cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/4w8n8n96tc
title: raw data

description: 16s high-throughput sequencing results were used Uparse (v.7.1) to cluster classification operation units (Operationaltaxonomicunits, OTU) at 97% similarity to get the representative sequence of OTU. Then Alpha diversity analysis was carried out by Mothur (v.1.30.2) to reflect species richness and diversity in the samples. Beta diversity analysis was carried out by Qiime (v.1.9.1) to compare the community composition of the tested samples, and R language (version3.3.1) was used to analyze the species composition of the tested samples.
In the results of metagenome sequencing, the original sequencing data were controlled by fastp software, and the short segment sequences obtained by quality control were assembled by Multiple_Megahit. The assembly results were clustered by CD-HIT software to construct non-redundant gene set, and the high-quality reads of each sample were compared with non-redundant gene set using SOAPaligner software (default parameter: 95% identity), and the abundance information of genes in the corresponding samples was calculated. Then the non-redundant gene set sequence was compared with KEGG gene database (GENES) by DIAMOND (parameter: blastp; E-value≤1e-5). According to the gene abundance sum of KO, Pathway, EC and Module, the abundance of this functional category was calculated, and based on the corresponding abundance data table, the functional composition of microbes in the tested samples was analyzed by R language.
The original data of serum metabolic sequencing was converted into mzXML format by ProteoWizard, and then peaked alignment, retention time correction and peaked area extraction were performed by XCMS program. The structure of metabolites was identified by accurate mass number matching (<25ppm) and secondary spectrum matching to search the database.83 For the data extracted by XCMS, deleted the ion peaks with missing values > 50% in the group. The software SIMCA-P14.1 (Umetrics,Umea,Sweden) was used for pattern recognition. After the data was preprocessed by Pareto-scaling, the dimension of the multivariable original data was reduced by PCA (principal component analysis). The grouping trend (intra-group and inter-group similarity and difference) and outliers (whether there are abnormal samples) of the observed variables in the data set were analyzed. The differential metabolites were screened by the multiple of difference (Fold change) and T test (Student'st-test) obtained by univariate analysis.
DOI: 10.17632/7ymnbnskhy
title: A Peroxiredoxin-P38 MAPK scaffold increases MAPK activity by MAP3K-independent mechanisms

description: Original digital image data (immunoblots and microscopy) included in figures 1-6 of manuscript. Rectangular boxes are used to indicate parts of images that were included in figure panels.
DOI: 10.17632/8dcwb9v7dh
title: DNA Binding by the Mis4Scc2 Loader Promotes Topological DNA Entrapment by the Cohesin Ring. Kurokawa and Murayama

description: original data set
DOI: 10.17632/8rrdtjs632
title: Primenenie modeli smeshannogo obucheniya v prepodavanii russkogo yazyka

description: Primenenie modeli smeshannogo obucheniya v prepodavanii russkogo yazyka mozhet ne tol'ko uluchshit' sposobnost' studentov k ovladeniyu i prakticheskomu ispol'zovaniyu russkogo yazyka, no i povysit' uroven' prepodavaniya russkogo yazyka uchitelyami. Takim obrazom, ispol'zovanie modeli smeshannogo obucheniya russkomu yazyku imeet krajne vazhnoe obrazovatel'noe znachenie.
DOI: 10.17632/b6z28jg656
title: Aerosol dispersion and elimination test in an operating room

description: We deployed a network of 23 particulate matter sensors in a predetermined grid and at different heights around an operating room (OR) table to monitor the aerosol dispersion and elimination process. Sodium chloride (NaCl) particles were nebulized using a medical nebulizer as tracing particles. The 3-D animations show the two tests conducted with the nebulization process followed by the dispersion. The dots represent the sensor locations, with the aerosol concentration represented by the color scale.
DOI: 10.17632/mj8sxgfzyj
title: Digital Data Amount (DDA) - Data Base

description: Scrips and data base of digital water from multiple precipitation sources in the São Paulo State, Brazil.
DOI: 10.17632/myk9p4m55m
title: Первичные данные для МД

description: - данные по году начала реализации ППС собирались вручную, источники для каждой страны указаны в файле отдельно; - расчёт кластеров и ID проводился на данных World Contraception Use 2020; - данные по оценке структуры валовой стоимости из программного обеспечения "Spectrum" модуля FamPlan;
DOI: 10.17632/pkks98kwz4
title: Data for: Distinguishing punishing costly signals from non-punishing ones can facilitate the emergence of altruistic punishment

description: data and code
DOI: 10.17632/rfhy667ktc
title: METTL14 inhibits malignant progression of oral squamous cell carcinoma by targeting autophagy-related gene RB1CC1 in an m6A-IGF2BP2-dependent manner

description: The original data that supports the research article: "METTL14 inhibits malignant progression of oral squamous cell carcinoma by targeting autophagy-related gene RB1CC1 in an m6A-IGF2BP2-dependent manner".
DOI: 10.17632/tkznd3drt8
title: Thera-prov Pathways to Enhanced Creativity Styles and Optimism in Youth

description: The sample comprised of N=80 youth (age ranging 18-25 years) studying in various colleges of Punjab. The Creative Styles Questionnaire (CSQ) (Kumar and Holman ,1997) and The Optimism-Pessimism Index (OPI) (Dember et al. ,1989) were used to screen individuals who were low on indices of Creative Styles and Optimism respectively. A pre-post experimental control group design was used to assess the efficacy of the intervention. Statistical analysis revealed significant differences between the pre-post experimental and control group.
DOI: 10.17632/vfhdwhxkt3
title: Code for Dissertation

description: Code for Dissertation "Use of Parametric Sensitivities for Multi-Objective Optimisation"
DOI: 10.17632/x8ddj9np34
title: S1

description: This image presents the pipe sewage and manhole sewage of Implementation of the northern trunk line for sewage in Al-Shuhadaa Distract / Mahalla 310 until Al-Rumaila and Al-Dabea / KUT
DOI: 10.17632/y3d3crkzsb
title: Data for: Calibration of MTT assay in proton beams using radiochromic films

description: low energy proton beam dosimetry
DOI: 10.17632/2s47yznh4k
title: significance of social media communication

description: According to the statistical findings from the sample study, following brands on social networking websites or online blogs and using these platforms for daily engagement with others have a significant impact on consumers' intentions to make a purchase. Additionally, consumers who read user comments and reviews on social networking sites and blogs before making a purchase appear to have a purpose for doing so. In a way, their increased use of social media and frequent tweeting have obliged them to keep themselves informed about the most recent developments in a particular brand's product
DOI: 10.17632/65cp5dk4r9
title: Benjamin E Farrant PhD Thesis Electronic Appendix

description: This Electronic Appendix includes supplementary data to that reported within the thesis titled "Mobilisation and Loss of Noble Gas and Halogen Elements During the Impact Melting of Ordinary Chondrites" submitted for a PhD degree at the University of Manchester by Benjamin E Farrant. The spreadsheets contain quantitative electron probe microanalyzer (EPMA) point analysis data from various mineral phases. Data for five meteorites (Chelyabinsk, Chergach, Chico, Gao-Guenie and Kilabo) are provided and the names of the meteorites are named in the spreadsheet filename to indicate which meteorite the data within that spreadsheet relate to. Data for the minerals olivine, low and high-Ca pyroxene, chromite, ilmenite, feldspar, apatite and merrillite as well as data for feldspathic glass are included. Separate tabs within each spreadsheet indicate which mineral the data of that tab are from. These data are used to determine the average mineral chemistries reported within the text of the thesis.
DOI: 10.17632/79twbnwm33
title: International tourism and the food, drink, and tobacco industry: Data for Mexico, 1993Q1 - 2017Q2

description: International tourism has had a positive effect on the Mexican Food, Drink and Tobacco industry. We have found that international tourism, whether measured by the number of tourist arrivals, or by the tourists’ average expenditure, produces a positive effect on the long-run Food, Drinks, and Tobacco Industry (FDTI) real GDP growth. The data we are providing were elaborated by the National Institute of Statistics and Geography, INEGI for its acronym in Spanish, and by the Bank of Mexico, Banxico, for its abbreviation in Spanish. The data refer to the average expenditure of tourists, arrival of international tourists, GDP of the food, drink, and tobacco industry, and the index of the multilateral real exchange rate of the Mexican peso with respect to 111 countries. We are also providing the dummies we employed to estimate the models.
DOI: 10.17632/g6vrw9jjn4
title: WGCNA supplement

description: Statistics accompanying WGCNA from mouse microarray expression of placental genes across gestational age timepoints (original dataset in Knox et al PMID 18340042).
DOI: 10.17632/mr8gjfvsyj
title: Data in Brief-2022

description: Data in Brief off the article entitle: Genomic and proteomic analysis of Vicilin dataset, the 7S globulin from cowpea (Vigna unguiculata) seeds
DOI: 10.17632/n3r454ks8b
title: Supporting data for: Multi-year comparison of community- and species-level West Nile virus antibody prevalence in birds from Atlanta, Georgia and Chicago, Illinois USA 2005 - 2016

description: The data included in this deposition was used to compare incidence of West Nile virus antibody presence/absence (i.e., seroprevalence) in birds sampled in Atlanta, Georgia (2010 - 2016) and Chicago, Illinois (2005 – 2012). Seroprevalence was measured in wild bird sera using ELISA and serum neutralization methods, and seroprevalence among species, year, and location of sampling were compared using generalized linear mixed effects models (GLMMs). Overall findings included higher seroprevalence rates in year round resident birds in each city as well as in birds sampled in Atlanta compared to Chicago. The uploaded data is in .csv format and contains all of the relevant information to reproduce the results in the associated manuscript, "Multi-year comparison of community- and species-level West Nile virus antibody prevalence in birds from Atlanta, Georgia and Chicago, Illinois USA 2005 - 2016", accepted by the American Journal of Tropical Medicine and Hygiene. The accompanying metadata .docx file provides brief explanations of the row and column information. Summary results and figures can be generated from the raw data alone; statistical results and figures should be performed after careful attention to the manuscript. Users can use any program to review and analyze this data. though please note the author's visualized and analyzed this data using R and multiple R packages.
DOI: 10.17632/nsr2mgn2yw
title: Physiochemical Properties of AP2-EREBP Transcription Factor Proteins of Grapes.

description: Bio-computational analysis revealed uneven distribution of 137 AP2/EREBP protein encoding genes through out the plant genome. Bash scripts was used to process and assemble the information under captions TF Name, Peptide Sequence, Length, Aromaticity, GRAVY, pI, M.w and Ins. index. which is given here.
DOI: 10.17632/pd3zv587t2
title: Convergence of Alkaline Earth and Transition Metal Oxide Nanotube Properties Toward the 2D Slab Limit, Computational Investigation for Energy Conversion Implications

description: Nanoscale devices developed from low dimensional materials (one and two dimensional systems) have attracted recently great attention due to their critical applications in micro/nano electromechanics. However, the pragmatic fabrication of the 2D systems is being, frequently, more challenged rather the corresponding 1D ones. Hence, in the current investigation, the convergence of 1D nanotube properties toward the 2D slab limit has been verified and confirmed. In this regard, a variety of geometrical, electronic, and response (mechanical and piezoelectric) properties are computed for both zigzag (n,0) metal oxide MO (M = Be, Mg, Ca, Zn, Cd) nanotubes and MO 2D surfaces, where the variation of such properties as a function of the tube index n; n ranging from 6 to 48 (24 to 192 atoms per cell, respectively), is highlighted. Additionally, the electronic and the nuclear contributions to all aforementioned response properties have been discussed and analyzed. Interestingly, CdO (48,0) nanotube introduces considerable direct and converse piezoelectric constants: e11 = 6.04 jej bohr and d11 = 22.88 pm/V. These electromechanical coefficients are converged so well to the values of the 2D surface, while the response is entirely predominated by the ionic contribution confirming the flexibility and softness. Such findings would make these MO nanotubes as good candidates for nanoscale energy conversion piezoelectric applications.
DOI: 10.17632/pjkrxkvxbc
title: Evo&Med databases

description: Two databases were constructed to assemble just publications  applying evolutionary concepts in medical journals, and they were named Top 50 EvoMed database and Broad Med & Clin Database.
DOI: 10.17632/ssbgmvv9k5
title: #Video Winter grazing of horses in the steppe zone on the border between the Russian Federation and Kazakhstan

description: Shooting time - early March. Place - a steppe zone near the border between the Russian Federation and Kazakhstan. A small herd of horses was seen not far from the excavation site of the enclosed settlements of the Sintashta archaeological culture of the Middle Bronze Age. The same territory contains a relatively large number of unfortified settlements of the Late Bronze Age (Alakul culture). The herd grazes a few kilometers from the village in any weather. Grazing occurs even in severe frost (-15-25) and wind. According to the shepherds, horses do not need shelter to wait out frost, blizzard and wind. However, this is not the only form of keeping horses. The second basic model involves keeping animals in a enclosure along with cows and sheep (the last video). Grass is obtained by breaking a snow crust with a hoof and shoveling off snow.
DOI: 10.17632/26zcy9zz4w
title: Supplementary material for manuscript "Full self-powered relative-humidity sensor based on aluminum-air battery with mono-material electrodes and signal rectification"

description: Supplementary material contains figures in high resolution, raw data, numerical data and code for data extraction.
DOI: 10.17632/86mbrcbd89
title: LDHU3_08.1280

description: DnaJ domain-containing protein | JDP14 | J14
Leishmania donovani (HU3 strain)
DOI: 10.17632/9jf5gphm7z
title: Tourism Arrivals in East African Community 2000 to 2019

description: This data reflects tourism trends ten years after singing of the Treaty establishing the East African Community, and ten years after with the ratification of the Free Movement Protocol. It was used to understand how regional integration affects tourism arrivals using the political economy of East African Community.
DOI: 10.17632/9nsz5chp79
title: Liver vitrification and nanowarming

description: Data for vitrification and nanowarming of rat livers
DOI: 10.17632/9nvpk28kpz
title: Acetate is an Emerging Novel Ketone Body

description: original, unprocessed data
DOI: 10.17632/c5ghfc6ctn
title: DFT-FE 1.0: A massively parallel hybrid CPU-GPU density functional theory code using finite-element discretization

description: We present DFT-FE 1.0, building on DFT-FE 0.6 Motamarri et al. (2020) [28], to conduct fast and accurate large-scale density functional theory (DFT) calculations (reaching ~100,000 electrons) on both many-core CPU and hybrid CPU-GPU computing architectures. This work involves improvements in the real-space formulation—via an improved treatment of the electrostatic interactions that substantially enhances the computational efficiency—as well high-performance computing aspects, including the GPU acceleration of all the key compute kernels in DFT-FE. We demonstrate the accuracy by comparing the ground-state energies, ionic forces and cell stresses on a wide-range of benchmark systems against those obtained from widely used DFT codes. Further, we demonstrate the numerical efficiency of our GPU acceleration, which yields ∼20× speed-up on hybrid CPU-GPU nodes of the Summit supercomputer. Notably, owing to the parallel-scaling of the GPU implementation, we obtain wall-times of 80 - 140 seconds for full ground-state calculations, with stringent accuracy, on benchmark systems containing ~6,000 - 15,000 electrons using 64 - 224 nodes of the Summit supercomputer.
DOI: 10.17632/d5g5f78hcm
title: Laser-Induced Transient Conversion of Rhodochrosite/Polyimide into Multifunctional MnO2/Graphene Electrodes for Energy Storage Applications

description: The origin data for this manuscript.
DOI: 10.17632/d88fk28jbz
title: TRP14 is the rate limiting enzyme for intracellular cystine reduction and regulates proteome cysteinylation. Figure 2C

description: Identification of cysteinylated proteins in parental HEK cells and TRP14 knockdown HEK cells.
For the obtention of cysteinylated cell lysates, both control and TRP14 KD cell cultures were incubated with 250 µM biotinylated cysteine (Cys-BIO) for 1 h, the incubation medium was discarded, cells were washed with ice-cold PBS and collected in 300 µL of lysis buffer containing 50 mM Tris-HCl (pH 7.5), 2 mM EDTA, 150 mM NaCl, 1% Triton, 10 mM N-ethylmaleimide (NEM), and a protease inhibitor cocktail (Sigma-Aldrich, Missouri, USA). Cells were lysed by three freezing-thawing cycles, and cell lysates were centrifuged at 3500 rpm for 10 min to collect supernatants for analysis. Pierce™ Monomeric Avidin Agarose Kit (Thermo Scientific, Massachusetts, USA) was used to purify cysteinylated proteins tagged with biotin according to the manufacturer’s instructions. 
14 µg were loaded in a 1D PAGE gel , which were later in-gel reduced with dithiothreitol (DTT) and S-alkylated with iodoacetamide as previously described50. 
Samples were digested with 100 ng sequencing-grade trypsin (Promega, Madison, USA). The digestion mixture was dried and re-suspended in 20 µL of 2% acetonitrile, and 0.1% trifluoroacetic acid (TFA). 5 µL of sample were loaded onto a trap column (NanoLC Column, 3µ C18-CL, 350 µm x 0.5 mm; Eksigent) and desalted with 0.1% TFA at 2 µL/min during 10 min. Desalted samples were then loaded into an analytical column (LC Column, 3C18-CL-120, 3 µ, 120 Å 75 µm x 15 cm, Eksigent) equilibrated with 5% acetonitrile 0.1% formic acid. Elution was carried out with a linear gradient of 5 to 35% B in A for 60 min (A: 0.1% formic acid; B: acetonitrile, 0.1% formic acid) at a flow rate of 300 nL/min. Eluted samples were analyzed in a mass spectrometer (5600 TripleTOF, ABSCIEX, Massachusetts, USA). Samples were ionized applying 2.8 kV to the spray emitter. Analysis was carried out in a data-dependent mode. Survey MS1 scans were acquired from 350-1250 m/z for 250 ms. The quadrupole resolution was set to ‘UNIT’ for MS2 experiments, which were acquired at 100-1500 m/z for 50 ms in the high sensitivity mode.  Up to 25 ions were selected for fragmentation after each survey scan. Dynamic exclusion was set to 15 s.
ProteinPilot default parameters were used to generate a peak list from 5600 TripleTof wiff files. The Paragon algorithm was used to search the SwisProt database with the parameters: trypsin specificity and cys-alkylation with taxonomy restricted to human, and false discovery rate (FDR) correction for proteins. All eluted samples from all experiments were combined to create a spectra library for differential expression analysis.  Peak View 1.1. software (Sciex, Massachusetts, USA) was used to quantify the areas for all the peptides assigned in the library and the computed areas for proteins.
DOI: 10.17632/fntx8pt8fv
title: Skull and postcranium mophometric linear measurements of Felinae

description: These data are the raw measurements used in the paper "Pleistocene extintion and geographic singularity explain differences in global felid ensemble structure" by MMM & NPG (Evolutionary Ecology, Accepted). These are linear measurements, 31 cranial and 92 postcranial variables describing shape and functional proxies of the entire skeleton of extant felids. They were obtained with calipers to the nearest 0.1 mm. In the uploaded archive there are four sheets which contein the measurements of speciemens used for the different datasets described in the paper: i.e., "skull", "postcranium", "combined" and "combined and reduced" datasets. There are no missing values. In column "Sex": F = female, M = male and U = unknown sex. Given the large number of species, collections and variables that need to be listed we only mention here where to find all this information (all published papers). Illustration and definitions of variables are available in: - Morales M, Giannini NP (2010) Morphofunctional patterns in Neotropical felids: species coexistence and historical assembly. Biol J Linn Soc 100:711-724 - Morales M, Giannini NP (2013) Ecomorphology of the African felid ensemble: the role of the skull and postcranium in determining species segregation and assembling history. J Evol Biol 26:980–992 - the main text and Supplemental Material of Morales M, Giannini NP (Accepted) Pleistocene extintion and geographic singularity explain differences in global felid ensemble structure. Evolutionary Ecology. The list of Collections visited for measuring the specimens and their abbreviations are in "Steps for reproduce" With these data, we statistically demonstrate the existence of nine felid morphotypes at the global scale, whose occurrence is characteristic of different continental or biogeographic ensembles. Phylogenetically explicit analyses show that morphotypes from different felid lineages converged in different continents, but still ensembles remain distinct due to the fact that various morphotypes are missing in several of those ensembles. These quantitative analyses allowed for other qualitative analyses including fossil evidence wich suggests that most of the missing morphotypes were represented by species from those territories that went extinct during the Quaternary. Furthermore, reconstructing the hypothetical felid ensembles before Pleistocene extinctions rendered the continental felid faunas remarkably more similar to each other than they presently are, leaving their remaining, relatively minor differences to outstanding geographic singularities of each continental land mass.
DOI: 10.17632/s62cyycbd3
title: Mixture toxicity of three unconventional gas fracking chemicals barium, o-Cresol and sodium chloride to the freshwater shrimp Paratya australiensis

description: The data within forms additional data (not supplementary) to the article titled "Mixture toxicity of three unconventional gas fracking chemicals barium, o-Cresol and sodium chloride to the freshwater shrimp Paratya australiensis" by Willems et al., 2022