cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3783600
title: Dynamic Universe Model solves “Faster than Light Neutrinos” riddle.

description: <b>Abstract:</b> There are many instances that reported Superluminal neutrinos. Dynamic Universe Model explains the how and why of “Faster than Light Neutrinos” without any modification in its theory. Various instances like Astronomical jets, Gravitational catapult, MINOS experiment and Fermilab1979 in particle experiments and supernova SN1987A and Gamma Ray Bursts (GRBs) in astronomy Neutrinos travelling faster than speed of light were recorded. There were 76 theoretical experiments conducted and their results are reported in this paper. These experiments were done between 2009 to 2011. Dynamic Universe Model theory was tested in explaining many anomalies in Physics. Dynamic Universe Model’s many predictions came true. <b> </b>
DOI: 10.6084/m9.figshare.3783600.v1
title: Dynamic Universe Model solves “Faster than Light Neutrinos” riddle.

description: <b>Abstract:</b> There are many instances that reported Superluminal neutrinos. Dynamic Universe Model explains the how and why of “Faster than Light Neutrinos” without any modification in its theory. Various instances like Astronomical jets, Gravitational catapult, MINOS experiment and Fermilab1979 in particle experiments and supernova SN1987A and Gamma Ray Bursts (GRBs) in astronomy Neutrinos travelling faster than speed of light were recorded. There were 76 theoretical experiments conducted and their results are reported in this paper. These experiments were done between 2009 to 2011. Dynamic Universe Model theory was tested in explaining many anomalies in Physics. Dynamic Universe Model’s many predictions came true. <b> </b>
DOI: 10.6084/m9.figshare.3779637
title: needham.isme.poster.2016_9.pdf

description: ISME 2016 Poster
DOI: 10.6084/m9.figshare.3779637.v1
title: needham.isme.poster.2016_9.pdf

description: ISME 2016 Poster
DOI: 10.6084/m9.figshare.3777684
title: Forecasting Generalized Quantiles of Electricity Demand: A Functional Data Approach

description: Electricity load forecasts are an integral part of many decision-making processes in the electricity market. However, most literature on electricity load forecasting concentrates on deterministic forecasts, neglecting possibly important information about uncertainty. A more complete picture of future demand can be obtained by using distributional forecasts, allowing for more efficient decision-making. A predictive density can be fully characterized by tail measures such as quantiles and expectiles. Furthermore, interest often lies in the accurate estimation of tail events rather than in the mean or median. We propose a new methodology to obtain probabilistic forecasts of electricity load that is based on functional data analysis of generalized quantile curves. The core of the methodology is dimension reduction based on functional principal components of tail curves with dependence structure. The approach has several advantages, such as flexible inclusion of explanatory variables like meteorological forecasts and no distributional assumptions. The methodology is applied to load data from a transmission system operator (TSO) and a balancing unit in Germany. Our forecast method is evaluated against other models including the TSO forecast model. It outperforms them in terms of mean absolute percentage error and mean squared error. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.3777684.v2
title: Forecasting Generalized Quantiles of Electricity Demand: A Functional Data Approach

description: Electricity load forecasts are an integral part of many decision-making processes in the electricity market. However, most literature on electricity load forecasting concentrates on deterministic forecasts, neglecting possibly important information about uncertainty. A more complete picture of future demand can be obtained by using distributional forecasts, allowing for more efficient decision-making. A predictive density can be fully characterized by tail measures such as quantiles and expectiles. Furthermore, interest often lies in the accurate estimation of tail events rather than in the mean or median. We propose a new methodology to obtain probabilistic forecasts of electricity load that is based on functional data analysis of generalized quantile curves. The core of the methodology is dimension reduction based on functional principal components of tail curves with dependence structure. The approach has several advantages, such as flexible inclusion of explanatory variables like meteorological forecasts and no distributional assumptions. The methodology is applied to load data from a transmission system operator (TSO) and a balancing unit in Germany. Our forecast method is evaluated against other models including the TSO forecast model. It outperforms them in terms of mean absolute percentage error and mean squared error. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.3777684.v1
title: Forecasting Generalized Quantiles of Electricity Demand: A Functional Data Approach<sup>*</sup>

