cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10809131
title: Data and code for: Assessing the Reliability of Point Mutation as Data Augmentation for Deep Learning with Genomic Data

description: Data and code for the paper "Assessing the Reliability of Point Mutation as Data Augmentation for Deep Learning with Genomic Data".
DOI: 10.5281/zenodo.8210512
title: Historical tree phenology data reveal the seasonal rhythms of the Congo Basin rainforest

description: Tropical forest phenology directly affects regional carbon cycles, but the relation between species-specific and whole-canopy phenology remains largely uncharacterized. We present a unique dataset of historical tropical tree phenology collected in the central Congo Basin, before large-scale impacts of human-induced climate change.

Historical data was recovered from a phenological study carried out between 1937 and 1956 in the central Congo Basin at the Yangambi Research Station (N00°48’, E24°29’) in what is now the Democratic Republic of Congo (DRC). The data were retrieved from the archives of the INERA (Institut National pour l'Etude et la Recherche Agronomique) herbarium at the Yangambi Research Station.

Ground-based phenological observations of local tropical trees were made four times each month on a rotating schedule (resolution of 7.2 days on average) from 1937 until 1956 by the forestry division of the INEAC (Institut National pour l'Étude Agronomique du Congo). The sampling protocol was recovered at the State Archives of Belgium, including details on the observation methods, the observational routes and the training and schedules of the observers. Canopy leaf senescence was defined as a distinct period during which leaves fall and trees remain bare, while canopy turnover was defined as a period during which leaf-fall comes in peaks with concomitant flushes of new leaves (INEAC archives). Summarised data sheets of these long-term observations were digitized using 12 MP resolution cameras. The hand-written notes and annotations depicting phenophases during the observational period were digitized to binary data (yes or no phenophase event at each time-step) through an online citizen science project ‘Jungle Rhythms’ (Hufkens & Kearsley 2023, https://www.zooniverse.org/projects/khufkens/jungle-rhythms). 

A selection of species found in the historical forest inventories (Pierlot 1966) are presented, representing 96.0% of the basal area within these inventories. The phenological data comprises 668 individuals covering 140 species (representing 112 genus and 38 families) for a total of 5011 individual observation years (overview of species in Supplementary Table S1). We did not include individuals that were only identified to genus-level.

This data accompanies the publication ‘Kearsley, E., Verbeeck, H., Stoffelen, P., Janssens, S. B., Yakusu, E. K., Kosmala, M., De Mil, T., Bauters, M., Kitima, E. R., Ndiapo, J. M., Chuda, A. L., Richardson, A. D., Wingate, L., Ilondea, B. A., Beeckman, H., van den Bulcke, J., Boeckx, P., & Hufkens, K. (2024). Historical tree phenology data reveal the seasonal rhythms of the Congo Basin rainforest. Plant-Environment Interactions, 5, e10136. https://doi.org/10.1002/pei3.10136’.

ReferencePierlot, R. (1966). Structure et composition de forêts denses d’Afrique Centrale, spécialement celles du Kivu. Academie Royale des Sciences d’Outre-Mer. Classe des Sciences naturelles et medicales. N.S. XVI-4, Bruxelles, p. 367.
DOI: 10.5281/zenodo.8210513
title: Historical tree phenology data reveal the seasonal rhythms of the Congo Basin rainforest

description: Tropical forest phenology directly affects regional carbon cycles, but the relation between species-specific and whole-canopy phenology remains largely uncharacterized. We present a unique dataset of historical tropical tree phenology collected in the central Congo Basin, before large-scale impacts of human-induced climate change.

Historical data was recovered from a phenological study carried out between 1937 and 1956 in the central Congo Basin at the Yangambi Research Station (N00°48’, E24°29’) in what is now the Democratic Republic of Congo (DRC). The data were retrieved from the archives of the INERA (Institut National pour l'Etude et la Recherche Agronomique) herbarium at the Yangambi Research Station.

Ground-based phenological observations of local tropical trees were made four times each month on a rotating schedule (resolution of 7.2 days on average) from 1937 until 1956 by the forestry division of the INEAC (Institut National pour l'Étude Agronomique du Congo). The sampling protocol was recovered at the State Archives of Belgium, including details on the observation methods, the observational routes and the training and schedules of the observers. Canopy leaf senescence was defined as a distinct period during which leaves fall and trees remain bare, while canopy turnover was defined as a period during which leaf-fall comes in peaks with concomitant flushes of new leaves (INEAC archives). Summarised data sheets of these long-term observations were digitized using 12 MP resolution cameras. The hand-written notes and annotations depicting phenophases during the observational period were digitized to binary data (yes or no phenophase event at each time-step) through an online citizen science project ‘Jungle Rhythms’ (Hufkens & Kearsley 2023, https://www.zooniverse.org/projects/khufkens/jungle-rhythms). 

