cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.2566027
title: Collection of Schistosoma mansoni ChIP-Seq input fastq files

description: These are fastq files of ChIP-Seq input files for different life cycle stages of <em>Schistosoma mansoni</em>. adult female worms pairs of adults female cercariae miracidia primary sporocysts (sp1) Produced at IHPE (http://ihpe.univ-perp.fr/)
description: {"references": ["Roquis, D., Taudt, A., Geyer, K.K., Padalino, G., Hoffmann, K.F., Holroyd, N., Berriman, M., Aliaga, B., Chaparro, C., Grunau, C. and Augusto, R.C.: Histone methylation changes are required for life cycle progression in the human parasite Schistosoma mansoni. PLoS Pathog 14 (2018) e1007066.", "Roquis, D., Rognon, A., Chapparo, C., Boissier, J., Arancibia, N., Cosseau, C., Parrinello, H. and Grunau, C.: Frequency and mitotic heritability of epimutations in Schistosoma mansoni. Mol Ecol 25 (2016) 1741-1758.", "Roquis, D., Lepesant, J.M., Picard, M.A., Freitag, M., Parrinello, H., Groth, M., Emans, R., Cosseau, C. and Grunau, C.: The Epigenome of Schistosoma mansoni Provides Insight about How Cercariae Poise Transcription until Infection. PLoS Negl Trop Dis 9 (2015) e0003853.", "Roquis, D., Lepesant, J.M., Villafan, E., Boissier, J., Vieira, C., Cosseau, C. and Grunau, C.: Exposure to hycanthone alters chromatin structure around specific gene functions and specific repeats in Schistosoma mansoni. Front Genet 5 (2014) 207-218.", "Cosseau, C., Azzi, A., Smith, K., Freitag, M., Mitta, G. and Grunau, C.: Native chromatin immunoprecipitation (N-ChIP) and ChIP-Seq of Schistosoma mansoni: Critical experimental parameters. Molecular & Biochemical Parasitology 166 (2009) 70-76.", "Lepesant, M.J., J, Grunau, C. and Cosseau, C.: Towards an understanding of the epigenetics of schistosomes: a comparative epigenomic study. Mem Inst Oswaldo Cruz 106 (2011) 823-830."]}
DOI: 10.5281/zenodo.2559561
title: Collection of Schistosoma mansoni ChIP-Seq input fastq files

description: These are fastq files of ChIP-Seq input files for different life cycle stages of <em>Schistosoma mansoni</em>. adult female worms pairs of adults female cercariae miracidia primary sporocysts (sp1) Produced at IHPE (http://ihpe.univ-perp.fr/)
description: {"references": ["Roquis, D., Taudt, A., Geyer, K.K., Padalino, G., Hoffmann, K.F., Holroyd, N., Berriman, M., Aliaga, B., Chaparro, C., Grunau, C. and Augusto, R.C.: Histone methylation changes are required for life cycle progression in the human parasite Schistosoma mansoni. PLoS Pathog 14 (2018) e1007066.", "Roquis, D., Rognon, A., Chapparo, C., Boissier, J., Arancibia, N., Cosseau, C., Parrinello, H. and Grunau, C.: Frequency and mitotic heritability of epimutations in Schistosoma mansoni. Mol Ecol 25 (2016) 1741-1758.", "Roquis, D., Lepesant, J.M., Picard, M.A., Freitag, M., Parrinello, H., Groth, M., Emans, R., Cosseau, C. and Grunau, C.: The Epigenome of Schistosoma mansoni Provides Insight about How Cercariae Poise Transcription until Infection. PLoS Negl Trop Dis 9 (2015) e0003853.", "Roquis, D., Lepesant, J.M., Villafan, E., Boissier, J., Vieira, C., Cosseau, C. and Grunau, C.: Exposure to hycanthone alters chromatin structure around specific gene functions and specific repeats in Schistosoma mansoni. Front Genet 5 (2014) 207-218.", "Cosseau, C., Azzi, A., Smith, K., Freitag, M., Mitta, G. and Grunau, C.: Native chromatin immunoprecipitation (N-ChIP) and ChIP-Seq of Schistosoma mansoni: Critical experimental parameters. Molecular & Biochemical Parasitology 166 (2009) 70-76.", "Lepesant, M.J., J, Grunau, C. and Cosseau, C.: Towards an understanding of the epigenetics of schistosomes: a comparative epigenomic study. Mem Inst Oswaldo Cruz 106 (2011) 823-830."]}
DOI: 10.5523/bris.2rqavf34p74yi2kj7d267pe02v
title: Characterisation of small embedded two-dimensional defects using multi-view Total Focusing Method imaging algorithm

