cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21227/c7sa-wq24
title: GSM Radio Frequency Fingerprinting

description: This is a data set for Radio Frequency fingerprinting, which is a kind of identification of wireless devices based on their intrinsic physical features. The data set is composed by GSM bursts collected from 12 GSM mobile phones while transmitting.  The samples have been collected using a Software Defined Radio with a sample rate at 20 MS/s. The content information has been removed from the bursts to remove the risk of bias due to content. The data set is in MATLAB format.
DOI: 10.6084/m9.figshare.21806472
title: GDM Dataset.xlsx

description: Using CERNER records of pregnancies monitored at St. Mary's Hospital in London from April 2016 to November 2019, we carried out a retrospective observational research. 26063 patients were found in the initial search results, with the following factors: Postcode, height, weight, BMI at booking, ethnicity (self-reported), parity, offer of a glucose tolerance test, results of the test (0 minutes and 120 minutes after a 75g glucose load), mode of delivery, estimated total blood loss, gestational age, neonatal birthweight, admission to a SCBU, length of stay after delivery, foetal sex, and stillbirth are some of the other factors taken into account. Prior to analysis, patients having missing values for one or more of the important variables were deleted from the dataset. We did not make an effort to impute missing data. When reexamining the original patient data was not possible, significantly outlying results were adjusted, and datasets were then eliminated. Unit measurement inconsistencies were fixed.
DOI: 10.5281/zenodo.7501751
title: Dataset related to article "Surgical treatment for vestibular schwannoma in patients aged ≥65-years: A retrospective multi-centric study "

description: This record contains raw data related to article “Surgical treatment for vestibular schwannoma in patients aged ≥65-years: A retrospective multi-centric study" The worldwide older population is significantly increasing in recent decades, particularly in Western countries. However, there is a lack of data regarding risks and benefits in neurosurgical practice for this subgroup of patients, which often leads to challenging decision-making processes. Vestibular schwannomas (VS) are benign tumors, having a peak incidence in the 6th and 7th decades of life. VSs represent approximately 6 % of all intracranial and 80 % of cerebellopontine angle (CPA) tumors, and incidence rates are increasing over time, ranging from 0.2 to 1.7 per 100,000 population. Regarding the older population, the question of what should be the optimal treatment of VS is still a matter of debate. Indeed, life expectancy and physiological reserves for recovery are relatively lower in this subgroup of patients. Moreover, the presence of any underlying comorbidity could increase the risk of both intra and postoperative complications . In this context, most of the recent body of literature appears to favor conservative approaches (wait-and-see strategy) and other treatment options such as hypo-fractionated radiotherapy (RT) or stereotactic radiosurgery (SRS). Nevertheless, in selected cases, surgical treatment could represent the method of choice some recent reports suggest that surgery could be a safe and feasible approach in selected cases. For instance, factors such as the presence of a large lesion leading to hydrocephalus, progressive neurological deficits due to compression of the surrounding neurovascular structures, cerebellar and/or brainstem edema, and severe persistent vestibular dysfunction must be considered and represent major criteria for surgery. In the present study, we reported our experience with 31 patients aged ≥65-year-old who underwent surgical resection for VS.
DOI: 10.5281/zenodo.7501750
title: Dataset related to article "Surgical treatment for vestibular schwannoma in patients aged ≥65-years: A retrospective multi-centric study "

description: This record contains raw data related to article “Surgical treatment for vestibular schwannoma in patients aged ≥65-years: A retrospective multi-centric study" The worldwide older population is significantly increasing in recent decades, particularly in Western countries. However, there is a lack of data regarding risks and benefits in neurosurgical practice for this subgroup of patients, which often leads to challenging decision-making processes. Vestibular schwannomas (VS) are benign tumors, having a peak incidence in the 6th and 7th decades of life. VSs represent approximately 6 % of all intracranial and 80 % of cerebellopontine angle (CPA) tumors, and incidence rates are increasing over time, ranging from 0.2 to 1.7 per 100,000 population. Regarding the older population, the question of what should be the optimal treatment of VS is still a matter of debate. Indeed, life expectancy and physiological reserves for recovery are relatively lower in this subgroup of patients. Moreover, the presence of any underlying comorbidity could increase the risk of both intra and postoperative complications . In this context, most of the recent body of literature appears to favor conservative approaches (wait-and-see strategy) and other treatment options such as hypo-fractionated radiotherapy (RT) or stereotactic radiosurgery (SRS). Nevertheless, in selected cases, surgical treatment could represent the method of choice some recent reports suggest that surgery could be a safe and feasible approach in selected cases. For instance, factors such as the presence of a large lesion leading to hydrocephalus, progressive neurological deficits due to compression of the surrounding neurovascular structures, cerebellar and/or brainstem edema, and severe persistent vestibular dysfunction must be considered and represent major criteria for surgery. In the present study, we reported our experience with 31 patients aged ≥65-year-old who underwent surgical resection for VS.
DOI: 10.5281/zenodo.7501015
title: Rapid formation of new migration route and breeding area by Arctic geese

