cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6654961
title: Deep cross-omics cycle attention model for joint analysis of single-cell multi-omics data

description: We proposed DCCA for accurately dissecting the cellular heterogeneity on joint-profiling multi-omics data from the same individual cell by transferring representation between each other.
DOI: 10.5281/zenodo.4762064
title: Deep cross-omics cycle attention model for joint analysis of single-cell multi-omics data

description: We proposed DCCA for accurately dissecting the cellular heterogeneity on joint-profiling multi-omics data from the same individual cell by transferring representation between each other.
DOI: 10.5281/zenodo.6654960
title: Data of Water Vapor Flux-Profile Relationship in the Stable Boundary Layer over the Sea Surface

description: data and code for paper 'Water Vapor Flux-Profile Relationship in the Stable Boundary Layer over the Sea Surface'
DOI: 10.5281/zenodo.6637699
title: Data of Water Vapor Flux-Profile Relationship in the Stable Boundary Layer over the Sea Surface

description: data and code for paper 'Water Vapor Flux-Profile Relationship in the Stable Boundary Layer over the Sea Surface'
DOI: 10.5281/zenodo.6594170
title: Data and code for "Realization of a minimal Kitaev chain in coupled quantum dots"

description: This folder contains the raw data and code used to generate the plots for the paper <em>Realization of a minimal Kitaev chain in coupled quantum dots</em> (arXiv: 2206.08045). To run the Jupyter notebook, install Anaconda and execute: <pre><code class="language-bash">conda env create -f env.yml</code></pre> followed by: <pre><code class="language-bash">conda activate pmm-paper</code></pre> Finally, <pre><code class="language-bash">jupyter notebook</code></pre> to launch the notebook. Raw data are stored in netCDF (.nc) format. The files are exported by the data acquisition package QCoDeS and can be read as an xarray Dataset.
DOI: 10.26188/20086916.v1
title: Fangorn rrn Database

description: A quality-checked and publicly available database of full-length 16S-ITS-23S rRNA operon sequences
DOI: 10.5517/ccdc.csd.cc29154p
title: CCDC 2116281: Experimental Crystal Structure Determination

description: Related Article: Matthew Hammond, David A. Vaccaro, Gerard Parkin|2022|Polyhedron|222|115642|doi:10.1016/j.poly.2021.115642
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bkql7
title: CCDC 2161989: Experimental Crystal Structure Determination

description: Related Article: Mohammad El-khateeb, Hayato Moriyama, Yukhiro Yoshida, Hiroshi Kitagawa|2022|Polyhedron|223|115949|doi:10.1016/j.poly.2022.115949
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bkqk6
title: CCDC 2161988: Experimental Crystal Structure Determination

description: Related Article: Mohammad El-khateeb, Hayato Moriyama, Yukhiro Yoshida, Hiroshi Kitagawa|2022|Polyhedron|223|115949|doi:10.1016/j.poly.2022.115949
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.19016075
title: Epidemiological cut-off value and antibiotic susceptibility test methods for azithromycin in a collection of multi-country invasive non-typhoidal Salmonella

description: Data from study to: 1. determine the azithromycin MIC epidemiological cut-off (ECOFF) and corresponding zone diameter of invasive non-typhoidal Salmonella 2. confirmation of the ECOFF by detection of molecular resistance mechanisms (ECOFF) 3. comparison of azithromycin susceptibility testing methods and brands for iNTS
DOI: 10.26182/n6b5-zx38
title: Legume representative protein set
DOI: 10.34740/kaggle/dsv/3817290
title: Russian Invasion of Ukraine
DOI: 10.34808/1arv-2j92
title: Benign neoplasm of ovary - Female, 71 - Tissue image [6170730026737521]

description: This is the histopathological image of OVARY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 71Clinical description: Suspicious right ovarian tumourGender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter II - NeoplasmsDiagnosis: Benign neoplasm of ovaryResult of the histopathological examination: Serous cystadenoma of the right ovary.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: OVARYTissue: OvaryType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/beee-dz66
title: Benign neoplasm of breast - Female, 57 - Tissue image [6170730026736421]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 57Clinical description: Mammotomy biopsy. Suspicion of papillomas.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter II - NeoplasmsDiagnosis: Benign neoplasm of breastResult of the histopathological examination: Intra-ductal breast papillomas.Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Breast, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/phr0-yt08
title: Chronic pharyngitis - Female, 85 - Tissue image [6170730026738581]

description: This is the histopathological image of OTHER AND ILL-DEFINED SITES IN LIP, ORAL CAVITY AND PHARYNX tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 85Clinical description: Neck tumor of the left side, observed for 2 months. In FNA: Undifferentiated malignant tumor cells, IHC: p63 (-), TTF1 (-), synaptophysin (-).Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter X - Diseases of the respiratory systemDiagnosis: Chronic pharyngitisResult of the histopathological examination: The sections are covered with flat epithelium, hypertrophic areas and in sections of the pharyngeal recess with stratified epithelium, with a focal chronic inflammatory infiltrate. No cancer was found.Sample:Material: FFPECollecting method: Surgical specimenTopography: LIP, ORAL CAVITY AND PHARYNXOrgan: OTHER AND ILL-DEFINED SITES IN LIP, ORAL CAVITY AND PHARYNXTissue: Pharynx, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/2ty4-3229
title: Trichofolliculoma - Male, 31 - Tissue image [617073002674941]

description: This is the histopathological image of CONNECTIVE, SUBCUTANEOUS AND OTHER SOFT TISSUES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 31Clinical description: Tumor of subcutaneous tissue of upper limb.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: BASAL CELL NEOPLASMSDiagnosis: TrichofolliculomaResult of the histopathological examination: Trichofolliculoma.Sample:Material: FFPECollecting method: Excision of lesionsTopography: CONNECTIVE, SUBCUTANEOUS AND OTHER SOFT TISSUESOrgan: CONNECTIVE, SUBCUTANEOUS AND OTHER SOFT TISSUESTissue: Connective, subcutaneous and other soft tissues of upper limb and shoulderType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/xame-7h24
title: Endometriosis of ovary - Female, 39 - Tissue image [6170730026746151]

description: This is the histopathological image of OVARY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 39Clinical description: Cyst of left ovary and tumor of peritoneum.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XIV - Diseases of the genitourinary systemDiagnosis: Endometriosis of ovaryResult of the histopathological examination: Endometriosis of ovary.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: OVARYTissue: OvaryType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/yfxf-zt67
title: Benign neoplasm of breast - Female, 57 - Tissue image [6170730026731531]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 57Clinical description: Mammotomy biopsy. Suspicion of papillomas.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter II - NeoplasmsDiagnosis: Benign neoplasm of breastResult of the histopathological examination: Intra-ductal breast papillomas.Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Breast, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/hm8p-wn68
title: Kaposi sarcoma - Male, 36 - Tissue image [6170730026734531]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 36Clinical description: No clinical data.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: BLOOD VESSEL TUMORSDiagnosis: Kaposi sarcomaResult of the histopathological examination: Kaposi sarcoma: Proliferation of slit-like or dilated vascular channels formed by spindled endothelial cells. Vascular channels infiltrate dermis. Extravasated erythrocytes and hemosiderin are present. CD34+, CD31+, Czynnik VIII+, HHV8+, Ki-67 20%.Sample:Material: FFPECollecting method: Excision of lesionsTopography: SKINOrgan: SKINTissue: Skin, NOSType of staining: positive/IHCStaining: Not applicableAntibody: HHV8Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/1bek-c797
title: OTHER AN UNSPECIFIED FEMALE GENITAL ORGANS, Parametrium - Female, 66 - Tissue image [6170730026734941]

description: This is the histopathological image of OTHER AN UNSPECIFIED FEMALE GENITAL ORGANS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 66Clinical description: Status after resection of borderline ovarian tumour of the left side.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: parameetria with normal structure. Sclerosing changes in arteries.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: OTHER AN UNSPECIFIED FEMALE GENITAL ORGANSTissue: ParametriumType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/1zp6-xa52
title: Tubular carcinoma - Female, 52 - Tissue image [617073002674861]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 52Clinical description: Palpable tumor of left breast, diameter 2 cm.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Tubular carcinomaResult of the histopathological examination: Tubular breast carcinoma NHG 1 (1+2+1: 1 mitosis/10 HPF).Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Lower-outer quadrant of breastType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/qcp1-mv15
title: Endometriosis of pelvic peritoneum - Female, 39 - Tissue image [6170730026747341]

