cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12130860
title: Hydrothermal areas, microbial mats and sea grass in Paleochori Bay, Milos, Greece

description: The study presents a 1:3300 scale map, encompassing an area of 1.05 km<sup>2</sup>, depicting the first detailed map of the shallow-water water hydrothermal system in Paleochori Bay, Milos, Greece. The seafloor was mapped using orthophotos acquired by a drone survey and processed using ArcGIS. The map shows the distribution of white microbial mats, former microbial mats, sea grass and ‘normal’ sand down to a depth of 15 m. Generation of a comprehensive map with native shapefiles and layer files, where any GPS coordinate in Paleochori Bay can be obtained, allows to target specific locations for data collection, rather than resorting to vague site descriptions, as has been the practice in the past. Sea floor temperature measurements carried out by Scuba divers in conjunction with GPS coordinates were mapped and interpolated to evaluate the temperature distribution in Paleochori Bay, which in turn supports the overall understanding of the hydrothermal system.
DOI: 10.6084/m9.figshare.12923676.v3
title: Geomorphology of the high-elevated flysch range – Mt. Babia Góra Massif (Western Carpathians)

description: A detailed geomorphological map of the Mt. Babia Góra Massif (1725 m a.s.l.), at a scale 1:10,000 is presented. A slope, glacial, periglacial and fluvial features were mapped on the base of the coupled field studies and LiDAR DEM analyses. This study underlines the complexity of rock slope failures (RSFs), in shaping the morphology of compact and isolated upland, exhibiting one of the highest incidences of RSFs yet recorded in Europe (29% for a whole massif, and 45% for the north face). A total of 212 RSFs were mapped of which 18 failures are large landslides (&gt;0.25 km<sup>2</sup>), among them is one of the largest known (2.6 km<sup>2</sup> and 150 × 106 m<sup>3</sup>) in the Polish Flysch Carpathians. The mapping and Schmidt-hammer results shed light on the problem of glacial relief of the massif, documenting the remnants of glacial deposits beyond the tongues of landslides in the Szumiąca Woda valley.
DOI: 10.6084/m9.figshare.12923676.v2
title: Geomorphology of the high-elevated flysch range – Mt. Babia Góra Massif (Western Carpathians)

description: A detailed geomorphological map of the Mt. Babia Góra Massif (1725 m a.s.l.), at a scale 1:10,000 is presented. A slope, glacial, periglacial and fluvial features were mapped on the base of the coupled field studies and LiDAR DEM analyses. This study underlines the complexity of rock slope failures (RSFs), in shaping the morphology of compact and isolated upland, exhibiting one of the highest incidences of RSFs yet recorded in Europe (29% for a whole massif, and 45% for the north face). A total of 212 RSFs were mapped of which 18 failures are large landslides (&gt;0.25 km<sup>2</sup>), among them is one of the largest known (2.6 km<sup>2</sup> and 150 × 106 m<sup>3</sup>) in the Polish Flysch Carpathians. The mapping and Schmidt-hammer results shed light on the problem of glacial relief of the massif, documenting the remnants of glacial deposits beyond the tongues of landslides in the Szumiąca Woda valley.
DOI: 10.6084/m9.figshare.12130860.v3
title: Hydrothermal areas, microbial mats and sea grass in Paleochori Bay, Milos, Greece

description: The study presents a 1:3300 scale map, encompassing an area of 1.05 km<sup>2</sup>, depicting the first detailed map of the shallow-water water hydrothermal system in Paleochori Bay, Milos, Greece. The seafloor was mapped using orthophotos acquired by a drone survey and processed using ArcGIS. The map shows the distribution of white microbial mats, former microbial mats, sea grass and ‘normal’ sand down to a depth of 15 m. Generation of a comprehensive map with native shapefiles and layer files, where any GPS coordinate in Paleochori Bay can be obtained, allows to target specific locations for data collection, rather than resorting to vague site descriptions, as has been the practice in the past. Sea floor temperature measurements carried out by Scuba divers in conjunction with GPS coordinates were mapped and interpolated to evaluate the temperature distribution in Paleochori Bay, which in turn supports the overall understanding of the hydrothermal system.
DOI: 10.6084/m9.figshare.12130860.v2
title: Hydrothermal areas, microbial mats and sea grass in Paleochori Bay, Milos, Greece

