cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/vzbrzvyrn4
title: The TDHF code Sky3D version 1.2

description: The Sky3D code has been widely used to describe nuclear ground states, collective vibrational excitations, and heavy-ion collisions. The approach is based on Skyrme forces or related energy density functionals. The static and dynamic equations are solved on a three-dimensional grid, and pairing is been implemented in the BCS approximation. This updated version of the code aims to facilitate the calculation of nuclear strength functions in the regime of linear response theory, while retaining all existing functionality and use cases. The strength functions are benchmarked against available RPA codes, and the user has the freedom of choice when selecting the nature of external excitation (from monopole to hexadecapole and more). Some utility programs are also provided that calculate the strength function from the time-dependent output of the dynamic calculations of the Sky3D code.
DOI: 10.6084/m9.figshare.28296527.v1
title: IB2d <i>Tomopteris</i> Example

description: Simulation Source Files for the IB2d Example of a <i>Tomopteris</i> Swimming. Uses the MATLAB version of IB2d. This is a lower resolution example than what's in the manuscript. It that takes ~5 hours to run.------------------------------------------------------------- <b>README (1/28/2025)</b>Simulation by N.A. BattistaCite: N.A. Battista, Exploring the swimming performance and the physical mechanisms of Tomopteris locomotion. Bioinspir. Biomim. (2025) DOI 10.1088/1748-3190/adad26-------------------------------------------------------------<b>Grid Parameters</b>: smaller grid size and lower resolution to decrease runtime for this example.Domain: [Lx,Ly] = [6,2]Resolution: [Nx,Ny] = [768,256]-------------------------------------------------------------<b>Model Parameters:</b>Parapodia Length: 0.114*BLPaddling Amplitude: 50 degrees (total angle swept)Undulation Amplitude: 0.030*BL-------------------------------------------------------------<b>Data Stored </b>(in .vtk format)<br>Lagrangian PointsLagrangian Spring ConnectionsFluid Vorticity<i>* Can specify other data in input2d file *</i>
DOI: 10.6084/m9.figshare.28945988.v1
title: O aumento da xenofobia no Brasil: rompendo fronteiras por meio do direito antidiscriminatório e dos estudos pós-coloniais

description: Este artigo tem como objetivo analisar o crescimento da xenofobia no Brasil por meio de um estudo das teorias antidiscriminatórias e da literatura pós-colonial. Partiu-se do pressuposto de que o racismo e a desumanização foram mecanismos criados com a colonização dos territórios latino-americanos e com a imposição de uma hierarquia que tomou a raça das pessoas como condição. Séculos após a independência das colônias, ainda há um certo colonialismo interno que moldou a epistemologia jurídica brasileira e, consequentemente, todo o seu aparato é o legado de práticas que segregam e discriminam as pessoas, seja por raça, nacionalidade, gênero, religião, orientação sexual etc. Especificamente neste estudo, analisouse como a ascensão de discursos conservadores, patriarcais e colonialistas dificulta a inserção respeitosa e harmoniosa de imigrantes e refugiados na sociedade, na política e na economia. Nesse sentido, o projeto de descolonização do direito se mostra bem-sucedido em romper as “fronteiras” que estruturam a discriminação dentro das instituições e, acima de tudo, dentro do direito. O artigo utilizou-se de uma revisão bibliográfica e de um estudo quantitativo para analisar o crescimento dos imigrantes/refugiados no Brasil e, consequentemente, do aumento da xenofobia. Foi conduzido um ensaio de como a literatura observa o fenômeno da xenofobia e foram traçados paralelos para fomentar essa discussão com os estudos pós-coloniais e com a teoria do direito antidiscriminatório.
DOI: 10.6084/m9.figshare.12924230.v3
title: A crustacean annotated transcriptome (CAT) database

