cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1359860.v1
title: Self-Organisation in Spatial Systems − From Fractal Chaos to Regular Patterns and Vice Versa

description: Fig.6c
DOI: 10.6084/m9.figshare.1359873.v1
title: Gaussian Job Archive for C13H24AlLiO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1359858
title: Self-Organisation in Spatial Systems − From Fractal Chaos to Regular Patterns and Vice Versa

description: Fig.6b
DOI: 10.6084/m9.figshare.1359855
title: Self-Organisation in Spatial Systems − From Fractal Chaos to Regular Patterns and Vice Versa

description: Fig 1c
DOI: 10.6084/m9.figshare.1359856
title: Self-Organisation in Spatial Systems − From Fractal Chaos to Regular Patterns and Vice Versa

description: Fig1a
DOI: 10.6084/m9.figshare.1359854
title: Self-Organisation in Spatial Systems − From Fractal Chaos to Regular Patterns and Vice Versa

description: Fig 1b - red line
DOI: 10.6084/m9.figshare.1359856.v1
title: Self-Organisation in Spatial Systems − From Fractal Chaos to Regular Patterns and Vice Versa

description: Fig1a
DOI: 10.6084/m9.figshare.1359857
title: Self-Organisation in Spatial Systems − From Fractal Chaos to Regular Patterns and Vice Versa

description: Fig7b
DOI: 10.6084/m9.figshare.1359852
title: Self-Organisation in Spatial Systems − From Fractal Chaos to Regular Patterns and Vice Versa

description: Fig. 1b - blue line
DOI: 10.6084/m9.figshare.1359853
title: Self-Organisation in Spatial Systems − From Fractal Chaos to Regular Patterns and Vice Versa

description: Fig 1b green line
DOI: 10.6084/m9.figshare.1359854.v1
title: Self-Organisation in Spatial Systems − From Fractal Chaos to Regular Patterns and Vice Versa

description: Fig 1b - red line
DOI: 10.6084/m9.figshare.1359855.v1
title: Self-Organisation in Spatial Systems − From Fractal Chaos to Regular Patterns and Vice Versa

description: Fig 1c
DOI: 10.6084/m9.figshare.1359857.v1
title: Self-Organisation in Spatial Systems − From Fractal Chaos to Regular Patterns and Vice Versa

description: Fig7b
DOI: 10.6084/m9.figshare.1359851
title: Self-Organisation in Spatial Systems − From Fractal Chaos to Regular Patterns and Vice Versa

description: Fig.3
DOI: 10.6084/m9.figshare.1359850
title: Self-Organisation in Spatial Systems − From Fractal Chaos to Regular Patterns and Vice Versa

description: Fig.5
DOI: 10.6084/m9.figshare.1359852.v1
title: Self-Organisation in Spatial Systems − From Fractal Chaos to Regular Patterns and Vice Versa

description: Fig. 1b - blue line
DOI: 10.6084/m9.figshare.1359851.v1
title: Self-Organisation in Spatial Systems − From Fractal Chaos to Regular Patterns and Vice Versa

description: Fig.3
DOI: 10.6084/m9.figshare.1359802
title: Gaussian Job Archive for C13H24AlLiO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1359803
title: Gaussian Job Archive for C9H12AlLiO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1359850.v1
title: Self-Organisation in Spatial Systems − From Fractal Chaos to Regular Patterns and Vice Versa

description: Fig.5
DOI: 10.6084/m9.figshare.1359853.v1
title: http://dx.doi.org/10.6084/m9.figshare.1359855

description: Fig 1b green line
DOI: 10.6084/m9.figshare.1359801
title: PLOS ONE Data: EMG linear envelopes for the five muscles between experimental conditions.

