cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.k8wm5b
title: Occurrence Download

description: A dataset containing 32270 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-202.33276 -64.57615,-101.85337 -64.57615,-101.85337 -24.36640,-202.33276 -24.36640,-202.33276 -64.57615))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Celmisia"
 ]
}

 The dataset includes 32270 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000671-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.2hk46
title: Data from: Overcompensation and phase effects in a cyclic common vole population: between first and second-order cycles

description: 1. Population cycles in voles are often thought to be generated by
 one-year delayed density-dependence on the annual population growth rate.
 In common voles, however, it has been suggested by Turchin (2003) that
 some populations exhibit first-order cycles, resulting from strong
 overcompensation (i.e. carrying capacity overshoots in peak years, with
 only an effect of the current year abundance on annual growth rates). 2.
 We focus on a common vole (Microtus arvalis) population from western
 France, that exhibits 3-year cycles. Several overcompensating nonlinear
 models for populations dynamics are fitted to the data, notably those of
 Hassell, and Maynard-Smith and Slatkin. 3. Overcompensating direct
 density-dependence (DD) provides a satisfactory description of winter
 crashes, and one-year delayed density-dependence is not responsible for
 the crashes, thus these are not classical second-order cycles. A
 phase-driven modulation of direct density-dependence maintains a
 low-phase, explaining why the cycles last three years instead of two. Our
 analyses suggest that some of this phase-dependence can be expressed as
 one-year delayed DD, but phase-dependence provides a better description.
 Hence modelling suggests that cycles in this population are first-order
 cycles with a low phase after peaks, rather than fully second-order
 cycles. 4. However, based on the popular log-linear second-order
 autoregressive model, we would conclude only that negative delayed
 density-dependence exists. The additive structure of this model cannot
 show when delayed DD occurs (here, during lows rather than peaks). Our
 analyses thus call into question the automated use of second-order
 log-linear models, and suggests that more attention should be given to
 non-(log)linear models when studying cyclic populations. 5. From a
 biological viewpoint, the fast crashes through overcompensation that we
 found suggest they might be caused by parasites or food rather than
 predators, though predators might have a role in maintaining the low phase
 and spatial synchrony.
description: Barraquand Pinot et al.
 JAE Overcompensation and phase effects in a cyclic vole
 2014Vole abundance data and
 computer codes, in both R and Matlab, to reproduce the results presented
 in the main text and SI.
DOI: 10.5061/dryad.0k90t
title: Data from: Neonatal activation of the xenobiotic-sensors PXR and CAR results in acute and persistent down-regulation of PPARα-signaling in mouse liver

description: Safety concerns have emerged regarding the potential long-lasting effects
 due to developmental exposure to xenobiotics. The pregnane X receptor
 (PXR) and constitutive androstane receptor (CAR) are critical
 xenobiotic-sensing nuclear receptors that are highly expressed in liver.
 The goal of this study was to test our hypothesis that neonatal exposure
 to PXR- or CAR-activators not only acutely but also persistently regulates
 the expression of drug-processing genes (DPGs). A single dose of the
 PXR-ligand PCN (75 mg/kg), CAR-ligand TCPOBOP (3 mg/kg), or vehicle (corn
 oil) was administered intraperitoneally to 3-day-old neonatal wild-type
 mice. Livers were collected 24 h post-dose or from adult mice at 60 days
 of age, and global gene expression of these mice was determined using
 Affymetrix Mouse Transcriptome Assay 1.0. In neonatal liver, PCN
 up-regulated 464 and down-regulated 449 genes, whereas TCPOBOP
 up-regulated 308 and down-regulated 112 genes. In adult liver, there were
 15 persistently up-regulated and 22 persistently down-regulated genes
 following neonatal exposure to PCN, as well as 130 persistently
 up-regulated and 18 persistently down-regulated genes following neonatal
 exposure to TCPOBOP. Neonatal exposure to both PCN and TCPOBOP
 persistently down-regulated multiple Cyp4a members, which are
 prototypical-target genes of the lipid-sensor PPARα, and this correlated
 with decreased PPARα-binding to the Cyp4a gene loci. RT-qPCR, western
 blotting, and enzyme activity assays in livers of wild-type, PXR-null, and
 CAR-null mice confirmed that the persistent down-regulation of Cyp4a was
 PXR and CAR dependent. In conclusion, neonatal exposure to PXR- and
 CAR-activators both acutely and persistently regulates critical genes
 involved in xenobiotic and lipid metabolism in liver.
description: Transcriptome profiles
 in mouse liverC57BL/6J mice were
 administered with corn oil, TCPOBOP, PCN at 3-day-old age, the livers were
 collected after 24 hours or at 60-day-old age. This excel data sheet
 contains 18 columns. Three biological replicates for each treatment. The
 row contains all the transcripts.Microarray_console_excel
 sheet.xlsxCEL
 filesThis zip file contains
 18 CEL files, named with the ages (3-day-old and 60-day-old) and
 treatments (corn oil [CO], TCPOBOP, PCN).
DOI: 10.5061/dryad.6t536
title: Data from: Body odour disgust sensitivity predicts authoritarian attitudes

