cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4633636
title: GenISW: Simulated Integrated Sachs-Wolfe Maps

description: Maps of the Integrated Sachs-Wolfe and ancillary data are provided for the following N-body simulations: MICE Grand Challenge Lightcone Simulation <strong>File Structure</strong> <em>MICE_ISW_map_zmin_0.0_zmax_1.4_SBT_normal_nside_256.fits</em><br> Main ISW map for MICE in healpix format at nside=256 for constributions from z = 0 to 1.4 constructed from normal boundary spherical Bessel transforms. <em>MICE_alm_zmin_0.0_zmax_1.4_SBT_normal.txt</em><br> Alms for the above, to generate maps at the desired nside <em>MICE_Full.zip</em><br> ISW maps, alms and theory cls for MICE ISW for contribution from z = 0 to 1.4 <em>MICE_dz_02.zip</em><br> Same as above except these are divided into redshift bins of dz=0.2 <strong>Methods</strong> Spherical Bessel Transform with normal and derivative boundary conditions. Spherical Harmonic Scaling. Francis & Peacock (2010) approximation. <strong>Data Products</strong> ISW maps in healpix format at nside=256 in units of K. ISW alms in units of K provided in ascii format Columns: real, imaginary. To generate HEALPix map with the desired nside: <pre><code class="language-python">import numpy as np import healpy as hp alm_fname = #provide name to alm file nside = #provide desired nside for map data = np.loadtxt(alm_fname, unpack=True) alm = data[0] + 1j*data[1] isw_map = hp.alm2map(alm, nside)</code></pre> Theoretical angular power spectra (Cls, which are provided unitless) with columns: l: spherical harmonic l modes. cl_ii: ISW auto-angular power spectra. cl_id: ISW-density cross-angular power spectra. cl_dd: Density auto-angular power spectra. cl_ii_limber: ISW auto-angular power spectra using the limber approximation. cl_id_limber`: ISW-density cross-angular power spectra using the limber approximation. cl_dd_limber: Density auto-angular power spectra using the limber approximation. Note: ISW maps and alms have already been multiplied by Tcmb = 2.7255. <strong>Citing</strong> Please cite the DOI for the zenodo repository. <strong>Contact</strong> Email: knaidoo@cft.edu.pl
DOI: 10.5281/zenodo.4088697
title: GenISW: Simulated Integrated Sachs-Wolfe Maps

description: Maps of the Integrated Sachs-Wolfe and ancillary data are provided for the following N-body simulations: MICE Grand Challenge Lightcone Simulation <strong>File Structure</strong> <em>MICE_ISW_map_zmin_0.0_zmax_1.4_SBT_normal_nside_256.fits</em><br> Main ISW map for MICE in healpix format at nside=256 for constributions from z = 0 to 1.4 constructed from normal boundary spherical Bessel transforms. <em>MICE_alm_zmin_0.0_zmax_1.4_SBT_normal.txt</em><br> Alms for the above, to generate maps at the desired nside <em>MICE_Full.zip</em><br> ISW maps, alms and theory cls for MICE ISW for contribution from z = 0 to 1.4 <em>MICE_dz_02.zip</em><br> Same as above except these are divided into redshift bins of dz=0.2 <strong>Methods</strong> Spherical Bessel Transform with normal and derivative boundary conditions. Spherical Harmonic Scaling. Francis & Peacock (2010) approximation. <strong>Data Products</strong> ISW maps in healpix format at nside=256 in units of K. ISW alms in units of K provided in ascii format Columns: real, imaginary. To generate HEALPix map with the desired nside: <pre><code class="language-python">import numpy as np import healpy as hp alm_fname = #provide name to alm file nside = #provide desired nside for map data = np.loadtxt(alm_fname, unpack=True) alm = data[0] + 1j*data[1] isw_map = hp.alm2map(alm, nside)</code></pre> Theoretical angular power spectra (Cls, which are provided unitless) with columns: l: spherical harmonic l modes. cl_ii: ISW auto-angular power spectra. cl_id: ISW-density cross-angular power spectra. cl_dd: Density auto-angular power spectra. cl_ii_limber: ISW auto-angular power spectra using the limber approximation. cl_id_limber`: ISW-density cross-angular power spectra using the limber approximation. cl_dd_limber: Density auto-angular power spectra using the limber approximation. Note: ISW maps and alms have already been multiplied by Tcmb = 2.7255. <strong>Citing</strong> Please cite the DOI for the zenodo repository. <strong>Contact</strong> Email: knaidoo@cft.edu.pl
DOI: 10.6084/m9.figshare.14278716.v1
title: Magnetic resonance imaging aspects after surgical repair of knee cartilage: pictorial essay

description: Abstract Radiologists should be familiar with the main techniques of knee cartilage repair and the imaging methods available for its evaluation, in order to optimize the postoperative follow-up of patients. The objective of this study was to present a series of clinical cases seen at our facility, illustrating the main techniques necessary for the repair of knee cartilage, as well as the magnetic resonance imaging techniques used in the postoperative evaluation and the relevant radiological findings.
DOI: 10.25345/c52f8n
title: MassIVE MSV000087087 - GNPS_U19_BEAM-Wake_Forest_Metabolomic_Samples
title: Metabolomics samples from BEAM-Wake_Forest (U19). Sample are human blood plasma, human blood serum, and human stool/fecal material.
DOI: 10.5281/zenodo.4633656
title: A collection of Muak Sa-aak (duai: muak see aak) vocabulary and texts for use in NLP

description: This is a collection of Muak Sa-aak (Muak Sa-aak/ duai: muak see aak) (ISO ukk) vocabulary and texts for use in NLP.
DOI: 10.5281/zenodo.4593584
title: A collection of Muak Sa-aak (duai: muak see aak) vocabulary and texts for use in NLP

description: This is a collection of Muak Sa-aak (Muak Sa-aak/ duai: muak see aak) (ISO ukk) vocabulary and texts for use in NLP.
DOI: 10.6073/pasta/b3b4b1829da44799d7a20eae0b63bf5c
title: WAT01 Konza Prairie long-term irrigation transect study

description: In 1991, an irrigation transect experiment was established near the Konza Prairie HQ to assess the effects of supplemental water on ecological processes in tallgrass prairie. The site is burned annually in the spring. The transect spans upland, hillside and lowland topographic positions with irrigation and sampling points (12) located at 10 m intervals. Adjacent control transects are marked on both sides of the irrigation transect. Irrigation is scheduled according to estimates of actual evapotranspiration and measures of plant water status. In 1992, an additional 4 irrigation sprinklers were added to the transect (2 at each end). In 1993, a second line of sprinklers and control plots was added (#16-31). At the time of peak aboveground biomass (late August to October), six 0.1 m2 quadrats are harvested at each of the 30 sites (no #9 due to rock outcrop) for the irrigated and control/non-irrigated lines. Biomass is separated into live grass, forb and woody. As of 2006, c.dead is no longer separated from live grass. Vegetative species composition was initially measured in 1991 at each site, and continues to be measured at midseason by using a modified Daubenmire canopy coverage technique in a 10 m2 circular plot. At approximately 10 day intervals, predawn and midday plant water potentials are measured in Andropogon gerardii at each site in both irrigated and control transects. Since 1992, reproductive effort of the dominant grasses Andropogon gerardii (ANGE), Sorghastrum nutans (SONU), Schizachyrium scoparius (ANSC) has been assessed in irrigated and control transects by measuring heights (n=9) and densities (n=4) of flowering stalks. In 1993, soil moisture measurements at 15 and 30 cm depths were begun with a Time Domain Reflectometry system. Data set also includes measured natural precipitation and supplemental water added to the site.
DOI: 10.6084/m9.figshare.12874028
title: Dataset used for "Internal migration and mobile communication patterns among pairs with strong ties"

description: This repository contains the data used in our paper "Internal migration and mobile communication patterns among pairs with strong ties".<br>1. monthly_count.csv and monthly_frac.csv<br><br>For each pair used in the dataset ('pair_id') belonging to the train/test set ('set'), we list the unstandardised values of the counts and fractions for each value of <i>t</i>, the number of months from the estimated moving month. The moving month corresponds to <i>t</i>=0, while pre-move months and post-move months are denoted by negative and positive values of <i>t</i>, respectively.<br>2. response_predictors.csv<br>For each pair used in the dataset ('pair_id') belonging to the train/test set ('set'), we list the unstandardised values of the post-move fraction and count and the unstandardised values of the predictors used in the paper.<br>Note the following values for the categorical variables:gender_ego: 1 (female), 2 (male)same_gender: 1 (same gender), 0 (opposite gender)direction_move: -1 (towards alter), +1 (away from alter)count_decay: 1 (post-move count &lt; pre-move count)<br>frac_decay: 1 (post-move fraction &lt; pre-move fraction)<br><br>
DOI: 10.6084/m9.figshare.12874028.v1
title: Dataset used for "Internal migration and mobile communication patterns among pairs with strong ties"

