cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4121/uuid:6c704207-823e-4759-83df-473a57f5f5e9
title: Data underlying the publication: Cyclist Reynolds number effects and drag crisis distribution

description: This data set contains the underlying data to the figures in the paper titled 'Cyclist Reynolds number effects and drag crisis distribution'. For figures 5, 9, 12 and 14 Matlab .fig files are provided. For the figures containing velocity contours and iso-surfaces the full velocity field at the five freestream speeds are provided. These .dat files can be uploaded into, among others, Tecplot. The geometry of the bike and cyclist are provided in .stl format and can be uploaded into Tecplot as well. Note that the resolution of the cyclist model has been significantly reduced on purpose and, hence, only the general shape can be recognized.
DOI: 10.4121/uuid:c12affd8-779c-47e4-a93c-ea0afb939237
title: Field data of "Monitoring forest phenology and leaf area index with the autonomous, low-cost transmittance sensor PASTiS-57"

description: Land Surface Phenology (LSP) and Leaf Area Index (LAI) are important variables that describe the photosynthetically active phase and capacity of vegetation. Both are derived on the global scale from optical satellite sensors and require robust validation based on in situ sensors at high temporal resolution. This study assesses the PAI Autonomous System from Transmittance Sensors at 57? (PASTiS-57) instrument as a low-cost transmittance sensor for simultaneous monitoring of LSP and LAI in forest ecosystems. In a field experiment, spring leaf flush and autumn senescence in a Dutch beech forest were observed with PASTiS-57 and illumination independent, multi-temporal Terrestrial Laser Scanning (TLS) measurements in five plots. Both time series agreed to less than a day in Start Of Season (SOS) and End Of Season (EOS). LAI magnitude was strongly correlated with a Pearson correlation coefficient of 0.98. PASTiS-57 summer and winter LAI were on average 0.41m2m-2 and 1.43m2m-2 lower than TLS. This can be explained by previously reported overestimation of TLS. Additionally, PASTiS-57 was implemented in the Discrete Anisotropic Radiative Transfer (DART) Radiative Transfer Model (RTM) model for sensitivity analysis. This confirmed the robustness of the retrieval with respect to non-structural canopy properties and illumination conditions. Generally, PASTiS-57 fulfilled the CEOS LPV requirement of 20% accuracy in LAI for a wide range of biochemical and illumination conditions for turbid medium canopies. However, canopy non-randomness in discrete tree models led to strong biases. Overall, PASTiS-57 demonstrated the potential of autonomous devices for monitoring of phenology and LAI at daily temporal resolution as required for validation of satellite products that can be derived from ESA Copernicus’ optical missions, Sentinel-2 and -3.
DOI: 10.4121/uuid:d7f99f4f-28f3-4767-86a4-a6d110f26d63
title: Supporting Information for the publication: Climate-dependent Sediment Composition and Transport of the Mountainous Rivers in Tectonically Stable, Subtropical East Asia

description: This supporting information includes four supporting tables (Table S1–S4). Table S1 shows sample information in this study and Tables S2–S4 show raw data of Sr-Nd isotopes, petrography, and heavy minerals. Sr-Nd isotopes were analyzed using a Neptune plus MC-ICP-MS at Tongji University. The 63–500 μm fractions of river sands were impregnated with araldite, cut into standard thin sections for petrography analysis and heavy minerals were separated by heavy liquid tribromomethane from the 63–250 μm fractions of the river sands. All the point-counting data were obtained under a Leica polarizing microscope at Xiamen University.
DOI: 10.4121/uuid:e56a586a-cd72-466a-874d-1c71dbe01b69
title: Seasonal variation in the diet of estuarine bivalves - stable isotope analysis

description: Stable carbon and nitrogen isotopes of several estuarine bivalves collected on the tidal flats of the Balgzand an intertidal region of the western Dutch Wadden Sea
DOI: 10.4121/uuid:63d2d5f0-a4bd-4a08-8f56-a76442423fe4
title: Data presented in the paper "Consumer and host body size effects on the removal of trematode cercariae by ambient communities"

description: Research objective: Parasite transmission can be altered via the removal of parasites by the ambient communities in which parasite–host interactions take place. However, the mechanisms driving parasite removal remain poorly understood. Using marine trematode cercariae as a model system, we investigated the effects of consumer and host body size on parasite removal rates. In laboratory experiments, the cercarial removal rates of five size categories of consumers (shrimps, crabs, oysters) or hosts (cockles) were determined. In addition, a sixth treatment without consumers or hosts served as a control to account for potential losses of cercariae due other factors and to test for the presence of an overall removal effect (control vs. size treatments).For more detail see publication.
DOI: 10.4121/uuid:eef40ff9-8ec4-40e4-9256-db0199eedbac
title: Data collected during an investigation into The preference for potential in competence, not in morality

