cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23642847
title: Social attention across development in common ravens and carrion crows

description: Underlying social learning and other important aspects of successful adaptation to social life, is social awareness, where individuals are required to pay attention and respond flexibly to others in their environment. We tested the influence of social context (alone, affiliate, non-affiliate, heterospecific) on behavioural interactions (manipulation, caching, head & body out of sight i.e. barrier use) with food and objects during development at fledging (1-2 months), juvenile (3-8 months) and sub-adult (14-18 months old) in 10 carrion crows (<em>Corvus corone; C. cornix</em>) and nine common ravens (<em>C. corax</em>). These species are closely related, generalist corvids and subjects were all hand-reared and housed in highly comparable conditions. Both species will routinely cache, i.e. hide food and other items for later recovery, and engage in cache-pilfering (stealing) strategies. They will interact and ‘play’ with objects, potentially as part of developing social bonding and/or physical cognition. We found that corvid behaviour was influenced by social context, with birds showing higher frequency of ‘head & body out of sight’ behaviour while others were observing than when alone, suggesting they have an awareness of other’s presence and respond by using barriers when interacting with items. There were no differences based on observer identity, supporting an interpretation of item interaction and play potentially driving development of physical rather than social skills in this setting. There were developmental effects, including increased manipulation and use of barriers as juveniles as well as increased caching with age. Ravens generally cached more than crows. Objects were manipulated more frequently than food, while barriers were used more with food, indicating that food was more likely to be actively hidden while objects may promote open play. We discuss our findings in relation to other social and developmental influences on behaviour and the wider ramifications for identifying the drivers of play in animals.
DOI: 10.6084/m9.figshare.19448632
title: Train timetabling and destination selection in mining freight rail networks: A hybrid simulation methodology incorporating heuristics

description: We present a hybrid simulation methodology designed to support freight rail operations in the mining industry. We aim to bridge the gap between hybrid simulation modelling research and practice. Through discussion of a case study, we contribute to the hybrid simulation methodological literature, explaining why at a conceptual level the hybrid model design and adopted modelling frame are well suited to the problem at hand. The methodology we present can be used in mining freight rail operations planning to determine train destinations across a network and generate a feasible timetable that satisfies operational needs. The method combines discrete-event simulation and agent-based modelling with heuristics to govern train movements destination selection, incorporating an ensemble of simulation runs. We demonstrate the capability of our method to produce a train timetable that satisfies the requirements of the mining operation. Choosing optimal destinations from many options for a large fleet of trains in a vast network is a significant computational challenge (NP-hard in the general case). The method presented significantly reduces the parameter space for which full enumeration of all options would not be computationally tractable.
DOI: 10.6084/m9.figshare.25102307.v1
title: Supplementary Material for: A Prospective, Single-arm, Phase 2 Study of Modified Transarterial Chemoembolization (TACE) using Low-dose Chemotherapy with Blank Microspheres Plus Low-dose Lenvatinib and Microwave Ablation in Patients with Large (≥ 7 cm) Unresectable Hepatocellular Carcinoma: The TALEM Trial

description: Background: For patients with large unresectable hepatocellular carcinoma (HCC), the effectiveness of conventional transarterial chemoembolization (cTACE) remains suboptimal. This study investigated the efficacy and safety of modified TACE using low-dose chemotherapy with blank microspheres (BMS-TACE) plus low-dose lenvatinib (LD-LEN) and microwave ablation (MWA) in patients with large unresectable HCC. 
Methods: In this prospective, single-arm, phase 2 study, patients with unresectable HCC exceeding the up-to-seven criteria, with maximum tumor diameter ≥ 7 cm, and without macrovascular invasion or extrahepatic metastases, received initial BMS-TACE (lipiodol, low-dose doxorubicin and lobaplatin up to 30 mg each, and blank microspheres; subsequently modified and repeated in most patients) plus LD-LEN (4-8 mg/day) and MWA. The primary endpoint was downstaging rate (DSR); secondary endpoints were objective response rate (ORR), progression-free survival (PFS), overall survival (OS), and adverse events. 
Results: From November 2019 to March 2022, 43 patients were enrolled. Median follow-up was 21.2 months. Median largest tumor diameter was 11.2 cm (interquartile range [IQR], 7-25). Following BMS-TACE and LD-LEN, downstaging occured in 37 (86.0%) patients, 32 of whom received MWA, and 8 of whom had a complete response (CR) without MWA. ORR was 93.0% (CR in 32 [74.4%] and partial response in 8 [18.6%] patients). The 1-, 2- and 3-year PFS rates were 57.5%, 25.9%, and 18.1%, respectively (median PFS, 14.7 months [95% CI, 8.1-19.5]). The 1-, 2-, and 3-year OS rates were 85.8%, 67.7% and 61.6%, respectively (median OS, 36.4 months [95% CI, 26.8-not reached]). After BMS-TACE, a significant decline in CD11b+/CD33+/HLA-DR- myeloid-derived suppressor cells and early elevation in CXCR5+/CD8+ and CXCR5+/CD4+ T cells were observed (both p&lt;0.05).
Conclusions: BMS-TACE plus LD-LEN and MWA resulted in promising efficacy and tolerable toxicity in patients with large unresectable HCC exceeding the up-to-seven criteria with a maximum tumor diameter ≥ 7 cm and without macrovascular invasion or extrahepatic metastases.
DOI: 10.34740/kaggle/dsv/7505330
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.5281/zenodo.10576910
title: YUTO MMS Dataset, Sequence B, Images, Part2
DOI: 10.5281/zenodo.10576911
title: YUTO MMS Dataset, Sequence B, Images, Part2
DOI: 10.34740/kaggle/ds/4370592
title: PONTOS: Ship operational data
DOI: 10.18454/psy.2024.2.3.1
title: Средние показатели диагностики типов акцентуации личности

description: Cifra. Психология, Выпуск 1 (2) 2024
DOI: 10.18454/psy.2024.2.5.1
title: Балльные шкалы уровней особенностей учебно-профессиональных стресс-состояний студентов на первом этапе профессиональной подготовки

description: Cifra. Психология, Выпуск 1 (2) 2024
DOI: 10.18454/psy.2024.2.3.2
title: Средние значения результатов диагностики склонности к циклотимии

description: Cifra. Психология, Выпуск 1 (2) 2024
DOI: 10.18454/psy.2024.2.5.2
title: Выраженность уровней особенностей учебно-профессиональных стресс-состояний студентов на первом этапе профессиональной подготовки

description: Cifra. Психология, Выпуск 1 (2) 2024
DOI: 10.18454/psy.2024.2.3.3
title: Средние значения результатов диагностики склонности к риску

description: Cifra. Психология, Выпуск 1 (2) 2024
DOI: 10.18454/psy.2024.2.5.3
title: Взаимосвязь особенностями учебно-профессиональных стресс-состояний студентов на первом этапе профессиональной подготовки

description: Cifra. Психология, Выпуск 1 (2) 2024
DOI: 10.18454/psy.2024.2.4.6
title: Критерий U-Манна-Уитни

description: Cifra. Психология, Выпуск 1 (2) 2024
DOI: 10.18454/psy.2024.2.4.12
title: Результаты сравнительного анализа двух групп на контрольном этапе эксперимента по критерию U-Манна-Уитни

description: Cifra. Психология, Выпуск 1 (2) 2024
DOI: 10.18454/psy.2024.2.4.13
title: Результаты сопоставления показателей до и после экспериментальной работы в контрольной группе по критерию W-Вилкоксона

description: Cifra. Психология, Выпуск 1 (2) 2024
DOI: 10.18454/psy.2024.2.4.14
title: Результаты сопоставления показателей до и после экспериментальной работы в экспериментальной группе по критерию W-Вилкоксона

description: Cifra. Психология, Выпуск 1 (2) 2024
DOI: 10.5281/zenodo.10579686
title: Impact of spatial transformations on landscape features of CEC 2022 basic benchmark problems
DOI: 10.5281/zenodo.10579687
title: Impact of spatial transformations on landscape features of CEC 2022 basic benchmark problems
DOI: 10.6084/m9.figshare.25102367
title: Quantitative Comparison of Target Volumes and Dosimetry

description: Quantitative Comparison of Target Volumes and Dosimetry. See: https://www.sciencedirect.com/science/article/pii/S240563162400006X
DOI: 10.6084/m9.figshare.25102367.v1
title: Quantitative Comparison of Target Volumes and Dosimetry

description: Quantitative Comparison of Target Volumes and Dosimetry. See: https://www.sciencedirect.com/science/article/pii/S240563162400006X
DOI: 10.6084/m9.figshare.20348712
title: Single-Cell transcriptomic data of 5716 FAP- CD29+ CAP (CAF-S4) from human breast cancer

description: Required citation: 
<br>
Seurat R object of 5716 CAP (CAF-S4) cells from 3 breast cancer patients
<br>
<strong>Comprehensive landscape of stromal heterogeneity and plasticity in breast cancer</strong>
<br>
read Seurat object:
---------------------------
CAP &lt;-readRDS("CAP_3patients_integrated_Final_Annotation.rds")
# Annotation
CAP@meta.data
# Plot umap
DimPlot(CAP, group.by = "final.annotation")
<br>
DOI: 10.6084/m9.figshare.25102391.v1
title: Supplementary Material for: Pain/Stress, Mitochondrial Dysfunction and Neurodevelopment in Preterm Infants

description: Introduction Preterm infants experience tremendous early life pain/stress during their neonatal intensive care unit (NICU) hospitalization, which impacts their neurodevelopmental outcomes. Mitochondrial function/dysfunction may interface between perinatal stress events and neurodevelopment. Nevertheless, the specific proteins or pathways linking mitochondrial functions to pain-induced neurodevelopmental outcomes in infants are remain unidentified. Our study aims to investigate the associations among pain/stress, proteins associated with mitochondrial function/dysfunction, and neurobehavioral responses in preterm infants. 
Methods We conducted a prospective cohort study, enrolling 33 preterm infants between September 2017 and July 2022 at two affiliated NICUs located in Hartford and Farmington, CT. NICU Network Neurobehavioral Scale (NNNS) datasets were evaluated to explore potential association with neurobehavioral outcomes. The daily pain/stress experienced by infant’s during their NICU stay was documented. At 36-38 weeks post-menstrual age (PMA), neurobehavioral outcomes were evaluated using the NNNS and buccal swabs were collected for further analysis. Mass spectrometry-based proteomics was conducted on epithelial cells obtained from buccal swabs to evaluate protein expression level. Lasso statistical methods were conducted to study the association between protein abundance and infants’ NNNS summary scores. Multiple linear regression and Gene Ontology (GO) enrichment analyses were performed to examine how clinical characteristics and neurodevelopmental outcomes may be associated with protein levels and underlying molecular pathways. 
Results During NICU hospitalization, preterm premature rupture of membrane (PPROM) were negatively associated with neurobehavioral outcomes. The protein functions including leptin receptor binding activity, glutathione disulfide oxidoreductase activity and response to oxidative stress, lipid metabolism, phosphate and proton transmembrane transporter activity were negatively associated with neurobehavioral outcomes, in the contrast, cytoskeletal regulation, epithelial barrier and protection function were found to be associated with the optimal neurodevelopmental outcomes. In addition, mitochondrial function associated proteins including SPRR2A, PAIP1, S100A3, MT-CO2, PiC, GLRX, PHB2, and BNIPL-2 demonstrated positive association with favorable neurodevelopmental outcomes, while proteins of ABLIM1, UNC45A, Keratins, MUC1, and CYB5B showed positive association with adverse neurodevelopmental outcomes. 
Conclusion Mitochondrial function-related proteins were observed to be associated with early life pain/stress and neurodevelopmental outcomes in infants. Large-scale studies with longitudinal datasets are warranted. Buccal proteins could be used to predict potential neurobehavioral outcomes.
DOI: 10.6084/m9.figshare.24099387
title: <b>Identification of lncRNA and weighted gene coexpression network analysis of germinating </b><b><i>Rhizopus delemar </i></b><b>causing mucormycosis</b>

