cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23645/epacomptox.6062641.v2
title: ToxCast Cytotoxicity-Associated Burst

description: Title: ToxCast Cytotoxicity-Associated Burst Paragraph: Chemical toxicity can arise from disruption of specific biomolecular functions or through more generalized cell stress and cytotoxicity-mediated processes. Evaluating the ToxCast high-throughput screening library, many chemicals show activation of large numbers of assays over a narrow range of concentrations in which cell stress and cytotoxicity are also seen. We term this phenomenon the cytotoxicity-associated “burst”. Whereas some of the assay activity in this concentration range may represent chemical effects on the intended target of the assay, some of it is not. In such situations, activity represents a false positive response that can be ascribed to assay interference processes. This phenomenon raises the need to establish a concentration threshold at which each chemical begins to drive activity across multiple and diverse cell stress and cytotoxicity assays by initiating this cytotoxicity-associated burst of activity. Judson R, et al . Analysis of the Effects of Cell Stress and Cytotoxicity on In Vitro Assay Activity Across a Diverse Chemical and Assay Space. Toxicol Sci. 2016 Oct;153(2):409. doi: 10.1093/toxsci/kfw148. Epub 2016 Sep 7. Erratum for: Toxicol Sci. 2016 Aug;152(2):323-39. PMID: 27605417; PMCID: PMC7297301. <br> These data are based on ToxCast invitroDBv3.5
DOI: 10.6084/m9.figshare.6152015.v1
title: Spark Plasma Sintering of a Hard Metal Powder Obtained from Hard Metal Scrap

description: Spark plasma sintering is used to consolidate a WC-Co powder produced from milled discharged hard metal cutting inserts. The powder was mixed to 10%wt Co powder and spark plasma sintered (SPS) under 80Mpa pressure, at 1200ºC with heating rate of 160ºC/min. A reference alloy was prepared with a commercial WC powder and 10%wt. Co under the same conditions. The structures of both alloys were investigated by means of scanning electron microscopy and Vickers hardness. The results show structures with densities and hardness at the same level. SPS can be used to produce hard metal pieces directly from scrap powder without any prior chemical and thermal treatment.
DOI: 10.6084/m9.figshare.21948146.v1
title: Supplemental Table S1.pdf

description: Supplementary Datas JCEM manuscript jc.2022-02330
DOI: 10.6084/m9.figshare.17009660.v1
title: Whitt 2021 LES paper, Data for plotting ROMS results

description: ROMS output
DOI: 10.6084/m9.figshare.12459056.v24
title: agnostosDB_dbf02445-20200519

description: The agnostosDB (dbf02445-20200519) is a comprehensive dataset of microbial gene clusters (GCs) from genomes and metagenomes. It contains 5,287,759 GCs and more than 280M genes coming from the bacterial and archaeal Genome Taxonomy Database (GTDB) genomes, and from five large-scale metagenomic projects: 583 marine metagenomes from Tara Oceans expedition (TARA), Malaspina expedition, Ocean Sampling Day (OSD), Global Ocean Sampling Expedition (GOS), complemented with 1,246 metagenomes from the Human Microbiome Project (HMP) phase I and II. The dataset is described in Vanni et al. 2020.<br>Additional and more detailed information about the dataset creation and some of its applications, can be found at https://dark.metagenomics.eu/.Related to the agnostosDB is the agnostos-wf, a snakemake workflow stored in the GitHub repository https://github.com/functional-dark-side/agnostos-wf. The agnostos-wf allows to search the agnostosDB gene cluster HMM profiles and/or to integrate new sequence data (genes/contigs) in it.
DOI: 10.6084/m9.figshare.13336691.v2
title: Data of factors influencing non-adherence to opioids in cancer patients.xls

description: Factors influencing non-adherence to opioids in cancer patients
DOI: 10.6084/m9.figshare.28647806.v1
title: Supplementary Material for: SKIN-PEDIC – a worldwide assessment of skin problems in children and adolescents using diabetes devices

description: Introduction: Children and adolescents with diabetes are increasingly using technological devices to maintain normoglycemia. However, skin problems associated with these devices are becoming a significant issue. This study aimed to investigate prevalence of skin issues in children and adoles-cents with diabetes globally and identify important factors associated with these skin problems. 
Methods: This multinational study involved 22 pediatric diabetes centers. Over a 4-week period, pseud anonymized data were collected on children and adolescents using diabetes devices, includ-ing demographic factors, visual skin problems, type of devices and products being used. Uni-variate logistic regression was applied to identify associations with skin problems. 
Results: A total of 1719 children and adolescents were included. Skin problems were present in 52% of pump users compared to 30% of sensor users. Eczema was found in 9% of participants at both insulin pump and glucose sensor sites, whereas scars, wounds and lipodystrophies were significant-ly more frequent at insulin pump sites than at glucose sensor sites. Skin characteristicsBoth xerosis cutis and keratosis pilaris were strongly associated with almost all types of skin problems, increasing the risk two to fivefold. 
Conclusion: Skin problems are a serious concern that limits the use of diabetes devices in children and adolescents, consequently increasing risk for long-term complications. This study highlights the extent of the problem in a real-world setting of unselected participants despite the use of preven-tive strategies. Consequently, the development of more skin-friendly devices is needed to ensure that all children and adolescents with diabetes can effectively use these devices in the long term.
DOI: 10.6084/m9.figshare.5127946.v1
title: Supplementary Material for: NextGen Brain Microdialysis: Applying Modern Metabolomics Technology to the Analysis of Extracellular Fluid in the Central Nervous System

description: Microdialysis is a powerful method for in vivo neurochemical analyses. It allows fluid sampling in a dynamic manner in specific brain regions over an extended period of time. A particular focus has been the neurochemical analysis of extracellular fluids to explore central nervous system functions. Brain microdialysis recovers neurotransmitters, low-molecular-weight neuromodulators and neuropeptides of special interest when studying behavior and drug effects. Other small molecules, such as central metabolites, are typically not assessed despite their potential to yield important information related to brain metabolism and activity in selected brain regions. We have implemented a liquid chromatography online mass spectrometry metabolomics platform for an expanded analysis of mouse brain microdialysates. The method is sensitive and delivers information for a far greater number of analytes than commonly used electrochemical and fluorescent detection or biochemical assays. The metabolomics platform was applied to the analysis of microdialysates in a foot shock-induced mouse model of posttraumatic stress disorder (PTSD). The rich metabolite data information was then used to delineate affected prefrontal molecular pathways that reflect individual susceptibility for developing PTSD-like symptoms. We demonstrate that hypothesis-free metabolomics can be adapted to the analysis of microdialysates for the discovery of small molecules with functional significance.
DOI: 10.6084/m9.figshare.8127536.v1
title: Zoning for edaphoclimatic aptitude of Bambusa vulgaris and Dendrocalamus giganteus in Brazil

description: ABSTRACT The use of renewable materials and more sustainable processes are essential to minimize the negative impacts of population growth. Bamboo is a viable alternative, because it is a product with potential properties for wood replacement. However, to achieve a good yield, it is necessary to identify suitable sites for the forestry of the species. This study aimed to forecast favorable areas for the best establishment and development of Bambusa vulgaris and Dendrocalamus giganteus in the Brazilian territory, functioning as a zoning for edaphoclimatic aptitude that can support decision-making. It was performed using georeferenced points of natural occurrence for the species, collected from a virtual herbarium. The environmental variables were extracted from the WorldClim, MOD16 and SoilGrids databases. In order to select the set of variables to be used for modeling each species, a correlation test was performed. From this result, ten environmental variables were used for each species, and non-correlated variables were chosen. A principal component analyses was applied to select the variables that better explained variability. For the distribution map, the Maxent algorithm was used, based on the principle of maximum entropy, evaluated by the AUC and TSS metrics. Bambusa vulgaris presents a large area for adaptation in the Brazilian territory, unlike the Dendrocalamus giganteus species, which showed a limited aptitude area.
DOI: 10.6084/m9.figshare.14724684.v2
title: Genome-wide reconstruction of rediploidization following autopolyploidization across one hundred million years of salmonid evolution

description: AORe_concatenated_alignments - all AORe alignments used for MCMCtree<br>Supplementary_data_description.txt - description of supplementary datasets 1-20<br>Supplementary Data 1-20: Excel datasheets<br><br>dnds_alignments_trees.zip - all alignments and trees used in dn/ds analysis<br><br>aore_alignments_trees.zip - Supplementary data 7 : alignments and trees from AORe region<br><br>SSR_alignments_trees.zip - Supplementary data 7 : alignments and trees from SSR region<br><br>SSR_concatenated_alignments.zip - all SSR alignments used for MCMCtree<br><br>
DOI: 10.25381/cput.7712360.v1
title: Figures of the numerical analysis of the hydrodynamic mixing characteristics of a rectangular versus a cylindrical mixing crystallizer tank for a membrane distillation apparatus using Ansys Fluent CFD implementation of the Eulerian granular multiphase model

description: The CFD cross-sections from the simulations were extracted from two positions. The CFD data needed for the comparison to the experiment were taken at the outer wall of the model to match the perspective of the video. The second position used in the CFD comparison of a rectangular versus a cylindrical tank were at the center of the impeller where the dynamics were most clear. The zero point was at the center of the 3D models, where X=0, Y=0 and Z=0. The figure names contain the location at which the cross-sections was taken from, the relevant model, i.e. turbulent dissipation rate, turbulent kinetic energy, velocity magnitude, velocity vectors, solids suspension in terms of volume fraction (VF), 3D volume fraction renderings and the rotational velocity in terms of revolutions per minute (RPM). The superimposed data figures names contain the VF that indicates the CFD function volume fraction, the rotational velocity (RPM), the time interval in seconds and SI to show the data was superimposed
DOI: 10.6084/m9.figshare.26721366.v1
title: Additional file 2 of Sensory nerve conduction stimulus threshold measurements of the infraorbital nerve and its applicability as a diagnostic tool in horses with trigeminal-mediated headshaking

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.1281094.v1
title: Quizoola24 Twitter Capture

description: Performance of "Quizoola24!" by Forced Entertainment, 22 Nov 2014, Millenium Muesum, Sheffield. Raw tweets captured over the period 21 Nov - 23 Nov 2014, filtered using the hashtags #quizoola24 and #quizoola
DOI: 10.6084/m9.figshare.27895014.v1
title: <b>AI Generative Tool Usage, Shared Metacognition and English Writing Capabilities Among Second Language Learners</b>

description: <b>Investigating the Interplay Between AI Generative Tool Usage, Shared Metacognition and English Writing Capabilities Among Second Language Learners</b>
DOI: 10.6084/m9.figshare.2067984
title: A crystalline bisindolylmaleimide with strong solid-state fluorescence of red color and its analogous cross-linked polymer without fluorescence

description: A crystalline bisindolylmaleimide (BIM) <b>3</b> with strong fluorescence in the solid state was prepared and studied. Its analogous cross-linked polymer <b>4</b> with the same BIMs fluorophore was designed and characterized. The investigation of the covalent bonding networking effect on the solid-state fluorescence was carried out by the comparison between <b>3</b> and <b>4</b>.
DOI: 10.6084/m9.figshare.20390523.v4
title: HHU-IPM GRACE terrestrial water storage anomaly data sets using an improved point mass solution

description: The data sets contain the GRACE monthly terrestrial water storage anomaly (TWSA) grids based on the improved point mass (IPM) solution at Hohai University (HHU). The HHU-IPM-GRACE records for monthly TWSA values are in mm of equivalent water height for the reference period April 2002 to May 2022 in the form of a NetCDF file. They are anomalies regarding the period from January 2004 to December 2009. The data sets are provided at a spatial partitioning of 0.25-by-0.25 arc-degrees. (The resolution is still GRACE’s native resolution which is 300-400 km.) The variables within the file ‘HHU_IPM_GRACE_TWS_200204_202205_v04.nc’ are ‘lat’ (latitude), ‘lon’ (longitude), ‘tws’ (terrestrial water storage), and ‘time’. Latitudes and longitudes are respectively 720-by-1 and 1440-by-1 vectors in arc-degrees (decimal) north and east, respectively, and the values refer to the cells' center. The TWS is a 1440-by-720-by-209 matrix, where the rows refer to the longitudes, the columns refer to latitudes, and the pages refer to the epochs (209 monthly solutions). Time is a 209-by-1 vector containing the number of days since January 1, 2002. A MATLAB code ‘read_hhu_ipm_tws.m’ is available for extracting the results and plotting the first month. Alternatively, the variables can be displayed in Panoply Data Viewer, available at https://www.giss.nasa.gov/tools/panoply/ or a Linux-based command ncview.
DOI: 10.6084/m9.figshare.28457516.v1
title: The health impacts and genetic architecture of food liking in cardio-metabolic diseases

description: This file contain all the codes and datasets used in producing the Figures in the manuscript entitled 'The health impacts and genetic architecture of food liking in cardio-metabolic diseases'
DOI: 10.6084/m9.figshare.14705526.v1
title: Supplementary Material for: Diversity in Starvation Survival Strategies and Outcomes among Heterotrophic Proteobacteria

description: Heterotrophic Proteobacteria are versatile opportunists that have been extensively studied as model organisms in the laboratory, as both pathogens and beneficial symbionts of plants and animals, and as ubiquitous organisms found free-living in many environments. Succeeding in these niches requires an ability to persist for potentially long periods of time in growth-arrested states when essential nutrients become limiting. The tendency of these bacteria to grow in dense biofilm communities frequently leads to the development of steep nutrient gradients and deprivation of interior cells even when the environment is nutrient rich. Surviving within host environments also likely requires tolerating growth arrest due to the host limiting access to nutrients and transitioning between hosts may require a period of survival in a nutrient-poor environment. Interventions to maximise plant-beneficial activities and minimise infections by bacteria will require a better understanding of metabolic and regulatory networks that contribute to starvation survival, and how these networks function in diverse organisms. Here we focus on carbon starvation as a growth-arresting condition that limits availability not only of substrates for biosynthesis but also of energy for ongoing maintenance of the electrochemical gradient across the cell envelope and cellular integrity. We first review models for studying bacterial starvation and known strategies that contribute to starvation survival<i>.</i> We then present the results of a survey of carbon starvation survival strategies and outcomes in ten bacterial strains, including representatives from the orders Enterobacterales and Pseudomonadales (both Gammaproteobacteria) and Burkholderiales (Betaproteobacteria). Finally, we examine differences in gene content between the highest and lowest survivors to identify metabolic and regulatory adaptations that may contribute to differences in starvation survival.
DOI: 10.6084/m9.figshare.21563754.v2
title: Annotation files of deep-sea anemone Actinernus sp. genome

description: Annotation files.
DOI: 10.6084/m9.figshare.7126949.v1
title: Wide-Field Eye Model.zip

description: Zemax file of eye model and sgrin.dat (copy to .../my documents/zemax/GLASSCAT)
DOI: 10.6084/m9.figshare.22817252.v1
title: Data for: Hydroclimatic extremes contribute to asymmetric trends in ecosystem productivity loss

description: Data for: Hydroclimatic extremes contribute to asymmetric trends in ecosystem productivity loss
DOI: 10.15468/dl.dsr5h7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia innesi (Fowler, 1934)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((45.6579 11.3446,44.9648 11.0757,44.9648 10.8496,51.6539 10.8496,51.6211 10.9131,51.7357 12.0497,51.4872 12.2937,50.7681 12.4846,50.3292 12.3424,50.0295 12.0332,49.0651 11.773,47.2785 11.6543,46.4751 11.2145,45.6579 11.3446))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013484-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.25002596.v2
title: Common waxbill morphological and physiological data Portugal 2021 - 2022

description: Physiological responses of the invasive common waxbill (<i>Estrilda astrild</i>) to varying ambient temperatures in Portugal. By examining body condition and mass-independent basal metabolic rate (BMR) during summer and autumn in two regions in Portugal, this research elucidates the species' strategies in response to temperature fluctuations.
DOI: 10.6084/m9.figshare.7718537.v1
title: Gene-RD-Provenance_V2

description: In this dataset we provide the second version of monogenic, rare diseases (OMIM identifier) with a known genetic cause (HGNC, Ensembl) supplemented with manually extracted provenance of both the disease and the discovery of the underlying genetic cause of the disease (PMID).
DOI: 10.6084/m9.figshare.21183997.v2
title: data

description: T1 contains Chinese version of the Foreign Language Enjoyment Scale (CFLES) to measure their past foreign language enjoyment (FLE) before their first college English class (T1), and their National College Entrance Examination scores two months before were a measurement of their past language achievement. T2 contains mean scores of their two latest exams to measure their current foreign language achievement. The same students filled in the same scale afterward to measure their current FLE.
DOI: 10.6084/m9.figshare.21437943.v1
title: INTERVIEW GUIDE FOR HIV-SERODISCORDANT COUPLES.docx

description: Interview guide for HIV-serodiscordant couples
DOI: 10.6084/m9.figshare.22691158.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.24785619.v1
title: Supplementary Material for: Exploring Patients' Perceptions on Injectable Opioid Agonist Treatment: Influences on Treatment-Initiation and Implications for Practice.

description: Introduction: Injectable opioid agonist treatment (iOAT) with diacetylmorphine is an effective option for individuals previously considered non-responsive to opioid substitution treatment. Despite implementation in Canada and several European countries, relatively few eligible people choose to initiate iOAT. To better understand what encourages or deters prospective patients from initiating iOAT, the current study explores patients´ perceptions on iOAT and how these influence therapy-initiation in practice. 
Methods: We conducted 34 semi-structured interviews with individuals currently in or eligible for iOAT in two German outpatient iOAT-clinics. Transcripts were analysed following qualitative content analysis, with development of inductive categories and use of consensual coding. For member checking, we consulted individuals with lived experiences prior to data collection and publication. 
Results: Participants based their choice to initiate iOAT on the perceived implications of the treatment on one´s daily life and individual recovery. Participants were encouraged to initiate iOAT due to the therapy´s perceived potential in reducing cravings and substance use, its positive health consequences, and due to the image of iOAT as a path towards abstinence. Regarding deterring perceptions, participants feared a profound impairment of daily life due to factors such as the daily visits to the clinic, were concerned about whether iOAT would sufficiently promote or even impede one´s recovery, and described negative health effects.
Conclusion: Perceptions found in this study profoundly influenced participants´ decisions on iOAT-enrolment and contextualise previous literature. The study reveals the dynamic coexistence of different perceptions about iOAT and sheds light on the inner-group stigmatisation of iOAT. Practitioners and future research should acknowledge the complexities found in the current study in order to exploit the full potential of effective treatment modalities such as iOAT.
DOI: 10.6084/m9.figshare.24270724.v2
title: <b>A multiplex nanopore sequencing approach for the detection of multiple arboviral species</b>

description: This repository contains R scripts, unedited gel electrophoresis images, and nucleotide sequence alignments used for the phylogenetic analysis performed for the publication of the study "<b>A multiplex nanopore sequencing approach for the detection of multiple arboviral species</b>" (Xavier et al., 2023).
DOI: 10.6084/m9.figshare.14057966.v3
title: Database with experimental information for Infrared thermal imaging monitoring on hands when performing repetitive tasks

description: This database has 39 cases of infrared thermal skin temperature in the hand fingers when repetitive work is performed to know which finger has a greater risk of injury, besides, the recovery time is analyzed regarding the initial temperature and its relationship with age, sex, weight, height if practice sports, and Body Mass Index (BMI) per individual. For the above, an experimental test was carried out for 10 minutes on a repetitive operation that takes place in the telecommunications industry and 39 subjects participated in which an infrared thermal image of the dorsal and palmar part of both hands was taken in periods of 5 minutes after the 10-minute test has elapsed.
DOI: 10.6084/m9.figshare.12939872.v1
title: Data_Products_Phobos_Asymmetric_Ion_Bombardment_MAVEN

description: This dataset contains the data produced in the article 'Implantation of Martian atmospheric ions within the regolith of Phobos'. The readme files in the dataset detail the content of each folder and file.<br>