cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23707848
title: Supplementary Material for: The Ghent Psychotherapy Study (GPS): a pragmatic, stratified, randomized parallel trial into the differential efficacy of psychodynamic and cognitive-behavioral interventions in dependent and self-critical depressive patients

description: Introduction: Different types of psychotherapy are effective for treating major depressive disorder across groups yet show large within-group differences. Patient personality style is considered a potentially useful variable for treatment matching. Objective: This study is the first experimental test of the interaction between therapeutic approach and patients’ dependent versus self-critical personality styles. Methods: A pragmatic stratified parallel trial was carried out with 100 adult patients diagnosed with DSM-IV-TR Major Depressive Disorder. They were randomly assigned to short-term (16–20 sessions) Cognitive Behavioral Therapy (CBT) or Short-Term Psychodynamic Psychotherapy (STPP). Patients were assessed at baseline, during therapy, post therapy, and 3 and 6-month follow-up. Primary outcome is depression severity measured by the Hamilton Rating Scale for Depression post treatment. Primary analysis was by intention to treat. This trial is registered with the ISRCTN registry (www.isrctn.com), number ISRCTN17130982. Results: The intention-to-treat sample consisted of 100 participants; 40 with self-critical and 60 with dependent personality styles were randomized to either CBT (n=50) or STPP (n=50). We observed no interaction effect (–0·34 (–6·14,5·46)) between therapy and personality style and found no evidence for a difference in effectiveness between the treatments in general in terms of symptom reduction and maintained benefits at 6-month follow-up. Conclusion: We found no evidence that dependent versus self-critical personality styles moderate the relation between treatment and outcome in depression. Research using individual patient data could gain further insight into why specific therapeutic approaches work better for specific patients.
DOI: 10.6084/m9.figshare.23318891
title: Supplementary Material for: The nutritional quality of gluten-free vs. non-gluten-free pre-packaged foods and beverages sold in Hong Kong

description: Introduction: The consumption of gluten-free foods has continued to increase in recent years. Given their higher intake amongst individuals both with or without a medically diagnosed gluten allergy or sensitivity, it is important to understand how the nutritional quality of these foods compares against non-gluten-free foods. As such, we aimed to compare the nutritional quality of gluten-free and non-gluten-free pre-packaged foods sold in Hong Kong. Methods: Data from 18,292 pre-packaged food and beverage items in the 2019 FoodSwitch Hong Kong database were used. These products were categorized as (1) “declared gluten-free”; (2) “gluten-free by ingredient or naturally gluten-free” and (3) "non-gluten-free” according to information presented on the package. One way ANOVA was used to compare the differences in the Australian Health Star Rating (HSR), energy, protein, fibre, total fat, saturated fat, trans-fat, carbohydrates, sugars and sodium content between products in different gluten categories, overall and by major food category (e.g., bread and bakery products) and region of origin (e.g., America, Europe). Results: Products declared gluten-free (mean ± SD: 2.9 ± 1.3; n = 7%) had statistically significantly higher HSR than those gluten-free by ingredient or naturally gluten-free (2.7 ± 1.4; n = 51.9%) and non-gluten-free (2.2 ± 1.4; n = 41.2%) (all pairwise comparisons p &lt; 0.001). Overall, non-gluten-free products have higher energy, protein, saturated fat, trans-fat, free sugar and sodium, and less fibre compared with products in the other two gluten categories. Similar differences were observed across major food groups and by region of origin. Conclusions: Non-gluten-free products sold in Hong Kong were generally less healthy than gluten-free products (regardless of presence of gluten-free declaration). Consumers should be better educated on how to identify gluten-free foods given many gluten-free foods do not declare this information on the label.
DOI: 10.5519/qd.knexycpn
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (99 records)
DOI: 10.6084/m9.figshare.23098475
title: Supplementary Material for: Multimodal integrative genomics and pathology analyses in neoadjuvant nivolumab treatment for intermediate and locally-advanced HCC

description: Introduction: Immunotherapy has resulted in pathologic responses in hepatocellular carcinoma (HCC) but the benefits and molecular mechanisms of neoadjuvant immune checkpoint blockade are largely unknown. Methods: In this study, we evaluated the efficacy and safety of pre-operative nivolumab (anti-PD1) in patients with intermediate and locally-advanced HCC and determined the molecular markers for predicting treatment response. Results: Between July 2020 and November 2021, 20 treatment-naïve HCC patients with intermediate and locally advanced tumors received preoperative nivolumab at 3 mg/kg for 3 cycles prior to surgical resection. Nineteen patients underwent surgical resection on-trial. Seven (36.8%) of the 19 patients had major pathologic tumor necrosis (≥60%) in the post-nivolumab resection specimens, with 3 having almost complete (&gt;90%) tumor necrosis. The tumor necrosis was hemorrhagic and often accompanied with increased or dense immune cell infiltrate at the border of the tumors. None of the patients developed major adverse reactions contradicting hepatectomy. RNA-sequencing analysis on both pre-nivolumab tumor biopsies and post- nivolumab resected specimens showed, in cases with major pathologic necrosis, the proportion of CD8 T cells in the HCC tissues predominantly increased after treatment. Moreover, to investigate non-invasive biomarker for nivolumab response, we evaluated the copy number variation (CNV) using target-panel sequencing on plasma cell-free DNA of the patients and derived a CNV-based anti-PD1 score. The score correlated with the extent of tumor necrosis and was validated in a Korean patient cohort with anti-PD1 treatment. Conclusion: Neoadjuvant nivolumab demonstrated promising clinical activity in intermediate and locally-advanced HCC patients. We also identified useful non-invasive biomarker predicting responsiveness.
DOI: 10.6084/m9.figshare.23866962.v43
title: Untitled Item

description: Regridding Global CMIP6 GCMs dataset(0.5 degree)Historical dataset: 7 CMIP6 GCMs (1850-2014, ACCESS-CM2 to GFDL-ESM4)Future dataset: 7 CMIP6 GCMs and 4 SSP scenarios (2015-2100)Composition of dataset: Average temperature, Maximum temperature, Minimum temperature, Windspeed, Relative humidity, Solar radiationIf you are using our codes and dataset, please use the following references:Song, Y.H., Chung, E.S., Shahid, S., Kim, Y.J., Kim, D.K. 2023. Development of global monthly dataset of CMIP6 climate variables for estimating evapotranspiration. Scientific Data.<br>
DOI: 10.6073/pasta/920c1ed3f4a3fefb51f49eb8ee286b4f
title: Fluridone treatment data and SAV cover across the Sacramento - San Joaquin Delta (2014-2018)

description: In the Sacramento - San Joaquin Delta, California spends millions of dollars each year to treat submerged aquatic vegetation (SAV) such as Egeria densa and Myriophyllum spicatum. We integrated four different datasets to examine the efficacy of SAV treatment using fluridone over five years (2014-2018) across the entire ecosystem. For 132 sites across the Delta, we collated annual information on whether a site was treated, the amount of fluridone sprayed per site per unit area of SAV, consecutive years of treatment, and water speed within the site. This dataset was analyzed and the results of the analysis were published in a paper in Biological Invasions (https://link.springer.com/article/10.1007/s10530-023-03013-7).
DOI: 10.5281/zenodo.8137772
title: Assessing the bioreceptivity of biobased cladding materials

description: Raw data used to generate figures in "Assessing the bioreceptivity of biobased cladding materials". The sheet "reference samples" refers to unweathered samples, the sheet "1 month swab" refers to data obtained from swabbing the materials after one month of exposure. All experimental procedures are detailed in the manuscript. Code is available upon request.
description: Please add the following grant: WoodLCC, which is supported under the umbrella of ERA-NET Cofund ForestValue by the Ministry of Education, Science and Sport (MIZS)—Slovenia. Grant number: 773324.
DOI: 10.5281/zenodo.8137771
title: Assessing the bioreceptivity of biobased cladding materials

description: Raw data used to generate figures in "Assessing the bioreceptivity of biobased cladding materials". The sheet "reference samples" refers to unweathered samples, the sheet "1 month swab" refers to data obtained from swabbing the materials after one month of exposure. All experimental procedures are detailed in the manuscript. Code is available upon request.
description: Please add the following grant: WoodLCC, which is supported under the umbrella of ERA-NET Cofund ForestValue by the Ministry of Education, Science and Sport (MIZS)—Slovenia. Grant number: 773324.
DOI: 10.6084/m9.figshare.23585115.v1
title: Supplementary Material for: Three-dimensional Ultrasound Evaluation of Lung Volume in Fetuses with Abdominal Wall Defect

