cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dg5whj
title: Occurrence Download

description: A dataset containing 91710 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pelecanus occidentalis Linnaeus, 1766"
 ]
}

 The dataset includes 91710 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0179395-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fnsnlj
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Jonopsidium savianum Ball ex Arc."
 ]
}

 The dataset includes 65 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000484-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r2ft5x
title: Occurrence Download

description: A dataset containing 6301 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Rosa woodsii Lindl."
 ]
}

 The dataset includes 6301 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0326621-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ppkfd
title: Occurrence Download

description: A dataset containing 91710 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pelecanus occidentalis Linnaeus, 1766"
 ]
}

 The dataset includes 91710 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0179411-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hbep43
title: Occurrence Download

description: A dataset containing 229 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dracophyllum politum (Cheeseman) Cockayne"
 ]
}

 The dataset includes 229 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000484-170925132151566/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.toxlrp
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hynobius unisacculus Min, Baek, Song, Chang & Poyarkov, 2016"
 ]
}

 The dataset includes 57 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024764-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.df42d8
title: Occurrence Download

description: A dataset containing 3407 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amphicyonidae"
 ]
}

 The dataset includes 3407 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002739-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1cioy1
title: Occurrence Download

description: A dataset containing 19803 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eichhornia crassipes (Mart.) Solms"
 ]
}

 The dataset includes 19803 records from 419 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024316-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a8ucnp
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "PublishingOrg is ada9d123-ddb4-467d-8891-806ea8d94230",
 "TaxonKey is Hydrochoerus Brisson, 1762"
 ]
}

 The dataset includes 43 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0179386-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aweipl
title: Occurrence Download

description: A dataset containing 5527 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paspalum plicatulum Michx."
 ]
}

 The dataset includes 5527 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000484-171109162308116/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.82pf95
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Machine Observation"
 ]
 },
 "Geometry POLYGON((-65.83008 -60.19616,-16.34766 -60.67318,-15.11719 -42.81152,-13.71094 -12.89749,-31.28906 10.83331,-43.24219 24.84657,-38.32031 36.87962,-25.83984 65.58572,-36.38672 67.54217,-47.63672 67.54217,-68.68652 67.25506,-69.16992 65.54937,-77.21191 64.68032,-78.00293 63.33241,-77.3877 62.20651,-72.68555 59.04055,-70.13672 53.85253,-76.24512 48.95137,-78.83789 41.83683,-82.44141 37.30028,-95.80078 33.57801,-101.77734 27.21556,-98.10791 18.16673,-94.81201 17.28771,-90.06592 14.96601,-87.60498 15.00846,-85.18799 13.94473,-84.35303 10.2933,-82.33154 8.68964,-81.10107 8.47237,-80.52979 8.6462,-79.29932 9.25394,-78.46436 8.9936,-77.03613 7.4932,-69.60937 2.1089,-50.97656 -14.26438,-68.99414 -40.5138,-72.1582 -51.01375,-68.4668 -54.41893,-65.83008 -60.19616))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bathyplotes bigelowi Deichmann, 1940"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197542-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bacslr
title: Occurrence Download

description: A dataset containing 5392698 species occurrences available in GBIF matching the query:
{
 "or" : [
 "Country is Libya",
 "Country is Egypt",
 "Country is Tunisia",
 "Country is Algeria",
 "Country is Morocco",
 "Country is Chad",
 "Country is Namibia",
 "Country is Eritrea",
 "Country is Madagascar"
 ]
}

 The dataset includes 5392698 records from 1504 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000484-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.19338053.v1
title: Supplementary Data (raw data) from Staring death in the face: chimpanzees' attention towards conspecific skulls and the implications of a face module guiding their behaviour

description: Total fixation times for all experiments
DOI: 10.6084/m9.figshare.19338053
title: Supplementary Data (raw data) from Staring death in the face: chimpanzees' attention towards conspecific skulls and the implications of a face module guiding their behaviour

description: Total fixation times for all experiments
DOI: 10.5281/zenodo.6344868
title: Supplemental Materials for "Schwarzschild and Ledoux are equivalent on evolutionary timescales"