A selection of species found in the historical forest inventories (Pierlot 1966) are presented, representing 96.0% of the basal area within these inventories. The phenological data comprises 668 individuals covering 140 species (representing 112 genus and 38 families) for a total of 5011 individual observation years (overview of species in Supplementary Table S1). We did not include individuals that were only identified to genus-level.

This data accompanies the publication ‘Kearsley, E., Verbeeck, H., Stoffelen, P., Janssens, S. B., Yakusu, E. K., Kosmala, M., De Mil, T., Bauters, M., Kitima, E. R., Ndiapo, J. M., Chuda, A. L., Richardson, A. D., Wingate, L., Ilondea, B. A., Beeckman, H., van den Bulcke, J., Boeckx, P., & Hufkens, K. (2024). Historical tree phenology data reveal the seasonal rhythms of the Congo Basin rainforest. Plant-Environment Interactions, 5, e10136. https://doi.org/10.1002/pei3.10136’.

ReferencePierlot, R. (1966). Structure et composition de forêts denses d’Afrique Centrale, spécialement celles du Kivu. Academie Royale des Sciences d’Outre-Mer. Classe des Sciences naturelles et medicales. N.S. XVI-4, Bruxelles, p. 367.
DOI: 10.34740/kaggle/dsv/7824785
title: Data Scientist - Linkedin Job Postings
DOI: 10.5281/zenodo.10808469
title: Spherical harmonic models of the gravity field of Enceladus

description: This archive contains previously published models of the gravitational field of Saturn's moon Enceladus.



Iess2014.sh (SOL1)

Park2024.sh (Case 2)


All models make use of unnormalized spherical harmonic functions that exclude the Condon-Shortley phase factor of (-1)^m.
DOI: 10.5281/zenodo.10808470
title: Spherical harmonic models of the gravity field of Enceladus

description: This archive contains previously published models of the gravitational field of Saturn's moon Enceladus.



Iess2014.sh (SOL1)

Park2024.sh (Case 2)


All models make use of unnormalized spherical harmonic functions that exclude the Condon-Shortley phase factor of (-1)^m.
DOI: 10.5281/zenodo.10808948
title: Spherical harmonic models of the gravity field of Enceladus

description: This archive contains previously published models of the gravitational field of Saturn's moon Enceladus.



Iess2014.sh (SOL1)

Park2024.sh (Case 2)


All models make use of unnormalized spherical harmonic functions that exclude the Condon-Shortley phase factor of (-1)^m.
DOI: 10.5281/zenodo.10809142
title: Spherical harmonic models of the gravity field of Enceladus

description: This archive contains previously published models of the gravitational field of Saturn's moon Enceladus.



Iess2014.sh (SOL1)

Park2024.sh (Case 2)


All models make use of unnormalized spherical harmonic functions that exclude the Condon-Shortley phase factor of (-1)^m.
DOI: 10.34740/kaggle/dsv/7824797
title: Data Analyst Job Postings
DOI: 10.15151/esrf-dc-1562905475
title: Raw data (diffraction images) for PDB entry "L-amino acid oxidase 4 (HcLAAO4) from the fungus Hebeloma cylindrosporum in complex with L-glutamine"

description: All relevant information can be found in the PDB entry and the associated publication.
DOI: 10.5281/zenodo.10809137
title: Avaliação dos usuários D+
DOI: 10.5281/zenodo.10809138
title: Avaliação dos usuários D+
DOI: 10.15151/esrf-dc-1562905483
title: Raw data (diffraction images) for PDB entry "L-amino acid oxidase 4 (HcLAAO4) from the fungus Hebeloma cylindrosporum in complex with L-glutamate"

description: All relevant information can be found in the PDB entry and the associated publication.
DOI: 10.5281/zenodo.10809129
title: Time-bin entanglement in the deterministic generation of linear photonic cluster states

description: We investigate strategies for the efficient deterministic creation of trains of time-bin entangled photons using an individual quantum emitter described by a $\Lambda$-type electronic system. We explicitly demonstrate generation of high-quality linear cluster states of substantial length in our full microscopic numerical simulations. The underlying scheme is based on the manipulation of ground state coherences through precise optical driving. One important finding is that the most easily accessible quality metrics, the achievable rotation fidelities, fall short in assessing the actual quantum correlations of the emitted photons in the face of losses. To address this, we explicitly calculate stabilizer generator expectation values as a superior gauge for the quantum properties of the many-photon state. Our results illustrate that with controlled minimization of losses and realistic system parameters for quantum-dot type systems, useful linear cluster states of significant lengths can be generated, showcasing promise of scalability for quantum information processing endeavors.
DOI: 10.5281/zenodo.8382145
title: Data sets and R codes for "It's about her: male within-season movements are related to mate searching in a songbird"

description: Abstract
In species with resource-defense mating systems (such as most temperate-breeding songbirds), male dispersal is often considered to be limited in both frequency and spatial extent. When dispersal occurs within a breeding season, the favored explanation is ecological resource tracking. In contrast, movements of male birds associated with temporary emigration, such as polyterritoriality (i.e., defense of an additional location after attracting a female in the initial territory), are usually attributed to mate searching. We suggest that male dispersal and polyterritoriality are functionally related, and that mate searching may be a unifying hypothesis for predicting the within-season movements of male songbirds. Here, we test three key predictions derived from this hypothesis in Wood Warblers Phylloscopus sibilatrix. We collected data on the spatial behavior of 107 males between 2017 and 2019, and related male movements to a new territory (both in a dispersal and polyterritorial context) to mating potential in the current territory. Most males dispersed from their territories within days or weeks after failing to attract a female, despite occupying territories in apparently suitable habitat. Probability of polyterritoriality by paired males increased after the peak fertile period of their mate. Males never dispersed following nest predation if the female remained to renest. Thus, our data are consistent with the hypothesis that both movement types are functionally related to mate searching.
DOI: 10.15151/esrf-dc-1562905491
title: Raw data (diffraction images) for PDB entry "L-amino acid oxidase 4 (HcLAAO4) from the fungus Hebeloma cylindrosporum in complex with L-phenylalanine"

description: All relevant information can be found in the PDB entry and the associated publication.
DOI: 10.5281/zenodo.10801873
title: Data for study - LLMS curricula and syllabuses

description: The aim of this study is to analyze the ability of the LLM to generate curricula for education programs and syllabuses for specific courses at HEIs level. Four solutions providing LLM functionality were tested: GPT-3.5, GPT-4, Bard and Gemini.

The dataset contains the following elements:



comparison of curricula generated by models with existing curricula for two fields of study: Management and Economics (at economic universities in Poland) - Polish and English language versions

comparison of syllabuses generated by models with existing syllabuses at economic universities in Poland (4 courses for 2 fields of study) - Polish and English language versions
DOI: 10.5281/zenodo.10801874
title: Data for study - LLMS curricula and syllabuses

description: The aim of this study is to analyze the ability of the LLM to generate curricula for education programs and syllabuses for specific courses at HEIs level. Four solutions providing LLM functionality were tested: GPT-3.5, GPT-4, Bard and Gemini.

The dataset contains the following elements:



comparison of curricula generated by models with existing curricula for two fields of study: Management and Economics (at economic universities in Poland) - Polish and English language versions

comparison of syllabuses generated by models with existing syllabuses at economic universities in Poland (4 courses for 2 fields of study) - Polish and English language versions
DOI: 10.5281/zenodo.10809143
title: Borehole campaign 2017 - Hinge test site

description: Contains borehole profiles from the High Plasticity Clay test site located in Hinge, Denmark
DOI: 10.5281/zenodo.10809144
title: Borehole campaign 2017 - Hinge test site

description: Contains borehole profiles from the High Plasticity Clay test site located in Hinge, Denmark
DOI: 10.5281/zenodo.10809111
title: QiucenTao/Voltage-sensitivity-of-residential-loads: Voltage Sensitivity-Release v2.0.0

description: v2.0.0 release of the voltage sensitivity for residential loads
DOI: 10.5281/zenodo.10809112
title: QiucenTao/Voltage-sensitivity-of-residential-loads: Voltage Sensitivity-Release v2.0.0

description: v2.0.0 release of the voltage sensitivity for residential loads
DOI: 10.48706/zbmv-jt30
title: Moritz Steinschneider Correspondence at the JTSA (ARC. 108): An Inventory

description: The library of the Jewish Theological Seminary, New York, holds the Moritz Steinschneider Papers under the shelfmark ARC 108, consisting of correspondence, miscellaneous notes, research materials, offprints, catalogs etc. Between 2-5 October 2023, the present writer together with Reimund Leicht visited the JTS library and consulted the entire Moritz Steinschneider Papers with the aim of preparing a detailed inventory of the materials they include. The present dataset constitutes a preliminary result, listing all of Steinschneider’s correspondents in alphabetical order.
The correspondence that is found among the Moritz Steinschneider Papers consists of letters and postcards Steinschneider had received since the 1840s until his death on 24 January 1907. While Steinschneider did not keep copies of his own correspondence to others, he noted, in red ink, on the letters and postcards he had received the dates when he had responded to them. Moreover, Steinschneider recorded his correspondence from 1855 through 1907 in three small notebooks, whose entries, arranged according to year, month, and day, list the letters and postcards he received and replied to on each day. They also indicate the dates given on the letters sent to him. The Moritz Steinschneider Papers also include some documentation relating to the transfer of Steinschneider’s Nachlass to the JTS.
The aim of the present inventory is to provide a first comprehensive overview of those from whom Steinschneider received letters that are included today among the Moritz Steinschneider Papers. Since the material is still largely in disorder, letters and postcards from the persons listed below are found in numerous locations of the Nachlass. Names that are rendered in green could be verified, names rendered in purple might refer to the same person.
DOI: 10.5883/ds-inmeg242
title: First record of the giant anemone, Relicanthus daphneae, capturing prey on the periphery of hydrothermal vent fields in the Indian Ocean.

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5281/zenodo.10634576
title: Data set: Combined study of phase transitions in the P2-type NaX Ni1/3 Mn2/3 O2 cathode material

description: This data set contains raw data for the corresponding manuscript.
DOI: 10.5281/zenodo.8100265
title: Data set: Combined study of phase transitions in the P2-type NaX Ni1/3 Mn2/3 O2 cathode material

description: This data set contains raw data for the corresponding manuscript.
DOI: 10.5281/zenodo.8100266
title: Data set: Combined study of phase transitions in the P2-type NaX Ni1/3 Mn2/3 O2 cathode material

description: This data set contains raw data for the corresponding manuscript.
DOI: 10.4121/f422d62f-62ef-4fe5-9000-bc057ff8454a
title: F3 - offshore deployments - Realdune/REFLEX

description: This dataset contains the data collected at frame F3 during the Realdune/REFLEX field experiments. The netcdf files <em>adv_vector_F3.nc</em> and <em>adcp_workhorse_F3.n</em>c contain the quality-controlled timeseries collected by the ADV (deployment period P1, 15 Nov 2021 - 24 Jan 2022 ) and the Workhorse ADCP (deployment period P2, 24 Jan 2022 - 13 Apr 2022), while the file <em>processedDataF3.nc </em> contains the hourly bulk wave parameters and wave spectra calculated from these instruments for the entire measurement period. Raw files from both instruments are furthermore provided (ascii files). This dataset is part of the data collection 'Data collection underlying the publication: Continuous Wave Measurements Collected in Intermediate Depth throughout the North Sea Storm Season during the RealDune/REFLEX Experiments' and is further described in the paper by Rutten et al. (under review).
DOI: 10.4121/f422d62f-62ef-4fe5-9000-bc057ff8454a.v1
title: F3 - offshore deployments - Realdune/REFLEX

description: This dataset contains the data collected at frame F3 during the Realdune/REFLEX field experiments. The netcdf files <em>adv_vector_F3.nc</em> and <em>adcp_workhorse_F3.n</em>c contain the quality-controlled timeseries collected by the ADV (deployment period P1, 15 Nov 2021 - 24 Jan 2022 ) and the Workhorse ADCP (deployment period P2, 24 Jan 2022 - 13 Apr 2022), while the file <em>processedDataF3.nc </em> contains the hourly bulk wave parameters and wave spectra calculated from these instruments for the entire measurement period. Raw files from both instruments are furthermore provided (ascii files). This dataset is part of the data collection 'Data collection underlying the publication: Continuous Wave Measurements Collected in Intermediate Depth throughout the North Sea Storm Season during the RealDune/REFLEX Experiments' and is further described in the paper by Rutten et al. (under review).
DOI: 10.6084/m9.figshare.25305181
title: SI 6. Published mercury concentration in different marine organisms in the North Sea and the other relevant ICES regions from various sources from An approach to assessing subsea pipeline-associated mercury release into the North Sea and its potential environmental and human health impact

description: ESM file 2
DOI: 10.6084/m9.figshare.25305181.v1
title: SI 6. Published mercury concentration in different marine organisms in the North Sea and the other relevant ICES regions from various sources from An approach to assessing subsea pipeline-associated mercury release into the North Sea and its potential environmental and human health impact

description: ESM file 2
DOI: 10.4121/161aab5e-2e2e-4df0-b3ce-3245d9da764f
title: Supplementary data - offshore deployments - Realdune/REFLEX

description: Supplementary data for the offshore measurements conducted as part of the RealDune/REFLEX experiments at the Dutch coast in Autumn/Winter 2021/2022. This dataset is part of the data collection 'Data collection underlying the publication: Continuous wave measurements collected in intermediate depth throughout the North Sea storm season during the RealDune/REFLEX experiments'. The air pressure data was downloaded from https://www.knmi.nl/nederland-nu/klimatologie/uurgegevens and the tidal elevation near the study site, obtained as the weighted average of the signal at the tidal stations of Scheveningen and Hoek van Holland were obtained from https://waterinfo.rws.nl/. Cross-shore bed profiles along the 3 instrumented offshore frames measured on 3 November 2021 and 17 December 2021 are also provided.
DOI: 10.4121/161aab5e-2e2e-4df0-b3ce-3245d9da764f.v1
title: Supplementary data - offshore deployments - Realdune/REFLEX

description: Supplementary data for the offshore measurements conducted as part of the RealDune/REFLEX experiments at the Dutch coast in Autumn/Winter 2021/2022. This dataset is part of the data collection 'Data collection underlying the publication: Continuous wave measurements collected in intermediate depth throughout the North Sea storm season during the RealDune/REFLEX experiments'. The air pressure data was downloaded from https://www.knmi.nl/nederland-nu/klimatologie/uurgegevens and the tidal elevation near the study site, obtained as the weighted average of the signal at the tidal stations of Scheveningen and Hoek van Holland were obtained from https://waterinfo.rws.nl/. Cross-shore bed profiles along the 3 instrumented offshore frames measured on 3 November 2021 and 17 December 2021 are also provided.
DOI: 10.4121/b4303af8-96ae-4048-905a-4e8b8e3e786b
title: F1 - offshore deployments - Realdune/REFLEX

description: This dataset contains the data collected at frame F1 during the RealDune/REFLEX experiments. The netcdf files <em>adcp_signature_F1.nc</em> and <em>adcp_workhorse_F1.n</em>c contain the quality-controlled timeseries for the Signature ADCP and the Workhorse ADCP deployed on this frame during the 5-month field campaign. <em>processedDataF1.nc </em> contains hourly bulk wave parameters and wave spectra calculated from the Signature ADCP timeseries. Raw files from both instruments are furthermore provided for the 2 successive deployment periods, P1 (15 Nov 2021 - 24 Jan 2022) and P2 (24 Jan 2022 - 13 Apr 2022). This dataset is part of the data collection 'Data collection underlying the publication: Continuous Wave Measurements Collected in Intermediate Depth throughout the North Sea Storm Season during the RealDune/REFLEX Experiments' and is further described in the paper by Rutten et al. (under review).
DOI: 10.4121/b4303af8-96ae-4048-905a-4e8b8e3e786b.v1
title: F1 - offshore deployments - Realdune/REFLEX

description: This dataset contains the data collected at frame F1 during the RealDune/REFLEX experiments. The netcdf files <em>adcp_signature_F1.nc</em> and <em>adcp_workhorse_F1.n</em>c contain the quality-controlled timeseries for the Signature ADCP and the Workhorse ADCP deployed on this frame during the 5-month field campaign. <em>processedDataF1.nc </em> contains hourly bulk wave parameters and wave spectra calculated from the Signature ADCP timeseries. Raw files from both instruments are furthermore provided for the 2 successive deployment periods, P1 (15 Nov 2021 - 24 Jan 2022) and P2 (24 Jan 2022 - 13 Apr 2022). This dataset is part of the data collection 'Data collection underlying the publication: Continuous Wave Measurements Collected in Intermediate Depth throughout the North Sea Storm Season during the RealDune/REFLEX Experiments' and is further described in the paper by Rutten et al. (under review).
DOI: 10.5883/ds-aegean
title: DNA barcoding of freshwater fishes in Aegean Turkey reveals mosaic distribution patterns and taxonomic inconsistencies

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.