cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5959768.v1
title: Paralytic shellfish toxins in Australian Southern Rock Lobster (<i>Jasus edwardsii</i>): Acute human exposure from consumption of hepatopancreas

description: Paralytic shellfish toxins (PST) were identified in the hepatopancreas of Southern Rock Lobster (<i>Jasus edwardsii</i>) during <i>Alexandrium tamarense</i> blooms in Tasmania, Australia. Human health risk from PST in lobsters was unknown – this study assesses exposure to PST from hepatopancreas consumption. Lobster hepatopancreas samples collected during blooms (n = 181) were mostly positive for PST (&gt;88%), the highest concentration was 4032 μg STX-2HCl eq/kg. Consumer exposure to PST was estimated using a 2-D Monte Carlo model. Mean PST intake (<i>pi</i>) from hepatopancreas consumption (raw and cooked) was below the lowest-observed-adverse-effect-level (LOAEL) for PST (&lt;2.0 μg/kg bw), however the 97.5th percentile <i>pi</i> for raw meals (2.64 μg/kg bw) exceeded the LOAEL. A total of 4.1% of raw hepatopancreas meals were estimated to exceed the LOAEL. Lobster hepatopancreas consumption during <i>A. tamarense</i> blooms may be concerning for a small proportion of consumers, particularly those that eat large meals at the bloom peak. However, when the model was re-run with PST concentration capped at the bivalve regulatory limit (800 μg STX-2HCl eq/kg) <i>pi</i> decreased, with the 97.5th percentile values below the LOAEL. Thus, issuing public health warnings and harvesting restrictions for lobsters when levels exceed 800 μg STX-2HCl eq/kg would reduce the probability of illness occurring.
DOI: 10.6084/m9.figshare.5956720
title: gamma=5/3, eta=5/2

description: gamma=5/3, eta=5/2
DOI: 10.6084/m9.figshare.5956720.v1
title: gamma=5/3, eta=5/2

description: gamma=5/3, eta=5/2
DOI: 10.6084/m9.figshare.5956666
title: Transgenerational induction of wild radish palatability trials results

description: Results from three palatability trials. Leaf tissue from wild radish plants with differing histories of herbivore induction (induced or non-induced ("I" or "N") for grandparents, parents, and current generation) presented to either a generalist slug or a specialist caterpillar. Leaf weight consumed measured after 18 hours as well as weight of the herbivore as a covariate.
DOI: 10.6084/m9.figshare.5956666.v1
title: Transgenerational induction of wild radish palatability trials results

description: Results from three palatability trials. Leaf tissue from wild radish plants with differing histories of herbivore induction (induced or non-induced ("I" or "N") for grandparents, parents, and current generation) presented to either a generalist slug or a specialist caterpillar. Leaf weight consumed measured after 18 hours as well as weight of the herbivore as a covariate.
DOI: 10.6084/m9.figshare.5956633
title: Historical and Economic Dictionary

description: The historical and economic dictionary contains some dictionary articles devoted to the development of the economy in our and other countries. The articles reveal the main content of terms and their meaning. This study is a collection of data that includes an extensive list of economic terms.
DOI: 10.6084/m9.figshare.5956564
title: Does Source Code Quality Reflect the Ratings of Apps? - Appendix and Replication Package

description: In the past, bad code quality has been associated with higher bug-proneness. At the same time, the main reason why mobile users negatively rate an app is due to the presence of bugs leading to crashes. In this paper, we preliminarily investigate the extent to which code quality metrics can be exploited to predict the commercial success of mobile apps. Key results suggest the existence of a relation between code quality and commercial success; We found that inheritance and information hiding metrics represent important indicators and therefore should be carefully monitored by developers.<br>
DOI: 10.6084/m9.figshare.5956564.v1
title: Do High-Rate App Developers Care More About Source Code Quality? - Appendix

description: In this paper, we conduct an assessment study on the predictive power of code quality metrics in order to determine the commercial success of mobile apps. Key results show how inheritance metrics should be carefully monitoring in order to maintain an high rate of apps.
DOI: 10.22023/mdx.5956534
title: SUCCESS project related overview of system working through live scenarios

description: The SUCCESS EU project focuses on "Secure Accessibility for the Internet of Things".<br><br>This repository contains videos explaining generic system behaviour in selected scenarios of the SUCCESS system.<br><br>The scenarios refer to typical situations of dementia sufferers (wandering, unhealthy eating and unhealthy sleeping) and how the system is capable to detect them.<br><br>The system is at early stages and the scenarios are simple to illustrate the system can detect them. <br><br>
DOI: 10.22023/mdx.5956534.v1
title: SUCCESS project related overview of system working through live scenarios

description: The SUCCESS EU project focuses on "Secure Accessibility for the Internet of Things".<br><br>This repository contains videos explaining generic system behaviour in selected scenarios of the SUCCESS system.<br><br>The scenarios refer to typical situations of dementia sufferers (wandering, unhealthy eating and unhealthy sleeping) and how the system is capable to detect them.<br><br>The system is at early stages and the scenarios are simple to illustrate the system can detect them. <br><br>
DOI: 10.6084/m9.figshare.5956435
title: Signals in the Aetosauria matrix by W. G. Parker (2016)

description: This file set is just a demonstration of how to infer 10000 (quick-and-dirty) bootstrap replicates (under parsimony or other optimality criteria) related to a Q&A to Parker (2016) <br>– see https://peerj.com/questions/1939-computational-constraints/ – to bypass the mentioned computational constraints.<br><br>It includes <br><br>A NEXUS-formatted (optimised for PAUP*) template file showing my standard code lines for PAUP* framing the data matrix of Parker (2016), and an extra blog for running a basic bootstrapping analysis under the maximum-parsimony and least-squares optimality criteria — <b>Aetosauria.nex<br></b><br>An archive (http://www.7-zip.org/) including splits-NEXUS-formatted bootstrap consensus networks inferred from both bootstrap pseudoreplicate samples with SplitsTree using a cut-off of 20% (only alternative edge-bundles are shown that occur in more than 20% of the bootstrap pseudoreplicates). See also ReadMe.txt included in the archive — <b>Results.7z<br><br>Note for re-use</b>: <br>When (re-)using the data (the morphological data matrix), make sure to cite and read the original paper by W. G. Parker — https://peerj.com/articles/1583/<br><br>For those who just re-use my codelines (and not any files included in the archive), feel free to cite or not.this figshare submission. When you use the files in the archive, you should cite this figshare submission and the original paper that provided the open data <br> <br>
DOI: 10.6084/m9.figshare.5956435.v2
title: Signals in the Aetosauria matrix by W. G. Parker (2016)

description: This file set is just a demonstration of how to infer 10000 (quick-and-dirty) bootstrap replicates (under parsimony or other optimality criteria) related to a Q&A to Parker (2016) <br>– see https://peerj.com/questions/1939-computational-constraints/ – to bypass the mentioned computational constraints.<br><br>It includes <br><br>A NEXUS-formatted (optimised for PAUP*) template file showing my standard code lines for PAUP* framing the data matrix of Parker (2016), and an extra blog for running a basic bootstrapping analysis under the maximum-parsimony and least-squares optimality criteria — <b>Aetosauria.nex<br></b><br>An archive (http://www.7-zip.org/) including splits-NEXUS-formatted bootstrap consensus networks inferred from both bootstrap pseudoreplicate samples with SplitsTree using a cut-off of 20% (only alternative edge-bundles are shown that occur in more than 20% of the bootstrap pseudoreplicates). See also ReadMe.txt included in the archive — <b>Results.7z<br><br>Note for re-use</b>: <br>When (re-)using the data (the morphological data matrix), make sure to cite and read the original paper by W. G. Parker — https://peerj.com/articles/1583/<br><br>For those who just re-use my codelines (and not any files included in the archive), feel free to cite or not.this figshare submission. When you use the files in the archive, you should cite this figshare submission and the original paper that provided the open data <br> <br>
DOI: 10.6084/m9.figshare.5956435.v1
title: Signals in the Aetosauria matrix by W. G. Parker (2016)

description: This file set is just a demonstration of how to infer 10000 (quick-and-dirty) bootstrap replicates (under parsimony or other optimality criteria) related to a Q&A to Parker (2016) <br>https://peerj.com/questions/1939-computational-constraints/) to bypass the supposed computational constraints.<br><br>It includes <br><br>A NEXUS-formatted (optimised for PAUP*) template file showing my standard code lines for PAUP* framing the data matrix of Parker (2016), and running a basic bootstrapping analysis under the maximum-parsimony and least-squares optimality criteria — Aetosauria.nex<br><br>An archive including splits-NEXUS-formatted bootstrap consensus networks inferred from both bootstrap pseudoreplicate samples with SplitsTree using a cut-off of 20% (only alternative edge-bundles are shown that occur in more than 20% of the bootstrap pseudoreplicates). See also ReadMe.txt included in the archive — Results.zip<br><br><b>Note for re-use</b>: <br>When (re-)using the data (the morphological data matrix), make sure to cite and read the original paper by W. G. Parker — https://peerj.com/articles/1583/<br><br>For those who just re-use my codelines (and not any files included in the archive), feel free to cite or not.this figshare submission. When you use the files in the archive, you should cite this figshare submission and the original paper that provided the open data <br> <br>
DOI: 10.6084/m9.figshare.5956423
title: Table S1. Geochronological constraint on the Cambrian Chengjiang biota, South China

description: Table S1: Zircon SIMS U–Pb data of 14CJ-2 and 14CJ-3 from Maotianshan Shale, eastern Yunnan Province, South China
DOI: 10.6084/m9.figshare.5956423.v1
title: Table S1. Geochronological constraint on the Cambrian Chengjiang biota, South China

description: Table S1: Zircon SIMS U–Pb data of 14CJ-2 and 14CJ-3 from Maotianshan Shale, eastern Yunnan Province, South China
DOI: 10.6084/m9.figshare.5956420
title: Table S2. Geochronological constraint on the Cambrian Chengjiang biota, South China

description: Table S2: CA–ID–TIMS zircon U–Pb data of sedimentary rocks from Maotianshan Shale in eastern Yunnan Province
DOI: 10.6084/m9.figshare.5956420.v1
title: Table S2. Geochronological constraint on the Cambrian Chengjiang biota, South China

description: Table S2: CA–ID–TIMS zircon U–Pb data of sedimentary rocks from Maotianshan Shale in eastern Yunnan Province
DOI: 10.6084/m9.figshare.5956399
title: Using floristics, modern systematics and phylogenetics for disentangling biodiversity hotspots across scales: a Mediterranean case study

description: Biodiversity comprises various levels of biological organisation. Global patterns of biodiversity are well established based on species occurrence. However, functional and historical processes underlying biodiversity patterns have been only recently approached. The increasingly active field of phylogenetics has allowed the rise of phylofloristic studies to help in elucidating the historical, evolutionary causes of plant biodiversity in addition to most commonly approached ecological correlates. Here, we review recent phylogeny-based studies disentangling the role of eco-geographic and historical factors on the biodiversity patterns of the Baetic–Rifan range and exemplify the use of barcoding to explore the evolutionary assembly of woody flora in the Spanish Sierra Nevada mountain range super-hotspot. Our species-level DNA barcoding approach resulted in a phylogeny potentially improving refinement of hypotheses in comparison with previous approaches based on phylogenies at genus level, and providing insights into the woody flora of Sierra Nevada subjected to systematic discussion. We show that the roles of elevation and substrate in biodiversity distribution vary according to the biodiversity component considered and also between endemic and non-endemic flora. We aim to illustrate how modern methods can further our understanding of the mechanisms underlying the assemblage of species and, consequently, the conservation of biodiversity.
DOI: 10.6084/m9.figshare.5956399.v1
title: Using floristics, modern systematics and phylogenetics for disentangling biodiversity hotspots across scales: a Mediterranean case study

description: Biodiversity comprises various levels of biological organisation. Global patterns of biodiversity are well established based on species occurrence. However, functional and historical processes underlying biodiversity patterns have been only recently approached. The increasingly active field of phylogenetics has allowed the rise of phylofloristic studies to help in elucidating the historical, evolutionary causes of plant biodiversity in addition to most commonly approached ecological correlates. Here, we review recent phylogeny-based studies disentangling the role of eco-geographic and historical factors on the biodiversity patterns of the Baetic–Rifan range and exemplify the use of barcoding to explore the evolutionary assembly of woody flora in the Spanish Sierra Nevada mountain range super-hotspot. Our species-level DNA barcoding approach resulted in a phylogeny potentially improving refinement of hypotheses in comparison with previous approaches based on phylogenies at genus level, and providing insights into the woody flora of Sierra Nevada subjected to systematic discussion. We show that the roles of elevation and substrate in biodiversity distribution vary according to the biodiversity component considered and also between endemic and non-endemic flora. We aim to illustrate how modern methods can further our understanding of the mechanisms underlying the assemblage of species and, consequently, the conservation of biodiversity.
DOI: 10.6084/m9.figshare.5956348
title: liu-temporal-processing-dataset

description: Behavioral analysis processed dataset accompanying the paper "Temporal processing and context dependency in *C. elegans* mechanosensation"<br>See README.md for more details.
DOI: 10.6084/m9.figshare.5956348.v1
title: liu-temporal-processing-dataset

description: Behavioral analysis processed dataset accompanying the paper "Temporal processing and context dependency in *C. elegans* mechanosensation"<br>See README.md for more details.
DOI: 10.6084/m9.figshare.5956261
title: Data_IEEE24-NGS20-DHS14

description: This file is the network parameters of case 2, which is composed of IEEE RTS 24-node system, NGS 20- node system and 14-node district heating system.
DOI: 10.6084/m9.figshare.5956261.v1
title: Data_IEEE24-NGS20-DHS14

description: This file is the network parameters of case 2, which is composed of IEEE RTS 24-node system, NGS 20- node system and 14-node district heating system.
DOI: 10.6084/m9.figshare.5956183
title: Data_IEEE9-NGS6-DHS7

description: This file is the network parameters of case 1, which is composed of IEEE 9-node system, NGS 6-node system and 7-node district heating system.
DOI: 10.6084/m9.figshare.5956141
title: Experiences of volunteers working in deployable laboratories in West Africa during the Ebola outbreak

description: Dataset with the experiences of volunteers working in deployable laboratories in West Africa during the Ebola outbreak
DOI: 10.6084/m9.figshare.5956141.v1
title: Experiences of volunteers working in deployable laboratories in West Africa during the Ebola outbreak

description: Dataset with the experiences of volunteers working in deployable laboratories in West Africa during the Ebola outbreak
DOI: 10.6084/m9.figshare.5956108
title: Data for the movement ecology part of Dahirel et al 2016 Journal of Zoology

description: dataset and metadata for the movement ecology part of the following paper <br>(see metadata file and article for complete information)<br><br>Article: Potential syndromes linking dispersal and reproduction in the hermaphrodite land snail Cornu aspersum<br>Authors: Dahirel, Maxime; Ansart, Armelle; Madec, Luc<br>Journal of Zoology (2016)<br>doi:10.1111/jzo.12328<br><br>
DOI: 10.6084/m9.figshare.5956066
title: Molecular basis for governing the morphology of type I collagen fibrils by Osteomodulin

description: Dataset of main figures of "Molecular basis for governing the morphology of type I collagen fibrils by Osteomodulin"
DOI: 10.6084/m9.figshare.5956066.v1
title: Molecular basis for governing the morphology of type I collagen fibrils by Osteomodulin

description: Dataset of main figures of "Molecular basis for governing the morphology of type I collagen fibrils by Osteomodulin"
DOI: 10.6084/m9.figshare.5956006
title: Supplementary Material for: Economy of Standards: European Association of Urology Guideline Changes Influence Treatment Costs in Stage I Testicular Cancer Patients

description: <b><i>Objective:</i></b> The study aimed to calculate direct medical costs (DMC) during the first year of diagnosis and to evaluate the impact of guideline changes on treatment costs in clinical stage (CS) I testicular germ cell tumor (TGCT) patients in a German healthcare system. <b><i>Materials and Methods:</i></b> Healthcare expenditures as DMC during the first year of diagnosis for 307 TGCT patients in CS I treated at our institution from 1987 to 2013 were calculated from the statutory health insurance perspective using patient level data. Three periods were defined referring to the first European Association of Urology (EAU) guideline in 2001 as well as to subsequent major guideline changes in 2005 and 2010. Data source for cost calculations were the German Diagnosis Related Groups system for inpatient stays (version 2014) and the German system for reimbursement of outpatient care (EBM – Einheitlicher Bewertungsmaßstab, edition 2014). <b><i>Results:</i></b> During our 25 years of study period, mean DMC in the first year after diagnosis for the entire cohort of TGCT patients in CS I almost halved from EUR 13.000 to EUR 6.900 (<i>p</i> &lt; 0.001). From 1987 to 2001, DMC for CS I seminomatous germ cell tumor (SGCT) patients were EUR 13.790 ± 4.700. From 2002 to 2010, mean costs were EUR 10.900 ± 5.990, and from 2011 to 2013, mean costs were EUR 5.190 ± 3.700. For CS I non-seminomatous germ cell tumor (NSGCT) patients, from 1987 to 2001, mean DMC were EUR 11.650 ± 5.690. From 2002 to 2010, mean costs were EUR 11.230 ± 5.990, and from 2011 to 2013, mean costs were EUR 11.170 ± 7.390. Follow-up examinations became less frequent over time, which caused a significant cost reduction for NSGCT (<i>p</i> = 0.042) while costs remained stable for SGCT. When adding costs of relapse treatment, active surveillance (AS) was the most cost-effective adjuvant treatment option in CS I NSGCT whereas one course carboplatin or AS caused similar expenditures in SGCT patients. <b><i>Conclusion:</i></b> The introduction of the EAU guidelines in 2001 caused a decrease in DMC in CS I seminoma patients. This cost reduction mainly took place due to the declining importance of radiation therapy. No substantial changes were seen in patients with CS I NSGCT. Costs for follow-up care also diminished, but to a lesser degree. Even when considering expenditures for relapse treatment, AS remained cost-effective in CS I TCGT patients. Our data show that evidence-based medicine in TGCT can reduce DMC in the first year after diagnosis.
DOI: 10.6084/m9.figshare.5956006.v1
title: Supplementary Material for: Economy of Standards: European Association of Urology Guideline Changes Influence Treatment Costs in Stage I Testicular Cancer Patients

description: <b><i>Objective:</i></b> The study aimed to calculate direct medical costs (DMC) during the first year of diagnosis and to evaluate the impact of guideline changes on treatment costs in clinical stage (CS) I testicular germ cell tumor (TGCT) patients in a German healthcare system. <b><i>Materials and Methods:</i></b> Healthcare expenditures as DMC during the first year of diagnosis for 307 TGCT patients in CS I treated at our institution from 1987 to 2013 were calculated from the statutory health insurance perspective using patient level data. Three periods were defined referring to the first European Association of Urology (EAU) guideline in 2001 as well as to subsequent major guideline changes in 2005 and 2010. Data source for cost calculations were the German Diagnosis Related Groups system for inpatient stays (version 2014) and the German system for reimbursement of outpatient care (EBM – Einheitlicher Bewertungsmaßstab, edition 2014). <b><i>Results:</i></b> During our 25 years of study period, mean DMC in the first year after diagnosis for the entire cohort of TGCT patients in CS I almost halved from EUR 13.000 to EUR 6.900 (<i>p</i> &lt; 0.001). From 1987 to 2001, DMC for CS I seminomatous germ cell tumor (SGCT) patients were EUR 13.790 ± 4.700. From 2002 to 2010, mean costs were EUR 10.900 ± 5.990, and from 2011 to 2013, mean costs were EUR 5.190 ± 3.700. For CS I non-seminomatous germ cell tumor (NSGCT) patients, from 1987 to 2001, mean DMC were EUR 11.650 ± 5.690. From 2002 to 2010, mean costs were EUR 11.230 ± 5.990, and from 2011 to 2013, mean costs were EUR 11.170 ± 7.390. Follow-up examinations became less frequent over time, which caused a significant cost reduction for NSGCT (<i>p</i> = 0.042) while costs remained stable for SGCT. When adding costs of relapse treatment, active surveillance (AS) was the most cost-effective adjuvant treatment option in CS I NSGCT whereas one course carboplatin or AS caused similar expenditures in SGCT patients. <b><i>Conclusion:</i></b> The introduction of the EAU guidelines in 2001 caused a decrease in DMC in CS I seminoma patients. This cost reduction mainly took place due to the declining importance of radiation therapy. No substantial changes were seen in patients with CS I NSGCT. Costs for follow-up care also diminished, but to a lesser degree. Even when considering expenditures for relapse treatment, AS remained cost-effective in CS I TCGT patients. Our data show that evidence-based medicine in TGCT can reduce DMC in the first year after diagnosis.
DOI: 10.6084/m9.figshare.5955904
title: Binaural fusion involves weak interaural suppression (data)

description: Data from the paper, can be used to perform all reported statistics and model fitting<br>
DOI: 10.6084/m9.figshare.5955904.v1
title: Binaural fusion involves weak interaural suppression (data)

description: Data from the paper, can be used to perform all reported statistics and model fitting<br>