cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18352684
title: RAHBARLARDA BOSHQARUV KOMPONENTLARINING SHAKLLANISHI

description: Mazkur ilmiy maqolada rahbar shaxsida boshqaruv komponentlarining shakllanish jarayoni kompleks va tizimli yondashuv asosida tadqiq etiladi. Tadqiqot doirasida rahbarlik faoliyatining samaradorligini belgilovchi asosiy boshqaruv komponentlari — strategik fikrlash, tashkiliy-boshqaruv ko‘nikmalari, shaxslararo muloqot madaniyati, psixologik barqarorlik, liderlik fazilatlari hamda raqamli kompetensiyalarning mazmuni va ularning o‘zaro uzviy bog‘liqligi ilmiy-nazariy jihatdan tahlil qilinadi. Maqolada rahbarlarda boshqaruv komponentlarining shakllanishiga ta’sir etuvchi omillar, jumladan, ta’lim va malaka oshirish tizimi, amaliy boshqaruv tajribasi, mentoring va coaching mexanizmlari, shuningdek, zamonaviy ijtimoiy-iqtisodiy sharoitlar ta’siri keng yoritilgan. Boshqaruv komponentlarining rivojlanishi rahbarning qaror qabul qilish samaradorligi, jamoani motivatsiyalash qobiliyati va tashkilot faoliyatining barqarorligini ta’minlashdagi o‘rni asoslab berilgan.
DOI: 10.5281/zenodo.18352685
title: RAHBARLARDA BOSHQARUV KOMPONENTLARINING SHAKLLANISHI

description: Mazkur ilmiy maqolada rahbar shaxsida boshqaruv komponentlarining shakllanish jarayoni kompleks va tizimli yondashuv asosida tadqiq etiladi. Tadqiqot doirasida rahbarlik faoliyatining samaradorligini belgilovchi asosiy boshqaruv komponentlari — strategik fikrlash, tashkiliy-boshqaruv ko‘nikmalari, shaxslararo muloqot madaniyati, psixologik barqarorlik, liderlik fazilatlari hamda raqamli kompetensiyalarning mazmuni va ularning o‘zaro uzviy bog‘liqligi ilmiy-nazariy jihatdan tahlil qilinadi. Maqolada rahbarlarda boshqaruv komponentlarining shakllanishiga ta’sir etuvchi omillar, jumladan, ta’lim va malaka oshirish tizimi, amaliy boshqaruv tajribasi, mentoring va coaching mexanizmlari, shuningdek, zamonaviy ijtimoiy-iqtisodiy sharoitlar ta’siri keng yoritilgan. Boshqaruv komponentlarining rivojlanishi rahbarning qaror qabul qilish samaradorligi, jamoani motivatsiyalash qobiliyati va tashkilot faoliyatining barqarorligini ta’minlashdagi o‘rni asoslab berilgan.
DOI: 10.15468/dl.bxhhpe
title: Occurrence Download

description: A dataset containing 4026 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lepidonotothen squamifrons",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 10",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 4026 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007620-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.prr4xgxj9
title: Data from: Riparian habitat restoration increases the availability and occupancy of Yellow-breasted Chat territories but brood parasitism is the primary influence on reproductive performance

description: Implementation and evaluation of conservation efforts requires an
 understanding of the habitat selection and reproductive success of
 endangered populations. As populations recover, established territory
 holders may force new arrivals into lower-quality habitat, which can
 reduce reproductive success, especially in disturbed landscapes where
 suitable habitat is scarce. The endangered Western Yellow-breasted Chat
 (Icteria virens auricollis) population in the fragmented riparian zone of
 the Okanagan Valley, British Columbia, Canada, has rapidly increased in
 response to habitat restoration. During this population increase from
 2002–2014, we monitored 485 chat nests in 157 breeding territories to
 evaluate the influences of habitat selection, habitat restoration, and
 brood parasitism by Brown-headed Cowbirds (Molothus ater) on reproductive
 performance. We found that, in protected reference sites, breeding
 territories that were occupied in the early years of the study had higher
 percent shrub cover than territories that were first occupied in the later
 years of the study, indicating that chats preferred territories with high
 shrub cover. Conversely, in restoration sites, later-occupied territories
 had similarly high shrub cover as earlier-occupied territories, suggesting
 that restoration activities enabled chats to continually settle in
 territories with high shrub cover. Yet, we did not find strong evidence
 that nest site vegetation characteristics or habitat restoration
 influenced reproductive performance. Instead, the high rate of brood
 parasitism (49%), which reduced nest success and productivity, was the
 dominant influence on reproductive performance. However, this recovering
 population still had high daily nest survival (0.974) and productivity
 (2.72 fledglings per successful nest) compared to other riparian songbirds
 and the high parasitism rate did not prevent the population from
 increasing. Thus, conservation efforts for Yellow-breasted Chats should
 focus on restoring riparian shrubs, even within heavily developed
 landscapes, to increase the number of potential breeding territories,
 while also quantifying how brood parasitism influences reproductive
 performance.
description: Methods and analyses are described in the manuscript.
description: Refer to the "Data explanation" file.
DOI: 10.5061/dryad.zgmsbcc7z
title: Data from: Lightning damage facilitates beetle colonization of tropical trees

