cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11109627
title: Computational Strategies for Designing Bidentate Hypervalent Iodine Catalysts in Halogen Bond-Mediated Organocatalysis

description: Computational Strategies for Designing Bidentate Hypervalent Iodine Catalysts in Halogen Bond-Mediated Organocatalysis

Email: cristina.trujillodelvalle@manchester.ac.uk

 

Please find the supporting information for the "Computational Strategies for Designing Bidentate Hypervalent Iodine Catalysts in Halogen Bond-Mediated Organocatalysis" paper here.
DOI: 10.5281/zenodo.11110151
title: Computational Strategies for Designing Bidentate Hypervalent Iodine Catalysts in Halogen Bond-Mediated Organocatalysis

description: Computational Strategies for Designing Bidentate Hypervalent Iodine Catalysts in Halogen Bond-Mediated Organocatalysis

Email: cristina.trujillodelvalle@manchester.ac.uk

 

Please find the supporting information for the "Computational Strategies for Designing Bidentate Hypervalent Iodine Catalysts in Halogen Bond-Mediated Organocatalysis" paper here.
DOI: 10.5281/zenodo.11097065
title: Computational Strategies for Designing Bidentate Hypervalent Iodine Catalysts in Halogen Bond-Mediated Organocatalysis

description: Computational Strategies for Designing Bidentate Hypervalent Iodine Catalysts in Halogen Bond-Mediated Organocatalysis

Email: cristina.trujillodelvalle@manchester.ac.uk

 

Please find the supporting information for the "Computational Strategies for Designing Bidentate Hypervalent Iodine Catalysts in Halogen Bond-Mediated Organocatalysis" paper here.
DOI: 10.5281/zenodo.11103931
title: Computational Strategies for Designing Bidentate Hypervalent Iodine Catalysts in Halogen Bond-Mediated Organocatalysis

description: Computational Strategies for Designing Bidentate Hypervalent Iodine Catalysts in Halogen Bond-Mediated Organocatalysis

Email: cristina.trujillodelvalle@manchester.ac.uk

 

Please find the supporting information for the "Computational Strategies for Designing Bidentate Hypervalent Iodine Catalysts in Halogen Bond-Mediated Organocatalysis" paper here.
DOI: 10.6084/m9.figshare.26202377
title: PONE-D-24-03328R1 - [EMID627d39742b54b9fe] Supporting Information Data Set

description: Supporting Information Data Set for PONE-D-24-03328R1 - [EMID627d39742b54b9fe]
DOI: 10.6084/m9.figshare.26202377.v1
title: PONE-D-24-03328R1 - [EMID627d39742b54b9fe] supporting information

description: Supporting information for PONE-D-24-03328R1 - [EMID627d39742b54b9fe]
DOI: 10.15468/dl.df9pjq
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Orcinus orca (Linnaeus, 1758)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 56 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016432-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g55abs
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "GadmGid is CHN.19_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Quercus mongolica Fisch. ex Ledeb."
 ]
}

 The dataset includes 54 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016433-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q82xav
title: Occurrence Download

description: A dataset containing 5583 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Abax parallelus (Duftschmid, 1812)"
 ]
}

 The dataset includes 5583 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016434-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2vv8w5
title: Occurrence Download

description: A dataset containing 147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Takifugu snyderi (Abe, 1988)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 147 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016435-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12663810
title: GS2 gyrokinetic simulation data for manuscript "Turbulent thermal equilibration of collisionless magnetospheric plasmas"

description: A nonlinear simulation dataset produced by the gyrokinetic simulation code GS2 for the entropy mode driven turbulence in the Z pinch configuration. It includes



Raw simulation data containing the electrostatic potential and density profiles, time series of the particle fluxes and energy-exchange between species, and snapshots of distribution functions.

Figures of distribution functions, potential and density profiles.

