cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.dc4b0t6
title: Data from: Individual and population differences shape species interactions and natural selection

description: Trait variation is central to our understanding of species interactions,
 and trait variation arising within species is increasingly recognized as
 an important component of community ecology. Ecologists generally consider
 intraspecific variation either among or within populations, yet these
 differences can interact to create patterns of species interactions. These
 differences can also affect species interactions by altering processes
 occurring at distinct scales. Specifically, intraspecific variation may
 shape species interactions simply by shifting a population’s position
 along a trait-function map, or by shifting the relationship between traits
 and their ecological function. I test these ideas by manipulating within-
 and among-population intraspecific variation in wild populations of a
 gall-forming insect, before quantifying species interactions and
 phenotypic selection. Within- and among-population differences in gall
 size interact to affect attack rates by an enemy community, but
 among-population differences were far more consequential. Intraspecific
 differences shaped species interactions both by shifting the position of
 populations along the trait-function map, and by altering the relationship
 between traits and their function, with ultimate consequences for patterns
 of natural selection. I suggest that intraspecific variation can affect
 communities and natural selection by acting through individual- and
 population-level mechanisms.
description: intramenvar_data_for_dryada sheet containing information on gall sizes in different treatments, and the fates of each gall.
DOI: 10.5061/dryad.n07742q
title: Data from: What determines the distinct morphology of species with a particular ecology? The roles of many-to-one mapping and trade-offs in the evolution of frog ecomorphology and performance

description: Organisms in a specific environment often have distinct morphology, but
 the factors that affect this fit are unclear when multiple morphological
 traits affect performance in multiple behaviors. Does the realized
 morphology of a species reflect a compromise in performance among
 behaviors (i.e. trade-offs)? Or does many-to-one mapping result in
 morphological distinctness without compromising performance across
 behaviors? The importance of these principles in organismal design has
 rarely been compared at the macroevolutionary scale. Here, I study 191
 species of frogs around the world that inhabit different microhabitats,
 using models of phenotypic evolution to examine how form-function
 relationships may explain the fit between ecology and morphology. I found
 three key results. First, despite being distinct in leg morphology,
 ecomorphs were similar in jumping performance. Second, ecomorphs that
 regularly swim showed higher swimming performance, which paralleled the
 higher leg muscle mass in these taxa. Third, many-to-one mapping of form
 onto function occurred at all but the highest levels of both jumping and
 swimming performance. The seemingly contradictory first two results were
 explained by the third: when some behaviors are found across all species
 while others are restricted to a subset, many-to-one mapping allows
 species with distinct ecologies to have distinct body forms that reflect
 their specialized behaviors while maintaining similar performance in more
 general, shared behaviors.
description: Complete intraspecific
 phenotypic dataAll the phenotypic
 (microhabitat states, morphological, and performance) data used in the
 paper. File includes citation to the original source of the data; please
 see these original sources for citations to the microhabitat states. File
 includes a data tab and a metadata tab that defines each variable and its
 units, if applicable.Moen.AmNat.rawdata.xlsxComplete intraspecific phenotypic data (generalized file format)The same data as the Excel file, but in a format (CSV) that can be read by any program. Please note that because CSV files cannot have multiple tabs, this file does not have metadata.Moen.AmNat.rawdata.csv44-species phylogeny used for performance analysesThis phylogeny was estimated by Moen et al. 2013 (cited within the paper). It was used again here for analyses examining functional performance and those linking morphology and performance.SuppFileS1_44sp.tre191-species phylogeny used in analyses of morphologyA phylogeny pruned from Pyron (2014; see citation within paper associated with these data). In the current paper, this phylogeny was used for analyses of morphology alone (i.e. without performance).SuppFileS1_191sp.tre
DOI: 10.5061/dryad.c538kq7
title: Data from: Genetic and environmental effects on the scaling of metabolic rate with body size

description: Metabolic rate (MR) often scales with body mass (BM) following a power
 function of the form MR = aBMb, where b is the allometric exponent (i.e.
 slope on a log-log scale). The variational properties of b have been
 debated, but very few studies have tested for genetic variance in b, and
 none have tested for a genotype-by-environment (GxE) interaction in b.
 Consequently, the short-term evolutionary potentials of both b and its
 phenotypic plasticity remain unknown. Using 10 clones of a population of
 Daphnia magna, we estimated the genetic variance in b and assessed whether
 a GxE interaction affected b. We measured metabolic rate on juveniles of
 different sizes reared and measured at three temperatures (17, 22 and
 28&[deg]C). Overall, b decreased with increasing temperature. We
 found no evidence of genetic variance in b at any temperature, and thus no
 GxE interaction in b. However, we found a significant GxE interaction in
 size-specific metabolic rate. Using simulations, we show how this GxE
 interaction can generate genetic variation in the ontogenetic allometric
 slopes of animals experiencing directional changes in temperature during
 growth. This suggests that b can evolve despite having limited genetic
 variation at constant temperatures.
description: Fossen_JEXBIO2019_Raw_dataData on metabolic rate (oxygen consumption) from a laboratory experiment used to quantify genetic and temperature effects on the scaling of metabolic rate with body size.
DOI: 10.5061/dryad.45qc0rc
title: Data from: Multidimensional ecological analyses demonstrate how interactions between functional traits shape fitness and life history strategies

description: 1.Traditionally, trait‐based studies have explored single‐trait‐fitness
 relationships. However, this approximation in the study of fitness
 components is often too simplistic, given that fitness is determined by
 the interplay of multiple traits, which could even lead to multiple
 functional strategies with comparable fitness (i.e. alternative designs).
 2.Here we suggest that an analytical framework using boosted regression
 trees (BRT) can prove more informative to test hypotheses on trait
 combinations compared to standard linear models. We use two published
 datasets for comparisons: a botanical garden dataset with 557 plant
 species (Herben et al., 2012) and an observational dataset with 83 plant
 species (Adler et al., 2014). 3.Using the observational dataset, we found
 that BRTs predict the role of traits on the relative importance of
 survival, growth, and reproduction for population growth rate better than
 linear models do. Moreover, we split species cultivated in different
 habitats within the botanical garden and observed that seed and vegetative
 reproduction depended on trait combinations in most habitats. Our analyses
 suggest that, while not all traits impact fitness components to the same
 degree, it is crucial to consider traits that represent different
 ecological dimensions. 4.Synthesis:The analysis of trait combinations, and
 corresponding alternative designs via BRTs, represent a promising approach
 for understanding and managing functional changes in vegetation
 composition through measurement of suites of relatively easily measurable
 traits.
description: READMEThis file explains all
 of the variables in each of the datasets that accompany: Pistón N et al.,
 (2019). Multidimensional ecological analyses demonstrate how interactions
 between functional traits shape fitness and life history
 strategies.Observational
 datasetData were obtained from
 Adler et al. (2014), which used information from the COMPADRE Plant Matrix
 Database (Salguero-Gómez et al., 2015) and TRY (Kattge et al.,
 2011).Observational_Dataset.csvBotanicalGarden_DatasetData were obtained from Herben et al. (2012), which used information from LEDA (Kleyer et al., 2008), CLO-PLA3 (Klimešová et al., 2017) and Herben et al. (2017).
DOI: 10.5281/zenodo.12802816
title: Benchmarking DFT-based excited-state methods for intermolecular charge-transfer excitations

description: Intermolecular charge-transfer (ICT) excitation energies and density-based descriptors (DCT) computed over a variety of small molecular dimer complexes, computed with DFT-based excited-state electronic-structure methods (TD-DFT and OO-DFT with multiple exchange-correlation functionals and basis sets), as well as original reference data computed with equation-of-motion Coupled-Cluster theory (RDA dataset) and from other publications (large dataset).The data used to produce Figures 3,  4, and 5, as well as Tables 1, 2, and 3 in our publication available athttps://doi.org/10.1039/D4CP01866DVersion 2 incorporates a correction (see erratum to the article) to the reference excitation energies in the RDA dataset. Due to an error in our ouput parsing routine, the effect of the triples correction was omitted from these results, resulting in a rather constant red shift of the corresponding reference excitation energies. Incorporating the triples correction correspondingly leads to a blue shift of the excitation energies compared to the published data which is now integrated in the revised dataset.
DOI: 10.5281/zenodo.18388464
title: Benchmarking DFT-based excited-state methods for intermolecular charge-transfer excitations

description: Intermolecular charge-transfer (ICT) excitation energies and density-based descriptors (DCT) computed over a variety of small molecular dimer complexes, computed with DFT-based excited-state electronic-structure methods (TD-DFT and OO-DFT with multiple exchange-correlation functionals and basis sets), as well as original reference data computed with equation-of-motion Coupled-Cluster theory (RDA dataset) and from other publications (large dataset).The data used to produce Figures 3,  4, and 5, as well as Tables 1, 2, and 3 in our publication available athttps://doi.org/10.1039/D4CP01866DVersion 2 incorporates a correction (see erratum to the article) to the reference excitation energies in the RDA dataset. Due to an error in our ouput parsing routine, the effect of the triples correction was omitted from these results, resulting in a rather constant red shift of the corresponding reference excitation energies. Incorporating the triples correction correspondingly leads to a blue shift of the excitation energies compared to the published data which is now integrated in the revised dataset.
DOI: 10.5061/dryad.39jf355
title: Data from: Single-molecule imaging and quantification of the immune-variant adhesin VAR2CSA on knobs of Plasmodium falciparum-infected erythrocytes

description: PfEMP1 (erythrocyte membrane protein 1) adhesins play a pivotal role in
 the pathophysiology of falciparum malaria, by mediating sequestration of
 Plasmodium falciparum-infected erythrocytes in the microvasculature.
 PfEMP1 variants are expressed by var genes and are presented on membrane
 elevations, termed knobs. However, the organization of PfEMP1 on knobs is
 largely unclear. Here, we use super-resolution microscopy and genetically
 altered parasites expressing a modified var2csa gene in which the coding
 sequence of the photoactivatable mEOS2 was inserted to determine the
 number and distribution of PfEMP1 on single knobs. The data were verified
 by quantitative fluorescence-activated cell sorting analysis and
 immuno-electron microscopy together with stereology methods. We show that
 knobs contain 3.3 ± 1.7 and 4.3 ± 2.5 PfEMP1 molecules, predominantly
 placed on the knob tip, in parasitized erythrocytes containing wild type
 and sickle haemoglobin, respectively. The ramifications of our findings
 for cytoadhesion and immune evasion are discussed.
description: PfEMP1 counting original
 data fileThis file contains the
 original data underpinning the work published by Sanchez et al. (2019) in
 Communications Biology. The file is organized according to the figures and
 graphs published in the aforementioned publications
DOI: 10.5061/dryad.m5d8f45
title: Data from: Invasive shrubs modify rodent activity timing, revealing a behavioral rule governing diel activity

