cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.b7x484
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Cyrtochilum halteratum (Lindl.) Kraenzl."
 ]
}

 The dataset includes 110 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001434-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.22081052.v1
title: Revisiting a central prediction of Gill Oxygen Limitation Theory: Gill area index and growth performance

description: data associated with <br> Bigman JS, Wegner NC, & Dulvy, NK. 2023. Revisiting a central prediction of Gill Oxygen Limitation Theory: Gill area index and growth performance. Fish and Fisheries
DOI: 10.6084/m9.figshare.3168250.v1
title: Cicadetta brevipennis Integrative Taxonomy

description: Worksheets containing raw data (acoustics, genetics, morphology) for the description of the Cicadetta brevipennis taxa group:<br>Cicadetta brevipennis brevipennis, C. b. hippolaidica ssp. n., C. b. litoralis ssp. n., C. petryi.<br>
DOI: 10.6084/m9.figshare.5584492.v1
title: Distributions of times to first division for persister and untreated control cells

description: Distributions of time elapsed to first cell division for persister cells surviving a 3 hours treatment with ampicillin at 25xMIC <br>and then exposed to Lysogeny broth (t&gt;3h). The distributions of time elapsed to first cell division for untreated control cells were measured in separate control experiments where LB only, without ampicillin, was added in the mother machine device at t=0.<br>
DOI: 10.6084/m9.figshare.3563436.v1
title: Appendix C. Additional description of methods used to quantify and classify the behavior of gannets at sea.

description: Additional description of methods used to quantify and classify the behavior of gannets at sea.
DOI: 10.6084/m9.figshare.12885200.v1
title: "Do bark beetle outbreaks amplify or dampen future bark beetle disturbances in Central Europe?" data

description: The file "Dataframe_annual_disturbance_data.csv" contains data to create Figure 2 with columns "year", "scen" and "killedVolume" .<br><br>File "Dataframe_structure_composition.csv" contains data to create Figures 3 - 5 and Table 2. Columns with the prefix "lag_" represent values from the preceding time slice. <br>
DOI: 10.6084/m9.figshare.13125572.v1
title: USA Halloween spending

description: Data scraped from National Retail Federation webpage. Values in billions of dollars listed.
DOI: 10.6084/m9.figshare.26936845.v1
title: Data repository for Confluence

description: Data repostory for all samples and associated analyses for paper
DOI: 10.6084/m9.figshare.26369989.v1
title: Data for 'High-dimensional cortical signals reveal rich bimodal and working memory-like representations among S1 neuron populations'

description: This folder contains data for five different experiments: NPBO (tactile patterns with and without simultanous visual flashes)NPBN (tactile patterns with and without simultanous visual flashes)NPBM (tactile patterns with and without simultanous visual flashes and visual patterns)NPBK (visual patterns)NPBI (visual patterns)For each experiment the following files can be found:Name_spike_times.npy (All spike times extracted with Kilosort2.0)Name_spike_clusters.npy (All spike clusters extracted with Kilosort2.0)Name_units.csv (Units/neurons selected for the analysis - names similar to the ones in spike_clusters.npy)Name_stimulationTimes_visual.csv (for visual patterns) OR Name_stimulationTimes_tactile.csv (for tactile patterns) (These are the stimulation times)<br>
DOI: 10.6084/m9.figshare.26866924.v3
title: Scene files for ME OCT/CT fusion of three study participants

description: Each file is saved in the Slicer3D scene format and contains de-identified imaging data from the fused scans. These files provide the original data necessary for replicating the study or further exploring the imaging techniques detailed in our research.<b>Case I</b>: A 57-year-old male with mild sensorineural hearing loss but a normal left middle ear was selected as a healthy control for OCT/CT image fusion.<b>Case II</b>: The right ear of a 28-year-old female patient, who experienced a severe traumatic ear injury. <b>Case III</b>: A 52-year-old male patient, previously operated on for cholesteatoma in the right ear. A hyperintensity was observed in the diffusion-weighted magnetic resonance image (MRI) of his left, unoperated ear.
DOI: 10.6084/m9.figshare.28506146.v1
title: Sample of Interns Discussion for year 2012.

description: This is a sample dataset for anonymous review. The dataset contains data related to interns discussion that was extracted from the Reddit platform.
DOI: 10.6084/m9.figshare.15025296.v5
title: Desmodus rotundus Occurrence Record Database

description: The common vampire bat (<i>Desmodus rotundus</i>) is a hematophagous bat species found across the North, Central, and South American continents. <i>Desmodus rotundus </i>is one of the only tree mammal species exclusively having a sanguivorous diet (i.e., blood). The species has a large distributional range and predates on a large range of vertebrate species. <i>Desmodus rotundus</i> is a know reservoir for the rabies virus and contributes to the continued spread of this pathogen across Latin America. Nevertheless, little is known about the historical distribuion of <i>D. rotundus</i> across it range. Historical occurrence data are critical for the assessment of past and current distributions for this species, and is necessary for a plethora of other ecological, biogeographic, and epidemiological studies. This is a dataset of <i>D. rotundus </i>historical occurrence including &gt;37,000 locality reports across the Americas to facilitate spatiotemporal studies of the species.<br>Data and metadata definitions. The following table provides standardized definitions of each occurrence metadata based on the the Darwin Core Archive format. Each piece of metadata for each occurrence is organized and recorded under the listed column headers.<br>Validation Code: This file contains code for usage and cleaning of the <i>Desmodus rotundus </i>record database. This code was also used for the Technical Validation process of the final <i>D. rotunudus</i> dataset.
DOI: 10.6084/m9.figshare.4287677.v1
title: Integration of MicroRNA, mRNA, and Protein Expression Data for the Identification of Cancer-Related MicroRNA

description: News: 2016/09/27: Source codes and data sets are updated.<br>Paper: Jiyoun Seo, Daeyong Jin, Chan-Hun Choi and Hyunju Lee* (2016) Integration of MicroRNA, mRNA, and Protein Expression Data for the Identification of Cancer-Related MicroRNAs. PLoS One, In Press.<br>Introduction: This study explores two approaches for the investigation of gene-miRNA relationships by integrating mRNA expression and protein expression data. This study presents ranked miRNAs lists according to their effects on cancer development and constructed modules containing mRNAs, proteins, and miRNAs, in which these three molecular types are highly correlated.<br><br><br>Description: Source codes were implemented in r and are available here. Instructions and example input files for running source codes can be downloaded from here. Note that the attached input and output example files are not real data but have the same format with them. Required input files for each step are described in instructions.<br>Data sets: <b>The glioblastoma (GBM) data sets including the expression data of mRNA, protein, miRNA used in this paper were collected from TCGA. The information about GBM-related miRNAs was collected from Human miRNA & Disease Database v2.0 (HMDD v2.0). Protein-protein interaction data sets were collected from the Human Protein Reference Database (HPRD) (Prasad et al.,2009).</b>
DOI: 10.6084/m9.figshare.20318343.v1
title: Some key code examples

description: The stock market is an important part of the capital market, and the research on the price fluctuation of the stock market has always been a hot topic for scholars. As a dynamic and complex system, the stock market is affected by various factors. However, with the development of information technology, information presents multisource and heterogeneous characteristics, and the transmission speed and mode of information have changed greatly. The explanation and influence of multi-source and heterogeneous information on stock market price fluctuations need further study. In this paper, a graph fusion and embedding method for multi-source heterogeneous information of Chinese stock market is established. Relational dimension information is introduced to realize the effective fusion of multi-source heterogeneous data information. A multi-attention graph neural network based on nodes and semantics is constructed to mine the implied semantics of fusion graph data and capture the influence of multi-source heterogeneous information on stock market price fluctuations. Experiments show that the proposed multi-source heterogeneous information fusion methods is superior to tensor or vector fusion method, and the constructed multi-attention diagram neural network has a better ability to explain stock market price fluctuations.
DOI: 10.6084/m9.figshare.5483743.v2
title: Evaluating Big Data Frameworks To Simplify Distributed Task Execution In Apache Airavata

description: Apache Airavata powers users to run scientific applications on remote computing resources. Airavata integrates with science gateways to moderate computational jobs on diverse resources. Some of the job may require to execute multiple tasks. Newer technology trends such as Cloud Computing, BigData and Internet of Things are yielding open source software frameworks which are built for scale and reliability. In this paper we share our experiences in exploring the use of such frameworks and adapt for science gateway task management needs implemented by Apache Airavata.
DOI: 10.6084/m9.figshare.23959320.v1
title: <b>data for </b><b>A </b><b>meta-analysis highlights globally widespread potassium limitation in terrestrial ecosystems</b><b> </b>

description: A meta-analysis of 95 published research articles and compiled a database comprised of 144 K fertilization experiments.
DOI: 10.6084/m9.figshare.26520172.v2
title: <b>High litter quality enhances plant energy channelling by soil macro-detritivores and lowers their trophic position</b>

description: Detritus-based resources, i.e., plant litter, are a major energy source for many living organisms and considered to be a key determinant of primary production and nutrient cycling. Earthworms are among the most important macro-detritivores in terrestrial food webs and play a crucial role in facilitating these processes in terrestrial ecosystems. Yet, the influence of litter quality on earthworm nutrition, and consequently on soil food web dynamics, has remained largely underexplored, mainly for methodological reasons. Here, we combined bulk and novel compound-specific stable isotope analysis of amino acids to investigate the dietary contribution of litter resources of differing quality to earthworm species of different ecological groups. Our findings show that earthworms acquired most essential amino acids from bacterial (~60%) and plant (~30%) resources, with the latter increasing in importance with higher litter quality, resulting in lower trophic positions across earthworm species. The high bacterial contribution to earthworms corresponds to the dominance of bacteria in the experimental soil, suggesting that bacteria served as important intermediate link in transferring detritus-based resources to earthworms. Bacterial contributions were notably higher in the soil-feeding earthworm species than in the litter-feeding earthworm species, likely due to more pronounced ingestion of soil by soil-feeding earthworms. Overall, our study indicates that a major group of soil macro-detritivores, earthworms, receive detrital resources via bacteria. Further, it underscores the important role of litter quality in shaping the trophic niches of detritivores, thereby influencing the overall structure of soil food webs.
DOI: 10.6084/m9.figshare.10113239.v3
title: Fine-Scale Spatiotemporal Air Pollution Analysis Using Mobile Monitors on Google Street View Vehicles

description: People are increasingly concerned with understanding their personal environment, including possible exposure to harmful air pollutants. To make informed decisions on their day-to-day activities, they are interested in real-time information on a localized scale. Publicly available, fine-scale, high-quality air pollution measurements acquired using mobile monitors represent a paradigm shift in measurement technologies. A methodological framework utilizing these increasingly fine-scale measurements to provide real-time air pollution maps and short-term air quality forecasts on a fine-resolution spatial scale could prove to be instrumental in increasing public awareness and understanding. The Google Street View study provides a unique source of data with spatial and temporal complexities, with the potential to provide information about commuter exposure and hot spots within city streets with high traffic. We develop a computationally efficient spatiotemporal model for these data and use the model to make short-term forecasts and high-resolution maps of current air pollution levels. We also show via an experiment that mobile networks can provide more nuanced information than an equally sized fixed-location network. This modeling framework has important real-world implications in understanding citizens’ personal environments, as data production and real-time availability continue to be driven by the ongoing development and improvement of mobile measurement technologies. Supplementary materials for this article, including a standardized description of the materials available for reproducing the work, are available as an online supplement.
DOI: 10.6084/m9.figshare.1030546.v1
title: InclinedPlaneExperimentalData

description: Experimental Data of paper: La Scaleia B, Lacquaniti F, Zago M (2014) Neural Extrapolation of Motion for a Ball Rolling Down an Inclined Plane. PLoS ONE 9(6): e99837. doi:10.1371/<br>journal.pone.0099837
DOI: 10.6084/m9.figshare.5634418
title: The application of Inca khipu as an accountability and managerial control tool

description: Abstract Purpose: This study aims to present the mechanisms of control and accountability used in the Inca society. Design/methodology/approach: For this purpose, a bibliographical and documental analysis regarding the use of khipus in this civilization was carried out, applying a qualitative approach. Findings: The results of the study indicate that the Inca khipu was the main instrument of tax registration and management adopted by the Inca empire. The Khipucamayocs were responsible for the production of the Khipu, asserting that the information generated and consolidated in the imperial khipu was correct, considering that these professionals paid with their lives in case of errors. Originality/value: The main contributions to accounting are related to the understanding of the origin of the development of tax control and accountability tools created in the Inca Empire, before the Spanish invasions, that contributed significantly to the development of the first American societies.
DOI: 10.6084/m9.figshare.5890888.v1
title: Events detected by the Global Flood Monitor

description: This dataset shows the events found by the detection algorithm . The dataset includes the the area in which the event is detected including its geonameid, the event onset and the event end.<br>
DOI: 10.6084/m9.figshare.26747822.v1
title: Additional file 3 of Propionate production by Bacteroidia gut bacteria and its dependence on substrate concentrations differs among species

description: Additional file 3: Table S4. Results of BLASTp searches with 11 Bacteroidia species against amino acid sequences of characterized enzymes of the central carbon and energy metabolism. Table S5. Results of BLASTn searches with two genomes each of the strains B. graminisolvens XDT-1 and B. propionicifaciens SV434 against amino acid sequences of characterized enzymes of the central carbon and energy metabolism.
DOI: 10.6084/m9.figshare.22297816.v1
title: Presence of onco-fetal neighborhoods in hepatocellular carcinoma is associated with relapse and response to immunotherapy

description: The HCC01 and HCC03 Stereo-seq data have been deposited in the China National GeneBank Sequence Archive (CNSA) under accession code CNP0004497. The M311 and M316 Stereo-seq data have been deposited in the Sequence Read Archive (SRA) under accession code PRJNA1005053. The CoxMx data have been deposited in the under accession code. The original data used to construct the HCC atlas are available with accession codes GSE156337, GSE149614, GSE151530, GSE212046 (GEO), HRA000069 (Genome Sequence Archive) and CNP0000650 (CNSA). The original data of PLANET cohort and GO30140 and IMbrave150 trials are available with accession codes EGAS00001003813 and EGAS00001005503 (European Genome-phenome Archive). The TCGA LIHC datasets were downloaded from UCSC Xena (http://xena.ucsc.edu/). All processed expression data have been uploaded to figshare, which can be visited through the following private links: HCC Atlas, https://doi.org/10.6084/m9.figshare.22332568; Onco-fetal CAF Identification, https://doi.org/ 10.6084/m9.figshare.22332655; HCC01 and HCC03 Stereo-seq Data, https://doi.org/10.6084/m9.figshare.22332223; Nanostring CosMx Data, https://doi.org/10.6084/m9.figshare.23972991; PLANET corhort Data, https://doi.org/10.6084/m9.figshare.23732370; HCC and Fetal Liver Nanostring DSP Data, https://doi.org/10.6084/m9.figshare.22332397; HCC Immunotherapy Stereo-seq Data, https://doi.org/10.6084/m9.figshare.22332352. Source data for Fig. 1-8 and Extended Data Fig. 1-10 have been provided as Source Data files. All other data supporting the findings of this study are available from the corresponding author upon reasonable request.
DOI: 10.6084/m9.figshare.23959215.v1
title: Pilot study on the efficacy and safety of berberine in people with metabolic syndrome and human immunodeficiency virus infection, database BBR vs CTR

description: A pilot randomized, double-blind, placebo-controlled clinical trial was designed with two groups, each one with 20 patients: group A) Berberine 500 mg per capsule three times daily for 20 weeks, and group B) Placebo (calcinate magnesia) 400 mg per capsule three times daily for 20 weeks.Participants were randomly assigned using an Excel program to receive berberine or a placebo, one capsule after each meal for 20 weeks. All participants received medical and nutritional guidance; we emphasized consumption of fiber according to weight, and avoidance of saturated and trans fats; also, we recommended maintaining the same physical activity that was part of their daily routine to avoid interfering with the final outcomes.Basal and final measurements of hematology, glucose, creatinine, urea, total cholesterol, LDL-c, HDL-c, VLDL-c, triglycerides, high sensitivity C-reactive protein (hs-CRP), total bilirubin, total proteins, albumin, AST, ALT, GGT, alkaline phosphatase, HBsAg, anti-HCV antibodies, insulin, C-peptide, glucagon and glycated hemoglobin (HbA1c) were obtained, with at least 8 h of fasting.Cardiovascular risk was estimated.We calculated: the Homeostatic Model Assessment of Insulin Resistance (HOMA-IR), the HOMA-%β, and the HOMA-%S.Serum levels of proinflammatory cytokines: IL-1β, TNF-a, and IL-6, insulin, glucagon, and C-peptide were quantified.
DOI: 10.6084/m9.figshare.27299778.v3
title: Resilience Mediates the Relationship Between Social Support and Anxiety in Postpartum Mothers (Open-Access Data)

description: This project contains the following data:- Data File. <i>(SPSS file containing raw data)</i>- Data Output. <i>(SPSS file containing analysis output)</i>
DOI: 10.6084/m9.figshare.26085487.v1
title: <b>County-level Cooking Emission inventory in China from 1990 to 2021</b>

description: This dataset provides county-level cooking emission inventory in China from 1990 to 2021 by counties, subsectors, and pollutants in the xlsx file.- The years include every year from 1990 to 2021.- The provinces cover all 2848 counties of mainland China based on 2020 administrative divisions.- The subsectors include commercial cooking, residential cooking, and canteen cooking.-The pollutants include organics in the full volatility range (VOCs, SVOCs, IVOCs, and xLVOCs), PM2.5, ultrafine particles (UFPs), and polycyclic aromatic hydrocarbons (PAHs, encompassing gaseous PAHs, particulate PAHs, and benzo[a]pyrene equivalents (BaPeq))- The emissions of UFPs are in particles/yr and emissions of other pollutants are in kt/year.
DOI: 10.6084/m9.figshare.6992132.v1
title: Neo-Malthusianism and eugenics in the struggle over meaning in the Spanish anarchist press, 1900-1936

description: Abstract This article analyzes the debate on neo-Malthusianism and eugenics in Spanish anarchist publications in the first third of the last century. Using theoretical frameworks that have been under-utilized thus far, it provides new interpretations of what the term “eugenics” meant in pro-anarchist neo-Malthusian journals. Framed within a “struggle over meaning,” Spanish neo-Malthusianism re-signified eugenic ideas in an attempt to recover political ground that had been lost in the drive to promote individual control of human sexuality. This study also analyzes the role of the anarcho-syndicalist movement’s “direct action” strategy, in which actions undertaken by individualist anarchists were seen as a complement to revolutionary action.
DOI: 10.6084/m9.figshare.14490634.v1
title: Additional file 1 of Single-cell characterization of a model of poly I:C-stimulated peripheral blood mononuclear cells in severe asthma

description: Additional file 1. Additional tables.
DOI: 10.6084/m9.figshare.28452167.v1
title: 61slides checkpoints

description: This is the checkpoint of spatialformer, which is trained by 61 lung slides