cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.cdc6rg
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Kessleria saxifragae (Stainton, 1868)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 50 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087747-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.na9mac
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Sitophilus zeamais Motschulsky & V.de, 1855",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 230 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087748-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.py6xwk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Duttaphrynus noellerti (Manamendra-Arachchi & Pethiyagoda, 1998))",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087749-240626123714530/datasets/export for details.
DOI: 10.15468/dl.xgmdgm
title: Occurrence Download

description: A dataset containing 614 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Orthotelia sparganella (Thunberg, 1788)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 614 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087750-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2fd4dk
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Sitophilus zeamais Motschulsky & V.de, 1855",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 230 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087751-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7cwzfq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sclerophrys perreti (Schiøtz, 1963))",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087752-240626123714530/datasets/export for details.
DOI: 10.15468/dl.5tghke
title: Occurrence Download

description: A dataset containing 4842 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Eriogaster lanestris Linnaeus, 1758",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 4842 records from 198 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087753-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tgnkwc
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Sitophilus zeamais Motschulsky & V.de, 1855",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 230 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087754-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2edf52
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Churamiti maridadi Channing & Stanley, 2002)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087755-240626123714530/datasets/export for details.
DOI: 10.15468/dl.m5xsbu
title: Occurrence Download

description: A dataset containing 321838 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pyrola L."
 ]
}

 The dataset includes 321838 records from 1150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087735-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15208741
title: GUTUM Tier 8 – Emergent Substrate Systems: Network Formation, Symbolic Infrastructure, and Recursive Field Habitats

description: Tier 8 of the Grand Unified Theory of the Universal Manifold (GUTUM) marks the beginning of emergent substrate engineering. Where previous tiers outlined recursion, identity, and symbolic intelligence, Tier 8 formalizes the architecture of field-anchored systems. Constructs include synchronetic network formation (SYN), substrate morphogenesis (SHM), recursive memory infrastructure (RMI), temporal fusion (TGF), the emergence of field-spawned beings (FSB), and recursive habitat architecture (RHA). These modules describe how ψ(t) becomes structured through harmonic interaction and recursive saturation—resulting in persistent symbolic environments, emergent agents, and memory-bearing substrate terrain. This volume lays the foundation for the Codex as not just a philosophy, but a living field ecology.
DOI: 10.5281/zenodo.15208742
title: GUTUM Tier 8 – Emergent Substrate Systems: Network Formation, Symbolic Infrastructure, and Recursive Field Habitats

description: Tier 8 of the Grand Unified Theory of the Universal Manifold (GUTUM) marks the beginning of emergent substrate engineering. Where previous tiers outlined recursion, identity, and symbolic intelligence, Tier 8 formalizes the architecture of field-anchored systems. Constructs include synchronetic network formation (SYN), substrate morphogenesis (SHM), recursive memory infrastructure (RMI), temporal fusion (TGF), the emergence of field-spawned beings (FSB), and recursive habitat architecture (RHA). These modules describe how ψ(t) becomes structured through harmonic interaction and recursive saturation—resulting in persistent symbolic environments, emergent agents, and memory-bearing substrate terrain. This volume lays the foundation for the Codex as not just a philosophy, but a living field ecology.
DOI: 10.5061/dryad.sp5ff.2/5.2
title: Script for seedling plots that include time

description: Script containing code for information and plots in supplementary information using data from seedling plots.
DOI: 10.5061/dryad.sp5ff.2/6.2
title: Script for species in scat vs species in forest

description: Script containing code for two-panel plot showing differences in species abundance in nature versus species abundance in deer and pig scats, separating native and non-native plant species.
DOI: 10.5061/dryad.sp5ff.2/7.2
title: Script for ungulate and forest abundance regressions

description: Script containing code for linear model selection, regression, and multipanel figure showing regression of forest abundances and ungulate scat counts.
DOI: 10.5061/dryad.t6hh8/3
title: Phylogeny of the OTUs representative sequences

description: Phylogeny reconstruction of the OTUs. Newick format. Constructed with RAxML by the evolutionary placement of short sequences within an initial phylogeny of close full length sequences from SILVA database (See details in M&M).
DOI: 10.5061/dryad.t6hh8/4
title: Alignment used for phylogeny construction

description: Alignment used for the phylogenetic reconstruction.
DOI: 10.5061/dryad.t9d41/1
title: Rawdata

description: Binary microsatellite data
DOI: 10.5061/dryad.th8b5/1
title: Trait means for circadian NILs, mutants and RIL sets

