cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/145665
title: TSG (Thermosalinograph) data collected during research cruise LMG0801 using a SeaBird SBE-21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145666
title: TSG (Thermosalinograph) data collected during research cruise LMG0801 using a SeaBird SBE-45 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.8326111
title: STEP UP project: the Weierbach dataset 2019-2020

description: Understanding the interaction between topography and vegetation across different environments is important to assess how hydrological and climatic conditions affect tree physiological activity. This becomes especially important given the expected reduction in water availability and increase in water demand driven by climate change. These extremes could enhance the thermal and hydrologic gradients along slopes. Multiple studies that investigated the effect of water limitations on forest vulnerability have neglected landscape heterogeneity at fine spatial resolutions, even though soil properties and topography are important abiotic factors for forest health (Schwantes et al., 2018). STEP-UP (Space-time patterns of tree water uptake at hillslopes with contrasting climate and geology) project aimed to investigate the spatio-temporal dynamics of water sources for beech trees (<em>Fagus sylvatica </em>L.). This species is abundant in many temperate European forest ecosystems, which could be strongly impacted by the predicted intensification of dry and wet spells (IPCC, 2023). The aim of the project is to get a better understanding of how climate, geology, and topography shape beech tree water uptake patterns along the catena by using a combination of hydro-meteorological observations, sap velocity measurements, and δ2H and δ18O measurements sampled in groundwater, soil water, and xylem water. For this purpose, we conducted a comparative study on a gentle (10 degrees) hillslope in the Weierbach catchment in Luxembourg (oceanic climate) (see Fabiani et al., 2022) and a steep (30 degrees) hillslope in the Lecciona catchment in Italy (Mediterranean climate). In this dataset, we present the data collected over 2019 and 2020 in the Weierbach catchment only. This dataset encompasses the following files: - conceptual figure named “Conceptual_figure_Weierbach_Lecciona” - daily sap velocity from three beech trees named “Weierbach_sapvelocity_2019-2020” - isotopic database (d<sup>18</sup>O and d<sup>2</sup>H) of xylem water, soil, groundwater, stream and precipitation named "Weierbach_isotopes_dataset_2019-2020" Sapflow sensors installation, maintenance and data cleaning were performed by Ginevra Fabiani and Remy Schoppach in the framework of EFFECT and STEP UP projects (AFR/STEP-UP ID 12546983 and FNR/CORE/C17/SR/11702136/EFFECT). Xylem, soil and water samples were collected, treated and analyzed by Ginevra Fabiani. Soil samples of 2020 were analyzed by Adnan Moussa. Julian Klaus, Daniele Penna and Laurent Pfister were responsible for founding acquisition and project management.
description: The authors acknowledge funding from the Luxembourg National Research Fund (FNR) (AFR/STEP-UP ID 12546983 and FNR/CORE/C17/SR/11702136/EFFECT) and the support of the Luxembourg Institute of Science and Technology (LIST).
DOI: 10.5281/zenodo.7987364
title: Repeat catalogs for TRGT

description: This dataset contains various repeat catalogs for the Tandem Repeat Genotyping Tool (TRGT): pathogenic_repeats.hg38.bed contains annotations of 56 known pathogenic repeats. polymorphic_repeats.hg38.bed contains 171,146 polymorphic repeats. The original version of this catalog was made for short reads and is distributed under CC BY-SA 4.0 license. adotto_repeats.hg38.bed contains 937,122 repeats originally released by the Genome in a Bottle tandem repeat benchmarking project 10.5281/zenodo.7226352. adotto_hprc.tdb.tar is a TRGTdb file containing alleles of repeats from the adotto_repeats.hg38.bed catalog across 100 HPRC samples. Please consider citing TRGT preprint if you are using these data.
DOI: 10.5281/zenodo.8329210
title: Repeat catalogs for TRGT

description: This dataset contains various repeat catalogs for the Tandem Repeat Genotyping Tool (TRGT): pathogenic_repeats.hg38.bed contains annotations of 56 known pathogenic repeats. polymorphic_repeats.hg38.bed contains 171,146 polymorphic repeats. The original version of this catalog was made for short reads and is distributed under CC BY-SA 4.0 license. adotto_repeats.hg38.bed contains 937,122 repeats originally released by the Genome in a Bottle tandem repeat benchmarking project 10.5281/zenodo.7226352. adotto_hprc.tdb.tar is a TRGTdb file containing alleles of repeats from the adotto_repeats.hg38.bed catalog across 100 HPRC samples. Please consider citing TRGT preprint if you are using these data.
DOI: 10.7284/145636
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise LMG0802 using a Hawaii UHDAS instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145638
title: Fluorometer data collected during research cruise LMG0802 using a WETLabs ECO-FL instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145643
title: Meteorological Station data collected during research cruise LMG0802 using a USAP RVDAS Metstation instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145644
title: Oxygen data collected during research cruise LMG0802 using a AANDERAA Optode 3975 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145645
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise LMG0802 using a LDEO pCO2 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145646
title: Radiometer data collected during research cruise LMG0802 using a Biospherical GUV-2511 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145647
title: Singlebeam Echosounder data collected during research cruise LMG0802 using a Knudsen 3260 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145648
title: Water Temperature data collected during research cruise LMG0802 using a SeaBird SBE-38 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145649
title: TSG (Thermosalinograph) data collected during research cruise LMG0802 using a SeaBird SBE-21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145650
title: TSG (Thermosalinograph) data collected during research cruise LMG0802 using a SeaBird SBE-45 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.23774586
title: Datasets and R script for Cape cobra colour analyses

description: Main datasets and reduced dataset for colour analysis to be used with R script.
DOI: 10.6084/m9.figshare.23774586.v3
title: Datasets and R script for Cape cobra colour analyses

description: Main datasets and reduced dataset for colour analysis to be used with R script.
DOI: 10.5517/ccdc.csd.cc2g00h0
title: CCDC 2264131: Experimental Crystal Structure Determination

description: Related Article: Dmitry Yufit|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g00m4
title: CCDC 2264135: Experimental Crystal Structure Determination

description: Related Article: Pierre Baillargeon, Maude Morrisette, Daniel Fortin|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g01q8
title: CCDC 2264169: Experimental Crystal Structure Determination

description: Related Article: Lixin Li, Jan L. Wikaira, Mark M. Turnbull|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.7284/145606
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise LMG0804 using a Hawaii UHDAS instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145608
title: Fluorometer data collected during research cruise LMG0804 using a WETLabs ECO-FL instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145613
title: Meteorological Station data collected during research cruise LMG0804 using a USAP RVDAS Metstation instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145614
title: Oxygen data collected during research cruise LMG0804 using a AANDERAA Optode 3975 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145615
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise LMG0804 using a LDEO pCO2 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145616
title: Radiometer data collected during research cruise LMG0804 using a Biospherical GUV-2511 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145617
title: Singlebeam Echosounder data collected during research cruise LMG0804 using a Knudsen 3260 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145618
title: Water Temperature data collected during research cruise LMG0804 using a SeaBird SBE-38 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145619
title: TSG (Thermosalinograph) data collected during research cruise LMG0804 using a SeaBird SBE-21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145620
title: TSG (Thermosalinograph) data collected during research cruise LMG0804 using a SeaBird SBE-45 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.26300/t989-e729
title: Data documentation for Implications of using administrative healthcare data to identify risk of motor vehicle crash- related injury: the importance of distinguishing crash from crash-related injury
DOI: 10.5258/soton/d2768
title: Dataset supporting the University of Southampton Doctoral Thesis "Exploring the path of gender identity development and its potential influences".

description: Dataset supporting the University of Southampton Doctoral Thesis "Exploring the path of gender identity development and its potential influences". This includes 11 transcripts of participant interviews. Data is available 'on request' only to bone fide researchers after the embargo expires 1/09/24. Please complete the attached form and return it to researchdata@soton.ac.uk
DOI: 10.5281/zenodo.7579895
title: Spatial Atlas of the Mouse Central Nervous System at Molecular Resolution

description: Spatially charting molecular cell types at single-cell resolution across the three-dimensional (3D) volume of the brain is critical for illustrating the molecular basis of the brain anatomy and functions. Single-cell RNA sequencing (scRNA-seq) has profiled molecular cell types in the mouse brain, but cannot capture their spatial organization. Here, we employed an in situ sequencing technique, STARmap PLUS, to map 1.09 million high-quality cells across the whole adult mouse brain and the spinal cord, profiling 1,022 genes at subcellular resolution with a voxel size of 194 X 194 X 345 nm3 in 3D. We developed computational pipelines to segment, cluster, and annotate 230 molecular cell types by single-cell gene expression and 106 molecular tissue regions by spatial niche gene expression. Joint analyses of molecular cell types and molecular tissue regions enabled a systematic molecular spatial cell type nomenclature and allowed the identification of tissue architectures previously undefined in established brain anatomy. To create a transcriptome-wide spatial atlas, we further integrated the STARmap PLUS measurements with a published scRNA-seq atlas, imputing 11,844 genes at the single-cell level. Finally, we delineated the tropisms of a brain-wide transgene delivery tool, AAV-PHP.eB5,6, across the molecular cell types and tissue regions of the whole mouse brain. Together, this annotated dataset provides a comprehensive, high-resolution, single-cell resource that integrates a spatial molecular atlas, cell taxonomy, brain anatomy, and genetic manipulation accessibility of the mammalian central nervous system (CNS).
DOI: 10.5281/zenodo.7579896
title: Spatial Atlas of the Mouse Central Nervous System at Molecular Resolution

description: Spatially charting molecular cell types at single-cell resolution across the three-dimensional (3D) volume of the brain is critical for illustrating the molecular basis of the brain anatomy and functions. Single-cell RNA sequencing (scRNA-seq) has profiled molecular cell types in the mouse brain, but cannot capture their spatial organization. Here, we employed an in situ sequencing technique, STARmap PLUS, to map 1.09 million high-quality cells across the whole adult mouse brain and the spinal cord, profiling 1,022 genes at subcellular resolution with a voxel size of 194 X 194 X 345 nm3 in 3D. We developed computational pipelines to segment, cluster, and annotate 230 molecular cell types by single-cell gene expression and 106 molecular tissue regions by spatial niche gene expression. Joint analyses of molecular cell types and molecular tissue regions enabled a systematic molecular spatial cell type nomenclature and allowed the identification of tissue architectures previously undefined in established brain anatomy. To create a transcriptome-wide spatial atlas, we further integrated the STARmap PLUS measurements with a published scRNA-seq atlas, imputing 11,844 genes at the single-cell level. Finally, we delineated the tropisms of a brain-wide transgene delivery tool, AAV-PHP.eB5,6, across the molecular cell types and tissue regions of the whole mouse brain. Together, this annotated dataset provides a comprehensive, high-resolution, single-cell resource that integrates a spatial molecular atlas, cell taxonomy, brain anatomy, and genetic manipulation accessibility of the mammalian central nervous system (CNS).
DOI: 10.5281/zenodo.7747583
title: Spatial Atlas of the Mouse Central Nervous System at Molecular Resolution

description: Spatially charting molecular cell types at single-cell resolution across the three-dimensional (3D) volume of the brain is critical for illustrating the molecular basis of the brain anatomy and functions. Single-cell RNA sequencing (scRNA-seq) has profiled molecular cell types in the mouse brain, but cannot capture their spatial organization. Here, we employed an in situ sequencing technique, STARmap PLUS, to map 1.09 million high-quality cells across the whole adult mouse brain and the spinal cord, profiling 1,022 genes at subcellular resolution with a voxel size of 194 X 194 X 345 nm3 in 3D. We developed computational pipelines to segment, cluster, and annotate 230 molecular cell types by single-cell gene expression and 106 molecular tissue regions by spatial niche gene expression. Joint analyses of molecular cell types and molecular tissue regions enabled a systematic molecular spatial cell type nomenclature and allowed the identification of tissue architectures previously undefined in established brain anatomy. To create a transcriptome-wide spatial atlas, we further integrated the STARmap PLUS measurements with a published scRNA-seq atlas, imputing 11,844 genes at the single-cell level. Finally, we delineated the tropisms of a brain-wide transgene delivery tool, AAV-PHP.eB5,6, across the molecular cell types and tissue regions of the whole mouse brain. Together, this annotated dataset provides a comprehensive, high-resolution, single-cell resource that integrates a spatial molecular atlas, cell taxonomy, brain anatomy, and genetic manipulation accessibility of the mammalian central nervous system (CNS).
DOI: 10.5281/zenodo.8327576
title: Spatial Atlas of the Mouse Central Nervous System at Molecular Resolution

