cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28082282.v1
title: The role of transcutaneous electrical nerve stimulation (TENS) in rehabilitation of cerebral palsy: a systematic review

description: Cerebral palsy (CP) is one of the most important causes of disability across the globe. Transcutaneous electrical nerve stimulation (TENS) has been proposed as a potential adjunct therapy. This systematic review aims to explore the application of TENS in the rehabilitation of individuals with CP. <b>Methods:</b> A comprehensive literature search was conducted across multiple databases for studies published up to December 2023. Inclusion criteria encompassed clinical studies that evaluated the effects of TENS on rehabilitation outcomes in individuals with CP. Data were extracted and synthesized in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. The quality of the included studies was assessed using the appropriate Joanna Briggs Institute (JBI) checklist based on the study design. A total of 11 studies were eligible for entering this systematic review. Studies reported the application of TENS for different CP-induced conditions, including motor function, spasticity, and gait. Following the administration of TENS in CP patients, an overall favorable trend with few to no side effects was reported. Nevertheless, most of the included studies were of low to moderate quality. Although this review offers a comprehensive examination of the use of TENS in CP rehabilitation, the scarcity of high-quality studies indicates that further research is necessary to confirm its efficacy in this population.
DOI: 10.6084/m9.figshare.7544930.v1
title: M. polymorpha Fungi OTU Table: LSU

description: OTU table of fungal amplicons obtained from Marchantia polymorpha using Illumina MiSeq sequencing of part of ribosomal large subunit.
DOI: 10.17632/85fn49psnx
title: Supplementary files for the article "Atypical fibroxanthoma and pleomorphic dermal sarcoma: Local recurrence and metastasis in a nationwide population-based cohort of 1118 patients"

description: Supplementary files for the article "Atypical fibroxanthoma and pleomorphic dermal sarcoma: Local recurrence and metastasis in a nationwide population-based cohort of 1118 patients"

Authors: Mathias Ørholt, MD1; Kiya Abebe, BMSc1; Louise E. Rasmussen, BMSc1; Frederik L. Aaberg, BMSc1; Lærke J. Lindskov, BMSc1; Grethe Schmidt, MD1; Anne Lene Wagenblast, MD1; Michael M. Petersen, MD, DMSc2; Anand C. Loya, MD3; Søren Daugaard, MD3; Mikkel Herly, MD, Ph.d.1,4; David Hebbelstrup Jensen, MD, Ph.d.1; Peter Vester-Glowinski, MD, Ph.d.1
DOI: 10.17632/h39gz8bknn
title: LTA-zeolite unit cell configurations

description: Cif files containing information about LTA-zeolite optimized unit cell for the following cases: the pure siliceous framework (LTA-Si), NaA satisfying Löwenstein's rule (LTA-L), NaA no satisfying Löwenstein's rule (LTA-NL), NaA with one Fe atom (LTA-1Fe), and two Fe atoms by unit cell (LTA-2Fe). For more detailed information please refer to the associated publication at the following link https://doi.org/10.1016/j.commatsci.2021.110557.
DOI: 10.17632/mdmjvmdz3n
title: Replication data

description: These are datasets produced by geographically combining Living-Standards Measurement Study - Integrated Studies on Agriculture (LSMS-ISA) data spanning 3 waves, from 2009 to 2012, and refugee data provided by the UNHCR at the settlement level. 
The Stata code for running the analyses is also provided.
DOI: 10.6084/m9.figshare.24299311.v1
title: WaTEM/SEDEM_dynamic_EU

description: Uploaded is the accompaying data and coe to run the temporally dynamic version of WaTEM/SEDEM for EU catchments.
DOI: 10.6084/m9.figshare.25887259.v2
title: Tillandsia duratii genome and annotation

description: Our research (Tracing the evolutionary and genetic footprints of air plants transition from land to air) assembled the genome of the Tillandsia duratii and annotation information (file: GENOME GFF CDS PEP )
DOI: 10.6084/m9.figshare.27175086.v1
title: Hypothesis_2

description: Results of Logistic regression, SVM, and Decision tree in three hypotheses for attention classification.
DOI: 10.6084/m9.figshare.28795829.v2
title: Dataset "Unpacking the connection between funding configurations and research teams’ interdisciplinary practices" published in QSS

description: Panel data on team science, funding and interdisciplinarity (2009-2019). Renewable Energy and Food Science.
DOI: 10.17632/cv4h8d8w2k
title: Individual territoriality in lekking species: the case of the Helmeted Manakin

description: Our objectives were to verify whether territorial behaviour occurs in the Helmeted Manakin and to provide a preliminary assessment of this species’ hypothesised social monogamy. Using an experimental approach with simulated territorial intrusions, we demonstrated that males in this species hold individual territories with nesting sites but do not provide parental care, similar to its congener, the Araripe Manakin (Antilophia bokermanni). Males’ responses occurred more aggressively in central areas of territories. Larger home ranges encompassed the smaller defended territories and the male display consists of repeated circular flights within the territory. Our results indicate that the Helmeted Manakin has a polygamous mating system. However, we suggest the species is better classified within the continuum of a resource-defence exploded-lek mating system. The distinct environmental conditions in which the species evolved may have played a significant role in modifying its behaviour, resulting in patterns that deviate from the typical lekking system found among manakins. This study highlights the importance of investigating atypical manakins to further our understanding of alternative reproductive tactics among birds.
DOI: 10.17632/v8bt9h9knd
title: Thin and in situ melanomas of unfavorable prognosis: a retrospective observational analysis of local recurrence, metastasis, and death in early-stage disease - Supplementary Tables

description: Supplementary table 1. Distribution of patients according to their respective countries. Variables distribution in patients with MIS, TM and in the total group and their frequencies by country. USA- United States of America. BRA – Brasil. TM – Thin Melanoma
Supplementary table 2. Metastatic melanoma patients features ordered by Breslow thickness. BCC- Basal cell carcinoma. CNS – Central nervous system. CT – Chemotherapy. F- Female. IMT - Immunotherapy. INF - Interferon. LR – Local recurrence – Lymph node. LNB – Lymph node biopsy. M - Male. MIS -Melanoma in situ. RT- Radiotherapy. SCC – Squamous cell carcinoma. *LNB performed at time of local recurrence.
DOI: 10.6084/m9.figshare.1396453.v6
title: Miocene Amazonian Palynological Diversity - Image files

description: <strong>Early-Miocene Amazonian palynological diversity database - Part 2/2 - MSc Thesis UvA</strong> The database consists of two parts: images and an excel sheet that records the sporomorph diversity (see related link for the excel file). Each entry in the excel file also records a short description of the sporomorph, possible synonyms, the slide code and the coordinates. The database was initially set up as an aid to keep track of the high sporomorph divesity during counting. Due to this the database also collects undescribed sporomorphs, recorded with a "type" name. The database is meant to be open and freely shared. For questions, suggestions or general inquiries mail to milanvanmanen [at] gmail.com*This database was part of a MSc thesis for the University fo Amsterdam*
DOI: 10.6084/m9.figshare.1512402.v2
title: Appendix to A Phonological Reconstruction of Proto-Hlai

description: Appendix to A Phonological Reconstruction of Proto-Hlai
DOI: 10.6084/m9.figshare.19690495.v1
title: SVM models

description: FOR PUBLICATION
DOI: 10.6084/m9.figshare.21695528.v1
title: Mykrobe panel typhi version 20221208

description: This is typhi panel data version 20221208, to be used by the command line tool mykrobe.
DOI: 10.6084/m9.figshare.28191398.v1
title: Enhanced diagnosis of multi-drug-resistant microbes using group association modeling and machine learning

description: This repository contains the supplemental data files from the analysis of Group Association Modeling (GAM) applied to M. tuberculosis (Mtb) and S. aureus. The data provides insights into significant variants, genes, and SNPs, along with results from Linear Mixed Model (LMM) analyses.
 
 
 
Contents: 
 Significant variants identified for all GAM Mtb groups (SF2). 
 
Results of LMM analysis for Mtb (SF3).

Significant SNPs identified for all GAM S. aureus groups (SF4).

Significant genes identified for all GAM S. aureus groups (SF5).

GAM significant variants for S. aureus (SF6).

Results of LMM analysis for S. aureus SNPs (SF7).

Results of LMM analysis for S. aureus genes (SF8).

Group-specific significance thresholds used in the GAM analysis (SF9). 

