cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13200236.v1
title: Supplementary Material for: Retrospective Post-mortem SARS-CoV-2 RT-PCR of Autopsies with COVID-19-Suggestive Pathology Supports the Absence of Lethal Community Spread in Basel, Switzerland, before February 2020

description: <b><i>Introduction:</i></b> Coronavirus disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has rapidly spread around the world. While the first case was recorded in Hubei in December 2019, the extent of early community spread in Central Europe before this period is unknown. A high proportion of asymptomatic cases and undocumented infections, high transmissibility, and phylogenetic genomic diversity have engendered the controversial possibility of early international community spread of SARS-CoV-2 before its emergence in China. <b><i>Methods:</i></b> To assess the early presence of lethal COVID-19 in Switzerland, we retrospectively performed an analysis of deaths at University Hospital Basel between October 2019 and February 2020 (<i>n</i> = 310), comparing the incidence of clinical causes of death with March 2020 (<i>n</i> = 72), the month during which the first lethal COVID-19 cases in Basel were reported. Trends of COVID-19-suggestive sequelae, such as bronchopneumonia with organization, acute respiratory distress syndrome (ARDS), or pulmonary embolisms (PE) were evaluated. In cases where autopsy was performed (<i>n</i> = 71), analogous analyses were conducted on the cause of death and pulmonary histological findings. Eight cases with a COVID-19-suggestive clinical history and histopathology between October 2019 and February 2020, and 3 cases before October 2019, were selected for SARS-CoV-2 RT-PCR. <b><i>Results:</i></b> A statistically significant rise in pulmonary causes of death was observed in March 2020 (<i>p</i> = 0.03), consistent with the reported emergence of lethal COVID-19 in Switzerland. A rise in lethal bronchopneumonia was observed between December 2019 and January 2020, which was likely seasonal. The incidence of lethal ARDS and PE was uniformly low between October 2019 and February 2020. All autopsy cases analyzed by means of SARS-CoV-2 RT-PCR yielded negative results. <b><i>Conclusion:</i></b> Our data suggest the absence of early lethal community spread of COVID-19 in Basel before its initial reported emergence in Switzerland in March 2020.
DOI: 10.6084/m9.figshare.14923662.v1
title: Supplementary Material for: The heterogeneity of response of PC12 cell lines from different laboratories to NGF and PACAP questions the reproducibility of studies carried out with tumor cell lines

description: Medicine
DOI: 10.6084/m9.figshare.3560016.v1
title: Appendix C. Supplementary information on the importance of focal patch design.

description: Supplementary information on the importance of focal patch design.
DOI: 10.6084/m9.figshare.20425632.v1
title: Output raster datasets from an application of a fine resolution spatially explicit forest water yield model in Florida's panhandle

description: These raster datasets are the output results for a spatial water yield model applied to an 11 county area in the state of Florida panhandle. The water yield model is adapted from Acharya, et al. 2022 and the spatial modelling process is detailed in this datasets associated publication. All data are in the WGS 1984 UTM Zone 16N coordinate system and have 10m horizontal spatial resolution. <br> The output raster datasets contained here are water yield estimate informed with 2018 pine basal area, binary depth to water table, and average aridity index input rasters. These rasters have 10m spatial resolution, the raster extent covers 11 counties in the panhandle of Florida, the units are in centimeters of water yield per year. The water yield outputs consist of ten rasters representing the current water yield using the mean aridity raster, the water yield expected from the three pine tree thinning scenarios: 7m/hectare ba, 11 m/hectare, and 18 m/hectare, taken from the mean aridity index. Then rasters representing the water yield expected from the three thinning scenarios under maximum, and minimum aridity indexes. <br> These ten outputs are listed here: <br> "wy_current_mean" Based on 2018 BA conditions; Mean ARID <br> "wy_18_mean" BA reduced to 18m2ha-1; Mean ARID <br> "wy_11_mean" BA reduced to 11m2ha-1; Mean ARID <br> "wy_7_mean" BA reduced to 7m2ha-1; Mean ARID <br> "wy_ 18_max" BA reduced to 18m2ha-1; Maximum ARID <br> "wy_ 11_max" BA reduced to 11m2ha-1; Maximum ARID <br> "wy_7_max" BA reduced to 7m2ha-1; Maximum ARID <br> "wy_ 18_min" BA reduced to 18m2ha-1; Minimum ARID <br> "wy_ 11_min" BA reduced to 11m2ha-1; Minimum ARID <br> "wy_ 7_min" BA reduced to 7m2ha-1; Minimum ARID <br> Water yield was estimated for 2018 using the following datasets to inform the model in the Current Water Yield Calculation tool: Leaf area index modeled from a 2018 pine species basal area raster, Depth to water table data provided by Florida Geological Survey and reclassified as a binary raster, Average aridity index raster generated with precipitation data from PRISM Climate Group and MODIS PET data. For detailed information on how the above inputs were developed, please see the associated publication.
DOI: 10.17632/4xtk2h2tcc
title: Zebrafish in Acute Kidney Disease

