cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hjgrcs
title: Occurrence Download

description: A dataset containing 579 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Geometry POLYGON((78.89804 18.06497,146.10196 18.06497,146.10196 44.93503,78.89804 44.93503,78.89804 18.06497))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Mustela sibirica, Elaphe carinata)"
 ]
}

 The dataset includes 579 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008362-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2379t9
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Haliclona caerulea",
 "Country is Mexico",
 "HasCoordinate is true"
 ]
}

 The dataset includes 127 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008361-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18538449
title: Additional analysis with ConNIS

description: ## Reproducibility note


This repository contains a focused re-analysis of eight published Tn5-based TraDIS/Tn-Seq studies using the ConNIS method:


- https://academic.oup.com/hr/article/12/9/uhaf160/8169913#528502292

- https://www.nature.com/articles/s41467-018-07379-4

- https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2016.01288/full

- https://www.pnas.org/doi/10.1073/pnas.1220225110

- https://journals.asm.org/doi/10.1128/jb.00164-25

- https://www.sciencedirect.com/science/article/pii/S2211124723008586

- https://journals.asm.org/doi/10.1128/spectrum.02162-22

- https://journals.asm.org/doi/10.1128/jb.00771-15


For each study, the corresponding pipeline script in this repository documents the steps used to generate (i) an insertion-site list and (ii) a gene annotation table (gene/locus tag, start, stop) as input to ConNIS.


Upstream processing from raw sequencing reads to insertion-site maps typically involves multiple bioinformatic steps (e.g., filtering/trimming, mapping, QC, counting) and may depend on study-specific choices (e.g., transposon construct, read structure, mapping parameters). Where the original publications did not provide a fully specified, ready-to-run pipeline (or the exact intermediate files), we implemented a best-effort reconstruction based on the Methods and supplementary information, aiming to match the described procedures as closely as possible.


As a consequence, the exact insertion-site maps produced here may differ from the (potentially unpublished) internal processing used in the original studies. The goal of this repository is therefore to provide a transparent and reproducible re-analysis workflow and corresponding ConNIS results, rather than to claim bitwise identity with the original insertion-site calls.
DOI: 10.5281/zenodo.18538450
title: Additional analysis with ConNIS

description: ## Reproducibility note


This repository contains a focused re-analysis of eight published Tn5-based TraDIS/Tn-Seq studies using the ConNIS method:


- https://academic.oup.com/hr/article/12/9/uhaf160/8169913#528502292

- https://www.nature.com/articles/s41467-018-07379-4

- https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2016.01288/full

- https://www.pnas.org/doi/10.1073/pnas.1220225110

- https://journals.asm.org/doi/10.1128/jb.00164-25

- https://www.sciencedirect.com/science/article/pii/S2211124723008586

- https://journals.asm.org/doi/10.1128/spectrum.02162-22

- https://journals.asm.org/doi/10.1128/jb.00771-15


For each study, the corresponding pipeline script in this repository documents the steps used to generate (i) an insertion-site list and (ii) a gene annotation table (gene/locus tag, start, stop) as input to ConNIS.


Upstream processing from raw sequencing reads to insertion-site maps typically involves multiple bioinformatic steps (e.g., filtering/trimming, mapping, QC, counting) and may depend on study-specific choices (e.g., transposon construct, read structure, mapping parameters). Where the original publications did not provide a fully specified, ready-to-run pipeline (or the exact intermediate files), we implemented a best-effort reconstruction based on the Methods and supplementary information, aiming to match the described procedures as closely as possible.


As a consequence, the exact insertion-site maps produced here may differ from the (potentially unpublished) internal processing used in the original studies. The goal of this repository is therefore to provide a transparent and reproducible re-analysis workflow and corresponding ConNIS results, rather than to claim bitwise identity with the original insertion-site calls.
DOI: 10.5281/zenodo.17270845
title: Data for review "Ancient genomes give insight into 160,000 years of East Asian population dynamics and biological adaptation"

