cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.dr1qs08
title: Data from: Genomic variation underlying complex life history traits revealed by genome sequencing in Chinook salmon

description: A broad portfolio of phenotypic diversity in natural organisms can buffer
 against exploitation and increase species persistence in disturbed
 ecosystems. The study of genomic variation that accounts for ecological
 and evolutionary adaptation can represent a powerful approach to extend
 understanding of phenotypic variation in nature. Here we present a
 chromosome-level reference genome assembly for Chinook salmon
 (Oncorhynchus tshawytscha; 2.36 Gb) that enabled association mapping of
 life history variation and phenotypic traits for this species. Whole
 genome resequencing of populations with distinct life history traits
 provided evidence that divergent selection was extensive throughout the
 genome within and among phylogenetic lineages, indicating a broad
 portfolio of phenotypic diversity exists in this species that is related
 to local adaptation and life history variation. Association mapping with
 millions of genome-wide SNPs revealed that a genomic region of major
 effect on chromosome 28 was associated with phenotypes for premature and
 mature arrival to spawning grounds and was consistent across three
 distinct phylogenetic lineages. Our results demonstrate how genomic
 resources can enlighten the genetic basis of known phenotypes in exploited
 species and assist in clarifying phenotypic variation that may be
 difficult to observe in naturally occurring organisms.
description: Dryad Table 1-cand genes
 within lineagesCandidate genes within
 each phylogenetic lineage of Chinook salmon.Dryad Table 2-cand genes
 between lineagesCandidate genes between
 lineages of Chinook salmon.Dryad Table 3-GO
 enrichment resultsGO enrichment results
 for candidate genes.Annotation of genome
 assemblyannotation file for
 CHI06 genome assembly (gzip compressed)CHI06.ncbi2.annotation.gff3.gz
DOI: 10.5061/dryad.9236ng5
title: Data from: Self-reported functional status predicts post-operative outcomes in non-cardiac surgery patients with pulmonary hypertension

description: BACKGROUND: Pulmonary hypertension (PHTN) is associated with increased
 post-procedure morbidity and mortality. Pre-procedure echocardiography
 (ECHO) is a widely used tool for evaluation of these patients, but its
 accuracy in predicting post-procedure outcomes is unproven. Self-reported
 exercise tolerance has not been evaluated for operative risk
 stratification of PHTN patients. OBJECTIVE: We analyzed whether
 self-reported exercise tolerance predicts outcomes (hospi-tal
 length-of-stay [LOS], mortality and morbidity) in PHTN patients (WHO Class
 I - V) under-going anesthesia and surgery. METHODS AND FINDINGS: We
 reviewed 550 non-cardiac, non-obstetric procedures per-formed on 370 PHTN
 patients at a single institution between 2007 and 2013. All patients had
 cardiac ECHO documented within 1 year prior to the procedure.
 Pre-procedure comorbidities and ECHO data were collected. Functional
 status (&lt; or ? 4 metabolic equivalents of task [METs]) was assigned
 based on responses to standard patient interview questions during the
 pre-anesthesia clinic visit. Multiple logistic regression was used to
 develop a risk score model (Pul-monary Hypertension Outcome Risk Score;
 PHORS) and determine its value in predicting post-procedure outcomes. In
 an adjusted model, functional status &lt;4 METs was independently
 associ-ated with a LOS &gt;7 days (p &lt; .003), as were higher
 ASA class (p &lt; .002), open surgical approach (p &lt; .002),
 procedure duration &gt; 2 hours (p &lt; .001), and the absence of
 systemic hypertension (p = .012). PHORS Score ?2 was associated with an
 increased 30-day major complication rate (28.7% vs. 19.2%; p &lt;
 0.001) and ICU admission rate (8.6% s 2.8%; p = .007), but no statistical
 difference in hospital readmissions rate (17.6% vs. 14.0%; p = .29), or
 mortality (3.5% vs. 1.4%; p = .75). Similar ECHO findings did not further
 improve outcome prediction. CONCLUSIONS: Poor functional status is
 associated with severe PHTN and predicts increased LOS and post-procedure
 complications in patients with moderate to severe pulmonary hyperten-sion
 with different etiologies. A risk assessment model predicts increased LOS
 with fair accura-cy. A thorough evaluation of underlying etiologies of
 PHTN should be undertaken in every pa-tient.
description: PHTN 8.14.18 Final
 DatasetExcel Spreadsheet with
 individual cases per row, and data variables (dichotomous variables as
 well as continuous variables) organized by column. Columns with outcomes
 or potential scoring criteria highlighted in orange and
 green.
DOI: 10.60893/figshare.apl.31028998
title: Supplement1

description: Supplemental material
DOI: 10.60893/figshare.apl.31028998.v1
title: Supplement1

description: Supplemental material
DOI: 10.5061/dryad.1237b6m
title: Data from: Verbal abilities in children of mothers with epilepsy: association to maternal folate status

description: Objective: To examine the effect of maternal folic acid supplementation
 and maternal plasma folate and antiepileptic drug (AED) concentrations on
 language delay in AED exposed children of mothers with epilepsy. Methods:
 Children of mothers with and without epilepsy enrolled 1999-2008 in the
 Norwegian Mother and Child Cohort study were included. Information on
 medical history, AED use and folic acid supplementation during pregnancy
 was collected from parent-completed questionnaires. Maternal plasma folate
 and maternal plasma and umbilical cord AED concentrations were measured in
 blood samples from gestational week 17-19 and immediately after birth,
 respectively. Language development at 18 and 36 months was evaluated by
 the Ages and Stages Questionnaires. Results: A total of 335 AED exposed
 children of mothers with epilepsy and 104,222 children of mothers without
 epilepsy were surveyed. For those with no maternal periconceptional folic
 acid supplementation, the fully adjusted OR for language delay in AED
 exposed children compared to the controls at 18 months was 3.9 (CI
 1.9-7.8, p&lt;0.001) and at 36 months 4.7 (CI 2.0-10.6,
 p&lt;0.001). When folic supplementation was used, the corresponding
 ORs for language delay were 1.7 (CI 1.2-2.6, p=0.01) and 1.7 (CI 0.9-3.2,
 p=0.13), respectively. The positive effect of folic acid supplement use on
 language delay in AED exposed children was only significant when
 supplement was used in the period from four weeks before the pregnancy and
 until the end of the first trimester. Conclusion: Folic acid use early in
 pregnancy may have a preventative effect on language delay associated with
 in utero AED exposure.
description: Supplemental data
 Husebye
DOI: 10.5281/zenodo.18174932
title: Effects of Multitype Team Diversity and Team Formation on Team Effectiveness [DATASET]

description: This repository contains supplementary materials for a study on team diversity, team formation methods, and team effectiveness in higher-education student teams.

Due to GDPR and institutional data protection requirements, individual-level student data cannot be publicly shared. To support transparency and reproducibility, the repository provides:

• A fully documented spreadsheet implementing the complete diversity-calculation pipeline used in the study, including normalized metrics for range, spread, separation, and disparity across different attribute types.• Python scripts used to compute correlation matrices and Fisher z-comparisons.• Synthetic illustration datasets that replicate the structure and approximate distributions of the original data without containing real student information.

Together, these materials enable researchers to reproduce the analytical workflow, understand how diversity indices were operationalized, and apply the same methods to other datasets.

Access to the original anonymized team-level dataset may be requested through the Ethics Committee of the University of Twente under a controlled data-use agreement.
DOI: 10.5061/dryad.v6m2j89
title: Data from: Application of a Bayesian weighted surveillance approach for detecting chronic wasting disease in white-tailed deer

description: SUMMARY 1. Surveillance is critical for the early detection of emerging
 and re-emerging infectious diseases, and weighted surveillance uses
 heterogeneity in risk of infection to increase the sampling efficiency. 2.
 We apply a Bayesian approach to estimate weights for 16 surveillance
 classes of white-tailed deer in Wisconsin, USA, relative to
 hunter-harvested yearling males. We use these weights to conduct a
 surveillance program for detecting chronic wasting disease (CWD) in
 white-tailed deer at Shenandoah National Park (SHEN) in Virginia, USA. 3.
 Generally, for surveillance, risk of infection increased with age and was
 greater in males. Clinical suspect deer had the highest risk with weight
 estimates of 33.33 and 9.09, for community reported and hunter reported
 suspect deer, respectively, while fawns had the lowest risk with an
 estimated weight of 0.001. 4. We used surveillance weights for Wisconsin
 deer to determine sampling effort required to detect a CWD-positive case
 in SHEN if prevalence in yearling males ≥0.025. The sampling required to
 detect CWD was 37–91 adult deer, depending on the adult male:female ratio
 in the surveillance stream. We collected rectal biopsies from 49 and 21
 adult female and male deer, respectively, and 10 additional samples from
 vehicle-killed deer. CWD was not detected and we concluded with 95%
 probability that prevalence in the reference population (yearling males)
 was between 0.0 to 3.6%. 5. Synthesis and applications. Our approach
 allows managers to estimate relative surveillance weights for different
 host classes and quantify limits of disease detection in real time when
 only a sample of animals from a population can be tested, resulting in
 considerable cost savings for agencies performing wildlife disease
 detection surveillance. Additionally, it provides a rigorous means of
 estimating prevalence limits when a disease/pathogen is not detected in a
 sample set, and is generalizable to other wildlife, domestic animal, and
 human disease systems which can be characterized by surveillance classes
 with heterogeneous probability of infection. This methodology is also
 extendable to other disciplines such as invasive species, environmental
 toxicology, and generally any ecological question seeking to efficiently
 use scarce financial and human resources to maximize the detection
 probability of a rare event.
description: JAE_Dryad_dataThis file provides the input dataset for the estimation of class-specific CWD surveillance weights from Wisconsin's CWD management zone from 2003 to early 2010. Please read the README.txt file for more details.
DOI: 10.5281/zenodo.18174931
title: Effects of Multitype Team Diversity and Team Formation on Team Effectiveness [DATASET]

description: This repository contains supplementary materials for a study on team diversity, team formation methods, and team effectiveness in higher-education student teams.

Due to GDPR and institutional data protection requirements, individual-level student data cannot be publicly shared. To support transparency and reproducibility, the repository provides:

• A fully documented spreadsheet implementing the complete diversity-calculation pipeline used in the study, including normalized metrics for range, spread, separation, and disparity across different attribute types.• Python scripts used to compute correlation matrices and Fisher z-comparisons.• Synthetic illustration datasets that replicate the structure and approximate distributions of the original data without containing real student information.

Together, these materials enable researchers to reproduce the analytical workflow, understand how diversity indices were operationalized, and apply the same methods to other datasets.

Access to the original anonymized team-level dataset may be requested through the Ethics Committee of the University of Twente under a controlled data-use agreement.
DOI: 10.5061/dryad.v2432b2
title: Data from: Forgotten Mediterranean calving grounds of gray and North Atlantic right whales: evidence from Roman archaeological records

description: Right whales (Eubalaena glacialis) were extirpated from the eastern North
 Atlantic by commercial whaling. Gray whales (Eschrichtius robustus)
 disappeared from the entire North Atlantic in still-mysterious
 circumstances. Here we test the hypotheses that both of these species
 previously occurred in the Mediterranean Sea, an area not currently
 considered part of their historical range. We used ancient DNA barcoding
 and collagen fingerprinting methods to taxonomically identify a rare set
 of 10 presumed whale bones from Roman and pre-Roman archaeological sites
 in the Strait of Gibraltar region, plus an additional bone from the
 Asturian coast. We identified three right whales, and three gray whales,
 demonstrating that the ranges of both of these species historically
 encompassed the Gibraltar region, and likely including the Mediterranean
 Sea as calving grounds. Our results significantly extend the known range
 of the Atlantic gray whale, and suggest that 2,000 years ago right and
 gray whales were common when compared to other whale species. The
 disappearance of right and gray whales from the Mediterranean region is
 likely to have been accompanied by broader ecosystem impacts, including
 the disappearance of their predators (killer whales) and a reduction in
 marine primary productivity. The evidence that these two coastal and
 highly accessible species were present along the shores of the Roman
 Empire raises the hypotheses that they may have formed the basis of a
 forgotten whaling industry.
description: Rodrigues et al.
 Maldi-tof raw spectra
DOI: 10.5061/dryad.6rv7470
title: Data from: Schlieren photography on freely flying hawkmoth

description: The aerodynamic force on flying insects result from the vortical flow
 structures that vary both spatially and temporally throughout flight. Due
 to these complexities and the inherent difficulties in studying flying
 insects in a natural setting, a complete picture of the vortical flow has
 been difficult to obtain experimentally. In this paper, Schlieren, a
 widely used technique for highspeed flow visualization, was adapted to
 capture the vortex structures around freely flying hawkmoth (Manduca).
 Flow features such as leading-edge vortex, trailing-edge vortex as well as
 the full vortex system in the wake was visualized directly. Quantification
 of the flow from the Schlieren images was then obtained by applying a
 physics-based optical flow method, extending the potential applications of
 the method to further studies of flying insects.
description: 12.WMVVortex structure in
 up-stroke2.wmvSchlieren Setup
DOI: 10.60893/figshare.apl.30810812
title: Supplementary Material

description: Detail for the different magnetic configurations, the energies of these magnetic configurations, the effects of conventional control methods (strain and magnetic moment rotation) on electronic band structures and topological properties, as well as the dynamic evolution of Type-II and Type-III electronic band structures and topological properties with varying light intensity. In terms of Floquet engineering, the selection criteria for photon energies under different schemes and the impact of right-handed CPL on the Sc3C6O6 system are provided in detail. Furthermore, through comparisons with previous work, the experimental feasibility and advantages of our study are discussed.
DOI: 10.60893/figshare.apl.30810812.v1
title: Supplementary Material

description: Detail for the different magnetic configurations, the energies of these magnetic configurations, the effects of conventional control methods (strain and magnetic moment rotation) on electronic band structures and topological properties, as well as the dynamic evolution of Type-II and Type-III electronic band structures and topological properties with varying light intensity. In terms of Floquet engineering, the selection criteria for photon energies under different schemes and the impact of right-handed CPL on the Sc3C6O6 system are provided in detail. Furthermore, through comparisons with previous work, the experimental feasibility and advantages of our study are discussed.
DOI: 10.5061/dryad.bm44n75
title: Data from: Application of CRISPR/Cas9 to Tragopogon (Asteraceae), an evolutionary model for the study of polyploidy

description: Tragopogon (Asteraceae) is an excellent natural system for studies of
 recent polyploidy. Development of an efficient CRISPR/Cas9-based genome
 editing platform in Tragopogon will facilitate novel studies of the
 genetic consequences of polyploidy. Here, we report our initial results of
 developing CRISPR/Cas9 in Tragopogon. We have established a feasible
 tissue culture and transformation protocol for Tragopogon. Through
 protoplast transient assays, use of the TragCRISPR system (i.e. the
 CRISPR/Cas9 system adapted for Tragopogon) was capable of introducing
 site-specific mutations in Tragopogon protoplasts. Agrobacterium-mediated
 transformation with Cas9-sgRNA constructs targeting the phytoene
 desaturase gene (TraPDS) was implemented in this model polyploid system.
 Sequencing of PCR amplicons from the target regions indicated simultaneous
 mutations of two alleles and four alleles of TraPDS in albino shoots from
 T. porrifolius (2x) and T. mirus (4x), respectively. The average
 proportions of successfully transformed calli with the albino phenotype
 were 87% and 78% in the diploid and polyploid, respectively. This appears
 to be the first demonstration of CRISPR/Cas9-based genome editing in any
 naturally formed neopolyploid system. Although a more efficient tissue
 culture system should be developed in Tragopogon, application of a robust
 CRISPR/Cas9 system will permit unique studies of biased fractionation, the
 gene-balance hypothesis and cytonuclear interactions in polyploids. In
 addition, the CRISPR/Cas9 platform enables investigations of those genes
 involved in phenotypic changes in polyploids and will also facilitate
 novel functional biology studies in Asteraceae. Our workflow provides a
 guide for applying CRISPR/Cas9 to other non-genetic model plant systems.
description: Sequencing results of
 TraPDS from regenerated shootsGenomic DNAs from
 regenerated shoots of Tragopogon porrifolius and Tragopogon mirus were
 extracted. Primers TraPDS-F1 and TraPDS-R2 were used to amplify the
 fragment covering the CRISPR/Cas9 target sites within the TraPDS gene. PCR
 amplicons were sequenced using primer TraPDS-F1.Shared_Tragopogon_reads_for_consensus_cDNA_assembly_of_TraPDSBLAST search against the T. dubius transcriptome identified 17, 21, and 19 full-length cDNA sequences of T. dubius with high similarity and coverage to PDS cDNA from Vitis vinifera, Helianthus annuus, and Gerbera hybrida, respectively. Sixteen of these sequences were shared among the three species. De novo assembly of these 16 sequences generated a consensus cDNA of TraPDS gene.Consensus_cDNA_TraPDSDe novo assembly of 16 cDNA sequences from T. dubius generated a consensus cDNA of TraPDS with the length of 2,147 bases.Consensus_genomic_sequence_TraPDSPCR products of two pairs of primers (TraPDS-F1 and TraPDS-R1; TraPDS-F2 and TraPDS-R2) from T. dubius and T. porrifolius were de novo assembled, and a consensus genomic sequence was obtained with a length of 1,631 bases.
DOI: 10.5281/zenodo.18351599
title: INRIM_Brand1_400F_4_23C_0k_EDLC_single

description: MetSuperCap Project Dataset 400F SC sample 4 INRIM   - EDLC Single - Brand1

Part of the Constant Temperature DataBase
DOI: 10.5281/zenodo.18351600
title: INRIM_Brand1_400F_4_23C_0k_EDLC_single

description: MetSuperCap Project Dataset 400F SC sample 4 INRIM   - EDLC Single - Brand1

Part of the Constant Temperature DataBase
DOI: 10.5061/dryad.f41b11f
title: Data from: Order of herbivore arrival on wild cabbage populations influences subsequent arthropod community development

description: In plant-arthropod associations, the first herbivores to colonise a plant
 may directly or indirectly affect community assembly on that particular
 plant. Whether the order of arrival of different arthropod species further
 modulates community assembly and affects plant fitness remains unclear.
 Using wild Brassica oleracea plants in the field, we manipulated the order
 of arrival of early-season herbivores that belong to different feeding
 guilds, namely the aphid Brevicoryne brassicae and caterpillars of
 Plutella xylostella. We investigated the effect of herbivore identity and
 order of arrival on community assembly on two B. oleracea plant
 populations during two growth seasons. For this perennial plant, we
 evaluated whether foliar herbivory also affected herbivore communities on
 the flowers and if these interactions affected plant seed production.
 Aphid infestation caused an increase in parasitoid abundance, but
 caterpillars modulated these effects, depending on the order of herbivore
 infestation and plant population. In the second growth season, when plants
 flowered, the order of infestation of leaves with aphids and caterpillars
 more strongly affected abundance of herbivores feeding on the flowers than
 those feeding on leaves. Infestation with caterpillars followed by aphids
 caused an increase in flower-feeding herbivores compared to the reversed
 order of infestation in one plant population, whereas the opposite effects
 were observed for the other plant population. The impact on plant seed set
 in the first reproductive year was limited. Our work shows that the
 identity and arrival order of early season herbivores may have long-term
 consequences for community composition on individual plants and that these
 patterns may vary among plant populations. We discuss how these community
 processes may affect plant fitness and speculate on the implications for
 evolution of plant defences.
description: Full dataset Stam, Dicke
 PoelmanThis datafile and its
 folders contain all data presented in the publication. A short read me is
 included in the file.Full dataset
 Stam.xlsx
DOI: 10.5061/dryad.pd44k8r
title: Data from: Dynamically prognosticating patients with hepatocellular carcinoma through survival paths mapping based on time-series data

description: Patients with hepatocellular carcinoma (HCC) always require routine
 surveillance and repeated treatment, which leads to accumulation of huge
 amount of clinical data. A predictive model utilizes the time-series data
 to facilitate dynamic prognosis prediction and treatment planning is
 warranted. Here we introduced an analytical approach, which converts the
 time-series data into a cascading survival map, in which each survival
 path bifurcates at fixed time interval depending on selected prognostic
 features by the Cox-based feature selection. We apply this approach in an
 intermediate-scale database of patients with BCLC stage B HCC and get a
 survival map consisting of 13 different survival paths, which is
 demonstrated to have superior or equal value than conventional staging
 systems in dynamic prognosis prediction from 3 to 12 months after initial
 diagnosis in derivation, internal testing, and multicentric testing
 cohorts. This methodology/model could facilitate dynamic prognosis
 prediction and treatment planning for patients with HCC in the future.
description: Time Series Clinical
 Data for patients with BCLC stage B Hepatocellular
 carcinomaThis database contain
 three independent electronic forms, which includes the time-series
 clinical data and survival outcome of patient with BCLC stage B
 hepatocellular carcinoma, with an time interval of three months. The
 derivation cohort includes 979 patients, the internal validation cohort
 includes 627 patients, and the multicentric validation cohort includes 414
 patients. All the categorical variables were annotated.Dryad_English_Raw.xlsxStrategy in Construction of Survival Path of HCC patients manuallyThis picture illustrate how we construct the survival path system of patients using time-series data manually.Network Frame for Survival Path.tiff