description: Scripts and datasets used for demographic and climate data analyses in the paper "Rapid formation of new migration route and breeding area by Arctic geese" by Jesper Madsen, Kees H.T. Schreven, Gitte H. Jensen, Fred A. Johnson, Leif Nilsson, Bart A. Nolet and Jorma Pessa
description: Available from https://gitlab.com/gittehojjensen/pink-footed-goose-migration
DOI: 10.5281/zenodo.7501014
title: Rapid formation of new migration route and breeding area by Arctic geese

description: Scripts and datasets used for demographic and climate data analyses in the paper "Rapid formation of new migration route and breeding area by Arctic geese" by Jesper Madsen, Kees H.T. Schreven, Gitte H. Jensen, Fred A. Johnson, Leif Nilsson, Bart A. Nolet and Jorma Pessa
description: Available from https://gitlab.com/gittehojjensen/pink-footed-goose-migration
DOI: 10.34740/kaggle/dsv/4803586
title: RIA News headlines 2002 - 2022
DOI: 10.6084/m9.figshare.21806568
title: input_data_JLS&DE

description: Data used in the scientific work "The limits of stress-tolerance for diapausing resting stages", by Joana L. Santos and Dieter Ebert
DOI: 10.6084/m9.figshare.21806568.v1
title: input_data_JLS&DE

description: Data used in the scientific work "The limits of stress-tolerance for diapausing resting stages", by Joana L. Santos and Dieter Ebert
DOI: 10.34740/kaggle/dsv/4803600
title: RIA News headlines 2002 - 2022
DOI: 10.6084/m9.figshare.21806583
title: scripts_analysis_figures_JLS&DE

description: Scripts used for analysis and figures of the scientific work "The limits of stress-tolerance for diapausing resting stages", by Joana L. Santos and Dieter Ebert
DOI: 10.6084/m9.figshare.21806583.v1
title: scripts_analysis_figures_JLS&DE

description: Scripts used for analysis and figures of the scientific work "The limits of stress-tolerance for diapausing resting stages", by Joana L. Santos and Dieter Ebert
DOI: 10.5281/zenodo.7501789
title: Link to dataset related to article "The epigenetic enzyme DOT1L orchestrates vascular smooth muscle cell-monocyte crosstalk and protects against atherosclerosis via the NF-κB pathway "

description: Link to dataset related to article "The epigenetic enzyme DOT1L orchestrates vascular smooth muscle cell-monocyte crosstalk and protects against atherosclerosis via the NF-κB pathway" Abstract <strong>Aims: </strong> Histone H3 dimethylation at lysine 79 is a key epigenetic mark uniquely induced by methyltransferase disruptor of telomeric silencing 1-like (DOT1L). We aimed to determine whether DOT1L modulates vascular smooth muscle cell (VSMC) phenotype and how it might affect atherosclerosis in vitro and in vivo, unravelling the related mechanism. <strong>Methods and results: </strong> Gene expression screening of VSMCs stimulated with the BB isoform of platelet-derived growth factor led us to identify Dot1l as an early up-regulated epigenetic factor. Mouse and human atherosclerotic lesions were assessed for Dot1l expression, which resulted specifically localized in the VSMC compartment. The relevance of Dot1l to atherosclerosis pathogenesis was assessed through deletion of its gene in the VSMCs via an inducible, tissue-specific knock-out mouse model crossed with the ApoE-/- high-fat diet model of atherosclerosis. We found that the inactivation of Dot1l significantly reduced the progression of the disease. By combining RNA- and H3K79me2-chromatin immunoprecipitation-sequencing, we found that DOT1L and its induced H3K79me2 mark directly regulate the transcription of Nf-κB-1 and -2, master modulators of inflammation, which in turn induce the expression of CCL5 and CXCL10, cytokines fundamentally involved in atherosclerosis development. Finally, a correlation between coronary artery disease and genetic variations in the DOT1L gene was found because specific polymorphisms are associated with increased mRNA expression. <strong>Conclusion: </strong> DOT1L plays a key role in the epigenetic control of VSMC gene expression, leading to atherosclerosis development. Results identify DOT1L as a potential therapeutic target for vascular diseases.
DOI: 10.5281/zenodo.7501788
title: Link to dataset related to article "The epigenetic enzyme DOT1L orchestrates vascular smooth muscle cell-monocyte crosstalk and protects against atherosclerosis via the NF-κB pathway "

