cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25020998
title: Tehran_city_OSM_history.pbf

description: Combining both intrinsic and extrinsic approaches in evaluating quality of Volunteered Geographic Information (VGI) data, our work explores whether intrinsic methods can be relied upon to evaluate VGI data quality and, if so, which criteria are most effective. In our study, we analyze three criteria: contribution volume, number of contributors, and population density, to assess their impact on the positional accuracy of OpenStreetMap (OSM) features, serving as an indicator of Volunteered Geographic Information (VGI) data quality.
DOI: 10.6084/m9.figshare.25020998.v1
title: Tehran_city_OSM_history.pbf

description: Combining both intrinsic and extrinsic approaches in evaluating quality of Volunteered Geographic Information (VGI) data, our work explores whether intrinsic methods can be relied upon to evaluate VGI data quality and, if so, which criteria are most effective. In our study, we analyze three criteria: contribution volume, number of contributors, and population density, to assess their impact on the positional accuracy of OpenStreetMap (OSM) features, serving as an indicator of Volunteered Geographic Information (VGI) data quality.
DOI: 10.6084/m9.figshare.24949221.v1
title: N<sup>6</sup>-methyladenosine (M<sup>6</sup>A) in fetal offspring modifies mitochondrial gene expression following gestational nano-TiO<sub>2</sub> inhalation exposure

description: N<sup>6</sup>-methyladenosine (m<sup>6</sup>A) is the most prominent epitranscriptomic modification to RNA in eukaryotes, but it’s role in adaptive changes within the gestational environment are poorly understood. We propose that gestational exposure to nano titanium dioxide (TiO<sub>2</sub>) contributes to cardiac m<sup>6</sup>A methylation in fetal offspring and influences mitochondrial gene expression. 10-week-old pregnant female FVB/NJ wild-type mice underwent 6 nonconsecutive days of whole-body inhalation exposure beginning on gestational day (GD) 5. Mice were exposed to filtered room air or nano-TiO<sub>2</sub> with a target aerosol mass concentration of 12 mg/m<sup>3</sup>. At GD 15 mice were humanely killed and cardiac RNA and mitochondrial proteins extracted. Immunoprecipitation with m<sup>6</sup>A antibodies was performed followed by sequencing of immunoprecipitant (m<sup>6</sup>A) and input (mRNA) on the Illumina NextSeq 2000. Protein extraction, preparation, and LC-MS/MS were used for mitochondrial protein quantification. There were no differences in maternal or fetal pup weights, number of pups, or pup heart weights between exposure and control groups. Transcriptomic sequencing revealed 3648 differentially expressed mRNA in nano-TiO<sub>2</sub> exposed mice (<i>Padj</i> ≤ 0.05). Transcripts involved in mitochondrial bioenergetics were significantly downregulated (83 of 85 genes). 921 transcripts revealed significant m<sup>6</sup>A methylation sites (<i>Padj</i> ≤ 0.10). 311 of the 921 mRNA were identified to have both 1) significantly altered expression and 2) differentially methylated sites. Mitochondrial proteomics revealed decreased expression of ATP Synthase subunits in the exposed group (<i>P</i> ≤ 0.05). The lack of m<sup>6</sup>A modifications to mitochondrial transcripts suggests a mechanism for decreased transcript stability and reduced protein expression due to gestational nano-TiO<sub>2</sub> inhalation exposure.
DOI: 10.6084/m9.figshare.24949221
title: N<sup>6</sup>-methyladenosine (M<sup>6</sup>A) in fetal offspring modifies mitochondrial gene expression following gestational nano-TiO<sub>2</sub> inhalation exposure

