cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/mp3-r05-03r
title: Microthelphusa wymani (Rathbun, 1905)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.jydrfm
title: Occurrence Download

description: A dataset containing 8872 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Picnomon acarna (L.) Cass."
 ]
}

 The dataset includes 8872 records from 225 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102785-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/9m8-6c9-426
title: Inachus dorsettensis (Pennant, 1777)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/esz-xbq-1jg
title: Euraphia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.4121/47b3f733-0072-4a3e-b475-93bf3399e5ec
title: Database underlying the publication: Regional differentials in infant mortality in the Netherlands in the late 19th and early 20th century: Cross-sectional spatial analyses at the municipal level

description: This database contains cross-sectional data for all municipalities in the Netherlands during two distinct periods: 1877–1879 and 1908–1910. For each municipality, a wide range of information is provided for these two short time frames. The data includes: (1) Demographic indicators, such as mid-year and end-of-year population size (sometimes disaggregated by sex), infant mortality, stillbirths, births (total and male), illegitimate births, and male/female in- and out-migration figures. (2) Religious composition, reporting absolute numbers of adherents per religion, including Orthodox Protestants, Dutch Reformed, Roman Catholics, and Jewish populations. (3) Medical data, including the number of medical professionals (e.g., doctors, midwives, nurses) and detailed cowpox vaccination figures, including infant vaccinations and averages over multiple years. Toddler vaccination data is also included for the earlier period. (4) Socioeconomic participation indicators, including the unemployment rate (for 1909), percentage employed in agriculture, female labor participation, and the number of eligible voters in municipal elections. (5) Additional variables include the presence and duration of water pipe supply, economic region (CBS 1920–1930s), soil type, and municipal area size.<br> This dataset forms the empirical foundation for the historical-demographic research article "Regional differentials in infant mortality in the Netherlands in the late 19th and early 20th century: Cross-sectional spatial analyses at the municipal level." Included with the database are: (1) The original Excel database containing all relevant data. (2) An accompanying R Project file for data processing and analysis. (3) Adjusted shapefiles in GeoJSON format, derived from the NLGis shapefiles by Boonstra (2007). (4) Additional files, including R-script, regression tables and more.<br> When using this database, please cite the following sources: (1) Mourits, Rick J.; Boonstra, Onno; Knippenberg, Hans; Hofstee, Evert W.; Zijdeman, Richard L. (2016). Historische Database Nederlandse Gemeenten. IISH Data Collection, V5. https://hdl.handle.net/10622/RPBVK4 (2) Boonstra, O.W.A. (2007). NLGis shapefiles. DANS. https://doi.org/10.17026/dans-xb9-t677 (3) Rutten, W. (1997). De vreselijkste aller harpijen: Pokkenepidemieën en pokkenbestrijding in Nederland in de achttiende en negentiende eeuw: Een sociaal-historische en historisch-demografische studie. Landbouwuniversiteit Wageningen. https://doi.org/10.18174/138379<br><br>
DOI: 10.3535/01g-49j-ny5
title: Dardanus calidus (Risso, 1827)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j22-q1v-pl1
title: Microthelphusa wymani (Rathbun, 1905)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.4121/47b3f733-0072-4a3e-b475-93bf3399e5ec.v2
title: Database underlying the publication: Regional differentials in infant mortality in the Netherlands in the late 19th and early 20th century: Cross-sectional spatial analyses at the municipal level

description: This database contains cross-sectional data for all municipalities in the Netherlands during two distinct periods: 1877–1879 and 1908–1910. For each municipality, a wide range of information is provided for these two short time frames. The data includes: (1) Demographic indicators, such as mid-year and end-of-year population size (sometimes disaggregated by sex), infant mortality, stillbirths, births (total and male), illegitimate births, and male/female in- and out-migration figures. (2) Religious composition, reporting absolute numbers of adherents per religion, including Orthodox Protestants, Dutch Reformed, Roman Catholics, and Jewish populations. (3) Medical data, including the number of medical professionals (e.g., doctors, midwives, nurses) and detailed cowpox vaccination figures, including infant vaccinations and averages over multiple years. Toddler vaccination data is also included for the earlier period. (4) Socioeconomic participation indicators, including the unemployment rate (for 1909), percentage employed in agriculture, female labor participation, and the number of eligible voters in municipal elections. (5) Additional variables include the presence and duration of water pipe supply, economic region (CBS 1920–1930s), soil type, and municipal area size.<br> This dataset forms the empirical foundation for the historical-demographic research article "Regional differentials in infant mortality in the Netherlands in the late 19th and early 20th century: Cross-sectional spatial analyses at the municipal level." Included with the database are: (1) The original Excel database containing all relevant data. (2) An accompanying R Project file for data processing and analysis. (3) Adjusted shapefiles in GeoJSON format, derived from the NLGis shapefiles by Boonstra (2007). (4) Additional files, including R-script, regression tables and more.<br> When using this database, please cite the following sources: (1) Mourits, Rick J.; Boonstra, Onno; Knippenberg, Hans; Hofstee, Evert W.; Zijdeman, Richard L. (2016). Historische Database Nederlandse Gemeenten. IISH Data Collection, V5. https://hdl.handle.net/10622/RPBVK4 (2) Boonstra, O.W.A. (2007). NLGis shapefiles. DANS. https://doi.org/10.17026/dans-xb9-t677 (3) Rutten, W. (1997). De vreselijkste aller harpijen: Pokkenepidemieën en pokkenbestrijding in Nederland in de achttiende en negentiende eeuw: Een sociaal-historische en historisch-demografische studie. Landbouwuniversiteit Wageningen. https://doi.org/10.18174/138379<br><br>
DOI: 10.3535/gmh-ww4-v0b
title: Pachygrapsus maurus (Lucas, 1846)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wsl-v9b-enk
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g77-80k-f1p
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/04t-182-c74
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rgk-ymk-asv
title: Anapagurus chiroacanthus (Lilljeborg, 1856)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/bd095jt2882
title: Data Appendices for _Close Reading with Computers_, published by Stanford University Press

