cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17789194
title: EOW Results Database

description: The density of several wild mammals' populations were estimated implementing the Random Encounter Model with a standardized protocol within the activities of the European Observatory of Wildlife. The xlsx file "EOW_database" is made of four sheets:

1- EOW policy information on data access and data use

2- Study sites metadata

3- summary data obtained in each study site during each year of monitoring

4- legend

The pdf file "EOW_REM_protocol_2.1" provides a detailed explanation of the protocol implemented.
DOI: 10.5281/zenodo.14961352
title: EOW Results Database

description: The density of several wild mammals' populations were estimated implementing the Random Encounter Model with a standardized protocol within the activities of the European Observatory of Wildlife. The xlsx file "EOW_database" is made of four sheets:

1- EOW policy information on data access and data use

2- Study sites metadata

3- summary data obtained in each study site during each year of monitoring

4- legend

The pdf file "EOW_REM_protocol_2.1" provides a detailed explanation of the protocol implemented.
DOI: 10.6084/m9.figshare.27203796
title: Glycan array list

description: List of the glycans on the array used in Figure 4A and 4B.
DOI: 10.6084/m9.figshare.27203796.v1
title: Glycan array list

description: List of the glycans on the array used in Figure 4A and 4B.
DOI: 10.34740/kaggle/dsv/14720443
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.18470977
title: БОЛАЛАРДА БРОНХИАЛ АСТМАНИНГ ЗАМОНАВИЙ СТАНДАРТ ДАВОЛАШ ЙЎНАЛИШИ

description: Мақолада болаларда бронхиал астманинг замонавий стандартларга асосланган диагностика ва даволаш усуллари илмий жиҳатдан таҳлил қилинди. Бронхиал астма нафас йўлларининг сурункали яллиғланиши, бронхиолларнинг такрорланувчи ториши ва нафас олиш қийинчилиги билан намоён бўладиган касалликдир. Болаларда астмани ўз вақтида аниқлаш ва самарали даволаш нафас йўллари яллиғланишини камайтириш, симптомларни юмшатиш ва касаллик асоратларини олдини олиш учун муҳимдир. Мақолада ингаляцион кортикостероидлар, бронходилататорлар, индивидуаллаштирилган терапия режалари ва профилактика чоралари асосида касалликни бошқариш усуллари кўриб чиқилди. Шунингдек, ота-оналарни ва болаларни касаллик ҳақида хабардор қилишнинг аҳамиятига алоҳида тўхталиб ўтилди.
DOI: 10.5281/zenodo.18470978
title: БОЛАЛАРДА БРОНХИАЛ АСТМАНИНГ ЗАМОНАВИЙ СТАНДАРТ ДАВОЛАШ ЙЎНАЛИШИ

description: Мақолада болаларда бронхиал астманинг замонавий стандартларга асосланган диагностика ва даволаш усуллари илмий жиҳатдан таҳлил қилинди. Бронхиал астма нафас йўлларининг сурункали яллиғланиши, бронхиолларнинг такрорланувчи ториши ва нафас олиш қийинчилиги билан намоён бўладиган касалликдир. Болаларда астмани ўз вақтида аниқлаш ва самарали даволаш нафас йўллари яллиғланишини камайтириш, симптомларни юмшатиш ва касаллик асоратларини олдини олиш учун муҳимдир. Мақолада ингаляцион кортикостероидлар, бронходилататорлар, индивидуаллаштирилган терапия режалари ва профилактика чоралари асосида касалликни бошқариш усуллари кўриб чиқилди. Шунингдек, ота-оналарни ва болаларни касаллик ҳақида хабардор қилишнинг аҳамиятига алоҳида тўхталиб ўтилди.
DOI: 10.25625/eumhqz
title: Enhancing economic multifunctionality without compromising multidiversity and ecosystem multifunctionality via forest enrichment

description: Datasets and codes for the paper "Enhancing economic multifunctionality without compromising multidiversity and ecosystem multifunctionality via forest enrichment".
DOI: 10.5281/zenodo.18468666
title: Dataset belonging to Habitat fragmentation controls bacterial community composition outcomes

description: This Dataset contains the raw data, processed data, and script/code underlying the results and figures presented in the manuscript "Habitat fragmentation controls bacterial community composition outcomes".

by: 

Maxime Batsch*,+, Anna Puzyrko, Isaline Guex, Jan Roelof van der Meer

1) Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland

*Corresponding author: maxime.batsch@chuv.ch

+ current address: Institute of Microbiology, CHUV, Lausanne, Switzerland

The raw data consists of microscopy droplet/cell image data, 96-well plate reader data, flow cytometry cell counts, and 300 bp paired-end 16S amplicons sequencing fastq files.Processed data are organised by Figure in the manuscript and/or the Supplementary figures belonging to the manuscript. Figure folders contain the main output, the code and scripts to produce the output from the input raw data, and relevant statistical tests.
DOI: 10.5281/zenodo.18468665
title: Dataset belonging to Habitat fragmentation controls bacterial community composition outcomes

description: This Dataset contains the raw data, processed data, and script/code underlying the results and figures presented in the manuscript "Habitat fragmentation controls bacterial community composition outcomes".

by: 

Maxime Batsch*,+, Anna Puzyrko, Isaline Guex, Jan Roelof van der Meer

1) Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland

*Corresponding author: maxime.batsch@chuv.ch

+ current address: Institute of Microbiology, CHUV, Lausanne, Switzerland

The raw data consists of microscopy droplet/cell image data, 96-well plate reader data, flow cytometry cell counts, and 300 bp paired-end 16S amplicons sequencing fastq files.Processed data are organised by Figure in the manuscript and/or the Supplementary figures belonging to the manuscript. Figure folders contain the main output, the code and scripts to produce the output from the input raw data, and relevant statistical tests.
DOI: 10.5281/zenodo.18418256
title: Human mitochondrial calcium uniporter (MCU) amino terminal domain (NTD) molecular dynamics using the CHARMM36 force field.

description: GROMACS 2022.3 trajectory (xtc) and energy (edr) files. 1001 ns at 310K.
DOI: 10.5281/zenodo.18418257
title: Human mitochondrial calcium uniporter (MCU) amino terminal domain (NTD) molecular dynamics using the CHARMM36 force field.

description: GROMACS 2022.3 trajectory (xtc) and energy (edr) files. 1001 ns at 310K.
DOI: 10.5281/zenodo.18446324
title: Pressure Signal Dataset for Leak Detection in Electro-Pneumatic Systems

description: This dataset contains pressure time-series signals acquired from an electro-pneumatic system operating under normal conditions and different leak scenarios. The signals were obtained from controlled experiments and simulations, representing distinct operating states such as normal operation, advance and retraction movements, and internal and external leakage conditions.

All signals were sampled at a fixed sampling frequency and stored in CSV format. The dataset was designed to support research on condition monitoring, fault diagnosis, and automatic leak detection using machine learning and signal processing techniques.

The dataset was used in the development and evaluation of multiple classification models, including linear models, decision trees, ensemble methods, neural networks, and reservoir computing approaches. Feature extraction was performed using the TSFEL library, resulting in a total of 156 features per signal window.

This dataset is publicly available to promote reproducibility and further research in intelligent monitoring of electro-pneumatic systems.
DOI: 10.5281/zenodo.18446323
title: Pressure Signal Dataset for Leak Detection in Electro-Pneumatic Systems

description: This dataset contains pressure time-series signals acquired from an electro-pneumatic system operating under normal conditions and different leak scenarios. The signals were obtained from controlled experiments and simulations, representing distinct operating states such as normal operation, advance and retraction movements, and internal and external leakage conditions.

All signals were sampled at a fixed sampling frequency and stored in CSV format. The dataset was designed to support research on condition monitoring, fault diagnosis, and automatic leak detection using machine learning and signal processing techniques.

The dataset was used in the development and evaluation of multiple classification models, including linear models, decision trees, ensemble methods, neural networks, and reservoir computing approaches. Feature extraction was performed using the TSFEL library, resulting in a total of 156 features per signal window.

This dataset is publicly available to promote reproducibility and further research in intelligent monitoring of electro-pneumatic systems.
DOI: 10.6084/m9.figshare.31241817
title: 4D-printed fibre-reinforced scaffolds with high elasticity and sustained estradiol release for uterine tissue regeneration

description: Uterine defects caused by diseases and injuries significantly deteriorate the functions of the uterus and even result in infertility. Tissue engineering scaffolds, possessing comparable mechanical strength and sustained estradiol (E2) release and shape-morphing ability to match the anatomical structure of native uterine tissues, may be effective for treating uterine defects and restoring fertility. In the current study, fibre-reinforced scaffolds were fabricated via electrospinning and 4D printing. Short electrospun thermoplastic polyurethane (TPU) fibres encapsulated with polydopamine (PDA) particles (TPU-PDA fibres) were homogenised in poly(L-lactide-co-trimethylene carbonate) (PLLA-co-TMC, ‘PLATMC’ in short) solutions to engineer fibre-reinforced scaffolds via 4D printing. E2 was loaded in PDA particles. The incorporation of TPU-PDA fibres in the PLATMC solution increased the printability of inks and improved the fidelity of printed scaffolds. Moreover, electrospun TPU-PDA fibres reinforced the mechanical strength of printed scaffolds (&gt;2.5 MPa), and fibre-reinforced scaffolds thus prepared were highly elastic (&gt;600% strain). Also, fibre-reinforced scaffolds exhibited sustained E2 release over 8 weeks, which promoted the growth and proliferation of rat bone marrow-derived mesenchymal stem cells (BMSCs). After programmed shape deformation, fibre-reinforced scaffolds could evolve shape morphing through transforming planar shape into a curved or tubular structure to meet the curvature of uterine tissues after being cultured in a culture medium at 37°C, which provides new insight into uterine regeneration.
DOI: 10.6084/m9.figshare.31241817.v1
title: 4D-printed fibre-reinforced scaffolds with high elasticity and sustained estradiol release for uterine tissue regeneration

description: Uterine defects caused by diseases and injuries significantly deteriorate the functions of the uterus and even result in infertility. Tissue engineering scaffolds, possessing comparable mechanical strength and sustained estradiol (E2) release and shape-morphing ability to match the anatomical structure of native uterine tissues, may be effective for treating uterine defects and restoring fertility. In the current study, fibre-reinforced scaffolds were fabricated via electrospinning and 4D printing. Short electrospun thermoplastic polyurethane (TPU) fibres encapsulated with polydopamine (PDA) particles (TPU-PDA fibres) were homogenised in poly(L-lactide-co-trimethylene carbonate) (PLLA-co-TMC, ‘PLATMC’ in short) solutions to engineer fibre-reinforced scaffolds via 4D printing. E2 was loaded in PDA particles. The incorporation of TPU-PDA fibres in the PLATMC solution increased the printability of inks and improved the fidelity of printed scaffolds. Moreover, electrospun TPU-PDA fibres reinforced the mechanical strength of printed scaffolds (&gt;2.5 MPa), and fibre-reinforced scaffolds thus prepared were highly elastic (&gt;600% strain). Also, fibre-reinforced scaffolds exhibited sustained E2 release over 8 weeks, which promoted the growth and proliferation of rat bone marrow-derived mesenchymal stem cells (BMSCs). After programmed shape deformation, fibre-reinforced scaffolds could evolve shape morphing through transforming planar shape into a curved or tubular structure to meet the curvature of uterine tissues after being cultured in a culture medium at 37°C, which provides new insight into uterine regeneration.
DOI: 10.5281/zenodo.18470986
title: ЧАКАЛОКЛАРДАГИ АНЕМИЯНИНГ ДАВОЛАШНИНГ ЗАМОНАВИЙ ЙУНАЛИШИ

description: Ушбу мақолада чакалокларда анемияни даволашнинг замонавий йўналишлари таҳлил қилинди. Озуқавий терапия, парентерал темир препаратлари, ген терапияси ва индивидуаллаштирилган даволаш усуллари каби инновацион методлар клиник амалиётдаги самарадорлигига кўра баҳоланди. Тадқиқот натижалари ана шу ёндошувларнинг гемоглобин даражасини оширишда ва клиник симптомларни енгиллаштиришда муҳим аҳамиятга эга эканлигини кўрсатди. Шу билан бирга, профилактика чоралари ва аниқ диагностика усуллари анемия билан боғлиқ салбий оқибатларни камайтиришда муҳим роль ўйнайди.
DOI: 10.5281/zenodo.18470985
title: ЧАКАЛОКЛАРДАГИ АНЕМИЯНИНГ ДАВОЛАШНИНГ ЗАМОНАВИЙ ЙУНАЛИШИ

description: Ушбу мақолада чакалокларда анемияни даволашнинг замонавий йўналишлари таҳлил қилинди. Озуқавий терапия, парентерал темир препаратлари, ген терапияси ва индивидуаллаштирилган даволаш усуллари каби инновацион методлар клиник амалиётдаги самарадорлигига кўра баҳоланди. Тадқиқот натижалари ана шу ёндошувларнинг гемоглобин даражасини оширишда ва клиник симптомларни енгиллаштиришда муҳим аҳамиятга эга эканлигини кўрсатди. Шу билан бирга, профилактика чоралари ва аниқ диагностика усуллари анемия билан боғлиқ салбий оқибатларни камайтиришда муҳим роль ўйнайди.
DOI: 10.6084/m9.figshare.31241723
title: En-bloc resection achieves higher GTR rates with similar neurological outcomes in grade-2 intramedullary spinal ependymomas: single-centre cohort study

description: Gross total resection (GTR) improves progression-free and overall survival in CNS WHO grade 2 intramedullary spinal ependymomas. En bloc resection (circumferential dissection and removal in one piece) may maximise GTR while preserving cord integrity, compared with piecemeal resection (internal debulking and fragmentary removal). To compare en bloc and piecemeal resection strategies with respect to GTR rates, neurological outcomes and disease relapse. A retrospective cohort study of 39 patients treated over a 13-year period at a single tertiary centre. Primary outcomes were extent of resection and neurological deterioration (modified McCormick Scale). Disease relapse (post-GTR recurrence or post-STR progression) was a secondary outcome. On multivariate analysis, en bloc resection independently predicted GTR (OR 6.54, 95% CI 1.14–37.5, <i>p</i> = 0.035), while the presence of a syrinx was associated with reduced odds of GTR (OR 0.08, <i>p</i> = 0.047). Neurological deterioration (≥1 mMCS grade) did not differ significantly between techniques (36.4% vs 58.8%, <i>p</i>=NS). Disease relapse occurred in five patients and was strongly associated with residual tumour (OR 44.4, p = 0.003). Residual disease was the dominant predictor of relapse. En bloc resection was associated with higher GTR rates without evidence of increased neurological morbidity, identifying surgical strategy as a potentially modifiable determinant of oncological outcome. These findings are hypothesis-generating and support prospective, multicentre studies to define evidence-based resection strategies. For CNS WHO Grade 2 intramedullary spinal ependymoma: Residual disease following surgery is strongly predictive of disease relapse. Achieving GTR at index or staged reoperation is prognostically critical. En bloc resection strategy is associated with increased GTR rates, without evidence of elevated neurological risk. Syrinx is associated with reduced GTR rates. Multi-centre prospective controlled trials are required to define evidence-based resection strategies.
DOI: 10.6084/m9.figshare.31241723.v1
title: En-bloc resection achieves higher GTR rates with similar neurological outcomes in grade-2 intramedullary spinal ependymomas: single-centre cohort study

description: Gross total resection (GTR) improves progression-free and overall survival in CNS WHO grade 2 intramedullary spinal ependymomas. En bloc resection (circumferential dissection and removal in one piece) may maximise GTR while preserving cord integrity, compared with piecemeal resection (internal debulking and fragmentary removal). To compare en bloc and piecemeal resection strategies with respect to GTR rates, neurological outcomes and disease relapse. A retrospective cohort study of 39 patients treated over a 13-year period at a single tertiary centre. Primary outcomes were extent of resection and neurological deterioration (modified McCormick Scale). Disease relapse (post-GTR recurrence or post-STR progression) was a secondary outcome. On multivariate analysis, en bloc resection independently predicted GTR (OR 6.54, 95% CI 1.14–37.5, <i>p</i> = 0.035), while the presence of a syrinx was associated with reduced odds of GTR (OR 0.08, <i>p</i> = 0.047). Neurological deterioration (≥1 mMCS grade) did not differ significantly between techniques (36.4% vs 58.8%, <i>p</i>=NS). Disease relapse occurred in five patients and was strongly associated with residual tumour (OR 44.4, p = 0.003). Residual disease was the dominant predictor of relapse. En bloc resection was associated with higher GTR rates without evidence of increased neurological morbidity, identifying surgical strategy as a potentially modifiable determinant of oncological outcome. These findings are hypothesis-generating and support prospective, multicentre studies to define evidence-based resection strategies. For CNS WHO Grade 2 intramedullary spinal ependymoma: Residual disease following surgery is strongly predictive of disease relapse. Achieving GTR at index or staged reoperation is prognostically critical. En bloc resection strategy is associated with increased GTR rates, without evidence of elevated neurological risk. Syrinx is associated with reduced GTR rates. Multi-centre prospective controlled trials are required to define evidence-based resection strategies.
DOI: 10.5281/zenodo.18257766
title: Raw data and code for: Effects of flower patch additions and urbanisation on cavity-nesting bees and wasps.

description: Abstract

1.     Cavity-nesting bees and wasps provide essential ecosystem services such as pollination and pest control but can be negatively affected by urbanisation. Within urban environments, cavity-nesting hymenopterans use greenspaces to forage for food and nesting resources, and thus may benefit from urban greenspace management interventions, such as the addition of flower patches and "bee hotels" (artificial nests).

2.     While additions of floral resources and artificial nests are common interventions to support urban pollinators, empirical validation of these tools in heterogeneous urban landscapes is still limited.  Consequently, we lack empirical evidence which would justify their widespread use, and which could help optimise conservation interventions for these taxa.

3.     To understand how the addition of floral resources influences cavity-nesting hymenopteran communities, we conducted a 2-year, city-wide study in urban greenspaces used for horticulture (allotments) in the U.K which can be variable in their management. We manipulated floral and nesting resources by adding nectar-rich flower patches and artificial nests and compared nest colonisation by cavity-nesting bees and wasps in sites with and without floral additions. Our sites were configured along an urbanisation gradient, allowing us to test whether interventions mitigate the complex effects of surrounding urbanisation.

4.     We found no significant difference in artificial nest uptake in sites where floral resources were added, compared to control sites. Cavity-nesting hymenopteran abundance showed a 6-fold decrease over our urbanisation gradient, but the negative effect of urbanisation was not mitigated by experimental addition of floral resources or by existing variation in floral resources at an allotment site-level. While the benefits of floral enrichment could likely be enhanced through an improved understanding of floral nutrition, our results suggest that, as commonly deployed, these interventions may carry fewer benefits for cavity-nesting solitary bee and wasp communities than currently assumed.

5.     Although enhancing floral resources in urban areas is a widely used strategy to support pollinators, particularly bees, our results show that the benefits of such interventions are complicated and hard to detect. We demonstrate that the effectiveness of floral supplementation depends on the spatial scale of the intervention, the diversity of resource requirements across insect groups, and the surrounding urban landscape. Our findings highlight the need for conservation actions that move beyond single-taxon approaches and consider both local resource provision and landscape context to support diverse insect communities in cities.
DOI: 10.5281/zenodo.18257767
title: Raw data and code for: Effects of flower patch additions and urbanisation on cavity-nesting bees and wasps.

description: Abstract

1.     Cavity-nesting bees and wasps provide essential ecosystem services such as pollination and pest control but can be negatively affected by urbanisation. Within urban environments, cavity-nesting hymenopterans use greenspaces to forage for food and nesting resources, and thus may benefit from urban greenspace management interventions, such as the addition of flower patches and "bee hotels" (artificial nests).

2.     While additions of floral resources and artificial nests are common interventions to support urban pollinators, empirical validation of these tools in heterogeneous urban landscapes is still limited.  Consequently, we lack empirical evidence which would justify their widespread use, and which could help optimise conservation interventions for these taxa.

3.     To understand how the addition of floral resources influences cavity-nesting hymenopteran communities, we conducted a 2-year, city-wide study in urban greenspaces used for horticulture (allotments) in the U.K which can be variable in their management. We manipulated floral and nesting resources by adding nectar-rich flower patches and artificial nests and compared nest colonisation by cavity-nesting bees and wasps in sites with and without floral additions. Our sites were configured along an urbanisation gradient, allowing us to test whether interventions mitigate the complex effects of surrounding urbanisation.

4.     We found no significant difference in artificial nest uptake in sites where floral resources were added, compared to control sites. Cavity-nesting hymenopteran abundance showed a 6-fold decrease over our urbanisation gradient, but the negative effect of urbanisation was not mitigated by experimental addition of floral resources or by existing variation in floral resources at an allotment site-level. While the benefits of floral enrichment could likely be enhanced through an improved understanding of floral nutrition, our results suggest that, as commonly deployed, these interventions may carry fewer benefits for cavity-nesting solitary bee and wasp communities than currently assumed.

5.     Although enhancing floral resources in urban areas is a widely used strategy to support pollinators, particularly bees, our results show that the benefits of such interventions are complicated and hard to detect. We demonstrate that the effectiveness of floral supplementation depends on the spatial scale of the intervention, the diversity of resource requirements across insect groups, and the surrounding urban landscape. Our findings highlight the need for conservation actions that move beyond single-taxon approaches and consider both local resource provision and landscape context to support diverse insect communities in cities.
DOI: 10.5281/zenodo.17536127
title: Mechanically concealed holes

description: This dataset contains the molecular dynamics data for the followng paper:

Kanka Ghosh and Andreas M. Menzel, 

Mechanically concealed holes 

arXiv.2511.00135 (DOI: https://doi.org/10.48550/arXiv.2511.00135)

For more information, see the included "readme.txt" in the dataset "Dataset.zip".