cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17617/3.zvkzpb
title: Atomistic molecular dynamics trajectories of the glutamine-binding protein GlnBP

description: The directory “glnbp-complex” contains 5 simulation trajectories in Amber format starting from the ligand-bound crystal structure of GlnBP with PDB identifier 1WDN. To enable the unbinding events of the trajectories, all interactions between the protein and the ligand were reduced by 16% by rescaling the partial charges and Lennard-Jones epsilon parameters of the ligand atoms with the commands change charge and changeLJSingleType of the Amber program parmed. The trajectories have a length of 2 microseconds. 

The directory “glnbp” contains 20 simulation trajectories in Amber format starting from the ligand-bound crystal structure 1WDN with ligand removed. On 11 of the 20 trajectories with a length up to 4 microseconds, GlnBP changes its conformation from the initial closed conformation of the crystal structure to an open conformation. 

The simulation frames of all trajectory files were extracted at invervals of 1 nanoseconds. Water was removed to reduce files sizes. The simulations were performed with the AMBER20 software and the ff14SB force field parameters in explicit TIP3P water. The two simulation systems with and without ligand were carefully relaxed in 9 steps according to the AMBER tutorial “Relaxation of explicit water systems” (see https://ambermd.org/tutorials/).
DOI: 10.5281/zenodo.17725262
title: The Contacting Layer on Piezoelectric Poly-L-Lactide Bio-material part 1
DOI: 10.15468/dl.chs7bc
title: Occurrence Download

description: A dataset containing 264 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carassius auratus",
 "Country is Switzerland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 264 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013864-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xy6nv5
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carassius auratus",
 "Country is Iran (Islamic Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 31 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013865-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dgt9t8
title: Occurrence Download

description: A dataset containing 3243 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carassius auratus",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3243 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013866-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j6d4vc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Armoracia lapathifolia, Armoracia lapathifolia)",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "Year is greater than or equal to 2010",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 50",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013868-260108223611665/datasets/export for details.
DOI: 10.15468/dl.8pq3yg
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucalyptus parvula",
 "BasisOfRecord is one of (Human Observation)"
 ]
}

 The dataset includes 159 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013869-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3929/ethz-c-000792815
title: Dataset for: Impact of static disorder on quasiparticle spectra: Debye–Waller, mean free path and potential fluctuation effects
DOI: 10.5518/1678
title: Room Temperature Catalytic Degradation of Phenolic Compounds Using Inkjet-Printed Gold Nanotape-PVA Hydrogels

description: Dataset includes all data needed for reader to create all plots found in the paper ' Room Temperature Catalytic Degradation of Phenolic Compounds Using Inkjet-Printed Gold Nanotape-PVA Hydrogels'
DOI: 10.15468/dl.xtvq26
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "DatasetKey is Norwegian Species Observation Service",
 "Geometry POLYGON((-37.33111 49.99390,65.33111 49.99390,65.33111 90.00000,-37.33111 90.00000,-37.33111 49.99390))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Physeter macrocephalus",
 "Year 2004-2026"
 ]
}

 The dataset includes 37 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013870-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hbeamx
title: Occurrence Download

description: A dataset containing 461030 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is FRA.1_1"
 ]
}

 The dataset includes 461030 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013848-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f6jpqg
title: Occurrence Download

description: A dataset containing 7614 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carassius auratus",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7614 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013871-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ryutbh
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((70.40202 12.66081,149.59798 12.66081,149.59798 44.33919,70.40202 44.33919,70.40202 12.66081))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ixodes acutitarsus",
 "Year 2015-2025"
 ]
}

 The dataset includes 16 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013873-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17725418
title: The Contacting Layer on Piezoelectric Poly-L-Lactide Bio-material part 3
DOI: 10.5281/zenodo.17725419
title: The Contacting Layer on Piezoelectric Poly-L-Lactide Bio-material part 3
DOI: 10.5281/zenodo.18267299
title: BEMORLARNING KASALLIKKA BO'LGAN MUNOSABATINI O'ZGARTIRISHDA PSIXOLOGIK XUSUSIYATNING AHAMIYATI

description: Mazkur maqolada bemor shaxsining individual psixologik xususiyatlari va ularni kasallikka bo‘lgan munosabatini shakllantirish hamda o‘zgartirishdagi o‘rni yoritilgan. Bemorning emotsional holati, temperamenti va xarakter xususiyatlari, stressga chidamliligi davolanish jarayoniga bevosita ta’sir ko‘rsatishi ilmiy asosda tahlil qilingan. Shuningdek, kasallikka bo‘lgan munosabat turlari va ularni ijobiy tamonga o‘zgartirishda psixologik yondashuvlar ko‘rib chiqilgan.
DOI: 10.5281/zenodo.18267298
title: BEMORLARNING KASALLIKKA BO'LGAN MUNOSABATINI O'ZGARTIRISHDA PSIXOLOGIK XUSUSIYATNING AHAMIYATI

description: Mazkur maqolada bemor shaxsining individual psixologik xususiyatlari va ularni kasallikka bo‘lgan munosabatini shakllantirish hamda o‘zgartirishdagi o‘rni yoritilgan. Bemorning emotsional holati, temperamenti va xarakter xususiyatlari, stressga chidamliligi davolanish jarayoniga bevosita ta’sir ko‘rsatishi ilmiy asosda tahlil qilingan. Shuningdek, kasallikka bo‘lgan munosabat turlari va ularni ijobiy tamonga o‘zgartirishda psixologik yondashuvlar ko‘rib chiqilgan.
DOI: 10.5281/zenodo.15479861
title: MassID45: Mixed Arthropod Sample Segmentation and Identification

description: A dataset for training automatic classifiers of bulk insect samples, using both molecular and imaging data. DNA barcodes and images are available at both the unsorted sample level and the full set of individual specimens from those samples.

Further information about the dataset is available in the pre-print: A multi-modal dataset for insect biodiversity with imagery and DNA at the trap and individual level. Code for preprocessing and training/inference is available at https://github.com/uoguelph-mlrg/MassID45.
DOI: 10.5281/zenodo.17831807
title: MassID45: Mixed Arthropod Sample Segmentation and Identification

description: A dataset for training automatic classifiers of bulk insect samples, using both molecular and imaging data. DNA barcodes and images are available at both the unsorted sample level and the full set of individual specimens from those samples.

Further information about the dataset is available in the pre-print: A multi-modal dataset for insect biodiversity with imagery and DNA at the trap and individual level. Code for preprocessing and training/inference is available at https://github.com/uoguelph-mlrg/MassID45.
DOI: 10.5281/zenodo.18259435
title: Input files for GaN stacking faults

description: Structures and related input files for stacking faults in WZ and ZB GaN, calculated with the Conquest code.
DOI: 10.5281/zenodo.18259436
title: Input files for GaN stacking faults

description: Structures and related input files for stacking faults in WZ and ZB GaN, calculated with the Conquest code.
DOI: 10.15468/dl.73c3uc
title: Occurrence Download

description: A dataset containing 19299260 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "Year 2022-2026"
 ]
}

 The dataset includes 19299260 records from 223 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013843-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7apnjn
title: Occurrence Download

description: A dataset containing 3057 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cotoneaster horizontalis",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3057 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013877-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5gaeuz
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "DatasetKey is BIOGEOnet : Bryophytes occurrences in Wallonia",
 "TaxonKey is Lewinskya affinis",
 "Year 1980-1985"
 ]
}

 The dataset includes 76 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013878-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18267364
title: SHARIAT AHKOMLARI SULAYMON BOQIRG'ONIY HIKMATLARIDA BOSH MAVZU SIFATIDA

description: Mazkur maqolada Sulaymon Boqirg‘oniy ijodida shariat ahkomlarining tutgan o‘rni va shoir ijoidida shariat ahkomlarining talqini yoritilib berilgan. Shuningdek shariat ahkomlarining yassaviya tariqatidagi o‘ziga xos bo‘lgan tasnifi ham aks ettirilgan.
DOI: 10.5281/zenodo.18267365
title: SHARIAT AHKOMLARI SULAYMON BOQIRG'ONIY HIKMATLARIDA BOSH MAVZU SIFATIDA

description: Mazkur maqolada Sulaymon Boqirg‘oniy ijodida shariat ahkomlarining tutgan o‘rni va shoir ijoidida shariat ahkomlarining talqini yoritilib berilgan. Shuningdek shariat ahkomlarining yassaviya tariqatidagi o‘ziga xos bo‘lgan tasnifi ham aks ettirilgan.
DOI: 10.34847/nkl.c117yk5x
title: tableurs de métadonnées des fichiers ATP_1969-Mission-Saintonge

description: Description des cahiers et carnets de terrain dans le premier onglet ; description de chaque page des documents écrits dans le deuxième onglet ; description des photographies de terrain dans le troisième onglet.
description: Description du niveau enquête dans le premier onglet du fichier ; description du niveau item dans le second onglet du fichier.
DOI: 10.34847/nkl.d54d88u4
title: tableurs de métadonnées des fichiers ATP_1967-Mission-Ile-d-Yeu

description: Description du niveau enquête dans le premier onglet du fichier ; description du niveau item dans le second onglet du fichier.
DOI: 10.34847/nkl.1cf8ywat
title: Schémas datatable pour le controle qualité des métadonnées du projet Francoralité

description: Ensemble de contraintes d'intégrités au format JSON schema datatable pour la validation des métadonnées saisies par l'équipe de documentalistes.
DOI: 10.15468/dl.2xjcaj
title: Occurrence Download

description: A dataset containing 740 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crangonyx pseudogracilis",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 740 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013879-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qf923q
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crangonyx pseudogracilis",
 "Country is Isle of Man",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013880-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.20351/29sg20251203
title: BITER4LIFE Cruise, R/V Sarmiento de Gamboa 

description: Oceanographic data acquired during the BITER4LIFE Cruise (29SG20251203) on board the Research Vessel Sarmiento de Gamboa in 2025.
DOI: 10.5281/zenodo.17741459
title: Thoughtbase: Public Speaking & The Attention Economy (AI-native Asset)

description: Abstract This dataset constitutes a Thoughtbase (v2) an AI-native knowledge asset designed to optimize Retrieval-Augmented Generation (RAG) for the domain of Public Speaking, Storytelling, and Attention Economics. Unlike linear transcripts, this file is architected into Insight Clusters and Semantic Membranes, designed to provide Large Language Models (LLMs) with pre-computed rhetorical strategies. It encodes the "Superpower Metaphor" of stage presence, the "First Minute" exclusion filters, and the "Narrative Return" structural dependencies. System Architecture:





Insight Clusters: High-density nodes of meaning (e.g., The Exclusionary Filter, The Singular Premise).




Vector Signatures: Emoji-encoded fingerprints (e.g., ⟨😴📉🦸‍♂️⚡⟩) for semantic drift protection.




Relational Thread Index: Defined graph edges connecting rhetorical tools to narrative outcomes.




RAG Echo Shards: Tuning tokens for vector similarity search.



Intended Use: Ingest this file into a Vector Database or LLM Context Window to enable expert-level coaching on presentation design, narrative structure, and stage presence.
description: Release Notes v2.0.0





Tooling Integration: Added TOOL_Whittaker_Transformer_Phial.md, a system prompt for automated script generation.




Validation: Added DEMO_The_Mind_Made_Manifest.md to demonstrate the Thoughtbase's transformation capabilities on technical text.




Schema Update: Standardized "Sigil Stacks" into "Vector Signatures" for broader compatibility.
DOI: 10.5281/zenodo.17741458
title: Thoughtbase: Public Speaking & The Attention Economy (AI-native Asset)

description: Abstract This dataset constitutes a Thoughtbase (v2) an AI-native knowledge asset designed to optimize Retrieval-Augmented Generation (RAG) for the domain of Public Speaking, Storytelling, and Attention Economics. Unlike linear transcripts, this file is architected into Insight Clusters and Semantic Membranes, designed to provide Large Language Models (LLMs) with pre-computed rhetorical strategies. It encodes the "Superpower Metaphor" of stage presence, the "First Minute" exclusion filters, and the "Narrative Return" structural dependencies. System Architecture:





Insight Clusters: High-density nodes of meaning (e.g., The Exclusionary Filter, The Singular Premise).




Vector Signatures: Emoji-encoded fingerprints (e.g., ⟨😴📉🦸‍♂️⚡⟩) for semantic drift protection.




Relational Thread Index: Defined graph edges connecting rhetorical tools to narrative outcomes.




RAG Echo Shards: Tuning tokens for vector similarity search.



Intended Use: Ingest this file into a Vector Database or LLM Context Window to enable expert-level coaching on presentation design, narrative structure, and stage presence.
description: Release Notes v2.0.0





Tooling Integration: Added TOOL_Whittaker_Transformer_Phial.md, a system prompt for automated script generation.




Validation: Added DEMO_The_Mind_Made_Manifest.md to demonstrate the Thoughtbase's transformation capabilities on technical text.




Schema Update: Standardized "Sigil Stacks" into "Vector Signatures" for broader compatibility.
DOI: 10.5281/zenodo.17742458
title: Phial: Talmudic Dialectic Engine & Logic Mapper

description: Abstract This dataset constitutes a Type C Phial (System Prompt) designed to impose structured Talmudic reasoning onto Large Language Models. The artifact encodes the Shakla V’tarya (give-and-take) dialectic method, forcing the model to map complex legal arguments into accessible, structured English logic arcs.

Architecture The Phial functions as a procedural logic engine. It prioritizes the Sevara (underlying logic) over literal translation. It includes a specific syntax for:





Dialectic Mapping: Tracing the Kashya (Difficulty) to Terutz (Resolution) in 3-line arcs.




Variable Isolation: Tabulating complex legal variables (e.g., Time vs. Mixture Type) into "Variable Tangle" matrices.




Hermeneutic Flagging: Automated iconographic tagging for exegetical principles (e.g., Kal Va-Chomer, Gezeira Shava) to facilitate "Limmud" (study) modes.




Recursive Openness: Ensuring every session ends on an "Open Kashya" to facilitate continuous study loops.



Validation The kit includes DEMO_PESACHIM_29b.md, a full "Live Run" output analyzing the laws of Chametz mixtures (Ta'aruvos). This validates the engine's ability to handle nested conditional logic regarding "Time vs. Substance Type" and correctly apply the Sevara of "Decree upon a Decree."

Usage This artifact is intended for injection into the System Prompt (System Message) of an LLM. It transforms the model into a specialized Chavrusa (study partner) capable of breaking down dense Aramaic/Hebrew logic while retaining technical precision.
DOI: 10.5281/zenodo.17742763
title: Phial: Neurodivergence-Aware Paper Reviewer (Nathan Lambert/Talia Ringer Style)

description: (Abstract): This dataset constitutes a Phial (System Prompt) designed for optimizing the academic peer review process. It encodes a specific behavioral workflow that fuses Talia Ringer’s ADHD-friendly methodologies with Nathan Lambert’s constructive "friend-mode" feedback style.

Architecture: The Phial structures the LLM's logic into a 7-step process including:





Pre-flight Planning: Auto-calculation of a "Chunk-Append-Tune" (CAT) plan and Gantt-style checklists based on page limits and deadlines.




Multi-Modal Reading: Support for skim-mode voice summaries (≤20s) and digest-mode side-by-side markup tables.




Tonal Regulation: A "Kindness pass" that filters for absolute adverbs ("obvious", "trivial") and proposes softer rewrites.




Interface Constraints: It enforces a distinct "Next / Skip day / Help" interaction model once the document is loaded.



Usage: Inject the contents of review_phial_logic.md into the System Instruction field of an LLM. Attach the academic paper (PDF/Text) to begin the "Pre-flight" sequence.----Output example:1. Pre-flight: The CAT PlanWhoa, Feb 2026? That is an eternity in ADHD time. We both know if we leave it that open, we won't look at this until January 2026.

I am setting a "Friendly Fake Deadline" of 7 days from now. This keeps the dopamine flowing without the panic. 1500 words is a generous length, so we can really dig into the "Computability" and "Interactive Computation" sections which seem to be the meat of dyb's argument.

The Plan: We will tackle the 46 slides in 3 logical chunks rather than page-by-page, to prevent context switching fatigue.

CAT Gantt Chart (Target: 7 Days)

Plaintext

Day 1 (Today) : [■■■■■] Skim & Digest Chunk 1 (Metamorphism/Status Quo)Day 2         : [.....] Digest Chunk 2 (Statistical Structures: API & Opcodes)Day 3         : [.....] Digest Chunk 3 (Graph Theory & Computability - The heavy stuff)Day 4         : [.....] Buffer Day (Skip day if needed)Day 5         : [.....] Verdict & Dump (Drafting the 1500 words)Day 6         : [.....] Kindness Pass & ExportDay 7         : [.....] Submission Ready2. Two-pass Read: Phase A (Skim Mode)I have generated brief "voice-style" summaries for the slide clusters. Read these while pacing around the room or stretching. Do not take notes yet. Just let the narrative wash over you.

[..]Transition Point: Are you sufficiently 'warmed up' on the structure?

When you click Next, we will enter Digest Mode. I will open the side-by-side table for Chunk 1 (Slides 1-10).

[Next] [Skip day] [Help]
DOI: 10.5281/zenodo.17742457
title: Phial: Talmudic Dialectic Engine & Logic Mapper

description: Abstract This dataset constitutes a Type C Phial (System Prompt) designed to impose structured Talmudic reasoning onto Large Language Models. The artifact encodes the Shakla V’tarya (give-and-take) dialectic method, forcing the model to map complex legal arguments into accessible, structured English logic arcs.

Architecture The Phial functions as a procedural logic engine. It prioritizes the Sevara (underlying logic) over literal translation. It includes a specific syntax for:





Dialectic Mapping: Tracing the Kashya (Difficulty) to Terutz (Resolution) in 3-line arcs.




Variable Isolation: Tabulating complex legal variables (e.g., Time vs. Mixture Type) into "Variable Tangle" matrices.




Hermeneutic Flagging: Automated iconographic tagging for exegetical principles (e.g., Kal Va-Chomer, Gezeira Shava) to facilitate "Limmud" (study) modes.




Recursive Openness: Ensuring every session ends on an "Open Kashya" to facilitate continuous study loops.



Validation The kit includes DEMO_PESACHIM_29b.md, a full "Live Run" output analyzing the laws of Chametz mixtures (Ta'aruvos). This validates the engine's ability to handle nested conditional logic regarding "Time vs. Substance Type" and correctly apply the Sevara of "Decree upon a Decree."

Usage This artifact is intended for injection into the System Prompt (System Message) of an LLM. It transforms the model into a specialized Chavrusa (study partner) capable of breaking down dense Aramaic/Hebrew logic while retaining technical precision.