description: Introduction: Abdominal wall defects (AWD) interfere with postnatal respiratory parameters. We aimed to evaluate lung volume (LV) in fetuses with AWD using three-dimensional (3D) ultrasound (US) and to correlate AWD with the type (omphalocele and gastroschisis) and size of the defect and neonatal morbidity and mortality. Methods: This prospective study included 72 pregnant women with fetuses with AWD and a gestational age &lt;25 weeks. Abdominal volume, 3D US LV, and herniated volume were acquired every 4 weeks up to 33 weeks. LV was compared with normal reference curves and correlated with abdominal and herniated volumes. Results: Omphalocele (p&lt;0.001) and gastroschisis (p&lt;0.001) fetuses had smaller LV than did normal fetuses. LV was positively correlated with abdominal volume (omphalocele, r=0.86; gastroschisis, r=0.88), whereas LV was negatively correlated with omphalocele-herniated volume/abdominal volume (p&lt;0.001, r= -0.51). LV was smaller in omphalocele fetuses that died (p=0.002), were intubated (p=0.02), or had secondary closure (p&lt;0.001). In gastroschisis, a smaller LV was observed in fetuses discharged using oxygen (p=0.002). Discussion/Conclusion: Fetuses with AWD had smaller 3D LV than normal fetuses. Fetal abdominal volume was inversely correlated with LV. In omphalocele fetuses, a smaller LV was associated with neonatal mortality and morbidity.
DOI: 10.5066/p9330bxm
title: Water Quality and Streamflow Data for the Clark Fork near Grant-Kohrs Ranch National Historic Site in Southwestern Montana, Water Years 2019 - 2020

description: In 2019, the U.S. Geological Survey (USGS), in cooperation with the National Park Service(NPS), initiated a study using surrogate technology to predict real-time metallic-contaminant concentrations (MCCs) in the Clark Fork at two USGS streamgages that bracket Grant-Kohrs Ranch National Historic Site (GRKO) near Deer Lodge, Montana. Clark Fork at Deer Lodge (streamgage 12324200), Mont., about one mile upstream from GRKO, and Clark Fork above Little Blackfoot River near Garrison (streamgage 12324400), Mont., about 12 miles downstream from GRKO property were instrumented with turbidity and acoustic sensors for monitoring the Clark Fork during NPS Superfund remediation activities. Time-series data from backscatter signals from fixed-point turbidity and acoustic sensors were correlated with discrete MCC samples collected from the Clark Fork and were used as surrogates for estimating real-time cadmium, copper, iron, lead, manganese, zinc, and the metalloid trace element arsenic. A stepwise regression approach was used to develop statistical models to predict MCCs based on instantaneous values of turbidity and acoustic backscatter. Simple linear regression (SLR) models using turbidity as the sole explanatory variable produced the best models with R-squared values exceeding 0.90 in 9 of 12 models. Nash-Sutcliffe Efficiency values were used to evaluate the effectiveness of predictive models to approximate measured MCCs, and model biases were calculated as an additional check on model accuracy. The R-LOADEST statistical package was used to compute annual and daily metallic-contaminant loads (MCLs) along with 95-percent prediction intervals. R-LOADEST loads were compared to time-series computed loads to evaluate the applicability of time-series data for calculating daily and annual MCLs. Results from annual load estimates indicated an increase in loads for all metallic contaminants between the two monitoring sites. These results provided real-time information to NPS management for evaluating variation in water quality during Superfund remediation, comparing MCC values relative to aquatic life standards, and will help quantify benefits from NPS remediation activities.
DOI: 10.6084/m9.figshare.23617230
title: Supplementary Material for: Intimal injury potentially plays a key role in the formation of carotid artery dissection: a novel animal model establishing

description: Research on the pathophysiological mechanism of carotid artery dissection and its clinical translation is limited due to the lack of effective animal models to simulate the occurrence of this condition. Assuming that intimal injury is an important factor in the formation of carotid dissection, we established a novel method for inducing carotid dissection models by scraping the carotid intima using a fine needle. Scraping the carotid intima with fine needles can induce the rapid formation of carotid dissection. Magnetic resonance imaging and Hematoxylin-Eosin staining suggest the presence of false lumens and mural hematomas in the vessels. Our model-induction technique, inspired by iatrogenic catheter-induced artery dissections (carotid, coronary, aortic), significantly mimics the pathological process of clinical carotid dissection. The results suggest that mechanical injury may be a significant cause of carotid dissection, and that intimal injury is a major factor in the formation of arterial dissections. This approach will provide assistance in the understanding of medically induced arterial dissection.
DOI: 10.6084/m9.figshare.23617230.v1
title: Supplementary Material for: Intimal injury potentially plays a key role in the formation of carotid artery dissection: a novel animal model establishing

description: Research on the pathophysiological mechanism of carotid artery dissection and its clinical translation is limited due to the lack of effective animal models to simulate the occurrence of this condition. Assuming that intimal injury is an important factor in the formation of carotid dissection, we established a novel method for inducing carotid dissection models by scraping the carotid intima using a fine needle. Scraping the carotid intima with fine needles can induce the rapid formation of carotid dissection. Magnetic resonance imaging and Hematoxylin-Eosin staining suggest the presence of false lumens and mural hematomas in the vessels. Our model-induction technique, inspired by iatrogenic catheter-induced artery dissections (carotid, coronary, aortic), significantly mimics the pathological process of clinical carotid dissection. The results suggest that mechanical injury may be a significant cause of carotid dissection, and that intimal injury is a major factor in the formation of arterial dissections. This approach will provide assistance in the understanding of medically induced arterial dissection.
DOI: 10.5281/zenodo.8139020
title: Cipher Machine Hagelin H-4605 (Inv. 2017-391)

description: This dataset represents the computed tomography image acquisition of a historical cipher machine from the collection of the Deutsches Museum. It is composed of CT reconstructed image stacks in the DICOM (.dcm) format.<br> It can be imported in any free or propietary CT-Viewer that supports the DICOM standard to generated 2D and 3D imaging.<br> If segmentations/ROIs are availabe, they are uploaded in a seperate image stacks and are a subset of the scanned cipher machine. object details:<br> name: Hagelin H-4605<br> Inv.-No. of the Deutsches Museum: 2017-391 file object details:<br> file format: image/dcm<br> pixel spacing unit: mm<br> X pixel spacing: 0.181<br> Y pixel spacing: 0.181<br> Z pixel spacing: 0.181<br> grid size x: 2158<br> grid size y: 1758<br> grid size z: 1053<br> color depth: 16Bit ownership & image acquisition:<br> project: 3D-Cipher<br> collection: Deutsches Museum<br> IP holder: Deutsches Museum<br> license: Creative Commons BY-SA 4.0<br> scanning facility: Fraunhofer Development Center X-ray Technology EZRT/Fraunhofer IIS<br> scanning device: High Energy CT XXL-CT<br> Funding attribution: German Federal Ministry of Education and Research<br> acknowledgement: CryptoMuseum (as main source for informations about the cipher machines)
description: Funding: German Federal Ministry of Education and Research (BMBF), grant programme: eHeritage.
DOI: 10.5281/zenodo.8139019
title: Cipher Machine Hagelin H-4605 (Inv. 2017-391)

description: This dataset represents the computed tomography image acquisition of a historical cipher machine from the collection of the Deutsches Museum. It is composed of CT reconstructed image stacks in the DICOM (.dcm) format.<br> It can be imported in any free or propietary CT-Viewer that supports the DICOM standard to generated 2D and 3D imaging.<br> If segmentations/ROIs are availabe, they are uploaded in a seperate image stacks and are a subset of the scanned cipher machine. object details:<br> name: Hagelin H-4605<br> Inv.-No. of the Deutsches Museum: 2017-391 file object details:<br> file format: image/dcm<br> pixel spacing unit: mm<br> X pixel spacing: 0.181<br> Y pixel spacing: 0.181<br> Z pixel spacing: 0.181<br> grid size x: 2158<br> grid size y: 1758<br> grid size z: 1053<br> color depth: 16Bit ownership & image acquisition:<br> project: 3D-Cipher<br> collection: Deutsches Museum<br> IP holder: Deutsches Museum<br> license: Creative Commons BY-SA 4.0<br> scanning facility: Fraunhofer Development Center X-ray Technology EZRT/Fraunhofer IIS<br> scanning device: High Energy CT XXL-CT<br> Funding attribution: German Federal Ministry of Education and Research<br> acknowledgement: CryptoMuseum (as main source for informations about the cipher machines)
description: Funding: German Federal Ministry of Education and Research (BMBF), grant programme: eHeritage.
DOI: 10.5281/zenodo.8141822
title: Cipher Machine Mils Elektronik PCCM 4000 (Inv. 2017-399)

description: This dataset represents the computed tomography image acquisition of a historical cipher machine from the collection of the Deutsches Museum. It is composed of CT reconstructed image stacks in the DICOM (.dcm) format.<br> It can be imported in any free or propietary CT-Viewer that supports the DICOM standard to generated 2D and 3D imaging.<br> If segmentations/ROIs are availabe, they are uploaded in a seperate image stacks and are a subset of the scanned cipher machine. object details:<br> name: Mils Elektronik PCCM 4000<br> Inv.-No. of the Deutsches Museum: 2017-399 file object details:<br> file format: image/dcm<br> pixel spacing unit: mm<br> X pixel spacing: 0.154<br> Y pixel spacing: 0.154<br> Z pixel spacing: 0.154<br> grid size x: 728<br> grid size y: 222<br> grid size z: 1081<br> color depth: 16Bit ownership & image acquisition:<br> project: 3D-Cipher<br> collection: Deutsches Museum<br> IP holder: Deutsches Museum<br> license: Creative Commons BY-SA 4.0<br> scanning facility: Fraunhofer Development Center X-ray Technology EZRT/Fraunhofer IIS<br> scanning device: High Energy CT XXL-CT<br> Funding attribution: German Federal Ministry of Education and Research<br> acknowledgement: CryptoMuseum (as main source for informations about the cipher machines)
description: Funding: German Federal Ministry of Education and Research (BMBF), grant programme: eHeritage.
DOI: 10.5281/zenodo.8141821
title: Cipher Machine Mils Elektronik PCCM 4000 (Inv. 2017-399)

description: This dataset represents the computed tomography image acquisition of a historical cipher machine from the collection of the Deutsches Museum. It is composed of CT reconstructed image stacks in the DICOM (.dcm) format.<br> It can be imported in any free or propietary CT-Viewer that supports the DICOM standard to generated 2D and 3D imaging.<br> If segmentations/ROIs are availabe, they are uploaded in a seperate image stacks and are a subset of the scanned cipher machine. object details:<br> name: Mils Elektronik PCCM 4000<br> Inv.-No. of the Deutsches Museum: 2017-399 file object details:<br> file format: image/dcm<br> pixel spacing unit: mm<br> X pixel spacing: 0.154<br> Y pixel spacing: 0.154<br> Z pixel spacing: 0.154<br> grid size x: 728<br> grid size y: 222<br> grid size z: 1081<br> color depth: 16Bit ownership & image acquisition:<br> project: 3D-Cipher<br> collection: Deutsches Museum<br> IP holder: Deutsches Museum<br> license: Creative Commons BY-SA 4.0<br> scanning facility: Fraunhofer Development Center X-ray Technology EZRT/Fraunhofer IIS<br> scanning device: High Energy CT XXL-CT<br> Funding attribution: German Federal Ministry of Education and Research<br> acknowledgement: CryptoMuseum (as main source for informations about the cipher machines)
description: Funding: German Federal Ministry of Education and Research (BMBF), grant programme: eHeritage.
DOI: 10.5281/zenodo.8141915
title: Cipher Machine Transvertex HC-9 (Inv. 2017-401)

description: This dataset represents the computed tomography image acquisition of a historical cipher machine from the collection of the Deutsches Museum. It is composed of CT reconstructed image stacks in the DICOM (.dcm) format.<br> It can be imported in any free or propietary CT-Viewer that supports the DICOM standard to generated 2D and 3D imaging.<br> If segmentations/ROIs are availabe, they are uploaded in a seperate image stacks and are a subset of the scanned cipher machine. object details:<br> name: Transvertex HC-9<br> Inv.-No. of the Deutsches Museum: 2017-401 file object details:<br> file format: image/dcm<br> pixel spacing unit: mm<br> X pixel spacing: 0.144<br> Y pixel spacing: 0.144<br> Z pixel spacing: 0.144<br> grid size x: 1428<br> grid size y: 672<br> grid size z: 1050<br> color depth: 16Bit ownership & image acquisition:<br> project: 3D-Cipher<br> collection: Deutsches Museum<br> IP holder: Deutsches Museum<br> license: Creative Commons BY-SA 4.0<br> scanning facility: Fraunhofer Development Center X-ray Technology EZRT/Fraunhofer IIS<br> scanning device: High Energy CT XXL-CT<br> Funding attribution: German Federal Ministry of Education and Research<br> acknowledgement: CryptoMuseum (as main source for informations about the cipher machines)
description: Funding: German Federal Ministry of Education and Research (BMBF), grant programme: eHeritage.