cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.65f22d6
title: Data from: Biochemical and functional analysis of Cyanobacterium Oscillatoria sp. LPS on human monocytes

description: Cyanobacterial blooms are an increasing source of environmental toxins
 that affect both human and animals. After ingestion of cyanobacteria, such
 as Geitlerinema sp., toxins and lipopopolysaccharide (LPS) from this
 organism induce fever, gastro-intestinal illness, and even death. However,
 little is known regarding the effects of cyanobacterial LPS on human
 monocytes after exposure to LPS upon ingestion. Based on our previous data
 using Geitlerinema sp. LPS (which was previously named Oscillatoria sp., a
 genus belonging to the same order as Geitlerinema), we hypothesized that
 Geitlerinema sp. LPS would activate human monocytes to proliferate,
 phagocytose particles and produce cytokines that are critical for
 promoting pro-inflammatory responses in the gut. Our data demonstrate that
 Geitlerinema sp. LPS induces monocyte proliferation and TNF-α, IL-1, and
 IL-6 production at high concentrations. In contrast, Geitlerinema sp. LPS
 is equally capable of inducing monocyte-mediated phagocytosis of
 FITC-Latex beads when compared to E. coli LPS, which was used as a
 positive control for our experiments. In order to understand the mechanism
 responsible for the difference in efficacy between Geitlerinema sp. LPS
 and E. coli LPS, we performed biochemical analysis and identified that
 Geitlerinema sp. LPS is comprised of significantly different sugars and
 fatty-acid side chains in comparison to E. coli LPS. The lipid A portion
 of Geitlerinema sp. LPS contains longer fatty acid side chains, such as
 C15:0, C16:0, and C18:0, instead of C12:0 found in E. coli LPS which may
 explain the decreased efficacy and toxicity of Geitlerinema sp. LPS in
 comparison to E. coli LPS.
description: Supplemental Fig
 1Supplemental Fig
 2aSupplemental Fig
 2bSupplemental Fig
 2cSupplemental Fig
 3aSupplemental Fig
 3bSupplemental Fig
 3c
DOI: 10.5061/dryad.qb10764
title: Data from: Calculating maximum morphine equivalent daily dose from prescription directions for use in the electronic health record: a case report

description: Objective To demonstrate a process of calculating the maximum potential
 morphine milligram equivalent daily dose (MEDD) based on the prescription
 Sig for use in quality improvement initiatives. Methods To calculate an
 opioid prescription’s maximum potential Sig-MEDD, we developed SQL code to
 determine a prescription’s maximum units/day using discrete field data and
 text-parsing in the prescription instructions. We validated the derived
 units/day calculation using 3,000 Sigs, then compared the Sig-MEDD
 calculation against the Epic MEDD calculator. Results Of the 101,782
 outpatient opioid prescriptions ordered over one year, 80% used
 discrete-field Sigs, 7% used free-text Sigs, and 3% used both types. We
 determined units/day and calculated a Sig-MEDD for 98.3% of all
 prescriptions, 99.99% of discrete-Sig prescriptions, and 81.5% of
 free-text-Sig prescriptions. Conclusion Analyzing opioid prescription Sigs
 to determine a maximum potential Sig-MEDD provides greater insight into a
 patient’s risk for opioid exposure.
description: Calculating Maximum
 Morphine Equivalent Daily Dose from Prescription Directions Data
 SetThis de-identified
 dataset was used in the publication "Calculating Maximum Morphine
 Equivalent Daily Dose from Prescription Directions for Use in the
 Electronic Health Record" to demonstrate a method a calculating
 Maximum Morphine Equivalent Daily Dose (MEDD) from prescription
 sigs.MMED_Opioid_JAMIA_Open_Data.xlsx
DOI: 10.48557/luonqb
title: Replication data for "Depth Estimation Comparison Between Realsense D435i, D435f, Stereolabs ZED X and ZED X Mini"

