cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17271350
title: Operando Strain Analysis of Electrodes Using Internal Sensors and Holistic Electrochemical-Microstructural Modeling: experimental data and DFN (PyBaMM) parameter set

description: Hello,

you will find here the raw data and DFN parameter set for the publication "Operando Strain Analysis of Electrodes Using Internal Sensors and Holistic Electrochemical-Microstructural Modeling".

The electric, FBG and temperature data for each cell (Ce1, Ce2 and Ce3) are organised as follows:



The electrical cycling and FBG data for the experiments at C/3 and C/20 are included in a single data file with a shared time axis.

The experimental data for 1 C cycle is distributed as per cell because channel boosting was required.


For the time period between the calibrations, refer to Table 1 in the publication or use the time stamp of the time-series given in the ISO 8601 format (yyyy-mm-ddTHH:MM:SS).

Each set contains time-series data for each (U, I) of the cycling unit, the Bragg wavelength of the FBG sensors (as described in the publication CeX_cen or CeX_out) and the temperatures of the type K temperature sensors on the cells (T_Ce1, T_Ce2 and T_Ce3). The ambient temperature is set to 25 °C using the Binder KB110 climate chamber for all experiments.

The Doyle Fuller Newman model parameter set was used within the PyBaMM modelling framework (ver. 25.1.1) and is provided here. Efforts are being made to release it within the PyBaMM ecosystem.

General hints:



Sign convention for the current: positive values (I>0) corresspond to discharging the battery cell.

Only raw data is provided without filtering or restriction of the data range.


Best regards

André Hebenbrock
DOI: 10.5281/zenodo.17271351
title: Operando Strain Analysis of Electrodes Using Internal Sensors and Holistic Electrochemical-Microstructural Modeling: experimental data and DFN (PyBaMM) parameter set

description: Hello,

you will find here the raw data and DFN parameter set for the publication "Operando Strain Analysis of Electrodes Using Internal Sensors and Holistic Electrochemical-Microstructural Modeling".

The electric, FBG and temperature data for each cell (Ce1, Ce2 and Ce3) are organised as follows:



The electrical cycling and FBG data for the experiments at C/3 and C/20 are included in a single data file with a shared time axis.

The experimental data for 1 C cycle is distributed as per cell because channel boosting was required.


For the time period between the calibrations, refer to Table 1 in the publication or use the time stamp of the time-series given in the ISO 8601 format (yyyy-mm-ddTHH:MM:SS).

Each set contains time-series data for each (U, I) of the cycling unit, the Bragg wavelength of the FBG sensors (as described in the publication CeX_cen or CeX_out) and the temperatures of the type K temperature sensors on the cells (T_Ce1, T_Ce2 and T_Ce3). The ambient temperature is set to 25 °C using the Binder KB110 climate chamber for all experiments.

The Doyle Fuller Newman model parameter set was used within the PyBaMM modelling framework (ver. 25.1.1) and is provided here. Efforts are being made to release it within the PyBaMM ecosystem.

General hints:



Sign convention for the current: positive values (I>0) corresspond to discharging the battery cell.

Only raw data is provided without filtering or restriction of the data range.


Best regards

André Hebenbrock
DOI: 10.15468/dl.pnhus8
title: Occurrence Download

description: A dataset containing 641 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chorizema aciculare",
 "HasCoordinate is true"
 ]
}

 The dataset includes 641 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015364-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7p3h7p
title: Occurrence Download

description: A dataset containing 72145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to -0.914722",
 "DecimalLatitude is less than or equal to 4.085278",
 "DecimalLongitude is greater than or equal to -60.0",
 "DecimalLongitude is less than or equal to -55.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 72145 records from 179 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015349-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.46fttu
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chondrosum eriopodum",
 "HasCoordinate is true"
 ]
}

