cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14420669.v2
title: Comparative genomics of tadpole shrimps (Crustacea, Branchiopoda, Notostraca): dynamic genome evolution against the backdrop of morphological stasis.

description: This analysis presents five genome assemblies of four Notostraca taxa. Notostraca origin dates back to the Permian/Upper Devonian and the extant forms show a striking morphological similarity to fossil taxa. The comparison of the sequenced genomes with other Branchiopoda genomes shows that, despite the morphological stasis, Notostraca share a dynamic genome evolution with high turnover for gene families’ expansion/contraction and transposable elements content comparable to other branchiopods. While Notostraca seem to be characterized by a lower genome-wide substitution rate in comparison to other branchiopods, a subset of genes shows a faster evolutionary pace compared to other branchiopods, highlighting the difficulty of generalizing about genomic stasis versus dynamism. Moreover, genome-wide nucleotide divergence analyses confirmed previous data on Triops and Lepidurus diversity, and the variation of Triops cancriformis transposable elements content appeared linked to reproductive strategies, in line with theoretical expectations. Overall, besides providing new genomic resources for the study of these organisms, which appear relevant for their ecology and evolution, we also confirmed the decoupling of morphological and molecular evolution.@font-face {font-family:"Cambria Math"; panose-1:2 4 5 3 5 4 6 3 2 4; mso-font-charset:0; mso-generic-font-family:roman; mso-font-pitch:variable; mso-font-signature:-536869121 1107305727 33554432 0 415 0;}@font-face {font-family:Cambria; panose-1:2 4 5 3 5 4 6 3 2 4; mso-font-charset:0; mso-generic-font-family:roman; mso-font-pitch:variable; mso-font-signature:-536869121 1107305727 33554432 0 415 0;}p.MsoNormal, li.MsoNormal, div.MsoNormal {mso-style-unhide:no; mso-style-qformat:yes; mso-style-parent:""; margin:0cm; mso-pagination:widow-orphan; font-size:12.0pt; font-family:"Cambria",serif; mso-ascii-font-family:Cambria; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:Cambria; mso-fareast-theme-font:minor-latin; mso-hansi-font-family:Cambria; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi; mso-fareast-language:EN-US;}.MsoChpDefault {mso-style-type:export-only; mso-default-props:yes; font-family:"Calibri",sans-serif; mso-ascii-font-family:Cambria; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:Cambria; mso-fareast-theme-font:minor-latin; mso-hansi-font-family:Cambria; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi; mso-fareast-language:EN-US;}div.WordSection1 {page:WordSection1;}
DOI: 10.6084/m9.figshare.8094524.v1
title: Dataset Glaucoma Symptom Scale

description: Results of the Serbian GSS
DOI: 10.15468/dl.rxrqqs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina silus (Ascanius, 1775)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((26.6413 -34.1504,26.9648 -34.0826,26.9648 -25.1504,17.9648 -25.1504,17.9648 -34.1504,26.6413 -34.1504))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013267-250525065834625/datasets/export for details.
DOI: 10.17632/f29cmgjdxt
title: National School Lunch Program Vegetable Intervention with Spices and Herbs

description: Raw data from the National School Lunch Program vegetable intervention with spices and herbs conducted at an urban, economically-underserved, and predominantly African-American high school Baltimore, Maryland. The addition of spices and herbs to the vegetables in this school-based nutrition intervention was associated with modest increases in student vegetable intake as compared to otherwise-identical typical vegetable recipes without spices and herbs (18.2% increase, 0.29 ounce, p&lt;0.0001).
DOI: 10.17632/ntjtg6wd5g
title: Climate change as a driver of food insecurity in the 2007 Lesotho-South Africa drought

description: This folder includes all datasets+codes to reproduce the results and figures in Verschuur et al. (2021), Climate change as a driver of food insecurity in the 2007 Lesotho-South Africa drought, Scientific Reports. 'Climate_bivariate_data' contains the climate model output and the codes to perform the compound drought analysis. 'Probabilistic_model' contains the code for the main model we adopt in out methodology including the input data (rainfall and agricultural data for SA and L). In the subfolder 'Output_L_SA' the results of the model are placed, which can be analysed. 'Household_data' contains the household summary statistics in terms of fieldsize and household size that we use for analysing household exposure to the drought.
DOI: 10.17632/vwznrr98b9
title: SAIOD Sikkim Aerial Images dataset for Object Detection

