cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4600309
title: FEA file

description: Finite element analysis file for Abaqus software (.cae format) from this paper:Chadwick, KP; Shefelbine, SJ; Pitsillides, AA; Hutchinson, JR. 2017. Finite-element modelling of mechanobiological factors influencing sesamoid tissue morphology in the patellartendon of an ostrich. R. Soc. opensci. 4:170133. http://dx.doi.org/10.1098/rsos.170133
DOI: 10.6084/m9.figshare.4600312
title: CT scan data

description: CT scan DICOM format image slices (.zip archive) from this paper:Chadwick, KP; Shefelbine, SJ; Pitsillides, AA; Hutchinson, JR. 2017. Finite-element modelling of mechanobiological factors influencing sesamoid tissue morphology in the patellartendon of an ostrich. R. Soc. opensci. 4:170133. http://dx.doi.org/10.1098/rsos.170133
DOI: 10.6084/m9.figshare.4600309.v1
title: FEA file

description: Finite element analysis file for Abaqus software (.cae format) from this paper:Chadwick, KP; Shefelbine, SJ; Pitsillides, AA; Hutchinson, JR. 2017. Finite-element modelling of mechanobiological factors influencing sesamoid tissue morphology in the patellartendon of an ostrich. R. Soc. opensci. 4:170133. http://dx.doi.org/10.1098/rsos.170133
DOI: 10.6084/m9.figshare.4600276
title: Confidence interval accuracy data and graphs

description: Confidence interval accuracy data and graphs from the paper: The Accuracy of Confidence Intervals for Field Normalised Indicators
DOI: 10.6084/m9.figshare.4600225
title: Determination and confirmation of selective estrogen receptor modulators (SERMs), anti-estrogens and aromatase inhibitors in bovine and porcine urine using UHPLC-MS/MS

description: Selective estrogen receptor modulators (SERMs), anti-estrogens and aromatase inhibitors are prohibited in human sports doping. However, they also present a risk of being used illegally in animal husbandry for fattening purposes. A method was developed and validated using UHPLC-MS/MS for the determination and confirmation of SERMs, anti-estrogens and aromatase inhibiters in bovine and porcine urine. This method was used in a survey of more than 200 bovine and porcine urine samples from Dutch farms. In 18 out of 103 porcine urine samples (17%) and two out of 114 bovine samples (2%) formestane, an aromatase inhibitor, was detected. None of the other compounds was detected. From human doping control it is known that formestane can, in some cases, be of natural origin. Analyses of reference samples from untreated bovine and porcine animals demonstrated the presence of formestane in bovine animals, but not yet in porcine animals. Future research will focus on whether the detected formestane in porcine and bovine urine is from endogenous or exogenous origin, using GC-c-IRMS.
DOI: 10.6084/m9.figshare.4600231.v1
title: A network view of innovation performance for multinational corporation subsidiaries

description: A network view of innovation performance for multinational corporation subsidiaries: functionality and geography. <i>Regional Studies</i>. The literature has recognized the need to understand better the role of network partner characteristics on innovative performance in cases of multiple network embeddedness. This study argues that innovation performance is partly a function of the value created through intra- and inter-organizational flows of knowledge within and across regions. The analyses are based on two random-effects logistic models with sample selection. Results show that the functional breadth of a subsidiary’s inter-organizational network has an inverted ‘U’-shaped relationship with its radical and incremental innovation performance. Additionally, radical innovation performance is influenced by internal and external partners from different geographical locations.
DOI: 10.6084/m9.figshare.4600225.v1
title: Determination and confirmation of selective estrogen receptor modulators (SERMs), anti-estrogens and aromatase inhibitors in bovine and porcine urine using UHPLC-MS/MS

description: Selective estrogen receptor modulators (SERMs), anti-estrogens and aromatase inhibitors are prohibited in human sports doping. However, they also present a risk of being used illegally in animal husbandry for fattening purposes. A method was developed and validated using UHPLC-MS/MS for the determination and confirmation of SERMs, anti-estrogens and aromatase inhibiters in bovine and porcine urine. This method was used in a survey of more than 200 bovine and porcine urine samples from Dutch farms. In 18 out of 103 porcine urine samples (17%) and two out of 114 bovine samples (2%) formestane, an aromatase inhibitor, was detected. None of the other compounds was detected. From human doping control it is known that formestane can, in some cases, be of natural origin. Analyses of reference samples from untreated bovine and porcine animals demonstrated the presence of formestane in bovine animals, but not yet in porcine animals. Future research will focus on whether the detected formestane in porcine and bovine urine is from endogenous or exogenous origin, using GC-c-IRMS.
DOI: 10.6084/m9.figshare.4600222
title: Characterisation of food contact non-stick coatings containing TiO<sub>2</sub> nanoparticles and study of their possible release into food

