cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5710354
title: Data and code for: Viviparous mothers impose stronger glucocorticoid‐mediated maternal stress effects on their offspring than oviparous mothers

description: <strong>Data and code accompanying the manuscript "Viviparous mothers impose stronger glucocorticoid‐mediated maternal stress effects on their offspring than oviparous mothers", MacLeod KJ, While GM, Uller, T, Ecology & Evolution 2021.</strong> Code is in an R file - can be opened with any txt app. Metadata is in sheet 2 of the main data sheet (xlsx). Queries to kirstyjmacleod@gmail.com <strong>Publication abstract</strong>: Maternal stress during gestation has the potential to affect offspring development via changes in maternal physiology, such as increases in circulating levels of glucocorticoid hormones that are typical after exposure to a stressor. While the effects of elevated maternal glucocorticoids on offspring phenotype (i.e., “glucocorticoid‐mediated maternal effects”) have been relatively well established in laboratory studies, it remains poorly understood how strong and consistent such effects are in natural populations. Using a meta‐analysis of studies of wild mammals, birds, and reptiles, we investigate the evidence for effects of elevated maternal glucocorticoids on offspring phenotype and investigate key moderators that might influence the strength and direction of these effects. In particular, we investigate the potential importance of reproductive mode (viviparity vs. oviparity). We show that glucocorticoid‐mediated maternal effects are stronger, and likely more deleterious, in mammals and viviparous squamate reptiles compared with birds, turtles, and oviparous squamates. No other moderators (timing and type of manipulation, age at offspring measurement, or type of trait measured) were significant predictors of the strength or direction of the phenotypic effects on offspring. These results provide evidence that the evolution of a prolonged physiological association between embryo and mother sets the stage for maladaptive, or adaptive, prenatal stress effects in vertebrates driven by glucocorticoid elevation.
DOI: 10.5281/zenodo.5543949
title: ogbn-papers100M training splits

description: These are training/validation and test splits for ogbn-papers100M dataset. The associated code is at Github: ( https://github.com/sunilkmaurya/FSGNN )
DOI: 10.5281/zenodo.5543948
title: ogbn-papers100M training splits

description: These are training/validation and test splits for ogbn-papers100M dataset. The associated code is at Github: ( https://github.com/sunilkmaurya/FSGNN )
DOI: 10.5281/zenodo.5710338
title: Yield and Quality Response of Cassava (Manihot esculenta Crantz) to Nitrogen and Potassium Fertilizer Rates at Arba Minch, Southern Ethiopia

description: <em>Cassava (Manihot esculenta Crentz), is a major staple food crop of the people in most parts of Africa, and plays an important role in terms of food security, employment and income generation for farm families. It is one of important root crops in Ethiopian diet; however there is no research work has been done on rate of nitrogen and potassium fertilizer. Rate of N and K fertilizer are the major factor in determining the quality and quantities of cassava. Thus, this experiment was carried on the influence </em><em>of nitrogen and potassium</em><em> fertilizer rate on yield and qualities of </em><em>cassava </em><em>at Arba Minch. Four levels of N (0, 46, 92 and 138 kg N ha<sup>−1</sup>) and three levels of K (0, 60, and 120 kg K ha<sup>−1</sup>) were arranged in factorial combination in a randomized complete block design (RCBD) with three replications. The results revealed that the main effects of nitrogen fertilizer rates influences all the studied parameters, while the main effect of potassium affects number of tubers per plant and tuber diameter. Interaction effect of N and K influences fresh tuber yield of cassava. The highest fresh tuber yield of cassava was achieved from the combination of 92 kg Nha<sup>-1</sup> with application of 0 kg K ha<sup>−1</sup>, whereas the lowest fresh tuber yield of cassava was obtained from the combination of 0 kg N ha<sup>−1</sup> with 0 kg K ha<sup>−1</sup>. The economic analysis showed that higher net benefit and marginal rate of return were obtained from the application of 92 kg N ha<sup>−1</sup> with 0 kg K ha<sup>−1</sup>. In order to prevent excessive production costs, the use of 92 kg Nha<sup>-1</sup> combined with the application of 0 kg K ha<sup>−1</sup> is recommended. </em>
DOI: 10.5281/zenodo.5710337
title: Yield and Quality Response of Cassava (Manihot esculenta Crantz) to Nitrogen and Potassium Fertilizer Rates at Arba Minch, Southern Ethiopia

description: <em>Cassava (Manihot esculenta Crentz), is a major staple food crop of the people in most parts of Africa, and plays an important role in terms of food security, employment and income generation for farm families. It is one of important root crops in Ethiopian diet; however there is no research work has been done on rate of nitrogen and potassium fertilizer. Rate of N and K fertilizer are the major factor in determining the quality and quantities of cassava. Thus, this experiment was carried on the influence </em><em>of nitrogen and potassium</em><em> fertilizer rate on yield and qualities of </em><em>cassava </em><em>at Arba Minch. Four levels of N (0, 46, 92 and 138 kg N ha<sup>−1</sup>) and three levels of K (0, 60, and 120 kg K ha<sup>−1</sup>) were arranged in factorial combination in a randomized complete block design (RCBD) with three replications. The results revealed that the main effects of nitrogen fertilizer rates influences all the studied parameters, while the main effect of potassium affects number of tubers per plant and tuber diameter. Interaction effect of N and K influences fresh tuber yield of cassava. The highest fresh tuber yield of cassava was achieved from the combination of 92 kg Nha<sup>-1</sup> with application of 0 kg K ha<sup>−1</sup>, whereas the lowest fresh tuber yield of cassava was obtained from the combination of 0 kg N ha<sup>−1</sup> with 0 kg K ha<sup>−1</sup>. The economic analysis showed that higher net benefit and marginal rate of return were obtained from the application of 92 kg N ha<sup>−1</sup> with 0 kg K ha<sup>−1</sup>. In order to prevent excessive production costs, the use of 92 kg Nha<sup>-1</sup> combined with the application of 0 kg K ha<sup>−1</sup> is recommended. </em>
DOI: 10.5281/zenodo.5706015
title: Groundwater potential mapping in the Guelma basin

description: Inventory of groundwater points (Wells, boreholes and springs) used in mapping groundwater potential of the Guelma region. Also the non-water point randomly generated and used in the machine learning models. Finally, the dataset of the conditionning factors in the water point end non-water point locations, used to implement all the models.
DOI: 10.5281/zenodo.5706014
title: Groundwater potential mapping in the Guelma basin

description: Inventory of groundwater points (Wells, boreholes and springs) used in mapping groundwater potential of the Guelma region. Also the non-water point randomly generated and used in the machine learning models. Finally, the dataset of the conditionning factors in the water point end non-water point locations, used to implement all the models.
DOI: 10.15468/nuzvyn
title: Notes on the flora of Madagascar, 26

description: This dataset contains the digitized treatments in Plazi based on the original journal article Callmander, Martin W., Phillipson, Peter B., Gautier, Laurent (2012): Notes on the flora of Madagascar, 26. Candollea 67 (2): 369-372, DOI: 10.15553/c2012v672a17
DOI: 10.34740/kaggle/dsv/2826114
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.15468/qq5t8z
title: An earlier name for Nesaea pubescens Koehne (Lythraceae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Berry, Paul E., Esser, Hans-Joachim (2013): An earlier name for Nesaea pubescens Koehne (Lythraceae). Candollea 68 (1): 65-66, DOI: 10.15553/c2013v681a7
DOI: 10.5255/ukda-sn-855299
title: Knowledge Exchange Partnership European Network on Statelessness and the University of Bristol: Examining the Tensions Between Nationality and Statelessness, 2020-2021

