cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.vgskkg
title: Occurrence Download

description: A dataset containing 60057 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vespa velutina Lepeletier, 1836",
 "Year is greater than or equal to 2021",
 "Year is less than or equal to 2023",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "DistanceFromCentroidInMeters is greater than or equal to 2000"
 ]
}

 The dataset includes 60057 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006930-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ap2h37
title: Occurrence Download

description: A dataset containing 1388 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Aspidosperma subincanum Mart., Aspidosperma subincanum Mart. ex A.DC., Aspidosperma chodatii Hassl. ex Markgr., Aspidosperma chodatii Hassl., Aspidosperma subincanum var. tomentosum Müll.Arg.)"
 ]
}

 The dataset includes 1388 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0176006-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.djgnbh
title: Occurrence Download

description: A dataset containing 40527 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lepidium virginicum L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 40527 records from 760 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006953-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-47873
title: Redemption tidings, vol. 24, nos. 1-26, 2 Jan. - 17 Dec. 1948

description: [description english/roman)] Issued fortnightly (every two weeks). "A full gospel magazine for all believers" -- subtitle. Includes Tidings from our missionaries in each issue (2-16 Jan., 13 Feb. - 23 Apr., 21 May - 17 Dec. 1948) except vol. 24 nos. 3 & 10. Bound with vol. 25.
DOI: 10.5281/zenodo.10835332
title: Pesticide risk during commercial apple pollination is greater for honeybees than other managed and wild bees

description: Data and code relating to the manuscript “Pesticide risk during commercial apple pollination is greater for honeybees than other managed and wild bees”

Files are organized as follows

input - contains the main data files.





all_pesticide2019.csv – contains the pesticide residue data for all samples




LD50.csv – contains pesticide LD50s in PPB




ld50_per_bee.csv – contains pesticide LD50s in ug / honeybee




nesting_type.csv – lists nesting types of the different bee samples




pesticide_type.csv – lists pesticides by their type




short_name.csv – lists short bee names

folder “gis”



hive_distance_matrix.csv – distances from each orchard to other sites

sitelocation.csv – contains coordinates of sites




code - contains the scripts to analyze the input files



pesticide_analysis.R – is the main anaylsis for the paper

unadjusted_pesticide_analysis.R – is a copy of most of the code above but without LD50 weight adjustements


ld50 adjust - contains the inputs and code for the ld50 adjustments I ran



ld50_adjust.R – is the code to calculate our the adjustements

2020_BeeTox_database_acute_contact_publication_final_R1.csv – is the data file taken from pamminger publication
DOI: 10.5281/zenodo.10992334
title: Pesticide risk during commercial apple pollination is greater for honeybees than other managed and wild bees

description: Data and code relating to the manuscript “Pesticide risk during commercial apple pollination is greater for honeybees than other managed and wild bees”

Files are organized as follows

input - contains the main data files.





all_pesticide2019.csv – contains the pesticide residue data for all samples




LD50.csv – contains pesticide LD50s in PPB




ld50_per_bee.csv – contains pesticide LD50s in ug / honeybee




nesting_type.csv – lists nesting types of the different bee samples




pesticide_type.csv – lists pesticides by their type




short_name.csv – lists short bee names

folder “gis”



hive_distance_matrix.csv – distances from each orchard to other sites

sitelocation.csv – contains coordinates of sites




code - contains the scripts to analyze the input files



pesticide_analysis.R – is the main anaylsis for the paper

unadjusted_pesticide_analysis.R – is a copy of most of the code above but without LD50 weight adjustements


ld50 adjust - contains the inputs and code for the ld50 adjustments I ran



ld50_adjust.R – is the code to calculate our the adjustements

2020_BeeTox_database_acute_contact_publication_final_R1.csv – is the data file taken from pamminger publication
DOI: 10.15468/dl.yb6hss
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lachnellula fuscosanguinea (Rehm) Dennis, Lachnellula robusta Baral & Matheis)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 73 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0320367-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pb53pq
title: Occurrence Download

description: A dataset containing 927 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nicotiana rustica L.",
 "HasCoordinate is true",
 "Year is greater than or equal to 1900",
 "BasisOfRecord is one of (Human Observation, Specimen, Unknown evidence)"
 ]
}

 The dataset includes 927 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060167-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fzc89e
title: Occurrence Download

description: A dataset containing 394 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dalbergia afzeliana G.Don"
 ]
}

 The dataset includes 394 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0144328-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00009352
title: Conventional genomic predictive markers to immune checkpoint inhibitors are deteriorated in metastatic clear cell renal cell carcinoma

description: Metastatic clear cell renal cell carcinoma (mRCC) is a rare form of kidney cancer, comprising only 2-3% of all adult cancer cases. In the United States, approximately 76,080 new kidney cancer cases were diagnosed in 2021, with a significant proportion falling under the clear cell renal cell carcinoma subtype. Metastatic means the cancer has spread to other parts of the body, and mRCC is distinguished by its aggressive nature, often affecting individuals in their prime years. Unfortunately, conventional treatment methods such as surgery, radiation, and chemotherapy have had limited success in addressing this formidable disease.

Immune checkpoint inhibitors (ICIs) represent a groundbreaking form of cancer immunotherapy, disrupting communication between immune cells and cancer cells, thereby enabling the immune system to identify and combat cancer more effectively. They primarily target the programmed cell death protein 1 (PD-1), which, when bound to programmed death-ligand 1 (PD-L1) on the surface of cancer cells, suppresses the immune response. By using anti-PD-1 or anti-PD-L1 antibodies, ICIs disrupt this interaction, empowering the immune system to recognize and eliminate cancer cells.

Although ICIs have demonstrated significant success in various cancers, their effectiveness in mRCC remains inconsistent, with response rates ranging from 15-25%. Moreover, compared to other cancers, mRCC has relatively little research on genetic mutations and tumor microenvironment (TME - the environment surrounding the tumor including blood cells, blood vessels, immune cells etc.), and is known to have characteristics that are opposite to those of other cancer types. Therefore, currently conventional ICI response prediction biomarkers (molecules that indicate normal or abnormal process taking place in your body and may be a sign of an underlying condition or disease) do not work in mRCC, and biomarkers reported to be mRCC specific are also unreproducible. This underscores the urgent need for identifying biomarkers that can differentiate responders from non-responders, guiding more personalized and effective treatment strategies for mRCC patients.

Therefore, we sequenced samples from 85 mRCC patients who received ICI and divided them into responders and non-responders. In addition, we collected biomarkers reported as ICI response prediction markers specific to clear cell renal cell carcinoma (ccRCC) and mRCC, including ICI response prediction markers currently commonly used in all cancers, and confirmed their usefulness in our cohort. Furthermore, we discovered markers that could divide responses in our cohort and developed a machine learning ICI response classifier using RNA expression data. Accordingly, we plan to validate the newly discovered markers and classifiers using the CA209-009 and CA209-025 cohorts.
DOI: 10.25549/pcra-c14-41879
title: Redemption tidings, vol. 8, nos. 1-12, Jan.-Dec. 1932

description: [description english/roman)] Issued monthly. "A full gospel magazine for all believers" -- subtitle. Bound with vol. 7 & 9. Includes Missionary supplement to Redemption tidings in each issue (Jan.-Dec. 1932).
DOI: 10.15468/dl.duevkb
title: Occurrence Download

description: A dataset containing 115710 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyanopica cooki Bonaparte, 1850"
 ]
}

 The dataset includes 115710 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0434167-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.esuyhp
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Oedipina collaris (Stejneger, 1907), Oedipoda collaris Scudder, 1872)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060189-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pyknv7
title: Occurrence Download

description: A dataset containing 651 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-98.78 19.131,-97.599 19.131,-97.599 19.756,-98.78 19.756,-98.78 19.131))",
 "TaxonKey is Malpighiales"
 ]
}

 The dataset includes 651 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0190541-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-41855
title: Redemption tidings, vol. 8, nos. 1-12, Jan.-Dec. 1932

description: [description english/roman)] Issued monthly. "A full gospel magazine for all believers" -- subtitle. Bound with vol. 7 & 9. Includes Missionary supplement to Redemption tidings in each issue (Jan.-Dec. 1932).
DOI: 10.15468/dl.25pyuz
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((7.83698 44.01342,8.00825 44.01342,8.00825 44.08190,7.83698 44.08190,7.83698 44.01342))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lepidoptera",
 "Year 1985-2022"
 ]
}

 The dataset includes 71 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0434165-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hjzg29
title: Occurrence Download

description: A dataset containing 127097 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crepis terglouensis (Hacq.) A.Kern., Cruciata laevipes Opiz, Cuscuta epithymum (L.) L., Cuscuta pedicellata Ledeb.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 127097 records from 477 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158513-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ntby7t
title: Occurrence Download

description: A dataset containing 5970 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Giraffa camelopardalis (Linnaeus, 1758)"
 ]
}

 The dataset includes 5970 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0203437-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vkhrw3
title: Occurrence Download

description: A dataset containing 3095 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Bucorvus abyssinicus",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 3095 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063559-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aaixvd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucalyptus trivalvis Blakely",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044906-191105090559680/datasets/export for details.
DOI: 10.25549/pcra-c14-41993
title: Redemption tidings, vol. 8, nos. 1-12, Jan.-Dec. 1932

description: [description english/roman)] Issued monthly. "A full gospel magazine for all believers" -- subtitle. Bound with vol. 7 & 9. Includes Missionary supplement to Redemption tidings in each issue (Jan.-Dec. 1932).
DOI: 10.15468/dl.unb9d2
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thalamita macropus Montgomery, 1931"
 ]
}

 The dataset includes 67 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133553-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10977654
title: Ptychographic lensless coherent endomicroscopy through a flexible fiber bundle Dataset

description: This data repository presents representative data of the data we use in the paper "Ptychographic lensless coherent endomicroscopy through a flexible fiber bundle" on the study of the USAF-1951 resolution target measurements. It includes a raw dataset of 3,000 measurements used for the reconstruction given in Fig. 2e-h.

Directory StructureLED Repository: This repository contains images using an LED to identify the fiber core centers for the sampling of the measurements. 

Core reflection Directory: Features back-reflected core measurements captured when illuminating the laser core by core. This dataset is collected without the USAF target at the distal facet, providing baseline data for the core reflection so that it can be removed from the measurements digitally.

Measurements Directory: Consists of the raw data for the measurements taken with the USAF target placed at a 700-micron distance. This directory is the core of our dataset, offering raw, unprocessed measurements crucial for the analysis presented in our paper.

Contact_LED_transmission: Contains a contact transmission image of the resolution target, captured with the target placed at contact distance and illuminated by an LED from behind. This serves as a reference image for transmission (Fig.2h).Data Usage

For more information, refer to Weinberg, Gil, et al. "Ptychographic lensless coherent endomicroscopy through a flexible fiber bundle." arXiv preprint arXiv:2402.00148 (2024).
DOI: 10.5281/zenodo.10977655
title: Ptychographic lensless coherent endomicroscopy through a flexible fiber bundle Dataset

description: This data repository presents representative data of the data we use in the paper "Ptychographic lensless coherent endomicroscopy through a flexible fiber bundle" on the study of the USAF-1951 resolution target measurements. It includes a raw dataset of 3,000 measurements used for the reconstruction given in Fig. 2e-h.

Directory StructureLED Repository: This repository contains images using an LED to identify the fiber core centers for the sampling of the measurements. 

Core reflection Directory: Features back-reflected core measurements captured when illuminating the laser core by core. This dataset is collected without the USAF target at the distal facet, providing baseline data for the core reflection so that it can be removed from the measurements digitally.

Measurements Directory: Consists of the raw data for the measurements taken with the USAF target placed at a 700-micron distance. This directory is the core of our dataset, offering raw, unprocessed measurements crucial for the analysis presented in our paper.

Contact_LED_transmission: Contains a contact transmission image of the resolution target, captured with the target placed at contact distance and illuminated by an LED from behind. This serves as a reference image for transmission (Fig.2h).Data Usage

For more information, refer to Weinberg, Gil, et al. "Ptychographic lensless coherent endomicroscopy through a flexible fiber bundle." arXiv preprint arXiv:2402.00148 (2024).
DOI: 10.15468/dl.je5m3y
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Oedipina complex (Dunn, 1924))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 41 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060196-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-41897
title: Redemption tidings, vol. 8, nos. 1-12, Jan.-Dec. 1932

description: [description english/roman)] Issued monthly. "A full gospel magazine for all believers" -- subtitle. Bound with vol. 7 & 9. Includes Missionary supplement to Redemption tidings in each issue (Jan.-Dec. 1932).
DOI: 10.15468/dl.savszf
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hesperoptenus blanfordi (Dobson, 1877)"
 ]
}

 The dataset includes 82 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0348889-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3tynn5
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Colostethus agilis Lynch & Ruiz-Carranza, 1985)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 88 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060217-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-41821
title: Redemption tidings, vol. 8, nos. 1-12, Jan.-Dec. 1932

description: [description english/roman)] Issued monthly. "A full gospel magazine for all believers" -- subtitle. Bound with vol. 7 & 9. Includes Missionary supplement to Redemption tidings in each issue (Jan.-Dec. 1932).