cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/jcw4xkp886
title: Missing Values Handling for Machine Learning Portfolios

description: Documentation, code, and pseudo data for replicating Chen and McCoy (Forthcoming, Journal of Financial Economics, https://arxiv.org/pdf/2207.13071.pdf), to satisfy the journal's code and data sharing requirements. Instead of this packet, we recommend using the code posted on github (https://github.com/jack-mccoy/missing_data), which contains all previous versions of the code and allows for issue tracking (should it be needed). Code from either source automatically downloads stock return data from WRDS and return predictors from https://sites.google.com/site/chenandrewy/, so the pseudo data is not really necessary. You can also find imputed predictor data at https://sites.google.com/site/chenandrewy/.
DOI: 10.17632/x948kyy7jh
title: Implementing a neural network interatomic model with performance portability for emerging exascale architectures

description: The two main thrusts of computational science are increasingly accurate predictions and faster calculations; to this end, the zeitgeist in molecular dynamics (MD) simulations is pursuing machine learned and data driven interatomic models, e.g. neural network potentials, and novel hardware architectures, e.g. GPUs. Current implementations of neural network potentials are orders of magnitude slower than traditional interatomic models and while looming exascale computing offers the ability to run large, accurate simulations with these models, achieving portable performance for MD with new and varied exascale hardware requires rethinking traditional algorithms, using novel data structures, and library solutions. We re-implement a neural network interatomic model in CabanaMD, an MD proxy application, built on libraries developed for performance portability. Our implementation shows significantly improved thread scaling in this complex kernel as compared to a current LAMMPS implementation, across both strong and weak scaling. Our single-source solution enables simulations up to 20 million atoms on a single CPU node and 4 million atoms with improved performance on a single GPU. We also explore parallelism and data layout choices (using flexible data structures called AoSoAs) and their effect on performance, seeing up to ∼50% and ∼5% improvements in performance on a GPU by choosing the right level of parallelism and data layout respectively.
DOI: 10.17632/677z4vzm4k
title: Data for: Preferential Trade Agreements and Antidumping Protection

description: The zip folder contains all the data and codes to reproduced the results in the paper. It also contains the dataset with the dates on PTA formation collected as part of this project.
DOI: 10.17632/ykypdppy9n
title: A model for the interplay between tradeoff plasticity and evolution in changing environment

description: MATLAB simulation code and scripts reproducing all figures in Tikhonov, Kachru, Fisher (2020), "A model for the interplay between tradeoff plasticity and evolution in changing environment". Optional pre-computed simulation data included to speed-up figure plotting; remove or rename any data file to rerun the relevant simulations from scratch.
DOI: 10.6084/m9.figshare.6051794.v5
title: Residential Wearable RSSI and Accelerometer Measurements with Detailed Annotations

description: <b>Context</b><b></b><br>This repository offers smart-home wearable accelerometer and Radio Signal Strength (RSS) data acquired : 1) with low-cost hardware 2) with high-resolution location annotations 3) from four lived-in premises.<br><b>Instructions</b><br><br>1. Download and unzip the dataset.<br><br>2. Navigate to:<br><i>ble-accelerometer-indoor-localisation-measurements/codes/load_dataset_py</i><br><br><br>3. Install prerequisites: <br><i>pip -r install requirements.txt</i><br><br>4.Run the sample module to load and view the measurements : <br><i>python3 src/load_data.py</i><i><br></i><i><br></i><b>Further Information</b><i><br></i><i><br></i>Please cite: Byrne, D., Kozlowski, M., Santos-Rodriguez, R., Piechocki, R. & Craddock, I. Residential wearable RSSI and accelerometer measurements with detailed location annotations. Sci. Data 5, 180168 (2018). https://www.nature.com/articles/sdata2018168<br> Thanks to: Raul Santos-Rodriguez, Robert Piechocki, Ian Craddock, SPHERE IRC team, Beatriz Monsalve-Carcalen and Raimon Fransoy.
DOI: 10.17632/34m3y59jfr
title: Data for: Conversion of Cerrado savannas into exotic pastures: the relative importance of vegetation and food resources for dung beetle assemblages

description: Vegetation file shows data of vegetation density, complexity (fractal) and canopy cover. Species database shows data of dung beetles collected in native savannas and exotic pastures in Brazil.
DOI: 10.17632/g5r8tnxczt
title: Point data with small hydrpower locations, Central Equatoria State, South sudan

description: This supplementary material is part of the research titled "Preliminary assessment of small hydropower potential using the Soil and Water Assessment Tool Model: A case study of Central Equatoria State, South Sudan". The material contains point data with small hydropower locations in Central Equatoria State, South Sudan and other datasets used in building the SWAT model.
DOI: 10.6084/m9.figshare.20249376.v1
title: Data_Prediction of genetic values according to the dimensionality reduction of SNP's markers in complex models

description: <strong>Genomic prediction according to dimensionality reduction</strong>
DOI: 10.17632/d77ft85tjf
title: The December 2018 ML 5.7 and January 2019 ML 5.3 Earthquakes in South Sichuan Basin Induced by Shale Gas Hydraulic Fracturing

description: The data set contains three files, 1) "2018-20190123.eqt" for catalogue of earthquakes occurred from 1 January 2018 to 23 January 2019, 2) "HypoDD.reloc" for relocated hypocenters, and 3) "Lei_SRL_2019.cmt" for centroid moment tensors used in Lei, et al. (2019), The December 2018 ML 5.7 and January 2019 ML 5.3 Earthquakes in South Sichuan Basin Induced by Shale Gas Hydraulic Fracturing, Seismological Research Letters, 90(3), 1099-1110, doi:10.1785/0220190029.
DOI: 10.17632/mhvsdwcnf5
title: Microbiota-Gut-Brain Axis Drives Overeating Disorders

description: Raw data of this paper
DOI: 10.6084/m9.figshare.28521665.v1
title: Distribution patterns of Platycodon grandiflorus from the last inter-glacial period to the future by ecological niche modeling

description: Global climate change may represent a significant threat to the distribution and quality of medicinal plants, altering cultivation areas and compromising the quality of medical materials. Platycodon grandiflorus, a traditional Chinese medicinal herb, has a millennia-long medicinal and culinary use history in East Asia. Given its escalating demand, accurately evaluating the changes under different climate scenarios and predicting its potential distribution are imperative for ensuring its conservation and sustainable utilization. By integrating MaxEnt with ArcGIS, this study advances previous approaches by incorporating historical, present, and future climate data to model the distribution dynamics of P. grandiflorus acrossChina. The results indicated: (1) The species' distribution strongly correlates with environmental variables, particularly bio13, prec07, prec09 and tmin07, whose cumulative value of percent contribution was 78.5%; (2) The centroids of potential geographic distribution during the LIG, LGM, and MH periods were situated further westward compared tothe present distribution, with substantial contraction observed in highly suitable habitats throughout these historical periods; (3) Under present climatic conditions, the overall suitable habitat encompasses4,185,964 km2, withhighly suitable habitats constitutingone-third of this expanse, predominantlyconcentrated in central, southern, and northeasternChina; (4) Future climate change scenarios predict that the total suitable habitat will expand to varying degrees (7% increase on average), albeit with potential reductions in highly suitable areas (3% decrease on average); (5) The distribution of P. grandiflorus is likely to move towards higher latitudes in the future due to climate changes. Our findings fill a critical knowledge gap by quantifying the impact of climate change on the distribution of P. grandiflorus. These resultsoffer crucialinsights for developing effective conservation strategies, promoting sustainable utilization, and establishing standardized cultivation protocols for P. grandiflorus resources.
DOI: 10.17632/gh8p6p6wvs
title: Data for: The Role of Complete Posterior Cruciate Ligament Release in Flexion Gap Balancing for Total Knee Arthroplasty

description: Technique description of total knee arthroplasty
DOI: 10.17632/4zg97fdfzk
title: Collected experimental data of FRCM tensile response

description: The database includes the collected  available experimental results  of FRCM tensile response. The experimental data concern the results of more than 750 tensile tests carried out on FRCM coupons, made with different types of constituent materials (mortar and fiber grid), different geometrical properties and tested with different test set-ups.
DOI: 10.17632/8t72cvn7rn
title: Diversity and complexity of auditory representation in the hearing systems of Aedes aegypti mosquitoes (Materials excluding calcium imaging)

description: Materials other than calcium imaging including Supplementary files 1 - 12 (html versions)
DOI: 10.6084/m9.figshare.24707970.v1
title: Data used in manuscript titled "How strong is enemy release? A systematic compilation across taxa and approaches".

description: Literature compilation data on the strength and occurence of enemy release.
DOI: 10.6084/m9.figshare.28561166.v1
title: A Bibliometric analysis of worldwide scientific production in Taekwondo

description: Search strategy of scientific articles in databases.Most cited articles on taekwondo until 2024.
DOI: 10.17632/5dpc5gbgpz
title: Tobacco Aerial Dataset

description: To capture aerial dataset of tobacco and weed, a Mavic Mini drone was employed.
Between the ages of 15 and 40 days, eight tobacco fields in Mardan, Khyber Pakhtunkhwa, Pakistan, were photographed. The dataset is captured at an average altitude of 4 metres and a ground sampling distance of 0.1 cm per pixel.
Pictures were captured for both datasets at a resolution of 1920 × 1080 pixels, however for faster processing, we cropped non-overlapping images to a size of 480 x 352 pixels. Using the MATLAB Image Labeler app, we labelled the photos by hand. A label image in 8-bit unsigned grayscale is produced by the software. The depicted image has the pixel values 0, 1, and 2 assigned to the background, crop, and weed, respectively. Since there are no aerial dataset available publicly to the best of our knowledge, these datasets could be utilized to support further research for Tobacco crop.
Tobacco dataset is captured in eight different drone fly campaigns on eight different fields as shown in table below.

Campaign No.	Number of images	     Timing Around/ Date Captured	Soil Condition
1	                         864	                             2:30pm/09April 21	                        After irrigation
2	                         936	                             3:30pm/07April 21	                        Before irrigation
3	                         120	                             3:38pm/07April 21	                        After irrigation
4	                         120	                             5:52pm/07April 21	                        Before irrigation
5	                         120	                             6:33pm/07April 21	                        After irrigation
6	                         120	                             3:27pm/09April 21	                        After irrigation
7	                         120	                             3:43pm/09April 21	                        Before irrigation
8	                         120	                             3:59pm/09April 21	                        After irrigation

Citation Request: if you use these datasets in your research or projects by any means, please cite following publications. 
1) Patch-wise weeds coarse segmentation mask from aerial imagery of sesame crop
(Published in Computers and Electronics in Agriculture 2022, HEC Recognized W category, Impact factor 6.757, Q1)
2) Towards automated weed detection through two-stage semantic segmentation of tobacco and weed pixels in aerial Imagery 
(Published in Smart Agricultural Technology (A companion journal of Computers and Electronics in Agriculture))
3) A Patch-Image Based Classification Approach for Detection of Weeds in Sugar Beet Crop
(Published in IEEE Access, Impact factor 3.1, Q1)

Acknowledgement Request
This work is funded by the Higher Education Commission of Pakistan and the National center for Robotics and Automation (DF-1009–31). Please Acknowledge.

Find More data  and research papers in related links attached.
DOI: 10.6084/m9.figshare.12885470.v1
title: Gene annotations (GFF)

description: Gene annotations for 8 de novo soybean assemblies in GFF format.
DOI: 10.17632/sv4mns9fk4
title: Data for: Testing the effectiveness of the Internet-based instrument PsyToolkit: a comparison between web-based (PsyToolkit) and lab-based (E-Prime 3.0) measurements of response choice and response time in a complex psycholinguistic task.

description: Raw experimental and compiled demographic data for two experiments conducted during the research phase for "Testing the effectiveness of the Internet-based instrument PsyToolkit". Raw demographic data was not included to protect anonymity; as such, .txt files are included containing the important demographic factors for both internet-based (OnlineDemographics.txt) and laboratory-based (OfflineDemographics.txt) experiments. Three .rmd file containing the code we used for data preparation and analysis are also included. Firstly, there is a master script where data is prepared and analysed together (MasterScriptBothPreparationAndAnalysis.rmd). Secondly, there are separate scripts included for running the data preparation (DataPreparation.rmd) and data analysis (DataAnalysis.rmd) separately. These scripts are identical to what is included in the master script under Preparation and Analysis, and are included to make it easier to examine the code in each of these sections. Output .txt files from the data preparation phase are also included (AllCompiled.txt, OfflineExperimentAll.txt, OfflineCompiled.txt, OnlineCompiled.txt), to allow for running the analysis without needing first to run the data preparation. If removing these files prior to running the data preparation script or master script, please be careful to not remove the demographics files.
DOI: 10.17632/dn9h5k4tpf
title: AsCas12f

description: Image data related to Hino et al., An AsCas12f-based compact genome editing tool derived by deep mutational scanning and structural analysis.
DOI: 10.17632/m873dbhy9j
title: Fetal Movement Dataset Recorded Using Four Inertial Measurement Units

description: The dataset contains tri-axial accelerometer and tri-axial gyroscope readings from the four IMUs and labels. There are three sub-datasets, which have different ground-truth labelling configurations, included in this dataset. Please note that the labelling is subjective to the mother's perception. The dataset, as a whole, contains recordings spanning 14 weeks from 26th week to 39th week and in total, about 71 hours of recordings. 

The three sub-datasets included are:

Sub-dataset One: 
In this sub-dataset, only the occurrence of the particular type of fetal movement known as the fetal kick is considered for ground-truth labelling. 

Sub-dataset Two:
All types of fetal movement felt by the mother -- including trunk movement, isolated limb movement, and general body movement -- were considered for ground truth-labelling as fetal movements in this sub-dataset.

Sub-dataset Three: 
In this sub-dataset, the emphasis was given to the classification of different types of fetal movements. Three types of fetal movements are labelled: trunk movement, isolated limb movement, and general body movement.

Additional data are provided in three additional 'csv' files, which contains the record number, the Period of Amenorrhoea (POA), start time, and end time of each recording. Also, additional details about the mother and the baby are provided in the README file.

For more details, refer to the README.pdf.
DOI: 10.17632/zfwgpx8nj6
title: A phase 2 open-label study of cemiplimab in patients with advanced cutaneous squamous cell carcinoma (EMPOWER-CSCC-1): Final long-term analysis of Groups 1, 2, and 3, and primary analysis of fixed-dose treatment Group 6

description: In this phase 2, open-label, observational, non-randomized multi-cohort study (NCT02760498) we report the final analysis of weight-based cemiplimab monotherapy (3 mg/kg intravenous [IV] every 2 weeks) in metastatic cutaneous squamous cell carcinoma (mCSCC, Group 1) and locally advanced cutaneous squamous cell carcinoma (laCSCC, Group 2), fixed-dose (350 mg IV every 3 weeks) cemiplimab in mCSCC (Group 3), and the primary analysis of fixed-dose (350 mg IV every 3 weeks) cemiplimab in mCSCC/laCSCC (Group 6). 

The primary efficacy endpoint was objective response rate (ORR; defined as complete response + partial response) per independent central review in each group. Secondary endpoints were estimated ORR per investigator’s assessment; complete response per independent central review; duration of response, progression-free survival, and overall survival by independent central review and investigator’s assessment. Safety assessments included immune-related treatment-emergent adverse events and treatment-emergent adverse events (graded by the National Cancer Institute Common Terminology Criteria for Adverse Events v.4.03). 

This study represents the largest prospective data set for patients with advanced CSCC treated with anti-programmed cell death-1 therapy. Cemiplimab demonstrated clinically meaningful activity in patients with mCSCC and laCSCC, regardless of biomarker status and age. The final analysis of Groups 1–3 demonstrated prolonged duration of response in the longest follow-up reported so far, while the primary analysis of Group 6 confirmed the clinical activity of cemiplimab at a fixed dose. The safety profile for cemiplimab was generally consistent with data reported for other anti-programmed cell death-1/programmed cell death-ligand 1 agents. 

Currently, cemiplimab monotherapy is the current standard-of-care option for patients with advanced CSCC ineligible for curative surgery or radiation. The results of this study support the use of cemiplimab in advanced CSCC.
DOI: 10.4121/18614102.v1
title: CloudBrake wind measurement flights on three cumulus days

description: This dataset contains the data from three CloudBrake dual-aeroplane flights executed by the Deutsches Zentrum für Luft- und Raumfahrt (DLR) in Munich. The Falcon aeroplane flew at constant altitude carrying a downward looking Doppler Wind Lidar, from which we obtained a wind profile for the east-west, north-south and up-down component and also provided as wind speed and wind (from) direction as is the meteorological standard. These netcdf files have the format yyyymmdd_L2.nc The authors are Stephan Rahm and Benjamin Witschs.<br> <br> A second airplane flew in the mixed-layer, near cloud base, in the cloud layer and at cloud top and took in-situ measurements at 100 Hz, of among others the three wind components, temperature and humidity. The netcdf files are named in the following format: fldr_yyyymmdd_LEG##.nc. Author is Christian Mallaun <br> Flight reports are written during flight by Louise Nuijens. <br> The dataset can be found on the OPeNDAP server: https://opendap.tudelft.nl/thredds/catalog/data2/fig/18614102/1/catalog.html<br>
DOI: 10.6084/m9.figshare.14814810.v1
title: Draft genome of incense tree Aquilaria crassna

description: Lign aloes or incense trees in the genus <i>Aquilaria</i> (Thymelaeaceae) are native to the forests of southeast Asia and can produce agarwood. Among the twenty species in this genus that have been assessed for the IUCN Red List, thirteen of them are threatened with extinction. Nevertheless, only<br> the genomic resource of <i>Aquilaria sinensis</i> and <i>Aquilaria agallocha </i>are currently available. Here, we present a draft genome assembly for the critically endangered <i>Aquilaria</i><i> crassna</i>, a lign aloe distributed throughout southeast Asia, based on 10X Genomics linked-read. The 777.3 Mb genome assembly has a scaffold N50 of 40kb and is of reasonably high completeness, with 89.8% BUSCO score. Comparative analyses of terpenoid pathway and WRKY transcription factor genes were carried out. This study enriches the genomic resources for trees in the genus <i>Aquilaria</i> of economic and conservation values.
DOI: 10.6084/m9.figshare.21267924.v1
title: Data and scripts associated with: Benthic composition changes on coral reefs at global scales

description: This data record contains data and scripts associated with the publication: <br> Tebbett SB, Connolly SR, Bellwood DR. Benthic composition changes on coral reefs at global scales. Nature Ecology and Evolution <br> In this study we wanted to gain an insight into likely coral reef configurations of the near future. Specifically we focused on two relatively straightforward questions: 1) how is the benthic composition of coral reefs changing at a global scale? and 2) how, and to what extent, do these changes vary among major marine realms? To explore these questions, we compiled an extensive, global, dataset composed of observations of coral reef benthic composition (cover of 6 benthic categories). <br> The individual datapoints in our dataset were mean site level (i.e. a unique latitude and longitude) benthic community composition data. The six benthic categories were: hard coral, soft corals, macroalgae, low lying algae, sand, and other. We sourced all data from publicly availably databases (all references are supplied in CSV file 1) and previous literature (references and data supplied in CSV files 2 and 3). Specifically, we compiled benthic composition data from six major publicly available monitoring databases: Reef Check, Reef Check Australia, Reef Life Survey, Caribbean Coastal Marine Productivity (CARICOMP), Moorea Coral Reef Long Term Ecological Research and the National Oceanic and Atmospheric Administration (NOAA). The raw data from these six publicly available databases can be accessed through the list of references and relevant accession details listed in CSV file 1. There are 48 references listed in this file as these detail the specific location of each individual data source within these broader databases to ensure raw data can be easily located. To complement the data from these databases and to ensure that our dataset was comprehensive, we then undertook an extensive formal search of the literature for available data. Ultimately, this search process resulted in 83 publications with data that could be used in our study. The references and derived data from these 83 studies are provided in CSV files 2 and 3. <br> This data publication also includes four R scripts (R markdown files) that detail the statistical analyses and compilation of figures from the main text in the manuscript. <br> For full methodological details, please see the published manuscript (outlined above). <br> Further details of the files associated with this data publication can also be found in the 'read me' file.
DOI: 10.6084/m9.figshare.23695302.v2
title: <strong>DNA sequences encoding mammalian expression of putative transient </strong> <strong>transfection-sensor (Trensor) genes </strong>

description: Sequence data evidencing synthesis and assembly of three plasmids encoding genes intended to be induced when cells undergo transient transfection or are exposed to small molecules that enhance transient transfection performance. Please open the file: "READ ME Trensor Seq 300824.pdf" for an explanation of the plasmid design and assembly, and description of each of the sequencing files.