cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5474741v
title: MassIVE MSV000097070 - GNPS for rare actinomyces nocardia
title: Nocardia are gram-positive rods characterized by filamentous, tree-like branching growth, which has caused them to be confused with fungi in the past. They are opportunists that can sometimes produce indolent, slowly progressive diseases.
DOI: 10.15468/dl.vpwzew
title: Occurrence Download

description: A dataset containing 30481 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Musaceae)"
 ]
}

 The dataset includes 30481 records from 627 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019106-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14830300
title: European Union Machine Learning Research: A network anal-ysis of collaboration in higher education (2020–2024)
DOI: 10.5281/zenodo.14830301
title: European Union Machine Learning Research: A network anal-ysis of collaboration in higher education (2020–2024)
DOI: 10.15468/dl.79d854
title: Occurrence Download

description: A dataset containing 368 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "DatasetKey is iNaturalist Research-grade Observations",
 "OccurrenceStatus is Present",
 "TaxonKey is Mikania micrantha Kunth"
 ]
}

 The dataset includes 368 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019110-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c50g3h973
title: MassIVE MSV000097071 - GNPS for Platostoma Coloratum
title: Platostoma coloratum is a perennial shrub belonging to the Lamiaceae family. It is found at an altitude of 150 to 1600 m and is distributed in the Himalayan region in places such as Nepal, India, and China. It is rich in various secondary metabolites that are responsible for its anticancer, antioxidant, and antibacterial properties.Colored Jungle Basil is a shrub about 2 m tall, with stems erect, scaly finely velvet-hairy. Leaf-stalks are less than 1 cm.The native range of this species is Himalaya to China (Yunnan). It is a subshrub or shrub and grows primarily in the subtropical biome.Native to Assam, Bangladesh, China South-Central, East Himalaya, Laos, Myanmar, Nepal, Thailand, West Himalaya.It is a subshrub or shrub and grows primarily in the subtropical biome.
DOI: 10.15468/dl.yzet5k
title: Occurrence Download

description: A dataset containing 3244 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "DatasetKey is one of (iNaturalist Research-grade Observations, SeasonWatch - Tree Phenology Dataset (India), India Biodiversity Portal publication grade dataset, Pl@ntNet observations, Plant Occurrence Data from: Plant Community Structure in Tropical Rain Forest Fragments of the Western Ghats, India, Pl@ntNet automatically identified occurrences, BARO Herbarium, The M.S University of Baroda, Royal Botanic Gardens, Kew - Herbarium Specimens, Naturalis Biodiversity Center (NL) - Botany, Herbarium of the French Institute of Pondicherry)",
 "TaxonKey is Lantana camara L."
 ]
}

 The dataset includes 3244 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019111-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28367465
title: Risk of bias 2 assessment (justifications and traffic light plot)

description: Risk of bias 2 assessment (justifications and traffic light plot)
DOI: 10.6084/m9.figshare.28367465.v1
title: Risk of bias 2 assessment (justifications and traffic light plot)

description: Risk of bias 2 assessment (justifications and traffic light plot)
DOI: 10.15151/esrf-es-2006252189
title: Structural studies of various proteins in Uppsala

description: The Block Allocation Group (BAG) includes projects for protein structure-based studies at Uppsala University (UU) and the Swedish University for Agricultural Sciences (SLU, Uppsala) under the canopy of Professor Stefan D Knight (UU). A broad range of scientific topics are covered, including but not limited to antibiotics resistance, drug development aiming at new antibiotics, photosynthesis, carbohydrate synthesis and degradation, enzymology, protein evolution, transcription, chromatin remodelling, metal homeostasis, amyloid, and molecular chaperones.
DOI: 10.15151/esrf-es-2006254164
title: BAG for Signal transduction, DNA repair, marine & structural glycobiology, bacterial polyketide synthases, starch biosynthesis, regulation o

description: BAG regrouping small crystallographic teams at Lille, Orléans, Roscoff, Nancy and Marseille. For all projects both SAXS and MX-crystallography studies are
required to cover different aspects and scales of these often multimodular proteins. The projects in Lille concern Type V secretion systems, Sars-Cov proteins,
regulatory networks of signal transduction, starch metabolism (synthesis) and structural glycobiology. In Roscoff the projects concern marine glycobiology
and marine phage proteins, deciphering functions of 'unknown' proteins and PUL assemblages. The projects treated in Orléans are DNA structure and repair,
transcription regulation, molecular mechanisms of oxidative stress; in Nancy the studies concern the regulation and mechanisms of prokaryotic polyketide
syntheses. The subjects of Marseille are SAXS studies of ordered and disordered proteins involved in regulation of CO2 assimilation in microalgae.
DOI: 10.15151/esrf-es-2007498569
title: Southampton, Bristol, Cardiff, Exeter, KCL, UCL Royal Free Block Allocation Group (BAG)

