cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12954855
title: PCNA promotes context-specific sister chromatid cohesion establishment separate from that of chromatin condensation

description: Cellular genomes undergo various structural changes that include <i>cis</i> tethering (the tethering together of two loci within a single DNA molecule), which promotes chromosome condensation and transcriptional activation, and <i>trans</i> tethering (the tethering together of two DNA molecules), which promotes sister chromatid cohesion and DNA repair. The protein complex termed cohesin promotes both <i>cis</i> and <i>trans</i> forms of DNA tethering, but the extent to which these cohesin functions occur in temporally or spatially defined contexts remains largely unknown. Prior studies indicate that DNA polymerase sliding clamp PCNA recruits cohesin acetyltransferase Eco1, suggesting that sister chromatid cohesion is established in the context of the DNA replication fork. In support of this model, elevated levels of PCNA rescue the temperature growth and cohesion defects exhibited by <i>eco1</i> mutant cells. Here, we test whether Eco1-dependent chromatin condensation is also promoted in the context of this DNA replication fork component. Our results reveal that overexpressed PCNA does not promote DNA condensation in <i>eco1</i> mutant cells, even though Smc3 acetylation levels are increased. We further provide evidence that replication fork-associated E3 ligase impacts on Eco1 are more complex that previously described. In combination, the data suggests that Eco1 acetylates Smc3 and thus promotes sister chromatid cohesion in context of the DNA replication fork, whereas a distinct cohesin population participates in chromatin condensation outside the context of the DNA replication fork.
DOI: 10.6084/m9.figshare.12954855.v3
title: PCNA promotes context-specific sister chromatid cohesion establishment separate from that of chromatin condensation

description: Cellular genomes undergo various structural changes that include <i>cis</i> tethering (the tethering together of two loci within a single DNA molecule), which promotes chromosome condensation and transcriptional activation, and <i>trans</i> tethering (the tethering together of two DNA molecules), which promotes sister chromatid cohesion and DNA repair. The protein complex termed cohesin promotes both <i>cis</i> and <i>trans</i> forms of DNA tethering, but the extent to which these cohesin functions occur in temporally or spatially defined contexts remains largely unknown. Prior studies indicate that DNA polymerase sliding clamp PCNA recruits cohesin acetyltransferase Eco1, suggesting that sister chromatid cohesion is established in the context of the DNA replication fork. In support of this model, elevated levels of PCNA rescue the temperature growth and cohesion defects exhibited by <i>eco1</i> mutant cells. Here, we test whether Eco1-dependent chromatin condensation is also promoted in the context of this DNA replication fork component. Our results reveal that overexpressed PCNA does not promote DNA condensation in <i>eco1</i> mutant cells, even though Smc3 acetylation levels are increased. We further provide evidence that replication fork-associated E3 ligase impacts on Eco1 are more complex that previously described. In combination, the data suggests that Eco1 acetylates Smc3 and thus promotes sister chromatid cohesion in context of the DNA replication fork, whereas a distinct cohesin population participates in chromatin condensation outside the context of the DNA replication fork.
DOI: 10.2908/rail_tf_ns15_uk
title: Zugbewegungen auf dem Schienennetzwerk - Vereinigtes Königreich (2015)
title: Trafic ferroviaire sur le réseau ferré - Royaume-Uni (2015)
title: Train traffic on the rail network - United Kingdom (2015)
DOI: 10.2908/rail_tf_ns_at
title: Train traffic on the rail network - Austria (2005)
title: Zugbewegungen auf dem Schienennetzwerk - Österreich (2005)
title: Trafic ferroviaire sur le réseau ferré - Austria (2005)
DOI: 10.6084/m9.figshare.12954855.v2
title: PCNA promotes context-specific sister chromatid cohesion establishment separate from that of chromatin condensation

