cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7676378.v1
title: Pressure Overload-induced Cardiac Hypertrophy Varies According to Different Ligation Needle Sizes and Body Weights in Mice

description: Abstract Background: The cardiac hypertrophy (CH) model for mice has been widely used, thereby providing an effective research foundation for CH exploration. Objective: To research the effects of CH modeling under abdominal aortic constriction (AAC) using different needles and weights in mice. Methods: Four needles with different external diameters (0.35, 0.40, 0.45, and 0.50 mm) were used for AAC. 150 male C57BL/6 mice were selected according to body weight (BW) and divided into 3 weight levels: 18 g, 22 g, and 26 g (n = 50 in each group). All weight levels were divided into 5 groups: a sham group (n = 10) and 4 AAC groups using 4 ligation intensities (n = 10 per group). After surgery, survival rates were recorded, echocardiography was performed, hearts were dissected and used for histological detection, and data were statistically analyzed, P &lt; 0.05 was considered statistically significant. Results: All mice died in the following AAC groups: 18g/0.35 mm, 22 g/0.35 mm, 26 g/0.35 mm, 22 g/0.40 mm, and 26 g/0.40 mm. All mice with AAC, those ligated with a 0.50-mm needle, and those that underwent sham operation survived. Different death rates occurred in the following AAC groups: 18 g/0.40 mm, 18 g/0.45 mm, 18 g/0.50 mm, 22 g/45 mm, 22 g/0.50 mm, 26 g/0.45 mm, and 26 g/0.50 mm. The heart weight/body weight ratios (5.39 ± 0.85, 6.41 ± 0.68, 4.67 ± 0.37, 5.22 ± 0.42, 4.23 ± 0.28, 5.41 ± 0.14, and 4.02 ± 0.13) were significantly increased compared with those of the sham groups for mice with the same weight levels. Conclusion: A 0.45-mm needle led to more obvious CH than did 0.40-mm and 0.50-mm needles and caused extraordinary CH in 18-g mice.
DOI: 10.6084/m9.figshare.11870664.v1
title: Additional file 4 of Phytochemical and comparative transcriptome analyses reveal different regulatory mechanisms in the terpenoid biosynthesis pathways between Matricaria recutita L. and Chamaemelum nobile L.

description: Additional file 4. Information from the PPIN related to the terpenoid biosynthetic pathway in German chamomile and Roman chamomile.
DOI: 10.6084/m9.figshare.11870673
title: Additional file 5 of Phytochemical and comparative transcriptome analyses reveal different regulatory mechanisms in the terpenoid biosynthesis pathways between Matricaria recutita L. and Chamaemelum nobile L.

description: Additional file 5. KEGG analysis of unigenes specific to German chamomile and Roman chamomile.
DOI: 10.6084/m9.figshare.11870712
title: Additional file 6 of Uric acid induced hepatocytes lipid accumulation through regulation of miR-149-5p/FGF21 axis

description: Additional file 6: Table S2. Differential expressed miRNAs identified by microarray analysis of liver samples from SCD, HFD and HFD + A fed mice.
DOI: 10.6084/m9.figshare.14490337
title: Additional file 3 of Identification of novel prognostic biomarkers by integrating multi-omics data in gastric cancer

description: Additional file 3. Contains 4 TFs and 5 miRNAs were confirmed by enrichment.
DOI: 10.6084/m9.figshare.11870781
title: Additional file 11 of Single-nucleus RNA-seq identifies Huntington disease astrocyte states

description: Additional file 11. Differential correlation analysis between astrocytic genes in HD and control
DOI: 10.6084/m9.figshare.6627860
title: Additional file 1: of In Situ Growth of Metal Sulfide Nanocrystals in Poly(3-hexylthiophene): [6,6]-Phenyl C61-Butyric Acid Methyl Ester Films for Inverted Hybrid Solar Cells with Enhanced Photocurrent

