cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/2ey-r2c-vbs
title: Chondrichthyes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wlx-f14-s3l
title: †Cyathophyllia de Fromentel, 1865

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k0a-eba-x0a
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x7w-dap-3c7
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1kf-gt2-kp7
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/80f-znz-5g3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d8w-e1b-avp
title: Ovis aries Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rbc-ym1-9k4
title: †Palorbitolina lenticularis (Blumenbach, 1805)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a7q-ln3-t8t
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h5e-x0x-da3
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zwt-s0w-v5s
title: Isurus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9b7-8vc-qn0
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/prj-2k1-xl5
title: Rangifer tarandus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cgg-dsx-8hs
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rsz-j5t-91y
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.15772077
title: ONE-STEP tagging: a versatile method for rapid site-specific integration by simultaneous reagent delivery

description: FCS FILES NAR-20250731T144808Z-1-001.zip - contains raw FACS data (fcs format) grouped by figures    Data excel from all figure in paper for statistical analysis_T-TEST_ADDED.xlsx - contains analysis of raw FACS data used in figuresRepresentative_minicircle_ligations_traces_2025-02-11.7z - contains representative minicircle ligation traces from Tapestationmerged_FAY23219_pass.fastq.gz - contains gt-mng-actr10-sorted ONT data (from cells sorted on green fluorescence after tagging with GT mNeonGreen minicircle at ACTR10 locus)merged_FAZ56558_pass.fastq.gz - contains ga-mng-gt-actr10-sorted ONT data (from cells sorted on green fluorescence after tagging with GA mNeonGreen GT plasmid at ACTR10 locus)m84047_250501_103416_s3.hifi_reads.bc2033.bam - contains gt-mng-actr10-sorted PacBio data (from cells sorted on green fluorescence after tagging with GT mNeonGreen minicircle at ACTR10 locus)m84047_250501_103416_s3.hifi_reads.bc2034.bam - contains ga-mng-gt-actr10-sorted PacBio data (from cells sorted on green fluorescence after tagging with GA mNeonGreen GT plasmid at ACTR10 locus)read-classifier-v1.py - script that classifies reads based on alignment scores to different reference sequencesread-coverage-plotter-v1.py - script that plots read coverage per base    crispresso_analysis_v1.py - script that analyses and plots indel frequency from crispresso2 output dataMiseq_Tagging_Data.7z - contains Miseq data for attP integration analysisAlleles_frequency_tables.7z - contains crispresso2 output used for attP integration analysisFigure6_images.7z - contains images presented in figure 6EP29012024_Editing and HDR efficiency-20250801T124908Z-1-001.zip - ab1 files, ICE analysis and powerpoint with gel images of attP integrationBenchlingExport_-_2025-08-01.zip - export of benchling folder associated with manuscript (genbank, html and ab1 files)gel_02082024.7z - contains sgd files of gel images, image files and text file with run parameters and legend - figure S4, panel B
DOI: 10.5281/zenodo.15772076
title: ONE-STEP tagging: a versatile method for rapid site-specific integration by simultaneous reagent delivery

description: FCS FILES NAR-20250731T144808Z-1-001.zip - contains raw FACS data (fcs format) grouped by figures    Data excel from all figure in paper for statistical analysis_T-TEST_ADDED.xlsx - contains analysis of raw FACS data used in figuresRepresentative_minicircle_ligations_traces_2025-02-11.7z - contains representative minicircle ligation traces from Tapestationmerged_FAY23219_pass.fastq.gz - contains gt-mng-actr10-sorted ONT data (from cells sorted on green fluorescence after tagging with GT mNeonGreen minicircle at ACTR10 locus)merged_FAZ56558_pass.fastq.gz - contains ga-mng-gt-actr10-sorted ONT data (from cells sorted on green fluorescence after tagging with GA mNeonGreen GT plasmid at ACTR10 locus)m84047_250501_103416_s3.hifi_reads.bc2033.bam - contains gt-mng-actr10-sorted PacBio data (from cells sorted on green fluorescence after tagging with GT mNeonGreen minicircle at ACTR10 locus)m84047_250501_103416_s3.hifi_reads.bc2034.bam - contains ga-mng-gt-actr10-sorted PacBio data (from cells sorted on green fluorescence after tagging with GA mNeonGreen GT plasmid at ACTR10 locus)read-classifier-v1.py - script that classifies reads based on alignment scores to different reference sequencesread-coverage-plotter-v1.py - script that plots read coverage per base    crispresso_analysis_v1.py - script that analyses and plots indel frequency from crispresso2 output dataMiseq_Tagging_Data.7z - contains Miseq data for attP integration analysisAlleles_frequency_tables.7z - contains crispresso2 output used for attP integration analysisFigure6_images.7z - contains images presented in figure 6EP29012024_Editing and HDR efficiency-20250801T124908Z-1-001.zip - ab1 files, ICE analysis and powerpoint with gel images of attP integrationBenchlingExport_-_2025-08-01.zip - export of benchling folder associated with manuscript (genbank, html and ab1 files)gel_02082024.7z - contains sgd files of gel images, image files and text file with run parameters and legend - figure S4, panel B
DOI: 10.15468/dl.hubv8z
title: Occurrence Download

description: A dataset containing 1277 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chamaetylas poliophrys)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 1277 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087043-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z8cqgz
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Raiamas batesii)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 17 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087044-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh1672557.10fu
title: SH1672557.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1672590.10fu
title: SH1672590.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.ckvwju
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012414-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pkncgo
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058460-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.asnvgv
title: Occurrence Download

description: A dataset containing 6451598 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Ecuador"
 ]
}

 The dataset includes 6451598 records from 1606 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0332332-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ubwubs
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012417-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mtm9so
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081864-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.59gnwe
title: Occurrence Download

description: A dataset containing 457776 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence, Machine Observation)",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate rounded, Geodetic datum assumed WGS84, Coordinate reprojected, Country derived from coordinates, Type status invalid, Ambiguous institution, Ambiguous collection, Institution match none, Collection match none, Institution match fuzzy, Collection match fuzzy, Institution collection mismatch, Different owner institution, Coordinate uncertainty meters invalid, Presumed negated longitude, Elevation min max swapped, Occurrence status inferred from individual count, ccurrence status inferred from basis of record)",
 "OccurrenceStatus is Present",
 "StateProvince is one of (Colorado, Michigan, Wisconsin, Minnesota, Indiana, Illinois, Iowa, Kentucky, Missouri, Kansas, Nebraska, North Dakota, South Dakota, Ohio)",
 "TaxonKey is one of (Colletidae, Megachilidae, Andrenidae, Melittidae, Halictidae, Apidae)"
 ]
}

 The dataset includes 457776 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230038-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc7ftbs
title: CCDC 221815: Experimental Crystal Structure Determination

description: Related Article: F.E.Jacobsen, S.M.Cohen|2004|Inorg.Chem.|43|3038|doi:10.1021/ic035388o
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7ftct
title: CCDC 221816: Experimental Crystal Structure Determination

description: Related Article: F.E.Jacobsen, S.M.Cohen|2004|Inorg.Chem.|43|3038|doi:10.1021/ic035388o
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7ftdv
title: CCDC 221817: Experimental Crystal Structure Determination

description: Related Article: F.E.Jacobsen, S.M.Cohen|2004|Inorg.Chem.|43|3038|doi:10.1021/ic035388o
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7ftfw
title: CCDC 221818: Experimental Crystal Structure Determination

description: Related Article: F.E.Jacobsen, S.M.Cohen|2004|Inorg.Chem.|43|3038|doi:10.1021/ic035388o
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7ftgx
title: CCDC 221819: Experimental Crystal Structure Determination

description: Related Article: F.E.Jacobsen, S.M.Cohen|2004|Inorg.Chem.|43|3038|doi:10.1021/ic035388o
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7jfdk
title: CCDC 224328: Experimental Crystal Structure Determination

description: Related Article: C.Serre, N.Stock, T.Bein, G.Ferey|2004|Inorg.Chem.|43|3159|doi:10.1021/ic035363p
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc76m56
title: CCDC 214897: Experimental Crystal Structure Determination

description: Related Article: E.Schon, D.A.Plattner, P.Chen|2004|Inorg.Chem.|43|3164|doi:10.1021/ic030341o
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc76m67
title: CCDC 214898: Experimental Crystal Structure Determination

description: Related Article: E.Schon, D.A.Plattner, P.Chen|2004|Inorg.Chem.|43|3164|doi:10.1021/ic030341o
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc76m78
title: CCDC 214899: Experimental Crystal Structure Determination

description: Related Article: E.Schon, D.A.Plattner, P.Chen|2004|Inorg.Chem.|43|3164|doi:10.1021/ic030341o
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc76m89
title: CCDC 214900: Experimental Crystal Structure Determination

description: Related Article: E.Schon, D.A.Plattner, P.Chen|2004|Inorg.Chem.|43|3164|doi:10.1021/ic030341o
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc76mbc
title: CCDC 214902: Experimental Crystal Structure Determination

description: Related Article: E.Schon, D.A.Plattner, P.Chen|2004|Inorg.Chem.|43|3164|doi:10.1021/ic030341o
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc76m9b
title: CCDC 214901: Experimental Crystal Structure Determination

description: Related Article: E.Schon, D.A.Plattner, P.Chen|2004|Inorg.Chem.|43|3164|doi:10.1021/ic030341o
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7420f
title: CCDC 212443: Experimental Crystal Structure Determination

description: Related Article: Hui-Zhong Kou, Yun-Bo Jiang, Bei Chuan Zhou, Ru-Ji Wang|2004|Inorg.Chem.|43|3271|doi:10.1021/ic049857d
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc76mcd
title: CCDC 214903: Experimental Crystal Structure Determination

description: Related Article: E.Schon, D.A.Plattner, P.Chen|2004|Inorg.Chem.|43|3164|doi:10.1021/ic030341o
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7421g
title: CCDC 212444: Experimental Crystal Structure Determination

description: Related Article: Hui-Zhong Kou, Yun-Bo Jiang, Bei Chuan Zhou, Ru-Ji Wang|2004|Inorg.Chem.|43|3271|doi:10.1021/ic049857d
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc84hyt
title: CCDC 242666: Experimental Crystal Structure Determination

description: Related Article: E.Fournier, F.Lebrun, M.Drouin, A.Decken, P.D.Harvey|2004|Inorg.Chem.|43|3127|doi:10.1021/ic034806m
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc84j0x
title: CCDC 242668: Experimental Crystal Structure Determination

description: Related Article: E.Fournier, F.Lebrun, M.Drouin, A.Decken, P.D.Harvey|2004|Inorg.Chem.|43|3127|doi:10.1021/ic034806m
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.