cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.0hb5n/2
title: Reverse Multiplex Identifier Sequences

description: Fifteen reverse primers, each with the ion torrent primer B linked to the HCO-1777 primer and a unique Multiplex Identifier Sequences were designed. This file provides the MIDs
DOI: 10.5061/dryad.0hb5n/3
title: MID allocation to each predator individual

description: The unique forward and reverse MID combination used to identify sequences from each individual predator
DOI: 10.5061/dryad.1pb63/1
title: MassARRAY data

description: the MassARRAY data for genotyping analysis of article "Allotetraploidy generates extensive homeologous expression rewiring and phenotypic diversity at the population level in rice"
DOI: 10.5061/dryad.33k09/1
title: survival_singleKD_ten1

description: Survival data of the control and tenecin 1 knock-down beetles over 35 days after infection with Staphylococcus aureus of inejction of a saline solution. Experiment 1.
DOI: 10.5061/dryad.33k09/2
title: CFU_singleKD_ten1

description: Number of CFU of Staphylococcus aureus recovered from Tenebrio molitor along time in control and tenecin 1 knock down beetles. Experiment 1.
DOI: 10.5061/dryad.33k09/3
title: survival_doubleKD_ten1ten2_ten1ten4

description: Survival data of Tenebrio molitor after infection with Staphylococcus aureus or a saline solution over 35 days in control, tenecin 1 and tenecin 2 or tenecin 1 and tenecin 4 knock down beetles. Experiment 2.
DOI: 10.5061/dryad.3ds63/1
title: REC1498

description: data set of 1498 cases
DOI: 10.5061/dryad.3r37c/1
title: Auld&BrandDataEvolLetts

description: This data file includes the infection data for experiments conducted in Auld & Brand 2017 Evolution Letters. ID denotes the individual jar ID, genotype denotes the name of each host genotype, host type denotes whether the host genotype is sympatric or allopatric to the parasite populations, rep denotes the replicate number, pop.epi.size denotes the integrated prevalence of the epidemic from where the parasite isolate was sampled, prop. infected denotes the proportion of parasite hosts that became infected, control.prop.infected denotes the proportion of hosts exposed to the ancestral parasite isolate that became infected, control.spore.burden denotes the density of spores in hosts infected with the ancestral parasite isolate, spore.burden denotes the density of spores in hosts infected with evolved parasite isolates, change.prop.inf denotes the change in infectivity between evolved parasite isolates and controls and change.spore.burden denotes the change in parasite spore burden between hosts infected with the ancestral and evolved parasite isolates.
DOI: 10.5061/dryad.4088k/2
title: CCA showing distribution of bird species among studied habitat types

description: Canonical correspondence analysis plots showing distribution of bird species among studied habitat types in spring (left plot) and winter (right plot). Red-listed birds are marked with red colour.
DOI: 10.5061/dryad.65jr5/1
title: Data from_Cava et al 2017_Abandoned pastures cannot spontaneously recover the attributes of old-growth savannas
DOI: 10.5061/dryad.69bb2/1
title: Supplementary material

description: Supplementary calculations and plots accompanying the article.
DOI: 10.5061/dryad.6hn20/1
title: Dataset_Devigili et al_JEB_2017

description: Dataset used for the analysis on guppy sperm velocity.
DOI: 10.5061/dryad.6q0q4/3
title: DensityCamissoniopsis_cheiranthifolia

description: Population density estimated in 2009 and 2010 from 38 C. cheiranthifolia populations.
DOI: 10.5061/dryad.74699/1
title: Data from:  Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation

description: Site locality information, soil chemistry, seed characteristics, and other information associated with the paper
DOI: 10.5061/dryad.7hn64/1
title: C/N ratios of diet

description: C/N ratios of herbivores diet.
DOI: 10.5061/dryad.7hn64/10
title: README

description: Introductions for data files.
DOI: 10.5061/dryad.7hn64/3
title: Feces nutrient release

