cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12875295
title: Additional file 3 of Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources

description: Additional file 3:Lists of all affected biological functions and corresponding affected genes. Complete lists of all affected biological functions (p &lt; 0.05) and corresponding affected genes identified with IPA for the meta-analysis combinations (I) overall response, (II) early stage response, (III) late stage response, (IV) cattle-specific response, (V) early specific response and (VI) late specific response, as well as for the common affected genes between the 4 meta-analysis responses (I) to (IV) (Figure 3, n = 92). The biological functions include all the sub-groups "Diseases and disorders", "Physiological system development and function" and "Molecular and cellular functions" and are listed from the lowest to the highest p-value. The five most affected molecular and cellular functions, which are discussed in the text, are in bold. (XLS 201 KB)
DOI: 10.6084/m9.figshare.12875295.v1
title: Additional file 3 of Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources

description: Additional file 3:Lists of all affected biological functions and corresponding affected genes. Complete lists of all affected biological functions (p &lt; 0.05) and corresponding affected genes identified with IPA for the meta-analysis combinations (I) overall response, (II) early stage response, (III) late stage response, (IV) cattle-specific response, (V) early specific response and (VI) late specific response, as well as for the common affected genes between the 4 meta-analysis responses (I) to (IV) (Figure 3, n = 92). The biological functions include all the sub-groups "Diseases and disorders", "Physiological system development and function" and "Molecular and cellular functions" and are listed from the lowest to the highest p-value. The five most affected molecular and cellular functions, which are discussed in the text, are in bold. (XLS 201 KB)
DOI: 10.6084/m9.figshare.12875304.v1
title: Additional file 6 of Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources

description: Additional file 6:Lists of affected genes that are distinct or in common between (IV) cattle-specific response, experiment 1A time point {3}, and experiment 2 time point {9}. Complete lists of affected genes corresponding to the Venn diagram [Additional file 5: Supplemental Figure S3], including genes that are distinct or in common at the intersections between (IV) cattle-specific response, experiment 1A time point {3}, and experiment 2 time point {9}. The list of experiments and time points can be found in Table 1 and the list of meta-analysis combinations in Table 2. (XLS 30 KB)
DOI: 10.6084/m9.figshare.12875310.v1
title: Additional file 8 of Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources

description: Additional file 8:Lists of affected genes that are distinct or in common between the 4 main responses to mastitis infection. Complete lists of affected genes corresponding to the Venn diagram in Figure 3, including genes that are distinct or in common at the intersections between the 4 different responses (I) overall, (II) early stage, (III) late stage, and (IV) cattle-specific. (XLS 83 KB)
DOI: 10.6084/m9.figshare.12875316.v5
title: Additional file of Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources

description: Additional file of Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources
DOI: 10.6084/m9.figshare.12875316.v8
title: Additional file of Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources

description: Additional file of Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources
DOI: 10.6084/m9.figshare.12875289
title: Additional file 1 of Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources

description: Additional file 1:Lists of affected genes during different responses to mastitis infection. Complete lists of affected genes and corresponding "Combined Effective Significances (CES)" identified with pointillist for the 4 main responses to mastitis (I) overall response, (II) early stage response, (III) late stage response, (IV) cattle-specific response, as well as the two additional time dependent responses (V) early specific and (VI) late specific. (XLS 268 KB)
DOI: 10.6084/m9.figshare.12875310
title: Additional file 8 of Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources

description: Additional file 8:Lists of affected genes that are distinct or in common between the 4 main responses to mastitis infection. Complete lists of affected genes corresponding to the Venn diagram in Figure 3, including genes that are distinct or in common at the intersections between the 4 different responses (I) overall, (II) early stage, (III) late stage, and (IV) cattle-specific. (XLS 83 KB)
DOI: 10.6084/m9.figshare.12875292.v1
title: Additional file 2 of Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources

description: Additional file 2:Lists of all affected canonical pathways and corresponding affected genes. Complete lists of affected canonical pathways (p &lt; 0.05) and corresponding affected genes identified with IPA for the meta-analysis combinations (I) overall response, (II) early stage response, (III) late stage response, (IV) cattle-specific response, (V) early specific response and (VI) late specific response, as well as for the common affected genes between the 4 meta-analysis responses (I) to (IV) (Figure 3, n = 92). The identified canonical pathways are listed from the lowest to the highest p-value. An asterisk indicates that the pathway approached statistical significance (0.05
DOI: 10.6084/m9.figshare.12875304
title: Additional file 6 of Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources

description: Additional file 6:Lists of affected genes that are distinct or in common between (IV) cattle-specific response, experiment 1A time point {3}, and experiment 2 time point {9}. Complete lists of affected genes corresponding to the Venn diagram [Additional file 5: Supplemental Figure S3], including genes that are distinct or in common at the intersections between (IV) cattle-specific response, experiment 1A time point {3}, and experiment 2 time point {9}. The list of experiments and time points can be found in Table 1 and the list of meta-analysis combinations in Table 2. (XLS 30 KB)
DOI: 10.6084/m9.figshare.7976528.v4
title: mass spectrometry, ELISA, western blotting and immunoassay data

description: Table 1: list of proteins co-precipitated with TRKB.Table 2: list of interactions disrupted by fluoxetine.figure 1: in vivo WB/ELISA, CABS docking, AP2M:peptide ELISAfigure 2: in vitro/vivo WB/ELISA, surface TRKBfigure 3: in vitro/ex vivo ELISA, validation with siAP2Mfigure 4: in vitro ELISA/immunostaininganti TRKB validation: lysates from MG87 cells expressing TRKA or TRKB.
DOI: 10.25377/sussex.7976369
title: Dataset for Everyday Childhoods research project. Jasmine - Day in a Life

description: This data was collected as part of Jasmine's day in a life observation, carried out on the 20/06/2014 with Ester McGeeney This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.6084/m9.figshare.12875316.v10
title: Additional file of Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources

description: Additional file of Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources
DOI: 10.6084/m9.figshare.7976528.v5
title: mass spectrometry, ELISA, western blotting and immunoassay data

description: Table 1: list of proteins co-precipitated with TRKB.Table 2: list of interactions disrupted by fluoxetine.figure 1: in vivo WB/ELISA, CABS docking, AP2M:peptide ELISAfigure 2: in vitro/vivo WB/ELISA, surface TRKBfigure 3: in vitro/ex vivo ELISA, validation with siAP2Mfigure 4: in vitro ELISA/immunostaininganti TRKB validation: lysates from MG87 cells expressing TRKA or TRKB.
DOI: 10.6084/m9.figshare.7976354
title: GSM3190507_HCT116_CTCF

description: HCT116 CTCF bw file from GSE115822<br>
DOI: 10.6084/m9.figshare.7976528.v7
title: mass spectrometry, ELISA, western blotting and immunoassay data

description: Supplement Table 1: list of proteins co-precipitated with TRKB.Supplement Table 2: list of interactions disrupted by fluoxetine.figure 1: in vivo WB/ELISA, CABS docking, AP2M:peptide ELISAfigure 2: in vitro/vivo WB/ELISA, surface TRKBfigure 3: in vitro/ex vivo ELISA, validation with siAP2Mfigure 4: in vitro ELISA/immunostaininganti TRKB validation: lysates from MG87 cells expressing TRKA or TRKB.
DOI: 10.25377/sussex.7976369.v1
title: Dataset for Everyday Childhoods research project. Jasmine - Day in a Life

description: This data was collected as part of Jasmine's day in a life observation, carried out on the 20/06/2014 with Ester McGeeney This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.6084/m9.figshare.7976354.v1
title: GSM3190507_HCT116_CTCF

description: HCT116 CTCF bw file from GSE115822<br>
DOI: 10.6084/m9.figshare.7976366.v1
title: Phylogenetic position of the presumably extinct slender-billed curlew, <i>Numenius tenuirostris</i>

description: The high-capacity DNA analysis of museum samples opens new opportunities, associated with the investigation of extinct species evolution. Here, the complete mitochondrial genome of the presumably extinct bird species, the slender-billed curlew <i>Numenius tenuirostris</i> (Charadriiformes: Scolopacidae) is presented. Our results showed that mitochondrial DNA (mtDNA) is 16,705 base pairs (bp) in length and contain 13 protein-coding genes, two rRNA genes, and 22 tRNA genes. The overall base composition of the genome is 30.8% – A, 29.8% – C, 25.4% – T, 14.0% – G, and without a significant GC bias of 43.7%. Phylogenetic analyses based on the cytochrome B (<i>cytB</i>) gene and the whole mtDNA sequences revealed that <i>N. tenuirostris</i> had a close genetic relationship to Eurasian curlew (<i>N. arquata</i>), Far Eastern curlew (<i>N. madagascariensis</i>), and long-billed curlew – <i>N. americanus</i>. Besides, it reveals that <i>Numenius</i> genus is genetically distant from other Scolopacidae taxons. Together, these results provide a clear genetic perspective into the speciation process among the curlew genus members and points to a clear taxonomic position of <i>N. tenuirostris</i>.
DOI: 10.25377/sussex.7976285
title: Dataset for Everyday Childhoods research project. Megan - Recursive Interview

description: This data was collected as part of Megan's recursive interview, carried out on the 20/10/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.25377/sussex.7976273
title: Dataset for Everyday Childhoods research project. Megan - Day in a Life

description: This data was collected as part of Megan's day in a life observation, carried out on the 03/06/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.25377/sussex.7976285.v1
title: Dataset for Everyday Childhoods research project. Megan - Recursive Interview

description: This data was collected as part of Megan's recursive interview, carried out on the 20/10/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.25377/sussex.7976273.v1
title: Dataset for Everyday Childhoods research project. Megan - Day in a Life

description: This data was collected as part of Megan's day in a life observation, carried out on the 03/06/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.25377/sussex.7976264
title: Dataset for Everyday Childhoods research project. Megan - Favourite Things Interview

description: This data was collected as part of Megan's favourite things interview, carried out on the 08/02/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.25377/sussex.7976264.v1
title: Dataset for Everyday Childhoods research project. Megan - Favourite Things Interview

description: This data was collected as part of Megan's favourite things interview, carried out on the 08/02/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.25377/sussex.7976252
title: Dataset for Everyday Childhoods research project. Nathan - Recursive Interview

description: This data was collected as part of Nathan's recursive interview, carried out on the 21/09/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.25377/sussex.7976252.v1
title: Dataset for Everyday Childhoods research project. Nathan - Recursive Interview

description: This data was collected as part of Nathan's recursive interview, carried out on the 21/09/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.25377/sussex.7976231
title: Dataset for Everyday Childhoods research project. Nathan - Day in a Life

description: This data was collected as part of Nathan's day in a life observation, carried out on the 28/06/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.25377/sussex.7976231.v1
title: Dataset for Everyday Childhoods research project. Nathan - Day in a Life

description: This data was collected as part of Nathan's day in a life observation, carried out on the 28/06/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.6084/m9.figshare.7976222
title: CCDB_3741.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7976222.v1
title: CCDB_3741.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.12875379.v3
title: Additional file of Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development

description: Additional file of Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development
DOI: 10.6084/m9.figshare.12875379.v4
title: Additional file of Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development

description: Additional file of Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development
DOI: 10.6084/m9.figshare.12875379.v2
title: Additional file of Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development

description: Additional file of Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development
DOI: 10.25377/sussex.7976165
title: Dataset for Everyday Childhoods research project. Sean - Day in a Life

description: This data was collected as part of Sean's day in a life observation, carried out on the 03/04/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.6084/m9.figshare.7976162
title: Supplementary Data 3 - Panther enrichmentsed Item

description: PANTHER annotations of priority targets across tractability groups (n = 40, 277, 311, respectively) and enrichment of protein classes computed online at http://pantherdb.org, i.e. via systematic hypergeometric tests followed by Benjamini-Hochberg correction of resulting p-values.
DOI: 10.25377/sussex.7976165.v1
title: Dataset for Everyday Childhoods research project. Sean - Day in a Life

description: This data was collected as part of Sean's day in a life observation, carried out on the 03/04/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.6084/m9.figshare.7976156
title: Supplementary Data 2 - GPX4diffExp.xlsxUntitled Item

description: Differential expression and single-sample Gene-Set Enrichment Analysis results comparing gene-expression profiles of cell lines sensitive to GPX4 KO (n=113) versus others (n=161). Enrichment p-values were obtained by randomly permuting the gene signature 10,000 times and adjusting for multiple testing using the Benjamini-Hochberg method.
DOI: 10.6084/m9.figshare.7976153
title: Supplementary Material for: Localization of Four Allergens in <b><i>Artemisia</i></b> Pollen by Immunofluorescent Antibodies

description: <b><i>Background:</i></b> <i>Artemisia</i> pollens have a high potential to induce allergic symptoms. Seven allergen components have been identified, but only Art v 7 has been localized in the pollen grain. This study aimed to localize the allergens in the pollen grains of 4 <i>Artemisia</i> spp. <b><i>Methods:</i></b> Pollen extracts from 2 Chinese <i>Artemisia</i> spp., <i>A. argyi</i> and <i>A. annua</i>, were used to immunize BALB/c mice. Recombinant Art v 1 and Art v 3 allergens were used to select specific monoclonal antibodies (mAbs). Three mAbs were used to purify the natural allergens and were then analyzed by mass spectrometry. As reported previously, polyclonal antibodies were obtained from rabbits immunized with 3 synthesized peptides of Art an 7. Using conventional histology procedures with pollens from 4 <i>Artemisia</i> spp. (<i>A. argyi</i>, <i>A.</i> <i>annua</i>, <i>A. capilaris</i>, and <i>A. sieversiana</i>), allergen images were observed and recorded by fluorescence and confocal laser microscopy. <b><i>Results:</i></b> We obtained 2 specific mAbs against Art v 1, 1 against Art v 2, and 4 against Art v 3 homologs. The Art v 1 and Art v 3 homologs were mainly located on the pollen walls, and the Art v 7 homologous protein was localized intracellularly around nuclei. The location of the Art v 2 homologous protein varied across species, being intracellular around nuclei for <i>A. annua</i> and <i>A.</i> <i>argyi</i>, and in both the pollen wall and around nuclei for <i>A</i>. <i>capilaris</i> and <i>A.</i> <i>sieversiana</i>. <b><i>Conclusions:</i></b> Four mugwort allergens were localized in the pollen, and the major Art v 1 and Art v 3 allergens were located mainly in the pollen wall.
DOI: 10.6084/m9.figshare.7976144
title: Daily Romanian stock prices between 1997 and 2019

description: The data set refers 25 companies listed under the Romanian stock market, as collected daily from the Bucharest Stock Exchange http://www.bvb.ro/ over time. The trading indicators are the number and value of transactions, the number of shares, the minimum, average and maximum prices, the open and close price, and the reference price. <br>The data has been collected since October 16 1997 until March 13 2019. The number of records for each business is different, as triggered by the date of the creation and the enlisting of the company.
DOI: 10.6084/m9.figshare.7976141
title: Supplementary Data 1 - ANOVAresults

description: Pan-cancer/cancer-type-specific ANOVA results associating gene fitness-effects to cancer driver-events and microsatellite instability. ANOVA p-values refer to ANOVA tests, T p-values refer to two-sided Student’s t-tests. False discovery rates were calculated within each analysis by collectively correcting p-values with the Storey-Tibshirani method.
DOI: 10.6084/m9.figshare.12875382
title: Additional file 1 of Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain

description: Additional file 1: Supplemental tables.xls. This one file contains all four Supplemental Tables, each as a separate worksheet. Table S1 ("1 overview") is a summary of Illumina sequence read alignments for six pools of RNA from zebra finch auditory forebrain responding to song versus silence, and shows the distribution of sequence reads in relation to multiple genomes and multiple annotations in the current genomic databases. Table S2 ("2 novel hairpins") gives detailed alignments of putative pre-miRNAs and read sequences. Table S3 ("3 novel genes") shows annotations of all novel miRNA loci mapped in genome assemblies of zebra finch, chicken or human. Table S4 ("4 all read counts") gives read counts and current annotation in miRBase of all conserved and novel miRNAs, with statistics. (XLS 2 MB)
DOI: 10.6084/m9.figshare.12875382.v1
title: Additional file 1 of Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain

description: Additional file 1: Supplemental tables.xls. This one file contains all four Supplemental Tables, each as a separate worksheet. Table S1 ("1 overview") is a summary of Illumina sequence read alignments for six pools of RNA from zebra finch auditory forebrain responding to song versus silence, and shows the distribution of sequence reads in relation to multiple genomes and multiple annotations in the current genomic databases. Table S2 ("2 novel hairpins") gives detailed alignments of putative pre-miRNAs and read sequences. Table S3 ("3 novel genes") shows annotations of all novel miRNA loci mapped in genome assemblies of zebra finch, chicken or human. Table S4 ("4 all read counts") gives read counts and current annotation in miRBase of all conserved and novel miRNAs, with statistics. (XLS 2 MB)