cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3554256.v1
title: Supplement 1. A summary of data and a list of references.

description: File List MA_Data.txt (md5: 0e737a7606064d123a53ae961663aa9b) Description MA_data.txt is a text file (tab delimited, with headers) containing a summary of data included in the meta-analysis. nr: sample size used to calculate variance of effect size, for correlations nb: sample size used to calculate variance of effect size, for slopes r: correlation coefficient b: regression slope V(b): variance of b NA: Not Available data. Difference in n: indicates whether the sample size used in the meta-analysis was different or equal to the number of replicates reported by authors. n values were sometimes "Different" when r and b had to be re-calculated from tables or digitized from figures. Type of r: r values directly extracted from original publications or re-calculated from tables or figures Source of r, b, extent: Text, figures, tables or appendices used to extract r, b or spatial extent values In the last five columns, the marks indicate the case studies used for a specific meta-analysis. E.g. Case 1 was used in the test of the spatial extent, the habitat, the taxon and the diversity metric effects but not in the test of the trophic level effect on plant-animals correlations. <br>
DOI: 10.6084/m9.figshare.3554253
title: Appendix A. Description of precipitation by year.

description: Description of precipitation by year.
DOI: 10.6084/m9.figshare.3554253.v1
title: Appendix A. Description of precipitation by year.

description: Description of precipitation by year.
DOI: 10.6084/m9.figshare.3554250
title: Appendix B. Means and standard deviations of non-serpentine and serpentine soil properties.

description: Means and standard deviations of non-serpentine and serpentine soil properties.
DOI: 10.6084/m9.figshare.3554244
title: Appendix C. Means and standard deviations of community properties by functional group.

description: Means and standard deviations of community properties by functional group.
DOI: 10.6084/m9.figshare.3554244.v1
title: Appendix C. Means and standard deviations of community properties by functional group.

description: Means and standard deviations of community properties by functional group.
DOI: 10.6084/m9.figshare.3554241
title: Appendix D. Means, standard deviations, and correlation coefficients of community weighted mean (CWM) trait values in relation to Bray-Curtis dissimilarity.

description: Means, standard deviations, and correlation coefficients of community weighted mean (CWM) trait values in relation to Bray-Curtis dissimilarity.
DOI: 10.6084/m9.figshare.3554241.v1
title: Appendix D. Means, standard deviations, and correlation coefficients of community weighted mean (CWM) trait values in relation to Bray-Curtis dissimilarity.

description: Means, standard deviations, and correlation coefficients of community weighted mean (CWM) trait values in relation to Bray-Curtis dissimilarity.
DOI: 10.6084/m9.figshare.3554238
title: Appendix E. Principal-component eigenvectors for community traits with and without annual grasses.

description: Principal-component eigenvectors for community traits with and without annual grasses.
DOI: 10.6084/m9.figshare.3554238.v1
title: Appendix E. Principal-component eigenvectors for community traits with and without annual grasses.

description: Principal-component eigenvectors for community traits with and without annual grasses.
DOI: 10.6084/m9.figshare.3554235
title: Appendix A. Comparison of coexistence in the forest dynamics model under different parameter values.

description: Comparison of coexistence in the forest dynamics model under different parameter values.
DOI: 10.6084/m9.figshare.3554229
title: Appendix B. Pairwise correlations in annual seedling recruitment for 28 species at Barro Colorado Island, Panama.

description: Pairwise correlations in annual seedling recruitment for 28 species at Barro Colorado Island, Panama.
DOI: 10.6084/m9.figshare.3554226
title: Appendix C. Number of species persisting in simulations of a the forest dynamics model for a 28-species subcommunity.

description: Number of species persisting in simulations of a the forest dynamics model for a 28-species subcommunity.
DOI: 10.6084/m9.figshare.3554223
title: Appendix D. Derivation of the invasion rates, Dij, given in Eq. 3.

description: Derivation of the invasion rates, Dij, given in Eq. 3.
DOI: 10.6084/m9.figshare.3554220
title: Appendix A. Study plot locations and characteristics.

description: Study plot locations and characteristics.
DOI: 10.6084/m9.figshare.3554220.v1
title: Appendix A. Study plot locations and characteristics.

description: Study plot locations and characteristics.
DOI: 10.15482/usda.adc/1519328
title: Patterns of precipitation and productivity on various topographic positions on the Central Plains Experimental Range, Nunn, Colorado
DOI: 10.6084/m9.figshare.3554217
title: Appendix B. Issues in comparing growth rates derived from census and dendrometer data.

description: Issues in comparing growth rates derived from census and dendrometer data.
DOI: 10.6084/m9.figshare.3554217.v1
title: Appendix B. Issues in comparing growth rates derived from census and dendrometer data.

description: Issues in comparing growth rates derived from census and dendrometer data.
DOI: 10.6084/m9.figshare.3554214
title: Appendix C. Generalized linear model analysis of tree growth rate using dendrometer data only.

description: Generalized linear model analysis of tree growth rate using dendrometer data only.
DOI: 10.6084/m9.figshare.3554208
title: Appendix D. Parameter estimates from the Bayesian analysis of tree growth.

description: Parameter estimates from the Bayesian analysis of tree growth.
DOI: 10.6084/m9.figshare.3554208.v1
title: Appendix D. Parameter estimates from the Bayesian analysis of tree growth.

description: Parameter estimates from the Bayesian analysis of tree growth.
DOI: 10.6084/m9.figshare.3554202
title: Appendix A. A table summarizing the soil properties of wet and dry sites.

description: A table summarizing the soil properties of wet and dry sites.
DOI: 10.6084/m9.figshare.3554202.v1
title: Appendix A. A table summarizing the soil properties of wet and dry sites.

description: A table summarizing the soil properties of wet and dry sites.
DOI: 10.6084/m9.figshare.3554199
title: Appendix B. Tables of matrices used to model stable size distribution of resprouts, by species and site type.

description: Tables of matrices used to model stable size distribution of resprouts, by species and site type.
DOI: 10.6084/m9.figshare.3554199.v1
title: Appendix B. Tables of matrices used to model stable size distribution of resprouts, by species and site type.

description: Tables of matrices used to model stable size distribution of resprouts, by species and site type.
DOI: 10.6084/m9.figshare.3554193
title: Appendix A. Derivational details for Eqs. 16a, 16b, and 17.

description: Derivational details for Eqs. 16a, 16b, and 17.
DOI: 10.6084/m9.figshare.3554190
title: Appendix B. More comparisons of the two formulas for alpha diversity.

description: More comparisons of the two formulas for alpha diversity.
DOI: 10.6084/m9.figshare.3554187
title: Appendix C. Statistical estimation issues.

description: Statistical estimation issues.
DOI: 10.6084/m9.figshare.3554184
title: Appendix A. Tables and graphs related to the analysis of potential N fertilization and fire effects on different environmental variables.

description: Tables and graphs related to the analysis of potential N fertilization and fire effects on different environmental variables.
DOI: 10.6084/m9.figshare.3554181
title: Appendix A. Schematic diagram of coastal zones, salinity gradients, and species distributions at the study site.

description: Schematic diagram of coastal zones, salinity gradients, and species distributions at the study site.
DOI: 10.6084/m9.figshare.3554181.v1
title: Appendix A. Schematic diagram of coastal zones, salinity gradients, and species distributions at the study site.

description: Schematic diagram of coastal zones, salinity gradients, and species distributions at the study site.
DOI: 10.6084/m9.figshare.3554178
title: Appendix B. Edaphic and microclimate factors in Tamarix chinensis canopy, removal, and open plots.

description: Edaphic and microclimate factors in Tamarix chinensis canopy, removal, and open plots.
DOI: 10.6084/m9.figshare.3554178.v1
title: Appendix B. Edaphic and microclimate factors in Tamarix chinensis canopy, removal, and open plots.

description: Edaphic and microclimate factors in Tamarix chinensis canopy, removal, and open plots.
DOI: 10.6084/m9.figshare.3554175
title: Appendix A. Response surface design, study system and species, scope of the study, and details of analytical methods.

description: Response surface design, study system and species, scope of the study, and details of analytical methods.
DOI: 10.6084/m9.figshare.3554175.v1
title: Appendix A. Response surface design, study system and species, scope of the study, and details of analytical methods.

