cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14450647.v1
title: Additional file 2 of PTEN loss correlates with T cell exclusion across human cancers

description: Additional file 2: Supplementary Figure 1. Association of PTEN genomic alteration with PTEN expression and key pathway activation. Difference of PTEN mRNA expression, PI3K-AKT-mTOR pathway activation(represented by p-AKT [phosphorylated at Thr308 or Ser473], p-mTOR [phosphorylated at Ser2448], and ssGSEA score of PI3K pathway) and STAT3 activation (p-STAT3 [phosphorylated at Tyr705] between tumors with genomic PTEN loss and tumors with genomic Intact PTEN for each tumor types. *p &lt; 0.05; **p &lt; 0.01; ***p &lt; 0.001; ****p &lt; 0.0001; ns, not significant. Supplementary Figure 2. Gene set enrichment analysis (GSEA) of T-cell inflamed signature between tumors with PTEN loss and tumors with Intact PTEN. T-cell inflamed signature was highly enriched in tumors with intact PTEN for multiple cancer types; but for a few other cancer types, T-cell inflamed signature was highly enriched in tumors with PTEN loss. Supplementary Figure 3. Correlation of innate immune population with genomic alteration in PTEN, PIK3CA, PIK3CB. (a) Difference in the infiltration of innate immune cells, including dendritic cells (DC), macrophages and natural killer cells (NK) between tumor with PTEN loss and tumor with Intact PTEN; (b) Difference in the infiltration of innate immune cells (DC, macrophages and NK) between tumor with PIK3CA loss and tumor with wide-type PIK3CA; (c) Difference in the infiltration of innate immune cells (DC, macrophages and NK) between tumor with PIK3CB loss and tumor with wide-type PIK3CB. *p &lt; 0.05; **p &lt; 0.01; ***p &lt; 0.001; ****p &lt; 0.0001; ns, not significant. Supplementary Figure 4. Association of PTEN genomic alteration with expression of immunosuppressive markers. Logarithmic transferred mRNA expression of immunosuppressive genes (FOXP3, IDO1, CCL2, CSF1 and IL6) that had been reported to be associated with PTEN were compared between tumors with genomic PTEN loss and tumors with genomic Intact PTEN for each tumor types. *p &lt; 0.05; **p &lt; 0.01; ***p &lt; 0.001; ****p &lt; 0.0001; ns, not significant. Supplementary Figure 5. Survival impact of PTEN in Pan-cancer. Kaplan-Meier plots of overall survival difference between tumors with PTEN loss and tumors with Intact PTEN for each tumor type
DOI: 10.6084/m9.figshare.14450647
title: Additional file 2 of PTEN loss correlates with T cell exclusion across human cancers

description: Additional file 2: Supplementary Figure 1. Association of PTEN genomic alteration with PTEN expression and key pathway activation. Difference of PTEN mRNA expression, PI3K-AKT-mTOR pathway activation(represented by p-AKT [phosphorylated at Thr308 or Ser473], p-mTOR [phosphorylated at Ser2448], and ssGSEA score of PI3K pathway) and STAT3 activation (p-STAT3 [phosphorylated at Tyr705] between tumors with genomic PTEN loss and tumors with genomic Intact PTEN for each tumor types. *p &lt; 0.05; **p &lt; 0.01; ***p &lt; 0.001; ****p &lt; 0.0001; ns, not significant. Supplementary Figure 2. Gene set enrichment analysis (GSEA) of T-cell inflamed signature between tumors with PTEN loss and tumors with Intact PTEN. T-cell inflamed signature was highly enriched in tumors with intact PTEN for multiple cancer types; but for a few other cancer types, T-cell inflamed signature was highly enriched in tumors with PTEN loss. Supplementary Figure 3. Correlation of innate immune population with genomic alteration in PTEN, PIK3CA, PIK3CB. (a) Difference in the infiltration of innate immune cells, including dendritic cells (DC), macrophages and natural killer cells (NK) between tumor with PTEN loss and tumor with Intact PTEN; (b) Difference in the infiltration of innate immune cells (DC, macrophages and NK) between tumor with PIK3CA loss and tumor with wide-type PIK3CA; (c) Difference in the infiltration of innate immune cells (DC, macrophages and NK) between tumor with PIK3CB loss and tumor with wide-type PIK3CB. *p &lt; 0.05; **p &lt; 0.01; ***p &lt; 0.001; ****p &lt; 0.0001; ns, not significant. Supplementary Figure 4. Association of PTEN genomic alteration with expression of immunosuppressive markers. Logarithmic transferred mRNA expression of immunosuppressive genes (FOXP3, IDO1, CCL2, CSF1 and IL6) that had been reported to be associated with PTEN were compared between tumors with genomic PTEN loss and tumors with genomic Intact PTEN for each tumor types. *p &lt; 0.05; **p &lt; 0.01; ***p &lt; 0.001; ****p &lt; 0.0001; ns, not significant. Supplementary Figure 5. Survival impact of PTEN in Pan-cancer. Kaplan-Meier plots of overall survival difference between tumors with PTEN loss and tumors with Intact PTEN for each tumor type
DOI: 10.6084/m9.figshare.14450689.v1
title: Additional file 2 of Identification of consistent QTL for time to maturation in Virginia-type Peanut (Arachis hypogaea L.)

description: Additional file 2: Table S1. Population genotype data presented by the order of linkage map. Physical positions of markers were based on the tetraploid peanut genome sequence [17]. Table S2. Mean phenotypic values of measured traits over two years of field tests.
DOI: 10.6084/m9.figshare.14450689
title: Additional file 2 of Identification of consistent QTL for time to maturation in Virginia-type Peanut (Arachis hypogaea L.)

description: Additional file 2: Table S1. Population genotype data presented by the order of linkage map. Physical positions of markers were based on the tetraploid peanut genome sequence [17]. Table S2. Mean phenotypic values of measured traits over two years of field tests.
DOI: 10.6084/m9.figshare.14450706.v1
title: Additional file 2 of Cyproheptadine, an epigenetic modifier, exhibits anti-tumor activity by reversing the epigenetic silencing of IRF6 in urothelial carcinoma

description: Additional file 2: Table S2. Genes that are upregulated in BFTC905 cells treated with CPH vs control (DMSO).
DOI: 10.6084/m9.figshare.14450706
title: Additional file 2 of Cyproheptadine, an epigenetic modifier, exhibits anti-tumor activity by reversing the epigenetic silencing of IRF6 in urothelial carcinoma

description: Additional file 2: Table S2. Genes that are upregulated in BFTC905 cells treated with CPH vs control (DMSO).
DOI: 10.6084/m9.figshare.14450721.v1
title: Additional file 4 of Hand grip strength and fatigability: correlation with clinical parameters and diagnostic suitability in ME/CFS

description: Additional file 4. Table S1. Correlations of clinical parameters with HGS and HGS ratios. Pearson (lin) or Spearman (non-lin) correlation coefficients were calculated. Bold: significant correlations with p
DOI: 10.6084/m9.figshare.14450724
title: Additional file 5 of Hand grip strength and fatigability: correlation with clinical parameters and diagnostic suitability in ME/CFS

description: Additional file 5. Table S2. Results of ROC-Analysis for females and males aged 40-59 years. ME/CFS patients (females n=35, males n=21) and HC (females n=18, males n=10). Bold: most distinct parameter.
DOI: 10.6084/m9.figshare.14450724.v1
title: Additional file 5 of Hand grip strength and fatigability: correlation with clinical parameters and diagnostic suitability in ME/CFS

description: Additional file 5. Table S2. Results of ROC-Analysis for females and males aged 40-59 years. ME/CFS patients (females n=35, males n=21) and HC (females n=18, males n=10). Bold: most distinct parameter.
DOI: 10.6084/m9.figshare.14450727
title: Additional file 6 of Hand grip strength and fatigability: correlation with clinical parameters and diagnostic suitability in ME/CFS

