cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12789183
title: Protistan metabolism across the western North Atlantic Ocean revealed through autonomous underwater profiling

description: Metatranscriptomic assembly, predicted open reading frames, counts, and annotation files from seawater samples obtained in the western North Atlantic Ocean. GitHub notebooks are located here: https://github.com/cnatalie/BATS. Assembly was created using the eukrhythmic pipeline: https://github.com/AlexanderLabWHOI/eukrhythmic



merged_merged.fasta.gz = Final assembly, merged across 44 metatranscriptomes using 4 different assemblers

merged.fasta.transdecoder.pep.zip = Open reading frames of final assembly, predicted by Transdecoder 

merged.fasta.transdecoder-estimated-taxonomy.out.zip = EUKulele-derived taxonomic annotations of ORFs using a combined EukProt, PhyloDB, and RefSeq reference database

newtaxa.eukprot.merged.fasta.transdecoder-estimated-taxonomy.out.zip = similar to above, but manually curated mid-level taxonomy for supergroups of interest

eggnog.emapper.annotations.zip = eggnog-mapper annotations of ORFs

table.tab.zip = counts associated with ORFs (merged.fasta.transdecoder.pep) generated with Salmon

TPM_table.tab.zip = community-wide TPM (normalized) counts associated with ORFs (merged.fasta.transdecoder.pep) generated with Salmon

copiesperL_ORFs_FactorIncluded.csv.zip = raw counts associated with ORFs (merged.fasta.transdecoder.pep) converted to copies per L taking into account spiked-in RNA standard concentration (copies), standard reads mapped, volume of seawater filtered, and dilution factor used in library preparation

assembly.table.tab.zip = counts associated with final assembly (merged_merged.fasta) generated with Salmon

SamplesViewReportCLIO_AE1913merged_trans210506_updated220606exclusive.zip = Exclusive spectral counts associated with ORFs (merged.fasta.transdecoder.pep). Peptide-spectrum matches were performed using Sequest algorithm within IseNode Proteome Discoverer 2.2.0.388 (Thermo Fisher Scientific). Scaffold 5.1.2 (Proteome Software)  was used for protein grouping and exclusive spectral counting. Note, the (+x) data has been removed from protein names, which indicates whether (and how many) proteins sharing peptides were designated into the same protein group. 

cds.length2.tab.zip = Length of proteins (ORFs) in nucleotide base pairs

CTD.zip = CTD files from cruise AE1913
DOI: 10.15468/dl.tn75ry
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"10808630","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012847-241024112534372/datasets/export for details.
DOI: 10.15468/dl.zyyegn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"5252608","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012848-241024112534372/datasets/export for details.
DOI: 10.15468/dl.v7z8ff
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Belize",
 "DatasetKey is one of (Tropicos MO Specimen Data, Field Museum of Natural History (Botany) Seed Plant Collection, Tropicos Specimens Non-MO, Rapid Assessment Program (RAP) Biodiversity Survey Database, NMNH Extant Specimen Records (USNM, US), DAV - University of California, Davis Center for Plant Diversity - Vascular Plants, Naturalis Biodiversity Center (NL) - Botany, iNaturalist Research-grade Observations, Natural History Museum (London) Collection Specimens, herbario)",
 "OccurrenceStatus is Present",
 "TaxonKey is Annona liebmanniana Baill."
 ]
}

 The dataset includes 30 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012849-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pa6zwd
title: Occurrence Download

description: A dataset containing 307 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"4532125","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 307 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012850-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dk257j
title: Occurrence Download

description: A dataset containing 4959 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is SGHN - Biota Galicia"
 ]
}

 The dataset includes 4959 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012851-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.o3hmgt0w
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2734 records)
DOI: 10.15468/dl.nvdpmz
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is BRA.17_1",
 "TaxonKey is Pilocarpus jaborandi Holmes"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012853-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ka65m
title: Occurrence Download

description: A dataset containing 451 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calyptocephalella gayi (Duméril & Bibron, 1841)"
 ]
}

 The dataset includes 451 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012854-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vww3jy
title: Occurrence Download

description: A dataset containing 224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "InstitutionCode is PSM",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia",
 "VerbatimScientificName is tamiasciurus douglasii"
 ]
}

 The dataset includes 224 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012855-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t3ez92
title: Occurrence Download

description: A dataset containing 13098 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chamaerops humilis L.)",
 "Country is one of (Spain)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 13098 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012856-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14014994
title: Spin RCT Database

description: This is a database of a Spin RCT
DOI: 10.5281/zenodo.14014995
title: Spin RCT Database

description: This is a database of a Spin RCT
DOI: 10.6084/m9.figshare.27362247
title: <b>Multilingualism and Working Memory Capacity: Assessing Cognitive Function Across Diverse Linguistic Groups</b>- Data

description: This study investigated the interaction between multilingualism and working memory (WM) capacity in language processing among individuals proficient in languages from diverse linguistic families. While previous research has focused on multilingual participants within the same linguistic group, our study explored how WM differs in individuals whose native language is from the Afro-Asiatic family and whose second and third languages are from the Indo-European group. Thirty Moroccan college students, all native speakers of Darija, participated. They had varying proficiencies in French and English. Participants' WM capacities were assessed using Forward Digit Span (FDS) and Backward Digit Span (BDS) tasks administered in Darija, French, and English. Our Results revealed that Darija demonstrated significantly higher WM capacity compared to French and English, with the most pronounced differences in the BDS task. These findings emphasize the importance of considering linguistic diversity when examining WM capacity in multilingual individuals.
DOI: 10.15468/dl.evavyq
title: Occurrence Download

description: A dataset containing 1271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cinclodes pabsti Sick, 1969"
 ]
}

 The dataset includes 1271 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012857-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c94jg3
title: Occurrence Download

description: A dataset containing 2151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "OccurrenceStatus is Present",
 "TaxonKey is Choloepus hoffmanni Peters, 1858"
 ]
}

 The dataset includes 2151 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012858-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ytah8
title: Occurrence Download

description: A dataset containing 134 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kinosternon alamosae Berry & Legler, 1980"
 ]
}

 The dataset includes 134 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012859-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mpzjrt
title: Occurrence Download

description: A dataset listing the 20 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is EDP Foz-Tua: Dragonflies and Damselflies (Odonata) - Ecological Monitoring Program (2020)"
 ]
}

 The dataset's 20 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012838-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dfmc2x
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Belize",
 "DatasetKey is one of (Aprovechamiento Forestal en el área de influencia del Proyecto Hidroeléctrico Ituango, Naturalis Biodiversity Center (NL) - Botany, Tropicos MO Specimen Data, Tropicos Specimens Non-MO, NMNH Extant Specimen Records (USNM, US), Digitalización y Sistematización de las Colecciones Biológicas Nacionales del Instituto de Biología, UNAM (Plantas vasculares), Field Museum of Natural History (Botany) Seed Plant Collection, The New York Botanical Garden Herbarium (NY), RB - Rio de Janeiro Botanical Garden Herbarium Collection, Plantae of Costa Rica (INBio), Edinburgh (E) Herbarium Specimens, DAV - University of California, Davis Center for Plant Diversity - Vascular Plants, Museu Paraense Emilio Goeldi Herbarium, Natural History Museum (London) Collection Specimens, Computarización del Herbario ENCB, IPN. Fase IV. Base de datos de la familia Pinaceae y de distintas familias de la clase Magnoliopsida depositadas en el Herbario de la Escuela Nacional de Ciencias Biológicas, IPN, MG herbarium - Museu Paraense Emílio Goeldi - Herbário Virtual REFLORA, University of South Florida Herbarium (USF), University of Michigan Herbarium, Royal Botanic Gardens, Kew - Herbarium Specimens)",
 "OccurrenceStatus is Present",
 "TaxonKey is Annona mucosa Jacq."
 ]
}

 The dataset includes 46 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012860-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m5recx
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is BRA.17_1",
 "TaxonKey is Solanum jabrense Agra & M.Nee"
 ]
}

 The dataset includes 18 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012861-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/128700feb3bbc3ffe5800e7b232bd81f
title: LAGOS-US LANDSAT: Data module of remotely-sensed water quality estimates for U.S. lakes over 4 ha from 1984 to 2020

description: This data package, LAGOS-US LANDSAT, is one of the extension data modules of the LAGOS-US platform that provides six water quality estimates (chlorophyll, Secchi depth, dissolved organic carbon, total suspended solids, turbidity, and true water color) from remote sensing for lakes ≥ 4 ha in the conterminous U.S. (48 states plus the District of Columbia) for the years 1984-2020. These estimates are generated through machine learning models on in-lake water quality matchups from LAGOS-US LIMNO with Landsat 5, 7, and 8 whole lake median reflectance values and pixel-wise band ratios that are subsequently used to make predictions across the U.S. The LANDSAT module contains remotely sensed reflectance values for 136,977 of the 137,465 lakes ≥ 4 ha from the LAGOS-US research platform. Within the module are a total of 45,867,023 sets of reflectance values, a matchup dataset with a window of up to 7 calendar days with in situ data, and associated water quality parameter predictions for each reflectance set. Additional quality control flags are provided for predictions indicating whether reflectance extractions included negative values, the percent of the maximum pixels ever retrieved for that lake that the predictions are based on, and whether there are shared calendar day predictions due to scene overlap.
DOI: 10.15468/dl.4keqnr
title: Occurrence Download

description: A dataset containing 2641 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material citation, Specimen)",
 "CoordinateUncertaintyInMeters is less than or equal to 1000.0",
 "OccurrenceStatus is Present",
 "TaxonKey is Glossophaga soricina (Pallas, 1766)"
 ]
}

 The dataset includes 2641 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012862-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p5rkjw
title: Occurrence Download

description: A dataset containing 13098 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chamaerops humilis L.)",
 "Country is one of (Spain)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 13098 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012863-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yabvgc
title: Occurrence Download

description: A dataset containing 1709711 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Pl@ntNet observations",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 1709711 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012775-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14014859
title: C2SMARTER Year 1 Project "Enhancing Transit Access and Safety Through Equitable Micromobility Solution"

description: These 6 PDF files are the maps produced from Task 1 of the C2SMARTER Year 1 project Enhancing Transit Access and Safety Through Equitable Micromobility Solution.

Site A and Site B are transit underserved areas (census tracts in El Paso, Texas) identified in Task 1 of this project.

The first 2 maps shows the underserved areas overlaid with bus stops (taken from the General Transit Feed Specification or GTFS database).

The next 2 maps shows the underserved areas overlaid with locations of crashes involving pedestrians and bicycles from 1/1/2024 to 7/30/2024..

The last 2 maps color coded the streets in Site A and Site B with bicycle level of traffic stress (LTS).
description: Five (5) additional files were uploaded on 10/30/2024.

Low_Income_HH.zip is the shape file containing 9 layers that display the percent of households in each census tract in the City of El Paso, TX that are below Federal proverty guidelines.

Zero_Car_HH.zip is the shape file containing 9 layers that display the percent of households in each census tract in the CIty of El Paso, TX that do not own any priate car.

Crash_SiteA_SiteB.zip is the shape file containing 10 layers that display the locations of the crashes surrounding the selected bus stops (Bus Stops A1 and A2 in Site A and Bus Stops B1 and B2 in Site B). The crashes on display occurred from 1/1/2014 to 7/30/2024. Only the crashes involving pedestrians within 0.25 mile from each bus stop and crashes involving bicycles within 0.75 mile from each bus stop are included.

Bus_Stop_SiteA_SiteB is the shape file containing 8 layers that show the bus stops with the underserced communties selected in this project. They are namely Site A and Site B respectively.

Instruction_All.pdf provides the instructions on how to import and open the shape files.
DOI: 10.5281/zenodo.13240244
title: C2SMARTER Year 1 Project "Enhancing Transit Access and Safety Through Equitable Micromobility Solution"

description: These 6 PDF files are the maps produced from Task 1 of the C2SMARTER Year 1 project Enhancing Transit Access and Safety Through Equitable Micromobility Solution.

Site A and Site B are transit underserved areas (census tracts in El Paso, Texas) identified in Task 1 of this project.

The first 2 maps shows the underserved areas overlaid with bus stops (taken from the General Transit Feed Specification or GTFS database).

The next 2 maps shows the underserved areas overlaid with locations of crashes involving pedestrians and bicycles from 1/1/2024 to 7/30/2024..

The last 2 maps color coded the streets in Site A and Site B with bicycle level of traffic stress (LTS).
description: Five (5) additional files were uploaded on 10/30/2024.

Low_Income_HH.zip is the shape file containing 9 layers that display the percent of households in each census tract in the City of El Paso, TX that are below Federal proverty guidelines.

Zero_Car_HH.zip is the shape file containing 9 layers that display the percent of households in each census tract in the CIty of El Paso, TX that do not own any priate car.

Crash_SiteA_SiteB.zip is the shape file containing 10 layers that display the locations of the crashes surrounding the selected bus stops (Bus Stops A1 and A2 in Site A and Bus Stops B1 and B2 in Site B). The crashes on display occurred from 1/1/2014 to 7/30/2024. Only the crashes involving pedestrians within 0.25 mile from each bus stop and crashes involving bicycles within 0.75 mile from each bus stop are included.

Bus_Stop_SiteA_SiteB is the shape file containing 8 layers that show the bus stops with the underserced communties selected in this project. They are namely Site A and Site B respectively.

Instruction_All.pdf provides the instructions on how to import and open the shape files.
DOI: 10.15468/dl.a6pyn8
title: Occurrence Download

description: A dataset containing 115562 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"5858758","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 115562 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012745-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.