cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7938947.v1
title: gVCF_NA20524

description: 1000 Genomes gVCF mapped to hs37d5 for NA20524. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.878253_d57
title: substrate_temperature_degC_soil_0_shade.zip

description: Substrate temperature (deg C) at depths of 0, 2.5, 5, 10, 15, 20, 30, 50 and 100 cm under ground assuming a soil substrate and 0% shade from vegetation. Each netCDF file contains 24 layers of global extent, one for each hour of the day (starting at 0:00 hrs) for a given month of the year, at ~15km resolution.
 
 
Fileset Description:
The microclim dataset provides microclimate estimates of conditions above and below ground for each hour of the day for the middle day of each month based on a long-term average climatology. Details of this dataset are presented in [Kearney et al. 2014].
The dataset comprises a set of NetCDF files with one file per variable per month, each file comprising 24 layers (one for each hour of the day from 0:00 hrs to 23:00 hrs, so layer 13 is 12:00 midday) for the globe (852 rows, 2159 columns, latitudinal extents -58.57 to 83.43 degrees, longitudinal extents -180.00 to 180.00 degrees). For the naming convention, mon is month of the year (1 to 12, where 1 = Jan, 12 = Dec), shd is shade level in % (0, 25, 50, 75, 90, 100), and sub is substrate (soil, rock, sand).
To facilitate downloading the data, the NetCDF files are grouped into compressed (zipped) files, one per variable per shade and substrate type, each comprising all monthly values and, for the substrate temperatures, all depths. Note that not all variables are shade or substrate specific, specifically zenith angle, wind speeds, solar radiation, and 120 cm air temperature and relative humidity.
DOI: 10.17632/2chcwnhpwj
title: Supplementary Material - Patients’ and dermatologists’ preferences in AI-driven skin cancer diagnostics: prospective multicentric survey study

description: This document contains the following sections:
1. Supplementary Methods where we provide a detailed description of the questionnaire development, the survey structure, the participant recruitment, and the statistical analysis.
2. Supplementary Results where we describe the participant characteristics, further details on the patients’ and dermatologists’ perspective, and limitations of our study.
DOI: 10.17632/3dr9r3w3jn
title: An expertized grapevine disease image database focused on Flavescence dorée and its confounding diseases

description: Grapevine is a plant subject to many diseases, deficiencies and is vulnerable to many pests. The current disease controls consist in monitoring the vineyard and the spraying of phytosanitary products at the block scale. The automatic detection of disease symptoms would allow a reduction of these products for the treatment of these diseases before they spread. Flavescence dorée (FD) is one of the most monitored vine diseases in Europe as it decreases vine productivity while being very infectious and leading to significant yield losses. The diagnosis of FD is usually done by the association of symptoms on 3 organs (leaf, shoot and bunch). It is carried out by experts, as many others diseases and stresses, either biotic or abiotic, imply similar symptoms. These experts require a decision support tool to better plan their survey to improve the efficiency of their scouting.
To work towards this goal, a dataset composed of 1483 RGB images showing vines suffering from various diseases and stresses, was acquired. In particular, it is focused on the grapevine disease called Flavescence dorée (FD) and its confounding factors and diseases. Images of 5 grape varieties (Cabernet Sauvignon, Cabernet Franc, Merlot, Ugni Blanc and Sauvignon Blanc) were acquired during 2 years (2020 and 2021) in the field by proximal sensing. Images were taken through vine rows identified by scouting experts as containing many cases of FD. They pointed out vines affected by FD, ESCA or vines showing symptoms similar to those of FD. In order to see entire vines in the images, images were acquired at a distance between 1 and 2 meters depending on the row width. An industrial flash ensured a constant luminance on the images regardless of the environmental circumstances. 
Two types of annotations have been made. First, an annotation at the image scale: an annotation file containing the diagnosis of the experts at the vine scale was filled directly in the field for each image. Secondly, an annotation at the symptom scale: the same scouting experts were asked to annotate on a computer the symptoms present on the images. They annotated 744 images by creating bounding boxes around the interesting leaves and separated them into 3 classes: ‘FD symptomatic leaves’, ’Esca symptomatic leaves’ and ‘Confounding leaves’, this last class containing all the leaves different from healthy leaves. In addition, on 110 of these images, symptomatic bunches and shoots were respectively annotated by bounding boxes and broken lines. Finally, 128 segmentation masks were created in which each pixel was classified into 4 classes: either it was a pixel of a symptomatic shoot, a symptomatic bunch, a healthy bunch or a pixel of neither of these three.
DOI: 10.17632/t5ngdp4vmc
title: Experimental Dataset: Reciprocity and Uncertainty

description: This dataset comprises the data I gathered in the experiments I run for the paper "Reciprocity and Uncertainty: When Do People Forgive?". I also include the Do Files, which can be used to replicate all the results shown in the paper. A censored version of the zTree output files, without the name and personal id of participants, can be sent upon request.
DOI: 10.6084/m9.figshare.12696653.v2
title: MAG-Scholar

description: The MAG-Scholar dataset introduced in the paper "Scaling Graph Neural Networks with Approximate PageRank"<br>See the readme file for more details.
DOI: 10.6084/m9.figshare.13191683.v1
title: Triple SILAC identified progestin-independent and dependent PRA and PRB interacting partners in breast cancer

description: Dataset of progesterone receptor A and B (PRA and PRB) interacting partners both progesterone-independent and dependent using affinity purification coupled with triple SILAC-LC-MS/MS.
DOI: 10.6084/m9.figshare.24401146.v2
title: R script and data from: Fallen trees as “natural bridges” for the movement of mammals crossing rivers

description: Script and datasets to reproduce all analyses from: Fallen trees as “natural bridges” for the movement of mammals crossing rivers
DOI: 10.6084/m9.figshare.7275800.v1
title: Supplementary Material for: Sialendoscopy for Definitive Management of a Submandibular Abscess following Radiotherapy for Oropharyngeal Squamous Cell Carcinoma

description: <b><i>Background/Aims:</i></b> Sialendoscopy has as yet been shown to be ideal for the management of sialolithiasis and chronic inflammatory diseases of the salivary gland. However, its applicability to the management of a broad range of salivary gland disease is continually growing. <b><i>Methods:</i></b> Here we present a case report where sialendoscopy was used to successfully manage an intraparenchymal submandibular gland abscess in a patient with oropharyngeal squamous cell carcinoma managed with primary chemoradiation. <b><i>Results:</i></b> The use of sialendoscopy enabled visualization of the patency of salivary ducts, drainage of abscess, and irrigation of antibiotic-impregnated fluid. In this particular patient, we were able to avoid a transcervical approach through a previously irradiated field, which would have necessitated concurrent tracheostomy and placed undue risk to surrounding neurovascular structures. <b><i>Conclusion:</i></b> Sialendoscopy should thus, in select patients, be considered as an initial intervention for patients with intraparenchymal salivary gland abscesses in which prior therapy creates an increased risk of complication from an open transcervical approach.
DOI: 10.6084/m9.figshare.8870053.v4
title: Extended data on the study 'Levels of Mercury in Nile tilapia (Oreochromis niloticus), water, and sediment in the gold mining belt of Migori, Kenya, and the potential ramifications to human health' by Kola et al

description: This data represents <br>1. The ethical approval form of the biosafety, animal use and ethics committee of the University of Nairobi. (Figure S1)<br><br>2. The total number of sediment, water, and fish tissues collected from the ten sites in the study area. (Table S1).<br><br>3. A summary of the reagents and chemicals used in the analysis. (Table S2).<br><br>4. Characteristics of the ecosystems of the fish ponds where water, sediment, and fish were collected. (Table S3).<br><br>5. Overview of the computed data (statistical analysis). Table S4 to Table S15. <br><br>
DOI: 10.17632/bj3nwk3wpm
title: Ryan et al., 2021

description: Supplementary data to the paper "Syn-orogenic exhumation of high-P units by upward extrusion in an accretionary wedge: Insights from the Eastern Elba nappe stack (Northern Apennines, Italy), submitted to Tectonics. Autors: Ryan, E., Papeschi, S., Viola, G., Musumeci, G., Mazzarini, F., Torgersen, E., Sørensen, B.E. and Ganerød, M.
DOI: 10.17632/bt2wbhdg3g
title: Data for: Drivers of cocoa agroforestry adoption by smallholder farmers around the Taï National Park in southwestern Côte d’Ivoire

description: This file contains records on 323 surveyed people in southwestern Cote d'Ivoire. The study evaluated farmers agricultural practices, their motivation and demotivation to practice agroforestry around the Tai National Park
DOI: 10.6084/m9.figshare.28282742.v1
title: Hedera data

description: Summary of transactions in Hededera Hashgraph DAG blockchain. Extracted from https://app.dragonglass.me
DOI: 10.17632/5zkxms9tst
title: Journal of Urban Economics - Unlocking Neighborhood Density

description: Unlocking Neighborhood Density
Authors: Melanie Krause, André Seidel

This code and data accompanies the paper "Unlocking Neighborhood Density" intended for publication in the *Journal of Urban Economics* (2024). 
It includes contributions from Melanie Krause and André Seidel in data processing and analysis.

Please cite as:
Krause, M. & Seidel, A. (2024), "Unlocking Neighborhood Density", *Journal of Urban Economics*.

For inquiries related to this code, please contact the authors.
DOI: 10.17632/t2m8vny25k
title: Data for: The time-dependent pickup and delivery problem with time windows

description: This dataset contains 32 instances of the time dependent pick up and delivery problem with 10 to 45 customer request (20 to 90 nodes). the first row is number of vehicles the second row is vehicle's capacity the third row is planning time horizon [Depot] idx; x-coordinate; y-coordinate; 0; 0; [Pickup] idx; x-coordinate; y-coordinate; 0; load; profit; earliest time window; latest time window. [Delivery] [Pickup] idx; x-coordinate; y-coordinate; 0; load; 20; earliest time window; latest time window. [Speed 0] [Speed 1] [Speed 2] [Speed 3] [Speed 4] Five different speed profile; [speed choose matrix] For each links, it has a speed profile. For instances, the link (0,4) is assigned with speed profile 1, which is given by [Speed 1].
DOI: 10.17632/wc7nxf93ym
title: curvedSpaceSim: A framework for simulating particles interacting along geodesics

description: A large number of powerful, high-quality, and open-source simulation packages exist to efficiently perform molecular dynamics simulations, and their prevalence has greatly accelerated discoveries across a wide range of scientific domains. These packages typically simulate particles in flat (Euclidean) space, with options to specify a variety of boundary conditions. While more exotic, many physical systems are constrained to and interact across curved surfaces, such as organisms moving across the landscape, colloids pinned at curved fluid-fluid interfaces, and layers of epithelial cells forming highly curved tissues. The calculation of distances and the updating of equations of motion in idealized geometries (namely, on surfaces of constant curvature) can be done analytically, but it is much more challenging to efficiently perform molecular-dynamics-like simulations on arbitrarily curved surfaces. This article discusses a simulation framework which combines tools from particle-based simulations with recent work in discrete differential geometry to model particles that interact via geodesic distances and move on an arbitrarily curved surface. We present computational cost estimates for a variety of surface complexities with and without various algorithmic specializations (e.g., restrictions to short-range interaction potentials, or multi-threaded parallelization). Our flexible and extensible framework is set up to easily handle both equilibrium and non-equilibrium dynamics, and will enable researchers to access time- and particle-number-scales previously inaccessible.
DOI: 10.6084/m9.figshare.7105073.v1
title: FIGURE 7. FTIR spectra of 16%wt. Chitosan in PVC, Chitosan in PAN, PVC in PVP.

description: Figure 7<b> </b>shows the FTIR absorption spectra of PAN powder incorporated with 16wt% chitosan powder. The FTIR spectra of this combination provide some nitrile groups, equivalent to 669 cm-1.
DOI: 10.17632/2crz5nd4w3
title: Active psychosis and other clinical variables during early phases of the illness in first-episode psychosis on functional outcome in the PAFIP 10-year follow-up study.

description: We present data concerning the clinical and sociodemographic characteristics of a sample of drug-naïve patients with a first episode of non-affective psychosis. The dataset was obtained from a 3-year longitudinal intervention program as part of an ongoing 10-year epidemiological study.
DOI: 10.17632/6gjn2fmz86
title: Post-wildfire Generation of Debris-flow Slurry by Rill Erosion on Colluvial Hillslopes

description: The excel workbook contains: 
All original data used to support the results and conclusions in the paper, including: Rill transect locations and measurements performed on SfM DEMs, Hillslope and watershed measurements performed on the 1-m LiDAR derived DEM, rill mapping performed on the orthomosaic, volumetric calculations, infiltration data from Kean et al. (2019), infiltration curves, runoff calculations, and the sediment budget for a primary rill on a straight hillslope. 

The GIS map package contains: 
Rill transects, rill map shapefiles, 5cm resolution SfM orthomosaics and DEMs, a 30cm orthomosaic (provided by John Warrick at the USGS), geologic contacts, watershed boundaries, infiltration measurement locations, and the flow accumulation grid used for volumetric estimates.
DOI: 10.17632/6xg75kr8gb
title: Reasons for the superior annealing-induced hardening behavior of the Cr27.3Co33.3Ni33.3Mo6 and MP35N alloys compared to the equiatomic CrCoNi medium-entropy alloy

description: In this compilation of data, we unconver reasons for the superior annealing-induced hardening behavior of the Cr27.3Co33.3Ni33.3Mo6 (Mo-6) and MP35N alloys compared to the equiatomic CrCoNi (Mo-0) medium-entropy alloy. All the data are ORIGIN and EXCEL files (.opj and .xlsx). Here is a short description of the origin files, which are numbered according to their order of appearence in the corresponding research article and supplementary materials: 
FigS1: Reproducibility of tensile tests.
Fig01+S2+S3: Vickers microhardness of Mo-6 after two-step hardening.
Fig02: Tensile responses of Mo-0 and Mo-6 MEAs. 
Fig06: 1D-composition profiles (crossing a GB and TBs) of the elements extracted from APT experiments.
Fig07: The plot shows the temperature dependence of Vickers microhardness over the whole longitudinal-section of the Mo-0 and Mo-6 MEAs, from which the recrystallization temperature can be determined.
Fig08: Effect of plastic deformation and post-deformation condition (as-swaged and post-deformation annealed for 4 h at 773 or 923 K) on the yield stress and ultimate tensile strength (UTS) in Mo-0 and Mo-6 MEAs.
Fig10+S11: Relative strengthening related to post-deformation annealing in the Mo-0 and Mo-6 MEAs.
Fig11: Ashby map showing the ultimate tensile strength as a function of elongation to fracture of CrCoNi-based MEAs and HEAs.
FigS9+S10: XRD patterns of Mo-6 and MP35N.
DOI: 10.17632/ckc3hgz2dh
title: Data for: Estimation of deformation intensity above a flooded potash mine near Berezniki (Perm Krai, Russia) with SAR interferometry

description: RADARSAT-2 and Sentinel-1 differential interferograms and deformation time series and linear rates for Berezniki-1 potash mine (Perm Krai, Russia) during November 2011 – April 2014 and July 2016 – June 2020. See corresponding paper in Remote Sensing (https://www.mdpi.com/journal/remotesensing) for more information.
DOI: 10.6084/m9.figshare.15067050.v2
title: Supplemental Materials for: Bed Shear Stress in Experimental Flash Flood Bores over Dry Beds and over Flowing Water: A Comparison of Methods

description: <strong>List of Supplemental Tables<br> </strong> <strong>Table S1.</strong> Average water depth and average turbulent velocities in all experimental runs. <strong>Table S2.</strong> Calculation of bed shear stress for the <em>S</em><sub><em>f</em></sub> -n(t),<em> S</em><sub><em>f</em></sub> -<em>n</em> constant, <em>S</em><sub><em>f</em></sub> –water surface slope, Colebrook, log-law methods. <strong>Table S3.</strong> Average bed shear stress for <em>τ</em><sub><em>b</em></sub>-TKE, TKE w<sup>’</sup> and Reynolds stress methods.
DOI: 10.6084/m9.figshare.20375580.v1
title: AppClassNet - A commercial-grade dataset for application identification research

description: <br> <strong>AppClassNet </strong>is a <strong>commercial-grade dataset</strong> that represent a realistic benchmark for the use-case of traffic classification and management. <br> The AppClassNet dataset is complemented by <strong>companion artifacts </strong>containing baseline code to train and test state of the art baseline models for a quick boostrap. <br> A description of the dataset, the expected performance of the baseline models, the allowed and forbidden usages of the dataset, and more is available in a<strong> companion technical report [1]</strong> <br> <strong>[1] https://dl.acm.org/doi/10.1145/3561954.3561958 </strong> <br>
DOI: 10.6084/m9.figshare.25283356.v1
title: PIVCA Dataset

description: Dataset for multicentre study describing the placement, maintanance and complications of peripheral intravenous catheters in the UK
DOI: 10.6084/m9.figshare.28829870.v4
title: Table S6, VFDB summary

description: Table S6, VFDB summary: Bacterial virulence genes were predicted with the Virulence Factors of Pathogenic Bacteria (VFDB).
DOI: 10.4121/uuid:1fe39afe-7973-4a5a-89f0-e2a672c286ee
title: Discharge of the river Rhine and river Waal

description: Dataset containing measured discharge data of Rhine and Waal river plus additional data, used for a model to compute navigability of these rivers, including output data
DOI: 10.6084/m9.figshare.21424239.v2
title: DSC data

description: DSC data
DOI: 10.6084/m9.figshare.28945841.v1
title: Operationalizing Geographic Diversity for the Evaluation of AI‐Generated Content

description: This dataset contains content generated by six large language models, including GPT‐3.5, GPT‐4o, Mistral 7B, Mistral Large, Claude 3 Haiku, and Claude 3.5 Sonnet. Please refer to our paper for more details on the process of content generation.
DOI: 10.6084/m9.figshare.9201770.v2
title: DepMap 19Q3 Public

description: This dataset contains the results of Avana library CRISPR-Cas9 genome-scale knockout (prefixed with Achilles) as well as mutation, copy number and gene expression data (prefixed with CCLE) for cancer cell lines as part of the Broad Institute’s Cancer Dependency Map project. We have repackaged our fileset to include all quarterly-updating datasets produced by DepMap.<br>The Avana CRISPR-Cas9 genome-scale knockout data has expanded to include 625 cell lines, the RNAseq data includes 1,210 cell lines, and the copy number data includes 1,657 cell lines. Please see the README files for details regarding data processing pipeline procedures updates.<br>As our screening efforts continue, we will be releasing additional cancer dependency data on a quarterly basis for unrestricted use. For the latest datasets available, further analyses, and to subscribe to our mailing list visit https://depmap.org.<br>Descriptions of the experimental methods and the CERES algorithm are published in http://dx.doi.org/10.1038/ng.3984. Additional Achilles processing information is published here https://www.biorxiv.org/content/10.1101/720243v1.full. Some cell lines were process using copy number data based on the Sanger Institute whole exome sequencing data (COSMIC: http://cancer.sanger.ac.uk.cell_lines, EGA accession number: EGAD00001001039) reprocessed using CCLE pipelines. A detailed description of the pipelines and tool versions for CCLE expression can be found here: https://github.com/broadinstitute/gtex-pipeline/blob/v9/TOPMed_RNAseq_pipeline.md.<br>version 2: uploaded a new version of CCLE_gene_cn.csv to correctly reflect released cell lines.
DOI: 10.6084/m9.figshare.c.3850801_d2.v1
title: Additional file 2: Table S2. of ODG: Omics database generator - a tool for generating, querying, and analyzing multi-omics comparative databases to facilitate biological understanding

description: PFam Domains and biological process GO categories for the four rhizobia strains. Predicted proteins related to multiple GO biological process categories are joined together with the pipe character. (XLSX 639Â kb)
DOI: 10.17632/4pxbpc6d5c
title: Data and code for: Continual Learning in a Multi-Layer Network of an Electric Fish

description: Here you can find data and Matlab code to generate figures of the paper: "Continual Learning in a Multi-Layer Network of an Electric Fish", Cell 2019.
DOI: 10.22023/mdx.11568306.v1
title: Phrases used in the validation of the text classifier of the virtual assistant for personalised asthma management (ADAPT)

description: This data set was used to validate the text classifier of the virtual assistant that is reported in ADAPT.<br>These phrases are those suggested by people with asthma and carers of people with asthma to represent normal or deteriorated health status. The phrases were collected through a questionnaire that was spread through the Patients Advisory Group of Asthma UK.
DOI: 10.17632/2cpn5xjc66
title: Data for: Dynamics of Australia's LNG Export Performance: A modified Constant Market Shares analysis

description: We therefore extracted the earliest available LNG import data (HS 271111, natural gas, liquefied) from the UN Comtrade database. This starts from 1988 and employs the HS1988/92 nomenclature. Since partner countries first reported LNG imports from Australia in 1989, our analysis starts from 1989. A total of 172 observations of LNG imports from Australia between 1989 and 2017 were reported, all of which had information about the partner countries. This enabled us to employ the CMS analysis to measure the dynamics of Australia’s LNG exports.
DOI: 10.17632/zkpwhrrfng
title: A C++ code for simulations of RHEED intensity oscillations within the kinematical approximation

description: This paper proposes a new software implementation for the rapid development and deployment of computer simulations of reflection high-energy electron diffraction (RHEED) intensity oscillations during the growth of thin epitaxial films. The calculations are based on the kinematical approximation. In this model the RHEED intensity oscillations from growing layers is considered as an effect of changes of surface roughness.

The previous version of this program (ADVL) may be found at https://doi.org/10.1016/j.cpc.2005.04.005.
DOI: 10.6084/m9.figshare.24721461.v1
title: DFT_calculation.tar.gz

description: DFT calculations