cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11785221
title: Additional file 3 of A systemic approach to screening high-throughput RT-qPCR data for a suitable set of reference circulating miRNAs

description: Additional file 3. Validation dataset 2. Contains results of the qPCR profiling of circulating miRNAs in people with head and neck tumors. Samples are in columns, miRNAs are in verses.
DOI: 10.6084/m9.figshare.11785230.v1
title: Additional file 4 of A systemic approach to screening high-throughput RT-qPCR data for a suitable set of reference circulating miRNAs

description: Additional file 4. Validation dataset GSE109888. Publicly available on Gene Expression Omnibus platform under the accession number GSE109888. Contains results of the qPCR profiling of circulating miRNAs in people with rheumatoid arthritisÂ [38]. Accession link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE109888.
DOI: 10.6084/m9.figshare.11785215
title: Additional file 3 of Prognostic DNA methylation markers for hormone receptor breast cancer: a systematic review

description: Additional file 3: Table S3. studies, studied markers and outcomes. Review Data Table. Complete review data containing all included studies, markers and outcome values.
DOI: 10.6084/m9.figshare.11785212
title: Additional file 2 of A systemic approach to screening high-throughput RT-qPCR data for a suitable set of reference circulating miRNAs

description: Additional file 2. Validation dataset 1. Contains results of the qPCR profiling of circulating miRNAs in people with head and neck tumors. Samples are in columns, miRNAs are in verses.
DOI: 10.6084/m9.figshare.11785215.v1
title: Additional file 3 of Prognostic DNA methylation markers for hormone receptor breast cancer: a systematic review

description: Additional file 3: Table S3. studies, studied markers and outcomes. Review Data Table. Complete review data containing all included studies, markers and outcome values.
DOI: 10.6084/m9.figshare.11785221.v1
title: Additional file 3 of A systemic approach to screening high-throughput RT-qPCR data for a suitable set of reference circulating miRNAs

description: Additional file 3. Validation dataset 2. Contains results of the qPCR profiling of circulating miRNAs in people with head and neck tumors. Samples are in columns, miRNAs are in verses.
DOI: 10.6084/m9.figshare.11785212.v1
title: Additional file 2 of A systemic approach to screening high-throughput RT-qPCR data for a suitable set of reference circulating miRNAs

description: Additional file 2. Validation dataset 1. Contains results of the qPCR profiling of circulating miRNAs in people with head and neck tumors. Samples are in columns, miRNAs are in verses.
DOI: 10.6084/m9.figshare.11785200
title: Additional file 3 of Outer membrane protein A (OmpA) of extraintestinal pathogenic Escherichia coli

description: Additional file 3. Sequences for OmpA analyzed including the strain ID, ompA sequence, non dimer and dimer regions, polymorphisms identified, sub pathotype of the strains, polymorphism pattern ID, and phylogenetic group.
DOI: 10.6084/m9.figshare.11785203
title: Additional file 1 of A systemic approach to screening high-throughput RT-qPCR data for a suitable set of reference circulating miRNAs

description: Additional file 1. Supplementary tables. Contains supplementary tables created by the authors.
DOI: 10.6084/m9.figshare.11785200.v1
title: Additional file 3 of Outer membrane protein A (OmpA) of extraintestinal pathogenic Escherichia coli

description: Additional file 3. Sequences for OmpA analyzed including the strain ID, ompA sequence, non dimer and dimer regions, polymorphisms identified, sub pathotype of the strains, polymorphism pattern ID, and phylogenetic group.
DOI: 10.6084/m9.figshare.11785203.v1
title: Additional file 1 of A systemic approach to screening high-throughput RT-qPCR data for a suitable set of reference circulating miRNAs

description: Additional file 1. Supplementary tables. Contains supplementary tables created by the authors.
DOI: 10.6084/m9.figshare.11785005
title: Additional file 1 of Prevention and management of diarrhea associated with naldemedine among patients receiving opioids: a retrospective cohort study

