cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/9pxfpybh7f.1
title: Modelling tool for element (heavy metals, nutrients and carbon) flows during anaerobic digestion (AD) for the assessment of potential organic waste-derived fertilizers

description: The current modelling tool is part of the research by Angouria-Tsorochidou and Thomsen (2020) “The effect of the collection system on biowaste quality and a modelling framework to evaluate organic waste-derived fertilizers” Elisavet Angouria-Tsorochidou1, 2 and Marianne Thomsen1, 2*. The tool we present models the value of the digestate as potential organic fertilizer, measured by its nutrient content, and its quality, measured by its heavy metal content as a function of the ingestate characteristics and AD performance. We thus propose a simple model for pre-assessment of the digestate based on the ingestate quality. Additionally, we have created a database with 111 cases that includes biowaste quality data of i) source-separated organic fraction of municipal solid waste (SS-OFMSW) and ii) of mechanically separated organic fraction of municipal solid waste (MS-OFMSW) from mixed collected residual waste (Angouria-Tsorochidou, 2020/ DOI: 10.17632/3k5ks5w988.1). The database can be used as a source of quality data for the user to enter in the tool. 1 Research Group on Eco-Industrial System Analysis, Department of Environmental Science, Aarhus University, Frederiksborgvej 399, Postboks 358, DK-4000, Roskilde, Denmark 2 Aarhus University Centre for Circular Bioeconomy *Corresponding Author email: mth@envs.au.dk The research was performed as part of the Horizon 2020 project DECISIVE (Decentralised valorisation of biowaste) under grant agreement N° 689229. The Graduate School of Science and Technology at Aarhus University further supported this work. For feedback please contact Elisavet Angouria-Tsorochidou at elisavet.tsor@gmail.com
DOI: 10.17632/dwm2ttb5rv.1
title: Aphid herbivory drives asymmetry in carbon for nutrient exchange between plants and an arbuscular mycorrhizal fungus
DOI: 10.25345/c5665b
title: MassIVE MSV000084145 - 2019-07-28-Fait-grapes-berry-flesh-skin-GCMS
title: Study regarding the genetic variability of grapevines, GCMS analysis of berry flesh and skin
DOI: 10.24431/rw1k43u
title: Ocean currents measured by R/V Sikuliaq's Shipboard Acoustic Doppler Current Profiler (SADCP) during the Northern Gulf of Alaska LTER Spring 2018 cruise

description: This dataset contains east/west (U) and north/south (V) current velocities measured in the Gulf of Alaska. These data were collected aboard R/V Sikuliaq during the Spring 2018 cruise of the Northern Gulf of Alaska Long Term Ecological Research (NGA LTER) project. From April 18 to May 5, 2018, R/V Sikuliaq's Shipboard Acoustic Doppler Current Profiler (SADCP) measured currents in averaged depth bins at locations along the ship track. Data are provided in two zip files: nga_SKQ201810S_SADCP_csv.zip, containing 4 CSV-formatted ASCII files; and nga_SKQ201810S_SADCP_netCDF.zip, containing the same data in 4 netCDF-formatted files. R/V Sikuliaq's RDI Ocean Surveyor (OS) ADCPs are 150 kHz and 75 kHz phased arrays that are capable of pinging in broadband (bb), narrowband (nb), or interleaved modes. During cruise SKQ201810S, they were operated only in the narrowband mode ('nb') and data collection was split into two legs by a change in the heading offset ('A'). Data were initially acquired via the University of Hawaii Data Acquisition System (UHDAS), stored as a Common Ocean Data Access System (CODAS) database, and archived in the Rolling Deck to Repository (R2R). An additional copy of the edited data has been archived with the Joint Archive for Shipboard ADCP. See Online Resources for further information on these other national archives.
DOI: 10.17632/wvv5ypf75b.1
title: Data for: Effect of CO2 on the Dynamic and Equilibrium Interfacial Tension between Crude Oil and Formation Brine for a Deepwater Pre-salt Field

description: HPHT crude oil-brine dynamic and equilibrium interfacial tension for CO2 flooding using a Pre-salt oil and high salinity brine.
DOI: 10.25387/g3.11794347
title: Supplemental Material for Cruet-Burgos et al., 2020

description: Supplementary information for the genomic dissection of anthracnose resistance response in sorghum line SC112-14. These files includes molecular markers, linkage map, and anthracnose resistance response in RIL population and diversity panels.
DOI: 10.25387/g3.11794347.v1
title: Supplemental Material for Cruet-Burgos et al., 2020

