cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/37gy448n2y.1
title: Dataset on the chemical composition of suspended particulates in waters of the Southeastern U. S. Atlantic continental shelf between ca. 28 ͦ and 33 ͦ N

description: These data were used to investigate particle provenance, transport and fate on the continental shelf off the southeastern US Atlantic coast. Samples were collected along eight transects across the shelf; four off South Carolina and N. Georgia during the spring of 1985 (SPREX) and four off Georgia and Florida during the fall of 1987 (FLEX) Significant influence of terrestrial sources of suspended particles is limited to the inner shelf, however the concentrations of some metals, such as rare earths, appear to reflect this provenance across the shelf. Mid-outer shelf particles are dominated by re-suspended biogenic carbonates and biogenic organic carbon rich particles formed in response to Gulf Stream up welled nutrients. Particulate trace element concentrations and primary production in mid-outer shelf waters are interpreted as a response to not only nutrient, but also trace metal enrichment of up welled Gulf Stream water intruded onto the shelf. Based on particle chemistry, micro nutrients such as Fe in upwelled waters may be limiting in sustaining mid-outer shelf production. Other trace metals such as Sc appear to be enriched due to adsorption on organic rich particles. And the formation SrSO4 particles, originating from Acantharian spicules, appear to create an environment for the precipitation of barite in outer shelf surface waters.
DOI: 10.17632/dw5ky37y8t.1
title: Electoral incentives and Public Employees’ Retirement Systems in Brazilian municipalities

description: Data on elections and PERS.
DOI: 10.17632/m5gyp84yz9.1
title: Motion, fixation probability and the choice of an evolutionary process

description: Raw data for the production of all figures in the manuscript with the same title.
DOI: 10.25345/c5532v
title: MassIVE MSV000083314 - DIURNAL RHYTHMS SPATIALLY AND TEMPORALLY ORGANIZE AUTOPHAGY
title: RAW spectrum files associated with "DIURNAL RHYTHMS SPATIALLY AND TEMPORALLY ORGANIZE AUTOPHAGY"
DOI: 10.17632/vbswcb8fhf.1
title: Data for: Enhanced self-adaptive global-best harmony search without any extra statistic and external archive
DOI: 10.15468/guupwr
title: CCCLXVIII. Decades Kewensis. Plantarum Novarum in Herbario Horti Regii Conservatorum. Decas VIII.

description: This dataset contains the digitized treatments in Plazi based on the original journal article Hemsley (1894): CCCLXVIII. Decades Kewensis. Plantarum Novarum in Herbario Horti Regii Conservatorum. Decas VIII. Bulletin of miscellaneous information 1894: 99-102, DOI: 10.5281/zenodo.44762
DOI: 10.25345/c51c8n
title: MassIVE MSV000083315 - Chasing tails: Cathepsin-L improves structural analysis of histones by HX-MS
title: The N-terminal regions of histone proteins (histone tails) are dynamic elements that protrude from the nucleosome and are involved in many aspects of chromatin organization. Their epigenetic role is well-established, and post-translational modifications present on these regions contribute to transcriptional regulation. Considering their biological significance, relatively few structural details have been established for histone tails, mainly due to their inherently disordered nature. While hydrogen/deuterium exchange mass spectrometry (HX-MS) is well-suited for the analysis of dynamic structures, it has seldom been employed in this context, presumably due to the poor N-terminal coverage provided by pepsin, the dominant protease in HX-MS studies. Inspired from histone-clipping events, we profiled the activity of Cathepsin-L under HX-MS quench conditions and characterized its specificity employing the four core histones (H2A, H2B, H3 and H4). Cathepsin-L demonstrated cleavage patterns that were substrate- and pH-dependent and showed optimum activity in a slightly reducing and non-denaturing environment. Cathepsin-L generated overlapping N-terminal peptides about 20 amino acids long for H2A, H3 and H4 proving its suitability for the analysis of histone tails dynamics. We developed a comprehensive HX-MS method in combination with pepsin and obtained full sequence coverage for all histones. We employed our method to analyze histones H3 and H4. We observe rapid deuterium exchange of the N-terminal tails and cooperative unfolding (EX1 kinetics) in the histone-fold domains of histone monomers in-solution. When in a mononucleosome, we find evidence for inter- or intramolecular interactions within the H4 tail but not for H3.1. Further, EX1 kinetics observed in the respective monomers are absent when in the mononucleosome, indicating stabilization of the histone-folds. The data obtained here may serve as a baseline towards the comparison of nucleosome dynamics harboring different histone variants or post-translational modifications. Overall, this novel strategy opens new avenues for investigating the dynamic properties of histones and nucleosomes that are not apparent from the crystal structures, providing insights into the structural basis of the histone code.
DOI: 10.25386/genetics.7505762
title: Supplemental material for Xu and Shaw, 2019

description: File S1 contains additional method details and supplementary results; Table S1 contains information about conserved domains in the 11 <i>Drosophila melanogaster</i> candidate genes for variation in interpulse interval of courtship song; Table S2 contains summary statistics of the linkage maps; Table S3 contains results from MQM on linkage groups other than LG5; Table S4 contains frequency distributions of the F<sub>2</sub> male pulse rates and chi-squared test results for Mendelian segregation ratios in 4C and 4E families; Table S5 shows results of functional annotation of the 66 predicted genes on the five focal scaffolds within and flanking the 1.5-LOD (same as 5-LOD) support confidence interval of the major QTL peak in 4C.9; Table S6 contains information about conserved domains in CNG and HCN channels used for protein tree construction; Table S7 contains descriptions of top blast hits and the E-values for unannotated genes in Table S5 from a blast using relaxed E-value cutoff of 100; Figure S1 shows the phenotypic distribution in NIL4B; Figure S2 shows homology and synteny of linkage groups among 6 F2 families; Figure S3 shows the linkage maps of A) NIL4C and NIL4E and B) NIL4B; Figure S4 shows the LOD profile of MQM and SIM models in NIL4B; Figure S5 shows synteny between the linkage map of 18 markers showing potential double recombination patterns on linkage group 5 and the linkage map for LG5 used for QTL mapping in 4C.9; Figure S6 shows alignment between protein sequence of the termite <i>Zootermopsis nevadensis</i> cyclic nucleotide-gated olfactory channel-like protein and the putative <i>Laupala Cngl </i>homolog.
DOI: 10.15139/s3/pje1qj
title: Replication Data for: Fiscal Accountability in Gubernatorial Elections

description: While significant research has been conducted on economic voting in gubernatorial elections, very few explore the impact of state fiscal conditions in these elections. The little that has been done yields conflicting results regarding the effects of state spending and found that governors are not held responsible for a state’s overall fiscal health. Our study examines the impact of spending and fiscal health on gubernatorial elections from 1982 to 2013. We find evidence that voters reward incumbent parties for fiscal health and spending growth and that unified government and stronger executive budget powers enhance fiscal accountability for these outcomes. These findings contradict previous research that suggests voters punish one or both parties for higher spending. We conclude by discussing the implications of this research for the debate about the balance of powers between the executive and legislative branches.
DOI: 10.25345/c5n60g
title: MassIVE MSV000083318 - DO-MS single-cell set analysis
title: Data to accompany DO-MS publication (Single-cell analysis)
DOI: 10.25345/c5rw3f
title: MassIVE MSV000083317 - DO-MS Contamination Analysis
title: Data to accompany DO-MS publication (contamination analysis)
DOI: 10.25345/c5wp5c
title: MassIVE MSV000083316 - Standard
title: Data set to accompany DO-MS publication (apex offset analysis)
DOI: 10.25345/c5hc80
title: MassIVE MSV000083319 - DO-MS controlled comparison analysis
title: Data to accompany DO-MS publication (controlled comparison analysis)
DOI: 10.6073/pasta/18bd2ff704c930fbdfeca7c0e5e5dcb6
title: North Temperate Lakes LTER: Crayfish Abundance 1981 - current

description: Crayfish data include crayfish catch in cylindrical minnow traps baited with beef liver and occasional occurrence in other gear used to sample fish. Traps are placed at fyke net locations in nine study lakes (Allequash, Big Muskellunge, Crystal, Sparkling, Trout, Mendota, Monona, Wingra and Fish). Crayfish traps have been eliminated as gear in the Madison area lakes (Mendota, Monona, Wingra, and Fish) after 2003. Individuals are identified to species and counted. In Trout and Sparkling Lake more detailed surveys have been conducted during the summer on an ad hoc basis to track distribution and abundance of the invading species Orconectes rusticus. Additional data sets consist of pre-LTER sets (initiated in late June 1972) gathered by Capelli (Ph.D. dissertation) and Lorman (Ph.D. dissertation). Most of pre-LTER data is detailed distribution in Trout Lake, and community composition in other area lakes. Sampling Frequency: annually Number of sites: 9
DOI: 10.6073/pasta/1aae01b520f42bdeb3fc9cad66ee5f16
title: North Temperate Lakes LTER: Fish Abundance 1981 - current

description: This data set is a derived data set based on fish catch data. Data are collected annually to enable us to track the fish assemblages of eleven primary lakes (Allequash, Big Muskellunge, Crystal, Sparkling, Trout, bog lakes 27-02 [Crystal Bog] and 12-15 [Trout Bog], Mendota, Monona, Wingra and Fish). Sampling on Lakes Monona, Wingra, and Fish started in 1995; sampling on other lakes started in 1981. Sampling is done at six littoral zone sites per lake with seine, minnow or crayfish traps, and fyke nets; a boat-mounted electrofishing system samples three littoral transects. Vertically hung gill nets are used to obtain two pelagic samples per lake from the deepest point. A trammel net samples across the thermocline at two sites per lake. In the bog lakes only fyke nets and minnow traps are deployed. Parameters measured include species-level identification and lengths for all fish caught, and weight and scale samples from a subset. Derived data sets include species richness, catch per unit effort, and size distribution by species, lake, and year. Dominant species vary from lake to lake. Perch, rockbass, and bluegill are common, with walleye, large and smallmouth bass, northern pike and muskellunge as major piscivores. Cisco have been present in the pelagic waters of four lakes, and the exotic species, rainbow smelt, is present in two. The bog lakes contain mudminnows. Protocol used to generate data:  Day seines were only used in 1981 and have been eliminated from this data set to make sampling effort across years comparable. Number caught for each species is summed over repetitions of a gear within a lake and over depth For information on fish stocking by Wisconsin Department of Natural Resouces in LTER lakes in Dane and Vilas counties, see http://infotrek.er.usgs.gov/doc/wdnr_biology/Public_Stocking/StateMapHot... Sampling Frequency: annually Number of sites: 11
DOI: 10.25345/c5cp63
title: MassIVE MSV000083320 - GNPS_Homechem_LCMS_data
title: Samples from the HomeChem study. The samples were collected using swabs moistened with ethanol by swabbing surface for ~ 1 min. The metabolites from swabs were then extracted with ethanol.
DOI: 10.14469/hpc/4947
title: 5Br2 + 2,4,6-tributylbenzene in CCl4, WI-III after 1,2 shift, GD3BJ Def2-TZVPP -26445.889497

description: Gaussian Calculation
DOI: 10.5281/zenodo.2538847
title: Application Cases of Inverse Modelling with the PROPTI Framework - Data Set

description: <strong>Contents</strong>

Set of simulation data, supplementary for a paper submitted to the Fire Safety Journal, with the title "Application Cases of Inverse Modelling with the PROPTI Framework".

This repository contains the complete input data for each IMP run of the mass loss calorimeter, shown in this paper. This comprises of the experimental data files, the templates for the simulation models and the input file for PROPTI.

The data base files are provided. This includes the original ones created by PROPTI during the run, as well as the cleaned data base files, used to create the plots, and the extracted best parameter sets per generation. Plots, created during the IMP runs as means of monitoring the progress are also included.

Furthermore, the repository contains a small collection Jupyter notebooks which have been used to process the data base files and create the plots presented in this paper.

The full factorial simulations were set up from within a Jupyter notebook. This notebook and the conducted simulations are also part of this repository.

Data of the various TGA simulations are provided within a very similar repository, linked to a conference paper.

Finally, the simulation input files, PROPTI input, as well as the custom script for file handling in concert with OpenFOAM, are provided.

 

<strong>Technical Information</strong>

Each ZIP archive represents a sub-directory of the original directory. For the analysis scripts, the Jupyter notebooks, to work properly out of the box it is necessary to keep this structure. Thus, simply extract all archives into the same directory.

Note: Size on disc, after extraction, is about 4.1 GB.
DOI: 10.25345/c57w3s
title: MassIVE MSV000083321 - AP-MS analysis using Flp-In-293 cells stably expressing ARID4B with N-terminal HaloTag
title: AP-MS analysis using Flp-In-293 cells stably expressing ARID4B with N-terminal HaloTag
DOI: 10.25345/c54616
title: MassIVE MSV000083322 - AP-MS analysis using Flp-In-293 cells stably expressing BRMS1 with N-terminal HaloTag
title: AP-MS analysis using Flp-In-293 cells stably expressing BRMS1 with N-terminal HaloTag
DOI: 10.25345/c50c8b
title: MassIVE MSV000083323 - AP-MS analysis using Flp-In-293 cells stably expressing BRMS1L with N-terminal HaloTag
title: AP-MS analysis using Flp-In-293 cells stably expressing BRMS1L with N-terminal HaloTag
DOI: 10.21227/czvk-0m66
title: EMG

description: — The Ionic Polymer Metal Composite (IPMC) actuator is a group of Electro-Active Polymer (EAP) which bends in response to a relatively low electrical voltage because of the motion of cations in the polymer network. IPMC has a wide range of applications in robotics, biomedical devices and artificial muscles. This paper presents a fuzzy logic approach to the electromyography (EMG) pattern recognition for an IPMC actuating system with the EMG signal. EMG signals generated by the contraction of muscles in the human forearm are used as an electrical stimulus for actuating the IPMC actuator. EMG is a method of recording and quantifying the electrical activity produced by the muscle fibers of the activated motor units. The fuzzy inference system is a system used to map an input feature onto an output class. Fuzzy data clustering is used to categorize the muscle signals and recognize the contraction of the muscle. The mechanical design matters such as light weight and small size with flexible behavior should also be considered. The IPMC has been vastly utilized as an artificial muscle because it can be constructed in a straight way and is driven by a relatively low input voltage. The EMG signal generated by the human flexor CarpiUlnaris muscle is pre-amplified before being transferred to the IPMC for achieving a large bending behavior. The experimental results confirm the ability of the IPMC to function as an artificial muscle actuated by the EMG signals
DOI: 10.25345/c5vp6f
title: MassIVE MSV000083324 - AP-MS analysis using Flp-In-293 cells stably expressing GATAD1 with N-terminal HaloTag
title: AP-MS analysis using Flp-In-293 cells stably expressing GATAD1 with N-terminal HaloTag
DOI: 10.25345/c5qw4h
title: MassIVE MSV000083325 - AP-MS analysis using Flp-In-293 cells stably expressing HDAC1 with C-terminal HaloTag
title: AP-MS analysis using Flp-In-293 cells stably expressing HDAC1 with C-terminal HaloTag
DOI: 10.6073/pasta/c0b0ba1534838e1ea5f649bc2e7563ad
title: Weather data from Screwdriver Knob, Coweeta Hydrologic Laboratory

description: This data set contains measurements of air temperature, relative humidity, wind speed, wind direction, PAR density, and rainfall from a site located on Screwdriver Knob,Coweeta Hyrdologic Laboratory, Otto, NC. Air temperature, relative humidity, wind speed, and PAR density are measured every 60 seconds with average, minimum, maximum, and discrete top of the hour values saved to the output data table hourly. Wind direction is measured every 60 seconds with the average value saved to the output data table every hour. Hourly rainfall is totalized and a continuous 24 hour rainfall value is calculated. Calculations for dew point, heat index, wind chill, and wind vector are calculated hourly and saved to the output data table.
DOI: 10.6073/pasta/340e5eba913cbcd66cea2c53701f3f65
title: PIE LTER marsh vegetation cover data from quadrats along  transects through two hayed and two reference sites near Stackyard Rd, Rowley, MA

description: Marsh vegetation cover data from quadrats along transects through two formerly hayed and two reference sites in the vicinity of Stackyard Road and Patmos Road, Rowley, MA.
DOI: 10.5281/zenodo.2541192
title: SIMPATICO_ES_Citizenpedia_InterimExport

description: The current package contains the questions and answers created by citizens using the Citizenpedia in the Galicia evaluation of the results of H2020 project SIMPATICO that were undertaken on October 2017. The data is exported from the MongoDB instance that was used to manage all the Citizenpedia content. For more information about the setup for conducting the tests and the results achieved please consult project deliverable "D6.6 SIMPATICO Evaluation Report v1". All project deliverables, except where noted, are public and are available at Zenodo community reachable at https://zenodo.org/communities/h2020-simpatico-692819.

The following caveats need to be highlighted for this data set:

- The format is JSON (Javascript objects) as provided by mongodb export tool. 

- Data is completely anonymized: no traces of personal data for any of the participants can be found in this file.
DOI: 10.5281/zenodo.2541193
title: SIMPATICO First Evaluation Galicia Citizenpedia Dataset v1.0

description: The current package contains the questions and answers created by citizens using the Citizenpedia in the Galicia evaluation of the results of H2020 project SIMPATICO that were undertaken on October 2017. The data is exported from the MongoDB instance that was used to manage all the Citizenpedia content. For more information about the setup for conducting the tests and the results achieved please consult project deliverable "D6.6 SIMPATICO Evaluation Report v1". All project deliverables, except where noted, are public and are available at Zenodo community reachable at https://zenodo.org/communities/h2020-simpatico-692819.

The following caveats need to be highlighted for this data set:

- The format is JSON (Javascript objects) as provided by mongodb export tool. 

- Data is completely anonymized: no traces of personal data for any of the participants can be found in this file.
DOI: 10.5281/zenodo.2541194
title: SIMPATICO_ES_Citizenpedia_InterimExport

description: The current package contains the questions and answers created by citizens using the Citizenpedia in the Galicia evaluation of the results of H2020 project SIMPATICO that were undertaken on October 2017. The data is exported from the MongoDB instance that was used to manage all the Citizenpedia content. For more information about the setup for conducting the tests and the results achieved please consult project deliverable "D6.6 SIMPATICO Evaluation Report v1". All project deliverables, except where noted, are public and are available at Zenodo community reachable at https://zenodo.org/communities/h2020-simpatico-692819.

The following caveats need to be highlighted for this data set:

- The format is JSON (Javascript objects) as provided by mongodb export tool. 

- Data is completely anonymized: no traces of personal data for any of the participants can be found in this file.
DOI: 10.5517/ccdc.csd.cc1njt22
title: CCDC 1535494: Experimental Crystal Structure Determination

description: Related Article: Lei Wu, Gérald Chaplais, Ming Xue, Shilun Qiu, Joël Patarin, Angélique Simon-Masseron, Huaxin Chen|2019|RSC Advances|9|1918|doi:10.1039/C8RA08522F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1njt33
title: CCDC 1535495: Experimental Crystal Structure Determination

description: Related Article: Lei Wu, Gérald Chaplais, Ming Xue, Shilun Qiu, Joël Patarin, Angélique Simon-Masseron, Huaxin Chen|2019|RSC Advances|9|1918|doi:10.1039/C8RA08522F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1njt44
title: CCDC 1535496: Experimental Crystal Structure Determination

description: Related Article: Lei Wu, Gérald Chaplais, Ming Xue, Shilun Qiu, Joël Patarin, Angélique Simon-Masseron, Huaxin Chen|2019|RSC Advances|9|1918|doi:10.1039/C8RA08522F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1nxbnk
title: CCDC 1546579: Experimental Crystal Structure Determination

description: Related Article: Masanari Hirahara, Hiroki Goto, Rei Yamamoto, Masayuki Yagi, Yasushi Umemura|2019|RSC Advances|9|2002|doi:10.1039/C8RA08943D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25345/c5m605
title: MassIVE MSV000083326 - AP-MS analysis using Flp-In-293 cells stably expressing HDAC2 with C-terminal HaloTag
title: AP-MS analysis using Flp-In-293 cells stably expressing HDAC2 with C-terminal HaloTag
DOI: 10.25345/c5gc92
title: MassIVE MSV000083327 - AP-MS analysis using Flp-In-293 cells stably expressing ING1 with N-terminal HaloTag
title: AP-MS analysis using Flp-In-293 cells stably expressing ING1 with N-terminal HaloTag
DOI: 10.25345/c5bp5d
title: MassIVE MSV000083328 - AP-MS analysis using Flp-In-293 cells stably expressing ING2 with N-terminal HaloTag
title: AP-MS analysis using Flp-In-293 cells stably expressing ING2 with N-terminal HaloTag
DOI: 10.17632/3pf4pmmczx.1
title: Data for: Predicting stock market crises using daily stock market valuation and investor sentiment indicators
DOI: 10.25345/c56w4v
title: MassIVE MSV000083329 - AP-MS analysis using Flp-In-293 cells stably expressing PHF12 with N-terminal HaloTag
title: AP-MS analysis using Flp-In-293 cells stably expressing PHF12 with N-terminal HaloTag