description: Zebrafish (Danio rerio) serves as a powerful tool to understand Acute Kidney Disease (AKI). Zebrafish models have been used to mimic clinical manifestations of renal failure, but they lack in specific structures for understanding the overall development. In this review, we tried to understand the development of the renal system, the genes related to the progression of AKI and its recovery in zebrafish. HNF-1 also known as hepatocyte nuclear factor is a gene which can alter the renal disease by managing several genes responsible for the pathogenesis of the disease. ATF3 or Activating Transcription Factor is also considered a potential therapeutic target. Zebrafish have a pair of ambiguous genes namely, wt1a and wt1b, which take part in regeneration of nephrons. Various drugs such as nonsteroidal anti-inflammatory medicines, anti-hypertensive drugs such as angiotensin converting enzyme (ACE) inhibitors and aminoglycoside antibiotics have been discussed upon as models for AKI in zebrafish. Various biomarkers such as Neutrophil gelatinase-associated lipocalin (NGAL) and other related biomarkers of kidney damage have been briefly mentioned. Zebrafish is a potential experimental model which can be extensively used to study human inherited diseases due to its fecundity, rapid development, optical transparency, and accessibility to genetic manipulation tools.
DOI: 10.17632/vgsd5kd5sz
title: Data for: Consistency of Thermodynamic Properties from CHEMCAD Process Simulations

description: The data and sample calculations shown here accompany the paper Consistency of Thermodynamic Properties from CHEMCAD Process Simulations. These materials can be used to replicate the data in the paper. The data tables can also be used to confirm the reliability of CHEMCAD for process simulations. Abstract of Original Paper: Accurate calculations of properties such as enthalpy, entropy, and fugacity are crucial for chemical process design. These properties are calculated from equations of state in commonly used process design software such as CHEMCAD, and software-based calculations of properties have been routine for decades. It is important to be able to rely on the accuracy of these calculations. Furthermore, students of thermodynamics and process engineers must be able to easily reproduce the calculations from the process simulator. In this study, we attempted to validate the compressibility factors, enthalpy, entropy, and fugacity coefficients from CHEMCAD by comparing the results of the process simulator to results from a published solution algorithm. Our results show good consistency for most molecules. However, we observe large deviations for nitric oxide, water and hydro- gen, and somewhat smaller deviation for a few other molecules. This report presents a detailed comparison of the thermodynamic properties of 48 molecules at two different states to demonstrate that our calculation is correct and that the deviations for hydrogen and water are real. This dataset is a comparison of thermodynamic properties of methane, ethane, propane, n-butane, isobutane, n-pentane, n-hexane, n-heptane, n-octane, ethylene, propylene, 1-butene, 1-pentene, 1-hexene, 1-heptene, 1-octene, acetaldehyde, acetylene, benzene, 1,3-butadiene, cyclohexane, ethanol, ethylbenzene, ethylene oxide, formaldehyde, methanol, styrene, toluene, air, ammonia, bromine, carbon monoxide, carbon dioxide, carbon disulfide, chlorine, hydrogen, hydrogen sulfide, hydrogen chloride, hydrogen cyanide, nitrogen, nitrous oxide, nitric oxide, nitrogen dioxide, dinitrogen tetroxide, oxygen, sulfur dioxide, sulfur trioxide, and water calculated using the Lee-Kesler method to the same calculations in CHEMCAD.
DOI: 10.17632/yckpyg2zhp
title: Data for: Adsorption Behaviours of Shale Oil in Kerogen Slit by Molecular Simulation

description: To a better understanding of this work, the original data are attached.
DOI: 10.17632/jpyhnz4cjj
title: NEGATIVE EFFECTS OF SOCIAL MEDIA ON SOCIETY AND WAYS TO REDUCE THEM