description: This repository contains the data used in our paper "Internal migration and mobile communication patterns among pairs with strong ties".<br>1. monthly_count.csv and monthly_frac.csv<br><br>For each pair used in the dataset ('pair_id') belonging to the train/test set ('set'), we list the unstandardised values of the counts and fractions for each value of <i>t</i>, the number of months from the estimated moving month. The moving month corresponds to <i>t</i>=0, while pre-move months and post-move months are denoted by negative and positive values of <i>t</i>, respectively.<br>2. response_predictors.csv<br>For each pair used in the dataset ('pair_id') belonging to the train/test set ('set'), we list the unstandardised values of the post-move fraction and count and the unstandardised values of the predictors used in the paper.<br>Note the following values for the categorical variables:gender_ego: 1 (female), 2 (male)same_gender: 1 (same gender), 0 (opposite gender)direction_move: -1 (towards alter), +1 (away from alter)count_decay: 1 (post-move count &lt; pre-move count)<br>frac_decay: 1 (post-move fraction &lt; pre-move fraction)<br><br>
DOI: 10.25502/fcht-mc57/d
title: Rwanda Single Diseased Stem Removal  Trials Data

description: Bioversity and IITA saw great benefits for Rwandan farmers and the public agricultural administration should SDSR become an accepted option for the management of BXW. To achieve that, It was proposed to establish 4 on-farm pilot sites that function as combined demonstration plots as well as research platforms for RAB data collection and technical analysis.
DOI: 10.5281/zenodo.4607174
title: Host-adaptation in Legionellales is 2.4 Gya, coincident with eukaryogenesis

description: This dataset contains genomes, proteomes and protein alignments mentioned in Hugoson et al (2021). It has been used to analyze the evolution of host-adaptation in the order Legionellales. The data is organized by dataset type, and then by dataset. The four datasets used here are <strong>Gamma105</strong>, comprising 105 <em>Gammaproteobacteria</em> and 5 outgroups; <strong>Legio93</strong>, comprising 93 <em>Legionellales</em> and 20 outgroups; <strong>Gamma66</strong>, derived from Gamma105 by removing <em>Legionella</em>, <em>Francisella</em>, <em>Fangia</em> and <em>Piscirickettsia</em> genera; <strong>Bacteria72</strong>, comprising 49 Gammaproteobacteria and 23 outgroups. <strong>1_genomes</strong><br> Genomes as downloaded or assembled 1_1_Gamma105 1_2_Legio93 1_3_Gamma66 1_4_Bacteria72 <strong>2_proteomes</strong><br> Proteomes, as annotated by prokka 2_1_Gamma105 2_2_Legio93 2_3_Gamma66 2_4_Bacteria72 <strong>3_alignments</strong> In the first three folders, the following files are found. All sequence and alignment files are in fasta format: *_concatenated.fasta: concatenated alignment, trimmed. *.map: map of the files, tab-separated. The first row is a title row. The three first columns give the organism, the marker and the id (as found in the fasta file) for the protein. *_unaligned: non-aligned sequences for each marker. *_aligned: aligned sequences, for each marker. The prefix gives the software used for the alignment. *_trimmed: aligned, trimmed sequences for each marker. The prefix gives the software used to trim the alignment. <strong>3_1_Gamma105</strong>: Based on the Bact109 set of marker, used in Figure 5 and Supplementary Figures 2, 7 and 12 <strong>3_2_Legio93</strong>: Based on the Bact109 set of marker, used in Figure 1 and Supplementary Figures 1, 2 and 11 <strong>3_3_TB4SS_auto</strong>: Alignment of 12 genes of the T4BSS, automatically detected in all genomes. Used for the tree in Supplementary Figure 5. <strong>3_4_TB4SS_manual</strong>: Alignment of 25 genes of the T4BSS, manually curated by collinearity analysis. Used for the tree in Supplementary Figure 6. <strong>3_5_Gamma66</strong>: Based on the Bact109 set of marker, used for the tree in Supplementary Figure 9. <strong>3_6_Bacteria72</strong>: Based on the Bact109 set of marker, used for the tree in Supplementary Figure 10.
DOI: 10.5281/zenodo.4633361
title: Simulating desorption in vacuum from a porous soil, II: argon and water

description: This dataset contains simulated data of desorption events from a Monte Carlo simulation of desorption and diffusion in 3D sphere packings. The data simulate lunar vacuum conditions.<br> The gas species in these simulations have microphysical parameters consistent with adsorbed argon and water.<br> The output may enable better representations of the desorption process in global exosphere models of solar system bodies.
description: Material from M. Sarantos and S. Tsavachidis, "Lags in desorption of volatiles near lunar sunrise", Geophysical Research Letters, 2021
DOI: 10.6084/m9.figshare.14277013.v1
title: Scolytinae species damaging Carya illinoinensis trees in southern Brazil

description: ABSTRACT This study aims to report two species of Scolytinae that have been damaging Carya illinoinensis trees in southern Brazil. In two Brazilian municipalities, Guarapuava in Paraná State and Pantano Grande in the Rio Grande do Sul State, insects of the Scolytinae family were found damaging pecan trees. Infested tree samples were kept in the laboratory in glass tubes sealed with a voile tissue until the emergence of adults. After the adults’ emergence, the specimens were identified by their morphological characteristics and sent to a taxonomist specialized in Scolytinae family for identification. The species Xyleborus retusus was identified causing damages to pecan trees from Guarapuava while the species Xyleborus ferrugineus was identified in pecan trees from Pantano Grande. Trees injured by these insects displayed similar symptoms in both study areas. In Guarapuava and Pantano Grande, 13 and 10 trees, respectively, died due to stem lesions caused by Xyleborus spp. Thus, this study reports for Brazilian pecan growers the occurrence of Scolytinae species X. retusus and X. ferrugineus damaging C. illinoiensis plants in southern Brazil. It also emphasizes the importance of constant crop monitoring to minimize the risk of pest damage.
DOI: 10.6084/m9.figshare.14276803.v1
title: Analysis of intravitreal injections at the State Public Servant Hospital of São Paulo

description: Abstract Objective: The objective of this work was to generate information about the profile of the patients submitted to Intravitreal Injections (IVIs) and also to evaluate the indications and costs of the procedure. Methods: The study was carried out with own protocols, applied through the analysis of medical records of patients submitted to IVIs at the State Public Servant Hospital of São Paulo from January 2017 to June 2018. Data were analyzed in the form of descriptive study. Results: The results showed that 3181 injections were performed in 1421 eyes in the study period; the main drug injected was Bevacizumab; the main pathology treated was Diabetic Maculopathy; and the cost with these procedures was at least R$ 776,257.56. Most diabetic patients did not have adequate glycemic control. Many patients with AMD had no documented improvement in Visual Acuity. Conclusion: It was concluded that deep analyzes about the indications of IVIs should be performed for the benefit of public servants of São Paulo. The information generated by this study can be used to improve the service through the development of therapeutic protocols, as well as serving as a starting point for new research and actions related to the topic.
DOI: 10.6084/m9.figshare.14276187.v1
title: Efeitos de tamanho da sala no desempenho dos alunos: Evidências usando regressões descontínuas no Brasil

description: Abstract As a result of the inversion of the demographic pyramid and the consequent drop in enrollments in basic education in Brazil, a possible public policy is to limit the number of students per classroom. In this context, the main objective of this study is to evaluate the impact of policies that stipulate a maximum number of students per class on students scores in Mathematics and Portuguese of Prova Brasil, using a sample of 5th and 9th grade students from the municipal and state school chains of São Paulo. Fuzzy regression discontinuity design was used to estimate these impacts, using predicted class size by the Maimonides rule (Angrist & Lavy, 1999) as an instrument for the actual class size. Results show that there is no statistically significant evidence that class size has an impact on student grades. Aiming to bring greater external validity, the effect of interest was estimated for the 5th and 9th grade of Minas Gerais and Santa Catarina, and 5th grade São Paulo, obtaining the same conclusion. The robustness analyzes performed also conclude that there is no effect.
DOI: 10.6084/m9.figshare.14276046.v1
title: Image phenotyping of lettuce germplasm with genetically diverse carotenoid levels

description: ABSTRACT Developing biofortified foods such as lettuce is a frequent goal of breeding programs. One obstacle to the success of these efforts is the high temporal and financial cost of determining leaf constituents. Image phenotyping has been increasingly used in crop breeding, but not in lettuce breeding. Until now, the use of image phenotyping to indirectly select carotenoid-rich lettuce inbred lines has not been reported. Therefore, the goal of this study was to use image phenotyping to select lettuce inbred lines with different carotenoid levels. Twenty-two inbred lettuce lines, resulting from the hybridization of the cultivars Pira 72 and Uberlândia 10000 and six successive selfings were evaluated. ‘Grand Rapids’, ‘UFU-Biofort’ and ‘Uberlândia 10000’ were used as controls. The following variables were evaluated: agronomic potential, apparent genetic diversity and image phenotyping. The data were submitted to the ANOVA F test (p ≤ 0.05) and means compared by the Scott–Knott test (p ≤ 0.05). Genetic divergence was represented by dendrograms constructed by UPGMA and the Tocher optimization method. The relative contribution of characters was assessed to identify the most relevant response variable. The genetic diversity of the evaluated germplasm bank was the greatest regarding soil plant analysis development (SPAD)/carotenoid values. Image phenotyping was successfully used to detect different levels of SPAD/carotenoid levels and could be a useful tool for plant breeding. The results of this study can be used to predict the nutritional values of the carotenoid content in lettuce leaves before commercialization.
DOI: 10.6084/m9.figshare.14261378.v1
title: FOB microscopy - HeLa transfected polyglutamine

description: Fluorescence, optical diffraction tomography and Brillouin microscopy data of HeLa wildtype cells transiently transfected to form GFP-labeled polyglutamine aggregates.
DOI: 10.6084/m9.figshare.6045209.v1
title: Development of frozen yogurt from powdered yogurt of sheep milk

description: ABSTRACT The quest for healthy and unique foods by consumers has raised and encouraged an ever-constant update on skills for professionals who work on the development and research of new products. Sheep milk is a food with high levels of total solids, such as protein and calcium. The current production of sheep dairy products is still low. In this sense, aiming at expanding the market and product range of this raw product, Frozen Yogurt formulations were developed using powdered yogurt of sheep milk, applying an experimental planning 2², with triplicate in the central point. The physicochemical characteristics were evaluated in function of the variables concentration of emulsifier/stabilizer at (0.50, 0.75, and 1.00%) and powder preparation for cream (2.75, 3.00, and 3.25%). Their physicochemical characteristics were also obtained. It was found that the concentration of powder preparation for cream presented a significant positive effect with 95% confidence on protein, lactose, and calcium and a significant negative effect on pH.
DOI: 10.6084/m9.figshare.14292143
title: Green Hydrogen at regional level (NUTS2)

description: Hydrogen production in Europe at regional level (NUTS2) using water electrolysis and electricity from renewable energy resources (RES) such as solar photovoltaic, onshore/offshore wind and hydropower (green hydrogen). Technical potential of RES at regional and national level. Estimations of localised clean hydrogen production and the capacity to replace carbon-intensive hydrogen hubs with ones that use RES-based water electrolysis.
DOI: 10.6084/m9.figshare.14292065
title: Secular trends in breastfeeding in Brazil

description: The objective of this study was to document the secular trend in breastfeeding in Brazil. Data bases from seven national surveys conducted from 1975 to 2008 were reanalyzed. To obtain compatible data from the different surveys, children in the same age group and the same indicators were analyzed, using the same statistical techniques. The median duration of breastfeeding increased from 2.5 to 11.3 months, and the prevalence of exclusive breastfeeding in infants under six months of age increased from 3.1% to 41.0% in the period. The results indicate important challenges in accelerating the rhythm at which this practice in Brazil moves towards meeting international recommendations.
DOI: 10.6084/m9.figshare.14292063
title: Race and stroke mortality in Brazil

description: As stroke mortality rates according to race were not known in Brazil, data on mortality for the year 2010 was collected from the Mortality Information System of the Brazilian Ministry of Health. Cerebrovascular mortality rates adjusted for age (per 100,000) were calculated with a confidence interval of 95% (95%CI) by sex and race/skin color. The differences between races were significant for men with rates of 44.4 (43.5;45.3), 48.2 (47.1;49.3) and 63.3 (60.6;66.6) for white, brown and black, respectively; and for women, with rates of 29.0 (28.3;29.7), 33.7 (32.8;34.6) and 51.0 (48.6;53.4) for white, brown and black, respectively. The burden of stroke mortality is higher among blacks compared to brown and white.