cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.nkz3t5
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arhopala birmana",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 109 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019590-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17208281
title: LC-HRMS study of Arabidopsis foliar metabolome in response to Gaultheria Essential Oil (GEO)

description: This archive compiles datasets related to studies of Arabidopsis thaliana leaves (Col-0) response to Gaultheria procumbens essential oil (GEO). Ultra-high-performance liquid chromatography-high-resolution MS (UHPLC-HRMS) analyses were performed on a Q Exactive Plus quadrupole (Orbitrap) mass spectrometer, equipped with a heated electrospray probe (HESI II) coupled to a U-HPLC Ultimate 3000 RSLC system (Thermo Fisher Scientific, Hemel Hempstead, United Kigdom). For each biological sample, the RAW file obtained in ESI+ and ESI- mode were retrieved from the Xcalibur version 4.4 software and are deposited in separate sub-folders termed "Pos" and "Neg".  These Pos and Neg folders can be found in a Figure 4 and a Figure 5 folder corresponding to the figures of the André et al. manuscript. In Figure 5 folder T48i stand for 48 hours post-inoculation with Colletotrichum higginsianum. Each folder contains all the data relative to the cohort comprising "Blank" samples, Control treatment with Water (WATER), GEO treatment (GEO) and BION treatment. The details regarding samples preparation, analytic parameters and mass spectrometry, statistical treatment and visualization of the data will be made available in the publication relating to this archive.
DOI: 10.5281/zenodo.17208282
title: LC-HRMS study of Arabidopsis foliar metabolome in response to Gaultheria Essential Oil (GEO)

description: This archive compiles datasets related to studies of Arabidopsis thaliana leaves (Col-0) response to Gaultheria procumbens essential oil (GEO). Ultra-high-performance liquid chromatography-high-resolution MS (UHPLC-HRMS) analyses were performed on a Q Exactive Plus quadrupole (Orbitrap) mass spectrometer, equipped with a heated electrospray probe (HESI II) coupled to a U-HPLC Ultimate 3000 RSLC system (Thermo Fisher Scientific, Hemel Hempstead, United Kigdom). For each biological sample, the RAW file obtained in ESI+ and ESI- mode were retrieved from the Xcalibur version 4.4 software and are deposited in separate sub-folders termed "Pos" and "Neg".  These Pos and Neg folders can be found in a Figure 4 and a Figure 5 folder corresponding to the figures of the André et al. manuscript. In Figure 5 folder T48i stand for 48 hours post-inoculation with Colletotrichum higginsianum. Each folder contains all the data relative to the cohort comprising "Blank" samples, Control treatment with Water (WATER), GEO treatment (GEO) and BION treatment. The details regarding samples preparation, analytic parameters and mass spectrometry, statistical treatment and visualization of the data will be made available in the publication relating to this archive.
DOI: 10.7910/dvn/1ftzqs
title: Replication Data for: Land, Power, and Property Rights: The Political Economy of Land Titling in Sub-Saharan Africa

description: This file contains materials necessary to replicate the figures, tables and supplementary materials of the article.
description: <strong>APSR Data Editors' Note:</strong> APSR Data Editors have reviewed included documentation for completeness and have successfully reproduced all figures and tables in the article using the code and data included in this deposit. Data editors do not review results presented in appendices or supplementary materials.
DOI: 10.15468/dl.x7vsu8
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Delosperma ecklonis latifolia)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019592-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kw2fxq
title: Occurrence Download

description: A dataset containing 26562 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepomis gulosus"
 ]
}

