cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25387/g3.7823630.v1
title: Supplementary Material for Denker et al., 2019

description: <b>Fig. S1</b>. Maximum likelihood phylogenetic analysis of MTRs in vertebrates. The analysis was done using IQ-TREE with a high-confidence alignment of eighty MTRs (300 amino acid positions; Additional Dataset 1) and the best-fitting amino acid substitution model (JTT+F+I+G4). Numbers on branches are bootstrap support values. Other details as in the Fig. 1 legend (see main text) <b>Table S1</b>. Details of all protein sequences used for phylogenetic analyses of the vertebrate MTR family <b>Table S2</b>. Details of all sequences used for phylogenetic analyses of the vertebrate FAT protocadherin family<br><b>Additional Dataset 1.</b> MTR sequence alignment used for phylogenetic analysis (<i>i.e.</i> Fig. 1; Fig. S1) and for comparative sequence analysis (Fig. 6) <b>Additional Dataset 2. </b>FAT alignment used for phylogenetic analysis (<i>i.e. </i>Fig. 5)<br>
DOI: 10.6084/m9.figshare.3761562.v1200
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.8188421.v2
title: A review of 65 years of human adenovirus seroprevalence

description: <b>Introduction</b>: Human adenovirus (HAdV)-derived vectors have been used in numerous pre-clinical and clinical trials during the last 40 years. Current research in HAdV-based vaccines focuses on improving transgene immunogenicity and safety. Because pre-existing humoral immunity against HAdV types correlate with reduced vaccine efficacy and safety, many groups are exploring the development of HAdV types vectors with lower seroprevalence. However, global seroepidemiological data are incomplete. <b>Areas covered</b>: The goal of this review is to centralize 65 years of research on (primarily) HAdV epidemiology. After briefly addressing adenovirus biology, we chronical HAdV seroprevalence studies and highlight major milestones. Finally, we analyze data from about 50 studies with respect to HAdVs types that are currently used in the clinic, or are in the developmental pipeline. <b>Expert opinion</b>: Vaccination is among the most efficient tools to prevent infectious disease. HAdV-based vaccines have undeniable potential, but optimization is needed and antivector immunity remains a challenge if the same vectors are to be administrated to different populations. Here, we identify gaps in our knowledge and the need for updated worldwide epidemiological data.
DOI: 10.25405/data.ncl.9639143
title: Data supporting publication: Simulating seeded vacuum decay in a cold atom system

description: This data includes the results of computer simulations for the article "Simulating seeded vacuum decay in a cold atom system". We consider a vortex in a Bose-Einstein condensate system as an analogue of the concept of seeded vacuum decay. We treat the system both by adapting standard instanton methods to the Gross-Pitaevskii equation, and by using the trucated Wigner stochastic method.<br><br>Publication reference: Simulating seeded vacuum decay in a cold atom system [Phys. Rev. D 100, 065016 (2019) https://link.aps.org/doi/10.1103/PhysRevD.100.065016 (preprint: https://arxiv.org/abs/1811.09169)<br><br>Data were produced computationally as described in the paper.<br>
DOI: 10.6084/m9.figshare.3761562.v1201
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v1202
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v1203
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.25387/g3.9383543
title: Supplementary material for Momen et al., 2019

description: Supplementary material for Momen et al., 2019<br>FileS1.csv: Phenotypic data<br>FileS2.txt: Genotypic data<br>FileS3.pdf: Linear and quadratic forms of Legendre polynomials (left) and three and four knots B-spline curves (right) over 20 days of imaging.<br>
DOI: 10.25387/g3.9383543.v1
title: Supplementary material for Momen et al., 2019

description: Supplementary material for Momen et al., 2019<br>FileS1.csv: Phenotypic data<br>FileS2.txt: Genotypic data<br>FileS3.pdf: Linear and quadratic forms of Legendre polynomials (left) and three and four knots B-spline curves (right) over 20 days of imaging.<br>
DOI: 10.6084/m9.figshare.3761562.v1204
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.25386/genetics.9272834
title: Supplemental Material for Mulder et al., 2019

description: This file contains additional figures.
DOI: 10.25386/genetics.9272834.v1
title: Supplemental Material for Mulder et al., 2019

