cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20260890
title: Raw Data

description: Contents in C:\Bachelorproject\Data_Thesis_FleurVerdonkschot_12228125 <br> In this folder the raw data of the mass spectrometer and root weight of Cucumis sativus are stored <br> In Data_MS_Thesis_FleurVerdonkschot_12228125 the extracted peak areas of themass spectrometer are stored, for the freeze drying and the SPE methods. <br> In Raw_Data_Thesis_FleurVerdonkschot_12228125 the varying sheets contain the following data: -Sample identification (the treatment of each sample, the label and its randomization number) -The table lay-out (where each plant was placed according to the randomization) -The rootweight of each sample -Freeze drying: the peak areas of each sample before and after normalization with the root weight -SPE: the peak areas of each sample before and after normalization with the root weight -The signal to noise ratio of each relevant sample and their means <br> Data format: [Sample ID]_[VALUE]
DOI: 10.6084/m9.figshare.20260890.v2
title: Raw Data

description: Contents in C:\Bachelorproject\Data_Thesis_FleurVerdonkschot_12228125 <br> In this folder the raw data of the mass spectrometer and root weight of Cucumis sativus are stored <br> In Data_MS_Thesis_FleurVerdonkschot_12228125 the extracted peak areas of themass spectrometer are stored, for the freeze drying and the SPE methods. <br> In Raw_Data_Thesis_FleurVerdonkschot_12228125 the varying sheets contain the following data: -Sample identification (the treatment of each sample, the label and its randomization number) -The table lay-out (where each plant was placed according to the randomization) -The rootweight of each sample -Freeze drying: the peak areas of each sample before and after normalization with the root weight -SPE: the peak areas of each sample before and after normalization with the root weight -The signal to noise ratio of each relevant sample and their means <br> Data format: [Sample ID]_[VALUE]
DOI: 10.6084/m9.figshare.20260890.v1
title: Data of the mass spectrometer

description: Contents in C:\Bachelorproject\Data_Thesis_FleurVerdonkschot_12228125 <br> In this folder the raw data of the mass spectrometer and root weight of Cucumis sativus are stored <br> In Data_MS_Thesis_FleurVerdonkschot_12228125 the extracted peak areas of themass spectrometer are stored, for the freeze drying and the SPE methods. <br> In Raw_Data_Thesis_FleurVerdonkschot_12228125 the varying sheets contain the following data: -Sample identification (the treatment of each sample, the label and its randomization number) -The table lay-out (where each plant was placed according to the randomization) -The rootweight of each sample -Freeze drying: the peak areas of each sample before and after normalization with the root weight -SPE: the peak areas of each sample before and after normalization with the root weight -The signal to noise ratio of each relevant sample and their means <br> Data format: [Sample ID]_[VALUE]
DOI: 10.25402/pme.20267904
title: Supplementary Table – RNA-based next generation sequencing in non-small-cell lung cancer in a routine setting: an experience from an Italian referral center

description: Supplementary Table 1. Clinical features of analyzed patients and next generation sequencing technical parameters. Abbreviations: ALK: anaplastic lymphoma kinase; CD74: CD74 Molecule; EML4: Echinoderm Microtubule Associated Protein Like 4; FNAB: fine needle aspiration biopsy; KIF5B: Kinesin Family Member 5B; NC: neoplastic cells; RET: Rearranged During Transfection; ROS1: ROS proto/oncogene 1
DOI: 10.25402/pme.20267904.v1
title: Supplementary Table – RNA-based next generation sequencing in non-small-cell lung cancer in a routine setting: an experience from an Italian referral center

description: Supplementary Table 1. Clinical features of analyzed patients and next generation sequencing technical parameters. Abbreviations: ALK: anaplastic lymphoma kinase; CD74: CD74 Molecule; EML4: Echinoderm Microtubule Associated Protein Like 4; FNAB: fine needle aspiration biopsy; KIF5B: Kinesin Family Member 5B; NC: neoplastic cells; RET: Rearranged During Transfection; ROS1: ROS proto/oncogene 1
DOI: 10.6084/m9.figshare.18318884
title: RDA_Biomass.csv

description: Here we provide the data needed to reproduce the multivariate analysys (partial redundancy analysis) of elasmobranch BCPUE between PPAs and UPAs
DOI: 10.5281/zenodo.6809820
title: Net effect of environmental fluctuations in multiple global-change drivers across the tree of life

