cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23719/1523054
title: EPA Facilities Status Dashboard

description: A portion of the data used is publicly available through John Hopkins Coronavirus Resource Center and CDC COVID Data Tracker. Another portion data is password protected through HHS Protect.
DOI: 10.23719/1530097
title: High-Throughput Transcriptomics Screen of ToxCast Chemicals in U-2 OS Cells

description: Supplemental datafiles for journal article 'High-Throughput Transcriptomics Screen of ToxCast Chemicals in U-2 OS Cells'.
DOI: 10.15151/esrf-es-1442315662
title: Investigating the local structure and oxidation state of surface iron-sites in tremolite asbestos

description: Toxicity/carcinogenicity of Fe-bearing mineral fibers is driven by the structural, coordinative, and oxidative states of the Fe sites on the fibers’ surface, which is the actual interface between the fibers and the biological tissues. However, the specific conditions that make Fe sites able to induce free radical generation are not clear yet. To investigate this matter, we propose to perform total reflection X-ray absorption spectroscopy on tremolite asbestos, with the aim to unravel the surface state of the Fe sites and compare it with their bulk counterpart. The result will complement previous bulk X-ray absorption spectroscopy measurements in model systems (LS3052) and nano-X-ray diffraction measurements on single asbestos fibers (LS3009) performed during round 4/2021.
DOI: 10.6084/m9.figshare.25283101
title: Supplementary Material for: Oestrogen receptor positive metastatic eccrine porocarcinoma: A case report and review of anti-oestrogen therapy in rare cancers.

description: Rare cancers, in aggregate, represent a significant burden of disease in oncology, and remain therapeutically challenging to manage due to a lack of clinical trials. Eccrine porocarcinoma is a rare cutaneous sweat gland malignancy for which there remains no standard approach to metastatic disease. We describe a patient diagnosed with metastatic disease, confirmed on bone biopsy; pathological analysis further revealed this was oestrogen receptor positive. She was commenced on the aromatase inhibitor letrozole and denosumab, and showed a significant clinical and radiological response on bone scan within 7 months. At the time of report, over 2-years since commencing letrozole, she remains well with no evidence of progression. Our experience adds to the literature suggesting anti-oestrogen therapy can have significant benefit in patients with ER positive non-breast cancer, and is in keeping with increasing interest in therapies agnostic to site of origin but guided by expression/mutation of oncogenic drivers.
DOI: 10.6084/m9.figshare.25283101.v1
title: Supplementary Material for: Oestrogen receptor positive metastatic eccrine porocarcinoma: A case report and review of anti-oestrogen therapy in rare cancers.

description: Rare cancers, in aggregate, represent a significant burden of disease in oncology, and remain therapeutically challenging to manage due to a lack of clinical trials. Eccrine porocarcinoma is a rare cutaneous sweat gland malignancy for which there remains no standard approach to metastatic disease. We describe a patient diagnosed with metastatic disease, confirmed on bone biopsy; pathological analysis further revealed this was oestrogen receptor positive. She was commenced on the aromatase inhibitor letrozole and denosumab, and showed a significant clinical and radiological response on bone scan within 7 months. At the time of report, over 2-years since commencing letrozole, she remains well with no evidence of progression. Our experience adds to the literature suggesting anti-oestrogen therapy can have significant benefit in patients with ER positive non-breast cancer, and is in keeping with increasing interest in therapies agnostic to site of origin but guided by expression/mutation of oncogenic drivers.
DOI: 10.6084/m9.figshare.25283104
title: Supplementary Material for: Cerebral artery overexpression of the NMUR1 gene is associated with moyamoya disease: a weighted gene co-expression network analysis

description: Introduction: This study aimed to elucidate mechanisms underlying moyamoya disease (MMD) pathogenesis and to identify potential novel biomarkers. We utilized gene coexpression networks to identify hub genes associated with the disease. 
Methods: Twenty-one middle cerebral artery (MCA) samples from MMD patients and 11 MCA control samples were obtained from the Gene Expression Omnibus (GEO) dataset, GSE189993. To discover functional pathways and potential biomarkers, weighted gene coexpression network analysis (WGCNA) was employed. The hub genes identified were re-assessed through differential gene expression analysis (DGEA) via DESeq2 for further reliability verification. An additional 4 samples from the superficial temporal arteries (STA) from MMD patients were obtained from GSE141025 and a subgroup analysis stratified by arterial type (MCA vs. STA) DGEA was performed to assess if the hub genes associated with MMD are expressed significantly greater on the affected arteries compared to healthy ones in MMD.
Results: WGCNA revealed a predominant module encompassing 139 hub genes, predominantly associated with the neuroactive ligand-receptor interaction (NLRI) pathway. Of those, 17 genes were validated as significantly differentially expressed. Neuromedin U receptor 1 (NMUR1) and thyrotropin-releasing hormone (TRH) were 2 out of the 17 hub genes involved in the NLRI pathway (log fold change [logFC]: 1.150, p = 0.00028; logFC: 1.146, p = 0.00115, respectively). MMD-only subgroup analysis stratified by location showed that NMUR1 is significantly overexpressed in the MCA compared to the STA (logFC: 1.962; p = 0.00053) which further suggests its possible localized involvement in the progressive stenosis seen in the cerebral arteries in MMD.
Conclusion: This is the first study to have performed WGCNA on samples directly affected by MMD. NMUR1 expression is well known to induce localized arterial smooth muscle constriction and recently, type 2 inflammation which can predispose to arterial stenosis potentially advancing the symptoms and progression of MMD. Further validation and functional studies are necessary to understand the precise role of NMUR1 upregulation in MMD and its potential implications.
DOI: 10.6084/m9.figshare.25283104.v1
title: Supplementary Material for: Cerebral artery overexpression of the NMUR1 gene is associated with moyamoya disease: a weighted gene co-expression network analysis

description: Introduction: This study aimed to elucidate mechanisms underlying moyamoya disease (MMD) pathogenesis and to identify potential novel biomarkers. We utilized gene coexpression networks to identify hub genes associated with the disease. 
Methods: Twenty-one middle cerebral artery (MCA) samples from MMD patients and 11 MCA control samples were obtained from the Gene Expression Omnibus (GEO) dataset, GSE189993. To discover functional pathways and potential biomarkers, weighted gene coexpression network analysis (WGCNA) was employed. The hub genes identified were re-assessed through differential gene expression analysis (DGEA) via DESeq2 for further reliability verification. An additional 4 samples from the superficial temporal arteries (STA) from MMD patients were obtained from GSE141025 and a subgroup analysis stratified by arterial type (MCA vs. STA) DGEA was performed to assess if the hub genes associated with MMD are expressed significantly greater on the affected arteries compared to healthy ones in MMD.
Results: WGCNA revealed a predominant module encompassing 139 hub genes, predominantly associated with the neuroactive ligand-receptor interaction (NLRI) pathway. Of those, 17 genes were validated as significantly differentially expressed. Neuromedin U receptor 1 (NMUR1) and thyrotropin-releasing hormone (TRH) were 2 out of the 17 hub genes involved in the NLRI pathway (log fold change [logFC]: 1.150, p = 0.00028; logFC: 1.146, p = 0.00115, respectively). MMD-only subgroup analysis stratified by location showed that NMUR1 is significantly overexpressed in the MCA compared to the STA (logFC: 1.962; p = 0.00053) which further suggests its possible localized involvement in the progressive stenosis seen in the cerebral arteries in MMD.
Conclusion: This is the first study to have performed WGCNA on samples directly affected by MMD. NMUR1 expression is well known to induce localized arterial smooth muscle constriction and recently, type 2 inflammation which can predispose to arterial stenosis potentially advancing the symptoms and progression of MMD. Further validation and functional studies are necessary to understand the precise role of NMUR1 upregulation in MMD and its potential implications.
DOI: 10.5281/zenodo.10699883
title: Heterogeneous Structural Variation Simulation Results
DOI: 10.5281/zenodo.10699884
title: Heterogeneous Structural Variation Simulation Results
DOI: 10.6084/m9.figshare.24071118
title: The performance of convolutional neural networks in the detection of nasal septal deviation in computerized cone beam tomography images.

description: dataset
DOI: 10.6084/m9.figshare.25283131
title: <b>Impact of Class II and Class III Skeletal Malocclusion on Pharyngeal Airway Dimensions: A Systematic Literature Review and Meta-Analysis.</b>

description: data set
DOI: 10.21227/gwgx-1z32
title: Comprehensive Quranic Dataset Version 1 (CQDV1)

description: The dataset collected for the whole Quran; 114 sura (6236 ayah) recited by 35 Reciters (approximately 218000 audio files), downloaded from this website https://www.a-quran.com/showthread.php?t=11017, the audio files downloaded in mp3 format, all the downloaded files based on the Hafs from A’asim narration, the dataset figure shows reciters names who participate in this dataset.
DOI: 10.6084/m9.figshare.25283137
title: Supplementary Material for: Independent Association Between Cognitive Frailty and Cardio-Ankle Vascular Index in Community-Dwelling Older Adults

description: Introduction 
Although arterial stiffness has been suggested to be associated with poor physical function and mild cognitive impairment (MCI), its association with cognitive frailty (CF), a comorbidity of both, is unclear. This study aims to examine the association between CF and arterial stiffness in community-dwelling older adults.

Methods
A cross-sectional analysis of 511 community-dwelling older adults aged 65 years or older (mean age 73.6 ± 6.2 years, 63.6% women), who participated in a community cohort study (Tarumizu Study, 2019), was conducted. Poor physical function was defined as either slowness (walking speed &lt; 1.0 m/sec), or weakness (grip strength &lt; 28 kg for men and &lt; 18 kg for women). MCI was defined by the National Center for Geriatrics and Gerontology Functional Assessment Tool as a decline of at least 1.5 standard deviation from age- and education-adjusted baseline values in any one of the four cognitive domains (memory, attention, executive, and information processing). CF was defined as the combination of poor physical function and MCI. Arterial stiffness was measured using the Cardio-Ankle Vascular Index (CAVI), and the average of the left and right sides (mean CAVI) was used.

Results
Multinomial logistic regression analysis adjusted for covariates was performed with the four groups of robust, poor physical function, MCI, and CF as dependent variables and mean CAVI as an independent variable. Using the robust group as reference, the poor physical function and MCI groups showed no significant relationship with the mean CAVI. The mean CAVI was significantly higher in the CF group (odds ratio 1.62, 95% confidence interval 1.14–2.29).

Conclusion 
A significant association was found between CF and the higher CAVI (progression of arterial stiffness). Careful observation and control of CAVI, which is also an indicator of arterial stiffness, may be a potential target for preventive interventions for CF.
DOI: 10.5281/zenodo.10688768
title: Data for the paper "Emergence of complex oscillatory dynamics in the neuronal networks with long activity time of inhibitory synapses"

description: The data generated by the C++ codes (DOI: 10.5281/zenodo.10688712) are associated with the article "Emergence of Complex Oscillatory Dynamics in the Neuronal Networks with Long Activity Time of Inhibitory Synapses". When running the Python codes, make sure to utilize each pertinent dataset.
DOI: 10.5281/zenodo.10688769
title: Data for the paper "Emergence of complex oscillatory dynamics in the neuronal networks with long activity time of inhibitory synapses"

description: The data generated by the C++ codes (DOI: 10.5281/zenodo.10688712) are associated with the article "Emergence of Complex Oscillatory Dynamics in the Neuronal Networks with Long Activity Time of Inhibitory Synapses". When running the Python codes, make sure to utilize each pertinent dataset.
DOI: 10.6084/m9.figshare.25283083
title: Global Natural and Planted Forests Mapping at Fine Spatial Resolution of 30 m

description: The expansion of planted forests often encroaches upon natural forests, leading to numerous environmental and social problems. Mapping natural and planted forests is crucial for the monitoring, management, and conservation of these invaluable forest resources. However, global mapping of natural and planted forests at fine spatial resolution remains an unaddressed need. Here, we generated more than 70 million training samples from dense Landsat images and fed them to a random forest classifier (RF). Our dataset achieved an impressive overall accuracy of 85% when validated against reference data.
DOI: 10.5281/zenodo.10690736
title: VioDroid-Finder: Automated Evaluation of Compliance and Consistency for Android Apps

description: The app dataset of Viodroid-Finder. For more information, visit our GitHub.

 (all apps are crawled from Huawei AppGallery.)