description: Electricity load forecasts are an integral part of many decision-making processes in the electricity market. However, most literature on electricity load forecasting concentrates on deterministic forecasts, neglecting possibly important information about uncertainty. A more complete picture of future demand can be obtained by using distributional forecasts, allowing for more efficient decision-making. A predictive density can be fully characterized by tail measures such as quantiles and expectiles. Furthermore, interest often lies in the accurate estimation of tail events rather than in the mean or median. We propose a new methodology to obtain probabilistic forecasts of electricity load that is based on functional data analysis of generalized quantile curves. The core of the methodology is dimension reduction based on functional principal components of tail curves with dependence structure. The approach has several advantages, such as flexible inclusion of explanatory variables like meteorological forecasts and no distributional assumptions. The methodology is applied to load data from a transmission system operator (TSO) and a balancing unit in Germany. Our forecast method is evaluated against other models including the TSO forecast model. It outperforms them in terms of mean absolute percentage error and mean squared error. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.3776655
title: DNA methylation profiling in human lung tissue identifies genes associated with COPD

description: Chronic obstructive pulmonary disease (COPD) is a smoking-related disease characterized by genetic and phenotypic heterogeneity. Although association studies have identified multiple genomic regions with replicated associations to COPD, genetic variation only partially explains the susceptibility to lung disease, and suggests the relevance of epigenetic investigations. We performed genome-wide DNA methylation profiling in homogenized lung tissue samples from 46 control subjects with normal lung function and 114 subjects with COPD, all former smokers. The differentially methylated loci were integrated with previous genome-wide association study results. The top 535 differentially methylated sites, filtered for a minimum mean methylation difference of 5% between cases and controls, were enriched for CpG shelves and shores. Pathway analysis revealed enrichment for transcription factors. The top differentially methylated sites from the intersection with previous GWAS were in <i>CHRM1, GLT1D1</i>, and <i>C10orf11</i>; sorted by GWAS <i>P</i>-value, the top sites included <i>FRMD4A, THSD4</i>, and <i>C10orf11</i>. Epigenetic association studies complement genetic association studies to identify genes potentially involved in COPD pathogenesis. Enrichment for genes implicated in asthma and lung function and for transcription factors suggests the potential pathogenic relevance of genes identified through differential methylation and the intersection with a broader range of GWAS associations.
DOI: 10.6084/m9.figshare.3776655.v1
title: DNA methylation profiling in human lung tissue identifies genes associated with COPD

description: Chronic obstructive pulmonary disease (COPD) is a smoking-related disease characterized by genetic and phenotypic heterogeneity. Although association studies have identified multiple genomic regions with replicated associations to COPD, genetic variation only partially explains the susceptibility to lung disease, and suggests the relevance of epigenetic investigations. We performed genome-wide DNA methylation profiling in homogenized lung tissue samples from 46 control subjects with normal lung function and 114 subjects with COPD, all former smokers. The differentially methylated loci were integrated with previous genome-wide association study results. The top 535 differentially methylated sites, filtered for a minimum mean methylation difference of 5% between cases and controls, were enriched for CpG shelves and shores. Pathway analysis revealed enrichment for transcription factors. The top differentially methylated sites from the intersection with previous GWAS were in <i>CHRM1, GLT1D1</i>, and <i>C10orf11</i>; sorted by GWAS <i>P</i>-value, the top sites included <i>FRMD4A, THSD4</i>, and <i>C10orf11</i>. Epigenetic association studies complement genetic association studies to identify genes potentially involved in COPD pathogenesis. Enrichment for genes implicated in asthma and lung function and for transcription factors suggests the potential pathogenic relevance of genes identified through differential methylation and the intersection with a broader range of GWAS associations.
DOI: 10.6084/m9.figshare.3775821
title: Publications linking biodiversity and ecosystem services 2001-2014

