cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.7r5d56c/8
title: rodent data both peaks and seasons Myodes rufocanus

description: Myodes rufocanus numbers during both peaks and seasons.
DOI: 10.5061/dryad.7r5d56c/9
title: rodent data both peaks and seasons Lemmus lemmus

description: Lemmus lemmus numbers for both peaks and seasons.
DOI: 10.5061/dryad.8302n83/1
title: Concussion BASICS Supplementary Tables

description: Supplementary tables corresponding to the Concussion BASICS project.  Tables A and B are relevant to Concussion BASICS: Part 1 - The Normative Study.  Table C is relevant to Concussion BASICS: Part 3 - Diagnostic Accuracy Following Sport-Related COncussion
DOI: 10.5061/dryad.94t550j/1
title: R Scripts, empirical and simulated data for 12 insular radiations

description: Once unzipped, the folder "IUCN status of species" lists the species in each radiation, and their IUCN status (1, threatened; 0, non-threatened). The folder "Scripts for calculation of Bayes Factors" contains the two R scripts used to calculate Bayes Factors and obtain box plots. The folder "Scripts to obtain branch lengths" contains the R scripts used for each of the three main models (Constant birth-death, Aging and Shift) to identify threatened species, prune extinct species, and obtain branch lengths of threatened species across the simulations. The folder “Simulated Data” contains the branch lengths of species across simulations. For each simulated tree, branch lengths of threatened species follow the column “threatened spp”. The folder “Trees” contains the six pseudo-empirical trees used in the validation test, and twelve empirical trees used in the final analyses.
DOI: 10.5061/dryad.cq2k7sq/1
title: Sooty mould data from Box 2
DOI: 10.5061/dryad.f1vn500/1
title: Supplementary files_YOno_BMJ open_2018
DOI: 10.5061/dryad.f5g2482/2
title: StarBEAST_exons

description: Zipped folder with 100 phased allele exon data
DOI: 10.5061/dryad.f5g2482/3
title: EC_pipeline

description: Zipped folder with exon-capture Unix shell scripts
DOI: 10.5061/dryad.f5g2482/4
title: Gene_Table_v3

description: Microsoft Excel file containing information on exon-capture target (genes and exons)
DOI: 10.5061/dryad.f5g2482/5
title: Ophiocomid_Dryad_ReadMe_v1

description: Information on files in this Dryad package
DOI: 10.5061/dryad.gb90p1c.2
title: Data from: The pyriform egg of the Common Murre (Uria aalge) is more stable on sloping surfaces
DOI: 10.5061/dryad.j2p2h3s/1
title: Montrave_cuecount

description: Raw cue count data from songbirds at Montrave Estate, Scotland, originally presented in Buckland ST (2006). Point transect surveys for songbirds: robust methodologies. The Auk 123:345–357, and reanalyzed by Howe, Buckland, Despres-Einspenner, and Kuehl (2018). Model selection with overdispersed distance sampling data. Data were copied from program Distance and uploaded as a .csv file. A Distance project file is available at distancesampling.org.
DOI: 10.5061/dryad.js734c0/1
title: Dataset_S1-mate_counts

description: Data table listing the parental species used to generate a population of hybrids and the number of males that received matings during mate-choice experiments conducted en masse. The column "hyb_mate" gives the number of hybrid males from the same population as the females in a given experiment that females mated with. Each row reports the matings of a single hybrid population of females at 10 generations after the initial cross. Additional columns report results from statistical tests reported in the main text.
DOI: 10.5061/dryad.m0s82c3/1
title: Hamming distance matrix - Pseudophyne coriacea

description: SNP Hamming distance values between siblings, adults and offspring from a population of Pseudophryne coriacea .
DOI: 10.5061/dryad.mh352th/1
title: Saxena et al-Figure 2
DOI: 10.5061/dryad.mh352th/2
title: Saxena et al-Figure 3
DOI: 10.5061/dryad.mh352th/3
title: Saxena et al-Figure 4
DOI: 10.5061/dryad.mh352th/4
title: Saxena et al-Figure 5
DOI: 10.5061/dryad.qg1b2n0/1
title: Supplementary File 1: R Code and output - Demographic Analysis

