cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/jbv3v2
title: Description of Lepthyphantes rossitsae sp. n. from Turkey (Arachnida: Araneae: Linyphiidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Dimitrov, Dragomir (2018): Description of Lepthyphantes rossitsae sp. n. from Turkey (Arachnida: Araneae: Linyphiidae). Revue suisse de Zoologie 125 (2): 277-281, DOI: 10.5281/zenodo.1414223
DOI: 10.15468/y3j993
title: Annotated and updated checklist of marine crabs (Decapoda: Brachyura) of Mozambique supported by morphological and molecular data from shelf and slope species of the “ MOZAMBIQUE ” surveys

description: This dataset contains the digitized treatments in Plazi based on the original journal article Muñoz, Isabel, García-Isarch, Eva, Cuesta, Jose A. (2021): Annotated and updated checklist of marine crabs (Decapoda: Brachyura) of Mozambique supported by morphological and molecular data from shelf and slope species of the “ MOZAMBIQUE ” surveys. Zootaxa 5056 (1): 1-67, DOI: https://doi.org/10.11646/zootaxa.5056.1.1
DOI: 10.15468/yra744
title: A new genus and three new species of Agraeciini (Orthoptera: Tettigoniidae: Conocephalinae) from the Brazilian Atlantic Forest, with comments on the function of some phallic components

description: This dataset contains the digitized treatments in Plazi based on the original journal article Tavares, Gustavo Costa, De Mello, Francisco De A. G., Mendes, Diego Matheus De Mello (2021): A new genus and three new species of Agraeciini (Orthoptera: Tettigoniidae: Conocephalinae) from the Brazilian Atlantic Forest, with comments on the function of some phallic components. Zootaxa 5057 (2): 201-227, DOI: https://doi.org/10.11646/zootaxa.5057.2.3
DOI: 10.15468/zqn85a
title: Plenodomus dezfulensis sp. nov. causing leaf spot of Rapeseed in Iran

description: This dataset contains the digitized treatments in Plazi based on the original journal article Safi, Atena, Mehrabi-Koushki, Mehdi, Farokhinejad, Reza (2021): Plenodomus dezfulensis sp. nov. causing leaf spot of Rapeseed in Iran. Phytotaxa 523 (2): 141-154, DOI: 10.11646/phytotaxa.523.2.2
DOI: 10.5281/zenodo.5592602
title: The landscape of circulating platelet aggregates in COVID-19

description: A characteristic clinical feature of COVID-19 is the frequent incidence of microvascular thrombosis. In fact, COVID-19 autopsy reports have shown widespread thrombotic microangiopathy characterized by extensive diffuse microthrombi within peripheral capillaries and arterioles in lungs, hearts, and other organs, resulting in multiorgan failure. However, the underlying process of COVID-19-associated microvascular thrombosis remains elusive due to the lack of tools to statistically examine platelet aggregation (i.e., the initiation of microthrombus formation) in detail. Here we report the landscape of circulating platelet aggregates in COVID-19 obtained by massive single-cell image-based profiling and temporal monitoring of the blood of COVID-19 patients (n = 110). Surprisingly, our analysis of the big image data shows the anomalous presence of excessive platelet aggregates in nearly 90% of all COVID-19 patients. Furthermore, results indicate strong links between the concentration of platelet aggregates and the severity, mortality, respiratory condition, and vascular endothelial dysfunction level of COVID-19 patients.
description: Source data for paper figures
DOI: 10.5281/zenodo.4698360
title: The landscape of circulating platelet aggregates in COVID-19

description: A characteristic clinical feature of COVID-19 is the frequent incidence of microvascular thrombosis. In fact, COVID-19 autopsy reports have shown widespread thrombotic microangiopathy characterized by extensive diffuse microthrombi within peripheral capillaries and arterioles in lungs, hearts, and other organs, resulting in multiorgan failure. However, the underlying process of COVID-19-associated microvascular thrombosis remains elusive due to the lack of tools to statistically examine platelet aggregation (i.e., the initiation of microthrombus formation) in detail. Here we report the landscape of circulating platelet aggregates in COVID-19 obtained by massive single-cell image-based profiling and temporal monitoring of the blood of COVID-19 patients (n = 110). Surprisingly, our analysis of the big image data shows the anomalous presence of excessive platelet aggregates in nearly 90% of all COVID-19 patients. Furthermore, results indicate strong links between the concentration of platelet aggregates and the severity, mortality, respiratory condition, and vascular endothelial dysfunction level of COVID-19 patients.
description: Source data for paper figures
DOI: 10.5281/zenodo.5592176
title: Dataset - Time-resolved study of holeboring in realistic experimental conditions

