cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5557538
title: Ubiquitin Ligase Wwp1 Gene Deletion Attenuates Diastolic Dysfunction in Pressure Overload Hypertrophy

description: <strong><em>Background.</em></strong> Heart failure with a preserved left ventricular (LV) ejection fraction (HFpEF) often arises from a prolonged LV pressure overload (LVPO) and accompanied by abnormal extracellular matrix (ECM) accumulation. The E3 ubiquitin ligase WWP1 is a fundamental determinant ECM turnover. We tested the hypothesis that genetic ablation of<em> Wwp1</em> would alter the progression of LVPO induced HFpEF. <strong><em>Methods/Results</em></strong><em>.</em> LV echocardiography in mice with global <em>Wwp1</em> deletion (n=41; <em>Wwp1<sup>-/-</sup></em>) was performed at 12 weeks of age (Baseline) and then at 2 and 4 weeks following LVPO (transverse aortic banding) or surgery without LVPO induction. Age-matched wild type mice (<em>Wwp1<sup>+/+</sup></em>; n=33) underwent identical protocols. LV EF remained constant and unchanged with LVPO and LV mass increased in both groups but was lower in the <em>Wwp1<sup>-/-</sup></em> mice. With LVPO, the E/A ratio, an index of LV filling, was 3.97 + 0.46 in <em>Wwp1<sup>+/+</sup></em> but was 1.73 + 0.19 in the <em>Wwp1<sup>-/-</sup></em> group (p&lt;0.05). At the transcriptional level, mRNA for fibrillar collagens (types I and III) decreased by approximately 50% in <em>Wwp1<sup>-/-</sup></em> compared to the <em>Wwp1<sup>+/+</sup></em> group at 4 weeks post-LVPO (p&lt;0.05) and was paralleled by a similar difference in LV fibrillar collagen content as measured by histochemistry. Moreover, mRNA levels for determinants favoring ECM accumulation, such as transforming growth factor (TGF) increased with LVPO, but were lower in the <em>Wwp1<sup>-/-</sup></em> group. <strong><em>Summary.</em></strong> The absence of <em>Wwp1</em> reduced the development of LVH and subsequent progression to HFpEF. Modulating the WWP1 pathway could be a therapeutic target to alter the natural history of HFpEF.
DOI: 10.5281/zenodo.4452973
title: Ubiquitin Ligase Wwp1 Gene Deletion Attenuates Diastolic Dysfunction in Pressure Overload Hypertrophy

description: <strong><em>Background.</em></strong> Heart failure with a preserved left ventricular (LV) ejection fraction (HFpEF) often arises from a prolonged LV pressure overload (LVPO) and accompanied by abnormal extracellular matrix (ECM) accumulation. The E3 ubiquitin ligase WWP1 is a fundamental determinant ECM turnover. We tested the hypothesis that genetic ablation of<em> Wwp1</em> would alter the progression of LVPO induced HFpEF. <strong><em>Methods/Results</em></strong><em>.</em> LV echocardiography in mice with global <em>Wwp1</em> deletion (n=41; <em>Wwp1<sup>-/-</sup></em>) was performed at 12 weeks of age (Baseline) and then at 2 and 4 weeks following LVPO (transverse aortic banding) or surgery without LVPO induction. Age-matched wild type mice (<em>Wwp1<sup>+/+</sup></em>; n=33) underwent identical protocols. LV EF remained constant and unchanged with LVPO and LV mass increased in both groups but was lower in the <em>Wwp1<sup>-/-</sup></em> mice. With LVPO, the E/A ratio, an index of LV filling, was 3.97 + 0.46 in <em>Wwp1<sup>+/+</sup></em> but was 1.73 + 0.19 in the <em>Wwp1<sup>-/-</sup></em> group (p&lt;0.05). At the transcriptional level, mRNA for fibrillar collagens (types I and III) decreased by approximately 50% in <em>Wwp1<sup>-/-</sup></em> compared to the <em>Wwp1<sup>+/+</sup></em> group at 4 weeks post-LVPO (p&lt;0.05) and was paralleled by a similar difference in LV fibrillar collagen content as measured by histochemistry. Moreover, mRNA levels for determinants favoring ECM accumulation, such as transforming growth factor (TGF) increased with LVPO, but were lower in the <em>Wwp1<sup>-/-</sup></em> group. <strong><em>Summary.</em></strong> The absence of <em>Wwp1</em> reduced the development of LVH and subsequent progression to HFpEF. Modulating the WWP1 pathway could be a therapeutic target to alter the natural history of HFpEF.
DOI: 10.5281/zenodo.3597154
title: Iquique earthquake preparatory phase / Aden-Antoniow 2020

