cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2kkk7y
title: CCDC 2370360: Experimental Crystal Structure Determination

description: Related Article: Mónica Benito, Ghodrat Mahmoudi, Elies Molins, Ennio Zangrando, Masoumeh Servati Gargari, Rosa M. Gomila, Antonio Frontera, Damir A. Safin|2025|CrystEngComm|27|164|doi:10.1039/D4CE01021C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l8h5k
title: CCDC 2391438: Experimental Crystal Structure Determination

description: Related Article: Manasi Mallick, Koustav Pal, Debabrata Das, Sourabh Biswas, Subrata Das, Devarajulu Sureshkumar|2024|J.Org.Chem.|89|18218|doi:10.1021/acs.joc.4c02076
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.65rrrd
title: Occurrence Download

description: A dataset containing 26448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Balaenoptera musculus (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 26448 records from 205 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073196-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.49rjw6
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "Geometry POLYGON((-80.89187 -5.53401,-74.78744 -5.53401,-74.78744 1.55999,-80.89187 1.55999,-80.89187 -5.53401))",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Ateles fusciceps fusciceps"
 ]
}

 The dataset includes 45 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073201-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2sas24
title: Occurrence Download

description: A dataset containing 1387 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "Geometry POLYGON((-78.86901 1.36149,-80.11231 0.80338,-80.39142 -0.51602,-80.77203 -0.89659,-80.94964 -2.29156,-80.08694 -3.53324,-80.36605 -4.19145,-79.22424 -4.74797,-78.74214 -4.46976,-78.15855 -3.38127,-75.84955 -1.96193,-75.26596 -0.9727,-75.39283 0.01682,-76.17941 0.34668,-77.09286 0.37205,-77.7272 0.90486,-78.86901 1.36149))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tapirus terrestris (Linnaeus, 1758)"
 ]
}

 The dataset includes 1387 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073202-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/f29s4bnp25.1
title: LINF_340019400

description: 3'-5' exonuclease; Leishmania infantum (strain JPCM5)
DOI: 10.17632/ms5hh8wyx7.1
title: LINF_330030200

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/sffw2sbdp8.1
title: Replication Data for "Migration and Resource Misallocation in China"

description: Replication package for "Migration and Resource Misallocation in China" published in the Journal of Development Economics, 2024, vol 167, 103218.

Refer to readme.html for instructions on how to replicate the results.
DOI: 10.17632/zws5pvcyzp.3
title: Tripartite transcription factor cooperativity anchors mSWI/SNF to poise the T cell effector landscape prior to antigen receptor expression. Gamble, Bradu, Caldwell et al. (2023)

description: Original Western Blot images from indicated figures in Gamble, Bradu, Caldwell et al. (2023) "Tripartite transcription factor cooperativity anchors mSWI/SNF to poise the T cell effector landscape prior to antigen receptor expression." File names indicate figure panel and target proteins.
DOI: 10.17632/gs44hgz895.2
title: Dynamically stiffening biomaterials reveal serum age and sex influence pulmonary arterial adventitial fibroblast activation in vitro

description: Respiratory diseases like pulmonary arterial hypertension (PAH) frequently exhibit sexual dimorphism. Female patients are more susceptible to, but have increased survival for, PAH, and the underlying mechanisms are not fully understood. This phenomenon is known as the estrogen paradox. Historic underrepresentation of female subjects in clinical trials, failure of many studies to identify the sex of animals in in vivo studies, and similar lack of information about tissue and cell sex in benchtop research have perpetuated a long-standing disparity in healthcare outcomes for female patients. During PAH progression in vivo, human pulmonary arterial adventitial fibroblasts (hPAAF) differentiate into an activated phenotype. These cells produce excess, aberrant extracellular matrix proteins that stiffen the surrounding pulmonary arterial tissues. Here, we employed dynamic poly(ethylene glycol)-alpha methacrylate (PEGαMA)-based biomaterials to study how the age and sex of human serum influenced hPAAF activation in response to microenvironmental stiffening in vitro. Results showed female and male cells responded differently to increases in microenvironmental stiffness and serum composition. Male hPAAFs were less activated than female cells on soft hydrogels and more responsive to increases in microenvironmental stiffness regardless of serum composition. Female hPAAF activation followed this same pattern only when cultured in younger (age &lt; 50) female serum or when older (age ≥ 50) female serum was supplemented with estradiol. Otherwise, female hPAAF activation was relatively high on both soft and stiffened hydrogels, with little difference in activation between the two conditions. Collectively, these results suggest that it may be possible to model the estrogen paradox observed in PAH in vitro and that it is critical for researchers to report cell sex and serum source when conducting in vitro experimentation.
DOI: 10.17632/52bp7k896v.1
title: Perillo et al. MiSMoS - PIV data set

description: 503 jpg files used to estimate current vectors in a cross-bar channels emplying PIV.
DOI: 10.17632/94kjxx4ddg.1
title: Reproducible data and software code for the study "Effect of different release strategies on movements and mortality in a restocked avian scavenger"

description: The following document contains information, about the 2 datasets that can be used to replicate data analysis of the study entitled “Effect of different release strategies on movements and mortality in a restocked avian scavenger”. The zipped folder contains two datasets, two scripts for replicating our analyses in R and one README file, with data specifications.
DOI: 10.17632/52bp7k896v.2
title: Perillo et al. MiSMoS - PIV data set

description: 503 jpg files used to estimate current vectors in a cross-bar channels emplying PIV.
DOI: 10.17632/p4kr3k86xz.1
title: LINF_180018400

description: acetyltransferase | NAT3; Leishmania infantum (strain JPCM5)
DOI: 10.17632/fthxkhpzp5.1
title: LDHU3_18.1710

description: Hook complex protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/jj5bcydj3w.1
title: Effects of feeding sulfate trace minerals above recommendations on nutrient digestibility, rumen fermentation, lactational performance, and trace mineral excretion in dairy cows

description: Most trace minerals (TM) are fed above dairy cow requirements in commercial herds but their fate and effects on dairy cows have not been well documented. In this study, we evaluated the effects of feeding short-term sulfate TM above recommendations on apparent total-tract digestibility of nutrients, rumen fermentation characteristics, serum concentrations, milk yield and composition as well as milk, fecal, and urinary TM excretion in mid-lactation dairy cows. Eight multiparous Holstein cows [average body weight: 684 (SD: 29) kg at 82 (SD: 10) days in milk] in a quadruple 2 × 2 cross-over design were fed a basal diet, differing in sulfate TM supplement concentrations, to provide either 0.11, 17, and 63 (control; CON) or 0.95, 114, and 123 (high trace minerals; HTM) mg of dietary Co, Mn, and Zn/kg of dry matter, respectively. Each experimental period had a 21-d adaptation to the diet, followed by a 10-d sample collection period. Feed ingredients and total feces and urine were collected during 4 consecutive d and rumen fluid was collected 0, 1, 2, 4, and 6 h relative to feeding. Milk yield was recorded daily and milk samples were collected on 4 consecutive milkings. Ingestion of Co, Mn, and Zn was higher for HTM compared to CON group by 216, 233, and 93%, respectively. Dry matter intake averaged 25.0 (SE = 0.6) kg/d, and apparent total-tract digestibility of major nutrients was similar between treatments. There was no measurable effect of HTM on ruminal pH, major volatile fatty acids, and protozoa counts. Isovalerate molar proportion was 9.4% greater for HTM compared to CON group. Neither milk yield (43.5 kg/d; SE = 0.8) nor milk fat and protein concentrations differed between treatments. Milk urea nitrogen concentration was significantly higher for HTM (11.7 mg/dL) compared to CON group (9.7 mg/dL; SE = 0.7). Fecal excretion of Co, Mn, and Zn increased by 223, 198, and 75%, respectively, for HTM compared to CON group. Urinary excretions of TM were marginal compared to feces, and only urinary Co and Mn were significantly higher for HTM than CON cows as similarly obtained for serum Co and Mn concentrations. Milk TM yields were not modified by treatments. In summary, short-term dietary sulfate TM supply over the recommendation did not improve cow performance but significantly increased fecal TM excretion, which could have impacts on TM accumulation in soils where manure is applied and could potentially result in leaching into nearby watersheds. Further studies are needed to evaluate the impact of high fecal TM excretion on the environment using the One Health approach. Moreover, the impacts of TM oversupply on milk production and cow health should be evaluated by long-term experiments.
DOI: 10.17632/hj9njz3rxp.1
title: Microstructural evolution of an Al-Ge alloy revealed by nano-CT

