cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17694260
title: species list.docx

description: Species list of Qiupu river (China)
DOI: 10.6084/m9.figshare.17694260.v1
title: species list.docx

description: Species list of Qiupu river (China)
DOI: 10.6084/m9.figshare.17040227
title: Supplementary Material for: Identification of 8 feature genes related to clear cell renal cell carcinoma progression based on co-expression analysis

description: Backgrounds: To screen biomarkers related to clear cell renal cell carcinoma (ccRCC) progression and prognosis. Methods: 1,026 ccRCC-related genes were dug from 494 ccRCC samples in TCGA based on weighted gene co-expression network analysis, and 7 modules were identified. Afterwards, GO and KEGG enrichment analyses were conducted on modules of interest. Genes in these modules were taken as the input to construct a protein-protein interaction network. Thereafter, 30 genes with the highest connectivity were taken as core genes. Univariate Cox regression, LASSO Cox regression and multivariate Cox regression analyses were performed on core genes. Univariate and multivariate Cox regression analyses were performed on patient’s clinical characteristics and risk scores. Results: Stage displayed significantly strong correlations with green module and red module (p&lt;0.001). Genes in modules participated in biological functions including T cell proliferation and regulation of lymphocyte activation. GSEA showed that high- and low-risk groups exhibited significant enrichment differences in pathways related to immunity, cell migration and invasion. Immune infiltration analysis also presented strong correlation between expression of these 8 genes and immune cell infiltration in ccRCC samples. It was displayed that risk score could be an independent factor to assess patient’s prognosis. Conclusion: We determined biomarkers relevant to ccRCC progression, offering candidate targets for ccRCC treatment.
DOI: 10.6084/m9.figshare.17040227.v1
title: Supplementary Material for: Identification of 8 feature genes related to clear cell renal cell carcinoma progression based on co-expression analysis

description: Backgrounds: To screen biomarkers related to clear cell renal cell carcinoma (ccRCC) progression and prognosis. Methods: 1,026 ccRCC-related genes were dug from 494 ccRCC samples in TCGA based on weighted gene co-expression network analysis, and 7 modules were identified. Afterwards, GO and KEGG enrichment analyses were conducted on modules of interest. Genes in these modules were taken as the input to construct a protein-protein interaction network. Thereafter, 30 genes with the highest connectivity were taken as core genes. Univariate Cox regression, LASSO Cox regression and multivariate Cox regression analyses were performed on core genes. Univariate and multivariate Cox regression analyses were performed on patient’s clinical characteristics and risk scores. Results: Stage displayed significantly strong correlations with green module and red module (p&lt;0.001). Genes in modules participated in biological functions including T cell proliferation and regulation of lymphocyte activation. GSEA showed that high- and low-risk groups exhibited significant enrichment differences in pathways related to immunity, cell migration and invasion. Immune infiltration analysis also presented strong correlation between expression of these 8 genes and immune cell infiltration in ccRCC samples. It was displayed that risk score could be an independent factor to assess patient’s prognosis. Conclusion: We determined biomarkers relevant to ccRCC progression, offering candidate targets for ccRCC treatment.
DOI: 10.48366/r160596
title: Application of Spectral Angle Mapper method in classifiying different physical fetaures from remotely sensed imageries

description: Spectral Angle Mapper (SAM) is one of the leading classification methods because it evaluates spectral similarity to map and classify different features or variables. Here the SAM is used to show its efficiency for several remote sensing applications.
DOI: 10.48366/r160597
title: Application of Spectral Angle Mapper (SAM) method in classifying different physical features from remotely sensed imageries

description: Spectral Angle Mapper (SAM) is one of the leading classification methods because it evaluates spectral similarity to map and classify different features or variables. Here the SAM is used to show its efficiency for several remote sensing applications.
DOI: 10.6084/m9.figshare.14971617.v3
title: Geodetic Constraints on Modeling of the Coseismic Slip and Postseismic Afterslip of the 2020 Mw 7.4 Oaxaca, Mexico, Earthquake

