cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15349870
title: Mozilla CORE issue report dataset

description: This dataset contains 522,355 bug reports from the CORE project of Mozilla. It has been updated to reflect the latest available data and is suitable for: software engineering research, applying mining software repositories techniques, bug prediction, classification, triage, and related studies on highly configurable systems.

 





Data Schema
Each bug report in the dataset include the following attributes:



- Identificative Information: Issue URL, ID, Alias, Summary, Description- Classification: Classification, Component, Product, Version, Platform, Op sys- Status: Status, Resolution, Severity, Priority, Target Milestone, Deadline, Is open, Is confirmed, Creation time, Last change time- People Involved: Creator, Creator Detail, Assigned to, Assigned to detail, CC, CC detail, Is CC accessible, QA contact- Relationships: Depends on, Dupe of, Blocks, See also- Activity log: History/Activity Log- Comments: Comments- Other: Groups, Flags, Whiteboard, Is creator accessible, Keywords, URL, Attachments


All the information about these attributes can be found at Bugzilla's API documentation

This dataset was obtained using the Issuex tool, available at Github: https://github.com/diverso-lab/Issuex
DOI: 10.5281/zenodo.14229871
title: Mozilla CORE issue report dataset

description: This dataset contains 522,355 bug reports from the CORE project of Mozilla. It has been updated to reflect the latest available data and is suitable for: software engineering research, applying mining software repositories techniques, bug prediction, classification, triage, and related studies on highly configurable systems.

 





Data Schema
Each bug report in the dataset include the following attributes:



- Identificative Information: Issue URL, ID, Alias, Summary, Description- Classification: Classification, Component, Product, Version, Platform, Op sys- Status: Status, Resolution, Severity, Priority, Target Milestone, Deadline, Is open, Is confirmed, Creation time, Last change time- People Involved: Creator, Creator Detail, Assigned to, Assigned to detail, CC, CC detail, Is CC accessible, QA contact- Relationships: Depends on, Dupe of, Blocks, See also- Activity log: History/Activity Log- Comments: Comments- Other: Groups, Flags, Whiteboard, Is creator accessible, Keywords, URL, Attachments


All the information about these attributes can be found at Bugzilla's API documentation

This dataset was obtained using the Issuex tool, available at Github: https://github.com/diverso-lab/Issuex
DOI: 10.15468/dl.vyqeeg
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Panicum miliaceum",
 "Country is Morocco",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033270-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tbhduh
title: Occurrence Download

description: A dataset containing 2717 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Panicum miliaceum",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2717 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033271-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29614013
title: Quotes from included studies for Patient and clinician perspectives on the management of obesity in kidney failure prior to kidney transplantation.

description: These are the quotes used to create the themes and sub-themes for the qualitative systematic review.
DOI: 10.6084/m9.figshare.29614013.v1
title: Quotes from included studies for Patient and clinician perspectives on the management of obesity in kidney failure prior to kidney transplantation.

description: These are the quotes used to create the themes and sub-themes for the qualitative systematic review.
DOI: 10.15468/dl.csrjyr
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pectis tenuifolia"
 ]
}

 The dataset includes 121 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033274-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j5hnw5
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pectis tenuifolia"
 ]
}

 The dataset includes 121 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033275-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16274176
title: Transcatheter Aortic Valve Replacement Planning Pseudo-label CT dataset (TAVRP-PL)

description: This dataset contains volumetric segmentation pseudo-labels of relevant anatomical structures for Transcatheter Aortic Valve Replacement (TAVR) Planning and their associated computed tomography scans.

It is based on the TotalSegmentator dataset [1], from which a subset of labels are used to serve as basis for deriving additional anatomical TAVR-relevant structures, namely:



Class 1: Aorta

Class 2: Aortic Root

Class 3: Valve

Class 4: Left Ventricle

Class 5: Annulus

Class 6: Iliac Artery Left

Class 7: Iliac Artery Right


This datasets contains a subset of 578 CT scans from the TotalSegmentator dataset and it is structured in train, validation and test splits, for training and evaluating segmentation models.

More information about this pseudo-label TAVR dataset can be found in an accompaying paper [2].

Details on the TotalSegmentator dataset, which we base our additional labels on can be found in their paper or dataset webpage.

