cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6505380
title: Quality control traceability during the packing and release process of Ceratitis capitata for Sterile Insect Technique

description: <strong>Abstract</strong> In programs applying the Sterile Insect Technique (SIT), the quality of insects deployed in the field determines the success in preventing, suppressing, containing, or eradicating the pest population. In the fruit fly emergence and release facility (ERF) of the Moscamed Program in Mexico, irradiated pupae of <em>Ceratitis capitata</em> are packed in Mexico-type towers, and key adult quality parameters, such as emergence, fliers, and survival, are determined throughout the packing, handling and release process. However, different methodologies are used to estimate the percentage of fliers in the different stages of the process, raising doubts of whether observed differences are due to the effect of each stage or to the methodology used. With this in mind, we developed an alternative called “Adult Flier device” (= AF-device) to evaluate the adult flier parameter following a critical evaluation path of five steps: 1) upon arrival at ERF, 2) post-packing, 3) post-holding, 4) post-chilling, and 5) post-release, where adult fliers and survival under stress were evaluated. We also compared the current methodologies for the estimation of "absolute fliers" available in different operating manuals. Our results suggest that the AF-device allows reliable traceability of sterile insect quality parameters throughout the packing and release process, since no significant differences were observed with the control treatments. In the chilling stage, the five methodologies tested were equivalent, but the AF-device was less time-consuming and required less manpower and biological material than the other methodological options. Our results demonstrate that the use of the AF-device can be a feasible, versatile, innovative, and efficient alternative to evaluate quality control parameters throughout the process of packing and releasing sterile insects, providing reliable results in a timely manner with less hand labor using minimal biological material.
DOI: 10.5281/zenodo.6591453
title: High frequency distributed temperature sensing and eddy covariance data observed at Hyytiälä measurement station during summer 2019

description: This record contains high frequency distributed temperature sensing and eddy covariance data observed at Hyytiälä measurement station and used in the following study: Peltola, O., Aurela, M., Launiainen, S. and Katul, G. (2022), Probing the eddy size and its effective mixing length in stably stratified roughness sublayer flows. Q J R Meteorol Soc. Accepted Author Manuscript. https://doi.org/10.1002/qj.4386 Hyytiala_DTS_mm_yyyy.zip These zip-files contain continuous high frequency potential temperature profiles measured along the Hyytiälä127-metre tall mast. See more information on the data in the netCDF-file attributes and on the measurement setup in the related scientific article. EC27.zip This zip-file contains high frequency data from an eddy covariance measurement setup located at 27 m height in the measurement height. See more information in EC27_readme.txt and on the measurement setup in the related scientific article. EC67.zip This zip-file contains high frequency data from an eddy covariance measurement setup located at 68 m height in the measurement height. See more information in EC67_readme.txt and on the measurement setup in the related scientific article. codes_Hyytiala.zip Matlab codes to produce similar figure as Fig. 2 in the abovementioned article.
DOI: 10.5281/zenodo.6768678
title: Early postnatal individual vocal recognition in a highly colonial mammal species

description: Dataset associated with the article entitled 'Early postnatal individual vocal recognition in a highly colonial mammal species'
DOI: 10.5281/zenodo.7243770
title: Data and Code accompanying "Dual communities in spatial networks"

description: This data was generated in the publication "Dual communities in spatial networks" which is available in ArXiv:2105.06687. In addition to the data, a version of the code found in the Github repository of this project was added. See README.md in repository for more information.
DOI: 10.6073/pasta/7f984c2ed9e63754577ee711e6d74a6e
title: Plant and soil organic matter responses to ten years of nutrient enrichment in the Nutrient Network:Nutrient Network. A cross-site investigation of bottom-up control over herbaceous plant community dynamics and ecosystem function

description: This experiment is one implementation of a globally distributed experiment, known as the Nutrient Network. At Cedar Creek, as in over 70 other sites in grasslands around the world, the experiment aims to describe impacts of increased nutrients (nitrogen, phosphorus, potassium, sulfur and other metals) and decreased herbivory (removal of mammals by fencing). Two overarching questions are being explored with these manipulations: 1. To what extent are plant production and diversity co-limited by multiple nutrients in herbaceous-dominated communities? 2. Under what conditions do grazers or fertilization control plant biomass, diversity, and composition? By utilizing identical protocols at diverse grassland sites around the world, NutNet aims to uncover both the generalities in ecosystem functioning, and the contingencies or differences which can obscure those common mechanisms. In addition to the standard NutNet protocol, e247 includes an additional low Nitrogen gradient (1 gram Nitrogen per meter squared per year and 5 grams Nitrogen per meter squared per year in addition to the standard 10 grams Nitrogen per meter squared per year).
DOI: 10.5281/zenodo.1435912
title: Monthly precipitation in mm at 1 km resolution (multisource average) based on SM2RAIN-ASCAT 2007-2021, CHELSA Climate and WorldClim

description: Monthly precipitation in mm at 1 km resolution based on SM2RAIN-ASCAT 2007-2021 (https://doi.org/10.5281/zenodo.2615278). Downscaled to 1 km resolution using gdalwarp (cubic splines) and combined with WorldClim (https://worldclim.org/data/worldclim21.html) and CHELSA Climate (https://chelsa-climate.org/downloads/) monthly values. Final values are estimated as a simple average between the three precipitation data sources; a more objective approach would be to use training points e.g. meteo-station monthly values, then train an ensemble model using the 3 data sources as independent variables. Another global data source of precipitation images is the monthly IMERGE dataset, however this requires transformation and is available only for limited span of years. Processing steps are available <strong>here</strong>. Antarctica is not included. Standard deviation (sd) indicates a difference between the 3 data sources. To access and visualize maps use: <strong>https://openlandmap.org</strong>.<strong> </strong>If you discover a bug, artifact or inconsistency in the maps, or if you have a question please use some of the following channels: Technical issues and questions about the code: https://gitlab.com/openlandmap/global-layers/issues General questions and comments: https://disqus.com/home/forums/landgis/ All files internally compressed using "COMPRESS=DEFLATE" creation option in GDAL. File naming convention: clm = theme: climate, precipitation = variable: precipitation, wc.v2.1.chelsa.v2.1.sm2rain.oct = determination method: long-term average values for October, m = mean value, 1km = spatial resolution / block support: 1 km, s0..0cm = vertical reference: land surface, 1980..2020 = time reference: from 1980 to 2020, v0.3 = version number: 0.3,
description: {"references": ["Brocca, L., Filippucci, P., Hahn, S., Ciabatta, L., Massari, C., Camici, S., Sch\u00fcller, L., Bojkov, B., Wagner, W. (2019). SM2RAIN-ASCAT (2007-2018): global daily satellite rainfall from ASCAT soil moisture. submitted to Earth System Science Data.", "Karger, D. N., Conrad, O., B\u00f6hner, J., Kawohl, T., Kreft, H., Soria-Auza, R. W., ... & Kessler, M. (2017). Climatologies at high resolution for the earth's land surface areas. Scientific data, 4, 170122.", "Huffman, G. J., D. T. Bolvin, D. Braithwaite, K. Hsu, R. Joyce, and P. Xie, (2014). NASA Global Precipitation Measurement (GPM) Integrated Multi-satellitE Retrievals for GPM (IMERG), Algorithm Theoretical Basis Document (ATBD). https://storm- pps.gsfc.nasa.gov/storm/IMERG_ATBD_V4.pdf", "Fick, S. E., & Hijmans, R. J. (2017). WorldClim 2: new 1\u2010km spatial resolution climate surfaces for global land areas. International Journal of Climatology, 37(12), 4302-4315."]}
DOI: 10.5281/zenodo.2590799
title: A Long-Term Micrometeorological and Hydrological Dataset Across an Elevation Gradient in Sagehen Creek, Sierra Nevada, California

description: We compile and release ~55 years of daily and ~20 years of hourly Micrometeorological and hydrological data from Sagehen Creek a 28 km〖^2〗 watershed with observation sites spanning 1771 to 2670 m. A USGS gauging station measures streamflow at the catchment outlet. There are three Snow Telemetry (SNOTEL) stations: Independence Camp(2128 m), Independence Creek (1962 m) and Independence Lake (2541 m) that measure hourly precipitation, temperature, soil moisture (at 5, 20, and 50 cm), as well as daily snow water equivalent (SWE) and snow depth.  A new method was used to estimate hourly precipitation data using quality controlled daily totals. A NOAA cooperative observer (COOP) station measures daily precipitation, temperature, SWE, and snow depth from 1953-1997 and then measures hourly precipitation, temperature, SWE, and snow depth, relative humidity, and solar radiation from 2001 through 2017 2001-present. There are an additional three towers with data beginning in 2009 measuring snow depth, SWE,        solar radiation, barometric pressure, precipitation, relative humidity, and temperature: Tower 1 (1934m), Tower 3 (2114 m), and Tower 4 (2350 m). Wind speed, temperature, and relative humidity measured at 7.6 and 30.5 m at each site. Data from all stations were checked for poor QA/QC and substantial and sophisticated gap-filling techniques were deployed. This dataset holds potential for improving understanding of orographic processes and their implications for streamflow generation in a groundwater-dominated watershed.
DOI: 10.5281/zenodo.4687105
title: Energy demand scenarios in buildings until the year 2050 - scenarios with refurbishment rate (maintenance + thermal renovation) of 0.5%, 1%, 2% and 3%

description: No description.
DOI: 10.5281/zenodo.7342599
title: Supporting Data - Shallow Fracture Buffers High Elevation Runoff in Northwest Greenland

description: This dataset contains supporting data accompanying Culberg, Chu, & Schroeder, "Shallow Fracture Buffers High Elevation Runoff in Northwest Greenland", <em>Geophysical Research Letters</em>, 2022. It includes the following: Ice-penetrating radar-derived mappings of transient firn aquifers and buried refrozen ice complexes (ice blobs) beneath ice slabs in Northwest Greenland. Porosity estimates derived from the inversion of ice-penetrating radar reflectivity for the 20150510_01 Ultrawideband MCoRDS transect flow in Northwest Greenland as part of NASA OIB. An NDWI stack image showing the maximum NDWI on a per pixel basis from all Landsat images between 2000 and 2016 for the region. Data for a time series of NDWI within the upslope catchment of each aquifer or blob. Locations of moulins, supraglacial lakes, and drained supraglacial lakes from high resolution optical imagery. Linear features extracted from the high resolution optical imagery. Surface crevasse densities and surface water feature densities inferred from the extracted linear features for the northern and southern portions of the ice slab region. Resistive stress and fracture toughness data for each location where fractures are inferred from the high resolution optical imagery. Full resolution image files for WorldView imagery used in the Supporting Information Figure S6.
DOI: 10.6084/m9.figshare.21632732.v2
title: Data from "Temporal analysis of GBIF data reveals the restructuring of communities following climate change"

description: Environmental data extracted from each 200-km-radius sliding window. Columns are: id_window : an identifier for each sliding window hii : the mean Human Influence Index within the sliding window season : the period from which temperature data were extracted (annual, summer or winter) temperature_trend : the linear trend in temperature in the sliding window (°C / yr) temperature_mean : the mean temperature in the sliding window (°C) continent : whether the sliding window is located in Europe or North America longitude : the longitude of the centroid of the sliding window (decimal degrees, WGS84) latitude : the latitude of the centroid of the sliding window (decimal degrees, WGS84) ecoregion : the main ecoregion that the sliding window overlaps
DOI: 10.25380/iastate.12685775
title: Data from "Catalytic Upcycling of High Density Polyethylene via a Processive Mechanism"

description: GC traces of liquid phase products of hydrogenolysis of polyethylenes, under a series of conditions with supported platinum nanoparticle catalysts and controls;GPC traces of residual polymeric materials after catalytic conversions;Characterization of catalytic materials;DFT calculations of hexane adsorption onto model catalyst surfaces;NMR spectra, including EXSY spectra, characterizing surface-polymer interactions, polymer conformations, and dynamics
DOI: 10.25845/ad6j-zm19
title: Identification Of Two-Phase Coral Reef Recovery Patterns
DOI: 10.5281/zenodo.3829502
title: Supplementary data for article 'Estimating and abstracting the 3D structure of feline bones using neural networks on X-ray (2D) images'

description: 3D DICOM volumes (CT scans) of feline femora, PNGs generated from them as DRRs using MeVisLab, and STLs generated from the DICOM volumes with MIMICS or MeshLab. Software to work with these files can be found at http://doi.org/10.5281/zenodo.3829423
DOI: 10.5281/zenodo.3877999
title: Data & Code: Artificial eyespots on cattle reduce predation by large carnivores

description: Data and code used in article on: artificial eyespots on cattle reduce predation by large carnivores.
DOI: 10.5281/zenodo.6591446
title: High frequency distributed temperature sensing and eddy covariance data observed at Sodankylä measurement station during summer/winter 2020

description: This record contains high frequency distributed temperature sensing and eddy covariance data observed at Sodankylä measurement station and used in the following study: Peltola, O., Aurela, M., Launiainen, S. and Katul, G. (2022), Probing the eddy size and its effective mixing length in stably stratified roughness sublayer flows. Q J R Meteorol Soc. Accepted Author Manuscript. https://doi.org/10.1002/qj.4386 Sodankyla_DTS_mm_yyyy.zip These zip-files contain continuous high frequency potential temperature profiles measured along the Sodankylä 48-metre tall mast. See more information on the data in the netCDF-file attributes and on the measurement setup in the related scientific article. ECa.zip This zip-file contains high frequency data from an eddy covariance measurement setup located at 24.5 m height in the measurement height. See more information in ECa_readme.txt and on the measurement setup in the related scientific article. ECb.zip This zip-file contains high frequency data from an eddy covariance measurement setup located at 3 m height in the measurement height. See more information in ECb_readme.txt and on the measurement setup in the related scientific article. codes_Sodankyla.zip Matlab codes to produce similar figure as Fig. 2 in the abovementioned article, but for Sodankylä.
DOI: 10.6084/m9.figshare.17284565.v3
title: From competition to cooperation: kin selection against selfish shade avoidance behavior promotes plant invasions.

description: This dataset included plant biomass, shade avoidance response traits, defensive traits of native and introduced genotypes.
DOI: 10.6084/m9.figshare.20407509.v1
title: Figures (Linear & Non-linear).xlsx

description: <br> <br> Sheet 1: Linear Mode Sheet 2: Comparison of non-linear
DOI: 10.6084/m9.figshare.21621132
title: dataset

description: dataset of force and length measurements
DOI: 10.17632/rnk7yhcvmg.2
title: Underlying data for 'Risk Factors and Mortality Outcomes of Extended-Spectrum Beta-Lactamase-Producing Escherichia coli Bacteremia: A Retrospective Cohort Study from Two Indonesian Referral Hospitals'

description: This is database of retrospective cohort study to evaluate for the Risk Factors and Mortality Outcomes of Extended-Spectrum Beta-Lactamase-Producing Escherichia coli in Bacteremia patients. The sample was conducted using the medical records of all inpatients from January to December 2019 at two referral hospitals in Jakarta, Indonesia, namely Cipto Mangunkusumo National Hospital and Persahabatan Central General Hospital. This study is approved by the Ethics Commission of The National Institute of Health Research and Development (LB.02.01/2/KE.184/2018), the Health Research Ethics Committee of the Faculty of Medicine, Universitas Indonesia-Cipto Mangunkusumo National Hospital (KET-169/UN2.F1/ETIK/PPM.00.02/2022), and the Health Research Ethics Committee of Persahabatan Central General Hospital (42/KEPK-RSUPP/07/2018). 
The target population was patients with positive E. coli blood cultures which were taken once during hospitalization in all age groups. Patients who were treated for less than 48 hours, had negative E. coli blood cultures or with incomplete medical record data were excluded. Positive E. coli blood cultures were phenotypically differentiated into ESBL- and non-ESBL-producing colonies using the VITEK®2 compact system algorithm (bioMérieux, France). Patient characteristics, length of stay, source of infection, comorbidity, and several risk factor variables for ESBL-producing E. coli infection including age, history of antibiotic therapy, utilization of medical devices, Charlson Comorbidity Index (CCI), and history of hospitalization.
DOI: 10.5066/p9mw5kzb
title: Rio Grande 2012 Vegetation and Water Classification Data in the Big Bend Region

description: These data are spatial polygon data and remote sensing image-based classification maps of surface water and vegetation species for 2012 along the Rio Grande River in Big Bend National Park in Texas. The geographic extent of the classification spans from the end of Mariscal Canyon to 5 km after the end of Boquillas Canyon, totaling approximately 77 Km of the river. The maps are also restricted to a digitized extent of riparian vegetation that is defined by the alluvial valley of the Rio Grande River. The 2012 classification maps are created using 20 cm multispectral (Near Infrared (NIR), Red and Green) imagery and LiDAR data collected in June 2012. The accuracy assessment for the classification product is based on ground truth data collected in February 2019 and represents all ten species mapped.
DOI: 10.5281/zenodo.2789946
title: Xanthomonas citri ̶ Pest Report and Datasheet to support ranking of EU candidate priority pests

description: These two files are part of the outputs produced under the mandate M-2017-0056 of the European Commission requesting EFSA for technical assistance in the field of quarantine pests qualifying as priority pests as by Article 6(2) of the Regulation (EU) 2016/2031 <em>on protective measures against pests of plants</em>. Under the mandate EFSA produced: i) 1 methodology report (DOI available at the field "Related/alternate identifiers"), ii) 28 datasheets, one for each of the 28 candidate pests, and iii) 28 pest reports supporting the information provided in the datasheets. EFSA wishes to acknowledge the contribution of Jaime Cubero, Trond Rafoss, Christian Vernière, Antonio Vicent to the EKE and the review conducted by Marie-Agnès Jacques.
description: EU; XLS; alpha@efsa.europa.eu
DOI: 10.5281/zenodo.3504269
title: SFB genomes and annotations

description: This dataset contains sequence files for a Metagenome Assembled Genome (MAG) from human metagenomes, as well as 5 SFB reference genomes: GCF_000270205 Candidatus Arthromitus sp. SFB-mouse-Japan GCF_000283555 Candidatus Arthromitus sp. SFB-rat-Yit GCF_000284435 Candidatus Arthromitus sp. SFB-mouse-Yit GCF_000709435 Candidatus Arthromitus sp. SFB-mouse-NL GCF_001655775 Candidatus Arthromitus sp. SFB-turkey isolate UMNCA01 The dataset consists of 8 gzipped tar archives. Here's brief summary of their contents: <strong>sfb_abundance</strong>: Counts of mapped reads and normalized counts for each contig in 825 samples (see <strong>sfb_map</strong>) Files named 'raw_counts' are number of reads assigned to each contig while files named 'tpm' are counts normalized to Transcripts Per Million. The 'percontig' files show numbers per contig while raw_counts.tab and tpm.tab files have counts summed for each genome. <strong>sfb_abundance.cds</strong>: Counts of mapped reads and normalized counts as above but only for reads mapping to protein-coding regions. <strong>sfb_annotations</strong>: Annotation files, from running the prokka pipeline on the genomes and subsequently eggnog-mapper, pfam_scan and dbCAN. <strong>sfb_checkm</strong>: Results from running 'checkm lineage_wf' on the genomes. <strong>sfb_collated</strong>: Collated counts of annotations in each genome. <strong>sfb_fastani</strong>: Results from running fastANI on the genomes, with subsequent clustering of genomes based on 75% overlap and 95% ANI. <strong>sfb_gtdb</strong>: Results from the 'gtdbtk classify_wf' on the genomes. This shows how the genomes are classified against the Genome Taxonomy Database (release86). <strong>sfb_gtdb_denovo</strong>: Phylogeny as created using the following command on the genomes. <pre><code class="language-bash">gtdbtk de_novo_wf --bac120_ms --outgroup_taxon p__Patescibacteria -x .fna --cpus 20 --rnd_seed 123</code></pre> <strong>sfb_map</strong>: Results from mapping reads from 825 samples to the 6 genomes. Reads were aligned using bowtie2 with '--very-sensitive --no-unal' settings and '--score-min C,0,0' to only report reads aligning without mismatches.Output was sorted by position and duplicates removed using MarkDuplicates of the picard tools suite. The archive contains a single merged bam file ('sfb.bam') where each sample has been assigned a ReadGroup inferred from its file name. Note that this mapping step was performed to investigate the presence of the SFB MAG in other metagenomes and was not part of the actual binning step. <strong>SFB.unoise.vsearch.tsv: </strong>Count table of amplified 16S sequence variants with one sample per column and one Amplicon Sequence Variant (ASV) per row. The sixth column shows the assigned taxonomy, and the seventh, the sequence. Total DNA was amplified with the universal bacterial 16S primer pair 341f-805r. Primer sequences and low quality bases were removed from the raw reads with Cutadapt. ASVs were picked using Unoise3 with standard parameters. Taxonomy was assigned by the SINA classifier, based on the SILVA database v132.
DOI: 10.5281/zenodo.4011907
title: Structural role of essential light chains in the apicomplexan glideosome models

description: Presented here are the modelled structures of TgMyoA motor and neck domain bound to MLC1 and TgELC1 or TgELC2. 10 complexes: 5 with TgELC1 5 with TgELC2 In these complexes: TgELC1/2 has chain label A MLC1 has chain label B TgMyoA has chain label C All models contain hydrogens All complexes were energy minimized (1000 steps) in explicit solvent Details of the modeling procedure in the main text of the associated paper