cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4121/1f95769f-e87e-4f38-8f15-b8865fc9e26d.v1
title: Data underlying the publication: Tissue-mimicking phantom materials with tunable optical properties suitable for assessment of diffuse reflectance spectroscopy during electrosurgery

description: Emerging intraoperative tumor margin assessment techniques require the development of more complex and reliable organ phantoms to assess the performance of the technique before its translation into the clinic. In this work, electrically conductive tissue-mimicking materials (TMMs) based on fat, water and agar/gelatin were produced with tunable optical properties. The composition of the phantoms allowed for the assessment of tumor margins using diffuse reflectance spectroscopy, as the fat/water ratio served as a discriminating factor between the healthy and malignant tissue. Moreover, the possibility of using polyvinyl alcohol (PVA) or transglutaminase in combination with fat, water and gelatin for developing TMMs was studied. The diffuse spectral response of the developed phantom materials had a good match with the spectral response of porcine muscle and adipose tissue, as well as <em style="color:rgb(34, 34, 34);">in vitro</em> human breast tissue. Using the developed recipe, anatomically relevant heterogeneous breast phantoms representing the optical properties of different layers of the human breast were fabricated using 3D-printed molds. These TMMs can be used for further development of phantoms applicable for simulating the realistic breast conserving surgery workflow in order to evaluate the intraoperative optical-based tumor margin assessment techniques during electrosurgery.
DOI: 10.15468/dl.jjxcyg
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (South America, Antarctica)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Avenella flexuosa (L.) Drejer"
 ]
}

 The dataset includes 97 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028652-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ktpjwn
title: Occurrence Download

description: A dataset containing 1883 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sebdeniales"
 ]
}

 The dataset includes 1883 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028654-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8mhkk5
title: Occurrence Download

description: A dataset containing 505 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fototrampeo al interior de las áreas del Banco de Hábitat Bosque de Niebla - El Globo de Terrasos"
 ]
}

 The dataset includes 505 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028655-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/d6d6f103-b192-4b04-bd6c-58ad9f0c4740
title: Data underlying the publication: Enhancing Intraoperative Tissue Identification: Investigating a Smart Electrosurgical Knife's Functionality During Electrosurgery

description: Detecting the cancerous growth margin and achieving a negative margin is one of the challenges that surgeons face during cancer procedures. A smart electrosurgical knife with integrated optical fibers has been designed previously to enable real-time use of diffuse reflectance spectroscopy for intraoperative margin assessment. In this paper, the thermal effect of the electrosurgical knife on tissue sensing is investigated. Methods: Porcine tissues and phantoms were used to investigate the performance of the smart electrosurgical knife after electrosurgery. The fat-to-water content ratio (F/W-ratio) served as the discriminative parameter for distinguishing tissues and tissue mimicking phantoms with varying fat content. The F/W-ratio of tissues and phantoms was measured with the smart electrosurgical knife before and after 14 minutes of electrosurgery. Additionally, a layered porcine tissue and phantom were sliced and measured from top to bottom with the smart electrosurgical knife. Results: Mapping the thermal activity of the electrosurgical knife’s electrode during animal tissue electrosurgery revealed temperatures exceeding 400 °C. Electrosurgery for 14 minutes had no impact on the device’s accurate detection of the F/W-ratio. The smart electrosurgical knife enables real-time tissue detection and predicts the fat content of the next layer from 4 mm ahead. Conclusion: The design of the smart electrosurgical knife outlined in this paper demonstrates its potential utility for tissue detection during electrosurgery. Significance: In the future, the smart electrosurgical knife could be a valuable intraoperative margin assessment tool, aiding surgeons in detecting tumor borders and achieving negative margins.
DOI: 10.4121/d6d6f103-b192-4b04-bd6c-58ad9f0c4740.v1
title: Data underlying the publication: Enhancing Intraoperative Tissue Identification: Investigating a Smart Electrosurgical Knife's Functionality During Electrosurgery

description: Detecting the cancerous growth margin and achieving a negative margin is one of the challenges that surgeons face during cancer procedures. A smart electrosurgical knife with integrated optical fibers has been designed previously to enable real-time use of diffuse reflectance spectroscopy for intraoperative margin assessment. In this paper, the thermal effect of the electrosurgical knife on tissue sensing is investigated. Methods: Porcine tissues and phantoms were used to investigate the performance of the smart electrosurgical knife after electrosurgery. The fat-to-water content ratio (F/W-ratio) served as the discriminative parameter for distinguishing tissues and tissue mimicking phantoms with varying fat content. The F/W-ratio of tissues and phantoms was measured with the smart electrosurgical knife before and after 14 minutes of electrosurgery. Additionally, a layered porcine tissue and phantom were sliced and measured from top to bottom with the smart electrosurgical knife. Results: Mapping the thermal activity of the electrosurgical knife’s electrode during animal tissue electrosurgery revealed temperatures exceeding 400 °C. Electrosurgery for 14 minutes had no impact on the device’s accurate detection of the F/W-ratio. The smart electrosurgical knife enables real-time tissue detection and predicts the fat content of the next layer from 4 mm ahead. Conclusion: The design of the smart electrosurgical knife outlined in this paper demonstrates its potential utility for tissue detection during electrosurgery. Significance: In the future, the smart electrosurgical knife could be a valuable intraoperative margin assessment tool, aiding surgeons in detecting tumor borders and achieving negative margins.
DOI: 10.48597/9pru-3nms
title: Measurement of Mercury at Westerland

description: Measurement of Mercury at Westerland
DOI: 10.48597/dw9z-krb4
title: Measurement of Nitrogen oxides at Westerland

description: Measurement of Nitrogen oxides at Westerland
DOI: 10.48597/2nm3-c2vq
title: Measurement of Nitrogen oxides at Westerland

description: Measurement of Nitrogen oxides at Westerland
DOI: 10.48597/4apx-wxha
title: Measurement of Nitrogen oxides at Westerland

description: Measurement of Nitrogen oxides at Westerland
DOI: 10.48597/4bjg-ns2p
title: Measurement of Nitrogen oxides at Westerland

description: Measurement of Nitrogen oxides at Westerland
DOI: 10.48597/agd6-2ccp
title: Measurement of Nitrogen oxides at Westerland

description: Measurement of Nitrogen oxides at Westerland
DOI: 10.48597/gvu5-xtw7
title: Measurement of Nitrogen oxides at Westerland

description: Measurement of Nitrogen oxides at Westerland
DOI: 10.48597/kapy-n5nb
title: Measurement of Nitrogen oxides at Westerland

description: Measurement of Nitrogen oxides at Westerland
DOI: 10.48597/rfcp-kv3c
title: Measurement of Nitrogen oxides at Westerland

description: Measurement of Nitrogen oxides at Westerland
DOI: 10.48597/8xt3-k5k7
title: Measurement of Mercury at Westerland

description: Measurement of Mercury at Westerland
DOI: 10.48597/fzkm-ktr8
title: Measurement of Nitrogen oxides at Westerland

description: Measurement of Nitrogen oxides at Westerland
DOI: 10.48597/jgdn-rnrc
title: Measurement of Mercury at Westerland

description: Measurement of Mercury at Westerland
DOI: 10.48597/mr9v-88ah
title: Measurement of Mercury at Westerland

description: Measurement of Mercury at Westerland
DOI: 10.48597/ncgt-j5dj
title: Measurement of Mercury at Westerland

description: Measurement of Mercury at Westerland
DOI: 10.48597/pq5g-qfnq
title: Measurement of Mercury at Westerland

description: Measurement of Mercury at Westerland
DOI: 10.48597/rft8-v5wc
title: Measurement of Mercury at Westerland

description: Measurement of Mercury at Westerland
DOI: 10.48597/us2e-kyyh
title: Measurement of Mercury at Westerland

description: Measurement of Mercury at Westerland
DOI: 10.48597/4jmc-6buz
title: Measurement of Mercury at Westerland

description: Measurement of Mercury at Westerland
DOI: 10.48597/u5sm-e4af
title: Measurement of Mercury at Westerland

description: Measurement of Mercury at Westerland
DOI: 10.48597/qebs-7nu7
title: Measurement of Mercury at Westerland

description: Measurement of Mercury at Westerland
DOI: 10.48597/xygq-7gmb
title: Measurement of Nitrogen oxides at Westerland

description: Measurement of Nitrogen oxides at Westerland
DOI: 10.25345/c5ft8dx1d
title: MassIVE MSV000096628 - Refined c-di-GMP Capture Compound Highlights Novel Effectors in Streptomyces Metabolism
title: Streptomyces are still the main source for bioactive natural products. Especially in times of rising resistances to antibiotics there is an urgent need for the development of novel antibiotics. Streptomyces can be a part of the solution for this concerning problem, but they face the major problem, that the majority of the gene clusters encoding for the biosynthesis of natural products remains cryptic under laboratory conditions. C-di-GMP was found to be a crucial part of the regulation process of biosynthetic gene clusters, so manipulations of the natural c-di-GMP levels led to the activation of them. Here we report GlnR as a novel c-di-GMP binding proteins, that is involved in the carrying out these effects. Additionally, we found a new oxidoreductase as a c-di-GMP binding protein, whose role is yet to be elucidated.
DOI: 10.5281/zenodo.14244199
title: Interglacial permafrost dynamics: CryoGridLite.jl climate forcing data based on AWI-ESM-2 climate model output

description: This record contains climate forcing time series used to run simulations with the CryoGridLite.jl permafrost model depositet at 10.5281/zenodo.14243849. The simulations are the basis for a research article perpared for publication in the journal Climate of the past.

The climate forcings are based on output of AWI-ESM-2 experiments which were run under different boundary conditions for the pre-industrial (PI), mid-Holocene (MH) and last interglacial (LIG). Each forcing timeseries contains 100 years of daily surface temperatures and snowfall rates.

In addition, a script create_forcing_shiftedMean_zenodo.py is provided which was used to create alternative climate forcings with shifted annual mean surface temperatures. 

Key model diagnostics, and plotting and analysis scripts of the simulations used for the research article  are deposited at 10.5281/zenodo.14243857.
DOI: 10.5281/zenodo.14244198
title: Interglacial permafrost dynamics: CryoGridLite.jl climate forcing data based on AWI-ESM-2 climate model output

description: This record contains climate forcing time series used to run simulations with the CryoGridLite.jl permafrost model depositet at 10.5281/zenodo.14243849. The simulations are the basis for a research article perpared for publication in the journal Climate of the past.

The climate forcings are based on output of AWI-ESM-2 experiments which were run under different boundary conditions for the pre-industrial (PI), mid-Holocene (MH) and last interglacial (LIG). Each forcing timeseries contains 100 years of daily surface temperatures and snowfall rates.

In addition, a script create_forcing_shiftedMean_zenodo.py is provided which was used to create alternative climate forcings with shifted annual mean surface temperatures. 

Key model diagnostics, and plotting and analysis scripts of the simulations used for the research article  are deposited at 10.5281/zenodo.14243857.
DOI: 10.15468/dl.6wpeb2
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fototrampeo al interior del Banco de Hábitat piedemonte llanero del Casanare \"Mesa de San Pedro\""
 ]
}

 The dataset includes 25 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028656-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12568498
title: Dataset for: Long-term assessment of beef cattle performance and hair cortisol accumulation in a silvopastoral system
DOI: 10.5281/zenodo.12568499
title: Dataset for: Long-term assessment of beef cattle performance and hair cortisol accumulation in a silvopastoral system
DOI: 10.5281/zenodo.11181082
title: Data and code for Declining precipitation frequency drivers earlier leaf senescence by intensifying drought stress and enhancing drought acclimation

description: DFS.rar contains the DFS derived from GIMMS3g NDVI.

Trendy.rar contains the simulated DFS based on output GPP from 16 Trendy models during 1983–2021.

CMIP6.rar contains the simulated DFS based on output GPP from 14 CMIP6 models under different shared socioeconomic pathways (SSP-126, SSP-245, SSP-370, and SSP-585) during 2016–2100.

code.zip contains the code for data analysis.

source data.zip contains the source data for Figure 1-3 and supplementary Figure 1-10.
DOI: 10.5281/zenodo.11181083
title: Data for Declining precipitation frequency drivers earlier leaf senescence by intensifying drought stress and enhancing drought acclimation

description: This dataset contains the date of leaf senescence (DFS) data derived from GIMMS3g, Trendy, and CMIP6.

DFS.rar contains the DFS derived from GIMMS3g NDVI.

Trendy.rar contains the simulated DFS based on output GPP from 16 Trendy models during 1983–2021.

CMIP6.rar contains the simulated DFS based on output GPP from 14 CMIP6 models under different shared socioeconomic pathways (SSP-126, SSP-245, SSP-370, and SSP-585) during 2016–2100.
DOI: 10.5281/zenodo.11188868
title: Data and code for Declining precipitation frequency drivers earlier leaf senescence by intensifying drought stress and enhancing drought acclimation

description: DFS.rar contains the DFS derived from GIMMS3g NDVI.

Trendy.rar contains the simulated DFS based on output GPP from 16 Trendy models during 1983–2021.

CMIP6.rar contains the simulated DFS based on output GPP from 14 CMIP6 models under different shared socioeconomic pathways (SSP-126, SSP-245, SSP-370, and SSP-585) during 2016–2100.

code.rar contains the code for partial correlation analysis and structural equation model.

demo.zip contains the sample data, expected output, and code.
DOI: 10.5281/zenodo.14359346
title: Data and code for Declining precipitation frequency drivers earlier leaf senescence by intensifying drought stress and enhancing drought acclimation

description: DFS.rar contains the DFS derived from GIMMS3g NDVI.

Trendy.rar contains the simulated DFS based on output GPP from 16 Trendy models during 1983–2021.

CMIP6.rar contains the simulated DFS based on output GPP from 14 CMIP6 models under different shared socioeconomic pathways (SSP-126, SSP-245, SSP-370, and SSP-585) during 2016–2100.

code.zip contains the code for data analysis.

source data.zip contains the source data for Figure 1-3 and supplementary Figure 1-10.
DOI: 10.4121/d208f925-2c60-4f79-811c-47ef7002873b
title: Data related to the crossed test for the polarimetric characterization of prism 3 of the modulator

description: This data refers to the polarimetric characterization, at a wavelength of 515 nm, of the first prism of the modulator used in the frame of the PhD thesis "Development of a high-performing spectropolarimeter for space usage". The data set contains images corresponding to the "fit procedure" for retrieving the phase variation and the fast axis orientation inside this wedge. Two types of measurements are presented here: for the specimen situated between aligned linear polarizers and between crossed polarized. For both situations, the two linear polarizers were rotated between 0º and 360º with a step of 1º, and five images were recorded for each orientation. In addition, dark images are provided to assess the noise. Each set of images contains metadata with the precise setup of the camera during the acquisition. The wedge under study was rotated here with 90º around the optical axis to ensure the fixation. The horizontal of the images corresponds then to the vertical of the wedge, and the apex angle is situated at the right.
DOI: 10.4121/d208f925-2c60-4f79-811c-47ef7002873b.v1
title: Data related to the crossed test for the polarimetric characterization of prism 3 of the modulator

description: This data refers to the polarimetric characterization, at a wavelength of 515 nm, of the first prism of the modulator used in the frame of the PhD thesis "Development of a high-performing spectropolarimeter for space usage". The data set contains images corresponding to the "fit procedure" for retrieving the phase variation and the fast axis orientation inside this wedge. Two types of measurements are presented here: for the specimen situated between aligned linear polarizers and between crossed polarized. For both situations, the two linear polarizers were rotated between 0º and 360º with a step of 1º, and five images were recorded for each orientation. In addition, dark images are provided to assess the noise. Each set of images contains metadata with the precise setup of the camera during the acquisition. The wedge under study was rotated here with 90º around the optical axis to ensure the fixation. The horizontal of the images corresponds then to the vertical of the wedge, and the apex angle is situated at the right.
DOI: 10.6084/m9.figshare.28000457
title: Water-air imaging: a hierarchical multi-resolution reconstruction algorithm

description: 我们提出了一种针对波浪形水面扭曲的高效图像恢复方案。该方案可用于水下目标检测、沿海目标监测和海洋生物研究。
DOI: 10.6084/m9.figshare.28000457.v1
title: Water-air imaging: a hierarchical multi-resolution reconstruction algorithm

description: 我们提出了一种针对波浪形水面扭曲的高效图像恢复方案。该方案可用于水下目标检测、沿海目标监测和海洋生物研究。
DOI: 10.5281/zenodo.11633732
title: Investigation of adhesion layers for the deposition of magnetostrictive CoxFe(1-x) films on ScyAl(1-y)N films for magnetoelectric MEMS sensors

description: For magnetoelectric film stacks, Co/Fe multilayers are deposited on piezoelectric (Sc)AlN films on Si/SiO2 substrates and subsequently annealed by rapid thermal annealing (RTA) to create a Co-Fe alloy phase. In this study, the influence of an optional adhesion layer of 5 nm Cr or Zr on the phase transformation and interlayer properties was investigated. The dataset provided contains logfiles from the RTA process, raw data of X-ray diffraction (XRD), enery dispersive X-ray spectroscopy (EDS) measurements and scanning electron microscope (SEM) images of focused ion beam (FIB) prepared cross-sections. 

 

Results published in:

H. Honig, H. Töpfer, P. Schaaf; Adhesion layers between piezoelectric and magnetostrictive layers in a MEMS magneto-sensor stack: Influence on the phase transformation of deposited Co/Fe multilayers to magnetostrictive CoxFe1−x phase. J. Vac. Sci. Technol. A 1 December 2024; 42 (6): 063405. https://doi.org/10.1116/6.0004071
description: Acknowledgement

This work is supported by the Free State of Thuringia and the European Social Fund within grant 2017 FGR 0060. Support by the Center of Micro- and Nanotechnologies (ZMN) (DFG Resources reference: RI_00009), a DFG funded core facility (Grant No. MU3171/2-1 + 6-1, SCHA 632/19-1 + 27-1, HO 2284/4-1 + 12-1) of the TU Ilmenau, is gratefully acknowledged.
DOI: 10.5281/zenodo.11633733
title: Investigation of adhesion layers for the deposition of magnetostrictive CoxFe(1-x) films on ScyAl(1-y)N films for magnetoelectric MEMS sensors

description: For magnetoelectric film stacks, Co/Fe multilayers are deposited on piezoelectric (Sc)AlN films on Si/SiO2 substrates and subsequently annealed by rapid thermal annealing (RTA) to create a Co-Fe alloy phase. In this study, the influence of an optional adhesion layer of 5 nm Cr or Zr on the phase transformation and interlayer properties was investigated. The dataset provided contains logfiles from the RTA process, raw data of X-ray diffraction (XRD), enery dispersive X-ray spectroscopy (EDS) measurements and scanning electron microscope (SEM) images of focused ion beam (FIB) prepared cross-sections. 

 

Results published in:

H. Honig, H. Töpfer, P. Schaaf; Adhesion layers between piezoelectric and magnetostrictive layers in a MEMS magneto-sensor stack: Influence on the phase transformation of deposited Co/Fe multilayers to magnetostrictive CoxFe1−x phase. J. Vac. Sci. Technol. A 1 December 2024; 42 (6): 063405. https://doi.org/10.1116/6.0004071
description: Acknowledgement

This work is supported by the Free State of Thuringia and the European Social Fund within grant 2017 FGR 0060. Support by the Center of Micro- and Nanotechnologies (ZMN) (DFG Resources reference: RI_00009), a DFG funded core facility (Grant No. MU3171/2-1 + 6-1, SCHA 632/19-1 + 27-1, HO 2284/4-1 + 12-1) of the TU Ilmenau, is gratefully acknowledged.
DOI: 10.15468/dl.wykp36
title: Occurrence Download

description: A dataset listing the 10838 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is DSMZ Prokarya Collection Catalogue"
 ]
}

 The dataset's 10838 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028650-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5nqr6q
title: Occurrence Download

description: A dataset containing 5792076 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Chile",
 "DatasetKey is EOD – eBird Observation Dataset"
 ]
}

 The dataset includes 5792076 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028646-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14360957
title: SYSTEMATIC REVIEW OF BPMN EXTENSIONS DATASET

description: This database contains all the data analysis carried out in the systematic review of BPMN extensions, which can be reproduced from the information documented in this spreadsheet. It also offers a more detailed visualization of the analysis, which is available in our article.
DOI: 10.5281/zenodo.14360958
title: SYSTEMATIC REVIEW OF BPMN EXTENSIONS DATASET

description: This database contains all the data analysis carried out in the systematic review of BPMN extensions, which can be reproduced from the information documented in this spreadsheet. It also offers a more detailed visualization of the analysis, which is available in our article.