description: This dataset contains the raw data presented in the article and supplementary material by M. J. Cabrerizo and E. Marañón entitled: "<strong>Net effect of environmental fluctuations in multiple global-change drivers across the tree of life"</strong>
description: This research was supported by the Spanish Ministry of Science, Innovation and Universities through the project 'Responses of marine phytoplankton to environmental variability across levels of biological organization' (POLARIS, Grant No. PGC2018-094553B-I00). MJC was funded by Juan de la Cierva-Formación (FJCI2017-32318) and Incorporación (IJC2019-040850-I) postdoctoral grants from the Spanish Ministry of Science, Innovation and Universities, and by Asociación Española de Ecología Terrestre and Asociación Ibérica de Ecología through the 2021 AEET-SIBECOL call 'Ayudas a proyectos de investigación en ecología (Consolidando Investigación)'.
DOI: 10.5281/zenodo.6809819
title: Net effect of environmental fluctuations in multiple global-change drivers across the tree of life

description: This dataset contains the raw data presented in the article and supplementary material by M. J. Cabrerizo and E. Marañón entitled: "<strong>Net effect of environmental fluctuations in multiple global-change drivers across the tree of life"</strong>
description: This research was supported by the Spanish Ministry of Science, Innovation and Universities through the project 'Responses of marine phytoplankton to environmental variability across levels of biological organization' (POLARIS, Grant No. PGC2018-094553B-I00). MJC was funded by Juan de la Cierva-Formación (FJCI2017-32318) and Incorporación (IJC2019-040850-I) postdoctoral grants from the Spanish Ministry of Science, Innovation and Universities, and by Asociación Española de Ecología Terrestre and Asociación Ibérica de Ecología through the 2021 AEET-SIBECOL call 'Ayudas a proyectos de investigación en ecología (Consolidando Investigación)'.
DOI: 10.6084/m9.figshare.18318887
title: RDA_Dens.csv

description: Here we provide the data needed to reproduce the multivariate analysys (partial redundancy analysis) of elasmobranch NCPUE between PPAs and UPAs
DOI: 10.5281/zenodo.6809889
title: Direct RNA targeted in situ sequencing for transcriptomic profiling in tissue

description: You can find here the Direct RNA In Situ Sequencing (HybISS-based) maps generated using the Hight Sensitivity kit from CARTANA AB. They include half a mouse brain coronal section, targeting 50 genes. Genes were targeted in a sequential manner. Both reads, DAPI staining and segmented cells are included. The analysis of the same cells, but using 10X magnification are also provided in an anndata object.
DOI: 10.5281/zenodo.6809888
title: Direct RNA targeted in situ sequencing for transcriptomic profiling in tissue

description: You can find here the Direct RNA In Situ Sequencing (HybISS-based) maps generated using the Hight Sensitivity kit from CARTANA AB. They include half a mouse brain coronal section, targeting 50 genes. Genes were targeted in a sequential manner. Both reads, DAPI staining and segmented cells are included. The analysis of the same cells, but using 10X magnification are also provided in an anndata object.
DOI: 10.6084/m9.figshare.18318890
title: Mature_immature_analysis.R

description: Here we provide the script needed to reproduce the kernel density plots and gamlss analysis of mature and immature elasmobranch both generla pattern and comparing PPAs and UPAs
DOI: 10.6084/m9.figshare.18318893
title: RDA_ELA.R

description: Here we provide the script needed to reproduce the multivariate analyses (partial redindancy analysis) of elasmobranch BCPUE and NCPUE between PPAs and UPAs
DOI: 10.5281/zenodo.6807534
title: Liu_et_al_DMG_In Situ Sequencing_expression_maps

description: This repository includes the In Situ Sequencing datasets (HybISS) generated for Liu et al. 2022. Both gene expression maps (reads.zip) as well as cell type maps (this is, after segmenting individual cells) are included. Malignant cell types were assigned based on probabilistic cell typing by ISS (Qian et al. 2020) and can be found at celltyping_malignant.zip. Healthy cells, in addition to the described malignant ones, were included in celltyping_malignant_and_healthy.zip. In addition annotated data objects (anndata) were generated for all 16 samples (anndata_objects)
DOI: 10.5281/zenodo.6805729
title: Liu_et_al_DMG_In Situ Sequencing_expression_maps

