cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25739/bjd1-6k38
title: Spinti_river_fragmentation_data_2022

description: This dataset contains river fragmentation and regulation time series in the the contiguous United States. The database includes processed and analyzed river fragments from the 1800s to 2010. Data was assembled from publicly available spatial datasets.
DOI: 10.5281/zenodo.7789657
title: Datasets for SPARKS (Splicing Profile Analysis using RBP KD/KO Signatures)

description: Dataset for SPARKS, including library and examples
DOI: 10.5281/zenodo.7789656
title: Datasets for SPARKS (Splicing Profile Analysis using RBP KD/KO Signatures)

description: Dataset for SPARKS, including library and examples
DOI: 10.22003/xfel.eu-data-003397-00
title: Ultrafast non-local relaxation of bio-relevant metal ions in water
DOI: 10.22003/xfel.eu-data-003373-00
title: Enhanced resonant elastic scattering from inner-shell population-inverted Cu atoms probed by superfluorescent x-ray pulses
DOI: 10.25494/p6vk53
title: Development of a Statewide Estuary Monitoring Program to Evaluate California’s Estuarine Marine Protected Areas

description: California’s estuaries are influenced by watershed land use, coastal infrastructure, water resource management, and other stressors. To address the monitoring needs of Estuary Marine Protected Areas (EMPA), the California Ocean Protection Council (OPC) funded development of a monitoring framework and program to provide data and information necessary to answer critical management questions about both MPA and non-MPA estuaries statewide. The integrated estuarine monitoring framework, developed by a statewide technical team (working with a Management Advisory Committee), provides sampling design, standard protocols, and data management tools to facilitate collection, integration, and dissemination of biotic and abiotic data in a consistent and accessible manner. A monitoring manual and associated website provide details and documentation of the scientific basis and the tools necessary to implement the monitoring program. The technical team has also produced a data report to illustrate how data collected through the monitoring program can be used to answer scientific and management questions about estuary health and stressors, and how that information can inform management decisions.
DOI: 10.6073/pasta/3169668ed4727b41f8fbec1c0ebd46cb
title: Lignin, litter, and soil carbon decomposition from soil samples collected from 20 National Ecological Observatory Network (NEON) sites in 2019

description: These data support the findings of a manuscript by Huang et al. (2023) published in Nature Communications (doi pending). We used incubations of soil and stable isotope measurements to measure lignin, litter, and SOC decomposition over an 18-month lab incubation and assessed their relationships with geochemical, microbial, N-related and climatic factors across 156 mineral soils collected from 20 National Ecological Observatory Network (NEON) sites, which span broad biophysical gradients (climate, soil, and vegetation type) across North America. The soils were collected in 2019. Lignin decomposition and biogeochemical variables were also measured in an approximately 12-month field incubation.
DOI: 10.6084/m9.figshare.22439254.v1
title: PV working layouts

description: PV working layouts for 2019-2022
DOI: 10.21985/n2-9r77-p344
title: Brazil bus transportation data
title: Forecasting the evolution of fast-changing transportation networks using machine learning
title: US air transportation data
DOI: 10.6084/m9.figshare.3761562.v2542
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5281/zenodo.7789984
title: Molecular Absorption Cross Sections for H2-He Dominated Substellar Atmospheres (using exocross and ExoMol line lists as of ~2021)

description: This data set consists of molecular absorption cross sections for the following molecules assuming collisional broadening by a H2-He dominated atmosphere: H2O, CH4, NH3, PH3, CO2, CO, HCN, H2S, H2, FeH, SiO CrH, TiH, MgH, CaH, TiO, VO The cross section grid has a constant spectral resolution of R~20,000 from 0.3 microns to 50 microns. It ranges in temperature from 50-5000 K and in pressure from 10^6 to 3000 bars. When decompressed, the full set of files takes up 22 GB. These molecular absorption cross sections were calculated using the exocross code created and distributed by the ExoMol collaboration. A description of the procedure I followed for their calculation is included in the appendix of Lacy & Burrows 2023. A description of the file format and brief summary of the line lists used can be found in README.txt. Please cite these line lists as well as Lacy & Burrows 2023 if you make use of these cross sections in your work. (See https://www.exomol.com/bibliography/)
DOI: 10.5281/zenodo.7789985
title: Molecular Absorption Cross Sections for H2-He Dominated Substellar Atmospheres (using exocross and ExoMol line lists as of ~2021)

