cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9jdp7z
title: Occurrence Download

description: A dataset containing 213580 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anchoa mitchilli (Valenciennes, 1848)"
 ]
}

 The dataset includes 213580 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040528-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8sv5j4
title: Occurrence Download

description: A dataset containing 130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Psophia viridis Spix, 1825",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 130 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009309-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.77d77t
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Actinolema eryngioides Fenzl"
 ]
}

 The dataset includes 112 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015714-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5qp6br
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hydnora sinandevu Beentje & Q.Luke"
 ]
}

 The dataset includes 18 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029689-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9rwahb
title: Occurrence Download

description: A dataset containing 738 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oryzomys palustris texensis J.A.Allen, 1894"
 ]
}

 The dataset includes 738 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008606-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggrp2p
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arabella protomutans Orensanz, 1990",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041473-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kkts6j
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Placocheilus cryptonemus Cui & Li, 1984",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 78 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029622-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.abyxvb
title: Occurrence Download

description: A dataset containing 494 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apteryx Shaw, 1813",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Living Specimen"
 ]
 }
 ]
}

 The dataset includes 494 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008606-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwwd6y
title: Occurrence Download

description: A dataset containing 173 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((138 66.62581, 144 66.62581, 144 67.93333, 138 67.93333, 138 66.62581))"
 ]
}

 The dataset includes 173 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041487-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cy23gj
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypoestes cruenta Benoist"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029654-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n9xoq8
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panthera onca centralis (Mearns, 1901)"
 ]
}

 The dataset includes 42 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008606-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c9kcjb
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Commiphora alata Chiov."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008640-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dvnnb9
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hornstedtia lophophora Ridl."
 ]
}

 The dataset includes 14 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029761-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.o6fpy2
title: Occurrence Download

description: A dataset containing 1016 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Disa bracteata Sw."
 ]
}

 The dataset includes 1016 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008606-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xr2e25
title: Occurrence Download

description: A dataset containing 306 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cotoneaster rotundifolius Wall. ex Lindl."
 ]
}

 The dataset includes 306 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008639-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p5mhay
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Garra cyrano Kottelat, 2000",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029574-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bzoimt
title: Occurrence Download

description: A dataset containing 51438 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Dinoflagelados y Diatomeas del Pacífico tropical mexicano"
 ]
}

 The dataset includes 51438 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010503-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yndxbd
title: Occurrence Download

description: A dataset containing 246 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Actinostachys laevigata (Mett.) C.F.Reed"
 ]
}

 The dataset includes 246 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015728-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k2bhju
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Garra fuliginosa Fowler, 1934",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 30 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029579-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tw2acb
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paepalanthus gentlei Moldenke",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008606-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.arfr6b
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "TaxonKey is Maytenus senegalensis (Lam.) Exell"
 ]
}

 The dataset includes 165 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040533-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cmtvff
title: Occurrence Download

description: A dataset listing the 9 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zamia integrifolia L.f."
 ]
}

 The dataset's 9 records were derived from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029594-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.26mbqv
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "GadmGid is ECU.4_1",
 "TaxonKey is Pristimantis myersi (Goin & Cochran, 1963)"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021738-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.79mtf5
title: Occurrence Download

description: A dataset containing 2454 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"5878492","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 2454 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021739-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8hjwns
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Stanhopea whittenii Soto Arenas, Salazar & G.Gerlach"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021740-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eymdjd
title: Occurrence Download

description: A dataset containing 57328 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"1820372","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 57328 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021742-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13736754
title: Sequence-dependent activity and compartmentalization of foreign DNA in a eukaryotic nucleus

description: Genomic sequences co-evolve with DNA-associated proteins to ensure the multiscale folding of long DNA molecules into functional chromosomes. In eukaryotes, different molecular complexes organize the chromosome's hierarchical structure, ranging from nucleosomes and  cohesin-mediated DNA loops to large scale chromatin compartments. To explore the relationships between the DNA sequence composition and the spontaneous loading and activity of these DNA-associated complexes in the absence of co-evolution, we characterized chromatin assembly and activity in yeast strains carrying exogenous bacterial chromosomes that diverged from eukaryotic sequences over 1.5 billion years ago. We show that nucleosome assembly, transcriptional activity, cohesin-mediated looping, and chromatin compartmentalization can occur in bacterial chromosomes in a eukaryotic host, and that two different chromatin archetypes are formed depending on sequence composition. These results are a step forward in understanding how foreign sequences are interpreted by a host nuclear machinery during natural horizontal gene transfers, as well as in synthetic genomics projects.
DOI: 10.5281/zenodo.7198985
title: Sequence-dependent activity and compartmentalization of foreign DNA in a eukaryotic nucleus

description: Genomic sequences co-evolve with DNA-associated proteins to ensure the multiscale folding of long DNA molecules into functional chromosomes. In eukaryotes, different molecular complexes organize the chromosome's hierarchical structure, ranging from nucleosomes and  cohesin-mediated DNA loops to large scale chromatin compartments. To explore the relationships between the DNA sequence composition and the spontaneous loading and activity of these DNA-associated complexes in the absence of co-evolution, we characterized chromatin assembly and activity in yeast strains carrying exogenous bacterial chromosomes that diverged from eukaryotic sequences over 1.5 billion years ago. We show that nucleosome assembly, transcriptional activity, cohesin-mediated looping, and chromatin compartmentalization can occur in bacterial chromosomes in a eukaryotic host, and that two different chromatin archetypes are formed for two highly divergent genomes. These results are a step forward in understanding how foreign sequences are interpreted by a host nuclear machinery during natural horizontal gene transfers, as well as in synthetic genomics projects.
DOI: 10.5281/zenodo.14024599
title: Sequence-dependent activity and compartmentalization of foreign DNA in a eukaryotic nucleus

description: In eukaryotes, DNA-associated protein complexes co-evolve with genomic sequence to orchestrate chromatin folding. Here, we investigate the relationship between DNA sequence and the spontaneous loading and activity of chromatin components in the absence of co-evolution. Using bacterial genomes integrated into S. cerevisiae, which diverged from yeast 1.5 billion years ago, we show that nucleosomes, cohesins and the transcriptional machinery can lead to the formation of two different chromatin archetypes, one transcribed and the other silent, independently of heterochromatin formation. These two archetypes also form on eukaryotic exogenous sequences, depend on sequence composition, and can be predicted using neural networks trained on the native genome. They do not mix in the nucleus, leading to a bipartite nuclear compartmentalization, reminiscent of the organization of vertebrate nuclei.
DOI: 10.5281/zenodo.7198984
title: Sequence-dependent activity and compartmentalization of foreign DNA in a eukaryotic nucleus

description: In eukaryotes, DNA-associated protein complexes co-evolve with genomic sequence to orchestrate chromatin folding. Here, we investigate the relationship between DNA sequence and the spontaneous loading and activity of chromatin components in the absence of co-evolution. Using bacterial genomes integrated into S. cerevisiae, which diverged from yeast 1.5 billion years ago, we show that nucleosomes, cohesins and the transcriptional machinery can lead to the formation of two different chromatin archetypes, one transcribed and the other silent, independently of heterochromatin formation. These two archetypes also form on eukaryotic exogenous sequences, depend on sequence composition, and can be predicted using neural networks trained on the native genome. They do not mix in the nucleus, leading to a bipartite nuclear compartmentalization, reminiscent of the organization of vertebrate nuclei.
DOI: 10.15468/dl.9uwc4c
title: Occurrence Download

description: A dataset containing 2002612315 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves"
 ]
}

 The dataset includes 2002612315 records from 15344 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021305-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bxuxru
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Damnacanthus hainanensis (H.S.Lo) Y.Z.Ruan"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020958-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8qdvby
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "Locality is Simolândia",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 1 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0143310-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xg3ftc
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Columnea tandapiana (Wiehler) L.E.Skog & L.P.Kvist"
 ]
}

 The dataset includes 55 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0143297-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11095175
title: LHCM
DOI: 10.5281/zenodo.11095176
title: Grupo_3
DOI: 10.15468/dl.bj64e2
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-62.47489 54.13757,-101.71532 26.01113,-89.83992 15.90264,-76.93189 13.90696,37.17514 14.9071,45.9526 54.13757,-34.07721 69.75585,-62.47489 54.13757))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is January",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhincodon typus Smith, 1828",
 "Year 2010-2011"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032562-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmwey9
title: Occurrence Download

description: A dataset containing 2314 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Fossil, Living Specimen, Occurrence evidence, Specimen, Material sample)",
 "Country is China",
 "TaxonKey is Triadica sebifera (L.) Small",
 "Year 1950-2023"
 ]
}

 The dataset includes 2314 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026380-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.grg7qs
title: Occurrence Download

description: A dataset containing 383 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Inventario de Peces del SFF Isla Malpelo, Proyecto Colombia Bio"
 ]
}

 The dataset includes 383 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0143340-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qzwqgf
title: Occurrence Download

description: A dataset containing 64518 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Hexacorallians of the world"
 ]
}

 The dataset includes 64518 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040091-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.