cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8192162.v1
title: SWAP70 is a universal GEF-like adaptor for tethering actin to phagosomes

description: We recently identified a key role for SWAP70 as the tethering factor stabilizing F-actin filaments on the surface of phagosomes in human dendritic cells by interacting both with Rho-family GTPases and the lipid phosphatidylinositol (3,4)-bisphosphate. In this study, we aimed to investigate whether this role of SWAP70 was general among immune phagocytes. Our data reveal that SWAP70 is recruited to early phagosomes of macrophages and dendritic cells from both human and mouse. The putative inhibitor of SWAP70 sanguinarine blocked phagocytosis and F-actin polymerization, supporting a key role for SWAP70 in phagocytosis as demonstrated previously with knock-down. Moreover, SWAP70 was recently shown to sequester the F-actin severing protein cofilin and we investigated this relationship in phagocytosis. Our data show an increased activation of cellular cofilin upon siRNA knockdown of SWAP70. Finally, we explored whether SWAP70 would be recruited to the immune synapse between dendritic cells and T cells required for antigen presentation, as the formation of such synapses depends on F-actin. However, we observed that SWAP70 was depleted at immune synapses and specifically was recruited to phagosomes. Our data support an essential and specific role for SWAP70 in tethering and stabilizing F-actin to the phagosomal surface in a wide range of phagocytes.
DOI: 10.6084/m9.figshare.8192183
title: New spiders (Araneae: Palpimanoidea) from the Jurassic Yanliao Biota of China

description: Several new spider specimens, belonging to the superfamily Palpimanoidea, are described from the Middle–Upper Jurassic Haifanggou Formation (early assemblage of the Yanliao Biota) of Inner Mongolia, China. Two new genera and species, and a new species in the genus <i>Sinaranea</i> Selden, Huang & Ren, 2008, are described. <i>Caestaranea jurassica</i> gen. et sp. nov. is described on the basis of several adult males, typified by boxing-glove shaped pedipalps, as well as females and juveniles. <i>Onychopalpus thomisoides</i> gen. et sp. nov. is the largest palpimanoid known, and its habitus resembles that of a crab spider (Thomisidae) in having large, laterigrade anterior legs with rows of macrosetae on the femora and a squat, rotund opisthosoma. However, the distinctive adult male pedipalp bears a pectinate claw, so the holotype specimen is a subadult male; the other specimens referred to this species are smaller juveniles. Three new specimens of <i>Sinaranea metaxyostraca</i> Selden, Huang & Ren, 2008, including two adult males, are described here, and the new species <i>S. brevicrus</i> sp. nov., which has shorter legs than the type species, is described from an adult male and an adult female. These new palpimanoids substantially increase the diversity of the superfamily in the Middle Jurassic, and the unusual <i>Onychopalpus</i> provides evidence for a different mode of life for these spiders. http://www.zoobank.org/urn:lsid:zoobank.org:pub:D7726F4B-349E-4C2B-960D-371C27A6B77F
DOI: 10.25387/g3.7706717.v1
title: Supplemental Material for Mosca et al., 2019

description: The document
included all supplementary materials for the <i>Abies alba</i> genome assembly. The following data are listed in the
supplementary tables: the estimation of DNA concentration (Table S1), the Gene Ontology
(GO) term categories used to count the GO terms (Table S2), the genome
annotation statistics (Table S3), the intron and exon statistics (Table S4),
and the count and percentage of the GO terms (Table S5). The supplementary
figures are also inclueded: <i>Abies alba</i>
distribution map (Figure S1), the location of the sampled tree AA_WSL01 (Figure S2), plot
for the comparison between <i>Abies</i> cloroplast
(Figure S3), boxplots of the gene distribution lengths in <i>A. alba</i> (Figure S4) and in other conifers (Figure S5), distribution
of the most abundant GO terms.
DOI: 10.25387/g3.7706717.v2
title: Supplemental Material for Mosca et al., 2019

description: The document
included all supplementary materials for the <i>Abies alba</i> genome assembly. The following data are listed in the
supplementary tables: the estimation of DNA concentration (Table S1), the Gene Ontology
(GO) term categories used to count the GO terms (Table S2), the genome
annotation statistics (Table S3), the intron and exon statistics (Table S4),
and the count and percentage of the GO terms (Table S5). The supplementary
figures are also inclueded: <i>Abies alba</i>
distribution map (Figure S1), the location of the sampled tree AA_WSL01 (Figure S2), plot
for the comparison between <i>Abies</i> cloroplast
(Figure S3), boxplots of the gene distribution lengths in <i>A. alba</i> (Figure S4) and in other conifers (Figure S5), distribution
of the most abundant GO terms.
DOI: 10.6084/m9.figshare.8191247
title: IL-33 DATA