description: Advances in ancient DNA research have transformed our understanding of human evolution, admixture-driven adaptation, and genetic underpinnings of traits. However, the evolutionary dynamics of Paleolithic and Neolithic East Asian remain fragmented. This review synthesizes 160,000 years of population interactions, highlighting three waves of archaic introgression and extensive population admixtures. We examine how ancestral lineages and agricultural innovations shaped East Asian populations, while migrations and admixture events linked to shifting subsistence strategies contributed to genomic and phenotypic diversity. Adaptive signatures from ancient genomes further elucidate the underpinnings of high-altitude adaptation, pigmentation, and morphological traits, offering new insights into human evolutionary biology.
DOI: 10.5281/zenodo.17270846
title: Data for review "Ancient genomes give insight into 160,000 years of East Asian population dynamics and biological adaptation"

description: Advances in ancient DNA research have transformed our understanding of human evolution, admixture-driven adaptation, and genetic underpinnings of traits. However, the evolutionary dynamics of Paleolithic and Neolithic East Asian remain fragmented. This review synthesizes 160,000 years of population interactions, highlighting three waves of archaic introgression and extensive population admixtures. We examine how ancestral lineages and agricultural innovations shaped East Asian populations, while migrations and admixture events linked to shifting subsistence strategies contributed to genomic and phenotypic diversity. Adaptive signatures from ancient genomes further elucidate the underpinnings of high-altitude adaptation, pigmentation, and morphological traits, offering new insights into human evolutionary biology.
DOI: 10.15468/dl.kkjcea
title: Occurrence Download

description: A dataset containing 181069 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Swiss National Bat Databank: Regional Coordination Western Switzerland (CCO)"
 ]
}

 The dataset includes 181069 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002316-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7xz233
title: Occurrence Download

description: A dataset containing 79254 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Swiss National Bat Databank: Regional Coordination Eastern Switzerland (KOF)"
 ]
}

 The dataset includes 79254 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002317-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13130/rd_unimi/bgpjma/ykhb0m
title: FIGURE 1.tab
DOI: 10.13130/rd_unimi/bgpjma/6cggkf
title: Figure 6 A-B-C additional data.pdf
DOI: 10.13130/rd_unimi/bgpjma/ndgetw
title: FIGURE 2.tab
DOI: 10.13130/rd_unimi/bgpjma/ytjmfi
title: Data Figure 6 D.pdf
DOI: 10.13130/rd_unimi/bgpjma/z9bopt
title: Data Figure 6 A-B-C.pdf
DOI: 10.13130/rd_unimi/bgpjma
title: Reducing tumor heterogeneity with TTFields prevents glioblastoma recurrence through a combination therapy
title: Preventing glioblastoma recurrence with combined therapy

description: Raw data referred to the manuscript "Reducing tumor heterogeneity with TTFields prevents glioblastoma recurrence through a combination therapy" submitted for publication.
Glioblastoma recurrence reflects dynamic tumor adaptation to therapy. TTFields stimulation promotes mesenchymal reprogramming and upregulates tmCLIC1 in recurrent tumors. tmCLIC1 inhibition, combined with TTFields, suppresses tumor growth and prevents recurrent glioblastoma.
The uploaded files' raw data are related to the figures of the paper. Additional information, results of each experiment and quantification of all the measurements reportend in the main manuscript.
DOI: 10.5281/zenodo.18537639
title: Data for "Beyond Idealized Geometry: Settling Dynamics of Natural Irregularly-Shaped Sediment Particles"

description: There are two folders:

'Data' contains data and corresponding matlab (.m) files used to produce the manuscript’s figures.

'Case' contains an example for particle settling simulation.
DOI: 10.5281/zenodo.18537640
title: Data for "Beyond Idealized Geometry: Settling Dynamics of Natural Irregularly-Shaped Sediment Particles"

description: There are two folders:

'Data' contains data and corresponding matlab (.m) files used to produce the manuscript’s figures.

'Case' contains an example for particle settling simulation.
DOI: 10.15468/dl.gnz7xw
title: Occurrence Download

description: A dataset containing 284 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((8.89762 41.67918,8.89068 41.67505,8.89812 41.66697,8.90924 41.66915,8.90919 41.6799,8.89762 41.67918))",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 284 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002331-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9w8y7m
title: Occurrence Download

description: A dataset containing 355 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Ardisia primulifolia"
 ]
}

 The dataset includes 355 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002336-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31292899.v1
title: Dataset for <b>Microalgae on anuran skin: evidence of potential epizoochorous dispersal in coastal wetlands</b>

description: This dataset contains observational records from the study <i>“Microalgae on anuran skin: evidence of potential epizoochorous dispersal in coastal wetlands”</i>, including 41 anuran individuals that were found to carry freshwater microalgae on their skin. These individuals represent six species (from the families Bufonidae, Odontophrynidae, Hylidae, and Leptodactylidae) sampled in grassland and/or dune wetlands of the southern Brazilian Coastal Plain. Data were collected with appropriate permits and include samples from both public and private properties.
DOI: 10.15468/dl.mayqeq
title: Occurrence Download

description: A dataset containing 21712 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Passer domesticus domesticus"
 ]
}

 The dataset includes 21712 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002335-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31292899
title: Dataset for <b>Microalgae on anuran skin: evidence of potential epizoochorous dispersal in coastal wetlands</b>

description: This dataset contains observational records from the study <i>“Microalgae on anuran skin: evidence of potential epizoochorous dispersal in coastal wetlands”</i>, including 41 anuran individuals that were found to carry freshwater microalgae on their skin. These individuals represent six species (from the families Bufonidae, Odontophrynidae, Hylidae, and Leptodactylidae) sampled in grassland and/or dune wetlands of the southern Brazilian Coastal Plain. Data were collected with appropriate permits and include samples from both public and private properties.
DOI: 10.5281/zenodo.18523069
title: Artifact for FM'26 paper: Performance Heuristics for GR(1) Unrealizable Core Computation

description: Artifact for FM'26 paper: Performance Heuristics for GR(1) Unrealizable Core Computation
DOI: 10.17635/lancaster/researchdata/279
title: International Timetabling Competition 2019 approximation of Lancaster University 2023/2024 term.

description: Dataset containing an anonymised approximation of a year-long term at
 Lancaster University. The original data before processing was provided by
 the timetabling team at Lancaster University. This data has been
 processed, with input from the timetabling team, into this dataset to
 protect the anonymity of staff and students at Lancaster University.
 Chapter 4 in Davison, M. (2025), Modelling and Solving Multi-objective
 University Course Timetabling Problems,
 [https://doi.org/10.17635/lancaster/thesis/3040] provides further details
 about the transformation and anonymisation process. The data is an XML
 (eXtensible Markup Language) file with a structure specified by Müller,
 T., Rudová, H. & Müllerová, Z. Real-world university course
 timetabling at the International Timetabling Competition 2019
 [https://doi.org/10.1007/s10951-023-00801-w]. There are some further
 modifications outlined by the previously mentioned Davison, M. (2025),
 relating to the hybrid teaching modelling in the same work.Description
DOI: 10.15468/dl.udbewz
title: Occurrence Download

description: A dataset containing 1997 records in GBIF matching the query:

 SELECT gbifid, datasetkey, specieskey, kingdom, phylum, class, "order", family, genus, species, scientificname, decimallatitude, decimallongitude, eventdate, institutioncode, "year" AS obs_year, basisofrecord, coordinateuncertaintyinmeters, issue
 FROM occurrence
 WHERE
 decimallatitude IS NOT NULL
 AND decimallongitude IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND coordinateuncertaintyinmeters IS NOT NULL
 AND coordinateuncertaintyinmeters &gt; 0
 AND coordinateuncertaintyinmeters &lt;= 200.0
 AND decimallatitude &gt;= 41.89415215079384
 AND decimallatitude &lt;= 46.479780028101516
 AND decimallongitude &gt;= 53.94667277126278
 AND decimallongitude &lt;= 62.94398091796209
 AND GBIF_Within('POLYGON ((62.943981 41.894152, 62.943981 46.479780, 53.946673 46.479780, 53.946673 41.894152, 62.943981 41.894152))', decimallatitude, decimallongitude) = TRUE
 

 The dataset's 1997 records were derived from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002321-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17714207
title: Herbarium specimens scans (GLM) and associated label data used for zero-shot handwriting recognition of historical herbarium labels

description: The dataset contains 200 images of herbarium specimens from the Herbarium Senckenbergianum Görlitz (GLM) and the associated label data used by Körschens et al. for their study "Large Language Vision Models for Zero-Shot Handwriting Recognition of Historical Herbarium Labels". One half of the specimen images features handwriten labels, the other half printed labels. All specimens are part of the virtual herbarium of the flora of Germany (https://virtherbard.senckenberg.de). The csv-arquives with the associated label data are an corrected version of the database entries for the label data from the virtual herbarium. The original database entries are not always completely identical to the information on the labels, as additional information (e.g. current species names, full first names instead of initials, information on the natural region) had been added during the digitisation of the data. For the study the database entries were therefore partly adjusted back to the information visible on the label. Date and name information was not corrected back.
DOI: 10.5281/zenodo.17714208
title: Herbarium specimens scans (GLM) and associated label data used for zero-shot handwriting recognition of historical herbarium labels