description: This Zenodo repository contains a .tar file which contains datasets which can be used along with the code in the associated Github repository (https://github.com/evanhanders/schwarzschild_or_ledoux, an copy of which is also included here as a .tar file) to create all of the static figures in the paper. The figures can be recreated with this data by using the Python scripts in the schwarzschild_or_ledoux/publication_figures/ folder of the Git repository. The data are as follows:<br> <br> <strong>Figure 1</strong>: early_slices.h5, late_slices.h5 - 2D slices through various planes in the simulation which show the dynamics at a few early and late times in the simulation. early_profiles.h5, late_profiles.h5 - 1D horizontally-average profiles at the times associated with the dynamics in the 'slices' files. early_scalars.h5, late_scalars.h5 - files that contain some various scalar info (e.g., where the boundary is determined by the Schwarzschild and Ledoux criteria) for the early and late dynamics. <strong>Figure 2</strong> - 1D horizontally-averaged profiles for the full simulation in the paper are output into the "merged_profiles.h5" file. The output cadence is once every freefall time, so there are roughly 20,000 time points for each profile. figure 2 uses the initial state and the state at t = 17,000. <strong>Figure 3 </strong>- scalar_data.h5 contains scalar values inferred from merged_profiles.h5 at each point in time. This file can be re-created by the user by using the 'profile_to_scalar.py' file inside of the publication_figures/ folder in the repository.
DOI: 10.5281/zenodo.6230635
title: Supplemental Materials for "Schwarzschild and Ledoux are equivalent on evolutionary timescales"

description: This Zenodo repository contains a .tar file which contains datasets which can be used along with the code in the associated Github repository (https://github.com/evanhanders/schwarzschild_or_ledoux, an copy of which is also included here as a .tar file) to create all of the static figures in the paper. The figures can be recreated with this data by using the Python scripts in the schwarzschild_or_ledoux/publication_figures/ folder of the Git repository. The data are as follows:<br> <br> <strong>Figure 1</strong>: early_slices.h5, late_slices.h5 - 2D slices through various planes in the simulation which show the dynamics at a few early and late times in the simulation. early_profiles.h5, late_profiles.h5 - 1D horizontally-average profiles at the times associated with the dynamics in the 'slices' files. early_scalars.h5, late_scalars.h5 - files that contain some various scalar info (e.g., where the boundary is determined by the Schwarzschild and Ledoux criteria) for the early and late dynamics. <strong>Figure 2</strong> - 1D horizontally-averaged profiles for the full simulation in the paper are output into the "merged_profiles.h5" file. The output cadence is once every freefall time, so there are roughly 20,000 time points for each profile. figure 2 uses the initial state and the state at t = 17,000. <strong>Figure 3 </strong>- scalar_data.h5 contains scalar values inferred from merged_profiles.h5 at each point in time. This file can be re-created by the user by using the 'profile_to_scalar.py' file inside of the publication_figures/ folder in the repository.
DOI: 10.48490/fetp-8694
title: AR6 SROCC Data for Figure SPM.4: Extreme sea level events
DOI: 10.6084/m9.figshare.19338095.v1
title: Psilocybe and Strophariacea ITS tree in newick format

description: Psilocybe and Strophariacea ITS tree in newick format
DOI: 10.6084/m9.figshare.19338095
title: Psilocybe and Strophariacea ITS tree in newick format

description: Psilocybe and Strophariacea ITS tree in newick format
DOI: 10.25345/c5s17sw57
title: MassIVE MSV000089033 - Qtof_WS_metabolomics_evaluation_Set
title: Qtof_WS_metabolomics_evaluation_Set for metabolomics annotation
DOI: 10.6073/pasta/8b28a8354ae990d6b3d33e391c04640f
title: Demographics of high marsh consumers from Breder trap transect collections in tidal creeks associated with long term fertilization experiments, Rowley, MA

description: At PIE, mummichog (Fundulus heteroclitus) use the spring-cycle high tides to access the flooded high marsh platform and eat invertebrate prey, coupling the high marsh and aquatic creek food webs by gathering energy produced on the high marsh and making it available to the aquatic food web. Changes in the geomorphology of saltmarsh creek edges greatly influence the survival, biomass, and resource use of mummichog populations. Here, we capture animals using Breder traps to quantify the communities accessing the high marsh at night during one of these high tides in July 2018 across 3 PIE creeks known to present different geomorphologic patterns in their low marsh zones. These data can be used for the assessment of the impact of low marsh geomorphology on consumer communities in PIE marshes. Mummichog captured in these Breder traps were further analyzed for gut content (LTE-TIDE-BrederTrap-GutContents). These data were included in part of the study “Habitat decoupling via saltmarsh creek geomorphology alters connection between spatially-coupled food webs” (Lesser et al. 2020) and were a portion of an MBL REU project.
DOI: 10.25345/c5n87331w
title: MassIVE MSV000089034 - Qtof_CS_metabolomics_example_Set
title: Qtof_CS_metabolomics_example_Set for metabolomics annotation
DOI: 10.5255/ukda-sn-855574
title: Impact of COVID-19 on Recent Graduate Career Decisions and Outcomes, 2020-2021

description: This research investigates the impact of the COVID-19 crisis on university graduates' career decision making and planning, their transition into the job market and early career outcomes. The study will further address whether there are inequities across the graduate population on the effects of this crisis in terms of drawing upon resources that may influence their career decision making, including social networks and ties, career planning and resilience. The project utilises a mixed-method research design based on a longitudinal survey and interviews over the course of a year. The outcomes of the project will inform practitioner guidance and policy-making around enhancing graduates' readiness in a challenging labour market, as well as raising policy implications for employer organizations in best-supporting graduates' transition into the economy.
DOI: 10.5519/qd.ggior0v9
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1081385 records)
DOI: 10.6084/m9.figshare.17695814
title: Generated Psilocybe and UNITE Strophariaceae sequences

description: File with all generated ITS sequences for this study as well as sequences from the UNITE fungal database subset for the family Strophariaceae
DOI: 10.6084/m9.figshare.17695814.v2
title: Generated Psilocybe and UNITE Strophariaceae sequences

description: File with all generated ITS sequences for this study as well as sequences from the UNITE fungal database subset for the family Strophariaceae
DOI: 10.5517/ccdc.csd.cc24951p
title: CCDC 1975011: Experimental Crystal Structure Determination

description: Related Article: Xiaomei Wang   Juan Diwu|2020|CSD Communication|||
DOI: 10.6084/m9.figshare.17695814.v1
title: Generated Psilocybe and UNITE Strophariaceae sequences

description: File with all generated ITS sequences for this study as well as sequences from the UNITE fungal database subset for the family Strophariaceae
DOI: 10.25345/c5hh6c874
title: MassIVE MSV000089035 - Proteomic and Phosphoproteomic Landscapes of Acute Myeloid Leukemia
title: Deep-scale proteome and phosphoproteome protocol benchmark.
DOI: 10.5519/mtjlgj2d
title: Unprecedented frequency of mitochondrial introns in colonial bilaterians

description: Animal mitogenomes are typically devoid of introns. Here, we report the largest number of mitochondrial introns ever recorded from bilaterian animals. Group II introns were identified in four species of bryozoans from three families (Order Cheilostomatida). A total of eight introns were found in the complete mitogenome of Exechonella vieirai, and five, 18 and 19 introns were found in the partial mitogenomes of Parantropora penelope, Discoporella sp. and Cupuladria cf. biporosa, respectively. Intron-encoded protein reverse transcriptase and intron maturase open-reading frames (RVT-IM ORFs) were identified in all species. Introns in E. vieirai and P. penelope had conserved group IIA intron ribozyme domains V and VI. Conserved domains were lacking from introns in Discoporella sp. and C. cf. bicornis, preventing their further categorization. Putative origins of metazoan introns were explored in a phylogenetic context, using an up-to-date alignment of mitochondrial RVT-IM ORFs. Results confirmed previous findings of multiple origins of annelid, placozoan and sponge RVT-IM ORFs and provided evidence for common intron donor sources across metazoan phyla. Our results corroborate growing evidence that some metazoans with regenerative abilities (i.e. placozoans, sponges, annelids and bryozoans) are susceptible to intron integration, most likely via horizontal gene transfer.
DOI: 10.18112/openneuro.ds001226.v4.0.0
title: BTC_preop
DOI: 10.6084/m9.figshare.16587311.v8
title: AREAdata updating output files

description: AREAdata output files for automatically updating climate averages. These are daily climate estimates based on the CDS ERA-5 reanalysis, see pearselab.github.io/areadata/.<br>File names begin with the climate variable given:temp = Temperaturespechumid = Specific Humidityrelhumid = Relative Humidityprecip = Precipiationuv = Ultraviolet<br>File names contain the administrative division level:<br>countries - highest administrative division<br>GID1 - lower administrative division, equivalent to states<br>GID2 - lower administrative division, equivalent to counties<br>Files downloadable as RDS files for direct use in the R statistical programming environment (appended .RDS), or as zip-compressed tab delimited files for other applications (appended .zip).<br>
DOI: 10.3886/e164581
title: Innovative Medicine and Research on COVID-19 (C19): Addressing Potential Ethical, Oversight, and Regulatory Barriers

