cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.c0kt5/2
title: Supplemental Table 2

description: Mean spine length/calyx diameter values for all examined species of Aorocrinus.
DOI: 10.5061/dryad.c0kt5/3
title: Supplemental Table 3

description: Mean spine length/calyx diameter values of central spine, C-ray marginal spine, and E-ray marginal spine for all examined species of Dorycrinus.
DOI: 10.5061/dryad.c0kt5/4
title: Supplemental Table 4

description: Mean trait values for each time bin for convexity and spine length values.
DOI: 10.5061/dryad.dh53m/1
title: data

description: Sequence data for all genes and all individuals in the study
DOI: 10.5061/dryad.f1338/1
title: Raw data

description: Data includes both infected and non-infected hosts. Note that, except for the analysis of susceptibility, only infected individuals were included in the analyses. These data are a subset of a larger dataset published previously in Vale PF, Wilson AJ, Best A, Boots M, Little TJ. (2011) Epidemiological, evolutionary, and coevolutionary implications of context-dependent parasitism. The American Naturalist 177:510-521.
DOI: 10.5061/dryad.f5t28/10
title: MUSK_cline

description: ClineFit 2.0a input file for MUSK sequences
DOI: 10.5061/dryad.f5t28/11
title: mtDNAcline

description: ClineFit 2.0a input file for Cyt b sequences
DOI: 10.5061/dryad.f5t28/12
title: IRF2_cline

description: ClineFit 2.0a input file for IRF2 sequences
DOI: 10.5061/dryad.f5t28/13
title: Structure input file

description: Structure input file for 4 loci. The order of the loci in the file are: MUSK, IRF2, Myo2, Cyt b.
DOI: 10.5061/dryad.f5t28/8
title: crest_length_cline

description: ClineFit 2.0a input file for crest length measurements
DOI: 10.5061/dryad.f5t28/9
title: MYO_cline

description: ClineFit 2.0a input file for Myo2 sequences
DOI: 10.5061/dryad.fd31n/2
title: SNP_table_DN_and_AP_sample_list

description: Population or species of origin for samples in SNP_table_DN_and_AP.txt. D = dune, N = nondune, A = Helianthus annuus, P = H. petiolaris.
DOI: 10.5061/dryad.g3mh0/1
title: 1Spoonbill_adult_chick_diet

description: File containing diet composition of Spoonbill adults and chicks extracted from faecal material.
DOI: 10.5061/dryad.g3mh0/2
title: 2Spoonbill_diet_multiple_years

description: Diet composition of Spoonbills extracted from faecal material collected in the period 1998-2010.
DOI: 10.5061/dryad.kh466/2
title: Microsatellite data file

description: Microsatellite data by individual as used in the contemporary population structure analysis. IndividualID: individual identifier. Site: mountain name_low/high altitude. Latitude, longitude: sampling location for individual. Altitude(m): altitude of sampling location. BFG(number): genotype at named locus. NA: data not available.
DOI: 10.5061/dryad.kh466/5
title: Temperature data file

description: Air temperature data collected every two hours, by site used for the contemporary population structure analysis. Date, Time: when air temperature was recorded.Temperature in degrees centigrade by site.Site names: mountain name_low/high altitude
DOI: 10.5061/dryad.kh466/6
title: Phylogeography site location file

description: Locations of sample collection within Scotland for the phylogeographic analyses including site name, latitude and longitude
DOI: 10.5061/dryad.mm1d7/1
title: Masse_appendix

description: Quantitative characters used for statistical approache
DOI: 10.5061/dryad.n5rd6/1
title: Simulation Raw Output
DOI: 10.5061/dryad.n5rd6/2
title: Code

description: Scripts used to simulate data in R v.3.1.0. Contains two R scripts. Peterson&Kay_Prior Selfing.R simulates prior self-fertilization, and Peterson&Kay_Delayed Selfing.R simulates delayed self-fertilization. See article for details.
DOI: 10.5061/dryad.n7080/1
title: In(3R)P and Nf1 genotypes in the D. melanogaster 2005 clinal collection (Figure1_data)

description: Genotyping data for the cosmopolitan inversion 3RP, In(3R)P and Nf1 genotypes in Drosophila melanogaster populations collected along the east coast of Australia in 2005.
DOI: 10.5061/dryad.nm290/1
title: File S1

