cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/prrxskgdbc
title: H3K4me3 ChIP-seq of hsa-miR-96-5p Overexpressing Cells

description: H3K4me3 ChIP-seq of hsa-miR-96-5p Overexpressing IMR-90 Human Lung Fibroblasts. Compressed FASTQ archives of Control (C2 and C3) and miR-96-5p overexpressing IMR-90 cells (M2 and M3), forward (R1) and reverse (R2) strands. METHOD. Chromatin Immunoprecipitation and Analysis. Cell cultures for each condition were grown in T-175 flasks, treated as indicated, and processed according to instructions for ChIP-PCR workflows (SimpleChIP® Plus Enzymatic Chromatin IP Kit Agarose Beads #9004) and ChIP-seq workflows (SimpleChIP® Plus Enzymatic Chromatin IP Kit Magnetic Beads #9005). ChIP-PCR primers sequences (5’→3’) are: p16 prom 1 up-TCCTAGTTGTGAGAGCCCCA; p16 prom 1 dn-CCGCGCTCCTGAAAATCAAG; p16 prom 2 up-CAAATCCTCTGGAGGGACCG; p16 prom 2 dn-TGCCACATTCGCTAAGTGCT; p16 prom 3 up-TCGAAGCGCTACCTGATTCC; p16 prom 3 dn-ATCCAGGTGGGTAGAGGGTC; p21 prom 1 up-CTCCATCCCTATGCTGCCTG; p21 prom 1 dn-TTGGGACATGTTCCTGACGG; p21 prom 2 up-ATACGGGCTATGTGGGGAGT; p21 prom 2 dn-TGGTTGCAGCAGCTTTGTTG; p21 prom 3 up-CGTTCACAGGTGTTTCTGCG; p21 prom 3 dn-CACATCCCGACTCTCGTCAC; p21 prom 4 up-CTCTCCGAAAGCTACAGGGC; p21 prom 4 dn-TTTTCCTCACGAAGAGGGCG; p21 prom 5 up-CCGAGATCAACCCCTATGCC; p21 prom 5 dn-TTGGCCTTCCTGCCTTAGAC; IL1b prom 1 up-GAGGGTGTGGGTCTCTACCT; IL1b prom 1 dn-CCCCAGCCAAGAAAGGTCAA; IL1b prom 2 up-CATCCAGTGCATGGCAGTCA; 
IL1b prom 2 dn-CCTCTGCTCCAGCTCTCCTA; IL1b prom 3 up-GAGGCTAGGGGAGGCTATCA; IL1b prom 3 dn-GCTAGGTCAGTTGTGCAGGT; IL1b prom 4 up-TTTGGCTACTGTGGCACGAT; IL1b prom 4 dn-ATTTTACCGCCCAGCAGGAA;IL6 prom 1 up-AGGATTCCCAAGGGGTCACT; IL6 prom 1 dn-GTCTCCAGGTGGAGTGTGTG; IL6 prom 2 up-TAGATTTGAGGCCAACGGGG; IL6 prom 2 dn-GGAACTTCCTGACACCAGCA; IL6 prom 3 up-ACCAACTTGTCGCACTCACT; IL6 prom 3 dn-ACCCACTTTTTGTTGCTGCC. Immunoprecipitations were done with Tri-Methyl-Histone H3 (Lys27) (C36B11) Rabbit mAb #9733 (Cell Signaling) and Tri-Methyl-Histone H3 (Lys4) (C42D8) Rabbit mAb #9751 (Cell Signaling). For ChIP-PCR immunoprecipitations were done with ChIP-seq libraries were sequenced with ThruPLEX® DNA-Seq Kit (Takara Bio) and sequenced the pooled libraries on a NextSeq 2K P3 2x100-bp run, generating &gt; 1 billion reads. Output FASTQ files were processed with FastQC; Genome Analysis Toolkit (GATK; Broad Institute) was used clean FASTQ files which were then aligned to hg38 with (Burrows-Wheeler Aligner) BWA. The Galaxy Platform (Galaxy Community, 2022) was used for narrow and broad peak calling (MACS2) and differential peak calling (DiffBind).
DOI: 10.17632/wkrw8hx8vr
title: Mindful Water Consumption: Unveiling Its Essential Role in Disease Prevention and Longevity

