cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28418435.v1
title: "Exploring Metaboloepigenetic Variability in Bovine Fibroblast Lines: A Foundation for Future Reprogramming Studies" Data

description: Data associated with "Exploring Metaboloepigenetic Variability in Bovine Fibroblast Lines: A Foundation for Future Reprogramming Studies".Data includes: Bioenergetic status, metabolite concentrations, DNA methylation, and histone modification concentrations obtained from bovine fibroblasts.
DOI: 10.6084/m9.figshare.28551299.v1
title: Datasets for Learning Assisted Hybrid Simulation Optimization Model

description: Disruptions and uncertainties can significantly reduce the efficiency of conventional intermodal transport, often leading to severe economic losses and deterioration in service levels. To mitigate the negative impacts of disruptions on the shipments, our research leverages the flexibility of synchromodality and develops a learning-based modular framework for disruption management. By utilizing a hybrid simulation-optimization modeling approach, the framework effectively captures disruptions and generates dynamic response strategies. Through the integration of Reinforcement Learning (RL), the proposed approach replans under disruptions, accounting for their stochastic characteristics and enabling swift, effective decision-making in real-time scenarios.Results are compared against a benchmark policy and an alternative reward mechanism, demonstrating that integrating RL into a synchromodal framework increases its resilience and results in lower costs compared to the benchmark policies across different disruption scenarios.
DOI: 10.6084/m9.figshare.29144390.v1
title: Anabela Relvas - Research.pdf

description: This research explores how ultraviolet (UV) radiation disrupts memory formation during adolescence by inducing DNA damage, using <i>Drosophila melanogaster</i> larvae as a model system. Focusing on the larval stage corresponding to adolescence, the study examined how UV exposure affected associative memory using an olfactory conditioning paradigm. Our results showed that UV-irradiated larvae exhibited significantly reduced performance in memory assays, indicating that DNA damage incurred during this critical period interferes with the neural processes necessary for memory encoding and retrieval. This suggests a potential mechanism by which environmental genotoxic stressors impair cognitive development in adolescents with implications for understanding how early-life exposures might affect learning and brain health in humans.
DOI: 10.6084/m9.figshare.4047549.v1
title: Supplementary Material for: Brain Arousal Regulation in Carriers of Bipolar Disorder Risk Alleles

description: <br><strong><em>Objectives:</em></strong> Recent genome-wide association studies identified a number of chromosomal risk loci for bipolar disorder (BD, ‘manic-depressive illness'). According to the vigilance regulation model, the regulation of brain arousal (referred to as ‘vigilance') when assessed via EEG is an emerging biomarker linked to the pathogenesis of manic and depressive episodes. On this basis, the present study aimed to assess whether carriers of BD risk alleles differ in brain arousal regulation. <b><i>Methods:</i></b> Healthy participants of the population-based Leipzig Health Care Study (LIFE) underwent a 20-min eyes-closed resting EEG paradigm. Brain arousal was assessed applying the computer-based Vigilance Algorithm Leipzig (VIGALL). The primary sample (n = 540) was genotyped for ten of the most reliable BD risk variants, of which two qualified for replication (n = 509). <b><i>Results:</i></b> Primary sample analyses revealed Bonferroni-adjusted significance for rs1006737 in CACNA1C (encoding a calcium channel subunit), with risk allele carriers exhibiting relatively steep brain arousal declines. Further, carriers of two risk alleles of rs472913 at 1p32.1 showed generally lower brain arousal levels for the duration of the resting paradigm. However, both associations failed replication. <b><i>Conclusion:</i></b> Although our initial findings are in line with the vigilance regulation model and convincing in view of the previously reported notable role of ion channelopathies in BD, our results do not provide consistent evidence for a link between BD risk variants and brain arousal regulation. Several between-sample differences may account for this inconsistency. The molecular genetics of brain arousal regulation remain to be clarified.
DOI: 10.6084/m9.figshare.6281093.v1
title: Pathways regulating decreased soil respiration with warming in a biocrust-dominated dryland

description: This dataset corresponds to a long-term warming study performed in a biocrust-dominated dryland ecosystem in southeastern Spain, where we assessed the different autotrophic and heterotrophic pathways determining the effects of warming on soil respiration, and the consequences for soil organic carbon accumulation.
DOI: 10.6084/m9.figshare.14746056.v1
title: De novo assembly and annotation of the mangrove cricket (Apteronemobius asahinai) genome

description: The mangrove cricket, <i>Apteronemobius asahinai</i>, is an endemic species of mangrove forest floors. This cricket shows a circatidal rhythm in its locomotor activity, with a period of approximately 12.6 h. Little is known about the molecular mechanisms underlying the circatidal rhythm. We presented the draft genome of the mangrove cricket to facilitate future molecular studies. We predicted 28,831 protein-coding genes. We annotated predicted genes via a BLASTP search against the UniProtKB/SwissProt Database and via a search of the Pfam database using InterProScan.<br>
DOI: 10.6084/m9.figshare.24033225.v1
title: Dataset of partial discharge and noise signals

description: Datasets (Tr0, Va0, Te0, Tr1, Va1, Te1, Te2) consisting of partial discharge (PD) and noise signals (NonPD) from electrical machines referred to in the publication "Deep learning and data augmentation for partial discharge detection in electrical machines" (DOI: https://doi.org/10.1016/j.engappai.2024.108074 )
DOI: 10.17632/sxgkpjdxsw
title: APPLES Study Sites

description: The 314 study sites in Europe and North America that enrolled patients in the APPLES study are listed here by country.
DOI: 10.6084/m9.figshare.25153358.v6
title: Raw data and code for IPN-NFID - Mahalanobis

description: Describe los archivos
DOI: 10.6084/m9.figshare.26410981.v1
title: MD&A+ Audit Opinion dataset for Bankruptcy Prediction

description: The ECL dataset includes the MD&A section and a binary label indicating whether the company filed for bankruptcy in the year following the report’s filing date. In our work, we expanded the ECL dataset with the Audit Opinion (AO) text. Specifically, we utilized an NLP tool (EDGAR-CORPUS) to extract the AO text where possible (usually found in item 8 of the financial report) and align it with the existing filings in the ECL. Our ECL + AO dataset consists of 50345 training samples, with a positive ratio of 0.84%, and 18275 test samples with a positive ratio of 0.67%.<br>The companies in our dataset span the period from 1995 to 2015 for the training set and from 2016 to 2021 for the test set.<br><br>
DOI: 10.6084/m9.figshare.28075346.v1
title: Hemodynamic Data

description: <i>Current Practices of Hemodynamic Monitoring in High-Risk Surgical Patients: A</i><i>Nationwide Survey Among Malaysian Anaesthesiologists</i><br><i>Advanced hemodynamic monitoring has been recommended for use in high-risk</i><i>surgeries and high-risk patients undergoing surgery. Several studies have demonstrated that</i><i>perioperative hemodynamic optimisation can improve postoperative outcomes in high-risk</i><i>surgical patients. This study aims to assess the current practices of hemodynamic monitoring</i><i>in high-risk surgical patients among Malaysian anaesthesiologists.</i>
DOI: 10.6084/m9.figshare.28309448.v1
title: datafile.csv

description: The data includes primary observations related to various parameters in the research. This primary data encompasses the sprouting percentage, shoot length, number of branches, number of leaves at 30,60 and 90 days after planting, number of roots, root length, root dry weight, and root fresh weight.
DOI: 10.6084/m9.figshare.24273055.v1
title: Raw data used to apply a multivariate analysis

description: Recovery of neglected species with cloud water micro condense capacity as a response to climate change: The case of sclerophyllous boxwoods of <i>Buxus balearica</i> Lam. in the southern Spanish Mediterranean
DOI: 10.6084/m9.figshare.25266697.v2
title: Results recorded for each well in 7x7 matrix experiments for all screens

description: Well by well analysis of matrix experiments including: library alone inhibitory response (raw and fitted), combination inhibitory reponse (raw only), combination expected effects (HSA and Bliss) and the excess values with respect to the expected.
DOI: 10.6084/m9.figshare.2059476.v1
title: Drosophila compensatory evolution - net and rhomboid

description: These are images (raw data) associated with our compensatory evolution project. Mutations (in the <i>net</i> and <i>rhomboid</i> genes respectively) were introduced and fixed into a large natural population of<i> Drosophila melanogaster</i> from the Fenn Valley Winery and vinyard (Fennville, MI, USA) via introgressions. Populations were then allowed to adapt either by natural selection (experimental evolution) or by artificially selecting for wild type like wing phenotypes to enable compensatory evolution. These specific images are from crosses among the replicates of the artificial selection lineages (and among the replicates for the net and rhomboid mutations), to assess aspects of the genetic architecture of the response to artificial selection.<br><br>Please note that this description is incomplete. It will be completed once all images are uploaded.
DOI: 10.6084/m9.figshare.21378213.v6
title: Quality assessment checklist for publications to be considered for review - Adapted from JBI and CASP

description: According to Whittemore & Knafl, two quality criterion instruments should be utilized during the review process to assure the authenticity, methodological quality, and informative value of the included research. The CASP tool and the JBI Critical Appraisal Tool each include a set of detailed questions to enhance the visualization of the data. A common checklist is adapted to simplify this complex comparison between the CASP tool and the JBI Critical Appraisal Tool. Each article can be assessed using the adapted checklist to analyze the articles clearly and succinctly. They were adjusted to include the essential criteria stated in both the CASP tool and the JBI Critical Appraisal Tool. The modified checklist includes a clear aim, methodology, design, recruitment, data collection, researcher-participant relations, participants and their voices, ethical considerations, data analysis and rigor, findings, and research value.
DOI: 10.6084/m9.figshare.25389205.v1
title: Datasets and R scripts for: Chimpanzees utilize video as reference in a spatiotemporally distant search for hidden food

description: The six files accompany the paper "Chimpanzees utilize video as reference in a spatiotemporally distant search for hidden food". The files contain the datasets and R scripts for each of the three experiments in the paper.
DOI: 10.6084/m9.figshare.27118077.v1
title: A grid high spatial resolution dataset for takeaway packaging waste in China

description: TPWgrid-China is a high-resolution gridded dataset for annual packaging waste generation of online food delivery industry in China at a grid resolution of 1 km × 1 km. Seven takeaway packaging categories and their use probabilities were considered in the takeaway packaging waste generation estimation. This dataset could promote effective management of TPW, and support strategies to reduce municipal solid waste in accordance with the “Zero-waste City” program.
DOI: 10.17632/bcwm4wjzj9
title: Molecular Dynamics Simulations of 2D-layered Graphene Sheets with Tandem Repeat Proteins

description: Example simulation and output files of a 2D-layered composite with Graphene Oxide and Tandem Repeat Proteins. These files can be used as a template to run different combinations of 2D materials and proteins, as long as they are defined in OPLS-AA forcefield.
DOI: 10.17632/g63f2s89wz
title: Underuse of sentinel lymph node biopsy for early-stage melanoma

description: Supplemental Tables - revision 1
DOI: 10.17632/gstjmrxf6z
title: Ankit_etal_2024a_data

description: The following data is available here.

(1) Vertical drifts over Tirunelveli
(2) Vertical total electron content (VTEC) over Ahmedabad
(3) OI 630.0 nm airglow intensity over Mt. Abu
(4) Vertical drift over Jicamarca
(5) EEJ over Jicamarca
(6) Electron and proton flux measurements from several LANL satellites
(7) Data used in Supporting Information (SI): Magnetic disturbances due to disturbance dynamo (D_{dyn})
DOI: 10.4121/22117145.v1
title: 26 GHz OFDM and 77 GHz FMCW Radar Dataset for Domain Shift Invariant Blockage Prediction

description: This dataset is the radar and groundtruth dataset linked to the paper "26 GHz OFDM and 77 GHz FMCW Radar Dataset for Domain Shift Invariant Blockage Prediction". The abstract of this paper is blow. The infor of the other part of the communication OFDM dataset in this paper can be found in the paper that is openly accessible. <br> This paper presents a novel millimeter wave communication (comms) and radar sensing co-existing dataset. The measurement campaign was performed for blockage prediction with diverse human activities. 26 GHz Orthogonal Frequency Division Multiplexing (OFDM) multi-beam communication testbed and 77 GHz Frequency-Modulated Continuous-Wave (FMCW) multiple input, multiple output (MIMO) radar multi-monostatic set-up were configured. The corresponding bistatic channel state information and multi-monostatic backscattered channels are pre-processed for preliminary domain shift analysis by means of visual pre-processed sample inspection. Domain shift inside a blockage prediction model occurs when measurement circumstances under which model training data was collected significantly differ from the model inference measurement circumstances. Domain shifts cause model performance deterioration in the inference phase. No previous millimeter wave blockage prediction research considers mitigating domain shift in prediction models. We argue that this is caused by no millimeter wave blockage prediction datasets being available with samples collected under a large number of different measurement circumstances. Analysis results indicate presence of different signature presence levels in pre-processed radar backscattered channel samples and different doppler bin energy magnitudes and locations in pre-processed OFDM testbed channel state information samples captured under varying measurement circumstances. Therefore, creating a large enough blockage prediction dataset with samples captured under varying measurement circumstances that induce hard enough domain shifts between model train and inference situations is important to allow model domain shift mitigation research.
DOI: 10.6084/m9.figshare.28248851.v1
title: Federated Adaptive Causal Estimation (FACE) of Target Treatment Effects