description: This is the histopathological image of RETROPERITONEUM AND PERITONEUM tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 39Clinical description: Cyst of left ovary and tumor of peritoneum.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XIV - Diseases of the genitourinary systemDiagnosis: Endometriosis of pelvic peritoneumResult of the histopathological examination: Endometriosis of peritoneum.Sample:Material: FFPECollecting method: Surgical specimenTopography: RETROPERITONEUM AND PERITONEUMOrgan: RETROPERITONEUM AND PERITONEUMTissue: Pelvic peritoneumType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/b8cp-se94
title: Benign neoplasm of ovary - Female, 71 - Tissue image [6170730026735181]

description: This is the histopathological image of OVARY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 71Clinical description: Suspicious right ovarian tumourGender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter II - NeoplasmsDiagnosis: Benign neoplasm of ovaryResult of the histopathological examination: Serous cystadenoma of the right ovary.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: OVARYTissue: OvaryType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/x7qt-3q20
title: RETROPERITONEUM AND PERITONEUM, Peritoneum NOS - Female, 66 - Tissue image [6170730026736911]

description: This is the histopathological image of RETROPERITONEUM AND PERITONEUM tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 66Clinical description: Status after resection of borderline ovarian tumour of the left side.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: Minor peritoneal fibrosis.Sample:Material: FFPECollecting method: Surgical specimenTopography: RETROPERITONEUM AND PERITONEUMOrgan: RETROPERITONEUM AND PERITONEUMTissue: Peritoneum NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/hpt5-m709
title: CERVIX UTERI, Exocervix - Female, 71 - Tissue image [6170730026738241]

description: This is the histopathological image of CERVIX UTERI tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 71Clinical description: Suspicious right ovarian tumourGender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: Exocervix with normal epithelium.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: ExocervixType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/kjw7-4s98
title: Cholesteatoma of middle ear - Female, 29 - Tissue image [6170730026742901]

description: This is the histopathological image of NASAL CAVITY AND MIDDLE EAR tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 29Clinical description: Cholesteatoma.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter VIII - Diseases of the ear and mastoid processDiagnosis: Cholesteatoma of middle earResult of the histopathological examination: Cholesteatoma.Sample:Material: FFPECollecting method: Excision of lesionsTopography: RESPIRATORY SYSTEM AND INTRATORACIC ORGANSOrgan: NASAL CAVITY AND MIDDLE EARTissue: Middle earType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/vcf0-r684
title: OTHER AN UNSPECIFIED FEMALE GENITAL ORGANS, Parametrium - Female, 66 - Tissue image [6170730026733001]

description: This is the histopathological image of OTHER AN UNSPECIFIED FEMALE GENITAL ORGANS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 66Clinical description: Status after resection of borderline ovarian tumour of the left side.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: parameetria with normal structure. Sclerosing changes in arteries.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: OTHER AN UNSPECIFIED FEMALE GENITAL ORGANSTissue: ParametriumType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/as6e-zt45
title: Granular cell tumor, NOS - Female, 62 - Tissue image [6170730026739601]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 62Clinical description: Tumor of right breast. Core needle biopsy: Granular cell tumor.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: GRANULAR CELL TUMORS AND ALVEOLAR SOFT PART SARCOMASDiagnosis: Granular cell tumor, NOSResult of the histopathological examination: Granular cell tumor: tumor composed of cells with nuclei without atypia and abundant granular cytoplasm. S100+, CD68+, Ki-67 1%.Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Inner breastType of staining: positive/IHCStaining: Not applicableAntibody: CD 68Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/crrt-px55
title: Chronic pharyngitis - Female, 85 - Tissue image [6170730026737681]

description: This is the histopathological image of PYRIFORM SINUS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 85Clinical description: Neck tumor of the left side, observed for 2 months. In FNA: Undifferentiated malignant tumor cells, IHC: p63 (-), TTF1 (-), synaptophysin (-).Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter X - Diseases of the respiratory systemDiagnosis: Chronic pharyngitisResult of the histopathological examination: The sections are covered with flat epithelium, hypertrophic areas and in sections of the pharyngeal recess with stratified epithelium, with a focal chronic inflammatory infiltrate. No cancer was found.Sample:Material: FFPECollecting method: Surgical specimenTopography: LIP, ORAL CAVITY AND PHARYNXOrgan: PYRIFORM SINUSTissue: Pyriform sinusType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk