cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12018450.v1
title: Metadata and data associated with the published article: Systemic Short Chain Fatty Acids limit antitumor effect of CTLA-4 blockade in hosts with cancer

description: This dataset consists of 10 <b>.xlsx</b> spreadsheets containing all source data from the related manuscript. <br>The spreadsheets are as follows.<br>- <b>NCOMMS-19-10571A_Raw NGS data.xlsx</b> <br>This spreadsheet contains summary statistics for all raw Next Generation Sequencing data described in the manuscript. There are 38 tabs of data.- Data underlying figures 1 to 6 in the related manuscript are included in files with the naming format '<b>ncomms-source-data Fig X.xlsx</b>'. Each such file contains separate tabs for each sub-figure. Data underlying Figures 1 and 2 are presented in the same spreadsheet.- Data underlying supplementary figures 1 to 18 of the related manuscript are included in files with the naming format '<b>ncomms-source-data Supp Fig A_B.xlsx</b>', where A is the first supplementary figure in the spreadsheet, and B is the last. Each such file contains separate tabs for each supplementary figure.<br>The related publication evaluated whether short chain fatty acid (SCFA) levels could be related to the clinical outcome in mice and in patients treated with anti-CTLA-4 blocking mAbs.<br>
DOI: 10.6084/m9.figshare.12018429
title: Metadata associated with the published article: Prediction of the functional impact of missense variants in BRCA1 and BRCA2 with BRCA-ML

description: <b>Summary</b>The data described in this metadata record underlie the figures and supplementary tables in the related manuscript. The data are in silico predictions of missense variants of uncertain significance (VUS) in the BRCA1 and BRCA2 genes (BReast CAncer genes), generated by training and evaluating hundreds of machine learning algorithms based on results from validated functional assays to better predict missense variants in these genes as damaging or neutral.<b><br></b><b>Data description</b>The primary data output of the related publication is Supplemental Data Set 1 (as it appears in the article), which contains all possible SNVs (single nucleotide variants) in both BRCA1 and BRCA2 genes. In the GitHub repository and the zip file that appears as part of this metadata record, this data output is named as TableS2.tsv, in the following location: BRCA-ML\results\TableS2.tsv.<b><br></b>The AutoML approach was employed, with the R (version 3.4.2) CRAN - Package h2o.ai (version: 3.16.0.2). This is available at https://CRAN.R-project.org/package=h2o (Accessed: 29th January 2018).<b><br></b><b>Data access</b>The data and code are available at GitHub here: https://github.com/Steven-N-Hart/BRCA-MLAdditionally, a static version of the data and code as it was at the time the related publication was published is available in the zipped folder attached to this metadata record.<br>The data is shared under an MIT Licence.
DOI: 10.6084/m9.figshare.12018429.v1
title: Metadata associated with the published article: Prediction of the functional impact of missense variants in BRCA1 and BRCA2 with BRCA-ML

description: <b>Summary</b>The data described in this metadata record underlie the figures and supplementary tables in the related manuscript. The data are in silico predictions of missense variants of uncertain significance (VUS) in the BRCA1 and BRCA2 genes (BReast CAncer genes), generated by training and evaluating hundreds of machine learning algorithms based on results from validated functional assays to better predict missense variants in these genes as damaging or neutral.<b><br></b><b>Data description</b>The primary data output of the related publication is Supplemental Data Set 1 (as it appears in the article), which contains all possible SNVs (single nucleotide variants) in both BRCA1 and BRCA2 genes. In the GitHub repository and the zip file that appears as part of this metadata record, this data output is named as TableS2.tsv, in the following location: BRCA-ML\results\TableS2.tsv.<b><br></b>The AutoML approach was employed, with the R (version 3.4.2) CRAN - Package h2o.ai (version: 3.16.0.2). This is available at https://CRAN.R-project.org/package=h2o (Accessed: 29th January 2018).<b><br></b><b>Data access</b>The data and code are available at GitHub here: https://github.com/Steven-N-Hart/BRCA-MLAdditionally, a static version of the data and code as it was at the time the related publication was published is available in the zipped folder attached to this metadata record.<br>The data is shared under an MIT Licence.
DOI: 10.6084/m9.figshare.12018303
title: Bio Detective dataset.xlsx

description: Dataset related to game-based learning outcomes and in-game behaviors
DOI: 10.6084/m9.figshare.12018303.v1
title: Bio Detective dataset.xlsx

description: Dataset related to game-based learning outcomes and in-game behaviors
DOI: 10.6084/m9.figshare.12018243.v1
title: Vacuuming the LAA: Left Atrial Appendage Thrombectomy using AngioVac to Facilitate Percutaneous Mitral Balloon Valvuloplasty

description: Vacuuming the LAA: Left Atrial Appendage Thrombectomy using AngioVac to Facilitate Percutaneous Mitral Balloon Valvuloplasty
DOI: 10.6084/m9.figshare.12018171
title: Simulations

description: The algorithm used to build the computer simulations was previously described elsewhere (Beltrame & Hughson, 2017a, 2017c). The simulated aVO2 time series response to an CWR and PRBS protocol (with a work rate variation between 25 and 100 watts) were built from the combinatorial analysis of the following parameters range: 10 &lt; τ &lt; 90 s (increment of 1 s) and 150 &lt; steady state amplitude &lt; 1650 ml·min-1 (every 75 ml·min-1). Each of these simulations was distorted by a white noise generator with a magnitude varying from 0 (without noise, for reference) to 450 ml·min-1 (every 5ml·min-1) resulting in 152,919 simulations with different aerobic system speeds, amplitudes and noise level, for each protocol (CWR and PRBS). The signal-to-noise of these simulations ranged from 0.3 to 330. Since τ, MNG, and CCFpeak are not influenced by baseline values, no baseline was added to the simulations. The τ range of these simulations was selected in order to include the same τ range of the experimental data (that was previously calculated).
DOI: 10.6084/m9.figshare.12018171.v1
title: Simulations

description: The algorithm used to build the computer simulations was previously described elsewhere (Beltrame & Hughson, 2017a, 2017c). The simulated aVO2 time series response to an CWR and PRBS protocol (with a work rate variation between 25 and 100 watts) were built from the combinatorial analysis of the following parameters range: 10 &lt; τ &lt; 90 s (increment of 1 s) and 150 &lt; steady state amplitude &lt; 1650 ml·min-1 (every 75 ml·min-1). Each of these simulations was distorted by a white noise generator with a magnitude varying from 0 (without noise, for reference) to 450 ml·min-1 (every 5ml·min-1) resulting in 152,919 simulations with different aerobic system speeds, amplitudes and noise level, for each protocol (CWR and PRBS). The signal-to-noise of these simulations ranged from 0.3 to 330. Since τ, MNG, and CCFpeak are not influenced by baseline values, no baseline was added to the simulations. The τ range of these simulations was selected in order to include the same τ range of the experimental data (that was previously calculated).
DOI: 10.6084/m9.figshare.12018096
title: Formação dos membros dos projetos no grau de graduação

description: Esse dataset refere-se a formação dos membros dos projetos da Pós graduação brasileira, no período de 2013-2016, utlizado para calcular o indicador de colaboração científica (CC) de Vívian Costa Alves. <br>
DOI: 10.6084/m9.figshare.12018096.v1
title: Formação dos membros dos projetos no grau de graduação

description: Esse dataset refere-se a formação dos membros dos projetos da Pós graduação brasileira, no período de 2013-2016, utlizado para calcular o indicador de colaboração científica (CC) de Vívian Costa Alves. <br>
DOI: 10.6084/m9.figshare.12018066
title: Formação dos membros dos projetos em nível de graduação

description: Esse dataset refrere-se a formação dos membros dos projetos no grau de graduação, utilizado para calcular o indicador de colaboração científica (CC) da tese de Vívian Costa Alves. <br>
DOI: 10.6084/m9.figshare.12018066.v1
title: Formação dos membros dos projetos em nível de graduação

description: Esse dataset refrere-se a formação dos membros dos projetos no grau de graduação, utilizado para calcular o indicador de colaboração científica (CC) da tese de Vívian Costa Alves. <br>
DOI: 10.6084/m9.figshare.12018039
title: Supplementary Material for: Psychosocial Work Exposures of the Job Strain Model and Suicide in France: Findings from the STRESSJEM Prospective Study of 1.5 Million Men and Women over 26 Years of Follow-Up

description: Medicine
DOI: 10.6084/m9.figshare.12018039.v1
title: Supplementary Material for: Psychosocial Work Exposures of the Job Strain Model and Suicide in France: Findings from the STRESSJEM Prospective Study of 1.5 Million Men and Women over 26 Years of Follow-Up

description: Medicine
DOI: 10.6084/m9.figshare.12018027
title: Scientific Data ISA-Tab metadata archive

description: This dataset consists of all of the ISA-Tab format metadata files accompanying Data Descriptors published in Scientific Data from journal launch in May 2014 to September 2019 inclusive. In the September 2020 the journal transitioned to a JSON-LD format for these metadata files.<br>The dataset consists of a single ZIP archive containing sub-directories for each Data Descriptor's metadata. Each directory is given a unique identifier based on the publication's DOI. More information on the metadata specification can be found on the journal blog, here: http://blogs.nature.com/scientificdata/2014/01/08/scientific-datas-metadata-specification/<br>Prior to release, all investigation files were processed to remove a number of redundant and unnecessary data fields. For this reason, they will differ slightly from the versions still hosted alongside the papers on the Scientific Data journal website. Specifically, the following fields have been removed:* Comment[Subject Keywords] * Comment[Supplementary Information File Name] * Comment[Supplementary Information File Type] * Comment[Supplementary Information File URL]The tool used to perform this processing is freely available on Github: https://github.com/joeasalter/scidata-isatab-cleaner
DOI: 10.6084/m9.figshare.12018012
title: Data for A natural catastrophic turnover event: individual sociality matters despite community resilience in wild house mice

description: Data for A natural catastrophic turnover event: individual sociality matters despite community resilience in wild house mice.<br>Edge dataframe:From/To: Identity of individuals in dyadWeight: Proportion of time individuals spent together in nestboxes out of total nestbox time in seconds.Weights of 0 are not included.<br>timetep: Timestep, 1-6<br><br><br>Node dataframe:<br>name: node IDsex: sex, either M or F<br>com: dynamic community IDtimestep: Timestep. 1-6died: was this individual found deadpresent: is this individual present in this timestepsurvivor: did this individual survive the event (not found dead and did not disappear)allsteps: Is this individual present in all timesteps<br><br><br>
DOI: 10.6084/m9.figshare.12018012.v1
title: Data for A natural catastrophic turnover event: individual sociality matters despite community resilience in wild house mice

description: Data for A natural catastrophic turnover event: individual sociality matters despite community resilience in wild house mice.<br>Edge dataframe:From/To: Identity of individuals in dyadWeight: Proportion of time individuals spent together in nestboxes out of total nestbox time in seconds.Weights of 0 are not included.<br>timetep: Timestep, 1-6<br><br><br>Node dataframe:<br>name: node IDsex: sex, either M or F<br>com: dynamic community IDtimestep: Timestep. 1-6died: was this individual found deadpresent: is this individual present in this timestepsurvivor: did this individual survive the event (not found dead and did not disappear)allsteps: Is this individual present in all timesteps<br><br><br>
DOI: 10.6084/m9.figshare.12018000
title: 20200312_DataDepository_AgingPX627.xlsx

description: Raw data concerning the research article "Infertility induced by auxin in PX627 Caenorhabditis elegans does not affect mitochondrial function and longevity parameters"
DOI: 10.6084/m9.figshare.12018000.v1
title: 20200312_DataDepository_AgingPX627.xlsx

description: Raw data concerning the research article "Infertility induced by auxin in PX627 Caenorhabditis elegans does not affect mitochondrial function and longevity parameters"
DOI: 10.6084/m9.figshare.12017976
title: Morphology of magnetofossils.docx

description: Morphology of extracted magnetofossils from seven representative samples in core MD01-2444.
DOI: 10.6084/m9.figshare.12017976.v1
title: Morphology and magnetofossils.docx

description: Morphology of extracted magnetofossils from seven representative samples in core MD01-2444.
DOI: 10.6084/m9.figshare.12017898
title: Core Self-evaluations Affecting Retirement-Related Outcomes

description: Dataset of the paper "Core Self-evaluations Affecting Retirement-Related Outcomes"
DOI: 10.6084/m9.figshare.12017898.v2
title: Core Self-evaluations Affecting Retirement-Related Outcomes

description: Dataset of the paper "Core Self-evaluations Affecting Retirement-Related Outcomes"
DOI: 10.6084/m9.figshare.12017898.v1
title: Core Self-evaluations Affecting Retirement-Related Outcomes

description: Dataset of the paper "Core Self-evaluations Affecting Retirement-Related Outcomes"
DOI: 10.6084/m9.figshare.12017886
title: Dataset of article: Is adherence to the 24-hour movement guidelines associated with a reduced risk of adiposity among children and adolescents?

description: This file contains data for an article entitled: Is adherence to the 24-Hour Movement Guidelines associated with a reduced risk of adiposity among children? published in BMC Public Health.
DOI: 10.6084/m9.figshare.12017868
title: Supplementary data.docx

description: <b>Association between night-shift -work and level of melatonin: Systematic review and meta-analysis</b>
DOI: 10.6084/m9.figshare.12017865
title: Supplementary Material for: Improvement of in situ Follicular Activation and Early Development in Cryopreserved Human Ovarian Cortical Tissue by Co-Culturing with Mesenchymal Stem Cells

description: Follicular loss and tissue degeneration are great challenges in ovarian tissue culture systems. Mesenchymal stem cells (MSC) secrete a cocktail of growth factors and cytokines which supports adjacent cells and tissues. The aim of the current study was to investigate the impact of human bone marrow (hBM)-MSC, as co-culture cells, on human follicular development in ovarian cortical tissue (OCT) culture. For this purpose, warmed OCT fragments were co-cultured with hBM-MSC for 8 days and compared to monocultured OCT. During the culture period, ovarian follicle survival and development in the OCT were evaluated using histological observation, follicular developmental-related genes expression, and estradiol production. Furthermore, cell proliferation and apoptosis were assessed. The results showed that there were no significant differences in conserved ovarian follicles with a normal morphology between the two groups. However, the percentage of developing follicles, as well as follicular developmental gene expression, significantly increased in the co-culture group compared to the monoculture group. On the other hand, compared with the monoculture group, the co-culture group demonstrated a significant increase in cell proliferation, indicated by <i>Ki67</i> gene expression, as well as a dramatic decrease in apoptotic cell percentage, revealed by TUNEL assay. These findings indicated that co-culturing of hBM-MSC with OCT could improve follicular activation and early follicular development in human ovarian tissue culture systems.
DOI: 10.6084/m9.figshare.12017868.v1
title: Supplementary data.docx

description: <b>Association between night-shift -work and level of melatonin: Systematic review and meta-analysis</b>
DOI: 10.6084/m9.figshare.12017865.v1
title: Supplementary Material for: Improvement of in situ Follicular Activation and Early Development in Cryopreserved Human Ovarian Cortical Tissue by Co-Culturing with Mesenchymal Stem Cells

description: Follicular loss and tissue degeneration are great challenges in ovarian tissue culture systems. Mesenchymal stem cells (MSC) secrete a cocktail of growth factors and cytokines which supports adjacent cells and tissues. The aim of the current study was to investigate the impact of human bone marrow (hBM)-MSC, as co-culture cells, on human follicular development in ovarian cortical tissue (OCT) culture. For this purpose, warmed OCT fragments were co-cultured with hBM-MSC for 8 days and compared to monocultured OCT. During the culture period, ovarian follicle survival and development in the OCT were evaluated using histological observation, follicular developmental-related genes expression, and estradiol production. Furthermore, cell proliferation and apoptosis were assessed. The results showed that there were no significant differences in conserved ovarian follicles with a normal morphology between the two groups. However, the percentage of developing follicles, as well as follicular developmental gene expression, significantly increased in the co-culture group compared to the monoculture group. On the other hand, compared with the monoculture group, the co-culture group demonstrated a significant increase in cell proliferation, indicated by <i>Ki67</i> gene expression, as well as a dramatic decrease in apoptotic cell percentage, revealed by TUNEL assay. These findings indicated that co-culturing of hBM-MSC with OCT could improve follicular activation and early follicular development in human ovarian tissue culture systems.
DOI: 10.6084/m9.figshare.12017847
title: heatwaves calculated from Berkeley Earth

description: heatwaves calculated from Berkley Earth dataset
DOI: 10.6084/m9.figshare.12017841
title: Supplementary data.docx

description: <b>Association between night-shift -work and level of melatonin: Systematic review and meta-analysis</b>
DOI: 10.6084/m9.figshare.12017841.v1
title: Supplementary data.docx

description: <b>Association between night-shift -work and level of melatonin: Systematic review and meta-analysis</b>
DOI: 10.6084/m9.figshare.12017838
title: HadGHCND heatwave calculations

description: file with heatwaves calculated from HadGHCND data.
DOI: 10.6084/m9.figshare.12017823
title: Metadata record for: Simultaneous human intracerebral stimulation and HD-EEG, ground-truth for source localization methods

description: This dataset contains key characteristics about the data described in the Data Descriptor Simultaneous human intracerebral stimulation and HD-EEG, ground-truth for source localization methods. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.12017823.v1
title: Metadata record for: Simultaneous human intracerebral stimulation and HD-EEG, ground-truth for source localization methods

description: This dataset contains key characteristics about the data described in the Data Descriptor Simultaneous human intracerebral stimulation and HD-EEG, ground-truth for source localization methods. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.12017814
title: Dataset: pink-footed shearwater burrow occupancy and hatching success

description: Comma-separated-value file containing the raw burrow occupancy and hatching success data. Each row corresponds to one breeding burrow. Please refer to the README file for additional details
DOI: 10.6084/m9.figshare.12017814.v1
title: Dataset: pink-footed shearwater burrow occupancy and hatching success

description: Comma-separated-value file containing the raw burrow occupancy and hatching success data. Each row corresponds to one breeding burrow. Please refer to the README file for additional details
DOI: 10.6084/m9.figshare.12017787
title: Foraging behaviour links sea-ice to breeding success in Antarctic penguins

description: Data for the foraging behavior, body condition, and breeding status of Adélie penguins.
DOI: 10.6084/m9.figshare.12017787.v1
title: Foraging behaviour links sea-ice to breeding success in Antarctic penguins

description: Data for the foraging behavior, body condition, and breeding status of Adélie penguins.
DOI: 10.6084/m9.figshare.12017781
title: Overexpression of <i>YPT6</i> restores invasive filamentous growth and secretory vesicle clustering in a <i>Candida albicans arl1</i> mutant

description: Virulence of the human fungal pathogen <i>Candida albicans</i> depends on the switch from budding to filamentous growth. Deletion of the Arf GTPase Arl1 results in hyphae that are shorter as well as reduced virulence. How Arl1 is regulated during hyphal growth, a process characteristic of filamentous fungi, yet absent in <i>S. cerevisiae</i>, is unknown. Here, we investigated the importance of the Rab6 homolog, Ypt6, in Arl1-dependent hyphal growth and determined that <i>YPT6</i> overexpression specifically rescued the hyphal growth defect of an <i>arl1</i> mutant, but not the converse. Furthermore, we show that deletion of <i>ARL1</i> results in an alteration of the distribution of the Rab8 homolog, Sec4, in hyphal cells and that this defect is restored upon <i>YPT6</i> overexpression.
DOI: 10.6084/m9.figshare.12017781.v1
title: Overexpression of <i>YPT6</i> restores invasive filamentous growth and secretory vesicle clustering in a <i>Candida albicans arl1</i> mutant

description: Virulence of the human fungal pathogen <i>Candida albicans</i> depends on the switch from budding to filamentous growth. Deletion of the Arf GTPase Arl1 results in hyphae that are shorter as well as reduced virulence. How Arl1 is regulated during hyphal growth, a process characteristic of filamentous fungi, yet absent in <i>S. cerevisiae</i>, is unknown. Here, we investigated the importance of the Rab6 homolog, Ypt6, in Arl1-dependent hyphal growth and determined that <i>YPT6</i> overexpression specifically rescued the hyphal growth defect of an <i>arl1</i> mutant, but not the converse. Furthermore, we show that deletion of <i>ARL1</i> results in an alteration of the distribution of the Rab8 homolog, Sec4, in hyphal cells and that this defect is restored upon <i>YPT6</i> overexpression.