cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/n6mmgpycgz
title: 2E-VRP-SCS  Data

description: Inspired by the lane-sharing phenomenon in the city logistics practices, a concept named the “sharing-lane crossdock satellite” (SCS) is introduced. We introduce the two-echelon vehicle routing problem with SCSs (2E-VRP-SCS). On the first echelon, 1st-echelon vehicles depart from the city distribution center (CDC) to serve SCSs. At authorized time windows, 1st-echelon vehicles can park at SCSs for cargo transshipment between vehicles. On the second echelon, 2nd-echelon vehicles receive cargoes to service customers. SCSs are used to perform the direct transshipment that is defined as moving cargoes directly from 1st-echelon vehicles to 2nd-echelon vehicles, with no storing. Each SCS has several time windows. 
The 2E-VRP-SCS network includes one CDC, a number of SCSs, a number of customers, and arcs. A homogeneous fleet of 1st-echelon vehicles is available at the CDC. Second-echelon vehicles departing from each SCS serve customers. At SCSs, there is a constant transshipment speed of cargoes being moved from 1st-echelon vehicles to 2nd-echelon vehicles, and the transshipment speed is determined by the cargo volume per hour. At a time window of one SCS, “the available transshipment capacity” = “the transshipment speed” × “the remaining time of the time window”. 
In a route, a vehicle can visit an SCS or one customer at most once, and constraints on route duration must be respected. At a time window of an SCS, there parks no more than one 1st-echelon vehicle. Direct transshipment is considered a one-to-one operation. The 2E-VRP-SCS objective is to minimize the vehicle working time.

We design 35 small-scale instances. The number (NumS) of included SCSs is 1, 2 or 3. The number (NumC) of customers is 5, 6, 8, 9 or 10. Each small-scale instance is named by S-NumS-NumC-No. (No. is 1, 2, 3, 4 or 5). The network is abstracted on a graph with a grid of 1 km. The CDC is located at the center node of the graph. Other nodes are randomly selected to act as SCS and customer locations. Customer demand is randomly estimated. The whole time window of SCS m is confirmed beforehand. 
Large-scale instances are designed by referring to practical data. We observe the situation of traffic flows on some roads on several working days. Several lane-spaces are empirically chosen to make up the SCS set. The included SCSs are randomly chosen from the SCS set. The distance between any two nodes on the first echelon is calculated through the latitudes and longitudes of nodes. We supplement some data by the method of generating small-scale instances. We design 42 large-scale instances that are denoted as L-NumS-NumC-No. (No. is 1, 2 or 3). Of the large-scale instances, NumS is 5, 10, 20 or 30. NumC is 50, 75, 100, 150, 200, 250, 300, 400, 500 or 600, which is chosen by referring to NumS.
DOI: 10.6084/m9.figshare.14852955.v4
title: Climate velocity and land-use instability 1971-2100

description: Datasets contains <br>(a) Raster layers of climate and land-use velocity during 1971-2000, 2021-2050, and 2071-2100. (see Asamoah <i>et al.</i> Climate and land use changes reduce the benefits of terrestrial protected areas for detailed methodology). Spatial resolution: 24 km in a Mollweide projection (ESRI: 54009).<br>(b) Microsoft excel spreadsheets and R codes for visualizing some of the plots in Asamoah <i>et al.</i>
DOI: 10.6084/m9.figshare.7993181.v1
title: Low-Cost Textile Myoelectric Control of KAFO

description: The use of surface electromyography (sEMG) for the detection of heel-strike and toe-off is investigated in order to control the knee joint of passive KAFOs. This has the potential to allow for the knee joint to bend during the swing and to lock during the stance of the supported leg. sEMG and motion capture experiments are run in India on three healthy participants were they are asked to perform a normal gait in a straight direction. These experiments are performed with embroidered electrodes which are a low-cost and reusable alternative to disposable gel electrodes. The event to predict are heel-strike and toe-off from the rest of the gait.
DOI: 10.17632/zrcd7627fc
title: Machine Learning Assisted Corrosion Behaviour Prediction of Dual-Engineered Ti6Al4V Alloy