description: BackgroundDecapods are an order of crustaceans which includes shrimps, crabs, lobsters and crayfish. They occur worldwide and are of great scientific interest as well as being of ecological and economic importance in fisheries and aquaculture. However, our knowledge of their biology mainly comes from the group which is most closely related to crustaceans – insects. Here we produce a de novo transcriptome database, crustacean annotated transcriptome (CAT) database, spanning multiple tissues and the life stages of seven crustaceans.DescriptionA total of 71 transcriptome assemblies from six decapod species and a stomatopod species, including the coral shrimp <i>Stenopus hispidus</i>, the cherry shrimp <i>Neocaridina davidi</i>, the redclaw crayfish <i>Cherax quadricarinatus</i>, the spiny lobster <i>Panulirus ornatus</i>, the red king crab <i>Paralithodes camtschaticus</i>, the coconut crab <i>Birgus latro</i>, and the zebra mantis shrimp <i>Lysiosquillina maculata</i>, were generated. Differential gene expression analyses within species were generated as a reference and included in a graphical user interface database at http://cat.sls.cuhk.edu.hk/. Users can carry out gene name searches and also access gene sequences based on a sequence query using the BLAST search function.ConclusionsThe data generated and deposited in this database offers a valuable resource for the further study of these crustaceans, as well as being of use in aquaculture development.
DOI: 10.6084/m9.figshare.24570397.v3
title: TRMM at 1km-Resolution: High-resolution precipitation data in a data-scarce Indus Basin reconstructed through data-driven spatial downscaling and remote sensing

description: Understanding the pixel-scale hydrology and the spatiotemporal distribution of regional precipitation requires high precision and high-resolution precipitation data. Satellite-based precipitation products have coarse spatial resolutions (~10 km–75 km), rendering them incapable of translating high-resolution precipitation variability induced by dynamic interactions between climatic forcing, ground cover, and altitude variations. We investigated the performance of a data-driven spatial downscaling procedure to generate fine-scale (1 km × 1 km) gridded precipitation estimates from the coarser resolution of TRMM data (~25 km) in the Indus Basin. The mixed geo-graphically weighted regression (MGWR) and random forest (RF) models were utilized to spatially downscale the TRMM precipitation data using high-resolution (1 km × 1 km) explanatory variables. Results indicated that the MGWR model performed better on fit and accuracy than the RF model in predicting the precipitation. Annual TRMM estimates after downscaling and calibration not only translate the spatial heterogeneity of precipitation but also improved the agreement with rain gauge observations with a reduction in RMSE and bias of ~88 mm/year and 27%, respectively. In general, the higher reduction in bias values after downscaling and calibration procedures was noted across the downstream low elevation zones (e.g., zone 1 correspond to elevation changes from 0 to 500 m). The low performance of precipitation products across elevation zone 3 (&gt;1000 m) might be associated with the fact that satellite observations at high-altitude regions with glacier coverage are most likely subjected to higher uncertainties. The high-resolution gridded precipitation data generated by the MGWR-based proposed framework can facilitate the characterization of distributed hydrology in the Indus Basin. The method may have strong adaptability in other catchments of the world, with varying climates and topography conditions.
DOI: 10.17632/44vr5xssc6
title: - CosmoLattice - A modern code for lattice simulations of scalar and gauge field dynamics in an expanding universe

description: This paper describes CosmoLattice, a modern package for lattice simulations of the dynamics of interacting scalar and gauge fields in an expanding universe. CosmoLattice incorporates a series of features that makes it very versatile and powerful: i) it is written in C++ fully exploiting the object oriented programming paradigm, with a modular structure and a clear separation between the physics and the technical details, ii) it is MPI-based and uses a discrete Fourier transform parallelized in multiple spatial dimensions, which makes it specially appropriate for probing scenarios with well-separated scales, running very high resolution simulations, or simply very long ones, iii) it introduces its own symbolic language, defining field variables and operations over them, so that one can introduce differential equations and operators in a manner as close as possible to the continuum, iv) it includes a library of numerical algorithms, ranging from O(δt^2) to O(δt^10) methods, suitable for simulating global and gauge theories in an expanding grid, including the case of ‘self-consistent’ expansion sourced by the fields themselves. Relevant observables are provided for each algorithm (e.g. energy densities, field spectra, lattice snapshots) and we note that, remarkably, all our algorithms for gauge theories (Abelian or non-Abelian) always respect the Gauss constraint to machine precision.
DOI: 10.17632/83j25gddrn
title: Data for: Enzymatic hydrolysis of lignin by ligninolytic enzymes and GC-MS analysis of the hydrolyzed lignin products

description: Standard curve of alkali lignin and GC-MS data
DOI: 10.6084/m9.figshare.11830089.v1
title: Gene database of Schizosaccharomyces pombe ASM294v2