description: The dataset contains 200 images of herbarium specimens from the Herbarium Senckenbergianum Görlitz (GLM) and the associated label data used by Körschens et al. for their study "Large Language Vision Models for Zero-Shot Handwriting Recognition of Historical Herbarium Labels". One half of the specimen images features handwriten labels, the other half printed labels. All specimens are part of the virtual herbarium of the flora of Germany (https://virtherbard.senckenberg.de). The csv-arquives with the associated label data are an corrected version of the database entries for the label data from the virtual herbarium. The original database entries are not always completely identical to the information on the labels, as additional information (e.g. current species names, full first names instead of initials, information on the natural region) had been added during the digitisation of the data. For the study the database entries were therefore partly adjusted back to the information visible on the label. Date and name information was not corrected back.
DOI: 10.15468/dl.he77sq
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Livistona jenkinsiana"
 ]
}

 The dataset includes 16 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002337-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48544/ac363926-cd8e-4fc6-aa8d-599ba651576c
title: Beweegreiskompas Zeeland
DOI: 10.15468/dl.m8xksa
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Machilus gamblei"
 ]
}

 The dataset includes 10 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002338-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9572u2
title: Occurrence Download

description: A dataset containing 19149974 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Russian Federation"
 ]
}

 The dataset includes 19149974 records from 4040 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002304-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzphxr
title: Occurrence Download

description: A dataset containing 348269 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Reef Life Survey: Global reef fish dataset"
 ]
}

 The dataset includes 348269 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006783-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.frj36k
title: Occurrence Download

description: A dataset containing 9356 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ursus maritimus Phipps, 1774"
 ]
}

 The dataset includes 9356 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006786-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9auysy
title: Occurrence Download

description: A dataset listing the 2312 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-74.87089 5.29167,-74.84427 5.29408,-74.8237 5.32421,-74.82612 5.35553,-74.83943 5.40493,-74.8721 5.41939,-74.90236 5.43384,-74.92293 5.46396,-74.95197 5.50612,-74.98465 5.50853,-75.03305 5.51455,-75.07783 5.49046,-75.08993 5.46878,-75.07541 5.42782,-75.04031 5.36035,-75.01248 5.33264,-74.99312 5.33746,-74.96286 5.29529,-74.87089 5.29167))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 2312 records were derived from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006784-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7796/indepth.bf041.cmd2012.v1
title: Ouagadougou HDSS INDEPTH Core Dataset 2009-2012 Release 2015
DOI: 10.15468/dl.qrkr3s
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cuscuta atrans Feinbrun",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0294888-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7796/indepth.ci011.cmd2012.v1
title: Taabo HDSS Core Dataset 2009-2012 Release 2015
DOI: 10.15468/dl.qg9t67
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crepis sonchifolia (M.Bieb.) C.A.Mey.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 23 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0181116-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7796/indepth.et031.cmd2012.v1
title: Kilite Awlaelo HDSS Core Dataset 2009-2012 Release 2015
DOI: 10.7796/indepth.et051.cmd2012.v1
title: Dabat HDSS Core Dataset 2008-2012 Release 2015
DOI: 10.7796/indepth.in021.cmd2012.v1
title: Vadu INDEPTH Core Dataset 2009-2012 - Release 2015
DOI: 10.7796/indepth.ke011.cmd2012.v1
title: Kilifi HDSS INDEPTH Core Micro Dataset 2002-2012 Release 2015
DOI: 10.7796/indepth.ke031.cmd2012.v1
title: Nairobi INDEPTH Core Dataset 2002-2012 Release 2015
DOI: 10.7796/indepth.mw011.cmd2012.v1
title: Karonga HDSS INDEPTH Core Dataset 2003 - 2012 Release 2015
DOI: 10.7796/indepth.tz012.cmd2012.v1
title: Rufiji HDSS Core Dataset 1998 - 2012 - Release 2015