description: Figure S1. SEM images of (a) ITO, (b) CdS thin films on ITO, and (c) Sb2S3 thin films on ITO. Figure S2 SEM images of (a) P3HT:PC61BM, (b) P3HT:PC61BM:3 wt.% CdS, and (c) P3HT:PC61BM:3 wt.% Sb2S3 films on ITO substrates. (ZIP 3399 kb)
DOI: 10.6084/m9.figshare.11870703
title: Additional file 5 of Uric acid induced hepatocytes lipid accumulation through regulation of miR-149-5p/FGF21 axis

description: Additional file 5: Table S1. Primer sequences of genes analyzed by Real-time PCR.
DOI: 10.6084/m9.figshare.11870703.v1
title: Additional file 5 of Uric acid induced hepatocytes lipid accumulation through regulation of miR-149-5p/FGF21 axis

description: Additional file 5: Table S1. Primer sequences of genes analyzed by Real-time PCR.
DOI: 10.6084/m9.figshare.11870823
title: Additional file 17 of Single-nucleus RNA-seq identifies Huntington disease astrocyte states

description: Additional file 17. Microglial genes shown in heatmap of figure S6A
DOI: 10.6084/m9.figshare.11870844.v1
title: Additional file 4 of Single-nucleus RNA-seq identifies Huntington disease astrocyte states

description: Additional file 4. Supplementary Data. (1) Raw counts and RPKM counts of Bulk RNAseq data. (2)Results of differential gene expression analysis of each astrocytic cluster against all other clusters.
DOI: 10.6084/m9.figshare.23405129
title: Chorus wave amplitude and diffusion coefficients during 17-19 March 2013 geomagnetic storm

description: This is the dataset of chorus diffusion coefficients during the geomagnetic storm of 17 - 19 March 2013. The dataset includes total electron density, chorus wave amplitude, and diffusion coefficient matrix as a function of time, L shell, MLT, pitch angle, and energy. The diffusion coefficient matrix was used in the modeling of Ma et al. (2018), where more detailed methodology is described.
<br>
Ma, Q., Li, W., Bortnik, J., Thorne, R. M., Chu, X., Ozeke, L. G., et al. (2018). Quantitative evaluation of radial diffusion and local acceleration processes during GEM challenge events. Journal of Geophysical Research: Space Physics, 123, 1938– 1952. https://doi.org/10.1002/2017JA025114
DOI: 10.6084/m9.figshare.6627965.v1
title: Additional file 5: of Comparative analysis of single-stranded DNA donors to generate conditional null mouse alleles

description: Figure S2. A, B. Frequency distributions of (A) projects with conditional, null, or both allele types, and (B) projects with loxP in cis, in trans, or both, binned by loxP distance. Project results derived from genotyping information gathered from F0 (A) and N1 (B) mice. LoxP distance calculated from genomic distance between Cas9 cut site of each sgRNA. X-axis labels indicate the median value of each bin. (A) Left Y-axis depicts the number of animals screened for each loxP distance bin, while the right Y-axis depicts the allele percentage within each loxP distance bin. (B) Left Y-axis depicts the number of founders bred for each loxP distance bin, while the right Y-axis depicts the transmission percentage for all projects within each loxP distance bin. (XLSX 254 kb)
DOI: 10.6084/m9.figshare.7676378
title: Pressure Overload-induced Cardiac Hypertrophy Varies According to Different Ligation Needle Sizes and Body Weights in Mice

description: Abstract Background: The cardiac hypertrophy (CH) model for mice has been widely used, thereby providing an effective research foundation for CH exploration. Objective: To research the effects of CH modeling under abdominal aortic constriction (AAC) using different needles and weights in mice. Methods: Four needles with different external diameters (0.35, 0.40, 0.45, and 0.50 mm) were used for AAC. 150 male C57BL/6 mice were selected according to body weight (BW) and divided into 3 weight levels: 18 g, 22 g, and 26 g (n = 50 in each group). All weight levels were divided into 5 groups: a sham group (n = 10) and 4 AAC groups using 4 ligation intensities (n = 10 per group). After surgery, survival rates were recorded, echocardiography was performed, hearts were dissected and used for histological detection, and data were statistically analyzed, P &lt; 0.05 was considered statistically significant. Results: All mice died in the following AAC groups: 18g/0.35 mm, 22 g/0.35 mm, 26 g/0.35 mm, 22 g/0.40 mm, and 26 g/0.40 mm. All mice with AAC, those ligated with a 0.50-mm needle, and those that underwent sham operation survived. Different death rates occurred in the following AAC groups: 18 g/0.40 mm, 18 g/0.45 mm, 18 g/0.50 mm, 22 g/45 mm, 22 g/0.50 mm, 26 g/0.45 mm, and 26 g/0.50 mm. The heart weight/body weight ratios (5.39 ± 0.85, 6.41 ± 0.68, 4.67 ± 0.37, 5.22 ± 0.42, 4.23 ± 0.28, 5.41 ± 0.14, and 4.02 ± 0.13) were significantly increased compared with those of the sham groups for mice with the same weight levels. Conclusion: A 0.45-mm needle led to more obvious CH than did 0.40-mm and 0.50-mm needles and caused extraordinary CH in 18-g mice.
DOI: 10.5281/zenodo.10675419
title: Passeriformes (passerine)

description: The mean clutch size and additional information on hatchling success, fledging success, incubation duration, and habitat type are compiled for the 30 species within the taxonomic group Passeriformes (passerine), also known as perching birds. The data is taken from global locations and has been compiled to review differences within clutch size due to environmental differences such as climate. It is already mentioned that tropical birds reproduce a smaller clutch due to higher annual survival than birds in temperate regions (Muñoz et al., 2018 & Young, 1996). Therefore, with climates changing globally, it is interesting to review whether clutch sizes in temperate and tropical regions change over time. With biodiversity changing across the globe, will the passerine species have to adapt to the new environment by changing their clutch sizes?

To find the dataset I used the search engines google scholar, science direct, Web of Science and Scopus. I searched for the key words, clutch size and the species name. I made a list of species from the passerine group by using google.
DOI: 10.5281/zenodo.10675420
title: Passeriformes (passerine)

description: The mean clutch size and additional information on hatchling success, fledging success, incubation duration, and habitat type are compiled for the 30 species within the taxonomic group Passeriformes (passerine), also known as perching birds. The data is taken from global locations and has been compiled to review differences within clutch size due to environmental differences such as climate. It is already mentioned that tropical birds reproduce a smaller clutch due to higher annual survival than birds in temperate regions (Muñoz et al., 2018 & Young, 1996). Therefore, with climates changing globally, it is interesting to review whether clutch sizes in temperate and tropical regions change over time. With biodiversity changing across the globe, will the passerine species have to adapt to the new environment by changing their clutch sizes?

To find the dataset I used the search engines google scholar, science direct, Web of Science and Scopus. I searched for the key words, clutch size and the species name. I made a list of species from the passerine group by using google.
DOI: 10.6084/m9.figshare.11870865.v1
title: Additional file 9 of Single-nucleus RNA-seq identifies Huntington disease astrocyte states

description: Additional file 9. Differential gene expression between control and HD Astrocytic nuclei, GO term enriched in top differentially upregulated and downregulated genes
DOI: 10.6084/m9.figshare.6627950.v1
title: Additional file 4: of Comparative analysis of single-stranded DNA donors to generate conditional null mouse alleles

description: Table S3. Fisherâ s Exact Test calculation to determine significance of obtaining a founder vs. no founder between symmetric and asymmetric homology arm designs for targeting loxP sites. Table S4. Fisherâ s Exact Test calculation to determine significance of obtaining loxP sites in cis vs. loxP sites in trans between symmetric and asymmetric homology arm designs for targeting loxP sites. Table S5. Fisherâ s Exact Test calculation to determine significance of obtaining loxP sites in cis, non-mutated vs. loxP sites in cis, mutated between symmetric and asymmetric homology arm designs for targeting loxP sites. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.6627995
title: Additional file 7: of Comparative analysis of single-stranded DNA donors to generate conditional null mouse alleles

description: Table S6. Location, sequence, mismatch number, and primer sequences for off-target sites listed by gene. When necessary, sequencing primer sequences are also listed for off-target sites. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.11870832.v1
title: Additional file 2 of Single-nucleus RNA-seq identifies Huntington disease astrocyte states

description: Additional file 2. Genes used in gene set enrichment analysis [10], in cell classifier, and discovered cell-type marker genes based on single nuclei RNAseq data
DOI: 10.6084/m9.figshare.14490379
title: Additional file 2 of lncRNA APOC1P1-3 promoting anoikis-resistance of breast cancer cells

description: Additional file 2: Table S5. The patient information.
DOI: 10.6084/m9.figshare.7676471
title: Catalytic Cracking of Soybean Oil for Biofuel over γ-Al2O3/CaO Composite Catalyst

description: In this paper, we report the catalytic cracking of soybean oil for biofuel over γ-Al2O3/CaO composite catalysts. The influence of catalysts, cracking temperature and weight hourly space velocity (WHSV) on the products distribution were investigated. The maximum yield (70.0 wt.%) of biofuel with low acid value (6.7 mg KOH g-1) and oxygen content (5.6%), as well as high calorific value (44.2 MJ kg-1) was achieved over 35 wt.% γ-Al2O3/CaO at 480 ºC and 3.72 h-1. The paper focused on the variation of biofuel composition and cracking pathway caused by γ-Al2O3/CaO composite catalysts via gas chromatography-mass spectrometry (GC-MS) and thermogravimetric (TG) analysis. Calcium oxide would react with fatty acid to yield calcium carboxylates at 300-350 ºC, which were subsequently decomposed into hydrocarbons (57.9 wt.%) and ketones (22.6 wt.%) at 415-510 ºC. As for 35 wt.% γ-Al2O3/CaO, the addition of γ-Al2O3 was beneficial to generate alkenes (38.2 wt.%), arenes (10.6 wt.%) and alcohols (12.3 wt.%) with ketones decreasing (16.5 wt.%) via γ-hydrogen transfer reaction and disproportination.
DOI: 10.6084/m9.figshare.6627995.v1
title: Additional file 7: of Comparative analysis of single-stranded DNA donors to generate conditional null mouse alleles

description: Table S6. Location, sequence, mismatch number, and primer sequences for off-target sites listed by gene. When necessary, sequencing primer sequences are also listed for off-target sites. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.6628025
title: MOESM7 of Comparative liver transcriptome analysis in ducklings infected with duck hepatitis A virus 3 (DHAV-3) at 12 and 48Â hours post-infection through RNA-seq

description: Additional file 7. Description of all genes in the livers of ducklings at 12Â hpi. Structure, expression level, difference information, and annotation information for all genes at 12Â hpi are described.
DOI: 10.6084/m9.figshare.14490415
title: Additional file 2 of The evolution of opsin genes in five species of mirid bugs: duplication of long-wavelength opsins and loss of blue-sensitive opsins

description: Additional file 2. Sequences used for phylogenetic and selection analyses.
DOI: 10.6084/m9.figshare.6627950
title: Additional file 4: of Comparative analysis of single-stranded DNA donors to generate conditional null mouse alleles

description: Table S3. Fisherâ s Exact Test calculation to determine significance of obtaining a founder vs. no founder between symmetric and asymmetric homology arm designs for targeting loxP sites. Table S4. Fisherâ s Exact Test calculation to determine significance of obtaining loxP sites in cis vs. loxP sites in trans between symmetric and asymmetric homology arm designs for targeting loxP sites. Table S5. Fisherâ s Exact Test calculation to determine significance of obtaining loxP sites in cis, non-mutated vs. loxP sites in cis, mutated between symmetric and asymmetric homology arm designs for targeting loxP sites. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.6627965
title: Additional file 5: of Comparative analysis of single-stranded DNA donors to generate conditional null mouse alleles

