cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28377053.v1
title: <b>Effects of landscape structure on bird functional diversity</b>

description: This dataset and R code support a study about the effects of landscape structure on the functional diversity of bird assemblages in the Upper Magdalena River Valley, Colombia. The research explores how habitat loss and fragmentation impact bird communities by analyzing functional traits across different land-use gradients. Bird abundance data were collected through mist nets, point counts and eBird records, while functional traits were obtained from the AVONET database. The dataset includes morphological and ecological trait data, landscape metrics and functional diversity indices. The provided R scripts enable users to conduct statistical analyses, including functional diversity calculations, generalized linear models (GLMs), and multivariate analyses (PCA, db-RDA, RLQ and fourth-corner analysis).
DOI: 10.6084/m9.figshare.28927307.v1
title: feature parameters

description: We evaluated seven eye‐movement features before and after fatigue using paired t‐tests on mean ± SD values. Sample Entropy on the X-axis decreased from 0.095 ± 0.054 to 0.080 ± 0.048 (p = 0.025) and on the Y-axis from 0.106 ± 0.046 to 0.090 ± 0.043 (p = 0.025), whereas Approximate Entropy and Cross Entropy showed no significant change. Pearson correlation fell sharply from 0.049 ± 0.227 to –0.062 ± 0.201 (p = 0.002), highlighting a pronounced breakdown of linear coupling across axes. Coherence exhibited no clear trend, but NLID(X→Y) declined from 0.736 ± 0.185 to 0.654 ± 0.182 (p = 0.013) and NLID(Y→X) from 0.747 ± 0.151 to 0.698 ± 0.155 (p = 0.030), both statistically significant. Overall, bi‐axial features (Correlation and NLID) proved more sensitive to visual fatigue than single‐axis entropy, markedly enhancing fatigue detection sensitivity; Appendix A provides detailed statistics across all embedding dimensions and delays.
DOI: 10.6084/m9.figshare.5129767.v1
title: Supplementary Material for: Complete Penetrance and Absence of Intrafamilial Variability in a Large Family with Hereditary Leiomyomatosis and Renal Cell Carcinoma

description: <b><i>Background:</i></b> Hereditary leiomyomatosis and renal cell carcinoma (HLRCC) is an autosomal dominant familial disorder due to <i>FH</i> mutation. Despite a considerable increase in information about the genetic background, inter- and intrafamilial phenotypic variability/penetrance are not well documented. <b><i>Objective:</i></b> To describe a large French HLRCC family and provide new data on penetrance and intrafamilial variability. <b><i>Materials and Methods:</i></b> The whole family was contacted for clinical examination, skin biopsy, uterine and kidney imagery and molecular analysis. <b><i>Results:</i></b> The family included 22 members in 3 generations. The second generation consisted of 13 members who were older than the expected age of onset of disease manifestations. Of the 12 available members of this second generation, 6 (1 man and 5 women, aged 44-57 years) had a novel <i>FH</i> mutation. All had the same mild phenotype with cutaneous asymptomatic leiomyomas, uterine fibroids (if women) and no kidney tumor. The other 6 members not bearing the familial mutation had normal clinical and radiological findings. In this second generation, the penetrance was therefore complete, and there was no intrafamilial variability in the clinical expression of the mutation. <b><i>Conclusion:</i></b> This study provides additional data on genotype/phenotype correlation, intrafamilial variability and penetrance that should help to improve prognosis and genetic counseling.
DOI: 10.6084/m9.figshare.7491854.v1
title: BruLex, Content et al. (1990)

description: The Brulex directory includes the different versions fo the BRULEX database. BRULEX was developed about ten years ago, for the purpose of facilitating selection and control of experimental materials in psycholinguistic experiments on lexical processing. It contains a large number of informations that were typed manually by benevolent collaborators. Potential users should be aware that the current version, which hasn't been changed since '89, contains a number of transcription errors and inaccuracies."<br>reference_to_cite: "Content, A., Mousty, P., & Radeau, M. (1990). Brulex. Une base de données lexicales informatisée pour le français écrit et parlé [Brulex, A lexical database for written and spoken French]. <i>L'Année Psychologique, 90</i>, 551-566."<br>url_information: "ULB server ( ftp://ftp.ulb.ac.be/pub/packages/psyling/ )"
DOI: 10.17632/ggfbkdx34f
title: Geochemical Versus Climatic Controls on Soil Organic Carbon

