cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/2tugvy
title: A new species of Diglyphus Walker (Hymenoptera, Eulophidae) from China, with notes on its biology and a key to the Chinese species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wan, Wei-Jie, Hansson, Christer, Guo, Jian-Yang, Liu, Wan-Xue (2025): A new species of Diglyphus Walker (Hymenoptera, Eulophidae) from China, with notes on its biology and a key to the Chinese species. ZooKeys 1257: 327-337, DOI: 10.3897/zookeys.1257.159532AbstractA new species of Diglyphus Walker, D. albifemur Liu, Hansson & Guo, sp. nov., is described based on extensive material from China collected from 2016 to 2024. The entire material included here has been reared from agromyzid leafminers (Diptera, Agromyzidae), mainly from Phytomyza vitalbae Kaltenbach, mining leaves of Clematis orientalis L. The new species is morphologically similar to the European species D. clematidis Navone & Hansson and shares the same host plant genus (Clematis) but can be distinguished by several diagnostic features detailed herein. Mitochondrial cytochrome c oxidase subunit I (COI) sequences of the new species are provided. The identification key to Chinese Diglyphus species by Zhu et al. (2000) was extended to incorporate the new species and all other Chinese species described since that publication.
DOI: 10.6084/m9.figshare.28927709
title: A single-cell transcriptomic dataset of enterocyte-specific HHEX knockdown in the Drosophila larval midgut

description: This project provides public access to all reproducible scripts, raw matrix, and annotated integrated matrices associated with the research publication, including the following:

1. Analysis Pipeline Scripts
 00.geth5ad.py: Raw data preprocessing and conversion to AnnData format
 01.qc.py: Quality control for single-cell data
 02.scvi.py: Multi-library integration using the scVI algorithm
 03.clu.py: Cell clustering and subpopulation annotation
 04.cell_changes.py: Statistical analysis of cell abundance variations
2. Raw Data Files
 Ctrl-1.zip: Raw matrices for Control Sample 1 (barcodes.tsv.gz, features.tsv.gz, matrix.mtx.gz)
 Ctrl-2.zip: Raw matrices for Control Sample 2 (barcodes.tsv.gz, features.tsv.gz, matrix.mtx.gz)
 KD-1.zip: Raw matrices for Knockdown Sample 1 (barcodes.tsv.gz, features.tsv.gz, matrix.mtx.gz)
 KD-2.zip: Raw matrices for Knockdown Sample 2 (barcodes.tsv.gz, features.tsv.gz, matrix.mtx.gz)
3. Annotated Integrated Matrix
 NP1_HHEX_anno.h5ad: Integrated matrix in standard AnnData format 
 1. Cell type annotations: .obs['anno']
 2. Sample identifiers: .obs['samples']
 3. Raw expression matrix: .layers['counts_X']
DOI: 10.6084/m9.figshare.28927709.v1
title: A single-cell transcriptomic dataset of enterocyte-specific HHEX knockdown in the Drosophila larval midgut

description: This project provides public access to all reproducible scripts, raw matrix, and annotated integrated matrices associated with the research publication, including the following:

1. Analysis Pipeline Scripts
 00.geth5ad.py: Raw data preprocessing and conversion to AnnData format
 01.qc.py: Quality control for single-cell data
 02.scvi.py: Multi-library integration using the scVI algorithm
 03.clu.py: Cell clustering and subpopulation annotation
 04.cell_changes.py: Statistical analysis of cell abundance variations
2. Raw Data Files
 Ctrl-1.zip: Raw matrices for Control Sample 1 (barcodes.tsv.gz, features.tsv.gz, matrix.mtx.gz)
 Ctrl-2.zip: Raw matrices for Control Sample 2 (barcodes.tsv.gz, features.tsv.gz, matrix.mtx.gz)
 KD-1.zip: Raw matrices for Knockdown Sample 1 (barcodes.tsv.gz, features.tsv.gz, matrix.mtx.gz)
 KD-2.zip: Raw matrices for Knockdown Sample 2 (barcodes.tsv.gz, features.tsv.gz, matrix.mtx.gz)
3. Annotated Integrated Matrix
 NP1_HHEX_anno.h5ad: Integrated matrix in standard AnnData format 
 1. Cell type annotations: .obs['anno']
 2. Sample identifiers: .obs['samples']
 3. Raw expression matrix: .layers['counts_X']
DOI: 10.15468/dl.cn8gvt
title: Occurrence Download

description: A dataset containing 10682 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 {
 "or" : [
 "Geometry POLYGON((116.11668 39.59317,116.77839 39.59317,116.77839 40.06629,116.11668 40.06629,116.11668 39.59317))",
 "Geometry POLYGON((116.06951 39.54264,116.84099 39.54264,116.84099 40.08287,116.06951 40.08287,116.06951 39.54264))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dendrocopos major"
 ]
}

