cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7958013
title: A genomic timescale for placental mammal evolution: Datasets

description: Datasets used in Foley N.M., Mason, V.C., Harris A.J., Bredemeyer K.R., Damas J., Lewin H.A., Eizirik E., Gatesy J., Zoonomia Consortium, Springer M.S., and W.J. Murphy (2022) A genomic timescale for placental mammal evolution. <strong><em>Science</em></strong>. x:x-x This repository includes - Alignments for whole genome analyses - Alignments for sliding windows analyses across chromosome 1, chromosome 21, chromosome 22 and the X chromosome - Sliding window alignments used to estimate divergence times - Preliminary topologies derived from the low recombining region on the X chromosome - Machine readable (.csv) versions of tables presented in the paper - Per chromosome fasta files referenced to the human genome exported from the HAL alignment as described in the paper. ~~~~~~~~~~~~~~ v1.1 added nexus topologies for datasets listed in Table S2
DOI: 10.5517/ccdc.csd.cc2brwdd
title: CCDC 2167904: Experimental Crystal Structure Determination

description: Related Article: Benita Barton, Danica B. Trollip, Eric C. Hosten|2023|CrystEngComm|25|3013|doi:10.1039/D3CE00174A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f2p7g
title: CCDC 2236905: Experimental Crystal Structure Determination

description: Related Article: Peter Deglmann, Sara Machleit, Cesare Gallizioli, Susanne M. Rupf, Alex J. Plajer|2023|Cat.Sci.Tech.|13|2937|doi:10.1039/D3CY00301A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f2p8h
title: CCDC 2236906: Experimental Crystal Structure Determination

description: Related Article: Peter Deglmann, Sara Machleit, Cesare Gallizioli, Susanne M. Rupf, Alex J. Plajer|2023|Cat.Sci.Tech.|13|2937|doi:10.1039/D3CY00301A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f7gw1
title: CCDC 2241513: Experimental Crystal Structure Determination

description: Related Article: Benita Barton, Danica B. Trollip, Eric C. Hosten|2023|CrystEngComm|25|3013|doi:10.1039/D3CE00174A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f8v3p
title: CCDC 2242822: Experimental Crystal Structure Determination

description: Related Article: Benita Barton, Danica B. Trollip, Eric C. Hosten|2023|CrystEngComm|25|3013|doi:10.1039/D3CE00174A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3886/e162321v1-139090
title: Hyperbolic modeling of hypothetical health behavior during a viral outbreak

description: Unprocessed Qualtrics outputs from MTurk surveys conducted on decision-making during a hypothetical viral outbreak and other delay and discounting questions. IP addresses and geolocation have been removed. A csv that ends with "v1" or "v2" indicate changes in wording to the viral scenario to improve clarity.
DOI: 10.6084/m9.figshare.21641300.v10
title: Young Hoon Soong & Chung, E-S. Monthly potential evapotranspiration metadata download link and python code. Figshare

description: Regridding Global CMIP6 GCMs datasets(0.5 degree) <br> <br>
DOI: 10.34740/kaggle/dsv/5744954
title: Cristiano Ronaldo | All Club Goals
DOI: 10.25402/fsg.23060297
title: Identification of host factors that bind to the 5? end of the MERS-CoV RNA genome: supplementary data

description: Aim: The aim of this study was to identify host factors that interact with the 5? end of the MERS-CoV RNA genome. Materials & methods: RNA affinity chromatography followed by mass spectrometry analysis was used to identify the binding of host factors in Vero E6 cells. Results: A total of 59 host factors that bound the MERS-CoV RNA genome in non-infected Vero E6 cells were identified. Most of the identified cellular proteins were previously reported to interact with the genome of other RNA viruses.We validated our mass spectrometry results using western blotting. Conclusion: These data enhance our knowledge about the RNA–host interactions of coronaviruses, which could serve as targets for developing antiviral therapeutics against MERS-CoV.
DOI: 10.25402/fsg.23060297.v1
title: Identification of host factors that bind to the 5? end of the MERS-CoV RNA genome: supplementary data

description: Aim: The aim of this study was to identify host factors that interact with the 5? end of the MERS-CoV RNA genome. Materials & methods: RNA affinity chromatography followed by mass spectrometry analysis was used to identify the binding of host factors in Vero E6 cells. Results: A total of 59 host factors that bound the MERS-CoV RNA genome in non-infected Vero E6 cells were identified. Most of the identified cellular proteins were previously reported to interact with the genome of other RNA viruses.We validated our mass spectrometry results using western blotting. Conclusion: These data enhance our knowledge about the RNA–host interactions of coronaviruses, which could serve as targets for developing antiviral therapeutics against MERS-CoV.
DOI: 10.48420/21725366
title: Privacy-Preserving Local Energy Markets: A Systematic Literature Review Data Extraction Table

description: This document contains data extracted from 61 peer-reviewed papers about privacy-preserving solutions for the local energy market in its different forms, including peer-to-peer markets, collective self-consumption, and transactive energy markets. The papers were collected from IEEE, ACM, Science Direct, MDPI, and Web of Science databases and were identified through a systematic literature search. The data extraction was performed by one author for each paper. After completion, all extracted data were checked for inconsistencies by the participating authors.
DOI: 10.48420/21725366.v1
title: Privacy-Preserving Local Energy Markets: A Systematic Literature Review Data Extraction Table

description: This document contains data extracted from 61 peer-reviewed papers about privacy-preserving solutions for the local energy market in its different forms, including peer-to-peer markets, collective self-consumption, and transactive energy markets. The papers were collected from IEEE, ACM, Science Direct, MDPI, and Web of Science databases and were identified through a systematic literature search. The data extraction was performed by one author for each paper. After completion, all extracted data were checked for inconsistencies by the participating authors.
DOI: 10.5281/zenodo.7808418
title: Imaging the footprint of nanoscale electrochemical reactions for assessing synergistic hydrogen evolution

description: Dataset complementary to supporting information, such as optical movies, COMSOL model, and Python codes to analyze the experimental and simulated data according to the manuscript submitted for publication.<br> The movies correspond to cyclic voltammetry operando monitoring by optical microscopy of the reduction of water + KCl in the presence of NiCl2 at an ITO electrode or NiCl2 or MgCl2 at ITO electrode coated with Pt nanoparticles. The python function was used to extract the halo size around each nanoparticle from optical images, the python routines were used to postprocess the COMSOL simulation and evalaute the simulated halo size.
DOI: 10.5281/zenodo.7808419
title: Imaging the footprint of nanoscale electrochemical reactions for assessing synergistic hydrogen evolution

description: Dataset complementary to supporting information, such as optical movies, and Python codes to analyze the data according to the manuscript submitted for publication.<br> The movies correspond to cyclic voltammetry operando monitoring by optical microscopy of the reduction of water + KCl in the presence of NiCl2 at an ITO electrode or NiCl2 or MgCl2 at ITO electrode coated with Pt nanoparticles.
DOI: 10.5281/zenodo.7948233
title: Imaging the footprint of nanoscale electrochemical reactions for assessing synergistic hydrogen evolution

description: Dataset complementary to supporting information, such as optical movies, COMSOL model, and Python codes to analyze the experimental and simulated data according to the manuscript submitted for publication.<br> The movies correspond to cyclic voltammetry operando monitoring by optical microscopy of the reduction of water + KCl in the presence of NiCl2 at an ITO electrode or NiCl2 or MgCl2 at ITO electrode coated with Pt nanoparticles. The python function was used to extract the halo size around each nanoparticle from optical images, the python routines were used to postprocess the COMSOL simulation and evalaute the simulated halo size.
DOI: 10.6084/m9.figshare.21641300
title: Young Hoon Soong & Chung, E-S. Monthly potential evapotranspiration metadata download link and python code. Figshare

description: Regridding Global CMIP6 GCMs datasets(0.5 degree) <br> <br> If you want to use the PET code, please get in touch with us by e-mail below. Also, please refer to our scientific data paper for those who have obtained the code. The paper is under review. DOI: eschung@seoultech.ac.kr thddudgns200@naver.com
DOI: 10.6084/m9.figshare.21641300.v11
title: Young Hoon Soong & Chung, E-S. Monthly potential evapotranspiration metadata download link and python code. Figshare

description: Regridding Global CMIP6 GCMs datasets(0.5 degree) <br> <br> If you want to use the PET code, please get in touch with us by e-mail below. Furthermore, please refer to our paper for users who have obtained the code. <br> eschung@seoultech.ac.kr thddudgns200@naver.com
DOI: 10.21227/rnvb-6f83
title: Dataset for A Systematic Methodology to Compute the Quantum Vulnerability Factors for Quantum Circuits

description: Quantum computing is one of the most promising technology advances of the latest years. Once only a conceptual idea to solve physics simulations, quantum computation is today a reality, with numerous machines able to execute quantum algorithms. One of the hardest challenges in quantum computing is reliability. Qubits are highly sensitive to noise, which can make the output useless. Moreover, lately it has been shown that superconducting qubits are extremely susceptible to external sources of faults, such as ionizing radiation. When adopted in large scale, radiation-induced errors are expected to become a serious challenge for qubits reliability. In this paper, we propose an evaluation of the impact of transient faults in the execution of quantum circuits. Inspired by the Architectural and Program Vulnerability Factors, widely adopted to characterize the reliability of classical computing architectures and algorithms, we propose the Quantum Vulnerability Factor (QVF) as a metric to measure the impact that the corruption of a qubit has on the circuit output probability distribution. First, we model faults based on the latest studies on real machines and recently performed radiation experiments. Then, we design a quantum fault injector, built over Qiskit, and characterize the propagation of faults in quantum circuits. We report the finding of more than 15,000,000 fault injections, evaluating the reliability of three quantum circuits and identifying the faults and qubits that are more likely than others to impact the output. With our results, we give guidelines on how to map the qubits in the real quantum computer to reduce the output error and to reduce the probability of having a radiation-induced corruption to modify the output. Finally, we compare the simulation results with experiments on physical quantum computers.
DOI: 10.26025/1912/66193
title: Bottlenose dolphin mothers modify signature whistles in the presence of their own calves

description: Human caregivers interacting with children typically modify their speech in ways that promote attention, bonding and language acquisition. Although this “motherese,” or child-directed communication (CDC), occurs in a variety of human cultures, evidence among non-human species is very rare. We looked for its occurrence in a non-human mammalian species with long-term mother-offspring bonds that is capable of vocal production learning, the bottlenose dolphin (Tursiops truncatus). Dolphin signature whistles provide a unique opportunity to test for CDC in non-human animals, because we are able to quantify changes in the same vocalizations produced in the presence or absence of calves. We analyzed recordings made during brief catch-and-release events of wild bottlenose dolphins in waters near Sarasota Bay, Florida, USA, and found that females produced signature whistles with significantly higher maximum frequencies and wider frequency ranges when they were recorded with their own dependent calves vs. not with them. These differences align with the higher fundamental frequencies and wider pitch ranges seen in human CDC. Our results provide the first evidence in a non-human mammal for changes in the same vocalizations when produced in the presence vs. absence of offspring, and thus strongly support convergent evolution of motherese, or child-directed communication, in bottlenose dolphins. CDC may function to enhance attention, bonding and vocal learning in dolphin calves, as it does in human children. Our data add to the growing body of evidence that dolphins provide a powerful animal model for studying the evolution of vocal learning and language.
DOI: 10.25345/c5m61c07g
title: MassIVE MSV000092002 - DIA-PTCR dataset for "Exposing the molecular heterogeneity of glycosylated biotherapeutics"
title: Raw DIA-PTCR data files for manuscript "Exposing the molecular heterogeneity of glycosylated biotherapeutics"
DOI: 10.48531/jbru.calmip/54sow9
title: Dataset for Modelling the long-term carbon storage potential from recalcitrant matter inputs in tropical arable croplands

description: Output results from RothC-Bioeconomy applied to Ecuadorian croplands
DOI: 10.5281/zenodo.7958069
title: Habitat differences influence genetic impacts of human land use on the American beech (Fagus grandifolia)

description: Natural reforestation after regional forest clearance is a globally common land-use sequence. The genetic recovery of tree populations in these recolonized forests may depend on the biogeographic setting of the landscape, for instance whether they are in the core or in the marginal part of the species' range. Using data from 501 individuals genotyped across 7 microsatellites, we investigated whether regional differences in habitat quality affected the recovery of genetic variation in a wind-pollinated tree species, American beech (Fagus grandifolia) in Massachusetts. We compared populations in forests that were recolonized following agricultural abandonment to those in remnant forests that have only been logged in both central inland and marginal coastal regions. Across all populations in our entire study region, recolonized forests showed limited reduction of genetic diversity as only observed heterozygosity was significantly reduced in these forests (H O = 0.520 and 0.590, respectively). Within inland region, this pattern was observed, whereas in the coast, recolonized populations exhibited no reduction in all genetic diversity estimates. However, genetic differentiation among recolonized populations in marginal coastal habitat increased (F st logged = 0.072; F st secondary = 0.249), with populations showing strong genetic structure, in contrast to inland region. These results indicate that the magnitude of recovery of genetic variation in recolonized populations can vary at different habitats.
DOI: 10.5281/zenodo.7958068
title: Habitat differences influence genetic impacts of human land use on the American beech (Fagus grandifolia)

description: Natural reforestation after regional forest clearance is a globally common land-use sequence. The genetic recovery of tree populations in these recolonized forests may depend on the biogeographic setting of the landscape, for instance whether they are in the core or in the marginal part of the species' range. Using data from 501 individuals genotyped across 7 microsatellites, we investigated whether regional differences in habitat quality affected the recovery of genetic variation in a wind-pollinated tree species, American beech (Fagus grandifolia) in Massachusetts. We compared populations in forests that were recolonized following agricultural abandonment to those in remnant forests that have only been logged in both central inland and marginal coastal regions. Across all populations in our entire study region, recolonized forests showed limited reduction of genetic diversity as only observed heterozygosity was significantly reduced in these forests (H O = 0.520 and 0.590, respectively). Within inland region, this pattern was observed, whereas in the coast, recolonized populations exhibited no reduction in all genetic diversity estimates. However, genetic differentiation among recolonized populations in marginal coastal habitat increased (F st logged = 0.072; F st secondary = 0.249), with populations showing strong genetic structure, in contrast to inland region. These results indicate that the magnitude of recovery of genetic variation in recolonized populations can vary at different habitats.
DOI: 10.5517/ccdc.csd.cc2c6vk0
title: CCDC 2181332: Experimental Crystal Structure Determination

description: Related Article: Qiang Wen, Naveen Malik, Yoseph Addadi, Maren Weißenfels, Vivek Singh, Linda J. W. Shimon, Michal Lahav, Milko E. Boom|2023|Angew.Chem.,Int.Ed.|62|e202214041|doi:10.1002/anie.202214041
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c7rcr
title: CCDC 2182194: Experimental Crystal Structure Determination

description: Related Article: Noufal Merukan Chola, Rajaram K Nagarale|2022|Batteries Supercaps|5|e202200221|doi:10.1002/batt.202200221
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c8w5q
title: CCDC 2183273: Experimental Crystal Structure Determination

description: Related Article: Xueyan Zhao, Dengfeng Chen, Shengzhen Zhu, Jinyue Luo, Saihu Liao, Binnan Zheng, Shenlin Huang|2023|Org.Lett.|25|3109|doi:10.1021/acs.orglett.3c00950
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7958119
title: Local coexistence and genetic isolation of three pollinator species on the same fig tree species

description: Molecular tools increasingly reveal cryptic lineages and species that were previously unnoticed by traditional taxonomy. The discovery of cryptic species in sympatry prompts the question of how they coexist in the apparent absence of ecological divergence. However, this assumes first that the molecular taxonomy used to identify cryptic lineages delimits species boundaries accurately. This issue is important, because many diversity studies rely heavily or solely on data from mitochondrial DNA sequences for species delimitation, and several factors may lead to poor identification of species boundaries. We used a multilocus population genetics approach to show that three mtDNA-defined cryptic lineages of the fig wasp Pleistodontes imperialis Saunders, which pollinate Port Jackson figs (Ficus rubiginosa) in north-eastern Australia, represent reproductively isolated species. These species coexist locally, with about 13% of figs (where mating occurs) containing wasps from two or three species. However, there was no evidence for gene flow between them. Confirmed cases of coexisting cryptic species provide excellent opportunities for future studies of the ecological and evolutionary forces shaping both species coexistence and fig/pollinator coevolution.
DOI: 10.5281/zenodo.7958118
title: Local coexistence and genetic isolation of three pollinator species on the same fig tree species

description: Molecular tools increasingly reveal cryptic lineages and species that were previously unnoticed by traditional taxonomy. The discovery of cryptic species in sympatry prompts the question of how they coexist in the apparent absence of ecological divergence. However, this assumes first that the molecular taxonomy used to identify cryptic lineages delimits species boundaries accurately. This issue is important, because many diversity studies rely heavily or solely on data from mitochondrial DNA sequences for species delimitation, and several factors may lead to poor identification of species boundaries. We used a multilocus population genetics approach to show that three mtDNA-defined cryptic lineages of the fig wasp Pleistodontes imperialis Saunders, which pollinate Port Jackson figs (Ficus rubiginosa) in north-eastern Australia, represent reproductively isolated species. These species coexist locally, with about 13% of figs (where mating occurs) containing wasps from two or three species. However, there was no evidence for gene flow between them. Confirmed cases of coexisting cryptic species provide excellent opportunities for future studies of the ecological and evolutionary forces shaping both species coexistence and fig/pollinator coevolution.
DOI: 10.6084/m9.figshare.23060231
title: Monarch Diet Flight Data

description: Data to accompany <strong>Larval diet impacts flight performance in monarch butterflies from two populations</strong> by (Article DOI: 10.1111/een.13255) by Ali Ebada<sup>1</sup>, Jacobus C. de Roode<sup>1</sup>, Ania A. Majewska<sup>2</sup> <br> Institutional affiliations: 1 Department of Biology, Emory University, Atlanta, GA 30322, USA 2 Department of Physiology and Pharmacology, College of Veterinary Medicine, University of Georgia, Athens, GA 30602, USA <br> Corresponding author: Ania A. Majewska (majewska@uga.edu). <br> <br> Each row represents an individual monarch. Flight metrics are aggregate values for a successful flight.
DOI: 10.34740/kaggle/dsv/5718108
title: CandyBag