cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5047858.v1
title: Novel <i>PNKP</i> mutation in siblings with ataxia-oculomotor apraxia type 4

description: The phenotypic and genetic spectrum of ataxia with oculomotor apraxia (AOA) disorders is rapidly evolving and new technologies such as genetic mapping using whole exome sequencing reveal subtle distinctions among the various subtypes. We report a novel <i>PNKP</i> mutation in two siblings with progressive ataxia, abnormal saccades, sensorimotor neuropathy and dystonia consistent with the AOA type 4 phenotype. Laboratory evaluation revealed hypoalbuminemia, hypercholesterolemia with elevated LDL, elevated IgE levels and normal α fetoprotein levels. Eye movement examination demonstrated a marked saccade initiation defect with profound hypometric horizontal saccades. Vertical saccades were also affected but less so. Also present were conspicuous thrusting head movements when attempting to change gaze, but rather than an apraxia these were an adaptive strategy to take advantage of an intact vestibulo-ocular reflex to carry the eyes to a new target of interest. This is demonstrated in accompanying videos.
DOI: 10.6084/m9.figshare.5047843
title: Supplementary Material for: Vitamin D and Albuminuria in Youth with and without Type 1 Diabetes

description: <i>Background/Aims:</i> In adults, lower vitamin D has been associated with increased albuminuria. This association has not been extensively studied in youth with or without type 1 diabetes. <i>Methods:</i> We examined the cross-sectional association between vitamin D and albuminuria (urine albumin to creatinine ratio ≥30 mg/g) in 8,789 participants of the National Health and Nutrition Survey 2001–2006 (NHANES), who were 6–19 years old. Further, we examined the association between vitamin D and albuminuria in 938 participants from the SEARCH Nutritional Ancillary Study (SNAS), a longitudinal cohort of youth with type 1 diabetes. <i>Results:</i> Of the NHANES participants, 5.3, 19.5, and 53.7% had vitamin D levels &lt;30, 50 and 80 nmol/L, respectively. Albuminuria was present in 12.8% and was more common in younger children, females, non-Hispanic whites, non-obese children, and children with hypertension. After adjustments, there was no association between vitamin D and albuminuria. Among the SNAS participants with type 1 diabetes, we also found no association between baseline vitamin D and subsequent albuminuria in unadjusted or adjusted analyses. <i>Conclusion:</i> We did not find an association between serum vitamin D and albuminuria in either non-diabetic youth or those with type 1 diabetes. Further research is needed to more fully understand this relationship.
DOI: 10.6084/m9.figshare.5047855.v1
title: Privacion_valencia

description: Datos de privación de la ciudad de valencia en ZIP<br>
DOI: 10.6084/m9.figshare.5047849.v1
title: When populists become popular: comparing Facebook use by the right-wing movement Pegida and German political parties

description: Previous research has acknowledged the use of social media in political communication by right-wing populist parties and politicians. Less is known, however, about its pivotal role for right-wing social movements which rely on personalized messages to mobilize supporters and challenge the mainstream party system. This paper analyzes online political communication by the right-wing populist movement Pegida and German political parties. We investigate to which extent parties attract supporters of Pegida, to which extent they address topics similar to Pegida and whether their topic use has become more similar over a period of almost two years. The empirical analysis is based on Facebook posts by main accounts and individual representatives of these political groups. We first show that there are considerable overlaps in the audiences of Pegida and the new challenger in the party system, AfD. Then we use topic models to characterize topic use by party and surveyed crowdworkers to which extent they perceive the identified topics as populist communication. The results show that while Pegida and AfD talk about rather unique topics and smaller parties engage to varying degrees with the topics populists emphasize, the two governing parties CDU and SPD clearly deemphasize those. Overall, the findings indicate that the considerable attention devoted to populist actors and shifts in public opinion due to the refugee crisis have left only moderate marks in political communication within the mainstream party system.
DOI: 10.6084/m9.figshare.5047789
title: Simple and approximate estimation of future precipitation return-values

