cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.2v6wwpzkh
title: Datasets supporting: Acute bottlenecks to the survival of juvenile Pygoscelis penguins occur immediately after fledging

description: This data set contains a zipped file with 8 individual .csv files used to
 support the analysis of survival bottlenecks presented by Hinke et
 al.(2020), "Acute bottlenecks to the survival of juvenile Pygoscelis
 penguins occur immediately after fledging". Data include geographical
 position estimates from satellite telemetry studies on Adélie (Pygoscelis
 adeliae), chinstrap (P. antarctica), and gentoo (P. papua) penguins
 tracked from the Antarctic peninsula region, carcass counts from ship and
 beach surveys in the study region, fledgling weights, and battery voltage
 data from telemetry tags.
description: Multiple datasets are provided. Telemetry data is raw ARGOS data
 collected from Sirtrak Kiwisat K2G-72A transmitters on Adelie, gentoo, and
 chinstrap fledgling penguins. Summarized data on cumulative losses of tags
 from adult birds derive from Wildlife Computers Spot-275 transmitters.
 Historical raw data collected by field researchers include fledgling
 weights and counts of penguin carcasses observed at sea and on beaches.
 Fledgling weights were collected with spring scales immediatley prior to
 first departure of fledgling penguins from their natal colony (Adelie and
 chinstrap) or at a standard age of 85-days after hatch (gentoo). At-sea
 carcass observations were collected during standard seabird surveys while
 underway during daylight hours. Beach-cast carcasses of fledgling
 chinstraps were counted one week after the fledging period at Cape
 Shirreff, Livingston Island. Recruitment data are based from
 mark-recapture data and represent proportional returns of individuals from
 marked cohorts, as updated from a prior report
 (doi: 10.1007/s00442-007-0781-4).
description: A read me file is included with the data to identify fields,
 units, and study locations.
DOI: 10.5061/dryad.bcc2fqzb3
title: Data from: The role of behavioural flexibility in primate diversification

description: Identifying the factors that influence species diversification is
 fundamental to our understanding of the evolutionary processes underlying
 extant biodiversity. Behavioural innovation, coupled with the social
 transmission of new behaviours, has been proposed to increase rates of
 evolutionary diversification, as novel behaviours expose populations to
 new selective regimes. Thus, it is believed that behavioural flexibility
 may be important in driving evolutionary diversification across animals.
 We test this hypothesis within the primates, a taxonomic group with
 considerable among-lineage variation in both species diversity and
 behavioural flexibility. We employ a time cutoff in our phylogeny to help
 account for biases associated with recent taxonomic reclassifications and
 compare three alternative measures of diversification rate that consider
 different phylogenetic depths. We find that the presence of behavioural
 innovation and social learning are positively correlated with
 diversification rates among primate genera, but not at shallower
 phylogenetic depths. Given that we find stronger associations when
 examining older rather than more recent diversification events, we suggest
 that extinction resistance, as opposed to speciation, may be an important
 mechanism linking behavioural flexibility and primate diversification. Our
 results contrast with work linking behavioural flexibility with
 diversification of birds at various phylogenetic depths. We offer a
 possible dispersal-mediated explanation for these conflicting patterns,
 such that the influence behavioural flexibility plays in dictating
 evolutionary trajectories differs across clades. Our results suggest that
 behavioural flexibility may act through several different pathways to
 shape the evolutionary trajectories of lineages.
description: This data is for the 239 primate lineages and 60 primate genera
 used in the manuscript "The role of behavioural flexibility in
 primate diversification". Data are summarized at these taxonomic
 levels for the purposes of our analyses, and we refer others to the
 original data sources for species level data. Please
 refer to the "ReadMe" file.
DOI: 10.5061/dryad.z612jm69r
title: Supplemental tables for: A periventricular gradient of innate immune cell activation in Multiple Sclerosis

description: Objectives: To explore in-vivo innate immune
 cell activation as a function of the distance from ventricular CSF in
 patients with Multiple Sclerosis (MS) using [18F]-DPA714 PET, and to
 investigate its relationship with periventricular microstructural damage,
 evaluated by magnetization transfer ratio (MTR), and with trajectories of
 disability worsening. Methods: Thirty-seven MS patients and
 nineteen healthy controls underwent MRI and [18F]-DPA714 TSPO
 dynamic PET, from which individual maps of voxels characterized by innate
 immune cell activation (DPA+) were generated. White matter (WM) was
 divided in 3mm-thick concentric rings radiating from the ventricular
 surface toward the cortex, and the percentage of DPA+ voxels and mean MTR
 were extracted from each ring. Two-year trajectories of disability
 worsening were collected to identify patients with and without recent
 disability worsening. Results: The percentage of DPA+ voxels was
 higher in patients compared to controls in the periventricular WM
 (p=6.10e-6), and declined with increasing distance from ventricular
 surface, with a steeper gradient in patients compared to controls
 (p=0.001). This gradient was found both in periventricular lesions and
 normal-appearing WM. In the total WM, it correlated with a gradient of
 microstructural tissue damage measured by MTR (rs=-0.65,
 p=1.0e-3). When compared to clinically stable
 patients, patients with disability worsening were
 characterized by a higher percentage of DPA+ voxels in
 the periventricular normal-appearing WM (p=0.025).
 Conclusions: Our results demonstrate that in MS the innate immune
 cell activation predominates in periventricular regions and associates
 with microstructural damage and disability worsening. This could result
 from the diffusion of pro-inflammatory CSF-derived factors into
 surrounding tissues.
description: Thirty-seven MS patients and nineteen healthy controls underwent MRI and [18F]-DPA714 TSPO dynamic PET, from which individual maps of voxels characterized by innate immune cell activation (DPA+) were generated. White matter (WM) was divided in 3mm-thick concentric rings radiating from the ventricular surface toward the cortex, and the percentage of DPA+ voxels and mean MTR were extracted from each ring. Two-year trajectories of disability worsening were collected to identify patients with and without recent disability worsening.
description: Supplemental table 1 and 2
DOI: 10.5061/dryad.bzkh18971
title: Going with the flow: corals in high-flow environments can beat the heat

description: Coral reefs are experiencing unprecedented declines in health on a global
 scale leading to severe reductions in coral cover. One major cause of this
 decline is increasing sea surface temperature. However, conspecific
 colonies separated by even small spatial distances appear to show varying
 responses to this global stressor. One factor contributing to differential
 responses to heat stress is variability in the coral’s micro-environment,
 such as the amount of water flow a coral experiences. High flow provides
 corals with a variety of health benefits, including heat stress
 mitigation. Here, we investigate how water flow affects coral gene
 expression and provides resilience to increasing temperatures. We examined
 host and photosymbiont gene expression of Acropora cf. pulchra colonies in
 discrete in situ flow environments during a natural bleaching event. In
 addition, we conducted controlled ex situ tank experiments where we
 exposed A. cf. pulchra to different flow regimes and acute heat stress.
 Notably, we observed distinct flow-driven transcriptomic signatures
 related to energy expenditure, growth, heterotrophy and a healthy coral
 host-photosymbiont relationship. We also observed disparate transcriptomic
 responses during bleaching recovery between the high- and low-flow sites.
 Additionally, corals exposed to high flow showed “frontloading” of
 specific heat-stress related genes such as heat shock proteins,
 antioxidant enzymes, genes involved in apoptosis regulation, innate
 immunity, and cell adhesion. We posit that frontloading is a result of
 increased oxidative metabolism generated by the increased water movement.
 Gene frontloading may at least partially explain the observation that
 colonies in high-flow environments show higher survival and/or faster
 recovery in response to bleaching events.
DOI: 10.5061/dryad.9ghx3ffg0
title: Overexpression of an ALS-associated FUS mutation in C. elegans disrupts NMJ morphology and leads to defective neuromuscular transmission

description: The amyotrophic lateral sclerosis (ALS) neurodegenerative disorder has
 been associated with multiple genetic lesions, including mutations in the
 gene for FUS (Fused in Sarcoma), a nuclear-localized RNA/DNA-binding
 protein. Neuronal expression of the pathological form of FUS proteins in
 C. elegans results in mislocalization and aggregation of FUS in the
 cytoplasm, and leads to impairment of motility. However, the mechanisms by
 which the mutant FUS disrupts neuronal health and function remain unclear.
 Here we investigated the impact of ALS-associated FUS on motor neuron
 health using correlative light and electron microscopy, electron
 tomography, and electrophysiology. We show that ectopic expression of
 wild-type or ALS-associated human FUS impairs synaptic vesicle docking at
 neuromuscular junctions. ALS-associated FUS led to the emergence of a
 population of large, electron-dense, and filament-filled endosomes.
 Electrophysiological recording revealed reduced transmission from motor
 neurons to muscles. Together, these results suggest a pathological effect
 of ALS-causing FUS at synaptic structure and function organization.
description: Please refer to the main publication and the accompanying README
 file for information on dataset generation and processing.
description: To open and view the tomograms and 3D models (.rec and .mod
 files) please use the 3dmod software from the IMOD package. It can be
 downloaded for free here: https://bio3d.colorado.edu/imod/
 Refer to the accompanying README file and the main publication to
 understand and use this dataset.
DOI: 10.82294/dvnskvgxm
title: Datos consolidados de eje medular. Territorio: Guainía. Eje medular: Agenciamiento. Sector: Cultura, Educación, Total. Año: 2025

description: Datos consolidados de las observaciones semiestructuradas sobre el eje medular de agenciamiento, realizadas en el departamento de Guainía. Este dataset reúne los archivos correspondientes a los educadores artísticos del sector Educación y del sector Cultura, así como un archivo consolidado que integra la información de ambos sectores.
DOI: 10.5061/dryad.q2bvq83hg
title: Data from: Hybridization alters growth and migratory life history expression of native trout

description: Human-mediated hybridization threatens many native species, but the
 effects of introgressive hybridization on life history expression are
 rarely quantified, especially in vertebrates. We quantified the effects of
 non-native rainbow trout admixture on important life history traits
 including growth and partial migration behavior in three populations of
 westslope cutthroat trout over five years. Rainbow trout admixture was
 associated with increased summer growth rates in all populations, and
 decreased spring growth rates in two populations with cooler spring
 temperatures. These results indicate that non-native admixture may
 increase growth under warmer conditions, but cutthroat trout have higher
 growth rates during cooler periods. Non-native admixture consistently
 increased expression of migratory behavior, suggesting that there is a
 genomic basis for life history differences between these species. Our
 results show that effects of interspecific hybridization on fitness traits
 can be the product of genotype-by-environment interactions even when there
 are minor differences in environmental optima between hybridizing species.
 These results also indicate that while environmentally mediated traits
 like growth may play a role in population-level consequences of admixture,
 strong genetic influences on migratory life history differences between
 these species likely explains the continued spread of non-native
 hybridization at the landscape-level, despite selection against hybrids at
 the population-level.
description: In the growth analyses, data were collected with backpack
 electrofishing in July and October of each year. For the migration
 analysis, we used a combination of fish weirs, backpack electrofishing,
 and fixed PIT-tag arrays. The environmental data were collected with HOBO
 dataloggers and discharge measurements. See Strait et al. 2021 for
 detailed methods.
description: The following csv files contain all the information necessary to
 run the linear regression models presented in Strait et al.
 2021. In the Growth file, every row of these files
 represent a unique individual and growth rate, and the columns include all
 necessary response variables and covariates used in the analyses. See the
 README document for definitions of each column in each data
 file.  The Migration file contains the data to run the
 migration analysis. Each row represents a unique individual and migration
 event, and the columns include all th necessary response variables and
 covariates used in the analysis. See the README documnet for definitionas
 of each column in the data file.
DOI: 10.5061/dryad.crjdfn32x
title: Moose selection for resource stoichiometry

description: Herbivores consider the variation of forage qualities (nutritional content
 and digestibility) as well as quantities (biomass) when foraging. Such
 selection patterns may change based on the scale of foraging, particularly
 in the case of ungulates that forage at many scales. To test selection for
 quality and quantity in free-ranging herbivores across scales, however, we
 must first develop landscape-wide quantitative estimates of both forage
 quantity and quality. Stoichiometric distribution models (StDMs) bring
 opportunity to address this because they predict the elemental measures
 and stoichiometry of resources at landscape extents. Here, we use StDMs to
 predict elemental measures of understory white birch quality (% nitrogen)
 and quantity (g carbon/m2) across two boreal landscapes. We analyzed GPS
 collared moose (n = 14) selection for forage quantity and quality at the
 landscape, home range, and patch extents using both individual and pooled
 resource selection analyses. We predicted that as the scale of resource
 selection decreased from the landscape to the patch, selection for white
 birch quantity would decrease and selection for quality would increase.
 Counter to our prediction, pooled-models showed selection for our
 estimates of quantity and quality to be neutral with low explanatory power
 and no scalar trends. At the individual-level, however, we found evidence
 for quality and quantity trade-offs, most notably at the home range scale
 where resource selection models explain the largest amount of variation in
 selection. Furthermore, individuals did not follow the same trade-off
 tactic, with some preferring forage quantity over quality and vice-versa.
 Such individual trade-offs show that moose may be flexible in attaining a
 limiting nutrient. Our findings suggest that herbivores may respond to
 forage elemental compositions and quantities, giving tools like StDMs
 merit towards animal ecology applications. The integration of StDMs and
 animal movement data represents a promising avenue for progress in the
 field of zoogeochemistry.
description: The moose GPS data has already been cleaned and prepared for
 resource selection analyses. Resource stoichiometry landscapes are
 provided. We provide code on GitHub for extracting used and available
 points for three scales of resource selection: the landscape (resource
 selection function; RSF), home range (RSF), and patch level (integrated
 step selection analysis; iSSA). We also provide code on GitHub for running
 models at all scales and outputing selection coefficients into a table
 (leads to output folder).
DOI: 10.5061/dryad.z8w9ghx9m
title: Improved antibacterial activity of hemp fibres by covalent grafting of quaternary ammonium groups

description: In this study, novel antibacterial hemp fibres grafted with
 quaternary ammonium groups, named
 HF-GTA, were prepared by alkalisation,
 oxidation, amination, and quaternisation multistage reactions.
 The chemical structure and micromorphology of the fibres were
 characterised by Fourier-transform infrared
 spectroscopy, scanning electron microscopy, X-ray
 photoelectron spectroscopy, thermogravimetric analysis, and X-ray
 diffraction. The grafting and reaction mechanisms were proved to
 be successful, which indicated that the grafting reaction primarily
 occurred on the
 hydroxyl groups of cellulose and
 hemicellulose in the hemp
 fibres, where they retained good
 fibrous morphology, thermal stability
 and hygroscopicity. The antibacterial activity
 of HF-GTA exhibited the best antibacterial activity,
 where the antibacterial ratios against E. coli and S.
 aureus were 95.41% and 99.64%, respectively. Even after 30 times
 of washing, the antibacterial activity was retained at
 89.78% and 91.12%, indicating that HF-GTA was endowed
 with good washing resistance. The antibacterial mechanism occurred because
 the electrostatic reaction reduced the electrochemical potential on the
 cell membrane, leading to the release of cytoplasmic substances and the
 dissolution of cells, thereby producing antibacterial activity. It would
 be significantly important to guarantee textile quality and prevent
 disease transmission.
DOI: 10.5068/d14370
title: Ancient balancing selection maintains incompatible versions of the galactose pathway in yeast (Figure creation)

description: Metabolic pathways differ between species, but are expected to be similar
 within a species. We discovered two functional, incompatible versions of
 the galactose pathway in S. cerevisiae. We identified a 3-locus genetic
 interaction for growth in galactose, and used precisely engineered alleles
 to show that is arises from variation in the metabolic genes GAL2,
 GAL1/10/7, and PGM1, and that the reference allele of PGM1 is incompatible
 with the alternative alleles of the other genes. Multi-locus balancing
 selection has maintained the two incompatible versions of the pathway for
 millions of years. Strains with alternative alleles are found primarily in
 galactose-rich dairy environments, and they grow faster in galactose, but
 slower in glucose, revealing a tradeoff on which balancing selection may
 have acted.
description: This dataset contains all the files necessary to recreate the
 figures in Boocock et al "Ancient balancing selection maintains
 incompatible versions of the galactose pathway in yeast".
DOI: 10.5061/dryad.3xsj3txf7
title: The evolution of phenotypic novelty through the genetic assimilation of broken symmetry

description: Most animals are symmetrical; however, widespread and impressive cases
 occur where symmetry has been broken. Breaks in symmetry can occur as
 anti-symmetry, where 50% of the population have the left side enlarged and
 50% the right, or through directional asymmetry where the entire
 population is biased either to the left or the right. Such broken symmetry
 represents a novel phenotype that is challenging to explain from an
 evolutionary perspective, given that it has ultimately evolved from a
 symmetrical ancestor. Here, we use artificial selection to test the
 hypothesis that anti-symmetry can evolve through the genetic assimilation
 of a developmental error that occurs in the production of an
 environmentally cued threshold trait. We find that anti-symmetry in the
 legs of the acarid mite, Rhizoglyphus echinopus, is heritable and that we
 are able to increase the frequency of the anti-symmetrical males through
 artificial selection. We find no evidence that the developmental
 instability of anti-symmetrical males is associated with negative fitness
 consequences in terms of larval viability and inbreeding depression. Our
 study provides empirical support for the notion that developmental errors
 in the production of threshold traits can be the genesis for the
 subsequent genetic assimilation of the phenotypic novelty that is broken
 symmetry.
description: The data are from an artificial selection experiment on the
 asymmetry.
DOI: 10.5061/dryad.djh9w0vz5
title: Olfactory perception of herbivore‐induced plant volatiles elicits counter‐defenses in larvae of the tobacco cutworm

description: Herbivore attack leads to increased emission of herbivore-induced plant
 volatiles (HIPVs) that protect plants by eliciting direct anti-herbivore
 defenses and indirect defenses via attraction of natural enemies. Whether
 herbivorous insects can develop counter-defenses against host plants in
 response to HIPVs is largely unexplored. Using a directed airflow
 apparatus, we investigated the influence of HIPVs emitted from tobacco
 cutworm (Spodoptera litura)-infested tomatoes on larval performance on
 herbivore-pretreated tomatoes vs. untreated tomatoes or on trypsin
 inhibitor-amended artificial diets vs. unamended diets, as well as the
 transcriptional responses of HIPV-exposed larvae. S. litura larval feeding
 on tomato plants led to increased emission of HIPVs. The HIPV-exposed
 larvae showed significantly increased survival rates and weight gains on
 both herbivore-pretreated tomato leaves and trypsin inhibitor-supplemented
 diet but not on untreated tomato leaves and control diets, nor when they
 had been exposed to HIPVs emitted from spr8 mutant plants which barely
 emit terpenes. These results suggest that larval exposure to HIPVs from
 wild-type plants enhanced their ability to cope with plant induced
 defenses. The latter is supported by the observation that larval exposure
 to HIPVs led to enhanced transcript levels of eight genes encoding cuticle
 proteins, and seven genes encoding cytochrome P450s, an important class of
 detoxification enzymes. Our studies revealed a mechanism by which larval
 olfactory perception of HIPVs elicits counter-defenses that enhance the
 ability of insect herbivores to withstand host plant chemical defenses.
DOI: 10.5061/dryad.z612jm69s
title: Moose occurrence data in Bohemian Forest Ecosystem

description: This dataset contains all gathered spatial data for moose occurrence in
 our study area (see manuscript). In the table you can find these
 attributes: country of the occurrence, data quality according to SCALP
 classification, details about occurrence, coordinates for used S-JTSK
 (5514) reference system, locality and year of the record.
description: This dataset was prepared from many others for our study area.
 The aim was to gather all available spatial data for moose population in
 this region. Data on moose occurrence were gathered from local
 stakeholders, regional administrations, hunters, scientists, the public
 and through an extensive literature search of zoological databases
 (GeneDBase, zoological records, Web of Science, Czech National Database of
 Fauna-Flora Records [NDOP]), questionnaires filled out by hunting
 organisations for the Ministry of Environment of the Czech Republic, local
 scientific and hunters’ journals and web pages.