cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22545844.v1
title: Human activities and species biological traits drive the long-term persistence of old trees in human-dominated landscapes

description: This is the dataset of the paper "Human activities and species biological traits drive the long-term persistence of old trees in human-dominated landscapes", published in Nature Plants.
DOI: 10.6084/m9.figshare.22545844
title: Human activities and species biological traits drive the long-term persistence of old trees in human-dominated landscapes

description: This is the dataset of the paper "Human activities and species biological traits drive the long-term persistence of old trees in human-dominated landscapes", published in Nature Plants.
DOI: 10.6084/m9.figshare.21756122.v1
title: In vivo metallophilic self-assembly of a light-activated anticancer drug

description: this upload is the complete dataset for the paper entitled "In vivo metallophilic self-assembly of a light-activated anticancer drug" accepted for publication in Nature Chemistry.
DOI: 10.6084/m9.figshare.21756122
title: In vivo metallophilic self-assembly of a light-activated anticancer drug

description: this upload is the complete dataset for the paper entitled "In vivo metallophilic self-assembly of a light-activated anticancer drug" accepted for publication in Nature Chemistry.
DOI: 10.6084/m9.figshare.21902271.v1
title: CARMA is a novel Bayesian model for fine-mapping in meta-analysis studies

description: This is a method describing a Bayesian model for fine-mapping.
DOI: 10.6084/m9.figshare.21902271
title: CARMA is a novel Bayesian model for fine-mapping in meta-analysis studies

description: This is a method describing a Bayesian model for fine-mapping.
DOI: 10.6084/m9.figshare.22591273.v1
title: Alternative promoters in CpG depleted regions are prevalently associated with epigenetic misregulation of liver cancer transcriptomes

description: Transcriptional regulation is commonly governed by alternative promoters. However, the regulatory architecture in alternative and reference promoters, and how they differ, remains elusive. In 100 CAGE-seq libraries from hepatocellular carcinoma patients, we annotate 4083 alternative promoters in 2926 multi-promoter genes, which are largely undetected in normal livers. These genes are enriched in oncogenic processes and predominantly show association with overall survival. Alternative promoters are narrow nucleosome depleted regions, CpG island depleted, and enriched for tissue-specific transcription factors. Globally tumors lose DNA methylation. We show hierarchical retention of intragenic DNA methylation with CG-poor regions rapidly losing methylation, while CG-rich regions retain it, a process mediated by differential SETD2, H3K36me3, DNMT3B, and TET1 binding. This mechanism is validated in SETD2 knockdown cells and SETD2-mutated patients. Selective DNA methylation loss in CG-poor regions makes the chromatin accessible for alternative transcription. We show alternative promoters can control tumor transcriptomes and their regulatory architecture.
DOI: 10.6084/m9.figshare.22591273
title: Alternative promoters in CpG depleted regions are prevalently associated with epigenetic misregulation of liver cancer transcriptomes

description: Transcriptional regulation is commonly governed by alternative promoters. However, the regulatory architecture in alternative and reference promoters, and how they differ, remains elusive. In 100 CAGE-seq libraries from hepatocellular carcinoma patients, we annotate 4083 alternative promoters in 2926 multi-promoter genes, which are largely undetected in normal livers. These genes are enriched in oncogenic processes and predominantly show association with overall survival. Alternative promoters are narrow nucleosome depleted regions, CpG island depleted, and enriched for tissue-specific transcription factors. Globally tumors lose DNA methylation. We show hierarchical retention of intragenic DNA methylation with CG-poor regions rapidly losing methylation, while CG-rich regions retain it, a process mediated by differential SETD2, H3K36me3, DNMT3B, and TET1 binding. This mechanism is validated in SETD2 knockdown cells and SETD2-mutated patients. Selective DNA methylation loss in CG-poor regions makes the chromatin accessible for alternative transcription. We show alternative promoters can control tumor transcriptomes and their regulatory architecture.
DOI: 10.6084/m9.figshare.22634602.v1
title: Quantum dynamical effects of vibrational strong coupling in chemical reactivity

description: Source data for "Quantum dynamical effects of vibrational strong coupling in chemical reactivity".
DOI: 10.6084/m9.figshare.22634602
title: Quantum dynamical effects of vibrational strong coupling in chemical reactivity

description: Source data for "Quantum dynamical effects of vibrational strong coupling in chemical reactivity".
DOI: 10.6084/m9.figshare.22580599
title: Comparing ecosystem gaseous elemental mercury fluxes over a deciduous and coniferous forest

description: The ecosytem-level elemental gasous mercury fluxes in the coniferous forest (Howaland forest).
DOI: 10.6084/m9.figshare.22565134.v1
title: Ultrafast charge transfer of 1D nanowire pattern/2D flake heterostructures for attomolar-level molecular sensing

description: Out manuscript propose a method to synthesize mixed-dimensional heterostructures, which achieves an ultrasensitive molecular sensing performance attributed to the efficient charge transfer.
DOI: 10.6084/m9.figshare.22565134
title: Ultrafast charge transfer of 1D nanowire pattern/2D flake heterostructures for attomolar-level molecular sensing

description: Out manuscript propose a method to synthesize mixed-dimensional heterostructures, which achieves an ultrasensitive molecular sensing performance attributed to the efficient charge transfer.
DOI: 10.5281/zenodo.7926166
title: Soil moisture and GPP trends across the Avocado "Green Gold" Belt in central Mexico (2001-2018)

description: Data processing in RStudio for soil moisture and Gross Primary Productivity trends across the Avocado “Green Gold” Belt in central Mexico (2001-2018).
DOI: 10.5281/zenodo.7926165
title: Soil moisture and GPP trends across the Avocado "Green Gold" Belt in central Mexico (2001-2018)

description: Data processing in RStudio for soil moisture and Gross Primary Productivity trends across the Avocado “Green Gold” Belt in central Mexico (2001-2018).
DOI: 10.5281/zenodo.7927598
title: MUSES Fractional Vegetation Coverage (FVC) Monthly Global 1km SIN Grid in 2016

description: The MUltiscale Satellite remotE Sensing (MUSES) product suite includes products with different spatial and temporal resolutions for parameters such as Normalized Difference Vegetation Index (NDVI), Near-Infrared Reflectance of Vegetation (NIRv), Leaf Area Index (LAI), Fraction of Absorbed Photosynthetically Active Radiation (FAPAR), Fractional Vegetation Coverage (FVC), Gross Primary Production (GPP), Net Primary Production (NPP). For more information about the MUSES products, please refer to this website (https://muses.bnu.edu.cn/). This dataset is the MUSES global FVC product at 1 km spatial resolution and monthly temporal resolution. The MUSES FVC product is provided on a Sinusoidal grid and spans from 2000 to 2019 (continuously updated). It was generated from the MUSES LAI product at 1 km resolution and other ancillary information using the complement to unity of the transmittance of light through the entire canopy in the nadir viewing direction (Xiao <em>et al</em>., 2016). The MUSES FVC values are physically consistent with the corresponding MUSES LAI values. The MUSES FVC product is spatially complete and temporally continuous. This dataset is the MUSES FVC product in 2016. <em>Please <strong>click here</strong> to download the MUSES FVC product <strong>in 2015</strong></em>, <em>and <strong>click here</strong> to download the MUSES FVC product <strong>in 2017</strong></em>. <strong>Dataset Characteristics:</strong> Spatial Coverage: Global Temporal Coverage: 2016 Spatial Resolution: 1 km Temporal Resolution: 1 month Projection: Sinusoidal Data Format: HDF Scale: 0.004 Valid Range: 0 – 250 <strong>Citation </strong>(Please cite this paper whenever these data are used)<strong>:</strong> Xiao Zhiqiang, <em>et a</em>l. (2016). Estimating the Fractional Vegetation Cover from GLASS Leaf Area Index Product. <em>Remote Sensing</em>, 8, 337. If you have any questions, please contact Prof. Zhiqiang Xiao (zhqxiao@bnu.edu.cn).
DOI: 10.5281/zenodo.7927597
title: MUSES Fractional Vegetation Coverage (FVC) Monthly Global 1km SIN Grid in 2016

description: The MUltiscale Satellite remotE Sensing (MUSES) product suite includes products with different spatial and temporal resolutions for parameters such as Normalized Difference Vegetation Index (NDVI), Near-Infrared Reflectance of Vegetation (NIRv), Leaf Area Index (LAI), Fraction of Absorbed Photosynthetically Active Radiation (FAPAR), Fractional Vegetation Coverage (FVC), Gross Primary Production (GPP), Net Primary Production (NPP). For more information about the MUSES products, please refer to this website (https://muses.bnu.edu.cn/). This dataset is the MUSES global FVC product at 1 km spatial resolution and monthly temporal resolution. The MUSES FVC product is provided on a Sinusoidal grid and spans from 2000 to 2019 (continuously updated). It was generated from the MUSES LAI product at 1 km resolution and other ancillary information using the complement to unity of the transmittance of light through the entire canopy in the nadir viewing direction (Xiao <em>et al</em>., 2016). The MUSES FVC values are physically consistent with the corresponding MUSES LAI values. The MUSES FVC product is spatially complete and temporally continuous. This dataset is the MUSES FVC product in 2016. <em>Please <strong>click here</strong> to download the MUSES FVC product <strong>in 2015</strong></em>, <em>and <strong>click here</strong> to download the MUSES FVC product <strong>in 2017</strong></em>. <strong>Dataset Characteristics:</strong> Spatial Coverage: Global Temporal Coverage: 2016 Spatial Resolution: 1 km Temporal Resolution: 1 month Projection: Sinusoidal Data Format: HDF Scale: 0.004 Valid Range: 0 – 250 <strong>Citation </strong>(Please cite this paper whenever these data are used)<strong>:</strong> Xiao Zhiqiang, <em>et a</em>l. (2016). Estimating the Fractional Vegetation Cover from GLASS Leaf Area Index Product. <em>Remote Sensing</em>, 8, 337. If you have any questions, please contact Prof. Zhiqiang Xiao (zhqxiao@bnu.edu.cn).
DOI: 10.18716/dch/a.00000013
title: Toboliu Project first funding period data

description: This package contains all the data collected during the period 1.09.2020-6.04.2023 within the DFG-funded project, along with presentations and analyses. There are folders for each fieldwork campaign containing all the data collected during these campaigns along with the data resulted after post-processing.
DOI: 10.6084/m9.figshare.22810316
title: GWAS dataset for some Iranian bread wheats

description: GWAS dataset for some Iranian bread wheats
DOI: 10.6084/m9.figshare.22810366
title: Supplementary figure 1;Supplementary table 1;Supplementary video 1;Supplementary video 2 from Copulatory behaviour and genital mechanics suggest sperm allocation by a non-intromittent sclerite in a pholcid spider

description: Raincloud plot showing the duration of copulation in the virgin and mated female groups. Each box plot shows the median (second quartile) ± one quartile. Whiskers show 1.5 times the interquartile range. Each box plot is associated with its corresponding density plot. Dots represent the raw data.;Overview of pholcid species where copulatory mechanics is described up to date.;Courtship and precopulatory behaviour of Gertschiola neuquena.;Copulation and copulatory behaviour of Gertschiola neuquena emphasising pedipalp position and movements. Note the emergence of sperm at the end of the video.
DOI: 10.6084/m9.figshare.22810366.v1
title: Supplementary figure 1;Supplementary table 1;Supplementary video 1;Supplementary video 2 from Copulatory behaviour and genital mechanics suggest sperm allocation by a non-intromittent sclerite in a pholcid spider

description: Raincloud plot showing the duration of copulation in the virgin and mated female groups. Each box plot shows the median (second quartile) ± one quartile. Whiskers show 1.5 times the interquartile range. Each box plot is associated with its corresponding density plot. Dots represent the raw data.;Overview of pholcid species where copulatory mechanics is described up to date.;Courtship and precopulatory behaviour of Gertschiola neuquena.;Copulation and copulatory behaviour of Gertschiola neuquena emphasising pedipalp position and movements. Note the emergence of sperm at the end of the video.
DOI: 10.34740/kaggle/dsv/5668035
title: Healthy-Defective-Fruits
DOI: 10.5281/zenodo.7226804
title: Zenodo package for Mao et al. 2022, ApJ, 940, 41

description: The supplementary materials here contain SPEX data, command files to reproduce fitting results, and python3 notebooks to reproduce figures in the MR 2251-178 paper (Mao et al. 2022, ApJ, 940, 41). ADS link: https://ui.adsabs.harvard.edu/abs/2022ApJ...940...41M/abstract
DOI: 10.5281/zenodo.7226803
title: Zenodo package for Mao et al. 2022, ApJ, 940, 41

description: The supplementary materials here contain SPEX data, command files to reproduce fitting results, and python3 notebooks to reproduce figures in the MR 2251-178 paper (Mao et al. 2022, ApJ, 940, 41). ADS link: https://ui.adsabs.harvard.edu/abs/2022ApJ...940...41M/abstract
DOI: 10.34740/kaggle/dsv/5668146
title: Healthy-Defective-Fruits
DOI: 10.5281/zenodo.7063875
title: Bias adjusted and statistically down-scaled ISIMIP3b for historical and hist-nat experiments over Central Asia

description: Downscaling and bias adjustment have been conducted by the BASD software. For a comprehensive description of version 1.0 of the methods see Lange (2019, doi:10.5194/gmd-12-3055-2019). The models are: canesm5_r1i1p1f1 cnrm-cm6-1_r1i1p1f2 gfdl-esm4_r1i1p1f1 ipsl-cm6a-lr_r1i1p1f1 miroc6_r1i1p1f1 mri-esm2-0_r1i1p1f1 the variables are tas- daily mean of near surface air temperature (K) pr - daily precipitation (kg m-2 s-1 ) the final horizontal resolution is 0.25° and the area covered longitude 44.125 -90.875 & latitude 33.125-56.375
description: The reference article: Fallah, B., Russo, E., Menz, C. et al. Anthropogenic influence on extreme temperature and precipitation in Central Asia. Sci Rep 13, 6854 (2023). https://doi.org/10.1038/s41598-023-33921-6
DOI: 10.5281/zenodo.7063876
title: Bias adjusted and statistically down-scaled ISIMIP3b for historical and hist-nat experiments over Central Asia

description: Downscaling and bias adjustment have been conducted by the BASD software. For a comprehensive description of version 1.0 of the methods see Lange (2019, doi:10.5194/gmd-12-3055-2019). The models are: canesm5_r1i1p1f1 cnrm-cm6-1_r1i1p1f2 gfdl-esm4_r1i1p1f1 ipsl-cm6a-lr_r1i1p1f1 miroc6_r1i1p1f1 mri-esm2-0_r1i1p1f1 the variables are tas- daily mean of near surface air temperature (K) pr - daily precipitation (kg m-2 s-1 ) the final horizontal resolution is 0.25° and the area covered longitude 44.125 -90.875 & latitude 33.125-56.375
description: The reference article: Fallah, B., Russo, E., Menz, C. et al. Anthropogenic influence on extreme temperature and precipitation in Central Asia. Sci Rep 13, 6854 (2023). https://doi.org/10.1038/s41598-023-33921-6
DOI: 10.6084/m9.figshare.13241972.v5
title: BUDDY. A database to compare life history strategies across ectotherms.

description: <strong>What is BUDDY about?</strong> How can we predict how populations respond to the ever greater changes in their environment? Within this project, we want to know which characteristics of organisms relate to population responses to environmental change. One way to find out is to analyse life history patterns using demographic models. However, depending on whether you model individual life histories from phenomenological descriptions (Salguero-Gomez et al. 2016; Paniw et al. 2018; Capdevila et al 2020) or from mechanistic descriptions using energy budget models (Smallegange et al. in press; Smallegange & Berg 2019), different predictions are obtained. <br> This project aims to (i) unravel if energy budget descriptions of individual life histories consistently return different predictions on population responses to environmental change compared to when individual life histories are represented by statistical functions, (ii) understand why that is the case, and (iii) identify the most accurate way to predict population responses to novel environmental change. To this end, we support Bachelor, Master and PhD student projects in which students answer their own research questions, while at the same time expanding the DEB-IPM database to ultimately conduct large, cross-taxonomical life history analyses.
DOI: 10.6084/m9.figshare.13241972.v4
title: DEB-IPM project. Database of DEB-IPM model parameters.

description: <b>What is the DEB-IPM project about?</b> How can we predict how populations respond to the ever greater changes in their environment? Within this project, we want to know which characteristics of organisms relate to population responses to environmental change. One way to find out is to analyse life history patterns using demographic models. However, depending on whether you model individual life histories from phenomenological descriptions (Salguero-Gomez et al. 2016; Paniw et al. 2018; Capdevila et al 2020) or from mechanistic descriptions using energy budget models (Smallegange et al. in press; Smallegange & Berg 2019), different predictions are obtained. <br>The DEB-IPM project aims to (i) unravel if energy budget descriptions of individual life histories consistently return different predictions on population responses to environmental change compared to when individual life histories are represented by statistical functions, (ii) understand why that is the case, and (iii) identify the most accurate way to predict population responses to novel environmental change. To this end, we support Bachelor, Master and PhD student projects in which students answer their own research questions, while at the same time expanding the DEB-IPM database to ultimately conduct large, cross-taxonomical life history analyses.
DOI: 10.57841/casdc.0000557
title: 偏振调控微纳超表面仿真数据集
DOI: 10.57841/casdc.0000558
title: 六角结构的金属Zr与Janus二维材料的接触结构数据集
DOI: 10.25921/0ze2-tv14
title: EK80 Water Column Sonar Data Collected During PC2204
DOI: 10.57841/casdc.0000559
title: 面心立方结构的金属与Janus二维材料的接触结构数据集
DOI: 10.57841/casdc.0000560
title: 量子输运器件模拟数据集
DOI: 10.15151/esrf-es-1061179502
title: Cryo-electron microscopy EPN BAG

description: At the EPN campus level structural biology work is carried out in all the 4 institutes (IBS, ESRF, ILL and EMBL). Today all structural biology groups are turning to cryo-EM. The EM demand is therefore extremely high and present in the 4 Institutes. In a nutshell, there are more than 45 PIs that could benefit from Krios time on the EPN campus (more than 90 different samples). Around 20 % of the sample are ready for high resolution data collection with already prepared grids that have been pre-screened on Glacios microscopes. Whereas some work could be carried out on Glacios microscopes, for difficult samples the use of a krios is indispensable (heterogeneous sample or limited concentration requiring a large number of images; small protein etc). Only these samples will be selected for Krios time at the BAG level
DOI: 10.5281/zenodo.7928253
title: Consumer perception survey of CSR, Serviceability, perceived quality, social quality, customer satisfaction, customer loyalty in Automobile industiry

description: We are very pleased to be able to contribute to your research and ensure the transparency of data in our research,too. I sincerely hope that this field will continue to develop in the future.
DOI: 10.5281/zenodo.7928252
title: Consumer perception survey of CSR, Serviceability, perceived quality, social quality, customer satisfaction, customer loyalty in Automobile industiry

description: We are very pleased to be able to contribute to your research and ensure the transparency of data in our research,too. I sincerely hope that this field will continue to develop in the future.
DOI: 10.5281/zenodo.7928172
title: The data files for the article "Impact of the core deformation on the tidal heating and flow in Enceladus' subsurface ocean"

description: The data are given for each figure and each file contains a header regarding information on the columns in the data files.
DOI: 10.5281/zenodo.7928171
title: The data files for the article "Impact of the core deformation on the tidal heating and flow in Enceladus' subsurface ocean"

description: The data are given for each figure and each file contains a header regarding information on the columns in the data files.
DOI: 10.6084/m9.figshare.22308928
title: Goodness-of-fit tests for Laplace, Gaussian and exponential power distributions based on <i>λ</i>-th power skewness and kurtosis

description: Temperature data, like many other measurements in quantitative fields, are usually modelled using a normal distribution. However, some distributions can offer a better fit while avoiding underestimation of tail event probabilities. To this point, we extend Pearson's notions of skewness and kurtosis to build a powerful family of goodness-of-fit tests based on Rao's score for the exponential power distribution EPDλ(μ,σ), including tests for normality and Laplacity when <i>λ</i> is set to 1 or 2. We find the asymptotic distribution of our test statistic, which is the sum of the squares of two <i>Z</i>-scores, under the null and under local alternatives. We also develop an innovative regression strategy to obtain <i>Z</i>-scores that are nearly independent and distributed as standard Gaussians, resulting in a χ22 distribution valid for any sample size (up to very high precision for n≥20). The case λ=1 leads to a powerful test of fit for the Laplace(μ,σ) distribution, whose empirical power is superior to all 39 competitors in the literature, over a wide range of 400 alternatives. Theoretical proofs in this case are particularly challenging and substantial. We applied our tests to three temperature datasets. The new tests are implemented in the R package PoweR.
DOI: 10.6084/m9.figshare.22308928.v3
title: Goodness-of-fit tests for Laplace, Gaussian and exponential power distributions based on <i>λ</i>-th power skewness and kurtosis

description: Temperature data, like many other measurements in quantitative fields, are usually modelled using a normal distribution. However, some distributions can offer a better fit while avoiding underestimation of tail event probabilities. To this point, we extend Pearson's notions of skewness and kurtosis to build a powerful family of goodness-of-fit tests based on Rao's score for the exponential power distribution EPDλ(μ,σ), including tests for normality and Laplacity when <i>λ</i> is set to 1 or 2. We find the asymptotic distribution of our test statistic, which is the sum of the squares of two <i>Z</i>-scores, under the null and under local alternatives. We also develop an innovative regression strategy to obtain <i>Z</i>-scores that are nearly independent and distributed as standard Gaussians, resulting in a χ22 distribution valid for any sample size (up to very high precision for n≥20). The case λ=1 leads to a powerful test of fit for the Laplace(μ,σ) distribution, whose empirical power is superior to all 39 competitors in the literature, over a wide range of 400 alternatives. Theoretical proofs in this case are particularly challenging and substantial. We applied our tests to three temperature datasets. The new tests are implemented in the R package PoweR.