cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1131991.v1
title: Morphogenetic and chemical stability of long-term maintained <i>Agrobacterium</i>-mediated transgenic <i>Catharanthus roseus</i> plants

description: Transgenic <i>Catharanthus roseus</i> plants (transgenic Dhawal [DT] and transgenic Nirmal [NT]) obtained from the <i>Agrobacterium tumefaciens</i> and <i>Agrobacterium</i><i>rhizognenes</i>-mediated transformations, respectively, have been maintained <i>in vitro</i> for 5 years. Plants were studied at regular intervals for various parameters such as plant height, leaf size, multiplication rate, alkaloid profile and presence of marker genes. DT plant gradually lost the <i>GUS</i> gene expression and it was not detected in the fifth year while NT plant demonstrated the presence of genes <i>rol</i><i>A</i>, <i>rol</i><i>B</i> and <i>rol</i><i>C</i> even in the fifth year, indicating the more stable nature of <i>Ri</i> transgene. Vindoline content in the DT was two times more than in non-transformed control plants. Alkaloid and tryptophan profiles were almost constant during the 5 years. The cluster analysis revealed that the DT plant is more close to the control Nirmal plant followed by NT plant.
DOI: 10.6084/m9.figshare.1130924
title: Functions for estimating aboveground biomass of birch in Norway

description: A suite of regional allometric aboveground biomass functions were derived for <i>Betula pubescens</i> and <i>Betula pendula</i> for Norwegian conditions. The data consisted of 67 trees sampled throughout Norway. A total of 14 component functions were developed for total aboveground, total stem, stemwood, stem bark, live crown, live branch, leaf, and dead branch biomass using combinations of diameter at breast height and height as predictor variables. Application of the derived functions to existing local southern Norwegian mountain birch and regional Swedish biomass datasets indicated an overall good predictive ability of the developed functions. However, the functions produced slight underestimates, suggesting that the respective birch populations had differing biomass allocation patterns. When the developed functions were applied to Norwegian National Forest Inventory data, they produced slightly higher biomass stock and stock change estimates than what is obtained using existing Swedish functions. The higher estimates were evident in the north, central, and western part of Norway, while estimates were similar in southeastern Norway where growing conditions are most similar to Swedish conditions. The analysis indicates that the derived functions are the best available for regional birch biomass stock and stock change estimation in Norway.
DOI: 10.6084/m9.figshare.1130922
title: Safety of the Japanese K-Car in a Real-World Low-Severity Frontal Collision

description: <b>Objective:</b> Kei-cars (K-cars), which are a tiny 660 cc mini-car class 3.4 m long or less, 1.48 m wide or less, and 2.00 m high or less, have become popular in Japan. To evaluate the safety of K-car drivers in frontal collisions, we retrospectively compared the severity of injuries suffered by drivers between K-cars and standard vehicles involved in frontal collisions in which at least one injury occurred.<b>Materials and Methods:</b> From in-depth data provided by the Institute for Traffic Accident Research and Data Analysis from 1993 to 2010, records for 1379 drivers aged 36.8 ± 15.6 years were collected for analysis.<b>Results:</b> Of the 1379 drivers, 1115 subjects were in standard vehicles and 264 were in K-cars. The mean delta <i>V</i> of the struck vehicle was 28.6 ± 15.6 km/h. After classifying the subjects according to seat belt use and air bag deployment, the background of the drivers and delta <i>V</i>, the injury severity scores (ISSs) and Abbreviated Injury Scale (AIS) scores were compared for all body regions. Under similar conditions, no significant differences in severity of injuries of the drivers were found between K-cars and standard vehicles.<b>Conclusions:</b> Although we are generally concerned that drivers of small vehicles suffer more severe injuries, our results suggest that, for real-world accidents, K-cars provide similar safety for drivers involved in frontal collisions as standard vehicles in low delta <i>V</i> impact conditions.
DOI: 10.6084/m9.figshare.1130924.v3
title: Functions for estimating aboveground biomass of birch in Norway

description: A suite of regional allometric aboveground biomass functions were derived for <i>Betula pubescens</i> and <i>Betula pendula</i> for Norwegian conditions. The data consisted of 67 trees sampled throughout Norway. A total of 14 component functions were developed for total aboveground, total stem, stemwood, stem bark, live crown, live branch, leaf, and dead branch biomass using combinations of diameter at breast height and height as predictor variables. Application of the derived functions to existing local southern Norwegian mountain birch and regional Swedish biomass datasets indicated an overall good predictive ability of the developed functions. However, the functions produced slight underestimates, suggesting that the respective birch populations had differing biomass allocation patterns. When the developed functions were applied to Norwegian National Forest Inventory data, they produced slightly higher biomass stock and stock change estimates than what is obtained using existing Swedish functions. The higher estimates were evident in the north, central, and western part of Norway, while estimates were similar in southeastern Norway where growing conditions are most similar to Swedish conditions. The analysis indicates that the derived functions are the best available for regional birch biomass stock and stock change estimation in Norway.
DOI: 10.6084/m9.figshare.1130922.v1
title: Safety of the Japanese K-Car in a Real-World Low-Severity Frontal Collision

description: <b>Objective:</b> Kei-cars (K-cars), which are a tiny 660 cc mini-car class 3.4 m long or less, 1.48 m wide or less, and 2.00 m high or less, have become popular in Japan. To evaluate the safety of K-car drivers in frontal collisions, we retrospectively compared the severity of injuries suffered by drivers between K-cars and standard vehicles involved in frontal collisions in which at least one injury occurred.<b>Materials and Methods:</b> From in-depth data provided by the Institute for Traffic Accident Research and Data Analysis from 1993 to 2010, records for 1379 drivers aged 36.8 ± 15.6 years were collected for analysis.<b>Results:</b> Of the 1379 drivers, 1115 subjects were in standard vehicles and 264 were in K-cars. The mean delta <i>V</i> of the struck vehicle was 28.6 ± 15.6 km/h. After classifying the subjects according to seat belt use and air bag deployment, the background of the drivers and delta <i>V</i>, the injury severity scores (ISSs) and Abbreviated Injury Scale (AIS) scores were compared for all body regions. Under similar conditions, no significant differences in severity of injuries of the drivers were found between K-cars and standard vehicles.<b>Conclusions:</b> Although we are generally concerned that drivers of small vehicles suffer more severe injuries, our results suggest that, for real-world accidents, K-cars provide similar safety for drivers involved in frontal collisions as standard vehicles in low delta <i>V</i> impact conditions.
DOI: 10.6084/m9.figshare.1130922.v3
title: Safety of the Japanese K-Car in a Real-World Low-Severity Frontal Collision

description: <b>Objective:</b> Kei-cars (K-cars), which are a tiny 660 cc mini-car class 3.4 m long or less, 1.48 m wide or less, and 2.00 m high or less, have become popular in Japan. To evaluate the safety of K-car drivers in frontal collisions, we retrospectively compared the severity of injuries suffered by drivers between K-cars and standard vehicles involved in frontal collisions in which at least one injury occurred.<b>Materials and Methods:</b> From in-depth data provided by the Institute for Traffic Accident Research and Data Analysis from 1993 to 2010, records for 1379 drivers aged 36.8 ± 15.6 years were collected for analysis.<b>Results:</b> Of the 1379 drivers, 1115 subjects were in standard vehicles and 264 were in K-cars. The mean delta <i>V</i> of the struck vehicle was 28.6 ± 15.6 km/h. After classifying the subjects according to seat belt use and air bag deployment, the background of the drivers and delta <i>V</i>, the injury severity scores (ISSs) and Abbreviated Injury Scale (AIS) scores were compared for all body regions. Under similar conditions, no significant differences in severity of injuries of the drivers were found between K-cars and standard vehicles.<b>Conclusions:</b> Although we are generally concerned that drivers of small vehicles suffer more severe injuries, our results suggest that, for real-world accidents, K-cars provide similar safety for drivers involved in frontal collisions as standard vehicles in low delta <i>V</i> impact conditions.
DOI: 10.6084/m9.figshare.1130922.v2
title: Safety of the Japanese K-Car in a Real-World Low-Severity Frontal Collision

description: <b>Objective:</b> Kei-cars (K-cars), which are a tiny 660 cc mini-car class 3.4 m long or less, 1.48 m wide or less, and 2.00 m high or less, have become popular in Japan. To evaluate the safety of K-car drivers in frontal collisions, we retrospectively compared the severity of injuries suffered by drivers between K-cars and standard vehicles involved in frontal collisions in which at least one injury occurred.<b>Materials and Methods:</b> From in-depth data provided by the Institute for Traffic Accident Research and Data Analysis from 1993 to 2010, records for 1379 drivers aged 36.8 ± 15.6 years were collected for analysis.<b>Results:</b> Of the 1379 drivers, 1115 subjects were in standard vehicles and 264 were in K-cars. The mean delta <i>V</i> of the struck vehicle was 28.6 ± 15.6 km/h. After classifying the subjects according to seat belt use and air bag deployment, the background of the drivers and delta <i>V</i>, the injury severity scores (ISSs) and Abbreviated Injury Scale (AIS) scores were compared for all body regions. Under similar conditions, no significant differences in severity of injuries of the drivers were found between K-cars and standard vehicles.<b>Conclusions:</b> Although we are generally concerned that drivers of small vehicles suffer more severe injuries, our results suggest that, for real-world accidents, K-cars provide similar safety for drivers involved in frontal collisions as standard vehicles in low delta <i>V</i> impact conditions.
DOI: 10.6084/m9.figshare.1130909
title: Number of bases sequenced and number of contigs generated

description: Supplemental Figure 3. Number of bases sequenced and number of contigs generated. The best-fit power regression of the data (shown with a gray line) has the equation [number of contigs] = 3.87 * 10^10 [base piars sequenced]^-0.95 with an R^2 of 0.667.
DOI: 10.6084/m9.figshare.1130909.v2
title: Number of bases sequenced and number of contigs generated

description: Supplemental Figure 3. Number of bases sequenced and number of contigs generated. The best-fit power regression of the data (shown with a gray line) has the equation [number of contigs] = 3.87 * 10^10 [base piars sequenced]^-0.95 with an R^2 of 0.667.
DOI: 10.6084/m9.figshare.1130909.v1
title: Supplemental Figure 3

description: <strong>Number of bases sequenced and number of contigs generated</strong> Number of bases sequenced and number of contigs generated. The best-fit power regression of the data (shown with a gray line) has the equation [number of contigs] = 3.87 * 10^10 [base piars sequenced]^-0.95 with an R^2 of 0.667.
DOI: 10.6084/m9.figshare.1130902
title: Table 2

description: Table 2 CON - Bos taurus contaminant from FBS
DOI: 10.6084/m9.figshare.1130901
title: Table 3

description: Table 3
DOI: 10.6084/m9.figshare.1130885
title: Dreadnoughtus schrani 3D PDF images - Lacovara et al., 2014, A Gigantic, Exceptionally Complete Titanosaurian Sauropod Dinosaur from Southern Patagonia, Argentina, Scientific Reports,

description: 3D PDF files in Supplementary Figures 9-18 from Lacovara et al., 2014, A Gigantic, Exceptionally Complete Titanosaurian Sauropod Dinosaur from Southern Patagonia, Argentina, Scientific Reports,
DOI: 10.6084/m9.figshare.1130902.v1
title: Proteomics PAN02 exosomes

description: CON - Bos taurus contaminant from FBS
DOI: 10.6084/m9.figshare.1130901.v1
title: RNAseq Human KCs after BxPC-3exo education

description: RNAseq Human KCs after BxPC-3exo education
DOI: 10.6084/m9.figshare.1130902.v2
title: Table 1

description: Table 1 CON - Bos taurus contaminant from FBS
DOI: 10.6084/m9.figshare.1130853
title: Gaussian Job Archive for C50H66N6O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1130901.v2
title: Table 2

description: Table 2
DOI: 10.6084/m9.figshare.1130853.v1
title: Gaussian Job Archive for C50H66N6O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1130901.v3
title: Table 01

description: Table 01
DOI: 10.6084/m9.figshare.1129768
title: Gaussian Job Archive for C50H66N6O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1130901.v5
title: Table 3

description: Table 3
DOI: 10.6084/m9.figshare.1129760
title: Gaussian Job Archive for C6H8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1129768.v1
title: Gaussian Job Archive for C50H66N6O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1129760.v1
title: Gaussian Job Archive for C6H8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1130901.v4
title: Table 1

description: Table 1
DOI: 10.6084/m9.figshare.1128921
title: Paramodic_whole_self_icebreaker_2014_07_21

description: An icebreaker activity to encourage people to bring their whole self to work and to creative workshops including Jams.
DOI: 10.6084/m9.figshare.1128921.v1
title: Paramodic_whole_self_icebreaker_2014_07_21

description: An icebreaker activity to encourage people to bring their whole self to work and to creative workshops including Jams.
DOI: 10.6084/m9.figshare.1128670
title: The Battle for Open - References

description: The references from my book, The Battle for Open, which is about open education, MOOCs, open access, OERs, open scholarship, etc
DOI: 10.6084/m9.figshare.1128671
title: FLORIDA STATE UNIVERSITY DATA ASSET FRAMEWORK (DAF) INTERVIEW QUESTIONNAIRE (Fall 2013) - HSC# 2013.11347 (.pdf)

description: The DAF Interview, FSU IRB HSC#2013.11347, consisted of 45 questions and covered eleven categories focused on research data management in a domain. The categories included: (1) Area of Research, (2) Disciplinary Domain Research Data Management, (3) Exemplar Research Project – The Funding Application Stage, (4) Exemplar Research Project – Data Collection Stage, (5) Exemplar Research Project - Data Storage and Backup, (6) Exemplar Research Project - Sharing and Security Research, (7) Exemplar Research Project - Archiving Data, (8) Expected Support, (9) Effective use of infrastructure, (10) Data Management Confidence and Awareness, and (11) Concluding Questions and Comments. Each category contained interview questions. The interview was administered to scientists online via Qualtrics and remained active from November 1, 2013 to December 23, 2013. There were 7 participants and 6 completed the interview for an 86% completion rate. The (1) DCC Curation Lifecycle Model, (2) Level 3 Curation Model, and (3) An Adapted Conceptual Framework Model were introduced as referent models images. These referent modes images were enabled with the Qualtrics Heat Map feature that allowed the images to capture responses via clicking on the images. This feature allowed interview participants to provide data through clicking on the elements of the images that best represent their involvement in research and perspectives on necessary processes when conducting research within and across disciplines. The data revealed three types of levels of experience with respect to reserch data managment within the scope of this research study: expert/advanced, intermediate, and novice resulting in multiple approaches for RDM articulation, education, training, and collaboration.
DOI: 10.6084/m9.figshare.1128657
title: Multiple nuclear genes stabilize the phylogenetic backbone of the genus <i>Quercus</i>

description: Phylogenetic relationships among 108 oak species (genus <i>Quercus</i> L.) were inferred using DNA sequences of six nuclear genes selected from the existing genomic resources of the genus. Previous phylogenetic reconstructions based on traditional molecular markers are inconclusive at the deeper nodes. Overall, weak phylogenetic signals were obtained for each individual gene analysis, but stronger signals were obtained when gene sequences were concatenated. Our data support the recognition of six major intrageneric groups Cyclobalanopsis, Cerris, Ilex, Quercus, Lobatae and Protobalanus. Our analyses provide resolution at deeper nodes but with moderate support and a more robust infrageneric classification within the two major clades, the ‘Old World Oaks’ (Cyclobalanopsis, Cerris, Ilex) and ‘New World Oaks’ (Quercus, Lobatae, Protobalanus). However, depending on outgroup choice, our analysis yielded two alternative placements of the Cyclobalanopsis clade within the genus <i>Quercus</i>. When <i>Castanea</i> Mill. was chosen as outgroup, our data suggested that the genus <i>Quercus</i> comprised two clades corresponding to two subgenera as traditionally recognized by Camus: subgenus <i>Euquercus</i> Hickel and Camus and subgenus <i>Cyclobalanopsis</i> Øersted (Schneider). However, when <i>Notholithocarpus</i> Manos, Cannon and S. Oh was chosen as an outgroup subgenus <i>Cyclobalanopsis</i> clustered with Cerris and Ilex groups to form the Old World clade. To assess the placement of the root, we complemented our dataset with published data of ITS and CRC sequences. Based on the concatenated eight gene sequences, the most likely root position is at the split between the ‘Old World Oaks’ and the ‘New World Oaks’, which is one of the alternative positions suggested by our six gene analysis. Using a dating approach, we inferred an Eocene age for the primary divergences in <i>Quercus</i> and a root age of about 50–55 Ma, which agrees with palaeobotanical evidence. Finally, irrespective of the outgroup choice, our data boost the topology within the New World clade, where (Protobalanus + Quercus) is a sister clade of Lobatae. Inferred divergence ages within this clade and the Cerris–Ilex clade are generally younger than could be expected from the fossil record, indicating that morphological differentiation pre-dates genetic isolation in this clade.
DOI: 10.6084/m9.figshare.1128670.v1
title: The Battle for Open - References

description: The references from my book, The Battle for Open, which is about open education, MOOCs, open access, OERs, open scholarship, etc
DOI: 10.6084/m9.figshare.1128654
title: Data Management & Curation Services: Exploring Stakeholders Opinions (Fall 2012) - HSC# 2012.9198 (link to DANS)

description: The purpose of the research study was to explore stakeholders’ opinions on select data management and curation services issues that currently affect all disciplines. A data management and curation services 10-questions survey questionnaire was developed and administered to select data management and curation promoters (funders), stakeholders (institutions), and users (evaluators) from November 5, 2012 to December 5, 2012. The survey was approved by the Florida State University Institutional Review Board (IRB) and assigned the HSC No. 2012.9198 on November 2, 2012. The survey was started by 64 participants, completed by 53, and garnered an 83% completion rate. The survey’s findings from the data management and curation key concepts category lead to the development of the data management and curation (DMC) framework.
DOI: 10.6084/m9.figshare.1128655
title: Data Management & Curation Services: Exploring Stakeholders Opinions (Fall 2012) - HSC# 2012.9198 (.pdf)

description: The purpose of the research study was to explore stakeholders’ opinions on select data management and curation services issues that currently affect all disciplines. A data management and curation services 10-questions survey questionnaire was developed and administered to select data management and curation promoters (funders), stakeholders (institutions), and users (evaluators) from November 5, 2012 to December 5, 2012. The survey was approved by the Florida State University Institutional Review Board (IRB) and assigned the HSC No. 2012.9198 on November 2, 2012. The survey was started by 64 participants, completed by 53, and garnered an 83% completion rate. The survey’s findings from the data management and curation key concepts category lead to the development of the data management and curation (DMC) framework. The preliminary study included questions on the four key concepts of data management, elements of a data management plan, theoretical frameworks/perspectives, and data seal of approval assessment guidelines. The survey participants included stakeholders representing funding agencies, institutions, users, publisher, and non-profit organizations within and outside of the USA. The findings served as a preliminary study for dissertation research on exploring the data management and curation (DMC) practices of scientists in research labs within a research university due to be published in 2014.
DOI: 10.6084/m9.figshare.1128669.v1
title: FLORIDA STATE UNIVERSITY DATA ASSET FRAMEWORK (DAF) SURVEY QUESTIONNAIRE - HSC# 2013-3073

description: A survey of the data management and curation practices of scientists at six research labs and scientists affiliated with the NSF EarthCube Project was administered from October 1, 2013 - October 31, 2013. 129 scientists started and 107 scientists completed the survey for a 83% completion rate. The survey was an adapted Data Asset Framework survey. The DAF explored the topics such as data types, formats, barriers to data management, backups, and infrastructure to name a few. The DAF has been used by several higeher education institutions (HEIs) in the UK and the USA. The purpose of this survey was to build a better understanding of research data held in select research labs, to inform strategic planning for data management at Florida State University and to inform the wider FSU data management community. Within the scope of this study 'research data' was data that scientists currently held that has been collected and/or used in the course of their research at the Florida State University and/or respective institutions. Research data can be primary data collected by researchers or their research group or secondary data provided by a third party (i.e. existing data). Data may be quantitative or qualitative (e.g. survey results, interview transcripts, databases compiled from documentary sources, images or audiovisual files). Data that scientists 'currently hold' is all research data that they currently store anywhere (i.e., in your 'My Documents' folder, on shared drive, a PC or laptop, cloud storage, on portable media such as CDs/DVDs, external hard drives, paper, or USB.