description: R-binary used in the analysis of dependency of preciptation intensity to temperture. R and R mark-down scripts. <br>
DOI: 10.6084/m9.figshare.5047783
title: Impact of misspecified residual correlation structure on the parameter estimates in a shared spatial frailty model

description: In practice, survival data are often collected over geographical regions. Shared spatial frailty models have been used to model spatial variation in survival times, which are often implemented using the Bayesian Markov chain Monte Carlo method. However, this method comes at the price of slow mixing rates and heavy computational cost, which may render it impractical for data-intensive application. Alternatively, a frailty model assuming an independent and identically distributed (iid) random effect can be easily and efficiently implemented. Therefore, we used simulations to assess the bias and efficiency loss in the estimated parameters, if residual spatial correlation is present but using an iid random effect. Our simulations indicate that a shared frailty model with an iid random effect can estimate the regression coefficients reasonably well, even with residual spatial correlation present, when the percentage of censoring is not too high and the number of clusters and cluster size are not too low. Therefore, if the primary goal is to assess the covariate effects, one may choose the frailty model with an iid random effect; whereas if the goal is to predict the hazard, additional care needs to be given due to the efficiency loss in the parameter(s) for the baseline hazard.
DOI: 10.6084/m9.figshare.5047783.v1
title: Impact of misspecified residual correlation structure on the parameter estimates in a shared spatial frailty model

description: In practice, survival data are often collected over geographical regions. Shared spatial frailty models have been used to model spatial variation in survival times, which are often implemented using the Bayesian Markov chain Monte Carlo method. However, this method comes at the price of slow mixing rates and heavy computational cost, which may render it impractical for data-intensive application. Alternatively, a frailty model assuming an independent and identically distributed (iid) random effect can be easily and efficiently implemented. Therefore, we used simulations to assess the bias and efficiency loss in the estimated parameters, if residual spatial correlation is present but using an iid random effect. Our simulations indicate that a shared frailty model with an iid random effect can estimate the regression coefficients reasonably well, even with residual spatial correlation present, when the percentage of censoring is not too high and the number of clusters and cluster size are not too low. Therefore, if the primary goal is to assess the covariate effects, one may choose the frailty model with an iid random effect; whereas if the goal is to predict the hazard, additional care needs to be given due to the efficiency loss in the parameter(s) for the baseline hazard.
DOI: 10.6084/m9.figshare.5047753
title: lung 4D-CT data sets

description: 7 lung 4D-CT data sets. Detailed information of the data sets can be found in Read me file.
DOI: 10.6084/m9.figshare.5047753.v1
title: lung 4D-CT data sets

description: 7 lung 4D-CT data sets. Detailed information of the data sets can be found in Read me file.
DOI: 10.4225/03/592b73c2e911c
title: Raw data for manuscript "The Parenting to Reduce Adolescent Depression and Anxiety Scale: Assessing parental concordance with parenting guidelines for the prevention of adolescent depression and anxiety disorders". PeerJ, accepted 29th August 2017.

description: Raw data file for manuscript titled: <i><br></i>"The Parenting to Reduce Adolescent Depression and Anxiety Scale: Assessing parental concordance with parenting guidelines for the prevention of adolescent depression and anxiety disorders". <br>PeerJ, accepted 29th August 2017.
DOI: 10.6084/m9.figshare.5047690
title: Dataset for the paper Hyperbolic Discounting and Personality

description: Dataset for the paper Hyperbolic Discounting and Personality
DOI: 10.6084/m9.figshare.5047690.v1
title: Dataset for the paper Hyperbolic Discounting and Personality

description: Dataset for the paper Hyperbolic Discounting and Personality
DOI: 10.6084/m9.figshare.5047669
title: Nicrophorus clypeal membrane data

description: Clypeal membrane and body sizes for Nicrophorus carolinus.<br>
DOI: 10.6084/m9.figshare.5047675
title: A methodological guide to using and reporting on interviews in conservation science research (supplementary material)

description: Protocol used as part of the structured review, and results of review, used to assess whether interviews were being used carefully, and reported on clearly, in conservation research papers
DOI: 10.6084/m9.figshare.5047669.v1
title: Nicrophorus clypeal membrane data

description: Clypeal membrane and body sizes for Nicrophorus carolinus.<br>
DOI: 10.6084/m9.figshare.5047660
title: Toy Choice Meta-analysis Data Table 1a

description: This is the data related to Table 1a of the Toy Choice in Children Meta-analysis by Barry, Fischer & Todd
DOI: 10.6084/m9.figshare.5047663
title: Toy Choice Meta-analysis Data Table 1b

description: This is the data related to table 1b of the toy choice meta-analysis by Barry, Fischer & Todd
DOI: 10.6084/m9.figshare.5047675.v1
title: Appendices for Methods in Ecology and Evolution interviews paper

description: Protocol used as part of the structured review, and results of review, used to assess whether interviews were being used carefully, and reported on clearly, in conservation research papers
DOI: 10.6084/m9.figshare.5047663.v1
title: Toy Choice Meta-analysis Data Table 1b

description: This is the data related to table 1b of the toy choice meta-analysis by Barry, Fischer & Todd
DOI: 10.6084/m9.figshare.5047675.v3
title: A methodological guide to using and reporting on interviews in conservation science research (supplementary material)

description: Protocol used as part of the structured review, and results of review, used to assess whether interviews were being used carefully, and reported on clearly, in conservation research papers
DOI: 10.6084/m9.figshare.5047600
title: altmetrictop1002015.xlsx

description: lisds
DOI: 10.6084/m9.figshare.5047600.v1
title: altmetrictop1002015.xlsx

description: lisds
DOI: 10.6084/m9.figshare.5047501
title: s1.docx, s2.dox Xiang-Nan Jiang

description: Primers for the detection of ALK fusion transcripts and <b>summary of immunohistochemical findings</b>
DOI: 10.6084/m9.figshare.5047459
title: Data tables and graphs from study: 'The effect of intracerebroventricular administration of orexin receptor type 2 antagonist on pentylenetetrazol-induced kindled seizures and anxiety in rats'

description: This file set contains measurement data, statistical analysis and graphs of latency periods and duration times of epileptiform seizures in rats treated with orexin antagonist TCS OX2 29. See below for the article abstract background.<br>Files are in .pzf format; proprietary editing software and a free viewer are available via GraphPad: http://graphpad.com/support/faqid/788/<br>Article abstract: Background: Current antiepileptic drugs are not able to prevent recurrent seizures in all patients. Orexins are excitatory hypothalamic neuropeptides that their receptors (OX1 and OX2) are found almost in all major regions of the brain. Pentylenetetrazol (PTZ)- induced kindling is a known experimental model for epileptic seizures. The purpose of this study was to evaluate the effect of OX2 receptor antagonist (TCS OX2 29) on seizures and anxiety-like behaviors of PTZ-kindled rats. In this research we used orexin receptor type 2 antagonist intracerebroventricular injections to investigate its effect on the pentylenetetrazol-induced kindled seizures and anxiety behaviors in Wistar rats.
DOI: 10.6084/m9.figshare.5047459.v1
title: Data tables and graphs from study: 'The effect of intracerebroventricular administration of orexin receptor type 2 antagonist on pentylenetetrazol-induced kindled seizures and anxiety in rats'

