cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2yeks3
title: Occurrence Download

description: A dataset containing 177 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Calidris himantopus (Bonaparte, 1826))",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 177 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019611-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34804/supra.20240613558
title: Chelate Cooperativity and Spacer Length Effects on the Assembly Thermodynamics and Kinetics of Divalent Pseudorotaxanes

description: Homo- and heterodivalent crown-ammonium pseudorotaxanes with different spacers connecting the two axle ammonium binding sites have been synthesized and characterized by NMR spectroscopy and ESI mass spectrometry. The homodivalent pseudorotaxanes are investigated with respect to the thermodynamics of divalent binding and to chelate cooperativity. The shortest spacer exhibits a chelate cooperativity much stronger than that of the longer spacers. On the basis of crystal structure, this can be explained by a noninnocent spacer, which contributes to the binding strength in addition to the two binding sites. Already very subtle changes in the spacer length, i.e., the introduction of an additional methylene group, cause substantial changes in the magnitude of cooperative binding as expressed in the large differences in effective molarity. With a similar series of heterodivalent pseudorotaxanes, the spacer effects on the barrier for the intramolecular threading step has been examined with the result that the shortest spacer causes a strained transition structure and thus the second binding event occurs slower than that of the longer spacers. The activation enthalpies and entropies show clear trends. While the longer spacers reduce the enthalpic strain that is present in the transition state for the shortest member of the series, the longer spacers become entropically slightly more unfavorable because of conformational fixation of the spacer chain during the second binding event. These results clearly show the noninnocent spacers to complicate the analysis of multivalent binding. An approximate description which considers the binding sites to be connected just by a flexible chain turns out to be more a rough approximation than a good model. The second conclusion from the results presented here is that multivalency is expressed in both the thermodynamics and the kinetics in different ways. A spacer optimized for strong binding is suboptimal for fast pseudorotaxane formation.
DOI: 10.15468/dl.cqbfvn
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.30_1",
 "TaxonKey is Manglietia insignis (Wall.) Blume",
 "Year 1950-2025"
 ]
}

 The dataset includes 116 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019615-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pbr6fw
title: Occurrence Download

description: A dataset containing 341052 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Persicaria maculosa Gray"
 ]
}

 The dataset includes 341052 records from 2415 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019601-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11244102
title: Search Strategies for the Generic Justification Evidence Synthesis: magnetic resonance guided radiotherapy

description: The dataset includes the complete, reproducible search strategies for all bibliographic databases searched during this project. The search strategies were designed to answer the following research questions: 

RQ1. In patients with cancer requiring radiotherapy, does the choice of image-guided modality (MRgRT versus other) result in a difference in clinical effectiveness?

RQ2. In patients with cancer requiring radiotherapy, does the choice of image-guided modality (MRgRT versus other) result in a difference in potential harms?
DOI: 10.5281/zenodo.15518923
title: Supplementary Materials for the Generic Justification Evidence Synthesis: magnetic resonance guided radiotherapy
DOI: 10.5281/zenodo.15518924
title: Supplementary Materials for the Generic Justification Evidence Synthesis: magnetic resonance guided radiotherapy
DOI: 10.5281/zenodo.15260223
title: Predictions to Benchmark AlphaFold2 for Small Linear Motifs (SLiM) prediction - PART2/5

description: AlphaFold2 models from the publication entitled "A simple workflow to identify novel Small Linear Motif (SLiM)-mediated interactions with AlphaFold".

 

! This is the part2/5. You need all five parts in the same folder for proper unzip. If you are Windows or Mac users, you will need unziping app such as "7zip" or "The unarchiver" respectively. You should unzip the .zip file with .z0i present within the same location.

