cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13020/d6s38m
title: Annotated Semantic Predications from SemMedDB

description: This data was collected from the Semantic MEDLINE Database (SemMedDb) ver 30, December 2016 release. It contains sentences, subject/object entity information, and predicate information as output by SemRep. It also contains annotations indicating whether each semantic predication is indeed expressed in the sentence. The data was used for the paper "Evaluating Active Learning Methods for Annotating Semantic Predications Extracted from MEDLINE", the associated manuscript is under review.
DOI: 10.13020/ngys-r052
title: Bifurcation Experiments: Timeseries, Images, Topographic Scans, St. Anthony Falls Laboratory, 2016-2017 

description: We ran a set of five experiments at the St. Anthony Falls Laboratory in Minneapolis, Minnesota to study how the dynamics of a bifurcation are affected by the downstream boundary (deposition vs. bypass). These data accompany our publication in Earth Surface Dynamics.
description: Please see readme.txt for detailed documentation. In this dataset, we provide time series of water and sediment flux through each branch of the bifurcation, time series of front positions, topographic scans of water and bed surface elevations, and overhead images. For completeness, both raw and processed versions of the data are available, as well as the processing scripts/data needed to convert between them.
DOI: 10.13020/8rkp-k493
title: Data supporting:  Reactive anti-predator behavioral strategy shaped by predator characteristics 

description: Large mammalian herbivores use a diverse array of strategies to survive predator encounters including flight, grouping, vigilance, warning signals, and fitness indicators. While anti-predator strategies appear to be driven by specific predator traits, no prior studies have rigorously evaluated whether predator hunting characteristics predict reactive anti-predator responses. We experimentally investigated behavioral decisions made by free-ranging impala, wildebeest, and zebra during encounters with model predators with different functional traits. Here, we provide data from 365 trials between the focal herbivore species and models of African lion (Panthera leo), spotted hyena (Crocuta crocuta), cheetah (Acinonyx jubatus), African wild dog (Lycaon pictus), and two non-threatening controls (impala Aepyceros melampus and Thomson's gazelle Eudorcas thomsonii).
description: See readme
DOI: 10.13020/0042-3s15
title: Data supporting "The C36 Laves phase in diblock polymer melts" 

description: Input and output files necessary to produce all of the results presented in the paper "The C36 Laves phase in diblock polymer melts." The Polymer Self-Consistent Field (PSCF) software package was used exclusively to generate these results.
DOI: 10.13020/d68h5z
title: Optical and photochemical data of temperate wetland samples collected in Minnesota, USA from 2014-August to 2015-October

description: Wetland surface water samples were collected from 39 sites throughout Minnesota, USA between 2014-August and 2015-October. Optical and photochemical parameters of the samples were measured under controlled laboratory conditions. The data were collected to identify environmental variables that constrain the yield of triplet excited states of dissolved natural organic matter. Apparent quantum yields of these triplet states were measured using the chemical probe, 2,4,6-trimethylphenol, under a broadband xenon-arc lamp with a 290-nm wavelength filter.
DOI: 10.13020/28th-gy94
title: Complete Data for: Desiccation tolerance of the invasive alga starry stonewort (Nitellopsis obtusa) as an indicator of overland spread risk

description: The ability of invasive macrophytes to survive out of water, i.e., their desiccation tolerance, is an important indicator of capacity for spread to new waterbodies through overland transport. Invasion by the alga starry stonewort (Nitellopsis obtusa [Desv. in Loisel.] J. Groves; Characeae) in North America is likely driven via overland transport, but little is known regarding its ability to remain viable out of water. We conducted laboratory and outdoor experiments to evaluate desiccation tolerance of N. obtusa propagules, including single stem fragments, small and large clumps of fragments, and bulbils (asexual reproductive structures). Propagules were removed from water after 15 min to 5 d to identify desiccation thresholds. The data from these experiments are documented and available here for public availability and use.
description: The files include data from an outdoor Nitellopsis obtusa desiccation experiment conducted in August 2017 and a laboratory desiccation experiment conducted in October 2017. There are separate data files for N. obtusa fragments and bulbils for each experiment. Additionally, compressed folders containing photographs of bulbils from the outdoor (August) experiment and of fragments from the laboratory (October) experiments are included. Please see the manuscript referenced below for a full description of the experimental methods and the Read Me file for a full description of the data files.
DOI: 10.13020/1f35-rn20
title: Data and R code supporting: Circular-Linear Copulae for Animal Movement Data

description: This repository contains data and R code (along with associated output from running the code) for fitting circular-linear copula to animal location data, supporting results reported in: Hodel, F. and J. Fieberg. Circular-Linear Copulae for Animal Movement Data. https://www.biorxiv.org/content/10.1101/2021.07.14.452404v1.full.pdf
description: See readme file included with the set of files.
DOI: 10.13020/d6gd7j
title: Range expansion of Lymantria dispar dispar (L.) (Lepidoptera: Erebidae) along its north-western margin in North America despite low predicted climatic suitability