description: The coseismic surface deformation caused by the 2020 Oaxaca earthquake and postseismic deformation are described in Tang et al. paper “Geodetic Constraints on Modeling of Coseismic Slip and Postseismic Afterslip of the 2020 Mw 7.4 Oaxaca Earthquake”. Files named "coseismic-asc InSAR.txt", "coseismic-des InSAR.txt", and "coseismic-GPS.txt" are coseismic displacements obtained from ascending InSAR, descending InSAR, and GPS data. Files named "postseismic-10.txt", "postseismic-30.txt", and "postseismic-60.txt" show the 10-day, 30-day, and 60-day surface deformation after the mainshock. File named "aftershocks.xlsx" is the earthquake catalog 60 days after the mainshock from Servicio Sismológico Nacional.
DOI: 10.5281/zenodo.5535306
title: HIMANIS Guérin

description: The dataset <em>HIMANIS Guérin </em>provides a ground-truth for HTR training (Handwritten Text Recognition) for 1217 images or part of images and 30015 lines (933 images and 22093 lines in Guérin 1; 284 images and 7922 lines in Guérin 2). It was established as part of the HIMANIS research project in collaboration with the READ consortium (Recognition and Enrichment of Archival Documents). The base text is the edition by Paul Guérin, <em>Recueil des documents concernant le Poitou contenus dans les registres de la Chancellerie de France</em>, published between 1881 and 1919. The edition was digitized and OCR processed by the Bibliothèque nationale de France, then encoded by the Ecole nationale des Chartes (http://corpus.enc.sorbonne.fr/actesroyauxdupoitou/), then corrected and enhanced in HIMANIS, esp. for abbreviations and links to digital images (https://github.com/oriflamms/himanis/blob/master/Editions/Guerin_tome1-tome12.xml). The text was aligned line by line on Transkribus by the READ consortium for the acts whose coordinates were indicated in the HIMANIS project, mainly for volumes Paris, Archives nationales, JJ 35 to JJ 91, but supplemented by information for the vol. 12 of Guérin's edition. This dataset comprises two Transkribus exports, enriched with links to images accessible via IIIF protocol in the @corresp attribute of &lt;graphic/&gt; elements. The historical corpus is described in Stutzmann, Dominique, Jean-François Moufflet, and Sébastien Hamel. « La recherche en plein texte dans les sources manuscrites médiévales : enjeux et perspectives du projet HIMANIS pour l’édition électronique ». <em>Médiévales : Langue, textes, histoire</em> 73 (2017): 67‑96. https://doi.org/10.4000/medievales.8198. The present dataset is the training data for the " HIMANIS Chancery M1+ " model, cf. https://readcoop.eu/model/french-and-latin-chancery-documents/
description: {"references": ["Stutzmann, Dominique, Jean-Fran\u00e7ois Moufflet, and S\u00e9bastien Hamel. \u00ab La recherche en plein texte dans les sources manuscrites m\u00e9di\u00e9vales\u202f: enjeux et perspectives du projet HIMANIS pour l'\u00e9dition \u00e9lectronique \u00bb. M\u00e9di\u00e9vales\u202f: Langue, textes, histoire 73 (2017): 67\u201196. https://doi.org/10.4000/medievales.8198"]}
DOI: 10.5281/zenodo.5535305
title: HIMANIS Guérin

description: The dataset <em>HIMANIS Guérin </em>provides a ground-truth for HTR training (Handwritten Text Recognition) for 1217 images or part of images and 30015 lines (933 images and 22093 lines in Guérin 1; 284 images and 7922 lines in Guérin 2). It was established as part of the HIMANIS research project in collaboration with the READ consortium (Recognition and Enrichment of Archival Documents). The base text is the edition by Paul Guérin, <em>Recueil des documents concernant le Poitou contenus dans les registres de la Chancellerie de France</em>, published between 1881 and 1919. The edition was digitized and OCR processed by the Bibliothèque nationale de France, then encoded by the Ecole nationale des Chartes (http://corpus.enc.sorbonne.fr/actesroyauxdupoitou/), then corrected and enhanced in HIMANIS, esp. for abbreviations and links to digital images (https://github.com/oriflamms/himanis/blob/master/Editions/Guerin_tome1-tome12.xml). The text was aligned line by line on Transkribus by the READ consortium for the acts whose coordinates were indicated in the HIMANIS project, mainly for volumes Paris, Archives nationales, JJ 35 to JJ 91, but supplemented by information for the vol. 12 of Guérin's edition. This dataset comprises two Transkribus exports, enriched with links to images accessible via IIIF protocol in the @corresp attribute of &lt;graphic/&gt; elements. The historical corpus is described in Stutzmann, Dominique, Jean-François Moufflet, and Sébastien Hamel. « La recherche en plein texte dans les sources manuscrites médiévales : enjeux et perspectives du projet HIMANIS pour l’édition électronique ». <em>Médiévales : Langue, textes, histoire</em> 73 (2017): 67‑96. https://doi.org/10.4000/medievales.8198. The present dataset is the training data for the " HIMANIS Chancery M1+ " model, cf. https://readcoop.eu/model/french-and-latin-chancery-documents/
description: {"references": ["Stutzmann, Dominique, Jean-Fran\u00e7ois Moufflet, and S\u00e9bastien Hamel. \u00ab La recherche en plein texte dans les sources manuscrites m\u00e9di\u00e9vales\u202f: enjeux et perspectives du projet HIMANIS pour l'\u00e9dition \u00e9lectronique \u00bb. M\u00e9di\u00e9vales\u202f: Langue, textes, histoire 73 (2017): 67\u201196. https://doi.org/10.4000/medievales.8198"]}
DOI: 10.6084/m9.figshare.17694350
title: Supplementary Material for: Alterations in Toll-Like Receptor 7 and -9 mRNA Levels in Lungs after Ovariohysterectomy in a Pyometra Mouse Model

description: <b><i>Background:</i></b> Pyometra (P) leads to sepsis and multiple organ dysfunction syndrome. Toll-like receptors (TLRs) recognize pathogens which can cause P. The aim of this study was to investigate TLR-7 and -9 via the MYD88 pathway and the nuclear factor kappa B (NFκB) response in the uterus of a P mouse model before and after ovariohysterectomy (RP) as well as potential lung injury. <b><i>Materials and Methods:</i></b> 200 female C57BL/6J mice were randomly divided into groups (<i>N</i> = 10/subgroup; sham 1, 2, 3, 7; P1, 2, 3, 7; 1RP1, 2, 3, 7; 2RP1, 2, 3, 7; 3RP1, 2, 3, 7) according to the day of euthanasia. Pathogens were administrated in the groups P and RP in order to induce P. <b><i>Results:</i></b> Alterations in blood chemistry, histopathology, and RT-qPCT analysis before (P) and after RP were observed. Significant correlations were also found between MYD88, NFκB, and TLR9 in P and RP groups in the lungs and in RP groups in the uterus, suggesting that the immune system responded via the TLR9-MYD88 pathway. <b><i>Conclusions:</i></b> This is the first report of immunohistochemical TLR-7 and -9 localization and of TLR-7, -9, MYD88, and NFκB mRNA expression in the uterus causing lung injury in a P mouse model.
DOI: 10.48370/ofd/iny1tr/ive7bk
title: HMW_Equisetum_arvense_L._H_1975.tif

description: :unav
DOI: 10.48370/ofd/iny1tr
title: Skrzyp polny (Equisetum arvense L.), 1975

description: Herbarium
DOI: 10.26036/cnp0001129
title: Whole genome sequence of Capsicum annuum

description: Whole genome sequence of Capsicum annuum
DOI: 10.26036/cnp0002213
title: 樱桃重测序数据

description: 樱桃资源重测序数据
DOI: 10.26036/cnp0002211
title: Transcriptome sequencing in cultivated strawberries with available Raw sequence reads

description: This project provides transcriptome sequencing Raw data in the fruits of strawberry cv ‘Xiaobai’, including overexpressing FaWRKY44, FaWRKY46 and control samples. The total number of samples is 9.
DOI: 10.26036/cnp0002319
title: Single-cell reconstruction of the Chinese tongue sole (Cynoglossus semilaevis) ovary

description: Oogenesis is a highly orchestrated process that depends on regulation by autocrine/paracrine hormones and growth factors. The molecular mechanisms that regulate fish oogenesis remain elusive. Here, we performed a single-cell RNA sequencing (scRNA-seq) analysis of the molecular signatures of distinct ovarian cell categories in adult Chinese tongue sole. We characterized the successive stepwise development of three germ cell subtypes. Notably, we identified the cellular composition of fish follicle walls, including four granulosa cell types and one theca cell type, and we proposed important transcription factors (TFs) showing high activity in the regulation of cell identity. Moreover, we constructed a multilineage interactome network of fish oogenesis and validated the conservation of the NOTCH signalling pathway in niche–germline bidirectional communication across vertebrates; however, the TGF-β signalling pathway showed some degree of divergence, ascribed to the variability in the expression pattern of bmp15 in germ cells among species. Further analysis of the specific expression patterns of ovulation-associated genes revealed conserved essential features of ovulation between Chinese tongue sole and mammals. Additionally, a systems biology analysis of the homologous genes shared by Chinese tongue sole and macaques revealed remarkably conserved biological processes in germ cells and granulosa cells across vertebrates. Our results provide key insights into the cell-type-specific mechanisms underlying fish oogenesis at a single-cell resolution, which offers important clues for exploring fish breeding mechanisms and the evolution of vertebrate reproductive systems.
DOI: 10.26036/cnp0002475
title: 24 samples of rumen fluid metabolome analysis on Holstein dairy cows

description: We investigate the rumen fluid metabolites profiles in lactating dairy cows with subacute rumen acidosis induced by a high-grain diet. This was obtained with the LC-MS analysis of rumen fluid.
DOI: 10.26036/cnp0002498
title: Chromosome-Level Genome Assembly of the Green Peafowl (Pavo muticus)

description: The green peafowl (Pavo muticus) is facing a high risk of extinction due to the long-lasting and widespread threats of poaching and habitat conversion. Evaluation of genome-wide consequences of its continuous declining and making genetic rescue plans to recover its population are badly needed. Here, we presented a chromosome-level genome assembly of a green peafowl genome with high quality, contiguity and accuracy assembled by PacBio sequencing, DNBSEQ short-read sequencing, and Hi-C sequencing technologies.
DOI: 10.26036/cnp0002455
title: Influence of sequencing depth on the fidelity and sensitivity of 1%-5% low-frequency mutation detection

description: Influence of sequencing depth on the fidelity and sensitivity of 1%-5% low-frequency mutation detection and recommendations for standardization of sequencing depth calculation
DOI: 10.26036/cnp0002471
title: 番茄叶片转录组

description: 韩国假单胞菌缓解番茄干旱胁迫
DOI: 10.26036/cnp0002499
title: Screening of trichoderma at low temperature

description: C47-3 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
DOI: 10.26036/cnp0002502
title: Whole Genome Sequencing Revealing Population Structure of Large Yellow Croakers

description: Population structure of large yellow croakers inhabitating in Chinese coastal waters was revealed using whole genome sequencing (WGS) technology.
DOI: 10.6084/m9.figshare.16834542.v1
title: Discovery of novel antischistosomal scaffolds from the open access Pandemic Response Box

description: Treatment and control of schistosomiasis rely on a single drug, praziquantel. New orally active antischistosomals featuring novel molecular scaffolds are urgently needed to prevent the emergence of resistance. We screened 400 drug-like compounds contained in the open-access Pandemic Response Box (PRB) against newly transformed schistosomula (NTS) at a concentration of 10 µM scoring death, changes in motility, and morphological alterations. Compounds displaying an activity ≥66% at 72 h underwent testing against adult <i>Schistosoma mansoni in vitro</i>. Fast-acting (≥66% at 24 h), nontoxic drugs focusing on late-stage and approved drugs were investigated in the patent <i>S. mansoni</i> mouse model. We identified 26 hits active against NTS, of which 17 elicited ≥66% activity against adult <i>S. mansoni</i> following 24 h of drug exposure. The highest activity against <i>adult S. mansoni</i> was observed with MMV1581558 (EC<sub>50</sub> value of 0.18 ± 0.01 µM) and nitazoxanide (0.47 ± 0.07 µM). Of the five compounds tested <i>in vivo</i>, MMV1581558 and the approved drug ozanimod reduced average worm burden versus controls by 42 % and 36 %, respectively, after a single oral dose of 200 mg/kg bodyweight in mice harboring a chronic <i>S. mansoni</i> infection. MMV1581558 discovered from screening the PRB represents a novel antischistosomal scaffold with high <i>in vitro</i> antischistosomal activity amenable to chemical modification for drug development.
DOI: 10.48370/ofd/zwwxcd/xfintj
title: HMW_Poa_pratensis_L._s._str._H_3204.jpg

description: :unav
DOI: 10.48370/ofd/zwwxcd
title: Wiechlina łąkowa (Poa pratensis L. s. str.), 3204

description: Herbarium
DOI: 10.21227/kzzr-g366
title: Network Penetration Testing Interview: 5 Questions an Answers

description: Network penetration testing is a complicated step that requires a lot of research and preparation going into it. Once you’ve decided on conducting the procedure, it’s equally important to select a third-party service provider that upholds quality and possesses adequate experience. For this, there are a series of network penetration testing interview questions – and desired answers – you can keep in mind when screening potential service providers.The right network penetration testing and security process should give you actionable insights about the network and the system for the right kind of protection. That means, the right VAPT service provider will be conducted by the right kind of professionals with the required accreditations and the ability to think on their feet for impersonating hackers.
DOI: 10.48370/ofd/efleqf/ekebqp
title: HMW_Eryngium_planum_L._H_8237.jpg

description: :unav
DOI: 10.48370/ofd/efleqf
title: Mikołajek płaskolistny (Eryngium planum L.), 8237

description: Herbarium
DOI: 10.48370/ofd/ar1rjw/ewhsb1
title: HMW_Dianthus_compactus_Kit._H_4738.jpg

description: :unav
DOI: 10.48370/ofd/ar1rjw
title: Goździk skupiony (Dianthus compactus Kit.), 4738

description: Herbarium
DOI: 10.48370/ofd/8mo0iv/sobfga
title: HMW_Dianthus_compactus_Kit._H_4791.jpg

description: :unav
DOI: 10.48370/ofd/8mo0iv
title: Goździk skupiony (Dianthus compactus Kit.), 4791

description: Herbarium
DOI: 10.48370/ofd/wsqhfm/m1o9xd
title: HMW_Brachypodium_sylvaticum_(Huds.)_P._Beauv._H_1644.jpg

description: :unav
DOI: 10.48370/ofd/wsqhfm
title: Kłosownica leśna (Brachypodium sylvaticum (Huds.) P. Beauv.), 1644

description: Herbarium
DOI: 10.48370/ofd/kljvlu/lpaw2o
title: HMW_Galeopsis_ladanum_L._H_1907.jpg

description: :unav
DOI: 10.48370/ofd/kljvlu
title: Poziewnik polny (Galeopsis ladanum L.), 1907

description: Herbarium
DOI: 10.6084/m9.figshare.17694365
title: Data availability for Mirusviricetes and other marine NCLDVs

description: Data availability includes supplemental tables, FASTA files corresponding to the marine NCLDV genomic database, genes and proteins.
DOI: 10.6084/m9.figshare.17694365.v1
title: Data availability for Mirusviricetes and other marine NCLDVs

description: Data availability includes supplemental tables, FASTA files corresponding to the marine NCLDV genomic database, genes and proteins.
DOI: 10.5281/zenodo.5172132
title: Description of the Features of the Open Research Knowledge Graph as a Crowdsourcing Platform based on the 4 Pillars of Crowdsourcing

description: This dataset provides the description of the features of the Open Research Knowledge Graph (ORKG) based on the 4 pillars of crowdsourcing according to the reference model for crowdsourcing by Hosseini et al. [1]. This overview represents the features of the current implementation status of ORKG as a crowdsourcing platform. [1] M. Hosseini, K. Phalp, J. Taylor, and R. Ali, "The Four Pillars of Crowdsourcing: A Reference Model", in 2014 IEEE 8th International Conference on Research Challenges in Information Science (RCIS). IEEE, 2014, pp. 1–12.
DOI: 10.5281/zenodo.4925668
title: Description of the Features of the Open Research Knowledge Graph as a Crowdsourcing Platform based on the 4 Pillars of Crowdsourcing

description: This dataset provides the description of the features of the Open Research Knowledge Graph (ORKG) based on the 4 pillars of crowdsourcing according to the reference model for crowdsourcing by Hosseini et al. [1]. This overview represents the features of the current implementation status of ORKG as a crowdsourcing platform. [1] M. Hosseini, K. Phalp, J. Taylor, and R. Ali, "The Four Pillars of Crowdsourcing: A Reference Model", in 2014 IEEE 8th International Conference on Research Challenges in Information Science (RCIS). IEEE, 2014, pp. 1–12.
DOI: 10.15468/q6qchk
title: 994. NICOTIANA INSECTICIDA

description: This dataset contains the digitized treatments in Plazi based on the original journal article Chase, Mark W., Christenhusz, Maarten J. M. (2021): 994. NICOTIANA INSECTICIDA. Curtis's Botanical Magazine 38 (3): 350-364, DOI: 10.1111/curt.12402, URL: http://dx.doi.org/10.1111/curt.12402
DOI: 10.48370/ofd/knflpz/oqxexk
title: HMW_Potentilla_arenaria_Borkh._H_9340.jpg

description: :unav
DOI: 10.48370/ofd/knflpz
title: Pięciornik piaskowy (Potentilla arenaria Borkh.), 9340

description: Herbarium
DOI: 10.15468/z69tx9
title: Epidendrum katarun-yariku (Orchidaceae), a new species of the Schistochilum group from the tepuis of the Guiana Highlands in South America

description: This dataset contains the digitized treatments in Plazi based on the original journal article Hágsater, Eric, Wrazidlo, Mateusz (2020): Epidendrum katarun-yariku (Orchidaceae), a new species of the Schistochilum group from the tepuis of the Guiana Highlands in South America. Phytotaxa 472 (1): 33-40, DOI: 10.11646/phytotaxa.472.1.4
DOI: 10.6084/m9.figshare.17694553
title: new data of v2 from Porosity of the porous carbonate rocks in the Jingfengqiao–Baidiao area based on finite automata

description: new data of version 2
DOI: 10.6084/m9.figshare.17694553.v1
title: new data of v2 from Porosity of the porous carbonate rocks in the Jingfengqiao–Baidiao area based on finite automata

description: new data of version 2
DOI: 10.6084/m9.figshare.17694556
title: LetPub - Certificate 2021(1) from Porosity of the porous carbonate rocks in the Jingfengqiao–Baidiao area based on finite automata

description: to prove the paper had been polished
DOI: 10.6084/m9.figshare.17694556.v1
title: LetPub - Certificate 2021(1) from Porosity of the porous carbonate rocks in the Jingfengqiao–Baidiao area based on finite automata

description: to prove the paper had been polished
DOI: 10.6084/m9.figshare.9616319.v14
title: MUG500+ Repository

description: Database of 500 High-resolution Healthy Human Skulls and 29 Craniotomy Skulls and Implants.<br>If you use any part of the dataset, please use the following references for citation in your work:<br>Li J., et al. MUG500+ Repository. Figshare, 2021. DOI: 10.6084/m9.figshare.9616319<br>Li J., et al. MUG500+: Database of 500 High-resolution Healthy Human Skulls and 29 Craniotomy Skulls and Implants. Data in Brief, Elsevier, 2021.<br>A recorded tutorial video about the semi-automatic cranial implant design workflow with Geomagic Sculpt can be viewed at:<br>https://www.youtube.com/watch?v=FzaR3ydjaSc<br>
DOI: 10.6084/m9.figshare.17694575
title: UCSDSWB

description: ucsdswb
DOI: 10.6084/m9.figshare.17694575.v1
title: UCSDSWB

description: ucsdswb