description: We measured SOC and geochemical properties in surface (0 – 10 cm) mineral soil at 198 forested sites across the Boreal Plains, Boreal Shield, and Taiga Shield ecozones in central Canada. We expanded the analysis to include soils from temperate forests in the Mixedwood Plains ecozone of southeastern Canada as well as published data from natural shrublands and grassland.
DOI: 10.17632/hy39dcw5ch
title: Python script for HEDE calculations from DFT data

description: This Python script quantitatively determines the hydrogen-enhanced decohesion (HEDE) of a grain boundary in metals using first-principles density functional theory (DFT) calculations, taking into account the effect of solute segregation. Using as input data the solute segregation energy and the multiple hydrogen trapping energy at a grain boundary and its fracture surfaces, the grain boundary cohesive energy is calculated as a function of the interstitial hydrogen occupancy in the metal at a given temperature.
DOI: 10.6084/m9.figshare.20748463.v1
title: Read me file and data for the study of the link between mitochondrial DNA and metabolic rate.docx

description: Read me file and data files for a project with the aim to optimize a quantitative PCR (qPCR) for the mitochondria cytochrome c oxidase subunit I gene, use the method as a proxy for mitochondrial DNA content, and explore if young trout with lower metabolic rates have a reduced mitochondria content. We extracted liver and muscle tissue of controls (n=19) and warm (n=20) incubated juvenile brown trout and successively optimized a qPCR for mitochondrial DNA.
DOI: 10.6084/m9.figshare.21516207.v1
title: OntoZoning ontology

description: owl file containing the OntoZoning ontology.
DOI: 10.6084/m9.figshare.5123236.v1
title: Supplementary Material for: Not All Inflammatory Markers Are Linked to Kidney Function: Results from a Population-Based Study

description: <i>Background:</i> Several studies have reported increased levels of inflammatory biomarkers in chronic kidney disease (CKD), but data from the general population are sparse. In this study, we assessed levels of the inflammatory markers C-reactive protein (hsCRP), tumor necrosis factor α (TNF-α), interleukin (IL)-1β and IL-6 across all ranges of renal function. <i>Methods:</i> We conducted a cross-sectional study in a random sample of 6,184 Caucasian subjects aged 35–75 years in Lausanne, Switzerland. Serum levels of hsCRP, TNF-α, IL-6, and IL-1β were measured in 6,067 participants (98.1%); serum creatinine-based estimated glomerular filtration rate (eGFR<sub>creat</sub>, CKD-EPI formula) was used to assess renal function, and albumin/creatinine ratio on spot morning urine to assess microalbuminuria (MAU). <i>Results:</i> Higher serum levels of IL-6, TNF-α and hsCRP and lower levels of IL-1β were associated with a lower renal function, CKD (eGFR<sub>creat</sub> &lt;60 ml/min/1.73 m<sup>2</sup>; n = 283), and MAU (n = 583). In multivariate linear regression analysis adjusted for age, sex, hypertension, smoking, diabetes, body mass index, lipids, antihypertensive and hypolipemic therapy, only log-transformed TNF-α remained independently associated with lower renal function (β –0.54 ±0.19). In multivariate logistic regression analysis, higher TNF-α levels were associated with CKD (OR 1.17; 95% CI 1.01–1.35), whereas higher levels of IL-6 (OR 1.09; 95% CI 1.02–1.16) and hsCRP (OR 1.21; 95% CI 1.10–1.32) were associated with MAU. <i>Conclusion:</i> We did not confirm a significant association between renal function and IL-6, IL-1β and hsCRP in the general population. However, our results demonstrate a significant association between TNF-α and renal function, suggesting a potential link between inflammation and the development of CKD. These data also confirm the association between MAU and inflammation.
DOI: 10.17632/j4jgpmnp7m
title: Data for: "Decision-making quality of public managers: contributions from Intelligence and Knowledge Management" published by RAC - Revista de Administração Contemporânea

