cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p1hxthwv
title: National Assessment of Oil and Gas Project - Powder River Basin Province (033) - Wyoming Coalbed Methane Wells

description: Coalbed Methane wells are provided as a method for analysis and illustration of the degree of exploration, type of production, and distribution of production in an assessment unit or province.  Each point represents a well location and is symbolized as producing oil, gas, both oil and gas, or other (dry or unknown) using the status code in the attribute table.  Data were provided by the Wyoming State Oil and Gas Conservation Commission.  See supplemental information section for limitations and assumptions about data.
DOI: 10.15468/dl.57qbhv
title: Occurrence Download

description: A dataset containing 1924513 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psaltriparus minimus (J.K.Townsend, 1837)"
 ]
}

 The dataset includes 1924513 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055468-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ztfnsw
title: Occurrence Download

description: A dataset containing 1561 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Fossil)",
 "OccurrenceStatus is Present",
 "TaxonKey is Guaiacum officinale L."
 ]
}

 The dataset includes 1561 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055489-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.22602275.v1
title: Additional file 2 of m6A-related lncRNA-based immune infiltration characteristic analysis and prognostic model for colonic adenocarcinoma

description: Additional file 2: Table S2. Differential expression of m6a regulators in normal and tumor tissues in TCGA samples combined with GTEX samples.
DOI: 10.6084/m9.figshare.22602278.v1
title: Additional file 3 of m6A-related lncRNA-based immune infiltration characteristic analysis and prognostic model for colonic adenocarcinoma

description: Additional file 3: Table S3. Table of M6A-related prognostic gene coefficients for model construction.
DOI: 10.6084/m9.figshare.7397990.v1
title: Additional file 2: of Genome-wide identification and characterization of long non-coding RNAs during postnatal development of rabbit adipose tissue

description: Overview of RNA-seq. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7398017
title: Additional file 3: of Altered expression of K13 disrupts DNA replication and repair in Plasmodium falciparum

description: Housekeeping gene sets. Genes sets for DNA replication and repair, translation, transcription and proteasome. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.25158470
title: test.zip

description: asdadada
DOI: 10.6084/m9.figshare.25158470.v1
title: test.zip

description: asdadada
DOI: 10.6084/m9.figshare.25162811
title: Data used

description: Data used in the study intitled "Influence of environmental and intrinsic factors on the flowering success and petal morphology of Pulsatilla patens and the hybrid Pulsatilla patens × vernalis in Finland" where we mainly assess which factors influence fitness-related traits of P. patens and a hybrid species P. patens × vernalis, two endangered species in Finland.
DOI: 10.6084/m9.figshare.25162811.v1
title: Data used

description: Data used in the study intitled "Influence of environmental and intrinsic factors on the flowering success and petal morphology of Pulsatilla patens and the hybrid Pulsatilla patens × vernalis in Finland" where we mainly assess which factors influence fitness-related traits of P. patens and a hybrid species P. patens × vernalis, two endangered species in Finland.
DOI: 10.6084/m9.figshare.7398056
title: Additional file 5: of Altered expression of K13 disrupts DNA replication and repair in Plasmodium falciparum

description: Fisherâ s exact test results for transcription factor binding sites linked to dephasing genes. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.7398056.v1
title: Additional file 5: of Altered expression of K13 disrupts DNA replication and repair in Plasmodium falciparum

description: Fisherâ s exact test results for transcription factor binding sites linked to dephasing genes. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.7398035
title: Additional file 4: of Altered expression of K13 disrupts DNA replication and repair in Plasmodium falciparum

description: Predicted K13 functional interactors. Genes predicted to have functional interactions with K13 from plasmoMAP. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.7398017.v1
title: Additional file 3: of Altered expression of K13 disrupts DNA replication and repair in Plasmodium falciparum

description: Housekeeping gene sets. Genes sets for DNA replication and repair, translation, transcription and proteasome. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.7398035.v1
title: Additional file 4: of Altered expression of K13 disrupts DNA replication and repair in Plasmodium falciparum