description: The questionnaires are the product of a Knowledge Exchange Partnership between the European Network on Statelessness and the University of Bristol through its PI, Dr Rachel Pougnet - as part of an ESRC postdoctoral fellowship. The KEP investigated the tensions between nationality and statelessness through two related projects: -an examination of the relationship between deprivation of nationality and statelessness -the design of a questionnaire investigating the risks of statelessness posed by the non repatriation of children associated with alleged 'foreign fighters' in Iraq and Syria. This questionnaire was circulated to 3 independent researchers in France, the UK and the Netherlands.
DOI: 10.6084/m9.figshare.17040725
title: Descartes CTD 1

description: subset of descartes CTD for EWCE analysis. This subset was made for running examples in the neurogenomics/MultiEWCE r package
DOI: 10.6084/m9.figshare.17040725.v1
title: Descartes CTD 1

description: subset of descartes CTD for EWCE analysis. This subset was made for running examples in the neurogenomics/MultiEWCE r package
DOI: 10.5281/zenodo.5095177
title: Genome-wide association analyses identify novel Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility

description: The Brugada syndrome GWAS summary statistics Brugada syndrome is a cardiac arrhythmia disorder associated with sudden death in young adults. With the exception of <em>SCN5A</em>, encoding the cardiac sodium channel Na<sub>V</sub>1.5, susceptibility genes remain largely unknown. We performed a genome-wide association meta-analysis comprising 2,820 unrelated cases with Brugada syndrome and 10,001 controls.
description: README chr: chromosome pos: genomic position in GRCh37 rsid: dbSNP ID (if available) effect_allele: effect allele other_allele: other allele beta: meta-analysis association regression coefficient se: standard error of beta p: P value of the association testing n_cohorts: number of cohorts included in the meta-analysis for the specific variant n_all: total number of samples n_cases: total number of cases n_controls: total number of controls direction: direction of effect for each of the 10 cohorts hetISq: I^2 from the meta-analysis heterogeneity test (METAL) hetChiSq: ChiSq from the meta-analysis heterogeneity test (METAL) hetDf: Degrees of freedom in the meta-analysis heterogeneity test (METAL) hetPVal: P-value of the meta-analysis heterogeneity test (METAL) eaf_all: effect allele frequency overall eaf_cases: effect allele frequency in cases eaf_controls: effect allele frequency in controls
DOI: 10.5281/zenodo.5095176
title: Genome-wide association analyses identify novel Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility

description: The Brugada syndrome GWAS summary statistics Brugada syndrome is a cardiac arrhythmia disorder associated with sudden death in young adults. With the exception of <em>SCN5A</em>, encoding the cardiac sodium channel Na<sub>V</sub>1.5, susceptibility genes remain largely unknown. We performed a genome-wide association meta-analysis comprising 2,820 unrelated cases with Brugada syndrome and 10,001 controls.
description: README chr: chromosome pos: genomic position in GRCh37 rsid: dbSNP ID (if available) effect_allele: effect allele other_allele: other allele beta: meta-analysis association regression coefficient se: standard error of beta p: P value of the association testing n_cohorts: number of cohorts included in the meta-analysis for the specific variant n_all: total number of samples n_cases: total number of cases n_controls: total number of controls direction: direction of effect for each of the 10 cohorts hetISq: I^2 from the meta-analysis heterogeneity test (METAL) hetChiSq: ChiSq from the meta-analysis heterogeneity test (METAL) hetDf: Degrees of freedom in the meta-analysis heterogeneity test (METAL) hetPVal: P-value of the meta-analysis heterogeneity test (METAL) eaf_all: effect allele frequency overall eaf_cases: effect allele frequency in cases eaf_controls: effect allele frequency in controls
DOI: 10.15468/kvckag
title: A clarification of B. C. Seeman’s Malagasy species of Colea Meisn. (Bignoniaceae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Phillipson, Peter B, Callmander, Martin W. (2013): A clarification of B. C. Seeman’s Malagasy species of Colea Meisn. (Bignoniaceae). Candollea 68 (1): 67-71, DOI: 10.15553/c2013v681a8
DOI: 10.25592/uhhfdm.1902
title: Golden Sheet (AO 19225) from the Louvre in Paris (3D model)

description: ID: AO 19225<br> Object type: sheet<br> Material: metal (gold)<br> Measurements: ?<br> Provenience: Umma (mod. Tell Jokha?)<br> Period/Date: Early Dynastic IIIb (c. 2500-2340 BCE)<br> Language: Sumerian<br> Genre: royal/monumental (witness)<br> Museum/Collection: Louvre Museum, Paris, France<br> CDLI: P222828 The research for this 3D object was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany´s Excellence Strategy – EXC 2176 ‘Understanding Written Artefacts: Material, Interaction and Transmission in Manuscript Cultures’, project no. 390893796. The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at Universität Hamburg.
DOI: 10.25592/uhhfdm.919
title: Golden Sheet (AO 19225) from the Louvre in Paris (3D model)

description: ID: AO 19225<br> Object type: sheet<br> Material: metal (gold)<br> Measurements: ?<br> Provenience: Umma (mod. Tell Jokha?)<br> Period/Date: Early Dynastic IIIb (c. 2500-2340 BCE)<br> Language: Sumerian<br> Genre: royal/monumental (witness)<br> Museum/Collection: Louvre Museum, Paris, France<br> CDLI: P222828 The research for this 3D object was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany´s Excellence Strategy – EXC 2176 ‘Understanding Written Artefacts: Material, Interaction and Transmission in Manuscript Cultures’, project no. 390893796. The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at Universität Hamburg.
DOI: 10.5281/zenodo.5710431
title: Tringa solitaria SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5710430
title: Tringa solitaria SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4905618
title: Sami-Trop: 12-lead ECG traces with age and mortality annotations

description: SaMi-Trop is an NIH-funded prospective cohort of 1959 patients with chronic Chagas cardiomyopathy to evaluate whether a clinical prediction rule based on ECG, brain natriuretic peptide (BNP) levels, and other biomarkers can be useful in clinical practice. A subset of the SaMi-Trop dataset with annotations of age and mortality and the correspondent ECG traces is openly available here. Contain two files `exams.csv` and `exams.hdf5`. The files contain information about the first ECG exam taken by 1631 patients. "exams.csv": is a comma-separated values (csv) file containing the columns "exam_id": id used for internal usages; "age": patient age in years at the moment the of the exam; "is_male": true if the patient is male, false if the patient is female; "normal_ecg": True if the patient has a normal ECG; "death": true if the patient dies in the follow-up time "timey": if the patient dies it is the time to the death of the patient. If not, it is the follow-up time "exams.hdf5": The HDF5 file containing a single dataset named `tracings`. This dataset is a `(1631, 4096, 12)` tensor. The first dimension corresponds to the 1631 different exams; the second dimension corresponds to the 4096 signal samples; the third dimension to the 12 different leads of the ECG exams in the following order: `{DI, DII, DIII, AVR, AVL, AVF, V1, V2, V3, V4, V5, V6}`. The signals are sampled at 400 Hz. Some signals originally have a duration of 10 seconds (10 * 400 = 4000 samples) and others of 7 seconds (7 * 400 = 2800 samples). In order to make them all have the same size (4096 samples), we fill them with zeros on both sizes. For instance, for a 7 seconds ECG signal with 2800 samples we include 648 samples at the beginning and 648 samples at the end, yielding 4096 samples that are then saved in the hdf5 dataset. <br> The relation between neural-network predicted age and mortality is established in:<br> "Deep neural network estimated electrocardiographic-age as a mortality predictor"<br> Emilly M Lima, Antônio H Ribeiro, Gabriela MM Paixão, Manoel Horta Ribeiro, Marcelo M Pinto Filho, Paulo R Gomes, Derick M Oliveira, Ester C Sabino, Bruce B Duncan, Luana Giatti, Sandhi M Barreto, Wagner Meira Jr, Thomas B Schön, Antonio Luiz P Ribeiro. MedRXiv (2021) https://www.doi.org/10.1101/2021.02.19.21251232<br> <br> The companion code can be found in: https://github.com/antonior92/ecg-age-prediction The SaMi-Trop dataset is described in: "Longitudinal study of patients with chronic Chagas cardiomyopathy in Brazil (SaMi-Trop project): a cohort profile" Clareci Silva Cardoso, Ester Cerdeira Sabino, Claudia Di Lorenzo Oliveira, Lea Campos de Oliveira, Ariela Mota Ferreira, Edécio Cunha-Neto, Ana Luiza Bierrenbach, João Eduardo Ferreira, Desirée Sant'Ana Haikal, Arthur L Reingold, Antonio Luiz P Ribeiro. BMJ Open (2016);6:e011181. doi: 10.1136/bmjopen-2016-011181
DOI: 10.5281/zenodo.4905617
title: Sami-Trop: 12-lead ECG traces with age and mortality annotations

