cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4233119.v2
title: A MANY-OBJECTIVE OPTIMIZATION AND VISUAL ANALYTICS APPROACH TO PROJECT SELECTION FOR INTEGRATED CATCHMENT MANAGEMENT

description: · Data Set S1. An excel spreadsheet containing stormwater harvesting and green score determined by stakeholders, and calculations for costings and water quality performance of individual BMPs. Filename: ds01.xlsx · Data Set S2.<b> </b>A compressed file containing inputs and an executable for the Pareto Ant Colony Optimization Algorithm (PACOA) that can be run on a Windows desktop computer to replicate the optimization results. Filename: ds02.rar · Data Set S3. An excel spreadsheet containing the objective function values, decision options, and alternative data (catchment size, breakdown of benefits by Council) of the Pareto optimal solutions determined by sorting the optimization results for non-dominance in objective space. Filename: ds03.csv · Data Set S4. A .ddv that can be opened in the DiscoveryDV visual analytics program, containing interactive visualization of the Pareto optimal solution data from Data Set S3. Filename: ds04.ddv <br>
DOI: 10.6084/m9.figshare.4233119.v1
title: A MANY-OBJECTIVE OPTIMIZATION AND VISUAL ANALYTICS APPROACH TO PROJECT SELECTION FOR INTEGRATED CATCHMENT MANAGEMENT

description: · Data Set S1. An excel spreadsheet containing stormwater harvesting and green score determined by stakeholders, and calculations for costings and water quality performance of individual BMPs. Filename: ds01.xlsx · Data Set S2.<b> </b>A compressed file containing inputs and an executable for the Pareto Ant Colony Optimization Algorithm (PACOA) that can be run on a Windows desktop computer to replicate the optimization results. Filename: ds02.rar · Data Set S3. An excel spreadsheet containing the objective function values, decision options, and alternative data (catchment size, breakdown of benefits by Council) of the Pareto optimal solutions determined by sorting the optimization results for non-dominance in objective space. Filename: ds03.csv · Data Set S4. A .ddv that can be opened in the DiscoveryDV visual analytics program, containing interactive visualization of the Pareto optimal solution data from Data Set S3. Filename: ds04.ddv <br>
DOI: 10.6084/m9.figshare.4233110
title: ttt.png

description: Two favourable computed structures of <i>N</i>-methylacetamide (NMA) trimer which have been overlooked in previous studies, because they are stabilized by London dispersion interactions in addition to NH...O=C hydrogen bonding. Structure optimization and harmonic spectra at B3LYP-D3(BJ)/aug-cc-pVTZ level confirm that these or similar structures are present in a supersonic jet expansion of NMA in helium which is probed by linear Raman spectroscopy, together with dimers and larger clusters.<br><br>The calculations were carried out with Gaussian09 E.01, the visualization with Gaussview 5.0.9, the figure was produced with Microsoft Powerpoint 2013.<br><br>The publication describing these calculations together with the experimental data is currently being prepared. <br>
DOI: 10.6084/m9.figshare.4233110.v1
title: ttt.png

description: Two favourable computed structures of <i>N</i>-methylacetamide (NMA) trimer which have been overlooked in previous studies, because they are stabilized by London dispersion interactions in addition to NH...O=C hydrogen bonding. Structure optimization and harmonic spectra at B3LYP-D3(BJ)/aug-cc-pVTZ level confirm that these or similar structures are present in a supersonic jet expansion of NMA in helium which is probed by linear Raman spectroscopy, together with dimers and larger clusters.<br><br>The calculations were carried out with Gaussian09 E.01, the visualization with Gaussview 5.0.9, the figure was produced with Microsoft Powerpoint 2013.<br><br>The publication describing these calculations together with the experimental data is currently being prepared. <br>
DOI: 10.6084/m9.figshare.4233047
title: Productivity dominated by picoplankton in a macro-tidal tropical estuary, Darwin Harbour

