cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7823619
title: Ocean currents magnify upwelling and deliver nutritional subsidies to reef-building corals during El Niño heatwaves

description: This is the data and code associated with the manuscript: Fox et al. Ocean currents magnify upwelling and deliver nutritional subsidies to reef-building corals during El Niño heatwaves. Science Advances June 2023
DOI: 10.6084/m9.figshare.23514024
title: Fecal metabolites

description: Untargeted metabolic analysis using human fecal samples
DOI: 10.6084/m9.figshare.23514024.v1
title: Fecal metabolites

description: Untargeted metabolic analysis using human fecal samples
DOI: 10.5281/zenodo.8024426
title: ARCH-COMP 2023 Category Report: Falsification - Validation

description: ARCH-COMP 2023 is an international competition on verifying continuous and hybrid systems. This archive refers to the falsification category of this competition. It contains the traces submitted for validation and the corresponding validation results.
DOI: 10.5281/zenodo.8024425
title: ARCH-COMP 2023 Category Report: Falsification - Validation

description: ARCH-COMP 2023 is an international competition on verifying continuous and hybrid systems. This archive refers to the falsification category of this competition. It contains the traces submitted for validation and the corresponding validation results.
DOI: 10.34740/kaggle/ds/2209798
title: Persian Answer Selection Datasets
DOI: 10.5517/ccdc.csd.cc2dmmth
title: CCDC 2223407: Experimental Crystal Structure Determination

description: Related Article: Lan Jiang, Ruibing Lv, Jinxing Wang, Siwei Song, Yongdong Chen, Xingbo Ge, Kangcai Wang, Qinghua Zhang|2023|FirePhysChem|3|98|doi:10.1016/j.fpc.2023.02.004
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dmmvj
title: CCDC 2223408: Experimental Crystal Structure Determination

description: Related Article: Lan Jiang, Ruibing Lv, Jinxing Wang, Siwei Song, Yongdong Chen, Xingbo Ge, Kangcai Wang, Qinghua Zhang|2023|FirePhysChem|3|98|doi:10.1016/j.fpc.2023.02.004
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dmmwk
title: CCDC 2223409: Experimental Crystal Structure Determination

description: Related Article: Lan Jiang, Ruibing Lv, Jinxing Wang, Siwei Song, Yongdong Chen, Xingbo Ge, Kangcai Wang, Qinghua Zhang|2023|FirePhysChem|3|98|doi:10.1016/j.fpc.2023.02.004
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dmmxl
title: CCDC 2223410: Experimental Crystal Structure Determination

description: Related Article: Lan Jiang, Ruibing Lv, Jinxing Wang, Siwei Song, Yongdong Chen, Xingbo Ge, Kangcai Wang, Qinghua Zhang|2023|FirePhysChem|3|98|doi:10.1016/j.fpc.2023.02.004
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.11583/dtu.22740071
title: Supporting WRF dataset for the article "Simulating wake losses of the Danish Energy Island wind farm cluster"

description: This dataset contains model outputs and necessary files to replicate the simulations from the article "Simulating wake losses of the Danish Energy Island wind farm cluster" (https://doi.org/10.1088/1742-6596/2505/1/012015) <br> The modelling uses the Weather research and forecasting (WRF; https://github.com/wrf-model/WRF ) model using a wind farm parametrisation (EWP, https://doi.org/10.5194/gmd-8-3715-2015 ). Two modelling approaches are used: an ideal isolated case (one specific wind direction and wind speed) and real cases (two grid spacing) that cover the simulation of a full year (2016). The simulation aimed to compare methodologies for modelling very large offshore clusters and calculate their Anual Energy Production. <br> <strong>Input files</strong> To perform the simulations with WRF, input files are attached as zip files for real (<strong>modelfiles_real_*km</strong>) and ideal (<strong>modelfiles_ideal_1km</strong>) simulations. This zip file contains the <strong>namelist.input*, namelist.wps</strong>, and<strong> input_souding </strong>necessary to run the models on both modes and for the specified grid spacing (1 or 2 kilometres). For the real simulations, boundary conditions (ERA5 reanalysis) are needed and can be downloaded from ftp://ftp.ecmwf.int/pub/wrf. For ideal, the <strong>input_soundig</strong> file is the only requirement. <br> The files <strong>EnergyO.ideal</strong>, <strong>EnergyO.real</strong>, and <strong>GEN-15-236.turbine</strong> are provided to simulate the wind farms. The cluster comprises ten wind farms with 1 GW capacity. Each wind farm is simulated with 67 15 MW wind turbines. <strong>EnergyO.ideal</strong>, <strong>EnergyO.real</strong> are the locations for the ideal and real cases, respectively, and the thrust and power curves are given in <strong>GEN-15-236.turbine.</strong> <br> <strong>Model outputs files</strong> <br> The model's output is in NetCDF format (<strong>*.nc</strong>) and contains the wind speed ("<strong>WS</strong>") field and the power production (''<strong>POWER</strong>") generated by the wind farms. Quantities are expressed as temporal averages over 1 hour and 1 year (2016) for the ideal and real cases, respectively. <br> <br> <br>
DOI: 10.11583/dtu.22740071.v1
title: Supporting WRF dataset for the article "Simulating wake losses of the Danish Energy Island wind farm cluster"

