cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/s6x-ky9-mb9
title: Pseudochirella notacantha (Sars G.O., 1905)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eb8-jts-1d3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/spe-a6d-ffp
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/gp215vr4425
title: Sub-communities of the vaginal ecosystem in pregnant and non-pregnant women

description: Diverse and non-Lactobacillus-dominated vaginal microbial communities are associated with adverse health outcomes such as preterm birth and the acquisition of sexually transmitted infections. Despite the importance of recognizing and understanding the key risk-associated features of these communities, their heterogeneous structure and properties remain ill-defined. Clustering approaches are commonly used to characterize vaginal communities, but they lack sensitivity and robustness in resolving substructures and revealing transitions between potential sub-communities. Here, we address this need with an approach based on mixed membership topic models, using longitudinal data from cohorts of pregnant and non-pregnant study participants. We identify several non-Lactobacillus-dominated sub-communities common to both cohorts and independent of reproductive status. In non-pregnant individuals, we find that the menstrual cycle modulates transitions between and within sub-communities. In addition, a specific non-Lactobacillus-dominated sub-community, which was associated with preterm delivery in pregnant participants, was also more common during menses, a time of elevated vaginal inflammation in non-pregnant participants. Overall, our analyses based on mixed membership models reveal substructures of vaginal ecosystems which may have important clinical and biological associations.
DOI: 10.3535/j7c-0a5-q22
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0pr-66r-79v
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tby-k3m-ck5
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j0k-e99-v4h
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/hs043jz7077
title: Crustal block-controlled contrasts in deformation, uplift, and exhumation in the Santa Cruz Mountains, California, USA, imaged through apatite (U-Th)/He thermochronology and 3-D geological modeling - Supporting scripts, data files, and visualization products

description: Deformation along strike-slip plate margins often accumulates within structurally partitioned and rheologically heterogeneous crustal blocks within the plate boundary. In these cases, contrasts in the physical properties and state of juxtaposed crustal blocks may play an important role in accommodation of deformation. Near the San Francisco Bay Area, California, USA, the Pacific−North American plate-bounding San Andreas fault bisects the Santa Cruz Mountains (SCM), which host numerous distinct, fault-bounded lithotectonic blocks that surround the San Andreas fault zone. In the SCM, a restraining bend in the San Andreas fault (the SCM bend) caused recent uplift of the mountain range since ca. 4 Ma. To understand how rheologic heterogeneity within a complex fault zone might influence deformation, we quantified plausible bounds on deformation and uplift across two adjacent SCM lithotectonic blocks on the Pacific Plate whose stratigraphic and tectonic histories differ. This was accomplished by combining 31 new apatite (U-Th)/He ages with existing thermochronological datasets to constrain exhumation of these two blocks. Additionally, surface exposures of the latest Miocene to late Pliocene Purisima Formation interpreted in 18 structural cross sections spanning the SCM allowed construction and restoration of Pliocene deformation in a three-dimensional geologic model. We found that rock uplift and deformation concentrated within individual Pacific Plate lithotectonic blocks in the SCM. Since 4 Ma, maximum principal strain computed for the more deformed block adjacent to the fault exceeded that computed for the less deformed block by at least 375%, and cumulative uplift has been more spatially extensive and higher in magnitude. We attribute the difference in uplift and deformation between the two blocks primarily to contrasts in lithotectonic structure, which resulted from diverging geologic histories along the evolving plate boundary.

This repository contains supporting scripts, data files, and visualization products associated with this work.
DOI: 10.3535/08l-2rz-nmt
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6n0-w2q-8m5
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/yh091zv1831
title: Data for research paper titled "Field-tuned ferroquadrupolar quantum phase transition in the insulator TmVO4"

description: Heat capacity, magnetocaloric effect and neutron diffraction data of TmVO4, an insulator that undergoes a continuous ferroquadrupolar quantum phase transition
DOI: 10.3535/8a8-z68-8rz
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r94-hzz-v82
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/nj176bd5255
title: Dynamic Imaging of Mixed Imbibition Process in a Naturally Fractured Shale Rock using X-ray CT

description: The datasets associated with the publication entitled ‘Mixed Imbibition Controls The Advance of Wetting Fluid in Multiscale Geological Media’ is attached. This includes both static and dynamic imaging datasets acquired on a naturally fractured Wolcamp sample using micro- and clinical-CT instruments. In particular, dry scans were obtained using micro-CT, whereas clinical-CT scans were acquired to characterize spatial porosity distributions as well as fracture-matrix interactions during brine imbibition.  The voxel dimensions of the 3D tomograms are (27×27×27) μm3 and (195×195×625) μm3 for micro- and clinical-CT, respectively. An additional 'Readme.txt' file is provided that contains detailed description of the each dataset including the key parameters set for the CT instruments.
DOI: 10.3535/csb-11m-gg6
title: Onchocalanus affinis With, 1915

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/kp522jx6373
title: 16S rRNA sequencing data and metadata for "Deconstructing the role of iron and heme in the structure of healthy human gut microbial communities"

description: The response of the human gut microbiome to disruptions is often difficult to discern without model systems that remove the complexity of the host environment. Fluctuations in iron availability provide a case in point: the responses of pathogenic bacteria to iron in vitro are much better understood than those of the indigenous human gut commensal microbiota. In a non-clinical study of iron supplementation in healthy humans, we identified gradual, participant-specific microbiota shifts correlated with bacterial iron internalization. To identify direct effects due to taxon-specific iron sensitivity, we used stool samples from these participants as inocula to derive in vitro communities. Iron supplementation of these communities caused small shifts in structure, similar to in vivo, whereas iron deprivation dramatically inhibited growth with irreversible and cumulative reduction in diversity and replacement of some dominant species. Sensitivity of individual species to iron deprivation during growth in axenic culture generally predicted iron dependency in a community context. Finally, exogenous heme acted as a source of inorganic iron to prevent depletion of some community members. Our results highlight the complementarity of in vivo and in vitro studies in deconstructing how environmental factors affect gut microbiome structure.
DOI: 10.3535/6jb-3hk-11b
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xmn-h7f-h44
title: Aetideus giesbrechti Cleve, 1904

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1qj-crp-l29
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a22-48j-eqb
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6tr-13d-l4p
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e3w-pet-007
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pve-47q-29k
title: Amallothrix dentipes (Vervoort, 1951)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wqz-4cp-7wl
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.15829481
title: Customized Design of Dynamically Full Polarization-Controlled Color Modulation Platforms data
DOI: 10.5281/zenodo.15829482
title: Customized Design of Dynamically Full Polarization-Controlled Color Modulation Platforms data
DOI: 10.3535/552-s47-ahz
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/63g-gvm-kcq
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h47-y88-83c
title: Onchocalanus affinis With, 1915

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/emj-3xb-22m
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/zw381vv4625
title: Data and code associated with Lacroix et al. 2022. Mineral protection and resource limitations combine to explain profile-scale soil carbon persistence

description: Data and code associated with Lacroix, et al. 2022. Mineral protection and resource limitations combine to explain profile-scale soil carbon persistence. Journal of Geophysical Research: Biogeosciences.
DOI: 10.3535/ls0-hv9-156
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n7n-qfz-60t
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/td688wq5586
title: On Internal Tides Driving Residual Currents and Upwelling on an Island

description: Tides oscillate the world’s oceans, and because warmer lighter water sits on cooler dense water, wave energy travels along this interface. This process, called internal tides, creates waves which propagate in the ocean interior and are quite common in the ocean. When these waves encounter a coastline or island they function similarly to waves on a beach: they can turn, change shape, break, or reflect. These changes to the waves can create currents, often quite strong, and pull deeper cooler water into the shallow coastal areas. We performed a modeling study to determine which factors are most important in creating strong currents from these internal tides across a range of possible conditions on islands worldwide. The results show that the internal tides create complex currents and bring cooler dense water into the shallow regions under most conditions. The factor that creates potentially the best conditions for organisms living on the ocean floor is gradual ocean floor slopes (compared to steeper). The results for this condition had strong currents, increased deep ocean waters, and cooler temperatures in the shallow coastal areas which may buffer effects from future ocean warming.
DOI: 10.3535/6g2-6nb-188
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/hp267yt1382
title: Supplementary data on Eterna-designed superfolder ribosomes

description: Functional design of ribosomes with mutant ribosomal RNA (rRNA) could expand opportunities for understanding molecular translation, building cells from the bottom-up, and engineering ribosomes with altered capabilities. However, such efforts have been hampered by cell viability constraints, an enormous combinatorial design space, and limitations on large-scale, 3D design of RNA structures and functions. To address these challenges, we developed an integrated community science and experimental screening approach for rational design of ribosomes. This approach couples Eterna, an online video game that crowdsources RNA sequence design to community scientists in multiple design-build-test-learn cycles. We applied our framework to discover mutant rRNA sequences that improve protein synthesis in vitro and cell growth in vivo, relative to wild type ribosomes, under diverse environmental conditions. This work provides new insights into ribosome rRNA sequence-function relationships and has implications for synthetic biology.
DOI: 10.25740/kc822vj3040
title: Arctic Ocean Chlorophyll a based on AOReg.emp algorithm (R2018)

description: Arctic Ocean Chlorophyll a from SeaWiFS and MODIS/Aqua satellite data (R2018) using regional AOReg.emp algorithm.  Each netCDF files contains 46 images comprising 8-day composites for a specific year.  See the README file for more information.
DOI: 10.3535/9r8-n3t-jrf
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qdj-g4y-pkq
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x51-pd9-l8t
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e2j-cw6-h28
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qvt-xem-vkt
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/clf-st9-t78
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wze-bhs-64s
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p0x-a5t-9em
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pn4-3bx-vtm
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y5b-3a4-d8k
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/97y-j8t-c96
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p9l-x1t-b7c
title: Metridia gerlachei Giesbrecht, 1902

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.qmk5yh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Digitaria violascens Link",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102748-250525065834625/datasets/export for details.
DOI: 10.3535/d6n-kse-kvh
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g9h-vkq-fsz
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ljg-2r9-km2
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x02-h6y-abd
title: Tethysbaena coqui Wagner, 1994

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6ja-rsz-kvf
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yj0-ntg-44l
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rfb-3s0-285
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9hj-5br-x64
title: Metridia gerlachei Giesbrecht, 1902

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k7w-02j-ww3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.da48m3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Digitaria violascens Link",
 "Country is Nauru",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102750-250525065834625/datasets/export for details.
DOI: 10.3535/mg5-xrw-gkf
title: Daphnia (Daphnia) pulex Leydig, 1860

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y3h-lxt-ch1
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.60905/kgyyts
title: T1_E20 Katherine: Itinerario emocional de una digna rabia

description: &lt;p&gt; El fen��meno social, pol��tico y cultural que viene tomando lugar en las calles de Colombia desde el 28 de abril de este a��o (2021) y que se ha convertido en una movilizaci��n ciudadana sin precedentes en este pa��s, ha sido catalogado desde sus inicios como un 'estallido social', concepto con el que se ha intentado caracterizar el torrente de emociones y sentimientos de indignaci��n, rabia, desesperaci��n y hast��o acumulados largamente en el inconsciente colectivo y que desde hace ya casi cuatro meses vienen expresando y tramitando en el espacio urbano el heterog��neo conjunto de ciudadanos que ha formado parte de este movimiento. En esta entrada del archivo compartiremos el relato de Katherine, habitante de la localidad de Engativ�� en Bogot��, cuyo itinerario emocional a trav��s del Paro no solo recoge varios de los sentimientos ligados al mencionado estallido, sino que traza un recorrido por la memoria de movilizaciones sociales ocurridas en a��os recientes en Colombia, que nos llevan a recordar las muertes de D��lan Cruz y Javier Ordo��ez a manos de la polic��a en el a��o 2019 y 2020 respectivamente, las cuales se han convertido en s��mbolos de la protesta ciudadana y de un rechazo rotundo frente al abuso y violencia policial.&lt;/p&gt;
description: Las localidades mas activas son Portal Resistencia, Usme y Suba, porque esas son las periferias, son los barrios olvidados. <br> Desescalamiento del Paro Nacional #28A. 7 de agosto a 28 de diciembre de 2021
DOI: 10.3535/10v-y6w-vsj
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n7z-bxy-0lz
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5as-20w-9vg
title: Paraeuchaeta biloba Farran, 1929

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8py-r5p-5ch
title: Scaphocalanus brevicornis (Sars G.O., 1900)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.rmdqdv
title: Occurrence Download

description: A dataset containing 7852642 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "PublishingOrg is 2cd829bb-b713-433d-99cf-64bef11e5b3e"
 ]
}

 The dataset includes 7852642 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102733-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/bgn-1hx-3rp
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rbh-h19-vll
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yez-kyx-3tt
title: Aetideus bradyi Scott A., 1909

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5ac-rv6-pv6
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rgx-v72-e5w
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7r4-6tw-jtq
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3yk-hmm-x4r
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kac-kth-49e
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k4m-8hv-ay4
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.rfqzmv
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Digitaria violascens Link",
 "Country is Fiji",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102749-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/8m8-btt-0jz
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q0w-y0d-fqy
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0al-ckx-163
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xkr-jjq-h7q
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e9v-19h-9rs
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kmd-3x7-1j5
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/349-49g-p4f
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sxf-trn-wsq
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zh1-cpj-bm6
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jnj-n8s-39k
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l7d-c1c-nzp
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s98-25j-49f
title: Decapoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.