cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.106731.v1
title: Only hungry flies learn odor-sugar association

description: Drosophila melanogaster flies were shown to learn to associate odor with sugar presentation. The performance during the test was shown to be dependent on the statiation state of the animal (krashes et al. 2009). The dependency of satiation during training has been postulated from different experiments. However, the difference in motivation during the test could have explained these results. I performed an experiment to tackle this question directly, using the conditioning paradigm published earlier (Colomb et al. 2009). Flies were starved (or not) before training. After training, they were put on food to cancel the difference in satiation state between the two groups, before beeing starved again before the test. Flies sated during training show no memory at all, while control flies show normal memory retention scores two days after training. Colomb J, Kaiser L, Chabaud M-A, Preat T (2009) Parametric and genetic analysis of Drosophila appetitive long-term memory and sugar motivation. Genes, brain, and behavior 8: 407–15. doi:10.1111/j.1601-183X.2009.00482.x Krashes MJ, DasGupta S, Vreede A, White B, Armstrong JD, et al. (2009) A neural circuit mechanism integrating motivational state with memory expression in Drosophila. Cell 139: 416–27. doi:10.1016/j.cell.2009.08.035
DOI: 10.6084/m9.figshare.106728
title: Raw data for Figure 4B: Pre-stimulation with IFN-γ, TNF-α and IL-1β does not enhance the immunosuppressive effect of Mesoangioblasts/HIDEMs

description: HIDEMs/mesoangioblasts were left untreated or were stimulated with IFN-γ, TNF-α or IL-1β (20ng/ml) for 24h before setting up co-cultures with CFSE labelled PBMC and anti CD3/CD28 beads. After 6 days cells were harvested and surface stained for CD3 and 7AAD before analysis of CFSE dilution. CD3+CFSE diluted cell numbers were calculated using counting beads as before. Experiments were carried out in duplicates. n=4.
DOI: 10.6084/m9.figshare.106729
title: Raw data for Figure 5: The presence of IDO and PGE-2 inhibitors reduce the suppression of T cell proliferation by Mesoangioblasts/HIDEMs

description: CFSE labelled PBMCs were stimulated with anti CD3/CD28 beads as before in the presence of HIDEMs/mesoangioblasts and inhibitors of IDO and Cox-2, (1-Methyl-L-trypyophan (1MT) (0.5mM) and NS-398 (1.0 uM) respectively, or both. On day 6 cells were harvested and stained with anti-CD3 and 7AAD. Cells were gated on live CD3+ populations and analysed for CFSE dilution and the numbers of cells undergoing CFSE dilution were enumerated using counting beads. Experiments were carried out in duplicates. n=4.
DOI: 10.6084/m9.figshare.106794.v2
title: Ventral visual stream

description: This figure is inspired by DiCarlo & Cox (2007) beautiful representation of transformations occuring in the ventral visual stream. Note that this is only a cartoon version of processing occuring in the visual system. In particular, whether objects are recognized in LOC is debatable. I created this image for my TEDxVilnius talk (http://youtu.be/uYgQClEfYuI).
DOI: 10.6084/m9.figshare.106729.v1
title: Raw data for Figure 5: The presence of IDO and PGE-2 inhibitors reduce the suppression of T cell proliferation by Mesoangioblasts/HIDEMs

description: CFSE labelled PBMCs were stimulated with anti CD3/CD28 beads as before in the presence of HIDEMs/mesoangioblasts and inhibitors of IDO and Cox-2, (1-Methyl-L-trypyophan (1MT) (0.5mM) and NS-398 (1.0 uM) respectively, or both. On day 6 cells were harvested and stained with anti-CD3 and 7AAD. Cells were gated on live CD3+ populations and analysed for CFSE dilution and the numbers of cells undergoing CFSE dilution were enumerated using counting beads. Experiments were carried out in duplicates. n=4.
DOI: 10.6084/m9.figshare.106726
title: Raw data for Figure 3C: Mesoangioblasts and HIDEMs do not interfer with T cell activation

description: CFSE labelled PBMCs (5 x 104/well) were stimulated with anti CD3/CD28 beads (1 x 104/well) (P+B) in the presence or absence of HIDEMs/mesoangioblasts at HIDEM/mesoangioblast:PBMC = 1:4 ratio. Cells were harvested on day 3, 4, 5 or 6 and analysed for CFSE dilution and expression of CD25 and CD69. The number of CD3+7AAD- cells expressing CD25 or CD69 using counting beads and the % of CD25+ and CD69+ cells were calculated from the data. Experiments were carried out in duplicates. n=2.
DOI: 10.6084/m9.figshare.106727
title: Raw data for Figure 4A: Neutralising antibodies against IFN-γ and TNF-α reduce the immunosuppressive capacity of Mesoangioblasts/HIDEMs

description: CFSE labelled PBMCs were stimulated with anti-CD3/CD28 beads in the presence of HIDEMs/mesoangioblasts (1:4) and neutralising antibodies against IFN-γ and TNF-α or irrelevant isotype control antibody (0.5, 1.0 and 2.0 µg/ml) or recombinant IL-1RA (0.5, 1.0 and 2.0 µg/ml). Cells were harvested on day 6 and stained with anti-CD3 and 7AAD. After gating on CD3+7AAD- the number of CFSE diluting cells were enumerated using counting beads. Experiments were carried out in duplicates. n=4.
DOI: 10.6084/m9.figshare.106725
title: Raw data for Figure 3B: Mesoangioblasts and HIDEMs suppress T cell proliferation in a dose dependent manner

description: CFSE labelled PBMCs (5 x 104/well) were stimulated with anti CD3/CD28 beads (1 x 104/well) (P+B) in the presence or absence of HIDEMs/mesoangioblasts at decreasing ratios (HIDEM/mesoangioblast:PBMC). On day 6 cells were harvested and stained with anti-CD3 antibody and 7AAD, and analysed by flow cytometry. CFSE dilution was analysed on gated CD3+ 7AAD- cells. The percentage of CD3+CFSE dividing cells was calculated for each group and compared to the positive control (P+B), followed by plotting against HIDEM/mesoangioblast:PBMC ratios. Experiments were carried out in duplicates. n=2
DOI: 10.6084/m9.figshare.106726.v1
title: Raw data for Figure 3C: Mesoangioblasts and HIDEMs do not interfer with T cell activation

description: CFSE labelled PBMCs (5 x 104/well) were stimulated with anti CD3/CD28 beads (1 x 104/well) (P+B) in the presence or absence of HIDEMs/mesoangioblasts at HIDEM/mesoangioblast:PBMC = 1:4 ratio. Cells were harvested on day 3, 4, 5 or 6 and analysed for CFSE dilution and expression of CD25 and CD69. The number of CD3+7AAD- cells expressing CD25 or CD69 using counting beads and the % of CD25+ and CD69+ cells were calculated from the data. Experiments were carried out in duplicates. n=2.
DOI: 10.6084/m9.figshare.106727.v1
title: Raw data for Figure 4A: Neutralising antibodies against IFN-γ and TNF-α reduce the immunosuppressive capacity of Mesoangioblasts/HIDEMs

description: CFSE labelled PBMCs were stimulated with anti-CD3/CD28 beads in the presence of HIDEMs/mesoangioblasts (1:4) and neutralising antibodies against IFN-γ and TNF-α or irrelevant isotype control antibody (0.5, 1.0 and 2.0 µg/ml) or recombinant IL-1RA (0.5, 1.0 and 2.0 µg/ml). Cells were harvested on day 6 and stained with anti-CD3 and 7AAD. After gating on CD3+7AAD- the number of CFSE diluting cells were enumerated using counting beads. Experiments were carried out in duplicates. n=4.
DOI: 10.6084/m9.figshare.106723
title: Raw data for Figure 2B: Change of surface marker expression of Mesoangioblasts/HIDEMs upon pro-inflammatory stimulation

description: HIDEMs and mesoangioblasts were stimulated with IFN-γ, TNF-α or IL-1β (20ng/ml) for 24h. Cells were trypsinized and washed, followed by surface staining for HLA-ABC, HLA-DR, CD40, PD-L1 or fluorochrome matched isotype controls and analysis by flow cytometry. Experiments were carried out in duplicates. n=4. Median fluorescence intensities of the markers were examined, and were shown as Mean ± SE.
DOI: 10.6084/m9.figshare.106724
title: Raw data for Figure 2C: HIDEMs and mesoangioblasts fail to induce T cell proliferation in vitro

description: CFSE labelled PBMCs were stimulated with anti CD3/CD28 beads (PBMC+B) as a positive control. HIDEMs and mesoangioblasts were stimulated with IFN-γ, TNF-α or IL-1β (20ng/ml) for 24h. Non-stimulated or cytokine stimulated HIDEMs/mesoangioblasts (ratio 1:4) were then co-cultured with PBMC for 6 days. CD3+ CFSE labelled 7AAD- cells were enumerated using flow cytometry and counting beads. Experiments were carried out in duplicates. n=4.
DOI: 10.6084/m9.figshare.106725.v1
title: Raw data for Figure 3B: Mesoangioblasts and HIDEMs suppress T cell proliferation in a dose dependent manner

description: CFSE labelled PBMCs (5 x 104/well) were stimulated with anti CD3/CD28 beads (1 x 104/well) (P+B) in the presence or absence of HIDEMs/mesoangioblasts at decreasing ratios (HIDEM/mesoangioblast:PBMC). On day 6 cells were harvested and stained with anti-CD3 antibody and 7AAD, and analysed by flow cytometry. CFSE dilution was analysed on gated CD3+ 7AAD- cells. The percentage of CD3+CFSE dividing cells was calculated for each group and compared to the positive control (P+B), followed by plotting against HIDEM/mesoangioblast:PBMC ratios. Experiments were carried out in duplicates. n=2
DOI: 10.6084/m9.figshare.106718
title: Gaussian Job Archive for C28H58

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106723.v1
title: Raw data for Figure 2B: Change of surface marker expression of Mesoangioblasts/HIDEMs upon pro-inflammatory stimulation

description: HIDEMs and mesoangioblasts were stimulated with IFN-γ, TNF-α or IL-1β (20ng/ml) for 24h. Cells were trypsinized and washed, followed by surface staining for HLA-ABC, HLA-DR, CD40, PD-L1 or fluorochrome matched isotype controls and analysis by flow cytometry. Experiments were carried out in duplicates. n=4. Median fluorescence intensities of the markers were examined, and were shown as Mean ± SE.
DOI: 10.6084/m9.figshare.106724.v1
title: Raw data for Figure 2C: HIDEMs and mesoangioblasts fail to induce T cell proliferation in vitro

description: CFSE labelled PBMCs were stimulated with anti CD3/CD28 beads (PBMC+B) as a positive control. HIDEMs and mesoangioblasts were stimulated with IFN-γ, TNF-α or IL-1β (20ng/ml) for 24h. Non-stimulated or cytokine stimulated HIDEMs/mesoangioblasts (ratio 1:4) were then co-cultured with PBMC for 6 days. CD3+ CFSE labelled 7AAD- cells were enumerated using flow cytometry and counting beads. Experiments were carried out in duplicates. n=4.
DOI: 10.6084/m9.figshare.106700
title: Sleepwalking in Istanbul

description: A gender-based analysis on famous Turkish writer Ahmet Hamdi Tanpınar's novel Huzur, questioning hegemonic masculinity as the base for the belated Turkish modernity.
DOI: 10.6084/m9.figshare.106718.v1
title: Gaussian Job Archive for C28H58

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106700.v1
title: Sleepwalking in Istanbul

description: A gender-based analysis on famous Turkish writer Ahmet Hamdi Tanpınar's novel Huzur, questioning hegemonic masculinity as the base for the belated Turkish modernity.
DOI: 10.6084/m9.figshare.106695
title: Evidence for layered growth of „100... textured diamond films

description: The growth of diamond films synthesized by the hot filament chemical vapor deposition method has<br>been studied by scanning tunneling microscopy ͑STM͒. The smooth ͑100͒ faces of micron-sized<br>diamond crystallites were found to exhibit pyramidal shaped architecture at the nano level. The<br>STM data for chemical vapor deposited diamond is analyzed in the light of recently developed<br>dynamical scaling approach. The value of the scaling exponent ␣ Х0.85 signifies a growth primarily<br>driven by the transport of reacting species on the surface rather than molecular diffusion in gas<br>phase.
DOI: 10.6084/m9.figshare.106695.v1
title: Evidence for layered growth of „100... textured diamond films

description: The growth of diamond films synthesized by the hot filament chemical vapor deposition method has<br>been studied by scanning tunneling microscopy ͑STM͒. The smooth ͑100͒ faces of micron-sized<br>diamond crystallites were found to exhibit pyramidal shaped architecture at the nano level. The<br>STM data for chemical vapor deposited diamond is analyzed in the light of recently developed<br>dynamical scaling approach. The value of the scaling exponent ␣ Х0.85 signifies a growth primarily<br>driven by the transport of reacting species on the surface rather than molecular diffusion in gas<br>phase.
DOI: 10.6084/m9.figshare.106696
title: Gradual transitions in morphology of diamond films grown by using N2 admixtures of CH4+H2 gas in a hot filament assisted chemical vapour deposition system

description: A study of the evolution of morphology of diamond films grown as a function of N2 gas additions to the CH4+H2 precursor in an HF-<br>CVD system is presented. With the increase of admixture of N2 fraction, in contrast to earlier studies, the morphology was observed first to<br>gradually change from {111}-faceted crystallites texture to that of an intermediate cubo-octahedral crystallite texture and then gradually but<br>finally to transform completely into that of {100}-faceted crystallites. The threshold nitrogen concentration, [N2]thr, required to bring about<br>the said transition in morphology was much larger than it was reported previously. Moreover, the morphology transition required a larger<br>[N2]thr when a large fraction of methane was employed. Further additions of nitrogen, that just exceeded the [N2]thr, resulted in growth of<br>films containing slightly bigger {100}-multi-layered grains or isolated planar {100}-platelets. For extremely large nitrogen additions, the<br>growth of nanocrystalline or amorphous carbon films was observed. The N2 additions more than 50 vol.% did not yield any deposition.<br>Raman scattering and photoluminescence measurements were used respectively for characterizing the quality and nitrogen doping in the<br>films. These results are attributed to the possible catalytic role of atomic nitrogen at the growing surface.<br><br>
DOI: 10.6084/m9.figshare.106696.v1
title: Gradual transitions in morphology of diamond films grown by using N2 admixtures of CH4+H2 gas in a hot filament assisted chemical vapour deposition system

description: A study of the evolution of morphology of diamond films grown as a function of N2 gas additions to the CH4+H2 precursor in an HF-<br>CVD system is presented. With the increase of admixture of N2 fraction, in contrast to earlier studies, the morphology was observed first to<br>gradually change from {111}-faceted crystallites texture to that of an intermediate cubo-octahedral crystallite texture and then gradually but<br>finally to transform completely into that of {100}-faceted crystallites. The threshold nitrogen concentration, [N2]thr, required to bring about<br>the said transition in morphology was much larger than it was reported previously. Moreover, the morphology transition required a larger<br>[N2]thr when a large fraction of methane was employed. Further additions of nitrogen, that just exceeded the [N2]thr, resulted in growth of<br>films containing slightly bigger {100}-multi-layered grains or isolated planar {100}-platelets. For extremely large nitrogen additions, the<br>growth of nanocrystalline or amorphous carbon films was observed. The N2 additions more than 50 vol.% did not yield any deposition.<br>Raman scattering and photoluminescence measurements were used respectively for characterizing the quality and nitrogen doping in the<br>films. These results are attributed to the possible catalytic role of atomic nitrogen at the growing surface.<br><br>
DOI: 10.6084/m9.figshare.106697
title: Charge Injection Across Self-Assembly Monolayers in Organic Field-Effect Transistors: Odd-Even Effects

description: We investigate the role of self-assembly monolayers in modulating the response of organic field-<br>effect transistors. Alkanethiol monolayers of chain length n are self-assembled on the source and drain<br>electrodes of pentacene field-effect transistors. The charge carrier mobility μ exhibits large fluctuations<br>correlated with odd-even n. For n &lt; 8, μ increases by 1 order of magnitude owing to the decrease of the<br>hole injection barrier and the improved molecular order at the organic-metallic interface. For n g 8, μ<br>decays exponentially with an inverse decay length ) 0.6 Å-1. Our results show that (i) charge injection<br>across the interface occurs by through-bond tunneling of holes mediated by the alkanethiol layer; (ii) in the<br>long-chain regime, the charge injection across the alkanethiol monolayer completely governs the transistor<br>response; (iii) the transistor is a sensitive gauge for probing charge transport across single monolayers.<br>The odd-even effect is ascribed to the anisotropic coupling between the alkanethiol terminal σ bond and<br>the HOMO level of ordered pentacene molecules.
DOI: 10.6084/m9.figshare.106697.v1
title: Charge Injection Across Self-Assembly Monolayers in Organic Field-Effect Transistors: Odd-Even Effects

description: We investigate the role of self-assembly monolayers in modulating the response of organic field-<br>effect transistors. Alkanethiol monolayers of chain length n are self-assembled on the source and drain<br>electrodes of pentacene field-effect transistors. The charge carrier mobility μ exhibits large fluctuations<br>correlated with odd-even n. For n &lt; 8, μ increases by 1 order of magnitude owing to the decrease of the<br>hole injection barrier and the improved molecular order at the organic-metallic interface. For n g 8, μ<br>decays exponentially with an inverse decay length ) 0.6 Å-1. Our results show that (i) charge injection<br>across the interface occurs by through-bond tunneling of holes mediated by the alkanethiol layer; (ii) in the<br>long-chain regime, the charge injection across the alkanethiol monolayer completely governs the transistor<br>response; (iii) the transistor is a sensitive gauge for probing charge transport across single monolayers.<br>The odd-even effect is ascribed to the anisotropic coupling between the alkanethiol terminal σ bond and<br>the HOMO level of ordered pentacene molecules.
DOI: 10.6084/m9.figshare.106688
title: Gaussian Job Archive for C12H10

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106689
title: Gaussian Job Archive for C12H10

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106688.v1
title: Gaussian Job Archive for C12H10

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106689.v1
title: Gaussian Job Archive for C12H10

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106657
title: Gaussian Job Archive for C4H10

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106658
title: Gaussian Job Archive for C17H36

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106656
title: Gaussian Job Archive for C4H10

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106657.v1
title: Gaussian Job Archive for C4H10

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106656.v1
title: Gaussian Job Archive for C4H10

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106658.v1
title: Gaussian Job Archive for C17H36

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106652
title: Gaussian Job Archive for C12H8Cl2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106653
title: Gaussian Job Archive for C12H12ClNO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106649
title: Gaussian Job Archive for C2H6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106652.v1
title: Gaussian Job Archive for C12H8Cl2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106653.v1
title: Gaussian Job Archive for C12H12ClNO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106643
title: Gaussian Job Archive for C12H14Cl2N2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106649.v1
title: Gaussian Job Archive for C2H6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106642
title: Simulated county-level maize yields, 1979-2012

description: This dataset contains simulations for county-level maize yields in the conterminous US for the year 2012 as well as hindcasts for maize yield from 1979-2011 for use in validation and analysis. The zero lead time forecasts for 2012 are estimated from simulations of pDSSAT, a gridded high-resolution version of the detailed biophysical crop growth model CERES-Maize (as part of DSSAT). The simulations were conducted over December 2012 and published to figshare in January 2013 in anticipation of the release of the official statistics on county-level US maize yields from USDA NASS in February 2013.
DOI: 10.6084/m9.figshare.106642.v1
title: Simulated county-level maize yields, 1979-2012

description: This dataset contains simulations for county-level maize yields in the conterminous US for the year 2012 as well as hindcasts for maize yield from 1979-2011 for use in validation and analysis. The zero lead time forecasts for 2012 are estimated from simulations of pDSSAT, a gridded high-resolution version of the detailed biophysical crop growth model CERES-Maize (as part of DSSAT). The simulations were conducted over December 2012 and published to figshare in January 2013 in anticipation of the release of the official statistics on county-level US maize yields from USDA NASS in February 2013.
DOI: 10.6084/m9.figshare.106639
title: Simulated state-level maize yields, 1979-2012

description: This dataset contains simulated county-level maize yields in the conterminous US for the year 2012 as well as hindcasts for maize yield from 1979-2011 for use in validation and analysis. The 2012 values are zero lead time forecasts estimated from simulations of pDSSAT, a gridded high-resolution version of the detailed biophysical crop growth model CERES-Maize (as part of DSSAT). The simulations were conducted in December 2012 and published to figshare in January 2013 in anticipation of the release of the official statistics on county-level US maize yields from USDA NASS in February 2013.
DOI: 10.6084/m9.figshare.106640
title: Simulated state-level maize production total, 1979-2012

description: This dataset contains simulations for state-level maize production totals in the conterminous US for the year 2012 as well as hindcasts for maize production totals from 1979-2011 for use in validation and analysis. The zero lead time forecasts for 2012 are estimated from simulations of pDSSAT, a gridded high-resolution version of the detailed biophysical crop growth model CERES-Maize (as part of DSSAT). The simulations were conducted in December 2012 and published to figshare in January 2013 in anticipation of the release of the official statistics on county-level US maize yields from USDA NASS in February 2013.