description: This dataset contains ROS 2 bags and log files extracted during the evaluation of the depth accuracy in the paper "Depth Estimation Comparison Between Realsense D435i, D435f, Stereolabs ZED X and ZED X Mini". Please refer to the README.md file to understand how to download the database using the provided script.
A copy of the code used to reproduce the data can be found at https://github.com/ADVRHumanoids/CameraComparison_code.git &lt;br&gt;
&lt;br&gt;
&lt;b&gt;NOTE&lt;/b&gt;&lt;br&gt;
Please note that the log files are the one extracted during data collection, additional data presented on the paper were collected using the code provided in GitHub.
DOI: 10.5061/dryad.48nh831
title: Data from: The patterns and possible causes of global geographical variation in the body size of the greater horseshoe bat (Rhinolophus ferrumequinum)

description: Aim: Geographical variations in endotherm body size (e.g., Bergmann’s
 rule/James's rule and Allen’s rule) have long been tested. However,
 the patterns and causes of geographical variation in body size within bat
 species, especially within widespread hibernating species, are little
 known. Here, we evaluated the possible causes of geographical size
 variation patterns in the greater horseshoe bat (Rhinolophus
 ferrumequinum), a bat species widely distributed across the Palearctic.
 Location: Palearctic Methods: We collected body size data (body mass and
 forearm length) from 1172 adult bats via direct measurements or from the
 literature. We used high-resolution environmental data for the sampled
 sites. We applied multiple linear regressions and an information-theoretic
 approach on separate female and male datasets to estimate the support for
 various hypotheses. Results: Temperature and latitude failed to predict
 body mass in both females and males. The best model showed that
 populations with longer forearms in both sexes were associated with higher
 mean temperatures (in the warmest quarter) and lower mean temperatures (in
 the coldest quarter). The independent contribution of these temperature
 parameters to forearm length in both sexes was higher than that of all
 other variables. Main conclusion: The observed relationship between
 temperature and body mass was not consistent with James’s rule, and thus
 failed to support the heat conservation hypothesis. Our results are
 consistent with the predictions of Allen’s rule and indicated that direct
 heat dissipation from the wing may be the most likely mechanism underlying
 geographical variation in forearm length. We suggest that the evaluation
 of the relative importance of multiple causal mechanisms may improve our
 understanding of patterns of geographical variation in endotherms.
description: Data for geographical
 variation in the body size of the greater horseshoe bat
DOI: 10.34740/kaggle/dsv/14641686
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5061/dryad.k200rt4
title: Data from: Phylogeography of ants from the Brazilian Atlantic Forest

description: Known for its remarkable biodiversity and high levels of endemism, the
 Brazilian Atlantic Rainforest has been characterized as one of the most
 threatened biomes on the planet. Despite strong interest in recent years,
 we still lack a comprehensive scenario to explain the origin and
 maintenance of diversity in this region, partially given the relatively
 low power of analyses involving few independent genetic loci. In this
 study, we examine a phylogenomic dataset of five ant species to
 investigate phylogeographical patterns across the Brazilian Atlantic
 Forest. We sequenced ultraconserved elements to generate hundreds of loci
 using a bait set developed specifically for hymenopterans. We analyzed the
 data using Bayesian and maximum likelihood approaches of phylogenetic
 inference. Results were then integrated with environmental niche modeling
 of current and past climates, including the Last Glacial Maximum and the
 last interglacial period. The studied species showed differentiation
 patterns that were consistent with the north/south division of the
 Atlantic Rainforest indicated in previous studies for other taxa. However,
 there were differences among species, both in the location of
 phylogeographic breaks and in the pattern of genetic variation within
 these areas. Samples from southern localities tended to show recent
 genetic structure, although a site in Tapiraí (state of São Paulo)
 repeatedly showed an intriguing older history of differentiation. All
 species experienced shifts in areas of suitability through the time. Our
 study suggests that distinct groups may have responded idiosyncratically
 to the climatic changes that took place in the Brazilian Atlantic Forest.
 The amount of intraspecific genetic structure was related to the inferred
 geographical distribution of habitat suitability according to current and
 past times. Also, a parallel between the amount of Quaternary climatic
 suitability and the level of interspecific differentiation was detected
 for four species. Finally, despite strong contractions at the northeastern
 region of the forest, the remaining areas appear to have been able to act
 as refugia.
description: Heteroponera_dentinodisUCEs Fasta fileHylomyrma_reitteriUCEs Fasta file.Megalomyrmex_driftiUCEs Fasta fileOctostruma_rugiferaOctostruma_stenognathaUCEs Fasta fileOdontomachus_meinertiUCEs Fasta fileStrumigenys_crassicornisUCEs Fasta fileStrumigenys_denticulataUCEs Fasta filetable-reference-ant-number-to-nameReference ant number to the species name.
DOI: 10.5061/dryad.1498h4m
title: Data from: Discrepancies in vegetation phenology trends and shift patterns in different climatic zones in middle and eastern Eurasia between 1982 and 2015