description: Supplementary material to support paper entitled "Characterisation of small embedded two-dimensional defects using multi-view Total Focusing Method imaging algorithm" in press in NDT&E International.
DOI: 10.25405/data.ncl.13643003.v1
title: Human Gene Ages Randomised

description: Randomised Human Gene Ages
DOI: 10.25405/data.ncl.13643003
title: Human Gene Ages Randomised

description: Randomised Human Gene Ages
DOI: 10.25405/data.ncl.13642991
title: Human ESC TADs Randomised

description: 30 different randomisations of the hESC TADs
DOI: 10.25405/data.ncl.13642991.v1
title: Human ESC TADs Randomised

description: 30 different randomisations of the hESC TADs
DOI: 10.6084/m9.figshare.11407350
title: Synthesis and antitumor activity evaluation of some thienopyrimidine derivatives

description: Some novel thienopyrimidine derivatives were synthesized via the reaction of 5- methyl-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carbohydrazide with different carbonyl compounds such as anhydrides, acid chlorides, carbon disulfide, phenyl isothiocyanate, triethyl orthoformate, diethyl acetylene dicarboxylate, acetylacetone, pyrazole-4-carboxaldehyde, and isatin. Also, the reaction of this carbohydrazide derivative with sodium nitrite in the presence of hydrochloric acid to give the corresponding azide derivative was discussed. The latter azide derivative was reacted with different amines to give the corresponding diheteryl urea derivatives. The antitumor activity evaluation of some representative examples of the synthesized compounds was examined against HePG2 and MCF-7 cell lines. Some of the newly synthesized compounds showed significant activity.
DOI: 10.6084/m9.figshare.11407350.v1
title: Synthesis and antitumor activity evaluation of some thienopyrimidine derivatives

description: Some novel thienopyrimidine derivatives were synthesized via the reaction of 5- methyl-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carbohydrazide with different carbonyl compounds such as anhydrides, acid chlorides, carbon disulfide, phenyl isothiocyanate, triethyl orthoformate, diethyl acetylene dicarboxylate, acetylacetone, pyrazole-4-carboxaldehyde, and isatin. Also, the reaction of this carbohydrazide derivative with sodium nitrite in the presence of hydrochloric acid to give the corresponding azide derivative was discussed. The latter azide derivative was reacted with different amines to give the corresponding diheteryl urea derivatives. The antitumor activity evaluation of some representative examples of the synthesized compounds was examined against HePG2 and MCF-7 cell lines. Some of the newly synthesized compounds showed significant activity.
DOI: 10.5281/zenodo.3828600
title: Supporting data for "A simple ATAC-seq protocol for population epigenetics"

description: This is supporting data for an article in which we describe a protocol for the generation of sequence-ready libraries for population epigenomics studies. The protocol is a streamlined version of the Assay for transposase accessible chromatin with high-throughput sequencing (ATAC-seq) that provides a positive display of accessible, presumably euchromatic regions. The protocol is straightforward and can be used with small individuals such as daphnia and schistosome worms, and probably many other biological samples of comparable size, and it requires little molecular biology handling expertise. In "Agarose picture.Tif" the left lane shows the 100 bp size marker, first 10 bands from down to top: 100bp, 200bp, 300bp, 400bp, 500bp, 600bp, 700bp, 800bp, 900bp and 1kbp. Produced at IHPE (http://ihpe.univ-perp.fr/)
description: This work was performed with the support of LabEx CeMEB, an ANR « Investissements d'avenir » program (ANR-10-LABX-04-01) and the RTP Epigenetics in Ecology and Evolution (RTP3E). R.A. and C.G. were supported by the Wellcome Trust Strategic award 107475/Z/15/Z. C.G. and A.M. received support from JSPS grant S17087.
DOI: 10.5281/zenodo.3828599
title: Supporting data for "A simple ATAC-seq protocol for population epigenetics"