description: This file contains additional figures.
DOI: 10.25387/g3.8266763
title: Supplemental Material for Cokus et al., 2019

description: File S1 contains supplemental methods. File S2 contains comprehensive heatmaps of Gene Ontology enrichments (retaining all rows and columns containing any <i>p</i>-value ≤ 0.0001), extending Figure 4. File S3 contains a comparison of keratin genes and chromosomal locations between our findings and (Krushna Padhi et al. 2006). File S4 contains InterPro domain hit summaries used in the compilation of zebrafish type I and II keratins. File S5 contains comprehensive heatmaps of expressed genes (those with normalized transformed [log2-scale] counts ≥ 2.5 [i.e., ≥ ~5.7 in linear scale] in at least one condition) that encode cell surface receptors, transcription factors, and actin-binding proteins, extending Figure 5B–D. Figure S1 contains a phylogenetic tree of keratin and intermediate filament genes in zebrafish. Figure S2 contains gene expression plots (in similar style as Figure 2A) for all type I and II keratin zebrafish genes.
DOI: 10.25387/g3.8266763.v1
title: Supplemental Material for Cokus et al., 2019

description: File S1 contains supplemental methods. File S2 contains comprehensive heatmaps of Gene Ontology enrichments (retaining all rows and columns containing any <i>p</i>-value ≤ 0.0001), extending Figure 4. File S3 contains a comparison of keratin genes and chromosomal locations between our findings and (Krushna Padhi et al. 2006). File S4 contains InterPro domain hit summaries used in the compilation of zebrafish type I and II keratins. File S5 contains comprehensive heatmaps of expressed genes (those with normalized transformed [log2-scale] counts ≥ 2.5 [i.e., ≥ ~5.7 in linear scale] in at least one condition) that encode cell surface receptors, transcription factors, and actin-binding proteins, extending Figure 5B–D. Figure S1 contains a phylogenetic tree of keratin and intermediate filament genes in zebrafish. Figure S2 contains gene expression plots (in similar style as Figure 2A) for all type I and II keratin zebrafish genes.
DOI: 10.25405/data.ncl.9693533
title: A comparative assessment of conventional and molecular methods, including MinION nanopore sequencing, for surveying water quality

description: The deposit contains chemical and microbial water quality data for samples collected in the Kathmandu Valley, Nepal.
DOI: 10.6084/m9.figshare.9697574
title: of Diurnal regulation of SDG2 and JMJ14 by circadian clock oscillators orchestrates histone modification rhythms in Arabidopsis

description: of Diurnal regulation of SDG2 and JMJ14 by circadian clock oscillators orchestrates histone modification rhythms in Arabidopsis
DOI: 10.25400/lincolnuninz.9122507.v1
title: Appendix E Fungal guilds and synonymy of endophytic fungi isolated from cabbage in New Zealand 2015 and 2016

description: <br>List of recovered isolates in this project with the most likely species name and current synonymy based on NZFUNGI2 by Manaaki Whenua Landcare research. Fungal guilds are provided according to an online tool FUNGuild<br>
DOI: 10.6084/m9.figshare.9697574.v1
title: Additional file 1: of Diurnal regulation of SDG2 and JMJ14 by circadian clock oscillators orchestrates histone modification rhythms in Arabidopsis

description: Supplementary Figure S1â S8. (PS 3131 kb)
DOI: 10.5519/qd.0ic40s4a
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (810853 records)
DOI: 10.6084/m9.figshare.3761562.v1207
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.8175158.v1
title: DataTrachemysScripta.csv

description: Data that includes the native and non-native (alien) ocurrence records for Trachemys scripta used in the study, our generated random points (bg), and all corresponding climatic variables values. BIO1: annual mean temperature, BIO10: mean temperature of the warmest quarter, BIO11: mean temperature of the coldest quarter, BIO12: annual precipitation, BIO14: precipitation of driest month, RAD: annual mean radiation, NearDist: Euclidian distance to the nearest freshwater body.
DOI: 10.21943/auas.9505436.v1
title: Active ingredients and mechanisms of change in motivational interviewing for medication adherence. A mixed methods study of patient-therapist interaction in patients with schizophrenia

description: Active ingredients and mechanisms of change in motivational interviewing for medication adherence. A mixed methods study of patient-therapist interaction in patients with schizophrenia<br>Coding instrumentsMotivational Interviewing Skill Code 2.1 (MISC 2.1) For the global ratings:* Acceptance* Empathy* MI-Spirit (consisting of Collaboration, Autonomy, and Evocation)* Self-exploration<br>Motivational Interviewing Sequential Code for Observing Process Exchanges (MI-SCOPE)Therapist behaviour codesClient behaviour codes<br>Study populationFourteen patients (MATCH-trial, see references).Five therapists (see reference 1).<br>Data and data coding codingThe data consisted of 66 audio recorded and transcribed MI-sessions. For the exact coding procedures: see reference 1.The coded data consist of 14 excel-files. Each file consists of 3 to 8 MI-sessions (S1, S2, etcetera). Extended data description: see under data files: FigShare-Art3
DOI: 10.25387/g3.9159479.v2
title: Supplemental Material for Love et al., 2019

description: Supplementary figures S1-S4 and supplementary tables S1-S8 for "In silico karyotyping of chromosomally polymorphic malaria mosquitoes in the <i>Anopheles gambiae</i> complex"<br>
DOI: 10.25386/genetics.9389255.v2
title: Supplemental Material for Gimond et al., 2019

description: Supplemental Material for Gimond et al., 2019
DOI: 10.25387/g3.8060006
title: Supplemental Material for Hime et al., 2019

description: Illumina (ddRADseq) sequence data for 20 individual <i>Cryptobranchus</i> salamanders used in this study.
DOI: 10.25387/g3.8060006.v1
title: Supplemental Material for Hime et al., 2019

description: Illumina (ddRADseq) sequence data for 20 individual <i>Cryptobranchus</i> salamanders used in this study.
DOI: 10.6084/m9.figshare.3761562.v1208
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.25405/data.ncl.9715703.v1
title: Quench dynamics of an ultracold two-dimensional Bose gas raw data

description: Raw data underpinning figures in paper entilted "Quench dynamics of an ultracold two-dimensional Bose gas "
DOI: 10.25387/g3.9701600.v1
title: Supplemental Material for Bosnjak et al., 2019

description: Alignment of FLBA proteins from Neurospora crassa and Aspergillus nidulans, The position of the first amino acid changed due to the frameshift mutation present in N. crassa strains expressing high levels of uninduced alternative oxidase transcript is indicated.
DOI: 10.25405/data.ncl.9715703
title: Quench dynamics of an ultracold two-dimensional Bose gas raw data

description: Raw data underpinning figures in paper entilted "Quench dynamics of an ultracold two-dimensional Bose gas "
DOI: 10.25387/g3.9701600
title: Supplemental Material for Bosnjak et al., 2019

description: Alignment of FLBA proteins from Neurospora crassa and Aspergillus nidulans, The position of the first amino acid changed due to the frameshift mutation present in N. crassa strains expressing high levels of uninduced alternative oxidase transcript is indicated.
DOI: 10.5519/qd.owk3b2xw
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (6559 records)
DOI: 10.25387/g3.7823987
title: Supplemental Material for Chen et al., 2019

description: Five supplementary tables: S1 Contig length and depth; S2 Functional annotation; S3 Secreted protein genes; S4 Variants in secreted protein genes; S5 Candidates for Avirulence genes
DOI: 10.25387/g3.7823987.v1
title: Supplemental Material for Chen et al., 2019

description: Five supplementary tables: S1 Contig length and depth; S2 Functional annotation; S3 Secreted protein genes; S4 Variants in secreted protein genes; S5 Candidates for Avirulence genes
DOI: 10.25387/g3.9458072
title: Supplemental Material for Webster et al., 2019

description: Includes Supplementary File 1, Supplementary Figure 1, and Supplementary Figure 2
DOI: 10.25387/g3.9458072.v1
title: Supplemental Material for Webster et al., 2019

description: Includes Supplementary File 1, Supplementary Figure 1, and Supplementary Figure 2
DOI: 10.6084/m9.figshare.8161430.v4
title: Computer vision to automatically assess infant neuromotor risk

description: Computer vision to automatically assess infant neuromotor risk<br><br>Claire Chambers, Nidhi Seethapathi, Rachit Saluja, Helen Loeb, Samuel Pierce, Daniel Bogen, Laura Prosser, Michelle J. Johnson, and Konrad Paul Kording<br>Code and instructions: https://github.com/cchamber/Infant_movement_assessment<br>This data set contains:- System to extract pose estimates from video. (pose_extraction.zip)- Zip file with 'data' and 'models' folders to add to code repository (infant_movement_assessment_repo_files.zip) - Meta-data of YouTube videos in normative database of healthy infant movement (meta_data_youtube_dataset.csv) - Meta-data of at-risk infant videos recorded in laboratory (meta_data_clinical_dataset.csv) - Raw pose estimates from YouTube videos included in normative database of healthy infant movement (pose_estimates_youtube_dataset.csv) - Raw pose estimates from videos recorded in laboratory (pose_estimates_clinical_dataset.csv)- URLs of YouTube videos used to adapt pose-estimation algorithm (URL_labelled_dataset.csv)- URLs of YouTube videos used for normative database of healthy infant movement (URL_pose_dataset.csv)- Search terms used to find infant videos on YouTube for adapting OpenPose and to include in the normative database of healthy infant movement (search_terms.txt)- Visualization of kinematic features<br><br>
DOI: 10.6084/m9.figshare.9728555
title: MOESM1 of Patients’ out-of-pocket expenses analysis of presurgical teledermatology

description: Additional file 1. Data used to estimate out-of-pocket expenses.
DOI: 10.6084/m9.figshare.9728555.v1
title: MOESM1 of Patients’ out-of-pocket expenses analysis of presurgical teledermatology

description: Additional file 1. Raw data (Table A) and analysed data (Table B) used to estimate out-of-pocket expenses.
DOI: 10.6084/m9.figshare.3761562.v1209
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.9729803.v1
title: data of High Glucose Variability Increases 30-Day Readmission Rates in Patients with Type 2 Diabetes Hospitalized in Department of Surgery.pdf

description: Decreasing glucose variability during admission for surgery is important for patients with type 2 DM to decreasing re-admission rates. Measurement of HBA1c may identify patients at higher risk of postoperative complications and possibility of re-admission.
DOI: 10.25573/data.9695918
title: Mangroves marching northward: the impacts of rising seas and temperatures on ecosystems at Kennedy Space Center

description: The climate change-induced expansion of mangroves into salt marshes could significantly alter the carbon (C) storage capacity of coastal wetlands, which have the highest average C storage per land area among unmanaged terrestrial ecosystems. Mangrove range expansion is occurring globally, but little is known about how these rapid climate-driven shifts may alter ecosystem C storage. Here, we quantify current C stocks in ecotonal wetlands across gradients of marsh- to mangrove-dominance, and use unique chronological maps of vegetation cover to estimate C Stock changes from 2003 to 2010 in a 567-km<sup>2</sup> wildlife refuge in the mangrove-salt marsh ecotone. This data release is associated with the following publication in Estuaries and Coasts: https://doi.org/10.1007/s12237-015-9993-8.
DOI: 10.25573/data.9695918.v1
title: Mangroves marching northward: the impacts of rising seas and temperatures on ecosystems at Kennedy Space Center

description: The climate change-induced expansion of mangroves into salt marshes could significantly alter the carbon (C) storage capacity of coastal wetlands, which have the highest average C storage per land area among unmanaged terrestrial ecosystems. Mangrove range expansion is occurring globally, but little is known about how these rapid climate-driven shifts may alter ecosystem C storage. Here, we quantify current C stocks in ecotonal wetlands across gradients of marsh- to mangrove-dominance, and use unique chronological maps of vegetation cover to estimate C Stock changes from 2003 to 2010 in a 567-km<sup>2</sup> wildlife refuge in the mangrove-salt marsh ecotone. This data release is associated with the following publication in Estuaries and Coasts: https://doi.org/10.1007/s12237-015-9993-8.
DOI: 10.6084/m9.figshare.8175254.v2
title: Microclimatic variables influence the temporal dynamics of an anuran metacommunity in a non-stationary way

description: Understanding the temporal dynamics of communities is crucial to elucidate how communities respond to climate change. The activities of ectothermic vertebrates are sensitive to climatic variations due to their sensibility to temperature and humidity. However, the factors that affect the temporal dynamics of communities of terrestrial ectothermic vertebrate remain poorly known. Here, we tested how microclimatic variables influence anuran species composition and if species abundances are stable through time in a metacommunity in the Atlantic Forest of southern Brazil. Using a multivariate method, called STATICO, we described the stable patterns and the spatio-temporal changes of the relationship between species composition and the microclimatic variables. We found that species turnover showed an asynchronous spatial pattern, while species composition exhibited a non-stationary response to climate, which was mainly related to temperature, rainfall, and humidity during the spring and summer. These results suggest storage effect as the main coexistence mechanism at play in the metacommunity, in which the asynchronous fluctuations promote species coexistence under a scenario of environmental variability.<br><br>
DOI: 10.25387/g3.8427110.v1
title: Supplemental Material for Confalonieri et al., 2019

description: Figure S1 contains the analysis of the PTB domain containing proteins found in the 31 organisms analyzed.<br>Figure S2 contains the alignment of NUMB and NUMBL proteins found.<br>Figure S3 contains the alignment of vertebrate NUMB and NUMBL proteins and their gene structure analysis.<br>Figure S4 contains the alignment of the NumbF domain of the NUMB and NUMBL proteins.<br>Figure S5 contains the analysis of the two NUMB proteins found in Oikopleura dioica.<br>Figure S6 contains the analysis of the NUMB and NUMBL proteins found in Petromyzon marinus (Sea Lamprey) and in Lethenteron camtschaticum (Arctic Lamprey)<br>File S1 contains the legend of all Supplemental Figures, two supplemental Tables, and the legend of the supplemental tables. Table S1 contains the list of the organisms analyzed in this study, Table S2 contains the list of all human PTB containing proteins, with accession numbers and gene name descriptions.<br>Table S3 is an multiple sheet excel file and contains the detailed output of the HMMER protein database searches, together with accession numbers, protein domain composition and closest homologs identified by reverse BLAST search for each identified protein. <br>
DOI: 10.6084/m9.figshare.9118490.v1
title: Data from: Aerial Seismology using Balloon-Based Barometers

description: These data are related to the seismic hammer experiment discussed in "Aerial Seismology using Balloon-Based Barometers" by Krishnamoorthy et al. (IEEE Transactions on Geoscience and Remote Sensing, 2019).<br><br>The zip file contains the location, time and vertical motion velocity data in m/s from geophones placed near the seismic hammer. The first line in each .dat file contains the lat-long of the geophone. The time is shot relative: t=0 is the shot time. The shots are also highly repeatable, each trace is representative of all shots in the 39 shot sequence used in the main paper.<br>The location of the hammer, shot times, and barometer data may be obtain from the Figshare data repository at <br><br>https://figshare.com/articles/Data_from_Detection_of_Artificially_Generated_Seismic_Signals_using_Balloon-borne_Infrasound_Sensor/6137507<br>
DOI: 10.25387/g3.8427110
title: Supplemental Material for Confalonieri et al., 2019

description: Figure S1 contains the analysis of the PTB domain containing proteins found in the 31 organisms analyzed.<br>Figure S2 contains the alignment of NUMB and NUMBL proteins found.<br>Figure S3 contains the alignment of vertebrate NUMB and NUMBL proteins and their gene structure analysis.<br>Figure S4 contains the alignment of the NumbF domain of the NUMB and NUMBL proteins.<br>Figure S5 contains the analysis of the two NUMB proteins found in Oikopleura dioica.<br>Figure S6 contains the analysis of the NUMB and NUMBL proteins found in Petromyzon marinus (Sea Lamprey) and in Lethenteron camtschaticum (Arctic Lamprey)<br>File S1 contains the legend of all Supplemental Figures, two supplemental Tables, and the legend of the supplemental tables. Table S1 contains the list of the organisms analyzed in this study, Table S2 contains the list of all human PTB containing proteins, with accession numbers and gene name descriptions.<br>Table S3 is an multiple sheet excel file and contains the detailed output of the HMMER protein database searches, together with accession numbers, protein domain composition and closest homologs identified by reverse BLAST search for each identified protein. <br>
DOI: 10.6084/m9.figshare.3761562.v1212
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.