description: This data set consists of molecular absorption cross sections for the following molecules assuming collisional broadening by a H2-He dominated atmosphere: H2O, CH4, NH3, PH3, CO2, CO, HCN, H2S, H2, FeH, SiO CrH, TiH, MgH, CaH, TiO, VO The cross section grid has a constant spectral resolution of R~20,000 from 0.3 microns to 50 microns. It ranges in temperature from 50-5000 K and in pressure from 10^6 to 3000 bars. When decompressed, the full set of files takes up 22 GB. These molecular absorption cross sections were calculated using the exocross code created and distributed by the ExoMol collaboration. A description of the procedure I followed for their calculation is included in the appendix of Lacy & Burrows 2023. A description of the file format and brief summary of the line lists used can be found in README.txt. Please cite these line lists as well as Lacy & Burrows 2023 if you make use of these cross sections in your work. (See https://www.exomol.com/bibliography/)
DOI: 10.5517/ccdc.csd.cc2d25g4
title: CCDC 2206625: Experimental Crystal Structure Determination

description: Related Article: Meysam Azizzade, Parviz Rashidi Ranjbar, Akram Sajadi|2023|Org.Lett.|25|1823|doi:10.1021/acs.orglett.3c00244
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d56c5
title: CCDC 2209536: Experimental Crystal Structure Determination

description: Related Article: Meng-Fan Li, Ling-Qi Chen, Jia-Yin Wang, Man-Su Tu, Wen-Juan Hao, Bo Jiang|2023|J.Org.Chem.|88|3615|doi:10.1021/acs.joc.2c02804
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d5d66
title: CCDC 2209717: Experimental Crystal Structure Determination

description: Related Article: Deep Kumar Das, Rangarajan Bakthavatsalam, Venkatesha R. Hathwar, Raghavaiah Pallepogu, Janardan Kundu|2023|J.Mater.Chem.C|11|3855|doi:10.1039/D2TC04361K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7789967
title: Screening the maize rhizobiome for consortia that improve Azospirillum brasilense root colonization and plant growth outcomes

description: Data corresponds to results from: <em>Barua N, Clouse KM, Ruiz Diaz DA, Wagner MR, Platt TG and Hansen RR (2023) Screening the</em> <em>maize rhizobiome for consortia that improve Azospirillum brasilense root colonization and plant growth outcomes. Front. Sustain. Food Syst. 7:1106528. doi: 10.3389/fsufs.2023.1106528</em>
DOI: 10.5281/zenodo.7789966
title: Screening the maize rhizobiome for consortia that improve Azospirillum brasilense root colonization and plant growth outcomes

description: Data corresponds to results from: <em>Barua N, Clouse KM, Ruiz Diaz DA, Wagner MR, Platt TG and Hansen RR (2023) Screening the</em> <em>maize rhizobiome for consortia that improve Azospirillum brasilense root colonization and plant growth outcomes. Front. Sustain. Food Syst. 7:1106528. doi: 10.3389/fsufs.2023.1106528</em>
DOI: 10.5517/ccdc.csd.cc2dbq1j
title: CCDC 2214827: Experimental Crystal Structure Determination

description: Related Article: Martin Nieger|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dbqn4
title: CCDC 2214846: Experimental Crystal Structure Determination

description: Related Article: Martin Nieger|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dbqyf
title: CCDC 2214855: Experimental Crystal Structure Determination

description: Related Article: Martin Nieger|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dbsm5
title: CCDC 2214907: Experimental Crystal Structure Determination

description: Related Article: Martin Nieger|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dbv6t
title: CCDC 2214956: Experimental Crystal Structure Determination

description: Related Article: Martin Nieger|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.7281/t1/y2pvkd/1n7fw3
title: yellow_archive.zip

description: Select output for Yellow Ocean simulation, average of final 100 years.
DOI: 10.7281/t1/y2pvkd/rtmza2
title: green_archive.zip

description: Select output for Green Ocean simulation, average of final 100 years.
DOI: 10.7281/t1/y2pvkd/vwp8ie
title: heat_anomaly_time_series.zip

description: Ocean heat content anomaly for the 300-year simulations, 0-300m and 0-700m. Data corresponds to Figure 1 of publication.
DOI: 10.7281/t1/y2pvkd/vzrxe7
title: readme.txt

description: README for files in this repository
DOI: 10.7281/t1/y2pvkd/zktakk
title: manuscript_figs.zip

description: jnl script compatible with NOAA Ferret visualization software to re-create manuscript figures.
DOI: 10.5281/zenodo.7780499
title: Hello, world! VIVA+ blunt impact simulations

description: LS-Dyna simulations files (animations[d3plots] and binary outputs [binouts]) from the publication introducing VIVA+ Human Body Models, https://www.frontiersin.org/articles/10.3389/fbioe.2022.918904/full
DOI: 10.5281/zenodo.7780498
title: Hello, world! VIVA+ blunt impact simulations

description: LS-Dyna simulations files (animations[d3plots] and binary outputs [binouts]) from the publication introducing VIVA+ Human Body Models, https://www.frontiersin.org/articles/10.3389/fbioe.2022.918904/full
DOI: 10.5281/zenodo.6188091
title: Recurrent, founder and hypomorphic variants contribute to shaping the genetic landscape of Joubert syndrome

description: <strong>Introduction: </strong>This database includes the raw data linked with the paper “Recurrent, founder and hypomorphic variants contribute to the genetic landscape of Joubert syndrome”. In this paper we reported eleven recurrent variants in seven distinct JS genes occurring in our large European JS cohort, including a previously unreported variant in KIAA0586 (c.1006C&gt;T). <strong>Methods</strong>: We evaluated the frequencies of these variants in our cohort of &gt;500 European JS patients and compared them with controls (from three large Italian non-JS cohorts and from the gnomAD database), and with an independent cohort of about 600 JS probands from the United States. <strong>Results: </strong>All variants were markedly enriched in the European JS cohort compared to all controls. When comparing allele frequencies in the two JS cohorts, the Ashkenazi Jewish founder variant (TMEM216 c.218G&gt;T) was significantly enriched in American JS compared to European JS patients, while the MKS1 c.1476T&gt;G variant was about ten times more frequent among European JS. Frequencies of all remaining variants were comparable in the two cohorts. Genotyping of several microsatellite markers across the gene loci in carriers of seven variants identified four novel founder haplotypes. Of note, MKS1 c.1476T&gt;G was consistently detected in compound heterozygosity with deleterious variants in JS patients, while it was found in homozygosity in an unaffected parent. Functional studies on fibroblasts from this healthy carrier and her affected son showed a similarly reduced percentage of ciliated cells compared to unaffected controls, but much shorter cilia in the patient than in the unaffected homozygous parent, consistent with a hypomorphic effect.
description: Funding: Ricerca Corrente 2021 and Ricerca Finalizzata, Ministry of Health (Italy); Italian Ministry of University and Research; Telethon
DOI: 10.5281/zenodo.6188090
title: Recurrent, founder and hypomorphic variants contribute to shaping the genetic landscape of Joubert syndrome

description: <strong>Introduction: </strong>This database includes the raw data linked with the paper “Recurrent, founder and hypomorphic variants contribute to the genetic landscape of Joubert syndrome”. In this paper we reported eleven recurrent variants in seven distinct JS genes occurring in our large European JS cohort, including a previously unreported variant in KIAA0586 (c.1006C&gt;T). <strong>Methods</strong>: We evaluated the frequencies of these variants in our cohort of &gt;500 European JS patients and compared them with controls (from three large Italian non-JS cohorts and from the gnomAD database), and with an independent cohort of about 600 JS probands from the United States. <strong>Results: </strong>All variants were markedly enriched in the European JS cohort compared to all controls. When comparing allele frequencies in the two JS cohorts, the Ashkenazi Jewish founder variant (TMEM216 c.218G&gt;T) was significantly enriched in American JS compared to European JS patients, while the MKS1 c.1476T&gt;G variant was about ten times more frequent among European JS. Frequencies of all remaining variants were comparable in the two cohorts. Genotyping of several microsatellite markers across the gene loci in carriers of seven variants identified four novel founder haplotypes. Of note, MKS1 c.1476T&gt;G was consistently detected in compound heterozygosity with deleterious variants in JS patients, while it was found in homozygosity in an unaffected parent. Functional studies on fibroblasts from this healthy carrier and her affected son showed a similarly reduced percentage of ciliated cells compared to unaffected controls, but much shorter cilia in the patient than in the unaffected homozygous parent, consistent with a hypomorphic effect.
description: Funding: Ricerca Corrente 2021 and Ricerca Finalizzata, Ministry of Health (Italy); Italian Ministry of University and Research; Telethon
DOI: 10.5281/zenodo.7790050
title: DeSQL: Interactive Debugging of SQL in Data-Intensive Scalable Computing

description: Anonymous Anonymous Anonymous
DOI: 10.5281/zenodo.7790049
title: DeSQL: Interactive Debugging of SQL in Data-Intensive Scalable Computing

description: Anonymous Anonymous Anonymous
DOI: 10.23641/asha.22096523
title: Influence of electric mismatches on electric–acoustic stimulation outcomes (Dillon et al., 2023)

description: <strong>Purpose:</strong> Cochlear implant (CI) recipients with hearing preservation experience significant improvements in speech recognition with electric–acoustic stimulation (EAS) as compared to with a CI alone, although outcomes across EAS users vary. The individual differences in performance may be due in part to default mapping procedures, which result in electric frequency-to-place mismatches for the majority of EAS users. This study assessed the influence of electric mismatches on the early speech recognition for EAS users. <strong>Method: </strong>Twenty-one participants were randomized at EAS activation to listen exclusively with a default or place-based map. For both groups, the unaided thresholds determined the acoustic cutoff frequency (i.e., &gt; 65 dB HL). For default maps, the electric filter frequencies were assigned to avoid spectral gaps in frequency information but created varying magnitudes of mismatches. For place-based maps, the electric filter frequencies were assigned to avoid frequency-to-place mismatches. Recognition of consonant–nucleus–consonant words and vowels was assessed at activation and 1, 3, and 6 months postactivation. <strong>Results: </strong>For participants with default maps, electric mismatch at 1500 Hz ranged from 2 to −12.0 semitones (<em>Mdn</em> = −5 semitones). Poorer performance was observed for those with larger magnitudes of electric mismatch. This effect was observed through 6 months of EAS listening experience. <strong>Conclusions:</strong> The present sample of EAS users experienced better initial performance when electric mismatches were small or eliminated. These data suggest the utility of methods that reduce electric mismatches, such as place-based mapping procedures. Investigation is ongoing to determine whether these differences persist with long-term EAS use. <strong>Supplemental Material S1. </strong>Descriptive statistics of the vowel recognition and consonant–nucleus–consonant (CNC) word recognition (percent correct) for participants with default maps and participants with place-based maps at each interval. Dillon, M. T., Canfarotta, M. W., Buss, E., Rooth, M. A., Richter, M. E., Overton, A. B., Roth, N. E., Dillon, S. M., Raymond, J. H., Young, A., Pearson, A. C., Davis, A. G., Dedmon, M. M., Brown, K. D., & O'Connell, B. P. (2023). Influence of electric frequency-to-place mismatches on the early speech recognition outcomes for electric–acoustic stimulation users. <em>American Journal of Audiology, 32</em>(1), 251–260. https://doi.org/10.1044/2022_AJA-21-00254
DOI: 10.5281/zenodo.7790076
title: Dataset-Sh

description: Dataset-Sh
DOI: 10.5281/zenodo.7790075
title: Dataset-Sh

description: Dataset-Sh
DOI: 10.6084/m9.figshare.22191286
title: Analyzed interview transcript

description: This project provides the interview script which has analyzed and categorized to five emotional geography framework.
DOI: 10.6084/m9.figshare.22191286.v3
title: Analyzed interview transcript

description: This project provides the interview script which has analyzed and categorized to five emotional geography framework.
DOI: 10.6084/m9.figshare.22447441.v1
title: Original Leaf Scans

description: At the seventh true leaf stage, three leaves per plant (leaves two, three, and four) were collected and scanned using an EPSON perfection V550 Photo scanner (model J252B) at 360 pixels/inch for a total of 2,687 leaves across all accessions and replications. Each scan included up to three leaves. Additional leaf outlines from Snogerup et al. (1990) were also included to test how their wild relative samples from 1990 compared with our collection.
DOI: 10.23641/asha.21669611
title: Day-to-day variability of clinical dysphagia in cerebral palsy (Malandraki et al., 2023)

description: <strong>Purpose:</strong> We aimed to examine the day-to-day variability of feeding and swallowing performance and mealtime duration in school-age self-feeding children with spastic cerebral palsy (SCP) across 15 days. <strong>Method:</strong> Thirteen children with SCP (ages 5;10 [years;months]–17;6) participated. Children were divided into unilateral (UCP, <em>n</em> = 6) and bilateral (BCP, <em>n</em> = 7) SCP groups. Feeding/swallowing assessments using the Dysphagia Disorder Survey (DDS) were conducted and total mealtime durations (TMDs) were calculated for all days. DDS Part 1 (factors related to feeding) and DDS Part 2 (signs of oropharyngeal difficulties) components were rated. Mixed-effects models were used to compare group means and estimate between- and within-subject variances in each group. Likelihood ratio tests were used to determine best covariance structure and compare variance types across groups. <strong>Results:</strong> Within-subject variance for all three variables, DDS Part 1, 2, and TMD, across days was larger in the BCP group than the UCP group (Part 1: <em>p</em> = .0036, Part 2: <em>p</em> = .0002, and TMD: <em>p</em> = .0005) and the between-subject variance was larger in the BCP group for DDS Part 2 (<em>p</em> = .0362). The UCP group presented with lower (milder) DDS scores (Part 1: <em>p</em> = .0160; Part 2: <em>p</em> = .0141) and shorter TMD (<em>p</em> = .0077) than the BCP group across days. Furthermore, both groups exhibited greater variability in DDS Part 2 than 1 (<em>p</em> &lt; .0001). <strong>Conclusion:</strong> These preliminary results emphasize the need to account for day-to-day variability when evaluating swallowing especially in children with BCP and provide preliminary ranges of performance that could be useful for clinical prognosis and future treatment research. <strong>Supplemental Material S1.</strong> List of foods/liquids the children consumed each day. Malandraki, G. A., Kantarcigil, Ç., Craig, B. A., Zhang, Y., & Gordon, A. M. (2023). Day-to-day variability of clinical feeding and swallowing performance in school-age self-feeding children with cerebral palsy. <em>American Journal of Speech-Language Pathology, 32</em>(1), 190–200. https://doi.org/10.1044/2022_AJSLP-22-00137