description: Deposited here are .csv files containing data regarding experimental gypsy moth egg masses allowed to overwinter on the Grand Portage Reservation in Minnesota, and data from gypsy moth traps from 17 weather stations across the Arrowhead region of Minnesota. Geographic details and information on dataset variables can be located in the accompanying Readme.
DOI: 10.13020/kk4m-zx88
title: Effect of dissolved iron on CDOM and other optical properties for dissolved organic matter in lakes and rivers of the Upper Great Lakes states

description: These files contain the raw field and lab data collected during sampling of lakes and a few rivers in 2014-2016 to evaluate the importance of dissolved iron concentrations in affecting apparent levels of colored dissolved organic matter (CDOM), as measured spectrophotometrically by light absorption coefficient at 440 nm, a(440), with additional sampling in 2018 for more specific purposes. Approximately 450 sets of measurements were made on 280 lakes/rivers during the field seasons of 2014-2016, with most of the sampling in two ecoregions of Minnesota -- the Northern Lakes and Forests (NLF) and the North Central Hardwood Forests (NCHF). Additional samples collected in these two ecoregions in neighboring Wisconsin and Michigan in 2016 and in the Northern Minnesota Wetlands (NMW) ecoregion of Minnesota also are in the database. Data collected in 2018 included depth profiles of a(440), iron, dissolved organic carbon (DOC), and basic water quality parameters on three NLF lakes and samples on about 20 colored lakes and rivers to evaluate the importance of particulate iron as a component of total iron. Experimental data for addition of dissolved iron (Fe(III)) to six lakes also is included.
description: Three data files are included. The first contains the 2014-2016 field and lab data for 450 sets of measurements on 280 lakes across the NLF, NCHF and NMW ecoregions in Minnesota, Wisconsin, and Michigan. In addition to site names, location information (latitude/longitude), ecoregion, and sampling date, the file contains data on Secchi depth, CDOM measured as a(440), DOC, dissolved iron, chlorophyll-a, specific UV absorbance at 254 nm, SUVA(254), and spectral slopes. The second contains data on concentrations of total, dissolved and particulate iron fractions in 2018 samples from 19 high-CDOM sites (lakes and rivers) in the NLF ecoregion of northern Minnesota plus vertical profile information on a(440), dissolved iron, light penetration, and basic limnological parameters in three NLF lakes with widely varying a(440) levels. The third file contains a(440) and dissolved iron concentrations for six lakes from a laboratory experiment in which known amounts of dissolved iron were added to water samples from six water bodies with a wide range of a(440) levels plus additional spectral absorbance information from the samples.
DOI: 10.13020/d6v70k
title: Letter Transposition Project [GELLAB 2018]

description: We used a letter transposition (LT) technique to investigate letter position coding during reading in central and peripheral vision. Eighteen subjects read aloud sentences in a rapid serial visual presentation (RSVP) task. The tests contained a Baseline and three LT conditions with Initial, Internal and Final transpositions (e.g., “reading” to “erading”, “raeding” and “readign”). In each block 6 word-exposure times (central reading: 34, 51, 76, 113, 168 and 250 ms; peripheral reading: 53, 93, 165, 290, 511 and 900 ms) were measured in a random order, each tested 8 times. Eight blocks were tested, with each reading conditions tested once in both central and peripheral vision in a random order.
description: LT_RSVP_Raw.csv contains raw data from the RSVP task. See Readme.txt for documentation and trial exclusion criteria.
DOI: 10.13020/jjdx-1m95
title: Data for "Late Paleozoic depositional environments and sediment transport directions of the Itararé Group rocks from the state of São Paulo, Brazil, determined from rock magnetism and magnetic anisotropy" 

description: Data include: Anisotropy of Magnetic Susceptibility; magnetic hysteresis; low-temperature frequency-dependent magnetic susceptibility and remanence.
DOI: 10.13020/d65k5q
title: Bordes Biface Flake Models

description: This dataset consists of flake models representing an experimental archaeological reduction. This Bordes Biface was knapped by the late French prehistorian and archaeologist François Bordes.  It and its related flakes are housed at the University of Arizona's School of Anthropology. These models are of the flakes that were created, or knapped off, as Bordes made that biface. They were created for the purpose of studying scar directionality in archaeological chipped stone analysis, and formed part of the experimental side of a dissertation by Matthew D. Hunstiger.
description: Dataset consists of one ZIP archive containing 16 virtual flake models, each represented by one OBJ file with an accompanying MTL file, for 32 total files. The flakes were scanned with a NextEngine Inc.’s Desktop 3D Scanner SD (standard definition) or HD (high definition), and then virtually assembled using 3D Systems' Inc. Geomagic Design X and Verify. These models can be viewed with a variety of software, for example http://3dviewer.net/.
DOI: 10.13020/xnyv-x176
title: Data for Investigation of cyprinid herpes virus 3 (CyHV-3) disease periods and factors influencing CyHV-3 transmission in a low stocking density infection trial

