cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23728/b2share.2099059a958d49fca047295126310c5f
title: Participant dataset submitted by Hieranoid_2

description: Participant dataset submitted by participant Hieranoid_2 for 'Quest for Orthologs - 2020 Reference Proteomes' benchmarking event.
DOI: 10.23728/b2share.ffea8e91e0a4432482580881f9b57d3d
title: Predictions made by Domainoid+

description: Predictions made by participant Domainoid+ for 'Quest for Orthologs - 2020 Reference Proteomes' benchmarking event.
DOI: 10.5281/zenodo.5675192
title: Data for variance and covariance figure

description: Data for a figure that presents the variance and covariance for a true random walk. There is a comparison shown between the numerical result from 1024 unique random walks and the analysis, by kinisi, of the same 1024 random walks.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5281/zenodo.5675191
title: Data for variance and covariance figure

description: Data for a figure that presents the variance and covariance for a true random walk. There is a comparison shown between the numerical result from 1024 unique random walks and the analysis, by kinisi, of the same 1024 random walks.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5285/cc48c65d-5395-45a1-a60a-3a4b987fd673
title: Electron Electromagnetic Ion Cyclotron diffusion coefficients calculated from Van Allen Probe observations

description: Electromagnetic Ion Cyclotron (EMIC) wave are important for the losses of ultra-relativistic electrons from the Earth's radiation belts. In this work, statistical EMIC diffusion coefficients are calculated from Van Allen Probe A observations of EMIC waves from the entire mission. The diffusion coefficient calculations include the observed L* and activity dependent distributions in plasma density and wave spectra so that the wave-particle interactions modelled are representative of those in the radiation belts. These diffusion coefficients can be included into global radiation belt simulations such as the BAS radiation belt model. The study is published in Ross et al 2021, JGR: Space Physics. Funding was provided by National Environment Research Council Highlight Topic grant NE/P01738X/1 (Rad-Sat), National Environment Research Council grant NE/R016445/1 and NE/R016038/1.
description: Data sources: * OMNIWeb (https://omniweb.gsfc.nasa.gov) for the geomagnetic and solar wind indices. * Van Allen Probes data the Level 3 and Level 4 EMFISIS magnetometer data obtained from http://emfisis.physics.uiowa.edu/data/index.
description: Code: BAS-RBM (Glauert, S. A., Horne, R. B., and Meredith, N. P. (2014), Three-dimensional electron radiation belt simulations using the BAS Radiation Belt Model with new diffusion models for chorus, plasmaspheric hiss, and lightning-generated whistlers, J. Geophys. Res. Space Physics, 119, 268- 289, doi:10.1002/2013JA019281.) Code: PADIE (Glauert, S. A., and Horne, R. B. (2005), Calculation of pitch angle and energy diffusion coefficients with the PADIE code, J. Geophys. Res., 110, A04206, doi:10.1029/2004JA010851.)
description: The magnetometer data using in the study are converted in to spectra following the procedure described in the accompanying paper. EMIC waves were identified in the resulting spectra using a visual identification and machine learning, the method excluded features that cannot reliably be identified as EMIC waves.
DOI: 10.5281/zenodo.5675248
title: Data for diffusion coefficient and offset figures

description: Data for a figure that shows the distributions of the mean and varance of the diffusion coefficient and offset that are found from the analysis of 1024 unique random walks using kinisi. This is performed for both a truely random walk and a temporally anti-correlated random walk.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5281/zenodo.5675247
title: Data for diffusion coefficient and offset figures

description: Data for a figure that shows the distributions of the mean and varance of the diffusion coefficient and offset that are found from the analysis of 1024 unique random walks using kinisi. This is performed for both a truely random walk and a temporally anti-correlated random walk.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.15468/5ecayh
title: The genus Coricuma Watling & Breedy, 1988 (Crustacea, Cumacea, Bodotriidae) in Indonesian waters

