cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.q82nn.2
title: Data from: Opposing mechanisms drive richness patterns of core and transient bird species
DOI: 10.5061/dryad.q82nn.2/1.2
title: Core and transient species richness and environmental data
DOI: 10.5061/dryad.q82nn.2/2.2
title: Analysis code
DOI: 10.5061/dryad.sk35h/1
title: Table 1 Raw Data

description: Contains the raw data for Table 1. "Sexual reproduction in A. flavus sclerotia from single strains of one mating type when incubated on sterile soil and on soil containing natural fungal populations." Includes number of sclerotia examined and percent fertile sclerotia for each replicate soil cup of each single strain and statistics for comparing the strains.
DOI: 10.5061/dryad.tf7qr/13
title: Supplementary_material1_TM_dataset

description: Traditional morphometrics dataset
DOI: 10.5061/dryad.tf7qr/14
title: Supplementary_material2_CO1_alignment

description: Cytochrome Oxidase 1 haplotype alignment
DOI: 10.5061/dryad.tf7qr/15
title: Supplementary_material3_ITS2_alignment

description: Internal transcribed spacer 2 final alignment
DOI: 10.5061/dryad.tf7qr/16
title: Supplementary_material4_AFLP_matrix

description: Final AFLP matrix of four combined primer combinations
DOI: 10.5061/dryad.tf7qr/18
title: TM character definitions

description: Definition of characters used in traditional morphometrics analysis
DOI: 10.5061/dryad.vr0kc/1
title: Wolf GPS location data from DeMars et al.

description: GPS location data from 15 wolves. This data was used to parameterize the simulation model contained in DeMars et al. Please read the README file for data attributes.
DOI: 10.5061/dryad.0mv3q/2
title: Data for papers reviewed by one male and one female reviewer.

description: This file include only manuscripts that were reviewed by exactly one male and one female reviewer. The final two columns in the file include the review scores submitted by the male and female reviewer. Manuscript IDs are anonymized independently of those in the other data file provided for this manuscript.
DOI: 10.5061/dryad.17k8j/7
title: sup_fig6

description: Supplementary figure 6.
DOI: 10.5061/dryad.17k8j/8
title: sup_fig_captions

description: Supplementary figure captions.
DOI: 10.5061/dryad.3c212/1
title: T.granulosa_microsats.arp

description: Microsatellite genotypes grouped by populations. Formatted for the program Arlequin
DOI: 10.5061/dryad.3c212/2
title: Newt_TTX.csv

description: Phenotypic data on newt TTX toxicity.
DOI: 10.5061/dryad.4df64/1
title: Flight performance 2015-11-13

description: BeeNr: ID individual; Colony: ID colony; 
Molaire: 1 or 2M sugar concentration fed as fuel for flight; 
Varroa: treatment 0= low infestation (treated with acaricide), treatment 1= high infestation (NOT treated with acaricide); 
Imidacloprid: treatment 0= control 0 microgram per Liter, treatment 1= 6 microgram per Liter imidacloprid a.i. (in 660ml sugarwater 50% per week); 
FlightDate: date of the flight(s); 
Flightday: day since start, first flight date; 
Flightmill: ID flightmill; 
N: number of rounds continuous flight; 
Distancem: Distance in meters; 
Log_Distancem: log10 Distance in meters; 
Flighttimemin: Flight time in minutes; 
Log_Flighttimemin: log10 Flight time in minutes; 
Averagems: Average speed in meters per second; 
Maxms: Maximum speed in meters per second; 
Weightmg: Weight of the bee in milligram after the flight(s); 
Winglengthmm: Winglength of front wing from the joint to tip in millimeter; 
Survivalapril14: survival of the colony in April 2014 0=alive, 1=dead;
DOI: 10.5061/dryad.4df64/2
title: Mites 2015-11-13

description: Varroa: treatment 0= low infestation (treated with acaricide), treatment 1= high infestation (NOT treated with acaricide); 
Imidacloprid: treatment 0= control 0 microgram per Liter, treatment 1= 6 microgram per Liter imidacloprid a.i. (in 660ml sugarwater 50% per week); 
Colony: ID colony; 
Succes: 0=group that did not fly, 1=groep that did succesfully fly; 
numberofbees: Number of individuals that was tested; 
Mitesgrambees: Number of phoretic mites per gram bees in October 2013; 
LNmites: Natural log of (number of mites per gram bees + 0.01);
DOI: 10.5061/dryad.4df64/3
title: Weights and Wings 2015-11-13