description: This BAG coordinates activities of groups from the South of the UK. The focus is on projects in Immunology, transcriptional regulation, and enzymology. Particular strengths are antimicrobial resistance research (AMR), drug development, and the macromolecular complexes that several of the groups target. Previous highlights are activities in rational protein design (Bristol), immunology/enzymology (Southampton), and HPMX enzymology (KCL). We are interested in dynamic structural biology (Southampton), see ESRF news (13-7-22), and use spectroscopy and SAXS to gain this insight. The bag is joined by new PI members from Bristol and Southampton. For our projects we apply for time on crystallographic beamlines, spectroscopy (BM07 and icOS), SAXS and cryoEM.
DOI: 10.15151/esrf-es-2036641093
title: Beamline alignment, detector commissioning, and test scans on fixed and resin embedded fruit fly samples

description: After weekly beamline alignment we will continue detector commissioning and perform test acquisitions on fixed, and resin embedded, fruit fly samples.
DOI: 10.5517/ccdc.csd.cc2jl4hs
title: CCDC 2341135: Experimental Crystal Structure Determination

description: Related Article: Deepika Thakur, Shivam A. Meena, Manvi Sharma, Akhilesh K. Verma|2025|Chem.Commun.|61|5313|doi:10.1039/D5CC00461F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jn3nz
title: CCDC 2343031: Experimental Crystal Structure Determination

description: Related Article: Deepika Thakur, Shivam A. Meena, Manvi Sharma, Akhilesh K. Verma|2025|Chem.Commun.|61|5313|doi:10.1039/D5CC00461F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ljch0
title: CCDC 2399012: Experimental Crystal Structure Determination

description: Related Article: Jan Janczak|2025|Polyhedron|272|117470|doi:10.1016/j.poly.2025.117470
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lvnbg
title: CCDC 2408896: Experimental Crystal Structure Determination

description: Related Article: Vikrant Nawal Vikram, Mohit Chourasiya, Ruchir Kant, Narender Tadigoppula|2025|Org.Biomol.Chem.|23|3567|doi:10.1039/D4OB02098G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lz28y
title: CCDC 2412180: Experimental Crystal Structure Determination

description: Related Article: Xuechao Yan, Shu-Xiao Ji, Shengyuan Zhang, Qianru Wang, Jianping Guo, Ping Chen, Zhenfeng Xi, Junnian Wei|2025|Dalton Trans.|54|6246|doi:10.1039/D5DT00644A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jj126
title: CCDC 2339107: Experimental Crystal Structure Determination

description: Related Article: Mahdi Behzad, Liana Ghasemi, S. Bahareh Hossieni, Maryam Hasanzadeh Esfahani, Adeleh Divsalar, Monika Kučeráková, Michal Dusek|2025|Inorg.Chem.Commun.|177|114367|doi:10.1016/j.inoche.2025.114367
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lz32s
title: CCDC 2412205: Experimental Crystal Structure Determination

description: Related Article: Xuechao Yan, Shu-Xiao Ji, Shengyuan Zhang, Qianru Wang, Jianping Guo, Ping Chen, Zhenfeng Xi, Junnian Wei|2025|Dalton Trans.|54|6246|doi:10.1039/D5DT00644A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lz35w
title: CCDC 2412208: Experimental Crystal Structure Determination

description: Related Article: Xuechao Yan, Shu-Xiao Ji, Shengyuan Zhang, Qianru Wang, Jianping Guo, Ping Chen, Zhenfeng Xi, Junnian Wei|2025|Dalton Trans.|54|6246|doi:10.1039/D5DT00644A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jj137
title: CCDC 2339108: Experimental Crystal Structure Determination

description: Related Article: Mahdi Behzad, Liana Ghasemi, S. Bahareh Hossieni, Maryam Hasanzadeh Esfahani, Adeleh Divsalar, Monika Kučeráková, Michal Dusek|2025|Inorg.Chem.Commun.|177|114367|doi:10.1016/j.inoche.2025.114367
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jj16b
title: CCDC 2339111: Experimental Crystal Structure Determination

description: Related Article: Mahdi Behzad, Liana Ghasemi, S. Bahareh Hossieni, Maryam Hasanzadeh Esfahani, Adeleh Divsalar, Monika Kučeráková, Michal Dusek|2025|Inorg.Chem.Commun.|177|114367|doi:10.1016/j.inoche.2025.114367
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.15232628
title: PortUrb: A Performance Portable, High-Order, Moist Atmospheric Large Eddy Simulation Model with Variable-Friction Immersed Boundaries -- Dataset