 

It includes two part:

    1. 600 target apps mentioned in the paper. (including the app metadata, privacy policies and APK files. We split APKs into multiple smaller files named "apks (600 target apps).zip{00-32}", merge them using "cat" command in Linux)

    2. "All apps.zip": All apps we have collected, 40000+ in total. (including the app metadata, and privacy policies. Their APK files/privacy policy screenshots could be shared by contacting us)

 

The file name consists of the app_id and app_version -> i.e.,

    the APK file: {app_id}-{app_version}.apk

    the privacy policy file: {app_id}-{app_version}.txt

    the app metadata file: {app_id}-{app_version}.json

Note that, as we crawled the data at multiple different times, an app may have multiple versions. The app home page url is like "https://appgallery.huawei.com/app/{app_id}", this link may be unavailable as Huawei AppGallery/developers may remove apps)
DOI: 10.5281/zenodo.10690737
title: VioDroid-Finder: Automated Evaluation of Compliance and Consistency for Android Apps

description: The app dataset of Viodroid-Finder. For more information, visit our GitHub.

 (all apps are crawled from Huawei AppGallery.)

 

It includes two part:

    1. 600 target apps mentioned in the paper. (including the app metadata, privacy policies and APK files. We split APKs into multiple smaller files named "apks (600 target apps).zip{00-32}", merge them using "cat" command in Linux)

    2. "All apps.zip": All apps we have collected, 40000+ in total. (including the app metadata, and privacy policies. Their APK files/privacy policy screenshots could be shared by contacting us)

 

The file name consists of the app_id and app_version -> i.e.,

    the APK file: {app_id}-{app_version}.apk

    the privacy policy file: {app_id}-{app_version}.txt

    the app metadata file: {app_id}-{app_version}.json

Note that, as we crawled the data at multiple different times, an app may have multiple versions. The app home page url is like "https://appgallery.huawei.com/app/{app_id}", this link may be unavailable as Huawei AppGallery/developers may remove apps)
DOI: 10.5281/zenodo.10685641
title: Linux-APT-Dataset-2024

description: A novel dataset 'Linux-APT-Dataset-2024' that includes the Tactics, Techniques and Procedure (TTPs) of Advanced Persistent Threat (APT) attacks in Linux environment. There are 17 files ranging from 01st October 2023 to 07 January 2024 and each of the file contains all the essential data fields that could be required for any analysis. Timestamp, Agent-Name, Full-log (Including commands, payloads, and arguments), Rule Description, MITRE Tactic and Associated IDs, MITRE Technique, File Hash (MD5), File Hash (SHA256), Source-OS, Path, Source Datatype, Filename, Source-log, Rule PCI-DSS, Rule HIPAA, Rule NIST800-53, Source/Destination IP & Port. The dataset contains both type of activities general as well as malicious/suspicious to make the dataset near real-time for better analysis and evaluation. It will be more productive if the cybersecurity framework considered for mapping the TTP is MITRE. The simulated attacks includes all the Privilege Escalation payloads for linux, recently discovered CVEs, emulations of key-loggers and APTs like APT41, APT28, APT29, Turla. An effective way to make the log/records whether it is general or suspicious is to filter the log if it is TTP tagged, that means it's suspicious/malicious otherwise it is considered as general. While developing the dataset we have The dataset is also useful for analysing all the critical log resources in the linux environment that could be considered while performing forensics activity. The combined version for all the files are placed in the below reference.Karim, Sohaib (2024), “Linux-APT-Dataset-2024”, Mendeley Data, V1, doi: 10.17632/5x68fv63sh.1 (Combine-CSV)
DOI: 10.5281/zenodo.10685642
title: Linux-APT-Dataset-2024

description: A novel dataset 'Linux-APT-Dataset-2024' that includes the Tactics, Techniques and Procedure (TTPs) of Advanced Persistent Threat (APT) attacks in Linux environment. There are 17 files ranging from 01st October 2023 to 07 January 2024 and each of the file contains all the essential data fields that could be required for any analysis. Timestamp, Agent-Name, Full-log (Including commands, payloads, and arguments), Rule Description, MITRE Tactic and Associated IDs, MITRE Technique, File Hash (MD5), File Hash (SHA256), Source-OS, Path, Source Datatype, Filename, Source-log, Rule PCI-DSS, Rule HIPAA, Rule NIST800-53, Source/Destination IP & Port. The dataset contains both type of activities general as well as malicious/suspicious to make the dataset near real-time for better analysis and evaluation. It will be more productive if the cybersecurity framework considered for mapping the TTP is MITRE. The simulated attacks includes all the Privilege Escalation payloads for linux, recently discovered CVEs, emulations of key-loggers and APTs like APT41, APT28, APT29, Turla. An effective way to make the log/records whether it is general or suspicious is to filter the log if it is TTP tagged, that means it's suspicious/malicious otherwise it is considered as general. While developing the dataset we have The dataset is also useful for analysing all the critical log resources in the linux environment that could be considered while performing forensics activity. The combined version for all the files are placed in the below reference.Karim, Sohaib (2024), “Linux-APT-Dataset-2024”, Mendeley Data, V1, doi: 10.17632/5x68fv63sh.1 (Combine-CSV)
DOI: 10.34740/kaggle/dsv/7689506
title: EMAHA-DB3
DOI: 10.5281/zenodo.10670291
title: A large-sample modelling approach towards integrating streamflow and evaporation data for the Spanish catchments

description: Data description



catchments_info.csv: list of the 189 study catchments and some important attributes such as topographic area (km²), location of the outlet and type of station (reservoir or gauging station). In particular, the column "code_cedex" refers to the original catchment identifiers in the SAIH-ROEA dataset (https://www.miteco.gob.es/en/cartografia-y-sig/ide/descargas/agua/anuario-de-aforos.html).

qsim_esim_vic_qonly_calibration.nc: netcdf with the VIC daily simulations of streamflow (m³/s) and evaporation (mm/d) for the study catchments corresponding to the Q-only calibration experiment.

qsim_esim_vic_qe_calibration.nc: netcdf with the VIC daily simulations of streamflow (m³/s) and evaporation (mm/d) for the study catchments corresponding the Q-E calibration experiment.
DOI: 10.6084/m9.figshare.24026634
title: A sustainable bioprocess for the production of benzyl acetate

description: Raw data for the figures presented in a study titled "A sustainable bioprocess for the production of benzyl acetate"
DOI: 10.6084/m9.figshare.24026634.v1
title: A sustainable bioprocess for the production of benzyl acetate

description: Raw data for the figures presented in a study titled "A sustainable bioprocess for the production of benzyl acetate"
DOI: 10.6084/m9.figshare.24954819.v1
title: Thylakoid membrane stacking controls electron transport mode during the dark-to-light transition by adjusting the distances between PSI and PSII

description: Ultrastructural and supramolecular rearrangements that occur during the dark-to-light transition in plants.
DOI: 10.6084/m9.figshare.24954819
title: Thylakoid membrane stacking controls electron transport mode during the dark-to-light transition by adjusting the distances between PSI and PSII

description: Ultrastructural and supramolecular rearrangements that occur during the dark-to-light transition in plants.
DOI: 10.6084/m9.figshare.24018879
title: Targeted delivery of Fc-fused PD-L1 for effective management of acute and chronic colitis

description: Source data
DOI: 10.6084/m9.figshare.24018879.v1
title: Targeted delivery of Fc-fused PD-L1 for effective management of acute and chronic colitis

description: Source data
DOI: 10.6084/m9.figshare.24312166
title: Multiscale Simulation of polytetrafluoroethylene gasification using thermal plasma: Mechanism investigation with experimental validation

description: This repository contains the source data that support the findings of "Multiscale Simulation of polytetrafluoroethylene gasification using thermal plasma: mechanism investigation with experimental validation".
DOI: 10.6084/m9.figshare.25047239
title: Evolution and expression patterns of the neo-sex chromosomes of the crested ibis

description: This dataset can be used to compare TE, GC, and gene content in different chromosomes of Crested Ibis.
DOI: 10.6084/m9.figshare.25047239.v1
title: Evolution and expression patterns of the neo-sex chromosomes of the crested ibis

description: This dataset can be used to compare TE, GC, and gene content in different chromosomes of Crested Ibis.
DOI: 10.6084/m9.figshare.22589950
title: Autonomous error correction of a single logical qubit using two transmons

description: This file includes both the simulation code, experiment data analysis and code for generating figures.

The SIPF.zip file contains the analytic simulation code of the home-made filter performance used in the experiment

The circuit quantization.zip file contains the jupyter notebook code used to do circuit quantization of our device.

The sideband mixing.zip file contains all raw experiment data showing both individual two-qutrit sidebands and mixed sidebands necessary for the whole AQEC experiments.

The AQEC simulation.zip file contains the Qutip simulation code used to do Master equation simulation of our system

The AQEC performance.zip file contains both the density matrix reconstructed in the experiments and the fitting

The Error Rate For Tomography.ipynb and the Collected Error Rate Results are jupyter notebook file used for analyzing the error bar of MLE tomography.