cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17863/cam.37924
title: Research data supporting "Top-down solidification of asteroids"

description: Zip folder containing Matlab .mat data files and .m files for use in regenerating the figures present in the associated publication. All data has been generated using standard Matlab solution routines (bvp45 and ode45) using the equations and boundary conditions described within the publication, and are provided here for ease of use. Please see publication for further details.
DOI: 10.17863/cam.96660
title: Velocity and species imaging data for Cambridge Oxycoal Swirl Burner (CCB)

description: This document describes the database of experiments performed using coal and methane combustion in the Cambridge Coal Burner (CCB). Both cases have the same outer geometry, but series CCB2 is outfitted with a central bluff body to enhance flame stabilization and coal burnout.Cases with reacting flows are denoted RF, and non-reacting flow, by NRF. The burner consists of a tube carrying the mixture of coal, methane, oxidizer and diluent (conditions listed below), surrounded by a swirling pilot of methane gas. Measurements were made with: PIV, LDA, Mie scatter and OH PLIF. See original publications for details of the methodology. —— Cite as: Balusamy, S., Schmidt, A. and Hochgreb, S. (2013), “Flow field measurements of pulverized coal combustion using optical diagnostic techniques”, Experiments in Fluids, 54(5):1534, doi:10.1007/s00348-013-1534-2 Balusamy, S., Kamal, M. M., Lowe, S. M., Tian, B. , Gao, Y. and Hochgreb, S. (2015), “Laser diagnostics of pulverized coal combustion in O2/N2 and O2/CO2 conditions: velocity and scalar field measurements”, Experiments in Fluids 56(5):0723-4864. doi:10.1007/s00348-015-1965-z
DOI: 10.15468/dl.6t2c6c
title: Occurrence Download

description: A dataset containing 362347 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Japan",
 "DatasetKey is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 362347 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037894-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3638411_d1.v1
title: Additional file 2: of General continuous-time Markov model of sequence evolution via insertions/deletions: local alignment probability computation

description: A package (the version used for the analyses in this paper), which contains Perl modules that implement the key algorithms and formulas, as well as some main Perl scripts that we used for the actual data analyses. (The package is available under the GNU General Public License. The modules and scripts will run on a Mac OS X terminal, and were confirmed to run also on Red Had Enterprise Linux (6.4). And they will probably run on other UNIX platforms as well, although we have not tested whether they indeed do.) The package also contains Dawg control files necessary for creating the simulated MSA sets 1A, 1B, 2, 3P, 3M and 3F. The latest version of the package (“FA_LOLIPOG_P.verxxx”) will be available from the “LOLIPOG” (LOg-LIkelihood for the Pattern Of Gaps) project at the FTP repository of the Bioinformatics Organization [58]. (ZIP 7548 kb)
DOI: 10.17863/cam.23376
title: Data supporting the publication "Advances in the synthesis and long-term protection of zero-valent iron nanoparticles" in Part. Part. Systm. Char. by Mehta et al.

description: Data supporting the publication "Advances in the synthesis and long-term protection of zero-valent iron nanoparticles" in Part. Part. Systm. Char. by Mehta et al. Data include brightfield transmission electron microscope (TEM), powder X-ray diffraction and scanning TEM-high-angle annular darkfield analysis.
DOI: 10.6084/m9.figshare.c.3638456_d1.v1
title: Additional file 2: Table S1. of Chromatin-wide and transcriptome profiling integration uncovers p38α MAPK as a global regulator of skeletal muscle differentiation

description: List of genes regulated and bound by p38α. (XLSX 686 kb)
DOI: 10.6084/m9.figshare.c.3638456_d2.v1
title: Additional file 1: Table S2. of Chromatin-wide and transcriptome profiling integration uncovers p38α MAPK as a global regulator of skeletal muscle differentiation

description: List of primers used in the study. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3638462_d2.v1
title: Additional file 1: Supplementary Tables S1-S6. of Rapid evolution of chemosensory receptor genes in a pair of sibling species of orchid bees (Apidae: Euglossini)

description: (XLSX 3214 kb)
DOI: 10.5281/zenodo.14509937
title: Fitted BRAID and Hill functions, and cross-validation splits, for scaled-up comboKR in "Scaling up drug combination surface prediction"

description: The zipped files contain the fitted BRAID and Hill functions (fitted with Synergy package), as well as the cross-validation splits for the experiments, associated with "Scaling up drug combination surface prediction" by Huusari et al. 