description: The current study examined the effect of a group’s potential for improvement and decline in morality and competence on applicants’ willingness to join the group.
DOI: 10.4121/uuid:6f4eb6f2-1cd8-4250-a50b-035ce8d9729a
title: Open Government Data Initiatives

description: The data includes the goals of different Open Government Data Initiatives all over the world. It also contains information about the level to which these goals are achieved. Next to that the data contains info about the specific initiatives including the geographical level and the involved actors.
DOI: 10.4121/uuid:ce6e39d9-ff27-458f-b519-ced6f0d937e3
title: Gelling of barramundi (Lates calcarifer) minced muscle as affected by high pressure processing at different temperatures and salt concentrations

description: Data set of the research "Gelling of barramundi (Lates calcarifer) minced muscle as affected by high pressure processing at different temperatures and salt concentrations"
DOI: 10.4121/uuid:1c3e2670-b1b2-43b4-aa61-0a0f3afa71f5
title: High resolution figures to "Tunable order in alginate/graphene biopolymer nanocomposites"

description: High resolution figures, draft manuscript with legends to the figures and supporting information.
DOI: 10.4121/uuid:36c00955-5574-44d9-9b26-340f7a1ea03b
title: Artifact for Automated Verification of Parallel Nested DFS, TACAS’20

description: This dataset contains the artifact for our TACAS'20 article titled: Automated Verification of Parallel Nested DFS. More specifically, it contains the VerCors implementation of the parallel NDFS algorithm described in Section 3 of the paper, as well as the two optimisations of parallel NDFS described in Section 4. It also contains a release of VerCors for verifying these three implementations.
DOI: 10.4121/uuid:297ccf24-83b9-47f3-8f8f-753878a3e5bd
title: Testing of the TU Delft DIY Wave Buoy performance under simulated wind wave conditions

description: Data of TU Delft DIY Wave Buoy simulated in different wind wave conditions in wave flume to evaluate performance. Obtained as part of a Bachelor thesis Civil Engineering at TU Delft.
DOI: 10.4121/uuid:65d6ebd5-3691-43a6-9dcd-1ef4eec4d084
title: Supporting data for the publication: Global impacts of meat trade on in-stream organic river pollution: importance of spatially distributed hydrological conditions'

description: Data for paper 'Global impacts of meat trade on in-stream organic river pollution: importance of spatially distributed hydrological conditions'
DOI: 10.4121/uuid:cbd757cc-7a73-4426-b063-213ad8327609
title: Experiments on scour holes in heterogeneous subsoil

description: This study is conducted to improve knowledge of scour holes in heterogeneous subsoil. A highly simplified situation is used for these experiments. An oval shaped hole was present in a concrete bed, from which sand can erode. So the scour hole was bounded by rigid edges made of concrete. Lasers were to measure the scour depth in the centre line of the scour hole. This was done for different experimental configurations to investigate the influence of water depth, flow velocity and the size of the geometry on scour hole development. Also velocity measurements have been executed. The most important data are laser measurements in the centre line and data of the deepest point per measurement over time.
DOI: 10.4121/uuid:93f522d5-6a62-4d97-acef-963eb0c509c0
title: Supporting data and code for the publication: Organic pollution of rivers: Combined threats of urbanization, livestock farming and global climate change.

description: Code and data for 'Organic pollution of rivers: Combined threats of urbanization, livestock farming and global climate change'
DOI: 10.4121/uuid:e3071a50-7310-4609-95a1-6f8e69e556e2
title: Rate-of-change

description: Ultrasonic monitoring of three unconfined compressive strength tests, for the analysis of Coda-Wave Interferometry type methods.
DOI: 10.4121/uuid:110aaedc-67f0-43e3-9d54-a8b8d3334894
title: Bi-dispersed by size MercuryCG analysis files from paper entitled 'Modeling of particle size segregation: calibration using the discrete particle method'

description: Coarse grained fields (i.e MercuryCG) for simulations on bi-dispersed by size data-sets used for the figures. Note: the raw DPM is not currently included.
DOI: 10.4121/uuid:1557476e-bc0e-4c64-9d41-5957d71a501f
title: Circularity game presenter

description: The Circularity game presenter is the presenting alternative for a poster or video. It is an interactive demo program, created in the Justinmind wireframe prototyper software. It presents the design which is part of the master thesis: The Circularity Game, Improving the Circularity Deck through gamification.
DOI: 10.4121/uuid:7688100c-971b-485f-838f-ab752a7154df
title: Data underlying the research into Experimental study on seismic performance of lightweight steel-desert sand lightweight aggregate concrete composite shear wall

description: The dataset includes the experimenta and numerical simulation data of Experimental Study on Seismic Performance of Lightweight Steel-Desert Sand Lightweight Aggregate Concrete Composite Shear Wall
DOI: 10.4121/uuid:79a2325b-0443-471f-a09c-5e425e8bc2fd
title: KUSTGENESE2.0/SEAWAD Multiprobe Suspended Sediment Concentration and Chlorofyl

description: Suspended Sediment Concentration and Chlorofyl.
DOI: 10.4121/uuid:7e12e8b0-ed14-4670-8291-84b6ecb07306
title: Results of Empathy and Resilience questionnaire- before and after the medical humanities programme

description: 23 Medical students were exposed to a medical humanities programme over a year and completed an empathy and resilience questionnaires before and after the course. They were compared to a control group of 18 students who were not exposed to the humanities teaching programme and who also completed the empathy and resilience questionnaire at the beginning and end of the year
DOI: 10.4121/uuid:b68e3971-c73e-4d7f-b52f-9ef7d7fe1ed2
title: Regional soil moisture monitoring network in the Raam catchment in the Netherlands - 2018-04 / 2019-04

description: The Raam soil moisture measurement network dataset contains soil moisture and soil temperature measurements for 15 locations in the Raam, which is a 223-km2 river catchment in the southeast of the Netherlands. The network monitors soil moisture in the unsaturated zone for different soil textures and land covers present in the area, and it covers the topographic gradient of the region. At each location we installed Decagon 5TM sensors at depths of 5 cm, 10 cm, 20 cm, 40 cm and 80 cm. The logging time interval is set on 15 minutes. The Raam network is operational since April 2016 and is measurements are on-going. In ‘additional_datasets.txt’ we describe additional datasets which are freely available for the Raam catchment (elevation, soil physical, land use, groundwater level and meteorological data).
DOI: 10.4121/uuid:53c9992f-d004-4d26-a3cd-789c524fe35c
title: Data underlying the research of Evolutionary and reverse engineering of single vitamin requirement in Saccharomyces cerevisiae.

description: The popular Saccharomyces cerevisiae laboratory strain CEN.PK113-7D is regularly grown in chemically defined also referred to synthetic media (SM) that contain a set of organic compounds known as class B vitamins to support fast growth. While previous work showed how specific vitamin requirements could be eliminated through directed evolution, this approach is still limited to the biotin requirement. In this study, the CEN.PK113-7D vitamin requirements were evaluated and showed that growth was suboptimal upon omission of thiamine, pyridoxine, para-aminobenzoic acid, pantothenic acid, inositol, or nicotinic acid. The S. cerevisiae strain was then evolved for fast growth in the absence of one of the vitamins. In all evolution lines, strains reached growth rates comparable to those of the strain grown in the presence of the vitamin. After few generations on medium without myo-inositol, nicotinic acid or pABA, CEN.PK113-7D exhibited fast prototrophic growth, conversely evolution for thiamine, pyridoxine and pantothenate had to be prolonged for over 300 generations. The genome of evolved single-colony isolates was re-sequenced and non-synonymous mutations identified. A subset of the mutations was selected and reintroduced using CRISPR/Cas9 in the naïve background strain. A limited number of mutations were necessary to reverse-engineer the parent strain into a single vitamin prototroph revealing a new aspect of vitamin metabolism and its regulation. These results pave the way towards the design of a cheap and entirely mineral media that would have to be complemented with a carbon source only. Measurement data collected and plotted in Figures 2, 3 and 7 are provided
DOI: 10.4121/uuid:6af1d9de-281f-4221-b7e1-e7c01b90dfe0
title: Chemically Standardized Dataset of 512 Kinases for Statistical Modeling

description: Compound dataset consisting of structures and bioactivity data (classes) for 512 kinases. Chemical structures are available as InChIKey and bioactivity data as either active (pChEMBL &gt;= 6.5) or inactive (pChEMBL &lt; 6.5) (the meaning of the pChEMBL value can be found on: https://www.ebi.ac.uk/chembl/). The compound structures are chemically standardised by neutralising charges, removing salts, and keeping the largest fragment. The dataset was used in training and validation of statistical models (QSAR and PCM).
DOI: 10.4121/uuid:9e61b6a6-88e5-4a18-ba19-dbf1bbdd656a
title: Induced-Fit Protein Structures for LKB1, MKNK1, and S6K

description: Protein structures for kinases LKB1, MKNK1, and S6K, which were constructed using induced-fit docking. These structures were used in computational modelling of kinase inhibitors. The protein structures were computationally created based on crystal structures by induced-fit docking of known ligands for these proteins. The protein structures were used in the context of medicinal chemistry and drug discovery.
DOI: 10.4121/uuid:5c8ea40a-19d5-4ecb-893a-c93f238a494c
title: Data from numerical simulations of topological structure and dynamics of three-dimensional active nematics

description: The data in this dataset are the result of numerical simulations aimed at understanding the topology and dynamics of active nematics. In the manuscript a comparison between numerical and experimental results is also presented.
DOI: 10.4121/uuid:91a72f0a-d94b-416e-a22b-485b9b1b4277
title: Data accompanying the research on CGL Scheduling Problem

description: These instances are the real cost matrices of a continuous galvanizing line of a Spanish steel company. The element (i,j) of the matrix represent the cost of producing coil i right before coil j. If a value (i,j) is equal to -1, it means that the transition from coil i to coil j is forbidden. The problem consists in finding the minimun cost hamiltonian path (i.e. a minimun cost feasible sequence)
DOI: 10.4121/uuid:edfc5304-39ed-4556-a95a-f8b3313f7cfc
title: Data accompanying the manuscript "Premature mortality related to United States cross-state air pollution"

description: This dataset includes results and supplementary data of the publication titled “Premature mortality related to United States cross-state air pollution”, which presents the exchange of air pollution attributable early death impacts between the contiguous US states for 7 emissions sectors and 3 years (2005, 2011, and 2018). State-level source-receptor matrices are included for all years and species/sector combinations, in addition to the source-level definitions of each emission sector used
DOI: 10.4121/uuid:fadedd88-9331-4da2-9f59-725a339b0a29
title: Focus Group Interviews "Luck in Science"

description: The data consists of transcriptions of four focus group interviews that were undertaken at Dutch universities from April to October 2019. The focus groups were moderated by Karin Jongsma and co-moderated by Martin Sand.
DOI: 10.4121/uuid:13dc3b62-20e8-42f0-a071-4a11a3d998a2
title: Supporting raw data files as presented in the paper: Exploring the Size Limitations of Wurtzite III−V Film Growth

description: Exploring the size limitations of Wurtzite III-V film growth
DOI: 10.4121/uuid:5b5e8ea4-75e3-4628-ad81-da7b547397e5
title: Dataset used to correct for topographic and BRDF effects over rugged planetary terrain by coupling modified Sandmeier model with Hapke model

description: The purpose of this research paper is to develop a physical model-based approach to correcting for both BRDF and topographic effects over a rugged planetary surface (submitted to JGR planets). This data set contains all the data used in figure 4 to figure 15, including 12 folders in total. The parameter files from figure 4 to figure 15 are stored in the folders named as figure4 to figure15, respectively, which is convenient for readers to read and use the data
DOI: 10.4121/uuid:9a65f2cb-ed0a-4944-9811-4d47297bc0a2
title: Data accompanying the research on Effect of resveratrol on intestinal tight junction proteins and the gut microbiome in high-fat diet-fed insulin resistant mice

description: High-fat diet (HFD)-feeding induces changes in the microbiome and increases intestinal permeability by impairing tight junction (TJ) protein function, which may explain the insulin resistance (IR) and associated pathologies. We aimed to determine the effects of resveratrol (RES) on the gut microbiome and intestinal TJ proteins. Results showed that RES administration improved the lipid profile, and ameliorated the endotoxemia, inflammation, intestinal barrier defect and glucose intolerance in the HFD-fed mice. Furthermore, it modified the gut microbial composition, reducing the proportion of Firmicutes and the Firmicutes-to-Bacteroidetes ratio. Moreover, Verrucomicrobia and Akkermansia were much more abundant in the HFD+RES group. RES also significantly reduced the abundance of Bilophila and Ruminococcus. These findings suggest that RES may be useful for the treatment of IR and associated metabolic diseases.
DOI: 10.4121/uuid:a3901927-c3e6-47cf-9baa-b16033a09ff5
title: Replication Data for: Effect of non-migrating bars on dune dynamics in a lowland river

description: As dunes and larger scale bed forms such as bars coexist in rivers, the question arises whether dune dynamics are influenced by interaction with the underlying bed topography. The present study aims to establish the degree in which dune characteristics in two and three dimensions are influenced by an underlying topography dominated by non-migrating bars. As a case study, a 20 km stretch in the Waal River in the Netherlands is selected, which represents a sand-bed lowland river. At this location, longitudinal training dams (LTDs) have recently been constructed to ensure sufficient navigation depth during periods with low water levels, and to reduce flood risk. By using data covering two-year-long periods before and after LTD construction, the robustness of the results is investigated. Before LTD construction, dune characteristics show large variability both spatially and temporally, with dunes being longer, lower, less steep and having a lower lee side angle when they are located on bar tops. The correlation between dune characteristics and the underlying bed topography is disrupted by unsteady conditions for which the dunes are in a state of transition. The bar pattern causes tilting of dune crest lines, which may result from a transverse gradient in bed load sediment transport. As a result of LTD construction, the hydraulic and morphological conditions have changed significantly. Despite this, the main conclusions still hold, which strengthens the validity of the results.
DOI: 10.4121/uuid:ba8eb9bb-ed0b-475b-a681-960ef77e93db
title: Data underlying the research of Geochemical multisurface modeling of reactive zinc speciation in compost as influenced by extraction conditions

description: This dataset includes the data and calculations underlying the modeling work carried out for the scientific manuscript "Geochemical multi-surface modeling of reactive zinc speciation in compost as influenced by extraction conditions".
DOI: 10.4121/uuid:f41957e5-8532-40ee-9ddd-24186118813f
title: Simulated thoughts in virtual reality for negotiation training enhance self-efficacy and knowledge

description: This dataset is the result of a study on the effects of providing simulated thoughts in virtual reality for negotiation training, conducted in Interactive Intelligence Group, Department of Intelligent Systems, Faculty of Electrical Engineering, Mathematics and Computer Science, TU Delft. It included four types of files: the data collected in this study, the R scripts file of data analysis, the output of the analysis, and a readme file.
DOI: 10.4121/uuid:46879b06-bbf5-49ed-9c83-5d286c3371df
title: Data to the work "Pressure fluctuations from large-scale PIV over a serrated trailing edge"

description: Data from the figures of the work entitled "Pressure fluctuations from large-scale PIV over a serrated trailing edge" by L.T. Lima Pereira, D. Ragni, F. Avallone, F. Scarano
DOI: 10.4121/uuid:92f9e9c9-1041-4ca7-9f58-0d463aead08e
title: Questionnaire responses to model complexity in geosciences

description: This dataset contains: - the questions and answer options of a questionnaire on model complexity (‘Questionnaire.pdf’) - the answers to a questionnaire on the topic of model complexity (‘Questionnaire_responses.xls’) This questionnaire was sent out in mid-October 2018 and closed on 12 November 2018. The objective of the study was to investigate the geoscientific community’s views on complexity in models. No specific grant was used for this research. The results are published in a special-issue paper in Catena on women in geosciences as: Baartman JEM, Melsen LA, Moore D, Van der Ploeg, MJ, 2020. On the complexity of model complexity: viewpoints across the geosciences. Catena 186: 104261. https://doi.org/10.1016/j.catena.2019.104261
DOI: 10.4121/uuid:b88d84e1-7408-40d9-a8fc-d734f852dd7a
title: Protein function prediction using pre-trained ELMO embeddings

description: This dataset includes the data for training the protein function prediction models at github.com/stamakro/GCN-for-Structure-and-Function. For each protein, a pickle file is provided, containing its sequence, ELMo embedding and labels. It also includes the weights of the trained models that can be applied directly. README file at github.com/stamakro/GCN-for-Structure-and-Function
DOI: 10.4121/uuid:7a2b5118-9dda-4b82-8b9e-ddb6e750b08c
title: Supplementary material of the article "Trends in the Seaward Extent of Saltmarshes across Europe from Long-Term Satellite Data"

description: The datasets are the supplementary of the article "Trends in the Seaward Extent of Saltmarshes across Europe from Long-Term Satellite Data" published in Remote Sensing (year: 2019, volume: 11, issue: 14, page:1653) as part of the Special Issue Satellite-Based Wetland Observation. The authors of the this article are Marieke Liesa Laengner, Koen Siteur, and Daphne van der Wal