cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48610/1958974
title: Mass spectrometry raw data and ion library

description: This dataset consists of raw mass spectrometry files of EVs isolated using EXO-NET from human plasma.

Filter Aided Sample Preparation: For SWATH analysis, individual exosome samples were processed using the Filter Aided Sample Preparation (FASP) method [26]. A total of 15 µg of exosome protein from each sample was reduced with equal volume of lysis buffer containing 8% SDS, 100 mM Tris, pH 7.6 and 0.2 M DTT, followed sonication and heating of samples at 95°C, each. Samples were allowed to cool down completely before adding 8 M urea in 100 mM Tris, pH 8.5. Samples were transferred into a Nanosep® filter unit with a 30K molecular weight cut off and centrifuged for 10,000 g for 15 min. Then, filter units were washed with 400 µl of urea buffer and centrifuged for 10,000 g for 15 min. Samples were alkylated by addition of 100 µl of 50mM IAA in 8M urea buffer and incubated in the dark for 20 min. The filter units were washed with 8M urea buffer followed by of ABC. Proteins were digested using 0.3 µg of trypsin and incubated overnight at 37°C. 

Analysis of peptides: Tryptic digest was loaded onto a reversed phase trap column (CHROMXP C18CL 5um, 10 x 0.3mm; Eksigent, Redwood City) and on column wash was performed for 15 min (3 ul/min) followed by peptide separation on reversed phase CHROMXP C18CL 3 um, 120 A0, 150 x 0.075mm; (Eksigent, Redwood City) analytical column. LC gradient started with 95% mobile phase A (H2O/ 0.1% FA), 5% B (ACN/ 0.1% FA) at 0 min and increase to 10% B over for 2 min and then a 58-min linear gradient to 40% B followed by 50% B for 5 min. Mobile phase B was then increased from 50% to 95 % over 10 min followed by column wash at 95% B for 15 min and re-equilibrated with 5% Buffer B for 6 min. Flow rate was kept at 250 nl/min during entire LC run. The resulting peptide samples were processed in IDA on an AB Sciex 5600 TripleTOF mass spectrometer with the top 18 precursor ions automatically selected for fragmentation. The data obtained were combined to establish a peptide ion database. For SWATH acquisition, the TripleTOF® 5600 System was configured as described by Gillet at al. [27]. Using an isolation width of 26 Da (25 Da of optimal ion transmission efficiency and 1 Da for the window overlap), a set of 32 overlapping windows was constructed covering the mass range 400 to 1200 m/z.
DOI: 10.48610/1abe36d
title: Corrosion of BM in bile

description: Contains relevant info on the in vitro corrosion of biodegradable metals in a biliary environment
DOI: 10.48610/1ae3b01
title: Early within therapy naming probes as a clinically-feasible predictor of anomia treatment response

description: Thirty-four adults with chronic, post-stroke aphasia participated in the Aphasia Language Impairment and Functioning Treatment (Aphasia LIFT) program. Baseline information pertaining to participants demographics (age), stroke (time post onset), and language abilities (lexical-semantic processing) are included. Sets of 30 treated and untreated items were identified for each participant at baseline. Confrontation naming accuracy for treated and untreated items at baseline, within therapy, post-therapy and 1 month follow-up are included in this data set. Proportion of potential maximal gain for treated and untreated items at post-therapy and 1 month follow-up have been calculated.
DOI: 10.48610/1c00586
title: Isoflurane-mediated trapping of Syntaxin1a into nanoclusters in excitatory but not inhibitory synapses reveals a presynaptic mechanism of general anesthesia

description: Raw and processed data for manuscript "Isoflurane-mediated trapping of Syntaxin1a into nanoclusters in excitatory but not inhibitory synapses reveals a presynaptic mechanism of general anesthesia". Microscopy images, data analysis, and code. All work done in Drosophila Melanogaster fruit flies.
DOI: 10.48610/1c0170b
title: Townsville Citizen's Forum - deliberative 'mini public' - survey data

description: This dataset contains survey data from the Townsville citizens' forum, a deliberative mini-public process conducted in November-December 2018. This dataset contains the raw results of three surveys (pre-, mid- and post-deliberation) with citizen participants, and a summary data sheet.