description: This Dataset is generated and analyzed during the current study. This data includes the results of the environmental factors obtained from the questionnaire and results of laboratory assays.<br>
DOI: 10.6084/m9.figshare.8191247.v1
title: IL-33 DATA

description: This Dataset is generated and analyzed during the current study. This data includes the results of the environmental factors obtained from the questionnaire and results of laboratory assays.<br>
DOI: 10.6084/m9.figshare.8192183.v1
title: New spiders (Araneae: Palpimanoidea) from the Jurassic Yanliao Biota of China

description: Several new spider specimens, belonging to the superfamily Palpimanoidea, are described from the Middle–Upper Jurassic Haifanggou Formation (early assemblage of the Yanliao Biota) of Inner Mongolia, China. Two new genera and species, and a new species in the genus <i>Sinaranea</i> Selden, Huang & Ren, 2008, are described. <i>Caestaranea jurassica</i> gen. et sp. nov. is described on the basis of several adult males, typified by boxing-glove shaped pedipalps, as well as females and juveniles. <i>Onychopalpus thomisoides</i> gen. et sp. nov. is the largest palpimanoid known, and its habitus resembles that of a crab spider (Thomisidae) in having large, laterigrade anterior legs with rows of macrosetae on the femora and a squat, rotund opisthosoma. However, the distinctive adult male pedipalp bears a pectinate claw, so the holotype specimen is a subadult male; the other specimens referred to this species are smaller juveniles. Three new specimens of <i>Sinaranea metaxyostraca</i> Selden, Huang & Ren, 2008, including two adult males, are described here, and the new species <i>S. brevicrus</i> sp. nov., which has shorter legs than the type species, is described from an adult male and an adult female. These new palpimanoids substantially increase the diversity of the superfamily in the Middle Jurassic, and the unusual <i>Onychopalpus</i> provides evidence for a different mode of life for these spiders. http://www.zoobank.org/urn:lsid:zoobank.org:pub:D7726F4B-349E-4C2B-960D-371C27A6B77F
DOI: 10.6084/m9.figshare.8192237
title: CHIKV ECSA lineage circulation in Rio de Janeiro

description: This repository contais the input data, epidemiological reports and BEATS XML  and Log files used for the time-scaled pylogenetic analysis performed for the publication of the study "Circulation of chikungunya
virus East/Central/South African lineage in Rio de Janeiro, Brazil" (Xavier et al., Plos One, 2019).<br>
DOI: 10.6084/m9.figshare.8192237.v1
title: CHIKV ECSA lineage circulation in Rio de Janeiro

description: This repository contais the input data, epidemiological reports and BEATS XML  and Log files used for the time-scaled pylogenetic analysis performed for the publication of the study "Circulation of chikungunya
virus East/Central/South African lineage in Rio de Janeiro, Brazil" (Xavier et al., Plos One, 2019).<br>
DOI: 10.6084/m9.figshare.8192291
title: Redescription of <i>Anaschisma</i> (Temnospondyli: Metoposauridae) from the Late Triassic of Wyoming and the phylogeny of the Metoposauridae

description: Metoposaurids are non-marine temnospondyls that are among the most common constituents of Late Triassic deposits, but despite their abundance, the evolutionary relationships of the group are poorly resolved and have not been fully addressed with modern phylogenetic methods. The genus <i>Anaschisma</i> is one of a number of poorly resolved metoposaurid taxa and was erected to describe two species from the Popo Agie Formation (Carnian) in Wyoming: <i>Anaschisma browni</i> and <i>Anaschisma brachygnatha</i>. Since being named, the genus has been repeatedly synonymized and separated with other taxa in the context of broader revisions of the Metoposauridae. At present, <i>Anaschisma</i> is considered to be an indeterminate metoposaurid. Extensive descriptive work of metoposaurids since the erection of <i>Anaschisma</i> in 1905 and the last taxonomic review of the clade in 1993, including the naming of several new taxa and the reappraisal of several others, has generated a sufficiently detailed database through which to re-evaluate the taxonomy of the Metoposauridae as part of the analysis of phylogenetic relationships of <i>Anaschisma</i>. Here we reappraise and redescribe the holotypes of <i>A. browni</i> and <i>A. brachygnatha</i> to determine their taxonomic status and relationships in the context of an updated and revised metoposaurid phylogenetic framework. <i>Anaschisma browni</i> and <i>Anaschisma brachygnatha</i> are synonymized under the former species, as all previously listed diagnostic differences are compatible with intraspecific variation. Additionally, the well-known <i>Koskinonodon perfectus</i> is found to be a junior synonym of <i>Anaschisma browni</i>, which takes taxonomic precedence given its earlier description. Poor phylogenetic resolution of the Metoposauridae is likely the product of marked morphological conservatism within the clade and limited character sampling, although some patterns of regional clustering are apparent from the analysis.
DOI: 10.6084/m9.figshare.8192291.v1
title: Redescription of <i>Anaschisma</i> (Temnospondyli: Metoposauridae) from the Late Triassic of Wyoming and the phylogeny of the Metoposauridae

description: Metoposaurids are non-marine temnospondyls that are among the most common constituents of Late Triassic deposits, but despite their abundance, the evolutionary relationships of the group are poorly resolved and have not been fully addressed with modern phylogenetic methods. The genus <i>Anaschisma</i> is one of a number of poorly resolved metoposaurid taxa and was erected to describe two species from the Popo Agie Formation (Carnian) in Wyoming: <i>Anaschisma browni</i> and <i>Anaschisma brachygnatha</i>. Since being named, the genus has been repeatedly synonymized and separated with other taxa in the context of broader revisions of the Metoposauridae. At present, <i>Anaschisma</i> is considered to be an indeterminate metoposaurid. Extensive descriptive work of metoposaurids since the erection of <i>Anaschisma</i> in 1905 and the last taxonomic review of the clade in 1993, including the naming of several new taxa and the reappraisal of several others, has generated a sufficiently detailed database through which to re-evaluate the taxonomy of the Metoposauridae as part of the analysis of phylogenetic relationships of <i>Anaschisma</i>. Here we reappraise and redescribe the holotypes of <i>A. browni</i> and <i>A. brachygnatha</i> to determine their taxonomic status and relationships in the context of an updated and revised metoposaurid phylogenetic framework. <i>Anaschisma browni</i> and <i>Anaschisma brachygnatha</i> are synonymized under the former species, as all previously listed diagnostic differences are compatible with intraspecific variation. Additionally, the well-known <i>Koskinonodon perfectus</i> is found to be a junior synonym of <i>Anaschisma browni</i>, which takes taxonomic precedence given its earlier description. Poor phylogenetic resolution of the Metoposauridae is likely the product of marked morphological conservatism within the clade and limited character sampling, although some patterns of regional clustering are apparent from the analysis.
DOI: 10.6084/m9.figshare.8192309
title: Tadpole_predictors_tables

description: local predictors of tadpole diversity
DOI: 10.6084/m9.figshare.8192309.v1
title: Tadpole_predictors_tables

description: local predictors of tadpole diversity
DOI: 10.6084/m9.figshare.8192342
title: Conservation payments and land conflict in Ecuador

description: Dataset accompanies manuscript and analysis titled "The impact of paying for forest conservation on perceived land conflicts in Ecuador".
DOI: 10.6084/m9.figshare.8192342.v1
title: Conservation payments and land conflict in Ecuador

description: Dataset accompanies manuscript and analysis titled "The impact of paying for forest conservation on perceived land conflicts in Ecuador".
DOI: 10.6084/m9.figshare.8192366
title: Data for "The Temple Scroll: Reconstructing an Ancient Manufacturing Practice"

description: Data not included in manuscript. EDS data used to create ternary diagrams.<br>Raman spectra and micro-XRF maps are all presented in manuscript.
DOI: 10.6084/m9.figshare.8192366.v1
title: Data for "The Temple Scroll: Reconstructing an Ancient Manufacturing Practice"

description: Data not included in manuscript. EDS data used to create ternary diagrams.<br>Raman spectra and micro-XRF maps are all presented in manuscript.
DOI: 10.6084/m9.figshare.8192378
title: Efficacy of istradefylline for gait disorders with freezing of gait in Parkinson’s disease: A single-arm, open-label, prospective, multicenter study

description: <b>Background</b>: Gait disorders are common in Parkinson’s disease patients who respond poorly to dopaminergic treatment. Blockade of adenosine A<sub>2A</sub> receptors is expected to improve gait disorders. Istradefylline is a first-in-class selective adenosine A<sub>2A</sub> receptor antagonist with benefits for motor complications associated with Parkinson’s disease. <b>Research design and methods</b>: This multicenter, open-label, single-group, prospective interventional study evaluated changes in total gait-related scores of the Part II/III Movement Disorder Society-Unified Parkinson’s Disease Rating Scale (MDS-UPDRS) and Freezing of Gait Questionnaire (FOG-Q) in 31 Parkinson’s disease patients treated with istradefylline. Gait analysis by portable gait rhythmogram was performed. <b>Results</b>: MDS-UPDRS Part III gait-related total scores significantly decreased at Weeks 4–12 from baseline with significant improvements in gait, freezing of gait, and postural stability. Significant decreases in MDS-UPDRS Part II total scores and individual item scores at Week 12 indicated improved daily living activities. At Week 12, there were significant improvements in FOG-Q, new FOG-Q, and overall movement per 48 h measured by portable gait rhythmogram. Adverse events occurred in 7/31 patients. <b>Conclusions</b>: Istradefylline improved gait disorders in Parkinson’s disease patients complicated with freezing of gait, improving their quality of life. No unexpected adverse drug reactions were identified. <b>Trial registration</b>: UMIN-CTR (UMIN000020288).
DOI: 10.6084/m9.figshare.8192378.v1
title: Efficacy of istradefylline for gait disorders with freezing of gait in Parkinson’s disease: A single-arm, open-label, prospective, multicenter study

description: <b>Background</b>: Gait disorders are common in Parkinson’s disease patients who respond poorly to dopaminergic treatment. Blockade of adenosine A<sub>2A</sub> receptors is expected to improve gait disorders. Istradefylline is a first-in-class selective adenosine A<sub>2A</sub> receptor antagonist with benefits for motor complications associated with Parkinson’s disease. <b>Research design and methods</b>: This multicenter, open-label, single-group, prospective interventional study evaluated changes in total gait-related scores of the Part II/III Movement Disorder Society-Unified Parkinson’s Disease Rating Scale (MDS-UPDRS) and Freezing of Gait Questionnaire (FOG-Q) in 31 Parkinson’s disease patients treated with istradefylline. Gait analysis by portable gait rhythmogram was performed. <b>Results</b>: MDS-UPDRS Part III gait-related total scores significantly decreased at Weeks 4–12 from baseline with significant improvements in gait, freezing of gait, and postural stability. Significant decreases in MDS-UPDRS Part II total scores and individual item scores at Week 12 indicated improved daily living activities. At Week 12, there were significant improvements in FOG-Q, new FOG-Q, and overall movement per 48 h measured by portable gait rhythmogram. Adverse events occurred in 7/31 patients. <b>Conclusions</b>: Istradefylline improved gait disorders in Parkinson’s disease patients complicated with freezing of gait, improving their quality of life. No unexpected adverse drug reactions were identified. <b>Trial registration</b>: UMIN-CTR (UMIN000020288).
DOI: 10.6084/m9.figshare.8194169
title: defunct

description: practice data
DOI: 10.6084/m9.figshare.8194169.v1
title: dibsi shell data

description: practice data
DOI: 10.6084/m9.figshare.8194175
title: Supplemental_DATA.tar.gz

description: This data is unpublished. please contact Frank Aylward before using for any other projects (faylward@vt.edu).<br><br>
DOI: 10.6084/m9.figshare.8194175.v1
title: Supplemental_DATA.tar.gz

description: <br>Notes on the data:<br>--------------------------<br><br># GEVE_contigs:<br>---------------<br>This folder contains fasta nucelotide files (contigs) for each of the giant endogenous virus elements (GEVE) curated from the respective green algal genomes.<br><br><br># GEVE_proteins:<br>----------------<br>This folder contains fasta protein files (translated from Prodigal predicted ORFs) for each of the GEVEs.<br><br># Core_genes_raw_file<br>---------------------<br>This folder contains curated core genes from the GEVEs and reference sequences (See supplementary methods for details), without alignment. Core genes curated from the GEVEs have names that refer to the contigs they originated from. Reference sequences have NCBI accession numbers as ID.<br><br># Core_genes_alignments<br>-------------------<br>This folder contains the aligned version of the files in "Core_genes_raw_file" folder that were used for building the phylogenetic trees.<br><br>#Core_gene_HMM<br>---------------<br>This folder contain HMM profiles of 9 NCLDV core genes (plus the Major Capsid Protein) created from reference sequences.
DOI: 10.6084/m9.figshare.8194331.v1
title: BodyCompData.xlsx

description: Body composition outcomes of 30 participants before and after 12-week intervention using Norland Dxa, iDXA, and BodPod
DOI: 10.26180/5cedbcb8624d1
title: Speechless

description: <br><sub>A noise opera for four soloists,3 0 piece bass orchestra and 30 voice choir.</sub><sub>Composed between 2014- 2019.</sub><sub><br></sub><sub><b><i>PROGRAM NOTE</i></b></sub>'<sub>Speechless' is a 70 minute opera that is a homage to persons rendered speechless through political means.<br>In contemporary Australian culture, a number of cultural groups find themselves in positions of impotency, where they are left without a voice - legally, politically or culturally. Additionally, the populous is suffering compassion fatigue and often feels powerless to address larger philosophical issues.<em> Speechless</em> draws score and thematic material from the 2014 Human Rights Commission report entitled <em>‘The Forgotten Children: National Inquiry into Children in Immigration Detention.</em>’ The work is an abstract examination of how wordless music - vocal and instrumental - can empower text that is hidden or suppressed.<br>Using graphic notation and experimental vocal approaches, the work explores vocal techniques that owe more to electronic music than classical voice, engaging a 30 piece choir and the Australian Bass Orchestra formed from low strings, bass guitars, bass brass, bass drums and electronics.<br>​<br><strong>Synopsis</strong><br>Proposed for in an open warehouse space, the work follows the structure of conventional opera with an overture, arias, recitatives and choral sections. Yet the score is created using graphic notation, deriving material from aspects of the report such as drawings, graphics, tables and design schema. The vocal material is presented as notated, ‘voiceless signing’ - a type of singing without understandable words pioneered by the likes of Ennio Morricone in the 1970s, informed by the experimental work of singers such as Cathy Berberian, Joan La Barbara and sound poet Amanda Stewart. The orchestra provides a visceral element to the sonic world, with performers illuminated simply but dramatically to keep the focus on the human aspects so central to the work.</sub><i><b><sub><br></sub></b></i><i><b><sub>PERFORMANCES</sub></b></i><sub>Perth Festival, 2019 season.</sub><sub><br></sub><br><strong><br></strong>
DOI: 10.26180/5cedc3203741b
title: Her Pockets Full of Inertia

description: There are two versions of this work:For flute chior and a.m. radios.<br>Flute solo with flute choir and a.m. radios(there is a version of the score with prerecroded parts embedded in it)<br>Commissioned by Lamorna Nightingale for the NOW Flute ensemble.<br><br>Premiered at the Australian Flute Festival, Canberra, 4 October 2015.<br>Monash Flute Ensemble, at Monash University in September, 2017.Version for solo bass flute and flute choir playback premiered at Tilde new music Festival, Melbourne, January 2019.<br><br>This piece is based on the poem by the same name, by Claire Gaskin. The work separates the flute choir into five groups, each with an a.m. radio. The work treats the poem as a whole, rather than a descriptor of each line, and creates and eerie atmosphere of stasis and cloud like sounds. <br>This piece uses the Decibel ScorePlayer to read the score, so you can change the speed and see your own part in the score. The benefits of this is you can seperate out the parts for easier reading. Or you can play with the video of the score, downloadable below. you can also play solo with the score, of which there is a version with the flute choir embedded in the score file. The instructions for performance are in the ScorePlayer file.<br>The piece was released on the 'Other Voices' CD performed by Lamorna Nightingale and Cat Hope.<br>
DOI: 10.26180/5cedc42de41be
title: The Moment of Disappearance

description: For Orchestra, guitars and objects.<br><br>This work was commissioned by Kate MacMillan for her installation of the same name. The piece was recorded by the London Improvisers Orchestra at the Riivoli Ballroom in September 2013 by Dave Hunt. <br><br>Premiered Carrigeworks, Sydney November, 2014.<br><br>The work is for an orchestra divided into 4 sections, with additional percussion and electric guitar.<br><br>You can find more about the project here. <br><br>To perform this work, you can download the video score below, or download the iPad app, the Decibel ScorePlayer which has many more features such as the ability to network multiple iPads (one for each member in the ensemble if desired), change the speed, see individual parts, move around for rehearsal etc. <br>
DOI: 10.26180/5cedc5bcbf0b4
title: Black Emperor

description: .for 2 concert organs and string orchestra.<br><br>Black Emperor was written for the International Space Time Concerto competition, where it was premiered on November 30 2012, and was awarded the Peoples Choice Award in the Networked performance category. The work is intended for remote internet hook up, where the organs are in different locations (or in the same town), as are the sections of the string orchestra. The lag (latency) experienced in this kind of networking is an intentional part of the score, it creates a fluttery, feathery effect as many instruments join together the make up the parts. The work uses a graphic notation that explores the qualities of drone and glissandi. <br><br>This piece requires the Decibel ScorePlayer to read it. The Score player can be hooked up over the internet so people in different locations can play the same score.