cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0159693.10fu
title: SH0159693.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0159694.10fu
title: SH0159694.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0159695.10fu
title: SH0159695.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0159696.10fu
title: SH0159696.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0159697.10fu
title: SH0159697.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0159698.10fu
title: SH0159698.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0159699.10fu
title: SH0159699.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.pgk29p
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paramolgus subincisus Humes, 1990"
 ]
}

 The dataset includes 16 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128070-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gn5zya
title: Occurrence Download

description: A dataset containing 271 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gennadas gilchristi Calman, 1925"
 ]
}

 The dataset includes 271 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120004-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mv69e8
title: Occurrence Download

description: A dataset containing 282 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Aquilaria malaccensis Lam., Aquilaria malaccensis Benth.)"
 ]
}

 The dataset includes 282 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127730-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pvcwbu
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callicostellopsis meridiensis (Müll.Hal.) Broth."
 ]
}

 The dataset includes 45 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111755-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9c494r
title: Occurrence Download

description: A dataset containing 907 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elatostema platyphyllum Wedd."
 ]
}

 The dataset includes 907 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251482-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.898j6y
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Geocerceis barbarae Menzies & Glynn, 1968"
 ]
}

 The dataset includes 22 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120026-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6wqncn
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acontiostoma tuberculata Lowry & Stoddart, 1983"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111756-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xadk4k
title: Occurrence Download

description: A dataset containing 292 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Osmunda javanica Blume"
 ]
}

 The dataset includes 292 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251488-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yyfaug
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gephyrocuma repandum Hale, 1944"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120038-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5yue6x
title: Occurrence Download

description: A dataset containing 1329 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acropora austera (Dana, 1846)"
 ]
}

 The dataset includes 1329 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134868-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g7bhy5
title: Occurrence Download

description: A dataset containing 491 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stipa borysthenica Klokov ex Prokudin",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "Year is greater than or equal to 1990",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 491 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164316-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uzzk86
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pyrrosia tonkinensis (Giesenh.) Ching"
 ]
}

 The dataset includes 138 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251497-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11237987
title: DACHS/MOFs/AutoMOFs_5/Synthesis

description: DACHS:

The DACHS (Database for Automation, Characterization and Holistic Synthesis) project aims to create completely traceable experimental data, covering syntheses, measurements, analyses, and interpretations.  DACHS_MOFs focuses on the synthesis and characterisation of metal-organic frameworks, across multiple, automation-assisted experimental series (AutoMOFs), with the overall goal of producing reproducible MOF samples through tracking of the synthesis parameters. 

DACHS_MOFs is simultaneously used to test the DACHS principles. 

This upload contain synthesis data from AutoMOFs_5 in HDF5 format (.h5). Each .h5 file contains detailed information on the chemical, experimenal, and synthesis parameters used during the synthesis of a single AutoMOF sample.

AutoMOFs_5

What: 57 samples (H001 - H011, L001 - L007, M001 - M017, T000 - T021)

Why: Consistency/repeatability, Injection speed, Injection order, Injection method, Time

When:  08/08/2022

Sample Naming

Sample denoted as "H" are synthesised by hand, pouring the linker solution (Solution1) into the metal solution (Solution0), (e.g. "Hand sample, metal first")

Sample denoted as "L" are synthesised by injecting the metal solution (Solution1) first (e.g. "linker first")

Sample denoted as "M" are synthesised by injecting the metal solution (Solution0) first (e.g. "metal first")

Samples denoted as "T" are synthesised by injecting the metal solution (Solution0) and linker solution (Solution1) simultaneously (e.g. "togeter")

How to view the files:

To open files, any HDF5 compatable viewer should work (e.g. DAWN, HDF view, H5Web etc). 

File structure:

Detailed synthesis descriptions can be found for each sample within each file, and are stored in /DACHS/Synthesis/Description

Experimetal set-up are stored in /DACHS/Synthesis/Description

Chemicals, including starting compounds, mixtures, and (potential-, target- and final) products are given in the /DACHS/Chemicals

Parameters that might be of interest to the synthesis are stored in /DACHS/Synthesis/DerivedParameters

Additional notes on samples/oddities arrising from their synthesis are stored in /DACHS/Synthesis/DerivedParameters/Note

File storage:

To maintain compatability with scripts uploadedd to the DACHS community, data from this upload should be stored locally in the following file path: 

DACHS/MOFs/AutoMOFs_5/Synthesis
DOI: 10.5281/zenodo.11237988
title: DACHS/MOFs/AutoMOFs_5/Synthesis

description: DACHS:

The DACHS (Database for Automation, Characterization and Holistic Synthesis) project aims to create completely traceable experimental data, covering syntheses, measurements, analyses, and interpretations.  DACHS_MOFs focuses on the synthesis and characterisation of metal-organic frameworks, across multiple, automation-assisted experimental series (AutoMOFs), with the overall goal of producing reproducible MOF samples through tracking of the synthesis parameters. 

DACHS_MOFs is simultaneously used to test the DACHS principles. 

This upload contain synthesis data from AutoMOFs_5 in HDF5 format (.h5). Each .h5 file contains detailed information on the chemical, experimenal, and synthesis parameters used during the synthesis of a single AutoMOF sample.

AutoMOFs_5

What: 57 samples (H001 - H011, L001 - L007, M001 - M017, T000 - T021)

Why: Consistency/repeatability, Injection speed, Injection order, Injection method, Time

When:  08/08/2022

Sample Naming

Sample denoted as "H" are synthesised by hand, pouring the linker solution (Solution1) into the metal solution (Solution0), (e.g. "Hand sample, metal first")

Sample denoted as "L" are synthesised by injecting the metal solution (Solution1) first (e.g. "linker first")

Sample denoted as "M" are synthesised by injecting the metal solution (Solution0) first (e.g. "metal first")

Samples denoted as "T" are synthesised by injecting the metal solution (Solution0) and linker solution (Solution1) simultaneously (e.g. "togeter")

How to view the files:

To open files, any HDF5 compatable viewer should work (e.g. DAWN, HDF view, H5Web etc). 

File structure:

Detailed synthesis descriptions can be found for each sample within each file, and are stored in /DACHS/Synthesis/Description

Experimetal set-up are stored in /DACHS/Synthesis/Description

Chemicals, including starting compounds, mixtures, and (potential-, target- and final) products are given in the /DACHS/Chemicals

Parameters that might be of interest to the synthesis are stored in /DACHS/Synthesis/DerivedParameters

Additional notes on samples/oddities arrising from their synthesis are stored in /DACHS/Synthesis/DerivedParameters/Note

File storage:

To maintain compatability with scripts uploadedd to the DACHS community, data from this upload should be stored locally in the following file path: 

DACHS/MOFs/AutoMOFs_5/Synthesis
DOI: 10.15468/dl.ug4vqh
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Dioon argenteum T.J.Greg., Chemnick, Salas-Mor. & Vovides, Dioon angustifolium Miq., Ceratozamia zoquorum Pérez-Farr., Vovides & Iglesias)"
 ]
}

 The dataset includes 83 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160214-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.56enyk
title: Occurrence Download

description: A dataset containing 247183 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Succisa pratensis Moench",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "Year is greater than or equal to 1990",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 247183 records from 668 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164330-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ba5guw
title: Occurrence Download

description: A dataset containing 279 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Messor wasmanni Krausse, 1910"
 ]
}

 The dataset includes 279 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127768-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3cxh8y
title: Occurrence Download

description: A dataset containing 840 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyperus flavidus Retz.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 840 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0191674-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rgz7f2
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Nicaragua, Honduras)",
 "OccurrenceStatus is Present",
 "TaxonKey is Soricidae"
 ]
}

 The dataset includes 73 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239963-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11387371
title: Understanding woody plant encroachment: A plant functional trait approach
DOI: 10.5281/zenodo.11387372
title: Understanding woody plant encroachment: A plant functional trait approach
DOI: 10.15468/dl.4yudrp
title: Occurrence Download

description: A dataset containing 360 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Boechera suffrutescens (S.Watson) Dorn"
 ]
}

 The dataset includes 360 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0147929-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zjgasj
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Petrolisthes leptocheles (Heller, 1861)"
 ]
}

 The dataset includes 101 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0129224-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.