cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0785900.10fu
title: SH0785900.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.23935290
title: <b>Mechanistic insights on age-related changes in heart-aorta-brain hemodynamic coupling using a pulse wave model of the entire circulatory system</b>

description: Raw data corresponding to the manuscript titled : Mechanistic insights on age-related changes in heart-aorta-brain hemodynamic coupling using a pulse wave model of the entire circulatory system
DOI: 10.6084/m9.figshare.3761562.v2674
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.23935293
title: Adolescent and food away from Home.

description: This database was obtained from the website of the National Institute of Statistics and Informatics of Peru (INEI). This institution develops the National Household Survey, and different modules are shown on the page. This base corresponds only to the population of adolescenta and their home characteristics. The union of the health, education, housing and summary modules, are part of this data, they were joined through the merge command. The questionnaire is found on the same page by clicking on queries by survey and ENAHO.
DOI: 10.21227/e7zb-nb33
title: Dataset to Build Neural Network-Based Inverse Kinematics for NAO Robot Arms

description: The dataset to build the neural network-based inverse kinematics for NAO robot arms consists of input-output data pairs. The input data contains the end-effector position and orientation, while the output data contains a set of joint angular positions. The dataset that we published in this data repository contains 10000 data. For further applications, this dataset was split into the training dataset, validation dataset, and testing dataset. From 10000 data, 60% of data was allocated for the training dataset, 20% of data for the validation dataset, and the remaining 20% of data for the testing dataset. The training dataset is used to the train neural network. The validation dataset is utilized to validate the neural network’s performance during the training process. Meanwhile, the testing dataset is employed after the training process to test the performance of the trained neural network. It should be noted, this dataset can be applied for NAO H25 v3.3 or later.
DOI: 10.25345/c5h12vj4q
title: MassIVE MSV000092642 - Identification of LMAN1 and SURF4 dependent secretory cargoes
title: We used TMT-MS to compare protein abundance in conditioned media and cell lysates collected from control, LMAN1- or SURF4-deficient HuH7 cells to identify proteins that depend on these cargo receptors for secretion
DOI: 10.13020/3h6p-zn30
title: Data for Threading-the-Needle: Compatibilization of HDPE/iPP blends with butadiene-derived polyolefin block copolymers

description: Management of the plastic industry is a momentous challenge, one that pits enormous societal benefits against an accumulating reservoir of nearly indestructible waste. A promising strategy for recycling polyethylene (PE) and isotactic polypropylene (iPP), constituting roughly half the plastic produced annually worldwide, is melt blending for reformulation into useful products. Unfortunately, such blends are generally brittle and useless due to phase separation and mechanically weak domain interfaces. Recent studies have shown that addition of small amounts of semicrystalline PE-iPP block copolymers (ca. 1 wt%) to mixtures of these polyolefns results in ductility comparable to the pure materials. However, current methods for producing such additives rely on expensive reagents, prohibitively impacting the cost of recycling these inexpensive commodity plastics. Here, we describe an alternative strategy that exploits anionic polymerization of butadiene into block copolymers, with subsequent catalytic hydrogenation, yielding E and X blocks that are individually melt miscible with PE and iPP, where E and X are poly(ethylene-ran-ethylethylene) random copolymers with 6% and 90% ethylethylene repeat units, respectively. Cooling melt blended mixtures of PE and iPP containing 1 wt% of the triblock copolymer EXE of appropriate molecular weight, results in mechanical properties competitive with the component plastics. Blend toughness is obtained through interfacial topological entanglements of the amorphous X polymer and semicrystalline iPP, along with anchoring of the E blocks through cocrystallization with the PE homopolymer. Significantly, EXE can be inexpensively produced using currently practiced industrial scale polymerization methods, oﬀering a practical approach to recycling the world’s top two plastics.
description: The data folder contains all data of the figures in the article and SI appendix, including nuclear magnetic resonance (NMR), size exclusion chromatography (SEC), differential scanning calorimetry (DSC), rheology, tensile testing, scanning electron microscopy (SEM) and atomic force microscopy (AFM) data. See the readme.txt file for further details.
DOI: 10.24431/rw1k7du
title: A biologging database of mobula rays from the Gulf of California, Mexico, 2004-2014

description: These satellite tag data were collected on three species of Mobulid Ray (Mobula mobular, Mobula thurstoni, Mobula munkiana) in the southern Gulf of California between 2004 and 2014 to describe their movement patterns and habitat use. Wildlife Computers PAT tags (Mk10, MiniPAT, PAT4) were deployed. Data collected include: 1) date, time and location of PAT tag deployment; 2) date, time, and location of PAT tag pop-off; 3) light geolocation of PAT tag while at liberty; and 4) depth and temperature time series and histograms from PAT tags. Data provided in CSV and proprietary Wildlife Computers formats.
DOI: 10.25345/c5cc0v42t
title: MassIVE MSV000092643 - MHC-II peptidome of the CNS reveals endogenous guardian peptides
title: Mass spectrometry analysis of MHC-II peptidomes from several central nervous system tissues in mice.
DOI: 10.15482/usda.adc/1529418
title: Data from: The pathogenicity and transmission of live bird market H2N2 avian influenza viruses in chickens, Pekin ducks, and guinea fowl

description: Data are the individual group values for oral and cloacal virus shedding and antibody titers for reach treatment group from: Mo et al., The pathogenicity and transmission of live bird market H2N2 avian influenza viruses in chickens, Pekin ducks, and guinea fowl. Vet Mic 260:109180, 2021. https://doi.org/10.1016/j.vetmic.2021.109180
Methods: Six H2N2 low pathogenic avian influenza viruses from US LBMs were selected based on recency and to represent the different genotypes present in the live birds markets during the time period (i.e., the presence or absence of a NA stalk deletion): A/duck/PA/14-030488-5/2014 (Dk/PA/14), A/chicken/NY/16-032621-2/2016 (Ck/NY/16), A/chicken/CT/17-008911-4/2017 (Ck/CT/17), A/chicken/NY/18-002471-4/2018 (CK/NY/02471/18), A/chicken/NY/18-042097-3/2018 (Ck/NY/042097/18) and A/chicken/NY/19-012787-1/2019 (Ck/NY/19). Isolates were evaluated in White Leghorn chickens (Gallus gallus), guinea fowl (Numida meleagris) and Pekin ducks (Anas platyrhynchos). Chickens and guinea fowl were challenged at 4 weeks of age and Pekin ducks were challenged at 2 weeks of age with 6log10 of virus by the intra-choanal route. “Contact” birds, which were hatch-mates of the inoculated birds, were co-housed with the inoculated birds 24hrs post inoculation to evaluate transmission. Viral loads in OP and CL swabs collected at 2, 4, 7, 10, and 14 days post inoculation were determined by quantitative real-time reverse-transcriptase polymerase chain reaction (qRT-PCR). RNA was extracted from swabs using the MagMAX96 Viral RNA Isolation Kit (Thermo Fisher Scientific, Waltham, MA) and the KingFisher Flex Magnetic Particle Processing System (Thermo Fisher Scientific), with an additional wash step to remove inhibitors (Das et al., 2009). The qRT‐PCR for AIV detection was conducted based on the standard USDA M gene AIV qRT‐PCR procedure (Spackman et al., 2002) using an Applied Biosystems® 7500 Fast Real‐Time PCR system (Thermo Fisher Scientific). Cycle threshold (Ct) values were determined by the 7500 Fast Software v2.3. For relative quantification, Ct values were converted to titer equivalents based on the standard curve method (Larionov et al., 2005). Values were established from ten-fold dilutions of the same titrated stock of the virus used to challenge the birds. The limit of detection was determined to be 0.8Log10 per reaction. Serological testing for antibodies to the virus utilized the hemagglutination inhibition (HI) assays using homologous antigens were performed to quantify antibody responses with serum collected from chickens, guinea fowl and Pekin ducks at 14 dpi based on the standard protocol (OIE, 2019). HI titers were reported as reciprocal log2 titers, and titers greater than 3 log2 (1:8) were considered positive.
DOI: 10.5281/zenodo.8240096
title: MNT-1 HiC and H3K27ac HiChIP data

description: We performed Hi-C and H3K27ac HiChIP assays in MNT1 cells. Hi-C is a high-throughput method for detecting chromatin interactions at whole genome scale and is often used to identify topologically associating domains (TADs) in the nucleus. H3K27ac HiChIP can identify chromatin interactions enriched for H3K27ac, a histone modification associated with active promoters and enhancers. We performed bridge linker mediated Hi-C and H3K27ac HiChIP using double (Hae3+Alu1) as well as single (Hae3) enzyme digestion in MNT-1 cells. For Hi-C_Hae3+Alu1, Hi-C_Hae3, HiChIP_Hae3+Alu1, and HiChIP_Hae3 assays, respectively, we sequenced 399 million (M), 430 M, 257 M, and 181 M paired reads and obtained 299 M, 305 M, 151 M, and 94 M valid interactions (cis-pairs &gt;= 1 kb and trans-pairs) using pairtools. <br> Using the Hi-C data, we identified 80,333 TADs in MNT-1 cells using onTAD software 60 and the genes located in the same TAD with MFVs. Using four different tools, cooltools-dots, cLoops, mustache and FitHiChIP , we detected 201,862 loops based on Hi-C and H3K27ac HiChIP data and identified 8,569 loops for 597 tested MPRA SNPs. Using the Hi-C and HiChIP data, we constructed a high-resolution chromatin interaction map of MNT-1 cells. This map serves as an invaluable resource for investigating the interactions between the regulatory elements and their target genes in melanoma cells, thereby facilitating the elucidation of regulatory networks underlying human skin phenotype and diseases.
description: This is a dataset related a project on skin pigmentation: Integrative functional genomic analyses identify novel genetic variants influencing skin pigmentation in indigenous Africans
description: {"references": ["Integrative functional genomic analyses identify novel genetic variants influencing skin pigmentation in indigenous Africans"]}
DOI: 10.5281/zenodo.8240095
title: MNT-1 HiC and H3K27ac HiChIP data

description: We performed Hi-C and H3K27ac HiChIP assays in MNT1 cells. Hi-C is a high-throughput method for detecting chromatin interactions at whole genome scale and is often used to identify topologically associating domains (TADs) in the nucleus. H3K27ac HiChIP can identify chromatin interactions enriched for H3K27ac, a histone modification associated with active promoters and enhancers. We performed bridge linker mediated Hi-C and H3K27ac HiChIP using double (Hae3+Alu1) as well as single (Hae3) enzyme digestion in MNT-1 cells. For Hi-C_Hae3+Alu1, Hi-C_Hae3, HiChIP_Hae3+Alu1, and HiChIP_Hae3 assays, respectively, we sequenced 399 million (M), 430 M, 257 M, and 181 M paired reads and obtained 299 M, 305 M, 151 M, and 94 M valid interactions (cis-pairs &gt;= 1 kb and trans-pairs) using pairtools. <br> Using the Hi-C data, we identified 80,333 TADs in MNT-1 cells using onTAD software 60 and the genes located in the same TAD with MFVs. Using four different tools, cooltools-dots, cLoops, mustache and FitHiChIP , we detected 201,862 loops based on Hi-C and H3K27ac HiChIP data and identified 8,569 loops for 597 tested MPRA SNPs. Using the Hi-C and HiChIP data, we constructed a high-resolution chromatin interaction map of MNT-1 cells. This map serves as an invaluable resource for investigating the interactions between the regulatory elements and their target genes in melanoma cells, thereby facilitating the elucidation of regulatory networks underlying human skin phenotype and diseases.
description: This is a dataset related a project on skin pigmentation: Integrative functional genomic analyses identify novel genetic variants influencing skin pigmentation in indigenous Africans
description: {"references": ["Integrative functional genomic analyses identify novel genetic variants influencing skin pigmentation in indigenous Africans"]}
DOI: 10.5281/zenodo.8240188
title: MIR142 Sanger sequencing results in MPNs

description: To extend and complement knowledge about the occurrence and/or frequency of <em>MIR142</em> mutations in hematologic cancers, we sequenced <em>MIR142</em> in large panels of MPNs [including polycythemia vera (PV), essential thrombocythemia (ET), primary myelofibrosis (PMF), and chronic myeloid leukemia (CML)], blood disorders for which such mutations have never been tested, and in AML and CLL, for which the mutations have been reported. The dataset gathers Sanger sequencing results of the <em>MIR142</em> locus.
description: Dataset from publication Galka-Marciniak et al. 2022, Sci Rep "Mutations in the miR-142 gene are not common in myeloproliferative neoplasms" This work was supported by research grants from the Polish National Science Centre (2016/22/A/NZ2/00184, 2020/39/B/NZ5/01970, and 2020/39/D/NZ2/03106)
DOI: 10.5281/zenodo.8240187
title: MIR142 Sanger sequencing results in MPNs

description: To extend and complement knowledge about the occurrence and/or frequency of <em>MIR142</em> mutations in hematologic cancers, we sequenced <em>MIR142</em> in large panels of MPNs [including polycythemia vera (PV), essential thrombocythemia (ET), primary myelofibrosis (PMF), and chronic myeloid leukemia (CML)], blood disorders for which such mutations have never been tested, and in AML and CLL, for which the mutations have been reported. The dataset gathers Sanger sequencing results of the <em>MIR142</em> locus.
description: Dataset from publication Galka-Marciniak et al. 2022, Sci Rep "Mutations in the miR-142 gene are not common in myeloproliferative neoplasms" This work was supported by research grants from the Polish National Science Centre (2016/22/A/NZ2/00184, 2020/39/B/NZ5/01970, and 2020/39/D/NZ2/03106)
DOI: 10.5281/zenodo.8240185
title: Dataset for: Porous Self-assemblies Mediated by Dumbbell Particles as Cross-linking Agents

description: Input files (.py format) to perform Langevin dynamics simulations of binary mixtures of lobed colloidal particles using Hoomd-Blue 2.9.7, and respective trajectory files (.gsd format).
DOI: 10.5281/zenodo.8240184
title: Dataset for: Porous Self-assemblies Mediated by Dumbbell Particles as Cross-linking Agents

description: Input files (.py format) to perform Langevin dynamics simulations of binary mixtures of lobed colloidal particles using Hoomd-Blue 2.9.7, and respective trajectory files (.gsd format).
DOI: 10.6084/m9.figshare.23935350
title: Cow pie facilitation of red brome data

description: Red brome, soil moisture and soil N data collected along transect lines
DOI: 10.6084/m9.figshare.23935350.v1
title: Cow pie facilitation of red brome data

description: Red brome, soil moisture and soil N data collected along transect lines
DOI: 10.5281/zenodo.8240148
title: Featracer

description: This repository contains the dataset used to perform an evaluation of LDA in locating features as a comparison for FeatRacer. In the future, we plan to move the whole appendix of our paper to Zenodo.
DOI: 10.5281/zenodo.8240147
title: Featracer

description: This repository contains the dataset used to perform an evaluation of LDA in locating features as a comparison for FeatRacer. In the future, we plan to move the whole appendix of our paper to Zenodo.
DOI: 10.5281/zenodo.8240190
title: Metabolic profiles of obese soldiers before and after passing an intense 60-days weight-loss course (SEDENA)

description: Untargeted metabolomics data (HPLC-MS, high resolution) of urine of obese soldiers that participated successfully in a 60-day course for losing weight, in a training center of the Mexican army (SEDENA). The sample names with the ending -2 represent data after the treatment; without this ending, before the treatment. The raw data were converted to .mzML using the ProteoWizard, and compressed to .zip files which can be directly uploaded to the MetaboAnalyst.ca website.
DOI: 10.5281/zenodo.8240189
title: Metabolic profiles of obese soldiers before and after passing an intense 60-days weight-loss course (SEDENA)

description: Untargeted metabolomics data (HPLC-MS, high resolution) of urine of obese soldiers that participated successfully in a 60-day course for losing weight, in a training center of the Mexican army (SEDENA). The sample names with the ending -2 represent data after the treatment; without this ending, before the treatment. The raw data were converted to .mzML using the ProteoWizard, and compressed to .zip files which can be directly uploaded to the MetaboAnalyst.ca website.
DOI: 10.5281/zenodo.8076242
title: Datos bibliométricos procesados sobre responsabilidad social empresarial en la industria minera

description: Hoja de cálculo con data bibliométrica procesada (Tablas y figuras), usadas en revisión sistemática de literatura sobre responsabilidad social empresarial en la industria minera
DOI: 10.5281/zenodo.8076241
title: Datos bibliométricos procesados sobre responsabilidad social empresarial en la industria minera

description: Hoja de cálculo con data bibliométrica procesada (Tablas y figuras), usadas en revisión sistemática de literatura sobre responsabilidad social empresarial en la industria minera
DOI: 10.6075/j0jq117k
title: Video Games Communities Knowledge Graph Analysis. In Data Science & Engineering Master of Advanced Study (DSE MAS) Capstone Projects

description: The project aims to tackle the challenges that video game publishers face when utilizing customer data for marketing campaigns optimization. The proposed solutions include constructing a knowledge graph to consolidate data from multiple sources and applying Social Network Analysis to identify gaming communities and key players who can effectively spread the message to the target market. The end product will provide video game publishers with a set of data-driven tools to identify community leaders based on product genre, competition and previous coverage.
DOI: 10.6075/j0fx79np
title: Fire Science Physics Informed Machine Learning. In Data Science & Engineering Master of Advanced Study (DSE MAS) Capstone Projects

description: Next generation fire models provide the basis to understand fire physics in detail, leading the way for emulators to model potential fire behavior. This project uses data from hundreds of coupled fire-atmosphere simulations using the QUIC-Fire model to develop a reduced-order emulator. Such an emulator can be used to predict the wildfire spread, which can help the fire agencies to take necessary steps to reduce the damage. Additionally, the predictions can be utilized to mitigate the risk of controlled fires escalating into wildfires. The project encompasses several objectives: developing a system to evaluate the performance of deep learning models through benchmarking, conducting the benchmarking process, and leveraging the obtained results to enhance the accuracy of the models. Our product utilizes cloud infrastructure to provide a scalable and robust solution for managing the entire lifecycle of machine learning. This infrastructure enabled us to conduct numerous experiments, analyze results, and optimize various deep learning models, including U_Net, TF_Net,PhyDNet, and ConvLSTM.
DOI: 10.6075/j06d5t5h
title: Video Game Reviews Sentiment to Popularity. In Data Science & Engineering Master of Advanced Study (DSE MAS) Capstone Projects

description: Video Game Reviews Sentiment to Popularity is a project that sought to investigate the potential usage of video game reviews from aggregator websites to formulate a classification-based prediction for reaching a fixed threshold of number of users on Steam. Using a system of converting review documents to vectors before fitting them to a classification learner, the project was able to achieve a medium level of accuracy.