cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4757044
title: Identifying high risk pathways and species to prevent biological invasions in South Africa

description: Data were extracted from alien species databases on alien species in South Africa, on their pathways and dates of introduction, their regions of origin, South African distribution and invasion status. These data were used to assess the information content of South African alien species databases and to assess the introduction pathways of alien species in South Africa. The stowaway pathway for alien species was then assessed in more detail, and the role that shipping plays in the introduction of stowaway organisms to South Africa was evaluated. Finally, a simple, rapid and inexpensive method for developing invasive species watch lists was created and was tested using South Africa as a case study.
description: PhD thesis and publication
DOI: 10.5281/zenodo.4757043
title: Identifying high risk pathways and species to prevent biological invasions in South Africa

description: Data were extracted from alien species databases on alien species in South Africa, on their pathways and dates of introduction, their regions of origin, South African distribution and invasion status. These data were used to assess the information content of South African alien species databases and to assess the introduction pathways of alien species in South Africa. The stowaway pathway for alien species was then assessed in more detail, and the role that shipping plays in the introduction of stowaway organisms to South Africa was evaluated. Finally, a simple, rapid and inexpensive method for developing invasive species watch lists was created and was tested using South Africa as a case study.
description: PhD thesis and publication
DOI: 10.5281/zenodo.4757038
title: Integrating ecosystem services into conservation planning in South Africa

description: This thesis contains seven chapters that deals with the intergration of ecosystem services into conservation planning in South Africa. It starts with a review on the inclusion of ecosystem services in conservation plans, through the mapping of key ecosystem services in South Africa, to the tradeoffs and cost of safeguarding ecosystem services and biodiversity in some parts of South Africa.
description: Thesis submitted in partial fulfilment for the degree Doctor of Philosophy at Stellenbosch University. The data was created as one of five important ecosystem services mapped as part of a PhD research project at Stellenbosch University.
DOI: 10.5281/zenodo.4757037
title: Integrating ecosystem services into conservation planning in South Africa

description: This thesis contains seven chapters that deals with the intergration of ecosystem services into conservation planning in South Africa. It starts with a review on the inclusion of ecosystem services in conservation plans, through the mapping of key ecosystem services in South Africa, to the tradeoffs and cost of safeguarding ecosystem services and biodiversity in some parts of South Africa.
description: Thesis submitted in partial fulfilment for the degree Doctor of Philosophy at Stellenbosch University. The data was created as one of five important ecosystem services mapped as part of a PhD research project at Stellenbosch University.
DOI: 10.6084/m9.figshare.14588403
title: Model outputs

description: This set of data provides model outputs of one-dimensional ocean model simulations associated with the study "Substantial Sea Surface Temperature cooling in the Banda Sea associated with the Madden-Julian Oscillation in the boreal winter of 2015".
DOI: 10.6084/m9.figshare.14588403.v1
title: Model outputs

description: This set of data provides model outputs of one-dimensional ocean model simulations associated with the study "Substantial Sea Surface Temperature cooling in the Banda Sea associated with the Madden-Julian Oscillation in the boreal winter of 2015".
DOI: 10.5281/zenodo.4754517
title: Trace Gas and Meteorological Fields from WRF-LES

description: This dataset was generated for "A Statistical Evaluation of WRF-LES Trace Gas Dispersion Using Project Prairie Grass Measurements" (MWR). It contains 10-minute averaged trace gas and meteorological fields from six WRF-LES simulations as well as the namelists used to generate the meteorological fields. Three of these simulations have strong surface heating and weak geostrophic winds ("SCBL"). The other three look at weak heating and strong geostrophic winds ("WCBL"). Three different resolutions are also examined for each set of forcing: coarse, moderate, and fine. These simulations all contain an emission source at the lowest grid cells, whereas the "_elev" simulations contain emissions a few grid cells aloft. Version 1 of this dataset has fields that were generated with a roughness length of 0.1 m whereas Version 2 fields were generated with a roughness length of 0.008 m. Version 2 fields were used in the final version of the manuscript.
DOI: 10.5281/zenodo.3909880
title: Trace Gas and Meteorological Fields from WRF-LES