description: The principles of social justice, adherence to legal norms, the socio-economic well-being of citizens, and democratic pluralism define social security. These elements form the foundation of a secure society.
DOI: 10.6084/m9.figshare.28812152.v1
title: <b>The rapid</b><b> </b><b>development process of western boundary undercurrent in the South China Sea</b><b> </b><b>development process of western boundary undercurrent in the South China Sea</b>

description: <b>Data and code for figures 1 ~ 5</b>
DOI: 10.17632/ytdrs8bwzn
title: Single-cell analysis of COVID-19, sepsis, and HIV infection reveals hyperinflammatory and immunosuppressive signatures in monocytes. Liu et al

description: supplemental spreadsheets of "Single-cell analysis of COVID-19, sepsis, and HIV infection reveals hyperinflammatory and immunosuppressive signatures in monocytes"
DOI: 10.60893/figshare.jcp.28728611.v1
title: Supporting information

description: The supporting information text includes the computational details for the MD simulation and neural network training and supplementary results (convergence plots, CV vs time plots, and comparison of the chignolin FES with the DE Shaw data).
DOI: 10.25446/oxford.23205173.v6
title: Digitised, searchable Holle List in Stokhof (1980)

description: The digitised Holle List in Stokhof (1980). Visit (<i>i</i>) the webpage for details and for the interactive version of the list (see Table 1 on that webpage), and (<i>ii</i>)<i> </i>the Release page on GitHub for the versioning notes and for downloading the raw data (under the folder "data" in that repository).This version (v1.4.1 on its GitHub repository) includes the Transcription system/symbols and the approximate phonetic symbol for each grapheme (see Table 4, "Transcription Symbols", in the interactive webpage).<i>NOTE: Somehow, fig</i><b><i>share</i></b><i> produces an error when automatically importing this repository's newly released version from its source GitHub repository. Follow </i><i>the release page</i><i> for updates!</i><b>References</b>Rajeg, Gede Primahadi Wijaya. 2023. Digitised, searchable Holle List in Stokhof (1980) (1.4.1). Dataset. University of Oxford. https://doi.org/10.25446/oxford.23205173Stokhof, W. A. L. (ed.). 1980. <i>Holle lists, vocabularies in languages of Indonesia, vol. 1: Introductory volume</i>. Vol. Materials in Languages of Indonesia. Canberra, A.C.T., Australia: Dept. of Linguistics, Research School of Pacific Studies, The Australian National University. https://core.ac.uk/reader/159464813.
DOI: 10.6084/m9.figshare.8282306.v1
title: Graph Data Version 3

description: Gates Open Research version 3 dataset for Figure 3
DOI: 10.17632/nw5m4hs3jr
title: COVID-19 Combined Data-set with Improved Measurement Errors

description: Public health-related decision-making on policies aimed at controlling the COVID-19 pandemic outbreak depends on complex epidemiological models that are compelled to be robust and use all relevant available data. This data article provides a new combined worldwide COVID-19 dataset obtained from official data sources with improved systematic measurement errors and a dedicated dashboard for online data visualization and summary. The dataset adds new measures and attributes to the normal attributes of official data sources, such as daily mortality, and fatality rates. We used comparative statistical analysis to evaluate the measurement errors of COVID-19 official data collections from the Chinese Center for Disease Control and Prevention (Chinese CDC), World Health Organization (WHO) and European Centre for Disease Prevention and Control (ECDC). The data is collected by using text mining techniques and reviewing pdf reports, metadata, and reference data. The combined dataset includes complete spatial data such as countries area, international number of countries, Alpha-2 code, Alpha-3 code, latitude, longitude, and some additional attributes such as population. The improved dataset benefits from major corrections on the referenced data sets and official reports such as adjustments in the reporting dates, which suffered from a one to two days lag, removing negative values, detecting unreasonable changes in historical data in new reports and corrections on systematic measurement errors, which have been increasing as the pandemic outbreak spreads and more countries contribute data for the official repositories. Additionally, the root mean square error of attributes in the paired comparison of datasets was used to identify the main data problems. The data for China is presented separately and in more detail, and it has been extracted from the attached reports available on the main page of the CCDC website. This dataset is a comprehensive and reliable source of worldwide COVID-19 data that can be used in epidemiological models assessing the magnitude and timeline for confirmed cases, long-term predictions of deaths or hospital utilization, the effects of quarantine, stay-at-home orders and other social distancing measures, the pandemic’s turning point or in economic and social impact analysis, helping to inform national and local authorities on how to implement an adaptive response approach to re-opening the economy, re-open schools, alleviate business and social distancing restrictions, design economic programs or allow sports events to resume.
DOI: 10.6084/m9.figshare.7923656.v1
title: gVCF_NA19091

description: 1000 Genomes gVCF mapped to hs37d5 for NA19091. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.3558021.v1
title: Supplement 1. R code used for conducting the simulations.