description: Changes in vegetation phenology directly reflect the response of
 vegetation growth to climate change. In this study, using the Normalized
 Difference Vegetation Index (NDVI) dataset from 1982 to 2015, we extracted
 start date of vegetation growing season (SOS), end date of vegetation
 growing season (EOS) and length of vegetation growing season (LOS) in the
 middle and eastern Eurasia region and evaluated linear trends in SOS, EOS
 and LOS for the entire study area, as well as for four climatic zones. The
 results show that the LOS has significantly increased by 0.27 d/yr (days
 per year), mostly due to a significantly advanced SOS (-0.20 d/yr) and a
 slightly delayed EOS (0.07 d/yr) over the entire study area from 1982 to
 2015. The vegetation phenology trends in the four climatic zones are not
 continuous throughout the 34 year period. Furthermore, discrepancies in
 the shifting patterns of vegetation phenology trend existed among
 different climatic zones. Turning points (TP) of SOS trends in the Cold
 zone, Temperate zone and Tibetan Plateau zone occurred in the mid or late
 1990s. The advanced trends of SOS in the Cold zone, Temperate zone and
 Tibetan Plateau zone exhibited accelerated, stalled and reversed patterns
 after the corresponding TP, respectively. The TP did not occurred in
 Cold-Temperate zone, where the SOS showed a consistent and continuous
 advance. TPs of EOS trends in the Cold zone, Cold-Temperate zone,
 Temperate zone and Tibetan Plateau zone occurred in the late 1980s or
 mid-1990s. The EOS in the Cold zone, Cold-Temperate zone, Temperate zone
 and Tibetan Plateau zone showed weak advanced or delayed trends after the
 corresponding TP, which were comparable with the delayed trends before the
 corresponding TP. The shift patterns of LOS trends were primarily
 influenced by the shift patterns of SOS trends and were also heterogeneous
 within climatic zones.
description: Phenology data in middle
 and eastern Eurasia from 1982 to 2015The folder named SOS
 stores the SOS data. The folder named EOS stores the EOS data. The
 "xlsx" files store the data corresponding to the figure in the
 article.Data.zip
DOI: 10.5061/dryad.122hs54
title: Data from: Genetic diversity and population structure of Glossina morsitans morsitans in the active foci of human African trypanosomiasis in Zambia and Malawi

description: The tsetse fly, Glossina morsitans morsitans, is a significant problem in
 Zambia and Malawi. It is the vector for the human infective parasite
 Trypanosoma brucei rhodesiense, which causes human African
 trypanosomiasis, and various Trypanosoma species, which cause African
 animal trypanosomiasis. Understanding the genetic diversity and population
 structure of G. m. morsitans is the basis of elucidating the connectivity
 of the tsetse fly populations, information that is essential in
 implementing successful tsetse fly control activities. This study
 conducted a population genetic study using partial mitochondrial
 cytochrome oxidase gene 1 (CO1) and 10 microsatellite loci to investigate
 the genetic diversity and population structure of G. m. morsitans captured
 in the major HAT foci in Zambia and Malawi. We have included 108 and 99 G.
 m. morsitans samples for CO1 and microsatellite analyses respectively. Our
 results suggest the presence of two different genetic clusters of G. m.
 morsitans, existing East and West of the escarpment of the Great Rift
 Valley. We have also revealed genetic similarity between the G. m.
 morsitans in Kasungu National Park and those in the Luangwa river basin in
 Zambia, indicating that this population should also be included in this
 historical tsetse belt. Although further investigation is necessary to
 illustrate the whole picture in East and Southern Africa, this study has
 extended our knowledge of the population structure of G. m. morsitans in
 Southern Africa.
description: Microsatellite
 GenotypeAll microsatellite
 markers were originally from other publications cited in the publication.
 Available data IDs are included in the table.
DOI: 10.5061/dryad.fd517kq
title: Data from: Monarch butterflies use an environmentally sensitive, internal timer to control overwintering dynamics

description: The monarch butterfly (Danaus plexippus) complements its iconic migration
 with diapause, a hormonally controlled developmental program that
 contributes to winter survival at overwintering sites. Although timing is
 a critical adaptive feature of diapause, how environmental cues are
 integrated with genetically-determined physiological mechanisms to time
 diapause development, particularly termination, is not well understood. In
 a design that subjected western North American monarchs to different
 environmental chamber conditions over time, we modularized constituent
 components of an environmentally-controlled, internal diapause termination
 timer. Using comparative transcriptomics, we identified molecular
 controllers of these specific diapause termination components. Calcium
 signaling mediated environmental sensitivity of the diapause timer, and we
 speculate that it is a key integrator of environmental condition (cold
 temperature) with downstream hormonal control of diapause. Juvenile
 hormone (JH) signaling changed spontaneously in diapause-inducing
 conditions, capacitating response to future environmental condition.
 Although JH is a major target of the internal timer, it is not itself the
 timer. Epigenetic mechanisms are implicated to be the proximate timing
 mechanism. Ecdysteroid, JH, and insulin/insulin-like peptide (IIS)
 signaling are major targets of the diapause program used to control
 response to permissive environmental conditions. Understanding the
 environmental and physiological mechanisms of diapause termination sheds
 light on fundamental properties of biological timing, and also helps
 inform expectations for how monarch populations may respond to future
 climate change.
description: Monarch overwinter trait
 data (dryad)This file contains data
 relevant to Green II and Kronforst 2019 (Molecular Ecology) article
 "Monarch butterflies use an environmentally sensitive, internal timer
 to control overwintering dynamics". Monarch butterflies were
 collected near Pismo Beach, CA in fall/winter 2015/2016. Phenotypes
 measured: mature oocyte count, (wet) mass. Experimental variables: chamber
 condition ('condition'), source of butterflies
 ('source'), and month of collection ('month').
 Individuals included in sequence analysis are indicated in
 'sequenced' column. Individuals that were sequenced have an
 additional sequencing submission id beginning with "MK-AG".
 Please refer to article for additional details.monarch_overwinter_traitData_dryad.xlsx
DOI: 10.5061/dryad.26vr077
title: Data from: Advancing the integration of multi-marker metabarcoding data in dietary analysis of trophic generalists

