cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12218756.v1
title: Additional file 6 of Homoeolog expression bias and expression level dominance (ELD) in four tissues of natural allotetraploid Brassica napus

description: Additional file 6 : The perl script to identify orthologous gene pairs.
DOI: 10.6084/m9.figshare.12218744
title: Additional file 4 of Homoeolog expression bias and expression level dominance (ELD) in four tissues of natural allotetraploid Brassica napus

description: Additional file 4 : Table S2. Statistics of the KEGG enrichment in different comparison groups.
DOI: 10.6084/m9.figshare.12218738
title: Additional file 3 of Homoeolog expression bias and expression level dominance (ELD) in four tissues of natural allotetraploid Brassica napus

description: Additional file 3 : Table S1. Gene ontology (GO) classification of up−/down-regulated DEGs.
DOI: 10.6084/m9.figshare.12218738.v1
title: Additional file 3 of Homoeolog expression bias and expression level dominance (ELD) in four tissues of natural allotetraploid Brassica napus

description: Additional file 3 : Table S1. Gene ontology (GO) classification of up−/down-regulated DEGs.
DOI: 10.6084/m9.figshare.12218744.v1
title: Additional file 4 of Homoeolog expression bias and expression level dominance (ELD) in four tissues of natural allotetraploid Brassica napus

description: Additional file 4 : Table S2. Statistics of the KEGG enrichment in different comparison groups.
DOI: 10.6084/m9.figshare.12218684
title: DataAssimilation_0.56deg_ens64_eminox_Surface_Mean_20080408-20080430.nc

description: Data assimilation analysis of surface NOx emissions derived from multi-constituent satellite data assimilation
DOI: 10.6084/m9.figshare.12218684.v1
title: DataAssimilation_0.56deg_ens64_eminox_Surface_Mean_20080408-20080430.nc

description: Data assimilation analysis of surface NOx emissions derived from multi-constituent satellite data assimilation
DOI: 10.6084/m9.figshare.12218666
title: Additional file 1 of EM-mosaic detects mosaic point mutations that contribute to congenital heart disease

description: Contains Supplemental Tables S1-S16.
DOI: 10.6084/m9.figshare.12218666.v1
title: Additional file 1 of EM-mosaic detects mosaic point mutations that contribute to congenital heart disease

description: Contains Supplemental Tables S1-S16.
DOI: 10.6084/m9.figshare.12218639
title: DataAssimilation_0.56deg_ens64_emico_Surface_Mean_20080408-20080430.nc

description: Data assimilation analysis of surface CO emissions derived from multi-constituent satellite data assimilation
DOI: 10.6084/m9.figshare.12218621
title: Suppl.Figure22

description: BGRDs
DOI: 10.6084/m9.figshare.12218639.v1
title: DataAssimilation_0.56deg_ens64_emico_Surface_Mean_20080408-20080430.nc

description: Data assimilation analysis of surface CO emissions derived from multi-constituent satellite data assimilation
DOI: 10.6084/m9.figshare.12218615
title: Suppl.Figure20

description: BGRDs
DOI: 10.6084/m9.figshare.12218618
title: Suppl.Figure21

description: BGRDs
DOI: 10.6084/m9.figshare.12218624
title: Suppl.Figure23

description: BGRDs
DOI: 10.6084/m9.figshare.12218615.v1
title: Suppl.Figure20

description: BGRDs
DOI: 10.6084/m9.figshare.12218618.v1
title: Suppl.Figure21

description: BGRDs
DOI: 10.6084/m9.figshare.12218621.v1
title: Suppl.Figure22

description: BGRDs
DOI: 10.6084/m9.figshare.12218624.v1
title: Suppl.Figure23

description: BGRDs
DOI: 10.6084/m9.figshare.12218588
title: Suppl.Figure16

description: BGRDs, tumor
DOI: 10.6084/m9.figshare.12218627.v1
title: Suppl.Figure24

description: BGRDs, tumor<br>
DOI: 10.6084/m9.figshare.12218588.v1
title: Suppl.Figure16

description: BGRDs, tumor
DOI: 10.6084/m9.figshare.12218570.v1
title: Suppl.Figure10

description: BGRDs
DOI: 10.6084/m9.figshare.12218519
title: ModelSimulation_0.56deg_o3_Modellevel_2hourly_20080629-20080721.nc

description: Model simulation output of ozone concentrations
DOI: 10.6084/m9.figshare.12218519.v1
title: ModelSimulation_0.56deg_o3_Modellevel_2hourly_20080629-20080721.nc

description: Model simulation output of ozone concentrations
DOI: 10.6084/m9.figshare.12218525.v1
title: Epigenetics_processing

description: see README.md
DOI: 10.6084/m9.figshare.12218528.v1
title: Gene_annotation

description: see README.md
DOI: 10.5281/zenodo.4000207
title: Riparian Microclimates

description: <b>Description: </b>Microclimate at SAFE and LOMBOK rivers<b>Project: </b>This dataset was collected as part of the following SAFE research project: <b>Do riparian buffer strips stabilise environmental conditions, conserve biodiversity, and maintain ecosystem functions in oil palm-dominated landscapes?</b><b>Funding: </b>These data were collected as part of research funded by: NERC (Human Modified Tropical Forests Programme, NE/K016407/1, http://lombok.nerc-hmtf.info/; http://nerc-hmtf.info/)British Council and Malaysian Industry ­Government Group for High Technology (Newton-­Ungku Omar Fund, 216433953.0, http://www.newtonfund.ac.uk/about/about-partner-countries/malaysia/)This dataset is released under the CC-BY 4.0 licence, requiring that you cite the dataset in any outputs, but has the additional condition that you acknowledge the contribution of these funders in any outputs.<b>Permits: </b>These data were collected under permit from the following authorities:SaBC (Research licence JKM/MBS.1000-2/2JLD.5(13))<b>XML metadata: </b>GEMINI compliant metadata for this dataset is available here<b>Files: </b>This consists of 1 file: SAFE_LOMBOK_Rivers_Microclimate_JW.xlsx<b>SAFE_LOMBOK_Rivers_Microclimate_JW.xlsx</b>This file contains dataset metadata and 1 data tables:<b>Microclimate at SAFE and LOMBOK rivers</b> (described in worksheet Microclimate)Description: Microclimate at SAFE and LOMBOK rivers as recorded by dataloggers. Number of fields: 9Number of data rows: 198Fields: <b>Site</b>: SAFE & LOMBOK Datalogger Points (Field type: location)<b>Position</b>: Position of datalogger within the sampling transect where buffer5-45m deisgnates distance from river within forest, bufferedge is within 10m of the edge of a riparian buffer (in forest) and op5-45m designate distance from river in ROP transects or distance from buffer edge in RR or SJI transects (Field type: categorical)<b>Date</b>: Date datalogger deployed (Field type: date)<b>maxTemp</b>: Mean daily maximum temperature (Field type: numeric)<b>meanTemp</b>: Mean daily mean temperature (Field type: numeric)<b>maxVPD</b>: Mean daily max VPD (Field type: numeric)<b>meanVPD</b>: mean daily mean VPD (Field type: numeric)<b>dist_edge</b>: Distance from datalogger to riparian buffer edge (Field type: numeric)<b>days_recorded</b>: Number of days the datalogger recorded for (Field type: numeric)<b>Date range: </b>2016-12-06 to 2018-05-24<b>Latitudinal extent: </b>4.3000 to 4.8100<b>Longitudinal extent: </b>117.1500 to 117.7000
DOI: 10.5281/zenodo.4000206
title: Riparian Microclimates

description: <b>Description: </b>Microclimate at SAFE and LOMBOK rivers<b>Project: </b>This dataset was collected as part of the following SAFE research project: <b>Do riparian buffer strips stabilise environmental conditions, conserve biodiversity, and maintain ecosystem functions in oil palm-dominated landscapes?</b><b>Funding: </b>These data were collected as part of research funded by: NERC (Human Modified Tropical Forests Programme, NE/K016407/1, http://lombok.nerc-hmtf.info/; http://nerc-hmtf.info/)British Council and Malaysian Industry ­Government Group for High Technology (Newton-­Ungku Omar Fund, 216433953.0, http://www.newtonfund.ac.uk/about/about-partner-countries/malaysia/)This dataset is released under the CC-BY 4.0 licence, requiring that you cite the dataset in any outputs, but has the additional condition that you acknowledge the contribution of these funders in any outputs.<b>Permits: </b>These data were collected under permit from the following authorities:SaBC (Research licence JKM/MBS.1000-2/2JLD.5(13))<b>XML metadata: </b>GEMINI compliant metadata for this dataset is available here<b>Files: </b>This consists of 1 file: SAFE_LOMBOK_Rivers_Microclimate_JW.xlsx<b>SAFE_LOMBOK_Rivers_Microclimate_JW.xlsx</b>This file contains dataset metadata and 1 data tables:<b>Microclimate at SAFE and LOMBOK rivers</b> (described in worksheet Microclimate)Description: Microclimate at SAFE and LOMBOK rivers as recorded by dataloggers. Number of fields: 9Number of data rows: 198Fields: <b>Site</b>: SAFE & LOMBOK Datalogger Points (Field type: location)<b>Position</b>: Position of datalogger within the sampling transect where buffer5-45m deisgnates distance from river within forest, bufferedge is within 10m of the edge of a riparian buffer (in forest) and op5-45m designate distance from river in ROP transects or distance from buffer edge in RR or SJI transects (Field type: categorical)<b>Date</b>: Date datalogger deployed (Field type: date)<b>maxTemp</b>: Mean daily maximum temperature (Field type: numeric)<b>meanTemp</b>: Mean daily mean temperature (Field type: numeric)<b>maxVPD</b>: Mean daily max VPD (Field type: numeric)<b>meanVPD</b>: mean daily mean VPD (Field type: numeric)<b>dist_edge</b>: Distance from datalogger to riparian buffer edge (Field type: numeric)<b>days_recorded</b>: Number of days the datalogger recorded for (Field type: numeric)<b>Date range: </b>2016-12-06 to 2018-05-24<b>Latitudinal extent: </b>4.3000 to 4.8100<b>Longitudinal extent: </b>117.1500 to 117.7000
DOI: 10.6084/m9.figshare.12218465
title: E-Supplement-Mineral-Composition.xlsx

description: mantle peridotite mineral composition
DOI: 10.6084/m9.figshare.12218465.v1
title: E-Supplement-Mineral-Composition.xlsx

description: mantle peridotite mineral composition
DOI: 10.6084/m9.figshare.12218453
title: mudik_20April.xlsx

description: The dataset contains the output raw data from Qualtrics software.
DOI: 10.6084/m9.figshare.12218441
title: Detrimental effect of zwitterionic buffers on lysosomal homeostasis in cell lines and iPSC-derived neurons

description: Images of lysotracker fluorescence (with Hoechst counterstaining) analysed by lysosomal area measurement in ImageJ and Lysotracker fluorescence analysis by fluorescence plate reader in CHO cells (control CHO H1 and also Niemann-Pick C disease CHO M12) grown in different concentrations of HEPES buffer (over short and long term) and different zwitterionic buffers. Further data in iPSC-neurons grown with and without HEPES for 1 week with images of lysotracker fluorescence (and phase contrast) and analysis of lysosomal Ca2+ levels by Fura 2 in neurons (grown in media either with and without HEPES) treated with ionomycin and then GPN to specifically release lysosomal Ca2+.
DOI: 10.6084/m9.figshare.12218441.v1
title: Detrimental effect of zwitterionic buffers on lysosomal homeostasis in cell lines and iPSC-derived neurons

description: Images of lysotracker fluorescence (with Hoechst counterstaining) analysed by lysosomal area measurement in ImageJ and Lysotracker fluorescence analysis by fluorescence plate reader in CHO cells (control CHO H1 and also Niemann-Pick C disease CHO M12) grown in different concentrations of HEPES buffer (over short and long term) and different zwitterionic buffers. Further data in iPSC-neurons grown with and without HEPES for 1 week with images of lysotracker fluorescence (and phase contrast) and analysis of lysosomal Ca2+ levels by Fura 2 in neurons (grown in media either with and without HEPES) treated with ionomycin and then GPN to specifically release lysosomal Ca2+.
DOI: 10.6084/m9.figshare.12218060
title: Petrogenesis of the meta-igneous rocks of the Sierra El Arco and coeval magmatic rocks in Baja California: Middle Jurassic-Early Cretaceous (166-140 Ma) island arc magmatism of NW México

description: The Jurassic-Early Cretaceous Vizcaíno and Alisitos terranes are juxtaposed in the central part of the Baja California Peninsula, México. The southernmost outcrops of the Alisitos terrane are located in the Sierra El Arco, which consists of greenschist-facies meta-igneous rocks. Further east in the Calmallí area, amphibolite and paragneiss dominate. The meta-igneous rocks constitute a magmatic system ranging from peridotite to granodiorite, with associated basaltic to dacitic volcanic rocks. The suite displays negative εSr<sub>t</sub> (average −8.4, n = 23) and positive εNd<sub>t</sub> values (average +5.8, n = 23), suggesting mantle-derived melts with no discernible assimilation of continental crustal material. Geochemical and isotopic data of the amphibolite suggests a protolith similar to the meta-igneous rocks. Paragneiss samples display εSr<sub>t</sub> of +166 and εNd<sub>t</sub> around −7, with Nd crustal residence ages of 1.5 Ga. The isotopic data of the paragneiss suggest provenance from continental sources. Similar to Triassic-Middle Jurassic metasedimentary rocks from the Baja California Peninsula and western México. Middle Jurassic magmatism on Cedros Island (Vizcaíno terrane) and the Sierra El Arco (Alisitos terrane) define an εSr<sub>t</sub> vs. εNd<sub>t</sub> evolutionary trend that is mostly within the mantle array, suggesting a common origin within the same island arc subduction setting. Jurassic magmatism of continental affinity, defined by positive εSr<sub>t</sub> (average +39, n = 15) and negative εNd<sub>t</sub> values (average −4.2, n = 15), is widespread in the Baja California Peninsula and western México. Our Sr-Nd isotope mixing curves suggest that the assimilation of Late Triassic metasedimentary rocks or a lower crust could explain the isotopic composition of the continental affinity Jurassic magmatism.
DOI: 10.6084/m9.figshare.12218060.v1
title: Petrogenesis of the meta-igneous rocks of the Sierra El Arco and coeval magmatic rocks in Baja California: Middle Jurassic-Early Cretaceous (166-140 Ma) island arc magmatism of NW México

description: The Jurassic-Early Cretaceous Vizcaíno and Alisitos terranes are juxtaposed in the central part of the Baja California Peninsula, México. The southernmost outcrops of the Alisitos terrane are located in the Sierra El Arco, which consists of greenschist-facies meta-igneous rocks. Further east in the Calmallí area, amphibolite and paragneiss dominate. The meta-igneous rocks constitute a magmatic system ranging from peridotite to granodiorite, with associated basaltic to dacitic volcanic rocks. The suite displays negative εSr<sub>t</sub> (average −8.4, n = 23) and positive εNd<sub>t</sub> values (average +5.8, n = 23), suggesting mantle-derived melts with no discernible assimilation of continental crustal material. Geochemical and isotopic data of the amphibolite suggests a protolith similar to the meta-igneous rocks. Paragneiss samples display εSr<sub>t</sub> of +166 and εNd<sub>t</sub> around −7, with Nd crustal residence ages of 1.5 Ga. The isotopic data of the paragneiss suggest provenance from continental sources. Similar to Triassic-Middle Jurassic metasedimentary rocks from the Baja California Peninsula and western México. Middle Jurassic magmatism on Cedros Island (Vizcaíno terrane) and the Sierra El Arco (Alisitos terrane) define an εSr<sub>t</sub> vs. εNd<sub>t</sub> evolutionary trend that is mostly within the mantle array, suggesting a common origin within the same island arc subduction setting. Jurassic magmatism of continental affinity, defined by positive εSr<sub>t</sub> (average +39, n = 15) and negative εNd<sub>t</sub> values (average −4.2, n = 15), is widespread in the Baja California Peninsula and western México. Our Sr-Nd isotope mixing curves suggest that the assimilation of Late Triassic metasedimentary rocks or a lower crust could explain the isotopic composition of the continental affinity Jurassic magmatism.
DOI: 10.6084/m9.figshare.12217961
title: Anvi'o split profiles for each non-redundant MAG (Part II)

description: Anvi'o split profiles for each non-redundant MAG recovered in Shaiber et al. study.<br>For Part I, see this: doi:10.6084/m9.figshare.12217805
DOI: 10.6084/m9.figshare.12217805
title: Anvi'o split profiles for each non-redundant MAG (Part I)

description: Anvi'o split profiles for each non-redundant MAG recovered in Shaiber et al. study.<br>For Part II, see this: doi:10.6084/m9.figshare.12217961<br>
DOI: 10.6084/m9.figshare.12217811
title: The TM7 Metapangenome

description: The oral TM7 metapangenome in Shaiber et al.<br>You can visualize it by running the following command on a computer that runs anvi'o v6.2 or later:<br>anvi-display-pan -p TM7-PAN.db -g TM7-GENOMES.db<br>
DOI: 10.6084/m9.figshare.12217802
title: Anvi'o profiles per individual

description: These anvi'o merged profile databases describe the co-assembly of each individual in the Shaiber et al. study.<br>They lend themselves to visualization of co-assembled contigs and their coverages across metagenomes, and reconstruction of genomes from these metagenomes.
DOI: 10.6084/m9.figshare.12217799
title: Co-assembly of oral metagenomes per individual

description: Metagenomic co-assembly of each individual in Shaiber et al.
DOI: 10.6084/m9.figshare.12217790
title: Covid-19 in the European press

description: The Covid-19 pandemic has affected all sectors; from economy to culture, education and the critical issue of health.<br>The treatment of a country's press can be a good indicator of the concerns and interests of its citizens. <br><br>This data is extracted from the Factiva database from March 13 2020 to April 14. The data consists of the number of documents published during the indicated period of time from different perspectives: media, subject, industry, region and author.T
DOI: 10.6084/m9.figshare.12217751
title: mc_010.tar.gz

description: 10/10 multicolor CAPTCHA data.
DOI: 10.6084/m9.figshare.12217790.v2
title: Covid-19 in the European press

description: The Covid-19 pandemic has affected all sectors; from economy to culture, education and the critical issue of health.<br>The treatment of a country's press can be a good indicator of the concerns and interests of its citizens. <br><br>This data is extracted from the Factiva database from March 13 2020 to April 14. The data consists of the number of documents published during the indicated period of time from different perspectives: media, subject, industry, region and author.T
DOI: 10.6084/m9.figshare.12217697
title: Global Protected Areas (Points)

description: This is a global database of protected areas, includes some Ramsar sites, created by the World Wildlife Fund.
DOI: 10.6084/m9.figshare.12217751.v1
title: mc_010.tar.gz

description: 10/10 multicolor CAPTCHA data.
DOI: 10.6084/m9.figshare.12217790.v1
title: Covid-19 in the European press

description: The Covid-19 pandemic has affected all sectors; from economy to culture, education and the critical issue of health.<br>The treatment of a country's press can be a good indicator of the concerns and interests of its citizens. <br><br>This data is extracted from the Factiva database from March 13 2020 to April 14. The data consists of the number of documents published during the indicated period of time from different perspectives: media, subject, industry, region and author.T
DOI: 10.6084/m9.figshare.12217697.v2
title: Global Protected Areas (Points)

description: This is a global database of protected areas, includes some Ramsar sites, created by the World Wildlife Fund.
DOI: 10.6084/m9.figshare.12217679
title: Ramsar Sites

description: This data set includes the centroids and boundary shapefiles for global Ramsar sites.
DOI: 10.6084/m9.figshare.12217697.v1
title: Global Protected Areas (Points)

description: This is a global database of protected areas, includes some Ramsar sites, created by the World Wildlife Fund.
DOI: 10.6084/m9.figshare.12217694.v1
title: Bayesian Island Biogeography model reveals the short and long-term impacts of urbanization on bird communities

description: The dateset contains necessary files to replicate the analyses in the manuscript (currently submitted for publication)
DOI: 10.6084/m9.figshare.12217682.v1
title: QIIME input files

description: QIIME2 combined files for the 35 16S rRNA gene amplicon sequencing datasets included in the Plastisphere metaanalysis. These can be used to either re-run the analyses performed or to add additional studies to. Full details on the use of these files and what they contain is at: https://github.com/R-Wright-1/Plastisphere-MetaAnalysis
DOI: 10.6084/m9.figshare.12217679.v1
title: Ramsar Sites

description: This data set includes the centroids and boundary shapefiles for global Ramsar sites.
DOI: 10.6084/m9.figshare.12216467
title: Future Hydroelectric Reservoirs and Dams

description: This data set combines shapefiles and metadata files for global distribution of proposed dams.
DOI: 10.6084/m9.figshare.12216467.v1
title: Future Hydroelectric Reservoirs and Dams

description: This data set combines shapefiles and metadata files for global distribution of proposed dams.
DOI: 10.6084/m9.figshare.12214934
title: Supplementary Table 1. Primer sequences for PCR

description: Primer sequences for PCR
DOI: 10.6084/m9.figshare.12214934.v1
title: Supplementary Table 1. Primer sequences for PCR

description: Primer sequences for PCR
DOI: 10.6084/m9.figshare.12214769
title: Protein Ligand Binding Assay

description: MD simulations of a protein ligand binding assay, provided by Acellera. These simulations are used in https://software.acellera.com/docs/latest/htmd/tutorials/ligand-binding-analysis.html<br><br><br>Doerr, S.; Harvey, M. J.; Noé, F.; De Fabritiis, G. HTMD: High-Throughput Molecular Dynamics for Molecular Discovery. J. Chem. Theory Comput. 2016, 12, 1845–1852<br>
DOI: 10.6084/m9.figshare.12214769.v1
title: Protein Ligand Binding Assay

description: MD simulations of a protein ligand binding assay, provided by Acellera. These simulations are used in https://software.acellera.com/docs/latest/htmd/tutorials/ligand-binding-analysis.html<br><br><br>Doerr, S.; Harvey, M. J.; Noé, F.; De Fabritiis, G. HTMD: High-Throughput Molecular Dynamics for Molecular Discovery. J. Chem. Theory Comput. 2016, 12, 1845–1852<br>
DOI: 10.6084/m9.figshare.12214748
title: BokoretalSU.xlsx

description: gene x stress interaction data on suicide.<br>
DOI: 10.6084/m9.figshare.12214391
title: Data from: Effects of nonnative species on the stability of riverine fish communities

description: The FishData.csv table provides riverine fish community abundance data associated with the article Eros et al. (2020) Effects of nonnative species on the stability of riverine fish communities. Ecography 43: 1-11. doi: 10.1111/ecog.04985. Metadata are described in Read_me.txt file.<br>
DOI: 10.6084/m9.figshare.12214364
title: Source data for paper entitled "Low-frequency ultrasound-mediated cytokine transfection enhances T cell recruitment at local and distant tumor sites"

description: This is the source data that was used to generate the Figures and Supplementary Figures in the PNAS paper entitled "Low-frequency ultrasound-mediated cytokine transfection enhances T cell recruitment at local and distant tumor sites".
DOI: 10.6084/m9.figshare.12214346
title: Global Distribution of Whistler Mode Waves in Jovian Inner Magnetosphere

description: This is the dataset used to produce figures for the paper submitted to Geophysical Research Letters with the title of "Global Distribution of Whistler Mode Waves in Jovian Inner Magnetosphere".
DOI: 10.6084/m9.figshare.12214349
title: Main manuscript - EEG data: stability right hand

description: EEG data related to "Large EEG amplitude effects are highly similar across Necker cube, smiley, and abstract stimuli". This item represents the data from all participants responding with the right hand the "stability" response. For more information read the manual: https://doi.org/10.6084/m9.figshare.12214199.v1
DOI: 10.6084/m9.figshare.12214343
title: Main Manuscript - EEG data: stability - left hand

description: EEG data related to "Large EEG amplitude effects are highly similar across Necker cube, smiley, and abstract stimuli". This item represents the data from all participants responding with the left hand the "stability" response. For more information read the manual: https://doi.org/10.6084/m9.figshare.12214199.v1