description: Authoritarianism has resurfaced as a research topic in political
 psychology, as it appears relevant to explain current political trends.
 Authoritarian attitudes have been consistently linked to feelings of
 disgust, an emotion that is thought to have evolved to protect the
 organism from contamination. We hypothesized that body odour disgust
 sensitivity (BODS) might be associated with authoritarianism, as
 chemo-signalling is a primitive system for regulating interpersonal
 contact and disease avoidance, which are key features also in
 authoritarianism. We used well-validated scales for measuring BODS,
 authoritarianism and related constructs. Across two studies, we found that
 BODS is positively related to authoritarianism. In a third study, we
 showed a positive association between BODS scores and support for Donald
 Trump, who, at the time of data collection, was a presidential candidate
 with an agenda described as resonating with authoritarian attitudes.
 Authoritarianism fully explained the positive association between BODS and
 support for Donald Trump. Our findings highlight body odour disgust as a
 new and promising domain in political psychology research.
 Authoritarianism and BODS might be part of the same disease avoidance
 framework, and our results contribute to the growing evidence that
 contemporary social attitudes might be rooted in basic sensory functions.
description: Body odor disgust
 sensitivity predicts authoritarian attitudes and support for Donald Trump
  The
 README provides a codebook containing information about each of the
 variables in the dataset.Study1_rawRaw data from study 1Study2_rawRaw data from study 2Study3_rawRaw data from study 3
DOI: 10.5061/dryad.6b7c1
title: Data from: Posterior predictive Bayesian phylogenetic model selection

description: We present two distinctly different posterior predictive approaches to
 Bayesian phylogenetic model selection, and illustrate these methods using
 examples from green algal protein-coding cpDNA sequences and flowering
 plant rDNA sequences. The Gelfand-Ghosh (GG) approach allows dissection of
 an overall measure of model fit into components due to posterior
 predictive variance (Pm) and goodness-of-fit (Gm), which distinguishes
 this method from the posterior predictive P-value approach. The
 conditional predictive ordinate (CPO) method provides a site-specific
 measure of model fit useful for exploratory analyses and can be combined
 over sites yielding the log pseudomarginal likelihood (LPML), which is
 useful as an overall measure of model fit. CPO provides a useful
 cross-validation approach that is computationally efficient, requiring
 only a sample from the posterior distribution (no additional simulation is
 required). Both GG and CPO add new perspectives to Bayesian phylogenetic
 model selection based on the predictive abilities of models, and
 complement the perspective provided by the marginal likelihood (including
 Bayes Factor comparisons) based solely on the fit of competing models to
 observed data.
description: angiosperm-rps11Subset of data obtained under Supplementary Figure 3 from: http://www.nature.com/nature/journal/v424/n6945/suppinfo/nature01743.htmlsphaero_psaBExtracted from: http://treebase.org/ study id 11663sphaero-4geneExtracted from: http://treebase.org/ study id 11663
DOI: 10.5061/dryad.j0v43
title: Data from: Wind exposure and light exposure, more than elevation-related temperature, limit tree line seedling abundance on three continents

description: The transition from seedlings into trees at alpine treelines is a
 temperature-limited process that ultimately sets the treeline elevation at
 a global scale. As such, treelines may be key bioassays of global warming
 effects on species distributions. For global warming to promote upward
 treeline migration, as predicted, seedlings must be available. We
 examined, for the first time at a global scale, elevational patterns and
 drivers of seedling availability at treelines. Working at 10 sites across
 five mountain regions, (dry Andes, humid Andes, Patagonian Andes, Swiss
 Alps, and US Rocky Mountains) with different treeline forms (abrupt and
 diffuse) and dominated by different tree species (broadleaves and
 conifers), we answered the following question: how is seedling abundance
 affected by elevation (as a coarse grain-surrogate of temperature), light
 exposure (openness immediately above plots) or wind exposure (an index for
 openness in the horizontal direction), or combinations thereof and, what
 is the relative importance of each factor? We tested five biological
 hypotheses to determine the relative strength of these treeline drivers on
 variable-size sampling plots of seedling abundance (S) (N = 1056).
 Specifically, we tested likely combinations of temperature limitation (T),
 light as a resource (light, L) and as a radiation stress (via high light
 at low temperature, R), wind exposure as a treeline stressor (W) and
 treeline form (a coarse scale test: abrupt vs. diffuse, D). We found
 strong, moderate, and weak negative effects of our estimates of wind
 exposure, radiation stress, and elevation-related temperature on seedling
 abundance, respectively. We also found a positive effect, at treeline, for
 site-level treeline diffuseness. Two distinct facilitation mechanisms
 likely improved seedling abundance at treeline elevation: wind blockage by
 neighbourhood trees (the sheltering effect) and partial shading by
 overhead trees. Synthesis. Seedling abundance at alpine treelines is
 limited by multiple simultaneous factors with the temperature-decrease
 with elevation playing a relatively minor role. We therefore note that if
 the temperature threshold limiting the conversion from seedlings to adult
 trees is relaxed because of global warming, upward treeline migration will
 depend on the availability of shelter sites for seedlings.
description: RegenerationFinalData file with seedling abundance records arranged by site, elevation and X-Y coordinates.
DOI: 10.5061/dryad.p6df410
title: Data from: Is there indirect selection on female extra-pair reproduction through cross-sex genetic correlations with male reproductive fitness?

description: One key hypothesis explaining the evolution and persistence of polyandry,
 and resulting female extra-pair reproduction in socially monogamous
 systems, is that female propensity for extra-pair reproduction is
 positively genetically correlated with male reproductive fitness and
 consequently experiences positive cross-sex indirect selection. However,
 key genetic correlations have rarely been estimated, especially in
 free-living populations experiencing natural (co)variation in reproductive
 strategies and fitness. We used long-term life-history and pedigree data
 from song sparrows (Melospiza melodia) to estimate the cross-sex genetic
 correlation between female propensity for extra-pair reproduction and
 adult male lifetime reproductive success, and thereby test a key
 hypothesis regarding mating system evolution. There was substantial
 additive genetic variance in both traits, providing substantial potential
 for indirect selection on female reproductive strategy. However, the
 cross-sex genetic correlation was estimated to be close to zero. Such
 small correlations might arise because male reproductive success achieved
 through extra-pair paternity was strongly positively genetically
 correlated with success achieved through within-pair paternity, implying
 that the same successful males commonly sire offspring produced by
 polyandrous and monogamous females. Cross-sex indirect selection may
 consequently have limited capacity to drive evolution of female extra-pair
 reproduction, or hence underlying polyandry, in systems where multiple
 routes to paternity success exist.
description: Phenotypic data for
 analysis of female EPR and male LRSPhenotypic data for
 analysis of female extra-pair reproduction and male lifetime reproductive
 successlrs.data.Dryad.Final.txtPhenotypic data for analysis of female EPR and male ARSPhenotypic data for analysis of female extra-pair reproduction and male annual reproductive successars.data.Dryad.Final.txtInverse A data for analysis of female EPR and male LRSInverse A data for animal model analysis of female extra-pair reproduction and male lifetime reproductive successlrs.Ainv.Dryad.txtInverse A data for analysis of female EPR and male ARSInverse A data for animal model analysis of female extra-pair reproduction and male annual reproductive successars.Ainv.Dryad.txt
DOI: 10.5061/dryad.b999q
title: Data from: Mother-offspring distances reflect sex differences in fine-scale genetic structure of eastern grey kangaroos

description: Natal dispersal affects life history and population biology and causes
 gene flow. In mammals, dispersal is usually male-biased so that females
 tend to be philopatric and surrounded by matrilineal kin, which may lead
 to preferential associations among female kin. Here we combine genetic
 analyses and behavioral observations to investigate spatial genetic
 structure and sex-biased dispersal patterns in a high-density population
 of mammals showing fission–fusion group dynamics. We studied eastern grey
 kangaroos (Macropus giganteus) over 2 years at Wilsons Promontory National
 Park, Australia, and found weak fine-scale genetic structure among adult
 females in both years but no structure among adult males. Immature male
 kangaroos moved away from their mothers at 18–25 months of age, while
 immature females remained near their mothers until older. A higher
 proportion of male (34%) than female (6%) subadults and young adults were
 observed to disperse, although median distances of detected dispersals
 were similar for both sexes. Adult females had overlapping ranges that
 were far wider than the maximum extent of spatial genetic structure found.
 Female kangaroos, although weakly philopatric, mostly encounter
 nonrelatives in fission–fusion groups at high density, and therefore
 kinship is unlikely to strongly affect sociality.
description: genotypes and mean x, y
 coordinates for adult kangaroos by sex each yearGenotypes were assessed
 in GeneMapper 4.1. Each line represents an individual. Sex 1 = male, Sex 2
 = female. Year 1 = 2010-2011, Year 2 = 2011-2012, Both Years =
 2010-2012.genotypes
 Dryad.xlsxdistances between
 mothers and young of different ages and sexesEach line represents a
 mother-young pair for a certain age period. Period 1 = 10-13 months,
 Period 2 = 14-17 months, Period 3 = 18-21 months, Period 4 = 22-25 months,
 Period 5 = 26-29 months, Period 6 = 30-33 months, Period 7 = 34-37 months,
 Period 8 = 38-41 months. Young and Mother refer to individuals but are not
 the tag numbers. Sex 1 = male, Sex 2 = female. Year 1 = 2010-2011, Year 2
 = 2011-2012. Distance Mother Moved is from the previous age
 period.mother-young distances
 Dryad.xlsxrange sizes of 95% and
 50% kernels for different sex-age classesSizes of kernels were
 calculated in Ranges8 v. 2.5. Each line represents an individual. Width
 refers to the distance between the two outermost points of
 kernels.kernel sizes
 Dryad.xlsxknown dispersers with
 sex, age and distance movedEach line represents an
 individual. Sex 1 = male, Sex 2 = female. Cohort 2007 = born 2006/2007,
 Cohort 2008 = born 2007/2008, Cohort 2009 = born 2008/2009. Age last seen
 = age when last seen on study area.dispersers
 Dryad.xlsx
DOI: 10.5061/dryad.4n4j1
title: Data from: PopART: full-feature software for haplotype network construction

description: 1. Haplotype networks are an intuitive method for visualising
 relationships between individual genotypes at the population level. 2.
 Here, we present popart, an integrated software package that provides a
 comprehensive implementation of haplotype network methods, phylogeographic
 visualisation tools and standard statistical tests, together with
 publication-ready figure production. 3. popart also provides a platform
 for the implementation and distribution of new network-based methods – we
 describe one such new method, integer neighbour-joining. 4. The software
 is open source and freely available for all major operating systems.
description: PopART
 sourcesSnapshot of sources
 archived from GitHub on 12 May 2015.PopART manual
 (epub)popart.epubPopART manual (PDF)popart.pdf
DOI: 10.5061/dryad.13328
title: Data from: Food availability modulates differences in parental effort between dispersing and philopatric birds

description: Dispersal entails costs and might have to be traded off against other
 life-history traits. Dispersing and philopatric individuals may thus
 exhibit alternative life-history strategies. Importantly, these
 differences could also partly be modulated by environmental variation. Our
 previous results in a patchy population of a small passerine, the collared
 flycatcher, suggest that, as breeding density, a proxy of habitat quality,
 decreases, dispersing individuals invest less in reproduction but maintain
 a stable oxidative balance, whereas philopatric individuals maintain a
 high reproductive investment at the expense of increased oxidative stress.
 In this study, we aimed at experimentally testing whether these observed
 differences between dispersing and philopatric individuals across a
 habitat quality gradient were due to food availability, a major component
 of habitat quality in this system. We provided additional food for the
 parents to use during the nestling rearing period and we measured
 subsequent parental reproductive effort (through provisioning rate, adult
 body mass, and plasmatic markers of oxidative balance) and reproductive
 output. Density-dependent differences between dispersing and philopatric
 parents in body mass and fledging success were observed in control nests
 but not in supplemented nests. However, density-dependent differences in
 oxidative state were not altered by the supplementation. Altogether, our
 results support our hypothesis that food availability is responsible for
 some of the density-dependent differences observed in our population
 between dispersing and philopatric individuals but other mechanisms are
 also at play. Our study further emphasizes the need to account for
 environmental variation when studying the association between dispersal
 and other traits.
description: dataset adults
 2014These data describe
 physiological responses of Collared flycatchers Ficedula hypoleuca to
 breeding density and food supplementation depending on their dispersal
 status.dataset adults from
 control nests 2012-2013-2014These data describe the
 temporal variation in the physiological responses of Collared flycatchers
 Ficedula hypoleuca to breeding density and food supplementation depending
 on their dispersal status, over three years.dataset nestlings
 2014These data describe
 reproductive responses of Collared flycatchers Ficedula hypoleuca to
 breeding density and food supplementation depending on their dispersal
 status.dataset nestlings from
 control nests 2012-2013-2014These data describe the
 temporal variation in the reproductive responses of Collared flycatchers
 Ficedula hypoleuca to breeding density and food supplementation depending
 on their dispersal status, over three years.
DOI: 10.5061/dryad.db451
title: Data from: Ecological divergence combined with ancient allopatry in lizard populations from a small volcanic island

description: Population divergence and speciation are often explained by geographical
 isolation, but may also be possible under high gene flow due to strong
 ecology-related differences in selection pressures. This study combines
 coalescent analyses of genetic data (11 microsatellite loci and 1 Kbp of
 mtDNA) and ecological modelling to examine the relative contributions of
 isolation and ecology to incipient speciation in the scincid lizard
 Chalcides sexlineatus within the volcanic island of Gran Canaria. Bayesian
 multispecies coalescent dating of within-island genetic divergence of
 northern and southern populations showed correspondence with the timing of
 volcanic activity in the north of the island 1.5-3.0 Ma ago. Coalescent
 estimates of demographic changes reveal historical size increases in
 northern populations, consistent with expansions from a volcanic refuge.
 Nevertheless, ecological divergence is also supported. First, species
 distribution modelling shows that the northern morph is associated with
 mesic habitat types and the southern morph with xeric habitat types. It
 seems likely that the colour morphs are associated with different
 anti-predator strategies in the different habitats. Second, coalescent
 estimation of gene copy migration (based on microsatellites and mtDNA)
 suggest high rates from northern to southern morphs demonstrating the
 strength of ecology-mediated selection pressures that maintain the
 divergent southern morph. Together, these findings underline the
 complexity of the speciation process by providing evidence for the
 combined effects of ecological divergence and ancient divergence in
 allopatry.
description: Csex_genotyping_16Feb14Sequences_alignmentOccurrence_dataLongitude and latitude coordinates of the occurrence records used in building MaxEnt models of the two Chalcides sexlineatus populations (Northern morphology and Southern morphology)Selected_layersThe six selected climatic layers used in building MaxEnt models of the two Chalcides sexlineatus populations (Northern morphology and Southern morphology). An additional categorical variable-layer (Potential_vegetation) is provided