cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.20350/digitalcsic/15174
title: Modeled deep structure of the South Orkney Microcontinent (SOM): sedimentary cover thickness, geometry of the intruded batholith causing the Pacific Margin Anomaly (PMA) and depth of the Moho

description: The opening of the Scotia Arc resulted in the final breakup of the land bridge between South America and the Antarctic Peninsula. The South Orkney Microcontinent (SOM) constituted part of this former connection and it is now the largest continental block in the Southern Scotia Arc. We present the first 3D model of the SOM that, given its strategic position and characteristics, allows us to advance the knowledge of the tectonic processes involved in the development of the Scotia Arc. Due to the scarcity of reliable geological data, the initial approximation of the deep structure of the SOM was supported by the calculation of three main geological boundaries from geophysical data: the acoustic basement, the boundary of the magnetic anomaly source and the Moho depth. The 3D model was built, refined and validated by forward modeling and joint inversion of gravity and magnetic data. We have accurately defined the geometry of the sedimentary cover, determined the geometry of the intrusive igneous body causing the Pacific Margin Anomaly (PMA) and mapped the heterogeneity of the crustal thickness. These structural features show a clear relationship to each other and are consistent with an important E-W extension to the east of the SOM during early stages of the Scotia Arc formation, prior to the opening of the Powell Basin.
DOI: 10.20350/digitalcsic/15170
title: The importance of the growth phase to understand the temperature-size rule in marine phytoplankton [Dataset]

description: The temperature-size rule states that as the temperature increases, the body size of organisms decreases. This rule has been observed in a wide range of organisms, including marine phytoplankton and it is particularly important to model and predict the effects of global warming on the structure and functioning of marine ecosystems. This is so because the size of marine phytoplankton is a critical trait that determines their ecological and biogeochemical roles in marine ecosystems. The size of marine phytoplankton is also affected by resource availability, which relates to growth rates. Here, we compare the effects of a long-term exposure to several temperatures on the cell size of three marine microalgae during their growth curves. The species chosen were the cryptophyte Rhodomonas salina, the dinoflagellate Heterocapsa niei, and the diatom Conticribra (previously Thalassiosira) weissflogii. All algae conformed the temperature-size rule during all the phases of the growth curve. However, the size variations of the microalgae in each of the phases were species-specific. R. salina and H. niei showed higher volumes in the exponential growth phase than during the decline of growth and early stationary phases. Contrarily, the diatom showed smaller volumes during the exponential phase of growth than during the other phases. Overall, the effects of growth rate on cell size exceeded those of temperature for the expected ocean warming by the end of the century. These results also partially support the higher relevance of resource supply than temperature in explaining the variability of phytoplankton size structure in marine ecosystems
description: Para las tres microalgas, Rhodomonas salina, Heterocapsa niei, Conticribra weissflogii, abundancias, y volumen a diferentes temperaturas
DOI: 10.20350/digitalcsic/15165
title: Splicing Functional Assays of CHEK2 splice-site variants identified in the BRIDGES project

description: This dataset corresponds to a comprehensive study of splice-site variants of the breast cancer susceptibility gene CHEK2. Variant data have been obtained from the large-scale sequencing project BRIDGES that sequenced 34 genes in 113,000 women. A set of 128 CHEK2 variants at the intron-exon boundaries were identified, 52 of which were predicted spliceogenic. These were introduced into the three minigene constructs by site-directed mutagenesis and tested in MCF-7 cells. Forty-six variants impaired splicing, 26 of which were classified as pathogenic/likely pathogenic variants according to ACMG/AMP-based guidelines, so carrier patients and families may benefit from tailored prevention protocols and personalized therapies.
description: Folder: cDNA_Sequences. Transcript Sequencing. Sub-Folders: cDNA microdeletions CHEK2 1-7 c.684-2G; cDNA_minigenes CHEK2 1-7; cDNA_minigenes CHEK2 6-10; cDNA_minigenes CHEK2 6-14 WT y mutantes; cDNA_minigenes CHEK2 11-15; cDNA_minigenes WT.-- Folder: Fragment_Analysis. Fluorescent Fragment Analysis. Sub-Folders: Fragment_Analysis_microdeletions CHEK2 1-7 c.684-2G; Fragment_Analysis_minigenes CHEK2 1-7; Fragment_Analysis_minigenes CHEK2 6-10; Fragment_Analysis_minigenes CHEK2 6-14 y mutantes; Fragment_Analysis_minigenes CHEK2 11-15; Fragment_Analysis_minigenes WT.-- Folder: Minigenes_Sequences. Sequence files of wild type and mutant constructs. Sub-folders: Microdeletions_CHEK2 1-7-c.684-2G; Minigene_CHEK2 1-7; Minigene_CHEK2 6-10; Minigene_CHEK2 6-14 WT y mutant; Minigene_CHEK2 11-15; minigene_WT.
DOI: 10.20350/digitalcsic/15158
title: STRAUSS Wave parameters obtained from RBR Duo, Atlantic Ocean - Ría de Vigo - Cabo do Mar (NW Iberia) - Feb. 2021 - Oct. 2021

