cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19371821
title: Landmarks and data from sexed Percilia sp.

description: Landmarks and data from sexed individuals from Percilia sp. for the manuscript "Allometric trajectories reveal ontogenic habitat shift in <i>Percilia sp</i>. and its susceptibility to flow alteration."
DOI: 10.6084/m9.figshare.19371821.v1
title: Landmarks and data from sexed Percilia sp.

description: Landmarks and data from sexed individuals from Percilia sp. for the manuscript "Allometric trajectories reveal ontogenic habitat shift in <i>Percilia sp</i>. and its susceptibility to flow alteration."
DOI: 10.6084/m9.figshare.19365567.v1
title: shapes_sex_irwinni_L11

description: Dataset for studying sexual dimorphism of P. irwini
DOI: 10.6084/m9.figshare.19365524.v1
title: genus_comparison_L11

description: Data for genus comparison for the maunuscript: "Allometric trajectories reveal ontogenic habitat shift in Percilia sp. and its susceptibility to flow alteration"
DOI: 10.6084/m9.figshare.19365464
title: Script for "Allometric trajectories reveal ontogenic habitat shift in Percilia sp. and its susceptibility to flow alteration"

description: Script used to generate the results for the manuscripts "Allometric trajectories reveal ontogenic habitat shift in Percilia sp. and its susceptibility to flow alteration"
DOI: 10.6084/m9.figshare.19365464.v1
title: Script for "Allometric trajectories reveal ontogenic habitat shift in Percilia sp. and its susceptibility to flow alteration"

description: Script used to generate the results for the manuscripts "Allometric trajectories reveal ontogenic habitat shift in Percilia sp. and its susceptibility to flow alteration"
DOI: 10.6084/m9.figshare.19365524
title: genus_comparison_L11

description: Data for genus comparison for the maunuscript: "Allometric trajectories reveal ontogenic habitat shift in Percilia sp. and its susceptibility to flow alteration"
DOI: 10.26165/juelich-data/nronv1
title: Data for: Te-doped selective-area grown InAs nanowires for superconducting hybrid devices

description: Two-dimensional map of the Te concentration in an InAs nanowire determined by atom probe tomography from sample J with a tellurium doping concentration of 2 x 10 19 cm-3 .
DOI: 10.7294/19358228
title: Data associated with Antimicrobial susceptibility and risk factors for resistance among Escherichia coli isolated from canine specimens submitted to a diagnostic laboratory in Indiana, 2010-2019

description: Dataset 1 -<b> </b>Raw dataset for bacterial culture and antimicrobial susceptibility data for <i>Escherichia coli</i> isolated from canine specimens_2010-2019.<br>Dataset 2 - Cleaned and dummy coded data for bacterial culture and antimicrobial susceptibility data for <i>Escherichia coli</i> isolated from canine specimens_2010-2019. This dataset was used in the general analyses.<br>Dataset 3 - Dataset used to build the Univariable and multivariable binary logistic regression model of the associations between host factors and antimicrobial resistance among <i>Escherichia coli</i> isolated from samples from Indiana.<br>Dataset 4 - Dataset used to build the univariable logistic regression models assessing the association of host factors with multi-drug resistance among <i>Escherichia coli</i> isolated from dog specimens originating from Indiana.<br>SAS code - SAS CODE for the Multivariable binary logistic regression model of the associations between host factors and antimicrobial resistance among <i>Escherichia coli</i> isolated from samples from Indiana.
DOI: 10.26165/juelich-data/dwabvz
title: AIRS/Aqua observations of stratospheric gravity waves of the January 2022 Hunga Tonga-Hunga Ha'apai volcanic eruption

description: This data repository provides access to infrared satellite observations of stratospheric gravity waves obtained from the Atmospheric Infrared Sounder (AIRS) instrument following the Hunga Tonga-Hunga Ha'apai volcanic eruption on 14-15 January 2022. We provide a 4.3 and 15 micron brightness temperature data product showing gravity wave signals for three height ranges of the stratosphere (20-25 km, 30-40 km, and 40-45 km). As a second data product, we provide high-resolution 3-D stratospheric temperature retrievals conducted with a radiative transfer model and an optimal estimation retrieval scheme.
DOI: 10.5517/ccdc.csd.cc1zydq1
title: CCDC 1845514: Experimental Crystal Structure Determination

description: Related Article: Abdelaziz Arroussi, Hafida Gaffour, Malika Mokhtari, Leila Boukli-Hacene|2020|Int. J. Environ. Stud.|77|137|doi:10.1080/00207233.2019.1584479
DOI: 10.6084/m9.figshare.19372022.v1
title: Nanostring microRNA array in melanoma cells with ADAR1 OX

description: Nanostring microRNA array in melanoma cells (mel624) with ADAR1 overexpression.
DOI: 10.6084/m9.figshare.19372022
title: Nanostring microRNA array in melanoma cells with ADAR1 OX

description: Nanostring microRNA array in melanoma cells (mel624) with ADAR1 overexpression.
DOI: 10.5281/zenodo.6363365
title: Two fish in a pod. Data from a self-sampling pilot program to separate between black hake species in W-Africa

description: Data from self-sampling pilot trial in Senegal and Mauritanian waters where two species of black hake were separated manually onboard fishing vessels and the results then validated by genetic analysis.
DOI: 10.5281/zenodo.6363364
title: Two fish in a pod. Data from a self-sampling pilot program to separate between black hake species in W-Africa

description: Data from self-sampling pilot trial in Senegal and Mauritanian waters where two species of black hake were separated manually onboard fishing vessels and the results then validated by genetic analysis.
DOI: 10.15472/daydgm
title: Plantas medicinales endémicas de Colombia

description: En el grupo de las plantas útiles de Colombia se destacan las especies medicinales que representan el 15% de las plantas con usos terapéuticos registradas para el mundo, y dentro de ellas en este estudio se logró establecer que 204 son endémicas del país, pero son subutilizadas, poco conocidas y varias de ellas están en peligro de extinción. De la literatura disponible sobre plantas medicinales no se conoce que otro país del mundo tenga un número tan alto de plantas medicinales endémicas, y seguro éste es uno de los tesoros naturales escondidos de Colombia que merece ser conocido, preservado, conservado y utilizado de manera sostenible para las presentes y futuras generaciones. Esta investigación tuvo como objetivo principal precisar y actualizar el inventario de las plantas medicinales endémicas de Colombia y revisar cuál es el estado actual de los conocimientos tradicionales, científicos y tecnológicos de este grupo de especies útiles del país. El presente registro corresponde a la revisión y documentación más reciente de las plantas medicinales endémicas de Colombia realizada entre julio de 2021 y febrero de 2022, en la cual se identificaron 437 especies con la posibilidad de ser exclusivas de Colombia, y que de ellas se pudo establecer que en el país existen 204 especies medicinales endémicas, de las cuales 140 son de distribución amplia (presentes en tres o más departamentos) y 64 son de distribución restringida (presentes en un solo sitio del país, uno o dos departamentos). Es muy importante señalar que estas 64 especies de distribución restringida en Colombia presentan distintos grados de amenaza de extinción y sobre ellas se deben priorizar los planes y estrategias nacionales de conservación in situ y ex situ.
DOI: 10.25345/c5m61bt0f
title: MassIVE MSV000089073 - Proteomic changes of osteoclast differentiation in rheumatoid and psoriatic arthritis reveal functional differences
title: Background: Osteoclasts play a crucial role in the maintenance, repair, and remodeling of bones of the adult vertebral skeleton due to their bone resorption capability. Rheumatoid arthritis (RA) and psoriatic arthritis (PsA) are associated with increased activity of osteoclasts. Objectives: Our study aimed to investigate the dynamic proteomic changes during osteoclast differentiation in healthy donors, in RA, and in PsA. Methods: Healthy donors', RA, and PsA patients' blood samples were collected, monocytes were isolated and differentiated into osteoclasts in vitro using M-CSF and RANK-L treatment. Mass Spectrometry based proteomics were used to analyze proteins from cell lysates. The expression changes were analysed with Gene Set Enrichment Analysis (GSEA). Results: The analysis of the proteomic changes revealed that during the differentiation of the human osteoclasts expression of the proteins involved in metabolic activity, secretory function and cell polarity is increased; by contrast signaling pathways involved in the immune functions are downregulated. Interestingly, the differences between cells of healthy donors and RA/PsA patients are most pronounced after the final steps of differentiation to osteoclasts. In addition both in RA and PsA the differentiation is characterized by decreased metabolic activity, associated with various immune pathway activities; furthermore by accelerated cytokine production in RA. Conclusions: Our results shed light to the characteristic proteomic changes during human osteoclast differentiation and expression differences in RA and PsA, which reveal important pathophysiological insights in both diseases.
DOI: 10.25345/c5gf0n05m
title: MassIVE MSV000089074 - Proteome-level characterization of bifunctional peroxidase 4-coumarate 3-hydroxylase knockdown in Brachypodium distachyon provides insights into lignin modification-associated pleiotropic effects
title: A bifunctional peroxidase enzyme, 4-coumarate 3-hydroxylase (C3H/APX), provides a parallel route to the shikimate shunt pathway for the conversion of 4-coumarate to caffeate in the early steps of lignin biosynthesis. Knockdown of C3H/APX (c3h/apx) expression has been shown to reduce the lignin content in Brachypodium distachyon. However, like many other lignin-modified plants, c3h/apx plant shows unpredictable pleiotropic phenotypes, including stunted growth, delayed senescence, and reduced seed yield. A system-wide level understanding of altered biological processes in lignin-modified plants can help pinpoint the lignin-modification associated growth defects to benefit future studies aiming to negate the yield penalty. Here, a global proteomics measurement of the stem tissue of the model grass Brachypodium distachyon was used to investigate the underlying mechanism of c3h/apx-associated lignin modification and negative growth phenotype. Our findings demonstrate that C3H/APX knockdown in Brachypodium stems substantially alters the abundance of enzymes implicated in the phenylpropanoid biosynthetic pathway and disrupt cellular redox homeostasis. Moreover, it elicits plant defense response associated with intracellular kinases and phytohormone-based signaling to facilitate growth-defense trade-offs. A deeper understanding along with potential targets to mitigate the pleiotropic phenotypes identified in this study could aid to increase the economic feasibility of lignocellulosic biofuel production.
DOI: 10.6084/m9.figshare.19372199
title: DATOS DE GENERACIÓN VEHÍCULO ELÉCTRICO

description: in this file you can find the current and irraditation thesis files
DOI: 10.6084/m9.figshare.19372199.v2
title: DATOS DE GENERACIÓN VEHÍCULO ELÉCTRICO

description: in this file you can find the current and irraditation thesis files
DOI: 10.6084/m9.figshare.19372199.v1
title: Untitled Item

description: in this file you can find the current and irraditation thesis files
DOI: 10.5519/qd.c6c9xqxc
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2 records)
DOI: 10.6084/m9.figshare.19372202
title: Data for Damashek et al. 2022 Upper Oconee ARGs manuscript

description: Sheet 1: Gene abundances and sampling information for each DNA sample. Gene abundances are calculated as copies µL DNA<sup>–1</sup>, copies mL<sup>–1</sup> site water, and as a ratio to bacterial 16S rRNA gene abundance. <br><br> Sheet 2: Environmental data at sampling sites. Separate sheets show data and corresponding metadata. Site-linked sewer and septic data are withheld due to privacy concerns.<br> Sheet 3: Correlations between genes. Correlations (Spearman’s<i> </i><i>r</i>, Benjamini-Hochberg corrected <i>p</i>) between genes across the entire dataset.<br>See Damashek et al. (in review) for analyses. Bibliographic information will be published here upon acceptance.<br>
DOI: 10.6073/pasta/ebdab14a08a07434cfc42495bcaf186a
title: Bacterial Production Data for lake and stream samples collected in summer 2012 through 2021, Arctic LTER, Toolik Lake Field Station, Alaska

description: File containing data on bacterial productivity in lakes and streams. Samples were collected at various sites near Toolik Lake Field Station (68 38'N, 149 36'W). Sample site descriptors include an assigned number (sortchem), site, date, time and depth, and bacterial production.
DOI: 10.13026/v5w5-n117
title: Eye Tracking Dataset for the 12-Lead Electrocardiogram Interpretation of Medical Practitioners and Students

description: This dataset contains collected eye tracking data from medical practitioners
and students with different expertise levels to understand their
electrocardiogram interpretation behavior. These medical practitioners
encounter electrocardiograms during their daily medical practice. The end goal
of the collection of this dataset was to use it for analysis to uncover
insights about key best practices as well as pitfall in the ECG interpretation
process. The data consists of quantitative eye tracking measurements for
different eye gaze features for 63 participants. These participants belong to
six expertise categories, namely: medical students, nurses, technicians,
residents, fellows and finally consultants. Each one of these participants
contributed to the data collection by interpreting ten different
electrocardiograms. The eye tracking data includes the eye fixations count and
duration, the eye gaze duration, and finally the fixations revisitations. It
was collected at 60 frames per second using a Tobii Pro X2-60. Each
participant was allowed a timeframe of 30 seconds to interpret each one of the
ten ECGs.  The collected data was processed taking into consideration two
defined area of interest distributions. This enabled the extraction of metrics
specifically tailored for the 12-lead electrocardiogram.
DOI: 10.13026/gsr5-8b11
title: Eye Tracking Dataset for the 12-Lead Electrocardiogram Interpretation of Medical Practitioners and Students

description: This dataset contains collected eye tracking data from medical practitioners
and students with different expertise levels to understand their
electrocardiogram interpretation behavior. These medical practitioners
encounter electrocardiograms during their daily medical practice. The end goal
of the collection of this dataset was to use it for analysis to uncover
insights about key best practices as well as pitfall in the ECG interpretation
process. The data consists of quantitative eye tracking measurements for
different eye gaze features for 63 participants. These participants belong to
six expertise categories, namely: medical students, nurses, technicians,
residents, fellows and finally consultants. Each one of these participants
contributed to the data collection by interpreting ten different
electrocardiograms. The eye tracking data includes the eye fixations count and
duration, the eye gaze duration, and finally the fixations revisitations. It
was collected at 60 frames per second using a Tobii Pro X2-60. Each
participant was allowed a timeframe of 30 seconds to interpret each one of the
ten ECGs.  The collected data was processed taking into consideration two
defined area of interest distributions. This enabled the extraction of metrics
specifically tailored for the 12-lead electrocardiogram.
DOI: 10.5281/zenodo.6363333
title: Genomic insights into metabolic flux in ruby-throated hummingbirds

description: <strong>Hummingbirds employ hovering flight, displaying the highest wingbeat frequencies of any bird and sustaining the highest metabolic rates among all vertebrates. Their tissues are very well adapted to sustain efficient and rapid metabolic shifts. Hummingbirds oxidize ingested nectar sugars directly to fuel when foraging but have to switch to oxidizing stored lipids derived from ingested sugars during the night or long-distance migratory flights. The liver plays a vital role in moderating energy homeostasis and the rapid flux from glycolytic to lipogenic metabolism, demonstrated by a remarkable ability to sustain high rates of metabolism using endogenous lipids. The flight muscle must maintain rates as much as 55× greater than the maximum rates observed in any non-flying mammals for transport, uptake and oxidation of circulating sugars. Yet, understanding how this organism moderates energy turnover is hampered by a lack of information regarding how relevant enzymes differ in sequence, expression, and regulation. We generated a chromosome level de novo genome assembly of the ruby-throated hummingbird and used hybrid long and short-read sequencing methodologies for a comprehensive transcriptome assembly and annotation. </strong>
DOI: 10.5281/zenodo.6363332
title: Genomic insights into metabolic flux in ruby-throated hummingbirds

description: <strong>Hummingbirds employ hovering flight, displaying the highest wingbeat frequencies of any bird and sustaining the highest metabolic rates among all vertebrates. Their tissues are very well adapted to sustain efficient and rapid metabolic shifts. Hummingbirds oxidize ingested nectar sugars directly to fuel when foraging but have to switch to oxidizing stored lipids derived from ingested sugars during the night or long-distance migratory flights. The liver plays a vital role in moderating energy homeostasis and the rapid flux from glycolytic to lipogenic metabolism, demonstrated by a remarkable ability to sustain high rates of metabolism using endogenous lipids. The flight muscle must maintain rates as much as 55× greater than the maximum rates observed in any non-flying mammals for transport, uptake and oxidation of circulating sugars. Yet, understanding how this organism moderates energy turnover is hampered by a lack of information regarding how relevant enzymes differ in sequence, expression, and regulation. We generated a chromosome level de novo genome assembly of the ruby-throated hummingbird and used hybrid long and short-read sequencing methodologies for a comprehensive transcriptome assembly and annotation. </strong>
DOI: 10.34740/kaggle/dsv/3310186
title: BrCAD-5
DOI: 10.5281/zenodo.6362338
title: Variation in DNA methylation and response to short-term herbivory in Thlaspi arvense

description: Plant metabolic pathways and gene networks involved in the response to herbivory are well-established, but the impact of epigenetic factors as modulators of those responses is less understood. Here, we studied the role of DNA cytosine methylation on phenotypic responses after short-term herbivory in <em>Thlaspi arvense</em> plants with two contrasting flowering phenotypes. We investigated the effect of experimental demethylation and herbivory treatments following a 2x3 factorial design. First, half the seeds were submerged in a water solution of the demethylating agent 5-azacytidine and the other half only in water, as controls. Then, we assigned control and demethylated plants to three herbivory categories (i) insect herbivory, (ii) artificial herbivory, and (iii) undamaged plants. The effects of the demethylation and herbivory treatments were assessed by quantifying genome-wide global DNA cytosine methylation, concentration of leaf glucosinolates, final stem biomass, fruit and seed production, and seed size. For most of the plant traits analysed, individuals from the two plant-types responded differently. In late-flowering plants, global DNA methylation did not differ between control and demethylated plants but it was significantly reduced by herbivory. Conversely, in early-flowering plants, demethylation at seed stage was still evident in leaf genomes of reproductive individuals whereas herbivory did not affect their global DNA methylation. In late-flowering plants, artificial herbivory imposed a stronger reduction than insect herbivory in global DNA methylation and final stem biomass, and induced higher concentration of aliphatic glucosinolates. In early-flowering plants, the effects of herbivory were non-significant for the same traits. Finally, the effect of herbivory on reproductive parameters varied with the level of demethylation and the plant flowering-type. The complexity of our results suggests that the genetic background of experimental plants can affect the responses to treatments and it points towards multifaceted genetic-epigenetic interactions in determining herbivory-induced phenotypic plasticity.
DOI: 10.25582/data.2023-04.2782379/2334609
title: Data for EMSL Project 51287 from April 2023
DOI: 10.25582/data.2023-04.2782375/2334610
title: Data for EMSL Project 51287 from April 2023
DOI: 10.25582/data.2023-04.2782197/2334611
title: Data for EMSL Project 51287 from April 2023
DOI: 10.25582/data.2023-04.2781322/2334612
title: Data for EMSL Project 51287 from April 2023
DOI: 10.15468/dl.g7fcpt
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thrixspermum elongatum Ames"
 ]
}

 The dataset includes 115 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0125102-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-04.2782640/2334613
title: Data for EMSL Project 51287 from April 2023
DOI: 10.25582/data.2023-04.2781153/2334614
title: Data for EMSL Project 51287 from April 2023
DOI: 10.25582/data.2023-04.2782297/2334615
title: Data for EMSL Project 51287 from April 2023
DOI: 10.25582/data.2023-04.2782394/2334616
title: Data for EMSL Project 51287 from April 2023
DOI: 10.25582/data.2023-04.2781243/2334617
title: Data for EMSL Project 51287 from April 2023
DOI: 10.15468/dl.vjavfd
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taraxacum userinum R.Doll"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0125103-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-04.2781578/2334618
title: Data for EMSL Project 51287 from April 2023
DOI: 10.25582/data.2023-04.2782227/2334619
title: Data for EMSL Project 51287 from April 2023
DOI: 10.25582/data.2023-04.2781040/2334620
title: Data for EMSL Project 51287 from April 2023
DOI: 10.25582/data.2023-04.2781509/2334621
title: Data for EMSL Project 51287 from April 2023
DOI: 10.25582/data.2023-04.2782493/2334622
title: Data for EMSL Project 51287 from April 2023
DOI: 10.15468/dl.t5rt4w
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taraxacum heikkinenii Saarsoo"
 ]
}

 The dataset includes 121 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0125104-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-04.2782124/2334623
title: Data for EMSL Project 51287 from April 2023
DOI: 10.15468/dl.q5vmhx
title: Occurrence Download

description: A dataset containing 361 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thalictrum maritimum Dufour"
 ]
}

 The dataset includes 361 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0125106-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.