cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.hg353/10
title: Nectar Removal Experiment: Repeated Measures- Floral Nectar

description: The purpose of this experiment was to determine if extrafloral and floral nectar production trade off. The endpoint data included in a different spreadsheet was recorded from the last three days of this experiment. Species identifies the species being studied. id is a identifier to distinguish individual plants. Treatment is the experimental treatment applied to the plant (FN=floral nectar removed; EFN+FN=extrafloral and floral nectar removed). Day is the day of the experiment (Calendar day of each Day 1 for each species differs because species had different start times). EFNsugar is the mass of extrafloral nectar sugar removed (mg sucrose equivalent). Temp is the average temperature (C) of the greenhouse from 6pm the previous evening to 6pm on the day of the removal, with temperature being measured every 15 minutes.
DOI: 10.5061/dryad.hg353/2
title: Glasshouse: FN Addition

description: The purpose of this experiment was to check if adding floral nectar could increase seed set in hand pollinated Turnera ulmifolia flowers due to increased resource availability. PlantID is an identifier to distinguish different plants. Treatment can either be "Control" (no floral nectar added) or "FN plus" (10uL added). AvgSeed is the average seed set across all flowers produced by the plant over three days.
DOI: 10.5061/dryad.hg353/3
title: Field Experiment: EFN Reduction (Flowers)

description: The purpose of this experiment was to determine if preventing plants from producing EFN decreased seed set and fruit production or increased florivory. The experiment was conducted at John Pennekamp Coral Reef State Park in Key Largo, Florida. Plant is an identifier to distinguish specific plants. Treatment can be either "EFN glued" (extrafloral nectaries were covered with clear nail polish to stop extrafloral nectar secretion) or "EFN Normal" (clear nail polish was placed near but not on the extrafloral nectaries allowing ambient production). PropFlowHerb is the proportion of flowers herbivorized over seven days. AvgSeed is the average seed set for flowers produced over seven days. Ltotal is the number of leaves on the plant.
DOI: 10.5061/dryad.hg353/4
title: Field Experiment: EFN Reduction (Fruit)

description: This is a 2x2 contingency table reporting the number of fruits produced on florivorized and non-florivorized flowers from the EFN reduction field experiment.
DOI: 10.5061/dryad.hg353/5
title: Field Experiment: EFN Reduction (Leaves)

description: The purpose of this experiment was to determine if preventing plants from producing EFN decreased ant visitation and increased leaf herbivory. The experiment was conducted at John Pennekamp Coral Reef State Park in Key Largo, Florida. Plant is an identifier to distinguish specific plants. Treatment can be either "EFN glued" (extrafloral nectaries were covered with clear nail polish to stop extrafloral nectar secretion) or "EFN normal" (clear nail polish was placed near but not on the extrafloral nectaries allowing ambient production). AntCount is the average number of ants counted on the plants daily for seven days. Ltotal is the number of leaves on the plant. PLHerb is the proportion of leaves herbivorized after seven days of experimental treatment. The remaining columns are species of ants observed on plants over the seven day period, with "1" indicating they were observed at least once and "0" indicating they were not observed on the plant.
DOI: 10.5061/dryad.hg353/6
title: EFN Nectar Stimulation

description: The purpose of this experiment was to confirm that removing extrafloral nectar stimulated further production. It was conducted under glasshouse conditions. Species lists the species of Turnera. Code is an identifier to distinguish specific plants. EFNsugar_exp_per is the mass (mg sucrose equivalent) of extrafloral nectar collected per extrafloral nectary pair in the morning and afternoon from the experimental treatment (nectar removed morning + afternoon). EFNsugar_cont_per is the mass (mg sucrose equivalent) of extrafloral nectar collected per extrafloral nectary pair in the afternoon from the control treatment (nectar removed afternoon only).
DOI: 10.5061/dryad.hg353/7
title: FN Reabsorption

description: The purpose of this experiment was to determine if Turnera flowers reabsorb nectar that is not removed by pollinators. It was conducted under glasshouse conditions. Species identifies the species of Turnera being investigated Hour is the time nectar was removed from the flower. Time is the period of the day when nectar was removed. FNvol is the volume (uL) of floral nectar removed from the flower. FNconc is the concentration (Brix) of floral nectar removed from the flower. FNsugar is the mass of floral nectar (mg sucrose equivalent) removed from the flower. Each measurement is from a different plant and flower.
DOI: 10.5061/dryad.hg353/8
title: Nectar Removal Experiment: Endpoint

description: The purpose of this experiment was to determine if extrafloral and floral nectar production trade off. The experiment was conducted under glasshouse conditions. Values represent endpoint data from a 50 day experiment. Plant ID is an identifier to distinguish individual plants. Species is the species of Turnera. Treatment is the experimental treatment applied to the plant. EFN is a yes/no variable answering if extrafloral nectar was removed for the duration of the experiment. FN is a yes/no variable answering if floral nectar was removed for the duration of the experiment. Leaves is the number of leaves on the plant. Buds is the number of buds on the plants. nFlowers is the average number of flowers produced each day over three days. FNvol is the three-day average floral nectar volume (uL) produced by the plant. FNconc is the three-day average floral nectar concentration (Brix). FNsugar is the three-day average mass of floral nectar sugar (mg sucrose equivalent) produced by the plant. FNvol_per is the three-day average floral nectar volume (uL) per flower. FNsugar_per is the three-day average mass of floral nectar sugar (mg sucrose equivalent) per flower. nEFN is the three-day average number of active EFN pairs per plant. EFNvol is the three-day average extrafloral nectar volume (uL) produced by the plant. EFNconc is the three-day average extrafloral nectar concentration (Brix). EFNsugar is the three-day average mass of extrafloral nectar sugar (mg sucrose equivalent) produced by the plant. EFNvol_per is the three-day average extrafloral nectar volume (uL) per active extrafloral nectary pair. EFNsugar_per is the three-day average extrafloral nectar sugar mass (mg sucrose equivalent) per active extrafloral nectary pair.
DOI: 10.5061/dryad.hg353/9
title: Nectar Removal Experiment: Repeated Measures- Extrafloral nectar

description: The purpose of this experiment was to determine if extrafloral and floral nectar production trade off. The endpoint data included in a different spreadsheet was recorded from the last three days of this experiment. Species identifies the species being studied. id is a identifier to distinguish individual plants. Treatment is the experimental treatment applied to the plant (EFN=extrafloral nectar removed; EFN+FN=extrafloral and floral nectar removed). Day is the day of the experiment (Calendar day of each Day 1 for each species differs because species had different start times). EFNsugar is the mass of extrafloral nectar sugar removed (mg sucrose equivalent). Temp is the average temperature (C) of the greenhouse from 6pm the previous evening to 6pm on the day of the removal, with temperature being measured every 15 minutes.
DOI: 10.5061/dryad.jf0r0/1
title: Maximum Clade Credibility phyologenetic tree of African starlings

description: Maximum Clade Credibility tree for the 47 African starling species calculated from the full posterior probability distribution of the BEAST analysis.
DOI: 10.5061/dryad.jf0r0/2
title: sample of 100 phylogenetic trees of African starlings

description: sample of 100 trees from the posterior distribution of phylogenetic trees of the 47 African starling species from the BEAST analysis
DOI: 10.5061/dryad.jf0r0/3
title: Trait data for African starlings

description: Species average color variables, melanosome, habitat and social system trait data for African starlings. See readme file for description of variables and coding
DOI: 10.5061/dryad.jf2c0/1
title: Flowering data

description: In this file the flowering status and number of flowers for each plant at each surveyed day is shown
DOI: 10.5061/dryad.jf2c0/2
title: Functional group abundances

description: This file contains data of the total number of contacts per pollinator functional group and day
DOI: 10.5061/dryad.jf2c0/3
title: Plant-pollinator surveys

description: This file contains the individual plant-pollinator interactions for each time-lap considered i our study.
DOI: 10.5061/dryad.m6k5k/2
title: Geographic localities for Tegeticula yuccasella more than 10 km apart

description: Subset of localities that are more than 10 km apart
DOI: 10.5061/dryad.m6k5k/3
title: Geographic localities for Tegeticula cassandra

description: Latitude/Longitude coordinates for all localities for T. cassandra
DOI: 10.5061/dryad.m6k5k/4
title: Geographic localities for Tegeticula cassandra more than 10 km apart

description: Localities greater than 10 km apart for T. cassandra
DOI: 10.5061/dryad.m6k5k/5
title: ascThresholder

description: First python script
DOI: 10.5061/dryad.m6k5k/6
title: MaxentMerger

description: Second python script
DOI: 10.5061/dryad.m6k5k/7
title: R_maxentPlots

description: Script to plot from merged files
DOI: 10.5061/dryad.m6k5k/8
title: README

description: Description of files for article
DOI: 10.5061/dryad.n3k7f/1
title: Full dataset

description: The dataset contains all the biological and behavioural data used in the study. The variables are described within the data file.
DOI: 10.5061/dryad.r94k7/1
title: Fasta file of COI sequence from all 24 samples and one reference assembly

description: This fast file lists all COI sequences from all 24 samples and one reference assembly used in this work to confirm the species to be Parasteatoda tepidariorum.
DOI: 10.5061/dryad.r94k7/2
title: Fasta file of 18S rDNA sequences from all 24 samples and one reference assembly used in this work

description: This fast file lists all COI sequences from all 24 samples and one reference assembly used in this work to confirm the species to be Parasteatoda tepidariorum.
DOI: 10.5061/dryad.v2k7s/2
title: RAW subject data
DOI: 10.5061/dryad.14q5g/1
title: Microsatellite data of Pseudocheirus occidentalis in Busselton, Western Australia

description: This file contains microsatellite scores of 145 adult western ringtail possums in Busselton, Western Australia. Genetic samples were collected from 2010 to 2013. Allele scores for 12 microsatellite markers are given in a basic table format and also in  FSTAT input file format. Please refer to the published article for more information on the study blocks and microsatellite markers used.
DOI: 10.5061/dryad.168pg/1
title: Yellow Nutsedge Culm Density, Yellow Nutsedge Tuber Density, and Percent Native Cover in Disturbed and Undisturbed Plots in 1997, 2002, and 2008 on St. Catherine's Island, GA

description: Field data was collected in 1997, 2002, and 2008 for two study locations on St. Catherine's Island, Georgia. At each study site in 1997, (North Beach (NB) and McQueen's Inlet (MQ)), a 0.2 ha area was surveyed for hog (Sus scrofa) soil disturbances. These disturbances were designated as ‘disturbed plots’ (Exp). Paired ‘undisturbed plots’ (Ctr) were established adjacent to the 'disturbed plots'. Within these paired plots, we randomly subsampled the following variables using 0.01 m2 quadrats: yellow nutsedge (Cyperys esculentus) culm density, yellow nutsedge tuber density (2002 and 2008 only), and percent live cover of native species. Subsample number varied with size of disturbance, and data were averaged resulting in one value per disturbance. Additional paired plots were added in 2008 to outline new wild hog disturbances.
DOI: 10.5061/dryad.168pg/2
title: Yellow Nutsedge Density Category and Hog Disturbance Events in Disturbed and Undisturbed Plots (1997-2009) on McQueens Inlet, St. Catherine's GA

description: Yellow nutsedge (Cyperus esculentus) culm density was randomly subsampled at McQueen’s Inlet, St. Catherine's Island, GA. In 1997, a 0.1 ha area was surveyed for hog disturbances. Disturbances were designated as 'disturbed' (Exp) plots and were paired with 'undisturbed' plots. These paired plots were randomly subsampled from 1997-2009 for culm density. Culm density categories were assigned using the following classes (number per 0.1 m2): Class 1: 0-2, Class 2: 3-8, and Class 3: &gt;8. Occurrence of a hog disturbance event in the experimental 'disturbed' plot was also noted. No hog disturbances occurred in control 'undisturbed' plots.
DOI: 10.5061/dryad.1d1js/1
title: Data from: Family morph matters

description: Excel table with 5 sheets: i) first sheet contains all raw data needed for apparent survival and encounter probability using parental morph concistency (part 1);  ii) second sheet contains all raw data needed for apparent survival and encounter probability using parental morph combination (part 2); iii) third sheet contains dispersal data of chicks recruiting into the breeding population; iv) fourth sheet contains recruitment data and raw data of intrinsic factors; and, v) fifth sheet contains recruitment data and raw data of extrinsic factors.
DOI: 10.5061/dryad.1d2c6/1
title: AttachmentAssay
DOI: 10.5061/dryad.1k09d/1
title: ShresthaM_etal_reflect_spectra

description: Fly and Bee colour coordinate plus raw reflectance spectra used in this paper
DOI: 10.5061/dryad.1k09d/2
title: ShresthaM_etal.nex

description: Nexus file of phylogenetic tree
DOI: 10.5061/dryad.20t9v/1
title: Gene Ontology data

description: A list of ClueGO terms enriched with candidate genes for latitude, the overlap with terms enriched with candidate genes of Fabian et al. (2012), and the results of GO enrichment using Gowinda.
DOI: 10.5061/dryad.357cr/1
title: 96_Chinese_horse

description: we performed a genome-wide scan on 96 individuals of three Chinese horse breeds (Debao pony, Yili horse and Mongolian horse) using Equine SNP70 BeadChip. And my genome assembly is  Equus caballus EquCab2.0.
DOI: 10.5061/dryad.357cr/2
title: Equine SNP 70 Bead Chip in Chinese horse

description: we performed a genome-wide scan on 96 individuals of three Chinese horse breeds (Debao pony, Yili horse and Mongolian horse) using Equine SNP70 BeadChip. And my genome assembly is  Equus caballus EquCab2.0
DOI: 10.5061/dryad.357cr/3
title: Sample ID and locations for 96_Chinese_horse.xlsx

description: Sample identification, sample locations and population cluster membership for all individuals.
DOI: 10.5061/dryad.440n9/1
title: field_lab_ experiments

description: field and laboratory experiments for "Field survey of beetle distribution pattern", and "Beetle preferences and plant induced responses"
DOI: 10.5061/dryad.440n9/2
title: chemistry

description: Chemistry data including diterpene acids, SPIs and VOCs.
DOI: 10.5061/dryad.51591/1
title: Competition meta-analysis data

description: Data extracted from previous papers on competition between stink bug and heliothine caterpillar species, used in meta-analysis.
DOI: 10.5061/dryad.51591/2
title: Leaving rate competition data

description: Data for experiment measuring leaving rates of stink bugs from caterpillar-damaged and undamaged plants.
DOI: 10.5061/dryad.51591/3
title: Stink bug oviposition preference data

description: Data on stink bug oviposition preference between caterpillar-damaged and undamaged cotton plants.
DOI: 10.5061/dryad.5b270/1
title: Morphological traits of palmate newts with environmental variables of each sampling pond

description: Individual variables: ID: individual number; Sex: F for female and M for male; SVL: snout-to-vent length in cm; HLL: hindlimb length in cm; Environmental variables: x, y: geographical coordinates (Lambert 93); Site: site number; see Table 1 for environmental variables details.
DOI: 10.5061/dryad.62054/1
title: Sphagnum trait data

description: Trait data from 15 species in the bryophyte genus Sphagnum collected in field and laboratory. Descriptions of column headings available in the file bengtsson_etal_2016_traits_meta.csv
DOI: 10.5061/dryad.62054/2
title: Sphagnum phylogenetic tree

description: Best fit phylogenetic tree showing relationships among 41 species of the genus Sphagnum. The tree was summarized from 1000 posterior trees (presented in Johnsson et al. 2015 Evolution, Data DOI: http://dx.doi.org/10.5061/dryad.0p36h/3) using the software treeAnnotator. In our study this tree was pruned to just include the 15 species of interest, using the drop.tip function in the R package ape.
DOI: 10.5061/dryad.73n28/1
title: Supplementary-Tables_S1_S14
DOI: 10.5061/dryad.9fg2r/1
title: Compressed output folder from the Stacks pipeline

description: This file contains the output from stacks and can be used to export genotypes with the "populations" module of the pipeline.
DOI: 10.5061/dryad.9fg2r/2
title: Chloephaga picta genotypes in .vcf format

description: This is a .vcf file containing genotypes for Chloephaga picta at RAD loci. It was generated using the Stacks bioinformatics pipeline.
DOI: 10.5061/dryad.9fg2r/3
title: Chloephaga rubidiceps and Chloephaga poliocephala genotypes in .vcf format

description: This is a .vcf file containing genotypes for Chloephaga rubidiceps and Chloephaga poliocephala at RAD loci. It was generated using the Stacks bioinformatics pipeline.
DOI: 10.5061/dryad.9fg2r/4
title: Chloephaga picta genotypes in genepop format

description: This file contains genotypes for Chloephaga picta at RAD loci in genepop format. It was generated using the Stacks pipeline.
DOI: 10.5061/dryad.c1d09/1
title: Oikos data-Yi
DOI: 10.5061/dryad.cf2q1/1
title: Sperm DNA fragmentation data

description: Total DNA fragmentation index (tDFI) and high DNA stainability (HDS) results obtained by Sperm Chromatin Structure Assay (SCSA).
DOI: 10.5061/dryad.d191r/1
title: Data on the effects of heterospecific pollen receipt

description: Data from analyses presented in Arceo-Gomez and Ashman 2016 "Invasion status and phylogenetic relatedness predict cost of heterospecific pollen receipt: implications for native biodiversity decline", published in Journal of Ecology. The data was collected from published literature on the effects of heterospecific pollen receipt and was used in meta-analyses
DOI: 10.5061/dryad.f862c/35
title: M616E0-normal RBC + WGA

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/36
title: M616E0-Untreated normal RBC

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/37
title: M616E0 RBC + c3d

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/38
title: M616E0 RBC + c4d

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/39
title: M616E0 RBC + IgG

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/40
title: M616E0 RBC + WGA

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/41
title: M616E0 RBC

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/42
title: M616E24-Control RBC+C3d

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/43
title: M616E24-Control RBC +IgG

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.gn4p4/10
title: Clustertree 1.0

description: File package for a command line program for the unreleased phylommand software package. This algorithm clusters sequence sets based on branch length cutoffs from a phylogeny.
DOI: 10.5061/dryad.gn4p4/11
title: Accession numbers and metadata of GenBank Russula

description: A list of sequences of putative Russula species extracted using the bioinformatics program emerencia (http://www.emerencia.org) in July of 2012. Associated metadata including identification, strain number, publication information, host, tissue type, and location is also provided.
DOI: 10.5061/dryad.gn4p4/3
title: Russula mega-phylogeny ultrametric tree

description: Megaphylogeny ultrametricized using a nonparametric rate smoothing method implemented in r8s.
DOI: 10.5061/dryad.gn4p4/4
title: Russula multigene alignment

description: Multigene alignment of sequences from vouchered specimens identified by taxonomic experts for 4 loci (ITS 1-953, LSU 954-1902, rpb1 (intron 1903-2559, exon 2560-3267), and rpb2 3268-4049).
DOI: 10.5061/dryad.gn4p4/5
title: Russula multigene Bayesian tree

description: Bayesian multigene phylogeny inferred in MrBayes version 3.2.2. for 1,000,000 generations with default priors.
DOI: 10.5061/dryad.gn4p4/6
title: Russula multigene ML tree

description: Maximum likelihood reconstruction of mutigene alignment inferred in raxmlGUI 1.2 executing 1000 rapid ML bootstrapped replicates.
DOI: 10.5061/dryad.gn4p4/7
title: Russulaceae BEAST alignment

description: Multigene alignment of GenBank sequences and sequences generated for this study for 4 loci (ITS 1-434, LSU 435-1271, rpb1 (intron 1272-2054, exon 2055-2762), rpb2 3458). Ambiguous site alignments in ITS were excluded using gblocks.
DOI: 10.5061/dryad.gn4p4/8
title: Russulaceae BEAST tree

description: Chronogram of members of Agaricomycetidae and Russulales inferred from three independent runs in BEAST 2 with 50,000,000 generations and a 10% burn-in. Calibrations used mean age estimates of Russulales, Boletales, Agaricales, Agaricomycetidae, and the ancestral node of all three orders from Floudas et al. 2012.
DOI: 10.5061/dryad.gn4p4/9
title: Russulaceae BEAUTi file

description: BEAUTi file used for BEAST runs to infer the chronogram of Russulales. Partitions and models were inferred using PartitionFinder 1.1.1.
DOI: 10.5061/dryad.hg353/11
title: Nectar Removal Experiment: Seed Set

description: The purpose of this experiment was to determine if removing extrafloral or floral nectar decreased seed set under glasshouse conditions. This experiment was conducted on the plants from the nectar removal experiment, after applying the treatment for 50 days. PlantID is an identifier to distinguish between different individuals. Species is the species of Turnera being studied. Treatment is the treatment that each plant was exposed to for 50 days. FN is a yes/no variable answering if floral nectar was removed. EFN is a yes.no variable answering if extrafloral nectar was removed. nSeeds is the average number of seeds produced by hand pollinating seven flowers following the nectar removal experiment. A maximum of one flower was pollinated per day. Leaves is the number of leaves on the plant.
DOI: 10.5061/dryad.js17t/1
title: meller_et_al_Inter-annual variation and long-term trends in proportions of resident individuals in partially migratory birds

description: The annual indices for the seed crops of rowan, spruce and birch, and the species-specific winter and summer abundance indices, log-transformed proportion of residents calculated from the winter and summer abundances, and early-winter (November-December) and previous winter (December-February) mean temperatures.
DOI: 10.5061/dryad.n0hk7/1
title: SNP_dataset_Coenagrion_scitulum
DOI: 10.5061/dryad.n0hk7/2
title: Phenotype_dataset_Coenagrion_scitulum
DOI: 10.5061/dryad.n0hk7/3
title: Single_locus_outlier_detection_LFMM_parallel
DOI: 10.5061/dryad.n0hk7/4
title: Single_locus_outlier_detection_LFMM_thermal
DOI: 10.5061/dryad.n0hk7/5
title: Polygenic_multilocus_outlier_detection_parallel