description: The SAIOD dataset is an aerial image dataset prepared by collecting images from Sikkim state located in the Himalayas, India, using a DJI Mavic Air drone. The terrain is diverse, including undulating surfaces, slopes, gorges, rivers, forests, and settlements. Ten classes of objects were identified for image classification, including buildings, cars, debris, footpaths, metalled roads, open fields, shadows, tanks, trees, and roofs.
DOI: 10.25452/figshare.plus.25614915.v1
title: 3-D human epidermal tissue cultures bulk RNA-Seq expression

description: This dataset corresponds to gene expression changed occurring in the formation of 3-D human epidermal raft cultures. Normal human epidermal keratinocytes were isolated from epidermis (n=3) and grown using J2-3T3 mouse fibroblasts as a feeder layer originally described by Rheinwald and Green53. 3-D human epidermal raft cultures seeded in collagen hydrogels were prepared using three distinct donor pools as described previously54 and grown at an air-liquid interface for 12 days in E-Medium (DMEM/DMEM-F12 (1:1), 5% Fetal Bovine Serum, adenine (180µM), Bovine pancreatic insulin (5µg/ml), Human apo- transferrin (5µg/ml), triiodothyronine (5µg/ml), L-Glutamine (4mM), Cholera toxin (10ng/ml), Gentamicin (10µg/ml), Amphotericin B (0.25µg/ml)). At day 9 at an air-liquid-interface to allow for epidermal maturation, the epidermal rafts (RHE) were treated with 0.1% BSA/phosphate-buffered saline (Sigma Aldrich, St Louis, MO) for 72 Hrs. Epidermal tissues were separated at the stages from Sub-confluent stage to 3-D raft on day 12 (Sub-confluent, Day 0-Confluent, Day 3-Confluent, Day 3-Raft, Day 6-Raft, Day 9-Raft, Day 12-Raft) from the collagen scaffold and lysed in QIAzol for RNA isolation. RNA samples were sent to the University of Michigan Advanced Genomics Core for RNA sequencing. Libraries for RNA-Seq were generated from polyadenylated RNA and sequenced at six libraries per lane on the Illumina Genome Analyzer IIx. We used Tophat2 to align RNA-seq reads to the human genome, using annotations of GENCODE as gene model. HTSeq was used to quantify gene expression levels. Normalization was performed by DESeq2.
DOI: 10.6084/m9.figshare.13376474.v1
title: Full Egg Puncture Data

description: The full data describing how much energy is required to puncture each eggshell under each condition in the experiment.
DOI: 10.6084/m9.figshare.27241077.v1
title: Supplementary Material for: Predictive value of serum hepcidin levels for the risk of incident end-stage kidney disease in patients with chronic kidney disease: The KNOW-CKD

description: Introduction: Despite the pivotal role of hepcidin in the development of anemia among the patients with chronic kidney disease (CKD), the association between serum hepcidin levels and CKD progression has been never investigated. We here hypothesized that elevation in serum hepcidin levels might be associated with the risk of incident end-stage kidney disease (ESKD) among the patients with pre-dialysis CKD. 
Methods: A total of 2,109 patients with pre-dialysis CKD at stages 1 to pre-dialysis 5 were categorized into the quartiles by serum hepcidin levels. The study outcome was incident ESKD. The median duration of follow-up was 7.9 years.
Results: The analysis of the baseline characteristics revealed that unfavorable clinical features were in general associated with higher serum hepcidin levels. The cumulative incidence of ESKD was significantly differed by serum hepcidin levels, with the highest incidence in the 4th quartile (P &lt; 0.001, by log-rank test). Cox regression analysis demonstrated that, compared to the 1st quartile, the risk of incident ESKD is significantly increased in the 4th quartile (adjusted hazard ratio 1.372, 95% confidence interval 1.070 to 1.759). Penalized spline curve analysis illustrated a linear, positive correlation between serum hepcidin levels and the risk of incident ESKD. Subgroup analyses revealed that the association is significantly more prominent in the patients with advanced CKD (i.e., estimated glomerular filtration rate &lt; 45 mL/min/1.73 m2).
Conclusion: Elevation in serum hepcidin levels is significantly associated with the risk of incident ESKD among the patients with pre-dialysis CKD.
DOI: 10.17632/3pgt34xkfv
title: Rose Image Classification Dataset

description: The Rose Image Classification dataset contains 445 high-quality images of roses, categorized by color. This dataset is ideal for machine learning tasks involving image classification, recognition, and other computer vision applications. Each image is labeled according to the color of the rose, allowing for the development of models that can accurately classify rose varieties based on visual features.

