cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.u4xruv
title: Occurrence Download

description: A dataset containing 1923 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Occurrence evidence, Human Observation, Material sample)",
 "TaxonKey is Rhynchophorus palmarum (C.Linnaeus, 1758)"
 ]
}

 The dataset includes 1923 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014360-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4yz7at
title: Occurrence Download

description: A dataset containing 1348 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Gossypium hirsutum L."
 ]
}

 The dataset includes 1348 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014362-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4hussy
title: Occurrence Download

description: A dataset containing 4083 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Chrysophyllum gonocarpum (Mart. & Eichler) Engl., Chloroluma gonocarpa (Mart. & Eichler) Baill. ex Aubrév., Chrysophyllum cearaenses Allemão, Chrysophyllum cysneiri Allemão, Chrysophyllum lucumifolium Griseb., Chrysophyllum nemoralis Rojas Acosta, Chrysophyllum obtusifolium Allemão, Chrysophyllum persicastrum Eichler, Martiusella gonocarpa (Mart. & Eichler) Pierre, Pouteria boliviana (Rusby) Baehni, Sapota gonocarpa Mart. & Eichler ex Miq., Sideroxylon bolivianum Rusby)"
 ]
}

 The dataset includes 4083 records from 180 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014361-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vtwvay
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Achillea thracica Velen."
 ]
}

 The dataset includes 58 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014364-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.55uhwf
title: Occurrence Download

description: A dataset containing 1086 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Pouteria bilocularis (H.J.P.Winkl.) Baehni, Labatia bilocularis H.J.P.Winkl., Pseudocladia neblinaensis Aubrév.)"
 ]
}

 The dataset includes 1086 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014365-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ejxja
title: Occurrence Download

description: A dataset containing 304 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Pouteria engleri Eyma, Nemaluma engleri (Eyma) Aubrév. & Pellegr.)"
 ]
}

 The dataset includes 304 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014366-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q3b5qy
title: Occurrence Download

description: A dataset containing 239333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melilotus albus Medik."
 ]
}

 The dataset includes 239333 records from 2141 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014358-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fz4wjy
title: Occurrence Download

description: A dataset containing 1810 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vachellia xanthophloea"
 ]
}

 The dataset includes 1810 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046296-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17479421
title: Transient Occupancy and Pore Dynamics: IP6 behavior in HIV-1 T=4 Capsids

description: This dataset contains input and output files from molecular dynamics (MD) simulations of the T4 system and its variants: wild type (WT), WT complexed with inositol hexakisphosphate (IP6), and the R18L mutant. Each system directory includes initial coordinate and topology files (inside input_structures folder), CHARMM parameters (topdir), NAMD config files (prod_run),  production trajectories (250 ns - trimmed without water and ions) and PDB files for visualization in the trajectory folders.

All simulations were performed using NAMD 2.14 with the CHARMM36m force field in explicit TIP3P water with 0.15 M NaCl under NPT ensemble conditions at 310 K and 1 atm. A 2 fs integration step was used, and each trajectory represents a 250 ns production run.

 The files are directly compatible with VMD, facilitating visualization, trajectory analysis, or further simulation.
DOI: 10.5281/zenodo.17870475
title: Transient Occupancy and Pore Dynamics: IP6 behavior in HIV-1 T=4 Capsids

description: This dataset contains input and output files from molecular dynamics (MD) simulations of the T4 system and its variants: wild type (WT), WT complexed with inositol hexakisphosphate (IP6), and the R18L mutant. Each system directory includes initial coordinate and topology files (inside input_structures folder), CHARMM parameters (topdir), NAMD config files (prod_run),  production trajectories (250 ns - trimmed without water and ions) and PDB files for visualization in the trajectory folders.

All simulations were performed using NAMD 2.14 with the CHARMM36m force field in explicit TIP3P water with 0.15 M NaCl under NPT ensemble conditions at 310 K and 1 atm. A 2 fs integration step was used, and each trajectory represents a 250 ns production run.

 The files are directly compatible with VMD, facilitating visualization, trajectory analysis, or further simulation.
DOI: 10.6084/m9.figshare.30855953
title: <b>Dataset for a Systematic Review of Eco-Pesantren Practices in Indonesia (Collected in June and August 2025)</b>

description: This is a dataset for a systematic review of eco-pesantren environmental practices in Indonesia in relation to the SDGs. Comprehensive search was conducted in June, 2025 across four academic databases: Scopus, Web of Science, Dimensions, and OpenAlex. A manual search was also conducted throughout the review process in August 12, 2025, to identify newly published or relevant studies not yet indexed in these databases after the June search. These sources were selected to cover peer-reviewed journal articles, conference proceedings, book chapters, and theses published in both international and Indonesian contexts. While no publication year filter was applied during the initial search phase, the final screening process resulted in the inclusion of studies published between 2012 and 2025.
DOI: 10.6084/m9.figshare.30855953.v1
title: <b>Dataset for a Systematic Review of Eco-Pesantren Practices in Indonesia (Collected in June and August 2025)</b>

