cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/2swswwjn76.1
title: Using thermal imagery and changes to stem radius to assess water stress in two coniferous tree species 

description: With a warming climate and greater evaporative demand, many forest ecosystems are increasingly affected by water limitation as prolonged water deficits reduce tree-level growth and survival. Monitoring water deficit traditionally requires daily measurements of sap flow or radial flux from automated sensors mounted on individual trees. As an alternative approach, we evaluated the use of airborne thermal imagery from unmanned aerial vehicles as a rapid, scalable tool for assessing tree-level water stress. Plant water stress leads to higher leaf temperatures when soil moisture is low and evaporative demand is high. To detect this response, we modelled the difference between leaf and air temperature (∆T) as a function of local soil moisture vapour pressure deficit, and wind speed for two tree species, lodgepole pine (Pinus contorta var. latifolia) and white spruce (Picea glauca). We used those same weather and soil conditions to model dendrometer-based measurements of daily changes in internal tree water deficit (∆TWD). While canopy leaf temperature and daily change in tree water deficit showed little direct correlation with one another, both variables responded to soil moisture, vapour pressure deficit, and wind speed in a manner that reflects a common response to water stress as soil became progressively drier over the summer months. The two species showed similar responses to environmental conditions, with some differences related to species-specific strategies for drought avoidance. The application of thermal imagery to detect water stress in natural ecosystems can improve understanding how trees experience water stress across species and environmental conditions.
DOI: 10.17632/kjczmg942g.1
title: Influence of lanthanide (Gd, Tb or Ce) and silver doping on the luminescence lifetimes of calcium borate investigated by pulsed optically stimulated luminescence

description: Here it is presented raw and processed data of the photon arrival time distributions (PATDs) for estimation of lifetimes as reported in the paper "Influence of lanthanide (Gd, Tb or Ce) and silver doping on the luminescence lifetimes of calcium borate investigated by pulsed optically stimulated luminescence". 

Three spreadsheets contain raw and processed data for the following analyses: 1) Estimation of the luminescence lifetimes, including estimation of the relative contributions of the luminescence components (Spreadsheet1_Lifetimes); 2) Lifetimes and PATDs as a function of temperature (Spreadsheet2_Temperature) and 3) Lifetime estimation using narrow band-pass filters and reproducibility of the PATDs, both using the Gd-Ag(3)- doped compound (Spreadsheet3_Gd-Ag(3)).
DOI: 10.17632/pyrj8w9f4c.1
title: Monthly mean dataset of global phytoplankton taxonomic group concentrations Part.1 (2002.7-2012.12)

description: This dataset is a satellite product of global monthly mean phytoplankton taxonomic group (PTG) chlorophyll-a concentrations, including chlorophytes (Chlor), diatoms (Diat), haptophytes (Hapt), cryptophytes (Crypt), and cyanobacteria (Cyan). The time coverage of the dataset Part.1 is from July 2002 to December 2012. The data file includes PTG's chlorophyll-a concentration (unit: mg m-3), longitude, and latitude information, with a spatial resolution of 36 km. The values of non-water and invalid pixels are set to NaN. The data format is NetCDF (network common data form, nc). 

Naming rules: "data source identification_ month and year_PTG abbreviation_data production time.nc". Examples are as follows: 

MO_200207_chlor_data_20220520.nc 

where 'MO' refers to MODIS-Aqua data. '200207' represents July 2002. 'Chlor_data' means chlorophytes' chlorophyll-a concentration (unit: mg m-3). The data production time is expressed as "month, month, day day, year". '.nc' is the suffix of the NetCDF data file.
DOI: 10.17632/rmrnvfrpfr.1
title: Characterization of humic acid fractions from crop-livestock-forest systems using ultrahigh resolution mass spectrometry

description: Ultrahigh resolution mass spectrometry (FT-ICR-MS) data for humic acid fractions of different crop-livestock-forest systems. Full materials and methods, as well as interpretations, can be found in the corresponding manuscript (citation and DOI below). 

Manuscript currently in review. This will be updated once the manuscript is published.
DOI: 10.17632/rmrnvfrpfr.2
title: Characterization of humic acid fractions from crop-livestock-forest systems using ultrahigh resolution mass spectrometry

description: Ultrahigh resolution mass spectrometry (FT-ICR-MS) data for humic acid fractions of different crop-livestock-forest systems. Full materials and methods, as well as interpretations, can be found in the corresponding manuscripts (citation and DOI below). 

1) Goranov, A.I., Tadini, A.M., Martin-Neto, L., Bernardi, A.C.C., Oliveira, P.P.A., Pezzopane, J.R.M., Milori, D.M.B.P., Mounier, S. and Hatcher, P.G. (2022) Comparison of Sample Preparation Techniques for the (−)ESI-FT-ICR-MS Analysis of Humic and Fulvic Acids. Environmental Science & Technology. doi: 10.1021/acs.est.2c01125

2) Manuscript currently in preparation. This will be updated once the second manuscript is published.
DOI: 10.17632/gs238vhsx4.1
title: Charge neutralization of the active site glutamates does not limit substrate binding and transport by EmrE

description: EmrE, a small multidrug resistance (SMR) transporter from E. coli, confers broad-spectrum resistance to polyaromatic cations and quaternary ammonium compounds. Previous transport assays demonstrate that EmrE transports a +1 and a +2 substrate with the same stoichiometry of 2 protons:1 cationic substrate. This suggests that EmrE substrate binding capacity is limited to neutralization of the two essential glutamates, E14A and E14B (one from each subunit in the antiparallel homodimer), in the primary binding site. Here we explicitly test this hypothesis, since EmrE has repeatedly broken expectations for membrane protein structure and transport mechanism. We previously showed that EmrE can bind a +1 cationic substrate and proton simultaneously, with cationic substrate strongly associated with one E14 residue while the other remains accessible to bind and transport a proton. Here we demonstrate that EmrE can bind a +2 cation substrate and a proton simultaneously using NMR pH titrations of EmrE saturated with divalent substrates, for a net +1 charge in the transport pore. Further, we find that EmrE can alternate access and transport a +2 substrate and proton at the same time. Together, these results lead us to conclude that E14 charge neutralization does not limit the binding and transport capacity of EmrE.
DOI: 10.7284/121773
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SAV-15-04 using a RDI WM-300 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121776
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SAV-15-04 using a SeaBird SBE-25 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121778
title: Gyrocompass data collected during research cruise SAV-15-04 using a Yokogawa CMZ700B instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121775
title: Meteorological Station data collected during research cruise SAV-15-04 using a RMYoung 26800 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.7005013
title: Estimates of tidal-marsh bird densities using Bayesian networks

description: This data set was generated by Wiest, WA, MD Correll, BG Marcot, BJ Olsen, CS Elphick, TP Hodgman, GR Gunterspergen, and WG Shriver. 2019. Estimates of tidal marsh bird densities using Bayesian networks. Journal of Wildlife Management 83:109-120 (paper available here https://doi.org/10.1002/jwmg.21567) and was developed by the Saltmarsh Habitat and Avian Research Program (https://www.tidalmarshbirds.org/). The same data set has subsequently been used in other papers produced by our group.
description: The data are available for use, but please let us know if you are using them.
DOI: 10.5281/zenodo.7005012
title: Estimates of tidal-marsh bird densities using Bayesian networks

description: This data set was generated by Wiest, WA, MD Correll, BG Marcot, BJ Olsen, CS Elphick, TP Hodgman, GR Gunterspergen, and WG Shriver. 2019. Estimates of tidal marsh bird densities using Bayesian networks. Journal of Wildlife Management 83:109-120 (paper available here https://doi.org/10.1002/jwmg.21567) and was developed by the Saltmarsh Habitat and Avian Research Program (https://www.tidalmarshbirds.org/). The same data set has subsequently been used in other papers produced by our group.
description: The data are available for use, but please let us know if you are using them.
DOI: 10.7284/121774
title: Singlebeam Echosounder data collected during research cruise SAV-15-04 using a Furuno FCV-582 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121779
title: TSG (Thermosalinograph) data collected during research cruise SAV-15-04 using a SeaBird SBE-21 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17632/vchxr2g8jr.1
title: Multistage pump training data

description: multistage pump training data
DOI: 10.17632/bnthfntfrm.1
title: Data and code of: Value proposition of predictive discarding in semiconductor manufacturing

description: Data and code related to the work
van Kollenburg, G.H., Holenderski, M. and Meratnia, N. "Value proposition of predictive discarding in semiconductor manufacturing" (under review). 
Preprint available at: https://www.researchgate.net/publication/359005485_Value_proposition_of_predictive_discarding_in_semiconductor_manufacturing

The Secom dataset was originally published at https://archive.ics.uci.edu/ml/datasets/SECOM by authors: Michael McCann, Adrian Johnston. 
Those authors were not involved in the current study. 
The file attached here, uci-secom.csv has the outcome (pass/fail) appended to the process variables.
DOI: 10.17632/bnthfntfrm.2
title: Data and code of: Value proposition of predictive discarding in semiconductor manufacturing

description: Data and code related to the work
van Kollenburg, G.H., Holenderski, M. and Meratnia, N. 2022. Value proposition of predictive discarding in semiconductor manufacturing. Production Planning & Control. 
https://doi.org/10.1080/09537287.2022.2103471 

The Secom dataset was originally published at https://archive.ics.uci.edu/ml/datasets/SECOM by authors: Michael McCann, Adrian Johnston. 
Those authors were not involved in the current study. 
The file attached here, uci-secom.csv has the outcome (pass/fail) appended to the process variables.
DOI: 10.17632/hjnwzpspth.1
title: Are Predatory Mites Effective as Biological Control Agents to Suppress Oligonychus ilicis (Acari: Tetranychidae) in Blueberry Plantings?

description: Southern Red Mite, Oligonychus ilicis McGregor (Acari: Tetranychidae), is an important polyphagous spider mite pest that causes economic damage to many ornamentals and fruit crops. Blueberry growers in the Southeastern United States, including Florida and Georgia, have experienced severe losses due to outbreaks of O. ilicis, and a series of research has been conducted using a few acaricides to suppress O. ilicis population. Predatory mites are an important management tool used for controlling spider mites; however, predators have not been successfully evaluated in blueberry systems. Amblyseius swirskii, Phytoseiulus persimilis, and Neoseiulus californicus (Acari: Phytoseiidae) are among the most economically important arthropod agents used in augmentative biological control. To evaluate the potential of these three predatory mites for use in blueberry plantings, we conducted experiments under controlled conditions in the greenhouse and laboratory.  In preliminary laboratory experiments, P. persimilis and N. californicus reduced O. ilicis motile stages, indicating the potential of the two species to suppress the O. ilicis population. Under greenhouse conditions, N. californicus and P. persimilis reduced the oviposition rate after 7 days of release and the number of motile stages after 14 days of release. This is the first report of using Pytoseiidae mites to suppress O. ilicis in blueberry systems.
DOI: 10.17632/rpv326nkvg.1
title: HIV data from a South African national survey of female sex workers (2019)

description: 
Replication data for the analysis presented in:
Kassanjee et al. HIV incidence estimation among female sex workers in South Africa: a multiple methods analysis of cross-sectional survey data. Lancet HIV 2022.

A subset of data from the study described in: 
Milovanovic et al. Community-led cross-sectional study of social and employment circumstances, HIV and associated factors amongst female sex workers in South Africa: study protocol. Global Health Action 2021.

------------------------------------------------------------------------------------------------------------------

Data Dictionary

The provided data contains the following fields:

•	id: Numeric row and person identifier – 1, 2, …, 3005 (numeric identifier)
•	district: Numeric identifier for district – 1, 2, …, 12 (numeric identifier)
•	date_interview: Date of interview (date YYYY/MM/DD)
•	age_current: Age at time of interview in whole years (numeric)
•	hiv_status: HIV status as per study testing (categorical – Negative / Positive / Indeterminate)
•	hiv_sr_status: Self-reported HIV status (categorical – Self-report Negative / Self-report Positive / Unknown)
•	hiv_date_prevtest: Self-reported date of previous HIV test (date YYYY/MM/DD)
•	bm_vl: Viral load measurement in copies per ml as measured in the study; undetectable viral loads are recorded as ‘<’ and the lower limit of detection or ‘LDL’ (text)
•	bm_lagodn: Limiting Antigen Assay measurement as measured in the study – in normalised Optical Density (ODn) units (numeric)
•	client_violence: Indicator of self-reported client violence in the last year – 1 if present, 0 if absent (binary indicator)

Missing values are recorded as ‘NA’.

For queries, please contact the corresponding author – please see Kassanjee et al, Lancet HIV 2022.
DOI: 10.17632/gr2mrvy6wz.1
title: JC-Karolinska-data

description: We offer the raw data of our proteomics (MS) based on 40 human samples.
DOI: 10.17632/wryxvmf7wj.1
title: Samples used in the training and validation stages of the neural network models

description: The files were created using the software MATLAB.
DOI: 10.17632/wryxvmf7wj.2
title: Samples used in the training and validation stages of the neural network models

description: The files were created using the software MATLAB.  The samples contained in them were applied in this study: LUNARDI, A. R. ; LIMA JUNIOR, F. R. . Comparison of artificial neural networks learning methods to evaluate supply chain performance. GESTÃO & PRODUÇÃO (UFSCAR. IMPRESSO), v. 28, p. e5450, 2021.
DOI: 10.17632/wryxvmf7wj.3
title: Samples used in the training and validation stages of the neural network models

description: The files were created using the software MATLAB.  The samples contained in them were applied in this study: LUNARDI, A. R. ; LIMA JUNIOR, F. R. . Comparison of artificial neural networks learning methods to evaluate supply chain performance. GESTÃO & PRODUÇÃO (UFSCAR. IMPRESSO), v. 28, p. e5450, 2021.
DOI: 10.17632/9x3mwbr7y9.1
title: Supplementary data to the paper:Isolated hypothyroxinemia in pregnancy and adverse pregnancy and neonatal outcomes: a systematic review and meta-analysis

description: Supplementary data to the paper:Isolated hypothyroxinemia in pregnancy and adverse pregnancy and neonatal outcomes: a systematic review and meta-analysis
DOI: 10.17632/m89dwzbjyw.1
title: Evidence from Dissolved O2 Isotopes in North Atlantic Deep Water for a Recent Climatic Shift

description: This dataset contains:
Code and description files for a simple one-dimensional vertical model, which simulates the effects of photosynthesis, respiration, gas exchange, and vertical (eddy) diffusion on TOI values in deep-water formation areas (specifically in deep convection areas), during a year cycle. The model is a modified version of the Price-Weller-Pinkel (PWP) model, extended to include stable oxygen isotopes.
DOI: 10.17632/wr8j9cgjtd.1
title: Argentine ERQ data

description: Database belonging to psychometric studies of the Argentine version of the ERQ
DOI: 10.17632/kc4zw6gwz5.1
title: Video and load data of tension/compression tests of carbon fiber-reinforced polymer plate specimens intended for integrated digital image correlation

description: Video capture and load data of tensile and compression tests of carbon fiber-reinforced polymer holeplate specimens. This is the raw data intended for integrated digital image correlation (IDIC) analyses. The data set was used for developing a new type of IDIC where the rigid-body degrees of freedom of the sample, and desynchronization between video and load measurement, were eliminated by solving an optimization problem.
DOI: 10.17632/4fp4skyynr.1
title: Dataset of web accessibility evaluation of Moodle courses in mathematics, computer science and programming, 2021

description: English
The dataset contains the results of digital accessibility assessment of Russian-language Moodle courses in mathematics, computer science and programming. The study was carried out in 2021, the content of 22 online courses was analyzed. Expert assessment was performed using author's checklists based on WCAG 2.1 by the category: general accessibility; learning content accessibility (media, digital documents, tests, tasks); accessibility of mathematical content; accessibility of program code and programming tasks. The dataset is presented in two languages: English (Web_Accessibility_Of_Moodle_Courses_EN.xlsx) and Russian (Web_Accessibility_Of_Moodle_Courses_RU.xlsx).

Русский
Набор данных содержит результаты оценки цифровой доступности размещенных в Moodle русскоязычных онлайн-курсов по математике, компьютерным наукам и программированию. Исследование выполнялось в 2021 году, проанализирован контент 22 онлайн-курсов. Экспертная оценка выполнена с помощью авторских чек-листов, основанных на WCAG 2.1, по категориям: общая доступность; доступность учебного контента (медиа, цифровые документы, тесты, задания); доступность математической нотации; доступность программного кода и заданий на программирование. Набор данных представлен на английском (Web_Accessibility_Of_Moodle_Courses_EN.xlsx) и русском (Web_Accessibility_Of_Moodle_Courses_RU.xlsx) языках.
DOI: 10.17632/www78j3w73.1
title: Dataset of web accessibility evaluation of Russian-language MOOCs in computer science and programming, 2020

description: English
The dataset contains the results of automatic and expert digital accessibility assessment of Russian-language MOOCs in computer science and programming. The study was carried out in 2020, the content of 65 MOOCs was analyzed. Automatic web accessibility assessment was performed using the WAVE web accessibility evaluation tool (WebAIM, USA), expert assessment – using author's checklists based on WCAG 2.1. The dataset is presented in two languages: English (Web_Accessibility_Of_CS_MOOCs_EN.xlsx) and Russian (Web_Accessibility_Of_CS_MOOCs_RU.xlsx).

Русский
Набор данных содержит результаты автоматической и экспертной оценки цифровой доступности русскоязычных МООК по компьютерным наукам и программированию. Исследование выполнялось в 2020 году, проанализирован контент 65 МООК. Автоматическая оценка веб-доступности выполнена с помощью инструмента WAVE (WebAIM, США), экспертная оценка – с помощью авторских чек-листов, основанных на WCAG 2.1. Набор данных представлен на английском (Web_Accessibility_Of_CS_MOOCs_EN.xlsx) и русском (Web_Accessibility_Of_CS_MOOCs_RU.xlsx) языках.
DOI: 10.17632/www78j3w73.2
title: Dataset of web accessibility evaluation of Russian-language MOOCs in computer science and programming, 2020

description: English
The dataset contains the results of automatic and expert digital accessibility assessment of Russian-language MOOCs in computer science and programming. The study was carried out in 2020, the content of 65 MOOCs was analyzed. Automatic web accessibility assessment was performed using the WAVE web accessibility evaluation tool (WebAIM, USA), expert assessment – using author's checklists based on WCAG 2.1. The dataset is presented in two languages: English (Web_Accessibility_Of_CS_MOOCs_EN.xlsx) and Russian (Web_Accessibility_Of_CS_MOOCs_RU.xlsx).

Русский
Набор данных содержит результаты автоматической и экспертной оценки цифровой доступности русскоязычных МООК по компьютерным наукам и программированию. Исследование выполнялось в 2020 году, проанализирован контент 65 МООК. Автоматическая оценка веб-доступности выполнена с помощью инструмента WAVE (WebAIM, США), экспертная оценка – с помощью авторских чек-листов, основанных на WCAG 2.1. Набор данных представлен на английском (Web_Accessibility_Of_CS_MOOCs_EN.xlsx) и русском (Web_Accessibility_Of_CS_MOOCs_RU.xlsx) языках.
DOI: 10.17632/4fp4skyynr.2
title: Dataset of web accessibility evaluation of Moodle courses in mathematics, computer science and programming, 2021

description: English
The dataset contains the results of digital accessibility assessment of Russian-language Moodle courses in mathematics, computer science and programming. The study was carried out in 2021, the content of 22 online courses was analyzed. Expert assessment was performed using author's checklists based on WCAG 2.1 by the category: general accessibility; learning content accessibility (media, digital documents, tests, tasks); accessibility of mathematical content; accessibility of program code and programming tasks. The dataset is presented in two languages: English (Web_Accessibility_Of_Moodle_Courses_EN.xlsx) and Russian (Web_Accessibility_Of_Moodle_Courses_RU.xlsx).

Русский
Набор данных содержит результаты оценки цифровой доступности размещенных в Moodle русскоязычных онлайн-курсов по математике, компьютерным наукам и программированию. Исследование выполнялось в 2021 году, проанализирован контент 22 онлайн-курсов. Экспертная оценка выполнена с помощью авторских чек-листов, основанных на WCAG 2.1, по категориям: общая доступность; доступность учебного контента (медиа, цифровые документы, тесты, задания); доступность математической нотации; доступность программного кода и заданий на программирование. Набор данных представлен на английском (Web_Accessibility_Of_Moodle_Courses_EN.xlsx) и русском (Web_Accessibility_Of_Moodle_Courses_RU.xlsx) языках.
DOI: 10.17632/y4zf7j7vsr.1
title: Dataset of web accessibility evaluation of Russian-language mathematical MOOCs, 2019

description: English
The dataset contains the results of automatic and expert digital accessibility assessment of Russian-language mathematical MOOCs. The study was carried out in 2019, the content of 56 MOOCs was analyzed. Automatic web accessibility assessment was performed using the WAVE web accessibility evaluation tool (WebAIM, USA), expert assessment – using author's checklists based on WCAG 2.1. The dataset is presented in two languages: English (Web_Accessibility_Of_Math_MOOCs_EN.xlsx) and Russian (Web_Accessibility_Of_Math_MOOCs_RU.xlsx).

Русский
Набор данных содержит результаты автоматической и экспертной оценки цифровой доступности русскоязычных математических МООК. Исследование выполнялось в 2019 году, проанализирован контент 56 МООК. Автоматическая оценка веб-доступности выполнена с помощью инструмента WAVE (WebAIM, США), экспертная оценка – с помощью авторских чек-листов, основанных на WCAG 2.1. Набор данных представлен на английском (Web_Accessibility_Of_Math_MOOCs_EN.xlsx) и русском (Web_Accessibility_Of_Math_MOOCs_RU.xlsx) языках.