[1] Jakob Wasserthal. (2023). Dataset with segmentations of 117 important anatomical structures in 1228 CT images (2.0.1) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.10047292

[2] Zöllner, C., Reiß, S., Jaus, A., Sholi, A., Sodian, R., and Stiefelhagen, R., “Semantic Segmentation for Preoperative Planning in Transcatheter Aortic Valve Replacement”, https://arxiv.org/abs/2507.16573
DOI: 10.5281/zenodo.16274177
title: Transcatheter Aortic Valve Replacement Planning Pseudo-label CT dataset (TAVRP-PL)

description: This dataset contains volumetric segmentation pseudo-labels of relevant anatomical structures for Transcatheter Aortic Valve Replacement (TAVR) Planning and their associated computed tomography scans.

It is based on the TotalSegmentator dataset [1], from which a subset of labels are used to serve as basis for deriving additional anatomical TAVR-relevant structures, namely:



Class 1: Aorta

Class 2: Aortic Root

Class 3: Valve

Class 4: Left Ventricle

Class 5: Annulus

Class 6: Iliac Artery Left

Class 7: Iliac Artery Right


This datasets contains a subset of 578 CT scans from the TotalSegmentator dataset and it is structured in train, validation and test splits, for training and evaluating segmentation models.

More information about this pseudo-label TAVR dataset can be found in an accompaying paper [2].

Details on the TotalSegmentator dataset, which we base our additional labels on can be found in their paper or dataset webpage.

[1] Jakob Wasserthal. (2023). Dataset with segmentations of 117 important anatomical structures in 1228 CT images (2.0.1) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.10047292

[2] Zöllner, C., Reiß, S., Jaus, A., Sholi, A., Sodian, R., and Stiefelhagen, R., “Semantic Segmentation for Preoperative Planning in Transcatheter Aortic Valve Replacement”, https://arxiv.org/abs/2507.16573
DOI: 10.15468/dl.66q5xe
title: Occurrence Download

description: A dataset listing the 11626 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Occurrence evidence)",
 "Country is Germany",
 "DatasetKey is one of (Floristic records from survey studies of the Bayerisches Landesamt für Umwelt, Occurrence Data of Vascular Plants collected or compiled for the Flora of Bavaria, Pl@ntNet automatically identified occurrences, VegetWeb - Repositorium von Vegetationsaufnahmen, IBF Monitoring of Vascular Plants, Pl@ntNet observations, Floristic Databases of Mecklenburg-Pomerania - Higher Plants, iNaturalist Research-grade Observations, Observation.org, Nature data from around the World)",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae",
 "Year 1900-2025"
 ]
}

 The dataset's 11626 records were derived from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033272-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zybwp5
title: Occurrence Download

description: A dataset containing 384 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera tetraptera",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 384 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033276-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cbz29m
title: Occurrence Download

description: A dataset containing 250 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Iris iberica"
 ]
}

 The dataset includes 250 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033277-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4jq4z4
title: Occurrence Download

description: A dataset containing 146790 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Adoxa moschatellina"
 ]
}

 The dataset includes 146790 records from 893 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033216-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rskg8v
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Panicum miliaceum",
 "Country is Portugal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 32 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033279-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d68exx
title: Occurrence Download

description: A dataset containing 4425 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Pakistan",
 "Geometry POLYGON((74 35.8,73.5 35,73 34.5,73.5 34,74.8 34,75.8 34.2,76.5 34.5,77.2 35.3,77 36,76 36.8,75 36.9,74 36.7,74 35.8))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ascomycota"
 ]
}

