cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.51bf1j3/1
title: Ross et al. Gosling Survival and Size Data

description: Excel file with 4 sheets: Gosling size data, gosling size metadata, gosling survival data and gosling survival metadata
DOI: 10.5061/dryad.56jt85j/1
title: Supporting information File 1

description: Supplementary file 1: Tables S1-S7 accompanying the publication "Contrasting patterns of divergence at the regulatory and sequence level in European Daphnia galeata natural populations", Suda Parimala Ravindran, Maike Herrmann and Mathilde Cordellier. For the Table of Contents please refer to the README file.
DOI: 10.5061/dryad.56jt85j/2
title: SNP Data Ravindran

description: VCF file containing SNPs identified for Daphnia galeata
DOI: 10.5061/dryad.5m1m755/1
title: Data from intraperitoneal glucose sensing in pigs
DOI: 10.5061/dryad.5m1m755/4
title: raw_data
DOI: 10.5061/dryad.69r593t/1
title: Long-term effects of folivory on Fragaria vesca fitness

description: Data on the effects of leaf damage by Galerucella tenella on survival, growth, chlorophyll content and sexual and clonal reproduction of woodland strawberry (Fragaria vesca) during the year of damage and year after damage.
DOI: 10.5061/dryad.7s11m96/1
title: alignments

description: contains all the alignments of data presented either in the main text or the supplementary material
DOI: 10.5061/dryad.7s11m96/2
title: trees

description: Input and output files for BEAST v.1.8.1
DOI: 10.5061/dryad.7s11m96/6
title: Thermal_Death_Time_Curves_pipeline_REV2

description: Contains an excel file with the pipeline needed to create the Thermal Death Time curves and extrapolate the CTmax values. The pipeline is separated in 7 steps. Step1 contains the observed data (time in minutes and percentage (%) of incapacitated individuals). Step 2 contains the log10 transformed data of step 1. Step 3 represents the fitting of linear regressions to the data of step 2. Step 4 contains the estimation of time needed for LT50 from the regressions presented in step 3. In Step 5 we plotted the time needed for LT50 (in logarithmic scale) against the experimental temperature to create the TDT curves for each clone separately. In step 6 we estimated the CTmax and the z value from the intercept and slope of the TDT curves. In step 7 we used the estimated values in step 6 to create the thermal tolerance landscape.
DOI: 10.5061/dryad.7s11m96/7
title: Generalized Linear Mixed Models

description: Contains the data input in R software we used to run GLMM models to test the effect of temperature and species on the response variable, i.e., the time when 50% of the experimental population was incapacitated (LT50). Lineage c represents the species Brachionus calyciflorus s.s. and lineage d represents the species Brachionus fernandoi. Also contains the code for running GLMM in R using lmer4 and car packages and a file with the console output.
DOI: 10.5061/dryad.7s11m96/8
title: t-test for CTmax values

description: Contains the CTmax input data used to test for normal distribution and t-test. Also contains the R script used for both Shapiro-Wilk and t-test as well as the output of the previous analyses on the console. CTmax represents Critical Themal Maximun values estimated as an extrapolation from the Thermat Death Time (TDT) curves. Lineage c represents species Brachinous calyciforus s.s. and lineage d represents the species Brachionus fernandoi.
DOI: 10.5061/dryad.9ps1n99/2
title: Bjerke_et_al_Nord_J_Bot_2018_Fig2b

description: Characteristics of shoots with wintergreen leaves measured ca. 5 days after snowmelt in early May 2015: Contents of chlorophyll (Chl), nitrogen (Nitrogen Balance Index, NBI) and flavonoids (Flav; relative absorbance values)
DOI: 10.5061/dryad.9ps1n99/3
title: Bjerke_et_al_Nord_J_Bot_2018_Fig_3_overwintering_leaves

description: Temporal changes in contents of chlorophyll concentration (Chl), nitrogen (NBI) and flavonoids (Flav) in wintergreen of Vaccinium myrtillus from snowmelt in early May 2016 to early autumn in late August 2016.
DOI: 10.5061/dryad.9ps1n99/4
title: Bjerke_et_al_Nord_J_Bot_2018_Fig_3_ new_leaves

description: Temporal changes in contents of chlorophyll concentration (Chl), nitrogen (NBI) and flavonoids (Flav) in new leaves of Vaccinium myrtillus from May 2016 to early autumn in late August 2016.
DOI: 10.5061/dryad.9ps1n99/5
title: Bjerke_et_al_Nord_J_Bot_2018_Fig_5_leaf colour

description: Temporal changes in frequency of leaf colour state during the 2016 growing season. nm = not measured.
DOI: 10.5061/dryad.9ps1n99/6
title: Bjerke_et_al_Nord_J_Bot_2018_Fig_6

description: Number of remaining wintergreen leaves per shoot, and number of new side branches per shoot from snowmelt in early May to early autumn in late August 2016. DOY = day of year.
DOI: 10.5061/dryad.b387qp0/1
title: Monthly home range extent (kud95%) of P. leopardus

description: This file contains data for Figure 1. It has core (kud50%) and extent (kud95%) of home range each month for each individual at each location. Along with monthly temperature profiles for each location
DOI: 10.5061/dryad.b387qp0/2
title: Cumulative activity space for kud50% and kud95% for P.leopardus from Opal Reef and Heron Island

description: This file contains data that produced Figure 2 of the manuscript. It has weekly cumulative activity space metrics for 50%kud (callled 50%.cum) and 95%kud (called 50%.cum) in  the spreadsheet for each individual from each locations with corresponding weekly temperature values and fork length.
DOI: 10.5061/dryad.dv03078/1
title: Genome annotation for A. gallica (JGI Armillaria gallica 21-2 v1)

description: Provisional genome annotation was done with GeneMarkES under the default settings and SNPs were annotated with snpEff.
DOI: 10.5061/dryad.g6k20t0/1
title: Appel et al 2018_supplemental material

description: Supplemental material for publication 'A potential role for GSK3beta in glucose-driven intrauterine catch-up growth in maternal obesity'.
DOI: 10.5061/dryad.g8r231p/1
title: Data_Oik_05627

description: This sheet holds all plant data and factors used in the models that were described in the associated paper. The column headings were edited to match the variables and factor levels named in the paper. If additional information is needed please contact me (christian.lampei(at)uni-münster.de or c.lampei(at)yahoo.de.
DOI: 10.5061/dryad.gd23252/1
title: Multievent capture-recapture encounter history matrix

description: Encounter history matrix used to model breeding probability of southern elephant seals with a multievent-robust design capture-recapture model.
DOI: 10.5061/dryad.hm054m5/1
title: MarquezBTXEvolution2018

description: Alignments, trees, and other input files used.
DOI: 10.5061/dryad.kf0h22h/1
title: grunion_OA_expt

description: Measurements of mortality rates and average sizes of larvae under two treatments: ambient pCO2 and pH, and low pH/high pCO2
DOI: 10.5061/dryad.kg52rj5/1
title: DropNotes_updated

description: Spreadsheet scoring results of free falls in intact and haltere-ablated flies.
DOI: 10.5061/dryad.mv59665/1
title: Japanese_inland_fiseries_data_Matsuzaki_JAE2018
DOI: 10.5061/dryad.n5g39d7/1
title: Light microscopy images of Hemimastix and Spironema

description: Raw light microscopy images of Hemimastix kukwesjijk and Spironema cf. multiciliatum, as used in paper.
DOI: 10.5061/dryad.n5g39d7/2
title: SEM images Hemimastix kukwesjijk

description: Raw Scanning Electron Microscopy images of Hemimastix kukwesjijk, as used in figures in paper.
DOI: 10.5061/dryad.n5g39d7/3
title: SSU alignment and tree of Hemimastigophora

description: Eukaryote-wide small subunit rDNA (SSU) dataset, including Hemimastigophora kukwesjijk and Spironema cf. multiciliatum. Includes alignment in fasta-format and final RAxML-derived tree in NEWICK-format.
DOI: 10.5061/dryad.n5g39d7/4
title: Transcriptome assemblies of Hemimastigophora

description: Assemblies of Hemimastix kukwesjijk and Spironema cf. multiciliatum transcriptomes, assembled with Trinity, and cleaned of cross-contamination using a custom script. Nucleotide-data, in fasta-format.
DOI: 10.5061/dryad.n5g39d7/5
title: Single gene alignments for phylogenomic dataset

description: 351 single-gene alignments used in phylogenomic analyses, aligned with MAFFT L-INS-I, untrimmed. This dataset includes 104 eukaryote taxa. In fasta-format.
DOI: 10.5061/dryad.n88k968/1
title: Parejocase_DETERMINANTS_OF_COLOR_POLYMORPHISM_IN_THE_EURASIAN_SCOPS_OWL_OTUS_SCOPS.xls

description: Data set for Parejo et al. 2018
DOI: 10.5061/dryad.p6g8048/2
title: Scanned raw images

description: Scanned raw images, 400dpi
DOI: 10.5061/dryad.p6g8048/3
title: ImageJ analysis files

description: Open these files with ImageJ
DOI: 10.5061/dryad.q4d2v6h/1
title: Argy-HHS-demuliplexed-GBS-data

description: Argy-HHS-demuliplexed-GBS-data.tar.gz contains demultiplexed reads for the samples used in this study, that were created following step one of the ipyrad assembly pipeline.
DOI: 10.5061/dryad.qm44087/4
title: Nanozoom_images_3
DOI: 10.5061/dryad.qm44087/5
title: Nanozoom_images_4
DOI: 10.5061/dryad.rh094v7/1
title: origin data
DOI: 10.5061/dryad.rj10fh0/1
title: Hawaiian silversword dataset

description: The zip file contains all input data for the silversword analysis: the ITS molecular alignment, taxon range data for the six discrete areas, the paleogeographic connectivity matrices, the times of island formation, and the area-distance matrix.
DOI: 10.5061/dryad.rj10fh0/2
title: Hawaiian silversword output

description: This archive contains output used in the "Retracing the Hawaiian silversword radiation". Model settings correspond to the preferred diversification and taxon sampling settings, and for the three model types: full paleogeography (G4), hotspot-naive (G1), and geography-naive (G0). See main text for details.
DOI: 10.5061/dryad.rj10fh0/3
title: Hawaiian silversword radiation histories

description: This archive contains figures of evolutionary histories for the silversword radiation. Each figure shows the dated tree, its topology, range evolution histories, and paleogeographic island ages. Only 100 of 1000 histories shown. Model settings correspond to the preferred diversification and taxon sampling settings, and for the three model types: full paleogeography (G4), hotspot-naive (G1), and geography-naive (G0). See main text for details.
DOI: 10.5061/dryad.s3mr73b/1
title: PhenotypeData_33DGRP

description: Male reproductive phenotype data for 33 of the DGRP lines. Phenotypes include male latency to copulation and male insemination capacity.
DOI: 10.5061/dryad.t78c588/1
title: dataDryad_Halfwerk-etal 2018 NEE

description: raw data on call behaviour, environmental sampling, female choice experiments and translocation experiment
DOI: 10.5061/dryad.v8g21pt/1
title: ADAPTmap_genotypeTOP_20160222_full

description: Genotyping data in plink binary format (bed/bim/fam) for 4,653 goats and 53,347 genotypes.
DOI: 10.5061/dryad.vv34k10/1
title: interview data
DOI: 10.17632/6tt7zj36wm.1
title: Data for: Development of Graphene Capped Silicon-Silicon oxide Core-Shell Nano-structure: Charge trapping characteristics at the Interfaces

description: This file contains supplementary data on X-RD, Raman data for different composites of graphene and Silicon nanocrystal. It contains I-V characteristics in dark for devices made with the composites.
DOI: 10.17632/fhv9dhzgb2.1
title: Data for: A novel mixture model using multivariate normal mean-variance mixture of Birnbaum-Saunders distribution and its application to extrasolar planets

description: The data are from the Extrasolar Planets Encyclopaedia (http://exoplanet.eu/). We use the data of April 2017 and exclude the incomplete ones. There are 965 planets available in this study.
DOI: 10.17632/fmf82y3spg.1
title: Data for: Tectonic and depositional setting of the lower Cambrian and lower Silurian marine shales in the Yangtze Platform: Implications for Shale Gas Exploration and Production

description: Geochemistry, facies, thickness
DOI: 10.17632/phrhd2c64r.1
title: Planting position and shade enhance native seedling performance in forest restoration for an endangered Malagasy plant

description: Details of statistical analyses used in research
DOI: 10.17632/rksh4mgkkm.1
title: Data for: Synthesis of different morphologies CuO nanocrystalline under room temperature

description: This folder contains all the raw data for this paper
DOI: 10.17632/v5w2xcnpfb.1
title: Data for: Investments in and returns on network embeddedness: An experiment with trust games

description: Experimental data & analysis file (Stata)
DOI: 10.17632/w487tnnfms.1
title: Data for: The effect of calcium sulfate crystallization and the crystal modification on aqueous REE stability in Ca saturated REE-Ca-SO4-H2O systems

description: Thermodynamics data
DOI: 10.5061/dryad.0nb2307/5
title: ORJU06x12_biall_dp450_q40_maf002_nomissing_hwe00001_sel01_BAYESCENV

description: Subset of 49 SNP outliers identified with BayScEnv for the second redundancy analysis in the manuscript.
DOI: 10.5061/dryad.0nb2307/6
title: ORJUGEO_coords_ALLSAMPLES

description: Table of sample location and geographic coordinates for all sequenced samples of the study.
DOI: 10.5061/dryad.0nb2307/7
title: ORJUGEO_coords_ClimVariables

description: Sample data and WorldClim environmental data (Fick, S.E. and R.J. Hijmans, 2017. Worldclim 2: New 1-km spatial resolution climate surfaces for global land areas. International Journal of Climatology.) for each one of the samples included in the genotype-environment association analyses.
DOI: 10.5061/dryad.121hs31/1
title: All data from study in achieved folder.

description: Data from each subject (rat) saved as individual nifti file.      
part 1: multi_direction_diffusion_weighted (MDDW, n=10); part 2: diffusion tensor imaging (DTI, n=6); part 3: ECG gated (n=5); part 4: dobutamine (n=6). For the ECG data (part 3) the imaging data is saved as a 4D array with the 4th dimension equal to 2. The first element corresponds to the 36ms delay to the r wave (i.e arterial pulsation) and the second element corresponds to the 116ms delay (i.e diastole). For the dobutamine data (part 4), the data is also saved as a 4D array with the same dimensions. The first element of the 4th dimension corresponds to the baseline measurement and the second element corresponds to the measurement after dobutamine (rats 1-3) or saline vechicle (rats 4-6).
DOI: 10.5061/dryad.25v031b/1
title: controlled grazing experiment data

description: Soil aggregate stability data for the controlled grazing experiment.
DOI: 10.5061/dryad.25v031b/2
title: Disturbance experiment

description: Plant and soil data for multi-disturbance (biocide, grazing, mowing) experiment.
DOI: 10.5061/dryad.25v031b/3
title: plant community composition data for disturbance experiment

description: Plant community composition data for disturbance experiment.
DOI: 10.5061/dryad.25v031b/4
title: parameters for meta-analysis

description: Regional data (Montana and North Dakota) describing effect sizes for aggregate stability and infiltration associations.
DOI: 10.5061/dryad.25v031b/5
title: paired plot grazing experiment

description: Soil aggregate stability data for the paired plot grazing experiment.
DOI: 10.5061/dryad.2gf6910/1
title: Supplementary information Bardua et al

description: Supplementary information including seven figures, two tables (with specimen data) and two photos of specimens.
DOI: 10.5061/dryad.2gf6910/2
title: Bardua_et_al_composite_extant_fossil_tree

description: Composite tree of extant and fossil frogs used in this study. Consists of 87 extant frogs and 38 fossil frogs. Please see Bardua et al paper for details.
DOI: 10.5061/dryad.3dm147p/1
title: Fig. 1. data of localities of Terniopsis chanthaburiensis and T. heterostaminata

description: The data of localities are used for the distribution map.
DOI: 10.5061/dryad.3dm147p/2
title: Fig. 2. Sequence data used by phylogenetic analyses of Terniopsis

description: The sequence data are used for constructing the phylogenetic tree of Terniopsis.
DOI: 10.5061/dryad.4272kh0/1
title: SK_Ecology Letters code
DOI: 10.5061/dryad.4272kh0/2
title: SK_Ecology Letters data
DOI: 10.5061/dryad.4272kh0/3
title: SK_Ecology Letters sites
DOI: 10.5061/dryad.4c1246q/1
title: main_pan_analysis_II_intake_poisson_script_07022017

description: R script for analysing food intake using a GLMM
DOI: 10.5061/dryad.4c1246q/2
title: MASTER_analyses_II_R_file_intake_f

description: File containing the variables for the GLMM on food intake, analysed in R
DOI: 10.5061/dryad.4c1246q/3
title: MAIN_pan_analysis_III_movement_script_26092016

description: R script for analysing movement probability in focal trees using GLMM
DOI: 10.5061/dryad.4f10p/1
title: pedigree file

description: This is pedigree file with three columns: Tree ID, Mother ID and Father ID
DOI: 10.5061/dryad.4f10p/2
title: dataset for Dothistroma

description: Phenotypic observations for Dothistroma resistance with seven columns: trial ID, testedas (C: clone, F for full-sibs), tree ID, replicate, Setgroup, Dothistroma resistance in percentage and age of assessment
DOI: 10.5061/dryad.4f10p/3
title: dataset for diameter

description: Phenotypic observations for DBH with eight columns: trial ID, testedas (C: clone, F for full-sibs), tree ID, repicate, setgroup, row, DBH observation in millimeters and age of assessment
DOI: 10.15156/bio/sh099960.07fu
title: SH099960.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh099961.07fu
title: SH099961.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh099962.07fu
title: SH099962.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh099963.07fu
title: SH099963.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh099964.07fu
title: SH099964.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh099965.07fu
title: SH099965.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.