description: Dataset for the publication entitled "Time-resolved study of holeboring in realistic experimental conditions".
DOI: 10.5281/zenodo.5592175
title: Dataset - Time-resolved study of holeboring in realistic experimental conditions

description: Dataset for the publication entitled "Time-resolved study of holeboring in realistic experimental conditions".
DOI: 10.3886/e153141v1
title: Breastfeeding support during the COVID-19 pandemic for healthy mothers in Japan

description: In addition to the standard personal characteristic items, the survey covers items to measure professional breastfeeding support in health facilities. A major objective of the project was to compare the professional breastfeeding support for healthy mothers before and during the COVID-19 pandemic. The data were collected online between 15 October 2019 and 25 October 2020 from the pooled panels of an internet research agency in Japan. A delivery before 5 March 2020 was considered as a before-pandemic delivery, and a delivery after 6 March 2020 was a during-pandemic delivery.
DOI: 10.25721/zkk1-v930
title: Tu es là au coeur de nos vie
DOI: 10.25721/6hq1-nb23
title: Saint, Saint est le Seigneur
DOI: 10.15468/ptdc2x
title: A new subgenus of the genus Amara Bonelli, 1810 (Coleoptera: Carabidae) from northeastern Tibet, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Makarov, Kirill V., Sundukov, Yurii N. (2021): A new subgenus of the genus Amara Bonelli, 1810 (Coleoptera: Carabidae) from northeastern Tibet, China. Zootaxa 5057 (2): 228-240, DOI: https://doi.org/10.11646/zootaxa.5057.2.4
DOI: 10.5281/zenodo.3873702
title: bioRxiv 10k

description: This dataset is a CC-BY 4.0 subset of what bioRxiv kindly made available: https://www.biorxiv.org/tdm It is randomized and split into train (6,000), validation (2,000) and test (2,000) subsets - 10,000 PDF / XML pairs in total. The zip files further contain file lists of smaller subsets that used the subject area to potentially create a balanced subset. The zip is similar in structure to the "PMC sample 1943" dataset that was created as part of: https://doi.org/10.1145/2494266.2494271 (a working link is available from: https://grobid.readthedocs.io/en/stable/End-to-end-evaluation/). Therefore it is well suited for evaluation of PDF to XML conversion tools, such as GROBID. The dataset was created as part of eLife's ScienceBeam project.
description: {"references": ["Constantin, A., Steve, P., Andrei, V.: Fully-automated PDF-to-XML conversion of scientific literature. In: Proceedings of the ACM Symposium on Document Engineering, pp. 177\u2013180. ACM, New York (2013). doi: 10.1145/2494266.2494271"]}
DOI: 10.5281/zenodo.3873701
title: bioRxiv 10k

description: This dataset is a CC-BY 4.0 subset of what bioRxiv kindly made available: https://www.biorxiv.org/tdm It is randomized and split into train (6,000), validation (2,000) and test (2,000) subsets - 10,000 PDF / XML pairs in total. The zip files further contain file lists of smaller subsets that used the subject area to potentially create a balanced subset. The zip is similar in structure to the "PMC sample 1943" dataset that was created as part of: https://doi.org/10.1145/2494266.2494271 (a working link is available from: https://grobid.readthedocs.io/en/stable/End-to-end-evaluation/). Therefore it is well suited for evaluation of PDF to XML conversion tools, such as GROBID. The dataset was created as part of eLife's ScienceBeam project.
description: {"references": ["Constantin, A., Steve, P., Andrei, V.: Fully-automated PDF-to-XML conversion of scientific literature. In: Proceedings of the ACM Symposium on Document Engineering, pp. 177\u2013180. ACM, New York (2013). doi: 10.1145/2494266.2494271"]}
DOI: 10.17632/483vh8mdrv.2
title: Effects of the transition from dry forest to pasture on chemical characteristics and enzymatic activity in soils in Northeastern Brazil

description: "Soil Chemistry and Enzymes" is a dataset captured from soils from the 0-10 cm layer of pastures and forests of three municipalities located in the Microregion of Garanhuns, Pernambuco state (Northeast Brazil): Brejão (8°59'39.95"S; 36°32'22.69" W), Garanhuns (8°58'27.25"S; 36°27'8.12"W) and São João (8°48'35.77"S; 36°24'25.19"W). This study evaluated the transition from dry forest (FO) to pastures in a varied productive state, one with less activity (PA) and another more productive (PB). This pasture state was defined based on the Normalized Difference Vegetation Index (NDVI), calculated from images from the Multispectral and Panchromatic Wide-Scan Camera (WPM) of the CBERS 4A satellite (L4) (INPE - Brazil). The "CBERS_4A_WPM_BAND0-4" files represent the cropped images for the study area.
DOI: 10.17632/ykjrmrtcxz.1
title: Measurement of temperatures, HVAC system values and weather-station readings for single-floor industrial building in Croatia

description: This data is measurements for temperature inside building, together with measurements from HVAC system (radiator based) and reading from outside weather station.

Data was used for estimation of parameters of thermodynamic model of building and HVAC system. Outside temperature, heat-flow from HVAC system and Solar radiation were used for inputs, while inside temperatures are outputs of model.

This is industrial building with offices and production space.

Office part is in two-floors and is equipped with separate heating system based on floor-heating. Rooms are equipped with independent thermostats and there are no measurements in them. During winter, temperature in offices is set between 20 and 24 °C, depending if office is occupied.

Production space is separated in four zones: Assembly (largest, 24x16m), Entry (8x8), Mechanical preparation (8x8) and Warehouse (8x16).

Production is space is made from concrete construction with structural insulating panel (SIP). There are several windows on all spaces, made from triple-glazing. There are one small door for personnel and one big doors for loading/unloading, both on Entry outside wall. There are several doors between space, which are closed most of the time. There is one small door connecting Assembly with office part of the building.

HVAC system for production consist of one 35kW hot-water boiler. There is a pump and three-way valve that mixes water to setpoint temperature (usually around 60 °C). Water is then supplied to ceiling radiators in spaces. For each space, there is an open-close valve, controlled by PLC (simple hysteresis ON-OFF controller). 

Outside, there is weather-station Davies, model Vantage Pro2.

Data is following:
Date
Time
Outside temperature (HVAC) °C (this is sensor on one wall without cover, so it is affected by Sun and is not reliable)
Assembly temperature °C
Entry temperature °C
Mechanical preparation temperature °C
Warehouse temperature °C
Flow m3/h (of supply water)
Supply water temperature °C
Return water temperature °C
Assembly valve state (0 is closed, 1 is open)
Entry valve state
Mechanical preparation valve state
Warehouse valve state
Assembly setpoint temperature °C
Entry setpoint temperature °C
Mechanical preparation setpoint temperature °C
Warehouse setpoint temperature °C
Supply water setpoint temperature °C
Outside temperature (weather station) °C (this is reliable outside temperature)
Outside humidity %
Wind speed m/s
Solar radiation W/m2

Measurements are in 15 minute interval (if it was more frequent, it was averaged to 15 minutes).

There are two breaks in data, at 11.1.2019 16:15:00 and at 24.1.2019	17:30:00.

Data also include thermodynamic model that was used with this data (initial model and resulting optimized model).
DOI: 10.17632/bzg2zjh46v.1
title: Polycyclic aromatic hydrocarbons in water of water reservoir

description: Data of analysis of polycyclic aromatic hydrocarbons and ecological risk assessment in water reservoir
DOI: 10.15468/enq4j7
title: Revision of Gypogyna Simon, 1900 (Araneae: Salticidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ruiz, Gustavo R. S., Costa, Erika L. S., Bustamante, Abel A. (2021): Revision of Gypogyna Simon, 1900 (Araneae: Salticidae). Zootaxa 5057 (2): 241-259, DOI: https://doi.org/10.11646/zootaxa.5057.2.5
DOI: 10.17632/9sjfjn9y3v.1
title: A survey of calf management practices and farmer perceptions of calf housing in UK dairy herds

description: Supplementary files associated with the JDS publication: A survey of calf management practices and farmer
perceptions of calf housing in UK dairy herds
DOI: 10.17632/ck365nbpk9.2
title: SemanticSimilarityWithConceptSenses

description: This dataset represents the results of the experimentation of a method for evaluating semantic similarity between concepts in a taxonomy.
The method is based on the information-theoretic approach and allows senses of concepts in a given context to be considered.
Relevance of senses is calculated in terms of semantic relatedness with the compared concepts.
In a previous work [9], the adopted semantic relatedness method was the one described in [10], while in this work we adopted the one described in [11]. 
This results in an improvement of the method.

The dataset is composed of two folders, which contain the results of the previous and the new experimentation, respectively. 
In particular, in each folder there is a set of files, each referring to one pair of the well-known Miller and Charles benchmark dataset [1] for assessing semantic similarity.
For each pair of concepts, the same 28 pairs are all considered as possible different contexts. 
We applied our proposal by extending 7 methods for computing semantic similarity in a taxonomy, selected from the literature.
The methods considered in the experiment are referred to as (R[2], W&P[3], L[4], J&C[5], P&S[6], A[7], A&M[8]):

REFERENCES
[1] Miller G.A., Charles W.G. 1991. Contextual correlates of semantic similarity. Language and Cognitive Processes 6(1).
[2] Resnik P. 1995. Using Information Content to Evaluate Semantic Similarity in a Taxonomy. Int. Joint Conf. on Artificial Intelligence, Montreal.
[3] Wu Z., Palmer M. 1994. Verb semantics and lexical selection. 32nd Annual Meeting of the Associations for Computational Linguistics.
[4] Lin D. 1998. An Information-Theoretic Definition of Similarity. Int. Conf. on Machine Learning.
[5] Jiang J.J., Conrath D.W. 1997. Semantic Similarity Based on Corpus Statistics and Lexical Taxonomy. Inter. Conf. Research on Computational Linguistics.
[6] Pirrò G. 2009. A Semantic Similarity Metric Combining Features and Intrinsic Information Content. Data Knowl. Eng, 68(11).
[7] Adhikari A., Dutta B., Dutta A., Mondal D., Singh S. 2018. An intrinsic information content-based semantic similarity measure considering the disjoint common subsumers of concepts of an ontology. J. Assoc. Inf. Sci. Technol. 69(8).
[8] Adhikari A., Singh S., Mondal D., Dutta B., Dutta A. 2016. A Novel Information Theoretic Framework for Finding Semantic Similarity in WordNet.  CoRR, arXiv:1607.05422, abs/1607.05422.
[9] Formica A., Taglino F. 2021. An Enriched Information-Theoretic Definition of Semantic Similarity in a Taxonomy. IEEE Access, vol. 9.
[10] Schuhmacher M., Ponzetto S. P. 2014. Knowledge-based Graph Document Modeling. 7th ACM International Conference on Web Search and Data Mining.
[11] El Vaigh C. B., Goasdoué F.,  Gravier G., Sébillot P. 2020. A Novel Path-Based Entity Relatedness Measure for Efficient Collective Entity Linking. ISWC 2020.  

Finally, in each file, the Pearson's and the Spearman's correlations of our proposal with respect to human judgement is reported.
DOI: 10.17632/rjyhy4ndnn.1
title: Comparison of health and climate damages between diesel trucks and electric trucks

description: The data show estimates of health and climate damages between diesel trucks and electric trucks. Data supports Figure 1 of the article on Joule, titled "Mostly positive implications of long-haul truck electrification" (https://doi.org/10.1016/j.joule.2021.10.009), by Zhenhong Lin. Results are based on the static AEG-based (average electricity generation) results of Tong et al. (https://pubs.acs.org/doi/10.1021/acs.est.1c01273), with the dynamics adjustment that uses a simple weighting average between two static estimates to reflect the transition of vehicle and grid technologies and without discounting. The results suggest:
The results on Figure 1 suggest the following.
1)	The health and climate benefits of 100% long-haul truck electrification are almost certainly positive.
2)	The net positive benefits become greater with better battery technologies and greater renewable electricity share (from scenario 1 to others).
3)	The benefits of truck electrification are more sensitive to battery technology improvement with a future business-as-usual grid mix (scenario 2 vs 1) than a future high-renewable mix (scenario 4 vs 3).
4)	Accelerating the deployment of renewable electricity (i.e., grid decarbonization) can significantly reduce the health and climate damages of long-haul electric trucks (from scenario 4 to 5 to 6).
DOI: 10.5281/zenodo.5592610
title: Dataset for "Gains in biodiversity conservation and ecosystem services from the expansion of the planet's protected areas"

description: <em>Overview of dataset</em> This dataset consists of nine raster layers representing modelled scenarios to meet the target of protecting 30% of all land areas, under three key objectives (i.e. maximizing landscape intactness, species conservation potential and ecosystem services): Objective Scenario/indicator Filename Landscape intactness Human footprint HumanFootprint_30.tif Landscape intactness Ecosystem intactness EcosystemIntactness_30.tif Landscape intactness Biodiversity intactness BiodiversityIntactness_30.tif Biodiversity conservation Total species richness TotalSpeciesRichness_30.tif Biodiversity conservation Threatened species richness TheatenedSpeciesRichness_30.tif Biodiversity conservation Range-size rarity RangeSizeRarity_30.tif Biodiversity conservation Key biodiversity areas SizeKBA_30.tif Ecosystem services Climate-change mitigation potential ClimateChangeMitigation_30.tif Ecosystem services Nutrient-regulation potential NutrientRegulation_30.tif It also contains one R-script that provides an example of our analyses. This dataset is designed to accompany Zeng et al. and the full methodology is described in that publication. Briefly, we first calculated the coverage of existing protected areas, and the coverage needed to close the gap to achieve the target of protecting 30% of all land areas, across 238 countries. We then assigned the placement of these areas based on nine scenarios representing three key objectives—prioritizing the intactness of landscapes, species conservation potential, and ecosystem services. Here we select and ensure that the highest-ranked areas retain their present conservation value across these objectives. Last, we quantified the biodiversity, climate-change mitigation and nutrient-regulation benefits.
DOI: 10.5281/zenodo.5592609
title: Dataset for "Gains in biodiversity conservation and ecosystem services from the expansion of the planet's protected areas"

description: <em>Overview of dataset</em> This dataset consists of nine raster layers representing modelled scenarios to meet the target of protecting 30% of all land areas, under three key objectives (i.e. maximizing landscape intactness, species conservation potential and ecosystem services): Objective Scenario/indicator Filename Landscape intactness Human footprint HumanFootprint_30.tif Landscape intactness Ecosystem intactness EcosystemIntactness_30.tif Landscape intactness Biodiversity intactness BiodiversityIntactness_30.tif Biodiversity conservation Total species richness TotalSpeciesRichness_30.tif Biodiversity conservation Threatened species richness TheatenedSpeciesRichness_30.tif Biodiversity conservation Range-size rarity RangeSizeRarity_30.tif Biodiversity conservation Key biodiversity areas SizeKBA_30.tif Ecosystem services Climate-change mitigation potential ClimateChangeMitigation_30.tif Ecosystem services Nutrient-regulation potential NutrientRegulation_30.tif It also contains one R-script that provides an example of our analyses. This dataset is designed to accompany Zeng et al. and the full methodology is described in that publication. Briefly, we first calculated the coverage of existing protected areas, and the coverage needed to close the gap to achieve the target of protecting 30% of all land areas, across 238 countries. We then assigned the placement of these areas based on nine scenarios representing three key objectives—prioritizing the intactness of landscapes, species conservation potential, and ecosystem services. Here we select and ensure that the highest-ranked areas retain their present conservation value across these objectives. Last, we quantified the biodiversity, climate-change mitigation and nutrient-regulation benefits.
DOI: 10.17632/v9px86xh8w.1
title: Removal and Dispersal of Biofluid Films by Powered Medical Devices: Modelling Infectious Agent Spreading in Dentistry. Eames et al

description: Movies 1-10: Top view videos (related to Figure 2) showing the interaction of air-rotor with a water layer.

Mode-1: The normal operating condition which involves rotation of the bur driven by the air jet while allowing the expulsion of both the air and coolant jet. 
Mode-2: Rotation of the bur driven by the air jet allowing the expulsion of the air while water expulsion was inhibited. 
Mode-3: Rotation of the bur driven by the air jet while both air and water jet expulsion were inhibited. 

Movie 1: Operation in mode-2 but with removed bur on dyed layer.
Movie 2: Operation in mode-2 on dyed layer.
Movie 3: Operation in full condition (mode-1) on dyed layer.

Investigating droplet splashes from water/air jet:
Movie 4: Operation of drill only (mode-3) on dyed film (~3mm thickness).
Movie 5: Operation in full condition (mode-1) with the flow of dyed water on undyed layer (~3mm thickness).
Movie 6: Operation in full condition (mode-1) with the flow of dyed water on dish with no water layer.
Movie 7: Operation in mode-1 but with removed bur and flow of dyed water on undyed layer (~3mm thickness).

Investigating effects of layer thickness:
Movie 8: Operation of drill only (mode-3) on thin dyed water layer (less than ~0.5mm thickness). 
Movie 9: Operation of drill only (mode-3) on medium dyed water layer (~1mm thickness).
Movie 10: Operation of drill only (mode-3) on thick dyed water layer (~4mm thickness).


Movies 11-16: Videos (taken with high-speed camera) of the burr engaging with water (movies 11-13, Fig 3a) or unstimulated saliva collected from human participant (movies 14-16, Fig 3b) droplet/ film.

Movie 17: Video of the interaction of the air-rotor (operating in mode-1) with model teeth coated with fluorescent dye. The video was taken using fluorescent lamp.
Movie 18: Video of the interaction of the air-rotor (operating in mode-1 and the coolant water dyed by high concentration of food dye) with model teeth. The video was taken using a bright field light.