description: N<sup>6</sup>-methyladenosine (m<sup>6</sup>A) is the most prominent epitranscriptomic modification to RNA in eukaryotes, but it’s role in adaptive changes within the gestational environment are poorly understood. We propose that gestational exposure to nano titanium dioxide (TiO<sub>2</sub>) contributes to cardiac m<sup>6</sup>A methylation in fetal offspring and influences mitochondrial gene expression. 10-week-old pregnant female FVB/NJ wild-type mice underwent 6 nonconsecutive days of whole-body inhalation exposure beginning on gestational day (GD) 5. Mice were exposed to filtered room air or nano-TiO<sub>2</sub> with a target aerosol mass concentration of 12 mg/m<sup>3</sup>. At GD 15 mice were humanely killed and cardiac RNA and mitochondrial proteins extracted. Immunoprecipitation with m<sup>6</sup>A antibodies was performed followed by sequencing of immunoprecipitant (m<sup>6</sup>A) and input (mRNA) on the Illumina NextSeq 2000. Protein extraction, preparation, and LC-MS/MS were used for mitochondrial protein quantification. There were no differences in maternal or fetal pup weights, number of pups, or pup heart weights between exposure and control groups. Transcriptomic sequencing revealed 3648 differentially expressed mRNA in nano-TiO<sub>2</sub> exposed mice (<i>Padj</i> ≤ 0.05). Transcripts involved in mitochondrial bioenergetics were significantly downregulated (83 of 85 genes). 921 transcripts revealed significant m<sup>6</sup>A methylation sites (<i>Padj</i> ≤ 0.10). 311 of the 921 mRNA were identified to have both 1) significantly altered expression and 2) differentially methylated sites. Mitochondrial proteomics revealed decreased expression of ATP Synthase subunits in the exposed group (<i>P</i> ≤ 0.05). The lack of m<sup>6</sup>A modifications to mitochondrial transcripts suggests a mechanism for decreased transcript stability and reduced protein expression due to gestational nano-TiO<sub>2</sub> inhalation exposure.
DOI: 10.6084/m9.figshare.24321640
title: Systematic reappraisal of the diminutive <i>Amphora thumensis</i> and the transfer of <i>Halamphora parathumensis</i> to the genus <i>Amphora</i>

description: Since its description the amphoroid diatom <i>Amphora thumensis</i> has confounded simple taxonomic classification having been assigned to <i>Amphora</i>, <i>Cymbella</i>, and now <i>Halamphora</i>. Taxonomic ambiguity around this taxon stems from its small size and reduced, often contradictory, morphological features. In this investigation, we confirm the taxonomic position of <i>A</i>. <i>thumensis</i> by presenting a four-marker molecular phylogeny for a population collected from a small spring-fed lake in the Rocky Mountains of Colorado, USA. Our phylogenetic hypothesis places <i>A</i>. <i>thumensis</i> not within the genus <i>Halamphora</i>, but within the deep branching lineages of <i>Amphora</i>. We discuss this phylogenetic hypothesis in the context of the morphological and ecological diversity of the genus and evaluate the utility of putative diagnostic characters within <i>Amphora</i>. In light of this new evidence, the valid name <i>Amphora thumensis</i> (Mayer) Krieger is identified as the preferred designation for this taxon. Consequently, we transfer the morphologically similar <i>Halamphora parathumensis</i> to <i>Amphora</i>.
DOI: 10.6084/m9.figshare.24321640.v1
title: Systematic reappraisal of the diminutive <i>Amphora thumensis</i> and the transfer of <i>Halamphora parathumensis</i> to the genus <i>Amphora</i>

description: Since its description the amphoroid diatom <i>Amphora thumensis</i> has confounded simple taxonomic classification having been assigned to <i>Amphora</i>, <i>Cymbella</i>, and now <i>Halamphora</i>. Taxonomic ambiguity around this taxon stems from its small size and reduced, often contradictory, morphological features. In this investigation, we confirm the taxonomic position of <i>A</i>. <i>thumensis</i> by presenting a four-marker molecular phylogeny for a population collected from a small spring-fed lake in the Rocky Mountains of Colorado, USA. Our phylogenetic hypothesis places <i>A</i>. <i>thumensis</i> not within the genus <i>Halamphora</i>, but within the deep branching lineages of <i>Amphora</i>. We discuss this phylogenetic hypothesis in the context of the morphological and ecological diversity of the genus and evaluate the utility of putative diagnostic characters within <i>Amphora</i>. In light of this new evidence, the valid name <i>Amphora thumensis</i> (Mayer) Krieger is identified as the preferred designation for this taxon. Consequently, we transfer the morphologically similar <i>Halamphora parathumensis</i> to <i>Amphora</i>.
DOI: 10.6084/m9.figshare.22101780
title: Computational study on hemodynamic effects of left superior pulmonary vein resection and associated physiological changes in the left atrium after left upper lobectomy

