cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14035510
title: Datasets for phylogenetic analyses and phylogenetic trees for: Genetic barcodes for species identification and phylogenetic estimation in ghost spiders (Araneae: Anyphaenidae: Amaurobioidinae). Invertebrate Systematics, 2024

description: We combined the COI sequence data with legacy multigene sequence data to create a new, taxon-rich phylogeny for the Amaurobioidinae. We used sequences for four loci that have been used in previous studies on the subfamily: two mitochondrial loci, COI (658bp) and ribosomal subunit 16S (16S, 410bp); and two nuclear loci, Histone H3 (H3, 327bp) and ribosomal subunit 28S (28S, 839bp). We complemented the Amaurobioidinae data with sequences from several non-amaurobioidine anyphaenids and two clubionids as outgroups. Sequence alignment was performed using the MAFFT (ver. 7.308) plugin in Geneious, allowing MAFFT to automatically select an appropriate alignment strategy based on the properties of each locus, or with the online MAFFT server (https://mafft.cbrc.jp), which consistently selected the L-INS-i algorithm. Finally, alignments of the four loci were concatenated to construct a 2234 bp multigene sequence matrix containing 692 taxa, with about 55% missing/gap data (“full” matrix henceforth). To ensure that excessive missing data did not affect the resulting topology, we also constructed a reduced matrix by removing additional COI-only specimens so that each species and morphotype was represented by just one or two specimens for which all loci were available (where possible). After realignment, this reduced matrix was 2235 bp long, included 167 taxa, and had about 22% missing/gap data (“reduced” matrix henceforth). Phylogenetic analyses under maximum likelihood, including model selection, were then conducted with IQ-TREE 2. We performed phylogenetic analyses on both concatenated matrices (the full matrix and the reduced matrix) and on each individual locus. For model selection, we provided an initial scheme that partitioned the matrix by locus, and further partitioned the protein-coding loci (COI and H3) by codon position. We used ModelFinder and searched for the best partition scheme, all in IQ-TREE. The best models (partitions) for the full dataset were: GTR+F+I+G4 (16S), GTR+F+I+I+R4 (28S), TVM+F+I+I+R2 (COI-1), TIM2+F+R4 (COI-2), GTR+F+R5 (COI-3), TVMe+G4 (H3-1-H3-2), SYM+G4 (H3-3); and for the reduced dataset: GTR+F+I+G4 (16S), GTR+F+I+G4: (28S), GTR+F+I+G4: (COI-2), GTR+F+I+G4: (COI-3), TVM+F+I+G4: (COI-1, H3-2), GTR+F+I+G4: (H3-1), GTR+F+I+G4: (H3-3). For each dataset, once the best models and partitions were defined, we executed 10 independent replicates of tree calculations followed by 1000 ultrafast bootstrap replicates, and the replicate reaching the maximum likelihood was chosen. Phylogenetic analyses under parsimony were made with TNT, under equal weights, using the “new technology” search with default values, asking for 10 independent hits to the minimal length, and submitting the resulting trees to a round of TBR branch swapping.
DOI: 10.5281/zenodo.14035511
title: Datasets for phylogenetic analyses and phylogenetic trees for: Genetic barcodes for species identification and phylogenetic estimation in ghost spiders (Araneae: Anyphaenidae: Amaurobioidinae). Invertebrate Systematics, 2024

description: We combined the COI sequence data with legacy multigene sequence data to create a new, taxon-rich phylogeny for the Amaurobioidinae. We used sequences for four loci that have been used in previous studies on the subfamily: two mitochondrial loci, COI (658bp) and ribosomal subunit 16S (16S, 410bp); and two nuclear loci, Histone H3 (H3, 327bp) and ribosomal subunit 28S (28S, 839bp). We complemented the Amaurobioidinae data with sequences from several non-amaurobioidine anyphaenids and two clubionids as outgroups. Sequence alignment was performed using the MAFFT (ver. 7.308) plugin in Geneious, allowing MAFFT to automatically select an appropriate alignment strategy based on the properties of each locus, or with the online MAFFT server (https://mafft.cbrc.jp), which consistently selected the L-INS-i algorithm. Finally, alignments of the four loci were concatenated to construct a 2234 bp multigene sequence matrix containing 692 taxa, with about 55% missing/gap data (“full” matrix henceforth). To ensure that excessive missing data did not affect the resulting topology, we also constructed a reduced matrix by removing additional COI-only specimens so that each species and morphotype was represented by just one or two specimens for which all loci were available (where possible). After realignment, this reduced matrix was 2235 bp long, included 167 taxa, and had about 22% missing/gap data (“reduced” matrix henceforth). Phylogenetic analyses under maximum likelihood, including model selection, were then conducted with IQ-TREE 2. We performed phylogenetic analyses on both concatenated matrices (the full matrix and the reduced matrix) and on each individual locus. For model selection, we provided an initial scheme that partitioned the matrix by locus, and further partitioned the protein-coding loci (COI and H3) by codon position. We used ModelFinder and searched for the best partition scheme, all in IQ-TREE. The best models (partitions) for the full dataset were: GTR+F+I+G4 (16S), GTR+F+I+I+R4 (28S), TVM+F+I+I+R2 (COI-1), TIM2+F+R4 (COI-2), GTR+F+R5 (COI-3), TVMe+G4 (H3-1-H3-2), SYM+G4 (H3-3); and for the reduced dataset: GTR+F+I+G4 (16S), GTR+F+I+G4: (28S), GTR+F+I+G4: (COI-2), GTR+F+I+G4: (COI-3), TVM+F+I+G4: (COI-1, H3-2), GTR+F+I+G4: (H3-1), GTR+F+I+G4: (H3-3). For each dataset, once the best models and partitions were defined, we executed 10 independent replicates of tree calculations followed by 1000 ultrafast bootstrap replicates, and the replicate reaching the maximum likelihood was chosen. Phylogenetic analyses under parsimony were made with TNT, under equal weights, using the “new technology” search with default values, asking for 10 independent hits to the minimal length, and submitting the resulting trees to a round of TBR branch swapping.
DOI: 10.15468/dl.thdpvg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"4554405","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024388-241024112534372/datasets/export for details.
DOI: 10.15468/dl.h6sse2
title: Occurrence Download

description: A dataset containing 565 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Pternopetalum tanakae (Franch. & Sav.) Hand.-Mazz.)",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 }
 ]
}

 The dataset includes 565 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024389-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hvsgvd
title: Occurrence Download

description: A dataset containing 333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Japan",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Larus hyperboreus Gunnerus, 1767, Larus glaucescens J.F.Naumann, 1840, Larus canus Linnaeus, 1758, Stercorarius parasiticus (Linnaeus, 1758), Hydrobates monorhis (Swinhoe, 1867), Ardenna tenuirostris (Temminck, 1836), Stercorarius maccormicki H.Saunders, 1893, Hydrobates matsudairae (Kuroda & Nm, 1922))",
 "Year 1970-2000"
 ]
}

 The dataset includes 333 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024390-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8njchu
title: Occurrence Download

description: A dataset listing the 17 species recorded in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN",
 "TaxonKey is one of (Atractylodes carlinoides (Hand.-Mazz.) Kitam., Atractylodes lancea (Thunb.) DC., Atractylodes macrocephala Koidz., Atractylodes koreana (Nakai) Kitam., Atractylodes japonica Koidz. ex Kitam., Atractylodes chinensis var. liaotungensis (Kitag.) Y.C.Chu, Atractylodes chinensis var. chinensis, Atractylodes chinensis f. simplicifolia (Loes.) Y.C.Chu, Atractylodes chinensis (Bunge) Koidz., Atractylodes ovata (Thunb.) DC., Atractylodes lancea subsp. luotianensis S.L.Hu & X.F.Feng, Atractylodes lancea var. chinensis (Bunge) Kitam., Atractylodes lancea var. lancea, Atractylodes lancea var. simplicifolia (Loes.) Kitam., Atractylodes ovata var. ternata Kom., Atractylodes ovata var. ternata (Kom.) Koidz., Atractylodes ovata f. amurensis Freyn ex Kom., Atractylodes ovata var. ovata, Atractylodes ovata var. amurensis Freyn ex Kom., 1907, Atractylodes ovata var. amurensis Freyn, Atractylodes ovata f. ovata, Atractylodes ovata f. amurensis Freyn, Atractylodes chinensis f. chinensis, Atractylodes chinensis f. quinqueloba (A.I.Baranov & Skvortsov) Y.C.Chu, Atractylodes chinensis var. simplicifolia (Loes.) Kitag.)"
 ]
}

