cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.e3byhk
title: Occurrence Download

description: A dataset containing 74268 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1941-2020",
 "Geometry POLYGON((-74.578 -0.645,-71.209 -0.645,-71.209 2.304,-74.578 2.304,-74.578 -0.645))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 74268 records from 142 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005837-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tcvg7d
title: Occurrence Download

description: A dataset containing 8347 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Finland",
 "TaxonKey is Araschnia levana (Linnaeus, 1758)"
 ]
}

 The dataset includes 8347 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0274046-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kq3fpj
title: Occurrence Download

description: A dataset listing the 3500 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Unknown evidence",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen"
 ]
 },
 "Geometry POLYGON ((-89.77358639818495 18.445979191990702, -89.0152821200068 18.445979191990702, -89.0152821200068 19.16386337577976, -89.77358639818495 19.16386337577976, -89.77358639818495 18.445979191990702))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is CC-BY 4.0",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 3500 records were derived from 158 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105631-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3amaq
title: Occurrence Download

description: A dataset containing 15469 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "Year 1836-2020",
 {
 "or" : [
 "TaxonKey is Mammalia",
 "TaxonKey is Macaca radiata (É.Geoffroy Saint-Hilaire, 1812)"
 ]
 }
 ]
}

 The dataset includes 15469 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010125-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/dans-xyd-stmv
title: Middenweg 16 te Haren RAAPrap_7283_HARMI2_20241021

description: &lt;p&gt;Het onderzoek heeft sporen en vondsten uit verscheidene archeologische perioden opgeleverd. Zo zijn er 8 greppels aangetroffen, waarvan een aantal tot de late middeleeuwen tot laat nieuwe tijd dateren.&lt;br&gt;Een deel van deze greppels is geïnterpreteerd als perceelgreppels. Aan de andere greppels kan geen specifiekere interpretatie worden gegeven. Op basis van historisch kaartmateriaal is gebleken dat de perceelgreppels naar alle waarschijnlijk in de jaren 1960 en in het eind van de jaren 1970 zijn gedicht.&lt;br&gt;Het merendeel van de aangetroffen paalkuilen en kuilen (n = 7) dateert vermoedelijk in de bronstijd tot ijzertijd. Deze paalkuilen vormen samen echter geen structuur. Het kan echter niet worden uitgesloten dat eventuele structuren buiten de opgravingsput liggen en zodoende niet te herkennen zijn binnen het onderzochte gebied.&lt;br&gt;Het vondstmateriaal dateert vrijwel allemaal in de late middeleeuwen en de nieuwe tijd, en voor een kleiner deel tot de late prehistorie. Het meest specifiek te dateren vondstmateriaal betreft het pijpaardewerk. Dit bevat stempels waardoor het goed te dateren is. De twee pijpenkoppen waren aangetroffen in greppel S19 en dateren tussen 1789 en 1820, en 1724 en 1806.&lt;/p&gt;
DOI: 10.5281/zenodo.15652972
title: Data products and code corresponding to "River Network Routing and Discharge Partitioning on a Multichannel River Network"

description: Corresponding manuscript

This dataset corresponds to all input and output files that were used in the study reported in:



Collins, E.L., Altenau, E., Pavelsky, T., David, C.H., Getirana, A., and Johnson, E.. (Submitted), River Network Routing and Discharge Partitioning on a Multichannel River Network.


When making use of any of the files in this dataset, please cite both the aforementioned article and the dataset herein.

 

Files included in this version

All 3-hourly discharge simulations (netCDF) for the SWORD Mirror (traditional, single channel) and SWORD (multichannel) river networks for the Amazon (b62) and Mackenzie (b82) river basins. Note that there are three files each for the SWORD river network for each basin. These correspond to each of the discharge partitioning approaches tested in the study: (1) width only ('wid'), (2) width and length ('wid_len'), and (3) width and sinuosity ('wid_sin').





Qout_SWORDMirror_b62_20150101_20240531_GLDASv21.nc.zip

 




Qout_SWORDMirror_b82_20150101_20240531_GLDASv21.nc.zip

 




Qout_SWORD_b62_20150101_20240531_GLDASv21_wid.nc.zip

 




Qout_SWORD_b62_20150101_20240531_GLDASv21_wid_len.nc.zip

 




Qout_SWORD_b62_20150101_20240531_GLDASv21_wid_sin.nc.zip

 




Qout_SWORD_b82_20150101_20240531_GLDASv21_wid.nc.zip

 




Qout_SWORD_b82_20150101_20240531_GLDASv21_wid_len.nc.zip

 




Qout_SWORD_b82_20150101_20240531_GLDASv21_wid_sin.nc.zip



 

The SWORD Mirror and SWORD river network shapefiles for each basin with a column containing reach IDs so that discharge simulations from the netCDFs can be attached and visualized.