Some Python scripts to analyze the data.
DOI: 10.48544/399cc64e-e462-482e-97a5-53a80a1b634d
title: Topical advertising: the role of timing and creativity in understanding its effectiveness
DOI: 10.15468/dl.exmph8
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Buccinum isaotakii Kira, 1959",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 76 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016436-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26199389
title: Perfect-model_approach_hindcasts_spatial_mean

description: The impact of assimilating the cloud liquid water mixing ratio (<i>q</i><sub><em>c</em></sub>) and other hydrometeor variables on short-term forecasts of downward surface shortwave radiation (DSSR) is evaluated. A perfect-model approach is used to directly verify the nudging scheme of the hydrometeor variables and its subsequent effect. The 4-bit binary data file describes the name of the variable, type of error (either the bias or the RMSE) and the simulation. An instantaneous hourly data starts at 2017/01/01/01:00 and ends at 2017/12/31/24:00, and if "_13oclock" is included in the name, only the data at 13:00 (JST) is used.
DOI: 10.6084/m9.figshare.26199389.v1
title: Perfect-model_approach_hindcasts_spatial_mean

description: The impact of assimilating the cloud liquid water mixing ratio (<i>q</i><sub><em>c</em></sub>) and other hydrometeor variables on short-term forecasts of downward surface shortwave radiation (DSSR) is evaluated. A perfect-model approach is used to directly verify the nudging scheme of the hydrometeor variables and its subsequent effect. The 4-bit binary data file describes the name of the variable, type of error (either the bias or the RMSE) and the simulation. An instantaneous hourly data starts at 2017/01/01/01:00 and ends at 2017/12/31/24:00, and if "_13oclock" is included in the name, only the data at 13:00 (JST) is used.
DOI: 10.6084/m9.figshare.26199173
title: Perfect-model_approach_mean_bias_13oclock

description: The impact of assimilating the cloud liquid water mixing ratio (<i>q</i><sub><em>c</em></sub>) and other hydrometeor variables on short-term forecasts of downward surface shortwave radiation (DSSR) is evaluated. A perfect-model approach is used to directly verify the nudging scheme of the hydrometeor variables and its subsequent effect. The 4-bit binary data file describes the name of the variable, type of error (either the bias or the RMSE) and the simulation. An instantaneous hourly data starts at 2017/01/01/01:00 and ends at 2017/12/31/24:00, and if "_13oclock" is included in the name, only the data at 13:00 (JST) is used.
DOI: 10.15468/dl.csh68w
title: Occurrence Download

description: A dataset containing 453 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Acupalpus brunnipes (Sturm, 1825)"
 ]
}

 The dataset includes 453 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016437-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26199173.v1
title: Perfect-model_approach_mean_bias_13oclock

description: The impact of assimilating the cloud liquid water mixing ratio (<i>q</i><sub><em>c</em></sub>) and other hydrometeor variables on short-term forecasts of downward surface shortwave radiation (DSSR) is evaluated. A perfect-model approach is used to directly verify the nudging scheme of the hydrometeor variables and its subsequent effect. The 4-bit binary data file describes the name of the variable, type of error (either the bias or the RMSE) and the simulation. An instantaneous hourly data starts at 2017/01/01/01:00 and ends at 2017/12/31/24:00, and if "_13oclock" is included in the name, only the data at 13:00 (JST) is used.
DOI: 10.15468/dl.5cwv49
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "GadmGid is CHN.19_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lonicera tatarica L."
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016438-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26199053
title: Perfect-model_approach_mean_bias_hourly

description: The impact of assimilating the cloud liquid water mixing ratio (<i>q</i><sub><em>c</em></sub>) and other hydrometeor variables on short-term forecasts of downward surface shortwave radiation (DSSR) is evaluated. A perfect-model approach is used to directly verify the nudging scheme of the hydrometeor variables and its subsequent effect. The 4-bit binary data file describes the name of the variable, type of error (either the bias or the RMSE) and the simulation. An instantaneous hourly data starts at 2017/01/01/01:00 and ends at 2017/12/31/24:00, and if "_13oclock" is included in the name, only the data at 13:00 (JST) is used.
DOI: 10.6084/m9.figshare.26199053.v1
title: Perfect-model_approach_mean_bias_hourly

description: The impact of assimilating the cloud liquid water mixing ratio (<i>q</i><sub><em>c</em></sub>) and other hydrometeor variables on short-term forecasts of downward surface shortwave radiation (DSSR) is evaluated. A perfect-model approach is used to directly verify the nudging scheme of the hydrometeor variables and its subsequent effect. The 4-bit binary data file describes the name of the variable, type of error (either the bias or the RMSE) and the simulation. An instantaneous hourly data starts at 2017/01/01/01:00 and ends at 2017/12/31/24:00, and if "_13oclock" is included in the name, only the data at 13:00 (JST) is used.
DOI: 10.15468/dl.dsybnq
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pasiphaea japonica Omori, 1976",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 32 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016439-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26199044
title: Perfect-model_approach_RMSEs_at_13oclock

description: The impact of assimilating the cloud liquid water mixing ratio (<i>q</i><sub><em>c</em></sub>) and other hydrometeor variables on short-term forecasts of downward surface shortwave radiation (DSSR) is evaluated. A perfect-model approach is used to directly verify the nudging scheme of the hydrometeor variables and its subsequent effect. The 4-bit binary data file describes the name of the variable, type of error (either the bias or the RMSE) and the simulation. An instantaneous hourly data starts at 2017/01/01/01:00 and ends at 2017/12/31/24:00, and if "_13oclock" is included in the name, only the data at 13:00 (JST) is used.
DOI: 10.6084/m9.figshare.26199044.v1
title: Perfect-model_approach_RMSEs_at_13oclock

description: The impact of assimilating the cloud liquid water mixing ratio (<i>q</i><sub><em>c</em></sub>) and other hydrometeor variables on short-term forecasts of downward surface shortwave radiation (DSSR) is evaluated. A perfect-model approach is used to directly verify the nudging scheme of the hydrometeor variables and its subsequent effect. The 4-bit binary data file describes the name of the variable, type of error (either the bias or the RMSE) and the simulation. An instantaneous hourly data starts at 2017/01/01/01:00 and ends at 2017/12/31/24:00, and if "_13oclock" is included in the name, only the data at 13:00 (JST) is used.
DOI: 10.15468/dl.3g4pdf
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.19_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Viola sacchalinensis H.Boissieu"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016440-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h2z4xm
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.19_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Gnaphalium uliginosum L."
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016441-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j93q6p
title: Occurrence Download

description: A dataset containing 265 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Acupalpus elegans (Dejean, 1829)"
 ]
}

 The dataset includes 265 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016442-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kmjm5a
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sepiella japonica Sasaki, 1929",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016443-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26199026
title: Perfect-model_approach_RMSEs_hourly_analyses

description: The impact of assimilating the cloud liquid water mixing ratio (<i>q</i><sub><em>c</em></sub>) and other hydrometeor variables on short-term forecasts of downward surface shortwave radiation (DSSR) is evaluated. A perfect-model approach is used to directly verify the nudging scheme of the hydrometeor variables and its subsequent effect. The 4-bit binary data file describes the name of the variable, type of error (either the bias or the RMSE) and the simulation. An instantaneous hourly data starts at 2017/01/01/01:00 and ends at 2017/12/31/24:00, and if "_13oclock" is included in the name, only the data at 13:00 (JST) is used.
DOI: 10.6084/m9.figshare.26199026.v1
title: Perfect-model_approach_RMSEs_hourly_analyses

description: The impact of assimilating the cloud liquid water mixing ratio (<i>q</i><sub><em>c</em></sub>) and other hydrometeor variables on short-term forecasts of downward surface shortwave radiation (DSSR) is evaluated. A perfect-model approach is used to directly verify the nudging scheme of the hydrometeor variables and its subsequent effect. The 4-bit binary data file describes the name of the variable, type of error (either the bias or the RMSE) and the simulation. An instantaneous hourly data starts at 2017/01/01/01:00 and ends at 2017/12/31/24:00, and if "_13oclock" is included in the name, only the data at 13:00 (JST) is used.
DOI: 10.5281/zenodo.11147847
title: A fluid-walled microfluidic platform for human neuron microcircuits and directed axotomy

