cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5683/sp3/2nup0m
title: Northern Tornadoes Project: Ontario Tornado Data (1875-2019, preliminary)

description: Preliminary Ontario tornado data (year, month, F/EF scale rating). First file contains all verified Ontario tornadoes from 1875 to 2019, as of 2 Feb 2022. Second file contains all verified tornadoes from 1875 to 2019 in southern Ontario rated F/EF2 or higher, as of 2 Feb 2022.
description: The full final version of the Ontario tornado database will be formally published when complete and made publicly available.
DOI: 10.5683/sp3/emibur
title: Adaptive divergence and the evolution of hybrid trait mismatch in threespine stickleback

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Selection against mismatched traits in hybrids is the phenotypic analogue of intrinsic hybrid incompatibilities. Mismatch occurs when hybrids resemble one parent population for some phenotypic traits and the other parent population for other traits, and is caused by dominance in opposing directions or from segregation of alleles in recombinant hybrids. In this study, we used threespine stickleback fish (&lt;i&gt;Gasterosteus aculeatus&lt;/i&gt; L.) to test the theoretical prediction that trait mismatch in hybrids should increase with the magnitude of phenotypic divergence between parent populations. We measured morphological traits in parents and hybrids in crosses between a marine population representing the ancestral form and twelve freshwater populations that have diverged from this ancestral state to varying degrees according to their environments. We found that trait mismatch was greater in more divergent crosses for both F&lt;sub&gt;1&lt;/sub&gt; and F&lt;sub&gt;2&lt;/sub&gt; hybrids. In the F&lt;sub&gt;1&lt;/sub&gt; the divergence--mismatch relationship was caused by traits having dominance in different directions, whereas it was caused by increasing segregating phenotypic variation in the F&lt;sub&gt;2&lt;/sub&gt;. Our results imply that extrinsic hybrid incompatibilities accumulate as phenotypic divergence proceeds.&lt;/p&gt;
description: &lt;b&gt;Methods&lt;/b&gt;&lt;br /&gt;&lt;p&gt;Full details are given in the open access paper.&lt;/p&gt;
description: &lt;b&gt;Usage notes&lt;/b&gt;&lt;br /&gt;&lt;p&gt;Full details are given in the readme.txt files.&lt;/p&gt;
description: <b>Dryad version number:</b> 3
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> https://datadryad.org/stash/share/cPVaOaJElqdWOUzUzsMPG5LCaqEpMLGkcmOBq_D5KUg
<b>Storage size:</b> 7830656
<b>Visibility:</b> public
DOI: 10.5683/sp3/uyka7z
title: Analysis of ancestry heterozygosity suggests that hybrid incompatibilities in threespine stickleback are environment-dependent

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Hybrid incompatibilities occur when interactions between opposite-ancestry alleles at different loci reduce the fitness of hybrids. Most work on incompatibilities has focused on those that are 'intrinsic', meaning they affect viability and sterility in the laboratory. Theory predicts that ecological selection can also underlie hybrid incompatibilities, but tests of this hypothesis using sequence data are scarce. In this article, we compiled genetic data for F&lt;sub&gt;2&lt;/sub&gt; hybrid crosses between divergent populations of threespine stickleback fish (&lt;em&gt;Gasterosteus aculeatus&lt;/em&gt; L.) that were born and raised in either the field (semi-natural experimental ponds) or the laboratory (aquaria). Because selection against incompatibilities results in elevated ancestry heterozygosity, we tested the prediction that ancestry heterozygosity will be higher in pond-raised fish compared to those raised in aquaria. We found that ancestry heterozygosity was elevated by approximately 3% in crosses raised in ponds compared to those raised in aquaria. Additional analyses support a phenotypic basis for incompatibility and suggest that environment-specific single-locus heterozygote advantage is not the cause of selection on ancestry heterozygosity. Our study provides evidence that, in stickleback, a coarse—albeit indirect—signal of environment-dependent hybrid incompatibility is reliably detectable and suggests that extrinsic incompatibilities can evolve before intrinsic incompatibilities.&lt;/p&gt;
description: &lt;b&gt;Methods&lt;/b&gt;&lt;br /&gt;&lt;p&gt;Full details are given in the open access article. All data are previously published (published here again), except for the benthic-limnetic microsatellite data.&lt;/p&gt;
description: &lt;b&gt;Usage notes&lt;/b&gt;&lt;br /&gt;&lt;p&gt;readme.txt files overview how best to use the data.&lt;/p&gt;
description: <b>Dryad version number:</b> 3
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> https://datadryad.org/stash/share/AzyhOo5bVhCpIe9ZPz-plXWIH3atL841GPNDX9pt1_8
<b>Storage size:</b> 40676699
<b>Visibility:</b> public
DOI: 10.5683/sp3/vaugy6
title: Data from: Genome-wide analysis reveals associations between climate and regional patterns of adaptive divergence and dispersal in American pikas

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Understanding the role of adaptation in species responses to climate change is important for evaluating the evolutionary potential of populations and informing conservation efforts. Population genomics provides a useful approach for identifying putative signatures of selection and the underlying environmental factors or biological processes that may be involved. Here, we employed a population genomic approach within a space-for-time study design to investigate the genetic basis of local adaptation and reconstruct patterns of movement across rapidly changing environments in a thermally-sensitive mammal, the American pika (&lt;i&gt;Ochotona princeps&lt;/i&gt;). Using genotypic data at 49,074 single nucleotide polymorphisms (SNPs), we analyzed patterns of genome-wide diversity, structure, and migration along three independent elevational transects located at the northern extent (Tweedsmuir South Provincial Park, British Columbia, Canada) and core (North Cascades National Park, Washington, USA) of the Cascades lineage. We identified 899 robust outlier SNPs within- and among-transects. Of those annotated to genes with known function, many were linked with cellular processes related to climate stress including ATP-binding, ATP citrate synthase activity, ATPase activity, hormone activity, metal ion-binding, and protein-binding. Moreover, we detected evidence for contrasting patterns of directional migration along transects across geographic regions that suggest an increased propensity for American pikas to disperse among lower elevation populations at higher latitudes where environments are generally cooler. Ultimately, our data indicate that fine-scale demographic patterns and adaptive processes may vary among populations of American pikas, providing an important context for evaluating biotic responses to climate change in this species and other alpine-adapted mammals.&lt;/p&gt;
description: &lt;b&gt;Usage notes&lt;/b&gt;&lt;br /&gt;&lt;p&gt;pika_97ind_14pop_49074snp.vcf: genotypic data for 97 individuals from 14 sample sites at 49,074 SNPs generated via RADseq.&lt;/p&gt;

&lt;p&gt;49074_populations.loci.fa: fasta file containing sequences for 49,074 loci.&lt;/p&gt;

&lt;p&gt;pika_108ind_14pop+supp_5000snp.vcf: genotypic data for 108 individuals from 14 sample sites and 7 supplemental sites at 5,000 random neutral SNPs generated via RADseq.&lt;/p&gt;
description: <b>Dryad version number:</b> 7
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> https://datadryad.org/stash/share/gCBRPLwxonr_sknFoZl6QZLLnBcQ_oQaGsNfmb1Oiu4
<b>Storage size:</b> 190272525
<b>Visibility:</b> public
DOI: 10.5683/sp3/zw2m5f
title: Data to accompany 'New evidence suggests no sex bias in herbivory or plant defence'

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p style="text-align:start;text-indent:0px;margin-bottom:11px;"&gt;&lt;span&gt;&lt;span style="font-style:normal;"&gt;&lt;span&gt;&lt;span style="font-weight:normal;"&gt;&lt;span style="letter-spacing:normal;"&gt;&lt;span&gt;&lt;span&gt;&lt;span style="white-space:normal;"&gt;&lt;span&gt;&lt;span&gt;&lt;span&gt;Dioecious plants can exhibit sexual dimorphism across a suite of plant traits, including susceptibility to herbivory and secondary chemistry. One hypothesis is that, due to greater costs of reproduction in females, males should grow faster and invest less in defense, resulting in male-biased herbivory. Indeed, a series of papers and a prominent meta-analysis have established male-biased herbivory as a robust result. However, more recent reviews have raised questions about how general the pattern is, citing the low breadth of taxon sampling. The literature on this topic has not been formally quantified by meta-analysis in over 15 years. Here we report the results of a meta-analysis of studies that measured sex bias in either herbivory and/or secondary defense in 71 dioecious plant species. We added 58 observations of herbivory and 41 of secondary chemistry to the original. We control for non-independence of effects from the same study and taxonomic group to address critiques of earlier studies. For secondary chemistry, we found no support for any consistent difference between male and female plants. For herbivory, results are directionally similar to earlier reports, although not statistically significant once we accounted for taxonomic group and study. We also found that the magnitude and direction of the effect of plant sex on herbivory declines, with earlier studies reporting a stronger male-bias. We discuss our results in light of the ‘decline effect’ and consider whether the datasets exhibit signs of evidence of the type(s) of biases that can result in declining effect sizes over time.&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
description: <b>Dryad version number:</b> 3
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> https://datadryad.org/stash/share/wKnC8_qx3mBIRRJfEM2AAqliRpW8MhiY_A763yI51qc
<b>Storage size:</b> 106958
<b>Visibility:</b> public
DOI: 10.5683/sp3/hysvit
title: Discussions of the not-so-fit: how ableism limits diverse thought and investigative potential in evolutionary biology

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Evolutionary biology and many of its foundational concepts are grounded in a history of ableism and eugenics. The field has not made a concerted effort to divest our concepts and investigative tools from this fraught history and as a result, an ableist investigative lens has persisted into present-day evolutionary research, limiting the scope of research and harming the ability to communicate and synthesize knowledge about evolutionary processes. This failure to divest from our eugenicist and ableist history has harmed progress in evolutionary biology and allowed principles from evolutionary biology to continue to be weaponized against marginalized communities in the modern-day. To rectify this problem, scholars in evolutionary research must come to terms with how the history of the field has influenced their investigations and work to establish a new framework for defining and investigating concepts, such as selection and fitness.&lt;/p&gt;
description: &lt;b&gt;Methods&lt;/b&gt;&lt;br /&gt;&lt;p&gt;These data were generated by performing an advanced search in the Web of Science database on 6/1/21. The advanced search criteria included documents of all types, restricted the publication years to 2010-2020, and limited results to only the Web of Science Categories "Ecology" and "Evolutionary Biology.” We searched for works published on the four main drivers of evolution using keywords including: "Genetic Drift," "Genetic Mutation," "Gene Flow," and the topic of selection broken down into two search terms, "Natural Selection" and "Sexual Selection."&lt;/p&gt;

&lt;p&gt;After performing the search, we used the Web of Science “Analyze Results” feature to obtain the number of records generated for each search term in each of the publication years of interest. These results were downloaded directly from Web of Science and added to the “AmNat Paper Figure 1 Data. csv” file and used to generate figure 1.&lt;/p&gt;
description: &lt;b&gt;Usage notes&lt;/b&gt;&lt;br /&gt;&lt;p&gt;In the data file:&lt;/p&gt;

&lt;p&gt;topic: The search term for each of the drivers of evolution explained above&lt;br&gt;
pub_year: The year of publication under consideration &lt;br&gt;
records: The number of results Web of Science reported as matching the search criteria for the given publication year&lt;/p&gt;

&lt;p&gt;These results were plotted in figure 1 using the R code in “Am Nat Figure 1 code. Rmd”&lt;/p&gt;
description: <b>Dryad version number:</b> 3
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> https://datadryad.org/stash/share/2vSWWZ2mg4H9_ItKP8xWgOhHOumtTvokT-L6QJ7PPkw
<b>Storage size:</b> 66712
<b>Visibility:</b> public
DOI: 10.5683/sp3/scom37
title: Faster evolution of a premating reproductive barrier is not associated with faster speciation rates in New World passerine birds

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Why are speciation rates so variable across the tree of life? One hypothesis is that this variation is explained by how rapidly reproductive barriers evolve. We tested this hypothesis by conducting a comparative study of the evolution of bird song, a premating barrier to reproduction. Speciation in birds is typically initiated when geographically isolated (allopatric) populations evolve reproductive barriers. We measured the strength of song as a premating barrier between closely related allopatric populations by conducting 2,339 field experiments to measure song discrimination for 175 taxon pairs of allopatric or parapatric New World passerine birds, and estimated recent speciation rates from a global molecular phylogeny of birds. Taxon pairs with high song discrimination in allopatry failed to regularly interbreed in parapatry, evidence that song discrimination is indeed an important reproductive barrier. However, evolutionary rates of song discrimination were not associated with recent speciation rates, and song discrimination evolves faster in suboscine passerines than their more species-rich sister clade, the oscines. Our findings support the long-held idea that song is a key premating reproductive barrier in birds, but show that faster evolution of this reproductive barrier between populations does not result in faster diversification betweeen species.&lt;/p&gt;
description: &lt;b&gt;Methods&lt;/b&gt;&lt;br /&gt;&lt;p&gt;This dataset was collected during fieldwork from 2015 - 2019 at multiple locations in North, Central and South America.&lt;/p&gt;
description: &lt;b&gt;Usage notes&lt;/b&gt;&lt;br /&gt;&lt;p&gt;Some columns, such as "notes", only have values for certain experiments and thus have many "NA" values.&lt;/p&gt;
description: <b>Dryad version number:</b> 3
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> https://datadryad.org/stash/share/O6e7RoVdFAEFCvxt4LwHXBd-BxS3ga-XbpYA8AkwBHc
<b>Storage size:</b> 5430442
<b>Visibility:</b> public
DOI: 10.5683/sp3/5bablo
title: Flight training and dietary antioxidants have mixed effects on the oxidative status of multiple tissues in a female migratory songbird

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Birds, like other vertebrates, rely on a robust antioxidant system to protect themselves against oxidative imbalance caused by energy-intensive activities such as flying. Such oxidative challenges may be especially acute for females during spring migration, since they must pay the oxidative costs of flight while preparing for reproduction; however, little previous work has examined how the antioxidant system of female spring migrants responds to dietary antioxidants and the oxidative challenges of regular flying. We fed two diets to female European starlings, one supplemented with a dietary antioxidant and one without, and then flew them daily in a windtunnel for two weeks during the fall and spring migration periods. We measured the activity of enzymatic antioxidants (GPx, SOD, CAT), non-enzymatic antioxidant capacity (ORAC), and markers of oxidative damage (protein carbonyls and lipid hydroperoxides) in four tissues: pectoralis, leg, liver, and heart. Dietary antioxidants affected enzymatic antioxidant activity and lipid damage in the heart, and non-enzymatic antioxidant capacity in the pectoralis and protein damage in leg muscle. In general, birds fed less antioxidants appear to incur increased oxidative damage while upregulating non-enzymatic and enzymatic antioxidant activity, though these effects were strongly tissue-specific. We also found a significant diet x training interaction for enzymatic antioxidant activity in the leg, and strong trends for diet x training interactions for enzymatic antioxidant activity in the heart and liver. Flight-training may condition the antioxidant system of females to dynamically respond to oxidative challenges, and females during spring migration may shift antioxidant allocation to reduce oxidative damage.&lt;/p&gt;
description: <b>Dryad version number:</b> 5
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> https://datadryad.org/stash/share/ehlLTnObj_6yQEPQTy-xbk7fb3EEUs8DsbYzCAjPow4
<b>Storage size:</b> 175506
<b>Visibility:</b> public
DOI: 10.5683/sp3/ygn3w4
title: Global camera trap synthesis highlights the importance of protected areas in maintaining mammal diversity

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;The establishment of protected areas (PAs) is a central strategy for global biodiversity conservation. While the role of PAs in protecting habitat has been highlighted, their effectiveness at protecting mammal communities remains unclear. We analyzed a global dataset from over 8,671 camera traps in 23 countries on four continents that detected 321 medium- to large-bodied mammal species. We found a strong positive correlation between mammal taxonomic diversity and the proportion of a surveyed area covered by PAs at a global scale (b = 0.39, 95% CI = 0.19, 0.60) and in Indomalaya (b = 0.69, 95% CI = 0.19,1.2), as well as between functional diversity and PA coverage in the Nearctic (b = 0.47, 95% CI = 0.09, 0.85), after controlling for human disturbances and environmental variation. Functional diversity was only weakly (and insignificantly) correlated with PA coverage at the global scale (b =0.22, 95% CI = -0.02, 0.46), pointing to a need to better understand the functional response of mammal communities to protection. Our study provides important evidence of the global effectiveness of PAs in conserving terrestrial mammals and emphasizes the critical role of area-based conservation in a post-2020 biodiversity framework.&lt;/p&gt;
description: <b>Dryad version number:</b> 14
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> https://datadryad.org/stash/share/ZmWzvCieAdVRKC87lwSVUMi6Nd0qvG84osEe64c3vT4
<b>Storage size:</b> 374418
<b>Visibility:</b> public
DOI: 10.5281/zenodo.17655538
title: ҚЎЛ СУЯКЛАРИ ФИБРОЗ ДИСПЛАЗИЯСИНИНГ МОРФОЛОГИК ХУСУСИЯТЛАРИ
DOI: 10.5683/sp3/vl6j53
title: Local plant richness predicts bee abundance and diversity in a study of urban residential yards

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Understanding the drivers of biodiversity in cities is a central goal of urban ecology. There is currently intense scientific and public interest in the factors that influence pollinator diversity in cities and their surroundings. Existing studies point to a variety of landscape and local factors as potentially important, including urbanization (often defined as impervious surface cover in the surrounding lands), tree canopy cover and the diversity and abundance of locally flowering plants. However, few studies have sought to weigh the relative importance of these predictors of bee community metrics. Using a set of 27 residential yards chosen to represent a gradient of both urbanization and tree canopy cover at a landscape scale, we used pan trapping and netting to assess the abundance and diversity of local bee communities across the City of Ottawa, Ontario, Canada. Surprisingly, the landscape factors (urbanization and tree cover) described only a tiny fraction (&lt; 1%) of the total variance in bee abundance and diversity across sites. This was true regardless of the scale of analysis at which the landscape factors were measured. Instead, a yard's floral richness, and, to a somewhat lesser extent, its floral abundance, emerged as the most important predictors of a yard's bee community abundance and diversity. Our study offers an important counterpoint to a growing body of work emphasizing the impacts of landscape factors on bee communities. Instead, our research suggests that improving bee floral resources by increasing the plant species richness and abundance locally is a powerful tool to support bee conservation, regardless of the level of urbanization or tree cover in the surrounding landscape. Our work highlights that the practice of promoting ‘bee-friendly’ plantings in private yards, currently being undertaken by a number of non-profits around the world, can play an important role in restoring and maintaining urban pollinator communities.&lt;/p&gt;
description: <b>Dryad version number:</b> 3
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> https://datadryad.org/stash/share/auhyosCF8roUlyxMxBsDK25_56Tc_I6LSx5TeIS2Ies
<b>Storage size:</b> 52465
<b>Visibility:</b> public
DOI: 10.5281/zenodo.17655537
title: ҚЎЛ СУЯКЛАРИ ФИБРОЗ ДИСПЛАЗИЯСИНИНГ МОРФОЛОГИК ХУСУСИЯТЛАРИ