cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13020/xgr6-pt58
title: Access Across America: Transit 2019 Data

description: These data were created as part of a study that examined the accessibility to jobs by transit in the 50 largest (by population) metropolitan areas in the United States. It is the most detailed evaluation to date of access to jobs by transit, and it allows for a direct comparison of the transit accessibility performance of America's largest metropolitan areas. These data are part of a longitudinal study.
description: These data were created as part of a study that examined the accessibility to jobs by transit in the 50 largest (by population) metropolitan areas in the United States. It is the most detailed evaluation to date of access to jobs by transit, and it allows for a direct comparison of the transit accessibility performance of America's largest metropolitan areas. These data are part of a longitudinal study.  Transit data for additional years can be found in the Accessibility Observatory Data collection: http://hdl.handle.net/11299/200592
description: Downloads are available for individual metropolitan regions, as well as states, in open-source Geopackage format. A combined ZIP file containing the Geopackage files for all 50 metropolitan regions is also available, and is labeled "All Metropolitan Regions."
DOI: 10.13020/d6197g
title: Delta Basin-2 Tidal Experiments (2016-2017)

description: These experiments were conducted in St. Anthony Fall Laboratory (SAFL) Delta Basin. This is a fixed based basin (5 m wide x 5 m long x 0.5 m deep) that is fed sediment and water from an input source to create model deltas. Sea-level adjustment via relative sea-level rise and tidal cycles is available in this facility and was in fact used for these experiments. This facility is able to collect data via an overhead DSLR camera (which made the time-lapse videos themselves) and a digital line scan camera capable of making digital elevation models with sub-millimeter accuracy.
description: Delta experiments ran in Delta Basin-2 (DB2) with fluvial and tidal forcing. All deltas experienced 0.5 mm/hr of relative sea-level rise and water and sediment discharge rates of 5.0e-5 m^3/s and 5.0e-7 m^3/s respectively.

DB2-1601: 10 mm amplitude tides with a 2 min period.
DB2-1701: 3.5 mm amplitude tides with a 2 min period.
DB2-1604: No tides.

The videos were made by stitching together thousands of pictures taken from a fixed camera above the basin. The camera is oriented so that each pixel is roughly 1mm by 1mm.
DOI: 10.13020/tcea-6f08
title: Supplementary materials for A Review of Affective Computing Research Based on Function-Component-Representation Framework

description: The data provide detailed information about our conceptual analysis. These data files can increase the transparency, reproducibility, and replicability of our paper and facilitate knowledge sharing among the research community. It is requested by reviewers of our paper to publicize these data for the benefit of readers and the research community.
description: There are three data files. The first data file includes complete results of our coding of 1,110 papers in terms of function (along with detailed subtopic), component (along with detailed modality), and representation (along with detailed type) that are discussed in our survey paper. The second data file includes lists of related surveys, books, and other resources that are mentioned in our survey paper and can be used for additional reference to our survey paper. The third data file includes tables of frequency distributions of 1,110 papers over different coding categories and over time.
DOI: 10.13020/s99e-s560
title: Climate-biome envelope model for the Western Great Lakes Region

