cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7339469
title: Commun_Biol_aphelid_datasets

description: <b>Transcriptome assembly</b>Metatranscriptome of <i>Paraphelidium tribonemae</i> (PRJNA402032) assembled with trinity, cleaned from non-eukaryote sequences using blobtools with the refseq taxonomy affiliation & cleaned from eukaryote contamination with blastp using a custom database with fungi & stramenopiles. 10,669 cleaned peptides predicted with transdecoder and annotated with eggnog-mapper.<br>Version 1.5 contains 10,439 peptides, after removing 230 peptides with high identity (97% to 100%) with <i>Tribonema gayanum</i> RNA-seq (unpublished).<br><b>Phylogenomics</b>3 protein datasets were used to infer the position of <i>Paraphelidium tribonemae</i>. All were previously used for phylogenomic analyses of Opisthokonta and, more specifically, Microsporidia. They are:- SCPD: 93 single-copy protein domains (SCPD) from Torruella et al. 2015 Curr Biol.- BMC: 53 proteins updated from Capella-Gutiérrez et al. 2012 BMC Biol.- GBE: 259 proteins updated from Mikhailov et al. 2017 Genome Biol Evol.<br>Here you can find the concatenated supermatrices 49sp and 36sp; with and without long-branch microsporidians respectively.
DOI: 10.6084/m9.figshare.7339475.v1
title: Short Census - Classical Rhetoric in the Middle Ages: The Medieval Rhetors and Their Art 400–1300, with Manuscript Survey to 1500 CE

description: The documents in this <i>Short Census</i> (on-line) are a list of medieval manuscripts around the world that contain evidence to show that medieval scholars knew and used the <i>De inventione</i> of Cicero and the Anonymous <i>Rhetorica ad Herennium</i>. These manuscripts also in many cases actually contain those two texts, or one of them. There is an introduction also that discusses this sort of evidence.<br>
DOI: 10.7284/101961
title: Expendable Probe data collected during research cruise RR1004 using a Sippican MK21 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/101956
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1004 using a Furuno GP-90D instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7339445
title: Local Authority District level expenditure estimates for 2008

description: Local Authority District level expenditure estimates for 2008
DOI: 10.6084/m9.figshare.7339448
title: Local Authority District level expenditure estimates for 2014

description: Local Authority District level expenditure estimates for 2014
DOI: 10.6084/m9.figshare.7339445.v1
title: Local Authority District level expenditure estimates for 2008

description: Local Authority District level expenditure estimates for 2008
DOI: 10.6084/m9.figshare.7339442
title: Local Authority District level expenditure estimates for 2011

description: Local Authority District level expenditure estimates for 2011
DOI: 10.6084/m9.figshare.7339448.v1
title: Local Authority District level expenditure estimates for 2014

description: Local Authority District level expenditure estimates for 2014
DOI: 10.7284/101957
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1004 using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7339439
title: Local Authority District level expenditure estimates for 2010

description: Local Authority District level expenditure estimates for 2010
DOI: 10.6084/m9.figshare.7339439.v1
title: Local Authority District level expenditure estimates for 2010

description: Local Authority District level expenditure estimates for 2010
DOI: 10.7284/101962
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1004 using a MX Marine MX421 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7339433
title: Local Authority District level expenditure estimates for 2015

description: Local Authority District level expenditure estimates for 2015
DOI: 10.6084/m9.figshare.7339436
title: Local Authority District level expenditure estimates for 2016

description: Local Authority District level expenditure estimates for 2016
DOI: 10.6084/m9.figshare.7339433.v1
title: Local Authority District level expenditure estimates for 2015

description: Local Authority District level expenditure estimates for 2015
DOI: 10.7284/101958
title: Gravimeter data collected during research cruise RR1004 using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7339427
title: Local Authority District level expenditure estimates for 2013

description: Local Authority District level expenditure estimates for 2013
DOI: 10.6084/m9.figshare.7339430
title: Local Authority District level expenditure estimates for 2012

description: Local Authority District level expenditure estimates for 2012
DOI: 10.6084/m9.figshare.7339427.v1
title: Local Authority District level expenditure estimates for 2013

description: Local Authority District level expenditure estimates for 2013
DOI: 10.6084/m9.figshare.7339430.v1
title: Local Authority District level expenditure estimates for 2012

description: Local Authority District level expenditure estimates for 2012
DOI: 10.7284/101959
title: Meteorological Station data collected during research cruise RR1004 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7339424
title: Local Authority District level expenditure estimates for 2009

description: Local Authority District level expenditure estimates for 2009
DOI: 10.6084/m9.figshare.7339424.v1
title: Local Authority District level expenditure estimates for 2009

description: Local Authority District level expenditure estimates for 2009
DOI: 10.7284/101963
title: Multibeam Echosounder data collected during research cruise RR1004 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/101965
title: Singlebeam Echosounder data collected during research cruise RR1004 using a Knudsen 320B/R instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7339334
title: Complete mitochondrial genome sequence of Labriocimbex sinicus, a new genus and new species of Cimbicidae (Hymenoptera) from China

description: <i>Labriocimbex sinicus</i> Yan & Wei gen. et sp. nov. of Cimbicidae is described. The new genus is similar to <i>Praia </i>Andre and <i>Trichiosoma</i> Leach. A key to extant Holarctic genera of Cimbicidae is provided. To identify the phylogenetic placement of Cimbicidae, the mitochondrial genome of <i>L. sinicus</i> was annotated and characterized using high-throughput sequencing data. The complete mitochondrial genome of <i>L. sinicus</i> was obtained with a length of 15,405 bp and a typical set of 37 genes (22 tRNAs, 13 PCGs, and two rRNAs). The results demonstrated that all PCGs were initiated by ATN codon, and ended with TAA or T stop codons. Remarkably, the secondary structures of the<i> rrnS</i> and <i>rrnL</i> of <i>L. sinicus</i> were much different from those of <i>Corynis lateralis</i>. Phylogenetic analyses verified the monophyly and positions of the three Cimbicidae species within the superfamily Tenthredinoidea and demonstrated a relationship as (Tenthredinidae + Cimbicidae) + (Argidae + Pergidae) with strong nodal supports. Furthermore, we found that the generic relationships of Cimbicidae revealed by the phylogenetic analyses based on <i>COI</i> genes agree quite closely with the systematic arrangement of the genera based on the morphological characters. Phylogenetic tree based on two methods shows that <i>L. sinicus</i> is the sister group of <i>Praia </i>with high support values. We suggest that <i>Labriocimbex </i>belongs to the tribe Trichiosomini of Cimbicinae based on adult morphology and molecular data. <br>
DOI: 10.7284/101990
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1005 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7339334.v1
title: Complete mitochondrial genome sequence of Labriocimbex sinicus, a new genus and new species of Cimbicidae (Hymenoptera) from China

description: <i>Labriocimbex sinicus</i> Yan & Wei gen. et sp. nov. of Cimbicidae is described. The new genus is similar to <i>Praia </i>Andre and <i>Trichiosoma</i> Leach. A key to extant Holarctic genera of Cimbicidae is provided. To identify the phylogenetic placement of Cimbicidae, the mitochondrial genome of <i>L. sinicus</i> was annotated and characterized using high-throughput sequencing data. The complete mitochondrial genome of <i>L. sinicus</i> was obtained with a length of 15,405 bp and a typical set of 37 genes (22 tRNAs, 13 PCGs, and two rRNAs). The results demonstrated that all PCGs were initiated by ATN codon, and ended with TAA or T stop codons. Remarkably, the secondary structures of the<i> rrnS</i> and <i>rrnL</i> of <i>L. sinicus</i> were much different from those of <i>Corynis lateralis</i>. Phylogenetic analyses verified the monophyly and positions of the three Cimbicidae species within the superfamily Tenthredinoidea and demonstrated a relationship as (Tenthredinidae + Cimbicidae) + (Argidae + Pergidae) with strong nodal supports. Furthermore, we found that the generic relationships of Cimbicidae revealed by the phylogenetic analyses based on <i>COI</i> genes agree quite closely with the systematic arrangement of the genera based on the morphological characters. Phylogenetic tree based on two methods shows that <i>L. sinicus</i> is the sister group of <i>Praia </i>with high support values. We suggest that <i>Labriocimbex </i>belongs to the tribe Trichiosomini of Cimbicinae based on adult morphology and molecular data. <br>
DOI: 10.7284/102103
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise RR1005 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/101986
title: Expendable Probe data collected during research cruise RR1005 using a Sippican MK21 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/101981
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1005 using a Furuno GP-90D instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/101982
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1005 using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/101987
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1005 using a MX Marine MX421 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/101983
title: Gravimeter data collected during research cruise RR1005 using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/101984
title: Meteorological Station data collected during research cruise RR1005 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7339043
title: Supplementary Material for: Long-Term Effect of Rifaximin with and without Lactulose on the Active Bacterial Assemblages in the Proximal Small Bowel and Faeces in Patients with Minimal Hepatic Encephalopathy

description: <b><i>Background:</i></b> Gut microbiota play an essential role in the pathogenesis of hepatic encephalopathy (HE). Treatment strategies are directed to modulate intestinal microbiota profiles and their function by the administration of the non-absorbable disaccharide lactulose and the non-absorbable antibiotic rifaximin, which are required for long terms, but little is known on their long-term effect on gut microbiota composition and function. <b><i>Aim:</i></b> To characterize the active bacterial assemblages in duodenum and faeces in patients with minimal HE (MHE) before, during and after long-term therapy with rifaximin. <b><i>Methods:</i></b> We analysed the microbiota composition in 5 patients with liver cirrhosis and MHE treated either with rifaximin 550 mg bid alone continuously for a period of 3 months or combined with lactulose 30–60 mL daily for 3 months. In addition to clinical assessments of HE, biopsies from duodenum and stool samples were analysed for their specific bacterial community applying NGS after RNA isolation before treatment, after 3 months of treatment and 3 months after the end of treatment. <b><i>Results:</i></b> All 5 patients had a significant improvement of their MHE. Bacterial communities were different and distinct in duodenal samples and faeces. No statistically significant changes were found in the bacterial community profile at the different time points. <b><i>Conclusion:</i></b> Rifaximin therapy with and without lactulose over a period of 3 months does not affect the bacterial community composition. The improvement of HE with rifaximin is lasting also after the end of treatment and therefore a prolonged effect on microbiota metabolic function is suggested.
DOI: 10.7284/101988
title: Multibeam Echosounder data collected during research cruise RR1005 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7339019
title: Supplementary Material for: A Prospective Study of Maternal Plasma Concentrations of Retinol-Binding Protein 4 and Risk of Gestational Diabetes Mellitus

description: <b><i>Background:</i></b> The aim of this study was to investigate whether retinol-binding protein 4 (RBP4) concentrations, measured at the first prenatal visit, are associated with risk of gestational diabetes mellitus (GDM). <b><i>Methods:</i></b> From July 2015 to June 2016, consecutive women who admitted to the obstetrics center of our hospital were included. At the first prenatal visit (the median gestational age was 6 [interquartile range 4–10] weeks) in the hospital, involved subjects were tested for fasting plasma glucose (FPG) and RBP4 using venous plasma samples collected after at least 8 h of fasting in the morning. Data for FPG and RBP4 concentrations at the first prenatal visit and one-step GDM screening with 75-g oral glucose tolerance test performed between 24 and 28 weeks of gestation were collected and analyzed. <b><i>Results:</i></b> Blood at first prenatal visit was available for 827 women, among whom GDM developed in 101 (12.2%). In multivariate models comparing the second (Q2), third, and fourth quartiles against the first quartile of RBP4, concentrations of RBP4 in Q2, Q3, and Q4 were associated with GDM later developed, and increased risk of GDM by 54, 205, and 536%. There was a significant statistical difference in the area under the curve between the established risk factors alone and the addition of RBP4 concentrations (difference, 0.039 [95% CI 0.030–0.052]; <i>p</i> = 0.03). In the subgroup of women combined with obesity and FABP4 ≥median, the measured OR was 9.83 (95% CI [4.76–16.13]; <i>p</i> &lt; 0.001) for GDM compared to those without obesity and FABP4 <i>Conclusions:</i> There is evidence of a positive association of early pregnancy elevated RBP4 concentration with increased GDM risk, particularly among women with advanced age and obesity.
DOI: 10.7284/101989
title: Singlebeam Echosounder data collected during research cruise RR1005 using a Knudsen 320B/R instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7339019.v1
title: Supplementary Material for: A Prospective Study of Maternal Plasma Concentrations of Retinol-Binding Protein 4 and Risk of Gestational Diabetes Mellitus

