cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8067407
title: GWAS dataset with simulated binary phenotypes for 1000 Genome Project

description: Phenotypes in this dataset are generated by simulating quantitative blood lipid level phenotype using the method introduced in by (https://app.terra.bio/#workspaces/amp-t2d-op/2019_ASHG_Reproducible_GWAS-V2), and binarized to be suitable as a test case for GWAS methods. ALL.shapeit2_integrated_v1a.GRCh38.20181129.phased.rsid files and allpopid.txt are the 1000 Genome Project reference data used for generating MDS plot in https://github.com/csbio/BridGE-Python
DOI: 10.5281/zenodo.8067488
title: HEB-MF

description: HEB-MF
DOI: 10.5281/zenodo.8067487
title: HEB-MF

description: HEB-MF
DOI: 10.5281/zenodo.8067472
title: Total Load Profiles by Balancing Authority in the Western United States for GODEEEP

description: This dataset contains time-series of total load profiles across Balancing Authorities (BAs) in the western United States (U.S.) electricity grid interconnection for the years 2025, 2030, 2035, 2040, 2045, and 2050. The data is provided for two different socioeconomic pathways and one climate scenario. The socioeconomic pathways -- Business-As-Usual (BAU_Climate) and Net-Zero without CCS (NetZeroNoCCS_Climate) -- are described by https://doi.org/10.5281/zenodo.7838871. The climate scenario -- Representative Concentration Pathway 8.5 hotter (rcp85hotter) -- is described by https://doi.org/10.57931/1885756. Transportation loads in this dataset are derived from https://doi.org/10.5281/zenodo.8065137. Non-transportation loads are derived using the Total Electricity Loads (TELL) model which is available here. The data was post-processed using a Jupyter notebook available here. A brief summary of the files and directories in this data package is provided below. Each file in the "<em>total_loads</em>" subdirectory is a comma-separated-value (CSV) format with the following columns: <strong>BA</strong> - Acronym of the balancing authority (BA) for this data point <strong>Time_UTC</strong> - Timestamp of the hourly data in UTC format <strong>Non-Transportation_Load_MWh</strong> - Total hourly load in the BA from non-transportation sources in megawatt hours <strong>Transportation_Load_MWh</strong> - Total hourly load in the BA from transportation sources in megawatt hours <strong>Total_Load_MWh</strong> - Sum of the load from non-transportation and transportation sources in megawatt hours Data in the "<em>gridview_ready_total_loads</em>" subdirectory contains the hourly total loads by BA in a format that is ready for ingestion into the GridView production cost model. This research was supported by the Grid Operations, Decarbonization, Environmental and Energy Equity Platform (GODEEEP) Investment, under the Laboratory Directed Research and Development (LDRD) Program at Pacific Northwest National Laboratory (PNNL). PNNL is a multi-program national laboratory operated for the U.S. Department of Energy (DOE) by Battelle Memorial Institute under Contract No. DE-AC05-76RL01830.
DOI: 10.5281/zenodo.8067471
title: Total Load Profiles by Balancing Authority in the Western United States for GODEEEP

