cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.t7g7cj4/2
title: O. rufipogon genome aligned to O. barthii or O. glaberrima

description: O. rufipogon reference genome sequence was aligned to O. barthii or O. glaberrima reference genome. For every O. barthii or O. glaberrima coordinate was converted into O. rufipogon sequence resulting in a O. barthii-ized or O. glaberrima-ized O. rufipogon genome sequence. Not alignable regions were indicated as 'N'.
DOI: 10.5061/dryad.t7g7cj4/3
title: Haplotype Network

description: Phased vcf file for the genes sh1, sh4, and PROG1 region. Data used to estimate the haplotype network.
DOI: 10.5061/dryad.t7g7cj4/4
title: ngsCovar PCA result

description: Genotype likelihood based PCA analysis of O. glaberrima population.
DOI: 10.5061/dryad.t7g7cj4/5
title: Phylogenomic and phylogenetic tree plotted with iTol

description: Newick format trees for genome-wide and the 3 domestication genes. Tree can be visualized on iTol (http://itol.embl.de) and colored using the supplied itol file.
DOI: 10.5061/dryad.t7g7cj4/6
title: Pairwise Fst values

description: All pairwise genome-wide Fst values calculated using ANGSD.
DOI: 10.5061/dryad.t7g7cj4/7
title: Theta and related population genetics statistics

description: Genome-wide theta and related population genetics statistics calculated using ANGSD.
DOI: 10.5061/dryad.t7g7cj4/8
title: LD statistics

description: LD values calculated using PLINK for each genetic group.
DOI: 10.5061/dryad.t7g7cj4/9
title: Genotypes surrounding domestication gene

description: File used to visualize the SNPs (genotypes) surroinding domestication gene of interest.
DOI: 10.5524/101523
title: Image data of Nanmaohu Park vascular plant specimen, RL0460

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the  samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).In total, 760 specimens yielded DNA suitable for sequencing. The other 333 samples are vouchered and images of those plants are available in those datasets. The 760 samples represented ~696 vascular plant species from 135 families belonging to 48 different orders.There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. This dataset contains images from the plant vouchered as HCNGB:RUILI:HCNGB_00002122. Preliminary identification is that it is of the family uncharacterized vascular plant. Unforuntaly insufficient DNA was extracted from the sample to make suquencing possible at this time.
DOI: 10.17632/h2jf24zm33.1
title: Data for: STRATEGIES FOR THERMAL COMFORT IN UNIVERSITY BUILDINGS The case of the Faculty of Architecture of UFBA.

description: Data collected for the doctoral research.
DOI: 10.5061/dryad.2hp4hq3/2
title: McGarry et al Suicidality in HD Supplementary Material 10.31.18
DOI: 10.5061/dryad.3503s21/1
title: full_filt.vcf

description: Fully filtered vcf file containing the genotypes for the 239 individuals genotyped at 5,907 single nucleotide polymorphisms used in the final analysis of this study. Population of origin is encoded by first two letters of the sample id.  Population locations are below.                         
Site	Lat	Long
HB	41.509056	-71.045806
SR	41.379712	-71.5263
BP	41.714325	-71.188497
RB	39.51444444	-74.31583333
OC	39.8082	-74.1850805
MG	40.05055556	-74.07027778
DOI: 10.5061/dryad.4809qj4/1
title: Dataset 4

description: Please see readme and description of dataset 4 in publication.
DOI: 10.5061/dryad.4809qj4/2
title: Dataset 5

description: Please see readme and description of dataset 5 in publication.
DOI: 10.5061/dryad.4809qj4/3
title: Dataset 1

description: Please see readme and description of dataset 1 in publication.
DOI: 10.5061/dryad.4809qj4/4
title: Dataset 3

description: Please see readme and description of dataset 3 in publication.
DOI: 10.5061/dryad.4809qj4/5
title: Dataset 2

