cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12874266
title: Additional file 3 of Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish genomes

description: Additional file 3:An example of multiple gene hits corresponding to odorant receptor gene family (sheet 1) or protocadherin gene family (sheet 2) in zebrafish. (XLS 43 KB)
DOI: 10.6084/m9.figshare.7982933
title: Supplementary Table 2 from Ecological factors and morphological traits are associated with repeated genomic differentiation between lake and stream stickleback

description: The number of double outlier SNPs for each trait and magnitude of repeatability for each 50 kbp window.
DOI: 10.6084/m9.figshare.12874266.v1
title: Additional file 3 of Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish genomes

description: Additional file 3:An example of multiple gene hits corresponding to odorant receptor gene family (sheet 1) or protocadherin gene family (sheet 2) in zebrafish. (XLS 43 KB)
DOI: 10.6084/m9.figshare.12874284.v2
title: Additional file of Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish genomes

description: Additional file of Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish genomes
DOI: 10.6084/m9.figshare.12874284.v5
title: Additional file of Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish genomes

description: Additional file of Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish genomes
DOI: 10.6084/m9.figshare.12874263.v1
title: Additional file 2 of Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish genomes

description: Additional file 2:PCR conditions, allele size range, number of alleles and GenBank accession numbers for tested microsatellites. Duplicated markers are in bold. ND indicates that for these duplicated microsatellite it was not possible to determine the allele numbers. * indicates monomorphic or non informative microsatellites in the mapping panel. Abbreviations: Atp: Annealing temperature. (XLS 30 KB)
DOI: 10.6084/m9.figshare.12874284.v4
title: Additional file of Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish genomes

description: Additional file of Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish genomes
DOI: 10.6084/m9.figshare.7982927
title: Supplementary Table 1 from Ecological factors and morphological traits are associated with repeated genomic differentiation between lake and stream stickleback

description: Spearman's rho correlation coefficient and Bayes factor thresholds of significance for each trait.
DOI: 10.6084/m9.figshare.7982933.v1
title: Supplementary Table 2 from Ecological factors and morphological traits are associated with repeated genomic differentiation between lake and stream stickleback

description: The number of double outlier SNPs for each trait and magnitude of repeatability for each 50 kbp window.
DOI: 10.6084/m9.figshare.7982936.v1
title: Table S1 from Is there convergence of gut microbes in blood-feeding vertebrates?

description: Sample information
DOI: 10.6084/m9.figshare.7982939.v1
title: Table S3 from Is there convergence of gut microbes in blood-feeding vertebrates?

description: Full list of differentially abundant KOs and KEGG pathways with their functional descriptions between hematophagous and non-hematophagous bats and birds, as determined by ANCOM. Host group(s) indicates the group(s) for which the given feature was considered differentially abundant. Mean abundances of the KOs and pathways in hematophagous and non-hematophagous bats and birds are provided.
DOI: 10.6084/m9.figshare.12874284.v3
title: Additional file of Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish genomes

description: Additional file of Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish genomes
DOI: 10.6084/m9.figshare.7982921
title: Supplementary Table 3 from Ecological factors and morphological traits are associated with repeated genomic differentiation between lake and stream stickleback

description: P- values and number of candidate trait or repeatedly differentiated windows for each chromosome.
DOI: 10.6084/m9.figshare.7982927.v1
title: Supplementary Table 1 from Ecological factors and morphological traits are associated with repeated genomic differentiation between lake and stream stickleback

description: Spearman's rho correlation coefficient and Bayes factor thresholds of significance for each trait.
DOI: 10.6084/m9.figshare.12874263
title: Additional file 2 of Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish genomes

description: Additional file 2:PCR conditions, allele size range, number of alleles and GenBank accession numbers for tested microsatellites. Duplicated markers are in bold. ND indicates that for these duplicated microsatellite it was not possible to determine the allele numbers. * indicates monomorphic or non informative microsatellites in the mapping panel. Abbreviations: Atp: Annealing temperature. (XLS 30 KB)
DOI: 10.6084/m9.figshare.7982921.v1
title: Supplementary Table 3 from Ecological factors and morphological traits are associated with repeated genomic differentiation between lake and stream stickleback

description: P- values and number of candidate trait or repeatedly differentiated windows for each chromosome.
DOI: 10.6084/m9.figshare.7982858
title: LC-QuAD 2.0

description: question answering<br>
DOI: 10.6084/m9.figshare.12874302
title: Additional file 3 of A tissue-specific landscape of sense/antisense transcription in the mouse intestine