description: Supplementary information for the genomic dissection of anthracnose resistance response in sorghum line SC112-14. These files includes molecular markers, linkage map, and anthracnose resistance response in RIL population and diversity panels.
DOI: 10.5066/p9o30xmz
title: Oyster habitat suitability modeling for the Alabama Barrier Island restoration assessment at Dauphin Island

description: A spatially explicit oyster habitat suitability index (HSI) model was developed for the Alabama barrier island restoration assessment at Dauphin Island. Based on previous oyster habitat suitability studies, seven water quality variables were selected and their relationships with habitat suitability were developed and incorporated into the oyster HSI model for Dauphin Island restoration assessment: 1) mean salinity, 2) minimum monthly mean salinity, 3) annual mean salinity, 4) annual mean dissolved oxygen, 5) annual mean total suspended solids, 6) annual mean water depth, and 7) annual mean water temperature. The final HSI score was calculated using the weighted geometric mean of the suitability scores of these individual variables. The oyster HSI model was calibrated and validated using field data on oyster density from the Alabama Department of Conservation and Natural Resources (ADCNR) Marine Resources Division (MRD and continuous water quality data from the Mobile Bay National Estuary Program. Then, the oyster HSI model was used to assess oyster habitat suitability changes with and without restoration under future storminess and sea level (SL) conditions. The barrier island restoration actions being assessed include beach and dune restoration, marsh restoration, and placement of sand in the littoral zone. The storminess bins included realizations with a "medium" storminess, which included 1 to 3 storms over a 10-year period (that is, ST2) and a "high" storminess, which included 4 to 5 storms over an equal period (that is, ST3). The two future sea levels included a SL of 0.3 m (that is, SL1) and a SL of 1.0 m (that is, SL3) above the contemporary SL. Specifically, the medium storminess was paired with the 0.3 m above the contemporary SL (that is, ST2SL1) and the "high" storminess bin was paired with the 1.0 m above the contemporary SL (that is, ST3SL3). To account for intertidal marsh vertical accretion as a component of marsh morphology evolution, two scenarios were included in modeling: the U.S. Army Corps of Engineers (USACE) high and intermediate SLR curves in which marsh kept pace with SLR through accretion (1 cm/yr) through 2022 under high SLR curve whereas marsh kept pace with SLR by accretion for the entirety of the USACE intermediate curve. Inputs of water quality conditions under future storminess and sea level conditions were provided by the CE-QUAL-ICM model that was coupled with a geomorphology model and a hydrodynamic model. This data release includes simulation results and metadata of oyster habitat suitability scores at each spatial unit (grid cell) across the study domain: estuarine waters near Dauphin Island.
DOI: 10.17632/9n4fmw9k5m.1
title: Supplemental Table 1: Multivariable regression analysis with and without ETDM patients

description: This table identifies risk factors for malignancy associated dermatomyositis (DM) within two years of DM diagnosis. Results show that the classic subtype of DM (CDM) and older age at DM diagnosis are independent risk factors for malignancy associated disease within the first two years of disease onset. This table demonstrates that the results are unchanged when early treated DM (ETDM) patients, defined as those treated with systemic immunosuppressants for more than 2 consecutive months within the first 6 months of skin disease onset, are grouped with CDM patients. DM, dermatomyositis; CDM, classic dermatomyositis; CADM, clinically amyopathic dermatomyositis; ETDM, early treated dermatomyositis
DOI: 10.17632/x8nv4tktzt.2
title: Does getting the worm help the breeding bird? Supplemental feeding increases nestling growth in some taxa but not others

description: Data are for a manuscript examining growth rates in eastern bluebird and black-capped chickadee nestlings in nests supplemented with 10 g mealworms per day vs. control nests.
DOI: 10.17632/6r8y5wc2bx.1
title: Data file for personality and Islamic religiosity: Preliminary survey data of Bruneian Malay Muslim university students and their psychological well-being, unethical behavior, and dark triad traits

description: The dataset contains survey data that examined personality and Islamic religiosity using a sample population of 277 Bruneian Malay Muslim university students. This includes demographics, and measures on personality and Islamic religiosity, as well as measures concerning psychological well-being, unethical behavior, and dark triad traits. All items had been properly labeled with values assigned, including ratings.
DOI: 10.17632/xnbwy8s2gy.2
title: Datasets for Residential GSHP Analysis by Climate in the United States

description: This data captures climate information and HVAC energy use for a baseline prototype home and for a replacement alternative energy home. The baseline home is a traditional DX cooling/gas furnace system, and the alternate system is a geothermal heat pump. Cooling degree days (CDD), heating degree days (HDD) and relative humidity were gathered from historical weather data for 12 cities across the contiguous United States. Geothermal heat pump coefficients were generated as inputs to EnergyPlus simulation software. These heat pump coefficients are generated by compiling heat pump performance data from 5 market leading, high efficiency residential geothermal heat pump manufacturers. These coefficients can be used to represent a general, market available heat pump in 2-ton, 3-ton, and 4-ton capacities. Baseline prototype home energy use by city was generated by EnergyPlus using the prototype home download file from www.energy.gov and the respective weather file for that city. This data can be interpreted as energy use per month by certain HVAC components. The GSHP home energy use by city was generated from EnergyPlus and the respective city weather file. The GSHP model was created by the authors to model the alternate closed loop, GSHP system.
DOI: 10.25345/c5rq5g
title: MassIVE MSV000085021 - WMMB235_Micromonospora_monoculture
title: File with LC-MS/MS data for WMMB235 Micromonospora sp.
DOI: 10.17632/rjgpkpk9hd.1
title: In-emotional blindness

description: Determining how emotional experience influences attention is a long standing goal of cognitive psychologists. Emotion is often broken down into two main dimensions, arousal and valence. While many theories focus more on the influence of one dimension than the other, the systematic investigation of the independent influences of the two dimensions of emotion on attention has been slow in the coming. In order to examine the relevance of both aspects of emotion and their interplay on attention simultaneously, in the current experiment we induced low (satisfaction) and high (happiness) arousal positive emotions and low (sadness) and high (anger) arousal negative emotions in subjects before having them complete an inattentional blindness (IB) test. In line with theories that focus on the role of valence, we found that negative emotions led to more IB than did positive emotions, and that arousal did not influence attention. Data were from an extended version of the EMO 16 akt (Schmidt-Atzert & Hüppe, 1996), the Affect Grid (Russell, Weiss, & Mendelsohn, 1989), as well as an Inattentional Blindness task. The study comprised a one factorial design including the between-subjects factor “induced emotion” with the five levels happiness (positive valence, high arousal), satisfaction (positive valence, low arousal), neutral emotion (neutral valence, low arousal), sadness (negative valence, low arousal), and anger (negative valence, high arousal). The design can also be described as a 2 (valence: positive vs. negative) x 2 (arousal: high vs. low) design with an additional control group (neutral valence with low arousal). The dependent variables were detection rates of the critical stimuli in trial 3 (i.e., the critical trial) and trial 5 (divided attention trial). The extended EMO 16 akt as well as the Affect Grid were collected before emotion induction (_1), after emotion induction (_2), and after the inattentional blindness task (_3). The inattentional blindness task comprised six trials. The 3rd (critical trial, inattentional trial), 5th (divided attention trial), and 6th (full attention trial) included an unexpected stimulus.
DOI: 10.17632/d9pwn2sx2v.1
title: Deferoxamine deconditioning increases neuronal vulnerability to hemoglobin
DOI: 10.17632/jjzrpr659v.3
title: Dataset Brazilian TEIQue-SF

description: Brazilian dataset. Brazilian-Portuguese-TEIQue-SF
DOI: 10.17632/jjzrpr659v.1
title: Dataset Brazilian TEIQue-SF

description: Brazilian dataset. Brazilian-Portuguese-TEIQue-SF
DOI: 10.17632/jjzrpr659v.2
title: Dataset Brazilian TEIQue-SF

description: Brazilian dataset. Brazilian-Portuguese-TEIQue-SF
DOI: 10.17632/5hg3gxzcgz.1
title: SUSC 121591

description: Figure for the submission to Surface Science Our reference: SUSC 121591 Article reference: SUSC_2019_789 Article title: Steps and Ge epitaxy on vicinal Si (111) surfaces: an STM study To be published in: Surface Science
DOI: 10.12751/g-node.21796b
title: Magnitude Estimation Data

description: Data is stored in two Matlab files. AE_all.mat contains the raw angular estimation data, DE_all.mat the raw distance estimation data for all participants. Each structure in the cell array Data is for one participant and contains pdata (produced distance or angle, that’s the stimulus) and rdata (re-produced distance or angle, the response). There are 3x180 values, first dimension are the three ranges used, so Data{1}.pdata(1,:) contains the stimuli for participant 1 and the short range in the angular estimation experiment (given you loaded AE_all.mat). Call load('AE_all.mat') plot(Data{1}.pdata',Data{1}.rdata','.') xlabel('stimulus (deg)'),ylabel('reproduction (deg)') to plot the angular estimation data for participant one with each range shown in a different color.
description: IsSupplementTo: Petzschner FH, Glasauer S (2011) Iterative Bayesian Estimation as an Explanation for Range and Regression Effects: A Study on Human Path Integration. J Neurosci 31(47):17220 –17229. https://doi.org/10.1523/JNEUROSCI.2028-11.2011
DOI: 10.17632/hnh3hzvb7p.1
title: early duodenal cancer

description: Figures and Tables for the manuscript, 'Proteome- and genome- wide profiling of early duodenal cancer'.
DOI: 10.17632/w5fxh4bv85.1
title: Association between serine proteinase activity and response to intra-articular corticosteroid injections in psoriatic arthritis

description: Objective: Intra-articular corticosteroid (IAS) injections are often used for the immediate relief of pain and inflammation in the joint of psoriatic arthritis (PsA) patients. However, studies identifying factors that can predict response to IAS injections are lacking. We aimed to assess the usefulness of serine proteinase activity measurements in PsA synovial fluid (SF) samples obtained at the time of injection in predicting clinical response. Methods: PsA patients with available SF samples from the knee joint were identified from the University of Toronto PsA cohort. Clinical response was defined as an absence of tenderness or swelling in the injected joint at the first post-injection visit, at either 3 or 6 months. Proteinase activity was determined by measuring cleavage of fluorogenic tri-peptide substrates for trypsin-like (VPR-AMC and VLK-AMC) and chymotrypsin-like (AAPF-AMC) serine proteinases. Generalized estimating equation (GEE) models were used to investigate which factors were associated with response. Results: A total of 32 patients with 60 injected joints and data available for follow-up at 3 or 6 months were included in the analysis, with 25 (41.7%) injected joints resulting in clinical response. Age, sex, active joint count, medications and serine proteinase activity at the time of injection were included as covariates. Only treatment with biologics was significantly associated with response at 3 or 6 months in the multivariate reduced model (OR 3.02, p = 0.027). Conclusion: We could not demonstrate an association between SF serine proteinase activity and response to IAS injection. Biologic agents significantly improve the likelihood of achieving clinical response.
DOI: 10.17632/m6pgkwy7rs.1
title: Data for: Response priming with horizontally and vertically moving primes: A comparison of German, Malaysian, and Japanese subjects

description: Response priming refers to the finding that a prime preceding a target influences the response to the target. With German subjects, using horizontally moving dots as primes, there are typically faster responses to compatible (i.e., prime and target are associated with the same response) compared to incompatible targets (i.e., positive compatibility effect, PCE) with short stimulus onset asynchronies (SOAs). In contrast, with longer SOAs, subjects responded faster to incompatible targets (i.e., negative compatibility effect, NCE). In the present study, we extended the evidence by adding vertically oriented material (i.e., motion primes and static arrow targets). Furthermore, we tested subjects from Malaysia and Japan where the vertical orientation is more present in daily life and compared them to subjects from Germany to investigate influences of the extent of experience with one orientation on the compatibility effects with this orientation.
DOI: 10.17632/3kx9gzj2yt.2
title: BMCRN_DN_OI-Figure S1

description: Figure S1 Size distribution of total RNA isolated from FFPE specimens
DOI: 10.17632/dhv8767r3z.3
title: BMCRN_DN_OI_Figure 1

description: Figure 1. Scatterplots showing correlation of signal values between carcinoma and normal follicular tissues. Differentially expressed genes in carcinoma tissues with fold change ≥2.0 are shown as green (upregulated) or red (downregulated) dots.
DOI: 10.17632/vjr6z8kw77.3
title: BMCRN_DN_OI-Table S1

description: Table S1 Clinical features of patients with FTC in this study
DOI: 10.17632/mwgjj6xszj.3
title: BMCRN_DN_OI-Table S2

description: Table S2 Normalised signal values from arrays in this study
DOI: 10.17632/8mk57syf2y.1
title: RTD/STIFFNESS RAW DATA

description: RTD/STIFFNESS RAW DATA
DOI: 10.17632/hgkwvvw43z.1
title: Carbon burial over the last four millennia is regulated by both climatic and land use change

description: These data are from the publication: Mao, J., Burdett, H. L., McGill, R. A. R., Newton, J., Gulliver, P., & Kamenos, N. A. (2020). Carbon burial over the last four millennia is regulated by both climatic and land use change. Global Change Biology, https ://doi.org/10.1111/gcb.15021 Abstract: Carbon sequestration by sediments and vegetated marine systems contributes to atmospheric carbon drawdown, but little empirical evidence is available to help separate the effects of climate change and other anthropogenic activities on carbon burial over centennial time scales. We used marine sediment organic carbon to determine the role of historic climate variability and human habitation in carbon burial over the past 5071 years. There was centennial-scale sensitivity of carbon supply and burial to climatic variability, with Little Ice Age cooling causing an abrupt ecosystem shift and an increase in marine carbon contributions compared to terrestrial carbon. Although land use changes during the late 1800s did not cause marked alteration in average carbon burial, they did lead to marked increases in the spatial variability of carbon burial. Thus, while carbon burial by vegetated systems is expected to increase with projected climate warming over the coming century, ecosystem restructuring caused by abrupt climate change may produce unexpected change in carbon burial whose variability is also modulated by land use change.
DOI: 10.5281/zenodo.3688734
title: COCONUT: the COlleCtion of Open NatUral producTs.

description: COCONUT is a COlleCtion of Open NatUral producTs. To assemble COCONUT, data from 50 open access collections and databases of natural products was retrieved and curated. This archive contains two files: The MongoDB dump, the most complete version of the dataset, with extensive molecular annotations The COCONUT4MetFrag file, used for MetFrag To restore the dataset in MongoDB: <pre><code class="language-bash">unzip COCONUTv2.zip cd COCONUTv1/COCONUT/ mongorestore --db=COCONUT --noIndexRestore . </code></pre> It is generally useful to avoid restoring indexes, as they can interfere with the local installation. Here are the commands to rebuild indexes: <pre><code class="language-json">mongo use COCONUT db.sourceNaturalProduct.createIndex( {source:1}) db.sourceNaturalProduct.createIndex( {simpleInchi:1}) db.sourceNaturalProduct.createIndex( {simpleInchiKey:1}) db.uniqueNaturalProduct.createIndex( {inchi:1}) db.uniqueNaturalProduct.createIndex( {inchikey:1}) db.uniqueNaturalProduct.createIndex( {smiles:1}) db.uniqueNaturalProduct.createIndex( {clean_smiles:1}) db.uniqueNaturalProduct.createIndex( {molecular_formula:1}) db.uniqueNaturalProduct.createIndex( {name:1}) db.fragment.createIndex({signature:1}) db.fragment.createIndex({signature:1, withsugar:-1}) </code></pre> <br> <strong>This version of COCONUT is beta and will be curated further, but can already be used as it is.</strong>
DOI: 10.17632/7z28zj3w5g.1
title: Soil P fractions along an altitudinal gradient

description: We sampled plants and soils (down to 100 cm depth) in grasslands along a 2300 m altitude gradient (mean annual temperature (MAT) from 9 to 0.3°C) between steppes on the Loess Plateau and meadows on the Tibetan Plateau, China. A modified Hedley P fractionation in combination with root and microbial P and phosphatase activity was used to characterize P transformations.
DOI: 10.17632/n5cjz2z26f.1
title: BMCRN_DN_OI-Figure S2

description: Figure S2 Size distribution of fragmented cDNAs
DOI: 10.17632/n5cjz2z26f.2
title: BMCRN_DN_OI-Figure S2

description: Figure S2 Size distribution of fragmented cDNAs
DOI: 10.17632/3kx9gzj2yt.1
title: BMCRN_DN_OI-Figure S1

description: Figure S1 Size distribution of total RNA isolated from FFPE specimens
DOI: 10.17632/nx6xm8hmw5.2
title: XRD and IR Dataset of LiCoO2 cathode thermal-treated up to 400 °C

description: Data are the raw data obtained from X-ray diffraction (XRD) and infrared transmittance (IR) measurements performed on LiCoO2 samples. The data describe the effects of heat-treatments at different temperatures on the crystalline structure (XRD data) and on chemical composition (IR data) of LiCoO2 cathode material. Data are presented in the Comma-separated Values (CSV) format and also in the (OPJ) format suitable for the Origin - Data Analysis and Graphing Software.
DOI: 10.17632/sbbmj83nsx.1
title: SP-CSA RBS/C Supplementary Data

description: Ni and NiFe RBS/c spectra recorded along (001) direction and corresponding damage distribution profiles. Comparison between samples implanted with Ar (16K) and Si (300K).
DOI: 10.17632/dhv8767r3z.2
title: BMCRN_DN_OI_Figure 1

description: Figure 1. Scatterplots showing correlation of signal values between carcinoma and normal follicular tissues. Differentially expressed genes in carcinoma tissues with fold change ≥2.0 are shown as green (upregulated) or red (downregulated) dots.