cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.q3f9mp
title: Occurrence Download

description: A dataset containing 12744 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Moehringia lateriflora (L.) Fenzl"
 ]
}

 The dataset includes 12744 records from 329 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057404-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8304594
title: Modeling flexible protein structure with AlphaFold2 and cross-linking mass spectrometry

description: Ensembles of models predicted by AlphaFold for the proteins C3 (Complement component 3), luciferase and QBP (glutamine-binding periplasmic protein). Models interpolated between two conformations of C3, and luciferase are also included. This dataset is cited in the following paper: https://www.biorxiv.org/content/10.1101/2023.09.11.557128v1
DOI: 10.5281/zenodo.8304593
title: Modeling flexible protein structure with AlphaFold2 and cross-linking mass spectrometry

description: Ensembles of models predicted by AlphaFold for the proteins C3 (Complement component 3), luciferase and QBP (glutamine-binding periplasmic protein). Models interpolated between two conformations of C3, and luciferase are also included. This dataset is cited in the following paper: https://www.biorxiv.org/content/10.1101/2023.09.11.557128v1
DOI: 10.5281/zenodo.8337955
title: Summary statistics for "Variants in the TERT gene increase the occurrence of solar lentigines by modifying telomerase expression exclusively in the skin"

description: Publication: Deecke et al., Variants in the TERT gene increase the occurrence of solar lentigines by modifying telomerase expression exclusively in the skin, manuscript under revision<br> <br> Brief summary:<br> Solar lentigines (SL) are a characteristic of the aging skin. Their occurrence is likely determined by a combination of genetic variants and environmental factors such as chronic sun exposure. However, the genetic factors underlying SL formation remain largely unknown. A recently performed genome-wide association study (GWAS) of SL in two Chinese cohorts reported <em>TERT</em> and <em>OCA2</em> as novel genome-wide significant genetic loci for SL, while only the <em>TERT</em> locus could be validated in a cohort of European descent (Peng et al, 2023). The telomerase reverse transcriptase TERT is known to be involved in the process of maintenance of telomere lengths, but interestingly no causal relationship between telomere length and the SL GWAS results was observed by the investigators. In this study, we quantified the heritability of SL located on the back of the hands and performed a de novo GWAS in 1,137 elderly participants (aged 60 and more) of European descent from the Berlin Aging Study II. We confirmed <em>TERT</em> as the only genome-wide significant locus for SL (top SNP: rs2735940, p= 1.35E-16). In line with the previous Mendelian Randomization (MR) results by Peng et al., our updated MR using substantially larger datasets did not show a causal relationship between the occurrence of SL and telomere lengths measured in blood leukocytes. Importantly, rs2735940 modifies <em>TERT</em> expression in skin tissue (based on GTEx data), but not in any of the other GTEx tissues including blood. Furthermore, colocalization analyses suggested a shared causal effect of rs2735940 on SL occurrence and on <em>TERT</em> expression in skin but not in blood. Thus, we could show that variants in the <em>TERT</em> gene increase the occurrence of SL by modifying <em>TERT</em> expression exclusively in the skin, based on currently available GTEx data. This skin-specific effect was not reported previously and may provide the hitherto missing functional link for the occurrence of SLs via <em>TERT</em> expression and telomere length alterations.
DOI: 10.5281/zenodo.8337954
title: Summary statistics for "Variants in the TERT gene increase the occurrence of solar lentigines by modifying telomerase expression exclusively in the skin"

description: Publication: Deecke et al., Variants in the TERT gene increase the occurrence of solar lentigines by modifying telomerase expression exclusively in the skin, manuscript under revision<br> <br> Brief summary:<br> Solar lentigines (SL) are a characteristic of the aging skin. Their occurrence is likely determined by a combination of genetic variants and environmental factors such as chronic sun exposure. However, the genetic factors underlying SL formation remain largely unknown. A recently performed genome-wide association study (GWAS) of SL in two Chinese cohorts reported <em>TERT</em> and <em>OCA2</em> as novel genome-wide significant genetic loci for SL, while only the <em>TERT</em> locus could be validated in a cohort of European descent (Peng et al, 2023). The telomerase reverse transcriptase TERT is known to be involved in the process of maintenance of telomere lengths, but interestingly no causal relationship between telomere length and the SL GWAS results was observed by the investigators. In this study, we quantified the heritability of SL located on the back of the hands and performed a de novo GWAS in 1,137 elderly participants (aged 60 and more) of European descent from the Berlin Aging Study II. We confirmed <em>TERT</em> as the only genome-wide significant locus for SL (top SNP: rs2735940, p= 1.35E-16). In line with the previous Mendelian Randomization (MR) results by Peng et al., our updated MR using substantially larger datasets did not show a causal relationship between the occurrence of SL and telomere lengths measured in blood leukocytes. Importantly, rs2735940 modifies <em>TERT</em> expression in skin tissue (based on GTEx data), but not in any of the other GTEx tissues including blood. Furthermore, colocalization analyses suggested a shared causal effect of rs2735940 on SL occurrence and on <em>TERT</em> expression in skin but not in blood. Thus, we could show that variants in the <em>TERT</em> gene increase the occurrence of SL by modifying <em>TERT</em> expression exclusively in the skin, based on currently available GTEx data. This skin-specific effect was not reported previously and may provide the hitherto missing functional link for the occurrence of SLs via <em>TERT</em> expression and telomere length alterations.
DOI: 10.5281/zenodo.8143750
title: Cipher Machine Philips Usfa Miniflex (Inv. 2017-413)

description: This dataset represents the computed tomography image acquisition of a historical cipher machine from the collection of the Deutsches Museum. It is composed of CT reconstructed image stacks in the DICOM (.dcm) format.<br> It can be imported in any free or propietary CT-Viewer that supports the DICOM standard to generated 2D and 3D imaging.<br> If segmentations/ROIs are availabe, they are uploaded in a seperate image stacks and are a subset of the scanned cipher machine. object details:<br> name: Philips Usfa Miniflex<br> Inv.-No. of the Deutsches Museum: 2017-413 file object details, cipher unit:<br> file format: image/dcm<br> pixel spacing unit: mm<br> X pixel spacing: 0.181<br> Y pixel spacing: 0.181<br> Z pixel spacing: 0.181<br> grid size x: 1004<br> grid size y: 550<br> grid size z: 1455<br> color depth: 16Bit file object details, telephone coupler:<br> file format: image/dcm<br> pixel spacing unit: mm<br> X pixel spacing: 0.181<br> Y pixel spacing: 0.181<br> Z pixel spacing: 0.181<br> grid size x: 1603<br> grid size y: 550<br> grid size z: 1455<br> color depth: 16Bit ownership & image acquisition:<br> project: 3D-Cipher<br> collection: Deutsches Museum<br> IP holder: Deutsches Museum<br> license: Creative Commons BY-SA 4.0<br> scanning facility: Fraunhofer Development Center X-ray Technology EZRT/Fraunhofer IIS<br> scanning device: High Energy CT XXL-CT<br> Funding attribution: German Federal Ministry of Education and Research<br> acknowledgement: CryptoMuseum (as main source for informations about the cipher machines)
description: Funding: German Federal Ministry of Education and Research (BMBF), grant programme: eHeritage.
DOI: 10.5281/zenodo.8143749
title: Cipher Machine Philips Usfa Miniflex (Inv. 2017-413)

description: This dataset represents the computed tomography image acquisition of a historical cipher machine from the collection of the Deutsches Museum. It is composed of CT reconstructed image stacks in the DICOM (.dcm) format.<br> It can be imported in any free or propietary CT-Viewer that supports the DICOM standard to generated 2D and 3D imaging.<br> If segmentations/ROIs are availabe, they are uploaded in a seperate image stacks and are a subset of the scanned cipher machine. object details:<br> name: Philips Usfa Miniflex<br> Inv.-No. of the Deutsches Museum: 2017-413 file object details, cipher unit:<br> file format: image/dcm<br> pixel spacing unit: mm<br> X pixel spacing: 0.181<br> Y pixel spacing: 0.181<br> Z pixel spacing: 0.181<br> grid size x: 1004<br> grid size y: 550<br> grid size z: 1455<br> color depth: 16Bit file object details, telephone coupler:<br> file format: image/dcm<br> pixel spacing unit: mm<br> X pixel spacing: 0.181<br> Y pixel spacing: 0.181<br> Z pixel spacing: 0.181<br> grid size x: 1603<br> grid size y: 550<br> grid size z: 1455<br> color depth: 16Bit ownership & image acquisition:<br> project: 3D-Cipher<br> collection: Deutsches Museum<br> IP holder: Deutsches Museum<br> license: Creative Commons BY-SA 4.0<br> scanning facility: Fraunhofer Development Center X-ray Technology EZRT/Fraunhofer IIS<br> scanning device: High Energy CT XXL-CT<br> Funding attribution: German Federal Ministry of Education and Research<br> acknowledgement: CryptoMuseum (as main source for informations about the cipher machines)
description: Funding: German Federal Ministry of Education and Research (BMBF), grant programme: eHeritage.
DOI: 10.34740/kaggle/dsv/6458245
title: 2021 World Population (updated daily)
DOI: 10.34740/kaggle/dsv/6458241
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.17036/researchdata.aston.ac.uk.00000608
title: Supplementary material underpinning AfriCHI paper on Usability and Ux of Mobile Applications
DOI: 10.5519/qd.ixep9kdt
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (9520 records)
DOI: 10.5066/p9rpe8yx
title: Functional Gene Microarray Data From Cold-water Corals (Acanthogorgia spp., Desmophyllum dianthus, Desmophyllum pertusum, and Enallopsammia profunda) from the Atlantic Ocean off the Southeast Coast of the United States-Raw Data

description: The files in this data release (Kellogg and Voelschow, 2023) contain normalized microarray probe intensity values from GeoChip 5.0S microarrays referenced in the journal article entitled 'Functional gene composition and metabolic potential of deep-sea coral-associated microbial communities' by Pratte and others (2022). The GeoChip 5.0S microarrays, provided by Glomics Inc., contain 57,498 oligonucleotide probes that target 383 microbial (archaeal, bacterial, and fungal) genes and cover 151,797 coding sequences within the following metabolic categories: carbon, sulfur, and nitrogen cycling, as well as metal homeostasis, antibiotic resistance, and contaminant degradation. One microarray was run per coral (number of samples [n] = 11), using 400 nanograms (ng) of DNA extracted from the sample, plus a microarray run as a reagent blank (n = 1). The coral samples included one Acanthogorgia aspera, one Acanthogorgia spissa, three Desmophyllum dianthus, three Desmophyllum pertusum (formerly Lophelia pertusa) and three Enallopsammia profounda species. Corals were collected during two research cruises: the first in August 2018 and the second in April 2019, from six sites offshore of the southeastern coast of the United States in water depths ranging from 296-1567 meters (m). Coral samples were flash frozen in liquid nitrogen on the ship and stored at -80 degrees Celsius (C) until processed. Extraction of deoxyribose nucleic acid (DNA) from the coral samples and kit blank occurred on August 5, 2019, at the Coral Microbial Ecology Laboratory in St. Petersburg, Florida (FL) using a QIAGEN DNeasy PowerBiofilm kit. Then, DNA samples were sent to Glomics Inc. on August 6, 2019, for application of GeoChip 5.0S microarrays. Pratte, Z.A., Stewart, F. J., and Kellogg, C.A., 2023, Functional gene composition and metabolic potential of deep-sea coral-associated microbial communities: Coral Reefs, https://doi.org/10.1007/s00338-023-02409-0.
DOI: 10.5281/zenodo.8334660
title: Information theory-based direct causality measure to assess cardiac fibrillation dynamics

description: This repository contains the optical imaging data used in the article "Information theory-based direct causality measure to assess cardiac fibrillation dynamics"
DOI: 10.5281/zenodo.8334659
title: Information theory-based direct causality measure to assess cardiac fibrillation dynamics

description: This repository contains the optical imaging data used in the article "Information theory-based direct causality measure to assess cardiac fibrillation dynamics"
DOI: 10.2905/685949ff-56de-4646-a8df-844b5bb5f835
title: Harmonized European Union subnational crop statistics

description: A harmonized collection of subnational crop statistics on area, production, and yield, collected for the European Union from National Statistical Institutes and the Eurostat REGIO database.
DOI: 10.5281/zenodo.8337683
title: Images and 3D digitisations of Branding Heritage #4

description: These files are 3D digitisations and images of Branding Heritage
DOI: 10.5281/zenodo.8337684
title: Images and 3D digitisations of Branding Heritage #4

description: These files are 3D digitisations and images of Branding Heritage
DOI: 10.5281/zenodo.8338067
title: Original MAB Object Set for CASTAway M5 Submission Exploration

description: The zip file containts the ephemeris of the MAB objects used in the published works of: J.P. Sánchez, A. Gibbings, C. Snodgrass, N. Bowles, S. Green, Asteroid Belt Multiple Flyby Options for M-Class Missions, in: 67th International Astronautical Congress International Astronautical Federation, Guadalajara, Mexico, 26-30 September 2016. M. Di Carlo, M. Vasile, J. Dunlop, Low-thrust tour of the main belt asteroids, Advances in Space Research, 62 (2018) 2026-2045. Currently, a new manuscrip is being considered for publication, which also uses the same ephemeris set to comput asteroid tours in the Main Asteroid Belt. A. Bellome, J.P. Sánchez, J.C. García-Mateas, L. Felicetti and S. Kemble, Modified Dynamic programming for Asteroid Belt exploration, Acta Astronautica, Under Review. The files containt the ephemeris and and some matlab functions to retrieve position and velocity of the asteroids at a given epoch or time.
DOI: 10.15151/esrf-es-1313803052
title: Study of a telomere complex protection against chromosome fusions

description: Telomeres are nucleoprotein structures capping chromosomes extremities which they prevent native chromosome ends from being recognized and processed as double-stranded break ends by DNA damage repair pathways. Paradoxically, Ku protein binds telomere DNA ends and contributes to their protection. But Ku is also an essential actor of the NHEJ double strand break repair pathway and it can facilitate NHEJ-dependent fusions between telomeres. Our aim is to unravel the molecular mechanisms played by telomere factors Rap1, Rif2 and Sir4 to protect telomeres against the action of the DNA repair factor Ku. We have obtained a first structure of scKu-DNA-scRap1 complex using a glacios of Institut Pasteur and Cryosparc reconstruction, but to improve the resolution we have prepared new grids after purification of complex on a gel filtration column and we would like use the Titan Krios of ERSF to collect a new serial images.
DOI: 10.5281/zenodo.8338066
title: Original MAB Object Set for CASTAway M5 Submission Exploration

description: The zip file containts the ephemeris of the MAB objects used in the published works of: J.P. Sánchez, A. Gibbings, C. Snodgrass, N. Bowles, S. Green, Asteroid Belt Multiple Flyby Options for M-Class Missions, in: 67th International Astronautical Congress International Astronautical Federation, Guadalajara, Mexico, 26-30 September 2016. M. Di Carlo, M. Vasile, J. Dunlop, Low-thrust tour of the main belt asteroids, Advances in Space Research, 62 (2018) 2026-2045. Currently, a new manuscrip is being considered for publication, which also uses the same ephemeris set to comput asteroid tours in the Main Asteroid Belt. A. Bellome, J.P. Sánchez, J.C. García-Mateas, L. Felicetti and S. Kemble, Modified Dynamic programming for Asteroid Belt exploration, Acta Astronautica, Under Review. The files containt the ephemeris and and some matlab functions to retrieve position and velocity of the asteroids at a given epoch or time.
DOI: 10.15151/esrf-es-1299132120
title: The Iberian cryoEM community BAG

description: The Iberian cryoEM BAG is a large consortium (&gt; 30 groups) composed of Portuguese and Spanish groups working in biologically relevant problems including disease related metabolic enzymes, antibiotic resistance, DNA replication and DNA maintenance, protein synthesis, virus structure and mechanisms, and macromolecular complexes involved in the control of key cellular processes like protein folding and degradation.
DOI: 10.6084/m9.figshare.24126255
title: Brazilian Debt Renegotiation.xlsx

description: This database contains accounting data and data on debt renegotiation of publicly traded Brazilian companies. There is data for all quarters from 2010 to 2021
DOI: 10.6084/m9.figshare.24126255.v1
title: Brazilian Debt Renegotiation.xlsx

description: This database contains accounting data and data on debt renegotiation of publicly traded Brazilian companies. There is data for all quarters from 2010 to 2021
DOI: 10.5281/zenodo.8305181
title: Fractionation dataset Spannenburg

description: Dataset containing averages and standard deviations for several chemical and biological analyses performed during an on-site pilot testing at a water utility in the Netherlands.
DOI: 10.5281/zenodo.8305180
title: Fractionation dataset Spannenburg

description: Dataset containing averages and standard deviations for several chemical and biological analyses performed during an on-site pilot testing at a water utility in the Netherlands.
DOI: 10.5281/zenodo.8337506
title: Fractionation dataset Andijk

description: Dataset containing averages and standard deviations for several chemical and biological analyses performed during an on-site pilot testing at a water utility in the Netherlands.
DOI: 10.5281/zenodo.8337505
title: Fractionation dataset Andijk

description: Dataset containing averages and standard deviations for several chemical and biological analyses performed during an on-site pilot testing at a water utility in the Netherlands.
DOI: 10.5281/zenodo.8338076
title: Śaiva and Buddhist rhetoric in copperplate grants of the Eastern Deccan: textual analysis data

description: This is a textual analysis dataset derived from copperplate grants of the Eastern Cālukyas, Viṣṇukuṇḍis and Śrīmūla.<br> The data accompany the following forthcoming publication (title and date of publication subject to change):<br> Balogh, Dániel. 2024. ‘Can We Discern a Śaiva and a Buddhist Rhetoric in Royal Eulogies?’ In Śaiva-Buddhist Encounters in Early Medieval East India, edited by Florinda De Simini. Studies on the History of Śaivism. Naples: UniorPress.<br> Details of the methodology are presented in other publications by Balogh to appear in 2024 (forthcoming or in preparation when this dataset is released).<br> The parent of this dataset is available at https://zenodo.org/record/7900312<br> The present dataset has been extended by adding analytical data from Viṣṇukuṇḍi and Śrīmūla charters, but simultaneously reduced by discarding all data not pertaining to the issuing sovereigns.<br> This dataset, the underlying research and the relevant publication are results of the project DHARMA ‘The Domestication of “Hindu” Asceticism and the Religious Making of South and Southeast Asia’. This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement no 809994).
DOI: 10.6084/m9.figshare.24033489
title: Maps and analyses of environmental suitability and potential range expansion of the Eurasian beaver in Italy

description: Maps of environmental suitability, connectivity, and potential human-beaver conflicts, and tutorial to run Circuitscape 4.0 from R with customized functions, from the article "Environmental suitability and potential range expansion of the Eurasian beaver in Italy" by Mattia Falaschi, Gentile Francesco Ficetola, Andrea Viviano, Giuseppe Mazza, Emiliano Mori.<br>Description of the dataset:<br>"Beaver maps.zip" contains maps of (1) environmental suitability for Eurasian beaver in Europe, (2) connectivity for Eurasian beaver in Italy, and (3) areas of potential human-beaver conflicts in Italy. Additionally, a QGIS project showing these maps as presented in the article is included.<br>"Circuitscape_tutorial.zip" contains two R scripts and the data needed to run the connectivity model with Circuitscape. "Circuitsape from R - tutorial with beavers in Italy.R" is the actual tutorial script that can be used to run Circuitscape 4.0 from R using customized functions. "CS_functions_v1.1.R" contains the R functions used in the former script tu call Circuitscape 4.0 from R.
DOI: 10.5281/zenodo.7900312
title: The portrayal of underlings in Eastern Cālukya copper plates: textual analysis data

description: This is a textual analysis dataset derived from Eastern Cālukya copperplate grants.<br> The data accompany the following forthcoming publication (title and date of publication subject to change):<br> Balogh, Dániel (forthcoming 2023), 'The portrayal of underlings in Eastern Cālukya copper plates'. In: Self-Representation and Presentation of Others in Indic Epigraphical Writing, edited by Annette Schmiedchen and Dániel Balogh. Wiesbaden: Harrassowitz.<br> This publication describes the method sketched out on the introductory page of this dataset; a fuller account with more technical details is in preparation by Balogh and will be accompanied by further datasets.<br> This dataset, the underlying research and the relevant publication are results of the project DHARMA ‘The Domestication of “Hindu” Asceticism and the Religious Making of South and Southeast Asia’. This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement no 809994).
DOI: 10.5281/zenodo.7773745
title: Berlin State Library (2023). Named Entity Disambiguation French Database for the Named Entity Linking System of the Berlin State Library (SBB)

description: This database is a part of a BERT-based entity recognition and three-stage entity linking (EL) system. Its components consist of three models as well as three related databases, one of which is published here.
DOI: 10.5281/zenodo.7773746
title: Berlin State Library (2023). Named Entity Disambiguation French Database for the Named Entity Linking System of the Berlin State Library (SBB)

description: This database is a part of a BERT-based entity recognition and three-stage entity linking (EL) system. Its components consist of three models as well as three related databases, one of which is published here.
DOI: 10.5281/zenodo.7767403
title: Berlin State Library (2023). Named Entity Disambiguation German Database for the Named Entity Linking System of the Berlin State Library (SBB)

description: This database is a part of a BERT-based entity recognition and three-stage entity linking (EL) system. Its components consist of three models as well as three related databases, one of which is published here.