description: Link to dataset related to article "The epigenetic enzyme DOT1L orchestrates vascular smooth muscle cell-monocyte crosstalk and protects against atherosclerosis via the NF-κB pathway" Abstract <strong>Aims: </strong> Histone H3 dimethylation at lysine 79 is a key epigenetic mark uniquely induced by methyltransferase disruptor of telomeric silencing 1-like (DOT1L). We aimed to determine whether DOT1L modulates vascular smooth muscle cell (VSMC) phenotype and how it might affect atherosclerosis in vitro and in vivo, unravelling the related mechanism. <strong>Methods and results: </strong> Gene expression screening of VSMCs stimulated with the BB isoform of platelet-derived growth factor led us to identify Dot1l as an early up-regulated epigenetic factor. Mouse and human atherosclerotic lesions were assessed for Dot1l expression, which resulted specifically localized in the VSMC compartment. The relevance of Dot1l to atherosclerosis pathogenesis was assessed through deletion of its gene in the VSMCs via an inducible, tissue-specific knock-out mouse model crossed with the ApoE-/- high-fat diet model of atherosclerosis. We found that the inactivation of Dot1l significantly reduced the progression of the disease. By combining RNA- and H3K79me2-chromatin immunoprecipitation-sequencing, we found that DOT1L and its induced H3K79me2 mark directly regulate the transcription of Nf-κB-1 and -2, master modulators of inflammation, which in turn induce the expression of CCL5 and CXCL10, cytokines fundamentally involved in atherosclerosis development. Finally, a correlation between coronary artery disease and genetic variations in the DOT1L gene was found because specific polymorphisms are associated with increased mRNA expression. <strong>Conclusion: </strong> DOT1L plays a key role in the epigenetic control of VSMC gene expression, leading to atherosclerosis development. Results identify DOT1L as a potential therapeutic target for vascular diseases.
DOI: 10.4225/41/59fa9e1970fab
title: cosmine cover

description: This dataset is a CT scan of the braincase and skull roof of a fossil lungfish from the Gogo Formation, Western Australia
DOI: 10.5281/zenodo.7501825
title: Open Plant Phenotyping Database Seedling Images

description: The Open Plant Phenotyping Database [OPPD] is a public dataset for visual recognition tasks on images of plant seedlings. The dataset consists of 7,590 images with 315,038 plant objects, representing 64,292 individual plants from 47 different species. Each plant species has been cultivated using three growth conditions (ideal, drought and natural) and tracked temporally to achieve high intra-species variability. This is a subset of the .jpg images available at https://gitlab.au.dk/AUENG-Vision/OPPD/-/archive/master/OPPD-master.zip in the folder: /DATA/images_plants/1COMF/
DOI: 10.5281/zenodo.7501824
title: Open Plant Phenotyping Database Seedling Images

description: The Open Plant Phenotyping Database [OPPD] is a public dataset for visual recognition tasks on images of plant seedlings. The dataset consists of 7,590 images with 315,038 plant objects, representing 64,292 individual plants from 47 different species. Each plant species has been cultivated using three growth conditions (ideal, drought and natural) and tracked temporally to achieve high intra-species variability. This is a subset of the .jpg images available at https://gitlab.au.dk/AUENG-Vision/OPPD/-/archive/master/OPPD-master.zip in the folder: /DATA/images_plants/1COMF/
DOI: 10.5281/zenodo.7501818
title: Dataset related to article "PET/CT-based radiomics of mass-forming intrahepatic cholangiocarcinoma improves prediction of pathology data and survival "