description: Animals adjust the timing of their activity to maximize benefits, such as
 access to resources, and minimize costs, such as exposure to predators.
 Despite many examples of invasive plants changing animal behavior, the
 potential for invasive plants to alter the timing of animal activity
 remains unexplored. In eastern North America, invasive shrubs might have
 particularly strong effects on animal activity timing during spring and
 fall, when many invasive shrubs retain their leaves long after native
 species’ leaves senesce. We experimentally removed an invasive shrub
 (buckthorn, Rhamnus cathartica) and monitored the activity timing of a
 ubiquitous small-mammal species (white-footed mouse, Peromyscus leucopus)
 in spring, summer, and fall. We captured nearly three times as many P.
 leucopus in plots invaded by R. cathartica compared to plots with R.
 cathartica removed, and P. leucopus were captured two hours earlier in
 invaded plots. Regardless of invasion treatment, P. leucopus appear to
 follow a common rule to set activity timing: P. leucopus were only active
 below a threshold of ground-level moonlight illuminance (0.038 lux). Diel
 and monthly lunar cycles play an important role in regulating small-mammal
 activity, but our data suggest that decreased light penetration dampens
 the influence of moonlight illuminance in habitats invaded by R.
 cathartica, allowing P. leucopus to remain active throughout the night. By
 changing the temporal niche of ubiquitous native animals, invasive shrubs
 may have unappreciated effects on many ecological interactions, including
 processes that alter community diversity and affect human health.
description: peromyscus
 photosObservations of
 Peromyscus leucopus activity timing from motion-activated cameras. Cameras
 were deployed for 6 one-week sessions in spring, summer, and fall of 2017,
 in plots invaded by buckthorn (Rhamnus cathartica) or plots with buckthorn
 removed.peromyscus trap
 entryTrap-entry times for
 Peromyscus leucopus collected over one 4-night trapping session during
 spring 2017, and two 4-night trapping sessions during fall 2017. Mice were
 trapped in plots invaded by buckthorn (Rhamnus cathartica) and plots with
 buckthorn removed.
DOI: 10.5061/dryad.3p4s413
title: Data from: Natural selection favors a larger eye in response to increased competition in natural populations of a vertebrate

description: 1.Eye size varies notably across taxa. Much work suggests that this
 variation is driven by contrasting ecological selective pressures.
 However, evaluations of the relationship between ecological factors and
 shifts in eye size have largely occurred at the macroevolutionary scale.
 Experimental tests in nature are conspicuously absent. 2.Trinidadian
 killifish, Rivulus hartii, are found across fish communities that differ
 in predation intensity. We recently showed that increased predation is
 associated with the evolution of a smaller eye. Here, we test how
 divergent predatory regimes alter the trajectory of eye size evolution
 using comparative mark‐recapture experiments in multiple streams. 3.We
 found that increases in eye size are associated with enhanced survival,
 irrespective of predation intensity. More importantly, eye size is
 associated with enhanced growth in communities that lack predators, while
 this trend is absent when predators are present. 4.Such results argue that
 increased competition for food in sites that lack predators is the key
 driver of eye size evolution.
description: Eye_Growth_Dataset_FuncEcolData associated with growth analysesEye_Survival_Dataset_FuncEcolData associated with survival analyses
DOI: 10.18715/ipgp.2025.m7oic39m
title: Swarm Alpha ASM-V data version 06XX

description: This dataset consists of version 06XX 1 Hz (bandwidth 0-0.4 Hz) self-calibrated experimental vector data acquired by the ASM magnetometer on board satellite Alpha of the ESA Swarm mission. These data are produced by IPGP when the ASM instrument is set in its "vector mode", which is the mode in which this instrument has been operated for the most part of the mission, except at times (typically during one week sessions per month) when the instruments are set in their alternative "scalar burst mode". The dataset is organized in annual zipped folders (one per year since 2013), each folder containing all available daily files for the year of interest. The dataset also comes with a SW-ASMV-DD-IPGP-0007_ASMV_Experimental_L1B_Product_Definition Revision 1A file, providing details of the data definition and format of the daily files.
DOI: 10.5061/dryad.t7d934c
title: Data from: Long jumpers with and without a transtibial amputation have different 3D center of mass and joint take-off step kinematics

description: Long jumpers with below the knee amputation (BKA) have achieved remarkable
 performances, yet the underlying biomechanics resulting in these jump
 distances are unknown. We measured 3D motion and used multi-segment
 modelling to quantify and compare the center of mass (COM) and joint
 kinematics of three long jumpers with BKA and seven non-amputee long
 jumpers during the take-off step of the long jump. Despite having the same
 jump distances, athletes with BKA, who used their affected leg for the
 take-off step, had lower sagittal plane hip and knee joint range of motion
 and positioned their affected leg more laterally relative to the COM
 compared to non-amputee athletes. Athletes with BKA had a longer
 compression phase and greater downward movement of their COM, suggesting
 that their affected leg (lever) was less rigid compared to the biological
 leg of non-amputees. Thus, athletes with BKA used a different kinematic
 mechanism to redirect horizontal to vertical velocity compared to
 non-amputee athletes. The specific movement patterns of athletes with BKA
 during the take-off step were constrained by the mechanical properties of
 the prosthesis. These results provide a basis for coaches and athletes to
 develop training protocols that improve performance and inform the design
 of future prostheses.
description: Long_Jump_Model_OutputModel Output Files used for parameter calculation.RSOS_Model_Output.zip
DOI: 10.5061/dryad.4h16331
title: Data from: Sharing the burden: on the division of parental care and vocalizations during incubation

description: In species with biparental care, individuals only have to pay the costs
 for their own parental investment, while the contribution of their partner
 comes for free. Each parent hence benefits if its partner works harder,
 creating an evolutionary conflict of interest. How parents resolve this
 conflict and how they achieve the optimal division of parental tasks often
 remains elusive. In this study, we investigated whether lesser
 black-backed gulls (Larus fuscus) divide parental care during incubation
 equally and whether this correlates with the extent of vocalizations
 between pair-members during incubation. We then investigated whether pairs
 showing more evenly distributed incubation behavior had a higher
 reproductive success. To this end, we recorded incubation behavior and
 vocalizations for 24h time periods. Subsequently, we experimentally
 increased or decreased brood sizes in order to manipulate parental effort,
 and followed offspring development from hatching till fledging. While
 incubation bouts were, on average, slightly longer in females, patterns
 varied strongly between pairs, ranging from primarily female incubation
 over equal sex contributions to male-biased incubation. Pairs contributing
 more equally to incubation vocalized more during nest relief, and had a
 higher reproductive output when brood sizes were experimentally increased.
 Thus, vocalizations and a more equal division of parental care during
 incubation may facilitate higher levels of care during the nestling
 period, as suggested by a greater reproductive success when facing high
 brood demand, or they indicate pair quality.
description: video
 observationsraw behavioral data from
 video-observations of incubating lesser black backed
 gullsvideo_data_manuscript_dryad_raw.xlsxoffspring developmentmeasurements of lesser black backed gull offspring body mass used to calculate body condition indexchicks_data_manuscript_dryad.xlsx
DOI: 10.5061/dryad.7cq1st8
title: Data from: Gone with the rain: negative effects of rainfall on male mating success in a nest-building arachnid

description: In nest-building species, offspring survival and reproductive success of
 parental individuals are strongly influenced by nest quality. Thus,
 quantifying the influence of abiotic conditions on nest integrity is
 important to predict the effects of weather variability on the fitness of
 parental individuals. Here we investigated how rainfall affects nest
 integrity and how nest integrity influences males’ attractiveness and nest
 tenure. Our study species was the harvestman Quindina limbata, in which
 males build mud nests on fallen logs and protect the eggs against
 predators and fungi. Our dataset comprises 12 months of regular
 inspections of 149 nests in a Costa Rican rainforest. We found that almost
 50% of the nests were destroyed by rainfall. The drag force caused by
 rainfall running on the fallen log surface negatively affected nest
 integrity. Fungi cover on nests was influenced by an interaction between
 rainfall and nest position on the fallen log. Irrespective of their body
 size, males in nests with high integrity received more eggs than males in
 nests with low integrity. Fungi cover did not influence the number of eggs
 received by the males. Finally, nest integrity and fungi cover did not
 affect nest tenure, but males that did not receive eggs for a long time
 tended to abandon their nests. Considering that intense rainfall occurs
 all year long in tropical forests, males should build their nests in
 protected sites that preserve nest structure. Protected sites may keep
 nest structure better preserved, improve offspring survival, attract more
 females, and increase males’ reproductive success.
description: gone with the rain
 dataThe zip file contains
 three txt files with the data used in the analyses of nest wall integrity,
 nest floor integrity, fungi cover, egg gain and nest
 tenure.