theory (ST) were used to underpin the study. Data from the two cases were gathered and analysed, separately as AT was used to guide the analysis, whilst DS was used to interpret the findings. Based on the interpretation, an enterprise architecture metrics model (EAMM) was developed.<br>
DOI: 10.25381/cput.24302359.v1
title: <b>A METRIC MODEL FOR MEASURING THE VALUE OF ENTERPRISE ARCHITECTURE IN DEVELOPING COUNTRIES</b>

description: <b>Ethical clearance reference number</b> 2019/219492948/24Many organisations across the world are challenged by factors of changes, which manifest from different events such as technological innovations, global trends and introduction to new business processes. Some of these factors influence the alignment between business activities and its information system and technology (IS/IT) solutions. Many government organisations do not have a holistic view of their environments, which makes alignment between IS/IT and business processes difficult towards providing consistent solutions for changing needs. Such organisations have deployed enterprise architecture (EA) to manage these challenges. EA is used to manage and regulate business activities and its associated IS/IT solutions towards the attainment of its organisational goals.<br>However, many developing countries, particularly in the African continent, are increasingly challenged with the implementation of EA because they are not able to establish and assess the value. This is due to lack of standard metrics that can be used to measure the value of EA. As a result, many governments’ institutions are losing out from the benefits that the implementation of EA offers. The lack of a metric model to measure the value of EA hinders some governments’ institutions in their attempts to employ the concept, for the purposes of improving service delivery. The aim of the study is to propose a solution through a metrics model, which can be used to measure the value and benefits of EA within governments’ institutions in developing countries.<br><br>The study followed the interpretivist epistemological stance, which was supported by the qualitative method. The research design was the case study, with the government of Egypt and the government of Ghana. Data collection was documentation about EA of these government’s environments. The sociotechnical theories, Activity Theory (AT) and the Dimension of Change (DS) of the Structuration Theory (ST) were used to underpin the study. Data from the two cases were gathered and analysed, separately as AT was used to guide the analysis, whilst DS was used to interpret the findings. Based on the interpretation, an enterprise architecture metrics model (EAMM) was developed.<br>
DOI: 10.17630/9ea8f970-c3bb-4fed-b6a2-db95e1148d8a
title: The natural history of biocatalytic mechanisms (dataset)
DOI: 10.17630/3b084beb-2d61-4da4-80e4-2efb0fb91aca
title: Mating failure shapes the patterns of sperm precedence in an insect (dataset)
DOI: 10.5281/zenodo.10589953
title: Understanding the landscape of structural variants in Indian population and their implications in genetic diseases

description: Appendix datasets for Thesis

Appendix 1 

List of 38560 variants in the final SV callset with the chromosomal coordinates and variant frequencies

Appendix 2 

List of 22589 rare deletions with their comprehensive annotations

Appendix 3

List of 192 P/LP deletion/duplication from the AnnotSV classification

Appendix 4 

List of final 134 P/LP deletions after manual review

Appendix 5 

List of 10 P/LP deletions having full gene deletions

Appendix 6 

List of 27 P/LP deletions with their previously reported P_loss_sources

Appendix 7

Table of disease-gene enrichment analysis for the genes affected by 134 P/LP deletions
DOI: 10.5281/zenodo.10589954
title: Understanding the landscape of structural variants in Indian population and their implications in genetic diseases

description: Appendix datasets for Thesis

Appendix 1 

List of 38560 variants in the final SV callset with the chromosomal coordinates and variant frequencies

Appendix 2 

List of 22589 rare deletions with their comprehensive annotations

Appendix 3

List of 192 P/LP deletion/duplication from the AnnotSV classification

Appendix 4 

List of final 134 P/LP deletions after manual review

Appendix 5 

List of 10 P/LP deletions having full gene deletions

Appendix 6 

List of 27 P/LP deletions with their previously reported P_loss_sources

Appendix 7

Table of disease-gene enrichment analysis for the genes affected by 134 P/LP deletions
DOI: 10.15129/e51b58cd-110a-4eee-83f7-c84383ed3519
title: Data for: "Martinoid: The Martini Peptoid Force Field"

description: The contents of the folders are outlined below, for specific information 
pertaining to a given files relevance please refer to the README.txt file
within each sub-directory.

The folders are grouped in terms of thier usage within parameterisation 
process:

Bonded Term Mapping:
~~~~~~~~~~~~~~~~~~~~
 &gt; Additional Residues - MP2/6-31G(d) torsion scans and atomistic term 
 fitting files for residues NmO, Ns and Nt as well as files for partial 
 charge fitting following the method outlined in the article available at
 (https://doi.org/10.1021/acs.jpcb.3c03725).

 &gt; BackboneMapping - all atom (AA) and coarse grained (CG) trajectories 
 and tools for comparison of BB-BB-BB angle term choice at the CG level.

 &gt; MappingTrajectories - all atom (AA) and coarse grained (CG) trajectories 
 and tools for comparison of BB-BB-BB angle term choice at the CG level for 
 a variety of peptoid trimers. 

 &gt; HelicalOptimisation - all atom (AA) and coarse grained (CG) trajectories 
 and tools for comparison of BB-BB-BB angle and BB-BB-BB-BB dihedral term
 choice at the CG level for (Nk-Nfes-Nfes)2 helical fragment. 

 &gt; SWARMCGOptimisedITPS - optimised *itp structure files for peptoid dimers 
 as identified by SWARMCG and with which the superimposed parameter sets are 
 generated. 

 &gt; FinalAssemblyAc-Nf-Nf - assessment of impact of parameter superposition for dimer
 Ac-Nf-Nf, trajectories and measurement tools. 

Nonbonded Term Mapping:
~~~~~~~~~~~~~~~~~~~~~~~
 &gt; AssemblyStudy - single monomer self-assembly study for peptoids to assess
 the accuracy of bead type selection for these species by assessing whether 
 aggregation occurs/does not occur. 

 &gt; CG_LogD - relevant files for estimating the LogD of various peptoid monomers
 to assess whether bead choices were sufficently accurate. 

 &gt; HPLC_LogD_Data - chromatograms for peptoid monomers onbtained experimentally 
 using a gradient of H2O : acetonitrile (+ 0.1 % TFA). 

 &gt; NMRCharacterisation - structural validation of pure peptoid monomer material. 

Model Validation Data:
~~~~~~~~~~~~~~~~~~~~~~
 &gt; TrimerAssembly - assembly of Nf-Nke-Nf in form of tape across PBC, this is relevant 
 for comparison to experimnetal Cryo-TEM measurements. 

 &gt; FreeAssemblyNf-Nke-Nf - experimnet to illsutrate 2D bilayer like structures are formed
 by this trimer, forming the basis for the TrimerAssembly preposition that the nanostriations
 seen experimnetally are 'tape-like' 

 &gt; NanosheetStudy - validation of parameterisation method using peptoid nanosheet forming 
 oligomers at oil-water interface, validating within a reasonable margin the length of said 
 oligomers in the assembled state. 


Hamish W. A. Swanson (04.12.23)
DOI: 10.17630/b0b1a7d6-ba1e-45a4-88c0-2aba9ed4ef9b
title: Data underpinning "Isothiourea-Catalyzed Atropselective Acylation of Biaryl Phenols via Sequential Desymmetrisation / Kinetic Resolution"