description: Additional file 3:Gene ontology analysis. Gene ontology analysis to investigate the presents or absence of gene ontology terms in either or both tissues. (XLS 11 MB)
DOI: 10.6084/m9.figshare.12874323.v6
title: Additional file of A tissue-specific landscape of sense/antisense transcription in the mouse intestine

description: Additional file of A tissue-specific landscape of sense/antisense transcription in the mouse intestine
DOI: 10.6084/m9.figshare.12874305
title: Additional file 4 of A tissue-specific landscape of sense/antisense transcription in the mouse intestine

description: Additional file 4:List of nTARs. All novel transcriptionally active regions with a minimum length of 50 bp and support of at least three reads of the second protocol. (XLS 5 MB)
DOI: 10.6084/m9.figshare.12874302.v1
title: Additional file 3 of A tissue-specific landscape of sense/antisense transcription in the mouse intestine

description: Additional file 3:Gene ontology analysis. Gene ontology analysis to investigate the presents or absence of gene ontology terms in either or both tissues. (XLS 11 MB)
DOI: 10.6084/m9.figshare.12874305.v1
title: Additional file 4 of A tissue-specific landscape of sense/antisense transcription in the mouse intestine

description: Additional file 4:List of nTARs. All novel transcriptionally active regions with a minimum length of 50 bp and support of at least three reads of the second protocol. (XLS 5 MB)
DOI: 10.6084/m9.figshare.12874308
title: Additional file 5 of A tissue-specific landscape of sense/antisense transcription in the mouse intestine

description: Additional file 5:Differentially expressed nTARs. All nTARs differentially expressed in the small intestine compared to the colon. (XLS 4 MB)
DOI: 10.6084/m9.figshare.12874299.v1
title: Additional file 2 of A tissue-specific landscape of sense/antisense transcription in the mouse intestine

description: Additional file 2:Intestinal gene expression. Gene expression values were calculated using Cufflinks for both investigated intestinal tissues. Expression is measured in Fragments Per Kilobase of transcript per Million mapped reads (FPKM). (XLS 18 MB)
DOI: 10.6084/m9.figshare.12874308.v1
title: Additional file 5 of A tissue-specific landscape of sense/antisense transcription in the mouse intestine

description: Additional file 5:Differentially expressed nTARs. All nTARs differentially expressed in the small intestine compared to the colon. (XLS 4 MB)
DOI: 10.6084/m9.figshare.12874323.v7
title: Additional file of A tissue-specific landscape of sense/antisense transcription in the mouse intestine

description: Additional file of A tissue-specific landscape of sense/antisense transcription in the mouse intestine
DOI: 10.6084/m9.figshare.12874323.v8
title: Additional file of A tissue-specific landscape of sense/antisense transcription in the mouse intestine

description: Additional file of A tissue-specific landscape of sense/antisense transcription in the mouse intestine
DOI: 10.6084/m9.figshare.12874323.v9
title: Additional file of A tissue-specific landscape of sense/antisense transcription in the mouse intestine

description: Additional file of A tissue-specific landscape of sense/antisense transcription in the mouse intestine
DOI: 10.6084/m9.figshare.12874311.v1
title: Additional file 6 of A tissue-specific landscape of sense/antisense transcription in the mouse intestine

description: Additional file 6:nTARs with poly-A tag. All nTARs associated with poly-A tags which have been identified by pyrosequencing. In addition, authors provide a browsable transcriptome/genome viewer for easy data examination on their institutional homepage: http://ucsc.ikmb.uni-kiel.de/cgi-bin/hgTracks (XLS 986 KB)
DOI: 10.6084/m9.figshare.12874311
title: Additional file 6 of A tissue-specific landscape of sense/antisense transcription in the mouse intestine

description: Additional file 6:nTARs with poly-A tag. All nTARs associated with poly-A tags which have been identified by pyrosequencing. In addition, authors provide a browsable transcriptome/genome viewer for easy data examination on their institutional homepage: http://ucsc.ikmb.uni-kiel.de/cgi-bin/hgTracks (XLS 986 KB)
DOI: 10.6084/m9.figshare.12874323.v5
title: Additional file of A tissue-specific landscape of sense/antisense transcription in the mouse intestine

description: Additional file of A tissue-specific landscape of sense/antisense transcription in the mouse intestine
DOI: 10.6084/m9.figshare.12874299
title: Additional file 2 of A tissue-specific landscape of sense/antisense transcription in the mouse intestine

description: Additional file 2:Intestinal gene expression. Gene expression values were calculated using Cufflinks for both investigated intestinal tissues. Expression is measured in Fragments Per Kilobase of transcript per Million mapped reads (FPKM). (XLS 18 MB)
DOI: 10.6084/m9.figshare.7982696
title: A dvinosaurian temnospondyl from the Carboniferous-Permian boundary of Germany sheds light on dvinosaurian phylogeny and distribution

