cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.nc220/13
title: Total_alignments.zip

description: Sequence alignments of the total (genomes + fragmentary sequences) hepatitis B virus data set. Files include the manual alignment and both UPP alignments (manual genome alignment backbone, PASTA genome alignment backbone).
DOI: 10.5061/dryad.qr971vj/1
title: Appendix 1. Database of birds tested to WNV

description: The database is a compilation of worldwide studies of birds sampled for West Nile Virus through diagnostic techniques of serology and molecular biology. Each observation includes an ID that is associated with the information of the original study. The database consists of 147 published studies including 4995 records which ranged from the years 1959 to 2017 and represented 39 countries
DOI: 10.5061/dryad.s3cc172/1
title: Raw data

description: Raw data for heterophil/lymphocyte ratios and life-history traits of birds.
DOI: 10.5061/dryad.s6743c5/1
title: Prey overview images

description: Overview photos of prey items collected from army ant raids/emigrations/prey caches collected at La Selva Biological Station, Costa Rica. Folder names give collection event IDs (see main article for more information).
DOI: 10.5061/dryad.t7g7cj4/19
title: Filtered VCF file used in study (chr9) - glaberrima as reference genome

description: O. glaberrima reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/20
title: Filtered VCF file used in study (chr10) - glaberrima as reference genome

description: O. glaberrima reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/21
title: Filtered VCF file used in study (chr11) - glaberrima as reference genome

description: O. glaberrima reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/22
title: Filtered VCF file used in study (chr12) - glaberrima as reference genome

description: O. glaberrima reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/23
title: Filtered VCF file used in study (chr1) - barthii as reference genome

description: O. barthii reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/24
title: Filtered VCF file used in study (chr2) - barthii as reference genome

description: O. barthii reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/25
title: Filtered VCF file used in study (chr3) - barthii as reference genome

description: O. barthii reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/26
title: Filtered VCF file used in study (chr4) - barthii as reference genome

description: O. barthii reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/27
title: Filtered VCF file used in study (chr5) - barthii as reference genome

description: O. barthii reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.v3539d2.1/3.1
title: Supplementary movie 3

description: A feeding kid (not naïve) avoiding the ingestion of numerous webworms (non-choice trial). All six webworms remain intact. Video speed increased by ×5.
DOI: 10.5061/dryad.v3539d2.1/4.1
title: Non-choice experiment- webworms (kid #2609)

description: An example of a non-choice experiment- we presented a kid with one bowl at a time (control or webworm leaves) in randomized order. This bowl contains leaves with webworms.
DOI: 10.5061/dryad.v3539d2.1/5.1
title: Non-choice experiment-no webworms (kid #2609)

description: An example of a non-choice experiment- we presented a kid with one bowl at a time (control or webworm leaves) in randomized order. This bowl contains leaves without webworms.
DOI: 10.5061/dryad.v3539d2.1/6.1
title: Dual-choice experiment- Trial 1 (kid #2639)

description: We presented naive kids with a choice between two bowls (in randomized order) containing leaves alone and leaves with three webworms. We repeated this experiment over three consecutive days, in order to examine whether the kids learn to avoid webworms and feed more efficiently with experience. This video shows trial number 1.
DOI: 10.5061/dryad.v3539d2.1/7.1
title: Dual-choice experiment- Trial 2 (kid #2639)

description: We presented naive kids with a choice between two bowls (in randomized order) containing leaves alone and leaves with three webworms. We repeated this experiment over three consecutive days, in order to examine whether the kids learn to avoid webworms and feed more efficiently with experience. This video shows trial number 2.
DOI: 10.5061/dryad.v3539d2.1/8.1
title: Dual-choice experiment- Trial 3 (kid #2639)

description: We presented naive kids with a choice between two bowls (in randomized order) containing leaves alone and leaves with three webworms. We repeated this experiment over three consecutive days, in order to examine whether the kids learn to avoid webworms and feed more efficiently with experience. This video shows trial number 3.
DOI: 10.5061/dryad.v3539d2.2/4.2
title: Non-choice experiment- webworms (kid #2609)

description: An example of a non-choice experiment- we presented a kid with one bowl at a time (control or webworm leaves) in randomized order. This bowl contains leaves with webworms.
DOI: 10.5061/dryad.v3539d2.2/6.2
title: Dual-choice experiment- Trial 1 (kid #2639)

