cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6372830.v1
title: A simple biogenic route to rapid synthesis of Au@TiO2 nanocomposites by electrochemically active biofilms

description: Deposition of gold on titanium dioxide (TiO2) nanoparticles is highly beneficial for maximizing the efficiency of many photocatalytic reactions. In this study, we have reported for the first time the use of an electrochemically active biofilm (EAB) for the synthesis of Au@TiO2 nanocomposite with sodium acetate as the electron donor. The EAB acts as anelectron generator for the reduction of gold ions on thesurface of TiO2 nanoparticles. It was observed that theTiO2 plays not only as a support for the goldnanoparticles but also as a storage of electronsproduced by the EAB within the particles. Thesestored electrons dramatically increase the reduction ofgold ions and hence we have observed the formationof the Au@TiO2 nanocomposites within 90 min. A mechanism of the nanocomposite formation is alsoproposed. The as-synthesized nanocomposites werecharacterized by UV–Vis absorption spectroscopy tomonitor the proper formation of the nanocomposites.X-ray diffraction and transmission electron microscopicanalyses were performed to determine the structural and microstructural properties of the nanocomposites.High-resolution transmission electron micrographs depict the proper formation of the Au@TiO2 nanocomposites with gold nanoparticle size varying from 5 to 10 nm with an increase in the gold precursor concentration. Zeta potential measurements were used to investigate surface charges of the as-synthesized nanocomposites. This novel biogenicroute represents a unique pathway for the low cost,eco-friendly, rapid, and controlled synthesis of nanostructured Au@TiO2 hybrid systems which will trulyrevolutionize the synthetic fields of nanocomposites.
DOI: 10.6084/m9.figshare.6372698
title: A remarkable case of basis set dependence: the false convergence patterns of the methyl anion<sup>*</sup>

description: The gas phase methyl anion, CH3−, has been difficult to study experimentally, and the extreme basis set dependence of its molecular properties has presented a comparable challenge to theoreticians. Reliable predictions for the electronic structure of CH3− require the use of basis sets capable of describing both the diffuse and valence characteristics of the system. The present study examines the basis set dependence of the equilibrium geometry and harmonic vibrational frequencies of CH3−. Both Hartree–Fock and CCSD(T) levels of theories are used with cc-pV<i>X</i>Z (X=D, T, Q, 5, 6) basis sets with up to triple augmentation to describe the diffuse nature of the electron distribution. We find that non-augmented basis sets systematically yield vibrational frequencies that are too high for the umbrella mode and too low for the C–H symmetric and antisymmetric stretch even when extrapolated to the complete basis set limit, displaying false convergence patterns. The inclusion of one set of augmented functions significantly improves the convergence of these properties, but again yields false convergence patterns. Only with the doubly augmented basis set do we approach the basis set limit for the CH3− vibrational frequencies.
DOI: 10.6084/m9.figshare.6372698.v1
title: A remarkable case of basis set dependence: the false convergence patterns of the methyl anion<sup>*</sup>

description: The gas phase methyl anion, CH3−, has been difficult to study experimentally, and the extreme basis set dependence of its molecular properties has presented a comparable challenge to theoreticians. Reliable predictions for the electronic structure of CH3− require the use of basis sets capable of describing both the diffuse and valence characteristics of the system. The present study examines the basis set dependence of the equilibrium geometry and harmonic vibrational frequencies of CH3−. Both Hartree–Fock and CCSD(T) levels of theories are used with cc-pV<i>X</i>Z (X=D, T, Q, 5, 6) basis sets with up to triple augmentation to describe the diffuse nature of the electron distribution. We find that non-augmented basis sets systematically yield vibrational frequencies that are too high for the umbrella mode and too low for the C–H symmetric and antisymmetric stretch even when extrapolated to the complete basis set limit, displaying false convergence patterns. The inclusion of one set of augmented functions significantly improves the convergence of these properties, but again yields false convergence patterns. Only with the doubly augmented basis set do we approach the basis set limit for the CH3− vibrational frequencies.
DOI: 10.6084/m9.figshare.6371843.v1
title: Estado del Arte del Modelo de Aula Invertida en el Ecuador.

description: Con este trabajo se dio a conocer la situación actual existente en el Ecuador sobre el uso del Modelo de Aula Invertida (MAI) como nueva estrategia educativa basada en la utilización de las TIC. Ante esto, se muestran datos importantes sobre dicho modelo, aportando datos significativos sobre los alcances encontrados en el Ecuador. Se presenta una revisión documental sobre la teoría y práctica del Modelo de Aula Invertida (MAI) basada en las experiencias publicadas sobre el modelo en cuestión. Se culmina con un análisis de las categorías encontradas. Las conclusiones revelan una nutrida experiencia de este modelo, internacionalmente como en Ecuador.
DOI: 10.6084/m9.figshare.6370121
title: Jhang et al. (2018)

description: Representative video files. Related to findings of Jhang et al. (2018).<br>Other data are available from corresponding authors upon reasonable requests.
DOI: 10.6084/m9.figshare.6370121.v3
title: Jhang et al. (2018)

description: Representative video files. Related to findings of Jhang et al. (2018).<br>Other data are available from corresponding authors upon reasonable requests.
DOI: 10.6084/m9.figshare.6369134
title: Efficient Lock-Free Removing and Compaction for the Cache-Trie Data Structure

description: This artifact contains the source code required to run and reproduce the results from the corresponding paper on Cache-trie compaction and remove operations: "Efficient Lock-Free Removing and Compaction for the Cache-Trie Data Structure".<br>Cache-tries improve the running time of conventional lock-free hash tries through the addition of a cache. The addition of this cache has been shown to improve the run time of lookup and insert operations from <i>O</i>(log <i>n</i>) to <i>O</i>(1) time.<br>Here, as described in the accompanying paper, a lock-free remove operation for cache-tries is implemented, both with and without compaction. In addition, a further optimization to the remove operation is presented, along with a performance evaluation comparing the novel implementations against three similar data structures.<br>The implementations presented here are written in Scala using the concurrent reactive programming framework Reactors.IO. Full details on installation as well as running the presented benchmarks are provided in the file <b>artifact-doc.pdf</b>, located at the root level of the artifact.<br>This artifact is provided as a tarball that can be decompressed using standard utilities.
DOI: 10.6084/m9.figshare.6368960
title: Individual files - cave locations Costa Rica

description: This is a file set providing locations of 44 caves separated in individual files. The caves are located in the Puntarenas province of Costa Rica. The files are part of the manuscript 297066 for the Diversity journal, named "Diversity and conservation of cave-dwelling bats in the Brunca region of Costa Rica".
DOI: 10.6084/m9.figshare.6368960.v1
title: Individual files - cave locations Costa Rica

description: This is a file set providing locations of 44 caves separated in individual files. The caves are located in the Puntarenas province of Costa Rica. The files are part of the manuscript 297066 for the Diversity journal, named "Diversity and conservation of cave-dwelling bats in the Brunca region of Costa Rica".
DOI: 10.6084/m9.figshare.6368936
title: Presentation at BioSB PhD retreat Flash Talk on DSMN

description: Presentation and abstract for the BioSB PhD retreat 2018 on the shortest path analysis for two data sets on metabolites from the Metabolights repository, using Cytoscape and Neo4j.<br>
DOI: 10.6084/m9.figshare.6368936.v1
title: Presentation at BioSB PhD retreat Flash Talk on DSMN

description: Presentation and abstract for the BioSB PhD retreat 2018 on the shortest path analysis for two data sets on metabolites from the Metabolights repository, using Cytoscape and Neo4j.<br>
DOI: 10.6084/m9.figshare.6368762
title: Cave Locations Costa Rica

description: This is a dataset providing locations of 44 caves in the Puntarenas province of Costa Rica. The dataset is part of the manuscript 297066 for the Diversity journal, named "Diversity and conservation of cave-dwelling bats in the Brunca region of Costa Rica".
DOI: 10.6084/m9.figshare.6368762.v1
title: Cave Locations Costa Rica

description: This is a dataset providing locations of 44 caves in the Puntarenas province of Costa Rica. The dataset is part of the manuscript 297066 for the Diversity journal, named "Diversity and conservation of cave-dwelling bats in the Brunca region of Costa Rica".
DOI: 10.6084/m9.figshare.6368762.v3
title: Cave Locations Costa Rica

description: This is a dataset providing locations of 44 caves in the Puntarenas province of Costa Rica. The dataset is part of the manuscript 297066 for the Diversity journal, named "Diversity and conservation of cave-dwelling bats in the Brunca region of Costa Rica".
DOI: 10.6084/m9.figshare.6368762.v2
title: Cave Locations Costa Rica

description: This is a dataset providing locations of 44 caves in the Puntarenas province of Costa Rica. The dataset is part of the manuscript 297066 for the Diversity journal, named "Diversity and conservation of cave-dwelling bats in the Brunca region of Costa Rica".
DOI: 10.6084/m9.figshare.6368705
title: Supplemental material for Giri et al 2018 "The Neurospora crassa standard Oak Ridge background exhibits an atypically efficient meiotic silencing by unpaired DNA."

