cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3810133_d2
title: Additional file 2: of Experimental validation of the RATE tool for inferring HLA restrictions of T cell epitopes

description: RATE_validation_Additional_file_2.xlsx: Analysis report generated by RATE for each peptide/allele combinations in the MTB data set used for identification of HLA allele restriction by RATE. (XLSX 1370Â kb)
DOI: 10.6084/m9.figshare.c.3810133_d3.v1
title: Additional file 3: of Experimental validation of the RATE tool for inferring HLA restrictions of T cell epitopes

description: RATE_validation_Additional_file_3.xlsx: Positive and negative restrictions of the 102 HLA/peptide combinations derived from the HLA restrictions determined experimentally using transfected cell lines. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3810133_d3
title: Additional file 3: of Experimental validation of the RATE tool for inferring HLA restrictions of T cell epitopes

description: RATE_validation_Additional_file_3.xlsx: Positive and negative restrictions of the 102 HLA/peptide combinations derived from the HLA restrictions determined experimentally using transfected cell lines. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3810133_d4.v1
title: Additional file 4: of Experimental validation of the RATE tool for inferring HLA restrictions of T cell epitopes

description: RATE_validation_Additional_file_4.xlsx: Effect of different cutoff values for A+R+ on RATE results. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3810133_d5.v1
title: Additional file 5; of Experimental validation of the RATE tool for inferring HLA restrictions of T cell epitopes

description: RATE_validation_Additional_file_5.xlsx: Effect of different predicted binding (IEDB consensus percentile rank) cutoffs on RATE results. (XLSX 9Â kb)
DOI: 10.5281/zenodo.14513631
title: Grossneuhausen Adler Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope):

https://kalliope-verbund.info/ead?ead.id=DE-611-BF-70963

Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.6084/m9.figshare.c.3810160_d2.v1
title: Additional file 2: Table S2. of Evolution of the vertebrate insulin receptor substrate (Irs) gene family

description: This file is in Excel format. Accession numbers of Irs-like coding sequences from vertebrates and outroup species identified from the NCBI database. (XLSX 218 kb)
DOI: 10.6084/m9.figshare.c.3810160_d2
title: Additional file 2: Table S2. of Evolution of the vertebrate insulin receptor substrate (Irs) gene family

description: This file is in Excel format. Accession numbers of Irs-like coding sequences from vertebrates and outroup species identified from the NCBI database. (XLSX 218 kb)
DOI: 10.5281/zenodo.14513637
title: MOGCityApp Export of Data from the citizen application app, return messages from residents.
DOI: 10.5281/zenodo.14513638
title: MOGCityApp Export of Data from the citizen application app, return messages from residents.
DOI: 10.15468/dl.x5k3f4
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bellator brachychir (Regan, 1914)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 14 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038971-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3810193_d2
title: Additional file 2: Table S2. of Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae)

description: Reported size of contig for each gene in the phylogenetic analysis for each taxon, including nuclear and plastid loci. (XLSX 64Â kb)
DOI: 10.6084/m9.figshare.c.3810190_d3
title: Additional file 3: Table S2. of Transcriptomic dynamics in soybean near-isogenic lines differing in alleles for an aphid resistance gene, following infestation by soybean aphid biotype 2

description: Primer sequences for quantitative RT-PCR for validating RNA sequencing data of selected eight genes. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3810190_d4.v1
title: Additional file 4: Table S3. of Transcriptomic dynamics in soybean near-isogenic lines differing in alleles for an aphid resistance gene, following infestation by soybean aphid biotype 2

description: Gene ontology and relative transcript abundance of the 915 DEGs consistently significant in the R-NIL. (XLSX 114Â kb)
DOI: 10.6084/m9.figshare.c.3810190_d4
title: Additional file 4: Table S3. of Transcriptomic dynamics in soybean near-isogenic lines differing in alleles for an aphid resistance gene, following infestation by soybean aphid biotype 2

description: Gene ontology and relative transcript abundance of the 915 DEGs consistently significant in the R-NIL. (XLSX 114Â kb)
DOI: 10.6084/m9.figshare.c.3810190_d5.v1
title: Additional file 5: Table S4. of Transcriptomic dynamics in soybean near-isogenic lines differing in alleles for an aphid resistance gene, following infestation by soybean aphid biotype 2

