cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/1wk-qe2-zmh
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s9l-yt0-77p
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dkh-x4w-n82
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6s2-byh-23e
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8nx-915-p8p
title: †Belemnitida

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1rp-zsh-nga
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4za-d0h-f6p
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/scb-znx-ykz
title: †Entolium Meek, 1865

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zme-ym4-7q0
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vf6-axt-3y1
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w9l-c2l-tsv
title: Insecta

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xjr-eqe-8e0
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7d8-jj6-vwq
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hm3-7vt-l1k
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bnk-7nh-1xe
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mpc-51n-kwp
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gl5-qk1-qb7
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bg6-kqa-rcy
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xq8-fg5-bs8
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2jm-40q-zdx
title: †Tarbellastraea Alloiteau, 1952

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rwp-4qs-kas
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kmg-17d-v2k
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/krs-tkg-l7l
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wg5-9p7-kph
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d3r-hqf-9qr
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vxh-anh-rba
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/da6-jnk-cl7
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lc2-ep6-x3n
title: Pseudobelus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/77s-fg0-xrb
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fvj-wy1-m3z
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dd3-20y-8cq
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hm4-fqf-0xy
title: Hibolithes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fvd-bsm-q7v
title: Leiostyla R. T. Lowe, 1852

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3vw-664-3q5
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8x0-rc6-q2v
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j4z-a2l-pl8
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q0w-qc9-mma
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s0l-qdx-0y3
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z41-gaj-51n
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.26m5u4
title: Occurrence Download

description: A dataset containing 1217563 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thalasseus maximus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-180 -90, 180 -90, 180 90, -180 90, -180 -90))"
 ]
}

 The dataset includes 1217563 records from 233 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012089-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/r5b-x7n-jrv
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r5r-lsp-vj6
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dza-nct-32z
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/svg-4gq-6pr
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3jg-qc8-mwq
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8w3-aap-7fj
title: Corbula Bruguière, 1797

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kh6-8e4-nl6
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s3f-sl8-m1n
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/chx-m8n-awf
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dmk-5h3-vg1
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gp3-p6y-vaz
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fsf-vj0-7et
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r1m-n84-jq4
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/md6-akk-j23
title: Insecta

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9vs-0t5-839
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gpx-s83-n74
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h3h-0f0-mhb
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/th8-s67-pnc
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1ze-7sq-ceb
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f9f-4ly-kcp
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e8l-mfn-tka
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n26-cvg-b1d
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/42x-5ch-dyx
title: Belemnites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j9p-n3s-eas
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bk0-t0r-z8d
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9dn-6x9-et7
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jxg-qbn-kzy
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jev-c6n-7hr
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n51-j14-pr8
title: Cervus elaphus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dvf-gs0-tpt
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6jx-4qy-f4b
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g6q-da2-61w
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.wqdxwd
title: Occurrence Download

description: A dataset containing 5783 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Alysicarpus vaginalis, Alysicarpus vaginalis, Alysicarpus vaginalis)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5783 records from 235 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002182-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.marcfy
title: Occurrence Download

description: A dataset containing 231 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gambusia regani",
 "HasCoordinate is true"
 ]
}

 The dataset includes 231 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002180-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28585943
title: Parallel elevational replacement of hosts and parasites in a highly susceptible songbird genus

description: Wiley et al., 2025 (in prep) Parallel elevational replacement of hosts and parasites in a highly susceptible songbird genus.In this study, we use pectoral tissues and whole blood samples of three closely related, elevational replacement species of vireo to characterize infection dynamics of avian haemosporidians across their summer breeding sites in the American Southwest. We asked: we (1) compared parasite prevalence and infection intensity among host species, including the first parasite survey for regionally vulnerable Gray Vireos; (2) characterized haemosporidian haplotypes and host specificity; and (3) tested the extent to which community composition was linked to elevational zones and/or their associated host species and habitats.Data are archived on FigShare: https://doi.org/10.6084/m9.figshare.28585943DATASET All birds were sampled during summer months (May–August) spanning the years 1995–2019 across 27 unique sites in New Mexico and a single site in Utah, under appropriate federal, state, and local permits. Majority of samples were accompanied by vouchered specimens that were archived at the Museum of Southwestern Biology (MSB), University of New Mexico (UNM), except in the case of gray vireos that were released after sample collection. Samples used in this study represent 248 wild birds of three closely related vireo species (Bell’s vireo: n = 20, gray vireo: n = 170, and plumbeous vireo: n = 58). We screened samples via nested PCR amplification of the cytochrome b region for Haemoproteus and Plasmodium parasites and positive infections were quantified via microscopy following the protocol described in Valkiūnas (2005). Parasitemia represents the % of parasites counted across 10,000 red blood cells screened.We identified and compared haplotypes to published records stored in the public databases GenBank (National Center for Biotechnology Information, US National Library of Medicine) and MalAvi (Bensch et al., 2009). Haplotypes that differed by one or more base pairs (~0.2% sequence divergence) from published sequences on GenBank or MalAvi were considered novel and named following MalAvi conventions. All sequences are uploaded to GenBank under [Accession nos. PV295634-PV29583].Additionally, we documented aspects of sampling locality (i.e. latitude, longitude, elevation), and environmental factors known to impact pathogen prevalence and distribution (i.e. WORLDCLIM 19 bioclimatic variables to do with temperature and precipitation).Analysis code is available on GitHub: https://github.com/dlfwiley/Vireo-Malaria-Project. Majority of data, except in the case of gray vireos released after sample collection, are linked to vouchered host and parasite specimens, housed at the Museum of Southwestern Biology (MSB) at the University of New Mexico, USA. Specimen records are accessible in the Artcos database (https://arctos.database.museum/).
DOI: 10.6084/m9.figshare.28585943.v11
title: Parallel elevational replacement of hosts and parasites in a highly susceptible songbird genus

description: Wiley et al., 2025 (in prep) Parallel elevational replacement of hosts and parasites in a highly susceptible songbird genus.In this study, we use pectoral tissues and whole blood samples of three closely related, elevational replacement species of vireo to characterize infection dynamics of avian haemosporidians across their summer breeding sites in the American Southwest. We asked: we (1) compared parasite prevalence and infection intensity among host species, including the first parasite survey for regionally vulnerable Gray Vireos; (2) characterized haemosporidian haplotypes and host specificity; and (3) tested the extent to which community composition was linked to elevational zones and/or their associated host species and habitats.Data are archived on FigShare: https://doi.org/10.6084/m9.figshare.28585943DATASET All birds were sampled during summer months (May–August) spanning the years 1995–2019 across 27 unique sites in New Mexico and a single site in Utah, under appropriate federal, state, and local permits. Majority of samples were accompanied by vouchered specimens that were archived at the Museum of Southwestern Biology (MSB), University of New Mexico (UNM), except in the case of gray vireos that were released after sample collection. Samples used in this study represent 248 wild birds of three closely related vireo species (Bell’s vireo: n = 20, gray vireo: n = 170, and plumbeous vireo: n = 58). We screened samples via nested PCR amplification of the cytochrome b region for Haemoproteus and Plasmodium parasites and positive infections were quantified via microscopy following the protocol described in Valkiūnas (2005). Parasitemia represents the % of parasites counted across 10,000 red blood cells screened.We identified and compared haplotypes to published records stored in the public databases GenBank (National Center for Biotechnology Information, US National Library of Medicine) and MalAvi (Bensch et al., 2009). Haplotypes that differed by one or more base pairs (~0.2% sequence divergence) from published sequences on GenBank or MalAvi were considered novel and named following MalAvi conventions. All sequences are uploaded to GenBank under [Accession nos. PV295634-PV29583].Additionally, we documented aspects of sampling locality (i.e. latitude, longitude, elevation), and environmental factors known to impact pathogen prevalence and distribution (i.e. WORLDCLIM 19 bioclimatic variables to do with temperature and precipitation).Analysis code is available on GitHub: https://github.com/dlfwiley/Vireo-Malaria-Project. Majority of data, except in the case of gray vireos released after sample collection, are linked to vouchered host and parasite specimens, housed at the Museum of Southwestern Biology (MSB) at the University of New Mexico, USA. Specimen records are accessible in the Artcos database (https://arctos.database.museum/).
DOI: 10.6084/m9.figshare.28585943.v10
title: Haemosporidian diversity dramatically differs among closely related, highly susceptible songbird species

description: Wiley et al., 2025 (in prep) Haemosporidian diversity dramatically differs among closely related, highly susceptible songbird species.In this study, we use pectoral tissues and whole blood samples of three closely related, elevational replacement species of vireo to characterize infection dynamics of avian haemosporidians across their summer breeding sites in the American Southwest. We asked: What is the distribution, prevalence, and pathogen loads (parasitemia) experienced across these closely related species (Bell’s vireo: n = 20, gray vireo: n = 170, and plumbeous vireo: n = 58) during their breeding season in the southwestern U.S.? And what factors (i.e. host traits: species; environmental factors: temperature, precipitation; geographic features: latitude, elevation) vary with infection status and parasitemia?Data are archived on FigShare: https://doi.org/10.6084/m9.figshare.28585943DATASET All birds were sampled during summer months (May–August) spanning the years 1995–2019 across 27 unique sites in New Mexico and a single site in Utah, under appropriate federal, state, and local permits. Majority of samples were accompanied by vouchered specimens that were archived at the Museum of Southwestern Biology (MSB), University of New Mexico (UNM), except in the case of gray vireos that were released after sample collection. Samples used in this study represent 248 wild birds of three closely related vireo species (Bell’s vireo: n = 20, gray vireo: n = 170, and plumbeous vireo: n = 58). We screened samples via nested PCR amplification of the cytochrome b region for Haemoproteus and Plasmodium parasites and positive infections were quantified via microscopy following the protocol described in Valkiūnas (2005). Parasitemia represents the % of parasites counted across 10,000 red blood cells screened.We identified and compared haplotypes to published records stored in the public databases GenBank (National Center for Biotechnology Information, US National Library of Medicine) and MalAvi (Bensch et al., 2009). Haplotypes that differed by one or more base pairs (~0.2% sequence divergence) from published sequences on GenBank or MalAvi were considered novel and named following MalAvi conventions. All sequences are uploaded to GenBank and MalAvi under [Accession nos. PV295634-PV29583 & [Accession Number TBD].Additionally, we documented aspects of sampling locality (i.e. latitude, longitude, elevation), and environmental factors known to impact pathogen prevalence and distribution (i.e. WORLDCLIM 19 bioclimatic variables to do with temperature and precipitation).Analysis code is available on GitHub: https://github.com/dlfwiley/Vireo-Malaria-Project. Majority of data, except in the case of gray vireos released after sample collection, are linked to vouchered host and parasite specimens, housed at the Museum of Southwestern Biology (MSB) at the University of New Mexico, USA. Specimen records are accessible in the Artcos database (https://arctos.database.museum/).
DOI: 10.15468/dl.wz3bnn
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erythrina megistophylla"
 ]
}

 The dataset includes 137 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009100-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ytf8kg
title: Occurrence Download

description: A dataset containing 745 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Comastoma pulmonarium"
 ]
}

 The dataset includes 745 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009101-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.474g4m
title: Occurrence Download

description: A dataset containing 48366 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elaeagnus umbellata"
 ]
}

 The dataset includes 48366 records from 430 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009099-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kh23pp
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AEL6488"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009103-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5pz4fx
title: Occurrence Download

description: A dataset containing 589 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carum carvi",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 589 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009104-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.