Number of Images: 445
Color:
Red Roses: 201 images
Yellow Roses: 58 images
White Roses: 85 images
Pink Roses: 93 images
DOI: 10.6084/m9.figshare.13551392.v1
title: Dryas reflectance spectra from two Wickersham Dome locations

description: Leaf reflectance spectra from Dryas ajanensis, Dryas alaskensis, and their hybrids from Eagle Summit. Refer to wda_pops.csv and wdb_pops.csv for metadata.
DOI: 10.6084/m9.figshare.20079028.v1
title: Roe deer tapetum relative reflectance spectra from Reindeer eyes seasonally adapt to ozone-blue Arctic twilight by tuning a photonic tapetum lucidum

description: These are the normalised spectral reflectance data appearing in Figure 4 E
DOI: 10.6084/m9.figshare.25061996.v4
title: Dados do Artigo "DE 1989 EM DIANTE: características e transformações da pesquisa em Comunicação e Política no Brasil nas últimas três décadas"

description: Dados do Artigo "DE 1989 EM DIANTE: características e transformações da pesquisa em Comunicação e Política no Brasil nas últimas três décadas"
DOI: 10.6084/m9.figshare.7531472.v2
title: Biomechanics data

description: Biomechanics date
DOI: 10.17632/3mt2h3f4cj
title: Household Finances, Debt Overhang and Consumption Patterns

description: This folder contains the codes and instructions necessary to access the data and reproduce the findings in Sala and Trivin (2024), Household Finances, Debt Overhang, and Consumption Patterns.
DOI: 10.17632/prt6gswb85
title: Teste

description: Aula de metodologia cientifica
19-05-205
-
--
--
DOI: 10.6084/m9.figshare.20222546.v1
title: Additional file 3 of Escape box and puzzle design as educational methods for engagement and satisfaction of medical student learners in emergency medicine: survey study

description: Additional file 3. Data set.
DOI: 10.6084/m9.figshare.4982240.v1
title: Exercise habits and factors associated with exercise in systemic sclerosis: a Scleroderma Patient-centered Intervention Network (SPIN) cohort study

description: <b>Objective:</b> Exercise is associated with improved health in many medical conditions. Little is known about the exercise habits of people with systemic sclerosis (SSc, or scleroderma). This study assessed the proportion of individuals with SSc who exercise and associations of demographic and disease variables with exercise. Additionally, the weekly amount of time spent exercising and the types of exercise performed were assessed among patients exercising. <b>Methods:</b> The sample consisted of adult participants with SSc enrolled in the Scleroderma Patient-centered Intervention Network (SPIN) Cohort who completed baseline questionnaires from March 2014 through August 2015. Baseline questionnaires included questions on exercise habits, physician-reported medical characteristics, self-report demographic characteristics, the Health Assessment Questionnaire-Disability Index, Patient Health Questionnaire-9, and Patient-Reported Outcomes Measurement Information System-29. <b>Results:</b> Of 752 patients, 389 (51.7%) reported presently engaging in exercise, and these patients exercised on average 4.7 h [standard deviation (SD) = 2.8] per week. Among patients who reported exercising, walking was most commonly reported (<i>n</i> = 295, 75.8%). In bivariate analyses, present exercise was associated with more education, lower body mass index, some (versus no) alcohol consumption, non-smoking, limited/sine disease subtype, absence of skin thickening, lower disability, higher physical function, lower symptoms of anxiety and depression, less fatigue, lower sleep disturbance, higher ability to participate in social roles and activities, and less pain. <b>Conclusions:</b> Approximately half of SSc patients reported that they are currently exercising with walking being the most common form of exercise. Understanding exercise patterns and factors associated with exercise will help better inform intervention programs to support exercise for patients with SSc.Implications for rehabilitationSystemic sclerosis is a rare autoimmune rheumatic disease associated with great morbidity and highly diverse presentation.Approximately half of people with both limited and diffuse systemic sclerosis report exercising.Most exercisers walk, but patients engage in a wide variety of exercise-related activities.Individually designed exercise programs are most likely to support and encourage exercise in patients with diverse disease manifestations. Systemic sclerosis is a rare autoimmune rheumatic disease associated with great morbidity and highly diverse presentation. Approximately half of people with both limited and diffuse systemic sclerosis report exercising. Most exercisers walk, but patients engage in a wide variety of exercise-related activities. Individually designed exercise programs are most likely to support and encourage exercise in patients with diverse disease manifestations.
DOI: 10.6084/m9.figshare.985515.v1
title: Y-maze data for flow experiment

description: These are data on choice made by sticklebacks when presented with olfactory cues in a flow through Y-maze. Cue was provided at three concentration levels and trials were conducted in laminar and turbulent flow.
DOI: 10.17632/y4md8znppn
title: Dataset of Raman and Surface-enhanced Raman Spectroscopy spectra of illicit adulterants added to dietary supplements

description: The dataset contains a collection of Raman and Surface-enhanced Raman Spectroscopy (SERS) spectral data of illicit adulterants added to dietary supplements.
DOI: 10.6084/m9.figshare.16567023.v2
title: ecoregion-shapefiles

description: These data are the individual shapefiles for each of the five grassland ecoregions determined by the North Central Climate Adaptation Science Center (NC CASC) management working group. A method and further description of these data will be updated in the near future.<br>This is a part of the greater NC CASC 2021 Grassland Synthesis collection. This collection contains the geospatial data analyzed and visualizations produced for the North Central Climate Adaptation Science Center Grasslands Synthesis Report 2021. Citation details and link to this publication coming soon.<br>Symbology (fill and outline colors)<br>Central Mixed Grass <br>HEX: #FF934F, RGB: 255, 147, 79<br><br>Northern Mixed GrassHEX: #E1DAAE, RGB: 225, 218, 174<br>ShortgrassHEX: #058ED9, RGB: 5, 142, 217<br>TallgrassHEX: #2D3142, RGB: 45, 49, 66<br>
DOI: 10.6084/m9.figshare.22046726.v1
title: Data and Code1

description: Processing and analysis of bus data in Huangdao District, Qingdao in 2018 to optimise the departure schedule. The aim is to reduce the cost of travel for passengers and increase the revenue of the bus company.
DOI: 10.6084/m9.figshare.25505131.v1
title: <b>Linking transformational leadership to green human resource management (GHRM) and employee engagement in green initiatives</b>

description: Around the world, higher education organizations are now trying to include environmental management and green practices as a part of their services. This study is an attempt to understand if green human resource management (GHRM) and employees’ intrinsic motivation are all crucial for employee engagement.
DOI: 10.6084/m9.figshare.28797809.v4
title: Maternal JAK-Inhibitor Usage Associated with Increased Risk of Aborted Pregnancy: A Systematic Review and Meta-Analysis

description: Supplementary data for BJD systematic review regarding the risks of maternal JAK-inhibitor usage. Published 15-APR-2025
DOI: 10.6084/m9.figshare.5126620.v1
title: Supplementary Material for: Nephrectomy in Autosomal Dominant Polycystic Kidney Disease: A Patient with Exceptionally Large, Still Functioning Kidneys

description: Autosomal dominant polycystic kidney disease (ADPKD) is the most common hereditary kidney disease. It is characterized by progressive cyst formation in both kidneys, often leading to end-stage kidney disease. Indications for surgical removal of an ADPKD kidney include intractable pain, hematuria, infection, or exceptional enlargement and small abdominal cavity hampering implantation of a donor kidney. We report the case of an extraordinarily large ADPKD kidney weighing 8.7 kg (19.3 lb) with a maximal length of 48 cm (19 inch), and with cysts filled with both clear and bloody fluid.
DOI: 10.17632/7nx4prgjzz
title: Direct simulation of hot jet in cold channel crossflow with temperature mixing