description: This dataset was generated for "A Statistical Evaluation of WRF-LES Trace Gas Dispersion Using Project Prairie Grass Measurements" (MWR). It contains 10-minute averaged trace gas and meteorological fields from six WRF-LES simulations as well as the namelists used to generate the meteorological fields. Three of these simulations have strong surface heating and weak geostrophic winds ("SCBL"). The other three look at weak heating and strong geostrophic winds ("WCBL"). Three different resolutions are also examined for each set of forcing: coarse, moderate, and fine. These simulations all contain an emission source at the lowest grid cells, whereas the "_elev" simulations contain emissions a few grid cells aloft. Version 1 of this dataset has fields that were generated with a roughness length of 0.1 m whereas Version 2 fields were generated with a roughness length of 0.008 m. Version 2 fields were used in the final version of the manuscript.
DOI: 10.15468/dytkk5
title: A New Species Of Notoperla (Plecoptera: Gripopterygidae) From Chile

description: This dataset contains the digitized treatments in Plazi based on the original journal article McLellan, Ian, Mercado, Maritza, Elliott, Simon (2005): A New Species Of Notoperla (Plecoptera: Gripopterygidae) From Chile. Illiesia 1 (5): 33-39, DOI: http://doi.org/10.5281/zenodo.4754475
DOI: 10.6084/m9.figshare.14588469
title: lorenz_216_1500_10_200_gaussian_s0.npz

description: Synthetic data for Variational Joint Filtering
DOI: 10.15468/rhex9d
title: Neoperla Of Unusual Size From Vietnam (Plecoptera: Perlidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Stark, Bill P., Sivec, Ignac (2011): Neoperla Of Unusual Size From Vietnam (Plecoptera: Perlidae). Illiesia 7 (28): 302-304, DOI: http://doi.org/10.5281/zenodo.4753223
DOI: 10.6084/m9.figshare.14089017.v1
title: Mouse models for hereditary spastic paraplegia uncover a role of PI4K2A in autophagic lysosome reformation

description: Hereditary spastic paraplegia (HSP) denotes genetically heterogeneous disorders (SPGs) characterized by leg spasticity due to degeneration of corticospinal axons. SPG11 and SPG15 have a similar clinical course and together are the most prevalent autosomal recessive HSP entity. The respective proteins play a role for macroautophagy/autophagy and autophagic lysosome reformation (ALR). Here, we report that <i>spg11</i> and <i>zfyve26</i> KO mice developed motor impairments within the same course of time. This correlated with enhanced accumulation of autofluorescent material in neurons and progressive neuron loss. In agreement with defective ALR, tubulation events were diminished in starved KO mouse embryonic fibroblasts (MEFs) and lysosomes decreased in neurons of KO brain sections. Confirming that both proteins act in the same molecular pathway, the pathologies were not aggravated upon simultaneous disruption of both. We further show that PI4K2A (phosphatidylinositol 4-kinase type 2 alpha), which phosphorylates phosphatidylinositol to phosphatidylinositol-4-phosphate (PtdIns4P), accumulated in autofluorescent deposits isolated from KO but not WT brains. Elevated PI4K2A abundance was already found at autolysosomes of neurons of presymptomatic KO mice. Immunolabelings further suggested higher levels of PtdIns4P at LAMP1-positive structures in starved KO MEFs. An increased association with LAMP1-positive structures was also observed for clathrin and DNM2/dynamin 2, which are important effectors of ALR recruited by phospholipids. Because PI4K2A overexpression impaired ALR in control cells, while its knockdown increased tubulation, we conclude that PI4K2A modulates phosphoinositide levels at autolysosomes and thus the recruitment of downstream effectors of ALR. Therefore, PI4K2A may play an important role in the pathogenesis of SPG11 and SPG15.
DOI: 10.5281/zenodo.4757149
title: Times to exhaustion from recreational fishing data

description: Data from Casselberry et al. In Review on times to exhaustion for recreationally angled fish species
DOI: 10.5281/zenodo.4757148
title: Times to exhaustion from recreational fishing data

description: Data from Casselberry et al. In Review on times to exhaustion for recreationally angled fish species
DOI: 10.5281/zenodo.4757139
title: Example DWI data acquired on a Philips scanner

description: Example DWI data acquired on a Philips scanner
DOI: 10.5281/zenodo.4757138
title: Example DWI data acquired on a Philips scanner

description: Example DWI data acquired on a Philips scanner
DOI: 10.6084/m9.figshare.12814949
title: A pilot of the feasibility and usefulness of an aged obese model for use in stroke research

description: Twelve month old Wistar-Han rats (n=15) were fed a 60% fat diet for 8 months and serial blood samples were taken to assess the development of metabolic syndrome and pro-inflammatory markers. Following this, to pilot the suitability of these rats for undergoing surgical models of stroke, they underwent 30min of middle cerebral artery occlusion (MCAO) alongside younger controls fed a standard diet (n=10). Survival, weight and functional outcome were monitored and blood vessels and tissues collected for analysis. <br>Attached data is body weight over 8 months (g), random glucose (mmol), fasted glucose (mmol), metabolic markers (C-peptide (ug/ml) Insulin (ug/ml), Leptin (mean flourescent intensity), inflammatory markers and cytokines (pg/ml) over 8 months on the high fat diet. Blood pressure (mmHg), arterial wall thickness (um), liver vacuole density (number of vacuoles / mm2), body weight change after MCAO (%), infarct volume (mm3). For methods details see linked manuscript. <br>Statistical analysis files (graphpad prism v8, named based of figures) are also included so analysis can be repeated.
DOI: 10.6084/m9.figshare.12814949.v2
title: A pilot of the feasibility and usefulness of an aged obese model for use in stroke research

description: Twelve month old Wistar-Han rats (n=15) were fed a 60% fat diet for 8 months and serial blood samples were taken to assess the development of metabolic syndrome and pro-inflammatory markers. Following this, to pilot the suitability of these rats for undergoing surgical models of stroke, they underwent 30min of middle cerebral artery occlusion (MCAO) alongside younger controls fed a standard diet (n=10). Survival, weight and functional outcome were monitored and blood vessels and tissues collected for analysis. <br>Attached data is body weight over 8 months (g), random glucose (mmol), fasted glucose (mmol), metabolic markers (C-peptide (ug/ml) Insulin (ug/ml), Leptin (mean flourescent intensity), inflammatory markers and cytokines (pg/ml) over 8 months on the high fat diet. Blood pressure (mmHg), arterial wall thickness (um), liver vacuole density (number of vacuoles / mm2), body weight change after MCAO (%), infarct volume (mm3). For methods details see linked manuscript. <br>Statistical analysis files (graphpad prism v8, named based of figures) are also included so analysis can be repeated.
DOI: 10.6084/m9.figshare.12814949.v1
title: Raw data.xlsx

description: Twelve month old Wistar-Han rats (n=15) were fed a 60% fat diet for 8 months and serial blood samples were taken to assess the development of metabolic syndrome and pro-inflammatory markers. Following this, to pilot the suitability of these rats for undergoing surgical models of stroke, they underwent 30min of middle cerebral artery occlusion (MCAO) alongside younger controls fed a standard diet (n=10). Survival, weight and functional outcome were monitored and blood vessels and tissues collected for analysis. <br>Attached data is body weight over 8 months, random glucose, fasted glucose, metabolic markers (C-peptide, Insulin, Leptin), inflammatory markers and cytokines over 8 months on the high fat diet. Blood pressure, arterial wall thickness, liver vacuole size, body weight after MCAO, infarct volume. For methods details see linked manuscript.
DOI: 10.15468/c4g6ax
title: A new species of Pandaridae (Copepoda), from the whale shark Rhincodon typus (Smith)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Norman, B. M., Newbound, D. R., Knott, B. (2000): A new species of Pandaridae (Copepoda), from the whale shark Rhincodon typus (Smith). Journal of Natural History 34 (3): 355-366, DOI: 10.1080/002229300299534, URL: http://www.tandfonline.com/doi/abs/10.1080/002229300299534
DOI: 10.6084/m9.figshare.14265644
title: Proxy data Columbine Lake

description: Proxy dataset for Columbine Lake, Colorado. Dataset contains grainsize, bulk density, magnetic susceptibility, XRF, and hyperspectral indices of chlorophyll and chlorite.
DOI: 10.6084/m9.figshare.14417999
title: Columbine Lake LiPD and Bacon files

description: LiPD file and Bacon file for Columbine Lake Colorado. LiPD file contains data necessary to run the code to replicate the results. Bacon file is necessary to get the BACON and PLUM version of the age model.
DOI: 10.6084/m9.figshare.14251400
title: Columbine Lake varve measurements from observer 1, 2, and 3

description: Varve delineation and quality measurements from observers 1, 2, and 3 for Columbine Lake, CO. Zip file contains measurement files from two cores (COL17-2 and COL17-3). Each subfolder contains three files per slide (.dbf, .shp, .shx). Each slide name contains the depth (e.g. 0-7 cm). The files can be opened with ArcGIS or in R.
DOI: 10.6084/m9.figshare.14265644.v1
title: Proxy data Columbine Lake

description: Proxy dataset for Columbine Lake, Colorado. Dataset contains grainsize, bulk density, magnetic susceptibility, XRF, and hyperspectral indices of chlorophyll and chlorite.
DOI: 10.6084/m9.figshare.13134843
title: Effect of laser irradiation on the adhesion of resin-based materials to zirconia: a systematic review and meta-analysis

description: This systematic review and meta-analysis were made to evaluate the bond strength behavior and failure mode of zirconia surfaces treated by laser irradiation and to highlight the main characteristics and parameters of each laser system. The PubMed, the Scopus, and the Web of Science databases were searched for articles without limit on year of publication, in accordance with the PRISMA guidelines. Forty-three <i>in vitro</i> studies were included and meta-analyses were performed to compare the bond strength values found after the use of lasers, and to quantify the percentage of failures. When compared to untreated groups, the bond strength values found for the lasers ranged from 1.4 to 30.16 MPa for CO<sub>2</sub>; 1.18 to 40.33 MPa for Nd:YAG; 0 to 22.72 MPa for Er:YAG; and 0.5 to 34.92 MPa for Er,Cr:YSGG. Statistical analysis indicated high heterogeneity in-between the comparisons of different lasers (<i>p</i> ˂ 0.05). When compared to other treatments, the results of the meta-analysis were favorable for tribochemical silica coating (TSC) and airborne-particle abrasion (APA) (<i>p</i> ˂ 0.05), except for the CO<sub>2</sub> laser. Adhesive failures were predominant (68.28% for CO<sub>2;</sub> 65.23% for Nd:YAG; 76% for Er:YAG and 71.91% for Er,Cr:YSGG laser), followed by mixed and cohesive failures. Based on the results of this study, the conditioning of zirconia surfaces through laser irradiation increases the bond strength values when compared to untreated surfaces, regardless of the type of laser used. However, except for CO<sub>2</sub> laser, TSC and APA still show superior bond strength results.
DOI: 10.6084/m9.figshare.13134843.v1
title: Effect of laser irradiation on the adhesion of resin-based materials to zirconia: a systematic review and meta-analysis

description: This systematic review and meta-analysis were made to evaluate the bond strength behavior and failure mode of zirconia surfaces treated by laser irradiation and to highlight the main characteristics and parameters of each laser system. The PubMed, the Scopus, and the Web of Science databases were searched for articles without limit on year of publication, in accordance with the PRISMA guidelines. Forty-three <i>in vitro</i> studies were included and meta-analyses were performed to compare the bond strength values found after the use of lasers, and to quantify the percentage of failures. When compared to untreated groups, the bond strength values found for the lasers ranged from 1.4 to 30.16 MPa for CO<sub>2</sub>; 1.18 to 40.33 MPa for Nd:YAG; 0 to 22.72 MPa for Er:YAG; and 0.5 to 34.92 MPa for Er,Cr:YSGG. Statistical analysis indicated high heterogeneity in-between the comparisons of different lasers (<i>p</i> ˂ 0.05). When compared to other treatments, the results of the meta-analysis were favorable for tribochemical silica coating (TSC) and airborne-particle abrasion (APA) (<i>p</i> ˂ 0.05), except for the CO<sub>2</sub> laser. Adhesive failures were predominant (68.28% for CO<sub>2;</sub> 65.23% for Nd:YAG; 76% for Er:YAG and 71.91% for Er,Cr:YSGG laser), followed by mixed and cohesive failures. Based on the results of this study, the conditioning of zirconia surfaces through laser irradiation increases the bond strength values when compared to untreated surfaces, regardless of the type of laser used. However, except for CO<sub>2</sub> laser, TSC and APA still show superior bond strength results.
DOI: 10.5286/isis.e.rb2000223
title: Disordered Materials Express Proposal: Reavealing the Pi interaction between olefin and methanol

description: This proposal aims to investigate the nature of the weak interaction between carbon - carbon double bonds and polar solvents.Data on linear and cyclic alkenes in methanol have already been acquired and analysed via EPSR simulations, these however don't show the interaction we are looking for and seem to be strongly dipendent on the parameters used, such as Lennard - Jones potentials and partial charges.We are asking then to acquire data to study a simpler and rigid alkene, tetramethyl ethylene, in methanol, hoping that the rigidity and the high symmetry would work as a contraint for the simulations revealing whether or not the Pi interaction is present.
DOI: 10.5286/isis.e.rb2000223-1
title: Disordered Materials Express Proposal: Reavealing the Pi interaction between olefin and methanol

description: This proposal aims to investigate the nature of the weak interaction between carbon - carbon double bonds and polar solvents.Data on linear and cyclic alkenes in methanol have already been acquired and analysed via EPSR simulations, these however don't show the interaction we are looking for and seem to be strongly dipendent on the parameters used, such as Lennard - Jones potentials and partial charges.We are asking then to acquire data to study a simpler and rigid alkene, tetramethyl ethylene, in methanol, hoping that the rigidity and the high symmetry would work as a contraint for the simulations revealing whether or not the Pi interaction is present.
DOI: 10.5286/isis.e.rb2000236
title: Disordered Materials Express - Crown Ether/Nanotubide Solution Structure

description: Nanomaterials have long attracted attention for next generation energy devices, notably for quickly charging/discharging supercapacitors. Carbon nanotubes have long been seen as promising candidates owing to their high conductivity, low density, large surface area, and rapid ion conductivity. Here, we are looking at how nanotubes act as a supercapacitor by studying how ions move in solution when near charged nanotubes (akin to a charged supercapaictor). This work involves collaboration with the NIST-CNR facility in the USA, where we will be wrapping the ions in molecules called 'crown ethers' which we can monitor to measure the motion of the ions using a technique called QENS. However, to interpret these results we will need to understand what the crown ether system looks like using neutron scattering, which we will perform on the NIMROD instrument.
DOI: 10.5286/isis.e.rb2000236-1
title: Disordered Materials Express - Crown Ether/Nanotubide Solution Structure

description: Nanomaterials have long attracted attention for next generation energy devices, notably for quickly charging/discharging supercapacitors. Carbon nanotubes have long been seen as promising candidates owing to their high conductivity, low density, large surface area, and rapid ion conductivity. Here, we are looking at how nanotubes act as a supercapacitor by studying how ions move in solution when near charged nanotubes (akin to a charged supercapaictor). This work involves collaboration with the NIST-CNR facility in the USA, where we will be wrapping the ions in molecules called 'crown ethers' which we can monitor to measure the motion of the ions using a technique called QENS. However, to interpret these results we will need to understand what the crown ether system looks like using neutron scattering, which we will perform on the NIMROD instrument.
DOI: 10.15468/d9uj4z
title: Michigan Plecoptera (Stoneflies): Distribution Patterns And An Updated Species List

description: This dataset contains the digitized treatments in Plazi based on the original journal article Grubbs, Scott A., Pessino, Massimo, DeWalt, R. Edward (2012): Michigan Plecoptera (Stoneflies): Distribution Patterns And An Updated Species List. Illiesia 8 (18): 162-173, DOI: http://doi.org/10.5281/zenodo.4753235
DOI: 10.5281/zenodo.4757153
title: Replication Archive for "Impacts of COVID-19 on the Self-employed"

description: This archive includes data and STATA code to replicate all results in the referenced paper.
DOI: 10.5281/zenodo.4757152
title: Replication Archive for "Impacts of COVID-19 on the Self-employed"

description: This archive includes data and STATA code to replicate all results in the referenced paper.
DOI: 10.5517/ccdc.csd.cc26npf0
title: CCDC 2045672: Experimental Crystal Structure Determination

description: Related Article: Jixin Wang, Da Ba, Mengqi Yang, Guolin Cheng, Lianhui Wang|2021|J.Org.Chem.|86|6423|doi:10.1021/acs.joc.1c00275
DOI: 10.5517/ccdc.csd.cc1npcb1
title: CCDC 1539873: Experimental Crystal Structure Determination

description: Related Article: Ezhumalai David, Alessia Colombo, Claudia Dragonetti, Nallasamy Palanisami|2021|Chem.-Eur.J.|27|7124|doi:10.1002/chem.202005059
DOI: 10.5517/ccdc.csd.cc1pfdh0
title: CCDC 1562012: Experimental Crystal Structure Determination

description: Related Article: Ezhumalai David, Alessia Colombo, Claudia Dragonetti, Nallasamy Palanisami|2021|Chem.-Eur.J.|27|7124|doi:10.1002/chem.202005059
DOI: 10.6084/m9.figshare.14588679
title: Modeling the Price of Crude Oil in Nigeria: Identification of a reliable model for application

description: Crude oil price data<br>
DOI: 10.5281/zenodo.4756919
title: Mapping the Pacific slab edge and toroidal mantle flow beneath Kamchatka

description: The model of the Pacific slab edge and toroidal mantle flow beneath Kamchatka
DOI: 10.5281/zenodo.4755925
title: Mapping the Pacific slab edge and toroidal mantle flow beneath Kamchatka

description: The model of the Pacific slab edge and toroidal mantle flow beneath Kamchatka
DOI: 10.5281/zenodo.4757263
title: Linked Ogham Ontology

description: Linked Ogham Ontology @ http://ontology.ogham.link
DOI: 10.15468/efy73n
title: ga-2009

description: test-2009