cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4110593
title: BERTs of a feather do not generalize together: Large variability in generalization across models with similar test set performance

description: This Zenodo repository contains 100 copies of the model BERT fine-tuned on the MNLI dataset, created for the paper "BERTs of a feather do not generalize together: Large variability in generalization across models with similar test set performance." Please see the project GitHub page for more details about using these models and how to cite any such usage: https://github.com/tommccoy1/hans/tree/master/berts_of_a_feather
description: This project is based upon work supported by the National Science Foundation Graduate Research Fellowship Program under Grant No. 1746891 and by a gift to Tal Linzen from Google, and it was conducted using computational resources from the Maryland Advanced Research Computing Center (MARCC). Any opinions, findings, and conclusions or recommendations expressed in this material are those of the authors and do not necessarily reflect the views of the National Science Foundation, Google, or MARCC.
DOI: 10.5281/zenodo.4110592
title: BERTs of a feather do not generalize together: Large variability in generalization across models with similar test set performance

description: This Zenodo repository contains 100 copies of the model BERT fine-tuned on the MNLI dataset, created for the paper "BERTs of a feather do not generalize together: Large variability in generalization across models with similar test set performance." Please see the project GitHub page for more details about using these models and how to cite any such usage: https://github.com/tommccoy1/hans/tree/master/berts_of_a_feather
description: This project is based upon work supported by the National Science Foundation Graduate Research Fellowship Program under Grant No. 1746891 and by a gift to Tal Linzen from Google, and it was conducted using computational resources from the Maryland Advanced Research Computing Center (MARCC). Any opinions, findings, and conclusions or recommendations expressed in this material are those of the authors and do not necessarily reflect the views of the National Science Foundation, Google, or MARCC.
DOI: 10.5517/ccdc.csd.cc23k0l9
title: CCDC 1952770: Experimental Crystal Structure Determination

description: Related Article: Kashif Majeed, Lingna Wang, Bangjie Liu, Zijian Guo, Fengtao Zhou, Qiuyu Zhang|2020|J.Org.Chem.|86|207|doi:10.1021/acs.joc.0c02022
DOI: 10.5517/ccdc.csd.cc2482r8
title: CCDC 1973979: Experimental Crystal Structure Determination

description: Related Article: José Luis Serrano, Luis García, José Pérez, Pedro Lozano, Jevy Correia, Santosh Kori, Anant R. Kapdi, Yogesh S. Sanghvi|2020|Organometallics|39|4479|doi:10.1021/acs.organomet.0c00580
DOI: 10.5517/ccdc.csd.cc2482s9
title: CCDC 1973980: Experimental Crystal Structure Determination

description: Related Article: José Luis Serrano, Luis García, José Pérez, Pedro Lozano, Jevy Correia, Santosh Kori, Anant R. Kapdi, Yogesh S. Sanghvi|2020|Organometallics|39|4479|doi:10.1021/acs.organomet.0c00580
DOI: 10.6084/m9.figshare.13525568
title: BEdeep: an in silico tool for prediction of base editor efficiencies at on- and off-target loci

description: The outcomes dataset of gRNAs for ABE and CBE in HEK293T or HeLa cells.
DOI: 10.6084/m9.figshare.13525568.v1
title: BEdeep: an in silico tool for prediction of base editor efficiencies at on- and off-target loci

description: The outcomes dataset of gRNAs for ABE and CBE in HEK293T cells.
DOI: 10.6084/m9.figshare.13550075.v1
title: Testing

description: Testing
DOI: 10.6084/m9.figshare.13550075
title: Testing

description: Testing
DOI: 10.6084/m9.figshare.13550075.v3
title: Testing

description: Testing
DOI: 10.6084/m9.figshare.13550075.v2
title: Testing

description: Testing
DOI: 10.6084/m9.figshare.13076387.v1
title: deep-sea anemone genome

description: Genome assembly and annotation files of a new deep-sea anemone species (<i>Paraphelliactis</i> sp.) living at a depth of 3,230 m in the Xisha Trough in the South China Sea. Related article "The genome of a new deep-sea anemone species provides insights into deep-sea adaptation" is being reviewed in Jornal Deep-Sea Research Part I: Oceanographic Research Papers.<br>
DOI: 10.15161/oar.it/73395
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.6084/m9.figshare.13550147
title: Zircon LA-ICP-MS U-Pb data.rar

description: Zircon LA-ICP-MS U-Pb data
DOI: 10.6084/m9.figshare.13550147.v1
title: Zircon LA-ICP-MS U-Pb data.rar

description: Zircon LA-ICP-MS U-Pb data
DOI: 10.17632/977ftdk2s5.1
title: Data for: Predictors of Intention to Vaccinate Against SARS-CoV-2: Results of a Nationwide Survey
DOI: 10.25646/7830
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.5281/zenodo.4429628
title: EPB41L3; A Target Enabling Package

description: EPB41L3 is, with moesin (MSN), a member of the FERM family, which is highly expressed in brain as well as in other tissues (kidney, intestine, and testis). Similar to MSN, it binds to the C-terminus of CD44 and transmits signals to the cytoskeleton. EPB41L3 is inversely correlated with markers of Alzheimer’s Disease (AD). We have chosen to pursue the EPB41L3-CD44 interaction as a potential key driver in AD, and as a selectivity target for FERM proteins. This TEP includes expression constructs and methods for purification of the FERM domain from recombinant <em>E. coli</em>; Fluorescence-based assays for binding its ligand; a peptide from the cytoplasmic tail of CD44; crystal structures and a soakable crystallization system; and small molecules identified from a crystal-based fragment screen. We have also expressed several related FERM domains which can be used as a selectivity panel when developing new ligands. In follow-up work, we plan to expand the fragment hits to generate chemical tools for both EPB41L3 and moesin.
description: Future versions of this TEP will contain data on the EPB41L3 TEP.
DOI: 10.5281/zenodo.4429638
title: EPB41L3; A Target Enabling Package

description: EPB41L3 is, with moesin (MSN), a member of the FERM family, which is highly expressed in brain as well as in other tissues (kidney, intestine, and testis). Similar to MSN, it binds to the C-terminus of CD44 and transmits signals to the cytoskeleton. EPB41L3 is inversely correlated with markers of Alzheimer’s Disease (AD). We have chosen to pursue the EPB41L3-CD44 interaction as a potential key driver in AD, and as a selectivity target for FERM proteins. This TEP includes expression constructs and methods for purification of the FERM domain from recombinant <em>E. coli</em>; Fluorescence-based assays for binding its ligand; a peptide from the cytoplasmic tail of CD44; crystal structures and a soakable crystallization system; and small molecules identified from a crystal-based fragment screen. We have also expressed several related FERM domains which can be used as a selectivity panel when developing new ligands. In follow-up work, we plan to expand the fragment hits to generate chemical tools for both EPB41L3 and moesin.
description: This document represents version 1 of the TEP datasheet and includes all updates on the project as of November 2020. For more information about TEPs and the TEP Programme, please visit https://thesgc.org/tep.
DOI: 10.5281/zenodo.4429627
title: EPB41L3; A Target Enabling Package

description: EPB41L3 is, with moesin (MSN), a member of the FERM family, which is highly expressed in brain as well as in other tissues (kidney, intestine, and testis). Similar to MSN, it binds to the C-terminus of CD44 and transmits signals to the cytoskeleton. EPB41L3 is inversely correlated with markers of Alzheimer’s Disease (AD). We have chosen to pursue the EPB41L3-CD44 interaction as a potential key driver in AD, and as a selectivity target for FERM proteins. This TEP includes expression constructs and methods for purification of the FERM domain from recombinant <em>E. coli</em>; Fluorescence-based assays for binding its ligand; a peptide from the cytoplasmic tail of CD44; crystal structures and a soakable crystallization system; and small molecules identified from a crystal-based fragment screen. We have also expressed several related FERM domains which can be used as a selectivity panel when developing new ligands. In follow-up work, we plan to expand the fragment hits to generate chemical tools for both EPB41L3 and moesin.
description: This document represents version 1 of the TEP datasheet and includes all updates on the project as of November 2020. For more information about TEPs and the TEP Programme, please visit https://thesgc.org/tep.
DOI: 10.5281/zenodo.4429652
title: Reduced Temporal Sensitivity in Obesity: Evidence From a Simultaneity Judgement Task

description: Data set associated with the article Tagini et al., R<strong>educed Temporal Sensitivity in Obesity: Evidence From a Simultaneity Judgement Task;</strong> <em>Multisens Res</em>. 2020 Jan 23:1-15. doi: 10.1163/22134808-20201501.
DOI: 10.5281/zenodo.4429651
title: Reduced Temporal Sensitivity in Obesity: Evidence From a Simultaneity Judgement Task

description: Data set associated with the article Tagini et al., R<strong>educed Temporal Sensitivity in Obesity: Evidence From a Simultaneity Judgement Task;</strong> <em>Multisens Res</em>. 2020 Jan 23:1-15. doi: 10.1163/22134808-20201501.
DOI: 10.5281/zenodo.4429654
title: Is bimanual interference affected in the case of a central proprioceptive loss? New insight from a left-brain-damaged single-case study