description: This is supporting data for an article in which we describe a protocol for the generation of sequence-ready libraries for population epigenomics studies. The protocol is a streamlined version of the Assay for transposase accessible chromatin with high-throughput sequencing (ATAC-seq) that provides a positive display of accessible, presumably euchromatic regions. The protocol is straightforward and can be used with small individuals such as daphnia and schistosome worms, and probably many other biological samples of comparable size, and it requires little molecular biology handling expertise. In "Agarose picture.Tif" the left lane shows the 100 bp size marker, first 10 bands from down to top: 100bp, 200bp, 300bp, 400bp, 500bp, 600bp, 700bp, 800bp, 900bp and 1kbp. Produced at IHPE (http://ihpe.univ-perp.fr/)
description: This work was performed with the support of LabEx CeMEB, an ANR « Investissements d'avenir » program (ANR-10-LABX-04-01) and the RTP Epigenetics in Ecology and Evolution (RTP3E). R.A. and C.G. were supported by the Wellcome Trust Strategic award 107475/Z/15/Z. C.G. and A.M. received support from JSPS grant S17087.
DOI: 10.25405/data.ncl.13348055
title: Mouse ESC TADs Randomised

description: 30 different randomisations of the mESC TADs
DOI: 10.25405/data.ncl.13348055.v2
title: Mouse ESC TADs Randomised

description: 30 different randomisations of the mESC TADs
DOI: 10.25405/data.ncl.13348055.v1
title: Mouse ESC TADs Randomised (mm9)

description: 30 different randomisations of the mESC TADs
DOI: 10.25405/data.ncl.13348037
title: Mouse Gene Ages Randomised

description: 30 sets of randomised gene ages for mice
DOI: 10.25405/data.ncl.13348037.v2
title: Mouse Gene Ages Randomised

description: 30 sets of randomised gene ages for mice
DOI: 10.25405/data.ncl.13348037.v1
title: Mouse Gene Ages Randomised

description: 30 sets of randomised gene ages for mice
DOI: 10.15161/oar.it/73435
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.5281/zenodo.4476392
title: GHS (GitHub Search): Sampling Projects in GitHub for MSR Studies

description: To support researchers in sampling projects from GitHub, we present <strong>GHS (GitHub Search)</strong>, a dataset containing 25 characteristics (e.g., number of commits, license) of 507,871 repositories written in 9 programming languages -- http://seart-ghs.si.usi.ch/
DOI: 10.5281/zenodo.4478360
title: PENELLOPE - UVES spectra of targets in the Orion OB1 and sigma-Orionis regions

description: Spectra of the targets in the Orion OB1 and sigma Orionis regions observed with the VLT/UVES spectrograph in November-December 2020. These spectra are part of the PENELLOPE Large Program and are obtained close in time to the HST/ULLYSES spectra of the same targets. Here one can find the 1D flux-calibrated and telluric corrected spectra. Each object is observed simultaneously in three arms, blue, redu, redl, and the spectrum of each arm is saved in one file. The units of the spectra are: Flux [10**-16 erg/s/cm2/AA]; Wavelength [AA]. Each object is observed 3 times, the spectra are thus labelled as ep1, ep2, ep3. Data are public, we ask to ask to the authors of this release, who contributed to the observation preparation and data reduction, whether they want to be included in any publication using these data. The data are presented in Manara et al. (2021), currently in prep. For questions or comments please contact Carlo Manara, cmanara@eso.org
DOI: 10.5281/zenodo.4478376
title: PENELLOPE - ESPRESSO spectra of targets in the Orion OB1 and sigma-Orionis regions

description: Spectra of the targets in the Orion OB1 and sigma Orionis regions observed with the VLT/ESPRESSO spectrograph in November-December 2020. These spectra are part of the PENELLOPE Large Program and are obtained close in time to the HST/ULLYSES spectra of the same targets. Here one can find the 1D flux-calibrated and telluric corrected spectra. Each object is observed simultaneously in three arms, blue, redu, redl, and the spectrum of each arm is saved in one file. The units of the spectra are: Flux [erg/s/cm2/AA]; Wavelength [AA]. Each object is observed 3 times, the spectra are thus labelled as ep1, ep2, ep3. Only CVSO90 was observed just one time. Data are public, we ask to ask to the authors of this release, who contributed to the observation preparation and data reduction, whether they want to be included in any publication using these data. The data are presented in Manara et al. (2021), currently in prep. For questions or comments please contact Carlo Manara, cmanara@eso.org
DOI: 10.5281/zenodo.4478359
title: PENELLOPE - UVES spectra of targets in the Orion OB1 and sigma-Orionis regions

description: Spectra of the targets in the Orion OB1 and sigma Orionis regions observed with the VLT/UVES spectrograph in November-December 2020. These spectra are part of the PENELLOPE Large Program and are obtained close in time to the HST/ULLYSES spectra of the same targets. Here one can find the 1D flux-calibrated and telluric corrected spectra. Each object is observed simultaneously in three arms, blue, redu, redl, and the spectrum of each arm is saved in one file. The units of the spectra are: Flux [10**-16 erg/s/cm2/AA]; Wavelength [AA]. Each object is observed 3 times, the spectra are thus labelled as ep1, ep2, ep3. Data are public, we ask to ask to the authors of this release, who contributed to the observation preparation and data reduction, whether they want to be included in any publication using these data. The data are presented in Manara et al. (2021), currently in prep. For questions or comments please contact Carlo Manara, cmanara@eso.org
DOI: 10.5281/zenodo.4478375
title: PENELLOPE - ESPRESSO spectra of targets in the Orion OB1 and sigma-Orionis regions

description: Spectra of the targets in the Orion OB1 and sigma Orionis regions observed with the VLT/ESPRESSO spectrograph in November-December 2020. These spectra are part of the PENELLOPE Large Program and are obtained close in time to the HST/ULLYSES spectra of the same targets. Here one can find the 1D flux-calibrated and telluric corrected spectra. Each object is observed simultaneously in three arms, blue, redu, redl, and the spectrum of each arm is saved in one file. The units of the spectra are: Flux [erg/s/cm2/AA]; Wavelength [AA]. Each object is observed 3 times, the spectra are thus labelled as ep1, ep2, ep3. Only CVSO90 was observed just one time. Data are public, we ask to ask to the authors of this release, who contributed to the observation preparation and data reduction, whether they want to be included in any publication using these data. The data are presented in Manara et al. (2021), currently in prep. For questions or comments please contact Carlo Manara, cmanara@eso.org
DOI: 10.6084/m9.figshare.13663613.v1
title: Lethal and sublethal effects of long-term cold storage on indoor-reared Harmonia axyridis adults

description: The indoor reared Harmonia axyridis adults were storaed at 6 °C. Aftre storage, the survivals, weight loss during storage, nutrition changes, reproductive capabilities were recored.
DOI: 10.5281/zenodo.4476685
title: HGSVC2 full eQTL results

description: Full summary statistics of the QTL mappings performed on the GEUVADIS and deep 1000GP RNA-sequencing samples presented in the: "Structural variation characterization from the de novo assembly of 64 haplotype-resolved human genomes of diverse ancestry" paper.<br> <br> **Updated release now including sQTL and updated eQTL results
DOI: 10.5281/zenodo.4271574
title: HGSVC2 full eQTL results

description: Full summary statistics of the QTL mappings performed on the GEUVADIS and deep 1000GP RNA-sequencing samples presented in the: "Structural variation characterization from the de novo assembly of 64 haplotype-resolved human genomes of diverse ancestry" paper.<br> <br> **Updated release now including sQTL and updated eQTL results
DOI: 10.5281/zenodo.4478402
title: Gillard Groenvold

