cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28703472
title: Additional file 7 of Seasonal dynamics and factors shaping microbiomes in freshwater finfish earthen aquaculture ponds in Bangladesh

description: Supplementary Material 7: Additional file 7. Table S6. Mean relative abundance and pairwise comparison of bacterial phyla and families in different culture systems. Mean relative abundance (Mean RA), Standard deviation (SD), and Standard error of the mean (SEM) were calculated for the top 10 phyla and families for pangasius monoculture and polyculture systems; tilapia monoculture and polyculture system; and for pangasius and tilapia (only for those ponds where single species was maintained). Kruskal-Wallis tests were performed using the relative abundance of each phylum/family to compare the difference between groups, with relative abundance values calculated for each phylum/family within each sample. ns = not-significant, *: p-value &lt; 0.05; **: p-value &lt; 0.01; ***: p-value &lt; 0.001; ****: p-value &lt; 0.0001.
DOI: 10.6084/m9.figshare.28703472.v1
title: Additional file 7 of Seasonal dynamics and factors shaping microbiomes in freshwater finfish earthen aquaculture ponds in Bangladesh

description: Supplementary Material 7: Additional file 7. Table S6. Mean relative abundance and pairwise comparison of bacterial phyla and families in different culture systems. Mean relative abundance (Mean RA), Standard deviation (SD), and Standard error of the mean (SEM) were calculated for the top 10 phyla and families for pangasius monoculture and polyculture systems; tilapia monoculture and polyculture system; and for pangasius and tilapia (only for those ponds where single species was maintained). Kruskal-Wallis tests were performed using the relative abundance of each phylum/family to compare the difference between groups, with relative abundance values calculated for each phylum/family within each sample. ns = not-significant, *: p-value &lt; 0.05; **: p-value &lt; 0.01; ***: p-value &lt; 0.001; ****: p-value &lt; 0.0001.
DOI: 10.6084/m9.figshare.28703475
title: Additional file 8 of Seasonal dynamics and factors shaping microbiomes in freshwater finfish earthen aquaculture ponds in Bangladesh

description: Supplementary Material 8: Additional file 8. Table S7. Mean relative abundance and pairwise comparison of bacterial families across the different geographical locations. Mean relative abundance (Mean RA), Standard deviation (SD), and Standard error of the mean (SEM) were calculated at different upazila for pangasius and tilapia. Kruskal-Wallis test followed by the post hoc Dunn test was performed using the relative abundance of each family to compare the difference between groups, with relative abundance values calculated for each family within each sample. ns = not-significant, *: p-value &lt; 0.05; **: p-value &lt; 0.01; ***: p-value &lt; 0.001; ****: p-value &lt; 0.0001.
DOI: 10.6084/m9.figshare.28703475.v1
title: Additional file 8 of Seasonal dynamics and factors shaping microbiomes in freshwater finfish earthen aquaculture ponds in Bangladesh

description: Supplementary Material 8: Additional file 8. Table S7. Mean relative abundance and pairwise comparison of bacterial families across the different geographical locations. Mean relative abundance (Mean RA), Standard deviation (SD), and Standard error of the mean (SEM) were calculated at different upazila for pangasius and tilapia. Kruskal-Wallis test followed by the post hoc Dunn test was performed using the relative abundance of each family to compare the difference between groups, with relative abundance values calculated for each family within each sample. ns = not-significant, *: p-value &lt; 0.05; **: p-value &lt; 0.01; ***: p-value &lt; 0.001; ****: p-value &lt; 0.0001.
DOI: 10.3535/1dr-yfs-5xs
title: Amorphognathus tvaerensis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cqe-4s6-trl
title: Amorphognathus tvaerensis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z4y-4s1-p51
title: Amorphognathus tvaerensis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28494134.v2
title: Data for the article pepin et al. (<b>Evaluation of parasitic contamination and effects on estimates of mitochondrial enzymatic activities in infected fish livers</b>)

description: Parasites can impair host performance through various physiological processes, including alterations to host metabolism. Since mitochondria are responsible for cellular energy production, it is likely that disruptions in host cellular metabolism contribute to changes in metabolism at the organismal level. However, some studies investigating parasite-induced alteration in cellular metabolism have not taken the presence of parasites in the target tissues into account, potentially biasing results. It is therefore critical to confirm that the measured enzyme activities reflect those of the hosts rather than the parasites themselves. Here, we tested a parasite extraction protocol to evaluate the extent to which parasite contamination impacts estimates of cellular enzyme activities in hepatic tissues of wild pumpkinseed sunfish (<i>Lepomis gibbosus</i>) infected with bass tapeworm cestodes (<i>Proteocephalus ambloplitis</i>). We tested four treatments: uninfected livers, cleaned infected livers, infected livers (repopulated) and parasites alone. We then compared the activity of key metabolic enzymes among groups. PCR tests were used to assess parasitic contamination of samples after applying the parasite extraction protocol on hepatic tissue. Enzyme activities of cleaned livers and contaminated livers were similar despite PCR tests revealing contamination. The intensity of cestode infection also did not influence enzyme activity, which suggests that parasite presence in liver tissues does not impact the accuracy of the enzyme activity estimates. These results suggest that studying the organs of heavily parasitized individuals is possible. Nevertheless, we recommend that our cleaning protocol is applied to infected organs to avoid any perception of biases in highly infected individuals.
DOI: 10.17632/swxgg9ns6n
title: To explore the potential combined treatment strategy for colorectal cancer: inhibition of cancer stem cells and enhancement of intestinal immune microenvironment

description: Experimental raw data:
Figure 1: Mouse intestinal tissue, body weight, survival rate, HE
Figure 2: 16s rDNA
Figure 3: short-chain fatty acids
Figure 4: Immunohistochemistry
Figure 5: Western Blot
DOI: 10.3535/5fh-e79-w9f
title: Amorphognathus tvaerensis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kww-3ey-e18
title: Amorphognathus tvaerensis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.c.3803704_d10.v1
title: Additional file 5: of The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants

description: Nucleotide CMT sequences in fasta format. (FAA 619 kb)
DOI: 10.3535/qpl-wep-44z
title: Amorphognathus tvaerensis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rxf-3l9-fg5
title: Amorphognathus tvaerensis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22040828.v4
title: phenology_Hainich_2000_2020.zip

description: This dataset of the phenology of the Hainich National Park, Germany, from 2000 to 2020, determined via different methodologies, belongs to the paper "<b>Decoding autumn phenology: Unraveling the link between observation methods and detected environmental cues</b>", which was submitted to <i>Global Change Biology</i><i>.</i>
DOI: 10.25387/g3.6221921.v1
title: Supplemental Material for Feulner et al., 2018

description: Table S1: List of genes overlapping the mapping interval on Pun-LG10 (Ore-LG23). Gene position as annotated in <i>Pundamilia</i>(v2.0) annotation file based on NCBI annotations using Uni-Prot.
DOI: 10.3535/4a9-bph-pv1
title: Amorphognathus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4c0-hds-71s
title: Amorphognathus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25201394.v1
title: 16S_V4_representative_sequences.fa

description: V4 16S rDNA representative sequences (ASVs) in fasta format from the dimictic freshwater lake Roś, Masurian Lakeland, Poland.
DOI: 10.3535/k7m-tgg-h0g
title: Amorphognathus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21608397.v1
title: An Ontology for the Formal Representation of Case Knowledge in the Hydrologic Modeling Domain

description: Hydrologic Modeling Case Ontology hydrocase.owl : ontology in RDF/XML syntax hydrocase.ttl : ontology in Turtle syntax
DOI: 10.3535/1bd-csp-eg8
title: Amorphognathus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/k18-egj-24l
title: Amorphognathus viirae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/s87-e2k-819
title: Amorphognathus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vvk-paj-qat
title: Amorphognathus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.c.3685249_d8.v1
title: Additional file 12: Table S9. of Differential long noncoding RNA/mRNA expression profiling and functional network analysis during osteogenic differentiation of human bone marrow mesenchymal stem cells

description: The primer sequences used for qRT-PCR. (XLS 30 kb)
DOI: 10.3535/rjw-0k5-53y
title: Amorphognathus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wrw-atj-hc4
title: Amorphognathus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25803070.v1
title: Supplementary material for: Zozaya SM, Case DW & Hoskin CJ (2024). <i>Ctenotus rungulla</i> sp. nov. (Scincidae; Sphenomorphinae), a new sandstone-associated skink that highlights reptile endemism in Queensland's Gregory Range. Australian Journal of Taxonomy 67: 1–16. doi: https://doi.org/10.54102/ajt.g26vt

description: Supplementary tables and data for Zozaya SM, Case DW & Hoskin CJ (2024). <i>Ctenotus rungulla</i> sp. nov. (Scincidae; Sphenomorphinae), a new sandstone-associated skink that highlights reptile endemism in Queensland's Gregory Range. Australian Journal of Taxonomy 67: 1–16. doi: https://doi.org/10.54102/ajt.g26vtFiles include: (i) Supplementary Tables (.doc); (ii) morphological data, including geographic coordinates (.csv); (iii) ND4 DNA alignments (.fasta); (iv) pairwise sequence dissimiliatrity among samples for the ND4 locus; (v) ND4 phylogeny inferred using IQ-TREE (.tree).
DOI: 10.6084/m9.figshare.27157928.v1
title: Additional file 3 of Whole-genome sequencing of non-typeable Haemophilus influenzae isolated from a tertiary care hospital in Surabaya, Indonesia

description: Additional file 3. Virulence factors presence-absence of 10 non-typeable Haemophilus influenzae.
DOI: 10.6084/m9.figshare.28703507
title: Additional file 1 of Comprehensive molecular epidemiology of Acinetobacter baumannii from diverse sources in Nigeria

description: Supplementary Material 1: table 1. Eligible A. baumannii Whole Genome Sequence Extracted Data. This supplementary file contains the raw data considered in the Data analysis, result sub-section. This entails a total of 189 genomes of Nigerian A. baumannii retrieved from NCBI (n = 28) and ENA (n = 161).
DOI: 10.6084/m9.figshare.28703507.v1
title: Additional file 1 of Comprehensive molecular epidemiology of Acinetobacter baumannii from diverse sources in Nigeria

description: Supplementary Material 1: table 1. Eligible A. baumannii Whole Genome Sequence Extracted Data. This supplementary file contains the raw data considered in the Data analysis, result sub-section. This entails a total of 189 genomes of Nigerian A. baumannii retrieved from NCBI (n = 28) and ENA (n = 161).
DOI: 10.6084/m9.figshare.28703510
title: Additional file 2 of Comprehensive molecular epidemiology of Acinetobacter baumannii from diverse sources in Nigeria

description: Supplementary Material 2: table 2. Multilocus Sequence Typing Pasteur Scheme of Eligible A. baumannii Whole Genome Sequence. This supplementary file is the raw data considered for the Multilocus Sequence Typing Pasteur Scheme of Eligible A. baumannii Whole Genome Sequence in the MLST analysis, result sub-section.
DOI: 10.6084/m9.figshare.28703510.v1
title: Additional file 2 of Comprehensive molecular epidemiology of Acinetobacter baumannii from diverse sources in Nigeria

description: Supplementary Material 2: table 2. Multilocus Sequence Typing Pasteur Scheme of Eligible A. baumannii Whole Genome Sequence. This supplementary file is the raw data considered for the Multilocus Sequence Typing Pasteur Scheme of Eligible A. baumannii Whole Genome Sequence in the MLST analysis, result sub-section.
DOI: 10.6084/m9.figshare.28703513
title: Additional file 3 of Comprehensive molecular epidemiology of Acinetobacter baumannii from diverse sources in Nigeria

description: Supplementary Material 3: table 3. Multilocus Sequence Typing Oxford Scheme of Eligible A. baumannii Whole Genome Sequence. This supplementary file is the raw data considered for the Multilocus Sequence Typing Oxford Scheme of Eligible A. baumannii Whole Genome Sequence in the MLST analysis, result sub-section.
DOI: 10.6084/m9.figshare.28703513.v1
title: Additional file 3 of Comprehensive molecular epidemiology of Acinetobacter baumannii from diverse sources in Nigeria

description: Supplementary Material 3: table 3. Multilocus Sequence Typing Oxford Scheme of Eligible A. baumannii Whole Genome Sequence. This supplementary file is the raw data considered for the Multilocus Sequence Typing Oxford Scheme of Eligible A. baumannii Whole Genome Sequence in the MLST analysis, result sub-section.
DOI: 10.3535/qfn-qq6-hh4
title: Amorphognathus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ywr-dvt-t35
title: Amorphognathus viirae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25952791.v1
title: <b>Enhancing Circularly Polarized Electroluminescence through Energy Transfer within a Chiral Polymer Host</b>

description: Blends of a CP-TADF small molecule ((R)-BN-MDPA) and a chiral polymer (cPF8PhO8) are presented. Energy transfer from cPF8PhO8 to (R)-BN-MDPA is observed. gPL observed for (R)-BN-MDPA is substantially enhanced when blended in the chiral polymer host and a state-of-the-art gEL of 0.091 is demonstrated.
DOI: 10.6084/m9.figshare.28703516
title: Additional file 4 of Comprehensive molecular epidemiology of Acinetobacter baumannii from diverse sources in Nigeria

description: Supplementary Material 4: table 4. CgMLST of Eligible A. baumannii Whole Genome Sequence. This is the raw data used for the construction of the minimum spanning tree, as shown in Fig. 3.
DOI: 10.6084/m9.figshare.28703516.v1
title: Additional file 4 of Comprehensive molecular epidemiology of Acinetobacter baumannii from diverse sources in Nigeria

description: Supplementary Material 4: table 4. CgMLST of Eligible A. baumannii Whole Genome Sequence. This is the raw data used for the construction of the minimum spanning tree, as shown in Fig. 3.
DOI: 10.6084/m9.figshare.28703519
title: Additional file 5 of Comprehensive molecular epidemiology of Acinetobacter baumannii from diverse sources in Nigeria

description: Supplementary Material 5: Table 5. The Distribution of Antimicrobial Genes and their Phenotypes in the Eligible A. baumannii Whole Genome Sequence. This contains the raw data of AMR genes of Eligible A. baumannii Whole Genome Sequence used for Tables 1 and 2 in In-silico detection of antibiotic resistance genes in A. baumannii strains result, sub-section.
DOI: 10.6084/m9.figshare.28703519.v1
title: Additional file 5 of Comprehensive molecular epidemiology of Acinetobacter baumannii from diverse sources in Nigeria

description: Supplementary Material 5: Table 5. The Distribution of Antimicrobial Genes and their Phenotypes in the Eligible A. baumannii Whole Genome Sequence. This contains the raw data of AMR genes of Eligible A. baumannii Whole Genome Sequence used for Tables 1 and 2 in In-silico detection of antibiotic resistance genes in A. baumannii strains result, sub-section.
DOI: 10.6084/m9.figshare.28703522
title: Additional file 6 of Comprehensive molecular epidemiology of Acinetobacter baumannii from diverse sources in Nigeria

description: Supplementary Material 6: table 6. The Distribution of Virulence Genes, their Phenotypes in the Eligible A. baumannii Whole Genome Sequence. This contains the raw data of virulence genes of Eligible A. baumannii Whole Genome Sequence used for Table 3 in In-silico detection of virulence genes in A. baumannii strains result, sub-section.
DOI: 10.6084/m9.figshare.28703522.v1
title: Additional file 6 of Comprehensive molecular epidemiology of Acinetobacter baumannii from diverse sources in Nigeria

description: Supplementary Material 6: table 6. The Distribution of Virulence Genes, their Phenotypes in the Eligible A. baumannii Whole Genome Sequence. This contains the raw data of virulence genes of Eligible A. baumannii Whole Genome Sequence used for Table 3 in In-silico detection of virulence genes in A. baumannii strains result, sub-section.
DOI: 10.17632/r84m23jrzj
title: Ferreira et al., 2021 - Data table

description: This is the original data set (before outliers removal) used in the data analyses from the manuscript: "LPS regulates pro and anti-inflammatory cytokines, corticosterone, and melatonin in toads " published in Integrative Organismal Biology. https://doi.org/10.1093/iob/obab025
DOI: 10.3535/c8b-e4v-j8z
title: Amorphognathus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qzc-ln1-2qm
title: Amorphognathus viirae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16893643.v1
title: January 2021 Covid-19 Twitter Streaming Dataset

description: The file contains Tweet IDs* for COVID-19 related tweets collected in January, 2021 from Twitter's COVID-19 Streaming Endpoint via a custom script developed by the Social Media Lab (https://socialmedialab.ca/). Visit our interactive dashboard at https://stream.covid19misinfo.org/ for a preview and some general stats about this COVID-19 Twitter streaming dataset. For more info about Twitter's COVID-19 Streaming Endpoint, visit https://developer.twitter.com/en/docs/labs/covid19-stream/overview * Note: In accordance with Twitter API Terms, the dataset only includes Tweet IDs (as opposed to the actual tweets and associated metadata). To recollect tweets contained in this dataset, you can use programs such as Hydrator (https://github.com/DocNow/hydrator/) or the Python library Twarc (https://github.com/DocNow/twarc/).
DOI: 10.6084/m9.figshare.28523603.v1
title: patients

description: patients
DOI: 10.3535/2hb-4zp-yvh
title: Amorphognathus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/x4v-mk0-8zf
title: Amorphognathus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.c.3601475_d3.v1
title: Additional file 3: of GATA3-dependent cellular reprogramming requires activation-domain dependent recruitment of a chromatin remodeler

description: is a table listing differentially expressed TFs. (XLSX 64 kb)
DOI: 10.3535/02x-jlm-538
title: Amorphognathus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xke-smn-q1x
title: Amorphognathus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.6427976.v1
title: Functional reorganization of the conceptual brain system after deafness in early childhood

description: Using fMRI we identified brain areas involved in conceptual processing in deaf and hearing participants. We found stronger recruitment of superior and middle temporal cortex in deaf versus hearing participants during an animacy decision task.This region, which forms auditory cortex in hearing people according to a sound listening task, was also activated in deaf, when they observed sign language, but not when they observed non-verbal hand actions. These results indicate that conceptual processing in deaf compared to heraing people more strongly depends on language representations. Addtional enhanced activation in visual and motor regions of deaf versus hearing participants during animacy decisions and a more frequent report of visual and motor features in a property listing task suggest that the loss of the auditory channel is partially compensated by an increased importance of visual and motor information for constituting object knowlegde. <br>
DOI: 10.3535/b5y-shg-qap
title: Amorphognathus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cce-t4v-3g9
title: Amorphognathus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26892826.v1
title: CDA data_Ian Khama_government Facebook posts.docx

description: This dataset comprise all Facebook posts from the Seretse Khama Ian Khama and BWGovernment Facebook pages between 1 May 2018 until 31 December 2022. These Facebook posts relate to the fallout between Ian Khama and Mokgweetsi Masisi.
DOI: 10.6084/m9.figshare.3551964.v1
title: Supplement 1. R code example for fitting the Mantel test, permutational multivariate analysis of variance, and constrained analysis of principal coordinates in the vegan package of R.

description: File List Supplement1_Rcode_ModelFit.txt Description R code for fitting the three dissimilarity-based models described in the paper: Mantel test, permutational multivariate analysis of variance (PerMANOVA), and constrained analysis of principal coordinates (CAP). R code utilizes the functions within the vegan package.
DOI: 10.3535/f2v-9bs-dc7
title: Amorphognathus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vl6-bnp-h0b
title: Amorphognathus viirae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dzk-qpx-pmz
title: Amorphognathus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/s3e-wh4-96b
title: Amorphognathus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16809829.v3
title: S14

description: Data of Subject_14
DOI: 10.6084/m9.figshare.26023885.v1
title: Pollinator SVE, pollinator trait, and plant trait data

description: Pollinator single-visit effectiveness data gathered from primary sources and published in Page & Nicholson et al. (2021; DOI- 10.1002/ajb2.1764). Floral trait data (Herkogamy, Stigma-nectary distance, and qualitative scores of traits associated with greater restriction to access of floral resources) and pollinator trait data (Intertegular span and hairiness).
DOI: 10.6084/m9.figshare.8285954.v1
title: 5. Gridded OFP at 0.25 x 0.25 degree for 1990-2017

description: Gridded OFP at 0.25 x 0.25 degree for 1990, 1995, 2000, 2005, 2010, 2013-2017.