cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.3x8g4a
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Goodenia xanthotricha de Vriese"
 ]
}

 The dataset includes 23 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0232652-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2tzs3a
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dicrotendipes pelochloris (Kieffer, 1912)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 23 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0216435-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xm2pwy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium sosvaense Schljakov"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0246550-230224095556074/datasets/export for details.
DOI: 10.15468/dl.uh724e
title: Occurrence Download

description: A dataset containing 1668 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leontopodium ochroleucum Beauverd"
 ]
}

 The dataset includes 1668 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006007-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hsec54
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((143.812776 -36.622776, 143.812776 -36.625022, 143.815021 -36.625022, 143.815021 -36.622776, 143.812776 -36.622776))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065811-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26589270
title: Additional file 2 of Proteomics and cytokine analyses distinguish myalgic encephalomyelitis/chronic fatigue syndrome cases from controls

description: Additional file 2. p-values, q-values, and the ratios of mean protein analyte level for the ME/CFS group versus controls for the EV cytokine, plasma cytokine and plasma proteomics datasets. p-values are shown prior adjusting for multiple hypotheses and after correction for multiple comparison using the Benjamini–Hochberg method for false discovery rate (q-values).
DOI: 10.6084/m9.figshare.22827018
title: Additional file 6 of Multi-label transcriptional classification of colorectal cancer reflects tumor cell population heterogeneity

description: Additional file 6: Table S6. Overlap between CRIS classes in NTP multilabel assignments. Analysis performed on TCGA dataset.
DOI: 10.6084/m9.figshare.26564874
title: Additional file 3 of Inhibiting KCNMA1-AS1 promotes osteogenic differentiation of HBMSCs via miR-1303/cochlin axis

description: Additional file 3: Table S3. Differentially expressed lncRNAs between control subjects and osteoporosis subjects in the GSE35958.
DOI: 10.15468/dl.2xgjqx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((149.126336 -32.292876, 149.133073 -32.292876, 149.133073 -32.288384, 149.128582 -32.288384, 149.128582 -32.29063, 149.126336 -32.29063, 149.126336 -32.292876)), ((149.126336 -32.292876, 149.12409 -32.292876, 149.12409 -32.297367, 149.126336 -32.297367, 149.126336 -32.292876)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065813-240626123714530/datasets/export for details.
DOI: 10.15468/dl.xxtxdh
title: Occurrence Download

description: A dataset containing 14386 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Country mismatch, The taxon ID was not used in backbone matching, The scientific name differs on the record from that found in the checklist, The backbone match found using the taxon IDs differs from what would be found if using the scientific names , Individual count invalid, Individual count conflicts with occurrence status)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pomacanthus Lacepède, 1802"
 ]
}

 The dataset includes 14386 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065812-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26564886
title: Additional file 2 of Rickettsiales in the WHO European Region: an update from a One Health perspective

description: Additional file 2. List of references.
DOI: 10.6084/m9.figshare.26564910
title: Additional file 3 of Pan-cancer onco-signatures reveal a novel mitochondrial subtype of luminal breast cancer with specific regulators

description: Additional file 3: Table S2. List of Differentially Expressed Genes (DEGs): Cluster 4 vs Cluster 2. List of genes exhibiting significant differential expression between Cluster 4 and Cluster 2.
DOI: 10.6084/m9.figshare.26564889
title: Additional file 3 of Rickettsiales in the WHO European Region: an update from a One Health perspective

description: Additional file 3. List of references by country.
DOI: 10.5281/zenodo.12804223
title: Python functions -- cross-validation methods from a data-driven perspective

description: This is the organized python functions of proposed methods in Yanwen Wang PhD research. Researchers can directly use these functions to conduct spatial+ cross-validation (SP-CV), dissimilarity quantification by adversarial validation (AVD), and dissimilarity-adaptive cross-validation (DA-CV). The description of how to run codes is in Readme.txt. The descriptions of functions are in functions.docx.
DOI: 10.6084/m9.figshare.26564895
title: Additional file 5 of Rickettsiales in the WHO European Region: an update from a One Health perspective