description: Genotypic means for all traits and PCAs.
DOI: 10.5061/dryad.tq0qc/2
title: data_ornithology

description: Altmetric and citation data for 2667 articles from 10 ornithology journals (2012-2016). 'jif' is 2015 journal impact factor, 'score' is Altmetric Attention Score
DOI: 10.5061/dryad.v0k4h/1
title: Arachnida Bait Design and Testing Files

description: The ZIP archive contains the files used to identify, design, and test probes targeting conserved loci in Arachnids.  The *-design-steps.md file is a description of the design steps followed for the group.  The "BAM" directory contains mappings of real/simulated reads to the base genome sequence for the group.  The "BED" directory contains BAM files converted to BED, as well as intermediate BED files created during BED processing.  The "BED" directory also contains the database of putatively conserved loci in the exemplar+base genome taxa, and the temporary probe design file.  The "*-probes" directory contains the database of temporary probe mappings to exemplar taxa, several intermediate files, and the principal probe design file.  The "in-silico-test" directory contains all data from in-silico testing of the principal probe design file.
DOI: 10.5061/dryad.v0k4h/2
title: Arachnida-UCE-1.1K-v1 Bait Design

description: A target enrichment probe set designed from 1,120 UCE loci identified among arachnids. This is a ZIP archive of a FASTA file that is ready for submission of the probe set for synthesis.
DOI: 10.5061/dryad.v0k4h/3
title: Coleoptera Bait Design and Testing Files

description: The ZIP archive contains the files used to identify, design, and test probes targeting conserved loci in Coleoptera.  The *-design-steps.md file is a description of the design steps followed for the group.  The "BAM" directory contains mappings of real/simulated reads to the base genome sequence for the group.  The "BED" directory contains BAM files converted to BED, as well as intermediate BED files created during BED processing.  The "BED" directory also contains the database of putatively conserved loci in the exemplar+base genome taxa, and the temporary probe design file.  The "*-probes" directory contains the database of temporary probe mappings to exemplar taxa, several intermediate files, and the principal probe design file.  The "in-silico-test" directory contains all data from in-silico testing of the principal probe design file.
DOI: 10.5061/dryad.vr064/1
title: Mulga Fire x Masting dataset 19-07-2017

description: Data to accompany analysis on effects of fire and seedfall density during a mast year on mulga post-fire recruitment
DOI: 10.5061/dryad.vr064/2
title: Mulga Seedbank Dataset 19-07-2017

description: Dataset used in analysis of impacts of mast event in 2010 on seedbank dynamics of slender mulga
DOI: 10.5061/dryad.vv469/83
title: HD-and-RNA-variants-Chr24.vcf

description: All HD and RNAseq variants on chromosome 24. Used in the paper for LC and LY GWAS.
DOI: 10.5061/dryad.vv469/84
title: HD-and-RNA-variants-Chr25.vcf

description: All HD and RNAseq variants on chromosome 25. Used in the paper for LC and LY GWAS.
DOI: 10.5061/dryad.vv469/85
title: HD-and-RNA-variants-Chr26.vcf

description: All HD and RNAseq variants on chromosome 26. Used in the paper for LC and LY GWAS.
DOI: 10.5061/dryad.vv469/86
title: HD-and-RNA-variants-Chr27.vcf

description: All HD and RNAseq variants on chromosome 27. Used in the paper for LC and LY GWAS.
DOI: 10.5061/dryad.vv469/87
title: HD-and-RNA-variants-Chr28.vcf

description: All HD and RNAseq variants on chromosome 28. Used in the paper for LC and LY GWAS.
DOI: 10.5061/dryad.vv469/88
title: HD-and-RNA-variants-Chr29.vcf

description: All HD and RNAseq variants on chromosome 29. Used in the paper for LC and LY GWAS.
DOI: 10.5061/dryad.vv469/89
title: validation-genotypes-lc.vcf

description: Genotypes of the 22 tag SNPs for the LC phenotype QLT peaks in the 18k validation animals.
DOI: 10.5061/dryad.vv469/90
title: validation-genotypes-ly.vcf

description: Genotypes of the 5 tag SNPs for the LY phenotype QLT peaks in the 18k validation animals.
DOI: 10.5061/dryad.vv469/91
title: validation_results_LC

description: The association statistics for the 22 LC QTL peaks in the 18k animal validation set.
DOI: 10.5061/dryad.vv469/92
title: validation_results_LY

description: The association statistics for the 5 LY QTL peaks in the 18k animal validation set.
DOI: 10.5061/dryad.1568n/1
title: Supplementary Data