description: Lightning is a common agent of disturbance in many forest ecosystems.
 Lightning-damaged trees are a potentially important resource for beetles,
 but most evidence for this association is limited to temperate pine
 forests. Here, we evaluate the relationship between lightning damage and
 beetle colonization of tropical trees. We recorded the number of beetle
 holes on the trunks of trees from 10 strike sites (N = 173
 lightning-damaged trees) and 10 matching control sites (N = 137 control
 trees) in Panama. The trunks of lightning-struck trees had 370% more
 beetle holes than control trees. The abundance of beetle holes increased
 with increasing total crown dieback among both control and
 lightning-damaged trees, and with larger tree diameter among
 lightning-struck trees. Beetle holes also were more abundant in trunk
 sections of lightning-damaged trees located directly below a damaged
 section of the crown. The results of this study suggest that lightning
 damage facilitates beetle colonization in tropical forest trees and
 provide a basis for investigations of the effects of lightning-caused
 disturbance on beetle population dynamics and assemblage structure.
DOI: 10.5061/dryad.612jm6418
title: Data from: The effect of heat treatments on the phase composition and diffraction patterns of goethite to α-Fe2O3/γ-Fe2O3 transformation

description: Recovered iron hydroxides from Electro-coagulated (EC) sludge collected
 from the textile wastewater treatment plant and heat treated forms of iron
 oxides on phase composition properties and phase identification were
 reported. EC sludges containing iron hydroxides were examined with heat
 treatment at a temperature of 100, 300, 500 and 800 0C.  The raw
 and analyzed data of the x-ray diffraction examinations of the raw iron
 hydroxides containing EC sludge and transformed iron oxides were reported.
 X- ray Diffraction (XRD) analytical techniques were used for both raw EC
 sludge and transformed iron oxides, hematite,  characteristic
 determination. Iron oxide (Hematite)  diffraction pattern as
 comparative to International Central Diffraction Data (ICDD) from heat
 treated at high temperature EC sludge were evaluated and
 confirmed.  Raw and analyzed data of XRD analysis for both
 recovered iron hydroxides and transformed iron oxides is uploded in
 the  data repository as PDF and XPS viewer.
description: X-ray
 Diffraction (XRD) analysis were acquired both for raw sludge and heat
 treated with a temperature range of 100-800 <sup>0</sup>C
 using X-ray difractometer (SHIMADZU, MAXima_X
 XRD-7000<b>)</b>. Basic data processing together
 with their longest peak intensity and Powder diffraction file were
 recorded directly from XRD machine. Thermal
 treatment temperature is critical in the oxidative transformation of iron
 hydroxides/Fe<sub>3</sub>O<sub>4</sub> to hematite
 iron oxides to confirm by characterizations of its phase composition
 Thus,
 four heat treatment: Effect of temperatures (100, 300, 500 and 800
 <sup>0</sup>C) to transform iron hydroxides to hematite iron
 oxides for their diffraction pattern were studied.
 Strategic analytical
 technique of XRD was used to study the effect of thermal treatment and raw
 EC sludge for their phase composition. 
 Mechanically and thermally treated samples were subjected for XRD
 analysis. Powder diffraction file (PDF) data for all samples were
 generated from the analytical instruments, XRD machine together with the
 international centre for diffraction data (ICDD) reference minerals. Also,
 basic processing (BP) of
 the  most intense peaks information in terms of angular position (2Theta),
 Interplanar spacing (d), Intensity (I) and Peak Width (FWHM) are saved as
 XPS viewer.
DOI: 10.5061/dryad.xwdbrv1bb
title: Data from: Acute necrotizing encephalopathy with SARS-CoV-2 RNA confirmed in Cerebrospinal fluid

description: Here we report a case of Covid-19-related acute necrotizing encephalopathy
 (ANE) where SARS-CoV-2 RNA was found in cerebrospinal spinal fluid (CSF)
 first 19 days after symptom onset after negative findings earlier. Even
 though monocytes and protein levels in CSF were only marginally increased,
 and our patient never experienced a hyperinflammatory state, she
 deteriorated in neurological function and became comatose. Magnetic
 resonance imaging of the brain showed pathological signal symmetrically in
 central thalami, subinsular regions, medial temporal lobes and brain stem.
 Extremely high concentrations of the neuronal injury markers neurofilament
 light (NfL) and tau, as well as an astrocytic activation marker glial
 fibrillary acidic protein (GFAp), were measured in CSF in parallel to
 in-depth proteomics analysis. The patient received intravenous
 immunoglobulins (IVIG) and plasma exchange (PLEX). Her neurological status
 improved and she was extubated four weeks after symptom onset. This case
 report highlights the neurotropism of SARS-CoV-2 in selected patients and
 emphasizes the importance of repeated lumbar punctures and CSF analyses in
 patients with suspected Covid-19 and neurological symptoms.
DOI: 10.5061/dryad.s4mw6m94g
title: An integrated genomic approach identifies HOXC8 as an upstream regulator in ovarian endometrioma

description: Purpose: To identify the upstream regulators (URs) involved in the onset
 and pathogenesis of ovarian endometrioma. Methods: Recently, a method
 called SMITE that uses transcriptome data in combination with publicly
 available data for identifying URs of cellular processes has been
 developed.  Here, we used SMITE with transcriptome data from
 ovarian endometrioma stromal cells (ovESCs) and eutopic endometrium
 stromal cells (euESCs) in combination with publicly available gene
 regulatory network data.  To confirm the URs identified by SMITE,
 we developed a Boolean network simulation to see if correcting aberrant
 expressions of the identified genes could restore the entire gene
 expression profile of ovESCs to a profile similar to that of
 euESCs.  We then established euESCs overexpressing the identified
 gene and characterized them by cell function assays and transcriptome
 analysis. Results: SMITE identified 12 potential URs in ovarian
 endometrioma that were confirmed by the Boolean simulation.  One
 of the URs, HOXC8, was confirmed to be overexpressed in ovESCs. 
 HOXC8 overexpression significantly enhanced cell proliferation, migration,
 adhesion, and fibrotic activities, and altered expression statuses of the
 genes involved in TGF-ß signaling.  HOXC8 overexpression also
 increased the expression levels of phosphorylated SMAD2/SMAD3. 
 The increased adhesion and fibrosis activities by HOXC8 were significantly
 inhibited by E-616452, a selective inhibitor of TGF-ß receptor type I
 kinases.   Main Conclusions: Integrated genomic approaches
 identified HOXC8 as an UR in ovarian endometrioma.  The
 pathological features of ovarian endometrioma including cell
 proliferation, adhesion, and fibrosis were induced by HOXC8 and its
 subsequent activation of TGF-ß signaling.
DOI: 10.13140/rg.2.2.35997.58082
title: 2327-5073-ClinicalMicrobiology-2014 Accepted.pdfCorrelation between phage typing and toxins content as an outbreaks tool in Staphylococcus aureus
DOI: 10.5061/dryad.mgqnk98wv
title: Rhododendron smokianum Ralf Bauer & Albach, a new species from the Great Smoky Mountains

description: Species delimitation in Rhododendron subsect. Caroliniana (Ericaceae) has
 been disputed in the past with one or three species accepted. Here we
 report a fourth species, Rh. smokianum, a narrow endemic from the Great
 Smoky Mountains (Tennessee/North Carolina, USA). It is characterized by
 short-tubed corollas and small, compact growth. We support our conclusion
 by phylogenetic analyses of ITS and plastid trnL-F sequence data. The new
 species is a specialist of open mafic rock slopes and maintains
 morphological and phenological differences to the related species even in
 cultivation.
description: The nuclear ribosomal ITS-region (hereafter ITS) and the plastid
 <i>trn</i>L intron, <i>trn</i>L 3´ exon and
 <i>trn</i>L-F spacer (hereafter <i>trn</i>L-F
 region) were amplified using primers ITS A (Blattner 1999) and ITS4 (White
 et al. 1990) for ITS, and the <i>trn</i>L-F region with
 primers c and f and sometimes including internal primers d and e (Taberlet
 et al. 1991). Sequences were generated by Sanger sequencing at
 commercial sequencing companies. Sequences were manually
 aligned in Phyde v.0.9971 (Müller et al. 2010).
DOI: 10.5061/dryad.rxwdbrv5j
title: Comparative RepeatExplorer analysis of Sorghum purpureosericeum B chromosome positive/negative plant

description: B chromosomes are supernumerary, dispensable chromosomes, the presence of
 which has been detected in all major groups of living organisms - animals,
 plants and fungi. They do not pair with A chromosomes during meiosis and
 have irregular modes of inheritance. Here, we isolated and sequenced DNA
 from B positive and B negative nuclei of Sorghum purpureosericeum and
 performed repeat analysis on Illumina raw sequence data. The sequence
 reads were analysed using RepeatExplorer pipeline in a comparative
 fashion. The analysis revealed nine putative B specific clusters, which
 were further characterized and used in order to develop B chromosome
 specific markers. This dataset provides access to reads used in the
 analysis; assembled repetitive clusters; and result of comparative
 analysis between B positive and B negative samples.
description: DNA was
 collected from <em>Sorghum purpureosericeum</em> plants with
 and without supernumerary B chromosomes. Libraries for sequencing were
 prepared using NEBNext Ultra II DNA Library Prep Kit for Illumina.
 Sequence clustering and comparative analysis was performed with aim to
 identify B chromosome specific repetitive sequences. Illumina sequence
 reads were analyzed using RepeatExplorer pipeline (Novak et al. 2013,
 Bioinformatics; Novak et al. 2017, Nucleic Acids Research). 600,000
 pair-end reads per sample used in the analysis are available in
 files <strong><em>Spu_reads_B_negative.fasta</em></strong> and <strong><em>Spu_reads_B_positive.fasta</em></strong>. Sequences of clusters resulting from the analysis are available in file <strong><em>SpuCL_contigs.fasta</em></strong>. Comparative analysis is presented in file <strong><em>SpuCL_comparative_analysis.xlsx</em></strong>. Numbers of reads originating in B positive and B negative sample are presented for each cluster. .
DOI: 10.5061/dryad.0p2ngf1xf
title: Data from: The effect of root-associated microbes on plant growth and chemical defence traits across two contrasted elevations,

description: 1. Ecotypic differences in plant growth and anti-herbivore defence
 phenotypes are determined by the complex interactions between the abiotic
 and the biotic environment. 2. Root-associated microbes (RAMs) are
 pervasive in nature, vary over climatic gradients, and have been shown to
 influence the expression of multiple plant functional traits related to
 biomass accumulation and biotic interactions. We addressed how variation
 in climatic conditions between lowland and sub-alpine habitats in the Alps
 and RAMs can independently or interactively affect plant growth and
 anti-herbivore defence trait expression. 3. To address the contribution of
 climate and RAMs on growth and chemical defences of high- and
 low-elevation Plantago major ecotypes, we performed a full-factorial
 reciprocal transplant field experiment at two elevations. We coupled it
 with plant functional trait measurements and metabolomics analyses. 4. We
 found that local growing climatic conditions mostly influenced how the
 ecotypes grew, but we also found that the high- and low-elevation ecotypes
 improved biomass accumulation if in the presence of their own-elevation
 RAMs. Second, we found that while chemical defence expression was affected
 by climate, they were also more highly expressed when plants were
 inoculated with low elevation RAMs. 5. Synthesis – Our research
 demonstrated that RAMs from contrasted elevations impact how plants grow
 or synthesize toxic secondary metabolites. At low elevation, where biotic
 interactions are stronger, RAMs enhance plant biomass accumulation and the
 production of toxic secondary metabolites.
DOI: 10.5061/dryad.jq2bvq86q
title: Data from: Oecanthus nigricornis (Orthoptera: Gryllidae) as the first known host of Stylogaster neglecta (Diptera: Conopidae)