description: A complete skull and well-preserved postcranium of a dvinosaurian temnospondyl from the Carboniferous-Permian boundary of Germany is referred to a new genus and species, <i>Trypanognathus remigiusbergensis</i>. The skull closely resembles that of the early Permian dvinosaurian genus <i>Trimerorhachis</i> in outline and suture topology, but the occiput and the palate differ substantially. Derived states are the penetration of vomerine tusks through the splenial and symphyseal tusks through the premaxilla. <i>Trypanognathus</i> shares with dvinosauroids the lack of a squamosal embayment, an elongated basipterygoid process, a foreshortened palatine ramus exclusively reaching the ectopterygoid, the absence of pterygoid denticles, and enlarged palatal tusks. The body is elongate with well-ossified, but small limbs, the presacral count is ca. 28, and the pleurocentra are large and reached ventrally almost as far as the intercentrum. The new taxon nests within Dvinosauria above the trimerorhachid clade and <i>Erpetosaurus</i>, at the base of the broad-skulled dvinosauroids. <i>Trypanognathus</i> occurs in a tetrapod fauna that closely resembles early Permian assemblages of western North America, with which it shares sphenacodontid and edaphosaurid synapsids, as well as eryopid temnospondyls.
DOI: 10.6073/pasta/b1a8c851a2340d3395bee11b361e59f9
title: High-frequency sensor data collected by Stroud Water Research Center in a meadow reach of White Clay Creek from February 2016 through December 2016

description: High-frequency sensor data from a YSI 600 OMS Optical Monitoring System (every 15 minutes) and Sontek IQ (every 10 minutes) in a meadow reach at White Clay Creek from February through December 2016. Funded by NSF and DEB as part of the LTREB grant to study the recovery of stream ecosystem structure and function during reforestation, Stroud Water Research Center. The parameters in this data package are water temperature, depth, turbidity, conductivity, specific conductance, water pressure, discharge, rivers ection area, and velocity. Data are presented in four tables which likely have significant overlap. The raw data table presents the data exactly as it was downloaded from the Aquarius Database. It is formatted as a "wide" human-readable table. IQ_stream and YSI_stream present only the data from the respective sensors. These tables are gapfilled so that there are no time gaps. Formatted as a "wide" human-readable table. The full_stream table is all of the data, raw and cleaned, from both sensors. It is organized as a long, tidy table and is optimal for machine readability. All of the parameters and table are further explained in the metadata.
DOI: 10.6084/m9.figshare.7982696.v2
title: A dvinosaurian temnospondyl from the Carboniferous-Permian boundary of Germany sheds light on dvinosaurian phylogeny and distribution

description: A complete skull and well-preserved postcranium of a dvinosaurian temnospondyl from the Carboniferous-Permian boundary of Germany is referred to a new genus and species, <i>Trypanognathus remigiusbergensis</i>. The skull closely resembles that of the early Permian dvinosaurian genus <i>Trimerorhachis</i> in outline and suture topology, but the occiput and the palate differ substantially. Derived states are the penetration of vomerine tusks through the splenial and symphyseal tusks through the premaxilla. <i>Trypanognathus</i> shares with dvinosauroids the lack of a squamosal embayment, an elongated basipterygoid process, a foreshortened palatine ramus exclusively reaching the ectopterygoid, the absence of pterygoid denticles, and enlarged palatal tusks. The body is elongate with well-ossified, but small limbs, the presacral count is ca. 28, and the pleurocentra are large and reached ventrally almost as far as the intercentrum. The new taxon nests within Dvinosauria above the trimerorhachid clade and <i>Erpetosaurus</i>, at the base of the broad-skulled dvinosauroids. <i>Trypanognathus</i> occurs in a tetrapod fauna that closely resembles early Permian assemblages of western North America, with which it shares sphenacodontid and edaphosaurid synapsids, as well as eryopid temnospondyls.
DOI: 10.6084/m9.figshare.7982696.v1
title: A dvinosaurian temnospondyl from the Carboniferous-Permian boundary of Germany sheds light on dvinosaurian phylogeny and distribution

description: A complete skull and well-preserved postcranium of a dvinosaurian temnospondyl from the Carboniferous-Permian boundary of Germany is referred to a new genus and species, <i>Trypanognathus remigiusbergensis</i>. The skull closely resembles that of the early Permian dvinosaurian genus <i>Trimerorhachis</i> in outline and suture topology, but the occiput and the palate differ substantially. Derived states are the penetration of vomerine tusks through the splenial and symphyseal tusks through the premaxilla. <i>Trypanognathus</i> shares with dvinosauroids the lack of a squamosal embayment, an elongated basipterygoid process, a foreshortened palatine ramus exclusively reaching the ectopterygoid, the absence of pterygoid denticles, and enlarged palatal tusks. The body is elongate with well-ossified, but small limbs, the presacral count is ca. 28, and the pleurocentra are large and reached ventrally almost as far as the intercentrum. The new taxon nests within Dvinosauria above the trimerorhachid clade and <i>Erpetosaurus</i>, at the base of the broad-skulled dvinosauroids. <i>Trypanognathus</i> occurs in a tetrapod fauna that closely resembles early Permian assemblages of western North America, with which it shares sphenacodontid and edaphosaurid synapsids, as well as eryopid temnospondyls.
DOI: 10.6084/m9.figshare.7982642
title: Study questionnaire. 04-10-2019. docx.docx

description: Study questionnaire and database<br>
DOI: 10.6084/m9.figshare.7982642.v2
title: Study questionnaire. 04-10-2019. docx.docx

description: Study questionnaire and database<br>
DOI: 10.6084/m9.figshare.7982642.v1
title: Study questionnaire. 04-10-2019. docx.docx

description: Study questionnaire and database<br>
DOI: 10.6084/m9.figshare.7982483
title: Plant seeds dispersed by red deer in Denmark

description: Raw data on seed dispersal by red deer in Denmark. Columns represent plant species, rows represent sampled animals, and the number indicate how many seeds/diaspores were found for each sample/spexies combination at four different sampling sites, within three zoochorous dispersal routes.
DOI: 10.6084/m9.figshare.7982483.v1
title: Plant seeds dispersed by red deer in Denmark

description: Raw data on seed dispersal by red deer in Denmark. Columns represent plant species, rows represent sampled animals, and the number indicate how many seeds/diaspores were found for each sample/spexies combination at four different sampling sites, within three zoochorous dispersal routes.
DOI: 10.6084/m9.figshare.12874470.v1
title: Additional file of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

description: Additional file of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance
DOI: 10.6084/m9.figshare.12874470.v2
title: Additional file of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

description: Additional file of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance
DOI: 10.6084/m9.figshare.12874470.v13
title: Additional file of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

description: Additional file of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance
DOI: 10.6084/m9.figshare.12874413
title: Additional file 10 of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

description: Additional file 10:NGEN assembly contigs. (FAS 19 MB)
DOI: 10.6084/m9.figshare.12874416
title: Additional file 11 of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

description: Additional file 11:Meta-assembly contigs. (ZIP 7 MB)
DOI: 10.6084/m9.figshare.12874413.v1
title: Additional file 10 of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

description: Additional file 10:NGEN assembly contigs. (FAS 19 MB)
DOI: 10.6084/m9.figshare.12874416.v1
title: Additional file 11 of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

description: Additional file 11:Meta-assembly contigs. (ZIP 7 MB)
DOI: 10.6084/m9.figshare.12874449.v1
title: Additional file 3 of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

description: Additional file 3:Microsatellite repeat motifs obtained from NGEN contigs. List with NGEN contigs containing di-, tri-, tetra-, penta-repeat motives with a minimum repeat length of six, contig ID, repeat type, size, position and contig sequence. (XLS 528 KB)
DOI: 10.6084/m9.figshare.12874461.v1
title: Additional file 7 of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

description: Additional file 7:VELVET assembly contigs. (ZIP 10 MB)
DOI: 10.6084/m9.figshare.12874464
title: Additional file 8 of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

description: Additional file 8:OASES k mer-21 assembly contigs. (FAS 14 MB)
DOI: 10.6084/m9.figshare.12874467
title: Additional file 9 of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

description: Additional file 9:OASES k mer-31 assembly contigs. (FAS 13 MB)
DOI: 10.6084/m9.figshare.12874461
title: Additional file 7 of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

description: Additional file 7:VELVET assembly contigs. (ZIP 10 MB)
DOI: 10.6084/m9.figshare.12874470.v19
title: Additional file of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

description: Additional file of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance
DOI: 10.6084/m9.figshare.12874464.v1
title: Additional file 8 of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

description: Additional file 8:OASES k mer-21 assembly contigs. (FAS 14 MB)
DOI: 10.6084/m9.figshare.12874467.v1
title: Additional file 9 of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

description: Additional file 9:OASES k mer-31 assembly contigs. (FAS 13 MB)
DOI: 10.6084/m9.figshare.12874470
title: Additional file of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

description: Additional file of Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance