cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10404433
title: UA - Gaussian Depth Disc (GDD dataset)
title: Deep Learning for Single-Shot Structured Light Profilometry: A Comprehensive Dataset and Performance Analysis

description: Dear reader,


Welcome! You must be an avid profilometry person to be interested in downloading our dataset.

Before you start tinkering with the dataset package please do install the requirements.txt libraries for a more easy step into operating this system.

We hope to have made the hierarchy of the package as clear as possible! Also note that this system was written in VScode.

The Matlab script that creates the surface has been included for if you yourself would like to print one out and do in depth research!

Find your way to the examples folder, there you can find "entire_dataset". This folder contains a script to divide the original h5 file (480x640) containing all data

into whatever sub-options you'd like (had to be made int16 as to not exceed to 50GB limit of Zenodo, you are more than welcome to reach out for the 32int format!). We included a downsampled format of 120x160 (int32) as this makes the file size more managable for pc's with not enough RAM. An example divided dataset has already been given namely the 80/20 division of respectively training and validation data in the "example_dataset" folder, of the downsampled dataset.

In the folder models you will find the two models mentioned in the publication related to this dataset. These two were published with the dataset since they

had either the highest performance on the training and validation dataset (DenseNet) or on the random physical object test (CNN).

A training script is included (training_script.py) to show you how these models were created, so if you wish to add new models to the networks.py file in the classes folder, you can!

The validation jupyter notebook contains two visualisation tools to quickly and neatly show the performance of your model on the recorded dataset.

Lastly to test on the recorded objects you can run the "test_physical_data.py" and "test_physical_data_sine_deivation.py" scripts.


We hope this helps you in your research and we hope it further improves any and all research within the single shot profilometry field! 😊


Kind regards,


Rhys Evans,

InViLab,

University of Antwerp, Belgium
DOI: 10.5281/zenodo.10404434
title: UA - Gaussian Depth Disc (GDD dataset)
title: Deep Learning for Single-Shot Structured Light Profilometry: A Comprehensive Dataset and Performance Analysis

description: Dear reader,


Welcome! You must be an avid profilometry person to be interested in downloading our dataset.

Before you start tinkering with the dataset package please do install the requirements.txt libraries for a more easy step into operating this system.

We hope to have made the hierarchy of the package as clear as possible! Also note that this system was written in VScode.

Find your way to the examples folder, there you can find "entire_dataset". This folder contains a script to divide the original h5 file containing all data

into whatever sub-options you'd like. An example divided dataset has already been given namely the 80/20 division of respectively training and validation

data in the "example_dataset" folder.

In the folder models you will find the two models mentioned in the publication related to this dataset. These two were published with the dataset since they

had either the highest performance on the training and validation dataset (DenseNet) or on the random physical object test (UNet).

A training script is included (training_script.py) to show you how these models were created, so if you wish to add new models to the networks.py file in the classes folder, you can!

The validation jupyter notebook contains two visualisation tools to quickly and neatly show the performance of your model on the recorded dataset.

Lastly to test on the recorded object you can run the "test_physical_data.py" script.


We hope this helps you in your research and we hope it further improves any and all research within the single shot profilometry field! 😊


Kind regards,


Rhys Evans,

InViLab,

University of Antwerp, Belgium
DOI: 10.5281/zenodo.12749481
title: MODES DATA - Hough functions and frequencies - 4 v3
DOI: 10.5281/zenodo.12749482
title: MODES DATA - Hough functions and frequencies - 4 v3
DOI: 10.6084/m9.figshare.26323912
title: Gene.ann.tpm.tsv

description: Gene annotation was primarily performed by using KofamKOALA. Unannotated genes would be aligned with Uniprot database by DIAMOND. OGs were determined by eggnog-mapper. Raw reads were first tirmmed by Trimmomatic for poor-quality base and then filtered by Ribodetectorfor remove rRNA reads. The unaligned mRNA reads were mapped to the representative MAGs by BBmap . Finally, featureCounts was used to count the read number of each gene.
DOI: 10.6084/m9.figshare.26323912.v1
title: Gene.ann.tpm.tsv

description: Gene annotation was primarily performed by using KofamKOALA. Unannotated genes would be aligned with Uniprot database by DIAMOND. OGs were determined by eggnog-mapper. Raw reads were first tirmmed by Trimmomatic for poor-quality base and then filtered by Ribodetectorfor remove rRNA reads. The unaligned mRNA reads were mapped to the representative MAGs by BBmap . Finally, featureCounts was used to count the read number of each gene.
DOI: 10.57766/ipen/kqftiu
title: Dados gerais 2021-2022 - Projeto Temático FAPESP - Pesquisadora responsável: Dra. Linda V. E. Caldas (Processo-18/05982-0)

description: Dados da pesquisa produzidos em 2021 e 2022.
DOI: 10.15468/dl.w475z3
title: Occurrence Download

description: A dataset containing 431 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Aporia crataegi (Linnaeus, 1758)"
 ]
}