description: Additional file 5. Rickettsiales found in humans.
DOI: 10.6084/m9.figshare.26646870
title: Additional file 2 of survextrap: a package for flexible and transparent survival extrapolation

description: Additional file 2: Further details and reproducible code for the cetuximab case study
DOI: 10.6084/m9.figshare.26646870.v1
title: Additional file 2 of survextrap: a package for flexible and transparent survival extrapolation

description: Additional file 2: Further details and reproducible code for the cetuximab case study
DOI: 10.15468/dl.nxeegn
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron ×trichophorum Balf.fil."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065814-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/2jqe-mz45
title: CSIRO Harden Long-Term Tillage Experiment

description: The data comprises soil, plant, climatic and management data arising from a 30-year (1990-2019) on-farm field experiment comparing a range of tillage and stubble management treatments in a continuous annual winter-cropping sequence. The crops include wheat, canola, narrow-leafed lupin and fieldpea as a winter cover crop. The tillage and stubble treatments included a factorial combination of stubble burning in autumn, or stubble retention with cultivation (once pre-sowing with tyned implement), and / or no-till. In addition, a stubble incorporate treatment was included involving disc ploughing to incorporate the residue on the first rain after harvest each year, and further cultivation for weed control where necessary. These 5 treatments spanned the entire 30 years. This stubble incorporated treatment was split for + or - supplementary nutrients applied to the stubble prior to cultivation as a strategy to increase carbon sequestration from the residue between 2007 and 2014. Regular measurements included plant population, biomass, yield and yield components, grain quality, soil mineral N and soil water pre-sowing and at harvest. Several publications have been published from the experiment on crop productivity, soil biology, soil carbon and constraints to the productivity of no-till systems.
DOI: 10.15468/dl.6pg29u
title: Occurrence Download

description: A dataset containing 4410 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Country mismatch, The taxon ID was not used in backbone matching, The scientific name differs on the record from that found in the checklist, The backbone match found using the taxon IDs differs from what would be found if using the scientific names , Individual count invalid, Individual count conflicts with occurrence status)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pygoplites Fraser-Brunner, 1933"
 ]
}

 The dataset includes 4410 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065815-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26589396.v1
title: Additional file 9 of The oral microbiota is a reservoir for antimicrobial resistance: resistome and phenotypic resistance characteristics of oral biofilm in health, caries, and periodontitis

description: Additional file 9: Raw data of the phenotypic resistance analysis.
DOI: 10.6084/m9.figshare.22827015
title: Additional file 5 of Multi-label transcriptional classification of colorectal cancer reflects tumor cell population heterogeneity

description: Additional file 5: Table S5. Average of distance to the centroids of CRIS classes for primary and not primary assignments. The statistical significance has been computed by Student's T-test.
DOI: 10.15468/dl.mu2rdz
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((145.133305 -36.627268, 145.133305 -36.631759, 145.135551 -36.631759, 145.135551 -36.627268, 145.133305 -36.627268))"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065816-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.22827021.v1
title: Additional file 7 of Multi-label transcriptional classification of colorectal cancer reflects tumor cell population heterogeneity

description: Additional file 7: Table S7. Summary of the number of samples assigned to secondary classes with peculiar molecular features as MSI status, BRAF/KRAS mutation and EMT, WNT and paneth scoring. For dichotomous variables, hypergeometric p-value has been computed to assign statistical significance at the ratio Observed over the Expected. For continuous variable, Student's T-test was performed. NC, not assigned to reference class, i.e. not assigned to that class.
DOI: 10.6084/m9.figshare.22827030
title: Additional file 10 of Multi-label transcriptional classification of colorectal cancer reflects tumor cell population heterogeneity

description: Additional file 10: Table S9. NTP-based multiCRIS classification in the bulk CRC organoids. NTP analysis has been performed on bulk PDO data identifying sample with Single-label CRIS classification, Multi-labels CRIS classification, and Not classification. For classassignmentby NTP, FDR &lt; 0.2 was considered significant.
DOI: 10.6084/m9.figshare.22827030.v1
title: Additional file 10 of Multi-label transcriptional classification of colorectal cancer reflects tumor cell population heterogeneity

description: Additional file 10: Table S9. NTP-based multiCRIS classification in the bulk CRC organoids. NTP analysis has been performed on bulk PDO data identifying sample with Single-label CRIS classification, Multi-labels CRIS classification, and Not classification. For classassignmentby NTP, FDR &lt; 0.2 was considered significant.
DOI: 10.6084/m9.figshare.22827033.v1
title: Additional file 11 of Multi-label transcriptional classification of colorectal cancer reflects tumor cell population heterogeneity

description: Additional file 11: Table S10a. NTP-based multiCRIS classification on scRNA-seq profiles of CRC organoids. NTP analysis has been performed on scRNA-seq PDO data identifying cell with single-label class CRIS, Multi-label classes CRIS, and not classification. For classassignmentby NTP, FDR &lt; 0.2 was considered significant. Table S10b. NTP-based multiCRIS classification in the CRC organoids. Summary table of NTP results on total single-cell datasets and at sample levels with percentages of cells assigned, not classified, single-label CRIS class assignment and multi-labels CRIS assignments.
DOI: 10.6084/m9.figshare.26589393
title: Additional file 8 of The oral microbiota is a reservoir for antimicrobial resistance: resistome and phenotypic resistance characteristics of oral biofilm in health, caries, and periodontitis

description: Additional file 8: Metagenomics sequencing results with taxonomic assignment.
DOI: 10.6084/m9.figshare.26589396
title: Additional file 9 of The oral microbiota is a reservoir for antimicrobial resistance: resistome and phenotypic resistance characteristics of oral biofilm in health, caries, and periodontitis

description: Additional file 9: Raw data of the phenotypic resistance analysis.
DOI: 10.6084/m9.figshare.22827048
title: Additional file 16 of Multi-label transcriptional classification of colorectal cancer reflects tumor cell population heterogeneity

description: Additional file 16: Table S15. Multi-label assignments of the algorithm-adapted LSVM on TCGA testing samples, compared with multi-label assignments from the multiCRIS version of the NTP approach.
DOI: 10.6084/m9.figshare.22827054
title: Additional file 18 of Multi-label transcriptional classification of colorectal cancer reflects tumor cell population heterogeneity

description: Additional file 18: Table S17. Genes selected based on feature importance.
DOI: 10.6084/m9.figshare.26589393.v1
title: Additional file 8 of The oral microbiota is a reservoir for antimicrobial resistance: resistome and phenotypic resistance characteristics of oral biofilm in health, caries, and periodontitis

description: Additional file 8: Metagenomics sequencing results with taxonomic assignment.
DOI: 10.6084/m9.figshare.26564910.v1
title: Additional file 3 of Pan-cancer onco-signatures reveal a novel mitochondrial subtype of luminal breast cancer with specific regulators

description: Additional file 3: Table S2. List of Differentially Expressed Genes (DEGs): Cluster 4 vs Cluster 2. List of genes exhibiting significant differential expression between Cluster 4 and Cluster 2.
DOI: 10.6084/m9.figshare.26564913
title: Additional file 4 of Pan-cancer onco-signatures reveal a novel mitochondrial subtype of luminal breast cancer with specific regulators

description: Additional file 4: Table S3. List of Differentially Expressed miRNAs (DEmiRs): Cluster 4 vs Cluster 2. List of microRNAs exhibiting significant differential expression between Cluster 4 and Cluster 2.
DOI: 10.6084/m9.figshare.22826994.v1
title: Additional file 1 of Multi-label transcriptional classification of colorectal cancer reflects tumor cell population heterogeneity

description: Additional file 1: Table S1. Gene expression profile measured as reads count per genes of PDX collectionaccording to GeneCode version 27 quantified by featureCounts. Reads mapped to Mus Musculus genome were removed from the gene quantification.
DOI: 10.6084/m9.figshare.22827006.v1
title: Additional file 2 of Multi-label transcriptional classification of colorectal cancer reflects tumor cell population heterogeneity

description: Additional file 2: Table S2. Assignment of 620 TCGA samples using the Nearest Template PredictionmultiCRIS classifier. In the results, we identified samples with single label class CRIS, multi-label classes CRIS, and not classified. For classassignmentby NTP, FDR &lt; 0.2 was considered significant.
DOI: 10.6084/m9.figshare.22827006
title: Additional file 2 of Multi-label transcriptional classification of colorectal cancer reflects tumor cell population heterogeneity

description: Additional file 2: Table S2. Assignment of 620 TCGA samples using the Nearest Template PredictionmultiCRIS classifier. In the results, we identified samples with single label class CRIS, multi-label classes CRIS, and not classified. For classassignmentby NTP, FDR &lt; 0.2 was considered significant.
DOI: 10.15468/dl.jx4uf9
title: Occurrence Download

description: A dataset containing 473 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((149.272313 -32.261435, 149.272313 -32.265926, 149.256592 -32.265926, 149.256592 -32.274909, 149.258838 -32.274909, 149.258838 -32.288384, 149.254347 -32.288384, 149.254347 -32.29063, 149.256592 -32.29063, 149.256592 -32.292876, 149.258838 -32.292876, 149.258838 -32.29063, 149.26333 -32.29063, 149.26333 -32.288384, 149.267821 -32.288384, 149.267821 -32.286138, 149.290279 -32.286138, 149.290279 -32.283893, 149.272313 -32.283893, 149.272313 -32.281647, 149.270067 -32.281647, 149.270067 -32.277155, 149.274559 -32.277155, 149.274559 -32.274909, 149.281296 -32.274909, 149.281296 -32.277155, 149.290279 -32.277155, 149.290279 -32.281647, 149.294771 -32.281647, 149.294771 -32.283893, 149.297017 -32.283893, 149.297017 -32.286138, 149.299263 -32.286138, 149.299263 -32.288384, 149.303754 -32.288384, 149.303754 -32.279401, 149.299263 -32.279401, 149.299263 -32.277155, 149.294771 -32.277155, 149.294771 -32.274909, 149.292525 -32.274909, 149.292525 -32.272664, 149.288034 -32.272664, 149.288034 -32.270418, 149.274559 -32.270418, 149.274559 -32.268172, 149.27905 -32.268172, 149.27905 -32.26368, 149.276805 -32.26368, 149.276805 -32.261435, 149.272313 -32.261435), (149.270067 -32.277155, 149.265576 -32.277155, 149.265576 -32.274909, 149.270067 -32.274909, 149.270067 -32.277155)), ((149.23638 -32.238977, 149.23638 -32.252451, 149.240872 -32.252451, 149.240872 -32.254697, 149.243118 -32.254697, 149.243118 -32.252451, 149.247609 -32.252451, 149.247609 -32.250206, 149.254347 -32.250206, 149.254347 -32.252451, 149.256592 -32.252451, 149.256592 -32.245714, 149.254347 -32.245714, 149.254347 -32.243468, 149.249855 -32.243468, 149.249855 -32.238977, 149.23638 -32.238977), (149.240872 -32.243468, 149.243118 -32.243468, 149.243118 -32.250206, 149.240872 -32.250206, 149.240872 -32.243468)), ((149.256592 -32.252451, 149.256592 -32.259189, 149.258838 -32.259189, 149.258838 -32.261435, 149.26333 -32.261435, 149.26333 -32.259189, 149.265576 -32.259189, 149.265576 -32.261435, 149.272313 -32.261435, 149.272313 -32.259189, 149.270067 -32.259189, 149.270067 -32.254697, 149.26333 -32.254697, 149.26333 -32.252451, 149.256592 -32.252451)))"
 ]
}

 The dataset includes 473 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065817-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26564805
title: Additional file 6 of Gancao Nourishing-Yin decoction combined with methotrexate in treatment of aging CIA mice: a study based on DIA proteomic analysis

description: Additional file 6. DEPs and their enriched KEGG pathways of GCNY vs. CIA + Dgal mice.
DOI: 10.34740/kaggle/dsv/9171154
title: AutoXGB
DOI: 10.34740/kaggle/dsv/9171155
title: OnlineFree
DOI: 10.6084/m9.figshare.22827012.v1
title: Additional file 4 of Multi-label transcriptional classification of colorectal cancer reflects tumor cell population heterogeneity

description: Additional file 4: Table S4. NTP-based multiCRIS classification of the RNA-seq bulk profiles of TCGA samples. Summary table of results with the number of samples with single-label class CRIS, multi-label class CRIS, and not primary assignment, primary assignment and any assignment.
DOI: 10.6084/m9.figshare.22827036.v1
title: Additional file 12 of Multi-label transcriptional classification of colorectal cancer reflects tumor cell population heterogeneity

description: Additional file 12: Table S11. NTP-based multiCRIS classification on pseudo-bulk CRC patients. NTP analysis has been performed on CRC patients data identifying sample with Single-label CRIS classification, Multi-labels CRIS classification, and Not classification. For classassignmentby NTP, FDR &lt; 0.2 was considered significant.
DOI: 10.6084/m9.figshare.22827042
title: Additional file 14 of Multi-label transcriptional classification of colorectal cancer reflects tumor cell population heterogeneity

description: Additional file 14: Table S13. Single-label performance evaluations of the considered algorithms on testing data, comparing their results with the ones of the original NTP approach.
DOI: 10.6084/m9.figshare.22827042.v1
title: Additional file 14 of Multi-label transcriptional classification of colorectal cancer reflects tumor cell population heterogeneity

description: Additional file 14: Table S13. Single-label performance evaluations of the considered algorithms on testing data, comparing their results with the ones of the original NTP approach.
DOI: 10.6084/m9.figshare.22827048.v1
title: Additional file 16 of Multi-label transcriptional classification of colorectal cancer reflects tumor cell population heterogeneity

description: Additional file 16: Table S15. Multi-label assignments of the algorithm-adapted LSVM on TCGA testing samples, compared with multi-label assignments from the multiCRIS version of the NTP approach.
DOI: 10.6084/m9.figshare.22827054.v1
title: Additional file 18 of Multi-label transcriptional classification of colorectal cancer reflects tumor cell population heterogeneity

description: Additional file 18: Table S17. Genes selected based on feature importance.
DOI: 10.6084/m9.figshare.22827009
title: Additional file 3 of Multi-label transcriptional classification of colorectal cancer reflects tumor cell population heterogeneity

description: Additional file 3: Table S3. Numbers and percentage of CRIS call assignments with different BH.FDR thresholds.
DOI: 10.6084/m9.figshare.26589429
title: Additional file 8 of CRISPR-cas9 screening identified lethal genes enriched in Hippo kinase pathway and of predictive significance in primary low-grade glioma

description: Additional file 8. A list of DEGs, growth-suppressing-genes and growth-promoting-genes.
DOI: 10.6084/m9.figshare.26589429.v1
title: Additional file 8 of CRISPR-cas9 screening identified lethal genes enriched in Hippo kinase pathway and of predictive significance in primary low-grade glioma

description: Additional file 8. A list of DEGs, growth-suppressing-genes and growth-promoting-genes.
DOI: 10.6084/m9.figshare.26564901.v1
title: Additional file 1 of The-state-of-the-art of soft robotics to assist mobility: a review of physiotherapist and patient identified limitations of current lower-limb exoskeletons and the potential soft-robotic solutions

description: Additional file 1. Additional figures and tables.