description: Supplementary data files for the book by Martin Paul Eve, _Close Reading With Computers: Textual Scholarship, Computational Formalism, and David Mitchell’s Cloud Atlas_ (Stanford, CA: Stanford University Press, 2019).Digital Appendix 1: Data for Chapter Two.This appendix is a JavaScript Object Notation (JSON) file that is used to generate Figure 2 using the SankeyTextualVariant software.Digital Appendix 2: Data for Chapter Three.* The data used to generate figures 5 through 13.* The data used to make the claims about Melville’s texts.* The part-of-speech tagging outputs of Cloud Atlas E.Digital Appendix 3: Data for Chapter Four.This appendix contains the data used to generate figures 14 through 16.
DOI: 10.3535/dek-23s-mhd
title: Lepas

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/txp-arm-sqp
title: Chthamalus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/dz692fn7184
title: Spacecraft Pose Estimation Dataset (SPEED)

description: This repository contains Spacecraft PosE Estimation Dataset (SPEED), which is used to train and evaluate the performance of deep learning models for pose estimation of noncooperative spacecraft. SPEED consists of synthetic as well as actual camera images of a mock-up of the Tango spacecraft from the PRISMA mission. The synthetic images are created by fusing OpenGL-based renderings of the spacecraft’s 3D model with actual images of the Earth captured by the Himawari-8 meteorological satellite. The actual camera images are created using a 7 degrees-of-freedom robotic arm, which positions and orients a vision-based sensor with respect to a full-scale mock-up of the Tango spacecraft. Custom illumination devices simulate the Earth albedo and Sun light with high fidelity to emulate the illumination conditions present in space. SPEED was used in the international competition for spacecraft pose estimation co-hosted by the Advanced Concepts Team of the European Space Agency and the Space Rendezvous Laboratory of Stanford University.
DOI: 10.3535/9cv-sr2-z0l
title: Lepas

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/bg095cp1548
title: Data for: Emergent ferromagnetism near three-quarters filling in twisted bilayer graphene

description: This archive contains the data and Python code generating figures for the article "Emergent ferromagnetism near three-quarters filling in twisted bilayer graphene" by Aaron L. Sharpe, Eli J. Fox, Arthur W. Barnard, Joe Finney, Kenji Watanabe, Takashi Taniguchi, M. A. Kastner, and David Goldhaber-Gordon and available at https://arxiv.org/abs/1901.03520. This archive contains the following: 1) TBG_ferromagnetism_figures.ipynb, a Jupyter notebook loading data and generating figures. The notebook has been tested with Python version 3.6.7 and Jupyter notebook server version 5.5.0. 2) HTML_notebook directory that contains 'TBG_ferromagnetism_figures.html' an HTML file generated from the Jupyter notebook, and PNG files loaded by the HTML file, 3) scripts directory that contains additional files used by the Jupyter notebook, and 4) data directory, containing all data used to generate figures for the manuscript, stored as JSON objects. Refer to the notebook for figure captions describing the data.
DOI: 10.25740/ct379mv1537
title: SARS-CoV-2 RNA in settled solids from a large urban wastewater treatment plant

description: We analyzed a longitudinal time series of 89 settled solids samples from a wastewater treatment plant for SARS-CoV-2 RNA as well as coronavirus recovery (bovine coronavirus) and fecal strength (pepper mild mottle virus, PMMoV) controls.
DOI: 10.25740/sq987cc0358
title: Structural data used to test a new geometric deep learning RNA scoring function emulating fully de novo modeling conditions

description: This deposition contains two primary subdirectories, each compressed.
(Depositions in the Stanford Digital Repository must have nominally flat
directory structures, solved by tarballs.) The subdirectory
"nonnative_secstruct" corresponds to the originally published version of the
paper. The subdirectory "xtal_secstruct" corresponds to the corrected version of
the paper. 

For 11 of the 16 RNA molecules in this benchmark (benchmark 2 of the paper), all
of the candidate models in "nonnative_secstruct" were constructed using
incorrect Watson-Crick base pairing, in contrast to what would typically happen
in actual blind structure prediction (where modelers might try multiple
secondary structures and pick those that generate realistic 3D models). In
"xtal_sectruct", the candidate models were regenerated using correct
Watson-Crick base pairing. 

Each of these primary subdirectories contains 16 .tar.gz compressed directories,
each of which contains 5,000 structural models in PDB format of 16 distinct RNA
molecules. These models were used to benchmark a new scoring function for RNA
structure.

The first order of business in choosing the cases studied in this benchmark was
ensuring that they did not overlap with any RNA molecules studied previously in
the ARES project. Thus, this benchmark does not represent a perfectly
comprehensive account of RNA structure and was not meant to: it is just one of
several ways you could select a set of structures complementary to those studied
previously in the paper. It is *likely* that, therefore, these models will be of
archival value alone; alternatively, these models, or the modeling problems they
address, could make up part of a larger comprehensive benchmark.

To that end, in each primary subdirectory we have also included inputs.tar.gz,
which provides all the files necessary for rerunning these benchmark cases
yourself. Models were generated with FARFAR2, code for RNA fragment assembly
documented extensively at https://new.rosettacommons.org/docs/latest/FARFAR2.
That documentation should demystify the executable commands found in each
README_FARFAR file.

If you are already familiar with the Das lab's repository for RNA benchmarking,
you can use that system to set up replications of the xtal_secstruct simulations
at https://github.com/DasLab/rna_benchmark, using the benchmark definition file 
ares_benchmark2.txt. 

If you are interested in training a new RNA scoring function or sampling method,
consider the FARFAR2-Classics and FARFAR2-Puzzles benchmarks, available at 
https://purl.stanford.edu/wn364wz7925.
DOI: 10.3535/6cc-g0a-vsb
title: Crassicorophium bonellii (H. Milne Edwards, 1830)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/njy-44b-1ac
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4y8-yhj-0gb
title: Pachygrapsus marmoratus (Fabricius, 1787)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zq1-fhv-p9w
title: Palaemon elegans Rathke, 1837

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jgr-5pe-xcp
title: Dosima

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k0w-qbr-fmx
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fcw-vyt-5k5
title: Balanus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/jm289gm4861
title: Research Materials Supporting the Publication Entitled "Cerebrovascular Reactivity Measurements Using Simultaneous 15O-Water PET and ASL MRI: Impacts of Arterial Transit Time, Labeling Efficiency, and Hematocrit"

description: Cerebrovascular reactivity (CVR) reflects the capacity of the brain to meet changing physiological demands and can predict the risk of cerebrovascular diseases. CVR can be obtained by measuring the change in cerebral blood flow (CBF) during a brain stress test where CBF is altered by a vasodilator such as acetazolamide. Although the gold standard to quantify CBF is PET imaging, the procedure is invasive and inaccessible to most patients. Arterial spin labeling (ASL) is a non-invasive and quantitative MRI method to measure CBF, and a consensus guideline has been published for the clinical application of ASL. Despite single post labeling delay (PLD) pseudo-continuous ASL (PCASL) being the recommended ASL technique for CBF quantification, it is sensitive to variations to the arterial transit time (ATT) and labeling efficiency induced by the vasodilator in CVR studies. Multi-PLD ASL controls for the changes in ATT, and velocity selective ASL is in theory insensitive to both ATT and labeling efficiency. Here we investigate CVR using simultaneous 15O-water PET and ASL MRI data from 19 healthy subjects. CVR and CBF measured by the ASL techniques were compared using PET as the reference technique. The impacts of blood T1 and labeling efficiency on ASL were assessed using individual measurements of hematocrit and flow velocity data of the carotid and vertebral arteries measured using phase-contrast MRI. We found that multi-PLD PCASL is the ASL technique most consistent with PET for CVR quantification (group mean CVR of the whole brain = 42±19% and 40±18% respectively). Single-PLD ASL underestimated the CVR of the whole brain significantly by 15±10% compared with PET (p<0.01, paired t test). Changes in ATT pre- and post-acetazolamide was the principal factor affecting ASL-based CVR quantification. Variations in labeling efficiency and blood T1 had negligible effects.
DOI: 10.3535/jdg-dfw-qyl
title: Synalpheus tricuspidatus (Heller, 1861)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lk1-p11-fy1
title: Trachysalambria curvirostris (Stimpson, 1860)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bq9-be1-kw7
title: Tubuca paradussumieri (Bott, 1973)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vww-9k3-wpa
title: Plagusia immaculata Lamarck, 1818

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/08q-ca7-42q
title: Paradorippe granulata (De Haan, 1841)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bqf-sak-8az
title: Polybius henslowii Leach, 1820

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/qs993pr7111
title: Data collected during systematic review of biochar effectiveness at removing stormwater contaminants from stormwater

description: These data were compiled during a systematic review of the literature conducted in late 2018 by the authors. The data were used a peer-reviewed publication which should be referenced for more details on the data and analysis.
DOI: 10.3535/kk5-nh6-61r
title: Hepatus scaber Holthuis, 1959

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/yn042kx5009
title: Effect of storage on concentrations of SARS-CoV-2 RNA in settled solids of wastewater treatment plants

description: These data describe the concentrations of SARS-CoV-2 RNA in settled solids before after being subject to different storage conditions.
DOI: 10.3535/4q4-6qa-35q
title: Penaeus aztecus Ives, 1891

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8rk-mee-1np
title: Metapenaeus ensis (De Haan, 1844)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dt5-nvt-ybv
title: Crangon crangon (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/gz983hf3741
title: Monkeypox (MPXV) DNA concentrations in wastewater solids in nine California communities.

description: Monkeypox (MPXV) DNA concentrations in wastewater solids in nine California communities.
DOI: 10.25740/px092px3282
title: Data for "Quantum well states in fractured crystals of the heavy fermion material CeCoIn5"

description: This HDF5 file contains the data that supports the findings of "Quantum well states in fractured crystals of the heavy fermion material CeCoIn5" authored by N. Gauthier, J. A. Sobota, M. Hashimoto, H. Pfau, D.-H. Lu, E. D. Bauer, F. Ronning, P. S. Kirchmann, and Z.-X. Shen. Preprint available at https://arxiv.org/abs/2006.16301.
DOI: 10.25740/rq831rt1470
title: Data and code for Aalto et al. "Models with environmental drivers offer a plausible mechanism for the rapid spread of infectious disease outbreaks in marine organisms" published in Scientific Reports in 2020.

description: The first signs of sea star wasting disease (SSWD) epidemic occurred in just few months in 2013 along the entire North American Pacific coast. Disease dynamics did not manifest as the typical travelling wave of reaction-diffusion epidemiological model, suggesting that other environmental factors might have played some role. To help explore how external factors might trigger disease, we built a coupled oceanographic-epidemiological model and contrasted three hypotheses on the influence of temperature on disease transmission and pathogenicity. Models that linked mortality to sea surface temperature gave patterns more consistent with observed data on sea star wasting disease, which suggests that environmental stress could explain why some marine diseases seem to spread so fast and have region-wide impacts on host populations.
DOI: 10.3535/fyt-1q6-90e
title: Metapenaeopsis lamellata (De Haan, 1844)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/he6-d2c-bbg
title: Inachus phalangium (Fabricius, 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/sc417ft5944
title: Data for "Band structure of Bi surfaces formed on Bi2Se3 upon exposure to air"

description: This archive contains the data that supports the findings of "Band structure of Bi surfaces formed on Bi2Se3 upon exposure to air" authored by A. Gauthier, J. A. Sobota, N. Gauthier, C. R. Rotundu, Z.-X. Shen, and P. S. Kirchmann.
DOI: 10.3535/2yp-3hz-1n1
title: Pilumnus hirtellus (Linnaeus, 1761)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g8v-w8e-tcy
title: Penaeus aztecus Ives, 1891

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v07-xgq-l5d
title: Microthelphusa wymani (Rathbun, 1905)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/wg432jy0214
title: Data for "Nematic quantum criticality in an Fe-based superconductor revealed by strain-tuning"

description: Quantum criticality has been invoked as being essential to the understanding of a wide range of exotic electronic behavior, including heavy Fermion and unconventional superconductivity, but conclusive evidence of quantum critical fluc- tuations has been elusive in many materials of current interest. An expected characteristic fea- ture of quantum criticality is power law behavior of thermodynamic quantities as a function of a non-thermal tuning parameter close to the quan- tum critical point (QCP). In the present work, we observe power law behavior of the critical temperature of the coupled nematic/structural phase transition as a function of uniaxial stress in a representative family of Fe-based supercon- ductors. Our measurements provide direct evi- dence of quantum critical nematic fluctuations in this material. Furthermore, these quantum criti- cal fluctuations are not confined within a narrow regime around the QCP, but extend over a wide range of temperatures and tuning parameters.
DOI: 10.3535/5te-gpd-4ez
title: Chelura terebrans Philippi, 1839

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6gd-c47-pva
title: Cantellius

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.