description: 1) AlphaDrop: executable for Linux2) macs: MaCS executable for linux3) msformatter: MaCS executable for linux4) Seed.txt: a file containing a random seed for initialising AlphaDrop5) RunMacs.sh: a shell script called by AlphaDrop when it runs MaCS6) AlphaDropSpec.txt: the specification file for AlphaDrop7) Pedigree.txt: an example externally supplied pedigree file8) MaCsSimulationParameters.xlsx: an excel sheet with which MaCS parameters can be calculated9) Ne100.sh: example of what to put into RunMacs.sh (Ne100 population of Hickey et al., 2011 Genetics Selection Evolution)10) Ne1000.sh: example of what to put into RunMacs.sh (Ne1000 population of Hickey et al., 2011 Genetics Selection Evolution)
DOI: 10.5061/dryad.q1nc0/2
title: duskycoords

description: Text file of spatial coordinates used in BAPS analysis for five northern dusky salamander populations.
DOI: 10.5061/dryad.q31f8/7
title: IM_CYTB_NWP_BLS

description: IM input file for comparing NW Pacific lineage with Balsfjord population.
DOI: 10.5061/dryad.q8758/4
title: Eye_size_measurements_main

description: Eye, face and tibia measurements of focal strains of D. mauritiana, D. simulans, and D. melanogaster.
DOI: 10.5061/dryad.q8758/5
title: FaceTradeOff

description: Data for ratio of eye and face sizes for female D. mauritiana (TAM16), D. simulans (yvf), and D. melanogaster (M36).
DOI: 10.5061/dryad.qf6t5/1
title: bold salix samples

description: species, specimen, location lists
DOI: 10.5061/dryad.qf6t5/2
title: SALIX_matK

description: matK sequence alignment
DOI: 10.5061/dryad.qf6t5/3
title: SALIX_rbcL

description: rbcL sequence alignment
DOI: 10.5061/dryad.qf6t5/4
title: SALIX_rpoB

description: rpoB sequence alignment
DOI: 10.5061/dryad.r6s20/1
title: Performance data for Sedum album plants in a paired-plant experiment

description: The present file contains data on vegetative and reproductive performance traits (shoot and panicle number) measured on Sedum album plants, paired with a genetically different or identical individual in a 4-year garden experiment. The paired individuals in two-genotype trays differed in anthocyanin pigmentation (green vs. red) to allow separation of plants during data collection. The data were used to estimate direct and indirect genetic effects on plant performance.
DOI: 10.5061/dryad.rd304/2
title: Tyler_et_al_genemapper_standards

description: Genemapper output for the standards used to create a standard curve for each triad. Female.ID: A unique ID number given to each female, here used to identify triads.  Plex: Samples were screened with either individual markers or as plexes (details of microsatellite screening conditions are given in the supporting information ‘S2_Suppinfo’).  Dye: The dyes used in the microsatellite screening. Blue (B), Green (G) or Yellow (Y).  Allele1 / Allele2: The unique allele identified for each male in the triad.  Size1 / Size2:  Peak height of an allele.  Area1 / Area2: Peak area of an allele.  Standard: The percentage of DNA from the focal male added to the mix of DNA from both males.
DOI: 10.5061/dryad.sb432/5
title: drought infection

description: Code to analyze mycorrhizal infection
DOI: 10.5061/dryad.sr534/1
title: Supplementary Material
DOI: 10.5061/dryad.st020/7
title: 09S97

description: This zipped file contains longitudinal fruit images of each F2 SM x GBL plant. Population 09S97
DOI: 10.5061/dryad.st020/8
title: Images _each recombinant family

description: This zipped files contains longitudinal fruit images of each F2-F3 recombinant family
DOI: 10.5061/dryad.tt28qk6f/1
title: Lartillot&Delsuc-Evolution_78mammals

description: Concatenation of 17 protein-coding nuclear genes for 78 mammals in interleaved nexus format. Each individual gene dataset has been filtered by codon using Gblocks prior to concatenation.
DOI: 10.5061/dryad.tt28qk6f/2
title: Lartillot&Delsuc-Evolution_78mammals_intree

description: Phylogenetic usertree for 78 mammals in Newick format. Phylogenetic relationships in this tree followed the recent litterature on placental mammal phylogenetics.
DOI: 10.5061/dryad.tt28qk6f/3
title: Lartillot&Delsuc-Evolution_73placentals

description: Concatenation of 17 protein-coding nuclear genes for 73 placentals in interleaved nexus format. This dataset was obtained by extracting placental taxa from the largest 78 mammals dataset.
DOI: 10.5061/dryad.tt28qk6f/4
title: Lartillot&Delsuc-Evolution_73placentals_intree

description: Phylogenetic usertree for 73 placentals used for performing all analyses with the 73 placentals dataset. Phylogenetic relationships in this tree followed the recent literature on placental mammal phylogenetics.
DOI: 10.5061/dryad.0hj6g/1
title: MICROS_&_RFLPFINAL2new copy

description: Raw data for microsatellite loci and RFLP-derived ND1 haplotypes. Excel spreadsheet, msats in standard 2-column format.  Corresponding ND1 sequence data available in EMBL (Accn No.s HF586486 – HF586505)
DOI: 10.5061/dryad.1q88j/1
title: Plot_Resource_Environments

description: Classification of sample plots by resource environment. Column headings are: Plot number (first digit is watershed number, 1 or 3); Moisture (soil moisture availability class), and Aspect (aspect class). Moisture = Moist, Mesic, or Xeric. Aspect = Northerly, Southerly, or Intermediate (intermediate aspects were not analyzed for this attribute).
DOI: 10.5061/dryad.2n545/1
title: appendix

description: Online appendices
DOI: 10.5061/dryad.2n545/2
title: M501
DOI: 10.5061/dryad.2n545/3
title: M336
DOI: 10.5061/dryad.2n545/4
title: M520
DOI: 10.5061/dryad.2n545/6
title: M767
DOI: 10.5061/dryad.30932/1
title: Paustralis_EST_subtraction_library
DOI: 10.5061/dryad.589ft/1
title: Characteristics of membrane feeding study blood donors and mosquito infections

description: host = id of the host. readouts) from QT-NASBA into gametocyte density. ttp = time to positivity readout from QT-NASBA used to generate gametocyte density estimate. age = age of blood donor. asexual = asexual parasite density of blood donor (estimated using microscopy). no_dissected = number of mosquitoes dissected to determine mosquito infection. no_infected = number of mosquitoes dissected with observable oocysts
DOI: 10.5061/dryad.60630/2
title: Photometric genome size scoring
DOI: 10.5061/dryad.60630/3
title: Photometic and flow cytometric genome size scores
DOI: 10.5061/dryad.60630/4
title: Quantification of 18SrDNA abundance
DOI: 10.5061/dryad.63q03/1
title: Measurements of tadpoles

description: Measurements in millimeters of tadpoles.
DOI: 10.5061/dryad.68m52/1
title: CTMax Data

description: Estimates of Critical Thermal Maxima for seven species of Microhylid frogs.  Includes number of animals measured, mean CTmax, and SD of CTmax
DOI: 10.5061/dryad.68m52/2
title: Empirical_Microclimate_Data

description: Paired empirical measurements of open-air and under-log temperature daily maxima and minima.  These data were used to create the linear microclimate model.
DOI: 10.5061/dryad.6bs31/4
title: Vinesetal_data_4th Jan

description: The data used in the statistical analyses
DOI: 10.5061/dryad.6j9r7/1
title: dataset

description: Dataset of anatomical data used for comparative analyses. Details and definition of abbreviations can be found in the manuscript.
DOI: 10.5061/dryad.6rp18/1
title: Dickson_et_al_data

description: File containing all data used in Dickson et al. (2014) Ecology paper entitled "Height and clonality traits determine plant community responses to fertilization"
DOI: 10.5061/dryad.6vr28/1
title: Seabed habitat maps

description: The files contain maps and ArcGIS shapefiles of the seabed habitats and biotopes at the Cape Rodney – Okakari Point Marine Reserve (also called Goat Island) adjacent to Leigh Marine Laboratory, North Island, New Zealand.  There are two maps: The first was digitized from a map published by Ayling, A.M., Cumming, A., Ballantine, W.J. (1981). Map of shore and sub-tidal habitats of the Cape Rodney-Okakari Point Marine Reserve, North Island, New Zealand in 3 sheets, scale 1:2000. Department of Lands and Survey, Wellington, New Zealand. The second was remapped in 2006. A full description of the 2006 methods and comparison of both maps is available in Leleu K, Remy-Zephir B., Grace R., Costello M.J. 2012. Mapping habitats in a marine reserve showed how a 30-year trophic cascade altered ecosystem structure. Biological Conservation , in press. The maps were created to quantify the area of seabed habitats and biotopes in the reserve and adjacent areas in each map.
DOI: 10.5061/dryad.7137r/26
title: bird1451_pair9_son1_all_songs
DOI: 10.5061/dryad.7137r/27
title: bird1449_pair9_son2_all_songs
DOI: 10.5061/dryad.73n69m01/1
title: Aythya fuligula genotypes

description: Microsatellite genotype dataset (“Aythya fuligula genotypes.xlsx”)
DOI: 10.5061/dryad.76dc8/1
title: All reef patches shape file

description: This .shp file shows the centroids of all reef patches within 35 km of Curlew. Suggested projection: Datum (WGS84); Projection (UTM Zone 16N).
DOI: 10.5061/dryad.7j68h/1
title: Final.Data

description: Excel file containing color and life history data.
DOI: 10.5061/dryad.7sh4r/1
title: Kulmuni et al_ Supplementary Data set S1

description: CSP sequences from whole genome sequencing (WSG) projects AEVX01, ADTU01, AEAB01, AEAC01, ADOQ01, ADIH01 and AEAQ01 of the ants Acromyrmex echinatior, Atta cephalotes, Camponotus floridanus, Harpegnathos saltator, Linepithema humile, Pogonomyrmex barbatus and Solenopsis invicta, respectively.
DOI: 10.5061/dryad.80d7p/1
title: ECM IB4+ t=0 expressed genes reps1-7

description: Data showing genes detected on microarrays for IB4-expressing dorsal root ganglion neurons at t=0 (smapled immediately after selection protocol). See Read-me file for details. Only genes detected above background are listed; of 144 ECM genes on the arrays, only 36 genes were expressed by both neuron populations.
DOI: 10.5061/dryad.8nc6v/2
title: Kflavicollis_msat_data+mtDNA_haplo

description: Microsatellite dataset for the 11 colonies of Kalotermes flavicollis (Isoptera:Kalotermitidae) + corresponding mitochondrial DNA haplotypes
DOI: 10.5061/dryad.9mj12/1
title: Piglet MRI Atlas Collection

description: This includes the MRI data sets of the averaged brain for the 4-week old piglet, prior probability maps, and regions of interest files.
DOI: 10.5061/dryad.bb8r6/1
title: Alignment of all clone sequences generated in the course of this study

description: FASTA file comprising 915 SFV int sequences.
DOI: 10.5061/dryad.cc7sg/1
title: Werner&Homeier_FE-2014-00426_DataDryad

description: 2 spreadsheets:a) data on litter decomposition and b) all remainder data (N = 12) presented in the article
DOI: 10.5061/dryad.d1nd3/2
title: Critical size data

description: Metadata used for to calculate the critical size (Figure 2, Figure 3 & supplementary figure 1) Variables in the file include: temp = rearing temperature for the flies. larval = larval weight at starvation. pupariate = pupariation status. ttp =  time to pupariation from starvation in hours. pupal = pupal weight. eclose = eclosion status
DOI: 10.5061/dryad.d5h1n/1
title: Supplemental Tables and Figures

description: This file contains 8 supplemental Tables and 13 supplemental Figures in total. All the Tables and Figure captions are in a single word file, respectively.
DOI: 10.5061/dryad.d5h1n/2
title: Data sets

description: This file contains data sets assembled in this study.
DOI: 10.5061/dryad.dj31p/2
title: FIG_SUP_2_Subset_trees

description: Supplementary Figure 2. Four representative multi-locus phylogenies based on the subset. Color branches represent flatfish lineages (cyan, Pleuronectoidei; orange, Psettodoidei).
DOI: 10.5061/dryad.f468j/1
title: Code, scripts, and data files

description: Archive of C code, R scripts, and data files.
DOI: 10.5061/dryad.f5th5/1
title: Occurrence_data

description: GPS coordinates of the occurrence records used in building MaxEnt models of the four Taiwanese bat species.
DOI: 10.5061/dryad.f5th5/2
title: Bioclimatic_layers_current

description: The eight selected bioclimatic layers for current conditions used in building MaxEnt models of the four Taiwanese bat species. An additional layer where Taiwan is masked (119.9-122.1ºE, 21.8-25.5ºN) is provided.
DOI: 10.5061/dryad.f5th5/3
title: Bioclimatic_layers_ccsm21ka

description: The eight selected bioclimatic layers for past conditions (21 ka, CCSM model) used in projecting MaxEnt models of the four Taiwanese bat species. An additional layer where a broader geographic space is masked (111.3-126.3ºE, 19.2-28.4ºN) is provided.
DOI: 10.5061/dryad.f5th5/4
title: Bioclimatic_layers_miroc21ka

description: The eight selected bioclimatic layers for past conditions (21 ka, MIROC model) used in projecting MaxEnt models of the four Taiwanese bat species. An additional layer where a broader geographic space is masked (111.3-126.3ºE, 19.2-28.4ºN) is provided.
DOI: 10.5061/dryad.f79jb/1
title: Supplementary Table

description: Astarte spp. and Lirophora shell length, completeness of drill hole, outer bore hole diameter, and position of drill hole on shell.
DOI: 10.5061/dryad.g3n23/1
title: MammalData

description: Data on number of groups of mammals observed per transect. Numbers are given for each of four guilds (Large primates, Medium primates, Rodents, and Browsers). Six study sites are included: Forests A, B, and C are each divided into one hunted and one protected site. In each site four transects were surveyed.
DOI: 10.5061/dryad.g3n23/2
title: TreeData

description: Data on numbers of mature trees per transect section. Trees are divied into three dispersal modes (dispersed by primates, other animals, or by abiotic means). Each forest (A,B,C) has two study sites (one hunted, one protected), and each site has four 1 km transects divided into 200 m sections.
DOI: 10.5061/dryad.g3n23/3
title: SeedlingsIntactData

description: Data on numbers of seedlings per 5x5 m plot. These data are from intact plots, with unmanipulated densities. Seedling species are divied into three dispersal modes (dispersed by primates, other animals, or by abiotic means). Each forest (A,B,C) has two study sites (one hunted, one protected), and each site has four 1 km transects along which two plots (A and B) are randomly placed.
DOI: 10.5061/dryad.g3n23/4
title: SeedlingsClearedData

description: Data on number of seedlings per 5x5 m plots, one year after the plot was cleared of all vegetation. Seedling species are divied into three dispersal modes (dispersed by primates, other animals, or by abiotic means). Each forest (A,B,C) has two study sites (one hunted, one protected), and each site has four 1 km transects along which one plot is randomly placed.
DOI: 10.5061/dryad.jn14d/1
title: Griffiths2013Genotypes2010ChignikLake

description: Single-nucleotide polymorphism (SNP) genotypes for juvenile sockeye salmon (Oncorhynchus nerka) collected in 2010 in Chignik Lake, AK.
DOI: 10.5061/dryad.nn952/1
title: Preliminary Analysis

description: Contains (1) BEAST XML input file, (2) empirical tree distribution (1,000 trees) (GTR+gamma substitution model, uncorrelated relaxed clock model, skygrid tree prior), and (3) nexus format sequence alignment.
DOI: 10.5061/dryad.nn952/2
title: Sequence data details and alignments for data sets A to D

description: Contains (1) table with accession numbers, isolate names, sampling years, country/location of sampling and (2) nexus format sequence alignments.
DOI: 10.5061/dryad.nn952/3
title: Phylogeographic models and empirical tree distributions for data sets A to D

description: Contains (1) the BEAST XML input file used to generate Figure 1; (2) BEAST XML files used to generate the phylogeographic analyses with an asymmetric diffusion model in Tables S2-S5; and (3) empirical tree distributions (2,000 trees) (GTR+gamma substitution model, uncorrelated relaxed clock model, skygrid tree prior).
DOI: 10.5061/dryad.nn952/4
title: Exponential-logistic coalescent model, robust counting and randomisation procedure

description: Contains (1) the BEAST XML input file for the exponential-logistic coalescent model used to estimate the epidemiological transition time, (2) the BEAST XML input file for the robust counting analysis (Fig. 3 and Figs. S5-S6), and (3) the BEAST XML input file corresponding to the randomisation procedure shown in Fig. S4.
DOI: 10.5061/dryad.q31f8/8
title: Distance matrix for the MDS ordination

description: Pairwise interpopulation ΦST distance matrix of trans-Arctic lineage populations for MDS ordination.
DOI: 10.5061/dryad.q8758/6
title: Ommatidia counts_size

description: Ommatidia counts for focal strains of D. mauritiana, D. simulans, and D. melanogaster.
DOI: 10.5061/dryad.q8758/7
title: Opsin_qPCR

description: Measurements of opsin expression in D. mauritiana, D. simulans, and D. melanogaster.
DOI: 10.5061/dryad.qf6t5/5
title: SALIX_rpoC1

description: rpoC1 sequence alignment
DOI: 10.5061/dryad.qf6t5/6
title: SALIX_trnH

description: trnH-psbA sequence alignment
DOI: 10.5061/dryad.qf6t5/7
title: SALIX_psbK

description: psbK-psbI sequence alignment
DOI: 10.5061/dryad.qf6t5/8
title: SALIX_atpF

description: atpF-atpH sequence alignment
DOI: 10.5061/dryad.qf6t5/9
title: SALIX_COI

description: COI sequence alignment
DOI: 10.5061/dryad.r6209/2
title: 960_LaMariquita_fitnes

description: Inbreeding depression and seed data for the populations from La Mariquita
DOI: 10.5061/dryad.s6h18/3
title: lateral_plate_morphology

description: Lateral plate size and genotypes for putative lateral plate QTL and Eda. Hab-habitat, Morph-lateral plate morph (see Methods for morph classification), body.d-body depth, rat.4-ratio of lateral plate height at fourth myomere and body depth.
DOI: 10.5061/dryad.sb432/2
title: blub pop resids for final measures

description: SAS code to analyze the BLUPs for plant growth characters of size and flowering.
DOI: 10.5061/dryad.sb432/4
title: Drought Data infection

description: Data of how mycorrhizally infected each non-drought stressed plant was.
DOI: 10.5061/dryad.sb432/6
title: end of experiment final measures Weedy3 Oct 2011

description: Code to analyze the full experiment drought response
DOI: 10.5061/dryad.sb432/8
title: May 2011 full experiment blups

description: Data sheet of BLUP outputs
DOI: 10.5061/dryad.t8q7t/2
title: Data for estimation of somatic mutation

description: Proportion of flowers setting fruit from autonomously-pollinated inflorescences (Wa), and geitonogamously-pollinated inflorescences (Wg).  Also included is the autogamy depression measure.  These measurements were paired as described in the article.  Clone number refers to a specific clone.  There were several Wa and Wg measurements for each clone.  The measure D is the autogamy depression measurement, calculated for each paired autogamous and geitonogamous inflorescence cross.
DOI: 10.5061/dryad.104t1/3
title: Timing data, laying parasites

description: Average time (days) spent in the nest before incubation start, for the eggs of 13 females that laid eggs parasitically before laying in their own nest (laying parasites, see Fig. 5). For each female, “Observed time” is the average time her eggs spent in a nest before incubation start. “One-nest time” is the corresponding average time per egg, if the female had instead laid all her eggs in one nest, with the same timing between her successive eggs. These data were used for the regression analysis described in the paper (Fig. 5).
DOI: 10.5061/dryad.14pp7/1
title: dVHLModel

description: Coordinate file (PDB format) of the model structure of the Drosophila VHL protein.
DOI: 10.5061/dryad.1q88j/13
title: Cover_Herb_Total

description: Plot-level values of total (summed) cover over the study period (1979 to 2008) of all herbaceous species (see Appendix A for species classification). Column headings are: Plot number (first digit is watershed number, 1 or 3); the remainining columns are sampling dates (1979, 1980, 1983, 1987, 1990, 1994, 1997, 2002, and 2008. Units are % (values can exceed 100%).