cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5743002
title: Additional file 1: Table S1. of A compendium and functional characterization of mammalian genes involved in adaptation to Arctic or Antarctic environments

description: Combined list of human genes hypothesized to be involved in cold adaptation according to Cardona et al. (2014) and Fumagalli et al. (2015). Table S2. Candidate genes identified to be under positive selection in Arctic fox (Kumar et al., 2015). Table S3. Genes potentially underwent positive selection in Yakut horse (Librado et al., 2015). Table S4. List of genes with fixed, derived amino acid and loss-of-function substitutions in Woolly Mammoths compared to Asian elephants (Lynch et al., 2015). Table S5. Candidate genes under positive selection according to Hudson-Aguade-Kreitman test in inÂ Polar bear (Liu et al., 2014). Table S6. Minke whale genes found as positively selected (Yim et al., 2014). Table S7. List of 416 genes that potentially underwent selection in at least two different species (Selection_shared list, compendium). Table S8. Over-represented GO terms that characterize 416 genes from the compendium. Table S9. Gene expression analysis performed by TSEA tool. Table S10. Over-represented GO terms that characterize 42 genes from the compendium, which are expressed mainly in the lung; Table S11. Over-represented GO terms that characterize 21 genes from the compendium, which are expressed mainly in the liver. (XLSX 1315 kb)
DOI: 10.6084/m9.figshare.5743002.v1
title: Additional file 1: Table S1. of A compendium and functional characterization of mammalian genes involved in adaptation to Arctic or Antarctic environments

description: Combined list of human genes hypothesized to be involved in cold adaptation according to Cardona et al. (2014) and Fumagalli et al. (2015). Table S2. Candidate genes identified to be under positive selection in Arctic fox (Kumar et al., 2015). Table S3. Genes potentially underwent positive selection in Yakut horse (Librado et al., 2015). Table S4. List of genes with fixed, derived amino acid and loss-of-function substitutions in Woolly Mammoths compared to Asian elephants (Lynch et al., 2015). Table S5. Candidate genes under positive selection according to Hudson-Aguade-Kreitman test in inÂ Polar bear (Liu et al., 2014). Table S6. Minke whale genes found as positively selected (Yim et al., 2014). Table S7. List of 416 genes that potentially underwent selection in at least two different species (Selection_shared list, compendium). Table S8. Over-represented GO terms that characterize 416 genes from the compendium. Table S9. Gene expression analysis performed by TSEA tool. Table S10. Over-represented GO terms that characterize 42 genes from the compendium, which are expressed mainly in the lung; Table S11. Over-represented GO terms that characterize 21 genes from the compendium, which are expressed mainly in the liver. (XLSX 1315 kb)
DOI: 10.6084/m9.figshare.5742948
title: Additional file 1: of Unilateral lateral rectus muscle advancement surgery based on one-fourth of the angle of consecutive esotropia

description: Supplementary file. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.5742948.v1
title: Additional file 1: of Unilateral lateral rectus muscle advancement surgery based on one-fourth of the angle of consecutive esotropia

description: Supplementary file. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.5742939
title: Additional file 1: of Comparative analysis of inverted repeats of polypod fern (Polypodiales) plastomes reveals two hypervariable regions

description: List of genes annotated for D. filix-mas and D. blanfordii chloroplast genome by DOGMA. (XLSX 46Â kb)
DOI: 10.6084/m9.figshare.5742939.v1
title: Additional file 1: of Comparative analysis of inverted repeats of polypod fern (Polypodiales) plastomes reveals two hypervariable regions

description: List of genes annotated for D. filix-mas and D. blanfordii chloroplast genome by DOGMA. (XLSX 46Â kb)
DOI: 10.6084/m9.figshare.5742915
title: Additional file 3: of Taxonomic assessment of Allium species from Kazakhstan based on ITS and matK markers

description: Polymorphic sites of matK in twenty Allium species collected in Kazakhstan. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.5742915.v1
title: Additional file 3: of Taxonomic assessment of Allium species from Kazakhstan based on ITS and matK markers

description: Polymorphic sites of matK in twenty Allium species collected in Kazakhstan. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.5742897
title: Additional file 2: of Taxonomic assessment of Allium species from Kazakhstan based on ITS and matK markers

description: Polymorphic sites of ITS in twenty Allium species collected in Kazakhstan. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.5742897.v1
title: Additional file 2: of Taxonomic assessment of Allium species from Kazakhstan based on ITS and matK markers