description: Research Highlights: We modeled climate-biome envelopes at high resolution in the Western Great Lakes Region for recent and future time-periods. The projected biome shifts, in conjunction with heterogeneous distribution of protected land, may create both great challenges for conservation of particular ecosystems and novel conservation opportunities. Background and Objectives: Climate change this century will affect the distribution and relative abundance of ecological communities against a mostly static background of protected land. We developed a climate-biome envelope model using a priori climate-vegetation relationships for the Western Great Lakes Region (Minnesota, Wisconsin and Michigan USA and adjacent Ontario, Canada) to predict potential biomes and ecotones—boreal forest, mixed forest, temperate forest, prairie–forest border, and prairie—for a recent climate normal period (1979–2013) and future conditions (2061–2080). Materials and Methods: We analyzed six scenarios, two representative concentration pathways (RCP)—4.5 and 8.5, and three global climate models to represent cool, average, and warm scenarios to predict climate-biome envelopes for 2061–2080. To assess implications of the changes for conservation, we analyzed the amount of land with climate suited for each of the biomes and ecotones both region-wide and within protected areas, under current and future conditions. Results: Recent biome boundaries were accurately represented by the climate-biome envelope model. The modeled future conditions show at least a 96% loss in areas suitable for the boreal and mixed forest from the region, but likely gains in areas suitable for temperate forest, prairie–forest border, and prairie. The analysis also showed that protected areas in the region will most likely lose most or all of the area, 18,692 km2, currently climatically suitable for boreal forest. This would represent an enormous conservation loss. However, conversely, the area climatically suitable for prairie and prairie–forest border within protected areas would increase up to 12.5 times the currently suitable 1775 km2. Conclusions: These results suggest that retaining boreal forest in potential refugia where it currently exists and facilitating transition of some forests to prairie, oak savanna, and temperate forest should both be conservation priorities in the northern part of the region.
description: Data included here are the R code used to process the publicly available CHELSA data (see publications for citation) into the biome-climate envelope product (as .R files and .txt files) and the climate-biome envelope product itself (as .tif files).
DOI: 10.13020/p338-vx49
title: Internal Loading in Stormwater Ponds as a Phosphorus Source to Downstream Waters Dataset

description: Stormwater ponds remove phosphorus through sedimentation before releasing captured water downstream. Internal loading can impair net phosphorus removal but is understudied in these highly modified systems. Using a combination of methods, we assessed the prevalence and potential causes of sediment phosphorus release in urban ponds. In a three-year, 98-pond dataset, nearly 40% of ponds had median water column total phosphorus concentrations exceeding the 95% confidence interval for runoff values (0.38 mg/L), suggesting widespread internal loading. In a subsequent intensive monitoring study of four ponds, strong stratification prevented spring and summer diurnal mixing, resulting in persistent hypolimnion anoxia (<1 mg/L dissolved oxygen). Incubated sediment cores from seven ponds demonstrated high anoxic phosphorus release. Sediment analysis revealed high labile organic and redox-sensitive phosphorus fractions with release potential at anoxia onset. Our analyses suggest phosphorus accumulated in stormwater ponds is highly sensitive to internal loading, reducing net removal and contributing to downstream eutrophication.
description: This dataset supports the journal article "Internal Loading in Stormwater Ponds as a Phosphorus Source to Downstream Waters" by Taguchi et al. (Submitted).
Included are water quality field data, laboratory sediment phosphorus release experiment data, and laboratory sediment phosphorus fractionation data.
This work is licensed under a Creative Commons Attribution 4.0 International License.
The RPBCWD 98-Pond Dataset was produced by the Riley Purgatory Bluff Creek Watershed District and not the dataset authors. Contact www.RPBCWD.org for further information.
DOI: 10.13020/2evx-7a87
title: Data supporting “Data Sharing Readiness in Academic Institutions” Version 1

description: To address how the academic landscape for data repository and curation services changed since 2017 Spec Kit for Data Curation (Hudson-Vitale et al., 2017a), we used website content analysis to better understand data repository services in academic research libraries. Of the 124 ARL institutions we chose to focus on academic institutions and therefore excluded 10 civic libraries. For each of the remaining 114 ARL institutions we asked four research questions: Do they support data sharing via data repository services? How many datasets did they hold as of January 2020?  What digital repository software platform was in use?  How do our results compare with the 2017 SPEC Kit data (Hudson-Vitale et al., 2017b). 
description: To address how has the academic landscape for data repository and curation services changed we used website content analysis to better understand data repository services in academic research libraries, building on the 2017 ARL Spec Kit for Data Curation (Hudson-Vitale et al., 2017a). Of the 124 ARL institutions we chose to focus on academic institutions, and therefore excluded 10 civic libraries. For each of the remaining 114 ARL institutions we asked four research questions: Do they support data sharing via data repository services? How many datasets did they hold as of January 2020? What digital repository software platform was in use? How do our results compare with the 2017 ARL SPEC Kit data.
description: One CSV datafile and a readme.txt explaining the columns used as well as the data collection methodology. Version 1.0 is the original data collected by the authors. Any subsequent versions may include corrections by repository owners, as invited by the related publication.
DOI: 10.13020/qkvy-ys36
title: Data for: Anomalous outbreaks of an invasive defoliator and native bark beetle facilitated by warm temperatures, changes in precipitation, and interspecific interactions

description: Data were analyzed to quantify spatiotemporal patterns of two biotic disturbance agents, the invasive larch casebearer (Coleophora laricella Hübner) and native eastern larch beetle (Dendroctonus simplex LeConte), on eastern larch (Larix laricina (Du Roi) K. Koch)
DOI: 10.13020/d65m4p
title: Data from: The Unreasonable Effectiveness of Convolutional Neural Networks in Population Genetic Inference

description: Large neural network training data sets.  The corresponding code for training can be found here: https://github.com/flag0010/pop_gen_cnn
Both the data sets and code are associated with this paper: https://www.biorxiv.org/content/early/2018/05/31/336073
description: Each file is a numpy "npz" file.  More details here: https://docs.scipy.org/doc/numpy/reference/generated/numpy.savez.html
And contains separate test, validate, and training data sets, for both the input data and response.
DOI: 10.13020/vmd2-pa76
title: The impact of the COVID-19 pandemic on social isolation in older adults with vision loss or hearing loss

description: We study the interaction between knots in nanochannel-confined DNA molecules using a nanofluidic "knot factory" device for knot generation. The two-knot interaction data for the article is published as "Interactions between two knots in nanochannel-confined DNA molecules" in Journal of Chemical Physics. The data includes DNA images after two-knot generation and all the data used to generate the figures in the article.
description: MATLAB codes, figure data, DNA images
DOI: 10.13020/sat9-xx53
title: Videos for Cereal Crops in a Wind Tunnel 

description: 92 videos analyzed for "A wind tunnel analysis of cereal drag coefficients and stem bending". Scripts for analysis, including data obtained for the videos, is available online at https://github.com/Hortus/windtunnel_video_analysis.
description: Compressed .mp4 videos of plant wind tunnel tests captured with a Canon EOS 5D camera with an Ultrasonic EFS 60 mm lens with a maximum aperture of f/1.5. Videos taken at the University of Minnesota Saint Anthony Falls Laboratory Wind Tunnel.
DOI: 10.13020/d6wg6k
title: Minneapolis Safety In Numbers Investigation Data

description: The data consist of three publicly-available (but not simple to obtain) datasets procured from the City of Minneapolis and an additional spatial reference layer:

1) Turning Movement Counts (TMCs) at select intersections in Minneapolis between 1993 and 2014, broken down by vehicle or user type.
2) Most recently updated Average Annual Daily Traffic (AADT) levels on select street segments in Minneapolis; latest dates range from 2007 to 2014.
3) Crash reports data, from 2000 to 2013.
4) Shapefile of Minneapolis intersections. These points are based on OpenStreetMap street centerlines and provide locations for  intersections observed in the turning movement count data.

These datasets were leveraged in research performed for the Roadway Safety Institute at the University of Minnesota's Center for Transportation Studies. The associated project information page is located here: http://www.roadwaysafety.umn.edu/research/search/projectdetail.html?id=2015038
DOI: 10.13020/d6c88m
title: Data and R Code for Analyses in "Grassland birds demonstrate delayed response to large-scale tree removal in central North America"

description: These files contain R code and data required for analsyes detailed within "Grassland birds demonstrate delayed response to large-scale tree removal in central North America" in the Journal of Applied Ecology. The lead author wrote this code to analyze multi-year point count data collected in west-central Minnesota. The purpose of the study was to assess the success of habitat restoration activities aimed at removal of encroaching trees and shrubs.
description: The csv file documents the species observed at various point count stations in 14 Waterfowl Production Area sites. Measurements about the surrounding vegetation were included. Each of the 18493 rows is a record for a particular SPECIES observed at specified time and location. The R code file runs on R and imports the CSV file. The R code was written in R version 3.1.2.
DOI: 10.13020/a9w0-8k04
title: APAL 2019: Postural Data, Game Performance, and Subjective Responses of Cybersickness in Virtual Reality Head-Mounted Displays 

description: Cybersickness is a subset of motion sickness and is experienced by users after they are immersed in a computer-generated virtual environment. Prior motion sickness research has shown that individuals that become motion sick display distinct kinematic patterns that differ from those that do not become sick. For this reason, kinematic data were collected before virtual reality (VR) exposure, and during exposure. Following exposure, some participants reported motion sickness. Subjects that reported motion sickness were classified into the sickness group, while those that did not report any symptoms were classified into the well group. This data set includes the collected kinematic data, subjective responses on the simulator sickness questionnaire, and game performance data. Kinematic data was collected before exposure via a force plate, and during exposure using a Polhemus Electromagnetic Tracker.
description: Cybersickness is a subset of motion sickness and is experienced by users after they are immersed in a computer-generated virtual environment. Prior motion sickness research has shown that individuals that become motion sick display distinct kinematic patterns that differ from those that do not become sick. For this reason, kinematic data were collected before virtual reality (VR) exposure, and during exposure. Following exposure, some participants reported motion sickness. Subjects that reported motion sickness were classified into the sickness group, while those that did not report any symptoms were classified into the well group. This data set includes the collected kinematic data, subjective responses on the simulator sickness questionnaire, and game performance data. Kinematic data was collected before exposure via a force plate, and during exposure using a Polhemus Electromagnetic Tracker. The data are shared to follow guidelines as required by the journals we are submitting to.
description: The data files included are as follows: Demographic data, Kinematic data before virtual environment exposure, Kinematic data during virtual environment exposure, Game Performance Data, and Subjective Responses.
DOI: 10.13020/d6rq5c
title: Supplemental Materials to Hierarchical Modeling and Analysis for Spatial Data, 2nd Edition

description: These files are the supplemental materials referred to in the 2nd edition of Hierarchical Modeling and Analysis for Spatial Data. This record is complete with datasets, R code, and WinBUGS. There is a csv file that provides a map for page number and associated file. If there is no page number, then there is a section number or short description.
DOI: 10.13020/d63m5f
title: Data for "A Cell Proliferation and Inflammatory Signature is Induced by Lawsonia intracellularis Infection in Swine"

description: Lawsonia intracellularis causes porcine proliferative enteropathy. This is an enteric disease characterized by thickening of the wall of the ileum that leads to decreased growth and diarrhea of animals. In this study, we investigated the host response to L. intracellularis infection by performing transcriptomic and pathway analysis of intestinal tissue in groups of infected and non-infected animals at 14, 21 and 28 days post challenge. The data deposited here are BAM files.
description: The data deposited here is of samples from two treatment groups. Groups of pigs were either infected or non-infected with Lawsonia intracellularis and euthanized at 14, 21 and 28 days post infection. In total there were 18 animals per treatment and 6 animals were euthanized by treatment by timepoint. Ileum samples collected were immediately placed in RNAlater (ThermoFisher) and total RNA was extracted using the RNeasy Plus Universal Mini Kit (Qiagen). RNA quantity and quality were assessed using RiboGreen RNA and Agilent Analysis system, respectively. Samples that passed quality metrics were used to create a cDNA library for sequencing using Illumina Library Creation. Samples from each pig were individually sequenced using the Illumina HiSeq 2500 sequencer using 50 base paired-end reads and 20 million reads per sample. The Illumina sequence files were processed using a pipeline developed by the University of Minnesota Informatics Institute. Briefly, FastQ files were trimmed via trimmomatic and mapping was performed via TopHAT (v2.0.13) using bowtie (v2.2.4.0). The Sus Scrofa 3.0 (susScr3) genome was used and gene annotation was performed using Ensembl from the same genome build.
DOI: 10.13020/d6bt3x
title: Access Across America: Transit 2016 Data

description: These data were created as part of a study that examined the accessibility to jobs by transit in 49 of the 50 largest (by population) metropolitan areas in the United States. It is the most detailed evaluation to date of access to jobs by transit, and it allows for a direct comparison of the transit accessibility performance of America's largest metropolitan areas. These data are part of a longitudinal study; Access Across America: Transit 2015 data are available at https://conservancy.umn.edu/handle/11299/183801. Access Across America: Transit 2014 data are available at http://hdl.handle.net/11299/168064.
description: Downloads are available for individual metropolitan regions, as well as states, in CSV or Shapefile format. Combined ZIP files containing the data for all metropolitan regions are also available in CSV and Shapefile format, and are labeled as "All Metropolitan Regions." A combined ZIP file containing the data for all State regions is available only in CSV format.
DOI: 10.13020/93r8-zk72
title: Data and Scripts for manuscript "Improving predictions of range expansion for invasive species using joint species distribution models and surrogate co-occurring species"

description: This data can be used to replicate the results from the manuscript "Improving predictions of range expansion for invasive species using joint species distribution models and surrogate co-occurring species". Included are R scripts and occurence datasets for running Generalized Boosted Models (GBM) species distribution models for the invasive species Cardamine impatiens, Celastrus orbiculatus, and Humulus japonicus. Also included are R scripts for building spatially explicit species co-occurrence matrices used for running joint species distribution models (specifically gjam models) in for plant communities in Minnesota based on the MN DNR plant releve dataset with a focus on incorporating the invasive species Cardamine impatiens, Celastrus orbiculatus, and Humulus japonicus as well as a case study for the native species Smilacina racemosa. The exact spatial location of each releve has been changed to a gridded position in order to protect the exact location. Raw releve data must be obtained from the MN DNR.
description: The data includes occurrence records for Cardamine impatiens, Celastrus orbiculatus, Humulus japonicus, and Smilacina racemosa downloaded from EDDMaps on 7 Sept 2020. Also included are spatially explicit species co-occurrence presence/absences matrices for Cardamine impatiens, Celastrus orbiculatus, Humulus japonicus, and Smilacina racemosa.
DOI: 10.6084/m9.figshare.19326131
title: Nasturtium_flowers.xlsx

description: Abiotic stress in Tropaeolum majus flowers
DOI: 10.6084/m9.figshare.19326131.v1
title: Nasturtium_flowers.xlsx

description: Abiotic stress in Tropaeolum majus flowers
DOI: 10.13020/hvr3-bg02
title: Suppressing The Ferroelectric Switching Barrier in Hybrid Improper Ferroelectrics

description: Integration of ferroelectric materials in novel technological applications requires low coercive  field materials, and consequently, design strategies to reduce the ferroelectric switching barriers. In this first principles study, we show that biaxial strain, which has a strong e ect on the ferroelectric ground
states, can also be used to tune the switching barrier of hybrid improper ferroelectric Ruddlesden-Popper oxides. We identify the region of the strain-tolerance factor phase diagram where this intrinsic barrier is suppressed, and show that it can be explained in relation to strain induced phase transitions to nonpolar phases.
description: There are two main parts in this work: 1. Strain-tolerance Ruddlesden-Popper perovskite oxides phase diagram. All the density-functional theory based relaxed crystal structures, used in the main text, are included. 2. Polarization switching paths of Ruddlesden-Popper perovskite oxides. We also include Python scripts that are used to analyse the energy, polarization and octahedral rotation angle of a specific crytal structure.