cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.v5b42u
title: Occurrence Download

description: A dataset containing 412 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Italy",
 "Country is Germany",
 "Country is Spain"
 ]
 },
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Coenonympha arcania Linnaeus, 1761"
 ]
}

 The dataset includes 412 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019069-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xgzedt
title: Occurrence Download

description: A dataset containing 1519 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 {
 "or" : [
 "TaxonKey is Xylophragma seemanniana (Kuntze) Sandwith",
 "TaxonKey is Bignonia neoheterophylla L.G.Lohmann"
 ]
 }
 ]
}

 The dataset includes 1519 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038732-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zdp4wq
title: Occurrence Download

description: A dataset containing 453 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year is greater than or equal to 1970",
 "TaxonKey is Zeugodacus cucurbitae (Coquillett, 1899)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 453 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0131047-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xsthha
title: Occurrence Download

description: A dataset containing 875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Phyllotis darwini (Waterhouse, 1837)"
 ]
}

 The dataset includes 875 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011678-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvwfb4
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Uruguay",
 "HasCoordinate is true",
 "TaxonKey is Scinax squalirostris (Lutz, 1925)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 46 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012523-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngzfuc
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rusavskia sorediata (Vain.) S.Y.Kondr. & Kärnefelt",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 60 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002046-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7fgyyu
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Country is Ecuador",
 "OccurrenceStatus is Present",
 "TaxonKey is Pyrrhura orcesi Ridgely & Robbins, 1988"
 ]
}

 The dataset includes 31 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0131048-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uyhar9
title: Occurrence Download

description: A dataset containing 3809 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ptiloris magnificus (Vieillot, 1819)"
 ]
}

 The dataset includes 3809 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011678-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.htgcr4
title: Occurrence Download

description: A dataset containing 1571 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "Geometry POLYGON((-78.01392 0.01923,-78.31055 -0.33783,-78.44788 -1.03546,-77.45361 -1.45294,-76.55823 -1.39801,-75.54749 -0.93109,-76.94275 0.15656,-78.01392 0.01923))",
 "StateProvince is Napo",
 "HasCoordinate is true",
 "TaxonKey is Reptilia"
 ]
}

 The dataset includes 1571 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024596-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k9zsp7
title: Occurrence Download

description: A dataset listing the 39 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Floristische Kartierung Österreichs - Mapping the Flora of Austria"
 ]
}

 The dataset's 39 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254717-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f7wx4z
title: Occurrence Download

description: A dataset containing 662 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parotia lawesii E.P.Ramsay, 1885"
 ]
}

 The dataset includes 662 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011679-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.waer5s
title: Occurrence Download

description: A dataset containing 493573 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Accipiter gentilis (Linnaeus, 1758)"
 ]
}

 The dataset includes 493573 records from 493 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000765-180920211646547/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.18864943
title: Additional file 4 of Transcriptome-scale spatial gene expression in rat arcuate nucleus during puberty

description: Additional file 4: Table S3. Information of DEGs with p-value less than 0.01 adjusted by MAST difference test method in 4 subclusters of ARC (Cluster 9).
DOI: 10.6084/m9.figshare.18864943.v1
title: Additional file 4 of Transcriptome-scale spatial gene expression in rat arcuate nucleus during puberty

description: Additional file 4: Table S3. Information of DEGs with p-value less than 0.01 adjusted by MAST difference test method in 4 subclusters of ARC (Cluster 9).
DOI: 10.6084/m9.figshare.18864946
title: Additional file 5 of Transcriptome-scale spatial gene expression in rat arcuate nucleus during puberty

description: Additional file 5: Table S4. Information of DEGs with p-value less than 0.01 adjusted by MAST difference test method in 4 subclusters of VMH (Cluster 10).
DOI: 10.6084/m9.figshare.18864946.v1
title: Additional file 5 of Transcriptome-scale spatial gene expression in rat arcuate nucleus during puberty

description: Additional file 5: Table S4. Information of DEGs with p-value less than 0.01 adjusted by MAST difference test method in 4 subclusters of VMH (Cluster 10).
DOI: 10.6084/m9.figshare.18864949
title: Additional file 6 of Transcriptome-scale spatial gene expression in rat arcuate nucleus during puberty

description: Additional file 6: Table S5. Gene expression profiles of SLC18A3 screened cells.
DOI: 10.6084/m9.figshare.18864949.v1
title: Additional file 6 of Transcriptome-scale spatial gene expression in rat arcuate nucleus during puberty

description: Additional file 6: Table S5. Gene expression profiles of SLC18A3 screened cells.
DOI: 10.6084/m9.figshare.18864952
title: Additional file 7 of Transcriptome-scale spatial gene expression in rat arcuate nucleus during puberty

description: Additional file 7: Table S6. Gene list of three expression modules by pseudotime analysis.
DOI: 10.6084/m9.figshare.18864952.v1
title: Additional file 7 of Transcriptome-scale spatial gene expression in rat arcuate nucleus during puberty

description: Additional file 7: Table S6. Gene list of three expression modules by pseudotime analysis.
DOI: 10.6084/m9.figshare.23583532.v1
title: Additional file 2 of Ambient RNAs removal of cortex-specific snRNA-seq reveals Apoe+ microglia/macrophage after deeper cerebral hypoperfusion in mice

description: Additional file 2: Table S1. The information for details of the nuclei suspension of four different samples. Table S2. The information for details of the reverse transcription products and snRNA-seq libraries of four different samples. Table S3. The differentially expressed genes list of the MG/Immu subset before decontamination by using muscat.. Table S4. The differentially expressed genes list of the MG/Immu subset after decontamination by using muscat. Table S5. The differentially expressed genes list of the cortex-specific transcriptomeby using DEseq2.
DOI: 10.6084/m9.figshare.23583532
title: Additional file 2 of Ambient RNAs removal of cortex-specific snRNA-seq reveals Apoe+ microglia/macrophage after deeper cerebral hypoperfusion in mice

description: Additional file 2: Table S1. The information for details of the nuclei suspension of four different samples. Table S2. The information for details of the reverse transcription products and snRNA-seq libraries of four different samples. Table S3. The differentially expressed genes list of the MG/Immu subset before decontamination by using muscat.. Table S4. The differentially expressed genes list of the MG/Immu subset after decontamination by using muscat. Table S5. The differentially expressed genes list of the cortex-specific transcriptomeby using DEseq2.
DOI: 10.6084/m9.figshare.18864971
title: Additional file 1 of Genome-wide analysis of circular RNAs and validation of hsa_circ_0086354 as a promising biomarker for early diagnosis of cerebral palsy

description: Additional file 1: Table S1. Relative clinical information of children with cerebral palsy and their healthy controls.
DOI: 10.6084/m9.figshare.18864971.v1
title: Additional file 1 of Genome-wide analysis of circular RNAs and validation of hsa_circ_0086354 as a promising biomarker for early diagnosis of cerebral palsy

description: Additional file 1: Table S1. Relative clinical information of children with cerebral palsy and their healthy controls.
DOI: 10.6084/m9.figshare.7854929
title: Integrative analysis identifies DNMTs against immune-infiltrating neutrophils and dendritic cells in colorectal cancer

description: Molecular characterizations, including microsatellite instability (MSI) and the CpG island methylator phenotype (CIMP) showed strong associations in colorectal carcinoma (CRC) and provided a deeper understanding of the etiology of disease. However, the global relationship between epigenetic alternations and changes in mRNA expression in CRC remains largely undefined, especially regarding the roles of DNA methyltransferases (DNMTs). Here, we conducted a systematic network comparison to explore the global conservation between co-expressed and co-methylated modules. We successfully identified immune-related modules that were regulated by DNMTs and had strong associations with immune-infiltrating neutrophils and dendritic cells in CRC. Moreover, we found that genes in those modules were prognostic for CRC, with 97.1% (168/173) being significantly influenced by DNMTs. Thus, this study resolved an interaction between DNA methylation and mRNA expression through DNMTs. Additionally, we provided evidence that DNMTs control the global hypomethylation of oncogenes, including <i>ALOX5AP</i> and <i>CSF3R</i> that otherwise have high methylation in normal colons. Such genes were also more sensitive to DNMT changes, such as in CRC. Collectively, our analyzes provided a systems biology approach to investigate the association among different molecular phenotypes in diseases.
DOI: 10.6084/m9.figshare.7854929.v1
title: Integrative analysis identifies DNMTs against immune-infiltrating neutrophils and dendritic cells in colorectal cancer