description: <b><i>Background:</i></b> The aim of this study was to investigate whether retinol-binding protein 4 (RBP4) concentrations, measured at the first prenatal visit, are associated with risk of gestational diabetes mellitus (GDM). <b><i>Methods:</i></b> From July 2015 to June 2016, consecutive women who admitted to the obstetrics center of our hospital were included. At the first prenatal visit (the median gestational age was 6 [interquartile range 4–10] weeks) in the hospital, involved subjects were tested for fasting plasma glucose (FPG) and RBP4 using venous plasma samples collected after at least 8 h of fasting in the morning. Data for FPG and RBP4 concentrations at the first prenatal visit and one-step GDM screening with 75-g oral glucose tolerance test performed between 24 and 28 weeks of gestation were collected and analyzed. <b><i>Results:</i></b> Blood at first prenatal visit was available for 827 women, among whom GDM developed in 101 (12.2%). In multivariate models comparing the second (Q2), third, and fourth quartiles against the first quartile of RBP4, concentrations of RBP4 in Q2, Q3, and Q4 were associated with GDM later developed, and increased risk of GDM by 54, 205, and 536%. There was a significant statistical difference in the area under the curve between the established risk factors alone and the addition of RBP4 concentrations (difference, 0.039 [95% CI 0.030–0.052]; <i>p</i> = 0.03). In the subgroup of women combined with obesity and FABP4 ≥median, the measured OR was 9.83 (95% CI [4.76–16.13]; <i>p</i> &lt; 0.001) for GDM compared to those without obesity and FABP4 <i>Conclusions:</i> There is evidence of a positive association of early pregnancy elevated RBP4 concentration with increased GDM risk, particularly among women with advanced age and obesity.
DOI: 10.6084/m9.figshare.7338992
title: Information flow reveals prediction limits in online social activity

description: Data supporting the study, "Information flow reveals prediction limits in online social activity".
DOI: 10.7284/101980
title: Winch data collected during research cruise RR1005 using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7338953
title: database reacties op immunotherapie.xlsx

description: dataset of side effects after rush immunotherapy relevant to:<br> Rush immunotherapy with multiple aeroallergens is safe in an adult population*<br>Wytske Fokkens1, Maurits van Maaren2, Marije Wolvers1, Roy Gerth van Wijk2<br> Rhinology Online, Volume 1: 35 - 37, 2018
DOI: 10.6084/m9.figshare.7338953.v1
title: database reacties op immunotherapie.xlsx

description: dataset of side effects after rush immunotherapy relevant to:<br> Rush immunotherapy with multiple aeroallergens is safe in an adult population*<br>Wytske Fokkens1, Maurits van Maaren2, Marije Wolvers1, Roy Gerth van Wijk2<br> Rhinology Online, Volume 1: 35 - 37, 2018
DOI: 10.7284/101955
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1006 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7338938
title: Visual Abstract CKD Suriname

description: This is a visual abstract of the paper: "Chronic kidney disease and kidney health care status: the healthy lifein Suriname (HeliSur) study"<br>Nannan Panday R, Haan Y, Diemer F, Punwasi A, Rommy C, Heerenveen I, van Montfrans GA, Brewster LM.Intern Emerg Med. 2018 Oct 26. doi: 10.1007/s11739-018-1962-3.<br>AbstractThe high cardiovascular risk burden in low- and middle-income countries is expected to lead to an explosive increase in chronic kidney disease (CKD). However, population data on CKD from these countries are scarce. Therefore, we assessed kidney health in Suriname. In the Healthy Life in Suriname (HeliSur) study, a random sample of the adult population, we collected data with standardized questionnaires, physical examination, and blood and urine samples analysed in a central laboratory. Prevalent CKD was graded with KDIGO guidelines. In addition, we assessed national data on prevalent renal replacement therapy (RRT), estimated the future need for RRT, and evaluated national kidney health work force and policies.We include 1117 participants (2.0‰ of the population), 63% women, 40% of African ancestry and 43% of Asian ancestry,with a mean age of 42.2 (SE 0.4) years. Blood pressure is elevated in 72% of the participants, 26% have diabetes or prediabetes, and 78% are obese or overweight. The prevalence of CKD is 5.4%, and around 0.3% have kidney failure, translating to approximately 1500 patients nationally (2690 per million population, pmp), with currently 516 patients (920 pmp) on dialysis.Based on the participants from the random population sample in CKD stage G3 or G4, we estimate that 6750–10,750 pmp may develop kidney failure within the next 10 years. However, specialized kidney health workforce is currently very limited, and specific national or local policies for CKD management are lacking. Since the large majority of the general population has one or more risk factors for CKD including elevated blood pressure, urgent action is needed to strengthen kidney health care and prevent a catastrophic rise in need for RRT in the coming years.<br>Keywords Cardiovascular risk factors · Chronic kidney disease · Renal replacement therapy · Low- and middle-income countries · Kidney health care
DOI: 10.7284/101952
title: Expendable Probe data collected during research cruise RR1006 using a Sippican MK21 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition