cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3959831
title: A plate-mantle convection system in West Pacific revealed by Tertiary ultramafic-mafic volcanic rocks in Southeast China

description: Table S1. Major and trace elements of the Cenozoic ultramafic-mafic rocks in Zhejiang. Table S2. Sr-Nd-Pb isotopic data of the Cenozoic ultramafic-mafic rocks in Zhejiang
DOI: 10.3886/e108683v1
title: Crowding In Natural Scenes

description: The data in this project are of two experiments that investigated the effect of visual crowding in natural scenes. This study is currently under review at Cognition. <br><br>The folders for this project contain the data from two experiments, stimuli, descriptions of the stimuli, and a readme file to interpret the results files.
DOI: 10.6073/pasta/6be2649106046b4e92fde5376b652ee8
title: Climate data for D1 data loggers (CR23X and CR1000), 2000 - ongoing, daily.

description: Climatological data were collected from a Niwot Ridge climate station (D1) throughout the year. From July 5 2000 through October 23 2013, data were recorded using a Campbell Instruments CR23X data logger. Subsequently, data were recorded using a Campbell Instruments CR1000 data logger. Maximum and minimum values are recorded instantaneously, with a sampling interval of 5 seconds. Daily averages and totals were calculated from 17,280 individual measurements. This instrument was programmed to generate both hourly and daily output. Beginning in June 25 2009, 10 minute output was also generated. Daily output generated by the logger ended in 2014.
DOI: 10.5281/zenodo.2583274
title: Patterns of selection on tuatara orthologs

description: PAML analyses of tuatara genome.

File 1 = PAML results

File 2. KEGG and GO analyses on PAML output
description: These data are part of the tuatara genome project, which is supported by Ngatiwai iwi, Allan Wilson Centre, University of Otago, New Zealand Genomics Limited, Illumina, National eScience Infrastructure (NeSI NZ).
DOI: 10.5281/zenodo.2583273
title: Patterns of selection on tuatara orthologs

description: PAML analyses of tuatara genome.

File 1 = PAML results

File 2. KEGG and GO analyses on PAML output
description: These data are part of the tuatara genome project, which is supported by Ngatiwai iwi, Allan Wilson Centre, University of Otago, New Zealand Genomics Limited, Illumina, National eScience Infrastructure (NeSI NZ).
DOI: 10.5517/ccdc.csd.cc1mv6wk
title: CCDC 1514749: Experimental Crystal Structure Determination

description: Related Article: Hui Zhou, Rui Zhang, Hui Zhang, Sen Mu, Xiao-Bing Lu|2019|Cat.Sci.Tech.|9|1457|doi:10.1039/C9CY00062C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1mv6xl
title: CCDC 1514750: Experimental Crystal Structure Determination

description: Related Article: Hui Zhou, Rui Zhang, Hui Zhang, Sen Mu, Xiao-Bing Lu|2019|Cat.Sci.Tech.|9|1457|doi:10.1039/C9CY00062C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1n69jp
title: CCDC 1525402: Experimental Crystal Structure Determination

description: Related Article: Hui Zhou, Rui Zhang, Hui Zhang, Sen Mu, Xiao-Bing Lu|2019|Cat.Sci.Tech.|9|1457|doi:10.1039/C9CY00062C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1n69kq
title: CCDC 1525403: Experimental Crystal Structure Determination

description: Related Article: Hui Zhou, Rui Zhang, Hui Zhang, Sen Mu, Xiao-Bing Lu|2019|Cat.Sci.Tech.|9|1457|doi:10.1039/C9CY00062C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pgnph
title: CCDC 1563227: Experimental Crystal Structure Determination

description: Related Article: Alex R. Petrov, Noa K. Pruß, Andrei V. Churakov, Konstantin A. Rufanov, Jörg Sundermeyer|2019|Z.Anorg.Allg.Chem.|645|679|doi:10.1002/zaac.201800509
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1ndymm
title: CCDC 1531791: Experimental Crystal Structure Determination

description: Related Article: Mahuya Banerjee, Milan Ghosh, Sayantan Pradhan, Jesús Sanmartín Matalobos, Abhinandan Rej, Sumit Kumar Hira, Debasis Das|2019|ACS Appl. Bio Mater.|2|1184|doi:10.1021/acsabm.8b00775
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.2583266
title: VCF files for 100 high coverage baboon genomes from the Southwest National Primate Research Center

description: Catalog of SNP and small indel variation in 100 high coverage (&gt;20X) whole genome sequences from baboons (genus <em>Papio</em>) at the Southwest National Primate Research Center (SNPRC). These files use the Panu_2.0 baboon reference genome. See "Analysis of 100 high coverage genomes from a pedigreed captive baboon colony" by Robinson et al. 2019 for further details.
DOI: 10.5517/ccdc.csd.cc1q6lyg
title: CCDC 1585276: Experimental Crystal Structure Determination

description: Related Article: Bing-Fan Long, Qin Huang, Shu-Long Wang, Yan Mi, Meng-Fan Wang, Ting Xiong, Shu-Cong Zhang, Xian-Hong Yin, Fei-Long Hu|2019|J.Coord.Chem.|72|645|doi:10.1080/00958972.2019.1566537
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.2583265
title: VCF files for 100 high coverage baboon genomes from the Southwest National Primate Research Center

description: Catalog of SNP and small indel variation in 100 high coverage (&gt;20X) whole genome sequences from baboons (genus <em>Papio</em>) at the Southwest National Primate Research Center (SNPRC). These files use the Panu_2.0 baboon reference genome. See "Analysis of 100 high coverage genomes from a pedigreed captive baboon colony" by Robinson et al. 2019 for further details.
DOI: 10.5517/ccdc.csd.cc1q6lzh
title: CCDC 1585277: Experimental Crystal Structure Determination

description: Related Article: Bing-Fan Long, Qin Huang, Shu-Long Wang, Yan Mi, Meng-Fan Wang, Ting Xiong, Shu-Cong Zhang, Xian-Hong Yin, Fei-Long Hu|2019|J.Coord.Chem.|72|645|doi:10.1080/00958972.2019.1566537
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q6m0k
title: CCDC 1585278: Experimental Crystal Structure Determination

description: Related Article: Bing-Fan Long, Qin Huang, Shu-Long Wang, Yan Mi, Meng-Fan Wang, Ting Xiong, Shu-Cong Zhang, Xian-Hong Yin, Fei-Long Hu|2019|J.Coord.Chem.|72|645|doi:10.1080/00958972.2019.1566537
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q6lxf
title: CCDC 1585275: Experimental Crystal Structure Determination

description: Related Article: Bing-Fan Long, Qin Huang, Shu-Long Wang, Yan Mi, Meng-Fan Wang, Ting Xiong, Shu-Cong Zhang, Xian-Hong Yin, Fei-Long Hu|2019|J.Coord.Chem.|72|645|doi:10.1080/00958972.2019.1566537
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q6m1l
title: CCDC 1585279: Experimental Crystal Structure Determination

description: Related Article: Bing-Fan Long, Qin Huang, Shu-Long Wang, Yan Mi, Meng-Fan Wang, Ting Xiong, Shu-Cong Zhang, Xian-Hong Yin, Fei-Long Hu|2019|J.Coord.Chem.|72|645|doi:10.1080/00958972.2019.1566537
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.744867
title: Multitask Human Navigation in VR with Motion Tracking

description: Data from human subjects in virtual reality performing some combination of collecting targets, avoiding obstacles, and following a path. Raw data has been parsed into 300 ms samples for use in machine learning algorithms. The data includes object positions in the virtual environment, human position tracking, and task instructions.
description: Each .mat file is the data from a single subject.

The general pRes (for "parsed results") structure has length 32, one for each of 32 trials. Each trial entry has n samples, where n is the number of 300ms slices the trial is parsed into. Within each trial:

* trialNum = number of current trial (practice trials and calibration rooms are omitted)

* taskNum: task instructions. 1= follow path only, 2 = avoid obstacles & follow path, 3 = collect targets & follow path, 4 = targets, obstacles, & path altogether

* taskName = written form of taskNum

* frameNum = frame within movie

* agentX = current X coord of agent

* agentY = current Y coord of agent (vertical height)

* agentZ = current Z coord of agent

* agentAngle = current agent's orientation (yaw in room coords)

* agentMoveDist = amount that subject moved in this action

* agentMoveAngle = angle that subject moved in this angle (relative to agentAngle)

* targ = struct for targets, include targets positions at each frame, note that once the agent encounter the object, the object will disappear (successful collection)

* path = struct for path segments, way points poisitions

* obst = struct for obstacles,  include obstacle positions at each frame, note that once the agent encounter the object, the object will disappear 

The structs for the 3 object types have the following, where m is the number of objects of that type in that trial

* distList = Distances for each of the objects for each of n samples (n x m)

* angleList = Angles for each of the objects for each of n samples (n x m). Angles are relative to the angle of the subject.

* posX, posY, posZ = X, Y, and Z positions for each of the m objects in the n sampled frames.

If you want to parse the data using Python, an example is at: https://github.com/corgiTrax/Sparse-Reinforcement-Learning/blob/master/human/data/parse.py
DOI: 10.17632/kxzrf9n63c.1
title: Data for: Microencapsulated diets to improve growth and survivorship in juvenile oysters

description: Data for: Microencapsulated diets to improve growth and survivorship in juvenile oysters
DOI: 10.5281/zenodo.2583292
title: Resources for genomic analyses in baboons (genus Papio)

description: Resources for genomic analyses in baboons (genus <em>Papio</em>). See "Analysis of 100 high coverage genomes from a pedigreed captive baboon colony" by Robinson et al. 2019 for further details.

<strong>Panu_2.0_Panu_3.0_chain_files.tar.gz</strong> Chain files for converting coordinates between Panu_2.0 and Panu_3.0. All coordinates in the files below correspond to Panu_2.0, but can be converted to coordinates in the new assembly, Panu_3.0, using the chain files with liftOver (Hinrichs et al. 2006, DOI:10.1093/nar/gkj144).

<strong>baboon_100_highcoverage_SNPRC_sample_info.txt</strong> Sample information: Sample ID, Sequencing ID, Type, Sex, Fped (%), Admixed, Mean coverage (X). The type, sex, inbreeding coefficient (Fped), and admixture status are all based on the SNPRC pedigree.

<strong>baboon_24_olive_founders_phased.vcf.gz</strong> Phased VCF files for 24 olive baboon founders. Phasing was performed with Beagle (Browning and Browning 2007, DOI:10.1086/521987), assuming an effective population size of 40,000 individuals (Boissinot et al. 2014, DOI:10.1002/ajpa.22618). SNPs were filtered to remove singletons and thinned so that no two sites were closer than 10 bp. <strong>baboon_24_olive_founders_phased.vcf.gz.tbi</strong> is the index for the VCF file.

<br>
<strong>baboon_ldhelmet_recombination_maps.tar.gz</strong> Fine-scale recombination maps produced with LDhelmet (Chan et al. 2012, DOI:10.1371/journal.pgen.1003090) based on phased genotypes from 24 olive baboon founders. Results from three block penalties are provided (5, 25, 50).

<strong>baboon_AIMs_33founders_fixed_yellow_olive.txt</strong> List of ancestry informative markers for distinguishing olive and yellow baboon ancestry. These sites represent fixed differences between 7 genetically yellow and 24 genetically olive baboons.

<strong>baboon_plink_ROH.bed</strong> Coordinates of runs of homozygosity in BED format, inferred with PLINK (Chang et al. 2015, DOI:10.1186/s13742-015-0047-8) using the default behavior of the --homozyg function. The following parameters were used to prune SNPs beforehand: --indep-pairwise 50 5 0.5. The columns are: chromosome, start position, end position, sample name.

<strong>baboon_LOF_mutations.txt</strong> List of putative LOF mutations annotated with SnpEff (Cingolani et al. 2012, DOI:10.4161/fly.19695). The following mutation types were included: “stop_gained”, “start_lost”, “stop_lost”, “splice_acceptor_variant”, “splice_donor_variant”.
DOI: 10.5281/zenodo.2583291
title: Resources for genomic analyses in baboons (genus Papio)

description: Resources for genomic analyses in baboons (genus <em>Papio</em>). See "Analysis of 100 high coverage genomes from a pedigreed captive baboon colony" by Robinson et al. 2019 for further details.

<strong>Panu_2.0_Panu_3.0_chain_files.tar.gz</strong> Chain files for converting coordinates between Panu_2.0 and Panu_3.0. All coordinates in the files below correspond to Panu_2.0, but can be converted to coordinates in the new assembly, Panu_3.0, using the chain files with liftOver (Hinrichs et al. 2006, DOI:10.1093/nar/gkj144).

<strong>baboon_100_highcoverage_SNPRC_sample_info.txt</strong> Sample information: Sample ID, Sequencing ID, Type, Sex, Fped (%), Admixed, Mean coverage (X). The type, sex, inbreeding coefficient (Fped), and admixture status are all based on the SNPRC pedigree.

<strong>baboon_24_olive_founders_phased.vcf.gz</strong> Phased VCF files for 24 olive baboon founders. Phasing was performed with Beagle (Browning and Browning 2007, DOI:10.1086/521987), assuming an effective population size of 40,000 individuals (Boissinot et al. 2014, DOI:10.1002/ajpa.22618). SNPs were filtered to remove singletons and thinned so that no two sites were closer than 10 bp. <strong>baboon_24_olive_founders_phased.vcf.gz.tbi</strong> is the index for the VCF file.

<br>
<strong>baboon_ldhelmet_recombination_maps.tar.gz</strong> Fine-scale recombination maps produced with LDhelmet (Chan et al. 2012, DOI:10.1371/journal.pgen.1003090) based on phased genotypes from 24 olive baboon founders. Results from three block penalties are provided (5, 25, 50).

<strong>baboon_AIMs_33founders_fixed_yellow_olive.txt</strong> List of ancestry informative markers for distinguishing olive and yellow baboon ancestry. These sites represent fixed differences between 7 genetically yellow and 24 genetically olive baboons.

<strong>baboon_plink_ROH.bed</strong> Coordinates of runs of homozygosity in BED format, inferred with PLINK (Chang et al. 2015, DOI:10.1186/s13742-015-0047-8) using the default behavior of the --homozyg function. The following parameters were used to prune SNPs beforehand: --indep-pairwise 50 5 0.5. The columns are: chromosome, start position, end position, sample name.

<strong>baboon_LOF_mutations.txt</strong> List of putative LOF mutations annotated with SnpEff (Cingolani et al. 2012, DOI:10.4161/fly.19695). The following mutation types were included: “stop_gained”, “start_lost”, “stop_lost”, “splice_acceptor_variant”, “splice_donor_variant”.
DOI: 10.26182/5f211156f0512
title: Conservative versus Interventional Treatment for Spontaneous Pneumothorax
DOI: 10.17632/x3k467kn97.1
title: Data for: Biosecurity practices associated with influenza A virus seroprevalence in sows from southern Brazilian breeding herds

description: Data from a cross-sectional study carried out in 404 sows from 21 herds. The aim of this study was assess the effect of biosecurity practices on Influenza A virus (IAV) seroprevalence. The spreadsheet contains results of an ELISA to detect antibodies against influenza and hemagglutination inhibition assay (HI) only in ELISA positive samples (H1N1pdm09, H1N2 and H3N2), and data on exposure to IAV and two covariates ("N_sows" and "Parity_order").
DOI: 10.17632/x3k467kn97.2
title: Data for: Biosecurity practices associated with influenza A virus seroprevalence in sows from southern Brazilian breeding herds

description: Data from a cross-sectional study carried out in 404 sows from 21 herds. The aim of this study was assess the effect of biosecurity practices on Influenza A virus (IAV) seroprevalence. The spreadsheet contains results of an ELISA to detect antibodies against influenza and hemagglutination inhibition assay (HI) only in ELISA positive samples (H1N1pdm09, H1N2 and H3N2), and data on exposure to IAV and two covariates ("N_sows" and "Parity_order").
DOI: 10.25919/5c7ddde9720af
title: Parkes observations for project P455 semester 2018OCTS_05

description: This project is to continue timing and profile studies of the first double-pulsar system, a unique laboratory for gravitational physics. Recent results, including the first measurements of higher-order light-propagation effects and of the relativistic deformation of the orbit, highlight the importance of a long term observational campaign for this remarkable system. The main aims of this proposal are to provide the strongest tests to date for general relativity and to measure for the first time the moment-of-inertia of a neutron star. Additionally, we will determine the system geometry and map the pulsar beams via geodetic precession. Whenever possible, we will exploit the high sensitivity of the new UWL receiver.
DOI: 10.5517/ccdc.csd.cc20kf01
title: CCDC 1863782: Experimental Crystal Structure Determination

description: Related Article: Jinxiu Xu, Linfeng Hu, Haipeng Hu, Shulin Ge, Xiaohua Liu, Xiaoming Feng|2019|Org.Lett.|21|1632|doi:10.1021/acs.orglett.9b00168
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc214jj8
title: CCDC 1881189: Experimental Crystal Structure Determination

description: Related Article: Anindita Goswami, Mousumi Garai, Kumar Biradha|2019|Cryst.Growth Des.|19|2175|doi:10.1021/acs.cgd.8b01786
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc214jlb
title: CCDC 1881191: Experimental Crystal Structure Determination

description: Related Article: Anindita Goswami, Mousumi Garai, Kumar Biradha|2019|Cryst.Growth Des.|19|2175|doi:10.1021/acs.cgd.8b01786
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc215r00
title: CCDC 1882351: Experimental Crystal Structure Determination

description: Related Article: Muhammad Farooq Ibad, Axel Schulz, Alexander Villinger|2019|Organometallics|38|1445|doi:10.1021/acs.organomet.8b00873
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc215r11
title: CCDC 1882352: Experimental Crystal Structure Determination

description: Related Article: Muhammad Farooq Ibad, Axel Schulz, Alexander Villinger|2019|Organometallics|38|1445|doi:10.1021/acs.organomet.8b00873
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc215r22
title: CCDC 1882353: Experimental Crystal Structure Determination

description: Related Article: Muhammad Farooq Ibad, Axel Schulz, Alexander Villinger|2019|Organometallics|38|1445|doi:10.1021/acs.organomet.8b00873
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.