cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15151/esrf-es-1922313570
title: Fast Access at Beamline ID19: Microtomography ("resubmission")

description: The experimental programme at beamline ID19 underwent tremendous changes in the more than 20 years of operation: starting from Bragg diffraction
topography (already with a substantial contribution of in situ experiments), the beamline pioneered hard X-ray phase contrast microtomography in routine user
application, later coupled with polychromatic illumination to exploit hard X-rays up to 250 keV as well as short exposure times. Here, we propose an access route
for routine microtomography which is fast, i.e. can be made available on short terms, and requires minimal overheads for the beamline staff. The basic idea is to
deploy the robotic sample changer of the beamline which has already proven to be a useful tool during the pandemic where users remotely scanned and changed
samples. It can be easily installed, with samples pre-mounted from the users loaded and made available in non-used evening and night shifts in a remote manner
exactly like it was done during the pandemic.
DOI: 10.15151/esrf-es-1936025383
title: Paleoecology across the French Carboniferous-Permian boundary revealed by 3D exploration of coprolites

description: Fossilised faeces (coprolites) are overlooked in palaeontology but they reveal crucial information on the ecology and evolution of the animals that produced
them and on their ecological and environmental interactions. Coprolites yield micro-remains of various digested species and provide unique insights into
the paleofauna, paleoenvironment and trophic webs. The Carboniferous-Permian transition records shifts from humid to arid global climates in continental
environments (including lakes). However, it is still unclear how life has adapted to these changes. Coprolites from lacustrine deposits of French continental basins
will be studied using high-resolution methodologies (PPC-SRμCT) to analyse their content and internal structure. The detailed 3D reconstructions of these Permo-
Carboniferous coprolites produced by continental animals (freshwater fish or terrestrial tetrapods living in or around the lake) will allow us to better understand this
important ecological turnover.
DOI: 10.15151/esrf-es-1773212283
title: Munich Crystallography BAG

description: The diverse groups of the Munich Crystallography BAG study a far range of subjects, reaching from structural aspects of fundamental cellular processes - such as RNA processing, protein folding and degradation, DNA repair, chromatin remodelling, enzymes - to the design of foldamers. The research groups are located at the LMU and TUM universities in Munich, at the Max-Planck-Institute of Biochemistry, Martinsried, and the Helmholtz Center, Neuherberg. Out-groups are located at the universities in Darmstadt and Ulm, Germany. The research groups use X-ray crystallography, single-particle cryo-EM, SAXS, NMR and HDX and XL-MS mass-spectrometry for structural studies.
DOI: 10.15151/esrf-es-1773242814
title: PROTEINS RELATED TO PATHOGENESIS OF DISEASES, VIRAL PROTEINS, CELL DIVISION, SIGNALLING AND CHROMATIN PROCESSES

description: The outstanding research questions of our BAG focus on proteins and their complexes involved in a variety of processes, ranging from cell homeostasis (from gene regulation to folding quality control, from energy metabolism to signal transduction) to communication and surface recognition (including trans-interactions between cell adhesion molecules, components of the extracellular matrix weaving, as well as antigen-antibody interactions for vaccine development and optimization). Key to several projects is the characterization of the mechanisms associated to enzyme function in various organisms, including bacteria, viruses, plants, animals and humans for downstream drug discovery campaigns. Emphasis is also given to research focusing on engineering protein and enzymes for future industrial applications, as well as to understand the impact of pathogenic mutations on protein structures, providing a genotype-to-molecular phenotype rationale to disease development.
DOI: 10.15151/esrf-es-1841717278
title: BAG Barcelona

description: BAG Barcelona joins 11 groups that belong to two different research institutions: the Institute of Molecular Biology of Barcelona from the Spanish Research Council (IBMB-CSIC) and the Institute for Research in Biomedicine from Barcelona (IRB Barcelona). With a long tradition of accessing the ESRF, the main subjects of research from the BAG groups include protein/DNA complexes, components of viruses, molecular machines, molecular mechanisms of proteases and other enzymes, de-novo design of protein scaffolds and development of crystallopgrahic methods. In this new period, three new research groups have joined the bag: Ferruz lab, Eckhard lab and Guerin lab. The scientific outcomes of all of the groups strongly depend on the acces to high performance beamlines from which to be able to retrieve high-quality structural data. The ESRF offers precisely this together with the exceptional support from their all their scientific staff .
DOI: 10.15151/esrf-es-1849631682
title: High-throughput time-resolved room-temperature serial crystallography on biomedically relevant proteins - towards molecular movies for biome

description: We aim to perform high-throughput (HT) dynamic structural studies on biomedically relevant proteins enabled by our technology development for time-resolved serial microcrystallography (TR-SMX) at the ESRF ID-29 microfocus beamline. Implementation of novel polymer-based sample supports (“chips”) will provide efficient sample introduction for TR-SMX measurements, serving two scientific thrusts: (1) determination of dynamic structure-function relationships in bacterial virulence factors important for intercellular pathogen infection and survival; (2) elucidation of energy-transfer structural mechanisms in a novel fluorescent protein used in sensing intercellular phenomena. Our microfluidic chips for TR-SMX will enable rapid sequential data collection from hydrated microcrystals at room temperature under optimized, protein-specific conditions. Our HT approach is expected to produce protein “molecular movies”, facilitating mechanism-based therapeutics and vaccine development.
DOI: 10.15151/esrf-es-1849618926
title: Locking of sub micron 3D printed weld morphologies via interfacial stereocomplex crystallization in Fast Scanning Chip calorimetry.

description: Incomplete macromolecular mixing and (re-)entangling across weld interfaces cause inferior weld mechanics transverse to the print direction. As solution we have proposed interfacial stereocomplex (SC) crystallization, but the increased mechanical activation energy of SC-PLA entails mechanical embrittlement. We synthesized new copolymers that upon melt crystallization give enhanced control of ductility via phase separation and interfacial SC crystallization. By combining a nanofocused beam and fast scanning chip calorimeter giving submicron spatial and msec temporal resolution, we aim to answer the question how molecular and blend composition, phase separation in the melt, and cold crystallization during heating in pre-recorded printing profiles direct morphology evolution and later mechanical performance.
DOI: 10.15151/esrf-es-1850902735
title: STRUCTURAL BASES OF REGULATION OF SKELETAL MUSCLE

description: Muscle contraction is regulated by both Ca2+ dependent thin filament activation and mechanosensing-based thick filament activation. Evidence is growing for the involvement in thick filament regulation of the cytoskeleton protein titin, which runs from the midpoint of the thick filament to the end of the sarcomere, and the myosin binding protein C (MyBP-C), which is bound to the backbone of the thick filament in the central one-third of either half filament and bridges thin and thick filaments. We use X-ray diffraction to investigate MyBP-C role in inter-filament communication and titin role in thick filament mechanosensing. The experiments, conducted in intact frog skeletal muscle fibres, exploit the finding that X-ray fine structure of myosin based reflections reports the footprints of both MyBP-C and titin and represent a testbed for future investigation on skinned fibres and whole muscles of rodent models with mutations in specific proteins.
DOI: 10.15468/dl.bq66x2
title: Occurrence Download

description: A dataset containing 115419 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-3.886099 43.3929, -3.763564 43.3929, -3.763564 43.4933, -3.886099 43.4933, -3.886099 43.3929))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 115419 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040472-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u6b6e4
title: Occurrence Download

description: A dataset containing 2347 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cunninghamia lanceolata (Lamb.) Hook."
 ]
}

 The dataset includes 2347 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040478-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27168087.v1
title: Supplementary Material for: Effect of Preoperative Geriatric Nutritional Risk Index on Prognosis in Patients after Surgery for Lower Gastrointestinal Perforation

description: Introduction: Geriatric Nutritional Risk Index (GNRI) is a reliable index derived from serum al-bumin levels, height, and weight. Although various prognostic factors have been studied, the effect of preoperative nutritional status on surgical outcomes remains unexplored. This study aimed to evaluate the efficacy of the GNRI in predicting postoperative outcomes of lower gastro-intestinal perforation. 
Methods: Eighty patients treated at our institution between January 2016 and December 2022 were retrospectively analyzed. This study primarily focused on the correlation between pre-operative GNRI and two key outcomes: postoperative hospital stay duration and 1-year mortality rate.
Results: Our findings revealed a significant association between low GNRI scores and increased 1-year mortality (Odd ratio 4.0, 95% confidence interval [CI] 1.1–16, p=0.025). Kaplan–Meier analysis and log-rank test showed that patients in the low GNRI group had markedly poorer overall survival rates than those in the high GNRI group (12-month survival rate 0.88 [95%CI: 0.75–0.95] vs. 0.65 [95%CI: 0.47–0.78]; p=0.018). Additionally, both univariate and multivariate analyses indicated that lower GNRI scores were associated with prolonged hospital stays.
Conclusion: We showed that a low GNRI score was associated with high mortality and pro-longed hospital stay after emergency surgery for lower gastrointestinal perforation.
DOI: 10.15468/dl.dk2q6g
title: Occurrence Download