description: Left upper lobectomy (LUL) with left superior pulmonary vein (LSPV) resection alters the left atrium (LA) physiological states and LA hemodynamics associated with thrombosis, although this underlying mechanism is poorly understood. Therefore, we investigated the effects of LSPV resection and associated LA physiological changes on LA hemodynamics using four-dimensional computed tomography image-based computational simulations. Three cases were considered: the LA before and after LUL extracted from computed tomography images and artificial LSPV resection without physiological changes. Comparisons among the three cases demonstrated that physiological changes associated with LSPV resection are the possible factors that affect the LA hemodynamics after LUL.
DOI: 10.6084/m9.figshare.22101780.v1
title: Computational study on hemodynamic effects of left superior pulmonary vein resection and associated physiological changes in the left atrium after left upper lobectomy

description: Left upper lobectomy (LUL) with left superior pulmonary vein (LSPV) resection alters the left atrium (LA) physiological states and LA hemodynamics associated with thrombosis, although this underlying mechanism is poorly understood. Therefore, we investigated the effects of LSPV resection and associated LA physiological changes on LA hemodynamics using four-dimensional computed tomography image-based computational simulations. Three cases were considered: the LA before and after LUL extracted from computed tomography images and artificial LSPV resection without physiological changes. Comparisons among the three cases demonstrated that physiological changes associated with LSPV resection are the possible factors that affect the LA hemodynamics after LUL.
DOI: 10.6084/m9.figshare.24127040
title: How environmental beliefs influence the acceptance of reallocating government budgets to improving coastal water quality: a hybrid choice model

description: In this study, we analyse how beliefs concerning environmental action influence choices in a stated preference survey on coastal water quality and marine habitat areas. Survey respondents were presented with a series of choice tasks featuring improvements in water clarity, reef health, seagrass area and a series of costs in the form of reallocated state budget against a baseline of no new improvements and no change in the budget. The reallocated budget scenario was used as it is likely to be realistic to respondents. Estimates of willingness to reallocate were obtained using a hybrid choice model which included the choice data, attitudinal data regarding support for environmental action and sociodemographic characteristics. Our results suggest that beliefs supporting environmental action influence the willingness to reallocate for attributes that change coastal water quality. A decision support tool for policy analysts was developed to illustrate how public support, as a probability of supporting reallocation, is shaped by beliefs and changes with sociodemographic characteristics.
DOI: 10.6084/m9.figshare.24127040.v1
title: How environmental beliefs influence the acceptance of reallocating government budgets to improving coastal water quality: a hybrid choice model

description: In this study, we analyse how beliefs concerning environmental action influence choices in a stated preference survey on coastal water quality and marine habitat areas. Survey respondents were presented with a series of choice tasks featuring improvements in water clarity, reef health, seagrass area and a series of costs in the form of reallocated state budget against a baseline of no new improvements and no change in the budget. The reallocated budget scenario was used as it is likely to be realistic to respondents. Estimates of willingness to reallocate were obtained using a hybrid choice model which included the choice data, attitudinal data regarding support for environmental action and sociodemographic characteristics. Our results suggest that beliefs supporting environmental action influence the willingness to reallocate for attributes that change coastal water quality. A decision support tool for policy analysts was developed to illustrate how public support, as a probability of supporting reallocation, is shaped by beliefs and changes with sociodemographic characteristics.
DOI: 10.5281/zenodo.10530115
title: Hydric Physiology and Ecology of a Federally Endangered Desert Lizard

description: Data and code for a study of the hydric physiology of free-ranging Blunt-nosed Leopard Lizards (Gambelia sila), published in Conservation Physiology in 2024.
DOI: 10.5281/zenodo.10530116
title: Hydric Physiology and Ecology of a Federally Endangered Desert Lizard

description: Data and code for a study of the hydric physiology of free-ranging Blunt-nosed Leopard Lizards (Gambelia sila), published in Conservation Physiology in 2024.
DOI: 10.5281/zenodo.6363604
title: FAIR Island Community Zenodo Repository Metadata Assessment

description: A FAIR assessment for the FAIR Island Community Zenodo Repository.
DOI: 10.5281/zenodo.10018752
title: Hydration and evaporative water loss of lizards change in response to temperature and humidity acclimation

description: Data and code associated with the 2023 publication in the Journal of Experimental Biology (doi:10.1242/jeb.246459).
DOI: 10.5281/zenodo.10018753
title: Hydration and evaporative water loss of lizards change in response to temperature and humidity acclimation

description: Data and code associated with the 2023 publication in the Journal of Experimental Biology (doi:10.1242/jeb.246459).
DOI: 10.5281/zenodo.10475704
title: Datasets of mineral composition and geochronological result of Barrovian metamorphic sequence rocks in the Ailao Shan massif

description: This file includes the supporting information of the manuscript titled“Thermal and physical properties of Barrovian metamorphic sequence rocks in the Ailao Shan-Red River shear zone, and implications for crustal channel flow”
DOI: 10.5281/zenodo.8123273
title: Datasets of mineral composition and geochronological result of Barrovian metamorphic sequence rocks in the Ailao Shan massif

description: This file includes the supporting information of the manuscript titled“Thermal and physical properties of Barrovian metamorphic sequence rocks in the Ailao Shan-Red River shear zone, and implications for crustal channel flow”
DOI: 10.5281/zenodo.8123274
title: Thermal and physical properties of Barrovian metamorphic sequence rocks in the Ailao Shan-Red River shear zone, and implications for crustal channel flow

description: This file includes the supporting information of the manuscript titled“Thermal and physical properties of Barrovian metamorphic sequence rocks in the Ailao Shan-Red River shear zone, and implications for crustal channel flow”
DOI: 10.5281/zenodo.8123703
title: Thermal and physical properties of Barrovian metamorphic sequence rocks in the Ailao Shan-Red River shear zone, and implications for crustal channel flow

description: This file includes the supporting information of the manuscript titled“Thermal and physical properties of Barrovian metamorphic sequence rocks in the Ailao Shan-Red River shear zone, and implications for crustal channel flow”
DOI: 10.5281/zenodo.8123714
title: Thermal and physical properties of Barrovian metamorphic sequence rocks in the Ailao Shan-Red River shear zone, and implications for crustal channel flow

description: This file includes the supporting information of the manuscript titled“Thermal and physical properties of Barrovian metamorphic sequence rocks in the Ailao Shan-Red River shear zone, and implications for crustal channel flow”
DOI: 10.6084/m9.figshare.25024301
title: Data_Root_phosphatase_activity_is_coordinated_with_the_root_conservation_gradient_across_a_phosphorus_gradient_in_a_lowland_tropical_forest.csv

description: Soil phosphorus (P) is a growth-limiting nutrient in tropical ecosystems, driving diverse P-acquisition strategies among plants. Particularly, mining for inorganic P through phosphomonoesterase (PME) activity is essential, given the substantial proportion of organic P in soils. Yet the relationship between PME activity and other nutrient-acquisition root traits remains unclear. We measured root PME activity and commonly-measured root traits, including root diameter, specific root length (SRL), root tissue density (RTD), and nitrogen concentration ([N]) in 18 co-occurring species across soils with varying P availability to better understand trees response to P supply. Root [N] and RTD were inversely related, and that axis was not clearly related to soil P supply. Both traits, however, correlated positively and negatively to PME activity, which responded strongly to P supply. Conversely, root diameter was inversely related to SRL, but this axis was not related to P supply. This pattern suggests that limiting similarity influenced variation along the diameter-SRL axis, explaining local trait diversity. Meanwhile, variation along the root[N]-RTD axis might best reflect environmental filtering. Overall, P availability indicator traits like PME activity and root hairs only tended to be associated with these axes, highlighting limitations of these axes in describing convergent adaptations at local sites.
DOI: 10.6084/m9.figshare.25024301.v1
title: Data_Root_phosphatase_activity_is_coordinated_with_the_root_conservation_gradient_across_a_phosphorus_gradient_in_a_lowland_tropical_forest.csv

description: Soil phosphorus (P) is a growth-limiting nutrient in tropical ecosystems, driving diverse P-acquisition strategies among plants. Particularly, mining for inorganic P through phosphomonoesterase (PME) activity is essential, given the substantial proportion of organic P in soils. Yet the relationship between PME activity and other nutrient-acquisition root traits remains unclear. We measured root PME activity and commonly-measured root traits, including root diameter, specific root length (SRL), root tissue density (RTD), and nitrogen concentration ([N]) in 18 co-occurring species across soils with varying P availability to better understand trees response to P supply. Root [N] and RTD were inversely related, and that axis was not clearly related to soil P supply. Both traits, however, correlated positively and negatively to PME activity, which responded strongly to P supply. Conversely, root diameter was inversely related to SRL, but this axis was not related to P supply. This pattern suggests that limiting similarity influenced variation along the diameter-SRL axis, explaining local trait diversity. Meanwhile, variation along the root[N]-RTD axis might best reflect environmental filtering. Overall, P availability indicator traits like PME activity and root hairs only tended to be associated with these axes, highlighting limitations of these axes in describing convergent adaptations at local sites.
DOI: 10.5281/zenodo.6902933
title: Cutaneous Evaporative Water Loss in Lizards is Variable across Body Regions and Plastic in Response to Humidity

