cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6815297
title: FoxD3 project

description: <br>The neural crest (NC) is a transient embryonic stem cell population characterised by its multipotency and broad developmental potential. We have performed NC-specific transcriptional and epigenomic profiling of foxd3-mutant versus wild type cells in vivo to define the gene regulatory circuits controlling NC specification. Together with global binding analysis obtained by foxd3 biotin-ChIP and single cell profiles of foxd3-expressing premigratory NC, our analysis shows that during early steps of NC formation, foxd3 acts globallyas a pioneer factor to prime the onset of genes regulating NC specification and migration by re-arranging the chromatin landscape, opening cis-regulatory elements and reshuffling nucleosomes. Strikingly, foxd3 then switches from an activator to its canonical role as a transcriptional repressor. Taken together, these results demonstrate that foxd3 acts bimodally in the neural crest as a switch from permissive to repressive nucleosome/chromatin organisation to maintain stemness and define cell fates.
DOI: 10.6084/m9.figshare.6815297.v2
title: FoxD3 project

description: <br>The neural crest (NC) is a transient embryonic stem cell population characterised by its multipotency and broad developmental potential. We have performed NC-specific transcriptional and epigenomic profiling of foxd3-mutant versus wild type cells in vivo to define the gene regulatory circuits controlling NC specification. Together with global binding analysis obtained by foxd3 biotin-ChIP and single cell profiles of foxd3-expressing premigratory NC, our analysis shows that during early steps of NC formation, foxd3 acts globallyas a pioneer factor to prime the onset of genes regulating NC specification and migration by re-arranging the chromatin landscape, opening cis-regulatory elements and reshuffling nucleosomes. Strikingly, foxd3 then switches from an activator to its canonical role as a transcriptional repressor. Taken together, these results demonstrate that foxd3 acts bimodally in the neural crest as a switch from permissive to repressive nucleosome/chromatin organisation to maintain stemness and define cell fates.
DOI: 10.6084/m9.figshare.6815297.v1
title: FoxD3 project

description: <br>The neural crest (NC) is a transient embryonic stem cell population characterised by its multipotency and broad developmental potential. We have performed NC-specific transcriptional and epigenomic profiling of foxd3-mutant versus wild type cells in vivo to define the gene regulatory circuits controlling NC specification. Together with global binding analysis obtained by foxd3 biotin-ChIP and single cell profiles of foxd3-expressing premigratory NC, our analysis shows that during early steps of NC formation, foxd3 acts globallyas a pioneer factor to prime the onset of genes regulating NC specification and migration by re-arranging the chromatin landscape, opening cis-regulatory elements and reshuffling nucleosomes. Strikingly, foxd3 then switches from an activator to its canonical role as a transcriptional repressor. Taken together, these results demonstrate that foxd3 acts bimodally in the neural crest as a switch from permissive to repressive nucleosome/chromatin organisation to maintain stemness and define cell fates.
DOI: 10.6084/m9.figshare.6815288
title: Database mammal abundance declines

description: 3281 mammal abundance ratios in hunted and unhunted areas with socio-economic predictors of hunting pressure and species traits. See the metada file for details on the variables included
DOI: 10.6084/m9.figshare.6815135
title: DATA

description: The data files of Figures presented in paper.
DOI: 10.6084/m9.figshare.6815102
title: Prueba.txt

description: Rainfall Stats
DOI: 10.6084/m9.figshare.6815102.v1
title: Prueba.txt

description: Rainfall Stats
DOI: 10.5517/ccdc.csd.cct3vf5
title: CCDC 748477: Experimental Crystal Structure Determination

description: Related Article: Mingyu Dou, Hua Yang, Xiaojuan Zhao, Zhen Zhang, Dacheng Li, Jianmin Dou|2020|Inorg.Chem.Commun.|119|108127|doi:10.1016/j.inoche.2020.108127
DOI: 10.5517/ccdc.csd.cc20mv5p
title: CCDC 1866112: Experimental Crystal Structure Determination

description: Related Article: Rosa Elvira Sánchez-Fernández, Rosalía Sánchez-Fuentes, Hiram Rangel-Sánchez, Simón Hernández-Ortega, José G. López-Cortés, Martha Lydia Macías-Rubalcava|2020|Pesticide Biochemistry and Physiology|169|104670|doi:10.1016/j.pestbp.2020.104670
DOI: 10.5517/ccdc.csd.cc21y8gr
title: CCDC 1904964: Experimental Crystal Structure Determination