description: SaMi-Trop is an NIH-funded prospective cohort of 1959 patients with chronic Chagas cardiomyopathy to evaluate whether a clinical prediction rule based on ECG, brain natriuretic peptide (BNP) levels, and other biomarkers can be useful in clinical practice. A subset of the SaMi-Trop dataset with annotations of age and mortality and the correspondent ECG traces is openly available here. Contain two files `exams.csv` and `exams.hdf5`. The files contain information about the first ECG exam taken by 1631 patients. "exams.csv": is a comma-separated values (csv) file containing the columns "exam_id": id used for internal usages; "age": patient age in years at the moment the of the exam; "is_male": true if the patient is male, false if the patient is female; "normal_ecg": True if the patient has a normal ECG; "death": true if the patient dies in the follow-up time "timey": if the patient dies it is the time to the death of the patient. If not, it is the follow-up time "exams.hdf5": The HDF5 file containing a single dataset named `tracings`. This dataset is a `(1631, 4096, 12)` tensor. The first dimension corresponds to the 1631 different exams; the second dimension corresponds to the 4096 signal samples; the third dimension to the 12 different leads of the ECG exams in the following order: `{DI, DII, DIII, AVR, AVL, AVF, V1, V2, V3, V4, V5, V6}`. The signals are sampled at 400 Hz. Some signals originally have a duration of 10 seconds (10 * 400 = 4000 samples) and others of 7 seconds (7 * 400 = 2800 samples). In order to make them all have the same size (4096 samples), we fill them with zeros on both sizes. For instance, for a 7 seconds ECG signal with 2800 samples we include 648 samples at the beginning and 648 samples at the end, yielding 4096 samples that are then saved in the hdf5 dataset. <br> The relation between neural-network predicted age and mortality is established in:<br> "Deep neural network estimated electrocardiographic-age as a mortality predictor"<br> Emilly M Lima, Antônio H Ribeiro, Gabriela MM Paixão, Manoel Horta Ribeiro, Marcelo M Pinto Filho, Paulo R Gomes, Derick M Oliveira, Ester C Sabino, Bruce B Duncan, Luana Giatti, Sandhi M Barreto, Wagner Meira Jr, Thomas B Schön, Antonio Luiz P Ribeiro. MedRXiv (2021) https://www.doi.org/10.1101/2021.02.19.21251232<br> <br> The companion code can be found in: https://github.com/antonior92/ecg-age-prediction The SaMi-Trop dataset is described in: "Longitudinal study of patients with chronic Chagas cardiomyopathy in Brazil (SaMi-Trop project): a cohort profile" Clareci Silva Cardoso, Ester Cerdeira Sabino, Claudia Di Lorenzo Oliveira, Lea Campos de Oliveira, Ariela Mota Ferreira, Edécio Cunha-Neto, Ana Luiza Bierrenbach, João Eduardo Ferreira, Desirée Sant'Ana Haikal, Arthur L Reingold, Antonio Luiz P Ribeiro. BMJ Open (2016);6:e011181. doi: 10.1136/bmjopen-2016-011181
DOI: 10.5281/zenodo.5710492
title: Polarization lidar data for detecting dust orientation

description: Polarization lidar data used in publication: Tsekeri, A., Amiridis, V., Louridas, A., Georgoussis, G., Freudenthaler, V., Metallinos, S., Doxastakis, G., Gasteiger, J., Siomos, N., Paschou, P., Georgiou, T., Tsaknakis, G., Evangelatos, C., and Binietoglou, I.: Polarization lidar for detecting dust orientation: System design and calibration, Atmos. Meas. Tech. Discuss. [preprint], https://doi.org/10.5194/amt-2021-30, in review, 2021.
DOI: 10.5281/zenodo.5710491
title: Polarization lidar data for detecting dust orientation

description: Polarization lidar data used in publication: Tsekeri, A., Amiridis, V., Louridas, A., Georgoussis, G., Freudenthaler, V., Metallinos, S., Doxastakis, G., Gasteiger, J., Siomos, N., Paschou, P., Georgiou, T., Tsaknakis, G., Evangelatos, C., and Binietoglou, I.: Polarization lidar for detecting dust orientation: System design and calibration, Atmos. Meas. Tech. Discuss. [preprint], https://doi.org/10.5194/amt-2021-30, in review, 2021.
DOI: 10.34740/kaggle/dsv/2826180
title: COVID Vaccination in World (updated daily)
DOI: 10.15468/fn6npe
title: Second-step lectotypification of Bauhinia khasiana Baker (Leguminosae: Caesalpinioideae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bandyopadhyay, Subir (2013): Second-step lectotypification of Bauhinia khasiana Baker (Leguminosae: Caesalpinioideae). Candollea 68 (1): 99-103, DOI: 10.15553/c2013v681a14
DOI: 10.5281/zenodo.5705505
title: In-Line Measurement of the Surface Texture of Rolls Using Long Slender Piezoresistive Microprobes

description: Raw data from the article "In-Line Measurement of the Surface Texture of Rolls Using Long Slender Piezoresistive Microprobes" published in <em>Journal of Sensors and Sensor Systems</em> on 05 Sep 2021<br> <br> All factory measurements were made with the "G" microprobe. In laboratory measurements both the "G" and "W" microprobes were used.
description: This project has received funding from the EMPIR program co-financed by the Participating States and from the European Union's Horizon 2020 research and innovation program under no. 17IND05 MicroProbes.
DOI: 10.5281/zenodo.5705504
title: In-Line Measurement of the Surface Texture of Rolls Using Long Slender Piezoresistive Microprobes

description: Raw data from the article "In-Line Measurement of the Surface Texture of Rolls Using Long Slender Piezoresistive Microprobes" published in <em>Journal of Sensors and Sensor Systems</em> on 05 Sep 2021<br> <br> All factory measurements were made with the "G" microprobe. In laboratory measurements both the "G" and "W" microprobes were used.
description: This project has received funding from the EMPIR program co-financed by the Participating States and from the European Union's Horizon 2020 research and innovation program under no. 17IND05 MicroProbes.
DOI: 10.5281/zenodo.5710420
title: 16S rDNA sequence data of research--Different periods of high-fat diet during peri-pregnancy cause variant offspring gut microbiota

description: These are the 16S rRNA gene sequencing data based on the Illumina HiSeq2500 platform. Group a, b, c, d stand for group CD-CD, CD-HFD, HFD-CD, HFD-HFD separately. Each mouse of one group had two samples such as a1_1 and a1_2.