cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25405/data.ncl.23579883
title: Experimental (non camera) data: Interactions between Internal Solitary Waves and Sea Ice

description: Data DescriptionThis data record contains a zip folder for each experiment presented in the study, which is considered alongside raw camera images, initially in .dfm/.dfi DigiFlow movie/image formats, available within this collection as .avi movie files. Where available the zip folders contain:Probe data:Probes_######.csv (or ####.csv) : Raw probe dataProbeParse.m or ProbeParse_v2.m : Matlab script to pass and record probe metadata (reliant on probe_read.m script available elsewhere in this collection).ProbeData.mat : Matlab structure containing raw and processed probe data, alongside relevant metadata.ProbeData.png : Image of density profileOther data:df.conf : text file containing experimental parameters/metadataDivided between cameras for each folder, DigiFlow_Status.dfs file containing the World Coordinate System, alongside the wcs_first_cut.dfi reference image for the World Coordinate System. And, piv_ts.dfi an uncompressed DigiFlow Image format file containing vertical timeseries of velocity and vorticity computed by the PIV method.DJL.mat : DJL solution for the experiment, tuned by the amplitudeptv_tracks_compiled.mat : Matlab structure containing the float location and velocity data, and where applicable other outputs of DigiFlow's PTV algorithm, and where relevant compiled from multiple cameras, and particle manually condensed into tracks per individual float.
DOI: 10.25405/data.ncl.23579883.v1
title: Experimental (non camera) data: Interactions between Internal Solitary Waves and Sea Ice

description: Data DescriptionThis data record contains a zip folder for each experiment presented in the study, which is considered alongside raw camera images, initially in .dfm/.dfi DigiFlow movie/image formats, available within this collection as .avi movie files. Where available the zip folders contain:Probe data:Probes_######.csv (or ####.csv) : Raw probe dataProbeParse.m or ProbeParse_v2.m : Matlab script to pass and record probe metadata (reliant on probe_read.m script available elsewhere in this collection).ProbeData.mat : Matlab structure containing raw and processed probe data, alongside relevant metadata.ProbeData.png : Image of density profileOther data:df.conf : text file containing experimental parameters/metadataDivided between cameras for each folder, DigiFlow_Status.dfs file containing the World Coordinate System, alongside the wcs_first_cut.dfi reference image for the World Coordinate System. And, piv_ts.dfi an uncompressed DigiFlow Image format file containing vertical timeseries of velocity and vorticity computed by the PIV method.DJL.mat : DJL solution for the experiment, tuned by the amplitudeptv_tracks_compiled.mat : Matlab structure containing the float location and velocity data, and where applicable other outputs of DigiFlow's PTV algorithm, and where relevant compiled from multiple cameras, and particle manually condensed into tracks per individual float.
DOI: 10.5281/zenodo.8355524
title: Data: Double Task Switching: an investigation into the effects of similarity and task-rule congruency on cognitive flexibility in the context of mental fatigue

description: This is the data that was collected for the Double Task Switching Experiment (Hinss, Brock & Roy 2023). The File contains the behavioral as well as the subjective data of all participants. <br> Some details:<br> Switch<br> 1= repetition trial<br> 2= internal switch<br> 3= external switch Task<br> 1= Low/High<br> 2= Even/Odd<br> 3= Vertical/Horizontal<br> 4= Cold/Hot Language (of instructions)<br> 0= French<br> 1= English Congruency<br> 1= Neutral<br> 2= Internally incongruent<br> 3= Externally incongruent<br> 4= Double incongruent<br> 5= Internally congruent<br> 6= Externally congruent<br> 7= Double congruent Correct<br> 1= Correct Response<br> 0= Error Hit<br> 0= Correct response on letter S<br> 1= Correct response on letter L Response<br> 0= Participants response on letter S<br> 1= Participants response on letter L EDI (Edinburgh Handedness questionnaire) MaryA1: What time did you settle in for the night?<br> MaryA2: What time did you fall asleep last night?<br> MaryA3: What time did you wake up this morning?<br> MaryA4: What time did you get up this morning?<br> MaryB1: How was your sleep<br> MaryB2: How many times did you wake up last night ?<br> MaryB3: How many hours did you sleep last night?<br> MaryB4: How many hours did you sleep during the day yesterday?<br> MaryB5: How well did you sleep last night?<br> MaryC1: If you didn't sleep well, what was the problem? (e.g., restless, etc.)<br> MaryD1: How much caffine/theine did you consume today ( in cups of coffee) ?<br> MaryD2: How much caffeine/theine would you usually have consumed at this time of the day ( in cups of coffee)? For any further questions, please refer to the full journal paper (https://doi.org/10.1371/journal.pone.0279021). For publications, please cite as: Hinss MF, Brock AM, Roy RN (2023) The double task-switching protocol: An investigation into the effects of similarity and conflict on cognitive flexibility in the context of mental fatigue. PLOS ONE 18(2): e0279021. https://doi.org/10.1371/journal.pone.0279021<br>
DOI: 10.5281/zenodo.8355523
title: Data: Double Task Switching: an investigation into the effects of similarity and task-rule congruency on cognitive flexibility in the context of mental fatigue

description: This is the data that was collected for the Double Task Switching Experiment (Hinss, Brock & Roy 2023). The File contains the behavioral as well as the subjective data of all participants. <br> Some details:<br> Switch<br> 1= repetition trial<br> 2= internal switch<br> 3= external switch Task<br> 1= Low/High<br> 2= Even/Odd<br> 3= Vertical/Horizontal<br> 4= Cold/Hot Language (of instructions)<br> 0= French<br> 1= English Congruency<br> 1= Neutral<br> 2= Internally incongruent<br> 3= Externally incongruent<br> 4= Double incongruent<br> 5= Internally congruent<br> 6= Externally congruent<br> 7= Double congruent Correct<br> 1= Correct Response<br> 0= Error Hit<br> 0= Correct response on letter S<br> 1= Correct response on letter L Response<br> 0= Participants response on letter S<br> 1= Participants response on letter L EDI (Edinburgh Handedness questionnaire) MaryA1: What time did you settle in for the night?<br> MaryA2: What time did you fall asleep last night?<br> MaryA3: What time did you wake up this morning?<br> MaryA4: What time did you get up this morning?<br> MaryB1: How was your sleep<br> MaryB2: How many times did you wake up last night ?<br> MaryB3: How many hours did you sleep last night?<br> MaryB4: How many hours did you sleep during the day yesterday?<br> MaryB5: How well did you sleep last night?<br> MaryC1: If you didn't sleep well, what was the problem? (e.g., restless, etc.)<br> MaryD1: How much caffine/theine did you consume today ( in cups of coffee) ?<br> MaryD2: How much caffeine/theine would you usually have consumed at this time of the day ( in cups of coffee)? For any further questions, please refer to the full journal paper (https://doi.org/10.1371/journal.pone.0279021). For publications, please cite as: Hinss MF, Brock AM, Roy RN (2023) The double task-switching protocol: An investigation into the effects of similarity and conflict on cognitive flexibility in the context of mental fatigue. PLOS ONE 18(2): e0279021. https://doi.org/10.1371/journal.pone.0279021<br>
DOI: 10.6084/m9.figshare.23967507.v1
title: Supplementary Material for: Impact of medical and surgical obesity treatment on dental caries: A two-year prospective cohort study

description: The objective was to study the long-term effects on oral health of bariatric surgery compared with medical treatment of obesity. Swedish females with morbid obesity (n = 66;18-35 years at baseline) were followed prospectively from before obesity treatment until two years after treatment. The main response variable was dental caries registered according to the ICDAS-II system. Possible confounding caused by sociodemographic characteristics, general health, oral health habits and oral hygiene was controlled for. The statistical methods included Chi-square tests, Student’s t-tests, one-way ANOVA, Wilcoxon’s non-parametric tests and linear regression models. In the surgically treated patients (n = 40), a significant increase over time in enamel caries (mean increase 4.13 tooth surfaces ICDAS1-2), dentine caries (mean increase 2.18 tooth surfaces ICDAS3-6), and total caries (mean increase 6.30 tooth surfaces ICDAS1-6) was registered (all p &lt; 0.001), which was not seen in the medically treated patients (n=26). However, the difference between the treatment groups (surgical or medical) was only statistically significant for enamel caries (crude β 4.89, p=0.003) and total caries (crude β 6.53, p&lt;0.001). The relationships were stable and independent of differences in confounders as socioeconomy, general health and oral health behaviors. In conclusion, two years after obesity treatment, a significant increase in dental caries was registered in the surgically treated but not in the medically treated women. The dental service should intensify its preventive efforts in individuals undergoing obesity treatment.
DOI: 10.6084/m9.figshare.24155784
title: The genome of Odontamblyopus lacepedii

description: This data is the whole genome data of Odontamblyopus lacepedii, sequenced by Oxford Nanopore PromethION. The software used for the genome assembly is NextDenovo 2.5.2, and the gene assembly data does not have mitochondrial genetic data removed.
DOI: 10.6084/m9.figshare.24126486.v1
title: Supplementary Material for: A Decade of Pathogenesis Advances in non-Type 2 Inflammatory Endotypes in Chronic Rhinosinusitis: 2012-2022

description: Chronic rhinosinusitis (CRS) is a heterogeneous disease characterized by localized inflammation of the upper airways. CRS includes two main phenotypes, namely CRS with nasal polyps (CRSwNP) and CRS without nasal polyps (CRSsNP). The phenotype-based classification method cannot reflect the pathological mechanism. The endotype-based classification method has been paid more and more attention by researchers. It is mainly divided into type 2 and non-type 2 endotypes. The mechanism driving the pathogenesis of non-type 2 inflammation is currently unknown. In this review, the Pubmed and Web of Science databases were searched to conduct a critical analysis of representative literatures on the pathogenesis of non-type 2 inflammation in CRS published in the past decade. This review summarizes the latest evidence that may lead to the pathogenesis of non-type 2 inflammation. It is the main method that analyzing the pathogenesis from the perspective of immunology. Genomics and proteomics technique provide new approaches to the study of the pathogenesis. Due to differences in race, environment, geography, and living habits, there are differences in the occurrence of non-type 2 inflammation, which increases the difficulty of understanding the pathogenesis of non-type 2 inflammation in CRS. Studies have confirmed that non-type 2 endotype is more common in Asian patients. The emergence of overlap and unclassified endotypes has promoted the study of heterogeneity in CRS. In addition, as the source of inflammatory cells and the initiation site of the inflammatory response, microvessels and microlymphatic vessels in the nasal mucosal subepithelial tissue participate in the inflammatory response and tissue remodeling. It is uncertain whether CRS patients affect the risk of infection with SARS-CoV-2. In addition, the pathophysiological mechanism of non-type 2 CRS combined with COVID-19 remains to be further studied and it is worth considering how to select the befitting biologics for CRS patients with non-type 2 inflammation.
DOI: 10.6084/m9.figshare.24126429.v1
title: Supplementary Material for: Supratentorial Collision Tumor of Hemangioblastoma and Metastatic Clear Cell Renal Cell Carcinoma in a Patient with von Hippel-Lindau Disease

description: Collision tumors are rarely reported in patients with von Hippel-Lindau (VHL) disease, even though VHL patients often present with multi-organ tumor syndromes, like hemangioblastoma and renal cell carcinoma (RCC). Hemangioblastoma is rarely located in a supratentorial location, and intracranial lateral ventricular is also not a common site of metastasis for RCC. It is extremely rare for the two tumors to collide in the supratentorial area. We report a 64-year-old man with a history of clear cell RCC who presented with a sudden headache. The brain magnetic resonance imaging (MRI) revealed that there was a cystic-solid mass in the intracranial lateral ventricular trigone. Histopathologically, the tumor consisted of two distinct components, most of which showed the typical morphology of hemangioblastoma. However, there were a few acinar structures composed of clear cells scattered in hemangioblastoma, and these acinar structures were subsequently confirmed as clear cell RCC. The genetic testing confirmed that the patient belonged to VHL disease with de novo somatic mutation. Based on our case report, we systematically reviewed the characteristics of collision tumor composed of hemangioblastoma and metastatic RCC in VHL patients. The special growth site of our case is the first report of this kind of collision tumor, and can also help to enrich our understanding of VHL disease and collision tumor.
DOI: 10.21942/uva.23284787.v1
title: Reproduction Package Kalb et al. 2023

description: <strong>Reproduction package for Kalb et al. (2023)</strong> This reproduction package contains the data and code to reproduce the results presented in Kalb et al. (2023). <strong>Directory structure</strong> <strong>data:</strong> directory where datasets are stored <strong>all_data.csv</strong> present day and past island variables used as input for the statistical analysis <strong>all_data_polygons.gpkg</strong> present day and past island polygons and associated variables used as input for the statistical analysis <strong>rasters_paleoclim</strong> directory with mean precipitation and MTWQ rasters (tiff) per period (present, 4500 BP, 8500 BP, 12000 BP, 13000 BP, 15000 BP, 17000 BP, LGM) <strong>code:</strong> Directory with statistical analysis scripts <strong>analysis.Rmd</strong> R-markdown file of statistical analysis <strong>analysis.html</strong> html rendered version of statistical analysis Usage Click the Rproj file in the root directory to open the project in Rstudio. From within Rstudio, navigate to analysis.Rmd and click the file to add it to the editor.
DOI: 10.6084/m9.figshare.24056331.v1
title: Supplementary Material for: Management of status epilepticus by different pediatric departments: neurology, intensive care and emergency medicine

description: Introduction: The aim of this study was to explore the differences in status epilepticus (SE) management among pediatric neurology, emergency medicine and intensive care specialists in Turkey. Methods: A 22-item questionnaire regarding first, second and third-line management strategies of SE including demographic characteristics and common etiologies according to speciality of participants was mailed to 370 specialists working in Turkey. Results: A total of 334 participants (response rate 90%); with 136 pediatric neurologists, 102 pediatric emergency medicine and 96 pediatric intensive care specialists completed the survey. While intensive care specialists frequently managed SE due to metabolic and autoimmune reasons; the most common etiologies encountered by emergency medicine specialists were epilepsy and infections. More than half of intensive care specialists (64.6%) reported using non-BDZ antiseizure medications in the 5th minute of the seizure. Most of neurologists (76.4%) preferred to administer intravenous (iv) levetiracetam infusion as a second line agent. About half of intensive care specialists and neurologists tried immunomodulatory therapies in super refractory SE. Intensive care and emergency medicine specialists were less likely to favor ketogenic diet and pyridoxine therapy for the treatment of super refractory SE. The rate of requesting EEG monitoring to recognize nonconvulsive SE was found to be very low except for neurologists. Conclusion: There was no consensus among neurologists, intensive care and emergency medicine specialists in the management of SE in Turkey. Familiarity with particular antiseizure medications and the etiologies they manage seem to be the most important factors influencing the attitudes.
DOI: 10.6084/m9.figshare.23963391.v1
title: Supplementary Material for: Association Between Physical Frailty and Sleep Disturbances Among Patients on Hemodialysis: A Cross-sectional Study

description: Introduction Among patients on hemodialysis (HD), physical frailty and sleep disturbances are not only common but also associated with adverse outcomes. The aim of this study was to evaluate the association between physical frailty and sleep disturbances in patients on HD. Methods This cross-sectional study was conducted from June 2017 to March 2021, with outpatients receiving HD thrice a week at two dialysis facilities in Japan. Sleep disturbances were identified with the Athens Insomnia Scale (AIS). Physical frailty was defined using the Fried Frailty Phenotype. Patients were classified as “non-frailty (number of frailty components: 0–2)” or “frailty (3–5).” We examined the association of sleep disturbances with physical frailty and its components by performing a logistic regression analysis. Results We analyzed 360 patients (mean age 65.6 years; 62% men). Eighty-one patients (23%) were classified into the group with frailty, and the mean AIS score was 5.2±4.2points. After adjusting for clinical characteristics, increasing the AIS score per 1 point was associated with higher odds of physical frailty (odds ratio, 1.12; 95% confidence interval, 1.05–1.20; p &lt; 0.01). As for the frailty components, exhaustion, low physical activity, and weak grip strength showed an association with sleep disturbances (all p &lt; 0.05). Conclusions Sleep disturbances were independently associated with physical frailty in patients on HD. Future studies are warranted to investigate the causality between physical frailty and sleep disturbances in this population.
DOI: 10.21942/uva.23284787
title: Reproduction Package Kalb et al. 2023

description: <strong>Reproduction package for Kalb et al. (2023)</strong> This reproduction package contains the data and code to reproduce the results presented in Kalb et al. (2023). <strong>Directory structure</strong> <strong>data:</strong> directory where datasets are stored <strong>all_data.csv</strong> present day and past island variables used as input for the statistical analysis <strong>all_data_polygons.gpkg</strong> present day and past island polygons and associated variables used as input for the statistical analysis <strong>rasters_paleoclim</strong> directory with mean precipitation and MTWQ rasters (tiff) per period (present, 4500 BP, 8500 BP, 12000 BP, 13000 BP, 15000 BP, 17000 BP, LGM) <strong>code:</strong> Directory with statistical analysis scripts <strong>analysis.Rmd</strong> R-markdown file of statistical analysis <strong>analysis.html</strong> html rendered version of statistical analysis Usage Click the Rproj file in the root directory to open the project in Rstudio. From within Rstudio, navigate to analysis.Rmd and click the file to add it to the editor.
DOI: 10.21942/uva.23284787.v3
title: Reproduction Package Kalb et al. 2023

description: <strong>Reproduction package for Kalb et al. (2023)</strong> This reproduction package contains the data and code to reproduce the results presented in Kalb et al. (2023). <strong>Directory structure</strong> <strong>data:</strong> directory where datasets are stored <strong>all_data.csv</strong> present day and past island variables used as input for the statistical analysis <strong>all_data_polygons.gpkg</strong> present day and past island polygons and associated variables used as input for the statistical analysis <strong>rasters_paleoclim</strong> directory with mean precipitation and MTWQ rasters (tiff) per period (present, 4500 BP, 8500 BP, 12000 BP, 13000 BP, 15000 BP, 17000 BP, LGM) <strong>code:</strong> Directory with statistical analysis scripts <strong>analysis.Rmd</strong> R-markdown file of statistical analysis <strong>analysis.html</strong> html rendered version of statistical analysis Usage Click the Rproj file in the root directory to open the project in Rstudio. From within Rstudio, navigate to analysis.Rmd and click the file to add it to the editor.
DOI: 10.21942/uva.23284787.v2
title: Reproduction Package Kalb et al. 2023

description: <strong>Reproduction package for Kalb et al. (2023)</strong> This reproduction package contains the data and code to reproduce the results presented in Kalb et al. (2023). <strong>Directory structure</strong> <strong>data:</strong> directory where datasets are stored <strong>all_data.csv</strong> present day and past island variables used as input for the statistical analysis <strong>all_data_polygons.gpkg</strong> present day and past island polygons and associated variables used as input for the statistical analysis <strong>rasters_paleoclim</strong> directory with mean precipitation and MTWQ rasters (tiff) per period (present, 4500 BP, 8500 BP, 12000 BP, 13000 BP, 15000 BP, 17000 BP, LGM) <strong>code:</strong> Directory with statistical analysis scripts <strong>analysis.Rmd</strong> R-markdown file of statistical analysis <strong>analysis.html</strong> html rendered version of statistical analysis Usage Click the Rproj file in the root directory to open the project in Rstudio. From within Rstudio, navigate to analysis.Rmd and click the file to add it to the editor.
DOI: 10.6084/m9.figshare.24155844
title: Additional dataset for "Pump and sway: wild primates use compliant supports as a tool to augment leaping in the canopy"

description: The arboreal environment is constructed of complex, discontinuous supports. The shortest distances between trees typically lie between compliant terminal branches, making crossing difficult. Despite qualitative observations of wild primates pumping branches before leaping across gaps in the canopy, most studies have suggested that support compliance increases the energetic cost of arboreal leaping. In this study, we recorded wild colobine monkeys crossing gaps in the canopy, and quantitatively digitized the kinematics of both the monkey and the compliant support during behavioral sequences. We provide evidence that adult red colobus (<i>Piliocolobus tephrosceles</i>) use branch compliance to their advantage by actively pumping branches before leaping\, augmenting their vertical velocity at take-off. Additionally, we found that red colobus and black and white colobus monkeys (<i>Colobus guereza</i>) utilize tree swaying to cross large gaps, augmenting horizontal velocity at take-off and decreasing the distance between the launching support and the target. This deliberate branch manipulation to produce a mechanical effect for stronger propulsion fits into the framework of instrumental problem-solving. This is among the first studies of wild primates that show how compliant branches can be used advantageously to augment locomotor performance.