description: Productivity around the tropical coast of North Australia has been considered to be dominated by phytoplankton. The phytoplankton encompasses a large taxon which, dependent on the source definition, can vary significantly. Traditionally, they would only include pelagic photosynthetic organisms (autotrophic), yet more recently the definition is being revised to include heterotrophic organisms. Recent advancements in oceanography over the past three decades have found the prevalence in the global ocean of cyanobacteria of sizes ranging from 0.5–1.5 µm. Two cyanobacterial genera <i>Synechoccocus</i> and <i>Prochlorococcus</i> are now recognised to dominate phytoplankton cell counts and biomass specifically in the oligotrophic tropical and subtropical oceans. This study is the first to identify the importance of picoplankton as a foremost contributor to productivity in a macro-tidal ecosystem in Northern Tropical Australia. Picoplankton was found to be the dominant group of primary producers (&gt; 99% or 6 × 10<sup>9</sup> cells/L) within the phytoplankton in Darwin Harbour during the dry season of 2013. The larger phytoplankton &gt; 2 µm contributed (&lt; 0.05% or 2 × 10<sup>2</sup> cells/L) of the population. This study further defines the influences on this dynamic system that would allow the picoplankton community to thrive, highlighting the complexity of this nitrogen-limited system, where nutrient cycling, including nitrogen fixation mediated possibly through the microbial community, plays a pertinent role. Other environmental influences include spring tides, spatial variation and increased turbidity which benefits heterotrophy over autotrophy in this ecosystem.
DOI: 10.6084/m9.figshare.4233047.v1
title: Productivity dominated by picoplankton in a macro-tidal tropical estuary, Darwin Harbour

description: Productivity around the tropical coast of North Australia has been considered to be dominated by phytoplankton. The phytoplankton encompasses a large taxon which, dependent on the source definition, can vary significantly. Traditionally, they would only include pelagic photosynthetic organisms (autotrophic), yet more recently the definition is being revised to include heterotrophic organisms. Recent advancements in oceanography over the past three decades have found the prevalence in the global ocean of cyanobacteria of sizes ranging from 0.5–1.5 µm. Two cyanobacterial genera <i>Synechoccocus</i> and <i>Prochlorococcus</i> are now recognised to dominate phytoplankton cell counts and biomass specifically in the oligotrophic tropical and subtropical oceans. This study is the first to identify the importance of picoplankton as a foremost contributor to productivity in a macro-tidal ecosystem in Northern Tropical Australia. Picoplankton was found to be the dominant group of primary producers (&gt; 99% or 6 × 10<sup>9</sup> cells/L) within the phytoplankton in Darwin Harbour during the dry season of 2013. The larger phytoplankton &gt; 2 µm contributed (&lt; 0.05% or 2 × 10<sup>2</sup> cells/L) of the population. This study further defines the influences on this dynamic system that would allow the picoplankton community to thrive, highlighting the complexity of this nitrogen-limited system, where nutrient cycling, including nitrogen fixation mediated possibly through the microbial community, plays a pertinent role. Other environmental influences include spring tides, spatial variation and increased turbidity which benefits heterotrophy over autotrophy in this ecosystem.
DOI: 10.6084/m9.figshare.4233044
title: Menyusun Kotak - Fathia Frazna Az-Zahra

description: Game ini merupakan sebuah aplikasi pembelajaran matematika dalam bentuk permainan khusus untuk materi Pola kelas IX SMP. <br>Game ini dinamakan POLA(R) karena game ini membahas tentang bagaimana membuat suatu urutan pola yang benar. <br>Sedangkan kata (R) dibelakang kata pola yang jika disatukan menjadi POLA(R) – bahasa inggris – yang jika diartikan dalam bahasa Indonesia memiliki arti beruang kutub yang hidup di daerah dingin yang bersalju. Oleh karena itu saya gunakan tema salju, biru tua dengan biru muda untuk game POLA(R) ini.
DOI: 10.6084/m9.figshare.4233044.v1
title: Menyusun Kotak - Fathia Frazna Az-Zahra

description: Game ini merupakan sebuah aplikasi pembelajaran matematika dalam bentuk permainan khusus untuk materi Pola kelas IX SMP. <br>Game ini dinamakan POLA(R) karena game ini membahas tentang bagaimana membuat suatu urutan pola yang benar. <br>Sedangkan kata (R) dibelakang kata pola yang jika disatukan menjadi POLA(R) – bahasa inggris – yang jika diartikan dalam bahasa Indonesia memiliki arti beruang kutub yang hidup di daerah dingin yang bersalju. Oleh karena itu saya gunakan tema salju, biru tua dengan biru muda untuk game POLA(R) ini.
DOI: 10.6084/m9.figshare.4233029
title: Dataset for: Longitudinal Beta-Binomial Modeling using GEE for Over-Dispersed Binomial Data

