cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3599018_d2
title: Additional file 1: of Prevalence, heritability and genetic correlations of congenital sensorineural deafness and coat pigmentation phenotype in the English bull terrier

description: Phenotypic data of 1060 English bull terrier puppies included in the study. Phenotypic data file, including animal identification numbers, effects and phenotypic data; fields are: datid – data point identity number; pid – pedigree identity number; ps – sire pedigree identity number; pd – dam pedigree identity number; litter – litter number; f – inbreeding coefficient; sex – 0 = male, 1 = female; age – age in days at BAER test; yot – year of BAER test; patch – location of patches; 0 = solid coloured, 1 = all white, 2 = white with patch on head, 3 = white with patch on body, 4 = white with patches on head and body. mel – pigmentation categorisation 1; 0 = all white, 1 = patch on head only, 2 = patch on body, 3 = solid coloured. mel1 – pigmentation categorisation 2; 0 = all white, 1 = non-white (including patched); mel2 – pigmentation categorisation 3; 0 = all white, 1 = patched, 2 = solid coloured; deaf1 – hearing status categorisation 1; 0 = bilaterally hearing, 1 = uni- or bilaterally deaf; deaf2 – hearing status categorisation 2; 0 = bilaterally hearing, 1 = unilaterally deaf, 2 = bilaterally deaf. (TXT 59 kb)
DOI: 10.6084/m9.figshare.c.3599027_d1
title: Additional file 3: Table S2. of Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)

description: Varroa jacobsoni, 586 differentially expressed genes (FDR
DOI: 10.6084/m9.figshare.c.3599030_d1
title: Additional file 2: Table S1. of Radiographic occult cerebellar germinoma presenting with progressive ataxia and cranial nerve palsy

description: Previously reported cases of cerebellar GCTs. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3599006_d4
title: MOESM4 of Decoding the complete arsenal for cellulose and hemicellulose deconstruction in the highly efficient cellulose decomposer Paenibacillus O199

description: Additional file 4: File SF1. Proteomic analysis of Paenibacillus O199.
DOI: 10.6084/m9.figshare.c.3599027_d2
title: Additional file 2: Table S1. of Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)

description: Varroa jacobsoni, 1013 differentially expressed genes (FDR
DOI: 10.6084/m9.figshare.c.3599033_d1
title: Additional file 1: of Immunisation coverage and its determinants among children aged 12-23 months in Atakumosa-west district, Osun State Nigeria: a cross-sectional study

description: Data set on immunisation coverage survey in Atakumosa west LGA, Osun State Nigeria. (XLS 1246 kb)
DOI: 10.6084/m9.figshare.c.3599279_d1
title: Additional file 1: of Acute phase protein mRNA expressions and enhancement of antioxidant defense system in Black-meated Silkie Fowls supplemented with clove (Eugenia caryophyllus) extracts under the influence of chronic heat stress

description: Bello AU, Sulaiman JA, Aliyu MS. Acute phase protein mRNA expressions and enhancement of antioxidant defense system in Black-meated Silkie Fowls supplemented with clove (Eugenia caryophyllus) extracts under the influence of chronic heat stress, data sets. figshare. 2016.(XLSX 8 kb)
DOI: 10.15468/dl.gmuyyv
title: Occurrence Download

description: A dataset containing 464 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Squillidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 464 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032892-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3599501_d8
title: Additional file 8: Table S6. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

description: List of low confidence Tnt1 insertion loci and its supporting reads/nodes identified from NF10547 by WGS. (XLS 141Â kb)
DOI: 10.6084/m9.figshare.c.3599546_d1
title: MOESM2 of Enhancing full-length antibody production by signal peptide engineering

description: Additional file 2: Table S2. Strains and plasmids used in this study.
DOI: 10.6084/m9.figshare.c.3599552_d1
title: Additional file 2: Table S1. of Human newborn bacille Calmetteâ  GuĂŠrin vaccination and risk of tuberculosis disease: a case-control study

