cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0192048.10fu
title: SH0192048.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.25824/redu/itmdtv
title: Caracterização e avaliação de propriedades do isolado proteico do soro de leite termoplástico e suas blendas com gelatina e estearato de cálcio

description: Os dados referem-se ao projeto de iniciação científica "Avaliação da incorporação do estearato de cálcio nas propriedades reológicas do isolado proteico do soro e leite termoplástico" e à Bolsa Estágio de Pesquisa no Exterior (BEPE) "Estudo de filmes de blendas de gelatina/isolado proteico do soro de leite termoplástico modificado com estearato de cálcio."
DOI: 10.15156/bio/sh0192049.10fu
title: SH0192049.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.26735319.v1
title: Additional file 3 of Beyond benchmarking and towards predictive models of dataset-specific single-cell RNA-seq pipeline performance

description: Additional file 3. A copy of the sample-level metadata for the 86 datasets used in this study.
DOI: 10.6084/m9.figshare.26735319
title: Additional file 3 of Beyond benchmarking and towards predictive models of dataset-specific single-cell RNA-seq pipeline performance

description: Additional file 3. A copy of the sample-level metadata for the 86 datasets used in this study.
DOI: 10.6084/m9.figshare.26735325
title: Additional file 1 of Cefiderocol susceptibility of Achromobacter spp.: study of an accurately identified collection of 230 strains

description: Supplementary Material 1. Additional Table. Achromobacter spp. isolates of this study and results of antimicrobial susceptibility testing.
DOI: 10.6084/m9.figshare.26735325.v1
title: Additional file 1 of Cefiderocol susceptibility of Achromobacter spp.: study of an accurately identified collection of 230 strains

description: Supplementary Material 1. Additional Table. Achromobacter spp. isolates of this study and results of antimicrobial susceptibility testing.
DOI: 10.6084/m9.figshare.26627167.v1
title: Additional file 3 of Bidirectional Mendelian randomization analysis of the genetic association between primary lung cancer and colorectal cancer

description: Additional file 3: Table S2. Effect estimates for associations of genetic instruments with exposure.
DOI: 10.15468/dl.zdesrs
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron declivatum Ching & H.P.Yang"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068507-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.226max
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((147.217407 -33.209162, 147.224144 -33.209162, 147.224144 -33.202424, 147.230882 -33.202424, 147.230882 -33.197933, 147.224144 -33.197933, 147.224144 -33.193441, 147.219653 -33.193441, 147.219653 -33.195687, 147.215161 -33.195687, 147.215161 -33.197933, 147.217407 -33.197933, 147.217407 -33.202424, 147.215161 -33.202424, 147.215161 -33.20467, 147.217407 -33.20467, 147.217407 -33.209162)), ((147.217407 -33.209162, 147.215161 -33.209162, 147.215161 -33.211408, 147.21067 -33.211408, 147.21067 -33.213653, 147.217407 -33.213653, 147.217407 -33.209162)))"
 ]
}

 The dataset includes 43 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068508-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qr794q
title: Occurrence Download

description: A dataset containing 493 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Honduras",
 "TaxonKey is Vespertilionidae"
 ]
}

 The dataset includes 493 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068509-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26735388
title: Additional file 2 of adhesiomeR: a tool for Escherichia coli adhesin classification and analysis

description: Additional file 2: Table A1. List of reference hits used to set gene-specific bit score thresholds.
DOI: 10.6084/m9.figshare.26735388.v1
title: Additional file 2 of adhesiomeR: a tool for Escherichia coli adhesin classification and analysis

description: Additional file 2: Table A1. List of reference hits used to set gene-specific bit score thresholds.
DOI: 10.6084/m9.figshare.26735391.v1
title: Additional file 3 of adhesiomeR: a tool for Escherichia coli adhesin classification and analysis

description: Additional file 3: Table A2. Adhesin gene-specific bit score thresholds. These thresholds are used to determine gene presence absence in the strict version of the search.
DOI: 10.6084/m9.figshare.26735391
title: Additional file 3 of adhesiomeR: a tool for Escherichia coli adhesin classification and analysis

description: Additional file 3: Table A2. Adhesin gene-specific bit score thresholds. These thresholds are used to determine gene presence absence in the strict version of the search.
DOI: 10.6084/m9.figshare.26735394
title: Additional file 4 of adhesiomeR: a tool for Escherichia coli adhesin classification and analysis

