cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24512725.v1
title: PMC-Patients Meta Data

description: ## PMC-Patients Meta Data<br><br>Meta data for PMC-Patients that might facilitate reproduction or usage of our dataset, consisting of the following files (most of which can be derived from our main files above).<br><br>### PMIDs.json<br><br>PMIDs of articles from which PMC-Patients are extracted.<br>List of string, length 140,897.<br><br>### train_PMIDs.json & dev_PMIDs.json & test_PMIDs.json & human_PMIDs.json<br><br>PMIDs of articles in training / dev / test split.<br>List of string.<br><br>### train_patient_uids.json & dev_patient_uids.json & test_patient_uids.json & human_patient_uids.json<br><br>Patient_uids of notes in training / dev / test split.<br>List of string.<br><br>### patient2article_relevance.json<br><br>Full patient-to-article dataset.<br>A dict where the keys are `patient_uid` of queries and each entry is a list of `PMID`, representing articles relevant to the query.<br><br>The 3-point relevance can be obtained by checking whether the `PMID` is in `PMIDs.json`.<br><br>### patient2patient_similarity.json<br><br>Full patient-to-patient similarity dataset.<br>A dict where the keys are `patient_uid` of queries and each entry is a list of `patient_uid`, representing similar patients to the query.<br><br>The 3-point similarity can be obtained by checking whether the similar patient share the `PMID` (the string before '-' in `patient_uid`) with the query patient.<br><br><br>### PMID2Mesh.json<br><br>Dict of PMIDs to MeSH terms of the article.<br><br>### MeSH_Humans_patient_uids.json<br><br>`patient_uid` of the patients in PMC-Patients-Humans (extracted from articles with "Humans" MeSH term).<br>List of string.<br><br>### PMC-Patients_citations.json<br><br>Citations for all articles we used to collect our dataset.<br>A dict where the keys are `patient_uid` and each entry is the citation of the source article.<br><br>### human_PMIDs.json<br><br>PMIDs of the 500 randomly sampled articles for human evaluation.<br>List of string.<br><br>### PMC-Patients_human_eval.json<br><br>Expert annotation results of the 500 articles in `human_PMIDs.json`, including manually annotated patient note, demographics, and relations of the top 5 retrieved articles / patients.<br>List of dict, and the keys are almost identical to `PMC-Patients.json`, with the exception of `human_patient_id` and `human_patient_uid`.<br><br>The relational annotations are different from automatic ones. They are strings indicating on which dimension(s) are the patient-article / patient-patient pair relevant / similar. <br>"0", "1", "2", and "3" represent "Irrelevant", "Diagnosis", "Test", "Treatment" in ReCDS-PAR, and represent "Dissimilar", "Features", "Outcomes", "Exposure" in ReCDS-PPR.<br>Note that a pair can be relevant / similar on multiple dimensions at the same time.<br><br>### PAR_PMIDs.json<br><br>PMIDs of the 11.7M articles used as PAR corpus.<br>List of string.<br><br><br>
DOI: 10.6084/m9.figshare.28976033.v1
title: Diatom count and cadmium flux data

description: Diatom count data and cadmium flux data.
DOI: 10.17632/87pnsmykgk
title: NURBS curves and surfaces

description: NURBS curves and surfaces used for sampling experiments and additional instructions
DOI: 10.6084/m9.figshare.28944443.v1
title: The datasets generated and/or analyse for the study: <b> Structural insights into FOXP2 multimerization and interactions from AlphaFold3 modelling</b>

description: The datasets generated and/or analyse for the study: <b>Structural insights into FOXP2 multimerization and interactions from AlphaFold3 modelling</b>
DOI: 10.6084/m9.figshare.8866835.v1
title: Additional file 10: of Frequent intra- and inter-species introgression shapes the landscape of genetic variation in bread wheat

description: Table S13. The introgressions overlapped with the previously mapped QTLs. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.14465781.v1
title: Soil carbon protection by aggregates is influenced by temperature and microbial diversity

description: Dataset of the manuscript "<b>Soil carbon protection by aggregates is influenced by temperature and microbial diversity</b>".<br>
DOI: 10.6084/m9.figshare.22211245.v1
title: Chapter 3 Dataset

description: Dataset for use in R code for Chapter 3 of 'A Cross-Species and Cross-Cultural Comparative Analysis of Sex and Gender Differences in Rough and Tumble Play'.
DOI: 10.25375/uct.9505409.v1
title: Microsatellite data for HiP lions

description: Supplementary material for "Genetic rescue of an isolated African lion population" published in Conservation Genetics.<br>Raw microsatellite data for lions (Panthera leo) in Hluhluwe-iMfolozi Park (HiP), KZN, South Africa. Lions were sampled from three populations: 1. original HiP lions; 2. lions that were translocated into the population in a genetic rescue effort in 1999-2001; 3. lions post-genetic rescue collected between 2009 - 2014.<br><br><br><br>
DOI: 10.6084/m9.figshare.13066031.v1
title: Metallic lens paper

description: Data for the "1-D axicon lens based on parallel-plate waveguides for terahertz frequencies" paper
DOI: 10.6084/m9.figshare.14923917.v1
title: How Readers Discover Content in Scholarly Journals, 2021

description: Results from a large scale study into how readers discovery content in scholarly journals.
DOI: 10.6084/m9.figshare.2057997.v1
title: document data

description: The 20 newsgroups corpus is a widely used corpus belonging to 20 related categories,which includes 18,821 documents and 8,156 distinct words.<br>Web-snippets is a set of search snippets belonging to 8 domains/categories, which has 12,340 snippets with 30,338 distinct words.
DOI: 10.6084/m9.figshare.26354221.v5
title: Comparative study of online learning media for PBL in leading, remote, and left behind regions<i> </i>[Dataset]

description: <b>Files:</b><br><b>RAW Data_Students Motivation </b><b>(In English)</b><b>RAW Data_</b><b>Group Dynamic </b><b>(In English)</b>
DOI: 10.6084/m9.figshare.28417001.v1
title: <b>WSCC Based Grid Aware Dataset of Electric Vehicle Charging Transcations</b>

description: A novel grid-aware data set of EV charging sessions for V2G simulation and research. The data set presented in this paper is derived from existing public real world data sets of Palo Alto City EVCS Data and Boulder City EVCS Data which have been integrated and restructured based on commonalities in grid structure, ensuring consistency and completeness for accurate modeling of EV impacts on the grid. The data set is sufficiently large in aspects of its timeline, involved infrastructure, user behaviour, quantity and quality of charge records. This enables a comprehensive analysis from the perspectives of the EV charger, the user, and, most importantly, the grid. It includes detailed identification information and location categories, which provide valuable insights into EV mobility behaviors, such as charging location, time, level, and duration.
DOI: 10.17632/k2mkssp6w3
title: Material de apoyo para Curso de Intervención Psicológica en manejo de duelo

description: Este material se sube con la intención de apoyar el desarrollo del curso de intervención psicológica en manejo de duelo para estudiantes de pregrado de psicología.
DOI: 10.6084/m9.figshare.11671407.v1
title: Supplementary Material for: Recovery of Dementia Syndrome following Treatment of Brain Inflammation

description: <b><i>Aim/Background:</i></b> This research aims to prevent progression from mild cognitive impairment (MCI) to Alzheimer’s disease. A Japanese study of leprosy patients revealed that the incidence of dementia in leprosy patients was lower than that in patients taking dapsone who had never been treated. But a similar study the following year refuted the finding of less dementia in leprosy patients taking dapsone. According to conflicting reports, <i>Mycobacterium leprae</i> was a factor in reducing the incidence of Alzheimer’s disease. Thus, we formed a hypothesis that if dapsone is administered to patients without leprosy but with MCI and the prophylactic effect of dementia syndrome is observed over a long period of time, we can determine whether dapsone can prevent the progression of MCI to dementia syndrome. If dementia does not occur after treating inflammation in brain cells while dementia develops after a certain long-term period (usually within 2–3 years), brain cell inflammation can be demonstrated as the cause of dementia. <b><i>Methods:</i></b> This is a prospective cohort research. We report on an elderly patient diagnosed with MCI from February 2008 to January 2019. The patient took dapsone 100 mg once a day from 2010 to 2015 for the treatment of MCI. Since 2016, the production of dapsone has ceased in Korea. In June 2018, the patient was diagnosed with Alzheimer’s disease. The patient took Aricept for the treatment of Alzheimer’s disease but complained of serious side effects. And dapsone was re-administered to the patient from November 2018. <b><i>Results:</i></b> The patient recovered to MCI and improved her daily life owing to the treatment with dapsone. The drug controls the inflammatory response in the brain, irrespective of whether proteins are deposited in neurons. <b><i>Conclusions:</i></b>This finding means that dementia syndrome is an inflammatory disease. This research suggests that diagnostic criteria for Alzheimer’s disease should be based on the presence or absence of inflammation in neurons. Because inflammation in neurons can occur in middle age due to various causes, we can treat inflammation in neurons and prevent and treat dementia syndrome, including Alzheimer’s disease.
DOI: 10.6084/m9.figshare.15169656.v1
title: R code for analyses

description: R code for analyses
DOI: 10.6084/m9.figshare.5924110.v6
title: PA SHT98 Paper Raw Data YHSay

description: Raw data for the paper <b>"Palmitic acid induces neurotoxicity and gliatoxicity in SH-SY5Y human neuroblastoma and T98G human glioblastoma cells" </b>
DOI: 10.6084/m9.figshare.7677968.v1
title: SIMULTANEOUS PRODUCTION OF BIOSURFACTANTS AND LIPASES FROM Aspergillus niger AND OPTIMIZATION BY RESPONSE SURFACE METHODOLOGY AND DESIRABILITY FUNCTIONS

description: Abstract Microbial conversion for the synthesis of high added-value compounds, such as biosurfactants and lipases, is one of the most promising fields within the biotechnology industry, given its current development. In this study the simultaneous production of biosurfactants and lipases by Aspergillus niger in a submerged bioprocess was analyzed. Full Factorial Design (23) was conducted to assess the influence of the malt extract (g·L-1; 25, 50, 75) and soybean oil concentrations (% v/v; 0.0, 1.25, 2.5) and agitation rates (rpm; 0.0, 100, 200) on biosurfactant and lipase production. Higher levels of the factors favored microbial growth, while their lower levels favored the production of biosurfactants and lipases. The variables were optimized through the response surface methodology and desirability functions, obtaining simultaneous maximized values of 0.48 g·L-1 (biomass); 42.03% (EAw/o);2.17 UE (EAw/o) and 3.28 U (LA). This indicates the possibility of combined biosurfactant and lipase production.
DOI: 10.17632/ssny74xv48
title: JLW-FM-DB_samples

description: This is a sub database of JLW-FM-DB. It contains 200 signed fingermarks and 200 unsigned fingermarks. Each sub dataset contains 100 genuine fingermarks and 100 fake fingermarks. The fake fingerprint materials include wood glue, conductive silicone, skin color silicone, clear silicone and fingerprint seal.
DOI: 10.6084/m9.figshare.14748465.v1
title: Supplementary Material for: Successful Endoscopic Retrieval of a Retained Fractured Guidewire from the Main Pancreatic Duct

description: Medicine
DOI: 10.6084/m9.figshare.20255094.v1
title: 00_alignment_output.tar.gz

description: Bulk and single cell RNA-seq quantification results
DOI: 10.6084/m9.figshare.28582289.v2
title: circRNA and mRNA transcriptome sequencing data from OVA-induced mouse lung tissue

description: <b>Chronic Allergic Pulmonary Inflammation Model</b>The male C57BL/6J mice utilized in this study were six weeks old, weighed 22±2 grams.The mice were allocated into four distinct groups, each consisting of six animals: the control group, the asthma group, the exercise group, and the asthma + exercise group. The asthma group and asthma+ exercise group were administered aluminum hydroxide-diluted OVA at a dose of 10 μg per mouse via intraperitoneal injection on days 0, 14, 28, and 42, following a previously established protocol. From day 21 to day 54, the mice in these groups were exposed to a 1% OVA aerosol for 30 minutes, three times per week. In contrast, the mice in the control group and the exercise group were exposed to saline under the same conditions. Mice are anesthetized with 1% pentobarbital sodium via intraperitoneal injection. Euthanasia is performed by tail vein injection of a 3% pentobarbital sodium solution.<b>RNA Sequencing</b>Shanghai Biotechnology Corporation conducted the RNA microarray analysis. Total RNA was extracted from the lung tissues of three OVA-induced mice and three healthy control mice via the RNeasy Mini Kit (Qiagen). For RNA-seq, strand-specific libraries were prepared via the TruSeq Stranded Total RNA Sample Preparation Kit (Illumina). the samples were quantified via a Qubit 2.0 fluorometer (Life Technologies), and the insert size was verified via a 2100 Bioanalyzer (Agilent). Following the dilution of the library to 10 pM, clustering was achieved via cBot, and sequencing was conducted on the Illumina NovaSeq 6000 platform. Shanghai Biotechnology Corporation was responsible for both library construction and sequencing.
DOI: 10.17632/hn2cy35wxh
title: SEM images: cut resistance of climbing ropes

description: The dataset consists of over 1500 raw images from scanning electron microscopy of broken nylon 6 fibers. Fibers were taken from climbing ropes after undergoing laboratory cut resistance tests and an accident simulation. 
The images are divided into folders by: 
1) test type: Accident simulation, Edelrid test, Elmenzwick test, and UIAA 101 Sharp Edge test
2) the type of rope and the location in its cross-section from which the images were taken. 

The fiber fractography revealed four main failure modes. These failure modes included lateral pressure with high-stress concentration, lateral pressure with low-stress concentration, high-speed tensile break, and molten and fused fiber ends. In isolated cases, ductile breaks were found. None of the laboratory test methods could comprehensively mimic the overall breaking mechanism of the accident simulation.
DOI: 10.17632/kkf9w5p2fs
title: Low-cost stopped-flow and freeze-quench device for double mixing

description: Open source, low-costs device combining the freeze-quench and stopped-flow methods, so that they could be used simultaneously in one experiment. Moreover the device allowesth sequential mixing of three solutions with a relatively low consumption of reagents. The repository is associated with the manuscript with the same title.
DOI: 10.6084/m9.figshare.13577840.v6
title: SUFI

description: Example dataset for SUFI: An automated approach to spectral unmixing of fluorescent images
DOI: 10.6084/m9.figshare.14805735.v1
title: Supplementary Material for: Early Renal Ultrasound in Congenital Solitary Kidney May Help to Select Patients at Lower Risk of Associated Vesicoureteral Reflux

description: <b><i>Background:</i></b> Vesicoureteral reflux (VUR) may be associated with renal dysplasia and reduced renal length (RL). The diagnosis of VUR in children with congenital solitary functioning kidney (CSFK) identifies patients at risk of kidney injury but exposes to invasive procedures. <b><i>Objective:</i></b> We aimed to test the hypothesis that an RL &gt;2 standard deviation score (SDS) in the first months of life – reflecting renal hyperplasia – could identify CSFK patients with lower probability of presenting VUR. <b><i>Method:</i></b> We retrospectively selected 207 CSFK patients with prenatal diagnosis of CSFK and having undergone renal ultrasound (RUS) both at 0–3 and 10–13 months of life, renal scintigraphy, and cystourethrography/cysto­scintigraphy. We compared the cumulative proportion of an RL &gt;2 SDS by Kaplan-Meier analysis and evaluated the odds to present VUR of patients with an RL &gt;2 SDS both at the first and second RUS. <b><i>Results:</i></b> Overall, 3.3% of patients with VUR and 22.0% of patients without VUR presented an RL &gt;2 SDS at the first RUS (<i>p</i> = 0.02). At the second RUS, 53.3% of patients with VUR and 52.5% of patients without VUR presented an RL &gt;2 SDS (<i>p</i> = 0.93). Patients without VUR presented higher cumulative proportion of an RL &gt;2 SDS at 3 months of life than those with VUR (<i>p</i> = 0.02). This difference however disappeared at 11 and 13 months of age (<i>p</i> = 0.17 and <i>p</i> = 0.54, respectively). An RL &gt;2 SDS within 3 months of life presented an OR for VUR of 0.12 (95% CI: 0.02–0.92; <i>p</i> = 0.005), while an RL &gt;2 SDS at 12 months of life presented an OR for VUR of 0.96 (95% CI: 0.45–2.1; <i>p</i> = 0.93). <b><i>Conclusion:</i></b> Only an RUS made in the first months of life could identify CSFK patients at lower risk of presenting an associated VUR.
DOI: 10.6084/m9.figshare.24907428.v7
title: <b>Correlation of Prolonged Sitting Time and Sitting Posture on Low Back Pain: A Cross-Sectional Study among Medical Students at Universitas Sumatera Utara</b>

description: Background: Low Back Pain (LBP) is the most common musculoskeletal disorder in the world. Medical students, particularly those who use computers for study purposes, are more vulnerable to LBP due to prolonged sitting times and improper sitting posture during lectures. However, prior research showed that the prevalence of LBP among medical students appeared lower when they were enrolled during online pandemic learning. Hence, this research is performed to determine the correlation between the duration of sitting and sitting posture on the incidence of LBP among medical students in Universitas Sumatera Utara, Indonesia. Methods: A cross-sectional study with an analytical descriptive design was conducted in September 2023 among randomly selected 147 medical students at Universitas Sumatera Utara, Indonesia. The inclusion criteria of the research sample are students with BMI&lt; 23 kg/m2 while the exclusion criteria are students who have abnormalities and a history of trauma or spinal fractures. Data was obtained from filling out questionnaires of The Pain and Distress Scale (PAD) and Body Awareness of Postural Habit in Young People (BAPHY). A Chi-square test and logistic regression were used to analyze data with a p-value &lt; 0.05 was regarded as statistically significant. Results: The study's findings revealed that 40.1% of students reported having LBP problems, 72.1% reported sitting for more than seven hours each day, and 33.3% reported having a bad sitting posture. Chi-square analysis revealed a significant correlation between sitting duration and posture on complaints of lower back pain (RR = 1.69, p = 0.041 and RR = 1.69, p = 0.009). At a risk of 2,438 times, sitting posture is the main factor contributing to LBP among medical students at Universitas Sumatera Utara, Indonesia. Conclusions: This research showed a significant correlation between duration and sitting posture on the incidence of low back pain.
DOI: 10.6084/m9.figshare.26379448.v1
title: La passerelle reliant le traumatisme au trouble de la personnalité borderline chez les victimes d’abus sexuel à l’adolescence

description: l'objectif de cette étude est de définir un profil permettant d'améliorer l'identification des adolescents victimes de violences sexuelles aux urgences pédiatriques, et donc intervenir le plutôt possible aux près de ces jeunes en leur apportant le soutien nécessaire.
DOI: 10.6084/m9.figshare.29149943.v1
title: NSL_Binary.csv

description: The <b>NSL-KDD</b> dataset is an enhanced version of the widely used KDD’99 dataset, developed to benchmark intrusion detection systems. It addresses several inherent flaws in the original KDD’99, such as redundant records and data imbalance, which could bias machine learning models.
DOI: 10.6084/m9.figshare.6605237.v1
title: SummaryComputationsFiles4Upload from Inflation versus filling-in: why we feel we see more than we actually do in peripheral vision

description: This folder contains the data & code for Experiment 2
DOI: 10.6084/m9.figshare.7333835.v1
title: Supplementary Material for: The Impact of Midodrine on Outcomes in Patients with Intradialytic Hypotension

description: <b><i>Background:</i></b> Intradialytic hypotension (IDH) is a frequent complication of hemodialysis, and is associated with significant morbidity and mortality. Off-label use of the alpha-1 andrenergic receptor agonist midodrine to reduce the frequency and severity of IDH is common. However, limited data exist to support this practice. This study sought to examine real-world efficacy of midodrine with respect to relevant clinical and hemodynamic outcomes. <b><i>Methods:</i></b> Here, we compared a variety of clinical and hemodynamic outcomes among adult patients who were prescribed midodrine (<i>n</i> = 1,046) and matched controls (<i>n</i> = 2,037), all of whom were receiving in-center hemodialysis treatment at dialysis facilities in the United States (July 2015 – September 2016). Mortality, all-cause hospitalization, cardiovascular hospitalization, and hemodynamic outcomes were considered from the month following the initiation of midodrine (or corresponding month for controls) until censoring for discontinuation of dialysis, transplant, loss to follow-up, or study end (September 30, 2016). Rate outcomes were compared using Poisson models and quantitative outcomes using linear mixed models; all models were adjusted for imbalanced patient characteristics. <b><i>Results:</i></b> Compared to non-use, midodrine use was associated with higher rates of death (adjusted incidence rate ratio 1.37, 95% CI 1.15–1.62), all-cause hospitalization (1.31, 1.19–1.43) and cardiovascular hospitalization (1.41, 1.17–1.71). During follow-up, midodrine use tended to be associated with lower pre-dialysis systolic blood pressure (SBP), lower nadir SBP, greater fall in SBP during dialysis, and a greater proportion of treatments affected by IDH. <b><i>Conclusion:</i></b> Although residual confounding may have influenced the results, the associations observed here are not consistent with a potent beneficial effect of midodrine with respect to either clinical or hemodynamic outcomes.
DOI: 10.6084/m9.figshare.15104778.v1
title: Supplementary Material for: Person-Centred Dementia Care in an Acute Hospital: Experiences from Nurses Working in a Specialized Dementia Unit

description: <b><i>Background:</i></b> Person-centred care (PCC) is synonymous with best practice in the care of persons with dementia. However, the research focus has been in long-term care settings with less attention in acute hospitals. We aimed to study the perspectives and experiences of nurses implementing PCC in an acute hospital dementia unit (Care for Acute Mentally Infirm Elders [CAMIE]). <b><i>Method:</i></b> This was an exploratory qualitative study involving individual, face-to-face, semi-structured in-depth interviews. A purposive sample of 10 nurses participated in the interview. We employed an inductive thematic analysis approach to analyse the qualitative data. <b><i>Results:</i></b> The findings highlighted the positive experiences, for example, meaningful connection with patients and the challenges, for example, managing challenging behaviour in providing PCC. The initial challenges were due to a lack of prior knowledge and experience. Through formal and informal learning, the nurses built confidence and competence, and also provided support to one other. They emphasized the importance of teamwork and camaraderie in the CAMIE team but raised concerns about the negative perceptions of non-CAMIE nurses on the value of their work. <b><i>Conclusion:</i></b> Despite the challenges, adequate knowledge and robust organizational level support are the key support for nurses to embrace PCC as their care ethos in the acute care setting.