description: The study presents a 1:3300 scale map, encompassing an area of 1.05 km<sup>2</sup>, depicting the first detailed map of the shallow-water water hydrothermal system in Paleochori Bay, Milos, Greece. The seafloor was mapped using orthophotos acquired by a drone survey and processed using ArcGIS. The map shows the distribution of white microbial mats, former microbial mats, sea grass and ‘normal’ sand down to a depth of 15 m. Generation of a comprehensive map with native shapefiles and layer files, where any GPS coordinate in Paleochori Bay can be obtained, allows to target specific locations for data collection, rather than resorting to vague site descriptions, as has been the practice in the past. Sea floor temperature measurements carried out by Scuba divers in conjunction with GPS coordinates were mapped and interpolated to evaluate the temperature distribution in Paleochori Bay, which in turn supports the overall understanding of the hydrothermal system.
DOI: 10.6084/m9.figshare.14199256.v1
title: Local minima of dissonance functions

description: When the same sound is produced simultaneously with two different fundamental frequencies, auditory roughness is observed. If the first sound is fixed and the fundamental frequency of the second is varied continuously, auditory roughness also varies continuously. A vowel sound is distinguished by its spectral envelope – which is independent of the fundamental frequency. This is a motivation to define the metric space of timbres. Each timbre is associated with a dissonance function which has local minima at certain intervals of local consonance related to the timbre. This is related to the music-theoretical notion of consonant intervals and scales. For the subspace consisting of all timbres with an interval of local consonance at a chosen point <i>β</i>, the main theorem describes certain points on the boundary by the vanishing of one-sided derivatives of dissonance functions at <i>β</i>.
DOI: 10.6084/m9.figshare.7392464
title: Foraging patterns and artificial fragrance choices of male orchid bees in the Brazilian Atlantic Rainforest

description: With the aim of increasing our knowledge concerning fragrance choices by male euglossine bees (Apidae, Euglossini), we investigated: (i) possible foraging patterns and choices of artificial fragrances explored by the most frequent species attracted to scent baits during the same season across consecutive years, sampled invariably in a same study area; (ii) the foraging patterns of populations of orchid bees surveyed in two similar forest habitats (Atlantic rainforest remnants) located 24 km apart, on Superagui Island (SI) and on a private reserve (RNSM), in southern Brazil. Although in both areas males attracted to scent baits were collected with insect nets and odour traps during the warm-wet season, the number of samplings were different in both study sites, totalling 15 samplings on RNSM and five on RNSM. In both areas four euglossine species were the most abundant: <i>Euglossa annectans</i>, <i>E. stellfeldi</i>, <i>E. iopoecila</i> and <i>E. roderici</i>. Overall, we can draw three main conclusions. Firstly, there were conspicuous patterns in regard to the set of fragrances visited by the four most abundant euglossine species over the three consecutive years of surveys on SI, with some shifts in fragrance choices found only for <i>E. annectans</i> and <i>E. stellfeldi</i>. Second, the most attractive fragrances used distinctively by each species were very similar in both study areas, indicating a local intraspecific similarity in the use of some main fragrances. Third, <i>E. annectans</i> showed a clear tendency to occupy a broader niche, which probably resulted in the highest percentages of niche overlap.
DOI: 10.6084/m9.figshare.7392464.v1
title: Foraging patterns and artificial fragrance choices of male orchid bees in the Brazilian Atlantic Rainforest

description: With the aim of increasing our knowledge concerning fragrance choices by male euglossine bees (Apidae, Euglossini), we investigated: (i) possible foraging patterns and choices of artificial fragrances explored by the most frequent species attracted to scent baits during the same season across consecutive years, sampled invariably in a same study area; (ii) the foraging patterns of populations of orchid bees surveyed in two similar forest habitats (Atlantic rainforest remnants) located 24 km apart, on Superagui Island (SI) and on a private reserve (RNSM), in southern Brazil. Although in both areas males attracted to scent baits were collected with insect nets and odour traps during the warm-wet season, the number of samplings were different in both study sites, totalling 15 samplings on RNSM and five on RNSM. In both areas four euglossine species were the most abundant: <i>Euglossa annectans</i>, <i>E. stellfeldi</i>, <i>E. iopoecila</i> and <i>E. roderici</i>. Overall, we can draw three main conclusions. Firstly, there were conspicuous patterns in regard to the set of fragrances visited by the four most abundant euglossine species over the three consecutive years of surveys on SI, with some shifts in fragrance choices found only for <i>E. annectans</i> and <i>E. stellfeldi</i>. Second, the most attractive fragrances used distinctively by each species were very similar in both study areas, indicating a local intraspecific similarity in the use of some main fragrances. Third, <i>E. annectans</i> showed a clear tendency to occupy a broader niche, which probably resulted in the highest percentages of niche overlap.
DOI: 10.6084/m9.figshare.8223827
title: Dispersal dynamics of juvenile Secretarybirds <i>Sagittarius serpentarius</i> in southern Africa

description: Knowledge of the dispersal behaviour of southern Africa’s juvenile Secretarybirds <i>Sagittarius serpentarius</i> was previously limited to a small number of ring recoveries (<i>n</i> = 4) in South Africa. From 2012 to 2015, 10 GSM-GPS solar trackers were fitted to juvenile Secretarybirds, aged approximately eight weeks, on their nests. The birds spent an average of 91.30 ± 8.80 d in their natal territories, which had a mean home range size (kernel density estimate 90%) of 1.21 ± 0.34 km<sup>2</sup>. As they aged, their exploratory movements around the nest expanded exponentially. During this period, exploratory activity peaked between 09:00 and 12:00. They showed high variability in maximum distance travelled from the nest and timing of dispersal from their natal territories. Most of the birds (<i>n</i> = 7) dispersed &gt;150 km from their nests before returning to their natal region, suggesting the existence of natal philopatry in this species. The age of first breeding for a male Secretarybird was also confirmed during this study. The wide-ranging behaviour of juvenile Secretarybirds exposes them to a diverse range of threats, and a better understanding of their movements will aid the development of appropriate conservation strategies for this terrestrial raptor.
DOI: 10.6084/m9.figshare.4534118
title: Teacher pedagogical content knowledge, practice, and student achievement<sup>†</sup>

description: In this exploratory study, we attempted to measure potential changes in teacher knowledge and practice as a result of an intervention, as well as trace such changes through a theoretical path of influence that could inform a model of teacher professional knowledge. We created an instrument to measure pedagogical content knowledge (PCK), studied the impact of a two-year professional development intervention, explored the relationships among teacher variables to attempt to validate a model of teacher professional knowledge, and examined the relationship of teacher professional knowledge and classroom practice on student achievement. Teacher professional knowledge and skill was measured in terms of academic content knowledge (ACK), general pedagogical knowledge (GenPK), PCK and teacher practice. Our PCK instrument identified two factors within PCK: PCK-content knowledge and PCK-pedagogical knowledge. Teacher gains existed for all variables. Only GenPK had a significant relationship to teacher practice. ACK was the only variable that explained a substantial portion of student achievement. Our findings provide empirical evidence that we interpret through the lens of the model of teacher professional knowledge and skill, including PCK [Gess-Newsome, J. (2015). A model of teacher professional knowledge and skill including PCK: Results of the thinking from the PCK summit. In A. Berry, P. Friedrichsen, & J. Loughran (Eds.), <i>Re-examining pedagogical content knowledge in science education</i> (pp. 28–42). London: Routledge Press], highlighting the complexity of measuring teacher professional knowledge and skill.
DOI: 10.6084/m9.figshare.4534118.v6
title: Teacher pedagogical content knowledge, practice, and student achievement<sup>†</sup>

description: In this exploratory study, we attempted to measure potential changes in teacher knowledge and practice as a result of an intervention, as well as trace such changes through a theoretical path of influence that could inform a model of teacher professional knowledge. We created an instrument to measure pedagogical content knowledge (PCK), studied the impact of a two-year professional development intervention, explored the relationships among teacher variables to attempt to validate a model of teacher professional knowledge, and examined the relationship of teacher professional knowledge and classroom practice on student achievement. Teacher professional knowledge and skill was measured in terms of academic content knowledge (ACK), general pedagogical knowledge (GenPK), PCK and teacher practice. Our PCK instrument identified two factors within PCK: PCK-content knowledge and PCK-pedagogical knowledge. Teacher gains existed for all variables. Only GenPK had a significant relationship to teacher practice. ACK was the only variable that explained a substantial portion of student achievement. Our findings provide empirical evidence that we interpret through the lens of the model of teacher professional knowledge and skill, including PCK [Gess-Newsome, J. (2015). A model of teacher professional knowledge and skill including PCK: Results of the thinking from the PCK summit. In A. Berry, P. Friedrichsen, & J. Loughran (Eds.), <i>Re-examining pedagogical content knowledge in science education</i> (pp. 28–42). London: Routledge Press], highlighting the complexity of measuring teacher professional knowledge and skill.
DOI: 10.6084/m9.figshare.4534118.v5
title: Teacher pedagogical content knowledge, practice, and student achievement<sup>†</sup>

description: In this exploratory study, we attempted to measure potential changes in teacher knowledge and practice as a result of an intervention, as well as trace such changes through a theoretical path of influence that could inform a model of teacher professional knowledge. We created an instrument to measure pedagogical content knowledge (PCK), studied the impact of a two-year professional development intervention, explored the relationships among teacher variables to attempt to validate a model of teacher professional knowledge, and examined the relationship of teacher professional knowledge and classroom practice on student achievement. Teacher professional knowledge and skill was measured in terms of academic content knowledge (ACK), general pedagogical knowledge (GenPK), PCK and teacher practice. Our PCK instrument identified two factors within PCK: PCK-content knowledge and PCK-pedagogical knowledge. Teacher gains existed for all variables. Only GenPK had a significant relationship to teacher practice. ACK was the only variable that explained a substantial portion of student achievement. Our findings provide empirical evidence that we interpret through the lens of the model of teacher professional knowledge and skill, including PCK [Gess-Newsome, J. (2015). A model of teacher professional knowledge and skill including PCK: Results of the thinking from the PCK summit. In A. Berry, P. Friedrichsen, & J. Loughran (Eds.), <i>Re-examining pedagogical content knowledge in science education</i> (pp. 28–42). London: Routledge Press], highlighting the complexity of measuring teacher professional knowledge and skill.
DOI: 10.6084/m9.figshare.15094083
title: Supplemental Materials

description: Supplemental Materials for "Improving QSAR Modeling for Predictive Toxicology using Publicly Aggregated Semantic Graph Data and Graph Neural Networks".<br>Includes:<br>- Supplemental Tables S1 and S2 (separate sheets in the same .xlsx file)- Assay weights for GNNs trained on PXR antagonism and HepG2 cell viability assays (as 2 TSV files)- ROC plots for all 52 Tox21 assays investigated in the study (single ZIP archive containing separate PDF files for each assay)- Tabular summary of all models' performance on all 52 assays (TSV file)- Tabular summary statistics comparing means for two selected assays w.r.t the 3 QSAR models
DOI: 10.6084/m9.figshare.15094083.v1
title: Supplemental Materials

description: Supplemental Materials for "Improving QSAR Modeling for Predictive Toxicology using Publicly Aggregated Semantic Graph Data and Graph Neural Networks".<br>Includes:<br>- Supplemental Tables S1 and S2 (separate sheets in the same .xlsx file)- Assay weights for GNNs trained on PXR antagonism and HepG2 cell viability assays (as 2 TSV files)- ROC plots for all 52 Tox21 assays investigated in the study (single ZIP archive containing separate PDF files for each assay)- Tabular summary of all models' performance on all 52 assays (TSV file)- Tabular summary statistics comparing means for two selected assays w.r.t the 3 QSAR models
DOI: 10.6084/m9.figshare.16699147
title: Supplementary Material for: Serum biomarker status with a distinctive pattern in prognosis of gastroenteropancreatic neuroendocrine carcinoma

description: Medicine
DOI: 10.6084/m9.figshare.16699147.v1
title: Supplementary Material for: Serum biomarker status with a distinctive pattern in prognosis of gastroenteropancreatic neuroendocrine carcinoma

description: Medicine
DOI: 10.6084/m9.figshare.14390717
title: ROR Data Dump 8.0 (April 2021)

