cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p9d7m8eh
title: Bringing the South Dakota southern Black Hills Mammoth Site formation and fossil discovery to light: a chronological reassignment using Luminescence Dating

description: The Mammoth Springs (MS) fossil site at Hot Springs, South Dakota, provides a unique opportunity to reconstruct paleoenvironmental conditions. We used luminescence dating on fine sand sized potassium feldspars to establish a chronological framework for the site. In addition, we dated a late Pleistocene paludal proxy site using luminescence and incorporated those results with previous radiocarbon dating. Radiocarbon dating of the MS sinkhole organics suggested that the ages of the sediments that hosted the fossils was ~22-26 ka, while luminescence dating on feldspar grains suggested substantially older ages of ~130-255 ka. Analysis of the equivalent dose dispersion of the luminescence samples showed that the sediments were mostly well bleached prior to deposition. This analysis suggests that eolian and shallow fluvial processes were the dominant transport for sediments into the sinkhole, and that luminescence provides a reliable, more rigorous chronology of the MS fossil site. The luminescence ages (n = 6), show that the fossil-bearing sediments span all of Marine Isotope Stage (MIS) 6 and MIS 7 with the sinkhole drying, cementing, and completely infilling at the start of the MIS 5 at the end of the global penultimate glacial maximum.
DOI: 10.18112/openneuro.ds005027.v1.0.2
title: Michigan Longitudinal Study
DOI: 10.18112/openneuro.ds005012.v1.0.2
title: Adolescent Health Risk Behavior Study
DOI: 10.26030/d09k-4e68
title: Characterization of mouse ocular responses (Microscopy) to a 35-day (RR-9) spaceflight mission: Evidence of blood-retinal barrier disruption and ocular adaptations

description: The health risks associated with spaceflight-induced ocular structural and functional damage has become a recent concern for NASA. The goal of the present study was to characterize the effects of spaceflight and reentry to 1 g on the structure and integrity of the retina and blood-retinal barrier (BRB) in the eye. To investigate possible mechanisms, changes in protein expression profiles were examined in mouse ocular tissue after spaceflight. Ten week old male C57BL/6 mice were launched to the International Space Station (ISS) on Space-X 12 at the Kennedy Space Center (KSC) on August, 2017. After a 35-day mission, mice were returned to Earth alive. Within 38 +/− 4 hours of splashdown, mice were euthanized and ocular tissues were collected for analysis. Ground control (GC) and vivarium control mice were maintained on Earth in flight hardware or normal vivarium cages respectively. Repeated intraocular pressure (IOP) measurements were performed before the flight launch and re-measured before the mice were euthanized after splashdown. IOP was significantly lower in post-flight measurements compared to that of pre-flight (14.4–19.3 mmHg vs 16.3–20.3 mmHg) (p less than 0.05) for the left eye. Flight group had significant apoptosis in the retina and retinal vascular endothelial cells compared to control groups (p less than 0.05). Immunohistochemical analysis of the retina revealed that an increased expression of aquaporin-4 (AQP-4) in the flight mice compared to controls gave strong indication of disturbance of BRB integrity. There were also a significant increase in the expression of platelet endothelial cell adhesion molecule-1 (PECAM-1) and a decrease in the expression of the BRB-related tight junction protein, Zonula occludens-1 (ZO-1). Proteomic analysis showed that many key proteins and pathways responsible for cell death, cell cycle, immune response, mitochondrial function and metabolic stress were significantly altered in the flight mice compared to ground control animals. These data indicate a complex cellular response that may alter retina structure and BRB integrity following long-term spaceflight.  This dataset derives results from Molecular Cellular Imaging (Microscopy) assay.
DOI: 10.6073/pasta/a5ebf1b93505b2b09991a4201b5c87b3
title: ASD04 Stream discharge measured at the flumes on watershed N20B at Konza Prairie

description: Stream discharge is measured on a catchment (N20B), with 20-year fire return interval and grazed by bison since 1992. Measurements are taken at 5 minute intervals at a triangular throated flume. The prairie streams are 3rd-order and are intermittent. Daily and stormflow discharge records are available.
DOI: 10.6084/m9.figshare.25475833
title: Data Platelets

description: We attach the data of a study that aimed to evaluate quality indicators for platelet concentrates in a blood bank in Peru.
DOI: 10.6084/m9.figshare.25475833.v1
title: Data Platelets

description: We attach the data of a study that aimed to evaluate quality indicators for platelet concentrates in a blood bank in Peru.
DOI: 10.7924/r43f4zj2q
title: Duke RDS^2: Respondent-driven sampling for respiratory disease surveillance, the snowball sampling study (social mixing and referrals dataset)

description: Community mixing patterns by sociodemographic traits can inform the risk of epidemic spread among groups, and the balance of in- and out-group mixing affects epidemic potential.  Understanding mixing patterns can provide insight about potential transmission pathways throughout a community.  We used a snowball sampling design to enroll people recently diagnosed with SARS-CoV-2 in an ethnically and racially diverse county and asked them to describe their close contacts and recruit some contacts to enroll in the study.  We constructed egocentric networks of the participants and their contacts and assessed age-mixing, ethnic/racial homophily, and gender homophily.  The total size of the egocentric networks was 2,544 people (n=384 index cases + n=2,160 recruited peers or other contacts).  We observed high rates of in-group mixing among ethnic/racial groups compared to the ethnic/racial proportions of the background population.  Black or African-American respondents interacted with a wider range of ages than other ethnic/racial groups, largely due to familial relationships.  The egocentric networks of non-binary contacts had little age diversity.  Black or African-American respondents in particular reported mixing with older or younger family members, which could increase the risk of transmission to vulnerable age groups.  Understanding community mixing patterns can inform infectious disease risk, support analyses to predict epidemic size, or be used to design campaigns such as vaccination strategies so that community members who have vulnerable contacts are prioritized. 

The project described was supported by Grant/Cooperative Agreement Number 75D30120C09551 made to Duke University from the Centers for Disease Control and Prevention (CDC), US Department of Health and Human Services (HHS), awarded to D.K.P., J.M., and K. B.-E.  Its contents are solely the responsibility of the authors and do not necessarily represent the official views of CDC or US HHS.  D.K.P. and J.M. were also supported by the National Institutes of Health (NIH) Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) (Grant Awards R25HD079352 (awarded to J.M.), R21HD104431 (awarded to J.M. and D.K.P.), and R21HD101268 (awarded to J.M. and D.K.P)) and National Science Foundation (Grant Award SES-2029790 (awarded to J.M. and D.K.P)).  The contents are solely the responsibility of the authors and do not necessarily represent the official views of NIH or NSF.  The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
DOI: 10.5281/zenodo.10870585
title: Formation and Retrieval of Cell Assemblies in a Biologically Realistic Spiking Neural Network Model of Area CA3 in the Mouse Hippocampus

description: Dataset accompanying the manuscript "Formation and Retrieval of Cell Assemblies in a Biologically Realistic Spiking Neural Network Model of Area CA3 in the Mouse Hippocampus". This dataset is used to re-create all figure panels with underlying data in the manuscript.
DOI: 10.5281/zenodo.10870586
title: Formation and Retrieval of Cell Assemblies in a Biologically Realistic Spiking Neural Network Model of Area CA3 in the Mouse Hippocampus

description: Dataset accompanying the manuscript "Formation and Retrieval of Cell Assemblies in a Biologically Realistic Spiking Neural Network Model of Area CA3 in the Mouse Hippocampus". This dataset is used to re-create all figure panels with underlying data in the manuscript.
DOI: 10.5281/zenodo.10870990
title: The public part of the interview extractions as thematic codings: used for the consumer behavior study

description: Extractions from interview transcripts created by the thematic analysis, this data is part of the interview study done on consumer energy behavior during price hikes,
DOI: 10.5281/zenodo.10870991
title: The public part of the interview extractions as thematic codings: used for the consumer behavior study

description: Extractions from interview transcripts created by the thematic analysis, this data is part of the interview study done on consumer energy behavior during price hikes,
DOI: 10.25919/2gkg-rj69
title: Parkes observations for project PX600 semester 2020APRS_100

description: The Galactic Center (GC) is a key target for the radio component of Breakthrough Listen (BL) program. Offering the largest amount of stars in any given direction in the sky, the GC is widely cited as a location believed to harbour advanced civilizations, and it is also the most energetic region in the Milky Way. We aim to conduct BL-GC Survey with Parkes radio telescope for around 350 hours. We will cover the frequency range from 700 MHz to 4 GHz, utilizing the newly installed ultra-wideband receiver. Our team has already leveraged both standard and bespoke tools to construct a flexible software stack to search data for signals of interest. We will look for signals from extraterrestrial intelligence (ETI) by searching for both simple narrow-band signals and complex modulated signals. Along with that, as an ancillary science, we will also search for accelerated pulsars — likely orbiting a supermassive black hole at the centre of the Milky Way Galaxy. Data products produced during this program will also be publically available to engage larger pulsar community
DOI: 10.25919/8pvk-av96
title: Parkes observations for project P1050 semester 2023OCTS_12

description: This is a request for the observation time for the timing campaign of new pulsars discovered in the reprocessing of the low-latitude Galactic plane section of the HTRU-S survey (HTRU-S LowLat) and the Parkes Multibeam Pulsar Survey (PMPS). We have completed 90 % of the HTRU-S LowLat survey and completed zero acceleration PMPS search with GPU-based coherent acceleration search, template bank, and fast folding algorithm pipelines and now have discovered 112 previously unknown pulsars among which 18 were found in the PMPS. Interesting science can usually only be derived from a new pulsar after confirmation, and a follow-up timing campaign is carried out. At least 1-2 year of initial timing is the minimum timespan required to fully characterise any newly-discovered pulsars, essential for deriving pulsar parameters such as the characteristic age, magnetic field strength, and spin-down rate, as well as for detecting any unexpected behaviour of the pulsar which might result from emission instabilities. This project is necessary for the timing of several interesting pulsars, including binary pulsars, high DM pulsars, scattered profile pulsars, and bright ones that show emissions in larger bandwidths in the UWL band. Apart from this, finding the nature of a unique binary pulsar system via a dedicated observing campaign is also another goal. The follow-up timing in semester 2023OCTS will assist in completing many exciting large-term science goals.
DOI: 10.25919/mcfc-rz60
title: Parkes observations for project P1207 semester 2023OCTS_05

description: Whether there is a large population of pulsars in the Bulge, millisecond pulsars in particular, is a long-standing problem. We recently carried out a survey of a small region toward the Bulge with the Five-hundred-meter Aperture Spherical Telescope (FAST) and discovered more than 10 pulsar candidates. Four bright pulsar candidates are estimated to have distances larger than 3kpc and are therefore likely located in the Bulge region. Considering the small number of pulsars we know in the Bulge, the determination of spin and astrometric parameters of these pulsars can be important for us to understand the pulsar population in the Bulge. These information can then be used to investigate the origin of Gamma-ray emission and the electron density distribution in the region. Here we propose to carry out confirmation observation of nine pulsar candidates and time those four bright ones (detected with S/N&gt;20, and with distance larger than 3kpc) with Parkes.
DOI: 10.5281/zenodo.10864489
title: Fishing and Overfishing

description: Disseration :  Anthropogenic impact on biodiversity collapse in the world's oceans
DOI: 10.5281/zenodo.10864490
title: Fishing and Overfishing

description: Disseration :  Anthropogenic impact on biodiversity collapse in the world's oceans
DOI: 10.5281/zenodo.10871047
title: Calypso hydrographic data

description: Data for "3D-intrusions transport active surface microbial assemblages to the dark ocean"
DOI: 10.5281/zenodo.10871048
title: Calypso hydrographic data

description: Data for "3D-intrusions transport active surface microbial assemblages to the dark ocean"
DOI: 10.6073/pasta/7b75a0efa4617f7d34dd9f2f583b686a
title: ASD05 Stream discharge measured at the flumes on watershed N01B at Konza Prairie

description: Stream discharge is measured on a catchment (N01B), with 1-year fire return interval and grazed by bison since 1992. Measurements are taken at 5 minute intervals at a triangular throated flume. The prairie streams are 3rd-order and are intermittent. Daily and stormflow discharge records are available.
DOI: 10.6084/m9.figshare.25466458.v2
title: Data for: Climate change alters tension of conflicting selection pressures on breeding date in a passerine bird by Moelling and Duckworth

description: Contains data and SAS code for performing an analysis of natural selection on breeding date in a population of western bluebirds as well as a historical trend analysis of April temperatures and cold snap occurrence in the area since 1948. Breeding data comes from a long-term study of a population of western bluebirds in western Montana. Climate data were taken from a local weather station approximately 10km from the site (Missoula International Airport, Station USW00024153) using Cornell’s single station data tool CLIMOD
DOI: 10.34740/kaggle/dsv/7940291
title: Tomato Diseases
DOI: 10.6073/pasta/0a511eb7b7eb6b97ddeeabbc057d1d21
title: SONGS Mitigation Monitoring: Experimental Reef Survey - Giant Kelp Outplant Size-Specific Survivorship

description: These data describe the size-specific survivorship of laboratory-reared embryonic giant kelp, Macrocystis pyrifera, outplanted at an artificial reef (Wheeler North Reef in Orange County, CA). 
In summer 2000 divers deployed 23-30 outplant units containing embryonic kelp to 14 modules of Wheeler North Reef. 
Size specific survivorship was measured by recording the number and size of outplanted kelp on surviving outplant units three and eleven months after deployment. 
Measurements of size were categorical and included small single blades (recruits), multi-bladed plants less than 1m tall, and multi-frond plants equal or greater than 1 m tall.
DOI: 10.34740/kaggle/dsv/7941303
title: Public Opinion Russia Ukraine War (Updated Daily)
DOI: 10.6073/pasta/cff758a0736702b20d9b6338e9bbbc25
title: ASD06 Stream discharge measured at the flumes on watershed N02B at Konza Prairie

description: Stream discharge is measured on a catchment (N02B), with 2-year fire return interval and grazed by bison since 1992. Measurements are taken at 5 minute intervals at a triangular throated flume. The prairie streams are 3rd-order and are intermittent. Daily and stormflow discharge records are available.
DOI: 10.25345/c5g44j23q
title: MassIVE MSV000094402 - Identification of markers for the isolation of neuron-specific extracellular vesicles
title: Extracellular vesicles (EVs) are released by all cells and contain RNA and protein from their cell of origin. EVs in biofluids could be used as diagnostic biomarkers to non-invasively report the state of inaccessible cells, such as neurons in the brain. As biofluids such as cerebrospinal fluid (CSF) and plasma contain EVs originating from many different cells, isolating cell type-specific EVs and measuring their cargo could help determine the state of specific cell types. Here, we demonstrate an approach aiming to immuno-isolate EVs from neurons based on neuron-derived protein surface markers. We first developed a framework to select transmembrane proteins suitable as neuron-specific EV markers based on gene expression and EV proteomics data. Leveraging a novel, high-purity EV isolation method we developed, we further cataloged the proteins present on EVs in human CSF and plasma. Using immunoassays against several of the predicted neuron-specific proteins, we confirmed one marker, NRXN3 as present on EVs in CSF and plasma by size exclusion chromatography (SEC) and density gradient centrifugation (DGC). Finally, we developed efficient EV immuno-isolation methods and applied them to isolate NRXN3+ EVs. Our study provides a general methodology for the isolation of cell-type specific EVs and paves the way for the use of neuron-derived EVs to study and diagnose neurological disease.
DOI: 10.6084/m9.figshare.24280054
title: Effects of Neutering for for German Short/Wirehaired Pointer, Mastiff, Newfoundland, Rhodesian Ridgeback, Siberian Husky

description: Datasets used to study the effects of neutering (including spaying) in increasing the incidence of joint disorders and cancers in German Short/Wirehaired Pointer, Mastiff, Newfoundland, Rhodesian Ridgeback, Siberian Husky. Veterinary hospital records from the University of California, Davis were examined for dogs ranging from ages 1 to 11 for the effects of neutering during the specified age ranges: before 6 mo., and during 6-11 mo., during 1 year and in years 2 through 8. The diseases examined were hip dysplasia, CCL tear, elbow dysplasia, lymphoma, mast cell tumor, hemangiosarcoma, osteosarcoma, mammary cancer, pyometra, and urinary incontinence.
DOI: 10.5281/zenodo.6908188
title: Model America - data for every U.S. building

description:  

DATA HAS BEEN MIGRATED TO https://data.ess-dive.lbl.gov/view/doi:10.15485/2283980

 

The 5-year goal of the “Model America” concept was to generate a model of every building in the United States. This data repository delivers on that goal with "Model America v1".

Oak Ridge National Laboratory (ORNL) has developed the Automatic Building Energy Modeling (AutoBEM) software suite to process multiple types of data, extract building-specific descriptors, generate building energy models, and simulate them on High Performance Computing (HPC) resources. For more information, see AutoBEM-related publications (bit.ly/AutoBEM).

There were 125,715,609 buildings detected in the United States. Of this number, 122,146,671 (97.2%) buildings resulted in a successful generation and simulation of a building energy model. This dataset includes the full 125 million buildings. Future updates may include additional buildings, data improvements, or other algorithmic model enhancements in "Model America v2".



Data, separated by state - minimalist list of each building (rows) for the following fields (columns)



ID - unique building ID

Footprint2D - lat/lon vertices of building footprint

State_Abbrev - Abbreviation for the from which building is located

Area - estimate of total conditioned floor area (ft2)

Area2D - footprint area (ft2) 

CZ - ASHRAE Climate Zone designation

Height - building height (ft)

NumFloors - number of floors (above-grade) 

WWR_surfaces - percent of each facade (pair of points from Footprint2D) covered by fenestration/windows (average 14.5% for residential, 40% for commercial buildings)

CZ - US climate zone designation

BuildingType - DOE prototype building designation (IECC=residential) as implemented by OpenStudio-standards

Standard - building vintage (determined by building age)




This data is made free and openly available in hopes of stimulating any simulation-informed use case. Data is provided as-is with no warranties, express or implied, regarding fitness for a particular purpose. We wish to thank our sponsors which include Oak Ridge National Laboratory (ORNL) Laboratory Directed Research and Development (LDRD), U.S. Dept. of Energy’s (DOE) Building Technologies Office (BTO), Office of Electricity (OE), Biological and Environmental Research (BER), and National Nuclear Security Administration (NNSA).
DOI: 10.5281/zenodo.6908189
title: Model America - data for every U.S. building

description:  

DATA HAS BEEN MIGRATED TO https://data.ess-dive.lbl.gov/view/doi:10.15485/2283980

 

The 5-year goal of the “Model America” concept was to generate a model of every building in the United States. This data repository delivers on that goal with "Model America v1".

Oak Ridge National Laboratory (ORNL) has developed the Automatic Building Energy Modeling (AutoBEM) software suite to process multiple types of data, extract building-specific descriptors, generate building energy models, and simulate them on High Performance Computing (HPC) resources. For more information, see AutoBEM-related publications (bit.ly/AutoBEM).

There were 125,715,609 buildings detected in the United States. Of this number, 122,146,671 (97.2%) buildings resulted in a successful generation and simulation of a building energy model. This dataset includes the full 125 million buildings. Future updates may include additional buildings, data improvements, or other algorithmic model enhancements in "Model America v2".



Data, separated by state - minimalist list of each building (rows) for the following fields (columns)



ID - unique building ID

Footprint2D - lat/lon vertices of building footprint

State_Abbrev - Abbreviation for the from which building is located

Area - estimate of total conditioned floor area (ft2)

Area2D - footprint area (ft2) 

CZ - ASHRAE Climate Zone designation

Height - building height (ft)

NumFloors - number of floors (above-grade) 

WWR_surfaces - percent of each facade (pair of points from Footprint2D) covered by fenestration/windows (average 14.5% for residential, 40% for commercial buildings)

CZ - US climate zone designation

BuildingType - DOE prototype building designation (IECC=residential) as implemented by OpenStudio-standards

Standard - building vintage (determined by building age)




This data is made free and openly available in hopes of stimulating any simulation-informed use case. Data is provided as-is with no warranties, express or implied, regarding fitness for a particular purpose. We wish to thank our sponsors which include Oak Ridge National Laboratory (ORNL) Laboratory Directed Research and Development (LDRD), U.S. Dept. of Energy’s (DOE) Building Technologies Office (BTO), Office of Electricity (OE), Biological and Environmental Research (BER), and National Nuclear Security Administration (NNSA).
DOI: 10.5281/zenodo.10866105
title: Supplementary Material - "Explanations in Everyday Software Systems: Towards a Taxonomy for Explainability Needs" (RE'24)

description: This artifact contains the questionnaire, coding guidelines and resulting coded data set for the research paper "Explanations in Everyday Software Systems: Towards a Taxonomy for Explainability Needs" submitted to and accepted at the 32nd IEEE International Requirements Engineering 2024 conference. This artifact does not contain any automated analyses or tools.