cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10406878
title: Data: Methods for tagging an ectoparasite, the salmon louse Lepeophtheirus salmonis

description: Monitoring individuals within populations is a cornerstone in evolutionary ecology, yet individual tracking of invertebrates and particularly parasitic organisms remains rare. To address this gap, we describe here a method for attaching radio frequency identification (RFID) tags to individual adult females of a marine ectoparasite, the salmon louse Lepeophtheirus salmonis. Comparing two alternative types of glue, we found that one of them (2-octyl cyanoacrylate, 2oc) gave a significantly higher tag retention rate than the other (ethyl 2-cyanoacrylate, e2c). This glue comparison test also resulted in a higher loss rate of adult ectoparasites from the population where tagging was done using 2oc, but this included males not tagged and thus could also suggest a mere tank effect. Corroborating this, a more extensive analysis using data collected over two years showed no significant difference in mortality after repeated exposure to the 2oc glue, nor did it show any significant effect of the tagging procedure on the reproduction of female salmon lice. The proportion of RFID-tagged individuals followed a negative exponential decline, with tag retention among the living female population generally high. The projected retention was found to be about 88% after 30 days or 80% after 60 days, although one of the four batches of glue used, purchased from a different supplier, appeared to give significantly lower tag retention and with greater initial loss (74% and 60% respectively). Overall, we find that RFID tagging is a simple and effective technology that enables documenting individual life histories for invertebrates of a suitable size, including marine and parasitic species, and that it can be used over long periods of study.
DOI: 10.5281/zenodo.3473466
title: NICER PSR J0030+0451 Illinois-Maryland MCMC Samples

description: Posterior samples from the Illinois-Maryland analysis of NICER data for PSR J0030+0451.
DOI: 10.5281/zenodo.3692070
title: morganemacleod/PreCEMassLoss: v1.0

description: Figures and data accompanying MacLeod & Loeb 2020: "Pre-Common-Envelope Mass Loss from Coalescing Binary Systems"
DOI: 10.5281/zenodo.3908519
title: Heating Rates for Protons and Electrons in Polar Coronal Holes: Empirical Constraints from UVCS/SOHO (Associated Data)

description: The accompanying files provide some "data behind the figures," as well as some supplementary data (e.g., properties of Monte Carlo trial models), for the paper titled "Heating Rates for Protons and Electrons in Polar Coronal Holes: Empirical Constraints from the Ultraviolet Coronagraph Spectrometer" (by Steven R. Cranmer), which was submitted to the Astrophysical Journal on 25 May 2020, and is currently undergoing revision in response to the referee's report as of 25 June 2020. All files ought to be in standard "Machine Readable Table" format. v1.1 note: The paper has been published as ApJ, vol. 900, paper number 105.<br> ADS link: https://ui.adsabs.harvard.edu/abs/2020ApJ...900..105C/abstract<br>
DOI: 10.5281/zenodo.4670689
title: NICER PSR J0740+6620 Illinois-Maryland MCMC Samples

description: Posterior samples from the Illinois-Maryland analysis of NICER and XMM-Newton data for PSR J0030+0451. Files ending in "RM" contain only equatorial circumferential radius and gravitational mass posterior samples. Files ending in "full" contain the full set of posterior samples from each analysis. Files starting with "NICER-only" contain samples from the analysis of NICER data alone.<br> Files starting with "NICER+XMM" contain samples from the joint NICER + XMM analysis, assuming no relative calibration offset between the instruments.<br> Files starting with "NICER+XMM-relative" contain samples from the joint NICER + XMM analysis, allowing for up to a +-10% offset in the relative calibration between the instruments.
DOI: 10.5281/zenodo.4682798
title: Dataset from: Fallback Supernova Assembly of Heavy Binary Neutron Stars and Light Black Hole-Neutron Star Pairs and the Common Stellar Ancestry of GW190425 and GW200115

description: The results of the simulations shown in "Fallback Supernova Assembly of Heavy Binary Neutron Stars and Light Black Hole-Neutron Star Pairs and the Common Stellar Ancestry of GW190425 and GW200115" (arXiv:2106.12381). Contents: Run_Details_COMPAS COMPAS_Output_*.hdf5 MESA.zip GADGET.zip If you use any of these data please kindly include a citation to:<br> Alejandro Vigna-Gómez <em>et al</em> 2021 <em>ApJL</em> <strong>920</strong> L17 doi:10.3847/2041-8213/ac2903 If you use the MESA profile or history files please also cite: Aguilera-Dena, D.R., et al., in prep. Additionally, we point the reader towards the following GitHub repositories:<br> 1) aldobatta/fallback-supernova<br> 2) avigna/heavy-BinaryNeutronStars
DOI: 10.5281/zenodo.5784510
title: A Nuclear Equation of State Inferred from Stellar r-Process Abundances: Data

description: This repository contains the raw MCMC posteriors as H5 files for the three cases presented in "A Nuclear Equation of State Inferred from Stellar <em>r</em>-Process Abundances" (Holmbeck et al., arXiv:2110.06432). Also included are Python scripts with a variety of functions to read the H5 files and interpret the data with LALSuite. These include: reading the data contained in the H5 file (likelihood, acceptance, and values for each MCMC step) generating a corner plot of the data finding the maximum likelihood in the posterior distribution calculating a neutron star mass-radius curve for a posterior EOS calculating pressure and density for a posterior EOS calculating observables (M_TOV, R_1.4, and L) associated with an EOS The scripts are written for Python3 compatibility and depend on: lalsuite h5py numpy scipy matplotlib corner For more information and how to use these scripts, see the comments in `example.py` or contact Erika Holmbeck. If any of our posterior samples are used in your work, we ask that you appropriately cite this repository and the original paper (Holmbeck et al., arXiv:2110.06432).
DOI: 10.5445/ir/1000086708
title: Uniaxial Pressure Control of Competing Orders in a High Temperature Superconductor
DOI: 10.15783/c73k5b
title: CRAWDAD dataset rice/ad_hoc_city (v. 2003-09-11)

description: We acquired several weeklong traces of the movement of the fleet of 
city buses in Seattle, Washington, on their normal routes providing
passenger bus service throughout the city.
description: Changelog: the initial version
DOI: 10.21227/77f3-g257
title: Operational data and detailed information of solar farm inverter transformers

description: This dataset contains operational data and detailed information of three inverter transformers in a 3.275 MW PV plant in the outskirt of Brisbane, Australia. The data includes load current, top-oil temperature, moisture in top oil, ambient temperature, solar irradiance and individual current harmonics (up to 31st order). The time interval of the data is either 1 minute or 3 seconds (dependent on the data type). The data can be used to study the ageing of inverter transformers in this PV plant.
DOI: 10.25773/q2kh-rd09
title: Dataset: Numerical experiments on the sensitivity of Chesapeake Bay hypoxia to physical forcings and the associated code and input files
DOI: 10.26093/cds/vizier.17490177
title: Yellow and red supergiants in the LMC

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Yellow and red supergiants in the Large Magellanic Cloud.' (bibcode: 2012ApJ...749..177N)
DOI: 10.4225/08/59183e949e033
title: Vela pulsar data with the Parkes testbed facility

description: Data described in Sarkissian et al.  We have used the Parkes test-bed facility (12-m telescope) to observe Vela over 1 year.  We present the timing data and our glitch parameters.
DOI: 10.5281/zenodo.3358819
title: Radio emission from a pulsar's magnetic pole revealed by general relativity: a data archive

