cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18042634
title: Table 3. Genetic distances. Uncorrected p in Resolving a taxonomic and nomenclatural puzzle in mantellid frogs: synonymization of Gephyromantis azzurrae with G. corvus, and description of Gephyromantis kintana sp. nov. from the Isalo Massif, western Madagascar

description: Table 3. Genetic distances. Uncorrected p-distance (transformed into percent) matrix between and within (on the diagonal and in bold) species of the subgenus Phylacomantis, for the analysed 16S fragment.
G. corvusG. kintanaG. atsingyG. pseudoasperG. corvus0.38 %G. kintana9.90%0.06 %G. atsingy12.45%10.68%0.76 %G. pseudoasper14.89%13.42%12.40%1.36 %
description: Published as part of Cocca, Walter, Andreone, Franco, Belluardo, Francesco, Rosa, Goncalo M., Randrianirina, Jasmin E., Glaw, Frank & Crottini, Angelica, 2020, Resolving a taxonomic and nomenclatural puzzle in mantellid frogs: synonymization of Gephyromantis azzurrae with G. corvus, and description of Gephyromantis kintana sp. nov. from the Isalo Massif, western Madagascar, pp. 133 in ZooKeys 951 on page 133, DOI: 10.3897/zookeys.951.51129
DOI: 10.15468/ygay4b
title: Forgotten for two centuries: redescription of Phoxinus isetensis (Georgi, 1775) (Cypriniformes, Leuciscidae) – the most widespread minnow in Europe

description: This dataset contains the digitized treatments in Plazi based on the original journal article Artaev, Oleg N., Bolotovskiy, Aleksey A., Turbanov, Ilya S., Gandlin, Alexander A., Kutuzov, Aleksey V., Levina, Marina A., Melentev, Danila A., Pozdeev, Ivan V., Borisov, Mikhail Ya., Levin, Boris A. (2024): Forgotten for two centuries: redescription of Phoxinus isetensis (Georgi, 1775) (Cypriniformes, Leuciscidae) – the most widespread minnow in Europe. Zoosystematics and Evolution 100 (3): 1155-1173, DOI: 10.3897/zse.100.126702AbstractThe morphology, phylogenetic position, and distribution of a recently revalidated species of leuciscid minnow, Phoxinus isetensis, were substantially clarified. The species was described in the late 18 th century from the Middle Urals but later synonymized with Phoxinus phoxinus. As believed, P. isetensis is distributed in the Arctic Ocean catchment from the Murman coast via West and East Siberia until the Pacific Ocean catchment in Far East and Northeastern Asia. Our study, with the use of mtDNA markers coupled with extensive morphological data, showed that the distribution of P. isetensis is greatly different. Currently, this is the most widespread Phoxinus species in Europe, distributed in Northern and Western Europe and on the eastern edge of Siberia (Iset and Ural basins). In particular, P. isetensis inhabits the basins of the Caspian, Baltic, White, Barents, and Kara seas, possibly occurring in the North Sea basin. The species was redescribed, and the type locality and neotype were designated. The main morphological difference from other Phoxinus spp. is the large total number of vertebrae (39–43, mode 41) due to an increase in the number of caudal vertebrae (16–21, mode 19). Phylogenetically, P. isetensis is a sister to the Caucasian species P. colchicus (p - distance = 5 %). The wide distribution of P. isetensis within the area of the Last Glacial Maximum suggests rapid colonization of deglaciated regions, probably due to its adaptation to a cold climate.
DOI: 10.13140/rg.2.2.30504.02561
title: Kuwait Annual Earthquake Bulletin 2024
DOI: 10.15468/stvhgb
title: A remarkable new species of the genus Psammoecus Latreille (Coleoptera, Silvanidae) from Lord Howe Island, Australia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Yoshida, Takahiro, Reid, Chris A. M. (2023): A remarkable new species of the genus Psammoecus Latreille (Coleoptera, Silvanidae) from Lord Howe Island, Australia. ZooKeys 1161: 117-127, DOI: http://dx.doi.org/10.3897/zookeys.1161.100872, URL: http://dx.doi.org/10.3897/zookeys.1161.100872
DOI: 10.7910/dvn/6gbd8r
title: Replication Data for: Organizational Bricolage and Insurgent Group Effectiveness in Cities: The Formation and Initial Urban Campaign of the Movement of the 19th of April in Colombia (1973–1980)

