cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c59g5gq7m
title: MassIVE MSV000093219 - ROS transfer at peroxisome-mitochondria contact sites maintains mitochondrial redox homeostasis
title: Data deposited contain results from proximity-dependent biotinylation LC-MS (BioID) experiments in which T-REx Flp-In HEK293 cells express ACBD5 or PTPIP51 proteins fused to biotin carboxylase BirA.
DOI: 10.25345/c55q4rx3g
title: MassIVE MSV000093220 - NAK-associated protein 1/NAP1 activates TBK1 to ensure accurate mitosis and cytokinesis.
title: Supporting raw MS data for paper (doi: TBD) by Paul S. et al., titled "NAK-associated protein 1/NAP1 activates TBK1 to ensure accurate mitosis and cytokinesis". Index of MS supporting files uploaded: - Related to Figure 6A;S4A (AO3556-AO3579: whole proteome (Unimod: 35; 2016; 4)). - Related to Figure 6A-D;S4B-D (AO3580-AO3603: phospho proteome (Unimod: 35; 21; 2016; 4)). TMTpro channel: WT-UT (126, 127n, 127c, 128n), WT-MRT (128c, 129n, 129c, 130n), TBK1_KO-UT (130c, 131n, 131c, 132n), TBK1_KO-MRT (132c, 133n, 133c, 134n).
DOI: 10.17894/ucph.c376d9f4-514a-4ce1-92ff-1f059b3c7485
title: PLCI 2.0 Supplementary data

description: This archive contains data used in the development of the PLCI 2.0 model. Included are input datasets for the model, at the NUTS0, NUTS1, NUTS2, and NUTS3 levels. Included are also calculated data on the maximum crop P uptake, 'AlphaMax', for use in Michaelis Menten equation to estimate crop P uptake for the EU countries. AlphaMax was calculated based on the average crop yields and crop P content from Helin and Weikard (2019), weighted by the areal coverage of the crops (FAOSTAT, 2020). The EU average crop yields of several crops are included (average of 10 years, from 2011 to 2020) (FAOSTAT). Included are also output data from the PLCI 2.0 model of a case study of Copenhagen region, Denmark, and Piemonte region, Italy.
DOI: 10.5281/zenodo.10062515
title: The microglia cytotoxicity dataset of Manuscript ci-2023-017235, entitled "Prediction and interpretation microglia cytotoxicity by machine learning"

description:  The microglia cytotoxicity dataset of manuscript ci-2023-017235, entitled "Prediction and interpretation microglia cytotoxicity by machine learning", in Journal of Chemical Information and Modeling. Including all molecular SMILES and their cytotoxicity.
DOI: 10.5281/zenodo.10062514
title: The microglia cytotoxicity dataset of Manuscript ci-2023-017235, entitled "Prediction and interpretation microglia cytotoxicity by machine learning"

description:  The microglia cytotoxicity dataset of manuscript ci-2023-017235, entitled "Prediction and interpretation microglia cytotoxicity by machine learning", in Journal of Chemical Information and Modeling. Including all molecular SMILES and their cytotoxicity.
DOI: 10.5281/zenodo.10049221
title: PROJETO DE PESQUISA EM AGRONOMIA SOBRE UTILIZAÇÃO DE IMAGENS DE SATÉLITE PARA IDENTIFICAÇÃO DE ÁREAS DEGRADADAS EM PASTAGEM

description: O Brasil é um dos maiores exportadores de carne bovina do mundo, confirmando assim a importância da bovinocultura no agronegócio brasileiro, resultado esse devido a modernização de tecnologias e produção. A produção de rebanhos brasileiros tem como principal fonte de alimento as forrageiras que são usadas para pastagem em sistemas de manejo, extensivo, semi-intensivo e intensivo, manejos esses que trouxeram ganhos de produtividade. Cerca de 70% das pastagens no território brasileiro sofrem algum estágio de degradação. As pastagens são consideradas degradadas quando o seu vigor, produtividade e capacidade de recuperação não são mais possíveis e a qualidade da pastagem, ideal para os animais, e quando também não a superação dos efeitos como pragas, doenças e plantas invasoras. Esses efeitos acabam favorecendo a degradação avançada dos recursos naturais junto aos manejos inadequados. Desse modo, é de extrema importância tornar as pastagens mais produtivas e, de contribuir para a qualidade e o vigor das mesmas, sem haver a necessidade da abertura de novas áreas de pastagens. O principal objetivo desta pesquisa é demonstrar os estágios de degradação das pastagens de propriedades rurais, por meio de técnicas de geoprocessamento e sensoriamento remoto, via satélite, sendo possível fazer o mapeamento das áreas da propriedade e apontando as técnicas adequadas para a classificação de pastagens degradadas; separando os estágios de degradação e por fim monitorar e quantificá-las usando técnicas de geotecnologias.
DOI: 10.5517/ccdc.csd.cc2fbsn7
title: CCDC 2244699: Experimental Crystal Structure Determination

description: Related Article: Mei-Hua Yan, Manaswini Ray, Jun Wang, Lu Lu, Wei Zhang, Mohd. Muddassir, Aurobinda Mohanty|2023|New J.Chem.|47|19167|doi:10.1039/D3NJ03452F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fbsp8
title: CCDC 2244700: Experimental Crystal Structure Determination

description: Related Article: Mei-Hua Yan, Manaswini Ray, Jun Wang, Lu Lu, Wei Zhang, Mohd. Muddassir, Aurobinda Mohanty|2023|New J.Chem.|47|19167|doi:10.1039/D3NJ03452F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fbsq9
title: CCDC 2244701: Experimental Crystal Structure Determination

description: Related Article: Mei-Hua Yan, Manaswini Ray, Jun Wang, Lu Lu, Wei Zhang, Mohd. Muddassir, Aurobinda Mohanty|2023|New J.Chem.|47|19167|doi:10.1039/D3NJ03452F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fdx3w
title: CCDC 2246728: Experimental Crystal Structure Determination

description: Related Article: Dale T. Duncan, Samantha L. Piper, Maria Forsyth, Douglas R. MacFarlane, Mega Kar|2023|Phys.Chem.Chem.Phys.(PCCP)|25|27718|doi:10.1039/D3CP03694D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fdx4x
title: CCDC 2246729: Experimental Crystal Structure Determination

description: Related Article: Dale T. Duncan, Samantha L. Piper, Maria Forsyth, Douglas R. MacFarlane, Mega Kar|2023|Phys.Chem.Chem.Phys.(PCCP)|25|27718|doi:10.1039/D3CP03694D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fdx5y
title: CCDC 2246730: Experimental Crystal Structure Determination

description: Related Article: Dale T. Duncan, Samantha L. Piper, Maria Forsyth, Douglas R. MacFarlane, Mega Kar|2023|Phys.Chem.Chem.Phys.(PCCP)|25|27718|doi:10.1039/D3CP03694D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10057304
title: Split-beam echosounder data from keel-mounted EK60 during PolarFront 2023-08 cruise

description: PolarFront 2023-08 EK60
The keel-mounted Simrad EK60® split-beam echosounder continuously recorded hydroacoustic data at 18, 38, and 120 kHz. The ping rate was set to 1.5 seconds and pulse length to 1,024 µs.
DOI: 10.5281/zenodo.10057303
title: Split-beam echosounder data from keel-mounted EK60 during PolarFront 2023-08 cruise

description: PolarFront 2023-08 EK60
The keel-mounted Simrad EK60® split-beam echosounder continuously recorded hydroacoustic data at 18, 38, and 120 kHz. The ping rate was set to 1.5 seconds and pulse length to 1,024 µs.
DOI: 10.34740/kaggle/dsv/6855315
title: Reddit r/Ukraine Dataset
DOI: 10.6084/m9.figshare.24476632
title: Genomes of six pomegranate accessions, including genome fasta, cds fasta, pep fasta, and gff

description: Pomegranate (<i>Punica granatum</i> L.) is one of the most ancient edible fruit tree species. Here we reported a new chromosome-level genome assembly and annotation of sour pomegranate. We assembled the genome with a size of 331.47 Mb and used BUSCO to estimate the completeness of the assembly as 98.8%. More than 97.40% of sequences in the final assembly were anchored to 8 pseudochromosomes, higher than the corresponding percentages for the existing reference genomes ‘Tunisia’ (92.62%). Using a combination of de novo prediction, protein homology and RNA-seq annotation, 29,326 protein-coding genes were predicted. We re-annotated the protein-coding genes of five other published pomegranate genomes using the same annotation method. We constructed the pan-genome of pomegranate using protein-coding genes, integrating data from our newly assembled genome and five other published genomes. The pan-genome was composed of 28,314 gene families, of which 68.96% were core genes, 30.00% were dispensable genes, and 1.04% were private genes. The chromosome-level reference genome of sour pomegranate would be valuable resource for research and molecular breeding of pomegranate.
DOI: 10.6084/m9.figshare.24476458
title: <b>Nanoparticles Exhibiting Virus-Mimic Surface Topology for Enhanced Oral Delivery</b>