description: This is a stand alone report containing the code and output of an R script, which was generated by the "Compile Report" function in RStudio (R Statistical Software package (version 3.2.4 (2016-03-10))). This code summarizes the demographic, obstetric, and sleep behaviour of the participants (collected via a questionnaire completed by each participant on her first sleep test) and compares these data between all participants whose first sleep test was PrenaBelt (followed by sham-PrenaBelt on the second sleep test) versus all participants whose first sleep test was sham-PrenaBelt (followed by PrenaBelt on the second sleep test).
DOI: 10.5061/dryad.qg1b2n0/2
title: Supplementary File 2: R Code and output - PSG Analysis

description: This is a stand alone report containing the code and output of an R script, which was generated by the "Compile Report" function in RStudio (R Statistical Software package (version 3.2.4 (2016-03-10))). This code processes the polysomnography (PSG) sleep reports in full, making within-participant (paired) comparisons and between-participant (unpaired) comparisons. The sleep reports were generated by Embla Sandman Elite sleep diagnostic software (Natus Medical Incorporated, Pleasanton, USA). The data in the PSG sleep reports was collected via Pro-Tech zRIP Durabelts (Philips Respironics, Murrysville, USA) for respiration, PT1 pressure transducers (BRAEBON Medical Corporation, Kanata, Canada) for airflow and snoring, electrodes (Natus Medical Incorporated, Pleasanton, USA) for ECG/EEG/EOG/EMG, and finger-tip pulse oximetry for peripheral blood oxygen saturation (SpO2) in accordance with the American Academy of Sleep Medicine 2014 guidelines. Audio and video data were also recorded and used in order to determine body position and snoring.
DOI: 10.5061/dryad.qg1b2n0/3
title: Supplementary File 3: R Code and output - Feedback Analysis

description: This is a stand alone report containing the code and output of an R script, which was generated by the "Compile Report" function in RStudio (R Statistical Software package (version 3.2.4 (2016-03-10))). This code processes the participants' feedback on the PrenaBelt (collected via a questionnaire completed by each participant after each sleep test). It summarizes these data, completes within-participant (paired) comparison of these data ("before/after"), and completes between-participants (unpaired) comparison of these data (bulk test for differences between all PrenaBelt sleep test nights versus all sham-PrenaBelt nights).
DOI: 10.5061/dryad.qg1b2n0/4
title: Supplementary File 4: R Code and output - Self-Report Accuracy Analysis

description: This is a stand alone report containing the code and output of an R script, which was generated by the "Compile Report" function in RStudio (R Statistical Software package (version 3.2.4 (2016-03-10))). This code compares each participant's perception of her sleep behaviours (collected via a questionnaire completed by each participant after each sleep test) to her polysomnography-determined sleep behaviours (collected via audio and video and Embla Sandman Elite sleep diagnostic software (Natus Medical Incorporated, Pleasanton, USA)) in order to determine the ability of participants to accurately recall their sleep onset position, waking position, number of position changes during the night, and percentage of sleep time in each position.
DOI: 10.5061/dryad.t22jv/1
title: STD

description: Outatients with at least one sexually transmitted disease diagnosed ifollowed by urologists in Germany between 2013 and 2015
DOI: 10.5061/dryad.tq61224/1
title: Berridge 2018 Supplementary data

description: Supplementary Data Berridge et al submitted to Neurology. Glutamate receptor delta2 serum antibodies in paediatric opsoclonus myoclonus ataxia syndrome. Data on proteins identified and clinical subjects who harbour autoantibodies to the protein Glutamate receptor delta2
DOI: 10.5061/dryad.v0q5035/1
title: Data and R code for spatial PVA of Sonoran desert tortoises

description: This zip directory contains the data and R code required to reproduce the analyses in the associated paper.
DOI: 10.5061/dryad.vg81ns6/1
title: Koenig_etal1,csv

description: Acorn production, DBH, mean mistletoe abundance, and dendrometer growth by tree and year (one record for each year)
DOI: 10.5061/dryad.vv36g/10
title: Raw images - DAMO-MAIV

description: Raw images (JPEG) files from cameras at Damoy Point, George's Point, Half Moon Island, Port Lockroy and Maiviken - DAMO (1), GEOR (1), HALF (2), LOCK (1) and MAIV (4), respectively. Numbers in parentheses denote the number of separate folders associated with each camera location. Each image shows the date, time, moon phase and temperature alongside the photograph. Individual images are named in the following format: SITExYEARx_imagenumber.JPG. For more information please refer to the associated paper.
DOI: 10.17632/4j9kjkdwhx.1
title: Data for: WEEC: Web Energy Efficient Computing A Machine Learning Approach

description: Contains dataset generated during WEEC research.
DOI: 10.17632/4mtwftdtpd.1
title: Data for: Antimicrobial potential of pyroligneous extracts – a systematic review and technology prospecting
DOI: 10.17632/t2b8twhnzm.2
title: Data for: Aspect ratio control and photocatalytic properties analysis of anatase TiO2 nanoparticles

description: FTIR, TEM, UV-vis, UV-vis DRS, XRD
DOI: 10.5061/dryad.16r2v07/1
title: PB2 xml

description: XML file used to infer MCC tree for PB2 sequences (pandemic H1N1 lineage)
DOI: 10.5061/dryad.16r2v07/2
title: PB1 xml

description: XML file used to infer MCC tree for PB1 sequences (pandemic H1N1 lineage)
DOI: 10.5061/dryad.16r2v07/3
title: PA xml

description: XML file used to infer MCC tree for PA sequences (pandemic H1N1 lineage)
DOI: 10.5061/dryad.16r2v07/4
title: HA xml

description: XML file used to infer MCC tree for HA sequences (Eurasian swine lineage)
DOI: 10.5061/dryad.16r2v07/5
title: NP xml

description: XML file used to infer MCC tree for NP sequences (pandemic H1N1 lineage)
DOI: 10.5061/dryad.16r2v07/6
title: NA xml

description: XML file used to infer MCC tree for NA sequences (Eurasian swine H1N1 lineage)
DOI: 10.5061/dryad.16r2v07/7
title: MP xml

description: XML file used to infer MCC tree for MP sequences (pandemic H1N1 lineage)
DOI: 10.5061/dryad.16r2v07/8
title: NS xml

description: XML file used to infer MCC tree for NS sequences (North American swine triple reassortant lineage), with phylogeography/Markov jumps
DOI: 10.5061/dryad.1n1p0b5.1
title: Data from: The putative lissamphibian stem-group: phylogeny and evolution of the dissorophoid temnospondyls
DOI: 10.5061/dryad.1n1p0b5.1/1.1
title: Schoch_Dis_Appendix 1

description: List of morphological characters for phylogenetic analysis
DOI: 10.5061/dryad.1n1p0b5.2
title: Data from: The putative lissamphibian stem-group: phylogeny and evolution of the dissorophoid temnospondyls
DOI: 10.5061/dryad.1n1p0b5.2/1.2
title: Schoch_Dis_Appendix 1

description: List of morphological characters for phylogenetic analysis
DOI: 10.5061/dryad.1n1p0b5.2/2.2
title: Schoch_Dis_Appendix 2

description: Appendix 2: Character-taxon matrix.
DOI: 10.5061/dryad.2td21/1
title: Transcripts_RA

description: The Trinity unigenes assembled from RNA seq of leaf and flower tissue were clustered (95% identity) and filtered to obtain a master file containing only non-redundant transcripts (&gt;500bp).
DOI: 10.5061/dryad.30nj0tb/1
title: Plant&Insect_Data_Grinath_2018_E&E.csv

description: Data for plant-insect communities evaluated by Grinath (2018).
DOI: 10.5061/dryad.3rh2043/2
title: CBB_damage_dryad_2_JAPPL_2017_01146.R2

description: Data set with total number of coffee berries and damage inside bored berries. Used to test CBB damage, efficiency of the intensity of pest control service by ants.
DOI: 10.5061/dryad.4s20483/1
title: Data Cohen et al 2018 Ecography

description: Raw stable isotope values from feathers and toenails of individual migrating birds captured at three sites over three years.
DOI: 10.5061/dryad.5543625/1
title: Simulation code

description: 2 folders: 1 for simulation with autosomal inheritance of dispersal genes. 1 for sex-linked inheritance of dispersal genes.
DOI: 10.5061/dryad.5n18790/1
title: Genotypes_microsatellites_six_regions

description: The genotype data (eight microsatellite loci) for all individuals from each of two regions of Rana pretiosa and four regions of Rana luteiventris are provided. There is a csv file for each region. Within each region, the data are organized by sampling site (see Table 1 for locality information).
DOI: 10.5061/dryad.63nm407/2
title: filtered-geno-0.2-maf-0.05-mind-0.9
DOI: 10.5061/dryad.63nm407/3
title: 169 NZFS - NCBI accession numbers

description: 169 NZFS - NCBI accession numbers
DOI: 10.5061/dryad.7f1h767/10
title: Ts1.4_cl3_V_IV

description: Activation data for Nav1.4 V clone
DOI: 10.5061/dryad.7f1h767/11
title: TTXcalc_Ts1.4_V_cl3_UDB

description: TTX data for Nav1.4 V clone
DOI: 10.5061/dryad.7f1h767/9
title: Ts1.4_cl3_V_FI

description: Fast inactivation data for Nav1.4 V clone
DOI: 10.5061/dryad.85jn3/1
title: Data matrices of concatenated SNPs - iPYRAD

description: Data matrices for the concatenated SNPs (.phy) for each one of the ipyrad assembly methods. .map files contains information about SNP position in each locus. This information will be used by tetrad to sample only one SNP per locus when analyzing each quartet sample in the analysis.
DOI: 10.5061/dryad.85jn3/2
title: atelidae.tar.gz

description: Raw reads for the samples belonging to the Atelidae family
DOI: 10.5061/dryad.85jn3/3
title: OWM.tar.gz

description: Raw reads for the samples belonging to the Old World Monkeys
DOI: 10.5061/dryad.85jn3/7
title: Samples used in this study

description: Samples used in the phylogenetic study. Each sample has an associated code that corresponds to the name of the files of the R1 and R2 raw reads.
DOI: 10.5061/dryad.85q7846/1
title: PLOS ONE
DOI: 10.5061/dryad.bh39282/1
title: det_head_u2
DOI: 10.5061/dryad.bh39282/2
title: Zubal_Complete_Head_Reverse_ImageStack_Single_Mask_mphtxt
DOI: 10.5061/dryad.bh39282/3
title: Zubal_Complete_Head_Reverse_ImageStack_Single_Mask_nas
DOI: 10.5061/dryad.bh39282/4
title: Zubal_Complete_Head_Reverse_ImageStack_Single_Mask_stl
DOI: 10.5061/dryad.bh39282/5
title: Zubal_Complete_Head_Solution_Hex_Finer_Mesh
DOI: 10.5061/dryad.bh39282/6
title: a_conductivity_output_3D_reverse_offset_omit_outside_1e+09
DOI: 10.5061/dryad.bh39282/7
title: a_permittivity_output_3D_reverse_offset_omit_outside_1e+09
DOI: 10.5061/dryad.ch3k2s1/1
title: R code for analyzing "raw_data_dryad.csv"

description: R code for analyzing and visualizing accelerometer data
DOI: 10.5061/dryad.ch3k2s1/3
title: Tamias alpinus and Tamias speciosus accelerometer raw data compiled & cropped

description: All data both species compiled - USE THIS DATA FOR THE R CODE
DOI: 10.5061/dryad.ch3k2s1/5
title: sp_gc_glmm_full_11apr

description: This is the file that contains information for automatically adding species co-occurrence score to the accelerometer data using the provided R script. This file is for Tamias speciosus.
DOI: 10.5061/dryad.ch3k2s1/6
title: al_gc_glmm_full_11apr

description: This is the file that contains information for automatically adding species co-occurrence score to the accelerometer data using the provided R script. This file is for Tamias alpinus.
DOI: 10.5061/dryad.fm3j82j/1
title: Navigating Infection Risk Data

description: Data gathered from 2 behavioral choice experiments on distinct developmental stages of Drosophila. Both experiments were conducted under laboratory conditions. Larvae were given the choice of cannibalising an infectious or non-infectious carcass and infected or healthy mated females were given the choice of laying eggs on 3 potential oviposition sites containing: food, food and a dead fly or food and a dead infected fly. Following these choice assays we measured the developmental and pathological consequences of these decisions, in the form of egg-to-adult viability and pathogen load.
DOI: 10.5061/dryad.fm8nv86/1
title: Han_etal_2018_Evolution_datafile
DOI: 10.5061/dryad.hf068m7/1
title: Panulirus_homarus_genotypes

description: This excel file contains genotypic data and geographic information for Panulirus homarus. It is in GenALex format.
DOI: 10.5061/dryad.hf068m7/2
title: Geneland_code

description: This file contains an R script for running Geneland analysis.
DOI: 10.5061/dryad.hr2t3m3/1
title: Preferred body temperatures of newt larvae

description: Parameters of preferred body temperatures in larvae of two newt species reared under the presence or absence of heterospecifics.
DOI: 10.5061/dryad.hr2t3m3/2
title: Thermoregulatory indices in larvae of two newt species

description: Thermoregulatory indices of larvae exposed to intra- or interspecific social interactions.
DOI: 10.5061/dryad.hr2t3m3/3
title: Growth rates in newt larvae

description: Growth rates of larvae in two newt species exposed to three thermally fluctuating regimes.
DOI: 10.5061/dryad.js734c0/2
title: Dataset_S2-hybrid-v-hybrid-mate-counts

description: Mate counts for populations of admixed Drosophila given the choice to mate with males of their parental species, males from their same population, or males from an independent population derived from the same parental cross. Integers given in columns labeled "hybrid_1" and "hybrid_2" are used as identifiers of the hybrid population used in a given mate-choice experiment. Each row represents a single mate-choice experiment conducted en masse. Data are presented in Figure 2 of the main text.
DOI: 10.5061/dryad.js734c0/3
title: Dataset_S3-tri-parental-mate-choice

description: Mate counts for populations of admixed Drosophila produced by crossing three parental species. This data table reports the number matings occurring between hybrid females produced by crossing three parental species ("sp_1", "sp_2", and "sp_3") and each of the three parental male genotypes and hybrid male genotypes. Mating experiments were conducted 10 generations after the initial tri-parental cross. Each line reports mate choices of females from the same population of hybrids. Data are presented in Figure 3 of the main text.
DOI: 10.5061/dryad.kp0rc5s/1
title: DWH

description: Zip file containing all R scripts and original data files (including site coordinates) used in the publication of Alvarez, et al. 2018.
DOI: 10.5061/dryad.m83jc20/1
title: 1a_R1.fastq

description: NGS library 1a R1 raw reads
DOI: 10.5061/dryad.m83jc20/2
title: 1a_R2.fastq

description: NGS library 1a R2 raw reads
DOI: 10.5061/dryad.m83jc20/3
title: 2a_R1.fastq

description: NGS library 2a R1 raw reads
DOI: 10.5061/dryad.m83jc20/4
title: 2a_R2.fastq

description: NGS library 2a R2 raw reads
DOI: 10.5061/dryad.m83jc20/5
title: 3a1_R1.fastq

description: NGS library 3a1 R1 raw reads (Limnoperna fortunei; n=1)
DOI: 10.5061/dryad.m83jc20/6
title: 3a1_R2.fastq

description: NGS library 3a1 R2 raw reads (Limnoperna fortunei; n=1)
DOI: 10.5061/dryad.s27v5b0/1
title: DATA_Teerikorpi_etal_2018

description: The data set is composed of one excel file with two data sheets. One sheet is for population level analyses and the other one is for individual level analysis. Data includes an environmental variable (NAO index)  describing environmental conditions at the wintering areas of pied flycatchers in Sub-Saharan Africa (1983-2014) and phenotypic (wing patch size) information of male pied flycatcher individuals caught during the breeding seasons (1983-2014) in Turku and Siuntio, Finland.
DOI: 10.5061/dryad.s27v5b0/2
title: SAS_codes_Teerikorpi_etal.2018

description: SAS codes for the analyses conducted in Teerikorpi et al. 2018
DOI: 10.5061/dryad.t1f10sr/1
title: Nematode_data_wilschutetal

description: File contains nematode counts (per 100 g dry weight soil) of the major nematode feeding types and several root-feeding nematode families and genera, and relative counts of root-feeding nematode groups (per gram of root).
DOI: 10.5061/dryad.vg81ns6/2
title: Koenig_etal2.csv

description: Mean acorn production, DBH, mean mistletoe abundance, and survival of trees (one record for each tree)
DOI: 10.5061/dryad.vg81ns6/3
title: Koenig_etal3.csv

description: Mean acorn production, DBH, mean mistletoe abundance, and ecological variables (one record for each tree)
DOI: 10.6069/uwlib.55.a.2.3
title: Instances of the WebResource Class

description: Instances of the class  represented in the University of Washington digital collections; the class is taken from the Digital Public Library Metadata of America Application Profile 5.0
DOI: 10.17632/92kmsggcgd.1
title: Data for: Mapping spatiotemporal dynamics of maize in China from 2005 to 2017 through designing leaf moisture based indicator from Normalized Multi-band Drought Index

description: The spatial distribution map of maize in 2017. The maize map is derived by a novel Maize mapping algorithm proposed through Exploring Leaf moisture variation during flowering Stage (MELS).
DOI: 10.17632/956j8wv7zm.1
title: Data for: Duplex nested-PCR for detection of small ruminant lentiviruses
DOI: 10.17632/dcpnfdywmr.1
title: Data for: Early Agriculture in Sri Lanka: New Archaeobotanical Analyses and Radiocarbon Dates from the Early Historic Sites of Kirinda and Kantharodai

description: OxCal Graphs for Radiocarbon dates
DOI: 10.17632/mf5ymsjnvj.1
title: Data for: Effect of Al2O3 and La2O3 on structure and spectroscopic properties of Nd-doped sol–gel silica glasses

description: Emission spectra of NAS and NLAS;FTIR absorption spectra of the series of NLAS glasses; Fluorescence decay curves of the 4I13/2 energy level of Nd3+-doped NLAS glasses
DOI: 10.5061/dryad.1g2nt41/1
title: Convolutional Neural Network - CS256-FC256

description: Convolutional Neural Network (CNN) trained for patch-based classification of invasive breast cancer from histopathology digital images. The CNN architecture is 256 units in convolution and pooling layers, 256 units of fully connected layer and 2 units for output classification layer of softmax. The model was trained with Torch7.
DOI: 10.5061/dryad.1g2nt41/2
title: XML annotations by HG of WSIs from CINJ

description: XML region-based annotations by HG pathologist of whole-slide images (WSIs) from CINJ institution data cohort.
DOI: 10.5061/dryad.1g2nt41/3
title: XML annotations by MF and NS of WSIs from CINJ

description: XML region-based annotations by MF and NS pathologists of whole-slide images (WSIs) from CINJ institution data cohort.
DOI: 10.5061/dryad.1g2nt41/4
title: XML annotations by HG of WSIs from TCGA

description: XML region-based annotations by HG pathologist of whole-slide images (WSIs) from TCGA institution data cohort subset used in the paper.
DOI: 10.5061/dryad.1g2nt41/6
title: TCGA scaled images

description: 195 TCGA scaled images used as D_test to test HASHI method.
DOI: 10.5061/dryad.1g2nt41/7
title: UHCMC/CWRU scaled images

description: 110 UHCMC/CWRU scaled images used as D_2 dataset as part of Whole-Slide Image training data set.
DOI: 10.5061/dryad.1g2nt41/8
title: CINJ scaled images

description: 40 CINJ scaled images used as D_4 dataset as part of Whole-slide Image validation data set.
DOI: 10.5061/dryad.24b7j2b/1
title: MC_GBS_L50_MD30

description: 3341 loci analysed for this study. Individuals have less than 30% missing data.
DOI: 10.5061/dryad.24b7j2b/2
title: Neighbour joining majority rule consensus tree

description: Neighbour joining majority rule consensus tree with random sampling haplotypes, obtained using the RRHS software (1000 replicates).
DOI: 10.5061/dryad.84g36m4/1
title: Supplementary Table 1

description: Supplementary Table 1 – 210Pb sediment data (with standard deviations) measures at three stations.
DOI: 10.5061/dryad.84g36m4/2
title: Supplementary Table 2

description: Supplementary Table 2 – Amino acid racemization and calibrated age data of Corbula gibba from two Po stations (analyzed in this paper), from the Bay of Panzano (Tomasovych et al. 2017, Geology, and analyzed this paper), and from Piran (Mautner et al. 2018, Marine Pollution Bulletin).
DOI: 10.5061/dryad.85jn3/4
title: cebidae.tar.gz

description: Raw reads for the samples belonging to the Cebidae family