description: ABSTRACT



In our brains, different neurons make appropriate connections; however, there remain few in vitro models of such circuits. We use an open microfluidic approach to build and study neuronal circuits in vitro in ways that fit easily into existing bio-medical workflows. Dumbbell-shaped circuits are built in minutes in standard Petri dishes; the aqueous phase is confined by fluid walls – interfaces between cell-growth medium and an immiscible fluorocarbon, FC40. Conditions are established that ensure post-mitotic neurons derived from human induced pluripotent stem cells (iPSCs) plated in one chamber of a dumbbell remain where deposited. After seeding cortical neurons on one side, axons grow through the connecting conduit to ramify amongst striatal neurons on the other – an arrangement mimicking unidirectional cortico-striatal connectivity. We also develop a moderate-throughput non-contact axotomy assay. Cortical axons in conduits are severed by a media jet; then, brain-derived neurotrophic factor and striatal neurons in distal chambers promote axon regeneration. As additional conduits and chambers are easily added, this opens up the possibility of mimicking complex neuronal networks, and screening drugs for their effects on connectivity.


FILE DESCRIPTIONS

Source Data.xlsx: Tabular datasets plotted on Main Figures 2, 3 and 6, and Supplementary Figure 1.

Key Resources Table.xlsx: Table containing key resources (primary and secondary antibodies, cell lines, code and software) used in this study.
DOI: 10.5281/zenodo.11176767
title: A fluid-walled microfluidic platform for human neuron microcircuits and directed axotomy

description: ABSTRACT



In our brains, different neurons make appropriate connections; however, there remain few in vitro models of such circuits. We use an open microfluidic approach to build and study neuronal circuits in vitro in ways that fit easily into existing bio-medical workflows. Dumbbell-shaped circuits are built in minutes in standard Petri dishes; the aqueous phase is confined by fluid walls – interfaces between cell-growth medium and an immiscible fluorocarbon, FC40. Conditions are established that ensure post-mitotic neurons derived from human induced pluripotent stem cells (iPSCs) plated in one chamber of a dumbbell remain where deposited. After seeding cortical neurons on one side, axons grow through the connecting conduit to ramify amongst striatal neurons on the other – an arrangement mimicking unidirectional cortico-striatal connectivity. We also develop a moderate-throughput non-contact axotomy assay. Cortical axons in conduits are severed by a media jet; then, brain-derived neurotrophic factor and striatal neurons in distal chambers promote axon regeneration. As additional conduits and chambers are easily added, this opens up the possibility of mimicking complex neuronal networks, and screening drugs for their effects on connectivity.

 


FILE DESCRIPTIONS

Source Data.xlsx: Tabular datasets plotted on Main Figures 2, 3 and 6, and Supplementary Figures 1 and 2.

Key Resources Table.xlsx: Table containing details on the key resources (antibodies, cell lines, virus strains, software, code, and protocols) used in this study.
DOI: 10.5281/zenodo.11472099
title: A fluid-walled microfluidic platform for human neuron microcircuits and directed axotomy

description: ABSTRACT



In our brains, different neurons make appropriate connections; however, there remain few in vitro models of such circuits. We use an open microfluidic approach to build and study neuronal circuits in vitro in ways that fit easily into existing bio-medical workflows. Dumbbell-shaped circuits are built in minutes in standard Petri dishes; the aqueous phase is confined by fluid walls – interfaces between cell-growth medium and an immiscible fluorocarbon, FC40. Conditions are established that ensure post-mitotic neurons derived from human induced pluripotent stem cells (iPSCs) plated in one chamber of a dumbbell remain where deposited. After seeding cortical neurons on one side, axons grow through the connecting conduit to ramify amongst striatal neurons on the other – an arrangement mimicking unidirectional cortico-striatal connectivity. We also develop a moderate-throughput non-contact axotomy assay. Cortical axons in conduits are severed by a media jet; then, brain-derived neurotrophic factor and striatal neurons in distal chambers promote axon regeneration. As additional conduits and chambers are easily added, this opens up the possibility of mimicking complex neuronal networks, and screening drugs for their effects on connectivity.

 


FILE DESCRIPTIONS

Source Data.xlsx: Tabular datasets plotted on Main Figures 2, 3 and 6, and Supplementary Figures 1 and 2.

Key Resources Table.xlsx: Table containing details on the key resources (antibodies, cell lines, virus strains, software, code, and protocols) used in this study.