cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5211256
title: http://www.aes.org/e-lib/browse.cfm?elib=19754

description: Recent progresses made in the nonlinear system identification field have improved the ability to emulate nonlinear audio systems such as tube guitar amplifiers. As a straightforward comparison of different models cannot always be made, we propose a new reference dataset enabling to highlight the strengths and weaknesses of different nonlinear modeling methods. Our dataset gathers five different styles of guitar sounds passing through different guitar amplifiers with 10 steps of their gain parameter (i.e. the distortion level of the amplifier). Moreover, a Matlab function is also provided to obtain the desired input/output sounds in a matrix form. Full paper is available : http://www.aes.org/e-lib/browse.cfm?elib=19754
DOI: 10.5281/zenodo.5211537
title: CT Images from the APOLLO-5-LSCC study for Body Part Regression Tutorial

description: The dataset includes CT images from the APOLLO-5-LSCC study for a tutorial from the Body Part Regression python package. The CT images are saved in the npy-format. Moreover, an additional Excel file exists, which saves for each image the corresponding pixel spacings in x, y and z-direction. The original data was generated by the Applied Proteogenomics OrganizationaL Learning and Outcomes (APOLLO) Research Network, a Federal Precision Oncology and Cancer Moonshot Program of the Department of Defense, Department of Veterans Affairs, and National Cancer Institute.
description: {"references": ["Applied Proteogenomics OrganizationaL Learning and Outcomes (APOLLO) Research Network. (2021). Data from the Applied Proteogenomics OrganizationaL Learning and Outcomes Lung Squamous Cell Carcinoma [APOLLO-5-LSCC] Collection [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.QQ0G-EB24", "Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057."]}
DOI: 10.5281/zenodo.5211536
title: CT Images from the APOLLO-5-LSCC study for Body Part Regression Tutorial

description: The dataset includes CT images from the APOLLO-5-LSCC study for a tutorial from the Body Part Regression python package. The CT images are saved in the npy-format. Moreover, an additional Excel file exists, which saves for each image the corresponding pixel spacings in x, y and z-direction. The original data was generated by the Applied Proteogenomics OrganizationaL Learning and Outcomes (APOLLO) Research Network, a Federal Precision Oncology and Cancer Moonshot Program of the Department of Defense, Department of Veterans Affairs, and National Cancer Institute.
description: {"references": ["Applied Proteogenomics OrganizationaL Learning and Outcomes (APOLLO) Research Network. (2021). Data from the Applied Proteogenomics OrganizationaL Learning and Outcomes Lung Squamous Cell Carcinoma [APOLLO-5-LSCC] Collection [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.QQ0G-EB24", "Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057."]}
DOI: 10.34740/kaggle/dsv/2533782
title: 2021 World Population (updated daily)
DOI: 10.17028/rd.lboro.15179892.v1
title: Supplementary Information Files for Development of a hollow fibre-based renal module for active transport studies

description: Supplementary Information Files for Development of a hollow fibre-based renal module for active transport studies<br>Understanding the active transport of substrates by the kidney in the renal proximal convoluted tubule is crucial for drug development and for studying kidney diseases. Currently, cell-based assays are applied for this this purpose, however, diferences between assays and the body are common, indicating the importance of in vitro–in vivo discrepancies. Several studies have suggested that 3D cell cultures expose cells to a more physiological environments, thus, providing more accurate cell function results. To mimic the renal proximal tubule, we have developed a custom-made renal module (RM), containing a single polypropylene hollow fbre (Plasmaphan P1LX, 3M) that serves as a porous scafold and compared to conventional Transwell cell-based bidirectional transport studies. In addition, a constant fow of media, exposed cells to a physiological shear stress of 0.2 dyne/cm2 . MDCK-Mdr1a cells, overexpressing the rat Mdr1a (P-gp) transporter, were seeded onto the HF membrane surface coated with the basement membrane matrix Geltrex which facilitated cell adhesion and tight junction formation. Cells were then seeded into the HF lumen where attachment and tight junction formation were evaluated by fuorescence microscopy while epithelial barrier integrity under shear stress was shown to be achieved by day 7. qPCR results have shown signifcant changes in gene expression compared to cells grown on Transwells. Kidney injury marker such as KIM-1 and the hypoxia marker CA9 have been downregulated, while the CD133 (Prominin-1) microvilli marker has shown a fvefold upregulation. Furthermore, the renal transporter P-gp expression has been downregulated by 50%. Finally, bidirectional assays have shown that cells grown in the RM were able to reabsorb albumin with a higher efciency compared to Transwell cell cultures while efux of the P-gp-specifc substrates Hoechst and Rhodamine 123 was decreased. These results further support the efect of the microenvironment and fuidic shear stress on cell function and gene expression. This can serve as the basis for the development of a microphysiological renal model for drug transport studies.<br>
DOI: 10.17028/rd.lboro.15179892
title: Supplementary Information Files for Development of a hollow fibre-based renal module for active transport studies

description: Supplementary Information Files for Development of a hollow fibre-based renal module for active transport studies<br>Understanding the active transport of substrates by the kidney in the renal proximal convoluted tubule is crucial for drug development and for studying kidney diseases. Currently, cell-based assays are applied for this this purpose, however, diferences between assays and the body are common, indicating the importance of in vitro–in vivo discrepancies. Several studies have suggested that 3D cell cultures expose cells to a more physiological environments, thus, providing more accurate cell function results. To mimic the renal proximal tubule, we have developed a custom-made renal module (RM), containing a single polypropylene hollow fbre (Plasmaphan P1LX, 3M) that serves as a porous scafold and compared to conventional Transwell cell-based bidirectional transport studies. In addition, a constant fow of media, exposed cells to a physiological shear stress of 0.2 dyne/cm2 . MDCK-Mdr1a cells, overexpressing the rat Mdr1a (P-gp) transporter, were seeded onto the HF membrane surface coated with the basement membrane matrix Geltrex which facilitated cell adhesion and tight junction formation. Cells were then seeded into the HF lumen where attachment and tight junction formation were evaluated by fuorescence microscopy while epithelial barrier integrity under shear stress was shown to be achieved by day 7. qPCR results have shown signifcant changes in gene expression compared to cells grown on Transwells. Kidney injury marker such as KIM-1 and the hypoxia marker CA9 have been downregulated, while the CD133 (Prominin-1) microvilli marker has shown a fvefold upregulation. Furthermore, the renal transporter P-gp expression has been downregulated by 50%. Finally, bidirectional assays have shown that cells grown in the RM were able to reabsorb albumin with a higher efciency compared to Transwell cell cultures while efux of the P-gp-specifc substrates Hoechst and Rhodamine 123 was decreased. These results further support the efect of the microenvironment and fuidic shear stress on cell function and gene expression. This can serve as the basis for the development of a microphysiological renal model for drug transport studies.<br>
DOI: 10.34740/kaggle/dsv/2533814
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.5281/zenodo.5211296
title: SLoClas: A Database for Joint Sound Localization and Classification

description: We present a new database namely Sound Localization and Classification (SLoClas) corpus, for studying and analyzing sound localization and classification. The corpus contains a total of 23.27 hours of data recorded using a 4-channel microphone array. 10 classes of sounds are played over a loudspeaker at 1.5 meters distance from the array by varying the DoA from 1 degree to 360 degree at an interval of 5 degree. To facilitate the study of noise robustness, 6 types of outdoor noise are recorded at 4 DoAs, using the same devices. We release this database for research purpose only. If you use this corpus, cite the following paper Qian Xinyuan, Bidisha Sharma, Amine El Abridi, and Haizhou Li. "SLoClas: A Database for Joint Sound Localization and Classification." <em>arXiv preprint arXiv:2108.02539</em> (2021).
DOI: 10.5281/zenodo.5211295
title: SLoClas: A Database for Joint Sound Localization and Classification

description: We present a new database namely Sound Localization and Classification (SLoClas) corpus, for studying and analyzing sound localization and classification. The corpus contains a total of 23.27 hours of data recorded using a 4-channel microphone array. 10 classes of sounds are played over a loudspeaker at 1.5 meters distance from the array by varying the DoA from 1 degree to 360 degree at an interval of 5 degree. To facilitate the study of noise robustness, 6 types of outdoor noise are recorded at 4 DoAs, using the same devices. We release this database for research purpose only. If you use this corpus, cite the following paper Qian Xinyuan, Bidisha Sharma, Amine El Abridi, and Haizhou Li. "SLoClas: A Database for Joint Sound Localization and Classification." <em>arXiv preprint arXiv:2108.02539</em> (2021).
DOI: 10.6084/m9.figshare.15179955
title: Datos y contexto bibliométricos elaborados en el proyecto

description: Datos generados a partir del análisis realizado en MaxQDA, alrededor de las 69 publicaciones analizadas en el proyecto
DOI: 10.6084/m9.figshare.15179955.v1
title: Datos y contexto bibliométricos elaborados en el proyecto

description: Datos generados a partir del análisis realizado en MaxQDA, alrededor de las 69 publicaciones analizadas en el proyecto
DOI: 10.15468/ew9akc
title: Catalogue of the Alucitoidea of the World

description: This GSD is derived from C. Gielis (2003) Pterophoroidea & Alucitoidea (Lepidoptera) (World Catalogue of Insects, volume 4). The database has been edited for inclusion in the Catalogue of Life and updated by Donald Hobern. A current version of the dataset is presented as a web document at https://alucitoidea.hobern.net/. Version 1.0 includes updates to reflect recent changes in taxonomy and new species.
DOI: 10.6084/m9.figshare.15168246
title: iTRAQ_HZC_MP+MPM+ASP+ASPM_20170920_Pepti....txt

description: Samples from HCT116 Mock cells were labeled with iTRAQ tag 117, samples from HCT116-MAGP2<sup>OVE</sup> cells were labeled with iTRAQ tag 118, samples from HCT116 As-uPAR cells were labeled with iTRAQ tag 119 and samples from HCT116 As-uPAR+MAGP2<sup>OVE</sup> cells were labeled with iTRAQ tag 121.
DOI: 10.6084/m9.figshare.15168246.v1
title: iTRAQ_HZC_MP+MPM+ASP+ASPM_20170920_Pepti....txt

description: Samples from HCT116 Mock cells were labeled with iTRAQ tag 117, samples from HCT116-MAGP2<sup>OVE</sup> cells were labeled with iTRAQ tag 118, samples from HCT116 As-uPAR cells were labeled with iTRAQ tag 119 and samples from HCT116 As-uPAR+MAGP2<sup>OVE</sup> cells were labeled with iTRAQ tag 121.
DOI: 10.15468/d9u533
title: Catalogue of the Pterophoroidea of the World

description: This GSD is derived from C. Gielis (2003) Pterophoroidea & Alucitoidea (Lepidoptera) (World Catalogue of Insects, volume 4). The database has been edited for inclusion in the Catalogue of Life and updated by Donald Hobern. A current version of the dataset is presented as a web document at https://Pterophoroidea.hobern.net/. Version 1.0 includes updates to reflect recent changes in taxonomy and new species.
DOI: 10.5281/zenodo.3402201
title: Refining Bulk Segregant Analyses: Ontology-Mediated Discovery of Flowering Time Genes in Brassica oleracea

description: This record comprises the main supplement to study 10.1101/2021.08.11.455982. Contained in the archive identified by this record are the following files: SUPPLEMENTARY_METHODS.pdf contains an extended description of the methods of the study, including external links to raw, intermediate, and result data st[1-5]_* supplementary tables referenced in the main manuscript body of the study *.zip files contain intermediate data archives referenced in the supplementary methods, *.txt files with the same names list the contents of the zip files go-basic.obo is an unmodified copy of the Gene Ontology (in OBO format) as used in this study <strong>NOTE 1</strong>: this record contains additional references (related identifiers) that identify all other data and source code used in this study <strong>NOTE 2</strong>: for this record and all related records, the authors, their affiliations and their respective funding as relevant to this project are identified in the main manuscript, whose contents take precedence over equivalent metadata fields in supplementary records.
DOI: 10.5281/zenodo.3402200
title: Refining Bulk Segregant Analyses: Ontology-Mediated Discovery of Flowering Time Genes in Brassica oleracea

description: This record comprises the main supplement to study 10.1101/2021.08.11.455982. Contained in the archive identified by this record are the following files: SUPPLEMENTARY_METHODS.pdf contains an extended description of the methods of the study, including external links to raw, intermediate, and result data st[1-5]_* supplementary tables referenced in the main manuscript body of the study *.zip files contain intermediate data archives referenced in the supplementary methods, *.txt files with the same names list the contents of the zip files go-basic.obo is an unmodified copy of the Gene Ontology (in OBO format) as used in this study <strong>NOTE 1</strong>: this record contains additional references (related identifiers) that identify all other data and source code used in this study <strong>NOTE 2</strong>: for this record and all related records, the authors, their affiliations and their respective funding as relevant to this project are identified in the main manuscript, whose contents take precedence over equivalent metadata fields in supplementary records.
DOI: 10.4119/unibi/2956788
title: Pitaya transcriptome assemblies and investigation of transcript abundances II

description: The RNA-Seq dataset PRJNA627818 was re-analysed to check findings reported in the corresponding publication. RNA-Seq reads were trimmed with Trimmomatic (Bolger et al., 2014) and assembled with Trinity (Grabher et al., 2011). Encoded peptide sequences were predicted and functionally annotated using a previously developed approach (Haak et al., 2018). kallisto (Bray et al., 2016) was applied to estimate the abundance of transcripts based on transcriptome assemblies of three pitaya species and the raw RNA-Seq reads. Please see our corresponding manuscript for details.
DOI: 10.6084/m9.figshare.15179997
title: Datos y contexto bibliométricos elaborados en el proyecto

description: Datos bibliométricos generados de los 69 artículos publicados en el proyecto.
DOI: 10.6084/m9.figshare.15179997.v1
title: Datos y contexto bibliométricos elaborados en el proyecto

description: Datos bibliométricos generados de los 69 artículos publicados en el proyecto.
DOI: 10.17028/rd.lboro.15179952
title: Supplementary Information files for Deliberating our frames: How members of multi-stakeholder initiatives use shared frames to tackle within-frame conflicts over sustainability issues

description: Supplementary Information files for Deliberating our frames: How members of multi-stakeholder initiatives use shared frames to tackle within-frame conflicts over sustainability issues<br>Multi-stakeholder initiatives (MSIs) have been praised as vehicles for tackling complex sustainability issues, but their success relies on the reconciliation of stakeholders’ divergent perspectives. We yet lack a thorough understanding of the micro-level mechanisms by which stakeholders can deal with these differences. To develop such understanding, we examine what frames - i.e., mental schemata for making sense of the world - members of MSIs use during their discussions on sustainability questions and how these frames are deliberated through social interactions. Whilst prior framing research has focussed on between-frame conflicts, we offer a different perspective by examining how and under what conditions actors use shared frames to tackle ‘within-frame conflicts’ on views that stand in the way of joint decisions. Observations of a deliberative environmental valuation workshop and interviews in an MSI on the protection of peatlands - ecosystems that contribute to carbon retention on a global scale – demonstrated how the application and deliberation of shared frames during micro-level interactions resulted in increased salience, elaboration, and adjustment of shared frames. We interpret our findings to identify characteristics of deliberation mechanisms in the case of within-frame conflicts where shared frames dominate the discussions, and to delineate conditions for such dominance. Our findings contribute to an understanding of collaborations in MSIs and other organisational settings by demonstrating the utility of shared frames for dealing with conflicting views and suggesting how shared frames can be activated, fostered and strengthened.<br>
DOI: 10.17028/rd.lboro.15179952.v1
title: Supplementary Information files for Deliberating our frames: How members of multi-stakeholder initiatives use shared frames to tackle within-frame conflicts over sustainability issues

description: Supplementary Information files for Deliberating our frames: How members of multi-stakeholder initiatives use shared frames to tackle within-frame conflicts over sustainability issues<br>Multi-stakeholder initiatives (MSIs) have been praised as vehicles for tackling complex sustainability issues, but their success relies on the reconciliation of stakeholders’ divergent perspectives. We yet lack a thorough understanding of the micro-level mechanisms by which stakeholders can deal with these differences. To develop such understanding, we examine what frames - i.e., mental schemata for making sense of the world - members of MSIs use during their discussions on sustainability questions and how these frames are deliberated through social interactions. Whilst prior framing research has focussed on between-frame conflicts, we offer a different perspective by examining how and under what conditions actors use shared frames to tackle ‘within-frame conflicts’ on views that stand in the way of joint decisions. Observations of a deliberative environmental valuation workshop and interviews in an MSI on the protection of peatlands - ecosystems that contribute to carbon retention on a global scale – demonstrated how the application and deliberation of shared frames during micro-level interactions resulted in increased salience, elaboration, and adjustment of shared frames. We interpret our findings to identify characteristics of deliberation mechanisms in the case of within-frame conflicts where shared frames dominate the discussions, and to delineate conditions for such dominance. Our findings contribute to an understanding of collaborations in MSIs and other organisational settings by demonstrating the utility of shared frames for dealing with conflicting views and suggesting how shared frames can be activated, fostered and strengthened.<br>
DOI: 10.5281/zenodo.5211585
title: Tracking cells in Xenopus tissue with TrackMate-MorphoLibJ

description: Tracking cells in Xenopus tissue with TrackMate-MorphoLibJ. For more details see https://imagej.net/plugins/trackmate/trackmate-morpholibj Image courtesy of Jakub Sedzinski.
DOI: 10.5281/zenodo.5211584
title: Tracking cells in Xenopus tissue with TrackMate-MorphoLibJ

description: Tracking cells in Xenopus tissue with TrackMate-MorphoLibJ. For more details see https://imagej.net/plugins/trackmate/trackmate-morpholibj Image courtesy of Jakub Sedzinski.
DOI: 10.5525/gla.researchdata.1152
title: Intervening on hypertension in Zambia; development of a culturally sensitized lifestyle programme to reduce disease incidence in urban areas

description: The data is in two parts. Part 1: Qualitative transcripts for the exploration of the context (Focus group discussions and stakeholder interviews) as well as the post intervention qualitative interviews to assess acceptability and feasibility. Part 2: Quantitative data for a before and after design to assess potential effectiveness for the intervention that was developed in the current study. It is presented in excel with two worksheets. The first worksheet includes a description of the variables. The second worksheet has variables in the top column and levels of measurement in the first column.
DOI: 10.6084/m9.figshare.15180024
title: Datos generados a partir del análisis realizado en MaxQDA

description: Datos generados a partir del análisis realizado en MaxQDA, alrededor de las 69 publicaciones analizadas en el proyecto.
DOI: 10.6084/m9.figshare.15180024.v1
title: Datos generados a partir del análisis realizado en MaxQDA

description: Datos generados a partir del análisis realizado en MaxQDA, alrededor de las 69 publicaciones analizadas en el proyecto.
DOI: 10.5281/zenodo.5209001
title: SeBS: A Serverless Benchmark Suite for Function-as-a-Service Computing

description: This upload contains the software prototype, data, analysis scripts, and replication scripts for the paper "SeBS: A Serverless Benchmark Suite for Function-as-a-Service Computing" (ACM/IFIP Middleware 2021). With our artifact we provide the following components: <code>serverless-benchmarks</code> - source code of the benchmark suite <code>data</code> - benchmarking results obtained for the paper <code>analysis</code> - Python plotting and analysis scripts used for data analysis <code>experiments</code> - scripts helping to reproduce the experiments <code>docker</code> - compressed Docker images that were used for our experiments. Our data has been obtained in January 2020, July and August 2020, and November 2020.
DOI: 10.17632/nvgnkfphj9.1
title: mbsolve: An open-source solver tool for the Maxwell-Bloch equations

description: The Maxwell-Bloch equations are a valuable tool to model light-matter interaction, where the application examples range from the description of pulse propagation in two-level media to the elaborate simulation of optoelectronic devices, such as the quantum cascade laser (QCL). In this work, we present mbsolve, an open-source solver tool for the Maxwell-Bloch equations. Here, we consider the one-dimensional Maxwell's equations, which are coupled to the Lindblad equation. The resulting generalized Maxwell-Bloch equations are treated without invoking the rotating wave approximation (RWA). Since this full-wave treatment is computationally intensive, we provide a flexible framework to implement different numerical methods and/or parallelization techniques. On this basis, we offer two solver implementations that use OpenMP for parallelization.