cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/pgxtgv52wh
title: Data for: Salvage surgery in head and neck cancer: Does it improve outcomes?

description: Whether salvage surgery after chemoradiation in recurrent or residual head and neck cancer improves outcomes is an open question. The proponents of salvage surgery point to the multiple small, retrospective, single-center analyses performed across the globe which hint towards the efficacy of salvage surgery. The opponents on the other hand point that diseases with small volumes that are accessible without involving critical structures are usually selected for salvage surgery. This selection gives a biological advantage to patients undergoing salvage surgery over those treated with non-surgical modalities and therefore it is possible that the improved outcomes seen with salvage surgery are a result of selection bias. To answer this question we performed this analysis. This was a post hoc analysis of data from a phase 3 study comparing the efficacy of cisplatin - radiation versus Nimotuzumab-cisplatin-radiation. Patients in this study who had the recurrent or residual disease and who were eligible for salvage surgery were selected for this study. These were divided into 2 cohorts for comparison, willing for salvage surgery (n=91) and unwilling for salvage surgery(n=22). The primary endpoint was overall survival. This we thought was a better method of comparison than who underwent salvage surgery versus did not undergo salvage surgery. As some patients even who are willing for salvage surgery progress before the surgery. This biologically bad subgroup deteriorates the results of patients who did not undergo salvage surgery group. We feel this analysis is close to perfect as performing a randomized study in this setting seems unethical after observing our results. The results are in favor of salvage surgery.
DOI: 10.17632/3r4xfxdmbz
title: Data for: Dietary Behaviors and Trends of Participants in Meat Reduction and Vegan Campaigns

description: This dataset includes a longitudinal survey administered at six points over a 12 month period to participants of UK-based meat reduction and vegan campaigns, collected from July 2016 through June 2017. This portion of the dataset includes information on participants' reported consumption, previous dietary changes, and planned dietary changes. The data was collected as part of a PhD research project by Dr Trent Grassian at the University of Kent. Participant focus groups were also held alongside the survey.

The second file includes data from 6 of the campaigns in the first survey. This includes reported dietary habits and planned changes, as well as sociodemographic characteristics.
DOI: 10.17632/7smvrtffh5
title: LINF_260032500

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/jydpbt3z4d
title: TPL2.0Code

description: Tolerant Pattern Learner Algorithm based on Tolerance Rough Sets to harvest Patterns from Textual Web Sources
DOI: 10.6084/m9.figshare.27915924.v2
title: <b>dGenhancer v2</b>: A software tool for designing oligonucleotides that can trigger gene-specific Enhancement of Protein Translation.

description: Software tool designed to calculate 5’UTR properties, enabling the creation of oligonucleotides that can trigger gene-specific enhancement of protein translation.<br> An excel-based calculator - dGenhancer can be used to search for putative 5’UTR cis-acting elements, which functional activity could be determined by Gibbs energy-dependent secondary structure formation. <br> This version requires pre-calculated total Gibbs energies of the tested sequences. Prediction of total Gibbs energies (ΔG=ΔH–TΔS) of the 5’UTR structures can be performed using RNAstructure version 5.2. ΔGs are input data for final dGenhancer calculations as shown by Master A et al 2016<sup>1</sup> The algorithms of the calculator were constructed to visualize ΔG changes after <i>in silico</i> introduced single nucleotide substitutions (SNPs) of the 5’UTR sequences. These artificial SNPs differently affected overall sequence ΔGs (Gibbs energies) that were drawn by the dGenhancer to show regions where substitution can alter ΔGs the most, indicating putative <i>cis</i>-acting elements with the highest translational regulatory potential. -----------------------<br>S1 supplementary material: https://pmc.ncbi.nlm.nih.gov/articles/instance/4865139/bin/pone.0155359.s001.pdf <br>dGenhancer - previous localization: http://www.serwer1448847.home.pl/biotechnology/dGenhancer.xlsx <br>-----------------------<br>References:<br><br>1. Master A, Wójcicka A, Giżewska K, Popławski P, Williams GR, Nauman A. A Novel Method for Gene-Specific Enhancement of Protein Translation by Targeting 5'UTRs of Selected Tumor Suppressors. PLoS One. 2016 May 12;11(5):e0155359. doi: 10.1371/journal.pone.0155359. PMID: 27171412; PMCID: PMC4865139.https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0155359<b>2. Master A</b>, Wojcicka A, Nauman A. The 5’UTR-dependent enhancement of protein translation efficiency triggered by self-transfecting 3’-aminoallyl-containing oligonucleotides (aa-dG<i>oligos</i>) targeting a pool of strongly folded transcript variants of the <i>THRB</i> suppressor gene. Molecular Therapy, Volume 22, Supplement 1, S38, May 2014.<br> Abstract: https://www.cell.com/molecular-therapy-family/molecular-therapy/pdf/S1525-0016(16)35113-9.pdf Poster: https://doi.org/10.6084/m9.figshare.27894564.v1contact: adam.master.science@gmail.com
DOI: 10.6084/m9.figshare.7246082.v1
title: PCOS LPS, TLR-4 & SOCS-3 Paper - Supplementary Table 1.docx

description: <b>Supplementary Table 1. </b><i>Two-way ANOVA evaluating the effects of PCOS status (PCOS vs. control) and weight class (obese vs. lean) on </i><i>inflammation markers during the cream challenge test.</i>
DOI: 10.17632/4g2jp7kvz4
title: Data for "Their Young Bite Better: On- and Off-host Selection Pressure as Drivers for Evolutionary-Developmental Modification in Rhipicephalus ticks"

description: This work integrates quantitative morphology of basis capituli (geometric morphometrics), host-use strategy and molecular lines of evidence in a developmental context to better understand Rhipicephalus evolution.
DOI: 10.6084/m9.figshare.25855504.v1
title: ISDB Data.xlsxIndirect Self Destructive Behaviours and Health Habits

description:   
Indirect Self-Destructive Behaviours (ISDBs) cover a broad spectrum of behaviours, such as refusal to eat or drink, mishandling medication, self-mutilation, self-neglect, and noncompliance with medical prescriptions. All these actions describe harmful, life-threatening behaviours that ultimately jeopardise an individual's health, leading to premature death. Health habits can be defined as behaviours that one follows to improve and maintain one's overall mental and physical well-being. The study has explored the relationship between Indirect Self-Destructive Behaviours (ISDBs) and Health Habits. To explore this relationship, Self-Assessment: Chronic Self-Destructiveness Scale and Self-Reflection: How Do Your Health Habits Rate were administered to a sample of 100 young adults between the ages of 18-25. The study findings suggest a significant negative correlation between Indirect Self-Destructive Behaviour (ISDB) and Health Habits including eating habits. It can concluded that the impact of health habits is not limited to physical health but also has a significant impact on psychological well-being.
DOI: 10.6084/m9.figshare.28235867.v1
title: <b>Multi-Scenario Modelling Framework for Afforestation Strategies to Mitigate Runoff and Flooding Across Storm Return Periods in Tropical Large River Basins: The Upper Citarum Case</b>

description: Flooding is a recurring natural disaster in Indonesia, particularly in the Upper Citarum River Basin, causing significant damage to lives and property. This study examines the impact of afforestation on mitigating runoff, peak discharge, and flood risks under various storm conditions. Hydrological (HEC-HMS) and hydraulic (HEC-RAS) models were applied to simulate six afforestation scenarios: No Forest (NF), Medium Afforestation (MF), afforestation based on Bandung’s 2029 spatial plan (F-2029), Riverbank Afforestation (RF), spatial plan for 2029 (SP-2029), No Built-up (NB), and Land Cover 2021 (LC-2021) as the baseline. Six rainfall return periods (RP) (2, 5, 10, 20, 50, and 100 years) were generated using 32 years of maximum daily rainfall data from 11 rain stations. The results indicated that land cover changes significantly affected runoff, with urbanization increasing flood risks and afforestation improving water retention. Riverbank afforestation (RF) and reduced built-up areas (NB) were the most effective in reducing flood risks, while reduced forest cover (NF) and urban expansion (SP-2029) increased runoff and flood potential. Model validation with historical flood data revealed strong consistency in identifying flood-prone areas, particularly in Margahayu, Bojongsoang, Dayeuhkolot, and Baleendah. The prevailing flood pattern was observed in the 2- and 5-year RP scenarios, indicating frequent but less severe flood events. These findings underscore the importance of afforestation and land cover management for flood mitigation and offer valuable insights for policymakers to enhance resilience to flooding in the Upper Citarum Basin.
DOI: 10.15468/dl.m2fdsg
title: Occurrence Download

description: A dataset containing 1183 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Litoria dayi (Günther, 1897)"
 ]
}

 The dataset includes 1183 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001447-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/zh65mm3hyx
title: Mendeley supplemental tables

description: Supplemental Table 1. Association between adherence to dermatology visits every 3 months and melanoma-specific mortality (n = 10646)
Supplemental Table 2. Association between adherence to dermatology visits every 6 months and melanoma-specific mortality (n = 10419)
DOI: 10.17632/8hbjskw3xn
title: Data from the coupled detrital zircon U–Pb and Hf case study of the Sibumasu Terrane in northwest Thailand

description: This dataset is the first coupled zircon U-Pb and Hf analysis from Ordovician to Triassic sediments of the Sibumasu Terrane in northwest Thailand. This dataset includes sample imagery, a cumulative kernel density estimate used to determine a consistent age cut off for the U-Pb isotopic systems of all eight samples and the relevant analytical data tables from LA–ICP–MS (U-Pb) and Multicollector (U-Pb and Lu-Hf) instruments. Information on each specific dataset are detailed below. Both the U–Pb and Hf datasets show older Proterozoic age peaks characteristic of Gondwana and the emergence of an Indosinian source in the younger units. Our data are consistent with other published studies from Sibumasu indicating a contiguous terrane, inconsistent with composite terrane reconstructions. These results and implications are explored further in the associated Journal of Asian Earth Sciences submission, which should be cited when using this dataset. Fig. 1: Thin sections, outcrop and hand specimens of samples. Minerals present are labelled where: Qtz is quartz; Ol is olivine; L is undifferentiated lithic fragments; Bt is biotite; Mu is muscovite; Am is amphibole mainly hornblende in these samples); Pl is plagioclase; Mc is microcline and Px is pyroxene. (a) Hand specimen of RDT15_078 (b) RDT16_001 thin section image in Cross Polarised Light (XPL), (c) Hand specimen of RDT15_066, (d) RDT16_018 overview thin section image in Cross Polarised Light (XPL), (e) RDT16_008 thin section image illustrating olivine (Ol) detritus in Plane Polarised Light (PPL) (f) RDT16_008 thin section image showing olivine (Ol) detritus in XPL, (g) RDT16_019 overview thin section image in XPL, (h) RDT16_006 field location, (i) RDT16_012 field locality (j) RDT16_012 overview thin section image in XPL. Fig. 2: General geological setting for sample RDT16_012 (side road west of Khun Yuam). A) Outcrop photograph of thinly bedded cherts and shales inferred to be of Middle Triassic age (Baum et al., 1981), i.e. Mae Sariang Formation. B) Outcrop photography of well-bedded sandstones and pebbly sandstones, with interbedded shales. C) Oblique Google Earth Image showing the geology west of Khun Yuam, around Ban Pratu Muang. D) Schematic cross-section showing main geological relationships along the side road east of Ban Pratu Muang. Fig. 3: Cumulative kernel density estimate (KDE) of all eight samples' age distributions from northwest Thailand. To determine the most appropriate and precise zircon U–Pb ages for this study’s dataset, the KDE of all ±10% discordant data was used to determine the minima of the data (206Pb/238U ages between 1350–1383 Ma). It was then decided that all 206Pb/238U ages ≤1351 Ma would be used for age determination, utilising the 207Pb/206Pb age for all older grains. Table 1: Main isotopes and ratios measured using LA–ICP–MS and Multicollector Table 2: LA–ICP–MS Analytical Method Information Table 3: Lu–Hf Standards and Analytical Parameters
DOI: 10.17632/c7bj8676tk
title: Effect of Calcaneal Taping on Balance, Gait and Range of motion in Patients with Chronic Stroke

description: Purpose: The study was planned to determined the effect of calcaneal taping to improve balance, gait and ankle range of motion (ROM) in chronic stroke survivors. Methods: 18 patients with chronic stroke were taken into two groups. Group A received calcaneal taping and Group B sham taping along with conventional treatment for 3 times per week for 4 weeks. Dynamic balance were evaluated by timed up & go test(TUGT); Static balance were evaluated with balance error scoring system (BESS); Gait parameters were measured by foot print method; Ankle ROM were measured with universal goniometer. Measurements for outcomes were obtained at baseline and after the 4 weeks of intervention. Results: TUGT was improved statistical significantly (p&lt;0.05), BESS was also improved statistical significant (p&lt;0.05) and Gait parameters – Cadence, step length & stride length improved significantly (p&lt;0.05) and ankle ROM also improved statistical significant (p&lt;0.05) in group A.
DOI: 10.6084/m9.figshare.26745743.v1
title: Additional file 13 of Effects of a co-bacterial agent on the growth, disease control, and quality of ginseng based on rhizosphere microbial diversity

description: Supplementary Material 13: Table S13. Relative abundance at genus level of the top 20 fungi (%)
DOI: 10.6084/m9.figshare.12108408.v3
title: Table 1 structures

description: Molecule structures from https://pubs.acs.org/doi/10.1021/acs.jmedchem.9b02075
DOI: 10.6084/m9.figshare.10120685.v1
title: The Twitter Parliamentarian Database

description: This is the Twitter Parliamentarian Database: a database consisting of parliamentarian names, parties and twitter ids from the following countries: Austria, Belgium, France, Denmark, Spain, Finland, Germany, Greece, Italy, Malta, Poland, Netherlands, United Kingdom, Ireland, Sweden, New Zealand, Turkey, United States, Canada, Australia, Iceland, Norway, Switzerland, Luxembourg, Latvia and Slovenia. In addition, the database includes the European Parliament.<br><br>The tweet ids from the politicans' tweets have been collected from September 2017 - 31 October 2019 (more data can be added later). In compliance with Twitter's policy, we only store tweet ids, which can be re-hydrated into full tweets using existing tools. More information on how to use the database can be found in the <i>readme.txt.<br><br></i>It is recommended that you use the .csv files to work with the data, rather than the SQL tables. Information on the relations in the SQL database can be found in the <i>Database codebook.pdf. </i>
DOI: 10.17632/txxsv97xvv
title: Original Western blots

description: The data were generated to investigate the role of EDEM1 in glucose-stimultaed insulin secretion in pancreatic beta cells. We found that insulin biosynthesis and secretion are enhanced in INS-1E cells and in human islets. The ER stress of EDEM1 expressing cells is also investigated.
DOI: 10.17632/6rcbcmnmyk
title: Magical thinking and absorption

description: Background: This study examined magical ideation and absorption traits across non-clinical and clinical groups to reveal their potential adaptive and maladaptive functions. Sampling and Methods: The healthy participants were recruited from neighboring communities and included 760 persons (women = 53.2%). The patient's sample included 318 individuals (women = 66.5%) consisting of 25 patients with schizophrenia spectrum disorders, 183 patients with anxiety disorders, and 110 participants with mood disorders. Potentially adaptive and maladaptive socio-cognitive functions were measured to reveal the role of the magical ideation and self-absorption in patients with several psychiatric disorders. Results: The results showed the degree of magical ideation and absorption gradually grew from anxiety disorders, healthy individuals, and mood disorder to schizophrenia spectrum disorders. Further, found that self-absorption-related enhanced consciousness was the most considerable factor in self–integration weakness in schizophrenia spectrum disorders. Conclusion: The magical ideation and psychological absorption may be accounted for as a mental model construction function that results in both handicaps and gains in the social adaptation.
DOI: 10.6084/m9.figshare.24268594.v1
title: The Importance of Self-Compassion in determining Levels of Emotional Loneliness

description: In recent years, research and clinical work have focused more on self-compassion because of its links to psychological health and general well-being. The COVID-19 epidemic has also made loneliness a more widespread problem for many people around the world. It appears that loneliness has a detrimental effect on one's health and happiness. According to earlier research, social connectivity and self-compassion are positively correlated, while loneliness and self-compassion are adversely correlated. However, no research has yet looked into the connection between emotional loneliness and self-compassion. The purpose of this study was to investigate the relationship between emotional loneliness and self-compassion. The survey was conducted in Cyprus with the participation of 189 people. Self-compassion was negatively related to emotional loneliness. Additionally, even after accounting for other factors, self-compassion predicted emotional loneliness levels.
DOI: 10.6084/m9.figshare.26697094.v1
title: Phenotypes of coarse hair diameter in 263 Dazu black goats

description: Phenotypes of coarse hair diameter in 263 Dazu black goats
DOI: 10.6084/m9.figshare.26496181.v2
title: 数据 初中生童年虐待、欺凌和欺凌受害之间的关系：链式中介模型

description: Data for The relationships between childhood abuse, bullying, and bullying victimization in junior high school students: A chain mediation model. This study aimed to examine the direct effects of childhood maltreatment on bullying behavior and bullying victimization in schools as well as its indirect effects through self-esteem, peer relationships, and moral disengagement.
DOI: 10.6084/m9.figshare.6712823.v1
title: Mechanical Drawings

description: Mechanical drawings of spectrometer components
DOI: 10.6084/m9.figshare.3822321.v3
title: Forest net primary production gridded data 200-2010

description: Net primary production in gC/m^2/yr. Derived from National forest inventory data.
DOI: 10.6084/m9.figshare.15081842.v1
title: ¿Cómo avanzar en la conservación de los bosques de <i>Polylepis</i> y su diversidad biológica?

description: <i>Polylepis</i> is the dominant genus of the high Andean forest vegetation and they have a crucial ecological role. However, these forests are highly endangered and many of their biological aspects are still unknown. In this context, a series of questions were formulated with the aim that their resolution would contribute to a better understanding of <i>Polylepis’</i>dynamics and biological diversity, as well as improve their conservation efforts. Twenty one speakers from the V International Congress of Conservation and Ecology of <i>Polylepis</i> forests participated in the formulation of 67 questions related to these forests. Comments and additional information were received via email and google doc spreadsheet, open to the participants. Afterwards, two workshops were organized with the researchers to formulate, discuss, analyze and define the final list, narrowing down to a total of 40 questions. The questions were categorized into 6 different topics: Taxonomy, Ecology and Biogeography, Genetics, Conservation, Ethnobiology and Climate Change. We hope these questions will be considered as a priority for new research agendas and to define joint efforts for <i>Polylepis</i> forest conservation.
DOI: 10.17632/mwnbrmth6p
title: Fecal metabolome raw spectrum data of mice infected with Citrobacter rodentium

description: Untargeted metabolome raw spectrum data of fecal samples collected from mice infected with Citrobacter rodentium. Three groups of samples are: healthy mice without punicalagin supplementation (NC), Citrobacter rodentium infected mice without punicalagin supplementation (CM), and Citrobacter rodentium infected mice with punicalagin supplementation (PA). Both ESI positive and negative modes were analyzed.
DOI: 10.6084/m9.figshare.23633625.v3
title: All juveniles.csv

description: Male juvenile golden snub-nosed monkeys acting as the mountee to receive grooming in their same-sex mounts
DOI: 10.17632/398bg5r38x
title: B cell analyses for PD-1- and PD-L1-deficient humans and PD-1 KO mice

description: We tested the hypothesis that PD-1:PD-L1 signaling is essential for optimal B-cell memory and antibody responses by studying the recently described PD-1-deficient (Ogishi et al. Nat. Med. 2021) and PD-L1-deficient (Johnson, Ogishi, Domingo-Vila et al. JEM 2024) patients, as well as PD-1 KO mice.
This repository contains processed data and analyses for (matched figures in the corresponding paper):
- Single-cell trajectory analysis of B cells of the PD-1- and PD-L1-deficient patients (Fig. 2).
- BCR repertoire analysis of sorted naive and memory B cells of the PD-1-deficient patient and whole-blood leukocytes of the PD-L1-deficient patients (Fig. S2).
- Bulk RNASeq of in vitro stimulated PBMCs of the PD-1- and PD-L1-deficient patients (Fig. 4).
- Bulk RNASeq of sorted naive and memory B cells of the PD-1-deficient patient and some disease controls (Fig. S2, 2, and 6).
- Bulk RNASeq of sorted naive B cells from healthy donors stimulated in the presence of PD-1 or PD-L1-neutralizing antibodies (Fig. S5).
- Bulk RNASeq of sorted naive and memory B cells from WT and PD1 KO mice (Fig. 3).
DOI: 10.6084/m9.figshare.27855333.v1
title: Dataset for impact of Se nanoparticles on <i>Phaseolus vulgaris</i>

description: In this study, <i>Phaseolus vulgaris</i> was foliar-sprayed with selenium selenate (Se) or selenium nanoparticles (SeNP) at different concentrations during the vegetative stage; afterward, the seed yield was analyzed for metabolomics using <sup>1</sup>H, <i>J</i>-resolved and HSQC NMR data, and NMR databases.
DOI: 10.17632/xfc9h2sh7t
title: Dataset of SARS-CoV-2 copy numbers in Boston area wastewater from January 2020 to November 2021

description: This dataset provides RT-qPCR data for a 22-month-long (Jan 2020 - Nov 2021) densely-sampled time series of SARS-CoV-2 concentrations in municipal wastewater influent from Deer Island Wastewater Treatment Plant. This WWTP serves a catchment of ~2.3 million people in the greater Boston-area, comprised mostly of Norfolk, Suffolk, and Middlesex counties. 24-hour composite samples of influent wastewater (from north and south influents) were collected and subjected to viral concentration, RNA extraction, and RT-qPCR for SARS-CoV-2 N1/N2 gene fragments and pepper mild mottle virus (PMMoV) gene fragments. Raw Cq values and calculated concentrations are provided for each RT-qPCR replicate, as well as per-sample average concentrations of SARS-CoV-2 and PMMoV, and flow data.