description: Gene ontology and relative transcript abundance of the 20 DEGs consistently significant in the S-NIL. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3810190_d5
title: Additional file 5: Table S4. of Transcriptomic dynamics in soybean near-isogenic lines differing in alleles for an aphid resistance gene, following infestation by soybean aphid biotype 2

description: Gene ontology and relative transcript abundance of the 20 DEGs consistently significant in the S-NIL. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3810205_d1
title: Additional file 1: of Genome-wide analysis of DNA methylation in hypothalamus and ovary of Capra hircus

description: List and position of CGIs found across the goat reference genome. (XLSX 3401 kb)
DOI: 10.6084/m9.figshare.c.3810205_d2.v1
title: Additional file 2: of Genome-wide analysis of DNA methylation in hypothalamus and ovary of Capra hircus

description: Comparison between methylated CGIs per chromosome in hypothalamus and ovary vs the total number of CGIs. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3810190_d6.v1
title: Additional file 6: Table S5. of Transcriptomic dynamics in soybean near-isogenic lines differing in alleles for an aphid resistance gene, following infestation by soybean aphid biotype 2

description: Enriched gene ontology terms identified from the 242 differentially expressed genes in the R-NIL at 48Â h after aphid infestation. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.c.3810193_d6.v1
title: Additional file 6: Table S5. of Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae)

description: Differentially expressed transcripts from within and between taxa comparisons, with associated annotations from the BLASTx analysis. (XLSX 3293Â kb)
DOI: 10.6084/m9.figshare.c.3810205_d2
title: Additional file 2: of Genome-wide analysis of DNA methylation in hypothalamus and ovary of Capra hircus

description: Comparison between methylated CGIs per chromosome in hypothalamus and ovary vs the total number of CGIs. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3810160_d5.v1
title: Additional file 5: Figure S3. of Evolution of the vertebrate insulin receptor substrate (Irs) gene family

description: This file is in PDF format. Phylogeny of vertebrate Irs2 sequences. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3810190_d6
title: Additional file 6: Table S5. of Transcriptomic dynamics in soybean near-isogenic lines differing in alleles for an aphid resistance gene, following infestation by soybean aphid biotype 2

description: Enriched gene ontology terms identified from the 242 differentially expressed genes in the R-NIL at 48Â h after aphid infestation. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.c.3810205_d3.v1
title: Additional file 3: of Genome-wide analysis of DNA methylation in hypothalamus and ovary of Capra hircus

description: List of DMRs and DMGs between hypothalamus and ovary. For every DMR a P-value and a FDR is shown. (XLSX 395 kb)
DOI: 10.15468/dl.3mkkz8
title: Occurrence Download

description: A dataset containing 22031 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sinapis alba L., Bonnania officinalis C.Presl, Sinapis alba var. alba, Sinapis alba f. alba, Rhamphospermum album (L.) Andrz., Leucosinapis sativa Kirschl., 1870, Napus leucosinapis K.F.Schimp. & Spenn., Raphanus albus (L.) Crantz, Rhamphospermum album (L.) Andrz. ex Rchb., Leucosinapis alba (L.) Spach, Sinapistrum album (L.) Chevall., 1827, Eruca alba (L.) Noulet, Brassica alba (L.) Rabenh.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 22031 records from 448 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038972-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4cvmnv
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bellator egretta (Goode & Bean, 1896)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038973-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3810316_d2.v1
title: Additional file 2 of Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems

description: Supplementary Code. Containing a standalone implementation of methods, benchmark problems, data sets and analysis tools used in this study. (ZIP 6953 kb)
DOI: 10.6084/m9.figshare.c.3810316_d2
title: Additional file 2 of Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems

description: Supplementary Code. Containing a standalone implementation of methods, benchmark problems, data sets and analysis tools used in this study. (ZIP 6953 kb)
DOI: 10.6084/m9.figshare.c.3810322_d7.v1
title: Additional file 7 of SBMLmod: a Python-based web application and web service for efficient data integration and model simulation

description: S7 — TCGA sample IDs. List of TCGA sample IDs used to calculate the results presented in Fig. 2 c and d. (TXT 76 kb)
DOI: 10.6084/m9.figshare.c.3810322_d6.v1
title: Additional file 6 of SBMLmod: a Python-based web application and web service for efficient data integration and model simulation

description: Table S6 — detailed statistical results for dataset of 32 tissues. This file provides ANOVA and post hoc pairwise test statistics for all 32 tissues that have been analysed and described in the subsection ’Tissue specific differences in tryptophan metabolites’. (XLS 71 kb)
DOI: 10.6084/m9.figshare.c.3810322_d7
title: Additional file 7 of SBMLmod: a Python-based web application and web service for efficient data integration and model simulation

description: S7 — TCGA sample IDs. List of TCGA sample IDs used to calculate the results presented in Fig. 2 c and d. (TXT 76 kb)
DOI: 10.6084/m9.figshare.c.3810322_d6
title: Additional file 6 of SBMLmod: a Python-based web application and web service for efficient data integration and model simulation

description: Table S6 — detailed statistical results for dataset of 32 tissues. This file provides ANOVA and post hoc pairwise test statistics for all 32 tissues that have been analysed and described in the subsection ’Tissue specific differences in tryptophan metabolites’. (XLS 71 kb)
DOI: 10.6084/m9.figshare.c.3810322_d8
title: Additional file 8 of SBMLmod: a Python-based web application and web service for efficient data integration and model simulation

description: Table S8 — statistics for TCGA dataset. This table provides ANOVA and post hoc pairwise test statistics for the TCGA data application as described in section ‘Different cancer types possess notable differences in kynurenine and serotonin concentrations’. (XLS 11 kb)
DOI: 10.5281/zenodo.14506943
title: MOGStormWater Sensor output from Storm Water Management from Gjøvik municipality in the TransformAr project for the last 365 days
DOI: 10.5281/zenodo.14506944
title: MOGStormWater Sensor output from Storm Water Management from Gjøvik municipality in the TransformAr project for the last 365 days
DOI: 10.6084/m9.figshare.c.3810442_d2.v1
title: Additional file 2: of Scattered genomic amplification in dedifferentiated liposarcoma

description: SNP array results from the two tumor samples. (ZIP 720Â kb)
DOI: 10.6084/m9.figshare.c.3810442_d2
title: Additional file 2: of Scattered genomic amplification in dedifferentiated liposarcoma

description: SNP array results from the two tumor samples. (ZIP 720Â kb)
DOI: 10.15468/dl.wvxkce
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bellator militaris (Goode & Bean, 1896)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 72 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038974-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3810442_d3.v1
title: Additional file 3: of Scattered genomic amplification in dedifferentiated liposarcoma

description: Putative fusion transcripts detected at mRNA sequencing. (XLSX 26Â kb)
DOI: 10.60656/8f98f838e09247d7
title: Custom collection of ice water content data from Bucharest, Chilbolton, Galați, Hyytiälä, Jülich, and 7 other sites on 25 Jan 2023
DOI: 10.6084/m9.figshare.c.3810442_d3
title: Additional file 3: of Scattered genomic amplification in dedifferentiated liposarcoma

description: Putative fusion transcripts detected at mRNA sequencing. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.c.3810430_d5.v1
title: Additional file 14: Table S4. of A high-quality annotated transcriptome of swine peripheral blood

description: PTs assigned with HGNC gene symbols and Ensembl pig Gene IDs and tissue or cell types where their human counterparts specifically or preferentially expressed. (TXT 3006Â kb)
DOI: 10.6084/m9.figshare.c.3810430_d5
title: Additional file 14: Table S4. of A high-quality annotated transcriptome of swine peripheral blood

description: PTs assigned with HGNC gene symbols and Ensembl pig Gene IDs and tissue or cell types where their human counterparts specifically or preferentially expressed. (TXT 3006Â kb)
DOI: 10.6084/m9.figshare.c.3810523_d2.v1
title: Additional file 11: Table S7. of Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds

description: Detailed information about genes integrated in nodes of proteinâ  protein interaction network. (ODS 15Â kb)
DOI: 10.6084/m9.figshare.c.3810526_d1.v1
title: Additional file 10: of Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction

description: Protein coding gene annotations. Table S6. The predicted protein coding genes of D. coronatus are listed with their annotations. Table S7. The orthologs for C. elegans genes are shown. (XLSX 19699Â kb)
DOI: 10.6084/m9.figshare.c.3810526_d1
title: Additional file 10: of Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction

description: Protein coding gene annotations. Table S6. The predicted protein coding genes of D. coronatus are listed with their annotations. Table S7. The orthologs for C. elegans genes are shown. (XLSX 19699Â kb)
DOI: 10.6084/m9.figshare.c.3810523_d2
title: Additional file 11: Table S7. of Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds

description: Detailed information about genes integrated in nodes of proteinâ  protein interaction network. (ODS 15Â kb)
DOI: 10.6084/m9.figshare.c.3810523_d4.v1
title: Additional file 13: Table S8. of Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds

description: Information about predicted proteinâ  protein interaction network depicted in Fig. 6. (ODS 15Â kb)
DOI: 10.6084/m9.figshare.c.3810526_d4.v1
title: Additional file 13: of Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction

description: 3â ˛EST clustering program (cluster3.sh). This shell script originally written for C.elegans EST analysis was used. (TXT 5Â kb)
DOI: 10.6084/m9.figshare.c.3810523_d4
title: Additional file 13: Table S8. of Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds

description: Information about predicted proteinâ  protein interaction network depicted in Fig. 6. (ODS 15Â kb)
DOI: 10.6084/m9.figshare.c.3810523_d5.v1
title: Additional file 14: Table S9. of Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds

description: Primer sequences used for RT-PCR analyses (Figs. 2 and 5). (ODS 16Â kb)
DOI: 10.6084/m9.figshare.c.3810523_d5
title: Additional file 14: Table S9. of Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds

description: Primer sequences used for RT-PCR analyses (Figs. 2 and 5). (ODS 16Â kb)
DOI: 10.6084/m9.figshare.c.3810526_d4
title: Additional file 13: of Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction

description: 3â ˛EST clustering program (cluster3.sh). This shell script originally written for C.elegans EST analysis was used. (TXT 5Â kb)
DOI: 10.6084/m9.figshare.c.3810523_d14
title: Additional file 9: Table S6. of Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds

description: Detailed promoter regions of 10 CREs uniquely identified in Os1-CysPrxB group compared with Os1-CysPrxA group. (ODS 87Â kb)
DOI: 10.60656/9bafeb35fe944f91
title: Custom collection of ice water content data from Bucharest, Chilbolton, Galați, Hyytiälä, Jülich, and 7 other sites on 26 Jan 2023
DOI: 10.6084/m9.figshare.c.3811396_d1.v1
title: Additional file 1: of Improved methods and resources for paramecium genomics: transcription units, gene annotation and gene expression

description: Table S1. RNA sequencing. Table S2. Genes with potential alternative TSS. Table S3. Differential expression of genes with known autogamy expression profiles. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3811396_d1
title: Additional file 1: of Improved methods and resources for paramecium genomics: transcription units, gene annotation and gene expression

description: Table S1. RNA sequencing. Table S2. Genes with potential alternative TSS. Table S3. Differential expression of genes with known autogamy expression profiles. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3811399_d1.v1
title: Additional file 1 of ReTrOS: a MATLAB toolbox for reconstructing transcriptional activity from gene and protein expression data

description: Toolbox and data. The MATLAB code for running ReTrOS toolbox. This also includes the data used in the illustrative examples and the user manual that provides the instructions on how to run the toolbox. (ZIP 52838 kb)
DOI: 10.6084/m9.figshare.c.3811390_d2.v1
title: Additional file 2. of In which developing countries are patents on essential medicines being filed?

description: Essential medicine patent data files. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3811399_d1
title: Additional file 1 of ReTrOS: a MATLAB toolbox for reconstructing transcriptional activity from gene and protein expression data

description: Toolbox and data. The MATLAB code for running ReTrOS toolbox. This also includes the data used in the illustrative examples and the user manual that provides the instructions on how to run the toolbox. (ZIP 52838 kb)
DOI: 10.6084/m9.figshare.c.3811390_d2
title: Additional file 2. of In which developing countries are patents on essential medicines being filed?

description: Essential medicine patent data files. (XLSX 45 kb)
DOI: 10.5281/zenodo.14513652
title: Gross-Neukirch Marien Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope):

https://kalliope-verbund.info/ead?ead.id=DE-611-BF-70963

Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.6084/m9.figshare.c.3811756_d1.v1
title: MOESM1 of A large-scale behavior change intervention to prevent Nipah transmission in Bangladesh: components and costs

description: Additional file 1. Start-up cost to prepare the intervention covering 30 Nipah-affected districts with at least one Nipah spillover, Bangladesh, supporting document for TableÂ 4.
DOI: 10.6084/m9.figshare.c.3811756_d1
title: MOESM1 of A large-scale behavior change intervention to prevent Nipah transmission in Bangladesh: components and costs

description: Additional file 1. Start-up cost to prepare the intervention covering 30 Nipah-affected districts with at least one Nipah spillover, Bangladesh, supporting document for TableÂ 4.