description: Dataset associated with the following article: Scarpina F, Tagini S, Rabuffetti M, Albani G, Garbarini F, Mauro A. Is bimanual interference affected in the case of a central proprioceptive loss? New insight from a left-brain-damaged single-case study. <em>Neuropsychology. </em>2020 May;34(4):479-492. doi: 10.1037/neu0000624
DOI: 10.5281/zenodo.4429653
title: Is bimanual interference affected in the case of a central proprioceptive loss? New insight from a left-brain-damaged single-case study

description: Dataset associated with the following article: Scarpina F, Tagini S, Rabuffetti M, Albani G, Garbarini F, Mauro A. Is bimanual interference affected in the case of a central proprioceptive loss? New insight from a left-brain-damaged single-case study. <em>Neuropsychology. </em>2020 May;34(4):479-492. doi: 10.1037/neu0000624
DOI: 10.5281/zenodo.4429660
title: Difference Between Young and Old Adults' Performance on the Psychology Experiment Building Language (PEBL) Test Battery: What Is the Role of Familiarity With Technology in Cognitive Performance?

description: Dataset associated with the following article: Scarpina F, D'Agata F, Priano L, Mauro A. Difference Between Young and Old Adults' Performance on the Psychology Experiment Building Language (PEBL) Test Battery: What Is the Role of Familiarity With Technology in Cognitive Performance? <em>Assessment</em>. 2020 May 21:1073191120918010. doi: 10.1177/1073191120918010.
DOI: 10.5281/zenodo.4429659
title: Difference Between Young and Old Adults' Performance on the Psychology Experiment Building Language (PEBL) Test Battery: What Is the Role of Familiarity With Technology in Cognitive Performance?

description: Dataset associated with the following article: Scarpina F, D'Agata F, Priano L, Mauro A. Difference Between Young and Old Adults' Performance on the Psychology Experiment Building Language (PEBL) Test Battery: What Is the Role of Familiarity With Technology in Cognitive Performance? <em>Assessment</em>. 2020 May 21:1073191120918010. doi: 10.1177/1073191120918010.
DOI: 10.5281/zenodo.4429662
title: Implicit facial emotion recognition of fear and anger in obesity

description: Dataset associated with the article: Scarpina F, Varallo G, Castelnuovo G, Capodaglio P, Molinari E, Mauro A. Implicit facial emotion recognition of fear and anger in obesity. <em>Eat Weight Disord</em>. 2020 Sep 18. doi: 10.1007/s40519-020-01010-6. Epub ahead of print. Erratum in: Eat Weight Disord. 2020 Oct 8;:
DOI: 10.5281/zenodo.4429661
title: Implicit facial emotion recognition of fear and anger in obesity

description: Dataset associated with the article: Scarpina F, Varallo G, Castelnuovo G, Capodaglio P, Molinari E, Mauro A. Implicit facial emotion recognition of fear and anger in obesity. <em>Eat Weight Disord</em>. 2020 Sep 18. doi: 10.1007/s40519-020-01010-6. Epub ahead of print. Erratum in: Eat Weight Disord. 2020 Oct 8;:
DOI: 10.5281/zenodo.4429664
title: Italian Normative Data for the Original Version of the Tower of London Test: A Bivariate Analysis on Speed and Accuracy Scores

description: Dataset associated with the following article: Bruni F, Toraldo A, Scarpina F. Italian Normative Data for the Original Version of the Tower of London Test: A Bivariate Analysis on Speed and Accuracy Scores. <em>Assessment.</em> 2020 Sep 29:1073191120961834. doi: 10.1177/1073191120961834
DOI: 10.5281/zenodo.4429663
title: Italian Normative Data for the Original Version of the Tower of London Test: A Bivariate Analysis on Speed and Accuracy Scores

description: Dataset associated with the following article: Bruni F, Toraldo A, Scarpina F. Italian Normative Data for the Original Version of the Tower of London Test: A Bivariate Analysis on Speed and Accuracy Scores. <em>Assessment.</em> 2020 Sep 29:1073191120961834. doi: 10.1177/1073191120961834
DOI: 10.5281/zenodo.4429666
title: Detection and Recognition of Fearful Facial Expressions During the Coronavirus Disease (COVID-19) Pandemic in an Italian Sample: An Online Experiment

description: Dataset associated with the article: Scarpina F. Detection and Recognition of Fearful Facial Expressions During the Coronavirus Disease (COVID-19) Pandemic in an Italian Sample: An Online Experiment. <em>Front Psychol.</em> 2020 Sep 11;11:2252. doi: 10.3389/fpsyg.2020.02252.
DOI: 10.5281/zenodo.4429665
title: Detection and Recognition of Fearful Facial Expressions During the Coronavirus Disease (COVID-19) Pandemic in an Italian Sample: An Online Experiment

description: Dataset associated with the article: Scarpina F. Detection and Recognition of Fearful Facial Expressions During the Coronavirus Disease (COVID-19) Pandemic in an Italian Sample: An Online Experiment. <em>Front Psychol.</em> 2020 Sep 11;11:2252. doi: 10.3389/fpsyg.2020.02252.
DOI: 10.5281/zenodo.4429668
title: Drawing lines and circles in Parkinson's Disease: The lateralized symptoms interfere with the movements of the unaffected hand

description: Dataset associated with the article: Scarpina F, Bruno V, Rabuffetti M, Priano L, Tagini S, Gindri P, Mauro A, Garbarini F. Drawing lines and circles in Parkinson's Disease: The lateralized symptoms interfere with the movements of the unaffected hand. <em>Neuropsychologia.</em> 2020 Dec 10;151:107718. doi: 10.1016/j.neuropsychologia.2020.107718.
DOI: 10.5281/zenodo.4429667
title: Drawing lines and circles in Parkinson's Disease: The lateralized symptoms interfere with the movements of the unaffected hand

description: Dataset associated with the article: Scarpina F, Bruno V, Rabuffetti M, Priano L, Tagini S, Gindri P, Mauro A, Garbarini F. Drawing lines and circles in Parkinson's Disease: The lateralized symptoms interfere with the movements of the unaffected hand. <em>Neuropsychologia.</em> 2020 Dec 10;151:107718. doi: 10.1016/j.neuropsychologia.2020.107718.
DOI: 10.5281/zenodo.4429670
title: EXPRESS: The Self-perceived Body Size in Obesity: Evidence from the Implicit Representation of the Hand.

description: Dataset associated with the article: Tagini S, Scarpina F, Scacchi M, Mauro A, Zampini M. EXPRESS: The Self-perceived Body Size in Obesity: Evidence from the Implicit Representation of the Hand. Q J Exp Psychol (Hove). 2020 Dec 17:1747021820985441. doi: 10.1177/1747021820985441.
DOI: 10.5281/zenodo.4429669
title: EXPRESS: The Self-perceived Body Size in Obesity: Evidence from the Implicit Representation of the Hand.

description: Dataset associated with the article: Tagini S, Scarpina F, Scacchi M, Mauro A, Zampini M. EXPRESS: The Self-perceived Body Size in Obesity: Evidence from the Implicit Representation of the Hand. Q J Exp Psychol (Hove). 2020 Dec 17:1747021820985441. doi: 10.1177/1747021820985441.
DOI: 10.6084/m9.figshare.13550348
title: Methodological details of included studies.csv

description: Methodological details reported in publications of randomised controlled trials included in the study.
DOI: 10.6084/m9.figshare.13550348.v1
title: Methodological details of included studies.csv

description: Methodological details reported in publications of randomised controlled trials included in the study.
DOI: 10.5281/zenodo.4429672
title: sanjanaravindran/TL_Reproduction_SoayEwes: TL Dynamics & Reproduction in Soay ewes

description: This includes the data used for all the analyses and associated metadata in the paper, The association between female reproductive investment and leukocyte telomere length in wild Soay sheep, Ravindran, Froy, Underwood, Dorrens, Seeker, Watt, Wilbourn, Pilkington, Harrington, Pemberton, Nussey (submitted, 2021) Corresponding author: Sanjana Ravindran, email: sanjana.ravindran@ed.ac.uk
DOI: 10.6084/m9.figshare.13550222.v1
title: Supplementary Table 3

description: Supplementary Table 3. List of all miRNAs and other sncRNAs with results from DESeq2 analysis performed in all comparisons in A) stool from Cohort-IT; B) plasma EVs from Cohort-IT.
DOI: 10.6084/m9.figshare.13550219.v1
title: Supplementary Table 5

description: Supplementary Table 5. Differential expression analysis between CRC and polyp samples in comparison with matched normal colonic mucosa for stool DEmiRNAs and DEsncRNAs between CRC and healthy subjects of both Cohort-IT and Cohort-CZ.
DOI: 10.6084/m9.figshare.13550219
title: Supplementary Table 5

description: Supplementary Table 5. Differential expression analysis between CRC and polyp samples in comparison with matched normal colonic mucosa for stool DEmiRNAs and DEsncRNAs between CRC and healthy subjects of both Cohort-IT and Cohort-CZ.
DOI: 10.6084/m9.figshare.13550225.v1
title: Supplementary Table 4

description: Supplementary Table 4. A) List of differentially expressed miRNAs and sncRNAs from DESeq2 analysis performed in stool from Cohort-CZ; B) List of sncRNAs differentially expressed in stool from both Cohort-IT and Cohort-CZ. C) Expression levels of the 19 DEmiRNAs in both cohorts stratified according to clinical data of the study population; D) Analysis of the clinical data between clusters of CRC patients obtained using the stool expression levels of 19 DEmiRNAs in the comparison between CRC and healthy subjects.
DOI: 10.6084/m9.figshare.13550222
title: Supplementary Table 3

description: Supplementary Table 3. List of all miRNAs and other sncRNAs with results from DESeq2 analysis performed in all comparisons in A) stool from Cohort-IT; B) plasma EVs from Cohort-IT.
DOI: 10.6084/m9.figshare.13550225
title: Supplementary Table 4

description: Supplementary Table 4. A) List of differentially expressed miRNAs and sncRNAs from DESeq2 analysis performed in stool from Cohort-CZ; B) List of sncRNAs differentially expressed in stool from both Cohort-IT and Cohort-CZ. C) Expression levels of the 19 DEmiRNAs in both cohorts stratified according to clinical data of the study population; D) Analysis of the clinical data between clusters of CRC patients obtained using the stool expression levels of 19 DEmiRNAs in the comparison between CRC and healthy subjects.
DOI: 10.6084/m9.figshare.13550237.v1
title: Supplementary Table 1

description: Supplementary Table 1. A) The set of mature miRNA annotations from miRBase v22 and from a position-based method as provided by Docker4Seq. The final identifier used in this work is also reported; B) miRNAs characterized by the same mature sequence that were merged into an unique annotation in our miRNA reference; C) The set of sncRNA (other than miRNA) annotations used in this study.
DOI: 10.6084/m9.figshare.13550237
title: Supplementary Table 1

description: Supplementary Table 1. A) The set of mature miRNA annotations from miRBase v22 and from a position-based method as provided by Docker4Seq. The final identifier used in this work is also reported; B) miRNAs characterized by the same mature sequence that were merged into an unique annotation in our miRNA reference; C) The set of sncRNA (other than miRNA) annotations used in this study.
DOI: 10.6084/m9.figshare.13550240
title: Supplementary Table 2

description: Supplementary Table 2. Alignment statistics and information of the stool small RNA-Seq datasets from A) Cohort-IT and B) Cohort-CZ; C) Alignment statistics and information of the small RNA-Seq datasets from plasma EVs from Cohort-IT; D-E) Alignment statistics and information of the small RNA-Seq datasets from tissue samples from Cohort-IT (CRCs and polyps, respectively).
DOI: 10.6084/m9.figshare.13550243
title: Supplementary Table 6

description: Supplementary Table 6. Details on the classification performances obtained by the application of the feature models defined for the CRC versus Healthy and CRC versus Adenoma comparisons. The results of the classification analysis by applying the 11-miRNA CRCprogressive_predictive_model are also reported. The results were reported for analysis including age and gender as additional features of the model.
DOI: 10.6084/m9.figshare.13550243.v1
title: Supplementary Table 6

description: Supplementary Table 6. Details on the classification performances obtained by the application of the feature models defined for the CRC versus Healthy and CRC versus Adenoma comparisons. The results of the classification analysis by applying the 11-miRNA CRCprogressive_predictive_model are also reported. The results were reported for analysis including age and gender as additional features of the model.
DOI: 10.6084/m9.figshare.13550240.v1
title: Supplementary Table 2

description: Supplementary Table 2. Alignment statistics and information of the stool small RNA-Seq datasets from A) Cohort-IT and B) Cohort-CZ; C) Alignment statistics and information of the small RNA-Seq datasets from plasma EVs from Cohort-IT; D-E) Alignment statistics and information of the small RNA-Seq datasets from tissue samples from Cohort-IT (CRCs and polyps, respectively).
DOI: 10.6084/m9.figshare.13076387
title: deep-sea anemone genome

description: Genome assembly and annotation files of a new deep-sea anemone species (<i>Paraphelliactis</i> sp.) living at a depth of 3,230 m in the Xisha Trough in the South China Sea. Related article "The genome of a new deep-sea anemone species provides insights into deep-sea adaptation" is being reviewed in Jornal Deep-Sea Research Part I: Oceanographic Research Papers.<br>