description: Predicted K13 functional interactors. Genes predicted to have functional interactions with K13 from plasmoMAP. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.7398173.v1
title: Additional file 6: of CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

description: List of protein-coding genes present in GENCODE release 25 that were either deleted or overlapped genes with the type â non-codingâ in GENCODE release 27. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7398185
title: Additional file 7: of CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

description: Protein coding genes in GENCODE release 25 that were not expressed in any of the GTEx experiments. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7398185.v1
title: Additional file 7: of CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

description: Protein coding genes in GENCODE release 25 that were not expressed in any of the GTEx experiments. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7398074
title: Additional file 6: of Altered expression of K13 disrupts DNA replication and repair in Plasmodium falciparum

description: Expression data. Expression data as counts and FPKM. (XLSX 2029 kb)
DOI: 10.6084/m9.figshare.16835131.v1
title: Additional file 9 of Transcriptome analysis of Clavibacter michiganensis subsp. michiganensis-infected tomatoes: a role of salicylic acid in the host response

description: Additional file 9: Table S9. Optimized MRM experimental parameters for SA and IS.
DOI: 10.6084/m9.figshare.16835113.v1
title: Additional file 4 of Transcriptome analysis of Clavibacter michiganensis subsp. michiganensis-infected tomatoes: a role of salicylic acid in the host response

description: Additional file 4: Table S4. List of downregulated DEGs.
DOI: 10.6084/m9.figshare.7398110
title: Additional file 2: of CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

description: Novel CHESS protein-coding transcripts with Pfam domain hits. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.22600177
title: Additional file 2 of Mitochondrial genomes of soft scales (Hemiptera: Coccidae): features, structures and significance

description: Additional file 2: Table S2. Annotation and gene organization of the mitochondrial genome of C. japonicus. N: minor strand; J: major strand. The tRNAs were annotated by different methods: MITOS2, ARWEN or aligning with the sequences of related species that were not annotated by software (ALIGN). Running ARWEN with the “-ps &lt; num&gt;” option.
DOI: 10.6084/m9.figshare.22602361
title: Additional file 1 of Proteomic analysis of protein lysine 2-hydroxyisobutyrylation (Khib) in soybean leaves

description: Additional file 1: Fig. S1. The bubble chart shows the GO enrichment analysesof Khib-modifiedproteins in soybean leaves. Fig. S2. Thebubble chart shows the enrichment of KEGG pathway of Khib-modifiedproteins in soybean leaves. Fig. S3. Representative pathway mapsof Khib-modified proteins. (A) Khib-modified proteins in central carbon metabolism, includingpentose phosphate pathway and oxidative phosphorylation. (B) Khib-modifiedproteins in carbon fixation in photosynthetic organisms. (C) Khib-modifiedproteins in fatty acid biosynthesis. The identified Khib-modifiedproteins are indicated in boxes with a red background. Fig. S4. The global PPI network ofidentified Khib-modified proteins in soybean leaves. Table S1. All identified Khib sites and proteins that overlap in three replicates in soybean leaves. Table S2. GO functional classification of Khib-modified proteins in soybean leaves. Table S3. Subcellular localization distribution of Khib-modified proteins in soybean leaves. Table S4. Secondary structure and surface accessibility distribution of Khib-modified peptides in soybean leaves. Table S5. GO enrichment analysis of Khib-modified proteins in soybean leaves. Table S6. KEGG pathway enrichment of Khib-modified proteins in soybean leaves. Table S7. Motif analysis of Khib-modified peptides in soybean leaves. Table S8. The PPI network of Khib-modified proteins in soybean leaves.
DOI: 10.6084/m9.figshare.21582984
title: supplementary Table 1

description: Supplementary Table 1
DOI: 10.6084/m9.figshare.7398110.v1
title: Additional file 2: of CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

description: Novel CHESS protein-coding transcripts with Pfam domain hits. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.7398206.v1
title: Additional file 9: of CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

description: All novel protein-coding and lncRNA genes in CHESS that were upregulated in at least one tissue. Shown are the tissues in which upregulation was observed. (XLSX 89 kb)
DOI: 10.6084/m9.figshare.22600195.v1
title: Additional file 8 of Mitochondrial genomes of soft scales (Hemiptera: Coccidae): features, structures and significance

description: Additional file 8: Table S8. Codon usage of the 13 mitochondrial protein-coding genes of five scale insects. AA: amino acid; RSCU: relative synonymous codon usage.
DOI: 10.6084/m9.figshare.22602593.v1
title: Additional file 12 of Comparative genomic analysis of Citrobacter sp. XT1-2-2 reveals insights into the molecular mechanism of microbial immobilization of heavy metals

description: Additional file 12: Supplementary Table S12. Pairwise digital DNA-DNA hybridization valuesbetween query genome and the selected type strains and whole genomes by Typestrain genome server.
DOI: 10.6084/m9.figshare.22602581
title: Additional file 9 of Comparative genomic analysis of Citrobacter sp. XT1-2-2 reveals insights into the molecular mechanism of microbial immobilization of heavy metals

description: Additional file 9: Supplementary Table S9. The specific genes in gene category of Citrobacter sp. XT1-2-2.
DOI: 10.6084/m9.figshare.22602587
title: Additional file 10 of Comparative genomic analysis of Citrobacter sp. XT1-2-2 reveals insights into the molecular mechanism of microbial immobilization of heavy metals

description: Additional file 10: Supplementary Table S10. The accessory genes in gene category of Citrobacter sp. XT1-2-2.
DOI: 10.6084/m9.figshare.22602593
title: Additional file 12 of Comparative genomic analysis of Citrobacter sp. XT1-2-2 reveals insights into the molecular mechanism of microbial immobilization of heavy metals

description: Additional file 12: Supplementary Table S12. Pairwise digital DNA-DNA hybridization valuesbetween query genome and the selected type strains and whole genomes by Typestrain genome server.
DOI: 10.6084/m9.figshare.22602469.v1
title: Additional file 13 of Gut microbiome variations in Rhinopithecus roxellanae caused by changes in the environment

description: Additional file 13. Overview of the antibiotic resistome in the gut of R.roxellanae.
DOI: 10.6084/m9.figshare.7398155.v1
title: Additional file 5: of CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

description: List of all potential protein-coding transcripts from the novel genes in CHESS. (XLSX 80 kb)
DOI: 10.6084/m9.figshare.7398125.v1
title: Additional file 3: of CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

description: Novel CHESS protein-coding transcripts with CDD domain hits. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.7398197
title: Additional file 8: of CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

description: Novel protein-coding and lncRNA genes in CHESS that are differentially expressed between males and females. Comparisons were conducted in all tissues for which both male and female samples were available. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.7398197.v1
title: Additional file 8: of CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

description: Novel protein-coding and lncRNA genes in CHESS that are differentially expressed between males and females. Comparisons were conducted in all tissues for which both male and female samples were available. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.22602463
title: Additional file 11 of Gut microbiome variations in Rhinopithecus roxellanae caused by changes in the environment

description: Additional file 11. Relative abundance profile at CAZy family level.
DOI: 10.6084/m9.figshare.7398140.v1
title: Additional file 4: of CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

description: List of all novel potential protein-coding genes in CHESS. (XLSX 63 kb)
DOI: 10.6084/m9.figshare.22602439.v1
title: Additional file 3 of Gut microbiome variations in Rhinopithecus roxellanae caused by changes in the environment

description: Additional file 3. Unweighted Unifrac distance from Amplicon sequencing.
DOI: 10.6084/m9.figshare.22602442.v1
title: Additional file 4 of Gut microbiome variations in Rhinopithecus roxellanae caused by changes in the environment

description: Additional file 4. Weighted Unifrac distance from Amplicon sequencing.
DOI: 10.6084/m9.figshare.7398173
title: Additional file 6: of CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

description: List of protein-coding genes present in GENCODE release 25 that were either deleted or overlapped genes with the type â non-codingâ in GENCODE release 27. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.22602439
title: Additional file 3 of Gut microbiome variations in Rhinopithecus roxellanae caused by changes in the environment

description: Additional file 3. Unweighted Unifrac distance from Amplicon sequencing.
DOI: 10.6084/m9.figshare.7398206
title: Additional file 9: of CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

description: All novel protein-coding and lncRNA genes in CHESS that were upregulated in at least one tissue. Shown are the tissues in which upregulation was observed. (XLSX 89 kb)
DOI: 10.6084/m9.figshare.22602445.v1
title: Additional file 5 of Gut microbiome variations in Rhinopithecus roxellanae caused by changes in the environment

description: Additional file 5. Data Production of 24 samples.
DOI: 10.6084/m9.figshare.22602454
title: Additional file 8 of Gut microbiome variations in Rhinopithecus roxellanae caused by changes in the environment

description: Additional file 8. Gene abundance of each sample annoated against KEGG, eggNOG and CAZy.
DOI: 10.6084/m9.figshare.22602451
title: Additional file 7 of Gut microbiome variations in Rhinopithecus roxellanae caused by changes in the environment

description: Additional file 7. The differential genera between captive health monkeys and wild monkeys measured by MetaStats.
DOI: 10.6084/m9.figshare.22602451.v1
title: Additional file 7 of Gut microbiome variations in Rhinopithecus roxellanae caused by changes in the environment

description: Additional file 7. The differential genera between captive health monkeys and wild monkeys measured by MetaStats.
DOI: 10.6084/m9.figshare.22602454.v1
title: Additional file 8 of Gut microbiome variations in Rhinopithecus roxellanae caused by changes in the environment

description: Additional file 8. Gene abundance of each sample annoated against KEGG, eggNOG and CAZy.
DOI: 10.6084/m9.figshare.22602457.v1
title: Additional file 9 of Gut microbiome variations in Rhinopithecus roxellanae caused by changes in the environment

description: Additional file 9. Relative abundance profile at KEGG EC level.
DOI: 10.6084/m9.figshare.22602466
title: Additional file 12 of Gut microbiome variations in Rhinopithecus roxellanae caused by changes in the environment

description: Additional file 12. Detailed information of differential CAZy family.
DOI: 10.6084/m9.figshare.22602466.v1
title: Additional file 12 of Gut microbiome variations in Rhinopithecus roxellanae caused by changes in the environment

description: Additional file 12. Detailed information of differential CAZy family.
DOI: 10.6084/m9.figshare.22602572
title: Additional file 6 of Comparative genomic analysis of Citrobacter sp. XT1-2-2 reveals insights into the molecular mechanism of microbial immobilization of heavy metals

description: Additional file 6: Supplementary Table S6. all the genes on the genomic islands of Citrobacter sp. XT1-2-2.
DOI: 10.6084/m9.figshare.22602578
title: Additional file 8 of Comparative genomic analysis of Citrobacter sp. XT1-2-2 reveals insights into the molecular mechanism of microbial immobilization of heavy metals

description: Additional file 8: Supplementary Table S8. The core genes in gene category of Citrobacter sp. XT1-2-2.
DOI: 10.6084/m9.figshare.22602581.v1
title: Additional file 9 of Comparative genomic analysis of Citrobacter sp. XT1-2-2 reveals insights into the molecular mechanism of microbial immobilization of heavy metals

description: Additional file 9: Supplementary Table S9. The specific genes in gene category of Citrobacter sp. XT1-2-2.
DOI: 10.4121/b2588d43-7365-422f-8a73-8071e16c5e1c
title: SimPlyWood: a set of tools supporting the numerical simulation of the in-plane seismic response of timber diaphragms retrofitted with plywood panels

description: The purpose of this tools package is to enable the numerical simulation, by means of a macro-element modelling strategy, of the in-plane seismic response of timber diaphragms retrofitted with plywood panels. The tools encompass a Microsoft Excel spreadsheet for determining the input values for the numerical model,and a user-supplied subroutine compatible with DIANA FEA finite element software. The tools package includes, besides the README.pdf document, the worksheet SimPlyWood_input.xlsx, the user-supplied subroutine library for DIANA FEA SimPlyWood.dll, and the original subroutine listing SimPlyWood.f90.
DOI: 10.6084/m9.figshare.22600261
title: Additional file 1 of Clinical characteristics and outcomes of gastrointestinal stromal tumor patients receiving surgery with or without TKI therapy: a retrospective real-world study

description: Additional file file 1: Supplement file 1.
DOI: 10.4121/b2588d43-7365-422f-8a73-8071e16c5e1c.v1
title: SimPlyWood: a set of tools supporting the numerical simulation of the in-plane seismic response of timber diaphragms retrofitted with plywood panels

description: The purpose of this tools package is to enable the numerical simulation, by means of a macro-element modelling strategy, of the in-plane seismic response of timber diaphragms retrofitted with plywood panels. The tools encompass a Microsoft Excel spreadsheet for determining the input values for the numerical model,and a user-supplied subroutine compatible with DIANA FEA finite element software. The tools package includes, besides the README.pdf document, the worksheet SimPlyWood_input.xlsx, the user-supplied subroutine library for DIANA FEA SimPlyWood.dll, and the original subroutine listing SimPlyWood.f90.
DOI: 10.6084/m9.figshare.22600192
title: Additional file 7 of Mitochondrial genomes of soft scales (Hemiptera: Coccidae): features, structures and significance

description: Additional file 7: Table S7. Codon usage of the 13 mitochondrial protein-coding genes of hemipteran insects. AA: amino acid; RSCU: relative synonymous codon usage.
DOI: 10.25582/data.2022-03.2467240/2435347
title: Data for EMSL Project 51375 from March 2022
DOI: 10.25582/data.2023-04.2779745/2435348
title: Data for EMSL Project 51375 from April 2023
DOI: 10.25582/data.2022-03.2445428/2435349
title: Data for EMSL Project 51375 from March 2022
DOI: 10.25582/data.2023-08.2864409/2435350
title: Data for EMSL Project 51375 from August 2023
DOI: 10.25582/data.2022-03.2451613/2435351
title: Data for EMSL Project 51375 from March 2022
DOI: 10.25582/data.2022-03.2451353/2435352
title: Data for EMSL Project 51375 from March 2022
DOI: 10.25582/data.2022-03.2445460/2435353
title: Data for EMSL Project 51375 from March 2022
DOI: 10.25582/data.2022-03.2451329/2435354
title: Data for EMSL Project 51375 from March 2022
DOI: 10.25582/data.2022-03.2445501/2435355
title: Data for EMSL Project 51375 from March 2022
DOI: 10.25582/data.2021-07.2270930/2435356
title: Data for EMSL Project 51375 from July 2021
DOI: 10.15468/dl.enhuc8
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Xysticus edax (O.Pickard-Cambridge, 1872)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093182-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2022-03.2451446/2435357
title: Data for EMSL Project 51375 from March 2022
DOI: 10.25582/data.2021-07.2270959/2435358
title: Data for EMSL Project 51375 from July 2021
DOI: 10.25582/data.2021-12.2396411/2435359
title: Data for EMSL Project 51375 from December 2021
DOI: 10.15468/dl.wq5gkd
title: Occurrence Download

description: A dataset containing 38093 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hypsugo savii (Bonaparte, 1837)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 38093 records from 799 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093181-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.be2yhu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Harpalus inexpectatus Kataev, 1989",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093183-240626123714530/datasets/export for details.