description: <i>Schizosacchromyces pombe </i>is a eukaryotic fission yeast that has been used extensively as a model organism for cell cycle research. Also used in traditional brewing, <i>S. pombe</i> is a rod-shaped microbe measuring 3-4 µm across and 7-14 µm long. This work sought to present the genomic information of <i>S. pombe</i> in an accessible Excel based gene database that would find use in a variety of molecular cloning and gene editing studies. Specifically, the Genbank genome file of chromosome I, II, III and mitochondrion chromosome of <i>S. pombe</i> ASM294v2 was parsed by an in-house MATLAB genome analysis software to yield a database comprising gene name, gene function and gene sequence. Overall, the presented gene database should help guide molecular cloning and gene editing experiments, especially in designing spacer sequence for targeting specific genes in generating loss-of-function mutants crucial for functional genomics studies.<br><br>
DOI: 10.6084/m9.figshare.12859982.v1
title: Msa.genomic.gff

description: A chromosome-scale genome assembly of a diploid alfalfa, the progenitor of autotetraploid alfalfa
DOI: 10.6084/m9.figshare.24153018.v1
title: models(cnn&mobilenet)

description: cnn models and mobilenet models with different perfomance and defaults
DOI: 10.6084/m9.figshare.25648563.v5
title: <b>Varying phylogenetic signal in susceptibility to four bacterial pathogens across species of Drosophilidae</b>

description: Bacterial host shifts, where bacterial pathogens jump into and establish infection in a new host species, are an important source of emerging infectious diseases. Here, we use four bacterial pathogens to infect a panel of 36 species of fruit fly that shared a common ancestor ~50 million years ago. We found large amounts of variation in susceptibility across host species to these bacterial pathogens. This variation is explained by the host phylogeny to varying degrees, with hosts clustering into clades with distinct levels of susceptibility. However, the magnitude of the effect varies between the four bacterial pathogens. For three out of the four pathogens tested mortality was correlated with bacterial load, suggesting it is a result of bacterial proliferation in the host. This has important implications for our understanding of the emergence of bacterial pathogens, and to date there are few large-scale experimental studies of bacterial host shifts.
DOI: 10.6084/m9.figshare.28597535.v1
title: Table S1. Concentrations of Heavy Metals in Sediment core Samples from Mangrove Forests Inside and Outside Zhanjiang Bay, South China.xls

description: Sediment samples were collected in December 2022 from mangrove areas along both sides of the Donghai Island embankment, with nine sampling stations established (see Figure 1). Sediment cores were obtained using PVC plastic tubes, yielding nine cores ranging from 10 to 30 cm in length. Of these, four cores were collected within Zhanjiang Bay (DHD-Z-1 to DHD-Z-4), and five were obtained outside the bay (DW-Z-1 to DW-Z-5). Each core was sectioned at 5 cm intervals, resulting in a total of 42 sediment samples (see Table S1).
DOI: 10.6084/m9.figshare.4981145.v1
title: ReadMe for DCE-MRI data set

description: Supplemental information about the headings of the columns in the datasets
DOI: 10.17605/osf.io/kwr6n
title: Quality Criteria for AI-based Research Assistants (AIRAs)

description: Dataset of a study submitted as poster presentation, to be presented at ISI 2025, 18. Internationales Symposium für Informationswissenschaft, Chemnitz Germany, 18. – 20. März 2025, https://isi2025.informationswissenschaft.org/
DOI: 10.17632/crk9tmnmb7
title: Using quantitative systems pharmacology modeling to optimize combination therapy of anti-PD-L1 checkpoint inhibitor and T cell engager 

description: This repository contains the QSP platform for combination therapy of anti-PD-L1 checkpoint inhibitor and T cell engager developed by the Popel Systems Biology Laboratory. 
https://popellab.johnshopkins.edu/.
DOI: 10.17632/tbzv5hpvw5
title: DCIS Atlas code

description: Code used for data preprocessing and analyses in the paper 'DCIS genomic signatures define biology and clinical outcome: 
Human Tumor Atlas Network (HTAN) analysis of TBCRC 038 and RAHBT cohorts' by Strand et al., 2022.
DOI: 10.21942/uva.20368053.v1
title: Figure data of https://doi.org/10.1103/PhysRevLett.128.103401

description: Figure data of https://doi.org/10.1103/PhysRevLett.128.103401
DOI: 10.24385/lincoln.26394643.v2
title: Open question responses VR

description: Presence, immersion, and personality predict a change in mood and the social experience of a virtual reality Western art music concert
  
Previous research has found that digital engagement with Western art music concerts does not elicit a social experience to the extent that live presentations achieve. Virtual reality (VR) is increasingly being used in various sectors to mitigate limitations since it can create a more immersive and active experience for users. While the technology has been used extensively by the games industry, and received significant attention from ludologists, it has not permeated into the music industry in the same way, and certainly not the Western art music market. We sought to explore the predictors of the social experience of virtual reality presentations of a Western art music concert.
We used a pragmatic, mixed methods approach to collect the data. 50 participants were presented a monoscopic 360° VR recording of a string quintet concert. Social Experience of a Concert Scales (SECS) captured the social experience of participants, and the PANAVA to measure change in mood, in addition to the multimodal presence scale (MPS), and Big Five Personality Inventory. Supplementary open questions were included to more generally explore the participants’ experience of engaging with the VR concert. 
The results suggest that openness to new experiences predicts an increase in positive activation and a decrease in negative activation, and extraversion predicts an increase in valence. Social and physical presence predict the extent to which the concert provided a social experience, based on the MPS and SECS. Many of our findings on the effect of personality on the social experience have replicated the results of previous research, what is novel about our findings is that they replicate these relationships in a virtual setting.
DOI: 10.6084/m9.figshare.20348949.v1
title: Rhizosphere microbiome of field-grown rice

description: Raw sequences of the V4 hypervariable region of the 16S rRNA gene of bacteria and archaea inhabiting the rice rhizosphere at different developpemental stages under field conditions.
DOI: 10.17632/5hpkf8v7bg
title: Handwritten Arabic Numerals (0-9) Image Dataset

description: This dataset contains images of handwritten Arabic numerals ranging from 0 to 9. It comprises a total of 9350 samples, with 935 images for each numeral class. The images were collected from various individuals to ensure diversity in handwriting styles.

Key Features:

Classes: 10 (Arabic numerals 0-9)
Total Samples: 9350
Samples per Class: 935
Image Format: Grayscale
Image Size: 28x28 pixels (adjust if different)
Data Collection and Labeling:

The dataset was created by collecting handwritten numerals from participants with different handwriting styles.
Each image was manually labeled to ensure accurate and consistent annotations.
The data collection and labeling process was meticulously carried out by one of the authors.
Usage:

This dataset is suitable for training and testing machine learning models for handwritten digit recognition. It can be used in various applications such as optical character recognition (OCR) systems, pattern recognition, and other related fields.

Contributors:

Author 1: Conducted the data collection and labeling process, ensuring accurate and consistent annotations for all samples.
Author 2: Handled the data labelling process.
Acknowledgments:

We would like to thank all the participants who contributed their handwritten numerals for this dataset.

License:

CC BY NC 3.0
You are free to adapt, copy or redistribute the material, providing you attribute appropriately and do not use the material for commercial purposes.
DOI: 10.6084/m9.figshare.24486954.v1
title: GO terms from A distinct neurogenomic response to a tradeoff between social challenge and opportunity in male sticklebacks (<i>Gasterosteus aculeatus</i>)

description: Significantly enriched GO terms identified from DEG lists from each treatment and brain region
DOI: 10.6084/m9.figshare.27136125.v1
title: Hydrological Variables.xlsx

description: Hydrological Dataset
DOI: 10.6084/m9.figshare.823546.v1
title: IGES and .stl file of a rat brain

description: <strong>Rat's brain mechanical model</strong> For building the realistic 3D model, Magnetic Resonance Imaging (MRI) data was obtained from an anaesthetised male Wistar rat (250g ) fixed onto a MRI compatible stereotactic frame. The data consisted of 240 cross-sectional slices 0,22mm thick and 320x320 voxels with 0,3mm resolution (Philips Achieva 3 Tesla (T), Neuroradiology UKSH Lübeck). The brain contour was subsequently segmented using Simpleware’s (Exeter, UK) employing the built-in region growing tool and careful manual correction. The segmentation mask was then converted to a surface mesh. The physical rat brain replica was done with various software. At this state a .stl surface mesh file existed and for standard boolean operations in ProEngineer & Creo Elements Student Version 2011 (PTC, Needham, MA 02494, USA) software a solid was prerequisite. With FreeCAD, an open source, under General Public License (GPL), CAD software, was used to create a shape from a mesh and then converted to a solid with the same volume like the mesh. For moulds however, the original volume of a rat brain is difficult to use. In particular areas as the olvactorium or the abrupt transition from the Telencephalon to the Metencephalon. At those points an area smoothing was done to reduce the anatomical indentations. Otherwise the physical rat brain cannot be extracted out of the mould without damage. At this time a solid volume of the brain was generated. For boolean subtraction, a second block, 1,5 times the size of the rat brain, was needed. The rat brain and the block were nestable assembled and the brain was subtracted from the block. The hollowed block was subdivided into two halves and each one fitted with either a tongue or a groove connection. Additionally a hole of 2mm diameter through the block to the olfactory region, for liquid intake, was cut.
DOI: 10.17632/bxd3k2yntp
title: Survey of Microplastics in Laguna de Bay 2018

description: A dataset of 890 microplastics collected from the surface water of Laguna de Bay, Philippines in August and September 2018. Microplastics were collected in 3 sites of the bay: 1) Brgy. Napindan, Taguig City, Metro Manila; 2) Brgy. San Isidro, Tanay, Rizal; and 3.) Brgy. Sampiruhan, Calamba Laguna. The dataset contains the the ID of each microplastic fragment, collection month, site, sampling point, length (in micrometers), roundness score, and CIE color coordinates (L*, a*, and b*). The survey was done to assess the properties (length, roundness and color) of the microplastics in Laguna de Bay.
DOI: 10.17632/jc6mjmf29s
title: Research on E-Commerce as per Scopus Database as at October 2020

description: This is a dataset that has been obtained from the Scopus database as of 7 October 2020. This dataset is gathered based on the following search query: TITLE ( "e-commerce" OR "electronic commerce" OR "e commerce" OR "ecommerce" ). It can be used to map the research on e-commerce using bibliometrics analysis from 1992 until 2020. There are 9 parts of this dataset and it has been prepared in CSV and RIS format. The data in CSV format can be opened and analysed using applications such as Microsoft Excel. It also can be opened using VOSviewer for constructing and visualizing bibliometric networks. While the data in RIS format can be opened using any reference manager software such as EndNote or Mendeley Desktop and Harzing's Publish or Perish to be further analysed.
DOI: 10.6084/m9.figshare.10025303.v1
title: Critical current characterisation of InnoST 1G HTS superconducting wire

description: Detailed measurements of the critical current of a commercial 1G HTS BSCCO wire as a function of temperature, magnetic field, and field angle, performed at the Robinson Research Institute of Victoria University of Wellington.
DOI: 10.6084/m9.figshare.12027861.v1
title: Factors associated with sleep disorders in university students

description: The objective was to investigate sleep disorders and associated sociodemographic and behavioral factors. A census of university students was carried out. Questions extracted from the Munich Chronotype Questionnaire investigated: insufficient sleep duration (&lt; 6 hours/day for &lt; 65 years and &lt; 5 hours/day for other ages), long latency (&gt; 30 minutes), low self-rated sleep quality, nocturnal awakenings (involuntary, in the middle of the night), and daytime sleepiness (difficulty concentrating). Independent variables included sociodemographic and behavioral characteristics. Adjusted analyses were performed with Poisson regression. Of the 1,865 students, 32% exhibited insufficient sleep on class days, 8.2% insufficient sleep on weekends, 18.6% long latency on class days, 17.2% long latency on weekends, 30% low self-rated sleep quality, 12.7% nocturnal awakenings, and 32.2% daytime sleepiness. Higher alcohol consumption was associated with insufficient sleep duration and long latency on class days, low quality sleep, awakenings, and daytime sleepiness. Smoking was associated with insufficient sleep duration on weekends, awakenings, and low-quality sleep. Black and brown skin color were associated with insufficient sleep duration on class days, low-quality sleep, and awakenings. Morning classes were associated with insufficient sleep and daytime sleepiness. Female gender was associated with low-quality sleep and awakenings. The most frequent sleep disorders were insufficient sleep on class days, low self-rated quality of sleep, and daytime sleepiness. Alcohol consumption and smoking and black and brown skin color were the principal factors associated with sleep disorders.
DOI: 10.6084/m9.figshare.6265511.v1
title: Patient14

description: Female Patient with 217 slice of pulmonary embolism CT-Angiography.