description: Pathogens are the primary limitation to aquaculture production of fish and a major issue in consideration of the interface between cultured and wild populations of fishes worldwide. While rapid spread of fish pathogens between populations (wild or farmed) is generally anthropogenic and the result of trade, the mechanisms of transmission once a pathogen has been introduced to a fish population are not well understood. The most widespread pathogen impacting both aquaculture and wild populations of common carp (Cyprinus carpio, carp) is Cyprinid herpesvirus 3 (CyHV-3). To understand how CyHV-3 is transmitted in a population we conducted a series of infection trials, designed to determine the kinetics CyHV-3 infections, identify the contributions of direct and indirect forms of CyHV-3 transmission, and to determine the contributions of contact rate, viral load, pathogenicity, and contact type. We found that direct contact between fish was the primary mechanism of CyHV-3 transmission rather than transmission through contaminated water. Additionally, CyHV-3 transmission occurred primarily during the incubation period of CyHV-3, prior to the appearance of disease signs and disease-associated reduction in contact rate.
description: This is a singe xcel file containing several tabs of disease trial data. Tab has a single row of header with sortable data below.
DOI: 10.13020/qm6t-h952
title: SNP data of 18SPA092-1 and 25 reference isolates of the wheat stem rust fungus, Puccinia graminis f. sp. tritici

description: This dataset includes 1838 SNP loci of 26 isolates of the wheat stem rust fungus, Puccina graminis f .sp. tritici. This data was used to assess the genetic relationship of a unique fungal isolate (18SPA092-1, race TKHBK) derived from a wheat stem rust sample collected in Spain in 2018 with a set of 25 reference isolates from previously defined genetic clades. Results indicate that isolate 18SPA092-1 had a unique multilocus genotype and constitutes a previously unknown lineage. Data is being released now in conjunction with publication of a primary research paper that describes this work.
description: In the excel file, we provide the data of the 1838 loci from a custom Illumina SNP array (PgtSNP 3.0 K chip) after filtering loci with monomorphic and missing data.
DOI: 10.13020/cf80-eh04
title: Materials to re-create "Global Dynamics of the Stationary M2 Mode-1 Internal Tide" by Kelly et al.

description: These are the Matlab scripts and data files needed to replicate the figures in Kelly et al. 2020. The simulation data can be reproduced using the CSW source code at https://bitbucket.org/smkelly/ and the configuration files in the CSW config folder.
description: These are the Matlab scripts and data files needed to replicate the figures in Kelly et al. 2020. The simulation data can be reproduced using the CSW source code at https://bitbucket.org/smkelly/ and the configuration files in the CSW config folder.
DOI: 10.13020/3dh2-xh66
title: 16S RNA data for biofilm in contact with antimicrobial peptide coatings

description: Dual-indexed 16S rRNA gene amplicon sequencing using the V3-V4 region on the Illumina MiSeq platform 300PE for triplicate samples of biofilm from stocks of oral plaque sample grown on hydroxyapaptite discs without (CTRL) and with antimicrobial peptide (1018, DJK2, D-GL13K) coatings, treated and non-treated with PMA.
This data was collected as part of the NIDCR funded project R01-DE to determine the effects of antimicrobial peptides in the microbiome of biofilms from oral plaque stocks to prevent degradation of dental restorations.
The data was generated at the University of Minnesota Genomics Center and analyzed at the University of Minnesota Informatics Institute.
The data is released to be of public access following submission of a manuscript presenting and analyzing this data.
description: .html files and other associated files for the analysis of the Ilumina data
.txt files with log information for each file/sample
.xls file with analysis
.txt file with bacteria sequences used for analysis
DOI: 10.13020/559w-2z68
title: ACRL Conference Twitter IDs and Session Descriptions, 2011-2019

description: This data includes the (1) Twitter IDs for tweets that used the official conference hashtags at the Association of College & Research Libraries (ACRL) conferences from 2011 to 2019 and (2) the full-text titles and session descriptions for every conference session for the same conference and time period. These data supported a computational text analysis of the relationships between language used on Twitter and the discussion of the same topics as presented in formal program titles and descriptions.
description: IDs for tweets using official ACRL conference hashtags during the 2011 to 2019 ACRL conferences, along with the full-text conference session titles and descriptions from the same conference years.
DOI: 10.13020/g0xp-gf10
title: Data for Formate dependent heterodisulfide reduction in a Methanomicrobiales archaeon