description: Figure S2. A, B. Frequency distributions of (A) projects with conditional, null, or both allele types, and (B) projects with loxP in cis, in trans, or both, binned by loxP distance. Project results derived from genotyping information gathered from F0 (A) and N1 (B) mice. LoxP distance calculated from genomic distance between Cas9 cut site of each sgRNA. X-axis labels indicate the median value of each bin. (A) Left Y-axis depicts the number of animals screened for each loxP distance bin, while the right Y-axis depicts the allele percentage within each loxP distance bin. (B) Left Y-axis depicts the number of founders bred for each loxP distance bin, while the right Y-axis depicts the transmission percentage for all projects within each loxP distance bin. (XLSX 254 kb)
DOI: 10.6084/m9.figshare.11870847
title: Additional file 5 of Single-nucleus RNA-seq identifies Huntington disease astrocyte states

description: Additional file 5. Results of differential gene expression analysis of Bulk RNAseq controled for age and gender with log fold change threshold of 1.5
DOI: 10.6084/m9.figshare.6628010.v1
title: MOESM6 of Comparative liver transcriptome analysis in ducklings infected with duck hepatitis A virus 3 (DHAV-3) at 12 and 48Â hours post-infection through RNA-seq

description: Additional file 6. Genes expressed only in the livers of ducklings at 48Â hpi. Compared with the control group, genes expressed only in the livers of ducklings at 48Â hpi.
DOI: 10.6084/m9.figshare.6628025.v1
title: MOESM7 of Comparative liver transcriptome analysis in ducklings infected with duck hepatitis A virus 3 (DHAV-3) at 12 and 48Â hours post-infection through RNA-seq

description: Additional file 7. Description of all genes in the livers of ducklings at 12Â hpi. Structure, expression level, difference information, and annotation information for all genes at 12Â hpi are described.
DOI: 10.6084/m9.figshare.14490379.v1
title: Additional file 2 of lncRNA APOC1P1-3 promoting anoikis-resistance of breast cancer cells

description: Additional file 2: Table S5. The patient information.
DOI: 10.6084/m9.figshare.6627860.v1
title: Additional file 1: of In Situ Growth of Metal Sulfide Nanocrystals in Poly(3-hexylthiophene): [6,6]-Phenyl C61-Butyric Acid Methyl Ester Films for Inverted Hybrid Solar Cells with Enhanced Photocurrent

description: Figure S1. SEM images of (a) ITO, (b) CdS thin films on ITO, and (c) Sb2S3 thin films on ITO. Figure S2 SEM images of (a) P3HT:PC61BM, (b) P3HT:PC61BM:3 wt.% CdS, and (c) P3HT:PC61BM:3 wt.% Sb2S3 films on ITO substrates. (ZIP 3399 kb)
DOI: 10.6084/m9.figshare.6627992
title: MOESM4 of Comparative liver transcriptome analysis in ducklings infected with duck hepatitis A virus 3 (DHAV-3) at 12 and 48Â hours post-infection through RNA-seq

description: Additional file 4. Differentially expressed genes in the uninfected and 48Â hpi duckling livers. The list of all differentially expressed genes in the livers of ducklings in the control group and 48Â hpi group.
DOI: 10.6084/m9.figshare.6628001
title: MOESM5 of Comparative liver transcriptome analysis in ducklings infected with duck hepatitis A virus 3 (DHAV-3) at 12 and 48Â hours post-infection through RNA-seq

description: Additional file 5. Genes expressed only in the livers of ducklings at 12Â hpi. Compared with the control group, genes expressed only in the livers of ducklings at 12Â hpi.
DOI: 10.6084/m9.figshare.6628010
title: MOESM6 of Comparative liver transcriptome analysis in ducklings infected with duck hepatitis A virus 3 (DHAV-3) at 12 and 48Â hours post-infection through RNA-seq