description: This file is the source data of our research article with the title "<b>Nanoparticles Exhibiting Virus-Mimic Surface Topology for Enhanced Oral Delivery</b>" which would be published in Nature Communications.
DOI: 10.6084/m9.figshare.24476458.v2
title: <b>Nanoparticles Exhibiting Virus-Mimic Surface Topology for Enhanced Oral Delivery</b>

description: This file is the source data of our research article with the title "<b>Nanoparticles Exhibiting Virus-Mimic Surface Topology for Enhanced Oral Delivery</b>" which would be published in Nature Communications.
DOI: 10.6084/m9.figshare.24476458.v1
title: 具有病毒模拟表面拓扑结构的纳米颗粒可增强口服递送

description: 本文件是我们的研究文章的源数据，标题为“Nanoparticles Exhibiting Virus-Mimic Surface Topology for Enhanced Oral Delivery”，该文章将发表在Nature Communications上。
DOI: 10.34740/kaggle/dsv/5238099
title: ArabicSL-Net
DOI: 10.5281/zenodo.10028983
title: ESTUDO DE CASO: DIAGNÓSTICO DE LINFOHISTIOCITOSE HEMOFAGOCÍTICA EM MULHER IMUNOCOMPETENTE NA AMAZÔNIA OCIDENTAL

description: A linfohistiocitose hemofagocítica (LHF) é uma síndrome imunológica rara e potencialmente fatal na qual ocorre ativação descontrolada de linfócitos e macrófagos citotóxicos, causando lesão nos tecidos mediada por citocinas e resulta em disfunções de múltiplos órgãos (GROM, Alexei; HORNE, AnnaCarin; BENEDETTI, Fabrizio, 2016).
DOI: 10.6084/m9.figshare.24476680
title: Flow cytometry data for competition analysis

description: Eight multidrug resistance plasmids conjugated into Escherichia coli MG1655. Competition between plasmid free and plasmid bearers.
DOI: 10.6084/m9.figshare.24466018
title: Supplementary Material for: Invasive cystic hypersecretory ductal carcinoma of breast: Challenges in diagnosis and man-agement

description: Cystic hypersecretory lesions of the breast are a spectrum of conditions ranging from cystic hyper-secretory hyperplasia, CHH with atypia and invasive cystic hypersecretory carcinoma. It is a sub-type of ductal carcinoma of breast. The tumour is very infrequent and hence, not studied extensive-ly. This culminates in the fact that it does not feature as part of the WHO classification of breast tumours. However, a good knowledge about its distinct pathological features can avert misdiagnosis and help to differentiate CHC from other conditions. So far only 22 cases of invasive CHC have been reported, 3 of which were microinvasive. Only 7 cases of axillary lymph node metastasis have been documented. We report a case of invasive cystic hypersecretory carcinoma of the breast that was metastatic to the axilla and refractory to neoadjuvant chemotherapy. Our case report aims to add to the limited store of information available on the disease, so that large scale studies can be conducted in the future in order to elaborate on its clinical and biological characteristics.
DOI: 10.6084/m9.figshare.24466018.v1
title: Supplementary Material for: Invasive cystic hypersecretory ductal carcinoma of breast: Challenges in diagnosis and man-agement

description: Cystic hypersecretory lesions of the breast are a spectrum of conditions ranging from cystic hyper-secretory hyperplasia, CHH with atypia and invasive cystic hypersecretory carcinoma. It is a sub-type of ductal carcinoma of breast. The tumour is very infrequent and hence, not studied extensive-ly. This culminates in the fact that it does not feature as part of the WHO classification of breast tumours. However, a good knowledge about its distinct pathological features can avert misdiagnosis and help to differentiate CHC from other conditions. So far only 22 cases of invasive CHC have been reported, 3 of which were microinvasive. Only 7 cases of axillary lymph node metastasis have been documented. We report a case of invasive cystic hypersecretory carcinoma of the breast that was metastatic to the axilla and refractory to neoadjuvant chemotherapy. Our case report aims to add to the limited store of information available on the disease, so that large scale studies can be conducted in the future in order to elaborate on its clinical and biological characteristics.
DOI: 10.6084/m9.figshare.24465778
title: Supplementary Material for: A case of traumatic submacular hemorrhage treated with tPA and pneumatic displacement

description: This is a case of a 31-year-old female who presented to the Emergency Department at a London teaching hospital with a 24-hour history of visual loss following an assault. The ophthalmological routine examination showed a sub-macular hemorrhage (SMH), and a computerized tomography (CT) scan demonstrated a displaced orbital floor fracture with inferior rectus entrapment and a medial wall fracture. To induce displacement of the SMH, intravitreal injection of 0.25 µg tissue plasminogen activator (tPA) was combined with 0.3 ml of intravitreal 100% perfluoropropane (C3F8) gas. At the 1-day follow-up, there was an inferotemporal displacement of the blood clot, and visual acuity improved from hand motions to 6/5 within 3 months. No complications occurred over 2 years of follow-up, with a final visual acuity of 6/5. This case shows us that intravitreal tPA and gas appear safe and effective as a treatment for traumatic SMHs. Furthermore, our results demonstrate that prompt treatment leads to favorable anatomical and functional outcomes.
DOI: 10.6084/m9.figshare.24465778.v1
title: Supplementary Material for: A case of traumatic submacular hemorrhage treated with tPA and pneumatic displacement

description: This is a case of a 31-year-old female who presented to the Emergency Department at a London teaching hospital with a 24-hour history of visual loss following an assault. The ophthalmological routine examination showed a sub-macular hemorrhage (SMH), and a computerized tomography (CT) scan demonstrated a displaced orbital floor fracture with inferior rectus entrapment and a medial wall fracture. To induce displacement of the SMH, intravitreal injection of 0.25 µg tissue plasminogen activator (tPA) was combined with 0.3 ml of intravitreal 100% perfluoropropane (C3F8) gas. At the 1-day follow-up, there was an inferotemporal displacement of the blood clot, and visual acuity improved from hand motions to 6/5 within 3 months. No complications occurred over 2 years of follow-up, with a final visual acuity of 6/5. This case shows us that intravitreal tPA and gas appear safe and effective as a treatment for traumatic SMHs. Furthermore, our results demonstrate that prompt treatment leads to favorable anatomical and functional outcomes.
DOI: 10.7910/dvn/98e9pi
title: Replication Data for: "Issue-area and pluralization in Brazilian foreign policy: an exploratory study of decision-making processes in the Fernando Henrique Cardoso government"

description: Data from the article "Issue-area and pluralization in Brazilian foreign policy: an exploratory study of decision-making processes in the Fernando Henrique Cardoso government", by Martin Egon Maitino, published in Revista DADOS, v. 67, n. 4 de 2024.
DOI: 10.21227/38fk-z839
title: BinSD_dataset

description: AI-powered binary code similarity detection (BinSD), which transforms intricate binary code comparison to the distance measure of code embedding through neural networks, has been widely applied to program analysis. However, due to the diversity of the adopted embedding strategies, evaluation methodologies, running environments, and/or benchmarks, it is difficult to quantitatively understand to what extent the BinSD problem has been solved, especially in real-world applications. Moreover, the lack of an in-depth investigation of the increasingly complex embedding neural networks and various evaluation methodologies has become the key factor hindering the development of AI-powered BinSD. To fill these research gaps, in this paper, we present a systematic evaluation of state-of-the-art AI-powered BinSD approaches by conducting a comprehensive comparison of BinSD systems on similar function detection and two downstream applications, namely vulnerability search and license violation detection. Building upon this evaluation, we perform the first investigation of embedding neural networks and evaluation methodologies. The experimental results yield several findings, which provide valuable insights in the BinSD domain, including (1) despite the GNN-based BinSD systems currently achieving the best performance in similar function detection, there still exists considerable space for improvements; (2) the capability of AI-powered BinSD approaches exhibits significant variation when applied to different downstream applications; (3) existing evaluation methodologies still need substantial adjustments. For instance, the evaluation metrics (such as the widely adopted ROC and AUC) usually fall short of accurately representing the model performance of the practical use in real-world scenarios. Based on the extensive experiments and analysis, we further provide several promising future research directions. To facilitate future work in this interesting research, we will open source the entire datasets, benchmarks, and implementation details.
DOI: 10.17909/edn8-2564
title: Data used for Mass Measurement of MOA-2008-BLG-379L

