cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14248692.v1
title: A new potentially Endangered species of <i>Megophrys</i> (Amphibia: Megophryidae) from Mount Ky Quan San, north-west Vietnam

description: The genus <i>Megophrys</i> is known to harbour morphological cryptic species diversity. During field work on Vietnam’s third highest peak, Mount Ky Quan San, north-west Vietnam, we collected specimens of a new species of <i>Megophrys</i> at two locations more than 2000 m above sea level (asl). Phylogenetic analyses using mitochondrial markers place the new species within the subgenus <i>Panophrys</i>, a primarily Chinese radiation within the genus <i>Megophrys</i>. We describe the species based on an all-male type series and distinguish it from all other <i>Megophrys</i> species from mainland Southeast Asia, north of the Isthmus of Kra and nearby provinces of China (Yunnan, Guangxi and Guizhou) based on morphological, molecular and bioacoustic data. The new species is inferred to form a clade along with <i>M. hoanglienensis</i> and <i>M. fansipanensis</i>; it is syntopic with the former but has a non-overlapping range with the latter. Uncorrected <i>p</i> distances for the 16S rDNA and CO1 genes between the new species and closest relatives exceed values observed between other closely related species in the <i>Panophrys</i> subgenus. The new species is most similar to <i>M. fansipanensis</i> in terms of morphology, and several call parameters also overlap with this species; however, these two species call at different times of year. This is the fourth likely range-restricted and Endangered <i>Megophrys</i> species described from the Hoang Lien Range since 2017, and this discovery further highlights the significance of the Hoang Lien Range for Vietnam’s amphibian diversity. http://zoobank.org/NomenclaturalActs/69340DD7-B21E-4DD0-836F-6741878013BB
DOI: 10.6084/m9.figshare.14355987.v1
title: Breeding ecology of Eurasian bullfinches <i>Pyrrhula pyrrhula</i> in an Iberian hedgerow habitat

description: The breeding ecology of the Iberian subspecies of the Eurasian bullfinch, <i>Pyrrhula pyrrhula iberiae</i>, is addressed for the first time. The studied population occupied a hedgerow habitat in northwestern Spain. Individuals directly watched in the study area and details of these sightings were recorded over a six-year period, and a total of 56 nests were monitored. The earliest date of nest building was within 11–30 April for all years. Fledglings were recorded leaving the nest during all the ten-day periods from the end of May to mid-August. Nest attendance, from the early building stage to when nestlings were ready to leave the nest, lasted approximately 36 days. The overall mean clutch size was 4.56 eggs. Clutch size decreased significantly at the end of the breeding season. For all egg traits, the minimum values for standard deviation were obtained in the intra-clutch analysis, and egg length was more variable than width. Nesting success increased progressively from April–May to June–July and August. The main proximate cause of nest failure was egg desertion/predation, followed by nest desertion during nest building and nestling desertion/predation. Mammals were the main agents in nests where the probable predator could be identified. Approximately half of the eggs became fledglings leaving the nest, no significant seasonal differences being observed for this parameter. In August, the ratio of juveniles to adults was 2.5–4.1, juveniles representing approximately 70–80% of the individuals seen and identified that month. The absence of significant interannual variation in important reproductive parameters could have been due to lack of interannual variation in the availability of food resources. Compared to other subspecies, mean clutch size of Iberian bullfinches is the smallest recorded in the western Palearctic, and they showed an earlier start to the breeding season and shorter mean egg length than North European and Russian populations.
DOI: 10.6084/m9.figshare.14661174
title: 1000 random numbers in range of 0 to 100

description: This JSON file contais 1000 random numbers in a range of 0 to 100 stored in a python list format.
DOI: 10.6084/m9.figshare.14661201.v1
title: 1000 random numbers in a range from 0 to 1000

description: This JSON file contais 1000 random numbers in a range of 0 to 100 stored in a python list format.
DOI: 10.6084/m9.figshare.14661201
title: 1000 random numbers in a range from 0 to 1000

description: This JSON file contais 1000 random numbers in a range of 0 to 100 stored in a python list format.
DOI: 10.17632/cw24t44fgd.2
title: Data for: Housing Liquidity and Long-Term Care Insurance Demand: a Quantitative Evaluation

description: Replication file for the paper "Housing Liquidity and Long-Term Care Insurance Demand: a Quantitative Evaluation" by Bertrand Achou.
DOI: 10.5281/zenodo.4361762
title: kgbench: amplus

