cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14850519
title: NetCDF file: Reconstruction of TCA-based Time-variant Errors using LGBM and DNN Models

description: [Paper title] A Stand-Alone Framework for Predicting Spatiotemporal Errors in Satellite-Based Soil Moisture Using Tree-Based Models and Deep Neural Networks





Uncertainty Estimation via Triple Collocation Analysis:The dataset includes uncertainties derived from triple collocation analysis (TCA) of SMAP soil moisture (SM) measurements.




Machine Learning and Deep Learning Reconstructions:Masked uncertainty information due to four masking flags are reconstructed using ML/DL models:



Light Gradient Boosting Machine (LGBM)

Deep Neural Networks (DNN)





Variables:



latitude / longitude



Equal-Area Scalable Earth version 2.0 (EASE-2) Grid system (36 km)



flags_corr



[Flag1] correlation flag



flags_n_valid



[Flag2] valid number flag



flags_fMSE



[Flag3] fMSE flag



flags_negative_vars_err 



[Flag4] negative error variance flag 



SMAP_SM



SMAP soil moisture



SMAP_TCA_err



SMAP soil moisture TCA error (before reconstruction)



SMAP_TCA_err_recons_LGBM



SMAP soil moisture TCA error (after reconstruction by LGBM)



SMAP_TCA_err_recons_DNN



SMAP soil moisture TCA error (after reconstruction by DNN)






Note: The current dataset includes only the 2022 data, although the full data period spans from 2015 to 2023. Please be aware that if the data is updated, the Zenodo link will change. In that case, please visit https://www.hydroai.net or contact the data manager directly (subinkim8774@gm.gist.ac.kr) to download the dataset.
DOI: 10.5281/zenodo.14850520
title: NetCDF file: Reconstruction of TCA-based Time-variant Errors using LGBM and DNN Models

description: [Paper title] A Stand-Alone Framework for Predicting Spatiotemporal Errors in Satellite-Based Soil Moisture Using Tree-Based Models and Deep Neural Networks





Uncertainty Estimation via Triple Collocation Analysis:The dataset includes uncertainties derived from triple collocation analysis (TCA) of SMAP soil moisture (SM) measurements.




Machine Learning and Deep Learning Reconstructions:Masked uncertainty information due to four masking flags are reconstructed using ML/DL models:



Light Gradient Boosting Machine (LGBM)

Deep Neural Networks (DNN)





Variables:



latitude / longitude



Equal-Area Scalable Earth version 2.0 (EASE-2) Grid system (36 km)



flags_corr



[Flag1] correlation flag



flags_n_valid



[Flag2] valid number flag



flags_fMSE



[Flag3] fMSE flag



flags_negative_vars_err 



[Flag4] negative error variance flag 



SMAP_SM



SMAP soil moisture



SMAP_TCA_err



SMAP soil moisture TCA error (before reconstruction)



SMAP_TCA_err_recons_LGBM



SMAP soil moisture TCA error (after reconstruction by LGBM)



SMAP_TCA_err_recons_DNN



SMAP soil moisture TCA error (after reconstruction by DNN)






Note: The current dataset includes only the 2022 data, although the full data period spans from 2015 to 2023. Please be aware that if the data is updated, the Zenodo link will change. In that case, please visit https://www.hydroai.net or contact the data manager directly (subinkim8774@gm.gist.ac.kr) to download the dataset.
DOI: 10.15468/dl.xcy6a9
title: Occurrence Download

description: A dataset containing 1355092 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Charadrius dubius Scopoli, 1786"
 ]
}

 The dataset includes 1355092 records from 1620 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000053-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26637612.v1
title: Additional file 5 of Longitudinal metagenomic study reveals the dynamics of fecal antibiotic resistome in pigs throughout the lifetime

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.26637615.v1
title: Additional file 6 of Longitudinal metagenomic study reveals the dynamics of fecal antibiotic resistome in pigs throughout the lifetime

description: Supplementary Material 6
DOI: 10.15468/dl.nf54eb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.104498 -34.361257, 148.104498 -34.363502, 148.100006 -34.363502, 148.100006 -34.374731, 148.104498 -34.374731, 148.104498 -34.383715, 148.108989 -34.383715, 148.108989 -34.376977, 148.113481 -34.376977, 148.113481 -34.37024, 148.108989 -34.37024, 148.108989 -34.367994, 148.106743 -34.367994, 148.106743 -34.361257, 148.104498 -34.361257))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071034-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26638080
title: Additional file 5 of Identification of ferroptosis-related genes in acute phase of temporal lobe epilepsy based on bioinformatic analysis

description: Supplementary Material 5
DOI: 10.17632/spvxxsfvg9.1
title: LAD_data

description: A Nomogram for Predicting Heterogeneous Etiology of Atherosclerosis in the Left Anterior Descending Coronary Artery Using Geometric Morphological Parameters.
DOI: 10.6084/m9.figshare.24532284
title: Additional file 3 of AMPK activator-treated human cardiac spheres enhance maturation and enable pathological modeling

description: Additional file 3. Metabolic feature table.
DOI: 10.17632/sxn4b4zccv.1
title: Long-Term Institutional Investors and Managerial Disclosure Opportunism

description: The sample data comes from the China Stock Market and Accounting Research database which is widely used in studies of China’s capital market and listed firms. We start from 41,577 observations for 4,243 A-share firms in Shanghai and Shenzhen Stock Exchanges from 2004 to 2020. The initial sample year 2004 is the time when the insurance companies are allowed to directly engage in equity investment. We exclude 849 observations in the financial industry and 3,038 observations with missing values for key variables. After the above filtering, the final sample consists of 37,960 firm-year observations for 3,773 unique firms. Sample size changes in the channel and cross-sectional analysis due to the missing value of conditional variables.
DOI: 10.6084/m9.figshare.26636031
title: Additional file 2 of NRTPredictor: identifying rice root cell state in single-cell RNA-seq via ensemble learning

description: Additional file 2: Table S1. The cell subpopulations of Nipponbare root tips data composition. Table S2. The cell subpopulations of Arabidopsis root tips data composition. Table S3. Performance comparison between NRTPredictor and the other algorithms (Arabidopsis dataset). Table S4. Pseudobulk differential expression analysis of rice root scRNA-seq data (3463 cells，39,217 genes) using DESeq2. Table S5. Marker genes and cell states. Table S6. Results of Kyoto Encyclopedia of Genomes (KEGG) enrichment analysis of 110 marker genes. Table S7. Annotation form for 110 marker genes.
DOI: 10.17632/fsf2z9zzzb.1
title: yinghong2408

description: Results: COL10A1, ZNF587, and TFAP2A were identified as biomarkers according to multiple analysis. The AUC value of biomarkers was greater than 0.7, and biomarkers had significant difference and consistent expression trends between BC and control groups in two datasets. Moreover, 6 differential immune cells, including macrophages, monocytes were screened out between BC and control groups. Finally, 3 potential therapeutic drugs targeting TFAP2A, which included nelfinavir, indinavir and amprenavir were identified from the DG1db database .
Conclusion: Overall, three EIS-related biomarkers (COL10A1, ZNF587, and TFAP2A) associated with BC were identified, laying a theoretical foundation for the treatment of BC.
DOI: 10.15468/dl.7pftdj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.735567 -34.363502, 148.735567 -34.367994, 148.742304 -34.367994, 148.742304 -34.363502, 148.735567 -34.363502)), ((148.742304 -34.367994, 148.742304 -34.37024, 148.753533 -34.37024, 148.753533 -34.374731, 148.758025 -34.374731, 148.758025 -34.367994, 148.753533 -34.367994, 148.753533 -34.363502, 148.751288 -34.363502, 148.751288 -34.367994, 148.742304 -34.367994)), ((148.753533 -34.374731, 148.751288 -34.374731, 148.751288 -34.376977, 148.753533 -34.376977, 148.753533 -34.374731)), ((148.753533 -34.376977, 148.753533 -34.379223, 148.758025 -34.379223, 148.758025 -34.376977, 148.753533 -34.376977)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071035-240626123714530/datasets/export for details.
DOI: 10.17632/z7gtkhycb8.1
title: Usefulness of GeoGebra in development of cognitive and affective domain