 The dataset includes 26562 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019588-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3cscnq
title: Occurrence Download

description: A dataset containing 39325 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fragaria virginiana",
 "BasisOfRecord is one of (Specimen, Human Observation, Occurrence evidence, Material sample, Living Specimen)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 39325 records from 262 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019589-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13306815
title: Truvari Manuscript VCF files

description: VCF Files with Truvari collapse of variants used as part of https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02840-6
DOI: 10.5281/zenodo.13306816
title: Truvari Manuscript VCF files

description: VCF Files with Truvari collapse of variants used as part of https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02840-6
DOI: 10.15468/dl.xehvk9
title: Occurrence Download

description: A dataset containing 1960 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Laelia albida Bateman ex Lindl., Laelia anceps Lindl., Laelia aurea A.V.Navarro, Laelia autumnalis (Lex.) Lindl., Laelia colombiana J.M.H.Shaw, Laelia elata (Schltr.) J.M.H.Shaw, Laelia eyermaniana Rchb.f., Laelia furfuracea Lindl., Laelia gloriosa (Rchb.f.) L.O.Williams, Laelia halbingeriana Salazar & Soto Arenas, Laelia heidii (Carnevali) Van den Berg & M.W.Chase, Laelia lueddemannii (Prill.) L.O.Williams, Laelia lyonsii (Lindl.) L.O.Williams, Laelia marginata (Lindl.) L.O.Williams, Laelia moyobambae (Schltr.) C.Schweinf., Laelia perezgarciae (Archila & Szlach.) Cetzal & Carnevali, Laelia rubescens Lindl., Laelia schultzei (Schltr.) J.M.H.Shaw, Laelia speciosa (Kunth) Schltr., Laelia splendida (Schltr.) L.O.Williams, Laelia superbiens Lindl., Laelia undulata (Lindl.) L.O.Williams, Laelia weberbaueriana (Kraenzl.) C.Schweinf.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1960 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063084-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7437719
title: Size normalizing planktonic Foraminifera abundance in the water column

description: Data and R code for the paper Size normalizing planktonic Foraminifera abundance in the water column (https://doi.org/10.1002/lom3.10637) by Sonia Chaabane, Thibault de Garidel-Thoron, Xavier Giraud, Julie Meilland, Geert-Jan A. Brummer, Lukas Jonkers, P. Graham Mortyn, Mattia Greco, Nicolas Casajus, Olivier Sulpis, Michal Kucera, Azumi Kuroyanagi, Hélène Howa, Gregory Beaugrand, Ralf Schiebel

 

The codes serve to generate a new normalization approach for estimating the abundance of planktonic Foraminifera (ind/m³) within the specified collection size fraction range. Data utilized in this study are sourced from the FORCIS database, containing records collected from the global ocean at various depths spanning the past century. A cumulative distribution across size fractions is identified and modeled using a Michaelis-Menten function. This modeling results in multiplication factors enabling the normalization of one fraction to any other size fraction equal to or larger than 100 µm. The resultant size normalization model is then tested across various depths and compared against a previous size normalization solution.

Scripts written by Sonia Chaabane.

DATA SOURCES



FORCIS database: https://doi.org/10.5281/zenodo.7390791


DATA



data_raw_from_excel.RDS


CODES



Code 1_Prepare the data.R: Reads the data and prepares it for analysis.

Code 2_Data-model_training.R: Analyzes the data and builds the model.

Code 2_MM_confidence interval_all oceans_depths_seasons.R: Analyzes the data and computes confidence intervals across all oceans, depths, and seasons.

Code 3_Validation.R: Compares actual vs. estimated number concentrations.

Code 4_Test with berger scheme.R: Compares actual vs. estimated number concentrations using Berger 1969 correction scheme.

Code 5_Cross validation_Retailleau et al.R: Applies the FORCIS number concentration-size correction scheme on an independent dataset.

Code 6_Retailleau et al. using berger approach.R: Compares actual vs. estimated number concentrations using Berger 1969 correction scheme from an independent dataset.

function.R: Additional functions used in the analysis.
DOI: 10.5281/zenodo.13306900
title: Proof-of-concept for the visualization and processing of NMR data from Zenodo, using NMRium.

description: The long-term storage of data presents a significant challenge, particularly when the data is in a proprietary format or requires specialized software for display and processing. This effectively means that to access data from a repository like Zenodo, one must first download the dataset and then install a specific application before the data can be viewed.