description: Data and code associated with the 2022 publication in Herpetologica (doi:10.1655/Herpetologica-D-21-00030.1).
DOI: 10.5281/zenodo.6902932
title: Cutaneous Evaporative Water Loss in Lizards is Variable across Body Regions and Plastic in Response to Humidity

description: Data and code associated with the 2022 publication in Herpetologica (doi:10.1655/Herpetologica-D-21-00030.1).
DOI: 10.35090/gatech/73238
title: Microcat, Aquadopp, and ADCP data from the 2020-2022 Labrador Sea eastern boundary mooring array as part of the Overturning in the Subpolar North Atlantic Program (OSNAP)
DOI: 10.5281/zenodo.4016911
title: Anuran accents: Continental-scale citizen science data reveal spatial and temporal patterns of call variability

description: Data and code associated with the 2020 publication in Ecology and Evolution (doi:10.1002/ece3.6833).
DOI: 10.5281/zenodo.4016912
title: Anuran accents: Continental-scale citizen science data reveal spatial and temporal patterns of call variability

description: Data and code associated with the 2020 publication in Ecology and Evolution (doi:10.1002/ece3.6833).
DOI: 10.6073/pasta/c57a98288c0a8195953319593f476662
title: CoRRE Trait Database: A collection of 17 categorical and continuous traits for more than 4000 grassland species worldwide

description: In our changing world, it is critical to understand and predict plant community responses to global change drivers. Plant functional traits promise to be a key predictive tool for many ecosystems, including grasslands, however their use requires both complete plant community and functional trait data. Yet, representation of these data in global databases is incredibly sparse, particularly beyond a handful of most used traits and common species. Here we present the CoRRE Trait Database, spanning 17 traits (9 categorical, 8 continuous) anticipated to predict species’ responses to global change for 4,079 vascular plant species across 173 plant families present in 390 grassland experiments from around the world. The database contains complete categorical trait records for all 4,079 plant species, obtained from a comprehensive literature search. Additionally, the database contains nearly complete coverage (99.97%) of species mean values for continuous traits for a subset of 2,927 plant species, predicted from observed trait data drawn from TRY and a variety of other plant trait databases using Bayesian Probabilistic Matrix Factorization (BHPMF) and multivariate imputation using chained equations (MICE). These data will shed light on mechanisms underlying population, community, and ecosystem responses to global change in grasslands worldwide.
DOI: 10.6084/m9.figshare.24093978
title: Dataset for Fatty Acid Methyl Ester Profiles of Californian Xylella fastidiosa Isolates

description: Raw Fatty Acid Methyl Ester (FAME) profiles for each replicate used to derive FAME profiles for different Xylella fastidiosa isolates that originated in California, USA. Fatty acids are described by their omega numbers (e.g. 10:0, meaning ten carbons in length and no double bonds). Values are percent of total peaks evaluated.
DOI: 10.6084/m9.figshare.24093978.v1
title: Dataset for Fatty Acid Methyl Ester Profiles of Californian Xylella fastidiosa Isolates

description: Raw Fatty Acid Methyl Ester (FAME) profiles for each replicate used to derive FAME profiles for different Xylella fastidiosa isolates that originated in California, USA. Fatty acids are described by their omega numbers (e.g. 10:0, meaning ten carbons in length and no double bonds). Values are percent of total peaks evaluated.
DOI: 10.5281/zenodo.10530157
title: TMKit dataset

description: This is the example dataset that is curated for using the TMKit toolkit (https://github.com/2003100127/tmkit). Please walk it through https://tmkit-guide.herokuapp.com/doc/overview.
DOI: 10.5281/zenodo.10530158
title: TMKit dataset

description: This is the example dataset that is curated for using the TMKit toolkit (https://github.com/2003100127/tmkit). Please walk it through https://tmkit-guide.herokuapp.com/doc/overview.
DOI: 10.6084/m9.figshare.25024454
title: anonymized forms

description: Anonymized form responses
DOI: 10.6084/m9.figshare.25024454.v1
title: anonymized forms

description: Anonymized form responses
DOI: 10.34740/kaggle/dsv/7430503
title: Forex Exchange Rates Since 2004 (Updated Daily)