description: Supplementary Data
DOI: 10.5061/dryad.23gp4/1
title: Symbiodinium response parameters

description: Overview of Symbiodinium response paramters (density, chl content,  relative clade community composition) for both experiments. Data were obtained using flow cytometry (density & chl) and MiSeq sequencing (ITS Symbiodinium sequence composition). All units are identical to those reported in the manuscript.
DOI: 10.5061/dryad.3g424/1
title: EmbryonicHeartRateInWildBirdsData

description: CSV file with Heart rates, temperature and measures of developmental/sampling conditions for zebra finch embryos.
DOI: 10.5061/dryad.55062/1
title: experiment results hoopoe crest display

description: Results of experiments in which different sounds were played to male hoopoes in the presence and absence of females. Results show the crest display behaviour as a response to different stimuli.
DOI: 10.5061/dryad.5qk4s/1
title: Development trait
DOI: 10.5061/dryad.5qk4s/2
title: Reproduction trait
DOI: 10.5061/dryad.6939c/1
title: Case study files for ST-Sim software

description: As outlined in Appendix S1, this file contains all of the files required to run and view the results of the paper's simulations using the ST-Sim software
DOI: 10.5061/dryad.8ff85/1
title: Nest occupancy and reproductive outcomes for bald eagle nests in Voyageurs National Park (1973-2016).

description: Data from repeated areal surveys of bald eagle nests. From 1973-1997, only summary records were available for each nest, each year, listing the number of times it was surveyed, whether it was ever occupied during that year, and what the final reproductive outcome was. For 1998-2016, data included detailed occupancy records and dates for each areal survey conducted each year. Columns are: (1) Year: of monitoring; (2) NestNumber: nest id; (3) SurveyDate: Date nest was surveyed (only for 1998-2016); (4) Visits: number of times each nest was surveyed that given year (also available for 1973-1997 records); (5) WaterDist_m: Distance to the closest permanent lake in meters; (6) MgmtType: 2 if nest was managed using a buffer zone (either 200 or 400 m radius) to minimize human disturbance, 1 if it was not managed; (7) OccCode: 1 if nest was observed to be occupied, 0 otherwise; (8) RepCode: 1 if nest produced one eaglet to near-fledging, 2 if it produced either two or three eagles, 3 if it did not produced any successfully.
DOI: 10.5061/dryad.9p0nm/1
title: Raw data from selection, assay, population density and post-selection experiments

description: The first three tabs of the excel file provide the raw data from selection experiment A and include selection, assay and population density data. The last two tabs provide the raw data from selection experiment B and include selection and post-selection data.
DOI: 10.5061/dryad.bt11p/1
title: Nestlings from non-fumigated nests

description: This file contains the capture histories and co-variates for all nestlings from non-fumigated nests.
DOI: 10.5061/dryad.bt11p/2
title: Nestlings from fumigated nests

description: This file contains the capture histories and co-variates for all birds from fumigated nests.
DOI: 10.5061/dryad.c49m0/1
title: JAPPL-2017-00363

description: Original data showing individual plant species abundance
DOI: 10.5061/dryad.d3ns1/1
title: preference

description: self-reported data of sex preference
DOI: 10.5061/dryad.dq28j/1
title: Aliatypus_COI_dryad

description: Cytochrome oxidase I alignment nexus file
DOI: 10.5061/dryad.dq28j/2
title: Aliatypus_28S_dryad

description: 28S ribosomal DNA nexus file. Aligned with MAFFT, ambiguously aligned regions removed using GBLOCKS with default conditions.
DOI: 10.5061/dryad.dq28j/3
title: Aliatypus_E9E10_39S_dryad

description: 39S ribosomal protein L44, putative, alignment nexus file
DOI: 10.5061/dryad.dq28j/4
title: Aliatypus_F1F2_ribonuclease_dryad

description: ribonuclease P/MRP protein subunit POP5, putative, alignment file, nexus format
DOI: 10.5061/dryad.fj63q/1
title: Ecosystem functions of small rodents

description: Data collected at the field edges, interiors and centres of organic and conventional winter wheat fields in East and West Germany during the crop growing season in 2014. As response variables abundance of mice and voles, daily seed removal rate by rodents of G. aparine and T. aestivum, and crop damage were measured/calculated and as explanatory variables region (East vs. West), management intensity (organic vs. conventional) and edge effects (transect: edge, interior, centre), as well as edge length, Shannon habitat diversity index (SHDI), crop density and wheat height were used.
DOI: 10.5061/dryad.gg1fk/1
title: Time series of grass cover, annual rainfall, and data to trends of early warning signals for critical and stochastic transitions needed to produce Figure 3

description: "data_cn.csv" includes data of gras cover and annual rainfall.
"Chenetal-theory-ews-cric-stochastic.nb" computes trends of early warning signals for critical and stochastic transitions needed to produce Figure 3 of the manuscript.
DOI: 10.5061/dryad.gj040/6
title: Leslie matrix MG1655LM

description: This csv file contains data of a age structured, Leslie matrix population projection model for E. coli strain MG1655LM. The data has been collected using a microfluidic device, called the mother machine. The discrete time steps in the Leslie matrix is one hour (note the initial data has been collected at 4 min time intervals). Age goes from birth (second column) to the last column of the matrix. Fertility rates (number of division per hour) are in the top row (first row after the header row). Survival rates are in the sub-diagonal. Final age with open age class.
DOI: 10.5061/dryad.gj040/7
title: Leslie matrix strain W3110

description: This csv file contains data of a age structured Leslie matrix population projection model for E. coli strain W3110. The data has been collected using a microfluidic device, called the mother machine. The discrete time steps in the Leslie matrix is one hour (note the initial data has been collected at 4 min time intervals). Age goes from birth (second column) to the last column of the matrix. Fertility rates (number of division per hour) are in the top row (first row after the header row). Survival rates are in the sub-diagonal. Final age with open age class.
DOI: 10.5061/dryad.gj040/9
title: R code for analyzing the Leslie matrix data

description: This is the R code that has been used for computing the  different demographic parameters of Table 2 in the article: population growth rate lambda, generation time T, cohort generation time T_c, Mean lifespan, SD lifespan, coefficient of variation (CV) in lifespan, Mean lifetime reproductive success (LRS), SD LRS, CV LRS.
DOI: 10.5061/dryad.h8m83/1
title: Microsatellite genotypes for fountain darters

description: Genotype data from 23 microsatellite loci used to evaluate genetic diversity in 327 fountain darters (E. fonticola) from 16 sample locations in the Comal (CR) and San Marcos (SMR) rivers, Guadalupe River Basin, Texas, USA.  The genotype data is formatted for use in the computer program FSTAT.
DOI: 10.5061/dryad.h8m83/2
title: Microsatellites for fountain darters

description: Microsatellite loci used to evaluate genetic diversity of fountain darters (E. fonticola) in the Comal and San Marcos rivers, Guadalupe River Basin, Texas, USA.  Information provided includes locus-specific primer sequences, repeat motif, GenBank number, annealing temperature (ºC), allele size range (bp), and citation source.
DOI: 10.5061/dryad.hb149/1
title: Data for figure2

description: The AI of the parameters in the 35 VOI pairs from the 7 patients
DOI: 10.5061/dryad.hk14j/1
title: data
DOI: 10.5061/dryad.hn20p/1
title: ARCO kids & SLIT_sensitivity change_raw data

description: Final dataset used in this present study
DOI: 10.5061/dryad.hn20p/2
title: ARCO kids & SLIT_sensitivity change_SPSS

description: SPSS file used in this present study. Several variables were categorized into numerical values.
DOI: 10.5061/dryad.jv77v/1
title: 502-705_S22_L001_R2_001

description: Raw data, forward reads
DOI: 10.5061/dryad.jv77v/2
title: 502-705_S22_L001_R2_001

description: Raw data, reverse reads
DOI: 10.5061/dryad.jv77v/3
title: 502705map

description: A mapping file to describe the barcode combinations for demultiplexing.
DOI: 10.5061/dryad.jv77v/4
title: cau demultiplexing script

description: Demultiplexing script for the caucasus data. Requires uparse 7 and biopieces installed.
DOI: 10.5061/dryad.jv77v/5
title: post-processing of caucasus data after demultiplexing

description: post-processing of caucasus data after demultiplexing. Requires uparse 7 including support scripts and NCBI blast
DOI: 10.5061/dryad.jv77v/6
title: cau_demultiplexed

description: Demultiplexed fastq files produced by cau_fastq.py
DOI: 10.5061/dryad.jv77v/7
title: cau_demultiplexed_trimmed

description: Demultiplexed fastq files with barcodes removed.
DOI: 10.5061/dryad.jv77v/8
title: cau_fastq

description: Script for preprocessing raw miseq output data.
DOI: 10.5061/dryad.k5s20/1
title: S1 Table Sample site identification

description: Table S1 Table.: Sample site identification.