SWORDMirror_b62.zip


SWORDMirror_b82.zip



SWORD_b62.zip


SWORD_b82.zip


 

We also include the Python script used for multichannel routing:



RiverRoutingMultichannels.py
DOI: 10.5281/zenodo.17107473
title: Data products and code corresponding to "River Network Routing and Discharge Partitioning on a Multichannel River Network"

description: Corresponding manuscript

This dataset corresponds to all input and output files that were used in the study reported in:



Collins, E.L., Altenau, E., Pavelsky, T., David, C.H., Getirana, A., and Johnson, E.. (Submitted), River Network Routing and Discharge Partitioning on a Multichannel River Network.


When making use of any of the files in this dataset, please cite both the aforementioned article and the dataset herein.

 

Files included in this version

All 3-hourly discharge simulations (netCDF) for the SWORD Mirror (traditional, single channel) and SWORD (multichannel) river networks for the Amazon (b62) and Mackenzie (b82) river basins. Note that there are three files each for the SWORD river network for each basin. These correspond to each of the discharge partitioning approaches tested in the study: (1) width only ('wid'), (2) width and length ('wid_len'), and (3) width and sinuosity ('wid_sin').





Qout_SWORDMirror_b62_20150101_20240531_GLDASv21.nc.zip

 




Qout_SWORDMirror_b82_20150101_20240531_GLDASv21.nc.zip

 




Qout_SWORD_b62_20150101_20240531_GLDASv21_wid.nc.zip

 




Qout_SWORD_b62_20150101_20240531_GLDASv21_wid_len.nc.zip

 




Qout_SWORD_b62_20150101_20240531_GLDASv21_wid_sin.nc.zip

 




Qout_SWORD_b82_20150101_20240531_GLDASv21_wid.nc.zip

 




Qout_SWORD_b82_20150101_20240531_GLDASv21_wid_len.nc.zip

 




Qout_SWORD_b82_20150101_20240531_GLDASv21_wid_sin.nc.zip



 

The SWORD Mirror and SWORD river network shapefiles for each basin with a column containing reach IDs so that discharge simulations from the netCDFs can be attached and visualized.





SWORDMirror_b62.zip


SWORDMirror_b82.zip



SWORD_b62.zip


SWORD_b82.zip


 

We also include the Python script used for multichannel routing:



RiverRoutingMultichannels.py
DOI: 10.5281/zenodo.17107425
title: Electrical Measurement Dataset from a University Laboratory for Smart Energy Applications

description: In this dataset we show with measurements of three-phase voltages and currents, active and  reactive power (per phase and total), power factor, and system frequency. The data was  collected from April to December 2024 and can be useful for smart grid studies, demand forecasting, energy efficiency, and anomaly detection
DOI: 10.5281/zenodo.17107426
title: Electrical Measurement Dataset from a University Laboratory for Smart Energy Applications

description: In this dataset we show with measurements of three-phase voltages and currents, active and  reactive power (per phase and total), power factor, and system frequency. The data was  collected from April to December 2024 and can be useful for smart grid studies, demand forecasting, energy efficiency, and anomaly detection
DOI: 10.15468/dl.ffxbrx
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Leptodoras copei)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 30 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056102-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d82wrc
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvinia cucullata",
 "Country is Viet Nam",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056105-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mpka6a
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Romania",
 "OccurrenceStatus is Present",
 "TaxonKey is Branta canadensis"
 ]
}

 The dataset includes 55 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056104-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2m023v
title: CCDC 2413136: Experimental Crystal Structure Determination

description: Related Article: Blessing D. Peter, Qiuhao Yi, Zhixun Luo|2025|Nanoscale|17|19821|doi:10.1039/D5NR01269D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.17092408
title: A catalog of genes and species of the brown rat (Rattus norvegicus) gut microbiota

description: Dataset overviewWe built a catalog of 5.9M genes found in the brown rat gut microbiota. Co-abundant genes were binned in 1627 Metagenomic Species for which we provide taxonomic labels.This dataset can be used to analyze shotgun sequencing data of the brown rat gut microbiota.
Data sources Rat fecal (and milk) samples characterized by shotgun metagenomic sequencing during the Mamiprooffi project. Sequencing data will be submitted soon on the European Nucleotide Archive (Bioproject PRJEB57230)The gene catalog of the Sprague-Dawley rat gut metagenome published by Pan et al.
Metagenomic assemblyMetagenomic assembly was performed on the Mamiprooffi samples (Data Source 1) with SPAdes (parameters: --iontorrent --careful). Contigs of less than 1500 bp or successfully aligned on the rat genome (Rnor_6.0) were removed.Non-redundant gene catalogGenes were predicted on all contigs with Prodigal (parameters : -m -p meta ). Genes with missing start codon or shorter than 99 bp were discarded.Then, partial and complete genes were separately clustered with cd-hit-est (parameters -c 0.95 -aS 0.90 -G 0 -d 0 -M 0 -T 0 ). Finally, these two non-redundant gene sets were merged with the previously published catalog (Data Source 2) using cd-hit-est-2d by considering at first complete genes (contact us for futher details).Functionnal annotationKEGG Orthologs (KOs) were assigned to genes of the final catalog with KofamScan (version 1.3.0, KEGG 107 database)
Metagenomic SpeciesUsing the Meteor software suite, reads from samples in Bioprojects PRJEB57230 and PRJEB22973 were mapped against the final non redundant catalog to build a raw gene abundance table (5.9 million genes quantified in 370 samples). This table was submitted to MSPminer and Canopy. A total of 1627 clusters of co-abundant genes or MetaGenomic Species (MGS) were discovered.Quality control of each MGS was manually performed by visualizing heatmaps representative of the normalized gene abundance profiles.
Taxonomic annotation of Metagenomic SpeciesMGS taxonomic annotation was performed by aligning all core and accessory genes against the GTDB r214 representative genomes using blastn [4] (version 2.10.1, task = megablast, word_size = 16). The 20 best hits for each gene were kept. A species-level assignment was given if > 50% of the genes matched a GTDB representative genome with a mean identity ≥ 95% and mean gene length coverage ≥ 90%. The remaining MGS were assigned to a higher taxonomic levels (genus to superkingdom) if more than 50% of their genes had the same annotation.
Mapping rate distribution across public cohortsWe generated mapping rate distribution plots using Meteor2 (default parameters), comparing performance between: PRJEB22973 and PRJEB57230 (cohort used in catalogue assembly) and PRNJNA609596 (independent cohort not used in assembly).
DOI: 10.15468/dl.6u3757
title: Occurrence Download

description: A dataset containing 24295 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Veronica triphyllos"
 ]
}

 The dataset includes 24295 records from 430 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056103-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ta9md6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Aerodramus maximus)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056107-250827131500795/datasets/export for details.
DOI: 10.15468/dl.uzyepm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Aerodramus maximus)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056108-250827131500795/datasets/export for details.
DOI: 10.5281/zenodo.17106851
title: Data for 'Microstructure Engineering During Wire-Arc Additive Manufacturing of High-Strength Martensitic Steels'

description: Data used for "Microstructure Engineering During Wire-Arc Additive Manufacturing of High-Strength Martensitic Steels" to be published in Metallurgical and Materials Transactions A.

This includes EBSD maps, before and after reconstruction, raw data for dilatometry, SEM, optical and polarised light images. EBSD data was processed (collection, austenite grain reconstructions and filling in mis-indexed pixels for reconstruciton) using Oxford Instruments software, although CTF files have also been uploaded.

For any issues or questions contact mark.taylor-5@manchester.ac.uk
DOI: 10.5281/zenodo.17106852
title: Data for 'Microstructure Engineering During Wire-Arc Additive Manufacturing of High-Strength Martensitic Steels'

description: Data used for "Microstructure Engineering During Wire-Arc Additive Manufacturing of High-Strength Martensitic Steels" to be published in Metallurgical and Materials Transactions A.

This includes EBSD maps, before and after reconstruction, raw data for dilatometry, SEM, optical and polarised light images. EBSD data was processed (collection, austenite grain reconstructions and filling in mis-indexed pixels for reconstruciton) using Oxford Instruments software, although CTF files have also been uploaded.

For any issues or questions contact mark.taylor-5@manchester.ac.uk
DOI: 10.15468/dl.kh5jc2
title: Occurrence Download

description: A dataset containing 3116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Aerodramus maximus)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 3116 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056109-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30111951
title: annotations

description: Dataset annotations
DOI: 10.6084/m9.figshare.30111951.v1
title: annotations

description: Dataset annotations
DOI: 10.5066/f76h4fk5
title: Surveys and Monitoring of Coastal Cactus Wren in Southern San Diego County (ver. 5.0, December 2024)

description: Data presented are results of surveys and monitoring for San Diego Cactus Wren (Campylorhynchus brunneicapillus) in southern San Diego County. These data were collected to assess Cactus Wren population status following 3 years of drought and determine the relationships between specific elements of habitat quality, food availability, and Cactus Wren productivity and survival. Surveys were conducted periodically at 35 plots that were last surveyed in 2012. A subset of Cactus Wren territories were monitored in the Otay and Sweetwater/San Diego genetic clusters to ascertain Cactus Wren breeding productivity, survival, and associated vegetation composition and structure. Nesting data were compiled to present seasonal productivity for each Cactus Wren pair. All nestlings and adults (when possible) were color banded with unique color combinations to identify individuals on subsequent visits to provide data on survival within and between years. Habitat data were collected at survey plots during the first year of the survey and at monitoring sites during all years.
DOI: 10.5281/zenodo.17092391
title: MicroReset: characterization of the rabbit (Oryctolagus cuniculus) fecal metagenome and resistome by deep shotgun sequencing

description: Data sourceThe dataset was generated from 30 rabbit fecal samples subjected to deep shotgun metagenomic sequencing. The sequencing data is available under the BioProject PRJEB50625.Metagenomic AssemblyRaw sequencing reads were first pre-processed using fastp for adapter removal and quality trimming. Host-derived reads were filtered out by mapping to the rabbit reference genome (GCF_000001635.27) using Bowtie2 and removing mapped reads with Samtools. Each sample was individually assembled using metaSPAdes. Contigs shorter than 1,500 bp were excluded from downstream analysis.
MAG RecoveryReads from each sample were mapped to all 30 assemblies (30×30 mappings) using Bowtie2. The resulting alignments were sorted and indexed with Samtools. Contig coverage across all samples was computed using `jgi_summarize_bam_contig_depths`. Binning was performed with MetaBAT 2 and SemiBin v1.3. MAG quality was assessed with CheckM. Only high-quality MAGs (≥70% completeness, ≤5% contamination, N50 ≥ 8 kb) were retained.Non-Redundant Gene CatalogGene prediction was carried out using Prodigal on all contigs from the current study (with `-m -p meta`). Genes shorter than 90 bp or lacking start/stop codons were discarded. The remaining genes from both sources were pooled and clustered using CD-HIT-EST (parameters: `-c 0.95 -aS 0.90 -G 0 -d 0 -M 0 -T 0`). The longest contigs were used to select representative genes.
MSP RecoveryShotgun reads from the 30 samples were aligned to the non-redundant gene catalog using the Meteor suite, generating a gene abundance matrix (5.7 million genes × 30 samples). Co-abundant genes were grouped into 1,053 Metagenomic Species Pan-genomes (MSPs) using MSPminer.
Taxonomic Annotation of MSPsMAGs representing each species were taxonomically annotated using GTDB-Tk with GTDB release r214. The resulting taxonomy was propagated to the corresponding MSPs.
Phylogenetic Tree ConstructionA set of 39 universal phylogenetic marker genes was extracted from the 1,053 MSPs (or their corresponding MAGs, when available) using fetchMGs. Each marker was independently aligned using MUSCLE, and the alignments were concatenated and trimmed using trimAl (parameter: `-automated1`). A maximum-likelihood phylogenetic tree was constructed with FastTreeMP (parameters: `-gamma -pseudo -spr -mlacc 3 -slownni`).
Mapping rate distribution across public cohortsWe generated mapping rate distribution plots using Meteor2 (default parameters) for PRJEB50625 (cohort used in catalogue assembly).
DOI: 10.6084/m9.figshare.28448219
title: A dataset of Hydrodynamics and Ripple Geometry During Typhoon Doksuri at Yuandangao Beach, China

description: Including intertidal hydrodynamics, morphology, and offshore waves.
DOI: 10.6084/m9.figshare.28448219.v1
title: A dataset of Hydrodynamics and Ripple Geometry During Typhoon Doksuri at Yuandangao Beach, China

description: These Datasets are used in a manuscript submitted to JGR-Earth Surface (# 2025JF008378).
DOI: 10.6084/m9.figshare.28448219.v2
title: A dataset of Hydrodynamics and Ripple Geometry During Typhoon Doksuri at Yuandangao Beach, China

description: Including intertidal hydrodynamics, morphology, and offshore waves.