description: Table S1 presents genome sequence statistics of genomic DNA samples NC1 -NC8.Table S2 presents the fraction of round ascospores produced in crosses heterozygous or homozygous for the <i>::r1</i> transgene. Table S3 presents the fraction of round ascospores in lid harvests of crosses heterozygous or homozygous for the <i>::r3</i> transgene.Table S4 presents the fraction of round ascospores in lid harvests of crosses heterozygous or homozygous for the <i>::r1</i> transgene.<br>Figure S1 presents the crosses made to obtain the <i>Sad-2<sup>Nt </sup></i>strains.Figure S2 presents the OR-derived genome segments common to the six OR-type f1 progeny from the cross B/S1 x OR.The word file has the Legends to Figures S1 and S2.<br>
DOI: 10.6084/m9.figshare.6368705.v1
title: Supplemental material for Giri et al 2018 "The Neurospora crassa standard Oak Ridge background exhibits an atypically efficient meiotic silencing by unpaired DNA."

description: Table S1 presents genome sequence statistics of genomic DNA samples NC1 -NC8.Table S2 presents the fraction of round ascospores produced in crosses heterozygous or homozygous for the <i>::r1</i> transgene. Table S3 presents the fraction of round ascospores in lid harvests of crosses heterozygous or homozygous for the <i>::r3</i> transgene.Table S4 presents the fraction of round ascospores in lid harvests of crosses heterozygous or homozygous for the <i>::r1</i> transgene.<br>Figure S1 presents the crosses made to obtain the <i>Sad-2<sup>Nt </sup></i>strains.Figure S2 presents the OR-derived genome segments common to the six OR-type f1 progeny from the cross B/S1 x OR.The word file has the Legends to Figures S1 and S2.<br>
DOI: 10.6084/m9.figshare.6368702
title: location_caves.xlsx

description: This is a dataset, providing locations (canton, district and town) of 44 caves in the Puntarenas province of Costa Rica. The dataset is part of a manuscript 297066 for the Diversity journal, called "Diversity and conservation of cave-dwelling bats in the Brunca region of Costa Rica".
DOI: 10.6084/m9.figshare.6368702.v1
title: location_caves.xlsx

description: This is a dataset, providing locations (canton, district and town) of 44 caves in the Puntarenas province of Costa Rica. The dataset is part of a manuscript 297066 for the Diversity journal, called "Diversity and conservation of cave-dwelling bats in the Brunca region of Costa Rica".
DOI: 10.6084/m9.figshare.6368009
title: Rapid socio-economic changes, psychosocial factors and prevalence of hypertension among men and women aged 55 years at baseline in Estonia: a 13-year follow-up study

description: <b>Background:</b> Hypertension is an important public health problem which causes premature morbidity and mortality. Cardiovascular diseases are responsible for about 55% of deaths in Estonia. <b>The purpose of the study:</b> was to assess, through a follow-up period, the prevalence of hypertension and to observe which risk factors of cardiovascular disease impact the occurrence of the disease. The second aim of the study was to evaluate the role of psychosocial factors and personality traits among individuals with a diagnosis of hypertension. <b>Materials and methods:</b> The 330 subjects from Estonia, aged 55 years at baseline, from among whom 219 participated at follow-up. A cross-sectional study based on a self-reported questionnaire was conducted. <b>Results:</b> Over 13 years, the prevalence of hypertension increased from 4% to 53%. Obese (body mass index ≥30 kg/m<sup>2</sup>) individuals were four times more likely to belong to the hypertension group (<i>p</i> p p <b>Conclusions:</b> According to the 13-year follow-up study, rapid socio-economic changes in Estonia have affected psychosocial health factors among 55-year-old individuals with a diagnosis of hypertension. There is a significant relationship between obesity and the development of hypertension.
DOI: 10.6084/m9.figshare.6368009.v1
title: Rapid socio-economic changes, psychosocial factors and prevalence of hypertension among men and women aged 55 years at baseline in Estonia: a 13-year follow-up study

description: <b>Background:</b> Hypertension is an important public health problem which causes premature morbidity and mortality. Cardiovascular diseases are responsible for about 55% of deaths in Estonia. <b>The purpose of the study:</b> was to assess, through a follow-up period, the prevalence of hypertension and to observe which risk factors of cardiovascular disease impact the occurrence of the disease. The second aim of the study was to evaluate the role of psychosocial factors and personality traits among individuals with a diagnosis of hypertension. <b>Materials and methods:</b> The 330 subjects from Estonia, aged 55 years at baseline, from among whom 219 participated at follow-up. A cross-sectional study based on a self-reported questionnaire was conducted. <b>Results:</b> Over 13 years, the prevalence of hypertension increased from 4% to 53%. Obese (body mass index ≥30 kg/m<sup>2</sup>) individuals were four times more likely to belong to the hypertension group (<i>p</i> p p <b>Conclusions:</b> According to the 13-year follow-up study, rapid socio-economic changes in Estonia have affected psychosocial health factors among 55-year-old individuals with a diagnosis of hypertension. There is a significant relationship between obesity and the development of hypertension.
DOI: 10.6084/m9.figshare.6367925
title: The Long Walk to Knowledge: On the Determinants of Higher Education Mobility to Europe

description: This paper investigates the determinants of demand for higher education mobility from students in developing countries to Europe. Used together with various linguistic relations, we emphasise the relevance of informal and formal networks in explaining resistance to student migration. The former are made up of friends or previous students while the latter are formal partnerships that have been established among higher education institutions. Overall, our results show that, apart from the usual economic considerations, student mobility is strongly correlated with non-monetary factors specific to origin and destination, such as socio-demographic characteristics, individual beliefs, and institutional profiles.
DOI: 10.6084/m9.figshare.6367685
title: DNN Classifier of Wide-angle Retinal Images in Computer-Aided Screening for ROP

description: This repository contains the following files:<br>1. data set preview.png<br>A preview of the data set. This is a snapshot of the resized (80x60) version of the training & test data set.The original image data set are not provided, due to patient privacy protection and hospital IRB regulations.<br>2. Training Set Thumbnails.zip<br>The training dataset includes:Class I (with disease): 8089Class II (without disease): 9711<br><br>3. Test Set Thumbnails.zip<br>The test training dataset includes:Class I (with disease): 155Class II (without disease): 1587<br>4. DNNs.zip<br>This zip file contains 3 subfolders: AlexNet, GoogLeNet, VGG16.Each subfolder further includes: Model definition graphTwo trained models in the Caffe format. One is trained "from scratch" and the other "by transfer learning". P-R curveROC curveSoftmax output probabilities on the test data set<br><br>5. HumanExpertsPerformance.zip<br>The five pediatric ophthalmologists' diagnoses on the test data setDNN performance measures<br>DNN vs Human P-R curveDNN vs Human ROC curve<br><br>6. scripts.zip<br>Scripts used in this study for batch inference and data analysis. <br><br>
DOI: 10.6084/m9.figshare.6365450
title: Schemes and figures for the manuscript and supporting information (SI)

description: We provide original Scheme 1 (cdx and png formats) and all Figure 1 (cdx and pgn) to 8 (png) for the corresponding manuscript together with Figure S1-S6 (png) for SI.<br>
DOI: 10.6084/m9.figshare.6365450.v2
title: Schemes and figures for the manuscript and supporting information (SI)

description: We provide original Scheme 1 (cdx and png formats) and all Figure 1 (cdx and pgn) to 8 (png) for the corresponding manuscript together with Figure S1-S6 (png) for SI.<br>
DOI: 10.6084/m9.figshare.6365450.v4
title: Schemes and figures for the manuscript and supporting information (SI)

description: We provide original Scheme 1 (cdx and png formats) and all Figure 1 (cdx and pgn) to 8 (png) for the corresponding manuscript together with Figure S1-S6 (png) for SI.<br>
DOI: 10.6084/m9.figshare.6365450.v3
title: Schemes and figures for the manuscript and supporting information (SI)

description: We provide original Scheme 1 (cdx and png formats) and all Figure 1 (cdx and pgn) to 8 (png) for the corresponding manuscript together with Figure S1-S6 (png) for SI.<br>
DOI: 10.6084/m9.figshare.6365201
title: King and Van Doorslaer (2018)

description: Files associated with King and Van Doorslaer (2018). Building (viral) phylogenetic trees using a Maximum Likelihood approach. published in Current Protocols
DOI: 10.6084/m9.figshare.6365201.v1
title: FigShare.zip

description: Files associated with King and Van Doorslaer (2018). Building (viral) phylogenetic trees using a Maximum Likelihood approach. published in Current Protocols
DOI: 10.6084/m9.figshare.6365048
title: A lemon myrtle extract inhibits glucosyltransferases activity of <i>Streptococcus mutans</i>

