cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14752122
title: Data for "Why population heterogeneity matters for modelling infectious diseases"

description: Code

Code to reproduce all figures is included in code.zip. The code is also available on GitHub at https://github.com/lanl/epicast_heterogeneity. See README.md within code.zip or the GitHub page for more details (license, copyright, etc.). The code should work as is, you only need to provide the locaiton of the unzipped data (i.e., the path to the folder extracted from data.zip); however, if you encounter a bug please try the code on GitHub or file an issue on the GitHub repository page.

All included code has been approved for open source release and has been assigned O4867.

Data organization

main_figures

Epicast run data that is used for the main figures of the paper: Figures 4, 5, 6 and S1-S3.

figure3

Epicast run data used for Figure 3.

aux

Data exported from UrbanPop containing demographic data for agents from NM, NY, and FL that is used for Figures 4-6 and S1-S3.

sa_runs

Epicast run data, using an alternate set of parameters, that supports Figures S4-S6. See the manuscript or code for details.

File formats

The demographic data contained in the aux directory is made availabe as CSV files. The simulation results in the figure3, sa_runs, and main_figures directories are made available in both binary (events.bin extension) and gzipped CSV formats. The binary files can be accessed using the code that accompanines the paper (code.zip or on the GitHub repo).

Release

These data are approved for public distribution by Los Alamos National Laboratory under LA-UR-25-20531.
DOI: 10.5281/zenodo.14752123
title: Data for "Why population heterogeneity matters for modelling infectious diseases"

description: Code

Code to reproduce all figures is included in code.zip. The code is also available on GitHub at https://github.com/lanl/epicast_heterogeneity. See README.md within code.zip or the GitHub page for more details (license, copyright, etc.). The code should work as is, you only need to provide the locaiton of the unzipped data (i.e., the path to the folder extracted from data.zip); however, if you encounter a bug please try the code on GitHub or file an issue on the GitHub repository page.

All included code has been approved for open source release and has been assigned O4867.

Data organization

main_figures

Epicast run data that is used for the main figures of the paper: Figures 4, 5, 6 and S1-S3.

figure3

Epicast run data used for Figure 3.

aux

Data exported from UrbanPop containing demographic data for agents from NM, NY, and FL that is used for Figures 4-6 and S1-S3.

sa_runs

Epicast run data, using an alternate set of parameters, that supports Figures S4-S6. See the manuscript or code for details.

File formats

The demographic data contained in the aux directory is made availabe as CSV files. The simulation results in the figure3, sa_runs, and main_figures directories are made available in both binary (events.bin extension) and gzipped CSV formats. The binary files can be accessed using the code that accompanines the paper (code.zip or on the GitHub repo).

Release

These data are approved for public distribution by Los Alamos National Laboratory under LA-UR-25-20531.
DOI: 10.15468/dl.e3xuxx
title: Occurrence Download

description: A dataset containing 27538 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The Spider Collection at the Staatliches Museum für Naturkunde Karlsruhe"
 ]
}

 The dataset includes 27538 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060360-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mjy3h7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Luticola kotschyi (Grunow) D.G.Mann",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((32.064 -28.9416,32.4847 -28.5786,30.5701 -28.5786,30.5701 -30.7329,30.6252 -30.6659,31.4179 -29.4257,31.8178 -29.0299,32.064 -28.9416))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060361-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.29371466
title: <b>Enigmatic tubular ultrastructure in the bacterial defensive symbiont</b> <b>of the Asian citrus psyllid</b><b> </b><b><i>Diaphorina citri</i></b>

description: Electron microscopy dataset used for analysis in the study "Enigmatic tubular ultrastructure in the bacterial defensive symbiont of the Asian citrus psyllid <i>Diaphorina citri</i>"
DOI: 10.6084/m9.figshare.29371466.v1
title: HVEM-tomography-rawdata.zip

description: <b>High-voltage electron tomography</b><br>A 500 nm-thick section collected on a single-slot grid was subjected to imaging without staining. Data acquisition was conducted using a 1,000 kV electron microscope (H1250M, Hitachi). Tilt series were captured on a 2k×2k CCD camera (FC400, Direct Electron LP) at 2° increments within a tilt range from -60° to +60°.
DOI: 10.6084/m9.figshare.29371466.v2
title: <b>Enigmatic tubular ultrastructure in the bacterial defensive symbiont</b> <b>of the Asian citrus psyllid</b><b> </b><b><i>Diaphorina citri</i></b>

description: Electron microscopy dataset used for analysis in the study "Enigmatic tubular ultrastructure in the bacterial defensive symbiont of the Asian citrus psyllid <i>Diaphorina citri</i>"
DOI: 10.5281/zenodo.15706834
title: Exploration of prognostic genes associated in breast cancer based

description: .本研究通过整合生物信息学和临床验证,确定了 BRCA 中四个与淋巴管生成相关的预后基因
DOI: 10.15468/dl.5aruxx
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Caprimulgus prigoginei Louette, 1990",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060362-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.286r3q
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Luticola kotschyi (Grunow) D.G.Mann",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.5808 -24.13,35.5909 -24.0715,30.5701 -24.0715,30.5701 -28.5786,32.4847 -28.5786,32.55 -28.5222,33.0346 -26.8668,32.9741 -26.7838,33.0415 -26.059,32.9304 -26.0011,32.7994 -26.1281,32.6834 -26.0015,32.813 -25.8728,32.8513 -25.7166,33.3048 -25.3731,35.1489 -24.6699,35.5808 -24.13))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060363-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.14215426
title: Revisão de Literatura

description: Apresenta-se este ficheiro no âmbito da dissertação do Mestrado em Ciência da Informação da Faculdade de Engenharia e Faculdade de Letras da Universidade do Porto, intitulada: "Preparar uma organização para a introdução de um LLM no seu sistema de informação: Caso na Gestão Financeira e Administrativa no INEGI".

O processo de pesquisa para a Revisão Sistemática de Literatura seguirá as orientações do protocolo PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses).

Este ficheiro está divido em 12 folhas:



Info_geral: Descreve-se os critérios de inclusão e as bases de dados escolhidas, com a respetiva justificação.

1º pesquisa: Tabela inicial de artigos encontrados.

2º pesquisa: Tabela intermédia da pesquisa de artigos

3º pesquisa: Tabela final da pesquisa de artigos

RCAAP: Artigos da tabela final referentes à base de dados RCAAP.

ASU: Artigos da tabela final referentes à base de dados ASU.

SAGE: Artigos da tabela final referentes à base de dados SAGE.

SCOPUS: Artigos da tabela final referentes à base de dados SCOPUS.

WEBSCIENCES: Artigos da tabela final referentes à base de dados Web of Science.

Resultados_finais: Síntese dos resultados da tabela final, com indicação dos artigos selecionados para a tese e dos que não foram escolhidos, organizados por base de dados (e gráficos correspondentes).

Artigos_finais: Compila-se numa folha os artigos escolhidos da revisão de literatura.

PRISMA: Apresenta-se o PRISMA da revisão de literatura.
DOI: 10.5281/zenodo.14215427
title: Revisão de Literatura

description: Apresenta-se este ficheiro no âmbito da dissertação do Mestrado em Ciência da Informação da Faculdade de Engenharia e Faculdade de Letras da Universidade do Porto, intitulada: "Preparar uma organização para a introdução de um LLM no seu sistema de informação: Caso na Gestão Financeira e Administrativa no INEGI".

O processo de pesquisa para a Revisão Sistemática de Literatura seguirá as orientações do protocolo PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses).

Este ficheiro está divido em 12 folhas:



Info_geral: Descreve-se os critérios de inclusão e as bases de dados escolhidas, com a respetiva justificação.

1º pesquisa: Tabela inicial de artigos encontrados.

2º pesquisa: Tabela intermédia da pesquisa de artigos

3º pesquisa: Tabela final da pesquisa de artigos

RCAAP: Artigos da tabela final referentes à base de dados RCAAP.

ASU: Artigos da tabela final referentes à base de dados ASU.

SAGE: Artigos da tabela final referentes à base de dados SAGE.

SCOPUS: Artigos da tabela final referentes à base de dados SCOPUS.

WEBSCIENCES: Artigos da tabela final referentes à base de dados Web of Science.

Resultados_finais: Síntese dos resultados da tabela final, com indicação dos artigos selecionados para a tese e dos que não foram escolhidos, organizados por base de dados (e gráficos correspondentes).

Artigos_finais: Compila-se numa folha os artigos escolhidos da revisão de literatura.

PRISMA: Apresenta-se o PRISMA da revisão de literatura.
DOI: 10.6084/m9.figshare.29371847
title: Elucidating the regulation and pathophysiological role of NASH-associated macrophages

description: This project aims to study the role of Trem2 and Ms4a7 in regulating TREM2+ macrophages.
DOI: 10.6084/m9.figshare.29371847.v1
title: Elucidating the regulation and pathophysiological role of NASH-associated macrophages

description: This project aims to study the role of Trem2 and Ms4a7 in regulating TREM2+ macrophages.
DOI: 10.15468/dl.55q8rf
title: Occurrence Download

description: A dataset containing 350440 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "DatasetKey is EOD – eBird Observation Dataset",
 "GadmGid is COL.13_2",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 350440 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060342-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dkcn2m
title: Occurrence Download

description: A dataset containing 544 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Caprimulgus ruficollis Temminck, 1820",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 544 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060364-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kgpqmb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Luticola kotschyi (Grunow) D.G.Mann",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((31.8862 -21.3285,30.5701 -20.3186,30.5701 -24.0715,35.5909 -24.0715,35.6007 -24.0157,35.6007 -23.8125,35.4969 -23.7035,35.6007 -23.165,35.6007 -22.9702,35.227 -22.2482,34.6862 -21.6944,34.013 -21.3095,33.5 -21.1593,32.9675 -21.1092,32.4352 -21.1612,31.8862 -21.3285))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060365-250525065834625/datasets/export for details.
DOI: 10.48324/dandi.001511/0.250620.1610
title: Optically tagged oxytocin neuron recordings from female mouse PVN

description: Female mice (either Ai80F;Oxt-Flp or Oxt-Cre with Cre-dependent ChR2 virus injection) were implanted with silicon probes from either Cambridge Neurotechnology or Neuronexus. Mice were recorded during pup retrieval.
DOI: 10.15468/dl.b39hfm
title: Occurrence Download

description: A dataset containing 19020 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-68.05403 -32.30512,-35.82554 -32.30512,-35.82554 -19.40043,-68.05403 -19.40043,-68.05403 -32.30512))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Procnias nudicollis (Vieillot, 1817)"
 ]
}

 The dataset includes 19020 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060366-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m7g9x6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Luticola kotschyi (Grunow) D.G.Mann",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1586 -33.5889,28.2048 -32.9007,25.5395 -32.9007,25.5395 -34.1098,25.6468 -34.1222,25.7787 -34.0734,25.7098 -33.9109,25.8639 -33.797,26.4806 -33.8473,27.1586 -33.5889))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060367-250525065834625/datasets/export for details.
DOI: 10.15468/dl.emjm63
title: Occurrence Download

description: A dataset containing 8511 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Caprimulgus rufigena A.Smith, 1845",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 8511 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060368-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15706935
title: Raw_Data_Fuzzy_Statistical_Analysis
DOI: 10.5281/zenodo.15706936
title: Raw_Data_Fuzzy_Statistical_Analysis
DOI: 10.6084/m9.figshare.29356448
title: Renal_Data_image.rar

description: This is ultrasound images.
DOI: 10.6084/m9.figshare.29356448.v1
title: Renal_Data_image.rar

