cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15482/usda.adc/1528792
title: Data from: Insecticidal Management of Rangeland Grasshoppers Using Remotely Piloted Aerial Application System

description: Grasshoppers are integral parts of rangeland ecosystems but also have the potential to reach population densities high enough (outbreaks) to cause serious economic damage from forage loss and affect adjacent crops. The objective of this study was to investigate the efficacy of treating grasshopper population hotspots with a liquid insecticide using a remotely piloted aerial application system (RPAAS), as opposed to fixed-wing aircraft, which is the most common method currently in use. A liquid insecticide, Sevin XLR PLUS (containing carbaryl), was applied on replicated 4.05-hectare (10-acre) plots with an RPAAS on a ranch in New Mexico. Our results demonstrated that Sevin XLR PLUS significantly suppressed grasshopper populations over a 14-day period (normalized population reduction was 79.11 ± 8.35% SEM) and quite rapidly (mostly by day 3) compared to untreated controls. These results are comparable to those achieved with fixed-wing aircraft. The RPAAS covered the whole test area in a single flight in approximately 5 min, making these population hotspot treatment applications relatively rapid, potentially more cost-effective, and more targeted in comparison to fixed-wing aircraft. Before adoption as an application method option, further research is recommended on using an RPAAS to cover larger areas in combination with using diflubenzuron-based insecticides, which are often preferred.
DOI: 10.5281/zenodo.7851053
title: Genetic control of the dynamic transcriptional response to immune stimuli and glucocorticoids at single cell resolution

description: Supplementary Tables for article "Genetic control of the dynamic transcriptional response to immune stimuli and glucocorticoids at single cell resolution"<br>
DOI: 10.5281/zenodo.7851052
title: Genetic control of the dynamic transcriptional response to immune stimuli and glucocorticoids at single cell resolution

description: Supplementary Tables for article "Genetic control of the dynamic transcriptional response to immune stimuli and glucocorticoids at single cell resolution"<br>
DOI: 10.35077/act-low
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 1067599469

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 1067599469', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H20.03.310', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'44', Ageunit:'years', Sex:'Male', Genotype:'culture, enhancer AAV', OrganName:'Brain', SampleLocalID:'1067599469', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24543', Locations:'CgGr' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.35077/act-mad
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 1067605482

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 1067605482', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H20.03.310', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'44', Ageunit:'years', Sex:'Male', Genotype:'culture, enhancer AAV', OrganName:'Brain', SampleLocalID:'1067605482', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24544', Locations:'CgGr' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.6073/pasta/e4a2adf5de68cbee7f0218cddbd44ea2
title: Stream algal transect locations, McMurdo Dry Valleys, Antarctica (1993-2023, ongoing)

description: As part of the Long Term Ecological Research (LTER) project in the McMurdo Dry Valleys of Antarctica, a systematic sampling program has been undertaken to monitor the abundance and species distribution of algal mats in glacial meltwater streams of that region. The transect locations table documents specific locations where such work has been performed.
DOI: 10.35077/act-map
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 1069242387

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 1069242387', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H20.26.411', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'50', Ageunit:'years', Sex:'Male', Genotype:'culture, enhancer AAV', OrganName:'Brain', SampleLocalID:'1069242387', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24545', Locations:'SFG' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.35077/act-mat
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 1069256863

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 1069256863', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H20.26.411', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'50', Ageunit:'years', Sex:'Male', Genotype:'culture, enhancer AAV', OrganName:'Brain', SampleLocalID:'1069256863', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24546', Locations:'SFG' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.6073/pasta/2129834480374f572fd995935002a23d
title: Stream descriptions, McMurdo Dry Valleys, Antarctica (1993-2023, ongoing)

description: As part of the Long Term Ecological Research (LTER) project in the McMurdo Dry Valleys of Antarctica, a systematic sampling program has been undertaken to monitor the the glacial meltwater streams in the region. Measurements are regularly made to examine water quality and quantity, as well as chemical and biological properties. The stream descriptions table serves as an index of the streams that have been studied. It documents the streams' basins and lengths, and provides a brief desciption of the landscape in which the streams are found.
DOI: 10.35077/act-men
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 1072170652

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 1072170652', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H20.06.356', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'44', Ageunit:'years', Sex:'Male', Genotype:'culture, enhancer AAV', OrganName:'Brain', SampleLocalID:'1072170652', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24547', Locations:'SFG' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.25345/c50p0x17d
title: MassIVE MSV000091760 - Epigenetic reprogramming shapes the cellular landscape of schwannoma
title: Mechanisms specifying cancer cell states and response to therapy are incompletely understood. Here show epigenetic reprogramming shapes the cellular landscape of schwannomas, the most common tumors of the peripheral nervous system. We find schwannomas are comprised of 2 molecular groups that are distinguished by activation of neural crest or nerve injury pathways that specify tumor cell states and the architecture of the tumor immune microenvironment. Moreover, we find radiotherapy is sufficient for interconversion of neural crest schwannomas to immune-enriched schwannomas through epigenetic and metabolic reprogramming. To define mechanisms underlying schwannoma groups, we develop a technique for simultaneous interrogation of chromatin accessibility and gene expression coupled with genetic and therapeutic perturbations in single-nuclei. Our results elucidate a framework for understanding epigenetic drivers of tumor evolution and establish a paradigm of epigenetic and metabolic reprograming of cancer cells that shapes the immune microenvironment in response to radiotherapy.
DOI: 10.25919/fcre-np22
title: Parkes observations for project P1149 semester 2022OCTS_06

description: We propose continued Parkes follow-up observations of a new pulsar discovered from the ongoing SMART pulsar survey with the MWA. Initial analysis from Parkes and GMRT follow-ups suggests that the pulsar likely belongs to the rare class of low-luminosity, steep-spectrum pulsars. This class of pulsars make up ~2% of the currently-known population of long-period pulsars, and as such understanding their emission and spectral properties is vital for developing a more comprehensive picture of the Galactic population of pulsars, and also to make meaningful forecast for the detectable population of pulsars in future low-frequency surveys, including those planned with SKA-Low. The proposed observations, along with an interferometric position that we hope to obtain from GMRT imaging will allow us to obtain a timing solution on a faster time frame, thereby allowing us to determine the pulsar's spin and astrometric parameters. The observations will also yield more reliable estimates of pulsar flux density measurements, allowing us to determine the pulsar's spectral and luminosity properties.
DOI: 10.15151/esrf-es-1164988217
title: Structural Biology at EMBL Grenoble, IBS-CIBB and IAB

description: This proposal clusters crystallography projects at the EMBL Grenoble, IBS and IAB working on different topics with a focus on nucleic acid-protein complexes and host-pathogen interactions. The proposers have long-standing experience in the use, as well as the development of beam lines for macromolecular crystallography and have participated in successive BAG applications over the years, mostly at the ESRF but also at other synchrotrons (i.e. Soleil, Petra II, Diamond, SLS)
DOI: 10.15151/esrf-es-1171245142
title: Protein dynamics of resurrected ancestral enzymes studied by crystallography.

description: Adaptation of organisms to environmental niches is a hallmark of evolution. One prevalent example is that of thermal adaptation, where in two descendants evolve at different temperature extremes. How dynamical changes due to adaptive mutations are allosterically propagated to the active site, to modulate activity, in different thermally adapted enzyme is not known. To address this question we analyze the properties of resurrected ancestral enzymes engaged in a thermal adaptation route we recapitulated. We will solve the crystal structure several billions-years old enzymes and we will explore their dynamical properties following X-rays data collection at various temperature. We expect describing the evolutionary-driven reorganization of contacts network that are required to conserve appropriate conformational stability and efficient functional dynamics during the early steps of an enzyme adaptive process.
DOI: 10.34683/sr1829
title: StoneRounds Case: SR1829
title: Type 1 Usher Syndrome

description: StoneRounds Case SR1829 was diagnosed with Type 1 Usher Syndrome likely caused by mutations in the gene: MYO7A.
DOI: 10.6084/m9.figshare.19247931
title: Training data for MoTaNbTi quaternary interatomic potential.

description: The training and test data are BSON files using Mongodump from the MongoDB database. These files can be restored using the mongorestore utility. Each entry includes the structure, energy, force, and stress calculated from density functional theory (DFT). The total number of entries is 18870. <br>
DOI: 10.35077/act-met
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 1077530486

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 1077530486', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H21.26.402', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'80', Ageunit:'years', Sex:'Male', Genotype:'culture, enhancer AAV', OrganName:'Brain', SampleLocalID:'1077530486', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24548', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.18739/a2639k67k
title: Greenland ice melange fragmentation theory curve parameters from digital elevation models (2011-2020)

description: These files contain the manually-adjusted fragmentation theory parameters fit to iceberg size distributions extracted from high-resolution digital elevation models for ice melange near the termini of 16 Greenland Ice Sheet outlet glaciers. Parameters can be used to solve the number density of iceberg fragments using the fragmentation theory curve for icebergs, as defined in Astrom et al. (2020; https://doi.org/ 10.1017/jog.2021.14), where n(v) = c1*v-ae-v/c2 + c3*dv*e-v/c4. v is the mean volume for each “bin” in the iceberg size distribution and dv is the bin width. The first term on the right is a power law with a cut-off, which is used to describe the scale-invariant nature of brittle fragmentation. The second term on the right describes uncorrelated fractures that commonly produce large, tabular icebergs. The value for a is physically-based and is defined by the dimension of the variable and we use a=2. When the manually-adjusted equation to describe iceberg calving over-estimated the smallest iceberg size classes, the equation was modified to include a second power law function to account for secondary modification of the iceberg size distributions that cannot be explained by the calving processes: n(v) = c1*v-ae-v/c2 + c3*dv*e-v/c4+ c5*v-c6 These data can be used to identify the primary mechanisms responsible for iceberg calving for the sites and dates specified by the files.
DOI: 10.35077/act-mix
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 1079568285

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 1079568285', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H21.03.302', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'67', Ageunit:'years', Sex:'Male', Genotype:'culture, enhancer AAV', OrganName:'Brain', SampleLocalID:'1079568285', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24536', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.5517/ccdc.csd.cc20dx6k
title: CCDC 1859448: Experimental Crystal Structure Determination

description: Related Article: Satabdi Roy, Michael Böhme, Sudhir Lima, Monalisa Mohanty, Atanu Banerjee, Axel Buchholz, Winfried Plass, Sharan Rathnam, Indranil Banerjee, Werner Kaminsky, Rupam Dinda|2022|Eur.J.Inorg.Chem.|2022|e202200109|doi:10.1002/ejic.202200109
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.