description: <i>Streptococcus mutans</i> is a bacterium found in human oral biofilms (dental plaques) that is associated with the development of dental caries. Glucosyltransferases (GTFs) are key enzymes involved in dental plaque formation, and compounds that inhibit their activities may prevent dental caries. We developed a screening system for GTF-inhibitory activities, and used it to profile 44 types of herbal tea extracts. Lemon myrtle (<i>Backhousia citriodora</i>) extract exhibited the highest GTF-inhibitory activity, with an IC<sub>50</sub> for GTF in solution of 0.14 mg mL<sup>−1</sup>. Furthermore, lemon myrtle extracts had the third-highest polyphenol content of all tested extracts, and strongly inhibited <i>S. mutans</i> biofilm. Interestingly, lemon myrtle extracts did not inhibit cell growth. Glucosyltransferases-inhibitory activities of 44 types of herbal tea extracts.
DOI: 10.6084/m9.figshare.6365048.v1
title: A lemon myrtle extract inhibits glucosyltransferases activity of <i>Streptococcus mutans</i>

description: <i>Streptococcus mutans</i> is a bacterium found in human oral biofilms (dental plaques) that is associated with the development of dental caries. Glucosyltransferases (GTFs) are key enzymes involved in dental plaque formation, and compounds that inhibit their activities may prevent dental caries. We developed a screening system for GTF-inhibitory activities, and used it to profile 44 types of herbal tea extracts. Lemon myrtle (<i>Backhousia citriodora</i>) extract exhibited the highest GTF-inhibitory activity, with an IC<sub>50</sub> for GTF in solution of 0.14 mg mL<sup>−1</sup>. Furthermore, lemon myrtle extracts had the third-highest polyphenol content of all tested extracts, and strongly inhibited <i>S. mutans</i> biofilm. Interestingly, lemon myrtle extracts did not inhibit cell growth. Glucosyltransferases-inhibitory activities of 44 types of herbal tea extracts.
DOI: 10.6084/m9.figshare.6364955
title: Code to reproduce Dallas, Carlson, and Poisot 2018 "Leveraging pathogen community distributions to understand outbreak and emergence potential"

description: Code to reproduce the analyses contained within <br>&gt; Dallas, T, C Carlson, and T Poisot 2019. Testing predictability of disease outbreaks with a simple model of pathogen biogeography. http://dx.doi.org/10.1098/rsos.190883<br><br>
DOI: 10.6084/m9.figshare.6364955.v1
title: Code to reproduce Dallas, Carlson, and Poisot 2018 "Leveraging pathogen community distributions to understand outbreak and emergence potential"

description: Code to reproduce the analyses contained within <br>&gt; Dallas, T, C Carlson, and T Poisot 2018. Leveraging pathogen community distributions to understand outbreak and emergence potential.<br><br>
DOI: 10.6084/m9.figshare.6364955.v3
title: Code to reproduce Dallas, Carlson, and Poisot 2018 "Leveraging pathogen community distributions to understand outbreak and emergence potential"

description: Code to reproduce the analyses contained within <br>&gt; Dallas, T, C Carlson, and T Poisot 2019. Testing predictability of disease outbreaks with a simple model of pathogen biogeography. http://dx.doi.org/10.1098/rsos.190883<br><br>
DOI: 10.6084/m9.figshare.6364955.v2
title: Code to reproduce Dallas, Carlson, and Poisot 2018 "Leveraging pathogen community distributions to understand outbreak and emergence potential"

description: Code to reproduce the analyses contained within <br>&gt; Dallas, T, C Carlson, and T Poisot 2019. Leveraging pathogen community distributions to understand outbreak and emergence potential. Royal Society Open Science. <br><br>
DOI: 10.6084/m9.figshare.6364679
title: Data for McCaffrey et al. HrQoL in patients with IMBO.xlsx

description: Original Data for Journal Article: "Health-related quality of life in patients with inoperable malignant bowel obstruction: results from a double-blind, placebo-controlled randomised trial of octreotide" by McCaffrey, N et al (yet to be published)
DOI: 10.6084/m9.figshare.6364679.v1
title: Data for McCaffrey et al. HrQoL in patients with IMBO.xlsx

description: Original Data for Journal Article: "Health-related quality of life in patients with inoperable malignant bowel obstruction: results from a double-blind, placebo-controlled randomised trial of octreotide" by McCaffrey, N et al (yet to be published)