cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11607734
title: Dataset and Code Package for Studying OSS Governance on GitHub

description: Introduction

This data and code package accompanies the research paper, providing all necessary scripts for replicating the study's findings and facilitating further exploration. The package includes a series of Python and R scripts, each designed to perform specific tasks in the data analysis process. Below is a detailed description of each file included in the package:

Usage Instructions

To replicate the study's results, users should run the scripts in the order provided. Each script is designed to build upon the previous one, ensuring a seamless data processing workflow. Detailed comments within each script offer further guidance on their specific functionalities and dependencies.

Dependencies



Python 3.12: Required for running the Python scripts.

R: Required for running the 11_effects_analysis.R script.

Python Libraries: pandas, numpy, nltk, and other standard libraries as specified in the scripts.

R Packages: dplyr, ggplot2, and other necessary packages as specified in the R script.


Dataset Description

Under gov_md_files

This folder contains markdown files related to governance documentation from various GitHub projects. Each file includes detailed governance rules and policies, which are analyzed to understand the evolution and impact of governance structures.

comment-list.csv

This file contains a list of comments extracted from the GitHub projects. Each entry includes details such as the comment text, author, date, and associated rule or issue, providing context for qualitative analysis.

governance-change-commit.csv

This file lists commits related to governance changes in the projects. Each entry includes commit metadata such as commit ID, author, date, and a brief description, allowing for tracking and analysis of governance modifications over time.

governance-change-content.csv

This file provides the content of governance changes associated with each commit. It includes the actual changes made to governance documentation, offering detailed insights into how governance rules evolve.

issue-list.csv

This file contains a list of issues reported in the GitHub projects. Each issue includes details such as issue ID, title, description, author, date, and status, enabling analysis of issues in relation to governance and rule changes.

repo-list.csv

This file lists the repositories included in the study. Each entry includes repository metadata such as repository name, owner, and other relevant information, serving as a reference for the scope of the analysis.

latest-governance-file-content.csv

This file contains the latest content of governance files from the projects. It captures the current state of governance rules and policies, providing a snapshot for comparison with historical data.
DOI: 10.15468/dl.c4rsgv
title: Occurrence Download

description: A dataset containing 488 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Danae racemosa (L.) Moench)"
 ]
}

 The dataset includes 488 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070796-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/df5ed6c0-3ce6-4f38-9493-6a2426d3f6d7
title: Supplementary material Chapter 3 of PhD thesis: "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"

description: PhD thesis "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"; Chapter 3 "Live-cell imaging reveals the trade-off between target search flexibility and efficiency for Cas9 and Cas12a "; Supplementary Material. Contains supplementary tables and the source data used to generate the figures in the main text.
DOI: 10.4121/df5ed6c0-3ce6-4f38-9493-6a2426d3f6d7.v2
title: Supplementary material Chapter 3 of PhD thesis: "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"

description: PhD thesis "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"; Chapter 3 "Live-cell imaging reveals the trade-off between target search flexibility and efficiency for Cas9 and Cas12a "; Supplementary Material. Contains supplementary tables and the source data used to generate the figures in the main text.
DOI: 10.4121/56e91fd7-80f0-4be7-b00c-d68be375675e
title: Supplementary material Chapter 4 of PhD thesis: "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"

description: PhD thesis "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"; Chapter 4 "The impact of DnaA titration on <em>Escherichia coli </em>DNA replication initiation elucidated through live-cell single-particle tracking"; Supplementary Material. Contains supplementary tables, figures and the source data used to generate the figures in the main text.
DOI: 10.4121/56e91fd7-80f0-4be7-b00c-d68be375675e.v3
title: Supplementary material Chapter 4 of PhD thesis: "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"

description: PhD thesis "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"; Chapter 4 "The impact of DnaA titration on <em>Escherichia coli </em>DNA replication initiation elucidated through live-cell single-particle tracking"; Supplementary Material. Contains supplementary tables, figures and the source data used to generate the figures in the main text.
DOI: 10.5517/ccdc.csd.cc2jdhxc
title: CCDC 2335723: Experimental Crystal Structure Determination

description: Related Article: Fei Zeng, Lin-Li Tang, Wen-Hu Bao, Ying-Zi Tan|2024|Org.Chem.Front.|11|3404|doi:10.1039/D4QO00407H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.verxyg
title: Occurrence Download

description: A dataset containing 1931 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hypsirhynchus Günther, 1858"
 ]
}

 The dataset includes 1931 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070797-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/27ceca49-75c0-49a4-a17d-8c6de4074709
title: Supplementary material Chapter 5 of PhD thesis: "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"

description: PhD thesis "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"; Chapter 5 "A synthetic, homeostatic genetic circuit enables titration-based control of DNA replication initiation in <em>Escherichia coli</em>"; Supplementary Material. Contains supplementary tables, figures and the source data used to generate the figures in the main text.
DOI: 10.4121/27ceca49-75c0-49a4-a17d-8c6de4074709.v3
title: Supplementary material Chapter 5 of PhD thesis: "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"

description: PhD thesis "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"; Chapter 5 "A synthetic, homeostatic genetic circuit enables titration-based control of DNA replication initiation in <em>Escherichia coli</em>"; Supplementary Material. Contains supplementary tables, figures and the source data used to generate the figures in the main text.
DOI: 10.15468/dl.ab3cdm
title: Occurrence Download

description: A dataset containing 670 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Sri Lanka",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Elephas maximus Linnaeus, 1758",
 "Year 1311-2024"
 ]
}

 The dataset includes 670 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070798-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5xfa7u
title: Occurrence Download

description: A dataset containing 183 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Anoplolepis gracilipes (Smith, 1857)"
 ]
}

 The dataset includes 183 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070799-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.avcvxn
title: Occurrence Download

description: A dataset containing 4167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cerambycidae)",
 "Geometry POLYGON ((4.867704 59.29714, 5.666733 58.55017, 6.6377 58.0665, 7.052525 57.97976, 7.387226 57.9918, 7.66716 58.01276, 7.972365 58.05951, 8.201825 58.11338, 8.24238 58.1251, 10.40638 59.05367, 10.52926 59.31589, 10.49298 59.44462, 10.31966 59.65893, 8.769042 60.17001, 8.132347 60.18563, 7.646001 60.12685, 7.488262 60.09893, 5.594145 59.68508, 5.222177 59.50169, 4.879618 59.31857, 4.867704 59.29714))",
 "CoordinateUncertaintyInMeters is less than or equal to 100"
 ]
}

 The dataset includes 4167 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070801-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qup3k7
title: Occurrence Download

description: A dataset containing 3009 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Camponotus maculatus (Fabricius, 1782)"
 ]
}

 The dataset includes 3009 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070802-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hquwmf
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Arrhyton Günther, 1858"
 ]
}

 The dataset includes 137 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070803-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25911/mfab-fp13
title: Dataset for 'Finding and identifying platinum group elements in the Eastman layered mafic intrusion'

description: Dataset with sample description, EPMA, and ICP analysis results for PGE distribution for Eastman intrusives
description: Compositional analysis was carried out using a JEOL 8530F Plus EPMA, equipped with 5 wavelength dispersive spectroscopy (WDS) detectors. Full WDS spectrometer analyses were acquired using 15 kV acceleration voltage, 300 nA current, and 3 µm probe diameter. Point analyses were carried out at 10 nA current and 1 µm probe diameter. For sulfides, PGE were acquired for 160 seconds on peak, whereas all other elements were acquired for 20 seconds on peak. For PGM, PGE were acquired for 90 seconds on peak, whereas other elements were acquired for 20 seconds on peak. Background acquisition times were half of peak counting durations.
Base metal sulfides (BMS) were analysed using LA-ICP-MS. The analyses were conducted using an Agilent 7700 ICP-MS system with a 193 nm Excimer laser system. Repetition rate was 10 Hz and spot size was 13 µm. Isotopes measured were 107Ag, 27Al, 197Au, 209Bi, 43Ca, 44Ca, 59Co, 52Cr, 63Cu, 57Fe, 193Ir, 24Mg, 55Mn, 60Ni, 189Os, 105Pd, 206Pb, 207Pb, 208Pb, 195Pt, 103Rh, 101Ru, 34S, 121Sb, 77Se, 78Se, 82Se, 28Si, 125Te, 47Ti, 90Zr. Data processing was carried out with Iolite v4.8.6 (Paton et al., 2011), and procedures of detection limits by Longerich et al. (1996). This method samples a volume that penetrates to a depth of about 10 μm below the surface.
DOI: 10.5281/zenodo.11608338
title: "NASOIH AL-KIBAR" OR TIPS OF ZAMAKHSHARI
DOI: 10.5281/zenodo.11608337
title: "NASOIH AL-KIBAR" OR TIPS OF ZAMAKHSHARI
DOI: 10.15468/dl.3tgsxg
title: Occurrence Download

description: A dataset containing 2111 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Corythucha arcuata (Say, 1832)"
 ]
}

 The dataset includes 2111 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070804-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4gp9ed
title: Occurrence Download

description: A dataset containing 689668 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Regulus ignicapilla (Temminck, 1820))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 689668 records from 3219 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070790-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4dh6df
title: Occurrence Download

description: A dataset containing 5119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sphenisciformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-180 -90,-150 -90,-150 -60,-180 -60,-180 -90))"
 ]
}

 The dataset includes 5119 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061803-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111325791
title: Codex Climaci Rescriptus: Ladder of Ascent by John Climacus, MS.000149.1-.86

description: [Text Description:] Codex Climaci Rescriptus: Syriac translation of Ladder of Divine Ascent by John Climacus, upper text ❧ [Text or Publication Number Note:] MS.000149.1-.86 ❧ [Excavation Description:] Found at St. Catherine's Monastery ❧ [Medium:] Parchment ❧ [Script Note:] Syriac ❧ [Physical Object Description:] 137 folios; 9.06 x 14.56 in. (23 x 37 cm); vellum with ink ❧ [Physical Object Note:] Palimpsest
DOI: 10.15468/dl.mn827s
title: Occurrence Download

description: A dataset containing 908 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Casimiroa edulis La Llave & Lex."
 ]
}

 The dataset includes 908 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062137-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nyp5ep
title: Occurrence Download

description: A dataset containing 2435 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-2.38516 39.28385,0.94768 39.28385,0.94768 43.49762,-2.38516 43.49762,-2.38516 39.28385))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Parnassius apollo (Linnaeus, 1758)"
 ]
}

 The dataset includes 2435 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0213429-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xups3e
title: Occurrence Download

description: A dataset containing 330 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pyrrhura devillei (Massena & Souance, 1854)"
 ]
}

 The dataset includes 330 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063590-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111325794
title: Codex Climaci Rescriptus: Ladder of Ascent by John Climacus, MS.000149.1-.86

description: [Text Description:] Codex Climaci Rescriptus: Syriac translation of Ladder of Divine Ascent by John Climacus, upper text ❧ [Text or Publication Number Note:] MS.000149.1-.86 ❧ [Excavation Description:] Found at St. Catherine's Monastery ❧ [Medium:] Parchment ❧ [Script Note:] Syriac ❧ [Physical Object Description:] 137 folios; 9.06 x 14.56 in. (23 x 37 cm); vellum with ink ❧ [Physical Object Note:] Palimpsest
DOI: 10.15468/dl.96zree
title: Occurrence Download

description: A dataset containing 302 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Illicium verum Hook.fil."
 ]
}

 The dataset includes 302 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065211-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tbye53
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-10.43860 7.13922,156.43860 7.13922,156.43860 73.86078,-10.43860 73.86078,-10.43860 7.13922))",
 "HasCoordinate is true",
 "TaxonKey is Artemisia sacrorum Ledeb. ex Hook.f., 1881",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 1 records were derived from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003754-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3sw7f
title: Occurrence Download

description: A dataset containing 12561 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Leratiomyces ceres (Cooke & Massee) Spooner & Bridge)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12561 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064584-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111330134
title: Latin Bible with Illuminations, MS.000158

description: [Text Description:] Latin Bible with Illuminations and Marginal Notes ❧ [Text or Publication Number Note:] MS.000158 ❧ [Medium:] Parchment ❧ [Script Note:] Gothic ❧ [Physical Object Description:] Folios approx. 15.7 x 24.5 cm. Two columns. ❧ [Physical Object Note:] Vellum with ink, red and black ❧ [Physical Object Note:] Illuminations, marginal notations, headings at top.
DOI: 10.15468/dl.amd5d9
title: Occurrence Download

description: A dataset containing 11337 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Helianthus annuus L., Cirsium andersonii (A.Gray) Petr.)",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1990"
 ]
}

 The dataset includes 11337 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0215679-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pkeb5k
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fordia stipularis (Prain) Dunn"
 ]
}

 The dataset includes 16 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063609-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111325802
title: Codex Climaci Rescriptus: Ladder of Ascent by John Climacus, MS.000149.1-.86

description: [Text Description:] Codex Climaci Rescriptus: Syriac translation of Ladder of Divine Ascent by John Climacus, upper text ❧ [Text or Publication Number Note:] MS.000149.1-.86 ❧ [Excavation Description:] Found at St. Catherine's Monastery ❧ [Medium:] Parchment ❧ [Script Note:] Syriac ❧ [Physical Object Description:] 137 folios; 9.06 x 14.56 in. (23 x 37 cm); vellum with ink ❧ [Physical Object Note:] Palimpsest
DOI: 10.15468/dl.5n9s2c
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Isoetes sinensis T.C.Palmer"
 ]
}

 The dataset includes 12 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0195195-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nuu9rt
title: Occurrence Download

description: A dataset containing 215 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Swedish Bird Survey: Fixed routes (Standardrutterna)",
 "Year 2000-2018",
 "TaxonKey is Locustella naevia (Boddaert, 1783)"
 ]
}

 The dataset includes 215 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062145-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8x3adx
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pseudoeurycea altamontana (Taylor, 1939)"
 ]
}

 The dataset includes 105 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0201979-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111332755
title: "Wyman Fragment" (Uncial 0220), Uncial 0220

description: [Text Description:] "Wyman Fragment" (Uncial 0220), Romans 4:23–5:3; 5:8–13 in Greek ❧ [Text or Publication Number Note:] Uncial 0220; MS.000566 ❧ [Medium:] Parchment ❧ [Script Note:] Greek ❧ [Physical Object Description:] A fragmentary vellum leaf with ink. ❧ [Physical Object Note:] 3.2 x 4.3 in. (8.1 x 11 cm)
DOI: 10.15468/dl.5zteby
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crudia ripicola de Wit"
 ]
}

 The dataset includes 16 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063598-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111332707
title: "Wyman Fragment" (Uncial 0220), Uncial 0220

description: [Text Description:] "Wyman Fragment" (Uncial 0220), Romans 4:23–5:3; 5:8–13 in Greek ❧ [Text or Publication Number Note:] Uncial 0220; MS.000566 ❧ [Medium:] Parchment ❧ [Script Note:] Greek ❧ [Physical Object Description:] A fragmentary vellum leaf with ink. ❧ [Physical Object Note:] 3.2 x 4.3 in. (8.1 x 11 cm)