cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7603790.v2
title: Processed_16s_output

description: Count table and taxonomy file for 16s sequencing of a seasonal study looking at microbial responses to warmer surface waters on the Southern California coast. Processing was done using DADA2 (1.6.0), and each ASV was assigned taxonomy using the Silva 132 release for all Bacteria. Phytoref, a curated database of phytoplankton plastid 16s sequences, was used on all ASVs identified as "chloroplasts" by Silva to assign taxonomy.
DOI: 10.6084/m9.figshare.22060427.v1
title: Raman spectroscopy data

description: This dataset comprises data summaries for both the interior and exterior Raman spectroscopy data. It also has all of the raw data, fitted files, and data from fitting.
DOI: 10.6084/m9.figshare.2182720.v1
title: Statistics Annex

description: Statistical complement to methods described in Frixione et al. Assessing individual research in Mexico PLOS ONE 2016
DOI: 10.17632/kfdfv9tmxg
title: Data for: Dynamic capital structure under changing market conditions in the oil industry: An empirical investigation

description: Data correspond to variables constructed for analyzing capital structure models within the oil industry. Raw data were retrieved from DataStream.
DOI: 10.6084/m9.figshare.5498080.v1
title: Dataset 2: Secretion of H3 clade cross-reactive antibodies by B cells stimulated with inactivated A/Vic11

description: Purified B cells were obtained by negative selection and stimulated with CpG ODN alone or together with A/Vic11 or A/SH13 for 6 days. (A) ASCs for H3 HA were examined by ELISpot assay. H3-binding antibodies in supernatants of activated B cells were monitored using beads bound with HA from H3N2 strains. (B) A/Vic11-specific IgG. Each symbol represents an individual donor. One-way AVONA was used to evaluate the difference among different groups (* P&lt;0.05; ** P&lt;0.01). (B) Results were verified by ELISpot after stimulation with A/Vic11. The values represent the number of anti-HA IgG specific antibody-secreting cells in 1.25 x 10^5 stimulated B cells/donor. (C) Correlation between anti-A/Vic11 IgG levels in plasma and secretion of A/Vic11-specific IgG by activated B cells. (D) Antibodies binding to H3 clades. (E) Comparison of A/Vic11-specific IgG and A/Swi13-reactive IgG.
DOI: 10.6084/m9.figshare.10099394.v1
title: Reaction time data for CamoGAN experiment 1

description: <b>Column descriptions</b><b><br></b><b>participant_id</b>Participant identifier (1 to 45).<br><b>gan_id</b>Identifier of the GAN the target was extracted from (1 to 10).<br><b>treatment</b>500, 2500, 5000, 7500 and 10000 stand for the number of training iterations GANs were trained for when the target was extracted; F is for the Fourier and A is for the Average control conditions.<br><b>strain</b>The strain that was presented to a participant. 15 strains were extracted from each GAN. Strains with the same identifier, but different GAN origin are independent.<br><b>reaction_time</b>Reaction time of participants in seconds.<br><b>status</b>0 - target was found and clicked on1 - participant clicked, but not on the target2 - timeout (10 seconds)
DOI: 10.6084/m9.figshare.8980103.v1
title: grid.189504.1

description: Network Graphs for institution grid.189504.1 created for "What Does a University Look Like?" poster
DOI: 10.6084/m9.figshare.28239278.v1
title: Supplementary Material for: Sarcopenia is poorly documented in geriatric rehabilitation inpatients: REStORing health of acutely unwell adulTs (RESORT)

description: Introduction: Sarcopenia is highly prevalent in older inpatients. However, it is unclear if sarcopenia is documented routinely in geriatric rehabilitation. This study aimed to investigate the documentation of sarcopenia in medical records among geriatric rehabilitation patients.
Methods: Geriatric rehabilitation inpatients in a statewide hospital in Victoria, Australia were included. Patient characteristics, muscle measurements, and medical records at admission and discharge were collected. Sarcopenia was defined using the European Working Group on Sarcopenia in Older People 2 (EWGSOP2). Patient characteristics were compared between the groups with documented and non-documented sarcopenia using the Wilcoxon rank-sum or chi-square test.
Results: Of 1,890 geriatric rehabilitation inpatients (aged 83.4 [IQR 77.6-88.4] years, 56.3% female), muscle measurements were available in 1,334 patients at admission. The prevalence of sarcopenia was 20.8% (n=278). Sarcopenia was documented in 68 out of 1890 patients; 23 of them did not have muscle mass or muscle strength measured. Forty-five out of 1334 patients with muscle measurements available were documented with sarcopenia either at discharge from acute admissions (n=9), on rehabilitation admission (n=25), orand at discharge from rehabilitation (n=26). Of these 45 patients, eight patients had sarcopenia following the EWGSOP2 criteria. Compared with patients without sarcopenia documented, patients documented with sarcopenia had lower body mass index (BMI) and sarcopenia screening (SARC-F) scores, higher Clinical Frailty Scale (CFS) scores and were likely to come from nursing homes.
Conclusions: Documentation of sarcopenia was lower than the prevalence of sarcopenia in geriatric rehabilitation inpatients. Sarcopenia was incorrectly documented as data on muscle measurement were missing to define sarcopenia. Practitioners likely used clinical impressions to document sarcopenia, rather than the formal diagnostic criteria.
DOI: 10.6084/m9.figshare.17712373.v1
title: Identification of broad-leaf trees using deep learning based on field photographs of multiple leaves

description: We used deep learning to identify broad-leaved tree species based on photographs taken outdoors that included multiple leaves. We took 300 photographs of each of 12 broad-leaved tree species, and used these to produce 43,200 256 × 256 pixels images. We used Caffe as the deep learning framework, and AlexNet and GoogLeNet as the deep learning algorithms. We trained four learning models from a combination of test data ratios, with/without data augmentation, and assessed the classification accuracy based on the ratio of correct classifications to total classifications (“correct ratio”). We divided leaf images into 10 equal sets and conducted 10 iterations without duplication. The results indicated that the highest average correct ratio for the 10 sets was 97.0% in GoogLeNet after 200 epochs. GoogLeNet showed a higher average correct ratio than AlexNet for all of the learning models. A higher proportion of test data resulted in lower average correct ratios without data augmentation. However, the correct ratio tended to improve with data augmentation. Pairs of mutually misclassified species were not necessarily misidentified within categories based on morphological similarity.
DOI: 10.6084/m9.figshare.7698239.v1
title: Melanoma-to-organ ratios of 111In-labeled 3-arm and 4-arm DOTA-alpa-MSH in B16-F1-bearing mice

description: Melanoma-to-organ ratios of <sup>111</sup>In-labeled 3-arm and 4-arm DOTA-a-MSH in B16-F1-bearing mice
DOI: 10.6084/m9.figshare.13379216.v1
title: Supplementary Material for: The Association between Antidiabetic Agents and Leukocyte Telomere Length in the Novel Classification of Type 2 Diabetes Mellitus

description: <b><i>Aims:</i></b> This study aimed to explore the new role of telomere length (TL) in the novel classification of type 2 diabetes mellitus (T2DM) patients driven by cluster analysis. <b><i>Materials and Methods:</i></b> A total of 541 T2DM patients were divided into 4 subgroups by <i>k</i>-means analysis: mild obesity-related diabetes (MOD), severe insulin-deficient diabetes (SIDD), severe insulin-resistant diabetes (SIRD), and mild age-related diabetes (MARD). After patients with insufficient data were excluded, further analysis was conducted on 246 T2DM patients. The TL was detected using telomere restriction fragment, and the related diabetic indexes were also measured by clinical standard procedures. <b><i>Results:</i></b> The MARD group had significantly shorter TLs than the MOD and SIDD groups. Then, we subdivided all T2DM patients into the MARD and NONMARD groups, which included the MOD, SIDD, and SIRD groups. The TLs of the MARD group, associated with age, were discovered to be significantly shorter than those of the NONMARD group (<i>p</i> = 0.0012), and this difference in TL disappeared after metformin (<i>p</i> = 0.880) and acarbose treatment (<i>p</i> = 0.058). The linear analysis showed that metformin can more obviously reduce telomere shortening in the MARD group (<i>r</i> = 0.030, 95% CI 0.010–0.051,<i> p</i> = 0.004), and acarbose can more apparently promote telomere attrition in the SIRD group (<i>r</i> = –0.069, 95% CI –0.100 to –0.039, <i>p</i>&lt; 0.001) compared with other T2DM patients after adjusting for age and gender. <b><i>Conclusions:</i></b> The MARD group was found to have shorter TLs and benefit more from the antiaging effect of metformin than other T2DM. Shorter TLs were observed in the SIRD group after acarbose use.
DOI: 10.6084/m9.figshare.24056211.v1
title: Development set

description: The development set of AgCNER for validation,which contains 5964 sentences.
DOI: 10.17632/6jpyk7pzpv
title: Instances for the Multi-Stage Two-Dimensional Cutting Stock Problem with Usable Leftovers and Uncertainty in Demand

description: Full description of instances for the Multi-Stage Two-Dimensional Cutting Stock Problem with Usable Leftovers and Uncertainty in Demand. 

Sixteen classes of instances were defined with 'S' = 2 types of standard plates and varying the number of types of leftovers in stock ('R' = 1 and 2). The number of types of items varied with 'I' = 3, 5, 8, and 10, and their dimensions were generated according to the dimensions of the plates and leftovers in stock. 

Six scenario trees were used to represent the demand for items in the multi-stage approach. Each tree is identified according to the format 'T'/'B'/'Ξ', where 'T' is the number of stages, 'B' is the number of branches, and 'Ξ' is the number of scenarios.

For each pair class/tree, 10 instances were generated.
DOI: 10.17632/8gyk38b7t2
title: Data for: Improving Techniques to Study Equine Cervical Mucociliary Clearance

description: Note: Dates displayed on video recordings (May 2016) do not match when the study was performed (July, August 2017). extendedview_appendedvideo.mp4 This is an extended video segment which includes all of the particles deposited on the cervix of the mare in vivo (1-5 um green microspheres, 70 um green microspheres, 50 um bichromal microspheres, and carbon). At 45 s into the video movement represented in Figure 5 can be observed. The particle is in the top right of the screen, just below the magnification marker. The particle moves abruptly to the right, but with a slight back ward (to the left) movement of the top surface of the microsphere. This movement was predicted prior to the study as evidence supportive of mucociliary propulsion from below, but in this video recording is too limited to constitute proof. Erythrocytes moving through capillaries can be seen, from 59 s, and with most clarity at 1 m in 20 s. Figure_4_appendedvideo Shows a flash of light from the particle circled in Figure 4. This is interpreted as the particle distorting the meniscus, possibly as a result of rotation. Figure_7_appendedvideo Fluid movement can be seen through small vessels in the upper left quadrant of the black box. Figure_8_appendedvideo Particles observed within the two boxes may be seen to be progressing independently. The green polyethylene microspheres (blue box in Figure 5) move convincingly to the lower right of the field. The carbon particles in the red box in Figure 5 are static or moving very slowly to the upper left. Note: Dates displayed on video recordings (May 2016) do not match when the study was performed (July, August 2017).
DOI: 10.6084/m9.figshare.9334793.v1
title: Datasets for the Role of Financial Investors on Commodity Futures Risk Premium

description: The datasets for the Role of Financial Investors on Commodity Futures Risk Premium are weekly datasets for the period from 1995 to 2015 for three commodities in the energy market: crude oil (WTI), heating oil, and natural gas. These datasets contain futures prices for different maturities, open interest positions for each commodity (long and short open interest positions), and S&P 500 composite index. The selected commodities are traded on the New York Mercantile Exchange (NYMEX). The data comes from the Thomson Reuters Datastream and from the Commodity Futures Trading Commission (CFTC).<br>
DOI: 10.6084/m9.figshare.27159075.v2
title: Dataset to : Modeling productivity of silver birch (<i>Betula pendula</i> Roth.) combining phytocentric and geocentric approaches in northwestern Europe

description: In this study, we were interested in assessing the potential productivity of a forest species that has so far been neglected by foresters in Western Europe: the silver birch. To achieve this, we combined two approaches: (i) phytocentric and (ii) geocentric. The phytocentric approach aimed at developing the top-height growth curves of birch based on stem analyses, in order to estimate the site index (i.e. the dominant height at a reference age). The geocentric approach aimed at modeling the site index using environmental variables, in order to identify the key factors driving birch growth and to create productivity maps.
DOI: 10.6084/m9.figshare.5125054.v1
title: Supplementary Material for: The Role of Innate Immunity in Promoting SaeR/S-Mediated Virulence in Staphylococcus aureus

description: The ability of <i>Staphylococcus aureus</i> to infect tissues is dependent on precise control of virulence through gene-regulatory systems. While the SaeR/S two-component system has been shown to be a major regulator of <i>S. aureus</i> virulence, the influence of the host environment on SaeR/S-regulated genes (<i>saeR/S </i>targets) remains incompletely defined. Using QuantiGene 2.0 transcriptional assays, we examined expression of genes with the SaeR binding site in USA300 exposed to human and mouse neutrophils and host-derived peptides and during subcutaneous skin infection. We found that only some of the <i>saeR/S </i>targets, as opposed to the entire SaeR/S virulon, were activated within 5 and 10 min of interacting with human neutrophils as well as α-defensin. Furthermore, mouse neutrophils promoted transcription of <i>saeR/S</i> targets despite lacking α-defensin, and the murine skin environment elicited a distinctive expression profile of <i>saeR/S</i> targets. These findings indicate that <i>saeR/S</i>-mediated transcription is unique to and dependent on specific host stimuli. By using isogenic USA300Δ<i>saeR/S</i> and USA300Δ<i>agr</i> knockout strains, we also determined that SaeR/S is the major regulator of virulence factors, while Agr, a quorum-sensing two-component system, has moderate influence on transcription of the <i>saeR/S </i>targets under the tested physiological conditions.
DOI: 10.6084/m9.figshare.28741742.v2
title: RC beam repair using conventional cementitious mortar

description: The raw experimental data supporting the findings of this study are available on Figshare, and the data are also available from the corresponding author upon reasonable request.
DOI: 10.17632/kzc5bt9578
title: Augmented Reality and Its Relationship to Artificial Intelligence in Historical Studies

description: Augmented reality is one of the most prominent modern smart systems that emerged from the contemporary digital revolution. In our research, we will discuss the important data of this technology and its relationship to historical studies.The augmented reality system is nothing but a smart system supported by artificial intelligence. Here we will briefly explain how this technology works with historical studies in a simplified scientific manner enhanced with graphs and drawings.
DOI: 10.6084/m9.figshare.11380569.v1
title: Hypothyroidism during pregnancy

description: 怀孕期间甲状腺功能低下
DOI: 10.17632/5khzv6xhy3
title: EMG_SoccerPlayers_BiomecanicaUPM
DOI: 10.6084/m9.figshare.14669433.v1
title: sixTissueOctantBrainSegmentationWithPriors1.h5

description: Six tissue segmentation weights with a cerebellum spatial prior
DOI: 10.6084/m9.figshare.28594298.v1
title: Supplementary Material for: Development and validation of a clinical prediction model for stages of acute kidney injury in critically ill patients

description: Introduction: Among critically ill patients, acute kidney injury (AKI) has a high incidence and leads to poor prognosis. As AKI is often only detected well after onset, early risk stratification is crucial. This study aimed to develop and internally validate the first clinical prediction model for different stages of AKI in critically ill adults.

Methods: We utilized data from the Simple Intensive Care Studies II (SICS-II), a prospective cohort study at the University Medical Center Groningen, the Netherlands. The prognostic outcome was the highest KDIGO-based stage of AKI within the first 7 days of ICU stay. Candidate predictors included fifty-nine readily available variables in critical care. Least absolute shrinkage and selection operator (LASSO) and proportional odds logistic regression were used for variable selection and model estimation, respectively. Receiver operating characteristic (ROC) curve, calibration plot, and decision curve analysis were applied to evaluate model performance and clinical usefulness.

Results: Of the SICS-II cohort, 976 patients were eligible for our analyses (median [IQR] age 64 [52-72] years, 38% female). Within 7 days after ICU admission, 29%, 23%, and 14% of patients progressed to their highest severity of AKI at stages 1, 2, and 3, respectively. We derived a 15-variable model for predicting this maximum ordinal outcome with an area under the ROC curve of 0.76 (95% CI, 0.74-0.78) in bootstrap validation. The model showed good calibration and improved net benefit in decision curve analysis over a range of clinically plausible thresholds.

Conclusion: Using readily available predictors in the ICU setting, we could develop a prediction model for different stages of AKI with good performance and promising clinical usefulness. Our findings serve as an initial step towards applying a valid and timely prediction model for AKI severity, possibly helping to limit morbidity and improve patient outcomes.
DOI: 10.6084/m9.figshare.704745.v1
title: Under and overfitting data

description: My attempt to make a simple but evocative figure to explain under and overfitting.
DOI: 10.6084/m9.figshare.1611142.v1
title: Pediatric Small Bowel Syndrome 16S RNA Sequencing Dataset

description: 16S rRNA Sequencing data on fecal specimens collected from pediatric healthy controls (n=3, H1-H3) and pediatric patients with small bowel syndrome (n=8, SBS1-8).
DOI: 10.17632/c3gcmsm7fz
title: An Examination of the Meaning, Types, and Nature of Tenancy under the Nigerian Law

description: The concept of tenancy is widely used in Nigeria because a vast majority of Nigerians, occupying about 53% of the Nigerian population, live in urban areas. Out of this population, 85% lived in rented accommodations, devoting a large cent of their income to rent in houses owned by landlords to whom they pay rent on a monthly, quarterly, six-monthly, or yearly basis. This proves that tenancy agreements are widely used and still prevalent in today's Nigeria. Therefore, this work aims to briefly discuss the meaning, types, and nature of tenancy in Nigeria with a specific focus on the trends of the law on the subject matter. In undertaking this research, a doctrinal research methodology was employed. In essence, the study relied heavily on library materials to obtain information from both primary and secondary sources, such as statute books, textbooks, journal articles written by various legal scholars, internet sources, dictionaries, and judgments of the courts. The research observed that there is no uniform law regulating tenant/landlord relationships in Nigeria; as such, states adopt the most suitable laws to govern their jurisdictions. Besides that, most tenancy relationships are created/ entered into without resorting to the available laws. Again, there have been conflicting views on the types of tenancy by both the court and the academics. The worst is that there has not been any legislative pronouncement to settle the issue. To this end, the research recommended a total enforcement of the land tenure laws, set minimum structure for rental collection, and ensure maximum supervision of tenancy contracts.
DOI: 10.6084/m9.figshare.13102532.v1
title: OD9 dataset part 15/28

description: 435 032 nwchem logfiles calculated thanks to the quchempedia BOINC project.DFT calculations (B3LYP / 321G)The first 184 158 molecules corresond to the recalculation of QM9 and PC9. The others are newly generated molecules with the EvoMol software.Beware the concaneted tar file is 141GB of compressed files.<br>
DOI: 10.6084/m9.figshare.15218958.v2
title: A FAIR approach to detect and share PFAS hot-spot areas and water systems in Kentucky

description: This repository consists of different data that can be used to make layers for different maps in ArcGIS Online. It follow the Findable, Accessible, Interoperable, and Reusable(FAIR) approach so that it can be useful to other stakeholders.
DOI: 10.17632/zs55rrrvzw
title: Supplementary Data: 21st Century climate change impacts on key properties of a large-scale renewable-based electricity system

description: See the README.pdf file
DOI: 10.6084/m9.figshare.7562975.v1
title: resting-state brain data for network analyses.rar

description: We provided the correlation matrix of resting state brain data for for network analyses. Among those, CCH001 to CCH032 belong to the Chinese calligraphic handwriting group, the CON001-CON028 and the N002-N0149 belong to the control group.
DOI: 10.15468/dl.zjrqqz
title: Occurrence Download

description: A dataset containing 2028 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Pandemis heparana (Denis & Schiffermüller), 1775"
 ]
}

 The dataset includes 2028 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009424-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17633/rd.brunel.8053163.v1
title: Portable compressed binary tCONCOORD trajectory file - 3KK8 A d

description: XTC trajectory
DOI: 10.17632/38jtn4nzs6
title: Microscopic Images of Parasites Species

description: Here, we introduce a dataset consisting of 34,298 microscopic images of multiple parasites (Plasmodium, Toxoplasma, Babesia, Leishmania, Trypanosome, Trichomonad) and host cells (Red blood cell, and Leukocyte) under 400X or 1000X magnification. In detail, this parasite dataset includes 843 images of Plasmodium and 3,758 images of T.gondii at 400X, and 2,933 images of Toxoplasma, 1,173 images of Babesia, 2,701 images of Leishmania, 2,385 images of Trypanosome, and 10,134 images of Trichomonad at 1000X. Besides, this dataset also contains 8,995 images of Red blood cells and 461 images of Leukocyte at 1000X, and 915 images of Leukocyte captured at 400X.