description: The conopid fly Stylogaster neglecta Williston (Diptera: Conopidae) is a
 parasitoid with no known host. We report this species as the first
 recorded dipteran parasitoid of Oecanthus nigricornis Walker (Orthoptera:
 Gryllidae) (black-horned tree crickets). We reared field-collected O.
 nigricornis juveniles over several months in 2017 and found that larval S.
 neglecta emerged from them during late July into August. We estimated the
 incubation period for S. neglecta larvae to be around 30 days based on the
 length of time it took for them to emerge from the host and pupate
 (subsequently all hosts died). We documented several cases of multiple
 parasitism. In 2018, we dissected O. nigricornis sampled from four sites
 across southern Ontario, Canada and upstate New York, United States of
 America and found that the percentage of juvenile O. nigricornis
 parasitised ranged 2–39%. Further sampling will be necessary to determine
 whether this variation represents consistent population differences or
 between-year variation in parasitism.
description: In 2017, we sampled <em>O. nigricornis</em> nymphs
 approximately every two weeks from 28 June until 13 September from old
 fields at the University of Toronto, Mississauga Campus (43.55°N, 79.66°W)
 (total = 131 <em>O. nigricornis</em>). The start date was
 chosen as the first day in which we were successfully able to
 sample <em>O. nigricornis</em> from the site. The end date was
 chosen as the first sample in which we no longer found any <em>S.
 neglecta</em> larva emerging from the sampled <em>O.
 nigricornis</em>. We also collected 21 <em>O.
 nigricornis </em>eggs in May of 2017 by cutting short segments
 rasberry stems containing eggs and then placing them in petri dishes lined
 with filter paper. The filter paper was sprayed with water daily and kept
 at 25 °C and 70% humidity. Nymphs that hatched were removed and reared
 individually. All crickets collected were given a letter code based on the
 day they were collected (A-H). We reared caught and hatched <em>O.
 nigricornis</em> individually in open-ended plastic cylinders, 8 cm
 in diameter and 7.5 cm long, with metal mesh covering the top end, at 25
 °C and 70% humidity. <em>Oecanthus nigricornis</em> were fed
 pollen and dry dog food, and containers were sprayed with water every
 second day. We recorded the date on which <em>O.
 nigricornis</em> were caught, when they died, cause of death, and
 whether a parasitoid emerged. <em>Stylogaster
 neglecta</em> pupae found in the containers were removed and placed
 in a petri dish on filter paper and sprayed with water daily.
DOI: 10.5061/dryad.51c59zw5k
title: Data from: The geographic mosaic of arms race coevolution is closely matched to prey population structure

description: Reciprocal adaptation is the hallmark of arms race coevolution. Local
 coadaptation between natural enemies should generate a geographic mosaic
 pattern where both species have roughly matched abilities across their
 shared range. However, mosaic variation in ecologically relevant traits
 can also arise from processes unrelated to reciprocal selection, such as
 population structure or local environmental conditions. We tested whether
 these alternative processes can account for trait variation in the
 geographic mosaic of arms race coevolution between resistant garter snakes
 (Thamnophis sirtalis) and toxic newts (Taricha granulosa). We found that
 predator resistance and prey toxin levels are functionally matched in
 co-occurring populations, suggesting that mosaic variation in the
 armaments of both species results from the local pressures of reciprocal
 selection. By the same token, phenotypic and genetic variation in snake
 resistance deviates from neutral expectations of population genetic
 differentiation, showing a clear signature of adaptation to local toxin
 levels in newts. Contrastingly, newt toxin levels are best predicted by
 genetic differentiation among newt populations, and to a lesser extent, by
 the local environment and snake resistance. Exaggerated armaments suggest
 that coevolution occurs in certain hotspots, but prey population structure
 seems to be of particular influence on local phenotypic variation in both
 species throughout the geographic mosaic. Our results imply that processes
 other than reciprocal selection, like historical biogeography and
 environmental pressures, represent an important source of variation in the
 geographic mosaic of coevolution. Such a pattern supports the role of
 “trait remixing” in the geographic mosaic theory, the process by which
 non-adaptive forces dictate spatial variation in the interactions among
 species.
DOI: 10.5061/dryad.v9s4mw6sc
title: Data from: Evolutionary trade-offs of insecticide resistance – the fitness costs associated with target-site mutations in the nAChR of Drosophila melanogaster

description: The evolution of resistance to drugs and pesticides poses a major threat
 to human health and food security. Neonicotinoids are highly effective
 insecticides used to control agricultural pests. They target the insect
 nicotinic acetylcholine receptor and mutations of the receptor that confer
 resistance have been slow to develop, with only one field-evolved mutation
 being reported to date. This is an arginine to threonine substitution at
 position 81 of the nAChR_β1 subunit in neonicotinoid resistant aphids. To
 validate the role of R81T in neonicotinoid resistance and to test whether
 it may confer any significant fitness costs to insects, CRISPR/Cas9 was
 used to introduce an analogous mutation in the genome of Drosophila
 melanogaster. Flies carrying R81T showed an increased tolerance
 (resistance) to neonicotinoid insecticides, accompanied by a significant
 reduction in fitness. In comparison, flies carrying a deletion of the
 whole nAChR_α6 subunit, the target-site of spinosyns, showed an increased
 tolerance to this class of insecticides but presented almost no fitness
 deficits.