cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19524403.v1
title: Supplementary Material for: Severity assessment in rats undergoing subarachnoid hemorrhage induction by endovascular perforation or corresponding sham surgery

description: Introduction: Animal models for preclinical research of subarachnoid hemorrhage (SAH) are widely used as much of the pathophysiology remains unknown. However, the burden of these models inflicted on the animals is not well characterized. The European directive requires severity assessment-based allocation to categories. Up to now the classification into predefined categories is rather subjective and often without underlying scientific knowledge. We therefore aimed at assessing the burden of rats after SAH or the corresponding sham surgery to provide a scientific assessment. Methods: We performed a multimodal approach, using different behavior tests, clinical and neurological scoring, and biochemical markers using the common model for SAH of intracranial endovascular filament perforation in male Wistar rats. Up to seven days after surgery, animals with SAH were compared to sham surgery and to a group receiving only anesthesia and analgesia. Results: Sham surgery (n = 15) and SAH (n = 16) animals showed an increase in the clinical score the first days after surgery, indicating clinical deterioration, while animals receiving only anesthesia without surgery (n = 5) remained unaffected. Body weight loss occurred in all groups but was more pronounced and statistically significant only after surgery. The analysis of burrowing, open field (total distance, erections), balance beam and neuroscore showed primarily an effect of the surgery itself in sham surgery and SAH animals. Only concerning balance beam and neuroscore a difference was visible between sham surgery and SAH. Outcome of the analysis of systemic and local inflammatory parameters and of corticosterone in blood and its metabolites in feces was only robust in animals suffering from larger bleedings. Application of principal component analysis (PCA) resulted in a clear separation of sham surgery and SAH animals from their respective baseline as well as from the anesthesia only group at day 1 and 3, with the difference between sham surgery and SAH being not significant. Discussion/ Conclusion: To our knowledge we are the first to publish detailed clinical score sheet data combined with advanced behavioral assessment in the endovascular perforation model for SAH in rats. The tests chosen here clearly depict an impairment of the animals within the first days after surgery and are consequently well suited for assessment of the animals’ suffering in the model. A definitive classification into one of the severity categories named by the EU directive is yet pending and has to be performed in the future by including the assessment data from different neurological and non-neurological disease models.
DOI: 10.6084/m9.figshare.21922539.v1
title: Dataset

description: Synthetic PTB-XL dataset
DOI: 10.6084/m9.figshare.27886344.v1
title: Paper data

description: Data for the paper
DOI: 10.6084/m9.figshare.2324416.v1
title: Emails to authors and responses (data set 1)

description: Emails to authors and responses from Data set 1. Risk of bias assessed and assigned in data set 1.
DOI: 10.6084/m9.figshare.3560004.v1
title: Appendix G. Supplementary information on testing for any effects of partially overlapping landscapes.

description: Supplementary information on testing for any effects of partially overlapping landscapes.
DOI: 10.6084/m9.figshare.27759747.v1
title: <b>A class IIa HDACs inhibitor TMP269 restricts Peste des petits ruminants virus replication and reduces inflammation induced by virus infection</b>

description: Peste des petits ruminants (PPR) is an acute and fatal contagious disease, caused by the PPR virus (PPRV), and is one of the most damaging animal diseases. The replication of many viruses is closely related to the regulation of histone deacetylases (HDACs). TMP269, a selective class IIa HDAC inhibitor, plays an important role in cancer therapy and can modulate viral replication. However, the regulatory effects of TMP269 on PPRV replication remain poorly understood. Here, we found that TMP269 exerted a strong inhibitory effect on PPRV replication. RNA sequencing (RNA-seq) analysis showed that the upregulated expression of genes associated with inflammatory responses upon PPRV infection was significantly downregulated by TMP269 treatment. Further Quantitative Real-time PCR (qRT-PCR) analysis and ELISA experiments demonstrated that TMP269 decreased the expression of the pro-inflammatory chemokines CCL2, CCL5, CCL7, CXCL8, and cytokine IL-6 during infection, suggesting the vital role of TMP269 in anti-inflammatory processes. Collectively, our findings suggest that the HDAC inhibitor TMP269 is a promising antiviral agent for PPRV and provide novel insights into the antiviral and anti-inflammatory abilities of TMP269.
DOI: 10.6084/m9.figshare.28863005.v1
title: HPL-APMS-pHLA-zip

