cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/gt4ss-7a471
title: 91+92 host and prey cells

description: Raw data files of 91+92 host and prey cells
description: <strong>Tilt Series Date:</strong> 2015-06-05</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Chris Hayes and David Low</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-05-17/rawdata/</p>PS95-tomo0006.mrc,  Tilt Series (Pixel Size 0.331 nm), 3.7 GB  
        
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        PS95-tomo0006_full.rec,  Reconstruction (Pixel Size 1.324 nm), 430.6 MB  
        
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        psa2015-06-05-17_slicer19380.png, , 1.2 MB  
        
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DOI: 10.22002/fjq22-xpc32
title: V. cholerae

description: for MSHA pili
description: <strong>Tilt Series Date:</strong> 2016-01-04</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O1 biovar El Tor</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> SIRT</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-01-04-10/3dimage_73021/</p>20160104_Vcholerae_MSHA_10010_SIRT_2K.rec,  Reconstruction (Pixel Size 0.0 nm), 14.2 GB  
        
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        20160104_Vcholerae_MSHA_10010_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
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        20160104_Vcholerae_MSHA_10010.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
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DOI: 10.15468/dl.fxuxre
title: Occurrence Download

description: A dataset containing 4492 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lythrum virgatum"
 ]
}

 The dataset includes 4492 records from 183 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036343-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/86vx9-e3d15
title: V. cholerae

description: for MSHA pili
description: <strong>Tilt Series Date:</strong> 2016-01-04</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O1 biovar El Tor</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> SIRT</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-01-04-9/3dimage_73078/</p>20160104_Vcholerae_MSHA_10009_SIRT_2K.rec,  Reconstruction (Pixel Size 0.0 nm), 7.1 GB  
        
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        20160104_Vcholerae_MSHA_10009_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
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        20160104_Vcholerae_MSHA_10009.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
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DOI: 10.15468/dl.gwhbq4
title: Occurrence Download

description: A dataset containing 142485 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Campanula glomerata"
 ]
}

 The dataset includes 142485 records from 1017 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036259-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15541265
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250529c Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250529c Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.15541266
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250529c Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250529c Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.14288/1.0423565
title: Adaptation to distinct habitats is maintained by contrasting selection at different life stages in sunflower ecotypes

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;&lt;span lang="EN"&gt;Conspecific populations living in adjacent but contrasting microenvironments represent excellent systems for studying natural selection. These systems are valuable because gene flow is expected to force genetic homogeneity except at loci experiencing divergent selection. A history of reciprocal transplant and common garden studies in such systems, and a growing number of genomic studies, have contributed to understanding how selection operates in natural populations. While selection can vary across different fitness components and life stages, few studies have investigated how this ultimately affects allele frequencies and the maintenance of divergence between populations. Here, we study two sunflower ecotypes in distinct, adjacent habitats by combining demographic models with genome-wide sequence data to estimate fitness and allele frequency change at multiple life stages. This framework allows us to estimate that only local ecotypes are likely to experience positive population growth&lt;/span&gt; &lt;span lang="EN"&gt;(λ&gt;1) and that the maintenance of divergent adaptation appears to be mediated via habitat- and life-stage-specific selection. We identify genetic variation, significantly driven by loci in chromosomal inversions, associated with different life history strategies in neighbouring ecotypes that optimize different fitness components and may contribute to the maintenance of distinct ecotypes. &lt;/span&gt;&lt;/p&gt;
DOI: 10.14288/1.0423567
title: Data from: The influence of human activity on predator-prey spatiotemporal overlap

