cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25523737.v1
title: Clinical Characteristics and Risk Factors for In-Hospital Mortality in Surgical Patients with Abdominal Sepsis: A Retrospective Multicenter Study

description: The dataset uploaded here is the raw data for this study, and these data can be further analyzed.The clinical dataset for this study was derived from two prominent healthcare institutions: the Chinese People's Liberation Army (PLA) General Hospital, which boasts 4,000 patient beds, and the PLA Air Force Medical Center, equipped with 1,500 patient beds. We undertook a retrospective analysis of the medical records of patients with abdominal sepsis who underwent surgical interventions in the operating room under general anesthesia between January 2008 and December 2022. Data collection was executed in a standardized fashion, adhering to stringent definitions to ascertain data integrity. The need for patient consent is waived due to the retrospective study design.
DOI: 10.6084/m9.figshare.3521210.v1
title: Appendix B. Examples of field margin types.

description: Examples of field margin types.
DOI: 10.6084/m9.figshare.6727856.v1
title: Exploratory investigation of intestinal function and bacterial translocation after focal cerebral ischemia in the mouse

description: This is the dataset used in publication "Exploratory investigation of intestinal function and bacterial translocation after focal cerebral ischemia in the mouse"<br>
DOI: 10.6084/m9.figshare.19131434.v1
title: Supplementary Material for: RP-18 TLC and Computational Descriptors of Skin Permeability of Sunscreens

description: Abstract The relationships between the reversed-phase thin layer chromatographic retention parameters obtained on octadecyl-modified silica (RP-18) sorbent for mobile phases containing water and one of six water-miscible organic modifiers (acetone, methanol, acetonitrile, tetrahydrofurane, N,N-dimethylformamide, 1,4-dioxane) and skin permeability coefficients were studied for a group of 21 cosmetic raw materials, mainly organic sunscreens and preservatives. The correlations between the skin permeability coefficients log Kd calculated in silico using EpiSuite software and the RP-18 thin layer chromatographic retention parameters are mostly linear, especially for compounds of lower-to-medium lipophilicity.. It was established that skin permeability coefficient models based on retention parameters collected for mobile phases containing acetone or dioxane (75% v/v), proposed for structurally unrelated cosmetic raw materials are also applicable to other actives, as shown using a test set of compounds whose in vivo log Kd data are available. Skin permeability models developed in this study have the benefit of being based on easily obtained, chromatographic descriptors and their applicability extends beyond cosmetic chemistry.
DOI: 10.6084/m9.figshare.27825582.v1
title: Characterization of the novel carbapenem-resistant Pseudomonas aeruginosa phage vB_PaeM_GZMU_A1002 and the synergistic antibacterial effect with Allicin

description: The increasing problem of bacterial resistance to antibiotics necessitates the exploration of innovative antimicrobial strategies. Phage therapy is a promising solution; however, naturally occurring phages targeting resistant pathogens are still limited. This study aimed to isolate and identify phages capable of lysing carbapenem-resistant Pseudomonas aeruginosa (CRPA) from sewage and to investigate the synergistic antimicrobial effects of phage therapy combined with allicin. A novel phage, vB_PaeM_GZMU_A1002, was successfully isolated and characterized, revealing a double-stranded DNA genome of 63,770 bp with no virulence or resistance genes, indicating its safety for application. This phage demonstrated good stability across various temperatures and pH levels, effectively inhibiting CRPA growth within 12 hours and achieving about 50% biofilm eradication rate. Notably, the combination of phage and allicin significantly enhanced antimicrobial efficacy, reducing the effective concentrations of both agents. The synergistic action was likely due to increased damage to bacterial cell membranes and reduced cell surface hydrophobicity. This research highlights the potential of phage therapy, particularly when combined with natural compounds like allicin, as a viable approach to combat antibiotic-resistant infections.
DOI: 10.6084/m9.figshare.5125735.v1
title: Supplementary Material for: Distinct Signaling Cascades of TREM-1, TLR and NLR in Neutrophils and Monocytic Cells

description: Triggering receptor expressed on myeloid cells 1 (TREM-1) is an important mediator of innate inflammatory responses in microbial infections and sepsis. TREM-1 ligation on neutrophils (PMN) or monocytes results in the production of proinflammatory cytokines. Engagement of TREM-1 induces the activation of MAP kinases as well as rapid Ca<sup>2+</sup> mobilization. However, a detailed understanding of TREM-1 signaling pathways is currently lacking. We evaluated the TREM-1 signaling hierarchy in monocytic cells and found that the acute myeloid leukemia cell line MUTZ-3 expresses TREM-1 in a natural and functional manner. We compared essential signaling molecules of the TREM-1, TLR and NLR cascade in MUTZ-3 cells as well as primary monocytes or PMN by Western blot analysis. These studies confirmed the essential role of phosphatidyl inositide 3-kinase (PI3K) and p38MAPK in the TREM-1 as well as the TLR or NLR cascade of monocytic cells. Importantly, PI3K and p38MAPK signals in monocytic cells both control Ca<sup>2+</sup> mobilization and are directly connected in the TREM-1 signaling hierarchy, which contrasts previous results obtained in PMN. Taken together, our results indicate cell type-specific differences in the TREM-1 signaling cascade and contribute to an enhanced understanding of the regulation of innate inflammatory responses.
DOI: 10.17632/ytd568rh3p
title: APCData cervical cytology cells

description: We present a Dataset of cervical cytology images developed in collaboration with the Anatomical Pathology and Cytology laboratory located in Rivera, Uruguay. The set includes 425 high-quality microscope field images, with cells labeled in 6 classes corresponding to the Bethesda System for reporting cervical cytology (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9168399/): NILM (Negative for Intraepithelial Lesion or Malignancy), ASC-US (Atypical Squamous Cells of Undetermined Significance), ASC-H (Atypical Squamous Cells, cannot exclude HSIL), LSIL (Low-grade Squamous Intraepithelial Lesion), HSIL (High-grade Squamous Intraepithelial Lesion), and SCC (Squamous Cell Carcinoma). The cells were labeled using bounding boxes and also points in nuclei.
DOI: 10.6084/m9.figshare.23579745.v1
title: Supplementary Material for: Quality Assessment of Ultrasound and Magnetic Resonance Imaging for Hepatocellular Carcinoma Surveillance: A Systematic Review and Meta-Analysis

description: <b><i>Introduction:</i></b> To achieve early detection and curative treatment options, surveillance imaging for hepatocellular carcinoma (HCC) must remain of quality and without substantial limitations in liver visualization. However, the prevalence of limited liver visualization during HCC surveillance imaging has not been systematically assessed. Utilizing a systematic review and meta-analytic approach, we aimed to determine the prevalence of limited liver visualization during HCC surveillance imaging. <b><i>Methods:</i></b> MEDLINE and Embase electronic databases were searched to identify published data on liver visualization limitations of HCC surveillance imaging. An analysis of proportions was pooled using a generalized linear mixed model with Clopper-Pearson intervals. Risk factors were analysed using a generalized mixed model with a logit link and inverse variance weightage. <b><i>Results:</i></b> Of 683 records, 10 studies (7,131 patients) met inclusion criteria. Seven studies provided data on liver visualization limitations on ultrasound (US) surveillance exams: prevalence of limited liver visualization was 48.9% (95% CI: 23.5–74.9%) in the overall analysis and 59.2% (95% CI: 24.2–86.9%) in a sensitivity analysis for cirrhotic patients. Meta-regression determined that non-alcoholic fatty liver disease was associated with limited liver visualization on US. Four studies provided data for liver visualization limitations in abbreviated magnetic resonance imaging (aMRI), with inadequate visualization ranging from 5.8% to 19.0%. One study provided data for complete MRI and none for computed tomography. <b><i>Conclusion:</i></b> A substantial proportion of US exams performed for HCC surveillance provide limited liver visualization, especially in cirrhosis, which may hinder detection of small observations. Alternative surveillance strategies including aMRI may be appropriate for patients with limited US visualization.
DOI: 10.6084/m9.figshare.3490226.v1
title: TotalRawSNPs.vcf.gz

description: Total raw SNP and INDel calls for Puritz, J.B., Gold, J.R., and Portnoy, D.S. Fine-scale partitioning of genomic variation among recruits in an exploited fishery: causes and consequences.
DOI: 10.6084/m9.figshare.11441016.v1
title: WB quantifications

description: These are all quantified western blots included in our Plos One manuscript.<br>
DOI: 10.6084/m9.figshare.13269293.v2
title: Supporting Information for the Article - Unaccounted Microplastics in Wastewater Sludge: Where Do They Go?

description: Supporting Information for the Article - Unaccounted Microplastics in Wastewater Sludge: Where Do They Go?
DOI: 10.6084/m9.figshare.28655309.v1
title: Supplementary data for the paper entitled "Characterization of shell field populations in gastropods and their autonomous specification mechanism independent of inter-quartet interactions"

description: Supplementary data for the paper entitled "Characterization of shell field populations in gastropods and their autonomous specification mechanism independent of inter-quartet interactions," published in Development (https://doi.org/10.1242/dev.204538). Trinity.okay.cds.fasta is the reference assembly sequences for single-cell RNA-seq analysis. Alignments.zip includes aligned sequences for phylogenetic analysis.
DOI: 10.6084/m9.figshare.7681022.v8
title: Enalapril influence on arterial stiffness in rheumatoid arthritis women: a randomized clinical trial.

description: Supplemental material Article Title: Enalapril influence on arterial stiffness in rheumatoid arthritis women: a randomized clinical trial.
DOI: 10.6084/m9.figshare.9906182.v1
title: A Curated RNA-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

description: A curated dataset of RNA-Seq samples. The samples are MDI-induced pre-phagocytes (3T3-L1) at different time points/stage of differentiation. The package document the data collection, pre-processing and processing. In addition to the documentation, the package contains the scripts that was used to generated the data.
DOI: 10.6084/m9.figshare.25848601.v1
title: An enhanced lure for eastern populations of the North American spruce beetle, <i>Dendroctonus rufipennis</i> Kirby (Coleoptera: Curculionidae)

description: These data are counts of spruce beetles (<i>Dendroctonus rufipennis</i> Kirby), Eastern larch beetles (<i>Dendroctonus simplex</i> LeConte), and dubious checkered beetles (<i>Thanasimus dubius</i> F.) captured in multiple funnel traps in response to four different <i>D. rufipennis</i> pheromone lures, including two novel formulations. The data include results from two separate experiments conducted in Fundy National Park, NB, Canada in 2021 and Memramcook, NB, Canada in 2022.
DOI: 10.6084/m9.figshare.22491997.v2
title: CROPGRIDS

description: CROPGRIDS is a comprehensive global, geo-referenced dataset providing information on areas for 173 crops circa the year 2020, at a resolution of 0.05˚ (~5.55 km at the equator). It represents a major update of the Monfreda et al. (2008) dataset. CROPGRIDS updates Monfreda et al. (2008) through the careful evaluation of 26 published gridded datasets covering more recent crop information at regional, national, and global levels, largely over the period 2015 – 2020. The new product successfully updates the area extent for 80 of the 175 crops originally covered, representing an update to 1.2 billion hectares of crop area (i.e., 81% of the total cropland included in CROPGRIDS). CROPGRIDS carries forward the crop type maps originally in Monfreda et al. (2008) for 93 crops as more recent information for these crops is not available. We compared CROPGRIDS harvested area of individual crops against independent national and subnational data from 36 National Statistical Offices (NSOs), national-level crop area data for more than 180 countries and territories from FAOSTAT, as well as geospatially, against a newly available high-resolution (30 m) cropland agreement map (Tubiello et al., 2023). Results indicated robustness against the available independent information, with CROPGRIDS world total harvested and crop areas around 1.5 billion hectares. To the best of our knowledge, CROPGRIDS represents the most comprehensive update of previous work on the subject area, offering a new benchmark of global gridded harvested and crop area data for the year circa 2020. <br> For more information, please refer to: Tang, F. H. M., Nguyen, T. H., Conchedda, G., Casse, L., Tubiello, F. N., and Maggi, F.: CROPGRIDS: A global geo-referenced dataset of 173 crops circa 2020, Earth Syst. Sci. Data Discuss. [preprint], https://doi.org/10.5194/essd-2023-130, in review, 2023.
DOI: 10.6084/m9.figshare.15252804.v1
title: LaMn0.5Fe0.5O3 XRD data

description: LaMn0.5Fe0.5O3 XRD data（300K）
DOI: 10.17632/p6m666p4kb
title: Acoustic Doppler Velocimetry (ADV) data on flow-vegetation interaction in partly vegetated channels with flexible and rigid vegetation

description: This dataset contains measurements of 3D instantaneous flow velocity with acoustic Doppler velocimetry (ADV) in partly vegetated channels with natural-like foliated flexible vegetation and with rigid cylinders. Experiments with natural-like vegetation (F experiments) were carried out at the Environmental Hydraulics Lab of Aalto University (Espoo, Finland), while experiments with rigid cylinders (R experiments) were performed at the Laboratory of Hydraulics of University of Naples Federico II (Naples, Italy). Velocity measurements were carried out for steady, fully developed turbulent flows in partly vegetated channels, along mid-depth transversal transects. 3D instantaneous point velocity was measured with ADV at 200 and 100 Hz, for duration of 120 and 240 s, for F and R experiments, respectively. For each test series three conditions were investigated: F1, F2 and F3, with increasing vegetation reconfiguration (for F experiments); and R1, R2 and R3, with decreasing cylinder density (for R experiments). The ADV measurements for each test run and the video recordings of plants motion (for F experiments) are included in this dataset. The detailed description of the laboratory setup, the experimental conditions, the measurement technique, together with additional information on the provided data are included in the data article linked to this dataset (https://doi.org/10.1016/j.dib.2020.106080).
DOI: 10.17632/4c28f788v4
title: The integrated stress response effector ATF4 is an obligatory metabolic activator of NRF2 

description: original western blot data
DOI: 10.6084/m9.figshare.28694372.v3
title: Osteometric Data of Carpal and Metacarpal bones from Two Indian Skeletal Collections

description: Presents osteometric data of 296 human carpal and 178 human metacarpal bones from two skeletal collections in India. These bones come from adult individuals of unknown age and sex. This data consists of dry weights of carpals and metacarpals, along with seven linear measurements on metacarpal bones. A total of 1638 measurements are presented in the tables.
DOI: 10.6084/m9.figshare.22010315.v1
title: Closely-spaced OSL dating reveals early Holocene dust activity variation in the southern Tibetan Plateau as response to solar irradiance

description: It contains grain size and magnetic susceptibility
DOI: 10.6084/m9.figshare.24330862.v1
title: Supplementary Material for: A SYSTEMATIC REVIEW AND BAYESIAN NETWORK META-ANALYSIS OF MEDICAL THERAPIES FOR LICHEN PLANOPILARIS.

description: BACKGROUND: Lichen planopilaris (LPP) is a primary chronic lymphocytic cutaneous disorder that selectively destroys the hair follicles, resulting in a scarring alopecia. Unfortunately, current available treatments are not fully effective to stop hair loss, and the level of evidence for medical interventions is weak. METHODS: A systematic review and meta-analysis was performed including randomized trials that report the outcomes of lichen planopilaris activity index (LPPAI). These articles were pooled and a network meta-analysis (NAM) was conducted. RESULTS: A total of seven studies was identified and included in meta-analysis, comprising 251 LPP patients. The NMA showed the mean difference in LLPAI was significantly superior with the combination of clobetasol plus N-acetylcysteine (mean difference: -2.0, 95%CI=-3.43- -0.51) and the combination of clobetasol plus pentoxyfilline (mean difference: -1.62, 95%CI=-3.0- -0.25) compared to the treatment of reference (clobetasol). The NMA showed cyclosporine (mean difference: 2.05 95%CI= 0.68-3.49), methotrexate (mean difference: 1.95 95%CI= 1.23-3.17), the combination of methotrexate plus prednisolone (mean difference: 1.56 95%CI= 0.25-2.96) were significantly worse than hydroxychloroquine according to the differences in LLPAI. CONCLUSION: This work is the first NMA in LPP and hence, it can be helpful serving as an initial step towards better evidence-based decisions in the treatment of this challenging condition. We propose a triple combined approach consisting of topical clobetasol, hydroxychloroquine and N-acetylcysteine as resulted in the most effective approach. Considering the poor outcomes observed with pioglitazone, mycophenolate mofetil, and cyclosporine, it is advisable to contemplate the use of these medications in patients who have not responded adequately to more efficacious alternatives.
DOI: 10.6084/m9.figshare.25109204.v1
title: Supplementary Material for: Pulmonary metastasectomy after RFA of hepatocellular carcinoma

description: Introduction
Single distant metastases after radiofrequency ablation (RFA) of hepatocellular carcinoma (HCC) are rare. There are no guidelines for treating patients without liver tumors after resecting lung metastases. 
Case presentation
Here, we report a patient with hepatocellular carcinoma recurring as a single lung metastasis fourteen months after RFA. A 76-year-old woman with primary biliary cholangitis without hepatitis B virus or hepatitis C virus infection had been treated by RFA for a single 16-mm-sized HCC lesion in liver S8. Fourteen months thereafter, despite lack of intrahepatic recurrence, a single new 26-mm-sized mass was found in S10 of the right lung. The patient underwent right lower lobectomy. The histopathological diagnosis was HCC metastasis. Because no residual disease could be found, she was followed up without any additional treatment after surgery. She remains alive with no signs of recurrence three years later. 
Conclusion
HCC patients who relapse with lung metastases but without intrahepatic recurrence after RFA are extremely rare, especially when RFA is used to treat HCC lesions &lt;30 mm. However, it should be noted that, although rare, HCC may recur in the form of extrahepatic metastases after RFA. Furthermore, it is suggested that, as in the presently-described case, at least some patients without intrahepatic recurrence whose lung metastases are completely resected have a good prognosis even without additional treatment for HCC.
DOI: 10.6084/m9.figshare.25723440.v2
title: Automated localization of bird sounds. Analysis and data example.

description: Automated localization of bird sounds. Analysis and data example.
DOI: 10.6084/m9.figshare.27913776.v1
title: <b>Data: Methane-powered sea spiders: Diverse, epibiotic methanotrophs serve as a novel source of nutrition for deep-sea methane seep </b><b><i>Sericosura</i></b>

description: Sericosura sea spiders (family Pycnogonidae) from a methane seep along the southern California margin appear to host a methylotrophic bacterial community on their exoskeleton as an alternative food source. Sea spider-associated bacterial families included the Methylomonadaceae, Methylophagaceae (both gammaproteobacteria), and the Methylophilaceae (betaproteobacteria).
DOI: 10.6084/m9.figshare.4986725.v1
title: UK Weather Data 2014

description: Excel Spreadsheet of UK weather data from July 2014. The Collumn titles are at the bottom of each collumn.
DOI: 10.6084/m9.figshare.14535975.v1
title: Data from "Electrostatic Gating of Ion Transport in Carbon Nanotube Porins: A Modeling Study"

description: COMSOL simulation data from "Electrostatic Gating of Ion Transport in Carbon Nanotube Porins: A Modeling Study".
DOI: 10.6084/m9.figshare.1461655.v1
title: Otolith trace elemental analyses of South American austral hake, Merluccius australis (Hutton, 1872) indicates complex salinity structuring on their spawning/larval grounds

description: This excel file represents the raw data used for this study.
DOI: 10.17632/wbvrdw2x2x
title: Supplemental Material - Comparison of comorbidities and adverse events in dermatology and rheumatology patients prescribed tofacitinib: a retrospective analysis

description: Supplemental methods and results for the publication entitled, “Comparison of comorbidities and adverse events in dermatology and rheumatology patients prescribed tofacitinib: a retrospective analysis.”
DOI: 10.17632/dm4s2vcdgc
title: Gen Z in the workplace

description: References
DOI: 10.6084/m9.figshare.13250396.v1
title: Supplementary files for the PhD thesis "Synergistic triple combination antibiotic therapy for Gram-negative bacterial infections". Olivera, C.D., Massey University

description: <b>Supplementary file 1</b> | <i>E. coli</i> K12 strain K1508 genome sequence<b>Supplementary file 2</b> | <i>E. coli</i> K12 strain K1508 genome annotation<b>Supplementary file 3</b> | DESeq2 results of treatments vs control- log2FC and adjusted p values of all genes<b>Supplementary file 4 </b>| List of DEGs with log2FC and adjusted <i>p</i> values for all the treatments<b></b><b>Supplementary file 5</b> | Results of PANTHER GO overrepresentation analysis of the DEGs for each of the treatments
DOI: 10.6084/m9.figshare.5677585.v1
title: A Transcatheter Valve for all Cardiac Positions

description: A Transcatheter Valve for all Cardiac Positions
DOI: 10.17632/kwmk9k3bhc
title: Dataset of the Perceived Disaster Risk Reduction and Management Program, Projects, and Activities Degree of Attainment, Awareness, and Socio-demographic Variables of Women

description: This data article describes the three dataset used in the path finding analysis. The first dataset is the socio-demographics data of the 1,341 women. The second dataset is for the women’s perceived degree of attainment of the Disaster Risk Reduction and Management (DRMM) programs, project, and activities. And lastly, is the awareness level of women in terms of disaster warning signages, personal and safety measure, evacuation management, first aid measure, and communication network. Data were collected from the multi-stage sampling in the identification of respondents to be given with the survey questionnaire. First, is the stratified sampling for dividing the strata into female and male population. Then, cluster sampling for clustering the female strata situated in the most vulnerable barangay in the Province of Biliran. Afterwards, simple random sampling to identify women’s respondents. Data have been collected from April to May 2019.