description: BeeNr: ID individual; 
Colony: ID colony; 
Varroa: treatment 0= low infestation (treated with acaricide), treatment 1= high infestation (NOT treated with acaricide); 
Imidacloprid: treatment 0= control 0 microgram per Liter, treatment 1= 6 microgram per Liter imidacloprid a.i. (in 660ml sugarwater 50% per week); 
Flightmill: ID flightmill; 
Weightmg: Weight of the bee in milligram after the flight(s); 
Abdomenmg: Weight of the bee's abdomen in milligram after the flight(s); 
Thoraxmg: Weight of the bee's thorax in milligram after the flight(s); 
Winglengthmm: Winglength of front wing from basicosta to tip in millimeter;
DOI: 10.5061/dryad.4df64/4
title: Successful flights 2015-11-13

description: File contains the data for the Chi-square test on the comparison of the number of bees that successfully flew the first and second flight.
DOI: 10.5061/dryad.4q7m6/1
title: Reciprocal Transplant Generation 30
DOI: 10.5061/dryad.4q7m6/2
title: Reciprocal Transplant Generation 100
DOI: 10.5061/dryad.4q7m6/3
title: Assortative Mating Generation 100
DOI: 10.5061/dryad.4q7m6/4
title: Assortative Mating Generation 30
DOI: 10.5061/dryad.4q7m6/5
title: Assortative Mating Generation 64
DOI: 10.5061/dryad.4q7m6/6
title: Reciprocal Transplant Generation 64
DOI: 10.5061/dryad.4q7m6/7
title: Line Cross Generation 64
DOI: 10.5061/dryad.55758/1
title: Temporal dynamics for the 32 species

description: Temporal dynamics for the 32 species between 8 consecutives time periods at 794 sites across the French hydrographic network.
DOI: 10.5061/dryad.55758/2
title: Environmental characteristics of the sites

description: Spatial and environmental characteristics of the 794 sites.
DOI: 10.5061/dryad.55758/3
title: Dataset 1980-1991

description: Temporally independent dataset composed of 3347 sites collected before major climatic changes (1980-1991)
DOI: 10.5061/dryad.55758/4
title: SpeciesCodes
DOI: 10.5061/dryad.5k84d/1
title: summary data from simulation model

description: These data are the average percent of real loci and the average number of spurious loci detected given the various parameter combinations tested by the model.
DOI: 10.5061/dryad.5k84d/2
title: multiple populations comparison

description: This data contains Fst values for loci in replicate populations with the same QTLs, which were: chrom 0: 702, 978; chrom 1: 516, 341; chrom 2: 878, 76; chrom 3: 46, 153.
DOI: 10.5061/dryad.5k84d/3
title: populations

description: Header file for C++ simulation program
DOI: 10.5061/dryad.5k84d/4
title: life_cycle

description: C++ program file for simulation model
DOI: 10.5061/dryad.5k84d/5
title: chi_square

description: Header file containing functions to calculate chi-square p-values for C++ simulation model.
DOI: 10.5061/dryad.68s75/1
title: CricketData

description: Please refer to the ReadMe file for a detailed description of the data.
DOI: 10.5061/dryad.6d3h7/1
title: Exp_1A_survival of Erica tetralix

description: Plant survival (a or d for alive or dead) at 20 weeks, following treatments: control (no treatment); fungus (isolate of axenically-grown Pezoloma ericae); or liverwort (bearing ericoid inoculum)
DOI: 10.5061/dryad.760r8/1
title: Data for each of the 4 classifiers

description: There are 4 sheets in the excel file. Each sheet contains the data used for each one of the 4 classifiers. Classifier 1 - Species-level without a hierarchy. Classifier 2 - Species-level within a family hierarchy. Classifier 3 - Species-level within a genus hierarchy. Classifier 4 - Species-level within a guild hierarchy. The species acronyms can be found in the supplementary material of the paper. The column ‘Fold’ indicates to which one of the 5 folds each call was assigned for the 5-folds cross-validation procedure used to estimate the accuracy of each classifier.
DOI: 10.5061/dryad.7tv21/1
title: Southern Newfoundland Atlantic Salmon microsatellite data

