cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1052654.10fu
title: SH1052654.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1052656.10fu
title: SH1052656.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1052658.10fu
title: SH1052658.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1052660.10fu
title: SH1052660.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.7266/5vsz0kfh
title: Gulf of Mexico coral and otolith radiocarbon curve
DOI: 10.25934/pr00008329.1
title: Available datapackage for study 'A Multicenter, Randomized, Open-label, 3-Arm Phase 3 Study of Encorafenib + Cetuximab Plus or Minus Binimetinib vs. Irinotecan/Cetuximab or Infusional 5-Fluorouracil (5-FU)/Folinic Acid (FA)/Irinotecan (FOLFIRI)/Cetuximab With a Safety Lead-in of Encorafenib + Binimetinib + Cetuximab in Patients With BRAF V600E-mutant Metastatic Colorectal Cancer'

description: This is a multicenter, randomized, open-label, 3-arm Phase 3 study to evaluate encorafenib + cetuximab plus or minus binimetinib versus Investigator's choice of either irinotecan/cetuximab or FOLFIRI/cetuximab, as controls, in patients with BRAFV600E mCRC whose disease has progressed after 1 or 2 prior regimens in the metastatic setting. The study contains a Safety Lead-in Phase in which the safety and tolerability of encorafenib + binimetinib + cetuximab will be assessed prior to the Phase 3 portion of the study.
DOI: 10.15151/esrf-es-2048851255
title: Probing Spatial Correlations of Charge Density Waves and Structural Variations in YBCO Using Scanning X-ray Diffraction Microscopy (SXDM)

description: We propose to study the correlation between the structural properties, in particular, the lattice strain, of the high temperature superconductor (HTS) YBa2Cu3O7-x with the onset of charge density waves (CDW) in the material. STM measurements on CeTe showed that strain only indirectly determines the onset of CDWs in a material through the modification of the local lattice parameters. This experiment looks to confirm the generality of this phenomenon in charge density wave materials. Furthermore, due to the diametric opposition between the phenomena of superconductivity and CDW existence, we aim to visualize the vortex lattice in a field cooled YBCO superconductor through characterization of the CDWs present in the vortices.
DOI: 10.15468/dl.sn9tcq
title: Occurrence Download

description: A dataset containing 332 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Culex perexiguus Theobald, 1903"
 ]
}

 The dataset includes 332 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000405-250226093636041/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jdnqwg
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Russowia sogdiana (Bunge) B.Fedtsch."
 ]
}

 The dataset includes 16 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000011-250226125047203/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5mcv6p
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coffea vohemarensis A.P.Davis & Rakotonas."
 ]
}

 The dataset includes 16 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000013-250226125047203/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3at5y3
title: Occurrence Download

description: A dataset containing 2984 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "Geometry POLYGON((9.51811 44.89783,10.10182 44.89783,10.10182 45.22026,9.51811 45.22026,9.51811 44.89783))",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 2984 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000008-250226125047203/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nvhh95
title: Occurrence Download

description: A dataset containing 1058 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex korshinskyi Kom."
 ]
}

 The dataset includes 1058 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000001-250226125047203/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ndqpn6
title: Occurrence Download

description: A dataset containing 15132 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is ARC-PPRI: Collection of Southern African bees (1800-2007)"
 ]
}

 The dataset includes 15132 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000012-250226125047203/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vxumqn
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pentanema cernuum (Dalzell) Y.Ling"
 ]
}

 The dataset includes 30 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000404-250226093636041/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25h6vc
title: Occurrence Download

description: A dataset containing 1133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((26.45347 16.09441,178.54653 16.09441,178.54653 76.90559,26.45347 76.90559,26.45347 16.09441))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Stipa krylovii Roshev."
 ]
}

 The dataset includes 1133 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000005-250226125047203/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dqar9a
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is RIO GRaNdE dO SUL",
 "TaxonKey is Aegolius harrisii (Cassin, 1849)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000004-250226125047203/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tnnbsw
title: Occurrence Download

description: A dataset containing 1928 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Callithrix jacchus (Linnaeus, 1758)"
 ]
}

 The dataset includes 1928 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000276-250226125047203/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xe3gke
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Lithocarpus echinulatus Soepadmo"
 ]
}

 The dataset includes 19 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000268-250226125047203/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13651117
title: Supplementary files from paper "Revisiting the evolution and function of NIP2 paralogs in the Rhynchosporium spp. complex"

description: This dataset contains additional files related with the "Revisiting the evolution and function of NIP2 parologs in the Rhynchosporium spp. complex" paper. The second version contains four additional files: EarlGrey_annotation.bed, The_RIPper_annotation.gff3, Figure_S7_alignment.fasta, and WAI_strains_attributes.xlsx

Folder 1: R script for differential gene expression analysis and RPKM calculation (EdgeR_WAI453.html) including the input files (gene_count_matrix.csv and for_RPKM_featureCounts.csv).

Folder 2: Genome assembly (R.communeWAI453_20contigs.fasta), gene annotation of R. commune WAI453 (R.communeWAI453.gff3), transposable elements annotation of R. commune WAI453 (EarlGrey_annotation.bed), and RIP-affected region annotation of R. commune WAI453 (The_RIPper_annotation.gff3).

Folder 3: Sequence of NIP2 and NLP paralogs from R. commune global populations and R. commune sister species used in this study (nip2.1.all.fasta-nlp4.all.fasta) the summary of presence-absence polymorphism of all NIP2 and NLP genes in R. commune and three R. commune sister species (gene_summary.csv), alignment of NIP2 and NLP genes (Figure_S7_alignment.fasta), and attributes of all R. commune WAI strains used in this study (WAI_strains_attributes.xlsx).

Folder 4: Pdb files of structural prediction of NIP2 proteins generated by AlphaFold 2 (nip2.1.pdb, nip2.3.pdb, and nip2.6.pdb).

Folder 5: A python script to parse local blast result into fasta file (BLASTtoGFF_multiple.py).
DOI: 10.5281/zenodo.13651118
title: Supplementary files from paper "Revisiting the evolution and function of NIP2 parologs in the Rhynchosporium spp. complex"

description: This dataset contains additional files related with the "Revisiting the evolution and function of NIP2 parologs in the Rhynchosporium spp. complex" paper.

Folder 1: R script for differential gene expression analysis and RPKM calculation (EdgeR_WAI453.html) including the input files (gene_count_matrix.csv and for_RPKM_featureCounts.csv).

Folder 2: Genome assembly (R.communeWAI453_20contigs.fasta) and annotation of R. commune WAI453 (R.communeWAI453.gff3).

Folder 3: Sequence of NIP2 and NLP paralogs from R. commune global populations and R. commune sister species used in this study (nip2.1.all.fasta-nlp4.all.fasta) and the summary of presence-absence polymorphism of all NIP2 and NLP genes in R. commune and three R. commune sister species (gene_summary.csv).

Folder 4: Pdb files of structural prediction of NIP2 proteins generated by AlphaFold 2 (nip2.1.pdb, nip2.3.pdb, and nip2.6.pdb).

Folder 5: A python script to parse local blast result into fasta file (BLASTtoGFF_multiple.py).
DOI: 10.5281/zenodo.14871345
title: Supplementary files from paper "Revisiting the evolution and function of NIP2 paralogs in the Rhynchosporium spp. complex"

description: This dataset contains additional files related with the "Revisiting the evolution and function of NIP2 parologs in the Rhynchosporium spp. complex" paper. The second version contains four additional files: EarlGrey_annotation.bed, The_RIPper_annotation.gff3, Figure_S7_alignment.fasta, and WAI_strains_attributes.xlsx

Folder 1: R script for differential gene expression analysis and RPKM calculation (EdgeR_WAI453.html) including the input files (gene_count_matrix.csv and for_RPKM_featureCounts.csv).

Folder 2: Genome assembly (R.communeWAI453_20contigs.fasta), gene annotation of R. commune WAI453 (R.communeWAI453.gff3), transposable elements annotation of R. commune WAI453 (EarlGrey_annotation.bed), and RIP-affected region annotation of R. commune WAI453 (The_RIPper_annotation.gff3).

Folder 3: Sequence of NIP2 and NLP paralogs from R. commune global populations and R. commune sister species used in this study (nip2.1.all.fasta-nlp4.all.fasta) the summary of presence-absence polymorphism of all NIP2 and NLP genes in R. commune and three R. commune sister species (gene_summary.csv), alignment of NIP2 and NLP genes (Figure_S7_alignment.fasta), and attributes of all R. commune WAI strains used in this study (WAI_strains_attributes.xlsx).

Folder 4: Pdb files of structural prediction of NIP2 proteins generated by AlphaFold 2 (nip2.1.pdb, nip2.3.pdb, and nip2.6.pdb).

Folder 5: A python script to parse local blast result into fasta file (BLASTtoGFF_multiple.py).
DOI: 10.15468/dl.mgh29a
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithocarpus eichleri (Wenz.) A.Camus"
 ]
}

 The dataset includes 32 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000277-250226125047203/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14907940
title: NREL Cambium 2020

description: Cambium datasets contain modeled hourly data for a range of possible futures of the U.S. electricity sector, with metrics designed to be useful for forward-looking analysis and decision support.

Cambium is annually updated and expands on the metrics reported in NREL's Standard Scenarios—another annually released set of projections of how the U.S. electric sector could evolve across a suite of potential futures.

The 2020 Cambium release includes two products:

The full 2020 Cambium datasets;
NREL reports describing the scenarios, defining metrics and methods, describing major changes since the last release, and discussing intended uses and limitations of the dataset. Archived from 
https://www.nrel.gov/analysis/cambium.html

This archive contains raw input data for the Public Utility Data Liberation (PUDL)
software developed by Catalyst Cooperative. It is
organized into Frictionless
Data Packages. For additional information about this data and PUDL, see the
following resources:


  
The PUDL Repository on GitHub
  
PUDL Documentation
  
Other Catalyst Cooperative data archives
DOI: 10.5281/zenodo.14907941
title: NREL Cambium 2020

description: Cambium datasets contain modeled hourly data for a range of possible futures of the U.S. electricity sector, with metrics designed to be useful for forward-looking analysis and decision support.

Cambium is annually updated and expands on the metrics reported in NREL's Standard Scenarios—another annually released set of projections of how the U.S. electric sector could evolve across a suite of potential futures.

The 2020 Cambium release includes two products:

The full 2020 Cambium datasets;
NREL reports describing the scenarios, defining metrics and methods, describing major changes since the last release, and discussing intended uses and limitations of the dataset. Archived from 
https://www.nrel.gov/analysis/cambium.html

This archive contains raw input data for the Public Utility Data Liberation (PUDL)
software developed by Catalyst Cooperative. It is
organized into Frictionless
Data Packages. For additional information about this data and PUDL, see the
following resources:


  
The PUDL Repository on GitHub
  
PUDL Documentation
  
Other Catalyst Cooperative data archives
DOI: 10.15468/dl.t8wwrp
title: Occurrence Download

description: A dataset containing 204 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Inula caspica F.K.Blum ex Ledeb."
 ]
}

 The dataset includes 204 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000274-250226125047203/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14920246
title: NREL Cambium 2021

description: Cambium datasets contain modeled hourly data for a range of possible futures of the U.S. electricity sector, with metrics designed to be useful for forward-looking analysis and decision support.

Cambium is annually updated and expands on the metrics reported in NREL's Standard Scenarios—another annually released set of projections of how the U.S. electric sector could evolve across a suite of potential futures.

The 2021 Cambium release includes two products:

The full 2021 Cambium datasets;
NREL reports describing the scenarios, defining metrics and methods, describing major changes since the last release, and discussing intended uses and limitations of the dataset. Archived from 
https://www.nrel.gov/analysis/cambium.html

This archive contains raw input data for the Public Utility Data Liberation (PUDL)
software developed by Catalyst Cooperative. It is
organized into Frictionless
Data Packages. For additional information about this data and PUDL, see the
following resources:


  
The PUDL Repository on GitHub
  
PUDL Documentation
  
Other Catalyst Cooperative data archives
DOI: 10.5281/zenodo.14920247
title: NREL Cambium 2021

description: Cambium datasets contain modeled hourly data for a range of possible futures of the U.S. electricity sector, with metrics designed to be useful for forward-looking analysis and decision support.

Cambium is annually updated and expands on the metrics reported in NREL's Standard Scenarios—another annually released set of projections of how the U.S. electric sector could evolve across a suite of potential futures.

The 2021 Cambium release includes two products:

The full 2021 Cambium datasets;
NREL reports describing the scenarios, defining metrics and methods, describing major changes since the last release, and discussing intended uses and limitations of the dataset. Archived from 
https://www.nrel.gov/analysis/cambium.html

This archive contains raw input data for the Public Utility Data Liberation (PUDL)
software developed by Catalyst Cooperative. It is
organized into Frictionless
Data Packages. For additional information about this data and PUDL, see the
following resources:


  
The PUDL Repository on GitHub
  
PUDL Documentation
  
Other Catalyst Cooperative data archives
DOI: 10.15468/dl.bar69p
title: Occurrence Download

description: A dataset containing 1116 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithocarpus edulis (Makino) Nakai"
 ]
}

 The dataset includes 1116 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000273-250226125047203/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.22g223
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthoprasium integrifolium (Benth.) Ryding",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 16 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000286-250226125047203/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hewnfm
title: Occurrence Download

description: A dataset containing 247 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acantholimon lycopodioides (Girard) Boiss.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 247 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000279-250226125047203/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.