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Despite growing evidence of widespread impacts of humans on animal behavior, our understanding of how humans reshape species interactions remains limited. Here, we present a framework that draws on key concepts from behavioral and community ecology to outline four primary pathways by which humans can alter predator-prey spatiotemporal overlap. We suggest that predator-prey dyads can exhibit similar or opposite responses to human activity with distinct outcomes for predator diet, predation rates, population demography, and trophic cascades. We demonstrate how to assess these behavioral response pathways with hypothesis testing, using temporal activity data for 178 predator-prey dyads from published camera trap studies on terrestrial mammals. We found evidence for each of the proposed pathways, revealing multiple patterns of human influence on predator-prey activity and overlap. Our framework and case study highlight current challenges, gaps, and advances in linking human activity to animal behavior change and predator-prey dynamics. By using a hypothesis-driven approach to estimate the potential for altered species interactions, we can anticipate the ecological consequences of human activities on whole communities.&lt;/p&gt;
DOI: 10.14288/1.0431443
title: Habitat Connectivity Using Conefor 2.6 For Salt Spring Island, British Columbia

description: Habitat connectivity is fundamental for animal species dispersal and gene flow. However, habitats are becoming increasingly fragmented due to anthropogenic activities. In this study, I analyzed habitat connectivity on Salt Spring Island, British Columbia, from the perspective of the brown creeper bird, the red squirrel, and the red-legged frog. These umbrella species were selected since their survival is at risk with global warming that is altering their fragile habitat. The research objectives were: assessing network connectivity; identifying the most important habitat patches; and identifying the most important disturbed areas for restoration. The methods included: creating habitat patches and links based on specific habitat requirements using the Landsat landcover classes and Light Detection and Ranging data; assigning a quality to each landuse category to calculate the area-weighted quality of each patch; and performing the connectivity analysis in Conefor 2.6 using the Probability of Connectivity index and its associated metrics (sum dPC and dNC) as they were proven to perform the best for modeling habitat connectivity. A Probability of Connectivity value of 0.0000344 was computed for frog compared to 0.1081950 and 0.1175361 for the bird and the squirrel, respectively. These low values suggest that all habitats may require restoration, but efforts may be focus on the frog since it is significantly less connected. In total, 304 patches covering 6.7 km2 were identified as areas of very high functional connectivity that may require protection. Additionally, 31.3% of this total area was found to be disturbed by agriculture, urban area, high soil erosion, and/or major road(s), which may indicate an important need for rehabilitation. The best way to enhance the species survival and dispersal rate may be to buffer existing patches with woodland, and develop corridors and hub patches that are large and rich in resources to provide both more connectivity and more habitat.
DOI: 10.14288/1.0435200
title: Indigenous Health and Cultural Safety

description: The UPROOT team at UBC, with the help of an Indigenous governance structure, developed the faculty’s first mandatory Indigenous-focused course within the Doctor of Pharmacy program. In 2022, the course completed its second iteration.
DOI: 10.14288/1.0435241
title: A Community- Centered Approach to Improving Medication Delivery Services Impacted by Covid-19

description: The project aims to identify and improve current medication accessibility services for the four communities that have been exacerbated by COVID-19 pandemic measures. This project will utilize principles of community-specific, culturally safe, and ethical engagement frameworks throughout all of the activities, honouring First Nations engagement frameworks throughout all of the activities, honouring First Nations Ownership, Control, Accessibility, and Possession (OCAP). Therefore, our methodology could vary depending on community desires, but we will be prepared to engage with community members, Elders, and local healthcare providers through a variety of means including interviews, surveys, and talking circles.
DOI: 10.14288/1.0423566
title: On the fast track: Hybrids adapt more rapidly than parental populations in a novel environment

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Rates of hybridization are predicted to increase due to climate change and human activity that cause redistribution of species and bring previously isolated populations into contact. At the same time, climate change leads to rapid changes in the environment, requiring populations to adapt rapidly in order to survive. A few empirical cases suggest hybridization can facilitate adaptation despite its potential for incompatibilities and deleterious fitness consequences. Here we use simulations and Fisher’s Geometric model to evaluate the conditions and time frame of adaptation via hybridization in both diploids and haplodiploids. We find that hybrids adapt faster to new environments compared to parental populations in nearly all simulated scenarios, generating a fitness advantage that can offset intrinsic incompatibilities and last for tens of generations, regardless of whether the population was diploid or haplodiploid. Our results highlight the creative role of hybridization and suggest that hybridization may help contemporary populations adapt to the changing climate. However, adaptation by hybrids may well happen at the cost of reduced biodiversity, if previously isolated lineages collapse into one.&lt;/p&gt;
DOI: 10.14288/1.0427417
title: Open Data Training Workshop: Tri-Agency Research Data Management and Ethical Considerations of Open Data Sharing

description: &lt;strong&gt;Objective(s):&lt;/strong&gt; Momentum for open access to research is growing. Funding agencies and publishers are increasingly requiring researchers make their data and research outputs open and publicly available. However, this introduces many challenges, especially when managing potentially sensitive clinical data.&lt;br /&gt; &lt;br /&gt;The aim of this 1 hr virtual workshop is to provide participants with foundational knowledge that supports planning for open data in future research projects.&lt;br /&gt; &lt;br /&gt;Specifically, participants will:&lt;br /&gt; 1. Gain an understanding of the new Tri-Agency Research Data Management policy and the analogous progress of the University of British Columbia's (UBC) Research Data Management (RDM) strategy and how they can be applied.&lt;br /&gt; &lt;br /&gt;2. Gain an understanding of the ethical, privacy, and legal considerations of sharing data.&lt;br /&gt; &lt;br /&gt;3. Learn practical skills for incorporating open data language into REB applications and consent form.&lt;br /&gt; &lt;br /&gt;Workshop Agenda:&lt;br /&gt; &lt;br /&gt;1. "Becoming familiar with the new Tri-Agency Research Data Management Policy" - Speaker: Eugene Barsky, Research Data Librarian, UBC Library&lt;br /&gt; &lt;br /&gt;2. "Ethics and Practical Considerations of Open Data Sharing." - Speaker: Brittney Schichter, Director, Research Integration & Innovation, Provincial Health Service Authority (PHSA) Research and Academic Services&lt;br /&gt; &lt;br /&gt;This workshop draws on work supported by the Digital Research Alliance of Canada.&lt;br /&gt; &lt;br /&gt;&lt;strong&gt;Data Description:&lt;/strong&gt; Presentation slides, Workshop Video, and Workshop Communication&lt;br /&gt; &lt;br /&gt;Eugene Barksy: Tri-Agency Research Data Management Policy presentation and accompanying PowerPoint slides.&lt;br /&gt; &lt;br /&gt;Brittney Schichter: Ethics and Practical Considerations of Open Data Sharing presentation and accompanying Powerpoint slides.&lt;br /&gt; &lt;br /&gt;This workshop was developed as part of Dr. Ansermino's Data Champions Pilot Project supported by the &lt;a href = "https://alliancecan.ca/en"&gt;Digital Research Alliance of Canada&lt;/a&gt;.&lt;br /&gt;
DOI: 10.14288/1.0424333
title: Data from: Dispersal and establishment traits provide a colonization advantage for a polyploid apomictic plant

