cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26026741.v2
title: Datasets of delta-containing GABA<sub>A</sub> receptor knockout in PV interneurons

description: We explored cellular, synaptic, and local-circuit activity in PV interneurons and pyramidal neurons in mouse mPFC after selectively deleting δ subunits in PV interneurons (cKO mice). In current-clamp recordings, cKO PV interneurons exhibited a higher frequency of action potentials and higher input resistance than wild type (WT) PV interneurons. Picrotoxin increased firing and GABA decreased firing in WT PV interneurons but not in cKO PV interneurons. The δ-preferring agonist THIP reduced spontaneous inhibitory postsynaptic currents in WT pyramidal neurons but not in cKO pyramidal neurons. In WT slices, depolarizing the network with 400 nM kainate increased firing of pyramidal neurons but had little effect on PV interneuron firing. By contrast, in cKO slices kainate recruited PV interneurons at the expense of pyramidal neurons. At the population level, kainate induced broadband increases in local field potentials in WT but not cKO slices. These results on cells and the network can be understood through increased excitability of cKO PV interneurons. In summary, our study demonstrates that δ-containing GABA<sub>A</sub> receptors in mPFC PV interneurons play a crucial role in regulating their excitability and the phasic inhibition of pyramidal neurons, elucidating intricate mechanisms governing cortical circuitry.
DOI: 10.25925/20241201
title: Multi-laboratory compilation of atmospheric carbon monoxide data for the period 1989-2023; obspack_co_1_GLOBALVIEWplus_v5.0_2025-01-22

description: A full list of all creators for this product can be found at www.esrl.noaa.gov/gmd/ccgg/obspack/providerlist/obspack_co_1_GLOBALVIEWplus_v4.0_2023-02-13.html.

This product is constructed using the Observation Package (ObsPack) framework [Masarie et al., 2014; www.earth-syst-sci-data.net/6/375/2014/]. The framework is designed to bring together atmospheric greenhouse gas (GHG) observations from a variety of sampling platforms, prepare them with specific applications in mind, and package and distribute them in a self-consistent and well-documented product. ObsPack products are intended to support GHG budget studies and represent a new generation of cooperative value-added GHG data products. This product includes 312 atmospheric carbon dioxide datasets derived from observations made by 38 laboratories. Data for the period 1989-2022 (where available) are included.
DOI: 10.15468/dl.ac9qze
title: Occurrence Download

description: A dataset containing 98347 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-82.95269 27.45034,-82.27774 27.45034,-82.27774 28.11609,-82.95269 28.11609,-82.95269 27.45034))",
 "OccurrenceStatus is Present",
 "TaxonKey is Pelecanus occidentalis Linnaeus, 1766"
 ]
}

 The dataset includes 98347 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000613-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3dhdjy
title: Occurrence Download

description: A dataset containing 748 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caluromys philander (Linnaeus, 1758)"
 ]
}

 The dataset includes 748 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000615-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xmhqfu
title: Occurrence Download

description: A dataset containing 29941 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Onychorhynchus coronatus (Statius Muller, 1776), Onychorhynchus coronatus fraterculus Bangs, 1902)"
 ]
}

 The dataset includes 29941 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000614-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wvkcty
title: Occurrence Download

description: A dataset containing 72348 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((117 38,118 38,118 40,117 40,117 38))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 72348 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014668-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7916/hwps-jn87
title:  GRID3 DJI - Settlement Extents v3.0
DOI: 10.5281/zenodo.14009697
title: Forest fire compounded by fire types and aspects causes no significant impacts on most soil mineral properties of post-fire black pine forests
DOI: 10.5281/zenodo.14009698
title: Forest fire compounded by fire types and aspects causes no significant impacts on most soil mineral properties of post-fire black pine forests
DOI: 10.15468/dl.v99xva
title: Occurrence Download

description: A dataset containing 10801 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solidago rigida L."
 ]
}

 The dataset includes 10801 records from 215 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011291-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2gh459
title: CCDC 2278660: Experimental Crystal Structure Determination

description: Related Article: Yunyan Sun, Ilia Kevlishvili, Tatiana B. Kouznetsova, Zach P. Burke, Stephen L. Craig, Heather J. Kulik, Jeffrey S. Moore|2024|Chem (Cell Press)|10|3055|doi:10.1016/j.chempr.2024.05.012
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gh46b
title: CCDC 2278661: Experimental Crystal Structure Determination

description: Related Article: Yunyan Sun, Ilia Kevlishvili, Tatiana B. Kouznetsova, Zach P. Burke, Stephen L. Craig, Heather J. Kulik, Jeffrey S. Moore|2024|Chem (Cell Press)|10|3055|doi:10.1016/j.chempr.2024.05.012
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gqrzy
title: CCDC 2286001: Experimental Crystal Structure Determination