description: The dataset represents the microstructural evolution of an AlGe alloy due to heat treatment. It shows morphology changes and reveals grain coarsening and formation of precipitations.
DOI: 10.17632/646zpwbw5g.1
title: LINF_180020200

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/xxt96gs88k.2
title: Cutting simulation model for the article "Numerical chip formation analysis during high-pressure cooling in metal machining"

description: The used cutting simulation model is published in this database. After the simulation is terminated, the script Create_DataStruct.py can be executed to structure important output variables.
Related research article: Uhlmann E, Barth E, Bock-Marbach B, Kuhnert J. Numerical chip formation analysis during high-pressure cooling in metal machining. CIRP Journal of Manufacturing Science and Technology 2024;53:103–17. https://doi.org/10.1016/j.cirpj.2024.07.003.
DOI: 10.17632/ss2czfc4gj.1
title: The influence of solid surface hydrophobicity on stability of thin wetting films in solid-liquid-gas flotation system

description: This dataset contains the results of a study on the formation of a three-phase contact between a bubble and a flat glass surface with different hydrophobicity. 
The dataset includes the following: 
1) Values of static and dynamic (advancing and receding) water contact angles measured using the sessile drop technique on the surface of glass plates.
2) Values of three-phase contact formation time, bubble bouncing time and thin film drainage time.
3) Values of the three-phase contact diameter to bubble diameter ratio during adhesion to surfaces of different degrees of hydrophobicity.
4) Contact angle measured using the captive bubble method between the bubble and surface of the glass plate with different degrees of hydrophobicity.
5) The velocity of three-phase contact propagation during bubble adhesion to surfaces of different hydrophobicity.
DOI: 10.17632/533wdv54g2.1
title: LINF_190005000

description: Qb-SNARE protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/gg9jcftp62.1
title: SK_Mengajar Universitas Tadulako 2017

description: Melaksanakan TriDharma Perguruan Tinggi
DOI: 10.17632/rh3jw43hjs.1
title: A deep learning approach for automatic recognition of abnormalities in the cytoplasm of neutrophils - Dataset

description: This dataset contains digital images of neutrophils from peripheral blood smears used in the study titled "A deep learning approach for automatic recognition of abnormalities in the cytoplasm of neutrophils". The dataset includes 5605 images of neutrophils categorized into seven groups: Normal neutrophils (NEU), Hypogranulated neutrophils (HYP), neutrophils containing cryoglobulins (CRY), Döhle bodies (DB), Howell-Jolly body-like inclusions (HJBLI), green-blue inclusions of death (GBI), and phagocytosed bacteria (BAC). 

Note: This dataset is associated with the article "A deep learning approach for automatic recognition of abnormalities in the cytoplasm of neutrophils" by Kevin Barrera Llanga, José Rodellar, Santiago Alférez, and Anna Merino, published in Computers in Biology and Medicine. When using this data set, please cite the following article https://doi.org/10.1016/j.compbiomed.2024.108691
DOI: 10.17632/wkmcjfdyk5
title: LDHU3_19.1440

description: FCF1 | UTP24; Leishmania donovani (HU3 strain)
DOI: 10.17632/wkmcjfdyk5.1
title: LDHU3_19.1440

description: FCF1 | UTP24; Leishmania donovani (HU3 strain)
DOI: 10.17632/bnsjg4t8mh.1
title: Data associated with "Unexpected transformations during pyrroloiminoquinone biosynthesis" JACS 2024 146(20):14235.