All of the folders contain a separate README file, that explains the file types and contents. 

The original datasets are available as follows:



Jaaks

NCI-ALMANAC

O'Neil
DOI: 10.5281/zenodo.14509938
title: Fitted BRAID and Hill functions, and cross-validation splits, for scaled-up comboKR in "Scaling up drug combination surface prediction"

description: The zipped files contain the fitted BRAID and Hill functions (fitted with Synergy package), as well as the cross-validation splits for the experiments, associated with "Scaling up drug combination surface prediction" by Huusari et al. 

All of the folders contain a separate README file, that explains the file types and contents. 

The original datasets are available as follows:



Jaaks

NCI-ALMANAC

O'Neil
DOI: 10.6084/m9.figshare.c.3638531_d4.v1
title: Additional file 14: Table S6 of The genomic architecture of resistance to Campylobacter jejuni intestinal colonisation in chickens

description: List of SNP markers used in the back-cross analysis. (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.c.3638531_d7.v1
title: Additional file 10: Table S4 of The genomic architecture of resistance to Campylobacter jejuni intestinal colonisation in chickens

description: Genes located in the QTL candidate regions for Campylobacter resistance containing splicing, 5â ˛UTR, both missense and UTR, CpG sites SNVs. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3638531_d6.v1
title: Additional file 13: Table S5 of The genomic architecture of resistance to Campylobacter jejuni intestinal colonisation in chickens

description: List of selected candidate genes for Campylobacter colonisation resistance detected with the back-cross and AIL experiment. Expression of the candidate genes for Campylobacter resistance identified in the present study using data from previously published studies of other poultry infections. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3638531_d8.v1
title: Additional file 1: Table S1 of The genomic architecture of resistance to Campylobacter jejuni intestinal colonisation in chickens

description: Levels of C. jejuni colonisation in the caeca of line 61, line N, back-cross and advanced intercross line birds. The measurements took place one, two, three, four and five days after challenge at 3 weeks of age. Data are presented as mean log10 (CFU/g) ± standard deviation of the mean. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3638531_d12.v1
title: Additional file 4: Table S2 of The genomic architecture of resistance to Campylobacter jejuni intestinal colonisation in chickens

description: Genes located in the QTL candidate regions for Campylobacter colonisation resistance. (XLSX 27Â kb)
DOI: 10.17863/cam.59871
title: Research data supporting "The release of toxic oligomers from α-synuclein fibrils induces neuronal dysfunction"

description: NMR spectra supporting "The release of toxic oligomers from α-synuclein fibrils induces neuronal dysfunction". To probe the structural properties of aS oligomers and fibrils, we used solid-state nuclear magnetic resonance (ssNMR) spectroscopy. Correlations between carbon atoms of residues located in rigid regions of the oligomers/fibrils were detected using 13C–13C dipolar-assisted rotational resonance (DARR) correlation spectra, measured using magic angle spinning (MAS). Data collection methods: Paramagnetic relaxation enhancement (PRE) measurements. PRE data were acquired using ssNMR employing DARR experiments to probe the membrane interactions of the rigid regions of the αS oligomers and fibrils. PRE between the oligomers/fibrils and the surfaces of the membranes were measured by incorporating into the lipid membrane 2% of 1,2-dimyristoyl-sn-glycero-3-phosphoethanolamine-N-DTPA gadolinium salt, which carries an unpaired electron on the hydrophilic head group, in the mixture of 5:3:2 of DOPE:DOPS:DOPC (Avanti Polar Lipids Inc., Alabaster, AL, USA) prepared in chloroform solutions.These small quantities of lipid molecules labeled with a paramagnetic centre (PC) induces relaxation in the nucleus of nearby atoms. PRE experiments probing the insertion of the oligomers/fibrils into the interior of the membrane were carried out using as a paramagnetic lipid with an unpaired electron located at the carbon 16 of the lipid tail (1-palmitoyl-2-stearoyl-[16-doxyl]-sn-glycero-3- phosphocholine).
DOI: 10.6084/m9.figshare.c.3638531_d13.v1
title: Additional file 9: Table S3 of The genomic architecture of resistance to Campylobacter jejuni intestinal colonisation in chickens

description: List of single nucleotide variants located in the candidate regions for Campylobacter colonisation resistance. Variant Effect Predictor annotation results, SIFT predictions and allelic frequencies per each parental line are also presented. (XLSX 1242Â kb)
DOI: 10.17863/cam.7719
title: Research data supporting "Surface residual stresses in multipass welds produced using low transformation temperature filler alloys"

description: Tensile residual stresses at the surface of welded components are known to compromise fatigue resistance through the accelerated initiation of microcracks, especially at the weld toe. Inducement of compression in these regions is a common technique employed to enhance fatigue performance. Transformation plasticity has been established as a viable method to generate such compressive residual stresses in steel welds and exploits the phase transformation in welding filler alloys, that transform at low temperature to compensate for accumulated thermal contraction strains. Neutron and X-ray diffraction have been used to determine the stress profiles that exist across the surface of plates welded with low transformation temperature welding alloys, with a particular focus on the stress at the weld toe. For the first time, near-surface neutron diffraction data have shown the extent of local stress variation at the critical, fusion boundary location. Compression was evident for the three measurement orientations at the fusion boundaries. Compressive longitudinal residual stresses and tensile trans- verse stresses were measured in the weld metal.
DOI: 10.5519/qd.uh24gfwu
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (32 records)
DOI: 10.17863/cam.40408
title: Research data supporting 'Genome-wide CRISPR screening identifies new regulators of glycoprotein secretion'

description: Files S1 - S6 contain underlying data for figures published in the paper. S1: sgRNA counts of unsorted and sorted population from the CRISPR screen detailed in the paper, which aimed to identify genes that regulate glycoprotein secretion. Sheet 1 is a table of sgRNA counts, including the gene name that each sgRNA targets. Sheet 2 includes full descriptions of the populations. S2: MaGECK (version 0.5.7) analysis of sgRNA counts from the CRISPR screen. Both MaGECK-MLE and MaGECK-RRA results are shown. False discovery rates (FDR) from this table were used to create figure 1C-E S3: Raw FCS files from flow cytometry staining of sorted samples, used to create figure 1B. S4: Raw chemiluminescence data, used to create figure 2. S5: Unedited image files used in Figures 3D, 4 and 5. S6: Data output from Cell Profiler, showing total number of cells identified per image and number of cells classified as having fragmented or intact Golgi. E1-E4 is extended data for figures and tables published in the paper. E1: Figure of all genes analysed for having fragmented Golgi; top hits from this talbe are shown in Figure 3C. Percentage of cells with fragmented Golgi for all of the hits screened in the tertiary screen. As in Figure 3C, hits are arranged alphabetically and coloured by cell count, with darker blue spots representing more confluent wells. E2: Sequence of P5 primers used for PCR amplification of sgRNA. E3: Sequence of P7 primers used for PCR amplification of sgRNA. E4: Details of the siGenome pooled siRNA library used in secondary screening.
DOI: 10.6084/m9.figshare.c.3638561_d9.v1
title: MOESM7 of Insights into isoprene production using the cyanobacterium Synechocystis sp. PCC 6803

description: Additional file 7. Complete data set of transcriptomic analysis.
DOI: 10.17863/cam.6925
title: Research data supporting: 'Combined emergency braking and turning of articulated heavy vehicles' by G Morrison and D Cebon

description: A set of .fig files, that can be opened by Matlab or Octave, providing all data needed to generate the figures in the paper.
DOI: 10.6084/m9.figshare.c.3638564_d2.v1
title: Additional file 2: of Galectin 3: association to neurohumoral activity, echocardiographic parameters and renal function in outpatients with heart failure

description: A: Comparison of plasma Galectin-3 in patients younger or equal to 70 years vs. older than 70 years, P = 0.091. B: Kruskal-Wallis test: P = 0.0116. Comparison of plasma Galectin-3 in patients with NYHA I + II vs NYHA III + IV, P = 0.234. C: Comparison of plasma Galectin-3 in patients with or without chronic kidney disease (defined as eGFR above or below 60 ml/min/m2), P
DOI: 10.6084/m9.figshare.c.3638567_d1.v1
title: Additional file 2: Table S2. of Genomic ancestry estimation quantifies use of wild species in grape breeding

description: Matrix of genome-wide average IBS values for 64 hybrids. (XLSX 82 kb)
DOI: 10.6084/m9.figshare.c.3638567_d4.v1
title: Additional file 1: Table S1. of Genomic ancestry estimation quantifies use of wild species in grape breeding

description: A list of the 78 cultivars used in this study as well as location and institute. Sample information is also provided for the additional 16 samples which were discarded during the genotyping analysis pipeline and they are highlighted in yellow. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3638579_d1.v1
title: Additional file 1: Table S1. of Next-generation sequencing methylation profiling of subjects with obesity identifies novel gene changes