 The dataset includes 29 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015365-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30737888
title: Practical dataset for single-cell large models [Immune s1]

description: This dataset currently consists of four single-cell datasets, categorized into three main types: kidney disease queue, immune cell queue, and multimodal tissue.<br><br>Can be used for testing and training large single-cell biological models.<br><br><b>This data serves as a supplement to the following (10.6084/m9.figshare.30736412)</b>Immune cell queue, 9730K+ cells, scRNA only<br>
DOI: 10.6084/m9.figshare.30737888.v1
title: Practical dataset for single-cell large models [Immune s1]

description: This dataset currently consists of four single-cell datasets, categorized into three main types: kidney disease queue, immune cell queue, and multimodal tissue.<br><br>Can be used for testing and training large single-cell biological models.<br><br><b>This data serves as a supplement to the following (10.6084/m9.figshare.30736412)</b>Immune cell queue, 9730K+ cells, scRNA only<br>
DOI: 10.60707/x5j5-9m02
title: SEM EDX olivine analyses in OREX-800088-10
DOI: 10.15468/dl.hqrh8q
title: Occurrence Download

description: A dataset containing 185 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chondrosum gracile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 185 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015366-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gz4y7a
title: Occurrence Download

description: A dataset containing 733 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chrysocoma coma-aurea",
 "HasCoordinate is true"
 ]
}

 The dataset includes 733 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015367-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17761222
title: Observation simulation data
DOI: 10.5281/zenodo.17761221
title: Observation simulation data
DOI: 10.6084/m9.figshare.28854617
title: <b>Original Data</b>

description: The data is used to construct ditch connectivity. It mainly includes fence data, ditch data, land use data and the boundary of the study area.
DOI: 10.6084/m9.figshare.28854617.v3
title: <b>Original Data</b>

description: The data is used to construct ditch connectivity. It mainly includes fence data, ditch data, land use data and the boundary of the study area.
DOI: 10.6084/m9.figshare.28854617.v2
title: <b>Original Data</b> (<b>Study on the possible diffusion paths of TN and TP considering the network connectivity of ditches and barriers</b>)

description: This data is used to construct ditch connectivity, and the network data set is constructed with the ratio of ditch connectivity to length as the weight. The network service scope analysis model is used to analyze the possible diffusion paths of TN and TP and their impact on wetland ecological restoration. It mainly includes barrier data, ditch data, land use data and study area boundary.
DOI: 10.15468/dl.tr2fz5
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "TaxonKey is Loriculus galgulus"
 ]
}

 The dataset includes 35 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015370-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6xsqtb
title: Occurrence Download

description: A dataset containing 1202246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Haliaeetus leucocephalus, Hirundo rustica)",
 "Country is Canada",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON ((-84.76571 41.22334, -58.93394 41.22334, -58.93394 49.85477, -84.76571 49.85477, -84.76571 41.22334))",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 1202246 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015359-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17761286
title: Diabetes and its complications research dataset

description: The data in this study were derived from the de-identified follow-up dataset of diabetes patients in the Department of Diabetes and Endocrinology at the Sixth People's Hospital Affiliated to Shanghai Jiao Tong University from February 2012 to April 2012.The dataset encompasses demographic and clinical characteristics of diabetic patients, including fundamental traits and obesity indices, with a focus on their correlations and mechanistic impacts on diabetes onset. Detailed demographic information and basic physiological profiles of diabetic patients are provided in the Appendix. This dataset enables in-depth analysis of the specific effects of glycemic status, lipid profiles, insulin levels, as well as hepatic, renal, and hematologic parameters, integrated with disease history, lifestyle factors, complication profiles, and genetic predispositions, on the development and progression of diabetes mellitus.  Furthermore, it facilitates investigations into associations between diabetes and retinopathy, patient awareness of diabetes, and treatment adherence.

Special Note: The dataset is stored in the data folder(v8).
DOI: 10.34740/kaggle/dsv/13918741
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.pc7cvs
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.28_1",
 "TaxonKey is Astragalus depauperatus"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015374-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qvpv6j
title: Occurrence Download

description: A dataset listing the 10 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((73.65893 50.42109,72.72862 50.3166,71.96214 49.8586,72.74617 49.33526,73.97489 49.86237,74.47807 50.37261,73.65893 50.42109))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Diptera",
 "Year 2015-2025"
 ]
}

