cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.evt9vn
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Echiophis punctifer (Kaup, 1859)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 59 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040279-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/sfr3-4a83
title: Parkes observations for project P1338 semester 2024OCTS_25

description: Fast radio bursts (FRBs) are millisecond-duration radio bursts of extragalactic origin. Since the discovery of the first FRB in the archival Parkes/Murriyang multibeam data, a broad dichotomy in population has emerged. Some FRBs have been seen to be repeating, while others are not, despite a significant amount of follow-up using different radio telescopes. The repeating FRB 20240114A was recently discovered by CHIME/FRB, which has been seen to have an exceptionally high burst activity. Such extreme burst activity has not been seen in any other source. The repeating FRBs, such as FRB 20240114A, provide an unparalleled window into their circumburst environment due to their repeating nature, which can be used to constrain possible progenitor models and test underlying emission mechanisms. The previous Parkes/Murriyang source follow-up has also revealed intriguing spectro-polarimetric properties, such as frequency-dependent evolution of burst central frequency or chromaticity, a possible activity window, significantly large circular polarisation (CP), and frequency-dependent CP. These properties hold the key towards understanding the circumburst environment of the FRBs, and test possible progenitor models. A large bandwidth instrument with reliable polarimetry has been critical in uncovering these properties. The ultra-wideband low (UWL) receiver on Parkes/Murriyang is ideally suited to explore the source's wideband spectro-temporal and polarimetric behaviour. We propose a campaign to regularly follow up FRB 20240114A to ascertain its long-term evolution of spectro-temporal properties.
DOI: 10.15468/dl.u8u3k9
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Lithobates areolatus circulosus (Rice & Davis, 1878))"
 ]
}

 The dataset includes 63 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040280-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ufr2ep
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Echiostoma barbatum Lowe, 1843",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 91 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040281-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.efneth
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Elacatinus horsti (Metzelaar, 1922)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 47 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040283-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eus8r5
title: Occurrence Download

description: A dataset containing 13745 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Lithobates berlandieri (Baird, 1859))"
 ]
}

 The dataset includes 13745 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040282-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j2ke2g
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Elacatinus xanthiprora (Böhlke & Robins, 1968)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040284-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hf4ey6
title: Occurrence Download

description: A dataset containing 13745 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Lithobates berlandieri (Baird, 1859))"
 ]
}

 The dataset includes 13745 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040285-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/ddvgdn7v7w.1
title: Australian HCP and seasonal influenza vaccination. Dec 2024

description: A cross-sectional survey was designed and distributed to a national Australian HCP sample, consisting of practicing nurses, midwives, pharmacists and medical practitioners. The self-administered, anonymous online survey measured key characteristics that predict vaccination behaviour and intention. Results: Most participants (n= 173) demonstrated habitual SIV behaviour (77.91%) that was associated with intention to vaccinate in the future. The archetype was supported by survey findings as key constructs were associated with vaccination intention, then behaviour. These constructs included heightened professional responsibility, vaccine confidence, and protection of self and patients. Furthermore, results suggested progressing vaccination intention to behaviour and overcoming vaccine complacency is possible through employee provision of free, accessible vaccination services.
DOI: 10.15468/dl.65gcjf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Elassodiscus caudatus (Gilbert, 1915)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040286-241126133413365/datasets/export for details.
DOI: 10.18112/openneuro.ds005731.v1.0.0
title: Round-robin interpersonal perception
DOI: 10.15468/dl.samfgj
title: Occurrence Download

description: A dataset containing 1880 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((35.196592 -12.734153, 37.040866 -12.734153, 37.040866 -10.80303, 35.196592 -10.80303, 35.196592 -12.734153))"
 ]
}

 The dataset includes 1880 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040287-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k9d9gj
title: Occurrence Download

description: A dataset containing 5875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Lithobates blairi (Mecham, Littlejohn, Oldham, Brown & Brown, 1973))"
 ]
}