description: Response surface design, study system and species, scope of the study, and details of analytical methods.
DOI: 10.6084/m9.figshare.3554172
title: Appendix B. Parameter estimates.

description: Parameter estimates.
DOI: 10.6084/m9.figshare.3554172.v1
title: Appendix B. Parameter estimates.

description: Parameter estimates.
DOI: 10.6084/m9.figshare.3554169
title: Appendix C. Results of ANCOVA testing for effects of competition on colony size.

description: Results of ANCOVA testing for effects of competition on colony size.
DOI: 10.6084/m9.figshare.3554169.v1
title: Appendix C. Results of ANCOVA testing for effects of competition on colony size.

description: Results of ANCOVA testing for effects of competition on colony size.
DOI: 10.6084/m9.figshare.3554166
title: Appendix D. Relationship between colony size and reproduction in Watersipora subtorquata.

description: Relationship between colony size and reproduction in Watersipora subtorquata.
DOI: 10.6084/m9.figshare.3554166.v1
title: Appendix D. Relationship between colony size and reproduction in Watersipora subtorquata.

description: Relationship between colony size and reproduction in Watersipora subtorquata.
DOI: 10.6084/m9.figshare.3554163
title: Appendix A. Derivation of dλ.

description: Derivation of dλ.
DOI: 10.6084/m9.figshare.3554160
title: Supplement 1. R scripts for calculating eviction measures and applying them to example data.

description: File List Williamsetal_EvictMS_Rsupp_Functions_May2012.txt Williamsetal_EvictMS_Rsupp_Examples_May2012.txt Description The supplementary material consists of two R scripts. Williamsetal_EvictMS_Rsupp_Functions_May2012.txt contains the functions for calculating the eviction measures and <i>d</i>λ as described in the text and the alternative measures of <i>d</i>λ described in the Appendix. Williamsetal_EvictMS_Rsupp_Examples_May2012.txt contains example data for <i>Anemone patens</i>, applies the eviction measures to those data, demonstrates how to solve eviction by implementing and floor and ceiling, and recreates Fig. 2E. (The <i>Anemone patens</i> data were previously published in Williams and Crone 2006 (<i>Ecology</i>).) Additional R libraries that are required are noted within the scripts. R can be downloaded for free from a CRAN site near you (CRAN=Comprehensive R Archive Network).
DOI: 10.6084/m9.figshare.3554157
title: Appendix A. Reference list for studies in the metadata sets.

description: Reference list for studies in the metadata sets.
DOI: 10.6084/m9.figshare.3554157.v1
title: Appendix A. Reference list for studies in the metadata sets.

description: Reference list for studies in the metadata sets.
DOI: 10.6084/m9.figshare.3554154
title: Appendix B. Methods related to the choice of evenness indices and data analyses, two tables containing results of the mixed-effect models, and two figures showing results from the meta-analysis.

description: Methods related to the choice of evenness indices and data analyses, two tables containing results of the mixed-effect models, and two figures showing results from the meta-analysis.
DOI: 10.6084/m9.figshare.3554154.v1
title: Appendix B. Methods related to the choice of evenness indices and data analyses, two tables containing results of the mixed-effect models, and two figures showing results from the meta-analysis.

description: Methods related to the choice of evenness indices and data analyses, two tables containing results of the mixed-effect models, and two figures showing results from the meta-analysis.
DOI: 10.6084/m9.figshare.3554151
title: Supplement 1. Information on the studies in the metadata sets and the Visual Basic code associated with the rarefactions.