 The dataset includes 10682 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064578-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/uvqmv4
title: New species of Metynnis Cope, 1878 (Characiformes: Characidae) from the rio Paraguay basin, Mato Grosso State, Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Pavanelli, Carla S., Ota, Rafaela P., Petry, Paulo (2009): New species of Metynnis Cope, 1878 (Characiformes: Characidae) from the rio Paraguay basin, Mato Grosso State, Brazil. Neotropical Ichthyology 7 (2): 141-146, DOI: 10.1590/S1679-62252009000200002, URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252009000200002&lng=en&tlng=enA new species of Metynnis is described from the rio Cuiabá and rio Manso drainages, in the upper rio Paraguay basin, Mato Grosso State, Brazil. This laterally compressed species, which rarely exceeds 140 mm in SL, is readily distinguished from other members of the genus Metynnis by having 100-110 lateral-line scales, 48-56 rows of scales above the lateral line, 32-36 circumpeduncular scales, 22-24 gill rakers, 38 vertebrae, singular color pattern, and relatively smaller snout, width, and head length.Uma nova espécie de Metynnis é descrita das drenagens dos rios Cuiabá e Manso, bacia do alto rio Paraguai, Estado do Mato Grosso, Brasil. Essa espécie de corpo comprimido lateralmente, que raramente excede os 140 mm de comprimento padrão, é prontamente diagnosticada dos outros membros do gênero Metynnis por possuir 100-110 escamas na linha lateral, 48-56 séries de escamas acima da linha lateral, 32-36 escamas circumpedunculares, 22-24 rastros branquiais, 38 vértebras, padrão de colorido distinto, e comprimento do focinho, largura e comprimento da cabeça relativamente menores.
DOI: 10.15468/vt9gyy
title: Eupithecia conquesta Tabell & Junnilainen, a new species from Cyprus (Lepidoptera, Geometridae, Larentiinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Tabell, Jukka, Junnilainen, Jari, Sihvonen, Pasi (2024): Eupithecia conquesta Tabell & Junnilainen, a new species from Cyprus (Lepidoptera, Geometridae, Larentiinae). Nota Lepidopterologica 47: 11-18, DOI: http://dx.doi.org/10.3897/nl.47.114137, URL: http://dx.doi.org/10.3897/nl.47.114137
DOI: 10.15468/s78k4e
title: Begonia pachypoda L. Kollmann & Peixoto (Begoniaceae), a new species from Brazil currently known in cultivation as Begonia leathermaniae O’Reilly & Kareg.

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kollmann, Ludovic Jean Charles, Peixoto, Ariane Luna (2013): Begonia pachypoda L. Kollmann & Peixoto (Begoniaceae), a new species from Brazil currently known in cultivation as Begonia leathermaniae O’Reilly & Kareg. Candollea 68 (1): 93-97, DOI: 10.15553/c2013v681a13AbstractKOLLMANN, L. J. C. & A. L. PEIXOTO (2013). Begonia pachypoda L. Kollmann & Peixoto (Begoniaceae), a new species from Brazil currently known in cultivation as Begonia leathermaniae O’Reilly & Kareg. Candollea 68: 93-97. In English, English and French abstracts.Begonia pachypoda L. Kollmann & Peixoto (Begoniaceae), a new species known only from Alegre in the Atlantic Forest of the state of Espírito Santo in Brazil, is described. We established that it is currently cultivated and misidentified under the name Begonia leathermaniae O’Reilly & Kareg. Description, illustration and comments about geographic distribution of this new species are provided. It is morphologically related to Begonia aconitifolia A. DC. and Begonia platanifolia Schott. The name Begonia leathermaniae must be used only for another species from Bolivia.
DOI: 10.15468/sj4wqr
title: Resurrection of Plocamium pusillum Sonder (Plocamiaceae, Rhodophyta) from Australia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Huisman, John M., Saunders, Gary W. (2021): Resurrection of Plocamium pusillum Sonder (Plocamiaceae, Rhodophyta) from Australia. Cryptogamie, Algologie 20 (14): 231-239, DOI: 10.5252/cryptogamie-algologie2021v42a14, URL: http://dx.doi.org/10.5252/cryptogamie-algologie2021v42a14ABSTRACTMolecular analyses have indicated that several Australian taxa previously identified as the red alga Plocamium cartilagineum do not group with that species as known from its northern hemisphere type locality. One of these species-level genetic groups corresponds precisely with Plocamium pusillum, a species described by Sonder in 1845 based on Preiss specimens from south-western Australia, but regarded as a heterotypic synonym of P. cartilagineum in recent morphology-based treatments. A specimen of P. pusillum in the Melbourne Herbarium (MEL) has been examined and designated as lectotype; its morphology agrees with recently collected specimens included in molecular analyses and is clearly shown to differ from authentic P. cartilagineum. Plocamium pusillum is therefore resurrected and is characterized genetically and morphologically.
DOI: 10.15468/ztvves
title: First discovery of the Neotropical species Brachymeria trinidadensis (Hymenoptera: Chalcididae, Brachymeriinae) in India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Binoy, C., Santhosh, S., Nasser, M. (2022): First discovery of the Neotropical species Brachymeria trinidadensis (Hymenoptera: Chalcididae, Brachymeriinae) in India. Zootaxa 5092 (4): 429-441, DOI: 10.11646/zootaxa.5092.4.2AbstractBrachymeria trinidadensis (Narendran & Varghese) (Hymenoptera: Chalcididae), described originally from Trinidad, West Indies, is newly reported from the state of Kerala, India, as a likely accidental introduction. A possible parasitoid association with an unidentified Bembix (Hymenoptera: Crabronidae) larva feeding on an unidentified species of Tabanidae (Diptera) is suggested based on collection of the female near the Bembix tunnel. The species is redescribed based on the Kerala female and it and the female holotype of B. trinidadensis are both illustrated with colour photographs. Brachymeria trinidadensis is considered a ‘long tailed’ species of Brachymeria based on females of the species having a conspicuously elongate syntergum, but is removed from the subconica species group of Brachymeria based on the head lacking a transverse carina across the vertex posterior of the median ocellus. Brachymeria laetiliae Burks is also removed from the subconica species group based on the head lacking the transverse carina. Type material of the long tailed species B. grisselli (Narendran & Varghese), B. kraussi (Narendran & Varghese), B. aculeata (Walker) and B. producta (Olivier) are illustrated by photographs. Variation of B. trinidadensis from other long tailed (syntergum) congeners is also provided.
DOI: 10.15468/jbaa92
title: Dendrobium jizhuyeense (Orchidaceae; Epidendroideae) a new species from China: evidence from morphology and DNA

description: This dataset contains the digitized treatments in Plazi based on the original journal article Liang, Meng, Chang, Ling-Ling, Wang, Jia-Xin, Zhang, Yu, Liu, Lei, Zhang, Ze, Li, Zhen-Jian (2024): Dendrobium jizhuyeense (Orchidaceae; Epidendroideae) a new species from China: evidence from morphology and DNA. Phytotaxa 645 (1): 77-84, DOI: 10.11646/phytotaxa.645.1.7, URL: http://dx.doi.org/10.11646/phytotaxa.645.1.7AbstractDendrobium jizhuyeense, a new species from Sichuan, China, is described and illustrated in this study. Morphological study indicates that D. jizhuyeense is similar to D. hancockii, but differs in having oblong sepals, obovate-elliptic petals and an obovate lip, including a smaller stem, smaller leaf and different flower type. Molecular analyses based on nuclear and plastid markers indicate that D. jizhuyeense is closely related to D. hancockii, belonging to section Holochrysa.
DOI: 10.15468/d6hyqp
title: Molecular phylogeny and morphology reveal a new Hymenochaete species (Hymenochaetaceae, Basidiomycota) from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Li, Yunchao, Chen, Minglan, Xiao, Wenyuan, Zhang, Junzhong, Zhao, Changlin (2024): Molecular phylogeny and morphology reveal a new Hymenochaete species (Hymenochaetaceae, Basidiomycota) from China. Phytotaxa 664 (3): 159-171, DOI: 10.11646/phytotaxa.664.3.1, URL: https://doi.org/10.11646/phytotaxa.664.3.1AbstractWood-inhabiting fungi play an essential role in forest ecosystems as an important group of decomposers, which are found in living trees, dead standing trees, decorticated trunks, fallen branches, as well as manufactured wood. A new wood-inhabiting fungus Hymenochaete sinensis, belonging to the family Hymenochaetaceae, is described and illustrated based on the morphological characteristics and molecular data. Hymenochaete sinensis sp. nov. is characterized by annual, resupinate basidiomata with aurantium to coconut brown to brownish black hymenial surface, a monomitic hyphal system having the simple-septate with distinctly thick-walled generative hyphae, and ellipsoid to broadly ellipsoid basidiospores measuring as 4–5 × 2.5–3.5 µm. The phylogenetic analyses based on ITS+nLSU rDNA sequences confirmed that the new species belongs to the genus Hymenochaete. The ITS phylogenetic tree revealed that the new taxon is closely related to species of Hymenochaete longispora and H. quercicola.
DOI: 10.6084/m9.figshare.30428197
title: Discerning Single Atoms on TiO2 Nanoplatelets Using STEM-based Atomically-Resolved Secondary Electron Techniques

description: High-resolution STEM-ADF and STEM-SE images and related EDS mapping
DOI: 10.6084/m9.figshare.30428197.v1
title: Discerning Single Atoms on TiO2 Nanoplatelets Using STEM-based Atomically-Resolved Secondary Electron Techniques

description: High-resolution STEM-ADF and STEM-SE images and related EDS mapping
DOI: 10.6084/m9.figshare.28555088
title: Constructing the Human Brain Metabolic Connectome with MR Spectroscopic Imaging Reveals Cerebral Biochemical Organization

description: Due to the high dimensionality of neuroimaging data, we are providing the raw data used to generate every figure in the manuscript. Some data are provided in NIFTI format, while other, more lightweight plots are available in NPZ format, which can be loaded in a Python environment and contain all the necessary metadata to generate those plots. The files have been compressed into their respective FigX folders corresponding to the figures they generate.
DOI: 10.6084/m9.figshare.28555088.v1
title: Constructing the Human Brain Metabolic Connectome with MR Spectroscopic Imaging Reveals Cerebral Biochemical Organization

description: Due to the high dimensionality of neuroimaging data, we are providing the raw data used to generate every figure in the manuscript. Some data are provided in NIFTI format, while other, more lightweight plots are available in NPZ format, which can be loaded in a Python environment and contain all the necessary metadata to generate those plots. The files have been compressed into their respective FigX folders corresponding to the figures they generate.
DOI: 10.15468/czrzyt
title: A new freshwater species of Pinnularia (Bacillariophyta) from Hunan Province, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Xu, San-Mei, Liu, Bing, Rioual, Patrick, Yi, Man-Qi, Ma, Yi-Dan (2024): A new freshwater species of Pinnularia (Bacillariophyta) from Hunan Province, China. PhytoKeys 237: 179-189, DOI: http://dx.doi.org/10.3897/phytokeys.237.116946, URL: http://dx.doi.org/10.3897/phytokeys.237.116946
DOI: 10.15468/xujv2u
title: First zoeal stage of the Indian Ocean hydrothermal vent crab, Austinograea rodriguezensis Tsuchida & Hashimoto, 2002 (Decapoda: Brachyura: Bythograeidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kihara, Terue Cristina, Clark, Paul F., Meyn, Klaas H. (2024): First zoeal stage of the Indian Ocean hydrothermal vent crab, Austinograea rodriguezensis Tsuchida & Hashimoto, 2002 (Decapoda: Brachyura: Bythograeidae). Zootaxa 5476 (1): 192-206, DOI: 10.11646/zootaxa.5476.1.18, URL: http://dx.doi.org/10.11646/zootaxa.5476.1.18AbstractFirst stage zoeas of the vent crab Austinograea rodriguezensis Tsuchida & Hashimoto, 2002 (Decapoda, Brachyura, Bythograeidae) were collected by a remotely operated vehicle from the Kairei Hydrothermal Vent, Central Indian Ridge, in January 2016 during the INDEX 2016 cruise of the French registered RV Pourquoi Pas? The zoeal appendages are illustrated using confocal laser scanning microscopy and described. A comparison between first stage zoeal morphology of Gandalfus yunohana (Takeda, Hashimoto & Ohta, 2000) and A. rodriguezensis is made and, although remarkably similar, they can be distinguished by dorsal pleonal spinulation. Tdhe number of possible zoeal stages of A. rodriguezensis is discussed and considered to be four. Several deep-water brachyuran zoea 1 have been described with distinct elongated dorsal carapace and pleonal spinulation, including A. rodriguezensis, G. yunohana, Calocarcinus africanus Calman, 1909, Dorhynchus thomsoni Thomson, 1873. These are compared with the zoeas of three species of Geryoninae Colosi, 1924 for which the larval phases are described. These geryonine crabs are also deep-water species, but their zoeas are only described with rostral, dorsal and lateral carapace spines and are without the elongated dorsal spinulation of the carapace and pleomeres. This is attributed to the fact these geryonines have an extensive distribution range compared to those of A. rodriguezensis, G. yunohana, C. africanus and D. thomsoni, which are restricted to discrete habitats. The elongated dorsal spinulation of the carapace and pleomeres of these latter four species is attributed to the fact that the length of these spines increases the effective size of these without extra cost of growth and help the dispersal of the zoeal stages. Videos of A. rodriguezensis female behaviour with respect to aeration of eggs and the subsequent hatching near vent plumes are provided as supplementary information.
DOI: 10.15468/k9y97t
title: Designation of a Neotype for Herpetoreas xenura (Wall, 1907) (Squamata: Serpentes: Natricidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Nguyen, Tan Van, Ray, Sumidh, David, Patrick, Mohapatra, Pratyush P. (2025): Designation of a Neotype for Herpetoreas xenura (Wall, 1907) (Squamata: Serpentes: Natricidae). Zootaxa 5620 (1): 196-200, DOI: 10.11646/zootaxa.5620.1.9, URL: https://doi.org/10.11646/zootaxa.5620.1.9
DOI: 10.15468/sdg7jk
title: A new freshwater amphipod (Amphipoda, Gammaridae) from the Fakilli Cave, Duezce Tuerkiye: Gammarus kunti sp. nov.

description: This dataset contains the digitized treatments in Plazi based on the original journal article Oezbek, Murat, Baytasoglu, Hazel, Aksu, Ismail (2023): A new freshwater amphipod (Amphipoda, Gammaridae) from the Fakilli Cave, Duezce Tuerkiye: Gammarus kunti sp. nov. Zoosystematics and Evolution 99 (2): 473-487, DOI: http://dx.doi.org/10.3897/zse.99.108048, URL: http://dx.doi.org/10.3897/zse.99.108048
DOI: 10.15468/vfunyx
title: A newly recorded species, Sergentia kizakiensis (Tokunaga, 1940) (Diptera: Chironomidae), from Oriental China with DNA barcode

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wang, Qian, Hai-Jun, Yu, Xin-Hua, Wang, Lin, Xiao-Long (2019): A newly recorded species, Sergentia kizakiensis (Tokunaga, 1940) (Diptera: Chironomidae), from Oriental China with DNA barcode. CHIRONOMUS Journal of Chironomidae Research 32 (32): 75-78, DOI: 10.5324/cjcr.v0i32.3322, URL: https://www.ntnu.no/ojs/index.php/chironomus/article/view/3322AbstractSergentia kizakiensis (Tokunaga, 1940) is newly recorded from Oriental China. Here, adult males are redescribed and illustrated. Additionally, we provide a DNA barcode of S. kizakiensis from China.
DOI: 10.15468/7jcu6t
title: A new slippery frog (Amphibia, Conrauidae, Conraua Nieden, 1908) from the Fouta Djallon Highlands, west-central Guinea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Neira-Salamea, Karla, Doumbia, Joseph, Hillers, Annika, Sandberger-Loua, Laura, Kouame, N'Goran G., Brede, Christian, Schaefer, Marvin, Blackburn, David C., Barej, Michael F., Roedel, Mark-Oliver (2022): A new slippery frog (Amphibia, Conrauidae, Conraua Nieden, 1908) from the Fouta Djallon Highlands, west-central Guinea. Zoosystematics and Evolution 98 (1): 23-42, DOI: http://dx.doi.org/10.3897/zse.98.76692, URL: http://dx.doi.org/10.3897/zse.98.76692
DOI: 10.15468/8summx
title: Phylloporus pruinatus, a new lamellate bolete from subtropical China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zhao, Kuan, Zeng, Nian-Kai, Han, Li-Hong, Gao, Xiao-Ye, Liu, Jian-Tao, Wu, Gang, Wang, Song- Hua, Gu, Bing (2018): Phylloporus pruinatus, a new lamellate bolete from subtropical China. Phytotaxa 372 (3): 212-220, DOI: 10.11646/phytotaxa.372.3.4, URL: http://dx.doi.org/10.11646/phytotaxa.372.3.4AbstractPhylloporus pruinatus is described as a new species characterized by its small basidiomata about 2–3 cm diam, a yellowish brown to reddish brown pileal surface covered with a thin white pruina, white to cream yellow context, whitish basal mycelium and small spores. Molecular phylogenetic analyses based on three gene makers (ITS, nrLSU and tef 1 -α) also confirmed it belongs to the genus Phylloporus and that it is distinct from any known species. Morphological illustrations and descriptions are provided.