cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2768pf
title: CCDC 2061614: Experimental Crystal Structure Determination

description: Related Article: Kaidi Xu, Zhi-Yuan Zhang, Zihao Zhou, Chunju Li|2022|Chin.Chem.Lett.|33|2451|doi:10.1016/j.cclet.2021.09.096
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/madtc5
title: Leuciacria butterfly specimens at Museum Zoologi Bogor, Indonesia

description: Dataset of Leuciacria butterfly specimens deposited at Museum Zoologi Bogor, Indonesia
DOI: 10.34740/kaggle/dsv/6198287
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.34740/kaggle/dsv/6198298
title: UNET Lung Segmentation Weights for Chest X Rays
DOI: 10.6084/m9.figshare.23767962
title: Theoretical molecular spectroscopy of actinide compounds: the ThO molecule

description: The tiny-core generalised (Gatchina) relativistic pseudopotential (GRPP) model provides an accurate approximation for many-electron Hamiltonians of molecules containing heavy atoms, ensuring a proper description of the effects of non-Coulombian electron-electron interactions, electronic self-energy and vacuum polarisation. Combining this model with electron correlation treatment in the frames of the intermediate Hamiltonian Fock space coupled cluster theory employing incomplete main model spaces, one obtains a reliable and economical tool for excited state modelling. The performance of this method is assessed in applications to <i>ab initio</i> modelling of excited electronic states of the thorium monoxide molecule with term energies below 20,000 cm−1. Radiative lifetimes of excited states are estimated using truncated expansions of effective and metric operators in powers of cluster amplitudes.
DOI: 10.6084/m9.figshare.22716736.v2
title: Spectroscopy of a mesospheric ghost

description: Dataset and python code to plot figures 3 and 4 in paper titled "Spectroscopy of a mesospheric ghost".
DOI: 10.5281/zenodo.8169811
title: Minimum dataset and R-script for analysis of inflammatory proteins associated with risk of Coronary Artery Disease in type 1 diabetes patients

description: Data for CAD manuscript
DOI: 10.6084/m9.figshare.22716736
title: Spectroscopy of a mesospheric ghost

description: Dataset for generating figures 3 and 4 in paper titled "Spectroscopy of a mesospheric ghost", and figure 1 in supplementary information of the same paper.
DOI: 10.5281/zenodo.8169810
title: Minimum dataset and R-script for analysis of inflammatory proteins associated with risk of Coronary Artery Disease in type 1 diabetes patients

description: Data for CAD manuscript
DOI: 10.6084/m9.figshare.23767191.v1
title: Supplementary data for "Low-Carbon Scheduling of Coupled Traffic-Power Networks With a Uniform Carbon Pricing Scheme"

description: Supplementary data for "Low-Carbon Scheduling of Coupled Traffic-Power Networks With a Uniform Carbon Pricing Scheme"
DOI: 10.6084/m9.figshare.23768064.v1
title: Supplementary Tables from Development and repair of blood vessels in the zebrafish spinal cord

description: Folder with 22 excel files with the datasets used in the figures and supplementary figures and an additional file with the corresponding legends for these tables.
DOI: 10.6084/m9.figshare.23768064
title: Supplementary Tables from Development and repair of blood vessels in the zebrafish spinal cord

description: Folder with 22 excel files with the datasets used in the figures and supplementary figures and an additional file with the corresponding legends for these tables.
DOI: 10.17034/6bbe9359-481b-47ba-8d0c-bf67d2c32e10
title: Initial conditions of N-body model of FCC 170 and secondary perturber

description: This dataset contains the initial conditions required to reproduce the results present in Chapter 2 and 3 of my PhD thesis along with papers Galán-de Anta P. M., et al., 2023, MNRAS, 520, 4490, and Galán-de Anta P. M., et al., 2023, MNRAS, 523, 3939. Each file presents the initial N-body model of FCC 170 (named 'FCC170_last_model_same_stellar_mass.hdf5') and the secondary perturber (named 'FCC170_1_to_4_highres_same_stellar_mass_compact.hdf5') in HDF5 format containing coordinates, velocities, masses and IDs of each particle. See the README file inside the dataset folder for further information.
DOI: 10.15468/kxxt7n
title: New or little known Sphecidae (Hymenoptera, Aculeata) from Sicily (Italy)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Tomarchio, S., G. F (2006): New or little known Sphecidae (Hymenoptera, Aculeata) from Sicily (Italy). Linzer biologische Beiträge 38 (1): 953-960, DOI: http://doi.org/10.5281/zenodo.5434594
DOI: 10.6084/m9.figshare.21593376
title: Raw data - Unique miRNome and Transcriptome Profiles Underlie Microvascular Heterogeneity in Mouse Kidney

description: Raw data of the manuscript "<em><strong>Unique miRNome and Transcriptome Profiles Underlie Microvascular Heterogeneity in the Mouse Kidney</strong></em>" as published in the <strong>American Journal of Physiology - Renal Physiology </strong>(https://doi.org/10.1152/ajprenal.00005.2023) <br> Types of included data are: - NDPI files showing immunohistochemistry or in situ hybridization in mouse kidney - Differential expression analysis data from both small RNA sequencing and RNA sequencing - Raw Cq values of all included RT-qPCRs
DOI: 10.6084/m9.figshare.21895842
title: Supplementary data - Unique miRNome and Transcriptome Profiles Underlie Microvascular Heterogeneity in Mouse Kidney

description: Supplementary data of the manuscript "<em><strong>Unique miRNome and Transcriptome Profiles Underlie Microvascular Heterogeneity in the Mouse Kidney</strong></em>" as published in the <strong>American Journal of Physiology - Renal Physiology </strong>(https://doi.org/10.1152/ajprenal.00005.2023) <br> Files included - Supplementary Figures S1-7 (.pptx) - Supplementary figure legends (.pdf) - Supplementary Table S1 (.xlsx) - Supplementary Table S2 (.xlsx) - Supplementary Table S3 (.xlsx) - Supplementary Table S4 (.xlsx) - Supplementary Table S5 (.xlsx) - Supplementary Table S6 (.xlsx)
DOI: 10.15468/z4s8we
title: Podismopsis styriaca nov. sp. (Orthoptera, Acridinae) ein Endemit im Ostalpenraum

description: This dataset contains the digitized treatments in Plazi based on the original journal article Koschuh, A. (2008): Podismopsis styriaca nov. sp. (Orthoptera, Acridinae) ein Endemit im Ostalpenraum. Linzer biologische Beiträge 40 (1): 627-638, DOI: http://doi.org/10.5281/zenodo.5429382
DOI: 10.5519/qd.iv89w6h5
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1040752 records)
DOI: 10.6084/m9.figshare.23768394
title: Table S3 from Spatial positioning of preimplantation mouse embryo cells is regulated by mTORC1 and m<sup>7</sup>G-cap-dependent translation at the 8- to 16-cell transition

description: Numbers of inner, outer and SAD blastomeres for embryos analysed in figure 2c. Microsoft Excel worksheet
DOI: 10.6084/m9.figshare.23768394.v1
title: Table S3 from Spatial positioning of preimplantation mouse embryo cells is regulated by mTORC1 and m<sup>7</sup>G-cap-dependent translation at the 8- to 16-cell transition

description: Numbers of inner, outer and SAD blastomeres for embryos analysed in figure 2c. Microsoft Excel worksheet
DOI: 10.6084/m9.figshare.23768397.v1
title: Table S5 from Spatial positioning of preimplantation mouse embryo cells is regulated by mTORC1 and m<sup>7</sup>G-cap-dependent translation at the 8- to 16-cell transition

description: List of significantly differently changing proteins between control and mTORi embryos at E2.5+8h and E2.5+9h. Microsoft Excel worksheet
DOI: 10.6084/m9.figshare.23768403
title: Table S4 from Spatial positioning of preimplantation mouse embryo cells is regulated by mTORC1 and m<sup>7</sup>G-cap-dependent translation at the 8- to 16-cell transition

description: Numbers of inner, outer and SAD blastomeres for embryos analysed in figure 4. Microsoft Excel worksheet
DOI: 10.6084/m9.figshare.23768397
title: Table S5 from Spatial positioning of preimplantation mouse embryo cells is regulated by mTORC1 and m<sup>7</sup>G-cap-dependent translation at the 8- to 16-cell transition

description: List of significantly differently changing proteins between control and mTORi embryos at E2.5+8h and E2.5+9h. Microsoft Excel worksheet
DOI: 10.6084/m9.figshare.23768400
title: Table S1 from Spatial positioning of preimplantation mouse embryo cells is regulated by mTORC1 and m<sup>7</sup>G-cap-dependent translation at the 8- to 16-cell transition

