cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5008799
title: 24-shell diffusion MRI data

description: 24-shell diffusion MRI used in <em>Huynh, K.M., Xu, T., Wu, Y., Wang, X., Chen, G., Wu, H., Thung, K.H., Lin, W., Shen, D. and Yap, P.T., 2020. Probing tissue microarchitecture of the baby brain via spherical mean spectrum imaging. IEEE Transactions on Medical Imaging, 39(11), pp.3607-3618.</em>
description: {"references": ["Huynh, K.M., Xu, T., Wu, Y., Wang, X., Chen, G., Wu, H., Thung, K.H., Lin, W., Shen, D. and Yap, P.T., 2020. Probing tissue microarchitecture of the baby brain via spherical mean spectrum imaging. IEEE Transactions on Medical Imaging, 39(11), pp.3607-3618."]}
DOI: 10.5281/zenodo.5009955
title: Appendix 2 Data for CD013157

description: Appendix 2 Data for the Cochrane review: "Nutritional supplementation for non‐alcohol‐related fatty liver disease: a network meta‐analysis" (CD013157)
DOI: 10.5281/zenodo.4533763
title: Appendix 2 Data for CD013157

description: Appendix 2 Data for the Cochrane review: "Nutritional supplementation for non‐alcohol‐related fatty liver disease: a network meta‐analysis" (CD013157)
DOI: 10.5281/zenodo.5010153
title: Genetic associations of the non-MHC region with systemic sclerosis in a Han Chinese population

description: Systemic sclerosis (SSc) is a complex autoimmune disease with unknown etiology and genetic factors contribute significantly to its pathogenesis. Several studies have identified multiple SSc-susceptible genes while the majority of them were discovered mainly in Caucasians. Recent studies have revealed significant genetic differences between different ethnicities, illustrating the importance of cross-ethnicity validation of candidate SNPs in SSc patients other than Caucasians. In this study, we recruited 1,059 SSc patients and 1,951 matched controls to validate the associations of those reported non-MHC polymorphisms in a Han Chinese population. We searched for the SNPs associated with SSc in the studies published from 2004 to 2019 through Google Scholar and PubMed with the keywords “systemic sclerosis” and “genetics”. In total, 101 SNPs were remained for validation.
DOI: 10.5281/zenodo.5010152
title: Genetic associations of the non-MHC region with systemic sclerosis in a Han Chinese population

description: Systemic sclerosis (SSc) is a complex autoimmune disease with unknown etiology and genetic factors contribute significantly to its pathogenesis. Several studies have identified multiple SSc-susceptible genes while the majority of them were discovered mainly in Caucasians. Recent studies have revealed significant genetic differences between different ethnicities, illustrating the importance of cross-ethnicity validation of candidate SNPs in SSc patients other than Caucasians. In this study, we recruited 1,059 SSc patients and 1,951 matched controls to validate the associations of those reported non-MHC polymorphisms in a Han Chinese population. We searched for the SNPs associated with SSc in the studies published from 2004 to 2019 through Google Scholar and PubMed with the keywords “systemic sclerosis” and “genetics”. In total, 101 SNPs were remained for validation.
DOI: 10.6084/m9.figshare.12471461.v13
title: Knight et al. The Clostridioides difficile species problem: global phylogenomic analysis uncovers three ancient, toxigenic, genomospecies. bioRxiv 2020.09.21.307223; doi: https://doi.org/10.1101/2020.09.21.307223

description: 1. Supplementary File 1 (Summary data; MLST, pangenome, taxonomy, GWAS, toxins)<br> 2. Supplementary File 2 (Global MLST tree file, manuscript Figure 2) <br><br> 3. Supplementary File 3 (BEAST tree file, manuscript Figure 4)<br> 4. Supplementary File 4 (BactDating tree file, manuscript Figure 4)
DOI: 10.5281/zenodo.5008894
title: 150 stacks for autofocus testing applications

description: This dataset includes 150 stacks of images meant to be a testing resource for autofocus applications. The staks were taken over the z axis of the samples, being the best approximation to a sweep of all the possible fields of view in a sample. The images have a resolution of 1388x1040 pixels, and were taken from four different tissue samples (adipose, intestine, kidney, and stomach). For each tissue sample we used two magnifications, 5x and 10x, and each magnification was applied with two bit depths, 8 bits and 16 bits, resulting in a total of 16 categories. Each category contains 10 stacks, except for adipose tissue 10x 8 bits and 16 bits, which contain 5 stacks each.This results in a total of 150 stacks
DOI: 10.5281/zenodo.5008893
title: 150 stacks for autofocus testing applications

description: This dataset includes 150 stacks of images meant to be a testing resource for autofocus applications. The staks were taken over the z axis of the samples, being the best approximation to a sweep of all the possible fields of view in a sample. The images have a resolution of 1388x1040 pixels, and were taken from four different tissue samples (adipose, intestine, kidney, and stomach). For each tissue sample we used two magnifications, 5x and 10x, and each magnification was applied with two bit depths, 8 bits and 16 bits, resulting in a total of 16 categories. Each category contains 10 stacks, except for adipose tissue 10x 8 bits and 16 bits, which contain 5 stacks each.This results in a total of 150 stacks
DOI: 10.5281/zenodo.5007367
title: BAM reference data: SEM raw data for the Particles Size Distribution of Al-coated titania nanoparticles (JRCNM62001a and JRCNM62002a)

description: The SEM images are given in the TIF format. For further information please look at: - Radnik, J. Kersting, R., Hagenhoff, B., Bennet, F., Ciornii, D.; Nymark, P., Grafström R. and Hodoroaba, V.- D. <em>Nanomaterials </em><strong>2021</strong>, <em>11</em>, 639. https://doi.org/10.3390/nano11030639, and - Vasile-Dan Hodoroaba. (2021). BAM reference data: EDS raw data of Al-coated titania nanoparticles (JRCNM62001a and JRCNM62002a) [Data set]. Zenodo. http://doi.org/10.5281/zenodo.4986420 - Radnik, Jörg. (2021). BAM reference data: XPS raw data of Al-coated titania nanoparticles (JRCNM62001a and JRCNM62002a) [Data set]. Nanomaterials. Zenodo. http://doi.org/10.5281/zenodo.4986068 Measurement conditions: In the present work, a SEM of type Supra 40 (ZEISS, Oberkochen, Germany) with a Schottky field emitter and an InLens secondary electron detector was used at a 5 kV beam acceleration voltage.
DOI: 10.5281/zenodo.5007366
title: BAM reference data: SEM raw data for the Particles Size Distribution of Al-coated titania nanoparticles (JRCNM62001a and JRCNM62002a)

description: The SEM images are given in the TIF format. For further information please look at: - Radnik, J. Kersting, R., Hagenhoff, B., Bennet, F., Ciornii, D.; Nymark, P., Grafström R. and Hodoroaba, V.- D. <em>Nanomaterials </em><strong>2021</strong>, <em>11</em>, 639. https://doi.org/10.3390/nano11030639, and - Vasile-Dan Hodoroaba. (2021). BAM reference data: EDS raw data of Al-coated titania nanoparticles (JRCNM62001a and JRCNM62002a) [Data set]. Zenodo. http://doi.org/10.5281/zenodo.4986420 - Radnik, Jörg. (2021). BAM reference data: XPS raw data of Al-coated titania nanoparticles (JRCNM62001a and JRCNM62002a) [Data set]. Nanomaterials. Zenodo. http://doi.org/10.5281/zenodo.4986068 Measurement conditions: In the present work, a SEM of type Supra 40 (ZEISS, Oberkochen, Germany) with a Schottky field emitter and an InLens secondary electron detector was used at a 5 kV beam acceleration voltage.
DOI: 10.6084/m9.figshare.14494602
title: Dataset S1_MAGs_Prokka_ORFs_ORIGINAL_SAMPLE

description: Contains 18 files that represent MAGs reconstructed from the original enrichment experiment using a human fecal sample. Each MAG file contains predicted genes (amino acid sequences) as well as annotated gene function.<br>
DOI: 10.6084/m9.figshare.14494536
title: Dataset S2_MAGs_Prokka_ORFs_ADDITIONAL_SAMPLES

description: Contains fasta files that represent MAGs reconstructed from enrichment experiments using 20 additional human fecal samples (SXX). Each MAG file contains predicted genes (amino acid sequences) as well as annotated gene function.<br>
DOI: 10.6084/m9.figshare.14494677
title: Dataset S3_MAGs_Prokka_ORFs_MICE_SAMPLES

description: Contains fasta files that represent MAGs reconstructed from enrichment experiments using 2 mouse fecal samples (M737 and M1741). Each MAG file contains predicted genes (amino acid sequences) as well as annotated gene function.
DOI: 10.6084/m9.figshare.14494683
title: Dataset S4_MAGs_Prokka_ORFs_ONT

description: Contains 2 fasta files that represent circular genomes reconstructed from a second enrichment experiment using the original human fecal sample. The sample was sequenced using Oxford Nanopore Technology. Each file contains predicted genes (amino acid sequences) as well as annotated gene function.<br>
DOI: 10.6084/m9.figshare.14494689
title: Dataset S5_MAGs_CAZymes

description: Contains CAZyme annotations for each MAG reconstructed from the enrichment using the original sample<br>
DOI: 10.5281/zenodo.4899405
title: Bias-corrected CMIP5 CESM projections over India dynamically downscaled to 10 km resolution by WRF

description: Bias-corrected CMIP5 CESM projections over India dynamically downscaled to 10 km resolution by WRF Domain: WRF fine grid d03 369x369 points at 10 km grid spacing Data format: MATLAB Funded by NMCG Project: “High-resolution climate scenarios for basin-scale water resource management applications” TE-16015/2/2019-O/o ED(Tech) NMCG/201 dt 07.03.2019
DOI: 10.5281/zenodo.4899404
title: Bias-corrected CMIP5 CESM projections over India dynamically downscaled to 10 km resolution by WRF

description: Bias-corrected CMIP5 CESM projections over India dynamically downscaled to 10 km resolution by WRF Domain: WRF fine grid d03 369x369 points at 10 km grid spacing Data format: MATLAB Funded by NMCG Project: “High-resolution climate scenarios for basin-scale water resource management applications” TE-16015/2/2019-O/o ED(Tech) NMCG/201 dt 07.03.2019
DOI: 10.5281/zenodo.4793503
title: Processes Driving Exchange at Cape Hatteras (PEACH) current- and pressure-sensor equipped inverted-echo-sounder (CPIES) processed datasets

description: These are the hourly (P#.mat) and lowpass filtered (P#lp.mat) files from the five current- and pressure- sensor equipped inverted echo sounders (CPIESs) deployed as part of the PEACH program. A description of the processing and details about the experiment can be found at: Andres, M.. (2020). Processes Driving Exchange at Cape Hatteras (PEACH) PIESs and AP Technical Report – Part 1. Zenodo. http://doi.org/10.5281/zenodo.4793402
description: Funded by the US National Science Foundation grant number OCE-1558521.
DOI: 10.26302/sshade/experiment_sm_20210422_90
title: Vis-NIR reflectance spectroscopy of the meteorite Murchison with varying incidence and emergence angles

description: 0.35 to 2.5µm reflectance spectroscopy of a crushed sample of the meteorite Murchison with grain size &lt;90$\mu$m observed under varying geometries: incidence angle at 0°, 15°, 30°, 45°, and 60°; emergence angle from -60° to 60° by 15° steps.
DOI: 10.6084/m9.figshare.14821252.v1
title: Additional file 15 of Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics

description: Additional file 14.
DOI: 10.6084/m9.figshare.14821249.v1
title: Additional file 14 of Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics

description: Additional file 13.
DOI: 10.6084/m9.figshare.14821246.v1
title: Additional file 13 of Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics

description: Additional file 12.
DOI: 10.6084/m9.figshare.14821243.v1
title: Additional file 12 of Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics

description: Additional file 11.
DOI: 10.6084/m9.figshare.14821240.v1
title: Additional file 11 of Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics

description: Additional file 10.
DOI: 10.25345/c5wn85
title: MassIVE MSV000087677 - NAT10 and DDX21 nucleolar proteins interact with RNase H1
title: RNase H1-dependent phosphorothioate oligonucleotides (PS-ASOs) have been developed to treat various diseases through the specific degradation of target RNAs. Though many factors or features of RNA and PS-ASOs have been demonstrated to affect the antisense activity of PS-ASOs, little is known regarding the roles of RNase H1-associated proteins in PS-ASO performance. Hela cells were transfected with BioID2 fused RNase H1 plasmids for 36 hrs, Biotin was added to the media, for an additional 16 hrs. The cells were harvested by trypsin digestion, and the nuclear lysate, was pulled down with Neutravidin resin, and after stringent wash, the complex samples were analyzed for nanoLC-MS/MS which was conducted by ALPHALYSE company.
DOI: 10.6084/m9.figshare.14821207.v1
title: Additional file 3 of A scoping review of Q-methodology in healthcare research

description: Additional file 3. Full list of studies included in the review and details of data items charted.
DOI: 10.6084/m9.figshare.14821205.v1
title: Additional file 9 of Genomic epidemiology of methicillin-resistant and -susceptible Staphylococcus aureus from bloodstream infections

description: Additional file 9: Table S5. Recombination parameters inferred by mcorr for each of CC5 and CC8
DOI: 10.6084/m9.figshare.14821199.v1
title: Additional file 7 of Genomic epidemiology of methicillin-resistant and -susceptible Staphylococcus aureus from bloodstream infections

description: Additional file 7: Table S4. Distribution of virulence genes identified using VirulenceFinder and the VFDB
DOI: 10.6084/m9.figshare.14821193.v1
title: Additional file 5 of Genomic epidemiology of methicillin-resistant and -susceptible Staphylococcus aureus from bloodstream infections

description: Additional file 5: Table S3. Distribution of horizontally acquired antimicrobial resistance genes identified using ResFinder
DOI: 10.6084/m9.figshare.14821184.v1
title: Additional file 3 of Genomic epidemiology of methicillin-resistant and -susceptible Staphylococcus aureus from bloodstream infections

description: Additional file 3: Table S2. Distribution of genes in the S. aureus pan-genome identified using Roary
DOI: 10.6084/m9.figshare.14821178.v1
title: Additional file 1 of Genomic epidemiology of methicillin-resistant and -susceptible Staphylococcus aureus from bloodstream infections

description: Additional file 1: Table S1. Genome assembly, MLST, accession numbers and associated metadata of 323 S. aureus isolates
DOI: 10.6084/m9.figshare.14821112.v1
title: Additional file 1 of Hemophagocytic lymphohistiocytosis during pregnancy: a review of the literature in epidemiology, pathogenesis, diagnosis and treatment

description: Additional file 1. Data extracted from literatures.
DOI: 10.6084/m9.figshare.14821076.v1
title: Additional file 8 of Soil, senescence and exudate utilisation: characterisation of the Paragon var. spring bread wheat root microbiome

description: Additional file 8: Supplementary Table 17. Bacterial community composition data.
DOI: 10.6084/m9.figshare.14821046.v1
title: Additional file 5 of SPARK-X: non-parametric modeling enables scalable and robust detection of spatial expression patterns for large spatial transcriptomic studies

description: Additional file 5: Supplementary Table 7. Enrichment analysis of SE genes for the human ovarian cancer Visium data.
DOI: 10.6084/m9.figshare.14821043.v1
title: Additional file 4 of SPARK-X: non-parametric modeling enables scalable and robust detection of spatial expression patterns for large spatial transcriptomic studies

description: Additional file 4: Supplementary Table 6. Enrichment analysis of SE genes for the mouse olfactory bulb HDST data.
DOI: 10.6084/m9.figshare.14821040.v1
title: Additional file 3 of SPARK-X: non-parametric modeling enables scalable and robust detection of spatial expression patterns for large spatial transcriptomic studies

description: Additional file 3: Supplementary Table 5. Enrichment analysis of SE genes for the mouse cerebellum Slide-seqV2 data.
DOI: 10.6084/m9.figshare.14821037.v1
title: Additional file 2 of SPARK-X: non-parametric modeling enables scalable and robust detection of spatial expression patterns for large spatial transcriptomic studies

description: Additional file 2: Supplementary Table 4. Enrichment analysis of SE genes for the mouse cerebellum Slide-seq data.
DOI: 10.6084/m9.figshare.14821007.v1
title: Additional file 1 of Integrated multi-omics analyses on patient-derived CRC organoids highlight altered molecular pathways in colorectal cancer progression involving PTEN

description: Additional file 1.
DOI: 10.34808/jndw-jn23
title: PULSE and ECG measurement from the hand with elbows resting on the table top - Woman 28 age

description: The data set presents the measurements of the pulse and the ECG signal from the hand made with the use of a proprietary measuring system based on the AD8232 chip, a set of green diode and a phototransistor made on the STM32 microcontroller. Thanks to such a constructed device, it is possible to measure the ECG signal in a non-standard way - from the hand in combination with pulse detection. The results show the ECG signal and the pulse for the concise positioning of the hands and forearms in relation to the body and in relation to the measuring device. With the help of the presented results, it is possible to determine or test the best possible hand layout in order to record data in which individual anatomical features are eliminated as well as possible. Additionally, the integration of two measuring systems illustrates the mutual interaction of two measuring systems.
Measurement scenarios:  elbows resting on the table top
Born: september 1992
DOI: 10.6084/m9.figshare.14820958.v1
title: Additional file 1 of The digestive tract as an essential organ for water acquisition in marine teleosts: lessons from euryhaline eels

description: Additional file 1: Supplementary Table 1. Primer sequences for quantitative real time PCR
DOI: 10.6084/m9.figshare.14820956.v1
title: Additional file 2 of Genetic correlation and causal relationships between cardio-metabolic traits and lung function impairment

description: Additional file2: Table S3. contains a detailed overview of all variants used as instruments in this study including chromosomal position, nearest gene, allele frequencies and P value of association to all tested cardiometabolic traits. Table S4. Linkage disequilibrium between SNPs subdivided into traits and chromosomes. Table S6. Sensitivity analysis including effect estimates, standard errors and P-values for associations between all exposures and all outcomes for all applied MR techniques. Table S7. Multivariable MR including effect estimates, standard errors from Multivariable MR. Table S10. Effect attenuation gives differences in effect size estimates when adding an additional predictor to multivariable MR analysis. Table S11. Sex stratified analysis including effect estimates, standard errors and P-values.
DOI: 10.6084/m9.figshare.14820890.v1
title: Additional file 1 of The household financial burden of non-communicable diseases in low- and middle-income countries: a systematic review

description: Additional file 1: List of included articles and study characteristics; cost ingredient checklist. This table includes all articles that met the inclusion criteria and were selected for review. The table also shows study characteristics as well as the cost ingredient checklist, based on which homogeneity among studies was assessed.
DOI: 10.34808/wjss-gh20
title: The AFM micrographs of vanadium oxide thin films obtained at 100°C

description: The DataSet contains the atomic force microscope images of the surface of vanadium oxide thin films. The thin films were obtained by the sol-gel method.  The information about sol synthesis is described in the Journal of Nanomaterials. The sol was deposited on quartz glass and silicon substrate and vanadium thin films were obtained by annealing as-prepared films at 100°C  under synthetic air. 
A Nanosurf Easyscan 2 AFM atomic force microscopy was used to examine the morphology of thin films.
DOI: 10.34808/aqy2-4s96
title: The AFM micrographs of vanadium oxides thin films obtained at 150°C

description: The DataSet contains the atomic force microscope images of the surface of vanadium oxide thin films. The thin films were obtained by the sol-gel method.  The information about sol synthesis is described in the Journal of Nanomaterials. The sol was deposited on quartz glass and silicon substrate and vanadium thin films were obtained by annealing as-prepared films at 150°C  under synthetic air.  
A Nanosurf Easyscan 2 AFM atomic force microscopy was used to examine the morphology of thin films.
DOI: 10.34808/d7j3-2732
title: The AFM micrographs of vanadium oxides thin films obtained at 200°C

description: The DataSet contains the atomic force microscope images of the surface of vanadium oxide thin films. The thin films were obtained by the sol-gel method.  The information about sol synthesis is described in the Journal of Nanomaterials. The sol was deposited on quartz glass and silicon substrate and vanadium thin films were obtained by annealing as-prepared films at 200°C  under synthetic air. 
A Nanosurf Easyscan 2 AFM atomic force microscopy was used to examine the morphology of thin films.
DOI: 10.34808/3dx3-e588
title: The AFM micrographs of of vanadium oxides thin films obtained at 300°C

description: The DataSet contains the atomic force microscope images of the surface of vanadium oxide thin films. The thin films were obtained by the sol-gel method.  The information about sol synthesis is described in the Journal of Nanomaterials. The sol was deposited on quartz glass and silicon substrate and vanadium thin films were obtained by annealing as-prepared films at 300°C  under synthetic air. 
A Nanosurf Easyscan 2 AFM atomic force microscopy was used to examine the morphology of thin films.
DOI: 10.34808/fe8b-5919
title: The AFM micrographs of vanadium oxides thin films obtained at 600°C

description: The DataSet contains the atomic force microscope images of the surface of vanadium oxide thin films. The thin films were obtained by the sol-gel method.  The information about sol synthesis is described in the Journal of Nanomaterials. The sol was deposited on quartz glass and silicon substrate and vanadium thin films were obtained by annealing as-prepared films at 600°C  under synthetic air. 
A Nanosurf Easyscan 2 AFM atomic force microscopy was used to examine the morphology of thin films.
DOI: 10.34808/pn5h-4476
title: The AFM micrographs of vanadium oxides thin films obtained at 800°C

description: The DataSet contains the atomic force microscope images of the surface of vanadium oxide thin films. The thin films were obtained by the sol-gel method.  The information about sol synthesis is described in the Journal of Nanomaterials. The sol was deposited on a silicon substrate and vanadium thin films were obtained by annealing as-prepared films at 800°C  under synthetic air. 
A Nanosurf Easyscan 2 AFM atomic force microscopy was used to examine the morphology of thin films.
DOI: 10.6084/m9.figshare.14820782.v1
title: Additional file 9 of Transcriptomic analysis of primate placentas and novel rhesus trophoblast cell lines informs investigations of human placentation

description: Additional file 9. DE results of human versus rhesus bulk placenta (190 HPGs).
DOI: 10.6084/m9.figshare.14820779.v1
title: Additional file 8 of Transcriptomic analysis of primate placentas and novel rhesus trophoblast cell lines informs investigations of human placentation

description: Additional file 8. TPM-based human versus rhesus placenta DEGs.