description: Additional file 1:Â Baseline characteristics and outcomes of individual study participants.
DOI: 10.6084/m9.figshare.11785005.v1
title: Additional file 1 of Prevention and management of diarrhea associated with naldemedine among patients receiving opioids: a retrospective cohort study

description: Additional file 1:Â Baseline characteristics and outcomes of individual study participants.
DOI: 10.15468/rktffs
title: Anthyllis cytisoides L. (Fabaceae), new to the Italian native flora

description: This dataset contains the digitized treatments in Plazi based on the original journal article Selvi, Federico (2020): Anthyllis cytisoides L. (Fabaceae), new to the Italian native flora. Italian Botanist 10: 25-31, DOI: http://dx.doi.org/10.3897/italianbotanist.10.55154, URL: http://dx.doi.org/10.3897/italianbotanist.10.55154
DOI: 10.6084/m9.figshare.11784822
title: Additional file 8 of Genome-wide association study reveals that different pathways contribute to grain quality variation in sorghum (Sorghum bicolor)

description: Additional file 8: Table S6. The list of total candidate genes detected by grain quality traitsâ€™ GWAS.
DOI: 10.6073/pasta/25ae07a87d5764c8eca62b88d695dd50
title: SBC LTER: Reef: Long-term experiment: Kelp removal: Detritus biomass

description: These data describe the abundance of macroalgal detritus (grams wet mass m-2) at SBC LTER long-term kelp removal experiment sites. Detritus is collected in six permanent 1 m2 quadrats positioned uniformly along 40 m transects in each sampling plot. Sample collections are brought back to the laboratory, identified to species and weighed wet. Detritus is not collected at continuous removal transects. The kelp removal experiment was initiated in 2008 at four reef sites along the mainland coast of the Santa Barbara Channel. The following three giant kelp manipulations are maintained in sampling plots at each site: - Control: Macrocystis pyriferais left intact in a 2000 m2 plot. - Annual removal: Macrocystis pyriferais removed from an adjacent 2000 m2 plot once each winter and allowed to re-colonize over the course of the year. - Continuous removal: Macrocystis pyriferais removed from a 200 m2 area within the 2000 m2 plot on each sampling date. See Methods for more information.
DOI: 10.6084/m9.figshare.11784822.v1
title: Additional file 8 of Genome-wide association study reveals that different pathways contribute to grain quality variation in sorghum (Sorghum bicolor)

description: Additional file 8: Table S6. The list of total candidate genes detected by grain quality traitsâ€™ GWAS.
DOI: 10.6084/m9.figshare.11784804
title: Additional file 7 of Genome-wide association study reveals that different pathways contribute to grain quality variation in sorghum (Sorghum bicolor)

description: Additional file 7: Table S5. Variation of grain quality traits across six subpopulations of the association panel.
DOI: 10.6084/m9.figshare.11784804.v1
title: Additional file 7 of Genome-wide association study reveals that different pathways contribute to grain quality variation in sorghum (Sorghum bicolor)

description: Additional file 7: Table S5. Variation of grain quality traits across six subpopulations of the association panel.
DOI: 10.6084/m9.figshare.11784798
title: Additional file 6 of Genome-wide association study reveals that different pathways contribute to grain quality variation in sorghum (Sorghum bicolor)

description: Additional file 6: Table S4. 698 a priori candidate genes in the proteinogenic amino acids biosynthesis and degradation pathway.
DOI: 10.6084/m9.figshare.11784792
title: Additional file 5 of Genome-wide association study reveals that different pathways contribute to grain quality variation in sorghum (Sorghum bicolor)

description: Additional file 5: Table S3. Lists of amino acids, absolute and derived traits calculated from the sum of all amino acids and their biochemical interactions.
DOI: 10.6084/m9.figshare.11784783
title: Additional file 3 of Genome-wide association study reveals that different pathways contribute to grain quality variation in sorghum (Sorghum bicolor)

description: Additional file 3: Table S1. List of 196 worldwide accessions used in this study.
DOI: 10.6084/m9.figshare.11784789
title: Additional file 4 of Genome-wide association study reveals that different pathways contribute to grain quality variation in sorghum (Sorghum bicolor)

description: Additional file 4: Table S2. The mean values of 17 amino acids, tannins and starch.
DOI: 10.6084/m9.figshare.11784783.v1
title: Additional file 3 of Genome-wide association study reveals that different pathways contribute to grain quality variation in sorghum (Sorghum bicolor)

description: Additional file 3: Table S1. List of 196 worldwide accessions used in this study.
DOI: 10.6084/m9.figshare.11784789.v1
title: Additional file 4 of Genome-wide association study reveals that different pathways contribute to grain quality variation in sorghum (Sorghum bicolor)

description: Additional file 4: Table S2. The mean values of 17 amino acids, tannins and starch.
DOI: 10.6084/m9.figshare.11784726
title: Additional file 1 of Choline supplementation prevents diet induced gut mucosa lipid accumulation in post-smolt Atlantic salmon (Salmo salar L.)

description: Additional file 1. Primer pair sequences, efficiency, amplicon size and annealing temperature for the genes used for real-time PCR.
DOI: 10.6084/m9.figshare.11784729
title: Additional file 2 of Choline supplementation prevents diet induced gut mucosa lipid accumulation in post-smolt Atlantic salmon (Salmo salar L.)

description: Additional file 2. Differentially expressed genes between hepatic transcriptomes of fish fed the low fishmeal diet (LF) and fish fed the choline supplemented diet (LFC).
DOI: 10.6084/m9.figshare.11784723
title: Additional file 9 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 9: Table S4. Guide-level MAGeCK output (Gene Library/Cas9/Untreated).
DOI: 10.6084/m9.figshare.11784726.v1
title: Additional file 1 of Choline supplementation prevents diet induced gut mucosa lipid accumulation in post-smolt Atlantic salmon (Salmo salar L.)

description: Additional file 1. Primer pair sequences, efficiency, amplicon size and annealing temperature for the genes used for real-time PCR.
DOI: 10.6084/m9.figshare.11784729.v1
title: Additional file 2 of Choline supplementation prevents diet induced gut mucosa lipid accumulation in post-smolt Atlantic salmon (Salmo salar L.)

description: Additional file 2. Differentially expressed genes between hepatic transcriptomes of fish fed the low fishmeal diet (LF) and fish fed the choline supplemented diet (LFC).
DOI: 10.6084/m9.figshare.11784720
title: Additional file 8 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 8: Table S3. CRISPR screen raw read counts (Gene Library/Cas9).
DOI: 10.6084/m9.figshare.11784714
title: Additional file 7 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 7: Table S2. CRISPR library targeting p53-regulated protein-coding genes.
DOI: 10.6084/m9.figshare.11784720.v1
title: Additional file 8 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 8: Table S3. CRISPR screen raw read counts (Gene Library/Cas9).
DOI: 10.6084/m9.figshare.11784723.v1
title: Additional file 9 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 9: Table S4. Guide-level MAGeCK output (Gene Library/Cas9/Untreated).
DOI: 10.6084/m9.figshare.11784711
title: Additional file 6 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 6: Table S1. Project Achilles â€“ p53 status and enrichment data.
DOI: 10.6084/m9.figshare.11784714.v1
title: Additional file 7 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 7: Table S2. CRISPR library targeting p53-regulated protein-coding genes.
DOI: 10.6084/m9.figshare.11784711.v1
title: Additional file 6 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 6: Table S1. Project Achilles â€“ p53 status and enrichment data.
DOI: 10.6084/m9.figshare.11784675
title: Additional file 24 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 24: Table S19. Sequences of sgRNAs used in validation experiments.
DOI: 10.6084/m9.figshare.11784672
title: Additional file 23 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 23: Table S18. Peak-level MAGeCK output (Peak Library/Cas9/ Doxorubicin).
DOI: 10.6084/m9.figshare.11784675.v1
title: Additional file 24 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 24: Table S19. Sequences of sgRNAs used in validation experiments.
DOI: 10.6084/m9.figshare.11784672.v1
title: Additional file 23 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 23: Table S18. Peak-level MAGeCK output (Peak Library/Cas9/ Doxorubicin).
DOI: 10.6084/m9.figshare.11784663
title: Additional file 22 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 22: Table S17. Guide-level MAGeCK output (Peak Library/Cas9/ Doxorubicin).
DOI: 10.6084/m9.figshare.11784663.v1
title: Additional file 22 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 22: Table S17. Guide-level MAGeCK output (Peak Library/Cas9/ Doxorubicin).
DOI: 10.6084/m9.figshare.11784651
title: Additional file 20 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 20: Table S15. Guide-level MAGeCK output (Peak Library/dCas9-KRAB/ Doxorubicin).
DOI: 10.6084/m9.figshare.11784651.v1
title: Additional file 20 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 20: Table S15. Guide-level MAGeCK output (Peak Library/dCas9-KRAB/ Doxorubicin).
DOI: 10.6084/m9.figshare.11784657
title: Additional file 21 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 21: Table S16. Peak-level MAGeCK output (Peak Library/dCas9-KRAB/Doxorubicin)
DOI: 10.6084/m9.figshare.11784657.v1
title: Additional file 21 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 21: Table S16. Peak-level MAGeCK output (Peak Library/dCas9-KRAB/Doxorubicin)
DOI: 10.6084/m9.figshare.11784630
title: Additional file 18 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 18: Table S13. Guide-level MAGeCK output (Gene Library/Cas9/ Doxorubicin).
DOI: 10.6084/m9.figshare.11784636
title: Additional file 19 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 19: Table S14. Gene-level MAGeCK output (Gene Library/Cas9/Doxorubicin).
DOI: 10.6084/m9.figshare.11784630.v1
title: Additional file 18 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 18: Table S13. Guide-level MAGeCK output (Gene Library/Cas9/ Doxorubicin).
DOI: 10.6084/m9.figshare.11784636.v1
title: Additional file 19 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 19: Table S14. Gene-level MAGeCK output (Gene Library/Cas9/Doxorubicin).
DOI: 10.6084/m9.figshare.11784621
title: Additional file 16 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 16: Table S11. Guide-level MAGeCK output (Peak Library/Cas9/Untreated).
DOI: 10.6084/m9.figshare.11784627
title: Additional file 17 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 17: Table S12. Peak-level MAGeCK output (Peak Library/Cas9/Untreated).
DOI: 10.6084/m9.figshare.11784621.v1
title: Additional file 16 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 16: Table S11. Guide-level MAGeCK output (Peak Library/Cas9/Untreated).
DOI: 10.6084/m9.figshare.11784612
title: Additional file 15 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 15:Table S10. CRISPR screen raw read counts (Peak Library/Cas9).
DOI: 10.6084/m9.figshare.11784627.v1
title: Additional file 17 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 17: Table S12. Peak-level MAGeCK output (Peak Library/Cas9/Untreated).
DOI: 10.6084/m9.figshare.11784612.v1
title: Additional file 15 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 15:Table S10. CRISPR screen raw read counts (Peak Library/Cas9).
DOI: 10.6084/m9.figshare.11784606
title: Additional file 14 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 14: Table S9. Peak-level MAGeCK output (Peak Library/dCas9-KRAB/Untreated).
DOI: 10.6084/m9.figshare.11784594
title: Additional file 13 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 13: Table S8. Guide-level MAGeCK output (Peak Library/dCas9-KRAB/Untreated).
DOI: 10.6084/m9.figshare.11784606.v1
title: Additional file 14 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 14: Table S9. Peak-level MAGeCK output (Peak Library/dCas9-KRAB/Untreated).
DOI: 10.6073/pasta/5a1e9ef03aa47bd2225c0bb98a02a63b
title: SBC LTER: Reef: Long-term experiment: Kelp removal: Urchin size frequency distribution

description: These data describe the size frequency distribution of red and purple sea urchins at SBC LTER long-term kelp removal experiment sites. The diameter of the test (shell without spines) is recorded in centimeters to the nearest 0.5 cm for 50 red and 50 purple sea urchins located in 40 m x 2 m transects in each sampling plot. These data can be combined with size-mass relationships established in the laboratory to provide a non-destructive estimate of red and urchin dry mass. The kelp removal experiment was initiated in 2008 at selected reef sites along the mainland coast of the Santa Barbara Channel. The following three giant kelp manipulations are maintained in sampling plots at each site: - Control: Macrocystis pyriferais left intact in a 2000 m2 plot. - Annual removal: Macrocystis pyriferais removed from an adjacent 2000 m2 plot once each winter and allowed to re-colonize over the course of the year. - Continuous removal: Macrocystis pyriferais removed from a 200 m2 area within the 2000 m2 plot on each sampling date. See Methods for more information.
DOI: 10.6084/m9.figshare.11784594.v1
title: Additional file 13 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 13: Table S8. Guide-level MAGeCK output (Peak Library/dCas9-KRAB/Untreated).
DOI: 10.6084/m9.figshare.11784585
title: Additional file 12 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 12: Table S7. CRISPR screen raw read counts (Peak Library/dCas9-KRAB).
DOI: 10.6084/m9.figshare.11784585.v1
title: Additional file 12 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 12: Table S7. CRISPR screen raw read counts (Peak Library/dCas9-KRAB).
DOI: 10.6084/m9.figshare.11784567
title: Additional file 10 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 10: Table S5. Gene-level MAGeCK output (Gene Library/Cas9/Untreated).
DOI: 10.6084/m9.figshare.11784576
title: Additional file 11 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 11: Table S6. CRISPR library targeting p53 binding sites.
DOI: 10.6084/m9.figshare.11784567.v1
title: Additional file 10 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 10: Table S5. Gene-level MAGeCK output (Gene Library/Cas9/Untreated).
DOI: 10.6084/m9.figshare.11784576.v1
title: Additional file 11 of Identification of functional regulatory elements in the human genome using pooled CRISPR screens

description: Additional file 11: Table S6. CRISPR library targeting p53 binding sites.
DOI: 10.6084/m9.figshare.11784477
title: Additional file 1 of Gestational diabetes and the human salivary microbiota: a longitudinal study during pregnancy and postpartum

description: Additional file 1: Table S1. Supplementary third trimester characteristics between pregnant women with GDM and glucose-tolerant pregnant women. Table S2. Indications for referral to an oral glucose tolerance test. Table S3. Supplementary descriptive postpartum. Table S4. Differentially abundant OTUs during pregnancy and postpartum between women with or without GDM. Table S5. Association between genera and glycaemic traits in third trimester of pregnancy. Table S6. Operational taxonomic units associated with glycaemic traits in pregnant women independent of GDM status and unadjusted for pre-pregnancy BMI.
DOI: 10.6084/m9.figshare.11784477.v1
title: Additional file 1 of Gestational diabetes and the human salivary microbiota: a longitudinal study during pregnancy and postpartum

description: Additional file 1: Table S1. Supplementary third trimester characteristics between pregnant women with GDM and glucose-tolerant pregnant women. Table S2. Indications for referral to an oral glucose tolerance test. Table S3. Supplementary descriptive postpartum. Table S4. Differentially abundant OTUs during pregnancy and postpartum between women with or without GDM. Table S5. Association between genera and glycaemic traits in third trimester of pregnancy. Table S6. Operational taxonomic units associated with glycaemic traits in pregnant women independent of GDM status and unadjusted for pre-pregnancy BMI.
DOI: 10.6084/m9.figshare.11784429
title: Additional file 3 of PDAC-ANN: an artificial neural network to predict pancreatic ductal adenocarcinoma based on gene expression

description: Additional file 3: Table S2. Excel file with links to protein expression level from the CG and links to immunohistochemical images available in HPA.
DOI: 10.6084/m9.figshare.11784429.v1
title: Additional file 3 of PDAC-ANN: an artificial neural network to predict pancreatic ductal adenocarcinoma based on gene expression

description: Additional file 3: Table S2. Excel file with links to protein expression level from the CG and links to immunohistochemical images available in HPA.