description: Water is an essential component of human health, playing a critical role in disease prevention and promoting longevity. This article explores the biological importance of hydration, its impact on physical and mental health, and its relevance in aging and skin health. It examines the connection between inadequate hydration and common health conditions such as kidney stones, urinary tract infections, and chronic diseases like heart disease and diabetes. Additionally, the article discusses hydration's role in cognitive function and mental well-being. Practical recommendations for maintaining optimal hydration levels are provided, including personalized hydration plans, public health campaigns, and technological interventions. By emphasizing the significance of adequate water intake, this article advocates for a holistic approach to hydration that integrates physical health, mental well-being, and longevity.
DOI: 10.6084/m9.figshare.1318777.v1
title: Consent, collaboration and cures: the views of rare disease patients on systems for sharing data and biospecimens

description: Qualitative research among rare disease patients and advocates about their views on the international sharing of data and biospecimens for research.
DOI: 10.6084/m9.figshare.25562853.v1
title: BUSTED results

description: Raw result files from BUSTED.
DOI: 10.17632/9pgc4mm7vn
title: Netsim

description: Dataset used to explain and illustrate the use of the NetSim package
DOI: 10.17632/sb8yhb3ppw
title: Perceptions of civil engineering students about Building Information Modelling (BIM) 

description: The implementation of Building Information Modelling (BIM) is growing exponentially in the civil engineering sector and, at the same time, the higher education sector plays a central role in this regard. The dataset derives from an online questionnaire survey administrated to all the 28 civil engineering undergraduate students attending the academic course about BIM “Construction Management - BYG230” (“Byggadministrasjon med BIM - BYG230” in Norwegian) at University of Stavanger, Norway, between September 2022 and November 2022.  

The survey, created on the Norwegian platform “Nettskjema”, is divided into five parts and collects information regarding as many overarching aspects: socio-demographic data of the respondents, perceptions about BIM before and after course attendance, satisfaction about the academic course and the way it was conducted. All the information in this dataset is conveniently translated from Norwegian into English.
DOI: 10.6084/m9.figshare.12826841.v1
title: Supplementary Material for: Probability of Major Depression Classification Based on the SCID, CIDI, and MINI Diagnostic Interviews: A Synthesis of Three Individual Participant Data Meta-Analyses

description: <b><i>Introduction:</i></b> Three previous individual participant data meta-analyses (IPDMAs) reported that, compared to the Structured Clinical Interview for the DSM (SCID), alternative reference standards, primarily the Composite International Diagnostic Interview (CIDI) and the Mini International Neuropsychiatric Interview (MINI), tended to misclassify major depression status, when controlling for depression symptom severity. However, there was an important lack of precision in the results. <b><i>Objective:</i></b> To compare the odds of the major depression classification based on the SCID, CIDI, and MINI. <b><i>Methods:</i></b> We included and standardized data from 3 IPDMA databases. For each IPDMA, separately, we fitted binomial generalized linear mixed models to compare the adjusted odds ratios (aORs) of major depression classification, controlling for symptom severity and characteristics of participants, and the interaction between interview and symptom severity. Next, we synthesized results using a DerSimonian-Laird random-effects meta-analysis. <b><i>Results:</i></b> In total, 69,405 participants (7,574 [11%] with major depression) from 212 studies were included. Controlling for symptom severity and participant characteristics, the MINI (74 studies; 25,749 participants) classified major depression more often than the SCID (108 studies; 21,953 participants; aOR 1.46; 95% confidence interval [CI] 1.11–1.92]). Classification odds for the CIDI (30 studies; 21,703 participants) and the SCID did not differ overall (aOR 1.19; 95% CI 0.79–1.75); however, as screening scores increased, the aOR increased less for the CIDI than the SCID (interaction aOR 0.64; 95% CI 0.52–0.80). <b><i>Conclusions:</i></b> Compared to the SCID, the MINI classified major depression more often. The odds of the depression classification with the CIDI increased less as symptom levels increased. Interpretation of research that uses diagnostic interviews to classify depression should consider the interview characteristics.
DOI: 10.6084/m9.figshare.17705633.v1
title: Supplemental Materials of DER Parameters

description: Supplemental materials of DER parameters of the paper entitled "An Improved Two-Stage Deep Reinforcement Learning Approach for Regulation Service Disaggregation in a Virtual Power Plant"
DOI: 10.6084/m9.figshare.20088368.v1
title: Global IGBP LULC projection dataset under eight SSPs-RCPs

description: The global future land use/land cover (LULC) dataset was produced with Future Land Use Simulation (FLUS) model based on MODIS land cover product and LUH2 dataset under eight SSPs-RCPs (i.e., SSP1-RCP1.9, SSP1-RCP2.6, SSP4-RCP3.4, SSP5-RCP3.4, SSP2-RCP4.5, SSP4-RCP6.0, SSP3-RCP7.0, SSP5-RCP8.5). The dataset spans from 2015 to 2100 with every five years step. The classification scheme is IGBP, and the spatial resolution is 0.008333° (about 1km near equator) in geographic coordinate system (WGS84). The format of the dataset is GeoTIFF. <br> Cite information: Hou, H., Zhou, B. B., Pei, F., Hu, G., Su, Z., Zeng, Y., ... & Li, X. (2022). Future land use/land cover change has non‐trivial and potentially dominant impact on global gross primary productivity. <em>Earth's Future</em>, e2021EF002628.
DOI: 10.6084/m9.figshare.25038410.v2
title: Mangosteen Network Analysis Files

description: The TPM values from all publicly available mangosteen gene expression experiments were used. First, data filtering was performed to select genes with average transcript per million (TPM) &gt; 1 and coefficient of variation (CV) &gt; 1. Next, WGCNA v1.70 was used in the network analysis to identify genes involved in biosynthesis of anthocyanins and xanthones.
DOI: 10.6084/m9.figshare.25425019.v3
title: Copy of Consent Form and Blank Research Instrument

description: Copy of consent form and blank research instrument retrieved from Google Forms
DOI: 10.6084/m9.figshare.28803926.v1
title: Mothers living with HIV

description: The data of interviews of Indian HIV women living with HIV in Malaysia. (Challenges, burden, caregiving, employment , financial status, health & wellbeing)
DOI: 10.17632/4vv6jf44vf
title: Greenmount agricultural catchment study (Queensland) 1976-1990

description: This catchment study near Greenmount on the eastern Darling Downs 15km south of Toowoomba was established to examine the influence of soil surface conditions on runoff and soil erosion. The study was established in 1976 on a soil representative of one of the major soil types (Black Earth – Irving clay). Management at the paddock scale is likely to strongly influence water quality for the whole catchment, thus the basic unit of hydrology and erosion, a contour catchment was choosen as the focus for this study. This project examined the influence of rainfall depth and intensity, runoff rate and ground cover on suspended sediment moving through a flume at the exit from a contour bay and the effects of contour banks on sediment delivery to streams were evaluated.
Key findings included:
Surface cover was effective in reducing soil movement and runoff from contour bay catchments. Runoff and sediment concentration were both inversely related to surface cover and total soil movement was greatly reduced by surface cover. 
Greater than 75% of the variance in soil movement from single events was explained by surface cover and peak runoff rate. F
ield observations were able to be reproduced within reasonable agreement using the Howleaky water balance model.
DOI: 10.17632/s5twjrhg7n
title: Characteristics of soils and coffee beans from the State of Chiapas, México

description: The data set summarises the information of 139 soil samples in 25 variables. Soil samples were taken from the same number of coffee plantations. From each coffee plantation a cherry-coffee sample of 12 kg was harvested and processed in situ. Coffee samples were evaluated and their composition is described by 16 variables.
DOI: 10.6084/m9.figshare.16653046.v3
title: spatial_timeseries_hydrology

description: See README
DOI: 10.6084/m9.figshare.16727182.v1
title: Detection of binocular chromatic fusion limit for opposite colors: dataset

description: Five subjects were invited to make a forced-choice whether they can fuse a total of 32 opponent color binocular pairs. Due to the binocular color fusion may be affected by color inconsistency between eyes, we swapped the colors of the left and right stimuli. Each opposing color pair will be randomly repeated ten times (5 times for session 1, 5 times for session 2). There were 320 trials (4 groups of opposite directions × 8 pairs of opposite colors × 10 repeats) for an observer, and 1600 test results were collected.
DOI: 10.6084/m9.figshare.22758686.v1
title: Trials

description: Filename convention is CELLNUMBER-HipTA/TA-PATTERN.dat<br> .dat files contain 400 ms pretrigger and 600 ms posttrigger neuronal activity.<br> Each line is a trial.<br> Resolution is 1 ms.<br> Delimiter is ",".<br> Example to load with python:<br> <br> import numpy as <strong>np</strong><br> trials = <strong>np</strong>.loadtxt(filename, delimiter=",")<br> <br>
DOI: 10.17632/3kbhrs9vst
title: Comprehensive shape memory alloys constitutive models for engineering application

