cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.7dlrk5
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belize",
 "TaxonKey is Heteromys gaumeri J.A.Allen & Chapman, 1897"
 ]
}

 The dataset includes 26 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007481-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9tgehj
title: Occurrence Download

description: A dataset containing 1431 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Dacnis berlepschi E.Hartert, 1900"
 ]
}

 The dataset includes 1431 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037619-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.68t3d5
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Ulmus elongata L.K.Fu & C.S.Ding"
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039712-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.89xhne
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Begonia voluptuaria Lanors., Souvann. & Lamxay"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047767-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wpv37g
title: Occurrence Download

description: A dataset containing 5310 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-110.74219 14.60485,-53.78906 14.60485,-53.78906 54.16243,-110.74219 54.16243,-110.74219 14.60485))",
 "TaxonKey is Orconectes Cope, 1872",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5310 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007490-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e7mwfz
title: Occurrence Download

description: A dataset containing 19482 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Eriocheir sinensis H.Milne Edwards, 1853"
 ]
}

 The dataset includes 19482 records from 158 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037635-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kw9e2n
title: Occurrence Download

description: A dataset containing 178 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Ortyxelos meiffrenii (Vieillot, 1819)"
 ]
}

 The dataset includes 178 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054178-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mnla50
title: Occurrence Download

description: A dataset listing the 0 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Year 1000-2019",
 "Geometry POLYGON((25.13672 39.46289,43.78326 11.86735,54.15161 7.9314,98.38257 -15.97453,116.00189 -16.61777,123.97797 -11.30771,144.14063 -10.2832,151.51245 -19.01538,167.87109 -11.86523,187.13837 48.0432,192.30469 61.25977,191.05225 71.43418,159.30725 75.70411,89.36005 82.06131,76.28906 80.06836,59.94141 78.48633,42.26251 70.31853,36.73828 45.61523,25.13672 39.46289))",
 "TaxonKey is Tracheophyta",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 0 records were derived from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007492-190918142434337/datasets/export for details.
DOI: 10.15468/dl.b4n9ge
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Drypetes liberica Quintanar & D.J.Harris"
 ]
}

 The dataset includes 19 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037627-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xfsj2n
title: Occurrence Download

description: A dataset containing 9189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Cardellina rubra (Swainson, 1827)"
 ]
}

 The dataset includes 9189 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007498-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ab6xcf
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Biscutella pseudolyrata A.Vicente, M.Á.Alonso & M.B.Crespo"
 ]
}

 The dataset includes 15 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054168-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y5nwps
title: Occurrence Download

description: A dataset containing 1440 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Theobroma cacao L."
 ]
}

 The dataset includes 1440 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037658-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m3e9ra
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Passer cordofanicus Heuglin, 1871"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000439-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.otn6aa
title: Occurrence Download

description: A dataset containing 1792272 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((121.9482421875 25.944873510406733, 119.92675781249999 24.51380768644785, 119.0478515625 23.711600796260456, 118.95996093749999 23.227885900108273, 120.5419921875 21.521220674851083, 122.03613281249999 21.60296069156007, 121.86035156249999 23.227885900108273, 122.4755859375 25.231445998191283, 122.4755859375 25.86581440526071, 121.9482421875 25.944873510406733))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1792272 records from 277 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009812-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8sddxp
title: Occurrence Download

description: A dataset containing 3912 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vulpia fasciculata (Forssk.) Samp."
 ]
}

 The dataset includes 3912 records from 173 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084562-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p5rahm
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "GadmGid is CHN",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Eucommia Oliv."
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071629-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qujqkj
title: Occurrence Download

description: A dataset containing 49852 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-8.25670 37.03177,4.57534 37.03177,4.57534 42.16239,-8.25670 42.16239,-8.25670 37.03177))",
 "HasCoordinate is true",
 "TaxonKey is Pinus halepensis Mill.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 49852 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008987-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4b3tjx
title: Occurrence Download

description: A dataset containing 187741 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Medicago sativa L."
 ]
}