description: Spatially charting molecular cell types at single-cell resolution across the three-dimensional (3D) volume of the brain is critical for illustrating the molecular basis of the brain anatomy and functions. Single-cell RNA sequencing (scRNA-seq) has profiled molecular cell types in the mouse brain, but cannot capture their spatial organization. Here, we employed an in situ sequencing technique, STARmap PLUS, to map 1.09 million high-quality cells across the whole adult mouse brain and the spinal cord, profiling 1,022 genes at subcellular resolution with a voxel size of 194 X 194 X 345 nm3 in 3D. We developed computational pipelines to segment, cluster, and annotate 230 molecular cell types by single-cell gene expression and 106 molecular tissue regions by spatial niche gene expression. Joint analyses of molecular cell types and molecular tissue regions enabled a systematic molecular spatial cell type nomenclature and allowed the identification of tissue architectures previously undefined in established brain anatomy. To create a transcriptome-wide spatial atlas, we further integrated the STARmap PLUS measurements with a published scRNA-seq atlas, imputing 11,844 genes at the single-cell level. Finally, we delineated the tropisms of a brain-wide transgene delivery tool, AAV-PHP.eB5,6, across the molecular cell types and tissue regions of the whole mouse brain. Together, this annotated dataset provides a comprehensive, high-resolution, single-cell resource that integrates a spatial molecular atlas, cell taxonomy, brain anatomy, and genetic manipulation accessibility of the mammalian central nervous system (CNS).
DOI: 10.6084/m9.figshare.21331284
title: Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in early-stage lung adenocarcinoma

description: Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in early-stage lung adenocarcinoma <br>
DOI: 10.7910/dvn/prcjij
title: Rapid Drought Stress Detection in Plants Using Bioimpedance Measurements and Analysis

description: Smart farming is the targeted use of phenotyping for the rapid, continuous, and accurate assessment of plant health in the field. Bioimpedance monitoring can play a role in smart farming as a phenotyping method, which is now accessible thanks to recent efforts to commoditize and miniaturize electronics. Here, we demonstrate that bioimpedance measurements reflect the physiological changes in live plant tissue with induced alterations in their environmental conditions. When plants were exposed to -1.0 MPa polyethylene glycol, to simulate drought conditions, the extracellular resistance was observed to increase prior to the intercellular resistance, where the low frequency bioimpedance measurements increased by 25\% within one hour. Similar patterns were observed when drought stress was applied to the plants by water withholding, with a bioimpedance increase within a matter of a few hours. The bioimpedance measurements were also compared with leaf relative water content, imaging, and field transpirable soil water, which reinforced these findings. These preliminary results suggest that bioimpedance can function as a phenotyping tool for continuous and real time monitoring of plant stress to allow the development of strategies to prevent damage from environmental stresses such as drought.
DOI: 10.5066/p9gr6fpu
title: Data in support of peak streamflows and flooding in select areas of Pennsylvania from the remnants of Hurricane Ida, September 1-2, 2021

description: Heavy rainfall occurred across Pennsylvania on September 1 and 2, 2021, as a result of the remnants of Hurricane Ida. Much of eastern and southcentral Pennsylvania received five to ten inches of rain and most of the rainfall occurred in a little more than six hours. Widespread substantial flooding occurred in the area, particularly impacted was the city of Philadelphia and surrounding areas. Flood frequencies were computed for 52 U.S. Geological Survey (USGS) streamgages impacted by the flooding in eastern and southcentral Pennsylvania using peak flow data through 2021. Flood documentation maps showing the extent and depth of flooding from the September 1-2, 2021, event were generated for five communities in southeastern Pennsylvania.
DOI: 10.5281/zenodo.7966668
title: Data for publication - Design, simulation and experimental analysis of a monolithic bending section for enhanced maneuverability of single use laparoscopic devices

description: The dataset contains all processed data and raw data which are used for the publication "<em>Design, simulation and experimental analysis of a monolithic bending section for enhanced maneuverability of single use laparoscopic devices</em>"
description: This work was funded by the Else Kröner Fresenius Center (EKFZ) for Digital Health and the Sächsische Aufbaubank (SAB) with resources of the European Fund
DOI: 10.5281/zenodo.7966667
title: Data for publication - Design, simulation and experimental analysis of a monolithic bending section for enhanced maneuverability of single use laparoscopic devices

description: The dataset contains all processed data and raw data which are used for the publication "<em>Design, simulation and experimental analysis of a monolithic bending section for enhanced maneuverability of single use laparoscopic devices</em>"
description: This work was funded by the Else Kröner Fresenius Center (EKFZ) for Digital Health and the Sächsische Aufbaubank (SAB) with resources of the European Fund