cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.7t3y59
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Diomedea immutabilis Rothschild, 1893",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027474-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26316580
title: Supplementary Material for: Successful EGFR Mutation Detection in Cytological Specimens of Lung Cancer with Challenging Biopsies by Integrating Virtual Bronchoscopy Navigation and Endobronchial Ultrasound Guidance with Highly Sensitive Next-Generation Sequencing: A Case Report

description: Introduction: This case report presents the successful detection of an EGFR exon 19 deletion using virtual bronchoscopic navigation (VBN) and endobronchial ultrasound with guide sheath (EBUS-GS) brushing, integrated with highly sensitive next-generation sequencing (NGS), even in challenging biopsy scenarios. The growing prevalence of driver gene alterations in non-small cell lung cancer necessitates effective bronchoscopic technology and reliable multiplex gene NGS panels. However, data regarding the optimal bronchoscopic techniques when using highly sensitive NGS panels are limited. Herein, we report a case utilizing VBN-guided EBUS-GS brushing as an exploratory approach to address this challenge. 
Case presentation: A 71-year-old man was evaluated for a band-like lesion near the left pleura during spinal cord infarction. Transbronchial specimens were obtained from lesions invisible on conventional chest radiography and X-ray fluoroscopy using VBN and EBUS-GS brushing. Cytological brushing specimens revealed lung adenocarcinoma, and highly sensitive NGS identified an EGFR exon 19 deletion. He was diagnosed with stage IB disease and underwent radical radiotherapy owing to his fragile condition. If recurrence occurs, the patient will be treated with an EGFR inhibitor.
Conclusion: VBN-guided EBUS-GS brushing, a minimally invasive approach, combined with highly sensitive NGS has the potential to provide accurate molecular diagnoses to more patients with lung cancer, thereby offering opportunities for personalized treatment. Our findings warrant further investigation to determine optimal bronchoscopic technologies for obtaining tumor specimens.
DOI: 10.6084/m9.figshare.26316580.v1
title: Supplementary Material for: Successful EGFR Mutation Detection in Cytological Specimens of Lung Cancer with Challenging Biopsies by Integrating Virtual Bronchoscopy Navigation and Endobronchial Ultrasound Guidance with Highly Sensitive Next-Generation Sequencing: A Case Report

description: Introduction: This case report presents the successful detection of an EGFR exon 19 deletion using virtual bronchoscopic navigation (VBN) and endobronchial ultrasound with guide sheath (EBUS-GS) brushing, integrated with highly sensitive next-generation sequencing (NGS), even in challenging biopsy scenarios. The growing prevalence of driver gene alterations in non-small cell lung cancer necessitates effective bronchoscopic technology and reliable multiplex gene NGS panels. However, data regarding the optimal bronchoscopic techniques when using highly sensitive NGS panels are limited. Herein, we report a case utilizing VBN-guided EBUS-GS brushing as an exploratory approach to address this challenge. 
Case presentation: A 71-year-old man was evaluated for a band-like lesion near the left pleura during spinal cord infarction. Transbronchial specimens were obtained from lesions invisible on conventional chest radiography and X-ray fluoroscopy using VBN and EBUS-GS brushing. Cytological brushing specimens revealed lung adenocarcinoma, and highly sensitive NGS identified an EGFR exon 19 deletion. He was diagnosed with stage IB disease and underwent radical radiotherapy owing to his fragile condition. If recurrence occurs, the patient will be treated with an EGFR inhibitor.
Conclusion: VBN-guided EBUS-GS brushing, a minimally invasive approach, combined with highly sensitive NGS has the potential to provide accurate molecular diagnoses to more patients with lung cancer, thereby offering opportunities for personalized treatment. Our findings warrant further investigation to determine optimal bronchoscopic technologies for obtaining tumor specimens.
DOI: 10.15468/dl.nseejf
title: Occurrence Download

description: A dataset containing 271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthosepion esculentum (Hoyle, 1885)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 271 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027475-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqqyp2
title: Occurrence Download

description: A dataset containing 267 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sepia esculenta Hoyle, 1885",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 267 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027477-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r7dwzn
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cynoglossus abbreviatus (Gray, 1834)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 76 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027478-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tzazhg
title: Occurrence Download

description: A dataset containing 68514 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Larrea tridentata (DC.) Coult."
 ]
}

 The dataset includes 68514 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027476-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nyrtxk
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pampus echinogaster (Basilewsky, 1855)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 23 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027479-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p9wr8r
title: Occurrence Download

description: A dataset containing 376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pampus argenteus (Euphrasen, 1788)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 376 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027480-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qwh76q
title: Occurrence Download

description: A dataset containing 193 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Icelus cataphractus (Pavlenko, 1910)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 193 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027481-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kbk84n
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thunnus tonggol (Bleeker, 1851)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 49 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027482-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ez97w
title: Occurrence Download

description: A dataset containing 254 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plectorhinchus cinctus (Temminck & Schlegel, 1843)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 254 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027484-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fd8n3d
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Houpoea officinalis (Rehder & E.H.Wilson) N.H.Xia & C.Y.Wu"
 ]
}

 The dataset includes 51 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027485-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7686xy
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mongolia",
 "TaxonKey is Equus hemionus hemionus"
 ]
}

 The dataset includes 50 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027487-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mvyvgt
title: Occurrence Download

description: A dataset containing 770 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Konosirus punctatus (Temminck & Schlegel, 1846)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 770 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027486-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vf7wkf
title: Occurrence Download

description: A dataset containing 210 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Globicephala macrorhynchus Gray, 1846",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 210 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027488-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nach8v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Globicephalus macrorhynchus Gray, 1846",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027490-240626123714530/datasets/export for details.
DOI: 10.15468/dl.geezee
title: Occurrence Download

description: A dataset containing 686 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malacocottus zonurus Bean, 1890",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 686 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027491-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5wsm4n
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malacocottus kincaidi Gilbert & Thompson, 1905",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027492-240626123714530/datasets/export for details.
DOI: 10.5281/zenodo.10042398
title: Efficient spherical quadrature rules with positive weights

description: The function "SphQuadrat.m" returns efficient quadrature rules on the sphere in a 3-dimensional space. The quadrature rules consist of the coordinates of the samling points and the (positive) weights of each point. Cartesian and spherical coordinate systems are available; please note that the notation of elevation angles θ in the spherical coordinate systems differs from that in MATLAB. That is, the function returns vertical angles θ measured from the z-axis.

Available exactitude degrees of the quadratures are 0,2,4,...,100.

MAT files containing the points and the weights of the quadratures are named as "xxx-yyyyy.mat", where "xxx" denotes the degree of exactitude and "yyyyy" denotes the number of points.

By default, the weights are normalized as sum(weight)=1, while the function also provides 4pi-normalization sum(weight)=4*pi and the-number-of-points-normalization sum(weight)=numel(weight).

Reference: Manuel Gräf, Efficient Algorithms for the Computation of Optimal Quadrature Points on Riemannian Manifolds, Ph.D. thesis, Technische Universität Chemnitz, (2013)
DOI: 10.5281/zenodo.10042399
title: Efficient spherical quadrature rules with positive weights

description: The function "SphQuadrat.m" returns efficient quadrature rules on the sphere in a 3-dimensional space. The quadrature rules consist of the coordinates of the samling points and the (positive) weights of each point. Cartesian and spherical coordinate systems are available; please note that the notation of elevation angles θ in the spherical coordinate systems differs from that in MATLAB. That is, the function returns vertical angles θ measured from the z-axis.

Available exactitude degrees of the quadratures are 0,2,4,...,100.

MAT files containing the points and the weights of the quadratures are named as "xxx-yyyyy.mat", where "xxx" denotes the degree of exactitude and "yyyyy" denotes the number of points.

By default, the weights are normalized as sum(weight)=1, while the function also provides 4pi-normalization sum(weight)=4*pi and the-number-of-points-normalization sum(weight)=numel(weight).

Reference: Manuel Gräf, Efficient Algorithms for the Computation of Optimal Quadrature Points on Riemannian Manifolds, Ph.D. thesis, Technische Universität Chemnitz, (2013)
DOI: 10.15468/dl.2hzse7
title: Occurrence Download

description: A dataset containing 611 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pyrhila pisum (De Haan, 1841)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 611 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027493-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b45vzv
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Semicossyphus reticulatus (Valenciennes, 1839)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 44 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027494-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pqjmkd
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eleginus gracilis (Tilesius, 1810)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 37 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027495-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k6up9t
title: Occurrence Download

description: A dataset containing 321 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((131.99215 -2.36788,134.38073 -2.36788,134.38073 -0.18814,131.99215 -0.18814,131.99215 -2.36788))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhododendron L."
 ]
}

 The dataset includes 321 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027497-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ba8yz
title: Occurrence Download

description: A dataset containing 478 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Okamejei kenojei (Müller & Henle, 1841)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 478 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027498-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3wvwsf
title: Occurrence Download

description: A dataset containing 298 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Gopherus flavomarginatus Legler, 1959"
 ]
}

 The dataset includes 298 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027500-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yg3dy6
title: Occurrence Download

description: A dataset containing 67366 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aedes aegypti (Linnaeus, 1762)"
 ]
}

 The dataset includes 67366 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027501-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5jutrb
title: Occurrence Download

description: A dataset containing 67366 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aedes aegypti (Linnaeus, 1762)"
 ]
}

 The dataset includes 67366 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027502-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.839rxs
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Okamejei kenojei (Bürger, 1841)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027503-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12754210
title: Occurrence data for 18 tree species used in a common garden experiment

description: Occurance data for 18 tropical rainforest tree species from across their home range downloaded from gbif, processed and used in the determination of ecoclimatic niche maps as part of work examinnig variation in growth and survival when grown under contrasting common garden sites
DOI: 10.5281/zenodo.12754211
title: Occurrence data for 18 tree species used in a common garden experiment

description: Occurance data for 18 tropical rainforest tree species from across their home range downloaded from gbif, processed and used in the determination of ecoclimatic niche maps as part of work examinnig variation in growth and survival when grown under contrasting common garden sites
DOI: 10.15468/dl.w92fg9
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ariosoma meeki (Jordan & Snyder, 1900)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 95 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027505-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.egc8yt
title: Occurrence Download

description: A dataset containing 4158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "TaxonKey is Gardenia jasminoides J.Ellis"
 ]
}

 The dataset includes 4158 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027504-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12723408
title: Q matrix data for the problems studied using Flexible-PEPS simulator.

description: How to read the Q matrix:Load the dictionary, say as "main_dictionary".

Q_dictionary=main_dictionary['Q_dict']

Q_dictionary['(x,y)']=value_xyvalue_xy is the Q matrix strength between the vertices (x, y), here x, y are integers starting from 1, to N, where N is the number of qubits (number of variables) in the system.
DOI: 10.5281/zenodo.12723409
title: Q matrix data for the problems studied using Flexible-PEPS simulator.

description: How to read the Q matrix:Load the dictionary, say as "main_dictionary".

Q_dictionary=main_dictionary['Q_dict']

Q_dictionary['(x,y)']=value_xyvalue_xy is the Q matrix strength between the vertices (x, y), here x, y are integers starting from 1, to N, where N is the number of qubits (number of variables) in the system.
DOI: 10.15468/dl.ybe5x3
title: Occurrence Download

description: A dataset containing 252 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scomber australasicus Cuvier, 1832",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 252 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027506-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.