description: This dataset and model collection supports the publication "Hierarchical Progressive Learning for Zero-Shot Peptide-HLA Binding Prediction and Automated Antigenic Peptide Design".<code>data.zip</code> includes all curated training and evaluation datasets used in the study. For detailed descriptions of datasets and preprocessing steps, please refer to the <code>README.md</code> file available in the https://github.com/Jiadong001/HPL-APMS-pHLA.<code>model.zip</code> contains the trained model checkpoints from our proposed HPL framework.---------------------------------------------------------------------------------------------------------------------md5sum:data.zip - f3d94f7f657707f7054e1ef3ec00b5e2model.zip - 2731004fd6d2466eb88da02480689e43---------------------------------------------------------------------------------------------------------------------Released on: April 25, 2025.
DOI: 10.6084/m9.figshare.5349232.v3
title: Duck sample106 SNP variants

description: The supplementary datasets of paper <strong>"</strong>Genomics analyses of wild × domestic segregation population to reveal selected genes associated with body size and plumage color of ducks<strong>".</strong>
DOI: 10.6084/m9.figshare.20098136.v3
title: Human development and Tourism: Evidence from Ten Countries (Table 1 Countries Investigated)

description: Data presents ten countries selected from twenty-eight case studies covered in a literature review, as subjects in analysing the impact of tourism to human development using panel estimation approach. It shows the government structure/system, as referenced from CIA World Factbook (2021) and World Bank (2021) and travel and tourism's total contribution to GDP in 2019, as referenced from World Travel and Tourism Council (2021).
DOI: 10.6084/m9.figshare.14110415.v1
title: Data from Teixido et al. 2021. Biotropica. Fragmentation on herpetofauna in Brazil.xlsx

description: Dataset including papers, biomes, species, metrics, biological responses and effects of fragmentation on amphibians and reptiles in Brazil
DOI: 10.6084/m9.figshare.21311748.v1
title: Black Phosphorous-based Human-Machine Communication Interface

description: Dataset related to Figures 3, 4, and Supplementary Figures 3, 5, and 6.
DOI: 10.17608/k6.auckland.3470627.v2
title: Appendices for Sam McArthur Masters Thesis

description: The above documents contain a collection of the 60 cross-sections of Happy Valley Stream, Kaikoura, New Zealand. The cross-sections depict 2, 50 and 100 year Annual return interval flood modelling within an alpine stream. <br>Cross-sections have been extracted from DEMs of &lt;0.055m resolution, obtained by way of Structure-from-Motion photogrammetry. The 58 cross-sections span two 600m reaches of Happy Valley Stream, an alpine stream that sits high in the Seaward Kaikoura ranges. The cross-sections depict high resolution surface topography and channel morphology that have been used for assessing channel stability by way of stream power modelling. <br> Location: 42° 19’ 17’’ S, 172° 71’ 37” E
DOI: 10.6084/m9.figshare.25521331.v2
title: Effects of forest disturbances and an introduced ungulate on carbon storage in boreal forests

description: Datasets and code for Moran et al., [in revision]. Effects of forest disturbances and an introduced ungulate on carbon storage in boreal forests.
DOI: 10.6084/m9.figshare.27620511.v2
title: Ratio Figure Dataset

description: This is the dataset used to create Figure 14 in "Potential Ice Sheet Modulation of Volcanism in West Antarctica: Constraints on the cadence and magnitude of melt delivery into the crust"
DOI: 10.6084/m9.figshare.20132138.v1
title: Supplementary Material for: Application of the Milan System for Reporting Salivary Gland Cytopathology: A Single Institutional Experience of 354 Cases with Cytologic-Histologic Correlation

description: <b><i>Background:</i></b> Evaluation of salivary gland lesions is routinely done preoperatively by fine-needle aspiration cytology (FNAC). The Milan System for Reporting Salivary Gland Cytopathology (MSRSGC), with diagnostic categories I–VI, has been recommended to standardize the reporting of salivary gland lesions by FNAC. We aimed to reclassify archival salivary gland FNAC samples using MSRSGC, correlate the samples with surgical resections, and calculate the risk of malignancy (ROM) for each category. <b><i>Methods:</i></b> A total of 354 salivary gland FNAC samples (2013–2018) were reviewed. All FNAC results were retrospectively classified according to the MSRSGC. All cases had surgical follow-up. Histology was used to calculate the ROM, sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV), and diagnostic accuracy. <b><i>Results:</i></b> The 354 aspirates were classified as: nondiagnostic (ND) 17.0% (60), non-neoplastic (NN) 1.4% (5), atypia of undetermined significance (AUS) 11.0% (39), benign neoplasm (BN) 49.4% (175), salivary gland neoplasms of unknown malignant potential (SUMP) 10.7% (38), suspicious for malignancy (SM) 3.4% (12), and malignant (M) 7.1% (25). The ROM was as follows: ND 22%, NN 20%, AUS 15%, BN 2%, SUMP 53%, SM 75%, and M 96%. The diagnostic accuracy for separating benign versus malignant neoplasms was 96%. Cytologic-histologic correlation yielded a false-negative rate of 2.7%, false-positive rate of 10.5%, PPV of 89%, NPV of 97%, sensitivity of 87%, and specificity of 98%. <b><i>Conclusion:</i></b> MSRSGC helps standardize cytology reports, provides useful information for appropriate clinical management, and ensures the best care of patients with salivary gland lesions.
DOI: 10.6084/m9.figshare.6603155.v1
title: Database_Skiers_snowboarders.sav

description: All patients with Alpine sports-related injuries reported to a leading medical assistance organization in the Netherlands in the period of 2013-2016 were contacted. Medical data were collected from the patient files. Injuries were classified according to the Abbreviated Injury Scale (AIS) and Injury Severity Scale (ISS). Data on the accident conditions, i.e. risk factors, were collected using retrospective patient-reported questionnaires. Risk factors for serious injury (ISS≥9) were analysed by multivariate modelling.
DOI: 10.25402/pme.19062035.v1
title: Supplementary Materials – Genetic and genomic learning needs of oncologists and oncology nurses in the era of precision medicine: a scoping review

description: Table 1 - Medline search terms and search strategy Table 2 - PRISMA-ScR Checklist
DOI: 10.6084/m9.figshare.3513974.v1
title: Appendix D. Akaike Information Criterion values and structure of candidate models describing mercury concentration in Clear Lake fishes.

description: Akaike Information Criterion values and structure of candidate models describing mercury concentration in Clear Lake fishes.
DOI: 10.6084/m9.figshare.25033721.v2
title: Annotation files for bins of Ca. Grellia alia genomes obtained in the study.

description: Files in .gbk (Genbank) format containing annotations (generated by prokka tool) for draft genomes of Ca. Grellia alia, obtained from sequencing single host cells (SC1-3) or bulk host culture.
DOI: 10.6084/m9.figshare.7914194.v1
title: gVCF_HG03679

description: 1000 Genomes gVCF mapped to hs37d5 for HG03679. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.11583/dtu.22740191.v1
title: Collaboration of Ph.D. fellows in data-intensive research networks: The case of wind energy

description: This metadata record consists of 23 interview transcripts with Ph.D. fellows, who are members of the following four data-intensive wind-energy Innovative Training Networks (ITNs): FLOating Wind Energy NetwoRk (FLOAWER) Lidar Knowledge Europe (LIKE) Novel deSign, producTion and opEration aPproaches for floating WIND turbine farms (STEP4WIND) TRAINing school analysing enTRAINment in offshore WIND farms (Train2Wind) The qualitative interviews are about scientific collaboration within these networks. The Interviewees were assured that the interview transcripts would not be shared in publications. The related journal manuscript has not been submitted yet.
DOI: 10.15468/dl.cv258e
title: Occurrence Download

description: A dataset containing 608 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Acrobasis repandana Fabricius, 1798"
 ]
}