description: Atlantic salmon microsatellite data, for 2439 individuals, with an average of 78.7 individuals per population
DOI: 10.5061/dryad.7tv21/3
title: Atlantic salmon RAD-seq data VCF format

description: VCF file for Atlantic salmon RAD-seq data from southern Newfoundland populations
DOI: 10.5061/dryad.7tv21/4
title: Distance matrices

description: Genetic and geographic distance matrices
DOI: 10.5061/dryad.7tv21/6
title: SNP Array genotype data

description: SNP array genotypes for 5,568 SNP loci collected with the V2 Atlantic salmon SNP-array developed by the Centre for Integrative Genetics (CIGENE, Norway) using the Illumina infinium assay (Illumina, San Diego, CA, USA) following the manufacturer’s instructions. A total 203 individuals were genotyped from 10 populations, with an average of 20 individuals per population
DOI: 10.5061/dryad.817h6/1
title: STEM LOCATIONS AND HEIGHTS IN ULU MENDARAM

description: THE STEM LOCATIONS AND HEIGHTS WERE EXTRACTED USING LOCAL MAXIMA FILTERING FROM A CANOPY HEIGHT MODEL AT 0.5M. THE CANOPY HEIGHT MODEL WAS PRODUCED USING SMALL FOOTPRINT AIRBORNE LIDAR DATA ACQUIRED IN 2010 OVER BRUNEI.
DOI: 10.5061/dryad.817h6/2
title: Mendaram live tree survey 2014

description: Csv contaning biometric data for live trees in Mendaram, Belait, Brunei.
DOI: 10.5061/dryad.dd3qs/1
title: ND2 haplotype alignemt of the pine siskin and black-capped siskin complex

description: Spinus pinus, Spinus atriceps and Spinus notatus haplotype alignment; NADH dehydrogenase subunit 2  (ND2) gene, partial cds; mitochondrial
DOI: 10.5061/dryad.dd3qs/2
title: ATP haplotype alignemt of the pine siskin and black-capped siskin complex

description: Spinus pinus, Spinus atriceps and Spinus notatus haplotype alignment; cytochrome c oxidase subunit II gene, partial cds; tRNA-Lys gene, complete sequence; ATP synthase 8 gene, complete cds; and ATP synthase 6 gene, partial cds; mitochondrial
DOI: 10.5061/dryad.j4489/1
title: Nucleotide alignment supporting phylogeny

description: Nucleotide sequence alignment of matK used for generating RAxML phylogeny of the Orchidaceae.
DOI: 10.5061/dryad.m57sd/10
title: S05_MEG

description: Subject 5. Data from one session (MEG only).
DOI: 10.5061/dryad.m57sd/11
title: S06_EEG

description: Subject 6. Data from one session (MEG+EEG).
DOI: 10.5061/dryad.m57sd/12
title: S06_MEG

description: Subject 6. Data from one session (MEG only).
DOI: 10.5061/dryad.m57sd/13
title: S07_EEG

description: Subject 7. Data from one session (MEG+EEG).
DOI: 10.5061/dryad.m57sd/4
title: S02_MEG

description: Subject 2. Data from one session (MEG only).
DOI: 10.5061/dryad.m57sd/5
title: S03_EEG

description: Subject 3. Data from one session (MEG+EEG).
DOI: 10.5061/dryad.m57sd/6
title: S03_MEG

description: Subject 3. Data from one session (MEG only).
DOI: 10.5061/dryad.m57sd/7
title: S04_EEG

description: Subject 4. Data from one session (MEG+EEG).
DOI: 10.5061/dryad.m57sd/8
title: S04_MEG

description: Subject 4. Data from one session (MEG only).
DOI: 10.5061/dryad.m57sd/9
title: S05_EEG

description: Subject 5. Data from one session (MEG+EEG).
DOI: 10.5061/dryad.ps04c/7
title: Coghlan et al 2015 fasta files

description: Fasta files for mitochondrial and plant chloroplast DNA sequenced in this study
DOI: 10.5061/dryad.r9c12/1
title: Inga_transcriptomes

description: Trinity assemblies of transcriptomes from expanding young leaves of Inga umbellifera (BCI_104), Inga sapindoides (BCI_97) and Inga spectabilis (BCI_190)
DOI: 10.5061/dryad.r9c12/2
title: Inga_phylogenies.tar

description: Phylogenies generated with the bait captured data, Sanger sequence and plastid data.
DOI: 10.5061/dryad.r9c12/3
title: Inga_sequence.tar

description: Sequences assembled from captures reads.  Nexus files as used to generate the phylogenies.
DOI: 10.5061/dryad.sk35h/2
title: Table 3 Raw Data

description: Contains the raw data for Table 3. "Reciprocal crosses in A. flavus in which single-strain sclerotia were incubated on sterilized soil inoculated with conidia." Includes number of sclerotia examined and percent fertile sclerotia for each replicate soil cup of each cross and statistics for comparing the strains.
DOI: 10.5061/dryad.sk35h/3
title: Table 4 Raw Data

description: Contains the raw data for Table 4. "Sexual reproduction in A. flavus sclerotia obtained from crosses and incubated under laboratory conditions." Includes number of sclerotia examined and percent fertile sclerotia for each replicate of each single strain and statistics for comparing the strains.
DOI: 10.5061/dryad.sk35h/4
title: Table 6 Raw Data

description: Contains the raw data for Table 6. "Soil populations of Aspergillus section Flavi species (CFU/g) in fields prior to application of A. flavus sclerotia.." Includes concentrations (CFU/g) for each species examined from five soil samples taken from Field A, Field B, and Field C and statistics for comparing the concentrations for each field.
DOI: 10.5061/dryad.sk35h/5
title: Table S1 Raw Data

description: Contains the raw data for S1 Table. "Weather conditions at three fields (2013-2014) where single-strain and fertilized sclerotia of A. flavus were applied." Includes the daily minimum, maximum, and mean temperature for Field A, Field B, and Field C from August 16th, 2013 til August 15th, 2014. Contains ANOVA results for comparison between the Fields for minimum, maximum, and mean temperatures from each month.
DOI: 10.5061/dryad.sk35h/6
title: NRRL29537_and_NRRL29536_progeny_AF-MIT-1

description: Fasta file containing the aligned sequences that distinguish mitochondrial inheritance in the progeny of NRRL 29537 and NRRL 29536. Corresponds to the primer pair AF-MIT-1 (F: TGAAGCAACTGGATTATTCGCA, R: AAACCACATTCAAAAGCGCT).
DOI: 10.5061/dryad.sk35h/7
title: NRRL29507_and_NRRL21882_progeny_AF-MIT-3

description: Fasta file containing the aligned sequences that distinguish mitochondrial inheritance in the progeny of NRRL 29507 and NRRL 21882. Corresponds to the primer pair AF-MIT-3 (F: AGCAGAGGGTTCTGCGTTT, R: GCAGATCAACCTGCTAATAATATTCC).
DOI: 10.5061/dryad.sk35h/8
title: NRRL29473_and_AF36_progeny_AF-MIT-4

description: Fasta file containing the aligned sequences that distinguish mitochondrial inheritance in the progeny of NRRL 29473 and AF36. Corresponds to the primer pair AF-MIT-4 (F: GCTAAAGTTATAGGAGGTGAAGT, R: GCAACCTTTAGCTTCAATAAACCC).
DOI: 10.5061/dryad.tf7qr/19
title: Optimized AFLP scoring parameters

description: Optimized parameters used for the final scoring of the amplified fragment-length polymorphism profiles. The four dyes (FAM, HEX, NED and PET) represent four different primer combinations.
DOI: 10.5061/dryad.tf7qr/20
title: Results of NewHybrids - engiadina group

description: Results of the hybrid test conducted in New Hybrids based on 466 amplified fragment-length polymorphism markers for the M. engiadina species group. Individuals were defined as parental species (z1 or z0) or putative hybrids (unknowns; highlighted red). Columns 4 to 9 represent six admixture classes and values are the posterior probabilities of belonging to one of these classes for each individual. P1 = parental species 1; P2 = parental species 2; F1 = first-generation hybrid; F2 = second-generation hybrid; BX1 = backcross to parental species 1; BX2 = backcross to parental species 2. (a) Machilis rubrofusca and sexual M. ticinensis as parental species and just M. engiadina as unknowns. (b) Machilis rubrofusca and sexual M. ticinensis as parental species and all other members of the M. engiadina species group as unknowns.
DOI: 10.5061/dryad.tf7qr/21
title: Results of NewHybrids - helleri group

description: Results of the pairwise hybrid test conducted in NewHybrids based on 466 amplified fragment-length polymorphism markers for the M. helleri species group. Individuals were defined as parental species (z1 or z0) or putative hybrids (unknowns; highlighted red). Columns 4 to 9 represent six admixture classes and values are the posterior probabilities of belonging to one of these classes for each individual. P1 = parental species 1; P2 = parental species 2; F1 = first-generation hybrid; F2 = second-generation hybrid; BX1 = backcross to parental species 1; BX2 = backcross to parental species 2. (a) Machilis hrabei vs. M. helleri; note that individual #25 is likely a F2 hybrid even though no mito-nuclear discordance was found (see Discussion). (b) Machilis hrabei vs. M. lehnhoferi. (c) Machilis lehnhoferi vs. M. helleri.
DOI: 10.5061/dryad.tf7qr/22
title: Optimal combinations of TM characters

description: Optimal combination of traditional morphometrics characters (identified by an exhaustive search) giving the highest classification rate in each species group.
DOI: 10.5061/dryad.tf7qr/24
title: NJ trees of individual AFLP primer combinations

description: NJ trees for each of the four primer combinations (each represented by the four dyes FAM, HEX, NED, and PET) used to produce amplified fragment-length polymorphism profiles. Sample names include the following information: ’plate number’_’well number’_’specimen ID’_’species code’.
DOI: 10.5061/dryad.tf7qr/25
title: Reanalysis of traditional morphometric characters.

description: Principal component analysis (PCA) scatterplots based on optimal character combinations for each of the four species groups. Whenever available, type specimens were included and are represented by stars.
DOI: 10.5061/dryad.tf7qr/30
title: List of specimens

description: List of specimens used in this study, including voucher IDs, sampling locality, GPS coordinates of sampling sites, GenBank accessions, and information whether an individual was included (1) in the traditional morphometrics (TM) and / or amplified fragment-length polymorphism (AFLP) dataset. The fifteen specimens of M. cryptoglacialis sp. n. that were listed in Dejaco et al. (2012) under M. glacialis are highlighted with bold letters.
DOI: 10.5061/dryad.tf7qr/31
title: Reanalysis of TM characters including type specimens

description: Reanalysis of traditional morphometric characters for discriminating among final species hypotheses and classifying type specimens (when available). Classification results based on discriminant functions calculated from an optimal combination of characters (see Table S6 for details), separately for four species groups. We defined these groups according to ovipositor length (i.e., number of articles on gonapophysis VIII). This corresponded to the first steps in the Machilis identification key of Palissa (1964). Type specimens were not included in the training set. Classification success is given as the actual number (absolute) and the percentage (%) of individuals classified in original and leave-one-out cross-validated (LOOCV) discriminant analyses. Correct and wrong classifications are highlighted in green and red, respectively. dis = M. distincta, eng = M. engiadina, rub = M. rubrofusca, tic = M. ticinensis, tir = M. tirolensis, vag = M. vagans, spE = M. sp. E, spF = M. sp. F.
DOI: 10.5061/dryad.vq58f/1
title: HDSS-Dogs_SA_2012-2013

description: This dataset presents data from a Health and Demographic Surveillance System in Dogs (HDSS-Dogs) in Hluvukani settlement in Bushbuckridge Local Municipality, Mpumalanga Province, South Africa, from 1st January 2012 through 1st January 2014. Each row represents one residence episode for a dog in a household or ‘stand’ (a plot or parcel of land). Residence episodes within households begin with birth or in-migration (e.g. purchase or receipt of a dog), and terminate with death or out-migration (e.g. sale or gifting of dog to another household). Data collected are all owner-reported, collected by the study team during regular, repeat visits every 4-6 months (‘rounds’) to all households in the demographic surveillance area.
DOI: 10.5061/dryad.1qc3q/1
title: mitofitnessFinalCDM

description: Excel file with fitness scores from mitonuclear genotypes
DOI: 10.5061/dryad.1s88t/1
title: R. rattus alleles_genepop format

