cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10013084
title: Genome-wide comparison reveals large structural variants in the cassava landraces  Authors
title: Genome-weide comparisob

description: Structural variants (SVs) are critical for plant genomic diversity and phenotypic variation. This study investigates a large, 9.7 Mbp highly repetitive segment on chromosome 12 of TMEB117, a region not previously characterized in cassava. We aim to explore its presence and variability across multiple cassava landraces, providing insights into its genomic significance and potential implications.
DOI: 10.5281/zenodo.10047781
title: Haplotype-resolved genome of heterozygous African cassava TMEB117 (Manihot esculenta)
title: Genome annotation

description: Cassava (Manihot esculenta) is a vital tropical root crop providing essential dietary energy to over 800 million people in tropical and subtropical regions. As a climate-resilient crop, its significance grows as the human population expands. However, yield improvement faces challenges from biotic and abiotic stress and limited breeding. Advanced sequencing and assembly techniques enabled the generation of a highly accurate, nearly complete, haplotype-resolved genome of the African cassava cultivar TMEB117. With a base-level accuracy of QV > 64, N50 of > 35 Mbp, and 98.9% BUSCO completeness, it is the most accurate cassava genome sequence to date. Over 60% of the genome comprises repetitive elements. We predicted over 45,000 gene models for both haplotypes. This achievement offers valuable insights into the heterozygosity genome organization of the cassava genome, with improved accuracy, completeness, and phased genomes. Due to its high susceptibility to African Cassava Mosaic Virus (ACMV) infections compared to other cassava varieties, TMEB117 provides an ideal reference for studying virus resistance mechanisms, including epigenetic variations and smallRNA expressions.
DOI: 10.5281/zenodo.13839839
title: Genome-wide comparison reveals large structural variants in the cassava landraces  Authors
title: Genome-weide comparisob

description: Structural variants (SVs) are critical for plant genomic diversity and phenotypic variation. This study investigates a large, 9.7 Mbp highly repetitive segment on chromosome 12 of TMEB117, a region not previously characterized in cassava. We aim to explore its presence and variability across multiple cassava landraces, providing insights into its genomic significance and potential implications.
DOI: 10.15468/dl.3dx7hw
title: Occurrence Download

description: A dataset containing 5664 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Renealmia nicolaioides Loes., Renealmia polypus Gagnep., Renealmia foliifera Standl., Renealmia battenbergiana Cummins ex Baker, Renealmia helenae Maas, Renealmia concinna Standl., Renealmia pluriplicata Maas, Renealmia cernua (Sw. ex Roem. & Schult.) J.F.Macbr., Renealmia alpinia (Rottb.) Maas, Renealmia congolana De Wild. & T.Durand, Renealmia breviscapa (Poepp. & Endl.) Poepp. & Endl., Renealmia aromatica (Aubl.) Griseb., Renealmia thyrsoidea (Ruiz & Pav.) Poepp. & Endl., Renealmia bracteata De Wild. & T.Durand, Renealmia congesta Maas, Renealmia lucida Maas, Renealmia cincinnata (K.Schum.) T.Durand & Schinz)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 }
 ]
}

 The dataset includes 5664 records from 191 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032813-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.art33u
title: Occurrence Download

description: A dataset containing 18876 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Actinia equina (Linnaeus, 1758)"
 ]
}

 The dataset includes 18876 records from 191 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032816-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bmdmya
title: Occurrence Download

description: A dataset containing 2477 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Zealand",
 "TaxonKey is Xenicus gilviventris Pelzeln, 1867"
 ]
}

 The dataset includes 2477 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032817-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.de3qdt
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphonopelma joshua Prentice, 1997"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032818-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fgf95f
title: Occurrence Download

description: A dataset containing 204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Leucocroton obovatus Urb., Leucocroton linearifolius Britton, Leucocroton moncadae Borhidi, Leucocroton revolutus C.Wright, Leucocroton havanensis Borhidi, Leucocroton saxicola Britton, Leucocroton anomalus Borhidi, Leucocroton stenophyllus Urb., Leucocroton acunae Borhidi, Leucocroton pachyphyllus Urb., Leucocroton pallidus Britton & P.Wilson, Leucocroton comosus Urb., Leucocroton sameki Borhidi, Leucocroton ekmanii Urb., Leucocroton pachyphylloides Borhidi, Leucocroton wrightii Griseb., Leucocroton flavicans Müll.Arg., Leucocroton virens Griseb.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 }
 ]
}

 The dataset includes 204 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032819-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kqpgtp
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphonopelma paloma Prentice, 1993"
 ]
}

 The dataset includes 40 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032821-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.er273c
title: Occurrence Download

description: A dataset containing 205967 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CM Birds Collection"
 ]
}

 The dataset includes 205967 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032788-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc250lsl
title: CCDC 1996579: Experimental Crystal Structure Determination

description: Related Article: Hajime Kameo, Hiroki Yamamoto, Koki Ikeda, Tomohito Isasa, Shigeyoshi Sakaki, Hiroyuki Matsuzaka, Yago García-Rodeja, Karinne Miqueu, Didier Bourissou|2020|J.Am.Chem.Soc.|142|14039|doi:10.1021/jacs.0c04690
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26g6mj
title: CCDC 2039447: Experimental Crystal Structure Determination

description: Related Article: Arnold L. Rheingold and David S. Glueck|2020|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc286w1f
title: CCDC 2091974: Experimental Crystal Structure Determination

description: Related Article: Diana V. Aleksanyan, Svetlana G. Churusova, Valentina V. Brunova, Alexander S. Peregudov, Aleksander M. Shakhov, Ekaterina Yu. Rybalkina, Zinaida S. Klemenkova, Elena G. Kononova, Gleb L. Denisov, Vladimir A. Kozlov|2021|Dalton Trans.|50|16726|doi:10.1039/D1DT03259C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28jkt6
title: CCDC 2101298: Experimental Crystal Structure Determination

description: Related Article: Nico   Pirkl|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h4f14
title: CCDC 2298155: Experimental Crystal Structure Determination

description: Related Article: Matthew J. G. Sinclair, Nil Roig, Matthew R. Gyton, Nikolaos Tsoureas, F. Geoffrey N. Cloke, Mercedes Alonso, Adrian B. Chaplin|2024|Inorg.Chem.|63|1709|doi:10.1021/acs.inorgchem.3c03434
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h4f25
title: CCDC 2298156: Experimental Crystal Structure Determination

description: Related Article: Matthew J. G. Sinclair, Nil Roig, Matthew R. Gyton, Nikolaos Tsoureas, F. Geoffrey N. Cloke, Mercedes Alonso, Adrian B. Chaplin|2024|Inorg.Chem.|63|1709|doi:10.1021/acs.inorgchem.3c03434
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21lbtt
title: CCDC 1894466: Experimental Crystal Structure Determination

description: Related Article: Peng Cui, Melissa R. Hoffbauer, Mariya Vyushkova, Vlad M. Iluc|2019|Dalton Trans.|48|9663|doi:10.1039/C9DT00585D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2bf10v
title: CSD 2157476: Experimental Crystal Structure Determination

description: Related Article: Mei Yan, Ru-Ling Tang, Wenfeng Zhou, Wenlong Liu, Sheng-Ping Guo|2022|Dalton Trans.|51|12921|doi:10.1039/D2DT02038F
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.67pejj
title: Occurrence Download

description: A dataset containing 406 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vella aspera Pers."
 ]
}

 The dataset includes 406 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032823-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12531290
title: Data used in the study: Highly dynamic gamma-ray emissions are common in tropical thunderclouds

description: This repository includes the data presented in the study: Highly dynamic gamma-ray emissions are common in tropical thunderclouds.

