cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25573/serc.14346257.v2
title: Dendrometer Data for Macrosystems Transcriptomic Research

description: These data contain the dendrometer band growth of five species of trees at two Forest Global Earth Observatory plots (and environs). ~250 trees at The Smithsonian Environmental Research Institute and Harvard Forest had dendrometer bands installed on them. At each site there were approximately 50 trees of five species: American beech, red maple, black cherry, red oak, and green ash. The data contain the weekly measurements of these trees from 2017-2019 excepting trees that died (a number of ash).
DOI: 10.25573/serc.14346257.v1
title: Dendrometer Data for Macrosystems Transcriptomic Research

description: These data contain the dendrometer band growth of five species of trees at two Forest Global Earth Observatory plots (and environs). ~250 trees at The Smithsonian Environmental Research Institute and Harvard Forest had dendrometer bands installed on them. At each site there were approximately 50 trees of five species: American beech, red maple, black cherry, red oak, and green ash. The data contain the weekly measurements of these trees from 2017-2019 excepting trees that died (a number of ash).
DOI: 10.6084/m9.figshare.20977939
title: Cytotoxic effect of A. mangium extracts

description: Cytotoxic effect of <em>A. mangium </em>extracts
DOI: 10.6084/m9.figshare.20977939.v1
title: Cytotoxic effect of A. mangium extracts

description: Cytotoxic effect of <em>A. mangium </em>extracts
DOI: 10.6084/m9.figshare.20977933
title: Untitled Item

description: Mode of action evaluation of Acacia mangium againts HCV
DOI: 10.6084/m9.figshare.20977933.v1
title: Untitled Item

description: Mode of action evaluation of Acacia mangium againts HCV
DOI: 10.5519/qd.ga863zl0
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (278419 records)
DOI: 10.25934/pr00008408
title: Wellcome Test

description: Requesting data for Wellcome Trust to learn user-facing experience. Discussed with Rebecca Li.
DOI: 10.3886/e179361
title: Data and Code for: Measuring Inflation Expectations in Interwar Britain

description: What caused the recovery from the British Great Depression? A leading explanation - the “expectations channel” - suggests that a shift in expected inflation lowered real interest rates and stimulated consumption and investment. However, few studies have measured, or tested the economic consequences of, inflation expectations. In this paper, we collect high-frequency information from primary and secondary sources to measure expected inflation in the United Kingdom between the wars. A VAR model suggests that inflation expectations were an important source of the early stages of economic recovery in interwar Britain.
DOI: 10.3886/e179361v1
title: Data and Code for: Measuring Inflation Expectations in Interwar Britain

description: What caused the recovery from the British Great Depression? A leading explanation - the “expectations channel” - suggests that a shift in expected inflation lowered real interest rates and stimulated consumption and investment. However, few studies have measured, or tested the economic consequences of, inflation expectations. In this paper, we collect high-frequency information from primary and secondary sources to measure expected inflation in the United Kingdom between the wars. A VAR model suggests that inflation expectations were an important source of the early stages of economic recovery in interwar Britain.
DOI: 10.5281/zenodo.7027914
title: Diffusion MRI quality control reports for the BTC datasets

description: Reports (HTML and pdf) of quality control on diffusion data on brain tumor patients before and after surgery, and controls, published at https://openneuro.org/datasets/ds001226 and https://openneuro.org/datasets/ds002080, based on Bastiani M, Cottaar M, Fitzgibbon SP, Suri S, Alfaro-Almagro F, Sotiropoulos SN, Jbabdi S, Andersson JLR. Automated quality control for within and between studies diffusion MRI data using a non-parametric framework for movement and distortion correction. Neuroimage. 2019 Jan 1;184:801-812. doi: 10.1016/j.neuroimage.2018.09.073. Epub 2018 Sep 26. PMID: 30267859; PMCID: PMC6264528.
DOI: 10.5281/zenodo.7027913
title: Diffusion MRI quality control reports for the BTC datasets

description: Reports (HTML and pdf) of quality control on diffusion data on brain tumor patients before and after surgery, and controls, published at https://openneuro.org/datasets/ds001226 and https://openneuro.org/datasets/ds002080, based on Bastiani M, Cottaar M, Fitzgibbon SP, Suri S, Alfaro-Almagro F, Sotiropoulos SN, Jbabdi S, Andersson JLR. Automated quality control for within and between studies diffusion MRI data using a non-parametric framework for movement and distortion correction. Neuroimage. 2019 Jan 1;184:801-812. doi: 10.1016/j.neuroimage.2018.09.073. Epub 2018 Sep 26. PMID: 30267859; PMCID: PMC6264528.
DOI: 10.5281/zenodo.7019859
title: Vortices and vortex stripes in a dipolar Bose-Einstein condensate