description: Dataset of 585 papers published between 2001 and 2014 that relate biodiversity and ecosystem services.<br>These data support Ricketts et al. 2016. <i>Nature Communications.</i> DOI 10.1038/NCOMMS13106. Search criteria to assemble the dataset and coding rules used to code attributes of each paper are described in that paper.
DOI: 10.6084/m9.figshare.3774396
title: Sensory Motor Synchronization Data (Fixed Amplitude)

description: These data were used in preparation of a manuscript for PLOS One.
DOI: 10.6084/m9.figshare.3774396.v1
title: Sensory Motor Synchronization Data (Fixed Amplitude)

description: These data were used in preparation of a manuscript for PLOS One.
DOI: 10.6084/m9.figshare.3774048
title: Arnold Tongue Data

description: These data were used in preparation of a manuscript submitted to PLOS One.
DOI: 10.6084/m9.figshare.3773109
title: A subset of CMU motion capture database

description: <b>This is an index of subset in CMU motion database. The corresponding ‘*.bvh’ files can be downloaded from http://mocap.cs.cmu.edu/ . Please cite this paper: </b><b>Qinkun Xiao</b>, Junfang Li, Qinhan Xiao. “Human Motion Capture Data Retrieval Based on Quaternion and EMD”. <i>International Conference on Intelligent Human-Machine Systems and Cybernetics</i>, v 1, 2013, pp. 517–520.
DOI: 10.6084/m9.figshare.3767976
title: Asynchronous fate decisions at the single cell level collectively ensure a consistent lineage composition in the mouse blastocyst - Raw images

description: Original confocal microscopy z-stacks for all embryos in the study (in Zeiss .lsm format). Corresponding segmented images (as .tiff files), as well as raw and corrected data tables with the data extracted from the segmented images are provided.
DOI: 10.6084/m9.figshare.3773109.v1
title: index_cmu300.mat

description: <b>This is an index of subset in CMU motion database. The corresponding ‘*.bvh’ files can be downloaded from http://mocap.cs.cmu.edu/ </b>
DOI: 10.6084/m9.figshare.3767976.v1
title: Raw images for Saiz et al 2016

description: Original confocal microscopy z-stacks for all embryos in the study (in Zeiss .lsm format). Corresponding segmented images (as .tiff files), as well as raw and corrected data tables with the data extracted from the segmented images are provided.
DOI: 10.6084/m9.figshare.3767976.v2
title: Raw images for Saiz et al 2016

description: Original confocal microscopy z-stacks for all embryos in the study (in Zeiss .lsm format). Corresponding segmented images (as .tiff files), as well as raw and corrected data tables with the data extracted from the segmented images are provided.
DOI: 10.6084/m9.figshare.3767976.v3
title: Raw images for Saiz et al 2016

description: Original confocal microscopy z-stacks for all embryos in the study (in Zeiss .lsm format). Corresponding segmented images (as .tiff files), as well as raw and corrected data tables with the data extracted from the segmented images are provided.
DOI: 10.6084/m9.figshare.3767976.v4
title: Raw images for Saiz et al 2016

description: Original confocal microscopy z-stacks for all embryos in the study (in Zeiss .lsm format). Corresponding segmented images (as .tiff files), as well as raw and corrected data tables with the data extracted from the segmented images are provided.
DOI: 10.6084/m9.figshare.3767976.v5
title: Raw images for Saiz et al 2016

description: Original confocal microscopy z-stacks for all embryos in the study (in Zeiss .lsm format). Corresponding segmented images (as .tiff files), as well as raw and corrected data tables with the data extracted from the segmented images are provided.
DOI: 10.6084/m9.figshare.3767976.v6
title: Raw images for Saiz et al 2016

description: Original confocal microscopy z-stacks for all embryos in the study (in Zeiss .lsm format). Corresponding segmented images (as .tiff files), as well as raw and corrected data tables with the data extracted from the segmented images are provided.
DOI: 10.6084/m9.figshare.3767976.v7
title: Raw images for Saiz et al 2016

description: Original confocal microscopy z-stacks for all embryos in the study (in Zeiss .lsm format). Corresponding segmented images (as .tiff files), as well as raw and corrected data tables with the data extracted from the segmented images are provided.
DOI: 10.6084/m9.figshare.3767976.v8
title: Raw images for Saiz et al 2016

