cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5qr4p228
title: MassIVE MSV000094160 - RNA quality control factors nucleate Clr4/SUV39H and trigger constitutive heterochromatin assembly
title: RNA surveillance (MTREC) and degradation (exosome) complexes nucleate Clr4/SUV39H at a heterochromatic long noncoding RNA, at which the two deacetylases, Sir2 and Clr3, also amass by distinct mechanisms. Iterative cycles of H3K9 deacetylation and methylation spread Clr4 from the nucleation center which with the help from RNAi establish heterochromatin. (this is like the abstract for the paper) To identify nuclear Sir2-interacting proteins, a protocol was adopted by which frozen intact nuclei suitable for biochemical purifications were released by low pressure, semi-automated cryogrinding of frozen yeast pellets after which the nuclei were isolated by differential centrifugation. From these nuclear extracts, FLAG-tagged Sir2 was purified and analyzed by nanoscale micro-capillary tandem mass spectrometry.
DOI: 10.15151/esrf-es-1535410462
title: Structural Biology at EMBL Grenoble, IBS-CIBB and IAB

description: This proposal clusters crystallography and bioSAXS projects at the EMBL Grenoble, IBS-CIBB and IAB. It combines groups working on different topics with a major focus on cell signaling proteins, drug discovery, long non-coding RNAs, nucleic acid-protein complexes, and host-pathogen interactions. The proposers have long-standing experience in the use, as well as the development of beam lines for macromolecular crystallography and biological small angle X-ray scattering and have participated in successive BAG applications over the years, mostly at the ESRF but also at other synchrotrons (i.e. Soleil, Petra III, and Diamond). As Stephen Cusack (former head of EMBL Grenoble) will be retiring at the end of 2023 we propose to change the BAG responsible to Andrew McCarthy for this application round.
DOI: 10.5281/zenodo.10702543
title: Factors influencing the Russian derivatives market
DOI: 10.5281/zenodo.10702544
title: Factors influencing the Russian derivatives market
DOI: 10.6084/m9.figshare.24367747
title: Hereditary transthyretin amyloidosis in middle-aged and elderly patients with idiopathic polyneuropathy: a nationwide prospective study

description: Hereditary transthyretin amyloidosis (ATTRv) is an adult-onset autosomal dominant disease resulting from <i>TTR</i> gene pathogenic variants. ATTRv often presents as a progressive polyneuropathy, and effective ATTRv treatments are available. In this 5 year-long (2017–2021) nationwide prospective study, we systematically analysed the <i>TTR</i> gene in French patients with age &gt;50 years with a progressive idiopathic polyneuropathy. 553 patients (70% males) with a mean age of 70 years were included. A <i>TTR</i> gene pathogenic variant was found in 15 patients (2.7%), including the Val30Met <i>TTR</i> variation in 10 cases. In comparison with patients with no <i>TTR</i> gene pathogenic variants (<i>n</i> = 538), patients with TTR pathogenic variants more often presented with orthostatic hypotension (53 vs. 21%, <i>p</i> = .007), significant weight loss (33 vs 11%, <i>p</i> = .024) and rapidly deteriorating nerve conduction studies (26 vs. 8%, <i>p</i> = .03). ATTRv diagnosis led to amyloid cardiomyopathy diagnosis in 11 cases, ATTRv specific treatment in all cases and identification of 15 additional ATTRv cases among relatives. In this nationwide prospective study, we found ATTRv in 2.7% of patients with age &gt;50 years with a progressive polyneuropathy. These results are highly important for the early identification of patients in need of disease-modifying treatments.
DOI: 10.6084/m9.figshare.24367747.v1
title: Hereditary transthyretin amyloidosis in middle-aged and elderly patients with idiopathic polyneuropathy: a nationwide prospective study

description: Hereditary transthyretin amyloidosis (ATTRv) is an adult-onset autosomal dominant disease resulting from <i>TTR</i> gene pathogenic variants. ATTRv often presents as a progressive polyneuropathy, and effective ATTRv treatments are available. In this 5 year-long (2017–2021) nationwide prospective study, we systematically analysed the <i>TTR</i> gene in French patients with age &gt;50 years with a progressive idiopathic polyneuropathy. 553 patients (70% males) with a mean age of 70 years were included. A <i>TTR</i> gene pathogenic variant was found in 15 patients (2.7%), including the Val30Met <i>TTR</i> variation in 10 cases. In comparison with patients with no <i>TTR</i> gene pathogenic variants (<i>n</i> = 538), patients with TTR pathogenic variants more often presented with orthostatic hypotension (53 vs. 21%, <i>p</i> = .007), significant weight loss (33 vs 11%, <i>p</i> = .024) and rapidly deteriorating nerve conduction studies (26 vs. 8%, <i>p</i> = .03). ATTRv diagnosis led to amyloid cardiomyopathy diagnosis in 11 cases, ATTRv specific treatment in all cases and identification of 15 additional ATTRv cases among relatives. In this nationwide prospective study, we found ATTRv in 2.7% of patients with age &gt;50 years with a progressive polyneuropathy. These results are highly important for the early identification of patients in need of disease-modifying treatments.
DOI: 10.5281/zenodo.10702565
title: Data for the dissertation

description: This dataset contains data on Russian public companies. Financial sector organizations were not included in the sample. It is worth describing separately the data collection process, which was divided into two parts. First of all, qualitative characteristics of corporate governance were searched and systematized. Due to the lack of access to the Bloomberg terminal, it was necessary to collect indicators "manually". Additional difficulties were caused by the fact that there is no regulated corporate governance disclosure form. Thus, companies provided data in different ways. The main sources of information were organizations' annual reports, issuer's quarterly reports, sustainability reports, IFRS financial statements, as well as relevant sections of companies' official websites. At the same time, the listed reports were not always contained on the official websites of the organizations under consideration, therefore the following information resources were used additionally: Interfax, Cbonds and LiveTrader.  At the second stage of data collection we systematized financial indicators taken from IFRS statements of the companies.Corporate governance indicators: BSIZE (size of the Board of Directors), BIND (percentage of independent members of the Board of Directors), DUAL1 (combining the roles of CEO and member of the Board of Directors), DUAL2 (combining the roles of CEO and Chairman of the Management Board), YCEO (CEO irremovability - logarithm of the number of years in the position), COMT (presence of internal audit, remuneration and nomination committees), COMTIND (degree of independence of internal committees), AUDIT (dummy variable equal to 1 if audited by a Big4 company), REMUN1 (percentage of remuneration to members of the Board of Directors as a percentage of total personnel expenses), REMUN2 (percentage of remuneration to members of the Management Board as a percentage of total personnel expenses), REMUN3 (percentage of remuneration to key management personnel as a percentage of total personnel expenses).Financial indicators: ROCE (return on capital employed), SIZE (company size), QTOB (Tobin ratio), TANG (tangible fixed assets to total assets), AGE (company age), NDTS (annual depreciation to total assets), INT (interest rate).The sample includes data from 2012 through 2021. It was important to have reliable information for each indicator required for the analysis. Otherwise, the company was excluded from the sample. The final sample included 32 Russian public companies. All indicators were taken in annual terms due to the specifics of corporate governance factors (with a few exceptions, they change no more than once a year). Thus, 320 observations were available for the analysis.
DOI: 10.5281/zenodo.10702566
title: Data for the dissertation

description: This dataset contains data on Russian public companies. Financial sector organizations were not included in the sample. It is worth describing separately the data collection process, which was divided into two parts. First of all, qualitative characteristics of corporate governance were searched and systematized. Due to the lack of access to the Bloomberg terminal, it was necessary to collect indicators "manually". Additional difficulties were caused by the fact that there is no regulated corporate governance disclosure form. Thus, companies provided data in different ways. The main sources of information were organizations' annual reports, issuer's quarterly reports, sustainability reports, IFRS financial statements, as well as relevant sections of companies' official websites. At the same time, the listed reports were not always contained on the official websites of the organizations under consideration, therefore the following information resources were used additionally: Interfax, Cbonds and LiveTrader.  At the second stage of data collection we systematized financial indicators taken from IFRS statements of the companies.Corporate governance indicators: BSIZE (size of the Board of Directors), BIND (percentage of independent members of the Board of Directors), DUAL1 (combining the roles of CEO and member of the Board of Directors), DUAL2 (combining the roles of CEO and Chairman of the Management Board), YCEO (CEO irremovability - logarithm of the number of years in the position), COMT (presence of internal audit, remuneration and nomination committees), COMTIND (degree of independence of internal committees), AUDIT (dummy variable equal to 1 if audited by a Big4 company), REMUN1 (percentage of remuneration to members of the Board of Directors as a percentage of total personnel expenses), REMUN2 (percentage of remuneration to members of the Management Board as a percentage of total personnel expenses), REMUN3 (percentage of remuneration to key management personnel as a percentage of total personnel expenses).Financial indicators: ROCE (return on capital employed), SIZE (company size), QTOB (Tobin ratio), TANG (tangible fixed assets to total assets), AGE (company age), NDTS (annual depreciation to total assets), INT (interest rate).The sample includes data from 2012 through 2021. It was important to have reliable information for each indicator required for the analysis. Otherwise, the company was excluded from the sample. The final sample included 32 Russian public companies. All indicators were taken in annual terms due to the specifics of corporate governance factors (with a few exceptions, they change no more than once a year). Thus, 320 observations were available for the analysis.
DOI: 10.6084/m9.figshare.16802242
title: Bierhoff et al. 2024. Anthropogenic and climatic drivers of population densities in an African savanna ungulate community

description: Datasets (.csv files) of local population densities and spatial and temporal covariates for five species of ungulates (dik-dik, impala, Grant's gazelle, waterbuck, eland) in the Tarangire Ecosystem of northern Tanzania collected over 7 years.dik = dik-dik; ela = eland;gg = Grant's gazelle; imp = impala; wb = waterbuck.Bierhoff_et_al_2024_R_code: Contains the R code to rerun the entire analysis for Impala and to recreate the figures of the manuscript.table_test_1: A word document into which the tables from the R code can be saved. Note, whenever you rerun the create_table or create_table_for_dataframe function you will overwrite the last table that you created.Bierhoff_et.al_2024_Workspace: The workspace that contains all the necessary dataframes to run the R code, plus all data that are created by running the R script.Bierhoff_el_al_2024: The R project. To run the project click on this and you will open RStudio with the Rscript already loaded.
DOI: 10.6084/m9.figshare.16802242.v1
title: Bierhoff et al. 2024. Anthropogenic and climatic drivers of population densities in an African savanna ungulate community

description: Datasets (.csv files) of local population densities and spatial and temporal covariates for five species of ungulates (dik-dik, impala, Grant's gazelle, waterbuck, eland) in the Tarangire Ecosystem of northern Tanzania collected over 7 years.dik = dik-dik; ela = eland;gg = Grant's gazelle; imp = impala; wb = waterbuck.Bierhoff_et_al_2024_R_code: Contains the R code to rerun the entire analysis for Impala and to recreate the figures of the manuscript.table_test_1: A word document into which the tables from the R code can be saved. Note, whenever you rerun the create_table or create_table_for_dataframe function you will overwrite the last table that you created.Bierhoff_et.al_2024_Workspace: The workspace that contains all the necessary dataframes to run the R code, plus all data that are created by running the R script.Bierhoff_el_al_2024: The R project. To run the project click on this and you will open RStudio with the Rscript already loaded.
DOI: 10.6084/m9.figshare.25285360
title: Banco de dados_Doc.xlsx

description: These data were obtained during field research carried out in the Caxiuanã National Forest on the traditional knowledge of the residents of a local community associated with the natural resources available.
DOI: 10.6084/m9.figshare.25285360.v1
title: Banco de dados_Doc.xlsx

description: These data were obtained during field research carried out in the Caxiuanã National Forest on the traditional knowledge of the residents of a local community associated with the natural resources available.
DOI: 10.5519/qd.llrq2spz
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5776635 records)
DOI: 10.17894/ucph.b6e0d276-665f-479d-aa6a-be12ae5db07c
title: Data for Mirarab et al. 2024 PNAS: "A region of suppressed recombination misleads neoavian phylogenomics"

description: Data repository for the study by Mirarab et al. 2024 in PNAS: "A region of suppressed recombination misleads neoavian phylogenomics"

The study used alignments, gene trees, species tree and time-calibrated species tree from Stiller et al. 2024 (in press in Nature). The main analysis from this study is based on 63430 loci obtained from intergenic regions, maximum likelihood analysis, and coalescent-based species tree estimation, which are included in this repository. 

Files and explanation of content:

* 63430.alignments.tar.gz Alignments in FASTA format for which gene trees were built
* 63430.gene.trees.gz Gene trees in newick format with support as aLRT values.
* 63430.aLRT-0.95-collapsed.gene.trees.gz 63430 gene trees after collapsing branches with aLRT values below 0.95. This file was used as input for ASTRAL analysis.
* 63430.named.gene.trees.gz Gene trees, with 1st column is name of the underlying locus, 2nd column is tree in newick format in order to match gene trees to alignments.
* 63430.aLRT-0.95-collapsed.gene.trees.gz
* 63430.ASTRAL.species.tre Main species tree resulting from ASTRAL analysis.
* 63430.timetree.tre The time calibrated species tree.
DOI: 10.5281/zenodo.10702613
title: arrhamphus_sclerolepis_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.10702614
title: arrhamphus_sclerolepis_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.10702618
title: arrhamphus_sclerolepis_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.10702619
title: arrhamphus_sclerolepis_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.10701019
title: Master thesis_dataset
title: Датасет для магистерской диссертации

description: This dataset is used in Master thesis on topic "The impact of upholding environmental, social and governance principles on the market value of capital-intensive companies". The full dataset consits data on Public american companies included in S&P 500 index, traded on the New York Stock Exchange. There are data on ESG-score and its components (E, S, G), as well as components of Envitonmental pillar score. Additionaly dataset includes financial data, like market capitalization, leverage, ROCE, Capex and etc. The main sources of data are Thomson Reuters Eikon and Bloomberg terminals, along with Form 10-k by SEC. The final sample consists of 52 capital-intensive companies, time horizon: 2012-2021 [520 observations in total].
DOI: 10.5281/zenodo.10701020
title: Master thesis_dataset
title: Датасет для магистерской диссертации

description: This dataset is used in Master thesis on topic "The impact of upholding environmental, social and governance principles on the market value of capital-intensive companies". The full dataset consits data on Public american companies included in S&P 500 index, traded on the New York Stock Exchange. There are data on ESG-score and its components (E, S, G), as well as components of Envitonmental pillar score. Additionaly dataset includes financial data, like market capitalization, leverage, ROCE, Capex and etc. The main sources of data are Thomson Reuters Eikon and Bloomberg terminals, along with Form 10-k by SEC. The final sample consists of 52 capital-intensive companies, time horizon: 2012-2021 [520 observations in total].
DOI: 10.5281/zenodo.10702665
title: Einfluss von Datenintegrität synthetischer Daten auf die Performance von Machine-Learning-Modellen - verwendete Datensätze

description: Verschiedene synthetische Datensätze, die mithilfe programmatisch erzeugter Ursprungsdatensätze und verschiedener Datensynthese-Verfahren erzeugt wurden.

Im Rahmen der Datensynthese wurden folgende Verfahren verwendet:



CTGAN mit festgelegten Einschränkungen

CTGAN ohne Einschränkungen

CV CTGAN


Zusätzlich ist ein Jupyter-Notebook zur Datenanalyse enthalten.
DOI: 10.5281/zenodo.10696413
title: Einfluss von Datenintegrität synthetischer Daten auf die Performance von Machine-Learning-Modellen - verwendete Datensätze

description: Verschiedene synthetische Datensätze, die mithilfe programmatisch erzeugter Ursprungsdatensätze und verschiedener Datensynthese-Verfahren erzeugt wurden.

Im Rahmen der Datensynthese wurden folgende Verfahren verwendet:



CTGAN mit festgelegten Einschränkungen

CTGAN ohne Einschränkungen

CV CTGAN


Zusätzlich ist ein Jupyter-Notebook zur Datenanalyse enthalten.
DOI: 10.5281/zenodo.10696414
title: Einfluss von Datenintegrität synthetischer Daten auf die Performance von Machine-Learning-Modellen - verwendete Datensätze

description: Verschiedene synthetische Datensätze, die mithilfe programmatisch erzeugter Ursprungsdatensätze und verschiedener Datensynthese-Verfahren erzeugt wurden.

Im Rahmen der Datensynthese wurden folgende Verfahren verwendet:



CTGAN mit festgelegten Einschränkungen

CTGAN ohne Einschränkungen

CV CTGAN
DOI: 10.6084/m9.figshare.25027353
title: The Participation Assessment with Recombined Tools-Objective (PART-O): measurement properties of the Norwegian version after traumatic brain injury

description: To translate and evaluate the validity of the Participation Assessment with Recombined Tools-Objective (PART-O) in a Norwegian context. One hundred and twenty persons with TBI with verified intracranial lesions and persistent symptoms lasting more than 2 years, included in a randomized controlled trial, rated their participation using the PART-O at baseline. The PART-O with its three subscales (Productivity, Out and About, and Social Relations) was translated to Norwegian. Descriptive statistics, Cronbach's alpha, Rasch analysis, and correlation analysis were applied. The Rasch analysis indicated a unidimensional construct of PART-O and its subscales (χ2 &lt; 12.69, <i>p</i> &gt; 0.28). The internal consistency was moderate (Cronbach's alpha 0.48–0.52) and there was a need to reduce scaling options for most of the items. The Out and About and Productivity subscales had considerable floor effects. PART-O showed moderate positive correlation to TBI-related quality of life and global functioning. PART-O and its subscales reflect unidimensional aspects of participation. In the present Norwegian TBI population the original scaling of PART-O was too detailed for all subscales. The floor effects and suboptimal targeting between items and subjects participation level of the Out and About subscale is a matter of concern.
DOI: 10.6084/m9.figshare.25027353.v1
title: The Participation Assessment with Recombined Tools-Objective (PART-O): measurement properties of the Norwegian version after traumatic brain injury

description: To translate and evaluate the validity of the Participation Assessment with Recombined Tools-Objective (PART-O) in a Norwegian context. One hundred and twenty persons with TBI with verified intracranial lesions and persistent symptoms lasting more than 2 years, included in a randomized controlled trial, rated their participation using the PART-O at baseline. The PART-O with its three subscales (Productivity, Out and About, and Social Relations) was translated to Norwegian. Descriptive statistics, Cronbach's alpha, Rasch analysis, and correlation analysis were applied. The Rasch analysis indicated a unidimensional construct of PART-O and its subscales (χ2 &lt; 12.69, <i>p</i> &gt; 0.28). The internal consistency was moderate (Cronbach's alpha 0.48–0.52) and there was a need to reduce scaling options for most of the items. The Out and About and Productivity subscales had considerable floor effects. PART-O showed moderate positive correlation to TBI-related quality of life and global functioning. PART-O and its subscales reflect unidimensional aspects of participation. In the present Norwegian TBI population the original scaling of PART-O was too detailed for all subscales. The floor effects and suboptimal targeting between items and subjects participation level of the Out and About subscale is a matter of concern.
DOI: 10.15472/wxm9q2
title: Registros de Stigmacoccidae asociados a bosques de roble de la Red de Jardines Botánicos del Alto Ricaurte, Boyacá Colombia

description: Este conjunto de datos comprende la información reportada en el marco del proyecto UPTC-SGI 3443 “Historia natural y distribución de Stigmacoccidae (Hemiptera) asociada a bosques de roble Quercus humboldtii de la Red de Jardines Botánicos del Alto Ricaurte, Boyacá Colombia”. Durante las salidas de campo entre los meses de marzo-mayo del 2023, se hicieron recolectas directas mediante la búsqueda de insectos escama establecidos en ejemplares de Quercus humboldtii en 6 áreas boscosas diferentes correspondientes a los municipios de Arcabuco, Gachantivá y Villa de Leyva en el departamento de Boyacá, Colombia, con un esfuerzo de muestreo de 3 a 5 horas/hombre.
description: El presente recurso contiene la información asociada a 12 registros de Hemípteros de la familia Stigmacoccidae, determinados bajo Stigmacoccus aff. asper.
DOI: 10.15468/ucvmma
title: Datos de ocurrencia de los géneros Sabethes y Haemagogus (Diptera: Culicidae), vectores de Fiebre Amarilla, presentes en Perú

description: La base aquí publicada consiste en registros de ocurrencias y datos ecológicos complementarios de las especies de culícidos (Diptera: Culicidae) de los géneros Sabethes y Haemagogus distribuidos en Perú, conformando hasta la fecha la base de datos actualizada para el país. Los dos géneros incluyen a las especies reportadas como vectores del virus de la fiebre amarilla selvática en América. El listado de especies de estos dos géneros fue realizada en conjunto por integrantes del Laboratorio de Entomología del Instituto Nacional de Salud (INS), personal de las diversas Direcciones Regionales de Salud (DIRESAS) y Gerencias Regionales de Salud (GERESAS) (Perú) e integrantes del Laboratorio de Insectos Vectores del CEPAVE (CONICET-UNLP) (Argentina) mediante la recopilación de registros en la base de datos de 1931 hasta el 2017. Así mismo se compilaron los registros bibliográficos publicados en revistas científicas, junto a trabajos de campo a cargo del personal de salud del INS realizados luego de reportes de casos humanos e incluso defunciones a causa del virus de la fiebre amarilla. Hasta la actualidad, las especies registradas para Perú de ambos géneros son 9 en total.
DOI: 10.34740/kaggle/dsv/7699548
title: NSUT cutoff for B.Tech admission