cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34943/f201fe41-5283-4b74-8fa4-6da9111f96fa
title: Hercules Conductivity Temperature Depth Deployed 2024-06-04

description: The Sea-Bird SeaCAT SBE19plus V2 7875 was deployed on 2024-06-04 on Hercules. This Remotely Operated Vehicle is operated by Ocean Exploration Trust. This device is a Conductivity Temperature Depth. Conductivity Temperature Depth (CTD) is an instrument package that contains sensors for measuring the conductivity, temperature, and pressure of seawater. Salinity, sound velocity, depth and density are variables that can be derived from sensor measurements. CTDs can carry additional instruments and sensors such as oxygen sensors, turbidity sensors and fluorometers. It was deployed on a mobile platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/deae043c-d934-44cd-84fb-3ee690dbd75e
title: Hercules Oxygen Sensor Deployed 2024-06-04

description: The Sea-Bird SBE 43 Oxygen (S/N 4457) was deployed on 2024-06-04 on Hercules. This Remotely Operated Vehicle is operated by Ocean Exploration Trust. This device is a Oxygen Sensor. Oxygen sensors measure dissolved oxygen concentration in seawater. It was deployed on a mobile platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.15468/dl.g3gppb
title: Occurrence Download

description: A dataset containing 2481 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microbiotheria"
 ]
}

 The dataset includes 2481 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002055-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27301902.v1
title: Supplementary Material for: Disruption Driving Innovation: Optimising Efficiency in Functional Neurosurgery

description: Introduction: Rising NHS waiting lists are a major problem following the COVID-19 pandemic. In our institution, surgical waiting time for elective functional neurosurgical procedures, such as deep brain stimulation (DBS) and radiofrequency ablation (RFA), reached &gt;1.5 years by the end of 2022. During 2023, reduced operating room availability, interventional MRI (iMRI) suite closure for refurbishment, and ongoing strikes threatened to increase waiting times further.
Methods: Our previous surgical workflow for DBS and RFA procedures was examined. Several aspects were identified, and changes implemented to increase efficiency. Procedure numbers, waiting times, lead placement accuracy, and complication rates before and after these changes were compared.
Results: Prior to 2023, An average of 0.8 new procedures were performed per surgical list. Introduction of a new workflow in 2023 allowed an average of 1.6 new procedures per surgical list (100% increase in productivity). In 2023, 95 DBS and 31 RFA procedures were performed on 79 surgical lists. This represents a 52% increase over “pre-pandemic” activity in 2019 (74 DBS, 9 RFA) on 102 available surgical lists. Mean (SD) targeting accuracy [0.8 (0.4) mm] was comparable to previous years [0.9(0.3) mm]. In 2023, there were no infections requiring hardware removal and only one asymptomatic haemorrhage following an RFA procedure. The surgical waiting time was reduced from &gt;1.5 years to &lt;4 months by the end of 2023. 
Conclusion: Changes in surgical workflow, with neurosurgeons working in parallel, maximise surgical efficiency and productivity, significantly increasing the number of DBS and RFA procedures without compromising accuracy and safety.
DOI: 10.5281/zenodo.10953109
title: Data and R code used in Hennecke et al. "Plant species richness and the root economics space drive soil fungal communities"

description: To investigate how plant diversity and root traits relate to soil fungal communities, in 2021 we collected trait data from plots in the Jena Experiment (https://the-jena-experiment.de; funded by the DFG FOR 5000) and characterized fungal communities by sequencing, respiration and lipid fatty acid quantification. 
description: This upload contain the following files:



Assembled_data.csv: Assembled and processed data containing information on experimental plots, root traits, and microbial properties.

Metdata.pdf: Meta data file of 'Assembled_data'

phyloseq_73: Phyloseq object that inlcudes the OTU table and taxonomy of the fungal community.

Hennecke_et_al_Rcode.Rmd: R markdown file that includes the code for statistical analyses and plots of: 



PCA of root traits.

Plots and linear mixed model testing the links between rotated PC axes from PCA in 1. with the plant species richness gradient. 

Plots and linear mixed model testing the link between the plant species richness gradinent and the root trait gradients from 1. with the Shannon diversity and relative abundance of the soil fungal guilds: saprotrophs, plant pathogens and arbuscular mycorrhiza. 

Plots and linear mixed model testing the links between fine root biomass, fungal PLFA concentration, soil microbial biomass carbon and the fungal : bacterial ratio with plant species richness and the root trait gradients from 1. 

Supplementary Figures and Tables
DOI: 10.5281/zenodo.13990357
title: Data and R code used in Hennecke et al. "Plant species richness and the root economics space drive soil fungal communities"

description: To investigate how plant diversity and root traits relate to soil fungal communities, in 2021 we collected trait data from plots in the Jena Experiment (https://the-jena-experiment.de; funded by the DFG FOR 5000) and characterized fungal communities by sequencing, respiration and lipid fatty acid quantification. 
description: This upload contain the following files:



Assembled_data.csv: Assembled and processed data containing information on experimental plots, root traits, and microbial properties.