description: File List Data1.txt (md5: 75870e6a40e77feb7c08da2152ca9936)<br> Data2.txt (md5: f6b11f8a3b572478e9af14a1ab0d7de0)<br> Rarefaction.txt (md5: 6ffb56c200668347652aaaa440526b13) Description Data1.txt is a tab-delimited ASCII file. The file contains references, taxa, crops, countries, taxonomic groups, id levels, and abundance, richness, and evenness values for each study in the metadata set comparing organic and conventional farming. Column definitions follow: 1 = REFERENCE<br> 2 = TAXA<br> 3 = CROP(S)<br> 4 = COUNTRY<br> 5 = TAXONOMIC GROUP<br> 6 = ID LEVEL<br> 7 = ABUNDANCE IN CONVENTIONAL<br> 8 = ABUNDANCE IN ORGANIC<br> 9 = ABUNDANCE EFFECT SIZE<br> 10 = RICHNESS OBSERVED IN CONVENTIONAL<br> 11 = RICHNESS OBSERVED IN ORGANIC<br> 12 = OBSERVED RICHNESS EFFECT SIZE<br> 13 = EVENNESS OBSERVED IN CONVENTIONAL<br> 14 = EVENNESS OBSERVED IN ORGANIC<br> 15 = OBSERVED EVENNESS EFFECT SIZE<br> 16 = RICHNESS RAREFIED IN CONVENTIONAL<br> 17 = RICHNESS RAREFIED IN ORGANIC<br> 18 = RAREFIED RICHNESS EFFECT SIZE<br> 19 = EVENNESS RAREFIED IN CONVENTIONAL<br> 20 = EVENNESS RAREFIED IN ORGANIC<br> 21 = RAREFIED EVENNESS EFFECT SIZE <br> Data2.txt is a tab-delimited ASCII file. The file contains references, taxa, crops, countries, taxonomic groups, id levels, and abundance, richness, and evenness values for each study in the metadata set comparing burned and unburned ecosystems. Column definitions follow: 1 = REFERENCE<br> 2 = TAXA<br> 3 = COUNTRY<br> 4 = TAXONOMIC GROUP<br> 5 = ID LEVEL<br> 6 = ABUNDANCE IN CONVENTIONAL<br> 7 = ABUNDANCE IN ORGANIC<br> 8 = ABUNDANCE EFFECT SIZE<br> 9 = RICHNESS OBSERVED IN CONVENTIONAL<br> 10 = RICHNESS OBSERVED IN ORGANIC<br> 11 = OBSERVED RICHNESS EFFECT SIZE<br> 12 = EVENNESS OBSERVED IN CONVENTIONAL<br> 13 = EVENNESS OBSERVED IN ORGANIC<br> 14 = OBSERVED EVENNESS EFFECT SIZE<br> 15 = RICHNESS RAREFIED IN CONVENTIONAL<br> 16 = RICHNESS RAREFIED IN ORGANIC<br> 17 = RAREFIED RICHNESS EFFECT SIZE<br> 18 = EVENNESS RAREFIED IN CONVENTIONAL<br> 19 = EVENNESS RAREFIED IN ORGANIC<br> 20 = RAREFIED EVENNESS EFFECT SIZE <br> Rarefaction.txt is a tab-delimited ASCII file. The file contains Visual Basic code to perform the rarefactions.
DOI: 10.6084/m9.figshare.3554151.v1
title: Supplement 1. Information on the studies in the metadata sets and the Visual Basic code associated with the rarefactions.

