cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0208540.10fu
title: SH0208540.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0208541.10fu
title: SH0208541.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0208542.10fu
title: SH0208542.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0208543.10fu
title: SH0208543.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0208544.10fu
title: SH0208544.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0208545.10fu
title: SH0208545.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0208546.10fu
title: SH0208546.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.25345/c5599zf4x
title: MassIVE MSV000099387 - The Organ_resolved Metabolome Atlas of the Aging Mice_HILIC_POS and NEG
title: We profiled polar metabolites across multiple organs and fluids from C57BL/6NCrl (B6NCrl-MVP) wild-type mice at two ages (16 and 92 weeks), including both sexes. Samples spanned the nervous (hippocampus, cerebrospinal fluid), connective (brown, subcutaneous, and visceral/abdominal fat), digestive (stomach, duodenum, jejunum, ileum, cecum, colon, liver, gallbladder), immune (spleen, thymus), reproductive (testes, uterus), excretory (kidney, bladder), endocrine (pancreas), cardiovascular (heart), muscular (quadriceps), and respiratory (lung) systems, plus biofluids (plasma, urine) and digestive products (feces). Polar metabolomics was performed by LC-MS/MS on a Thermo Scientific Q Exactive HF-X Quadrupole-Orbitrap coupled to a Vanquish UHPLC in positive mode. Metabolites were separated on a Waters ACQUITY Premier BEH Amide column (50 x 2.1 mm, 1.7 um) prior to high-resolution MS acquisition.
DOI: 10.15468/dl.m58fpr
title: Occurrence Download

description: A dataset containing 1279 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acer sterculiaceum)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1279 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051276-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wxnxzs
title: Occurrence Download

description: A dataset containing 1298 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podocarpus matudae"
 ]
}

 The dataset includes 1298 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051275-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17193566
title: RiboGrove database

description: A database of full-length 16S rRNA gene sequences from completely assembled prokaryotic genomes.

Description and guidelines:



Main website: https://mbio.bas-net.by/cager/en/ribogrove

GitHub mirror: https://masikol.github.io/
DOI: 10.5281/zenodo.17193515
title: RiboGrove database

description: A database of full-length 16S rRNA gene sequences from completely assembled prokaryotic genomes.

Description and guidelines:



Main website: https://mbio.bas-net.by/cager/en/ribogrove

GitHub mirror: https://masikol.github.io/
DOI: 10.15468/dl.966nyc
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anisosciadium orientale",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051277-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26023/gf3q-k7v7-rz11
title: ACE-ASIA: Kosan Size Distribution and Chemical Composition Data. Version 1.0

description: This dataset contains MOUDI measurements made during ACE-ASIA at the surface site on Kosan, JeJu, Republic of Korea.
DOI: 10.15468/dl.y4nwct
title: Occurrence Download

description: A dataset containing 21134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium pratense",
 "Geometry POLYGON ((26.04335 1.226334, 135.0263 1.226334, 135.0263 55.38525, 26.04335 55.38525, 26.04335 1.226334))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 21134 records from 207 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051278-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30272416
title: [Code-Tutoriel] Chapitre : Individus, institutions, territoires… étudier des trajectoires à l’aide de l’analyse de séquences. L’exemple des EHPADs en France, 2009-2023

description: <b>Description du répertoire</b>Dans ce répertoire se trouvent les bases de données ainsi que le code nécessaires pour reproduire l’exemple présenté dans le chapitre <i>« Individus, institutions, territoires… étudier des trajectoires à l’aide de l’analyse de séquences. L’exemple des EHPAD en France, 2009-2023 » </i>écris en collaboration avec Guillaume Le Roux et Loïc Trabut. Le code fourni peut également être réutilisé pour vos propres analyses de séquences, en adaptant vos données aux scripts proposés. Si vous utilisez ce matériel, merci de citer ce répertoire.Pour l’utiliser, vous devez simplement télécharger les fichiers dans votre environnement R, puis exécuter les lignes du fichier <code><strong>code_chapitre_analyse_de_sequences.r</strong></code>.
DOI: 10.6084/m9.figshare.30272416.v1
title: [Code-Tutoriel] Chapitre : Individus, institutions, territoires… étudier des trajectoires à l’aide de l’analyse de séquences. L’exemple des EHPADs en France, 2009-2023

description: <b>Description du répertoire</b>Dans ce répertoire se trouvent les bases de données ainsi que le code nécessaires pour reproduire l’exemple présenté dans le chapitre <i>« Individus, institutions, territoires… étudier des trajectoires à l’aide de l’analyse de séquences. L’exemple des EHPAD en France, 2009-2023 » </i>écris en collaboration avec Guillaume Le Roux et Loïc Trabut. Le code fourni peut également être réutilisé pour vos propres analyses de séquences, en adaptant vos données aux scripts proposés. Si vous utilisez ce matériel, merci de citer ce répertoire.Pour l’utiliser, vous devez simplement télécharger les fichiers dans votre environnement R, puis exécuter les lignes du fichier <code><strong>code_chapitre_analyse_de_sequences.r</strong></code>.
DOI: 10.5281/zenodo.17193318
title: RiboGrove database

description: A database of full-length 16S rRNA gene sequences from completely assembled prokaryotic genomes.

Description and guidelines:



Main website: https://mbio.bas-net.by/cager/en/ribogrove

GitHub mirror: https://masikol.github.io/
DOI: 10.15468/dl.c5eqtn
title: Occurrence Download

description: A dataset containing 25631 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acer tataricum)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 25631 records from 418 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051281-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cduv9u
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is BRA.20_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhipsalis baccifera"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051282-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.72qgyx
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bowlesia incana",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 31 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051283-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17193148
title: RiboGrove database

description: A database of full-length 16S rRNA gene sequences from completely assembled prokaryotic genomes.

Description and guidelines:



Main website: https://mbio.bas-net.by/cager/en/ribogrove

GitHub mirror: https://masikol.github.io/
DOI: 10.15468/dl.43d4rf
title: Occurrence Download

description: A dataset containing 530288 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "OccurrenceStatus is Present",
 "TaxonKey is Insecta",
 "Year 2015-2025"
 ]
}

 The dataset includes 530288 records from 443 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051249-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c7j6jf
title: Occurrence Download

description: A dataset containing 3323 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Data on the biodiversity of macrophyte communities and associated aquatic organisms in lakes of the Vologda Region (North-Western Russia): algae and invertebrates"
 ]
}

 The dataset includes 3323 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051284-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n5887m
title: Occurrence Download

description: A dataset containing 23297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium repens",
 "Geometry POLYGON ((26.04335 1.226334, 135.0263 1.226334, 135.0263 55.38525, 26.04335 55.38525, 26.04335 1.226334))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 23297 records from 250 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051285-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26023/t0j6-wyr7-dc12
title: ACE-ASIA: Kosan Ionic Compounds of PM10, PM2.5. Version 1.0

description: This dataset contains Ionic Compound measurements made during ACE-ASIA.
DOI: 10.15468/dl.vzyt3d
title: Occurrence Download

description: A dataset containing 71831 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Machine Observation)",
 "Continent is North America",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Hyles lineata, Arctia caja, Atteva aurea)",
 "Year 2014-2024"
 ]
}

 The dataset includes 71831 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051267-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17192624
title: RiboGrove database

description: A database of full-length 16S rRNA gene sequences from completely assembled prokaryotic genomes.

Description and guidelines:



Main website: https://mbio.bas-net.by/cager/en/ribogrove

GitHub mirror: https://masikol.github.io/
DOI: 10.15468/dl.uvypcc
title: Occurrence Download

description: A dataset containing 16627 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Columba livia J.F.Gmelin, 1789",
 {
 "or" : [
 "Country is Venezuela (Bolivarian Republic of)",
 "Country is Guatemala",
 "Country is Mexico",
 "Country is Brazil",
 "Country is Ecuador",
 "Country is Peru",
 "Country is Colombia",
 "Country is Panama",
 "Country is Paraguay"
 ]
 },
 "HasCoordinate is true"
 ]
}

 The dataset includes 16627 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006317-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6a9c2y
title: Occurrence Download

description: A dataset containing 51448 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sula nebouxii Milne-Edwards, 1882"
 ]
}

 The dataset includes 51448 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014069-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hgp82w
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus chiapensis (Martínez) Andresen"
 ]
}

 The dataset includes 65 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006317-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tpv2tx
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Artocarpus lowii King"
 ]
}

 The dataset includes 59 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019436-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qngxhq
title: Occurrence Download

description: A dataset containing 324 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melanotaenia duboulayi (Castelnau, 1878)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 324 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006317-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.63gs5m
title: Occurrence Download

description: A dataset containing 31691 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alternanthera philoxeroides (Mart.) Griseb."
 ]
}

 The dataset includes 31691 records from 367 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059296-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hbfy9m
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allobates wayuu (Acosta-Galvis, Cuentas & Coloma, 1999)"
 ]
}

 The dataset includes 26 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017646-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.