cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/xymd999hjg.1
title: Data for: Examination and Characterisation of Burst Spinal Cord Stimulation on Cerebrospinal Fluid Cellular and Protein Constituents in Patient Responders with Chronic Neuropathic Pain

description: Introduction: Patients with neuropathic pain have altered proteomic and neuropeptide constituents in cerebrospinal fluid (CSF) compared to controls. Tonic spinal cord stimulation (SCS) has demonstrated differential expression of neuropeptides in CSF before and after treatment suggesting potential mechanisms of action. Burst-SCS is an evidence-based paraesthesia free waveform utilised for neuropathic pain with a potentially different mechanistic action to tonic SCS. This study examines the dynamic biological changes of CSF at a cellular and proteome level after Burst-SCS. Methods: Patients with neuropathic pain selected for SCS had CSF sampled prior to implant of SCS and following 8 weeks of continuous Burst-SCS. Baseline and 8-week pain scores with demographics were recorded. T cell frequencies were analysed by flow cytometry, proteome analysis was performed using mass spectrometry and secreted cytokines, chemokines and neurotrophins were measured by enzyme-linked immunosorbent assay (ELISA). Results: 4 patients (2 females, 2 males) with a mean age of 51 years (+/-SEM 2.74, SD 5.48) achieved a reduction in pain of &gt;50% following 8 weeks of Burst-SCS. Analysis of the CSF proteome indicated a significant alteration in protein expression most related to synapse assembly and immune regulators. There was significantly lower expression of the proteins: growth hormone A1 (PRL), somatostatin (SST), nucleobindin-2 (NUCB2), Calbindin (CALB1), acyl-CoA binding protein (DBI), proSAAS (PCSK1N), endothelin-3 (END3) and cholecystokinin (CCK) after Burst-SCS. The concentrations of secreted chemokines and cytokines and the frequencies of T cells were not significantly changed following Burst-SCS. Conclusion: This study characterised the alteration in the CSF proteome in response to burst SCS in vivo. Functional analysis indicated that the alterations in the CSF proteome is predominately linked to synapse assembly and immune effectors. Individual protein analysis also suggests potential supraspinal mechanisms.
DOI: 10.5061/dryad.26vr077/1
title: Sequencing data

description: Zipped file containing fastq files for each sample. Files were generated using obitools by pairwise aligning raw read1 and read2 files. Each file contains sequencing reads from the 4 primer sets used for each sample.
DOI: 10.5061/dryad.4p6n481/1
title: 1.4_Trinity_assemblies.tar

description: De novo transcriptome assemblies from five species
DOI: 10.5061/dryad.4p6n481/2
title: 1.6_reference_base_coverage.tar

description: The sequencing depth files generated by Samtools. The files were used to calculate the total number of reference bases, the number and proportion of expressed reference bases
DOI: 10.5061/dryad.4p6n481/3
title: 2.2_2.3_getting_Corset_Grouper_cluster_information.tar.gz

description: Files used to generate Corset and Grouper clusters
DOI: 10.5061/dryad.4p6n481/4
title: 3.2_evaluating_clustering.tar

description: Clusters and files used to evaluate quality of clusters
DOI: 10.5061/dryad.4p6n481/5
title: 5_evaluate_dge.tar.gz

description: files that used for evaluating the DGE analyses for wheat. RNA seq data were from Li et al. (2019)
DOI: 10.5061/dryad.4p6n481/6
title: 6_gene_coexpression_WGCNA.tar.gz
DOI: 10.5061/dryad.4p6n481/7
title: Readme
DOI: 10.5061/dryad.cs673qg/1
title: HOSP pairs

description: Data on pairs of house sparrows during control and experimental observations relevant to brood manipulations done when nestlings were 6-8 days old.
DOI: 10.5061/dryad.cs673qg/2
title: Nestling mass

description: Data on nestling mass changes during observations of unmanipulated broods of house sparrows in 2012-2014.
DOI: 10.5061/dryad.cs673qg/3
title: HOSP visits

description: Data on each visit to the nest by parent house sparrows during control and experimental observations when brood size was manipulated.
DOI: 10.5061/dryad.cs673qg/4
title: Electronic supplementary material

description: Contains code used to analyze data as well as results not presented in the published paper.
DOI: 10.5061/dryad.cs673qg/5
title: Metadata for archived files

description: Contains descritpions of variables for the three data files associated with this publication
DOI: 10.5061/dryad.dr2qr81/2
title: Ucrit data juvenile sea bass

description: Ucrit data measured in the European sea bass juvenile reared under a combination of two temperature (15°C and 20°C) and two PCO2 levels (ambient, ~1700µatm)
DOI: 10.5061/dryad.p678q83/1
title: PNTD-D-18-01393-Dataset

description: Dataset for the article named 'Antibodies to Plasmodium vivax Reticulocyte Binding Protein 2b are Associated with Protection against P. vivax Malaria in Populations Living in Low Malaria Transmission Regions of Brazil and Thailand' in Plos NTD.
DOI: 10.17632/337xxbkzwx.1
title: Data for: Land consumption and income in Ecuador: A case of an inverted Environmental Kutznets Curve

description: Data on building permits over population, per capita GVA, population density and share of market sector
DOI: 10.17632/dtw8v5ym2b.1
title: Data for: Temperature and clone-dependent effects of nanoplastics on immunity and life history in Daphnia magna

description: NPLaldata file: life history + hemocyte count data for Daphnia magna individuals, exposed or non-exposed to micro/nanoplastics at 2 temperatures uptake file: florescence values measured by confocal microscopy for Daphnia magna exposed to fluorescent micro/nanoplastics
DOI: 10.17632/h9v3s74fnt.3
title: Data for: The effect of successive uniaxial and biaxial cyclic loading on the fracture resistance of limestone samples

description: The purpose of the tests: a comparative assessment of the damage and resistance of limestone to the destructive effect under uniaxial and biaxial cyclic mechanical loads. Test data for two 50x50x25 mm limestone samples under uniaxial and biaxial sequential cyclic compressive loading are presented. The maximum stress in the cycle is 10 MPa. Sample LM1 was tested in series of 20 cycles in one direction. Each series of 20 cycles for the LM2 sample consisted of two subseries of 10 cycles, the second of which was carried out in the direction perpendicular to the direction of the first subseries. Loading was carried out before the destruction of the samples. Data are presented in two folders designated according to samples and test modes LM1 and LM2 respectively. Each of these folders contains subfolders directly with the corresponding data. Each subfolder contains three data files in which the registration results are recorded: - a file with the letters AE with data on the number of pulses of acoustic emission; - a file with the letter P with data on the load on the sample; - a file with the letter T with data on the strain gauge deformations oriented along the direction of the first loading in the series. For visualization and data processing, each folder contains programs written in the Mathcad software, the name of which contains the word Test. The data of sample LM1 are presented as follows. Folder LM1_8 - test data at a voltage of 8 MPa and a number of cycles of 20 (estimated loads). Folder LM1_10_20 - test data at a voltage of 10 MPa with cycle numbers from 1 to 20. Folder LM1_10_40 - test data at a stress of 10 MPa with cycle numbers from 21 to 40; further similarly to the folder LM1_10_122, when the destruction of the sample occurred. The data of LM2 sample are presented for those series when loading was carried out along the orientation direction of the strain gauge glued to the sample. Folder LM2_10_10 - test data at a stress of 10 MPa with load numbers from 1 to 10. Folder LM2_10_30 - test data at a voltage of 10 MPa with load numbers from 21 to 30, etc. to the folder LM2_10_110. It contains data on the subseries of loading when the destruction of the sample occurred. As a result, we obtained graphs of changes in the loads and deformations of the sample over time, as well as graphs of changes in the number of AE pulses up to failure. The study was supported by the Russian Foundation for Basic Research, grant No. 17-05-00570.
DOI: 10.17632/hcyspfgc5v.1
title: Data for: Thermal Buoyancy Effects on the Flow Field and Heat Transfer of a Rotating Cylinder: A Numerical Study

description: This dataset contains a fortran code along with all the required files. this is a flow and heat transfer solver owned by the author.
DOI: 10.17632/prrjvvdyp7.1
title: Data for: A late Holocene subfossil Atlantic white cedar tree-ring chronology from the northeastern United States

description: The northeastern United States subfossil Atlantic white cedar chronology from 411BCE - 1725 CE. Included is the number of trees per year, length of the segment, mean age of the trees, raw ring width, standardized chronology measurement, residuals, and ARSTAN chronology. This chronology was built using three Atlantic white cedar subfossil sites in the northeastern United States, Quamquissett (41.537 N -70.661W), Hundred Acre Cove (41.76 N -71.31 W), and Meadowlands (39.357N -75.34W).
DOI: 10.17632/rzv4vrjcxj.1
title: Data for: Risk condition analysis in soils and vegetation due to water table drawdown induced by tunnel drainage

description: The list of files and folder are introduced and summarized below. The files with extension .h1d can be opened by open-access Hydrus1D software. (1) LiteratureData: The folder includes two excel files that contain literature values of Rooting depths, Evapotranspiration, and Interception. Literature values were collected from similar sites to Mingtang region. Average values from the literature included in the Topsoil model settings. (a) SimilarSitesET_I.xlsx: Studies chosen for interception and evapotranspiration. (b) SimilarSitesRootDepth.xlsx: Studies chosen for average root depth. (2) Functions: They open and read the Nod_Inf.out and T_Level.out files. (a) openNread2.R: R function reads Nod_Inf.out files and transforms them into a data frame. (b) openNreadT.R: R function reads T_Level.out files and transforms them into a data frame. (3) Output_drawdown: Includes numerical model output data for 9 different cases of water table boundary conditions analyzed in Section 5. (a) Simulations for alpha=1, C_1,C_4,C_7 (b) Simulations for alpha=0.2, C_2,C_5,C_8 (c) Simulations for alpha=0.1, C_3,C_6,C_9 (4) Output_weather: Includes numerical model output data for atmospheric boundary condition cases in Section 6. (a) weather.xlsx: Modified meteorological data (b) Budyko_type.R: Script for Figure 7 and Budyko-type analysis (Figure 9). (c) C_1-C_6 are simulations with weather boundary conditions on homogeneous and layered soil profiles. (5) Example: This folder demonstrates the usage of functions to visualize the simulations results. (a) example.R: the Main folder to run the example, can be used to visualize the simulations file in the above folders
DOI: 10.5061/dryad.026np03/1
title: MrBayes analyses

description: Sequence alignments with command blocks for all phylogenetic analyses using MrBayes 3.6.1
DOI: 10.5061/dryad.1bj133v/1
title: Activity data

description: Activity monitor data, in 15-second bins, from shaker manipulation in monkeys. Day = test day (1 or 2), activity = counts from activity monitor, obs = observation (15-second bins), age = age of subject in years, subj_id = subject ID number (Figure 3 of paper)
DOI: 10.5061/dryad.1bj133v/2
title: Veggie data

description: Data on food retrieved from shaker manipulation in monkeys. Day = test day (1 or 2), loss = mass of food lost from shaker during test interval (g), age = age of subject in years, subj_id = subject ID number (Figure 4 of paper)
DOI: 10.5061/dryad.1bj133v/3
title: Shaker data analysis

description: R code for data analyses
DOI: 10.5061/dryad.1bj133v/4
title: Shaker data analysis revised

description: R code for data analyses, revised to include new analyses recommended by reviewer of Stage 2 submission
DOI: 10.5061/dryad.26vr077/2
title: Data

description: ESV occurrence, ESV ID, morphological ID data, and final data used for analysis.
DOI: 10.5061/dryad.70843h1/1
title: Fitness data

description: Fitness data including original competition plate counts for all competitions analysed in this work.
DOI: 10.5061/dryad.8tn1qg5/1
title: Raw data

description: Raw data.
DOI: 10.5061/dryad.v2g567n/1
title: Data from: Demographic plasticity facilitates ecological and economic resilience in a commercially important reef fish

description: This data is associated with the Journal of Animal Ecology publication detailing age-based life-history characteristics of the bluespine unicornfish Naso unicornis across eleven populations spanning the Indo-Pacific. It contains age, sex, body size, and reproductive information for over 2500 specimens from the eleven locations, as well as increment width summaries for over 100 specimens from four locations.
DOI: 10.5441/001/1.cp97k9j1/1
title: Von der Decken's hornbill (Jetz Kenya)

description: Schwartz K, Jarzyna M, Jetz W (2020) Hierarchical multi-grain models improve descriptions of species’ environmental associations, distribution, and abundance. Ecological Applications. doi:10.1002/eap.2117
description: The characterization of species’ environmental niches and spatial distribution predictions based on them are now central to much of ecology and conservation, but implicitly requires decisions about the appropriate spatial scale (i.e. grain) of analysis. Ecological theory and empirical evidence suggest that range‐resident species respond to their environment at two characteristic, hierarchical spatial grains: (i) response grain, the (relatively fine) grain at which an individual uses environmental resources, and (ii) occupancy grain, the (relatively coarse) grain equivalent to a typical home range. We use a multi‐grain (MG) occupancy model, aided by fine‐grain remotely sensed imagery, to simultaneously estimate species‐environment associations at both grains, conduct grain optimization to measure response grain, and apply this analysis framework to an example species: a medium‐sized bird (Tockus deckeni) in a heterogeneous East African landscape. Based on home range analysis of movement data, we calculate an occupancy grain of 1km for T. deckeni. Using a grain optimization procedure across 32 grains from 10m to 500m, we identify 60m as the most strongly supported response grain for a suite of environmental variables, slightly coarser than opportunistic behavioral observations would have suggested. Validation confirms that the accuracy of the optimized MG occupancy model substantially exceeds that of equivalent single‐grain (SG) occupancy models. We further use a simulation approach to assess the potential impacts of accounting for the multi‐scale structure of species’ environmental requirements on estimates of population size. We find that the more strongly supported MG approach consistently predicts a minimum population sizes in the study landscape that is much lower than that provided by the SG model. This suggests that SG approaches commonly used in conservation applications could lead to overly optimistic abundance and population estimates and that the MG approach may be more appropriate for supporting species conservation goals. More generally, we conclude that multi‐grain approaches of the sort presented, and increasingly enabled by growing high‐resolution remotely sensed data, hold great promise for offering a more mechanistic framework for assessing the appropriate grain(s) for population monitoring and management and enable more reliable estimates of abundances and species’ distributions.
DOI: 10.17632/7j8wgfg36p.4
title: Data for: Predictive Factors for the Efficiency of Erb:YAG Laser Treatment in Urinary Incontinence.