Metdata.pdf: Meta data file of 'Assembled_data'

phyloseq_73: Phyloseq object that inlcudes the OTU table and taxonomy of the fungal community.

Hennecke_et_al_Rcode.Rmd: R markdown file that includes the code for statistical analyses and plots of: 



PCA of root traits.

Plots and linear mixed model testing the links between rotated PC axes from PCA in 1. with the plant species richness gradient. 

Plots and linear mixed model testing the link between the plant species richness gradinent and the root trait gradients from 1. with the Shannon diversity and relative abundance of the soil fungal guilds: saprotrophs, plant pathogens and arbuscular mycorrhiza. 

Plots and linear mixed model testing the links between fine root biomass, fungal PLFA concentration, soil microbial biomass carbon and the fungal : bacterial ratio with plant species richness and the root trait gradients from 1. 

Supplementary Figures and Tables
DOI: 10.15468/dl.d9m3rr
title: Occurrence Download

description: A dataset containing 70692 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Laurus azorica (Seub.) Franco, Laurus nobilis L., Laurus novocanariensis Rivas Mart., Lousã, Fern.Prieto, E.Días, J.C.Costa & C.Aguiar)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 70692 records from 641 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002054-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.brhmt7
title: Occurrence Download

description: A dataset listing the 418330 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset's 418330 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002047-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13981437
title: Stacks of microCT Scans, Cell size, weight, volume and thallus size data supporting the paper 'Mechanical regulation of tissue flatness in Marchantia'

description: These data are the supporting elements to the following paper: 'Mechanical regulation of tissue flatness in Marchantia'




 .tif files contain MicroCT (MCT) scans of 16-day-old Marchantia polymorpha thalli. Three genotypes were analysed here: fer-2 mutant (from Mecchia et al., 2022), FER-OE #9 (proMpEF1::MpFERONIA-mCitrine trangenic line 9) from Mecchia et al., 2022), and Tak-1 (WT line). These plants were grown in 3 different media: Gamborgh B5 + vitamins and 0.6, 1.2 and 2.5% agar, and one stress condition consisting of the adjunction of a thin PDMS film at 4, to mimich external mechanical stimulus (only performed on thalli grown on 1.2% agar).

MicroCT scans were performed at the faculity of odontology of Université Paris-Cité (Plateform imagerie du vivant) with the technical support of Lotfi Slimani and Baptiste Casel. https://piv.u-paris.fr/micro-ct-haute-resolution/ 

All files already have embeded scales.

Each file name consists of a unique ID number in the following form:

P+<LETTER>+<NUMBER>-<CONDITION>

-LETTER: One letter = one imaging session

-NUMBER: Individual and Genotype: 33-40 -> Tak1; 200-207->fer-2; 41-49 -> FER-OE

-CONDITION : AGAR0.6/AGAR2.5/PDMS. Absence of condition indicates growth on standard medium (1.2% agar). PDMS indicated growth on standard medium and supplementation of a topping PDMS film at day 4)

 

-Volume data were calculated from MicroCT scans

-thallus projected surfaces were calculated from MicroCT scans

-Lambda curvature calculation.ipynb is suited for MorphographX mesh exported .txt files.
DOI: 10.5281/zenodo.13981438
title: Stacks of microCT Scans, Cell size, weight, volume and thallus size data supporting the paper 'Mechanical regulation of tissue flatness in Marchantia'

description: These data are the supporting elements to the following paper: 'Mechanical regulation of tissue flatness in Marchantia'




 .tif files contain MicroCT (MCT) scans of 16-day-old Marchantia polymorpha thalli. Three genotypes were analysed here: fer-2 mutant (from Mecchia et al., 2022), FER-OE #9 (proMpEF1::MpFERONIA-mCitrine trangenic line 9) from Mecchia et al., 2022), and Tak-1 (WT line). These plants were grown in 3 different media: Gamborgh B5 + vitamins and 0.6, 1.2 and 2.5% agar, and one stress condition consisting of the adjunction of a thin PDMS film at 4, to mimich external mechanical stimulus (only performed on thalli grown on 1.2% agar).

MicroCT scans were performed at the faculity of odontology of Université Paris-Cité (Plateform imagerie du vivant) with the technical support of Lotfi Slimani and Baptiste Casel. https://piv.u-paris.fr/micro-ct-haute-resolution/ 

All files already have embeded scales.

Each file name consists of a unique ID number in the following form:

P+<LETTER>+<NUMBER>-<CONDITION>

-LETTER: One letter = one imaging session

-NUMBER: Individual and Genotype: 33-40 -> Tak1; 200-207->fer-2; 41-49 -> FER-OE

-CONDITION : AGAR0.6/AGAR2.5/PDMS. Absence of condition indicates growth on standard medium (1.2% agar). PDMS indicated growth on standard medium and supplementation of a topping PDMS film at day 4)

 

-Volume data were calculated from MicroCT scans

-thallus projected surfaces were calculated from MicroCT scans

-Lambda curvature calculation.ipynb is suited for MorphographX mesh exported .txt files.
DOI: 10.15468/dl.tgcm3h
title: Occurrence Download

description: A dataset containing 683189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Alnus glutinosa (L.) Gaertn."
 ]
}

 The dataset includes 683189 records from 2375 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002050-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3yg4y
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium isatifolium Arv.-Touv."
 ]
}

 The dataset includes 36 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022730-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kukxwa
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phyllanthus urinaria L.",
 "Country is Colombia"
 ]
}

 The dataset includes 33 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013484-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tvgagb
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Festuca calva (Hack.) K.Richt.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018970-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-02.1946782/2362733
title: Data for EMSL Project 50076 from February 2020
DOI: 10.15468/dl.9v8akf
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hippolytia yunnanensis (Jeffrey) C.Shih"
 ]
}

 The dataset includes 55 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022724-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.weffry
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Dicliptera sparsiflora (Nees) Nees",
 "TaxonKey is Diapedium sparsiflorum (Nees) Kuntze"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013484-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-02.1946597/2362734
title: Data for EMSL Project 50076 from February 2020
DOI: 10.15468/dl.n2puva
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Barleria cyanea S.Moore"
 ]
}

 The dataset includes 18 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038056-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-02.1946374/2362735
title: Data for EMSL Project 50076 from February 2020
DOI: 10.15468/dl.4ae5zf
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Holcoglossum wangii Christenson"
 ]
}

 The dataset includes 26 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023574-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fgwmwi
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phyllanthus valleanus Croizat",
 "Country is Colombia"
 ]
}

 The dataset includes 64 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013485-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t5vv6x
title: Occurrence Download

description: A dataset containing 148 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Afrocayratia imerinensis (Baker) J.Wen & L.M.Lu"
 ]
}

 The dataset includes 148 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018880-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-02.1946681/2362736
title: Data for EMSL Project 50076 from February 2020
DOI: 10.15468/dl.fjrw9n
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Buddleja colvilei Hook.fil. & Thomson",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true"
 ]
}

 The dataset includes 28 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023585-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8tjx6n
title: Occurrence Download

description: A dataset containing 5693028 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year is greater than or equal to 1990",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 5693028 records from 1303 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013485-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-02.1946844/2362737
title: Data for EMSL Project 50076 from February 2020
DOI: 10.15468/dl.95uzqe
title: Occurrence Download

description: A dataset containing 2318 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Limnophila sessiliflora (Vahl) Blume"
 ]
}

 The dataset includes 2318 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007728-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.10umls
title: Occurrence Download

description: A dataset containing 9879 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bibliographic records of Angola mammals"
 ]
}

 The dataset includes 9879 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013487-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fqqn99
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Stenocercus boettgeri Boulenger, 1911"
 ]
}

 The dataset includes 23 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089746-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-04.1976642/2362738
title: Data for EMSL Project 50076 from April 2020
DOI: 10.15468/dl.zkbcpg
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astragalus trachyacanthos Fisch."
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038023-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-02.1946596/2362739
title: Data for EMSL Project 50076 from February 2020
DOI: 10.15468/dl.zzib02
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Halimium umbellatum Linnaeus, 1753",
 "Country is Spain",
 "DatasetKey is Institut Botanic de Barcelona (IBB, CSIC-Ajuntament de Barcelona), BC-Plantae"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013487-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tutef3
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Critoniopsis sodiroi (Hieron.) H.Rob."
 ]
}

 The dataset includes 144 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089750-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2n9hx2
title: Occurrence Download

description: A dataset containing 17067 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-72.9916 4.68228,-72.68786 4.68228,-72.68786 4.95528,-72.9916 4.95528,-72.9916 4.68228))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 17067 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018890-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.537q35
title: Occurrence Download

description: A dataset containing 3040134 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zenaida asiatica (Linnaeus, 1758)"
 ]
}

 The dataset includes 3040134 records from 211 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006483-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ppfc6f
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liparis hostifolia (Koidz.) Koidz. ex Nakai"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011113-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sg5abu
title: Occurrence Download

description: A dataset listing the 3485002 species recorded in GBIF matching the query:
{
 "OccurrenceStatus" : [
 "is Present"
 ]
}

 The dataset's 3485002 records were derived from 53709 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0162179-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.