description: This repository contains all pulsar data presented as part of the Science paper: "Radio emission from a pulsar's magnetic pole revealed by general relativity". These data consist of pulse profiles archives of PSR J1906+0746 observed by the Nancay and Arecibo radio telescopes between 2005 and 2018, that are readable by the PSRCHIVE package, see e.g. van Straten et al., Astronomical Research and Technology 9, 237 (2012).
description: GD gratefully acknowledge support from European Research Council (ERC) Synergy Grant "BlackHoleCam" Grant Agreement Number 610058. JvL acknowledges funding from the Netherlands Organisation for Scientific Research (NWO) under project "Clean-Machine" (614.001.301) and from the ERC under the European Unions Seventh Framework Programme (FP/2007-2013) / ERC Grant Agreement n. 617199. Pulsar research at UBC is supported by an NSERC Discovery Grant and by the Canadian Institute for Advanced Research. The Arecibo Observatory is operated by SRI International under a cooperative agreement with the NSF (AST-1100968), and in alliance with Ana G. Méndez-Universidad Metropolitana, and the Universities Space Research Association. The Nançay radio Observatory is operated by the Paris Observatory, associated to the French Centre National de la Recherche Scientifique (CNRS) and to the Université d'Orléans.
DOI: 10.5281/zenodo.7750985
title: Data from: More than 10,000 pre-Columbian earthworks are still hidden throughout Amazonia

description: Dataset: This set of data and R computer codes were used to create the predictive model, figures, and develop analysis on the manuscript "Over 10,000 Pre-Columbian earthworks are still hidden throughout Amazonia" submitted to Science journal as a research article (DOI: ...ade2541). Please read the materials and methods sections on the manuscript supplementary materials, along with the data provided in the "Database" folder, to ensure reproducibility.
Earthwork Predictive Model: The Inhomogeneous Poisson Process (IPP) model fit was performed using the 'fit_bayesPO' function of the 'bayesPO' library in R version 4.0.2. The model was developed by the author of the package Guido Alberti Moreira. The outputs in linear and logarithmic (base 10) scale are also available in '.tif' format at 1km spatial resolution.
Figures: Figures created from R computer codes presented on the Main text are inside the "MainText_figures" folder, and Supplementary material figures are inside the "SuppMaterial_figures" folder. Please utilize the instructions in the supplementary material in conjunction with the data in the "database" folder to ensure reproducibility.
Dataset usage: It is free to use, but if you use this dataset in your work, please make sure to cite the repository and our paper properly. We also welcome users to invite us for collaboration.
For the use of this dataset, please cite:

Vinicius Peripato et al., More than 10,000 pre-Columbian earthworks are still hidden throughout Amazonia. Science 382, 103-109 (2023). DOI: 10.1126/science.ade2541
Vinicius Peripato et al., Data from: More than 10,000 Pre-Columbian earthworks are still hidden throughout Amazonia (2023). DOI: 10.5281/zenodo.7750985
DOI: 10.17031/659d1e0b8d832
title: 1958 Marine Biological Association of the UK (MBA) European Continental Slope RV Sarsia Cruise No. 6

description: Records from the 1958 RV Sarsia cruise no. 6 to the European continental shelf off the west coast of France. Samples of benthos were collected using a mixture of 4ft rectangular dredge and bowed dredge. Records were supplied by Dr. Eve Southward and collated by DASSH as part of the 'Dredging the Depths' project.
DOI: 10.6084/m9.figshare.25002131.v2
title: Water Quality Monitoring Dataset (Ireland)

description: This study utilizes water quality data from <b>Cork Harbour, Moy Killala, and 15 other coastal locations in Ireland</b>. The Environmental Protection Agency (EPA) of Ireland manages and evaluates this dataset as part of their monitoring program. The extracted data comprises 445,125 entries from Cork Harbour, 722,532 entries from Moy Killala, and 15 other randomly selected locations, all stored in .csv format. Upon merging these disparate .csv files, the dataset expanded to 1,276,654 entries. Following a pivot operation on <b>11 parameters</b> (<b>Alkalinity-total (as CaCO3), Ammonia-Total (as N), BOD - 5 days (Total), Chloride, Conductivity @25°C, Dissolved Oxygen, ortho-phosphate (as P) - unspecified, pH, Temperature, Total Hardness (as CaCO3), True Colour</b>), the dataset was reduced to <b>29,159 rows</b>. The selection of parameters was based on their availability across the entire dataset and aimed at encompassing fundamental measurements of water quality.This repository has two csv files:Water Quality Monitoring Dataset_ Ireland.csv - with Raw Water Quality DataWQI Results on Dataset - Which has the calculated Water Quallity Indices (CCME, WAWQI, Horton, SRDD, Brown) results of water quality
DOI: 10.5281/zenodo.10517529
title: Human Auditory Delayed Discrimination Task Dataset

description: In the experiment, subjects received, in each trial, a pair of sounds played from headphones. The subject self-initiated each trial by clicking mouse on the monitor screen. The first sound was then presented together with a green square on the left side of a computer monitor in front of the subject. This was followed by a delay period, indicated by ‘WAIT!’ on the screen, then the second sound was presented together with a red square on the right side of the screen. At the end of the second stimulus, by presenting the two squares, subjects were required to compare the two sounds and decide which one was louder, then indicate their choice by clicking the green square if the first sound was louder or the red square if the second sound was louder. Then a question asked from the subject about the sureness of correctness of the response and the subject has to indicate a percentage between zero to one hundred. After settlement of the sureness, the Written feedback about the correctness of their response was provided on the screen, for individual trials. There are 150 trials in each session. Each subject participated only in one session.
DOI: 10.5281/zenodo.10517530
title: Human Auditory Delayed Discrimination Task Dataset

description: In the experiment, subjects received, in each trial, a pair of sounds played from headphones. The subject self-initiated each trial by clicking mouse on the monitor screen. The first sound was then presented together with a green square on the left side of a computer monitor in front of the subject. This was followed by a delay period, indicated by ‘WAIT!’ on the screen, then the second sound was presented together with a red square on the right side of the screen. At the end of the second stimulus, by presenting the two squares, subjects were required to compare the two sounds and decide which one was louder, then indicate their choice by clicking the green square if the first sound was louder or the red square if the second sound was louder. Then a question asked from the subject about the sureness of correctness of the response and the subject has to indicate a percentage between zero to one hundred. After settlement of the sureness, the Written feedback about the correctness of their response was provided on the screen, for individual trials. There are 150 trials in each session. Each subject participated only in one session.
DOI: 10.5281/zenodo.7774615
title: Dataset related to the article: "Impact of Sacubitril/Valsartan on Circulating microRNA in  Patients with Heart Failure"

description: This record contains raw data related to the article "Impact of Sacubitril/Valsartan on Circulating microRNA in Patients with Heart Failure"


Abstract: Sacubitril/Valsartan, used for the treatment of heart failure (HF), is a combination of two drugs, an angiotensin receptor inhibitor, and a neprilysin inhibitor, which activates vasoactive peptides. Even though its beneficial effects on cardiac functions have been demonstrated, the mechanisms underpinning these effects remain poorly understood. To achieve more mechanistic insights, we analyzed the profiles of circulating miRNAs in plasma from patients with stable HF with reduced ejection function (HFrEF) and treated with Sacubitril/Valsartan for six months. miRNAs are short (22–24 nt) non-coding RNAs, which are not only emerging as sensitive and stable biomarkers for various diseases but also participate in the regulation of several biological processes. We found that in patients with high levels of miRNAs, specifically miR-29b-3p, miR-221-3p, and miR-503-5p, Sacubitril/Valsartan significantly reduced their levels at follow-up. We also found a significant negative correlation of miR-29b-3p, miR-221-3p, and miR-503-5p with VO2 at peak exercise, whose levels decrease with HF severity. Furthermore, from a functional point of view, miR-29b-3p, miR-221-3p, and miR-503-5p all target Phosphoinositide-3-Kinase Regulatory Subunit 1, which encodes regulatory subunit 1 of phosphoinositide-3-kinase. Our findings support that an additional mechanism through which Sacubitril/Valsartan exerts its functions is the modulation of miRNAs with potentially relevant roles in HFrEF pathophysiology.


 
description: This work was supported by the Italian Ministry of Health, Rome, Italy (Ricerca Corrente, Centro Cardiologico Monzino IRCCS) and 5XMILLE 2018
DOI: 10.5281/zenodo.7774616
title: Dataset related to the article: "Impact of Sacubitril/Valsartan on Circulating microRNA in  Patients with Heart Failure"

description: This record contains raw data related to the article "Impact of Sacubitril/Valsartan on Circulating microRNA in Patients with Heart Failure"


Abstract: Sacubitril/Valsartan, used for the treatment of heart failure (HF), is a combination of two drugs, an angiotensin receptor inhibitor, and a neprilysin inhibitor, which activates vasoactive peptides. Even though its beneficial effects on cardiac functions have been demonstrated, the mechanisms underpinning these effects remain poorly understood. To achieve more mechanistic insights, we analyzed the profiles of circulating miRNAs in plasma from patients with stable HF with reduced ejection function (HFrEF) and treated with Sacubitril/Valsartan for six months. miRNAs are short (22–24 nt) non-coding RNAs, which are not only emerging as sensitive and stable biomarkers for various diseases but also participate in the regulation of several biological processes. We found that in patients with high levels of miRNAs, specifically miR-29b-3p, miR-221-3p, and miR-503-5p, Sacubitril/Valsartan significantly reduced their levels at follow-up. We also found a significant negative correlation of miR-29b-3p, miR-221-3p, and miR-503-5p with VO2 at peak exercise, whose levels decrease with HF severity. Furthermore, from a functional point of view, miR-29b-3p, miR-221-3p, and miR-503-5p all target Phosphoinositide-3-Kinase Regulatory Subunit 1, which encodes regulatory subunit 1 of phosphoinositide-3-kinase. Our findings support that an additional mechanism through which Sacubitril/Valsartan exerts its functions is the modulation of miRNAs with potentially relevant roles in HFrEF pathophysiology.


 
description: This work was supported by the Italian Ministry of Health, Rome, Italy (Ricerca Corrente, Centro Cardiologico Monzino IRCCS) and 5XMILLE 2018
DOI: 10.34740/kaggle/ds/4311267
title: 🍽️ Top 500 Melbourne Eateries: TripAdvisor's Best
DOI: 10.5281/zenodo.10517620
title: Rat Auditory Delayed Discrimination Task Dataset

description: This dataset contains behavioral data from an experiment with rats. This is a summary of the experiment: We developed a computerized protocol to train rats, in high-throughput facilities, to perform an auditory delayed comparison task. All training takes place in three-port operant conditioning chambers, in which ports are arranged side-by-side along one wall, with two speakers placed above the left and right nose ports. A visible light-emitting diode in the centre port signals the availability of each trial. Rat subjects initiate a trial by inserting their nose into the center port, which causes the center light to turn off. Rats must keep their nose in the centre port (fixation period) until an auditory go cue (a 6-kHz pure tone for 200 ms) signals the end of fixation. Only after the go cue can subjects withdraw and orient to one of the side ports to receive a reward of water. During the fixation period two auditory stimuli, sa and sb, separated by a variable delay, are played for 400 ms, with short delay periods of 250 ms inserted before sa and after sb. Rats should judge which out of the two stimuli, sa and sb, had the greater SPL standard deviation. If sa > sb, the correct action is to poke the nose into the right-hand nose port to collect the reward, and if sa < sb, rats should orient to the left-hand nose port. Trial durations are independently varied on a trial-by-trial basis, by varying the delay interval between the two stimuli, which can be as short as 2 s or as long as 12 s. The delay between the two stimuli is varied on a trial-by-trial basis, which makes the task more challenging and requires the rats to maintain their attention and memory over longer periods. Rats progressed through a series of shaping stages before the final version of the delayed comparison task, in which they learned to: associate light in the center poke with the availability of trials; associate special sounds from the side pokes with reward; maintain their nose in the center poke until they hear an auditory go signal; and compare the two sa and sb stimuli.stages descriptions:

 

There are six stages involved in the training process, each of which builds on the previous stage and introduces new aspects of the task. In stage 1, rats learn to associate the lights on either side with the availability of trials and poke into the lightened side poke to get a reward.

In stage 2, rats learn to initiate a trial by poking their nose into the center port and waiting for a go cue sound to signal the end of the fixation period. They can then withdraw and orient to one of the side ports to receive a reward.

In stage 3, the fixation period is gradually increased in duration over successive trials. This is designed to increase the rats ability to maintain their attention and focus during the task.

in the dataset, only the three first stages’ data is included. 

. then a go cue sound plays. that means that rat can