description: Nos últimos anos, estudos buscaram analisar de que forma os processos de Inteligência e o de Gestão do Conhecimento são compreendidos e aplicados no contexto da Gestão Pública, onde a influência do uso desses processos aparece como um ponto a ser explorado para potencializar a qualidade na decisão. O objetivo geral da pesquisa é analisar como os Gestores Públicos aplicam Inteligência e Gestão do Conhecimento visando maior qualidade na tomada de decisão. Como método, foram realizadas entrevistas com dezessete gestores públicos do Sul do Brasil. Para a análise, foi aplicada a técnica de Análise Comparativa Qualitativa utilizando Conjuntos Fuzzy para identificar caminhos efetivos para tomada de decisão na Administração Pública.
DOI: 10.6084/m9.figshare.22811183.v1
title: Supplementary Data: <strong>A diminutive new basilosaurid whale reveals the trajectory of the cetacean life histories during the Eocene</strong>

description: We have included three supplementary files to accompany our publication in Communications Biology titled <strong>[A diminutive new basilosaurid whale reveals the trajectory of the cetacean life histories during the Eocene]</strong>. These files provide additional information and data related to our phylogenetic analysis and ancestral state reconstructions. <strong>Supplementary Data 1</strong> and <strong>2</strong> are Nexus files that contain the archaeocete-dominated and pelagicete-dominated matrices of Tutcetus rayanensis used in our phylogenetic analysis, respectively. These files can be used to reproduce our analysis and provide additional insight into the evolutionary relationships of Tutcetus rayanensis. <strong>Supplementary Data 3</strong> is a zip file that contains the results from the ancestral state reconstructions (ASRs) on the allcompat trees derived from Bayesian tip-dating analyses. The ASRs provide information on the probable evolutionary history of various morphological and ecological traits in Tutcetus rayanensis and can be used to test hypotheses about the factors that drove the evolution of these traits. We hope that these supplementary files will be helpful to researchers interested in our study and provide a valuable resource for further research in this field.
DOI: 10.6084/m9.figshare.25103738.v1
title: The interplay of biotic and abiotic factors shapes tree seedling growth and root-associated microbial communities

description: Root-associated microbial communities can alleviate plant abiotic stresses, thus potentially supporting adaptation to a changing climate during range expansion. While climate change is extending plant species fundamental niches northward, the distribution and colonization of mutualists (e.g., arbuscular mycorrhizal fungi) and pathogens may constrain plant growth and regeneration. Yet, the degree to which biotic and abiotic factors impact plant performance and associated microbial communities at the edge of their distribution remains unclear. In this study, we used a combination of root microscopy and amplicon sequencing to characterize tree root microbial communities (soil and root mycorrhizae, bacteria, and fungi) of sugar maple seedlings. We also explored the affect of abiotic and biotic factors on root microbial communities and their relationship with seedling growth along two elevation gradients in Quebec, Canada.
DOI: 10.6084/m9.figshare.26541127.v2
title: Single cell transcriptome data from human lymph node stromal cells and immune cells

description: For stromal cell isolation from human LN, tissues were cut into small pieces and collected in RPMI 1640 medium containing 2% FCS, 20 mM HEPES pH 7.2 (Lonza), 0.12 mg/ml Dispase (Roche), 0.16 mg/ml Collagenase P (Roche) and 25 μg/ml DNaseI (Applichem). The tissue pieces were incubated at 37°C for 60 min, with resuspension and collection of the supernatant every 12 min. To enrich for stromal cells, hematopoietic cells and erythrocytes were depleted by incubating the cell suspension with MACS anti-CD45 and anti-CD235a microbeads (Miltenyi Biotec) and FcR Blocking Reagent (Miltenyi Biotec) and passing it through a MACS LS column (Miltenyi Biotec). The unbound single cell suspension was stained for cell sorting. For hematopoietic cell isolation from human LNs and palatine tonsils, tissues were gently smashed through a 26-gauge wire mesh and washed with phosphate buffered saline until further staining for cell sorting.Non-haematopoietic cells from human LNs and haematopoietic cells from human LNs and palatine tonsils were sorted using a BD FACSMelody cell sorter (BD Biosciences). Single cell suspensions were prepared using the 10x Chromium droplet-based system (10x Genomics). Following established commercial protocols for the Chromium Single Cell 3' Reagent Kit (v3 or NextGEM Chemistry), cDNA libraries were generated and subsequently sequenced on an Illumina NovaSeq 6000 at the Functional Genomic Center Zurich. Gene expression was assessed from the sequencing files by running CellRanger (v5.0.1) count, using the Ensembl GRCh38.9 release as a reference. Additional quality control procedures were performed in R v.4.2.1 using the R/Bioconductor package scater (v.1.24.0) (McCarthy et al., 2017) to eliminate low-quality cells with very high or low UMI counts (&gt;2.5 median absolute deviation from the median of all cells), very high or low total number of detected genes (&gt;2.5 median absolute deviation from the median of all cells), and elevated mitochondrial gene content (&gt;2.5 median absolute deviations above the median of all cells). Subsequent analyses were performed separately for samples containing non-hematopoietic cells and hematopoietic cells. Downstream analysis was performed using functions implemented in the Seurat R package (v.4.3.0) (Butler et al., 2018; Hao et al., 2021) and included data normalisation, integration to mitigate batch effects due to different processing sites, data scaling, dimensionality reduction by PCA and UMAP, graph-based clustering and identification of unbiased cluster markers. Clusters were characterised based on the expression of unbiased cluster markers and canonical marker genes described in previous publications.
DOI: 10.6084/m9.figshare.8882567.v7
title: A globally gridded heterotrophic respiration dataset based on field observations

description: There are two datasets in this data repository: the first one, named “RH.RF.720.360.1980.2016.Yearly.nc”, is a global heterotrophic respiration (RH) product with a spatial resolution of with 0.5 degree and a time resolution of one year. The global RH product is modelled by Random Forest algorithm with field observations and environmental variables. The environmental variables include temperature, precipitation, diurnal temperature range from CRU TS v.4.01 from 1901 to 2016; shortwave radiation; soil organic carbon content from soil grid data (Hengl et al., 2017); soil nitrogen content from ORNL DAAC; nitrogen deposition data from the Earth System Models of GISS-E2-R, CCSM-CAM3.5 and GFDL-AM3 from the 1850s to 2000s; Palmer Drought Severity Index (PDSI); and soil water content.The RH product is provided in network Common Data Form, version 4 (netCDF-4, short name: nc) data format (https://www.unidata.ucar.edu/software/netcdf/). The RH product is named using the following regulation:"RH.modelling approaches.spatial resolution.start YYYY. end YYYY.temporal resolution.nc"“RH.RF.720.360.1980.2016.Yearly.nc” means modelled RH flux (g C m<sup>-2</sup> yr<sup>-1</sup>) by Random Forest (RF) with a 0.5° spatial resolution (size 720 along longitude and 360 along latitude) from start year 1980 to end year 2016 with a yearly temporal resolution.The second file, named “dataset.xlsx”, is the field observation from peer review publications combining Global Soil Respiration Database (SRDB), (version 3, Bond-Lamberty and Thomson, 2014), which is publicly available at https://github.com/bpbond/srdb. Besides, the database was further updated using observations collected from the China Knowledge Resource Integrated Database (www.cnki.net) up to March 2018 according to the criteria of SRDB. This dataset is provided in Microsoft Excel in format of “.xlsx”.R codes to produce main results and land area (named land.area.nc, km^2) are available.
DOI: 10.15468/dl.jrnu32
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina silus (Ascanius, 1775)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-0.0352 19.8496,-9.0352 19.8496,-9.0352 10.8496,-0.0352 10.8496,-0.0352 19.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013355-250525065834625/datasets/export for details.
DOI: 10.17632/dkr3cpvf82
title: JETNET 3.0—A versatile artificial neural network package

description: Abstract An F77 package for feed-forward artificial neural network data processing, JETNET 3.0, is presented. It represents a substantial extension and generalization of an earlier release, JETNET 2.0. The package, which consists of a set of subroutines, is focused on multilayer perceptron architectures. As compared to earlier versions it contains a variety of minimization options, measures for monitoring the learning process, limited precision emulation, etc. Also, the reader is provided with a set o... Title of program: JETNET VERSION 3.0 Catalogue Id: ACGV_v2_0 [ACTP] Nature of problem Challenging pattern recognition and non-linear modelling problems within high energy physics, ranging from off-line and on-line parton (or other constituent) identification tasks to accelerator beam control. Standard methods for such problems are typically confined to linear dependencies like Fischer discriminants, principal components analysis and ARMA models. Versions of this program held in the CPC repository in Mendeley Data ACGV_v1_0; JETNET 2.0; 10.1016/0010-4655(92)90099-K ACGV_v2_0; JETNET VERSION 3.0; 10.1016/0010-4655(94)90120-1 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/n737cwf55c
title: Elderly labor supply, endogenous grandparental childcare, and fertility in an OLG model.

description: This repository contains the MATLAB scripts needed to replicate all figures from the article "Elderly labor supply, endogenous grandparental childcare, and fertility in an OLG model", by M. M. Baldi, R. Coppier, and E. Michetti. The goal is to replicate the results and figures published in the article, and each script serves a specific purpose in achieving this goal.

LIST OF FILES:
- figures_1_to_7.m: This script generates the figures presented in the article, specifically Figures 1 to 7.
- figures_8_and_9.m: This script generates Figures 8 and 9 from the article.
- figure_10.m: This script generates Figure 10 from the article.
- figure_11.m: This script generates Figure 11 from the article.
- figures_12_to_14.m: This script generates Figures 12 to 14 from the article.
- constraint_check_region_B.m: This script checks if the constraints are satisfied for region B of the model.
- dynamics.m: This script defines the dynamic evolution of the model, where it computes the paths of key variables over time.
- feasibility_region_B.m: This code solves the constrained nonlinear programming problem (36)–(51) from the article, providing a feasible solution along with its approximation. A posteriori, it also verifies that the obtained feasible solution actually satisfies the original constraints.
- initial_check.m: This script performs an initial check on the parameter values to ensure they meet the condition lambda - beta*delta &gt; 0.
- verify_eq_B.m: This script calculates the equilibrium values for the case B.
- verify_eq_D.m: This script calculates the equilibrium values for the case D.
- README.pdf: This file provides detailed instructions for replicating the figures in the article.
DOI: 10.17632/z5f224gprf
title: Nurses' knowledge, attitude and practice in Peripherally Inserted Central Catheter-related thrombosis prophylactic practices: A multicentric cross-sectional study

description: This data is a multicenter, cross-sectional study measuring knowledge, attitude, and behavior of nurses on PICC-related thrombosis prevention in China. Data collection From April to May 2023, an electronic questionnaire was distributed to the leadership of each participating hospital. Informed consent and standardized instructions for completing the questionnaire were provided, and data were collected through the electronic questionnaire. Each IP address was limited to one submission, and the questionnaire could only be submitted when all items were completed to prevent duplicate entries and ensure data integrity. After the questionnaire data were collected, the data could be automatically exported to an Excel datasheet through the system to avoid the bias of manual data entry. Then the screening data were conducted by two individuals, who carefully reviewed and checked each item of the questionnaire. Options with clear patterns, identical options, or contradictory options were eliminated. All survey data were entered and checked twice for consistency and accuracy. The survey was distributed to 7103 nurses in five regions of China. After excluding unqualified questionnaires, 5544 questionnaires were deemed valid, resulting in a response rate of 78.05%.
DOI: 10.6084/m9.figshare.7836218.v1
title: Positive gene correlates for APOE4- females Hippocampus

description: Positive gene correlates for APOE4- females, Hippocampus<br>
DOI: 10.6084/m9.figshare.8324519.v1
title: Microstructure evolution during the extrusion of a 6351 aluminum alloy tube

description: Abstract The aluminum alloy AA 6351 is a precipitation hardened alloy of the Al-Mg-Si system, additionally containing Mn and Fe. In this study, the microstructural characterization during processing of a thick wall extruded AA 6351 tube was carried out. Several complementary techniques for microstructural characterization were used, such as polarized light optical microscopy, scanning electron microscopy, energy dispersive X-ray spectroscopy, backscattered electron diffraction, X-ray diffraction, hardness and electrical conductivity measurements. The main characteristics of the grains and precipitates were analyzed. After solidification, the presence of a relatively homogeneous grain distribution with an average diameter of about 100 µm and an intermetallic phase with elongated morphology rich in Al, Fe, Mn and Si was observed. During extrusion, the initial grain size was reduced to about one-fifth of the initial diameter and the elongated phase, probably a-Al(Fe,Mn)Si, was fractured and redistributed and the resulting fragments were aligned in the extrusion direction. A peripheral coarse grain zone was detected and analyzed near the outer and inner surfaces of the tube.