description: This dataset contains model outputs and necessary files to replicate the simulations from the article "Simulating wake losses of the Danish Energy Island wind farm cluster" (https://doi.org/10.1088/1742-6596/2505/1/012015) <br> The modelling uses the Weather research and forecasting (WRF; https://github.com/wrf-model/WRF ) model using a wind farm parametrisation (EWP, https://doi.org/10.5194/gmd-8-3715-2015 ). Two modelling approaches are used: an ideal isolated case (one specific wind direction and wind speed) and real cases (two grid spacing) that cover the simulation of a full year (2016). The simulation aimed to compare methodologies for modelling very large offshore clusters and calculate their Anual Energy Production. <br> <strong>Input files</strong> To perform the simulations with WRF, input files are attached as zip files for real (<strong>modelfiles_real_*km</strong>) and ideal (<strong>modelfiles_ideal_1km</strong>) simulations. This zip file contains the <strong>namelist.input*, namelist.wps</strong>, and<strong> input_souding </strong>necessary to run the models on both modes and for the specified grid spacing (1 or 2 kilometres). For the real simulations, boundary conditions (ERA5 reanalysis) are needed and can be downloaded from ftp://ftp.ecmwf.int/pub/wrf. For ideal, the <strong>input_soundig</strong> file is the only requirement. <br> The files <strong>EnergyO.ideal</strong>, <strong>EnergyO.real</strong>, and <strong>GEN-15-236.turbine</strong> are provided to simulate the wind farms. The cluster comprises ten wind farms with 1 GW capacity. Each wind farm is simulated with 67 15 MW wind turbines. <strong>EnergyO.ideal</strong>, <strong>EnergyO.real</strong> are the locations for the ideal and real cases, respectively, and the thrust and power curves are given in <strong>GEN-15-236.turbine.</strong> <br> <strong>Model outputs files</strong> <br> The model's output is in NetCDF format (<strong>*.nc</strong>) and contains the wind speed ("<strong>WS</strong>") field and the power production (''<strong>POWER</strong>") generated by the wind farms. Quantities are expressed as temporal averages over 1 hour and 1 year (2016) for the ideal and real cases, respectively. <br> <br> <br>
DOI: 10.6084/m9.figshare.23512863.v1
title: Data.xlsx

description: The seismic catalog and regional slip rate are used in this paper
DOI: 10.5281/zenodo.7851313
title: Nutritional Value Formation of Silkworm Pupa at Different Growth Stages: Analysis from Multi-omics Perspective

description: Silkworm pupa (Bombyx mori) is affinal drug and diet in China, which is rich in protein and human essential amino acids. However, it is unclear how the internal nutritional composition changes and the antioxidant situation throughout the transformation of a silkworm pupa into a silkworm moth. In this study, we investigated the samples from four growth stages during silkworm pupal emergence by integrating proteomics and metabolomics. The results of the systematic bioinformatics study revealed that the growth of silkworm pupae considerably altered the ribosome-related genetic expression, cuticle development, and folate metabolism. The partial redox-active amino acid levels and the level of peroxiredoxin 1 expression were consistent with the fact that the total antioxidant capacity was higher in 7- and 10-day-old silkworm pupae. As compared to silkworm pupae, the amounts of fatty acids rose while those of amino acids, peptides, and organic acids dropped. This research also discovered that the altered protein profiles of silkworm pupae were controlled by the differential expression of mTOR signaling proteins (V-ATPase, S6, eIF4E) and ubiquitin mediate proteins (RP-L40e, UBE2L3, UBE2N, SKP1, ELOC). This study provided a new scientific foundation for the development and utilization of edible insect silkworm pupa functional food products.
DOI: 10.5281/zenodo.7851312
title: Nutritional Value Formation of Silkworm Pupa at Different Growth Stages: Analysis from Multi-omics Perspective

description: Silkworm pupa (Bombyx mori) is affinal drug and diet in China, which is rich in protein and human essential amino acids. However, it is unclear how the internal nutritional composition changes and the antioxidant situation throughout the transformation of a silkworm pupa into a silkworm moth. In this study, we investigated the samples from four growth stages during silkworm pupal emergence by integrating proteomics and metabolomics. The results of the systematic bioinformatics study revealed that the growth of silkworm pupae considerably altered the ribosome-related genetic expression, cuticle development, and folate metabolism. The partial redox-active amino acid levels and the level of peroxiredoxin 1 expression were consistent with the fact that the total antioxidant capacity was higher in 7- and 10-day-old silkworm pupae. As compared to silkworm pupae, the amounts of fatty acids rose while those of amino acids, peptides, and organic acids dropped. This research also discovered that the altered protein profiles of silkworm pupae were controlled by the differential expression of mTOR signaling proteins (V-ATPase, S6, eIF4E) and ubiquitin mediate proteins (RP-L40e, UBE2L3, UBE2N, SKP1, ELOC). This study provided a new scientific foundation for the development and utilization of edible insect silkworm pupa functional food products.
DOI: 10.6084/m9.figshare.22779953.v1
title: Cell type-specific mapping of ion distribution in <i>Arabidopsis thaliana</i> roots

description: The file contains all data supporting the manuscript Cell type-specific mapping of ion distribution in <i>Arabidopsis thaliana</i> roots.
DOI: 10.6084/m9.figshare.22779953
title: Cell type-specific mapping of ion distribution in <i>Arabidopsis thaliana</i> roots

description: The file contains all data supporting the manuscript Cell type-specific mapping of ion distribution in <i>Arabidopsis thaliana</i> roots.
DOI: 10.6084/m9.figshare.23512863
title: All-Data.xlsx

description: The seismic catalog and regional slip rate are used in this paper
DOI: 10.6084/m9.figshare.23512863.v3
title: All-Data.xlsx

description: The seismic catalog and regional slip rate are used in this paper
DOI: 10.6084/m9.figshare.23512863.v2
title: All-Data.xlsx

description: The seismic catalog and regional slip rate are used in this paper
DOI: 10.6084/m9.figshare.22598362.v1
title: Supplementary information for A Single-Domain Green Fluorescent Protein Catenane

description: We would like to remove the Figshare item since we do not have extra dataset to upload except supplementary information, but do not know where to remove it. Could you please help us remove the figshare item, many thanks!
DOI: 10.6084/m9.figshare.22587022.v1
title: hapln1a+ cells guide coronary growth during heart morphogenesis and regeneration

description: Source data for all quantification of statistics in the MS.
DOI: 10.6084/m9.figshare.22598362
title: Supplementary information for A Single-Domain Green Fluorescent Protein Catenane

description: We would like to remove the Figshare item since we do not have extra dataset to upload except supplementary information, but do not know where to remove it. Could you please help us remove the figshare item, many thanks!
DOI: 10.6084/m9.figshare.22587022
title: hapln1a+ cells guide coronary growth during heart morphogenesis and regeneration

description: Source data for all quantification of statistics in the MS.
DOI: 10.17608/k6.auckland.21397377.v4
title: NeurIPS 2022 Datasets

description: This paper presents a comprehensive and quality collection of functional human brain network data for potential research in the intersection of neuroscience, machine learning, and graph analytics. <br> Anatomical and functional MRI images of the brain have been used to understand the functional connectivity of the human brain and are particularly important in identifying underlying neurodegenerative conditions such as Alzheimer's, Parkinson's, and Autism. Recently, the study of the brain in the form of brain networks using machine learning and graph analytics has become increasingly popular, especially to predict the early onset of these conditions. A brain network, represented as a graph, retains richer structural and positional information that traditional examination methods are unable to capture. However, the lack of brain network data transformed from functional MRI images prevents researchers from data-driven explorations. One of the main difficulties lies in the complicated domain-specific preprocessing steps and the exhaustive computation required to convert data from MRI images into brain networks. We bridge this gap by collecting a large amount of available MRI images from existing studies, working with domain experts to make sensible design choices, and preprocessing the MRI images to produce a collection of brain network datasets. The datasets originate from 5 different sources, cover 3 neurodegenerative conditions, and consist of a total of 2,642 subjects. <br> We test our graph datasets on 5 machine learning models commonly used in neuroscience and on a recent graph-based analysis model to validate the data quality and to provide domain baselines. To lower the barrier to entry and promote the research in this interdisciplinary field, we release our complete preprocessing details, codes, and brain network data. <br> <br> To stay informed about the new updates of the datasets, kindly provide us with your email address: https://forms.gle/KGAajR6LEysXWKvKA
DOI: 10.6084/m9.figshare.22794791
title: Distributed embodiment of the Persian term <em>dagigan </em>in forward gestures

description: Distributed embodiment of the Persian term "dagigan" in gestures
DOI: 10.6084/m9.figshare.22794791.v1
title: Distributed embodiment of the Persian term <em>dagigan </em>in forward gestures

description: Distributed embodiment of the Persian term "dagigan" in gestures
DOI: 10.5281/zenodo.8036463
title: ENDGAME - Laboratory Experiment 2022-11-29 Exp. 002 - Part 5 - High Speed Camera data

description: Preliminary test with high speed camera and Schlieren shadow photography. Images of the rise of some coalescing air bubbles in a 2D setup obtained using 2 parallel glass sheets (3 mm thickness) separated by rubber seals and filled with distilled water. The gap between the two parallel sheets is 3 mm. Air was injected manually into the 2D setup through a straw (4 mm diam) at high speed. Frame rate of the high speed camera is 250 fps. The spherical mirror used for the Schlieren setup was 75 mm wide with a 750 mm focal length.
DOI: 10.5281/zenodo.8036462
title: ENDGAME - Laboratory Experiment 2022-11-29 Exp. 002 - Part 5 - High Speed Camera data

description: Preliminary test with high speed camera and Schlieren shadow photography. Images of the rise of some coalescing air bubbles in a 2D setup obtained using 2 parallel glass sheets (3 mm thickness) separated by rubber seals and filled with distilled water. The gap between the two parallel sheets is 3 mm. Air was injected manually into the 2D setup through a straw (4 mm diam) at high speed. Frame rate of the high speed camera is 250 fps. The spherical mirror used for the Schlieren setup was 75 mm wide with a 750 mm focal length.
DOI: 10.5281/zenodo.7680568
title: Polioviren im Abwasser - PIA

description: Derzeit wird in Deutschland zur Überwachung der Poliofreiheit eine syndromische Surveillance hospitalisierter Patienten mit aseptischer Meningitis/Enzephalitis und akuter schlaffer Paresen durchgeführt (Enterovirus-Surveillance, EVSurv). In der Endphase der Polioeradikation könnte jedoch zusätzlich auch die virologische Untersuchung von Abwasserproben als Frühwarnsystem eine größere Rolle spielen. Um auf die perspektivischen Veränderungen der WHO-Anforderungen adäquat reagieren zu können, wurde am NRZ PE im Rahmen eines laufenden Pilotprojekts eine Methode zum sicheren Nachweis von Polioviren aus Abwassserproben etabliert. Diese Machbarkeitsstudie erfolgt in enger Kooperation mit dem Umweltbundesamt (UBA). Seit Mai 2021 werden wöchentlich Abwasserproben aus mehreren Klärwerken einer deutschen Großstadt auf Polioviren untersucht. Dabei liefert die Anzucht auf verschiedenen Zelllinien (RD, L20B) mit anschließender Sequenzierung der proteinkodierenden VP1 Region die besten Ergebnisse.
DOI: 10.5281/zenodo.7680569
title: Polioviren im Abwasser - PIA

description: Derzeit wird in Deutschland zur Überwachung der Poliofreiheit eine syndromische Surveillance hospitalisierter Patienten mit aseptischer Meningitis/Enzephalitis und akuter schlaffer Paresen durchgeführt (Enterovirus-Surveillance, EVSurv). In der Endphase der Polioeradikation könnte jedoch zusätzlich auch die virologische Untersuchung von Abwasserproben als Frühwarnsystem eine größere Rolle spielen. Um auf die perspektivischen Veränderungen der WHO-Anforderungen adäquat reagieren zu können, wurde am NRZ PE im Rahmen eines laufenden Pilotprojekts eine Methode zum sicheren Nachweis von Polioviren aus Abwassserproben etabliert. Diese Machbarkeitsstudie erfolgt in enger Kooperation mit dem Umweltbundesamt (UBA). Seit Mai 2021 werden wöchentlich Abwasserproben aus mehreren Klärwerken einer deutschen Großstadt auf Polioviren untersucht. Dabei liefert die Anzucht auf verschiedenen Zelllinien (RD, L20B) mit anschließender Sequenzierung der proteinkodierenden VP1 Region die besten Ergebnisse.
DOI: 10.5281/zenodo.8036435
title: Polioviren im Abwasser - PIA

description: Derzeit wird in Deutschland zur Überwachung der Poliofreiheit eine syndromische Surveillance hospitalisierter Patienten mit aseptischer Meningitis/Enzephalitis und akuter schlaffer Paresen durchgeführt (Enterovirus-Surveillance, EVSurv). In der Endphase der Polioeradikation könnte jedoch zusätzlich auch die virologische Untersuchung von Abwasserproben als Frühwarnsystem eine größere Rolle spielen. Um auf die perspektivischen Veränderungen der WHO-Anforderungen adäquat reagieren zu können, wurde am NRZ PE im Rahmen eines laufenden Pilotprojekts eine Methode zum sicheren Nachweis von Polioviren aus Abwassserproben etabliert. Diese Machbarkeitsstudie erfolgt in enger Kooperation mit dem Umweltbundesamt (UBA). Seit Mai 2021 werden wöchentlich Abwasserproben aus mehreren Klärwerken einer deutschen Großstadt auf Polioviren untersucht. Dabei liefert die Anzucht auf verschiedenen Zelllinien (RD, L20B) mit anschließender Sequenzierung der proteinkodierenden VP1 Region die besten Ergebnisse.
DOI: 10.5281/zenodo.8036479
title: ENDGAME - Laboratory Experiment 2022-11-29 Exp. 002 - Part 6 - High Speed Camera data

description: Preliminary test with high speed camera and Schlieren shadow photography. Images of the rise of some coalescing air bubbles in a 2D setup obtained using 2 parallel glass sheets (3 mm thickness) separated by rubber seals and filled with distilled water. The gap between the two parallel sheets is 3 mm. Air was injected manually into the 2D setup through a straw (4 mm diam) at high speed. Frame rate of the high speed camera is 250 fps. The spherical mirror used for the Schlieren setup was 75 mm wide with a 750 mm focal length.
DOI: 10.5281/zenodo.8036478
title: ENDGAME - Laboratory Experiment 2022-11-29 Exp. 002 - Part 6 - High Speed Camera data

description: Preliminary test with high speed camera and Schlieren shadow photography. Images of the rise of some coalescing air bubbles in a 2D setup obtained using 2 parallel glass sheets (3 mm thickness) separated by rubber seals and filled with distilled water. The gap between the two parallel sheets is 3 mm. Air was injected manually into the 2D setup through a straw (4 mm diam) at high speed. Frame rate of the high speed camera is 250 fps. The spherical mirror used for the Schlieren setup was 75 mm wide with a 750 mm focal length.
DOI: 10.5281/zenodo.8036496
title: ENDGAME - Laboratory Experiment 2022-11-29 Exp. 002 - Part 7 - High Speed Camera data

description: Preliminary test with high speed camera and Schlieren shadow photography. Images of the rise of some coalescing air bubbles in a 2D setup obtained using 2 parallel glass sheets (3 mm thickness) separated by rubber seals and filled with distilled water. The gap between the two parallel sheets is 3 mm. Air was injected manually into the 2D setup through a straw (4 mm diam) at high speed. Frame rate of the high speed camera is 250 fps. The spherical mirror used for the Schlieren setup was 75 mm wide with a 750 mm focal length.
DOI: 10.5281/zenodo.8036495
title: ENDGAME - Laboratory Experiment 2022-11-29 Exp. 002 - Part 7 - High Speed Camera data

description: Preliminary test with high speed camera and Schlieren shadow photography. Images of the rise of some coalescing air bubbles in a 2D setup obtained using 2 parallel glass sheets (3 mm thickness) separated by rubber seals and filled with distilled water. The gap between the two parallel sheets is 3 mm. Air was injected manually into the 2D setup through a straw (4 mm diam) at high speed. Frame rate of the high speed camera is 250 fps. The spherical mirror used for the Schlieren setup was 75 mm wide with a 750 mm focal length.