description: This is the data of a direct simulation of a hot jet in cold channel crossflow. Three thermal boundary conditions are considered: T=0 at the wall [1], Q=0 at the wall [1, 2] and conjugate heat transfer [3] For details about the computational configurations, methods and results, please refer to [1-3] (see links below) A paper on validating selected RANS models using the current database has been submitted to International Journal of Heat and Fluid Flow. A paper discussing the coherent structures of current flow using proper orthogonal decomposition (POD) and dynamic mode decomposition (DMD) has been submitted to Journal of Fluid Mechanics. We have the 3D time-averaged statistics of mean velocity, Reynolds stress, heat fluxes, temperature fluctuations and their budgets. We also have more than 4000 full resolution instantaneous snapshots for each case (only 200 for the adiabatic case). The complete dataset is about 20TB!!! More data will be released in the future. Please feel free to contact me if you need more information or more data. The authors acknowledge the use of ARCHER HPC allocated via UK Turbulence Consortium (EPSRC grant EP/L000261/1) and the use of BlueGene/Q supercomputer sponsored by EDF R&D centre Chatou, France. The authors are grateful to Cedric Flageul for help in implementing heat transfer in the DNS code and Sofiane Benhamadouche for valuable discussions and advice. E-mail: zhao.wu@manchester.ac.uk [1] Zhao Wu, Dominique Laurence, & Imran Afgan. 2015. DNS of a jet in cross flow with passive scalar mixing. Pages 479–482 of: 8th International Symposium on Turbulence, Heat and Mass Transfer. Sarajevo, Bosnia and Herzegovina: Begellhouse. [2] Zhao Wu, Dominique Laurence, & Imran Afgan. 2017a. Direct numerical simulation of a low momentum round jet in channel crossflow. Nuclear Engineering and Design, 313(mar), 273–284. DOI: 10.1016/j.nucengdes.2016.12.018 [3] Zhao Wu, Dominique Laurence, Hector Iacovides & Imran Afgan. 2017b. Direct Simulation of Conjugate Heat Transfer of Jet in Channel Crossflow. International Journal of Heat and Mass Transfer. DOI: 10.1016/j.ijheatmasstransfer.2017.03.027
DOI: 10.17632/bbjh8bdcgj
title: A Toolkit for solving the Optical Bloch Rate Equations in alkali metal atoms based on the QuantumOptics.jl package in Julia

description: The Optical Bloch Equations (OBEs) are useful for calculating the evolution of the density matrix of an atomic ensemble under the action of some Hamiltonian. A common situation concerns atoms with hyperfine structure that interact with an external magnetic field and laser radiation. When the spectral linewidth of the laser radiation is much larger than the natural linewidth of the transition, the mode spacing is much smaller than the natural linewidth, and the spectral linewidth is much larger than the characteristic evolution time of the density matrix, the OBEs can be reduced to rate equations for Zeeman coherences. We present a toolkit for solving these rate equations based on the QuantumOptics.jl package in the Julia language. Using these tools makes the code much more readable than previous implementations in C/C++, but almost as fast and easier to parallelize. The toolkit includes functions for calculating the steady-state solution of density matrix of alkali metal atoms in the presence of an external magnetic field and exposed to a pump laser beam of arbitrary polarization and propagation direction. Based on this density matrix, the toolkit offers functions to determine the fluorescence intensity of arbitrary polarization and direction as well as the absorption of a weak probe beam, also of arbitrary polarization and propagation direction. It can also produce a plot of the electronic angular momentum distribution of the atom based on the calculated density matrix. The toolkit is available on Github and has been validated by comparing its results to legacy code written in C/C++ and experimental measurements. As a test case, we show how the toolkit can be used to optimize a simple atomic magnetometer.
DOI: 10.17632/tk9b9xccvm
title: Dataset_FertiQol_Gender_Couples

description: Epidemiological data show that human reproductive disorders are a common problem worldwide, affecting almost one in six people of reproductive age. As a result, infertility has been identified by the World Health Organization as a public health disease. Reproductive problems can take a heavy toll on the psychosocial well-being of couples suffering from infertility. This is especially true for women, who tend to be the ones who undergo the most treatment. The main objective of the present study is to find out whether a sex-based infertility diagnosis influences the quality of life of couples with infertility. Also, we aim to find out whether the degree of adherence to gender norms influences their quality of life. A cross-sectional study was conducted using the Fertility Quality of Life Questionnaire (FertiQoL) and the Conformity to Feminine and Masculine Norms Inventories in a sample of 219 infertile Spanish couples (438 participants). The results show that, in all cases, regardless of the degree of conformity to gender norms and whether the infertility diagnosis was of female or male origin, women have lower scores on the self-perceived quality of life. This suggests that being female is already a psychosocial risk factor when assessing the psychosocial conse-quences of infertility.
DOI: 10.21942/uva.14261609.v2
title: Data and analysis script for analysing temporal patterns in bird abundance on the North Sea

description: Data and analysis script used for manuscript: Temporal patterns in offshore bird abundance during the breeding season at the Dutch North Sea coast by Jens A. van Erp, E. Emiel van Loon, Kees (C.) J. Camphuysen, Judy Shamoun-Baranes. Metadata.docx describes each individual data file. Script requires RStudio and listed libraries to run.