description: ROR data download. Based on GRID release 39: https://doi.org/10.6084/m9.figshare.14316596.<br>This is a previous version of https://doi.org/10.5281/zenodo.5534443.
DOI: 10.26207/04c5-6n98
title: Survey of pin use in entomological collections
DOI: 10.6084/m9.figshare.7578344
title: Thermoelectric properties of sorted semiconducting single-walled carbon nanotube sheets

description: Single-walled carbon nanotubes (SWNTs), especially their semiconducting type, are promising thermoelectric (TE) materials due to their high Seebeck coefficient. In this study, the in-plane Seebeck coefficient (<i>S</i>), electrical conductivity (<i>σ</i>), and thermal conductivity (<i>κ</i>) of sorted semiconducting SWNT (s-SWNT) free-standing sheets with different s-SWNT purities are measured to determine the figure of merit <i>ZT.</i> We find that the <i>ZT</i> value of the sheets increases with increasing s-SWNT purity, mainly due to an increase in Seebeck coefficient while the thermal conductivity remaining constant, which experimentally proved the superiority of the high purity s-SWNT as TE materials for the first time. In addition, from the comparison between sorted and unsorted SWNT sheets, it is recognized that the difference of <i>ZT</i> between unsorted SWNT and high-purity s-SWNT sheet is not remarkable, which suggests the control of carrier density is necessary to further clarify the superiority of SWNT sorting for TE applications.
DOI: 10.6084/m9.figshare.7578344.v2
title: Thermoelectric properties of sorted semiconducting single-walled carbon nanotube sheets

description: Single-walled carbon nanotubes (SWNTs), especially their semiconducting type, are promising thermoelectric (TE) materials due to their high Seebeck coefficient. In this study, the in-plane Seebeck coefficient (<i>S</i>), electrical conductivity (<i>σ</i>), and thermal conductivity (<i>κ</i>) of sorted semiconducting SWNT (s-SWNT) free-standing sheets with different s-SWNT purities are measured to determine the figure of merit <i>ZT.</i> We find that the <i>ZT</i> value of the sheets increases with increasing s-SWNT purity, mainly due to an increase in Seebeck coefficient while the thermal conductivity remaining constant, which experimentally proved the superiority of the high purity s-SWNT as TE materials for the first time. In addition, from the comparison between sorted and unsorted SWNT sheets, it is recognized that the difference of <i>ZT</i> between unsorted SWNT and high-purity s-SWNT sheet is not remarkable, which suggests the control of carrier density is necessary to further clarify the superiority of SWNT sorting for TE applications.
DOI: 10.6084/m9.figshare.12853074
title: Characterization of Est-SSR markers related to <i>Colletotrichum fructicola</i> infection in strawberry (<i>Fragaria</i> ×<i>ananassa</i> Duchase)

description: <i>Colletotrichum fructicola</i> causes strawberry anthracnose, which results in considerable economic losses in quality and production in Asia. However, the molecular mechanism of strawberry infection with <i>C. fructicola</i> is still poorly understood. Here, we employed RNA-Seq technology to mine the strawberry transcriptome for EST-SSRs (Expressed Sequence Tag–Simple Sequence Repeats) following <i>C. fructicola</i> infection. Fortunately, we detected 3019 potential EST-SSRs from the transcriptomic data of cv. Jiuxiang. The seven commonly occurring repeat motifs were A/T (278), GAA/TTC (263), GAG/CTC (215), AAG/CTT(188), GGA/TCC (163), AGA/TCT (153) and AGG/CCT (153). We identified 31, 84 and 129 differentially expressed EST-SSR-containing sequences corresponding to 24, 72 and 96 Hpi, while 13 DE-EST-SSRs -containing sequences were differentially expressed and common for all the three time points. Furthermore, we identified allele polymorphisms for some DE-EST-SSRs among several resistant and susceptible strawberry varieties and wild species. The EST-SSRs in our research were related to the reported QTL resistance loci in strawberry which are differentially expressed after <i>C. fructicola</i> infection and have allele polymorphisms in different strawberry varieties and wild species. These provide a clue for utilisation of the EST-SSRs in marker-assisted breeding to improve anthracnose-resistant breeding in future.