cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9946907
title: Table 1S

description: <b>Supplemental Table S1: Baseline characteristics of the two clinical validation cohorts of patients with pulmonary arterial hypertension (PAH).</b>
DOI: 10.6084/m9.figshare.9946919
title: SwissPermanentPlotsData_Cailleret et al.2019_EcolAppl.zip

description: The present folder includes data from the Swiss forest reserves network that are used in the manuscript 'Bayesian calibration of a growth-dependent tree mortality model to simulate the dynamics of European temperate forests' published in Ecological Applications. It consists of:<br>- the stand basal area and DBH distribution data from 9 plots used to calibrate the Forclim model (calibration_sites)- the DBH distribution at the first and last inventories for the 21 plots used to validate the model (validation_sites).<br>
DOI: 10.5517/ccdc.csd.cc10bwfn
title: CCDC 933981: Experimental Crystal Structure Determination

description: Related Article: Jia-Xin Li, Kojo Aboagye Nartey, Xiu-Jun Cao, Ming-Dao Zhang, Jin-Song Hu|2020|J.Solid State Chem.|290|121583|doi:10.1016/j.jssc.2020.121583
DOI: 10.6084/m9.figshare.9946919.v1
title: SwissPermanentPlotsData_Cailleret et al.2019_EcolAppl.zip

description: The present folder includes data from the Swiss forest reserves network that are used in the manuscript 'Bayesian calibration of a growth-dependent tree mortality model to simulate the dynamics of European temperate forests' published in Ecological Applications. It consists of:<br>- the stand basal area and DBH distribution data from 9 plots used to calibrate the Forclim model (calibration_sites)- the DBH distribution at the first and last inventories for the 21 plots used to validate the model (validation_sites).<br>
DOI: 10.6084/m9.figshare.9946859
title: The landscape configuration and lethality of snare poaching of sympatric guilds of large carnivores and ungulates

description: The data were collected during snare surveys conducted in Murchison Falls National Park, Uganda between June and September 2018.
DOI: 10.6084/m9.figshare.9946907.v2
title: Table 1S

description: <b>Supplemental Table S1: Baseline characteristics of the two clinical validation cohorts of patients with pulmonary arterial hypertension (PAH).</b>
DOI: 10.5517/ccdc.csd.cc1pbtqk
title: CCDC 1559539: Experimental Crystal Structure Determination

description: Related Article: Shuai Huang, Ji-Fa Zhang, Lin Chen, Feng Gao, Xian-Li Zhou|2020|Phytochemistry|178|112459|doi:10.1016/j.phytochem.2020.112459
DOI: 10.6084/m9.figshare.9946907.v1
title: Table 1S

description: <b>Supplemental Table S1: Baseline characteristics of the two clinical validation cohorts of patients with pulmonary arterial hypertension (PAH).</b>
DOI: 10.6084/m9.figshare.9946748
title: Peer review comments and judgements for F1000Research, Gates Open, Wellcome and HRB

description: 22 datasets of peer review comments and judgements for version 1 documents in the F1000Research, Gates Open Research, Wellcome Open Research and HRB Open Research publication portals.<br>The F1000Research, Wellcome Open and Gates Open documents are from 8 July 2019. The HRB documents are from 17 July 2019.<br>Filenames indicate the publishing platform and document type except that the Development and Evaluation sets are systematic split of the F1000Research article comments.<br>The first two columns encode the referee judgement, as follows4 -1: Approved3 -3: Approved with reservations1 -4: Not approved<br>This project was funded by Jisc.
DOI: 10.5517/ccdc.csd.cc22cmhl
title: CCDC 1917799: Experimental Crystal Structure Determination

description: Related Article: Luana San de O. Brito, Francisco das Chagas L. Pinto, Manoel Odorico M. de Filho, Danilo D. Rocha, Maria Fernanda M. Mendoza, Alejandro Pedro Ayala, Beatriz Pinheiro Bezerra, Maria Iracema B. Loiola, Kirley M. Canuto, Edilberto R. Silveira, Otilia Deusdenia L. Pessoa|2020|Phytochemistry|178|112458|doi:10.1016/j.phytochem.2020.112458
DOI: 10.5517/ccdc.csd.cc22cmjm
title: CCDC 1917800: Experimental Crystal Structure Determination

description: Related Article: Luana San de O. Brito, Francisco das Chagas L. Pinto, Manoel Odorico M. de Filho, Danilo D. Rocha, Maria Fernanda M. Mendoza, Alejandro Pedro Ayala, Beatriz Pinheiro Bezerra, Maria Iracema B. Loiola, Kirley M. Canuto, Edilberto R. Silveira, Otilia Deusdenia L. Pessoa|2020|Phytochemistry|178|112458|doi:10.1016/j.phytochem.2020.112458
DOI: 10.6084/m9.figshare.9945173
title: Sharks in Greece - Social Media Citizen Science Project

description: The project aims to record the shark species that occurs in Greece. To achieve that we are using social media (i.e. Facebook, Instagram, Youtube, etc) and news media to record the observations that have be made by citizens (using the Citizen Science Method). <br>When needed more informations we contacted the citizens that have observed the sharks and asked them if they can give more data to their observations.<br>Then the data was recorded in a form (our database) which created for this project and the species were identified by shark experts (Greeks and other Nationalities).<br><br><br>
DOI: 10.5517/ccdc.csd.cc22cmkn
title: CCDC 1917801: Experimental Crystal Structure Determination

description: Related Article: Luana San de O. Brito, Francisco das Chagas L. Pinto, Manoel Odorico M. de Filho, Danilo D. Rocha, Maria Fernanda M. Mendoza, Alejandro Pedro Ayala, Beatriz Pinheiro Bezerra, Maria Iracema B. Loiola, Kirley M. Canuto, Edilberto R. Silveira, Otilia Deusdenia L. Pessoa|2020|Phytochemistry|178|112458|doi:10.1016/j.phytochem.2020.112458
DOI: 10.6084/m9.figshare.9945194
title: Detailed subject-specific FE rib modeling for fracture prediction

description: <b>Objective:</b> The current state of the art human body models (HBMs) underpredict the number of fractured ribs. Also, it has not been shown that the models can predict the fracture locations. Efforts have been made to create subject specific rib models for fracture prediction, with mixed results. The aim of this study is to evaluate if subject-specific finite element (FE) rib models, based on state-of-the-art clinical CT data combined with subject-specific material data, can predict rib stiffness and fracture location in anterior-posterior rib bending. <b>Method:</b> High resolution clinical CT data was used to generate detailed subject-specific geometry for twelve FE models of the sixth rib. The cortical bone periosteal and endosteal surfaces were estimated based on a previously calibrated cortical bone mapping algorithm. The cortical and the trabecular bone were modeled using a hexa-block algorithm. The isotropic material model for the cortical bone in each rib model was assigned subject-specific material data based on tension coupon tests. Two different modeling strategies were used for the trabecular bone. The capability of the FE model to predict fracture location was carried out by modeling physical dynamic anterior-posterior rib bending tests. The rib model predictions were directly compared to the results from the tests. The predicted force-displacement time history, strain measurements at four locations, and rotation of the rib ends were compared to the results from the physical tests by means of CORA analysis. Rib fracture location in the FE model was estimated as the position for the element with the highest first principle strain at the time corresponding to rib fracture in the physical test. <b>Results:</b> Seven out of the twelve rib models predicted the fracture locations (at least for one of the trabecular modeling strategies) and had a force-displacement CORA score above 0.65. The other five rib models, had either a poor force-displacement CORA response or a poor fracture location prediction. It was observed that the stress-strain response for the coupon test for these five ribs showed significantly lower Young’s modulus, yield stress, and elongation at fracture compared to the other seven ribs. <b>Conclusion:</b> This study indicates that rib fracture location can be predicted for subject specific rib models based on high resolution CT, when loaded in anterior-posterior bending, as long as the rib’s cortical cortex is of sufficient thickness and has limited porosity. This study provides guidelines for further enhancements of rib modeling for fracture location prediction with HBMs.
DOI: 10.6084/m9.figshare.9945194.v1
title: Detailed subject-specific FE rib modeling for fracture prediction

description: <b>Objective:</b> The current state of the art human body models (HBMs) underpredict the number of fractured ribs. Also, it has not been shown that the models can predict the fracture locations. Efforts have been made to create subject specific rib models for fracture prediction, with mixed results. The aim of this study is to evaluate if subject-specific finite element (FE) rib models, based on state-of-the-art clinical CT data combined with subject-specific material data, can predict rib stiffness and fracture location in anterior-posterior rib bending. <b>Method:</b> High resolution clinical CT data was used to generate detailed subject-specific geometry for twelve FE models of the sixth rib. The cortical bone periosteal and endosteal surfaces were estimated based on a previously calibrated cortical bone mapping algorithm. The cortical and the trabecular bone were modeled using a hexa-block algorithm. The isotropic material model for the cortical bone in each rib model was assigned subject-specific material data based on tension coupon tests. Two different modeling strategies were used for the trabecular bone. The capability of the FE model to predict fracture location was carried out by modeling physical dynamic anterior-posterior rib bending tests. The rib model predictions were directly compared to the results from the tests. The predicted force-displacement time history, strain measurements at four locations, and rotation of the rib ends were compared to the results from the physical tests by means of CORA analysis. Rib fracture location in the FE model was estimated as the position for the element with the highest first principle strain at the time corresponding to rib fracture in the physical test. <b>Results:</b> Seven out of the twelve rib models predicted the fracture locations (at least for one of the trabecular modeling strategies) and had a force-displacement CORA score above 0.65. The other five rib models, had either a poor force-displacement CORA response or a poor fracture location prediction. It was observed that the stress-strain response for the coupon test for these five ribs showed significantly lower Young’s modulus, yield stress, and elongation at fracture compared to the other seven ribs. <b>Conclusion:</b> This study indicates that rib fracture location can be predicted for subject specific rib models based on high resolution CT, when loaded in anterior-posterior bending, as long as the rib’s cortical cortex is of sufficient thickness and has limited porosity. This study provides guidelines for further enhancements of rib modeling for fracture location prediction with HBMs.
DOI: 10.6084/m9.figshare.9945077
title: Activated Platelet DCS - Platelet Marker.sav

description: Platelet markers in plasma<br>
DOI: 10.6084/m9.figshare.9945092
title: Ecological processes

description: Data from plant community from Pir Panchal forest range of Kashmir Himalaya, India<br>
DOI: 10.6084/m9.figshare.9945074
title: Activated Platelet DCS - Platelet count.sav

description: Platelet count and survival time after DCS<br>
DOI: 10.6084/m9.figshare.9945074.v1
title: Activated Platelet DCS - Platelet count.sav

description: Platelet count and survival time after DCS<br>
DOI: 10.6084/m9.figshare.9945077.v1
title: Activated Platelet DCS - Platelet Marker.sav

description: Platelet markers in plasma<br>
DOI: 10.6084/m9.figshare.9945065
title: Analysis of Within-host Evolution of Plasmodium falciparum during treatment with Artemisinin Combination Therapies

description: Data supporting the finds from the study<b> "Analysis of Within-Host Evolution of Plasmodium falciparun during Treatment with Artemisinin Combination Therapies"</b>
DOI: 10.5517/ccdc.csd.cc23gqjv
title: CCDC 1950567: Experimental Crystal Structure Determination

description: Related Article: Hyejin Hong, Cassidy M. Conover, Dillon T. Hofsommer, Corey A. Sanz, Robin G. Hicks|2020|Org.Biomol.Chem.|18|5838|doi:10.1039/D0OB01368D
DOI: 10.5517/ccdc.csd.cc23gqkw
title: CCDC 1950568: Experimental Crystal Structure Determination

description: Related Article: Hyejin Hong, Cassidy M. Conover, Dillon T. Hofsommer, Corey A. Sanz, Robin G. Hicks|2020|Org.Biomol.Chem.|18|5838|doi:10.1039/D0OB01368D
DOI: 10.6084/m9.figshare.9945044
title: Analysis of Within-host Evolution of Plasmodium falciparum during treatment with Artemisinin Combination Therapies

description: Supporting information for data used in the "Analysis of Within-host Evolution of Plasmodium falciparum during treatment with Artemisinin Combination Therapies"<br>
DOI: 10.6084/m9.figshare.9945065.v1
title: Analysis of Within-host Evolution of Plasmodium falciparum during treatment with Artemisinin Combination Therapies

description: Data supporting the finds from the study<b> "Analysis of Within-Host Evolution of Plasmodium falciparun during Treatment with Artemisinin Combination Therapies"</b>
DOI: 10.5517/ccdc.csd.cc23gqnz
title: CCDC 1950571: Experimental Crystal Structure Determination

description: Related Article: Hyejin Hong, Cassidy M. Conover, Dillon T. Hofsommer, Corey A. Sanz, Robin G. Hicks|2020|Org.Biomol.Chem.|18|5838|doi:10.1039/D0OB01368D
DOI: 10.5517/ccdc.csd.cc24bc0w
title: CCDC 1976157: Experimental Crystal Structure Determination

description: Related Article: Suvam Bhattacharjee, Sudip Laru, Sadhanendu Samanta, Mukta Singsardar, Alakananda Hajra|2020|RSC Advances|10|27984|doi:10.1039/D0RA05795A
DOI: 10.6084/m9.figshare.9944942
title: Datasets and metadata supporting the published article: Retinoid X receptor agonist LG100268 modulates the immune microenvironment in preclinical breast cancer models

description: The study investigated the effects of LG268, a Retinoid X Receptor (RXR) agonist, as an immune modulator in the tumor microenvironment of two genetically and histologically distinct mouse models of breast cancer.<br><b>Data access:</b> The datasets supporting all the figures in this published article are publicly available in the figshare repository (as part of this data record, <b>https://doi.org/10.6084/m9.figshare.9944942</b>) and in the supplementary files of the article.<br><br><b>Ethical approval:</b> All animal studies were done in accordance with protocols approved by the Institutional Animal Care and Use Committee at Michigan State University. <br><b>Study aims and methodology: </b>The present study aimed to examine the immunomodulatory effects of LG268, an RXR agonist, in MMTV-Neu and PyMT mouse models of human epidermal growth factor receptor 2 (HER2) positive breast cancer and triple negative breast cancer (TNBC), respectively.The following cell lines were cultured: RAW 264.7 mouse macrophage-like (ATCC) cells, E18-14C-27 cells, THP-1 (ATCC) cells, SK-BR-3 (ATCC) cells and THP-1 cells.Western blotting was performed on whole cell lysates of cells treated with drugs. Western blotting was also performed on homogenised tumors or mammary glands of mice treated with drug or a control diet.Flow cytometry was carried out on cells derived from the tumor, mammary gland and spleen removed from MMTV-neu or MMTV-PyMT female mice. For more details on the methodology, please see the related article. <br><b>Dataset descriptions:</b> The datasets supporting the figures in the published article are described in table <b>Leal et. al.xlsx </b>and are part of this data record. All four datasets are in .xlsx file format.<br><b>Figure 7 dataset.xlsx: </b>Data on the expression levels of PD-L1 in cancer cells and macrophages after treatment with LG268 or bexarotene.<br><b>MMTV-Neu immune and protein data.xlsx:</b> Data on MMTV-Neu mice including tumor and spleen weight, tumor immune cell populations, spleen immune cell populations and mammary gland immune cell populations.<br><b>PCR and flow CD3 activation.xlsx</b>: Quantitative PCR data to determine the levels of FOXP3 and data on CD3 T cells stimulated with anti-CD3 and treated with LG268. Activation of CD4 and CD8 was evaluated by flow cytometry<br><b>PyMT data sets.xlsx:</b> Data on PyMT mice, including tumor and spleen weight, tumor immune cells, mammary gland immune cells and spleen cells. <br>
DOI: 10.6084/m9.figshare.9944942.v1
title: Datasets and metadata supporting the published article: Retinoid X receptor agonist LG100268 modulates the immune microenvironment in preclinical breast cancer models

description: The study investigated the effects of LG268, a Retinoid X Receptor (RXR) agonist, as an immune modulator in the tumor microenvironment of two genetically and histologically distinct mouse models of breast cancer.<br><b>Data access:</b> The datasets supporting all the figures in this published article are publicly available in the figshare repository (as part of this data record, <b>https://doi.org/10.6084/m9.figshare.9944942</b>) and in the supplementary files of the article.<br><br><b>Ethical approval:</b> All animal studies were done in accordance with protocols approved by the Institutional Animal Care and Use Committee at Michigan State University. <br><b>Study aims and methodology: </b>The present study aimed to examine the immunomodulatory effects of LG268, an RXR agonist, in MMTV-Neu and PyMT mouse models of human epidermal growth factor receptor 2 (HER2) positive breast cancer and triple negative breast cancer (TNBC), respectively.The following cell lines were cultured: RAW 264.7 mouse macrophage-like (ATCC) cells, E18-14C-27 cells, THP-1 (ATCC) cells, SK-BR-3 (ATCC) cells and THP-1 cells.Western blotting was performed on whole cell lysates of cells treated with drugs. Western blotting was also performed on homogenised tumors or mammary glands of mice treated with drug or a control diet.Flow cytometry was carried out on cells derived from the tumor, mammary gland and spleen removed from MMTV-neu or MMTV-PyMT female mice. For more details on the methodology, please see the related article. <br><b>Dataset descriptions:</b> The datasets supporting the figures in the published article are described in table <b>Leal et. al.xlsx </b>and are part of this data record. All four datasets are in .xlsx file format.<br><b>Figure 7 dataset.xlsx: </b>Data on the expression levels of PD-L1 in cancer cells and macrophages after treatment with LG268 or bexarotene.<br><b>MMTV-Neu immune and protein data.xlsx:</b> Data on MMTV-Neu mice including tumor and spleen weight, tumor immune cell populations, spleen immune cell populations and mammary gland immune cell populations.<br><b>PCR and flow CD3 activation.xlsx</b>: Quantitative PCR data to determine the levels of FOXP3 and data on CD3 T cells stimulated with anti-CD3 and treated with LG268. Activation of CD4 and CD8 was evaluated by flow cytometry<br><b>PyMT data sets.xlsx:</b> Data on PyMT mice, including tumor and spleen weight, tumor immune cells, mammary gland immune cells and spleen cells. <br>
DOI: 10.6084/m9.figshare.9944834
title: Should rehabilitation goals reflect all aspects of functioning in relation to a biopsychosocial ICF perspective?

description: <b>Purpose:</b> To classify short-term and long-term rehabilitation goals and analyse how they capture functioning in a biopsychosocial International Classification of Functioning, Disability and Health (ICF) perspective. <b>Materials and methods:</b> A retrospective study was conducted at two specialised outpatient multidisciplinary rehabilitation centres for polio survivors and accident victims. Rehabilitation goals extracted from patient journals were linked to the ICF according to linking rules. <b>Results:</b> One hundred patients were included. Four hundred and eighty-seven short-term and long-term rehabilitation goals were linked to the ICF. Fifty-seven per cent were linked to Activity and Participation, 22% to Body Functions, 1% to Body Structure, 4% to Environmental Factors, 4% to Personal Factors, whereas 11% were not defined and 1% was not covered. The identified categories covered all ICF domains. The most frequent categories for short-term goals were <i>d450</i> “Walking” and <i>d570</i> “Looking after one’s health.” For long-term goals, <i>d850</i> “Remunerative Employment” and <i>d920</i> “Recreation and Leisure” were the most frequent. <b>Conclusion:</b> The study showed challenges in capturing all aspects of biopsychosocial functioning in rehabilitation goals, particularly Contextual Factors. This study indicates that rehabilitation goals capture <i>capacity</i> rather than <i>performance</i>. Further research could highlight if functioning is captured in the rehabilitation plan, and in this way include both <i>capacity</i> and <i>performance</i>.Implications for rehabilitationHealth professionals in a post-acute or long-term rehabilitation setting should pay attention to <i>capacity and performance</i> when rehabilitation goals are set.The rehabilitation plan should contain goals and a description of patient’s contextual factors and both should be equally valued and combined in a description of functioning.In a post-acute or long-term rehabilitation setting short-term and long-term goals are affected by the context. A longer rehabilitation intervention lead to goals linked to activity and participation. Health professionals in a post-acute or long-term rehabilitation setting should pay attention to <i>capacity and performance</i> when rehabilitation goals are set. The rehabilitation plan should contain goals and a description of patient’s contextual factors and both should be equally valued and combined in a description of functioning. In a post-acute or long-term rehabilitation setting short-term and long-term goals are affected by the context. A longer rehabilitation intervention lead to goals linked to activity and participation.
DOI: 10.5517/ccdc.csd.cc23fm7f
title: CCDC 1949504: Experimental Crystal Structure Determination

description: Related Article: Meiying Liu, Jingjing Liang, Xuebin Xu, Zhiliang Liu|2020|Dalton Trans.|49|10895|doi:10.1039/D0DT02066D