description: The Bennett et al. paper used this data with more recent Keck adaptive optics data to determine the masses and distance of the MOA-2008-BLG-379L planetary host star and its planet MOA-2008-BLG-379Lb
DOI: 10.6084/m9.figshare.24466606
title: Genome-wide association study of Streptococcus pneumoniae identifies disease-associated genetic variation

description: This study employed multiple GWAS analyses to compare genomic differences between infection and carriage isolates so as to determine whether genetic variation is unevenly enriched in the infection isolates. Briefly, a two-stage analysis process was employed to reveal the infection-associated k-mers by comprehensive GWAS analyses. First, a univariate LMM was fitted to initially screen infection-associated k-mers by the Pyseer (v1.3.10) Second, we used multiple methods (Scoary, LASSO and VSURF) to minimize false-positive associations and identify consensus infection-associated k-mers.The importance of k-mers was ranked by the mean decrease in impurity (Mean Decrease Gini, MDG), which is a measure of the predictor’s contribution to the correct sample classification.
DOI: 10.6084/m9.figshare.24466606.v3
title: Genome-wide association study of Streptococcus pneumoniae identifies disease-associated genetic variation

description: This study employed multiple GWAS analyses to compare genomic differences between infection and carriage isolates so as to determine whether genetic variation is unevenly enriched in the infection isolates. Briefly, a two-stage analysis process was employed to reveal the infection-associated k-mers by comprehensive GWAS analyses. First, a univariate LMM was fitted to initially screen infection-associated k-mers by the Pyseer (v1.3.10) Second, we used multiple methods (Scoary, LASSO and VSURF) to minimize false-positive associations and identify consensus infection-associated k-mers.The importance of k-mers was ranked by the mean decrease in impurity (Mean Decrease Gini, MDG), which is a measure of the predictor’s contribution to the correct sample classification.
DOI: 10.6084/m9.figshare.21218372
title: Spatial Cooperative Simulation of Land Use-Population-Economy in the Guangdong-Hong Kong-Macao Greater Bay Area, China

description: The data and codes that used in the research "Spatial Cooperative Simulation of Land Use-Population-Economy in the Guangdong-Hong Kong-Macao Greater Bay Area, China" was attahced as follows.The PLUS model was used as one kind of basic simulation models in this study. The software can be found in the "./plus_model" folder. A README file was included in this folder to show how the software can be utilized to implement our approach.The original data of land use, population, and economy can be found in the './original_data' folder and the corresponding driving factor data can be found in the './driving_factor' forlder. All these files was resampled into 1 km grids. These files were used as input data for simulation.The simulation results were included in the './simulated_data' folder. It included the simulation results of land use, population, and economic productions with our proposed approach. With the codes in the './ca_code' folder and the files in the './code_file' folder, the performance of our proposed approach can be evaluated with baseline approaches.The predicted scenarios of land use, population, and economic productions in the year of 2030 were included in the './predicted_data' folder.
DOI: 10.6084/m9.figshare.21218372.v10
title: 粤港澳大湾区土地利用-人口-经济空间协同模拟

description: “中国粤港澳大湾区土地利用-人口-经济空间协同模拟”研究中使用的数据和代码附后如下。<br>本研究采用PLUS模型作为基础仿真模型的一种。该软件可以在“./plus_model”文件夹中找到。此文件夹中包含一个自述文件，以显示如何利用该软件来实现我们的方法。<br>土地利用、人口、经济的原始数据可以在“./original_data”文件夹中找到，相应的驱动因素数据可以在“./driving_factor”文件夹中找到。所有这些文件都被重新采样到 1 km 网格中。这些文件被用作模拟的输入数据。<br>仿真结果包含在“./simulated_data”文件夹中。它包括土地利用、人口和经济生产的模拟结果。使用“./ca_code”文件夹中的代码和“./code_file”文件夹中的文件，可以使用基线方法评估我们提出的方法的性能。<br>2030 年土地利用、人口和经济生产的预测情景包含在“./predicted_data”文件夹中。