 The dataset's 17 records were derived from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024314-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/69700b05a7bc103c2ba17b38af44b8d3
title: Long-term composited Modified Normalized Difference Water Index (MNDWI) for the greater Phoenix, Arizona, USA, metropolitan area and the surrounding Sonoran desert derived from annual and seasonal Landsat imagery, 1998 to 2023

description: Abstract
========

This data package consists of multiple decades of modified normalized difference water index (MNDWI) raster data across the Central Arizona-Phoenix Long-Term Ecological Research (CAP LTER) study area within metropolitan Phoenix, Arizona (USA), temporally aggregated by year and by four meteorological seasons (Winter, Spring, Summer, Fall). By providing a metric by which to reliably identify bodies of open water, these MNDWI data are intended to facilitate analyses of land-based environmental variables (e.g., urbanization, vegetation, land surface temperature) and can also be used to track long-term and seasonal change in the coarse extent of open water as a land-cover type. MNDWI was derived, following the methods of Xu (2006), from annual and seasonal composites of 30-m resolution Landsat 5-9 Level-2 Surface Reflectance imagery. All imagery retrieval and data processing were completed with Google Earth Engine (Gorelick et al. 2017) and program R. A complete description of data processing methods, including the aggregation of imagery by year and season and the calculation of the spectral index, can be found in the data package metadata (see \'Methods and Protocols\') and accompanying Javascript code.

**Citations:**

- Gorelick N, Hancher M, Dixon M, et al. (2017) Google Earth Engine: Planetary-scale geospatial analysis for everyone. Remote Sensing of Environment 202:18--27. 
- Xu, H. (2006). Modification of normalised difference water index (NDWI) to enhance open water features in remotely sensed imagery. *International Journal of Remote Sensing*, *27*(14), 3025--3033.
DOI: 10.6084/m9.figshare.29125666
title: Formulating the phenomenon of ‘hoarded tour guide knowledge’: the case of Hagia Sophia, Istanbul

description: Tour guides’ proprietary capital is the knowledge they disseminate during tours, and some tend to hoard it from competitors due to concerns of intense rivalry. However, prior research has largely overlooked the content and competitive potential of this knowledge. To address the research gap, this study employs the theoretical framework of tacit knowledge and uses an embedded mixed-methods design. Therefore, 42 interviews with tour guides, questionaries with 15 scholars, reviews with 189 studies, and questionaries with 419 tour guides were respectively conducted. Thus, tour guide knowledge which provides a competitive advantage was identified, the accuracy of this knowledge was evaluated, and how well this knowledge was recognized among competitors was assessed. The findings reveal that only a minority of tour guides’ knowledge is both accurate and competitively advantageous. This knowledge also transcends the existing approaches to the topic, thus concluding the study with a novel concept: ‘Hoarded tour guide knowledge’.
DOI: 10.6084/m9.figshare.29125666.v1
title: Formulating the phenomenon of ‘hoarded tour guide knowledge’: the case of Hagia Sophia, Istanbul

description: Tour guides’ proprietary capital is the knowledge they disseminate during tours, and some tend to hoard it from competitors due to concerns of intense rivalry. However, prior research has largely overlooked the content and competitive potential of this knowledge. To address the research gap, this study employs the theoretical framework of tacit knowledge and uses an embedded mixed-methods design. Therefore, 42 interviews with tour guides, questionaries with 15 scholars, reviews with 189 studies, and questionaries with 419 tour guides were respectively conducted. Thus, tour guide knowledge which provides a competitive advantage was identified, the accuracy of this knowledge was evaluated, and how well this knowledge was recognized among competitors was assessed. The findings reveal that only a minority of tour guides’ knowledge is both accurate and competitively advantageous. This knowledge also transcends the existing approaches to the topic, thus concluding the study with a novel concept: ‘Hoarded tour guide knowledge’.
DOI: 10.6084/m9.figshare.29997842
title: Staff Attitudes Towards Individuals with Borderline Personality Disorder: Can Formulation Reverse the Stigma? An Experimental, Vignette-Based Study

description: Staff members working in mental health settings may experience stigmatising attitudes towards individuals with a personality disorder diagnosis. Little is known about how such attitudes may be modified or improved. The purpose of the current study was to investigate the impact of a written psychological formulation on attitudes towards an individual with a diagnosis of personality disorder. The current study had an experimental, vignette-based, between-subjects design and utilised online survey approach. Multidisciplinary staff members (<i>n</i> = 141) from two large mental health trusts in the East of England took part in the study being randomly assigned to either the formulation or Non-formulation condition. Both groups read a short extract about the same fictitious patient. Participants in the formulation condition also read a psychological formulation regarding the patient’s presenting difficulties. Attitudes and causal attributions were compared between the two groups. The results of the study suggest that the addition of a psychological formulation, at least one structured along the lines of the 5-P’s framework, did not significantly alter participants’ attitudes towards the individual within the vignette in most domains measured. One domain of the Causal Attributions measure (‘Stability’) showed a change in the direction of increased stigma.
DOI: 10.6084/m9.figshare.29997842.v1
title: Staff Attitudes Towards Individuals with Borderline Personality Disorder: Can Formulation Reverse the Stigma? An Experimental, Vignette-Based Study

description: Staff members working in mental health settings may experience stigmatising attitudes towards individuals with a personality disorder diagnosis. Little is known about how such attitudes may be modified or improved. The purpose of the current study was to investigate the impact of a written psychological formulation on attitudes towards an individual with a diagnosis of personality disorder. The current study had an experimental, vignette-based, between-subjects design and utilised online survey approach. Multidisciplinary staff members (<i>n</i> = 141) from two large mental health trusts in the East of England took part in the study being randomly assigned to either the formulation or Non-formulation condition. Both groups read a short extract about the same fictitious patient. Participants in the formulation condition also read a psychological formulation regarding the patient’s presenting difficulties. Attitudes and causal attributions were compared between the two groups. The results of the study suggest that the addition of a psychological formulation, at least one structured along the lines of the 5-P’s framework, did not significantly alter participants’ attitudes towards the individual within the vignette in most domains measured. One domain of the Causal Attributions measure (‘Stability’) showed a change in the direction of increased stigma.
DOI: 10.6084/m9.figshare.30058035
title: Interprofessional Communication in Psychiatric Units: Barriers, Prerequisites, and Its Role in Shaping Person-Centered Practices – A Vignette Study

description: Interprofessional communication is fundamental in healthcare, particularly where patient needs demand coordination and shared understanding. It fosters role clarity, care coordination, and team cohesion. However, unclear hierarchies, heavy workloads, and interpersonal conflicts can disrupt collaboration, affecting professional relationships and patient outcomes. This study explores experiences of and reflections on prerequisites for and barriers to interprofessional communication in psychiatric outpatient settings. While previous research has described barriers, few studies have examined how communication itself constitutes professional roles, boundaries, and collaborative practices. To address this gap, the study applies the Four Flows framework—membership negotiation, self-structuring, activity coordination, and institutional positioning—as an interpretive lens. Using vignettes and semi-structured interviews with 11 clinicians in psychiatric outpatient units, the study analyzed how communication shapes and is shaped by interprofessional collaboration. Analysis identified four key categories: systemic barriers and organizational challenges; social dynamics and interprofessional relationships; supportive leadership and team culture; and patient focus and involvement. These categories intersect across the Four Flows, illustrating how communication acts as a structuring process rather than a neutral tool. The overarching theme,” From Separate Paths to Shared Care,” highlights how clinicians enact person-centered collaboration through communicative practice in psychiatric outpatient settings.
DOI: 10.6084/m9.figshare.30058035.v1
title: Interprofessional Communication in Psychiatric Units: Barriers, Prerequisites, and Its Role in Shaping Person-Centered Practices – A Vignette Study

description: Interprofessional communication is fundamental in healthcare, particularly where patient needs demand coordination and shared understanding. It fosters role clarity, care coordination, and team cohesion. However, unclear hierarchies, heavy workloads, and interpersonal conflicts can disrupt collaboration, affecting professional relationships and patient outcomes. This study explores experiences of and reflections on prerequisites for and barriers to interprofessional communication in psychiatric outpatient settings. While previous research has described barriers, few studies have examined how communication itself constitutes professional roles, boundaries, and collaborative practices. To address this gap, the study applies the Four Flows framework—membership negotiation, self-structuring, activity coordination, and institutional positioning—as an interpretive lens. Using vignettes and semi-structured interviews with 11 clinicians in psychiatric outpatient units, the study analyzed how communication shapes and is shaped by interprofessional collaboration. Analysis identified four key categories: systemic barriers and organizational challenges; social dynamics and interprofessional relationships; supportive leadership and team culture; and patient focus and involvement. These categories intersect across the Four Flows, illustrating how communication acts as a structuring process rather than a neutral tool. The overarching theme,” From Separate Paths to Shared Care,” highlights how clinicians enact person-centered collaboration through communicative practice in psychiatric outpatient settings.
DOI: 10.15468/dl.n2m4a7
title: Occurrence Download

description: A dataset containing 197 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Branta hutchinsii × leucopsis"
 ]
}

 The dataset includes 197 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009597-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xsxdup
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Damasonium damasonium (L.) Asch. & Graebn."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009598-250127130748423/datasets/export for details.
DOI: 10.15468/dl.q6mfhy
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trifolium repens Thunb."
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009599-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ent7dh
title: Occurrence Download

description: A dataset containing 551 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fungi",
 "Geometry POLYGON ((-98.77778 19.24333, -98.62444 19.24333, -98.62444 19.46722, -98.77778 19.46722, -98.77778 19.24333))",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material citation)"
 ]
 }
 }
 ]
}

 The dataset includes 551 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009602-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gtu895
title: Occurrence Download

description: A dataset containing 248 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polylepis pepei B.B.Simpson"
 ]
}

 The dataset includes 248 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009603-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.