cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17204880
title: Additional file 4 of A novel strategy to uncover specific GO terms/phosphorylation pathways in phosphoproteomic data in Arabidopsis thaliana

description: Additional file 4 : Table S4. Overrepresented GO terms IDs for BP, MF and CC from the different contrats groups of Fig. 2.
DOI: 10.6084/m9.figshare.17204883
title: Additional file 5 of A novel strategy to uncover specific GO terms/phosphorylation pathways in phosphoproteomic data in Arabidopsis thaliana

description: Additional file 5 : Table S5. Percentage of the genes from Et sample present in the genes associated to each GO term (GenRatio) for CG2 and CG3 and for BP, MF and CC.
DOI: 10.6084/m9.figshare.17204883.v1
title: Additional file 5 of A novel strategy to uncover specific GO terms/phosphorylation pathways in phosphoproteomic data in Arabidopsis thaliana

description: Additional file 5 : Table S5. Percentage of the genes from Et sample present in the genes associated to each GO term (GenRatio) for CG2 and CG3 and for BP, MF and CC.
DOI: 10.6084/m9.figshare.17204886
title: Additional file 6 of A novel strategy to uncover specific GO terms/phosphorylation pathways in phosphoproteomic data in Arabidopsis thaliana

description: Additional file 6 : Table S6. IDs and descriptions of the 81 unique phosphoproteins from Et sample that were present in the six GO terms related to RNA process (BP) for CG2 and CG3 (Fig. 2).
DOI: 10.6084/m9.figshare.17204886.v1
title: Additional file 6 of A novel strategy to uncover specific GO terms/phosphorylation pathways in phosphoproteomic data in Arabidopsis thaliana

description: Additional file 6 : Table S6. IDs and descriptions of the 81 unique phosphoproteins from Et sample that were present in the six GO terms related to RNA process (BP) for CG2 and CG3 (Fig. 2).
DOI: 10.6084/m9.figshare.17204902
title: Additional file 2 of A cis-regulatory-directed pipeline for the identification of genes involved in cardiac development and disease

description: Additional file 2. List of genes associated with both cardiac-specific promoters and enhancers.
DOI: 10.6084/m9.figshare.17204902.v1
title: Additional file 2 of A cis-regulatory-directed pipeline for the identification of genes involved in cardiac development and disease

description: Additional file 2. List of genes associated with both cardiac-specific promoters and enhancers.
DOI: 10.6084/m9.figshare.17204907.v1
title: Additional file 1 of Driving mosaicism: somatic variants in reference population databases and effect on variant interpretation in rare genetic disease

description: Additional file 1. Supplementary tables S1–S7. Table S1. Summary of the 1388 genes with the associated autosomal dominant conditions. Table S2. Summary of AD genes and the associated conditions with their corresponding ClinVar likely pathogenic and pathogenic SNVs in the ExAC catalog. Table S3. Summary of AD genes and the associated early onset, severe conditions with their corresponding ClinVar likely pathogenic and pathogenic SNVs in the ExAC catalog. Table S4. gnomAD variant assessment for the genes that show evidence of mosaicism in ExAC. Table 5. Mosaicim in hematopoietic genes in ExAC. Table S6. Column names and corresponding descriptions for the tables S1-S5. Table S7. Phenotype assessment criteria.
DOI: 10.6084/m9.figshare.17204907
title: Additional file 1 of Driving mosaicism: somatic variants in reference population databases and effect on variant interpretation in rare genetic disease

description: Additional file 1. Supplementary tables S1–S7. Table S1. Summary of the 1388 genes with the associated autosomal dominant conditions. Table S2. Summary of AD genes and the associated conditions with their corresponding ClinVar likely pathogenic and pathogenic SNVs in the ExAC catalog. Table S3. Summary of AD genes and the associated early onset, severe conditions with their corresponding ClinVar likely pathogenic and pathogenic SNVs in the ExAC catalog. Table S4. gnomAD variant assessment for the genes that show evidence of mosaicism in ExAC. Table 5. Mosaicim in hematopoietic genes in ExAC. Table S6. Column names and corresponding descriptions for the tables S1-S5. Table S7. Phenotype assessment criteria.
DOI: 10.6084/m9.figshare.17204943
title: Additional file 1 of Prevalence of germline TP53 mutation among early onset middle eastern breast cancer patients

description: Additional file 1
DOI: 10.6084/m9.figshare.17204943.v1
title: Additional file 1 of Prevalence of germline TP53 mutation among early onset middle eastern breast cancer patients

description: Additional file 1
DOI: 10.6084/m9.figshare.17204956
title: Additional file 2 of RNA-seq analysis identified glucose-responsive genes and YqfO as a global regulator in Bacillus subtilis

description: Additional file 2: Table S1. a Glucose-regulated genes (high threshold). b Glucose-regulated genes (low threshold). Table S2. YqfO-regulated genes. Table S3. CshA-regulated genes. Table S4. YlxR-regulated genes. Table S5. cshA/ylxR/yqfO-regulated genes.
DOI: 10.6084/m9.figshare.17204956.v1
title: Additional file 2 of RNA-seq analysis identified glucose-responsive genes and YqfO as a global regulator in Bacillus subtilis

description: Additional file 2: Table S1. a Glucose-regulated genes (high threshold). b Glucose-regulated genes (low threshold). Table S2. YqfO-regulated genes. Table S3. CshA-regulated genes. Table S4. YlxR-regulated genes. Table S5. cshA/ylxR/yqfO-regulated genes.
DOI: 10.6084/m9.figshare.17204961
title: Additional file 1 of Flimma: a federated and privacy-aware tool for differential gene expression analysis

description: Additional file 1 Table S1.
DOI: 10.6084/m9.figshare.17204961.v1
title: Additional file 1 of Flimma: a federated and privacy-aware tool for differential gene expression analysis

description: Additional file 1 Table S1.
DOI: 10.6084/m9.figshare.17204964
title: Additional file 2 of Flimma: a federated and privacy-aware tool for differential gene expression analysis

description: Additional file 2 Table S2
DOI: 10.6084/m9.figshare.17204964.v1
title: Additional file 2 of Flimma: a federated and privacy-aware tool for differential gene expression analysis

description: Additional file 2 Table S2
DOI: 10.6084/m9.figshare.17204967
title: Additional file 3 of Flimma: a federated and privacy-aware tool for differential gene expression analysis

description: Additional file 3 Table S3
DOI: 10.6084/m9.figshare.17204967.v1
title: Additional file 3 of Flimma: a federated and privacy-aware tool for differential gene expression analysis

description: Additional file 3 Table S3
DOI: 10.6084/m9.figshare.17204973
title: Additional file 5 of Flimma: a federated and privacy-aware tool for differential gene expression analysis

description: Additional file 5 Table S4
DOI: 10.6084/m9.figshare.17204973.v1
title: Additional file 5 of Flimma: a federated and privacy-aware tool for differential gene expression analysis

description: Additional file 5 Table S4
DOI: 10.6084/m9.figshare.17204976
title: Additional file 6 of Flimma: a federated and privacy-aware tool for differential gene expression analysis

description: Additional file 6 Table S5
DOI: 10.6084/m9.figshare.17204976.v1
title: Additional file 6 of Flimma: a federated and privacy-aware tool for differential gene expression analysis

description: Additional file 6 Table S5
DOI: 10.6084/m9.figshare.17204979
title: Additional file 7 of Flimma: a federated and privacy-aware tool for differential gene expression analysis

description: Additional file 7 Table S6
DOI: 10.6084/m9.figshare.17204979.v1
title: Additional file 7 of Flimma: a federated and privacy-aware tool for differential gene expression analysis

description: Additional file 7 Table S6
DOI: 10.6084/m9.figshare.17204982
title: Additional file 8 of Flimma: a federated and privacy-aware tool for differential gene expression analysis

description: Additional file 8 Table S7
DOI: 10.6084/m9.figshare.17204982.v1
title: Additional file 8 of Flimma: a federated and privacy-aware tool for differential gene expression analysis

description: Additional file 8 Table S7
DOI: 10.6084/m9.figshare.17205024
title: Additional file 2 of The DNMT1 inhibitor GSK-3484862 mediates global demethylation in murine embryonic stem cells

description: Additional file 2: Table S1. qRT-PCR data for all samples.
DOI: 10.6084/m9.figshare.17205024.v1
title: Additional file 2 of The DNMT1 inhibitor GSK-3484862 mediates global demethylation in murine embryonic stem cells

description: Additional file 2: Table S1. qRT-PCR data for all samples.
DOI: 10.6084/m9.figshare.17205027.v1
title: Additional file 3 of The DNMT1 inhibitor GSK-3484862 mediates global demethylation in murine embryonic stem cells

description: Additional file 3: Table S2. P-values for upregulation of indicated genes and transposons.
DOI: 10.6084/m9.figshare.17205027
title: Additional file 3 of The DNMT1 inhibitor GSK-3484862 mediates global demethylation in murine embryonic stem cells

description: Additional file 3: Table S2. P-values for upregulation of indicated genes and transposons.
DOI: 10.6084/m9.figshare.17205030
title: Additional file 4 of The DNMT1 inhibitor GSK-3484862 mediates global demethylation in murine embryonic stem cells

description: Additional file 4: Table S3. Mapping and conversion statistics for Whole Genome Bisulfite Sequencing data used in this publication.
DOI: 10.6084/m9.figshare.17205030.v1
title: Additional file 4 of The DNMT1 inhibitor GSK-3484862 mediates global demethylation in murine embryonic stem cells

description: Additional file 4: Table S3. Mapping and conversion statistics for Whole Genome Bisulfite Sequencing data used in this publication.
DOI: 10.6084/m9.figshare.17204986
title: Additional file 10 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 10. Consistency_Check_Records.xls is the results of the consistency checking exercises for screening at the title/abstract level and the full text level.
DOI: 10.6084/m9.figshare.17204986.v1
title: Additional file 10 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 10. Consistency_Check_Records.xls is the results of the consistency checking exercises for screening at the title/abstract level and the full text level.
DOI: 10.6084/m9.figshare.17204989
title: Additional file 11 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 11. Data_Coding_Fields.xls lists the metadata fields, the codes used in each field, and a description of how the field or codes changed from the protocol. It also lists instructions and notes given to coders. For fields requiring extensive instructions, we list the codes and their instructions on separate sheets.
DOI: 10.6084/m9.figshare.17204989.v1
title: Additional file 11 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 11. Data_Coding_Fields.xls lists the metadata fields, the codes used in each field, and a description of how the field or codes changed from the protocol. It also lists instructions and notes given to coders. For fields requiring extensive instructions, we list the codes and their instructions on separate sheets.
DOI: 10.6084/m9.figshare.17204995
title: Additional file 13 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 13. Adams_et_al_2021_Systematic_Map.accdb is the systematic map database for viewing and editing in Microsoft Access.
DOI: 10.6084/m9.figshare.17204995.v1
title: Additional file 13 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 13. Adams_et_al_2021_Systematic_Map.accdb is the systematic map database for viewing and editing in Microsoft Access.
DOI: 10.6084/m9.figshare.17204998
title: Additional file 14 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 14. Adams_et_al_2021_Systematic_Map_Runtime.accde is the systematic map database for viewing in Microsoft Access or in Microsoft Access Runtime, which can be downloaded for free at https://support.microsoft.com/en-us/office/download-and-install-microsoft-365-access-runtime-185c5a32-8ba9-491e-ac76-91cbe3ea09c9. If opened in Microsoft Access, the user can edit the database and run queries, but not edits or queries will be saved.
DOI: 10.6084/m9.figshare.17205001
title: Additional file 15 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 15. Adams_et_al_2021_Systematic_Map_Excel.xls contains a version of the systematic map in Microsoft Excel
DOI: 10.6084/m9.figshare.17204998.v1
title: Additional file 14 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 14. Adams_et_al_2021_Systematic_Map_Runtime.accde is the systematic map database for viewing in Microsoft Access or in Microsoft Access Runtime, which can be downloaded for free at https://support.microsoft.com/en-us/office/download-and-install-microsoft-365-access-runtime-185c5a32-8ba9-491e-ac76-91cbe3ea09c9. If opened in Microsoft Access, the user can edit the database and run queries, but not edits or queries will be saved.
DOI: 10.6084/m9.figshare.17205001.v1
title: Additional file 15 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 15. Adams_et_al_2021_Systematic_Map_Excel.xls contains a version of the systematic map in Microsoft Excel
DOI: 10.6084/m9.figshare.17205019
title: Additional file 3 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 3. WOS Search Records.zip is a compressed folder containing the results of our Web of Science searches. WOS_CC_Long_String_Search_Results.xlsm is a record of our search in Web of Science Core Collection using the expanded population search string, before any macros were applied. WOS_CC_Short_Search_Results.xlsm is a record of our search in Web of Science Core Collection using the shorter population search string, before any macros were applied. Applying_No_A_or_K_Macro.xlsm contains the macros used to identify articles in our Web of Science Core Collection search results indexed without abstracts or keywords and add those search results to the search results that used the short search string, and shows the results of applying those macros. Applying_Replace_Terms_Macro_CC.xlsm contains the macros used to identify articles that only used an intervention/exposure search term in an irrelevant context and shows the results after removing those articles. WOS_CC_for_Rayyan .csv contains the results of the pre-screened Web of Science Core Collection search, formatted for upload to Rayyan QCRI. WOS_ZR_Search_Results.xlsm is a record of our search in Web of Science Zoological record, before any macros were applied. Applying_Replace_Terms_ZR.xlsm contains the macros used to identify articles that only used an intervention/exposure search term in an irrelevant context and shows the results after removing those articles. Applying_Remove_dups_ZRCC.xlsm contains the macros used to remove articles that were found in both the Core Collection and the Zoological Record from the Zoological Record search results. WOS_ZR_for_Rayyan.csv contains the results of the pre-screened Web of Science Zoological Record search, formatted for upload to Rayyan QCRI. Documents in the folder Web of Science Core Collection Updated Search and Web of Sciences Zoological Record Updated Search show the equivalent information for the updated searches. Documents in the folder Blank Macro Workbooks are blank macro-enabled workbooks that can be used to apply our macros to any Web of Science Core Collection or Zoological Record search results.
DOI: 10.6084/m9.figshare.17205028
title: Additional file 4 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 4. Database_Search_Records.xls contains several sheets. The first sheet shows the database search records (date of search, screening platform, search string). The other sheets show the articles identified as potentially eligible at the title/abstract screening level, and reasons for exclusion if they were found ineligible at the full text level.A compressed file of PDFs and .doc files containing the raw search records is available upon request.
DOI: 10.6084/m9.figshare.17205019.v1
title: Additional file 3 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 3. WOS Search Records.zip is a compressed folder containing the results of our Web of Science searches. WOS_CC_Long_String_Search_Results.xlsm is a record of our search in Web of Science Core Collection using the expanded population search string, before any macros were applied. WOS_CC_Short_Search_Results.xlsm is a record of our search in Web of Science Core Collection using the shorter population search string, before any macros were applied. Applying_No_A_or_K_Macro.xlsm contains the macros used to identify articles in our Web of Science Core Collection search results indexed without abstracts or keywords and add those search results to the search results that used the short search string, and shows the results of applying those macros. Applying_Replace_Terms_Macro_CC.xlsm contains the macros used to identify articles that only used an intervention/exposure search term in an irrelevant context and shows the results after removing those articles. WOS_CC_for_Rayyan .csv contains the results of the pre-screened Web of Science Core Collection search, formatted for upload to Rayyan QCRI. WOS_ZR_Search_Results.xlsm is a record of our search in Web of Science Zoological record, before any macros were applied. Applying_Replace_Terms_ZR.xlsm contains the macros used to identify articles that only used an intervention/exposure search term in an irrelevant context and shows the results after removing those articles. Applying_Remove_dups_ZRCC.xlsm contains the macros used to remove articles that were found in both the Core Collection and the Zoological Record from the Zoological Record search results. WOS_ZR_for_Rayyan.csv contains the results of the pre-screened Web of Science Zoological Record search, formatted for upload to Rayyan QCRI. Documents in the folder Web of Science Core Collection Updated Search and Web of Sciences Zoological Record Updated Search show the equivalent information for the updated searches. Documents in the folder Blank Macro Workbooks are blank macro-enabled workbooks that can be used to apply our macros to any Web of Science Core Collection or Zoological Record search results.
DOI: 10.6084/m9.figshare.17205028.v1
title: Additional file 4 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 4. Database_Search_Records.xls contains several sheets. The first sheet shows the database search records (date of search, screening platform, search string). The other sheets show the articles identified as potentially eligible at the title/abstract screening level, and reasons for exclusion if they were found ineligible at the full text level.A compressed file of PDFs and .doc files containing the raw search records is available upon request.
DOI: 10.6084/m9.figshare.17205031
title: Additional file 5 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 5. Website_Search_Records.xls contains three sheets. The first sheet lists the website searched the search string used in Google or the URL of each page within the website that was searched. The second sheet lists the number of eligible articles found on each website. The third sheet lists the URLs of articles found eligible at the title/abstract level, the exclusion reasons for any articles excluded at the full text level, and the citations for any articles found eligible at the full text level.
DOI: 10.6084/m9.figshare.17205031.v1
title: Additional file 5 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 5. Website_Search_Records.xls contains three sheets. The first sheet lists the website searched the search string used in Google or the URL of each page within the website that was searched. The second sheet lists the number of eligible articles found on each website. The third sheet lists the URLs of articles found eligible at the title/abstract level, the exclusion reasons for any articles excluded at the full text level, and the citations for any articles found eligible at the full text level.
DOI: 10.6084/m9.figshare.17205034
title: Additional file 6 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 6. Google_Scholar_Search_Results.xls contains multiple sheets. The first sheet shows the combined results from the Google Scholar searches after removing duplicates and formatting them for upload to Rayyan QCRI. The other four sheets show the raw Google Scholar search results, before removal of duplicates.
DOI: 10.6084/m9.figshare.17205034.v1
title: Additional file 6 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 6. Google_Scholar_Search_Results.xls contains multiple sheets. The first sheet shows the combined results from the Google Scholar searches after removing duplicates and formatting them for upload to Rayyan QCRI. The other four sheets show the raw Google Scholar search results, before removal of duplicates.
DOI: 10.6084/m9.figshare.17205037
title: Additional file 7 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 7. Bibliographic_Checking.xls has several sheets. On the READ ME sheet, we explained how we selected reviews for bibliographic checking and describes our scoring system. All_Reviews_From_Rayyan lists all articles found ineligible at the full text level because they were reviews. This sheet also contains the scores assigned to each review. Reviews_for_biblio_checking lists the reviews selected for bibliographic checking. The next 5 sheets list all of the relevant references found in each review and whether or not they were found by our search. The final sheet shows the reasons why some of the references in the review of aggregation/mortality were missed.
DOI: 10.6084/m9.figshare.17205037.v1
title: Additional file 7 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 7. Bibliographic_Checking.xls has several sheets. On the READ ME sheet, we explained how we selected reviews for bibliographic checking and describes our scoring system. All_Reviews_From_Rayyan lists all articles found ineligible at the full text level because they were reviews. This sheet also contains the scores assigned to each review. Reviews_for_biblio_checking lists the reviews selected for bibliographic checking. The next 5 sheets list all of the relevant references found in each review and whether or not they were found by our search. The final sheet shows the reasons why some of the references in the review of aggregation/mortality were missed.
DOI: 10.6084/m9.figshare.17205043
title: Additional file 9 of Effects of artificial light on bird movement and distribution: a systematic map

description: Additional file 9. Articles_Excluded_at_Full_Text.xls has three sheets. The first lists the articles screened on Rayyan QCRI excluded at the full text level, with reasons for exclusion. The second contains the list of articles screen on other platforms excluded at full text, with reasons for exclusion. The third shows a table of the number of studies excluded for each reason. The fourthlists all articles that were excluded from the map because we could not access their full texts.