description: This repository contains gridded data and plotting scripts for all data presented in the paper titled, "PortUrb: A Performance Portable, High-Order, Moist Atmospheric Large Eddy Simulation Model with Variable-Friction Immersed Boundaries"





city_2m*_tavg.nc: 2m Manhattan data averaged in the time range of [10,100]s for different building friction values




processed_ABL_convective*.nc: Data for the convective ABL runs at 1,800s intervals in the time range [2,3]hr




processed_ABL_neutral_000000*.nc: Data for the neutral ABL runs at times 0hr, 8hr, and 10hr




processed_city_2m_5e-2_00000100.nc: Instantaneous 2m Manhattan data at 100s




processed_cubes_periodic_z0cube-*.nc: Data for periodic flow past cubes for different surface and cube friction values




processed_supercell_1000m_00000*.nc: Data for the supercell test case at 1 min intervals




sphere_*.nc: low and high resolution flow past a sphere data at different immersed proportion power values




*.py: Plotting scripts



This research used resources of the Oak Ridge Leadership Computing Facility at the Oak Ridge National Laboratory, which is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC05-00OR22725.
DOI: 10.5281/zenodo.15232629
title: PortUrb: A Performance Portable, High-Order, Moist Atmospheric Large Eddy Simulation Model with Variable-Friction Immersed Boundaries -- Dataset

description: This repository contains gridded data and plotting scripts for all data presented in the paper titled, "PortUrb: A Performance Portable, High-Order, Moist Atmospheric Large Eddy Simulation Model with Variable-Friction Immersed Boundaries"





city_2m*_tavg.nc: 2m Manhattan data averaged in the time range of [10,100]s for different building friction values




processed_ABL_convective*.nc: Data for the convective ABL runs at 1,800s intervals in the time range [2,3]hr




processed_ABL_neutral_000000*.nc: Data for the neutral ABL runs at times 0hr, 8hr, and 10hr




processed_city_2m_5e-2_00000100.nc: Instantaneous 2m Manhattan data at 100s




processed_cubes_periodic_z0cube-*.nc: Data for periodic flow past cubes for different surface and cube friction values




processed_supercell_1000m_00000*.nc: Data for the supercell test case at 1 min intervals




sphere_*.nc: low and high resolution flow past a sphere data at different immersed proportion power values




*.py: Plotting scripts



This research used resources of the Oak Ridge Leadership Computing Facility at the Oak Ridge National Laboratory, which is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC05-00OR22725.
DOI: 10.6084/m9.figshare.26587434.v1
title: Additional file 7 of Microbe-Responsive Proteomes During Plant–Microbe Interactions Between Rice Genotypes and the Multifunctional Methylobacterium oryzae CBMB20

description: Additional file 7. Table S6. Gene ontology terms of significant DAPs in FL478-NI versus FL478-I.
DOI: 10.6084/m9.figshare.26587425
title: Additional file 4 of Microbe-Responsive Proteomes During Plant–Microbe Interactions Between Rice Genotypes and the Multifunctional Methylobacterium oryzae CBMB20

description: Additional file 4. Table S3. Gene ontology terms of more abundant DAPs in IR29-NI.
DOI: 10.6084/m9.figshare.26587425.v1
title: Additional file 4 of Microbe-Responsive Proteomes During Plant–Microbe Interactions Between Rice Genotypes and the Multifunctional Methylobacterium oryzae CBMB20

description: Additional file 4. Table S3. Gene ontology terms of more abundant DAPs in IR29-NI.
DOI: 10.6084/m9.figshare.26587431
title: Additional file 6 of Microbe-Responsive Proteomes During Plant–Microbe Interactions Between Rice Genotypes and the Multifunctional Methylobacterium oryzae CBMB20

description: Additional file 6. Table S5. Gene ontology terms of significant DAPS in IR29-NI versus IR29-I.
DOI: 10.5281/zenodo.13312636
title: Fürstenwalde KronenApotheke (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.5281/zenodo.13219916
title: Replication package for the paper "Polycentric Governance in Collusive Agreements"

description: Replication package for the empirical analysis presented in the paper "Polycentric Governance in Collusive Agreements"
DOI: 10.6084/m9.figshare.26563833.v1
title: Additional file 4 of Temporal transcriptomic changes in microRNAs involved in the host immune response and metabolism during Neospora caninum infection

description: Additional file 4: Data S4. All the DEmiRNAs.
DOI: 10.15468/dl.ppe9fc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.072437 -36.530698, 149.072437 -36.532944, 149.074683 -36.532944, 149.074683 -36.530698, 149.072437 -36.530698))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065655-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26641768
title: Additional file 2 of Molecular and functional profiling of chemotolerant cells unveils nucleoside metabolism-dependent vulnerabilities in medulloblastoma

description: Additional file 2. Supplementary Table S1.
DOI: 10.6084/m9.figshare.26641768.v1
title: Additional file 2 of Molecular and functional profiling of chemotolerant cells unveils nucleoside metabolism-dependent vulnerabilities in medulloblastoma

description: Additional file 2. Supplementary Table S1.
DOI: 10.6084/m9.figshare.26641771
title: Additional file 3 of Molecular and functional profiling of chemotolerant cells unveils nucleoside metabolism-dependent vulnerabilities in medulloblastoma

description: Additional file 3. Supplementary Table S2.
DOI: 10.6084/m9.figshare.26641771.v1
title: Additional file 3 of Molecular and functional profiling of chemotolerant cells unveils nucleoside metabolism-dependent vulnerabilities in medulloblastoma

description: Additional file 3. Supplementary Table S2.
DOI: 10.6084/m9.figshare.26563779
title: Additional file 8 of Phthalates impact on the epigenetic factors contributed specifically by the father at fertilization

description: Additional file 8: Table S7. Integrity of specifically paternally provided and di-butyl phthalate (DBP) responsive transcripts. RNA Element (RE)-containing RNAs (RE-RNAs) represented respond to DBP addition and subtraction in the same direction. Visual inspection is based on the UCSC Genome Browser. Bold text indicates the RE is shared between the paternally provided and DBP responsive samples, blue text indicates the DBP responsive RE was associated with the baseline to crossover (B1H or H1B) comparison and red text indicates the DBP responsive RE was associated with the crossover to crossback comparison (HB2 or BH2). Paternally provided indicates samples in which the fivefold paternally enriched and twofold paternally enriched REs were obtained. B1HB2; background DBP study arm baseline to crossover to crossback, H1BH2; high-DBP study arm baseline to crossover to crossback. Mean RE abundance is in Reads per Kilobase per Million (RPKM).
DOI: 10.6084/m9.figshare.26563779.v1
title: Additional file 8 of Phthalates impact on the epigenetic factors contributed specifically by the father at fertilization

description: Additional file 8: Table S7. Integrity of specifically paternally provided and di-butyl phthalate (DBP) responsive transcripts. RNA Element (RE)-containing RNAs (RE-RNAs) represented respond to DBP addition and subtraction in the same direction. Visual inspection is based on the UCSC Genome Browser. Bold text indicates the RE is shared between the paternally provided and DBP responsive samples, blue text indicates the DBP responsive RE was associated with the baseline to crossover (B1H or H1B) comparison and red text indicates the DBP responsive RE was associated with the crossover to crossback comparison (HB2 or BH2). Paternally provided indicates samples in which the fivefold paternally enriched and twofold paternally enriched REs were obtained. B1HB2; background DBP study arm baseline to crossover to crossback, H1BH2; high-DBP study arm baseline to crossover to crossback. Mean RE abundance is in Reads per Kilobase per Million (RPKM).
DOI: 10.6084/m9.figshare.26563770.v1
title: Additional file 5 of Phthalates impact on the epigenetic factors contributed specifically by the father at fertilization

description: Additional file 5: Table S4. All Di-butyl phthalate (DBP) responsive and paternally provided CRREWs within sperm. H1B; high-DBP (baseline visit) to background DBP (crossover visit), BH2; background DBP (crossover visit) to high-DBP (crossback visit), B1H; background DBP (baseline visit) to high-DBP (crossover visit), HB2; high-DBP (crossover visit) to background DBP (crossback visit), paternally provided, RE-containing RNAs (RE-RNAs) that are fivefold paternally enriched or twofold paternally enriched.
DOI: 10.6084/m9.figshare.26563776
title: Additional file 7 of Phthalates impact on the epigenetic factors contributed specifically by the father at fertilization

description: Additional file 7: Table S6. Number of paternally provided Chromatin remodeler cofactors, RNA interactors, readers, erasers and writers (CRREWs). A) Number of paternally provided CRREWs. B) Number of dibutyl-phthalate (DBP) responsive, paternally provided CRREWs. Representation factor and p value were determined by hypergeometric probability test. Paternally provided CRREWs include those that are fivefold paternally enriched and twofold paternally enriched.
DOI: 10.6084/m9.figshare.26563839
title: Additional file 6 of Temporal transcriptomic changes in microRNAs involved in the host immune response and metabolism during Neospora caninum infection

description: Additional file 6: Data S6. Gene Ontology (GO) enrichment analysis of targets for all the DEmiRNAs.