cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/a35-1w2-vk6
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mdf-dl2-h0j
title: Rhinoptera

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gjs-yhc-c96
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j4t-rmp-spz
title: Arthropoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/flz-gdc-3rv
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9bb-hgt-aq8
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ael-2m6-wdl
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7dq-365-rjk
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rz8-h1t-a84
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s49-r1w-x07
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tbc-1mg-rxn
title: Thomasomys Coues, 1884

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w0v-rjc-62m
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6z7-nle-bgs
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hes-kfb-06c
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.2auz9g
title: Occurrence Download

description: A dataset containing 15649 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphibalanus improvisus",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15649 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012477-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/ql3-mce-c16
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/py6-xlj-mpx
title: Anatidae Leach, 1820

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sb8-yvt-7xw
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/995-gg7-m54
title: Atlantoxerus Forsyth Major, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z91-jq7-sjh
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dc9-5d6-s66
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j23-nay-n1y
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nx2-gjy-dlr
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x6j-pps-aw7
title: †Astraraea media (Sowerby, 1832)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b0k-wsn-p08
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/49l-shj-h9g
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d08-stg-8vc
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h61-cs9-f0n
title: Cervus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t2w-0m2-91y
title: †Prolagus Pomel, 1853

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tph-s0e-2gp
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.fth4wu
title: Occurrence Download

description: A dataset containing 5753581 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spatula clypeata"
 ]
}

 The dataset includes 5753581 records from 1742 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012376-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4qyvg
title: Occurrence Download

description: A dataset containing 141241 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lacerta agilis Linnaeus, 1758)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 141241 records from 695 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088930-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3edcrn
title: Occurrence Download

description: A dataset containing 204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Juncus firmus L.A.S.Johnson)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 204 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088939-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d7qvqk
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dalbergia congesta Graham ex Wight & Arn."
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088940-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngu3xu
title: Occurrence Download

description: A dataset containing 1059 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Juncus vaginatus R.Br.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1059 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088942-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ykac5e
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dalbergia rubiginosa Roxb."
 ]
}

 The dataset includes 51 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088943-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3w9brp
title: Occurrence Download

description: A dataset containing 19501 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-106.57301 -35.04163,13.57301 -35.04163,13.57301 13.04163,-106.57301 13.04163,-106.57301 -35.04163))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cantorchilus longirostris (Vieillot, 1819)"
 ]
}

 The dataset includes 19501 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088944-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrm5pm
title: Occurrence Download

description: A dataset containing 194 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dalbergia nigrescens Kurz"
 ]
}

 The dataset includes 194 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088945-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zzpz6q
title: Occurrence Download

description: A dataset containing 782 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Juncus anthelatus (Wiegand) R.E.Brooks)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 782 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088946-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hcg7sy
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dalbergia tonkinensis Prain"
 ]
}

 The dataset includes 55 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088947-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7879228
title: Inference of cell type-specific gene regulatory networks on cell lineages from single cell omic datasets

description: The uploaded files are source datasets for the scMTNI algorithm. scMTNI is a multi-task learning framework that integrates the cell lineage structure, scRNA-seq and scATAC-seq measurements to enable joint inference of cell type-specific GRNs. See more details at Preprint: https://biorxiv.org/cgi/content/short/2022.07.25.501350v1. The source data scMTNI_sourcedata.tar.gz contain the following 3 parts: 1) The cluster-specific scRNA-seq matrices and the prior networks for all three datasets and scMTNI inferred consensus networks. 2) Gold standard human and mouse datasets for evaluation. 3) Source data for scMTNI figures 2-8 and supplementary figures. The key for each figure and its corresponding file path is in SourceData_Key_v2.xlsx. The source data Buenrostro_Hematopoiesis.tar.gz contains the scRNA-seq data for human hematopoietic differentiation downloaded from Data S2 of Buenrostro et al.
DOI: 10.5281/zenodo.7834742
title: Inference of cell type-specific gene regulatory networks on cell lineages from single cell omic datasets

description: The uploaded files are source datasets for the scMTNI algorithm. scMTNI is a multi-task learning framework that integrates the cell lineage structure, scRNA-seq and scATAC-seq measurements to enable joint inference of cell type-specific GRNs. See more details at Preprint: https://biorxiv.org/cgi/content/short/2022.07.25.501350v1. The source data contain the following 3 parts: 1) The cluster-specific scRNA-seq matrices and the prior networks for all three datasets and scMTNI inferred consensus networks. 2) Gold standard human and mouse datasets for evaluation. 3) Source data for scMTNI figures 2-8 and supplementary figures. The key for each figure and its corresponding file path is in SourceData_Key_v2.xlsx.
DOI: 10.15468/dl.8f45mz
title: Occurrence Download

description: A dataset containing 2221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Juncus filicaulis Buchenau)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2221 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088948-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.941807
title: 40Ar/39Ar ages from muscovite collected from the Marsyangdi valley of central Nepal
DOI: 10.5281/zenodo.7834741
title: Inference of cell type-specific gene regulatory networks on cell lineages from single cell omic datasets

description: The uploaded files are source datasets for the scMTNI algorithm. scMTNI is a multi-task learning framework that integrates the cell lineage structure, scRNA-seq and scATAC-seq measurements to enable joint inference of cell type-specific GRNs. See more details at Zhang, S., Pyne, S., Pietrzak, S. et al. Inference of cell type-specific gene regulatory networks on cell lineages from single cell omic datasets. Nat Commun 14, 3064 (2023). https://doi.org/10.1038/s41467-023-38637-9

The source data scMTNI_sourcedata.tar.gz contains the following 3 parts:

1) The cluster-specific scRNA-seq matrices and the prior networks for all three datasets and scMTNI inferred consensus networks.

2) Gold standard human and mouse datasets for evaluation.

3) Source data for scMTNI figures 2-8 and supplementary figures. The key for each figure and its corresponding file path is in SourceData_Key_v2.xlsx.

The source data Buenrostro_Hematopoiesis.tar.gz contains the scRNA-seq data for human hematopoietic differentiation downloaded from Data S2 of Buenrostro et al.

The source data RawMotifFiles.tar.gz contains the motif instance files and promoter files for human and mouse for generating prior networks using scATAC-seq data for scMTNI. Check https://github.com/Roy-lab/scMTNI/blob/master/Scripts/genPriorNetwork/readme.md for examples and scripts.

The Buenrostro_priorNetwork_bamfiles.tar.gz contains the raw bam files of scATAC-seq data for human hematopoietic differentiation downloaded from Buenrostro et al.
DOI: 10.5281/zenodo.8323399
title: Inference of cell type-specific gene regulatory networks on cell lineages from single cell omic datasets

description: The uploaded files are source datasets for the scMTNI algorithm. scMTNI is a multi-task learning framework that integrates the cell lineage structure, scRNA-seq and scATAC-seq measurements to enable joint inference of cell type-specific GRNs. See more details at Zhang, S., Pyne, S., Pietrzak, S. et al. Inference of cell type-specific gene regulatory networks on cell lineages from single cell omic datasets. Nat Commun 14, 3064 (2023). https://doi.org/10.1038/s41467-023-38637-9 The source data scMTNI_sourcedata.tar.gz contains the following 3 parts: 1) The cluster-specific scRNA-seq matrices and the prior networks for all three datasets and scMTNI inferred consensus networks. 2) Gold standard human and mouse datasets for evaluation. 3) Source data for scMTNI figures 2-8 and supplementary figures. The key for each figure and its corresponding file path is in SourceData_Key_v2.xlsx. The source data Buenrostro_Hematopoiesis.tar.gz contains the scRNA-seq data for human hematopoietic differentiation downloaded from Data S2 of Buenrostro et al. The source data RawMotifFiles.tar.gz contains the motif instance files and promoter files for human and mouse for generating prior networks using scATAC-seq data for scMTNI. Check https://github.com/Roy-lab/scMTNI/blob/master/Scripts/genPriorNetwork/readme.md for examples and scripts.
DOI: 10.15468/dl.q52efz
title: Occurrence Download

description: A dataset containing 350 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Juncus polycephalus Michx.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 350 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088949-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q5jvh6
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Living Specimen, Occurrence evidence, Specimen)",
 "Continent is South America",
 "Country is one of (Argentina, Peru, Bolivia (Plurinational State of))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hippocamelus antisensis (d'Orbigny, 1834)"
 ]
}

 The dataset includes 58 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088952-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2gcgc7
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dalbergia sympathetica Nimmo"
 ]
}

 The dataset includes 19 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088951-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.941803
title: 40Ar/39Ar ages from hornblende collected from the Marsyangdi valley of central Nepal
DOI: 10.15468/dl.kveba5
title: Occurrence Download

description: A dataset containing 114 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dalbergia stevensonii Standl."
 ]
}

 The dataset includes 114 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088953-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93c9ew
title: Occurrence Download

description: A dataset containing 2451 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dalbergia miscolobium Benth."
 ]
}

 The dataset includes 2451 records from 157 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088954-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tadh7j
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((30.81456 -24.07107,66.18544 -24.07107,66.18544 -9.92893,30.81456 -9.92893,30.81456 -24.07107))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Calanthe madagascariensis Rolfe ex Hook.f."
 ]
}

 The dataset includes 21 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088955-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ncmrxy
title: Occurrence Download

description: A dataset containing 59111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Canis lupus familiaris Linnaeus, 1758)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 59111 records from 335 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088941-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pj4tz4
title: Occurrence Download

description: A dataset containing 473 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dalbergia spruceana Benth."
 ]
}

 The dataset includes 473 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088956-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n5ke3b
title: Occurrence Download

description: A dataset containing 195 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Vulpes vulpes schrencki Kishida, 1924)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 195 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088957-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8bgwv9
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Vulpes vulpes ichnusae Miller, 1907)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 34 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088958-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vjv9wg
title: Occurrence Download

description: A dataset containing 856 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Urocyon littoralis santacruzae Merriam, 1903)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 856 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088959-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11191781
title: Data for: High-throughput micro-CT analysis identifies sex-dependent biomarkers of erosive arthritis in TNF-Tg mice and differential response to anti-TNF therapy
DOI: 10.5281/zenodo.11191782
title: Data for: High-throughput micro-CT analysis identifies sex-dependent biomarkers of erosive arthritis in TNF-Tg mice and differential response to anti-TNF therapy
DOI: 10.15468/dl.wq5uvh
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Prionailurus bengalensis javanensis (Desmarest, 1816))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 123 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088960-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bydfd4
title: Occurrence Download

description: A dataset containing 156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Felis chaus affinis Gray, 1830)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 156 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088963-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wbx2qs
title: Occurrence Download

description: A dataset containing 214 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dalbergia congestiflora Pittier"
 ]
}

 The dataset includes 214 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088962-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57907/mirri/v43xp1
title: MIRRI0027860

description: Organism type: ; Taxon name: Candida torresii ; Collection: VKM Y-2613 ; Country: Sweden
DOI: 10.57907/mirri/vsppja/7wccow
title: MIRRI0027743.json

description: Strain json file
DOI: 10.57907/mirri/wfr7eu
title: MIRRI0027842

description: Organism type: ; Taxon name: Sugiyamaella castrensis ; Collection: VKM Y-2636 ; Country: Chile