cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26305315.v1
title: Data and code Ecol Lett

description: Plant-soil feedback (PSF) can both positively and negatively affect plant populations. Diverse communities should dilute pathogens and mitigate negative PSF, whereas plant dominance should have the opposite effect. It is unclear, however, whether increased species and genetic diversity can have additive effects on pathogen dilution. Using soils from <i>Medicago sativa</i> production systems varying in dominance and diversity, we inoculated multiple species and cultivars to assess effects on PSF. We linked dominance and diversity to intra- and interspecific variation in PSF via changes in microbiome composition. Included data are the feature tables for each of the sequenced samples for bacteria (bact_meta_all.txt), fungi (fung.csv), oomycetes (oom.csv), and arbuscular mycorrhizal fungi (amf.csv). Also included is the code to generate the ordinations used in the paper (Correlations and Ordinations.R). The raw sequencing data has been deposited under BioProject accession PRJNA1125521 (https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA1125521).We also include the raw biomass data from the growth chamber experiment (Final Bennett Awodele data shoot mass.csv), all the field data (all_field_data.txt), and the data used to construct the structural equation model (Bennett et al Plant and soil data alfalfa study.csv). The code used to compare PSF values among cultivars and species is contained in “Correlations and Ordinations.R”. The code for the structural equation model is included in a word document (Bennett SPSS AMS syntax code.docx). The full model output is included as “AMOS model output.xlsx”, as are the summarized direct (regression weights for graphing.csv) and indirect effects (indirect effects for graphing.csv) used to generate Figures 2 and 3. The code for generating these figures is located in “interspecific PSF SEM model graphs.R”.
DOI: 10.6084/m9.figshare.5549632.v1
title: Insights into intermolecular interactions, electrostatic properties and the stability of C646 in the binding pocket of p300 histone acetyltransferase enzyme: a combined molecular dynamics and charge density study

description: Histone acetyltransferases (HATs) and histone deacetylases (HDACs) are enzymes that exhibit an important transcription activity. Dysfunction of these enzymes may lead to different diseases including cancer, cardiovascular, and other diseases. Therefore, these enzymes are the potential target for the generation of new therapeutics. C646 is a synthetic p300 HAT inhibitor; its structural and the electrostatic properties are the paradigm to understand its activity in the active site of p300 HAT enzyme. The docked C646 molecule in the active site forms expected key intermolecular interactions with the amino acid residues Trp1436, Tyr1467, and one water molecule (W1861); and these interactions are important for acetylation reaction. When compare the active site structure of C646 with the gas-phase structure, it is confirmed that the electron density distribution of polar bonds are highly altered, when the molecule present in the active site. In the gas-phase structure of C646, a large negative regions of electrostatic potential is found at the vicinity of O(4), O(5), and O(6) atoms; whereas, the negative region of these atoms are reduced in the active site. The molecular dynamics (MD) simulation also performed, it reveals the conformational stability and the intermolecular interactions of C646 molecule in the active site of p300.
DOI: 10.3535/w74-m5b-6n4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zv1-skq-8lf
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14880396.v1
title: SPI (Standardized Precipitation Index) based on multiple input dataset

description: Multiple timescale (1-12 month) Standardized Precipitation Index (SPI) based on ensemble mean of multiple precipitation dataset spanning 1981-2016
DOI: 10.6084/m9.figshare.3830298.v1
title: Climate and altitude zones on Borneo

description: This file contains spatial data on zones on Borneo within the context of:A. Altitude (i.e. Lowland &lt;500 mm and Highland &gt;=500)B. Annual rainfallC. Intermediate rainfall (Inner range and Middle range, representing area that are close and moderately close to intermediate rainfall that is optimal for plant productivity and agriculture (i.e. 150 mm per month during the dry season and 250 mm per month during the wet season), Lowlands outside the intermediate rainfall zone, and Highland)
DOI: 10.3535/kc9-e00-n01
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y3f-pwb-n8n
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27105970.v1
title: Supporting Data for “Different Magnitudes of Second-Order Jahn-Teller Effect in Isostructural NaMO<sub>2</sub>F<sub>2</sub> (M = Nb<sup>5+</sup>, Ta<sup>5+</sup>) Oxyfluorides”

description: This is the Supporting Dataset for the manuscript “Different Magnitudes of Second-Order Jahn-Teller Effect in Isostructural NaMO<sub>2</sub>F<sub>2</sub> (M = Nb<sup>5+</sup>, Ta<sup>5+</sup>) Oxyfluorides”. DOI: https://dx.doi.org/10.2139/ssrn.4968134The dataset comprises the following sections:Powder X-ray diffraction data. (directory)Thermogravimetric and differential thermal analyses data. (directory)Solid-state nuclear magnetic resonance spectroscopy data. (directory)First principle calculations data. (directory)Python scripts and raw numerical data for all figures included in the main manuscript and the Supporting Information. (directory)
DOI: 10.6084/m9.figshare.9911762.v1
title: Dataset 6.STL

description: mould for producing acoustic test blocks
DOI: 10.3535/7ll-vll-yde
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nvw-y3k-19p
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bcy-ne1-ht3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cet-4bf-3c2
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25452/figshare.plus.18470912.v1
title: A large and rich EEG dataset for modeling human visual object recognition

description: The human brain achieves visual object recognition through multiple stages of nonlinear transformations operating at a millisecond scale. To predict and explain these rapid transformations, computational neuroscientists employ machine learning modeling techniques. However, state-of-the-art models require massive amounts of data to properly train, and to the present day there is a lack of vast brain datasets which extensively sample the temporal dynamics of visual object recognition. Here we collected a large and rich dataset of high temporal resolution EEG responses to images of objects on a natural background. This dataset includes 10 participants, each with 82,160 trials spanning 16,740 image conditions coming from the THINGS database (https://things-initiative.org/). We release this dataset as a tool to foster research in visual neuroscience and computer vision.<br>For information regarding the experimental paradigm and the EEG recording protocol please refer to our paper (https://doi.org/10.1101/2022.03.15.484473).<br><br>A detailed description of the raw EEG data files, the preprocessed EEG data and the stimuli images can be found on OSF (https://doi.org/10.17605/OSF.IO/3JK45). <br>If you use any of our data, please cite our paper preprint (https://doi.org/10.1101/2022.03.15.484473) and our dataset (https://doi.org/10.25452/figshare.plus.18470912).
DOI: 10.3535/9bv-eq6-ynz
title: Bioturbation trace fossils

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bs2-mzq-r7g
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0td-z2p-yy1
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zq2-way-x36
title: Bioturbation trace fossils

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/b77-h44-ff4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lnn-1bc-k3g
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28156904.v1
title: Drought-induced weakening of temperature control on ecosystem carbon uptake across northern lands

description: <pre>Estimations of STree_ring-TAS, seasonal SGPP-TAS, SGPP-TAS_Annual and Trend of SGPP-TAS, Bayesian Information Criterion, etc.</pre>
DOI: 10.6084/m9.figshare.28655705.v1
title: The data of the published article (titled "Formation of Spongy Clinopyroxene: Insights from Eclogitic Inclusions in Diamonds", Journal of Petrology)

description: Table 1, Major element composition (in wt%) of primary cores and spongy rims of the studied clinopyroxene inclusions.Table 2, P-T parameters of spongy clinopyroxene<br>Supplementary TablesTable S1. FTIR, photoluminescence characteristics and morphology features of the studied diamondsTable S2. Chemical composition of sulfide inclusions from the studied diamonds Table S3. Summary of pMELTS modelling for the studied clinopyroxene inclusionsTable S4. pMELTS modelling for U-530 clinopyroxene inclusionTable S5. pMELTS modelling for U-345 clinopyroxene inclusionTable S6. pMELTS modelling for Cln-320 clinopyroxene inclusionTable S7. pMELTS modelling for Cln-268 clinopyroxene inclusionTable S8. pMELTS modelling for Cln-285 clinopyroxene inclusionTable S9. pMELTS modelling for the clinopyroxene inclusions W1, W5 and W14 reported by Taylor et al. (2000)Table S10. Raman peaks within the range of 1370–4500 cm–1 for the primary cores and spongy rims of the studied clinopyroxene inclusions<br><br>
DOI: 10.3535/2ll-7lg-b11
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fqw-57a-hyd
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/62z-xdt-b79
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y72-tz2-64f
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.4630090.v2
title: supplementary from Phase-space methods for the spin dynamics in condensed matter systems

description: Using the phase-space formulation of quantum mechanics, we derive a four-component Wigner equation for a system composed of spin-½ fermions (typically, electrons) including the Zeeman effect and the spin–orbit coupling. This Wigner equation is coupled to the appropriate Maxwell equations to form a self-consistent mean-field model. A set of semiclassical Vlasov equations with spin effects is obtained by expanding the full quantum model to first order in the Planck constant. The corresponding hydrodynamic equations are derived by taking velocity moments of the phase-space distribution function. A simple closure relation is proposed to obtain a closed set of hydrodynamic equations.
DOI: 10.3535/35j-smx-ph1
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fmx-6wy-n59
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bfq-nxy-81a
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y6f-71z-r14
title: Dolostone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23001797.v1
title: Additional file 19 of Comparison between 5 extractions methods in either plasma or serum to determine the optimal extraction and matrix combination for human metabolomics

description: Additional file 19. Table S15: Plasma chromatograms highlighting the differences between sample preparation protocols.The chromatograms were obtained using the Freestyle software. MeOH : methanol; MeOH:ACN : methanol combined with acetonitrile; ACN: acetonitrile; SPE : solid preparation extraction.
DOI: 10.6084/m9.figshare.3846963.v1
title: Dataset 1: Danloy Grasslands

description: Data was collected at the Danloy Grasslands at the York University Keele campus. It was collected by throwing a 1m by 1m quadrant onto a patch of grassland in a random location 20 times, and observing the various types of vegetation in the quadrant and quantifying it. The richness of species in each quadrant were counted, the amount of individuals of each species present in the quadrant were counted, the total percentage the vegetation covered in the quadrant was recorded, and the percentage of grass observed in the quadrant was recorded.<br>Hypothesis: A greater abundance of species in a given area or quadrant will reduce the percent cover of grass in that quadrant. This is because more individuals of different species compete with other species for resources such as sun exposure, resulting in growth and reproduction and therefore less room on the grassland floor for grass to grow.<br>Predictions: It is expected that a high percent of total cover will result in a high value of abundance of species.It is expected that a high value of richness of species will result in a high value of abundance of species.It is expected that a low percent of grass cover will result in a high value of abundance of species.
DOI: 10.3535/38r-j9x-pt0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.15468/dl.9zrjsf
title: Occurrence Download

description: A dataset containing 15412 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cordyceps Fr., 1818"
 ]
}

 The dataset includes 15412 records from 339 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009867-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/lg9-nhh-r9q
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mls-wxn-7j3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0jf-ynf-96x
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qd7-6me-mmz
title: Siltstone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1yy-k7j-997
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3ww-4aa-p8w
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/k83-dt6-00s
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t3k-7zt-8sg
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/bwbw83ysgr
title: HABIT - a program for predicting the morphology of molecular crystals

description: Abstract A FORTRAN program HABIT, which has been developed to aid in morphological predictions of molecular crystals, is described. The program generates a three-dimensional model of the crystal by translating a unit cell along the crystal directions to create a sphere limited by a user-defined radius. By a pairwise summation of the atom-atom interactions between a central molecule and all other molecules inside the sphere, the pogram calculates the lattice, slice and attachment energies. Since the at... Title of program: HABIT Catalogue Id: ABZL_v1_0 Nature of problem The relationship between the internal arrangement of a crystal and its external appearance. Versions of this program held in the CPC repository in Mendeley Data ABZL_v1_0; HABIT; 10.1016/0010-4655(91)90040-R This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.3535/vc5-d39-r4e
title: Conglomerate

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z9s-0r5-hvt
title: Argillite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/06x-yhp-b0m
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1wb-bfl-9ed
title: Siltstone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cz4-c2q-b9e
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4hf-hfz-0z7
title: Argillite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wnb-n30-scm
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/344-zpv-fm7
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4s4-g70-gw1
title: Coprulus oblongus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5gn-pkp-06v
title: Climacoconus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cl2-gbd-5kc
title: Coprulus oblongus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12700634.v1
title: Supplemental Text 2 - Emails

description: This is the recruitment email sent to professional societies and their members.<br>
DOI: 10.6084/m9.figshare.20495711.v1
title: Mycorrhization of strawberry plantlets potentiates the synthesis of phytochemicals during ex vitro acclimatization

description: ABSTRACT. Ex vitro strawberry plantlets from micropropagation and coinoculated with arbuscular mycorrhizal fungi (AMF) and biochar can provide beneficial health effects. In the present study, we evaluated the effects of different proportions of biochar in the presence and absence of AMF on the production of secondary metabolites in the leaves and roots of strawberry plantlets during ex vitro acclimatization. Additionally, the enzymatic activity of the substrate enriched with AMF and biochar was analyzed. The experiment consisted of the control (absence of the mycorrhizal community) and four biochar proportions (0, 3, 6, and 9% of the volume of the container) coinoculated with AMF. Plantlets produced on substrates enriched with AMF showed higher levels of polyphenols, flavonoids, phenolic acids, and tannins in the tissues analyzed than control plantlets. The combination of AMF and 9% biochar increased the content of total flavonoids in the leaves of strawberry plantlets and increased the activity of phosphatase. The substrate with up to 6% biochar and mycorrhizae showed increased β-glucosidase activity. In conclusion, mycorrhizae are excellent tools to improve the phytochemical quality of strawberry plantlets acclimatized ex vitro. The association between host plants, mycorrhizal symbionts, and bioactivators of these fungi potentiates properties beneficial to health, which can be exploited efficiently in sustainable agriculture.
DOI: 10.3535/6ja-zep-egc
title: Climacoconus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/da3-ld1-w68
title: Climacoconus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tn5-r9h-vq8
title: †Lophospira Whitfield, 1886

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ame-pv7-g1x
title: Coprulus oblongus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xwb-yr8-0xm
title: Coprulus oblongus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.15468/dl.ugw2t8
title: Occurrence Download

description: A dataset containing 3226039 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 3226039 records from 177 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009845-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/kar-rrk-kn2
title: †Lophospira Whitfield, 1886

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mn2-lq4-ma3
title: Climacoconus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.