description: Original confocal microscopy z-stacks for all embryos in the study (in Zeiss .lsm format). Corresponding segmented images (as .tiff files), as well as raw and corrected data tables with the data extracted from the segmented images are provided.
DOI: 10.6084/m9.figshare.3767976.v10
title: Asynchronous fate decisions at the single cell level collectively ensure a consistent lineage composition in the mouse blastocyst - Raw images

description: Original confocal microscopy z-stacks for all embryos in the study (in Zeiss .lsm format). Corresponding segmented images (as .tiff files), as well as raw and corrected data tables with the data extracted from the segmented images are provided.
DOI: 10.6084/m9.figshare.3767976.v9
title: Raw images for Saiz et al 2016

description: Original confocal microscopy z-stacks for all embryos in the study (in Zeiss .lsm format). Corresponding segmented images (as .tiff files), as well as raw and corrected data tables with the data extracted from the segmented images are provided.
DOI: 10.6084/m9.figshare.3767976.v11
title: Asynchronous fate decisions at the single cell level collectively ensure a consistent lineage composition in the mouse blastocyst - Raw images

description: Original confocal microscopy z-stacks for all embryos in the study (in Zeiss .lsm format). Corresponding segmented images (as .tiff files), as well as raw and corrected data tables with the data extracted from the segmented images are provided.
DOI: 10.6084/m9.figshare.3767394
title: Meta-analysis data of web structures and deer browsing

description: Data for PeerJ manuscript<br>
DOI: 10.6084/m9.figshare.3767394.v1
title: Meta-analysis data of web structures and deer browsing

description: Data for PeerJ manuscript<br>
DOI: 10.6084/m9.figshare.3767307
title: Significant differentially expressed genes in the brains of harbor seals with a possible metabolic disease

description: To determine differentially expressed genes (DEGs) between animals infected with PhV-1 and those with an unknown cause of death (UCD), counts per transcript were analyzed using the R version 3.2.2 with software packages Bioconductor 3.1 and DESeq2-1.8.2. For each gene, DESeq2 fits a log generalized linear model with a negative binomial distribution and normalizes genes counts (23). Transcripts were significantly different if they had at least an adjusted p-value ≤ 0.05. Importantly, since in this study we are comparing two diseases with no true control samples, a positive log fold change was considered up-regulated in UCD samples, while if the log fold change was negative it was considered up-regulated in PhV-1 infected samples.
DOI: 10.6084/m9.figshare.3767307.v1
title: Significant differentially expressed genes in the brains of harbor seals with a possible metabolic disease

description: To determine differentially expressed genes (DEGs) between animals infected with PhV-1 and those with an unknown cause of death (UCD), counts per transcript were analyzed using the R version 3.2.2 with software packages Bioconductor 3.1 and DESeq2-1.8.2. For each gene, DESeq2 fits a log generalized linear model with a negative binomial distribution and normalizes genes counts (23). Transcripts were significantly different if they had at least an adjusted p-value ≤ 0.05. Importantly, since in this study we are comparing two diseases with no true control samples, a positive log fold change was considered up-regulated in UCD samples, while if the log fold change was negative it was considered up-regulated in PhV-1 infected samples.
DOI: 10.6084/m9.figshare.3766986
title: Significant differentially expressed genes in the brains of harbor seals with a Phocine herpesvirus-1 infection in the brain.

description: To determine differentially expressed genes (DEGs) between animals infected with PhV-1 and those with an unknown cause of death (UCD), counts per transcript were analyzed using the R version 3.2.2 with software packages Bioconductor 3.1 and DESeq2-1.8.2. For each gene, DESeq2 fits a log generalized linear model with a negative binomial distribution and normalizes genes counts (23). Transcripts were significantly different if they had at least an adjusted p-value ≤ 0.05. Importantly, since in this study we are comparing two diseases with no true control samples, a positive log fold change was considered up-regulated in UCD samples, while if the log fold change was negative it was considered up-regulated in PhV-1 infected samples.
DOI: 10.6084/m9.figshare.3766986.v1
title: Significant differentially expressed genes in the brains of harbor seals with a Phocine herpesvirus-1 infection in the brain.

description: To determine differentially expressed genes (DEGs) between animals infected with PhV-1 and those with an unknown cause of death (UCD), counts per transcript were analyzed using the R version 3.2.2 with software packages Bioconductor 3.1 and DESeq2-1.8.2. For each gene, DESeq2 fits a log generalized linear model with a negative binomial distribution and normalizes genes counts (23). Transcripts were significantly different if they had at least an adjusted p-value ≤ 0.05. Importantly, since in this study we are comparing two diseases with no true control samples, a positive log fold change was considered up-regulated in UCD samples, while if the log fold change was negative it was considered up-regulated in PhV-1 infected samples.
DOI: 10.6084/m9.figshare.3766254
title: Monthly tweets - Project VALKYRIE

description: Integration between Jekyll and Twitter through jekyll-twitter-plugin created by Robert Murray. Unfortunately, Github does not permit this plugin, but this was bypassed serving the page locally and retrieving the html files - voilà!(excerpt)
DOI: 10.6084/m9.figshare.3766254.v2
title: Monthly tweets - Project VALKYRIE

description: Integration between Jekyll and Twitter through jekyll-twitter-plugin created by Robert Murray. Unfortunately, Github does not permit this plugin, but this was bypassed serving the page locally and retrieving the html files - voilà!(excerpt)
DOI: 10.6084/m9.figshare.3766254.v1
title: Monthly tweets

description: Integration between Jekyll and Twitter through jekyll-twitter-plugin created by Robert Murray. Unfortunately, Github does not permit this plugin, but this was bypassed serving the page locally and retrieving the html files - voilà!(excerpt)
DOI: 10.6084/m9.figshare.3764571
title: A workflow to open clinical science

description: <br>At this point we can sketch a workflow for the open science clinical trial notebook. This workflow is not intended for everyone and should not replace any established to-do routine unless this will conform with the objectives of the beholder. This is an example, not a recipe. First, writing of experimental notes, personal remarks, team discussions, brainstorm sessions, consensus, bibliographic research, external authoritative opinions, invited specialist overseeing, tabulated results, statistic calculations, preliminary academic writings, preprint fragments, draft papers, essentially any piece of textual content, even asset manifestos and shopping lists. Any textual production should be written in plain, ascii or equivalent non-formated text. Format of file to write can be just .txt, or full blown Markdown (.md or .markdown) or any equivalent. Data must be rigorously de-identified, and extra steps must be taken in order to avoid secondary re-identification. If one needs to maintain identified records (as is often the case), they must be kept in traditional ways, safely secured.(excerpt)
DOI: 10.6084/m9.figshare.3764571.v1
title: A workflow to open clinical science

description: <br>At this point we can sketch a workflow for the open science clinical trial notebook. This workflow is not intended for everyone and should not replace any established to-do routine unless this will conform with the objectives of the beholder. This is an example, not a recipe. First, writing of experimental notes, personal remarks, team discussions, brainstorm sessions, consensus, bibliographic research, external authoritative opinions, invited specialist overseeing, tabulated results, statistic calculations, preliminary academic writings, preprint fragments, draft papers, essentially any piece of textual content, even asset manifestos and shopping lists. Any textual production should be written in plain, ascii or equivalent non-formated text. Format of file to write can be just .txt, or full blown Markdown (.md or .markdown) or any equivalent. Data must be rigorously de-identified, and extra steps must be taken in order to avoid secondary re-identification. If one needs to maintain identified records (as is often the case), they must be kept in traditional ways, safely secured.(excerpt)
DOI: 10.6084/m9.figshare.3764490
title: Diagnóstico y viabilidad económica de actividades productivas en la Reserva de la Biosfera Pantanos de Centla: informe técnico final

description: Diagnóstico rápido de actividades productivas, crecimiento demográfico y principales impactos ambientales por actividades antropogénicas identificados mediante observación en el año 2010-2012 en la Reserva de la Biosfera Pantanos de Centla.<br>