description: This is a dataset for a systematic review of eco-pesantren environmental practices in Indonesia in relation to the SDGs. Comprehensive search was conducted in June, 2025 across four academic databases: Scopus, Web of Science, Dimensions, and OpenAlex. A manual search was also conducted throughout the review process in August 12, 2025, to identify newly published or relevant studies not yet indexed in these databases after the June search. These sources were selected to cover peer-reviewed journal articles, conference proceedings, book chapters, and theses published in both international and Indonesian contexts. While no publication year filter was applied during the initial search phase, the final screening process resulted in the inclusion of studies published between 2012 and 2025.
DOI: 10.13140/rg.2.2.18924.63364
title: Add-in file for moving an SRSPM in space.
DOI: 10.15468/dl.4wrzub
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galathealinum brachiosum",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046298-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11400051
title: Cognitive impairment and post-acute sequelae of COVID-19 in Indonesia: Prevalence, determinants, and vaccination history

description: We performed an observational study among people who underwent COVID-19 diagnostic tests in a hospital in Indonesia. They were randomly selected and visited by our interviewers. The survey was conducted in the province of D.I. Yogyakarta. As of January 24, 2023, Yogyakarta had 100% vaccination coverage for the first dose and 41.26% for the second and third doses (https://vaksin.kemkes.go.id/#/provinces). A tertiary public hospital with high-volume severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) test facilities in this province was selected as the population frame for the study. This study began in April 2023, and post-COVID-19 conditions (PCCs) were projected to appear between 6 and 18 months after the diagnosis of COVID-19. Therefore, a 1-year timeframe between November 2021 and November 2022 was chosen for the study period.

Eligible participants were adults aged ≥18 years who underwent COVID-19 diagnostic tests in hospitals. People with positive outcomes in this study were those who tested positive of COVID-19 with reverse transcription‐polymerase chain reaction using nasopharyngeal swab. The exclusion criteria were dementia or other cognitive declines before the diagnostic test, hearing disability, missing contact information, an unwillingness to participate, or the need for assisted ventilation.

Participants were required to complete an informed consent form prior to the interview. Individual interviews were conducted using a structured questionnaire written in Indonesian, with responses being recorded in paper format. We recorded the name of the interviewer for each participant to correct potential information leakage by statistical analysis, as this could interfere their assessments during interview. Data recorded between November 30, 2021 and December 1, 2023 in the hospital were also collected.

Note: A few input error exists in the datasets. For our study, we corrected the input in our analyses. We shared the programming codes for all analyses in this study (https://github.com/herdiantrisufriyana/colab_locovyog). The preprint article was also shared in this repository. Please kindly review the preprint article and the analytical codes before dealing with these datasets.
DOI: 10.5281/zenodo.11400052
title: Cognitive impairment and post-acute sequelae of COVID-19 in Indonesia: Prevalence, determinants, and vaccination history

description: We performed an observational study among people who underwent COVID-19 diagnostic tests in a hospital in Indonesia. They were randomly selected and visited by our interviewers. The survey was conducted in the province of D.I. Yogyakarta. As of January 24, 2023, Yogyakarta had 100% vaccination coverage for the first dose and 41.26% for the second and third doses (https://vaksin.kemkes.go.id/#/provinces). A tertiary public hospital with high-volume severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) test facilities in this province was selected as the population frame for the study. This study began in April 2023, and post-COVID-19 conditions (PCCs) were projected to appear between 6 and 18 months after the diagnosis of COVID-19. Therefore, a 1-year timeframe between November 2021 and November 2022 was chosen for the study period.

Eligible participants were adults aged ≥18 years who underwent COVID-19 diagnostic tests in hospitals. People with positive outcomes in this study were those who tested positive of COVID-19 with reverse transcription‐polymerase chain reaction using nasopharyngeal swab. The exclusion criteria were dementia or other cognitive declines before the diagnostic test, hearing disability, missing contact information, an unwillingness to participate, or the need for assisted ventilation.

Participants were required to complete an informed consent form prior to the interview. Individual interviews were conducted using a structured questionnaire written in Indonesian, with responses being recorded in paper format. We recorded the name of the interviewer for each participant to correct potential information leakage by statistical analysis, as this could interfere their assessments during interview. Data recorded between November 30, 2021 and December 1, 2023 in the hospital were also collected.

Note: A few input error exists in the datasets. For our study, we corrected the input in our analyses. We shared the programming codes for all analyses in this study (https://github.com/herdiantrisufriyana/colab_locovyog). The preprint article was also shared in this repository. Please kindly review the preprint article and the analytical codes before dealing with these datasets.
DOI: 10.15468/dl.4abkrh
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galathealinum bruuni",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046299-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gx96u8
title: Occurrence Download

description: A dataset containing 696418 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Bhutan",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 696418 records from 230 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046286-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nybct7
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heptabrachia abyssicola",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046300-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2nyjfe
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heptabrachia beringensis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046301-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8hz78g
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heptabrachia ctenophora",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046302-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hvj4ud
title: Occurrence Download

description: A dataset containing 700177 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-10-15",
 "EventDate is less than or equal to 2025-11-14",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 },
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 700177 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046297-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25909/30747617.v2
title: Dark Agouti tumor data

description: Tumor charcterisation data for dark agouti mammary adenocarcinoma
DOI: 10.34740/kaggle/dsv/14101840
title: Daily Market Prices of Commodity India (2001-2025)
DOI: 10.15468/dl.nmfv2n
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heptabrachia gracilis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046303-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17890115
title: APIMatchmaker Matching the Right APIs for Supporting the Development of Android Apps 2023
DOI: 10.5281/zenodo.17890116
title: APIMatchmaker Matching the Right APIs for Supporting the Development of Android Apps 2023
DOI: 10.6084/m9.figshare.30856076
title: Fungal-Derived Magnetic Biochar with Fe–O Coordination for Efficient and Sustainable Removal of 6PPD-Quinone

description: 这项工作展示了<i>P. chrysosporium</i>为具有增强亲和力的磁性生物炭的路径，这是一种持续存在的轮胎衍生污染物，全球关注日益严重。基于铁的活性中心与分层多孔碳网络的协同整合，产生了丰富的吸附界面，实现π-π堆叠、Fe-O配位和孔隙填充，共同调控强且稳定的吸附行为。磁性功能促进快速分离和重复使用，而生物来源确保了环境兼容性和材料的可持续性。重要的是，受控吸附研究澄清了6PPD-Q与功能化碳表面之间的内在相互作用，提供了将该策略推广到更复杂自然基质的关键机制见解。本研究展示了如何将真菌资源工程化成可回收吸附剂，结合选择性、可扩展性和环境安全，为减少水生生态系统中轮胎衍生芳香污染物提供了绿色材料范式。
DOI: 10.6084/m9.figshare.30856076.v1
title: Fungal-Derived Magnetic Biochar with Fe–O Coordination for Efficient and Sustainable Removal of 6PPD-Quinone

description: 这项工作展示了<i>P. chrysosporium</i>为具有增强亲和力的磁性生物炭的路径，这是一种持续存在的轮胎衍生污染物，全球关注日益严重。基于铁的活性中心与分层多孔碳网络的协同整合，产生了丰富的吸附界面，实现π-π堆叠、Fe-O配位和孔隙填充，共同调控强且稳定的吸附行为。磁性功能促进快速分离和重复使用，而生物来源确保了环境兼容性和材料的可持续性。重要的是，受控吸附研究澄清了6PPD-Q与功能化碳表面之间的内在相互作用，提供了将该策略推广到更复杂自然基质的关键机制见解。本研究展示了如何将真菌资源工程化成可回收吸附剂，结合选择性、可扩展性和环境安全，为减少水生生态系统中轮胎衍生芳香污染物提供了绿色材料范式。
DOI: 10.15468/dl.uhwu8r
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heptabrachia subtilis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046306-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r7nw38
title: Occurrence Download

description: A dataset containing 1472 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Harmonia axyridis",
 "Year 2005-2024"
 ]
}

 The dataset includes 1472 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046307-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30850559
title: MSR 2026 Replication Package

description: This replication package contains the primary dataset, the labelled data with labeling guidelines and readme files that were sent to the participants, the labeling script (.ipynb), and the maintainability results.<br>Files:1. Data-set.csv — This is the main dataset that was used for model training2. Labelling.zip — This is a zipped file containing all individual sets of datasets sent to the manual evaluators. Each of these datasets contains code files to evaluate, a guideline, a readme, and a civ file to store the evaluation results.3. Labelling.ipynb — This is the script file for leveling.4. multiclass_maintainability_results.csv — This file contains the results.5. Subset.csv -- This file contains the subset of the dataset that represents the entire dataset. This is used for handing over to the human developers for manual annotation
DOI: 10.6084/m9.figshare.30850559.v1
title: MSR 2026 Replication Package

description: This replication package contains the primary dataset, the labelled data with labeling guidelines and readme files that were sent to the participants, the labeling script (.ipynb), and the maintainability results.<br>Files:1. Data-set.csv — This is the main dataset that was used for model training2. Labelling.zip — This is a zipped file containing all individual sets of datasets sent to the manual evaluators. Each of these datasets contains code files to evaluate, a guideline, a readme, and a civ file to store the evaluation results.3. Labelling.ipynb — This is the script file for leveling.4. multiclass_maintainability_results.csv — This file contains the results.5. Subset.csv -- This file contains the subset of the dataset that represents the entire dataset. This is used for handing over to the human developers for manual annotation
DOI: 10.15468/dl.f3kh7w
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heptabrachia talboti",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046308-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cqzbbc
title: Occurrence Download

description: A dataset containing 901 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Serrognathus titanus",
 "Year 2005-2024"
 ]
}

 The dataset includes 901 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046309-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.