description: This file set contains measurement data, statistical analysis and graphs of latency periods and duration times of epileptiform seizures in rats treated with orexin antagonist TCS OX2 29. See below for the article abstract background.<br>Files are in .pzf format; proprietary editing software and a free viewer are available via GraphPad: http://graphpad.com/support/faqid/788/<br>Article abstract: Background: Current antiepileptic drugs are not able to prevent recurrent seizures in all patients. Orexins are excitatory hypothalamic neuropeptides that their receptors (OX1 and OX2) are found almost in all major regions of the brain. Pentylenetetrazol (PTZ)- induced kindling is a known experimental model for epileptic seizures. The purpose of this study was to evaluate the effect of OX2 receptor antagonist (TCS OX2 29) on seizures and anxiety-like behaviors of PTZ-kindled rats. In this research we used orexin receptor type 2 antagonist intracerebroventricular injections to investigate its effect on the pentylenetetrazol-induced kindled seizures and anxiety behaviors in Wistar rats.
DOI: 10.6084/m9.figshare.5047423.v2
title: Additional file 1: of Atp8 is in the ground pattern of flatworm mitochondrial genomes

description: Mitochondrial genome sequence from the assembled nuclear genome of Macrostomum lignano [11]. (TXT 14Â kb)
DOI: 10.6084/m9.figshare.5047414.v2
title: Additional file 11: of Atp8 is in the ground pattern of flatworm mitochondrial genomes

description: atp8 alignment matrix with triclads (for details see Additional file 9). (TXT 4Â kb)
DOI: 10.6084/m9.figshare.5047405.v2
title: Additional file 10: of Atp8 is in the ground pattern of flatworm mitochondrial genomes

description: atp8 alignment matrix without triclads (for details see Fig.Â 4). (TXT 1Â kb)
DOI: 10.6084/m9.figshare.5047069
title: Commensal microbiota modulate gene expression in the skin

description: The skin harbors complex communities of resident microorganisms, yet little is known of their physiological roles and the molecular mechanisms that mediate cutaneous host-microbe interactions. Here, we profiled skin transcriptomes of mice reared in the presence and absence of microbiota to elucidate the range of pathways and functions modulated in the skin by the microbiota. With this foundational approach, we establish a critical resource for understanding the genome-wide implications of microbially-mediated gene expression in the skin and emphasize prospective ways in which the microbiome contributes to skin health and disease.<br>In this dataset, files ending in *.html include R scripts for data analysis and visualization that utilize the additional supporting files. All corresponding sequence data and gene expression counts have been deposited in NCBI GEO under study GSE98877.
DOI: 10.6084/m9.figshare.5046967
title: *OLD*AIF

description: Arterial input function (AIF) extracted from DCE-MRI and required for pharmacokinetic modelling of tumors are provided.
DOI: 10.6084/m9.figshare.5047069.v1
title: Commensal microbiota modulate gene expression in the skin

description: The skin harbors complex communities of resident microorganisms, yet little is known of their physiological roles and the molecular mechanisms that mediate cutaneous host-microbe interactions. Here, we profiled skin transcriptomes of mice reared in the presence and absence of microbiota to elucidate the range of pathways and functions modulated in the skin by the microbiota. With this foundational approach, we establish a critical resource for understanding the genome-wide implications of microbially-mediated gene expression in the skin and emphasize prospective ways in which the microbiome contributes to skin health and disease.<br>In this dataset, files ending in *.html include R scripts for data analysis and visualization that utilize the additional supporting files. All corresponding sequence data and gene expression counts have been deposited in NCBI GEO under study GSE98877.
DOI: 10.6084/m9.figshare.5046964
title: Science paper, External Database 2

description: External Database 2. Data used for Phanerozoic drill-hole size and prey size analyses.<br>Associated with paper:A.A. Klompmaker, M. Kowalewski, J.W. Huntley, S. Finnegan. 2017. Increase in predator-prey size ratios throughout the Phanerozoic history of marine ecosystems. Science.<br>
DOI: 10.6084/m9.figshare.5046967.v1
title: Arterial Input Function

description: Arterial input function (AIF) extracted from DCE-MRI and required for pharmacokinetic modelling of tumors are provided.
DOI: 10.6084/m9.figshare.5046949
title: Science paper, External Database 1