Research team:
Dr Claudia Benham (Project Lead, The University of Queensland)
Dr Stephanie Duce (James Cook University)
Professor Simon Niemeyer (The University of Canberra)
Professor Kath Fisher (Southern Cross University)
Dr Annie Bauer-Civiello (James Cook University)
Dr Hannah Barrowman (The University of Canberra)
Professor Marcus Sheaves (James Cook University)
DOI: 10.15468/dl.azyrd5
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Craugastor rhyacobatrachus"
 ]
}

 The dataset includes 57 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001308-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48610/1c1164e
title: South East Queensland Koala Offset Analysis

description: Input data for the simulations analysis in the publication. Input data used in conjunction with: KoalaOffsets/OffsetAssessmentModel: Integrated Biodiversity Offset Assessment Model.
DOI: 10.48610/1c8d86a
title: INVITA Satellite data set

description: The dataset includes satellite imagery data collected from GRDC National Variety Trials (NVTs) for important grain crops conducted across multiple geographic locations and years in Australia. The dataset includes shapefiles which define trial boundaries, facilitating the analysis of crop performance at a trial level. The dataset includes imagery captured from PlanetScope, Airbus, Sentinel-2 and Landsat, Beijing-3 and TripleSat, which include bands in the visible, NIR and red-edge bands. 
The satellite imagery has a spatial resolution ranging from .3m2 per pixel to 30m2 depending on the sensor, allowing researchers to analyse crop performance at a trial, and sub-trial level. The number of measurements for each trial ranges from 2 to more than 10, enabling the analysis of within-season temporal trends. This dataset serves agricultural research and crop improvement purposes, enabling studies on crop variety performance, yield estimation, envirotyping, and GxExM interactions
DOI: 10.48610/1d6be63
title: Adaptation and Extrapolation

description: Raw data files, analysis scripts and experimental code for 'Predictive extrapolation effects can have a greater impact on visual decisions, while visual adaptation has a greater impact on conscious visual experience'
DOI: 10.5281/zenodo.18320845
title: Vicia selloi Vogel. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:56
DOI: 10.48610/1dcb974
title: CC-News-En

description: We describe a static, open-access news corpus using data from the Common Crawl Foundation, who provide free, publicly available web archives, including a continuous crawl of international news articles published in multiple languages. Our derived corpus, CC-News-En, contains 44 million English documents collected between September 2016 and March 2018. The dataset published here contains all crowdworker provided information, collected topics and queries, WARC data for the corresponding news documents, and other relevant data. The original paper describes the suite of data and processes used to collect it.
DOI: 10.48610/1e3afb5
title: Data associated with publication "Impacts of myrtle rust (Austropuccinia psidii) induced tree mortality on species and functional richness within seedling communities of a wet sclerophyll forest in Eastern Australia"

description: Data types include, raw data of botanical survey (indentity and abundance of seedlings), allocation of plant traits (dispersal mechanism, seed size, fruit size, fruit type) to seedlings, data representing transformation of raw data to species richness, Shannon's diversity index, richness of plant traits, and measures of disease impact (LAI, PC, PBA). Associated r code used for analysis.
DOI: 10.5281/zenodo.18320844
title: Vicia selloi Vogel. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:56
DOI: 10.48610/1e5c29d
title: Angolan Field Trip Data

description: Data and information collected by Jandira Morais during her filed trip to Angola from April to October 2022.
DOI: 10.48610/1e6bf9a
title: Quantifying error in effect size estimates in executive function and implicit learning

description: An accurate quantification of effect sizes for an experimental manipulation has the power
to motivate theory, and to reduce misinvestment in scientific resources by informing power
calculations during study planning. Such a quantification could theoretically be achieved
by a meta-analysis. However a combination of publication bias and small sample sizes
(~N = 25) hampers certainty that such an analysis would yield a non-erroneous estimate.
We sought to determine the extent to which each of these caveats may produce error in
effect size estimates for 4 commonly used paradigms assessing attention, executive function
and implicit learning (attentional blink (AB), multitasking (MT), contextual cueing (CC),
serial response task (SRT)). We combined a large dataset with a bootstrapping approach
to simulate 1000 experiments across a range of N (13-313). Beyond quantifying the effect
size and statistical power that can be anticipated for each study design, we demonstrate
that experiments with lower values of N lead to problematic information loss, potentially
biasing power calculations. Furthermore, we show that for the CC and SRT, a meta-analysis
of experiments with lower N is unlikely to ever converge on the true effect size, owing to
underspecification of the mapping between theory and statistical model. We conclude with
practical recommendations for researchers and demonstrate how our simulation approach can
yield theoretical insights that are not readily achieved by other methods; such as identifying
when qualitative individual differences exist in response to an experimental manipulation.
DOI: 10.48610/1e736d1
title: Blubber gene expression and cortisol concentrations reveal changing physiological stress in a Southern ocean sentinel species (Eastern Australian Humpback Whale)

description: Data collected from eastern Australian humpback whales during the 2020 and 2021 migratory period from Minjerribah (North Stradbroke Island). Includes validation and expermimental data contained in excel spreadsheets for steroid hormones, gene expression, and body condition data for publication in Marine Environmental Research. Also includes primer sequences used in gene expression data as .ab1, .bn, .fa, and, .seq filetypes. Additionally, High Resolution Melt results and target sequences are included.
DOI: 10.48610/1bfc10c
title: A robust Platform for Integrative Spatial Multi-omics Analysis to Map Immune Responses to SARS-CoV-2 infection in Lung Tissues

description: The SARS-CoV-2 (COVID-19) virus has caused a devastating global pandemic of respiratory illness. To understand viral pathogenesis, methods are available for studying dissociated cells in blood, nasal samples, bronchoalveolar lavage fluid, and similar, but a robust platform for deep tissue characterisation of molecular and cellular responses to virus infection in the lungs is still lacking. We developed an innovative spatial multi-omics platform to investigate COVID-19-infected lung tissues. Five tissue-profiling technologies were combined by a novel computational mapping methodology to comprehensively characterise and compare the transcriptome and targeted proteome of virus infected and uninfected tissues. By integrating spatial transcriptomics data (Visium, GeoMx and RNAScope) and proteomics data (CODEX and PhenoImager HT) at different cellular resolutions across lung tissues, we found strong evidence for macrophage infiltration and defined the broader microenvironment surrounding these cells. By comparing infected and uninfected samples, we found an increase in cytokine signalling and interferon responses at different sites in the lung and showed spatial heterogeneity in the expression level of these pathways. These data demonstrate that integrative spatial multi-omics platforms can be broadly applied to gain a deeper understanding of viral effects on cellular environments at the site of infection and to increase our understanding of the impact of SARS-CoV-2 on the lungs.
DOI: 10.48610/1f0377a
title: Effrenium voratum genomes and genes

description: This dataset contains the genome assemblies of three Effrenium voratum (NCBI:txid2562239) isolates (*.genome.fa): CCMP421, RCC1521, and rt-383, generated from a combination of short (Illumina) and long-read (PacBio, Nanopore, 10X Linked Read) sequencing technologies.

Also included are their predicted genes (in coding sequences, *CDS.fa) and corresponding predicted protein sequences (*proteins.fa) in two versions: with and without (*.no_iso.*) isoforms. The gene model annotations are in GFF3 format, with (*.genome.gff3) and without isoforms (*.genes.gff3). 