description: This item is made of 2 files: the dataset in netcdf format, a Readme.txt file including a small description of the computed variables, and 1 figure showing the instrument used
description: Wave parameters obtained from RBR Duo in Cabo do Mar from February 2021 to October 2021 under the framework of the STRAUSS project in order to evaluate the effects of ocean waves in selected biological case studies of the Rías Baixas Upwelling System
DOI: 10.20350/digitalcsic/15157
title: STRAUSS Wave parameters obtained from ADCP currents of a RDI 600-kHz Workhorse Acoustic Doppler Current Profiler (ADCP), Atlantic Ocean - Ría de Vigo – Cíes Sur (NW Iberia) - May 2022 - Jun. 2022

description: This item is made of 2 files: the dataset in netcdf format, a Readme.txt file including a small description of the computed variables, and 1 figure showing the instrument used
description: Wave parameters obtained from ACDP currents of a RDI 600-kHz Workhorse Acoustic Doppler Current Profiler (ADCP) in Cíes Sur from May 2022 to June 2020 under the framework of the STRAUSS project in order to evaluate the effects of ocean waves in selected biological case studies of the Rías Baixas Upwelling System
DOI: 10.20350/digitalcsic/15155
title: STRAUSS Wave parameters obtained from RBR Duo, Atlantic Ocean - Ría de Vigo - Limens (NW Iberia) - Oct. 2021 - Jun 2022

description: This item is made of 2 files: the dataset in netcdf format, a Readme.txt file including a small description of the computed variables, and 1 figure showing the instrument used
description: Wave parameters obtained from RBR Duo in Limens from October 2021 to Jun 2022 under the framework of the STRAUSS project in order to evaluate the effects of ocean waves in selected biological case studies of the Rías Baixas Upwelling System
DOI: 10.20350/digitalcsic/15156
title: STRAUSS Wave parameters obtained from RBR Duo, Atlantic Ocean - Ría de Vigo - Limens (NW Iberia) - Feb. 2021 - May 2021

description: This item is made of 2 files: the dataset in netcdf format, a Readme.txt file including a small description of the computed variables, and 1 figure showing the instrument used
description: Wave parameters obtained from RBR Duo in Limens from February 2021 to May 2021 under the framework of the STRAUSS project in order to evaluate the effects of ocean waves in selected biological case studies of the Rías Baixas Upwelling System
DOI: 10.20350/digitalcsic/15153
title: STRAUSS Wave parameters obtained from RBR Duo, Atlantic Ocean - Ría de Vigo - Cabo do Mar (NW Iberia) - Oct. 2021 - Jun. 2022

description: This item is made of 2 files: the dataset in netcdf format, a Readme.txt file including a small description of the computed variables, and 1 figure showing the instrument used
description: Wave parameters obtained from RBR Duo in Cabo do mar from October 2021 to June 2022 under the framework of the STRAUSS project in order to evaluate the effects of ocean waves in selected biological case studies of the Rías Baixas Upwelling System
DOI: 10.20350/digitalcsic/15154
title: SMOS L4 Surface Soil Moisture downscaled maps at 1 km EASE-2 (reprocessed mode) (V.6.1) [Dataset]

description: Data acquisition: Satellite: ESA SMOS mission (Soil Moisture and Ocean Salinity), ECMWF skin temperature at 12 UTC and 16-dayTerra MODIS NDVI version 6.1 Filenames: BEC_SM____SMOS__EUM_L4__X_YYYYMMDDTHHMMSS_001km_1d_REP_v6.1.nc, being: - X the half-orbit type (A for ascending and D for descending), - YYYYMMDDTHHMMSS the central date (year, month, day, hour, minute and second) in Coordinated Universal Time (UTC) of the period covered by the file. Time resolution: Daily. Maps frequency generation: Daily. Sensor: Satellite SMOS / MIRAS. Spatial resolution: 1 km x 1 km. Spatial grid: WGS_84 / EASE2_M01km
description: Improvement of the current SMOS soil moisture products produced by the Barcelona Expert Centre (BEC) and development of new added-value products and/or applications over land.
description: · Surface soil moisture (SM) · Quality flag of surface soil moisture (quality_flag) · Time (time) · Latitude (lat) · Longitude (lon) · Coordinate reference system (crs)
DOI: 10.20350/digitalcsic/15152
title: STRAUSS Wave parameters obtained from RBR Duet3, Atlantic Ocean - Ría de Vigo – Cabo do Mar (NW Iberia) - Nov. 2020 - Jan. 2021

description: This item is made of 2 files: the dataset in netcdf format, a Readme.txt file including a small description of the computed variables, and 1 figure showing the instrument used
description: Wave parameters obtained from RBR Duet in Cabo do Mar from November 2020 to January 2021 under the framework of the STRAUSS project in order to evaluate the effects of ocean waves in selected biological case studies of the Rías Baixas Upwelling System
DOI: 10.20350/digitalcsic/15151
title: STRAUSS Wave parameters obtained from RBR Duet3, Atlantic Ocean - Ría de Vigo - Cies Sur (NW Iberia) - Oct. 2021 - Jan. 2022

description: This item is made of 2 files: the dataset in netcdf format, a Readme.txt file including a small description of the computed variables, and 1 figure showing the instrument used
description: Wave parameters obtained from RBR Duet in Cies Sur from October 2021 to January 2022 under the framework of the STRAUSS project in order to evaluate the effects of ocean waves in selected biological case studies of the Rías Baixas Upwelling System
DOI: 10.20350/digitalcsic/15146
title: Los tweets de @bibliotecasCSIC en 2022

description: Los datos se extrajeron de Twitter Analytics al finalizar cada mes del 2022. Se descargaron los ficheros con los datos por meses en csv y se compilaron en un fichero Excel con 12 hojas.
description: Documento que contiene los tweets publicados en 2022.
DOI: 10.20350/digitalcsic/15143
title: Los tweets de @DigitalCSIC en 2022

description: Los datos se extrajeron de Twitter Analytics al finalizar cada mes del 2022. Se descargaron los ficheros con los datos por meses en csv y se compilaron en un fichero Excel con 12 hojas.
description: Documento que contiene los tweets publicados por @DigitalCSIC en 2022.
DOI: 10.20350/digitalcsic/15141
title: Checklist of the Vascular Plants of Río Muni (Equatorial Guinea)

description: Dataset of the Checklist of the Vascular Plants of Río Muni (Equatorial Guinea)
description: An updated checklist of the vascular plants from the continental region of Equatorial Guinea, Río Muni is presented. The catalogue (Appendix 1) is the result of the compilation of identified herbarium specimens (6850), bibliographic references with species records (7985) and online databases (10109 GBIF records and 8897 RAINBIO records). A database of 23517 georeferenced vascular plant records was prepared by updating the nomenclatural and standardizing the locality names from all these sources. The catalogue comprises 2707 taxa (2598 species, 81 subspecies, and 28 varieties) included in 1020 genera and 178 families. About 90.6% of the taxa are considered native, 1.17% introduced and 5.96% naturalized. The 10 most diverse families are Rubiaceae (294 species), Fabaceae (290), Orchidaceae (168), Poaceae (105), Euphorbiaceae (87), Apocynaceae (85), Cyperaceae (79), Annonaceae (68), Acanthaceae (65 ) and Melastomataceae (61), which comprise 49.22% of the species in Río Muni. Only 11 species can be considered endemic to Río Muni; this low number reflects the absence of natural barriers in the territory. The number of threatened taxa (VU, EN and CR) is 134 (5.02% of the total evaluated), of which 43 are at risk of extinction, being within the categories of Endangered or Critically Endangered. Five species with restricted distribution to the Gulf of Guinea are considered threatened: three Endangered (Grossera angustifolia, Polyscias aequatoguineensis and Rhipidoglossum montealenense), and two Critically Endangered (Asplenium carvalhoanum and Macropodiella uoroensis), thus they should be considered as priority in management plans development and conservation strategies.
DOI: 10.20350/digitalcsic/15142
title: Localities of Río Muni with geographic coordinates

description: Dataset of the Localities of Río Muni with geographic coordinates
description: An updated checklist of the vascular plants from the continental region of Equatorial Guinea, Río Muni is presented. The catalogue (Appendix 1) is the result of the compilation of identified herbarium specimens (6850), bibliographic references with species records (7985) and online databases (10109 GBIF records and 8897 RAINBIO records). A database of 23517 georeferenced vascular plant records was prepared by updating the nomenclatural and standardizing the locality names from all these sources. The catalogue comprises 2707 taxa (2598 species, 81 subspecies, and 28 varieties) included in 1020 genera and 178 families. About 90.6% of the taxa are considered native, 1.17% introduced and 5.96% naturalized. The 10 most diverse families are Rubiaceae (294 species), Fabaceae (290), Orchidaceae (168), Poaceae (105), Euphorbiaceae (87), Apocynaceae (85), Cyperaceae (79), Annonaceae (68), Acanthaceae (65 ) and Melastomataceae (61), which comprise 49.22% of the species in Río Muni. Only 11 species can be considered endemic to Río Muni; this low number reflects the absence of natural barriers in the territory. The number of threatened taxa (VU, EN and CR) is 134 (5.02% of the total evaluated), of which 43 are at risk of extinction, being within the categories of Endangered or Critically Endangered. Five species with restricted distribution to the Gulf of Guinea are considered threatened: three Endangered (Grossera angustifolia, Polyscias aequatoguineensis and Rhipidoglossum montealenense), and two Critically Endangered (Asplenium carvalhoanum and Macropodiella uoroensis), thus they should be considered as priority in management plans development and conservation strategies.
DOI: 10.20350/digitalcsic/15140
title: Relationship between telomere length and early glutathione levels in the erythrocytes of zebra finches

description: Telomeres are repetitive DNA sequences at the end of chromosomes that protect them from degradation. They have been the focus of intense research because short telomeres would predict accelerated ageing and reduced longevity in vertebrates. Oxidative stress is considered a physiological driver of the telomere shortening and, consequently, short lifespan. Among molecules fighting against oxidative stress, glutathione is involved in many antioxidant pathways. Literature supports that oxidative stress may trigger a compensatory “hormetic” response increasing glutathione levels and telomere length. Here we tested the link between total glutathione concentration and telomere length in captive birds (zebra finches; Taeniopygia guttata). Total glutathione levels were experimentally decreased during birds’ growth using a specific inhibitor of glutathione synthesis (buthionine sulfoximine; BSO). We monitored the birds’ reproductive performance in an outdoor aviary during the first months of life and their almost nine-year longevity. We predicted that if glutathione protects telomeres from oxidative stress-induced telomere attrition, a positive correlation between telomere length and glutathione concentration in erythrocytes of control individuals should emerge. Similarly, we predicted that since BSO-treated zebra finches endured higher oxidative stress than controls, they should have also developed shorter telomeres in their erythrocytes and reduced longevity and reproductive outcomes. The current dataset allows testing these predictions.
DOI: 10.20350/digitalcsic/15136
title: MOPREDAScentury: a long-term monthly precipitation grid for the Spanish mainland

description: [EN] A gridded data set on monthly precipitation over mainland Spain between December 1915 and December 2020. The dataset combines ground observations from the National Climate Data Bank (NCDB) of the Spanish national climate and weather service (AEMET) and new data rescued from meteorological yearbooks published prior to 1951 that was never incorporated into the NCDB. The yearbooks data represented a significant improvement of the dataset, as it almost doubled the number of weather stations available during the first decades of the 20th century, the period when the dataset was more scarce. The final dataset contains records from 11,312 stations. Spatial interpolation was performed using geostatistical techniques over a regular 10x10 km grid, using a two-stage process: estimation of the probability of zero-precipitation (dry month), and estimation of precipitation magnitude.
description: [ES] Conjunto de datos en rejilla de precipitación mensual en la España peninsular, entre diciembre de 1915 y diciembre de 2020. El conjunto de datos utilizado combina observaciones del Banco Nacional de Datos de AEMET y nuevos datos rescatados de los anuarios climáticos publicados con anterioridad a 1951, y que casi duplican la información existente sobre la primera mitad del siglo 20. El conjunto final contiene información de un total de 11.312 observatorios. Se utilizaron técnicas geoestadísticas para interpolar espacialmente las observaciones sobre una rejilla regular de 10x10 km, utilizando un proceso en dos pasos: en primer lugar se interpoló la probabilidad de mes seco (precipitación igual a cero), y en un segundo paso la magnitud de la precipitación.
DOI: 10.20350/digitalcsic/15137
title: Mycorrhizal types associated with Mediterranean woody plant species across the Andalusian Red Natura 2000

description: [Description of methods used for collection/generation of data] We use available information from mycorrhizal databases to assign mycorrhizal type and status to our sampled plant species. Two databases were reviewed, Bueno et al. (2017) and FungalRoot (2020). Bueno et al. has info at the species level, while FungalRoot has multiple observations per species. For this reason, a species was assigned to a particular mycorrhizal type, whether the number of observations was equal or higher than 70 %, otherwise we assigned multiple associations. In the case of species that did not match with both databases, mycorrhizal type was assigned based on information at the genus, tribe or family level. Once each species was classified to a particular mycorrhizal type, we followed to assign their status. References: - Soudzilovskaia, N. A., Vaessen, S., Barcelo, M., He, J., Rahimlou, S., Abarenkov, K., ... & Tedersoo, L. (2020). FungalRoot: global online database of plant mycorrhizal associations. New Phytologist, 227(3), 955-966. - Bueno, C. G., Moora, M., Gerz, M., Davison, J., Öpik, M., Pärtel, M., ... & Zobel, M. (2017). Plant mycorrhizal status, but not type, shifts with latitude and elevation in Europe. Global Ecology and Biogeography, 26(6), 690-699.
description: Our aim was to register and characterize, throughout bibliographic review of published databases, the mycorrhizal type (AM, ECM, ERM, NM, AM+NM, ECM+NM,ERM+NM, ECM+AM+NM) and status (OM, FM, NM) of Mediterranean woody plant species sampled across the Andalusian Red Natura 2000. Here, we included a total of 211 plant species sampled across 32 plant communities from 16 protected areas distributed within the Andalusian RedNatura 2000.
description: Mediterranean_woody_plants_mycorrhizal_type-status.csv [shows the list of woody plant species sampled across the Andalusian Red Natura 2000 with their respective assignment of mycorrhizal type and status based on 'Mycorrhizal_type_Bueno.csv' and 'Mycorrhizal_type_FungalRoot.csv'] Mycorrhizal_type_Bueno.csv [has proccessed information about plant species mycorrhizal type from Bueno et al. (2017)] Mycorrhizal_type_FungalRoot.csv [has proccessed information about plant species mycorrhizal type from FungalRoot (2020)] Plant_taxonomic_info.csv [shows the list of woody plant species with their taxonomic adscription Class/Order/Family/Genus] Plant_community_info.csv [has information about sampled plant communities] Metadata.csv [records information about the meaning of columns in 'Mediterranean_woody_plants_mycorrhizal_type-status.csv', 'Mycorrhizal_type_Bueno.csv', 'Mycorrhizal_type_FungalRoot.csv', 'Plant_taxonomic_info.csv', and 'Plant_community_info.csv ' files]
DOI: 10.20350/digitalcsic/15135
title: Phylogenomics sheds new light on the drivers behind a long-lasting systematic riddle: the figwort family Scrophulariaceae

description: The figwort family, Scrophulariaceae, comprises c. 1800 species whose evolutionary relationships at the tribal level have proven difficult to resolve, hindering our ability to understand their origin and diversification. We designed a specific probe kit for Scrophulariaceae, targeting 849 nuclear loci and obtaining plastid regions as by-products. We sampled c. 80% of the genera described in the family and use the nuclear dataset to estimate evolutionary relationships, timing of diversification and biogeographic patterns. Ten tribes, including two new tribes, Androyeae and Camptolomeae, are supported and the phylogenetic positions of Androya, Camptoloma and Phygelius are unveiled. Our study reveals a major diversification at c. 60 Ma in the Paleogene, where two different lineages diversified, one of which gave rise to nearly 81% of extant species. A southern African origin is estimated for most modern-day tribes, with two exceptions, the American Leucophylleae and the mainly Australian Myoporeae. The rapid mid-Eocene diversification is aligned with geographic expansion in Africa in most tribes, from southern to tropical Africa, followed by multiple dispersals out-of-Africa. Our robust phylogeny provides a framework for future studies aimed at understanding the role of macroevolutionary patterns and processes that generated Scrophulariaceae diversity.