description: File List Data1.txt (md5: 75870e6a40e77feb7c08da2152ca9936)<br> Data2.txt (md5: f6b11f8a3b572478e9af14a1ab0d7de0)<br> Rarefaction.txt (md5: 6ffb56c200668347652aaaa440526b13) Description Data1.txt is a tab-delimited ASCII file. The file contains references, taxa, crops, countries, taxonomic groups, id levels, and abundance, richness, and evenness values for each study in the metadata set comparing organic and conventional farming. Column definitions follow: 1 = REFERENCE<br> 2 = TAXA<br> 3 = CROP(S)<br> 4 = COUNTRY<br> 5 = TAXONOMIC GROUP<br> 6 = ID LEVEL<br> 7 = ABUNDANCE IN CONVENTIONAL<br> 8 = ABUNDANCE IN ORGANIC<br> 9 = ABUNDANCE EFFECT SIZE<br> 10 = RICHNESS OBSERVED IN CONVENTIONAL<br> 11 = RICHNESS OBSERVED IN ORGANIC<br> 12 = OBSERVED RICHNESS EFFECT SIZE<br> 13 = EVENNESS OBSERVED IN CONVENTIONAL<br> 14 = EVENNESS OBSERVED IN ORGANIC<br> 15 = OBSERVED EVENNESS EFFECT SIZE<br> 16 = RICHNESS RAREFIED IN CONVENTIONAL<br> 17 = RICHNESS RAREFIED IN ORGANIC<br> 18 = RAREFIED RICHNESS EFFECT SIZE<br> 19 = EVENNESS RAREFIED IN CONVENTIONAL<br> 20 = EVENNESS RAREFIED IN ORGANIC<br> 21 = RAREFIED EVENNESS EFFECT SIZE <br> Data2.txt is a tab-delimited ASCII file. The file contains references, taxa, crops, countries, taxonomic groups, id levels, and abundance, richness, and evenness values for each study in the metadata set comparing burned and unburned ecosystems. Column definitions follow: 1 = REFERENCE<br> 2 = TAXA<br> 3 = COUNTRY<br> 4 = TAXONOMIC GROUP<br> 5 = ID LEVEL<br> 6 = ABUNDANCE IN CONVENTIONAL<br> 7 = ABUNDANCE IN ORGANIC<br> 8 = ABUNDANCE EFFECT SIZE<br> 9 = RICHNESS OBSERVED IN CONVENTIONAL<br> 10 = RICHNESS OBSERVED IN ORGANIC<br> 11 = OBSERVED RICHNESS EFFECT SIZE<br> 12 = EVENNESS OBSERVED IN CONVENTIONAL<br> 13 = EVENNESS OBSERVED IN ORGANIC<br> 14 = OBSERVED EVENNESS EFFECT SIZE<br> 15 = RICHNESS RAREFIED IN CONVENTIONAL<br> 16 = RICHNESS RAREFIED IN ORGANIC<br> 17 = RAREFIED RICHNESS EFFECT SIZE<br> 18 = EVENNESS RAREFIED IN CONVENTIONAL<br> 19 = EVENNESS RAREFIED IN ORGANIC<br> 20 = RAREFIED EVENNESS EFFECT SIZE <br> Rarefaction.txt is a tab-delimited ASCII file. The file contains Visual Basic code to perform the rarefactions.
DOI: 10.6084/m9.figshare.3554148
title: Appendix A. Methods related to the field and greenhouse experiments, eight figures showing data from the field and greenhouse experiments, and six tables showing results of the statistical analyses.

description: Methods related to the field and greenhouse experiments, eight figures showing data from the field and greenhouse experiments, and six tables showing results of the statistical analyses.
DOI: 10.6084/m9.figshare.3554148.v1
title: Appendix A. Methods related to the field and greenhouse experiments, eight figures showing data from the field and greenhouse experiments, and six tables showing results of the statistical analyses.

description: Methods related to the field and greenhouse experiments, eight figures showing data from the field and greenhouse experiments, and six tables showing results of the statistical analyses.
DOI: 10.6084/m9.figshare.3554145
title: Appendix A. Long-term phenology data from three study sites used for analyses.

description: Long-term phenology data from three study sites used for analyses.
DOI: 10.6084/m9.figshare.3554145.v1
title: Appendix A. Long-term phenology data from three study sites used for analyses.

description: Long-term phenology data from three study sites used for analyses.
DOI: 10.6084/m9.figshare.3554142
title: Appendix B. Flowering onset of Castilleja tenuiflora (with outliers included), an early-season nectar source for breeding Broad-tailed Hummingbirds (Selasphorus platycercus) at Finger Rock Canyon, Arizona, USA.

description: Flowering onset of Castilleja tenuiflora (with outliers included), an early-season nectar source for breeding Broad-tailed Hummingbirds (Selasphorus platycercus) at Finger Rock Canyon, Arizona, USA.
DOI: 10.6084/m9.figshare.3554142.v1
title: Appendix B. Flowering onset of Castilleja tenuiflora (with outliers included), an early-season nectar source for breeding Broad-tailed Hummingbirds (Selasphorus platycercus) at Finger Rock Canyon, Arizona, USA.

description: Flowering onset of Castilleja tenuiflora (with outliers included), an early-season nectar source for breeding Broad-tailed Hummingbirds (Selasphorus platycercus) at Finger Rock Canyon, Arizona, USA.
DOI: 10.6084/m9.figshare.3554139
title: Appendix C. Relationships between temperature and arrival of Broad-tailed Hummingbirds and flowering onset in its early-season nectar resources at the Rocky Mountain Biological Laboratory in Colorado, USA.

description: Relationships between temperature and arrival of Broad-tailed Hummingbirds and flowering onset in its early-season nectar resources at the Rocky Mountain Biological Laboratory in Colorado, USA.
DOI: 10.6084/m9.figshare.3554136
title: Appendix A. AIC values for variable selection.

description: AIC values for variable selection.
DOI: 10.6084/m9.figshare.3554136.v1
title: Appendix A. AIC values for variable selection.

description: AIC values for variable selection.
DOI: 10.6084/m9.figshare.3554133
title: Appendix B. Correlations among diversity metrics.

description: Correlations among diversity metrics.
DOI: 10.6084/m9.figshare.3554130
title: Appendix C. Individual species variances.

description: Individual species variances.
DOI: 10.6084/m9.figshare.3554127
title: Appendix A. A summary of phylogenetic signal tests.

description: A summary of phylogenetic signal tests.
DOI: 10.6084/m9.figshare.3554127.v1
title: Appendix A. A summary of phylogenetic signal tests.

description: A summary of phylogenetic signal tests.
DOI: 10.6084/m9.figshare.3554124
title: Appendix A. A schematic diagram showing measurements of floral disparity within communities.

description: A schematic diagram showing measurements of floral disparity within communities.
DOI: 10.6084/m9.figshare.3554124.v1
title: Appendix A. A schematic diagram showing measurements of floral disparity within communities.

description: A schematic diagram showing measurements of floral disparity within communities.
DOI: 10.6084/m9.figshare.3554121
title: Appendix B. Representation of six floral traits distributed across samples within the two-dimensional morphospace created by the first two PC axes.

description: Representation of six floral traits distributed across samples within the two-dimensional morphospace created by the first two PC axes.
DOI: 10.6084/m9.figshare.3554118
title: Supplement 1. Site and specimen data collected during biodiversity inventories of the Hengduan Mountains region.

description: File List Supplement_1.txt (md5: 7ce57a45aa2ade2476002a6ab018a005) Description Supplement_1.txt is a tab-separated file. It contains specimen locality data, information on the mean trait and site-specific trait measurements of samples, and site descriptions. 1. expedition_name<br> 2. latitude<br> 3. longitude<br> 4. lower_elevation<br> 5. upper_elevation<br> 6. locality_id<br> 7. collector_number<br> 8. species_epithet<br> 9. habitat type<br> 10. flower_color<br> 11. phyllotaxy<br> 12. spp. specific corolla tube range low<br> 13. spp. specific corolla tube range high<br> 14. spp. specific mean corolla tube<br> 15. spp. specific galea beak range low<br> 16. spp. specific galea beak range high<br> 17. spp. specific galea beak mean<br> 18. nectar presence or absence<br> 19. bee orientation<br> 20. position of stigma contact on bumble bees<br> 21. habitat type 2<br> 22. microhabitat<br> 23. plant_description<br> 24. locality_habitat
DOI: 10.6084/m9.figshare.3554115
title: Supplement 2. Genbank accession numbers of DNA sequences used in phylogeny reconstruction. Voucher information is provided for new sequences generated for this study.

description: File List Supplement_2.txt (md5: 91ebfca65bd6cfc123b253d0d8683b9d) Description Supplement_2.txt is a tab-separated file. Row names contain a species or sample name. The column names indicate accession and voucher labels for each of three genes. 1. Species name<br> 2. ITS Accession number<br> 3. ITS Voucher<br> 4. rps16 Accession number<br> 5. rps16 Voucher<br> 6. matK Accession Number<br> 7. matK Voucher
DOI: 10.6084/m9.figshare.3554115.v1
title: Supplement 2. Genbank accession numbers of DNA sequences used in phylogeny reconstruction. Voucher information is provided for new sequences generated for this study.

description: File List Supplement_2.txt (md5: 91ebfca65bd6cfc123b253d0d8683b9d) Description Supplement_2.txt is a tab-separated file. Row names contain a species or sample name. The column names indicate accession and voucher labels for each of three genes. 1. Species name<br> 2. ITS Accession number<br> 3. ITS Voucher<br> 4. rps16 Accession number<br> 5. rps16 Voucher<br> 6. matK Accession Number<br> 7. matK Voucher