 

This archive includes AlphaFold2 Multimer v3 predictions for the 242 SLiM-partner from ELM_dataset and noPDB_dataset. Each prediction is separated in a unique folder. Each folder contains five .pdb structures and their associated .json score files, as well as the .a3m multiple sequence alignment file. Additionally, it contains .pickle files required for minD.
DOI: 10.5281/zenodo.15260224
title: Predictions to Benchmark AlphaFold2 for Small Linear Motifs (SLiM) prediction - PART2/5

description: AlphaFold2 models from the publication entitled "A simple workflow to identify novel Small Linear Motif (SLiM)-mediated interactions with AlphaFold".

 

! This is the part2/5. You need all five parts in the same folder for proper unzip. If you are Windows or Mac users, you will need unziping app such as "7zip" or "The unarchiver" respectively. You should unzip the .zip file with .z0i present within the same location.

 

This archive includes AlphaFold2 Multimer v3 predictions for the 242 SLiM-partner from ELM_dataset and noPDB_dataset. Each prediction is separated in a unique folder. Each folder contains five .pdb structures and their associated .json score files, as well as the .a3m multiple sequence alignment file. Additionally, it contains .pickle files required for minD.
DOI: 10.15468/dl.9ha6nu
title: Occurrence Download

description: A dataset containing 4909 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dianthus arenarius L.",
 "Year 1970-2025"
 ]
}

 The dataset includes 4909 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020177-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15273251
title: Predictions to Benchmark AlphaFold2 for Small Linear Motifs (SLiM) prediction - PART3/5

description: AlphaFold2 models from the publication entitled "A simple workflow to identify novel Small Linear Motif (SLiM)-mediated interactions with AlphaFold".

 

! This is the part3/5. You need all five parts in the same folder for proper unzip. If you are Windows or Mac users, you will need unziping app such as "7zip" or "The unarchiver" respectively. You should unzip the .zip file with .z0i present within the same location.

 

This archive includes AlphaFold2 Multimer v3 predictions for the 242 SLiM-partner from ELM_dataset and noPDB_dataset. Each prediction is separated in a unique folder. Each folder contains five .pdb structures and their associated .json score files, as well as the .a3m multiple sequence alignment file. Additionally, it contains .pickle files required for minD.
DOI: 10.5281/zenodo.15273252
title: Predictions to Benchmark AlphaFold2 for Small Linear Motifs (SLiM) prediction - PART3/5

description: AlphaFold2 models from the publication entitled "A simple workflow to identify novel Small Linear Motif (SLiM)-mediated interactions with AlphaFold".

 

! This is the part3/5. You need all five parts in the same folder for proper unzip. If you are Windows or Mac users, you will need unziping app such as "7zip" or "The unarchiver" respectively. You should unzip the .zip file with .z0i present within the same location.

 

This archive includes AlphaFold2 Multimer v3 predictions for the 242 SLiM-partner from ELM_dataset and noPDB_dataset. Each prediction is separated in a unique folder. Each folder contains five .pdb structures and their associated .json score files, as well as the .a3m multiple sequence alignment file. Additionally, it contains .pickle files required for minD.
DOI: 10.5281/zenodo.15273253
title: Predictions to Benchmark AlphaFold2 for Small Linear Motifs (SLiM) prediction - PART4/5

description: AlphaFold2 models from the publication entitled "A simple workflow to identify novel Small Linear Motif (SLiM)-mediated interactions with AlphaFold".

 

! This is the part4/5. You need all five parts in the same folder for proper unzip. If you are Windows or Mac users, you will need unziping app such as "7zip" or "The unarchiver" respectively. You should unzip the .zip file with .z0i present within the same location.

 

This archive includes AlphaFold2 Multimer v3 predictions for the 242 SLiM-partner from ELM_dataset and noPDB_dataset. Each prediction is separated in a unique folder. Each folder contains five .pdb structures and their associated .json score files, as well as the .a3m multiple sequence alignment file. Additionally, it contains .pickle files required for minD.
DOI: 10.5281/zenodo.15273254
title: Predictions to Benchmark AlphaFold2 for Small Linear Motifs (SLiM) prediction - PART4/5

description: AlphaFold2 models from the publication entitled "A simple workflow to identify novel Small Linear Motif (SLiM)-mediated interactions with AlphaFold".

 

! This is the part4/5. You need all five parts in the same folder for proper unzip. If you are Windows or Mac users, you will need unziping app such as "7zip" or "The unarchiver" respectively. You should unzip the .zip file with .z0i present within the same location.

 

This archive includes AlphaFold2 Multimer v3 predictions for the 242 SLiM-partner from ELM_dataset and noPDB_dataset. Each prediction is separated in a unique folder. Each folder contains five .pdb structures and their associated .json score files, as well as the .a3m multiple sequence alignment file. Additionally, it contains .pickle files required for minD.
DOI: 10.5281/zenodo.15273262
title: Predictions to Benchmark AlphaFold2 for Small Linear Motifs (SLiM) prediction - PART5/5

description: AlphaFold2 models from the publication entitled "A simple workflow to identify novel Small Linear Motif (SLiM)-mediated interactions with AlphaFold".

 

! This is the part5/5. You need all five parts in the same folder for proper unzip. If you are Windows or Mac users, you will need unziping app such as "7zip" or "The unarchiver" respectively. You should unzip the .zip file with .z0i present within the same location.

 

This archive includes AlphaFold2 Multimer v3 predictions for the 242 SLiM-partner from ELM_dataset and noPDB_dataset. Each prediction is separated in a unique folder. Each folder contains five .pdb structures and their associated .json score files, as well as the .a3m multiple sequence alignment file. Additionally, it contains .pickle files required for minD.
DOI: 10.5281/zenodo.15273263
title: Predictions to Benchmark AlphaFold2 for Small Linear Motifs (SLiM) prediction - PART5/5

description: AlphaFold2 models from the publication entitled "A simple workflow to identify novel Small Linear Motif (SLiM)-mediated interactions with AlphaFold".

 

! This is the part5/5. You need all five parts in the same folder for proper unzip. If you are Windows or Mac users, you will need unziping app such as "7zip" or "The unarchiver" respectively. You should unzip the .zip file with .z0i present within the same location.

 

This archive includes AlphaFold2 Multimer v3 predictions for the 242 SLiM-partner from ELM_dataset and noPDB_dataset. Each prediction is separated in a unique folder. Each folder contains five .pdb structures and their associated .json score files, as well as the .a3m multiple sequence alignment file. Additionally, it contains .pickle files required for minD.
DOI: 10.5281/zenodo.15236654
title: Predictions to Benchmark AlphaFold3 for Small Linear Motifs (SLiM) prediction

description: AlphaFold3 models from the publication entitled "A simple workflow to identify novel Small Linear Motif (SLiM)-mediated interactions with AlphaFold".

 

This archive includes 52 AlphaFold3 predictions used to benchmark AlphaFold3 for SLiM prediction. The predictions are separated into folders. Each folder contains five .cif structures and their associated full_data_*.json score files.
DOI: 10.5281/zenodo.15236655
title: Predictions to Benchmark AlphaFold3 for Small Linear Motifs (SLiM) prediction

description: AlphaFold3 models from the publication entitled "A simple workflow to identify novel Small Linear Motif (SLiM)-mediated interactions with AlphaFold".

 

This archive includes 52 AlphaFold3 predictions used to benchmark AlphaFold3 for SLiM prediction. The predictions are separated into folders. Each folder contains five .cif structures and their associated full_data_*.json score files.
DOI: 10.15468/dl.tmm2ec
title: Occurrence Download

description: A dataset containing 797 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cipuropsis capituligera (Griseb.) Christenh. & Byng"
 ]
}

 The dataset includes 797 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020180-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15235708
title: hRSK2-partner BINARY AlphaFold2 multimer v3 models for Small Linear Motifs (SLiM) prediction

description: AlphaFold2 multimer models from the publication entitled "A simple workflow to identify novel Small Linear Motif (SLiM)-mediated interactions with AlphaFold".

 

This archive includes 220 hRSK2-partner AlphaFold2 Multimer v3 predictions, organized into folders. Each folder contains five .pdb structures and their associated .json score files, as well as the .a3m multiple sequence alignment file.
DOI: 10.5281/zenodo.15235709
title: hRSK2-partner BINARY AlphaFold2 multimer v3 models for Small Linear Motifs (SLiM) prediction

description: AlphaFold2 multimer models from the publication entitled "A simple workflow to identify novel Small Linear Motif (SLiM)-mediated interactions with AlphaFold".

 

This archive includes 220 hRSK2-partner AlphaFold2 Multimer v3 predictions, organized into folders. Each folder contains five .pdb structures and their associated .json score files, as well as the .a3m multiple sequence alignment file.
DOI: 10.15468/dl.sd4kj9
title: Occurrence Download

description: A dataset containing 573 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Davidia involucrata Baill."
 ]
}

 The dataset includes 573 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020181-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15236154
title: hRSK2-partner MONOMERIC AlphaFold2 models for Small Linear Motifs (SLiM) prediction

description: AlphaFold2 monomer models from the publication entitled "A simple workflow to identify novel Small Linear Motif (SLiM)-mediated interactions with AlphaFold".

 

This archive contains monomeric AlphaFold2 Multimer v3 predictions for 220 hRSK2 partner proteins (modeled individually, without RSK2). The predictions are organized into folders, one per partner. Each folder includes five .json score files required for AlphaSLiM script.
DOI: 10.5281/zenodo.15236153
title: hRSK2-partner MONOMERIC AlphaFold2 models for Small Linear Motifs (SLiM) prediction

description: AlphaFold2 monomer models from the publication entitled "A simple workflow to identify novel Small Linear Motif (SLiM)-mediated interactions with AlphaFold".

 

This archive contains monomeric AlphaFold2 Multimer v3 predictions for 220 hRSK2 partner proteins (modeled individually, without RSK2). The predictions are organized into folders, one per partner. Each folder includes five .json score files required for AlphaSLiM script.
DOI: 10.6084/m9.figshare.28348169
title: Supplementary Tables S1-S5 for research article "Machine learning model for assessing melting pressure conditions of the TTG genesis: Implications for the timing of the onset of global plate tectonics"

description: This study reconstructs TTG rock compositions and melting pressures through phase equilibrium simulations and machine learning regression models.
DOI: 10.6084/m9.figshare.28348169.v3
title: Supplementary Tables S1-S5 for research article "Machine learning model for assessing melting pressure conditions of the TTG genesis: Implications for the timing of the onset of global plate tectonics"

description: This study reconstructs TTG rock compositions and melting pressures through phase equilibrium simulations and machine learning regression models.
DOI: 10.6084/m9.figshare.28348169.v2
title: Supplementary Tables S1-S5 for research article "Machine learning model for assessing melting pressure conditions of the TTG genesis: Implications for the timing of the onset of plate tectonics"

description: This study reconstructs TTG rock compositions and melting pressures through phase equilibrium simulations and machine learning regression models.
DOI: 10.15468/dl.sw8y58
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Anser brachyrhynchus Baillon, 1834)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020184-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k86vgn
title: Occurrence Download

description: A dataset containing 14088 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Anser brachyrhynchus Baillon, 1834)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 14088 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020182-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b2dyjf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Anser brachyrhynchus Baillon, 1834)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020183-250525065834625/datasets/export for details.
DOI: 10.15468/dl.3n4suv
title: Occurrence Download

description: A dataset containing 267 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Potentilla grammopetala Moretti"
 ]
}

 The dataset includes 267 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020185-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3bbbgc
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cipuropsis delicatula (L.B.Sm.) Christenh. & Byng"
 ]
}

 The dataset includes 46 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020186-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15593426
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250604n Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250604n Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.15593427
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250604n Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250604n Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract