cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/c5b664929fbbe7d407f9df8ef323848a
title: INTERPNT Software for Mapping Trees Using Distance Measurements

description: The INTERPNT method can be used to produce accurate maps of trees based solely on tree diameter and tree-to-tree distance measurements. For additional details on the technique please see the published paper (Boose, E. R., E. F. Boose and A. L. Lezberg. 1998. A practical method for mapping trees using distance measurements. Ecology 79: 819-827). Additional information is contained in the documentation that accompanies the program. The Abstract from the paper is reproduced below. "Accurate maps of the locations of trees are useful for many ecological studies but are often difficult to obtain with traditional surveying methods because the trees hinder line of sight measurements. An alternative method, inspired by earlier work of F. Rohlf and J. Archie, is presented. This "Interpoint method" is based solely on tree diameter and tree-to-tree distance measurements. A computer performs the necessary triangulation and detects gross errors. The Interpoint method was used to map trees in seven long-term study plots at the Harvard Forest, ranging from 0.25 ha (200 trees) to 0.80 ha (889 trees). The question of accumulation of error was addressed though a computer simulation designed to model field conditions as closely as possible. The simulation showed that the technique is highly accurate and that errors accumulate quite slowly if measurements are made with reasonable care (e.g., average predicted location errors after 1,000 trees and after 10,000 trees were 9 cm and 15 cm, respectively, for measurement errors comparable to field conditions; similar values were obtained in an independent survey of one of the field plots). The technique requires only measuring tapes, a computer, and two or three field personnel. Previous field experience is not required. The Interpoint method is a good choice for mapping trees where a high level of accuracy is desired, especially where expensive surveying equipment and trained personnel are not available."
DOI: 10.6073/pasta/32716ab0964f03a7d5c3adf57119b930
title: EXPOS Model for Estimating Topographic Exposure to Wind

description: EXPOS is a simple model of topographic exposure to wind that utilizes digital elevation data to predict which points on a landscape are exposed to or protected from a given wind direction. The model was developed to approximate the effects of topography on hurricane wind flow at a landscape scale (~ 10 km). The model requires an accurate digital elevation map and a specified wind direction. Each point on the elevation map is then classified as protected or exposed, depending on whether or not it falls within the wind shadow cast by points upwind. The wind shadow is estimated by assuming that the wind bends downward no more than a fixed inflection angle from the horizontal as it passes over a height of land. The effects of topographic features beyond the margins of the input elevation map are of course not predicted by the model. For a given landscape and wind direction, predicted protected areas decrease in size as the inflection angle increases. Application of the model in studies of two recent hurricanes suggests that the probability of wind damage in protected areas also decreases as the inflection angle increases. An inflection angle of about 5 to 10 degrees was found to give good results. For more information on the EXPOS model, please see the published paper (Boose, E. R., D. R. Foster, and M. Fluet. 1994. Hurricane impacts to tropical and temperate forest landscapes. Ecological Monographs 64: 369-400). Additional information is contained in the documentation that accompanies the program.
DOI: 10.5281/zenodo.4917367
title: RosettaSurf - a surface-centric computational design approach

description: Finely orchestrated protein-protein interactions are at the heart of virtually all fundamental cellular processes. Altering these processes or encoding new functions in proteins has been a long-standing goal in computational protein design. Protein design methods commonly rely on scoring functions that seek to identify amino acid sequences that optimize structural configurations of atoms while minimizing a variety of physics-based and statistical terms. The objectives of the large majority of computational design protocols have been focused on obtaining a predefined structural conformation. However, routinely introducing a functional aspect on designer proteins has been more challenging. Our results suggest that the molecular surface features can be a useful optimization parameter to guide the design process towards functional surfaces that mimic known protein binding sites and interact with their intended targets. Specifically, we demonstrate that our design method can optimize experimental libraries through computational screening, creating a basis for highly specific protein binders, as well as design a potent immunogen that engages with site-specific antibodies. The ability to create proteins with novel functions will be transformative for biomedical applications, providing many opportunities for the design of novel immunogens, protein components for synthetic biology, and other protein-based biotechnologies.
DOI: 10.5281/zenodo.4917366
title: RosettaSurf - a surface-centric computational design approach

description: Finely orchestrated protein-protein interactions are at the heart of virtually all fundamental cellular processes. Altering these processes or encoding new functions in proteins has been a long-standing goal in computational protein design. Protein design methods commonly rely on scoring functions that seek to identify amino acid sequences that optimize structural configurations of atoms while minimizing a variety of physics-based and statistical terms. The objectives of the large majority of computational design protocols have been focused on obtaining a predefined structural conformation. However, routinely introducing a functional aspect on designer proteins has been more challenging. Our results suggest that the molecular surface features can be a useful optimization parameter to guide the design process towards functional surfaces that mimic known protein binding sites and interact with their intended targets. Specifically, we demonstrate that our design method can optimize experimental libraries through computational screening, creating a basis for highly specific protein binders, as well as design a potent immunogen that engages with site-specific antibodies. The ability to create proteins with novel functions will be transformative for biomedical applications, providing many opportunities for the design of novel immunogens, protein components for synthetic biology, and other protein-based biotechnologies.
DOI: 10.17632/tz7pjtbpmk.1
title: Schilling et al_2021

description: Submission Schilling et al_original image dataset
DOI: 10.6073/pasta/d32e44edce6840ec2cabf6dc02d42bb1
title: HURRECON Model for Estimating Hurricane Wind Speed, Direction and Damage

description: HURRECON is a simple meteorological model that estimates hurricane surface wind speed and direction based on the track, size, and intensity of a hurricane and the surface type (land or water). The model also estimates Fujita-scale wind damage as a function of peak 1/4 mile wind speed and wind gust factor. Estimates can be generated for a single site or a rectangular region. The model is based on published empirical studies of many hurricanes. HURRECON can be used to study the impacts of individual hurricanes or to reconstruct the hurricane disturbance regime for a particular region. For more information on the most recent version of the model please see the published paper (Boose, E. R., K. E. Chamberlin and D. R. Foster. 2001. Landscape and regional impacts of hurricanes in New England. Ecological Monographs 71: 27-48). Additional information is contained in the documentation that accompanies the program.
DOI: 10.17632/dh6gwnpmj2.1
title: IPO-GDP Data 1990-2019

description: Primary equity market - GDP panel data for the period 1990-2019
DOI: 10.17632/662gkpjfd9.1
title: LeptonInjector and LeptonWeighter: A neutrino event generator and weighter for neutrino observatories

description: We present a high-energy neutrino event generator, called LeptonInjector, alongside an event weighter, called LeptonWeighter. Both are designed for large-volume Cherenkov neutrino telescopes such as IceCube. The neutrino event generator allows for quick and flexible simulation of neutrino events within and around the detector volume, and implements the leading Standard Model neutrino interaction processes relevant for neutrino observatories: neutrino-nucleon deep-inelastic scattering and neutrino-electron annihilation. In this paper, we discuss the event generation algorithm, the weighting algorithm, and the main functions of the publicly available code, with examples.
DOI: 10.17632/wh8ykt7mbb.1
title: TIA algorithm data and code (V3.0)

description: Floating car DatA in an area of the Gulou Zone in Fuzhou, China. The area is the core center of Fuzhou and is densely populated. Floating car trajectories were collected from May 5th, 2018 and the data contain 6,402,027 GPS sample points of 7073 taxes (Dataset, 2020). The trajectories comprise from 10s to 60s sample points with an average sample rate of 20s.
DOI: 10.17632/25sf6x4c5j.1
title: Data for: Can solar tower plants withstand the operational flexibility of combined cycle plants?

description: Trends of the main thermodynamics variables during the transient response of the steam genrator. The meaning of the different variables is detailed below: % t: time [s] 1D vector % pv: HP turbine steam pressure [bar] 1D vector % prhv: LP turbine steam pressure [bar] 1D vector % m1v: HP turbine steam mass flow [kg/s] 1D vector % m1rhv: LP turbine steam mass flow [kg/s] 1D vector % m2v: salt mass flow [kg/s] 1D vector % t1shov: superheater steam oultel temperature [ºC] 1D vector % t1shova: (Attemperated) HP turbine steam inlet temperature [ºC] 1D vector % t1rhov: LP turbine steam inlet temperature [ºC] 1D vector % t2shiv: steam generator salt inlet temperature [ºC] 1D vector % t2phov: steam generator salt outlet temperature [ºC] 1D vector % t1phiv: steam generator feed-water inlet temperature [ºC] 1D vector
DOI: 10.17632/yf4s297sty.2
title: Centralised coordination of EVs charging and PV active power curtailment over multiple aggregators in low voltage networks

description: This directory contains the following datasets: SOURCE CODE Four scripts in Python are included to obtain the parameters of the whole network and test the proposed optimisation approaches. SENSITIVITY MATRICES, INITIAL VOLTAGES AND LOADING LEVELS OF THE LOW-VOLTAGE FEEDERS Voltage sensitivity matrices are obtained according to the description in Section 4.2, which is implemented in the file "Get_Sensitivity_Coeff_PowerFactory_Aggregator.py" Voltage and loading time series were obtained using the above file for a test period of 30 hours with a 10-minute interval (i.e., 180 slots of time) per phase for every household node using the unbalanced quasi-dynamic power flow (QDPF) POWER/ENERGY BOUNDARIES OF EVs The proposed model in Sections 2.3 to 2.5 is computed through the file "EV_Energy_Power_Bounds_from_Zero.py" It is also included the LV network in PowerFactory V2016 with a series of EVs and PVs. Although these devices have a time-series profile assigned, these are not used for optimisation. However, these can be changed by the profiles derived from the second optimisation strategy to perform further analysis in PowerFactory.
DOI: 10.17632/yttdj9n6rh.1
title: German dentists' knowledge about child abuse and neglect

description: Background Studies from several countries have shown that there is a lack of knowledge related to child protection among dentists and their teams. So far, there are no data available about the situation in Germany. Aim To describe the perception of the role of German dentists in terms of child abuse and neglect. Design A questionnaire previously used by other studies regarding the role of dentists in child protection was adapted to German terminology and provided online. The internet address has been shown in different German dentists’ association journals addressing dentists only. The participation was voluntary. Results A total of 251 (79.68%) dentists completed the questionnaire with valid data; 62.5% reported to have had a suspicion of child abuse or neglect. Of these, 21,7% had reported their suspicion to the social services. Dentists specialized in pediatric dentistry reported their suspicion more often. Most frequently reported barriers towards contacting social services were uncertainty about diagnosis, fear of violence towards the child and the lack of knowledge in terms of referral procedures. Most of the participants expressed a need for further education. Conclusions Dentists in Germany are not able to fill their role in child protection matters sufficiently and show a need for undergraduate and continuing postgraduate training
DOI: 10.17632/xgmxytbmnt.2
title: New Energy Bound-Based Model for Optimal Charging of Electric Vehicles with Solar Photovoltaic Considering Low-Voltage Network's Constraints

description: This directory contains the following datasets: SOURCE CODE Three scripts in Python are included to obtain the parameters of the whole network and test the proposed optimisation approach. SENSITIVITY MATRICES OF THE 905-NODES LOW-VOLTAGE FEEDER * dVcal.txt: voltage sensitivity matrix of household nodes due to the addition of load, expressed in V/kW * dVGen.txt: voltage sensitivity matrix of household nodes due to the addition of generation, expressed in V/kW * dLline.txt: loading sensitivity matrix of the feeder's main cable due to the addition of load, expressed in kW/kW * dLlineGen.txt: loading sensitivity matrix of the feeder's main cable due to the addition of generation, expressed in kW/kW * dStcal.txt: loading sensitivity matrix of the distribution transformer due to the addition of load, expressed in kW/kW * dStGen.txt: loading sensitivity matrix of the distribution transformer due to the addition of generation, expressed in kW/kW INITIAL VOLTAGES AND LOADING LEVELS These data were obtained for a test period of 30 hours with a 10-minute interval (i.e., 180 slots of time). * Vini.txt: time-series of voltage per phase for every household node obtained from the unbalanced quasi-dynamic power flow (QDPF) * PLini.txt: time-series of loading per phase for the feeder's main cable obtained from the unbalanced QDPF * STini.txt: time-series of loading per phase for the distribution transformer obtained from the unbalanced QDPF INPUT AND ADDITIONAL PARAMETERS Both folders "Winter parameters" and "Summer parameters" contain 100 text files, which correspond to each simulated scenario, numbered from one to one hundred for the following variables: * DtX.txt: the daily travelled distance of each EV for scenario X * e_arrX.txt: the arrival energy level of each EV for scenario X * taIntX.txt: the arrival time interval of each EV for scenario X * tpIntX.txt: the number of time intervals of each EV parked at home for scenario X * e_reqX.txt: the objective energy level of each EV for scenario X * xX.txt: the availability of each EV for scenario X, which is based on taIntX.txt and tpIntX.txt * eLowerX.txt: the lower energy boundary of each EV for scenario X * eUpperX.txt: the upper energy boundary of each EV for scenario X * PpvX.txt: time-series of PV power output for scenario X It is also included the IEEE LV network in PowerFactory V15.1 with a series of EVs and PVs. These have a time-series profile assigned from the proposed optimisation problem results. Additionally, the parameters and results obtained by comparing the addition of network constraints are included.
DOI: 10.17632/4vftxh97m8.1
title: Botnet Group Activity Dataset

description: The dataset comprises bot group activities, consisting of 13 scenarios with bot actors and activity patterns in different bots. Each dataset scenario has 14 features. These are start time, duration, protocol, source IP address, source port address, direction of transaction, destination IP address, destination port address, state of transaction, source TOS byte value, destination TOS byte value, total transaction packet count, total transaction bytes, source packet transaction and one feature as activity label. The bot group activity dataset is presented in the binetflow file form. In the scenario dataset directory, there are several files, namely dataset_result.binetflow for the datasets containing bot group activities and normal activities with activity labels, dataset_result.botnet_only.binetflow for datasets containing only bot group activities, dataset_result.normal_only.binetflow for datasets containing only normal host activities, dataset_result.without_label.binetflow for the dataset containing bot group activities and normal activities without activity labels. The dataset describes each dataset scenario for data analysis, such as activity time, activity duration, number of normal host activities, number of bot activities, number of the bot actors, and total activity records. In addition, graphs of normal and bot activities are also presented in time analysis to see the intensity and periodic behavior. In particular, this dataset is provided as a dataset for bot group activities by showing a series of interrelated activities. Therefore, this dataset can be used as research data for periodic and intense bot group activity detection and as a knowledge database with various bot activity scenarios. The dataset has resulted from the adoption of botnet dataset behavior on the CTU Dataset [1]. The difference is that this presented dataset has the intensity and periodic bot activity for each dataset scenario. Thus, this dataset is suitable for research in detecting bot group activity with a time-based segmentation approach [2]–[4]. Besides, this dataset has a more stable amount of activity in the regular (1 hour) compared to the CTU dataset.
DOI: 10.17632/67dcgtbks5.2
title: Nascent RNA antagonises the interaction of a set of regulatory proteins with chromatin

description: A number of regulatory factors are recruited to chromatin by specialised RNAs. Whether RNA has a more general role in regulating the interaction of proteins with chromatin has not been determined. We used proteomics methods to measure the global impact of nascent RNA on chromatin in embryonic stem cells. Surprisingly, we found that nascent RNA primarily antagonised the interaction of chromatin modifiers and transcriptional regulators with chromatin. Transcriptional inhibition and RNA degradation induced recruitment of a set of transcriptional regulators, chromatin modifiers, nucleosome remodelers, and regulators of higher-order structure. RNA directly bound to factors including BAF, NuRD, EHMT1 and INO80 and inhibited their interaction with nucleosomes. The transcriptional elongation factor P-TEFb directly bound pre-mRNA and its recruitment to chromatin upon Pol II inhibition was regulated by the 7SK ribonucleoprotein complex. We postulate that by antagonising the interaction of regulatory proteins with chromatin, nascent RNA links transcriptional output with chromatin composition.
DOI: 10.17632/zcm6rnv9bb.3
title: Relative deprivation leads to the endorsement of “anti-chicken soup” in China

description: This research contains two data. Data-Study 1 is the data of study 1 and Data-Study 2 is the data of study 2.
DOI: 10.6084/m9.figshare.14766102.v7
title: antspyt1w helper data

description: downloadable cloud data for testing and processing
DOI: 10.17632/wby9xjnfpx.1
title: An ocean current-oriented graph model for representing Argo trajectories

description: This dataset is shared data of articles, and the title of the article is the same as the dataset's, and the dataset contains two types of basic data and code.
DOI: 10.6073/pasta/fde880e60c6074f1a137d7ee5c7b3b92
title: Vegetation Patterns in Northeastern North America 1500-2000

description: Over the last few centuries, human activities have changed the landscape of northeastern North America from mostly forested to a patchwork of forest, farmland and logged areas, back in many areas to mostly forested. Meanwhile, there have been many rapid changes in the composition of the remaining forests, for example, the amounts of hemlock (Tsuga canadensis) and beech (Fagus grandifolia) have decreased while the amount of birch (Betula spp.) has increased. How stable have been the basic vegetational patterns under the onslaught of these landscape and compositional changes? In preliminary analyses, the assemblages of major tree taxa have been zoned for every other century, using optimal splitting by information content and other techniques, to study changes in vegetation groupings over the last 500 years. Several patterns seem to be emerging on a centennial scale: First, vegetation patterns were changing in the centuries before European colonization of the area. Second, the number of zones (vegetation types, based on pollen), was greater in 1700 and 1900 than in 1500 or now. Third, the zone boundaries have moved north from 1500 to the present. Further analyses, including several more data sets will be used to refine these conclusions and to suggest explanations for the changes.
DOI: 10.17632/93y4tgm3xv.1
title: LINF_130021400

description: SAS-4 (Spindle assembly abnormal 4) Leishmania infantum (strain JPCM5)
DOI: 10.15468/gejr7t
title: Two new species of Pavonia section Lebretonia subsection Hastifoliae (Malvaceae: Malvoideae) from southern Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Grings, Martin, Boldrini, Ilsi Iob (2012): Two new species of Pavonia section Lebretonia subsection Hastifoliae (Malvaceae: Malvoideae) from southern Brazil. Phytotaxa 39: 38-46, DOI: 10.11646/phytotaxa.39.1.3, URL: http://biotaxa.org/Phytotaxa/article/view/phytotaxa.39.1.3
DOI: 10.6073/pasta/f534b58892bf288965e1edef9428f3cf
title: Long-term Dynamics of Vegetation and Environment in Central Massachusetts 1000-2000

description: Historical and ecological data from north-central Massachusetts suggest that widespread and intensive human disturbance after European settlement led to a shift in forest composition and obscured regional patterns of species abundance. A paleoecological approach was required to place recent forest dynamics in a long-term context. Pollen and charcoal data from 11 small lakes in north-central Massachusetts were used to reconstruct local vegetation dynamics and fire histories across the region over the past 1000 years. The sites are located across an environmental gradient. Paleoecological data indicate that prior to European settlement, there was regional variation in forest composition corresponding to differences in climate, substrate, and fire regime. Oak, chestnut and hickory were abundant at low elevations, whereas hemlock, beech, sugar maple, and yellow birch were common at high elevations. Fire appears to have been more frequent and/or intense at lower elevations, maintaining high abundances of oak, and archaeological data suggest Native American populations were greater in these areas. A change in forest composition at higher elevations, around 550 years before present, may be related to the Little Ice Age (a period of variable climate), fire, and/or activity by Native Americans, and led to regional convergence in forest composition. After European settlement, forest composition changed markedly in response to human disturbance and there was a sharp increase in rates of vegetation change. Regional patterns were obscured further, leading to homogenization of broad-scale forest composition. There is no indication from the pollen data that forests are returning to pre-European settlement forest composition, and rates of vegetation change remain high, reflecting continuing disturbance to the landscape, despite regional reforestation.