description: Corrosion experiments were conducted on different surface treated samples of Ti6Al4V alloy and data collected for machine learning model building. The raw/processed data used for this research work and the source coding file are attached in this folder.
DOI: 10.6084/m9.figshare.1420536.v2
title: High resolution locomotor time series in Japanese quail in a home-cage environment over a 6.5 day period (# 11-group 2)

description: Each data point represents a 0.5s time interval (xi) in which the quail could either been ambulating (xi=1) or immobile (xi=0), over a 6.5 day period .The total number of data points is approximately 1.070.000. This time series has both a fractal pattern, as well as ultradian and circadian rhythms. <strong>This is the data from quail number 11, of the second experimental group.</strong> Note that in the total experiment the locomotor behavior of 24 quail was studied in two independent experimental groups. See details in project "Quail locomotor time series in a home-cage environment over a 6.5 day period sampled at 0.5s intervals."
DOI: 10.6084/m9.figshare.4805830.v1
title: Automated Fiber Quantification (AFQ) tract profiles for the 8 corpus callosum segments in girls and boys

description: <pre>Shown are the Automated Fiber Quantification (AFQ) tract profiles for the 8 corpus callosum segments in girls and boys. Plotted is FA (± SE) along the core of the fiber tract (y-axis) at 100 equidistant points (x-axis). The left hemisphere is on the left (location 0 - 49) and the right hemisphere is on the right (location 51 - 100) with midsagittal at location 50. Shaded regions represent locations in which p &lt; 0.05, FDR-corrected.</pre>
DOI: 10.17632/cwf3c4y7pw
title: Results of Quantagonia's Hybrid Solver and D-Wave's LeapBQMHybrid Solver on the QOPTLib Optimization Benchmark

description: This dataset contains the instances and results presented in the following paper:

Eneko Osaba, Esther Villar-Rodriguez, Aitor Gomez-Tejedor, and Izaskun Oregi. Hybrid Quantum Solvers in Production: how to succeed in the NISQ era? arXiv preprint arXiv:2401.10302 (2024).

Abstract: Hybrid quantum computing is considered the present and the future within the field of quantum computing. Far from being a passing fad, this trend cannot be considered just a stopgap to address the limitations of NISQ-era devices. The foundations linking both computing paradigms will remain robust over time. Despite buoyant research activity, the challenges in hybrid computing are still countless, ranging from the proper characterization of current solvers to the establishment of appropriate methodologies for the design and fair evaluation of hybrid algorithms. The contribution of this work is twofold: first, we describe and categorize some of the most frequently used hybrid solvers, resorting to two different taxonomies recently published in the literature. Secondly, we put a special focus on two solvers that are currently deployed in real production and that have demonstrated to be near the real industry. These solvers are the LeapHybridBQMSampler contained in D-Wave's Hybrid Solver Service and Quantagonia's Hybrid Solver. We analyze the performance of both hybrid methods using as benchmarks four well-known combinatorial optimization problems: the Traveling Salesman Problem, Vehicle Routing Problem, Bin Packing Problem, and Maximum Cut Problem. Thanks to the contributions presented in this paper, the reader gains insight into the performance of those hybridization strategies nowadays in production and close to the industrial markets.
DOI: 10.6084/m9.figshare.24867261.v1
title: Treating pain in sickle cell disease by means of focused ultrasound neuromodulation (EEG recordings)

description: We have demonstrated a novel transcranial focused ultrasound technology for pain treatment, that promises to provide non-pharmacologic chronic pain treatment for patients associated with underlying conditions such as cancer or sickle cell disease (SCD).The EEG measurements were conducted from 8 experimental in vivo mice. This work was supported in part by NIH EB029354, NS124564, and NS131069. Animal care and handling are according to the regulation of Institutional Animal Care and Use Committee of Carnegie Mellon University and Long Beach VA medical Centre and complied with National Institutes of Health guidelines. More information can be found in the corresponding manuscript:Kim MG*, Yu K*, Yeh C-Y, Fouda R, Argueta D, Kiven S, Ni Y, Niu X, Chen Q, Kim K, Gupta K, He B. Low-intensity transcranial focused ultrasound changes pain-associated behaviors by modulating pain processing brain circuits. bioRxiv: https://doi.org/10.1101/2022.12.07.519518 (*Equal contribution, first author)If anyone uses the whole or part of the dataset provided here, we kindly ask you to cite the above publication in any of your publications or presentations:Folders:EEG raw data are divided into three groups: Negative control group, tFUS with a PRF of 40 Hz, and tFUS with a PRF of 3 kHz where each data is labeled as negCtrl, tFUS40Hz, and tFUS3kHz, respectively. Data are saved in MATLAB workspace format. Each .mat file is named with [type of stimulation]_[animal number]. The 2-sec epochs are divided into four periods in the analysis described as:- Baseline epochs: 99 trials (#1-99 trial) x 2034 data points- tFUS stimulation or negative control epochs: 600 trials (#100-699 trial) x 2034 data points- Heat stimuli epochs: 40 trials (#701-740 trial) x 2034 data points- Post-treatment epochs: 459 trials (#741-1199 trial) x 2034 data points
DOI: 10.6084/m9.figshare.27075211.v1
title: Typhoon Haikui (2023)

description: All the observational data (including the data of rain gauges, disdrometers and polarimetric radar) in Wang et al. (2024) are publicly available in figshare repository.
DOI: 10.6084/m9.figshare.29109992.v1
title: ERbeta KO mouse prostate RNA-Seq.xlsx

description: The RNA-Seq data for 12-mo-old ERβ<sup>crispr-/-</sup> (an ERβ knockout mouse by using CRISPR/Cas9 technology) and wild type (WT) mouse ventral prostates.
DOI: 10.17632/752nd4w7pd
title: Differential Gene Expression Data from the Human Central Nervous System across Alzheimer’s Disease, Lewy Body Diseases, and the Amyotrophic Lateral Sclerosis and Frontotemporal Dementia Spectrum

description: In Noori et al. (2020), we hypothesized that there is a shared gene expression signature underlying neurodegenerative proteinopathies including Alzheimer’s disease (AD), Lewy body diseases (LBD), and the amyotrophic lateral sclerosis and frontotemporal dementia (ALS-FTD) spectrum. To test this hypothesis, we performed a systematic review and meta-analysis of 60 human central nervous system transcriptomic datasets in the public Gene Expression Omnibus and ArrayExpress repositories, comprising a total of 2,600 AD, LBD, and ALS-FTD patients and age-matched controls which passed our stringent quality control. Here, we provide the results of differential expression analyses with data quality reports for each of these 60 datasets. This atlas of differential expression across AD, LBD, and ALS-FTD may guide future work to elucidate the pathophysiological drivers of these individual diseases as well as the common substrate of neurodegeneration.
DOI: 10.6084/m9.figshare.19948121.v1
title: TCGA-BRCA.mutect2_snv.tsv

description: This is the SNP data downloaded from Xena public database
DOI: 10.6084/m9.figshare.28735357.v1
title: Additional file 5 of Mitochondrial genome assembly of the Chinese endemic species of Camellia luteoflora and revealing its repetitive sequence mediated recombination, codon preferences and MTPTs

description: Supplementary Material 5: Table S2. Distribution of repetitive sequences;
DOI: 10.6084/m9.figshare.29114567.v3
title: <b>How do Large Language Models Understand Trajectory Data? Insights from Various Trajectory Formats</b><b>and Response Strategies for Transportation Mode Detection</b>

description: The effectiveness of large language models (LLMs) in transportation mode detection remains underexplored, creating a significant research gap in understanding how these models process trajectory data. This study uses the Geolife dataset to investigate the ability of pre-trained and fine-tuned LLMs to detect transportation modes across 14 trajectory formats, categorized into overview information, coordinate-based, and spatial encoding. Meanwhile , two response strategies are compared: direct answer and Chain-of-Thought (CoT) reasoning. The results show that fine-tuning significantly enhances the classification performance for all trajectory formats. Among the evaluated formats, the coordinate-based format with timestamps achieves the highest accuracy of 85.2% after fine-tuning using the direct answer strategy. The direct answer strategy proves to be more effective than the CoT strategy, reaching an average 49.0% improvement in accuracy via fine-tuning. Additionally, the model exhibits systematic misclassification patterns, reflecting challenges in distinguishing between transportation modes with similar movement characteristics. Furthermore, our analysis reveals that hallucinations are prevalent in CoT responses, particularly of the types of input-conflicting hallucinations and factual inaccuracies, which increase the likelihood of misclassification. These findings highlight the potential of LLMs in transportation mode detection while emphasizing the need for enhanced trajectory formats, improved response strategies, and strategies to mitigate hallucinations.
DOI: 10.17632/y2x7c6x76n
title: Emerging therapy for dengue

description: Dengue fever is acute febrile diseases, it’s caused by one of four closely related virus serotypes of the genusare Flavi virus, family Flaviviridae. Each serotype is sufficiently different that there is no cross-protection and epidemics caused by multiple serotypes can occurs. It’s transmitted to humans by the mosquito.
The incidence of dengue has grown around the world in recent a period of ten years. However, several classes of agents are in under investigation as potential anti-dengue drugs, including direct host modulators, antivirals, and RNAi therapeutics. These anti-dengue drugs in development will be reviewed here.
Keywords: Dengue viruses, Aedes mosquito, Treatment
DOI: 10.6084/m9.figshare.22226563.v1
title: Vegetation and soil data: mangrove plantations in Bangladesh

description: In this study, we assessed three carbon pools (aboveground and belowground biomass of trees, saplings, and mangrove soils) of mangrove plantations in Bangladesh. We sampled trees and saplings from 72 nested circular plots (each plot consists of three sub-plots; the total number of subplots: 216) from the plantations of ages 5 to 42 years in three geomorphic regions (24 plots for each region - East, Central, and West) and 15 plots (total number of subplots: 45) from the natural mangroves (located in the West coast) in the Bangladesh Delta. Tree and sapling attributes were assessed from 10m and 3m radius plots, respectively, at selected sampling sites in 2020. We found that the mean ecosystem carbon stock of 5–42 years aged (average age: 25.5 years) mangrove plantations was 190.1 (±30.3) Mg C ha−1, with ecosystem carbon stocks varying regionally. Plantations at age 5 to 42 years achieved 52% of the mean ecosystem carbon stock calculated for the reference site (Sundarbans natural mangroves in Bangladesh).
DOI: 10.6084/m9.figshare.6066533.v3
title: Serendipity Movie Test Data

description: <b>Serendipity Movie Test Data</b> The serendipity relatedness problem consists of, given an entity, to find another entity that is serendipitously related to it. The strategy adopted consists of diving the dataset in partitions based in a global feature, genre, and linking entities from different partitions according to connectivity criteria. This dataset supports the evaluation of approaches that address the serendipity relatedness problem. It covers the movie domain and uses data available in DBpedia and LinkedMDB, which are popular reference linked data datasets for this domain. The dataset contains 404 entities of the movies domain split in 15 cinematographic genres. For every entity, the dataset contains: (1) its linked data URIs; (2) its linked data datagraph, encompassing the network of entities that surrounds it; (3) a list of serendipitously suggested movies. And for every entity pair, the dataset contains: (1) the linked data paths that connect the pair; (2) a score according to the extracted paths. The data is compressed in .zip format and can be uncompressed by standard compression utilities. The data are split into two archives: <b>dataset.zip:</b> contains raw data (.json, .ttl). The underlying data and code can be accessed through standard text edit software.
DOI: 10.17605/osf.io/xs6cr
title: Tracing Mitochondrial Marks of Neuronal Aging in iPSCs-Derived Neurons and Directly Converted Neurons - Data

description: This study aimed to determine if neurons derived from induced pluripotent stem cells (iPSCsNs) and directly converted neurons (iNs) from the same source cells exhibit changes in mitochondrial properties related to aging. This research addresses the uncertainty around whether aged iPSCsNs retain aging-associated mitochondrial impairments upon transitioning through pluripotency while direct conversion maintains these impairments. We found that both aged models exhibited characteristics of aging, such as decreased ATP, mitochondrial membrane potential, respiration, NAD+/NADH ratio, and increased radicals and mitochondrial mass. In addition, both neuronal models showed a fragmented mitochondrial network. However, aged iPSCsNs did not exhibit a metabolic shift towards glycolysis, unlike aged iNs. Furthermore, mRNA expression differed significantly between aged iPSCsNs and aged iNs. The study concludes that aged iPSCsNs may differ in transcriptomics and the aging-associated glycolytic shift but can be a valuable tool for studying specific feature of mitochondrial neuronal aging in vitro alongside aged iNs.
DOI: 10.17632/mc4s7zvx9c
title: CNH-PSX

description: The categorized financial news has been used significantly in stock prediction. Therefore, PSX-related financial news is categorized into the market, sector, and stock categories. Moreover, sector and stock categories are further filtered to represent the specific sectors and stocks categories. The finalized datasets are stored into two (.csv) files.
DOI: 10.17632/n4tfmdd8js
title: Czech Universities SM Data 2022

description: The conducted research aims to describe the posting practices and selected engagement metrics of the Facebook and Instagram profiles of top universities from the Czech Republic in 2022. First, to capture the quantitative data researchers used the analytical tool ZoomSphere (2022), which allows selected social networks to be investigated. This tool captures statistics about only publicly available social media posts through the API platform.
Second, the researchers simultaneously collected and mapped posts published by selected universities from September to December 2022 in detail .
DOI: 10.17632/vbp83jjr8h
title: LINF_170005500

description: DnaJ domain-containing protein | JDP26 | J26; Leishmania infantum (strain JPCM5)
DOI: 10.17632/xbfbcy5bhv
title: Data on Internet Addiction and Mental Health among university students in Malawi

description: The data about internet addiction and mental health symptoms collected from a set of randomly sampled 984 students from both public and private universities in Malawi.
DOI: 10.17632/yyn2g83vsy
title: Microplastic images and Automatic classification by deep learning

description: Real images of microplastics and algae from sediment of a freshwater reservoir, obtained by optical microscopy ("Microplastics and algae.zip"). Also, a code for automated classification of microplastics and algae using Deep Learning ("[code] Microplastics_algae_classification.ipynb - Colab.pdf").
DOI: 10.6084/m9.figshare.16821361.v1
title: Integrating occupancy models - Data and Novel Code

description: Supplemental information for the Ecosphere manuscript "Integrating multi-method surveys and recovery trajectories into occupancy models". Includes detection-non detection data for <i>Pekania pennanti</i> in Oregon from cameras and detection dogs, a spatial extent model using reaction-diffusion equations, and novel occupancy code.
DOI: 10.6084/m9.figshare.28268372.v2
title: Global Litter Decomposition Dataset and Pattern Predictions

description: This dataset contains experimental data on global litter decomposition under natural conditions prior to 2022.We have generated a global map of leaf litter decomposition with a resolution of 0.1 degrees. For more details, please refer to https://doi.org/10.1073/pnas.2420664122.
DOI: 10.6084/m9.figshare.28909199.v2
title: Exploring the decline of shark populations in Santiago Island, Cabo Verde: insights from local fishers’ knowledge and perspectives

description: Cabo Verde is a well-known marine megafauna biodiversity hotspot in the Eastern Atlantic Ocean. As a Small Island Developing State (SIDS), fishing is one of its most important economic activities and a major source of animal protein. Yet, the interaction and impacts of the artisanal fisheries on shark species are poorly known in this region. To fill this gap, between April and June 2024, we conducted 152 face-to-face interviews with fishers from the 10 main fishing communities on Santiago Island, Cabo Verde. Most respondents (95%) reported the presence of sharks in their fishing grounds all year round (59%) and at certain times of the year (41%). Eighty-five percent indicated that they catch sharks, but the majority (63%) said they do so unintentionally. The catch is made up of at least 18 species of shark, almost all of which are threatened with extinction, according to the International Union for the Conservation of Nature (IUCN). Most fishers (80%) have noticed a reduction in the number of sharks over the last 15 years, attributing the cause to fishing (96%) mainly by the international fleet and around half (51%) believe that it will continue to reduce over the next 15 years. Nevertheless, 33% of the fishers interviewed declared that they do not support shark conservation. Although fishers are valuable sources of information, the present results also show the need to improve fisher's perceptions of sharks and involve them in decision-making processes and management measures to reduce the impacts of artisanal fishing on endangered species.