The organellar gene model annotations and scaffolds are also included. For more details, check the README.
DOI: 10.15468/dl.hntav7
title: Occurrence Download

description: A dataset containing 654 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((101.486 4.146163, 101.415554 4.140594, 101.346846 4.124022, 101.281569 4.096856, 101.221334 4.059767, 101.167624 4.01367, 101.121761 3.959699, 101.084876 3.899186, 101.057875 3.833622, 101.041419 3.764622, 101.035914 3.693886, 101.04149 3.623155, 101.058008 3.554171, 101.08506 3.488631, 101.121978 3.42815, 101.167851 3.374214, 101.221551 3.32815, 101.281754 3.291093, 101.34698 3.263952, 101.415625 3.247396, 101.486 3.241832, 101.556375 3.247396, 101.62502 3.263952, 101.690246 3.291093, 101.750449 3.32815, 101.804149 3.374214, 101.850022 3.42815, 101.88694 3.488631, 101.913992 3.554171, 101.93051 3.623155, 101.936086 3.693886, 101.930581 3.764622, 101.914125 3.833622, 101.887124 3.899186, 101.850239 3.959699, 101.804376 4.01367, 101.750666 4.059767, 101.690431 4.096856, 101.625154 4.124022, 101.556446 4.140594, 101.486 4.146163))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 654 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001309-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wwg3sk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((109.227 0.494185, 109.156734 0.488617, 109.088199 0.472053, 109.023082 0.444898, 108.962987 0.407823, 108.909393 0.361741, 108.86362 0.307785, 108.826795 0.247285, 108.799824 0.18173, 108.783371 0.112735, 108.777842 0.041999, 108.783372 -0.028738, 108.799826 -0.097733, 108.826797 -0.163287, 108.863622 -0.223787, 108.909396 -0.277742, 108.962989 -0.323824, 109.023084 -0.360899, 109.088201 -0.388053, 109.156735 -0.404617, 109.227 -0.410185, 109.297265 -0.404617, 109.365799 -0.388053, 109.430916 -0.360899, 109.491011 -0.323824, 109.544604 -0.277742, 109.590378 -0.223787, 109.627203 -0.163287, 109.654174 -0.097733, 109.670628 -0.028738, 109.676158 0.041999, 109.670629 0.112735, 109.654176 0.18173, 109.627205 0.247285, 109.59038 0.307785, 109.544607 0.361741, 109.491013 0.407823, 109.430918 0.444898, 109.365801 0.472053, 109.297266 0.488617, 109.227 0.494185))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001310-260120142942310/datasets/export for details.
DOI: 10.48610/204757f
title: Condensed data for: Neural prediction errors depend on how an expectation was formed

description: Contains:
- Experimental code
- Data sorting, preprocessing, and analysis scripts
- Condensed EEG data and all behavioural data

Full EEG data with original .bdf files uploaded seperately.
DOI: 10.5281/zenodo.18320854
title: Tillandsia capillaris f. cordobensis (Hieron.) L.B.Sm. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:55
DOI: 10.5281/zenodo.18320855
title: Tillandsia capillaris f. cordobensis (Hieron.) L.B.Sm. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:55
DOI: 10.48610/213f95d
title: Dataset for SCP Survey Paper published in the journal Computers & Security.

description: This dataset contains the literature review results, using the PRISMA flow diagram 2020 approach, for four research databases (ACM Library, IEEE Xplore, Criminal Justice Abstracts). The files in this dataset should be used in conjunction with Appendix A.1 of this Computers & Security paper: Situational Crime Prevention (SCP) Techniques to Prevent and Control Cybercrimes: A Focused Systematic Review (https://doi.org/10.1016/j.cose.2022.102611). Please see the readme.txt file in this dataset for more information.
DOI: 10.48610/221fbfe
title: Cold-acclimation completely compensates UV radiation-induced DNA damage rate in amphibian larvae (Limnodynastes peronii)

description: Exposure to UVR causes harmful DNA damage in amphibians, particularly at cold temperatures where DNA repair enzymes may not be as efficient. This project investigated whether amphibian larvae have the capacity to thermally acclimate to low temperatures, compensating for the depressive effects of temperature on UV tolerance.
DOI: 10.15468/q8cd63
title: Ethan Richard Wright Collection

description: The Ethan R. Wright Collection contains specimens primarily from Arizona.
DOI: 10.6084/m9.figshare.31101616
title: Dataset for A lightweight clear liquid optical chamber baited remote underwater video system for monitoring fish in turbid coastal wetlands

description: These are the datasets used to evaluate the performance of a light-weight clear liquid optical chamber baited remote underwater video system (CLOC-BRUV). The file "visibility.csv" shows how the underwater visibility increased with increasing length in the clear liquid chamber.The file "Catch.wide_CLOC_Net.csv" summarizes the fish family compositions observed from our CLOC-BRUV system, as well as caught in the netted fish traps. Both CLOC-BRUV and fish traps were deployed in a highly turbid water in the Sicao Wetland, western Taiwan from Jan to Dec in 2024 .
DOI: 10.6084/m9.figshare.31101616.v1
title: Dataset for A lightweight clear liquid optical chamber baited remote underwater video system for monitoring fish in turbid coastal wetlands

description: These are the datasets used to evaluate the performance of a light-weight clear liquid optical chamber baited remote underwater video system (CLOC-BRUV). The file "visibility.csv" shows how the underwater visibility increased with increasing length in the clear liquid chamber.The file "Catch.wide_CLOC_Net.csv" summarizes the fish family compositions observed from our CLOC-BRUV system, as well as caught in the netted fish traps. Both CLOC-BRUV and fish traps were deployed in a highly turbid water in the Sicao Wetland, western Taiwan from Jan to Dec in 2024 .
DOI: 10.48610/233461e
title: Drivers of global mangrove loss and gain

description: The data and R code used in the analysis of drivers and hotspots of global mangrove loss and gain.
DOI: 10.48610/237b89a
title: Queensland Coastal Data

description: This dataset is comprised of a collection of geomorphological and hydrodynamic data relevant to the eastern coast of Queensland over the 20th and 21st Centuries, used for the purpose of constructing a sediment budget model for the coast, by observing past change and investigating how this might affect the future of coastal processes in this region. The dataset contains a collection of georeferenced aerial photographs from 1930-2017 and digitised shorelines associated with each image, created from unreferenced photographs sourced from the Queensland Government (QImagery). Representative deep-water wave conditions and associated nearshore wave modelling results (from the model SWAN) are included, as well as estimates for wave-driven sediment transport potential along the eastern Queensland coast. Finally, volumetric estimates for morphological change of the shoreface under rising sea levels towards 2150 are also provided, based on a sediment budget model.
DOI: 10.48610/23fd2eb
title: TRS-BIOME

description: This dataset contains metagenomics data from stool samples collected from 97 adult (18-65) participants from Brisbane, Queensland, Australia collected between October 2020-November 2021. These participants were recruited across four groups: non-psychiatric controls, people with schizophrenia responding to first-line atypical antipsychotics, people with treatment-resistant schizophrenia responding to clozapine, and people with treatment-resistant schizophrenia not responding to clozapine. The data was used in Vasileva et al. 2024 (publshed in JAMA Psychiatry). This dataset contains the raw sequencing files (FASTQ), taxonomic and functional counts provided by Microba Inc, and metadata.
DOI: 10.5281/zenodo.18320860
title: Vernonia megapotamica Spreng. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:56
DOI: 10.5281/zenodo.18320861
title: Vernonia megapotamica Spreng. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:56
DOI: 10.48610/24401e1
title: HE001558-The role of social media opinion leaders in travel health communication

description: The data was collected for master thesis on the topic of The role of social media opinion leaders in travel health communication. The questions relates to travel health (perception and protection). Furthermore, there are questions about social media opinion leaders. It is quantitative data with five open-ended questions. 

The data was collected from 302 Chinese millennial travellers. Participants completed this survey online through Qualtrics. Importantly, there was a experiment component included in this survey. Participants were randomly assigned to one of for experiment conditions.