cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21316023
title: Volcanic and sedimentary rocks reveal the Paleozoic tectonic evolution of the Lhasa Terrane, Tibet

description: The central Lhasa Terrane preserves the geological record of the opening, subduction, and closure of the Paleo-Tethys Ocean. However, the early tectonic history of the Paleo-Tethys Ocean remains unclear. Here, we present the results of a systematic study of Paleozoic volcanic-sedimentary rocks of the central Lhasa Terrane. The composition of Paleozoic sandstone includes quartz, potassium feldspar, plagioclase, lithic fragments, and a small amount of sericite. Qt-Ft-Lt Dickinson ternary diagrams reveal that the Paleozoic succession includes feldspatho-litho-quartzose sandstone (Gangsangmu and Yongzhu formations), litho-feldspatho-quartzose sandstone (Lower Laigu and Lower Laga formations), litho-quartzo-feldspathic sandstone (Upper Laigu and Upper Laga formations), and quartzo-litho-feldspathic sandstone (Luobadui formation). The Late Ordovician Gangsangmu formation shows passive margin characteristics controlled by sediment recycling. The Early Carboniferous–Late Carboniferous Yongzhu formation is derived from an evolved arc. The Late Carboniferous Lower Laigu and Lower Laga formations were associated with a passive margin controlled by sediment recycling. The Early Permian (Upper Laga, Upper Laigu, and Luobadui formations) represent active continental margin sedimentary rocks. The Early Permian volcanic rocks (287 ~ 274 Ma) belong to the calc-alkaline -potassic /shoshonitic series with high positive ε<sub>Hf</sub>(t) values. The Early Permian volcanic rocks have high LREE and LILE (e.g. Rb, Sr), and are depleted in HREE and HFSE (e.g. Nb and Ta, Ti), which indicate a subduction-related arc setting. Our findings, combined with previous studies, show that the northern margin of Gondwana was passive in the Late Ordovician. In the Early Carboniferous, a back-arc basin formed on this northern margin due to the subduction of the Paleo-Tethys Ocean. In the Late Carboniferous, the Sumdo Paleo-Tethys Ocean opened, and the southern edge of the central Lhasa Terrane was a passive margin. In the Early Permian, the Sumdo Paleo-Tethys Ocean began its initial northward subducted and formed the arc volcanic rocks on the central Lhasa Terrane.
DOI: 10.6084/m9.figshare.20267351
title: Additional file 2 of PtoNF-YC9-SRMT-PtoRD26 module regulates the high saline tolerance of a triploid poplar

description: Additional file 2. Table S1. The information of Hifi and Hi-C sequencing.
DOI: 10.6084/m9.figshare.10309280
title: MOESM4 of Genome-wide identification and expression analysis of SWEET gene family in Litchi chinensis reveal the involvement of LcSWEET2a/3b in early seed development

description: Additional file 4: Table S2. Primers used for SWEET genes isolation.
DOI: 10.6084/m9.figshare.10309280.v1
title: MOESM4 of Genome-wide identification and expression analysis of SWEET gene family in Litchi chinensis reveal the involvement of LcSWEET2a/3b in early seed development

description: Additional file 4: Table S2. Primers used for SWEET genes isolation.
DOI: 10.5281/zenodo.10679136
title: Images of minirhizotron 11 and 12 during 2022 and 2023 in Schifflange (Luxembourg)
DOI: 10.5281/zenodo.10679137
title: Images of minirhizotron 11 and 12 during 2022 and 2023 in Schifflange (Luxembourg)
DOI: 10.6084/m9.figshare.7160348.v1
title: A structural perspective on the PP-loop ATP pyrophosphatase family

description: Derived from an ancient ATP-hydrolyzing Rossmann-like fold protein, members of the PP-loop ATP pyrophosphatase family feature an absolutely conserved P-loop-like “SxGxDS/T” motif used for binding and presenting ATP for substrate adenylylation (AMPylation). Since the first family member was reported more than 20 years ago, numerous representatives catalyzing very diverse reactions have been characterized both functionally and structurally. The availability of more than 100 high quality structures in the protein data bank provides an excellent opportunity to gain structural insights into the generally conserved catalytic mechanism and the uniqueness of the reactions catalyzed by family members. In this work, we conducted a thorough database search for the PP-loop ATP pyrophosphatase family members, resulting in the most comprehensive and up-to-date collection that includes 18 enzyme families. Structure comparison of representative family members allowed us to identify common structure features in the core catalytic domain, as well as four highly variable regions that define the unique chemistry for each enzyme family. The newly identified enzymes, particularly those from pathogens, warrant further research to enlarge the scope of this ever-expanding and highly diverse enzyme superfamily for use in potential bioengineering and biomedical applications.
DOI: 10.6084/m9.figshare.10309286
title: MOESM5 of Genome-wide identification and expression analysis of SWEET gene family in Litchi chinensis reveal the involvement of LcSWEET2a/3b in early seed development

description: Additional file 5: Table S3. Primers used for RT-qPCR.
DOI: 10.6084/m9.figshare.20267369
title: Additional file 8 of PtoNF-YC9-SRMT-PtoRD26 module regulates the high saline tolerance of a triploid poplar

description: Additional file 8. Table S7. The differential expression genes in SRMT overexpression poplars compared to WT.
DOI: 10.25402/pme.20267655.v1
title: Supplementary Table – Analysis of pharmacogenomic very important pharmacogenomic variants: CYP3A5, ACE, PTGS2 and NAT2 genes in Chinese Bai population

description:   
Table S1 .Basic information of selected VIP variants.
  
Table S2. The differences in genotype frequencies of VIP loci in Bai ethnic and 26 populations after Bonferroni correction.
DOI: 10.6084/m9.figshare.10309286.v1
title: MOESM5 of Genome-wide identification and expression analysis of SWEET gene family in Litchi chinensis reveal the involvement of LcSWEET2a/3b in early seed development

description: Additional file 5: Table S3. Primers used for RT-qPCR.
DOI: 10.6084/m9.figshare.10309292
title: MOESM1 of Characterizing the composition, metabolism and physiological functions of the fatty liver in Rana omeimontis tadpoles

description: Additional file 1. Liver and tail metabolite tables.
DOI: 10.6084/m9.figshare.10309292.v1
title: MOESM1 of Characterizing the composition, metabolism and physiological functions of the fatty liver in Rana omeimontis tadpoles

description: Additional file 1. Liver and tail metabolite tables.
DOI: 10.6084/m9.figshare.10309301
title: MOESM2 of Characterizing the composition, metabolism and physiological functions of the fatty liver in Rana omeimontis tadpoles

description: Additional file 2. Numeric data used in graphs.
DOI: 10.6084/m9.figshare.10309301.v1
title: MOESM2 of Characterizing the composition, metabolism and physiological functions of the fatty liver in Rana omeimontis tadpoles

description: Additional file 2. Numeric data used in graphs.
DOI: 10.6084/m9.figshare.19219086
title: Additional file 2 of Transcriptional regulation of metal metabolism- and nutrient absorption-related genes in Eucalyptus grandis by arbuscular mycorrhizal fungi at different zinc concentrations

description: Additional file 2.
DOI: 10.6084/m9.figshare.19219089.v1
title: Additional file 3 of Transcriptional regulation of metal metabolism- and nutrient absorption-related genes in Eucalyptus grandis by arbuscular mycorrhizal fungi at different zinc concentrations

description: Additional file 3.
DOI: 10.6084/m9.figshare.17125052
title: Metacognitive unawareness of the feedback benefit until the final test is completed

description: This data set is the experimental data used for research.
DOI: 10.6084/m9.figshare.10309304
title: MOESM7 of LOVE ON WINGS, a Dof family protein regulates floral vasculature in Vigna radiata

description: Additional file 7: Table S1. Primers used in this study.
DOI: 10.6084/m9.figshare.19219086.v1
title: Additional file 2 of Transcriptional regulation of metal metabolism- and nutrient absorption-related genes in Eucalyptus grandis by arbuscular mycorrhizal fungi at different zinc concentrations

description: Additional file 2.
DOI: 10.6084/m9.figshare.10309304.v2
title: MOESM7 of LOVE ON WINGS, a Dof family protein regulates floral vasculature in Vigna radiata

description: Additional file 7: Table S1. Primers used in this study.
DOI: 10.6084/m9.figshare.10309304.v1
title: MOESM7 of Love on wings, a Dof family protein regulates floral vasculature in Vigna radiata

description: Additional file 7: Table S1. Primers used in this study.
DOI: 10.6084/m9.figshare.19219080.v1
title: Additional file 1 of Transcriptional regulation of metal metabolism- and nutrient absorption-related genes in Eucalyptus grandis by arbuscular mycorrhizal fungi at different zinc concentrations

description: Additional file 1: Table S1. General information of ZNT transporter genes identified in Eucalyptus grandis. Table S2. Pearson’s correlation analysis on ZNT family genes. Table S3. Pearson’s correlation analysis on COPT/Ctr family genes. Table S4. Pearson’s correlation analysis on YSL family genes. Table S5. Pearson’s correlation analysis on ZIFL family genes. Table S6. Pearson’s correlation analysis on HMA family genes. Table S7. Pearson’s correlation analysis on CE/MTP family genes. Table S8. Pearson’s correlation analysis on PHT family genes. Table S9. Pearson’s correlation analysis on AMT and NRT family genes. Table S10. Pearson’s correlation analysis on Potassium transporters family genes.
DOI: 10.6084/m9.figshare.19219089
title: Additional file 3 of Transcriptional regulation of metal metabolism- and nutrient absorption-related genes in Eucalyptus grandis by arbuscular mycorrhizal fungi at different zinc concentrations

description: Additional file 3.
DOI: 10.6084/m9.figshare.10309319
title: MOESM10 of A transcriptomic profile of topping responsive non-coding RNAs in tobacco roots (Nicotiana tabacum)

description: Additional file 10: Table S6. Summary of expression changes of lncRNAs between topping treatment (TT) and control (CK) group.
DOI: 10.6084/m9.figshare.10309319.v1
title: MOESM10 of A transcriptomic profile of topping responsive non-coding RNAs in tobacco roots (Nicotiana tabacum)

description: Additional file 10: Table S6. Summary of expression changes of lncRNAs between topping treatment (TT) and control (CK) group.
DOI: 10.6084/m9.figshare.10309328
title: MOESM11 of A transcriptomic profile of topping responsive non-coding RNAs in tobacco roots (Nicotiana tabacum)

description: Additional file 11: Table S7. Summary of expression changes of mRNAs between topping treatment (TT) and control (CK) group.
DOI: 10.6084/m9.figshare.10309328.v1
title: MOESM11 of A transcriptomic profile of topping responsive non-coding RNAs in tobacco roots (Nicotiana tabacum)

description: Additional file 11: Table S7. Summary of expression changes of mRNAs between topping treatment (TT) and control (CK) group.
DOI: 10.6084/m9.figshare.10309367
title: MOESM5 of A transcriptomic profile of topping responsive non-coding RNAs in tobacco roots (Nicotiana tabacum)

description: Additional file 5: Table S1. Number of coding and three types of non-coding RNAs identified in other plants.
DOI: 10.6084/m9.figshare.10309367.v1
title: MOESM5 of A transcriptomic profile of topping responsive non-coding RNAs in tobacco roots (Nicotiana tabacum)

description: Additional file 5: Table S1. Number of coding and three types of non-coding RNAs identified in other plants.
DOI: 10.6084/m9.figshare.10309370
title: MOESM6 of A transcriptomic profile of topping responsive non-coding RNAs in tobacco roots (Nicotiana tabacum)

description: Additional file 6: Table S2. Primers used in qRT-PCR for miRNA.
DOI: 10.6084/m9.figshare.10309370.v1
title: MOESM6 of A transcriptomic profile of topping responsive non-coding RNAs in tobacco roots (Nicotiana tabacum)

description: Additional file 6: Table S2. Primers used in qRT-PCR for miRNA.
DOI: 10.6084/m9.figshare.10309379
title: MOESM7 of A transcriptomic profile of topping responsive non-coding RNAs in tobacco roots (Nicotiana tabacum)

description: Additional file 7: Table S3. Primers used in qRT-PCR for mRNA, lncRNA and circRNA.
DOI: 10.6084/m9.figshare.10309379.v1
title: MOESM7 of A transcriptomic profile of topping responsive non-coding RNAs in tobacco roots (Nicotiana tabacum)

description: Additional file 7: Table S3. Primers used in qRT-PCR for mRNA, lncRNA and circRNA.
DOI: 10.6084/m9.figshare.10309385
title: MOESM8 of A transcriptomic profile of topping responsive non-coding RNAs in tobacco roots (Nicotiana tabacum)

description: Additional file 8: Table S4. Summary of expression changes of circRNAs between topping treatment (TT) and control (CK) group.
DOI: 10.6084/m9.figshare.10309385.v1
title: MOESM8 of A transcriptomic profile of topping responsive non-coding RNAs in tobacco roots (Nicotiana tabacum)

description: Additional file 8: Table S4. Summary of expression changes of circRNAs between topping treatment (TT) and control (CK) group.
DOI: 10.6084/m9.figshare.10309391
title: MOESM9 of A transcriptomic profile of topping responsive non-coding RNAs in tobacco roots (Nicotiana tabacum)

description: Additional file 9: Table S5. Summary of expression changes of miRNAs between topping treatment (TT) and control (CK) group.
DOI: 10.6084/m9.figshare.10309391.v1
title: MOESM9 of A transcriptomic profile of topping responsive non-coding RNAs in tobacco roots (Nicotiana tabacum)

description: Additional file 9: Table S5. Summary of expression changes of miRNAs between topping treatment (TT) and control (CK) group.
DOI: 10.6084/m9.figshare.9785243
title: Metadata record for: A data set of global river networks and corresponding water resources zones divisions

description: This dataset contains key characteristics about the data described in the Data Descriptor A data set of global river networks and corresponding water resources zones divisions. <br>
 Contents: <br>
 
 1. human readable metadata summary table in CSV format
 
 
 2. machine readable metadata file in JSON format<br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9785243.v1
title: Metadata record for: A data set of global river networks and corresponding water resources zones divisions

description: This dataset contains key characteristics about the data described in the Data Descriptor A data set of global river networks and corresponding water resources zones divisions. <br>
 Contents: <br>
 
 1. human readable metadata summary table in CSV format
 
 
 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.10309568
title: MOESM1 of NG2 glia regulate brain innate immunity via TGF-β2/TGFBR2 axis

description: Additional file 1: Supplementary figures.
DOI: 10.6084/m9.figshare.10309568.v1
title: MOESM1 of NG2 glia regulate brain innate immunity via TGF-β2/TGFBR2 axis

description: Additional file 1: Supplementary figures.
DOI: 10.6084/m9.figshare.10309607
title: MOESM1 of Construction of the first high-density genetic linkage map and identification of seed yield-related QTLs and candidate genes in Elymus sibiricus, an important forage grass in Qinghai-Tibet Plateau

description: Additional file 1: Table S1. SLAF marker and their locations on each linkage.
DOI: 10.6084/m9.figshare.10309607.v1
title: MOESM1 of Construction of the first high-density genetic linkage map and identification of seed yield-related QTLs and candidate genes in Elymus sibiricus, an important forage grass in Qinghai-Tibet Plateau

description: Additional file 1: Table S1. SLAF marker and their locations on each linkage.
DOI: 10.6084/m9.figshare.10309610
title: MOESM2 of Construction of the first high-density genetic linkage map and identification of seed yield-related QTLs and candidate genes in Elymus sibiricus, an important forage grass in Qinghai-Tibet Plateau

description: Additional file 2: Table S2. Phenotypic data of parents and F2 population in E. sibiricus.
DOI: 10.6084/m9.figshare.10309610.v1
title: MOESM2 of Construction of the first high-density genetic linkage map and identification of seed yield-related QTLs and candidate genes in Elymus sibiricus, an important forage grass in Qinghai-Tibet Plateau

description: Additional file 2: Table S2. Phenotypic data of parents and F2 population in E. sibiricus.
DOI: 10.6084/m9.figshare.10309619
title: MOESM3 of Construction of the first high-density genetic linkage map and identification of seed yield-related QTLs and candidate genes in Elymus sibiricus, an important forage grass in Qinghai-Tibet Plateau

description: Additional file 3: Table S3. Thirty identified candidate genes for seed shattering within six QTL regions based on the functional annotation of barley and wheat genomes.
DOI: 10.6084/m9.figshare.10309619.v1
title: MOESM3 of Construction of the first high-density genetic linkage map and identification of seed yield-related QTLs and candidate genes in Elymus sibiricus, an important forage grass in Qinghai-Tibet Plateau

description: Additional file 3: Table S3. Thirty identified candidate genes for seed shattering within six QTL regions based on the functional annotation of barley and wheat genomes.
DOI: 10.6084/m9.figshare.10309658
title: MOESM10 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 10: Table S9. The detail information of 21 differential genes derived from Fig. 4-B and Fig. 6a.
DOI: 10.6084/m9.figshare.10309658.v1
title: MOESM10 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 10: Table S9. The detail information of 21 differential genes derived from Fig. 4-B and Fig. 6a.
DOI: 10.6084/m9.figshare.10309673
title: MOESM12 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 12: Table S10. KEGG pathway enriched bewteen the SCI and the LV_SCI 127 downregulated genes.
DOI: 10.6084/m9.figshare.10309673.v1
title: MOESM12 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 12: Table S10. KEGG pathway enriched bewteen the SCI and the LV_SCI 127 downregulated genes.
DOI: 10.6084/m9.figshare.10309679
title: MOESM13 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 13: Table S11. KEGG pathway enriched the differentially expressed genes (CON VS SCI upregulated genes).
DOI: 10.6084/m9.figshare.10309679.v1
title: MOESM13 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 13: Table S11. KEGG pathway enriched the differentially expressed genes (CON VS SCI upregulated genes).
DOI: 10.6084/m9.figshare.10309682
title: MOESM14 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 14: Table S12. KEGG pathway enriched the differentially expressed genes (CON VS SCI downregulated genes).
DOI: 10.6084/m9.figshare.10309682.v1
title: MOESM14 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 14: Table S12. KEGG pathway enriched the differentially expressed genes (CON VS SCI downregulated genes).
DOI: 10.6084/m9.figshare.10309715
title: MOESM1 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 1: Table S1. Summary of Illumina’s postsequencing sequence assembly.
DOI: 10.6084/m9.figshare.10309715.v1
title: MOESM1 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 1: Table S1. Summary of Illumina’s postsequencing sequence assembly.
DOI: 10.6084/m9.figshare.21316179
title: Additional file 3 of Establishment of a recombinase polymerase amplification (RPA) fluorescence assay for the detection of swine acute diarrhea syndrome coronavirus (SADS-CoV)

description: Additional file 3: Supplementary Table 1. The detection results of 11 samples by quantitative real-time PCR assays and the RT-PCR system.
DOI: 10.6084/m9.figshare.21316179.v1
title: Additional file 3 of Establishment of a recombinase polymerase amplification (RPA) fluorescence assay for the detection of swine acute diarrhea syndrome coronavirus (SADS-CoV)

description: Additional file 3: Supplementary Table 1. The detection results of 11 samples by quantitative real-time PCR assays and the RT-PCR system.
DOI: 10.6084/m9.figshare.10309718
title: MOESM1 of Correlation of homologous recombination deficiency induced mutational signatures with sensitivity to PARP inhibitors and cytotoxic agents

description: Additional file 1: Table S1. Provides general sequencing statistics. Tables S2 and S3. Contain a catalogue of all detected SNVs and indels, respectively. Table S4. Contains a summary of all detected genetic alterations. Table S5. Provides the numerical values of de novo SNV signatures. Table S6. Contains numerical data for cosine similarity and Pearson correlation values between SNV signatures. Table S7. Lists all detected and post-filtered SVs. Table S8. Provides all measured IC50 doses on all cell lines. Table S9. Lists the sources of all chemotherapeutic drugs used in this study. Table S10. Provides the identifier, genotype, mutation data and SNV signature contributions of analysed TCGA samples. Table S11. Contains a catalogue of all detected coding SNVs in the ancestral clones. Table S12. Contains aggregated indel profiles according to PCAWG nomenclature.
DOI: 10.6084/m9.figshare.10309718.v1
title: MOESM1 of Correlation of homologous recombination deficiency induced mutational signatures with sensitivity to PARP inhibitors and cytotoxic agents

description: Additional file 1: Table S1. Provides general sequencing statistics. Tables S2 and S3. Contain a catalogue of all detected SNVs and indels, respectively. Table S4. Contains a summary of all detected genetic alterations. Table S5. Provides the numerical values of de novo SNV signatures. Table S6. Contains numerical data for cosine similarity and Pearson correlation values between SNV signatures. Table S7. Lists all detected and post-filtered SVs. Table S8. Provides all measured IC50 doses on all cell lines. Table S9. Lists the sources of all chemotherapeutic drugs used in this study. Table S10. Provides the identifier, genotype, mutation data and SNV signature contributions of analysed TCGA samples. Table S11. Contains a catalogue of all detected coding SNVs in the ancestral clones. Table S12. Contains aggregated indel profiles according to PCAWG nomenclature.
DOI: 10.6084/m9.figshare.10309724
title: MOESM2 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 2: Table S2. Mapping results between transcriptome and reference genome.
DOI: 10.6084/m9.figshare.10309724.v1
title: MOESM2 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 2: Table S2. Mapping results between transcriptome and reference genome.
DOI: 10.6084/m9.figshare.25242796.v1
title: Temperature logger data treeline Eastern Alps (Defereggen, Tamangur). Publication by Körner & Hiltbrunner, 2024, Regional Environmental Change

description: On-site temperatures (soil and Air) to describe rapid advance of climatic tree limits (<i>Pinus cembra</i> L.) in the Eastern Alps.
DOI: 10.6084/m9.figshare.10309730
title: MOESM3 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 3: Table S3. List of 210 upregulated DEGs expressed between the SCI group and the LV_SCI group.
DOI: 10.6084/m9.figshare.10309730.v1
title: MOESM3 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 3: Table S3. List of 210 upregulated DEGs expressed between the SCI group and the LV_SCI group.