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;&lt;span lang="EN-US"&gt;&lt;strong&gt;Premise&lt;/strong&gt;: Apomictic plants (reproducing asexually through seed) often have larger ranges and occur at higher latitudes than closely related sexuals, a pattern known as geographical parthenogenesis (GP). Explanations for GP include differences in colonizing ability due to reproductive assurance and direct/indirect effects of polyploidy (most apomicts are polyploid) on ecological tolerances. While life history traits associated with dispersal and establishment also contribute to the potential for range expansion, few studies compare these traits in related apomicts and sexuals. &lt;/span&gt;&lt;/p&gt; &lt;p&gt;&lt;span lang="EN-US"&gt;&lt;strong&gt;Methods&lt;/strong&gt;: We investigated differences in early life history traits between diploid-sexual and polyploid-apomictic &lt;em&gt;Townsendia hookeri &lt;/em&gt;(Asteraceae), which displays a classic pattern of GP. Using lab and greenhouse experiments, we measured seed dispersal traits, germination success, and seedling size and survival in sexual and apomictic populations from across the range. &lt;/span&gt;&lt;/p&gt; &lt;p&gt;&lt;span lang="EN-US"&gt;&lt;strong&gt;Key Results&lt;/strong&gt;: While theory predicts that trade-offs between dispersal and establishment traits should be common, this was largely not the case in &lt;em&gt;T. hookeri&lt;/em&gt;. Apomictic seeds had both lower terminal velocity (staying aloft longer when dropped) and higher germination success than sexual seeds. While there were no differences in seedling size between reproductive types, apomicts did, however, have slightly lower seedling survival than sexuals. &lt;/span&gt;&lt;/p&gt; &lt;p&gt;&lt;span lang="EN-US"&gt;&lt;strong&gt;Conclusions&lt;/strong&gt;: These differences in early life history traits, combined with reproductive assurance conferred by apomixis, suggest that apomicts achieve a greater range through advantages in their ability to both spread and establish. &lt;/span&gt;&lt;/p&gt;
DOI: 10.14288/1.0424332
title: Trait-dependent diversification in angiosperms: Patterns, models and data

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Variation in species richness across the tree of life, accompanied by the incredible variety of ecological and morphological characteristics found in nature, has inspired many studies to link traits with species diversification. Angiosperms are a highly diverse group that has fundamentally shaped life on earth since the Cretaceous and illustrate how species diversification affects ecosystem functioning. Numerous traits and processes have been linked to differences in species richness within this group, but we know little about their relative importance and how they interact. Here, we synthesized data from 152 studies that used state-dependent speciation and extinction (SSE) models on angiosperm clades. Intrinsic traits related to reproduction and morphology were often linked to diversification but a set of universal drivers did not emerge as traits did not have consistent effects across clades. Importantly, SSE model results were correlated to dataset properties – trees that were larger, older, or less well-sampled tended to yield trait-dependent outcomes. We compared these properties to recommendations for SSE model use and provide a set of best practices to follow when designing studies and reporting results. Finally, we argue that SSE model inferences should be considered in a larger context incorporating species' ecology, demography and genetics.&lt;/p&gt;
DOI: 10.14288/1.0424556
title: Health Worker Training Materials ~ Smart Discharges

description: &lt;strong&gt;Objective(s):&lt;/strong&gt; The Smart Discharges Health Worker Training Program uses a train-the-trainer model to improve the quality of discharge care. Core learning components include: 1) understanding why children die during the vulnerable period after discharge; 2) conducting risk assessment for post-discharge vulnerability (facility-based health workers only); and 3) Effective counselling practices. &lt;br /&gt;&lt;strong&gt;Data Description:&lt;/strong&gt; This dataset includes the following materials for use in the Smart Discharges Training Program: 1) Facilitators Guide; 2) Health Workers Guide; 3) Community Health Worker’s Trainer’s Manual; 4) Smart Discharges Training Pre-Post Test; 5) Smart Discharges Training Program Evaluation Form. Materials were originally developed by WALIMU, in partnership with the University of British Columbia, and were adapted by the Uganda Ministry of Health. &lt;br /&gt;All materials are provided in the English language. &lt;br /&gt;&lt;strong&gt;Limitations:&lt;/strong&gt; These materials were designed for the Ugandan context and may not be generalizable to other settings. &lt;br /&gt;&lt;strong&gt;Abbreviations:&lt;/strong&gt; Village Health Teams (VHT) (i.e. local term for Community Health Worker (CHW)) &lt;br /&gt;&lt;strong&gt;Ethics Declaration:&lt;/strong&gt; NA &lt;br /&gt;&lt;strong&gt;Funding Source(s):&lt;/strong&gt; BC Children's Hospital Foundation; Grand Challenges Canada; Mining4Life; Thrasher Research Fund;