description: Additional file 6. Table S3. Raw Data.
DOI: 10.6084/m9.figshare.14450727.v1
title: Additional file 6 of Hand grip strength and fatigability: correlation with clinical parameters and diagnostic suitability in ME/CFS

description: Additional file 6. Table S3. Raw Data.
DOI: 10.6084/m9.figshare.14450721
title: Additional file 4 of Hand grip strength and fatigability: correlation with clinical parameters and diagnostic suitability in ME/CFS

description: Additional file 4. Table S1. Correlations of clinical parameters with HGS and HGS ratios. Pearson (lin) or Spearman (non-lin) correlation coefficients were calculated. Bold: significant correlations with p
DOI: 10.6084/m9.figshare.14450736.v1
title: Additional file 2 of A community-driven resource for genomic epidemiology and antimicrobial resistance prediction of Neisseria gonorrhoeae at Pathogenwatch

description: Additional file 2: Results of the GHRU assembly pipeline on 12,192 public N. gonorrhoeae genomes.
DOI: 10.6084/m9.figshare.14450736
title: Additional file 2 of A community-driven resource for genomic epidemiology and antimicrobial resistance prediction of Neisseria gonorrhoeae at Pathogenwatch

description: Additional file 2: Results of the GHRU assembly pipeline on 12,192 public N. gonorrhoeae genomes.
DOI: 10.6084/m9.figshare.14450797.v1
title: Additional file 6 of Differential expression of starch and sucrose metabolic genes linked to varying biomass yield in Miscanthus hybrids

description: Additional file 6: Table S1. Individual trait scores and Person correlation between traits. Table S2. Traits significantly different (T-test) between the sequenced samples. Table S3. Normalised counts, expression fold-change and P-values for all the genes in roots, stem and leaf tissue between groups of hybrids. Table S4. Normalised counts, expression fold-change and P-values for all the genes in roots, stem and leaf tissue between hybrids and parents. Table S5. Functional annotation, GO and enzyme codes for all the genes in the reference genome. Table S6. Enriched GO terms among DEG between groups of hybrids. Table S7. Enriched GO terms among DEG between hybrids and parents. Table S8. Detailed functional annotation of 88 DEG within the enriched “carbohydrate metabolism” GO term. Table S9. Detailed functional annotation of 29 DEG within the enriched “generation of precursor metabolites and energy” GO term. Table S10. Detailed functional annotation of 72 DEG within the enriched “response to stress” GO term. Table S11. Detailed functional annotation of 31 DEG within the enriched “secondary metabolism” GO term. Table S12. Transcription factor and target genes contained in each regulon in the TRN. Table S13. Enrichment analysis of differential expression genes for each regulon in the TRN. Table S14. Enrichment analysis of GO terms in each regulon for the TRN. Table S15. Annotation of the twenty-eight regulons were enriched with the “carbohydrate metabolism”, “generation of precursor metabolites and energy”, or “secondary metabolism” GO terms; and were also enriched in DEGs, or where the TF was DE. Table S16. Annotation of the target genes in the twenty-eight highlighted regulons.
DOI: 10.6084/m9.figshare.14450797
title: Additional file 6 of Differential expression of starch and sucrose metabolic genes linked to varying biomass yield in Miscanthus hybrids

description: Additional file 6: Table S1. Individual trait scores and Person correlation between traits. Table S2. Traits significantly different (T-test) between the sequenced samples. Table S3. Normalised counts, expression fold-change and P-values for all the genes in roots, stem and leaf tissue between groups of hybrids. Table S4. Normalised counts, expression fold-change and P-values for all the genes in roots, stem and leaf tissue between hybrids and parents. Table S5. Functional annotation, GO and enzyme codes for all the genes in the reference genome. Table S6. Enriched GO terms among DEG between groups of hybrids. Table S7. Enriched GO terms among DEG between hybrids and parents. Table S8. Detailed functional annotation of 88 DEG within the enriched “carbohydrate metabolism” GO term. Table S9. Detailed functional annotation of 29 DEG within the enriched “generation of precursor metabolites and energy” GO term. Table S10. Detailed functional annotation of 72 DEG within the enriched “response to stress” GO term. Table S11. Detailed functional annotation of 31 DEG within the enriched “secondary metabolism” GO term. Table S12. Transcription factor and target genes contained in each regulon in the TRN. Table S13. Enrichment analysis of differential expression genes for each regulon in the TRN. Table S14. Enrichment analysis of GO terms in each regulon for the TRN. Table S15. Annotation of the twenty-eight regulons were enriched with the “carbohydrate metabolism”, “generation of precursor metabolites and energy”, or “secondary metabolism” GO terms; and were also enriched in DEGs, or where the TF was DE. Table S16. Annotation of the target genes in the twenty-eight highlighted regulons.
DOI: 10.6084/m9.figshare.14450799
title: Additional file 2 of Identifying resting locations of a small elusive forest carnivore using a two-stage model accounting for GPS measurement error and hidden behavioral states

description: Additional file 2: Complete R and Stan code for reproducing the statistical analyses in this manuscript.
DOI: 10.6084/m9.figshare.14450799.v1
title: Additional file 2 of Identifying resting locations of a small elusive forest carnivore using a two-stage model accounting for GPS measurement error and hidden behavioral states

description: Additional file 2: Complete R and Stan code for reproducing the statistical analyses in this manuscript.
DOI: 10.6084/m9.figshare.14450808
title: Additional file 2 of Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies

description: Additional file 2:. Table S10. The GISAID identities of 3968 SARS-CoV-2 genome assemblies. Table S11. The GISAID identities of 75,681 SARS-CoV-2 genome assemblies.
DOI: 10.6084/m9.figshare.14450811
title: Additional file 3 of Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies

description: Additional file 3:. Table S12. The mutation landscape of 3968 SARS-CoV-2 genome assemblies. Table S13. The mutation landscape of 75,681 SARS-CoV-2 genome assemblies.
DOI: 10.6084/m9.figshare.14450811.v1
title: Additional file 3 of Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies

description: Additional file 3:. Table S12. The mutation landscape of 3968 SARS-CoV-2 genome assemblies. Table S13. The mutation landscape of 75,681 SARS-CoV-2 genome assemblies.
DOI: 10.6084/m9.figshare.14450814
title: Additional file 4 of Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies

description: Additional file 4:. Table S14. Sequencing coverage metrics.
DOI: 10.6084/m9.figshare.14450814.v1
title: Additional file 4 of Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies

description: Additional file 4:. Table S14. Sequencing coverage metrics.
DOI: 10.6084/m9.figshare.14450808.v1
title: Additional file 2 of Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies

description: Additional file 2:. Table S10. The GISAID identities of 3968 SARS-CoV-2 genome assemblies. Table S11. The GISAID identities of 75,681 SARS-CoV-2 genome assemblies.
DOI: 10.6084/m9.figshare.14450919.v1
title: Additional file 1 of Flame: an open source framework for model development, hosting, and usage in production environments

description: Additional file 1. Model documentation exported in human-readable yaml format that can be edited and imported.
DOI: 10.6084/m9.figshare.14450919
title: Additional file 1 of Flame: an open source framework for model development, hosting, and usage in production environments

description: Additional file 1. Model documentation exported in human-readable yaml format that can be edited and imported.
DOI: 10.6084/m9.figshare.14451054.v1
title: Additional file 2 of Intention-to-treat analysis may be more conservative than per protocol analysis in antibiotic non-inferiority trials: a systematic review

description: Additional file 2.
DOI: 10.6084/m9.figshare.14451054
title: Additional file 2 of Intention-to-treat analysis may be more conservative than per protocol analysis in antibiotic non-inferiority trials: a systematic review

description: Additional file 2.
DOI: 10.25345/c51n6n
title: MassIVE MSV000087241 - Proteome Changes Reveal the Protective Roles of Exogenous CA in Alleviating Cu Toxicity in Brassica napus L.
title: Citric acid (CA), as an organic chelator, plays a vital role in alleviating copper (Cu) stress-mediated oxidative damage, wherein a number of molecular mechanisms alter in plants.
DOI: 10.26188/14265731
title: Melbourne Femur Research Collection

description: The Melbourne Femur Reseach Collection comprises over 600 samples of human femoral bone, 3D imaging scans including QCT, pQCT, microCT, synchrotron microCT, clinical CT; high resolution images of transverse sections of femoral midshaft and several files of research data including mechanical test results and porosity measurements.<br>To find out more about the collection or send an enquiry, please see the links below.
DOI: 10.5517/ccdc.csd.cc25wtgc
title: CCDC 2022733: Experimental Crystal Structure Determination

description: Related Article: Xing Liu, Xiaozhen Wei, Yanqin Miao, Peng Tao, Hua Wang, Bingshe Xu|2021|Tetrahedron|86|132061|doi:10.1016/j.tet.2021.132061
DOI: 10.5517/ccdc.csd.cc265hmj
title: CCDC 2031077: Experimental Crystal Structure Determination

description: Related Article: René S. Rojas, Karina Muñoz-Becerra, Alejandro Toro-Labbé, Angela Mesías-Salazar, Iván Martínez, Antonio Antiñolo, Fernando Carrillo-Hermosilla, Rafael Fernández-Galán, Alberto Ramos, Constantin G. Daniliuc|2020|Inorg.Chim.Acta|518|120217|doi:10.1016/j.ica.2020.120217
DOI: 10.5517/ccdc.csd.cc265hnk
title: CCDC 2031078: Experimental Crystal Structure Determination

description: Related Article: René S. Rojas, Karina Muñoz-Becerra, Alejandro Toro-Labbé, Angela Mesías-Salazar, Iván Martínez, Antonio Antiñolo, Fernando Carrillo-Hermosilla, Rafael Fernández-Galán, Alberto Ramos, Constantin G. Daniliuc|2020|Inorg.Chim.Acta|518|120217|doi:10.1016/j.ica.2020.120217
DOI: 10.5517/ccdc.csd.cc265hpl
title: CCDC 2031079: Experimental Crystal Structure Determination

description: Related Article: René S. Rojas, Karina Muñoz-Becerra, Alejandro Toro-Labbé, Angela Mesías-Salazar, Iván Martínez, Antonio Antiñolo, Fernando Carrillo-Hermosilla, Rafael Fernández-Galán, Alberto Ramos, Constantin G. Daniliuc|2020|Inorg.Chim.Acta|518|120217|doi:10.1016/j.ica.2020.120217
DOI: 10.5517/ccdc.csd.cc265hqm
title: CCDC 2031080: Experimental Crystal Structure Determination

description: Related Article: René S. Rojas, Karina Muñoz-Becerra, Alejandro Toro-Labbé, Angela Mesías-Salazar, Iván Martínez, Antonio Antiñolo, Fernando Carrillo-Hermosilla, Rafael Fernández-Galán, Alberto Ramos, Constantin G. Daniliuc|2020|Inorg.Chim.Acta|518|120217|doi:10.1016/j.ica.2020.120217
DOI: 10.6084/m9.figshare.14451531
title: Row Data_Instrumen Magang-KKNI.xlsx

description: THE DEVELOPMENT OF INTERNSHIP INSTRUMENTS FOR THE IMPLEMENTATION OF KKNI CURRICULUM IN THE FACULTY OF ENGINEERING – UNIMED<br>
DOI: 10.6084/m9.figshare.14451531.v1
title: Row Data_Instrumen Magang-KKNI.xlsx

description: THE DEVELOPMENT OF INTERNSHIP INSTRUMENTS FOR THE IMPLEMENTATION OF KKNI CURRICULUM IN THE FACULTY OF ENGINEERING – UNIMED<br>
DOI: 10.5281/zenodo.4698912
title: Flow behaviour of magnetic steel powder

description: These are the data used in the article "Flow behaviour of magnetic steel powder". This dataset includes: Optical micrographs used to determine the mean size and circularity in each size class after sieving Scale bars are included for two images and may be used to determine the scale of all micrographs included - all images were taken using the same microscope, camera and software. All images are as-recorded. X-ray diffractograms used to determine the fraction of martensite present in each sample Calibration data for the diffraction instrument are included Vibrating sample magnetometry data, used to determine the saturation and remanent magnetisation. Shear cell metrics derived automatically form the shear cell tests Hall flow times, both with and without drying Angle of repose dat Videos of all angle of repose tests Other data can be provided on request.
DOI: 10.6084/m9.figshare.14451681
title: Table 2 Differences between assurance fund and title insurance

description: Differences between the assurance fund and title insurance.
DOI: 10.25345/c5wz4r
title: MassIVE MSV000087242 - GNPS Trichoderma secondary metabolites trial dataset
title: Ethyl acetate culture extract of Trichoderma sp. cultivated in PDB. Untargeted LC-MS/MS analysis. Negative ionization. Trial Run.
DOI: 10.13140/rg.2.2.17917.28641
title: Rommels Rationale for the attack
DOI: 10.6084/m9.figshare.14451792
title: Table 3

description: Land transfers in Malaysia according to states in 2019.
DOI: 10.17632/mh9rpgwjpt.1
title: Data for: Dynamic modeling of postseismic deformation following the 2015 Mw 7.8 Gorkha earthquake, Nepal

description: Cumulative postseismic displacements in the initial 5 years after the 2015 Mw 7.8 Gorkha, Nepal earthquake
DOI: 10.6084/m9.figshare.14451915
title: Row Data_Evaluasi Pembelajaran Daring CIPP.xlsx

description: THE EVALUATION OF IMPLEMENTING ONLINE LEARNING AT UNIMED FACULTY OF ENGINEERING <br>
DOI: 10.6084/m9.figshare.14451915.v1
title: Row Data_Evaluasi Pembelajaran Daring CIPP.xlsx

description: THE EVALUATION OF IMPLEMENTING ONLINE LEARNING AT UNIMED FACULTY OF ENGINEERING <br>
DOI: 10.25646/8138
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.6084/m9.figshare.14451582.v1
title: AustralasiaCRhaplotypesMMSCI5041.fasta

description: Killer whale haplotypes found in Reeves et al. in review. They were generated based on a 434bp fragment of the mtDNA control region.<br>
DOI: 10.3886/e113808v1-84300
title: Replication data for: Do Expert Reviews Affect the Demand for Wine?

description: We examine the demand for wines in Sweden using five years of weekly data on sales, advertising, and expert reviews. The effect of a favorable review peaks in the week after publication with an increase in demand of 6 percent, and the effect remains significant for more than 20 weeks. We find small demand-enhancing effects of neutral reviews and no evidence of important negative effects from unfavorable reviews. Restrictions on the state-owned monopoly retailer and the exogenous timing of a subset of the reviews support a causal interpretation of the effects of reviews on demand. (JEL D12, L66, L81, M31, M37)
DOI: 10.3886/e113808v1-84301
title: Replication data for: Do Expert Reviews Affect the Demand for Wine?

description: We examine the demand for wines in Sweden using five years of weekly data on sales, advertising, and expert reviews. The effect of a favorable review peaks in the week after publication with an increase in demand of 6 percent, and the effect remains significant for more than 20 weeks. We find small demand-enhancing effects of neutral reviews and no evidence of important negative effects from unfavorable reviews. Restrictions on the state-owned monopoly retailer and the exogenous timing of a subset of the reviews support a causal interpretation of the effects of reviews on demand. (JEL D12, L66, L81, M31, M37)