cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7617206
title: Germinal Center and Cultured B cell expression libraries

description: Comparison of gene expression profiles between in vitro mitogen-activated spleen B lymphocytes and FACS-sorted Germinal Center B lymphocytes isolated from intestinal PeyerPatches of C57BL/6 mice. In order to explore gene expression signatures that may be orchestrating somatic hypermutation (SHM, also known as affinity maturation) during antigen-induced B lymphocyte differentiation in Germinal Centers (GC), we profiled whole transcriptome gene expression of ex vivo, commensal microflora-activated GC B-cells that exhibit efficient SHM, with in vitro activated B-cell blasts, which fail to undergo SHM. In In particular, we examine our hypothesis that differential expression or the DNA endonucleases apex1 and apex2 regulate SHM. Using Templated Oligo Sequencing (TempO-Seq®) in conjunction with conventional intracellular FACS staining and B lymphocyte cell sorting, we compare gene expression profiles of in vitro mitogen-activated (LPS and anti-IgD-dextran), short-term (48h) cultured B cell blasts with Germinal Center B-cells isolated from intestinal Peyer Patches (PP, identified by surface staining B220+, CD95+, GL7+), compared to each other and to naive PP B-cells (B220+, CD95-, GL7-). We find that unique, distinct transcriptional signatures dominate the DNA repair processes in GC B-cells or in vitro B-cell blast, shedding light on genomic processes that orchestrate efficient affinity maturation of B-cells during GC differentiation. We use Templated Oligo Sequencing (TempO-Seq), a RNA motif-specific short tandem Oligo DNA hybridization technique to quantitatively measure whole transcriptome mRNA in conjunction with conventional surface membrane, fixable live/dead discriminator dye, and intracytoplasmic fluorescence antibody staining followed by FACS to isolate B cell populations of interest.
description: Funded by NIH grants AI26122, AI023283, AI099988, and SBIR Phase II grant 2R44HG008917 to BioSypder
DOI: 10.6084/m9.figshare.22041701
title: Electromagnetic and climatic foundations of intergroup discrimination

description: Data set utilized in study submitted to Journal of Cross-Cultural Psychology <br>
DOI: 10.6084/m9.figshare.22041701.v1
title: Electromagnetic and climatic foundations of intergroup discrimination

description: Data set utilized in study submitted to Journal of Cross-Cultural Psychology <br>
DOI: 10.5517/ccdc.csd.cc2cbc9d
title: CCDC 2184703: Experimental Crystal Structure Determination

description: Related Article: Shuang-Shuang Liu, Wei-Na Wu, Xiao-Lei Zhao, Yun-Chang Fan, Yuan Wang, Zhi-Hong Xu|2023|Anal.Chim.Acta|1245|340867|doi:10.1016/j.aca.2023.340867
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cjt3v
title: CCDC 2190897: Experimental Crystal Structure Determination

description: Related Article: Yoshifumi Hashikawa, Yasujiro Murata|2023|Chem.Commun.|59|1645|doi:10.1039/D2CC06531B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cjvd5
title: CCDC 2190937: Experimental Crystal Structure Determination

description: Related Article: Xin Liu, Weiyi She, Herman H.-Y. Sung, Ian D. Williams, Peiyuan Qian|2023|Int.J.Biol.Macromol.|231|123170|doi:10.1016/j.ijbiomac.2023.123170
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cxgvm
title: CCDC 2202111: Experimental Crystal Structure Determination

description: Related Article: Shigetada Uemura, Susumu Oda, Masahiro Hayakawa, Ryosuke Kawasumi, Naoya Ikeda, Yi-Ting Lee, Chin-Yiu Chan, Youichi Tsuchiya, Chihaya Adachi, Takuji Hatakeyama|2022|J.Am.Chem.Soc.|145|1505|doi:10.1021/jacs.2c10946
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2czx2c
title: CCDC 2204443: Experimental Crystal Structure Determination

description: Related Article: Hironobu Nakazawa, Yuta Uetake, Yumi Yakiyama, Hidehiro Sakurai|2022|Asian J.Org.Chem|12|e202200585|doi:10.1002/ajoc.202200585
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.17311541
title: Additional Support Files- Population structure and intraspecific ecological niche differentiation point to lineage divergence promoted by polyploidization in Psidium cattleyanum (Myrtaceae)

description: Additional Support Files to run manuscript analysis <br>Population structure and intraspecific ecological niche differentiation point to lineage divergence promoted by polyploidization in Psidium cattleyanum (Myrtaceae)<br><br><br>####Files descriptions:<br><br>*final.txt -Genotyping dataset of 328 individuals *ploidias- Ploidy information of 328 individuals*PLOIDIA3- Ploidy names and geographic coordinates of 328 individuals <br>######- genetic. RR codes for SSR genetic analysis<br>- regression. RR codes for linear regression models of diversity indexes<br>####To entirely run the PCA_vars, MMRR and niche R script, you have to download additional files from their sources:<br>Download the biolcimate variables from WorldClim (https://worldclim.org/data/worldclim21.html)and solar radiation (kJ m-2 day-1).<br>- PCA_vars. RR codes for PCA of environment variable <br>-niche. RR codes for Niche Modeling analysis <br>-MMRR. RR codes for MMRR test in R environment
DOI: 10.6084/m9.figshare.17311541.v1
title: Additional Support Files- Population structure and intraspecific ecological niche differentiation point to lineage divergence promoted by polyploidization in Psidium cattleyanum (Myrtaceae)

description: Additional Support Files to run manuscript analysis <br>Population structure and intraspecific ecological niche differentiation point to lineage divergence promoted by polyploidization in Psidium cattleyanum (Myrtaceae)<br><br><br>####Files descriptions:<br><br>*final.txt -Genotyping dataset of 328 individuals *ploidias- Ploidy information of 328 individuals*PLOIDIA3- Ploidy names and geographic coordinates of 328 individuals <br>######- genetic. RR codes for SSR genetic analysis<br>- regression. RR codes for linear regression models of diversity indexes<br>####To entirely run the PCA_vars, MMRR and niche R script, you have to download additional files from their sources:<br>Download the biolcimate variables from WorldClim (https://worldclim.org/data/worldclim21.html)and solar radiation (kJ m-2 day-1).<br>- PCA_vars. RR codes for PCA of environment variable <br>-niche. RR codes for Niche Modeling analysis <br>-MMRR. RR codes for MMRR test in R environment
DOI: 10.6084/m9.figshare.22043243
title: Weaving patterns inspired by the pentagon snub subdivision scheme

description: Various computer simulations regarding, e.g. the weather or structural mechanics, solve complex problems on a two-dimensional domain. They mostly do so by splitting the input domain into a finite set of smaller and simpler elements on which the simulation can be run fast and efficiently. This process of splitting can be automatized by using subdivision schemes. Given the wide range of simulation problems to be tackled, an equally wide range of subdivision schemes is available. This paper illustrates a subdivision scheme that splits the input domain into pentagons. Repeated application gives rise to fractal-like structures. Furthermore, the resulting subdivided domain admits to certain weaving patterns. These patterns are subsequently generalized to several other subdivision schemes. As a final contribution, we provide paper models illustrating the weaving patterns induced by the pentagonal subdivision scheme. Furthermore, we present a jigsaw puzzle illustrating both the subdivision process and the induced weaving pattern. These transform the visual and abstract mathematical algorithms into tactile objects that offer exploration possibilities aside from the visual.
DOI: 10.6084/m9.figshare.22043243.v1
title: Weaving patterns inspired by the pentagon snub subdivision scheme

description: Various computer simulations regarding, e.g. the weather or structural mechanics, solve complex problems on a two-dimensional domain. They mostly do so by splitting the input domain into a finite set of smaller and simpler elements on which the simulation can be run fast and efficiently. This process of splitting can be automatized by using subdivision schemes. Given the wide range of simulation problems to be tackled, an equally wide range of subdivision schemes is available. This paper illustrates a subdivision scheme that splits the input domain into pentagons. Repeated application gives rise to fractal-like structures. Furthermore, the resulting subdivided domain admits to certain weaving patterns. These patterns are subsequently generalized to several other subdivision schemes. As a final contribution, we provide paper models illustrating the weaving patterns induced by the pentagonal subdivision scheme. Furthermore, we present a jigsaw puzzle illustrating both the subdivision process and the induced weaving pattern. These transform the visual and abstract mathematical algorithms into tactile objects that offer exploration possibilities aside from the visual.
DOI: 10.6084/m9.figshare.22043252
title: Latent tuberculosis in hemodialysis patients

description: The code necessary to replicate the analysis.
DOI: 10.6084/m9.figshare.22043252.v1
title: Latent tuberculosis in hemodialysis patients

description: The code necessary to replicate the analysis.
DOI: 10.5281/zenodo.7608666
title: Studying Bug-Fixing Commits in the WoC Dataset: Replication Package

description: A replication package for the MSR 2023 Challenge submission titled "Studying Bug-Fixing Commits in the WoC Dataset".
DOI: 10.5281/zenodo.7608665
title: Studying Bug-Fixing Commits in the WoC Dataset: Replication Package

description: A replication package for the MSR 2023 Challenge submission titled "Studying Bug-Fixing Commits in the WoC Dataset".
DOI: 10.6084/m9.figshare.22043195
title: DCE-MRI raw data

description: Estimating glomerular filtration rate (GFR) is crucial for diagnostic purposes. DCE-MRI is capable of measuring tracer kinetic parameters of kidney function. This is a DCE-MRI data for renal imaging acquired by radialVIBE with a multi-channel body-matrix coil on a 3T Siemens Skyra MRI scanner. 5304 radial spokes were acquired with a total scan time of 8.3 mins. Imaging resolution was 1.00x1.00x3.00 mm<sup>3</sup> and number of slices was 32.
DOI: 10.18112/openneuro.ds000224.v1.0.4
title: The Midnight Scan Club (MSC) dataset
DOI: 10.5281/zenodo.7617934
title: balanus_nubilus_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.7617933
title: balanus_nubilus_spades_01.fasta.gz

description: .
DOI: 10.5517/ccdc.csd.cc2d0ny1
title: CCDC 2205183: Experimental Crystal Structure Determination

description: Related Article: Li Ji, Ping Song, Youyun Zhou, Xiu-Li Sun, Yanshan Gao, Yong Tang|2023|Polym.Chem.|14|763|doi:10.1039/D2PY01509A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d1dvq
title: CCDC 2205893: Experimental Crystal Structure Determination

description: Related Article: Andrey N. Komogortsev, Boris V. Lichitsky, Valeriya G. Melekhina|2023|Synth.Commun.|53|58|doi:10.1080/00397911.2022.2150975
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d45mc
title: CCDC 2208552: Experimental Crystal Structure Determination

description: Related Article: Mashael M. Alharbi, Yara van Ingen, Alberto Roldan, Tanja Kaehler, Rebecca L. Melen|2023|Dalton Trans.|52|1820|doi:10.1039/D2DT04095F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d45nd
title: CCDC 2208553: Experimental Crystal Structure Determination

description: Related Article: Mashael M. Alharbi, Yara van Ingen, Alberto Roldan, Tanja Kaehler, Rebecca L. Melen|2023|Dalton Trans.|52|1820|doi:10.1039/D2DT04095F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d48vp
title: CCDC 2208652: Experimental Crystal Structure Determination

description: Related Article: Mashael M. Alharbi, Yara van Ingen, Alberto Roldan, Tanja Kaehler, Rebecca L. Melen|2023|Dalton Trans.|52|1820|doi:10.1039/D2DT04095F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d6gy1
title: CCDC 2210763: Experimental Crystal Structure Determination

description: Related Article: Chao Chen, He Lv, Hao Xu, Dancheng Zhu, Chao Shen|2023|Dalton Trans.|52|1671|doi:10.1039/D2DT03405K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d6gz2
title: CCDC 2210764: Experimental Crystal Structure Determination

description: Related Article: Chao Chen, He Lv, Hao Xu, Dancheng Zhu, Chao Shen|2023|Dalton Trans.|52|1671|doi:10.1039/D2DT03405K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d6h04
title: CCDC 2210765: Experimental Crystal Structure Determination

description: Related Article: Chao Chen, He Lv, Hao Xu, Dancheng Zhu, Chao Shen|2023|Dalton Trans.|52|1671|doi:10.1039/D2DT03405K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d6h15
title: CCDC 2210766: Experimental Crystal Structure Determination

description: Related Article: Chao Chen, He Lv, Hao Xu, Dancheng Zhu, Chao Shen|2023|Dalton Trans.|52|1671|doi:10.1039/D2DT03405K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d6nny
title: CCDC 2210940: Experimental Crystal Structure Determination

description: Related Article: A. N. Reznikov, M. A. Ashatkina, S. Y. Vostruhina, Y. N. Klimochkin|2022|CSD Communication|||
description: Related Article: Alexander N. Reznikov, Maria A. Ashatkina, Svetlana Yu. Vostruhina, Yuri N. Klimochkin|2022|Tetrahedron Lett.|116|154322|doi:10.1016/j.tetlet.2022.154322
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d7bkk
title: CCDC 2211588: Experimental Crystal Structure Determination

description: Related Article: Yuanyuan Feng, Hanqi Zhang, Biao Gao, Guijuan Zheng, Suqin Zha, Guangmin Yao|2023|Bioorg.Chem.|132|106374|doi:10.1016/j.bioorg.2023.106374
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d7bll
title: CCDC 2211589: Experimental Crystal Structure Determination

description: Related Article: Yuanyuan Feng, Hanqi Zhang, Biao Gao, Guijuan Zheng, Suqin Zha, Guangmin Yao|2023|Bioorg.Chem.|132|106374|doi:10.1016/j.bioorg.2023.106374
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d7bmm
title: CCDC 2211590: Experimental Crystal Structure Determination

description: Related Article: Yuanyuan Feng, Hanqi Zhang, Biao Gao, Guijuan Zheng, Suqin Zha, Guangmin Yao|2023|Bioorg.Chem.|132|106374|doi:10.1016/j.bioorg.2023.106374
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d7bnn
title: CCDC 2211591: Experimental Crystal Structure Determination

description: Related Article: Yuanyuan Feng, Hanqi Zhang, Biao Gao, Guijuan Zheng, Suqin Zha, Guangmin Yao|2023|Bioorg.Chem.|132|106374|doi:10.1016/j.bioorg.2023.106374
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d7bpp
title: CCDC 2211592: Experimental Crystal Structure Determination

description: Related Article: Yuanyuan Feng, Hanqi Zhang, Biao Gao, Guijuan Zheng, Suqin Zha, Guangmin Yao|2023|Bioorg.Chem.|132|106374|doi:10.1016/j.bioorg.2023.106374
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d7bqq
title: CCDC 2211593: Experimental Crystal Structure Determination

description: Related Article: Yuanyuan Feng, Hanqi Zhang, Biao Gao, Guijuan Zheng, Suqin Zha, Guangmin Yao|2023|Bioorg.Chem.|132|106374|doi:10.1016/j.bioorg.2023.106374
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d7brr
title: CCDC 2211594: Experimental Crystal Structure Determination

description: Related Article: Yuanyuan Feng, Hanqi Zhang, Biao Gao, Guijuan Zheng, Suqin Zha, Guangmin Yao|2023|Bioorg.Chem.|132|106374|doi:10.1016/j.bioorg.2023.106374
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d7bss
title: CCDC 2211595: Experimental Crystal Structure Determination

description: Related Article: Yuanyuan Feng, Hanqi Zhang, Biao Gao, Guijuan Zheng, Suqin Zha, Guangmin Yao|2023|Bioorg.Chem.|132|106374|doi:10.1016/j.bioorg.2023.106374
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.