description: Longitudinal binomial data are frequently generated from multiple questionnaires and assessments in various scientific settings for which the binomial data are often over-dispersed. The standard generalized linear mixed effects model (GLMM) may result in severe underestimation of standard errors of estimated regression parameters in such cases and hence potentially bias the statistical inference. In this paper, we propose a longitudinal beta-binomial model for over-dispersed binomial data and estimate the regression parameters under a probit model using the Generalized Estimating Equation (GEE) method. A hybrid algorithm of the Fisher Scoring and the Method of Moments is implemented for computing the method. Extensive simulation studies are conducted to justify the validity of the proposed method. Finally the proposed method is applied to analyze functional impairment in subjects who are at-risk of Huntington disease (HD) from a multi-site observational study of prodromal HD.
DOI: 10.6084/m9.figshare.4233029.v1
title: Dataset for: Longitudinal Beta-Binomial Modeling using GEE for Over-Dispersed Binomial Data

description: Longitudinal binomial data are frequently generated from multiple questionnaires and assessments in various scientific settings for which the binomial data are often over-dispersed. The standard generalized linear mixed effects model (GLMM) may result in severe underestimation of standard errors of estimated regression parameters in such cases and hence potentially bias the statistical inference. In this paper, we propose a longitudinal beta-binomial model for over-dispersed binomial data and estimate the regression parameters under a probit model using the Generalized Estimating Equation (GEE) method. A hybrid algorithm of the Fisher Scoring and the Method of Moments is implemented for computing the method. Extensive simulation studies are conducted to justify the validity of the proposed method. Finally the proposed method is applied to analyze functional impairment in subjects who are at-risk of Huntington disease (HD) from a multi-site observational study of prodromal HD.
DOI: 10.6084/m9.figshare.4233011.v2
title: Supplementary Information for Genomic and Chemical Diversity in Cannabis

description: Supplementary Information for Genomic and Chemical Diversity in <i>Cannabis</i>, Figures S1 - S5 and Table S1.
DOI: 10.6084/m9.figshare.4232966
title: material suplementar PLOS ONE.docx

description: Supporting Information
DOI: 10.6084/m9.figshare.4232933
title: Excel raw Dataset to charaterize ultrasound Perfusion measurement

description: Recent dataset comprising clinical and US data
DOI: 10.6084/m9.figshare.4232966.v1
title: material suplementar PLOS ONE.docx

description: Supporting Information
DOI: 10.6084/m9.figshare.4232933.v1
title: Excel Dataset

description: Recent dataset comprising clinical and US data
DOI: 10.6084/m9.figshare.4232834
title: Plos One Oxyspirura data manuscript.xls

description: <i>Oxyspirura petrowi</i> is a parasitic nematode that infects wild birds. This parasite has a broad host range, but has recently been reported in high prevalences from native Galliformes species in the United States. In order to better understand the impact <i>O. petrowi</i> has on wild bird populations, we developed a quantitative PCR protocol to detect infections in wild northern bobwhites (<i>Colinus virginianus</i>). We used paired fecal and cloacal swab samples from wild caught and experimentally infected northern bobwhites and matching fecal float data from experimentally infected birds to validate our assay. Overall we detected more positive birds from fecal samples than the paired cloacal swabs and there was strong agreement between the qPCR results from fecal samples and from fecal flotation (84%; κ=0.69 [0.53-0.84 95% CI]). We also detected <i>O. petrowi</i> DNA in ten replicates of samples spiked with one <i>O. petrowi </i>egg. This qPCR assay is an effective assay to detect <i>O. petrowi</i> infections in wild birds. Our results suggest that fecal samples are the most appropriate sample for detecting infections; although, cloacal swabs can be useful for determining if <i>O. petrowi</i> is circulating in a population.
DOI: 10.6084/m9.figshare.4232858
title: Rawdata_Kampermann_et_al.xls

