cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6530771.v1
title: Supplementary Material for: Multidisciplinary Late Effects Clinics for Childhood Cancer Survivors in Germany - a Two-Center Study

description: Background: Childhood cancer survivors are at risk for therapy-related sequelae and, therefore, require longterm follow-up. At 2 university hospitals in Germany collaborative multidisciplinary late effects clinics were installed to provide specialized care and to evaluate the current health status of these patients in a clinical setting. Patients and Methods: Every patient who visited the late effects clinics at the university hospital in Lübeck and Erlangen over a period of 3 years and met the inclusion criteria was included in the study. Patients’ characteristics as well as cancer diagnosis, treatment related factors and the prevalence of chronic health conditions were assessed. Results: 220 patients attended the late effects clinics during the observation period. The median follow-up period was 16 years (range 5–45 years). In total over 64% of the patients were affected by at least 1 chronic health condition, including endocrine disruptions in 19.1% of the patients. Moreover, secondary neoplasms occurred in 9.1% of the study participants. Conclusion: German childhood cancer survivors are affected by multiple therapy-related sequelae. A comprehensive network of late effects clinics should be established to ensure specialized and risk-adapted care for every childhood cancer survivor in Germany.
DOI: 10.6084/m9.figshare.14414138.v1
title: Supplementary Material for: Characteristics and Outcomes of Endoscopies before and during the COVID-19 Pandemic in New York

description: <b><i>Introduction:</i></b> The COVID-19 pandemic drastically changed hospital workflows. This study aimed to characterize differences in gastrointestinal endoscopies in the New York metropolitan region before, during, and after the first wave of the pandemic. <b><i>Methods:</i></b> Across 3 hospitals, we compared demographics, indications, and yield of endoscopies before and after March 16, 2020, the date on which elective procedures were canceled, as well as a recovery period for 5 months after they were resumed. <b><i>Results:</i></b> A total of 9,401 procedures before and 332 procedures during the first wave were performed. Females comprised 57 and 44% of patients (<i>p</i> &lt; 0.01), respectively. There was a decline in the proportion of Black (15 vs. 7%, <i>p</i> &lt; 0.02) and Hispanic patients (29 vs. 16%, <i>p</i> &lt; 0.02) undergoing outpatient procedures. There was a significant rise in urgent indications such as bleeding and jaundice. There was an increase in the diagnostic yield of all esophagogastroduodenoscopies for bleeding (<i>p</i> &lt; 0.01) and of outpatient endoscopic ultrasounds for malignancy (<i>p</i> = 0.01), but no increase in yield of inpatient colonoscopy for bleeding. A review of 7,475 procedures during the recovery period showed a return to many nonurgent indications, but still showed decreased proportions of Hispanic and male patients compared to the prepandemic period. <b><i>Discussion/Conclusion:</i></b> Lower proportions of Black and Hispanic patients underwent outpatient endoscopies during and after the first wave. The proportion of procedures done for emergent indications and their diagnostic yield increased during the pandemic, suggesting a higher threshold to perform endoscopy. In resource-sparing conditions, clinicians should pay attention to thresholds to perform colonoscopy for bleeding and to racial disparities in outpatient healthcare access.
DOI: 10.6084/m9.figshare.28791806.v1
title: <b>Optimized Artificial Neural Network-Based Mathematical Model and Software Application for Predicting Raw Mix Lime Saturation Factor for High-Quality Cement Production</b>

description: This study develops LSF predictive models by employing artificial neural networks (ANN) optimized with particle swarm optimization (PSO), Levenberg–Marquardt (LM), and genetic algorithms (GA), using model dataset of two thousand four hundred and sixty data points. Dependable variables selected were lime, silica, alumina, and iron oxide. To enhance the practicality and ease of use, the models were converted into mathematical equations and further integrated into software application. The models' performance was compared using verification dataset of one hundred data points and LM-ANN model presented the best performance and strongly recommended for LSF estimation.
DOI: 10.17632/3mvtn2bzy6
title: A program to compute exact hydrogenic radial integrals and Einstein coefficients

description: Abstract An exact expression for the dipole radial integral of hydrogen has been given by Gordon [Ann. Phys. 2 (1929) 1031]. It contains two hypergeometric functions F (a, b ; c ; x), which are difficult to calculate directly, when the (negative) integers a, b are large, as in the case of high Rydberg states of hydrogenic ions. We have derived a simple method [D. Hoang-Binh, Astron. Astrophys. 238 (1990) 449], using a recurrence relation to calculate exactly F, starting from two initial values, which ... Title of program: ba5.2 Catalogue Id: ADUU_v2_0 Nature of problem Exact calculation of atomic data. Versions of this program held in the CPC repository in Mendeley Data ADUU_v1_0; ba5; 10.1016/j.cpc.2004.11.005 ADUU_v2_0; ba5.2; 10.1016/j.cpc.2009.06.003 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.6084/m9.figshare.8813174.v1
title: Top ten R packages in ecology and evolution

description: A list of the functions and associated descriptions for the top 10 most downloaded R packages in ecology and evolution.<br>The R packages 'packagefinder' and 'dlstats' were used to compile these rankings and descriptions. Code published to Zenodo. <br>https://zenodo.org/account/settings/github/repository/cjlortie/R_package_chooser_checklist<br>
DOI: 10.6084/m9.figshare.14706933.v1
title: Data

description: Full data
DOI: 10.6084/m9.figshare.25102481.v1
title: Supplementary Material for: 5-Aminosalicylic Acid-Induced Liver Injury in a Patient with Ulcerative Colitis: A Case Report

description: <b><i>Introduction:</i></b> Drug-induced liver injury (DILI) associated with 5-aminosalicylic acid (5-ASA) is a rare but potentially life-threatening adverse event. <b><i>Case Presentation:</i></b> We report the case of a 58-year-old woman with ulcerative colitis who developed DILI after initiating maintenance therapy with the multimatrix system 5-ASA. The patient presented with grade 4 liver enzyme elevation on day 98 after initiating 5-ASA and was admitted to the hospital. Blood tests revealed the mixed liver injury, and imaging studies showed no abnormalities except for mild lymph node enlargement. Liver biopsy revealed acute lobular hepatitis with interfacial activity. The patient’s score on the International Autoimmune Hepatitis Group 1999 revised scoring system was a total score of 10, causing a suspicion for the diagnosis of autoimmune hepatitis. The DDW-J 2004 scale calculated a total score of six, indicating a high probability of DILI. We suspected DILI due to 5-ASA, and the 5-ASA formulations were discontinued. The patient was treated with ursodeoxycholic acid and neominophagen C, and her liver function gradually improved without steroid treatment. Finally, we definitively diagnosed DILI based on the pathological findings and clinical course after discontinuation of 5-ASA. <b><i>Conclusion:</i></b> This case highlights the importance of monitoring liver function in patients receiving 5-ASA therapy.
DOI: 10.6084/m9.figshare.14213486.v1
title: Multilocus genotypes of Fremont cottonwood

description: Microsatellite genotypes of Fremont cottonwoods in the Verde River area of Arizona.
DOI: 10.6084/m9.figshare.19426739.v6
title: Dataset for the PNAS article titled 'Accurate Virus Identification with Interpretable Raman Signatures by Machine Learning'

description: <strong>About Dataset</strong> <br> Context The dataset is acquired via the VIRRION platform designed for label-free capture and enrichment of viruses. It consists of Raman spectra of three groups of RNA viruses, including human respiratory viruses (influenza A H1N1 and H3N2, influenza B, rhinovirus, respiratory syncytial virus (RSV)), avian respiratory viruses (influenza A H5N2 and H7N2, infectious bronchitis virus (IBV), reovirus), and human enteroviruses (Coxsackievirus B type 1 and 3 (CVB1, CVB3), enteroviruses EV70 and EV71). Content The dataset contains 10 sample Raman Spectra for each virus type/subtype in “virus_spectra.zip”, and visualization of the spectra in “virus_spectra_plots.zip”. In each txt file that corresponds to one Raman spectrum, the columns are: wavenumber intensity More data and machine learning source code More data are available upon request, for research purposes only. Please email <strong>mtterrones@gmail.com </strong>(Mauricio) with a short description about the purpose of usage along with your request for more data. The machine learning source code for our work is available via the GitHub Repo below: https://github.com/karenyyy/Accurate-Virus-Identification-with-Interpretable-Raman-Signatures-by-Machine-Learning-.git
DOI: 10.6084/m9.figshare.3561309.v1
title: Appendix B. Simulation results: log-linear trend data analyzed with the Markov and generalized Markov models.

description: Simulation results: log-linear trend data analyzed with the Markov and generalized Markov models.
DOI: 10.17632/5bb8t54vpc
title: Dataset-Catena-Liu

description: The raw data of the manuscript entitled “Experimental study on the change rule of shear strength of undisturbed root-soil composite with soil depth: A case study on Malus halliana Koehne”.
DOI: 10.17632/s56jcjvrgt
title: The novel application of syringe needle in recessive dystrophic epidermolysis bullosa syndactyly release surgery.

description: Supplemental Figures. Before and after surgery.
DOI: 10.6084/m9.figshare.19952513.v1
title: MRL wound healing supplemental data

description: Supplemental data: 1. genes with evidence for allele-specific expression (ASE) in CASTxMRL F1s from cell populations harvested from wounds on the dorsal and ear 2. Enrichments of genes with differential ASE between ear and dorsal wounds 3. Raw allele-specific read counts 4. Genes with differential allele-specific expression within QTL support intervals for ear closure
DOI: 10.6084/m9.figshare.3516098.v1
title: Appendix C. Annual basal area increment of Scots pine per diameter class; x-axis numbers are the central value of the class, and classes are each 5 cm wide.

description: Annual basal area increment of Scots pine per diameter class; x-axis numbers are the central value of the class, and classes are each 5 cm wide.
DOI: 10.6084/m9.figshare.5435995.v1
title: Music.Baroque.MIDI

description: A collection of pieces of polyphonic music MIDI coded. This group is specifically for Baroque music. These files are intended to hear the actual sound of each piece of music. The text files behind these sonic files are analyzed and results are presented in DOI: 10.6084/m9.figshare.5435953 . You won't be able to directly ear music from these files. But you can download and open them with an audio-player software. To see the text representing the music you ear, open the file pretending it is a text-file.
DOI: 10.17632/5v9vfff94k
title: Supplementary data

description: Supplementary data to our study
DOI: 10.6084/m9.figshare.13530941.v1
title: A new job shop scheduling method for remanufacturing systems using extended artificial bee colony algorithm

description: This is the experimental data of the manuscript entitled "A new job shop scheduling method for remanufacturing systems using extended artificial bee colony algorithm". All data are generated through computer simulation and saved in the file with csv format. The data are the simulation of the real-world case. There are twelve instances for these experiments with various scales. The information of the datasets are shown in the csv document, including candidate execution mode of each job, jobs contained in each job family, processing time and replacement cost of replacement jobs, and processing time and repair cost of repair jobs.
DOI: 10.6084/m9.figshare.21923301.v2
title: Supplementary Material for: Intralesional corticosteroid administration in the treatment of keloids: a scoping review on injection methods

description: Background Intralesional corticosteroid administration (ICA) is a first-line treatment for keloids. However, its clinical results are still highly variable and often suboptimal. Treatment results may strongly be influenced by various operator dependent factors. The aim of this study is to map the details of ICA in keloids described in randomized controlled trials (RCTs), hence presenting the scientific practice of a first-line treatment for keloids in the best available evidence. Summary A systematic search was performed on PubMed, Ovid MEDLINE, Ovid EMBASE and CENTRAL. Eligible studies were RCTs including patients with keloids treated with intralesional corticosteroids. Treatment and study design related data were charted on a predefined form. Thirty-eight RCTs were included for data extraction. Triamcinolone acetonide was used in 37 (97.4%) studies. Dosing per cm2 could only be compared among ten (26%) studies, and varied from 1 to 20 mg. The maximum dose per session varied from 20 to 80 mg. Anesthetics were administered locally and orally in seven and one RCT(s). Treatment intervals varied from weekly to monthly, with four weeks most frequently (50%) used. Needle size was reported in eleven (29%) studies and varied from 26 to 30-gauge. Syringe size was specified in four (11%) studies, being 1 mL. The injection level was described in eleven (29%) studies. Blanching as endpoint was reported in ten (26%) studies. Outcome measures varied widely, from height, surface area or volume, to Vancouver Scar Scale, Patient and Observer Scar Assessment Scale, pain and itch scores, patient satisfaction and different efficacy rates. Only six studies had a follow-up of ≥6 months. Recurrence was identified in two studies with 18 weeks and 1 year of follow-up. Adverse events were reported in 25 (66%) studies. Key messages There is incomplete reporting and substantial heterogeneity in many aspects of ICA and study design among RCTs. This scoping review underscores the urgent need for standardization of treatment protocol and study design to enhance and uniform research conduct among keloid studies.
DOI: 10.6084/m9.figshare.22191457.v1
title: Data for Extreme Ultraviolet Metalens by Vacuum Guiding

description: <strong>Data for Extreme Ultraviolet Metalens by Vacuum Guiding</strong><br>
M. Ossiander1, *, †, M. L. Meretska1, †, H. K. Hampel2, †, S. W. D. Lim1, N. Knefz2, T. Jauk2, F. Capasso1, *, M. Schultze2, *
1 John A. Paulson School of Engineering and Applied Sciences, Harvard University; Cambridge, MA 02138, USA.<br>
2 Institute of Experimental Physics, Graz University of Technology; 8010 Graz, Austria.<br>
* Corresponding Authors: mossiander@g.harvard.edu, capasso@seas.harvard.edu, schultze@tugraz.at
Manuscript published in <strong>Science 380, 59–63 (2023)</strong>, https://science.org/doi/10.1126/science.adg6881
All data presented in the paper and supporting its claims is contained in this repository.<br>
Data is saved in JSON format with descriptive variable names containing units where applicable and ordered by the figure panel it is presented in.<br>
Additionally, raw SEM pictures and metasurface design files are included. To maintain a reasonable archive size usable on any computer, these are limited to 100 um optics diameter. The full 1000 um devices correspond exactly to these devices and use the same design mechanism for the outer optics parts.<br>
Data presented in Fig. 1B and Fig. S1 is distributed with the IMD software package (D. L. Windt, IMD—Software for modeling the optical properties of multilayer films. Comput. Phys. 12, 360–370 (1998).).
DOI: 10.6084/m9.figshare.28510271.v1
title: Seebeck coefficient of Au-Ni.xlsx

description: Digitized the figures from doi: 10.1126/sciadv.adj1611
DOI: 10.6084/m9.figshare.7472984.v1
title: Data Set 2: Uncropped Western Blots, Fig. 1b and Fig. 2b

description: This dataset contains 7 uncropped western blots in <b>.pdf </b>format for phosphatase and tensin homolog (PTEN) and isoform PTEN-L in mouse brain and in primary neuronal cell cultures. These correspond to figures 1b and 2b of the related article: Unique properties of PTEN-L contribute to neuroprotection in response to ischemic-like stress.<br>The related study investigates the function and regulation of PTEN-L in neurons in the context of brain ischemia. Exogenous, EGFP-tagged PTEN-L or the shorter variant PTEN were expressed in primary neurons after knock out of endogenous PTEN. Oxygen-glucose deprivation or exposure to 50 µM glutamate were applied to neurons to test their response to ischemic-like stress.<br><b>Methods</b><br><strong> </strong><strong>Figure 1 | PTEN-L protein isoforms vanish upon genomic PTEN ablation in neuronal cultures. </strong>(b) Primary neuronal cultures from conditional PTEN knockout mice were transduced with Cre delivering lentiviral particles. Immunoblotting against PTEN at different time points after Cre transduction showed changes in PTEN protein isoforms, as described in the related research article. Uncropped western blot images are displayed and described respectively.<br><strong> </strong><strong>Figure 2 | PTEN knockout and replacement model in primary neurons to compare PTEN variants under physiological conditions</strong>(b) PTEN isoforms were titrated to replace endogenous PTEN levels. Dose-dependent changes of the pAkt/AKT ratio both cells expressing PTEN:HA and PTEN-L:HA isoforms are reported in the related research article. Uncropped western blot images are displayed and described respectively. <br>
DOI: 10.6084/m9.figshare.12993488.v1
title: Supplementary Material for: Fifteen-Year Follow-Up of Stapedotomy Patients: Audiological Outcomes and Associated Factors in a Middle Income Country

description: <b><i>Objective:</i></b> To evaluate the short-term (postoperative), medium-term (5 years), and long-term (10 and 15 years) audiometric results of patients who underwent stapedotomy and to determine specific factors associated with better postoperative outcomes. <b><i>Methods:</i></b> This study is a retrospective case review of 486 ears with surgically confirmed stapes fixation who underwent microscopic small fenestra stapedotomy. Preoperative, postoperative, and medium- and long-term air conduction (AC), bone conduction (BC), and air-bone gap (ABG) were assessed. Postoperative factors associated with better postoperative outcomes were evaluated. <b><i>Results:</i></b> At 10- and 15-year follow-ups, ABG, AC, and BC were significantly deteriorated but clinically preserved in comparison with postoperative results. According to a multiple quantile regression, younger age was associated with better postoperative results at 0.25 kHz (<i>p</i> = 0.003) and 4 kHz (<i>p</i> = 0.028) and a smaller preoperative ABG was associated with better audiometric results at 0.25 kHz (<i>p</i> = 0.048), 0.5 kHz (<i>p</i> = 0.001), and 4 kHz (<i>p</i> = 0.001). In addition, younger age (<i>p</i> = 0.001 for AC and <i>p</i> &lt; 0.001 for BC) and preoperative AC PTA (<i>p</i> &lt; 0.001 for AC) were significantly associated with better postoperative AC and BC PTA. <b><i>Conclusions:</i></b> Stapedotomy surgery provides short-, medium-, and long-term hearing benefits in our studied cohort. ABG, AC, and BC thresholds obtained after the surgery are clinically preserved in 5-, 10-, and 15-year follow-ups, with an age-expected BC deterioration. Smaller preoperative ABG and younger age were positive predictors for better postoperative ABG. Future research should address long-term subjective and quality of life outcomes.
DOI: 10.6084/m9.figshare.25144979.v1
title: Supplementary Material for: Propylthiouracil-induced antineutrophil cytoplasmic antibody-associated vasculitis with overlap IgA nephropathy: a case report

description: Background 
The anti-thyroid medication propylthiouracil (PTU) is a recognised cause of drug-induced antineutrophil cytoplasmic antibody (ANCA)-associated vasculitis (AAV). Pauci-immune crescentic glomerulonephritis is the characteristic feature of this condition on renal biopsy. We present a case of PTU-induced AAV with the unusual histological finding of overlap IgA nephropathy (IgAN) in a young female with treatment-resistant Graves’ disease. 

Case report 
A 26-year-old female presented with an acute kidney injury, macroscopic haematuria and proteinuria 14 months after starting PTU for Graves’ disease. She had a history of established thyroid eye disease and a previous severe adverse reaction to Carbimazole. Her autoantibodies were strongly positive for myeloperoxidase (MPO)-ANCA (199 U/mL). Renal biopsy demonstrated both necrotising crescentic glomerulonephritis and prominent (3+) mesangial deposition of IgA. She was treated with glucocorticoids and Rituximab with sustained improvement in her renal function but persisting mild proteinuria and microscopic haematuria. PTU was ceased following a dose of radioactive iodine (RAI). 12 months post RAI, her Graves’ orbitopathy remained stable and her thyroid function was gradually normalising. 

Conclusion
This was a case of drug-induced AAV with histological features of overlap IgAN. We suggest that this patient had pre-existing subclinical IgAN and then developed AAV secondary to PTU. The management of her thyroid disease was complex given the PTU-induced vasculitis, previous reaction to Carbimazole, risks of a thyroidectomy on immunosuppression and possible worsening of her eye disease with RAI. The glucocorticoids and Rituximab prescribed for vasculitis may have prevented progression of her Graves’ orbitopathy after RAI.