description: A dataset containing 73498 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-4.539429 55.76361, -4.096181 55.76361, -4.096181 55.95431, -4.539429 55.95431, -4.539429 55.76361))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 73498 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040479-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5wz52t
title: Occurrence Download

description: A dataset containing 45738 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-3.068457 36.67971, -2.565415 36.67971, -2.565415 36.83806, -3.068457 36.83806, -3.068457 36.67971))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 45738 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040481-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yc3ww7
title: Occurrence Download

description: A dataset containing 193482 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Herpetotheres Vieillot, 1817"
 ]
}

 The dataset includes 193482 records from 303 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040476-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m95qt4
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-105.64737276462122 20.710160289232284,-105.56105601887091 20.710160289232284,-105.56105601887091 20.796477034982594,-105.64737276462122 20.796477034982594,-105.64737276462122 20.710160289232284))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sphaerocoryne coccometra (Bigelow, 1909)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040482-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27168072
title: Flipped classroom-based simulation.sav

description: Background: The integration of flipped classroom approaches with simulation in nursing education has significant potential in developing clinical skills, particularly cardiopulmonary resuscitation (CPR) skills. This innovative educational method allows millennial students to engage in self-directed learning styles. This study aimed to investigate the effects of flipped classroom -based simulation on self- confidence and satisfaction, knowledge, and CPR skills among third-year nursing students. Methods: This study was conducted using a quasi-experimental pretest-posttest design. Seniors nursing students were divided into two groups of intervention with flipped classroom -based simulation (N=38) and control with simulation based education (N=37) based on the inclusion criteria using random allocation Both groups were then compared based on the satisfaction and self- confidence scale from the simulation experience, a knowledge questionnaire, and a CPR skills checklist. Data were analyzed using descriptive statistics, independent t-tests, paired t-tests, and ANCOVA with Stata-17 software. Results: The flipped classroom -based simulation group showed significantly higher satisfaction and self-confidence from the simulation experience compared to simulation based education group (p = 0.001). Regarding the mean scores on the basic and advanced CPR skills checklist and the defibrillator skills checklist after simulation, the flipped learning group scored significantly higher than the simulation based education group (p = 0.001). Intergroup analysis using ANCOVA showed a statistically significant difference in the changes in the mean total knowledge score of CPR between the two groups (p &lt; 0.001). Conclusion: The flipped classroom based simulation approach effectively enhanced the self-confidence and satisfaction, knowledge, and CPR skills of nursing students. This innovative educational approach can be recommended as a student-centered method in nursing education for teaching clinical skills and evidence-based practices.
DOI: 10.6084/m9.figshare.27168072.v1
title: Flipped classroom-based simulation.sav

description: Background: The integration of flipped classroom approaches with simulation in nursing education has significant potential in developing clinical skills, particularly cardiopulmonary resuscitation (CPR) skills. This innovative educational method allows millennial students to engage in self-directed learning styles. This study aimed to investigate the effects of flipped classroom -based simulation on self- confidence and satisfaction, knowledge, and CPR skills among third-year nursing students. Methods: This study was conducted using a quasi-experimental pretest-posttest design. Seniors nursing students were divided into two groups of intervention with flipped classroom -based simulation (N=38) and control with simulation based education (N=37) based on the inclusion criteria using random allocation Both groups were then compared based on the satisfaction and self- confidence scale from the simulation experience, a knowledge questionnaire, and a CPR skills checklist. Data were analyzed using descriptive statistics, independent t-tests, paired t-tests, and ANCOVA with Stata-17 software. Results: The flipped classroom -based simulation group showed significantly higher satisfaction and self-confidence from the simulation experience compared to simulation based education group (p = 0.001). Regarding the mean scores on the basic and advanced CPR skills checklist and the defibrillator skills checklist after simulation, the flipped learning group scored significantly higher than the simulation based education group (p = 0.001). Intergroup analysis using ANCOVA showed a statistically significant difference in the changes in the mean total knowledge score of CPR between the two groups (p &lt; 0.001). Conclusion: The flipped classroom based simulation approach effectively enhanced the self-confidence and satisfaction, knowledge, and CPR skills of nursing students. This innovative educational approach can be recommended as a student-centered method in nursing education for teaching clinical skills and evidence-based practices.
DOI: 10.34740/kaggle/dsv/3726583
title: Rice Leaf 5 diseases
DOI: 10.15468/dl.64z8ra
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((87.34861 48.83336,82.88897 47.43636,81.57257 46.06623,80.55169 45.12595,79.50394 44.23939,78.77858 42.30509,74.62209 40.49351,73.59036 38.97405,75.01422 37.25467,80.57534 35.05171,88.07464 40.7002,93.50143 43.62851,96.34915 42.79569,91.86265 47.33592,87.34861 48.83336))",
 "TaxonKey is Quercus L."
 ]
}

 The dataset includes 63 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040483-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7eqd7f
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-105.73647804158809 20.597988384235226,-105.65016129583775 20.597988384235226,-105.65016129583775 20.684305129985564,-105.73647804158809 20.684305129985564,-105.73647804158809 20.597988384235226))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sphaerocoryne coccometra (Bigelow, 1909)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040484-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25901/02ph-m747
title: Howard Springs Flux Data Release 2024_v2
DOI: 10.5281/zenodo.13870529
title: Data from: Effects of land use change and elevation on endemic shrub frogs in a biodiversity hotspot

description: This project contains data and codes from a study investigating the effects of land use change and elevation on endemic shrub frogs in the northern Western Ghats, India. 

Species Coverage: Though the focal species in the study are Pseudophilautus amboli and Raorchestes bombayensis, the raw data also contain the following species. Duttaphrynus melanostictus, Euphlyctis sp, Hoplobatrachus tigerinus, Hydrophylax bahuvistara, Indirana chiravasi, Indirana sp, Microhyla nilphamariensis, Minervarya cepfi, Minervarya gomantaki, Minervarya sp, Nyctibatrachus petraeus, Polypedates maculatus, Pseudophilautus amboli, Ramanella variegata, Raorchestes bombayensis, Rhacophorus malabaricus, Sphaerotheca dobsonii, Uperodon mormorata, Xanthophryne tigerina

Geographic Coverage: Dodamarg and Sawantwadi Taluks of the Sindhudurg District, Maharashtra State, India. (15°40’–16°0’N; 73°51’–74°9’E)

Temporal Coverage: June, July, August, September (2022).

Field data was collected by Himanshu Lad and Ninad Gosavi.

More details about the data can be obtained from Himanshu Lad and Rohit Naniwadekar from the Nature Conservation Foundation (www.ncf-india.org).
DOI: 10.5281/zenodo.13870530
title: Data from: Effects of land use change and elevation on endemic shrub frogs in a biodiversity hotspot

description: This project contains data and codes from a study investigating the effects of land use change and elevation on endemic shrub frogs in the northern Western Ghats, India. 

Species Coverage: Though the focal species in the study are Pseudophilautus amboli and Raorchestes bombayensis, the raw data also contain the following species. Duttaphrynus melanostictus, Euphlyctis sp, Hoplobatrachus tigerinus, Hydrophylax bahuvistara, Indirana chiravasi, Indirana sp, Microhyla nilphamariensis, Minervarya cepfi, Minervarya gomantaki, Minervarya sp, Nyctibatrachus petraeus, Polypedates maculatus, Pseudophilautus amboli, Ramanella variegata, Raorchestes bombayensis, Rhacophorus malabaricus, Sphaerotheca dobsonii, Uperodon mormorata, Xanthophryne tigerina

Geographic Coverage: Dodamarg and Sawantwadi Taluks of the Sindhudurg District, Maharashtra State, India. (15°40’–16°0’N; 73°51’–74°9’E)

Temporal Coverage: June, July, August, September (2022).

Field data was collected by Himanshu Lad and Ninad Gosavi.

More details about the data can be obtained from Himanshu Lad and Rohit Naniwadekar from the Nature Conservation Foundation (www.ncf-india.org).
DOI: 10.15468/dl.5j6pz6
title: Occurrence Download

description: A dataset containing 15114 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Korea, Republic of",
 "TaxonKey is Sus Linnaeus, 1758"
 ]
}

 The dataset includes 15114 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040485-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v4kxke
title: Occurrence Download

description: A dataset containing 1465 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Phalcoboenus d'Orbigny, 1834"
 ]
}

 The dataset includes 1465 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040486-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.