description: The application of DNA metabarcoding to dietary analysis of trophic
 generalists requires using multiple markers in order to overcome problems
 of primer specificity and bias. However, limited attention has been given
 to the integration of information from multiple markers, particularly when
 they partly overlap in the taxa amplified, and vary in taxonomic
 resolution and biases. Here we test the use of a mix of universal and
 specific markers, provide criteria to integrate multi-marker metabarcoding
 data and a python script to implement such criteria and produce a single
 list of taxa ingested per sample. We then compare the results of dietary
 analysis based on morphological methods, single markers, and the proposed
 combination of multiple markers. The study was based on the analysis of
 115 faeces from a small passerine, the Black Wheatears (Oenanthe leucura).
 Morphological analysis detected far fewer plant taxa (12) than either a
 universal 18S marker (57) or the plant trnL marker (124). This may partly
 reflect the detection of secondary ingestion by molecular methods.
 Morphological identification also detected far fewer taxa (23) than when
 using 18S (91) or the arthropod markers IN16STK (244) and ZBJ (231),
 though each method missed or underestimated some prey items. Integration
 of multi-marker data provided far more detailed dietary information than
 any single marker and estimated higher frequencies of occurrence of all
 taxa. Overall, our results show the value of integrating data from
 multiple, taxonomically overlapping markers in an example dietary dataset.
description: Sequencing
 dataZipped file containing
 fastq files for each sample. Files were generated using obitools by
 pairwise aligning raw read1 and read2 files. Each file contains sequencing
 reads from the 4 primer sets used for each sample.DL.rarDataESV occurrence, ESV ID, morphological ID data, and final data used for analysis.data.xlsx
DOI: 10.5061/dryad.f611bn3
title: Data from: Trait-based functional dietary analysis provides a better insight into the foraging ecology of bats

description: 1. The degree of trophic specialization determines the ability of
 predators to cope with changing foraging conditions, but in predators that
 prey on hundreds of species it is challenging to assess, especially when
 prey identity varies among predator individuals and across space and time.
 2. Here, we test the hypothesis that a bat species foraging on flying
 insects like moths will show ample flexibility in trophic niche, and this
 irrespective of phylogenetic relationships among moths, so as to cope with
 a high diversity of prey types that vary across seasons. We predict that
 individual bats will show functional dietary differences consistent with
 energetic requirements and hunting skills. 3. We used DNA metabarcoding to
 determine the diet of 126 Mediterranean horseshoe bats (Rhinolophus
 euryale) from two different sites during three seasons. Simultaneously, we
 measured moth availability and characterized the traits of 290 moth taxa.
 Next, we explored the relationship between phylogeny and traits of all
 consumed and available moth taxa. Finally, we assessed the relationship
 between individual traits of bats and traits related to prey
 profitability, for which we used the RLQ and fourth-corner statistical
 techniques. 4. Seasonality was the main factor explaining the functional
 dietary variation in adult bats, with moths consumed irrespective of their
 phylogenetic relationships. While adults consumed moths with a broad range
 in wing loading, body mass and echolocation detection ability, juveniles
 consumed slower, smaller and lighter moths, which suggests that young
 individuals may undergo some fitness gain and/or psychomotor learning
 process during which they would acquire more effective foraging skills. 5.
 Our approach revealed a degree of functional flexibility in the trophic
 niche previously unknown for an insectivorous bat. R. euryale consumed a
 wide variety of moth taxa differing in profitability throughout seasons
 and between ontogenetic stages. We showed the validity of trait-based
 approaches to gain new insights in the trophic specialization of predators
 consuming hundreds of species of prey.
description: Bat diet MOTU
 sequencesIncludes all the MOTUs
 (and their sequences) built after filtering and bioinformatic processing
 the originary sequences got from amplifying and massive sequencing of
 bats' faecal DNAAll_bat_individuals_diet_MOTU_sequences_representatives.fastaBat diet sequences bioinformatically processedIt includes all the sequences we got after amplyfied and massively sequenced bats' faecal DNA, excluding those with less than 15 copies, and those which didn't occur in both amplification replicas.All_bat_individuals_diet_sequences_bioinformatically_processed.fastaFull COI sequences used to build moths' phylogenyFull COI sequences, downloaded from BOLD, used to build the phylogenetic tree of the studied moths.Lepidoptera_COI_phylogeny.fastaMoths' phylogenyPhylogenetic tree of moths built with their COI sequencesLepidoptera_COI_phylogeny.tre