description: Additional file 6. Genes expressed only in the livers of ducklings at 48Â hpi. Compared with the control group, genes expressed only in the livers of ducklings at 48Â hpi.
DOI: 10.6084/m9.figshare.11870790.v1
title: Additional file 12 of Single-nucleus RNA-seq identifies Huntington disease astrocyte states

description: Additional file 12. Astrocytic gene co-expression modules, module information, module genes, GO term enrichment in modules
DOI: 10.6084/m9.figshare.6627974
title: MOESM3 of Comparative liver transcriptome analysis in ducklings infected with duck hepatitis A virus 3 (DHAV-3) at 12 and 48Â hours post-infection through RNA-seq

description: Additional file 3. Differentially expressed genes in the uninfected and 12Â hpi duckling livers. The list of all differentially expressed genes in the livers of ducklings in the control group and 12Â hpi group.
DOI: 10.6084/m9.figshare.6628040
title: MOESM8 of Comparative liver transcriptome analysis in ducklings infected with duck hepatitis A virus 3 (DHAV-3) at 12 and 48Â hours post-infection through RNA-seq

description: Additional file 8. Description of all genes in the livers of ducklings at 48Â hpi. Structure, expression level, difference information, and annotation information for all genes at 48Â hpi are described.
DOI: 10.6084/m9.figshare.6628040.v1
title: MOESM8 of Comparative liver transcriptome analysis in ducklings infected with duck hepatitis A virus 3 (DHAV-3) at 12 and 48Â hours post-infection through RNA-seq

description: Additional file 8. Description of all genes in the livers of ducklings at 48Â hpi. Structure, expression level, difference information, and annotation information for all genes at 48Â hpi are described.
DOI: 10.6084/m9.figshare.11870814
title: Additional file 16 of Single-nucleus RNA-seq identifies Huntington disease astrocyte states

description: Additional file 16. Differential gene expression between control and HD neuronal nuclei, GO term enriched in top differentially upregulated and downregualted genes.
DOI: 10.6084/m9.figshare.6627932
title: MOESM10 of Comparative liver transcriptome analysis in ducklings infected with duck hepatitis A virus 3 (DHAV-3) at 12 and 48Â hours post-infection through RNA-seq

description: Additional file 10. GO annotation information of genes in the livers of ducklings at 48Â hpi.
DOI: 10.6084/m9.figshare.6627932.v1
title: MOESM10 of Comparative liver transcriptome analysis in ducklings infected with duck hepatitis A virus 3 (DHAV-3) at 12 and 48Â hours post-infection through RNA-seq

description: Additional file 10. GO annotation information of genes in the livers of ducklings at 48Â hpi.
DOI: 10.6084/m9.figshare.7676471.v1
title: Catalytic Cracking of Soybean Oil for Biofuel over γ-Al2O3/CaO Composite Catalyst

description: In this paper, we report the catalytic cracking of soybean oil for biofuel over γ-Al2O3/CaO composite catalysts. The influence of catalysts, cracking temperature and weight hourly space velocity (WHSV) on the products distribution were investigated. The maximum yield (70.0 wt.%) of biofuel with low acid value (6.7 mg KOH g-1) and oxygen content (5.6%), as well as high calorific value (44.2 MJ kg-1) was achieved over 35 wt.% γ-Al2O3/CaO at 480 ºC and 3.72 h-1. The paper focused on the variation of biofuel composition and cracking pathway caused by γ-Al2O3/CaO composite catalysts via gas chromatography-mass spectrometry (GC-MS) and thermogravimetric (TG) analysis. Calcium oxide would react with fatty acid to yield calcium carboxylates at 300-350 ºC, which were subsequently decomposed into hydrocarbons (57.9 wt.%) and ketones (22.6 wt.%) at 415-510 ºC. As for 35 wt.% γ-Al2O3/CaO, the addition of γ-Al2O3 was beneficial to generate alkenes (38.2 wt.%), arenes (10.6 wt.%) and alcohols (12.3 wt.%) with ketones decreasing (16.5 wt.%) via γ-hydrogen transfer reaction and disproportination.