cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3610697_d3
title: MOESM5 of HDAC inhibitors cause site-specific chromatin remodeling at PU.1-bound enhancers in K562 cells

description: Additional file 5: Table S3. RNA-seq expression data for ETS family transcription factors detected in K562 cells.
DOI: 10.6084/m9.figshare.c.3610742_d2
title: Additional file 3: Table S3. of Exposure to various abscission-promoting treatments suggests substantial ERF subfamily transcription factors involvement in the regulation of cassava leaf abscission

description: SOTA clustering and annotation of AP2/ERF genes expressed in response to water-deficit stress treatment. (XLS 62 kb)
DOI: 10.6084/m9.figshare.c.3610736_d4
title: Additional file 2: of Weevil endosymbiont dynamics is associated with a clamping of immunity

description: Characteristics of sequences used in RT-qPCR experiments. (XLS 38 kb)
DOI: 10.6084/m9.figshare.c.3610742_d3
title: Additional file 4: Table S4. of Exposure to various abscission-promoting treatments suggests substantial ERF subfamily transcription factors involvement in the regulation of cassava leaf abscission

description: SOTA clustering and annotation of AP2/ERF genes expressed in response to ethylene treatment. (XLS 67 kb)
DOI: 10.6084/m9.figshare.c.3610742_d4
title: Additional file 5: Table S5. of Exposure to various abscission-promoting treatments suggests substantial ERF subfamily transcription factors involvement in the regulation of cassava leaf abscission

description: AP2/ERF genes that exhibited the same expression patterns during ethylene and water-deficit stress treatments. (XLS 19 kb)
DOI: 10.6084/m9.figshare.c.3610754_d1
title: Additional file 3: of The C-terminal domain of TPX2 is made of alpha-helical tandem repeats

description: Multiple sequence alignment used in Fig.Â 1a. (TXT 43Â kb)
DOI: 10.6084/m9.figshare.c.3610754_d2
title: Additional file 5: of The C-terminal domain of TPX2 is made of alpha-helical tandem repeats

description: Multiple sequence alignment used in Fig.Â 2. (TXT 2Â kb)
DOI: 10.6084/m9.figshare.c.3610754_d3
title: Additional file 1: of The C-terminal domain of TPX2 is made of alpha-helical tandem repeats

description: FASTA file of sequences used for Fig.Â 1a. (TXT 21Â kb)
DOI: 10.6084/m9.figshare.c.3610742_d7
title: Additional file 1: Table S1. of Exposure to various abscission-promoting treatments suggests substantial ERF subfamily transcription factors involvement in the regulation of cassava leaf abscission

description: Amino acid sequences of 196 cassava AP2/ERF proteins. (XLS 193 kb)
DOI: 10.6084/m9.figshare.c.3610754_d4
title: Additional file 2: of The C-terminal domain of TPX2 is made of alpha-helical tandem repeats

description: FASTA file of sequences used for Fig.Â 1a. (TXT 5Â kb)
DOI: 10.6084/m9.figshare.c.3610754_d5
title: Additional file 4: of The C-terminal domain of TPX2 is made of alpha-helical tandem repeats

description: Multiple sequence alignment used in Fig.Â 1b. (TXT 10Â kb)
DOI: 10.6084/m9.figshare.c.3610778_d6
title: Additional file 2: Table S2. of Fish connectivity mapping: linking chemical stressors by their mechanisms of action-driven transcriptomic profiles

description: A complete list of query signatures constructed in the current study. Signatures were named after fish sample treatment conditions by the order of chemical, dose, gender, tissue, and exposure duration. Some conditions may each have multiple signatures generated because of either repeated experiments or different parameters in analysis. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3610778_d7
title: Additional file 1: Table S1. of Fish connectivity mapping: linking chemical stressors by their mechanisms of action-driven transcriptomic profiles

description: A complete list of microarray data used in the current study. (XLSX 111Â kb)
DOI: 10.6084/m9.figshare.c.3610817_d1
title: Additional file 2: of Parent-of-origin effects on genome-wide DNA methylation in the Cape honey bee (Apis mellifera capensis) may be confounded by allele-specific methylation

description: Genes with hypermethylated sites (25Â % &gt; methylation difference) in Fertilized embryos. Genes with hypermethylated sites (25Â % &gt; methylation difference) in Thelytokous embryos. Genes with a combination of hypermethylated sites (25Â % &gt; methylation difference) from both Fertilized and Thelytokous embryos. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.c.3610838_d1
title: MOESM1 of Tracing the scientific outputs in the field of Ebola research based on publications in the Web of Science

description: Additional file 1. Highly cited papers on Ebola in Web of Science during 1977â  2014.
DOI: 10.6084/m9.figshare.c.3610826_d3
title: Additional file 1: of High evolutionary turnover of satellite families in Caenorhabditis

description: Files containing the description of all satellites and their families in several formats (31 files). (ZIP 1068 kb)
DOI: 10.6084/m9.figshare.28000112
title: 10,000 RR Interval Data (9500NAF & 500PAF) from 24 h Holter recordings used for atrial fibrillation detection

description: This RR interval dataset is derived from 10,000 cases of 24-hour Holter monitoring data sampled at 128 Hz. Among the cases, 9,500 are labeled as non-atrial fibrillation (NAF), and 500 as paroxysmal atrial fibrillation (PAF). These data have been used in the article "Clinician-AI Collaboration: A Win-Win solution for Efficiency and Reliability in Atrial Fibrillation Diagnosis".The dataset formated as CSV file consists of two columns:<b>rr_interval</b>: Represents the interval between consecutive R-peaks, measured in milliseconds.<b>label</b>: Categorical labels for the beats, where:<code>1</code> indicates AF<code>0</code> indicates NAF<code>-1</code> indicates noise or artifactsEach case is named based on its category. NAF cases are labeled as <code>NAF0001.csv</code> through <code>NAF9500.csv</code>, while PAF cases are labeled as <code>PAF0001.csv</code> through <code>PAF0500.csv</code>.For any questions, please contact the email: hustzp@hust.edu.cn
DOI: 10.6084/m9.figshare.28000112.v1
title: RR Interval Data (9500NAF & 500PAF)

description: This RR interval dataset is derived from 10,000 cases of 24-hour Holter monitoring data sampled at 128 Hz. Among the cases, 9,500 are labeled as non-atrial fibrillation (NAF), and 500 as paroxysmal atrial fibrillation (PAF).The dataset formated as CSV file consists of two columns:<b>rr_interval</b>: Represents the interval between consecutive R-peaks, measured in milliseconds.<b>label</b>: Categorical labels for the beats, where:<code>1</code> indicates AF<code>0</code> indicates NAF<code>-1</code> indicates noise or artifactsEach case is named based on its category. NAF cases are labeled as <code>NAF0001.csv</code> through <code>NAF9500.csv</code>, while PAF cases are labeled as <code>PAF0001.csv</code> through <code>PAF0500.csv</code>.
DOI: 10.6084/m9.figshare.c.3610886_d1
title: Additional file 1: of Sexual dimorphism in myocardial acylcarnitine and triglyceride metabolism

description: Table S1. Summary statistics, ANOVA and principal component analysis results for genes. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.c.3610889_d2
title: MOESM3 of Chemical disguise of myrmecophilous cockroaches and its implications for understanding nestmate recognition mechanisms in leaf-cutting ants

description: Additional file 3. The raw chemical data (total ion count) per sample for Atta colonies. Peaks are numbered according to Table 1 and additional file 1; sample names include information about colony identity (first word) and whether the sample is a cockroach (“roach”) or a worker (“mw”).
DOI: 10.6084/m9.figshare.c.3610886_d2
title: Additional file 5: of Sexual dimorphism in myocardial acylcarnitine and triglyceride metabolism

description: Table S2. Summary statistics and ANOVA and principal component analysis results for metabolites. (XLSX 43Â kb)
DOI: 10.6084/m9.figshare.c.3610877_d6
title: Additional file 2: of RNA-Sequencing for profiling goat milk transcriptome in colostrum and mature milk

description: Enriched Gene Ontology term analysis in D1 and D2 lactation samples. (XLSX 68 kb)
DOI: 10.6084/m9.figshare.c.3610889_d3
title: MOESM4 of Chemical disguise of myrmecophilous cockroaches and its implications for understanding nestmate recognition mechanisms in leaf-cutting ants

description: Additional file 4. The data collected in the behavioural experiment. Included are raw numbers of the occurrences of different behaviours (ignorance, investigation, grooming, threat, biting) per replicate and information on whether (1) or not (0) a cockroach died within 48Â h in the aggression arena.
DOI: 10.6084/m9.figshare.c.3610889_d4
title: MOESM2 of Chemical disguise of myrmecophilous cockroaches and its implications for understanding nestmate recognition mechanisms in leaf-cutting ants

description: Additional file 2. The raw chemical data (total ion count) per sample for Acromyrmex colonies. Peaks are numbered according to Table 1 and additional file 1; sample names include information about colony number and whether the sample is a cockroach (“roach”) or a worker (“mw”).
DOI: 10.15468/dl.vey3wy
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tantilla tayrae Wilson, 1983"
 ]
}