description: Erb: YAG laser treatment may be an alternative option for stress urinary incontinence. However, the limits and efficacy of this particular treatment should be evaluated in different study settings further.
DOI: 10.17632/f7zrbgj992.1
title: Data for: Change in the pattern of posttransplantation anemia in kidney receptors. Gender role in recipients and type of donor
DOI: 10.17632/fp46gc7p33.1
title: Data for: Buckling and postbuckling of advanced grid stiffened truncated conical shells with laminated composite skins
DOI: 10.17632/hcyspfgc5v.2
title: Data for: Thermal Buoyancy Effects on the Flow Field and Heat Transfer of a Rotating Cylinder: A Numerical Study

description: This dataset contains a fortran code along with all the required files. this is a flow and heat transfer solver owned by the author.
DOI: 10.17632/hcyspfgc5v.3
title: Data for: Thermal Buoyancy Effects on the Flow Field and Heat Transfer of a Rotating Cylinder: A Numerical Study

description: This dataset contains a fortran code along with all the required files. this is a flow and heat transfer solver owned by the author.
DOI: 10.17632/jhs4ydkyvb.1
title: Data for: Reconstructing South China in the Mesoproterozoic and its role in the Nuna and Rodinia supercontinents

description: Table S1 Zircon U–Pb analytical results for the Mesoproterozoic igneous rocks and sediments in the western Yangtze Block Table S2 Zircon Lu-Hf analytical results for the samples from Kunyang Group of the western Yangtze Block Table S3 Major oxides, trace elemental and Sr-Nd isotopic analytical results the Mesoproterozoic igneous rocks in the western Yangtze Block Table S4 Sources for data compiled in Figure 2a
DOI: 10.17632/wp5gkjbvb9.1
title: Data for: Evaluation of Ride-Sourcing Search Frictions and Driver Productivity: A Spatial Denoising Approach

description: This dataset contains information about ride-sourcing rides from 06-02-2016 through 04-13-2017 provided by Ride Austin through the website https://data.world/ride-austin/ride-austin-june-6-april-13
DOI: 10.17632/xvpfr6w6w6.1
title: Data for: A finite strain Raviart-Thomas tetrahedron

description: These are the source files for the finite-strain Raviart-Thomas element, making use of Mathematica and Acegen.
DOI: 10.5061/dryad.026np03/2
title: Quartet_sampling

description: Phylogenies in newick format with sequence alignments in phylip format and accompanying commands used for analyses.
DOI: 10.5061/dryad.026np03/3
title: *Beast .xml files

description: *Beast v2.5.1 .xml files for three independent runs later combined in final results.
DOI: 10.5061/dryad.026np03/4
title: Migrate-n analyses

description: Parameter files for final Migrate-n v3.6.11 runs. Start parameters are estimated from data or from medians of previous runs. Models are designated as free: all parameters free to vary; StoR: migration from D. recens to D. subquinaria set to zero; RtoS: migration from D. subquinaria to D. recens set to zero; and symmetric: migration rates are constrained to be symmetric. Sequence alignments in modified phylip format are included.
DOI: 10.5061/dryad.026np03/5
title: ABBA BABA tests

description: Sequence alignments by species for nuclear concatenation (except Y-linked loci) and by locus with R script for analysis using evobiR package.
DOI: 10.5061/dryad.1gh5376/1
title: Suppl_movie_1

description: Supplementary Movie 1. External and internal anatomy of the lobopod in E. rowelli.
DOI: 10.5061/dryad.1gh5376/2
title: Suppl_movie_2

description: Supplementary Movie 2. Haemal space inside the lobopod of E. rowelli.
DOI: 10.5061/dryad.1gh5376/3
title: Suppl_movie_3

description: Supplementary Movie 3. Muscles involved in hydrostatic pressure control, stabilisation and claw movements in E. rowelli.
DOI: 10.5061/dryad.1gh5376/4
title: Suppl_movie_4

description: Supplementary Movie 4. Individual muscles composing the lobopod of E. rowelli.
DOI: 10.5061/dryad.1gh5376/5
title: Suppl_movie_5

description: Supplementary Movie 5. High-speed footage of a walking specimen of E. rowelli.
DOI: 10.5061/dryad.3cc2702/1
title: Analyses R code used
DOI: 10.5061/dryad.kg76k5b/1
title: N2 isothermal adsorption-desorption

description: raw data for Figure 3
DOI: 10.5061/dryad.kg76k5b/5
title: GHSV influence of methanation in different reactors

description: raw data for Figure 7 and 8
DOI: 10.5441/001/1.cp97k9j1/2
title: Von der Decken's hornbill (Jetz Kenya)-reference-data

description: Schwartz K, Jarzyna M, Jetz W (2020) Hierarchical multi-grain models improve descriptions of species’ environmental associations, distribution, and abundance. Ecological Applications. doi:10.1002/eap.2117
description: The characterization of species’ environmental niches and spatial distribution predictions based on them are now central to much of ecology and conservation, but implicitly requires decisions about the appropriate spatial scale (i.e. grain) of analysis. Ecological theory and empirical evidence suggest that range‐resident species respond to their environment at two characteristic, hierarchical spatial grains: (i) response grain, the (relatively fine) grain at which an individual uses environmental resources, and (ii) occupancy grain, the (relatively coarse) grain equivalent to a typical home range. We use a multi‐grain (MG) occupancy model, aided by fine‐grain remotely sensed imagery, to simultaneously estimate species‐environment associations at both grains, conduct grain optimization to measure response grain, and apply this analysis framework to an example species: a medium‐sized bird (Tockus deckeni) in a heterogeneous East African landscape. Based on home range analysis of movement data, we calculate an occupancy grain of 1km for T. deckeni. Using a grain optimization procedure across 32 grains from 10m to 500m, we identify 60m as the most strongly supported response grain for a suite of environmental variables, slightly coarser than opportunistic behavioral observations would have suggested. Validation confirms that the accuracy of the optimized MG occupancy model substantially exceeds that of equivalent single‐grain (SG) occupancy models. We further use a simulation approach to assess the potential impacts of accounting for the multi‐scale structure of species’ environmental requirements on estimates of population size. We find that the more strongly supported MG approach consistently predicts a minimum population sizes in the study landscape that is much lower than that provided by the SG model. This suggests that SG approaches commonly used in conservation applications could lead to overly optimistic abundance and population estimates and that the MG approach may be more appropriate for supporting species conservation goals. More generally, we conclude that multi‐grain approaches of the sort presented, and increasingly enabled by growing high‐resolution remotely sensed data, hold great promise for offering a more mechanistic framework for assessing the appropriate grain(s) for population monitoring and management and enable more reliable estimates of abundances and species’ distributions.
DOI: 10.17632/944jpjj3tp.1
title: Data for: 3550630

description: Data analysis
DOI: 10.17632/chvp3gnsfz.1
title: Data for: 3555192

description: Do COVID-19 and crude oil prices drive the US economic policy uncertainty?
DOI: 10.17632/cnzk34w576.1
title: Data for: 3550618

description: NASDAQ Data Sets Yahoo!
DOI: 10.17632/jhs4ydkyvb.2
title: Data for: Reconstructing South China in the Mesoproterozoic and its role in the Nuna and Rodinia supercontinents

description: Table S1 Zircon U–Pb analytical results for the Mesoproterozoic igneous rocks and sediments in the western Yangtze Block Table S2 Zircon Lu-Hf analytical results for the samples from Kunyang Group of the western Yangtze Block Table S3 Major oxides, trace elemental and Sr-Nd isotopic analytical results the Mesoproterozoic igneous rocks in the western Yangtze Block Table S4 Sources for data compiled in Figure 2a
DOI: 10.17632/kdpg8jgpz9.1
title: Data for: Effects of winter chilling and photoperiod on leaf-out and flowering in a subtropical evergreen broadleaved forest in China

description: Title：Effects of winter chilling and photoperiod on leaf-out and flowering in a subtropical evergreen broadleaved forest in China by Zhuqiu Songa,b, Xiqiang Songc, Yuanqi Pand, Kui Daic, Jiajun Shouc, Qin Chenc, Jiaxin Huangc, Xinran Tangc, Zhongliang Huanga, Yanjun Duc,e*