description: Number of genes differentially expressed between cases and controls from the primary cohort. Column B shows this analysis when all infants were included, whereas the other two columns show analysis with cluster 1 and cluster 2 infants included, respectively. A non-FDR adjusted p value cutoff of 0.05 and a fold change absolute value of 1.3 was used to define differential expression. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3599501_d9
title: Additional file 6: Table S4. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

description: List of low confidence Tnt1 insertion loci and its supporting reads/nodes identified from NF11217 by WGS. (XLS 345Â kb)
DOI: 10.6084/m9.figshare.c.3599552_d2
title: Additional file 3: Table S2. of Human newborn bacille Calmetteâ  GuĂŠrin vaccination and risk of tuberculosis disease: a case-control study

description: Genes differentially expressed between cluster 1 and cluster 2 infants from the primary cohort. Gene expression was calculated by subtracting expression in PBMC incubated with medium alone from expression in PBMC incubated with BCG. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.c.3599552_d3
title: Additional file 6: Table S5. of Human newborn bacille Calmetteâ  GuĂŠrin vaccination and risk of tuberculosis disease: a case-control study

description: Unique and shared gene expression pathways in each of four groups from the primary cohort: a group of cases and controls within each of the two clusters. Gene expression was from PBMC incubated with medium alone. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3599546_d3
title: MOESM1 of Enhancing full-length antibody production by signal peptide engineering

description: Additional file 1: Table S1. The DNA sequences of the signal peptide TIR variants and the relative TIR strengths.
DOI: 10.6084/m9.figshare.c.3599552_d4
title: Additional file 7: Table S6. of Human newborn bacille Calmetteâ  GuĂŠrin vaccination and risk of tuberculosis disease: a case-control study

description: Unique and shared gene expression pathways in each of four groups from the validation cohort: a group of cases and controls within each of the two clusters. Gene expression was from PBMC incubated with medium alone. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.c.3599768_d6
title: Additional file 6: of Novel microRNA discovery using small RNA sequencing in post-mortem human brain

description: Contains summary information of each of the 99 novel putative miRNAs and the 30 miRNAs results from public data, in separate tabs. The following information is included in this file: mature and hairpin sequence loci, miRDeep* score, expression, the number of good-quality alignments to miRBase entries, the name of the miRBase entry with the best alignment, the name and distance (basepairs) of any gene within 1000 basepairs of the novel miRNA, adjusted p-value and log2 fold-change of the differential expression analyses (C v. HD, C v. PD), whether the novel miRNA overlaps an entry within the Londin et al. novel miRNA dataset, which entries of the HD/PD data set and the public data set results match by location, which novel miRNAs were experimentally validated, mature and hairpin sequence, and predicted hairpin secondary structure. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.c.3599768_d7
title: Additional file 1: of Novel microRNA discovery using small RNA sequencing in post-mortem human brain

description: Provides information on each of the 93 samples used in this study. This information includes ID, type (Control/HD/PD), PMI (Post-mortem-interval), age at death, sex, batch, brain bank, and cause of death. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3599768_d8
title: Additional file 7: of Novel microRNA discovery using small RNA sequencing in post-mortem human brain

description: A table containing information on the qRT-PCR performed with seven novel miRNAs and two known miRNAs. Per miRNA, this information includes mean CT, range of CT, cDNA dilution, the number of samples (of 12) with CTâ
DOI: 10.6084/m9.figshare.c.3599807_d1
title: Additional file 1: of Knowledge transfer: what drug information would specialist doctors need to support their clinical practice? Results of a survey and of three focus groups in Italy

description: Questionnaire. Description of data: 24-item questionnaire used for the quantitative survey. (RTF 371 kb)
DOI: 10.6084/m9.figshare.c.3599813_d2
title: Additional file 1: Table S1. of Aberrant DNA methylation profiles of inherited and sporadic colorectal cancer

description: Interphasic FISH results of 37 colorectal cancers. (XLS 40.5 kb)
DOI: 10.15468/dl.ku63ex
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vitreledonellidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032893-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3600140_d3
title: MOESM3 of Dose-dependent alcohol-induced alterations in chromatin structure persist beyond the window of exposure and correlate with fetal alcohol syndrome birth defects

description: Additional file 3. The primer sequences utilized in the ChIP assay and quantitative PCR (qPCR) and expression analysis.
DOI: 10.6084/m9.figshare.c.3600152_d1
title: Additional file 2: Table S1. of Molecular and cellular characteristics of hybrid vigour in a commercial hybrid of Chinese cabbage

description: Sequences of primers used for quantitative RT-PCR. Table S2. Plant hormone contents in 2 day cotyledon and 10 day 1st and 2nd leaves in S27, R29, F1. Table S3. Expression level of organ size associated and chloroplast-targeted genes by RNA-seq. Table S4. Differentially expressed genes between S27 and R29 in 2 day cotyledon. Table S5. Differentially expressed genes between S27 and F1 in 2 day cotyledon. Table S6. Differentially expressed genes between R29 and F1 in 2 day cotyledon. Table S7. Differentially expressed genes between F1 and MPV (Mid Parent Values) in 2 day cotyledon. Table S8. GO term overrepresented in differentially expressed genes between parental lines in 2 day cotyledon. Table S9. GO terms overrepresented in differentially expressed genes between S27 and F1 in 2 day cotyledon. Table S10. GO terms overrepresented in differentially expressed genes between R29 and F1 in 2 day cotyledon. Table S11. GO terms overrepresented in differentially expressed genes between F1 and MPV (Mid parent values) in 2 day cotyledon. Table S12. Allele-specific expressed genes in F1 hybrid. Table S13. GO term overrepresented in allele specific expressed genes in F1 at 2 days after sowing. (XLSX 157 kb)
DOI: 10.15468/dl.68gnda
title: Occurrence Download

description: A dataset containing 387702 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 2022-2022"
 ]
}

 The dataset includes 387702 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032858-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3600389_d2
title: Additional file 1: of Pipeline for the identification and classification of ion channels in parasitic flatworms

description: Table S1. Sequence counts per ion channel family obtained from the KEGG and SwissProt databases and included in the training and test datasets. Table S2. Accession numbers of ion channels selected for support vector machine model training. Table S3. The number of sequences in the testing dataset before and after BLASTp analyses. Table S4. The number of identified test data sequences from humans and C. elegans within each group and divided into known ion channel and non-ion channel datasets. Table S5. Cross-validation, training and testing accuracies of each model. Table S6. Final tables of confusion matrices for the “Classifier” and “Dipeptide” models. Table S7. Summary of flatworm ion channels predicted using the MuSICC identification and classification pipeline with high and medium confidence. Table S8. Complete set of flatworm ion channels predicted using the MuSICC identification and classification pipeline. (XLS 2960 kb)
DOI: 10.6084/m9.figshare.c.3600395_d1
title: Additional file 5: Table S7. of The human olfactory transcriptome

description: Expression profile of the OR repertoire. (XLSX 161 kb)
DOI: 10.6084/m9.figshare.c.3600395_d2
title: Additional file 7: Table S9. of The human olfactory transcriptome

description: Genes that are discussed in the text. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3600401_d1
title: Additional file 3: of Transcriptome study and identification of potential marker genes related to the stable expression of recombinant proteins in CHO clones

description: Names and biological functions of the 14 potential marker genes. Short and full gene names including biological functions of the 14 potential marker genes. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3600395_d3
title: Additional file 2: Table S2. of The human olfactory transcriptome

description: Whole genome expression of the studied samples (in FPKM). FC_OE, the fold change of the human olfactory epithelium relative to the controls; FC_resp, the fold change of the human respiratory epithelium relative to the controls; FC_MOE, the fold change of mouse olfactory epithelium relative to the controls, FC_MOB, the fold change of mouse olfactory bulb relative to the controls. NoOrth- no mouse ortholog. OSN- olfactory sensory neurons in RPM (reads per million). (XLSX 22311 kb)
DOI: 10.6084/m9.figshare.c.3600407_d1
title: MOESM1 of Convergence of soil microbial properties after plant colonization of an experimental plant diversity gradient

description: Additional file 1: Table S1. Plant species of weeded subplots (resident plant species) and non-weeded subplots (colonizing plant species). Colonizing plant species are divided into internal (belonging to the species pool of the resident plant species) and external (not belonging to the species pool of the resident plant species) plant species.
DOI: 10.15468/dl.qznrh8
title: Occurrence Download

description: A dataset containing 31476 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "Geometry POLYGON ((147.3269 -25.22383, 148.2252 -25.22383, 148.2252 -24.32552, 147.3269 -24.32552, 147.3269 -25.22383))",
 "Year is less than 2025"
 ]
}

 The dataset includes 31476 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032894-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b7ccd4
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphitretidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 37 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032897-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3600710_d1
title: Additional file 3: of Unappreciated diversification of stem archosaurs during the Middle Triassic predated the dominance of dinosaurs

description: Supertree topology with phytosaurs as crown group and stem group archosaurs. (NEX 20 kb)
DOI: 10.6084/m9.figshare.c.3600899_d4
title: Additional file 7: Table S7. of Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis

description: Primers used for quantitative RT-PCR validation of microRNA differentially expressed in the regenerating lizard tail. (XLSX 43Â kb)
DOI: 10.6084/m9.figshare.c.3600899_d7
title: Additional file 3: Table S3. of Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis

description: DESeq differential expression testing of microRNA between the regenerating green anole tail tip and base. (XLSX 85Â kb)
DOI: 10.6084/m9.figshare.c.3600899_d8
title: Additional file 4: Table S4. of Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis

description: List of microRNA targets predicted by both RNAhybrid and miRanda. (XLSX 2990Â kb)
DOI: 10.6084/m9.figshare.c.3600917_d1
title: Additional file 2: of iCLIP identifies novel roles for SAFB1 in regulating RNA processing and neuronal function

description: Pentamer Z-scores. (XLSX 75 kb)
DOI: 10.6084/m9.figshare.c.3600899_d9
title: Additional file 5: Table S5. of Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis

description: Expression summary of down- or upregulated microRNAs and their mRNA targets. (XLSX 218Â kb)
DOI: 10.6084/m9.figshare.c.3600926_d1
title: Additional file 4: of Prevalence of cramps in patients over the age of 60 in primary care : a cross sectional study

description: AF TableÂ 3: detailed medical history. Detailed medical history of each patient focussed on medical conditions at risk of cramps. (CSV 9Â kb)
DOI: 10.6084/m9.figshare.c.3600899_d10
title: Additional file 2: Table S2. of Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis

description: MicroRNA expression in green anole tail regeneration: counts from miRDeep2 and normalized DESeq values. (XLSX 120Â kb)
DOI: 10.6084/m9.figshare.c.3601094_d6
title: MOESM2 of Cold temperature blocks thyroid hormone-induced changes in lipid and energy metabolism in the liver of Lithobates catesbeianus tadpoles

description: Additional file 2: Tables S2-1 to S2-6. Changes in compositions of fatty acids in phosphatidylcholine, phosphatidylethanolamine, phosphatidylserine, phosphatidylinositol, phosphatidylglycerol and cardiolipin from the tadpole liver.
DOI: 10.6084/m9.figshare.c.3601121_d1
title: Additional file 1: of A comprehensive collection of annotations to interpret sequence variation in human mitochondrial transfer RNAs

description: Variant annotation by 7 different tools. All the annotations provided by MToolBox, ANNOVAR, SnpEff, dbNSFP, MitImpact 2.0, MitoBamAnnotator and mit-o-matic are shown. Three variants were considered (m.879T&gt;C, m.3436G&gt;C, m.4450G&gt;A), one for an rRNA gene (MT-RNR1), one for a tRNA gene (MT-TM) and one for a protein coding gene (MT-ND1). ANNOVAR and SnpEff tools use dbNSFP databases. Generally, all the tools provided an accurate annotation for the missense variant, although we were not able to obtain any information by mit-o-matic web-based software. MToolBox provided the most complete annotation for non protein coding regions. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3601100_d7
title: Additional file 4: Table S1. of Single-cell sequencing reveals karyotype heterogeneity in murine and human malignancies

description: Overview of single-cell sequencing samples and sequencing statistics. An overview of general sequencing and analysis statistics of the single-cell sequencing data. The number of analysed reads corresponds to the number of uniquely mappable reads used in the copy number annotation pipeline. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3601133_d1
title: MOESM15 of Innate immune defects in HIV permissive cell lines

description: Additional file 15: File S1. R script gathering the different statistical analyses needed to reproduce the main figures and results of the paper.
DOI: 10.15468/dl.ur2ays
title: Occurrence Download

description: A dataset containing 4028 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ocypodidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4028 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032898-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3601409_d1
title: MOESM4 of Exploring complex cellular phenotypes and model-guided strain design with a novel genome-scale metabolic model of Clostridium thermocellum DSM 1313 implementing an adjustable cellulosome

description: Additional file 4. The model in SBML format set up for growth on cellobiose.
DOI: 10.6084/m9.figshare.c.3601409_d3
title: MOESM3 of Exploring complex cellular phenotypes and model-guided strain design with a novel genome-scale metabolic model of Clostridium thermocellum DSM 1313 implementing an adjustable cellulosome

description: Additional file 3. Minimal cut sets for ethanol, hydrogen, and isobutanol production.
DOI: 10.6084/m9.figshare.c.3601409_d4
title: MOESM1 of Exploring complex cellular phenotypes and model-guided strain design with a novel genome-scale metabolic model of Clostridium thermocellum DSM 1313 implementing an adjustable cellulosome

description: Additional file 1. Model structure and biomass term calculations.
DOI: 10.6084/m9.figshare.c.3601409_d5
title: MOESM5 of Exploring complex cellular phenotypes and model-guided strain design with a novel genome-scale metabolic model of Clostridium thermocellum DSM 1313 implementing an adjustable cellulosome

description: Additional file 5. The model in SBML format set up for growth on cellulose.
DOI: 10.15468/dl.qzwybu
title: Occurrence Download

description: A dataset containing 1625 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than 50000",
 "Year is 2021",
 "DecimalLongitude is greater than or equal to 10.04",
 "DecimalLongitude is less than or equal to 10.15",
 "DecimalLatitude is greater than or equal to 55.84",
 "DecimalLatitude is less than or equal to 55.87"
 ]
}

 The dataset includes 1625 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032899-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3601430_d2
title: Additional file 1: Tables S1-S6. of Transcriptionally active LTR retrotransposons in Eucalyptus genus are differentially expressed and insertionally polymorphic

description: Table S1. Primers Sequences using different techniques from LTR-RTEs families. Table S2. PBS and PPT sequences from the LTR-RTE families characterized in E. grandis genome. Table S3. Diversity (Pi) between LTRs of retrotransposon families in Eucalyptus grandis genome. We used data from intact complete copies. Table S4. Total fragments and polymorphic bands in IRAP primers of five Eucalyptus species. Table S5. Total fragments and polymorphic bands in REMAP combinations of five Eucalyptus species. Table S6. Expressed sequence tags (EST) matched to complete LTR-RTEs elements.