DOI: 10.5061/dryad.ff2p0
title: Data from: Tightly congruent bursts of lineage and phenotypic diversification identified in a continental ant radiation

description: Adaptive diversification is thought to be shaped by ecological
 opportunity. A prediction of this ecological process of diversification is
 that it should result in congruent bursts of lineage and phenotypic
 diversification, but few studies have found this expected association.
 Here, we study the relationship between rates of lineage diversification
 and body size evolution in the turtle ants, a diverse Neotropical clade.
 Using a near complete, time-calibrated phylogeny we investigated lineage
 diversification dynamics and body size disparity through model fitting
 analyses and estimation of per-lineage rates of cladogenesis and
 phenotypic evolution. We identify an exceptionally high degree of
 congruence between the high rates of lineage and body size diversification
 in a young clade undergoing renewed diversification in the ecologically
 distinct Chacoan biogeographical region of South America. It is likely
 that the region presented turtle ants with novel ecological opportunity,
 which facilitated a nested burst of diversification and phenotypic
 evolution within the group. Our results provide a compelling quantitative
 example of tight congruence between rates of lineage and phenotypic
 diversification, meeting the key predicted pattern of adaptive
 diversification shaped by ecological opportunity.
description: Body length data (log
 transformed) in CephalotesMaximum reported body
 length measurements from the worker caste of Cephalotes species. Data are
 log transformed. Data are from multiple museum collections, most of which
 are in de Andrade and Baroni-Urbani (1999). Data for C. specularis are
 from Brandão et al. (2014), measurements for C_sp3 came from data from a
 reproductively mature colony (S. Powell, in press), and data for C_sp2
 came from one individual (S. Powell, unpublished data).Ceph_bodylength.txtMolecular and morphological data matrix with MrBayes blockNexus file that includes the sequence alignment of 5 genes (from Price et al. 2014) and a morphological dataset (from de Andrade and Baroni-Urbani 1999). About 50% of species have molecular data, and morphological data are included for all known Cephalotes species, including extinct species. A MrBayes blocks is included for the analyses for Figure S1 (extinct and extant species phylogram) and Figure S2 (extant species phylogram).Ceph_phylogram.nexNexus file for divergence time estimation (node-calibrated and tip-dated)Nexus file used for divergence time estimation analyses. It includes molecular data from Price et al. (2014) and morphological data from de Andrade and Baroni-Urbani (1999). MrBayes blocks are included for total evidence tip-dating (Figure S3)and node-calibration (Figure S4) analyses.Ceph_time_calibration.nexBAMM control file for lineage diversificationThis is the input file (called the control file) for lineage diversification analysis in BAMM. The file was directly adapted from the documentation on the BAMM website (http://bamm-project.org/).lineage_controlfile.txtBAMM control file for trait evolutionThis is the input file (called the control file) for analysis of trait evolution in BAMM. The file was directly adapted from the documentation on the BAMM website (http://bamm-project.org/).trait_controlfile.txtBAMMtools R script for lineage diversificationScript used in the R program BAMMtools for the analysis and visualization of lineage diversification results in BAMM. The script was adapted from documentation on the BAMM website (http://bamm-project.org/).BAMMtools_lineage_script.RBAMMtools R script for trait evolutionScript used in the R program BAMMtools for the analysis and visualization of trait evolution, specifically body size evolution, results in BAMM. The script was adapted from documentation on the BAMM website (http://bamm-project.org/).BAMMtools_trait_script.RR script for gamma and MCCR analysesScript for conducting gamma/MCCR analyses in Laser in R.gamma_MCCR.RR script for DDD analysesR script for performing DDD analyses on the phylogeny. It does the likelihood optimization from two different sets of starting values of the parameters, for the most parameter-rich models.MLkeyinnCephalotes.RR script for DDD settingsThe R script loads the turtle ant data and calls the function MLkeyinnCephalotes to perform the DDD analyses. It provides all the settings which are then passed to this function.MLkeyinnCephalotes2.RNode-calibrated MCC treeNode-calibrated maximum clade credibility (MCC) tree for Cephalotes.Cephalotes_node_calibration.treTip-dated MCC treeTip-dated maximum clade credibility (MCC) tree for Cephalotes.Cephalotes_tip_dating.tre