cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ehc2c9
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Crinum asiaticum L."
 ]
}

 The dataset includes 53 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065093-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pma8uv
title: Occurrence Download

description: A dataset containing 478 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Philippines, Indonesia, Singapore, Chinese Taipei, Japan, Malaysia, China, Korea, Republic of)",
 "TaxonKey is Elysia marginata (Pease, 1871)"
 ]
}

 The dataset includes 478 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065094-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15521121
title: Multiome single-cell RNA and ATAC sequencing from Young and Old Hematopoietic Stem Cells (HSCs)

description: This repository contains all processed files used to generate figures in our manuscript. The study incorporates single-cell RNA-seq, ATAC-seq, and CITE-seq data from mouse and human bone marrow, highlighting distinct chromatin and epigenetic states during hematopoietic aging which dictate multilineage potential.

We integrated and analyzed multiple datasets to profile hematopoietic stem cells (LT-HSCs) across modalities and species. This includes:





Mouse multiome single-cell RNA- and ATAC-seq from young and old HSCs (this study; GSE246464). HSCs from from Young (8-10 week-old ) and Old (22-23-month-old) C57BL/6 mice were Fluoroscent-Activated Sorted based on immunophenotypic definition (Lineage-CD34-CD48-CD150+LSK). 




Mouse CITE-seq (Solomon et al. JEM 2024; GSE243197)




Human bone marrow scRNA-seq from young and old donors (Sommarin et al. Biorxiv 2021)
DOI: 10.5281/zenodo.15521122
title: Multiome single-cell RNA and ATAC sequencing from Young and Old Hematopoietic Stem Cells (HSCs)

description: This repository contains all processed files used to generate figures in our manuscript. The study incorporates single-cell RNA-seq, ATAC-seq, and CITE-seq data from mouse and human bone marrow, highlighting distinct chromatin and epigenetic states during hematopoietic aging which dictate multilineage potential.

We integrated and analyzed multiple datasets to profile hematopoietic stem cells (LT-HSCs) across modalities and species. This includes:





Mouse multiome single-cell RNA- and ATAC-seq from young and old HSCs (this study; GSE246464). HSCs from from Young (8-10 week-old ) and Old (22-23-month-old) C57BL/6 mice were Fluoroscent-Activated Sorted based on immunophenotypic definition (Lineage-CD34-CD48-CD150+LSK). 




Mouse CITE-seq (Solomon et al. JEM 2024; GSE243197)




Human bone marrow scRNA-seq from young and old donors (Sommarin et al. Biorxiv 2021)
DOI: 10.17617/3.ooc1bx
title: Data and code associated with "The evolution of male-female dominance relations in primate societies"

description: The files included in this repository contain the data and scripts required for the analyses presented in Huchard, Kappeler, Smit, Fichtel, Lukas (PNAS 2025) "The evolution of male-female dominance relations in primate societies". Please see the article for full details on the methods. 

To repeat the analyses, download the files to a local folder on your computer. Place files 2-9 (files ending in .r) into a subfolder called "AnalysisCode" and files 10-13 (files ending in csv, txt, tre) into a subfolder called "data". Open the rmarkdown file Code_IntersexDominance.Rmd in the main folder and run the code. This markdown file refers to the data that is provided in the "data" folder and loads the additional code files from the "AnalysisCode" folder. Results will be saved as csv files in the "results" folder, and figures will be saved as pdf files in the "figures" folder. For file structure see https://github.com/dieterlukas/primate_power

Description of the files: 
1) Code_IntersexDominance.Rmd: the annotated file to run the code to repeat the analyses presented in the manuscript
2) FemaleDominance_LoadData.r: script to load and prepare the data
3) FemaleDominance_PhylogeneticSignal.r: script to calculate the phylogenetic signal in the outcome variables
4) FemaleDominance_FunctionsPairwise.r: script that defines the statistical model for the pairwise analyses
5) FemaleDominance_Multivariate.r: script that defines the statistical model for the multivariate analyses
6) FemaleDominance_Figures.r: script to generate the figures
7) FemaleDominance_PrepareTablesPairwise.r: script to generate the output tables
8) FemaleDominance_VariationWithinSpecies.r: additional script to investigate variation in the outcome variables
9) FemaleDominance_Allometric.r: script for alternative analyses for allometric predictor variables
10) PrimatePhylogeny_IntersexDominance.tre: the phylogenetic tree in nexus format
11) PopulationData_IntersexDominance.csv: the data on the population level
12) SpeciesLevelPredictors_IntersexDominance.txt: the data for the species level predictor variables
13) VariableDescriptions_IntersexualDominance.txt: meta data describing all variables and their references
description: R, 4.2.2
DOI: 10.5281/zenodo.15721288
title: sessilanthera_latifolia_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.15721289
title: sessilanthera_latifolia_zanfona_1.fasta.gz
DOI: 10.15468/dl.dew62p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Desmidium C.Agardh ex Ralfs, 1848",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.6372 -28.0032,16.2782 -28.5786,20.509 -28.5786,20.509 -24.0715,15.4933 -24.0715,15.4945 -24.1257,16.0509 -25.6631,15.6372 -28.0032))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065096-250525065834625/datasets/export for details.
DOI: 10.15468/dl.3tt33h
title: Occurrence Download

description: A dataset containing 14455398 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 14455398 records from 1418 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065077-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7g23e
title: Occurrence Download

description: A dataset containing 347 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Porlieria chilensis I.M.Johnst."
 ]
}

 The dataset includes 347 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0277002-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aaa3i8
title: Occurrence Download

description: A dataset containing 724668 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polypodiaceae"
 ]
}

 The dataset includes 724668 records from 1142 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001640-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.umt7pm
title: Occurrence Download

description: A dataset containing 540200 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selasphorus sasin (R.Lesson, 1829)"
 ]
}

 The dataset includes 540200 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015591-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6y7sty
title: Occurrence Download

description: A dataset containing 1524 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "TaxonKey is Caulerpa J.V.F.Lamouroux, 1809"
 ]
}

 The dataset includes 1524 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0325380-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rvj86z
title: Occurrence Download

description: A dataset containing 2413 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Utricularia foliosa L."
 ]
}

 The dataset includes 2413 records from 153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001644-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5m8qca
title: Occurrence Download

description: A dataset containing 175 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Argyroderma fissum (Haw.) L.Bolus"
 ]
}

 The dataset includes 175 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015592-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.huoxlm
title: Occurrence Download

description: A dataset containing 21281 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Araucariaceae"
 ]
}

 The dataset includes 21281 records from 383 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001654-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/9lb-5ct-atn
title: Anemone ranunculoides L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/17t-07c-aw5
title: Aconitum lycoctonum subsp. vulparia (Rchb.) Ces.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/751-z0f-bj0
title: Geranium phaeum subsp. phaeum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/w4w-jwe-w0c
title: Anemone ranunculoides L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/n7z-299-2x6
title: Salix conimbricensis Rothm.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/nnt-ecl-kja
title: Corylus maxima Mill.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/w6z-s6g-x39
title: Aconitum napellus var. napellus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/96k-wjl-r10
title: Anemone nemorosa L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/myp-g3e-8z8
title: Cypripedium calceolus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/nda-h90-ccg
title: Campanula cervicaria L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/lsg-ezk-dr4
title: Campanula cervicaria L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ntj-9ap-zwb
title: Nepeta grandiflora M. Bieb.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/xmz-fv8-tkk
title: Anemone baldensis L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.xy6wq3
title: Occurrence Download

description: A dataset containing 131116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tracheophyta)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((97.5 45,105 45,105 52.5,97.5 52.5,97.5 45))"
 ]
}

 The dataset includes 131116 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036067-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/dnj-y6s-aet
title: Salix euxina I. V. Belyaeva

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/s2m-eag-0xq
title: Astrantia carniolica Wulfen

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/v0y-5xa-rcj
title: Polycarpon tetraphyllum subsp. tetraphyllum (L.) L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ajp-n15-7j8
title: Nepeta nuda L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/pmm-ale-eww
title: Carex parviflora Host

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/str-z7w-srh
title: Cypripedium calceolus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/4g7-d3m-b6m
title: Aconitum degenii var. turrachense (Mucher) Mucher

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rns-fw9-d6y
title: Anemone nemorosa L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/34z-edy-xg7
title: Corylus maxima Mill.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/btm-lab-nt5
title: Carex parviflora Host

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/gxr-6lc-xhz
title: Cypripedium calceolus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/33c-qqs-a0f
title: Stachys recta L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/n99-sq7-6va
title: Herniaria glabra subsp. nebrodensis Jan ex Nyman

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/wrr-3mb-pg6
title: Stachys recta L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/lr6-yqq-4hk
title: Astrantia carniolica Wulfen

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rhw-zns-6xd
title: Astrantia carniolica Wulfen

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ywj-de9-gbq
title: Cypripedium calceolus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/dsc-j0c-vel
title: Aconitum lycoctonum subsp. vulparia (Rchb.) Ces.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/mlq-lpa-qwf
title: Hypericum perforatum subsp. veronense (Schrank) Ces.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/pvq-jvd-k8m
title: Campanula cervicaria L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/0w2-4cq-zgq
title: Carex parviflora Host

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/n4b-jjm-83g
title: Corchorus olitorius L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ct9-mfh-yw7
title: Potamogeton pusillus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/lfs-zqj-te1
title: Persicaria lapathifolia subsp. pallida (With.) Á. Löve

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/p9l-asp-0hx
title: Anemonastrum narcissiflorum (L.) Holub

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/36m-qys-lxj
title: Carex bigelowii subsp. dacica (Heuff.) T. V. Egorova

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/5ad-3yy-r76
title: Clinopodium nepeta (L.) Kuntze

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/mrj-w2g-h51
title: Anemonastrum narcissiflorum (L.) Holub

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/mnp-p7z-y08
title: Rubus thelybatos Focke ex Caflisch

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/myp-x91-ekx
title: Campanula cervicaria L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/xd2-gfn-9cp
title: Clematis alpina (L.) Mill.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/3r7-e6j-whw
title: Rubus clusii Borbás

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/q7a-tw7-6v4
title: Alphitomorpha depressa var. artemisiae Wallr.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/gsa-3p8-1e9
title: Stellaria palustris Retz.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/m8q-qrg-ene
title: Myricaria germanica (L.) Desv.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/xvm-g6s-wb6
title: Pulsatilla styriaca (Pritz.) Simonk.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/k35-kca-82c
title: Aconitum ranunculifolium Rchb.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/nlv-tla-4lv
title: Astrantia major L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/vac-hfa-yf4
title: Anemone nemorosa L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/4nz-5rd-t4v
title: Anemone trifolia L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/dt0-a9x-l2d
title: Campanula cervicaria L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/we6-1rq-r4s
title: Cypripedium calceolus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/aqe-c0m-4as
title: Clinopodium nepeta (L.) Kuntze

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/fy0-a3w-elf
title: Anemone nemorosa L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/vmq-g73-0v7
title: Anemone nemorosa L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/7je-6zt-4k7
title: Anemonastrum narcissiflorum (L.) Holub

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/c0v-qrj-6hj
title: Aconitum tauricum subsp. latemarense (Degen & Gáyer) Starm.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/wm1-v2g-kal
title: Campanula cervicaria L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/f1q-tas-ed1
title: Meum athamanticum Jacq.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/fdp-fk5-7qq
title: Aconitum lycoctonum subsp. vulparia (Rchb.) Ces.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/waz-sal-5d4
title: Carex acutiformis Ehrh.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/37x-bxy-xs7
title: Cypripedium calceolus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/b5y-6fm-bv9
title: Carex parviflora Host

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/hqg-m4a-sl2
title: Ulmus minor Mill.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ft2-z03-ewk
title: Ulmus minor Mill.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/w0h-ntv-6rc
title: Cypripedium calceolus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/22t-d0p-h7b
title: Rhamnus utilis Decne.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/6gx-2q5-5d2
title: Anemone baldensis L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/mvc-205-xjv
title: Cypripedium calceolus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/yxr-wbz-hky
title: Astrantia carniolica Wulfen

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/6nv-jvd-czz
title: Campanula cervicaria L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/bmy-kn9-gtf
title: Anemone nemorosa L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/yes-51h-dls
title: Cypripedium calceolus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/7b0-ftw-fk2
title: Pulsatilla styriaca (Pritz.) Simonk.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/str-zsa-skl
title: Anemonastrum narcissiflorum (L.) Holub

description: Digital Specimen for the physical specimen hosted at University of Graz.