description: In this study, novel lncRNA identification and weighted gene co-expression network analysis of germinating <i>Rhizopus delemar </i>which causes a fatal mucormycosis disease was done <i> </i>reusing a publically available data. Here we provide the GTF file of the novel transcripts for the assembly GCA_000149305.1 (<i>Rhizopus delemar</i> RA 99-880) as well class codes of the merged transcripts analyzed in this study.
DOI: 10.6084/m9.figshare.24099387.v3
title: <b>Identification of lncRNA and weighted gene coexpression network analysis of germinating </b><b><i>Rhizopus delemar </i></b><b>causing mucormycosis</b>

description: In this study, novel lncRNA identification and weighted gene co-expression network analysis of germinating <i>Rhizopus delemar </i>which causes a fatal mucormycosis disease was done <i> </i>reusing a publically available data. Here we provide the GTF file of the novel transcripts for the assembly GCA_000149305.1 (<i>Rhizopus delemar</i> RA 99-880) as well class codes of the merged transcripts analyzed in this study.
DOI: 10.6084/m9.figshare.24099387.v2
title: <b>Identification of lncRNA and weighted gene coexpression network analysis of germinating </b><b><i>Rhizopus delemar </i></b><b>causing mucormycosis</b>

description: In this study, novel lncRNA identification and weighted gene co-expression network analysis of germinating <i>Rhizopus delemar </i>which causes a fatal mucormycosis disease was done <i> </i>reusing a publically available data. Here we provide the GTF file of the novel transcripts for the assembly GCA_000149305.1 (<i>Rhizopus delemar</i> RA 99-880) as well class codes of the merged transcripts analyzed in this study.
DOI: 10.5281/zenodo.10557038
title: Increasing Activity of Trimetallic Oxygen Reduction PtNiMo/C Catalysts Through Initial Conditioning
DOI: 10.5281/zenodo.10557039
title: Increasing Activity of Trimetallic Oxygen Reduction PtNiMo/C Catalysts Through Initial Conditioning
DOI: 10.6084/m9.figshare.25102394
title: Planning Dosimetry Metrics for Planning and Volume Study

description: Planning Dosimetry Metrics for Planning and Volume Study. See https://www.sciencedirect.com/science/article/pii/S240563162400006X
DOI: 10.6084/m9.figshare.25102394.v1
title: Planning Dosimetry Metrics for Planning and Volume Study

description: Planning Dosimetry Metrics for Planning and Volume Study. See https://www.sciencedirect.com/science/article/pii/S240563162400006X
DOI: 10.6084/m9.figshare.24216858
title: Characterizing Python Library Migrations - artifacts

description: Artifacts for the paper <i>Characterizing Python Library Migrations</i>.This is the archival data linked to the paper. Please visit our GitHub repository for any future updates.
DOI: 10.6084/m9.figshare.24216858.v1
title: Characterizing Python Library Migrations - artifacts

description: Artifacts for the paper <i>Characterizing Python Library Migrations</i>.This is the archival data linked to the paper. Please visit our GitHub repository for any future updates.
DOI: 10.5281/zenodo.10579740
title: Dataset: How to...

description: This is a dataset for test
DOI: 10.5281/zenodo.10579741
title: Dataset: How to...

description: This is a dataset for test
DOI: 10.5281/zenodo.10579427
title: Dataset for the Paper: "Challenges of Utilizing Large Language Models for Automated Security Code Review"

description: This is the dataset for the paper: "Challenges of Utilizing Large Language Models for Automated Security Code Review", corresponding to the three steps described in Section 3.3 of this paper. In the following, we provide a brief description of the folder and the files.

1. Step 1 - Prompt and ResponseThis folder contains two subfolders: 'prompt' and 'response'. The 'prompt' folder contains all prompts constructed based on 549 code files and five prompt templates. The 'response' folder contains all responses generated by three Large Language Models (LLMs), i.e., GPT-3.5, GPT-4, and Gemini Pro, when feeding five types of prompts into the three LLMs.

2. Step 2 - Data Labelling for Calculating Performance.xlsxThis Excel file contains the data labelling results for all responses generated under each LLM-prompt combination. Based on the classification defined in the evaluation method utilized in our study, we have labelled the responses into four types: Instrumental, Helpful, Misleading, and Uncertain, in order to calculate performance scores.

3. Step 3 - Data Extraction for Quality Problem.mx22The MAXQDA project file is the results of data extraction for quality problems present in 82 responses generated by the best-performing LLM-prompt combination. This file can be opened by MAXQDA 2022 or higher versions, which are available at https://www.maxqda.com/ for download. You may also use the free 14 days trial version of MAXQDA 2024, which is available at https://www.maxqda.com/trial for download.
DOI: 10.5281/zenodo.10579428
title: Dataset for the Paper: "Challenges of Utilizing Large Language Models for Automated Security Code Review"

description: This is the dataset for the paper: "Challenges of Utilizing Large Language Models for Automated Security Code Review", corresponding to the three steps described in Section 3.3 of this paper. In the following, we provide a brief description of the folder and the files.

1. Step 1 - Prompt and ResponseThis folder contains two subfolders: 'prompt' and 'response'. The 'prompt' folder contains all prompts constructed based on 549 code files and five prompt templates. The 'response' folder contains all responses generated by three Large Language Models (LLMs), i.e., GPT-3.5, GPT-4, and Gemini Pro, when feeding five types of prompts into the three LLMs.

2. Step 2 - Data Labelling for Calculating Performance.xlsxThis Excel file contains the data labelling results for all responses generated under each LLM-prompt combination. Based on the classification defined in the evaluation method utilized in our study, we have labelled the responses into four types: Instrumental, Helpful, Misleading, and Uncertain, in order to calculate performance scores.

3. Step 3 - Data Extraction for Quality Problem.mx22The MAXQDA project file is the results of data extraction for quality problems present in 82 responses generated by the best-performing LLM-prompt combination. This file can be opened by MAXQDA 2022 or higher versions, which are available at https://www.maxqda.com/ for download. You may also use the free 14 days trial version of MAXQDA 2024, which is available at https://www.maxqda.com/trial for download.
DOI: 10.5281/zenodo.10037784
title: Data publication - Computation of X-ray and Neutron Scattering Patterns to Benchmark Atomistic Simulations against Experiments

description: Contains the data used for the publication "Computation of X-ray and Neutron Scattering Patterns to Benchmark Atomistic Simulations against Experiments" by A. Majumdar et al. published in the special issue Research on Molecular Dynamics 2.0 in the section Molecular Biophysics of International Journal of Molecular Sciences (DOI: 10.3390/ijms25031547).

The individual zip files contain a README.txt file each. They contain the following information:* custom_crystal: diffraction pattern of a perfect sphere in a cube (Fig. 6a)* lysozyme: diffraction pattern of the protein lysozyme in a cube of solvent (Fig. 6b)* sassena_speed: (a) dependence of the execution speed of Sassena depending on parameters like number of atoms, number of frames, ... (Fig. 7); (b) dependence of the execution speed of Sassena on the used compiler and different parallelization / vectorization settings (Figs. 8 and 9)* water: liquid water incoherent intermediate scattering functions and diffraction patterns (Figs. 1 and 5). Also contains the speed determination of the program liquidlib.
DOI: 10.5281/zenodo.10037785
title: Data publication - Computation of X-ray and Neutron Scattering Patterns to Benchmark Atomistic Simulations against Experiments

description: Contains the data used for the publication "Computation of X-ray and Neutron Scattering Patterns to Benchmark Atomistic Simulations against Experiments" by A. Majumdar et al. published in the special issue Research on Molecular Dynamics 2.0 in the section Molecular Biophysics of International Journal of Molecular Sciences (DOI: 10.3390/ijms25031547).

The individual zip files contain a README.txt file each. They contain the following information:* custom_crystal: diffraction pattern of a perfect sphere in a cube (Fig. 6a)* lysozyme: diffraction pattern of the protein lysozyme in a cube of solvent (Fig. 6b)* sassena_speed: (a) dependence of the execution speed of Sassena depending on parameters like number of atoms, number of frames, ... (Fig. 7); (b) dependence of the execution speed of Sassena on the used compiler and different parallelization / vectorization settings (Figs. 8 and 9)* water: liquid water incoherent intermediate scattering functions and diffraction patterns (Figs. 1 and 5). Also contains the speed determination of the program liquidlib.
DOI: 10.6084/m9.figshare.25102412.v1
title: Systematic Review Database Extraction Spreadsheet

description: Systematic Review Database Extraction Spreadsheet. See https://ro-journal.biomedcentral.com/articles/10.1186/s13014-022-02146-8
DOI: 10.6084/m9.figshare.25102412
title: Systematic Review Database Extraction Spreadsheet

description: Systematic Review Database Extraction Spreadsheet. See https://ro-journal.biomedcentral.com/articles/10.1186/s13014-022-02146-8
DOI: 10.5281/zenodo.10471805
title: Titanomagnetite Size Hysteresis

description: Data and example merrill scripts for the paper Magnetic Domain States and Critical Sizes in the Titanomagnetite Series
DOI: 10.5281/zenodo.10471806
title: Titanomagnetite Size Hysteresis

description: Data and example merrill scripts for the paper Magnetic Domain States and Critical Sizes in the Titanomagnetite Series
DOI: 10.57745/lips1k
title: 162585.tar

description: :unav
DOI: 10.57745/nir0dg
title: 162611.tar

description: :unav
DOI: 10.57745/x9affk
title: 162639.tar

description: :unav
DOI: 10.57745/ajkm9w
title: 162614.tar

description: :unav
DOI: 10.57745/e9wejl
title: 162608.tar

description: :unav
DOI: 10.57745/lssbyv
title: 162631.tar

description: :unav
DOI: 10.57745/stbxu8
title: 162602.tar

description: :unav
DOI: 10.57745/tfmwlk
title: 162610.tar

description: :unav
DOI: 10.57745/z4moxd
title: 162654.tar

description: :unav
DOI: 10.57745/8zlyaz
title: 162632.tar

description: :unav
DOI: 10.57745/kmolfz
title: 162717.tar

description: :unav
DOI: 10.57745/l7bzhq
title: 162582.tar

description: :unav
DOI: 10.57745/uxhyvb
title: 162806.tar

description: :unav
DOI: 10.57745/wtgkrx
title: 162813.tar

description: :unav
DOI: 10.57745/08sjr9
title: 162578.tar

description: :unav
DOI: 10.57745/2odomy
title: 162712.tar

description: :unav
DOI: 10.57745/aft3ha
title: 162603.tar

description: :unav
DOI: 10.57745/goqjyl
title: 162604.tar

description: :unav
DOI: 10.57745/kyf2fw
title: 162601.tar

description: :unav
DOI: 10.57745/aktamq
title: 162644.tar

description: :unav
DOI: 10.57745/bm4vef
title: 162808.tar

description: :unav
DOI: 10.57745/qzbalx
title: 162811.tar

description: :unav
DOI: 10.57745/rwi7ym
title: 162580.tar

description: :unav
DOI: 10.57745/umyz5b
title: 162635.tar

description: :unav
DOI: 10.34740/kaggle/dsv/7505583
title: 2021 World Population (updated daily)