description: Related Article: Peiren Liu, Fang Fang, Lukman O. Alimi, Basem A. Moosa, Xuanfu Zhu, Xin Liu, Haochen Wang, Niveen M. Khashab|2024|Chem (Cell Press)|10|3184|doi:10.1016/j.chempr.2024.06.016
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gqs33
title: CCDC 2286005: Experimental Crystal Structure Determination

description: Related Article: Peiren Liu, Fang Fang, Lukman O. Alimi, Basem A. Moosa, Xuanfu Zhu, Xin Liu, Haochen Wang, Niveen M. Khashab|2024|Chem (Cell Press)|10|3184|doi:10.1016/j.chempr.2024.06.016
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gqs44
title: CCDC 2286006: Experimental Crystal Structure Determination

description: Related Article: Peiren Liu, Fang Fang, Lukman O. Alimi, Basem A. Moosa, Xuanfu Zhu, Xin Liu, Haochen Wang, Niveen M. Khashab|2024|Chem (Cell Press)|10|3184|doi:10.1016/j.chempr.2024.06.016
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gqs22
title: CCDC 2286004: Experimental Crystal Structure Determination

description: Related Article: Peiren Liu, Fang Fang, Lukman O. Alimi, Basem A. Moosa, Xuanfu Zhu, Xin Liu, Haochen Wang, Niveen M. Khashab|2024|Chem (Cell Press)|10|3184|doi:10.1016/j.chempr.2024.06.016
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k1wfy
title: CCDC 2355300: Experimental Crystal Structure Determination

description: Related Article: Meng-Yuan Xu, Qian Wu, Chen Wang, Yao Sun, Yu-Kang Teng, Rui Zhang, Zhen-Zhong Lu|2024|CrystEngComm|26|5585|doi:10.1039/D4CE00493K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.ejy32k
title: Occurrence Download

description: A dataset containing 1403 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Coleccion de Herpetologia, MZFC-UNAM, Anfibiofauna endémica frente al cambio climático: análisis de sensibilidad e incertidumbre, Computarización de las colecciones de vertebrados terrestres de la Escuela Nacional de Ciencias Biológicas, IPN Fase 4 (Anfibios y reptiles), Sistemática de Bufo occidentalis Camerano 1879 (Anura: Bufonidae) en México, Digitalización y Sistematización de las Colecciones Biológicas Nacionales del Instituto de Biología, UNAM (vertebrados), Anfibios y reptiles de las regiones 30 (Parque Natural Sierra Maderas del Carmen); 31 (Sierra El Burro-Río San Rodrigo); 36 (Sierra La Encantada); y 37 (Sierra El Pino), Coahuila, Anfibios y reptiles de las regiones 30 (Parque Natural Sierra Maderas del Carmen); 31 (Sierra El Burro-Río San Rodrigo); 36 (Sierra La Encantada); y 37 (Sierra El Pino), Coahuila, Biodiversity Research and Teaching Collections - TCWC Vertebrates, Diversidad de grupos selectos de flora (Magnoliopsida: Malvales, Sapindales, Fabales, Laurales, Solanales y Caryophyllales) y fauna (Lepidoptera, Diptera, Odonata, Amphibia, Reptilia, Aves y Mammalia) del APFF Boquerón de Tonalá, Oaxaca, México)",
 "PublishingOrg is one of (ff90b050-c256-11db-b71b-b8a03c50a862, 4f48f140-38a5-11d9-8439-b8a03c50a862, 2b8e48b0-812d-11de-86fe-b8a03c50a862, 4cadac10-3e7b-11d9-8439-b8a03c50a862, 66522820-055c-11d8-b84e-b8a03c50a862, 8edbbde0-055e-11d8-b850-b8a03c50a862, 52c8f620-1816-11da-9544-b8a03c50a862, fd70f580-4ce2-11db-b80e-b8a03c50a862, c361e830-181e-11da-9544-b8a03c50a862)",
 "TaxonKey is Incilius occidentalis (Camerano, 1879)",
 "Year 1970-2024"
 ]
}

 The dataset includes 1403 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011294-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8sbmvv
title: Occurrence Download

description: A dataset containing 19606 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sorghastrum nutans (L.) Nash"
 ]
}

 The dataset includes 19606 records from 304 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011293-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7he3tc
title: Occurrence Download

description: A dataset containing 4719998 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-92.7967 -57.05546,-30.34992 -57.05546,-30.34992 16.90018,-92.7967 16.90018,-92.7967 -57.05546))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Characiformes, Siluriformes, Pleuronectiformes, Gymnotiformes, Clupeiformes, Cyprinodontiformes, Anguilliformes, Osmeriformes, Osteoglossiformes, Cypriniformes, Atheriniformes, Beloniformes, Perciformes, Synbranchiformes, Tetraodontiformes, Petromyzontiformes, Ophidiiformes, Ceratodontiformes, Elopiformes, Syngnathiformes, Mugiliformes, Beryciformes, Salmoniformes, Myliobatiformes, Rajiformes, Scorpaeniformes, Batrachoidiformes)"
 ]
}

 The dataset includes 4719998 records from 1009 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011284-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7916/1r2n-0j10
title:  GRID3 ERI - Settlement Extents v3.0
DOI: 10.15468/dl.g2x73c
title: Occurrence Download

description: A dataset containing 10932 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Harmful Algal Event Database (HAEDAT)"
 ]
}

 The dataset includes 10932 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011295-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9tcu66
title: Occurrence Download

description: A dataset containing 10932 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Harmful Algal Event Database (HAEDAT)"
 ]
}

 The dataset includes 10932 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011296-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7916/2hhy-yd24
title:  GRID3 ETH - Settlement Extents v3.0
DOI: 10.5281/zenodo.13737921
title: Targeting protein-ligand neosurfaces with a generalizable deep learning tool

description: Molecular recognition events between proteins drive biological processes in living systems. However, higher levels of mechanistic regulation have emerged, where protein-protein interactions are conditioned to small molecules. Despite recent advances, computational tools for the design of novel chemically-induced protein interactions have remained a challenging task for the field. Here, we present a computational strategy for the design of proteins that target neosurfaces, i.e. surfaces arising from protein-ligand complexes. To do so, we leveraged a geometric deep learning approach based on learned molecular surface representations and experimentally validated binders against three drug-bound protein complexes: Bcl2:Venetoclax, DB3:Progesterone and PDF1:Actinonin. All binders demonstrated high affinities and accurate specificities assessed by mutational and structural characterization. Remarkably, surface fingerprints previously trained only on proteins can be applied to neosurfaces emerging from small molecules, serving as a powerful demonstration of generalizability that is uncommon in other deep learning approaches. We anticipate that the designed chemically-induced protein interactions hold the potential to expand the sensing repertoire and the assembly of new synthetic pathways in engineered cells for innovative drug-controlled cell-based therapies
description: This dataset contains all data used to generate the figures and supplementary materials of the publication, as well as the relevant plasmid maps.
DOI: 10.5281/zenodo.13737922
title: Targeting protein-ligand neosurfaces with a generalizable deep learning tool

description: Molecular recognition events between proteins drive biological processes in living systems. However, higher levels of mechanistic regulation have emerged, where protein-protein interactions are conditioned to small molecules. Despite recent advances, computational tools for the design of novel chemically-induced protein interactions have remained a challenging task for the field. Here, we present a computational strategy for the design of proteins that target neosurfaces, i.e. surfaces arising from protein-ligand complexes. To do so, we leveraged a geometric deep learning approach based on learned molecular surface representations and experimentally validated binders against three drug-bound protein complexes: Bcl2:Venetoclax, DB3:Progesterone and PDF1:Actinonin. All binders demonstrated high affinities and accurate specificities assessed by mutational and structural characterization. Remarkably, surface fingerprints previously trained only on proteins can be applied to neosurfaces emerging from small molecules, serving as a powerful demonstration of generalizability that is uncommon in other deep learning approaches. We anticipate that the designed chemically-induced protein interactions hold the potential to expand the sensing repertoire and the assembly of new synthetic pathways in engineered cells for innovative drug-controlled cell-based therapies
description: This dataset contains all data used to generate the figures and supplementary materials of the publication, as well as the relevant plasmid maps.
DOI: 10.15468/dl.396x2a
title: Occurrence Download

description: A dataset containing 36310 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "Geometry POLYGON((-104.27346 25.14735,-102.89042 25.14735,-102.89042 25.88926,-104.27346 25.88926,-104.27346 25.14735))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is one of (Durango, Coahuila)",
 "TaxonKey is Aves",
 "Year 2000-2024"
 ]
}

 The dataset includes 36310 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011297-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27156021
title: mgCST-classifier-v2

description: zip file of the mgCST-classifier-v2 (application and script)
DOI: 10.6084/m9.figshare.27156021.v4
title: mgCST-classifier-v2

description: zip file of the mgCST-classifier-v2 (application and script)
DOI: 10.7916/zmc2-r660
title:  GRID3 GAB - Settlement Extents v3.0
DOI: 10.15468/dl.ymasee
title: Occurrence Download

description: A dataset containing 345912 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((34.71905 31.93067, 34.94298 31.93067, 34.94298 32.19768, 34.71905 32.19768, 34.71905 31.93067))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 345912 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011283-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.awryq9
title: Occurrence Download

description: A dataset containing 314771 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Elanus leucurus (Vieillot, 1818))",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1901",
 "Year is less than or equal to 2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 314771 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011290-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.neukt9
title: Occurrence Download

description: A dataset containing 536 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heliconia irrasa R.R.Sm."
 ]
}

 The dataset includes 536 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239596-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.