cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.esug98
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cyclocheilichthys schoppeae)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025051-250811113504898/datasets/export for details.
DOI: 10.5281/zenodo.16912433
title: Polyploidy induction in Fercal grapevine rootstock – Flow cytometry data

description: This dataset contains processed flow cytometry outputs in the form of PNG images and Excel tables. These files include graphical representations and summarized numerical data used to assess ploidy levels in Fercal grapevine rootstock subjected to colchicine treatments in the presence and absence of dimethyl sulfoxide (DMSO). The dataset provides available visual and tabulated data corresponding to the manuscript.
DOI: 10.5281/zenodo.16912434
title: Polyploidy induction in Fercal grapevine rootstock – Flow cytometry data

description: This dataset contains processed flow cytometry outputs in the form of PNG images and Excel tables. These files include graphical representations and summarized numerical data used to assess ploidy levels in Fercal grapevine rootstock subjected to colchicine treatments in the presence and absence of dimethyl sulfoxide (DMSO). The dataset provides available visual and tabulated data corresponding to the manuscript.
DOI: 10.15468/dl.bwfzmh
title: Occurrence Download

description: A dataset containing 14639 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Trigona spinipes"
 ]
}

 The dataset includes 14639 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025801-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e233321
title: Health and healthcare behavior during the COVID-19 pandemic

description: We ran two surveys (repeated cross-sections) with a total sample size of 3,274 using the Ipsos Global Online Omnibus. The surveys included individuals 18-75 years of age residing in the US. The first survey (n=1,085) was conducted from July 10-14, 2020 and the second survey ran from May 24-29, 2023 (n=2,189). This data upload is both surveys together. Common survey questions include trust in key stakeholders (e.g., federal government, the healthcare system) and changes in household finances, healthcare utilization (e.g., annual preventive visits, receipt of pharmacy-based healthcare), preventive health care (e.g., influenza vaccination) and preventative behaviors (e.g. exercise, healthy eating) since the pandemic. Additional survey questions are self-reported mental and physical status, COVID status, vaccination likelihood and risk perceptions. The survey also has respondent characteristics.
description: included in dataset. provided by Ipsos
description: nationally representative quota (non-probability) sample from existing Ipsos panel with quotas set for age, gender, US region, and working status.
DOI: 10.3886/e233321v1
title: Health and healthcare behavior during the COVID-19 pandemic

description: We ran two surveys (repeated cross-sections) with a total sample size of 3,274 using the Ipsos Global Online Omnibus. The surveys included individuals 18-75 years of age residing in the US. The first survey (n=1,085) was conducted from July 10-14, 2020 and the second survey ran from May 24-29, 2023 (n=2,189). This data upload is both surveys together. Common survey questions include trust in key stakeholders (e.g., federal government, the healthcare system) and changes in household finances, healthcare utilization (e.g., annual preventive visits, receipt of pharmacy-based healthcare), preventive health care (e.g., influenza vaccination) and preventative behaviors (e.g. exercise, healthy eating) since the pandemic. Additional survey questions are self-reported mental and physical status, COVID status, vaccination likelihood and risk perceptions. The survey also has respondent characteristics.
description: included in dataset. provided by Ipsos
description: nationally representative quota (non-probability) sample from existing Ipsos panel with quotas set for age, gender, US region, and working status.
DOI: 10.5061/dryad.25nj1
title: Data from: Audio-visual interactions uniquely contribute to resolution of visual conflict in people possessing absolute pitch

description: Individuals possessing absolute pitch (AP) are able to identify a given
 musical tone or to reproduce it without reference to another tone. The
 present study sought to learn whether this exceptional auditory ability
 impacts visual perception under stimulus conditions that provoke visual
 competition in the form of binocular rivalry. Nineteen adult participants
 with 3 - 19 years of musical training were divided into two groups
 according to their performance on a task involving identification of the
 specific note associated with hearing a given musical pitch. During test
 trials lasting just over half a minute, participants dichoptically viewed
 a scrolling musical score presented to one eye and a drifting sinusoidal
 grating presented to the other eye; throughout the trial they pressed
 buttons to track the alternations in visual awareness produced by these
 dissimilar monocular stimuli. On "pitch-congruent" trials,
 participants heard an auditory melody that was congruent in pitch with the
 visual score, on "pitch-incongruent" trials they heard a
 transposed auditory melody that was congruent with the score in melody but
 not in pitch, and on "melody-incongruent" trials they heard an
 auditory melody completely different from the visual score. For both
 groups, the visual musical scores predominated over the gratings when the
 auditory melody was congruent compared to when it was incongruent.
 Moreover, the AP participants experienced greater predominance of the
 visual score when it was accompanied by the pitch-congruent melody
 compared to the same melody transposed in pitch; for non-AP musicians,
 pitch-congruent and pitch-incongruent trials yielded equivalent
 predominance. Analysis of individual durations of dominance re-vealed
 differential effects on dominance and suppression durations for AP and
 non-AP participants. These results reveal that AP is accompanied by a
 robust form of bisensory interac-tion between tonal frequencies and
 musical notation that boosts the salience of a visual score.
description: dataset_APThe file includes raw data of binocular rivalry tracking results in .mat format for each participant. Eye tracking data (.asc) per trial for each participant are also included.
DOI: 10.5061/dryad.t7f64
title: Data from: Simulated blast overpressure induces specific astrocyte injury in an ex vivo brain slice model

description: Exposure to explosive blasts can produce functional debilitation in the
 absence of brain pathology detectable at the scale of current diagnostic
 imaging. Transient (ms) overpressure components of the primary blast wave
 are considered to be potentially damaging to the brain. Astrocytes
 participate in neuronal metabolic maintenance, blood–brain barrier,
 regulation of homeostatic environment, and tissue remodeling. Damage to
 astrocytes via direct physical forces has the potential to disrupt local
 and global functioning of neuronal tissue. Using an ex vivo brain slice
 model, we tested the hypothesis that viable astrocytes within the slice
 could be injured simply by transit of a single blast wave consisting of
 overpressure alone. A polymer split Hopkinson pressure bar (PSHPB) system
 was adapted to impart a single positive pressure transient with a
 comparable magnitude to those that might be present inside the head. A
 custom built test chamber housing the brain tissue slice incorporated
 revised design elements to reduce fluid space and promote transit of a
 uniform planar waveform. Confocal microscopy, stereology, and morphometry
 of glial fibrillary acidic protein (GFAP) immunoreactivity revealed that
 two distinct astrocyte injury profiles were identified across a 4 hr
 post-test survival interval: (a) presumed conventional astrogliosis
 characterized by enhanced GFAP immunofluorescence intensity without
 significant change in tissue area fraction and (b) a process comparable to
 clasmatodendrosis, an autophagic degradation of distal processes that has
 not been previously associated with blast induced neurotrauma. Analysis of
 astrocyte branching revealed early, sustained, and progressive differences
 distinct from the effects of slice incubation absent overpressure testing.
 Astrocyte vulnerability to overpressure transients indicates a potential
 for significant involvement in brain blast pathology and emergent
 dysfunction. The testing platform can isolate overpressure injury
 phenomena to provide novel insight on physical and biological mechanisms.
description: PLOS_Supplemental
 DataThe archive contains 2
 folders, 1 for control and 1 for test images. Images are TIFF files
 generated in NIH ImageJ of maximum-intensity 2D projections generated from
 confocal image stacks. Original stacks can be provided upon email request.
 Each folder contains a key identifying treatment conditions for each
 image.
DOI: 10.5061/dryad.f5r0p
title: Data from: Seascape and life-history traits do not predict self-recruitment in a coral reef fish

description: The persistence and resilience of many coral reef species are dependent on
 rates of connectivity among sub-populations. However, despite increasing
 research efforts, the spatial scale of larval dispersal remains
 unpredictable for most marine metapopulations. Here, we assess patterns of
 larval dispersal in the angelfish Centropyge bicolor in Kimbe Bay, Papua
 New Guinea, using parentage and sibling reconstruction analyses based on
 23 microsatellite DNA loci. We found that, contrary to previous findings
 in this system, self-recruitment (SR) was virtually absent at both the
 reef (0.4–0.5% at 0.15 km2) and the lagoon scale (0.6–0.8% at approx. 700
 km2). While approximately 25% of the collected juveniles were identified
 as potential siblings, the majority of sibling pairs were sampled from
 separate reefs. Integrating our findings with earlier research from the
 same system suggests that geographical setting and life-history traits
 alone are not suitable predictors of SR and that high levels of localized
 recruitment are not universal in coral reef fishes.
description: Centropyge bicolor
 genotypic raw dataABI fragment analysis
 files used for microsatellite genotyping.RAW DATA
 C.bicolor.geneious
DOI: 10.5061/dryad.4r50gb0
title: Data from: DNA metabarcoding reveals the broad and flexible diet of a declining aerial insectivore

description: Aerial insectivores are highly mobile predators that feed on diverse prey
 items that have highly variable distributions. As such, investigating the
 diet, prey selection, and prey availability of aerial insectivores can be
 challenging. In this study, we used an integrated DNA barcoding method to
 investigate the diet and food supply of Barn Swallows, an aerial
 insectivore whose North American population has declined over the past 40
 years. We tested the hypotheses that Barn Swallows are generalist
 insectivores when provisioning their young and select prey based on size.
 We predicted that the diets of nestlings would contain a range of insect
 taxa but would be biased towards large prey items and that the diet of
 nestlings would change as prey availability changed. We collected insects
 using Malaise traps at ten breeding sites and identified specimens using
 standard DNA barcoding. The sequences from these insect specimens were
 used to create a custom reference database of prey species and their
 relative sizes for our study area. We identified insect prey items from
 nestling fecal samples by using high-throughput DNA sequencing and
 comparing the sequences to our custom reference database. Barn Swallows
 fed nestlings prey items from 130 families representing 13 orders but
 showed selection for larger prey items that were predominantly from seven
 dipteran families. Nestling diet varied both within and between breeding
 seasons as well as between breeding sites. This dietary flexibility
 suggests that Barn Swallows are able to adjust their provisioning to
 changing prey availability on the breeding grounds when feeding their
 nestlings. Our study demonstrates the utility of custom reference
 databases for linking the abundance and size of insect prey in the habitat
 with prey consumed when employing molecular methods for dietary analysis.
description: BARS Fecal
 SequencesRaw reads obtained from
 sequencing Barn Swallow fecal samples amplified using arthropod specific
 primers.Each fasta file represents a single fecal
 sample.Barn
 Swallow Diet Sequences.zip
DOI: 10.15468/dl.a5ka4p
title: Occurrence Download

description: A dataset containing 11687 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oophaga pumilio"
 ]
}

 The dataset includes 11687 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000412-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.84jk0
title: Data from: A circannual perspective on daily and total flight distances in a long-distance migratory raptor, the Montagu's harrier, Circus pygargus

description: Long-distance migrants are particularly recognized for the distances
 covered on migration, yet little is known about the distances they cover
 during the rest of the year. GPS-tracks of 29 Montagu's harriers from
 breeding areas in France, The Netherlands and Denmark showed that harriers
 fly between 35 653 and 88 049 km yr−1, of which on average only 28.5% is
 on migration. Mean daily distances during migration were 296 km d−1 in
 autumn and 252 km d−1 in spring. Surprisingly, males' daily distances
 during breeding (217 km d−1) were close to those during migration, whereas
 breeding females moved significantly less (101 km d−1) than males. In
 terms of flight distance, the breeding season seemed nearly as demanding
 as migration periods for males. During the six winter months, both sexes
 moved less (114 and 128 km d−1 for females and males, respectively) than
 during migration. Harriers therefore covered shorter daily distances
 during winter which might allow birds to compensate for the more demanding
 phases of migration and breeding.
description: Schlaich_etal_2017_BiolLetters_gps_tracking_data_20170410This file contains the GPS-tracking data of Montagu’s Harriers used for analyses on daily and total flight distances and contains the following columns: season (name of the bird, years), population (France, Netherlands, Denmark), sex, date_time (date and time in UTC), ann.rough (annotation of annual cycle phases: breeding, autumn migration, winter, spring migration), latitude, longitude, speed_2d (instantaneous speed measured by the GPS-device).Schlaich_etal_2017_BiolLetters_ high_resolution_data_20170410This file contains the high resolution GPS-tracking data of Montagu’s Harriers used to calculate correction factors according to sampling interval and contains the following columns: season (name of the bird, years), date_time (date and time in UTC), ann.rough (annotation of annual cycle phases: breeding, autumn migration, winter, spring migration), latitude, longitude, speed_2d (instantaneous speed measured by the GPS-device).
DOI: 10.15468/dd.y3346k
title: Dangermond Preserve GBIF Occurrences - 2026-01-26

description: Species occurrence records from GBIF filtered to the Dangermond Preserve boundary in Santa Barbara County, California. Data is maintained by The Nature Conservancy's Digital Twin project and updated nightly via GBIF API.
DOI: 10.5061/dryad.r711309
title: Data from: Post-embryonic development of Dalmanitina, and the evolution of facial suture fusion in Phacopina

description: A large sample of post-embryonic specimens of Dalmanitina proaeva elfrida
 and D. socialis from the Upper Ordovician (Sandbian to Katian) Prague
 Basin allows for the first reasonably complete ontogenetic sequence of
 Dalmanitoidea (Phacopina). The material provides an abundance of
 morphological information, including well-preserved marginal spines in
 protaspides and meraspides, and hypostome external surfaces throughout.
 The development of D. proaeva elfrida is unusual due to variability in
 timing of the first trunk articulation. While broadening our developmental
 understanding of Phacopina, a diverse group of phacopid trilobites, we are
 also able to study the evolution of their specializations in exoskeletal
 molting behavior. Adult phacopines, unlike most other trilobites, had
 fused facial sutures. This means that rather than molting through the
 Sutural Gape mode, characterized by opening of the facial sutures and
 separation of the librigenae, they disarticulated the entire cephalon in
 Salter’s mode of molting. For other phacopine clades (Phacopoidea) the
 transition to Salter’s mode occurs during the meraspid period or at the
 onset of holaspis, and its developmental timing is intraspecifically
 fixed. However, owing to the large sample size we can see that facial
 suture fusion likely occurred later in Dalmanitina, usually during the
 holaspid period, and was intraspecifically variable with holaspides of
 varying sizes showing unfused sutures. Further, D. proaeva elfrida
 specimens showed an initial librigenal-rostral plate fusion event, where
 the librigenae began as separate entities but appear fused with the
 rostral plate as one structure (the ‘Lower Cephalic Unit’) from M1, and
 are discarded as such during molting. Dalmanitoidea is considered to
 represent the first phacopine divergence, occurring earliest in the fossil
 record. This therefore provides insight into how linked morphologies and
 behaviors evolved, potentially suggesting the timing of facial suture
 fusion in Phacopina moved earlier during development and became more
 intraspecifically fixed over geological time.
description: Measurement and moulting
 data for Dalmanitina specimens used in the studySupplementary
 1Supplementary1_data_rev.xlsxAdditional photos of Dalmanitina specimens from the Czech Geological SurveySupplementary 2Supplementary 2.zip
DOI: 10.5061/dryad.3b95n
title: Data from: Phylogenetic treatment and taxonomic revision of the trapdoor spider genus Aptostichus Simon (Araneae, Mygalomorphae, Euctenizidae)

description: This systematic study documents the taxonomy, diversity, and distribution
 of 40 species of the predominately Californian trapdoor spider genus
 Aptostichus Simon, 1891. Thirty-three of these species are newly
 described: Aptostichus dantrippi, Aptostichus cabrillo, Aptostichus
 pennjillettei, Aptostichus asmodaeus, Aptostichus nateevansi, Aptostichus
 chiricahua, Aptostichus icenoglei, Aptostichus isabella, Aptostichus
 muiri, Aptostichus barackobamai, Aptostichus sinnombre, Aptostichus
 hedinorum, Aptostichus aguacaliente, Aptostichus chemehuevi, Aptostichus
 sarlacc, Aptostichus derhamgiulianii, Aptostichus anzaborrego, Aptostichus
 serrano, Aptostichus mikeradtkei, Aptostichus edwardabbeyi, Aptostichus
 killerdana, Aptostichus cahuilla, Aptostichus satleri, Aptostichus
 elisabethae, Aptostichus fornax, Aptostichus lucerne, Aptostichus fisheri,
 Aptostichus bonoi, Aptostichus cajalco, Aptostichus sierra, Aptostichus
 huntington, Aptostichus dorothealangeae, and Aptostichus chavezi. Most of
 these species are restricted to the California Floristic Province, a known
 biodiversity hotspot. Of the 40 recognized species, over half are
 considered to be imperiled or vulnerable and two have likely gone extinct
 over the past half-century; the conservation status of only 11 species is
 considered to be secure. Using 73 quantitative and qualitative
 morphological characters I propose a preliminary phylogeny for the genus
 that recognizes four major lineages: the Atomarius, Simus, Hesperus, and
 Sierra species groups. Additionally, the phylogenetic analysis indicates
 that adaptations favoring the invasion of the arid desert habitats of
 southern California have evolved multiple times across the group. The
 existence of both desert and non - desert species in three of the four
 species groups makes this genus an ideal candidate for the study of the
 evolutionary ecology of desert arthropods. A set of molecular characters
 based on the contiguous mitochondrial DNA genes 16S-tRNA valine-12S is
 used in an independent analysis to assist in placement of specimens into
 species. The taxonomy section explicitly identifies the concept employed
 in species delimitation. Niche based distribution models are constructed
 to predict the ranges of species for which an adequate number of sampling
 sites were known.
description: Molecular phylogenetic
 data sets and analysis resultsBayesian and maximum
 likelihood data sets, analyses and results file.molecularPhylogenetics.zipMorphological phylogenetic data sets and analysis resultsMorphological data set with tree and consensus tree files for equal and implied weight analysis.morphologicalPhylogenetics.zipAptostichus locality datalocalityData.zipTaxonomy Python ScriptsPython scripts (2) to assist in writing material examined sections and species descriptionsphythonTaxonomyScripts.zipSpecimen measurement datameasureData.zip
DOI: 10.5061/dryad.314b2
title: Data from: Genome scan reveals selection acting on genes linked to stress response in wild pearl millet

description: Uncovering genomic regions involved in adaption is a major goal in
 evolutionary biology. High-throughput sequencing now makes it possible to
 tackle this challenge in nonmodel species. Yet, despite the increasing
 number of methods targeted to specifically detect genomic footprints of
 selection, the complex demography of natural populations often causes high
 rates of false positive in gene discoveries. The aim of this study was to
 identify climate adaptations in wild pearl millet populations, Cenchrus
 americanus ssp. monodii. We focused on two climate gradients, one in Mali
 and one in Niger. We used a two-step strategy to limit false-positive
 outliers. First, we considered gradients as biological replicates and
 performed RNA sequencing of four populations at the extremities. We
 combined four methods—three based on differentiation among populations and
 one based on diversity patterns within populations—to identify outlier
 SNPs from a set of 87 218 high-quality SNPs. Among 11 155 contigs of pearl
 millet reference transcriptome, 540 exhibited selection signals as
 evidenced by at least one of the four methods. In a second step, we
 genotyped 762 samples in 11 additional populations distributed along the
 gradients using SNPs from the detected contigs and random SNPs as control.
 We further assessed selection on this large data set using a
 differentiation-based method and a method based on correlations with
 environmental variables based. Four contigs displayed consistent
 signatures between the four extreme and 11 additional populations, two of
 which were linked to abiotic and biotic stress responses.
description: CommandlinesBiinformatic command lines to obtain final VCFPearlMillet_SNPs_filteredFinal VCF filtered used for analyses. Raw sequencing reads have been deposited on the NCBI database