description: The data link to the article B. Hwang, et al., "An Optimal Method for Specific Lower Limb Muscle Group Training Using an Exoskeletal Robot", PLOS ONE (submitted) Experinental results (Fig 7) - EMG linear envelope for 3 subjects, 10 trials, 5 muscles, two different resistance gains (C75, C75_opt).
DOI: 10.6084/m9.figshare.1359802.v1
title: Gaussian Job Archive for C13H24AlLiO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1358092
title: Gene expression analysis of native and invasive populations Centaurea diffusa under control and drought treatments

description: Mixed effects model analysis of gene expression for native and invasive populations of Centaurea diffusa (diffuse knapweed) in control and drought treatments, from three time points. From unpublished chapter of dissertation, contact me. Transcriptomes and array described in Lai et al., Am J Bot, 2012. Table S2: Results from likelihood ratio tests for genes with significant model terms. LRTs are reported for each fixed effect term in mixed effect models of gene expression, for all 11,047 genes with at least one significant fixed effect (α=0.05). Q values corrected for multiple comparisons are reported for each LRT. TAIR 10 accessions (The Arabidopsis Information Resource; arabidopsis.org) and GO term mappings are included where possible.
DOI: 10.6084/m9.figshare.1359803.v1
title: Gaussian Job Archive for C9H12AlLiO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1359800
title: PLOS ONE Data: Simulation results

description: The data link to the article B. Hwang, et al., "An Optimal Method for Specific Lower Limb Muscle Group Training Using an Exoskeletal Robot", PLOS ONE (submitted) Simulation results (Fig 5 & 6) 1) Muscle force for the four constant gain vectors (F40, F75, F110, F150; Figure 5E) 2) Muscle force for the four optimal gain vectors (F40_opt, F75_opt, F110_opt, F150_opt) 3) Joint kinematics (Fig 5B) (Joint_kinematics) 4) Optimized gain vectors (Figure 6) (C40_opt, C75_opt, C110_opt, C150_opt)
DOI: 10.6084/m9.figshare.1359801.v1
title: PLOS ONE Data: EMG linear envelopes for the five muscles between experimental conditions.

description: The data link to the article B. Hwang, et al., "An Optimal Method for Specific Lower Limb Muscle Group Training Using an Exoskeletal Robot", PLOS ONE (submitted) Experinental results (Fig 7) - EMG linear envelope for 3 subjects, 10 trials, 5 muscles, two different resistance gains (C75, C75_opt).
DOI: 10.6084/m9.figshare.1358065
title: Tsimane Amazonian Panel Study

description: Panel study over 9 years, 2002-2010, with 400 households, and 14 villages in Bolivian farming foraging society. See sublimentary documents for detailed descriptions.
DOI: 10.6084/m9.figshare.1358092.v1
title: Gene expression analysis of native and invasive populations Centaurea diffusa under control and drought treatments

description: Mixed effects model analysis of gene expression for native and invasive populations of Centaurea diffusa (diffuse knapweed) in control and drought treatments, from three time points. From unpublished chapter of dissertation, contact me. Transcriptomes and array described in Lai et al., Am J Bot, 2012. Table S2: Results from likelihood ratio tests for genes with significant model terms. LRTs are reported for each fixed effect term in mixed effect models of gene expression, for all 11,047 genes with at least one significant fixed effect (α=0.05). Q values corrected for multiple comparisons are reported for each LRT. TAIR 10 accessions (The Arabidopsis Information Resource; arabidopsis.org) and GO term mappings are included where possible.
DOI: 10.6084/m9.figshare.1358064
title: Tsimane Amazonian Panel Studies

description: Panel study over 9 years, 2002-2010, with 400 households, and 14 villages in Bolivian farming foraging society. See sublimentary documents for detailed descriptions.
DOI: 10.6084/m9.figshare.1358063
title: Tsimane' Amazonian Panel Studies

description: Panel study over 9 years, 2002-2010, with 400 households, and 14 villages in Bolivian farming foraging society. See sublimentary documents for detailed descriptions.
DOI: 10.6084/m9.figshare.1359800.v2
title: PLOS ONE Data: Simulation results

description: The data link to the article B. Hwang, et al., "An Optimal Method for Specific Lower Limb Muscle Group Training Using an Exoskeletal Robot", PLOS ONE (submitted) Simulation results (Fig 5 & 6) 1) Muscle force for the four constant gain vectors (F40, F75, F110, F150; Figure 5E) 2) Muscle force for the four optimal gain vectors (F40_opt, F75_opt, F110_opt, F150_opt) 3) Joint kinematics (Fig 5B) (Joint_kinematics) 4) Optimized gain vectors (Figure 6) (C40_opt, C75_opt, C110_opt, C150_opt)
DOI: 10.6084/m9.figshare.1358062
title: Tsimane Amazonian Panel Studies

description: Panel study over 9 years, 2002-2010, with 400 households, and 14 villages in Bolivian farming foraging society. See sublimentary documents for detailed descriptions.
DOI: 10.6084/m9.figshare.1358064.v1
title: Tsimane Amazonian Panel Studies

description: Panel study over 9 years, 2002-2010, with 400 households, and 14 villages in Bolivian farming foraging society. See sublimentary documents for detailed descriptions.
DOI: 10.6084/m9.figshare.1358040
title: The loss of Tm7sf gene accelerates skin papilloma formation in mice

description: The 3b-hydroxysterol D14-reductase, encoded by the Tm7sf2 gene, is an enzyme involved in cholesterol biosynthesis. Cholesterol and its derivatives control epidermal barrier integrity and are protective against environmental insults. To determine the role of the gene in skin cholesterol homeostasis, we applied 12-o-tetradecanoylphorbol-13-acetate (TPA) to the skin of Tm7sf21/1 and Tm7sf2-/- mice. TPA increased<br>skin cholesterol levels by inducing de novo synthesis and up-take only in Tm7sf21/1 mouse, confirming that<br>the gene maintains cholesterol homeostasis under stress conditions. Cholesterol sulfate, one of the major<br>players in skin permeability, was doubled by TPA treatment in the skin of wild-type animals but this<br>response was lost in Tm7sf2-/- mice. The expression of markers of epidermal differentiation concomitant<br>with farnesoid-X-receptor and p38 MAPK activation were also disrupted in Tm7sf2-/- mice. We then<br>subjected Tm7sf21/1 and Tm7sf2-/- mice to a classical two-stage skin carcinogenesis protocol. We found that the loss of Tm7sf2 increased incidence and multiplicity of skin papillomas. Interestingly, the null genotype showed reduced expression of nur77, a gene associated with resistance to neoplastic transformation. In conclusion, the loss of Tm7sf2 alters the expression of proteins involved in epidermal differentiation by reducing the levels of cholesterol sulfate.
DOI: 10.6084/m9.figshare.1359800.v1
title: PLOS ONE Data: EMG linear envelopes for the five muscles between experimental conditions.

description: The data link to the article B. Hwang, et al., "An Optimal Method for Specific Lower Limb Muscle Group Training Using an Exoskeletal Robot", PLOS ONE (submitted) Experinental results (Fig 7) - EMG linear envelope for 3 subjects, 10 trials, 5 muscles, two different resistance gains (C75, C75_opt).
DOI: 10.6084/m9.figshare.1358062.v1
title: Tsimane Amazonian Panel Studies

description: Panel study over 9 years, 2002-2010, with 400 households, and 14 villages in Bolivian farming foraging society. See sublimentary documents for detailed descriptions.
DOI: 10.6084/m9.figshare.1358065.v1
title: Tsimane' Amazonian Panel Study

description: Panel study over 9 years, 2002-2010, with 400 households, and 14 villages in Bolivian farming foraging society. See sublimentary documents for detailed descriptions.
DOI: 10.6084/m9.figshare.1358040.v1
title: The loss of Tm7sf gene accelerates skin papilloma formation in mice

description: The 3b-hydroxysterol D14-reductase, encoded by the Tm7sf2 gene, is an enzyme involved in cholesterol biosynthesis. Cholesterol and its derivatives control epidermal barrier integrity and are protective against environmental insults. To determine the role of the gene in skin cholesterol homeostasis, we applied 12-o-tetradecanoylphorbol-13-acetate (TPA) to the skin of Tm7sf21/1 and Tm7sf2-/- mice. TPA increased<br>skin cholesterol levels by inducing de novo synthesis and up-take only in Tm7sf21/1 mouse, confirming that<br>the gene maintains cholesterol homeostasis under stress conditions. Cholesterol sulfate, one of the major<br>players in skin permeability, was doubled by TPA treatment in the skin of wild-type animals but this<br>response was lost in Tm7sf2-/- mice. The expression of markers of epidermal differentiation concomitant<br>with farnesoid-X-receptor and p38 MAPK activation were also disrupted in Tm7sf2-/- mice. We then<br>subjected Tm7sf21/1 and Tm7sf2-/- mice to a classical two-stage skin carcinogenesis protocol. We found that the loss of Tm7sf2 increased incidence and multiplicity of skin papillomas. Interestingly, the null genotype showed reduced expression of nur77, a gene associated with resistance to neoplastic transformation. In conclusion, the loss of Tm7sf2 alters the expression of proteins involved in epidermal differentiation by reducing the levels of cholesterol sulfate.
DOI: 10.6084/m9.figshare.1357993
title: Ig-like fold

description: Multiple sequence alignement and MIR/FOD data
DOI: 10.6084/m9.figshare.1358035
title: Flav fold

description: Multiple sequence alignement and MIR/FOD data
DOI: 10.6084/m9.figshare.1357993.v1
title: Ig-like fold

description: Multiple sequence alignement and MIR/FOD data
DOI: 10.6084/m9.figshare.1357930
title: Gaussian Job Archive for C13H24AlLiO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1357917
title: Bayes Factors Matlab functions

description: A set of Matlab functions to calculate simple Bayes Factors. Based on the work of Jeff Rouder and EJ Wagenmakers.
DOI: 10.6084/m9.figshare.1357930.v1
title: Gaussian Job Archive for C13H24AlLiO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1358035.v2
title: Flav fold

description: Multiple sequence alignement and MIR/FOD data
DOI: 10.6084/m9.figshare.1358035.v1
title: Flav fold

description: Multiple sequence alignement and MIR/FOD data
DOI: 10.6084/m9.figshare.1356347
title: EnHD data

description: X-ray scattering data collected for Engrailed Homeodomain proten (61 residue), at four different temperatures t = 20C, 30C, 40C and 55C.<br>Scattering spectra were fitted structures obtained from molecular dynamics simulations. Experimental data was interpreted used ensemble optimization method applying genetic algorithm. Other details could be found in REDME file.
DOI: 10.6084/m9.figshare.1356347.v1
title: EnHD data

description: X-ray scattering data collected for Engrailed Homeodomain proten (61 residue), at four different temperatures t = 20C, 30C, 40C and 55C.<br>Scattering spectra were fitted structures obtained from molecular dynamics simulations. Experimental data was interpreted used ensemble optimization method applying genetic algorithm. Other details could be found in REDME file.
DOI: 10.6084/m9.figshare.1356328
title: Rhesus Macaque Concept Learning Figures

description: Figures for "Concept Learning of Ecological and Artificial Stimuli in Rhesus Macaques" by Altschul, Jensen, & Terrace (PeerJ PrePrints)
DOI: 10.6084/m9.figshare.1356328.v1
title: Rhesus Macaque Concept Learning Figures

description: Figures for "Concept Learning of Ecological and Artificial Stimuli in Rhesus Macaques" by Altschul, Jensen, & Terrace (PeerJ PrePrints)
DOI: 10.6084/m9.figshare.1356308
title: Preprint Figures from "Implicit value updating explains transitive inference performance: The betasort model"

description: Figures from "Implicit value updating explains transitive inference performance: The betasort model" https://peerj.com/preprints/954/ Updated versions of these figure appear in Jensen et al. (2015) "Implicit value updating explains transitive inference performance: The betasort model," PLOS Computational Biology, 11, e1004523.
DOI: 10.6084/m9.figshare.1356308.v2
title: Preprint Figures from "Implicit value updating explains transitive inference performance: The betasort model"

description: Figures from "Implicit value updating explains transitive inference performance: The betasort model" https://peerj.com/preprints/954/ Updated versions of these figure appear in Jensen et al. (2015) "Implicit value updating explains transitive inference performance: The betasort model," PLOS Computational Biology, 11, e1004523.
DOI: 10.6084/m9.figshare.1356308.v1
title: betasort

description: Figures from "Implicit value updating explains transitive inference performance: The betasort model"
DOI: 10.6084/m9.figshare.1356287
title: Synthetic reads from Stapleton et al. 2015

description: Synthetic long reads assembled from barcoded short reads as described in Stapleton et al. 2015
DOI: 10.6084/m9.figshare.1356186
title: Global dataset

description: Global dataset: see the related paper (pre-print on <strong>bioRxiv</strong> doi: http://dx.doi.org/10.1101/016493 ) for further details and the samples_geographic_coordinates file in the same fileset. This is the output of export_sql.pl function from the Stacks package allowing for up to 50% missing individuals per locus and between 1 and 10 SNPs per locus. To be filtered according to your criteria. Samples included: NAM05 MOZ01 SAF05 SAF12 SAF13 SAF17 SAF19 SAF20 SAF22 SWZ01 ZAM02 SEN03 ETH01 ETH03 BUF02 TAN01 TUN07 COI02 COI01 EGI04 MOR04 LRM02 LRM04 CCO01 MOL01 SIC01 HX205 LOM01 TOS02 LVI01 LLA02 SIC03 TRN01 PIE02 TOS03 LLA01 EMR02 EGI05 NIG01
DOI: 10.6084/m9.figshare.1356185
title: Invasive dataset

description: Invasive dataset: see the related paper (pre-print on <strong>bioRxiv</strong> doi: http://dx.doi.org/10.1101/016493 ) for further details and the samples_geographic_coordinates file in the same fileset. This is the output of export_sql.pl function from the Stacks package allowing for up to 50% missing individuals per locus and between 1 and 10 SNPs per locus. To be filtered according to your criteria. Samples included: MSM01 LRI01 MOL01 MOR04 EMR01 PIE02 TRN01 SSC01 LOM01 PIE01 EGI04 LRM04 LLA02 LVI02 LLA01 CCO01 TPO01 LVI01 LRM05 LRM01 MOL02 EMR02 PUG01 LRM02 LRM03 MSM02 LIG02 HX205 HX189 ITA02 ITA03 ITA05 ITA06 ITA07 ITA09 MAR02 SIC01 SIC03 TOS03 TOS02 TUN07
DOI: 10.6084/m9.figshare.1356184
title: Invasive reduced dataset

description: Invasive reduced dataset: see the related paper (pre-print on <strong>bioRxiv</strong> doi: http://dx.doi.org/10.1101/016493 ) for further details and the samples_geographic_coordinates file in the same fileset. This is the output of export_sql.pl function from the Stacks package allowing for up to 50% missing individuals per locus and between 1 and 10 SNPs per locus. To be filtered according to your criteria. Samples included: CCO01 EMR02 HX205 LLA01 LLA02 LOM01 LRM02 LRM04 LVI01 MOL01 PIE02 SIC01 SIC03 TOS02 TOS03 TRN01
DOI: 10.6084/m9.figshare.1356185.v1
title: Invasive dataset

description: Invasive dataset: see the related paper (pre-print on <strong>bioRxiv</strong> doi: http://dx.doi.org/10.1101/016493 ) for further details and the samples_geographic_coordinates file in the same fileset. This is the output of export_sql.pl function from the Stacks package allowing for up to 50% missing individuals per locus and between 1 and 10 SNPs per locus. To be filtered according to your criteria. Samples included: MSM01 LRI01 MOL01 MOR04 EMR01 PIE02 TRN01 SSC01 LOM01 PIE01 EGI04 LRM04 LLA02 LVI02 LLA01 CCO01 TPO01 LVI01 LRM05 LRM01 MOL02 EMR02 PUG01 LRM02 LRM03 MSM02 LIG02 HX205 HX189 ITA02 ITA03 ITA05 ITA06 ITA07 ITA09 MAR02 SIC01 SIC03 TOS03 TOS02 TUN07
DOI: 10.6084/m9.figshare.1356186.v1
title: Global dataset

description: Global dataset: see the related paper (pre-print on <strong>bioRxiv</strong> doi: http://dx.doi.org/10.1101/016493 ) for further details and the samples_geographic_coordinates file in the same fileset. This is the output of export_sql.pl function from the Stacks package allowing for up to 50% missing individuals per locus and between 1 and 10 SNPs per locus. To be filtered according to your criteria. Samples included: NAM05 MOZ01 SAF05 SAF12 SAF13 SAF17 SAF19 SAF20 SAF22 SWZ01 ZAM02 SEN03 ETH01 ETH03 BUF02 TAN01 TUN07 COI02 COI01 EGI04 MOR04 LRM02 LRM04 CCO01 MOL01 SIC01 HX205 LOM01 TOS02 LVI01 LLA02 SIC03 TRN01 PIE02 TOS03 LLA01 EMR02 EGI05 NIG01
DOI: 10.6084/m9.figshare.1356287.v1
title: Synthetic reads from Stapleton et al. 2015

description: Synthetic long reads assembled from barcoded short reads as described in Stapleton et al. 2015
DOI: 10.6084/m9.figshare.1356175
title: SPC tornado data

description: SPC historic tornado data (1950-2013)
DOI: 10.6084/m9.figshare.1356170
title: NBT_correspondence

description: Supplementary materials for "Network link prediction: Silence on the relevant literature and errors in implementation"
DOI: 10.6084/m9.figshare.1356173
title: Samples geographic coordinates

description: Geographic location of the samples analyzed in the related paper (pre-print on <strong>bioRxiv</strong> doi: http://dx.doi.org/10.1101/016493 ).
DOI: 10.6084/m9.figshare.1356174
title: Long live the alien: studying the fate of the genomic diversity along the long-term dynamics of an extremely successful invader, the crested porcupine.

description: Pre-print version of the paper is available on <strong>bioRxiv</strong> (doi: http://dx.doi.org/10.1101/016493 ) <strong>Abstract</strong> Describing long-term evolutionary trajectories of alien species is a fundamental, although rarely possible, step to understand the pivotal drivers of successful invasions. Here, we tackled this task by investigating the genetic structure of the crested porcupine (Hystrix cristata), whose invasion of Italy started about 1500 years ago. Using genome-wide RAD markers, we explored the demographic processes that shaped, and are shaping, the gene pool of the expanding invasive populations and compared their genetic diversity with that of native and invasive populations of both African porcupine species (crested and Cape, H. africaeaustralis). Through coalescence-based demographic reconstructions, we demonstrated that bottleneck at introduction was mild and did not severely affect the reservoir of genetic diversity. Our data also highlighted a marked geographic structure in the invasive populations, indicating that they are likely the results of multiple introduction events. Nevertheless, both the invasive populations and its source show a lower level of diversity relative to other native populations from Sub-Saharan and South Africa, suggesting that demographic history before introduction may have played a role in forging a successful invader. Finally, we showed that the current spatial expansion at the northern boundary of the range is following a leading-edge model characterized by a general reduction of genetic diversity towards the edge of the expanding range. Consistently, random fixation of alleles through gene-surfing seems a more likely explanation than adaptive divergence for the distribution of the few outlier loci with highly divergent frequencies between core and newly colonized areas.
DOI: 10.6084/m9.figshare.1356173.v1
title: Samples geographic coordinates

description: Geographic location of the samples analyzed in the related paper (pre-print on <strong>bioRxiv</strong> doi: http://dx.doi.org/10.1101/016493 ).
DOI: 10.6084/m9.figshare.1356167
title: Supplementary Item for Figure S2

description: Supplementary Item for Figure S2 of "Network link prediction: Silence on the relevant literature and errors in implementation"
DOI: 10.6084/m9.figshare.1356168
title: Supplementary Item for Fig S3

description: Supplementary Item for Fig S3 of "Network link prediction: Silence on the relevant literature and errors in implementation"