cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19327148.v1
title: Additional file 5 of A neurodegenerative disease landscape of rare mutations in Colombia due to founder effects

description: Additional file 5: Table S4. Mitochondrial haplogroups of the probands.
DOI: 10.6084/m9.figshare.19327151.v1
title: Additional file 6 of A neurodegenerative disease landscape of rare mutations in Colombia due to founder effects

description: Additional file 6: Table S5. Y chromosome haplogroups of the male probands.
DOI: 10.6084/m9.figshare.19327151
title: Additional file 6 of A neurodegenerative disease landscape of rare mutations in Colombia due to founder effects

description: Additional file 6: Table S5. Y chromosome haplogroups of the male probands.
DOI: 10.6084/m9.figshare.19327157
title: Additional file 8 of A neurodegenerative disease landscape of rare mutations in Colombia due to founder effects

description: Additional file 8: Table S6. Pathogenic variants identified in disease causing genes with additional information of the carriers.
DOI: 10.6084/m9.figshare.19327157.v1
title: Additional file 8 of A neurodegenerative disease landscape of rare mutations in Colombia due to founder effects

description: Additional file 8: Table S6. Pathogenic variants identified in disease causing genes with additional information of the carriers.
DOI: 10.6084/m9.figshare.19327160.v1
title: Additional file 9 of A neurodegenerative disease landscape of rare mutations in Colombia due to founder effects

description: Additional file 9: Table S7. Phenotypic information of the carriers of pathogenic variants in disease causing genes.
DOI: 10.6084/m9.figshare.19327160
title: Additional file 9 of A neurodegenerative disease landscape of rare mutations in Colombia due to founder effects

description: Additional file 9: Table S7. Phenotypic information of the carriers of pathogenic variants in disease causing genes.
DOI: 10.6084/m9.figshare.18585744
title: Additional file 1 of Mitonuclear incompatibility as a hidden driver behind the genome ancestry of African admixed cattle

description: Additional file 1: Table S1. Summary of genome re-sequencing using whole-genome sequencing data.
DOI: 10.6084/m9.figshare.18585744.v1
title: Additional file 1 of Mitonuclear incompatibility as a hidden driver behind the genome ancestry of African admixed cattle

description: Additional file 1: Table S1. Summary of genome re-sequencing using whole-genome sequencing data.
DOI: 10.6084/m9.figshare.18585747
title: Additional file 2 of Mitonuclear incompatibility as a hidden driver behind the genome ancestry of African admixed cattle

description: Additional file 2: Table S2. Summary of mitochondrial genome sequences.
DOI: 10.6084/m9.figshare.18585747.v1
title: Additional file 2 of Mitonuclear incompatibility as a hidden driver behind the genome ancestry of African admixed cattle

description: Additional file 2: Table S2. Summary of mitochondrial genome sequences.
DOI: 10.6084/m9.figshare.18585753.v1
title: Additional file 4 of Mitonuclear incompatibility as a hidden driver behind the genome ancestry of African admixed cattle

description: Additional file 4: Dataset S1. Bos taurus and Bos indicus cattle mitochondrial genome sequences generated from 216 whole-genome sequencing data.
DOI: 10.6084/m9.figshare.18585753
title: Additional file 4 of Mitonuclear incompatibility as a hidden driver behind the genome ancestry of African admixed cattle

