cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5318980.v2
title: An injectable <i>in situ</i> gel with cubic and hexagonal nanostructures for local treatment of chronic periodontitis

description: Periodontitis is a chronic bacterial infection, and its effective treatment is dependent on the retention of antibiotics of effective concentrations at the periodontal pockets. In this study, a solution–gel based inverse lyotropic liquid crystalline (LLC) system was explored to deliver metronidazole to the periodontal pockets for local treatment of periodontitis. It was found that the metronidazole-loaded LLC precursor spontaneously transformed into gel in the presence of water in the oral cavity. The low viscosity of the precursor would allow its penetration to the rather difficult to reach infection sites, while the adhesiveness and crystalline nanostructures (inverse bicontinuous cubic Pn3m phase and inverse hexagonal phase) of the formed gel would permit its firm adhesion to the periodontal pockets. The LLC system provided sustained drug release over one week <i>in vitro</i>. Results from <i>in vivo</i> study using a rabbit periodontitis model showed that the LLC system was able to maintain the metronidazole concentrations in the periodontal pockets above the minimum inhibition concentration for over 10 days without detectable drug concentration in the blood. Owing to the spontaneous solution–gel transition in the periodontal pockets and unique liquid crystalline nanostructures, the LLC <i>in situ</i> gel provided effective treatment of periodontitis for a prolonged period of time with reduced systematic side effects, compared to metronidazole suspension which was effective for 24 h with detectable metronidazole concentrations in the blood after 6 h.
DOI: 10.6084/m9.figshare.22620535.v1
title: Additional file 3 of Statistical methods for exploring spontaneous adverse event reporting databases for drug-host factor interactions

description: Additional file 3. Results for all tests for analgesics.
DOI: 10.17630/86f9965a-ce9b-4222-bba5-5bd923f2331e
title: Catalytic Enantioselective Acyl Transfer for the Synthesis of Atropisomers (thesis data)
DOI: 10.6084/m9.figshare.22620541.v1
title: Additional file 4 of Statistical methods for exploring spontaneous adverse event reporting databases for drug-host factor interactions

description: Additional file 4. Results for all tests for liver toxicity.
DOI: 10.6084/m9.figshare.22620541
title: Additional file 4 of Statistical methods for exploring spontaneous adverse event reporting databases for drug-host factor interactions

description: Additional file 4. Results for all tests for liver toxicity.
DOI: 10.6084/m9.figshare.6367622.v1
title: Additional file 2: of The long non-coding RNA PTTG3P promotes cell growth and metastasis via up-regulating PTTG1 and activating PI3K/AKT signaling in hepatocellular carcinoma

description: Table S2. The raw data for microarry analysis in 3 HCC tumor tissues and adjacent normal tissues. (XLS 13300 kb)
DOI: 10.17630/a846f743-971e-42f9-bd6f-3fd3b9a093ea
title: Pelagic larval duration of the European oyster Ostrea edulis (theis data)

description: The obligatory pelagic larval duration of Ostrea edulis was investigated in laboratory experiments at three temperatures: 13, 18 and 25 degrees. Moreover, the larvaes ability to delay metamorphosis in the absence of adequate settlement cues, thereby prolonging the pelagic duration, was investigated during 14 days. The datasets are stored in a relational database in MS Access.
DOI: 10.17630/69501ecc-2e4e-45f6-ba3b-7049bcfbf49b
title: Settlement preferences of the European oyster Ostrea edulis (thesis data)

description: The settlement preferences of the European oyster Ostrea edulis were analysed in laboratory experiments. Larvae were presented with following treatments: conspecific spat (FSW-SP), biofilm stones (B-ST), control stones (ST), food (FSW-F), filtered seawater (FSW), unfiltered seawater (USW), shell in filtered seawater (FSW-SU), shell in unfiltered seawater (USW-SU). Settlement of larvae and larval behaviour were observed over 72h at regular time intervals (~2.5h). The dataset is stored in a relational database in MS Access.
DOI: 10.6084/m9.figshare.12134829
title: Additional file 8 of Exploring the key microbial changes in the rhizosphere that affect the occurrence of tobacco root-knot nematodes

description: Additional file 8: Table S7. Difference fungi between Bs and P_D.
DOI: 10.34740/kaggle/dsv/7587196
title: JUIVCDv1: Indian vehicle classification
DOI: 10.6084/m9.figshare.12134817.v1
title: Additional file 6 of Exploring the key microbial changes in the rhizosphere that affect the occurrence of tobacco root-knot nematodes

description: Additional file 6: Table S5. Difference bacteria between Pf and P_D.
DOI: 10.6084/m9.figshare.12134898.v1
title: Additional file 5 of Identification of CELSR2 as a novel prognostic biomarker for hepatocellular carcinoma

description: Additional file 5: Table S2. Data of mutation diagram of CELSR2 in HCC.
DOI: 10.6084/m9.figshare.22618747.v1
title: Additional file 5 of Protein disulfide-isomerase A4 confers glioblastoma angiogenesis promotion capacity and resistance to anti-angiogenic therapy

description: Additional file 5: Supplementary Table 2. The substrate proteins of PDIA4 we identified
DOI: 10.6084/m9.figshare.12134811
title: Additional file 5 of Exploring the key microbial changes in the rhizosphere that affect the occurrence of tobacco root-knot nematodes

description: Additional file 5: Table S4. Difference bacteria between Bs and P_D.
DOI: 10.6084/m9.figshare.12134784.v1
title: Additional file 1 of Exploring the key microbial changes in the rhizosphere that affect the occurrence of tobacco root-knot nematodes

description: Additional file 1: Table S1. The basic physical and chemical properties of each soil sample.
DOI: 10.6084/m9.figshare.12134781.v1
title: Additional file 10 of Exploring the key microbial changes in the rhizosphere that affect the occurrence of tobacco root-knot nematodes

description: Additional file 10: Table S9. Difference fungi between Pl and P_D.
DOI: 10.6084/m9.figshare.12134823
title: Additional file 7 of Exploring the key microbial changes in the rhizosphere that affect the occurrence of tobacco root-knot nematodes

description: Additional file 7: Table S6. Difference bacteria between Pl and P_D.
DOI: 10.6084/m9.figshare.12134817
title: Additional file 6 of Exploring the key microbial changes in the rhizosphere that affect the occurrence of tobacco root-knot nematodes

description: Additional file 6: Table S5. Difference bacteria between Pf and P_D.
DOI: 10.6084/m9.figshare.12134829.v1
title: Additional file 8 of Exploring the key microbial changes in the rhizosphere that affect the occurrence of tobacco root-knot nematodes

description: Additional file 8: Table S7. Difference fungi between Bs and P_D.
DOI: 10.6084/m9.figshare.12134898
title: Additional file 5 of Identification of CELSR2 as a novel prognostic biomarker for hepatocellular carcinoma

description: Additional file 5: Table S2. Data of mutation diagram of CELSR2 in HCC.
DOI: 10.6084/m9.figshare.12134811.v1
title: Additional file 5 of Exploring the key microbial changes in the rhizosphere that affect the occurrence of tobacco root-knot nematodes

description: Additional file 5: Table S4. Difference bacteria between Bs and P_D.
DOI: 10.6084/m9.figshare.12134835
title: Additional file 9 of Exploring the key microbial changes in the rhizosphere that affect the occurrence of tobacco root-knot nematodes

description: Additional file 9: Table S8. Difference fungi between Pf and P_D.
DOI: 10.6084/m9.figshare.12134835.v1
title: Additional file 9 of Exploring the key microbial changes in the rhizosphere that affect the occurrence of tobacco root-knot nematodes

description: Additional file 9: Table S8. Difference fungi between Pf and P_D.
DOI: 10.6084/m9.figshare.7943465
title: Additional file 1: of Biomarkers of tuber intake

description: Figure S1. Flow diagram of structured literature search for BFIs of sweet potato. Figure S2. Flow diagram of structured literature search for BFIs of yam. Figure S3. Flow diagram of structured literature search for BFIs of cassava. Figure S4. Flow diagram of structured literature search for BFIs of Jerusalem artichoke. (ZIP 1.70 mb)
DOI: 10.23729/32583bd0-38cd-4532-a8d6-fc9dc5967dce
title: DAPlankton: a benchmark dataset for fine-grained domain adaptation

description: The DAPlankton dataset consists of over 110k expert-labeled plankton images. The data is divided into two subsets: DAPlankton_LAB and DAPlankton_SEA. DAPlankton_LAB consists of images captured from multiple mono-specific phytoplankton cultures, which were analysed using three different imaging instruments: Imaging FlowCytoBot (IFCB), CytoSense (CS) flow cytometer, and FlowCam (FC) imaging microscope each producing cropped images with one plankton particle in each. An expert further verified the class of each image, ensuring that there was no cross contamination between different cultures. This process resulted in a balanced dataset with negligible label uncertainty. DAPlankton_SEA consists of images captured from water samples collected from the Baltic Sea using two different imaging instruments: IFCB and CS. Each image was manually labeled by an expert. DAPlankton_SEA provides a realistic and more challenging dataset with a large class imbalance and natural intra-class variance.

If you use this dataset in your research, we kindly ask that you reference the following paper:

D. Batrakhanov, T. Eerola, K. Kraft, L. Haraguchi, L. Lensu, S. Suikkanen, M.T. Camarena-Gomez, J. Seppälä H. Kälviäinen, DAPlankton: Benchmark Dataset for Multi-instrument Plankton Recognition via Fine-grained Domain Adaptation, arXiv, 2024.


**Data composition**

DAPlankton_LAB contains, in total, 47 471 images from 15 phytoplankton species and 3 different domains (imaging instruments). The number of images per class-domain combination varies between 286 and 2618. The list of classes (species) is as follows:

- Aphanizomenon flosaquae
- Apocalathium malmogiense
- Chrysotila roscoffensis
- Diatoma tenuis
- Gymnodinium corollarium
- Kryptoperidium foliaceum
- Levanderina fissa
- Melosira arctica
- Nephroselmis pyriformis
- Peridiniella catenata
- Pseudopedinella sp.
- Rhinomonas nottbecki
- Rhodomonas salina
- Teleaulax acuta
- Tetraselmis sp.

DAPlankton_SEA contains, in total, 64 453 images from 31 plankton classes and 2 different domains. The number of images per class-domain combination varies between 5 and 12 280. The list of classes is as follows:

- Aphanizomenon flosaquae
- Centrales sp
- Chaetoceros sp
- Chaetoceros sp (single)
- Chlorococcales
- Chroococcales
- Ciliata
- Cryptomonadales
- Cryptophyceae Teleaulax
- Cyclotella choctawhatcheeana
- Dinophyceae
- Dinophysis acuminata
- Dolichospermum Anabaenopsis
- Dolichospermum Anabaenopsis (coiled)
- Euglenophyceae
- Eutreptiella sp
- Gymnodiniales
- Gymnodinium like
- Heterocapsa rotundata
- Heterocapsa triquetra
- Heterocyte
- Katablepharis remigera
- Mesodinium rubrum
- Monoraphidium contortum
- Nitzschia paleacea
- Nodularia spumigena
- Oocystis sp
- Pseudopedinella sp.
- Pyramimonas sp.
- Skeletonema marinoi
- Snowella Woronichinia
DOI: 10.17630/6f373a42-75cf-438b-bd90-6e0a429142cc
title: 1,3,4-Oxadiazole-based Deep-blue Thermally Activated Delayed Fluorescence Emitters for Organic Light Emitting Diodes (dataset)
DOI: 10.6084/m9.figshare.12134922
title: Additional file 8 of Identification of CELSR2 as a novel prognostic biomarker for hepatocellular carcinoma

