cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16994119.v1
title: Data associated with the paper: 'Testing the efficacy of ‘Curiosity’ feral cat baiting in woodland on Kangaroo Island, South Australia'.

description: The attached data is used in the paper entitled 'Testing the efficacy of ‘Curiosity’ feral cat baiting in woodland on Kangaroo Island, South Australia', submitted to Wildlife Research. The data set includes sex and age of all GPS collared cats (Sheet name: All_cats_sex_age), and the raw GPS waypoints of all collared cats between the 8<sup>th</sup> and the 30<sup>th</sup> of June one week prior to and one week after baiting (Sheet: Waypoints_all_9_30<sup>th</sup>_June). <br>The data associated with calculating the density of cats at the treatment and control sites before and after baiting area also attached. There is data on the cat detections at the treatment site one month before baiting (Sheet: Treatment_prebait_detections), and the location of cameras (Sheet: Treatment_prebait_detectors). Likewise at the treatment site after baiting data on cat detections and the location of cameras is included (Sheets: Treatment _postbait_detectors and Treatment_postbait_detections). The same data sets of cat detections and detectors (camera locations) pre and post baiting are also included for the control site (Sheets: Control _prebait_detectors and Control_prebait_detections, Control _postbait_detectors and Control_postbait_detections). <br>Finally data is attached on changes at the treatment site in the average proportion of trapnights with feral cat detections (per camera) on roads, animal trackways and woodland areas, is also included (Sheet: Average_cat_detections_habitat).
DOI: 10.6084/m9.figshare.16995052
title: Supplementary Material for: Innate Immune Training with Bacterial Extracts Enhances Lung Macrophage Recruitment to Protect from Betacoronavirus Infection

description: Training of the innate immune system with orally ingested bacterial extracts was demonstrated to have beneficial effects on infection clearance and disease outcome. The aim of our study was to identify cellular and molecular processes responsible for these immunological benefits. We used a murine coronavirus (MCoV) A59 mouse model treated with the immune activating bacterial extract Broncho-Vaxom (BV) OM-85. Tissue samples were analysed with qPCR, RNA sequencing, histology, and flow cytometry. After BV OM-85 treatment, interstitial macrophages accumulated in lung tissue leading to a faster response of type I interferon (IFN) signalling after MCoV infection resulting in overall lung tissue protection. Moreover, RNA sequencing showed that lung tissue from mice receiving BV OM-85 resembled an intermediate stage between healthy and viral infected lung tissue at day 4, indicating a faster return to normal tissue homoeostasis. The pharmacologic effect was mimicked by adoptively transferring naive lung macrophages into lungs from recipient mice before virus infection. The beneficial effect of BV OM-85 was abolished when inhibiting initial type I IFN signalling. Overall, our data suggest that BV OM-85 enhances lung macrophages allowing for a faster IFN response towards a viral challenge as part of the oral-induced innate immune system training.
DOI: 10.5517/ccdc.csd.cc27rnym
title: CCDC 2078331: Experimental Crystal Structure Determination

description: Related Article: Zhi-Hao Shang, Xiang-Jin Zhang, Yi-Ming Li, Rui-Xue Wu, Hui-Ru Zhang, Lu-Ying Qin, Xue Ni, Yu Yan, An-Xin Wu, Yan-Ping Zhu|2021|J.Org.Chem.|86|15733|doi:10.1021/acs.joc.1c01682
DOI: 10.6084/m9.figshare.16550910
title: UHPLC and LC-MS(ESI-MS)Test For Ethanolic Extract of White Oyster Mushroom.docx

description: The data is original source from the my exsperimental
DOI: 10.6084/m9.figshare.16550910.v3
title: UHPLC and LC-MS(ESI-MS)Test For Ethanolic Extract of White Oyster Mushroom.docx

description: The data is original source from the my exsperimental
DOI: 10.6084/m9.figshare.16961179
title: Supplementary Material for: Study of Baicalin toward COVID-19 Treatment: In silico Target Analysis and in vitro Inhibitory Effects on SARS-CoV-2 Proteases

description: Negative impacts of COVID-19 on human health and economic and social activities urge scientists to develop effective treatments. Baicalin is a natural flavonoid, extracted from a traditional medicinal plant, previously reported with anti-inflammatory activity. In this study, we used pharmacophore fitting and molecular docking to screen and determine docking patterns and the binding affinity of baicalin on 3 major targets of SARS-CoV-2 (3-chymotrypsin-like cysteine protease [3CLpro], papain-like protease [PLpro], and RNA-dependent RNA polymerase). The obtained data revealed that baicalin has high pharmacophore fitting on 3CLpro and predicted good binding affinity on PLpro. Moreover, using the enzymatic assay, we examined the inhibitory effect of baicalin in vitro on the screened enzymes. Baicalin also exhibits inhibitory effect on these proteases in vitro. Additionally, we performed pharmacophore-based screening of baicalin on human targets and conducted pathway analysis to explore the potential cytoprotective effects of baicalin in the host cell that may be beneficial for COVID-19 treatment. The result suggested that baicalin has multiple targets in human cell that may induce multiple pharmacological effects. The result of pathway analysis implied that these targets may be associated with baicalin-induced bioactivities that are involved with signals of pro-inflammation factors, such as cytokine and chemokine. Taken together with supportive data from the literature, the bioactivities of bailalin may be beneficial for COVID-19 treatment by reducing cytokine-induced acute inflammation. In conclusion, baicalin is potentially a good candidate for developing new therapeutic to treat COVID-19.
DOI: 10.25345/c5pk3q
title: MassIVE MSV000088364 - MS/MS spectra of Trypsin-digested mPruA-3 repeats containing three methyl groups
title: MALDI-TOF/TOF-MS spectra (LIFT) and LC-MS/MS spectra (CID and ETD) of Trypsin-digested mPruA-3 repeats containing three methyl groups Paper title: xxx (Figure S12D)
DOI: 10.25345/c5jw1t
title: MassIVE MSV000088365 - MS/MS spectrum of Trypsin-digested mPruA-9 repeats containing five methyl groups
title: MALDI-TOF/TOF-MS spectrum (LIFT) of Trypsin-digested mPruA-9 repeats containing five methyl groups Paper title: xxx (Figure S12E)
DOI: 10.15151/esrf-es-536306364
title: Structural Biology at EMBL Grenoble, IBS-CIBB and IAB

description: The proposals covers a broad range of structural biology projects related to pathogen biology, host-pathogen interactions, RNA biology and structure-based drug development that are carried out by PIs at EMBL Grenoble, IBS-CIBB and IAB. The proposers have long-standing experience in the use, as well as the development of beam lines for macromolecular crystallography and have participated in successive BAG applications over the years, mostly at the ESRF but also at other synchrotrons (e.g. Soleil, Petra III, Diamond, SLS).
DOI: 10.15151/esrf-es-541045440
title: Proteins and protein/DNA/RNA complexes involved in biosynthesis, protein folding and degradation, splicing, cancer, host pathogen interacti
DOI: 10.15151/esrf-es-541419709
title: FInnish National Protein Crystallography Consortium

description: The Finnish BAG encompasses 25 groups active in crystallography in Finland. The projects vary widely and include membrane proteins such as membrane pyrophosphatases, and various protein complexes and receptors (growth factor receptors, integrins), signaling proteins such as kinases, other proteins involved in disease and antibiotics development (neuronal adhesion and myelin proteins, PP2A, ADP-ribosylation and biocatalytic enzymes) and several pathogen proteins (e.g. viral proteins) and various enzyme targets and e.g. studies on phytochrome photoreceptors and complexes involved in actin and cytoskeleton dynamics and regulation. Overall the BAG serves the national needs for highly variable projects, with different biological and biotechnological applications. Several project will benefit from microfocus beam lines and tunable wavelength options for phasing, others benefit from quick robust screening by MASSIF. Biology lab is needed for SAXS experiments.
DOI: 10.15151/esrf-es-561456546
title: Control of Contraction in Skeletal Muscle by Thick Filament Mechano-sensing

description: Development of novel therapies to combat muscle weakness in disease and in the elderly has been limited by poor understanding of the normal mechanisms of regulation of muscle contraction. Synchrotron-based small angle X-ray scattering provides a uniquely powerful approach to investigate these mechanisms at the molecular level in intact muscles on the physiological timescale. The upgraded ID02 with the Eiger 2-4M detector currently offers the best facility worldwide to determine the regulatory structural changes in the myosin-containing thick filaments following single action potential stimulation of isolated mammalian muscles in physiological conditions, and their dependence on muscle load. No previous study has looked at thick filament mechano-sensing in mammalian muscle during physiological activation by a single action potential. The results will establish a structural and functional framework for testing small molecules as potential therapeutics for muscle weakness in man.
DOI: 10.15151/esrf-es-561458077
title: In-situ compression of Mg-based AM scaffolds for biomedical applications

description: Laser Additive Manufacturing (AM) of magnesium is extremely challenging, and only recently, it became possible to 3D print scaffolds of Mg-alloys. Mg-alloys are attractive for orthopedic application due to their biocompatibility and mechanical properties. However Mg-alloys suffer rapid biodegradation. The mechanical and biodegradation properties of these biomaterials are extremely important for their proper functioning, because the human body behaves as a corrosive environment with complex cyclic loading, which can cause mechanical failure of implants. In this context, AM biomaterials can be designed to adjust their properties. We aim at carrying out in-situ compression tests during tomography of AM scaffolds (before and after controlled degradation) to assess crack initiation and propagation mechanisms and their interrelation with the degradation behavior. The tomographic information will be used to feed numerical models of mechanical response and the degradation behavior combined.
DOI: 10.15151/esrf-es-532207513
title: Next-generation DFXM
DOI: 10.25345/c5f29n
title: MassIVE MSV000088366 - MS/MS spectra of GluC-digested mSanA substituted to alanine
title: MALDI-TOF/TOF-MS spectra (LIFT) of GluC-digested mSanA substituted to alanine Paper title: xxx (Figure S18ABC)
DOI: 10.21227/vef7-3h24
title: 20-19 electricity-Transportation Nexus dynamci test case

description: The data are mainly electricity part data for the paperAn Efficient LP-based Approach fo Spatial-Temporal Coordination of Electric VehicleFlows in Electricity-Transportation Nexus
DOI: 10.25345/c5986b
title: MassIVE MSV000088368 - MS/MS spectrum of mRceA-1 repeat substituted to alanine
title: MALDI-TOF/TOF-MS spectrum (LIFT) of mRceA-1 repeat substituted to alanine Paper title: xxx (Figure S18L)
DOI: 10.25345/c55k32
title: MassIVE MSV000088367 - MS/MS spectra of GluC-digested mSahA substituted to alanine
title: MALDI-TOF/TOF-MS spectra (LIFT) of GluC-digested mSahA substituted to alanine Paper title: xxx (Figure S18DEFGHIJK)
DOI: 10.5281/zenodo.5678590
title: msd-errors - Data for diffusion coefficient and offset figures

description: Data for a figure that shows the distributions of the mean and varance of the diffusion coefficient and offset that are found from the analysis of 1024 unique random walks using kinisi. This is performed for both a truely random walk and a temporally anti-correlated random walk.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5281/zenodo.5676214
title: msd-errors - Data for variance and covariance figure

description: Data for a figure that presents the variance and covariance for a true random walk. There is a comparison shown between the numerical result from 1024 unique random walks and the analysis, by kinisi, of the same 1024 random walks.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.25345/c51w0s
title: MassIVE MSV000088369 - MS/MS spectra of Trypsin-digested m(SahA-OphA) containing one-three methyl groups
title: LC-MS/MS spectra (HCD) of Trypsin-digested m(SahA-OphA) containing one-three methyl groups Paper title: xxx (Figure S20ABC)
DOI: 10.25345/c5x578
title: MassIVE MSV000088370 - MS/MS spectra of Trypsin-digested m(SahA-CsA) containing one-three methyl groups
title: LC-MS/MS spectra (HCD) of Trypsin-digested m(SahA-CsA) containing one-three methyl groups Paper title: xxx (Figure S20DEF)
DOI: 10.5281/zenodo.5678655
title: msd-errors - Data for diffusion coefficient and offset figures

description: Data for a figure that shows the distributions of the mean and varance of the diffusion coefficient and offset that are found from the analysis of 1024 unique random walks using kinisi. This is performed for both a truely random walk and a temporally anti-correlated random walk.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5281/zenodo.5101420
title: Machine learning models, and training, validation and test datasets for: "Sequence determinants of human gene regulatory elements"