description: Additional file 4: Dataset S1. Bos taurus and Bos indicus cattle mitochondrial genome sequences generated from 216 whole-genome sequencing data.
DOI: 10.6084/m9.figshare.19327219
title: Additional file 10 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 10. Statistics of numbers of TF types in the responsive genes.
DOI: 10.6084/m9.figshare.19327219.v1
title: Additional file 10 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 10. Statistics of numbers of TF types in the responsive genes.
DOI: 10.6084/m9.figshare.19327222
title: Additional file 11 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 11. Numbers of DT, DTHT, and HT responsive genes in WGCNA modules.
DOI: 10.6084/m9.figshare.19327222.v1
title: Additional file 11 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 11. Numbers of DT, DTHT, and HT responsive genes in WGCNA modules.
DOI: 10.6084/m9.figshare.19327231
title: Additional file 12 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 12. GO enrichment of genes in co-expression modules.
DOI: 10.6084/m9.figshare.19327234
title: Additional file 13 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 13. List of switchgrass genes that have best Arabidopsis hit in droughtDB.
DOI: 10.6084/m9.figshare.19327234.v1
title: Additional file 13 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 13. List of switchgrass genes that have best Arabidopsis hit in droughtDB.
DOI: 10.6084/m9.figshare.19327231.v1
title: Additional file 12 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 12. GO enrichment of genes in co-expression modules.
DOI: 10.6084/m9.figshare.19327237
title: Additional file 14 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 14. List of primers for qRT-PCR validation of DT and DTHT genes.
DOI: 10.6084/m9.figshare.19327237.v1
title: Additional file 14 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 14. List of primers for qRT-PCR validation of DT and DTHT genes.
DOI: 10.6084/m9.figshare.19327240
title: Additional file 1 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 1. Summary statistics of the RNA-Seq reads.
DOI: 10.6084/m9.figshare.19327240.v1
title: Additional file 1 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 1. Summary statistics of the RNA-Seq reads.
DOI: 10.6084/m9.figshare.19327249
title: Additional file 4 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 4. FPKM values of genes with WGCNA module numbers.
DOI: 10.6084/m9.figshare.19327249.v1
title: Additional file 4 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 4. FPKM values of genes with WGCNA module numbers.
DOI: 10.6084/m9.figshare.19327252
title: Additional file 5 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 5. List of DEGs with annotation.
DOI: 10.6084/m9.figshare.19327252.v1
title: Additional file 5 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 5. List of DEGs with annotation.
DOI: 10.6084/m9.figshare.19327258
title: Additional file 7 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 7. KEGG enrichment analysis using clusterProfiler.
DOI: 10.6084/m9.figshare.19327261
title: Additional file 8 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 8. List of TFs in switchgrass.
DOI: 10.6084/m9.figshare.19327255
title: Additional file 6 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 6. GO enrichment analysis using agriGO.
DOI: 10.6084/m9.figshare.19327255.v1
title: Additional file 6 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 6. GO enrichment analysis using agriGO.
DOI: 10.6084/m9.figshare.19327261.v1
title: Additional file 8 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 8. List of TFs in switchgrass.
DOI: 10.6084/m9.figshare.19327258.v1
title: Additional file 7 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 7. KEGG enrichment analysis using clusterProfiler.
DOI: 10.6084/m9.figshare.19327264
title: Additional file 9 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 9. List of DT, DTHT, and HT responsive TFs.
DOI: 10.6084/m9.figshare.19327264.v1
title: Additional file 9 of Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses

description: Additional file 9. List of DT, DTHT, and HT responsive TFs.
DOI: 10.6084/m9.figshare.19327294
title: Additional file 4 of Plastome phylogenomics and historical biogeography of aquatic plant genus Hydrocharis (Hydrocharitaceae)

description: Additional file 4: Table S1. Distribution of SSRs in plastomes of Hydrocharis species and Limnobium laevigatum.
DOI: 10.6084/m9.figshare.19327294.v1
title: Additional file 4 of Plastome phylogenomics and historical biogeography of aquatic plant genus Hydrocharis (Hydrocharitaceae)

description: Additional file 4: Table S1. Distribution of SSRs in plastomes of Hydrocharis species and Limnobium laevigatum.
DOI: 10.6084/m9.figshare.19327300
title: Additional file 1 of Pathophysiological significance of increased α-synuclein deposition in sympathetic nerves in Parkinson’s disease: a post-mortem observational study

description: Additional file 1. Demographic and individual data of control subjects (CTRL) and patients with Parkinson’s disease (PD). Individual values for immunoreactive signal intensities and neurochemical data from scalp skin, submandibular gland, and myocardium were tabulated. Mean values ± SEM are also shown. Other abbreviations: α-Syn = α-synuclein; Coloc. Index = α-synuclein-tyrosine hydroxylase colocalization index; cTnT = cardiac troponin T; DA = dopamine; DHPG = 3,4-dihydroxyphenylglycol; DOPAC = 3,4-dihydroxyphenylacetic acid; NE = norepinephrine; PD = Parkinson’s disease; PMI = post-mortem intervals; SMA = smooth muscle actin; SMG = submandibular gland; TH = tyrosine hydroxylase.
DOI: 10.6084/m9.figshare.19327300.v1
title: Additional file 1 of Pathophysiological significance of increased α-synuclein deposition in sympathetic nerves in Parkinson’s disease: a post-mortem observational study

description: Additional file 1. Demographic and individual data of control subjects (CTRL) and patients with Parkinson’s disease (PD). Individual values for immunoreactive signal intensities and neurochemical data from scalp skin, submandibular gland, and myocardium were tabulated. Mean values ± SEM are also shown. Other abbreviations: α-Syn = α-synuclein; Coloc. Index = α-synuclein-tyrosine hydroxylase colocalization index; cTnT = cardiac troponin T; DA = dopamine; DHPG = 3,4-dihydroxyphenylglycol; DOPAC = 3,4-dihydroxyphenylacetic acid; NE = norepinephrine; PD = Parkinson’s disease; PMI = post-mortem intervals; SMA = smooth muscle actin; SMG = submandibular gland; TH = tyrosine hydroxylase.
DOI: 10.26066/rds.35988
title: Bird Diversity In The Far Eastern Himalayan Landscape

description: This checklist of bird diversity in the Far Eastern Himalayan Landscape (which covers parts of China, India, and Myanmar) contains a total of 908 species extracted from the literature on the landscape, including several peer-reviewed journals, books/chapters, and published reports.
DOI: 10.6084/m9.figshare.19326638
title: More in-depth supplementary material of "Niabella beijingensis sp. nov. and Thermomonas beijingensis sp. nov., two bacteria from constructed wetland"

description: Supplementary data for 'Niabella beijingensis sp. nov. and Thermomonas beijingensis sp. nov., two bacteria from constructed wetland' as published in <i>International Journal of Systematic and Evolutionary Microbiology.</i>
DOI: 10.6084/m9.figshare.19326638.v1
title: More in-depth supplementary material of "Niabella beijingensis sp. nov. and Thermomonas beijingensis sp. nov., two bacteria from constructed wetland"

description: Supplementary data for 'Niabella beijingensis sp. nov. and Thermomonas beijingensis sp. nov., two bacteria from constructed wetland' as published in <i>International Journal of Systematic and Evolutionary Microbiology.</i>
DOI: 10.25919/k9zt-0034
title: Data matrices and phylogenetic tree of Pogonolepis (Asteraceae)

description: Data matrices and phylogenetic tree of Pogonolepis (Asteraceae) for species delimitation study.
DOI: 10.18112/openneuro.ds003993.v1.0.0
title: Inter-individual deep image reconstruction
DOI: 10.5281/zenodo.5895329
title: Genome-wide DNA methylation profiling identifies epigenetic signatures of β-lactams induced fatal anaphylactic shock

description: Drug hypersensitivity is one of the most frequent causes of anaphylaxis in adults, of which antibiotics are the most common culprits, particularly β-lactams induced anaphylactic shock deaths. We provided the genome wide DNA methylation profiling study of PBMC from 14 individuals peripheral venous blood samples. Illumina Infinium Human Methylation EPIC BeadChip was used. Among the 14 individuals, 8 patients were died from β-lactams induced anaphylactic shock, 6 healthy individuals were controls. Inclusion criteria for the β-lactams induced anaphylactic shock as follows: ①A clear history of β-lactams transfusion or components of β-lactams detected from blood (or skin of suspicious infusion site); ②Shock symptoms occurred after infusion of β-lactams and died within a short period of time; ③The immunohistochemical results of throat, lung and gastrointestinal tissues showed that tryptase or chymase were mostly positive expression; ④ Excluding other causes (disease, poisoning) of death; ⑤ No decay occurred in the corpse.Inclusion criteria for controls as follows: ① Healthy, no previous common underlying diseases and no history of genetic disease; ② No history of allergies to drugs, food, pollen and so on; ③Skin prick test (SPT) is negative, allergen-specific IgE (sIgE)&lt; 100IU/mL; the skin test results of β-lactam drugs were negative.
DOI: 10.5281/zenodo.5895328
title: Genome-wide DNA methylation profiling identifies epigenetic signatures of β-lactams induced fatal anaphylactic shock

description: Drug hypersensitivity is one of the most frequent causes of anaphylaxis in adults, of which antibiotics are the most common culprits, particularly β-lactams induced anaphylactic shock deaths. We provided the genome wide DNA methylation profiling study of PBMC from 14 individuals peripheral venous blood samples. Illumina Infinium Human Methylation EPIC BeadChip was used. Among the 14 individuals, 8 patients were died from β-lactams induced anaphylactic shock, 6 healthy individuals were controls. Inclusion criteria for the β-lactams induced anaphylactic shock as follows: ①A clear history of β-lactams transfusion or components of β-lactams detected from blood (or skin of suspicious infusion site); ②Shock symptoms occurred after infusion of β-lactams and died within a short period of time; ③The immunohistochemical results of throat, lung and gastrointestinal tissues showed that tryptase or chymase were mostly positive expression; ④ Excluding other causes (disease, poisoning) of death; ⑤ No decay occurred in the corpse.Inclusion criteria for controls as follows: ① Healthy, no previous common underlying diseases and no history of genetic disease; ② No history of allergies to drugs, food, pollen and so on; ③Skin prick test (SPT) is negative, allergen-specific IgE (sIgE)&lt; 100IU/mL; the skin test results of β-lactam drugs were negative.
DOI: 10.26066/rds.1973042
title: Floristic diversity in the Far Eastern Himalayan Landscape
DOI: 10.6084/m9.figshare.17985578
title: Inter-individual deep image reconstruction

description: This repository contains preprocessed fMRI data used in<br>Inter-individual deep image reconstruction <br><br>Raw fMRI data is available at OpenNeuro:<br>https://openneuro.org/datasets/ds001506/versions/1.3.1<br>https://openneuro.org/datasets/ds003430/versions/1.1.1 <br>https://openneuro.org/datasets/ds003993/versions/1.0.0<br>The code that support the findings of the study is available from our GitHub repositories: inter-individual deep image reconstruction<br>feature decodingimage reconstruction<br>
DOI: 10.5281/zenodo.6339774
title: Control T-cell receptor (TCR) alpha and beta chain nucleotide and amino acid sequences from human and mouse

description: A dataset of pooled T-cell receptor (TCR) sequences for TCR alpha and beta chains of human and mouse. Sequences are obtained from various samples of healthy individuals/mice using our conventional protocols: see for example [Britanova et al "Dynamics of individual T cell repertoires: from cord blood to centenarians" The Journal of Immunology 2016] and [Izraelson et al. "Comparative analysis of murine T‐cell receptor repertoires." Immunology 2018]. The sequences are stored as gzipped clonotype tables in VDJtools format, see [https://vdjtools-doc.readthedocs.io/en/master/input.html#vdjtools-format]. This control dataset can be used as a proxy for a generative VDJ rearrangement model to estimate the expected frequency distribution of TCRs and check for enrichment of rare TCR clonotypes and groups of similar TCR sequences. For the implementation of the enrichment analysis, please see CalcDegreeStats routine from VDJtools software, see [https://vdjtools-doc.readthedocs.io/en/master/annotate.html#calcdegreestats]. Files named "human.tra.strict.txt.gz", etc are pools of random/naive TCR clonotypes containing unique V/J/CDR3 nucleotide sequence combinations observed in data. The pools.zip file is used for TCR motif inference in VDJdb database [https://github.com/antigenomics/vdjdb-motifs], it contains human.tra.aa.txt, etc files that contain random/naive TCR clonotypes grouped by CDR3 amino acid sequence with the most frequent representative V and J.
DOI: 10.5281/zenodo.1318985
title: Control T-cell receptor (TCR) alpha and beta chain nucleotide and amino acid sequences from human and mouse

description: A dataset of pooled T-cell receptor (TCR) sequences for TCR alpha and beta chains of human and mouse. Sequences are obtained from various samples of healthy individuals/mice using our conventional protocols: see for example [Britanova et al "Dynamics of individual T cell repertoires: from cord blood to centenarians" The Journal of Immunology 2016] and [Izraelson et al. "Comparative analysis of murine T‐cell receptor repertoires." Immunology 2018]. The sequences are stored as gzipped clonotype tables in VDJtools format, see [https://vdjtools-doc.readthedocs.io/en/master/input.html#vdjtools-format]. This control dataset can be used as a proxy for a generative VDJ rearrangement model to estimate the expected frequency distribution of TCRs and check for enrichment of rare TCR clonotypes and groups of similar TCR sequences. For the implementation of the enrichment analysis, please see CalcDegreeStats routine from VDJtools software, see [https://vdjtools-doc.readthedocs.io/en/master/annotate.html#calcdegreestats]. Files named "human.tra.strict.txt.gz", etc are pools of random/naive TCR clonotypes containing unique V/J/CDR3 nucleotide sequence combinations observed in data. The pools.zip file is used for TCR motif inference in VDJdb database [https://github.com/antigenomics/vdjdb-motifs], it contains human.tra.aa.txt, etc files that contain random/naive TCR clonotypes grouped by CDR3 amino acid sequence with the most frequent representative V and J.
DOI: 10.6084/m9.figshare.19327874
title: Takeda_et_al_data.csv

description: HR and HRVs recorded from interacting crows<br>
DOI: 10.6084/m9.figshare.19327874.v1
title: Takeda_et_al_data.csv

description: HR and HRVs recorded from interacting crows<br>
DOI: 10.5519/qd.k34aatn6
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (42 records)
DOI: 10.5519/qd.q0f4s2om
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (594 records)
DOI: 10.5281/zenodo.6339808
title: Nar/Nxr/Nap and Nos tree files from Columbia River hyporheic sediments

description: Nar/Nxr/Nap and Nos tree files from Columbia River hyporheic sediments pertaining to publication titled: <strong>Genome-resolved metaproteomics decodes the microbial and viral contributions to coupled carbon and nitrogen cycling in river sediments</strong>
DOI: 10.5281/zenodo.6339816
title: Raw measurement data for blowfly cephalopharyngeal skeleton length_Jamiaca

description: Raw dataset for result section (4 excel sheets containing measurements of blowfly larvae).
DOI: 10.5281/zenodo.6339815
title: Raw measurement data for blowfly cephalopharyngeal skeleton length_Jamiaca

description: Raw dataset for result section (4 excel sheets containing measurements of blowfly larvae).
DOI: 10.5517/ccdc.csd.cc295tcp
title: CCDC 2120752: Experimental Crystal Structure Determination

description: Related Article: Damian Antoniak, Michał Barbasiewicz|2021|CSD Communication|||
description: Related Article: Damian Antoniak, Micha Barbasiewicz|2022|Org.Lett.|24|516|doi:10.1021/acs.orglett.1c03920
DOI: 10.5517/ccdc.csd.cc295tdq
title: CCDC 2120753: Experimental Crystal Structure Determination

description: Related Article: Damian Antoniak, Michał Barbasiewicz|2021|CSD Communication|||
description: Related Article: Damian Antoniak, Micha Barbasiewicz|2022|Org.Lett.|24|516|doi:10.1021/acs.orglett.1c03920
DOI: 10.5517/ccdc.csd.cc295tfr
title: CCDC 2120754: Experimental Crystal Structure Determination

description: Related Article: Damian Antoniak, Michał Barbasiewicz|2021|CSD Communication|||
description: Related Article: Damian Antoniak, Micha Barbasiewicz|2022|Org.Lett.|24|516|doi:10.1021/acs.orglett.1c03920
DOI: 10.5517/ccdc.csd.cc295wv7
title: CCDC 2120829: Experimental Crystal Structure Determination

description: Related Article: Yue Ren|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc295yl1
title: CCDC 2120883: Experimental Crystal Structure Determination

description: Related Article: Arnaud Osi, Aurélien Chardon, Nikolay Tumanov, Johan Wouters, Guillaume Berionni|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc295zl2
title: CCDC 2120914: Experimental Crystal Structure Determination

description: Related Article: Jared P. Smit|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2961dz
title: CCDC 2120970: Experimental Crystal Structure Determination

description: Related Article: Catriona Thomson, Tze Cin Owyong, Jonathan M. White|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2966b2
title: CCDC 2121123: Experimental Crystal Structure Determination

description: Related Article: Billy Oktora Abdilah Fauzi|2021|CSD Communication|||