 The dataset includes 431 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028916-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q2hvgz
title: Occurrence Download

description: A dataset containing 74070 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Bangladesh, Bhutan, India, Nepal, Pakistan, Sri Lanka)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (EX, EW, CR, EN, VU, NT, LC, DD, NE)",
 "TaxonKey is Odonata"
 ]
}

 The dataset includes 74070 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028914-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zvh9ns
title: Occurrence Download

description: A dataset containing 20931743 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Chinese Taipei"
 ]
}

 The dataset includes 20931743 records from 1636 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028883-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4rmpqc
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Catasetum ricii R.Vásquez & Dodson"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127410-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6bsray
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Catasetum rionegrense Campacci & G.F.Carr"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127417-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nuv8xt
title: Occurrence Download

description: A dataset containing 758171 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2022-06-19",
 "EventDate is less than or equal to 2022-07-19",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 758171 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0422440-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vvhjde
title: Occurrence Download

description: A dataset containing 73793 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is AUS.10_1",
 {
 "or" : [
 "TaxonKey is Rytidosperma tenuius (Steud.) O.E.Erikss., A.Hansen & Sunding",
 "TaxonKey is Rytidosperma setaceum (R.Br.) Connor & Edgar",
 "TaxonKey is Rytidosperma racemosum (R.Br.) Connor & Edgar",
 "TaxonKey is Rytidosperma pilosum (R.Br.) Connor & Edgar",
 "TaxonKey is Rytidosperma penicillatum (Labill.) Connor & Edgar",
 "TaxonKey is Rytidosperma pallidum (R.Br.) A.M.Humphreys & H.P.Linder",
 "TaxonKey is Rytidosperma longifolium (R.Br.) Connor & Edgar",
 "TaxonKey is Rytidosperma laeve (Vickery) Connor & Edgar",
 "TaxonKey is Rytidosperma geniculatum (J.M.Black) Connor & Edgar",
 "TaxonKey is Rytidosperma fulvum (Vickery) A.M.Humphreys & H.P.Linder",
 "TaxonKey is Rytidosperma erianthum (Lindl.) Connor & Edgar",
 "TaxonKey is Rytidosperma duttonianum (Cashmore) Connor & Edgar",
 "TaxonKey is Rytidosperma carphoides (F.Muell. ex Benth.) Connor & Edgar",
 "TaxonKey is Rytidosperma caespitosum (Gaudich.) Connor & Edgar",
 "TaxonKey is Rytidosperma bipartitum (Link) A.M.Humphreys & H.P.Linder",
 "TaxonKey is Rytidosperma auriculatum (J.M.Black) Connor & Edgar",
 "TaxonKey is Rutidosis leptorrhynchoides F.Muell.",
 "TaxonKey is Rumex tenax Rech.fil.",
 "TaxonKey is Rumex dumosus A.Cunn. ex Meisn.",
 "TaxonKey is Rumex brownii Schltdl.",
 "TaxonKey is Rumex bidens R.Br.",
 "TaxonKey is Rubus parvifolius L.",
 "TaxonKey is Rorippa laciniata (F.Muell.) L.A.Johnst.",
 "TaxonKey is Roepera glauca (F.Muell.) Beier & Thulin",
 "TaxonKey is Roepera crenata (F.Muell.) Beier & Thulin",
 "TaxonKey is Roepera apiculata (F.Muell.) Beier & Thulin",
 "TaxonKey is Rhodanthe pygmaea (DC.) Paul G.Wilson",
 "TaxonKey is Rhodanthe floribunda (DC.) Paul G.Wilson",
 "TaxonKey is Rhodanthe corymbiflora (Schltdl.) Paul G.Wilson",
 "TaxonKey is Rhodanthe anthemoides (Spreng.) Paul G.Wilson",
 "TaxonKey is Rhagodia spinescens R.Br.",
 "TaxonKey is Rhagodia parabolica R.Br.",
 "TaxonKey is Ranunculus sessiliflorus R.Br. ex DC.",
 "TaxonKey is Ranunculus robertsonii Benth.",
 "TaxonKey is Ranunculus pumilio R.Br. ex DC.",
 "TaxonKey is Ranunculus pentandrus var. platycarpus (F.Muell.) H.Eichler",
 "TaxonKey is Ranunculus lappaceus Sm.",
 "TaxonKey is Ranunculus inundatus R.Br. ex DC.",
 "TaxonKey is Ranunculus diminutus B.G.Briggs"
 ]
 }
 ]
}