description: Polymorphic sites of ITS in twenty Allium species collected in Kazakhstan. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.5742879
title: Additional file 3: of Evolution of blue-flowered species of genus Linum based on high-throughput sequencing of ribosomal RNA genes

description: Consensus sequences of 5S rRNA genes of the studied flax samples. For flax specimens possessing different classes of 5S rRNA genes sequences, the numbers of corresponding classes (cl) are shown below the name abbreviations. (TXT 31Â kb)
DOI: 10.6084/m9.figshare.5742879.v1
title: Additional file 3: of Evolution of blue-flowered species of genus Linum based on high-throughput sequencing of ribosomal RNA genes

description: Consensus sequences of 5S rRNA genes of the studied flax samples. For flax specimens possessing different classes of 5S rRNA genes sequences, the numbers of corresponding classes (cl) are shown below the name abbreviations. (TXT 31Â kb)
DOI: 10.6084/m9.figshare.5742876
title: Additional file 9: of De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus

description: The predicted ORFs. (XLSX 10574Â kb)
DOI: 10.6084/m9.figshare.5742876.v1
title: Additional file 9: of De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus

description: The predicted ORFs. (XLSX 10574Â kb)
DOI: 10.6084/m9.figshare.5742867
title: Additional file 2: of Evolution of blue-flowered species of genus Linum based on high-throughput sequencing of ribosomal RNA genes

description: Consensus ITS1-5.8S rDNA-ITS2 sequences of the studied flax samples. (TXT 27Â kb)
DOI: 10.6084/m9.figshare.5742867.v1
title: Additional file 2: of Evolution of blue-flowered species of genus Linum based on high-throughput sequencing of ribosomal RNA genes

description: Consensus ITS1-5.8S rDNA-ITS2 sequences of the studied flax samples. (TXT 27Â kb)
DOI: 10.6084/m9.figshare.5742858
title: Additional file 8: of De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus

description: The complete resulting annotation of the gray whale transcriptome assembly. (XLSX 13480Â kb)
DOI: 10.6084/m9.figshare.5742858.v1
title: Additional file 8: of De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus

description: The complete resulting annotation of the gray whale transcriptome assembly. (XLSX 13480Â kb)
DOI: 10.6084/m9.figshare.5742771
title: Additional file 1: of The effect of low intensity shockwave treatment (Li-SWT) on human myoblasts and mouse skeletal muscle

description: Numerical data (fold changes) from the in vitro and in vivo gene expression studies. The table shows the numerical data (fold changes) from the in vitro gene expression studies (Fig. 1 and Fig. 2) and the numerical data from the in vivo gene expression studies (Fig. 5, Fig. 6 and Fig. 7). (XLSX 58 kb)
DOI: 10.6084/m9.figshare.5742771.v1
title: Additional file 1: of The effect of low intensity shockwave treatment (Li-SWT) on human myoblasts and mouse skeletal muscle

description: Numerical data (fold changes) from the in vitro and in vivo gene expression studies. The table shows the numerical data (fold changes) from the in vitro gene expression studies (Fig. 1 and Fig. 2) and the numerical data from the in vivo gene expression studies (Fig. 5, Fig. 6 and Fig. 7). (XLSX 58 kb)
DOI: 10.6084/m9.figshare.5742738
title: Additional file 3: of Multiple functions of CREB-binding protein during postembryonic development: identification of target genes

description: Excel file S2. Details of 52 genes identified after k-mer clustering. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.5742738.v1
title: Additional file 3: of Multiple functions of CREB-binding protein during postembryonic development: identification of target genes

description: Excel file S2. Details of 52 genes identified after k-mer clustering. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.5742723
title: Additional file 2: of Multiple functions of CREB-binding protein during postembryonic development: identification of target genes

description: Excel file S1. Details of 1306 genes downregulated by CBP RNAi. (XLSX 495Â kb)
DOI: 10.6084/m9.figshare.5742723.v1
title: Additional file 2: of Multiple functions of CREB-binding protein during postembryonic development: identification of target genes

description: Excel file S1. Details of 1306 genes downregulated by CBP RNAi. (XLSX 495Â kb)
DOI: 10.6084/m9.figshare.5742717
title: Additional file 13: of De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus

description: GO analysis. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.5742717.v1
title: Additional file 13: of De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus

description: GO analysis. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.5742705
title: Additional file 1: of An additive effect of leading role in the organization between social participation and dementia onset among Japanese older adults: the AGES cohort study

description: Relationship between having a leadership positions and dementia onset in old-old. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.5742705.v1
title: Additional file 1: of An additive effect of leading role in the organization between social participation and dementia onset among Japanese older adults: the AGES cohort study

description: Relationship between having a leadership positions and dementia onset in old-old. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.5742684
title: Additional file 3: Table S1a. of Between Lake Baikal and the Baltic Sea: genomic history of the gateway to Europe

description: List of samples included in “Extended” dataset. Table S1b List of samples included in “Core” dataset. Table S1c List of samples included in “Ancient” dataset. Table S2 Results of ADMIXTURE for K = 9. Table S3 Results of ADMIXTURE for K = 6, 7, 8. Table S4 Results of f3 test. Table S5 Results of IBD sharing analysis in 1–3 cM and 4–10 cM bins. Table S6 Total amount of shared IBD between populations. Table S7 Standard residue of linear regression analysis of distance-IBD sharing. Table S8 Distance and shared IBD between pairs of populations. Table S9: Results of f3 outgroup test with ancient samples. (XLSX 482 kb)
DOI: 10.6084/m9.figshare.5742684.v1
title: Additional file 3: Table S1a. of Between Lake Baikal and the Baltic Sea: genomic history of the gateway to Europe

description: List of samples included in “Extended” dataset. Table S1b List of samples included in “Core” dataset. Table S1c List of samples included in “Ancient” dataset. Table S2 Results of ADMIXTURE for K = 9. Table S3 Results of ADMIXTURE for K = 6, 7, 8. Table S4 Results of f3 test. Table S5 Results of IBD sharing analysis in 1–3 cM and 4–10 cM bins. Table S6 Total amount of shared IBD between populations. Table S7 Standard residue of linear regression analysis of distance-IBD sharing. Table S8 Distance and shared IBD between pairs of populations. Table S9: Results of f3 outgroup test with ancient samples. (XLSX 482 kb)
DOI: 10.6084/m9.figshare.5742681
title: Additional file 11: of De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus

description: Complete read counts. (XLSX 7180Â kb)
DOI: 10.6084/m9.figshare.5742681.v1
title: Additional file 11: of De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus

description: Complete read counts. (XLSX 7180Â kb)
DOI: 10.6084/m9.figshare.5742675
title: Additional file 1: of Intergenic disease-associated regions are abundant in novel transcripts

description: Supplementary Tables S1 to S3 provide genomic regions and annotation for captured regions and transcripts. Tables S4 and S4 provide information on PCR validation and independent functional validation, respectively. Tables S6 and S7 provide genomic information on captured regions and transcripts specific for melanoma. Table S8 provides information on used samples. (XLS 18124 kb)
DOI: 10.6084/m9.figshare.5742675.v1
title: Additional file 1: of Intergenic disease-associated regions are abundant in novel transcripts

description: Supplementary Tables S1 to S3 provide genomic regions and annotation for captured regions and transcripts. Tables S4 and S4 provide information on PCR validation and independent functional validation, respectively. Tables S6 and S7 provide genomic information on captured regions and transcripts specific for melanoma. Table S8 provides information on used samples. (XLS 18124 kb)
DOI: 10.6084/m9.figshare.5742669
title: Additional file 1 of Characterization of migraineurs presenting interictal widespread pressure hyperalgesia identified using a tender point count: a cross-sectional study

description: Original data. (XLSX 247Â kb)
DOI: 10.6084/m9.figshare.5742669.v1
title: Additional file 1 of Characterization of migraineurs presenting interictal widespread pressure hyperalgesia identified using a tender point count: a cross-sectional study

description: Original data. (XLSX 247Â kb)
DOI: 10.6084/m9.figshare.5742663
title: Additional file 2: of A database of human genes and a gene network involved in response to tick-borne encephalitis virus infection

description: Supplementary data for creation of the interactive version of gene network in Cytoscape. (XGMML 224Â kb)
DOI: 10.6084/m9.figshare.5742663.v1
title: Additional file 2: of A database of human genes and a gene network involved in response to tick-borne encephalitis virus infection

description: Supplementary data for creation of the interactive version of gene network in Cytoscape. (XGMML 224Â kb)
DOI: 10.6084/m9.figshare.5742651
title: Additional file 2: of Differential gene expression in response to Fusarium oxysporum infection in resistant and susceptible genotypes of flax (Linum usitatissimum L.)

description: Expression profiles of genes for selected gene ontology (GO) terms in susceptible and resistant flax genotypes in response to Fusarium oxysporum infection. (XLSX 861Â kb)
DOI: 10.6084/m9.figshare.5742651.v1
title: Additional file 2: of Differential gene expression in response to Fusarium oxysporum infection in resistant and susceptible genotypes of flax (Linum usitatissimum L.)

description: Expression profiles of genes for selected gene ontology (GO) terms in susceptible and resistant flax genotypes in response to Fusarium oxysporum infection. (XLSX 861Â kb)
DOI: 10.6084/m9.figshare.5742633
title: Additional file 1: Table S1. of A database of human genes and a gene network involved in response to tick-borne encephalitis virus infection

description: Human genes/proteins (51) that had direct physical interactions with TBE viral particle, TBEV proteins or RNA. Table S2. Human genes (76) encoding mRNAs (or proteins) that were up- or down-regulated in response to TBEV infection. Table S3. Human genes (9) that possessed allelic variants associated with susceptibility or resistance to TBEV infection. Table S4. Human genes (6) encoding proteins that were required for inhibitory effect of other proteins against TBEV or attenuated its antiviral activity. Table S5. Human genes (6): knockout of these genes in mice increased mortality rates or effected the other clinical manifestations of the disease. Table S6. All genes from the catalog (140 genes). Table S7. Direct physical interactions (25) that were obtained from STRING and passed manual verification. Table S8. Genes/proteins from the catalog (41) that had one or more pairwise interactions with human genes/proteins within the network. (XLSX 151Â kb)
DOI: 10.6084/m9.figshare.5742633.v1
title: Additional file 1: Table S1. of A database of human genes and a gene network involved in response to tick-borne encephalitis virus infection

description: Human genes/proteins (51) that had direct physical interactions with TBE viral particle, TBEV proteins or RNA. Table S2. Human genes (76) encoding mRNAs (or proteins) that were up- or down-regulated in response to TBEV infection. Table S3. Human genes (9) that possessed allelic variants associated with susceptibility or resistance to TBEV infection. Table S4. Human genes (6) encoding proteins that were required for inhibitory effect of other proteins against TBEV or attenuated its antiviral activity. Table S5. Human genes (6): knockout of these genes in mice increased mortality rates or effected the other clinical manifestations of the disease. Table S6. All genes from the catalog (140 genes). Table S7. Direct physical interactions (25) that were obtained from STRING and passed manual verification. Table S8. Genes/proteins from the catalog (41) that had one or more pairwise interactions with human genes/proteins within the network. (XLSX 151Â kb)
DOI: 10.6084/m9.figshare.5742630
title: Additional file 3: of Repositioning drugs by targeting network modules: a Parkinsonâ s disease case study

description: The Protein-Protein Interactions and drug-target regulations in T moduleâ s network. (XLSX 98 kb)
DOI: 10.6084/m9.figshare.5742630.v1
title: Additional file 3: of Repositioning drugs by targeting network modules: a Parkinsonâ s disease case study

description: The Protein-Protein Interactions and drug-target regulations in T moduleâ s network. (XLSX 98 kb)
DOI: 10.6084/m9.figshare.5742627
title: Additional file 1: of Differential gene expression in response to Fusarium oxysporum infection in resistant and susceptible genotypes of flax (Linum usitatissimum L.)

description: Genes for which expression was specifically changed in resistant genotypes of flax in response to Fusarium oxysporum infection. (XLSX 9584Â kb)
DOI: 10.6084/m9.figshare.5742627.v1
title: Additional file 1: of Differential gene expression in response to Fusarium oxysporum infection in resistant and susceptible genotypes of flax (Linum usitatissimum L.)

description: Genes for which expression was specifically changed in resistant genotypes of flax in response to Fusarium oxysporum infection. (XLSX 9584Â kb)
DOI: 10.6084/m9.figshare.5742612
title: Additional file 2: of Repositioning drugs by targeting network modules: a Parkinsonâ s disease case study

description: The Protein-Protein Interactions and drug-target regulations in Br moduleâ s network. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.5742612.v1
title: Additional file 2: of Repositioning drugs by targeting network modules: a Parkinsonâ s disease case study

description: The Protein-Protein Interactions and drug-target regulations in Br moduleâ s network. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.5742594
title: Additional file 1: of Repositioning drugs by targeting network modules: a Parkinsonâ s disease case study

description: 1246 (1201 unique drugbankID) candidate drugs for drug repositioning that targeted to PD modules. (XLSX 136 kb)
DOI: 10.6084/m9.figshare.5742594.v1
title: Additional file 1: of Repositioning drugs by targeting network modules: a Parkinsonâ s disease case study

description: 1246 (1201 unique drugbankID) candidate drugs for drug repositioning that targeted to PD modules. (XLSX 136 kb)
DOI: 10.6084/m9.figshare.5742588
title: Additional file 1: of A general approach to risk modeling using partial surrogate markers with application to perioperative acute kidney injury

description: R Code. (R 6Â kb)
DOI: 10.6084/m9.figshare.5742588.v1
title: Additional file 1: of A general approach to risk modeling using partial surrogate markers with application to perioperative acute kidney injury

description: R Code. (R 6Â kb)
DOI: 10.6084/m9.figshare.5742573
title: Additional file 1: Table S1. of Novel human microbe-disease association prediction using network consistency projection

description: Prediction of all the unknown microbe-disease pairs. (XLSX 232Â kb)
DOI: 10.6084/m9.figshare.5742573.v1
title: Additional file 1: Table S1. of Novel human microbe-disease association prediction using network consistency projection

description: Prediction of all the unknown microbe-disease pairs. (XLSX 232Â kb)
DOI: 10.6084/m9.figshare.5742543
title: Additional file 1: Table S1. of Highly accurate sequence imputation enables precise QTL mapping in Brown Swiss cattle

description: Breed codes and number of individuals per breed within the fifth run of the 1000 Bull Genomes Project. Table S2. Average number of SNPs per minor allele frequency class in S5, S6 and S7. Table S3. Imputation accuracy per breed in S1. Table S4. Imputation accuracy per minor allele frequency class in S5, S6, S7. Table S5. p-values and SNPs with Bonferroni corrected significant association for FCearly. Chr is the chromosome and Pos is the position of the SNP, they correspond to UMD3.1. R2 is an imputation quality measure provided by Minimac and P is the p-value from the genome-wide association study. Table S6. p-values and SNPs with Bonferroni corrected significant association for FClate. Chr is the chromosome and Pos is the position of the SNP, they correspond to UMD3.1. R2 is an imputation quality measure provided by Minimac and P is the p-value from the genome-wide association study. (XLSX 169Â kb)
DOI: 10.6084/m9.figshare.5742543.v1
title: Additional file 1: Table S1. of Highly accurate sequence imputation enables precise QTL mapping in Brown Swiss cattle

description: Breed codes and number of individuals per breed within the fifth run of the 1000 Bull Genomes Project. Table S2. Average number of SNPs per minor allele frequency class in S5, S6 and S7. Table S3. Imputation accuracy per breed in S1. Table S4. Imputation accuracy per minor allele frequency class in S5, S6, S7. Table S5. p-values and SNPs with Bonferroni corrected significant association for FCearly. Chr is the chromosome and Pos is the position of the SNP, they correspond to UMD3.1. R2 is an imputation quality measure provided by Minimac and P is the p-value from the genome-wide association study. Table S6. p-values and SNPs with Bonferroni corrected significant association for FClate. Chr is the chromosome and Pos is the position of the SNP, they correspond to UMD3.1. R2 is an imputation quality measure provided by Minimac and P is the p-value from the genome-wide association study. (XLSX 169Â kb)
DOI: 10.6084/m9.figshare.5742456
title: Additional file 8: of Differential expression of NBS-LRR-encoding genes in the root transcriptomes of two Solanum phureja genotypes with contrasting resistance to Globodera rostochiensis

description: List of candidate S. phureja NBS-LRR-encoding genes providing resistance to G. rostochiensis. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.5742456.v1
title: Additional file 8: of Differential expression of NBS-LRR-encoding genes in the root transcriptomes of two Solanum phureja genotypes with contrasting resistance to Globodera rostochiensis

description: List of candidate S. phureja NBS-LRR-encoding genes providing resistance to G. rostochiensis. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.5742450
title: Additional file 2: of CNN-BLPred: a Convolutional neural network based predictor for Î˛-Lactamases (BL) and their classes

description: Independent Dataset 2 (ZIP 604Â kb)
DOI: 10.6084/m9.figshare.5742450.v1
title: Additional file 2: of CNN-BLPred: a Convolutional neural network based predictor for Î˛-Lactamases (BL) and their classes

description: Independent Dataset 2 (ZIP 604Â kb)