description: Additional file 4: Table A3. Adhesin profiles based on all adhesin genes. The first column indicates the profile number, whereas the remaining columns list genes determining the profiles and their presence (1) or absence (0) in each profile.
DOI: 10.6084/m9.figshare.26735394.v1
title: Additional file 4 of adhesiomeR: a tool for Escherichia coli adhesin classification and analysis

description: Additional file 4: Table A3. Adhesin profiles based on all adhesin genes. The first column indicates the profile number, whereas the remaining columns list genes determining the profiles and their presence (1) or absence (0) in each profile.
DOI: 10.6084/m9.figshare.26735397
title: Additional file 5 of adhesiomeR: a tool for Escherichia coli adhesin classification and analysis

description: Additional file 5: Table A4. Adhesin profiles based on fimbrial adhesin genes. The first column indicates the profile number, whereas the remaining columns list genes determining the profiles and their presence (1) or absence (0) in each profile.
DOI: 10.6084/m9.figshare.26735397.v1
title: Additional file 5 of adhesiomeR: a tool for Escherichia coli adhesin classification and analysis

description: Additional file 5: Table A4. Adhesin profiles based on fimbrial adhesin genes. The first column indicates the profile number, whereas the remaining columns list genes determining the profiles and their presence (1) or absence (0) in each profile.
DOI: 10.6084/m9.figshare.26735400
title: Additional file 6 of adhesiomeR: a tool for Escherichia coli adhesin classification and analysis

description: Additional file 6: Table A5. Adhesin profiles based on nonfimbrial adhesin genes. The first column indicates the profile number, whereas the remaining columns list genes determining the profiles and their presence (1) or absence (0) in each profile.
DOI: 10.6084/m9.figshare.26735400.v1
title: Additional file 6 of adhesiomeR: a tool for Escherichia coli adhesin classification and analysis

description: Additional file 6: Table A5. Adhesin profiles based on nonfimbrial adhesin genes. The first column indicates the profile number, whereas the remaining columns list genes determining the profiles and their presence (1) or absence (0) in each profile.
DOI: 10.6084/m9.figshare.26735403
title: Additional file 7 of adhesiomeR: a tool for Escherichia coli adhesin classification and analysis

description: Additional file 7: Table A6. List of in silico pathotyped genomes.
DOI: 10.6084/m9.figshare.26735415
title: Additional file 1 of Cognition of diet quality and dietary management in elderly patients with coronary and other atherosclerotic vascular disease in western China, a qualitative research study

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.26735415.v1
title: Additional file 1 of Cognition of diet quality and dietary management in elderly patients with coronary and other atherosclerotic vascular disease in western China, a qualitative research study

description: Supplementary Material 1.
DOI: 10.5281/zenodo.13300758
title: Mapping between Modeling Concepts and Modeling Techniques for Digital Ecosystems
DOI: 10.15468/dl.uywqt4
title: Occurrence Download

description: A dataset containing 493 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Honduras",
 "TaxonKey is Vespertilionidae"
 ]
}

 The dataset includes 493 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068510-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9zk8k8
title: Occurrence Download

description: A dataset containing 493 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Honduras",
 "TaxonKey is Vespertilionidae"
 ]
}

 The dataset includes 493 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068511-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26580845.v1
title: Additional file 1 of Genomic adaptation to extreme climate conditions in beef cattle as a consequence of cross-breeding program

description: Additional file 1
DOI: 10.6084/m9.figshare.26580845
title: Additional file 1 of Genomic adaptation to extreme climate conditions in beef cattle as a consequence of cross-breeding program

description: Additional file 1
DOI: 10.6084/m9.figshare.26627194.v1
title: Additional file 5 of Metabolic shift toward ketosis in asocial cavefish increases social-like affinity

description: Additional file 5. GO term re-analysis of the 72-hour post-fertilization transcriptome. For the RNAseq transcriptome analysis, variation in gene expression was analyzed using previously published RNAseq data (GenBank Sequence Read Archive (SRA), accession code: PRJNA258661) [26, 80, 105]. The data were analyzed by following previously published protocols [31, 106]. Gene ontology terms (GO terms) were analyzed using the AmiGO 2 platform [107].
DOI: 10.6084/m9.figshare.26627200.v1
title: Additional file 7 of Metabolic shift toward ketosis in asocial cavefish increases social-like affinity