description: Novel nanoparticles containing non-stick coatings have been developed for food contact applications such as frying pans. Possible release of nanoparticles from such coatings into food is not known. In this paper, the characterisation of commercially available non-stick coatings was performed by use of FTIR, electron and optical microscopy, EDXS and XRD analysis. Characterisation revealed that the coatings contained micron- and nanosized rutile TiO<sub>2</sub> particles, and quartz SiO<sub>2</sub> embedded in a silicone polymer matrix. In order to estimate possible migration of TiO<sub>2</sub> nanoparticles from coatings into food, migration tests into simulants (deionised water, 3% acetic acid and 5 g l<sup>–1</sup> citric acid) were performed (2 h at 100°C), and thermal and mechanical degradation of the matrix was studied. Simulants were analysed by ICP-MS after ultrafiltration and by microwave-assisted digestion. The concentration of titanium-containing particles that migrated into simulants was up to 861 µg l<sup>–1</sup> (147 µg dm<sup>–</sup><sup>2</sup>). Titanium was present in simulants in ionic form as well. The presence of TiO<sub>2</sub> nanoparticles in 3% acetic acid was confirmed by SEM-EDXS analysis. Thermal stability study (TG/DSC MS analysis) did not show degradation of the matrix under foreseeable conditions of use, but mechanical degradation studies (scratch and tribological testing) showed possible release (microgram quantities per punched sample) of titanium-containing nanoparticles. The matrix degradation results were confirmed by observations of the morphology of the same type of coatings actually used for food preparation. Dissolution from the surface and matrix degradation can both contribute to nanoparticles release from this type of non-stick food contact coatings.
DOI: 10.6084/m9.figshare.4600276.v1
title: Confidence interval accuracy data and graphs

description: Confidence interval accuracy data and graphs from the paper: The Accuracy of Confidence Intervals for Field Normalised Indicators
DOI: 10.6084/m9.figshare.4600174
title: Environmental metabarcoding for monitoring benthic communities.

description: The files provided here are the raw fastq files used for the manuscript Laroche et al., 2017 "Metabarcoding monitoring analysis: the pros and cons of using co-extracted environmental DNA and RNA data to assess offshore oil production impacts on benthic communities." which currently under peer-review.<br>Environmental DNA/RNA samples were collected in the Tasman sea (New Zealand) from marine sediment in proximity to an offshore oil production platform. <br>Amplicons were sequenced on an Illumina MiSeq platform.<br>The present files are demultiplexed fastq files of bacteria (16S) and eukaryotes (18S). <br>In file name, BED = DNA sequences and BEC = RNA sequences, the following number (e.g BEC_43...) represent the sample number. R1 = forward sequences, R2 = reverse sequences. The taxa is identified at the end of the name file (e.g. _Bac.fq for bacteria and _Euk.fq for eukaryotes).<br><br>Please refer to the manuscript for additional information on the dataset.<br><br>
DOI: 10.6084/m9.figshare.4600222.v2
title: Characterisation of food contact non-stick coatings containing TiO<sub>2</sub> nanoparticles and study of their possible release into food

description: Novel nanoparticles containing non-stick coatings have been developed for food contact applications such as frying pans. Possible release of nanoparticles from such coatings into food is not known. In this paper, the characterisation of commercially available non-stick coatings was performed by use of FTIR, electron and optical microscopy, EDXS and XRD analysis. Characterisation revealed that the coatings contained micron- and nanosized rutile TiO<sub>2</sub> particles, and quartz SiO<sub>2</sub> embedded in a silicone polymer matrix. In order to estimate possible migration of TiO<sub>2</sub> nanoparticles from coatings into food, migration tests into simulants (deionised water, 3% acetic acid and 5 g l<sup>–1</sup> citric acid) were performed (2 h at 100°C), and thermal and mechanical degradation of the matrix was studied. Simulants were analysed by ICP-MS after ultrafiltration and by microwave-assisted digestion. The concentration of titanium-containing particles that migrated into simulants was up to 861 µg l<sup>–1</sup> (147 µg dm<sup>–</sup><sup>2</sup>). Titanium was present in simulants in ionic form as well. The presence of TiO<sub>2</sub> nanoparticles in 3% acetic acid was confirmed by SEM-EDXS analysis. Thermal stability study (TG/DSC MS analysis) did not show degradation of the matrix under foreseeable conditions of use, but mechanical degradation studies (scratch and tribological testing) showed possible release (microgram quantities per punched sample) of titanium-containing nanoparticles. The matrix degradation results were confirmed by observations of the morphology of the same type of coatings actually used for food preparation. Dissolution from the surface and matrix degradation can both contribute to nanoparticles release from this type of non-stick food contact coatings.
DOI: 10.6084/m9.figshare.4600102
title: Development and performance of a parsimonious model to estimate temperature in sewer networks

description: This paper presents a model (inspired by another model) to calculate water temperature in free-surface flow with two main innovations: the convective heat transfer occurs only at the wetted perimeter of pipes, and the model was integrated to commercial software used for hydraulic calculations in drainage systems. Given these innovations, we could reduce the number of modeling input data to calculate the temperature of water and soil in the radial and tangential directions along the pipes, with the advantages of using industry-standard software. To test the performance of the model, it was firstly calibrated in two sets of experiments (to calibrate the hydraulic and the thermal parameters separately), and benchmarked with a third controlled discharge against the case model. The results indicate that in unsteady-state situations the parsimonious model can be twice as accurate as the underlying model because the parsimonious model considers the hydraulic influence of sewer infrastructure.
DOI: 10.6084/m9.figshare.4600162
title: Goring and Williams - Ecology Letters, submitted (2016/2017)

description: The submitted version of Goring and Williams (in press) for Ecology Letters.
DOI: 10.6084/m9.figshare.4600162.v1
title: Goring and Williams - Ecology Letters, submitted (2016/2017)

description: The submitted version of Goring and Williams (in press) for Ecology Letters.
DOI: 10.6084/m9.figshare.4600102.v1
title: Development and performance of a parsimonious model to estimate temperature in sewer networks

description: This paper presents a model (inspired by another model) to calculate water temperature in free-surface flow with two main innovations: the convective heat transfer occurs only at the wetted perimeter of pipes, and the model was integrated to commercial software used for hydraulic calculations in drainage systems. Given these innovations, we could reduce the number of modeling input data to calculate the temperature of water and soil in the radial and tangential directions along the pipes, with the advantages of using industry-standard software. To test the performance of the model, it was firstly calibrated in two sets of experiments (to calibrate the hydraulic and the thermal parameters separately), and benchmarked with a third controlled discharge against the case model. The results indicate that in unsteady-state situations the parsimonious model can be twice as accurate as the underlying model because the parsimonious model considers the hydraulic influence of sewer infrastructure.
DOI: 10.6084/m9.figshare.4600174.v1
title: Laroche_et_al.2017_Maari

description: Environmental DNA/RNA samples were collected in the Tasman sea (New Zealand) from marine sediment in proximity to an offshore oil production platform. <br>Amplicons were sequenced on an Illumina MiSeq platform.<br>The present files are demultiplexed fastq files of bacteria (16S) and eukaryotes (18S). <br>In file name, BED = DNA sequences and BEC = RNA sequences, the following number (e.g BEC_43...) represent the sample number. R1 = forward sequences, R2 = reverse sequences. The taxa is identified at the end of the name file (e.g. _Bac.fq for bacteria and _Euk.fq for eukaryotes).<br><br>Please refer to the following manuscript for additional information on the dataset:<br>Laroche et al. (2017). Metabarcoding monitoring analysis: the pros and cons of using co-extracted environmental DNA and RNA data to assess offshore oil production impacts on benthic communities.
DOI: 10.6084/m9.figshare.4600174.v2
title: Environmental metabarcoding for monitoring benthic communities.

description: The files provided here are the raw fastq files used for the manuscript Laroche et al., 2017 "Metabarcoding monitoring analysis: the pros and cons of using co-extracted environmental DNA and RNA data to assess offshore oil production impacts on benthic communities." which currently under peer-review.<br>Environmental DNA/RNA samples were collected in the Tasman sea (New Zealand) from marine sediment in proximity to an offshore oil production platform. <br>Amplicons were sequenced on an Illumina MiSeq platform.<br>The present files are demultiplexed fastq files of bacteria (16S) and eukaryotes (18S). <br>In file name, BED = DNA sequences and BEC = RNA sequences, the following number (e.g BEC_43...) represent the sample number. R1 = forward sequences, R2 = reverse sequences. The taxa is identified at the end of the name file (e.g. _Bac.fq for bacteria and _Euk.fq for eukaryotes).<br><br>Please refer to the manuscript for additional information on the dataset.<br><br>
DOI: 10.6084/m9.figshare.4599814
title: EL_EM_2017_Data.xlsx

description: In this data set are (1) the measured species abundances of the mesocosm for the 7+ year period, (2) the model simulations without applying data assimilation for all 3 parameterizations considered, and (3) the model simulations with the use of data assimilation for all 3 parameterizations considered.Please refer to Massoud et al. 2017 (Ecology Letters, in review) for further details.
DOI: 10.6084/m9.figshare.4600174.v4
title: Environmental metabarcoding for monitoring benthic communities.

description: The files provided here are the raw fastq files used for the manuscript Laroche et al., 2017 "Metabarcoding monitoring analysis: the pros and cons of using co-extracted environmental DNA and RNA data to assess offshore oil production impacts on benthic communities." which currently under peer-review.<br>Environmental DNA/RNA samples were collected in the Tasman sea (New Zealand) from marine sediment in proximity to an offshore oil production platform. <br>Amplicons were sequenced on an Illumina MiSeq platform.<br>The present files are demultiplexed fastq files of bacteria (16S) and eukaryotes (18S). <br>In file name, BED = DNA sequences and BEC = RNA sequences, the following number (e.g BEC_43...) represent the sample number. R1 = forward sequences, R2 = reverse sequences. The taxa is identified at the end of the name file (e.g. _Bac.fq for bacteria and _Euk.fq for eukaryotes).<br><br>Please refer to the manuscript for additional information on the dataset.<br><br>
DOI: 10.6084/m9.figshare.4599814.v1
title: EL_EM_2017_Data.xlsx

description: In this data set are (1) the measured species abundances of the mesocosm for the 7+ year period, (2) the model simulations without applying data assimilation for all 3 parameterizations considered, and (3) the model simulations with the use of data assimilation for all 3 parameterizations considered.Please refer to Massoud et al. 2017 (Ecology Letters, in review) for further details.
DOI: 10.6084/m9.figshare.4600174.v3
title: Environmental metabarcoding for monitoring benthic communities.

description: The files provided here are the raw fastq files used for the manuscript Laroche et al., 2017 "Metabarcoding monitoring analysis: the pros and cons of using co-extracted environmental DNA and RNA data to assess offshore oil production impacts on benthic communities." which currently under peer-review.<br>Environmental DNA/RNA samples were collected in the Tasman sea (New Zealand) from marine sediment in proximity to an offshore oil production platform. <br>Amplicons were sequenced on an Illumina MiSeq platform.<br>The present files are demultiplexed fastq files of bacteria (16S) and eukaryotes (18S). <br>In file name, BED = DNA sequences and BEC = RNA sequences, the following number (e.g BEC_43...) represent the sample number. R1 = forward sequences, R2 = reverse sequences. The taxa is identified at the end of the name file (e.g. _Bac.fq for bacteria and _Euk.fq for eukaryotes).<br><br>Please refer to the manuscript for additional information on the dataset.<br><br>
DOI: 10.6084/m9.figshare.4598269
title: Integrated Marketing Communications Process Model

description: The model illustrates the marketing communications process from sender to receivers including intervening factors that affect effective communications. The model extends and provides greater sophistication to the widely accepted but simplistic Schramm communications model. Importantly, the feedback process is highlighted as is the more complex process of marketing communications messages being received and passed on by both target and non-target receivers through the 'web of social communications' utilising both face-to-face traditional communications as well as the ever burgeoning social media.This IMC PROCESS model is one of three that form a framework of integrated marketing communications which are more fully explained in the links to a Prezi presentation and a conference paper accessible through academia.edu. The other two models are IMC RABOSTIC PLANNING model and IMC WHEEL model.
DOI: 10.6084/m9.figshare.4598239
title: Disordered Cellulose-Based Nanostructures for Enhanced Light Scattering

description: Cellulose is the most abundant bio-polymer on earth. Cellulose fibres, such as the one extracted form cotton or woodpulp, have been used by humankind for hundreds of years to make textiles and paper. Here we show how, by engineering light matter-interaction, we can optimise light scattering using exclusively cellulose nanocrystals. The produced material is sustainable, biocompatible and, when compared to ordinary microfibre-based paper, it shows enhanced scattering strength (x4) yielding a transport mean free path as low as 3.5 µm in the visible light range. The experimental results are in a good agreement with the theoretical predictions obtained with a diffusive model for light propagation.
DOI: 10.6084/m9.figshare.4598224
title: Data associated with Leavitt et al. 2017 "Hydrogen isotope ratios of lipids of Thermoanaerobacterium saccharolyticum: a comparison of wild type and nfn- transhydrogenase mutants" Organic Geochemistry

description: Supplementary information contains- methods- lipid peak areas- hydrogen isotopic ratios for lipids, media, and derivatives<br>
DOI: 10.6084/m9.figshare.4598239.v1
title: Disordered Cellulose-Based Nanostructures for Enhanced Light Scattering

description: Cellulose is the most abundant bio-polymer on earth. Cellulose fibres, such as the one extracted form cotton or woodpulp, have been used by humankind for hundreds of years to make textiles and paper. Here we show how, by engineering light matter-interaction, we can optimise light scattering using exclusively cellulose nanocrystals. The produced material is sustainable, biocompatible and, when compared to ordinary microfibre-based paper, it shows enhanced scattering strength (x4) yielding a transport mean free path as low as 3.5 µm in the visible light range. The experimental results are in a good agreement with the theoretical predictions obtained with a diffusive model for light propagation.
DOI: 10.6084/m9.figshare.4598224.v1
title: Data associated with Leavitt et al. 2017 "Hydrogen isotope ratios of lipids of Thermoanaerobacterium saccharolyticum: a comparison of wild type and nfn- transhydrogenase mutants" Organic Geochemistry

description: Supplementary information contains- methods- lipid peak areas- hydrogen isotopic ratios for lipids, media, and derivatives<br>
DOI: 10.6084/m9.figshare.4598155
title: Accessibility and update status of published sofware: benefits and missed opportunities

description: Dataset accompanying the article "Accessibility and update<br>status of published sofware: benefits and missed opportunities "
DOI: 10.6084/m9.figshare.4598155.v1
title: Accessibility and update status of published sofware: benefits and missed opportunities

description: Dataset accompanying the article "Accessibility and update<br>status of published sofware: benefits and missed opportunities "
DOI: 10.6084/m9.figshare.4598074
title: Table S2. Early Andean tectonomagmatic stages in north Patagonia: insights from field and geochemical data

description: Table S2. Geochemical analysis of Jurassic and Cretaceous volcanic rocks (oxides in wt.%, trace elements in ppm).
DOI: 10.6084/m9.figshare.4598062
title: Table S3. Early Andean tectonomagmatic stages in north Patagonia: insights from field and geochemical data

description: Table S3. Sr, Nd and Pb isotopic composition of Jurassic and Cretaceous volcanic rocks.
DOI: 10.6084/m9.figshare.4598068
title: Table S1. Early Andean tectonomagmatic stages in north Patagonia: insights from field and geochemical data

description: Table S1. Petrographic data from the Jurassic (Lago la Plata Formation) and Cretaceous (Divisadero Group) samples.
DOI: 10.6084/m9.figshare.4598068.v1
title: Table S1. Early Andean tectonomagmatic stages in north Patagonia: insights from field and geochemical data

description: Table S1. Petrographic data from the Jurassic (Lago la Plata Formation) and Cretaceous (Divisadero Group) samples.
DOI: 10.6084/m9.figshare.4598047
title: EFoldMine analysis data

description: The EFoldMine_analysisData contains three directories:<br><br>MS_analysis/ contains information about MS HDX data (as Python dictionary in infoDict_msProteins.py) in relation to EFoldMine predictions (.pred file in dynaMineResults/)<br><br>psicov/ contains information about residues with an evolutionary co-variation signal from the PSICOV dataset (as Python pickle in degree.pickle) in relation to EFoldMine predictions (.pred file in dynaMineResults/)<br><br>pisces/ contains protein structure-derived parameters from a PISCES subset (as Python dictionary in infoDict_pisces.py) in relation to EFoldMine predictions (.pred file in dynaMineResults/)<br><br>The prediction.tgz files contains the full features and cross-validation performed to develop EFoldMine.<br>