description: The 13,130 differentially methylated cytosines (DMCs; Pâ
DOI: 10.6084/m9.figshare.c.3638579_d2.v1
title: Additional file 2: Table S2. of Next-generation sequencing methylation profiling of subjects with obesity identifies novel gene changes

description: The probes (nâ  =â  99) remaining from the microarray data that met the false discovery rate (FDR) correction criteria of Pâ
DOI: 10.17863/cam.66359
title: Research data supporting Triboelectric Yarns with Electrospun Functional Polymer Coatings for Highly Durable and Washable Smart Textile Applications

description: Dataset for Triboelectric Yarns with Electrospun Functional Polymer Coatings for Highly Durable and Washable Smart Textile Applications. The dataset is divided into folders each containing the raw data of each figure in the publication. The data format is text, csv and excel for graphs. The images are in jpg format. The atomic force microscopy data can be accessed using Nanoscope Analysis software (Bruker) or with Python using the pySPM package.
DOI: 10.6084/m9.figshare.c.3638579_d3.v1
title: Additional file 3: Table S3. of Next-generation sequencing methylation profiling of subjects with obesity identifies novel gene changes

description: The 170 differentially methylated regions (DMRs; Pâ
DOI: 10.34740/kaggle/dsv/10228937
title: Vietnam SARS-CoV-2 | COVID-19 Data
DOI: 10.6084/m9.figshare.c.3638627_d2.v1
title: MOESM1 of F4+ ETEC infection and oral immunization with F4 fimbriae elicits an IL-17-dominated immune response

description: Additional file 1. F4 + ETEC number detected in the faeces after F4 + ETEC infection. Piglets were orally inoculated with either 1010 CFU F4+ ETEC (Pig 4 to 6) in 10Â mL PBS or only PBS (Pig 1 to 3) as control at day 0 and 1. Faecal samples were collected from day 0 to 4 and inoculated onto blood agar plates and then the number of F4-specific hemolytic E. coli colonies was determined by dot blotting the colonies on nitrocellulose membranes and detecting F4 fimbriae with an F4ac-specific MAb.
DOI: 10.15468/dl.dkc2a7
title: Occurrence Download

description: A dataset containing 169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Ontario Breeding Bird Atlas 2001-2005",
 "Geometry POLYGON((-79.01931 43.86947,-78.89025 43.86947,-78.89025 44.03456,-79.01931 44.03456,-79.01931 43.86947))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 169 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037902-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.59818
title: Research data supporting 'The material politics houses at Çatalhöyük' (Appendices A & B)

description: Appendix A: Relative timelines produced from the Harris Matrices of 12 Çatalhöyük buildings in XLSX format. See A.1 for introduction and legend. Appendix B: Feature-level data derived from relative timelines, in XLSX format, and feature typology in PDF format.
DOI: 10.6084/m9.figshare.c.3638645_d1.v1
title: Additional file 5: of The making of a pest: Insights from the evolution of chemosensory receptor families in a pestiferous and invasive fly, Drosophila suzukii

description: Gr alignment file (Phylip). Gustatory receptor peptide sequences of Drosophila suzukii (Dsuz), D. biarmipes (Dbia), D. takahashii (Dtak) and D. melanogaster (Dmel) ≥ 340 aa in length were multiply aligned using MUSCLE v3.8.31. (PHY 274 kb)
DOI: 10.6084/m9.figshare.c.3638645_d2.v1
title: Additional file 3: of The making of a pest: Insights from the evolution of chemosensory receptor families in a pestiferous and invasive fly, Drosophila suzukii

description: Or alignment file (Phylip). Olfactory receptor peptide sequences of Drosophila suzukii (Dsuz), D. biarmipes (Dbia), D. takahashii (Dtak) and D. melanogaster (Dmel) ≥ 360 aa in length were multiply aligned using MUSCLE v3.8.31. (PHY 229 kb)
DOI: 10.6084/m9.figshare.c.3638645_d5.v1
title: Additional file 2: Table S1. of The making of a pest: Insights from the evolution of chemosensory receptor families in a pestiferous and invasive fly, Drosophila suzukii

description: Non-synonymous (dN) and synonymous (dS) substation rates and ratios (dN/dS) of Ors in members of the suzukii-takahashii clade using D. melanogaster as an outgroup. Table S2. Non-synonymous (dN) and synonymous (dS) substation rates and ratios (dN/dS) of Grs in members of the suzukii-takahashii clade using D. melanogaster as an outgroup. Table S3. The number of functional Or genes in each orthologous group for nine species in the melanogaster group based on Almeida et al. [50]. Table S4. The number of functional Gr genes in each orthologous group for nine species in the melanogaster group based on Almeida et al. [50]. Table S5. Summary of the chemoreceptors in the suzukii-takahashii clade under episodic positive selection as revealed by aBSREL analyses. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.c.3638645_d4.v1
title: Additional file 4: of The making of a pest: Insights from the evolution of chemosensory receptor families in a pestiferous and invasive fly, Drosophila suzukii

description: Or phylogenetic tree file (Nexus). Phylogenetic analysis of Ors in Drosophila suzukii (Dsuz), D. biarmipes (Dbia), D. takahashii (Dtak) and D. melanogaster (Dmel) using a Maximum Likelihood method. Evolutionary history was inferred using a Maximum Likelihood method based on the JTT matrix-based model. The tree was constructed using RAxML under the JTT model of substitution with NNI topology search, based on an amino acid alignment by MUSCLE. Branch support was estimated using 500 bootstrap replications. The tree is rooted with Orco. (NEX 26Â kb)
DOI: 10.17863/cam.107163
title: Data supporting "The socioecological benefits and consequences of oil palm cultivation in its native range: The Sustainable Oil Palm in West Africa (SOPWA) Project"

description: Data associated with the publication "The socioecological benefits and consequences of oil palm cultivation in its native range: The Sustainable Oil Palm in West Africa (SOPWA) Project", which has been accepted for publication in "Science of the Total Environment." There are two datasets. First, findings from a systematic review of oil palm-related research in an African context. Second, field-based findings from a large-scale, field-based project in Liberia (the Sustainable Oil Palm in West Africa, 'SOPWA', Project), focussed on differences between forest and traditionally- and industrially-managed oil palm systems. SOPWA Project data include plot-based data on soil temperature (collected using iButton dataloggers), ground vegetation cover (collected using eye estimates), and canopy cover (collected using in-field photographs and subsequent processing using Adobe Photoshop). Data were analysed in R using varying statistical methods (GLMMs, GAMMs) and visualisation techniques.
DOI: 10.6084/m9.figshare.c.3638645_d7.v1
title: Additional file 1: Table S1. of The making of a pest: Insights from the evolution of chemosensory receptor families in a pestiferous and invasive fly, Drosophila suzukii

description: D. suzukii Or coding and peptide sequences. Table S2. D. suzukii Gr coding and peptide sequences. Table S3. D. biarmipes Or coding and peptide sequences. Table S4. D. biarmipes Gr coding and peptide sequences. Table S5. D. takahashii Or coding and peptide sequences. Table S6. D. takahashii Gr coding and peptide sequences. (XLSX 379Â kb)
DOI: 10.17863/cam.11559
title: Research data supporting "Flow visualisation and modelling of solid soap extrusion"

description: MATLABFigs.zip contains the MATLAB files for all of the figures which are plots/charts in the manuscript. One can extract the numerical values from the MATLAB .fig file
DOI: 10.6084/m9.figshare.c.3638792_d1.v1
title: Additional file 1: Table S1. of Draft genome sequence of Cellulomonas carbonis T26T and comparative analysis of six Cellulomonas genomes

description: Putative CAZy family and locus_tag number in the six cellulomonas genomes. Table S2. Putative cellulases in the six cellulomonas genomes. Table S3. Putative hemicellulases in the six cellulomonas genomes. Table S4. Putative amylases in the six cellulomonas genomes. (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.c.3638873_d5.v1
title: Additional file 11: of Metabolome analysis of 20 taxonomically related benzylisoquinoline alkaloid-producing plants

description: Compilation of exact masses, acquired using UPLC-FTMS operating in positive ion mode, corresponding to empirical formulae of known benzylisoquinoline alkaloids (BIAs). UPLC retention time (Rt) and total ion count is provided for each putative BIA ionic mass (m/z) for all 4 replicates (labeled A, B, C, D) for each of 20 plant species. Species abbreviations are defined in Table 1. Each ionic mass (m/z) is putatively identified as an alkaloid, or group of alkaloids (‘mass group’) possessing an empirical formula matching the observed exact mass within an error range of ± 2.0 ppm. (XLSX 143 kb)