description: How do rebel groups form in cities? What makes urban-based insurgent organizations effective? Urban armed conflicts have become an important subject of research due to the political, economic, and demographic significance of cities. Yet, we know little about the mechanisms of insurgent group formation and effectiveness in urban contexts. Building on the case of the formation and initial urban campaign of M-19 in Colombia (1973–1980), this article argues that rebel leaders originating from multiple organizations and confronted with intramovement competition have strong motives to employ organizational bricolage to form their organization. Organizational bricolage shapes insurgent effectiveness by producing structures that are fit for achieving certain objectives but not others. M-19’s organizational bricolage combined the armed vanguard, intellectual collective, and populist party forms. This structure was effective to foster public support but ineffective to establish a robust social base and maintain urban operations under repression. The research employs the analysis of organizational repertoires and process tracing to retrace M-19’s formation and initial urban campaign. Empirical material includes an original dataset comprising M-19 founders’ biographical data, archival documents, and interviews with ex-combatants. Studying how rebel leaders employ organizational bricolage sheds light on how insurgent organizations form, behave, and transform after war.
DOI: 10.15468/4atn3c
title: A new species of Metanarsia Staudinger, 1871 (Lepidoptera, Gelechiidae) from Morocco

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bidzilya, Oleksiy V. (2022): A new species of Metanarsia Staudinger, 1871 (Lepidoptera, Gelechiidae) from Morocco. Nota Lepidopterologica 45: 295-303, DOI: http://dx.doi.org/10.3897/nl.45.95198, URL: http://dx.doi.org/10.3897/nl.45.95198
DOI: 10.15468/9f5zjm
title: Info Flora Schweiz - Osmundaceae

description: This dataset contains the digitized treatments in Plazi based on the original url / website Info Flora (2021): Info Flora Schweiz - Osmundaceae., URL: https://www.infoflora.ch/de/flora/osmundaceae.html
DOI: 10.15468/ahrqji
title: Sopra alcuni miriapodi cavernicoli italiani raccolti dai Sign. A. Vacca e R. Barberi

description: This dataset contains the digitized treatments in Plazi based on the original journal article R. Latzel (1889): Sopra alcuni miriapodi cavernicoli italiani raccolti dai Sign. A. Vacca e R. Barberi. Annali del Museo Civico di Storia Naturale di Genova 27: 360-362, URL: http://un.availab.le
DOI: 10.15468/z36bz5
title: A third species of glassfrog in the genus Chimerella (Anura, Centrolenidae) from central Peru, discovered by an integrative taxonomic approach

description: This dataset contains the digitized treatments in Plazi based on the original journal article Koehler, Joern, Venegas, Pablo J., Castillo-Urbina, Ernesto, Glaw, Frank, Aguilar-Puntriano, Cesar, Vences, Miguel (2023): A third species of glassfrog in the genus Chimerella (Anura, Centrolenidae) from central Peru, discovered by an integrative taxonomic approach. Evolutionary Systematics 7 (2): 195-209, DOI: http://dx.doi.org/10.3897/evolsyst.7.102950, URL: http://dx.doi.org/10.3897/evolsyst.7.102950
DOI: 10.15468/bak73j
title: A new species of Tarphius Erichson, 1845 (Coleoptera: Zopheridae) from Iran

