cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17714204
title: Dataset for article "AFM-Fold: Rapid Reconstruction of Protein Conformations from AFM Images"

description: This repository contains data used in a paper "AFM-Fold: Rapid Reconstruction of Protein Conformations from AFM Images" by Kawai et al. 

 



[flhac_conformations/]: Structural ensembles of the C-terminal domain of FlhA (FlhA_C) generated by different models. 



[alphaflow/]



[aflow_md_3a5i_1.dcd, aflow_md_3a5i_1.pdb]: Structural ensemble of FlhA_C generated by AlphaFlow MD. 

[aflow_pdb_3a5i_1.dcd, aflow_pdb_3a5i_1.pdb]: Structural ensemble of FlhA_C generated by AlphaFlow PDB. 



[bioemu/]



[bioemu_3a5i_1.dcd, bioemu_3a5i_1.pdb]: Structural ensemble of FlhA_C generated by BioEmu. 



[msa_subsampling/]



[msa_subsampling_3a5i.dcd, msa_subsampling_3a5i.pdb]: Structural ensemble of FlhA_C generated by MSA subsampling ( using ColabFold ). 





[guidance_scheduling/]: Results of structure generation under different guidance strength parameters (t_start and y_max). 



[ak/*-*-*/results_*_*.npz]: Structure generation results of Adenylate Kinase (AK) with varied guidance strength hyperparameters. The three numbers in each directory name correspond to the inter-domain distances (ATPbd–Core, Core–AMPbd, AMPbd–ATPbd, in Å). 

[flhac/*-*/results_*_*.npz]: Structure generation results of FlhA_C with varied guidance strength hyperparameters. The two numbers in each directory name correspond to the inter-domain distances (A_CD_2–A_CD_3, A_CD_4–A_CD_1, in Å). 



[noise_robustness/]



[*-*.npz]: Results obtained by varying the noise standard deviation of the training AFM images and the “experimental” images used for structure estimation. 



[real_afm/]



[frame_*.npz]: Estimated 3D structures of FlhA_C from time-series real AFM images. 



[real_afm_histogram.npy]: Histogram of the real AFM image intensity distribution. 

[1ake.pdb]: Chain A of PDB ID: 1AKE. 

[4ake.pdb]: Chain A of PDB ID: 4AKE. 

[3a5i.pdb]: Chain A of PDB ID: 3A5I. 

[ak_train.dcd, ak_train.pdb]: Candidate conformations of Adenylate Kinase used for model training. 

[ak_train.npz]: Evaluation results for the candidate conformations of Adenylate Kinase. 

[flhac_train.dcd, flhac_train.pdb]: Candidate conformations of FlhA_C used for model training. 

[flhac_train.npz]: Evaluation results for the candidate conformations of FlhA_C. 

[ak.pt]: CNN parameters for Adenylate Kinase structural estimation. 

[flhac.pt]: CNN parameters for FlhA_C structural estimation. 

[ak_summary.npz]: Summary of structural estimation results for Adenylate Kinase, trained on noise-free pseudo-AFM images. 

[ak_summary_noisy.npz]: Summary of structural estimation results for Adenylate Kinase, trained on pseudo-AFM images with noise std. dev. = 0.3 nm. 

[ak.dcd, ak.pdb]: Conformations randomly sampled from a 450 ns MD trajectory for validation.
DOI: 10.5281/zenodo.17597489
title: Dataset for article "AFM-Fold: Rapid Reconstruction of Protein Conformations from AFM Images"

description: This repository contains data used in a paper "AFM-Fold: Rapid Reconstruction of Protein Conformations from AFM Images" by Kawai et al. 

 



[flhac_conformations/]: Structural ensembles of the C-terminal domain of FlhA (FlhA_C) generated by different models. 



[alphaflow/]



[aflow_md_3a5i_1.dcd, aflow_md_3a5i_1.pdb]: Structural ensemble of FlhA_C generated by AlphaFlow MD. 

[aflow_pdb_3a5i_1.dcd, aflow_pdb_3a5i_1.pdb]: Structural ensemble of FlhA_C generated by AlphaFlow PDB. 



[bioemu/]



[bioemu_3a5i_1.dcd, bioemu_3a5i_1.pdb]: Structural ensemble of FlhA_C generated by BioEmu. 



[msa_subsampling/]



[msa_subsampling_3a5i.dcd, msa_subsampling_3a5i.pdb]: Structural ensemble of FlhA_C generated by MSA subsampling ( using ColabFold ). 





[guidance_scheduling/]: Results of structure generation under different guidance strength parameters (t_start and y_max). 



[ak/*-*-*/results_*_*.npz]: Structure generation results of Adenylate Kinase (AK) with varied guidance strength hyperparameters. The three numbers in each directory name correspond to the inter-domain distances (ATPbd–Core, Core–AMPbd, AMPbd–ATPbd, in Å). 

[flhac/*-*/results_*_*.npz]: Structure generation results of FlhA_C with varied guidance strength hyperparameters. The two numbers in each directory name correspond to the inter-domain distances (A_CD_2–A_CD_3, A_CD_4–A_CD_1, in Å). 



[noise_robustness/]



[*-*.npz]: Results obtained by varying the noise standard deviation of the training AFM images and the “experimental” images used for structure estimation. 



[real_afm/]



[frame_*.npz]: Estimated 3D structures of FlhA_C from time-series real AFM images. 



[real_afm_histogram.npy]: Histogram of the real AFM image intensity distribution. 

[1ake.pdb]: Chain A of PDB ID: 1AKE. 

[4ake.pdb]: Chain A of PDB ID: 4AKE. 

[3a5i.pdb]: Chain A of PDB ID: 3A5I. 

[ak_train.dcd, ak_train.pdb]: Candidate conformations of Adenylate Kinase used for model training. 

[ak_train.npz]: Evaluation results for the candidate conformations of Adenylate Kinase. 

[flhac_train.dcd, flhac_train.pdb]: Candidate conformations of FlhA_C used for model training. 

[flhac_train.npz]: Evaluation results for the candidate conformations of FlhA_C. 

[ak.pt]: CNN parameters for Adenylate Kinase structural estimation. 

[flhac.pt]: CNN parameters for FlhA_C structural estimation. 

[ak_summary.npz]: Summary of structural estimation results for Adenylate Kinase, trained on noise-free pseudo-AFM images. 

[ak_summary_noisy.npz]: Summary of structural estimation results for Adenylate Kinase, trained on pseudo-AFM images with noise std. dev. = 0.3 nm. 

[ak.dcd, ak.pdb]: Conformations randomly sampled from a 450 ns MD trajectory for validation.
DOI: 10.15468/dl.kdztrn
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Schoenoplectiella supina"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008118-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n8jkjp
title: Occurrence Download

description: A dataset containing 7403 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fishes in MZNA-VERT: freshwater fishes of Hidalgo state (Mexico)"
 ]
}

 The dataset includes 7403 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008119-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mweux3
title: Occurrence Download

description: A dataset containing 48483861 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((150.292923 -35.669067, 150.299972 -35.668659, 150.302938 -35.666479, 150.757173 -35.168364, 150.83331 -35.074793, 152.539325 -32.442075, 152.937777 -31.476062, 153.06445 -31.056941, 153.606056 -28.8424, 153.638314 -28.63676, 153.638314 -28.636, 153.638114 -28.63264, 153.546624 -27.434684, 153.358526 -25.006974, 153.351816 -24.964724, 153.266655 -24.697535, 151.905175 -23.185001, 151.904795 -23.184681, 151.904295 -23.184551, 151.903425 -23.184651, 151.049232 -23.425932, 151.016912 -23.451636, 150.978433 -23.487126, 150.977773 -23.487876, 150.789993 -24.20711, 150.788482 -24.213416, 149.562027 -32.063377, 150.074676 -35.203117, 150.077591 -35.210854, 150.280762 -35.663632, 150.285995 -35.6665, 150.292923 -35.669067))"
 ]
}

 The dataset includes 48483861 records from 1312 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008066-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.extc65
title: Occurrence Download

description: A dataset containing 1513 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bassia scoparia",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)"
 ]
}

 The dataset includes 1513 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008122-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25500/edata.bham.00001252
title: Research data supporting the publication "Bacterial Cell Membrane Models: Choosing the Lipid Composition"
DOI: 10.15468/dl.m6e5pz
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Picea mexicana"
 ]
}

 The dataset includes 25 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008123-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17714502
title: LINF_290016400

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.5281/zenodo.17714501
title: LINF_290016400

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.2thu35
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schweinitziella",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008125-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fnmppz
title: Occurrence Download

description: A dataset containing 1334 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Berteroa incana",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)"
 ]
}

 The dataset includes 1334 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008128-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y6y7je
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Lontra canadensis sonora"
 ]
}

 The dataset includes 14 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008127-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7vmvau
title: Occurrence Download

description: A dataset containing 36515 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxon occurrence data for the FungalRoot database"
 ]
}

 The dataset includes 36515 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008129-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15731403
title: Whole-organism and cellular performance during heat ramp exposure experiments with and without hypercapnia and/or hypoxia on the scallop, Pecten maximus

description: This dataset contains data on filtration rate, routine metabolic rate, haemolymph oxygen partial pressure, intracellular pH, oxygen radical absorbance capacity (ORAC), malondialdehyde (MDA), immunoblotting data for HSP70 and ubiquitin, branched-chain amino acid quantities, activities of caspase-3 and -7 measured during heat ramp experiments of the scallop, Pecten maximus. We studied whole-organism and cellular responses in warming ramps from below to above the species thermal optimum, with and without the additional stressors of hypercapnia (WHc), hypoxia (WHo), and both in combination (DT).

Specimens were collected as wild adults in the estuary of Vigo, Spain (~42°14’46.6“N, 8°44’18.5“W) in autumn 2017 and spring 2018. See manuscript, Götze et al. Combined climate stressors constrain various mechanisms for thermal tolerance in the scallop, Pecten maximus, for methodological details and results interpretation.
DOI: 10.5281/zenodo.15731404
title: Whole-organism and cellular performance during heat ramp exposure experiments with and without hypercapnia and/or hypoxia on the scallop, Pecten maximus

description: This dataset contains data on filtration rate, routine metabolic rate, haemolymph oxygen partial pressure, intracellular pH, oxygen radical absorbance capacity (ORAC), malondialdehyde (MDA), immunoblotting data for HSP70 and ubiquitin, branched-chain amino acid quantities, activities of caspase-3 and -7 measured during heat ramp experiments of the scallop, Pecten maximus. We studied whole-organism and cellular responses in warming ramps from below to above the species thermal optimum, with and without the additional stressors of hypercapnia (WHc), hypoxia (WHo), and both in combination (DT).

Specimens were collected as wild adults in the estuary of Vigo, Spain (~42°14’46.6“N, 8°44’18.5“W) in autumn 2017 and spring 2018. See manuscript, Götze et al. Combined climate stressors constrain various mechanisms for thermal tolerance in the scallop, Pecten maximus, for methodological details and results interpretation.
DOI: 10.15468/dl.zkhpzk
title: Occurrence Download

description: A dataset containing 5132 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Megastylus"
 ]
}

 The dataset includes 5132 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008130-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dtwdqe
title: Occurrence Download

description: A dataset containing 9406 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((15.39283 48.94581,16.30285 48.94581,16.30285 49.32584,15.39283 49.32584,15.39283 48.94581))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 2000-2021"
 ]
}

 The dataset includes 9406 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030533-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uys2uf
title: Occurrence Download

description: A dataset listing the 714 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((3.20763 43.32944,3.18648 43.31739,3.19558 43.2965,3.2154 43.28499,3.24004 43.29329,3.23575 43.31793,3.21513 43.32703,3.20763 43.32944))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 714 records were derived from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030516-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60507/fk2/i2nsy2/8cutav
title: 10.12751_g-node.1rfzbn.zip
DOI: 10.60507/fk2/i2nsy2/itb5jl
title: ZLowCa.mat
DOI: 10.15468/dl.gabsxr
title: Occurrence Download

description: A dataset containing 5706 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "TaxonKey is Valerianella eriocarpa"
 ]
}

 The dataset includes 5706 records from 309 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030536-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60507/fk2/i2nsy2/0ethps
title: DataAll.mat
DOI: 10.60507/fk2/i2nsy2/wfrdvz
title: figS1CF.mat
DOI: 10.60507/fk2/i2nsy2/cqexnf
title: figS6DF.mat
DOI: 10.60507/fk2/i2nsy2/idbbai
title: figS3B_BarChart.mat
DOI: 10.60507/fk2/i2nsy2/ubqx8v
title: figS1AD.mat
DOI: 10.60507/fk2/i2nsy2/3p3uw2
title: figS4B_Heatmap.mat
DOI: 10.60507/fk2/i2nsy2/iaseoo
title: LICENSE
DOI: 10.60507/fk2/i2nsy2/6ksmen
title: figS4EF_LinePlot.mat
DOI: 10.60507/fk2/i2nsy2/0cdiqm
title: figS6CE.mat
DOI: 10.60507/fk2/i2nsy2/qfnkbi
title: ZLowCa.mat
DOI: 10.60507/fk2/i2nsy2/hswosa
title: figS6I.mat
DOI: 10.60507/fk2/i2nsy2/m53rob
title: DataAll.mat
DOI: 10.60507/fk2/i2nsy2/gh8xca
title: figS3C_Calcium.mat
DOI: 10.60507/fk2/i2nsy2/ug25hj
title: Fig1i.mat
DOI: 10.60507/fk2/i2nsy2/l6dpwf
title: figS6H.mat
DOI: 10.60507/fk2/i2nsy2/osfcf8
title: Fig1jk.mat
DOI: 10.60507/fk2/i2nsy2/yujvr2
title: README.md
DOI: 10.60507/fk2/i2nsy2/pyvyrt
title: Fig2AB_LinePlot.mat
DOI: 10.60507/fk2/i2nsy2/g6om26
title: ZRawCa.mat
DOI: 10.60507/fk2/i2nsy2/y0gfsn
title: figS6K.mat
DOI: 10.60507/fk2/i2nsy2/uzdvhf
title: figS3D_Calcium.mat
DOI: 10.60507/fk2/i2nsy2/dllii9
title: Fig2C_LinePlot.mat
DOI: 10.60507/fk2/i2nsy2/bw6bl4
title: figS6J.mat
DOI: 10.60507/fk2/i2nsy2/cfiynv
title: Fig2C_BarChart.mat
DOI: 10.60507/fk2/i2nsy2/jd7gwr
title: datacite.yml
DOI: 10.60507/fk2/i2nsy2/fx04zp
title: Fig2AB_Heatmap.mat
DOI: 10.60507/fk2/i2nsy2/ipxsmr
title: figS6B.mat
DOI: 10.60507/fk2/i2nsy2/xoy3kg
title: figS6G.mat
DOI: 10.60507/fk2/i2nsy2/mfvjvd
title: DataAll.mat
DOI: 10.60507/fk2/i2nsy2/wvwfbs
title: figS6A.mat
DOI: 10.60507/fk2/i2nsy2/bd1nrl
title: Fig2AB_BarChart.mat
DOI: 10.60507/fk2/i2nsy2/abjt3k
title: figS4EF_Heatmap.mat
DOI: 10.60507/fk2/i2nsy2
title: Network state changes in sensory thalamus represent learned outcomes

description: Thalamic brain areas play an important role in adaptive behaviors. Nevertheless, the population dynamics of thalamic relays during learning across sensory modalities remain unknown. Using a cross-modal sensory reward-associative learning paradigm combined with deep brain two-photon calcium imaging of large populations of auditory thalamus (medial geniculate body, MGB) neurons in male mice, we identified that MGB neurons are biased towards reward predictors independent of modality. Additionally, functional classes of MGB neurons aligned with distinct task periods and behavioral outcomes, both dependent and independent of sensory modality. During non-sensory delay periods, MGB ensembles developed coherent neuronal representation as well as distinct co-activity network states reflecting predicted task outcome. These results demonstrate flexible cross-modal ensemble coding in auditory thalamus during adaptive learning and highlight its importance in brain-wide cross-modal computations during complex behavior.
DOI: 10.15468/dl.4jtdqr
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "StateProvince is one of (四川, 四川省)",
 "TaxonKey is Galinsoga quadriradiata"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030537-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d8u6td
title: Occurrence Download

description: A dataset containing 46694 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus canariensis"
 ]
}

 The dataset includes 46694 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030535-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17598494
title: test reward
DOI: 10.5281/zenodo.17598495
title: test reward
DOI: 10.15468/dl.crd72s
title: Occurrence Download

description: A dataset containing 3678 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((102.59822 67.65063,55.43314 69.92365,33.27125 66.79827,25.88394 19.06495,78.44743 23.04272,97.76806 42.64747,102.59822 67.65063))",
 "TaxonKey is Caragana frutex"
 ]
}

 The dataset includes 3678 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030539-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u6n8hk
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kyrgyzstan",
 "TaxonKey is Eremias stummeri"
 ]
}

 The dataset includes 45 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030540-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.92xkav
title: Occurrence Download

description: A dataset containing 36778 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((15.39283 48.94581,16.30285 48.94581,16.30285 49.32584,15.39283 49.32584,15.39283 48.94581))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 2022-2025"
 ]
}

 The dataset includes 36778 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030541-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30529745
title: <b>MorphoNet 2.0: An innovative approach for qualitative assessment and segmentation curation of large-scale 3D time-lapse imaging datasets</b>

description: The MorphoNet_Data repository provides all datasets and resources associated with the <b>MorphoNet 2.0</b> publication. It serves as an open archive supporting the reproducibility and reuse of the study’s results.The repository includes:<b>VIDEOS</b> — Demonstration videos illustrating the use cases of each dataset.<b>DATASETS</b> — Original and curated imaging datasets used in MorphoNet 2.0.<b>MODELS</b> — Pre-trained Cellpose models specifically used for segmentation curation in each dataset.<b>BENCHMARKING_DATASETS </b>— Reference datasets employed for performance evaluation, as detailed in the benchmark documentation and supplementary materials.<b>STANDALONE</b> — stable version (2.2.6-df07ae9) of MorphoNet 2.0 for each operating system <br><br><br><b>Reference</b>: Gallean B., Laurent T., Biasuz K., Clément A., Faraj N., Lemaire P., Faure E. (2025). MorphoNet 2.0: An innovative approach for qualitative assessment and segmentation curation of large-scale 3D time-lapse imaging datasets. eLife, 14: RP106227. https://doi.org/10.7554/eLife.106227.2