cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23302427.v1
title: Aromatic pentaamide macrocycles bind anions with high-affinity for transport across biomembranes

description: 1) Matlab code for fitting in Figure 4 (anion_sele_fianl.m, ion_cl_final.m, v_corrx2021.m). 2) Source data for Figure S5, S6, S10-S14. 3) Analysis code and resulting data spreadsheets for ASL experiment. (height_analysis.fig, height_analysis.m, Raw ASL Data.xlsx)
DOI: 10.6084/m9.figshare.27610341.v1
title: AntiSMASH and RAST Results for Bradyrhizobium sp. Ash2021

description: Secondary metabolite clusters were predicted for Bradyrhizobium sp. Ash2021 using antiSMASH v7.1.0 [1] and RAST [2].The AntiSMASH output can be found in the file: CP100604.1_AntiSMASH_Secondary_Metabolites.zip 13 secondary metabolites were predicted:RegionTypeFromToRegion 1T3PKS150,880191,932Region 2RiPP-like1,308,4091,319,263Region 3RiPP-like2,147,2792,158,103Region 4hserlactone2,234,6972,255,353Region 5T1PKS2,368,0992,413,222Region 6terpene3,465,3303,490,320Region 7LAP4,536,7774,560,506Region 8terpene5,099,1645,120,024Region 9RiPP-like6,091,4476,102,370Region 10NRPS-like7,068,1187,111,279Region 11RiPP-like7,217,8877,228,789Region 12redox-cofactor7,409,5607,431,853Region 13RiPP-like8,940,7088,951,634<br><br>The RAST output of the predicted genes can be found in the spreadsheet: RAST_Annotations_Ash2021_Bradyrhizobium.xlsxWhich includes 3 predicted secondary metabolites, Alkaloid biosynthesis from L-lysine, Auxin biosynthesis, and Thiazole- oxazole-modified microcin (TOMM) synthesis<br>[1] Blin K, Shaw S, Augustijn HE, Reitz ZL, Biermann F, Alanjary M, Fetter A, Terlouw BR, Metcalf WW, Helfrich E, van Wezel GP, Medema MH, Weber T. 2023. antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures, and visualisation. Nucl Acids Res 51 (W1) W46-W50. https://doi.org/10.1093/nar/gkad344[2]<b> </b>Brettin T, Davis JJ, Disz T, Edwards RA, Gerdes S, Olsen GJ, Olson R, Overbeek R, Parrello B, Pusch GD, Shukla M, Thomason JA, Stevens R, Vonstein V, Wattam AR, Xia F. 2015. RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. Scientific reports 5: 8365<br>https://doi.org/10.1038/srep08365
DOI: 10.17632/bc86jhnjbx
title:  Factors associated with the use of pseudoscientific treatments in the central highlands of Peru during the COVID-19 pandemic: a cross-sectional study