description: This record contains the training, test and validation datasets used to train and evaluate the machine learning models in manuscript: <strong>Sahu, Biswajyoti, et al. "Sequence determinants of human gene regulatory elements." (2021).</strong> <br> This record contains also the final hyperparameter-optimized models for each training dataset/task combination described in the manuscript. The README-files provided with the record describe the datasets and models in more detail. The datasets deposited here are derived from the original raw data (GEO accession: GSE180158) as described in the Methods of the manuscript.
DOI: 10.5281/zenodo.5101419
title: Machine learning models, and training, validation and test datasets for: "Sequence determinants of human gene regulatory elements"

description: This record contains the training, test and validation datasets used to train and evaluate the machine learning models in manuscript: <strong>Sahu, Biswajyoti, et al. "Sequence determinants of human gene regulatory elements." (2021).</strong> <br> This record contains also the final hyperparameter-optimized models for each training dataset/task combination described in the manuscript. The README-files provided with the record describe the datasets and models in more detail. The datasets deposited here are derived from the original raw data (GEO accession: GSE180158) as described in the Methods of the manuscript.
DOI: 10.5281/zenodo.5678658
title: msd-errors - Data for variance and covariance figure

description: Data for a figure that presents the variance and covariance for a true random walk. There is a comparison shown between the numerical result from 1024 unique random walks and the analysis, by kinisi, of the same 1024 random walks.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.18112/openneuro.ds003885.v1.0.3
title: Capacity for movement is a major organisational principle in object representations: EEG data from Experiment 2
DOI: 10.15468/au7vaq
title: Rhabdochona fuscovaria sp. n. (Nematoda: Rhabdochonidae) from the stomach of frog Scinax fuscovarius (Anura: Hylidae) in Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Alcantara, Edna Paulino De, Úngari, Leticia Pereira, Ferreira-Silva, Cristiana, Emmerich, Enzo, Pinheiro, Raul Henrique Da Silva, O´Dwyer, Lucia Helena, Silva, Rein- Aldo José Da (2021): Rhabdochona fuscovaria sp. n. (Nematoda: Rhabdochonidae) from the stomach of frog Scinax fuscovarius (Anura: Hylidae) in Brazil. Zootaxa 5067 (4): 569-584, DOI: https://doi.org/10.11646/zootaxa.5067.4.5
DOI: 10.5517/ccdc.csd.cc27w9dv
title: CCDC 2081817: Experimental Crystal Structure Determination

description: Related Article: Bence Varga, Péter Szemesi, Petra Nagy, Réka Herbay, Tamás Holczbauer, Elemér Fogassy, György Keglevich, Péter Bagi|2021|J.Org.Chem.|86|14493|doi:10.1021/acs.joc.1c01364
DOI: 10.5517/ccdc.csd.cc27wxy0
title: CCDC 2082423: Experimental Crystal Structure Determination

description: Related Article: Abhishek Kundu, Dhananjay Dey, Subhankar Pal, Debashis Adhikari|2021|J.Org.Chem.|86|15665|doi:10.1021/acs.joc.1c02234
DOI: 10.3886/e153101
title: Replication Data for: "Patience, Risk-Taking, and Human Capital Investment across Countries" by Hanushek, Kinne, Lergetporer, and Woessmann, published in the Economic Journal

description: Patience and risk-taking – two preference components that steer intertemporal decision-making – are fundamental to human capital investment decisions. To understand how they contribute to international skill differences, we combine PISA tests with the Global Preference Survey. We find that opposing effects of patience (positive) and risk-taking (negative) together account for two thirds of the cross-country variation in student skills. In an identification strategy addressing unobserved residence-country features, we find similar results when assigning migrant students their country-of-origin preferences in models with residence-country fixed effects. Associations of national preferences with family and school inputs suggest that both may act as channels. <br><br>
DOI: 10.3886/e153101v2
title: Replication Data for: "Patience, Risk-Taking, and Human Capital Investment across Countries" by Hanushek, Kinne, Lergetporer, and Woessmann, published in the Economic Journal

description: Patience and risk-taking – two preference components that steer intertemporal decision-making – are fundamental to human capital investment decisions. To understand how they contribute to international skill differences, we combine PISA tests with the Global Preference Survey. We find that opposing effects of patience (positive) and risk-taking (negative) together account for two thirds of the cross-country variation in student skills. In an identification strategy addressing unobserved residence-country features, we find similar results when assigning migrant students their country-of-origin preferences in models with residence-country fixed effects. Associations of national preferences with family and school inputs suggest that both may act as channels. <br><br>
DOI: 10.25721/w0yn-dg98
title: Défilé (arrivée des danseurs en cortège) et danse des arceaux fleuris
DOI: 10.25721/ts2p-1h81
title: Ingurutxo de Luzia enchaîné à danse des mouchoirs
DOI: 10.34740/kaggle/dsv/2802313
title: AutoXGB
DOI: 10.25721/dt81-4661
title: Suite de danses
DOI: 10.25721/jvnk-xk76
title: Jota
DOI: 10.5281/zenodo.5676184
title: Datasets for publication: 'Measuring the excellence contribution at the journal level: An alternative to Garfield's Impact Factor'

description: Datasets for publication: 'Measuring the excellence contribution at the journal level: An alternative to Garfield's Impact Factor'. <strong>Overview.</strong> Overview of the number of journals, publications, excellent publications and multidisciplinarity for each category considered. <strong>ALL.</strong> Journal indicators for all the document types by JCR category. <strong>ALL_JCR.</strong> Journal indicators for all the document types by JCR category (only journals indexed in the JCR category are taken into account). <strong>AR.</strong> Journal indicators for only articles and reviews by JCR category. <strong>AR_JCR. </strong> Journal indicators for only articles and reviews by JCR category (only journals indexed in the JCR category are taken into account).
DOI: 10.5281/zenodo.5676183
title: Datasets for publication: 'Measuring the excellence contribution at the journal level: An alternative to Garfield's Impact Factor'

description: Datasets for publication: 'Measuring the excellence contribution at the journal level: An alternative to Garfield's Impact Factor'. <strong>Overview.</strong> Overview of the number of journals, publications, excellent publications and multidisciplinarity for each category considered. <strong>ALL.</strong> Journal indicators for all the document types by JCR category. <strong>ALL_JCR.</strong> Journal indicators for all the document types by JCR category (only journals indexed in the JCR category are taken into account). <strong>AR.</strong> Journal indicators for only articles and reviews by JCR category. <strong>AR_JCR. </strong> Journal indicators for only articles and reviews by JCR category (only journals indexed in the JCR category are taken into account).
DOI: 10.25721/wpef-0427
title: Danse
DOI: 10.6084/m9.figshare.16995349
title: Supplementary Material for: Insight into the Attitudes and Experiences of Adults with Non-Communicable Diseases a Year into the COVID-19 Pandemic: The Malta Experience

description: <b><i>Introduction:</i></b> Non-communicable diseases (NCDs) have been a global epidemic long before the advent of COVID-19. Understandably, with the onset of COVID-19, health priorities shifted. The aim of this study was to explore the impact of COVID-19 through attitudes and experiences on the health and well-being of the Malta adult population suffering from NCDs, a year into COVID-19. <b><i>Methods:</i></b> An anonymous survey was distributed online between February 1 and 26, 2021 using Google Forms<sup>®</sup>. This assessed the impact of COVID-19 on medical care, intention to take a COVID-19 vaccine, and whether COVID-19 was acquired. Quantitative and qualitative analyses were performed. <b><i>Results:</i></b> Out of the 1,034 participants, 34.82% (95% CI, 31.97–37.77; <i>n</i> = 360) reported to suffer from NCDs (single NCD, <i>n</i> = 276; 2 NCDs, <i>n</i> = 56; 3 NCDs, <i>n</i> = 28) with 6.94% (95% CI, 4.71–10.09) of these reported acquiring COVID-19. Since COVID-19, the NCD population visited the general practitioners less (47%) than those without NCDs (32%) (<i>p</i> ≤ 0.001). With a consensus of concern and fear, “I rather skip check-ups than risk getting COVID-19 in waiting room or clinic.” Postponement and cancellations of medical appointments were reported: “had to do blood tests privately as health centre was not doing them” and “delayed treatment and still awaiting further appointments that were postponed more than once.” The majority intended to take COVID-19 vaccine. <b><i>Conclusions:</i></b> It is clear that individuals with NCDs have experienced a general negative effect on their medical care. It’s recommended that a dual action strategy is embraced to ensure that both NCDs and COVID-19 are treated simultaneously, leaving no one behind.