cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3115258
title: Chapter 2 Data File

description: Data file associated with Chapter 2 (Dominance analysis).
DOI: 10.6084/m9.figshare.3115261
title: Chapter 3 Data File

description: Chapter 3 data (ROC curves)
DOI: 10.6084/m9.figshare.3115267.v1
title: Chapter 5 Data File

description: Chapter 5 data (modeling dichotomous outcomes)
DOI: 10.6084/m9.figshare.3115261.v1
title: Chapter 3 Data File

description: Chapter 3 data (ROC curves)
DOI: 10.6084/m9.figshare.3115252.v1
title: Chapter 1 Data File

description: This is the data file associated with Chapter 1 (Quantile Regression)
DOI: 10.6084/m9.figshare.3115120
title: Data from CCAB computerized design fluency test

description: Tests of design fluency (DF) assess a participant’s ability to generate geometric patterns and are thought to measure executive functions involving the non-dominant frontal lobe. Here, we describe the properties of a rapidly administered computerized design-fluency (C-DF) test that measures response times and is automatically scored. In Experiment 1, we found that the number of unique patterns produced over 90 s by 180 control participants (ages 18 to 82 years) correlated with age, education, and daily computer-use. Each line in the continuous 4-line patterns required approximately 1.0 s to draw. The rate of pattern production and the incidence of repeated patterns both increased over the 90 s test. Unique pattern z-scores (corrected for age and computer-use) correlated with the results of other neuropsychological tests performed on the same day. Experiment 2 analyzed C-DF test-retest reliability in 55 participants in three test sessions at weekly intervals and found high z-score intraclass correlation coefficients (ICC = 0.79). Z-scores in the first session did not differ significantly from those of Experiment 1, but performance improved significantly over repeated tests. Experiment 3 investigated the performance of Experiment 2 participants when instructed to simulate malingering. Z-scores were significantly reduced and pattern repetitions increased, but there was considerable overlap with the performance of the control population. Experiment 4 examined performance in veteran patients tested more than one year after traumatic brain injury (TBI). Patients with mild TBI performed within the normal range, but patients with severe TBI showed reduced z-scores. The C-DF test reliably measures visuospatial pattern generation ability and reveals performance deficits in patients with severe TBI.
DOI: 10.6084/m9.figshare.3115156
title: Common Workflow Language, v1.0

description: <pre>The Common Workflow Language (CWL) is an informal, multi-vendor working group consisting of various organizations and individuals that have an interest in portability of data analysis workflows. Our goal is to create specifications that enable data scientists to describe analysis tools and workflows that are powerful, easy to use, portable, and support reproducibility.</pre><pre>CWL builds on technologies such as JSON-LD and Avro for data modeling and Docker for portable runtime environments. CWL is designed to express workflows for data-intensive science, such as Bioinformatics, Medical Imaging, Chemistry, Physics, and Astronomy.</pre><pre>This is v1.0 of the CWL tool and workflow specification, released on 2016-07-08.</pre><pre>The specification, in HTML format, is in the draft-3/docs folder.</pre>
DOI: 10.6084/m9.figshare.3115258.v2
title: Chapter 2 Data File

description: Data file associated with Chapter 2 (Dominance analysis).
DOI: 10.6084/m9.figshare.3115258.v1
title: Chapter 2

description: Data file associated with Chapter 2 (Dominance analysis).
DOI: 10.6084/m9.figshare.3114967
title: Thermal preference predicts animal personality in Nile tilapia Oreochromis niloticus data

description: Tilapia thermal choice and animal personality data. Data includes thermal choice expressed as both acute and final thermal referendum.
DOI: 10.6084/m9.figshare.3114850
title: A framework for identifying and characterizing protists in sewage, with a focus on zoonotic trichomonads

description: This fileset contains QIIME mapping files and outputs used to carry out the analysis in the manuscript entitled <b>"An 18S rRNA workflow for characterizing protists in sewage, with a focus on zoonotic trichomonads" </b>(Maritz, <i>et. al</i>, 2017, https://doi.org/10.1007/s00248-017-0996-9 )<br>Raw sewage samples from a private apartment building in New York City were subjected to environmental marker gene sequencing for the 18S rRNA gene (targeting eukaryotes).
DOI: 10.6084/m9.figshare.3114850.v1
title: A framework for identifying and characterizing protists in sewage, with a focus on zoonotic trichomonads

description: This fileset contains QIIME mapping files and outputs used to carry out the analysis in the manuscript entitled <b>"An 18S rRNA workflow for characterizing protists in sewage, with a focus on zoonotic trichomonads" </b>(Maritz, <i>et. al</i>, 2017, https://doi.org/10.1007/s00248-017-0996-9 )<br>Raw sewage samples from a private apartment building in New York City were subjected to environmental marker gene sequencing for the 18S rRNA gene (targeting eukaryotes).
DOI: 10.6084/m9.figshare.3114967.v1
title: Thermal preference_Nile tilapia.xlsx

description: Tilapia thermal choice and animal personality data. Data includes thermal choice expressed as both acute and final thermal referendum.
DOI: 10.6084/m9.figshare.3114844
title: SeFo 0.0.2

description: Software (Octave package) for seasonal forecasting
DOI: 10.6084/m9.figshare.3114844.v1
title: SeFo 0.0.2

description: Software (Octave package) for seasonal forecasting
DOI: 10.6084/m9.figshare.3114721.v1
title: Poster Barcelona RECs

description: Research Ethics Committees have a key role in the governance and oversight of research projects conducted on old data and on the use of platforms for data sharing on rare diseases. However RECs members usually do not have any expertise on linked data technologies. In connection with Elixir, RD-Connect will make proposals to undertake a pilot training program for RECs on the most relevant ethical aspects of Linked Data technology, in particular:<br>•The values and principles lying behind a data linkage approach•The risks and benefits of a data linkage based project•The implications for informed consent and patient participation<br>At the same time, REC evaluations and Informed Consent should be linked to other research activities and become computer readable, in order to automate the sharing of data for which consent or REC approval is available.
DOI: 10.6084/m9.figshare.3114637
title: Appendix IV from Ryalls (2016) PhD Thesis

description: Dataset used for the submitted paper 'The importance of testing multiple environmental factors in legume-insect research: replications, reviewers and rebuttal' by S.N. Johnson, A.N. Gherlenda, A. Frew and J.M.W. Ryalls
DOI: 10.6084/m9.figshare.3114655
title: Job satisfaction

description: satisfaction
DOI: 10.6084/m9.figshare.3114664
title: PI3K/AKT signaling pathway is essential for survival of induced pluripotent stem cells

description: Apoptosis is a highly conserved biochemical mechanism which is tightly controlled in cells. It contributes to maintenance of tissue homeostasis and normally eliminates highly proliferative cells with malignant properties. Induced pluripotent stem cells (iPSCs) have recently been described with significant functional and morphological similarities to embryonic stem cells. Human iPSCs are of great hope for regenerative medicine due to their broad potential to differentiate into specialized cell types in culture. They may be useful for exploring disease mechanisms and may provide the basis for future cell-based replacement therapies. However, there is only poor insight into iPSCs cell signaling as the regulation of apoptosis. In this study, we focused our attention on the apoptotic response of Alzheimer fibroblast-derived iPSCs and two other Alzheimer free iPSCs to five biologically relevant kinase inhibitors as well as to the death ligand TRAIL. To our knowledge, we are the first to report that the relatively high basal apoptotic rate of iPSCs is strongly suppressed by the pancaspase inhibitor QVD-Oph, thus underlining the dependency on proapoptotic caspase cascades. Furthermore, wortmannin, an inhibitor of phosphoinositid-3 kinase / Akt signaling (PI3K-AKT), dramatically and rapidly induced apoptosis in iPSCs. In contrast, parental fibroblasts as well as iPSC-derived neuronal cells were not responsive. The resulting condensation and fragmentation of DNA and decrease of the membrane potential are typical features of apoptosis. Comparable effects were observed with an AKT inhibitor (MK-2206). Wortmannin resulted in disappearance of phosphorylated AKT and activation of the main effector caspase-3 in iPSCs. These results clearly demonstrate for the first time that PI3K-AKT represents a highly essential survival signaling pathway in iPSCs. The findings provide improved understanding on the underlying mechanisms of apoptosis regulation in iPSCs.
DOI: 10.6084/m9.figshare.3114637.v1
title: Appendix IV from Ryalls (2016) PhD Thesis

description: Dataset used for the submitted paper 'The importance of testing multiple environmental factors in legume-insect research: replications, reviewers and rebuttal' by S.N. Johnson, A.N. Gherlenda, A. Frew and J.M.W. Ryalls
DOI: 10.6084/m9.figshare.3114619
title: Reference genome and BWA index files for Ebola virus

description: Data obtained from here: http://www.ncbi.nlm.nih.gov/nuccore/KJ660346
DOI: 10.6084/m9.figshare.3114619.v2
title: Reference genome and BWA index files for Ebola virus

description: Data obtained from here: http://www.ncbi.nlm.nih.gov/nuccore/KJ660346
DOI: 10.6084/m9.figshare.3114625.v1
title: Kudos-Promote your published research By Nader Ale Ebrahim.pdf

description: In order to ensure that the high quality work of your research, reaches the widest possible audience. You need tools to disseminate the research findings and publications. Kudos is one of the service that provides tools for researchers to maximize the visibility and reach of their published papers. Kudos provides a new way for authors to use social media to engage the digital community with their research. By creating 'profiles' for their published articles and adding short titles, lay summaries, impact statements and supplementary content, authors can make their articles more engaging for a digital readership.
DOI: 10.6084/m9.figshare.3114619.v1
title: KJ660346.zip

description: Reference genome and BWA index files for Ebola virus.
DOI: 10.6084/m9.figshare.3114454
title: Ebolavirus genome sequencing data for one sample from 2014 outbreak in Zaire

description: <b>Zaire ebolavirus genome sequencing from 2014 outbreak in Sierra Leone: Sample G5723.1</b><b><br></b><b>Downloaded from here (</b><b>http://www.ncbi.nlm.nih.gov/sra/?term=SRR1972917</b><b>) and converted to FASTQ format.</b>
DOI: 10.6084/m9.figshare.3114460
title: Basic and Clinical Pharmacology: questions & answers

description: Questions and answers of basic and clinical pharmacology.<br>This is an open access database, questions were formulated by medical students at the Universidad Santiago de Cali (Cali, Colombia), then the professor answers (welcoming alternative answers by the students).
DOI: 10.6084/m9.figshare.3114454.v1
title: Ebolavirus genome sequencing data for one sample from 2014 outbreak in Zaire

description: <b>Zaire ebolavirus genome sequencing from 2014 outbreak in Sierra Leone: Sample G5723.1</b><b><br></b><b>Downloaded from here (</b><b>http://www.ncbi.nlm.nih.gov/sra/?term=SRR1972917</b><b>) and converted to FASTQ format.</b>
DOI: 10.17632/df9rwnnnzd.1
title: Metabolic profiling of strawberry culitvars
DOI: 10.6084/m9.figshare.3114439
title: Dataset for "Low Temperature Steam Reforming of Methanol: Rationalising the Behaviour of Cu/Zn/Ga Oxide Catalysts"

description: Origin file containing all data relevant to the Part II thesis entitled "Low Temperature Steam Reforming of Methanol: Rationalising the Behaviour of Cu/Zn/Ga Oxide Catalysts".
DOI: 10.6084/m9.figshare.3114436
title: Raunkiaerian life-forms in the Atlantic forest and comparisons of life-form spectra among Brazilian main biomes - Supplementary files