description: Federated learning of causal estimands may greatly improve estimation efficiency by leveraging data from multiple study sites, but robustness to heterogeneity and model misspecifications is vital for ensuring validity. We develop a Federated Adaptive Causal Estimation (FACE) framework to incorporate heterogeneous data from multiple sites to provide treatment effect estimation and inference for a flexibly specified target population of interest. FACE accounts for site-level heterogeneity in the distribution of covariates through density ratio weighting. To safely incorporate source sites and avoid negative transfer, we introduce an adaptive weighting procedure via a penalized regression, which achieves both consistency and optimal efficiency. Our strategy is communication-efficient and privacy-preserving, allowing participating sites to share summary statistics only once with other sites. We conduct both theoretical and numerical evaluations of FACE and apply it to conduct a comparative effectiveness study of BNT162b2 (Pfizer) and mRNA-1273 (Moderna) vaccines on COVID-19 outcomes in U.S. veterans using electronic health records from five VA regional sites. We show that compared to traditional methods, FACE meaningfully increases the precision of treatment effect estimates, with reductions in standard errors ranging from 26% to 67%.
DOI: 10.6084/m9.figshare.29035814.v1
title: Accession list

description: Accession list for genome analysis
DOI: 10.6084/m9.figshare.3085210.v7
title: missing_data_raw.zip

description: This archive contains data needed to reconstruct the missing data in Eurostat 1-year population structures and deaths data at NUTS-2 regions level for the period 2003-2013.<br><br>Germany (DE): DED4, DED5, 2003-2010, pop & deaths<br>Denmark (DK): DE01, DE02, DE03, DE 03, DE05, pop & deaths<br>Slovenia (SI): SI01,SI02, 2003-2004, pop
DOI: 10.6084/m9.figshare.9975710.v1
title: codes and data

description: The GeoLife data were derived from the following resources available in the public domain: [https://www.microsoft.com/en-us/download/details.aspx?id=52367].These codes were mainly used to compute the value of FD of trajectories and further detect the walking pattern of pedestrians. In addtion, readers can acqurie the code of pedestrian network generation based on KDE-based method from the referenced article (website: http://mapconstruction.org/). <br>
DOI: 10.17632/xj4rs77c4j
title: OilPalm_Dataset.id

description: All images are from the Palangka Raya oil palm plantation area, Kalimantan Tengah, Indonesia. Data was collected in August 2022. It can be seen 
in the Table, the data is separated into several small sizes, categories, types, and amounts of data.
If you use this data, please cite our journal, available at SSRN: https://ssrn.com/abstract=4596338 or http://dx.doi.org/10.2139/ssrn.4596338
DOI: 10.6084/m9.figshare.1250116.v1
title: Independent verification of Donnellan et al.'s (2014, Emotion) Study 1 results.

description: Independent verification of Donnellan et al.'s (2014, Emotion) Study 1 results.
DOI: 10.6084/m9.figshare.19337912.v1
title: Osa Peninsula LULC Maps 1987, 1998, 2019

description: Land use / land cover maps of the Osa Conservation Area, Costa Rica for the years 1987, 1998 and 2019. Thank you to NASA DEVELOP Osa Water Resources Teams I, II and III, and Osa Conservation for their assistance and support. Publication in prep, including LULC change and landscape metrics analysis.<br>These maps were generated using annual composite Landsat imagery.<br>"Mature Forest" is defined as forests greater than 35 years of age.
DOI: 10.6084/m9.figshare.28104275.v1
title: Supplementary Material for: Pulmonary Tuberculosis and Risk of Lung Cancer: A Systematic Review and Meta-Analysis

description: Introduction: Lung cancer is a leading cause of cancer-related deaths worldwide, with rising incidence in resource-limited settings. Research suggests an increased risk of lung cancer in individuals with a history of pulmonary tuberculosis (TB), but the association needs further clarification. This systematic review aims to provide a more comprehensive understanding of this relationship.
Methods: We systematically searched the PubMed/Medline, EMBASE, and Scopus databases for relevant studies up to March 15, 2024. The quality of the included studies was assessed using the Joanna Briggs Institute (JBI) critical appraisal checklist. Pooled odds ratios (ORs) with 95% confidence intervals (CIs) were calculated using either random-effects or fixed-effects models, depending on the level of heterogeneity. All statistical analyses were performed using Comprehensive Meta-Analysis software, version 3.0.
Results: A total of 37 studies were included (9 cohort and 28 case-control). A significant association between prior pulmonary TB and lung cancer was found in both cohort (OR: 2.3; 95% CI, 1.4-3.8) and case-control (OR: 1.9; 95% CI, 1.4-2.5) studies. Subgroup analyses revealed a stronger association in East Asia (OR: 2.4; 95% CI, 1.3-4.1). 
Conclusion: Our study provides strong evidence of an increased risk of lung cancer following pulmonary TB. The findings emphasize the need for comprehensive public health strategies, including targeted screening, early detection, and smoking cessation. Future studies should investigate the mechanisms linking TB and lung cancer, as well as the effectiveness of integrated prevention programs, particularly in high-burden regions.
DOI: 10.17632/6363542kdw
title: Data for: A dataset of 112 ligands for the preconcentration of mercury, uranium, lanthanum and other pollutants and heavy metals in water

description: The energy dispersive X-ray fluorescence (EDXRF) spectra for mercury (Hg) preconcentration in water along with the EDXRF spectra for 112 ligands, immobilized on anion-selective membranes, screened for calcium (Ca), iron (Fe), nickel (Ni), zinc (Zn), strontium (Sr), lanthanum (La), uranium (U), copper (Cu), and gold (Au) preconcentration in tap water.
DOI: 10.6084/m9.figshare.13557824.v1
title: condensed_species_GTDB v1.2.0

description: The condensed_species.csv dataset is the second data product from the data merger workflow. The trait data are mapped and aggregated to GTDB species level.
DOI: 10.6084/m9.figshare.28877324.v2
title: <b>Verification of A+M[S] Model: CKM-Activated Scalar Recursion and Baryonic Harmonic Locking</b>

description: We present initial verification of the A+M[S] framework—a scalar-field-based cosmological model defining structure emergence through recursive echo formation and harmonic memory retention.<br>Using scalar resonance simulations and PETI/KMPS invariants, we validate the formation of persistent topological knots (CKMs) aligning with known baryonic harmonic bands. Hydrogen_Candidate_001 and CKM-ACTIVATED-019 demonstrate convergence to the proton harmonic under recursive input. Additionally, the compression of H001 triggers activation of 19 new M-anchor nodes across expanding scalar echo shells, confirming field-propagated recursion and secondary structure seeding.<br>This dataset includes recursive simulation logs, harmonic scans, M-anchor activation records, and a visual map of shell evolution. These results support a novel mechanism of self-organizing baryonic precursor formation, embedded in the lattice structure of the A+M[S] model.<br>“Includes a comparative analysis of Collapse Knot Manifolds (CKMs) against known mathematical knots, highlighting dynamic echo behavior and scalar field response unique to the A+M[S] framework.”<br><br>
DOI: 10.6084/m9.figshare.14597340.v1
title: SciRep-10.1038/s41598-021-90540-9

description: Trinotate annotations for the bearded fireworm
DOI: 10.6084/m9.figshare.21408297.v2
title: CIED-Stack gas concentrations, 2015-2018

description: The Chinese Industrial Emissions Database (CIED) provides inventory of particulate matter (PM), SO2 and NOX from Chinese industries from 2015 to 2018, based on direct measurements from China’s continuous emission monitoring systems (CEMS) network. This document provides stack gas concentrations for China’s different industrial emission sources.