description: Please see readme and description of dataset 2 in publication.
DOI: 10.5061/dryad.61pt552/1
title: Experiment A
DOI: 10.5061/dryad.61pt552/2
title: Experiment B
DOI: 10.5061/dryad.61pt552/3
title: Experiment C
DOI: 10.5061/dryad.61pt552/4
title: Experiment D
DOI: 10.5061/dryad.bf144m6/7
title: Exponential growth of evolved & ancestor E. cloacae in vitro

description: tab delimited text
DOI: 10.5061/dryad.bf144m6/8
title: Impact of evolved E cloacae lineages on host growth & survival

description: tab delimited text file
DOI: 10.5061/dryad.bj3570d/1
title: Raw data

description: This file contains raw data of contact angle assay(figure 3)， cell proliferation assay(figure 5)，and quantitative real-time PCR(figure 6).
DOI: 10.5061/dryad.gm3vr7s/1
title: AllLarvaToAdultData

description: Counts of number of adults emerged per vial in "larva to adult" viability assays
DOI: 10.5061/dryad.gm3vr7s/2
title: cad_egg

description: Counts of adults emerged per replicate from "EGG to adult" viability assay in CADMIUM assay.
DOI: 10.5061/dryad.gm3vr7s/3
title: salt_egg

description: Counts of number of adults emerged per replicate from "EGG to adult" viability assay in SALT assay
DOI: 10.5061/dryad.h622t6p/1
title: SeedRetentionTime

description: Data of mean seed retention time (mean SRT) of animals, obtained from 103 publications. Basically, each row correspponds to SRT data of an animal for a plant species. A few studies measured SRT of an animal for single plant species repeatedly with different conditions. In that case, we present each mesurement separately. When mean SRT data were pooled for several plants, they are shown in round brakets in the column "Plant Nomenclature" (e.g. "(5 Piper species)"), and when pseudo-seeds were used, it is shown in square brakets in the column (e.g. "[plastic marker]"). Data extracted from figures were indicated in "Note".
DOI: 10.5061/dryad.h622t6p/2
title: AnimalTraits

description: Information of traits of the 112 animals, for which we could obtain mean seed retention time. They include 51 birds, 47 mammals, 7 reptiles, 5 fishes and 2 invertebrates. Body mass, food habit, and degestive strategy of each animal are shown. Food habits are indicated as categories; C, carnivore (including insectivore); F, frugivore; H, hervirore; O, ominivore.
DOI: 10.5061/dryad.h622t6p/3
title: DataSource

description: List of the 103 publications from which we extracted mean seed retention times (SRTs) of animals for our analysis.
DOI: 10.5061/dryad.h622t6p/4
title: birds_50spp

description: A phylogenetic tree of the focal birds (50 species) in Newick format.
DOI: 10.5061/dryad.h622t6p/5
title: mammals_45spp

description: A phylogenetic tree of the focal mammals (45 species) in Newick format.
DOI: 10.5061/dryad.jv4nd82/10
title: H3 phylogenetic file of Japan and North America species

description: H3 phylogenetic tree file of Japan and North America stoneflies species.
DOI: 10.5061/dryad.jv4nd82/8
title: Phylogenetic tree file of H3 with node calibration

description: Phylogenetic tree file H3 molecular marker obtained as the output file of pooling fossil calibration and biogeographical calibration analysis using Log Combiner software in BEAST package.
DOI: 10.5061/dryad.jv4nd82/9
title: H3 alignment file of Japan and North America species

description: H3 alignment file of Japan and North America stoneflies species.
DOI: 10.5061/dryad.m66b10q/10
title: Den Boer et al_Ungual-Lateral_Results
DOI: 10.5061/dryad.m66b10q/7
title: Den Boer et al_Astragalus-Posterior_Results
DOI: 10.5061/dryad.m66b10q/8
title: Den Boer et al_Astragalus-LinearMeasurements
DOI: 10.5061/dryad.m66b10q/9
title: Den Boer et al_Ungual-Dorsal_Results
DOI: 10.5061/dryad.nc220/10
title: Initial_GenBank_Download.gb

description: Initial GenBank download file of all hepatitis B virus sequences as of March 20, 2013.
DOI: 10.5061/dryad.nc220/11
title: S-region_trees.zip

description: Trees estimate from S-region alignments of hepatitis B viruses. Includes the best maximum likelihood tree with bootstrap support values, and a file with the bootstrap replicates.
DOI: 10.5061/dryad.nc220/12
title: Total_alignment_trees.zip

description: Trees estimated from total alignments (genomes + fragmentary sequences) of hepatitis B viruses. Includes trees estimated from manual and UPP alignments.
DOI: 10.5061/dryad.nc220/16
title: Supplementary_Table_S2.xlsx

description: Genotype occupancy values for hepatitis B viruses. Genotype occupancy is the proportion of each genotype that makes up the minimum clade including all individuals of that genotype. Values are given for each tree (named according to alignment method), genotype, and bootstrap support cutoff for collapsing branches. The total number of sequences (i.e., tips in the tree) are indicated for each genotype.
DOI: 10.5061/dryad.nc220/5
title: Genotype_trees.zip

description: Tree files used for genotype occupancy tests in hepatitis B viruses. Trees estimated from manual or PASTA genome alignments. Files include .tre and .xml format.
DOI: 10.5061/dryad.nc220/6
title: GI_Clustering.zip

description: Initial files of hepatitis B virus sequences clustered according to GenBank GI number.
DOI: 10.5061/dryad.nc220/7
title: Supplementary_Table_S1.xlsx

description: Pairwise comparisons of hepatitis B virus phylogenies. Tree names (based on alignment type) are listed in the first two columns. Tree incompatibility ratios (T.ratio) and Robinson-Fould distances (RF dsitance) are listed for each tree comparison and boostrap support threshold (Cutoff).
DOI: 10.5061/dryad.nc220/9
title: Supplementary_Information.docx

description: List of commands used in software programs for the alignment and tree estimation of hepatitis B virus sequences.
DOI: 10.5061/dryad.p1n53q4/1
title: Supplement Data

description: Supplement Data for "Abnormal thalamo-cortical network dynamics in migraine"
DOI: 10.5061/dryad.q2cc41c/1
title: Data used in Javoiš et al (Journal of Evolutionary Biology)

description: Data set containing species used in the study of sensory capacity of geometrid moths. Data collected from lab, photo-based measurements and literature sources.
DOI: 10.5061/dryad.t40nj78/10
title: 76 single-end dual RNA-seq simulated sequencing dataset: 80% pathogen

description: Simulated dual RNA-seq dataset in which host is Arabidopsis thaliana and pathogen is Schizosaccharomyces octosporus. Dataset contains 10 million 76 single-end reads, and the reads are 80% pathogen and 20% host.
DOI: 10.5061/dryad.t40nj78/11
title: 76 single-end dual RNA-seq simulated sequencing dataset: 90% pathogen

description: Simulated dual RNA-seq dataset in which host is Arabidopsis thaliana and pathogen is Schizosaccharomyces octosporus. Dataset contains 10 million 76 single-end reads, and the reads are 90% pathogen and 10% host.
DOI: 10.5061/dryad.t40nj78/12
title: 76 single-end dual RNA-seq simulated sequencing dataset: 100% pathogen

description: Simulated dual RNA-seq dataset in which host is Arabidopsis thaliana and pathogen is Schizosaccharomyces octosporus. Dataset contains 10 million 76 single-end reads, and the reads are 100% pathogen and 0% host.
DOI: 10.5061/dryad.t40nj78/9
title: 76 single-end dual RNA-seq simulated sequencing dataset: 70% pathogen

description: Simulated dual RNA-seq dataset in which host is Arabidopsis thaliana and pathogen is Schizosaccharomyces octosporus. Dataset contains 10 million 76 single-end reads, and the reads are 70% pathogen and 30% host.
DOI: 10.5061/dryad.t7g7cj4/11
title: Filtered VCF file used in study (chr1) - glaberrima as reference genome

description: O. glaberrima reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/12
title: Filtered VCF file used in study (chr2) - glaberrima as reference genome

description: O. glaberrima reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/13
title: Filtered VCF file used in study (chr3) - glaberrima as reference genome

description: O. glaberrima reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/14
title: Filtered VCF file used in study (chr4) - glaberrima as reference genome

description: O. glaberrima reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/15
title: Filtered VCF file used in study (chr5) - glaberrima as reference genome

description: O. glaberrima reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/16
title: Filtered VCF file used in study (chr6) - glaberrima as reference genome

description: O. glaberrima reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/17
title: Filtered VCF file used in study (chr7) - glaberrima as reference genome

description: O. glaberrima reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/18
title: Filtered VCF file used in study (chr8) - glaberrima as reference genome

description: O. glaberrima reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t8sm188/1
title: Raw_data_Leftwich et al_Evolution_MS_ID 18-0646

description: Raw data for the manuscript "Contribution of maternal effects to dietary selection in Mediterranean fruit flies"
DOI: 10.5061/dryad.v3539d2.1
title: Data from: Innate ability of goats to sense and avoid ingestion of noxious insects while feeding
DOI: 10.5061/dryad.v3539d2.1/1.1
title: Supplementary movie 1

description: A naive kid presented with a choice between control (left bowl) and webworm leaves (right bowl). The kid began feeding from the webworm leaves (first bite) yet, proceeded to feed from the control leaves. Once the control leaves were completely consumed, the kid fed on the webworm leaves while efficiently avoiding webworm ingestion. Video speed increased by ×5.
DOI: 10.5061/dryad.v3539d2.1/2.1
title: Supplementary movie 2

description: Probing behaviour while feeding on leaves with webworms (right bowl). By repeatedly touching the leaves with its muzzle (probing), the kid was able to pick webworm-free leaves. Video speed increased by ×5.
DOI: 10.5061/dryad.v3539d2.2/1.2
title: Supplementary movie 1

description: A naive kid presented with a choice between control (left bowl) and webworm leaves (right bowl). The kid began feeding from the webworm leaves (first bite) yet, proceeded to feed from the control leaves. Once the control leaves were completely consumed, the kid fed on the webworm leaves while efficiently avoiding webworm ingestion. Video speed increased by ×5.
DOI: 10.5061/dryad.v3539d2.2/3.2
title: Supplementary movie 3

description: A feeding kid (not naïve) avoiding the ingestion of numerous webworms (non-choice trial). All six webworms remain intact. Video speed increased by ×5.
DOI: 10.5061/dryad.1qh6772/1
title: Lineage Specific Zoospore Loads by dPCR

description: Data from: Globally invasive genotypes outcompete enzootic amphibian chytrid lineages under coinfection.
DOI: 10.5061/dryad.1qh6772/2
title: Post-mortem Lineage Specific Zoospore Loads by dPCR

description: Data from: Globally invasive genotypes outcompete enzootic amphibian chytrid lineages under coinfection.
DOI: 10.5061/dryad.1qh6772/3
title: Bd_Competition_Week1_dPCR

description: Week 1 time series data from:  Globally invasive genotypes outcompete enzootic amphibian chytrid lineages under coinfection.
DOI: 10.5061/dryad.1qh6772/4
title: Bd_Competition_Week4_dPCR

description: Week 4 time series data from: Globally invasive genotypes outcompete enzootic amphibian chytrid lineages under coinfection.
DOI: 10.5061/dryad.1qh6772/5
title: Bd_Competition_Week7_dPCR

description: Week 7 time series data from:  Globally invasive genotypes outcompete enzootic amphibian chytrid lineages under coinfection.
DOI: 10.5061/dryad.1qh6772/6
title: Bd_Competition_Week10_dPCR

description: Week 10 time series data from: Globally invasive genotypes outcompete enzootic amphibian chytrid lineages under coinfection.
DOI: 10.5061/dryad.24c3s89/1
title: grid_cell_pcoa_scores

description: File containing the average PCoA scores of all species present in each grid cell, for grid cell with at least 10 species, as well as environmental data for each grid cell (Net primary productivity, Annual Temperature, Altitudinal Range, Human Influence Index, Species Richness) (12705 rows in total). See data description below:
HBWID, ID of the grid cell corresponding in world_bird_grid.shp;
A1_mean, the average score of species present in the grid cell on the first axis of the PCoA;
A2_mean, the average score of species present in the grid cell on the second axis of the PCoA;
A3_mean, the average score of species present in the grid cell on the third axis of the PCoA;
A4_mean, the average score of species present in the grid cell on the fourth axis of the PCoA;
X_COORD, longitude of the centroid of the grid cell;
Y_COORD, latitude of the centroid of the grid cell;
NPP, Net primary productivity in grid cell (in kg of carbon per square meter);
TEMP, Annual temperature in grid cell (in degree Celsius);
TOPO, Altitudinal range in grid cell (in meters);
HII, Average human influence index in grid cell;
SR, Species Richness in grid cell;
DOI: 10.5061/dryad.24c3s89/2
title: grid_cell_pcoa_scores_meta

description: CSV meta-data for file 'grid_cell_pcoa_scores.csv'. With first column indicating orignal column name and second column with a description of the column.
DOI: 10.5061/dryad.24c3s89/3
title: species_diet_pcoa_scores

description: Species average scores on the first four axis of the Principal Coordinates Analysis using their diet composition. (contains 8937 species). See data description below:
species, binomial species name of the form Genus_species;
A1, species raw score on the first axis of the trophic PCoA;
A2, species raw score on the second axis of the trophic PCoA;
A3, species raw score on the third axis of the trophic PCoA;
A4, species raw score on the fourth axis of the trophic PCoA;
DOI: 10.5061/dryad.24c3s89/4
title: species_diet_pcoa_scores_meta

description: Metadata for file 'species_diet_pcoa_scores.csv' as CSV file with first column describing original column names and second column a description of the columns.
DOI: 10.5061/dryad.24c3s89/5
title: world_bird_grid

description: World Grid used for analyses with 1° by 1° cells covering the word. ~110 km by 100 km cells. This archive contains the shapefile in WGS84 (EPSG: 4236) with grid cell identifiers, area and perimeter of each grid cell.
DOI: 10.5061/dryad.24c3s89/6
title: world_bird_grid_meta

description: Metadata as CSV file of the shapefile archive 'world_bird_grid.zip'. The first column gives original column names while the second column describes the column.
DOI: 10.5061/dryad.27tn2gs/2
title: Sealant Testing δ18O and δ13C Data

description: This file contains all of the δ18O and δ13C data sampled from modern bivalves for the sealant testing portion of this study. Data are divided into three sections (A, B, and C), where A and C are samples taken from the control areas and B are samples taken from the treated area.
DOI: 10.5061/dryad.27tn2gs/3
title: Baculites Ontogeny δ18O and δ13C Data

description: This file contains all of the ontogenetically sampled δ18O and δ13C data used to construct the isotopic profiles for each of the baculites in this study.
DOI: 10.5061/dryad.45ng8/1
title: Data of behavioural assay to the hexane extracts
DOI: 10.5061/dryad.4863215/1
title: xy_coord_csv

description: Zip file containing digitized strike trajectory data. X-Y coordinates for each strike are stored in separate .csv files.
DOI: 10.5061/dryad.4863215/2
title: trapskin_function_2017.2.16

description: R script containing a function for estimating kinematic parameters of trap-jaw ant strikes
DOI: 10.5061/dryad.4863215/3
title: mystrium_kinematics_statistics_figures

description: R script containing the analysis and figure generation of strike kinematics
DOI: 10.5061/dryad.4863215/4
title: kinematics_summary

description: Estimated kinematic parameters for all individuals. Data derived from x-y coordinate files and trapskin function.
DOI: 10.5061/dryad.54hv675/1
title: Leaf_length_width_area_measurements_revised

description: Length, width and area in cm and cm^2 for 969 grass leaves representing 206 species. This table also gives herbarium voucher information for each sample and a file name corresponding to a leaf shape file provided in a separate .zip file.
DOI: 10.5061/dryad.54hv675/2
title: Leaf_Shape_Images

description: Leaf shape images. Most of these images correspond to the leaf area, length and width table. These images lack scale and are used for shape analysis only.
DOI: 10.5061/dryad.54hv675/4
title: Poaceae_Genera_Habitat_Photosynthesis_TABLE
DOI: 10.5061/dryad.54hv675/5
title: Climate_Genus_data_ready
DOI: 10.5061/dryad.72fv8p6/1
title: supplementary_material

description: Trait measurements and additional information for each male examined in the study
DOI: 10.5061/dryad.7344f3r/1
title: qryDRYAD_DEP_DATA_2019_190218

description: Fish capture data on the Murray River by site and date
DOI: 10.5061/dryad.74pj317/2
title: TiO2 -SiO2 supported MnWOx catalysts by liquid phase deposition for low temperature NH3-SCR

description: rawdata
DOI: 10.5061/dryad.7fh3800/1
title: rajon_charlat_2019.tar
DOI: 10.5061/dryad.8s0s050/1
title: Stickleback parental data

description: All parental care data obtained during this study, including from individuals that did not experience the Odonate predator (Trt = “C”). Includes behaviors not analyzed in this paper, such as time at nest, activity, and  gluing. TT indicates “Total Time” and is presented in seconds.
DOI: 10.5061/dryad.8s0s050/2
title: Stickleback predator data

description: Data collected in relation to exposure to the Odonate predator.
DOI: 10.5061/dryad.8s0s050/3
title: Code for Stein and Bell 2019, Evolution

description: A knitted R file displaying code used for analysis of data.
DOI: 10.5061/dryad.8s715qp/1
title: PGLS analysis

description: Data files and RMarkdown Script
DOI: 10.5061/dryad.d4m3986/1
title: analysis_dataset_FINAL

description: Final analysis dataset (see README for details)
DOI: 10.5061/dryad.d4m3986/2
title: PAGetal_analysis_code_FINAL

description: Analysis code R Markdown file (see README for details).
DOI: 10.5061/dryad.d4m3986/3
title: PAGetal_analysis_code_FINAL

description: R Markdown code output file (see README for details).
DOI: 10.5061/dryad.f9m8217/1
title: NLP_Report_Process_clean

description: Python code to process raw clinical report.
DOI: 10.5061/dryad.f9m8217/2
title: NonDL_models_clean

description: Python file used to perform classification with non-RNN models.
DOI: 10.5061/dryad.f9m8217/3
title: LSTM_keras_03012018_clean

description: Python code to perform RNN models.
DOI: 10.5061/dryad.f9m8217/4
title: visualizeModels_clean

description: Python code to create visualizations.
DOI: 10.5061/dryad.gh830j7/1
title: Absolute abundance community matrix

description: Community matrix for all identification methods.
DOI: 10.5061/dryad.gh830j7/2
title: MPS raw data

description: Barcodes and primer sequences are available in the mapping file formatted for QIIME1
DOI: 10.5061/dryad.gn74mt3/1
title: Interview NASR

description: IRB-approved interview script for the North American SUDEP Registry.
DOI: 10.5061/dryad.j1v7g05/4
title: Relationship between Wear Formation and Large-particle Motion in a Pipe Bend

description: This data file contains all the chart data sources in the《Relationship between Wear Formation and Large-particle Motion in a Pipe Bend》
DOI: 10.5061/dryad.k48mr0c/3
title: PilotStudy

description: Pilot Study: raw and preprocessed data, preprocessing matlab scripts, statistical analyses R scripts
DOI: 10.5061/dryad.k48mr0c/4
title: ReplicationStudy

description: Replication Study: raw and preprocessed data, preprocessing matlab scripts, statistical analyses R scripts