description: This record contains raw data related to article "PET/CT-based radiomics of mass-forming intrahepatic cholangiocarcinoma improves prediction of pathology data and survival" Abstract <strong>Purpose: </strong> Intrahepatic cholangiocarcinoma (IHC) is an aggressive disease with few reliable preoperative biomarkers. This study aims to elucidate if radiomics extracted from preoperative [18F]FDG PET/CT may grant a non-invasive biological characterization of IHC and predict outcome after complete resection of the tumor. <strong>Methods: </strong> All patients preoperatively imaged by [18F]FDG PET/CT who underwent hepatectomy for mass-forming IHC in the period 2010-2019 were retrospectively evaluated. On PET images, manual slice-by-slice segmentation of IHC was performed (Tumor-VOI). A 5-mm margin region was semi-automatically generated around the tumor (Margin-VOI). Textural analysis was performed using the LifeX software. Analyzed outcomes included tumor grading (G3 vs. G1-2), microvascular invasion (MVI), overall survival (OS), and progression-free survival (PFS). The performances of the combined clinical-radiomic models were compared with those of standard clinical models. <strong>Results: </strong> Overall, 74 patients (40 females, median age 68 years) were included. Considering tumor grading and MVI, the models combining the clinical data and radiomics of the Tumor-VOI had better performances than the clinical ones (AUC = 0.78 vs. 0.72 for grading; 0.87 vs. 0.78 for MVI). The inclusion into the models of radiomics of the Margin-VOI further improved the prediction of grading (AUC = 0.83), but not of MVI. Considering OS and PFS, the models including the preoperative clinical data and radiomics of the Tumor-VOI and Margin-VOI had better performances than the pure clinical ones (C-index = 0.81 vs. 0.76 for OS; 0.81 vs. 0.72 for PFS) and similar to the models including the pathology and postoperative data (C-index = 0.81 for OS; 0.79 for PFS). No model retained the standard SUV measures. <strong>Conclusion: </strong> The PET-based radiomics of IHC can predict pathology data and allow a reliable preoperative evaluation of prognosis. The radiomics of both the tumoral and peritumoral areas had clinical relevance. The combined clinical-radiomic models outperformed the pure preoperative clinical ones and achieved performances non-inferior to the postoperative models.
DOI: 10.5281/zenodo.7501817
title: Dataset related to article "PET/CT-based radiomics of mass-forming intrahepatic cholangiocarcinoma improves prediction of pathology data and survival "

description: This record contains raw data related to article "PET/CT-based radiomics of mass-forming intrahepatic cholangiocarcinoma improves prediction of pathology data and survival" Abstract <strong>Purpose: </strong> Intrahepatic cholangiocarcinoma (IHC) is an aggressive disease with few reliable preoperative biomarkers. This study aims to elucidate if radiomics extracted from preoperative [18F]FDG PET/CT may grant a non-invasive biological characterization of IHC and predict outcome after complete resection of the tumor. <strong>Methods: </strong> All patients preoperatively imaged by [18F]FDG PET/CT who underwent hepatectomy for mass-forming IHC in the period 2010-2019 were retrospectively evaluated. On PET images, manual slice-by-slice segmentation of IHC was performed (Tumor-VOI). A 5-mm margin region was semi-automatically generated around the tumor (Margin-VOI). Textural analysis was performed using the LifeX software. Analyzed outcomes included tumor grading (G3 vs. G1-2), microvascular invasion (MVI), overall survival (OS), and progression-free survival (PFS). The performances of the combined clinical-radiomic models were compared with those of standard clinical models. <strong>Results: </strong> Overall, 74 patients (40 females, median age 68 years) were included. Considering tumor grading and MVI, the models combining the clinical data and radiomics of the Tumor-VOI had better performances than the clinical ones (AUC = 0.78 vs. 0.72 for grading; 0.87 vs. 0.78 for MVI). The inclusion into the models of radiomics of the Margin-VOI further improved the prediction of grading (AUC = 0.83), but not of MVI. Considering OS and PFS, the models including the preoperative clinical data and radiomics of the Tumor-VOI and Margin-VOI had better performances than the pure clinical ones (C-index = 0.81 vs. 0.76 for OS; 0.81 vs. 0.72 for PFS) and similar to the models including the pathology and postoperative data (C-index = 0.81 for OS; 0.79 for PFS). No model retained the standard SUV measures. <strong>Conclusion: </strong> The PET-based radiomics of IHC can predict pathology data and allow a reliable preoperative evaluation of prognosis. The radiomics of both the tumoral and peritumoral areas had clinical relevance. The combined clinical-radiomic models outperformed the pure preoperative clinical ones and achieved performances non-inferior to the postoperative models.
DOI: 10.6084/m9.figshare.20584620.v1
title: Foreign minister Lord Palmerston’s letter to Minister of the Emperor of China (1840)

description: In the <em>Lord Palmerston’s letter to Minister of the Emperor of China (1840)</em>, the British foreign minister Palmerston informed Minister of the Emperor of China Zexu Lin that the British Queen had sent a force to the Coast of China to demand from the Emperor satisfaction and redress for injuries and insults inflicted by Chinese Authorities upon British subjects. This letter has two Chinese versions. One was translated by a Russian missionary serving in the Qing court--Palmestowa (this name is transliterated from “帕勒灭斯托汪” in Chinese), and the other was translated by Chinese Secretary and Interpreter of Britain--John Robert Morrison (1814-1843).
DOI: 10.6084/m9.figshare.20578164
title: Chinese ambassador Burlingame's letter to Western countries (1867)

description: In 1867, China sent its first embassy—the Burlingame mission—to America and Europe to promote China’s relations with the West. In Burlingame’s letter of credence addressed by Emperor Daoguang to the Queen of England and Other Western Countries (1868), the emperor appointed Burlingame as ambassador and requested the addressee to accord him credence. The letter was translated by J. M. L. Browny, the first secretary of the Chinese mission (Gumpach, J. von.,1872, p. 67; Y. Li, 2012, p. 371).
DOI: 10.6084/m9.figshare.20578164.v1
title: Chinese ambassador Burlingame's letter to Western countries (1867)

description: In 1867, China sent its first embassy—the Burlingame mission—to America and Europe to promote China’s relations with the West. In Burlingame’s letter of credence addressed by Emperor Daoguang to the Queen of England and Other Western Countries (1868), the emperor appointed Burlingame as ambassador and requested the addressee to accord him credence. The letter was translated by J. M. L. Browny, the first secretary of the Chinese mission (Gumpach, J. von.,1872, p. 67; Y. Li, 2012, p. 371).
DOI: 10.6084/m9.figshare.21731216
title: Nonparametric Control Charts for Monitoring Serial Dependence based on Ordinal Patterns

description: We consider the problem of monitoring for the existence of serial dependence in real-valued and continuously distributed processes. These can exist when a process goes out-of-control. Besides, as many control charts are designed under the assumption of independent and identically distributed observations, the validity of this assumption needs to be checked. In the literature, the majority of studies handled this problem by using a specific case of autoregressive moving-average time series models. Also a moving-window approach is often considered, which leads to the drawback that at least a window length of observations need to be collected before an out-of-control situation can be detected. Here, we use ordinal patterns and propose charts that are fully nonparametric and distribution-free, have a unique chart design, and can be used almost instantaneously at the start of process monitoring. The proposed control charts do not require any model fitting, thus, eliminating the problems associated with estimation errors, but might be used as part of a Phase-I study. Through a comprehensive performance comparison study under various out-of-control scenarios, the effectiveness of the charts in uncovering serial dependence is shown and recommendations for selection are given. Implementations of the proposed charts are illustrated by using batch yield data from a chemical process.
DOI: 10.6084/m9.figshare.21731216.v2
title: Nonparametric Control Charts for Monitoring Serial Dependence based on Ordinal Patterns

description: We consider the problem of monitoring for the existence of serial dependence in real-valued and continuously distributed processes. These can exist when a process goes out-of-control. Besides, as many control charts are designed under the assumption of independent and identically distributed observations, the validity of this assumption needs to be checked. In the literature, the majority of studies handled this problem by using a specific case of autoregressive moving-average time series models. Also a moving-window approach is often considered, which leads to the drawback that at least a window length of observations need to be collected before an out-of-control situation can be detected. Here, we use ordinal patterns and propose charts that are fully nonparametric and distribution-free, have a unique chart design, and can be used almost instantaneously at the start of process monitoring. The proposed control charts do not require any model fitting, thus, eliminating the problems associated with estimation errors, but might be used as part of a Phase-I study. Through a comprehensive performance comparison study under various out-of-control scenarios, the effectiveness of the charts in uncovering serial dependence is shown and recommendations for selection are given. Implementations of the proposed charts are illustrated by using batch yield data from a chemical process.