description: File List simulation.r (MD5: 5fc2c0d472f1f3c0971e18872f453b23) Description The file simulation.r is an R script which will replicate the simulations conducted in the study. It (1) produces simulated data sets, (2) fits models to estimate transition probabilities (and, when possible, resampling error rate) using classical likelihood estimator, the method described in Conway-Cranos and Doak (2011) and the multistate dynamic occupancy model, and (3) draws some figures of simulation results.
DOI: 10.6084/m9.figshare.1246743.v2
title: Indole-3-carbinol and its N-alkoxy derivatives preferentially target ER<b>α</b>-positive breast cancer cells

description: Indole-3-carbinol (I3C) is a natural anti-carcinogenic compound found at high concentrations in <i>Brassica</i> vegetables. I3C was recently reported to inhibit neutrophil elastase (NE) activity, while consequently limiting the proteolytic processing of full length cyclin E into pro-tumorigenic low molecular weight cyclin E (LMW-E). In this study, we hypothesized that inhibition of NE activity and resultant LMW-E generation is critical to the anti-tumor effects of I3C. LMW-E was predominately expressed by ERα-negative breast cancer cell lines. However, ERα-positive cell lines demonstrated the greatest sensitivity to the anti-tumor effects of I3C and its more potent N-alkoxy derivatives. We found that I3C was incapable of inhibiting NE activity or the generation of LMW-E. Therefore, this pathway did not contribute to the anti-tumor activity of I3C. Gene expression analyzes identified ligand-activated aryl hydrocarbon receptor (AhR), which mediated sensitivity to the anti-tumor effects of I3C in ERα-positive MCF-7 cells. In this model system, the reactive oxygen species (ROS)-induced upregulation of ATF-3 and pro-apoptotic BH3-only proteins (e.g. NOXA) contributed to the sensitivity of ERα-positive breast cancer cells to the anti-tumor effects of I3C. Overexpression of ERα in MDA-MB-231 cells, which normally lack ERα expression, increased sensitivity to the anti-tumor effects of I3C, demonstrating a direct role for ERα in mediating the sensitivity of breast cancer cell lines to I3C. Our results suggest that ERα signaling amplified the pro-apoptotic effect of I3C-induced AhR signaling in luminal breast cancer cell lines, which was mediated in part through oxidative stress induced upregulation of ATF-3 and downstream BH3-only proteins.
DOI: 10.6084/m9.figshare.12682073.v1
title: Supplementary Material for: Comparative Acoustic Analyses of L2 English: The Search for Systematic Variation

description: <b><i>Background/Aims:</i></b> Previous research has shown that exposure to multiple foreign accents facilitates adaptation to an untrained novel accent. One explanation is that L2 speech varies systematically such that there are commonalities in the productions of nonnative speakers, regardless of their language background. <b><i>Methods:</i></b> A systematic acoustic comparison was conducted between 3 native English speakers and 6 nonnative accents. Voice onset time, unstressed vowel duration, and formant values of stressed and unstressed vowels were analyzed, comparing each nonnative accent to the native English talkers. A subsequent perception experiment tests what effect training on regionally accented voices has on the participant’s comprehension of nonnative accented speech to investigate the importance of within-speaker variation on attunement and generalization. <b><i>Results:</i></b> Data for each measure show substantial variability across speakers, reflecting phonetic transfer from individual L1s, as well as substantial inconsistency and variability in pronunciation, rather than commonalities in their productions. Training on native English varieties did not improve participants’ accuracy in understanding nonnative speech. <b><i>Conclusion:</i></b> These findings are more consistent with a hypothesis of accent attune­ment wherein listeners track general patterns of nonnative speech rather than relying on overlapping acoustic signals between speakers.
DOI: 10.17632/4cww4wbjpn
title: Rapid and accurate quantification of viable Bifidobacterium cells in milk powder with a propidium monoazide - antibiotic fluorescence in situ hybridization - flow cytometry method

description: Supporting information
DOI: 10.17632/w2d5dmgdf7
title: Data for: A modified yield function for modeling of the evolving yielding behavior and micro-mechanism in biaxial deformation of sheet metals
DOI: 10.6084/m9.figshare.28218374.v1
title: <b>Data and R code </b><b>Continental-scale crop production as a function of the soil microbiome</b>

description: <b>Data and R code </b><b>Continental-scale crop production as a function of the soil microbiome</b>
DOI: 10.17605/osf.io/42q5r
title: Selection and Engagement in Priming of Popout with Diffusion Analyses

description: This project hosts the program presentation files, data files, and the syntax files for data aggregation (SPSS), the analyses files (JASP) and summarized data from participants (csv) for the study "Attentional Selection and Engagement on the Three-Item Popout Search Task"
DOI: 10.17632/fhpzy4wjyj
title: Group-theoretical analysis of lattice vibrations

description: Title of program: GROUP THEORY OF LATTICE DYNAMICS Catalogue Id: ACMI_v1_0 Nature of problem The program block-diagonalizes the dynamical matrix characterizing lattice vibrations of solids, constructs symmetry coordinates, and labels these coordinates with the irreducible representations of the symmetry group. ADAPTATION SUMMARY: Vol:Year:Page 4:1972:249 "0001 EXTERNAL MODES" "External modes of molecular crystals." T.G. Worlton ADAPTATION SUMMARY: Vol:Year:Page 6:1973:149 "0002 IMR CALCULATION" "Irreducible multiplier representations." T.G. Worlton CORRECTION SUMMARY: Vol:Year:Page 8:1974:141 "B00ACORRECTION TO 0002 04/08/74" "Irreducible multiplier representations. (C.P.C. 6(1973)149)." T.G. Worlton Note: adaptation instructions are contained in source code Note: correction instructions are contained in source code Versions of this program held in the CPC repository in Mendeley Data ACMI_v1_0; GROUP THEORY OF LATTICE DYNAMICS; 10.1016/0010-4655(72)90058-6 ACMI_v2_0; GROUP THEORY LATTICE DYNAMICS 2; 10.1016/0010-4655(74)90057-5 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/tx22dgf6r6
title: Revisão algas e obesidade

description: Artigos para análise
DOI: 10.6084/m9.figshare.28327367.v1
title: <b>A bacterial effector manipulates host lysosomal protease activity-dependent plasticity in cell death modalities to facilitate infection</b>

description: Crosstalk between cell death programs confers appropriate host anti-infection immune responses, but how pathogens co-opt host molecular switches of cell death pathways to reprogram cell death modalities for facilitating infection remains largely unexplored. Here, we identify mammalian cell entry 3C (Mce3C) as a pathogenic cell death regulator secreted by<i> Mycobacterium tuberculosis</i> (Mtb), which causes tuberculosis featured with lung inflammation and necrosis. Mce3C binds host cathepsin B (CTSB), a non-caspase protease acting as a lysosome-derived molecular determinant of cell death modalities, to inhibit its protease activity towards BH3-interacting domain death agonist (BID) and receptor-interacting protein kinase 1 (RIPK1), thereby preventing the production of pro-apoptotic truncated BID (tBID) while maintaining the abundance of pro-necroptotic RIPK1. Disrupting the Mce3C-CTSB interaction promotes host apoptosis while suppressing necroptosis with attenuated Mtb survival and mitigated lung immunopathology in mice. Thus, pathogens manipulate host lysosomal protease activity-dependent plasticity in cell death modalities to promote infection and pathogenicity.
DOI: 10.17632/k62mhjcpnm
title: Data for: Substitution across Intermediates and Cross-Country Variation in Sectoral Linkages

description: Data used in Input Substitutability and Cross-Country Variation in Sectoral Linkages
DOI: 10.21233/w9ga-tm90
title: Kajiyashiki ostracode surface sample dataset

description: Raw data for the Kajiyashiki ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17632/jw2fxprgd3
title: AA-QLI-BRA

description: Brazilian version of the Alopecia Areata Quality of Life Index.
DOI: 10.6084/m9.figshare.11996799.v1
title: Zooplankton_Abundance _ Brito_Lolaia_et_al.csv

description: Zooplankton Abundances, ind. per m3