description: Additional file 7. Supporting data values.
DOI: 10.15468/dl.qsv7eb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.661456 -33.211408, 148.661456 -33.213653, 148.665947 -33.213653, 148.665947 -33.211408, 148.661456 -33.211408))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068512-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26627188
title: Additional file 3 of Metabolic shift toward ketosis in asocial cavefish increases social-like affinity

description: Additional file 3. Statistical scores for Figures 1-7; Additional files 2: Fig. S1-S13.
DOI: 10.6084/m9.figshare.26627188.v1
title: Additional file 3 of Metabolic shift toward ketosis in asocial cavefish increases social-like affinity

description: Additional file 3. Statistical scores for Figures 1-7; Additional files 2: Fig. S1-S13.
DOI: 10.6084/m9.figshare.26627194
title: Additional file 5 of Metabolic shift toward ketosis in asocial cavefish increases social-like affinity

description: Additional file 5. GO term re-analysis of the 72-hour post-fertilization transcriptome. For the RNAseq transcriptome analysis, variation in gene expression was analyzed using previously published RNAseq data (GenBank Sequence Read Archive (SRA), accession code: PRJNA258661) [26, 80, 105]. The data were analyzed by following previously published protocols [31, 106]. Gene ontology terms (GO terms) were analyzed using the AmiGO 2 platform [107].
DOI: 10.5281/zenodo.4051223
title: Data for "On the atomic structure of the β′′ precipitate by density functional theory"

description: The dataset contains the DFT results which is the basis for the results and discussions in the related article, "On the atomic structure of the β′′ precipitate by density functional theory". The details of the DFT calculations are written in the article.

The names of the OUTCAR files in enthalpy_study_OUTCARS.tar.gz are more or less self-explanatory, at least within the context of the journal article. The KPOINT tests have the following format for the KPOINTS "XYZ" where X is always a single digit, Y is first to get a double-digit, while Z gets a double-digit second. The max distance in reciprocal space is thus not a constant as the OUTCAR files would suggest.

 

The LET_DATA is the linear-elastic theory displacement-field as explained in the article for different aspect ratios of the precipitate eye structure.
DOI: 10.5281/zenodo.4051224
title: Data for "On the atomic structure of the β′′ precipitate by density functional theory"

description: The dataset contains the DFT results which is the basis for the results and discussions in the related article, "On the atomic structure of the β′′ precipitate by density functional theory". The details of the DFT calculations are written in the article.

The names of the OUTCAR files in enthalpy_study_OUTCARS.tar.gz are more or less self-explanatory, at least within the context of the journal article. The KPOINT tests have the following format for the KPOINTS "XYZ" where X is always a single digit, Y is first to get a double-digit, while Z gets a double-digit second. The max distance in reciprocal space is thus not a constant as the OUTCAR files would suggest.

 

The LET_DATA is the linear-elastic theory displacement-field as explained in the article for different aspect ratios of the precipitate eye structure.
DOI: 10.6084/m9.figshare.26627167
title: Additional file 3 of Bidirectional Mendelian randomization analysis of the genetic association between primary lung cancer and colorectal cancer

description: Additional file 3: Table S2. Effect estimates for associations of genetic instruments with exposure.
DOI: 10.15468/dl.tqtzan
title: Occurrence Download

description: A dataset containing 10594 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Human Observation)",
 "OccurrenceStatus is Present",
 "TaxonKey is Solanum tuberosum L.",
 "Year 2000-2024"
 ]
}

 The dataset includes 10594 records from 215 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068514-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26580878
title: Additional file 2 of Molecular subtypes predict therapeutic responses and identifying and validating diagnostic signatures based on machine learning in chronic myeloid leukemia

description: Additional file 2. Table S1. Model genes and “Coef” value.
DOI: 10.6084/m9.figshare.26580878.v1
title: Additional file 2 of Molecular subtypes predict therapeutic responses and identifying and validating diagnostic signatures based on machine learning in chronic myeloid leukemia

description: Additional file 2. Table S1. Model genes and “Coef” value.
DOI: 10.6084/m9.figshare.26580893
title: Additional file 2 of FIPRESCI: droplet microfluidics based combinatorial indexing for massive-scale 5′-end single-cell RNA sequencing

description: Additional file 2: Tables S1. Oligonucleotide sequences for Fipresci-Seq.
DOI: 10.6084/m9.figshare.26580896
title: Additional file 3 of FIPRESCI: droplet microfluidics based combinatorial indexing for massive-scale 5′-end single-cell RNA sequencing

description: Additional file 3: Tables S2. Statistics of Fipresci-Seq Round1 index oligonucleotide sequences used for all experiments in this study.
DOI: 10.6084/m9.figshare.26580896.v1
title: Additional file 3 of FIPRESCI: droplet microfluidics based combinatorial indexing for massive-scale 5′-end single-cell RNA sequencing

description: Additional file 3: Tables S2. Statistics of Fipresci-Seq Round1 index oligonucleotide sequences used for all experiments in this study.
DOI: 10.6084/m9.figshare.26580893.v1
title: Additional file 2 of FIPRESCI: droplet microfluidics based combinatorial indexing for massive-scale 5′-end single-cell RNA sequencing

description: Additional file 2: Tables S1. Oligonucleotide sequences for Fipresci-Seq.
DOI: 10.15468/dl.rh7e4y
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.439122 -33.209162, 148.439122 -33.213653, 148.430138 -33.213653, 148.430138 -33.220391, 148.43463 -33.220391, 148.43463 -33.218145, 148.450351 -33.218145, 148.450351 -33.213653, 148.443613 -33.213653, 148.443613 -33.209162, 148.439122 -33.209162)), ((148.450351 -33.213653, 148.452596 -33.213653, 148.452596 -33.218145, 148.459334 -33.218145, 148.459334 -33.213653, 148.457088 -33.213653, 148.457088 -33.211408, 148.450351 -33.211408, 148.450351 -33.213653)))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068515-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jvqphu
title: Occurrence Download

description: A dataset containing 5045 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cambarunio Watters, 2018"
 ]
}

 The dataset includes 5045 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068516-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26735613
title: Additional file 7 of Reprogramming of 3D genome structure underlying HSPC development in zebrafish

description: Supplementary Material 1:
DOI: 10.6084/m9.figshare.26735613.v1
title: Additional file 7 of Reprogramming of 3D genome structure underlying HSPC development in zebrafish

description: Supplementary Material 1:
DOI: 10.6084/m9.figshare.26627200
title: Additional file 7 of Metabolic shift toward ketosis in asocial cavefish increases social-like affinity

description: Additional file 7. Supporting data values.
DOI: 10.15468/dl.az9kbh
title: Occurrence Download

description: A dataset containing 308 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Polylepis racemosa Ruiz & Pav."
 ]
}

 The dataset includes 308 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068519-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k79h5g
title: Occurrence Download

description: A dataset containing 493 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Honduras",
 "TaxonKey is Vespertilionidae"
 ]
}

 The dataset includes 493 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068518-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26735461
title: segment shifting tasks materials

description: 2 segment shifting tasks with nouns and verbs as sources
DOI: 10.6084/m9.figshare.26735461.v1
title: segment shifting tasks materials

description: 2 segment shifting tasks with nouns and verbs as sources
DOI: 10.25345/c5mk65m1v
title: MassIVE MSV000095615 - Tyrosine kinase Ptk1 couples one carbon metabolism and virulence in an endogenous pathogen
title: Samples were analyzed by GelC MS using in-gel trypsinization. Digests were analyzed using an EASY nLC (ThermoFisher) UHPLC system and an Acclaim PepMap 100 trap coupled to an Acclaim PepMap RSLC 50 um separating column (ThermoFisher). The eluate was introduced into the LTQ-Orbitrap ELITE mass spectrometer using a Nanospray Flex source (ThermoElectron). A Nth Order Double Play method was created in Xcalibur v2.2. Scan event one of the method obtained an FTMS MS1 scan (normal mass range; 120,000 resolution, full scan type, positive polarity, profile data type) for the range 300 to 2000 m/z. Scan event two obtained ITMS MS2 scans (CID activation type, normal mass range, rapid scan rate, centroid data type) on up to twenty peaks that had a minimum signal threshold of 5000 counts from scan event one. The lock mass option was enabled using the 371.101236m/z polysiloxane peak as an internal calibrant. Peaks Studio Xpro (Bioinformatics Solutions) was used to analyze the data against the 9/30/2021 version of the P. gingivalis strain ATCC 33277 protein sequences from the UniProtKB (proteome identifier UP000008842) considering semi specific Trypsin (maximum two missed cleavages) with fragment tolerance (0.5 Da) from the ITMS and parent tolerance (15 ppm) from the FTMS. FDR estimation was enabled in the algorithms. A proteins.csv file was exported for curation in Microsoft Excel. Proteins and peptides were accepted at the 1% FDR threshold.