description: Quantized vortices are a prototypical feature of superfluidity that have been observed in multiple quantum gas experiments. But the occurrence of vortices in dipolar quantum gases — a class of ultracold gases characterized by long-range anisotropic interactions — has not been reported yet. Here, we exploit the anisotropic nature of the dipole-dipole interaction of a dysprosium Bose-Einstein condensate to induce angular symmetry breaking in an otherwise cylindrically symmetric pancake-shaped trap. Tilting the magnetic field towards the radial plane deforms the cloud into an ellipsoid, which is then set into rotation. At stirring frequencies approaching the radial trap frequency, we observe the generation of dynamically unstable surface excitations, which cause angular momentum to be pumped into the system through vortices. Under continuous rotation, the vortices arrange into a stripe configuration along the field, in close agreement with numerical simulations.
description: Additional Funding acknowledgements: Austrian Science Fund FWF (AT) : I4426 | Magnetic atoms: from many-body physics to quantum technology German Research Foundation DFG (DE)/ Austrian Science Fund FWF (AT) : FOR 2247/ PI 2790 | From few to many-body physics with dipolar quantum gases
DOI: 10.5281/zenodo.7019858
title: Vortices and vortex stripes in a dipolar Bose-Einstein condensate

description: Quantized vortices are a prototypical feature of superfluidity that have been observed in multiple quantum gas experiments. But the occurrence of vortices in dipolar quantum gases — a class of ultracold gases characterized by long-range anisotropic interactions — has not been reported yet. Here, we exploit the anisotropic nature of the dipole-dipole interaction of a dysprosium Bose-Einstein condensate to induce angular symmetry breaking in an otherwise cylindrically symmetric pancake-shaped trap. Tilting the magnetic field towards the radial plane deforms the cloud into an ellipsoid, which is then set into rotation. At stirring frequencies approaching the radial trap frequency, we observe the generation of dynamically unstable surface excitations, which cause angular momentum to be pumped into the system through vortices. Under continuous rotation, the vortices arrange into a stripe configuration along the field, in close agreement with numerical simulations.
description: Additional Funding acknowledgements: Austrian Science Fund FWF (AT) : I4426 | Magnetic atoms: from many-body physics to quantum technology German Research Foundation DFG (DE)/ Austrian Science Fund FWF (AT) : FOR 2247/ PI 2790 | From few to many-body physics with dipolar quantum gases
DOI: 10.34740/kaggle/dsv/4168146
title: 2021 World Population (updated daily)
DOI: 10.5281/zenodo.7053937
title: Data for: Sticker-and-Spacer Model for Amyloid Beta Condensation and Fibrillation

description: Data for: Sticker-and-Spacer Model for Amyloid Beta Condensation and Fibrillation Preprint of the paper on bioRxiv: https://www.biorxiv.org/content/10.1101/2022.06.04.494837v1
DOI: 10.5281/zenodo.7053936
title: Data for: Sticker-and-Spacer Model for Amyloid Beta Condensation and Fibrillation

description: Data for: Sticker-and-Spacer Model for Amyloid Beta Condensation and Fibrillation Preprint of the paper on bioRxiv: https://www.biorxiv.org/content/10.1101/2022.06.04.494837v1
DOI: 10.5281/zenodo.5702462
title: Non-invasive genomics of respiratory pathogens infecting wild great apes using hybridization capture

description: This dataset complements a manuscript reporting genomic analyses of respiratory pathogens cuasing lethal outbreaks in the wild chimpanzee community living in Tai National Park, Ivory Coast.
DOI: 10.5281/zenodo.5702461
title: Non-invasive genomics of respiratory pathogens infecting wild great apes using hybridization capture

description: This dataset complements a manuscript reporting genomic analyses of respiratory pathogens cuasing lethal outbreaks in the wild chimpanzee community living in Tai National Park, Ivory Coast.
DOI: 10.5066/p9x7rrzi
title: Bed material grain size distributions for surficial samples from Iron Gate, Copco, and J.C. Boyle Reservoirs

description: This product summarizes the collection and analysis of bed material sample grain size distribution collected from the Iron Gate, Copco, and J.C. Boyle Reservoirs located in Northern California and Southern Oregon on the Klamath River. Samples were collected on June 16, 2020 from cores (less than 1m depth) and processed for the full size distribution.
DOI: 10.5281/zenodo.7050772
title: Sentinel-3 SLSTR and MODIS satellite images of Raikoke 2019 and Eyjafjallajökull 2010 eruptions

description: Dataset used for the study presented in the paper "Volcanic cloud detection using Sentinel-3 satellite data by means of neural networks: the Raikoke 2019 eruption test case" (Petracca, I., De Santis, D., Picchiani, M., Corradini, S., Guerrieri, L., Prata, F., Merucci, L., Stelitano, D., Del Frate, F., Salvucci, G., and Schiavon, G.: Volcanic cloud detection using Sentinel-3 satellite data by means of neural networks: the Raikoke 2019 eruption test case, Atmos. Meas. Tech. Discuss. [preprint], https://doi.org/10.5194/amt-2022-173, in review, 2022.).<br>
description: Terra-Aqua/MODIS data are distributed from the Level-1 and Atmosphere Archive & Distribution System (LAADS) Distributed Active Archive Center (DAAC) and they are available at: https://ladsweb.modaps.eosdis.nasa.gov/search/. Sentinel-3/SLSTR data are distributed from the Copernicus Open Access Hub and they are available at: https://scihub.copernicus.eu/dhus/#/home.
description: {"references": ["Petracca, I., De Santis, D., Picchiani, M., Corradini, S., Guerrieri, L., Prata, F., Merucci, L., Stelitano, D., Del Frate, F., Salvucci, G., and Schiavon, G.: Volcanic cloud detection using Sentinel-3 satellite data by means of neural networks: the Raikoke 2019 eruption test case, Atmos. Meas. Tech. Discuss. [preprint], https://doi.org/10.5194/amt-2022-173, in review, 2022."]}
DOI: 10.5281/zenodo.7032172
title: Increasing the thermodynamic driving force of the phosphofructokinase reaction in Clostridium thermocellum

description: Glycolysis is an ancient, widespread, and highly conserved metabolic pathway that converts glucose into pyruvate. In the canonical pathway, the phosphofructokinase (PFK) reaction plays an important role in controlling flux through the pathway. <em>Clostridium thermocellum</em> has an atypical glycolysis and uses pyrophosphate (PPi) instead of ATP as the phosphate donor for the PFK reaction. The reduced thermodynamic driving force of the PPi-PFK reaction shifts the entire pathway closer to thermodynamic equilibrium, which has been predicted to limit product titers. In this work, we replace the PPi-PFK reaction with an ATP-PFK reaction. We demonstrate that the local changes are consistent with thermodynamic predictions: the ratio of fructose 1,6-bisphosphate to fructose-6-phosphate increases, and the reverse flux through the reaction (determined by <sup>13</sup>C labeling) decreases. The final titer and distribution of fermentation products, however, do not change, demonstrating that the thermodynamic constraints of the PPi-PFK reaction are not the sole factor limiting product titer.
DOI: 10.5281/zenodo.7032171
title: Increasing the thermodynamic driving force of the phosphofructokinase reaction in Clostridium thermocellum

description: Glycolysis is an ancient, widespread, and highly conserved metabolic pathway that converts glucose into pyruvate. In the canonical pathway, the phosphofructokinase (PFK) reaction plays an important role in controlling flux through the pathway. <em>Clostridium thermocellum</em> has an atypical glycolysis and uses pyrophosphate (PPi) instead of ATP as the phosphate donor for the PFK reaction. The reduced thermodynamic driving force of the PPi-PFK reaction shifts the entire pathway closer to thermodynamic equilibrium, which has been predicted to limit product titers. In this work, we replace the PPi-PFK reaction with an ATP-PFK reaction. We demonstrate that the local changes are consistent with thermodynamic predictions: the ratio of fructose 1,6-bisphosphate to fructose-6-phosphate increases, and the reverse flux through the reaction (determined by <sup>13</sup>C labeling) decreases. The final titer and distribution of fermentation products, however, do not change, demonstrating that the thermodynamic constraints of the PPi-PFK reaction are not the sole factor limiting product titer.
DOI: 10.6084/m9.figshare.20978206
title: Kappa角给编辑的表格.xlsx

description: <strong>Higher-order aberrations and visual quality after SMILE surgery with intraoperative angle kappa adjustments between small and large Kappa patients: a two-year follow-up</strong>
DOI: 10.6084/m9.figshare.20978206.v1
title: Kappa角给编辑的表格.xlsx

description: <strong>Higher-order aberrations and visual quality after SMILE surgery with intraoperative angle kappa adjustments between small and large Kappa patients: a two-year follow-up</strong>
DOI: 10.6084/m9.figshare.20978206.v2
title: Kappa角给编辑的表格.xlsx

description: <strong>Higher-order aberrations and visual quality after SMILE surgery with intraoperative angle kappa adjustments between small and large Kappa patients: a two-year follow-up</strong>
DOI: 10.6084/m9.figshare.20310003
title: Absolute_GeneCopyNumbers_qPCR

description: Raw copy numbers from qPCR for<em> sul1, sul2, intI1</em> and 16S rRNA genes. Sampling dates and sites are indicated, samples were taken from surface waters in the Holtemme river, Germany.
DOI: 10.6084/m9.figshare.20979511
title: UCL dataset

description: This dataset contains the attendance figures for UCL games from 2009-10 to 2018-19, plus sveral other match level variables.
DOI: 10.5281/zenodo.6573092
title: Reproduction package for the paper "Investigating the detection rates and inference of gravitational-wave and radio emission from black hole-neutron star mergers"

description: This is a basic reproduction package for the paper "Investigating the detection rates and inference of gravitational-wave and radio emission from black hole neutron star mergers".
description: This research was supported by Vici research program 'ARGO' with project number 639.043.815, financed by the Dutch Research Council (NWO). JVL further acknowledges funding through CORTEX (NWA.1160.18.316), under the research programme NWA-ORC, financed by NWO; and from the European Research Council under the European Union's Seventh Framework Programme (FP/2007-2013)/ERC Grant Agreement No. 617199 ('ALERT').
DOI: 10.5281/zenodo.6573093
title: Reproduction package for the paper "Investigating the detection rates and inference of gravitational-wave and radio emission from black hole-neutron star mergers"

description: This is a basic reproduction package for the paper "Investigating the detection rates and inference of gravitational-wave and radio emission from black hole neutron star mergers".
description: This research was supported by Vici research program 'ARGO' with project number 639.043.815, financed by the Dutch Research Council (NWO). JVL further acknowledges funding through CORTEX (NWA.1160.18.316), under the research programme NWA-ORC, financed by NWO; and from the European Research Council under the European Union's Seventh Framework Programme (FP/2007-2013)/ERC Grant Agreement No. 617199 ('ALERT').
DOI: 10.6084/m9.figshare.20979649
title: telfairia_occidentalis_zanfona_1.fasta.gz

description: ........
DOI: 10.6084/m9.figshare.20979649.v1
title: telfairia_occidentalis_zanfona_1.fasta.gz

description: ........
DOI: 10.6084/m9.figshare.20979547
title: Diverse clinical and genetic characteristics of six cases of inherited epidermolysis bullosa (IEB)

description: <strong>Background: </strong>Inherited epidermolysis bullosa (IEB) represents a group of rare genetic dermatoses comprising a wide spectrum of phenotypes ranging from severe cutaneous and extracutaneous involvement to mild cutaneous fragility. Pathogenic variants have been identified in at least 20 genes responsible for IEB. <strong>Materials and methods</strong>: In this study, 6 cases of epidermolysis bullosa were recruited and subjected to a combination of clinical and genetic analysis. The family history of each case was surveyed. Whole exome sequencing was utilized to identify the causative variation. <strong>Results</strong>: The 6 patients enrolled manifested with typical EB symptoms. WES detected diagnostic variations of the <em>COL7A1</em> or <em>DST</em> gene in all cases. A total of 10 variants were identified and verified. <strong>Conclusion</strong>: The findings in our study further expanded the mutation spectrum of IEB, provided evidence for the genetic counseling to affected families, and also highlighted the complexity of IEB pathogenesis.
DOI: 10.6084/m9.figshare.20979547.v1
title: Diverse clinical and genetic characteristics of six cases of inherited epidermolysis bullosa (IEB)

description: <strong>Background: </strong>Inherited epidermolysis bullosa (IEB) represents a group of rare genetic dermatoses comprising a wide spectrum of phenotypes ranging from severe cutaneous and extracutaneous involvement to mild cutaneous fragility. Pathogenic variants have been identified in at least 20 genes responsible for IEB. <strong>Materials and methods</strong>: In this study, 6 cases of epidermolysis bullosa were recruited and subjected to a combination of clinical and genetic analysis. The family history of each case was surveyed. Whole exome sequencing was utilized to identify the causative variation. <strong>Results</strong>: The 6 patients enrolled manifested with typical EB symptoms. WES detected diagnostic variations of the <em>COL7A1</em> or <em>DST</em> gene in all cases. A total of 10 variants were identified and verified. <strong>Conclusion</strong>: The findings in our study further expanded the mutation spectrum of IEB, provided evidence for the genetic counseling to affected families, and also highlighted the complexity of IEB pathogenesis.
DOI: 10.34740/kaggle/dsv/4168352
title: COVID Vaccination in World (updated daily)
DOI: 10.6084/m9.figshare.20455950.v2
title: sleep-diary-sleepmeter-infant

description: Annotated daily sleep diary for an infant boy, from 1.5 months to ... <br> The annotations are non exhaustive and not all sleep sessions were recorded, especially in the first 2 weeks. <br> Each file includes the whole history, hence there is no need to concatenate, just pick the latest one.
DOI: 10.6073/pasta/c3ef07e6ed81c1fc33e9bc20aff07093
title: Above ground plant biomass in a mesic acidic tussock tundra experimental site from 1982 to 2015 Arctic LTER, Toolik Lake, Alaska.

description: Above ground plant biomass and leaf area were measured in a moist acidic tussock tundra experimental site. The plots were set up in 1981 and have been harvested in periodical (See Shaver and Chapin Ecological Monographs, 61(1), 1991 pp.1-31. Mack, et al, Nature 2004 431:440-443) This file contains the biomass numbers for each harvested quadrat and per cent carbon and nitrogen summaries for harvests through 2000. Leaf area data is presented in other data files (see http://ecosystems.mbl.edu/arc).
DOI: 10.6073/pasta/81cabf5e01842aa1464dee3dcf6f2860
title: Daily climate summary: Meterologic Measurements at Cedar Creek Natural History Area

description: Meteorological measurements include air temperature, precipitation, wind speed and direction, soil temperature, and relative humidity. These measurements are taken on an hourly basis.
DOI: 10.6073/pasta/80b1c1e006a213114e9597d83e865727
title: LTER Meteorological Stations at the Kellogg Biological Station, Hickory Corners, MI (1988 to 2018)
DOI: 10.6073/pasta/18dad6748af96c98b72cea3436bf7fe4
title: Annual mean estimates of aboveground net primary production (NPP) at 15 sites at Jornada Basin LTER, 1989-ongoing

description: This package contains values of mean annual aboveground net primary production (NPP, in grams per square meter per year) at 15 NPP study sites on Jornada Experimental Range (JER) and Chihuahuan Desert Rangeland Research Center (CDRRC) lands. Sites were selected to represent the 5 major ecosystem types in the Chihuahuan Desert (upland grasslands, playa grasslands, mesquite-dominated shrublands, creosotebush-dominated shrublands, tarbush-dominated shrublands). For each ecosystem type, three sites were selected to represent the range in variability in production and plant diversity; thus the locations are not replicates. At each site, a 1 hectare area was fenced in 1988 and a grid of 49 (48 at one playa location) 1m x 1m replicate quadrats was laid out when sampling began in 1989. In fall, winter, and spring periods aboveground biomass was calculated for each species and quadrat at each NPP site. These calculations rely on two data sources: 1) non-destructive horizontal cover and vertical height measurements of individual plants, or plant parts, within each quadrat, and 2) linear regression coefficients for each plant species derived from off-quadrat cover, height, and harvested biomass measurements. NPP is then calculated as the positive biomass increment between seasons. The annual totals in this dataset are derived by summing mean site NPP values for winter (October - February), spring (February - May), and fall (May - October) increments for a single calendar year. Data collection is ongoing with new annual NPP values calculated after the conclusion of each growing season. Attention: 1) Calculated values in this data package have changed over time as the methodology for estimating biomass has changed. 2) Relating long-term NPP in this package with long-term precipitation is problematic given the importance of wet and dry periods and their effect on production in these ecosystems. See Notes 1 & 2 in the methods element for further details.
DOI: 10.6073/pasta/9aa53de93c12b115a0402986b50ee0cf
title: PAB01 Aboveground Net Primary Productivity of Tallgrass Prairie Based on Accumulated Plant Biomass on Core LTER Watersheds (001d, 004b, 020b)

description: Data set contains estimates of end-of-season standing crop biomass (grams per square meter) of live graminoids, forbs, woody plants, and previous year's dead vegetation for 2 soil types (shallow and deep) on three core LTER watersheds representing three fire frequency treatments. Twenty quadrats (0.1 square meters) are harvested for each soil/treatment type. NOTE: Early (April) and mid-season (July) biomass was collected from 1983-1988, and these data are available by request.