description: Molecular characterizations, including microsatellite instability (MSI) and the CpG island methylator phenotype (CIMP) showed strong associations in colorectal carcinoma (CRC) and provided a deeper understanding of the etiology of disease. However, the global relationship between epigenetic alternations and changes in mRNA expression in CRC remains largely undefined, especially regarding the roles of DNA methyltransferases (DNMTs). Here, we conducted a systematic network comparison to explore the global conservation between co-expressed and co-methylated modules. We successfully identified immune-related modules that were regulated by DNMTs and had strong associations with immune-infiltrating neutrophils and dendritic cells in CRC. Moreover, we found that genes in those modules were prognostic for CRC, with 97.1% (168/173) being significantly influenced by DNMTs. Thus, this study resolved an interaction between DNA methylation and mRNA expression through DNMTs. Additionally, we provided evidence that DNMTs control the global hypomethylation of oncogenes, including <i>ALOX5AP</i> and <i>CSF3R</i> that otherwise have high methylation in normal colons. Such genes were also more sensitive to DNMT changes, such as in CRC. Collectively, our analyzes provided a systems biology approach to investigate the association among different molecular phenotypes in diseases.
DOI: 10.6084/m9.figshare.18864976
title: Additional file 3 of Molecular structures and functional exploration of NDA family genes respond tolerant to alkaline stress in Gossypium hirsutum L.

description: Additional file 3: Table S3. Physical properties of the GhNDAs genes.
DOI: 10.6084/m9.figshare.18864976.v1
title: Additional file 3 of Molecular structures and functional exploration of NDA family genes respond tolerant to alkaline stress in Gossypium hirsutum L.

description: Additional file 3: Table S3. Physical properties of the GhNDAs genes.
DOI: 10.6084/m9.figshare.18864970
title: Additional file 2 of Molecular structures and functional exploration of NDA family genes respond tolerant to alkaline stress in Gossypium hirsutum L.

description: Additional file 2: Table S2. Rename of NDA genes in four Gossypium species and other eight species.
DOI: 10.6084/m9.figshare.18864970.v1
title: Additional file 2 of Molecular structures and functional exploration of NDA family genes respond tolerant to alkaline stress in Gossypium hirsutum L.

description: Additional file 2: Table S2. Rename of NDA genes in four Gossypium species and other eight species.
DOI: 10.6084/m9.figshare.18864979
title: Additional file 4 of Molecular structures and functional exploration of NDA family genes respond tolerant to alkaline stress in Gossypium hirsutum L.

description: Additional file 4: Table S4. Calculation of non-synonymous (Ka) to synonymous (Ks) substitution.
DOI: 10.6084/m9.figshare.18864979.v1
title: Additional file 4 of Molecular structures and functional exploration of NDA family genes respond tolerant to alkaline stress in Gossypium hirsutum L.

description: Additional file 4: Table S4. Calculation of non-synonymous (Ka) to synonymous (Ks) substitution.
DOI: 10.6084/m9.figshare.7854941
title: Effects of <i>ADIPOQ</i> polymorphisms on individual susceptibility to coronary artery disease: a meta-analysis

description: Whether adiponectin (<i>ADIPOQ</i>) polymorphisms affect individual susceptibility to coronary artery disease (CAD) remains controversial. Therefore, we performed this meta-analysis to better analyse associations between <i>ADIPOQ</i> polymorphisms and CAD. PubMed, Web of Science, Embase and CNKI were searched for eligible studies. Odds ratios (ORs) and 95% confidence intervals (CIs) were calculated. Totally, 51 studies were eligible for analyses. In overall analyses, significant associations with the susceptibility to CAD were detected for rs266729 (overdominant model: <i>p</i>= 0.03, OR = 1.11, 95% CI 1.01–1.22), rs822395 (recessive model: <i>p</i>= 0.007, OR = 1.21, 95% CI 1.05–1.40) and rs2241766 (dominant model: <i>p</i>= 0.0009, OR = 0.82, 95% CI 0.73–0.92; recessive model: <i>p</i>= 0.04, OR = 1.29, 95% CI 1.02–1.64; allele model: <i>p</i>&lt; 0.0001, OR = 0.80, 95% CI 0.73–0.88) polymorphisms. Further subgroup analyses by ethnicity revealed that rs1501299 polymorphism was significantly associated with the susceptibility to CAD in East Asians, while rs2241766 polymorphism was significantly associated with the susceptibility to CAD in Caucasians, East Asians and South Asians. In summary, our findings indicated that rs266729, rs822395, rs1501299 and rs2241766 polymorphisms were all significantly associated with the susceptibility to CAD in certain populations.
DOI: 10.6084/m9.figshare.7854941.v1
title: Effects of <i>ADIPOQ</i> polymorphisms on individual susceptibility to coronary artery disease: a meta-analysis

description: Whether adiponectin (<i>ADIPOQ</i>) polymorphisms affect individual susceptibility to coronary artery disease (CAD) remains controversial. Therefore, we performed this meta-analysis to better analyse associations between <i>ADIPOQ</i> polymorphisms and CAD. PubMed, Web of Science, Embase and CNKI were searched for eligible studies. Odds ratios (ORs) and 95% confidence intervals (CIs) were calculated. Totally, 51 studies were eligible for analyses. In overall analyses, significant associations with the susceptibility to CAD were detected for rs266729 (overdominant model: <i>p</i>= 0.03, OR = 1.11, 95% CI 1.01–1.22), rs822395 (recessive model: <i>p</i>= 0.007, OR = 1.21, 95% CI 1.05–1.40) and rs2241766 (dominant model: <i>p</i>= 0.0009, OR = 0.82, 95% CI 0.73–0.92; recessive model: <i>p</i>= 0.04, OR = 1.29, 95% CI 1.02–1.64; allele model: <i>p</i>&lt; 0.0001, OR = 0.80, 95% CI 0.73–0.88) polymorphisms. Further subgroup analyses by ethnicity revealed that rs1501299 polymorphism was significantly associated with the susceptibility to CAD in East Asians, while rs2241766 polymorphism was significantly associated with the susceptibility to CAD in Caucasians, East Asians and South Asians. In summary, our findings indicated that rs266729, rs822395, rs1501299 and rs2241766 polymorphisms were all significantly associated with the susceptibility to CAD in certain populations.
DOI: 10.6084/m9.figshare.23583591
title: Additional file 1 of Transcriptome- and proteome-wide association studies nominate determinants of kidney function and damage

description: Additional file 1. Supplementary tables listing the results for TWAS, colocalization analyses, PWAS, conditional analysis, prospective analysis and the pharmacological annotation of identified targets.
DOI: 10.6084/m9.figshare.23583591.v1
title: Additional file 1 of Transcriptome- and proteome-wide association studies nominate determinants of kidney function and damage

description: Additional file 1. Supplementary tables listing the results for TWAS, colocalization analyses, PWAS, conditional analysis, prospective analysis and the pharmacological annotation of identified targets.
DOI: 10.48597/x9xx-p9uc
title: Measurement of Arsenic at Víznar

description: Measurement of Arsenic at Víznar
DOI: 10.48597/xaq3-9an4
title: Measurement of Benzo_ghi_perylene at Víznar

description: Measurement of Benzo_ghi_perylene at Víznar
DOI: 10.48597/y5jc-gk5x
title: Measurement of Sodium at Víznar

description: Measurement of Sodium at Víznar
DOI: 10.48597/ytk8-zykr
title: Measurement of Elemental_carbon at Campisabalos

description: Measurement of Elemental_carbon at Campisabalos
DOI: 10.48597/yubj-f677
title: Measurement of Sulphate_total at Campisabalos

description: Measurement of Sulphate_total at Campisabalos
DOI: 10.48597/z7x6-et8p
title: Measurement of Ammonium at Víznar

description: Measurement of Ammonium at Víznar
DOI: 10.48597/z8zz-w9hg
title: Measurement of Fluorene at Víznar

description: Measurement of Fluorene at Víznar
DOI: 10.48597/2d7t-vqgw
title: Measurement of Carbon_monoxide at Zeppelin mountain (Ny-Ålesund)

description: Measurement of Carbon_monoxide at Zeppelin mountain (Ny-Ålesund)
DOI: 10.48597/zy2b-83yw
title: Measurement of Pm25_mass at Víznar

description: Measurement of Pm25_mass at Víznar
DOI: 10.48597/2ed3-8e2z
title: Measurement of Sulphate_total at Ny-Ålesund - Nordpolhotellet

description: Measurement of Sulphate_total at Ny-Ålesund - Nordpolhotellet
DOI: 10.48597/2nsp-s7yq
title: Measurement of Sum_ammonia_and_ammonium at Birkenes II

description: Measurement of Sum_ammonia_and_ammonium at Birkenes II
DOI: 10.48597/45ap-7p8v
title: Measurement of Nitrogen_dioxide at Kårvatn

description: Measurement of Nitrogen_dioxide at Kårvatn
DOI: 10.48597/559k-npvp
title: Measurement of Pm25_mass at Diabla Gora

description: Measurement of Pm25_mass at Diabla Gora
DOI: 10.48597/597y-4mra
title: Measurement of Aerosol_absorption_coefficient at Trollhaugen

description: Measurement of Aerosol_absorption_coefficient at Trollhaugen
DOI: 10.48597/5cvh-ff34
title: Measurement of Pm10_mass at Diabla Gora

description: Measurement of Pm10_mass at Diabla Gora
DOI: 10.48597/5q62-t4ck
title: Measurement of Sulphur_dioxide at Hurdal

description: Measurement of Sulphur_dioxide at Hurdal
DOI: 10.48597/5u55-2ty7
title: Measurement of Potassium at Tustervatn

description: Measurement of Potassium at Tustervatn
DOI: 10.48597/5yyn-4eb8
title: Measurement of Ozone at Tustervatn

description: Measurement of Ozone at Tustervatn
DOI: 10.48597/6269-5gjx
title: Measurement of Inorganics in air and particle phase at Zeppelin mountain (Ny-Ålesund)

description: Measurement of Inorganics in air and particle phase at Zeppelin mountain (Ny-Ålesund)
DOI: 10.48597/6457-apmq
title: Measurement of Ammonia at Tustervatn

description: Measurement of Ammonia at Tustervatn
DOI: 10.48597/69c4-utwc
title: Measurement of Aerosol_absorption_coefficient at Birkenes II

description: Measurement of Aerosol_absorption_coefficient at Birkenes II
DOI: 10.48597/6d9y-rppj
title: Measurement of Ammonium at Birkenes II

description: Measurement of Ammonium at Birkenes II
DOI: 10.6084/m9.figshare.23583616
title: Additional file 3 of Pharmacologic inhibition of IL11/STAT3 signaling increases MHC-I expression and T cell infiltration

description: Additional file 3: Table S1. Clinicopathologic characteristics of CRC patients.
DOI: 10.6084/m9.figshare.23583619
title: Additional file 4 of Pharmacologic inhibition of IL11/STAT3 signaling increases MHC-I expression and T cell infiltration

description: Additional file 4: Table S2. Primer sequence used for mRNA detection in human sample and cell line.
DOI: 10.48597/6rvb-eva6
title: Measurement of Particle_number_size_distribution at Puy de Dôme

description: Measurement of Particle_number_size_distribution at Puy de Dôme
DOI: 10.6084/m9.figshare.23583616.v1
title: Additional file 3 of Pharmacologic inhibition of IL11/STAT3 signaling increases MHC-I expression and T cell infiltration

description: Additional file 3: Table S1. Clinicopathologic characteristics of CRC patients.
DOI: 10.48597/7mss-dsct
title: Measurement of Pressure at Zeppelin mountain (Ny-Ålesund)

description: Measurement of Pressure at Zeppelin mountain (Ny-Ålesund)