cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1502427
title: Phototactic flexibility. Raw data.

description: Data set from the paper:A decision underlies phototaxis in an insect
DOI: 10.6084/m9.figshare.1502429.v1
title: Royal Holloway APCs 2015 (Jan-June)

description: This spreadsheet contains details of article processing charges (APCs) paid by Royal Holloway, University of London January-June 2015. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/).
DOI: 10.6084/m9.figshare.1502428.v2
title: PrePex Pilot Study PHRU-PSI

description: PrePex Device Medical Male Circumcision Field Study - Pilot in South Africa
DOI: 10.6084/m9.figshare.1502432.v3
title: Absence of hybridisation between <i>Fuscospora</i> species at a site in Arthur's Pass National Park, New Zealand

description: We analysed simple sequence repeat markers for a selection of red beech (<i>Fuscospora fusca</i>) and mountain beech (<i>Fuscospora cliffortioides</i>) trees growing together and for seeds collected from them. Our analysis detected neither hybrid trees nor hybrid seeds within our sample. We suggest pre-zygotic reproductive isolating mechanisms such as differences in flowering time may be important in maintaining boundaries between <i>Fuscospora</i> species despite extensive sympatry.
DOI: 10.6084/m9.figshare.1512834.v202
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1502427.v8
title: Phototactic flexibility. Raw data.

description: Data set from the paper:A decision underlies phototaxis in an insect
DOI: 10.6084/m9.figshare.1502432.v2
title: Absence of hybridisation between <i>Fuscospora</i> species at a site in Arthur's Pass National Park, New Zealand

description: We analysed simple sequence repeat markers for a selection of red beech (<i>Fuscospora fusca</i>) and mountain beech (<i>Fuscospora cliffortioides</i>) trees growing together and for seeds collected from them. Our analysis detected neither hybrid trees nor hybrid seeds within our sample. We suggest pre-zygotic reproductive isolating mechanisms such as differences in flowering time may be important in maintaining boundaries between <i>Fuscospora</i> species despite extensive sympatry.
DOI: 10.6084/m9.figshare.1502427.v7
title: Phototactic flexibility. Raw data.

description: Data set from the paper:A decision underlies phototaxis in an insect
DOI: 10.6084/m9.figshare.1502428.v1
title: PrePex Pilot Study PHRU-PSi

description: PrePex Device Medical Male Circumcision Field Study - Pilot in South Africa
DOI: 10.6084/m9.figshare.1512834.v203
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1501519
title: Ichneumonid subfamily abundances from 38 datasets collected between 25°S and 81°N

description: Data from a study of latitudinal diversity gradients in the parasitoid wasp family Ichneumonidae, using subfamily abundance from 38 collections made between 25°S and 81°N. All collections in this study were made using Malaise traps. Data for most of the collections were found in published papers (see below); data from Alberta was collected by Marla Schwarzfeld in association with the Ecoystem Management Emulating Natural Disturbance (EMEND) project; data from northern Canada was collected by Laura Timms in association with the Northern Biodiversity Program (NBP); data from Peru was collected by Ilari Sääksjärvi. These data are associated with manuscript in review: Timms, L.L., Schwarzfeld, M., and Sääksjärvi, I.E. Extending understanding of latitudinal patterns in parasitoid wasp diversity. This dataset has 44 columns and 38 rows of data, where each row is the information associated with one collection. Column titles: Collection = Abbreviation for the collection Location = Geographic location (country, state, or province) where the collection took place Year(s) = Year(s) during which the collection took place Acae-Xori = these 28 columns contain the abundances 28 ichneumonid subfamilies; the four letter code title of each column is the first four letters of the subfamily name (except for Ortc = Orthocentrinae and Ortp = Orthopelmatinae) TOT = the total abundance of all ichneumonids in each collection Lat = latitude of the collection site (where negative values indicate southern hemisphere) H1 = northern/southern hemisphere Long = longitude of the collection site H2 = eastern/western hemisphere MAP = mean annual precipitation at the collection site LGP.mean = mean length of growing period (LGP) at each collection site, based on data from the FAO (http://www.fao.org/geonetwork/srv/en/main.home), where LGP is calculated based on the number of days with a temperature of at least 5°C and with enough moisture for plant growth. Note that LGP values are usually provided by the FAO in the form of ranges, the values given here are the midpoints of those ranges. Also note, the values for NBP.BKS and NBP.HAZ are equal to the mean number of days above 5°C according to the Environment Canada national climate archives; the FAO's LGP values for these regions were erroneously provided as 0. TD.tot = total number of Malaise trap days in the collection Traps = total number of Malaise traps used in the collection dpt = days per trap; mean number of days each Malaise trap was deployed dpt.lgp = days per trap divided by length of growing period; a measure of the proportion of the active season trapped Ind.TD.tot = total number of individuals per trap day for the collection iabd = abundance of idiobionts in the collection kabd = abundance of koinobionts in the collection Related reference(s) = associated literature reference(s) for the collection
DOI: 10.6084/m9.figshare.1501521
title: SR_demo

description: Comparison of results of Yang's and the proposed method
DOI: 10.6084/m9.figshare.1501518
title: Regional scale permeability

description: Database of regional scale permeabilty from calibrated groundwater models
DOI: 10.6084/m9.figshare.1501519.v1
title: Ichneumonid subfamily abundances from 38 datasets collected between 25°S and 81°N

description: Data from a study of latitudinal diversity gradients in the parasitoid wasp family Ichneumonidae, using subfamily abundance from 38 collections made between 25°S and 81°N. All collections in this study were made using Malaise traps. Data for most of the collections were found in published papers (see below); data from Alberta was collected by Marla Schwarzfeld in association with the Ecoystem Management Emulating Natural Disturbance (EMEND) project; data from northern Canada was collected by Laura Timms in association with the Northern Biodiversity Program (NBP); data from Peru was collected by Ilari Sääksjärvi. These data are associated with manuscript in review: Timms, L.L., Schwarzfeld, M., and Sääksjärvi, I.E. Extending understanding of latitudinal patterns in parasitoid wasp diversity. This dataset has 44 columns and 38 rows of data, where each row is the information associated with one collection. Column titles: Collection = Abbreviation for the collection Location = Geographic location (country, state, or province) where the collection took place Year(s) = Year(s) during which the collection took place Acae-Xori = these 28 columns contain the abundances 28 ichneumonid subfamilies; the four letter code title of each column is the first four letters of the subfamily name (except for Ortc = Orthocentrinae and Ortp = Orthopelmatinae) TOT = the total abundance of all ichneumonids in each collection Lat = latitude of the collection site (where negative values indicate southern hemisphere) H1 = northern/southern hemisphere Long = longitude of the collection site H2 = eastern/western hemisphere MAP = mean annual precipitation at the collection site LGP.mean = mean length of growing period (LGP) at each collection site, based on data from the FAO (http://www.fao.org/geonetwork/srv/en/main.home), where LGP is calculated based on the number of days with a temperature of at least 5°C and with enough moisture for plant growth. Note that LGP values are usually provided by the FAO in the form of ranges, the values given here are the midpoints of those ranges. Also note, the values for NBP.BKS and NBP.HAZ are equal to the mean number of days above 5°C according to the Environment Canada national climate archives; the FAO's LGP values for these regions were erroneously provided as 0. TD.tot = total number of Malaise trap days in the collection Traps = total number of Malaise traps used in the collection dpt = days per trap; mean number of days each Malaise trap was deployed dpt.lgp = days per trap divided by length of growing period; a measure of the proportion of the active season trapped Ind.TD.tot = total number of individuals per trap day for the collection iabd = abundance of idiobionts in the collection kabd = abundance of koinobionts in the collection Related reference(s) = associated literature reference(s) for the collection
DOI: 10.6084/m9.figshare.1501518.v1
title: Regional scale permeability

description: Database of regional scale permeabilty from calibrated groundwater models
DOI: 10.6084/m9.figshare.1501521.v1
title: SR_demo

description: Comparison of results of Yang's and the proposed method
DOI: 10.6084/m9.figshare.1501511
title: Gaussian Job Archive for C39H42N6O4Zn2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1501512
title: Catecholaminergic Gene Polymorphisms and Brain Morphology and IBS

description: This data is a summary of the brain morphology measures (volume, mean curvature, surface area, and cortical thickness) of specific regions of interest tested in irritable bowel syndrome compared to healthy controls. The regions of interest included anterior insula, posterior insula, anterior cingulate cortex, anterior mid cingulate cortex, postcentral gyrus, precentral gyrus, amygdala, hippocampus, putamen, superior frontal gyrus, gyrus rectus, middle orbital gyrus, and brianstem.
DOI: 10.6084/m9.figshare.1512834.v204
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1501510
title: Gaussian Job Archive for C38H42N6O2Zn2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1501511.v1
title: Gaussian Job Archive for C39H42N6O4Zn2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1501512.v1
title: Catecholaminergic Gene Polymorphisms and Brain Morphology and IBS

description: This data is a summary of the brain morphology measures (volume, mean curvature, surface area, and cortical thickness) of specific regions of interest tested in irritable bowel syndrome compared to healthy controls. The regions of interest included anterior insula, posterior insula, anterior cingulate cortex, anterior mid cingulate cortex, postcentral gyrus, precentral gyrus, amygdala, hippocampus, putamen, superior frontal gyrus, gyrus rectus, middle orbital gyrus, and brianstem.
DOI: 10.6084/m9.figshare.1512834.v205
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1501510.v1
title: Gaussian Job Archive for C38H42N6O2Zn2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1501513.v1
title: Old Collections in a New Bottle: How The Chinese University of Hong Kong Library Uncovers Hidden Treasures of the University

description: The Chinese University of Hong Kong (CUHK) Library is one of the pioneers in digital initiatives in Hong Kong. At present, there are over 25 digitization projects with more than two million images, including newspaper clippings, ancient Oracle bones, selected journals relating to the Hong Kong Literature, Chinese threaded bound books published from Yuan Dynasty (year 1271) to Qing Dynasty (year 1911) as well as CUHK theses and dissertations. The above digitized materials were hosted on different home grown systems. These materials represent the treasures of the Library and have much research potential that they should be discoverable and accessible by the research community. A robust and modern repository is needed to replace the increasingly outdated home grown systems that were developed decades ago. This presentation will illustrate how the Library tackles all the problems encountered in the move to a new repository built on Islandora. The most critical problem is that Islandora needs to be tweaked and localized to handle the following issues relating to the display and searching of Chinese characters in Chinese Japanese Korean (CJK) environment: Searching and indexing of Chinese words and phrases;Cross-walk search of materials in Traditional Chinese and Simplified Chinese;The page turning direction from left to right for all ancient Chinese classics, which is the opposite of the direction from right to left for Western publications; andDisplay of Chinese characters in ancient Chinese texts vertically from top to bottom and left to right Two distinct collections of the Library, namely the Chinese Rare Book Digital Collection and Sheng Xuan Huai Archive that contains the letters and correspondences of Sheng Xuan Huai, who was a very influential entrepreneur in late Qing Dynasty, will be used to illustrate how the Library rides over the above challenges to revitalize old collections in a new repository. The road map for the further development of CUHK Digital Collections particularly the bringing of legacy collections into the repository will also be presented.
DOI: 10.6084/m9.figshare.1501506
title: Cholai, a Distilled Beverage of West Bengal: Product Characterization

description: Moonshine or Local liquor is widely consumed in india by poor class people. The regulation upon these liquor production is not strict and the production often run under disguise. Illegal moonshine is the cause of death of several hundred people every year. Here I did a biochemical analysis of the product and also found out hopw it becomes poisonous.
DOI: 10.6084/m9.figshare.1501507
title: Platform Survey Database

description: Between 1995 and 2011, Dr. Milton Love and colleagues surveyed the fish assemblages of 22 oil and gas platforms off southern California using the manned research submersibles Delta and Dual DeepWorker. This work was funded by the United States Bureau of Ocean Energy Management (previously the Minerals Management Service), the Biological Resources Division of the United States Geological Survey, and the California Artificial Reef Enhancement Program. The data from these surveys was entered into a Microsoft Access database called Rigbase. Please cite as: Love, Milton (2013): Platform Survey Database. figshare. http://dx.doi.org/10.6084/m9.figshare.1501507 For an explanation of the data tables see the pdf at the link below: http://lovelab.id.ucsb.edu/rigbase_2003/rigbase_database_documentation.pdf For more details on the research please see the Love Lab website: http://www.lovelab.id.ucsb.edu/platform_databse.html Database Changelog: 08-20-2013: All tables have been altered.Minor corrections have been made to tables: Tbl_TRANSECT Tbl_FISH Tbl_HABITAT Navigation data have been corrected for tbl_DIVE so that latitude and longitude reflect the starting point of the first transect, except for oil platform dives when they are the centerpoint of the platform. Two new tables have been added with detailed navigation points. Tbl_Nav_1995to2001 contains navigation fixes at 5 minute intervals along a transect. Tbl_Nav_2002to2011 contains navigation fixes every few seconds along a transect. Tbl_Depth has been replaced with tbl_CTD which contains additional information (e.g.salinity) for dives later than 2001. 03-05-2012: Data made available to public. 08-24-2012: "Temperature" data added to tbl_Fish for year=2011; "Depth" corrected in tbl_Fish for dive 7244
DOI: 10.6084/m9.figshare.1512834.v206
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1501503
title: Read Me (Code book)

description: Code book for: Burns, C. S. (2015). Characteristics of a megajournal: A bibliometric case study. <em>Journal of Information Science Theory and Practice, 3</em>(2), 16-30.
DOI: 10.6084/m9.figshare.1501498
title: Data for: Characteristics of a megajournal: A bibliometric case study

description: Data for an article published in the Journal of Information Science Theory and Practice
DOI: 10.6084/m9.figshare.1501503.v1
title: Read Me (Code book)

description: Code book for: Burns, C. S. (2015). Characteristics of a megajournal: A bibliometric case study. <em>Journal of Information Science Theory and Practice, 3</em>(2), 16-30.
DOI: 10.6084/m9.figshare.1512834.v207
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1501497
title: PeerJ article data

description: Main data set for: Burns, C. S. (2015). Characteristics of a megajournal: A bibliometric case study. <em>Journal of Information Science Theory and Practice, 3</em>(2), 16-30.
DOI: 10.6084/m9.figshare.1501496
title: PeerJ cited journal data

description: List of journals cited in PeerJ sampled articles as reported in: Burns, C. S. (2015). Characteristics of a megajournal: A bibliometric case study. <em>Journal of Information Science Theory and Practice, 3</em>(2), 16-30.
DOI: 10.6084/m9.figshare.1501498.v1
title: Data for: Characteristics of a megajournal: A bibliometric case study

description: Data for an article published in the Journal of Information Science Theory and Practice