cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.pq161/3
title: Population Counts with Predictors

description: Pop.counts is a data frame stored in "Population Counts with Predictors.Rdata" containing stage specific counts from both sampling and counting populations.
*date*, *trt*, *pop.ID*, *density*, *supply*, *food*, *density.s*, *supply.s*, and *day* are the same as in the individual data in another file.
*pop.type* is the type of the population counting or sampling (see appendix S1 for details).
*eggtot*, *larvaetot*, *prottot*, and *trittot* are  are *4 times* the number of soil mites in a given stage (egg, larvae, protonymph, tritoonymph) counted in a quarter of the tube where the population was living (see appendix S1 for details). 
*maletot* and *femaletot* are the number of adult mites counted in the entire population (see appendix S1 for details).
DOI: 10.5061/dryad.rc63v/10
title: Malene Bay eukaryotes

description: Malene Bay, unmodified, showing eukaryotes. Data for Fig. 6. Data file 2015.03.25 10-10
DOI: 10.5061/dryad.rc63v/11
title: FourierMaskNuukData

description: Fourier mask for data sets.
DOI: 10.5061/dryad.rc63v/4
title: Brine at +4 C

description: Malene Bay brine kept overnight at +4 C with the addition of 1/2 strength 2216 marine medium. File 2015.03.30 05-28. Data for Figures 8F in paper and Video 8.
DOI: 10.5061/dryad.rc63v/5
title: Brine at -4C

description: Malene Bay brine kept overnight at -4 C with no additions. File 2015.03.28 08-11. Data for Figure 8D in paper and Video 6.
DOI: 10.5061/dryad.rc63v/6
title: Brine in situ

description: Brine in situ at Kobbefjord. No additives or treatments. Data file 2015.03.26 11-10. Data for Video 3.
DOI: 10.5061/dryad.rc63v/7
title: Brine in situ+serine

description: Kobbefjord brine + serine in situ. Data file 2015.03.26 11-16. Data for Fig. 8B.
DOI: 10.5061/dryad.rc63v/8
title: MB Brine + serine

description: Malene Bay brine + serine. Data file 2015.03.25 06-40. Data for Fig. 8 A, C and Videos 2 and 5.
DOI: 10.5061/dryad.rc63v/9
title: MB Brine in situ

description: Malene Bay brine, no treatments, recorded in situ. Data for Fig. 6 A. Data file 2015.03.27 10-46.
DOI: 10.5061/dryad.tc967/1
title: Mimulus cardinalis data from artificial selection experiment

description: This data file includes flowering time, specific leaf area, leaf nitrogen content, relative growth rate, and carbon isotope ratio for each Mimulus cardinalis individual in experiment (see publication for further details). Column names are as follows:Generation: year in which artificial selection was performed; parental generation (2012); 1 generation of selection (2013); 2 generations of selection (2014)Region: range position from which populations originate; northern edge (N), latitudinal range centre (C), or southern edge (S)Population: location from which individuals were collected (see Fig. 1 and Table 1 in publication)Line: artificial selection line; early flowering (early); unselected (control); late flowering (late)Population.Line: selection line nested within populationPar1: identity of parent 1 of each individual in 2013 and 2014 generations; used in calculations of weighted selection differentials Par2: identity of parent 2 of each individual in 2013 and 2014 generations; used in calculations of weighted selection differentials Family: full-sibling seed familyReplicate: replicates of each full-sibling seed family; only relevant in 2013 and 2014 generationsFamily.Replicate: replicate nested within full-sibling seed family; only relevant in 2013 and 2014 generationsFloweringTime: number of days from germination to first flowerSLA: specific leaf area (mm2/mg); only measured in 2014 generationpercent.N: percent leaf nitrogen content; only measured in 2014 generation on a subset of individualsRGR: relative growth rate in early seedling stem length (cm cm-1 day-1); only measured in 2014 generationdelta.13C: carbon isotope ratio (δ13C); only measured in 2014 generation on a subset of individuals
DOI: 10.5061/dryad.tc967/2
title: Mimulus cardinalis selected and unselected lines from artificial selection experiment

description: This data file includes unique IDs for the Mimulus cardinalis individuals selected for early flowering, late flowering, and unselected control lines in the 2012 and 2013 generations. Column names are as follows:Generation: year in which artificial selection was performed; parental generation (2012); 1 generation of selection (2013); 2 generations of selection (2014)Region: range position from which populations originate; northern edge (N), latitudinal range centre (C), or southern edge (S)Population: location from which individuals were collected (see Fig. 1 and Table 1 in publication)Line: artificial selection line; early flowering (early); unselected (control); late flowering (late)Population.Line: selection line nested within populationID: full-sibling seed family (in the case of data from the 2012 generation) or replicate nested within full-sibling seed family (in the case of data from the 2013 generation)FloweringTime: number of days from germination to first flower
DOI: 10.5061/dryad.tc967/3
title: Mimulus cardinalis data from artificial selection experiment based on a subset of C1 individuals

description: This data file includes flowering time, measured as number of days from germination to first flower, for each Mimulus cardinalis individual in artificial selection experiment based on a subset of individuals from the C1 population (see publication for further details). Column names are as follows:Generation: year in which artificial selection was performed; parental generation (2012); 1 generation of selection (2013); 2 generations of selection (2014)Line: artificial selection line; early flowering (early); unselected (control); late flowering (late)Family: full-sibling seed familyReplicate: replicates of each full-sibling seed family; only relevant in 2013 and 2014 generationsFamily.Replicate: replicate nested within full-sibling seed family; only relevant in 2013 and 2014 generationsFloweringTime: number of days from germination to first flower
DOI: 10.5061/dryad.tc967/4
title: Mimulus cardinalis selected and unselected lines from artificial selection experiment based on a subset of C1 individuals

description: This data file includes unique IDs for the Mimulus cardinalis individuals selected for early flowering, late flowering, and unselected control lines in the 2012 and 2013 generations. Data are derived from artificial selection experiment based on a subset of individuals from the C1 population (see publication for further details).Column names are as follows:Generation: year in which artificial selection was performed; parental generation (2012); 1 generation of selection (2013); 2 generations of selection (2014)Line: artificial selection line; early flowering (early); unselected (control); late flowering (late) ID: full-sibling seed family (in the case of data from the 2012 generation) or replicate nested within full-sibling seed family (in the case of data from the 2013 generation)FloweringTime: number of days from germination to first flower
DOI: 10.5061/dryad.ts705/1
title: Repeated measures data accompanying the paper: Effects of Increased Flight on the Energetics and Life History of the Butterfly Speyeria mormonia

description: Data are in microsoft excel .xlsx format.  Descriptions of each data type, including units, are in "comments" associated with the headers on each data column on each page.  Data were collected on the butterfly Speyeria mormonia, derived from a population in Gunnison County, Colorado, USA and raised in captivity at Stanford University.
DOI: 10.5061/dryad.0db3f/1
title: Alignement of the 18S sequences (all)

description: This is an alignment of all the 18S sequences in FASTA format.
DOI: 10.5061/dryad.0db3f/2
title: Alignement of the 18S sequences (after pruning)

description: This is an alignment of the 18S sequences after tree pruning step, in FASTA format.
DOI: 10.5061/dryad.0db3f/3
title: Taxonomic names of 18S sequences

description: This is a table that connects sequence IDs with taxonomic information (genus and species names).
DOI: 10.5061/dryad.0db3f/4
title: Alignement of the rbcL sequences (after pruning)

description: This is an alignment of the rbcL sequences after tree pruning step, in FASTA format.
DOI: 10.5061/dryad.0db3f/5
title: Alignement of the rbcL sequences (all)

description: This is an alignment of all the rbcL sequences in FASTA format.
DOI: 10.5061/dryad.0db3f/6
title: Taxonomic names of rbcL sequences

description: This is a table that connects sequence IDs with taxonomic information (genus and species names).
DOI: 10.5061/dryad.1br13/26
title: Suppl. Append. 1

description: DNA sequence data from GenBank.
DOI: 10.5061/dryad.1br13/27
title: Suppl. Append. 2

description: Scored character states and literature sources.
DOI: 10.5061/dryad.1br13/28
title: Suppl. Append. 3

description: Biogeographic models and model fit statistics. Results for (A) Gesneriaceae, (B) Gesnerioideae, and (C) Didymocarpoideae. Abbreviations: Par. = free parameters; lnLik = log-likelihood; AIC = Akaike Information Criterion; AICc = Akaike Information Criterion, corrected; ΔAICc = change in AICc; AICw = AIC weights; BIC = Bayesian Information Criterion; ΔBIC = change in BIC; DEC = Dispersal Extinction Cladogenesis model; DIVALIKE = BioGeoBEARS implementation of DIVA model; BAYAREALIKE = BioGeoBEARS implementation of BayArea model; s = subset sympatry; J = founder-event speciation.
DOI: 10.5061/dryad.1br13/29
title: Suppl. Append. 4

description: Summary of gene sequences used in the present study.
DOI: 10.5061/dryad.1br13/30
title: Suppl. Append. 5

description: Taxonomic comments and conclusions of the revised phylogenetic hypotheses for the Gesneriaceae.
DOI: 10.5061/dryad.1br13/31
title: Suppl. Append. 6

description: Stem and crown age estimates for Gesneriaceae clades and outgroups. For comparison, the ages of stems and crowns from Petrova et al. (2015), Perret et al. (2013), Woo et al. (2011), Bell et al. (2010), and Roalson et al. (2008) are provided. Estimation methods are indicated below reference names. Dates are indicated as Mean (Minimum, Maximum). Abbreviations: BEAST, Bayesian Evolutionary Analysis Sampling Trees; PL, penalized likelihood.
DOI: 10.5061/dryad.1br13/32
title: Suppl. Append. 7

description: GeoSSE model testing. Results for (A) Africa and Madagascar, (B) Temperate and Tropical Andes, (C) Amazon and Atlantic Brazil, (D) Caribbean and West Indies, and (E) Pacific and Southeast Asia. Gray boxes denote the model with the best-fit. Significance of constrained models versus unconstrained (full) model is assessed as follows: N.S., P&gt;0.1; *, P&lt;0.1; **, P&lt;0.05; ***, P&lt;0.001. Rate categories: λA, speciation in focal area (endemic species); λB, speciation in all other areas combined; λAB, speciation in widespread species; μA, extinction in focal area (endemic species); μB, extinction in all other areas combined; qA, dispersal out of focal area; qB, dispersal out of all other areas into focal area. Abbreviations: Df = degrees of freedom; lnLik = log-likelihood; AIC = Akaike Information Criterion; AICc = Akaike Information Criterion, corrected; ΔAICc = change in AICc; AICw = Akaike weights; LRT = likelihood ratio test; BIC = Bayesian Information Criterion; ΔBIC = change in BIC.
DOI: 10.5061/dryad.1br13/33
title: Suppl. Append. 8

description: SIMMAP ancestral character estimations of flower characters. Results for flower color in (A) Gesneriaceae, (B) Gesnerioideae, (C) Didymocarpoideae; corolla shape in (D) Gesneriaceae, (E) Gesnerioideae, (F) Didymocarpoideae; pollination syndrome (G) Gesneriaceae, (H) Gesnerioideae, (I) Didymocarpoideae.
DOI: 10.5061/dryad.2qb35/11
title: Male vocalization of X.kobeli; field ID number BJE3157

description: Male vocalization of X.kobeli; field ID number BJE3157
DOI: 10.5061/dryad.2qb35/12
title: Male vocalization of X. parafraseri; specimen ID CAS 249961

description: Male vocalization of X. parafraseri; specimen ID CAS 249961
DOI: 10.5061/dryad.2qb35/13
title: Male vocalization of X. mellotropicalis

description: Male vocalization of X. mellotropicalis; no specimen ID is associated with this recording.
DOI: 10.5061/dryad.2qb35/14
title: Male vocalization of X. calcaratus

description: Male vocalization of X. calcaratus; no specimen is associated with this recording.
DOI: 10.5061/dryad.343nd/8
title: Microsatellite Data for Myotis daubentonii faecal pellets

description: The zipped folder includes original consensus genotypes (cons_2Feb2015.txt), R commands to cluster individual bat haplotypes (Nautela_genotyping.R), and final genotypes (NautelaUniqueProfile_cons_2Feb2015_mismatch4.html).
DOI: 10.5061/dryad.38c1g.2/10.2
title: Scripts for simulating data under the eight models

description: This file contains the .est and .par input files used for simulating the genetic datasets used in this article. There are eight different couples of .est/.par files, each of them being associated to one of the eight models presented in the article. The event at 40,000 generations before present (i.e. all genes in the network were send back to an unique deme at this date, considering a backwards in time timeframe), was used to uniformize coalescence times across simulations and models. Please, check the readme file for additional guidance.
DOI: 10.5061/dryad.38c1g.2/11.2
title: Demes IDs, and equivalences article vs. scripts

description: (i) Figure representing the ID of demes in function of their spatial positioning in the network. This figure will help readers to assess to which deme corresponds each summary statistic provided in the simulated datasets shared in DRYAD. (ii) Table reporting the equivalences between the name of the parameters we used in the article and those we used in the .est and .par scripts we share in DRYAD (i.e., the scripts that were used to simulate genetic data with ABCSampler and SIMCOAL 2). We also report the description of the parameters and the prior parameter values we used.
DOI: 10.5061/dryad.38c1g.2/3.2
title: Simulated data from the colonization model

description: Parameter values and summary statistics for simulations generated under the colonization model
DOI: 10.5061/dryad.38c1g.2/4.2
title: Simulated data from the gene-flow / habitat model

description: Parameter values and summary statistics for simulations generated under the gene-flow / habitat model
DOI: 10.5061/dryad.38c1g.2/5.2
title: Simulated data from the gene-flow / colonization model

description: Parameter values and summary statistics for simulations generated under the gene-flow / colonization model
DOI: 10.5061/dryad.38c1g.2/6.2
title: Simulated data from the habitat / colonization model

description: Parameter values and summary statistics for simulations generated under the habitat / colonization model
DOI: 10.5061/dryad.38c1g.2/7.2
title: Simulated data from the gene-flow / habitat / colonization model

description: Parameter values and summary statistics for simulations generated under the gene-flow / habitat / colonization model
DOI: 10.5061/dryad.38c1g.2/8.2
title: Simulated data from the NULL model

description: Parameter values and summary statistics for simulations generated under the NULL model
DOI: 10.5061/dryad.38c1g.2/9.2
title: Scripts and data for meta-analyses

description: Scripts and data we used for performing the meta-analyses
DOI: 10.5061/dryad.467km/1
title: Reward_constancy_data

description: These data were collected in a behavioral experiment using 101 captive reared Bombus impatiens workers foraging on 'single species' arrays of artificial flowers that offer pollen and nectar as a reward.  Bees came from two colony diet treatments (limited and ample) and artificial flowers offered ~2mg of pollen and wither 2,4, or 8 ul of sucrose solution.  The amount of nectar and pollen load size of each bee are in the file, as well as the sequence of pollen and nectar collections.
DOI: 10.5061/dryad.4902q/10
title: 10_Aspeciosus_D-loop_Clade_IIabcd

description: The file is formatted for Arleqin and the sequences represent the four subgroups of clade II of the control region of Apodemus specious.
DOI: 10.5061/dryad.4902q/11
title: 11_Aargenteus_D-loop_I+II

description: The file is formatted for Arleqin and the sequences represent the clades I and II of the control region of Apodemus argenteus.
DOI: 10.5061/dryad.4902q/3
title: 3_Aargenteus_Cytb+D-loop_YSuzuki

description: The concatenated sequences of the mitochondrial controla region and cytochrome b gene of Apodemus argenteus used for the construction of the phylogenetic tree and network.
DOI: 10.5061/dryad.4902q/4
title: 4_Aspeciosus_D-loop_YSuzuki

description: The mitochondrial control region sequences of Apodemus specious used for the construction of the phylogenetic tree and network.
DOI: 10.5061/dryad.4902q/5
title: 5_Aspeciosus_Cytb_YSuzuki

description: The mitochondrial cytochrome b gene sequences of Apodemus specious used for the construction of the phylogenetic tree and network.
DOI: 10.5061/dryad.4902q/6
title: 6_Aspeciosus_Cytb+d-loop_YSuzuki

description: The concatenated sequences of the mitochondrial control region and cytochrome b gene of Apodemus specious used for the construction of the phylogenetic tree and network.
DOI: 10.5061/dryad.4902q/7
title: 7_Aargenteus_D-loop_Clade_I

description: The file is formatted for Arleqin and the sequences represent clade I of the control region of Apodemus argenteus.
DOI: 10.5061/dryad.4902q/8
title: 8_Aargenteus_D-loop_Clade_Ia-1+Ia-2

description: The file is formatted for Arleqin and the sequences represent clade Ia-1 and clade Ia-2 of the control region of Apodemus argenteus.
DOI: 10.5061/dryad.4902q/9
title: 9_Aargenteus_D-loop_Clade_Ia+II

description: The file is formatted for Arleqin and the sequences represent clade Ia-1 and clade II of the control region of Apodemus argenteus.
DOI: 10.5061/dryad.b2t22/1
title: cells

description: A .mat (MATLAB) file containing a database of electrophysiological results and recordings (spike times). Additional information is provided in the README file.
DOI: 10.5061/dryad.b2t22/2
title: samplePlots

description: Sample MATLAB code for generating figures from Tang et al 2015, Visual receptive field properties of neurons in the mouse dorsal lateral geniculate nucleus, PLoS One.
DOI: 10.5061/dryad.b6k1k/1
title: Set_AV: Single boosted regression tree (BRT) habitat models for 13 fish species based on assessed hydromorphological variables without topological variables

description: Results for single boosted regression tree (BRT) models for 13 fish species, 4 modelled distance classes (0, 200, 2500, 4000 m) and assessed hydromorphological data (AV) without topological variables. Model results include a global BRT model (brt.model.global, including all variables) and a final BRT model (brt.model.final, including only statistically relevant variables) for each species. Furthermore, summarizing statistics (brt.stats.final) for each final model (e.g. cross-validated AUC) and associated plots showing the influence of selected selected variables (species_response.pdf) are provided. Models are stored as R objects in the *.rds format and can be loaded with the R command readRDS().
DOI: 10.5061/dryad.b6k1k/2
title: Set_AV_TV: Single boosted regression tree (BRT) habitat models for 13 fish species based on assessed hydromorphological variables and topological variables

description: Results for single boosted regression tree (BRT) models for 13 fish species, 4 modelled distance classes (0, 200, 2500, 4000 m) and assessed hydromorphological data (AV) with topological variables (stream orders, distance from mouth). Model results include a global BRT model (brt.model.global, including all variables) and a final BRT model (brt.model.final, including only statistically relevant variables) for each species. Furthermore, summarizing statistics (brt.stats.final) for each final model (e.g. cross-validated AUC) and associated plots showing the influence of selected selected variables (species_response.pdf) are provided. Models are stored as R objects in the *.rds format and can be loaded with the R command readRDS().
DOI: 10.5061/dryad.b6k1k/3
title: Set_MV: Single boosted regression tree (BRT) habitat models for 13 fish species based on measured hydromorphological variables without topological variables

description: Results for single boosted regression tree (BRT) models for 13 fish species, 4 modelled distance classes (0, 200, 2500, 4000 m) and measured hydromorphological data (MV) without topological variables (stream orders, distance from mouth). Model results include a global BRT model (brt.model.global, including all variables) and a final BRT model (brt.model.final, including only statistically relevant variables) for each species. Furthermore, summarizing statistics (brt.stats.final) for each final model (e.g. cross-validated AUC) and associated plots showing the influence of selected selected variables (species_response.pdf) are provided. Models are stored as R objects in the *.rds format and can be loaded with the R command readRDS().
DOI: 10.5061/dryad.gg8g5/2
title: Motion data of hand during the daily grasping tasks
DOI: 10.5061/dryad.k21r5/1
title: Population Genomics Data for Bombus bifarius color pattern divergence

description: double digest radseq and rnaseq files for samples across a color pattern and spatial transect for the widespread western North American bumble bee, Bombus bifarius. The included ZIP file contains raw sequence data as well as data files used for analysis.
DOI: 10.5061/dryad.mk556/6
title: Table 1. Characteristics of placental MSCs after short-term storage at different temperature conditions

description: Data set for Table 1
DOI: 10.5061/dryad.mk556/7
title: Table 2. Cryopreservation of placental MSCs with various CPAs.

description: Data set for Table 2
DOI: 10.5061/dryad.mk556/8
title: Table 3. Cryopreservation of placental MSCs with various cryoprotective media.

description: Data set for Table 3
DOI: 10.5061/dryad.sb8h1/1
title: EmpiricalData

description: Raw empirical data, and the results of estimating phylogenetic trees from these data using MrBayes.
DOI: 10.5061/dryad.sb8h1/2
title: Simulations

description: Simulated data files, and the results of phylogenetic estimation from these data.
DOI: 10.5061/dryad.sb8h1/3
title: MrBayesBlocks

description: MrBayes instruction sets for each prior.
DOI: 10.5061/dryad.sb8h1/5
title: Spreadsheets

description: Processed data files used to make the figures in the paper.
DOI: 10.5061/dryad.sb8h1/6
title: README

description: Explains the content of various files.
DOI: 10.5061/dryad.sb8h1/7
title: Scripts

description: Scripts used for data generation and analysis.
DOI: 10.5061/dryad.t285m/1
title: ODdata Sheet1

description: OD data 1
DOI: 10.5061/dryad.t285m/2
title: ODdata Sheet2

description: OD data 2
DOI: 10.6084/m9.figshare.1053087.v1
title: UKSG eNews editorial June 2014
DOI: 10.5061/dryad.0db3f/10
title: Phylogenetic tree of diatoms (intersection data)

description: This is a phylogeny reconstructed by Maximum Likelihood with the intersection dataset.
DOI: 10.5061/dryad.0db3f/11
title: Diatoms ecological optima

description: This a table of ecological optima for 128 species of diatoms and 19 environmental parameters
DOI: 10.5061/dryad.0db3f/7
title: Alignement of the 18S and rbcL sequences (after union)

description: This is an alignment of the 18S and rbcL sequences after union step, in FASTA format.
DOI: 10.5061/dryad.0db3f/8
title: Alignement of the 18S and rbcL sequences (after intersection)

description: This is an alignment of the 18S and rbcL sequences after intersection step, in FASTA format.
DOI: 10.5061/dryad.0db3f/9
title: Phylogenetic tree of diatoms (union data)

description: This is a phylogeny reconstructed by Maximum Likelihood with the union dataset.
DOI: 10.5061/dryad.1br13/34
title: Suppl. Append. 9

description: SIMMAP ancestral character estimations of epiphytism and growth form characters. Results for Gesneriaceae for (A) epiphytism and (B) unifoliate growth form.