 The dataset includes 187741 records from 836 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054094-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wvgspj
title: Occurrence Download

description: A dataset containing 63725 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asparagus acutifolius L."
 ]
}

 The dataset includes 63725 records from 387 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174384-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bytgop
title: Occurrence Download

description: A dataset containing 11404735 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Southern African Bird Atlas Project 2"
 ]
}

 The dataset includes 11404735 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008987-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ycwjyz
title: Occurrence Download

description: A dataset containing 407 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bulinus O.F.Müller, 1781, Bulinus Férussac, 1822, Bulinus Broderip, 1828, Bulinus S.Studer, 1820)",
 "HasCoordinate is true",
 "Country is South Africa"
 ]
}

 The dataset includes 407 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058329-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nrhzna
title: Occurrence Download

description: A dataset containing 25002 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canis latrans Say, 1823"
 ]
}

 The dataset includes 25002 records from 154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008411-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qfcev5
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Year 2014-2014",
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Geothlypis philadelphia (A.Wilson, 1810)"
 ]
}

 The dataset includes 182 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008371-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.39ucrc
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Physella Haldeman, 1842)",
 "HasCoordinate is true",
 "Country is South Africa"
 ]
}

 The dataset includes 40 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058330-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1ikocu
title: Occurrence Download

description: A dataset containing 1002 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Deirochelys reticularia (Latreille, 1801)"
 ]
}

 The dataset includes 1002 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008988-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26624314.v1
title: Additional file 29 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 29: Table S4. Integrative mouse gene set found by taking all genes that were differentially expressed between EMT, squamous, and microacinar histological subtypes that also had copy number differences present from the whole genome sequencing data. The rationale behind this is that if the MMTV-Myc histological subtype preferentially represent different human intrinsic breast cancer subtypes, the combination of genomic and transcriptomic data will limit the number of genes used in unsupervised hierarchical clustering to those that matter most.
DOI: 10.6084/m9.figshare.26624320
title: Additional file 31 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 31: Table S6. Data for constructing the Kaplan-Meier plot of MYC amplified and unaltered breast cancer patients by probability of overall survival in months. Includes bounds for 95% confidence intervals, number at risk, and standard error calculations.
DOI: 10.6084/m9.figshare.26624323
title: Additional file 32 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 32: Table S7. Raw data obtained from cBioPortal for all breast cancer patients separated by MYC amplification status. Redundant patient samples have not been removed.
DOI: 10.6084/m9.figshare.26624233
title: Additional file 3 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 3: Human (NP_000213.1) and mouse (NP_001116205.1) KIT protein sequence alignment using Clustal Omega 1.2.4. The percent identity matrix calculated by Clustal 2.1 is shown at the bottom. The percent identity between human and mouse KIT protein is 82.77%.
DOI: 10.6084/m9.figshare.26624335.v1
title: Additional file 36 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 36: Table S11. Raw data obtained from cBioPortal for all breast cancer patients separated by FGFR2 amplification status. Redundant patient samples have not been removed.
DOI: 10.6084/m9.figshare.26624353.v1
title: Additional file 42 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 42: Table S17. Fisher exact test of ERBB2 and MYC amplification in human breast cancer patients. MYC and ERBB2 amplification trend toward co-occurrence.
DOI: 10.6084/m9.figshare.26624302.v1
title: Additional file 26 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 26: Table S1. Estimated integer copy number gain or loss by gene for all 9 tumors that underwent whole genome sequencing.
DOI: 10.6084/m9.figshare.26624311
title: Additional file 28 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 28: Table S3. Gene expression and estimated integer copy number correlation values by gene with location included in the mm10 genome across all EMT, squamous, and microacinar samples. Includes the Kendall rank correlation coefficient and Pearson correlation coefficient values.
DOI: 10.6084/m9.figshare.26624329.v1
title: Additional file 34 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 34: Table S9. Raw data obtained from cBioPortal for all breast cancer patients separated by KRAS amplification/mutation status. Redundant patient samples have not been removed.
DOI: 10.6084/m9.figshare.26624338
title: Additional file 37 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 37: Table S12. List of the 32 most important genes as a subset of PAM50 for distinguishing between intrinsic subtypes of breast cancer as determined through RFECV using an SVM classifier with RBF kernel.
DOI: 10.6084/m9.figshare.26624341
title: Additional file 38 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 38: Table S13. Data for constructing the Kaplan-Meier plot of OBSCN mutated and unaltered breast cancer patients by probability of overall survival in months. Includes bounds for 95% confidence intervals, number at risk, and standard error calculations.
DOI: 10.6084/m9.figshare.26624341.v1
title: Additional file 38 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 38: Table S13. Data for constructing the Kaplan-Meier plot of OBSCN mutated and unaltered breast cancer patients by probability of overall survival in months. Includes bounds for 95% confidence intervals, number at risk, and standard error calculations.
DOI: 10.6084/m9.figshare.26624347
title: Additional file 40 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 40: Table S15. Sample level enrichment table for genes that are often co-mutated with OBSCN. Samples are ordered from highest to lowest for genes with mutations that occur in the altered group (OBSCN mutated group).
DOI: 10.6084/m9.figshare.26624302
title: Additional file 26 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 26: Table S1. Estimated integer copy number gain or loss by gene for all 9 tumors that underwent whole genome sequencing.
DOI: 10.6084/m9.figshare.26624308
title: Additional file 27 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 27: Table S2. ssGSEA values for all available EMT, squamous, and microacinar tumors. Includes test statistics, p-values, and log fold changes between groups.
DOI: 10.6084/m9.figshare.26624350.v1
title: Additional file 41 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 41: Table S16. Human gene homologs and genomic location that correspond to genes contained within the conserved microacinar tumor amplification events on mouse chromosomes 11 and 15.
DOI: 10.6084/m9.figshare.26624308.v1
title: Additional file 27 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 27: Table S2. ssGSEA values for all available EMT, squamous, and microacinar tumors. Includes test statistics, p-values, and log fold changes between groups.
DOI: 10.6084/m9.figshare.26624311.v1
title: Additional file 28 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 28: Table S3. Gene expression and estimated integer copy number correlation values by gene with location included in the mm10 genome across all EMT, squamous, and microacinar samples. Includes the Kendall rank correlation coefficient and Pearson correlation coefficient values.
DOI: 10.6084/m9.figshare.26624317
title: Additional file 30 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 30: Table S5. Contingency table of TCGA breast cancer patient copy number data by select genes available through cBioPortal. An event for each gene is the presence of either a copy number gain or copy number loss. Separate pairwise contingency tables are listed for all possible combinations of genes considered: ERBB2, MYC, COL1A1, KRAS, and FGFR2. Odds ratios and p-values were determined using Fisher’s exact test for each gene combination.
DOI: 10.6084/m9.figshare.26624317.v1
title: Additional file 30 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 30: Table S5. Contingency table of TCGA breast cancer patient copy number data by select genes available through cBioPortal. An event for each gene is the presence of either a copy number gain or copy number loss. Separate pairwise contingency tables are listed for all possible combinations of genes considered: ERBB2, MYC, COL1A1, KRAS, and FGFR2. Odds ratios and p-values were determined using Fisher’s exact test for each gene combination.
DOI: 10.6084/m9.figshare.26624323.v1
title: Additional file 32 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 32: Table S7. Raw data obtained from cBioPortal for all breast cancer patients separated by MYC amplification status. Redundant patient samples have not been removed.
DOI: 10.6084/m9.figshare.26624326.v1
title: Additional file 33 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

description: Additional file 33: Table S8. Data for constructing the Kaplan-Meier plot of KRAS with amplification/activating mutation and unaltered breast cancer patients by probability of overall survival in months. Includes bounds for 95% confidence intervals, number at risk, and standard error calculations.