description: Cellular genomes undergo various structural changes that include <i>cis</i> tethering (the tethering together of two loci within a single DNA molecule), which promotes chromosome condensation and transcriptional activation, and <i>trans</i> tethering (the tethering together of two DNA molecules), which promotes sister chromatid cohesion and DNA repair. The protein complex termed cohesin promotes both <i>cis</i> and <i>trans</i> forms of DNA tethering, but the extent to which these cohesin functions occur in temporally or spatially defined contexts remains largely unknown. Prior studies indicate that DNA polymerase sliding clamp PCNA recruits cohesin acetyltransferase Eco1, suggesting that sister chromatid cohesion is established in the context of the DNA replication fork. In support of this model, elevated levels of PCNA rescue the temperature growth and cohesion defects exhibited by <i>eco1</i> mutant cells. Here, we test whether Eco1-dependent chromatin condensation is also promoted in the context of this DNA replication fork component. Our results reveal that overexpressed PCNA does not promote DNA condensation in <i>eco1</i> mutant cells, even though Smc3 acetylation levels are increased. We further provide evidence that replication fork-associated E3 ligase impacts on Eco1 are more complex that previously described. In combination, the data suggests that Eco1 acetylates Smc3 and thus promotes sister chromatid cohesion in context of the DNA replication fork, whereas a distinct cohesin population participates in chromatin condensation outside the context of the DNA replication fork.
DOI: 10.2908/rail_tf_ns_be
title: Trafic ferroviaire sur le réseau ferré - Belgique (2005)
title: Zugbewegungen auf dem Schienennetzwerk - Belgien (2005)
title: Train traffic on the rail network - Belgium (2005)
DOI: 10.2908/rail_tf_ns_cz
title: Trafic ferroviaire sur le réseau ferré - République tchèque (2005)
title: Zugbewegungen auf dem Schienennetzwerk - Tschechische Republik (2005)
title: Train traffic on the rail network - Czech Republic (2005)
DOI: 10.2908/rail_tf_ns_de
title: Train traffic on the rail network - Germany (2005)
title: Zugbewegungen auf dem Schienennetzwerk - Deutschland (2005)
title: Trafic ferroviaire sur le réseau ferré - Allemagne (2005)
DOI: 10.2908/rail_tf_ns_dk
title: Zugbewegungen auf dem Schienennetzwerk - Dänemark (2005)
title: Trafic ferroviaire sur le réseau ferré - Danemark (2005)
title: Train traffic on the rail network - Denmark (2005)
DOI: 10.2908/rail_tf_ns_ee
title: Zugbewegungen auf dem Schienennetzwerk - Estland (2005)
title: Trafic ferroviaire sur le réseau ferré - Estonie (2005)
title: Train traffic on the rail network - Estonia (2005)
DOI: 10.2908/rail_tf_ns_el
title: Zugbewegungen auf dem Schienennetzwerk - Griechenland (2005)
title: Trafic ferroviaire sur le réseau ferré - Grèce (2005)
title: Train traffic on the rail network - Greece (2005)
DOI: 10.2908/rail_tf_ns_es
title: Trafic ferroviaire sur le réseau ferré - Espagne (2005)
title: Zugbewegungen auf dem Schienennetzwerk - Spanien (2005)
title: Train traffic on the rail network - Spain (2005)
DOI: 10.2908/rail_tf_ns_fi
title: Trafic ferroviaire sur le réseau ferré - Finlande (2005)
title: Train traffic on the rail network - Finland (2005)
title: Zugbewegungen auf dem Schienennetzwerk - Finnland (2005)
DOI: 10.2908/rail_tf_ns_fr
title: Zugbewegungen auf dem Schienennetzwerk - Frankreich (2005)
title: Train traffic on the rail network - France (2005)
title: Trafic ferroviaire sur le réseau ferré - France (2005)
DOI: 10.2908/rail_tf_ns_hu
title: Trafic ferroviaire sur le réseau ferré - Hongrie (2005)
title: Zugbewegungen auf dem Schienennetzwerk - Ungarn (2005)
title: Train traffic on the rail network - Hungaria (2005)
DOI: 10.2908/rail_tf_ns_ie
title: Trafic ferroviaire sur le réseau ferré - Irlande (2005)
title: Zugbewegungen auf dem Schienennetzwerk - Irland (2005)
title: Train traffic on the rail network - Ireland (2005)
DOI: 10.2908/rail_tf_ns_it
title: Zugbewegungen auf dem Schienennetzwerk - Italien (2005)
title: Trafic ferroviaire sur le réseau ferré - Italie (2005)
title: Train traffic on the rail network - Italia (2005)
DOI: 10.2908/rail_tf_ns_li
title: Zugbewegungen auf dem Schienennetzwerk - Liechtenstein (2005)
title: Train traffic on the rail network - Liechtenstein (2005)
title: Trafic ferroviaire sur le réseau ferré - Liechtenstein (2005)
DOI: 10.2908/rail_tf_ns_lt
title: Trafic ferroviaire sur le réseau ferré - Lituanie (2005)
title: Zugbewegungen auf dem Schienennetzwerk - Litauen (2005)
title: Train traffic on the rail network - Lithuania (2005)
DOI: 10.2908/rail_tf_ns_lu
title: Zugbewegungen auf dem Schienennetzwerk - Luxemburg (2005)
title: Train traffic on the rail network - Luxembourg (2005)
title: Trafic ferroviaire sur le réseau ferré - Luxembourg (2005)
DOI: 10.2908/rail_tf_ns_lv
title: Train traffic on the rail network - Latvia (2005)
title: Trafic ferroviaire sur le réseau ferré - Lettonie (2005)
title: Zugbewegungen auf dem Schienennetzwerk - Lettland (2005)
DOI: 10.2908/rail_tf_ns_nl
title: Trafic ferroviaire sur le réseau ferré - Pays-Bas (2005)
title: Zugbewegungen auf dem Schienennetzwerk - Niederlande (2005)
title: Train traffic on the rail network - Netherlands (2005)
DOI: 10.2908/rail_tf_ns_no
title: Train traffic on the rail network - Norway (2005)
title: Zugbewegungen auf dem Schienennetzwerk - Norwegen (2005)
title: Trafic ferroviaire sur le réseau ferré - Norvège (2005)
DOI: 10.2908/rail_tf_ns_pl
title: Train traffic on the rail network - Poland (2005)
title: Zugbewegungen auf dem Schienennetzwerk - Polen (2005)
title: Trafic ferroviaire sur le réseau ferré - Pologne (2005)
DOI: 10.2908/rail_tf_ns_pt
title: Zugbewegungen auf dem Schienennetzwerk - Portugal (2005)
title: Train traffic on the rail network - Portugal (2005)
title: Trafic ferroviaire sur le réseau ferré - Portugal (2005)
DOI: 10.6084/m9.figshare.21804772
title: The complete chloroplast genome of a fast-growing tree <i>Lophostemon confertus</i> (Myrtaceae)

description: <i>Lophostemon confertus</i> (Myrtaceae), a fast-growing ornamental tree, is widely cultivated in tropical and subtropical regions. To determine its phylogenetic position within Myrtaceae, here we report its complete chloroplast (cp) genome, which is 160,297 bp long and contains two inverted repeats (IRs) of 26,490 bp each, separated by a small single-copy region of 18,826 bp and a large single-copy region of 88,491 bp. The cp genome contains 123 genes, including 73 unique protein-coding genes (six duplicated in the IR regions), 29 unique tRNA genes (seven duplicated in the IR regions), and four unique rRNA genes (all located in the IR regions). Phylogenetic analysis of 18 species of Myrtaceae showed that <i>L. confertus</i> is sister to <i>Xanthostemon chrysanthus.</i> The complete cp genome of <i>L. confertus</i> provides a valuable genetic resource for further phylogenetic studies.
DOI: 10.6084/m9.figshare.21804772.v1
title: The complete chloroplast genome of a fast-growing tree <i>Lophostemon confertus</i> (Myrtaceae)

description: <i>Lophostemon confertus</i> (Myrtaceae), a fast-growing ornamental tree, is widely cultivated in tropical and subtropical regions. To determine its phylogenetic position within Myrtaceae, here we report its complete chloroplast (cp) genome, which is 160,297 bp long and contains two inverted repeats (IRs) of 26,490 bp each, separated by a small single-copy region of 18,826 bp and a large single-copy region of 88,491 bp. The cp genome contains 123 genes, including 73 unique protein-coding genes (six duplicated in the IR regions), 29 unique tRNA genes (seven duplicated in the IR regions), and four unique rRNA genes (all located in the IR regions). Phylogenetic analysis of 18 species of Myrtaceae showed that <i>L. confertus</i> is sister to <i>Xanthostemon chrysanthus.</i> The complete cp genome of <i>L. confertus</i> provides a valuable genetic resource for further phylogenetic studies.
DOI: 10.2908/rail_tf_ns_se
title: Train traffic on the rail network - Sweden (2005)
title: Trafic ferroviaire sur le réseau ferré - Suède (2005)
title: Zugbewegungen auf dem Schienennetzwerk - Swhweden (2005)
DOI: 10.2908/rail_tf_ns_si
title: Zugbewegungen auf dem Schienennetzwerk - Slowenien (2005)
title: Trafic ferroviaire sur le réseau ferré - Slovénie (2005)
title: Train traffic on the rail network - Slovenia (2005)
DOI: 10.6084/m9.figshare.21804928
title: Complete mitochondrial genome of a subspecies of the great cormorant, <i>Phalacrocorax carbo hanedae</i> (Kuroda, 1925) (Suliformes: Phalacrocoracidae)

description: We determined the complete mitochondrial DNA sequence of a subspecies of the great cormorant, <i>Phalacrocorax carbo hanedae</i> (Kuroda, 1925) using long PCR and primer walking methods. The mitochondrial genome was 19,020 bp in length and contained 13 protein-coding genes (PCGs), two ribosomal RNA genes, 22 transfer RNA genes, and two control regions. It is basically consistent with the characteristics of the mitochondrial genomes of other Suliformes species. Phylogenetic analysis using 12 species of Suliformes based on the sequences of 13 concatenated protein-coding genes confirmed the monophyly of <i>P. carbo</i> ssp.
DOI: 10.6084/m9.figshare.21804928.v1
title: Complete mitochondrial genome of a subspecies of the great cormorant, <i>Phalacrocorax carbo hanedae</i> (Kuroda, 1925) (Suliformes: Phalacrocoracidae)

description: We determined the complete mitochondrial DNA sequence of a subspecies of the great cormorant, <i>Phalacrocorax carbo hanedae</i> (Kuroda, 1925) using long PCR and primer walking methods. The mitochondrial genome was 19,020 bp in length and contained 13 protein-coding genes (PCGs), two ribosomal RNA genes, 22 transfer RNA genes, and two control regions. It is basically consistent with the characteristics of the mitochondrial genomes of other Suliformes species. Phylogenetic analysis using 12 species of Suliformes based on the sequences of 13 concatenated protein-coding genes confirmed the monophyly of <i>P. carbo</i> ssp.
DOI: 10.2908/rail_tf_ns_sk
title: Trafic ferroviaire sur le réseau ferré - Slovakie (2005)
title: Zugbewegungen auf dem Schienennetzwerk - Slowakei (2005)
title: Train traffic on the rail network - Slovakia (2005)
DOI: 10.2908/rail_tf_ns_tr
title: Train traffic on the rail network - Türkiye (2005)
title: Zugbewegungen auf dem Schienennetzwerk - Türkei (2005)
title: Trafic ferroviaire sur le réseau ferré - Turquie (2005)
DOI: 10.2908/rail_tf_ns_uk
title: Zugbewegungen auf dem Schienennetzwerk - Vereinigtes Köningreich (2005)
title: Train traffic on the rail network - United Kingdom (2005)
title: Trafic ferroviaire sur le réseau ferré - Royaume-Uni (2005)
DOI: 10.6084/m9.figshare.21903623.v1
title: Characterization of the complete plastid genome of Korean endemic, <i>Ajuga spectabilis</i> Nakai (Lamiaceae)

description: <i>Ajuga spectabilis</i> Nakai is a Korean endemic species in Lamiaceae. In spite of its importance, genomic studies are not performed on this species. Here, we report the complete plastid genome sequences of <i>A. spectabilis</i>, which will provide valuable information for its natural conservation and future studies for the plastid genome evolution. The plastid genome is 150,417 bp in length, containing a large single-copy region (LSC) of 82,140 bp and a small single-copy (SSC) region of 17,165 bp which are separated by a pair of inverted repeats (IR) of 25,556 bp. It encodes 113 genes, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. The overall GC content is 38.3%, and those in the LSC, SSC, and IR regions are 36.4%, 32.2%, and 43.3%, respectively, which is consistent with other <i>Ajuga</i> species. Our phylogenetic analysis revealed that <i>A. spectabilis</i> formed a close relationship with <i>A. ciliata</i> and <i>A. decumbens</i>.
DOI: 10.6084/m9.figshare.21903623
title: Characterization of the complete plastid genome of Korean endemic, <i>Ajuga spectabilis</i> Nakai (Lamiaceae)

description: <i>Ajuga spectabilis</i> Nakai is a Korean endemic species in Lamiaceae. In spite of its importance, genomic studies are not performed on this species. Here, we report the complete plastid genome sequences of <i>A. spectabilis</i>, which will provide valuable information for its natural conservation and future studies for the plastid genome evolution. The plastid genome is 150,417 bp in length, containing a large single-copy region (LSC) of 82,140 bp and a small single-copy (SSC) region of 17,165 bp which are separated by a pair of inverted repeats (IR) of 25,556 bp. It encodes 113 genes, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. The overall GC content is 38.3%, and those in the LSC, SSC, and IR regions are 36.4%, 32.2%, and 43.3%, respectively, which is consistent with other <i>Ajuga</i> species. Our phylogenetic analysis revealed that <i>A. spectabilis</i> formed a close relationship with <i>A. ciliata</i> and <i>A. decumbens</i>.
DOI: 10.6084/m9.figshare.21957449.v2
title: Phenotypic values of grain size traits of main crop and ratoon rice under two environments

description: All the 159 <em>indica</em> rice accessions were planted, with a randomized complete block design, in Wuhan in 2021. This experiment was replicated two times in different fields, namely environments 1 and 2. Each material was planted in one plot with 10 seedlings, row spacing was 16.7 cm × 20 cm, and one line empty between cells. At yellow ripening stage, grain width (GW) (mm), grain length (GL) (mm), and thousand grain weight (TGW) (g) for each accession in mian crop (MC) and ratoon rice (RR) were measured for three times. GL in MC is abbreviated as GL-MC, and it is true for other traits.
DOI: 10.6084/m9.figshare.21957449.v3
title: Phenotypic values of grain size traits of main crop and ratoon rice under two environments

description: All the 159 <em>indica</em> rice accessions were planted, with a randomized complete block design, in Wuhan in 2021. This experiment was replicated two times in different fields, namely environments 1 and 2. Each material was planted in one plot with 10 seedlings, row spacing was 16.7 cm × 20 cm, and one line empty between cells. At yellow ripening stage, grain width (GW) (mm), grain length (GL) (mm), and thousand grain weight (TGW) (g) for each accession in mian crop (MC) and ratoon rice (RR) were measured for three times. GL in MC is abbreviated as GL-MC, and it is true for other traits.
DOI: 10.34740/kaggle/dsv/4937425
title: Mahanagar Yatayat Dataset
DOI: 10.3886/e183868v2
title: Lauro de Oliveira Lima e a Educação Democrática

description: O objetivo deste trabalho é fortalecer que o analfabetismo e a evasão escolar ocorram por causa da exclusão social, das atitudes antidemocráticas do Estado e da Sociedade e do desamparo em que vivem os mais desfavorecidos. Estudos sobre o desenvolvimento da inteligência demonstram que toda criança pode aprender o ensino formal oferecido nas escolas, exceto nos casos de doença neurológica degenerativa que compromete a memória, o pensamento, o comportamento e a compreensão. O analfabetismo e a evasão escolar são diagnósticos não de deficiência intelectual dos analfabetos, mas da falta de vontade política da Escola, do Estado, da Família e da Sociedade, que não promovem a inclusão e excluem do ensino formal os desfavorecidos. O referencial teórico deste trabalho se sustenta numa conversa que teve com Lauro de Oliveira Lima, o qual desconstruiu,
DOI: 10.3886/e183869v3
title: São Lourenço, Minas Gerais, Estância Hidromineral

description: O objetivo deste artigo é investigar, através da historiografia existente, quem foi o primeiro proprietário das terras onde está situado no município de São Lourenço, Minas Gerais. A metodologia adotada neste estudo fundamentou-se no cruzamento das fontes históricas encontradas, sobretudo nos arquivos digitais do IBGE e do Arquivo Público Mineiro - APM, entre outras fontes que compõem a rica literatura historiográfica do município. O resultado esperado é que esta pesquisa estabeleça um levantamento histórico capaz de auxiliar na preservação da memória social e cultural da estância hidromineral de São Lourenço e contribuir para o preenchimento com documentos históricos adicionais ou vazios existentes na história do município.
DOI: 10.3886/e184522v1
title: LAURO OLIVEIRA LIMA NA IMPRENSA DO RIO DE JANEIRO

description: O objetivo deste trabalho é contextualizar o professor Lauro de Oliveira Lima dentro da realidade sociocultural que vive na década de 60 no subúrbio do Rio de Janeiro. Seus argumentos pedagógicos na imprensa defendendo a inteligência das pessoas que não a desenvolveram para o ensino formal e reivindicando educação de qualidade, transformaram minha percepção da realidade social. Se eu aprendi que os adultos eram pessoas formadas, passei a compreender que a pessoa nunca está formada; se aprendeu que o pobre era analfabeto por conta de uma incapacidade mental que o impedia de aprender, descobrindo que lhe faltou foi oportunidade. Passei a desconfiar que muita coisa poderia estar errada no que me ensinavam a partir do senso comum. Migrei do mito para a Ciência. A presente investigação filosófica sobre essa transformação dar-se-á mediante a comparação entre o pensamento de Lima sobre a “formação continuada” e o pensamento do senso comum acerca do conceito de “pessoa formada”. Finja-se, com essa estratégia, conhecer a indignação que fazia de Lima um defensor da “formação continuada” e um crítico do preconceito de que os pobres não se formavam doutores porque tinham déficit de inteligência. <br>
DOI: 10.5281/zenodo.7600069
title: Test sets and results for paper 'Rapid localization of gravitational wave sources from compact binary coalescences using deep learning'

description: This folder contains the input data (signal-to-noise ratio time series for gravitational wave detections) and results (sky localization areas) obtained from the deep learning based sky localization model 'GW-SkyLocator', and the rapid online gravitational wave sky localization tool 'BAYESTAR' on a set of injections of gravitational wave signals from compact binary mergers. For details of the work, please refer to the paper, 'Rapid localization of gravitational wave sources from compact binary coalescences using deep learning' (https://arxiv.org/abs/2207.14522).
DOI: 10.5281/zenodo.7600068
title: Test sets and results for paper 'Rapid localization of gravitational wave sources from compact binary coalescences using deep learning'

description: This folder contains the input data (signal-to-noise ratio time series for gravitational wave detections) and results (sky localization areas) obtained from the deep learning based sky localization model 'GW-SkyLocator', and the rapid online gravitational wave sky localization tool 'BAYESTAR' on a set of injections of gravitational wave signals from compact binary mergers. For details of the work, please refer to the paper, 'Rapid localization of gravitational wave sources from compact binary coalescences using deep learning' (https://arxiv.org/abs/2207.14522).