description: Hydrogenotrophic methanogens produce CH4 using H2 as electron donor to reduce CO2. In the absence of H2, many are able to use formate or alcohols as alternate electron donors. Methanogens from the order Methanomicrobiales are capable of growth with H2, but many lack genes encoding hydrogenases that are typically found in other hydrogenotrophic methanogens. In an effort to better understand electron flow in methanogens from the Methanomicrobiales, we undertook a genetic and biochemical study of heterodisulfide reductase (Hdr) in Methanoculleus thermophilus. Hdr catalyzes an essential reaction by coupling the first and last steps of methanogenesis through flavin-based electron bifurcation. Hdr from M. thermophilus co-purified with formate dehydrogenase (Fdh) and only displayed activity when formate was supplied as an electron donor. We found no evidence of an Hdr associated hydrogenase, and H2 could not function as an electron donor, even with Hdr purified from cells grown on H2. We found that cells catalyze a formate hydrogenlyase activity that is likely essential for generating the formate needed for the Hdr reaction. Together, these results highlight the importance of formate as an electron donor for methanogenesis and suggest the ability to use formate is closely integrated into the methanogenic pathway in organisms from the order Methanomicrobiales.
description: The files contain the raw mass spectromery data of independent samples (biological replicates) of Elution fraction from His-purification of wild-type, MvhA-His, or HdrB-His strains.
DOI: 10.13020/d6fw25
title: Project ScOPE: School Obesity-related Policy Evaluation

description: The goal of this study was to evaluate the associations between school-level food and physical activity policy and practice environments and student diet, activity behaviors, and weight status using three surveys: The Minnesota School Health Profiles Principal Survey, the Minnesota School Health Profiles Teacher Survey, and the Minnesota Student Survey.
description: Survey data and documentation are primarily organized in three zipped folders. Files are organized according to the survey they are associated with. All Minnesota Student Survey (MSS) files, which include the original survey, data description, codebook, variable descriptions, and data files, are zipped into the folder labeled scope_mss.zip. The same is true for Minnesota School Health Profiles Principal (HPP) and Minnesota School Health Profiles Teacher (HPT) files. The additional unzipped files include a longer description of the ScOPE Project (scope_description.pdf) the formats required to run the program in a statistical program (scope_formats.sas and scope_formats.txt), and a list of all publications that resulted from the study (scope_publications.pdf).

Within zipped folders, the naming convention for files is as follows: [project]_[year]_[survey]_[description].[extension]. Year is represented as a four-digit number. The survey that the file is associated will be a standard code (mss, hpp, hpt). Description denotes whether the file contains data (referred to as “data”), documentation of variables (“variables” or “codebook”), or provides further description of the data (“datadescription” or “survey”). Where one element of the filename is unnecessary, for example, with the upper level zipped files, it is omitted.

Data were originally analyzed using SAS. Those file formats are included here; however, all files have also been converted to CSV which can be used in a variety of software, including SAS, SPSS, R, and STATA. It is important to note that when loading the Health Profiles survey data (HPP and HPT) into SAS, you must first run the scope_formats.sas file. If using another statistical software program, note that additional needed value labels are  in the scope_formats.txt file. Some of the Health Profiles variables are already formatted, so the formats need to be available in the statistical program to read the data in correctly.
DOI: 10.13020/xxnh-v194
title: Supporting data for "3D Bioprinted In Vitro Metastatic Models via Reconstruction of Tumor Microenvironments"

description: The data set includes the experimental data and the corresponding code files for " 3D Bioprinted In Vitro Metastatic Models via Reconstruction of Tumor Microenvironments", Fanben Meng, Carolyn M Meyer, Daeha Joung, Daniel A Vallera, Michael C McAlpine, Angela Panoskaltsis‐Mortari, Adv. Mater. 2019, 31 (10), 1806899. The development of 3D in vitro models capable of recapitulating native tumor microenvironments could improve the translatability of potential anticancer drugs and treatments. Here, 3D bioprinting techniques are used to build tumor constructs via precise placement of living cells, functional biomaterials, and programmable release capsules. This enables the spatiotemporal control of signaling molecular gradients, thereby dynamically modulating cellular behaviors at a local level. Vascularized tumor models are created to mimic key steps of cancer dissemination (invasion, intravasation, and angiogenesis), based on guided migration of tumor cells and endothelial cells in the context of stromal cells and growth factors. The utility of the metastatic models for drug screening is demonstrated by evaluating the anticancer efficacy of immunotoxins. These 3D vascularized tumor tissues provide a proof-of-concept platform to i) fundamentally explore the molecular mechanisms of tumor progression and metastasis, and ii) preclinically identify therapeutic agents and screen anticancer drugs.
description: A full description of the data set is included in the file "Readme_Meng_Tumor_Model.txt".