description: Message passing models for machine learning on knowledge graphs offer a promising direction for interpretable machine learning on relational and multimodal data. Until now, however, progress in this area is difficult to gauge. This is primarily due to a limited number of datasets with (a) a high enough number of labeled nodes in the test set for precise measurement of performance, and (b) a rich enough variety of of multimodal information to learn from. Here, we introduce a set of new benchmark tasks for node classification and node regression on knowledge graphs. We focus primarily on node labeling tasks, since this setting cannot be solved purely by node embedding, requiring the model to pool information from several steps away in the graph. However, each dataset may also be used for link prediction. For each dataset, we provide test and validation sets of at least 1000 instances, with some containing more than 10\;000 instances. Each task can be performed in a purely relational manner, to evaluate the performance of a relational graph model in isolation, or with mutimodal information, to evaluate the performance of multimodal relational graph models. All datasets are packaged in a CSV format that is easily consumable in any machine learning environment, together with the original source data in RDF and pre-processing code for full provenance. We provide code for loading the data into \texttt{numpy} and \texttt{pytorch}. We compute performance for several baseline models.
DOI: 10.5281/zenodo.4361761
title: kgbench: amplus

description: Message passing models for machine learning on knowledge graphs offer a promising direction for interpretable machine learning on relational and multimodal data. Until now, however, progress in this area is difficult to gauge. This is primarily due to a limited number of datasets with (a) a high enough number of labeled nodes in the test set for precise measurement of performance, and (b) a rich enough variety of of multimodal information to learn from. Here, we introduce a set of new benchmark tasks for node classification and node regression on knowledge graphs. We focus primarily on node labeling tasks, since this setting cannot be solved purely by node embedding, requiring the model to pool information from several steps away in the graph. However, each dataset may also be used for link prediction. For each dataset, we provide test and validation sets of at least 1000 instances, with some containing more than 10\;000 instances. Each task can be performed in a purely relational manner, to evaluate the performance of a relational graph model in isolation, or with mutimodal information, to evaluate the performance of multimodal relational graph models. All datasets are packaged in a CSV format that is easily consumable in any machine learning environment, together with the original source data in RDF and pre-processing code for full provenance. We provide code for loading the data into \texttt{numpy} and \texttt{pytorch}. We compute performance for several baseline models.
DOI: 10.5281/zenodo.4781376
title: Phenotypic data and validation data for GWAS in Norway spruce study

description: Genome-wide association studies (GWAS) identify loci underlying the variation of complex traits. These deposited data are used for GWAS in Norway spruce.
DOI: 10.5281/zenodo.4781375
title: Phenotypic data and validation data for GWAS in Norway spruce study

description: Genome-wide association studies (GWAS) identify loci underlying the variation of complex traits. These deposited data are used for GWAS in Norway spruce.
DOI: 10.6084/m9.figshare.14661234
title: BMC phylogenomic dataset of 53 conserved proteins

description: A revised version of the dataset used for phylogenomic reconstruction of Holomycota by Capella-Gutiérrez et al. (2012).
DOI: 10.6084/m9.figshare.14626509
title: test

description: this is a test
DOI: 10.6084/m9.figshare.14626509.v1
title: test

description: this is a test
DOI: 10.34808/q067-w618
title: Test of the antimicrobial properties against Staphylococcus aureus  of the innovative CS-2a preservative.

description: The dataset contains the results of a single series of determinations of the antimicrobial properties against Staphylococcus aureus of the innovative CS-2 a preservative in the solution of model fluids.During the test, the infected product is inoculated (on Baird-Parker Agar) at specified intervals (0 min.  and after 1 day-24 h of incubation ). This allows the degree of microbial reduction caused by the presence of the preservative in the sample to be determined.After the specified incubation period (48 h 37 ° C), plates containing, if possible, less than 300 colonies in a dilution series were selected for counting.
DOI: 10.34808/re1a-5r06
title: Determination of the total number of microorganisms in a model food product preserved by CS-2a and CS-2b.

description: The dataset contains the results of determination of the total number of microorganisms in a model food product after the use of the innovative preservatives: CS-2a  and CS-2b and control (K) after seven days of refrigerated storage of the product. The test was performed using the surface inoculation method.
Results:
CS-2a - total number of microorganisms; at the last dilution: K - 27 colonies, CS - 5 coloniesCS-2b - total number of microorganisms; at the last dilution: K - 72 colonies, CS - 12 colonies
DOI: 10.6084/m9.figshare.14595261.v1
title: 2021GL094336 data

description: data of 2021GL094336
DOI: 10.34808/2skv-2p31
title: Rate performance of mixture (NH4)2V6O16 and (NH4)2V10O25·8H2O as cathode material in Li-ion batteries

description: The DataSet contains the galvanostatic charge/discharge curves of the ammonium vanadate nanostructures obtained by the hydrothermal method without initial pressure (mixture (NH4)2V6O16 and (NH4)2V10O25·8H2O). The battery tests of the samples were performed using the ATLAS 0961 MBI multichannel battery testing system with different current densities in the voltage range between 2.0 V and 4.0 V vs. Li/Li+ 
These results are part of a project defined in Electrochimica Acta journal (10.1016/j.electacta.2020.135919). In this paper, the information about samples and synthesis details are reported.
DOI: 10.34808/tp4q-x257
title: Rate performance of (NH4)2V10O25·8H2O as cathode material in Li-ion batteries

description: The DataSet contains the galvanostatic charge/discharge curves of the ammonium vanadate nanostructures obtained by the hydrothermal method under an initial pressure of 50 bar ((NH4)2V10O25·8H2O). The battery tests of the samples were performed using the ATLAS 0961 MBI multichannel battery testing system with different current densities in the voltage range between 2.0 V and 4.0 V vs. Li/Li+
These results are part of a project defined in Electrochimica Acta journal (10.1016/j.electacta.2020.135919). In this paper, the information about samples and synthesis details are reported.
DOI: 10.34808/4gj6-ma18
title: SEM micrographs of NH4VO3 crystals - molar concetration factor after annealing

description: The DataSet contains the scanning electron microscopy (SEM) micrographs of NH4VO3 nano_crystals obtained by the LPE-IonEx method with different morphology after annealing at 400C under argon atmosphere (with a heating rate of 10 C/min). 
The surface morphologies of the samples were studied by an FEI Company Quanta FEG 250 scanning electron microscope (SEM) (Waltham, MA, USA), mounting the analyzed sample on a carbon conductive tape.  
These results are part of the project reported in Materials journal (10.3390/ma12203446), in this paper synthesis details are defined.
DOI: 10.34808/4x36-zn19
title: X-ray Photoelectron Spectroscopy studies of ammonium vanadate

description: The DataSet contains the high-resolution XPS studies of the ammonium vanadate nanostructures obtained by the hydrothermal method. XPS analyses were carried out with an X-ray photoelectron spectrometer (Omicron NanoTechnology) with a 128-channel collector. The measurements were performed at room temperature in an ultra-high vacuum condition (below 1.1x10-8 mBar). The photoelectrons were excited by an Mg-Kα X-Ray source. The X-ray anode was operated at 15 keV and 150 W. Omicron Argus hemispherical electron analyzer with a round aperture of 4 mm was used for analyzing emitted photoelectrons.
These results are part of a project defined in Electrochimica Acta journal (10.1016/j.electacta.2020.135919). In this paper, the information about samples and synthesis details are reported.
DOI: 10.34808/mktc-w431
title: Rate performance of the V2O5 nanocrystals as cathode material in Li-ion batteries

description: The DataSet contains the galvanostatic charge/discharge curves of the V2O5 nanocrystals obtained by the sol-gel method. The battery tests of the samples were performed using the Atlas-Sollich 0961 (Atlas-Sollich, Poland) with different current densities in the voltage range between 2.0 V and 4.0 V vs. Li/Li+. Here 1C is 294 mAh g-1.
These results are part of a project defined in the RSC Advances journal (10.1039/c6ra05695d). In this paper, the information about sample synthesis and measurement details are reported.
DOI: 10.15129/f1e373f5-b334-4d5d-901c-24ee5cfdb02e
title: Data for: "Fully superconducting machine for electric aircraft propulsion: study of AC loss for HTS stator"

description: This dataset contains labView data recording by labView 2018, in excel format which was created for the purposes of dataset in paper "Fully superconducting machine for electric aircraft propulsion: study of AC loss for HTS stator".
DOI: 10.34808/167r-v490
title: Topography of iron-phosphate glasses doped with niobium and titanium tested by confocal microscope

description: The topography of phosphate-iron glasses containing niobium and titanium were investigated with the use of confocal miscroscope. Glass samples of the composition of 35P2O5-30Fe2O3-35Nb2O5, 35P2O5-30Fe2O3-27.5Nb2O5-7.5TiO2 and 35P2O5-30Fe2O3-20Nb2O5-15TiO2  (in %mol) were prepared by the conventional melt quenching technique. Appropriate amounts of reagents ((NH4)2HPO4 (≥99.9%, POCH), Fe2O3 (≥99.9%, POCH), Nb2O5 (≥99.9%, PLUKA AG) and TiO2 (≥99.9%, anatase and rutile mixed, PROLABO)) were thoroughly mixed in an agate mortar and put on electric stove in temperature of 573K in order to carry out the decomposition process of (NH4)2HPO4. Next powders were melted in porcelain crucibles at 1573 K for 1-2 h. The melts were poured on preheated (to 573 K) brass plate and pressed by another plate to obtain flat circular samples (dimensions: 1-2 mm thick, 20-30 mm in diameter). The obtained pellets were annealed at 673 K for 1 h and cooled with furnace. The topography of the surface of the samples was investigated with Confocal Microscope Olympus OLS 4000 Lext equipped with a CCD camera.
Detailed information can be found in: doi: 10.1016/j.proeng.2014.12.488
DOI: 10.48370/ofd/81augw
title: Gloesporidiella variabilis (Laubert) Nannfeldt, 2525

description: Fungarium Mikromycetes
DOI: 10.6084/m9.figshare.14661588
title: C19_Risk perception_Preventive Practice.sav

description: Data from a cross-sectional study conducted among 1382 Bangladeshi adults from December 2020 to January 2021.<br>
DOI: 10.6084/m9.figshare.14661588.v1
title: C19_Risk perception_Preventive Practice.sav

description: Data from a cross-sectional study conducted among 1382 Bangladeshi adults from December 2020 to January 2021.<br>
DOI: 10.5281/zenodo.4783052
title: COVID-19 KG

description: a KG combining GNBR, COVID-19 Disease Map and CROssBAR.
DOI: 10.6084/m9.figshare.14661765
title: Sea ice thickness and snow depth in Baffin Bay (March 2003-2020)

description: This dataset contains gridded sea ice thickness derived from satellite altimetry in Baffin Bay for March for the period 2003-2020. The sea ice thickness was derived from freeboard using three snow depth products (the Warren climatology (Warren et al., 1999), passive microwave snow depth (Markus and Cavalieri, 1989), and SnowModel-LG (Liston et al., 2020)), two snow density products (the Warren climatology (Warren et al., 1999) and SnowModel-LG (Liston et al., 2020)), and three snow redistribution methods (no redistribution, sigmoidal redistribution (Kwok and Cunningham, 2008) and piecewise redistribution (Petty et al., 2020)). This dataset includes sea ice thickness estimations from all combinations of these products. The passive microwave snow depth dataset is also included.
DOI: 10.6084/m9.figshare.13483546
title: Comparative transcriptome and iTRAQ-based proteome analysis in mature leaves of <i>Brassica carinata</i> provides insights into the purple leaf color diversity

description: Anthocyanins are the main pigments in leaves, flowers and fruits, performing diverse biological functions in plants and exhibiting benefits for human health. The purple-leaved accession of <i>Brassicacarinata</i> was used to study the biosynthetic mechanism of anthocyanins in this study. To elucidate the mechanisms of anthocyanin accumulation in the purple-leaved line, we employed comparative transcriptome and iTRAQ-based proteome technique to investigate the expression profile of the purple-leaved line (BC-P01) in comparison with that of the green-leaved line (BC-G01) in <i>B. carinata</i>. In total, 58,124 transcripts and 4,631 proteins were identified, of which 5,183 and 285 exhibited significant changes in abundance between BC-G01 and BC-P01. Joint transcriptome and proteome analysis reveal six candidate genes of <i>UDP-glucosyl transferase 79B1</i> (<i>UGT79B1</i>) for synthesis of cyanidin 3-O-xylosyl(1-&gt;2)glucoside, <i>UDP-glucosyl transferase 79C1</i> (<i>UGT75C1</i>) for synthesis of cyanidin 3-O-xylosyl(1-&gt;2)glucoside, <i>chalcone isomerase</i> (<i>CHI</i>) and <i>chalcone synthase</i> (<i>CHS</i>) for synthesis of chalcone, <i>anthocyanidin 5-O-glucoside-6„-O-malonyltransferase</i> (<i>AT5MAT</i>) for malonylation of anthocyanins, <i>granule bound starch synthase 1</i> (<i>GBSS1</i>) for amylose starch biosynthetic, <i>glutathione s-transferase f3</i> (<i>GSTF3</i>) for encoding glutathione transferase for anthocyanin transporting, respectively. The expression level of the transcriptome data was further verified by qRT-PCR method. The study can provide useful information for biosynthesis of total anthocyanin content (TAC) and molecular breeding in <i>B. carinata</i> and other species in Brassiceae.
DOI: 10.6084/m9.figshare.13483546.v1
title: Comparative transcriptome and iTRAQ-based proteome analysis in mature leaves of <i>Brassica carinata</i> provides insights into the purple leaf color diversity

description: Anthocyanins are the main pigments in leaves, flowers and fruits, performing diverse biological functions in plants and exhibiting benefits for human health. The purple-leaved accession of <i>Brassicacarinata</i> was used to study the biosynthetic mechanism of anthocyanins in this study. To elucidate the mechanisms of anthocyanin accumulation in the purple-leaved line, we employed comparative transcriptome and iTRAQ-based proteome technique to investigate the expression profile of the purple-leaved line (BC-P01) in comparison with that of the green-leaved line (BC-G01) in <i>B. carinata</i>. In total, 58,124 transcripts and 4,631 proteins were identified, of which 5,183 and 285 exhibited significant changes in abundance between BC-G01 and BC-P01. Joint transcriptome and proteome analysis reveal six candidate genes of <i>UDP-glucosyl transferase 79B1</i> (<i>UGT79B1</i>) for synthesis of cyanidin 3-O-xylosyl(1-&gt;2)glucoside, <i>UDP-glucosyl transferase 79C1</i> (<i>UGT75C1</i>) for synthesis of cyanidin 3-O-xylosyl(1-&gt;2)glucoside, <i>chalcone isomerase</i> (<i>CHI</i>) and <i>chalcone synthase</i> (<i>CHS</i>) for synthesis of chalcone, <i>anthocyanidin 5-O-glucoside-6„-O-malonyltransferase</i> (<i>AT5MAT</i>) for malonylation of anthocyanins, <i>granule bound starch synthase 1</i> (<i>GBSS1</i>) for amylose starch biosynthetic, <i>glutathione s-transferase f3</i> (<i>GSTF3</i>) for encoding glutathione transferase for anthocyanin transporting, respectively. The expression level of the transcriptome data was further verified by qRT-PCR method. The study can provide useful information for biosynthesis of total anthocyanin content (TAC) and molecular breeding in <i>B. carinata</i> and other species in Brassiceae.
DOI: 10.6084/m9.figshare.13502291
title: Regulatory mechanisms underlying florigenesis in <i>Vanilla planifolia</i> Andrews: A study of MADS-box gene family

description: Orchid flowers have unique floral organisation which make them indispensable to the floral industry. The MADS-box gene family encodes for transcription factors that are involved mainly in floral organisation. This study was conducted on <i>Vanilla planifolia</i>, which is an important orchid that is commercially exploited by the food industry for a highly valued flavour, vanillin. <i>V. planifolia</i> transcriptome was analysed and 33 MADS-box transcripts that encode putative MADS-box proteins, were identified. Phylogenetic analysis of the VpMADS proteins with other closely related plant species showed clear clustering into type I and type II. Protein characterisation, duplication events, and their evolutionary analysis were performed. The spatio-temporal expression profile for <i>VpMADS</i> genes at different plant developmental stages showed high expression of these genes in specific floral tissues. Secondary and tertiary structural analyses was also done for 13 MADS-box proteins representing each sub-class and their 3D structures were deduced. This study provides a basic understanding of the functioning of MADS-box gene family in <i>V. planifolia</i> and paves the path for functional characterisation of selected <i>VpMADS</i> genes <i>in planta</i> and in a heterologous system for managing the commercially important traits in this orchid.
DOI: 10.6084/m9.figshare.13502291.v1
title: Regulatory mechanisms underlying florigenesis in <i>Vanilla planifolia</i> Andrews: A study of MADS-box gene family

description: Orchid flowers have unique floral organisation which make them indispensable to the floral industry. The MADS-box gene family encodes for transcription factors that are involved mainly in floral organisation. This study was conducted on <i>Vanilla planifolia</i>, which is an important orchid that is commercially exploited by the food industry for a highly valued flavour, vanillin. <i>V. planifolia</i> transcriptome was analysed and 33 MADS-box transcripts that encode putative MADS-box proteins, were identified. Phylogenetic analysis of the VpMADS proteins with other closely related plant species showed clear clustering into type I and type II. Protein characterisation, duplication events, and their evolutionary analysis were performed. The spatio-temporal expression profile for <i>VpMADS</i> genes at different plant developmental stages showed high expression of these genes in specific floral tissues. Secondary and tertiary structural analyses was also done for 13 MADS-box proteins representing each sub-class and their 3D structures were deduced. This study provides a basic understanding of the functioning of MADS-box gene family in <i>V. planifolia</i> and paves the path for functional characterisation of selected <i>VpMADS</i> genes <i>in planta</i> and in a heterologous system for managing the commercially important traits in this orchid.