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mühlenhardt-Siegel, Ute (2021): The genus Coricuma Watling & Breedy, 1988 (Crustacea, Cumacea, Bodotriidae) in Indonesian waters. Zootaxa 5061 (2): 393-400, DOI: https://doi.org/10.11646/zootaxa.5061.2.13
DOI: 10.25345/c5rk3b
title: MassIVE MSV000088348 - FLAG-HA-tagged GATA1 interactome analysis in MEL cells
title: GATA1 is the erythroid master transcription factor. We aimed to investigate interacting proteins of GATA1 in murine erythroleukemia (MEL) cells before and after induction of cell differentiation by DMSO treatment. MEL cells that stably expressed the FLAG-HA-tagged GATA1 protein were established by retroviral infection. The FLAG-HA-GATA1 cells as well as normal MEL cells as control were treated with or without 1.5% DMSO for 96 hrs to induce cell differentiation. After cell lysis, the lysates were subjected to anti-FLAG immunoprecipitation to isolate FLAG-HA-GATA1 and its interacting proteins. The isolated proteins were separated by SDS-PAGE, and every lane was divided into 11 gel pieces. Then the pieces were in-gel digested and were subjected to LC-MS/MS for protein identification. Every 11 raw data files derived from the same sample were converted into a single MGF file before database search. Raw files 180610-01 to 180610-11: control cell IP, without DMSO Raw files 180610-21 to 180610-31: FLAG-HA-GATA1 cell IP, without DMSO Raw files 180611-41 to 180611-51: control cell IP, with DMSO Raw files 180611-61 to 180611-71: FLAG-HA-GATA1 cell IP, with DMSO
DOI: 10.17632/ktrzjpj6jg.2
title: Final, Quantiative dataset

description: [updated Nov 5, 2021]
This is the raw data on the status of those non-Muslims that converted to Islam in Sindh over the past few decades. The sources, included conversion certificates, registers of the converts maintained by religious clerics, audio and video interviews, court judgements, petitions filed by neo converts against their parents, CNICs, Marriage certificates etc.  The data was gathered by Ghulam Hussain, Senior Research Officer at the Institute of Policy Studies (IPS), Islamabad.
DOI: 10.17632/7k5zydy43g.1
title: Adult mosquito collection data sheet

description: Adult mosquitoes collection data sheet for wild population  from field
DOI: 10.17632/2s2m5npfn6.1
title: Precedex Brain Injury

description: Histopathological and Semi-quantitative analysis
DOI: 10.17632/zhycjy7p5p.1
title: Provenance of the Paleozoic to Mesozoic siliciclastic rocks of the Istanbul Zone: detrital zircon U-Pb ages and Lu-Hf isotope data

description: This dataset includes U-Pb detrital zircon ages and Lu-Hf analyses from a provenance study on the Paleozoic to Mesozoic siliciclastic rocks of the Istanbul Zone, NW Turkey.
DOI: 10.17632/m6v9rcprz6.1
title: Transcription-wide mapping of dihydrouridine (D) reveals that mRNA dihydrouridylation is essential for meiotic chromosome segregation. Finet et al.

description: Unprocessed images of gels and blots. The section of the image used to make the figure is highlighted in red and the corresponding Figure and panel number is indicated below.
DOI: 10.17632/cbgkh27fyk.1
title: Live imaging and quantitation of insect feeding-induced Ca2+ signal using GCaMP3-based system in Nicotiana benthamiana

description: Detailed setting parameters of LFSM, used to image the sample dataset, related to step 9-14.
DOI: 10.17632/nvk2frffm7.1
title: ACA-21-1395: The data of an all-solid-state acupuncture needle based potentiometric microelectrode for in vivo monitoring of calcium ions in rat cerebrospinal fluid 

description: As a common tool in traditional Chinese medicine, acupuncture needle is an ideal materiel for the development of all-solid-state potentiometric microelectrode for its small tip with micro size. These data contain the details of the fabrication of the calcium ion-selective microelectrode (Ca2+-ISμEs) modified with poly(3,4-ethylenedioxythiophene)-poly(sodium 4-styrenesulfonate) (PEDOT(PSS)) as solid contact. The scanning electron microscope (SEM) images contain the microtopography of the PEDOT(PSS) film. The cyclic voltammetry and electrochemical impedance spectroscopy were carried out for the investigation of the low-frequency capacitance, and the resistance of the microelectrode before and after the modification. The thickness of the solid contact and the calcium ion-selective membrane was investigated by SEM. Potential-time curve of the electrodeposition of the PEDOT/PSS film onto the surface of the microelectrodes under the applied current of 0.5 μA for 200 s was recorded. The condition of the proposed Ca2+-ISμE was optimized through conditioning in different CaCl2 solutions ranged from 1.0 × 10-6 to 3.1 × 10-3 M for different time. The electromotive force measurements were carried out for the investigation of the detection limit, reproductivity, selectivity coefficient against other ions, short- and long-term potential stability. The anti-fouling property of the Ca2+-ISμEs against proteins was investigated through taking BSA as the model protein. The developed Ca2+-ISμEs were used for the in vivo monitoring of the calcium ions in rat cerebrospinal fluid under the stimuli of the spinal cord transection in a living animal.
DOI: 10.17632/tszvwzkckh.1
title: Computational simulation data and FORTRAN code to compare the stress response of two transversely isotropic hyperelastic models in ABAQUS

description: We presented the numerical simulation data obtained by implementing a user material subroutine (UMAT) in the finite element commercial package ABAQUS. The simulation data correspond to the stress response of two transversely isotropic hyperelastic models on homogeneous and non-homogeneous deformations.  The first model depends on both anisotropic invariants (I4 and I5) to describe the fiber reinforcement. The second model only depends on the anisotropic invariant I4. Since the first model is not found in the ABAQUS material library, we presented a FORTRAN code for a UMAT subroutine
DOI: 10.17632/sxndp9wpbx.1
title: Mass Spectrometric analysis of FLAG-HA-CDK9 complex

description: Mass Spectrometric analysis of FLAG-HA-CDK9 complex purified from mammalian 293T cells
DOI: 10.17632/hdy8xxk3mg.1
title: The impact of financial stress shocks on commodity prices

description: In this folder, you can find three subfolders with data and codes to replicate the tables and figures in the paper of "The impact of financial stress shocks on commodity prices".
DOI: 10.17632/gbk48tsnxf.1
title: Ultrahigh Strength Ultrapure Nanostructured Nickel Metal Prepared via Ultrafine Anode Scanning Electrodeposition

description: •	The existed synthesis methods for producing high microhardness nanostructured metal materials (NMMs) usually at the cost of reducing the tensile strength and introducing heterogeneous elements, thus making forming ultrahigh strength ultrapure NMMs significantly challengeable. We unprecedentedly produced ultrapure (99.9997%) nickel deposits simultaneously with an ultrahigh strength and mirror-like surfaces as well as an appreciably high ductility by using our proposed ultrafine anode scanning electrodeposition (UAS-ECD). Distinctively, the UAS-ECD is a speed-controlled pulsed voltage electrodeposition rather than a commonly-used time-controlled pulsed current electrodeposition. Therefore, the UAS-ECD can create NMMs at extremely high local current densities and with no additives. This makes it achievable to generate ultrahigh strength ultrapure NMMs with microhardness of 656 HV and tensile strength of 664 MPa (fracture elongation, 8.5%), which are respectively 29% and 30% higher than those reported in the literature. Also surprisingly, their tensile strength has only approximately 1% reduction after being annealed. This is attributed to minimum impurities introduction and evenly distributed ultrafine grains formed. In addition, UAS-ECD is able to produce grain-varying deposits just by adjusting the anode’s scanning speed, conveniently achieving 65 wt.%-95 wt.% nano-& micro-sized grains composite NMMs. This work provides a novel strategy for synthesizing ultrahigh strength ultrapure NMMs.
DOI: 10.17632/h6fj4w9fht.2
title: Mineralogy and geochemistry of modern Red River sediments: provenance and weathering implications-data

description: This data store is only for submission to Marine Geology.
DOI: 10.17632/wvy57r8dvt.1
title: Difusão de Resultados Científicos do Campo da Música Ubíqua em Website

description: Projeto de pesquisa elaborado no âmbito da disciplina “aplicações educacionais da música pós-2020: da criatividade cotidiana à música ubíqua”, ministrada pelo Prof. Dr. Damián Keller no contexto pedagógico do Programa de Pós-Graduação em Música da Universidade Federal da Paraíba (PPGM/ UFPB).
DOI: 10.17632/brt3myjxbm.2
title: WMSD among Bus Drivers and Conductors

description: An SPSS spreadsheet of the raw data used for analysis
DOI: 10.17632/wv2rpt2mtn.1
title: Health information encountering on social media (survey)

description: Survey data: health information encountered by social media users in their 20s and the factors (environmental, personal, network) that affect these encounters
DOI: 10.17632/dst6kgsz5s.1
title: Evidence on the seismic effect along the Littoral Fault Zone offshore Hong Kong-Macao Greater Bay Area

description: Seismic data for the Littoral Fault Zone offshore Hong Kong-Macao Greater Bay Area
DOI: 10.17632/228pwkw55h.1
title: Elemental analysis XRF of inks (1778-1825) 

description: This file contains raw data: the first sheet with spectra counts and a second sheet with ppm results of XRF analysis.
DOI: 10.17632/6knkwdcxb6.2
title: Radiolarian data from the submarine Vityaz Ridge, Northwest Pacific, for biostratigraphic and paleoceanographic reconstructions_Tables

description: This report presents a dataset obtained from radiolarian analysis for the biostratigraphic and paleoceanographic reconstructions of the paraxial zone of the Kuril-Kamchatka Trench and the submarine Vityaz Ridge, which is a structural part of the Kuril-Kamchatka island arc-trench system. 
Table 1 shows the dredge samples in which the Pleistocene radiolarian zones were identified. The total radiolarian abundance, quantitative analysis of high-rank radiolarian taxa (Spumellaria, Nassellaria, and Collodaria), and other unidentified radiolaria are also noted in this table. 
Table 2 provides a taxonomic list of radiolaria identified in the dredge samples of the submarine Vityaz Ridge and the paraxial zone of the Kuril-Kamchatka Trench. The genera and species richness of Spumellaria, Nassellaria, and Collodaria are also indicated.
Table 3 provides information on the distribution of the Cycladophora sphaeris Zone, Eucyrtidium matuyamai Zone, Stylatractus universes Zone, and Lychnocanoma sakaii Zone in the North Pacific. The table shows the deep-water drilling sites, sediment core, and dredge sites at which these zones were found.
DOI: 10.17632/tfmzjdkxh6.1
title: Metaviromic identification of discriminative genomic features in SARS-CoV-2 using machine learning. Park et al.

description: The COVID-19 pandemic caused by SARS-CoV-2 has become a major threat across the globe. Here, we developed machine learning approaches to identify key pathogenic regions in coronavirus genomes. We trained and evaluated 7,562,625 models on 3,665 genomes including SARS-CoV-2, MERS-CoV, SARS-CoV and other coronaviruses of human and animal origins to return quantitative and biologically interpretable signatures at nucleotide and amino acid resolutions. We identified hotspots across the SARS-CoV-2 genome including previously unappreciated features in spike, RdRp and other proteins. Finally, we integrated pathogenicity genomic profiles with B cell and T cell epitope predictions for enrichment of sequence targets to help guide vaccine development. These results provide a systematic map of predicted pathogenicity in SARS-CoV-2 that incorporates sequence, structural and immunological features, providing an unbiased collection of genetic elements for functional studies. This metavirome-based framework can also be applied for rapid characterization of new coronavirus strains or emerging pathogenic viruses.
DOI: 10.17632/px3scyg968.2
title: Data from: Where are the males? The influence of bottom-up, top-down factors and sociability on the spatial distribution of a territorial ungulate

description: Data corresponding to the article:
Where are the males? The influence of bottom-up, top-down factors and sociability on the spatial distribution of a territorial ungulate.
Panebianco, A.1*; Gregorio, P.1; Schroeder, N.M.2; Marozzi, A.1; Ovejero, R. 3, 4; Heidel, L.5; Peña, F.1, 2; Leggieri, L.R.1; Taraborelli, P.A.6; Carmanchahi, P.D.1.
1 Grupo de Investigación de Eco-Fisiología de Fauna Silvestre (GIEFAS), Asentamiento Universitario de San Martín de los Andes (AUSMA), Universidad Nacional del
Comahue (CONICET-INIBIOMA-AUSMA-UNCo), Neuquén, Argentina.
2 Instituto Argentino de Investigaciones de las Zonas Áridas (IADIZA), CONICET, Mendoza, Argentina
3 Instituto de Ecología Regional, IER-CONICET-UNT, Tucumán, Argentina.
4 Laboratorio de Ecología Conductual, Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile 
5Wildlife Conservation Society, Argentina
6 CONICET-Centro Regional Buenos Aires Sur, INTA Barrow, Tres Arroyos, Argentina
*Corresponding author: Antonella Panebianco
DOI: 10.17632/dp3f425kkf.2
title: Active Pharmaceutical Ingredients from Brazilian Pharmacopeia in PDBQT format, for docking with AutoDock e Vina Tools

description: Active Pharmaceutical Ingredients (APIs) are molecules that can be used for the manufacturing of Drugs. The Brazilian Health Regulatory Agency (Agência Nacional de Vigilância Sanitária) is responsible for the oversight and approval of production and distribution of all drugs in Brazilian territory. The dataset containing PDBQT format files, with correct protonation states for pH 7.4 is useful for in silico molecular docking with AutoDock e Vina Tools.
DOI: 10.17632/3psr2g4s7r.1
title: Gutter Datasets and Bollards

description: The gutter dataset contains 85 images of the uncovered gutter object and their annotations, while the bollard dataset has 150 images of multiple bollard objects and their annotations. The gutter is 245 x 326 pixels in size, while the bollards are 400 x 300 pixels, each bollard image has multiple items. The resolution of each image contained in the gutter and bollard dataset is 96dpi. The text files hold the coordinate values of each object (<class id> <Xo/X> <Yo/Y> <W/X> <H/Y>), which represents the predefined bounding box during the annotation. The dataset would be suitable for image recognition researches.
DOI: 10.17632/snzrkfrg7x.3
title: Active Pharmaceutical Ingredients from Brazilian Pharmacopeia in 2Dsdf, 3Dsdf and Mol2 format

description: Active Pharmaceutical Ingredients (APIs) are molecules that can be used for the manufacturing of Drugs. The Brazilian Health Regulatory Agency (Agência Nacional de Vigilância Sanitária) is responsible for the oversight and approval of production and distribution of all drugs in Brazilian territory. The dataset containing 2Dsdf, 3Dsdf and Mol2 format files may be useful in a vast range of in silico techniques.

“APIs Anvisa sdf” is composed of 2D sdf format files, obtained from PubChem or DrugBank databases, where the download of the molecules were made manually and individually;
“APIs Anvisa MOL2” is composed of mol2 format files;
“APIs Anvisa 3Dsdf” having three-dimensional structures in sdf format.

The data conversion was made by using the OpenBabel and Marvin software.
DOI: 10.5281/zenodo.5675343
title: SciExpeM - 10.5281/zenodo.5675343

description: Kukkadapu, Goutham; Kang, Dongil; Wagnon, Scott W.; Zhang, Kuiwen; Mehl, Marco; Monge-Palacios, M.; Wang, Heng; Goldsborough, S. Scott; Westbrook, Charles K.; Pitz, William J. - Proceedings Of The Combustion Institute, 2019, (37), 521-529
DOI: 10.5281/zenodo.5675342
title: SciExpeM - 10.5281/zenodo.5675343

description: Kukkadapu, Goutham; Kang, Dongil; Wagnon, Scott W.; Zhang, Kuiwen; Mehl, Marco; Monge-Palacios, M.; Wang, Heng; Goldsborough, S. Scott; Westbrook, Charles K.; Pitz, William J. - Proceedings Of The Combustion Institute, 2019, (37), 521-529
DOI: 10.5281/zenodo.5674798
title: Cognitive Performance in Remote Work - Evidence from Professional Chess

description: Replication package for article "Cognitive Performance in Remote Work - Evidence from Professional Chess" in Economic Journal. Last Working paper version: https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3937878.
DOI: 10.5281/zenodo.5674797
title: Cognitive Performance in Remote Work - Evidence from Professional Chess

description: Replication package for article "Cognitive Performance in Remote Work - Evidence from Professional Chess" in Economic Journal. Last Working paper version: https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3937878.
DOI: 10.21942/uva.16988527
title: Dataset for "Extreme Value Estimation for Heterogeneous Data"

description: This dataset is used in the empirical analysis.<br>The dataset was generated and tested on MATLAB R2021a.<br>
DOI: 10.14457/tu.the.2020.513
title: Master surgical scheduling for multi-surgeon cases using a genetic algorithm

description: In this thesis, we propose a mixed-integer linear programming (MILP) model and a genetic algorithm (GA) to build a master surgical scheduling (MSS) for a case study of a large-sized Thai public hospital. Due to the large number of surgeries which must be handled each day, our main objective is to construct a schedule which maximizes the OR utilization, minimizes the room idle time between surgical cases, and minimizes the room overtime. The data from Tham- masat University Hospital were analyzed and simulated to generate a timetable from daily to weekly schedule. Our results show that an exact solution can be obtained by MILP for a simple problem while a large CPU run time is incurred for larger problems. GA provided the optimal solution for a complex large-scale problem after a chromosome elimination technique and the diversity rank were applied in the evolution process to overcome the local minima. We also simulated three different scenarios by varying the weights of idle time and overtime in the objective function. The first scenario is used when the surgery can be performed in working hours or overtime without considering the cost. The second scenario is used when the surgery can be scheduled during or after the working time with an room opening cost and overtime pay. The third scenario is used to arrange all surgeries with the maximum number of surgeries performed in the working hours. The performance of the proposed methods was compared to the actual schedule of the hospital. The results indicated that overtime and idle time are significantly improved in the schedule provided by proposed GA. Moreover, the schedule is more flexible and the staff can improve it to obtain more practical timetable in real situations, such as increasing the number of surgeries, setting a time block for specific surgical specialties, and handling emergency cases.