description: Online survey conducted among 87 primary care physicians. The survey assessed the physician’s beliefs in antidepressant effectiveness, as well as 6 explanatory models regarding antidepressant effectiveness and 8 explanatory models for the occurrence of side effects.
DOI: 10.6084/m9.figshare.4232834.v1
title: Plos One Oxyspirura data manuscript.xls

description: <i>Oxyspirura petrowi</i> is a parasitic nematode that infects wild birds. This parasite has a broad host range, but has recently been reported in high prevalences from native Galliformes species in the United States. In order to better understand the impact <i>O. petrowi</i> has on wild bird populations, we developed a quantitative PCR protocol to detect infections in wild northern bobwhites (<i>Colinus virginianus</i>). We used paired fecal and cloacal swab samples from wild caught and experimentally infected northern bobwhites and matching fecal float data from experimentally infected birds to validate our assay. Overall we detected more positive birds from fecal samples than the paired cloacal swabs and there was strong agreement between the qPCR results from fecal samples and from fecal flotation (84%; κ=0.69 [0.53-0.84 95% CI]). We also detected <i>O. petrowi</i> DNA in ten replicates of samples spiked with one <i>O. petrowi </i>egg. This qPCR assay is an effective assay to detect <i>O. petrowi</i> infections in wild birds. Our results suggest that fecal samples are the most appropriate sample for detecting infections; although, cloacal swabs can be useful for determining if <i>O. petrowi</i> is circulating in a population.
DOI: 10.6084/m9.figshare.4232858.v1
title: Rawdata_Kampermann_et_al.xls

description: Online survey conducted among 87 primary care physicians. The survey assessed the physician’s beliefs in antidepressant effectiveness, as well as 6 explanatory models regarding antidepressant effectiveness and 8 explanatory models for the occurrence of side effects.
DOI: 10.6084/m9.figshare.4232780
title: LBM_SmkTBdata_14Nov2016.dta

description: <b>Tobacco smoking and tuberculosis among men living with HIV in Johannesburg, South Africa: A case-control study.</b> <b> </b>
DOI: 10.6084/m9.figshare.4232780.v1
title: LBM_SmkTBdata_14Nov2016.dta

description: <b>Tobacco smoking and tuberculosis among men living with HIV in Johannesburg, South Africa: A case-control study.</b> <b> </b>
DOI: 10.6084/m9.figshare.4232717
title: Processing of single-photon responses in the mammalian On and Off retinal pathways at the sensitivity limit of vision

description: Visually guided behaviour at its sensitivity limit relies on single-photon responses originating in a small number of rod photoreceptors. For decades, researchers have debated the neural mechanisms and noise sources that underlie this striking sensitivity. To address this question, we need to understand the constraints arising from the retinal output signals provided by distinct retinal ganglion cell types. It has recently been shown in the primate retina that On and Off parasol ganglion cells, the cell types likely to underlie light detection at the absolute visual threshold, differ fundamentally not only in response polarity, but also in the way they handle single-photon responses originating in rods. The On pathway provides the brain with a thresholded, low-noise readout, and the Off pathway with a noisy, linear readout. We outline the mechanistic basis of these different coding strategies and analyse their implications for detecting the weakest light signals. We show that high-fidelity, nonlinear signal processing in the On pathway comes with costs: more single-photon responses are lost and their propagation is delayed compared to the Off pathway. On the other hand, the responses of On ganglion cells allow better intensity discrimination compared to the Off ganglion cell responses near visual threshold.
DOI: 10.6084/m9.figshare.4232711
title: allConsensus.fasta

description: Data from zika virus analysis<br>
DOI: 10.6084/m9.figshare.4232711.v1
title: allConsensus.fasta

description: Data from zika virus analysis<br>
DOI: 10.6084/m9.figshare.4232708
title: Supplemental Figure 1

description: Data from zika virus analysis<br>
DOI: 10.6084/m9.figshare.4232717.v1
title: Data set

description: test
DOI: 10.6084/m9.figshare.4232708.v1
title: Supplemental Figure 1

description: Data from zika virus analysis<br>
DOI: 10.6084/m9.figshare.4232717.v2
title: Processing of single-photon responses in the mammalian On and Off retinal pathways at the sensitivity limit of vision