description: External Database 1. Data used for drill-hole size and predator size analyses of primarily extant drilling taxa.<br>Associated with paper: A.A. Klompmaker, M. Kowalewski, J.W. Huntley, S. Finnegan. 2017. Increase in predator-prey size ratios throughout the Phanerozoic history of marine ecosystems. Science.
DOI: 10.6084/m9.figshare.5046955
title: Oxygen Deprivation Influences the Survival of Listeria monocytogenes in Gerbils

description: Raw sequencing data and mapping files
DOI: 10.6084/m9.figshare.5046964.v1
title: Science paper, External Database 2

description: External Database 2. Data used for Phanerozoic drill-hole size and prey size analyses.<br>Associated with paper:A.A. Klompmaker, M. Kowalewski, J.W. Huntley, S. Finnegan. 2017. Increase in predator-prey size ratios throughout the Phanerozoic history of marine ecosystems. Science.<br>
DOI: 10.6084/m9.figshare.5046949.v1
title: Science paper, External Database 1

description: External Database 1. Data used for drill-hole size and predator size analyses of primarily extant drilling taxa.<br>Associated with paper: A.A. Klompmaker, M. Kowalewski, J.W. Huntley, S. Finnegan. 2017. Increase in predator-prey size ratios throughout the Phanerozoic history of marine ecosystems. Science.
DOI: 10.6084/m9.figshare.5046877
title: Differences between Journals and Years in the Proportions of Students, Researchers and Faculty Registering Mendeley Articles - Figures

description: Figures for 36 monodisciplinary journals showing average (geometric mean) numbers of readers and citations and a breakdown of reader types by year.<br>Taken from an article under review with abstract:This article contains two investigations into Mendeley reader counts with the same dataset. Mendeley reader counts provide evidence of early scholarly impact for journal articles, but reflect the reading of a relatively young subset of all researchers. To investigate whether this age bias is constant or varies by narrow field and publication year, this article compares the proportions of student, researcher and faculty readers for articles published 1996-2016 in 36 large monodisciplinary journals. In these journals, undergraduates recorded the newest research and faculty the oldest, with large differences between journals. The existence of substantial differences in the composition of readers between related fields points to the need for caution when using Mendeley readers as substitutes for citations for broad fields. The second investigation shows, with the same data, that there are substantial differences between narrow fields in the time taken for Scopus citations to be as numerous as Mendeley readers. Thus, even narrow field differences can impact on the relative value of Mendeley compared to citation counts.<br>
DOI: 10.6084/m9.figshare.5046877.v2
title: Differences between Journals and Years in the Proportions of Students, Researchers and Faculty Registering Mendeley Articles - Figures

description: Figures for 36 monodisciplinary journals showing average (geometric mean) numbers of readers and citations and a breakdown of reader types by year.<br>Taken from an article under review with abstract:This article contains two investigations into Mendeley reader counts with the same dataset. Mendeley reader counts provide evidence of early scholarly impact for journal articles, but reflect the reading of a relatively young subset of all researchers. To investigate whether this age bias is constant or varies by narrow field and publication year, this article compares the proportions of student, researcher and faculty readers for articles published 1996-2016 in 36 large monodisciplinary journals. In these journals, undergraduates recorded the newest research and faculty the oldest, with large differences between journals. The existence of substantial differences in the composition of readers between related fields points to the need for caution when using Mendeley readers as substitutes for citations for broad fields. The second investigation shows, with the same data, that there are substantial differences between narrow fields in the time taken for Scopus citations to be as numerous as Mendeley readers. Thus, even narrow field differences can impact on the relative value of Mendeley compared to citation counts.<br>
DOI: 10.6084/m9.figshare.5046937.v1
title: Supplemental material for: Characterization of Legionella from watersheds in British Columbia, Canada

description: Supplemental material for the paper: Characterization of Legionella from watersheds in British Columbia, Canada. Contains Tables S1-S3 and Figures S1-S3.
DOI: 10.6084/m9.figshare.5046817
title: Graham_et_al_Biogeosciences

description: Associated with publication: Graham et al. JGR Biogeosciences (2017)