 The dataset includes 608 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009497-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.21758060.v1
title: Supplementary Material for: Female Risk factors for post-Infarction Depression and Anxiety (FRIDA): Trial Design

description: Introduction Female patients are at elevated risk for adverse mental health outcomes following hospital admission for ischemic heart disease. These psychosocial characteristics are correlated with unacceptably higher rates of cardiovascular (CV) morbidity and mortality. Guidelines to address mental health following acute coronary syndrome (ACS) can only be developed with the aid of studies elucidating which subgroups of female patients are at highest risk. Methods/Design The Female Risk factors for post-Infarction Depression and Anxiety (FRIDA) Study is a prospective multi-center questionnaire-based study of female participants admitted to hospital with ACS. Data is collected within 72 hours of admission as well as at three and six months. At baseline, participants complete a sociodemographic questionnaire, social support survey, and Hospital Depression and Anxiety Scale (HADS). Follow-up will consist of a demographic questionnaire, HADS, changes to health status, and quality of life indicators. Statistical analysis will include descriptive and inferential methods to observe baseline distributions and significance between groups. Discussion/Conclusion Our primary outcome is to determine if specific CV and sociodemographic factors correlate with increased depression and anxiety scores (HADS-D &gt;7; HADS-A &gt;7) at baseline. Our secondary aim is to determine if increased HADS scores at baseline and follow-up correlate with three and six-month health and quality of life outcomes. A total of 2,000 patients will be enrolled across seven study sites. The aim of the FRIDA Study is to understand which groups of female patients have the highest rates of depression and anxiety following ACS to better inform care.
DOI: 10.6084/m9.figshare.21082235.v1
title: Crop Yield Prediction Using Bayesian Spatially Varying Coefficient Models with Functional Predictors

description: Reliable prediction for crop yield is crucial for economic planning, food security monitoring, and agricultural risk management. This study aims to develop a crop yield forecasting model at large spatial scales using meteorological variables closely related to crop growth. The influence of climate patterns on agricultural productivity can be spatially inhomogeneous due to local soil and environmental conditions. We propose a Bayesian spatially varying functional model (BSVFM) to predict county-level corn yield for five Midwestern states, based on annual precipitation and daily maximum and minimum temperature trajectories modeled as multivariate functional predictors. The proposed model accommodates spatial correlation and measurement errors of functional predictors, and respects the spatially heterogeneous relationship between the response and associated predictors by allowing the functional coefficients to vary over space. The model also incorporates a Bayesian variable selection device to further expand its capacity to accommodate spatial heterogeneity. The proposed method is demonstrated to outperform other highly competitive methods in corn yield prediction, owing to the flexibility of allowing spatial heterogeneity with spatially varying coefficients in our model. Our study provides further insights into understanding the impact of climate change on crop yield. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.27239529.v2
title: The data of supplementary information that support the study on clonal evolutionary characteristics of patients with primary aldosteronism

description: The data of supplementary information that support the study on clonal evolutionary characteristics of patients with primary aldosteronism.
DOI: 10.6084/m9.figshare.20161934.v2
title: ChAdOx1 NiV vaccination protects against lethal Nipah Bangladesh virus infection in African green monkeys

description: This dataset contains all the raw data from the manuscript ' ChAdOx1 NiV vaccination protects against lethal Nipah Bangladesh virus infection in African green monkeys'.
DOI: 10.6084/m9.figshare.27188421.v1
title: Data for a working paper "Salmon futures as forecasts" by Daumantas Bloznelis as of 2024-10-08

description: The working paper "Salmon futures as forecasts" by Daumantas Bloznelis explores salmon futures prices viewed as point forecasts of future spot prices. The data consists of salmon futures prices, salmon spot prices and related time series.
DOI: 10.6084/m9.figshare.28262426.v3
title: Hydrangea

description: Hydrangea is a defect library for LLM-enabled software. Hydrangea has 4 main petals, each corresponding to one of the major components where defects often arise: LLM agent, vector database, software component, and system.This repository is made available under the Public Domain Dedication and License v1.0 whose full text can be found at: http://opendatacommons.org/licenses/pddl/1.0/ - see the LICENSE file for details.What is LLM-enabled software?It is software that integrates LLMs (large language models) with RAG (retrieval-augmented generation ) support to realize intelligence features.It contains four components:<b>LLM agent</b> that manages LLM interfaces, constructs prompts, and invokes the LLM<b>Vector database</b> that supports RAG algorithm and enhances the LLM agent<b>Software component</b> that interacts with the first two components to perform certain tasks<b>System</b> that manages resources and privileges to carry out the executionWhat's inside the artifact:For enhanced availability and reusability, we offer an organized defect library utilized in our manual studies.Below are details of what is included in each part:Application benchmarkA suite of 100 non-trivial projects which tightly integrates LLMs and vector databases in their workflow.We have uploaded application.csv, it contains:software project nameGitHub link and commit IDclassificationused LLM and vector databaseHydrangea Defect LibraryThe result of TABLE Ⅱ in our paper can be reproduced by this organized defect library.In the uploaded defect.csv, we have documented different cases for the same defect type, as defects can manifest in various ways. For each distinct case of the same defect, we have separated them with a blank line and labeled them as case 1, case 2, and so on, according to the specific circumstances.It contains:A collection of defects in these projects (involves 100 projects),containingthe defect type and its detailed explanationthe exact file and source-code line location of the defectthe consequences of defectthe defect-triggering testsThe meaning of different columns in defect.csv:<b>APP</b>: the applications from GitHub.<b>commit url</b>: the relevant version of the application on GitHub.<b>types</b>: different defect types.<b>cases</b>: different examples for each defect type. Cells containing a "/" indicate that there is only one case for that defect type.<b>explanation</b>: details of the defect.<b>consequences</b>: the impacts of the defect. Here we use the abbreviations: ST refer to fail-stops, IC refer to incorrectness, SL refer to slower execution, UI refer to unfriendly user interface, TK refer to more tokens, and IS refer to insecure.<b>source-code locations</b>: The location of the code file where the defect occurs.<b>defect-triggering tests</b>: The software input that triggers the defect.<br>
DOI: 10.6084/m9.figshare.19499204.v1
title: patches and local annotations, slide 092, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.7932119.v1
title: gVCF_HG04195

description: 1000 Genomes gVCF mapped to hs37d5 for HG04195. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.845676.v1
title: New Hampshire stumpage price medians XL spreadsheet

description: New Hampshire timber stumpage prices, statewide median prices.
DOI: 10.6084/m9.figshare.25139510.v1
title: <b>Paleocene</b><b> opening of </b><b>Drake </b><b>Passage</b>

description: <b>The South Shetland Islands paleomagnetic data used in the paper "</b><b>Paleocene</b><b> opening of </b><b>Drake </b><b>Passage</b><b>"</b>
DOI: 10.25442/hku.16900542.v1
title: Supporting Data for "Construct Structured Illumination with Optical Fibres for Microscopic Imaging"

description: This dataset contains raw experimental data in thesis "Construct Structured Illumination with Optical Fibres for Microscopic Imaging".
DOI: 10.26180/5bdaa3e96952f
title: p2 day 1 non attend EEG data

description: participant 2 day 1 non-attend EEG data
DOI: 10.6084/m9.figshare.26011705.v1
title: 的数据和代码适宜环境中与生物营养病原体感染相关的较高叶片位置”

description: 了解真菌病原体之间病害位置（即受感染叶子的平均高度）的差异对于预测和管理植物病害至关重要。然而，我们对不同疾病和寄主植物类型的病害位置如何变化，以及当地气候（即温度和降水）是否影响病害位置知之甚少。本文研究了青藏高原、内蒙古高原和华北平原等中国主要生态系统中草本植物的病害分布。我们测试了真菌病原体特征（例如，疾病类型和生活史）、寄主植物特征（例如，生物量、自然高度和植物生长类型）和气候条件（例如，年平均温度和降水量）如何影响疾病位置。与坏死性病原体相比，生物营养病原体的病害位置往往更高，这种模式在杂草和豆科植物中最为明显。疾病位置也与环境有关;较高的温度和降水显著增加了疾病的位置，但这些影响因疾病类型而异。对于生物营养和坏死营养病原体，较大和较高的寄主植物的平均病害位置较低。 在这项研究中，我们提供了疾病类型和气候条件如何影响疾病位置的证据;我们的研究结果强调了疾病位置对于了解感染模式和管理疾病爆发的重要性。