description: umbers of inner, outer and SAD blastomeres for embryos analysed in figure 2a. Microsoft Excel worksheet
DOI: 10.6084/m9.figshare.23768400.v1
title: Table S1 from Spatial positioning of preimplantation mouse embryo cells is regulated by mTORC1 and m<sup>7</sup>G-cap-dependent translation at the 8- to 16-cell transition

description: umbers of inner, outer and SAD blastomeres for embryos analysed in figure 2a. Microsoft Excel worksheet
DOI: 10.6084/m9.figshare.23768409.v1
title: Table S2 from Spatial positioning of preimplantation mouse embryo cells is regulated by mTORC1 and m<sup>7</sup>G-cap-dependent translation at the 8- to 16-cell transition

description: Numbers of inner, outer and SAD blastomeres for embryos analysed in figure 2b. Microsoft Excel worksheet
DOI: 10.6084/m9.figshare.23768403.v1
title: Table S4 from Spatial positioning of preimplantation mouse embryo cells is regulated by mTORC1 and m<sup>7</sup>G-cap-dependent translation at the 8- to 16-cell transition

description: Numbers of inner, outer and SAD blastomeres for embryos analysed in figure 4. Microsoft Excel worksheet
DOI: 10.6084/m9.figshare.23768409
title: Table S2 from Spatial positioning of preimplantation mouse embryo cells is regulated by mTORC1 and m<sup>7</sup>G-cap-dependent translation at the 8- to 16-cell transition

description: Numbers of inner, outer and SAD blastomeres for embryos analysed in figure 2b. Microsoft Excel worksheet
DOI: 10.17028/rd.lboro.23676696.v1
title: Supplementary information files for Environmental regulation, taxes, and activism

description: Supplementary files for article Environmental regulation, taxes, and activism Social activism is a burgeoning human response to pressing problems around the world, and nowhere is this response more apparent than in the ongoing global push back against environmental externalities. In this article, we explore—for the first time—whether there are degrees of activism that relate to degrees of regulatory stringency. Using data on environmental conflicts resulting from fossil fuel production across 68 countries over the period 1995–2014, we find that, for a given tax rate, a move from a lax to more stringent regime lowers the rate of environmental conflicts. These findings underscore the contingent role of policy stringency as a trigger for intense social movements.
DOI: 10.17028/rd.lboro.23676696
title: Supplementary information files for Environmental regulation, taxes, and activism

description: Supplementary files for article Environmental regulation, taxes, and activism Social activism is a burgeoning human response to pressing problems around the world, and nowhere is this response more apparent than in the ongoing global push back against environmental externalities. In this article, we explore—for the first time—whether there are degrees of activism that relate to degrees of regulatory stringency. Using data on environmental conflicts resulting from fossil fuel production across 68 countries over the period 1995–2014, we find that, for a given tax rate, a move from a lax to more stringent regime lowers the rate of environmental conflicts. These findings underscore the contingent role of policy stringency as a trigger for intense social movements.
DOI: 10.25919/zeb7-qn34
title: Hieracium 2016 genome browser data

description: Input data from a GBrowse and Sequence Server setup, representing Hieracium species genome and RNA sequencing assemblies and alignments. Data is from a study of apomixis, generated by the Asexual Seed Formation research team in CSIRO led by Anna Koltunow and originally published in 2016. Includes GFF files, FASTA files and BLAST database files. The data supported the publication : Generation of an integrated Hieracium genomic and transcriptome resource enables exploration of small RNA pathways during apomixis initiation David S. Rabiger, Jennifer M. Taylor, Andrew Spriggs, Melanie L. Hand, Steven T. Henderson, Susan D. Johnson, Karsten Oelkers1, Maria Hrmova, Keisuke Saito, Go Suzuki, Yasuhiko Mukai, Bernard J. Carroll and Anna M.G. Koltunow BMC Biology 2016
DOI: 10.5517/ccdc.csd.cc2gk18c
title: CCDC 2280492: Experimental Crystal Structure Determination

description: Related Article: Weihong Hou, Ruixue Xu, Yupei Sun|2022|U.S.Patents|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.23768829
title: Data repository

description: The conservation and management of large terrestrial carnivores is one of the most challenging tasks for researchers and practitioners seeking to foster human-wildlife coexistence. Agent-based models (ABMs) allow researchers to design a realistic simulation of their study system, including environmental, anthropogenic, and ecological agents and their characteristics to examine interactions at landscape scales and investigate how interventions may alter potential outcomes. Including high-resolution Geographic Information Systems (GIS) data and real-world ecological data streams in ABMs represents an innovative approach for site-specific investigations into how best to manage the return and re-establishment of large terrestrial carnivores. Here, we used GIS-integrated agent-based models to study the outcome of wolf reintroduction to Ireland’s national parks with respect to wolf ecology and wolf-livestock interactions. We introduced pragmatic management strategies and policy interventions to assess how wolf-livestock interactions could be influenced by wildlife managers and whether outcomes were site-specific. Our study found that wolves could persist past the initial introduction in each protected area regardless of which reintroduction strategy is utilised, however, human-wildlife conflict warning signs always emerge. For example, wolves extensively disperse outside of protected areas, den-sites are located very close (c. 1.5km) to park boundaries and livestock-depredations do occur. Management and policy interventions significantly reduced the likelihood of human-wildlife conflict by reducing the number of livestock depredations and creating ecological buffers that reduce wolf-human interactions, however, the individual characteristics of the protected area determined the success of each management and policy intervention. This analysis reveals nuanced differences in the response of each unique study area to the same management and policy interventions, demonstrating that the outcome of management and policy interventions is highly dependent on the specific ecological conditions captured in the simulation using GIS data. This underscores the importance of integrating high-resolution GIS data into ecological ABMs and highlights the power that such integration can bring to these models for delivering tailored management and policy recommendations to decision-makers enabling human-wildlife coexistence with large carnivores in complex landscapes.
DOI: 10.6084/m9.figshare.23768829.v1
title: Data repository

description: The conservation and management of large terrestrial carnivores is one of the most challenging tasks for researchers and practitioners seeking to foster human-wildlife coexistence. Agent-based models (ABMs) allow researchers to design a realistic simulation of their study system, including environmental, anthropogenic, and ecological agents and their characteristics to examine interactions at landscape scales and investigate how interventions may alter potential outcomes. Including high-resolution Geographic Information Systems (GIS) data and real-world ecological data streams in ABMs represents an innovative approach for site-specific investigations into how best to manage the return and re-establishment of large terrestrial carnivores. Here, we used GIS-integrated agent-based models to study the outcome of wolf reintroduction to Ireland’s national parks with respect to wolf ecology and wolf-livestock interactions. We introduced pragmatic management strategies and policy interventions to assess how wolf-livestock interactions could be influenced by wildlife managers and whether outcomes were site-specific. Our study found that wolves could persist past the initial introduction in each protected area regardless of which reintroduction strategy is utilised, however, human-wildlife conflict warning signs always emerge. For example, wolves extensively disperse outside of protected areas, den-sites are located very close (c. 1.5km) to park boundaries and livestock-depredations do occur. Management and policy interventions significantly reduced the likelihood of human-wildlife conflict by reducing the number of livestock depredations and creating ecological buffers that reduce wolf-human interactions, however, the individual characteristics of the protected area determined the success of each management and policy intervention. This analysis reveals nuanced differences in the response of each unique study area to the same management and policy interventions, demonstrating that the outcome of management and policy interventions is highly dependent on the specific ecological conditions captured in the simulation using GIS data. This underscores the importance of integrating high-resolution GIS data into ecological ABMs and highlights the power that such integration can bring to these models for delivering tailored management and policy recommendations to decision-makers enabling human-wildlife coexistence with large carnivores in complex landscapes.
DOI: 10.4121/6affb4a6-2893-41e8-bdf8-d276247d7d19.v1
title: Oxford Nanopore long-read genome sequencing of mutants in Streptococcus suis strain P1/7 constructed using pSStarget, a novel plasmid-based CRISPR/Cas9 genome editing system

description: <strong>Description:</strong>This dataset contains ONT sequencing reads of the wild type strain <em>S. suis</em> P1/7 and four derived mutant strains constructed using a novel CRISPR-Cas9 genome editing system for S. suis. Our data shows that our laboratory stock of strain P1/7 has 2 SNPs and a 5 bp deletion relative to the reference sequence (AM946016.1) published in GenBank. We confirm that the precise deletion of the <em>cpsEF </em>and s<em>ly</em> genes in the respective mutants as well as in the double knockout mutant. Moreover, we confirm the precise introduction of targeted mutations resulting in a single amino acid change in the Enolase gene product. No other mutations or structural variations have been detected. <strong>This dataset contains the following 5 files:</strong>WT_raw_reads.fastq.gz dCps_raw_reads.fastq.gz dSly_raw_reads.fastq.gz dCps_dSly_raw_reads.fastq.gz enoK261A_raw_reads.fastq.gz <strong>Explanation of variables:</strong>All files contain raw ONT reads in the FASTQ (.fq) format in zipped (.gz) format.WT refers to the wild type strain Streptococcus suis P1/7. The prefix dCps and dSly refers to a knockout strain with the <em>cpsE/cpsF</em> and <em>sly</em> genes deleted, respectively. The double knockout mutant, in which both loci were deleted, is denoted with the prefix dCps_dSly. Finally, prefix enoK261A denotes the strain with a single amino acid mutation in the essential <em>eno</em> gene.<br><strong>Materials and methods:</strong>All strains were grown in Todd-Hewitt broth (Oxoid) supplemented with 0.2% Bacto™ yeast extract (BD Biosciences) (THY) without agitation. Overnight cultures (10ml) were harvested by centrifugation at 4500x for 10min and the pellets were transferred to bead beating tubes tube containing 0.1mm silica beads (Lysing matrix B, MP Biomedicals) and lysed by bead beating for 40 seconds at 4.0 m/s using a FastPrep-24 5G (MP Biomedicals). The lysates were cleared by centrifugation at 16.000x for 10 minutes and the genomic DNA (gDNA) has been isolated using the PowerSoil DNA Isolation Kit (Qiagen) according to manufacturer’s instructions. The concentration, purity and integrity of the extracted gDNA were determined using the Qubit BR DNA assay, DeNovix spectrophotometer and gel electrophoresis, respectively. The concentrations were normalized to 50ng/μl and sent to Plasmidsaurus (https://www.plasmidsaurus.com/) for further processing. Briefly, genomic DNA was minimally fragmented, amplification-free libraries were constructed from the fragmented DNA using the v14 library prep chemistry and the libraries were sequenced using R10.4.1 flow cells. The raw reads have been delivered in FASTQ format.<br><strong>License</strong>This dataset is published under the CC BY-SA (Attribution ShareAlike) license.<br>
DOI: 10.6084/m9.figshare.23769067.v1
title: Example MCell Scripts for Simulating CCV and ETV Models from Sheet and void porous media models for brain interstitial space

description: Shows use of model description language (mdl) used to make Monte Carlo simulations.
DOI: 10.6084/m9.figshare.23769067
title: Example MCell Scripts for Simulating CCV and ETV Models from Sheet and void porous media models for brain interstitial space

description: Shows use of model description language (mdl) used to make Monte Carlo simulations.
DOI: 10.6084/m9.figshare.23769160
title: Supplementary Material from Biosynthesized silver nanoparticles for electrochemical detection of Bromocresol green in river water

description: In this study, silver nanoparticles (AgNPs)-based electrochemical sensor has been reported for assessing bromocresol green (BG) in river water. Firstly, AgNPs were greenly produced using the aqueous extract of <i>Ficus sycomorus</i> leaves. Then, the AgNP-modified glassy carbon (GC) electrode was prepared using the sticking method. AgNPs were characterized using transmission electron microscope (TEM), X-ray diffraction (XRD), square wave voltammetry (SWV) and scanning electron microscope (SEM). TEM and SEM were used for determining the size of AgNPs before and after adsorption, respectively. The results show that there was an increase in AgNP size from 20 to 30 nm. Additionally, XRD was used for characterizing the crystal nature of AgNPs, while SWV exhibited a characteristic oxidation peak of AgNPs at 0.06 V. Moreover, cyclic voltammetry (CV) and electrochemical impedance spectroscopy (EIS) were used for characterizing the catalytic effect of AgNPs. BG as a targeted pollutant was detected at AgNPs/GC based on its oxidation through proton and electron transfer. Two peaks corresponding to the monomer and polymer oxidation were detected. The monomer- and polymer-based sensors have revealed a linear range of 2.9 × 10<sup>−5</sup> to 2.1 × 10<sup>−4</sup> mole l and low detection limits (LODs) of 1.5 × 10<sup>−5</sup> and 1.3 × 10<sup>−5</sup> mole l, respectively.