cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.tw2dj4
title: Occurrence Download

description: A dataset containing 1086 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pycnonotus melanicterus (Gmelin, 1789)"
 ]
}

 The dataset includes 1086 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010564-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xmnhw7
title: Occurrence Download

description: A dataset containing 322 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Saccharum officinarum L."
 ]
}

 The dataset includes 322 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005386-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4tzxpr
title: Occurrence Download

description: A dataset containing 540150 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tercer Inventario Forestal Nacional. Ministerio de Agricultura, Alimentación y Medio Ambiente (España/Spain)"
 ]
}

 The dataset includes 540150 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0363641-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bmgg3m
title: Occurrence Download

description: A dataset containing 138374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aporia crataegi (Linnaeus, 1758)",
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 138374 records from 1043 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059415-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.54yykb
title: Occurrence Download

description: A dataset containing 11706 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sebastes fasciatus Storer, 1854"
 ]
}

 The dataset includes 11706 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032450-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jwlfug
title: Occurrence Download

description: A dataset containing 8121 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leucaena leucocephala (Lam.) de Wit"
 ]
}

 The dataset includes 8121 records from 267 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007693-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h8xcnq
title: Occurrence Download

description: A dataset containing 785 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cardellina pusilla (A.Wilson, 1811)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 785 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007693-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mxef5t
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carineta diardi (Guérin-Méneville, 1829)"
 ]
}

 The dataset includes 103 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281269-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n6tvs5
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arisaema galeatum N.E.Br."
 ]
}

 The dataset includes 24 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011392-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n6uxi0
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aegypius monachus (Linnaeus, 1766)",
 "DatasetKey is RBINS DaRWIN"
 ]
}

 The dataset includes 22 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007693-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4h5jm8
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ranunculus millefoliatus Vahl",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 86 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005381-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xf87xb
title: Occurrence Download

description: A dataset containing 521 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Echinocereus russanthus D.Weniger"
 ]
}

 The dataset includes 521 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159540-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.35r2tc
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is RUS.79_1",
 "TaxonKey is Prunus serotina Ehrh."
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292096-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.frgjqw
title: Occurrence Download

description: A dataset containing 417018 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Geometry POLYGON((-76.5786 -49.99571,-70.86192 -49.99571,-70.86192 -43.41049,-76.5786 -43.41049,-76.5786 -49.99571))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chordata"
 ]
}

 The dataset includes 417018 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011427-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uljhxx
title: Occurrence Download

description: A dataset containing 554888 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Catharus guttatus (Pallas, 1811)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 554888 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007693-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.13082829
title: Additional file 14 of Predicting and clustering plant CLE genes with a new method developed specifically for short amino acid sequences

description: Additional file 14: Table S3. Comparison of E-values for evaluating the grouping of CLE motifs from Goad et al. [7] and from the site-weight based method described in this study.
DOI: 10.6084/m9.figshare.13082829.v1
title: Additional file 14 of Predicting and clustering plant CLE genes with a new method developed specifically for short amino acid sequences

description: Additional file 14: Table S3. Comparison of E-values for evaluating the grouping of CLE motifs from Goad et al. [7] and from the site-weight based method described in this study.
DOI: 10.6084/m9.figshare.13082841.v1
title: Additional file 18 of Predicting and clustering plant CLE genes with a new method developed specifically for short amino acid sequences

description: Additional file 18: Table S7. Number of CLE genes lying above the CLE motif scores of the corresponding quantiles.
DOI: 10.6084/m9.figshare.13082850
title: Additional file 20 of Predicting and clustering plant CLE genes with a new method developed specifically for short amino acid sequences

description: Additional file 20: Table S9. CLE motifs used for finding the optimal amino acid substitution matrix.
DOI: 10.5281/zenodo.10731633
title: Model and emission data for paper 'Combining The Emission Preprocessor HERMES With The Chemical Transport Model TM5-MP'

description: Used model and emission data used in the manuscript 'Combining The Emission Preprocessor HERMES With The Chemical Transport Model TM5-MP'
DOI: 10.5281/zenodo.10731632
title: Model and emission data for paper 'Combining The Emission Preprocessor HERMES With The Chemical Transport Model TM5-MP'

description: Used model and emission data used in the manuscript 'Combining The Emission Preprocessor HERMES With The Chemical Transport Model TM5-MP'
DOI: 10.6084/m9.figshare.23676936
title: CNE sequences - Mollusca

description: Conserved noncoding sequences identified from 14 mollusc genomes using the software CNEfinder.
DOI: 10.6084/m9.figshare.23676936.v4
title: CNE sequences - Mollusca

description: Conserved noncoding sequences identified from 14 mollusc genomes using the software CNEfinder.
DOI: 10.6084/m9.figshare.23676936.v3
title: CNE sequences - Mollusca

description: Conserved noncoding sequences identified from 14 mollusc genomes using the software CNEfinder.
DOI: 10.6084/m9.figshare.13082838.v1
title: Additional file 17 of Predicting and clustering plant CLE genes with a new method developed specifically for short amino acid sequences

description: Additional file 17: Table S6. Top 10 most frequently used CLE motifs in monocots and dicots.
DOI: 10.34740/kaggle/dsv/7737747
title: Github Social Network
DOI: 10.5281/zenodo.10729766
title: Lewy pathology induced molecular dysfunction

description: Probe_Data_Mouse.RDS- The pre-qc data for the mouse GeoMx experiment

Probe_Data_Hu.RDS- The probe data for the Human GeoMx experiment

ACA_Profile.csv- Reference matrix of Anterior Cingulate Area for deconvolution calculation

MOs_Profile.csv- Reference Matrix of Secondary Motor Cortex for deconvolution calculation

Profile_human_allreg.csv_profileMatrix- Human reference matrix for deconvolution claculation

Profile_Matrix_setup_Human- Code for Human Profile Matrix setup

Profile_Matrix_Setup_Mu- Code for Mouse profile matrix setup

Top_genesets_mu/hu- The top differential genesetsets in the mouse/human data

LAMDA_Signature_Mouse- Data for the LAMDA signature for Mouse. (Differentially epxressed genes between Aggregate bearing and Non-aggregate bearing neurons). Avilable as CSV and RDS. Use this to explore the LAMDA signature for your genes of interest

LAMDA_Signature_Human-Data for the LAMDA signature for Human. (Differentially epxressed genes between Aggregate bearing and Non-aggregate bearing neurons). Avilable as CSV and RDS. Use this to explore the LAMDA signature for your genes of interest

Anchors-3mon: Anchors for cosmx cell typing

asstats_3mon: stats for cosmx cell typing

cohort_3mon: cohort info for cosmx cell typing

pSyn_positive_cells: CSV identifying all psyn postive cells

seurat_object_3mon: Seurat object contianing all the CosMx data (Note: CosMx method does not use Fastq files)
DOI: 10.6084/m9.figshare.11770674.v2
title: Seroprevalence of human brucellosis and molecular characteristics of <i>Brucella</i> strains in Inner Mongolia Autonomous region of China, from 2012 to 2016

description: In the present study, a total of 1102304 serum samples were collected to detected human brucellosis between the years 2012 and 2016 in Inner Mongolia. Overall, an average of 3.79% anti-Brucella positive in Inner Mongolia was presented but the range of positive rates were among 0.90 to 7.07% in 12 regions. Seroprevalence of human brucellosis increased gradually from 2012 to 2016. However, the incidence rate of human brucellosis showed a declining trend. One hundred and seven Brucella strains were isolated and identified as <i>B. melitensis</i> species, and <i>B. melitensis</i> biovar 3 was the predominant biovar. MLVA-11 genotypes 116 was predominant and had crucial epidemiology to the human population. All 107 strains tested were sorted into 75 MLVA-16 genotypes, with 54 single genotypes representing unique isolates. This result revealed that these Brucellosis cases had epidemiologically unrelated and sporadic characteristics. The remaining 21 shared genotypes among two to four strains, confirming the occurrence of cross-infection and multiple outbreaks. Extensive genotype-events were observed between strains from this study and Kazakhstan, Mongolia, and Turkey, these countries were key members of the grassland silk road. Long-time trade in small ruminants (sheep) in these countries has possibly promoted the spread of <i>Brucella spp</i>. in these regions.
DOI: 10.5281/zenodo.10729767
title: Lewy pathology induced molecular dysfunction

description: Probe_Data_Mouse.RDS- The pre-qc data for the mouse GeoMx experiment

Probe_Data_Hu.RDS- The probe data for the Human GeoMx experiment

ACA_Profile.csv- Reference matrix of Anterior Cingulate Area for deconvolution calculation

MOs_Profile.csv- Reference Matrix of Secondary Motor Cortex for deconvolution calculation

Profile_human_allreg.csv_profileMatrix- Human reference matrix for deconvolution claculation

Profile_Matrix_setup_Human- Code for Human Profile Matrix setup

Profile_Matrix_Setup_Mu- Code for Mouse profile matrix setup

Top_genesets_mu/hu- The top differential genesetsets in the mouse/human data

LAMDA_Signature_Mouse- Data for the LAMDA signature for Mouse. (Differentially epxressed genes between Aggregate bearing and Non-aggregate bearing neurons). Avilable as CSV and RDS. Use this to explore the LAMDA signature for your genes of interest

LAMDA_Signature_Human-Data for the LAMDA signature for Human. (Differentially epxressed genes between Aggregate bearing and Non-aggregate bearing neurons). Avilable as CSV and RDS. Use this to explore the LAMDA signature for your genes of interest

Anchors-3mon: Anchors for cosmx cell typing

asstats_3mon: stats for cosmx cell typing

cohort_3mon: cohort info for cosmx cell typing

pSyn_positive_cells: CSV identifying all psyn postive cells

seurat_object_3mon: Seurat object contianing all the CosMx data (Note: CosMx method does not use Fastq files)
DOI: 10.6084/m9.figshare.11770695
title: Senescence-associated genes and non-coding RNAs function in pancreatic cancer progression

description: Pancreatic cancer is a major cause of mortality with a poor diagnosis and prognosis that most often occurs in elderly patients. Few studies, however, focus on the interplay of age and pancreatic cancer at the transcriptional level. Here we evaluated the possible roles of age-dependent, differentially expressed genes (DEGs) in pancreatic cancer. These DEGs were used to construct a correlation network and clustered in six gene modules, among which two modules were highly correlated with patients’ survival time. Integrating different datasets, including ATAC-Seq and ChIP-Seq, we performed multi-parallel analyses and identified eight age-dependent protein coding genes and two non-coding RNAs as potential candidates. These candidates, together with KLF5, a potent functional transcription factor in pancreatic cancer, are likely to be key elements linking cellular senescence and pancreatic cancer, providing insights on the balance between them, as well as on diagnosis and subsequent prognosis of pancreatic cancer.
DOI: 10.6084/m9.figshare.11770695.v1
title: Senescence-associated genes and non-coding RNAs function in pancreatic cancer progression

description: Pancreatic cancer is a major cause of mortality with a poor diagnosis and prognosis that most often occurs in elderly patients. Few studies, however, focus on the interplay of age and pancreatic cancer at the transcriptional level. Here we evaluated the possible roles of age-dependent, differentially expressed genes (DEGs) in pancreatic cancer. These DEGs were used to construct a correlation network and clustered in six gene modules, among which two modules were highly correlated with patients’ survival time. Integrating different datasets, including ATAC-Seq and ChIP-Seq, we performed multi-parallel analyses and identified eight age-dependent protein coding genes and two non-coding RNAs as potential candidates. These candidates, together with KLF5, a potent functional transcription factor in pancreatic cancer, are likely to be key elements linking cellular senescence and pancreatic cancer, providing insights on the balance between them, as well as on diagnosis and subsequent prognosis of pancreatic cancer.
DOI: 10.6084/m9.figshare.13083309.v1
title: Additional file 6 of Comparative transcriptome analysis reveals that PCK1 is a potential gene affecting IMF deposition in buffalo

description: Additional file 6: Table S5. Functional enrichment of differentially expressed genes in the longissimus dorsi muscle-specific mRNAs.
DOI: 10.6084/m9.figshare.20424028
title: Additional file 1 of Multiple roles of apolipoprotein B mRNA editing enzyme catalytic subunit 3B (APOBEC3B) in human tumors: a pan-cancer analysis

description: Additional file 1. Clinical prognostic significance of DNA methylation of APOBEC3B.
DOI: 10.6084/m9.figshare.20424041.v1
title: Additional file 2 of Sleep duration, genetic susceptibility, and Alzheimer's disease: a longitudinal UK Biobank-based study

description: Additional file 2.
DOI: 10.48597/scs5-bqxz
title: Measurement of Ozone at Nordmoen

description: Measurement of Ozone at Nordmoen
DOI: 10.48597/ta3q-q5k6
title: Measurement of Ozone at Voss

description: Measurement of Ozone at Voss
DOI: 10.48597/tyys-ucxf
title: Measurement of Ozone at Jeløya

description: Measurement of Ozone at Jeløya
DOI: 10.48597/u9pf-ddwq
title: Measurement of Ozone at Jeløya

description: Measurement of Ozone at Jeløya
DOI: 10.48597/va82-ftfz
title: Measurement of Ozone at Jeløya

description: Measurement of Ozone at Jeløya
DOI: 10.48597/vzph-fy9b
title: Measurement of Ozone at Jeløya

description: Measurement of Ozone at Jeløya
DOI: 10.48597/we7w-sbeu
title: Measurement of Ozone at Nordmoen

description: Measurement of Ozone at Nordmoen
DOI: 10.48597/wf8t-g4kv
title: Measurement of Ozone at Voss

description: Measurement of Ozone at Voss
DOI: 10.48597/wn2e-27q3
title: Measurement of Ozone at Jeløya

description: Measurement of Ozone at Jeløya
DOI: 10.48597/yweu-fc4u
title: Measurement of Ozone at Jeløya

description: Measurement of Ozone at Jeløya
DOI: 10.48597/z2kq-kgt9
title: Measurement of Ozone at Jeløya

description: Measurement of Ozone at Jeløya
DOI: 10.6084/m9.figshare.20424077.v1
title: Additional file 1 of Involvement of MdWRKY40 in the defense of mycorrhizal apple against fusarium solani

description: Additional file 1: Supplementary Table S1. Sequencing data quality statistics.
DOI: 10.48597/2ag9-7g7m
title: Measurement of Aerosol_absorption_coefficient at Bondville

description: Measurement of Aerosol_absorption_coefficient at Bondville
DOI: 10.48597/3ewa-3y4s
title: Measurement of Sulphate_corrected at Reykjavik

description: Measurement of Sulphate_corrected at Reykjavik
DOI: 10.48597/3sb4-z7y6
title: Measurement of Inorganics in precipitation at Reykjavik

description: Measurement of Inorganics in precipitation at Reykjavik
DOI: 10.48597/3yah-q9zw
title: Measurement of Fluorene at Alert

description: Measurement of Fluorene at Alert
DOI: 10.48597/42es-bez5
title: Measurement of Attenuation_coefficient, bypass_fraction, equivalent_black_carbon, flow_rate, reference_beam_signal, reference_zero_signal, sensing_beam_signal and sensing_zero_signal at Zeppelin mountain (Ny-Ålesund)

description: Measurement of Attenuation_coefficient, bypass_fraction, equivalent_black_carbon, flow_rate, reference_beam_signal, reference_zero_signal, sensing_beam_signal and sensing_zero_signal at Zeppelin mountain (Ny-Ålesund)
DOI: 10.48597/46d9-mnyv
title: Measurement of Aerosol_absorption_coefficient at Alert

description: Measurement of Aerosol_absorption_coefficient at Alert
DOI: 10.48597/48pm-vs9c
title: Measurement of Bypass_fraction at Ispra

description: Measurement of Bypass_fraction at Ispra
DOI: 10.6084/m9.figshare.20424080
title: Additional file 2 of Involvement of MdWRKY40 in the defense of mycorrhizal apple against fusarium solani

description: Additional file 2: Supplementary Table S2. List of primers used in this research.
DOI: 10.48597/4t8a-w4eu
title: Measurement of Aerosol_absorption_coefficient at Trinidad Head

description: Measurement of Aerosol_absorption_coefficient at Trinidad Head
DOI: 10.6084/m9.figshare.25325713
title: EMLP individual and population information

description: Population and individual plant data based on the passport information sourced from the German genebank (IPK-Gatersleben).
DOI: 10.6084/m9.figshare.25325713.v1
title: EMLP individual and population information

description: Population and individual plant data based on the passport information sourced from the German genebank (IPK-Gatersleben).
DOI: 10.48597/4x65-7b9g
title: Measurement of Aerosol_absorption_coefficient at Trinidad Head

description: Measurement of Aerosol_absorption_coefficient at Trinidad Head
DOI: 10.48597/57dm-3yyg
title: Measurement of Aerosol_absorption_coefficient at Barrow

description: Measurement of Aerosol_absorption_coefficient at Barrow
DOI: 10.6084/m9.figshare.20424080.v1
title: Additional file 2 of Involvement of MdWRKY40 in the defense of mycorrhizal apple against fusarium solani

description: Additional file 2: Supplementary Table S2. List of primers used in this research.
DOI: 10.48597/5nf9-htng
title: Measurement of Aerosol_absorption_coefficient at Bondville

description: Measurement of Aerosol_absorption_coefficient at Bondville
DOI: 10.48597/5s22-r9c3
title: Measurement of Aerosol_absorption_coefficient at Alert

description: Measurement of Aerosol_absorption_coefficient at Alert
DOI: 10.48597/5sxa-fzzb
title: Measurement of Attenuation_coefficient, bypass_fraction, equivalent_black_carbon, flow_rate, reference_beam_signal, reference_zero_signal, sensing_beam_signal and sensing_zero_signal at Ispra

description: Measurement of Attenuation_coefficient, bypass_fraction, equivalent_black_carbon, flow_rate, reference_beam_signal, reference_zero_signal, sensing_beam_signal and sensing_zero_signal at Ispra
DOI: 10.48597/5vxd-dm5t
title: Measurement of Inorganics in precipitation at Reykjavik

description: Measurement of Inorganics in precipitation at Reykjavik
DOI: 10.48597/6d8m-yhxf
title: Measurement of Aerosol_absorption_coefficient at Mauna Loa

description: Measurement of Aerosol_absorption_coefficient at Mauna Loa
DOI: 10.48597/6pc3-cjr4
title: Measurement of Attenuation_coefficient at Ispra

description: Measurement of Attenuation_coefficient at Ispra