description: We present here the supplementary files to the article "Raunkiaerian life-forms in the Atlantic forest and comparisons of life-form spectra among Brazilian main biomes" published in the Brazilian Journal of Botany (DOI: 10.1007/s40415-016-0281-z). The files are represented by:<br><br>1- A spreadsheet (in ODS format) containing the species list and the Raunkiaerian life-forms for each species in our study site (semideciduous Atlantic Forest in Serra dos Cocais, Valinhos municipality) plus the inedited floristic data provided by Dr. Juliano Van Melis, Dr. Leandro Vieira, Dr. Bruno Aranha, and Dr. André Rochelle for the semideciduous Atlantic Forest in Ribeirão Cachoeira (Campinas municipality) and ombrophilous Atlantic Forest in Serra do Mar State Park (Ubatuba municipality).<br><br>2- Table 1 of our article: the spectra of Brazilian biomes used in our comparisons, which were compiled from the studies of Batalha & Martins (2002) and Moro et al. (2016) plus our own data.<br><br>3- Table 2 of our article: the species list of our study site, as presented in our article.<br><br>To read our full paper, please go to: http://dx.doi.org/10.1007/s40415-016-0281-z<br><br><br>
DOI: 10.6084/m9.figshare.3114436.v1
title: Raunkiaerian life-forms in the Atlantic forest and comparisons of life-form spectra among Brazilian main biomes - Supplementary files

description: We present here the supplementary files to the article "Raunkiaerian life-forms in the Atlantic forest and comparisons of life-form spectra among Brazilian main biomes" published in the Brazilian Journal of Botany (DOI: 10.1007/s40415-016-0281-z). The files are represented by:<br><br>1- A spreadsheet (in ODS format) containing the species list and the Raunkiaerian life-forms for each species in our study site (semideciduous Atlantic Forest in Serra dos Cocais, Valinhos municipality) plus the inedited floristic data provided by Dr. Juliano Van Melis, Dr. Leandro Vieira, Dr. Bruno Aranha, and Dr. André Rochelle for the semideciduous Atlantic Forest in Ribeirão Cachoeira (Campinas municipality) and ombrophilous Atlantic Forest in Serra do Mar State Park (Ubatuba municipality).<br><br>2- Table 1 of our article: the spectra of Brazilian biomes used in our comparisons, which were compiled from the studies of Batalha & Martins (2002) and Moro et al. (2016) plus our own data.<br><br>3- Table 2 of our article: the species list of our study site, as presented in our article.<br><br>To read our full paper, please go to: http://dx.doi.org/10.1007/s40415-016-0281-z<br><br><br>
DOI: 10.6084/m9.figshare.3114439.v2
title: Dataset for "Low Temperature Steam Reforming of Methanol: Rationalising the Behaviour of Cu/Zn/Ga Oxide Catalysts"

description: Origin file containing all data relevant to the Part II thesis entitled "Low Temperature Steam Reforming of Methanol: Rationalising the Behaviour of Cu/Zn/Ga Oxide Catalysts".
DOI: 10.6084/m9.figshare.3114475.v1
title: Tabasco History

description: Enfoques historiográficos al Tabasco del siglo XIX
DOI: 10.6084/m9.figshare.3114481.v1
title: Proyecto cartas pesqueras

description: El reavivamiento del sistema de cooperativas en los cuerpos lagunares ubicados al sur del municipio de Centro, ha sido una estrategia adaptativa ante la reconfiguración de la propiedad privada. Tanto las cooperativas oficiales, como aquellas que han escapado al “control” gubernamental, pueden leerse como formas de organización social efectivas para negociar las reglas de acceso a los recursos ante el Estado y los grandes propietarios. Así también, las nuevas formas cooperativistas que van desde las agrupaciones que no se someten al control oficial, hasta aquellas que abren sus puertas para la especulación financiera, nos muestran los matices de las estrategias creativas que están desplegando los grupos, que de alguna forma han sido invisibilizados por la implementación de proyectos hidráulicos y de urbanización. Aunque este florecimiento del sistema de cooperativas ha contado con canales efectivos de organización, no han encontrado un instrumento efectivo que les permita tener una mejor planeación y administración de sus recursos. Muestra de esta carencia, son los incipientes croquis de localización y planos ordinarios de sus cuerpos lagunares. Aunado a ello, el sector pesquero no sólo enfrenta los problemas económicos derivados de las perturbaciones ecológicas, sino también una constante pérdida de los saberes tradicionales vinculados al agua. Es por ello, la necesidad de elaborar un instrumento cartográfico que albergue no sólo aspectos productivos y técnicos de los cuerpos lagunares periurbanos del municipio de Centro, sino también formas de conocimiento que muestren la interacción histórica de estos grupos con su medioambiente. El uso de este instrumento, facilitará la localización, conservación, gestión y administración de los recursos que poseen las cooperativas pesqueras.
DOI: 10.6084/m9.figshare.3114400
title: Data from Adipose Progenitor/Exercise Paper

description: These are the data from the figures used in our Plos One paper regarding adipose progenitors and exercise
DOI: 10.6084/m9.figshare.3114439.v1
title: Low Temperature Steam Reforming of Methanol: Rationalising the Behaviour of Cu/Zn/Ga Oxide Catalysts

description: Origin file containing all data relevant to the Part II thesis entitled "Low Temperature Steam Reforming of Methanol: Rationalising the Behaviour of Cu/Zn/Ga Oxide Catalysts".
DOI: 10.6084/m9.figshare.3114460.v1
title: Basic and Clinical Pharmacology: questions & answers

description: Questions and answers of basic and clinical pharmacology.<br>This is an open access database, questions were formulated by medical students at the Universidad Santiago de Cali (Cali, Colombia), then the professor answers (welcoming alternative answers by the students).
DOI: 10.17632/hm2hrmx3hg.1
title: Metabolite data of cassava leaf, stem and root
DOI: 10.6084/m9.figshare.3114400.v1
title: Data from Adipose Progenitor/Exercise Paper

description: These are the data from the figures used in our Plos One paper regarding adipose progenitors and exercise
DOI: 10.6084/m9.figshare.3114370
title: Dicty World Race _ team 09 tracks

description: Skoge M, Wong E, Hamza B, Bae A, Martel J, Kataria, R, Keizer-Gunnink, I, Kortholt A, van Haastert, P J M, Charras G, Janetopoulos C, Irimia D. A Worldwide Competition to Compare the Speed and Chemotactic Accuracy of Neutrophil-like Cells. PLOS One 2016
DOI: 10.6084/m9.figshare.3114370.v1
title: Dicty World Race _ team 09 tracks

description: Skoge M, Wong E, Hamza B, Bae A, Martel J, Kataria, R, Keizer-Gunnink, I, Kortholt A, van Haastert, P J M, Charras G, Janetopoulos C, Irimia D. A Worldwide Competition to Compare the Speed and Chemotactic Accuracy of Neutrophil-like Cells. PLOS One 2016
DOI: 10.6084/m9.figshare.3114181
title: Arkansas Asilidae database.xlsx

description: An Excel file documenting label data from museum specimens of adult robber flies collected in Arkansas, USA.<br>
DOI: 10.6084/m9.figshare.3114073
title: Hirjak_et_al_2016_Tabelle_1.xlsx

description: Dataset from our study on healthcare costs of Patients with Schizophrenia and schizoaffective disorders.
DOI: 10.6084/m9.figshare.3114181.v2
title: Arkansas Asilidae database.xlsx

description: An Excel file documenting label data from museum specimens of adult robber flies collected in Arkansas, USA.<br>
DOI: 10.6084/m9.figshare.3113824
title: Mt. Pelmo dinsoaur tracksite. 3D photogrammetric models

description: Supplementary Data for Belvedere et al., 2017 Dinosaur footprints from the top of Monte Pelmo: new data for Early Jurassic palaeogeography of the Dolomites (NE Italy), <i>Bollettino della Società Paleontologica Italiana,</i> 56.<b></b><br>Supplementary data 1: 3D photogrammetric model, scaled at 25 million polygons, of the main surface of the Pelmo site. Only Pelm.A1 is not present in this model, as it was recorded far away from the main surface. <br>Supplementary data 2: 3D photogrammetric model of Pelm.A1 <br>Supplementary data 3: 3D photogrammetric model of Pelm.B5 <br>Supplementary data 4: 3D photogrammetric model of Pelm.D1 <br>Photos: contains the photos used for the photogrammetry; Folders are named accordingly to the model names.<br>
DOI: 10.6084/m9.figshare.3114073.v1
title: Hirjak_et_al_2016_Tabelle_1.xlsx

description: Dataset from our study on healthcare costs of Patients with Schizophrenia and schizoaffective disorders.
DOI: 10.6084/m9.figshare.3113728
title: fluff example data

description: This is<b> example</b> data, these files only contain reads mapped to <b>chromosome 1!</b><br><br>This data set was created as example data for fluff. <br>See http://fluff.readthedocs.org/.<br>The following data from Bing Ren's lab was downloaded from NCBI GEO:<br><br>GSM878616 H1 DNase<br>GSM878621 H1 DNase<br>GSM466732 H1 H3K27ac<br>GSM663427 H1 H3K27ac<br>GSM767341 H1_mesenchymal H3K27ac<br>GSM767342 H1_mesenchymal H3K27ac<br>GSM753425 H1_mesendoderm H3K27ac<br>GSM753426 H1_mesendoderm H3K27ac<br>GSM864035 H1_mesendoderm H3K27ac<br>GSM864799 H1_mesendoderm H3K27ac<br>GSM753429 H1_neuronal_progenitor H3K27ac<br>GSM767343 H1_neuronal_progenitor H3K27ac<br>GSM818031 H1_neuronal_progenitor H3K27ac<br>GSM896162 H1_neuronal_progenitor H3K27ac<br>GSM753427 H1_trophoblast H3K27ac<br>GSM753428 H1_trophoblast H3K27ac<br>GSM864800 H1_trophoblast H3K27ac<br><br>FASTQ files were mapped to hg19 using bwa mem. Replicates were merged and all reads on chr1 were selected, and subsampled to 25%.<br>
DOI: 10.6084/m9.figshare.3114181.v1
title: Arkansas Asilidae database.xlsx

description: An Excel file documenting label data from museum specimens of adult robber flies collected in Arkansas, USA.<br>
DOI: 10.6084/m9.figshare.3113824.v2
title: Mt. Pelmo dinsoaur tracksite. 3D photogrammetric models

description: Supplementary Data for Belvedere et al., 2017 Dinosaur footprints from the top of Monte Pelmo: new data for Early Jurassic palaeogeography of the Dolomites (NE Italy), <i>Bollettino della Società Paleontologica Italiana,</i> 56.<b></b><br>Supplementary data 1: 3D photogrammetric model, scaled at 25 million polygons, of the main surface of the Pelmo site. Only Pelm.A1 is not present in this model, as it was recorded far away from the main surface. <br>Supplementary data 2: 3D photogrammetric model of Pelm.A1 <br>Supplementary data 3: 3D photogrammetric model of Pelm.B5 <br>Supplementary data 4: 3D photogrammetric model of Pelm.D1 <br>Photos: contains the photos used for the photogrammetry; Folders are named accordingly to the model names.<br>
DOI: 10.6084/m9.figshare.3113824.v1
title: Mt. Pelmo dinsoaur tracksite. 3D photogrammetric models.

description: Supplementary Data for Belvedere et al., 2017 Dinosaur footprints from the top of Monte Pelmo: new data for Early Jurassic palaeogeography of the Dolomites (NE Italy), <i>Bollettuno della Società Paleontologica Italiana,</i> 56.<b></b><br>Supplementary data 1: 3D photogrammetric model, scaled at 25 million polygons, of the main surface of the Pelmo site. Only Pelm.A1 is not present in this model, as it was recorded far away from the main surface. <br>Supplementary data 2: 3D photogrammetric model of Pelm.A1 <br>Supplementary data 3: 3D photogrammetric model of Pelm.B5 <br>Supplementary data 4: 3D photogrammetric model of Pelm.D1 <br>Photos: contains the photos used for the photogrammetry; Folders are named accordingly to the model names.<br>