Detailed description is given in the uploaded pdf document: Data_description.pdf
DOI: 10.6084/m9.figshare.27074344
title: Data obtained with both CTD & DST loggers.

description: This dataset was used to publish the article "Sub-fat temperature variations and heart-rate adjustments in the southern elephant seal <i>Mirounga leonina</i> as a function of dive duration, depth, and water temperature".<br>This dataset contains 3 subsets :data_CTD_allIndiv : contains records of pressure, external temperature and prey capture success for each individual every second at sea,data_summary_dives : contains summaries of each dive of each individual,data_Tsc_30s : contains records of sub-fat temperature for each individual every 30 seconds, at sea.<br>
DOI: 10.6084/m9.figshare.27074344.v1
title: Data obtained with both CTD & DST loggers.

description: This dataset was used to publish the article "Sub-fat temperature variations and heart-rate adjustments in the southern elephant seal <i>Mirounga leonina</i> as a function of dive duration, depth, and water temperature".<br>This dataset contains 3 subsets :data_CTD_allIndiv : contains records of pressure, external temperature and prey capture success for each individual every second at sea,data_summary_dives : contains summaries of each dive of each individual,data_Tsc_30s : contains records of sub-fat temperature for each individual every 30 seconds, at sea.<br>
DOI: 10.6084/m9.figshare.27074350
title: Data summarized by period (day/night).

description: This dataset was used to publish the article "Sub-fat temperature variations and heart-rate adjustments in the southern elephant seal <i>Mirounga leonina</i> as a function of dive duration, depth, and water temperature".<br>This dataset contains 7 subsets : one for each individual and one for all.<br>Each individual subset contains 30 variables :Nb_Period : number of the period,Start_period : datetime of the period beginning, End_period : datetime of the period ending,Duration_period : time (hours) of the period duration,Time_period : corresponds to the time of the day (day or night) during the considering period,Nb_dives : number of dives during the period,Sum/Mean_dive_duration : total/mean dive time during the period (s),Sum/Mean_surf_duration : total/mean surface recovering time during the period (s),Mean/Max_depth : mean/maximum diving depth during the period (m),Sum/Mean_max_depth : total/mean of maximum diving depths during the period (m),Sum/Mean_Capt : total/mean of prey capture attempts during the period,Total_strokes : total of fin strokes during the period,Total_SAS : total of sum of strokes amplitudes (cm),Total/Mean_DivEff : total/mean of diving effort during the period (cm/s),Mean/Sum/Ampl_Ta : mean/total/amplitude of ambient temperature during the period (°C),Mean/Sum_ampl_Ta : mean/total of ambient temperature amplitudes during the period (°C),Mean/Sum/Ampl_Tsc : mean/total/amplitude of subcutaneous temperature during the period (°C),Mean/Sum_ampl_Tsc : mean/total of subcutaneous temperature amplitudes during the period (°C).
DOI: 10.6084/m9.figshare.27074350.v1
title: Data summarized by period (day/night).

description: This dataset was used to publish the article "Sub-fat temperature variations and heart-rate adjustments in the southern elephant seal <i>Mirounga leonina</i> as a function of dive duration, depth, and water temperature".<br>This dataset contains 7 subsets : one for each individual and one for all.<br>Each individual subset contains 30 variables :Nb_Period : number of the period,Start_period : datetime of the period beginning, End_period : datetime of the period ending,Duration_period : time (hours) of the period duration,Time_period : corresponds to the time of the day (day or night) during the considering period,Nb_dives : number of dives during the period,Sum/Mean_dive_duration : total/mean dive time during the period (s),Sum/Mean_surf_duration : total/mean surface recovering time during the period (s),Mean/Max_depth : mean/maximum diving depth during the period (m),Sum/Mean_max_depth : total/mean of maximum diving depths during the period (m),Sum/Mean_Capt : total/mean of prey capture attempts during the period,Total_strokes : total of fin strokes during the period,Total_SAS : total of sum of strokes amplitudes (cm),Total/Mean_DivEff : total/mean of diving effort during the period (cm/s),Mean/Sum/Ampl_Ta : mean/total/amplitude of ambient temperature during the period (°C),Mean/Sum_ampl_Ta : mean/total of ambient temperature amplitudes during the period (°C),Mean/Sum/Ampl_Tsc : mean/total/amplitude of subcutaneous temperature during the period (°C),Mean/Sum_ampl_Tsc : mean/total of subcutaneous temperature amplitudes during the period (°C).
DOI: 10.6084/m9.figshare.27074575
title: Data collected every 5min by the DST logger.

description: This dataset was used to publish the article "Sub-fat temperature variations and heart-rate adjustments in the southern elephant seal <i>Mirounga leonina</i> as a function of dive duration, depth, and water temperature".<br>This dataset contains 7 subsets : one for each individual and one for all.<br>Each individual subset contains 9 variables :Date_Time : date and time of recording,Tsc : sub-fat/subcutaneous temperature (°C),HR : heart rate (bpm),Sites : can take 3 different values depending on the date (when individuals are on land before departure, when they are at sea and when individuals are on land after arrival),Environment : details of the environment in which the individual is located (on land or at sea),diff_SolarNoon : time (hour), considering the difference with solar noon on some dates,diff_SolarNoon_interpol : interpolation of diff_SolarNoon from first to last value of diff_SolarNoon,diff_SolarNoon_interpol_AllJourney : interpolation of diff_SolarNoon_interpol when individuals are on land.Day.Night : corresponds to the time of the day (day or night).<br>
DOI: 10.15468/dl.jnmq55
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pangasius hypophthalmus (Sauvage, 1878)"
 ]
}

 The dataset includes 38 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032828-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mv8gq5
title: Occurrence Download

description: A dataset containing 58187 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is DMNS Bird Collection (Arctos)"
 ]
}

 The dataset includes 58187 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032827-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h3v9f8
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 {
 "or" : [
 "InstitutionKey is not null",
 "CollectionKey is not null"
 ]
 },
 "BasisOfRecord is one of (Specimen, Fossil, Material sample, Living Specimen, Material citation)"
 ]
 },
 {
 "and" : [
 "Country is one of (Mexico)",
 "TaxonKey is one of (Matelea cyclophylla (Standl.) Woodson)"
 ]
 }
 ]
}

 The dataset includes 72 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032830-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13847653
title: 2D Electrial Impedance Tomography - Porcine model of Acute Lung Injury - PEEP trial

description: This is an Electrical Impedance Tomography (EIT) dataset of a porcine model of acute lung injury (ALI), performing positive end-expiratory pressure (PEEP) trials in order to find 'optimal' PEEP.

The data constist of 8 pigs with 2 measurements each, once before ALI and once after ALI induciton.

Data is present as the *.bin format exported from Dräger Pulmovista V500 software. It can be read and analysed using the ALIVE eitprocessing software.
DOI: 10.5281/zenodo.13847654
title: 2D Electrial Impedance Tomography - Porcine model of Acute Lung Injury - PEEP trial

description: This is an Electrical Impedance Tomography (EIT) dataset of a porcine model of acute lung injury (ALI), performing positive end-expiratory pressure (PEEP) trials in order to find 'optimal' PEEP.

The data constist of 8 pigs with 2 measurements each, once before ALI and once after ALI induciton.

Data is present as the *.bin format exported from Dräger Pulmovista V500 software. It can be read and analysed using the ALIVE eitprocessing software.
DOI: 10.15468/dl.nuqs9q
title: Occurrence Download

description: A dataset containing 720 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pangasianodon hypophthalmus (Sauvage, 1878)"
 ]
}

 The dataset includes 720 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032831-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/142f8787-129c-4618-9621-05622698bd9f
title: Dataset associated to the paper "A data-driven impact-based analysis stemming from first responders reports to predict wind damage to urban trees"

description: This data deposit is associated to the manuscript *"A data-driven impact-based analysis stemming from first responders reports to predict wind damage to urban trees"*, currently (Oct 24) under revision for [Frontiers in Climate](https://www.frontiersin.org/journals/climate). The contents of the deposit should suffice to reproduce the figures presented in the published paper. We put care at preparing this dataset, but of course problems might arise. If you have readthis documentation and yet you are unable to run the examples, drop us a line at garciamarti [at] knmi.nl, and we can help.