cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21786980
title: Feasibility of machine learning-based modeling and prediction using multiple centers data to assess intrahepatic cholangiocarcinoma outcomes

description: Currently, there are still no definitive consensus in the treatment of intrahepatic cholangiocarcinoma (iCCA). This study aimed to build a clinical decision support tool based on machine learning using the Surveillance, Epidemiology, and End Results (SEER) database and the data from the Fifth Medical Center of the PLA General Hospital in China. 4,398 eligible patients from the SEER database and 504 eligible patients from the hospital data, who presented with histologically proven iCCA, were enrolled for modeling by cross-validation based on machine learning. All the models were trained using the open-source Python library scikit-survival version 0.16.0. Shapley additive explanations method was used to help clinicians better understand the obtained results. Permutation importance was calculated using library ELI5. All involved treatment modalities could contribute to a better prognosis. Three models were derived and tested using different data sources, with concordance indices of 0.67, 0.69, and 0.73, respectively. The prediction results were consistent with those under actual situations involving randomly selected patients. Model 2, trained using the hospital data, was selected to develop an online tool, due to its advantage in predicting short-term prognosis. The prediction model and tool established in this study can be applied to predict the prognosis of iCCA after treatment by inputting the patient’s clinical parameters or TNM stages and treatment options, thus contributing to optimal clinical decisions.KEY MESSAGESA prognostic model related to disease staging and treatment mode was conducted using the method of machine learning, based on the big data of multi centers.The online calculator can predict the short-term survival prognosis of intrahepatic cholangiocarcinoma, thus, help to make the best clinical decision.The online calculator built to calculate the mortality risk and overall survival can be easily obtained and applied. A prognostic model related to disease staging and treatment mode was conducted using the method of machine learning, based on the big data of multi centers. The online calculator can predict the short-term survival prognosis of intrahepatic cholangiocarcinoma, thus, help to make the best clinical decision. The online calculator built to calculate the mortality risk and overall survival can be easily obtained and applied.
DOI: 10.6084/m9.figshare.21786980.v1
title: Feasibility of machine learning-based modeling and prediction using multiple centers data to assess intrahepatic cholangiocarcinoma outcomes

description: Currently, there are still no definitive consensus in the treatment of intrahepatic cholangiocarcinoma (iCCA). This study aimed to build a clinical decision support tool based on machine learning using the Surveillance, Epidemiology, and End Results (SEER) database and the data from the Fifth Medical Center of the PLA General Hospital in China. 4,398 eligible patients from the SEER database and 504 eligible patients from the hospital data, who presented with histologically proven iCCA, were enrolled for modeling by cross-validation based on machine learning. All the models were trained using the open-source Python library scikit-survival version 0.16.0. Shapley additive explanations method was used to help clinicians better understand the obtained results. Permutation importance was calculated using library ELI5. All involved treatment modalities could contribute to a better prognosis. Three models were derived and tested using different data sources, with concordance indices of 0.67, 0.69, and 0.73, respectively. The prediction results were consistent with those under actual situations involving randomly selected patients. Model 2, trained using the hospital data, was selected to develop an online tool, due to its advantage in predicting short-term prognosis. The prediction model and tool established in this study can be applied to predict the prognosis of iCCA after treatment by inputting the patient’s clinical parameters or TNM stages and treatment options, thus contributing to optimal clinical decisions.KEY MESSAGESA prognostic model related to disease staging and treatment mode was conducted using the method of machine learning, based on the big data of multi centers.The online calculator can predict the short-term survival prognosis of intrahepatic cholangiocarcinoma, thus, help to make the best clinical decision.The online calculator built to calculate the mortality risk and overall survival can be easily obtained and applied. A prognostic model related to disease staging and treatment mode was conducted using the method of machine learning, based on the big data of multi centers. The online calculator can predict the short-term survival prognosis of intrahepatic cholangiocarcinoma, thus, help to make the best clinical decision. The online calculator built to calculate the mortality risk and overall survival can be easily obtained and applied.
DOI: 10.25549/pcra-c14-70946
title: Redemption tidings, vol. 50, nos. 1-52, 3 Jan. - 26 Dec. 1974

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.bpqh2t
title: Occurrence Download

description: A dataset containing 25884 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microhyla Tschudi, 1838"
 ]
}

 The dataset includes 25884 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075717-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k3gp2r
title: Occurrence Download

description: A dataset containing 218 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gloydius brevicauda (Stejneger, 1907))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 218 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042417-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s2r35c
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crepis caucasica C.A.Mey.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 33 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0099895-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-71145
title: Redemption tidings, vol. 50, nos. 1-52, 3 Jan. - 26 Dec. 1974

description: [description english/roman)] Issued weekly.
DOI: 10.25549/pcra-c14-69747
title: Redemption tidings, vol. 49, nos. 1-52, 4 Jan. - 27 Dec. 1973

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.9stbg3
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Serjania inscripta Radlk."
 ]
}

 The dataset includes 74 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0125841-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tgdjcm
title: Occurrence Download

description: A dataset containing 9101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Opuntia ficus-indica (L.) Mill."
 ]
}

 The dataset includes 9101 records from 248 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068409-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wuzz6m
title: Occurrence Download

description: A dataset containing 20078 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cruciata glabra (L.) Opiz",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20078 records from 209 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0099926-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-69713
title: Redemption tidings, vol. 49, nos. 1-52, 4 Jan. - 27 Dec. 1973

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.g3pk6p
title: Occurrence Download

description: A dataset containing 59419 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Herpetotheres cachinnans (Linnaeus, 1758)"
 ]
}

 The dataset includes 59419 records from 175 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055631-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7mjrzp
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tenaturris inepta (E.A.Smith, 1882)"
 ]
}

 The dataset includes 102 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0099965-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zt4unj
title: Occurrence Download

description: A dataset containing 2157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Uma exsul Schmidt & Bogert, 1947)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2157 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042454-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-69305
title: Redemption tidings, vol. 49, nos. 1-52, 4 Jan. - 27 Dec. 1973

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.atkbjq
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "Issue is Coordinate rounded",
 "HasCoordinate is true",
 "TaxonKey is Coryphantha glassii Dicht & A.Lüthy",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062785-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jece9p
title: Occurrence Download

description: A dataset containing 187 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nephrurus amyae Couper, 1994, Nephrurus amyae Couper In Couper & Gregson, 1994)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 187 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042451-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wkc7rj
title: Occurrence Download

description: A dataset containing 170 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tenaturris trilineata (C.B.Adams, 1845)"
 ]
}

 The dataset includes 170 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0099968-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-69411
title: Redemption tidings, vol. 49, nos. 1-52, 4 Jan. - 27 Dec. 1973

description: [description english/roman)] Issued weekly.
DOI: 10.25549/pcra-c14-69405
title: Redemption tidings, vol. 49, nos. 1-52, 4 Jan. - 27 Dec. 1973

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.dhawvb
title: Occurrence Download

description: A dataset containing 3063 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amalosia rhombifer (Gray, 1845))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3063 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042421-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.36s4u7
title: Occurrence Download

description: A dataset containing 880 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Base de datos de la familia Fagaceae en el estado de Hidalgo"
 ]
}

 The dataset includes 880 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031674-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.amyrak
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Spigelia nicotianaeflora"
 ]
}

 The dataset includes 11 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107277-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-70897
title: Redemption tidings, vol. 50, nos. 1-52, 3 Jan. - 26 Dec. 1974

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.7qq5xf
title: Occurrence Download

description: A dataset containing 6864 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lacerta schreiberi Bedriaga, 1878)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6864 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042528-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngdjfr
title: Occurrence Download

description: A dataset containing 3688 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Calochortus Pursh"
 ]
}

 The dataset includes 3688 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184238-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ytag5
title: Occurrence Download

description: A dataset containing 1206 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amphiprion ocellaris Cuvier, 1830"
 ]
}

 The dataset includes 1206 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031666-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-70909
title: Redemption tidings, vol. 50, nos. 1-52, 3 Jan. - 26 Dec. 1974

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.x5a2zw
title: Occurrence Download

description: A dataset containing 180935 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Prunus serotina Ehrh."
 ]
}

 The dataset includes 180935 records from 577 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0099904-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ax9v4v
title: Occurrence Download

description: A dataset containing 6130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aratinga auricapillus (Kuhl, 1820))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 6130 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042529-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive16817.20230509.8.1
title: Moorella thermoacetica (Fontaine et al. 1942) Collins et al. 1994

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive16819.20230509.8.1
title: Moorella thermoacetica (Fontaine et al. 1942) Collins et al. 1994

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.6084/m9.figshare.26334796
title: 8,799 vContigs of TPC

description: 8,799 RNA-dependent RNA polymerase encoding contigs from 79 samples in TP cryosphere
DOI: 10.6084/m9.figshare.26334796.v1
title: 8,799 vContigs of TPC

description: 8,799 RNA-dependent RNA polymerase encoding contigs from 79 samples in TP cryosphere
DOI: 10.15468/dl.ercywc
title: Occurrence Download

description: A dataset containing 166434 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Netta rufina (Pallas, 1773)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2020"
 ]
}

 The dataset includes 166434 records from 561 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021442-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive16820.20230509.8.1
title: Moorella glycerini Slobodkin et al. 1997

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive16821.20230509.8.1
title: Moorella mulderi Balk et al. 2005

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive16822.20230509.8.1
title: Moorella humiferrea Nepomnyashchaya et al. 2012

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive16823.20230509.8.1
title: Thermoanaerobacter kivui (Leigh and Wolfe 1983) Collins et al. 1994

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive16824.20230509.8.1
title: Thermoanaerobacter thermohydrosulfuricus (Klaushofer and Parkkinen 1965) Lee et al. 1993

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive16825.20230509.8.1
title: Thermoanaerobacter thermohydrosulfuricus (Klaushofer and Parkkinen 1965) Lee et al. 1993

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive16826.20230509.8.1
title: Thermoanaerobacter thermohydrosulfuricus (Klaushofer and Parkkinen 1965) Lee et al. 1993

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive16827.20230509.8.1
title: Thermoanaerobacter thermohydrosulfuricus (Klaushofer and Parkkinen 1965) Lee et al. 1993

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive16828.20230509.8.1
title: Thermoanaerobacter thermohydrosulfuricus (Klaushofer and Parkkinen 1965) Lee et al. 1993

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive16829.20230509.8.1
title: Thermoanaerobacter thermohydrosulfuricus (Klaushofer and Parkkinen 1965) Lee et al. 1993

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive16830.20230509.8.1
title: Thermoanaerobacter thermohydrosulfuricus (Klaushofer and Parkkinen 1965) Lee et al. 1993

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive16831.20230509.8.1
title: Thermoanaerobacter thermohydrosulfuricus (Klaushofer and Parkkinen 1965) Lee et al. 1993

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive16832.20230509.8.1
title: Thermoanaerobacter ethanolicus Wiegel and Ljungdahl 1982

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.12811928
title: IODP Expedition 398 Ion chromatography

description: Cation and anion concentration in interstitial water samples was measured by ion chromatography using a conductivity detector. Cation analytes include calcium, magnesium, potassium, and sodium. Anion analytes include chloride, sulfate, and bromide.
DOI: 10.5281/zenodo.12811929
title: IODP Expedition 398 Ion chromatography

description: Cation and anion concentration in interstitial water samples was measured by ion chromatography using a conductivity detector. Cation analytes include calcium, magnesium, potassium, and sodium. Anion analytes include chloride, sulfate, and bromide.
DOI: 10.13145/bacdive16833.20230509.8.1
title: Thermoanaerobacter brockii subsp. finnii (Schmid et al. 1986) Cayol et al. 1995

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.vvq8b4
title: Occurrence Download

description: A dataset containing 1583 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Culex pipiens Linnaeus, 1758"
 ]
}

 The dataset includes 1583 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021457-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.