description: Dataset containing all the data at the git repo: https://sandve-lab.gitlab.io/gillard-groenvold/. This repo contains the scripts used to perform the analyses and generate the figures for the manuscript "Comparative regulomics reveals pervasive selection on gene dosage following whole genome duplication"
DOI: 10.5281/zenodo.4478401
title: Gillard Groenvold

description: Dataset containing all the data at the git repo: https://sandve-lab.gitlab.io/gillard-groenvold/. This repo contains the scripts used to perform the analyses and generate the figures for the manuscript "Comparative regulomics reveals pervasive selection on gene dosage following whole genome duplication"
DOI: 10.15129/670ff871-9e56-4171-86ce-10ab09e1d402
title: Data for maps of "Comparison of methods to develop risk-targeted seismic design maps"

description: GIS shape files for the data plotted in the maps shown in Figures 14, 15 and 16 of the article "Comparison of methods to develop risk-targeted seismic design maps" as well as a readme file providing information about the data.
DOI: 10.5517/ccdc.csd.cc24t79j
title: CCDC 1990457: Experimental Crystal Structure Determination

description: Related Article: Ricardo J. Ferreira, Gabriella Spengler, Andreas Orthaber, Daniel J. V. A. dos Santos, Maria-José U. Ferreira|2020|Org.Lett.|23|274|doi:10.1021/acs.orglett.0c03647
DOI: 10.5517/ccdc.csd.cc253cc1
title: CCDC 1999232: Experimental Crystal Structure Determination

description: Related Article: Jian-Ping Chen, Yi Li, Chao Liu, Tianyi Wang, Lung Wa Chung, Ming-Hua Xu|2020|Org.Lett.|23|571|doi:10.1021/acs.orglett.0c04099
DOI: 10.5517/ccdc.csd.cc25744q
title: CCDC 2002852: Experimental Crystal Structure Determination

description: Related Article: Jie Ke, Bing Zu, Yonghong Guo, Yingzi Li, Chuan He|2020|Org.Lett.|23|329|doi:10.1021/acs.orglett.0c03833
DOI: 10.5517/ccdc.csd.cc25xrpk
title: CCDC 2023639: Experimental Crystal Structure Determination

description: Related Article: Yuxin Ding, Huihui Yan, Rener Chen, Xuqiong Xiao, Zhiming Wang, Lei Wang, Yongmin Ma|2020|J.Org.Chem.|86|1448|doi:10.1021/acs.joc.0c02155
DOI: 10.5517/ccdc.csd.cc26lc6d
title: CCDC 2043433: Experimental Crystal Structure Determination

description: Related Article: Bin Li, Nana Shen, Yujie Yang, Xinying Zhang, Xuesen Fan|2020|Org.Lett.|23|388|doi:10.1021/acs.orglett.0c03882
DOI: 10.5517/ccdc.csd.cc26lc7f
title: CCDC 2043434: Experimental Crystal Structure Determination

description: Related Article: Bin Li, Nana Shen, Yujie Yang, Xinying Zhang, Xuesen Fan|2020|Org.Lett.|23|388|doi:10.1021/acs.orglett.0c03882
DOI: 10.5517/ccdc.csd.cc26lc8g
title: CCDC 2043435: Experimental Crystal Structure Determination

description: Related Article: Bin Li, Nana Shen, Yujie Yang, Xinying Zhang, Xuesen Fan|2020|Org.Lett.|23|388|doi:10.1021/acs.orglett.0c03882
DOI: 10.15129/48c4bc27-6b12-4a2f-acc9-e70a2b828387
title: Data for maps of "Evaluating alternative approaches for the seismic design of structures"

description: GIS shape files for the data plotted in the maps shown in Figures 9, 10, 11, 13, 18, 19, 21, 22 and 23 of the article "Evaluating alternative approaches for the seismic design of structures" as well as a readme file providing information about the data.
DOI: 10.5517/ccdc.csd.cc26wlyn
title: CCDC 2052322: Experimental Crystal Structure Determination

description: Related Article: Zengqiang Feng, Baoxiang Zhu, Bingbing Dong, Li Cheng, Yunpu Li, Zechao Wang, Junliang Wu|2020|Org.Lett.|23|508|doi:10.1021/acs.orglett.0c04021
DOI: 10.6084/m9.figshare.13634762.v1
title: Data to Support Microhabitat GLMM Matrix

description: This is the dataset for reproducing the GLMM found in "The role of vegetated microhabitats in supporting avian access to arid zone waterholes".<br>
DOI: 10.5281/zenodo.4478582
title: Novel health system strategies for tuberculin skin testing at primary care clinics: datasets.

description: Datasets for journal paper.
DOI: 10.5281/zenodo.4478581
title: Novel health system strategies for tuberculin skin testing at primary care clinics: datasets.

description: Datasets for journal paper.
DOI: 10.6084/m9.figshare.13634768.v1
title: Data to Support Microhabitat Raster Site and Species

description: These data are for reproducing the species detection map as seen in Figure 1. of "The role of vegetated microhabitats in supporting avian access to arid zone waterholes".
DOI: 10.15131/shef.data.13655774
title: How the O2-dependent Mg-protoporphyrin monomethyl ester cyclase forms the fifth ring of chlorophylls

description: Data-files acquired by reverse phase liquid chromatography coupled online to electrospray-ionisation mass spectrometry (Q Exactive HF, Thermo Scientific).(1) 20200213_PJ_GC_MS1: full-scan MS, 500-700 m/z(2) 20200213_PJ_GC_PRM: product ion scans by parallel reaction monitoring for cyclase substrate MgPME, product DV PChlide <i>a</i>, and catalytic intermediates 13<sup>1</sup>-hydroxy-MgPME and 13<sup>1</sup>-keto-MgPME at m/z 598, 611, 614 and 612 respectively.Thermo RAW files are included in mzML format which is readable by open source applications such as SeeMS (http://proteowizard.sourceforge.net/download.html).
DOI: 10.15131/shef.data.13655774.v1
title: How the O2-dependent Mg-protoporphyrin monomethyl ester cyclase forms the fifth ring of chlorophylls

description: Data-files acquired by reverse phase liquid chromatography coupled online to electrospray-ionisation mass spectrometry (Q Exactive HF, Thermo Scientific).(1) 20200213_PJ_GC_MS1: full-scan MS, 500-700 m/z(2) 20200213_PJ_GC_PRM: product ion scans by parallel reaction monitoring for cyclase substrate MgPME, product DV PChlide <i>a</i>, and catalytic intermediates 13<sup>1</sup>-hydroxy-MgPME and 13<sup>1</sup>-keto-MgPME at m/z 598, 611, 614 and 612 respectively.Thermo RAW files are included in mzML format which is readable by open source applications such as SeeMS (http://proteowizard.sourceforge.net/download.html).
DOI: 10.48326/idoc.psup.marssi.hirise.oxia
title: Oxia
DOI: 10.6084/m9.figshare.13536884
title: Source data for "Reentrant liquid condensate phase of proteins is stabilized by hydrophobic and non-ionic interactions"

description: Source data for Potential of mean force profiles in Figure 6 (main paper), and Supplementary Figures 2 and 3 (Supplementary Information). Also contains source data for Supplementary Figure 1.<br>For further details see article, "Reentrant liquid condensate phase of proteins is stabilized by hydrophobic and non-ionic interactions", and associated Supplementary Information.<br>
DOI: 10.6084/m9.figshare.13536884.v2
title: Source data for "Reentrant liquid condensate phase of proteins is stabilized by hydrophobic and non-ionic interactions"

description: Source data for Potential of mean force profiles in Figure 6 (main paper), and Supplementary Figures 2 and 3 (Supplementary Information). Also contains source data for Supplementary Figure 1.<br>For further details see article, "Reentrant liquid condensate phase of proteins is stabilized by hydrophobic and non-ionic interactions", and associated Supplementary Information.<br>