cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34943/502756ec-48d9-4415-aac2-bbe81b6ae9a1
title: Jason 2 Oxygen Sensor Deployed 2015-09-01

description: The Aanderaa Optode 4831 (S/N 471) was deployed on 2015-09-01 on Jason 2. This Remotely Operated Vehicle is operated by Woods Hole Oceanographic Institution (WHOI). This device is a Oxygen Sensor. Oxygen sensors measure dissolved oxygen concentration in seawater. It was deployed on a mobile platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/e7db80fc-5955-4cf8-b302-4c7ec3ed9902
title: Strait of Georgia East Adapter Deployed 2015-09-14

description: The JASCO AMAR Observer G3 209 was deployed on 2015-09-14 at Strait of Georgia East. Strait of Georgia East refers to an eastern area of the Strait of Georgia. This device is a Adapter. Instrument adapters connect a variety of sensors and instruments. Typically, these devices do not collect any data, and our digital infrastructure system does not communicate with them. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/8e7b3595-38d6-4651-a240-b5be6a84f5e4
title: Strait of Georgia East Adapter Deployed 2015-09-14

description: The JASCO AMAR Observer G3 210 was deployed on 2015-09-14 at Strait of Georgia East. Strait of Georgia East refers to an eastern area of the Strait of Georgia. This device is a Adapter. Instrument adapters connect a variety of sensors and instruments. Typically, these devices do not collect any data, and our digital infrastructure system does not communicate with them. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.5281/zenodo.12116073
title: DYNA: Disease-Specific Language Model for Variant Pathogenicity

description: For coding variant effect predictions (VEPs), our approach centers on clinical variant sets specifically related to inherited cardiomyopathies (CM) and arrhythmias (ARM). We utilize a pre-compiled dataset comprised of rare missense pathogenic and benign variants, categorized using a cohort-based approach for diseases such as cardiomyopathy and arrhythmias, as detailed in the previous report by Zhang et al. ClinVar CM and ARM datasets include all missense variants in CM and ARM, respectively, are extracted from ClinVar (Landrum et al.). In the realm of non-coding VEPs, our focus shifts to splicing-related variants, utilizing a dataset from the multiplexed assay for exon recognition by Chong et al., which highlights the significant impact of rare genetic variants on splicing disruptions. Similarly, the ClinVar Splicing dataset, compiled from ClinVar, encompasses all benign sequences and pathogenic variants pertinent to splicing.

 

For the ClinVar CM and ARM datasets, we translate the DNA sequences into protein sequences using the human genome assembly hg38 from https://www.ncbi.nlm.nih.gov/grc/human. We employed the GFF file, MANE.GRCh38.v1.1.ensembl\_genomic.gff.gz from https://www.ncbi.nlm.nih.gov/refseq/MANE, to annotate coding versus non-coding regions for each gene, as only coding DNA sequences are translated into proteins. Additionally, protein domains, cataloged in the Pfam database (Finn et al.), are essential for the functional characterization of proteins. These domains are identified by aligning the translated sequences to known domain structures, thereby facilitating deeper insights into protein function.
DOI: 10.5281/zenodo.12116074
title: DYNA: Disease-Specific Language Model for Variant Pathogenicity

description: For coding variant effect predictions (VEPs), our approach centers on clinical variant sets specifically related to inherited cardiomyopathies (CM) and arrhythmias (ARM). We utilize a pre-compiled dataset comprised of rare missense pathogenic and benign variants, categorized using a cohort-based approach for diseases such as cardiomyopathy and arrhythmias, as detailed in the previous report by Zhang et al. ClinVar CM and ARM datasets include all missense variants in CM and ARM, respectively, are extracted from ClinVar (Landrum et al.). In the realm of non-coding VEPs, our focus shifts to splicing-related variants, utilizing a dataset from the multiplexed assay for exon recognition by Chong et al., which highlights the significant impact of rare genetic variants on splicing disruptions. Similarly, the ClinVar Splicing dataset, compiled from ClinVar, encompasses all benign sequences and pathogenic variants pertinent to splicing.

 

For the ClinVar CM and ARM datasets, we translate the DNA sequences into protein sequences using the human genome assembly hg38 from https://www.ncbi.nlm.nih.gov/grc/human. We employed the GFF file, MANE.GRCh38.v1.1.ensembl\_genomic.gff.gz from https://www.ncbi.nlm.nih.gov/refseq/MANE, to annotate coding versus non-coding regions for each gene, as only coding DNA sequences are translated into proteins. Additionally, protein domains, cataloged in the Pfam database (Finn et al.), are essential for the functional characterization of proteins. These domains are identified by aligning the translated sequences to known domain structures, thereby facilitating deeper insights into protein function.
DOI: 10.6084/m9.figshare.26866759
title: <b>Scopus data file for Review of Education for Sustainable Development in East Asia</b>

description: This Excel file is formatted in CSV for analysis in VOSviewer. It contains 1915 articles on ESD in East Asia published through 2023.
DOI: 10.6084/m9.figshare.26866759.v1
title: <b>Scopus data file for Review of Education for Sustainable Development in East Asia</b>

description: This Excel file is formatted in CSV for analysis in VOSviewer. It contains 1915 articles on ESD in East Asia published through 2023.
DOI: 10.15468/dl.2kctct
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.84955 5.95207,-75.25038 5.95207,-75.25038 6.55906,-75.84955 6.55906,-75.84955 5.95207))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Leptodactylidae"
 ]
}

 The dataset includes 76 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106869-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhzxbm
title: Occurrence Download

description: A dataset listing the 658 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-3.722 40.445,-3.7 40.445,-3.7 40.471,-3.722 40.471,-3.722 40.445))",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset's 658 records were derived from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106823-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9qaepm
title: Occurrence Download

description: A dataset containing 243379 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2024-08-03",
 "EventDate is less than or equal to 2024-09-02",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 243379 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106742-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34943/14d21fcb-8dc3-4fb0-be96-421651f53c28
title: Folger Deep Conductivity Temperature Depth Deployed 2015-09-11

description: The Sea-Bird SeaCAT SBE19plus V2 7026 was deployed on 2015-09-11 at Folger Deep. Folger Deep is a deep location in Folger Passage near a pillar-like seamount, where productivity and marine mammals are observed. This device is a Conductivity Temperature Depth. Conductivity Temperature Depth (CTD) is an instrument package that contains sensors for measuring the conductivity, temperature, and pressure of seawater. Salinity, sound velocity, depth and density are variables that can be derived from sensor measurements. CTDs can carry additional instruments and sensors such as oxygen sensors, turbidity sensors and fluorometers. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.15468/dl.5ckswx
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "License is CC-BY-NC 4.0",
 "TaxonKey is Adansonia rubrostipa Jum. & Perrier"
 ]
}

 The dataset includes 230 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106870-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34943/8cf212f9-abab-4012-ac36-80bdf72218e6
title: Barkley Canyon Mid-East Conductivity Temperature Depth Deployed 2018-08-01

description: The Sea-Bird SeaCAT SBE19plus V2 7026 was deployed on 2018-08-01 at Barkley Canyon Mid-East. Barkley Canyon Mid-East is a location in Barkley Canyon near a canyon wall. At this location, benthic processes, biodiversity, and sediment dynamics are observed. This device is a Conductivity Temperature Depth. Conductivity Temperature Depth (CTD) is an instrument package that contains sensors for measuring the conductivity, temperature, and pressure of seawater. Salinity, sound velocity, depth and density are variables that can be derived from sensor measurements. CTDs can carry additional instruments and sensors such as oxygen sensors, turbidity sensors and fluorometers. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/8b3d6b72-2fbf-440c-b0cb-492df300b1f9
title: Bullseye Conductivity Temperature Depth Deployed 2015-09-14

description: The Sea-Bird SeaCAT SBE19plus V2 7033 was deployed on 2015-09-14 at Bullseye. Bullseye is a location at Clayoquot Slope, where gas hydrates, seafloor cold seeps, and hydrate dynamics are observed. This device is a Conductivity Temperature Depth. Conductivity Temperature Depth (CTD) is an instrument package that contains sensors for measuring the conductivity, temperature, and pressure of seawater. Salinity, sound velocity, depth and density are variables that can be derived from sensor measurements. CTDs can carry additional instruments and sensors such as oxygen sensors, turbidity sensors and fluorometers. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/e4166edb-4ce0-4b57-9856-acf4198fad53
title: Bullseye Conductivity Temperature Depth Deployed 2016-06-24

description: The Sea-Bird SeaCAT SBE19plus V2 7033 was deployed on 2016-06-24 at Bullseye. Bullseye is a location at Clayoquot Slope, where gas hydrates, seafloor cold seeps, and hydrate dynamics are observed. This device is a Conductivity Temperature Depth. Conductivity Temperature Depth (CTD) is an instrument package that contains sensors for measuring the conductivity, temperature, and pressure of seawater. Salinity, sound velocity, depth and density are variables that can be derived from sensor measurements. CTDs can carry additional instruments and sensors such as oxygen sensors, turbidity sensors and fluorometers. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/d123e437-f06f-48f6-87a0-121a938ef792
title: Bullseye Conductivity Temperature Depth Deployed 2017-06-10

description: The Sea-Bird SeaCAT SBE19plus V2 7033 was deployed on 2017-06-10 at Bullseye. Bullseye is a location at Clayoquot Slope, where gas hydrates, seafloor cold seeps, and hydrate dynamics are observed. This device is a Conductivity Temperature Depth. Conductivity Temperature Depth (CTD) is an instrument package that contains sensors for measuring the conductivity, temperature, and pressure of seawater. Salinity, sound velocity, depth and density are variables that can be derived from sensor measurements. CTDs can carry additional instruments and sensors such as oxygen sensors, turbidity sensors and fluorometers. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/18d24aaa-900d-494f-9f00-0ef3c66a51f6
title: Odysseus Conductivity Temperature Depth Deployed 2019-05-07

description: The Sea-Bird SeaCAT SBE19plus V2 7033 was deployed on 2019-05-07 on Odysseus. This Remotely Operated Vehicle is owned by Pelagic Research Services. This device is a Conductivity Temperature Depth. Conductivity Temperature Depth (CTD) is an instrument package that contains sensors for measuring the conductivity, temperature, and pressure of seawater. Salinity, sound velocity, depth and density are variables that can be derived from sensor measurements. CTDs can carry additional instruments and sensors such as oxygen sensors, turbidity sensors and fluorometers. It was deployed on a mobile platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/1d59af7d-4d70-4279-9a05-fa192148aff3
title: Barkley Canyon Hydrates Conductivity Temperature Depth Deployed 2015-09-16

description: The Sea-Bird SeaCAT SBE19plus V2 7027 was deployed on 2015-09-16 at Barkley Canyon Hydrates. Barkley Canyon Hydrates denotes a gas hydrate field within Barkley Canyon. This device is a Conductivity Temperature Depth. Conductivity Temperature Depth (CTD) is an instrument package that contains sensors for measuring the conductivity, temperature, and pressure of seawater. Salinity, sound velocity, depth and density are variables that can be derived from sensor measurements. CTDs can carry additional instruments and sensors such as oxygen sensors, turbidity sensors and fluorometers. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/824e9f62-718d-45e0-81db-650952f35fb5
title: Barkley Canyon Conductivity Temperature Depth Deployed 2018-06-22

description: The Sea-Bird SeaCAT SBE19plus V2 7027 was deployed on 2018-06-22 at Barkley Canyon. Barkley Canyon is a submarine canyon located on the continental shelf and slope break. Features include exposed gas hydrates and their associated ecosystems. Accumulation and movement of sediment, upwelling, and plankton blooms are studied in this area. This device is a Conductivity Temperature Depth. Conductivity Temperature Depth (CTD) is an instrument package that contains sensors for measuring the conductivity, temperature, and pressure of seawater. Salinity, sound velocity, depth and density are variables that can be derived from sensor measurements. CTDs can carry additional instruments and sensors such as oxygen sensors, turbidity sensors and fluorometers. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/ab71aead-4033-471d-8bca-0e0eb29a51b1
title: Barkley Canyon Axis Conductivity Temperature Depth Deployed 2021-03-27

description: The Sea-Bird SeaCAT SBE19plus V2 7027 was deployed on 2021-03-27 at Barkley Canyon Axis. Barkley Canyon Axis is located within Barkley Canyon, where benthic processes, biodiversity, sediment dynamics are observed. This device is a Conductivity Temperature Depth. Conductivity Temperature Depth (CTD) is an instrument package that contains sensors for measuring the conductivity, temperature, and pressure of seawater. Salinity, sound velocity, depth and density are variables that can be derived from sensor measurements. CTDs can carry additional instruments and sensors such as oxygen sensors, turbidity sensors and fluorometers. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/ad06d4c6-5ec1-49fa-98b6-7c77637e5dd6
title: Barkley Canyon Axis Conductivity Temperature Depth Deployed 2021-08-21

description: The Sea-Bird SeaCAT SBE19plus V2 7027 was deployed on 2021-08-21 at Barkley Canyon Axis. Barkley Canyon Axis is located within Barkley Canyon, where benthic processes, biodiversity, sediment dynamics are observed. This device is a Conductivity Temperature Depth. Conductivity Temperature Depth (CTD) is an instrument package that contains sensors for measuring the conductivity, temperature, and pressure of seawater. Salinity, sound velocity, depth and density are variables that can be derived from sensor measurements. CTDs can carry additional instruments and sensors such as oxygen sensors, turbidity sensors and fluorometers. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/cbb587ae-454d-41af-922a-d2c6f5020708
title: Barkley Canyon Axis Conductivity Temperature Depth Deployed 2015-09-17

description: The Sea-Bird SeaCAT SBE19plus V2 7031 was deployed on 2015-09-17 at Barkley Canyon Axis. Barkley Canyon Axis is located within Barkley Canyon, where benthic processes, biodiversity, sediment dynamics are observed. This device is a Conductivity Temperature Depth. Conductivity Temperature Depth (CTD) is an instrument package that contains sensors for measuring the conductivity, temperature, and pressure of seawater. Salinity, sound velocity, depth and density are variables that can be derived from sensor measurements. CTDs can carry additional instruments and sensors such as oxygen sensors, turbidity sensors and fluorometers. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/71541191-5f82-4ffb-a521-f3bc262420d5
title: Bullseye Tiltmeter Deployed 2015-09-15

description: The RBR Paroscientific Tilt Meter 01 U1364A was deployed on 2015-09-15 at Bullseye. Bullseye is a location at Clayoquot Slope, where gas hydrates, seafloor cold seeps, and hydrate dynamics are observed. This device is a Tiltmeter. A tiltmeter is a sensitive inclinometer designed to measure very small changes from the vertical level, either on the ground or in structures. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/a276da31-6082-4f4f-97b4-6730ced2bf00
title: Chatham Sound Video Camera Deployed 2016-03-30

description: The Axis M5014 PTZ Dome Network Camera (S/N ACCC8E333B44) was deployed on 2016-03-30 at Chatham Sound. Chatham Sound is a sound on the North Coast of British Columbia, located between Dundas and Stephens Islands and the Tsimpsean Peninsula near Prince Rupert. This device is a Video Camera. Video cameras record video of characteristics of the surrounding environments and can be deployed on fixed and mobile platforms. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/c62b628d-6737-4a5c-8e7e-c11e3b664d54
title: Chatham Sound Video Camera Deployed 2017-04-07

description: The Axis M5014 PTZ Dome Network Camera (S/N ACCC8E333B44) was deployed on 2017-04-07 at Chatham Sound. Chatham Sound is a sound on the North Coast of British Columbia, located between Dundas and Stephens Islands and the Tsimpsean Peninsula near Prince Rupert. This device is a Video Camera. Video cameras record video of characteristics of the surrounding environments and can be deployed on fixed and mobile platforms. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/d673e74e-585f-4c4c-afe9-a030bdc3aa0e
title: Douglas Channel Video Camera Deployed 2017-04-06

description: The Axis M5014 PTZ Dome Network Camera (S/N ACCC8E333BB3) was deployed on 2017-04-06 at Douglas Channel. Douglas Channel is one of the principal inlets of the British Columbia coast. This device is a Video Camera. Video cameras record video of characteristics of the surrounding environments and can be deployed on fixed and mobile platforms. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/c3862226-5e7e-4db2-8547-a76dde2c9339
title: Discovery Passage Video Camera Deployed 2016-03-18

description: The Axis M5014 PTZ Dome Network Camera (S/N ACCC8E333BB2) was deployed on 2016-03-18 at Discovery Passage. Discovery Passage is a channel that is part of Inside Passage. It is located between Vancouver Island and the Discovery Islands and north of the Georgia Strait. This device is a Video Camera. Video cameras record video of characteristics of the surrounding environments and can be deployed on fixed and mobile platforms. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.