description: Feces C loss (CR), N loss (NR), C release rates (CRR) and N release rates (NRR) during decomposition.
DOI: 10.5061/dryad.7hn64/4
title: The chemical composition of fresh feces

description: The chemical composition and fiber contents of fresh feces. The data include fecal C, N, hemicellulose, cellulose, lignin (ADL) and lignin/N ratios.
DOI: 10.5061/dryad.7hn64/5
title: Feces C/N Ratios

description: Dynamics of fecal C/N ratios during decomposition.
DOI: 10.5061/dryad.7hn64/6
title: Feces remaining and water content

description: Dynamics of feces remaining ratio (dry matter) and water content during decomposition.
DOI: 10.5061/dryad.7hn64/7
title: Feces microbial biomass carbon

description: Dynamics of feces microbial biomass carbon during decomposition.
DOI: 10.5061/dryad.7hn64/8
title: The  chemical composition of plants

description: The C and N contents of plants foraged by herbivores.
DOI: 10.5061/dryad.7hn64/9
title: Soil mineral N and water contents

description: The mineral N contents and water contents of soil under feces bags at day 0 and day 30 during decomposition.
DOI: 10.5061/dryad.89g40/2
title: Mean trait values of leaf anatomy and biochemistry

description: This file contains the mean trait values of leaf anatomy and biochemistry from 21 Restinga species. Five fully expanded sun leaves with little to no damage were collected from 5 mature individuals per species. Leaves were collected from individuals occurring across 80 25-m² plots distributed along 16 transects of 100 m-long (five plots per transect) in Northeastern Brazil. Leaves were collected within a two-month interval to reduce temporal variation in leaf biochemistry. Traits and abbreviations: Mesophyll thickness (Meso), cuticle thickness (Cuticle), palisade layer per spongy parenchyma layer (P/S), mesophyll layer per total leaf thickness (M/T), starch content (Starch), sucrose content (Sucrose), and total soluble protein (TSP).
DOI: 10.5061/dryad.8d0h5/2
title: Supporting data for figure 3

description: Times of levator and depressor muscle activity, time of leg unloading  and joint angles of right middle legs during stance. Data are normalized to stance duration. n_step indicates step number. percent_stance indicates the percent of the stance phase. levator_activity = 1 or depressor_activity = 1 indicates that the respective muscle was active at the given time of the stance phase. tUL = 1 indicates the onset of leg unloading. Joint angles are given in degree.
DOI: 10.5061/dryad.8d0h5/3
title: Supporting data for figure 4

description: Touch-downs of legs relative to the onset of unloading in the right middle leg and their simulated unloading efficacy. n_step indicates step number. Times of touch-downs are given in ms. Efficacy is given in µNm (middle leg CTr torque). Each leg is labeled as being a right (R) or left (L) and a front (F), middle (M) or hind (H) leg. Note that we excluded the touch-down of a leg from efficacy calculations if it occurred simultaneously with the touch-down or lift-off of another leg. In this case, the change in middle leg CTr torque could not be ascribed to the action of any one leg alone.
DOI: 10.5061/dryad.c2j05/1
title: Peromyscus proteincoding

description: Nexus file containing concatenated and aligned protein coding gene data for Bayesian and maximum likelihood analysis.
DOI: 10.5061/dryad.c5961/1
title: MeDIP fold-enrichment data RSC of HI/HI male prairie voles

description: MeDIP fold-enrichment data (bedgraph format) at the avpr1a locus, calculated against INPUT control from a pool of RSC from 4 HI/HI male prairie voles
DOI: 10.5061/dryad.d1f0d/1
title: Bird_etal_shark_trophic_geography

description: Carbon isotope data compiled from muscle tissues of 5394 sharks from 114 species. Data provided include d13C values, latitude of capture, designation as shelf, slope or oceanic shark, length, depth of capture (where available), C/N ratios of muscle, and lipid extraction method if used. Also included are phytoplankton d13C data modelled from Magozzi et al 2016 (Ecosphere 8(5):e01763. 10.1002/ecs2.1763).  Model data expressed as the median and standard deviation d13C value for the Longhurst Biogeographic province corresponding to the location of shark capture
DOI: 10.5061/dryad.df564/22
title: MOUQ_REG

description: Test omission errors for ecological niche models estimated for the mountain quail in which regularization multiplier values varied. Models were built based on the selection of the best variable suite (traditional [correlation/variable contribution], biological, or random) in Maxent. Ecological niche models were estimated across 100 replicates for each regularization multiplier value.
DOI: 10.5061/dryad.df564/23
title: NOBO_REG

description: Test omission errors for ecological niche models estimated for the northern bobwhite in which regularization multiplier values varied. Models were built based on the selection of the best variable suite (traditional [correlation/variable contribution], biological, or random) in Maxent. Ecological niche models were estimated across 100 replicates for each regularization multiplier value.
DOI: 10.5061/dryad.df564/24
title: SCQU_REG

description: Test omission errors for ecological niche models estimated for the scaled quail in which regularization multiplier values varied. Models were built based on the selection of the best variable suite (traditional [correlation/variable contribution], biological, or random) in Maxent. Ecological niche models were estimated across 100 replicates for each regularization multiplier value.
DOI: 10.5061/dryad.df564/25
title: maxentResultsCAQU

description: Maxent output (excel file) for ecological niche models of the California quail estimated from the best variable suite and top performing regularization multiplier.
DOI: 10.5061/dryad.df564/26
title: maxentResultsMONQ

description: Maxent output (excel file) for ecological niche models of the Montezuma quail estimated from the best variable suite and top performing regularization multiplier.
DOI: 10.5061/dryad.df564/27
title: maxentResultsGAQU

description: Maxent output (excel file) for ecological niche models of the Gambel's quail estimated from the best variable suite and top performing regularization multiplier.
DOI: 10.5061/dryad.df564/28
title: maxentResultsMOUQ

description: Maxent output (excel file) for ecological niche models of the mountain quail estimated from the best variable suite and top performing regularization multiplier.
DOI: 10.5061/dryad.df564/29
title: maxentResultsNOBO

description: Maxent output (excel file) for ecological niche models of the northern bobwhite estimated from the best variable suite and top performing regularization multiplier.
DOI: 10.5061/dryad.df564/30
title: maxentResultsSCQU

description: Maxent output (excel file) for ecological niche models of the scaled quail estimated from the best variable suite and top performing regularization multiplier.
DOI: 10.5061/dryad.df564/31
title: caqu_bbs_a

description: Raster file of California quail abundance estimates derived from Breeding Bird Survey (BBS) data.
DOI: 10.5061/dryad.fp32k/1
title: Norin and Gamperl (2017)_Table S1_data
DOI: 10.5061/dryad.gt3gd/10
title: Haplotype sequences of the nuclear gene Dbndd1.

description: Sequence file in Fasta format.
DOI: 10.5061/dryad.gt3gd/11
title: Haplotype sequences of the nuclear gene Rhou.

description: Sequence file in Fasta format.
DOI: 10.5061/dryad.gt3gd/12
title: Haplotype sequences of the nuclear gene Pgbd5.

description: Sequence file in Fasta format.
DOI: 10.5061/dryad.gt3gd/13
title: Haplotype sequences of the nuclear gene Spa1l2.

description: Sequence file in Fasta format.
DOI: 10.5061/dryad.gt3gd/14
title: Haplotype sequences of the nuclear gene Irf2bp2.

description: Sequence file in Fasta format.
DOI: 10.5061/dryad.gt3gd/8
title: Haplotype sequences of the nuclear gene Fanca.

description: Sequence file in Fasta format.
DOI: 10.5061/dryad.gt3gd/9
title: Haplotype sequences of the nuclear gene Tcf25.

description: Sequence file in Fasta format.
DOI: 10.5061/dryad.h7v6v/2
title: raw data file for analysis presented in table2
DOI: 10.5061/dryad.j380c/1
title: Phaius Output

description: Data outputs from the QDDv2b pipeline generated from NextGeneration sequencing.
DOI: 10.5061/dryad.jm838/1
title: Eco-performance and natural history data for lowland frogs in Colombia.

description: Specimen data were collected in the field and eco-performance data were collected under controlled laboratory conditions by the lead author. Environmental variables were taken from WorldClim.
DOI: 10.5061/dryad.js480/1
title: Diet consumption and fitness

description: Data to plot heat maps. Contains consumption and fitness data.
DOI: 10.5061/dryad.kb552/1
title: Data from digital images and reflectances

description: Data from digital images and reflectances from: Borago officinalis (petals and pedicels), Malva sylvestris (petals), Moricandia moricandioides (petals), Orchis italica (petals), Silene littorea (petals and calyces) and Sonchus oleraceus (stems).
DOI: 10.5061/dryad.kn8d2/35
title: Promiscuity_L8_F500M500_mtDNA_100Iterations

description: mtDNA distance matrices for promiscuity (L8) simulations, under high dispersal. Geographical (GGD) and Genetic (GD) distance matrices are provided for females and males, for 100 simulation iterations (It1-100). Cell A1= # Loci, A2= # Individuals (the remainder of Row #1 can be ignored). Row #3= Individual IDs, Distance matrix data starts in Row #4. The final column = Individual IDs.
DOI: 10.5061/dryad.kn8d2/36
title: Promiscuity_L8_F500M500_YChromosome_100Iterations

description: Y chromosome versus mtDNA distance matrices for promiscuity (L8) simulations, under high dispersal. Geographical (GGD) and Genetic (GD) distance matrices are provided for females and males, for 100 simulation iterations (It1-100). Cell A1= # Loci, A2= # Individuals (the remainder of Row #1 can be ignored). Row #3= Individual IDs, Distance matrix data starts in Row #4. The final column = Individual IDs.
DOI: 10.5061/dryad.kn8d2/37
title: Monogamy_F100M500_YChromosome_100Iterations

description: Y chromosome versus mtDNA distance matrices for monogamy simulations, under male-biased dispersal. Geographical (GGD) and Genetic (GD) distance matrices are provided for females and males, for 100 simulation iterations (It1-100). Cell A1= # Loci, A2= # Individuals (the remainder of Row #1 can be ignored). Row #3= Individual IDs, Distance matrix data starts in Row #4. The final column = Individual IDs.
DOI: 10.5061/dryad.kn8d2/38
title: GenAlEx Sim

description: The GenAlEx Simulations are written in Visual Basic for Applications and can only be run within Excel 2010 - 32 bit, on a PC with the additional supporting package ZRandom. A copy of the GenAlEx Add-in containing the simulation routines, along with ZRandom, a read me file and an overview on how to run the simulations is provided. Academics with VBA programming experience who wish to see the full VBA code are invited to contact Rod Peakall (rod.peakall@anu.edu.au) who is willing to provide access to the code which is otherwise password protected for macro security purposes.
DOI: 10.5061/dryad.n1851/1
title: Historical phylogenetic diagrams
DOI: 10.5061/dryad.n2q50/1
title: Eriksen, Moa & Nilsen: Ptarmigan management data

description: Data used for empirical analyses. Contains data on willow ptarmigan harvest, management strategies and ecosystem characteristics.
DOI: 10.5061/dryad.n2q50/2
title: Eriksen, Moa & Nilsen: Harvest simulations

description: R-script used for simulating harvest within different management strategies, at a range of densities, under uncertain implementation. Two alternative model paths are presented.
DOI: 10.5061/dryad.nd5m2/1
title: Sepulveda_bullfrog_occupancy_habitat_data

description: Encounter history of American Bullfrog breeding life stages (eggs, larvae, and metamorphs) and site-specific physical habitat data at 92 sites in the Yellowstone River floodplains, Montana from 2012- 2016.
DOI: 10.5061/dryad.nq3s6/1
title: Captures of aquatic insects in polarized light traps at three distances from rivers in New York State

description: We created traps consisting of illumated oil-filled trays of 5 different colors that variously horizontally polarized light from ~20% to ~100%. These were placed in a row 5, 10 and 15 meters from 5 different rivers in southern New York State. They were exposed for 2 hours before sunset and their location randomized every 20 minutes. The goal of the study was to map the behavioral reaction norms of a diversity of aquatic insects to variation in the degree of polarized light and to understand how those reaction norms shifted as a function of the distance between a high quality natural habitat and the ecological trap habitat the test surfaces represented. Metadata for the variables is provided.
DOI: 10.5061/dryad.pt180/1
title: Snyder_etal_TunaAtFronts

description: Matlab workspace containing the archival tag data used in paper. The timeseries data is provided in a structure while the daily locations and their associated dates are provided in separate matrices. Each matrix has 4 columns which are associated with the four tags - the order of which is listed in the 'Front' structure. The 'Readme.m' file contains the code used to analyze this data.
DOI: 10.5061/dryad.q3g70/1
title: All data of Bókony et al. 2017. Functional Ecology

description: Excel file containing 3 data sheets: 1) total biomass per tub, 2) Bufo data, 3) Rana data; plus a "Notes" sheet for README.
DOI: 10.5061/dryad.r1538/1
title: IMa2 input file (mtDNA and STRs)

description: Sample input file for IMa2 analysis of two geographical populations from P. pityusensis with 16 loci (2430 bp mtDNA sequence and 15 STRs).
DOI: 10.5061/dryad.r35kr/1
title: HawaiianTaro_SNP.vcf

description: Zip archive of eight SNP datasets in VCF format, obtained by four SNP calling methods: GBS+RAD, GBS subset, transcriptome, and UNEAK (see Materials and methods). Each was filtered by minor allele count ≥ 2 (mac2) and minor allele frequency ≥ 0.1 (maf10). The primary dataset was based on GBS+RAD and mac2.
DOI: 10.5061/dryad.r35kr/2
title: HawaiianTaro_SNP.fas

description: ZIP archive of two SNP datasets used for phylogenetic analyses in FASTA format, homozygous positions only (nomenclature see VCF files).
DOI: 10.5061/dryad.rd7jt/1
title: Data

description: Data used in the analyses presented in this paper.
DOI: 10.5061/dryad.sk0q2/1
title: Wikipedia data

description: Time stamps of 14962 Wikipedia articles across 26 different languages over a span of 15 years.
DOI: 10.5061/dryad.sk435/1
title: Sarcocystis results table prey

description: As described in the Material & Methods section (2.4. Bioinformatics) of the corresponding paper, this csv results table contains the assignment of 18S operational taxonomic units (OTUs) to Sarcocystis species, when applying an identity threshold of 98% using BLAST® (blastn, Altschul et al., 1990). Only hits with a biunique best bit score for one parasite species were collected. Additionally, the table provides the sample ID, ungulate species, OTU number, amplicon name, blast identity as well as information about whether samples had been collected in an area recolonized by wolves or not.
DOI: 10.5061/dryad.vv121/1
title: data files

description: contains XRD, XPS, conductivity and magnetic data
DOI: 10.5061/dryad.vv469/24
title: imputed-seq-genotypes-Chr19.33010000-34010000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr19:33.51 LC QTL, for 357 animals.
DOI: 10.5061/dryad.vv469/25
title: imputed-seq-genotypes-Chr19.42490000-43490000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr19:42.99 LC QTL, for 357 animals.
DOI: 10.5061/dryad.vv469/26
title: imputed-seq-genotypes-Chr19.60630000-61630000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr19:61.13 LC QTL, for 357 animals.
DOI: 10.5061/dryad.vv469/27
title: imputed-seq-genotypes-Chr20.31190000-32190000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr20:31.69 LY QTL, for 357 animals.
DOI: 10.5061/dryad.vv469/28
title: imputed-seq-genotypes-Chr20.57950000-58950000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr20:58.45 LC QTL, for 357 animals.
DOI: 10.5061/dryad.vv469/29
title: imputed-seq-genotypes-Chr26.22460000-23460000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr26:22.96 LY QTL, for 357 animals.
DOI: 10.5061/dryad.vv469/30
title: imputed-seq-genotypes-Chr27.35710000-36710000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr27:36.21 LC QTL, for 357 animals.
DOI: 10.5061/dryad.vv469/31
title: imputed-seq-genotypes-Chr28.6060000-7060000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr28:6.56 LC QTL, for 357 animals.
DOI: 10.5061/dryad.vv469/32
title: imputed-seq-genotypes-Chr29.9110000-10110000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr29:9.61 LC QTL, for 357 animals.
DOI: 10.5061/dryad.07k4p/1
title: Russell et al data_170724

description: The field data were collected over the course of a 12-year field study at La Selva Biological Station, Costa Rica. The data file was created in Excel; this single file contains 10 sheets. Please see the first sheet in this file, labeled ‘Metadata’ for descriptions of the data.
DOI: 10.5061/dryad.0hb5n/4
title: Abundance of prey taxa across all sites/season combinations

description: The number of each potential prey items at each site in each season sampled.
DOI: 10.5061/dryad.0hb5n/5
title: Site physicochemical characteristics

description: Measured habitat and water chemistry variables at each site
DOI: 10.5061/dryad.0hb5n/6
title: NGS Sequences

description: NGS sequences collapsed into unique sequences with MIDs and primers
DOI: 10.5061/dryad.17b01/1
title: Supporting data

description: There are two files in the data package. One file gives the geographic information about the research area and sampling points, the other supplies all the experimental data used in the manuscript.
DOI: 10.5061/dryad.1g9d4/1
title: data_packet

description: This is a zipped folder (add .zip to the file name) that contains the following items: 1) original mtSSU and nuITS alignments compiled for this study, 2) mtSSU and nuITS alignments used for Bayesian analyses ("BI.nex" files), 3) mtSSU and nuITS alignments used for likelihood analyses ("ML.phy" files) together with relevant partition files ("ML_partition_file.txt" files), and 4) mtSSU and nuITS alignments used to generate distance matrices ("distance.matrix.nex" files).
DOI: 10.5061/dryad.33k09/10
title: singleKD_ten2_deltact

description: Data on the efficiency of the knock down by qPCR in the single knock down of tenecin 2 in tenecin 2 knock down and control beetles.
DOI: 10.5061/dryad.33k09/11
title: singleKD_ten4_deltact

description: Data on the efficiency of the knock down by qPCR in the single knock down of tenecin 4 in tenecin 4 knock down and control beetles.
DOI: 10.5061/dryad.33k09/4
title: CFU_doubleKD_ten1ten2_ten1ten4

description: Number of Staphylococcus aureus CFU recovered from Tenebrio molitor across time after infection in control, tenecin one and tenecin 2 or tenecin 1 and tenecin 4 beetles. Experiment 2.
DOI: 10.5061/dryad.33k09/5
title: survival_singleKD_ten2_ten4

description: Survival data of Tenebrio molitor after infection with Staphylococcus aureus or injection of a saline solution in control, tenecin 2 knock down and tenecin 4 knock down beetles over 35 days. Experiment 3.
DOI: 10.5061/dryad.33k09/6
title: CFU_singleKD_ten2_ten4

description: Number of CFU of Staphylococcus aureus recovered from Tenebrio molitor across time after infection in control, tenecin 2 or tenecin 4 knock down beetles. Experiment 3.
DOI: 10.5061/dryad.33k09/7
title: singleKD_ten1KD_deltact_CFU

description: Data on the efficiency of the knock down by qPCR in the single knock down of tenecin 1 in relationship to the number of CFU of Staphylococcus aureus recovered from tenecin 1 knock down and control beetles.