description: Data associated with all figures in the main text and Supporting Information
DOI: 10.17632/t982bbh58m.1
title: LINF_190007200

description: GNL3L/Grn1-like GTPase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/b57wtpx78y.1
title: Profile Hidden Markov Model trained on UDP-diNAcBac PGT cluster, multiple sequence alignment and tree of 4,693 bacterial monotopic PGTs

description: File: smPGT_diNAcBac_hmm_102522.hmm
This is a Profile Hidden Markov Model which can be applied to monotopic bacterial phosphoglycosyl transferases to assign substrate specificity. 
This model was generated using HMMER 3.3 using a randomly selected half-set of PGTs which were found in the diNAcBac cluster of the attached tree. PGT sequences which score &gt; 200 using this model will likely utilize UDP-diNAcBac as their preferred substrate. 

File: sm_PGT_alignment_012323.fasta
This is a multiple sequence alignment of 4,693 bacterial monotopic PGTs. 

File: smPGT_tree_012323.newick
This is a tree generated in geneious prime of the above multiple sequence alignment.
DOI: 10.17632/h8jsf45skc.1
title: SiC-1SSF-MLFF

description: Trained MLFF to simulate 1SSFs in 4H-SiC. See "Machine-learning enhanced thermal stability investigation of single Shockley stacking faults in 4H-SiC" for details.
DOI: 10.17632/46jd3pwwt2.1
title: Historical organic matter sources and fire intensity in permafrost peatlands in northern Great Khingan Mountains (China) during the last millennium, and its effects on peatland carbon dynamic

description: Data For "Historical organic matter sources and fire intensity in permafrost peatlands in northern Great Khingan Mountains (China) during the last millennium, and its effects on peatland carbon dynamic". Including key peak ratios of organic matter and pyrogenic carbon FTIR spectrums, OM sources in HT and JT peatlands.
DOI: 10.17632/kj6pf8bfwg.1
title: LDHU3_06.0970

description: Hypothetical protein - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/pw4thmh9b8.1
title: LINF_190013000

description: Vps53-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/pzk2ym9vyd.1
title: LINF_190011300

description: ANF receptor domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/8g8dwpsmsn.1
title: Data associated with Proc Natl Acad Sci U S A. 2022 119(29):e2205285119. doi: 10.1073/pnas.2205285119.

description: Primary data associated with figures in main text and Supporting Information Appendix
DOI: 10.17632/dz9vmtdwws.1
title: Efficacy and safety of crisaborole ointment, 2%, in participants aged ≥45 years with stasis dermatitis

description: Supplementary Data
DOI: 10.17632/dh4c8bmsb3.1
title: LINF_190012100

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/93hz3pj4pg.1
title: LINF_270016200

description: Transcription factor IIIC subunit | Tau55; Leishmania infantum (strain JPCM5)
DOI: 10.17632/pz4r9r6wmt.1
title: Western Atlantic Corals Data

description: Presence/absence matrix of Western Atlantic zooxanthellate scleractinian coral species by ecoregion, based on occurrence records and species distribution models.
DOI: 10.17632/8wj967rj6d.1
title: LDHU3_15.1540

description: Nucleoside transporter 1 | NT1A; Leishmania donovani (HU3 strain)
DOI: 10.17632/kzcxchpdv9.1
title: LDHU3_15.1520

description: DnaJ domain-containing protein | JDP4 | J4; Leishmania donovani (HU3 strain)
DOI: 10.17632/4yysv3zf5v.1
title: Prcd KO manuscript source data

description: Progressive Rod-Cone Degeneration (PRCD) is an integral membrane protein found in photoreceptor outer segment (OS) disc membranes and its function remains unknown. Mutations in Prcd are implicated in Retinitis pigmentosa (RP) in humans and multiple dog breeds. PRCD-deficient models exhibit decreased levels of cholesterol in the plasma. However, potential changes in the retinal cholesterol remain unexplored. In addition, impaired phagocytosis observed in these animal models points to potential deficits in the retinal pigment epithelium (RPE). Here, using a Prcd-/- murine model we investigated the alterations in the retinal cholesterol levels and impairments in the structural and functional integrity of the RPE. Lipidomic and immunohistochemical analyses show a 5-fold increase in the levels of cholesteryl esters (C.Es) and lipid deposits in the PRCD-deficient retina, respectively, indicating alterations in total retinal cholesterol. Furthermore, the RPE of Prcd-/- mice exhibit a 1.7-fold increase in the expression of lipid transporter gene ATP-binding cassette transporter A1 (Abca1). Longitudinal fundus and spectral domain optical coherence tomography (SD-OCT) examinations showed focal lesions and RPE hyperreflectivity. Strikingly, the RPE of Prcd-/- mice exhibited age-related pathological features such as lipofuscin accumulation, Bruch’s membrane (BrM) deposits and drusenoid focal deposits, mirroring an Age-related Macular Degeneration (AMD)-like phenotype. We propose that the extensive lipofuscin accumulation likely impairs lysosomal function, leading to the defective phagocytosis observed in Prcd-/- mice. Our findings support the dysregulation of retinal cholesterol homeostasis in the absence of PRCD. Further, we demonstrate that progressive photoreceptor degeneration in Prcd-/- mice is accompanied by progressive structural and functional deficits in the RPE, which likely exacerbates vision loss over time.
DOI: 10.17632/xd4w4w92j7.1
title: Data associated with ACS Chem Biol 2022 17(9):2519-2527. doi: 10.1021/acschembio.2c00458

description: Data for figures in the main text and the Supporting Information
DOI: 10.17632/t8g6p9hyt2.1
title: Crystal Clear: Metal-Organic Frameworks Pioneering the Path to Future Drug Detox

description: The deposit contains data for the paper "Crystal Clear: Metal-Organic Frameworks Pioneering the Path to Future Drug Detox" including BET, DFT, in vivo, Raman, HPLC, XRD, UV-Vis and DFT-vibrational analyses.
DOI: 10.17632/z42pxrxsjr.1
title: Global Fast-Food Sentiment DB: Deep Learning Analysis of Twitter Feedback

description: The 'Global Fast-Food Sentiment DB: Deep Learning Analysis of Twitter Feedback' dataset comprises data collected from Twitter about three major fast-food restaurants - McDonald’s, Burger King, and KFC - which were listed among the top 25 most valuable restaurant brands by Brand Finance in 2022. The dataset includes English and Turkish tweets collected within a specific date range. Turkish tweets were translated into English to enhance classification accuracy. These brands were selected due to their high recognition both domestically and internationally. Online reviews about these brands were gathered from Twitter.

Tweets written in English and Turkish between September 9, 2022, and October 9, 2022, were collected, resulting in 145,551 English and 3,392 Turkish tweets. The data collection was conducted using the Python programming language, with the Snscrape library utilized for scraping tweets. To augment the number of Turkish tweets, additional data from June 8, 2022, onward were collected, totaling 12,391 Turkish tweets. The dataset also includes the location, date, and time information of the tweets.

The raw tweets underwent specific preprocessing steps. Polarity and subjectivity values were then derived using the TextBlob library. Based on polarity, the sentiment of the tweet content was classified as positive, negative, or neutral. The attributes of the created dataset include Text, Translated text (Only in the Turkish dataset), Cleaned text, Location, Date and time, Polarity value, Subjectivity value, Language, and Sentiment.

In the dataset composed of English tweets, McDonald’s is the most tweeted about brand with a total of 77,388 tweets. In contrast, in the dataset consisting of Turkish tweets, Burger King is the most mentioned brand with 2,334 tweets. The numbers of tweets gathered for each brand are as follows: For the English dataset, McDonald’s: 77,388 tweets, KFC: 24,904 tweets, and Burger King: 15,309 tweets; for the Turkish dataset, Burger King: 2,334 tweets, KFC: 1,831 tweets, and McDonald’s: 1,119 tweets. These numbers reflect the frequency of discussions surrounding each brand on social media, indicating a higher volume of English tweets for McDonald’s and a predominant Turkish conversation about Burger King within the context of our study.