 The dataset includes 73793 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0277989-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y8pq93
title: Occurrence Download

description: A dataset containing 805 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Micrurus mipartitus (Duméril, Bibron & Duméril, 1854)"
 ]
}

 The dataset includes 805 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127421-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p26y8u
title: Occurrence Download

description: A dataset listing the 20574 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence)",
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Chordata"
 ]
}

 The dataset's 20574 records were derived from 1014 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0427493-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uwmskq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Catasetum schweinfurthii D.E.Benn. & Christenson"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127447-230224095556074/datasets/export for details.
DOI: 10.15468/dl.dv8pq5
title: Occurrence Download

description: A dataset containing 10692 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is TOPP Summary of SSM-derived Telemetry"
 ]
}

 The dataset includes 10692 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127508-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hww45j
title: Occurrence Download

description: A dataset containing 332 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chironius monticola Roze, 1952"
 ]
}

 The dataset includes 332 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0279075-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5nt3bn
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maracaiba meridensis (Miralles, Rivas & Schargel, 2005)"
 ]
}

 The dataset includes 24 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0274538-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gnrtja
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Scratching the surface? Taxonomic revision of the subgenus Schizoptera (Odontorhagus) reveals vast undocumented biodiversity in the largest litter bug genus Schizoptera Fieber (Hemiptera: Dipsocoromorpha)"
 ]
}

 The dataset includes 94 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127408-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k8e6cu
title: Occurrence Download

description: A dataset containing 237066 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Alopecurus geniculatus L."
 ]
}

 The dataset includes 237066 records from 871 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036136-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2f4wk1
title: CCDC 2239023: Experimental Crystal Structure Determination

description: Related Article: Dumitru Stati, Jan van Leusen, Victor Ch. Kravtsov, Yurii Chumakov, Paul Kögerler, Svetlana G. Baca|2025|RSC Advances|15|18209|doi:10.1039/D5RA02513C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ksdtl
title: CCDC 2376950: Experimental Crystal Structure Determination

description: Related Article: Xin Zhou, Guangyao Liu, Meifang Yang, Mengyu Li, Xiaodi Yang, Weiliang Gu, Yitian Zhao, Houchao Tao|2025|Chin.Chem.Lett.|36|110734|doi:10.1016/j.cclet.2024.110734
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ksdxp
title: CCDC 2376953: Experimental Crystal Structure Determination

description: Related Article: Xin Zhou, Guangyao Liu, Meifang Yang, Mengyu Li, Xiaodi Yang, Weiliang Gu, Yitian Zhao, Houchao Tao|2025|Chin.Chem.Lett.|36|110734|doi:10.1016/j.cclet.2024.110734
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.6kgfjp
title: Occurrence Download

description: A dataset containing 10805 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Rattus rattus (Linnaeus, 1758)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 10805 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034309-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u6fsvw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hemisus guineensis Cope, 1865",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.6372 -28.0032,16.2782 -28.5786,20.509 -28.5786,20.509 -24.0715,15.4933 -24.0715,15.4945 -24.1257,16.0509 -25.6631,15.6372 -28.0032))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034310-250525065834625/datasets/export for details.
DOI: 10.15468/dl.2q3g3t
title: Occurrence Download

description: A dataset containing 468 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aedes vittatus (Bigot, 1861)"
 ]
}

 The dataset includes 468 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196719-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ht2cpz
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((35.32496433333334 65.07073733333334, 69.37031999999999 65.07073733333334, 69.37031999999999 82.15736799999999, 35.32496433333334 82.15736799999999, 35.32496433333334 65.07073733333334))",
 "EventDate is 2014-11-01,2014-11-30"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060529-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tl52ce
title: Occurrence Download

description: A dataset containing 986 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macadamia tetraphylla L.A.S.Johnson",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 986 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051193-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.admztb
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eupsophus contulmoensis Ortiz, Ibarra-Vidal & Formas, 1989"
 ]
}

 The dataset includes 42 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0271054-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qs0u2z
title: Occurrence Download

description: A dataset containing 1776 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macaranga tanarius (L.) Müll.Arg.",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 1776 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051195-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uve8x6
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Hebius clerki (Wall, 1925)"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076373-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.enzuhy
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cremosperma micropecten Fern.Alonso"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151312-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b5ps7v
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Charidotella annexa (Boheman, 1855)"
 ]
}

 The dataset includes 37 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0235713-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.