description: This is ultrasound images.
DOI: 10.15468/dl.c8nnct
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Luticola kotschyi (Grunow) D.G.Mann",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((18.2339 -32.5266,18.1411 -32.657,18.1007 -32.7021,18.0224 -32.6366,17.8923 -32.6419,17.754 -32.8255,17.7723 -32.9007,20.509 -32.9007,20.509 -28.5786,16.2782 -28.5786,16.4358 -28.7202,16.726 -29.1235,17.1957 -30.3752,17.6655 -31.1743,18.1322 -31.7679,18.2495 -32.2638,18.2339 -32.5266))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060369-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15706625
title: Multi-locus nuclear barcode assessment of genetic diversity in Swiss Orthoptera unveils conservation status limitations

description: With accelerating biodiversity loss, tracking both inter- and intraspecific diversity is critical, as within-species variation underpins population viability and adaptive potential. Traditional single-locus barcoding, targeting short mitochondrial or plastid fragments, generally provides reliable species-level resolution but poorly captures intraspecific variation. To address this, we developed an Orthoptera-specific marker panel targeting 398 nuclear loci plus the complete mitogenome and ribosomal DNA, sequencing these regions in 645 specimens representing every Swiss Orthoptera species sampled during the nationwide Red List update. This multilocus dataset produced a well-supported phylogeny and resolved several taxonomic ambiguities with direct conservation relevance. Genetic variation was further used to infer population structure and to test whether intraspecific diversity correlates with ecological traits and Red List status. While species’ IUCN threat levels were not correlated with genetic diversity, we found a significant negative association between genetic diversity and dependence on riparian habitats: river-bank specialists showed lower diversity, likely reflecting the severe fragmentation and alteration of these ecosystems. Our results demonstrate that genetic diversity measures from multilocus markers provide valuable, complementary insights into conservation status. However, the lack of correlation with IUCN threat levels highlights a challenge for integrating genetic data into Red List assessments: while low diversity often flags advanced decline and urgent action, high diversity does not necessarily signal low extinction risk, as it can persist for some time after population decline. Genomic data should therefore be incorporated cautiously alongside traditional criteria. These findings are being integrated into the upcoming Swiss Orthoptera Red List update.
DOI: 10.34740/kaggle/dsv/12230291
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.7hxp6d
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Caprimulgus solala Ash Safford, Telfer Duckworth & Zewdie, 1995",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060370-250525065834625/datasets/export for details.
DOI: 10.15468/dl.fe7sdy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Luticola kotschyi (Grunow) D.G.Mann",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.6372 -28.0032,16.2782 -28.5786,20.509 -28.5786,20.509 -24.0715,15.4933 -24.0715,15.4945 -24.1257,16.0509 -25.6631,15.6372 -28.0032))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060371-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.29330108
title: Data supporting the method and analysis in Biomimetic nanofibers for sustainable thermal insulation

description: We present a biomimetic nanofiber material produced via a turbulence-driven spinning system, offering superior thermal insulation, comfort, and sustainability compared to traditional animal-derived materials, and enabling scalable, eco-friendly alternatives for mass-market textiles.
DOI: 10.6084/m9.figshare.29330108.v2
title: Data supporting the method and analysis in Biomimetic nanofibers for sustainable thermal insulation

description: We present a biomimetic nanofiber material produced via a turbulence-driven spinning system, offering superior thermal insulation, comfort, and sustainability compared to traditional animal-derived materials, and enabling scalable, eco-friendly alternatives for mass-market textiles.
DOI: 10.6084/m9.figshare.29330108.v1
title: Data supporting the method and analysis in Biomimetic nanofibers for sustainable thermal insulation

description: We present a biomimetic nanofiber material produced via a turbulence-driven spinning system, offering superior thermal insulation, comfort, and sustainability compared to traditional animal-derived materials, and enabling scalable, eco-friendly alternatives for mass-market textiles.
DOI: 10.15468/dl.bwke3q
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Caprimulgus stellatus Blundell & Lovat, 1899",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 108 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060372-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.56zcva
title: Occurrence Download

description: A dataset containing 50583 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Collection Herpetology SMF"
 ]
}

 The dataset includes 50583 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262313-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r96atv
title: Occurrence Download

description: A dataset containing 111153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pittosporum tobira (Murray) Aiton fil.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 111153 records from 276 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016852-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.