 The dataset includes 5875 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040288-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gb445m
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Unomia stolonifera (Gohar, 1938)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 30 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040289-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sdrfnt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Elassodiscus tremebundus Gilbert & Burke, 1912",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040290-241126133413365/datasets/export for details.
DOI: 10.15468/dl.q5rh65
title: Occurrence Download

description: A dataset containing 333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Electrona risso (Cocco, 1829)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 333 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040291-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bpu48f
title: Occurrence Download

description: A dataset containing 5875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Lithobates blairi (Mecham, Littlejohn, Oldham, Brown & Brown, 1973))"
 ]
}

 The dataset includes 5875 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040292-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2hfq6w
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Encyclia selligera (Bateman ex Lindl.) Schltr."
 ]
}

 The dataset includes 54 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040293-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p3a2nm
title: Occurrence Download

description: A dataset containing 9107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Elops saurus Linnaeus, 1766",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 9107 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040294-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dxkzbc
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bactrocera carambolae Drew & Hancock, 1994",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than 5000",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 59 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040295-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4wfz8n
title: Occurrence Download

description: A dataset containing 689 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Lithobates capito (LeConte, 1855))"
 ]
}

 The dataset includes 689 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040296-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.4707812
title: oseminck/cidre: Cidre

description: Second version of the corpus. First release only on Ortolang: https://www.ortolang.fr/market/corpora/cidre. This release includes some corrections on the corpus and meta data and distributes the programming scripts to collect the corpus.
DOI: 10.15468/dl.gqumcf
title: Occurrence Download

description: A dataset containing 689 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Lithobates capito (LeConte, 1855))"
 ]
}

 The dataset includes 689 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040297-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cem2r5
title: Occurrence Download

description: A dataset containing 548 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Embassichthys bathybius (Gilbert, 1890)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 548 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040298-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bpzews
title: Occurrence Download

description: A dataset containing 6981 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Embiotoca lateralis Agassiz, 1854",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 6981 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040300-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6pzhx
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Emblemaria atlantica Jordan & Evermann, 1898",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040301-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12636775
title: Tet2 deficiency mitigates epigenetic aging in clonal hematopoiesis
title: Tet2 deficiency reshapes the transcriptomic landscape in HSPCs during aging

description: Github repository

https://github.com/LabShengLi/CHIP-DS

File list



CHIP-DS-main.zip: all analytical scripts.

scRNA_input.rds: single-cell RNA data for all samples in an R object.

scATAC_inputs.tar.gz: all single-cell ATAC inputs data for analysis scripts.


*Correspondence should be addressed to O.H. (oguro@uchc.edu) and S.L. (sheng.li@jax.org).
description: Abstract

Clonal hematopoiesis (CH) occurs with aging and involves the abnormal clonal expansion of hematopoietic stem cells (HSCs) carrying somatic mutations in genes frequently mutated in leukemia, e.g., the gene encoding DNA demethylase TET2. While TET2 mutations alter the HSC epigenome, the mechanisms by which they drive HSC self-renewal and myeloid transformation preferentially in old age remain elusive. Here, our multi-omics approach reveals that Tet2 deficiency mitigates detrimental HSC aging processes at the epigenomic, transcriptomic, and cellular levels, preserving HSC function. Despite promoting HSC expansion, a hallmark of HSC aging, Tet2 deficiency reduces transcriptomic aging and mitigates aging-related chromatin accessibility changes at the single HSC level. Changes in DNA methylation and CTCF insulator binding during HSC aging are also mitigated by Tet2 deficiency. Moreover, transcription factor-target gene pairs whose activities are altered during HSC aging remain stable in Tet2-deficient HSCs. These findings reveal that Tet2 deficiency mitigates HSC aging and hijacks HSC expansion programs via epigenetic reprogramming, providing novel insights into the cooperation between age and somatic mutations in promoting CH.
DOI: 10.5281/zenodo.12636776
title: Tet2 deficiency mitigates epigenetic aging in clonal hematopoiesis
title: Tet2 deficiency reshapes the transcriptomic landscape in HSPCs during aging

description: Abstract

Age-related CH involves abnormal clonal expansion of hematopoietic stem cells (HSCs) bearing somatic mutations in frequently mutated genes in leukemia, including epigenetic regulators, such as the DNA demethylase TET2. While such mutations are known to alter the HSC epigenome, however, the mechanisms through which these mutations drive HSC self-renewal, myeloid transformation, and inflammatory response remain elusive. In this study, we utilized single-cell multi-omics and flow-cytometric phenotyping to show that biologically important HSC aging processes are mitigated by Tet2 deficiency in mice. Tet2-deficient HSCs reduce HSC aging scores at an older age unlike at young age, based on gene expression at a single-cell resolution (scRNA). This age mitigation was further validated by single nuclear open chromatin accessibility (snATAC) and DNA methylation that are elevated with aging but lowered with Tet2 deficiency in HSCs from old mice. Moreover, we found that Tet2 deficiency drives a significant expansion of HSCs, a cellular hallmark of HSC aging. We showed that increased expression of Eya4, Lars2, Mical2, and Car2 during aging are down-regulated in HSCs from Tet2∆/∆ aged mice. This repository lists the necessary processed data used by analytical scripts. Extensive information of all other intermediate files (scripts or data) are available upon request.

Github repository

https://github.com/LabShengLi/CHIP-DS

File list



CHIP-DS-main.zip: all analytical scripts.

scRNA_input.rds: single-cell RNA data for all samples in an R object.

scATAC_inputs.tar.gz: all single-cell ATAC inputs data for analysis scripts.


*Correspondence should be addressed to S.L. (sheng.li@jax.org).
DOI: 10.5281/zenodo.12654212
title: Tet2 deficiency mitigates epigenetic aging in clonal hematopoiesis
title: Tet2 deficiency reshapes the transcriptomic landscape in HSPCs during aging

description: Github repository

https://github.com/LabShengLi/CHIP-DS

File list



CHIP-DS-main.zip: all analytical scripts.

scRNA_input.rds: single-cell RNA data for all samples in an R object.

scATAC_inputs.tar.gz: all single-cell ATAC inputs data for analysis scripts.


*Correspondence should be addressed to O.H. (oguro@uchc.edu) and S.L. (sheng.li@jax.org).
description: Abstract

Clonal hematopoiesis (CH) occurs with aging and involves the abnormal clonal expansion of hematopoietic stem cells (HSCs) carrying somatic mutations in genes frequently mutated in leukemia, e.g., the gene encoding DNA demethylase TET2. While TET2 mutations alter the HSC epigenome, the mechanisms by which they drive HSC self-renewal and myeloid transformation preferentially in old age remain elusive. Here, our multi-omics approach reveals that Tet2 deficiency mitigates detrimental HSC aging processes at the epigenomic, transcriptomic, and cellular levels, preserving HSC function. Despite promoting HSC expansion, a hallmark of HSC aging, Tet2 deficiency reduces transcriptomic aging and mitigates aging-related chromatin accessibility changes at the single HSC level. Changes in DNA methylation and CTCF insulator binding during HSC aging are also mitigated by Tet2 deficiency. Moreover, transcription factor-target gene pairs whose activities are altered during HSC aging remain stable in Tet2-deficient HSCs. These findings reveal that Tet2 deficiency mitigates HSC aging and hijacks HSC expansion programs via epigenetic reprogramming, providing novel insights into the cooperation between age and somatic mutations in promoting CH.
DOI: 10.15468/dl.yceysw
title: Occurrence Download

description: A dataset containing 184 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Emblemaria pandionis Evermann & Marsh, 1900",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 184 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040302-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.72j2kv
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Emblemaria piratula Ginsburg & Reid, 1942",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040303-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3628931_d3.v1
title: Additional file 2: Table S2. of Colorectal Carcinogenesis in the A/J Min/+ Mouse Model is Inhibited by Hemin, Independently of Dietary Fat Content and Fecal Lipid Peroxidation Rate

description: Dataset. Number, average size and load of intestinal lesions, fecal TBARS and fecal water content, body weight and daily food intake. (XLS 86 kb)