description: This data describes the responses from the teachers on the role of GeoGebra in development of affective and cognitive domain in learning Limits and continuity of function
DOI: 10.17632/w8xm9hwpmp.1
title: Avifauna Community Assessment in the Green Spaces of the Kwame Nkrumah University of Science and Technology, Ghana

description: Data on birds in Ghana
DOI: 10.17632/hbkyhtjc98.1
title: Orientações para transmissão das informações pertinentes ao autocuidado e prevenção de incapacidades para os pacientes que se encontram em atendimento da Fundação Hospital Alfredo da Matta

description: Nota Técnica elaborada com o objetivo de dar orientações, no que se refere à legislação vigente e ao escopo dos procedimentos, para o processo de implantação do grupo na instituição Fundação Alfredo da Matta.
DOI: 10.17632/ry88677566.1
title: Risk estimation tool spreadsheet

description: The data derived risk estimation tool spreadsheet that assesses the risk of migrants developing TB within a 6 month period of being issued a visa.
DOI: 10.17632/wrv2g7jn29.1
title: PROPOSTA: painel de marcadores genéticos capaz de identificar prováveis contatos de hanseníase de adoecerem.

description: Investigação de painel de marcadores genéticos capaz de identificar prováveis contatos de hanseníase de adoecerem.
DOI: 10.6084/m9.figshare.26638134.v1
title: Additional file 5 of Maternal microbiota communicates with the fetus through microbiota-derived extracellular vesicles

description: Additional file 5. Proteins_swissprot.
DOI: 10.15468/dl.nq3amk
title: Occurrence Download

description: A dataset containing 15034 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is 成龍溼地鳥類生態紀錄"
 ]
}

 The dataset includes 15034 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071036-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26636067
title: Additional file 2 of MYL9 expressed in cancer-associated fibroblasts regulate the immune microenvironment of colorectal cancer and promotes tumor progression in an autocrine manner

description: Additional file 2.
DOI: 10.6084/m9.figshare.26635749.v1
title: Additional file 6 of Complete mitogenome assembly of Selenicereus monacanthus revealed its molecular features, genome evolution, and phylogenetic implications

description: Supplementary Material 6
DOI: 10.17632/mytwsx78d6.1
title: Datasets for study on Adaptation Strategies for Deficit Irrigation management under extreme climate conditions

description: This repository contains modified weather data and DSSAT experimental files related to this study
DOI: 10.15468/dl.pqcrh2
title: Occurrence Download

description: A dataset containing 15034 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is 成龍溼地鳥類生態紀錄"
 ]
}

 The dataset includes 15034 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071037-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w4qgja
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Registros de hongos fitopatógenos y hongos no patogénicos aislados de Tomate en Colombia"
 ]
}

 The dataset includes 176 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071038-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g6bb3b
title: Occurrence Download

description: A dataset containing 4557 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kinosternon scorpioides (Linnaeus, 1766)"
 ]
}

 The dataset includes 4557 records from 156 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071039-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.24qtxz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((146.909732 -34.367994, 146.909732 -34.376977, 146.911978 -34.376977, 146.911978 -34.367994, 146.909732 -34.367994))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071040-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26635863.v1
title: Additional file 1 of Identification of novel diagnostic panel for mild cognitive impairment and Alzheimer’s disease: findings based on urine proteomics and machine learning

description: Additional file 1: Fig. S1. GSEA results for all proteins included for analysis (p&lt;0.05). AD-CN A-D The results of the AD-CN group. A. Biological processes enriched in AD-CN group; B. Cellular components enriched in AD-CN group; C. Molecular functions enriched in AD-CN group; D. Kegg pathway enriched in AD-CN group. MCI-CN The results of the MCI-CN group. A. Biological processes enriched in MCI-CN group; B. Cellular components enriched in MCI-CN group; C. Molecular functions enriched in MCI-CN group; D. Kegg pathway enriched in MCI-CN group. AD-MCI A-D The results of the AD-MCI group. A. Biological processes enriched in AD-MCI group; B. Cellular components enriched in AD-MCI group; C. Molecular functions enriched in AD-MCI group; D. Kegg pathway enriched in AD-MCI group.
DOI: 10.17632/fbz6jgnz7f.1
title: Supplemental Table 2: Baseline cardiometabolic risk factors, referral eligibility and labs overdue stratified by psoriasis and hidradenitis suppurativa

description: Characteristics and lab/referral eligibility for patients with psoriasis and hidradenitis suppurativa who underwent cardiometabolic risk factor screening using a patient navigator care coordination model at a safety net institution.
DOI: 10.6084/m9.figshare.26637942
title: Additional file 3 of iTRAQ-based proteomics reveals potential markers and treatment pathways for acute Achilles tendon rupture

description: Additional file 3. Table S3. Screening of differentially expressed proteins from the iTRAQ-LC/MS/MS data.
DOI: 10.6084/m9.figshare.26637636.v1
title: Additional file 4 of Changing turn-over rates regulate abundance of tryptophan, GS biosynthesis, IAA transport and photosynthesis proteins in Arabidopsis growth defense transitions

description: Additional file 4. Relative isotopic abundance (RIA) in partial labeling experimens in Col-0 (untreated and exposed to flg22) and myc234 (exposed to flg22).
DOI: 10.6084/m9.figshare.26637633
title: Additional file 3 of Changing turn-over rates regulate abundance of tryptophan, GS biosynthesis, IAA transport and photosynthesis proteins in Arabidopsis growth defense transitions

description: Additional file 3. SRM LC-MS of phytohormones in Col-0 and myc234.
DOI: 10.6084/m9.figshare.26637849.v1
title: Additional file 5 of The oral bacterial microbiota facilitates the stratification for ulcerative colitis patients with oral ulcers

description: Additional file 5: Supplementary tables. Table S1. Bacterial alpha diversity of each sample. Table S2. Bray Curtis distance of each sample. Table S3. Shared bacterial families and genera in three different GI niches. Table S4. Specific bacterial abundance for the ternary plot. Table S5. Relative bacterial family abundance of each sample. Table S6. Relative bacterial genus abundance of each sample. Table S7. Comparative analysis for bacterial community in the salivary samples (all results presented). Table S8. Comparative analysis for bio-function in the salivary samples (only significant results presented). Table S9. Comparative analysis for bacterial community in the buccal samples (all results presented). Table S10. Comparative analysis for bio-function in the buccal samples (only significant results presented). Table S11. Comparative analysis for bacterial community in the fecal samples (all results presented). Table S12. Comparative analysis for bio-function in the fecal samples (only significant results presented). Table S13. Correlative analysis between clinical parameters (inflammatory and immunological) and bacterial diversity (alpha and beta). Table S14. Bacterial comparative analysis of UC patients with or without treatment response at three different GI niches.
DOI: 10.6084/m9.figshare.26637645
title: Additional file 7 of Changing turn-over rates regulate abundance of tryptophan, GS biosynthesis, IAA transport and photosynthesis proteins in Arabidopsis growth defense transitions

description: Additional file 7. Protein to transcript ratios in Col-0 and myc234.
DOI: 10.6084/m9.figshare.26722329
title: Additional file 1 of Ensuring universal access to quality care for persons with presumed tuberculosis reaching the private sector: lessons from Kerala

description: Supplementary Material 1. Abstract in Malayalam.
DOI: 10.15131/shef.data.26519497
title: Metabolomic Data of Evolved Strains

description: Following Chapter 4 of my thesis, 3 E.coli strains (MG1655, F022 and ELU39) were analysed using untargeted metabolomics after ~700 generations of evolution in 1 of three conditions: Plasmid free, plasmid carrying and plasmid carrying with antibiotic selection.
Files are metabolomic peak table data after processing in xcms.
XCMS diffreport files are the output from xcms peak picking processing.
Peak tables are the formatted versions and techav peak tables are further condensed by averaging technical replicates
Raw data is too large to be uploaded, please contact the University of Sheffield Mass Spectrometry Department (massspectrometry@sheffield.ac.uk) where data is stored under Mass Spec -&gt; Metabolomics -&gt; Kathryn -&gt; Evolved
<br>
DOI: 10.17632/3d6szfs894.1
title: Tenant Energy Advocacy (TEA) project interview transcripts

description: Individual qualitative interviews from the TEA project, including i) interviews with low-income tenants living in New Haven, CT about their experiences of energy burden, the connection between energy bills and home energy efficiency, landlord behavior regarding rental unit efficiency, experience with energy efficiency programs, prior experience with advocacy/organizing, perceptions of potential to advocate collectively for improved energy efficiency for low-income rental units; ii) interviews with four landlords about their perceptions about and experiences with energy efficiency of their rental units; iii) interviews with six activists about their collective action experience and advice about energy efficiency advocacy
DOI: 10.6084/m9.figshare.26722329.v1
title: Additional file 1 of Ensuring universal access to quality care for persons with presumed tuberculosis reaching the private sector: lessons from Kerala

description: Supplementary Material 1. Abstract in Malayalam.
DOI: 10.6084/m9.figshare.26722191.v1
title: Additional file 2 of Nitrogen starvation causes lipid remodeling in Rhodotorula toruloides

description: Additional file 2. Table S1. Clustering identities of the listed mRNA.
DOI: 10.6084/m9.figshare.24540866.v1
title: Additional file 2 of Induction of the CtsR regulon improves Xylanase production in Bacillus subtilis

description: Additional file 2. Table S2. The GINtool analysis results for all regulons of 3 h and 6 h samples.
DOI: 10.15468/dl.ut8a3a
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.617159 -34.367994, 147.617159 -34.383715, 147.621651 -34.383715, 147.621651 -34.367994, 147.617159 -34.367994))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071041-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.24540866
title: Additional file 2 of Induction of the CtsR regulon improves Xylanase production in Bacillus subtilis

description: Additional file 2. Table S2. The GINtool analysis results for all regulons of 3 h and 6 h samples.
DOI: 10.17632/rzft8jnt7k.1
title: Database: Designing an environmental tax on carbon emissions to meet EU targets: a proposal for the Spanish economy

description: The database used in the above-mentioned research. Consists of a social accounting matrix constructed for Spain with base year 2016. It is presented in .xlsx and .gms formats.
DOI: 10.6084/m9.figshare.26722332
title: Additional file 1 of A study on vertebral refracture and scoliosis after percutaneous kyphoplasty in patients with osteoporotic vertebral compression fractures

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26701543
title: Data for discovering changes in cell stability using process mining -- a case study

description: <b>Discovering Changes in Cell Stability Using Process Mining: A Case Study</b><b>Abstract</b> − A bioprocess is a series of biological, chemical, and physical operations used to produce a product using living cells or their components. Bioprocesses are often used for the production of monoclonal antibodies (mAbs). The first step of the mAb production bioprocess is to take a vial containing a small amount of the selected cell line and grow those cells until they are of sufficient quantity. This step is known as the seed train in bioprocess development. During the seed train phase, it is essential to monitor the stability of the cells and their growth due to challenges such as variations in cell behaviour, batch-to-batch differences, and potential changes in cultivation conditions. In this paper, we present a case study where process mining is used to analyse the stability of cell lines during the seed train phase at a large pharmaceutical company in Australia. In order to do so, first it was necessary to transform the collected seed train data into an event log. Next, process models were discovered for high- and low-growth seed trains. We then derived insights into the performance of the seed train growth rate whereby characteristics of cell cultures in early stages can be associated with growth rate performance in later stages. Finally, we showed how the discovered models can be used to predict the growth performance of new seed trains.<b>Resource description</b> − This resource contains de-identified data used in the mentioned paper. All dates have been adjusted by randomly adding between 0 and 200 years.