description: This dataset contains the digitized treatments in Plazi based on the original journal article Müller, Jörg, Schuh, Rudolf (2021): A new species of Tarphius Erichson, 1845 (Coleoptera: Zopheridae) from Iran. Zootaxa 5005 (3): 375-380, DOI: 10.11646/zootaxa.5005.3.12AbstractThe Hyrcanian Forest, located south of the Caspian Sea, represents a remarkably intact temperate forest ecosystem containing large numbers of endemic plants and animals, including beetles. Here we describe a new species of Tarphius Erichson, 1845 (Coleoptera: Zopheridae Solier, 1834) as the currently most eastern Tarphius species known. Tarphius hyrcanicus n. sp. is the first Tarphius species recorded from the Middle East. Its habitat and geographic positions are also reported. The discovery of this presumably endemic species in the Hyrcanian Forest underlines the importance of this Tertiary forest relict in the conservation of the biodiversity of temperate forests.
DOI: 10.15468/7mwu9e
title: A new species of Astrochapsa (Graphidaceae) from Martinique, with a world-wide key to the species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Borgato, Luca, Ertz, Damien (2018): A new species of Astrochapsa (Graphidaceae) from Martinique, with a world-wide key to the species. Phytotaxa 371 (2): 102-110, DOI: 10.11646/phytotaxa.371.2.4, URL: http://dx.doi.org/10.11646/phytotaxa.371.2.4AbstractAstrochapsa martinicensis is described as new to science. It is characterized by a whitish-farinose thallus, 6–8-spored asci, (4–)5–7(–9)-septate ascospores of (12.5–)14–24(–29) × (4.5–)5–6.5(–7) μm and a chemistry with one terpenoid and traces of UV + substances. The new species was discovered among lichen specimens collected in 2013 on the island of Martinique (Lesser Antilles). A phylogenetic analysis using nuLSU sequences places the new species in the genus Astrochapsa, as sister species to an unidentified specimen from Venezuela. An identification key to all currently accepted Astrochapsa species is provided.
DOI: 10.15468/gmjz45
title: Salvia glabrifolia (Lamiaceae), a new species from Hunan, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Cheng, Ke-Yi, Zhang, Ting, Xie, Chu-Miao, Dai, Jing-Min, Huang, Ming-Hao, Meng, Ying, Tian, Xiang-Rong, Zhang, Dai-Gui, Long, Xiu-Ji, Zhang, Meng-Hua (2024): Salvia glabrifolia (Lamiaceae), a new species from Hunan, China. Phytotaxa 658 (2): 165-177, DOI: 10.11646/phytotaxa.658.2.4, URL: http://dx.doi.org/10.11646/phytotaxa.658.2.4AbstractBased on molecular and morphological evidence, a new species of Salvia (Lamiaceae), Salvia glabrifolia D.G. Zhang & X.J. Long, from Hunan Province, China, is described and illustrated. Salvia glabrifolia is morphologically similar to S. cavaleriei var. simplicifolia, S. daiguii, and S. cavaleriei var. cavaleriei but is distinct by its glabrous stem, petioles, veins, inflorescence axis, leaf margin repand, and glossy and subleathery leaf texture. Maximum likelihood (ML) analyses of the whole plastome dataset strongly supported S. glabrifolia as a sister to the S. japonica-S. liguliloba clade. Moreover, the chromosome number of S. glabrifolia, 2n = 16, is the same as other species in S. chinensis group.
DOI: 10.6084/m9.figshare.30817745
title: Novel miRNA set for screening gastric cancer with high sensitivity: an ROC analysis of 6,997 samples

description: Cancer screening is essential for reducing GC-associated deaths. Nonetheless, implementing population-based screening strategies poses challenges. In this study, a comprehensive receiver operating characteristic (ROC) analysis was conducted on 2565 microRNAs (miRNAs) from 6997 samples to identify a classifier for GC screening. First, batch effects were corrected across the five Gene Expression Omnibus Series (GSE) datasets. Second, a predictive model was established using the incidence method. Finally, this model was validated using randomly selected datasets, all datasets after batch effect removal, and each of the datasets separately. Six miRNAs, namely miR-1290, miR-5100, miR-1343-3p, miR-8073, miR-4706, and miR-4787-3p were identified, with an area under the ROC curve (AUC) of 0.990 ± 0.002, 0.993 ± 0.002, 0.996 ± 0.004, 0.978 ± 0.010, 0.957 ± 0.015, and 0.969 ± 0.015, respectively. The miRNA set obtained by combining the six miRNAs yielded an AUC of 0.997 ± 0.001, which was higher than that of the six individual miRNAs (<i>p</i> &lt; 0.001). Validation across the total dataset and five GSE datasets (GSE106817, GSE112264, GSE113486, GSE113740, and GSE164174) yielded AUCs of 0.997, 0.999, 1.000, 1.000, 0.996, and 0.994, respectively. The novel miRNA set comprising miR-1290, miR-5100, miR-1343-3p, miR-8073, miR-4706, and miR-4787-3p holds promise as a diagnostic classifier for GC screening.
DOI: 10.6084/m9.figshare.30817745.v1
title: Novel miRNA set for screening gastric cancer with high sensitivity: an ROC analysis of 6,997 samples

description: Cancer screening is essential for reducing GC-associated deaths. Nonetheless, implementing population-based screening strategies poses challenges. In this study, a comprehensive receiver operating characteristic (ROC) analysis was conducted on 2565 microRNAs (miRNAs) from 6997 samples to identify a classifier for GC screening. First, batch effects were corrected across the five Gene Expression Omnibus Series (GSE) datasets. Second, a predictive model was established using the incidence method. Finally, this model was validated using randomly selected datasets, all datasets after batch effect removal, and each of the datasets separately. Six miRNAs, namely miR-1290, miR-5100, miR-1343-3p, miR-8073, miR-4706, and miR-4787-3p were identified, with an area under the ROC curve (AUC) of 0.990 ± 0.002, 0.993 ± 0.002, 0.996 ± 0.004, 0.978 ± 0.010, 0.957 ± 0.015, and 0.969 ± 0.015, respectively. The miRNA set obtained by combining the six miRNAs yielded an AUC of 0.997 ± 0.001, which was higher than that of the six individual miRNAs (<i>p</i> &lt; 0.001). Validation across the total dataset and five GSE datasets (GSE106817, GSE112264, GSE113486, GSE113740, and GSE164174) yielded AUCs of 0.997, 0.999, 1.000, 1.000, 0.996, and 0.994, respectively. The novel miRNA set comprising miR-1290, miR-5100, miR-1343-3p, miR-8073, miR-4706, and miR-4787-3p holds promise as a diagnostic classifier for GC screening.
DOI: 10.6084/m9.figshare.30861447
title: Development of a novel diagnostic model integrating microRNAs and GALAD for HBV-related hepatocellular carcinoma

description: As primary hepatocellular carcinoma (HCC) is a prevalent digestive tract malignancy, identifying novel biomarkers for early diagnosis and prognosis is crucial. This study combined specific miRNAs with the GALAD model to create a new diagnostic model for hepatitis B virus (HBV)-related HCC. From 2020 to 2022, 884 patients from Zhongshan Hospital were enrolled, including 430 HBV-related HCC, 275 HBV-related chronic liver disease (CLD), and 179 healthy donors (HD). Stepwise regression selected features, and multivariable logistic regression built the GALADM model. A nomogram integrating age, gender, serum markers, and a score derived from seven plasma cell-free microRNAs (miRNA7) was developed. MiRNA7 value was higher in HCC patients and rose with disease progression. The GALADM model showed superior diagnostic performance, with AUCs of 0.87, 0.96, and 0.90 when distinguishing HCC from CLD, HD, and CLD+HD, outperforming the GALAD model and single markers. It also excelled in diagnosing early-stage and Alpha-fetoprotein (AFP)-negative HCC. The nomogram had an AUC of 0.977 and proved clinically useful. The GALADM model, combining miRNA7 with the GALAD model, surpasses the original GALAD model, enabling early-stage and AFP-negative HCC diagnosis.
DOI: 10.6084/m9.figshare.30861447.v1
title: Development of a novel diagnostic model integrating microRNAs and GALAD for HBV-related hepatocellular carcinoma

description: As primary hepatocellular carcinoma (HCC) is a prevalent digestive tract malignancy, identifying novel biomarkers for early diagnosis and prognosis is crucial. This study combined specific miRNAs with the GALAD model to create a new diagnostic model for hepatitis B virus (HBV)-related HCC. From 2020 to 2022, 884 patients from Zhongshan Hospital were enrolled, including 430 HBV-related HCC, 275 HBV-related chronic liver disease (CLD), and 179 healthy donors (HD). Stepwise regression selected features, and multivariable logistic regression built the GALADM model. A nomogram integrating age, gender, serum markers, and a score derived from seven plasma cell-free microRNAs (miRNA7) was developed. MiRNA7 value was higher in HCC patients and rose with disease progression. The GALADM model showed superior diagnostic performance, with AUCs of 0.87, 0.96, and 0.90 when distinguishing HCC from CLD, HD, and CLD+HD, outperforming the GALAD model and single markers. It also excelled in diagnosing early-stage and Alpha-fetoprotein (AFP)-negative HCC. The nomogram had an AUC of 0.977 and proved clinically useful. The GALADM model, combining miRNA7 with the GALAD model, surpasses the original GALAD model, enabling early-stage and AFP-negative HCC diagnosis.
DOI: 10.6084/m9.figshare.30813220
title: Meta-analysis of preoperative CALLY index for predicting the prognosis of cancer

description: This study aims to evaluate the predictive value of the CALLY index in cancer prognosis via systematic review and meta-analysis. PubMed, Web of Science, Embase, and Cochrane were searched up to November 2024. Study quality was evaluated using the Newcastle-Ottawa Scale (NOS), and meta-analysis was performed with STATA 17.0. Among 21 cohort studies,the findings indicated that, regarding overall survival (OS), a low CALLY index was correlated with a 113% elevated likelihood of all-cause mortality compared to those with a higher CALLY index (risk ratio [RR] = 0.47, 95% confidence intervals [95%CI]: 0.42–0.53). An 85% elevated risk of disease-free survival (DFS) and relapse-free survival (RFS) was observed in individuals with a low CALLY index (pooled RR = 0.54, 95%CI: 0.46–0.63). Moreover, a lower CALLY index was correlated with a significantly greater tumor burden (standardized mean difference (SMD) = -0.64, 95%CI: −0.76–0.52). The stage-specific analysis demonstrated that a low CALLY index significantly increased the risk of cancer progression by 54% in individuals at stage II (RR = 0.65, 95%CI: 0.43–0.98) and by 67% in individuals at stage III (RR = 0.60, 95%CI: 0.43–0.86). The CALLY index independently predicts adverse cancer outcomes.
DOI: 10.6084/m9.figshare.30813220.v1
title: Meta-analysis of preoperative CALLY index for predicting the prognosis of cancer

description: This study aims to evaluate the predictive value of the CALLY index in cancer prognosis via systematic review and meta-analysis. PubMed, Web of Science, Embase, and Cochrane were searched up to November 2024. Study quality was evaluated using the Newcastle-Ottawa Scale (NOS), and meta-analysis was performed with STATA 17.0. Among 21 cohort studies,the findings indicated that, regarding overall survival (OS), a low CALLY index was correlated with a 113% elevated likelihood of all-cause mortality compared to those with a higher CALLY index (risk ratio [RR] = 0.47, 95% confidence intervals [95%CI]: 0.42–0.53). An 85% elevated risk of disease-free survival (DFS) and relapse-free survival (RFS) was observed in individuals with a low CALLY index (pooled RR = 0.54, 95%CI: 0.46–0.63). Moreover, a lower CALLY index was correlated with a significantly greater tumor burden (standardized mean difference (SMD) = -0.64, 95%CI: −0.76–0.52). The stage-specific analysis demonstrated that a low CALLY index significantly increased the risk of cancer progression by 54% in individuals at stage II (RR = 0.65, 95%CI: 0.43–0.98) and by 67% in individuals at stage III (RR = 0.60, 95%CI: 0.43–0.86). The CALLY index independently predicts adverse cancer outcomes.
DOI: 10.15468/ped78m
title: A new and exceptional species of Bradya Boeck, 1873 (Copepoda: Harpacticoida: Ectinosomatidae) from the abyssal plain of the Angola Basin and the variability of deep-sea Harpacticoida *

description: This dataset contains the digitized treatments in Plazi based on the original journal article Seifried, Sybille, Arbizu, Pedro Martínez, ‘‘, Rrs (2008): A new and exceptional species of Bradya Boeck, 1873 (Copepoda: Harpacticoida: Ectinosomatidae) from the abyssal plain of the Angola Basin and the variability of deep-sea Harpacticoida *. Zootaxa 1866 (1): 303-322, DOI: 10.11646/zootaxa.1866.1.15, URL: https://biotaxa.org/Zootaxa/article/view/zootaxa.1866.1.15AbstractBradya kurtschminkei sp. nov. is described from deep­sea samples collected from the Angola Basin (Southeast Atlantic) during the DIVA 1 campaign in 2000, the Guinea and Cape Basins (Southeast Atlantic) during the DIVA 2 campaign in 2005, and the Porcupine Abyssal Plain (Northeast Atlantic) during the RRS‘ ‘ Challenger’’ cruise 111 in 1994. B. kurtschminkei sp. nov. is exceptional because of many characters, hitherto unknown from other Bradya species. B. kurtschminkei sp. nov. can be distinguished from its congeners by its unique habitus as the body is slightly flattened dorso­ventrally and the female cephalothorax is almost as long as the free pedigerous somites and the urosome together. The rostrum’s length is a third of the cephalothorax length and it tapers to a point. The antennule is 5­segmented, the basis of maxillule is fused with exopod and endopod, and the endopod has only four setae. The endopod of maxilla has only one large claw, the exopod of the P5 is short, its distal end reaches to the distal end of the baseoendopod, and the outer seta of the baseoendopod has a double tip. The armature formula of P1–P4 is exceptional as there are in total seven setae less on the endopods than in all other species of Bradya. Like many other deep­sea Harpacticoida, B. kurtschminkei sp. nov. shows compared with shallow waters species a remarkable, as yet unknown morphological variability.
DOI: 10.15468/9vjz8t
title: Taxonomy of the genus Begonia (Begoniaceae) in Mindanao, Philippines IV: Begonia bangsamoro subsp. bagasa (Begonia section Petermannia), a new subspecies from Zamboanga del Sur

description: This dataset contains the digitized treatments in Plazi based on the original journal article Naive, Mark Arcebal K., Calimbo, Liberty Grace L., Cudal, Maricris G., Alejandro, Grecebio Jonathan D., Yu, Wen-Bin (2022): Taxonomy of the genus Begonia (Begoniaceae) in Mindanao, Philippines IV: Begonia bangsamoro subsp. bagasa (Begonia section Petermannia), a new subspecies from Zamboanga del Sur. Phytotaxa 559 (1): 88-94, DOI: 10.11646/phytotaxa.559.1.10, URL: http://dx.doi.org/10.11646/phytotaxa.559.1.10AbstractA subspecies new to science, Begonia bangsamoro subsp. bagasa Naive (section Petermannia) discovered in Zamboanga del Sur, Western Mindanao, Philippines is herewith described and illustrated. The new subspecies differs significantly from the type subspecies in having staminate and pistillate flowers with very narrow tepals. A colour plate, notes on its distribution, habitat, phenology, proposed conservation assessment based on IUCN criteria as well as a checklist of Begonia species present in Zamboanga Peninsula are provided. With this discovery, Zamboanga Peninsula now holds a total of 17 Begonia taxa, and the very first subspecies described for the Philippine archipelago.
DOI: 10.15468/15ybm1
title: Arthropoden aus südostalpinen Höhlen.

description: This dataset contains the digitized treatments in Plazi based on the original journal article K. W. Verhoeff (1929): Arthropoden aus südostalpinen Höhlen. Mitteilungen über Höhlen- und Karstforschung 1929: 41-55, URL: http://un.availb.le
DOI: 10.15468/tmxrwa
title: Über einige nordafrikanische Chilopoden

description: This dataset contains the digitized treatments in Plazi based on the original journal article C. Verhoeff (1891): Über einige nordafrikanische Chilopoden. Berliner Entomologische Zeitschrift 36: 65-70, URL: http://un.avilab.le