cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30042765
title: A naturally occurring NS1 variant with effector domain deletion gains growth advantages in influenza virus infection

description: High pathogenicity avian influenza virus (HPAIV) poses major threats to both poultry health and public safety. The viral nonstructural protein 1 (NS1) plays a crucial role in counteracting innate immunity. NS1 typically consists of approximately 230 amino acids with two domains: an RNA-binding domain (RBD) and the effector domain (ED). A novel naturally occurring NS1 variant, termed NS100, was reported herein, isolated during propagation of a recombinant H5N2 virus. NS100 encodes only the 1–95 residues of NS1, lacking the entire ED. Surprisingly, the NS100 virus replicated as efficiently as the wild-type (WT) virus in both cell and animal models. Cells infected with NS100 exhibited reduced interferon and cytokine expression, indicating preserved immune evasion capacity. Biochemical analyses revealed that NS100 retains key NS1 functions mediated by the RBD, including dsRNA binding, PKR interaction, and homodimer formation. In addition, NS100 cooperated with the viral RNA polymerase complex in a mini-genome assay, indicating functional synergy. Interestingly, the NS100 virus showed markedly reduced NS2 protein expression, likely due to impaired splicing caused by a GA transversion at a polypyrimidine tract. Transcriptome analysis further confirmed reduced splicing efficiency of NS transcripts and lower expression of antiviral host genes in NS100-infected cells. In conclusion, our findings demonstrate that NS1 can maintain essential pro-viral functions despite the loss of its ED, and that NS100 provides new insights into the modularity of NS1 and its broader role in regulating host-virus interactions.
DOI: 10.6084/m9.figshare.30042765.v2
title: A naturally occurring NS1 variant with effector domain deletion gains growth advantages in influenza virus infection

description: High pathogenicity avian influenza virus (HPAIV) poses major threats to both poultry health and public safety. The viral nonstructural protein 1 (NS1) plays a crucial role in counteracting innate immunity. NS1 typically consists of approximately 230 amino acids with two domains: an RNA-binding domain (RBD) and the effector domain (ED). A novel naturally occurring NS1 variant, termed NS100, was reported herein, isolated during propagation of a recombinant H5N2 virus. NS100 encodes only the 1–95 residues of NS1, lacking the entire ED. Surprisingly, the NS100 virus replicated as efficiently as the wild-type (WT) virus in both cell and animal models. Cells infected with NS100 exhibited reduced interferon and cytokine expression, indicating preserved immune evasion capacity. Biochemical analyses revealed that NS100 retains key NS1 functions mediated by the RBD, including dsRNA binding, PKR interaction, and homodimer formation. In addition, NS100 cooperated with the viral RNA polymerase complex in a mini-genome assay, indicating functional synergy. Interestingly, the NS100 virus showed markedly reduced NS2 protein expression, likely due to impaired splicing caused by a GA transversion at a polypyrimidine tract. Transcriptome analysis further confirmed reduced splicing efficiency of NS transcripts and lower expression of antiviral host genes in NS100-infected cells. In conclusion, our findings demonstrate that NS1 can maintain essential pro-viral functions despite the loss of its ED, and that NS100 provides new insights into the modularity of NS1 and its broader role in regulating host-virus interactions.
DOI: 10.6084/m9.figshare.30042765.v1
title: A Naturally Occurring NS1 Variant with Effector Domain Deletion Gains Growth Advantages in Influenza Virus Infection

description: High pathogenicity avian influenza virus (HPAIV) poses major threats to both poultry health and public safety. The viral nonstructural protein 1 (NS1) plays a crucial role in counteracting innate immunity. NS1 typically consists of approximately 230 amino acids with two domains: an RNA-binding domain (RBD) and the effector domain (ED). A novel naturally occurring NS1 variant, termed NS100, was reported herein, isolated during propagation of a recombinant H5N2 virus. NS100 encodes only the 1-95 residues of NS1, lacking the entire ED. Surprisingly, the NS100 virus replicated as efficiently as the wild-type (WT) virus in both cell and animal models. Cells infected with NS100 exhibited reduced interferon and cytokine expression, indicating preserved immune evasion capacity. Biochemical analyses revealed that NS100 retains key NS1 functions mediated by the RBD, including dsRNA binding, PKR interaction, and homodimer formation. In addition, NS100 cooperated with the viral RNA polymerase complex in a mini-genome assay, indicating functional synergy. Interestingly, the NS100 virus showed markedly reduced NS2 protein expression, likely due to impaired splicing caused by a GA transversion at a polypyrimidine tract. Transcriptome analysis further confirmed reduced splicing efficiency of NS transcripts and lower expression of antiviral host genes in NS100-infected cells. In conclusion, our findings demonstrate that NS1 can maintain essential pro-viral functions despite the loss of its ED, and that NS100 provides new insights into the modularity of NS1 and its broader role in regulating host-virus interactions.
DOI: 10.15468/dl.m646gq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Cypripedium bardolphianum zhongdianense)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029203-250920141307145/datasets/export for details.
DOI: 10.15468/dl.hde9ts
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nitzschia acicularis",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 65 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029206-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n9hedb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zosterops mbuluensis",
 "Country is one of (Brunei Darussalam, Indonesia, Philippines, Timor-Leste, Singapore)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029205-250920141307145/datasets/export for details.
DOI: 10.15468/dl.gj8kne
title: Occurrence Download

