cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/3617a4e57626bc40d706444fb048b484
title: Valleywide Bird Survey, Hubbard Brook Experimental
    Forest, 1999-present

description: This data set includes bird point-count data collected
      during the breeding seasons (May-July) of 1999-2013 at 373
      locations throughout Hubbard Brook Experimental
      Forest.
      These data were gathered as part of the Hubbard Brook
      Ecosystem Study (HBES). The HBES is a collaborative effort at
      the Hubbard Brook Experimental Forest, which is operated and
      maintained by the USDA Forest Service, Northern Research
      Station.
DOI: 10.6073/pasta/c121cd00fe3fff4a812b96cebb31281b
title: Nitrate Isotopic Composition, Hubbard Brook Experimental
    Forest, Watershed 3, 2011

description: Despite decades of measurements, the nitrogen balance
      of temperate forest catchments remains poorly understood.
      Atmospheric nitrogen deposition often greatly exceeds
      streamwater nitrogen losses; the fate of the remaining
      nitrogen is highly uncertain. Gaseous losses of nitrogen to
      denitrification are especially poorly documented and are
      often ignored. Here, we provide isotopic evidence (δ15NNO3
      and δ18ONO3) from shallow groundwater at the Hubbard Brook
      Experimental Forest indicating extensive denitrification
      during midsummer, when transient, perched patches of
      saturation developed in hillslopes, with poor hydrological
      connectivity to the stream, while streamwater showed no
      isotopic evidence of denitrification. During small rain
      events, precipitation directly contributed up to 34% of
      streamwater nitrate, which was otherwise produced by
      nitrification. Together, these measurements reveal the
      importance of denitrification in hydrologically disconnected
      patches of shallow groundwater during midsummer as largely
      overlooked control points for nitrogen loss from temperate
      forest catchments.
      These data were gathered as part of the Hubbard Brook
      Ecosystem Study (HBES). The HBES is a collaborative effort at
      the Hubbard Brook Experimental Forest, which is operated and
      maintained by the USDA Forest Service, Northern Research
      Station.
DOI: 10.6073/pasta/de3b30fe3096b44686725e8720c79898
title: Bedrock geologic map of Hubbard Brook Experimental
    Forest and maps of fractures and geology in roadcuts along
    Interstate-93, Grafton County, New Hampshire.

description: Bedrock Geologic Map of Hubbard Brook Experimental
      Forest and maps of fractures and geology in roadcuts along
      Interstate-93, Grafton County, New Hampshire. Two maps are
      included in this data set. Interstate I-93 map includes plots
      summarizing data for fractures shown on map roadcuts.
      Citation: Barton, C. C., R. H. Camerlo and S. W.
      Bailey. 1997. Bedrock Geologic Map of Hubbard Brook
      Experimental Forest and maps of fractures and geology in
      roadcuts along Interstate-93, Grafton County, New Hampshire.
      Sheet 1, Scale 1:12,000; Sheet 2, Scale 1:200. U.S.
      Geological Survey, Miscellaneous Investigations Series, Map
      I-2562
      These data were gathered as part of the Hubbard Brook
      Ecosystem Study (HBES). The HBES is a collaborative effort at
      the Hubbard Brook Experimental Forest, which is operated and
      maintained by the USDA Forest Service, Northern Research
      Station.
DOI: 10.5281/zenodo.2537055
title: GATEMAN project, GNSS raw data in presence of spoofing

description: GNSS raw data generated during the in-lab validation activities of spoofing detection and localization performed in the frame of the <strong>GATEMAN</strong> project. These files are grouped for each type of validation scenario defined. A word file describing the test setup is included.
DOI: 10.5281/zenodo.2537099
title: FAT or FiTT: Are anvil clouds or the tropopause temperature-invariant? (manuscript data)

description: Cloud-resolving model output used in the manuscript "FAT or FiTT: Are anvil clouds or the tropopause temperature-invariant?" by Seeley et al.
DOI: 10.5281/zenodo.2537101
title: Data sets for modeling double strand break susceptibility and interrogating structural variation in cancer

description: This is data used and produced for the study of "Modeling double strand break susceptibility to interrogate structural variation in cancer". 

<strong>Background: </strong>Structural variants (SVs) are known to play important roles in a variety of cancers, but their origins and functional consequences are still poorly understood. Many SVs are thought to emerge from errors in the repair processes following DNA double strand breaks (DSBs).

<strong>Results:</strong> We used experimentally quantified DSB frequencies in cell lines with matched chromatin and sequence features to derive the first quantitative genome-wide models of DSB susceptibility. These models are accurate and provide novel insights into the mutational mechanisms generating DSBs. Models trained in one cell type can be successfully applied to others, but a substantial proportion of DSBs appear to reflect cell type specific processes. Using model predictions as a proxy for susceptibility to DSBs in tumours, many SV-enriched regions appear to be poorly explained by selectively neutral mutational bias alone. A substantial number of these regions show unexpectedly high SV breakpoint frequencies given their predicted susceptibility to mutation and are therefore credible targets of positive selection in tumours. These putatively positively selected SV hotspots are enriched for genes previously shown to be oncogenic. In contrast, several hundred regions across the genome show unexpectedly low levels of SVs, given their relatively high susceptibility to mutation. These novel coldspot regions appear to be subject to purifying selection in tumours and are enriched for active promoters and enhancers.

<strong>Conclusions:</strong> We conclude that models of DSB susceptibility offer a rigorous approach to the inference of SVs putatively subject to selection in tumours.
DOI: 10.5281/zenodo.2537100
title: Data sets for modeling double strand break susceptibility and interrogating structural variation in cancer

description: This is data used and produced for the study of "Modeling double strand break susceptibility to interrogate structural variation in cancer". 

<strong>Background: </strong>Structural variants (SVs) are known to play important roles in a variety of cancers, but their origins and functional consequences are still poorly understood. Many SVs are thought to emerge from errors in the repair processes following DNA double strand breaks (DSBs).

<strong>Results:</strong> We used experimentally quantified DSB frequencies in cell lines with matched chromatin and sequence features to derive the first quantitative genome-wide models of DSB susceptibility. These models are accurate and provide novel insights into the mutational mechanisms generating DSBs. Models trained in one cell type can be successfully applied to others, but a substantial proportion of DSBs appear to reflect cell type specific processes. Using model predictions as a proxy for susceptibility to DSBs in tumours, many SV-enriched regions appear to be poorly explained by selectively neutral mutational bias alone. A substantial number of these regions show unexpectedly high SV breakpoint frequencies given their predicted susceptibility to mutation and are therefore credible targets of positive selection in tumours. These putatively positively selected SV hotspots are enriched for genes previously shown to be oncogenic. In contrast, several hundred regions across the genome show unexpectedly low levels of SVs, given their relatively high susceptibility to mutation. These novel coldspot regions appear to be subject to purifying selection in tumours and are enriched for active promoters and enhancers.

<strong>Conclusions:</strong> We conclude that models of DSB susceptibility offer a rigorous approach to the inference of SVs putatively subject to selection in tumours.
DOI: 10.6073/pasta/a5b000c2fc239444110ca1f2b0250f70
title: Weather data from Wine Spring Knob, Nantahala National Forest, North Carolina

description: This data set contains measurements of air temperature, relative humidity, wind speed, wind direction, PAR density, and rainfall from Wine Spring Knob, Nantahala National Forest, NC. Air temperature, relative humidity, wind speed, and PAR density are measured every 60 seconds with average, minimum, maximum, and discrete top of the hour values saved to the output data table hourly. Wind direction is measured every 60 seconds with the average value saved to the output data table every hour. Hourly rainfall is totalized and a continuous 24 hour rainfall value is calculated. Calculations for dew point, heat index, wind chill, and wind vector are calculated hourly and saved to the output data table.
DOI: 10.21227/e470-y130
title: Artificiality

description: This in an artificial imbalanced data set.
DOI: 10.3886/e108021v1-10081
title: Economic consequences of state failure; legal capacity, regulatory activity, and market integration in Poland, 1505-1772

description: This is the replication package for replication of the results of the JEH article Economic consequences of state failure; legal capacity, regulatory activity, and market integration in Poland, 1505-1772.<br>
DOI: 10.6073/pasta/c225e280c0dea4c1a3d54d6d3f94972d
title: Climate Change Across Seasons Experiment (CCASE) Sapling
    Study at the Hubbard Brook Experimental Forest: Root
    Damage