description: Related Article: Tianzi Dai, Chen Cui, Xueyu Qi, Yanshu Cheng, Qian He, Xiaofei Zhang, Xiaomin Luo, Chunhao Yang|2020|Org.Biomol.Chem.|18|6162|doi:10.1039/D0OB01019G
DOI: 10.6084/m9.figshare.6814781
title: Plant-Pollinator interactions along an elevational gradient of the oceanic high-mountain volcano (El Teide, Canary Islands )

description: Flower-visiting animals were observed on the plant species from 15<sup>th</sup> May to 15<sup>th</sup> August, for two consecutive years (2014 and 2015), coinciding with the flowering of all plant species in the different elevational communities. The censuses were carried out between 9:00 and 19:00 h, avoiding the beginning and the end of the day, with usually low temperatures and little insect activity in this high mountain environment, and also avoiding windy days. All plant species were censused 7-8 hours per locality and year, throughout the flowering phenology of each plant species, to maximize the possibility of detecting different floral visitors. Each census lasted 15 minutes, during which the observer remained facing the plant, registering all insects contacting the flowers as well as, whenever possible, the number of flowers contacted per individual. We recorded a plant-pollinator interaction when an insect maintained contact with the reproductive organs of a flower for more than 1 second. Thus, all flower-visiting insects that feed on flowers were recorded, regardless of the efficacy of their visit. Insects were either identified in the field or collected for later identification in the laboratory. During the entire study period, a total of 868 observation hours were spent during 57 observation days.
DOI: 10.6084/m9.figshare.6814691
title: Upriver and downriver migration processes of Chinese sturgeon

description: The data of Fig.2 is obtained by our MDM, and that of Fig4 by the CGPM.
DOI: 10.6084/m9.figshare.6814691.v1
title: Upriver and downriver migration processes of Chinese sturgeon

description: The data of Fig.2 is obtained by our MDM, and that of Fig4 by the CGPM.
DOI: 10.6084/m9.figshare.6814664
title: OLD

description: About<br>
DOI: 10.6084/m9.figshare.6814664.v2
title: OLD

description: About<br>
DOI: 10.6084/m9.figshare.6814664.v1
title: Accessibility and topics of citations with identifiers in Wikipedia

description: An extended version of the dataset "Citation with Identifiers" [1] with topic and accessibility informationWhen possible, we associated each publication with identifier cited in Wikipedia with 1) the publication topic and 2) the information about its accessibility (e.g. if it has open access).TopicsWhen possible, we have assigned a topic to each publication, by looking at the main topics of the pages citing a publication. See [2] for more details on how we infer topics.AccessibilityWe mark each DOI publication as <i>Open Access</i> or <i>Closed Access</i> by merging our data with Unpaywall [3] data.<br>Data FormatThere is a file for each Wikipedia edition (e.g. English Wikipedia, Farsi Wikipedia). Each line contains the following tab-separated values:<b>page_id</b> - the id of the Wikipedia page citing the publication, see [4]<b>page_name</b> - the title of the Wikipedia page citing the publication<b>revision_id</b> - the id of the revision where the citation has been added, see [4]<b>timestamp</b> - the time when the revision has been saved<b>publication_type</b> - the type of the publication cited, it can be: <i>isbn,doi,pmid,pmc,arxiv</i><b>publication_id</b> - the identifier of the publication, format differs according to the type<b>topic</b> - publication topic inherited from the pages where it is cited. It can take one of the values at the top level of the Wikiprojects Hierarchy [5]<b>open_access</b> - boolean: true if the publication is open access, false if it is not open access [for DOI publications only]<b>open_access_url</b> - the url of the open access version of the publication, if 'open_access' is trueVisualizationsVisualisations summarising the data in this repository can be found in this notebook: visualizations <br><br>[1] https://figshare.com/articles/Wikipedia_Scholarly_Article_Citations/1299540[2] https://meta.wikimedia.org/wiki/Research:Towards_Modeling_Citation_Quality[3] http://unpaywall.org/data-format[4] https://www.mediawiki.org/wiki/Manual:Revision_table[5] https://en.wikipedia.org/wiki/Wikipedia:WikiProject_Council/Directory
DOI: 10.6084/m9.figshare.6814631
title: Supplementary Material for: Placental Proinflammatory State and Maternal Endothelial Dysfunction in Preeclampsia

description: <b><i>Objective:</i></b> To evaluate the placental and decidual gene expression and maternal and umbilical serum concentrations of tumor necrosis factor alpha, interleukin 6 (IL-6), IL-8, IL-10, IL-1 receptor antagonist (IL-1RA), intercellular adhesion molecule-1 and vascular cell adhesion molecule-1 (VCAM-1), along with the proinflammatory/anti-inflammatory cytokine ratios in women with preeclampsia (PE) vs. women with normal pregnancy (NP), and to analyze PE classified as early- (EO) and late-onset (LO). <b><i>Methods:</i></b> This cross-sectional study was performed with 50 women with PE (EO <i>n</i> = 30, LO <i>n</i> = 20) and 50 women with NP. Tissue gene expression levels were measured by real-time RT-PCR. Cytokines and adhesion molecules serum concentrations were measured by immunoassays. <b><i>Results:</i></b> In PE, placental expression of IL-10 and IL-1RA was lower, while placental IL-8/IL-1RA ratio and maternal concentrations of VCAM-1 were higher vs. NP. In EO, placental expression of IL-10 was lower, while placental IL-8/IL-10 and IL-8/IL-1RA ratios were higher than LO and NP. Maternal concentrations of IL-6 were higher in LO than EO and NP. Throughout PE, maternal VCAM-1 concentrations were higher vs. NP. No significant differences were observed in the decidual expression and umbilical concentrations of the markers between the groups. <b><i>Conclusion:</i></b> PE associates with a proinflammatory placental state; however, EO associates with a proinflammatory placental state, while LO associates with systemic maternal inflammation. Both subtypes associated with maternal endothelial dysfunction.
DOI: 10.6084/m9.figshare.6814628
title: Raw data for Gloaguen et al

description: Supplemental information of Gloaguen E, Broséus L and Morilla I. Statistical Learning Methods for Colorectal Cancer Signature Reconstruction and Classification in Patients with Chronic Inflammatory Bowel Disease.
DOI: 10.6084/m9.figshare.6814631.v1
title: Supplementary Material for: Placental Proinflammatory State and Maternal Endothelial Dysfunction in Preeclampsia

description: <b><i>Objective:</i></b> To evaluate the placental and decidual gene expression and maternal and umbilical serum concentrations of tumor necrosis factor alpha, interleukin 6 (IL-6), IL-8, IL-10, IL-1 receptor antagonist (IL-1RA), intercellular adhesion molecule-1 and vascular cell adhesion molecule-1 (VCAM-1), along with the proinflammatory/anti-inflammatory cytokine ratios in women with preeclampsia (PE) vs. women with normal pregnancy (NP), and to analyze PE classified as early- (EO) and late-onset (LO). <b><i>Methods:</i></b> This cross-sectional study was performed with 50 women with PE (EO <i>n</i> = 30, LO <i>n</i> = 20) and 50 women with NP. Tissue gene expression levels were measured by real-time RT-PCR. Cytokines and adhesion molecules serum concentrations were measured by immunoassays. <b><i>Results:</i></b> In PE, placental expression of IL-10 and IL-1RA was lower, while placental IL-8/IL-1RA ratio and maternal concentrations of VCAM-1 were higher vs. NP. In EO, placental expression of IL-10 was lower, while placental IL-8/IL-10 and IL-8/IL-1RA ratios were higher than LO and NP. Maternal concentrations of IL-6 were higher in LO than EO and NP. Throughout PE, maternal VCAM-1 concentrations were higher vs. NP. No significant differences were observed in the decidual expression and umbilical concentrations of the markers between the groups. <b><i>Conclusion:</i></b> PE associates with a proinflammatory placental state; however, EO associates with a proinflammatory placental state, while LO associates with systemic maternal inflammation. Both subtypes associated with maternal endothelial dysfunction.
DOI: 10.6084/m9.figshare.6814628.v2
title: Raw data for Gloaguen et al