description: Visually guided behaviour at its sensitivity limit relies on single-photon responses originating in a small number of rod photoreceptors. For decades, researchers have debated the neural mechanisms and noise sources that underlie this striking sensitivity. To address this question, we need to understand the constraints arising from the retinal output signals provided by distinct retinal ganglion cell types. It has recently been shown in the primate retina that On and Off parasol ganglion cells, the cell types likely to underlie light detection at the absolute visual threshold, differ fundamentally not only in response polarity, but also in the way they handle single-photon responses originating in rods. The On pathway provides the brain with a thresholded, low-noise readout, and the Off pathway with a noisy, linear readout. We outline the mechanistic basis of these different coding strategies and analyse their implications for detecting the weakest light signals. We show that high-fidelity, nonlinear signal processing in the On pathway comes with costs: more single-photon responses are lost and their propagation is delayed compared to the Off pathway. On the other hand, the responses of On ganglion cells allow better intensity discrimination compared to the Off ganglion cell responses near visual threshold.
DOI: 10.6084/m9.figshare.4232702
title: SupplTable4_v1.5.xlsx

description: Data from zika virus analysis<br>
DOI: 10.6084/m9.figshare.4232702.v1
title: SupplTable4_v1.5.xlsx

description: Data from zika virus analysis<br>
DOI: 10.6084/m9.figshare.4232699
title: SupplTable3_v1.5.xlsx

description: Data from zika virus analysis<br>
DOI: 10.6084/m9.figshare.4232717.v3
title: Processing of single-photon responses in the mammalian On and Off retinal pathways at the sensitivity limit of vision

description: Visually guided behaviour at its sensitivity limit relies on single-photon responses originating in a small number of rod photoreceptors. For decades, researchers have debated the neural mechanisms and noise sources that underlie this striking sensitivity. To address this question, we need to understand the constraints arising from the retinal output signals provided by distinct retinal ganglion cell types. It has recently been shown in the primate retina that On and Off parasol ganglion cells, the cell types likely to underlie light detection at the absolute visual threshold, differ fundamentally not only in response polarity, but also in the way they handle single-photon responses originating in rods. The On pathway provides the brain with a thresholded, low-noise readout, and the Off pathway with a noisy, linear readout. We outline the mechanistic basis of these different coding strategies and analyse their implications for detecting the weakest light signals. We show that high-fidelity, nonlinear signal processing in the On pathway comes with costs: more single-photon responses are lost and their propagation is delayed compared to the Off pathway. On the other hand, the responses of On ganglion cells allow better intensity discrimination compared to the Off ganglion cell responses near visual threshold.
DOI: 10.6084/m9.figshare.4232699.v1
title: SupplTable3_v1.5.xlsx

description: Data from zika virus analysis<br>
DOI: 10.6084/m9.figshare.4232693
title: SupplTable2_v1.5.xlsx

description: Data from zika virus analysis<br>
DOI: 10.6084/m9.figshare.4232717.v4
title: Processing of single-photon responses in the mammalian On and Off retinal pathways at the sensitivity limit of vision

description: Visually guided behaviour at its sensitivity limit relies on single-photon responses originating in a small number of rod photoreceptors. For decades, researchers have debated the neural mechanisms and noise sources that underlie this striking sensitivity. To address this question, we need to understand the constraints arising from the retinal output signals provided by distinct retinal ganglion cell types. It has recently been shown in the primate retina that On and Off parasol ganglion cells, the cell types likely to underlie light detection at the absolute visual threshold, differ fundamentally not only in response polarity, but also in the way they handle single-photon responses originating in rods. The On pathway provides the brain with a thresholded, low-noise readout, and the Off pathway with a noisy, linear readout. We outline the mechanistic basis of these different coding strategies and analyse their implications for detecting the weakest light signals. We show that high-fidelity, nonlinear signal processing in the On pathway comes with costs: more single-photon responses are lost and their propagation is delayed compared to the Off pathway. On the other hand, the responses of On ganglion cells allow better intensity discrimination compared to the Off ganglion cell responses near visual threshold.
DOI: 10.6084/m9.figshare.4232693.v1
title: SupplTable2_v1.5.xlsx

description: Data from zika virus analysis<br>
DOI: 10.6084/m9.figshare.4232678
title: Supplmental_Table_1.xlsx

description: Data from Zika virus analysis<br>