description: We presented naive kids with a choice between two bowls (in randomized order) containing leaves alone and leaves with three webworms. We repeated this experiment over three consecutive days, in order to examine whether the kids learn to avoid webworms and feed more efficiently with experience. This video shows trial number 1.
DOI: 10.5061/dryad.v3539d2.2/8.2
title: Dual-choice experiment- Trial 3 (kid #2639)

description: We presented naive kids with a choice between two bowls (in randomized order) containing leaves alone and leaves with three webworms. We repeated this experiment over three consecutive days, in order to examine whether the kids learn to avoid webworms and feed more efficiently with experience. This video shows trial number 3.
DOI: 10.5061/dryad.v3539d2/1
title: Supplementary movie 1

description: A naive kid presented with a choice between control (left bowl) and webworm leaves (right bowl). The kid began feeding from the webworm leaves (first bite) yet, proceeded to feed from the control leaves. Once the control leaves were completely consumed, the kid fed on the webworm leaves while efficiently avoiding webworm ingestion. Video speed increased by ×5.
DOI: 10.5061/dryad.v3539d2/2
title: Supplementary movie 2

description: Probing behaviour while feeding on leaves with webworms (right bowl). By repeatedly touching the leaves with its muzzle (probing), the kid was able to pick webworm-free leaves. Video speed increased by ×5.
DOI: 10.5061/dryad.v3539d2/3
title: Supplementary movie 3

description: A feeding kid (not naïve) avoiding the ingestion of numerous webworms (non-choice trial). All six webworms remain intact. Video speed increased by ×5.
DOI: 10.5061/dryad.v3539d2/4
title: Non-choice experiment- webworms (kid #2609)

description: An example of a non-choice experiment- we presented a kid with one bowl at a time (control or webworm leaves) in randomized order. This bowl contains leaves with webworms.
DOI: 10.5061/dryad.v3539d2/5
title: Non-choice experiment-no webworms (kid #2609)

description: An example of a non-choice experiment- we presented a kid with one bowl at a time (control or webworm leaves) in randomized order. This bowl contains leaves without webworms.
DOI: 10.5061/dryad.v3539d2/6
title: Dual-choice experiment- Trial 1 (kid #2639)

description: We presented naive kids with a choice between two bowls (in randomized order) containing leaves alone and leaves with three webworms. We repeated this experiment over three consecutive days, in order to examine whether the kids learn to avoid webworms and feed more efficiently with experience. This video shows trial number 1.
DOI: 10.5061/dryad.v3539d2/7
title: Dual-choice experiment- Trial 2 (kid #2639)

description: We presented naive kids with a choice between two bowls (in randomized order) containing leaves alone and leaves with three webworms. We repeated this experiment over three consecutive days, in order to examine whether the kids learn to avoid webworms and feed more efficiently with experience. This video shows trial number 2.
DOI: 10.5061/dryad.v3539d2/8
title: Dual-choice experiment- Trial 3 (kid #2639)

description: We presented naive kids with a choice between two bowls (in randomized order) containing leaves alone and leaves with three webworms. We repeated this experiment over three consecutive days, in order to examine whether the kids learn to avoid webworms and feed more efficiently with experience. This video shows trial number 3.
DOI: 10.17632/3w25k83fgz.1
title: Data for: PROCESSING OF HOUSEHOLD WASTE IN THE BTLSS USING THE WET COMBUSTION METHOD

description: The present study discusses physicochemical methods of organic waste processing in closed biotechnical life support systems (BTLSS). Sanitary and household cotton wastes were processed by the method of wet combustion in hydrogen peroxide using an alternating current electric field – a promising physicochemical method for organic waste processing in the BTLSS. The highest efficiency of the process (in terms of power consumption, duration of the process, and oxidation rate) was achieved in experiments with oxidation of a combination of cotton fabrics and urea-containing wastes such as human urine and feces. The reason for this must be that urea is a reactive aqueous solvent of cellulose.
DOI: 10.17632/vhvkgz6szf.1
title: Data for: Late Holocene volcanic and anthropogenic mercury deposition in the western Central Andes (Lake Chungará, Chile)

description: This file contains the age model, and the mercury (THg), carbon (TC and δ13C), XRF-core scanning and Py-GC/MS analyses used in the manuscript "Late Holocene volcanic and anthropogenic mercury deposition in the western Central Andes (Lake Chungará, Chile)".
DOI: 10.17632/xh4wmzxxg5.1
title: Data for: Agent-based modelling of interactions between air pollutants and greenery using a case study of Yerevan, Armenia

description: 1. List of activities of enterprises of Yerevan, Armenia 2. List of main enterprises of Yerevan, Armenia 3. List of main kindergartens of Yerevan, Armenia 4. List of node coordinates of main roads of Yerevan, Armenia 5. Data on initial radiuses of agent-emissions 6. Data on harmful emissions produced by enterprises of Yerevan, Armenia 7. Data on absorption characteristics of trees planted in Yerevan, Armenia
DOI: 10.17632/xpchr8j3sr.1
title: Data for: ASSESSING SOLAR POTENTIAL AND BATTERY INSTALMENT FOR SELF-SUFFICIENT BUILDINGS WITH SIMPLIFIED MODEL

description: Please find attached data, which was used for calculation for the article “Assessing Solar Potential and Battery Instalment for Self-Sufficient Buildings with Simplified Model.” The presented data was used for the basic parameters of (simplified) model and also for verification of the model.
DOI: 10.5061/dryad.184c1dj/1
title: CI.allnestSUB

description: Lifetime breeding performance and breeding life-span of crested ibis
DOI: 10.5061/dryad.184c1dj/2
title: CI.nest_eachyear_SUB

description: Breeding performance for each years of crested ibis
DOI: 10.5061/dryad.184c1dj/3
title: CI.chick_bodytraits

description: The effects of parental hatching order on chicks body traits
DOI: 10.5061/dryad.184c1dj/4
title: CI_survival rate

description: Adult survival rate of crested ibis
DOI: 10.5061/dryad.1h6h354/1
title: rna-animals-357.vcf

description: Genotypes for 357 RNAseq cows. Used for eQTL analyses.
DOI: 10.5061/dryad.1h6h354/2
title: ht-phenos

description: Herd test phenotypes for 29,350 cows. Used for milk phenotype association analyses.
DOI: 10.5061/dryad.1h6h354/3
title: ht-phenos-names

description: Column names for herd test phenotypes. These are in a separate file per the GCTA input format requirements.
DOI: 10.5061/dryad.1h6h354/4
title: ge-phenos

description: Gene expression phenotypes for 357 animals. Used for eQTL analyses.
DOI: 10.5061/dryad.1h6h354/5
title: ge-phenos-names

description: Column names for gene expression phenotypes. These are in a separate file per the GCTA input format requirements.
DOI: 10.5061/dryad.1h6h354/6
title: HD.rna-animals-357.grm

description: GZipped tar file containing the GRM for the 357 RNAseq animals in GCTA binary format. Based on Illumina BovineHD genotypes. Excludes chromosome 5 to enable MLMA-LOCO analyses.
DOI: 10.5061/dryad.1h6h354/7
title: HD.milk-animals-29350.grm

description: GZipped tar file containing the GRM for the 29,350 milk phenotype animals in GCTA binary format. Based on Illumina BovineHD genotypes. Excludes chromosome 5 to enable MLMA-LOCO analyses.
DOI: 10.5061/dryad.1h6h354/8
title: milk-animals-29350.vcf.gz

description: Genotypes for 29,350 herd test phenotype cows. Used for milk association analyses.
DOI: 10.5061/dryad.1h6h354/9
title: README

description: The readme file describing this dataset.
DOI: 10.5061/dryad.1qh6772/7
title: Bd_Competition_Main_Figures_Analysis_Code

description: R code to produce analyses and base data plots shown in Figures 2 & 3:  Globally invasive genotypes outcompete enzootic amphibian chytrid lineages under coinfection.
DOI: 10.5061/dryad.27tn2gs/4
title: All Baculites δ18O and δ13C Data

description: This supplementary figure shows all δ18O and δ13C data for all baculites sampled during this study on single plots
DOI: 10.5061/dryad.3s6rm0f/1
title: Underwater visual census data from the Poor Knights Islands, New Zealand

description: Data consist of counts of abundances of each of p = 47 species in each of N = 56 sites at the Poor Knights Islands, New Zealand. At each site, divers performed a visual census in each of nine 25 m × 5 m transects, and these transect-level counts were summed to yield a single count value for each species at each site. There were three different times of sampling: September 1998 (15 sites), March 1999 (21 sites) and September 1999 (20 sites). These times of sampling span the point in time when the Poor Knights Islands were classified as a no-take marine reserve (October 1998). 

The data were originally obtained as part of an ongoing monitoring programme of the status of fish communities for the Poor Knights Islands, funded by New Zealand’s Department of Conservation (DoC). Initial analyses of these data appear in the following report, which should be cited directly if these data are to be used in any other context.

Willis, T.J. & Denny, C.M. (2000). Effects of Poor Knights Islands Marine Reserve on demersal fish populations. Report to the Department of Conservation, Research Grant No. 2519, Leigh Marine Laboratory, University of Auckland, New Zealand.
DOI: 10.5061/dryad.3sg4g82/1
title: Ranavirus Transmission Dataset
DOI: 10.5061/dryad.3sg4g82/2
title: Pond Survey Dataset
DOI: 10.5061/dryad.3sg4g82/3
title: Scavenger Effectiveness Trials Dataset
DOI: 10.5061/dryad.3sg4g82/4
title: Functional Response Dataset
DOI: 10.5061/dryad.45ng8/2
title: Data of behavioral experiment using alive weevils
DOI: 10.5061/dryad.50g8322/1
title: Environmental Data (Ley et al. 2018)
DOI: 10.5061/dryad.5p9m3q2/1
title: Code and data for Strauss & Holekamp (2019) Inferring longitudinal hierarchies paper

description: Please see the README file for details. Files are numbered according to the order of their appearance in the analysis. File paths in the scripts will need to be changed in order for the code to run properly.
DOI: 10.5061/dryad.7264p69/1
title: Five_assemblages

description: This dataset for five macroinvertebrate assemblages is simulated based on large samples collected from minimally-disturbed streams in Pacific Northwest US, and first published in Cao and Hawkins (2005). Each assemblage is consisted of 11 samples (e.g., CM00 - CM10 for Assemblage CM). There are 70 taxa in total across the five assemblages.
DOI: 10.5061/dryad.77b2422/1
title: teak_tectona_grandis_26Jun2018_7GlFM_fmt_tp.fa

description: fasta sequences of the assembly
DOI: 10.5061/dryad.77b2422/2
title: teak.working_models_HiC.cdna_con_sorted.fa

description: cDNA sequences of all isoforms of the working gene set
DOI: 10.5061/dryad.77b2422/3
title: teak.working_models_HiC.cds_con_sorted.fa

description: CDS of all isoforms of the working gene set
DOI: 10.5061/dryad.77b2422/4
title: teak.working_models_HiC.pep_con_sorted.fa

description: Peptide sequence of all isoforms of the working gene set
DOI: 10.5061/dryad.77b2422/5
title: teak.working_models_HiC_fmtDes_con_sorted.gff

description: GFF of all isoforms of the working gene set
DOI: 10.5061/dryad.8h685j0/1
title: Summary of simulation output

description: This file contains summary output for each replicate of each model scenario, as well as pattern-matching statistics for each pattern-matching approach used (pass/fail, rank sum, Total Indicator, Mahalanobis).
DOI: 10.5061/dryad.8h685j0/2
title: Example_xml_inputs

description: This zip file contains a set of xml input files needed to run SEARCH. This set includes 5 replicates for 3 different bound rate scenarios for the model that allows for declining habitat selectivity over time.
DOI: 10.5061/dryad.950km35/1
title: Raw fastq files of 16S rRNA gene sequences

description: The folder contains the sequencing data (raw 16S rRNA gene fastq sequences from a paired-end run on an Illumina MiSeq) used in analyses of the respective publication.
DOI: 10.5061/dryad.bs2vt87/1
title: Behavioural observations of Christmas Island flying-foxes

description: This data was collected in the field. Individuals were observed for 30 minutes, and behaviour was recorded every minute. Column description: 'nr' refers to the observed individual. 'Tree' is the roost tree where the focal individual was roosting. 'locality' refers to the roost site where the focal individual was roosting. There were 5 different roost sotes. 'Weather' has three different categories: R=rainy, S=sunny, C=cloudy. 'TreeSpecies' is the species of tree the focal individual was roosting in. 'foliage' has three categories: O=open, H=halfopen, D=dense. 'Height' refers to the roost height of the focal individual. 'Ants' refers to the number of ants in the tree of the focal individual. 'group.alone' refers to whether the focal individual was roosting alone (a), or in a group g), and Group.Size refers to the number of individuals in the group. The last column is 'Behaviour' which refers to the observed behaviour
DOI: 10.5061/dryad.gb90p1c.1
title: Data from: The pyriform egg of the Common Murre (Uria aalge) is more stable on sloping surfaces
DOI: 10.5061/dryad.gh830j7/3
title: Metadata

description: Metadata containing information on ID and code for each specimens. The file also contains metadata on the different flower strips sampled (e.g. plant species richness)
DOI: 10.5061/dryad.gh830j7/4
title: MG raw data

description: Raw data of the mitogenomic run. The names of the communities are included into the file names.
DOI: 10.5061/dryad.gh830j7/5
title: MB raw data

description: Barcodes and primer sequences are available in the mapping file formatted for QIIME1.
DOI: 10.5061/dryad.h07s9d1/1
title: TableS1

description: Table S1. Average male and female body part sizes and the derived SSD indices used in comparative analyses. BL = body length; CW = carapace width; CL = carapace length; SSD = sexual size dimorphism as a female to male size ratio.
DOI: 10.5061/dryad.h07s9d1/2
title: TableS2

description: Table S2. Female web characteristics for a subset of nephilids in Table S1. The mean ± standard deviation, calculated from field web measurements, were used in comparative analyses.
DOI: 10.5061/dryad.h07s9d1/3
title: TableS3

description: Table S3. Data for deep reconstruction of sexual size dimorphism in Figure 6.
DOI: 10.5061/dryad.h07s9d1/4
title: Appendix S1

description: Appendix S1. R codes and results of comparative analyses.
DOI: 10.5061/dryad.m4s45t4/1
title: Dryad-data

description: Information on pollen sample location, plant dataset used for richness calculations and richness data in Open Document Format. Metadata included on the last sheet of the file.
DOI: 10.5061/dryad.m7qf972/1
title: Intinerary_PS

description: List of stationary sites and period of residency for pallid swifts tracked with geolocators
DOI: 10.5061/dryad.p5t5gh1/10
title: Supplementary Archive 1

description: Files included in Supplementary Archive 1, see Evangelista_et_al_README_DRYAD.pdf
DOI: 10.5061/dryad.p5t5gh1/11
title: Supplementary Archive 2

description: Files included in Supplementary Archive 2, see Evangelista_et_al_README_DRYAD.pdf
DOI: 10.5061/dryad.p5t5gh1/9
title: README

description: README of Supplementary Archives and included files of Evangelista et al. 2019
DOI: 10.5061/dryad.qf0k11c/1
title: Weeds diversity, weed abundance and crop sequences diversity

description: This file describes weed richness and abundance as well as crop sequence diversity and management intensity for around 200 arable fields monitored in French between 2002 and 2010. We computed the diversity and abundance of weeds for both pluri-annual (i.e. five consecutive cropping seasons) and annual (i.e. winter cereal cropping season) species pools. Annual species pools were monitored at the beginning of a cropping season (T1) or at the middle (T2), both in presence or absence of herbicide sprayed.
DOI: 10.5061/dryad.t62h737/1
title: Raw Data

description: Raw data of the size of the slime molds at each time step on each branches for each replicate
DOI: 10.5061/dryad.t7g7cj4/28
title: Filtered VCF file used in study (chr6) - barthii as reference genome

description: O. barthii reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/29
title: Filtered VCF file used in study (chr7) - barthii as reference genome

description: O. barthii reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/30
title: Filtered VCF file used in study (chr8) - barthii as reference genome

description: O. barthii reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/31
title: Filtered VCF file used in study (chr9) - barthii as reference genome

description: O. barthii reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/32
title: Filtered VCF file used in study (chr10) - barthii as reference genome

description: O. barthii reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/33
title: Filtered VCF file used in study (chr11) - barthii as reference genome

description: O. barthii reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.t7g7cj4/34
title: Filtered VCF file used in study (chr12) - barthii as reference genome

description: O. barthii reference genome based SNP calls. Filtering process described in paper.
DOI: 10.5061/dryad.v3539d2.2/10.2
title: Non-choice experiment
DOI: 10.5061/dryad.v3539d2.2/9.2
title: Dual choice trials
DOI: 10.17632/3y73wnxf5d.1
title: Data for: Late Cretaceous to Early Eocene geological history of the eastern Ionian Basin, southwestern Greece: An integrated sedimentological and bed thickness statistics analysis

description: Bouma subdivisions in the studied Upper Cretaceous calciturbiditic sequence in Araxos area.
DOI: 10.17632/btv2xpnv5x.1
title: Data for: A new 3.59 Ga magmatic suite and a chondritic source to the east Pilbara Craton

description: All data tables in an Excel format (.xlsx)
DOI: 10.5061/dryad.2j3c073/1
title: Data and R codes associated with the paper "Unraveling the seasonal epidemiology of pneumococcus"

description: The zipped folder contains the data and the R codes needed to perform the estimation of the models described in Domenech de Cellès et al., "Unraveling the seasonal epidemiology of pneumococcus", PNAS.
DOI: 10.5061/dryad.2kp7vr8/1
title: SI File - Genomes and Pipelines

description: Genome data and the scripts associated with the RAxML analysis.