description: Seismic catalog created for the study "Statistical evidence of a seismic quiescence before the Mw8.1 Iquique earthquake, Chile"
description: YEAR MONTH DAY HOUR MINUTES SECONDES LAT LON DEPTH ML dML
DOI: 10.5281/zenodo.3597153
title: Iquique earthquake preparatory phase / Aden-Antoniow 2020

description: Seismic catalog created for the study "Statistical evidence of a seismic quiescence before the Mw8.1 Iquique earthquake, Chile"
description: YEAR MONTH DAY HOUR MINUTES SECONDES LAT LON DEPTH ML dML
DOI: 10.6084/m9.figshare.16776112.v1
title: Candida auris wavelengths of LEDs for arrays

description: Disinfection of Candida auris using UVC
DOI: 10.6084/m9.figshare.16776112
title: Wavelengths of UVC LED arrays used in Candida auris study

description: Disinfection of Candida auris using UVC
DOI: 10.6084/m9.figshare.16776112.v3
title: Wavelengths of UVC LED arrays used in Candida auris study

description: Disinfection of Candida auris using UVC
DOI: 10.6084/m9.figshare.16776112.v2
title: Candida auris wavelengths of LEDs for arrays

description: Disinfection of Candida auris using UVC
DOI: 10.25934/pr00007438
title: 20211008b_ProdSmokeTest_RB

description: q
DOI: 10.5281/zenodo.5260732
title: Crop-specific global fertilizer application rates from "Closing yield gaps through nutrient and water management"

description: Crop-specific global maps of N, P2O5, and K2O fertilizer application rates circa the year 2000 from the following paper: Mueller, ND, JS Gerber, M Johnston, DK Ray, N Ramankutty, and JA Foley. 2012. Closing yield gaps through nutrient and water management. <em>Nature</em> <strong>490</strong>: 254–257 Data are provided at five arc-minute resolution and are saved as netcdf files. Fertilizer application rates are estimated from reconciling various national and subnational data sources. See the Supplementary Information from the 2012 paper for a full description of data sources and methods. Data quality for each grid cell is described in a map layer. Files containing the text "totalcons" sum nutrient consumption across crops per grid cell, using crop harvested areas from Monfreda et al. 2008 Global Biogeochemical Cycles. For maize, wheat, and soybean N application rates, additional maps and csv files (containing the text "politboundaries") identify the political units around the world containing unique information. Crops and crop group categories are consistent with those utilized in Monfreda et al. 2008 Global Biogeochemical Cycles.
description: {"references": ["Mueller, ND, JS Gerber, M Johnston, DK Ray, N Ramankutty, and JA Foley. 2012. Closing yield gaps through nutrient and water management. Nature\u00a0490: 254\u2013257"]}
DOI: 10.5281/zenodo.5260731
title: Crop-specific global fertilizer application rates from "Closing yield gaps through nutrient and water management"

description: Crop-specific global maps of N, P2O5, and K2O fertilizer application rates circa the year 2000 from the following paper: Mueller, ND, JS Gerber, M Johnston, DK Ray, N Ramankutty, and JA Foley. 2012. Closing yield gaps through nutrient and water management. <em>Nature</em> <strong>490</strong>: 254–257 Data are provided at five arc-minute resolution and are saved as netcdf files. Fertilizer application rates are estimated from reconciling various national and subnational data sources. See the Supplementary Information from the 2012 paper for a full description of data sources and methods. Data quality for each grid cell is described in a map layer. Files containing the text "totalcons" sum nutrient consumption across crops per grid cell, using crop harvested areas from Monfreda et al. 2008 Global Biogeochemical Cycles. For maize, wheat, and soybean N application rates, additional maps and csv files (containing the text "politboundaries") identify the political units around the world containing unique information. Crops and crop group categories are consistent with those utilized in Monfreda et al. 2008 Global Biogeochemical Cycles.
description: {"references": ["Mueller, ND, JS Gerber, M Johnston, DK Ray, N Ramankutty, and JA Foley. 2012. Closing yield gaps through nutrient and water management. Nature\u00a0490: 254\u2013257"]}
DOI: 10.6073/pasta/a9aafa6631b3edfc35823c569aef23ac
title: PIE LTER Methane isotopes (13C and D) for methane in sediments and dissolved in surface water from four headwater streams in Massachusetts and New Hampshire.

description: Gas samples for methane isotopes were collected from four headwater streams. Benthic gas samples were collected by physcially distrubing the sediment and collecting ebullated gas. Dissolved gas samples were extracted from surface water. 13C and deuterium isotopes were analyzed. Relevant publications: A.L. Robison (2021) Carbon emissions from streams and river: Integrating methane emission pathways and storm carbon dioxide emissions into stream and river carbon balances. Doctoral Dissertation. University of New Hampshire. A.L. Robison, W.M. Wollheim, C.R. Perryman, A. Cotter, J.E. Mackay, R.K. Varner, P. Clarizia, and J.G. Ernakovich (in review). Dominance of diffusive methane emissions from lowland headwater streams promotes oxidation and isotopic enrichment. Frontiers in Environmental Science.
DOI: 10.15468/w8hxq9
title: Synopsis on Passalidae family (Coleoptera: Scarabaeoidea) of Brazil with description of a new species of Veturius Kaup, 1871

description: This dataset contains the digitized treatments in Plazi based on the original journal article Fonseca, Cláudio Ruy Vasconcelos Da, Reyes-Castillo, Pedro (2004): Synopsis on Passalidae family (Coleoptera: Scarabaeoidea) of Brazil with description of a new species of Veturius Kaup, 1871. Zootaxa 789 (1): 1-26, DOI: 10.11646/zootaxa.789.1.1, URL: https://biotaxa.org/Zootaxa/article/view/zootaxa.789.1.1
DOI: 10.17909/t9-f5m1-3825
title: Data from paper "A Deep Search for Faint Chandra X-ray Sources, Radio Sources, and Optical Counterparts in NGC 6752"
DOI: 10.6084/m9.figshare.16776190.v1
title: Data requiring additional analysis

description: Data is taken from the cited literature as shown on the reference tab.
DOI: 10.6084/m9.figshare.16776190
title: Data requiring additional analysis

description: Data is taken from the cited literature as shown on the reference tab.
DOI: 10.5517/ccdc.csd.cc23r9sz
title: CCDC 1958821: Experimental Crystal Structure Determination

description: Related Article: Halyna I. Buvailo, Valeriya G. Makhankova, Vladimir N. Kokozay, Iryna V. Omelchenko, Svitlana V. Shishkina, Alina Bieńko, Mariia V. Pavliuk, Sergii I. Shylin|2021|RSC Advances|11|32119|doi:10.1039/D1RA05030C
DOI: 10.23728/b2share.1d5f68a6816e48ceb62cf8f0887f6e9a
title: The Chartbook of Economic Inequality

description: This Chartbook presents the empirical evidence about long-run changes in economic inequality. The chartbook covers 25 countries – often over the course of more than one hundred years. For each country a chart shows how different dimensions of economic inequality have changed over time. A detailed description of the data sources is given for each country.
DOI: 10.6084/m9.figshare.16776256.v1
title: FilteredSNPS_Family22QTLMapping.vcf

description: Filtered SNP file when including individuals with &lt; 65% missing data. This filtering was used to retain the parents of Family 22 for QTL mapping. Sequences of individuals from Family 22 were removed from this vcf and subsequent QTL mapping was performed as described in the publication.
DOI: 10.6084/m9.figshare.16776256
title: FilteredSNPS_Family22QTLMapping.vcf

description: Filtered SNP file when including individuals with &lt; 65% missing data. This filtering was used to retain the parents of Family 22 for QTL mapping. Sequences of individuals from Family 22 were removed from this vcf and subsequent QTL mapping was performed as described in the publication.
DOI: 10.15468/5rjb4x
title: Simulium (Trichodagmia) (Diptera, Simuliidae) phylogeny revisited: the Neotropical and Afrotropical connection

description: This dataset contains the digitized treatments in Plazi based on the original journal article Molina, Óscar S., Gil-Azevedo, Leonardo H. (2021): Simulium (Trichodagmia) (Diptera, Simuliidae) phylogeny revisited: the Neotropical and Afrotropical connection. European Journal of Taxonomy 773: 80-119, DOI: https://doi.org/10.5852/ejt.2021.773.1517
DOI: 10.6084/m9.figshare.16776889
title: AllPedigree.csv

description: Pedigree used to estimate narrow-sense heritability and genetic correlations for low salinity tolerance in the Eastern oyster. Methods for conducting these analyses are explained in the manuscript.
DOI: 10.6084/m9.figshare.16776889.v1
title: AllPedigree.csv

description: Pedigree used to estimate narrow-sense heritability and genetic correlations for low salinity tolerance in the Eastern oyster. Methods for conducting these analyses are explained in the manuscript.
DOI: 10.6084/m9.figshare.14376749
title: Contemporary Global Syphilis Lineages 2021

description: Source files and Rnotebook for analysis of global Treponema pallidum subspecies pallidum genomic diversity, distribution and lineage dynamics "Global phylogeny of <i>Treponema pallidum</i> lineages reveals recent expansion and spread of contemporary syphilis" by M.A Beale et al, 2021
DOI: 10.5281/zenodo.5557564
title: K-mer matrix for R-gene enrichment data of wheat Watkins diversity panel.

description: K-mer matrix for RenSeq data of wheat lines including 300 wheat landraces from Watkins collection. The matrix is divided into 40 parts. The file “watkins_matrix_header.txt” contains the accession names and also specifies the order in which presence/absence of a k-mer is scored in the presence/absence matrix.
DOI: 10.5281/zenodo.5557563
title: K-mer matrix for R-gene enrichment data of wheat Watkins diversity panel.

description: K-mer matrix for RenSeq data of wheat lines including 300 wheat landraces from Watkins collection. The matrix is divided into 40 parts. The file “watkins_matrix_header.txt” contains the accession names and also specifies the order in which presence/absence of a k-mer is scored in the presence/absence matrix.
DOI: 10.18434/mds2-2463
title: Effects of Thermal Aging on Molar Mass of Ultra-High Molar Mass Polyethylene Fibers
DOI: 10.3886/e111366v1-98361
title: Data and Code for: Maternal Depression, Women's Empowerment, and Parental Investment: Evidence from a Randomized Control Trial

description: We evaluate the medium-term impacts of treating maternal depression on women's mental health, financial empowerment, and parenting decisions. We leverage variation induced by a cluster-randomized control trial that provided psychotherapy to 903 prenatally depressed mothers in rural Pakistan. It was one of the world's largest psychotherapy interventions, and it dramatically reduced postpartum depression. Seven years after psychotherapy concluded, we returned to the study site to find that impacts on women's mental health had persisted, with a 17% reduction in depression rates. The intervention also improved women's financial empowerment and increased both time- and money-intensive parental investments by between 0.2 and 0.3 standard deviations.
description: Response Rates: The starting experimental sample consisted of 463 treated and 440 control mothers. At the 7-year follow-up, we located 295 of the control dyads and 289 of the intervention arm dyads, together corresponding to 64.8% of the baseline sample.A third of the attrition was due to child mortality which was not different by treatment status. The non-experimental group interviewed at the 7-year follow-up consisted of 300 mother-child dyads, 150 from each arm.
description: All women in their third trimester of pregnancy (married, ages 16-45, no other significant illness) who met the DSM-IV criteria for Major Depressive Episode were invited to participate in the study. A total of 3898 women were identified, with 8% refusing before any assessment, and 2% were not found.
description: The Thinking Healthy Program (THP) was a cluster-randomized trial addressing perinatal depression in rural Punjab, Pakistan. <br>The trial was randomized across 40 clusters, these being Union Councils, the smallest geopolitical unit. Twenty clusters were randomizedinto receiving the intervention and twenty to the control arm. Womenwere enrolled during April 2005-March 2006. All women in their thirdtrimester of pregnancy (married, ages 16-45, no other significant illness)who met the DSM-IV criteria for Major Depressive Episode were invitedto participate in the study. A total of 3898 women were identified, with8% refusing before any assessment, and 2% were not found. <br>A total of 3518 women were assessed for clinical depression, with 903(26%) identified as prenatally depressed, a prevalence consistent withprevious estimates for this region (Rahman et al., 2003). There were 463depressed mothers in the clusters randomized to the intervention, and440 in the control arm. Only women diagnosed as depressed completedthe baseline survey. <br>.
description: computer-assisted personal interview (CAPI); computer-assisted self interview (CASI);
DOI: 10.6084/m9.figshare.16777612
title: HERBERT INFLUENZA A.knwf 1.knwf

description: Workflow de um modelo de predição pro influenza A.
DOI: 10.6073/pasta/5f7031ae1b9975fa72231f7c2972e7eb
title: LAGOS - Predicted and observed maximum depth values for lakes in a 17-state region of the U.S.

description: This dataset includes predicted and observed values of maximum depth for lakes in the upper Midwest and northeast United States. All observed values came from LAGOS ver 1.040.0 (LAke multi-scaled GeOSpatial and temporal database), an integrated database of lake ecosystems (Soranno et al. 2015). LAGOS contains a complete census of lakes great than or equal to 4 ha with corresponding geospatial information for a 17-state region of the U.S., and a subset of the lakes has observational data on morphometry and chemistry. Approximately 40 different sources of data were compiled for this dataset and were mostly generated by government agencies (state, federal, tribal) and universities. Here, observed maximum depth values (n = 8164) were used to train and validate a predictive mixed effects model for lake depth using terrestrial and lake morphology as predictors (Oliver et al., submitted). Predicted values (n = 50 607) generated by the model had a root mean squared error of 7.1 m. This research was supported by the NSF Macrosystem Biology awards 1065786, 1065818, and 1065649.
DOI: 10.5281/zenodo.5557685
title: Watkins RenSeq assemblies 1

description: RenSeq assemblies of wheat lines including Watkins landraces generated using CLC assembler.
DOI: 10.5281/zenodo.5557684
title: Watkins RenSeq assemblies 1

description: RenSeq assemblies of wheat lines including Watkins landraces generated using CLC assembler.
DOI: 10.23645/epacomptox.16744162.v2
title: The US CPSC/EPA Flame Retardant and Organohalogen Flame Retardant Inventory

description: Katherine Phillips dataset for journal article "The US CPSC/EPA Flame Retardant and Organohalogen Flame Retardant Inventory" for Scientific Data<br>Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.6084/m9.figshare.14356415
title: Copulatory wounding in a planarian - dataset-20210401T143642Z-001.zip

description: Dataset from the article "Morphology of parenchymally implanted foreign bodies indicates copulatory wounding in a planarian", by Fernando Carbayo & José Marian, published in Journal of Morphology; https://doi.org/10.1002/jmor.21418. Contains photographs of the histological slides from Specimens 1 (F2391), 2 (F4024) and 3 (F4081). <br> <br> <br> @font-face {font-family:Arial; panose-1:2 11 6 4 2 2 2 2 2 4; mso-font-charset:0; mso-generic-font-family:auto; mso-font-pitch:variable; mso-font-signature:-536859905 -1073711037 9 0 511 0;}@font-face {font-family:"Cambria Math"; panose-1:2 4 5 3 5 4 6 3 2 4; mso-font-charset:0; mso-generic-font-family:auto; mso-font-pitch:variable; mso-font-signature:-536870145 1107305727 0 0 415 0;}p.MsoNormal, li.MsoNormal, div.MsoNormal {mso-style-unhide:no; mso-style-qformat:yes; mso-style-parent:""; margin:0cm; margin-bottom:.0001pt; line-height:115%; mso-pagination:widow-orphan; font-size:11.0pt; font-family:Arial; mso-fareast-font-family:Arial; mso-ansi-language:UZ-CYR;}.MsoChpDefault {mso-style-type:export-only; mso-default-props:yes; font-size:11.0pt; mso-ansi-font-size:11.0pt; mso-bidi-font-size:11.0pt; font-family:Arial; mso-ascii-font-family:Arial; mso-fareast-font-family:Arial; mso-hansi-font-family:Arial; mso-bidi-font-family:Arial; mso-ansi-language:UZ-CYR;}.MsoPapDefault {mso-style-type:export-only; line-height:115%;}div.WordSection1 {page:WordSection1;}
DOI: 10.21227/ta5m-xe98
title: Dataset for "An Efficient Control-oriented Modeling Approach for Vibration-prone Delta 3D printers using Receptance Coupling"

description: Delta 3D printers have the potential to significantly increase throughput in additive manufacturing because they enable faster and more precise motion when compared to traditional serial-axis 3D printers. Further improvements in motion speed and part quality can be realized through model-based feedforward vibration control, as demonstrated on several serial-axis 3D printers. However, delta 3D printers have not benefited from model-based controllers due to their coupled nonlinear dynamics which vary as a function of position. In this paper, we propose a framework to obtain linear models of delta 3D printers as functions of position. We decompose the dynamics into two sub-models: (1) an experimentally-identified sub-model containing decoupled vibration dynamics; and (2) an analytically-derived sub-model containing coupled rigid-body dynamics. These two sub-models are combined into one using receptance coupling. Employing the proposed approach, experiments are used to demonstrate reasonably accurate predictions of the position-dependent vibration dynamics of a delta 3D printer across its workspace using only two frequency response measurements at one location.
DOI: 10.6084/m9.figshare.16777624
title: site_coverage.tsv.gz

description: Coverage for all C. inopinata sites and samples.<br>
DOI: 10.6084/m9.figshare.16777624.v1
title: site_coverage.tsv.gz

description: Coverage for all C. inopinata sites and samples.<br>
DOI: 10.7910/dvn/3lutfs
title: XBX-4::GFP IFT kymographs and movies

description: The files and folders contain, movies of the XBX-4-GFP in the amphid and phasmid cilia of C. elegans, kymographs when possible from the same movies and quantification of particle velocities from such kymographs.
DOI: 10.5281/zenodo.5557721
title: Watkins RenSeq assemblies 2

description: RenSeq assemblies of wheat lines including Watkins landraces generated using CLC assembler.
DOI: 10.5281/zenodo.5557720
title: Watkins RenSeq assemblies 2

description: RenSeq assemblies of wheat lines including Watkins landraces generated using CLC assembler.