description: Microsatellite data for study species in Genpop format
DOI: 10.5061/dryad.20kq0/1
title: Oroboros data files

description: Oroboros Instruments DatLab Data (DLD) files.
DOI: 10.5061/dryad.2gs59/1
title: Data for Hennion et al. JEcol-2015

description: Data on source neighbourhood and amine composition and contents
DOI: 10.5061/dryad.4754j/1
title: PV_ICData1

description: Current-clamp data for PV cells (Set 1 of 3)
DOI: 10.5061/dryad.4754j/2
title: PV_ICData2

description: Current-clamp data for PV cells (Set 1 of 3)
DOI: 10.5061/dryad.4754j/3
title: PV_ICData3

description: Current-clamp data for PV cells (Set 3 of 3)
DOI: 10.5061/dryad.4754j/4
title: PV_IC_Subthreshold

description: Current-clamp Subthreshold data for PV cells
DOI: 10.5061/dryad.4754j/5
title: PV_VC+10Data

description: Voltage-Clamp Data at +10mV for PV cells
DOI: 10.5061/dryad.4n5h7/1
title: All Arrays Seed Packets and fungi_for Dryad

description: All Arrays Seed Packets and fungi_for Dryad.txtThis datafile includes the numbers and sizes of protocorms recovered from seedpackets placed at varying distances from conspecific plants and the abundance of fungi associated with those seedpackets. Missing data are indicated by a “.”. Data were collected by Melissa McCormick, Robert Burnett, and Dennis Whigham. Questions should be directed to Melissa McCormick.Column headingsSpecies: The orchid species of seeds added to the plot in seedpacket.  Goodyera=Goodyera pubescens; Liparis=Liparis liliifolia; Tipularia=Tipularia discolorPlot: Designates which of the arrays (e.g., BPLg) seed packets were recovered from. The array names also indicate whether the array was associated with a cluster of plants, in which case it ends in ‘Lg’, or an isolated plant, in which case the name ends in ‘i’. The plots were in forest stands that ranged from 70 to 150 years old at the Smithsonian Environmental Research Center, Edgewater, Maryland, USA.Distance: Indicates the distance (in cm) from the seedpacket to the nearest conspecific plant.Direction: Indicates which ‘arm’ of the array the seed packet was located on.  ‘Arms’ were oriented based on cardinal directions and are noted as n=north, s=south, e=east, w=west.Protocorms: Indicates the number of protocorms recovered from each seedpacket.Size (mm): Indicates the size in mm of the largest protocorm found in each seedpacket. A ‘.’ indicates no protocorms were recovered from a seedpacket.Fungus Abundance: Indicates the abundance of appropriate mycorrhizal fungi in the soil associated with each seedpacket. Abundance is noted as 0=absent or 1-5=present, with 5 indicating the greatest abundance and 1 the least. Abundance was measured semi-quantitatively from the sum of ARISA peak heights for two microsatellite primers (Goodyera) or the brightness of gel bands using taxon-specific primers (Liparis, Tipularia).
DOI: 10.5061/dryad.4q7m6/8
title: Line Cross Generation 100
DOI: 10.5061/dryad.4sh70.1
title: Data from: De novo sequencing and assembly of Azadirachta indica fruit transcriptome
DOI: 10.5061/dryad.4sh70.2
title: Data from: De novo sequencing and assembly of Azadirachta indica fruit transcriptome
DOI: 10.5061/dryad.4sh70.2/1.2
title: Neem_Fruit_CurrentScience_2011_Supplementary_file_1

description: Supplementary Files described in the manuscript http://www.currentscience.ac.in/Volumes/101/12/1553.pdf
DOI: 10.5061/dryad.4sh70.2/2.2
title: fruit_R1.fastq
DOI: 10.5061/dryad.4sh70.2/3.2
title: fruit_R2.fastq
DOI: 10.5061/dryad.5hn8n/1
title: Abundance data of San Lorenzo arthropods in Panama
DOI: 10.5061/dryad.5k84d/7
title: Simulation_Data

description: All summary data from the simulation model (the average number of real and spurious peaks for all parameter combinations).
DOI: 10.5061/dryad.5rg72/1
title: COGU

description: subset of 1 Common guillemot behavioural data recorded with accelerometer tags.