cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3870736_d7
title: Additional file 7: Table S2. of Dual RNA-seq reveals no plastic transcriptional response of the coccidian parasite Eimeria falciformis to host immune defenses

description: GO terms enriched in Ef-clusters in Fig. 4b. (CSV 18 kb)
DOI: 10.6084/m9.figshare.c.3870709_d15
title: Additional file 9: Table S7a. of Chromosome contacts in activated T cells identify autoimmune disease candidate genes

description: Autoimmune disease COGS gene prioritisation. Overall COGS gene scores (COGS_Overall_Gene_Score) for each gene and autoimmune disease are shown together with the prioritised category and score associated with that category (COGS_Category_Gene_Score) (Fig. 3). The ‘analysis’ column describes whether the input data was GWAS or ImmunoChip (ICHIP) and whether summary statistic (SS) or GUESSFM (GF) fine-mapping was used. ‘diff.expr’ indicates whether the gene was not expressed (NA) or, if expressed, whether there was differential expression at the FDR  0.5 that are analysed in this paper. (GZ 37 kb)
DOI: 10.6084/m9.figshare.c.3870739_d5.v1
title: Additional file 5: of Identification of microRNAs controlling hepatic mRNA levels for metabolic genes during the metabolic transition from embryonic to posthatch development in the chicken

description: All chicken target genes for let-7c, miR-20b, and miR-183 selected for validation in the RCAS experiment. Relative luciferase activities (relative to the scrambled control) and p-values are provided. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3870739_d5
title: Additional file 5: of Identification of microRNAs controlling hepatic mRNA levels for metabolic genes during the metabolic transition from embryonic to posthatch development in the chicken

description: All chicken target genes for let-7c, miR-20b, and miR-183 selected for validation in the RCAS experiment. Relative luciferase activities (relative to the scrambled control) and p-values are provided. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3870766_d1.v1
title: MOESM1 of 
                     Plasmodium vivax genetic diversity and heterozygosity in blood samples and resulting oocysts at the Thaiâ  Myanmar border

description: Additional file 1. Raw peak heights found in individual oocysts obtained from the five cases in which more than one allele was found at least one locus (in either blood or oocyst stages).
DOI: 10.6084/m9.figshare.c.3870751_d2.v1
title: Additional file 2: of Myosin repertoire expansion coincides with eukaryotic diversification in the Mesoproterozoic era

description: List of species, species abbreviations, and species taxonomy, for which myosins were identified and assembled. (XLS 298Â kb)
DOI: 10.6084/m9.figshare.c.3870766_d1
title: MOESM1 of 
                     Plasmodium vivax genetic diversity and heterozygosity in blood samples and resulting oocysts at the Thaiâ  Myanmar border

description: Additional file 1. Raw peak heights found in individual oocysts obtained from the five cases in which more than one allele was found at least one locus (in either blood or oocyst stages).
DOI: 10.6084/m9.figshare.c.3870751_d2
title: Additional file 2: of Myosin repertoire expansion coincides with eukaryotic diversification in the Mesoproterozoic era

description: List of species, species abbreviations, and species taxonomy, for which myosins were identified and assembled. (XLS 298Â kb)
DOI: 10.6084/m9.figshare.c.3870784_d3
title: Additional file 3: Table S2. of Phylo_dCor: distance correlation as a novel metric for phylogenetic profiling

description: Phylogenetic profile matrices. The phylogenetic profiles derived for E. coli and S. cerevisiae using the reference set RS1. (XLSX 68277Â kb)
DOI: 10.6084/m9.figshare.c.3870790_d2.v1
title: Additional file 2: Table S2. of Analysis of the genome sequence of Phomopsis longicolla: a fungal pathogen causing Phomopsis seed decay in soybean

description: A list of horizontal transferred genes identified in the genome of Phomopsis longicolla isolate MSPL 10â  6. (XLSX 75Â kb)
DOI: 10.6084/m9.figshare.c.3870790_d2
title: Additional file 2: Table S2. of Analysis of the genome sequence of Phomopsis longicolla: a fungal pathogen causing Phomopsis seed decay in soybean

description: A list of horizontal transferred genes identified in the genome of Phomopsis longicolla isolate MSPL 10â  6. (XLSX 75Â kb)
DOI: 10.6084/m9.figshare.c.3870796_d1.v1
title: Additional file 1: Table S1. of Generation of expressed sequence tags for discovery of genes responsible for floral traits of Chrysanthemum morifolium by next-generation sequencing technology

description: Annotations of contigs and clusters in this study. (XLSX 18507Â kb)
DOI: 10.6084/m9.figshare.c.3870793_d2
title: Additional file 2: of An assessment of healthcare professionalsâ   knowledge about and attitude towards influenza vaccination in Freetown Sierra Leone: a cross-sectional study

description: SPSS dataset. (SAV 851 kb)
DOI: 10.6084/m9.figshare.c.3870793_d2.v1
title: Additional file 2: of An assessment of healthcare professionalsâ   knowledge about and attitude towards influenza vaccination in Freetown Sierra Leone: a cross-sectional study

description: SPSS dataset. (SAV 851 kb)
DOI: 10.6084/m9.figshare.c.3870796_d1
title: Additional file 1: Table S1. of Generation of expressed sequence tags for discovery of genes responsible for floral traits of Chrysanthemum morifolium by next-generation sequencing technology

description: Annotations of contigs and clusters in this study. (XLSX 18507Â kb)
DOI: 10.6084/m9.figshare.c.3870796_d2.v1
title: Additional file 2: Table S2. of Generation of expressed sequence tags for discovery of genes responsible for floral traits of Chrysanthemum morifolium by next-generation sequencing technology

description: Gene accessions used in a phylogenetic tree of class-B proteins. (XLSX 26Â kb)
DOI: 10.15468/dl.gn84a4
title: Occurrence Download

description: A dataset containing 859 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma barbouri Kraus & Petranka, 1989)"
 ]
}

 The dataset includes 859 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039343-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3870796_d2
title: Additional file 2: Table S2. of Generation of expressed sequence tags for discovery of genes responsible for floral traits of Chrysanthemum morifolium by next-generation sequencing technology

description: Gene accessions used in a phylogenetic tree of class-B proteins. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.c.3870820_d3.v1
title: Additional file 3: of The quality of systematic reviews about interventions for refractive error can be improved: a review of systematic reviews

description: Review characteristics. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3870796_d5.v1
title: Additional file 5: Table S5. of Generation of expressed sequence tags for discovery of genes responsible for floral traits of Chrysanthemum morifolium by next-generation sequencing technology

description: Gene accessions used in the phylogenetic tree of TPS proteins. (XLSX 28Â kb)
DOI: 10.6084/m9.figshare.c.3870820_d3
title: Additional file 3: of The quality of systematic reviews about interventions for refractive error can be improved: a review of systematic reviews

description: Review characteristics. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3870796_d5
title: Additional file 5: Table S5. of Generation of expressed sequence tags for discovery of genes responsible for floral traits of Chrysanthemum morifolium by next-generation sequencing technology

description: Gene accessions used in the phylogenetic tree of TPS proteins. (XLSX 28Â kb)
DOI: 10.6084/m9.figshare.c.3870796_d6.v1
title: Additional file 6: Table S6. of Generation of expressed sequence tags for discovery of genes responsible for floral traits of Chrysanthemum morifolium by next-generation sequencing technology

description: Sequences of an adaptor. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3870796_d6
title: Additional file 6: Table S6. of Generation of expressed sequence tags for discovery of genes responsible for floral traits of Chrysanthemum morifolium by next-generation sequencing technology

description: Sequences of an adaptor. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3870838_d1.v1
title: Additional file 10: Table S4. of BET bromodomain inhibitors and agonists of the beta-2 adrenergic receptor identified in screens for compounds that inhibit DUX4 expression in FSHD muscle cells

description: Retesting of adrenergic receptor agonists. (XLSX 38Â kb)
DOI: 10.6084/m9.figshare.c.3870838_d1
title: Additional file 10: Table S4. of BET bromodomain inhibitors and agonists of the beta-2 adrenergic receptor identified in screens for compounds that inhibit DUX4 expression in FSHD muscle cells

description: Retesting of adrenergic receptor agonists. (XLSX 38Â kb)
DOI: 10.15468/dl.cf67mf
title: Occurrence Download

description: A dataset containing 278 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "TaxonKey is Axis axis (Erxleben, 1777)",
 "Year 2020-2021"
 ]
}

 The dataset includes 278 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039344-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3870805_d12
title: Additional file 5: of RNA-sequence data normalization through in silico prediction of reference genes: the bacterial response to DNA damage as case study

description: Moose 2 -normalized RNA-seq data. The data sheet contains the RNA-seq read counts after moose 2 normalization and p-values for cross-condition comparisons. (XLSX 723 kb)
DOI: 10.6084/m9.figshare.c.3870838_d12.v1
title: Additional file 9: Table S3. of BET bromodomain inhibitors and agonists of the beta-2 adrenergic receptor identified in screens for compounds that inhibit DUX4 expression in FSHD muscle cells

description: Compounds present in the Pharmakon 1600 library. (XLSX 125Â kb)
DOI: 10.6084/m9.figshare.c.3870838_d12
title: Additional file 9: Table S3. of BET bromodomain inhibitors and agonists of the beta-2 adrenergic receptor identified in screens for compounds that inhibit DUX4 expression in FSHD muscle cells

description: Compounds present in the Pharmakon 1600 library. (XLSX 125Â kb)
DOI: 10.48610/8a1ccdf
title: Multimodal Entity Linking Evaluation Dataset for Art

description: MELArt Dataset. The dataset adds named entity linking annotations to the sentences in the Artpedia dataset (https://aimagelab.ing.unimore.it/imagelab/page.asp?IdPage=35). The files inside MELArt contain the following information: el_candidates.jsonl: all the candidates, each line is a json file containing the basic information extracted from Wikidata for each candidate. melart_annotations.json: contains the full set of annotations. Each element is a painting that includes the basic information from Artpedia, the depictions extracted from Wikidata, and the annotated mentions for each of the sentences. Each painting has a corresponding split and the annotations from the test split are manual annotations. melart_automatic_annotations.json: contains the automatically generated annotations before integrating the manual annotations. images/image_urls.txt: Each line corresponds to the name of the file for Wikimedia Commons or the full URL of images not part of Commons needed for the dataset. For downloading the images we recommend to use the image crawler from the Github repository: https://github.com/HPI-Information-Systems/MELArt/blob/main/crawl_images.py The full code used to produce the dataset can be found at https://github.com/HPI-Information-Systems/MELArt
DOI: 10.5281/zenodo.14047141
title: NEOntometrics - Evaluation Dataset

description: This is the dataset for the evaluation of the NEOntometrics application (cf. http://neontometrics.com/ and https://github.com/achiminator/NEOntometrics).

The Evidence_Evaluation.ipynb and data.csv is the dataset for the evaluation in section 4. The two other files contain the evaluation of computational performance of section 5.3.
DOI: 10.15468/dl.5wny3r
title: Occurrence Download

description: A dataset containing 859 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma barbouri Kraus & Petranka, 1989)"
 ]
}

 The dataset includes 859 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039346-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28053878
title: Data

description: This empirical study assesses smallholder farmers’ adaptation options to climate change or variability for achieving food security at varied rate of impact
DOI: 10.6084/m9.figshare.c.3871999_d3.v1
title: Additional file 3 of HiMMe: using genetic patterns as a proxy for genome assembly reliability assessment

description: ’Supplementary_file3.zip’, Title: ’Data from GAGE’. Description: contains all real data as well as the pertinent results. (ZIP 18,698 kb)
DOI: 10.6084/m9.figshare.c.3871999_d3
title: Additional file 3 of HiMMe: using genetic patterns as a proxy for genome assembly reliability assessment

description: ’Supplementary_file3.zip’, Title: ’Data from GAGE’. Description: contains all real data as well as the pertinent results. (ZIP 18,698 kb)
DOI: 10.5281/zenodo.13845701
title: FAIR Jupyter Knowledge Graph

description: FAIR Jupyter is a knowledge graph representation of Dataset of a Study of Computational reproducibility of Jupyter notebooks from biomedical publications. This repository contains the data, mapping, and the RDF files for each entity represented in the FAIR Jupyter KG.

Folder structure:

data: contains the CSV files that are exported for each entity type from the original sqlite database.

mapping: contains the RML and YARRML mapping files for each entity type of FAIR Jupyter KG.

kg: contains the RDF files created in N-Triples format for each entity type of FAIR Jupyter KG.

The code for creating the FAIR Jupyter Knowledge graph is available here:  https://github.com/fusion-jena/fairjupyter
DOI: 10.6084/m9.figshare.c.3872023_d1.v1
title: MOESM1 of Report on the development of putative functional SSR and SNP markers in passion fruits

description: Additional file 1. Table S1: Passion fruit transcripts used in the search for SSRs. Table S2: 122 transcript sequences from Passiflora edulis that were used for designing the primers. Table S3: Putative gene function of passion fruit transcripts containing SNPs (A) and SSRs (B).
DOI: 10.6084/m9.figshare.c.3872023_d1
title: MOESM1 of Report on the development of putative functional SSR and SNP markers in passion fruits

description: Additional file 1. Table S1: Passion fruit transcripts used in the search for SSRs. Table S2: 122 transcript sequences from Passiflora edulis that were used for designing the primers. Table S3: Putative gene function of passion fruit transcripts containing SNPs (A) and SSRs (B).
DOI: 10.6084/m9.figshare.c.3872017_d3.v1
title: Additional file 3: Table S1. of Thioester-containing proteins regulate the Toll pathway and play a role in Drosophila defence against microbial pathogens and parasitoid wasps

description: List of primers used in this study. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3872017_d4.v1
title: Additional file 4: Table S2. of Thioester-containing proteins regulate the Toll pathway and play a role in Drosophila defence against microbial pathogens and parasitoid wasps

description: Additional file containing raw data generated in this study. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.c.3872017_d3
title: Additional file 3: Table S1. of Thioester-containing proteins regulate the Toll pathway and play a role in Drosophila defence against microbial pathogens and parasitoid wasps

description: List of primers used in this study. (XLSX 9 kb)
DOI: 10.15468/dl.7ndaby
title: Occurrence Download

description: A dataset containing 358581 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is EOD – eBird Observation Dataset",
 "GadmGid is USA.10_1",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Ammodramus savannarum floridanus (Mearns, 1902), Ammospiza maritima mirabilis (A.H.Howell, 1919), Grus americana (Linnaeus, 1758), Sterna dougallii Montagu, 1813, Setophaga kirtlandii (S.F.Baird, 1852), Rostrhamus sociabilis (Vieillot, 1817), Picoides borealis (Vieillot, 1809), Mycteria americana Linnaeus, 1758, Laterallus jamaicensis (Gmelin, 1789), Charadrius melodus Ord, 1824, Caracara plancus (J.F.Miller, 1777), Ammodramus savannarum (J.F.Gmelin, 1789), Calidris canutus (Linnaeus, 1758), Aphelocoma coerulescens (Bosc, 1795))",
 "Year 2018-2024"
 ]
}

 The dataset includes 358581 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039335-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3872044_d1
title: Additional file 10: Table ST5. of Dual transcriptome of the immediate neutrophil and Candida albicans interplay

description: Differential regulation of arginine metabolism genes in C. albicans. DEGs involved in arginine metabolism of yeast and hypha C. albicans infecting neutrophils and NETs are displayed. The transcript level is indicated by fold change (log2). (XLS 41 kb)
DOI: 10.6084/m9.figshare.c.3872056_d1.v1
title: Additional file 1: of Determinants of first-time utilization of long-term care services in the Netherlands: an observational record linkage study

description: Selection and definition of chronic diseases used in study. Diseases are defined using the ICPC-1 classification for primary care. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3872056_d2.v1
title: Additional file 2: of Determinants of first-time utilization of long-term care services in the Netherlands: an observational record linkage study

description: Model selection. Statistical information and description of the model selection process. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3872056_d1
title: Additional file 1: of Determinants of first-time utilization of long-term care services in the Netherlands: an observational record linkage study

description: Selection and definition of chronic diseases used in study. Diseases are defined using the ICPC-1 classification for primary care. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3872056_d2
title: Additional file 2: of Determinants of first-time utilization of long-term care services in the Netherlands: an observational record linkage study

description: Model selection. Statistical information and description of the model selection process. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3872056_d3.v1
title: Additional file 3: of Determinants of first-time utilization of long-term care services in the Netherlands: an observational record linkage study

description: Statistical parameters final models. Statistical addendum for models in TablesÂ 5, 6 and 7. Contains coefficients, confidence intervals and p-values for all determinants. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.c.3872056_d3
title: Additional file 3: of Determinants of first-time utilization of long-term care services in the Netherlands: an observational record linkage study

description: Statistical parameters final models. Statistical addendum for models in TablesÂ 5, 6 and 7. Contains coefficients, confidence intervals and p-values for all determinants. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.c.3872056_d4.v1
title: Additional file 4: of Determinants of first-time utilization of long-term care services in the Netherlands: an observational record linkage study

description: Extended versions of TablesÂ 5 and 6, including outcomes for 10-K cross-validation of the models. For each model sensitivity, specificity, threshold, accuracy, precision and negative predictive value are specified. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3872044_d2.v1
title: Additional file 11: Table ST6 A-D. of Dual transcriptome of the immediate neutrophil and Candida albicans interplay

description: Quantification results. Comprehensive gene quantification table of neutrophil transcriptome in read counts (A) and in RPKM (B) as well as of Candida transcriptome in read counts (C) and in RPKM (D). (XLSX 18989 kb)
DOI: 10.3535/w4v-ndf-kgh
title: Hydroides norvegica Gunnerus, 1768

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yl3-gx3-2gm
title: Hydroides norvegica Gunnerus, 1768

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3q3-2qt-tlz
title: Ficopomatus Southern, 1921

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/als-fm0-2b4
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/znc-k66-jjl
title: Serpula (Eupomatus)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0hr-z93-aya
title: Hydroides norvegica Gunnerus, 1768

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1ax-kjc-mhb
title: Hydroides norvegica Gunnerus, 1768

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3872074_d5
title: MOESM1 of Environmental drivers of Ixodes ricinus abundance in forest fragments of rural European landscapes

description: Additional file 1. Meta-data on study setup. A table outlining the most important meta-data, such as center of each studied landscape window, dates of sampling, number of forest patches and a couple of landscape metrics to characterize the respective landscapes.
DOI: 10.3535/37n-h10-zxs
title: Spirobranchus tetraceros (Schmarda, 1861)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zqw-y5m-wrf
title: Spirobranchus tetraceros (Schmarda, 1861)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3872077_d2.v1
title: Additional file 2: of Genome-wide analysis and expression profiling of zinc finger homeodomain (ZHD) family genes reveal likely roles in organ development and stress responses in tomato

description: Table S1. List of primers used for qRT-PCR analysis and their sequence, product size, primer length, primer-designing site, GC%, and melting temperature. Table S2. Pairwise identities and divergence between paralogous pairs of ZHD genes from tomato, and details about the segmental duplication of these genes. Table S3. Putative cis-elements &gt;5Â bp identified in 22 SlZHD genes from Solanum lycopersicum using the PlantCARE database (XLSX 43 kb)
DOI: 10.3535/ezd-esl-vvs
title: Hydroides brachyacantha Rioja, 1941

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.14515166
title: The relevance of the use of ionic chromatography for the quantification of soluble salts in the analysis of built heritage: Improving the European norms
DOI: 10.5281/zenodo.14515167
title: The relevance of the use of ionic chromatography for the quantification of soluble salts in the analysis of built heritage: Improving the European norms
DOI: 10.6084/m9.figshare.c.3872074_d6.v1
title: MOESM2 of Environmental drivers of Ixodes ricinus abundance in forest fragments of rural European landscapes

description: Additional file 2. Focal variables as drivers of tick abundances. An extensive list of all focal variables considered in this study. They are classified according to the driver groups outline in the methods section.