In this proof-of-concept, we have demonstrated a more streamlined approach. We uploaded a native Bruker spectrometer NMR dataset to Zenodo and showed that it's possible to visualize the data with just one click. Moreover, you can also zoom in and examine all the acquisition parameters.

To visualize the data, please click on the following link: https://zenodo.nmrium.org/zenodo/v1/record/13306900

This link will provide direct access to the data, eliminating the need for downloading the dataset or installing any specific applications, thus making the process of data visualization more efficient and user-friendly.
DOI: 10.15468/dl.augbrw
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oides bowringii (Baly) Baly"
 ]
}

 The dataset includes 113 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063086-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26543140
title: <b>Mate attraction explains the emergence of the multilevel society in an African colobus</b>

description: The manuscript is submitted to <i>Proceedings B</i>.
DOI: 10.6084/m9.figshare.26543140.v2
title: <b>Mate attraction explains the emergence of the multilevel society in an African colobus</b>

description: The manuscript is submitted to <i>Proceedings B</i>.
DOI: 10.6084/m9.figshare.26543140.v1
title: <b>Mate attraction explains the emergence of the multilevel society in an African colobus</b>

description: The manuscript is submitted to <i>Proceedings B</i>.
DOI: 10.15468/dl.zw8zpy
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zatypota alborhombarta (Davis, 1895)"
 ]
}

 The dataset includes 152 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063087-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dcvyp9
title: Occurrence Download

description: A dataset containing 423733 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Living Specimen, Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Fossil)",
 "Country is Chile",
 "Geometry POLYGON((-75.94351 -47.3084,-70.99084 -47.3084,-70.99084 -43.74357,-75.94351 -43.74357,-75.94351 -47.3084))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 423733 records from 348 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063076-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3eyy6p
title: Occurrence Download

description: A dataset listing the 3866 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Colección general del plantas vasculares del Herbario JBB"
 ]
}

 The dataset's 3866 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063083-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wgx3sg
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-97.48828 16.1621,-97.48828 16.07337,-97.39557 16.07337,-97.39557 16.1621,-97.48828 16.1621))",
 "Geometry POLYGON((-97.51487 16.20198,-97.51487 16.0655,-97.37244 16.0655,-97.37244 16.20198,-97.51487 16.20198))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 140 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063089-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tu377b
title: Occurrence Download

description: A dataset containing 68506 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Brazil, Colombia, Venezuela (Bolivarian Republic of), Peru, Mexico, Panama, Argentina, Paraguay, Bolivia (Plurinational State of))",
 "OccurrenceStatus is Present",
 "TaxonKey is Amazona aestiva (Linnaeus, 1758)"
 ]
}

 The dataset includes 68506 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063088-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gu2zf3
title: Occurrence Download

description: A dataset listing the 1409 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "Geometry POLYGON((0.61267 42.88222,0.29168 41.37606,0.55271 40.50834,0.90544 40.43779,1.38868 40.92103,2.30226 41.11856,3.25111 41.63355,3.4698 41.81697,3.59678 42.27905,3.55798 42.43425,2.92659 42.51891,0.61267 42.88222))",
 "TaxonKey is one of (Phaeophyceae, Charophyta, Rhodophyta, Chlorophyta)"
 ]
}

 The dataset's 1409 records were derived from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063085-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7m95z7
title: Occurrence Download

description: A dataset containing 197900 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantae",
 "Year 2022-2024"
 ]
}

 The dataset includes 197900 records from 169 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063080-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/5tmq-dj77
title: IIST BCI Dataset-7 for Human Space Missions

description: We developed a unique and valuable dataset specifically for advancing Brain-Computer Interface (BCI) systems by recording brain activity from a dedicated volunteer. The participant was asked to pronounce 100 carefully selected Malayalam words, along with their English translations, which were chosen for their relevance to astronauts during human space missions. The volunteer pronounced these words both vocally and subvocally, each word being repeated 50 times. Non-invasive Electroencephalography (EEG) sensors were employed to capture the brain activity associated with these tasks. This dataset holds significant potential for the future development of BCI applications, especially in enhancing communication for astronauts in space and offering innovative solutions for individuals with speech or motor impairments. By facilitating communication in challenging environments, this dataset could lead to groundbreaking advances in both space exploration and assistive technology.
DOI: 10.15468/dl.c9vvsq
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Oman",
 "TaxonKey is Prosopis juliflora (Sw.) DC."
 ]
}

 The dataset includes 13 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063090-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mqcter
title: Occurrence Download

description: A dataset containing 194 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Leptotes beatricis A.S.Medeiros, Pegoraro & Xim.Bols., Leptotes bicolor Lindl., Leptotes bohnkiana Campacci, Leptotes harryphillipsii Christenson, Leptotes mogyensis Krackow. ex Christenson, Leptotes pauloensis Hoehne, Leptotes pohlitinocoi V.P.Castro & Chiron, Leptotes tenuis Rchb.f., Leptotes unicolor Barb.Rodr., Leptotes vellozicola Van den Berg, E.C.Smidt & Marçal)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 194 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063091-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.esuum6
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is Oman",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Neltuma juliflora (Sw.) Raf.",
 "Year 2003-2024"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063093-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ke4kb8
title: Occurrence Download

description: A dataset containing 273 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((79.89804 25.06497,147.10196 25.06497,147.10196 51.93503,79.89804 51.93503,79.89804 25.06497))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Juniperus przewalskii Kom."
 ]
}

 The dataset includes 273 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063095-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xu8rp5
title: Occurrence Download

description: A dataset containing 35189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "Geometry POLYGON((0.61267 42.88222,0.29168 41.37606,0.55271 40.50834,0.90544 40.43779,1.38868 40.92103,2.30226 41.11856,3.25111 41.63355,3.4698 41.81697,3.59678 42.27905,3.55798 42.43425,2.92659 42.51891,0.61267 42.88222))",
 "TaxonKey is one of (Phaeophyceae, Charophyta, Rhodophyta, Chlorophyta)"
 ]
}

 The dataset includes 35189 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063094-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zxyd7t
title: Occurrence Download

description: A dataset containing 685 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "GadmGid is USA.48_1",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Vaccinium ovalifolium Sm., Vaccinium ovalifolium var. ovalifolium, Vaccinium ovalifolium var. villosum H.Boissieu, Vaccinium ovalifolium var. shikokianum (Nakai) H.Hara, Vaccinium ovalifolium var. alpinum (Tatew.) T.Yamaz., Vaccinium ovalifolium var. sachalinense T.Yamaz., Vaccinium ovalifolium var. coriaceum H.Boissieu, Vaccinium ovalifolium var. membranaceum H.Boissieu, Vaccinium ovalifolium f. villosum (H.Boissieu) T.Shimizu)"
 ]
}

 The dataset includes 685 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063096-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ejb76
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-180 -90, 180 -90, 180 90, -180 90, -180 -90))",
 "Depth is greater than or equal to 0m",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "TaxonKey is Dermochelyidae",
 "CoordinateUncertaintyInMeters is less than 1e+05"
 ]
}

 The dataset includes 125 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063097-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18739/a2w08wj3n
title: Near-Real-Time National Oceanic and Atmospheric Administration/ National Snow and Ice Data Center (NOAA/NSIDC) Climate Data Record of Passive Microwave Sea Ice Concentration, Version 2

description: This data set provides a near-real-time Climate Data Record (CDR) of sea ice concentration from passive microwave data. The Near-real-time NOAA/NSIDC Climate Data Record of Passive Microwave Sea Ice Concentration (NRT CDR) data set is the near-real-time version of the final NOAA/NSIDC Climate Data Record of Passive Microwave Sea Ice Concentration (G02202). The NRT CDR is designed to fill the temporal gap between updates of the final CDR, occurring every three to six months, and to provide the most recent data.
DOI: 10.15468/dl.sxs8h2
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Copestylum liriope (Hull, 1949)"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063098-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.