 The dataset's 10 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015369-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2f2f7f
title: Occurrence Download

description: A dataset containing 37302 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Histrionicus histrionicus, Oceanodroma leucorhoa)",
 "Country is Canada",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON ((-84.76571 41.22334, -58.93394 41.22334, -58.93394 49.85477, -84.76571 49.85477, -84.76571 41.22334))",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 37302 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015377-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.69f6jt
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.28_1",
 "TaxonKey is Astragalus dilutus"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015379-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17760396
title: Designing minimal E. coli genomes using variational autoencoders

description: Data associated with the manuscript: https://www.biorxiv.org/content/10.1101/2024.03.08.584160v2

Using a pangenome dataset for Escherichia coli, we explore how generation of minimal genomes can be achieved using variational autoencoders. Our results show that variational autoencoders can successfully create minimised genomes retaining the essential genes identified in the literature. 

data.tgz : Input data for the preprocessing, model fitting, and genome minimization



F4_complete_presence_absence.csv



Horesh et. al. 2021: https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000499



accessionID_phylogroup_BD.csv



Horesh et. al. 2021: https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000499



essential_genes



Goodall et. al. 2018: https://journals.asm.org/doi/10.1128/mbio.02096-17



GCF_000005845.2.gbff



E. coli MG1655 wildtype sequence
DOI: 10.5281/zenodo.17760395
title: Designing minimal E. coli genomes using variational autoencoders

description: Data associated with the manuscript: https://www.biorxiv.org/content/10.1101/2024.03.08.584160v2

Using a pangenome dataset for Escherichia coli, we explore how generation of minimal genomes can be achieved using variational autoencoders. Our results show that variational autoencoders can successfully create minimised genomes retaining the essential genes identified in the literature. 

data.tgz : Input data for the preprocessing, model fitting, and genome minimization



F4_complete_presence_absence.csv



Horesh et. al. 2021: https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000499



accessionID_phylogroup_BD.csv



Horesh et. al. 2021: https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000499



essential_genes



Goodall et. al. 2018: https://journals.asm.org/doi/10.1128/mbio.02096-17



GCF_000005845.2.gbff



E. coli MG1655 wildtype sequence
DOI: 10.15468/dl.w2utye
title: Occurrence Download

description: A dataset containing 100761 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 4.085278",
 "DecimalLatitude is less than or equal to 9.085278",
 "DecimalLongitude is greater than or equal to -60.0",
 "DecimalLongitude is less than or equal to -55.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 100761 records from 163 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015373-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kdm648
title: Occurrence Download

description: A dataset containing 1423 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is India",
 "OccurrenceStatus is Present",
 "TaxonKey is Bos gaurus C.H.Smith, 1827"
 ]
}

 The dataset includes 1423 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002740-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qyedya
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-76.32002648620697 -10.268579096300776,-74.12744731973704 -10.268579096300776,-74.12744731973704 -8.07599992983085,-76.32002648620697 -8.07599992983085,-76.32002648620697 -10.268579096300776))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pristimantis reichlei Padial & De la Riva, 2009"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037062-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngwqhg
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Glyptothorax cavia (Hamilton, 1822)",
 "Country is India"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006162-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhx2vk
title: Occurrence Download

description: A dataset containing 510 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Draba altaica (C.A.Mey.) Bunge",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 510 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0322223-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.etsouc
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crassicorophium bonelli (H.Milne Edwards, 1830)",
 "Geometry POLYGON((9.73 60.32,9.73 72.60,64.83 72.60,64.83 60.32,9.73 60.32))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006162-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xk4fry
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cromidon corrigioloides (Rolfe) Compton"
 ]
}

 The dataset includes 25 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010410-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.frerec
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epidendrum suborbiculare Schltr."
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161917-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b67kma
title: Occurrence Download

description: A dataset containing 1037 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arachis duranensis Krapov. & W.C.Greg."
 ]
}

 The dataset includes 1037 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0294328-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wsjbbp
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ricinus communis f. pruinosus Müll.Arg."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006162-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfpvsn
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alysicarpus naikianus Pokle"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002772-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmjjx3
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Occurrence of mammalia relicts at site Trafalgar Square"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005952-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.evybdy
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Triturus viridescens Rafinesque, 1820"
 ]
}

 The dataset includes 96 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006162-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3srn2f
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Eutriorchis astur Sharpe, 1875"
 ]
}

 The dataset includes 35 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000643-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.