cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18674370
title: Code and data for: Landscape of Damage: How rookeries and landscape composition shape crop depredation risk

description: Code and data for: Landscape of Damage: How rookeries and landscape composition shape crop depredation risk

Reproducibility data for the manuscript "Landscape of Damage: How rookeries and landscape composition shape crop depredation risk", contains data and R script used in the main analysis.

Study aim

This study aims to (i) test whether farmer-reported bird damage to spring crops (maize and sunflower) matches field-measured damage, (ii) quantify how rook colony locations differ from random sites in terms of urban, arable, and forest cover, and assess how colony placement relates to crop damage, and (iii) determine how local short-sward availability (sown grassland leys) and the broader urban-forest context predict bird damage across 0.5-3 km landscape buffers in an agro-urban Swiss landscape.

Data Description





damagedata.csv csv file containing the IDs of the 25 monitored fields, their locations (longitude, latitude), crop type (sunflower/maize), the proportion of damaged plants (field-measured), and farmers’ damage estimates.




colonies.zip shp files of rook colonies around the 25 monitored fields, including their locations (longitude, latitude).




parcelles.zip shp file of the monitored fields, including their IDs, crop type, area (ha), and locations (longitude, latitude).


clc_raster.tif GeoTIFF raster of CORINE Land Cover 2018.



damage_colonies.csv csv file containing field IDs, the proportion of damaged plants, the number of crow nests (including the number of occupied nests), and the number of rook colonies, with the size of each colony (number of nests) when multiple colonies are present, all computed within a 3 km buffer around each field.




all_fields_500.csv, all_fields_1.csv, all_fields_3.csv,  all_fields_5.csv csv files containing field IDs (25 monitored fields and 50 survey fields), crop type, location, sowing date, and proportion of damaged plants, as well as landscape metrics around each field: land-use classes at three aggregation levels, alternative resource areas (cultivated maize and sunflower, grasslands and pastures), the total length of Small Woody Features, and hedgerow area, computed within 500 m, 1 km, 3 km, and 5 km buffers, respectively.



Code





rookeries.R R script following the structure of the Results section: (i) Bird damage: farmer and field estimates, which compares farmer-reported and field-measured damage, (ii) Rook colonies’ habitat and link with damage, and (iii) Landscape of damage, which fits landscape-scale models of bird damage across 0.5-3 km buffers. Across these sections, the script calibrates the models reported in the manuscript, estimates effects, performs pairwise comparisons of estimated parameters, and generates the associated summaries and figures.
DOI: 10.5281/zenodo.18674371
title: Code and data for: Landscape of Damage: How rookeries and landscape composition shape crop depredation risk

description: Code and data for: Landscape of Damage: How rookeries and landscape composition shape crop depredation risk

Reproducibility data for the manuscript "Landscape of Damage: How rookeries and landscape composition shape crop depredation risk", contains data and R script used in the main analysis.

Study aim

This study aims to (i) test whether farmer-reported bird damage to spring crops (maize and sunflower) matches field-measured damage, (ii) quantify how rook colony locations differ from random sites in terms of urban, arable, and forest cover, and assess how colony placement relates to crop damage, and (iii) determine how local short-sward availability (sown grassland leys) and the broader urban-forest context predict bird damage across 0.5-3 km landscape buffers in an agro-urban Swiss landscape.

Data Description





damagedata.csv csv file containing the IDs of the 25 monitored fields, their locations (longitude, latitude), crop type (sunflower/maize), the proportion of damaged plants (field-measured), and farmers’ damage estimates.




colonies.zip shp files of rook colonies around the 25 monitored fields, including their locations (longitude, latitude).




parcelles.zip shp file of the monitored fields, including their IDs, crop type, area (ha), and locations (longitude, latitude).


clc_raster.tif GeoTIFF raster of CORINE Land Cover 2018.



damage_colonies.csv csv file containing field IDs, the proportion of damaged plants, the number of crow nests (including the number of occupied nests), and the number of rook colonies, with the size of each colony (number of nests) when multiple colonies are present, all computed within a 3 km buffer around each field.




all_fields_500.csv, all_fields_1.csv, all_fields_3.csv,  all_fields_5.csv csv files containing field IDs (25 monitored fields and 50 survey fields), crop type, location, sowing date, and proportion of damaged plants, as well as landscape metrics around each field: land-use classes at three aggregation levels, alternative resource areas (cultivated maize and sunflower, grasslands and pastures), the total length of Small Woody Features, and hedgerow area, computed within 500 m, 1 km, 3 km, and 5 km buffers, respectively.



Code





rookeries.R R script following the structure of the Results section: (i) Bird damage: farmer and field estimates, which compares farmer-reported and field-measured damage, (ii) Rook colonies’ habitat and link with damage, and (iii) Landscape of damage, which fits landscape-scale models of bird damage across 0.5-3 km buffers. Across these sections, the script calibrates the models reported in the manuscript, estimates effects, performs pairwise comparisons of estimated parameters, and generates the associated summaries and figures.
DOI: 10.15468/dl.epj8bz
title: Occurrence Download

description: A dataset containing 8527 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Global Register of Introduced and Invasive Species - United States (Contiguous) (ver.2.0, 2022)"
 ]
}

 The dataset includes 8527 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027580-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ce25gd
title: Occurrence Download

description: A dataset containing 1209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trichopodus trichopterus",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 1209 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027581-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18602522
title: 30ka CESM Data - Spinup CAM files
DOI: 10.5281/zenodo.18602521
title: 30ka CESM Data - Spinup CAM files
DOI: 10.15468/dl.xutygv
title: Occurrence Download

description: A dataset containing 107773 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Malus sylvestris"
 ]
}

 The dataset includes 107773 records from 1154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027537-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5buw9a
title: Occurrence Download

description: A dataset containing 459 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (USA.1_1, USA.43_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Cambarus girardianus, Cambarus andersoni, Cambarus diupalma, Cambarus lentiginosus, Cambarus coosawattae, Cambarus fasciatus, Cambarus manningi, Cambarus speciosus, Cambarus longirostris, Cambarus longulus, Cambarus chasmodactylus, Cambarus elkensis)"
 ]
}

 The dataset includes 459 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027582-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18648940
title: Codelists for "Systemic Therapies for Psoriatic Disease and Major Adverse Cardiovascular Events in Older Adults: A Population-based Cohort Study"

description: This repository provides diagnosis, procedure, and medication codelists (including Drug Identification Numbers, DINs) used in the study "Systemic therapies for psoriatic disease and major adverse cardiovascular events in older adults: a population-based cohort study."

The codelists support transparent and reproducible definitions of:



Study population with psoriatic disease (psoriasis and psoriatic arthritis)

Exposure to systemic psoriatic therapies (DIN-based drug classes)

Major adverse cardiovascular events (MACE) outcome and its individual components

Exclusion criteria

Covariables including comorbidities and medication-based covariables


We developed those codelists for use with Ontario administrative health data holdings at ICES, including databases maintained by the Canadian Institute for Health Information (CIHI), the Ontario Drug Benefit Database (ODB), the Ontario Health Insurance Plan Claims Database (OHIP), and the Canadian Organ Replacement Register (CORR).

This repository contains codelists and DIN lists only. It does not include individual-level data or analytic code. Data sharing agreements prohibit public release of the underlying administrative data. Access to ICES-held data may be requested through ICES Data & Analytic Services (https://www.ices.on.ca/DAS). 

More detailed file descriptions are available in README.md in the repository root (codelists/). We provide variable algorithms (including lookback windows and operational definitions) in the supplement of the corresponding article.

Please cite the corresponding article and this Zenodo record.
DOI: 10.5281/zenodo.18563882
title: Codelists for "Systemic Therapies for Psoriatic Disease and Major Adverse Cardiovascular Events in Older Adults: A Population-based Cohort Study"

description: This repository provides diagnosis, procedure, and medication codelists (including Drug Identification Numbers, DINs) used in the study "Systemic therapies for psoriatic disease and major adverse cardiovascular events in older adults: a population-based cohort study."

The codelists support transparent and reproducible definitions of:



Study population with psoriatic disease (psoriasis and psoriatic arthritis)

Exposure to systemic psoriatic therapies (DIN-based drug classes)

Major adverse cardiovascular events (MACE) outcome and its individual components

Exclusion criteria

Covariables including comorbidities and medication-based covariables


We developed those codelists for use with Ontario administrative health data holdings at ICES, including databases maintained by the Canadian Institute for Health Information (CIHI), the Ontario Drug Benefit Database (ODB), the Ontario Health Insurance Plan Claims Database (OHIP), and the Canadian Organ Replacement Register (CORR).

This repository contains codelists and DIN lists only. It does not include individual-level data or analytic code. Data sharing agreements prohibit public release of the underlying administrative data. Access to ICES-held data may be requested through ICES Data & Analytic Services (https://www.ices.on.ca/DAS). 

More detailed file descriptions are available in README.md in the repository root (codelists/). We provide variable algorithms (including lookback windows and operational definitions) in the supplement of the corresponding article.

Please cite the corresponding article and this Zenodo record.
DOI: 10.3886/e246025
title: Ignatius Ajuru University of Education {IAUE} 2026/27 Direct Entry Form/JUPEB Form Is Out Now Call (07073028206)

description: Ignatius Ajuru University of Education {IAUE} 2026/27 Direct Entry Form/JUPEB Form Is Out Now Call (07073028206), TO APPLY CALL THE OFFICE OF THE REGISTRAR (07073028206) FOR FURTHER INFORMATION ON HOW TO MAKE YOUR PROPER REGISTRATION BEFORE THE CLOSING DATE.
DOI: 10.5281/zenodo.18683238
title: Level-resolved photo-ionisation cross sections for modelling astrophysical plasma

description: Photo-ionised plasma is commonly found in a variety of settings in astrophysics, across a range of temperature and density scales. The photo-ionisation cross sections most often used to model emission and absorption in these settings are total cross sections calculated by the Opacity Project. While these high quality data are a standard in atomic physics, use of total cross sections in modelling plasma may incorrectly model level populations and ion fractions under certain conditions. Using cross sections resolved by both initial and final level are the best way to avoid such problems. New photo-ionisation calculations for S$^{+1-3}$ have been carried out using the atomic package Autostructure. Level-resolved cross sections from these and other calculations have been made available in one format for all the low charge states of C, N, O, Ne, Si and S. The IDL ionisation equilibrium routines from the latest version of CHIANTI have been modified so that this process can be included in ion fraction calculations.

The sources of the photo-ionisation (PI) cross sections and the file formats are described in the original MNRAS article and given at the end of each data file. The modified CHIANTI routines are also available here and at CHIANTI-VIP hosted on Github. They allow the users to include PI into the CHIANTI advanced model routines. These will, amongst other things, allow the user to reproduce the models from Dufresne, Del Zanna and Badnell (2021) and Dufresne, Del Zanna and Storey (2021).
DOI: 10.5281/zenodo.18602524
title: 30ka CESM Data - EU CAM files
DOI: 10.5281/zenodo.18602523
title: 30ka CESM Data - EU CAM files
DOI: 10.5281/zenodo.18683237
title: Level-resolved photo-ionisation cross sections for modelling astrophysical plasma

description: Photo-ionised plasma is commonly found in a variety of settings in astrophysics, across a range of temperature and density scales. The photo-ionisation cross sections most often used to model emission and absorption in these settings are total cross sections calculated by the Opacity Project. While these high quality data are a standard in atomic physics, use of total cross sections in modelling plasma may incorrectly model level populations and ion fractions under certain conditions. Using cross sections resolved by both initial and final level are the best way to avoid such problems. New photo-ionisation calculations for S$^{+1-3}$ have been carried out using the atomic package Autostructure. Level-resolved cross sections from these and other calculations have been made available in one format for all the low charge states of C, N, O, Ne, Si and S. The IDL ionisation equilibrium routines from the latest version of CHIANTI have been modified so that this process can be included in ion fraction calculations.

The sources of the photo-ionisation (PI) cross sections and the file formats are described in the original MNRAS article and given at the end of each data file. The modified CHIANTI routines are also available here and at CHIANTI-VIP hosted on Github. They allow the users to include PI into the CHIANTI advanced model routines. These will, amongst other things, allow the user to reproduce the models from Dufresne, Del Zanna and Badnell (2021) and Dufresne, Del Zanna and Storey (2021).
DOI: 10.15468/dl.w9jvqn
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 "TaxonKey is Sporobolus interruptus"
 ]
}

 The dataset includes 70 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027583-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/5rr-zdm-q4g
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z7k-b2k-0za
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fg9-z7b-2p0
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pd3-93b-vbj
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bcb-427-xsv
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xfv-29w-nb0
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dka-naa-qgj
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mv8-hvg-j8d
title: Lenticulina rotulata (Lamarck, 1804)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/37m-2wc-tey
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xts-dfm-vgm
title: Nummulitidae Blainville, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8p5-b9x-dt2
title: Calcarina hispida Brady, 1876

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kt4-fne-90g
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/78j-3xa-d8p
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x1c-y51-xz8
title: Valvulineria Cushman, 1926

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2cj-yxt-mvn
title: Nummulitidae Blainville, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vj2-tjw-wzb
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yp8-818-vvr
title: Nummulitidae Blainville, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/63v-yh6-d9f
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jzn-zj9-eb4
title: Planulina ariminensis d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jxn-pvp-2qm
title: Nummulitidae Blainville, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ngs-nbf-5s9
title: †Rectocyclammina chouberti Hottinger, 1967

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f0z-dcc-gle
title: Nummulitidae Blainville, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9m1-k50-wkz
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/brk-gwk-aj7
title: Amphistegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cta-92r-8kz
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j47-lnx-5ve
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2ea-s7t-m0j
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v6w-wyp-dd1
title: †Plectofrondicularia Liebus, 1902

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/00r-60a-jrj
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zd4-msd-vq4
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7lw-za2-xhk
title: Globigerina

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1bj-pgb-xxw
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s9a-v1j-0cv
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8g2-6jb-80s
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qj3-5cg-egx
title: †Vincularia cristata Lagaaij, 1969

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.46kb9v
title: Occurrence Download

description: A dataset containing 1651 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.5_1",
 "TaxonKey is Castor canadensis",
 "Year 2011-2025"
 ]
}

 The dataset includes 1651 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021725-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/47c-dyt-gkx
title: Sus scrofa Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f3b-71w-19f
title: Guttulina irregularis (d'Orbigny, 1846)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f8y-gjh-hzb
title: †Tremastegina lopeztrigoi (Palmer, 1934)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s71-cdl-lkw
title: Discorbis Lamarck, 1804

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.eu83zh
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Salamandrella keyserlingii"
 ]
}

 The dataset includes 73 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021726-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/dxr-3yw-v47
title: Bulimina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pd5-pa2-aay
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vp2-rq9-2qg
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.