cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5dv1d18h
title: MassIVE MSV000098583 - A simple and versatile cell-free expression method for producing secondary metabolites
title: Secondary metabolites are a major source of natural products with industrially relevant bioactivities. Lysate-based cell-free expression (CFE) is an emerging platform for accelerating the discovery and engineering of these natural products. While Escherichia coli cell extracts are widely used for CFE, Streptomyces extracts are believed to offer a more biochemically compatible environment for natural product synthesis. However, current Streptomyces-based CFE systems remain underdeveloped, with protocols that are either strain-specific or not readily scalable. To address these limitations and enable broader access to cell-free natural product biosynthesis, we present a generalizable and simple set of reaction conditions that support high-yield protein expression (180–230 µg/mL) in lysates derived from Streptomyces venezuelae NRRL B-65422 and Streptomyces lividans TK24. Like Escherichia coli-based systems, these extracts enable iterative and pathway-level biosynthesis, as demonstrated by the production of the polyketide flaviolin and the cyclic dipeptide albonoursin. Notably, the S. lividans lysate outperforms E. coli systems by also supporting the expression and catalytic activity of a (~250 kDa) type I polyketide synthase (T1PKS), producing its corresponding ethyl ketone product, 2-methyl-3-pentanone, without the need for precursor or post-translational modification supplements. To our knowledge, this represents the first demonstration coupling both expression and catalysis of a megasynthase in a Streptomyces-based system, and of a T1PKS in any bacterial extract. By addressing key challenges in the generalizability and scalability of prior Streptomyces CFE, we establish a protocol that enables parallelized evaluation of diverse lysate systems and provide a foundation for high-throughput T1PKS engineering in vitro. The work (proposal:https://doi.org/10.46936/10.25585/60008760) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.
DOI: 10.15468/dl.3p35r8
title: Occurrence Download

description: A dataset containing 709 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Balanus glandula",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 709 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024317-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rvqahd
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Balanus glandula",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024318-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15843899
title: A SET OF GUIDELINES FOR SUPPORTING COLLABORATION IN SOFTWARE TEAM MEETINGS WITH GENERATIVE AI - Supplementary Material

description: This supplementary material compiles the comprehensive set of data and documents collected, analyzed, and evaluated throughout Anielle Severo Lisboa de Andrade's doctoral research. All contents within this material are fully available for public access and review.

Following the University's ethical guidelines and data protection regulations, certain sensitive materials, specifically interview transcripts, member checking, group focal, and expert panel files that contain identifiable participant information, have been excluded from this shared collection.

The files provided herein include, but are not limited to, detailed research phase planning documents, methodological protocols, comprehensive codebooks, models for research dissemination, templates for research-related emails, official ethics committee approval documents, and the semi-structured interview guide used. These valuable resources are presented as supplementary files rather than being appended to the main thesis volume, primarily due to their significant length.
DOI: 10.5281/zenodo.15843900
title: A SET OF GUIDELINES FOR SUPPORTING COLLABORATION IN SOFTWARE TEAM MEETINGS WITH GENERATIVE AI - Supplementary Material

description: This supplementary material compiles the comprehensive set of data and documents collected, analyzed, and evaluated throughout Anielle Severo Lisboa de Andrade's doctoral research. All contents within this material are fully available for public access and review.

Following the University's ethical guidelines and data protection regulations, certain sensitive materials, specifically interview transcripts, member checking, group focal, and expert panel files that contain identifiable participant information, have been excluded from this shared collection.

The files provided herein include, but are not limited to, detailed research phase planning documents, methodological protocols, comprehensive codebooks, models for research dissemination, templates for research-related emails, official ethics committee approval documents, and the semi-structured interview guide used. These valuable resources are presented as supplementary files rather than being appended to the main thesis volume, primarily due to their significant length.
DOI: 10.15468/dl.vvzgnr
title: Occurrence Download

description: A dataset containing 237 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Berberis aquifolium",
 "Country is Luxembourg",
 "HasCoordinate is true"
 ]
}

 The dataset includes 237 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024320-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jfd929
title: Occurrence Download

description: A dataset containing 1028 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Berberis aquifolium",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1028 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024319-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4j968e
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mangifera indica",
 "Country is Angola",
 "HasCoordinate is true"
 ]
}

 The dataset includes 23 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024322-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqdrar
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Equus asinus",
 "Country is Peru",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024321-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dy3bhp
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vitis cordifolia"
 ]
}

 The dataset includes 186 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024323-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fr3e8r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Alcedo atthis)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024324-250717081556266/datasets/export for details.
DOI: 10.15468/dl.gkmwrc
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Alcedo atthis)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024325-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aqb5es
title: Occurrence Download

description: A dataset containing 1869820 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((-100.18 32.62,-84.12 32.62,-84.12 36.97,-100.18 36.97,-100.18 32.62))",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 1869820 records from 366 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024212-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jnc6fr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vallonia excentrica",
 "Country is Mexico",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000364-251009101135966/datasets/export for details.
DOI: 10.3535/q6g-ed3-pta
title: Sabulina tenuifolia subsp. hybrida (Vill.) Dillenb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/td6-9fx-v2j
title: Minuartia hamata (Hausskn. & Bornm.) Mattf.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/m3h-z6l-pbl
title: Milium vernale M.Bieb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/mea-ndl-g8y
title: Sabulina attica subsp. attica

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/mc8-6cm-tys
title: Clinopodium dalmaticum subsp. bulgaricum (Velen.) Raus & Strid

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/97n-t89-y15
title: Milium vernale M.Bieb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/mcr-3v0-nnh
title: Micromeria myrtifolia Boiss. & Hohen.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/dh7-dkz-fkn
title: Micromeria juliana (L.) Benth. ex Rchb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/j8b-n6c-k3v
title: Micromeria juliana (L.) Benth. ex Rchb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/bq5-rg1-pa8
title: Micromeria juliana (L.) Benth. ex Rchb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/k38-1lx-w0a
title: Cherleria baldaccii (Halácsy) A. J. Moore & Dillenb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/jzz-tjl-kv3
title: Sabulina attica subsp. attica

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/qdc-yx6-44j
title: Cherleria baldaccii (Halácsy) A. J. Moore & Dillenb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/02f-7wg-zhn
title: Sabulina attica subsp. attica

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/rk1-ygg-9sg
title: Sabulina attica subsp. attica

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/xph-b10-na1
title: Sabulina attica subsp. attica

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/bgn-kdh-fbq
title: Sabulina attica subsp. attica

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/m6l-3m5-d3z
title: Sabulina attica subsp. attica

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/d53-c0p-bxw
title: Mibora minima (L.) Desv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/f6p-j81-g9t
title: Mibora minima (L.) Desv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/m1l-7e9-94v
title: Mibora minima (L.) Desv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.15468/dl.6eufse
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Casuarina equisetifolia L.",
 "Country is Nauru",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111037-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/rmj-2g5-k2c
title: Milium vernale M.Bieb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/ztq-894-6d4
title: Mibora minima (L.) Desv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/1mq-b6d-fap
title: Mibora minima (L.) Desv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/d0l-fdj-zd6
title: Mibora minima (L.) Desv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/3bs-w4e-kxj
title: Mibora minima (L.) Desv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/zwa-81x-xl2
title: Milium vernale M.Bieb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.21233/nnpq-7128
title: Dry Cave vertebrate fauna dataset

description: Raw data for the Dry Cave vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.3535/hxe-kjk-bbn
title: Sabulina tenuifolia subsp. hybrida (Vill.) Dillenb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/7fa-7ye-st9
title: Sabulina tenuifolia subsp. hybrida (Vill.) Dillenb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/k9k-cs2-swb
title: Sabulina tenuifolia subsp. hybrida (Vill.) Dillenb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/l8c-fld-nzz
title: Minuartia glomerata subsp. velutina (Boiss. & Orph.) Mattf.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/tyv-0rr-s27
title: Sabulina tenuifolia subsp. hybrida (Vill.) Dillenb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/3dm-my6-724
title: Moenchia mantica (L.) Bartl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/jwl-m2n-fxb
title: Moenchia mantica (L.) Bartl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/dj4-j8p-my3
title: Moenchia mantica (L.) Bartl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/nek-rwe-day
title: Moenchia mantica (L.) Bartl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/a00-qvk-vvr
title: Moenchia mantica (L.) Bartl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.18739/a2vh5ck9h
title: Fram Strait Meroplanktonic Larvae 2023-2024

description: In this study, we aimed to understand how meroplanktonic larvae are distributed in the Fram Strait (Arctic Ocean) and what environmental factors drive their community composition. Meroplanktonic larvae of benthic invertebrates are key to the connectivity and persistence of seafloor populations. By studying the distribution and dispersal of larvae, we can better understand the impacts of climate change in a warming Arctic. In the summers of 2023 and 2024, we deployed plankton nets throughout the Fram Strait. Meroplanktonic larvae were sorted from plankton samples, quantified, and identified using integrative taxonomy. Oceanographic parameters were obtained through physical sampling and satellite data. Based on temperature and salinity measurements, we categorized samples as being collected in different water masses. Phytoplankton community composition was used to define four different communities, representing different bloom states. Sea ice cover was quanitifed from satellite imagery. These data allow for reveal how enviornmental factors influence community composition of meroplanktonic larvae in the high Arctic.
DOI: 10.3535/7jb-x8c-qnb
title: Moenchia mantica (L.) Bartl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/zag-fdh-yf3
title: Moenchia mantica (L.) Bartl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.15468/dl.m4z6pk
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Casuarina equisetifolia L.",
 "Country is Myanmar",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111036-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/1ez-bzh-y6g
title: Sabulina tenuifolia subsp. hybrida (Vill.) Dillenb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/faa-cc4-dq3
title: Moenchia mantica (L.) Bartl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/c5m-fhb-3e4
title: Sabulina tenuifolia subsp. hybrida (Vill.) Dillenb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.15468/dl.cvu4v4
title: Occurrence Download

description: A dataset containing 5251 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amanita muscaria (L.) Lam.",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5251 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111035-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/20e-qde-x6a
title: Moenchia mantica (L.) Bartl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/ejt-be0-zpx
title: Moenchia mantica (L.) Bartl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.15468/dl.s3kra4
title: Occurrence Download

description: A dataset containing 1543 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aeschynomene americana L."
 ]
}

 The dataset includes 1543 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111039-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/fgm-24x-ea8
title: Moenchia mantica (L.) Bartl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/w5j-1n4-mcl
title: Moenchia mantica (L.) Bartl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/rmq-h4t-y4l
title: Moenchia mantica (L.) Bartl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/xsz-vsq-qw3
title: Moenchia mantica (L.) Bartl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/1na-q42-vs5
title: Moenchia graeca Boiss. & Heldr.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/rt8-jpa-qf8
title: Moenchia mantica (L.) Bartl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.