description: Root damage, as relative electrolyte leakage, was
      assessed following winter freeze-thaw cycle experimental
      treatments in 2014 and 2015. There were seven treatments for
      each species of maple. For each species, ten saplings
      experienced ambient temperatures (reference), ten experienced
      growing season warming with no induced freeze-thaw cycles in
      winter (warmed), ten in each of four groups experienced
      warming in the growing season coupled with two, four, six, or
      eight soil freeze-thaw cycles in winter (warmed + 2 FTC,
      warmed + 4 FTC, warmed + 6 FTC, warmed + 8 FTC), and ten
      experienced snow removal in winter with ambient temperatures
      in the growing-season (snow removal).
      These data were gathered as part of the Hubbard Brook
      Ecosystem Study (HBES). The HBES is a collaborative effort at
      the Hubbard Brook Experimental Forest, which is operated and
      maintained by the USDA Forest Service, Northern Research
      Station.
DOI: 10.14469/hpc/4942
title: 5Br2 + 2,4,6-tributylbenzene in CCl4, wheland Intermediate WI-II ΔG = -26445.884641

description: Gaussian Calculation
DOI: 10.6073/pasta/2eceaeeee2c88632c0a889412c4f5ef2
title: Climate Change Across Seasons Experiment (CCASE) Sapling
    Study at the Hubbard Brook Experimental Forest: Foliar
    Nitrogen

description: Foliar nitrogen concentrations of red maple and sugar
      maple saplings experiencing combinations of soil warming and
      winter freeze-thaw cycles were measured during the growing
      season of 2014 and 2015 as an indicator of plant nitrogen
      status.
      There were seven treatments for each species of maple.
      For each species, ten saplings experienced ambient
      temperatures (reference), ten experienced growing season
      warming with no induced freeze-thaw cycles in winter
      (warmed), ten in each of four groups experienced warming in
      the growing season coupled with two, four, six, or eight soil
      freeze-thaw cycles in winter (warmed + 2 FTC, warmed + 4 FTC,
      warmed + 6 FTC, warmed + 8 FTC), and ten experienced snow
      removal in winter with ambient temperatures in the
      growing-season (snow removal).
      These data were gathered as part of the Hubbard Brook
      Ecosystem Study (HBES). The HBES is a collaborative effort at
      the Hubbard Brook Experimental Forest, which is operated and
      maintained by the USDA Forest Service, Northern Research
      Station.
DOI: 10.6073/pasta/3328c349f2a67068e12218498afc159d
title: Climate Change Across Seasons Experiment (CCASE) Sapling
    Study at the Hubbard Brook Experimental Forest: Growth and
    Litter

description: Litterfall production and stem growth of red maple and
      sugar maple saplings were assessed as measures of aboveground
      productivity in 2013 (to determine baseline values before
      treatment was initiated) and in 2014 after saplings
      experienced a combination of soil warming and winter
      freeze-thaw cycles treatments. There were seven treatments
      for each species of maple. For each species, ten saplings
      experienced ambient temperatures (reference), ten experienced
      growing season warming with no induced freeze-thaw cycles in
      winter (warmed), ten in each of four groups experienced
      warming in the growing season coupled with two, four, six, or
      eight soil freeze-thaw cycles in winter (warmed + 2 FTC,
      warmed + 4 FTC, warmed + 6 FTC, warmed + 8 FTC), and ten
      experienced snow removal in winter with ambient temperatures
      in the growing-season (snow removal).
      These data were gathered as part of the Hubbard Brook
      Ecosystem Study (HBES). The HBES is a collaborative effort at
      the Hubbard Brook Experimental Forest, which is operated and
      maintained by the USDA Forest Service, Northern Research
      Station.
DOI: 10.6073/pasta/59e57a077351ad0afd1c36620a20fbfe
title: Climate Change Across Seasons Experiment (CCASE) Sapling
    Study at the Hubbard Brook Experimental Forest: Soil and Air
    Temperature

description: Soil temperature was measured on all Climate Change
      Across Seasons Experiment (CCASE) sapling treatment plots.
      There were seven treatments for each species of maple. For
      each species, ten saplings experienced ambient temperatures
      (reference), ten experienced growing season warming with no
      induced freeze-thaw cycles in winter (warmed), ten in each of
      four groups experienced warming in the growing season coupled
      with two, four, six, or eight soil freeze-thaw cycles in
      winter (warmed + 2 FTC, warmed + 4 FTC, warmed + 6 FTC,
      warmed + 8 FTC), and ten experienced snow removal in winter
      with ambient temperatures in the growing-season (snow
      removal).
      These data were gathered as part of the Hubbard Brook
      Ecosystem Study (HBES). The HBES is a collaborative effort at
      the Hubbard Brook Experimental Forest, which is operated and
      maintained by the USDA Forest Service, Northern Research
      Station.
DOI: 10.6073/pasta/98d5a95df387e1e7827303f8ff3b287d
title: Climate Change Across Seasons Experiment (CCASE) Sapling
    Study at the Hubbard Brook Experimental Forest:
    Photosynthesis

description: Rates of leaf-level photosynthesis of red maple and
      sugar maple saplings experiencing combinations of soil
      warming and winter freeze-thaw cycles was measured biweekly
      on fully expanded, intact leaves from June through August
      2014 and June through September 2015 using a LI-6400. There
      were seven treatments for each species of maple. For each
      species, ten saplings experienced ambient temperatures
      (reference), ten experienced growing season warming with no
      induced freeze-thaw cycles in winter (warmed), ten in each of
      four groups experienced warming in the growing season coupled
      with two, four, six, or eight soil freeze-thaw cycles in
      winter (warmed + 2 FTC, warmed + 4 FTC, warmed + 6 FTC,
      warmed + 8 FTC), and ten experienced snow removal in winter
      with ambient temperatures in the growing-season (snow
      removal).
      These data were gathered as part of the Hubbard Brook
      Ecosystem Study (HBES). The HBES is a collaborative effort at
      the Hubbard Brook Experimental Forest, which is operated and
      maintained by the USDA Forest Service, Northern Research
      Station.
DOI: 10.6073/pasta/ff5ca1288325a4fa33ba86c46c9e139a
title: Climate Change Across Seasons Experiment (CCASE) Sapling
    Study at the Hubbard Brook Experimental Forest: Herbivory
    Damage and Snow Depth

description: During the winter 2014-15 there was extensive
      over-winter herbivory damage to sapling stems in the Climate
      Chaneg Across Seasons (CCASE) sapling experiment in the form
      of partial or complete girdling from bark consumption.
      Measurements of the extent of bark damage, the recovery class
      of the saplings, and the average snow depth during winter
      were made for each experimental treatment. There were seven
      treatments for each species of maple. For each species, ten
      saplings experienced ambient temperatures (reference), ten
      experienced growing season warming with no induced
      freeze-thaw cycles in winter (warmed), ten in each of four
      groups experienced warming in the growing season coupled with
      two, four, six, or eight soil freeze-thaw cycles in winter
      (warmed + 2 FTC, warmed + 4 FTC, warmed + 6 FTC, warmed + 8
      FTC), and ten experienced snow removal in winter with ambient
      temperatures in the growing-season (snow removal).
      These data were gathered as part of the Hubbard Brook
      Ecosystem Study (HBES). The HBES is a collaborative effort at
      the Hubbard Brook Experimental Forest, which is operated and
      maintained by the USDA Forest Service, Northern Research
      Station.
DOI: 10.6073/pasta/73f68509156bb5ebbe94eb25f57cdcd5
title: Climate Change Across Seasons Experiment (CCASE) Sapling
    Study at the Hubbard Brook Experimental Forest: Spring
    Phenology

description: Timing of spring leaf-out of red maple and sugar maple
      saplings experiencing combinations of soil warming and winter
      freeze-thaw cycles was assessed weekly in 2014 and 2015 from
      late April (when growing season warming began) through early
      June when leaves were fully expanded. There were seven
      treatments for each species of maple. For each species, ten
      saplings experienced ambient temperatures (reference), ten
      experienced growing season warming with no induced
      freeze-thaw cycles in winter (warmed), ten in each of four
      groups experienced warming in the growing season coupled with
      two, four, six, or eight soil freeze-thaw cycles in winter
      (warmed + 2 FTC, warmed + 4 FTC, warmed + 6 FTC, warmed + 8
      FTC), and ten experienced snow removal in winter with ambient
      temperatures in the growing-season (snow removal).
      These data were gathered as part of the Hubbard Brook
      Ecosystem Study (HBES). The HBES is a collaborative effort at
      the Hubbard Brook Experimental Forest, which is operated and
      maintained by the USDA Forest Service, Northern Research
      Station.
DOI: 10.18739/a21z41s5s
title: Soil, snow, and atmosphere exchanges of mercury in the interior Arctic tundra, Alaska
DOI: 10.6073/pasta/11c96821ddff12e054aeb6256cd5576c
title: Aboveground biomass data for Saddle grid plots, 1992 - 1995 and 1997.

description: During the summer of 1992 10-m transects were established at each of the Niwot Ridge Saddle grid points, with the exception of grid points 1, 13, 30A, 37, 41, 42, 63, and 71. No transects were set up at those locations because they were essentially barren of vegetation or, in the case of grid point 37, were covered with a willow shrub thicket. Transect locations were chosen so that the vegetation along the transect would be consistent with that in the 1x1-m plot used to characterize the species composition at the corresponding Saddle grid point. These transects were established as part of a study designed to quantify any relationship between spectral emissivity and net primary productivity. Spectral measurements were made, using a PS-II (Analytical Spectral Devices) spectrometer (metadata in saddsrad.cw.meta.txt), of approximately 50- x 20-cm plots along a transect immediately prior to it being clip harvested for aboveground biomass determinations. Photographs were taken at the same time that the spectral measurements were made in 1994, but at different times in 1993. The photographs were subsequently used to quantify various cover classes for the harvested portion of the transect (metadata in sadpcovr.cw.meta.txt).
DOI: 10.6073/pasta/e8075acef535d8e59be9c363c1408fa6
title: Long-term measurements of microbial biomass and activity
    at the Hubbard Brook Experimental Forest, climate gradient
    plots, 2010-2012

description: Long-term monitoring of soil nitrate (NO3-) and
      ammonium (NH4+) concentrations, microbial biomass carbon (C)
      and nitrogen (N) content, microbial respiration, potential
      nitrification and N mineralization rates, and denitrification
      potential has been ongoing at the Hubbard Brook Experimental
      Forest since 1994. Samples have been collected in the Bear
      Brook Watershed (west of Watershed 6) beginning in 1994. In
      1998, our sampling regime was extended to Watershed 1 in an
      effort to monitor and quantify microbial response to a
      whole-watershed calcium addition.
      These data were gathered as part of the Hubbard Brook
      Ecosystem Study (HBES). The HBES is a collaborative effort at
      the Hubbard Brook Experimental Forest, which is operated and
      maintained by the USDA Forest Service, Northern Research
      Station.
DOI: 10.6073/pasta/83751fda854b625c43a9dd232423a414
title: Photopriming litter decomposition

description: Dryland ecosystems cover nearly 45% of the Earth’s land area and account for large proportions of global annual productivity and carbon pools. However, predicting rates of plant litter decomposition in these vast ecosystems has proven challenging due to their distinctly dry and often hot climate regimes, and potentially unique physical drivers of decomposition. In this study, we elucidated the role of photopriming, i.e. potential for enhancement of microbial decay due to exposure of standing leaf litter to solar radiation prior to litterfall. We exposed litter substrates to three different UV radiation treatments simulating three-months of UV radiation exposure in southern New Mexico: no light, UVA+UVB+visible, and UVA+Visible. There were three litter types: mesquite leaflets (Prosopis glandulosa, litter with nitrogen (N) concentration), filter paper (pure cellulose), and basswood (Tilia spp, high lignin concentration). We deployed the photoprimed litter in the field within a large scale precipitation manipulation experiment: ~50% precipitation reduction, ~150% precipitation addition, and ambient control.
DOI: 10.6073/pasta/99c3fab95ea90b15e895fcf19916d1ba
title: Foliar Ca, Sr and 87Sr/86Sr measurements on Watershed 1
    at the Hubbard Brook Experimental Forest, 1999 -
    present

description: This dataset includes ICP-OES analyses of Ca and Sr
      concentration and thermal ionization mass spectrometry
      analyses of 87Sr/86Sr ratios for annual samples of Watershed
      1 understory foliage. Additional foliar elements were
      analysed and are included in the data table.
      These data were gathered as part of the Hubbard Brook
      Ecosystem Study (HBES). The HBES is a collaborative effort at
      the Hubbard Brook Experimental Forest, which is operated and
      maintained by the USDA Forest Service, Northern Research
      Station.