cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.ht76hdrgg
title: Electrophysiological recordings showing allosteric modulation of LRRC8 channels by targeting their cytoplasmic domains with specific sybodies

description: Members of the LRRC8 family form heteromeric assemblies, which function as
 volume-regulated anion channels. These modular proteins consist of a
 transmembrane pore and cytoplasmic leucine-rich repeat (LRR) domains.
 Despite their known molecular architecture, the mechanism of activation
 and the role of the LRR domains in this process has remained elusive. Here
 we have addressed this question by generating synthetic nanobodies, termed
 sybodies, which target the LRR domain of the obligatory subunit LRRC8A.We
 used these binders to investigate their interaction with homomeric LRRC8A
 channels by cryo-electron microscopy and the consequent effect on channel
 activation by electrophysiology. The five identified sybodies either
 inhibit or enhance activity by binding to distinct epitopes of the LRR
 domain, thereby altering channel conformations. In combination, our work
 provides a set of specific modulators of LRRC8 proteins and reveals the
 role of their cytoplasmic domains as regulators of channel activity by
 allosteric mechanisms.
description: Recording and
 processing of this data is described in the article: Deneka D, et
 al.: “Allosteric modulation of LRRC8 channels by targeting their
 cytoplasmic domains”, Nat. Commun.
DOI: 10.5061/dryad.hx3ffbgfb
title: Understanding behavioural responses to human-induced rapid environmental change: A meta-analysis

description: Behavioural responses are often the first reaction of an organism to human
 induced rapid environmental change (HIREC), yet current empirical evidence
 provides no consensus about the main environmental features that animals
 respond to behaviourally or which behaviours are responsive to HIREC. To
 understand how changes in behaviour can be predicted by different forms of
 HIREC, we conducted a meta-analysis of the existing empirical literature
 focusing on behavioural responses to five axes of environmental change
 (climate change, changes in CO2, direct human impact, changes in nutrients
 and biotic exchanges) in five behavioural domains (aggression,
 exploration, activity, boldness and sociability) across a range of taxa
 but with a focus on fish and bird species. Our meta-analysis revealed a
 general absence of directional behavioural responses to HIREC. However,
 the absolute magnitude of the effect sizes was large. This means that
 animals have strong behavioural responses to HIREC, but the responses are
 not clearly in any particular direction. Moreover, absolute magnitude of
 the effect sizes differed between different behaviours and different forms
 of HIREC:  Exploration responded more strongly than activity, and
 climate change induced the strongest behavioural responses. Model
 heterogeneities identified that effect sizes varied primarily because of
 study design, and the specific sample of individuals used in a study;
 phylogeny also explains significant variation in our bird model. Based on
 these results, we make four recommendations to further our
 understanding:  1) a more balanced representation of laboratory
 and field studies, 2) consideration of context dependency, 3)
 standardisation of the methods and definitions used to quantify and study
 behaviours, and 4) consideration of the role for individual differences in
 behaviour.
DOI: 10.5061/dryad.t1g1jwt30
title: Age- and sex-dependent variation in relatedness corresponds to reproductive skew, territory inheritance and workload in cooperatively breeding cichlids

description: Kin selection plays a major role in the evolution of cooperative systems.
 However, many social species exhibit complex within-group relatedness
 structures, where kin selection alone cannot explain the occurrence of
 cooperative behaviour. Understanding such social structures is crucial to
 elucidate the evolution and maintenance of multi-layered cooperative
 societies. In lamprologine cichlids, intragroup relatedness seems to
 correlate positively with reproductive skew, suggesting that in this clade
 dominants tend to provide reproductive concessions to unrelated
 subordinates to secure their participation in brood care. We investigate
 how patterns of within-group relatedness covary with direct and indirect
 fitness benefits of cooperation in a highly social vertebrate, the
 cooperatively breeding, polygynous lamprologine cichlid Neolamprologus
 savoryi. Behavioural and genetic data from 43 groups containing 578
 individuals show that groups are socially and genetically structured into
 subgroups. About 17% of group members were unrelated immigrants, and
 average relatedness between breeders and brood care helpers declined with
 helper age due to group membership dynamics. Hence the relative importance
 of direct and indirect fitness benefits of cooperation depends on helper
 age. Our findings highlight how both direct and indirect fitness benefits
 of cooperation and group membership can select for cooperative behaviour
 in societies comprising complex social and relatedness structures.
description: Please read the the readme.txt file for a detailed description of
 the dataset.
DOI: 10.5061/dryad.brv15dv9v
title: Crop heterogeneity is positively associated with beneficial insect diversity in subtropical farmlands

description: Increasing crop configurational heterogeneity – smaller crop fields with
 more field margins – has been repeatedly found to support farmland
 biodiversity. But research on compositional crop heterogeneity – the
 number and evenness of crop types – has usually shown only weak effects.
 However, much of this research has been conducted in large-scale temperate
 agroecosystems. We examined smallholder subtropical agroecosystems in
 southern China to assess the effects of crop heterogeneity on beneficial
 insect biodiversity. In addition to pollinators (bees, apoid and vespid
 wasps, butterflies), we studied dung beetles and dragonflies/damselflies,
 which are not usually considered in cropland heterogeneity studies, but
 are abundant in these multi-functional agroecosystems. We sampled these
 taxa in 468 transects placed inside 52 farms across three seasons (summer,
 spring, winter), collecting data on 27,245 insects belonging to 160
 species. We found a strong positive effect of crop compositional
 heterogeneity (measured by Shannon-Wiener index) on dung beetle and
 dragonfly/damselfly diversity. Bees/wasps and butterflies, conversely,
 were positively affected by crop configurational heterogeneity (measured
 by cumulative field margin length). Field margin type, categorized by the
 structure of the dominant crop types, was consistently an important
 explanatory variable, with weedy margins having high insect diversity. The
 presence of a vegetable crop on one side of the field margin, compared to
 non-vegetable monocultures on both sides, increased diversity in 3/4
 taxon-season comparisons made for rice, and 6/9 comparisons made for
 sugarcane or corn. Synthesis and applications. We demonstrate that crop
 compositional heterogeneity can support insects that respond to
 differences among crop types, including taxa that play a key role in
 nutrient cycling (dung beetles) and natural pest control
 (dragonflies/damselflies). Incorporating structurally diverse crops into
 monoculture Asian agroecosystems can reduce the adverse effects these
 intensive systems have on beneficial insects, and increase crucial
 ecosystem services.
description: The code here is for the dung beetles in spring analysis, and can
 be adapted to the other taxa/seasons.
DOI: 10.5061/dryad.v6wwpzgwr
title: Improving the efficiency of single cell genome sequencing based on overlapping pooling strategy

description: Single cell genome sequencing has become a useful tool in medicine and
 biology studies. However, an independent library is required for each cell
 in single cell genome sequencing, so that the cost grows in step with the
 number of cells. In this study, we report a study on efficient single-cell
 copy number variation (CNV) analysis based on overlapping pooling strategy
 together with branch and bound (B&B) algorithm. Single cells are
 overlapped pooled before sequencing, and later are assorted into specific
 types by estimating their CNV patterns by B&B algorithm. Instead
 of constructing libraries for each cell, a library is required only for
 each pool. As long as the number of pools is smaller than the cells, fewer
 libraries are needed, and a lower cost is spent. Through computer
 simulations, we overlapping pooled 80 cells into 40 and 27 pools and
 classified them into cell types based on CNV pattern. The results showed
 that 84% cells in 40 pools and 76.5% cells in 27 pools were correctly
 classified on average, while only half or one-third of the sequencing
 libraries are required. Combining with traditional approaches, our method
 is expected to significantly improve the efficiency of single cell genome
 sequencing.
description: The dataset contains the statistics
 of the sequencing data and the copy number profiles of the single
 cells.  The single-cell sequencing data of
 80 single cells from 7 tumor patients with Triple-Negative Breast Cancer
 (TNBC) were downloaded in FASTQ format from National Center for
 Biotechnology Information (NCBI) [15] under Sequence Read Archive (SRA)
 accessions SRP064210. 
 Performed basic statistics on BAM files mapped to the human
 genome hg19. We followed the protocol put
 forward by Baslan et al. to obtain the copy number profile of single
 cells.
description: From the sequencing data statistics file, we can get the number
 of single cells used for analysis. The number of sequencing reads,
 mapping rate, genome coverage, and sequencing depth were also
 included. From the copy number profiles file, we can
 know the copy number of every single cell under the current bin
 size.
DOI: 10.5061/dryad.qnk98sfhd
title: Data for: Assortative mating in an ecological context: Effects of mate choice errors and relative species abundance on the frequency and asymmetry of hybridization

description: The frequency and asymmetry of mixed-species mating set the initial stage
 for the ecological and evolutionary implications of hybridization. How
 such patterns of mixed-species mating, in turn, are influenced by the
 combination of mate choice errors and relative species abundance remain
 largely unknown. We develop a mathematical model that generates
 predictions for how relative species abundances and mate choice errors
 affect hybridization patterns. When mate choice errors are small
 (&lt;5%) the highest frequency of hybridization occurs when one of the
 hybridizing species is at low abundance, but when mate choice errors are
 high (&gt;5%) the highest hybridization frequency occurs when species
 occur in equal proportions. Furthermore, females of the less abundant
 species are overrepresented in mixed-species matings. We compare our
 theoretical predictions with empirical data on naturally hybridizing
 Ficedula flycatchers and find that hybridization is highest when the two
 species occur in equal abundance, implying rather high mate choice errors.
 We discuss ecological and evolutionary implications of our findings and
 encourage future work on hybrid zone dynamics that take demographic
 aspects, such as relative species abundance, into account.
DOI: 10.34740/kaggle/dsv/14646982
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.ysbc2f
title: Occurrence Download

description: A dataset containing 1730 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pelopidas agna"
 ]
}

 The dataset includes 1730 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002921-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.66t1g1k2q
title: Carcass scavenging relaxes chemical-driven female interference competition in flour beetles

description: Female-female nonsexual interference competition is a major fitness
 determinant of biased sex-ratio groups with high female density. What
 strategies can females use to overcome the negative impact of this
 competition? We used flour beetle Tribolium castaneum to answer this
 question, where competing females from female-biased groups were already
 known to suppress each other’s fecundity by secreting toxic quinones from
 their stink glands, indicating a unique chemical-driven interference
 competition. Surprisingly, increasing resources did not alleviate these
 fitness costs. Females also did not disperse more from the site of
 interference competition. Hence, the competition was neither influenced by
 the total resource availability nor the lack of opportunity to avoid
 chemical interference. Instead, protein sequestered via scavenging of
 nutrient-rich carcasses relaxed female competition, by increasing their
 fecundity and reducing the quinone content. Finally, stink gland
 components themselves triggered carcass-scavenging and increased
 fecundity, indicating the possibility of a novel chemical-driven feedback
 loop to reduce the competition. Taken together, in the present work, we
 could provide the rare analyses where multiple competing hypotheses were
 jointly tested to establish carcass-scavenging as an important potential
 strategy to overcome the fitness costs of intrasexual female interference
 competition.
DOI: 10.25349/d9j61z
title: Range utilization slopes as a measure of central tendency and intergroup overlap in primates

description: Animals that occupy stable home ranges tend to unevenly exploit different
 areas in their efforts to find fitness-limiting resources, while also
 reducing the risks of intergroup conflict. Most analyses of these
 extrinsic forces identify their effects on movement paths and home range
 geometry, but not on the interaction of these responses or how movements
 might be centrally constrained as a result of competition with neighbors.
 The range utilization slope is a measure of central tendency and consists
 of space use plotted against distance from the center of the range. Slopes
 tend to be linear, concave-up, or concave-down, and are predicted to
 change as a function of feeding competition from neighbors. To test this
 prediction and determine the spatio-temporal scales over which the central
 tendency might vary, we calculated utilization slopes and an index of
 range overlap for grey-cheeked mangabeys (Lophocebus albigena), blue
 monkeys (Cercopithecus mitis), and red-tailed monkeys (C. ascanius) in
 Uganda, which consume similar diets but experience varying intensities of
 intergroup conflict. As predicted, we find variation in utilization slopes
 across and within species, which corresponds with the extent of range
 overlap among conspecific groups.
description: Members of the Ngogo Monkey Project intermittently collected
 observational data on monkey groups from January 2008 through August 2016
 at the Ngogo research station (0°29' N 30°25' E) in Kibale
 National Park (0°13-41' N 30°19-32' E), Uganda. Monkey groups
 were followed from dawn until dusk for 5–14 consecutive days per month. In
 2008–2009, 3–4 red-tailed monkey groups were followed simultaneously for 1
 week each month, and alternated with week-long follows of 3–6 grey-cheeked
 mangabey groups. In 2012–2015, pairs or trios of red-tailed monkey groups
 were observed for 1–2 weeks each month for periods of (mean ± SD) 4.9 ±
 1.1 months (N = 7 periods), with 11–17 months between successive periods
 in which a group was followed. The blue monkey groups were followed
 monthly from Aug 2015 through Aug 2016. The field team recorded the
 centroid position of the majority of group members every 30 min using a 50
 x 50 m gridded map of the trail system and by pacing to the nearest trails
 (2008–2015), or by using a hand-held GPS unit (2015–2016) and converting
 the UTM coordinates to the grid cell format.
description: We used STATA v12.1 to analyze the data, but the files can also
 be opened with Microsoft Excel or R.
DOI: 10.15468/dl.spj4ad
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Albizia julibrissin Durazz.",
 "Country is Georgia"
 ]
}

 The dataset includes 37 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007344-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15548297
title: Beryllium 2s2p 1P1
DOI: 10.5281/zenodo.15548298
title: Beryllium 2s2p 1P1
DOI: 10.5281/zenodo.15310405
title: Dataset for 'Influence of Hydrogen and Oxygen Impurities on Platinum-Catalyzed Acetylene Hydrochlorination'

description: This repository contains the full dataset accompanying our study on Pt-based catalysts (single atoms and nanoparticles) supported on activated carbon for acetylene hydrochlorination under hydrogen and oxygen co-feeding conditions. The dataset includes DFT simulations, catalytic activity measurements, STEM analyses, XRD characterization, and O₂-TPD results.
DOI: 10.5281/zenodo.15310404
title: Dataset for 'Influence of Hydrogen and Oxygen Impurities on Platinum-Catalyzed Acetylene Hydrochlorination'

description: This repository contains the full dataset accompanying our study on Pt-based catalysts (single atoms and nanoparticles) supported on activated carbon for acetylene hydrochlorination under hydrogen and oxygen co-feeding conditions. The dataset includes DFT simulations, catalytic activity measurements, STEM analyses, XRD characterization, and O₂-TPD results.
DOI: 10.15468/dl.cn8eq7
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arctotis gumbletonii",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 14 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008881-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ksezb
title: Occurrence Download

description: A dataset containing 2873191413 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Theromyzon, Haemadipsa, Haemopis, Alma, Eiseniella, Animalia, Dero, Tubificoides, Barbronia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2873191413 records from 55948 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008791-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.un863g
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Winteria telescopa Brauer, 1901",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.9449 -26.0614,44.9648 -26.0621,44.9648 -25.1504,43.6164 -25.1504,43.93 -25.627,44.5871 -25.7989,44.9449 -26.0614))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009999-250525065834625/datasets/export for details.
DOI: 10.15468/dl.fjv7h6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Enteromius roussellei)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024854-250811113504898/datasets/export for details.
DOI: 10.5281/zenodo.15474189
title: Table 1 in Two poorly known Arctic sea anemones, Cactosoma abyssorum and Halcampa arctica (Actiniaria: Halcampidae)

description: Table 1. Size ranges (length × width, in microns) and distribution of cnidae of Cactosoma abyssorum. Letters in brackets correspond to letters in Fig. 3. Таблица 1. РаЗмеры (длина × Ширина, в микронах) и распределение стрекательных капсул Cactosoma abyssorum. Буквы в скобках соответствуют буквам на рис. 3.
Body regionCnidaeSize ranges (µm)Base and scapus(A) basitrichs (few)13–18 × 2.5–3.5Scapulus(B) basitrichs (very numerous)22–28 × 3.5–5Tentacles(C) spirocysts (very numerous) (D) basitrichs (common)20–44 × 2.5–4 18–25 × 2.5–4Actinopharynx(E) basitrichs (common) (F) p -mastigophores (common)17–21 × 2–4 22–30 × 4–5.5Filaments(G) basitrichs (common) (H) p -mastigophores (common)15–21 × 2–3 19–25 × 4–5Endodermbasitrichs (rare)16–21 × 2.5–3.5Physa and scapus(A) basitrichs (common)10–13 × 2–2.5Scapulus(B) spirocysts (very numerous) (C) basitrichs (common)18–28 × 2.5–3.5 12–15 × 2Tentacles(D) spirocysts (very numerous) (E) basitrichs (rare)20–42 × 2–4 15–16 × 2Actinopharynx(F) basitrichs (common) (G) p -mastigophores B1 (numerous)15–16 × 2–2.5 29–40 × 5–6.5Filaments(H) basitrichs (few) (I) p -mastigophores B1 (common) (J) p -mastigophores B1 (common)14–16 × 2–3 9–11 × 4–5 23–32 × 5.5–7.5
description: Published as part of Sanamyan, N. P., Sanamyan, K. E. & Grebelnyi, S. D., 2016, Two poorly known Arctic sea anemones, Cactosoma abyssorum and Halcampa arctica (Actiniaria: Halcampidae), pp. 3-10 in Invertebrate Zoology 13 (1) on page 3, DOI: 10.15298/invertzool.13.1.01, http://zenodo.org/record/15472499
DOI: 10.5281/zenodo.15474193
title: Table 2 in Two poorly known Arctic sea anemones, Cactosoma abyssorum and Halcampa arctica (Actiniaria: Halcampidae)

description: Table 2. Size ranges (length × width, in microns) and distribution of cnidae of the specimens #5, #6 and #7 of Phellia crassa. Таблица 2. РаЗмеры (длина × Ширина, в микронах) и распределение стрекательных капсул ЭкЗемплЯров #5, #6 и #7 Phellia crassa.
Body regionCnidaeSpecimen #5 (lectotype ZMBN 105402)Specimen #6Specimen #7Base and scapusBasitrichs13–20 × 2.5–3.5 (common)15–17 × 2.5–3 (few)14–16 × 2.5–3.5 (few)ScapulusSpirocysts Basitrichs27–32 × 3.5–5 (common) 20–27 × 3–4 (very numerous)(very rare) 21–26 × 3–4.5 (very numerous)20–40 × 3–4 (very rare) 20–25 × 3–4 (very numerous)TentaclesSpirocysts Basitrichs20–40 × 2.5–4.5 (very numerous) 15–20 × 2.5–3.5 (few)20–37 × 2.5–4 (very numerous) 14–18 × 2.5–3.5 (few)17–36 × 1.5–4 (very numerous) 16–18 × 3 (rare)ActinopharynxBasitrichs p -mastigophores17–21 × 2.5–3.5 (common) 18–25 × 4–6– –– –FilamentsBasitrichs p -mastigophores16–25 × 2–3 (common) 23–26 × 5–6.5 (common)– –– –
description: Published as part of Sanamyan, N. P., Sanamyan, K. E. & Grebelnyi, S. D., 2016, Two poorly known Arctic sea anemones, Cactosoma abyssorum and Halcampa arctica (Actiniaria: Halcampidae), pp. 4 in Invertebrate Zoology 13 (1) on page 4, DOI: 10.15298/invertzool.13.1.01, http://zenodo.org/record/15472499
DOI: 10.5281/zenodo.15474867
title: Table 1 in A new species of solitary Entoprocta, Loxosomella angusta sp. n., from the White Sea

description: Table 1. Measurements of holotype (*) and four other specimens (µm). Таблица 1. основные раЗмеры тела голотипа (*) и еЩе четырех особей (мкм).
Specimen1*2345Total length501566512575470Calyx length204174174198213Calyx width in lateral view108909598–Calyx width in frontal view103–9912595Stalk length297392338377257Stalk width6779667781Length of basal part of stalk76948110095
description: Published as part of Borisanova, A. O., 2016, A new species of solitary Entoprocta, Loxosomella angusta sp. n., from the White Sea, pp. 45 in Invertebrate Zoology 13 (1) on page 45, DOI: 10.15298/invertzool.13.1.03, http://zenodo.org/record/15472544