cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7559039
title: Additional file 1: of Identification of a metabolomic signature associated with feed efficiency in beef cattle

description: Experiment information of animals including group, birth, days of life at before feedlot (− 21 days), father, residual feed intake and residual feed intake adjusted by age as a covariate. The FE groups had different ages (P
DOI: 10.6084/m9.figshare.7559039.v1
title: Additional file 1: of Identification of a metabolomic signature associated with feed efficiency in beef cattle

description: Experiment information of animals including group, birth, days of life at before feedlot (− 21 days), father, residual feed intake and residual feed intake adjusted by age as a covariate. The FE groups had different ages (P
DOI: 10.7284/131975
title: Winch data collected during research cruise HLY1601 using a InterOcean 71217 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123817
title: Expendable Probe data collected during research cruise HLY1602 using a Sippican MK21 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123837
title: Gravimeter data collected during research cruise HLY1602 using a Bell BGM-3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7559012
title: Additional file 2: of Does written informed consent adequately inform surgical patients? A cross sectional study

description: Consent Data base. (XLS 164 kb)
DOI: 10.7284/123836
title: INS (Inertial Navigation System) data collected during research cruise HLY1602 using a Kongsberg Seapath 330+ instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7559012.v1
title: Additional file 2: of Does written informed consent adequately inform surgical patients? A cross sectional study

description: Consent Data base. (XLS 164 kb)
DOI: 10.7284/123902
title: INS (Inertial Navigation System) data collected during research cruise HLY1602 using a Applanix POS/MV-320 V5 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123818
title: Multibeam Echosounder data collected during research cruise HLY1602 using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123845
title: Multibeam Echosounder data collected during research cruise HLY1602 using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123819
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise HLY1602 using a LDEO pCO2 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7558970
title: Additional file 1: of Unbiased data mining identifies cell cycle transcripts that predict non-indolent Gleason score 7 prostate cancer

description: An excel file containing 8 spreadsheets: Table S1. (transcripts identified in Step 1 using CRN), Table S2. (transcripts identified in Step 2 using cBioPortal), Table S3. (univariate logistic regression and ROC-AUC analyses in patients with Gleason score 6–10 tumours), Table S4. (multivariable logistic regression analysis for predicting BCR in patients with Gleason score 3 + 4 = 7 using pairs of one upregulated and one downregulated transcript), Table S5. (univariate logistic regression and ROC-AUC analyses in patients with Gleason score 6 tumours), Table S6. (univariate logistic regression and ROC-AUC analyses in patients with Gleason score 4 + 3 = 7 tumours), Table S7. (mean transcript abundance in patients with BCR and without BCR, broken down by Gleason score), and Table S8. (description of the 12 transcripts that predicted BCR in the validation dataset. Includes citations for other studies that found these transcripts to be prognostic for PCa outcome). (XLSX 189 kb)
DOI: 10.6084/m9.figshare.7558964
title: Additional file 2: of Phagocytosis of Leptospira by leukocytes from mice with different susceptibility to leptospirosis and possible role of chemokines

description: Table S1. Protein interaction network analysed by String database. (XLSX 35 kb)
DOI: 10.25345/c50n2t
title: MassIVE MSV000086034 - Metal DS vs Swab study OU July 23, 2020
title: chemical recovery swab vs. direct solvent samples
DOI: 10.6084/m9.figshare.7558961
title: Additional file 1: of Phagocytosis of Leptospira by leukocytes from mice with different susceptibility to leptospirosis and possible role of chemokines

description: Table S2. Protein interactions network analysed by GeneCard-GPSProt interaction database. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7558964.v1
title: Additional file 2: of Phagocytosis of Leptospira by leukocytes from mice with different susceptibility to leptospirosis and possible role of chemokines

description: Table S1. Protein interaction network analysed by String database. (XLSX 35 kb)
DOI: 10.7284/123820
title: Singlebeam Echosounder data collected during research cruise HLY1602 using a Knudsen 3260 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7558961.v1
title: Additional file 1: of Phagocytosis of Leptospira by leukocytes from mice with different susceptibility to leptospirosis and possible role of chemokines

description: Table S2. Protein interactions network analysed by GeneCard-GPSProt interaction database. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7558970.v1
title: Additional file 1: of Unbiased data mining identifies cell cycle transcripts that predict non-indolent Gleason score 7 prostate cancer

description: An excel file containing 8 spreadsheets: Table S1. (transcripts identified in Step 1 using CRN), Table S2. (transcripts identified in Step 2 using cBioPortal), Table S3. (univariate logistic regression and ROC-AUC analyses in patients with Gleason score 6–10 tumours), Table S4. (multivariable logistic regression analysis for predicting BCR in patients with Gleason score 3 + 4 = 7 using pairs of one upregulated and one downregulated transcript), Table S5. (univariate logistic regression and ROC-AUC analyses in patients with Gleason score 6 tumours), Table S6. (univariate logistic regression and ROC-AUC analyses in patients with Gleason score 4 + 3 = 7 tumours), Table S7. (mean transcript abundance in patients with BCR and without BCR, broken down by Gleason score), and Table S8. (description of the 12 transcripts that predicted BCR in the validation dataset. Includes citations for other studies that found these transcripts to be prognostic for PCa outcome). (XLSX 189 kb)
DOI: 10.7284/123826
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HLY1603 using a Hawaii UHDAS instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123839
title: Gravimeter data collected during research cruise HLY1603 using a Bell BGM-3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123838
title: INS (Inertial Navigation System) data collected during research cruise HLY1603 using a Kongsberg Seapath 330+ instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123903
title: INS (Inertial Navigation System) data collected during research cruise HLY1603 using a Applanix POS/MV-320 V5 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123823
title: Multibeam Echosounder data collected during research cruise HLY1603 using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123846
title: Multibeam Echosounder data collected during research cruise HLY1603 using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7558904
title: Insight into late-Iapetus tectonics from new U–Pb zircon and micropalaeontological data from the Navan area, eastern Ireland

description: Navan zircon U–Pb geochronology and geochemistry data.
DOI: 10.6084/m9.figshare.7558904.v1
title: Insight into late-Iapetus tectonics from new U–Pb zircon and micropalaeontological data from the Navan area, eastern Ireland

description: Navan zircon U–Pb geochronology and geochemistry data.
DOI: 10.7284/123824
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise HLY1603 using a LDEO pCO2 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123825
title: Singlebeam Echosounder data collected during research cruise HLY1603 using a Knudsen 3260 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123849
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HLY16TA using a Hawaii UHDAS instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123850
title: INS (Inertial Navigation System) data collected during research cruise HLY16TA using a Kongsberg Seapath 330+ instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123898
title: INS (Inertial Navigation System) data collected during research cruise HLY16TA using a Applanix POS/MV-320 V5 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123848
title: Multibeam Echosounder data collected during research cruise HLY16TA using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123806
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HLY16TB using a Hawaii UHDAS instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123831
title: Gravimeter data collected during research cruise HLY16TB using a Bell BGM-3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123830
title: INS (Inertial Navigation System) data collected during research cruise HLY16TB using a Kongsberg Seapath 330+ instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7558784
title: Acoustic signals and repertoire complexity in Swallow-tailed Manakins (<i>Chiroxiphia caudata</i>, Aves: Pipridae)

description: Neotropical manakins (Pipridae) are well known for the male’s multimodal courtship displays including acoustic and visual signals. In these birds, acoustic signals are important for attracting females to display arenas, often located at hidden perches within the forest. Here, we describe the acoustic repertoire of Swallow-tailed Manakins (<i>Chiroxiphia caudata</i>), a bird species well known for displaying cooperatively, but for which the acoustic repertoire has not been well-documented. We recorded calls and behaviour of Swallow-tailed Manakins on three display courts in the Atlantic Forest, Brazil. We classified calls to test our repertoire designations using linear discriminant analysis and asked how different sounds mapped onto components of the cooperative display. Prior to the display, males coordinate sounds either in duets, as has been shown in congeners, or in choruses, which we report for the first time in <i>Chiroxiphia</i>. Males also produce three mechanical sounds, so far undescribed in this species, and 11 calls associated with seven behaviours. Particularly prominent was the <i>wah</i> call produced while displaying, which becomes increasingly fast toward the <i>jump display</i>’s end, possibly to stimulate females for copulation. Our study of the Swallow-tailed Manakin acoustic repertoire provides insights into specific signal categories females may assess as they attend male mating displays.
DOI: 10.7284/123899
title: INS (Inertial Navigation System) data collected during research cruise HLY16TB using a Applanix POS/MV-320 V5 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7558748
title: Medical Reasons for Limiting Drinking: Data from a Sexual Health Clinic

description: <i>Background:</i> Heavy drinking poses health risks for individuals with HIV, and some individuals with HIV attempt to reduce drinking. Little is known about whether medical reasons motivate HIV-infected individuals to reduce drinking. <i>Objectives</i>: We evaluated medical reasons for limiting drinking among patients in a sexual health clinic, and explored whether these reasons could be operationalized as a new scale for research and clinical use in sexual health clinics. <i>Methods:</i> A sample of 70 patients in a sexual health clinic who reported efforts to limit drinking in the past month (84% with self-reported HIV; 81% male; 50% Black) completed a nine-item medical reasons for limiting drinking scale on a tablet while waiting for their appointment. Exploratory factor analysis was performed to evaluate psychometric properties of the scale. <i>Results:</i> Patients most commonly endorsed general concerns about health, and concerns about alcohol’s effect on the liver. Support was found for a unidimensional (one-factor) eight-item scale, which evidenced good internal consistency (<i>α</i> = 0.84). Results were identical when analyses were restricted to the subset of 59 individuals who self-reported HIV infection. <i>Conclusions/Importance:</i> This study suggests that individuals in a sexual health clinic most commonly endorse broad nonspecific concerns about drinking and health, as well as concerns about their liver. This study yields an 8-item scale to measure medical reasons for limiting drinking in sexual health clinics and among individuals with HIV. This scale should enhance researchers’ ability to study this important construct and may facilitate discussion of drinking reduction with HIV-infected heavy drinkers, requiring future study.
DOI: 10.6084/m9.figshare.7558784.v1
title: Acoustic signals and repertoire complexity in Swallow-tailed Manakins (<i>Chiroxiphia caudata</i>, Aves: Pipridae)

description: Neotropical manakins (Pipridae) are well known for the male’s multimodal courtship displays including acoustic and visual signals. In these birds, acoustic signals are important for attracting females to display arenas, often located at hidden perches within the forest. Here, we describe the acoustic repertoire of Swallow-tailed Manakins (<i>Chiroxiphia caudata</i>), a bird species well known for displaying cooperatively, but for which the acoustic repertoire has not been well-documented. We recorded calls and behaviour of Swallow-tailed Manakins on three display courts in the Atlantic Forest, Brazil. We classified calls to test our repertoire designations using linear discriminant analysis and asked how different sounds mapped onto components of the cooperative display. Prior to the display, males coordinate sounds either in duets, as has been shown in congeners, or in choruses, which we report for the first time in <i>Chiroxiphia</i>. Males also produce three mechanical sounds, so far undescribed in this species, and 11 calls associated with seven behaviours. Particularly prominent was the <i>wah</i> call produced while displaying, which becomes increasingly fast toward the <i>jump display</i>’s end, possibly to stimulate females for copulation. Our study of the Swallow-tailed Manakin acoustic repertoire provides insights into specific signal categories females may assess as they attend male mating displays.
DOI: 10.6084/m9.figshare.7558748.v1
title: Medical Reasons for Limiting Drinking: Data from a Sexual Health Clinic

description: <i>Background:</i> Heavy drinking poses health risks for individuals with HIV, and some individuals with HIV attempt to reduce drinking. Little is known about whether medical reasons motivate HIV-infected individuals to reduce drinking. <i>Objectives</i>: We evaluated medical reasons for limiting drinking among patients in a sexual health clinic, and explored whether these reasons could be operationalized as a new scale for research and clinical use in sexual health clinics. <i>Methods:</i> A sample of 70 patients in a sexual health clinic who reported efforts to limit drinking in the past month (84% with self-reported HIV; 81% male; 50% Black) completed a nine-item medical reasons for limiting drinking scale on a tablet while waiting for their appointment. Exploratory factor analysis was performed to evaluate psychometric properties of the scale. <i>Results:</i> Patients most commonly endorsed general concerns about health, and concerns about alcohol’s effect on the liver. Support was found for a unidimensional (one-factor) eight-item scale, which evidenced good internal consistency (<i>α</i> = 0.84). Results were identical when analyses were restricted to the subset of 59 individuals who self-reported HIV infection. <i>Conclusions/Importance:</i> This study suggests that individuals in a sexual health clinic most commonly endorse broad nonspecific concerns about drinking and health, as well as concerns about their liver. This study yields an 8-item scale to measure medical reasons for limiting drinking in sexual health clinics and among individuals with HIV. This scale should enhance researchers’ ability to study this important construct and may facilitate discussion of drinking reduction with HIV-infected heavy drinkers, requiring future study.
DOI: 10.7284/123804
title: Multibeam Echosounder data collected during research cruise HLY16TB using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123842
title: Multibeam Echosounder data collected during research cruise HLY16TB using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7558694
title: hub.txt

