cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.fxpnvx0wh
title: The Effects of Roundup™ on Benthic Microbial Assemblages

description: Given the wide usage of Roundup, a common herbicide, the impacts of its
 presence in ecological communities are of great interest. Many studies
 have investigated the effects of glyphosate, the active ingredient in
 Roundup, on different factions of an ecosystem including on animals,
 plants, microorganisms, and nutrients. The current study expanded upon
 these works using Roundup instead of glyphosate to provide a realistic
 application in which to observe the development of microbial assemblages
 and nutrient composition in two different habitats. Winogradsky columns
 were prepared using benthic material from a ditch and a pond. Varying
 concentrations of Roundup were introduced to the columns at the beginning
 of the study and microbial growth and nutrient compositions from each
 column were measured weekly. The results indicate that the presence of
 Roundup has varying effects on microorganisms and nutrients. While
 photosynthetic microbes were negatively impacted, a shift in the microbial
 composition to heterotrophic microbes indicates that these microorganisms
 were able to utilize some ingredients in Roundup as a nutrient source.
 Additionally, the temporal analysis of nutrient compositions indicated
 that microbes metabolize glyphosate starting with the phosphate moiety
 even when the other compounds in Roundup are present. While these trends
 were observed in both benthic habitats, the composition of the ecological
 community can affect its ability to utilize the ingredients in Roundup as
 a nutrient source.
description: Please see the published Methods for complete data collection
 processes
description: This is a file that can be opened with Microsoft Excel. It has
 three tabs for water chemistry, bacteria color measurements, and DOC
 absorbance and conversion to concentration.
DOI: 10.6078/d1zq53
title: Carbon-sink potential of continuous alfalfa agriculture lowered by short-term nitrous oxide emission events

description: Alfalfa is the most widely grown forage crop worldwide and is thought to
 be a significant carbon sink due to high productivity, extensive root
 systems, and nitrogen-fixation. However, these conditions may increase
 nitrous oxide (N2O) emissions thus lowering the climate change mitigation
 potential. We used a suite of long-term automated instrumentation and
 satellite imagery to quantify patterns and drivers of greenhouse gas
 fluxes in a continuous alfalfa agroecosystem in California. We show that
 this continuous alfalfa system was a large N2O source (624 ± 28 mg N2O m2
 y-1), offsetting the ecosystem carbon (carbon dioxide (CO2) and methane
 (CH4)) sink by up to 14% annually. Short-term N2O emissions events (i.e.
 hot moments) accounted for &lt; 1% of measurements but up to 57% of
 annual emissions. Seasonal and daily trends in rainfall and irrigation
 were the primary drivers of hot moments of N2O emissions. Significant
 coherence between satellite-derived photosynthetic activity and N2O fluxes
 suggested plant activity was an important driver of background emissions.
 Combined data show annual N2O emissions can significantly lower the
 carbon-sink potential of continuous alfalfa agriculture.
DOI: 10.15468/dl.45r4zj
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "TaxonKey is Leptophlebia marginata"
 ]
}

 The dataset includes 96 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003392-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.1ns1rn8z1
title: Growth and metamorphosis data from a rearing experiment on Rana ornativentris

description: Amphibian larvae exhibit high plasticity in response to environmental
 conditions such as food and temperature, determining the timing and size
 of metamorphosis. While extensive research has been conducted on the
 mechanisms governing when and at what size metamorphosis occurs, specific
 models indicating species-specific metamorphic points have not been
 established. To create such a model, we conducted a rearing experiment
 using Rana ornativentris larvae as an example. We reared the
 larvae under different feeding conditions, monitored their growth, and
 recorded the number of days to metamorphosis and the body size at
 metamorphosis.
description: <em>R. ornativentris</em> tadpoles were reared in a laboratory to obtain
 data on individual growth curves and consequential actual size and age at
 metamorphosis. Variations in aquatic growth rates were created by varying
 the amount of available food. Two egg
 masses were collected from the field on April 9, 2017 and incubated until
 they hatched. When tadpoles reached Gosner’s stage 25 (Gosner 1960) on
 April 17, they were individually placed in a plastic container (129-mm
 diameter, 72-mm height) with 300 mL of aged tap water (day 0). Individuals
 were randomly assigned to one of the six food treatment groups (shown
 below) with seven individuals per group. In total, six or nine individuals
 that hatched from each egg mass were photographed with a scale to estimate
 the initial body weight using a formula for the relationship between
 snout-vent-length (SVL) and body weight obtained in another study (W(mg) =
 206 × SVL(mm)<sup>2.85</sup>, Iwai et al. 2019). Containers
 were incubated (MIR-254-PJ or MIR-554-PJ, Panasonic, Japan) at a constant
 temperature (18 °C) and a 12:12 h light:dark
 cycle.  Commercial fish food (Hikari-haiga, Kyorin,
 Japan) was crushed to a powder, mixed with a 1% agar solution, and placed
 in a Petri dish of 84 mm diameter. Food pellets were bored using straws of
 different diameters, and a fixed amount of food (1.6, 2.5, 3.2, 4.1, 5.0
 mg/day, and ad libitum) per individual was supplied every three or four
 days when the water was changed and the containers cleaned. Body weight
 was measured once every 3−21 days.  Metamorphosis was defined as the emergence of
 the first forelimb and was inspected daily.
description: # Growth and metamorphosis data from a rearing experiment on Rana
 ornativentris ## Description of the Data and file structure Sheet
 "weight" Growth data for rearing experiment of Rana
 ornativentris tadpoles. The first row shows individual ID, and the first
 column shows the time (day). Data are shown as body weight (mg). Sheet
 "Larval period" Larval period of Rana ornativentris tadpoles.
 The first column shows individual ID, and the second column shows the
 larval period (day). There were six levels of food conditions. A: 1.6
 mg/day B: 2.5 mg/day C: 3.2 mg/day D: 4.1 mg/day E: 5.0 mg/day F: ad
 libitum The first letter of each ID name represents the food condition. ##
 Sharing/access Information N/A
DOI: 10.5061/dryad.p2ngf1vv8
title: Reversing declines in farmland birds: how much agri-environment provision is needed at farm and landscapes scales?

description: 1) Agri-environment schemes (AES) are the primary policy mechanism for
 addressing farmland biodiversity declines across Europe. Despite previous
 studies on the impacts of AES on biodiversity, there is little empirical
 evidence on the scale of provision required to reverse declines. 2) Across
 three regions of lowland England with contrasting farm systems (arable,
 pastoral, mixed) we estimated avian Population Growth Rates (PGRs) on
 farmland with high AES provision (‘higher-tier’: average bird-friendly
 option cover = 7.4%), low AES provision (‘lower-tier’: 2.3%), and no
 bird-friendly AES (‘no AES’). Ten-year PGRs were derived for 24 species
 and three multi-species groups comprising farmland-associated species
 (‘farmland birds’), species of conservation concern (‘priority birds’),
 and species restricted to farmland (‘specialist birds’). We used PGRs to
 simulate the proportion of the regional farmland landscape that would have
 to be assigned to higher- and lower-tier agreements to stabilise or
 increase populations. 3) In the arable and pastoral regions, 13/23 and
 13/22 species respectively had more positive PGRs under higher-tier AES
 than on no AES farmland (none had more negative PGRs), compared to 4/22
 (positive) and 1/22 (negative) in the mixed region. Only 2-4 species per
 region exhibited more positive PGRs under lower-tier AES compared to no
 AES farmland. 4) Multi-species PGRs in the arable and pastoral regions
 increased from no AES (strong decline), to lower-tier (decline or
 stability) to higher-tier (moderate or strong increase). There was no
 overall AES effect in the mixed region. 5) To increase regional farmland
 bird populations by 10% over 10-years, 47% and 26% of the farmed landscape
 would need to be devoted to higher-tier agreements in arable and pastoral
 landscapes respectively. This falls to 34% and 17% when higher-tier is
 targeted at localities supporting higher abundances of target species, and
 to 29% and 10% when 30% of the farmed landscape is also devoted to
 lower-tier. Priority and specialist birds require higher provision levels.
 6) Policy implications. Where farmland bird recovery is an AES objective,
 farms should prioritise higher-tier agreement delivery over lower-tier.
 Farmland bird responses to AES provision are likely to vary regionally but
 careful targeting will reduce the amount needed in the landscape.
description: Full details of the data collection methods can be found in
 the <em>Journal of Applied Ecology</em> paper.
description: The accompanying README.txt file provides usage notes for the
 three .csv files.
DOI: 10.5061/dryad.zgmsbccgb
title: Data for: Assessment of estimating selection coefficients in non-Wright-Fisher populations

description: Selection coefficients are a useful parameter in evolutionary studies.
 Given that most tools to estimate selection coefficients assume population
 dynamics of a Wright-Fisher model, but most real-world populations violate
 Wright-Fisher model assumptions, the accuracy of these tools under more
 realistic scenarios of evolution is debatable. In this study, we test a
 common tool (WFABC) to assess estimates of selection coefficients in
 simulated populations which do and do not adhere to typical Wright-Fisher
 assumptions. Specifically, we look at simulated non-Wright-Fisher
 populations which experience evolutionary rescue. We see that fluctuating
 demography plays an important role in our ability to infer natural
 selection. Increased rates of sweeps due to bottlenecks increase error in
 estimates of selection by up to 5.45 times relative to typical WF-adhering
 populations. In a moderately polygenic model of adaptation, more severe
 bottlenecks produce harder sweeps such that selected sites interact with
 surrounding sites, including other selected sites, to increase error in
 estimates. This may lead to an erroneous excess of the estimated number of
 sites under selection within a population experiencing evolutionary
 rescue. Our results place an emphasis on thoughtful analyses of estimates
 of selection obtained from real-world populations which don’t adhere to
 typical model assumptions.
description: The population demographic and genomic time-series data was
 generated solely through simulations using the SLiM 3.0 software. The data
 was then input into WFABC software to generate estimates of selection
 coefficients and subsequently analyzed in R.
description: Data can be accessed using R, python 3, and SLiM 3.0.
DOI: 10.5061/dryad.9cnp5hqnw
title: 4500 years of morphological diversification in Western Europe wild boars (Sus scrofa) and the consequences of the Neolithic transition

description: Evolutionary biologists have recently solicited archaeologists to help
 document and understand the morphological evolution of animals in response
 to human activities and, more globally, to help reconstruct the history
 and significance of the anthropogenic impact on worldwide ecosystems.
 Artificial selection associated with domestication is the best-known
 example of a major anthropogenic morphological evolution preserved in the
 archaeological record. However, the impact of the domestication process
 and dispersal on the morphological evolution of animals has been far less
 explored. To fill this gap, we focused on 5,000 years of Neolithic
 transition in Western Europe – a major anthropogenic ecological
 disturbance involving landscape modification and the translocation of
 domestic mammals. Using geometric morphometrics on key phenotypic markers
 preserved in the archaeological record associated with isotopic studies,
 we explored how and according to which cultural drivers the Neolithic
 niche construction has influenced the morphological evolution of wild
 boars (Sus scrofa). The decoupling of size and shape components from bone
 morphological variation has facilitated the identification of several
 processes of phenotypic diversification of Sus scrofa in response to human
 behaviour during the Neolithic transition in Western Europe.
DOI: 10.15468/dl.cur47v
title: Occurrence Download

description: A dataset containing 1138047 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence)",
 "Country is one of (Congo, Democratic Republic of the, Congo, Cameroon, Gabon, Equatorial Guinea, Central African Republic)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta",
 "Year 1950-2026"
 ]
}

 The dataset includes 1138047 records from 210 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003287-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9afhcx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Lepidothrix nattereri (P.L.Sclater, 1865))",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016315-250525065834625/datasets/export for details.
DOI: 10.15468/dl.fgwrpy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Lepidothrix nattereri (P.L.Sclater, 1865))",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016316-250525065834625/datasets/export for details.
DOI: 10.15468/dl.eakyv9
title: Occurrence Download

description: A dataset listing the 443962 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset's 443962 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016305-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kjta3m
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Lepidothrix nattereri (P.L.Sclater, 1865))",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016318-250525065834625/datasets/export for details.
DOI: 10.15468/dl.fr3qvq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia macrops Maul, 1957",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((17.8454 -33.8607,17.8905 -34.1504,17.9648 -34.1504,17.9648 -25.1504,14.3389 -25.1504,14.4725 -26.5137,15.1589 -28.0715,16.3623 -29.3594,16.8947 -30.6715,17.7447 -31.9232,17.8096 -32.2341,17.5192 -32.4186,17.3515 -32.9009,17.8454 -33.8607))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010194-250525065834625/datasets/export for details.
DOI: 10.57967/hf/5681
title: Acmmm2025_video_benchmark
DOI: 10.15468/dl.eyqjs2
title: Occurrence Download

description: A dataset containing 41775 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Bromus madritensis"
 ]
}

 The dataset includes 41775 records from 646 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049645-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18739/a2gb1xj8j
title: Global Vegetation Greenness Normalized Difference Vegetation Index (NDVI) from Advanced Very High Resolution Radiometer (AVHRR) Global Inventory Modeling and Mapping Studies-3rd Generation (GIMMS-3G+), 1981-2022

description: This dataset holds the Global Inventory Modeling and Mapping Studies-3rd Generation V1.2 (GIMMS-3G+) data for the Normalized Difference Vegetation Index (NDVI). NDVI was based on corrected and calibrated measurements from Advanced Very High Resolution Radiometer (AVHRR) data with a spatial resolution of 0.0833 degree and global coverage for 1982 to 2022. Maximum NDVI values are reported within twice monthly compositing periods (two values per month). The dataset was assembled from different AVHRR sensors and accounts for various deleterious effects, such as calibration loss, orbital drift, and volcanic eruptions. The data are provided in NetCDF format. This dataset provides one of the longest continuous records of global vegetation productivity. It has been widely used by the remote sensing community and has supported many scientific publications.
DOI: 10.15468/dl.unw22x
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Panthera tigris (Linnaeus, 1758))",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016281-250525065834625/datasets/export for details.
DOI: 10.15468/dl.y9cm3k
title: Occurrence Download

description: A dataset containing 179334 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Year is greater than or equal to 1980",
 "TaxonKey is Aesculus hippocastanum"
 ]
}

 The dataset includes 179334 records from 1113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035245-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17616217
title: Pairwise Alignments of 18 Spider Genomes from NCBI
DOI: 10.5281/zenodo.17616218
title: Pairwise Alignments of 18 Spider Genomes from NCBI
DOI: 10.15468/dl.7jphzx
title: Occurrence Download

description: A dataset containing 8834 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-110.6688 24.74913, -110.5188 24.74913, -110.5188 24.89913, -110.6688 24.89913, -110.6688 24.74913))"
 ]
}

 The dataset includes 8834 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035277-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3apw4u
title: Occurrence Download

description: A dataset containing 113582 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lynx lynx"
 ]
}

 The dataset includes 113582 records from 256 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035211-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jf44py
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mystus wolffii",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035279-251025141854904/datasets/export for details.