description: Additional file 8: Table S5. The significant gene sets positively and negatively correlated with CELSR2 in LinkedOmics database.
DOI: 10.17630/31d75f26-ea55-42c9-9e06-c19bb4325200
title: Fast Room Temperature Lability of Aluminosilicate Zeolites (dataset)

description: Aluminosilicate zeolites are traditionally used in high-temperature applications at low water vapour pressures where the zeolite framework is generally considered to be stable and static. Increasingly, zeolites are being considered for applications under milder aqueous con-ditions. However, it has not yet been established how neutral liquid water at mild conditions affects the stability of the zeolite framework. Here, we show that covalent bonds in the zeolite chabazite (CHA) are labile when in contact with neutral liquid water, which leads to partial but fully reversible hydrolysis without framework degradation. We present ab initio calculations that predict novel, energetically viable reaction mechanisms by which Al-O and Si-O bonds rapidly and reversibly break at 300 K. By means of solid-state NMR, we confirm this predic-tion, demonstrating that isotopic substitution of 17O in the zeolitic framework occurs at room temperature in less than one hour of contact with enriched water.
DOI: 10.17630/880c2780-120c-48f8-9ccb-aff048397d57
title: Project Management in Social Data Science (digital outputs: Social Data Science Scorecard Deck) (dataset)

description: Social Science Scorecard Deck is an agile project management tool for social data science. The following file types and formats are included: - A readme web-page that provides detailed instructions for using the files : .html (can be opened in any browser); - A JSON file containing the contents of the Scorecard Deck: .json (can be opened with a text editor); - Google App Script files and an HTML file containing the code to create an automated representation of the Scorecard Deck in Google Sheets: .gs and .html (can be opened with a text editor; can be run as a Google Script project bounded to a Google Spreadsheet file); - An Office Open XML file containing a template of a title sheet for a spreadsheet representation of the Scorecard Deck: .xlsx (can be opened with commonly used spreadsheet software such as Microsoft Excel, Google Sheets, LibreOffice Calc).
DOI: 10.6084/m9.figshare.7943615
title: Additional file 2: of How exposure to ALS-inhibiting gametocide tribenuron-methyl induces male sterility in rapeseed

description: Dataset S1. The list of DETs between TBM-treatment and the control. The DETs were selected with FDR &lt;â 0.05 and fold change â Ľ2. The gene name and symbol, TPM value, fold change, p value, gene sequence, GO term, KEGG pathway, BLAST hit in the NCBI database, and functional annotation in the UniProt database were included. (XLSX 163 kb)
DOI: 10.17630/9671bf64-5774-4116-a0c9-e7fbdb83716b
title: Facile, Room-Temperature 17O Enrichment of Zeolite Frameworks Revealed by Solid-State NMR Spectroscopy (dataset)
DOI: 10.34808/bbj9-6650
title: New 3D printable filaments with nanodiamonds, physicochemical additives characteristics and electrochemical activity

description: This dataset contains the physicochemical analyses (XRD, Raman spectroscopy, BET analyses) and electrochemical analyses (CV, EIS) for a new 3D-printable composite has been developed dedicated to electroanalytical applications. Two types of diamondised nanocarbons - detonation nanodiamonds (DNDs) and boron-doped carbon nanowalls (BCNWs) - were added as fillers in poly(lactic acid) (PLA)-based composites to extrude 3D filaments. The aim was to thoroughly describe and understand the interactions between the composite components and how they affect the rheological, mechanical and thermal properties, and electrochemical characteristics of filaments and material extrusion printouts. The 3D printed electrodes were first characterized vs ferrocyanide redox probe kinetics and next used for dopamine detection. The manuscript was published in: https://doi.org/10.1007/s00604-023-05940-7
DOI: 10.15156/bio/sh0960052.09fu
title: SH0960052.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0960053.09fu
title: SH0960053.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0960054.09fu
title: SH0960054.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0960055.09fu
title: SH0960055.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0960056.09fu
title: SH0960056.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0960057.09fu
title: SH0960057.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0960058.09fu
title: SH0960058.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.