description: Responses to two separate but related surveys containing open-ended questions to IRB professionals and researchers in the United States who studied COVID-19 during the spring and summer of 2020. These questions focused on ethical, logistical, and practical challenges to overseeing and performing COVID-related research early in the pandemic.
description: This study employed criterion-based convenience sampling to identify US-based researchers conducting COVID-19 research and IRB professional reviewing COVID-19 research. Both researchers and IRB professionals were contacted using publicly available contact information. Researcher contact information was located from ClinicalTrials.gov, Scopus, and Embase Conference Abstracts. Recruitment of IRB professionals was supported by Public Responsibility in Medicine and Research (PRIM&R), who agreed to distribute study recruitment materials in their electronic newsletter, as well as posting recruitment information on their IRB Forum blog page and their COVID-19 webpage.
description: COVID-19 Researchers, IRB professionals reviewing COVID-19 research. Smallest Geographic Unit: United States
description: web-based survey; Please review the provided ReadMe file for additional information about data collection and the contents of this dataset.
DOI: 10.6084/m9.figshare.19338056
title: Association of HLA-DRB1 with viral load and immune response to Epstein Barr virus in adult and pediatric Systemic Lupus Erythematosus patients.

description: <b>Title</b> – Table - Supplemental material for “Association of HLA-DRB1 with viral load and immune response to Epstein Barr virus in adult and pediatric Systemic Lupus Erythematosus patients”; Description – “Supplemental material, tables, for “Association of HLA-DRB1 with viral load and immune response to Epstein Barr virus in adult and pediatric Systemic Lupus Erythematosus patients” by Das P, Minz R W, Saikia B, Sharma A, Anand S, Singh H, Singh S in Lupus<br>Table 1 Caption: <sup>a</sup>See reference: 11,15–17, <sup>b</sup>SLE: total SLE patients, <sup>c</sup>HC:<sup> </sup>total healthy controls; Pos: Positive; Neg: Negative; EBV: Epstein-Barr Virus; VCA: viral capsid antigen; EBNA-1: EB nuclear antigen-1; p22: viral capsid antigen; EA-D: viral early antigen diffuse; n: number of samples, SLE: systemic lupus erythematosus; aSLE:adult SLE, pSLE: pediatric SLE, aHC: adult healthy controls, pHC: pediatric healthy controls; Acute infection is described as anti-VCA IgM/IgG positive but anti-EBNA-1 IgG negative; past infection is described as anti-VCA IgG and anti-EBNA-1 IgG positive but anti-VCA IgM negative and viral reactivation is described as positive for anti-EBNA-1 IgG and anti-EA-D IgG.<br>Table 2 caption: EBV: Epstein Barr Virus; VCA: viral capsid antigen; EBNA-1: EB nuclear antigen; p22: capsid antigen; EA-D: early antigen diffuse; HLA: human leukocyte antigen; aSLE: adult SLE; pSLE: pediatric SLE; n: sample size for calculation of genotype frequency; 2n: sample size for calculation of allele frequency, because each individual contributes two separate alleles
DOI: 10.6084/m9.figshare.19338056.v1
title: Association of HLA-DRB1 with viral load and immune response to Epstein Barr virus in adult and pediatric Systemic Lupus Erythematosus patients.

description: <b>Title</b> – Table - Supplemental material for “Association of HLA-DRB1 with viral load and immune response to Epstein Barr virus in adult and pediatric Systemic Lupus Erythematosus patients”; Description – “Supplemental material, tables, for “Association of HLA-DRB1 with viral load and immune response to Epstein Barr virus in adult and pediatric Systemic Lupus Erythematosus patients” by Das P, Minz R W, Saikia B, Sharma A, Anand S, Singh H, Singh S in Lupus<br>Table 1 Caption: <sup>a</sup>See reference: 11,15–17, <sup>b</sup>SLE: total SLE patients, <sup>c</sup>HC:<sup> </sup>total healthy controls; Pos: Positive; Neg: Negative; EBV: Epstein-Barr Virus; VCA: viral capsid antigen; EBNA-1: EB nuclear antigen-1; p22: viral capsid antigen; EA-D: viral early antigen diffuse; n: number of samples, SLE: systemic lupus erythematosus; aSLE:adult SLE, pSLE: pediatric SLE, aHC: adult healthy controls, pHC: pediatric healthy controls; Acute infection is described as anti-VCA IgM/IgG positive but anti-EBNA-1 IgG negative; past infection is described as anti-VCA IgG and anti-EBNA-1 IgG positive but anti-VCA IgM negative and viral reactivation is described as positive for anti-EBNA-1 IgG and anti-EA-D IgG.<br>Table 2 caption: EBV: Epstein Barr Virus; VCA: viral capsid antigen; EBNA-1: EB nuclear antigen; p22: capsid antigen; EA-D: early antigen diffuse; HLA: human leukocyte antigen; aSLE: adult SLE; pSLE: pediatric SLE; n: sample size for calculation of genotype frequency; 2n: sample size for calculation of allele frequency, because each individual contributes two separate alleles