 The dataset includes 4425 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033278-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16359846
title: Table 1 in Revision of the Indo-Pacific species of the genus Leucosyrinx Dall, 1889 (Neogastropoda: Conoidea: Pseudomelatomidae)

description: Table 1. The recorded absolute and relative species richness of Leucosyrinx Dall, 1889 in different studied areas.
RegionNo. of sppNo. of haulsNo. of hauls/no. spp.Philippines1014814.8PNG–Solomon Islands3068422.8Madagascar, Mozambique717625,1South China Sea25427Walters Shoal14444Vanuatu314448New Caledonia–Coral Sea1476854.8Society Islands2204102
description: Published as part of Kantor, Yuri I., Fedosov, Alexander & Puillandre, Nicolas, 2025, Revision of the Indo-Pacific species of the genus Leucosyrinx Dall, 1889 (Neogastropoda: Conoidea: Pseudomelatomidae), pp. 119 in European Journal of Taxonomy 999 on page 119, DOI: 10.5852/ejt.2025.999.2945, http://zenodo.org/record/15881061
DOI: 10.5281/zenodo.16359847
title: Table 1 in Revision of the Indo-Pacific species of the genus Leucosyrinx Dall, 1889 (Neogastropoda: Conoidea: Pseudomelatomidae)

description: Table 1. The recorded absolute and relative species richness of Leucosyrinx Dall, 1889 in different studied areas.
RegionNo. of sppNo. of haulsNo. of hauls/no. spp.Philippines1014814.8PNG–Solomon Islands3068422.8Madagascar, Mozambique717625,1South China Sea25427Walters Shoal14444Vanuatu314448New Caledonia–Coral Sea1476854.8Society Islands2204102
description: Published as part of Kantor, Yuri I., Fedosov, Alexander & Puillandre, Nicolas, 2025, Revision of the Indo-Pacific species of the genus Leucosyrinx Dall, 1889 (Neogastropoda: Conoidea: Pseudomelatomidae), pp. 119 in European Journal of Taxonomy 999 on page 119, DOI: 10.5852/ejt.2025.999.2945, http://zenodo.org/record/15881061
DOI: 10.6084/m9.figshare.29626079.v1
title: Fluconazole tolerance and virulence adaptations of Candida albicansisolated from head and neck cancer patients

description: <i>Candida albicans</i> is the predominant opportunistic pathogen causing oral candidiasis in immunocompromised head and neck cancer (HNC) patients. Fluconazole (FLC) is commonly used for treatment and prophylaxis; however, persistent infections remain a clinical challenge during cancer therapy. We hypothesized that <i>C. albicans </i>survival under FLC exposure may be driven by the development of tolerance or resistance, accompanied by altered virulence traits. In this study, we characterized FLC susceptibility and virulence profiles of clinical C. albicans isolates obtained from HNC patients. Most isolates were susceptible to FLC, but two tolerant phenotypes, moderate (MT) and heavy tolerance (HT), were identified. FLC prophylaxis did not significantly affect tolerance prevalence or severity. Both tolerant isolates exhibited upregulation of key resistance genes, ERG11. Under FLC exposure, the MT isolate modestly increased expression of ALS1 and SAP6, while downregulating other virulence genes, correlating with reduced adhesion and biofilm formation. Conversely, the HT isolate upregulated ALS3, HWP1, and SAP6, enhancing adhesion and sustaining biofilm integrity. Despite SAP6 upregulation in both, host cell cytotoxicity was similar. These findings highlight adaptive mechanisms by which FLC-tolerant <i>C. albicans r</i>etain pathogenicity under antifungal stress, posing potential challenges for clinical management in HNC patients.
DOI: 10.6084/m9.figshare.29626079
title: Fluconazole tolerance and virulence adaptations of Candida albicansisolated from head and neck cancer patients

description: <i>Candida albicans</i> is the predominant opportunistic pathogen causing oral candidiasis in immunocompromised head and neck cancer (HNC) patients. Fluconazole (FLC) is commonly used for treatment and prophylaxis; however, persistent infections remain a clinical challenge during cancer therapy. We hypothesized that <i>C. albicans </i>survival under FLC exposure may be driven by the development of tolerance or resistance, accompanied by altered virulence traits. In this study, we characterized FLC susceptibility and virulence profiles of clinical C. albicans isolates obtained from HNC patients. Most isolates were susceptible to FLC, but two tolerant phenotypes, moderate (MT) and heavy tolerance (HT), were identified. FLC prophylaxis did not significantly affect tolerance prevalence or severity. Both tolerant isolates exhibited upregulation of key resistance genes, ERG11. Under FLC exposure, the MT isolate modestly increased expression of ALS1 and SAP6, while downregulating other virulence genes, correlating with reduced adhesion and biofilm formation. Conversely, the HT isolate upregulated ALS3, HWP1, and SAP6, enhancing adhesion and sustaining biofilm integrity. Despite SAP6 upregulation in both, host cell cytotoxicity was similar. These findings highlight adaptive mechanisms by which FLC-tolerant <i>C. albicans r</i>etain pathogenicity under antifungal stress, posing potential challenges for clinical management in HNC patients.
DOI: 10.15468/dl.tmu68g
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oncoba routledgei",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 59 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033281-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4e8r74
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Frankenia pulverulenta",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 19 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033280-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q7wg4g
title: Occurrence Download

description: A dataset containing 5388 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes aegypti",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5388 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033283-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w2652k
title: Occurrence Download

description: A dataset containing 110145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is Succisa pratensis",
 "Continent is Europe",
 "Year is 1985,2020",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than 1000",
 {
 "not" : {
 "CoordinateUncertaintyInMeters" : [
 "is 301"
 ]
 }
 },
 {
 "not" : {
 "CoordinateUncertaintyInMeters" : [
 "is 999"
 ]
 }
 }
 ]
}

 The dataset includes 110145 records from 284 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033273-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.brf2ge
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lobostemon glaber"
 ]
}

 The dataset includes 144 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033282-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34810/data2482
title: GBIF filtetred occurrence datasets for 44 tree species

description: &lt;p&gt;GBIF filtered datasets used for defining the species climatic niche in Batllori et al. "Effects of niche marginality on hot drought tree mortality in angiosperms and gymnosperms"
&lt;p&gt;Each file (.Rdata file) is designated by the name of a species and contains two columns, longitude (long) and latitude (lat) in WGS1984 coordinate system.
For most species, GBIF data was downloaded in July 2020 using the dismo R package and filtered following the steps described below. Data for the following species was manually downloaded Betula pendula, Fagus sylvatica, Olea europaea, Picea abies, Pinus halepensis, Pinus pinaster, Pinus sylvestris, Quercus robur. 

&lt;p&gt;Ocurrence records filtering: 
&lt;p&gt;1. removing fossil specimes
&lt;p&gt;2. removing "duplicate" species on the basis of 'speciesKey' (if more than speciesKey one was present the one with more records was retained)
&lt;p&gt;3. when available, filtering for coordinate uncertainty in meters (for a 1x1 km grid the diagonal value is 707). Note that NA values were retained and that when such filtering yielded very low sample (&lt;100 records) this step was omitted.
&lt;p&gt;4. filtering occurrences registered after 1950. Note that when such filtering yielded very low sample (&lt;100 records) this step was omitted.
&lt;p&gt;5. removing duplicates based on geographic coordinates
&lt;p&gt;6. selecting only one observation in each 1x1km pixel (using the gridSample function from dismo package)
&lt;p&gt;7. retaining only lon-lat coordinates

&lt;p&gt;This derived dataset was created following GBIF instructions (https://www.gbif.org/derived-dataset/about).
&lt;p&gt;
&lt;p&gt;The file "GBIF_citation_Derived_dataset.csv" contains the datasetKey and number of records retained in the filtered datasets for all species.
DOI: 10.15468/dl.8xzsx2
title: Occurrence Download

description: A dataset containing 316 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Iris stolonifera"
 ]
}

 The dataset includes 316 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033285-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ubeghm
title: Occurrence Download

description: A dataset containing 751 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brachyscome sinclairii"
 ]
}

 The dataset includes 751 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033286-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4h7rb4
title: Occurrence Download

description: A dataset containing 814 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nepeta laevigata"
 ]
}

 The dataset includes 814 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033287-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k86x6z
title: Occurrence Download

description: A dataset containing 983 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "DatasetKey is one of (Naturalis Biodiversity Center (NL) - Mammalia, EcoCertified: A cameraTrap survey in solar field and control grasslands, Natural History Museum Rotterdam - Specimens, Observations Regelink Ecology and Landscape, INSDC Sequences, Natuurmuseum Brabant, Tilburg - Vertebrates, Dutch Mammal Society (NL) - Mammal observations extracted from historic reports, NABU|naturgucker)",
 "OccurrenceStatus is Present",
 "TaxonKey is Mustela erminea"
 ]
}

 The dataset includes 983 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033289-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.