description: Experimental data and calculation data of SMA under different loading environments
DOI: 10.17632/vbd4k8p3hs
title: MSTor: A program for calculating partition functions, free energies, enthalpies, entropies, and heat capacities of complex molecules including torsional anharmonicity

description: Abstract We present a Fortran program package, MSTor, which calculates partition functions and thermodynamic functions of complex molecules involving multiple torsional motions by the recently proposed MS-T method. This method interpolates between the local harmonic approximation in the low-temperature limit, and the limit of free internal rotation of all torsions at high temperature. The program can also carry out calculations in the multiple-structure local harmonic approximation. The program packag... Title of program: MSTor Catalogue Id: AEMF_v1_0 Nature of problem Calculation of the partition functions and thermodynamic functions (standard-state energy, enthalpy, entropy, and free energy as functions of temperatures) of complex molecules involving multiple torsional motions. Versions of this program held in the CPC repository in Mendeley Data AEMF_v1_0; MSTor; 10.1016/j.cpc.2012.03.007 AEMF_v2_0; MSTor; 10.1016/j.cpc.2013.03.011 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.6084/m9.figshare.1411252.v1
title: RKeK results

description: This fileset includes majority maps for results in T. Regier, C. Kemp, and P. Kay's “Word meanings across languages support efficient communication” (2015), as well as a similarity measure based on the Adjusted Rand Index calculated between each majority map and each language in a subset of the World Color Survey. Majority map CSV files have the following columns: Name (based on authors names and number of terms), Hue, Lightness, Term (arbitrarily labelled). Material produced for J.P. Correia, R. Ocelák, and J. Mašek's "Towards more realistic modeling of linguistic color categorization" (to appear).
DOI: 10.6084/m9.figshare.21286263.v1
title: Supplementary Material for: “Mild’’ Hypoxic-Ischaemic Encephalopathy and Therapeutic Hypothermia: A Survey of Clinical Practice and Opinion from 35 Countries

description: <b><i>Introduction:</i></b> We aimed to determine global professional opinion and practice for the use of therapeutic hypothermia (TH) for treating infants with mild hypoxic-ischaemic encephalopathy (HIE). <b><i>Methods:</i></b> A web-based survey (REDCap) was distributed via emails, social networking sites, and professional groups from October 2020 to February 2021 to neonatal clinicians in 35 countries. <b><i>Results:</i></b> A total of 484 responses were obtained from 35 countries and categorized into low/middle-income (43%, LMIC) or high-income (57%, HIC) countries. Of the 484 respondents, 53% would provide TH in mild HIE on case-to-case basis and only 25% would never cool. Clinicians from LMIC were more likely to routinely offer TH in mild HIE (25% <i>v</i> HIC 16%, <i>p</i> &lt; 0.05), have a unit protocol for providing TH (50% <i>v</i> HIC 26%, <i>p</i> &lt; 0.05), use adjunctive tools, e.g., aEEG (49% <i>v</i> HIC 32%, <i>p</i> &lt; 0.001), conduct an MRI post TH (48% <i>v</i> HIC 40%, <i>p</i> &lt; 0.05) and less likely to use neurological examinations as a HIE severity grading tool (80% <i>v</i> HIC 95%, <i>p</i> &lt; 0.001). The majority of respondents (91%) would support a randomized controlled trial that was sufficiently large to examine neurodevelopmental outcomes in mild HIE after TH. <b><i>Conclusions:</i></b> This is the first survey of global opinion for TH in mild HIE. The overwhelming majority of professionals would consider “cooling” an infant with mild HIE, but LMIC respondents were more likely to routinely cool infants with mild HIE and use adjunctive tools for diagnosis and follow-up. There is wide practice heterogeneity and a sufficiently large RCT designed to examine neurodevelopmental outcomes, is urgently needed and widely supported.
DOI: 10.17632/ffrk66tnvf
title: Data for: Clustering analysis of countries using the COVID-19 cases dataset

description: Cases of COVID-19 Figure1: per country (per day after the first case and per date), Figure2: clustering of Figure1 data, Figure 3: per country/population (per day after the first case and per date), Figure 4: clustering of Figure3 data, Figure5: per country/population/land area (per day after the first case and per date), Figure 6: clustering of Figure 5 data
DOI: 10.17632/nk6kdhd3zm
title: Replication data for project "Implementation of experiential education in teaching Mathematics in Vietnamese preschool"

description: This dataset surveyed 678 preschool teachers across five cities and provinces in Vietnam from 24 Sep 2023 to 22 Dec 2023. The surveys included seven demographic questions and 53 measurement items on four, five, and six Likert scales. The dataset includes six main sections: (i) Demographics; (ii) Teachers' know how about Mathematics in early years and experiential education; (iii) Teachers' competencies; (iv) Conditions to implement experiential education; (v) School policies; and (vi) Teachers' readiness to implement experiential education. This data set primarily clarified the relationship between readiness to implement experiential education in teaching Mathematics for preschool children and the following factors: self-knowledge; own proficiency level; operating conditions; level of support for implementing experiential education in teaching Mathematics.
DOI: 10.6084/m9.figshare.18855104.v1
title: File S4: from Temporal exponential random graph models of longitudinal brain networks after stroke

description: Estimated tERGM coefficients for stroke patients and healthy controls
DOI: 10.17632/t24p38nbwv
title: HOW FORENSIC ACCOUNTANTS ADD VALUE WHILE INVESTIGATE CLAIMS & FRAUD

description: forensic accounting is one of the emerging tools which can be used by organizations to utilize auditing and investigative skills to conduct a financial examination. Forensic accounting is frequently used in fraud and embezzlement cases to explain the nature of a financial crime in court. In addition, Forensic accountants break down, decipher, and sum up complex monetary and business matters. They might be utilized by insurance agencies, banks, police powers, government organizations, or public bookkeeping firms. Legal accountants accumulate financial proof, foster software applications to deal with the data gathered, and convey their discoveries as reports or introductions. Forensic accountants inspect the information to figure out where missing cash has gone and how to recuperate it. They may likewise introduce reports of their monetary discoveries as proof during hearings, where they regularly affirm as master observers. This work fills a significant need at public accountants and counseling firms, law offices, law requirement organizations, and insurance agencies. The job a criminological bookkeeper plays in every one of these settings shifts. Each firm arrangements with cash in various ways, and tricksters target associations dependent on their obligations. A few bookkeepers work on more extensive extortion cases, like those working at law implementation organizations or law offices. Moreover, accountants who are working in more explicit fields, like public bookkeeping or protection, regularly center explicit kinds of misrepresentation, like protection extortion. In the same context, Legal accountants working at certain organizations are bound to affirm in a court.
DOI: 10.6084/m9.figshare.14602032.v4
title: Data and Codes for Accessibility and Market Potential Analysis

description: Geodatabase FL_data.gdb contains two features (Hospitals and ZIP_Code_Area) and one table (flow_clean). The Python Scripts calculate various accessibility and market potential scores.
DOI: 10.6084/m9.figshare.28194947.v2
title: Dengue treatment systematic review

description: Dengue fever is a vector-borne infectious disease, caused by dengue virus. With no feasible, widely applicable prevention method available in the near term, the need for an effective treatment is of great importance. This systematic review aims to provide a comprehensive overview of potential antiviral, immunomodulatory, and platelet-enhancing therapies for the treatment of dengue
DOI: 10.17632/5hhjhpwk47
title: Data for: Effect of elevated temperatures on strength and microstructure of mortar containing nano-calcined montmorillonite clay

description: The fire resistance of cement-based composite mortars is highly dependent on their mechanical, chemical, and thermal characteristics. This study presents the results of an experimental investigation on the mechanical properties and microstructure of nano-calcined montmorillonite clay (NCMC) cement mortars at high temperatures. The NCMC was prepared via thermal activation of nano-clay, and the produced mortars with progressive NCMC replacements were subjected to temperatures of up to 900 °C. The fire-resistance properties of the produced mortars and their role were analysed through thermo gravimetric analysis, X-ray diffraction, and scanning electron microscopy. Both the residual compressive and flexural strengths of mortars containing NCMC improved after the addition of NCMC. However, the residual compressive strength was enhanced more than the flexural strength, owing to the higher sensitivity of the former to microcracks emerging at elevated temperatures. Microstructural results revealed that the use of thermally treated NCMC having a high surface area and aspect ratio reduced the density and width of microcracks, reduced CH to further produce CSH gel, and strengthened the matrix; these findings explain the higher residual mechanical strengths of the thermally treated NCMC mortars. Furthermore, the mass-loss behaviour improved. The optimum NCMC replacement was determined to be 3% by weight.