cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3640643_d6
title: Additional file 4: Tabular data 1. of Transcriptome profiling of drought responsive noncoding RNAs and their target genes in rice

description: Drought responsive genes and their expression patterns under well-watered and drought conditions. (XLSX 8528 kb)
DOI: 10.6084/m9.figshare.c.3640643_d7
title: Additional file 12: Table S5. of Transcriptome profiling of drought responsive noncoding RNAs and their target genes in rice

description: Primers used for real time-PCR and the stem-loop RT-PCR miRNA assay. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3640643_d8
title: Additional file 9: Table S4. of Transcriptome profiling of drought responsive noncoding RNAs and their target genes in rice

description: Drought responsive long noncoding RNAs with their neighboring genes and their expression patterns. (XLSX 67 kb)
DOI: 10.6084/m9.figshare.c.3640643_d10
title: Additional file 7: Table S2. of Transcriptome profiling of drought responsive noncoding RNAs and their target genes in rice

description: Drought responsive precursor miRNAs and their expression patterns under well-watered and drought conditions. 1 Bold in miRNAs ID, rice specific drought responsive miRNAs; 2 RPKM, Reads Per Kilobase of transcript per Million mapped reads; 3 C, control (well-watered conditions); 4 1d, drought treatment for 1 day; 5 2d, drought treatment for 2 days; 6 3d, drought treatment for 3 days; 7 log2 ratio, log2(drought treatment/control); 8 Species, red letter, up-regulation by drought; blue letter, down-regulation by drought; Abbreviations: At, Arabidopsis thaliana; Bd, Brachypodium distachyon; Gm, Glycine max; Hv, Hordeum vulgare; Mt, Medicago truncatula; Me, Manihot esculenta; Os, Oryza sativa; Pv, Phaseolus vulgaris; Peu, Populus euphratica; Ptc, Populus trichocarpa; Ppe, Prunus persica; Pto, Populus tomentosa; Td, Triticum dicoccoides; Tt, Triticum turgidum; Zm, Zea mays [10, 15]. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3640643_d9
title: Additional file 10: Tabular data 3. of Transcriptome profiling of drought responsive noncoding RNAs and their target genes in rice

description: List of drought responsive long noncoding RNAs (lncRNAs). (XLSX 529 kb)
DOI: 10.5281/zenodo.14454155
title: Supplementary Material: Stratigraphy and lithosedimentological properties of subplinian eruptions from Mt. Taranaki, New Zealand, encompassed by the Ngaere and Pungarehu edifice collapses.

description: This dataset contains location, thickness and largest pumice grain size information for site locations containing the Poto and Paetahi tephra formations across the Taranaki ring plain. This information was used to produce isopach and isopleth maps and tables for all twenty-eight subplinian events.
DOI: 10.5281/zenodo.14454156
title: Supplementary Material: Stratigraphy and lithosedimentological properties of subplinian eruptions from Mt. Taranaki, New Zealand, encompassed by the Ngaere and Pungarehu edifice collapses.

description: This dataset contains location, thickness and largest pumice grain size information for site locations containing the Poto and Paetahi tephra formations across the Taranaki ring plain. This information was used to produce isopach and isopleth maps and tables for all twenty-eight subplinian events.
DOI: 10.6084/m9.figshare.c.3640721_d2
title: Additional file 2: of Development and preliminary validation of a leadership competency instrument for existing and emerging allied health professional leaders

description: AHEAD Checklist and Resource Guides. (XLS 3787 kb)
DOI: 10.15468/dl.hxe3wv
title: Occurrence Download

description: A dataset containing 21744233 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 21744233 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033895-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3640766_d3
title: MOESM1 of Baseline susceptibility of different European lepidopteran and coleopteran pests to Bt proteins expressed in Bt maize: a systematic review

description: Additional file 1: Table S1. Categories of data extraction.
DOI: 10.6084/m9.figshare.c.3640766_d4
title: MOESM7 of Baseline susceptibility of different European lepidopteran and coleopteran pests to Bt proteins expressed in Bt maize: a systematic review

description: Additional file 7: Table S7. Study quality.
DOI: 10.6084/m9.figshare.c.3640766_d5
title: MOESM5 of Baseline susceptibility of different European lepidopteran and coleopteran pests to Bt proteins expressed in Bt maize: a systematic review

description: Additional file 5: Table S5. Articles after abstract screening.
DOI: 10.6084/m9.figshare.c.3640766_d6
title: MOESM2 of Baseline susceptibility of different European lepidopteran and coleopteran pests to Bt proteins expressed in Bt maize: a systematic review

description: Additional file 2: Table S2. All articles after combining searches.
DOI: 10.6084/m9.figshare.c.3640766_d7
title: MOESM6 of Baseline susceptibility of different European lepidopteran and coleopteran pests to Bt proteins expressed in Bt maize: a systematic review

description: Additional file 6: Table S6. Articles after full text screening.
DOI: 10.6084/m9.figshare.c.3640817_d3
title: MOESM5 of Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences

description: Additional file 5. GO enrichment analysis using the Cytoscape ClueGO plugin. The results of GO enrichment analyses were obtained using the overall list of LoF and deleterious missense variants for which no homozygous individual for the alternative allele was observed in our samples. The results for biological processes (BP), cellular components (CP) and molecular functions (MF) are in sheets 1, 2 and 3, respectively.
DOI: 10.6084/m9.figshare.c.3640817_d5
title: MOESM6 of Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences

description: Additional file 6. Frequency of the alternative allele of SNPs in our validation panel. (Sheet 1) Frequency of the alternative allele was calculated using the genotyping data obtained by genotyping all variants of our validation panel with the custom Illumina Bovine low-density BeadChip. Monomorphic variants (homozygous for the reference allele) in each breed are indicated by “0“. Missing genotyping data are indicated by “ng”. The numbers of observed types of genotype are in column 3 and coded as follows: (1) monomorphic variants; (2) and (3) correspond to the 276 polymorphic variants with (2) corresponding to the 51 variants for which no homozygous individual for the alternative allele was observed and (3) corresponding to variants for which we observed the three genotypes. (Sheet 2) Results of the exact binomial distribution test with event probability being set to zero (which corresponds to the number of observed homozygous individuals for the alternative allele), and n  was equal to the  number of animals in each breed (indicated between parenthesis). For the Simmental breed, we had only two genotyped animals and therefore we did not do the binomial distribution test.
DOI: 10.6084/m9.figshare.c.3640817_d6
title: MOESM7 of Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences

description: Additional file 7. Results of GO enrichment. GO enrichment analyses were performed using the MouseMine analysis tools and the results are summarized in sheets 1 and 2. Mammalian phenotype enrichment results are in sheet 1 and GO enrichment results in sheet 2.
DOI: 10.6084/m9.figshare.c.3640817_d7
title: MOESM2 of Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences

description: Additional file 2. Size distribution of small insertions and deletions identified by GATK. Total number of small insertions and deletions and their distribution by size are indicated.
DOI: 10.6084/m9.figshare.c.3640826_d1
title: Additional file 6: Table S5. of Medical implications of technical accuracy in genome sequencing

description: Multiple annotations with transcript evidence for five variants in ACMG genes detected in the NA12878 consensus standard dataset. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3640826_d3
title: Additional file 4: Table S3. of Medical implications of technical accuracy in genome sequencing

description: Sites with systematic errors prior to filtering that are present in ClinVar. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.c.3640826_d4
title: Additional file 2: Table S2. of Medical implications of technical accuracy in genome sequencing

description: The impact of filters on false positive and true positives in the high-confidence regions of the whole genome for Platypus WGS. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.c.3640826_d5
title: Additional file 5: Table S4. of Medical implications of technical accuracy in genome sequencing

description: A listing of pathogenic variants from ClinVar present in ExAC. (TXT 602 kb)
DOI: 10.6084/m9.figshare.c.3640826_d6
title: Additional file 1: Table S1. of Medical implications of technical accuracy in genome sequencing

description: Additional exome sequencing data for NA12878. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3640868_d1
title: Additional file 2: Table S2. of Creation of reference DNA barcode library and authentication of medicinal plant raw drugs used in Ayurvedic medicine

description: Name of the species, sample ID, field ID and the place of collection of the specimens of the plants that are listed in the API. (XLS 84 kb)
DOI: 10.6084/m9.figshare.c.3640868_d3
title: Additional file 3: Table S3. of Creation of reference DNA barcode library and authentication of medicinal plant raw drugs used in Ayurvedic medicine

description: Details of the rbcL sequences that were curated from NCBI and BOLD system. (XLS 23 kb)
DOI: 10.6084/m9.figshare.c.3640868_d4
title: Additional file 4: Table S4. of Creation of reference DNA barcode library and authentication of medicinal plant raw drugs used in Ayurvedic medicine

description: Details of the medicinal plant raw drugs collected and the outcome of authentication by DNA barcoding. (XLS 39 kb)
DOI: 10.6084/m9.figshare.c.3640883_d1
title: Additional file 3 of Insights on the virulence of swine respiratory tract mycoplasmas through genome-scale metabolic modeling

description: Abbreviation of metabolites and EC numbers from Figs. 3, 4 and 7. Spreadsheet containing the lists of all abbreviations and EC numbers used in Figs. 3 and 4 separately. (XLSX 22kb)
DOI: 10.6084/m9.figshare.c.3640883_d5
title: Additional file 5 of Insights on the virulence of swine respiratory tract mycoplasmas through genome-scale metabolic modeling

description: Models in SBML format. Compressed file (.zip) containing all SBML models from this work (.sbml). (ZIP 407 kb)
DOI: 10.6084/m9.figshare.c.3640883_d4
title: Additional file 1 of Insights on the virulence of swine respiratory tract mycoplasmas through genome-scale metabolic modeling

description: Supplementary Tables. Table S1. Defined media composition used for the cultivation of M. hyopneumoniae, M. hyorhinis and M. flocculare. Table S2. Complete list of reactions and metabolites from all models. Table S3. List of all metabolites included in the final biomass composition. Table S4. Distribution of GPR associations and exclusive GPR associations by metabolic pathways. Table S5. Proposition of correct precursors and cofactors for a new defined medium. Table S6. NMR metabolomics: Metabolites detected in the complex Friis and Yus+ media for the three swine mycoplasmas. Table S7. Prediction of essential reactions in the pan-network. Table S8. Differential metabolism overview. (XLSX 297 kb)
DOI: 10.6084/m9.figshare.c.3640889_d1
title: Additional file 5: Table S3. of A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70Â % rule

description: Annotations of top ten clusters with highest sequence identities for each taxonomic group. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.c.3640889_d4
title: Additional file 6: Table S4. of A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70Â % rule

description: Annotations of eukaryotic high-identity clades of putative plastid origin. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.c.3640889_d5
title: Additional file 1: Table S1. of A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70Â % rule

description: List of eukaryotic, bacterial, and archaeal taxa. (XLSX 197 kb)
DOI: 10.6084/m9.figshare.c.3640889_d8
title: Additional file 4: Table S2. of A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70Â % rule

description: List of taxonomic groups and numbers of singleton and non-singleton high-identity clades (HICs). (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3640889_d7
title: Additional file 9: Table S6. of A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70 % rule

description: List of clades in Fig. 2, Fig. 3, Additional file 3: Figure S2, and Additional file 8: Figure S3. (XLSX 10406 kb)
DOI: 10.6084/m9.figshare.c.3640889_d9
title: Additional file 7: Table S5. of A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70Â % rule

description: The p values of chi-square tests comparing the numbers of singleton and non-singleton high-identity clades (HICs) between taxonomic groups. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.c.3640916_d1
title: Additional file 2: of Gonadal transcriptomics elucidate patterns of adaptive evolution within marine rockfishes (Sebastes)

description: S. saxicola assembly summary statistics. (XLS 21Â kb)
DOI: 10.6084/m9.figshare.c.3640916_d2
title: Additional file 1: of Gonadal transcriptomics elucidate patterns of adaptive evolution within marine rockfishes (Sebastes)

description: EST assembly statististics for S. goodei. (XLS 22Â kb)
DOI: 10.6084/m9.figshare.c.3640919_d1
title: Additional file 1: of Non-coplanar volumetric-modulated arc therapy (VMAT) for craniopharyngiomas reduces radiation doses to the bilateral hippocampus: a planning study comparing dynamic conformal arc therapy, coplanar VMAT, and non-coplanar VMAT

description: The dataset supporting our findings. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.c.3640925_d1
title: Additional file 1: Table S1. of Combined physiological, transcriptome, and cis-regulatory element analyses indicate that key aspects of ripening, metabolism, and transcriptional program in grapes (Vitis vinifera L.) are differentially modulated accordingly to fruit size

description: Summary of RNA sequencing analysis metrics. RNA sequencing were carried in skins of small and large berries at four berry developmental stages namely 47 (before ripening, 4.9 °Brix), 74 (early ripening, 17.5 °Brix), 103 (ripening, 22.4 °Brix), and 121 (late ripening, 25.3 °Brix) days after anthesis (DAA). Table S2. Transcript abundance of the DE genes, reported as log2 (FPKM + 1) values, for each individual biological replicate (R1, R2, R3) in each treatment (small and large berry) at 47, 74, 103, and 121 days after anthesis. Table S3. Summary of differentially expressed genes between small and large berries at four berry developmental stages. All differentially expressed genes (Adj. P-value &lt;0.05) and detailed description of the 12×V1 gene ID, log2 fold change values (small vs large), differential expression calls across four developmental stages, average log2 (FPKM + 1) values (3 replicates) of small and large  berries together and individually, k-means assigned cluster (based on response and developmental stage), functional annotations based on Grimplet et al. [37] (including transcription factors), and MapMan pipeline. Table S4. Summary of PLACE- and PBM-curated cis-regulatory elements (CRE) analysis of k-means assigned clusters and selected group of genes. All information on the number of promoters with the specified CRE (match_in_sample), the number of genes within each group, number of promoters in the genome containing the specified CRE (match_in_genome), P-value and FDR of enriched CRE (FDR
DOI: 10.6084/m9.figshare.c.3640928_d1
title: Additional file 1: of Bovine mastitis: prevalence, risk factors and isolation of Staphylococcus aureus in dairy herds at Hawassa milk shed, South Ethiopia

description: Raw data from bovine mastitis study at Hawassa milk shed, South Ethiopia. The additional file contains the entire herd and animal-level raw data collected from 529 lactating cows at Hawassa milk shed, South Ethiopia and on which the conclusion of the manuscript rely. The data will be freely available at the journalâ  s webpage to any scientist wishing to use them for noncommercial purposes. (XLSX 86Â kb)
DOI: 10.6084/m9.figshare.c.3640940_d1
title: Additional file 2: Table S1. of RISC-mediated control of selected chromatin regulators stabilizes ground state pluripotency of mouse embryonic stem cells

description: Top RISC-released/loaded genes and top ribosome-loaded/released genes during the ESâ  ELA transition. (XLS 260 kb)
DOI: 10.6084/m9.figshare.c.3640940_d2
title: Additional file 3: Table S2. of RISC-mediated control of selected chromatin regulators stabilizes ground state pluripotency of mouse embryonic stem cells

description: Gene Ontology terms enriched in mRNA which are released from RISC during the ES–ELA transition; Gene Ontology terms enriched in mRNA which are loaded on ribosomes during the ES–ELA transition; Families of chromatin remodelers showing the name and mRNA NCBI accession ID of their members. (XLS 73 kb)
DOI: 10.6084/m9.figshare.c.3640940_d4
title: Additional file 4: Table S3. of RISC-mediated control of selected chromatin regulators stabilizes ground state pluripotency of mouse embryonic stem cells

description: Results of proteomic relative quantifiction of nuclear extracts from ES and ELA cells; Genes, unrelated to chromatin remodelers, with similar regulation of mRNAs in Fig.Â 4bâ  d. (XLS 24 kb)
DOI: 10.6084/m9.figshare.c.3640940_d5
title: Additional file 6: Table S4. of RISC-mediated control of selected chromatin regulators stabilizes ground state pluripotency of mouse embryonic stem cells

description: mRNAs that are differentially expressed during the ESâ  ELA transition as evaluated by microarray analysis. (XLS 148 kb)
DOI: 10.6084/m9.figshare.c.3640940_d6
title: Additional file 5: Table S5. of RISC-mediated control of selected chromatin regulators stabilizes ground state pluripotency of mouse embryonic stem cells

description: List of miRNAs downregulated during the ES–ELA transition; miRanda scores predicted for mRNAs in Fig. 4i–k. (XLS 31 kb)
DOI: 10.6084/m9.figshare.c.3640952_d1
title: Additional file 4: Table S3. of Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

description: Taxonomic classification of non-human nanopore reads identified using MetaPORE. (XLSX 117 kb)
DOI: 10.6084/m9.figshare.c.3640952_d2
title: Additional file 2: Table S2. of Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

description: MetaPORE performance according to system configuration and alignment mode. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3640952_d3
title: Additional file 1: Table S1. of Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

description: Optimization of word count for MegaBLAST alignment to the NT reference database. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3640961_d1
title: Additional file 4: Table S4. of Mango (Mangifera indica L.) germplasm diversity based on single nucleotide polymorphisms derived from the transcriptome

description: List of accessions in the Israeli germplasm collection and metadata. (XLSX 11 kb)
DOI: 10.15468/dl.brfhrh
title: Occurrence Download

description: A dataset containing 1118 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agrilus planipennis Fairmaire, 1888",
 "Country is Canada",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 1118 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033913-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gfnhpu
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oziroe acaulis (Baker) Speta"
 ]
}

 The dataset includes 100 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000963-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s82625
title: Occurrence Download

description: A dataset containing 472 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anomis argillacea Hübner, 1823",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 472 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000965-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h467je
title: Occurrence Download

description: A dataset containing 794 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dinebra retroflexa (Vahl) Panz.",
 "Continent is Africa"
 ]
}

 The dataset includes 794 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000964-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26093/cds/vizier.74940396
title: Metallicity distribution in GC

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' Asymmetric spatial distribution of subsolar metallicity stars in the Milky Way nuclear star cluster.' (bibcode: 2020MNRAS.494..396F)
DOI: 10.15468/dl.3vty2s
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.1_1",
 "TaxonKey is Gordonia lasianthus L. ex Ellis"
 ]
}

 The dataset includes 12 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000966-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.