description: Supplemental information of Gloaguen E, Broséus L and Morilla I. Statistical Learning Methods for Colorectal Cancer Signature Reconstruction and Classification in Patients with Chronic Inflammatory Bowel Disease.
DOI: 10.6084/m9.figshare.6814628.v1
title: Raw data for Gloaguen et al

description: Supplemental information of Gloaguen E, Broséus L, Mullaert J, Tréton X, Morilla I. Statistical Learning Methods for Colorectal Cancer Network Reconstruction and Classification in Patients with Chronic Inflammatory Bowel Disease.
DOI: 10.6084/m9.figshare.6814556
title: Economic burden of hospital malnutrition and the cost–benefit of supplemental parenteral nutrition in critically ill patients in Latin America

description: <b>Aim:</b> Disease-related malnutrition (DRM) is a prevalent condition that significantly increases the risk of adverse outcomes in hospitalized patients, particularly those with critical illness. Limited data is available on the economic burden of DRM and the cost–benefit of nutrition therapy in high-risk populations in Latin America. The aims of the present study were to estimate the economic burden of DRM and evaluate the cost–benefit of supplemental parenteral nutrition (SPN) in critically ill patients who fail to receive adequate nutrient intake from enteral nutrition (EN) in Latin America. <b>Methods:</b> Country-specific cost and prevalence data from eight Latin American countries and clinical data from studies evaluating outcomes in patients with DRM were used to estimate the costs associated with DRM in public hospitals. A deterministic decision model based on clinical outcomes from a randomized controlled study and country-specific cost data were developed to examine the cost–benefit of administering SPN to critically ill adults who fail to reach ≥60% of the calculated energy target with EN. <b>Results:</b> The estimated annual economic burden of DRM in public hospitals in Latin America is $10.19 billion (range, $8.44 billion–$11.72 billion). Critically ill patients account for a disproportionate share of the costs, with a 6.5-fold higher average cost per patient compared with those in the ward ($5488.35 vs. $839.76). Model-derived estimates for clinical outcomes and resource utilization showed that administration of SPN to critically ill patients who fail to receive the targeted energy delivery with EN would result in an annual cost reduction of $10.2 million compared with continued administration of EN alone. <b>Limitations:</b> The cost calculation was limited to the average daily cost of stay and antibiotic use. The costs associated with other common complications of DRM, such as prolonged duration of mechanical ventilation or more frequent readmission, are unknown. <b>Conclusions:</b> DRM imposes a substantial economic burden on Latin American countries, with critically ill patients accounting for a disproportionate share of costs. Cost–benefit analysis suggests that both improved clinical outcomes and significant cost savings can be achieved through the adoption of SPN as a therapeutic strategy in critically ill patients who fail to receive adequate nutrient intake from EN.
DOI: 10.6084/m9.figshare.6814556.v2
title: Economic burden of hospital malnutrition and the cost–benefit of supplemental parenteral nutrition in critically ill patients in Latin America

description: <b>Aim:</b> Disease-related malnutrition (DRM) is a prevalent condition that significantly increases the risk of adverse outcomes in hospitalized patients, particularly those with critical illness. Limited data is available on the economic burden of DRM and the cost–benefit of nutrition therapy in high-risk populations in Latin America. The aims of the present study were to estimate the economic burden of DRM and evaluate the cost–benefit of supplemental parenteral nutrition (SPN) in critically ill patients who fail to receive adequate nutrient intake from enteral nutrition (EN) in Latin America. <b>Methods:</b> Country-specific cost and prevalence data from eight Latin American countries and clinical data from studies evaluating outcomes in patients with DRM were used to estimate the costs associated with DRM in public hospitals. A deterministic decision model based on clinical outcomes from a randomized controlled study and country-specific cost data were developed to examine the cost–benefit of administering SPN to critically ill adults who fail to reach ≥60% of the calculated energy target with EN. <b>Results:</b> The estimated annual economic burden of DRM in public hospitals in Latin America is $10.19 billion (range, $8.44 billion–$11.72 billion). Critically ill patients account for a disproportionate share of the costs, with a 6.5-fold higher average cost per patient compared with those in the ward ($5488.35 vs. $839.76). Model-derived estimates for clinical outcomes and resource utilization showed that administration of SPN to critically ill patients who fail to receive the targeted energy delivery with EN would result in an annual cost reduction of $10.2 million compared with continued administration of EN alone. <b>Limitations:</b> The cost calculation was limited to the average daily cost of stay and antibiotic use. The costs associated with other common complications of DRM, such as prolonged duration of mechanical ventilation or more frequent readmission, are unknown. <b>Conclusions:</b> DRM imposes a substantial economic burden on Latin American countries, with critically ill patients accounting for a disproportionate share of costs. Cost–benefit analysis suggests that both improved clinical outcomes and significant cost savings can be achieved through the adoption of SPN as a therapeutic strategy in critically ill patients who fail to receive adequate nutrient intake from EN.
DOI: 10.6084/m9.figshare.6814553
title: Revisión enseñanza BBDD en Grados en España

description: Systematic review of the syllabus of "Database" related courses in undergraduate program in Spanish Universities.<br>
DOI: 10.6084/m9.figshare.6814556.v1
title: Economic burden of hospital malnutrition and the cost-benefit of supplemental parenteral nutrition in critically ill patients in Latin America

description: <b><i>Aim:</i></b> Disease related malnutrition (DRM) is a prevalent condition that significantly increases the risk of adverse outcomes in hospitalized patients, particularly those with critical illness. Limited data are available on the economic burden of DRM and the potential cost-benefit of nutrition therapy in high-risk populations in Latin America. The aims of the present study were to estimate the economic burden of DRM and evaluate the cost-benefit of supplemental parenteral nutrition (SPN) in critically ill patients who fail to receive adequate nutrient intake from enteral nutrition (EN) in Latin America. <b><i>Methods:</i></b> Country-specific cost and prevalence data from eight Latin American countries and clinical data from studies evaluating outcomes in patients with DRM were used to estimate the costs associated with DRM in public hospitals. A deterministic decision model based on clinical outcomes from a randomized controlled study and country-specific cost data was developed to examine the cost-benefit of administering SPN to critically ill adults who fail to reach ≥60% of the calculated energy target with EN. <b><i>Results:</i></b> The estimated annual economic burden of DRM in public hospitals in Latin America is $10.19 billion (range, $8.44 billion–$11.72 billion). Critically ill patients account for a disproportionate share of the costs, with a 6.5-fold higher average cost per patient compared with those in the ward ($5,488.35 vs. $839.76). Model-derived estimates for clinical outcomes and resource utilization showed that administration of SPN to critically ill patients who fail to receive the targeted energy delivery with EN would result in an annual cost reduction of $10.2 million compared with continued administration of EN alone. <b><i>Limitations:</i></b> The cost calculation was limited to the average daily cost of stay and antibiotic use; the effect of SPN on costs associated with other common complications of DRM such as prolonged duration of mechanical ventilation or more frequent readmission is unknown. <b><i>Conclusions:</i></b> DRM imposes a substantial economic burden on Latin American countries, with critically ill patients accounting for a disproportionate share of costs. Cost-benefit analysis suggests that both improved clinical outcomes and significant cost savings can be achieved through the adoption of SPN as a therapeutic strategy in critically ill patients who fail to receive adequate nutrient intake from EN.
DOI: 10.6084/m9.figshare.6814550
title: Predicting the Results of Evaluation Procedures of Academics: Additional Materials

description: Additional materials containing the results of the analyses described in the paper entitled "Predicting the Results of Evaluation Procedures of Academics".In the tables, Precision (P), Recall (R) and F-Measure (FM) values are reported for each Recruitment Field (RF) and Area. The results are ordered in descending order with respect to the F-measure values. Non-bibliometric disciplines have a gray background.The data are organized as follows:<b>-Table 1:</b> contains the performance of the SVM algorithm for academic level I (Full Professor) using 291 predictors. Analysis of the 184 recruitment fields;<b>-Table 2:</b> contains the performance of the SVM algorithm for academic level II (Associate Professor) using 291 predictors. Analysis of the 184 recruitment fields;<b>-Table 3:</b> contains the performance of the SVM algorithm for academic level I (full Professor) and II (Associate Professor). Analysis of the scientific areas;<b>-Table 4:</b> contains the performance of the SVM algorithm for academic level I (Full Professor) using the top 15 predictors. Analysis of the 184 recruitment fields;<b>-Table 5:</b> contains the performance of the SVM algorithm for academic level II (Associate Professor) using the top 15 predictors. Analysis of the 184 recruitment fields.<br>