description: This dataset contains time-series of total load profiles across Balancing Authorities (BAs) in the western United States (U.S.) electricity grid interconnection for the years 2025, 2030, 2035, 2040, 2045, and 2050. The data is provided for two different socioeconomic pathways and one climate scenario. The socioeconomic pathways -- Business-As-Usual (BAU_Climate) and Net-Zero without CCS (NetZeroNoCCS_Climate) -- are described by https://doi.org/10.5281/zenodo.7838871. The climate scenario -- Representative Concentration Pathway 8.5 hotter (rcp85hotter) -- is described by https://doi.org/10.57931/1885756. Transportation loads in this dataset are derived from https://doi.org/10.5281/zenodo.8065137. Non-transportation loads are derived using the Total Electricity Loads (TELL) model which is available here. The data was post-processed using a Jupyter notebook available here. A brief summary of the files and directories in this data package is provided below. Each file in the "<em>total_loads</em>" subdirectory is a comma-separated-value (CSV) format with the following columns: <strong>BA</strong> - Acronym of the balancing authority (BA) for this data point <strong>Time_UTC</strong> - Timestamp of the hourly data in UTC format <strong>Non-Transportation_Load_MWh</strong> - Total hourly load in the BA from non-transportation sources in megawatt hours <strong>Transportation_Load_MWh</strong> - Total hourly load in the BA from transportation sources in megawatt hours <strong>Total_Load_MWh</strong> - Sum of the load from non-transportation and transportation sources in megawatt hours Data in the "<em>gridview_ready_total_loads</em>" subdirectory contains the hourly total loads by BA in a format that is ready for ingestion into the GridView production cost model. This research was supported by the Grid Operations, Decarbonization, Environmental and Energy Equity Platform (GODEEEP) Investment, under the Laboratory Directed Research and Development (LDRD) Program at Pacific Northwest National Laboratory (PNNL). PNNL is a multi-program national laboratory operated for the U.S. Department of Energy (DOE) by Battelle Memorial Institute under Contract No. DE-AC05-76RL01830.
DOI: 10.5517/ccdc.csd.cc2d5d77
title: CCDC 2209718: Experimental Crystal Structure Determination

description: Related Article: Tomoya Yokota, Hyuma Masu, Takayoshi Arai|2023|J.Org.Chem.|88|7872|doi:10.1021/acs.joc.2c02911
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.22779705
title: Risk assessment of 3-MCPD esters and glycidyl esters from the formulas for infants and young children up to 36 months of age

description: Esters of 2-monochloropropane-1,2-diol (2-MCPD), 3- monochloropropane-1,2-diol (3-MCPD), and glycidol are present in infant formulas, follow-on foods and similar compositions. They arise mainly from the vegetable oil content and may cause harmful effects in consumers. The contents of these substances in formulas were determined indirectly by converting the esters to the free form, followed by derivatization and analysis by gas chromatography-tandem mass spectrometry (GC-MS/MS). The validation results demonstrate that the method had sufficient specificity and adequate accuracy. The limits of detection (LOD) and limits of quantification (LOQ) for each of 2­MCPDE, 3­MCPDE, and GE were 1.5 and 5 µg/kg, respectively. Formula intake by children up to 36 months of age was surveyed, and the data was used to assess the risks due to 3-MCPD esters (3-MCPDE) and glycidyl esters (GE). The mean exposure dose of 3-MCPDE for different age groups ranged from 0.51 to 1.13 µg/kg bw per day. The corresponding mean GE exposure ranged from 0.031 to 0.069 µg/kg bw per day. Neither mean values nor the percentile 95% values of 3-MCPDE exposure doses exceed the recommended provisional maximum tolerable daily intake (PMTDI).
DOI: 10.6084/m9.figshare.22779705.v1
title: Risk assessment of 3-MCPD esters and glycidyl esters from the formulas for infants and young children up to 36 months of age

description: Esters of 2-monochloropropane-1,2-diol (2-MCPD), 3- monochloropropane-1,2-diol (3-MCPD), and glycidol are present in infant formulas, follow-on foods and similar compositions. They arise mainly from the vegetable oil content and may cause harmful effects in consumers. The contents of these substances in formulas were determined indirectly by converting the esters to the free form, followed by derivatization and analysis by gas chromatography-tandem mass spectrometry (GC-MS/MS). The validation results demonstrate that the method had sufficient specificity and adequate accuracy. The limits of detection (LOD) and limits of quantification (LOQ) for each of 2­MCPDE, 3­MCPDE, and GE were 1.5 and 5 µg/kg, respectively. Formula intake by children up to 36 months of age was surveyed, and the data was used to assess the risks due to 3-MCPD esters (3-MCPDE) and glycidyl esters (GE). The mean exposure dose of 3-MCPDE for different age groups ranged from 0.51 to 1.13 µg/kg bw per day. The corresponding mean GE exposure ranged from 0.031 to 0.069 µg/kg bw per day. Neither mean values nor the percentile 95% values of 3-MCPDE exposure doses exceed the recommended provisional maximum tolerable daily intake (PMTDI).
DOI: 10.5281/zenodo.8061692
title: Dataset for "Spatiotemporal impacts of land conversion on avian functional and phylogenetic diversities''

description: The dataset was obtained with information from: The National Land Cover Database (NLCD), free online available, and released by Dewitz and U.S. Geological Survey (2019) (https://www.usgs.gov/centers/eros/science/national-land-cover-database) The North American Breeding Bird Survey Dataset, free online available, and released by Ziolkowski Jr. DJ, Lutmerding M, Aponte VI, and Hudson M-A R (2022) North American Breeding Bird Survey Dataset 1966 - 2021: U.S. Geological Survey data release (https://www.usgs.gov/centers/eesc/science/north-american-breeding-bird-survey) The AVONET Dataset, published by Tobias JA, Sheard C, Pigot AL, Devenish AJM, Yang J, Sayol F et al. (2022) AVONET: morphological, ecological and geographical data or all birds. Ecology Letters, 25, 581– 597 (https://onlinelibrary.wiley.com/doi/full/10.1111/ele.13898) Data on life history traits of birds, assembled by the hosting lab members (including myself) Maximum clade credibility phylogenies (CCP) based on the pseudo-posterior distribution of trees available at www.birdtree.org, developed by the hosting lab. Data was extracted and structured to be used to reach the results from the manuscript "<strong>Spatiotemporal impacts of land conversion on avian functional and phylogenetic diversities</strong>". This manuscript is part of the second and fifth Working Packages (WP2 and WP5) of the project ENVIRON_CHANGE, financed by the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101030199. The aim of the WP2 was to estimate changes in phylogenetic and functional diversities across land use change and describe its temporal dynamics. The WP5 was dedicated to disseminate and communicate the research.
DOI: 10.5281/zenodo.8061693
title: Dataset for "Spatiotemporal impacts of land conversion on avian functional and phylogenetic diversities''

description: The dataset was obtained with information from: The National Land Cover Database (NLCD), free online available, and released by Dewitz and U.S. Geological Survey (2019) (https://www.usgs.gov/centers/eros/science/national-land-cover-database) The North American Breeding Bird Survey Dataset, free online available, and released by Ziolkowski Jr. et al. (2022). (https://www.usgs.gov/centers/eesc/science/north-american-breeding-bird-survey) The AVONET Dataset, published by Tobias JA, Sheard C, Pigot AL, Devenish AJM, Yang J, Sayol F et al. (2022) AVONET: morphological, ecological and geographical data or all birds. Ecology Letters, 25, 581– 597 (https://onlinelibrary.wiley.com/doi/full/10.1111/ele.13898) Data on life history traits of birds, assembled by the hosting lab members (including myself) Maximum clade credibility phylogenies (CCP) based on the pseudo-posterior distribution of trees available at www.birdtree.org, developed by the hosting lab. Data was extracted and structured to be used to reach the results from the manuscript "<strong>Spatiotemporal impacts of land conversion on avian functional and phylogenetic diversities</strong>". This manuscript is part of the second and fifth Working Packages (WP2 and WP5) of the project ENVIRON_CHANGE, financed by the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101030199. The aim of the WP2 was to estimate changes in phylogenetic and functional diversities across land use change and describe its temporal dynamics. The WP5 was dedicated to disseminate and communicate the research.
DOI: 10.5281/zenodo.8067493
title: Dataset for "Spatiotemporal impacts of land conversion on avian functional and phylogenetic diversities''

description: The dataset was obtained with information from: The National Land Cover Database (NLCD), free online available, and released by Dewitz and U.S. Geological Survey (2019) (https://www.usgs.gov/centers/eros/science/national-land-cover-database) The North American Breeding Bird Survey Dataset, free online available, and released by Ziolkowski Jr. DJ, Lutmerding M, Aponte VI, and Hudson M-A R (2022) North American Breeding Bird Survey Dataset 1966 - 2021: U.S. Geological Survey data release (https://www.usgs.gov/centers/eesc/science/north-american-breeding-bird-survey) The AVONET Dataset, published by Tobias JA, Sheard C, Pigot AL, Devenish AJM, Yang J, Sayol F et al. (2022) AVONET: morphological, ecological and geographical data or all birds. Ecology Letters, 25, 581– 597 (https://onlinelibrary.wiley.com/doi/full/10.1111/ele.13898) Data on life history traits of birds, assembled by the hosting lab members (including myself) Maximum clade credibility phylogenies (CCP) based on the pseudo-posterior distribution of trees available at www.birdtree.org, developed by the hosting lab. Data was extracted and structured to be used to reach the results from the manuscript "<strong>Spatiotemporal impacts of land conversion on avian functional and phylogenetic diversities</strong>". This manuscript is part of the second and fifth Working Packages (WP2 and WP5) of the project ENVIRON_CHANGE, financed by the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101030199. The aim of the WP2 was to estimate changes in phylogenetic and functional diversities across land use change and describe its temporal dynamics. The WP5 was dedicated to disseminate and communicate the research.
DOI: 10.5281/zenodo.8060648
title: Figure files for High-impedance surface acoustic wave resonators

description: This repository contains .fig (MATLAB) files corresponding to the figures in 'High-impedance surface acoustic wave resonators.' <br> The raw data are available from the corresponding author upon reasonable request.<br>
DOI: 10.5281/zenodo.8060647
title: Figure files for High-impedance surface acoustic wave resonators

description: This repository contains .fig (MATLAB) files corresponding to the figures in 'High-impedance surface acoustic wave resonators.' <br> The raw data are available from the corresponding author upon reasonable request.<br>
DOI: 10.5281/zenodo.8067537
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Friedrich von Berchtold, http://www.wikidata.org/entity/Q940150. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q940150
DOI: 10.25345/c5cf9jh43
title: MassIVE MSV000092235 - High-throughput Extracellular Matrix Proteomics of Human Lungs Enabled by Photocleavable Surfactant and diaPASEF
title: High-throughput Extracellular Matrix Proteomics of Human Lungs Enabled by Photocleavable Surfactant and diaPASEF. Samples include Decell fraction and Azo ("ECM") fraction for n=3 biological replicates (YGL-02, -05, and -08). Central ("C") and Peripheral ("P") regions of the left upper lobe from each donor was analyzed.
DOI: 10.5281/zenodo.8067541
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Marie Dvořáková, http://www.wikidata.org/entity/Q13426175. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q13426175
DOI: 10.5281/zenodo.8067540
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Marie Dvořáková, http://www.wikidata.org/entity/Q13426175. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q13426175
DOI: 10.5281/zenodo.8067549
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Bruno Tavares Carreiro, http://www.wikidata.org/entity/Q112586227. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q112586227
DOI: 10.5281/zenodo.8067548
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Bruno Tavares Carreiro, http://www.wikidata.org/entity/Q112586227. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q112586227
DOI: 10.5281/zenodo.5140618
title: Large positive ecological changes of small urban greening actions

description: <strong>Updated data and R codes associated with our article <em>Large positive ecological changes of small urban greening actions</em>:</strong> <strong>Ecological Solutions and Evidence</strong> <strong>Abstract</strong> The detrimental effects of human-induced environmental change on people and other species are acutely manifested in urban environments. While urban greenspaces are known to mitigate these effects and support functionally diverse ecological communities, evidence of the ecological outcomes of urban greening remains scarce. We use a longitudinal observational design to provide empirical evidence of the ecological benefits of greening actions. We show how a small greening action quickly led to large positive changes in the richness, demographic dynamics, and network structure of a depauperate insect community. We demonstrate how large ecological benefits may be derived from investing in small greening actions and how these contribute to bring indigenous species back to greenspaces where they have become rare or locally extinct. Our findings provide crucial evidence that support best practice in greenspace design and contribute to re-invigorate policies aimed at mitigating the negative impacts of urbanisation on people and other species.
DOI: 10.5281/zenodo.5140619
title: Large positive ecological changes of small urban greening actions

description: <strong>Data and R codes associated with our article <em>Large positive ecological changes of small urban greening actions</em>:</strong> <strong>https://www.biorxiv.org/content/10.1101/2021.07.23.453468v1</strong> <strong>Abstract</strong> The detrimental effects of human-induced environmental change on people and other species are acutely manifested in urban environments. While urban greenspaces are known to mitigate these effects and support functionally diverse ecological communities, evidence of the ecological outcomes of urban greening remains scarce. We use a longitudinal observational design to provide empirical evidence of the ecological benefits of greening actions. We show how a small greening action quickly led to large positive changes in the richness, demographic dynamics, and network structure of a depauperate insect community. We demonstrate how large ecological benefits may be derived from investing in small greening actions and how these contribute to bring indigenous species back to greenspaces where they have become rare or locally extinct. Our findings provide crucial evidence that support best practice in greenspace design and contribute to re-invigorate policies aimed at mitigating the negative impacts of urbanisation on people and other species.
DOI: 10.5281/zenodo.8067529
title: Large positive ecological changes of small urban greening actions

description: <strong>Updated data and R codes associated with our article <em>Large positive ecological changes of small urban greening actions</em>:</strong> <strong>Ecological Solutions and Evidence</strong> <strong>Abstract</strong> The detrimental effects of human-induced environmental change on people and other species are acutely manifested in urban environments. While urban greenspaces are known to mitigate these effects and support functionally diverse ecological communities, evidence of the ecological outcomes of urban greening remains scarce. We use a longitudinal observational design to provide empirical evidence of the ecological benefits of greening actions. We show how a small greening action quickly led to large positive changes in the richness, demographic dynamics, and network structure of a depauperate insect community. We demonstrate how large ecological benefits may be derived from investing in small greening actions and how these contribute to bring indigenous species back to greenspaces where they have become rare or locally extinct. Our findings provide crucial evidence that support best practice in greenspace design and contribute to re-invigorate policies aimed at mitigating the negative impacts of urbanisation on people and other species.
DOI: 10.6084/m9.figshare.23501957
title: N<sup>6</sup>-methyladenosine is required for efficient RNA synthesis of Ebola virus and other haemorrhagic fever viruses

description: N<sup>6</sup>-methyladenosine (m<sup>6</sup>A) is one of the most abundant modifications of cellular RNA, where it serves various functions. m<sup>6</sup>A methylation of many viral RNA species has also been described; however, little is known about the m<sup>6</sup>A epitranscriptome of haemorrhagic fever-causing viruses like Ebola virus (EBOV). Here, we analysed the importance of the methyltransferase METTL3 for the life cycle of this virus. We found that METTL3 interacts with the EBOV nucleoprotein and the transcriptional activator VP30 to support viral RNA synthesis, and that METTL3 is recruited into EBOV inclusions bodies, where viral RNA synthesis occurs. Analysis of the m<sup>6</sup>A methylation pattern of EBOV mRNAs showed that they are methylated by METTL3. Further studies revealed that METTL3 interaction with the viral nucleoprotein, as well as its importance for RNA synthesis and protein expression, is also observed for other haemorrhagic fever viruses such as Junín virus (JUNV) and Crimean-Congo haemorrhagic fever virus (CCHFV). The negative effects on viral RNA synthesis due to loss of m<sup>6</sup>A methylation are independent of innate immune sensing, as METTL3 knockout did not affect type I interferon induction in response to viral RNA synthesis or infection. Our results suggest a novel function for m<sup>6</sup>A that is conserved among diverse haemorrhagic fever-causing viruses (i.e. EBOV, JUNV and CCHFV), making METTL3 a promising target for broadly-acting antivirals.