description: A dataset containing 703 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Digitalis grandiflora",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 703 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029207-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.28hsjh
title: Occurrence Download

description: A dataset containing 835876 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Melanitta nigra)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 835876 records from 408 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029152-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17217964
title: Global Monthly Vegetation Clumping Index (CI) Dataset (2000–2020) at 0.05° Resolution
title: 2000–2020年全球植被聚集指数(CI)月度产品(0.05°空间分辨率)

description:  

Global Monthly Vegetation Clumping Index (CI) Dataset (2000–2020) at 0.05° Resolution

 

1.    Data Information



Spatial resolution: 0.05° (~5.5 km)

Temporal resolution: monthly

Temporal Coverage: March 2000 – December 2020

Spatial Extent: Global (60°S–90°N, 180°W–180°E)

Format: GeoTIFF


2.    Data Generation Methodology 

Input Datasets:



MODIS MCD43A1 (BRDF parameters)

MODIS MCD43A2 (quality flags)

GLC2000 (land cover classification)


 

Key Processing Steps:

(1)     Calculate NDHD (Normalized Difference between Hotspot and Darkspot reflectance)

(2)     Invert CI using the linear relationship: CI = A(θₛ) × NDHD + B(θₛ), where θₛ is the solar zenith angle (SZA), A(θₛ) and B(θₛ) are coefficients jointly determined by solar zenith and the shape of the vegetation canopy.

(3)     Apply Savitzky-Golay filtering to smooth temporal noise

(4)     Monthly mean data based on pixel screening with quality assurance.

 

Valid Range: CI ∈ [0.3, 1.0]



 CI < 1: Indicates clustered leaf distribution (non-random)

 CI = 1: Indicates random leaf distribution


 

3.    Data Organization

Folder Structure Overview








Level



Type



Example Name



Description







1



Folder



2001



Organized by year





2



File



Full_Extend_Global_MODIS_Clumping_Index_A200101_pro_0.05D_flo_monthly.tif



Naming convention explained below






 

Filename Format:

Full_Extend_Global_MODIS_Clumping_Index_A[YYYYMM]_pro_0.05D_flo_monthly.tif

YYYYMM:Year and month (e.g., 200101 represents January 2001)

4.    Point of Contact

Prof. Hongliang Fang

LREIS, Institute of Geographic Sciences and Natural Resources Research

Chinese Academy of Sciences (CAS) 

11A Datun Road,

Beijing, 100101, China

Email: fanghl@lreis.ac.cn

5.    Relate to

Wei, S., Fang, H., Schaaf, C. B., He, L., and J. M. Chen, 2019. Global 500 m clumping index product derived from MODIS BRDF data (2001-2017). Remote Sensing of Environment. 232, 111296. https://doi.org/10.1016/j.rse.2019.111296. [Global product]

Wei, S., and H. Fang, 2016. Estimation of canopy clumping index from MISR and MODIS sensors using the normalized difference hotspot and darkspot (NDHD) method: The influence of BRDF models and solar zenith angle. Remote Sensing of Environment. 187: 476-491. https://www.doi.org/10.1016/j.rse.2016.10.039. [Core Methodology]

Li, Y. and Fang, H., 2022. Real-time software for the efficient generation of the clumping index and its application based on the Google Earth Engine. Remote Sensing, 14(15), 3837. https://doi.org/10.3390/rs14153837. [GEE Implementation]

Fang, H., Li, S., Zhang, Y., Wei, S., and Wang Y., 2021. New insights of global vegetation structural properties through an analysis of canopy clumping index, fractional vegetation cover, and leaf area index. Science of Remote Sensing, 4, 100027. https://doi.org/10.1016/j.srs.2021.100027.[Data application]
DOI: 10.15468/dl.jbv5up
title: Occurrence Download

description: A dataset containing 1142 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Decaisnea fargesii)"
 ]
}

 The dataset includes 1142 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029208-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dg7shn
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nitzschia acuminata",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029209-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17224800
title: Data submission for Mycologia Journal - Microhabitat lignicolous marine fungi driftwood

description: Data submission for Mycologia Journal - Microhabitat lignicolous marine fungi driftwood
DOI: 10.5281/zenodo.17224801
title: Data submission for Mycologia Journal - Microhabitat lignicolous marine fungi driftwood

description: Data submission for Mycologia Journal - Microhabitat lignicolous marine fungi driftwood
DOI: 10.15468/dl.y9wryr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zosterops erythropleurus",
 "Country is one of (Brunei Darussalam, Indonesia, Philippines, Timor-Leste, Singapore)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029210-250920141307145/datasets/export for details.
DOI: 10.15468/dl.d9w3z2
title: Occurrence Download

description: A dataset containing 3629 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Melanoides tuberculata)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 3629 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029211-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/ay91o6
title: Romeinse brugresten, Maastricht. Inventariserend veldonderzoek (opwaterfase)
title: Periplus Archeomare rapport 18A003-02

description: In opdracht van de gemeente Maastricht heeft Periplus Archeomare B.V. in samenwerking met DEEP B.V. een veldonderzoek met hoge resolutie multibeam echosounder uitgevoerd om de staat van de Romeinse brugresten op de bodem van de Maast te beoordelen.&lt;br&gt;
De opnamen hebben geresulteerd in een dieptemodel waarin details groter dan 5cm gevisualiseerd kunnen worden. Eerdere vondsten die gedaan zijn in het gebied, zoals bewerkte natuurstenen en houten delen zijn goed zichtbaar. De nieuwe beelden kunnen dan ook gebruikt worden om de bestaande tekeningen van de resten te verfijnen en uit te breiden.&lt;br&gt;
Buiten het vondstengebied van de brugresten zijn verschillende objecten gevonden, waaronder enkele scheepswrakjes.&lt;br&gt;
De opnamen uit 2018 laten zien dat, dat op enkele plaatsen aan de westzijde van het onderzoeksgebied (en in het zuiden van het vondstgebied) de bodem verdiept is ten opzichte van 2016. Vermoedelijk gaat dit om recente bodemverstoringen.
Vergelijkingen met eerdere opnamen tonen aan dat de veranderingen in de periode 2004-2018 minimaal zijn. Verzanding of verdieping op grote schaal is niet waargenomen. De resolutie van de opnamen van Rijkswaterstaat (1x1m) is echter niet hoog genoeg om veranderingen op detailniveau waar te nemen.&lt;br&gt;
Geadviseerd wordt, om de hoge resolutiescan in detail te analyseren teneinde:
a. De bestaande tekeningen van de brugresten aan te vullen en te verfijnen;
b. De overige objecten (zoals de scheepswrakjes) te beschrijven&lt;br&gt;
Om eventuele veranderingen op detailniveau (mogelijke erosie/slijtage) van de brugresten te monitoren zou over een paar jaar een nieuwe vergelijkbare hoge resolutie multibeam opname uitgevoerd kunnen worden.
DOI: 10.15468/dl.ev82nc
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Digitalis lutea",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029212-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f6nt4r
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Digitalis lutea",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029213-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hv7ems
title: Occurrence Download

description: A dataset containing 251 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Digitalis lutea",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 251 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029215-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jnfsh7
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nitzschia amphibia",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 126 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029217-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbq36d
title: Occurrence Download

description: A dataset containing 2433 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Deutzia pulchra)"
 ]
}

 The dataset includes 2433 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029216-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4hqb59
title: Occurrence Download

description: A dataset containing 10730 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zosterops simplex",
 "Country is one of (Brunei Darussalam, Indonesia, Philippines, Timor-Leste, Singapore)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10730 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029220-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fabvqu
title: Occurrence Download

description: A dataset containing 290303 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "TaxonKey is Vespa velutina",
 "Year 2010-2025"
 ]
}

 The dataset includes 290303 records from 817 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029162-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3y7zaq
title: Occurrence Download

description: A dataset containing 475 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "Issue is Geodetic datum assumed WGS84",
 "TaxonKey is Malpighia mexicana A.Juss."
 ]
}

 The dataset includes 475 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071812-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ptn2z
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Ajania przewalskii Poljakov"
 ]
}

 The dataset includes 33 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009899-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ukgbhw
title: Occurrence Download

description: A dataset containing 2091 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is false",
 "TaxonKey is Asclepias syriaca L."
 ]
}

 The dataset includes 2091 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008658-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ohgvez
title: Occurrence Download

description: A dataset containing 174 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Chile",
 "Country is Argentina"
 ]
 },
 "TaxonKey is Nothofagus alpina (Poepp. & Endl.) Oerst."
 ]
}

 The dataset includes 174 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008260-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w2vpt6
title: Occurrence Download

description: A dataset containing 692 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Conopophaga cearae Cory, 1916",
 "Year 1000-2020"
 ]
}

 The dataset includes 692 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009919-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u3z9a4
title: Occurrence Download

description: A dataset containing 388 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Sedum altissimum Poir.",
 "TaxonKey is Sedum ×nicaeense All."
 ]
}

 The dataset includes 388 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008658-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ytv5zf
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pristimantis dorsopictus (Rivero & Serna, 1988)"
 ]
}

 The dataset includes 78 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008260-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.