cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7488/ds/2599
title: Cone calorimeter tests of combustible materials found in informal settlements

description: Data supporting Wang et al. "Cone calorimeter tests of combustible materials found in informal settlements" (In submission). See readme.txt for detail of contents of files.
DOI: 10.7488/ds/2888
title: Experimental and simulation study of the high-pressure behavior of squalane and poly-α-olefins

description: These files contain original simulation data for Figures 3, 5, 6, 7, 8, 9, 10, and 11. (Figures 1, 2, and 4 contain images.) They are all plain text files, each with two columns in xy format, or with four columns in xdxydy format. The filenames refer to subfigures and are appended with the same labels used in the legends.
description: The full file listing and figure captions are given in the accompanying README.txt file.
DOI: 10.7488/ds/2605
title: SUPERSEDED - Relating production and perception of L2 tone: supplementary materials

description: ## This item has been replaced by the one which can be found at https://doi.org/10.7488/ds/2635 ## This dataset contains supplementary materials to the paper "Relating the production and perception of L2 tone". It includes anonymised perception and production data (as CSV files) and R code to reproduce the figures and analyses described in the paper.
description: See README.txt
DOI: 10.7488/ds/2885
title: Fire experiment of informal settlement dwelling with window (Test 2)

description: This link presents Test 2 of Phase 1. The fuel condition is different from that in Phase 2.
DOI: 10.7488/ds/2396
title: Data for "Mixtures of blue phase liquid crystal with simple liquids: elastic emulsions and cubic fluid cylinders"

description: We numerically investigate the behavior of a phase-separating mixture of a blue phase I liquid crystal with an isotropic fluid. The resulting morphology is primarily controlled by an inverse capillary number, χ, setting the balance between interfacial and elastic forces. When χ and the concentration of the isotropic component are both low, the blue phase disclination lattice templates a cubic array of fluid cylinders. For larger χ, the isotropic phase arranges primarily into liquid emulsion droplets which coarsen very slowly, rewiring the blue phase disclination lines into an amorphous elastic network. Our blue phase-simple fluid composites can be externally manipulated: an electric field can trigger a morphological transition between cubic fluid cylinder phases with different topologies.
description: Please see included README
DOI: 10.7488/ds/2816
title: Multi-method genome and epigenome wide studies of inflammatory protein levels in healthy older adults - BayesR+ EWAS Proteins

description: This dataset represents one of five datasets which correspond to the study: "Multi-method genome and epigenome wide studies of inflammatory protein levels in healthy older adults". These datasets represent association studies on the levels of the same set of 70 inflammatory proteins. Each dataset represents one of five distinct methods used to perform genome-wide and epigenome-wide association studies on these protein levels. These methods are: Linear Regression GWAS, Linear Regression EWAS, OSCA EWAS, BayesR+ GWAS and BayesR+ EWAS. These analyses were performed as part of the Lothian Birth Cohort 1936 Study. This data relates to summary statistics for EWAS of 70 Olink inflammation proteins - performed by BayesR+.
DOI: 10.7488/ds/2318
title: Genome-wide pleiotropy and shared biological pathways for resistance to bovine pathogens

description: A README.txt file was uploaded with the data.
DOI: 10.7488/ds/2940
title: SUPERSEDED - Multi-country survey of heat-health during COVID-19

description: ## This item has been replaced by the one which can be found at https://doi.org/10.7488/ds/2961## Multi-country, remote survey to evaluate the interplay between COVID-19 mitigation measures, heat-health and livelihoods for populations living in densely populated urban areas. Survey data available for Pakistan, India, Indonesia and Cameroon. Data collected remotely via mobile phone survey with ~4400 randomly identified respondents. Data available in CSV file format. Data generated as part of the ESRC/GCRF project "Cool Infrastructures: Life with heat in the Off Grid City (ES/T008091/1), with additional funding from the Scottish Funding Council.
description: Data provided in 8 files (2 survey waves per country). Cool Infrastructures India Raw Data Wave 1.csv Cool Infrastructures India Raw Data Wave 2.csv Cool Infrastructures Pakistan Raw Data Wave 1.csv Cool Infrastructures Pakistan Raw Data Wave 2.csv Cool Infrastructures Indonesia Raw Data Wave 1.csv Cool Infrastructures Indonesia Raw Data Wave 2.csv Cool Infrastructures Cameroon Raw Data Wave 1.csv Cool Infrastructures Cameroon Raw Data Wave 2.csv
DOI: 10.7488/ds/2607
title: Dispersion data for "1D, 2D and 3D Monte Carlo ambient noise tomography using a dense passive seismic array installed on the North Sea seabed"

description: This dataset includes dispersion curves derived from ambient noise data recorded on Grane field, North Sea. The dispersion curves are picked using an image transformation technique from cross-correlations of noise data. The raw data (noise data) is continuous seismic noise waveforms (time series) recorded by geophones and may be obtained from Grane license partners Equinor ASA, Petoro AS, ExxonMobil E\&P Norway AS, and ConocoPhillips Skandinavia AS.
DOI: 10.7488/ds/2623
title: Edinburgh College of Art Artist Books

description: The ECA Library began actively collecting artists’ books in the 1980s. The earliest books in the collection date back to the 1960s, for example Ed Ruscha’s Twenty-Six Gasoline Stations, a now iconic paperback book. The collection is situated in the ECA Library at Evolution House, where there are also regular displays featuring the collection. The collection consists of c.1500 artists’ books. It is a working and handling collection, and is used regularly in group tutorials. Students and staff can also request individual artist’s books for reference in the Library. The collection is strong on Scottish artists such as Ian Hamilton Finlay, Helen Douglas, Jane Hyslop, Jenny Smith, Susie Wilson and Susie Leiper, but is also international in scope, including works by Hans Waanders, Maddy Rosenberg, and the works of Redfoxpress (featuring European contributors in the C’est mon dada series, and the works of Francis van Maele and Franticham). The collection also includes book-works by ECA students acquired from the annual ECA degree shows. The dataset is provided in JSON and XNL format. For more information please see www.ed.ac.uk/is/crc or email is-crc@ed.ac.uk
DOI: 10.7488/ds/2887
title: Action and Gesture in teacher demonstration: Visual attention and learning
title: Action and Gesture in Teacher Explanations: The Effects on Visual Attention and Implications for Learning

description: Data set originated for the study with the same name: This study contributes to the debate about the relative benefits of two pervasive resources used by teachers to support children’s learning: actions with manipulatives and gestures (represented actions). It does so by examining how these resources influence children’s visual attention and subsequent learning. Eighty-one children (4-6yrs) watched a video of a teacher explaining a numerical relationship in one of three conditions: using manipulatives (Action), using hands (Gesture) or no hand movements (Control). All children solved a related numerical problem and provided their own explanation both before and after the teacher’s explanation. As predicted, teacher’s actions attracted greater visual attention to their hands than gestures, and both more than control. Subsequent learning effects were not found, although may be attributable to task type and duration. Notwithstanding, the study demonstrates the methodological value for revealing embodied learning mechanisms, and potential to inform the pedagogical use of gesture and action in teaching. The database includes all the variables collected as well as the Rscripts used to analyse and report the data from the article
DOI: 10.7488/ds/2140
title: Morphologically Constrained and Data Informed Cell Segmentation of Budding Yeast

description: This is all the data associated with the paper "Morphologically Constrained and Data Informed Cell Segmentation of Budding Yeast": a description of the cell segmentation software developed in the Swain Laboratory for segmenting microscopy images of yeast (Saccharomyces cerevisiae) cells in the ALCATRAS microfluidic device. Included are the raw images, ground truth segmentation and the automated segmentations of all the software tested. The format is the data structure used with the published software (available at https://github.com/pswain/segmentation-software). The data set includes images both from our own lab (https://academic.oup.com/bioinformatics/article-abstract/doi/10.1093/bioinformatics/btx550/4103414/Morphologically-Constrained-and-Data-Informed-Cell) and from that of Professor Nan Hao (in Press at PNAS, 10.1073/pnas.1703379114). Please cite both.
description: Data set contains a single zip file of all the data. The data is divided into all files relevant to each test data set. There is a folder of raw images and a folder of data structures: 1 for each software tested and the ground truth. The naming should be self explanatory. For help accessing the datafiles see the software documentation at: https://github.com/pswain/segmentation-software Also included are the segmentation/morphology model used in our analysis and .avi movies of representative segmentation results for each data set.
DOI: 10.7488/ds/2217
title: WEST ORKNEY MIKE 21 MODEL INPUT FILES

description: This submission includes the input files for the West Orkney spectral wave sub-model that is described in [1]. It formed part of the TeraWatt and EcoWatt2050 EPSRC projects (grant numbers EP/J010170/1 & EP/K012851/1 respectively). The input files require the MIKE 21 modelling suite to run, available commercially from https://www.mikepoweredbydhi.com/; they were created and validated using the 2014 edition. Input files are being stored instead of outputs as per RCUK guidelines due to the size of the output files. Versions of the simulation were run for present (2010) and future (2050) climate, and with and without wave energy extraction by wave energy convertors (WECs). All four resulting scenarios are included here. For further information please contact Dr. Vengatesan Venugopal, School of Engineering, University of Edinburgh (v.venugopal@ed.ac.uk).
description: See readme.txt.
DOI: 10.7488/ds/2618
title: Variant discovery from whole genome sequence data from a commercial broiler line and a CSFIR- mApple reporter transgenic layer line

description: The data comprises variants calls from whole genome sequencing (WGS) data from a set of founder broilers (n=10) and transgenic layers (n=10). The broiler samples belong to commercial Ross 308 founder population and were sourced from PD Hook (Hatcheries) Ltd, Cote, Brampton, Oxfordshire, UK. The layer samples belong to founder population from a CSF1R-mApple reporter transgenic layer line on an ISA-Brown genetic background and were produced in The Roslin Institute. WGS was performed on Illumina HiSeqX platform in paired-end mode with read length of 150bp. After quality checking (using FASTQC v0.11.8) and trimming of poor quality data (using Trimmomatic software v3.5 and with trimming criteria: LEADING:20, SLIDINGWINDOW:10:20, MINLEN:50), sequence reads were mapped against chicken reference genome (Galgal5.0) using BWA_MEM algorithm (v0.7.8). Before proceeding to variant calling, the mapped reads in BAM files were further processed for marking duplicates (using Picard tools v2.1.1) and indel realignment (using GATK v 3.7.0). Variant calling was performed using samtools mpileup (v 1.1) in conjunction with bcftools with minimum base and mapping qualities set to 20. The variant data is present in the Variant Calling Format (VCF). ## Broiler samples: ## sample1662 (Male (M)), sample1674 (Female (F)), sample1678 (F), sample1679 (F), sample1684 (F), sample1686 (F), sample1687 (M), sample1696 (M), sample1697 (M), sample1698 (M). ## Transgenic layer samples: ## sample14 (F), sample16 (F), sample18 (M), sample24 (F), sample26 (M), sample29 (F), sample4937 (M), sample4946 (M), sample4 (F), sample6 (M).
description: File names and description: (1) broiler_transgenicLayer_variantCall.vcf.gz : Variant call data in VCF format from 20 chicken samples: 10 broilers and 10 transgenic layers (2) broiler_transgenicLayer_variantCall.vcf.gz.tbi : Index file of the VCF file above
DOI: 10.7488/ds/2365
title: Supplementary files for study on modeling DSB with random forests
title: Modelling double strand break susceptibility to interrogate structural variation in cancer

description: Structural variants (SVs) are known to play important roles in a variety of cancers, but their origins and functional consequences are still poorly understood. The nonrandom distributions of these variants across tumour genomes are often assumed to reflect selective processes, but, as with single nucleotide variants, SV mutation rates often reflect the underlying chromatin and other features at a locus. Inferring which SVs may be under selection in tumourigenesis therefore remains challenging, though identifying such variants may lead to new diagnostic and therapeutic targets. Many SVs are thought to emerge via errors in the repair processes following DNA double strand breaks (DSBs) and a variety of studies have experimentally measured DSB frequencies across the genome in cell lines. Using these data we derive the first quantitative genome-wide models of DSB susceptibility, based upon underlying chromatin and sequence features. These models provide high predictive accuracy and novel insights into the mutational mechanisms generating DSBs. Models trained in one cell type can be successfully applied to others, but a substantial proportion of DSBs appear to reflect cell type specific processes. We also show that regions harboring unusually high tumour SV breakpoint frequencies occur within well modeled regions of the genome but often display DSB frequencies inconsistent with DSB model predictions. Using model predictions as a proxy for susceptibility to DSBs in tumours, many SV hotspots appear to be poorly explained by selectively neutral mutational bias alone. A substantial number of hotspots show unexpectedly high SV breakpoint frequencies given their predicted susceptibility to mutation, and are therefore credible targets of positive selection in tumours. These putatively positively selected hotspots are enriched for genes previously shown to be oncogenic. In contrast, several hundred regions across the genome show unexpectedly low levels of SVs, given their relatively high susceptibility to mutation. These novel ‘coldspot’ regions appear to be subject to purifying selection in tumours and are enriched for active promoters and enhancers. We conclude that models of DSB susceptibility offer a rigorous approach to the inference of SVs putatively subject to selection in tumours.
DOI: 10.7488/ds/2407
title: Liquid crystal lasers: overcoming repetition rate limitations

description: Liquid crystal lasers have advantageous features including continuous wavelength tuning at low cost. Although many potential applications have been highlighted, use of these lasers is not widespread, partially due to performance limitations. This paper presents a method of overcoming repetition rate limitations. A rapidly spinning stage is used to allow operation of a LC laser at 10 kHz: two orders of magnitude greater than possible with a static cell. Average power outputs of up to 3.5 mW are achieved along with an improvement in emission stability. Lastly, a mechanical wavelength-switching method is demonstrated. The spinning cell approach will enable research into the use of liquid crystal lasers in fluorescence imaging and display applications.
DOI: 10.7488/ds/2043
title: Distributing tasks via multiple input pathways increases cellular survival in stress

description: Data from single-cell microscopy experiments for "Distributing tasks via multiple input pathways increases cellular survival in stress" by Granados, Crane, Montano-Gutierrez, Tanaka, Voliotis, & Swain. Improving in one aspect of a task can undermine performance in another, but how such opposing demands play out in single cells and impact on fitness is mostly unknown. Here we study budding yeast in dynamic environments of hyperosmotic stress and show how the corresponding signalling network increases cellular survival both by assigning the requirements of high response speed and high response accuracy to two separate input pathways and by having these pathways interact to converge on Hog1, a p38 MAP kinase. Cells with only the less accurate, reflex-like pathway are fitter in sudden stress, whereas cells with only the slow, more accurate pathway are fitter in fluctuating but increasing stress. Our results demonstrate that cellular signalling is vulnerable to trade-offs in performance, but that these trade-offs can be mitigated by assigning the opposing tasks to different signalling subnetworks. Such division of labour could function broadly within cellular signal transduction.
description: Text files of single-cell data in six ramps and six steps of osmotic stress for wild-type and STE11 and SSK1 deletion mutants of budding yeast. See README.txt.
DOI: 10.7488/ds/2464
title: Simulated continuous blood biomarker profiles with associated non-invasive measurement profiles and result of neural network reconstruction

description: Data provided in accordance with open data policy for publication (currently under review), 'Reconstructing Blood Biomarker Profile from Sweat, Tears and Other Non-Invasive Media: a Neural Network Approach', Submitted to MDPI Biosensors Oct 18th 2018. This data constitutes simulated concentration vs time data represented in the associated article in graph format. Data is in text format, directly readable in GNU Octave version 4.2.1, or in any text reader (e.g. notepad).
DOI: 10.7488/ds/2842
title: Experimental flow data from co-located Single beam Acoustic Doppler Profiler and Acoustic Doppler Velocimeter in the FloWave Ocean Energy Research Facility
title: Experimental Single beam Acoustic Doppler Profiler and Acoustic Doppler Velocimeter co-located velocity data measured in the FloWave

description: Acoustic Doppler Profilers (ADPs) are routinely used to measure flow velocity in the ocean, enabling multi-points measurement along a profile while Acoustic Doppler Velocimeters (ADVs) are laboratory instruments that provide very precise point velocity measurement. The experimental set-up allows laboratory comparison of measurement from those two instruments. Simultaneous multi-point measurements of velocity along the horizontal tank profile from Single-Beam Acoustic Doppler Profiler (SB-ADP) were compared against multiple co-located point measurements from an ADV. The data-set of this first time comparison has been made available. Measurements were performed in the FloWave Ocean Energy Research Facility at the University of Edinburgh at flow velocities between 0.6~m/s and 1.2~m/s. This data-set contains a) time series of raw SB-ADP uni-directional velocity measurements along a 10~m tank profile binned into 54 measurements cells and b) ADV point measurements of three-directional velocity time series recorded in beam coordinates at selected locations along the profile. Associated with the velocity data are instrument generated quality data, metadata and user-derived quality flags. This data-set provides multiple contemporaneous velocity measurements along the tank profile, relevant for correlation statistics, length-scale calculations and validation of numerical models simulating flow hydrodynamics in circular test facilities.
DOI: 10.7488/ds/2569
title: Dogslife height and weight data - the first 7 years of the cohort

description: Dogslife is a longitudinal, online study of the health of pedigree UK Kennel Club registered Labrador Retrievers in the UK. Recruitment to Dogslife began in 2010 and continues into 2019. After registration, owners are prompted to complete regular online questionnaires on the Dogslife website about their dog’s morphology, lifestyle and illness incidences. Data for this study were collected during the first 7 years of Dogslife from July 2010 to June 2017, via routine online reporting. The study was approved by the University of Edinburgh Veterinary Ethical Review Committee (Ref: 7.5.09) and Human Ethical Review Committee (Ref: HERC_161_17). The cohort profile is described elsewhere [1]. Dog owners were asked to measure their dogs’ weight every time they filled out the questionnaire; monthly for the first 12 months of the dog’s life and every 3 months thereafter. They were given the option to enter the weight of their dog in either kg or lbs in a free text box with a drop-down menu at the side indicating which unit they had chosen. The default unit was kg and owners were not required to answer the question to continue with the questionnaire. If they entered the weight in lbs, it was multiplied by 0.45 and stored in the database as kg. Dog owners were asked to measure their dog’s height to their shoulder every month up to the age of 18 months old and then at 3 years of age. Clear written and pictorial instructions of how to measure the dogs height and weight were given on the website. Owners were given the option to enter the height of their dog in integers of either cm or inches from a drop-down menu and were not allowed to pass the question unless they entered a value. If they entered the height in inches, it was multiplied by 2.54 and stored in the database as cm. [1]. Clements DN, Handel IG, Rose E, Querry D, Pugh CA, Ollier WER, et al. Dogslife: a web-based longitudinal study of Labrador Retriever health in the UK. BMC veterinary research. 2013;9(13):1–15. DOI: 10.1186/1746-6148-9-13
description: Refer to Readme.txt file.
DOI: 10.7488/ds/2621
title: University of Edinburgh Art Collection

description: The University of Edinburgh Art Collection supports the world-leading research and teaching that happens within the institution. Comprised of an astonishing range of objects and ideas spanning two millennia and a multitude of artistic forms, the collection reflects not only the long and rich trajectory of the University, but also major national and international shifts in art history. The collection has particular strengths in Portraiture (specifically images of notable alumni and teaching staff), 17th Century Dutch and Italian works, as well as rich holdings of Modern Scottish art. The University remains active in acquiring and commissioning art for campus, and is developing contemporary holdings rooted in the theme of globalisation, with a specific focus on women's experience and the contribution of feminist thought. For more information please see www.ed.ac.uk/is/crc or email is-crc@ed.ac.uk.
DOI: 10.7488/ds/2606
title: Centre for Research Collections Reading Room Data August 2017 to July 2019

description: The Dataset contains details of all items consulted in the Reading Room of the Centre for Research Collections, Main Library, University of Edinburgh during the 2017/18 and 2018/19 academic years. The data records the reader name (anonymised identifiers are used), category of material, unique reference, description, format of items, and whether they were re-used by the reader shortly afterwards. The data is accompanied by a readme.txt file that contains further contextualisation of the data. For more information please see www.ed.ac.uk/is/crc or email is-crc@ed.ac.uk
description: Please see the accompanying Readme.txt and metadata files.
DOI: 10.7488/ds/2615
title: Dataset for 'Novel Rotational Effects of Granular Intruders in Dense Granular Systems'

description: This dataset is in support of the PhD Thesis titled 'Novel Rotational Effects of Granular Intruders in Dense Granular Systems'.
description: Refer to README.md file