cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8403902
title: De novo nanopore sequencing overrepresents RNA modification landscape

description: RNA modifications are critical to the functional diversity and regulatory complexity of the transcriptome. With increasing frequency, direct nanopore RNA sequencing is applied to identify RNA modifications de novo. Here, we directly compare the MS2 phage genome RNA modification profiles determined using nanopore to orthogonal LC-MS/MS assays. The results reveal very different views of the modification landscape, suggesting caution when calling new RNA modifications using nanopore alone.
DOI: 10.5281/zenodo.8404379
title: RAM Legacy Stock Assessment Database v4.62

description: RAM Legacy Stock Assessment Database version 4.62
DOI: 10.5281/zenodo.8404378
title: RAM Legacy Stock Assessment Database v4.62

description: RAM Legacy Stock Assessment Database version 4.62
DOI: 10.5281/zenodo.8404036
title: Dataset: Metabolic shift toward ketosis in asocial cavefish increases social-like affinity -2

description: This is a video dataset 2 for the publication at BMC Biology 2023 whose summary is: Background:<br> Social affinity and collective behavior are nearly ubiquitous in the animal kingdom, but many lineages feature evolutionarily asocial species. These solitary species may have evolved to conserve energy in food-sparse environments. However, the mechanism by which metabolic shifts regulate social affinity is not well investigated. Results:<br> In this study, we used the Mexican tetra (Astyanax mexicanus), which features riverine sighted surface (surface fish) and cave-dwelling populations (cavefish), to address the impact of metabolic shifts on asociality and other cave-associated behaviors in cavefish, including repetitive turning, sleeplessness, swimming longer distances, and enhanced foraging behavior. After one month of ketosis-inducing ketogenic diet feeding, asocial cavefish exhibited significantly higher social affinity, whereas social affinity regressed in cavefish fed the standard diet. The ketogenic diet also reduced repetitive turning and swimming in cavefish. No major behavioral shifts were found regarding sleeplessness and foraging behavior, suggesting that other evolved behaviors are not largely regulated by ketosis. We further examined the effects of the ketogenic diet via supplementation with exogenous ketone bodies, revealing that ketone bodies are pivotal molecules positively associated with social affinity. Conclusions:<br> Our study indicated that fish that evolved to be asocial remain capable of exhibiting social affinity under ketosis, possibly linking the seasonal food availability and sociality.
DOI: 10.5281/zenodo.8404035
title: Dataset: Metabolic shift toward ketosis in asocial cavefish increases social-like affinity -2

description: This is a video dataset 2 for the publication at BMC Biology 2023 whose summary is: Background:<br> Social affinity and collective behavior are nearly ubiquitous in the animal kingdom, but many lineages feature evolutionarily asocial species. These solitary species may have evolved to conserve energy in food-sparse environments. However, the mechanism by which metabolic shifts regulate social affinity is not well investigated. Results:<br> In this study, we used the Mexican tetra (Astyanax mexicanus), which features riverine sighted surface (surface fish) and cave-dwelling populations (cavefish), to address the impact of metabolic shifts on asociality and other cave-associated behaviors in cavefish, including repetitive turning, sleeplessness, swimming longer distances, and enhanced foraging behavior. After one month of ketosis-inducing ketogenic diet feeding, asocial cavefish exhibited significantly higher social affinity, whereas social affinity regressed in cavefish fed the standard diet. The ketogenic diet also reduced repetitive turning and swimming in cavefish. No major behavioral shifts were found regarding sleeplessness and foraging behavior, suggesting that other evolved behaviors are not largely regulated by ketosis. We further examined the effects of the ketogenic diet via supplementation with exogenous ketone bodies, revealing that ketone bodies are pivotal molecules positively associated with social affinity. Conclusions:<br> Our study indicated that fish that evolved to be asocial remain capable of exhibiting social affinity under ketosis, possibly linking the seasonal food availability and sociality.
DOI: 10.5281/zenodo.8404345
title: De novo nanopore sequencing overrepresents RNA modification landscape, part 2

description: RNA modifications are critical to the functional diversity and regulatory complexity of the transcriptome. With increasing frequency, direct nanopore RNA sequencing is applied to identify RNA modifications de novo. Here, we directly compare the MS2 phage genome RNA modification profiles determined using nanopore to orthogonal LC-MS/MS assays. The results reveal very different views of the modification landscape, suggesting caution when calling new RNA modifications using nanopore alone.
DOI: 10.5281/zenodo.8404344
title: De novo nanopore sequencing overrepresents RNA modification landscape, part 2

description: RNA modifications are critical to the functional diversity and regulatory complexity of the transcriptome. With increasing frequency, direct nanopore RNA sequencing is applied to identify RNA modifications de novo. Here, we directly compare the MS2 phage genome RNA modification profiles determined using nanopore to orthogonal LC-MS/MS assays. The results reveal very different views of the modification landscape, suggesting caution when calling new RNA modifications using nanopore alone.
DOI: 10.5281/zenodo.8404347
title: De novo nanopore sequencing overrepresents RNA modification landscape, part 3

description: RNA modifications are critical to the functional diversity and regulatory complexity of the transcriptome. With increasing frequency, direct nanopore RNA sequencing is applied to identify RNA modifications de novo. Here, we directly compare the MS2 phage genome RNA modification profiles determined using nanopore to orthogonal LC-MS/MS assays. The results reveal very different views of the modification landscape, suggesting caution when calling new RNA modifications using nanopore alone.
DOI: 10.5281/zenodo.8404346
title: De novo nanopore sequencing overrepresents RNA modification landscape, part 3

description: RNA modifications are critical to the functional diversity and regulatory complexity of the transcriptome. With increasing frequency, direct nanopore RNA sequencing is applied to identify RNA modifications de novo. Here, we directly compare the MS2 phage genome RNA modification profiles determined using nanopore to orthogonal LC-MS/MS assays. The results reveal very different views of the modification landscape, suggesting caution when calling new RNA modifications using nanopore alone.
DOI: 10.25919/t1ad-8k76
title: Modelled deer density and impact on vegetation across the Melbourne drainage and waterway extent, Victoria

description: This collection contains spatial predictions of deer density and deer impact on vegetation across the Melbourne drainage and waterway extent. Deer density is quantified in units of faecal pellets/m². Deer impacts on vegetation (whole plants) are quantified as a percentage, based on foliage browsed, stem damage or rubbing damage. The median response modelled for each variable is provided, alongside the 5ᵗʰ and 95ᵗʰ quantiles to characterise uncertainty in the predictions. Please refer to the published manuscript under related links for further details (TBD).
DOI: 10.6084/m9.figshare.24239689
title: MetaFusion-Clinical reference files

description: Reference files for MetaFusion-Clinical software
DOI: 10.5281/zenodo.8404396
title: Stanford DAS-2 Array: Sand Hill Road Near-Surface Imaging Demo Dataset

description: An excerpt of recordings from the Stanford DAS-2 array along Sand Hill Road, acquired on Dec 23rd, 2022, using OptaSense ODH-3, is shared here. The data is used in the demo of the newly proposed "target" interferometry method with traffic-induced surface waves for near-surface characterization. The sampling rate is 250 samples per second. The repository for this new method can be found at https://github.com/syyuan93/vehicle_tracking_based_time_lapse_monitoring.
DOI: 10.5281/zenodo.8404395
title: Stanford DAS-2 Array: Sand Hill Road Near-Surface Imaging Demo Dataset

description: An excerpt of recordings from the Stanford DAS-2 array along Sand Hill Road, acquired on Dec 23rd, 2022, using OptaSense ODH-3, is shared here. The data is used in the demo of the newly proposed "target" interferometry method with traffic-induced surface waves for near-surface characterization. The sampling rate is 250 samples per second. The repository for this new method can be found at https://github.com/syyuan93/vehicle_tracking_based_time_lapse_monitoring.
DOI: 10.5281/zenodo.8403786
title: Ground Magnetic Disturbances due to Neutral-wind-driven Ionospheric Currents

description: This dataset includes GITM outputs of an idealized event. This dataset is used to analyze the geomagnetic disturbances due to neutral-wind-driven ionospheric currents, and their relative importance compared to the geomagnetic disturbances driven by magnetospheric convection electric field.
DOI: 10.5281/zenodo.8403787
title: Ground Magnetic Disturbances due to Neutral-wind-driven Ionospheric Currents

description: This dataset includes GITM outputs of an idealized event. This dataset is used to analyze the geomagnetic disturbances due to neutral-wind-driven ionospheric currents, and their relative importance compared to the geomagnetic disturbances driven by magnetospheric convection electric field.
DOI: 10.34740/kaggle/dsv/6605442
title: Global Crypto Currency Price Database
DOI: 10.5067/gms05/ceres/geo_ed4_fd_v02
title: SatCORPS CERES GEO Edition 4 GMS-5 Full Disk Version 2
DOI: 10.6084/m9.figshare.24239725
title: Supplementary material for: Pirowski, T., Szypuła B., 2023 "Dasymetric population mapping using building data"

description: This paper uses data on residential buildings from the nationwide vector database. Attribute information on buildings (location, volume, function, etc.) provides opportunities to estimate the number of residents. The recalculation of the population from the urban units into new spatial units was based on the area-weighted aggregation method. The location of buildings constituted a limiting variable, while the total square meterage (calculated as the area of the buildings and the number of their floors) constituted the binding variable. The introduction of additional binding variables related to the type of building and its location, as well as various methods of determining the square meterage per building type, resulted in the creation of a total of 19 maps of Cracow’s population. The results of the recalculation of population were related to demographic data compiled by the organisation Statistics Poland (GUS) relating to the 1x1 km grid. Comparison of the results with demographic data relating to other reference units allowed the reduction of subjective interpretation and the refining of input data conversion methods. As a result, correct methods for segmenting buildings were identified, useful optimisation criteria were selected, and the accuracy of population maps developed based on the database was calculated. For the input data, based solely on the amount of population in urban units, the calculated value of the mean absolute percentage error (MAPE) in the 1x1 km grid was 310.8%, and for the root mean square error (RMSE) was 1476 people. In the dasymetric method, directly associating the population with the volume of buildings, the errors fell to 21.9% and 632 people, respectively. Among the remaining 18 variants introducing the segmentation of buildings from the database, the best result was obtained for the variant based on minimizing the RMSE, associating the number of residents to single-family buildings (2.88 people/building) and associating the number of residents to the square footage in multi-family buildings (37.1m2/person) (MAPE=19.2%, RMSE=556 people).
DOI: 10.5281/zenodo.8404386
title: Data for Dipolar spin-exchange and entanglement between molecules in an optical tweezer array

description: Data for Dipolar spin-exchange and entanglement between molecules in an optical tweezer array
DOI: 10.5281/zenodo.8404385
title: Data for Dipolar spin-exchange and entanglement between molecules in an optical tweezer array

description: Data for Dipolar spin-exchange and entanglement between molecules in an optical tweezer array
DOI: 10.5281/zenodo.6764739
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Tapani Hopkins, https://orcid.org/0000-0002-2256-0098. Claims were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
DOI: 10.5281/zenodo.8130814
title: Scalar flux profiles in the unstable atmospheric surface layer under the influence of large eddies: Implications for eddy covariance flux measurements and the non-closure problem

description: This dataset contains the data used in the submitted manuscript of Liu, Liu, Huang, Desai, Zhang, Ghannam, and Katul 2023. Please refer to the manuscript for the detailed description of the dataset.
DOI: 10.5281/zenodo.8130813
title: Scalar flux profiles in the unstable atmospheric surface layer under the influence of large eddies: Implications for eddy covariance flux measurements and the non-closure problem

description: This dataset contains the data used in the submitted manuscript of Liu, Liu, Huang, Desai, Zhang, Ghannam, and Katul 2023. Please refer to the manuscript for the detailed description of the dataset.
DOI: 10.5281/zenodo.8404381
title: Dados brutos: "Competência em informação: padrões do tempo de aceite de artigos indexados na BRAPCI"

description: Esse conjunto de dados sustenta os resultados e as conclusões do estudo: LIMA, Luis Fernando Maia; DE LUCCA, Djuli Machado; LEITE, Cassiane Macedo. Competência em informação: padrões do tempo de aceite de artigos indexados na BRAPCI. Encontros Bibli, Florianópolis, v. 28, e. 94373, 2023. Disponível em: https://doi.org/10.5007/1518-2924.2023.e94373. Acesso em: 03 out. 2023. Resumo do artigo: Objetiva analisar aspectos relacionados ao tempo de aceite dos artigos brasileiros que contemplam a competência em informação indexados na base BRAPCI, indicando evolução temporal, padrões medianos de tempo de aceite, periódicos e a relação entre tempos de aceite e qualidade dos periódicos. Trata-se de análise estatística relacionada ao período entre a submissão e aprovação de artigos científicos originais brasileiros indexados na base BRAPCI entre os anos de 2000 a 2019, a partir de estratégia de busca que contempla os termos ‘competência em informação’ e seus sinônimos na literatura científica em Ciência da Informação. Foram úteis para a investigação um conjunto de 177 artigos publicados entre 2004 e 2019, sendo a maioria deles com tempo de aceite aceitável e esperado, conforme parâmetros levantados na literatura. Há, ainda, uniformidade da distribuição anual dos tempos de aceite entre os anos de 2014 e 2018. Os resultados evidenciam que não há relação entre a qualidade do periódico e tempos mais curtos de aceite. É possível observar, pelo menos a partir dos resultados levantados nesta investigação, que o tempo de aceite é um elemento favorável no processo de comunicação científica da temática de competência em informação no Brasil e pode, como consequência, constituir-se como um fator contribuidor para o desenvolvimento da temática em âmbito social, na ocasião em que os resultados das investigações são celeremente divulgados à sociedade. <strong>PALAVRAS-CHAVE:</strong> Tempo de aceite; Comunicação Científica; Competência em informação; Produção científica.
DOI: 10.5281/zenodo.8404380
title: Dados brutos: "Competência em informação: padrões do tempo de aceite de artigos indexados na BRAPCI"

description: Esse conjunto de dados sustenta os resultados e as conclusões do estudo: LIMA, Luis Fernando Maia; DE LUCCA, Djuli Machado; LEITE, Cassiane Macedo. Competência em informação: padrões do tempo de aceite de artigos indexados na BRAPCI. Encontros Bibli, Florianópolis, v. 28, e. 94373, 2023. Disponível em: https://doi.org/10.5007/1518-2924.2023.e94373. Acesso em: 03 out. 2023. Resumo do artigo: Objetiva analisar aspectos relacionados ao tempo de aceite dos artigos brasileiros que contemplam a competência em informação indexados na base BRAPCI, indicando evolução temporal, padrões medianos de tempo de aceite, periódicos e a relação entre tempos de aceite e qualidade dos periódicos. Trata-se de análise estatística relacionada ao período entre a submissão e aprovação de artigos científicos originais brasileiros indexados na base BRAPCI entre os anos de 2000 a 2019, a partir de estratégia de busca que contempla os termos ‘competência em informação’ e seus sinônimos na literatura científica em Ciência da Informação. Foram úteis para a investigação um conjunto de 177 artigos publicados entre 2004 e 2019, sendo a maioria deles com tempo de aceite aceitável e esperado, conforme parâmetros levantados na literatura. Há, ainda, uniformidade da distribuição anual dos tempos de aceite entre os anos de 2014 e 2018. Os resultados evidenciam que não há relação entre a qualidade do periódico e tempos mais curtos de aceite. É possível observar, pelo menos a partir dos resultados levantados nesta investigação, que o tempo de aceite é um elemento favorável no processo de comunicação científica da temática de competência em informação no Brasil e pode, como consequência, constituir-se como um fator contribuidor para o desenvolvimento da temática em âmbito social, na ocasião em que os resultados das investigações são celeremente divulgados à sociedade. <strong>PALAVRAS-CHAVE:</strong> Tempo de aceite; Comunicação Científica; Competência em informação; Produção científica.
DOI: 10.5517/ccdc.csd.cc2g50zn
title: CCDC 2268951: Experimental Crystal Structure Determination

description: Related Article: Jingkai Xu|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g5965
title: CCDC 2269206: Experimental Crystal Structure Determination

description: Related Article: Dmitry Yufit|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g5d35
title: CCDC 2269296: Experimental Crystal Structure Determination

description: Related Article: Mark R. J. Elsegood, Mostafa Gholizadeh, Harry Heaney, Philip C. Bulman Page, and Jake M. Cuckson|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g5d79
title: CCDC 2269300: Experimental Crystal Structure Determination

description: Related Article: Dmitry Yufit|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g3yxg
title: CCDC 2267926: Experimental Crystal Structure Determination

description: Related Article: tarek benlatreche|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g5yby
title: CCDC 2269830: Experimental Crystal Structure Determination

description: Related Article: Mark R. J. Elsegood, Philip Parker, Philip C. Bulman Page, Jake M. Cuckson|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g5ycz
title: CCDC 2269831: Experimental Crystal Structure Determination

description: Related Article: Mark R. J. Elsegood, Craig Williamson, Yohan Chan, Philp C. Bulman Page, Jake M. Cuckson|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g61mc
title: CCDC 2269932: Experimental Crystal Structure Determination

description: Related Article: tarek benlatreche|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g620s
title: CCDC 2269944: Experimental Crystal Structure Determination

description: Related Article: tarek benlatreche|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g62d5
title: CCDC 2269956: Experimental Crystal Structure Determination

description: Related Article: Dmitry Yufit, R.L.Gardiner, P.J.Low|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.