description: https://genome.cshlp.org/content/27/2/259.full
DOI: 10.6084/m9.figshare.7558700
title: Supplemental material for Giri et al 2019 "The Neurospora crassa standard Oak Ridge background exhibits atypically efficient meiotic silencing by unpaired DNA".

description: Revised MS Table S6 presents round ascospore fractions from lid harvests of crosses heterozygous or homozygous for an <i>::r1</i> transgene.Revised MS Table S5 presents round ascospores from lid harvests of crosses heterozygous or homozygous for an <i>::r3</i> transgene.Revised MS Table S4 presents round ascospore fractions from crosses heterozygous or homozygous for an <i>::r1</i> transgene.Revised MS Table S3 presents the genome sequencing statistics for strains NC1-NC13, NC7BS and NC8BSRevised MS Table S2 lists the oligonucleotide primers used in this study.Revised MS Table S1 lists the Neurospora strains used in this study.Giri et al 2019 Figure S1 presents a schematic figure describing the derivation of the <i>Sad-2<sup>Nt</sup> </i>strains. Giri et al 2019 Legend to Figure S1 is the figure legend for Figure S1.<br>
DOI: 10.6084/m9.figshare.7558691
title: genomes.txt

description: https://genome.cshlp.org/content/27/2/259.full
DOI: 10.6084/m9.figshare.7558694.v2
title: hub.txt

description: https://genome.cshlp.org/content/27/2/259.full
DOI: 10.7284/123810
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HLY16TC using a Hawaii UHDAS instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7558694.v1
title: hub.txt

description: https://genome.cshlp.org/content/27/2/259.full
DOI: 10.6084/m9.figshare.7558691.v2
title: genomes.txt

description: https://genome.cshlp.org/content/27/2/259.full
DOI: 10.7284/123833
title: Gravimeter data collected during research cruise HLY16TC using a Bell BGM-3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7558691.v1
title: genomes.txt

description: https://genome.cshlp.org/content/27/2/259.full
DOI: 10.17028/rd.lboro.7558676
title: Weave as a method of sandal design: Focus group transcript

description: The data consists of a transcript of a focus group conducted with 5 footwear design professionals. The aim was to validate findings from practice-based PhD research that investigated the potential for a woven textile approach to footwear design. It also aimed to provide feedback on the use of designed artefacts to disseminate research findings to a non-academic audience.
DOI: 10.7284/123832
title: INS (Inertial Navigation System) data collected during research cruise HLY16TC using a Kongsberg Seapath 330+ instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17028/rd.lboro.7558676.v1
title: Weave as a method of sandal design: Focus group transcript

description: The data consists of a transcript of a focus group conducted with 5 footwear design professionals. The aim was to validate findings from practice-based PhD research that investigated the potential for a woven textile approach to footwear design. It also aimed to provide feedback on the use of designed artefacts to disseminate research findings to a non-academic audience.
DOI: 10.6084/m9.figshare.7558673
title: trackDb.txt

description: https://genome.cshlp.org/content/27/2/259.full
DOI: 10.7284/123900
title: INS (Inertial Navigation System) data collected during research cruise HLY16TC using a Applanix POS/MV-320 V5 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7558673.v2
title: trackDb.txt

description: https://genome.cshlp.org/content/27/2/259.full
DOI: 10.7284/123807
title: Multibeam Echosounder data collected during research cruise HLY16TC using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7558673.v1
title: trackDb.txt

description: https://genome.cshlp.org/content/27/2/259.full
DOI: 10.17028/rd.lboro.7558652
title: Footwear design process interview transcripts

description: The data consists of four interview transcripts conducted with professional footwear designers working for two global brands. The data provides insights into emerging digital design processes, conventional footwear design approaches and feedback on a woven textile design approach.
DOI: 10.7284/123843
title: Multibeam Echosounder data collected during research cruise HLY16TC using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition