cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6599780.v1
title: Additional file 1: of The patient experience in community mental health services for older people: a concept mapping approach to support the development of a new quality measure

description: Stata Do File. Contains a STATA do file for multidimensional scaling, including the similarity matrix (raw data) used to construct the analysis presented within the manuscript. (TXT 46 kb)
DOI: 10.6084/m9.figshare.6599771
title: Additional file 1: of Association of Chlamydia trachomatis infections with preterm delivery; a systematic review and meta-analysis

description: Summary of the included studies evaluating the prevalence of CT infections with preterm deliveries. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.6599771.v1
title: Additional file 1: of Association of Chlamydia trachomatis infections with preterm delivery; a systematic review and meta-analysis

description: Summary of the included studies evaluating the prevalence of CT infections with preterm deliveries. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.6599768
title: Additional file 1: of Ageing with Chagas disease: an overview of an urban Brazilian cohort in Rio de Janeiro

description: Table S1. Dataset describing the raw data that support the conclusions of this article. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.6599768.v1
title: Additional file 1: of Ageing with Chagas disease: an overview of an urban Brazilian cohort in Rio de Janeiro

description: Table S1. Dataset describing the raw data that support the conclusions of this article. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.6599759
title: AdditionalÂ fileÂ 1:

description: Rugby union video analysis research database. (XLSX 73 kb)
DOI: 10.6084/m9.figshare.6599759.v1
title: AdditionalÂ fileÂ 1:

description: Rugby union video analysis research database. (XLSX 73 kb)
DOI: 10.6084/m9.figshare.6597509
title: バイオサイエンスにおけるID

description: Presentation slides on the identifiers in biosciences at the Japan Open Science Summit (JOSS) 2018.
DOI: 10.6084/m9.figshare.6597509.v1
title: バイオサイエンスにおけるID

description: Presentation slides on the identifiers in biosciences at the Japan Open Science Summit (JOSS) 2018.
DOI: 10.6084/m9.figshare.6592664
title: Theoretical ribosomal protein mass fingerprint of Listeria innocua

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Listeria innocua.<br></i><br>
DOI: 10.6084/m9.figshare.6592664.v1
title: Theoretical ribosomal protein mass fingerprint of Listeria innocua

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Listeria innocua.<br></i><br>
DOI: 10.6084/m9.figshare.6592475
title: Theoretical ribosomal protein mass fingerprint of Klebsiella pneumoniae

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Klebsiella pneumoniae</i>.<br><br>
DOI: 10.6084/m9.figshare.6592469

description: Figure 1<br>
DOI: 10.6084/m9.figshare.6592442
title: Theoretical ribosomal protein mass fingerprint of Klebsiella oxytoca

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Klebsiella oxytoca.</i><br><br>
DOI: 10.6084/m9.figshare.6592442.v1
title: Theoretical ribosomal protein mass fingerprint of Klebsiella oxytoca

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Klebsiella oxytoca.</i><br><br>
DOI: 10.6084/m9.figshare.6591704
title: Facile synthesis and characterization of novel pyrido[3′,2′:4,5]thieno[3,2-<i>d</i>]pyrimidin-4(3<i>H</i>)-one and pyrido[2′,3′:3,4]pyrazolo[1,5-<i>a</i>]pyrimidine incorporating 1,3-diarylpyrazole moiety

description: 4-(3-(4-Hydroxyphenyl)-1-phenyl-1<i>H</i>-pyrazol-4-yl)-6-phenyl-2-thioxo-1,2-di hydro-pyridine-3-carbonitrile (<b>1</b>) reacted with ethyl chloroacetate (<b>2</b>) in ethanolic sodium acetate solution to yield the corresponding ethyl (3-cyanopyridin-2-ylsulphanyl)acetate derivative <b>3</b>. Intramolecular cyclization of compound <b>3</b> was achieved by its heating in DMF containing potassium carbonate to afford the corresponding ethyl 3-aminothieno[2,3-<i>b</i>]pyridine-2-carboxylate derivative <b>4</b> which reacted with hydrazine hydrate in refluxing pyridine to yield the starting material 3-aminothieno[2,3-<i>b</i>]pyridine-2-carbohydrazide derivative <b>7</b>. Compound <b>7</b> reacted with different reagents such as triethylorthoformate, formic acid, acetic acid and acetic anhydride to afford the target molecules pyrido[3′,2′:4,5]thieno[3,2-<i>d</i>]pyrimidin-4(3<i>H</i>)-one derivatives <b>8–10</b>, <b>12</b> and <b>13</b> in good to excellent yields. On the other hand, pyridine-2(1<i>H</i>)-thione derivative <b>1</b> reacted with hydrazine hydrate in refluxing pyridine to give the other starting material 3-amino-1<i>H</i>-pyrazolo[3,4-<i>b</i>]pyridine derivative <b>20</b> which reacted with acetylacetone under reflux to afford the target molecule pyrido[2′,3′:3,4]pyrazolo[1,5-<i>a</i>]-pyrimidine derivative <b>21</b> in a good yield. The structures of target molecules were elucidated using elemental analyses and spectral data.
DOI: 10.6084/m9.figshare.6591704.v2
title: Facile synthesis and characterization of novel pyrido[3′,2′:4,5]thieno[3,2-<i>d</i>]pyrimidin-4(3<i>H</i>)-one and pyrido[2′,3′:3,4]pyrazolo[1,5-<i>a</i>]pyrimidine incorporating 1,3-diarylpyrazole moiety

description: 4-(3-(4-Hydroxyphenyl)-1-phenyl-1<i>H</i>-pyrazol-4-yl)-6-phenyl-2-thioxo-1,2-di hydro-pyridine-3-carbonitrile (<b>1</b>) reacted with ethyl chloroacetate (<b>2</b>) in ethanolic sodium acetate solution to yield the corresponding ethyl (3-cyanopyridin-2-ylsulphanyl)acetate derivative <b>3</b>. Intramolecular cyclization of compound <b>3</b> was achieved by its heating in DMF containing potassium carbonate to afford the corresponding ethyl 3-aminothieno[2,3-<i>b</i>]pyridine-2-carboxylate derivative <b>4</b> which reacted with hydrazine hydrate in refluxing pyridine to yield the starting material 3-aminothieno[2,3-<i>b</i>]pyridine-2-carbohydrazide derivative <b>7</b>. Compound <b>7</b> reacted with different reagents such as triethylorthoformate, formic acid, acetic acid and acetic anhydride to afford the target molecules pyrido[3′,2′:4,5]thieno[3,2-<i>d</i>]pyrimidin-4(3<i>H</i>)-one derivatives <b>8–10</b>, <b>12</b> and <b>13</b> in good to excellent yields. On the other hand, pyridine-2(1<i>H</i>)-thione derivative <b>1</b> reacted with hydrazine hydrate in refluxing pyridine to give the other starting material 3-amino-1<i>H</i>-pyrazolo[3,4-<i>b</i>]pyridine derivative <b>20</b> which reacted with acetylacetone under reflux to afford the target molecule pyrido[2′,3′:3,4]pyrazolo[1,5-<i>a</i>]-pyrimidine derivative <b>21</b> in a good yield. The structures of target molecules were elucidated using elemental analyses and spectral data.
DOI: 10.6084/m9.figshare.6591665
title: On Data Integration Problems With Manifolds

description: This article focuses on data integration problems where the predictor variables for some response variable partition into known subsets. This type of data is often referred to as multi-view data, and each subset of the predictors is called a data view. Accounting for data views can add practical value in terms of both interpretation and predictive performance. Many existing approaches for multi-view data rely on view-agreement principles, strong smoothness assumptions, or regularization penalties. The former approaches can be sensitive to modest noise in the response or predictor variables, while the latter approach is linear and can usually be out-performed. We develop semiparametric data integration methods to span key tradeoffs including the bias-variance tradeoff on prediction error, the possibility that the data may be fully viewed with no appreciable view relationships, and the use of sparse anchor point methods to detect and use manifolds (i.e., possibly nonelliptical structures) within views if they enhance performance. Theoretical results help justify the new technique, and its effectiveness and computational feasibility are demonstrated empirically. This new semiparametric methodology is available for public use through the supplemental R package mvltools. Additional supplementary material for this article is also available online.
DOI: 10.6084/m9.figshare.6591665.v1
title: On Data Integration Problems with Manifolds

description: This paper focuses on data integration problems where the predictor variables for some response variable partition into known subsets. This type of data is often referred to as multi-view data, and each subset of the predictors is called a data view. Accounting for data views can add practical value in terms of both interpretation and predictive performance. Many existing approaches for multi-view data rely on view-agreement principles, strong smoothness assumptions, or regularization penalties. The former approaches can be sensitive to modest noise in the response or predictor variables, while the latter approach is linear and can usually be outperformed. We develop semi-parametric data integration methods to span key tradeoffs including the bias-variance tradeoff on prediction error, the possibility that the data may be fully viewed with no appreciable view relationships, and the use of sparse anchor point methods to detect and use manifolds (i.e., possibly non-elliptical structures) within views if they enhance performance. Theoretical results help justify the new technique, and its effectiveness and computational feasibility are demonstrated empirically. This new semi-parametric methodology is available for public use through the supplemental R package mvltools. Additional supplementary material for this article is also available online.
DOI: 10.6084/m9.figshare.6591665.v3
title: On Data Integration Problems With Manifolds

description: This article focuses on data integration problems where the predictor variables for some response variable partition into known subsets. This type of data is often referred to as multi-view data, and each subset of the predictors is called a data view. Accounting for data views can add practical value in terms of both interpretation and predictive performance. Many existing approaches for multi-view data rely on view-agreement principles, strong smoothness assumptions, or regularization penalties. The former approaches can be sensitive to modest noise in the response or predictor variables, while the latter approach is linear and can usually be out-performed. We develop semiparametric data integration methods to span key tradeoffs including the bias-variance tradeoff on prediction error, the possibility that the data may be fully viewed with no appreciable view relationships, and the use of sparse anchor point methods to detect and use manifolds (i.e., possibly nonelliptical structures) within views if they enhance performance. Theoretical results help justify the new technique, and its effectiveness and computational feasibility are demonstrated empirically. This new semiparametric methodology is available for public use through the supplemental R package mvltools. Additional supplementary material for this article is also available online.
DOI: 10.6084/m9.figshare.6591665.v2
title: On Data Integration Problems With Manifolds

description: This article focuses on data integration problems where the predictor variables for some response variable partition into known subsets. This type of data is often referred to as multi-view data, and each subset of the predictors is called a data view. Accounting for data views can add practical value in terms of both interpretation and predictive performance. Many existing approaches for multi-view data rely on view-agreement principles, strong smoothness assumptions, or regularization penalties. The former approaches can be sensitive to modest noise in the response or predictor variables, while the latter approach is linear and can usually be out-performed. We develop semiparametric data integration methods to span key tradeoffs including the bias-variance tradeoff on prediction error, the possibility that the data may be fully viewed with no appreciable view relationships, and the use of sparse anchor point methods to detect and use manifolds (i.e., possibly nonelliptical structures) within views if they enhance performance. Theoretical results help justify the new technique, and its effectiveness and computational feasibility are demonstrated empirically. This new semiparametric methodology is available for public use through the supplemental R package mvltools. Additional supplementary material for this article is also available online.
DOI: 10.6084/m9.figshare.6591593
title: Ionizing radiation reduces the capacity of activated macrophages to induce T-cell proliferation, but does not trigger dendritic cell-mediated non-targeted effects

description: <b>Purpose:</b> Previous investigations revealed influences of irradiation up to 2Gy on the cytokine secretion profile of inflammatory and peritoneal mouse macrophages (pMФ). This raised the question if those alterations impact on dendritic cells and consecutive T-cell responses. Further, the impact of irradiation directly on pMФ capacity to induce T-cell responses was analyzed. <b>Materials and methods:</b> pMФ were LPS-activated, irradiated and the expression of activation markers was assessed. Treated pMФ were co-incubated with T-cells to investigate proliferation. To verify modulating properties of pMФ supernatants isolated 24 h after irradiation, bone marrow-derived dendritic cells (BMDC) were co-incubated with supernatants and activation markers as well as the BMDC-induced proliferation of T-cells were measured. <b>Results:</b> pMФ showed a highly significantly decreased major histocompatibility complexII (MHCII) expression within a dose range from 0.7–2Gy. Further, the proliferation rate of cluster of differentiation 4<sup>+</sup> (CD4<sup>+</sup>) T-cells was decreased after co-incubation particularly with 2 Gy irradiated pMФ. The co-incubation of BMDC with supernatants of activated, irradiated pMФ significantly reduced the CD40 expression, but did not impact on the BMDC-derived induction of T-cell proliferation. <b>Conclusions:</b> Inflammatory macrophages being exposed to irradiation have the potential to modulate consecutive adaptive immune reactions. But supernatants of irradiated macrophages do not influence the dendritic cells (DC)-mediated induction of T cell proliferation.
DOI: 10.6084/m9.figshare.6591593.v2
title: Ionizing radiation reduces the capacity of activated macrophages to induce T-cell proliferation, but does not trigger dendritic cell-mediated non-targeted effects

description: <b>Purpose:</b> Previous investigations revealed influences of irradiation up to 2Gy on the cytokine secretion profile of inflammatory and peritoneal mouse macrophages (pMФ). This raised the question if those alterations impact on dendritic cells and consecutive T-cell responses. Further, the impact of irradiation directly on pMФ capacity to induce T-cell responses was analyzed. <b>Materials and methods:</b> pMФ were LPS-activated, irradiated and the expression of activation markers was assessed. Treated pMФ were co-incubated with T-cells to investigate proliferation. To verify modulating properties of pMФ supernatants isolated 24 h after irradiation, bone marrow-derived dendritic cells (BMDC) were co-incubated with supernatants and activation markers as well as the BMDC-induced proliferation of T-cells were measured. <b>Results:</b> pMФ showed a highly significantly decreased major histocompatibility complexII (MHCII) expression within a dose range from 0.7–2Gy. Further, the proliferation rate of cluster of differentiation 4<sup>+</sup> (CD4<sup>+</sup>) T-cells was decreased after co-incubation particularly with 2 Gy irradiated pMФ. The co-incubation of BMDC with supernatants of activated, irradiated pMФ significantly reduced the CD40 expression, but did not impact on the BMDC-derived induction of T-cell proliferation. <b>Conclusions:</b> Inflammatory macrophages being exposed to irradiation have the potential to modulate consecutive adaptive immune reactions. But supernatants of irradiated macrophages do not influence the dendritic cells (DC)-mediated induction of T cell proliferation.
DOI: 10.6084/m9.figshare.6591557
title: Four new <i>Licmophora</i> species (Licmophorales), with a review of valve characters and exploration of cingulum characters, including a new septum type

description: <i>Licmophora</i> species are common epiphytes, with new species being discovered in under-sampled areas, and a need for a larger morphological character set for all species. In the rich flora of Guam, there are several distinctive new species, four of which we describe here, with a reconsideration and expansion of their useful taxonomic characters. <i>Licmophora attenuata</i> n. sp. formed large colonies on long mucilage stalks; narrowly cuneate valves, 209–339 µm long, were notable for a large, possibly hollow, spine, and the head-pole rimoportulae set back along the sternum. <i>Licmophora bulbosa</i> n. sp. was solitary or on short, branched mucilage stalks, with broadly cuneate valves, 95–122 µm long, with slightly inflated apices giving it a ‘turkey baster’ shape; valvocopulae bore a novel perforated silica ingrowth along the entire midrib, which we call a Tharngan strip. <i>Licmophora curvata</i> n. sp. attached by mucilage pads, the 87–170 µm long cells were distinctive by their curvature and 21–30 µm broad valves. <i>Licmophora labianatis</i> n. sp. was found in large colonies on long branched stalks, with 311–365 µm long valves that were distinctive for a delicate section mid-way along the valve where vimines were absent. <i>Licmophora</i> cells are heterovalvar and we define the ‘back’ frustule as the one with the basal rimoportula. Frustules are also heteropolar and thus have a left and right side. These terms do not correspond to epivalve/hypovalve and primary/secondary sides of valves and are useful for specifying locations of features. The <i>Licmophora</i> epitheca (i.e., the mature half of the frustule) has a cingulum comprising five copulae (a valvocopula + four pleurae) that differ from each other and between species; we describe their morphology in detail. Copular striae were often denser than valvar striae. Midribs were positioned symmetrically along the midline of the band, or asymmetrically, closer to one margin. Advalvar and abvalvar copular striae consisted of single slits or a series of pores (rimate vs porate) and the type often changed along the band. Midribs on valvocopulae transitioned in distinctive ways from the abvalvar side at the cell apex to the advalvar side. The 2nd and 4th pleurae (closed at the apex of the frustule, like the valvocopula) were sometimes very similar to one another but in other species the 4th pleura was reduced to an apical cap with a very narrow band. The 1st and 3rd pleurae, closed at the base, were usually distinct from one another in the size and shape of the open tips. The expanded set of valve + copula characters will be useful in resolving the taxonomy of the majority of short, straight <i>Licmophora</i> species, but studies of additional species are needed to narrow the list to the most useful copula characters.
DOI: 10.6084/m9.figshare.6591557.v1
title: Four new <i>Licmophora</i> species (Licmophorales), with a review of valve characters and exploration of cingulum characters, including a new septum type

description: <i>Licmophora</i> species are common epiphytes, with new species being discovered in under-sampled areas, and a need for a larger morphological character set for all species. In the rich flora of Guam, there are several distinctive new species, four of which we describe here, with a reconsideration and expansion of their useful taxonomic characters. <i>Licmophora attenuata</i> n. sp. formed large colonies on long mucilage stalks; narrowly cuneate valves, 209–339 µm long, were notable for a large, possibly hollow, spine, and the head-pole rimoportulae set back along the sternum. <i>Licmophora bulbosa</i> n. sp. was solitary or on short, branched mucilage stalks, with broadly cuneate valves, 95–122 µm long, with slightly inflated apices giving it a ‘turkey baster’ shape; valvocopulae bore a novel perforated silica ingrowth along the entire midrib, which we call a Tharngan strip. <i>Licmophora curvata</i> n. sp. attached by mucilage pads, the 87–170 µm long cells were distinctive by their curvature and 21–30 µm broad valves. <i>Licmophora labianatis</i> n. sp. was found in large colonies on long branched stalks, with 311–365 µm long valves that were distinctive for a delicate section mid-way along the valve where vimines were absent. <i>Licmophora</i> cells are heterovalvar and we define the ‘back’ frustule as the one with the basal rimoportula. Frustules are also heteropolar and thus have a left and right side. These terms do not correspond to epivalve/hypovalve and primary/secondary sides of valves and are useful for specifying locations of features. The <i>Licmophora</i> epitheca (i.e., the mature half of the frustule) has a cingulum comprising five copulae (a valvocopula + four pleurae) that differ from each other and between species; we describe their morphology in detail. Copular striae were often denser than valvar striae. Midribs were positioned symmetrically along the midline of the band, or asymmetrically, closer to one margin. Advalvar and abvalvar copular striae consisted of single slits or a series of pores (rimate vs porate) and the type often changed along the band. Midribs on valvocopulae transitioned in distinctive ways from the abvalvar side at the cell apex to the advalvar side. The 2nd and 4th pleurae (closed at the apex of the frustule, like the valvocopula) were sometimes very similar to one another but in other species the 4th pleura was reduced to an apical cap with a very narrow band. The 1st and 3rd pleurae, closed at the base, were usually distinct from one another in the size and shape of the open tips. The expanded set of valve + copula characters will be useful in resolving the taxonomy of the majority of short, straight <i>Licmophora</i> species, but studies of additional species are needed to narrow the list to the most useful copula characters.