Large files (Data.zip) for code on Zenodo (https://doi.org/10.5281/zenodo.14975407)
DOI: 10.6084/m9.figshare.9825071.v4
title: Association statistics and effects of 203 genome-wide significant SNPs

description: For each SNP, the mat file contains the RSID, chromosome and hg19 position, canonical correlation values, CCA coefficients, meta-analysis p-values, degrees of freedom, the p-value from the CCA step, and the p-value from the regression of slopes. Values from the US-driven meta-analysis are in the first column and values from the UK-driven meta-analysis are in the second column. <br><br>For each SNP, the pdf file contains: (A) -log<sub>10</sub>(p-value) of the meta-analysis p-values per facial segment in META<sub>US</sub> and META<sub>UK</sub>. Black-encircled facial segments have reached a genome-wide p-value (p &lt;= 5 x 10<sup>-8</sup>). (B) The normal displacement (displacement in the direction locally normal to the facial surface) in each quasi-landmark of the facial segment reaching the lowest p-value in META<sub>US</sub> and META<sub>UK </sub>going from the minor to the major allele SNP variant. Blue: inward depression; Red: outward protrusion. (C) LocusZoom plots in META<sub>UK</sub> (top) and META<sub>US</sub> (bottom). Points are color-coded based on linkage disequilibrium (r<sup>2</sup>) in the 1000G Phase 3 EUR super-population. Asterisks represent genotyped SNPs, circles represent imputed SNPs.
DOI: 10.17632/47knsx22d4
title: Data for: Label design of wines promoted online: effects of perceived authenticity on purchase intentions

description: Material used for stats
DOI: 10.6084/m9.figshare.22081364.v2
title: Table4. Profile of mood states (POMS)

description: Table 4 presents the results of the mood scale recorded for the R and NR groups. In the post-measurement, the NR group displayed significantly higher scores in the “depression-depression” category (p&lt;0.05). There were no significant differences between the R and NR groups or between pre- and post-measurements in the categories of “anger-hostility,” “confusion-perplexity,” “fatigue-lethargy,” “tension-anxiety,” “vitality-energy,” “friendliness,” and “TMD score.”
DOI: 10.6084/m9.figshare.23694912.v1
title: pancreas.h5ad

description: Dataset for scpoli tutorial.
DOI: 10.6084/m9.figshare.24440509.v1
title: BraTS2023-GLI-Challenge-Raw Data_vol.1

description: Ample multi-institutional routine clinically-acquired multi-parametric MRI (mpMRI) scans of glioma.BraTS2023 challenge raw data_vol.1
DOI: 10.17632/m2rpv2bmpb
title: Video Blogging and Learning Engagement

description: This data set involves the instruments used in the research of video blogging and learning engagement in an online speaking course during the COVID-19 pandemic.
DOI: 10.25375/uct.12931262.v1
title: Effectiveness of blended learning versus lectures alone on ECG analysis and interpretation by medical students

description: The aim of our study was therefore to compare the effectiveness of blended learning (combination of face-to-face lectures and e-learning) to conventional ECG teaching (face-to-face lectures only), on the acquisition and retention of ECG competence of medical students
DOI: 10.17632/7rg8c34cpx
title: Cell Reports; Nychyk et al 2021; Figure S7; Protein quality and quantity influence the effect of dietary fat on weight gain and tissue partitioning via host-microbiota changes

description: This experiment was done to analyze the impact of dietary macronutrients and the associated microbiome on energy intake. We used 2 different diets and one mouse strain (C57BL/6). This file contains the cage average data of male C57BL/6 mice exposed to 12 weeks feeding on one of 2 different diets. Energy intake recorded on weekly basis per cage; final energy intake calculated at the end of each treatment period. 9 to 10 animals were exposed to each diet with 2 animals per cage. Dietary treatments consisted of one level of dietary fat (55% by energy) combined with one level of protein (30% by energy) with either casein (CAS) or whey protein isolate (WPI). Full details of the dietary compositions can be found in the paper supplementary table 1. First, animals were fed for 4 weeks with either 30% CAS or WPI in a 55% fat diet and switched to a 4-week antibiotic (ABX) treatment (i.e., CAS-ABX, WPI-ABX) or they continued to receive the same diet (CAS-control, WPI-control). For the final 4 weeks of the experiment, the two control groups acted as faecal donors for the two groups which had received antibiotics. Complete meta-data are in the meta-data tab of the file. Means for each diet derived from these cage averages are presented in Figure S7A and B.
DOI: 10.6084/m9.figshare.22550056.v1
title: SMI datasets

description: SMI datasets contains 5 sub-dataset. The number cells for the 5 samples are 18,895 (sample global_z0), 16,711(sample global_z1), 15,509(sample global_z2), 16,529 (sample global_z3), 15,977(sample global_z4). The number of unique genes is 980.
DOI: 10.6084/m9.figshare.23713842.v1
title: Materials Project Trjectory (MPtrj) Dataset

description:  
This data file is the MPtrj dataset. 
The json file contains 1,580,395 structures, 1,580,395 energies, 7,944,833 magnetic moments, 49,295,660 forces, and 14,223,555 stresses that were used to train the pretrained CHGNet
The structures and labels are parsed from all the GGA/GGA+U static/relaxation trajectories from 2022.9 version Materials Project, with selection method that avoids imcompatible calculations and duplicated structures.
The format of the json file looks like this:
MPtrj
       -'mp-id-0'
              -'frame-id-0'
                     -'structure': dictionary of pymatgen.core.Structure
                     -'uncorrected_total_energy': [eV] raw energy from VASP output
                     -'corrected_total_energy': [eV] VASP total energy after MP2020 compatibility
                     -'energy_per_atom': [eV/atom] corrected energy per atom, this is the energy label used to train CHGNet
                     -'ef_per_atom': [eV/atom] formation energy per atom
                     -'e_per_atom_relaxed': [eV/atom] corrected energy per atom of the relaxed structure, this is the energy you can find for the mp-id on materials project website
                     -'ef_per_atom_relaxed': [eV/atom] formation energy per atom of the relaxed structure
                     -'force': [eV/A] force on the atoms 
                     -'stress': [kBar] stress on the cell 
                     -'magmom': [muB] magmom on the atoms 
                     -'bandgap': [eV] bandgap 
              -'frame-id-1'
                     ...
       -'mp-id-1'
       ...
Notes:
1. The frame id has syntax: 'task_id-calc_id-ionic_step', where 'calc_id' is 0 (second) or 1 (first) in the double relaxation process for each material project relaxation task. 
2. Since MPtrj is a diverse dataset that contains both GGA and GGA+U calculation, which has different energy values, MP2020 compatibility is applied to the VASP raw energies to make GGA and GGA+U universally compatible. The 'energy_per_atom' (which is after MP2020 correction) is used for pretrained CHGNet training.
see: https://pymatgen.org/pymatgen.entries.html#pymatgen.entries.compatibility.Compatibility
3. CHGNet is trained on absolute value of DFT magmom, the unit conversion is automatic if you use the dataset we provide, see: https://github.com/CederGroupHub/chgnet/blob/main/chgnet/data/dataset.py
4. CHGNet output stress is in unit of GPa, which is -0.1 *  VASP raw stress in MPtrj dataset. The unit conversion is also implemented in CHGNet dataset, so you don't have to convert the VASP stress unit when passing them to the dataset object.
Reference:
If you use CHGNet or MPtrj dataset, please cite:
@article{deng_2023_chgnet,
title={{CHGNet: Pretrained universal neural network potential for charge-informed atomistic modeling}},
author={Deng, Bowen and Zhong, Peichen and Jun, KyuJung and Riebesell, Janosh and Han, Kevin and Bartel, Christopher J and Ceder, Gerbrand},
journal={arXiv preprint arXiv:2302.14231},
year={2023},
url = {https://arxiv.org/abs/2302.14231}
}
DOI: 10.6084/m9.figshare.7294841.v3
title: protTrace Datasets - Cellular component analysis, Syn3.0 traceability, Yeast genes classification based on traceability in E.Coli

description: protTrace datasets for the following analysis:<br>(1) Evolutionary traceability of Syn3.0 genes (Artificial Life Project)(2) Cellular component analysis of yeast genes based on traceability(3) Classification of yeast genes into 3 traceability bins (&lt;0.25, 0.25 to 0.75, &gt;0.75) w.r.t. traceability in E.Coli
DOI: 10.6084/m9.figshare.7364099.v1
title: Supplementary Material for: Sex-Specific Associations of Androgen Receptor CAG Trinucleotide Repeat Length and of Raloxifene Treatment with Testosterone Levels and Perceived Stress in Schizophrenia

description: Lower testosterone levels are associated with greater negative symptoms in men with schizophrenia. Testosterone signals via androgen receptor (AR). A functional variant in the AR gene (CAG trinucleotide repeat polymorphism) is associated with circulating testosterone and mood-related symptoms in healthy people. Raloxifene increases testosterone in healthy males and reduces symptom severity and improves cognition in schizophrenia; however, whether raloxifene increases testosterone in men with schizophrenia is unknown. We assessed the interaction of a functional AR gene variant and adjunctive raloxifene on peripheral testosterone and symptom severity in schizophrenia. Patients with schizophrenia (59 males and 38 females) participated in a randomized, double-blind, placebo-controlled, crossover trial of adjunctive raloxifene (120 mg/day). Healthy adults (46 males and 41 females) were used for baseline comparison. Baseline circulating testosterone was decreased in male patients compared to male controls and positively correlated with CAG repeat length in male controls and female patients. Male patients with short, compared to long, CAG repeat length had higher stress scores. Raloxifene treatment increased testosterone in male patients, but was unrelated to AR CAG repeat length, suggesting that raloxifene’s effects may not depend on AR activity. Sex-specific alterations of the relationship between AR CAG repeat length and testosterone suggest that altered AR activity may impact perceived stress in men with schizophrenia.
DOI: 10.17632/k85f6rj28f
title: Datasets for investigating the relationship between leptospirosis and moyamoya disease in Hubei, China

description: The datasets of manuscript "An ecological comparison study on the causal association between leptospirosis and moyamoya disease (MMD) in Hubei, China, 2017-2019" which was submitted to the journal Clinical Neurology and Neurosurgery. 
Figure 1. Map of the study area. A. The administrative division of Hubei province at both county and city level. B. The geographic feature of the province. DEM (digital elevation model), which represents the diverse landforms: hills in the east, mountains in the west, and plain in the south-central.
Figure 2. The annual surveillance data of leptospirosis in Hubei province (1960-2020). The data was collected from the Hubei province health statistics yearbook written by Hubei CDC.
Figure 3. Average annual incidence of MMD by sex and age from 2017 to 2019. “Total” represents sex adjusted incidence in different age groups.
Figure 4. Age-adjusted incidence rate (AAIR) and hot-spot analysis mapped by county in 2017 (A and B), 2018 (C and D), and 2019 (E and F). The AAIR at the county-level was divided into 5 groups and displayed in different colors, deeper color represents higher MMD incidence. The result of hot spot analysis includes 7 groups from -3 to 3. The value of -3, -2, and -1 represents 99%, 95%, and 90% confidence of cold spot, respectively; The value of 3, 2, and 1 represents 99%, 95%, and 90% confidence of hot spot, respectively; The value of 0 represents not cluster.
Table 1. The basic characteristics of MMD in Hubei province from 2017 to 2019.
Table 2. Comparison of the AAIR and the variables between hot and cold spots.
DOI: 10.6084/m9.figshare.28761560.v1
title: Simulation data of FBS-induced<i> </i>aggregation of <i>Capsaspora</i> <i>owczarzaki</i> associated with a preprint ____, "A novel model to address the relevance of aggregation in animal origins" by G. Bercedo, D. Stepanova, I. Ruiz-Trillo, T. Alarcón and K. Kin.

description: Simulation data of chemically induced aggregation of Capsaspora owczarzaki associated with the preprint ____:Title: A novel model to address the relevance of aggregation in animal originsAuthors: Gonzalo Bercedo, Daria Stepanova, Iñaki Ruiz-Trillo, Tomás Alarcón and Koryu Kin<br>The code of the numerical simulations used to generate present simulation data can be found on a GitHub repository: https://github.com/daria-stepanova/Capsaspora.git. The repository also contains the necessary scripts that can be used to visualise the simulation data and reproduce the simulation videos included in the manuscript.
DOI: 10.17632/hvzjxz5c35
title: Data for: Combining Brine or CO2 Geothermal Preheating with Low-temperature Waste Heat: A Higher-efficiency Hybrid Geothermal Power System

description: This is the source data for figures, tables, and analysis in this paper.
DOI: 10.17866/rd.salford.7953032.v1
title: Art Pop Intersections - Impact and Reach

description: A selection of national and international interviews, reviews, previews, audience data and promotional materials associated with the outputs.<br>The materials are represented as both images and a substantial number of hyperlinks stored in 'references'. <br>Tracks from the albums in the collection have received significant radio play both nationally and internationally. The Dutch Uncles BBC artist page details their broadcasted live sessions, interviews and 'playlisting'. Singles from the albums been BBC 6music 'A' listed, receiving heavy rotation and reaching 2.5million listeners per week (a link is embedded to corroborate this figure).<br><br>
DOI: 10.6084/m9.figshare.1031637.v1
title: Jean-Claude Bradley Open Melting Point Datset

description: Jean-Claude Bradley's Legacy Dataset of Open Melting Points. 28,645 measurements including those found to be incorrect (marked as 'do not use'). csid corresponds to Chemspider ID.
DOI: 10.6084/m9.figshare.16856137.v2
title: Som2_2019-07-24_12-01-49

description: Electrophysiology recording