cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.18761415
title: Identification of circular RNA expression profiles in renal fibrosis induced by obstructive injury

description: Advancing renal fibrosis is the common histopathological feature of chronic obstructive nephropathy, representing the final pathway of nearly all chronic and progressive nephropathies. Increasing evidences suggest that circular RNAs (circRNAs) are crucial regulatory molecules present at virtually every level of the cellular pathophysiological process. Nonetheless, there are a few evidences for the role of circRNAs in renal fibrosis induced by obstructive nephropathy. We performed RNA-seq analysis to analyze the expression profiles of circRNAs in the obstructed kidneys to identify the potential circRNAs and their network. With silk ligated the left ureter to establish a mice unilateral ureteral obstruction (UUO) model. Renal tissue circRNAs were obtained and were screened by a circRNA microarray. The circRNA-miRNA-mRNA regulatory network and the target genes were visualized using Cytoscape software. The microarray results showed that 5454 and 2935 circRNAs were detected in the control and UUO group, respectively. There were 605 circRNAs up-regulated and 745 circRNAs down-regulated in the obstructive kidneys. The top 5 up-regulated and down-regulated circRNAs were chosen for predicting the circRNA/miRNA/target mRNAs triple network. The GO (Gene Ontology) and KEGG (Kyoto Encyclopedia of Genes and Genomes) analysis showed that these circRNAs and the triple network were enriched in the process of apoptosis, p53 signaling pathway, cell growth and cell death, which might participate in the pathogenesis of obstructive nephrology. Our results show that the dis-regulated circRNAs might play crucial roles in the pathogenesis of obstructive nephropathy, which proceeds to identify novel therapeutic targets for chronic kidney disease.
DOI: 10.6084/m9.figshare.18761415.v1
title: Identification of circular RNA expression profiles in renal fibrosis induced by obstructive injury

description: Advancing renal fibrosis is the common histopathological feature of chronic obstructive nephropathy, representing the final pathway of nearly all chronic and progressive nephropathies. Increasing evidences suggest that circular RNAs (circRNAs) are crucial regulatory molecules present at virtually every level of the cellular pathophysiological process. Nonetheless, there are a few evidences for the role of circRNAs in renal fibrosis induced by obstructive nephropathy. We performed RNA-seq analysis to analyze the expression profiles of circRNAs in the obstructed kidneys to identify the potential circRNAs and their network. With silk ligated the left ureter to establish a mice unilateral ureteral obstruction (UUO) model. Renal tissue circRNAs were obtained and were screened by a circRNA microarray. The circRNA-miRNA-mRNA regulatory network and the target genes were visualized using Cytoscape software. The microarray results showed that 5454 and 2935 circRNAs were detected in the control and UUO group, respectively. There were 605 circRNAs up-regulated and 745 circRNAs down-regulated in the obstructive kidneys. The top 5 up-regulated and down-regulated circRNAs were chosen for predicting the circRNA/miRNA/target mRNAs triple network. The GO (Gene Ontology) and KEGG (Kyoto Encyclopedia of Genes and Genomes) analysis showed that these circRNAs and the triple network were enriched in the process of apoptosis, p53 signaling pathway, cell growth and cell death, which might participate in the pathogenesis of obstructive nephrology. Our results show that the dis-regulated circRNAs might play crucial roles in the pathogenesis of obstructive nephropathy, which proceeds to identify novel therapeutic targets for chronic kidney disease.
DOI: 10.6084/m9.figshare.11945673
title: Additional file 1 of Autologous bone marrow stem cell transplantation via the hepatic artery for the treatment of hepatitis B virus-related cirrhosis: a PRISMA-compliant meta-analysis based on the Chinese population

description: Additional file 1: Supplementary Figure 1. Forest plot of the comparison of percentage of total bilirubin (TBIL, A), albumin (ALB, B), alanine aminotransferase (ALT, C), aspartate aminotransferase (AST, D) and prothrombin time (PT, E) between the experimental and control group before therapy. Control group, RT alone group; Experimental group, RT plus ABMSC therapy; ABMSC, autologous bone marrow stem cell; RT, routing therapy. The fixed-effects meta-analysis model (Inverse Variance method) was used.
DOI: 10.6084/m9.figshare.11945673.v1
title: Additional file 1 of Autologous bone marrow stem cell transplantation via the hepatic artery for the treatment of hepatitis B virus-related cirrhosis: a PRISMA-compliant meta-analysis based on the Chinese population

description: Additional file 1: Supplementary Figure 1. Forest plot of the comparison of percentage of total bilirubin (TBIL, A), albumin (ALB, B), alanine aminotransferase (ALT, C), aspartate aminotransferase (AST, D) and prothrombin time (PT, E) between the experimental and control group before therapy. Control group, RT alone group; Experimental group, RT plus ABMSC therapy; ABMSC, autologous bone marrow stem cell; RT, routing therapy. The fixed-effects meta-analysis model (Inverse Variance method) was used.
DOI: 10.6084/m9.figshare.18761421
title: Safety and effectiveness of lanthanum carbonate for hyperphosphatemia in chronic kidney disease (CKD) patients: a meta-analysis

description: The aim of this study was to determine the efficacy and safety of lanthanum carbonate (LC) versus calcium salts, non-LC phosphate binders (PBs), sevelamer, or placebo in patients with chronic kidney disease (CKD). A literature search on PubMed, Embase, and Cochrane Library databases was conducted up to 18 June 2021. Data acquisition and quality assessment were performed by two reviewers. Meta-analysis was performed to evaluate the serum biochemical parameters, adverse events, and patient-level outcomes of LC, non-LC PBs, and sevelamer for hyperphosphatemia in patients with CKD. Heterogeneity across studies was assessed utilizing the <i>I</i><sup>2</sup> statistic and <i>Q</i>-test, and a random effect model was selected to calculate the pooled effect size. A total of 26 randomized, controlled trials and 3 observational studies were included. Compared to the other groups, better control effect of serum phosphorus (RR = 2.68, <i>p</i> &lt; 0.001), reduction in serum phosphorus (95%CI = −1.93, −0.99; <i>p</i> &lt; 0.001), Ca × P (95%CI = −13.89, −2.99; <i>p</i> = 0.002), serum intact parathyroid hormone levels (95%CI = −181.17, −3.96, <i>p</i> = 0.041) were found in LC group. Besides, reduced risk of various adverse effects, such as hypotension, abdominal pain, diarrhea, dyspepsia, and a score of coronary artery calcification were identified with LC in comparison to calcium salt, non-LC PBs, or placebo group. Significantly lower risk in mortality with LC treatment vs. non-LC PBs was observed, while no significant difference was identified between LC and calcium salt groups. LC might be an alternative treatment for hyperphosphatemia in patients with CKD considering its comprehensive curative effect.
DOI: 10.6084/m9.figshare.18761421.v1
title: Safety and effectiveness of lanthanum carbonate for hyperphosphatemia in chronic kidney disease (CKD) patients: a meta-analysis

description: The aim of this study was to determine the efficacy and safety of lanthanum carbonate (LC) versus calcium salts, non-LC phosphate binders (PBs), sevelamer, or placebo in patients with chronic kidney disease (CKD). A literature search on PubMed, Embase, and Cochrane Library databases was conducted up to 18 June 2021. Data acquisition and quality assessment were performed by two reviewers. Meta-analysis was performed to evaluate the serum biochemical parameters, adverse events, and patient-level outcomes of LC, non-LC PBs, and sevelamer for hyperphosphatemia in patients with CKD. Heterogeneity across studies was assessed utilizing the <i>I</i><sup>2</sup> statistic and <i>Q</i>-test, and a random effect model was selected to calculate the pooled effect size. A total of 26 randomized, controlled trials and 3 observational studies were included. Compared to the other groups, better control effect of serum phosphorus (RR = 2.68, <i>p</i> &lt; 0.001), reduction in serum phosphorus (95%CI = −1.93, −0.99; <i>p</i> &lt; 0.001), Ca × P (95%CI = −13.89, −2.99; <i>p</i> = 0.002), serum intact parathyroid hormone levels (95%CI = −181.17, −3.96, <i>p</i> = 0.041) were found in LC group. Besides, reduced risk of various adverse effects, such as hypotension, abdominal pain, diarrhea, dyspepsia, and a score of coronary artery calcification were identified with LC in comparison to calcium salt, non-LC PBs, or placebo group. Significantly lower risk in mortality with LC treatment vs. non-LC PBs was observed, while no significant difference was identified between LC and calcium salt groups. LC might be an alternative treatment for hyperphosphatemia in patients with CKD considering its comprehensive curative effect.
DOI: 10.6084/m9.figshare.24948789.v1
title: Taxonomy of Retraction Reasons - Mapping of Reasons

description: The objective of this work is to refine the classification of retractions into distinct categories and subcategories. This is the mindmap of the classifications.
DOI: 10.5517/ccdc.csd.cc2blfw8
title: CCDC 2162680: Experimental Crystal Structure Determination

description: Related Article: Z. Jiang, W. Duan, W. Lin, L. Yang, Z. Wu, J. Wang, S. Wang, P. Du, Q. Li|2022|Materials Today Chemistry|25|100973|doi:10.1016/j.mtchem.2022.100973
description: Related Article: Zhongwen Jiang, Wanchun Duan, Weimin Lin, Lingyi Yang, Zhuang Wu, Junyi Wang, Shengda Wang, Pingwu Du and Qiaowei Li|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f4plw
title: CCDC 2238838: Experimental Crystal Structure Determination

description: Related Article: Jiyu Sun, Daniel A. Decato, Vyacheslav S. Bryantsev, Eric A. John, Orion B. Berryman|2023|Chemical Science|14|8924|doi:10.1039/D3SC02348F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d3st4
title: CCDC 2208186: Experimental Crystal Structure Determination

description: Related Article: Shan Zhu, Wenxiang Xu, Dongjing Hong, Weikang Wu, Fuxiang Chai, Xiancui Zhu, Shuangliu Zhou, Shaowu Wang|2023|Inorg.Chem.|62|381|doi:10.1021/acs.inorgchem.2c03488
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d3sv5
title: CCDC 2208187: Experimental Crystal Structure Determination

description: Related Article: Shan Zhu, Wenxiang Xu, Dongjing Hong, Weikang Wu, Fuxiang Chai, Xiancui Zhu, Shuangliu Zhou, Shaowu Wang|2023|Inorg.Chem.|62|381|doi:10.1021/acs.inorgchem.2c03488
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d3sw6
title: CCDC 2208188: Experimental Crystal Structure Determination

description: Related Article: Shan Zhu, Wenxiang Xu, Dongjing Hong, Weikang Wu, Fuxiang Chai, Xiancui Zhu, Shuangliu Zhou, Shaowu Wang|2023|Inorg.Chem.|62|381|doi:10.1021/acs.inorgchem.2c03488
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d3sx7
title: CCDC 2208189: Experimental Crystal Structure Determination

description: Related Article: Shan Zhu, Wenxiang Xu, Dongjing Hong, Weikang Wu, Fuxiang Chai, Xiancui Zhu, Shuangliu Zhou, Shaowu Wang|2023|Inorg.Chem.|62|381|doi:10.1021/acs.inorgchem.2c03488
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d3sy8
title: CCDC 2208190: Experimental Crystal Structure Determination

description: Related Article: Shan Zhu, Wenxiang Xu, Dongjing Hong, Weikang Wu, Fuxiang Chai, Xiancui Zhu, Shuangliu Zhou, Shaowu Wang|2023|Inorg.Chem.|62|381|doi:10.1021/acs.inorgchem.2c03488
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d3sz9
title: CCDC 2208191: Experimental Crystal Structure Determination

description: Related Article: Shan Zhu, Wenxiang Xu, Dongjing Hong, Weikang Wu, Fuxiang Chai, Xiancui Zhu, Shuangliu Zhou, Shaowu Wang|2023|Inorg.Chem.|62|381|doi:10.1021/acs.inorgchem.2c03488
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d3t0c
title: CCDC 2208192: Experimental Crystal Structure Determination

description: Related Article: Shan Zhu, Wenxiang Xu, Dongjing Hong, Weikang Wu, Fuxiang Chai, Xiancui Zhu, Shuangliu Zhou, Shaowu Wang|2023|Inorg.Chem.|62|381|doi:10.1021/acs.inorgchem.2c03488
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d3t5j
title: CCDC 2208197: Experimental Crystal Structure Determination

description: Related Article: Shan Zhu, Wenxiang Xu, Dongjing Hong, Weikang Wu, Fuxiang Chai, Xiancui Zhu, Shuangliu Zhou, Shaowu Wang|2023|Inorg.Chem.|62|381|doi:10.1021/acs.inorgchem.2c03488
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hb7tx
title: CCDC 2303759: Experimental Crystal Structure Determination

description: Related Article: Renyong Geng, Shenzheng Gao, Jinjie Liu, Xinjie Zhou, Zhixian Sun, Xinyu Ma, Xuening Lu, Hao Xu, Ting Su, Zhen Zhang, Shuisheng Chen, Jun Yin, Xin Song|2024|Chem.Eng.Journal|483|149035|doi:10.1016/j.cej.2024.149035
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hb7x0
title: CCDC 2303762: Experimental Crystal Structure Determination

description: Related Article: Renyong Geng, Shenzheng Gao, Jinjie Liu, Xinjie Zhou, Zhixian Sun, Xinyu Ma, Xuening Lu, Hao Xu, Ting Su, Zhen Zhang, Shuisheng Chen, Jun Yin, Xin Song|2024|Chem.Eng.Journal|483|149035|doi:10.1016/j.cej.2024.149035
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10042587
title: Do patients of different craniofacial patterns have different volumes of the upper airways? A systematic review with network meta-analysis

description: Dataset for all analyses
DOI: 10.5281/zenodo.10042588
title: Do patients of different craniofacial patterns have different volumes of the upper airways? A systematic review with network meta-analysis

description: Dataset for all analyses
DOI: 10.58032/agh/k6basz
title: Data collected via Scopus API showing scientific cooperation between authors based on their continent of affiliation

description: To build a set of 13 810 394 scientific papers, we collect and analyse bibliographic descriptions of papers available through the Scopus API [accessed on July 2022].
DOI: 10.6084/m9.figshare.11945760.v1
title: Additional file 2 of Genome-wide identification of Diacylglycerol Acyltransferases (DGAT) family genes influencing Milk production in Buffalo

description: Additional file 2 Details of Genome-wide identified DGAT family members in Bos taurus.
DOI: 10.6084/m9.figshare.21382946
title: Additional file 10 of Profiling ATM regulated genes in Drosophila at physiological condition and after ionizing radiation

description: Additional file 10: Table S7. Differentially expressed miRNAs in atm mutated flies after X-ray irradiation.
DOI: 10.6084/m9.figshare.11945754.v1
title: Additional file 1 of Genome-wide identification of Diacylglycerol Acyltransferases (DGAT) family genes influencing Milk production in Buffalo

description: Additional file 1. 21 DGAT amino acid sequences of cattle, human, mouse and rat obtained from UniProt (https://www.uniprot.org/).
DOI: 10.6084/m9.figshare.11945760
title: Additional file 2 of Genome-wide identification of Diacylglycerol Acyltransferases (DGAT) family genes influencing Milk production in Buffalo

description: Additional file 2 Details of Genome-wide identified DGAT family members in Bos taurus.
DOI: 10.6084/m9.figshare.21382948
title: Additional file 4 of A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology

description: Additional file 4: Supplemental Table 3. Protein Ontology representation of SARS-CoV-2 proteins. Comparative information in RefSeq and UniProtKB is also provided.
DOI: 10.6084/m9.figshare.11945754
title: Additional file 1 of Genome-wide identification of Diacylglycerol Acyltransferases (DGAT) family genes influencing Milk production in Buffalo

description: Additional file 1. 21 DGAT amino acid sequences of cattle, human, mouse and rat obtained from UniProt (https://www.uniprot.org/).
DOI: 10.6084/m9.figshare.21382948.v1
title: Additional file 4 of A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology

description: Additional file 4: Supplemental Table 3. Protein Ontology representation of SARS-CoV-2 proteins. Comparative information in RefSeq and UniProtKB is also provided.
DOI: 10.6084/m9.figshare.21382952
title: Additional file 12 of Profiling ATM regulated genes in Drosophila at physiological condition and after ionizing radiation

description: Additional file 12: Table S9. Differentially expressed lncRNAs in atm mutated flies.
DOI: 10.6084/m9.figshare.21382952.v1
title: Additional file 12 of Profiling ATM regulated genes in Drosophila at physiological condition and after ionizing radiation

description: Additional file 12: Table S9. Differentially expressed lncRNAs in atm mutated flies.
DOI: 10.6084/m9.figshare.21382946.v1
title: Additional file 10 of Profiling ATM regulated genes in Drosophila at physiological condition and after ionizing radiation

description: Additional file 10: Table S7. Differentially expressed miRNAs in atm mutated flies after X-ray irradiation.
DOI: 10.6084/m9.figshare.21382955
title: Additional file 13 of Profiling ATM regulated genes in Drosophila at physiological condition and after ionizing radiation

description: Additional file 13: Table S10. Differentially expressed lncRNAs in atm mutated flies after X-ray irradiation.
DOI: 10.6084/m9.figshare.21382955.v1
title: Additional file 13 of Profiling ATM regulated genes in Drosophila at physiological condition and after ionizing radiation

description: Additional file 13: Table S10. Differentially expressed lncRNAs in atm mutated flies after X-ray irradiation.
DOI: 10.6084/m9.figshare.21382970
title: Additional file 4 of Profiling ATM regulated genes in Drosophila at physiological condition and after ionizing radiation

description: Additional file 4: Table S1. mRNA counts.
DOI: 10.6084/m9.figshare.21382970.v1
title: Additional file 4 of Profiling ATM regulated genes in Drosophila at physiological condition and after ionizing radiation

description: Additional file 4: Table S1. mRNA counts.
DOI: 10.6084/m9.figshare.21382973
title: Additional file 5 of Profiling ATM regulated genes in Drosophila at physiological condition and after ionizing radiation

description: Additional file 5: Table S2. Protein-coding genes sequenced.
DOI: 10.6084/m9.figshare.21382973.v1
title: Additional file 5 of Profiling ATM regulated genes in Drosophila at physiological condition and after ionizing radiation

description: Additional file 5: Table S2. Protein-coding genes sequenced.
DOI: 10.17031/ioohxw
title: 1960-1970 Barnes, RSK and Coughlan, J Blackwater Estuary Bottom Fauna Dredge Survey

description: A number of additions and corrections are made to the Blackwater Estuary fauna list. Distribution patterns revealed by a survey of the benthic fauna of the Blackwater Estuary in May 1970 are described, and changes in the frequency of occurrence of a number of species between 1960 and 1970 are discussed. It is concluded that the fauna of the region has, to a large extent, recovered from the severe winters of 1961-62 and 1962-63.
DOI: 10.6084/m9.figshare.21382976
title: Additional file 6 of Profiling ATM regulated genes in Drosophila at physiological condition and after ionizing radiation

description: Additional file 6: Table S3. Differentially expressed protein-coding genes in atm mutated flies.
DOI: 10.6084/m9.figshare.21382976.v1
title: Additional file 6 of Profiling ATM regulated genes in Drosophila at physiological condition and after ionizing radiation

description: Additional file 6: Table S3. Differentially expressed protein-coding genes in atm mutated flies.
DOI: 10.6084/m9.figshare.21382985
title: Additional file 9 of Profiling ATM regulated genes in Drosophila at physiological condition and after ionizing radiation

description: Additional file 9: Table S6. Differentially expressed miRNAs in atm mutated flies.