cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11791386.v1
title: Among cradles and museums: seasonally dry forest promotes lineage exchanges between rain forest and savanna

description: <b>Background</b>: Cerrado comprises heterogeneous vegetation types. The flora of the vegetation types has distinct biogeographic origins and thus can be hypothesised to have distinct evolutionary imprints. <b>Aims</b>: We hypothesised that the flora of riparian forest was phylogenetically overdispersed, whereas those of more open habitats were phylogenetically clustered. <b>Methods</b>: We built a species-level phylogeny for 1,663 species of trees, shrubs and palms and analysed the pattern of lineage distribution, alpha and beta phylogenetic diversity among Cerrado vegetation types (riparian forest, rocky savana, savana and seasonally dry forest - SDTF). <b>Results</b>: We found a gradient of high phylogenetic diversity and overdispersion from riparian forests towards phylogenetic clustering in vegetation in more open and drier habitats. Habitat shifts were common along the evolutionary history of all families analysed and most families showed a high frequency of shifts from SDTF to riparian forest and savanna. <b>Conclusions</b>: SDTF seems to be a transitional habitat in evolutionary terms, promoting lineage exchanges between stands of riparian forest and savanna. While riparian forest can be seen as a ‘museum’, that harbours ancient lineages, savanna and rocky savanna are a ‘cradle’ of derived lineages. Habitat shifts are an important underlying drive of high present-day Cerrado flora diversity.
DOI: 10.6084/m9.figshare.11791398.v1
title: Dispersible chitosan particles showing bacteriostatic effect against <i>Streptococcus mutans</i> and their dental polishing effect

description: Nontoxic and biodegradable chitosan is potentially useful in various applications. We prepared submicron chitosan particles with high dispersibility in aqueous solution utilizing the electrostatic interaction phase separation method described in a previous report, but using citric acid as the polyvalent anionic compound instead of sodium sulfate. The submicron chitosan particles showed significant antibacterial activity and anti-adhesive action against <i>Streptococcus mutans</i>, even at around neutral pH. However, chitosan granules showed no antibacterial activity under the same conditions. The addition of the chitosan particles to dental polishing paste provided stainless steel discs (the same hardness as dental enamel) with a smoother surface than polishing paste without additives. In view of their submicron size and antibacterial activity, chitosan particles could potentially be multifunctional components of oral and dental cleaning materials. Dispersible chitosan particles (DCPs) −1.0; 1.0 equivalents of citric acid carboxy groups relative to chitosan amino groups.
DOI: 10.6084/m9.figshare.11791407.v1
title: Physicochemical Characteristics of Sandstone Media

description: This data set contains the measured values of the physicochemcial rock properties of a deltaic formation in Germany that was sampled in the complete quarry area as well as by two rock cubes (OSB1_c and OSB2_c). Provided is a measurement series on rock plugs extracted from both rock cubes as well as on plugs extracted from the outcrop wall directly. Also, we provide a series of geochemical measurements conducted on all faces of both rock cubes. All samples are referenced in a local coordinate system. The origin of the relative coordinate system is a point in the quarry.
DOI: 10.6084/m9.figshare.11791335
title: Teleogryllus occipitalis genome

description: Asian Edible cricket <i>Teleogryllus occipitalis</i> genome
DOI: 10.23644/uu.11791329
title: prelim_evaluation.zip

description: Evaluation files from the master Thesis: <br>http://geographicknowledge.de/pdf/Thesis Rogier Meerlo 16-08-2019.pdf<br>
DOI: 10.6084/m9.figshare.11791326
title: HiD_GenomeBiology2020_RawData_U2OS_SiR_DNA_TimeIntervals

description: Used in Figure 2 of the publication.
DOI: 10.23644/uu.11791329.v1
title: prelim_evaluation.zip

description: Evaluation files from the master Thesis: <br>http://geographicknowledge.de/pdf/Thesis Rogier Meerlo 16-08-2019.pdf<br>
DOI: 10.6084/m9.figshare.11791323
title: Metadata record for: Thirty complete Streptomyces genome sequences for mining novel secondary metabolite biosynthetic gene clusters

description: This dataset contains key characteristics about the data described in the Data Descriptor Thirty complete Streptomyces genome sequences for mining novel secondary metabolite biosynthetic gene clusters. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <b><br> </b>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11791326.v1
title: HiD_GenomeBiology2020_RawData_U2OS_SiR_DNA_TimeIntervals

description: Used in Figure 2 of the publication.
DOI: 10.6084/m9.figshare.11791314
title: HiD_GenomeBiology2020_RawData_U2OS_Rpb1_Dendra2

description: Used in Figure 4 of the publication.
DOI: 10.6084/m9.figshare.11791317
title: HiD_GenomeBiology2020_RawData_MCF7_SiR_DNA.rar

description: Used in Figure S11 of the publication.
DOI: 10.6084/m9.figshare.11791314.v1
title: HiD_GenomeBiology2020_RawData_U2OS_Rpb1_Dendra2

description: Used in Figure 4 of the publication.
DOI: 10.6084/m9.figshare.11791317.v1
title: HiD_GenomeBiology2020_RawData_MCF7_SiR_DNA.rar

description: Used in Figure S11 of the publication.
DOI: 10.6084/m9.figshare.11791323.v1
title: Metadata record for: Thirty complete Streptomyces genome sequences for mining novel secondary metabolite biosynthetic gene clusters

description: This dataset contains key characteristics about the data described in the Data Descriptor Thirty complete Streptomyces genome sequences for mining novel secondary metabolite biosynthetic gene clusters. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.11791323.v2
title: Metadata record for: Thirty complete Streptomyces genome sequences for mining novel secondary metabolite biosynthetic gene clusters

description: This dataset contains key characteristics about the data described in the Data Descriptor Thirty complete Streptomyces genome sequences for mining novel secondary metabolite biosynthetic gene clusters. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <b><br> </b>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11791305
title: RAW DATA (Drought resistance does not explain epiphytic abundance of accidental epiphytes)

description: This file contains all raw data of the article:<br>Drought resistance does not explain epiphytic abundance of accidental epiphytes<br>Vincent Hoeber, Moritz Klinghardt and Gerhard Zotz<br>Plant Ecology and Diversity 2020https://doi.org/10.1080/17550874.2020.1729888<br><br><br><br>
DOI: 10.6084/m9.figshare.11791221
title: Parameters of the two-area system.pdf

description: This is the Supplementary Materials for a journal paper.
DOI: 10.6084/m9.figshare.11791185
title: Raw Data.xlsx

description: Excel file contains the raw data (firefly and <i>Renilla </i>luciferase ratios or nanoluciferase and firefly luciferase ratios) that was analysed for each experiment.Each data set has three independent transfections.Graphs were produced with GraphPad Prism v.8.1.2.In the experiments using CHIKV-luciferase, firefly luciferase (Fluc) activity was normalised against <i>Renilla </i>luciferase activity to correct for transfection efficiency in each well (FF/RL). In the experiments with the CHIKV split replicon system, the nanoluciferase activity was normalized against Fluc activity (NL/FF). The FF/RL or NL/FF ratios were analysed with R (version 3.6.1).<br>
DOI: 10.6084/m9.figshare.11791185.v1
title: Raw Data.xlsx

description: Excel file contains the raw data (firefly and <i>Renilla </i>luciferase ratios or nanoluciferase and firefly luciferase ratios) that was analysed for each experiment.Each data set has three independent transfections.Graphs were produced with GraphPad Prism v.8.1.2.In the experiments using CHIKV-luciferase, firefly luciferase (Fluc) activity was normalised against <i>Renilla </i>luciferase activity to correct for transfection efficiency in each well (FF/RL). In the experiments with the CHIKV split replicon system, the nanoluciferase activity was normalized against Fluc activity (NL/FF). The FF/RL or NL/FF ratios were analysed with R (version 3.6.1).<br>
DOI: 10.6084/m9.figshare.11791221.v1
title: R1_Supplementary Materials.pdf

description: This is the Supplementary Materials for a journal paper.
DOI: 10.6084/m9.figshare.11791176
title: Impact of context on implementation fidelity of the ICDM model

description: Interviews with healthcare workers on their perceptions of factors that affect implementation fidelity of the integrated chronic disease management model
DOI: 10.6084/m9.figshare.11791221.v3
title: Parameters of the two-area system.pdf

description: This is the Supplementary Materials for a journal paper.
DOI: 10.6084/m9.figshare.11791221.v2
title: R1_Supplementary Materials.pdf

description: This is the Supplementary Materials for a journal paper.
DOI: 10.6084/m9.figshare.11791137
title: Spatial and temporal <sup>2</sup>H and <sup>18</sup>O isotope variation of contemporary precipitation in the Bale Mountains, Ethiopia<sup>*</sup>

description: East Africa is an underrepresented region in respect of monitoring the stable isotopic composition of precipitation (δ<sup>18</sup>O<sub>prec</sub> and δ<sup>2</sup>H<sub>prec</sub>). In 2017, we collected precipitation samples from ten weather stations located along an altitudinal transect ranging from 1304 to 4375 m a.s.l. The δ<sup>18</sup>O<sub>prec</sub> and δ<sup>2</sup>H<sub>prec</sub> values varied from –8.7 to +3.7 ‰ and –38 to +29 ‰, respectively. The local meteoric water line is characterised by a lower slope, a higher intercept and more positive <i>d</i>-excess values (δ<sup>2</sup>H = 5.3 ± 0.2 * δ<sup>18</sup>O + 14.9 ± 0.9) compared to the global meteoric water line. Both altitude and amount of precipitation clearly correlate with our isotope data. However, the δ<sup>18</sup>O<sub>prec</sub> and δ<sup>2</sup>H<sub>prec</sub> values show at the same time a seasonal pattern reflecting rainy versus dry season. More enriched isotope values prevailed shortly after the end of the dry season; more depleted isotope values coincided with high precipitation amounts recorded in May, August and September. Moreover, HYSPLIT trajectories reveal that during the dry season water vapour originates primarily from the Arabian Sea, whereas during the wet season it originates primarily from the Southern Indian Ocean. These findings challenge the traditional amount effect interpretation of paleoclimate isotope records from East Africa and rather point to a previously underestimated source effect.
DOI: 10.6084/m9.figshare.11791137.v1
title: Spatial and temporal <sup>2</sup>H and <sup>18</sup>O isotope variation of contemporary precipitation in the Bale Mountains, Ethiopia<sup>*</sup>

description: East Africa is an underrepresented region in respect of monitoring the stable isotopic composition of precipitation (δ<sup>18</sup>O<sub>prec</sub> and δ<sup>2</sup>H<sub>prec</sub>). In 2017, we collected precipitation samples from ten weather stations located along an altitudinal transect ranging from 1304 to 4375 m a.s.l. The δ<sup>18</sup>O<sub>prec</sub> and δ<sup>2</sup>H<sub>prec</sub> values varied from –8.7 to +3.7 ‰ and –38 to +29 ‰, respectively. The local meteoric water line is characterised by a lower slope, a higher intercept and more positive <i>d</i>-excess values (δ<sup>2</sup>H = 5.3 ± 0.2 * δ<sup>18</sup>O + 14.9 ± 0.9) compared to the global meteoric water line. Both altitude and amount of precipitation clearly correlate with our isotope data. However, the δ<sup>18</sup>O<sub>prec</sub> and δ<sup>2</sup>H<sub>prec</sub> values show at the same time a seasonal pattern reflecting rainy versus dry season. More enriched isotope values prevailed shortly after the end of the dry season; more depleted isotope values coincided with high precipitation amounts recorded in May, August and September. Moreover, HYSPLIT trajectories reveal that during the dry season water vapour originates primarily from the Arabian Sea, whereas during the wet season it originates primarily from the Southern Indian Ocean. These findings challenge the traditional amount effect interpretation of paleoclimate isotope records from East Africa and rather point to a previously underestimated source effect.
DOI: 10.6084/m9.figshare.11791071
title: An equation of state for insect swarms

description: This dataset contains the data used in "An equation of state for insect swarms" by the same authors. It contains midge tracking data for various dynamic perturbations. The data contains identities, positions, and velocities for all midges in the swarm.
DOI: 10.6084/m9.figshare.11791059
title: Career citation impact for the USA

description: Citation impact trajectories for US researcher careers. Taken from the paper, "All downhill from the PhD? The typical impact trajectory of US academic careers"
DOI: 10.6084/m9.figshare.11791059.v1
title: Career citation impact for the USA

description: Citation impact trajectories for US researcher careers. Taken from the paper, "All downhill from the PhD? The typical impact trajectory of US academic careers"
DOI: 10.6084/m9.figshare.11790987
title: Using a coalescent approach to assess gene flow and effective population size of Acrocomia aculeata (Jacq.) Lodd. Ex Mart. in the Brazilian Atlantic Forest

description: This file contains the genotype data of four subpopulations of <em>A. aculeata</em> (microsatellites loci).
DOI: 10.6084/m9.figshare.11790981
title: Suppl. Table for JAP

description: Effects of vehicle on cardiorespiratory pattern and tongue muscle activity
DOI: 10.6084/m9.figshare.11790987.v1
title: Using a coalescent approach to assess gene flow and effective population size of Acrocomia aculeata (Jacq.) Lodd. Ex Mart. in the Brazilian Atlantic Forest

description: This file contains the genotype data of four subpopulations of <em>A. aculeata</em> (microsatellites loci).
DOI: 10.6084/m9.figshare.11790981.v1
title: Suppl. Table for JAP

description: Effects of vehicle on cardiorespiratory pattern and tongue muscle activity
DOI: 10.6084/m9.figshare.11790957
title: Data analysis code from Commodity-specific punishment for experimentally induced defection in cooperatively breeding fish

description: R code for reproducing results and figures from the provided dataset.
DOI: 10.6084/m9.figshare.11790957.v1
title: Data from Commodity-specific punishment for experimentally induced defection in cooperatively breeding fish

description: The complete dataset used in this article in csv format, to be read by the provided R code.
DOI: 10.6084/m9.figshare.11790957.v2
title: Data analysis code from Commodity-specific punishment for experimentally induced defection in cooperatively breeding fish

description: R code for reproducing results and figures from the provided dataset.
DOI: 10.6084/m9.figshare.11790933
title: Acronyms file from Optical spatial modulation design

description: Visible light communication (VLC) systems are inherently signal-to-noise ratio (SNR) limited due to link budget constraints. One favourable method to overcome this limitation is to focus on the pre-log factors of the channel capacity. Multiple-input multiple-output (MIMO) techniques are therefore a promising avenue of research. However, inter-channel interference in MIMO limits the performance. Spatial modulation (SM) avoids this limitation. Furthermore, the performance of MIMO systems in VLC is limited by the similarities among spatial channels. This limitation becomes particularly severe in intensity modulation/direct detection systems because of the lack of phase information. The motivation of this paper is to propose a system that results in a multi-channel transmission system that enable reliable multi-user optical MIMO SM transmission without the need for a precoder, power allocation algorithm or additional optics at the receiver. A general bit error performance model for the SM system is developed for an arbitrary number of light-emitting diodes (LEDs) and pulse amplitude modulation orders. Based on this model, an LED array structure is designed to result in a spatially separated multiple channel by manipulating the transmitter geometry.This article is part of the theme issue ‘Optical wireless communication’.
DOI: 10.6084/m9.figshare.11790933.v1
title: TeX/LaTeX Class file from Optical spatial modulation design

description: Visible light communication (VLC) systems are inherently signal-to-noise ratio (SNR) limited due to link budget constraints. One favourable method to overcome this limitation is to focus on the pre-log factors of the channel capacity. Multiple-input multiple-output (MIMO) techniques are therefore a promising avenue of research. However, inter-channel interference in MIMO limits the performance. Spatial modulation (SM) avoids this limitation. Furthermore, the performance of MIMO systems in VLC is limited by the similarities among spatial channels. This limitation becomes particularly severe in intensity modulation/direct detection systems because of the lack of phase information. The motivation of this paper is to propose a system that results in a multi-channel transmission system that enable reliable multi-user optical MIMO SM transmission without the need for a precoder, power allocation algorithm or additional optics at the receiver. A general bit error performance model for the SM system is developed for an arbitrary number of light-emitting diodes (LEDs) and pulse amplitude modulation orders. Based on this model, an LED array structure is designed to result in a spatially separated multiple channel by manipulating the transmitter geometry.This article is part of the theme issue ‘Optical wireless communication’.
DOI: 10.6084/m9.figshare.11790342
title: Dataset for "Similarities in the behaviour of dance followers among honey bee species suggest a conserved mechanism of dance communication"

description: Two datasets containing the dance follower numbers and dance follower body orientation with respect to the dancer for the manuscript "Similarities in the behaviour of dance followers among honey bee species suggests a conserved mechanism of dance communication".The first contains the number of followers present in each zone around the dancer, during three different phases of the waggle run (Start, Middle and End) for all dances analysed from all three species.The second contains the body orientation of all the followers identified in the first dataset.Refer to the manuscript uploaded in bioRxiv for more details (https://biorxiv.org/cgi/content/short/2020.02.02.931345v1).<br><br><br>
DOI: 10.6084/m9.figshare.11790333
title: Proteome database of Clostridium perfringens B str ATCC 3626

description: <i>Clostridium perfringens</i> is a Gram-positive anaerobic bacterium capable of forming spores, and is a known human pathogen. This work sought to provide fundamental proteomic information of the species by parsing the UniProt proteome file of <i>C. perfringens</i> B str ATCC 3626 using an in-house MATLAB proteome analysis software. The resulting proteome database comprises protein name, amino acid sequence, number of residues, molecular weight and nucleotide sequence of protein. The work should find use in informing molecular experiments aiming to understand the genes involved in pathogenesis in <i>C. perfringens</i>. <br><br>
DOI: 10.6084/m9.figshare.11790333.v1
title: Proteome database of Clostridium perfringens B str ATCC 3626

description: <i>Clostridium perfringens</i> is a Gram-positive anaerobic bacterium capable of forming spores, and is a known human pathogen. This work sought to provide fundamental proteomic information of the species by parsing the UniProt proteome file of <i>C. perfringens</i> B str ATCC 3626 using an in-house MATLAB proteome analysis software. The resulting proteome database comprises protein name, amino acid sequence, number of residues, molecular weight and nucleotide sequence of protein. The work should find use in informing molecular experiments aiming to understand the genes involved in pathogenesis in <i>C. perfringens</i>. <br><br>
DOI: 10.6084/m9.figshare.11789490
title: Additional file 8 of Identification of QTLs and candidate genes for physiological traits associated with drought tolerance in cotton

description: Additional file 8: Table S5. Genome co-ordinates of all the SNPs with physical positions (bp), genetic position (cM) and the alleles.
DOI: 10.6084/m9.figshare.11789490.v1
title: Additional file 8 of Identification of QTLs and candidate genes for physiological traits associated with drought tolerance in cotton

description: Additional file 8: Table S5. Genome co-ordinates of all the SNPs with physical positions (bp), genetic position (cM) and the alleles.
DOI: 10.6084/m9.figshare.11789442
title: Additional file 13 of Identification of QTLs and candidate genes for physiological traits associated with drought tolerance in cotton

description: Additional file 13. Newick structure and protein sequences used in phylogenetic tree analysis.
DOI: 10.6084/m9.figshare.11789442.v1
title: Additional file 13 of Identification of QTLs and candidate genes for physiological traits associated with drought tolerance in cotton

description: Additional file 13. Newick structure and protein sequences used in phylogenetic tree analysis.
DOI: 10.6084/m9.figshare.11789433
title: Additional file 2 of Black soldier fly and gut health in broiler chickens: insights into the relationship between cecal microbiota and intestinal mucin composition

description: Additional file 2. Relative abundance of the main bacterial phyla and genera of cecal microbiota of broiler chickens fed with control (C), 5% (HI5), 10% (HI10) and 15% (HI15) inclusion level of Hermetia illucens meal diets.
DOI: 10.6084/m9.figshare.11789427
title: Additional file 1 of Black soldier fly and gut health in broiler chickens: insights into the relationship between cecal microbiota and intestinal mucin composition

description: Additional file 1. Ingredients and chemical composition of the experimental diets. Mineral-vitamin premix: vitamin A (retinyl acetate), 12,500 IU; vitamin D3 (cholecalciferol), 3000 IU; vitamin E (DL-a-tocopheryl acetate), 60 IU; vitamin K (menadione sodium bisulfite), 1.02 mg; riboflavin, 2.0 mg; pantothenate, 8.0 mg; niacin, 6 mg; piridossin, 4 mg; folic acid, 0.5 mg; biotin, 0.10 mg; tiamin, 1.0 mg; vitamin B12, 20 mg; Mn, 120 mg; Zn, 80 mg; Fe, 52 mg; Cu, 15 mg; I, 1.5 mg; Se, 0.4 mg. AME = apparent metabolizable energy; CP = crude protein; EE = ether extract; CF = crude fiber; C = control; HI5 = 5% inclusion level of Hermetia illucens; HI10 = 10% inclusion level of Hermetia illucens; HI15 = 15% inclusion level of Hermetia illucens.
DOI: 10.6084/m9.figshare.11789433.v1
title: Additional file 2 of Black soldier fly and gut health in broiler chickens: insights into the relationship between cecal microbiota and intestinal mucin composition

description: Additional file 2. Relative abundance of the main bacterial phyla and genera of cecal microbiota of broiler chickens fed with control (C), 5% (HI5), 10% (HI10) and 15% (HI15) inclusion level of Hermetia illucens meal diets.