cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.0p2ngf1x9
title: Data from: Turning defence into offence? intrusion of cladoceran brood chambers by a green alga leads to reproductive failure

description: Microalgae are the foundation of aquatic food webs. Their ability to
 defend against grazers is paramount to their survival, and modulates their
 ecological functions. Here we report a novel anti-grazer strategy in the
 common green alga Chlorella vulgaris against two grazers, Daphnia magna
 and Simocephalus sp. The algal cells entered the brood chamber of both
 grazers, presumably using the brood current generated by the grazer’s
 abdominal appendages. Once inside, the alga densely colonised the eggs,
 significantly reducing reproductive success. The effect was apparent under
 continuous light or higher light intensity. The algal cells remained
 viable following removal from the brood chamber, continuing to grow when
 inoculated in fresh medium. No brood chamber colonisation was found when
 the grazers were fed the reference diet Raphidocelis subcapitata under the
 same experimental conditions, despite the fact that both algal species
 were readily ingested by the grazers and were small enough to enter their
 brood chambers. These observations suggest that C. vulgaris can directly
 inflict harm on the grazers’ reproductive structure. There is no known
 prior example of brood chamber colonisation by a microalgal prey; our
 results point to a new type of grazer-algae interaction in the plankton
 that fundamentally differs from other antagonistic ecological
 interactions.
description: Genetically
 identical <i>Daphnia magna</i> and <i>Simocephalus
 </i>sp. (Cladocera) used in this study were grown at 20±1°C, under
 an 18L:6D photoperiod and a light intensity of 70 µmol photons
 m<sup>-2</sup>s<sup>-1</sup>.  The
 cladocerans<i> </i>was fed ad libitum daily with an equal
 mixture of <i>C. vulgaris</i> and <i>R.
 subcapitata</i>.
DOI: 10.5061/dryad.xwdbrv1b6
title: DNA-metabarcoding reveals the importance of gelatinous zooplankton in the diet of Pandalus borealis, a keystone species in the Arctic

description: Information about the dietary composition of species is crucial to
 understand their position and role in the food web. Stomach content
 analysis (SCA) and stable isotope analysis (SIA) are commonly used to
 study marine trophic relationships. SCA can provide high taxonomic
 resolution but requires taxonomic expertise and frequently underestimates
 digestible taxa. SIA provides a time-integrated view of the dietary
 sources but often lacks in taxonomic resolution. The use of molecular
 approaches such as DNA-metabarcoding may alleviate these problems. Here,
 we used DNA-metabarcoding with universal primers for cytochrome c oxidase
 I (COI), to study the diet composition of the Northern shrimp (Pandalus
 borealis) from the Barents Sea, a keystone species in the Arctic region
 with large socio-economic importance. Across locations, jellyfish and
 chaetognaths were the most important components in the diet of P.
 borealis, jointly accounting for 40-60% of the total read abundance. This
 dietary importance of gelatinous zooplankton contrasts sharply with
 published results based on SCA. At the same time, diet composition
 differed between fjord and shelf locations, pointing to different food
 webs supporting P. borealis in these two systems. Our study underscores
 the potential of molecular approaches to provide important new insights
 into the diet of marine invertebrates that are difficult or impossible to
 obtain with traditional methods, and calls for a revision of the role of
 gelatinous zooplankton in the diet of the key Arctic species P. borealis,
 and in extension, Arctic food webs.
description: This dataset contains all the information on the
 <em>Pandalus borealis</em> specimens analysed for the study on
 DNA-metabarcoding of <em>P.borealis</em> stomach
 content(Manuscript title: DNA-metabarcoding reveals the importance of
 gelatinous zooplankton in the diet of <em>Pandalus
 borealis</em>, a keystone species in the Arctic). The dataset
 "Pandalus_borealis_specimen_information" contains the metadata
 on the individuals studied, and
 "Pandalus_borealis_prey_metabarcoding_finaldataset" is the final
 output of the DNA-metabarcoding that was used to assess the diet
 of <em>P. borealis. </em> Sampling of
 specimen took place in Kvænangenfjord (Troms-Region) and around Svalbard
 (northern Barents Sea) on the Research Vessel Helmer Hanssen (UiT the
 Arctic University of Norway).
description: <b>Cruise</b> <b>Location</b> <b>Abbr.</b>   <b>Latitude</b> <b>Longitude</b> October 2018 Kvænangenfjord Kv   7004.773 2123.388 January 2019 Inner Isfjorden II   7819.260 1516.465 January 2019 Rekesøyla Re   7818.269 1228.712 January 2019 Kongsfjordrenna Kf   7859.138 0926.922 January 2019 Kongsgrunnen Kg   7934.169 0901.532 January 2019 Minkebanken Mb   7809.982 0956.255 January 2019 North No   7957.086 0902.478   The file "Pandalus_borealis_prey_metabarcoding_finaldataset.csv contain" contains blank entries (blank values changes to NA).
DOI: 10.15468/dl.d4btpn
title: Occurrence Download

description: A dataset containing 7400 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Astragalus lentiginosus",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 7400 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002380-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.bk3j9kd7t
title: Data from: Cre-mediated, loxP independent sequential recombination of a tripartite transcriptional stop cassette allows for partial read-through transcription

description: One of the widely used applications of the popular Cre-loxP method for
 targeted recombination is the permanent activation of marker genes, such
 as reporter genes or antibiotic resistance genes, by excision of a
 preceding transcriptional stop signal. The STOP cassette consists of three
 identical SV40-derived poly(A) signal repeats and is flanked by two loxP
 sites. We found that in addition to complete loxP-mediated recombination,
 limiting levels of the Cre recombinase also cause incomplete recombination
 of the STOP cassette. Partial recombination leads to the loss of only one
 or two of the three identical poly(A) repeats with recombination
 breakpoints always precisely matching the end/start of each poly(A) signal
 repeat without any relevant similarity to the canonical or known cryptic
 loxP sequences, suggesting that this type of Cre-mediated recombination is
 loxP-independent. Incomplete deletion of the STOP cassette results in
 partial read-through transcription, explaining at least some of the
 variability often observed in marker gene expression from an otherwise
 identical locus.
DOI: 10.5061/dryad.w0vt4b8n8
title: A dataset of plant and microbial community structure after long-term grazing and mowing in a semiarid steppe

description: Grazing and mowing are two dominant management regimes used in grasslands.
 Although many studies have focused on the effects of grazing intensity on
 plant community structure, far fewer test how grazing impacts the soil
 microbial community. Furthermore, the effects of long-term grazing and
 mowing on plant and microbial community structure are poorly understood.
 To elucidate how these management regimes affect plant and microbial
 communities, we collected data from 280 quadrats in a semiarid steppe
 after 12-year of grazing and mowing treatments. We measured plant species
 abundance, height, coverage, plant species diversity, microbial biomass,
 and microbial community composition (G+ and G− bacteria; arbuscular
 mycorrhizal and saprotrophic fungi; G+/G− and Fungi/Bacteria). In
 addition, we determined the soil’s physical and chemical properties,
 including soil hardness, moisture, pH, organic carbon, total nitrogen, and
 total phosphorus. This is a long-term and multifactorial dataset with
 plant, soil, and microbial attributes which can be used to answer
 questions regarding the mechanisms of sustainable grassland management in
 terms of plant and microbial community structure.
DOI: 10.21227/051m-kx52
title: "Pleurotus Mushroom Dataset"

description: "This dataset comprises two independent datasets related to Pleurotus mushrooms, designed to monitor their growth and determine when they are ready for harvest. The data were collected from a greenhouse in Grevena, Greece, during July and August 2022.The first dataset, \u201cMushroom Harvest\u201d was annotated under the guidance of an expert agriculturist and categorizes mushroom growth into three distinct classes. This dataset is intended to identify mushrooms that are ready for harvest.The second dataset, \u201cMushroom Growth\u201d, consists of a series of photos taken from 33 different substrate grow bags for seven different days. This dataset is suitable for monitoring the growth rate of mushrooms and determining when they are ready for harvest. This research was cofunded by the European Regional Development Fund of the European Union and Greek national funds through the Operational Program Western Macedonia 2014\u20132020, under the call \u201cCollaborative and networking actions between research institutions, educational institutions and companies in priority areas of the strategic smart specialization plan of the region\u201d, project \u201cSmart Mushroom fARming with internet of Things\u2014SMART\u201d, project code: DMR-0016521."
DOI: 10.25909/28869953.v2
title: Initial gRNA testing in WT cells

description: NGS data files
DOI: 10.15468/dl.defza4
title: Occurrence Download

description: A dataset containing 4223 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Farancia abacura (Holbrook, 1836)"
 ]
}

 The dataset includes 4223 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001581-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10568461
title: Replication package test
DOI: 10.5281/zenodo.10568462
title: Replication package test
DOI: 10.5281/zenodo.10568565
title: Replication package test
DOI: 10.5281/zenodo.15282480
title: frantzia_venosa_spades_01.fasta.gz
DOI: 10.5281/zenodo.15282481
title: frantzia_venosa_spades_01.fasta.gz
DOI: 10.5281/zenodo.13921485
title: Optimizing Class Integration Testing with Criticality-Driven Test Order Generation

description: The generation of class integration test orders (CITOs) is a pivotal element in integration testing, which focuses on determining the optimal order for integrating classes while testing an object-oriented system. Due to a high number of dependencies and their possible error proneness, some classes are more critical than others in a program. Existing methods for handling these classes only assess risk in terms of their dependencies; they do not consider historical bug information as an additional indicator and mainly work on small programs. 

To overcome these limitations, this paper introduces Criticality-Driven CITO (CD-CITO) generation, an innovative approach to optimize CITOs by focusing on class criticality. CD-CITO assesses both the importance of a class in terms of its dependencies and the likelihood of defects, based on historical bug data, to determine a criticality score. Then, it reformulates the CITO generation problem as a reinforcement learning task and uses the Advantage Actor-Critic (A2C) algorithm to address it. We propose a novel reward calculation strategy to guide the learning agent, balancing stubbing costs with the criticality values of classes to optimize the test order. To extract fault proneness information and access the approach, the paper uses Defects4j, a data set that contains real bugs and patches of Java programs. The results obtained show that CD-CITO effectively identifies and prioritizes highly critical classes and also minimizes stubbing costs while generating CITOs, which makes it a valuable tool for integration testing.
DOI: 10.5281/zenodo.13921486
title: Optimizing Class Integration Testing with Criticality-Driven Test Order Generation

description: The generation of class integration test orders (CITOs) is a pivotal element in integration testing, which focuses on determining the optimal order for integrating classes while testing an object-oriented system. Due to a high number of dependencies and their possible error proneness, some classes are more critical than others in a program. Existing methods for handling these classes only assess risk in terms of their dependencies; they do not consider historical bug information as an additional indicator and mainly work on small programs. 

To overcome these limitations, this paper introduces Criticality-Driven CITO (CD-CITO) generation, an innovative approach to optimize CITOs by focusing on class criticality. CD-CITO assesses both the importance of a class in terms of its dependencies and the likelihood of defects, based on historical bug data, to determine a criticality score. Then, it reformulates the CITO generation problem as a reinforcement learning task and uses the Advantage Actor-Critic (A2C) algorithm to address it. We propose a novel reward calculation strategy to guide the learning agent, balancing stubbing costs with the criticality values of classes to optimize the test order. To extract fault proneness information and access the approach, the paper uses Defects4j, a data set that contains real bugs and patches of Java programs. The results obtained show that CD-CITO effectively identifies and prioritizes highly critical classes and also minimizes stubbing costs while generating CITOs, which makes it a valuable tool for integration testing.
DOI: 10.5281/zenodo.13927661
title: Optimizing Class Integration Testing with Criticality-Driven Test Order Generation

description: The generation of class integration test orders (CITOs) is a pivotal element in integration testing, which focuses on determining the optimal order for integrating classes while testing an object-oriented system. Due to a high number of dependencies and their possible error proneness, some classes are more critical than others in a program. Existing methods for handling these classes only assess risk in terms of their dependencies; they do not consider historical bug information as an additional indicator and mainly work on small programs. 

To overcome these limitations, this paper introduces Criticality-Driven CITO (CD-CITO) generation, an innovative approach to optimize CITOs by focusing on class criticality. CD-CITO assesses both the importance of a class in terms of its dependencies and the likelihood of defects, based on historical bug data, to determine a criticality score. Then, it reformulates the CITO generation problem as a reinforcement learning task and uses the Advantage Actor-Critic (A2C) algorithm to address it. We propose a novel reward calculation strategy to guide the learning agent, balancing stubbing costs with the criticality values of classes to optimize the test order. To extract fault proneness information and access the approach, the paper uses Defects4j, a data set that contains real bugs and patches of Java programs. The results obtained show that CD-CITO effectively identifies and prioritizes highly critical classes and also minimizes stubbing costs while generating CITOs, which makes it a valuable tool for integration testing.
DOI: 10.5281/zenodo.15275779
title: Raw electrochemical data and analysis scripts for "Elucidating Linear vs. Bridging CO Adsorption on Polycrystalline Pt Using an H-UPD-Based Electrochemical Approach"

description: “This deposit contains:  raw linear-sweep voltammograms (.csv) recorded at five CO-adsorption potentials (50–400 mV vs RHE), processed coverage tables and .opj with column definitions and experimental details. Data underpin all figures and tables reported in the above-titled manuscript submitted to Journal of Electroanalytical Chemistry on May 2025.”
DOI: 10.5281/zenodo.15275780
title: Raw electrochemical data and analysis scripts for "Elucidating Linear vs. Bridging CO Adsorption on Polycrystalline Pt Using an H-UPD-Based Electrochemical Approach"

description: “This deposit contains:  raw linear-sweep voltammograms (.csv) recorded at five CO-adsorption potentials (50–400 mV vs RHE), processed coverage tables and .opj with column definitions and experimental details. Data underpin all figures and tables reported in the above-titled manuscript submitted to Journal of Electroanalytical Chemistry on May 2025.”
DOI: 10.6084/m9.figshare.29945303
title: 补充文件 1：纹状白芨和黄连根茎治疗 IBD 的网络药理学和分子动力学研究的原始和加工数据

description: 该数据集包含来自相关手稿中描述的分子动力学 （MD） 模拟和网络药理学分析的所有原始和处理数据。它包括：（1）分子对接的初始复杂结构;（2）两个独立的MD模拟重复（轨迹、拓扑等）的完整数据;（3）分析脚本;（4）汇总统计表。这种全面的存档确保了计算结果的完全可重复性。
DOI: 10.6084/m9.figshare.29945303.v1
title: 补充文件 1：纹状白芨和黄连根茎治疗 IBD 的网络药理学和分子动力学研究的原始和加工数据

description: 该数据集包含来自相关手稿中描述的分子动力学 （MD） 模拟和网络药理学分析的所有原始和处理数据。它包括：（1）分子对接的初始复杂结构;（2）两个独立的MD模拟重复（轨迹、拓扑等）的完整数据;（3）分析脚本;（4）汇总统计表。这种全面的存档确保了计算结果的完全可重复性。
DOI: 10.5281/zenodo.16908412
title: COVID-19-Hospitalisierungen in Deutschland

description: Im Datensatz 'COVID-19-Hospitalisierungen' werden die aktuellen Zahlen der nach den Vorgaben des Infektionsschutzgesetzes - IfSG - erfassten hospitalisierten COVID-19-Fälle bereitgestellt.
Um den Trend der Anzahl von Hospitalisierungen und der 7-Tage-Hospitalisierungsinzidenz besser bewerten zu können, wird die berichtete Hospitalisierungsinzidenz um eine Schätzung der zu erwartenden Anzahl an verzögert berichteten Hospitalisierungen ergänzt. Neben den Daten der gemeldeten COVID-19-Hospitalisierungen auf Bundes- und Länderebene wird daher ein Nowcasting der Anzahl hospitalisierter Fälle und der 7-Tage-Hospitalisierungsinzidenz auf Bundesebene durchgeführt. Ziel ist die Schätzung der Anzahl von hospitalisierten COVID-19-Fällen mit Meldedatum innerhalb der sieben vorhergehenden Tage - inklusive der noch nicht an das RKI berichteten Hospitalisierungen. Aufbauend auf dem Nowcasting wird eine Schätzung der adjustierten 7-Tage-Hospitalisierungsinzidenz durchgeführt.
DOI: 10.5281/zenodo.16951106
title: 2011 - London RAW - KSS

description: King's College London/ University of Reading Grimmond Urban Micromet Group



City: London

Year: 2011

Site:KSS

Data Levels:RAW

Key Person: Simone Kotthaus, Alex Bjorkegren

Funding: NERC ClearfLo, H2020 UrbanFluxes


/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-AMDAR.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-CProfile.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-CR5000.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-CSAT_Hrly.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-Davis2.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-EPP.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-GasProfile.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-LI840-1.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-LI840-2.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-MIRICLE.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-Radiation.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-SPN1.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-Tprofile.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-TProfile.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-Trailing.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-Valve_data.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-WEBCAM.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-WXT510.zip
DOI: 10.5281/zenodo.16951107
title: 2011 - London RAW - KSS

description: King's College London/ University of Reading Grimmond Urban Micromet Group



City: London

Year: 2011

Site:KSS

Data Levels:RAW

Key Person: Simone Kotthaus, Alex Bjorkegren

Funding: NERC ClearfLo, H2020 UrbanFluxes


/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-AMDAR.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-CProfile.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-CR5000.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-CSAT_Hrly.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-Davis2.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-EPP.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-GasProfile.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-LI840-1.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-LI840-2.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-MIRICLE.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-Radiation.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-SPN1.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-Tprofile.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-TProfile.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-Trailing.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-Valve_data.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-WEBCAM.zip/storage/research/micromet/Tier_raw/RAW/2011/London/KSS/2011-London-KSS-WXT510.zip
DOI: 10.6084/m9.figshare.31136635
title: Nonadiabatic and Anharmonic Effects in High-Pressure H<sub>3</sub>S and D<sub>3</sub>S Superconductors

description: This dataset contains first-principles results for the superconducting hydrides H<sub>3</sub>S and D<sub>3</sub>S at pressures of 160 and 200 GPa. It includes density-functional theory (DFT) electronic band structures; harmonic and anharmonic phonon calculation input and output files; and EPW input and output files for electron-phonon coupling calculations performed both with and without electron-phonon vertex corrections. Isotropic superconducting gap data obtained from Migdal-Eliashberg calculations are also provided. The dataset is intended to support reproducibility of the reported results and to enable further investigations of anharmonicity, isotope effects, and vertex-correction effects in high-pressure hydride superconductors.
DOI: 10.6084/m9.figshare.31136635.v1
title: Nonadiabatic and Anharmonic Effects in High-Pressure H<sub>3</sub>S and D<sub>3</sub>S Superconductors

description: This dataset contains first-principles results for the superconducting hydrides H<sub>3</sub>S and D<sub>3</sub>S at pressures of 160 and 200 GPa. It includes density-functional theory (DFT) electronic band structures; harmonic and anharmonic phonon calculation input and output files; and EPW input and output files for electron-phonon coupling calculations performed both with and without electron-phonon vertex corrections. Isotropic superconducting gap data obtained from Migdal-Eliashberg calculations are also provided. The dataset is intended to support reproducibility of the reported results and to enable further investigations of anharmonicity, isotope effects, and vertex-correction effects in high-pressure hydride superconductors.