description: Objective. The objective of this study was to establish the factors associated with the use of pseudoscientific treatments in a sample of adults from Huanuco city, in the central highlands of Peru, during the COVID-19 pandemic.
Methods. It is an observational, cross-sectional, and analytical study. It was carried out in Huanuco city during the months of February to April. The data collection was done through a validated survey. Four categories of pseudoscientific treatments were analyzed which were crossed according to the established symptoms.
Results. It was established that among the 363 surveyed, there is an association between the use of pseudoscientific treatments and that the surveyed thought that he or she may have or have had COVID-19; that is to say, used more pseudoscientific treatments those who did not know if they had been infected or were asymptomatic (Adjusted prevalence ratio: 1.41; 95% confidence interval: 1.18 to 1.68; p<0.001), those who had symptoms but no a confirmatory test (Adjusted prevalence ratio: 1.73; 95% confidence interval: 1.46 to 2.05; p-value <0.001) and those who had confirmed COVID-19 (Adjusted prevalence ratio: 1.60; 95% confidence interval: 1.37 to 1.88; p-value <0.001). Approximately four out of ten used these treatments preventively (37.9%), especially with non-pharmacological methods. The surveyed who consumed more pseudotherapies were the older ones (Adjusted prevalence ratio: 1.006; 95% confidence interval: 1.001 to 1.011; p value=0.030), those who had a sentimental partner (Adjusted prevalence ratio: 1.33; 95% confidence interval: 1.16 to 1.52; p value <0.001), those who worked in the education sector (Adjusted prevalence ratio: 1.28; 95% confidence interval: 1.03 to 1.58; p value=0.028) and those who had asthma (Adjusted prevalence ratio: 1.27; 95% confidence interval: 1.04 to 1.55; p value=0.018). Finally, the most important information source were family/friends (76.4%) and health personnel (58.7%), for non-pharmacological and pharmacological treatments, respectively.
Conclusions. The general population uses different types of treatments without scientific evidence due to the excessive transmission of false information and the easy access to information about these pseudotherapies. In addition, the population of the highlands with jungle influences consume pseudotherapies more frequently due to their geographical location and cultural roots. There is a relationship between the possibility of disease and the use of pseudoscientific treatments because an association was found between the consumption of pseudotherapies and those who thought they had the disease and those who had confirmed it. Being the consumption either to treat the symptoms, to prevent them, or both. Healthy people self-medicated, consumed, and practiced pseudotherapies, not to treat, but to prevent the symptoms of the infection.
DOI: 10.17632/gn8znmyxrh
title: Implementation of a ternary lattice Boltzmann model in LAMMPS

description: The properties of multicomponent fluids are governed by the interplay of phase behavior, fluid dynamics, and interfacial thermodynamics. A mixture formulation that leverages this interplay is an important aspect in many fabrication processes based on emulsion templating. The lattice Boltzmann method (LBM) has become a popular approach for simulating hydrodynamic effects in complex fluids and soft matter. Here we present an implementation of a ternary lattice Boltzmann model that allows to simulate a mixture of three immiscible fluids. We build on the LATBOLTZ extension of the open-source package LAMMPS and implement a ternary free energy model recently introduced by Semprebon et al. [Phys. Rev. E 93, 033305 (2016)]. We validate the static and dynamic properties by simulating liquid lenses, double emulsions, and ternary mixtures. From the simulations, we obtain the complete morphology diagram of the ternary mixture in composition space. We further discuss an application of the method to phase segregation of ternary films. The implementation of the ternary LBM in LAMMPS opens vast opportunities for mesoscale simulations of interfacial phenomena and non-equilibrium transport processes in multicomponent fluid mixtures.
DOI: 10.17632/hvwswmgg7p
title: Cell death assays raw data

description: Raw data for cell death assays. Includes dead and total cell counts for three treatments: Control; CHX; TRAIL+CHX. TRAIL+CHX data also includes time to 50% death. Related to Figure 4 in Anderson et al., 2019.
DOI: 10.6084/m9.figshare.13317614.v1
title: FISH RAW Tiff images and metadata for images in the study

description: The RAW Tiff images of the FISH images presented in this study.
DOI: 10.6084/m9.figshare.20226270.v1
title: Normalized Remote Sensing Agricultural GPP Monsoon 2006

description: agricultural gross primary productivity
DOI: 10.6084/m9.figshare.23993517.v5
title: A 30-m annual corn residue coverage dataset from 2013 to 2021 in Northeast China

description: Data files are in ".tif" format.XY coordinate system: GCS_WGS_1984①Pixel values represent: values magnified 1000 times, '2013C.tif' represents 2013 pre-sowing CRC, '2013Q.tif' represents 2013 post-harvest CRC；②Li_CRC_2021.tif is the CRC of Songnen Plain in 2021 by Li et al.③Conservation Tillage Yearbook.xlsx is the area of conservation tillage recorded in the statistical yearbook④GEE.js is the code for the HISTARFM method of fusing images⑤SD_CRC_model.py is the code for CRC modeling⑥Reflectance Comparison Chart.ipynb is the code for Fig 4, Comparison chart of different CRC DATA.ipynb is the code for Fig 8, CRC_box_plot_changes.ipynb is the code for Fig 13
DOI: 10.6084/m9.figshare.4488149.v1
title: Code, recordings, validations and Regions of interest

description: Here is the code as well as the the recordings, validations and regions of interest used for the development of the experiment presented in the journal article "Species-specific audio detection: A comparison of three template-based classification algorithms using random forests".
DOI: 10.17632/sz3774jbbp
title: PCB optical inspection autofocus

description: This is a dataset for testing the autofocusing algorithms. It comprises 25 images, ten times magnification, size 640 x 480, captured with a USB digital microscope. The dataset provides a different level of sharpness in which the autofocusing evaluation function is intended to create a ranking correctly. As can be seen, the quality of the photos might not be satisfying due to their resolution and perhaps too much noise. However, this is a condition that one can evaluate the robustness of the proposed method.
DOI: 10.17632/jc37n76wyt
title: Data for: Improving video game project scope decisions with data: An analysis of achievements and game completion rates

description: The data set used in the research for the paper titled: Improving video game project scope decisions with data: An analysis of achievements and game completion rates. Product and achievement data for video games sold through Valve Corporation's PC video game platform Steam was compiled, and "game completion" achievements were evaluated by hand for a random sample chosen from the video games listed. For the purposes of the research, only video games up through the year 2016 were evaluated. Entries with "completion rates" also include relevant data from Sergey Galyonkin's SteamSpy service, and "xPaw" and "Marlamin"'s SteamDB service.
DOI: 10.17632/nby5kbrb7n
title: Data on Mobility Pattern of Male and Female in Delhi

description: The data is part of research study exploring following research questions-
(i) What are the household factors that affect the mobility of women as compared to men?
(ii) What are the transport-related factors contributing to women being transport disadvantaged in urban areas?

The primary data for this study was gathered through an online (public transportation users) and offline survey at a number of bus stops and metro stations in Delhi, India. The survey was conducted from December 2020 to March 2021, and a sample of 634 public transport users was collected, including both men and women, capturing their socio-economic status and travel patterns along with their perceptions about the public transport service provision in the city on a five-scale Likert scale ranging from "strongly disagree" to "strongly agree."

The survey includes passenger information, focusing on their socio-economic characteristics. Travel behavior focuses on their private and public transport usage patterns and perceptions about the service they are using. Rating of the built environment (road condition, public transport, parking, footpaths, and non-motorized transport services) while accessing the public transport service they are using.

The Excel file includes Code sheet for decoding the users responses.
DOI: 10.6084/m9.figshare.12546977.v2
title: Database S1 from Information transfer efficiency differs in wild chimpanzees and bonobos, but not social cognition

description: Data used to run the Model 1a
DOI: 10.6084/m9.figshare.27193365.v1
title: DNA_NanoGripper_Fig.5C

description: "Bioinspired Designer DNA NanoGripper for Virus Sensing and Potential Inhibition": The dataset for the plot in <b>Fig. 5C</b>.
DOI: 10.6084/m9.figshare.5683711.v1
title: Data for Aakala: 'Forest fire histories and tree age structures in Värriö and Maltio Strict Nature Reserves, northern Finland'

description: Site and fire history data used in the paper Aakala: 'Forest fire histories and tree age structures in Värriö and Maltio Strict Nature Reserves, northern Finland', published in Boreal Environment Research<br>
DOI: 10.17632/r8htzstd6b
title: EKGuniversit201

description: This dataset contains information from 201 university students about their health status
DOI: 10.6084/m9.figshare.13302920.v2
title: 7_The application of NOx removal technologies

description: The application of NOx removal technologies
DOI: 10.6084/m9.figshare.14420588.v2
title: Rapid single-molecule detection of COVID-19 and MERS antigens via nanobody-functionalized organic electrochemical transistors

description: <b>The COVID-19 pandemic has highlighted the need for rapid and sensitive protein detection and quantification in simple and robust formats for widespread point-of-care applications. Here, we report nanobody-functionalized organic electrochemical transistors with a modular architecture for the rapid quantification of single-molecule-to-nanomolar levels of specific antigens in complex bodily fluids. The sensors combine a solution-processable conjugated polymer in the transistor channel and the high-density and orientation-controlled bioconjugation of nanobody–SpyCatcher fusion proteins on disposable gate electrodes. They provide results after 10-min of exposure to 5 μL of unprocessed samples, maintain high specificity and single-molecule sensitivity in human saliva and serum, and can be reprogrammed to detect any protein antigen if a corresponding specific nanobody is available. We used the sensors to detect green fluorescent protein, SARS-CoV-2 and MERS-CoV spike proteins, and for the COVID-19 screening of unprocessed clinical nasopharyngeal swab and saliva samples with a wide range of viral loads.</b>
DOI: 10.6084/m9.figshare.14913045.v3
title: AT_Genome_annotations

description: Arabidopsis_thaliana_Col-XJTU genome annotations.
DOI: 10.6084/m9.figshare.27324042.v1
title: Dataset_Anti-Ebola Therapeutics and Rational Drug Design

description: The Ebola virus (EBOV) has been responsible for numerous outbreaks of hemorrhagic fever, resulting in high mortality rates across Africa. Due to the current absence of effective antiviral therapies, this study focused on computational approaches to evaluate potential inhibitors. Throug multiple comprehensive in silico techniques to analyze 12 small molecule inhibitors, specifically highlighting CA-074 as the most promising candidate. Key analyses included druglikeness evaluation, ADMET predictions, molecular docking and molecular dynamics simulations. Additionally, density functional theory (DFT) calculations were performed to explore the interaction energies between CA-074 and the Cathepsin B protein, its target in the viral replication process. Using the Molecular Fractionation with Conjugated Caps (MFCC) method, we gained a detailed understanding of the ligand-protein interactions, identifying key residues involved in the binding process molecular recognition. These findings provide a solid basis for the rational design of Cathepsin B inhibitors as potential therapeutic agents against EBOV.
DOI: 10.6084/m9.figshare.27856392.v1
title: Supplemental material for "Metabolic fuel selection in rainbow trout: Coping with Intralipid infusion<b>"</b>

description: The impact of hyperlipidemia on fuel selection has never been investigated in fish. This study quantifies how Intralipid administration affects: (i) <i>in vivo</i> mobilization of lipids (lipolytic rate: <i>R</i><sub><em>a</em></sub> glycerol) and carbohydrates (hepatic glucose production: <i>R</i><sub><em>a</em></sub> glucose) in rainbow trout, and (ii) key proteins involved in the regulation of fuel metabolism that could explain changes in glycerol and glucose kinetics. Results show that Intralipid triples lipolytic rate (from 2.5 ± 0.5 to 7.8 ± 1.1 µmol glycerol kg<sup>−1</sup> min<sup>−1</sup>) and inhibits glucose production by 36% (from 7.3 ± 0.9 to 4.7 ± 0.4 µmol kg<sup>−1</sup> min<sup>−1</sup>). The stimulation of lipolysis is probably driven by lipase activation (gene expression of hormone sensitive lipase increases in muscle), or by mass action effect. Such a strong lipolytic response is quite surprising because baseline <i>R</i><sub><em>a</em></sub> glycerol is already particularly high in fish, and well known for its stability under a variety of stresses that have important effects in mammals. The reduction in trout <i>R</i><sub><em>a</em></sub> glucose is likely caused by a large decrease in glycogen mobilization because hepatic gluconeogenic pathway capacity may rise as a consequence of increases in gluconeogenesis gene transcript levels. In contrast to humans, which maintain steady glucose production in response to Intralipid infusion, rainbow trout appear to overcompensate increased gluconeogenic capacity with a disproportionately large inhibition of glycogen breakdown. Overall, these Intralipid-driven changes in glycerol and glucose kinetics allow fish to decrease their reliance on carbohydrates and amino acids by replacing them, in part, with fatty acids as metabolic fuels.
DOI: 10.6084/m9.figshare.29095601.v2
title: Genome assembly and annotation of <i>Magnolia amoena</i>

description: Genome of<i> Magnolia amoena </i>are sequenced and assembled for providing genetic resources and improving conservation strategies of this endangered species. The file uploaded is the assembly and annotation files of <i>Magnolia amoena</i>.
DOI: 10.6084/m9.figshare.24514459.v6
title: Site-specfic optimal air temperature for vegetation photosynthesis across the globe

description: Please download the README file to refer to the details of the dataset
DOI: 10.6084/m9.figshare.27059740.v4
title: 佳味二芝丸通过调节 SIRT1/JNK/p38 MAPK 通路改善雄激素性脱发

description: 雄激素性脱发 （AGA） 是一种脱发。我们之前的研究表明，AGA 改善草药处方“甲味二之碗”（WJWE） 的水提取物具有 AGA 改善能力，该处方源自传统配方“二之碗”。然而，其潜在机制仍然未知。本研究采用 UPLC\u2012MS/MS 分析对 WJWE 中的植物化学成分进行表征。采用二氢睾酮 （DHT） 诱导的小鼠模型和真皮细胞 （DPC） 测定来评价和阐明 WJWE 对 AGA 的有益影响和机制。WJWE 通过刺激 Wnt5A/β-Catenin 通路，促进 AGA 小鼠的毛发生长和毛囊再生，改善 DPCs 生长和剂量依赖性保护的 DHT 减少的 DPCs 在体外的活力 <i>in vitro</i> 。此外，WJWE 减少了 AGA 模型小鼠皮肤和 DHT 处理的 DPC 中 DHT 诱导的氧化应激。为了阐明调节机制，我们发现 WJWE 处理在 DHT 处理的 DPCs 和 AGA 模型小鼠中显着且剂量依赖性地增加了 SIRT1 的表达并降低了 JNK 和 p38 MAPK 的磷酸化。而 EX527 （一种 SIRT1 抑制剂） 的应用可以起 WJWE 的作用。我们的研究提供了 WJWE 治疗 AGA 的一些证据，其中 SIRT1/JNK/p38 MAPK 信号通路可能是主要靶点。
DOI: 10.6084/m9.figshare.5497918.v1
title: mmc1.xlsx

description: Supporting Dataset for <b>"Atmospheric CO<sub>2</sub> effect on stable carbon isotope composition of terrestrial fossil archives" </b><b><br></b><i>Nature Communications</i>, DOI: 10.1038/s41467-017-02691-x<b><br></b>Vincent J. Hare<sup>a,b</sup>, Emma Loftus<sup>a,c</sup>, Amy Jeffrey<sup>a</sup> and Christopher Bronk Ramsey<sup>a</sup><sup><br></sup><i><sup>a</sup> Research Laboratory for Archaeology and the History of Art, University of Oxford, South Parks Road, Oxford OX13QY, UK</i><i><sup>b</sup> Department of Earth and Environmental Sciences, University of Rochester, Rochester, New York 14627, USA</i><i><sup>b</sup> Merton College, University of Oxford, Merton Street, Oxford OX1 4JDY, UK<br></i>
DOI: 10.17632/gydv43hcxy
title: Antarctic meteorological data recorded at Ferraz Station in King George Island

description: The data was obtained, by ETA project, with a sampling frequency of 0.1 Hz and stored as 5-min averages. Missing value: -9999.0 The local time (LT) was used as the standard time (LT = UTC - 4). Radiation fluxes were considered positive when directed upward towards the atmosphere. Air temperature (Temp) and air relative humidity (RH) Height: 2.2 m. Equipment: CS215 Campbell Sci. Inc. Period: 21 Nov 2013 - 10 Oct 2014 and 01 Nov 2014 - 30 Nov 2015. Wind speed (WS) and wind direction (WD) Height: 10.6 m. Equipment: 05103, R. M. Young Company. WS: 21 Nov 2013 – 10 Oct 2014, 26 Oct 2014 – 03 Oct 2015 and 23 Nov 2015 – 30 Nov 2015. WD: 11 Nov2013 – 03 Oct 2014, 21 Oct 2014 – 18 Jul – 15 and 23 Nov 2015 – 30 Nov 15 Barometric pressure Height: 1.5 m. Equipment: CS106 Vaisala. Period: 28 Feb 2011 to 24 Feb 2012, 21 Nov 2013 to 10 Oct 2014, 02 to 10 Nov 2014 and 21 Nov 2014 to 30 Nov 2015. Incident shortwave radiation (SW↓) and reflected shortwave radiation (SW↑) Height: 3.4 m. Equipment: CNR4 + ventilation unit CVF4 Kipp Zonen. Period: 28 Feb 2011 - 24 Feb 2012 and 21 Mar 2014 – 21 Nov 2015. Longwave radiation emitted by atmosphere (LW↓) and Longwave radiation emitted by surface (LW↑) Height: 3.4 m. Equipment: CNR4 + ventilation unit CVF4 Kipp Zonen. Period: 28 Feb 2011 - 24 Feb 2012. Net radiation (Rn) Height: 3.4 m. Equipment: CNR4 + ventilation unit CVF4, Kipp Zonen. Period: 28 Feb 2011 to 24 Feb 2012. Equipment: NR Lite 2, Kipp Zonen. Period: 12 Nov 2013 to 11 Oct 2014 and 22 Nov 2014 to 21 Nov 2015.
DOI: 10.17632/mkvn4nw85g
title: Rock glacier inventory of the southwestern Pamirs, supported by InSAR kinematics

description: Shapefile of rock glaciers in the southwestern Pamirs. 
Metrics comprise center coordinate (X, Y), length (m), area (km2), minimum elevation at the front (MEF; m), maximum elevation (MaxE; m), elevation (mean elevation; m), slope (mean slope of gradient; °), and aspect (N, NE, E, SE, S, SW, W, NW; e.g., 90° = E, 180° = S), upslope connection units (talus-connected RGs (T-RGs), debris-mantled slope-connected RGs (DMS-RGs), glacier-connected RGs (G-RGs), and glacier fore-field-connected RGs (GF-RGs)), velocity class (&lt;1, 1-3, 3-10, 10-30, 30-100, &gt;100, undefined; cm/yr)
DOI: 10.17632/szgtbzwpy8
title: A new strategy for risk assessment of PM2.5-bound elements by considering the influence of wind regimes

description: These datasets are unique collected observational information data obtained in the under-observed areas associated with the publication of the same title. To assess the importance of including local environmental constraints characterization on air quality management, we combined surface meteorological data with air pollution levels from a comprehensive physical and chemical 
characterization of daily sampling of PM2.5 measured in industrial sites in Joinville, a coastal city in southern Brazil. The raw meteorological data and PM2.5 physical and chemical laboratory analysis results are presented. The content of the data is presented in the README_Column_description.txt file. Details about data gathering, understanding and main findings can be found in the associated publication. The scripts used to work with these datasets in this study are available at the Github page (link below).
DOI: 10.6084/m9.figshare.24003855.v1
title: De novo assembly of the mitochondrial genome of Solanum muricatum

description: Solanum muricatum mitochondrial genome is given as its assembled nucleotide sequences (in fasta format), and we include the annotation information of the genomes (in genbank format).
DOI: 10.6084/m9.figshare.25872292.v1
title: R_gene_annotations_drago2.tsv

description: R-gene annotations for 78 assemblies.
DOI: 10.6084/m9.figshare.28532633.v1
title: Rawdata and metadata

description: Data and metadata for the manuscript related to this project.
DOI: 10.17632/7f35y2bcy8
title: Data for: Seasonal temperature distributions and variations in salt marshes: Field investigation and numerical simulation

description: This data set contains creek-marsh section observation data, estuarine and meteorological data, and input files for the model used in the paper - Xiayang Yu, Xinghua Xu, Lucheng Zhan, Haifeng Cheng, Pei Xin (2024). Seasonal temperature distributions and variations in salt marshes: Field investigation and numerical simulation - submitted to Water Resources Research.
DOI: 10.6084/m9.figshare.21333042.v1
title: Harvesting Metadata in Clinical Care: A crosswalk between FHIR, OMOP, CDISC and openEHR Metadata

description: Supplementary tables and figures from the research work of harvesting metadata in a clinical enviroment. The tables include a crosswalk between the 4 different data formats FHIR, OMOP, openEHR and CDISC and a prioritization of the metadata items identified. The figures include the visualization of a priority scoring and an example of the prevented data loss by using the proposed convergence format.
DOI: 10.6084/m9.figshare.28255817.v1
title: Supplementary material1125.docx

description: <b>Environmental sciences</b>