 The dataset includes 20 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032735-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3610970_d1
title: Additional file 1: Table S1. of Genome-wide miR-155 and miR-802 target gene identification in the hippocampus of Ts65Dn Down syndrome mouse model by miRNA sponges

description: Gene ontology analysis of predicted transcripts. (XLSX 104 kb)
DOI: 10.6084/m9.figshare.c.3611009_d1
title: Additional file 3 of Time course of the response to ACTH in pig: biological and transcriptomic study

description: Complete list of enriched GO (Biological process (BP), Molecular function (MF) and Cellular Component (CC) for each of the cluster identified with the hierarchical ascending clustering ‘.xls’ file. Features the GO items, the corresponding functions, the class of ontology, the number of genes in the input list (enriching a GO and total number) and in the reference list (enriching a GO and total number), the raw and the adjusted Fisher’s exact test P-value and the list of genes. (XLS 10 kb)
DOI: 10.6084/m9.figshare.c.3611009_d2
title: Additional file 1 of Time course of the response to ACTH in pig: biological and transcriptomic study

description: ∙ Gene name: Name of the gene ∙ Probe Name, Agilent GPL16524: Probe names used on the microarray Agilent GPL16524 ∙ L/G coefficient: L/G ratio coefficient estimate ∙ Adjusted pval (LG): adjusted P-value associated with the L/G ratio coefficient ∙ adj.pval: adjusted P-value of the test at the time measurement where the most significant duplicate of the gene is DE ∙ Time point: time measurement where the gene is DE ∙ Expression: whether the DEG is up or down-regulated ∙ Cluster: cluster in which the gene is classified by HAC ∙ Gene description: informations on the gene’s molecular function ∙ Location: chromosomal location of the gene. (XLS 23 kb)
DOI: 10.6084/m9.figshare.c.3611012_d3
title: Additional file 6: of Sex chromosome evolution in snakes inferred from divergence patterns of two gametologous genes and chromosome distribution of sex chromosome-linked repetitive sequences

description: Pairwise sequence similarities of CTNNB1 and WAC genes among nine tetrapods. This table shows pairwise sequence similarities of CTNNB1 and WAC genes among nine tetrapods. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3611024_d1
title: Additional file 2: of Muscle strength differences in healthy young adults with and without generalized joint hypermobility: a cross-sectional study

description: Additional data file number 2. (XLS 39 kb)
DOI: 10.6084/m9.figshare.c.3611012_d4
title: Additional file 4: of Sex chromosome evolution in snakes inferred from divergence patterns of two gametologous genes and chromosome distribution of sex chromosome-linked repetitive sequences

description: Models and parameters used for estimation of molecular phylogenetic trees. This table shows models and parameters used for estimation of molecular phylogenetic trees. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3611021_d1
title: Additional file 2: of Tailored message interventions versus typical messages for increasing participation in colorectal cancer screening among a non-adherent population: A randomized controlled trial

description: Original data. Data used for analysis. (XLSX 199Â kb)
DOI: 10.6084/m9.figshare.c.3611009_d4
title: Additional file 4 of Time course of the response to ACTH in pig: biological and transcriptomic study

description: Complete list of enriched GO (Biological process (BP), Molecular function (MF) and Cellular Component (CC) for 34 genes for which L/G ratio had a significant effect ‘.xls’ file. Features the GO items, the corresponding functions, the class of ontology, the number of genes in the input list (enriching a GO and total number) and in the reference list (enriching a GO and total number), the raw and the 679 adjusted Fisher’s exact test P-value and the list of genes. (XLS 7 kb)
DOI: 10.6084/m9.figshare.c.3611048_d3
title: Additional file 2: of NeuroRDF: semantic integration of highly curated data to prioritize biomarker candidates in Alzheimer's disease

description: The developed RDF models and the SPARQL queries used are made available at: http://www.scai.fraunhofer.de/en/business-research-areas/bioinformatics/downloads/neurordf.html . (ZIP 178 kb)
DOI: 10.6084/m9.figshare.c.3611054_d5
title: Additional file 4: of Characterization of B cells in healthy pregnant women from late pregnancy to post-partum: a prospective observational study

description: Correlation coefficients between counts (and percentages) of B cell subsets and gestational age at delivery. Corr. Coef., Spearman correlation coefficient. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3611054_d6
title: Additional file 5: of Characterization of B cells in healthy pregnant women from late pregnancy to post-partum: a prospective observational study

description: Correlation coefficients between counts (and percentages) of B cell subsets and length of time post-partum until the collection of the final blood samples. Corr. Coef., Spearman correlation coefficient. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3611087_d1
title: Additional file 15: Table S12. of Overlapping cell population expression profiling and regulatory inference in C. elegans

description: Anatomy terms enriched in clustered genes. (XLSX 34Â kb)
DOI: 10.6084/m9.figshare.c.3611090_d2
title: MOESM1 of Deletion of homologs of the SREBP pathway results in hyper-production of cellulases in Neurospora crassa and Trichoderma reesei

description: Additional file 1: Table S1. Single-gene deletion strains available from the Fungal Genetics Stock Center that were included in screen.
DOI: 10.6084/m9.figshare.c.3611126_d1
title: Additional file 12: Table S8. of Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

description: Mapping locations of FANTOM5 mouse promoters to the pig genome (BED). Table (BED6 format) contains the following columns (left to right): chromosome, start, end, FANTOM5 mouse promoter ID, colour code and strand. The first three and sixth columns refer to the mapped locations of FANTOM5 mouse promoters (as identified by their ID in column 4) onto the pig genome. (TSV 3015 kb)
DOI: 10.6084/m9.figshare.c.3611087_d10
title: Additional file 1: Table S1. of Overlapping cell population expression profiling and regulatory inference in C. elegans

description: Strains and genotypes of embryos used. (XLSX 6Â kb)
DOI: 10.6084/m9.figshare.c.3611126_d2
title: Additional file 11: Table S7. of Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

description: Mapping locations of FANTOM5 human promoters to the pig genome (BED). Table (BED6 format) contains the following columns (left to right): chromosome, start, end, FANTOM5 human promoter ID, colour code and strand. The first three and sixth columns refer to the mapped locations of FANTOM5 human promoters (as identified by their ID in column 4) onto the pig genome. (TSV 6432 kb)
DOI: 10.6084/m9.figshare.c.3611087_d11
title: Additional file 17: Table S14. of Overlapping cell population expression profiling and regulatory inference in C. elegans

description: Gene ontology terms in clustered genes. (XLSX 102Â kb)
DOI: 10.6084/m9.figshare.c.3611126_d3
title: Additional file 9: Table S5. of Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

description: Assembled transcripts mapping statistics to the NCBI nucleotide database based on the originally unmapped (to Sscrofa10.2) RNA-Seq fragments. RNA-Seq unmapped fragments from four macrophage libraries were pooled, assembled as transcripts using SOAPdenovo-Trans-31kmer and aligned to the NCBI nucleotide database (NT). Statistics show the number of transcripts assembled, mapped to NT, and expressed at FPKM&gt;0 or FPKM&gt;10 with pig or human annotation present in at least one hit of the top five hits to NT. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3611087_d12
title: Additional file 5: Table S4. of Overlapping cell population expression profiling and regulatory inference in C. elegans

description: Reads per million for each gene. (XLSX 6277Â kb)
DOI: 10.6084/m9.figshare.c.3611087_d13
title: Additional file 16: Table S13. of Overlapping cell population expression profiling and regulatory inference in C. elegans

description: Expression annotation in clustered genes. (XLSX 105Â kb)
DOI: 10.6084/m9.figshare.c.3611126_d6
title: Additional file 6: Table S4. of Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

description: Description of the FANTOM5 monocyte and macrophage libraries. Table contains a summary description for each of the 55 FANTOM5 monocyte and macrophage librariesÂ - as provided by the FANTOM5 consortium. (CSV 5 kb)
DOI: 10.6084/m9.figshare.c.3611126_d7
title: Additional file 4: Table S3. of Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

description: Table S3A: Locations of FANTOM5 mouse promoters mapped to the pig genome. Table contains the following columns (left to right): FANTOM5 mouse promoter ID, Ensembl gene ID associated with the FANTOM5 mouse promoter, mapping locations to the pig genome (Sscrofa10.2), the nearest pig Ensembl ID to the mapped promoter (strand-specific) and the number of pig CAGE CTSS and/or RNA-Seq signal (assembled transcripts from pooled macrophage libraries) located within a 20 Kb window from the 3â  -end of the mapped promoter. Table S3B: Locations of FANTOM5 mouse promoters mapped to the human genome. Table contains the following columns (left to right): FANTOM5 mouse promoter ID, Ensembl gene ID associated with the FANTOM5 mouse promoter, mapping locations to the human genome (hg19), the nearest human Ensembl ID to the mapped promoter (strand-specific). (ZIP 2981 kb)
DOI: 10.6084/m9.figshare.c.3611087_d15
title: Additional file 18: Table S15. of Overlapping cell population expression profiling and regulatory inference in C. elegans

description: Motifs enriched upstream of clustered genes. (XLSX 3423Â kb)
DOI: 10.6084/m9.figshare.c.3611126_d8
title: Additional file 5: Figure S2. of Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

description: Distribution of FANTOM5 human promotersâ   expression â   mappings proximal or distant from pig CAGE CTSS clusters. S2A: FANTOM5 human promoter mapped with proximal (&lt;=2 Kb) pig CAGE CTSS cluster. S2B: FANTOM5 human promoter mapped without a nearby pig CAGE CTSS cluster (&gt;2 Kb). The y-axis shows the FPKM expression values; the x-axis shows the number corresponding to each of the 55 FANTOM5 monocyte and macrophage libraries as described in the Additional file 6: Table S4. (ZIP 282 kb)
DOI: 10.6084/m9.figshare.c.3611126_d9
title: Additional file 14: Table S10. of Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

description: Mapping locations of the pig CAGE CTSS to the pig genome: multimapped subset (BED). Table contains the following columns (left to right): chromosome, start, end, pig CAGE CTSS ID (strand-specific), number of tags in the CTSS and strand. The first three and sixth columns refer to the mapped locations of the pig CAGE CTSS (as identified by the ID in column 4) onto the pig genome. The set of pig CAGE CTSS reported includes only the multimapped pig CAGE tags. (TSV 5734 kb)
DOI: 10.6084/m9.figshare.c.3611087_d16
title: Additional file 10: Table S8. of Overlapping cell population expression profiling and regulatory inference in C. elegans

description: Gene ontology terms enriched in FACS-sorted samples. (XLSX 93Â kb)
DOI: 10.6084/m9.figshare.c.3611165_d3
title: Additional file 2 of Modeling the oxygen uptake kinetics during exercise testing of patients with chronic obstructive pulmonary diseases using nonlinear mixed models

description: Sample R code. (R 388 kb)
DOI: 10.6084/m9.figshare.c.3611201_d5
title: Additional file 1: of Range-wide phenotypic and genetic differentiation in wild sunflower

description: Results of REML analysis of phenotype data. (XLSX 30Â kb)
DOI: 10.6084/m9.figshare.c.3611249_d1
title: Additional file 3: of Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans

description: Granulocyte de novo lncRNA loci annotation (1,561 loci): BED12 formatted file can be directly uploaded into UCSC browser. Column 5 indicates number of transcripts in the locus. (BED 119 kb)
DOI: 10.6084/m9.figshare.c.3611252_d1
title: Additional file 1 of Enabling network inference methods to handle missing data and outliers

description: TSR. The source code of trimmed scores regression (TSR) algorithm for missing data imputation is provided ready to be used in MATLAB. (M 2 kb)
DOI: 10.6084/m9.figshare.c.3611249_d2
title: Additional file 7: of Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans

description: A List of robust lncRNA transcripts in granulocytes (2,825 transcripts): columns are formatted as a BED12 file. B List of robust well expressed (RPKM &gt;1) lncRNA transcripts in granulocytes (931 transcripts): columns are formatted as a BED12 file. (XLSX 250 kb)
DOI: 10.6084/m9.figshare.c.3611252_d2
title: Additional file 2 of Enabling network inference methods to handle missing data and outliers

description: OUTLIERS. The source code of the outlier scheme for detection and correction is provided ready to be used in MATLAB. (M 3 kb)
DOI: 10.6084/m9.figshare.c.3611249_d3
title: Additional file 5: of Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans

description: Granulocyte de novo mRNA loci annotation (10,092 loci): BED12 formatted file can be directly uploaded into UCSC browser. Column 5 indicates number of transcripts in the locus. (BED 765 kb)
DOI: 10.6084/m9.figshare.c.3611249_d4
title: Additional file 8: of Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans

description: Annotation of granulocyte de novo lncRNA transcripts showing significantly variable expression (1,069 transcripts): BED12 formatted file can be directly uploaded into UCSC browser. (BED 117 kb)
DOI: 10.6084/m9.figshare.c.3611249_d6
title: Additional file 6: of Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans

description: Granulocyte de novo mRNA transcript annotation (132,864 transcripts): BED12 formatted file can be directly uploaded into UCSC browser. (BED 23458 kb)