description: This repository includes the In Situ Sequencing datasets (HybISS) generated for Liu et al. 2022. Both gene expression maps (reads.zip) as well as cell type maps (this is, after segmenting individual cells) are included. Malignant cell types were assigned based on probabilistic cell typing by ISS (Qian et al. 2020) and can be found at celltyping_malignant.zip. Healthy cells, in addition to the described malignant ones, were included in celltyping_malignant_and_healthy.zip. In addition annotated data objects (anndata) were generated for all 16 samples (anndata_objects)
DOI: 10.25402/fon.20267916
title: Supplementary Material – Physician treatment preferences for relapsed/refractory multiple myeloma: a discrete choice experiment

description: Supplementary Methods
DOI: 10.25402/fon.20267916.v1
title: Supplementary Material – Physician treatment preferences for relapsed/refractory multiple myeloma: a discrete choice experiment

description: Supplementary Methods
DOI: 10.6084/m9.figshare.18318875
title: ZAGA_GAMLSS.R

description: Here we provide the code needed to reproduce the gamlss analyses of elasmobranch BCPUE and NCPUE between PPAs and UPAs
DOI: 10.6084/m9.figshare.18318875.v1
title: ZAGA_GAMLSS.R

description: Here we provide the code needed to reproduce the gamlss analyses of elasmobranch BCPUE and NCPUE between PPAs and UPAs
DOI: 10.6084/m9.figshare.20260893
title: Raw data

description: Contents in C:\Bachelorproject\Data_Thesis_FleurVerdonkschot_12228125 <br> In this folder the raw data of the mass spectrometer and root weight of Cucumis sativus are stored <br> In Data_MS_Thesis_FleurVerdonkschot_12228125 the extracted peak areas of themass spectrometer are stored, for the freeze drying and the SPE methods. <br> In Raw_Data_Thesis_FleurVerdonkschot_12228125 the varying sheets contain the following data: -Sample identification (the treatment of each sample, the label and its randomization number) -The table lay-out (where each plant was placed according to the randomization) -The rootweight of each sample -Freeze drying: the peak areas of each sample before and after normalization with the root weight -SPE: the peak areas of each sample before and after normalization with the root weight -The signal to noise ratio of each relevant sample and their means <br> Data format: [Sample ID]_[VALUE]
DOI: 10.6084/m9.figshare.20260893.v2
title: Raw data

description: Contents in C:\Bachelorproject\Data_Thesis_FleurVerdonkschot_12228125 <br> In this folder the raw data of the mass spectrometer and root weight of Cucumis sativus are stored <br> In Data_MS_Thesis_FleurVerdonkschot_12228125 the extracted peak areas of themass spectrometer are stored, for the freeze drying and the SPE methods. <br> In Raw_Data_Thesis_FleurVerdonkschot_12228125 the varying sheets contain the following data: -Sample identification (the treatment of each sample, the label and its randomization number) -The table lay-out (where each plant was placed according to the randomization) -The rootweight of each sample -Freeze drying: the peak areas of each sample before and after normalization with the root weight -SPE: the peak areas of each sample before and after normalization with the root weight -The signal to noise ratio of each relevant sample and their means <br> Data format: [Sample ID]_[VALUE]
DOI: 10.6084/m9.figshare.20260893.v1
title: Raw data

description: Contents in C:\Bachelorproject\Data_Thesis_FleurVerdonkschot_12228125 <br> In this folder the raw data of the mass spectrometer and root weight of Cucumis sativus are stored <br> In Data_MS_Thesis_FleurVerdonkschot_12228125 the extracted peak areas of themass spectrometer are stored, for the freeze drying and the SPE methods. <br> In Raw_Data_Thesis_FleurVerdonkschot_12228125 the varying sheets contain the following data: -Sample identification (the treatment of each sample, the label and its randomization number) -The table lay-out (where each plant was placed according to the randomization) -The rootweight of each sample -Freeze drying: the peak areas of each sample before and after normalization with the root weight -SPE: the peak areas of each sample before and after normalization with the root weight -The signal to noise ratio of each relevant sample and their means <br> Data format: [Sample ID]_[VALUE]
DOI: 10.6084/m9.figshare.18318881.v1
title: imm_mat_analysis.RData

description: Here we provide the data needed to reproduce the kernel density plots and gamlss analysis of mature and immature elasmobranch both generla pattern and comparing PPAs and UPAs
DOI: 10.5281/zenodo.6802956
title: The stellar parameters and the quantities of the residual emissions of the detected active stars in the LAMOST-K2 survey

description: The full Table 1 in <em>Investigation of stellar magnetic activity using variational autoencoder based on low-resolution spectroscopic survey</em> (Xiang, Gu & Cao, 2022, MNRAS, 514, 4781; arXiv:2206.07257). The columns are LAMOST obsid, K2 ID, Teff, logg, [Fe/H], EW_res_Halpha, EW_res_Ca II 8498, EW_res_Ca II 8542, EW_res_Ca II 8662, log F_Halpha, log F_Ca, log R'_Halpha, log R'_Ca. The chromospheric emissions were detected and measured with the spectral subtraction technique, which removes the inactive template spectra (photospheric contribution) from the observed stellar spectra. In this work, we used the variational autoencoder neural networks to efficiently generate the proper template spectra in a data-driven manner. More details can be found in the associated paper (https://arxiv.org/abs/2206.07257). The demo code can be found on GitHub (https://github.com/xylib/vae-for-spectroscopic-survey).
DOI: 10.5281/zenodo.6802955
title: The stellar parameters and the quantities of the residual emissions of the detected active stars in the LAMOST-K2 survey

description: The full Table 1 in <em>Investigation of stellar magnetic activity using variational autoencoder based on low-resolution spectroscopic survey</em> (Xiang, Gu & Cao, 2022, MNRAS, 514, 4781; arXiv:2206.07257). The columns are LAMOST obsid, K2 ID, Teff, logg, [Fe/H], EW_res_Halpha, EW_res_Ca II 8498, EW_res_Ca II 8542, EW_res_Ca II 8662, log F_Halpha, log F_Ca, log R'_Halpha, log R'_Ca. The chromospheric emissions were detected and measured with the spectral subtraction technique, which removes the inactive template spectra (photospheric contribution) from the observed stellar spectra. In this work, we used the variational autoencoder neural networks to efficiently generate the proper template spectra in a data-driven manner. More details can be found in the associated paper (https://arxiv.org/abs/2206.07257). The demo code can be found on GitHub (https://github.com/xylib/vae-for-spectroscopic-survey).
DOI: 10.17894/ucph.106873e0-8dca-45af-867c-60b3be61fd3d
title: Raw data for Electronic transport in double-nanowire superconducting islands with multiple terminals
DOI: 10.6084/m9.figshare.20267928.v1
title: Supplementary Material for: Cytotoxic Effects of the Schweinfurthin Analog 5′-Methylschweinfurthin G in Malignant Plasma Cells

description: <b><i>Introduction:</i></b> Multiple myeloma (MM) is a B plasma cell malignancy currently incurable, and novel therapeutics are needed. Evidences regarding the effect of natural compound schweinfurthins suggest that hematological cancers showed growth inhibitory effects to this family of compounds at single nanomolar concentrations. In this study, we evaluated the cytotoxicity of the schweinfurthin synthetic analog 5′-methylschweinfurthin G (MeSG) in MM cell lines, to better understand the validity of this compound as a therapeutic candidate for further studies in MM. <b><i>Methods:</i></b> MeSG toxicity against MM cell lines RPMI-8226, MM.1S, and H-929 was evaluated. Trypan blue exclusion and MTT assays measured cell viability and mitochondrial activity, respectively. Flow cytometry was performed to detect apoptotic mitochondria. Flow cytometry and Western blotting techniques were used to investigate apoptosis and to examine the cell cycle. Western blotting was used to determine AKT activation upon MeSG treatment. <b><i>Results:</i></b> We provide evidence that in all MM cells analyzed, MeSG exerts diverse cytotoxic effects. MeSG treatment of MM.1S and H-929, but not in RPMI-8226, causes a loss of mitochondria membrane potential. MeSG causes an arrest in G<sub>2</sub>/M, especially in RPMI-8226, supported by decreased levels of cyclin-B1 and early increased levels of p21. Finally, there is a diverse response to the MeSG treatment for AKT phosphorylation. MM.1S and H-929 showed a marked decrease in AKT phosphorylation at earlier time points compared to the RPMI-8226 line. <b><i>Conclusions:</i></b> MeSG cytotoxicity has been confirmed in all of 3 cell lines studied. Results suggest an early event of increased reactive oxygen species, and/or involvement of cholesterol homeostasis via decreased AKT activation, both of which are currently under investigation.
DOI: 10.6084/m9.figshare.20267901
title: Untitled1.sav

description: data
DOI: 10.57745/gzkuzs/l2bvtx
title: SOUND.zip

description: :unav
DOI: 10.57745/gzkuzs/7qr3fh
title: SOUND_LONG.zip

description: :unav
DOI: 10.57745/gzkuzs/tpdd7m
title: KYMO_SOUND.zip

description: :unav
DOI: 10.57745/gzkuzs/6e4dco
title: VIDEOS.zip

description: :unav
DOI: 10.6084/m9.figshare.18318881
title: imm_mat_analysis.RData

description: Here we provide the data needed to reproduce the kernel density plots and gamlss analysis of mature and immature elasmobranch both generla pattern and comparing PPAs and UPAs
DOI: 10.6084/m9.figshare.18318881.v2
title: imm_mat_analysis.RData

description: Here we provide the data needed to reproduce the kernel density plots and gamlss analysis of mature and immature elasmobranch both generla pattern and comparing PPAs and UPAs
DOI: 10.6084/m9.figshare.20267940
title: The new educational paradigm in COVID era: Can Blackboard replace physical teaching in EFL writing classrooms?

description: This study investigates the effectiveness of Blackboard in promoting EFL students’ writing performance in the Department of English Language and Translation at Qassim University. The data were collected for two periods: before (spring 2019) and after (spring 2020) the spread of COVID-19 virus. The study analyzed the students’ final grades in three different levels of writing courses. The results were collected and analyzed across the two different teaching approaches (face-to-face and Blackboard) to evaluate the two learning experiences and to highlight suggestions for enhancing students’ and teachers’ experience in online learning in the future. This study enlisted two groups of undergraduate male and female Saudi students who had applied for English language courses at Qassim University. Ethical approval was obtained (issued on, Sep. 25, 2020) from the deanship of scientific affairs to the head of the departments and the students. Students were also assured that their information would be only used for the study and that they were not required to disclose their identity in any way. Verbal consent of the participants was obtained because the ethics committee at the Qassim University approves verbal consent. Moreover, it is very difficult to get written consent from 833 participants. Still, as the study did not ask indulge the participants in interview, observation or questionnaire, it is enough to get permission from the University ethics committee. The consent letter states " This research meets the high ethical and scientific standards expected by society, and the participants have informed the Committee that they have no problem with the outcomes of the research work being published". The first group comprised students who took Writing 1, 2, and 3 prior to the pandemic, and the second group were those who took the same courses after the pandemic. The participants were assigned to take these three compulsory writing courses in the first three semesters after joining the program. The study sample thus included a total of 833 participants (287 males and 546 females). The students had prior experience with Blackboard as a learning tool. All freshman students, in traditional and pandemic times, are introduced to the most important features of Blackboard at the beginning of each semester. Additionally, three general courses were taught completely online during the first semester after students’ full enrolment in the program.
DOI: 10.6084/m9.figshare.20267940.v1
title: The new educational paradigm in COVID era: Can Blackboard replace physical teaching in EFL writing classrooms?

description: This study investigates the effectiveness of Blackboard in promoting EFL students’ writing performance in the Department of English Language and Translation at Qassim University. The data were collected for two periods: before (spring 2019) and after (spring 2020) the spread of COVID-19 virus. The study analyzed the students’ final grades in three different levels of writing courses. The results were collected and analyzed across the two different teaching approaches (face-to-face and Blackboard) to evaluate the two learning experiences and to highlight suggestions for enhancing students’ and teachers’ experience in online learning in the future. This study enlisted two groups of undergraduate male and female Saudi students who had applied for English language courses at Qassim University. Ethical approval was obtained (issued on, Sep. 25, 2020) from the deanship of scientific affairs to the head of the departments and the students. Students were also assured that their information would be only used for the study and that they were not required to disclose their identity in any way. Verbal consent of the participants was obtained because the ethics committee at the Qassim University approves verbal consent. Moreover, it is very difficult to get written consent from 833 participants. Still, as the study did not ask indulge the participants in interview, observation or questionnaire, it is enough to get permission from the University ethics committee. The consent letter states " This research meets the high ethical and scientific standards expected by society, and the participants have informed the Committee that they have no problem with the outcomes of the research work being published". The first group comprised students who took Writing 1, 2, and 3 prior to the pandemic, and the second group were those who took the same courses after the pandemic. The participants were assigned to take these three compulsory writing courses in the first three semesters after joining the program. The study sample thus included a total of 833 participants (287 males and 546 females). The students had prior experience with Blackboard as a learning tool. All freshman students, in traditional and pandemic times, are introduced to the most important features of Blackboard at the beginning of each semester. Additionally, three general courses were taught completely online during the first semester after students’ full enrolment in the program.