cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4450722
title: Flaky Test Dataset to Accompany "FlakeFlagger: Predicting Flakiness Without Rerunning Tests"

description: When developers make changes to their code, they typically run regression tests to detect if their recent changes (re)introduce any bugs. However, many tests are flaky, and their outcomes can change non-deterministically, failing without apparent cause. Flaky tests are a significant nuisance in the development process, since they make it more difficult for developers to trust the outcome of their tests. The traditional approach to identify flaky tests is to rerun them multiple times: if a test is observed both passing and failing on the same code, it is definitely flaky. We conducted a very large empirical study looking for flaky tests by rerunning the test suites of 24 projects 10,000 times each, and found that even with this many reruns, some flaky tests were still not detected. We propose FlakeFlagger, a novel approach that collects a set of features describing the behavior of each test, and then predicts tests that are likely to be flaky based on similar behavioral features. We found that FlakeFlagger correctly labeled at least as many tests as flaky as a state-of-the-art flaky test classifier, but that FlakeFlagger reported far fewer false positives (an increase in precision from just 11% to 60%). This lower false positive rate translates directly to saved time for researchers and developers who use the classification result to guide more expensive flaky test detection processes. By investigating the information gain of each feature, we conclude that test execution time, overall test coverage, coverage of recently changed lines and usage of third party libraries are effective predictors of test flakiness. We did not find any keywords or tokens in the source code of tests that were effective in predicting test flakiness, and did not find the presence of test smells to be effective in predicting test flakiness. This archive contains the dataset that we collected of flaky tests, along with the features that we collected from each test. Contents:<br> Project_Info.csv: List of projects and their revisions studied<br> build-logs-&lt;project-slug&gt;.tgz: An archive of all of the maven build logs from each of the 10,000 runs of that project's test suite. <br> failing-test-reports-&lt;project-slug&gt;.tgz An archive of all of the surefire XML reports for each failing test of each build of each project.<br> test_results.csv: Summary of the number of passing and failing runs for each test in each project. <br> "Run ID" is a key into the &lt;project-slug&gt;.tgz archive also in this artifact, which refers to the run that we observed the test fail on.<br> test_features.csv: Summary of the features that each test had, as per our feature detectors described in the paper<br> flakeflagger-code.zip: All scripts used to generate and process these results. These scripts are also located at https://github.com/AlshammariA/FlakeFlagger
description: This updated revision contains a corrected test_features.csv that contains exactly the set of tests used in our evaluation.
DOI: 10.6073/pasta/ae40e0559010ccfe847dc1525bd23146
title: Litterfall in Hemlock Removal Experiment at Harvard Forest since 2005

description: Hemlock decline in New England is caused by direct and indirect effects of invasion of the hemlock woolly adelgid. Direct damage from the insect is causing gradual mortality of hemlock, and widespread harvesting of hemlock in advance of mortality, in contrast, causes immediate mortality and removal of biomass from the site. Although both processes affect thousands of acres of forest annually we have only a limited understanding of their effects on forest ecosystem function and productivity and the nature of the subsequent forest community. We anticipate that harvesting will yield different consequences than gradual mortality from the insect. Therefore we designed an experiment to simulate these contrasting impacts, by logging or girdling hemlock stands. Results from the experimental treatments will be compared to the changes observed in forests that are being infested by the adelgid, and can also be included in integrated analyses of a suite of large experiments that form a core component of the Harvard Forest LTER program.
DOI: 10.6084/m9.figshare.14818560
title: 897_S69_L008_R2_001.fastq.gz

description: WGS dataset for mammary-specific TRIM24 driven transgenic mice.
DOI: 10.6084/m9.figshare.14818560.v1
title: 897_S69_L008_R2_001.fastq.gz

description: WGS dataset for mammary-specific TRIM24 driven transgenic mice.
DOI: 10.6084/m9.figshare.14818542
title: 897_S69_L008_R1_001.fastq.gz

description: WGS dataset for mammary-specific TRIM24 driven transgenic mice.
DOI: 10.6084/m9.figshare.14818542.v1
title: 897_S69_L008_R1_001.fastq.gz

description: WGS dataset for mammary-specific TRIM24 driven transgenic mice.
DOI: 10.6073/pasta/e705ae6731f806f03f9444d9db165e56
title: Plantation Biodiversity Plots at Harvard Forest since 2007

description: Plantations have been part of forestry at Harvard Forest since its beginning. Plantations were established from 1911-1944, usually on open or cut-over land. The objectives for plantation forests at Harvard Forest were to: increase amount of productive forest land; examine the suitability of various species and cultivars to New England conditions; and test planting and tending methods. At first, mainly small plantings (less than 1 to 4 acres) were established primarily on "blank" lands. Some larger plantations (20+ acres) were established on cut-over land around 1930. The bulk of the plantings were red pine, white pine and spruce (white and Norway), but several other conifers were also planted. The maximum amount of land in plantations came to about 270 acres (less than 10% of Harvard Forest’s land base). Tending of the plantations, especially weeding in the decade following establishment, but also in-filling, pruning and thinning, was conducted and carefully documented. However, tending of plantations ceased about 1950. Since then, the fate of the plantations has been mixed. Some plantations were out-competed by native forest with only scattered planted trees remaining. A few acres of plantations were harvested in the 1950s. About 40 acres of plantations were harvested in the 1990s. As of 2007, approximately 135 acres remained. These stands range in age from 60-90 years old. Some stands have substantial areas blown down. We developed a management plan to harvest about 80 acres of mature plantation forests beginning in 2008 in order to terminate these long term experiments, to regenerate a diversity of native tree species and restore native forests to these sites, and to initiate a new suite of long term experiments. For the next 10-15 years, the harvested areas will provide early successional habitat for a variety of wildlife species. A suite of permanent vegetation plots was established throughout the plantations to assess vegetation structure in plantations and predict future dynamics in harvested and early seral habitats. An initial objective of the baseline survey was to characterize current tree regeneration and understory flora that will in large part determine the future composition of these forests as the overstory is harvested or senesces.
DOI: 10.5281/zenodo.4925829
title: Library of price and performance data of domestic and commercial technologies for low-carbon energy systems

description: This library consists of extensive price and performance data of commercially available technologies for low-carbon energy systems on the UK market, including domestic and commercial applications. All information is obtained from published manufacturer datasheets and pricelists. The library contains useful information for energy-system and technology modellers in their efforts to capture the techno-economic characteristics of different technology options, minimise uncertainties and suggest reliable system- and technology-design strategies. The data analysis shows how technology characteristics vary with component choice, technology size and to capture the spread of values found between different suppliers, which can be used to determine uncertainty bounds on key performance indicators. Fitting techniques can be used to determine relationships arising from the collected data, infer values for which data are not available and quantify the related variability in technology characteristics. This work was conducted by members of the Clean Energy Processes (CEP) Laboratory and is part of Project 2 of the Integrated Development of Low-Carbon Energy Systems (IDLES) project. IDLES brings together researchers across Imperial College London and partner organisations and companies to provide the evidence needed to facilitate a cost-effective and secure transition to a low-carbon future. The overarching aim of Project 2 is: (i) to characterise current and new/future technologies in terms of cost and performance to provide evidence for whole-energy system modelling; and (ii) to extend the capabilities of whole-energy-system models so that they can, apart from optimising energy network infrastructures, provide information to manufacturers about the optimal choice of materials, components and the design of key technologies. The library will be updated regularly as more data regarding existing and new technologies are collected.
DOI: 10.6073/pasta/a4b0a54dddc6af93d7a45617a1ae3e0b
title: Short-Term Effects on Vegetation in Soil Warming Plus Nitrogen Addition Experiment at Harvard Forest 2006

description: The purpose of this experiment is to examine the interactive affects of warming and N additions on plant diversity. The experiment consists of four treatments (control, heated +N, heated -N, +N only) with six replicates per treatment in a completely randomized design. Average soil temperature in the heated plots will be elevated 5 deg C above ambient by the use of buried heating cables placed at 10 cm depth in the soil and spaced 20 cm apart. The heating cables will be controlled by a data logger that monitors thermistors (5 per plot) every 10 min. Plots will automatically turn on and off to maintain a 5 deg C temperature difference between the heated and control plots. The N addition plots (heated +N, +N only) will be fertilized following the protocol of the Chronic Nitrogen Addition Study. An aqueous solution of NH4NO3 will be applied at a rate equivalent to the low N plots at the chronic N study (5 g m-2 yr-1). Fertilizer will be applied in equal monthly doses during the growing season (Apr-Oct). The control plots and unfertilized, heated plots (heated -N) will receive water only.
DOI: 10.5066/p9zzq2ot
title: Geospatial bathymetry datasets for New York City's East of Hudson Reservoirs and Controlled Lakes

description: From May 2017 to November 2019, the U.S. Geological Survey conducted bathymetry surveys of New York City's East of Hudson Reservoirs. The East of Hudson Reservoirs consist of 16 reservoirs and controlled lakes in Putnam and Westchester County, New York, including Amawalk Reservoir, Bog Brook Reservoir, Boyd Corners Reservoir, Cross River Reservoir, Croton Falls Reservoir, Diverting Reservoir, East Branch Reservoir, Kensico Reservoir, Kirk Lake, Lake Gilead, Lake Gleneida, Middle Branch Reservoir, Muscoot Reservoir, New Croton Reservoir, Titicus Reservoir, and West Branch Reservoir. The East of Hudson Reservoirs form New York City's Croton Water Supply System, and also include parts of the Catskill/Delaware Water Supply System. Depth data were collected primarily with a multibeam echosounder; additional bathymetry points were measured using an acoustic Doppler current profiler (ADCP). Quality assurance points were measured with a single-beam echosounder. Water surface elevations were established using real-time kinematic (RTK) and static global navigation satellite system (GNSS) surveys and submersible pressure transducers. Measured sound velocity profiles were used to correct echosounder depth measurements for thermal stratification. Digital elevation models were created by combining the measured bathymetry data with lidar elevation data surrounding the reservoirs; gaps in the combined data were estimated (for example the tops of submerged islands) or interpolated. Files included in this Data Release include: grids (tiff format) of reservoir bed elevation, data source, and cell data standard deviation; shapefiles of elevation contours at a 2-foot interval and of single-beam echosounder quality assurance points; and text files (comma-separated value format) of elevation-area-capacity tables for each reservoir, measured GNSS points, water surface elevation time series (tides) used to process echosounder data, measured sound velocity profiles, and average sound velocity profiles used to process echosounder data. Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government.
DOI: 10.5066/p9l4kbdc
title: The North American Breeding Bird Survey in Mexico, 2008-2018 - unprocessed data

description: This dataset includes all North American Breeding Bird Survey data collected in Mexico between 2008-2018. These data were used as the basis for all analyses discussed in an associated publication: The North American Breeding Bird Survey in Mexico, 2008-2018 - A Status Report; https:doi.org/10.3133/cir1479. The records include avian point count data for all reported taxa (species, races, and unidentified species groupings). In addition to avian count data, this dataset also contains survey date, survey start and end times, start and end weather conditions, a unique observer identification number, route identification information, and route location information including country, state, and BCR, as well as geographic coordinates of each route's start location. These data were collected annually during the breeding season, primarily in May, June and July, along randomly established roadside survey routes in seven states in northern Mexico (Baja California Sur, Baja California, Sonora, Chihuahua, Coahuila, Nuevo Leon and Tamaulipas). Routes are roughly 24.5 miles (39.2 km) long with counting locations placed at approximately half-mile (800-m) intervals, for a total of 50 stops. A brief summary of the methodology is as follows: At each stop a person highly skilled in avian identification conducts a 3-minute point count, recording every bird seen within a quarter-mile (400-m) radius, or heard at any distance (excluding birds believed to have been recorded at a previous stop). Surveys begin 30 minutes before local sunrise and take approximately 5 hours to complete. Routes are sampled once per year. NOTE: The data in this release include all records reported. They have not been subjected to the rigorous quality control screening that BBS data from the U.S. and Canada receive. Therefore, these data are NOT intended to be lumped with U.S. and Canada data for pooled population analyses.
DOI: 10.6073/pasta/a66be7df0412d288d84e6028e49ec263
title: Umbilicaria Mammulata and Nitrogen Deposition at Harvard Forest 2006

description: Atmospheric N has quadrupled due to anthropogenic inputs and is projected to double again by 2050. The lichen Umbilicaria mammulata relies primarily on atmospheric deposition for nutrients, including N. Much of this species’ geographic distribution coincides with the N deposition gradient in the eastern US. We were interested in the potential impacts of N deposition on this species under realistic field conditions. Lichens were collected at six sites, ranging from Maine (low deposition) to West Virginia (high deposition). Thalli were analyzed for %C, %N, C:N, specific thallus weight (a measure of thickness), chlorophyll content, and chlorophyll fluorescence. Using stepwise regression we identified the most predictive model(s) using N deposition, environmental variables, and climate to predict differences in lichen ecophysiology and biochemistry across the gradient. While N deposition was important in predicting some responses, the model that best predicted %N in lichen only included mean minimum temperature, mean annual precipitation, and substrate slope. In controlled experiments at Grandfather Mountain (Linville NC) lichens were fertilized in situ with N to mimic deposition projected for 2050. There were no significant differences between control and fertilized thalli for any response variables, but differences did exist among sites. The results of this study highlight the complexities associated with sampling along a gradient of one factor in a multivariate environment.
DOI: 10.6073/pasta/6de12324a2776411ef65efb00dc1bf8c
title: Barn Tower Meteorological Station at Harvard Forest since 2015

description: The Barn Tower (40 m) was installed in 2009 to support meteorological and phenological measurements and to provide a relay point for the Harvard Forest field wireless network. A wind instrument was later installed at the top of the tower to provide continuous measurements of wind speed and direction.
DOI: 10.15468/4mq6uw
title: Macrobiotus polonicus, a new species of Tardigrada from Poland (Eutardigrada: Macrobiotidae, ‘ hufelandi group’)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Pilato, Giovanni, Kaczmarek, Łukasz, Michalczyk, Łukasz, Lisi, Oscar (2003): Macrobiotus polonicus, a new species of Tardigrada from Poland (Eutardigrada: Macrobiotidae, ‘ hufelandi group’). Zootaxa 258 (1): 1-8, DOI: 10.11646/zootaxa.258.1.1, URL: https://biotaxa.org/Zootaxa/article/view/zootaxa.258.1.1
DOI: 10.5281/zenodo.5012561
title: Spin-up time and internal variability analysis for overlapping time slices in a regional climate model

description: In order to increase computational efficiency, several long-term regional climate simulations were split into overlappings time slices. These overlappings slices were used to explore the relative role of spin-up time and internal variability in the discontinuities that are produced once the slices are joined. This dataset was generated using the Weather Research and Forecasting (WRF) model and includes two sets of time slices for the periods 2002-2006 and 2006-2010 over the CORDEX South American domain at 0.44º horizontal resolution (SAM-44), regular on a rotated latitude-longitude projection. The data was forced by the scenario RCP 8.5 and driven by the Canadian Earth System model (CanESM2).
DOI: 10.15468/2hb9bh
title: A new species of Ashlockobius (Heteroptera: Rhyparochromidae: Myodochini) from Venezuela

description: This dataset contains the digitized treatments in Plazi based on the original journal article Dellapé, Pablo Matías (2003): A new species of Ashlockobius (Heteroptera: Rhyparochromidae: Myodochini) from Venezuela. Zootaxa 289 (1): 1-6, DOI: 10.11646/zootaxa.289.1.1, URL: https://biotaxa.org/Zootaxa/article/view/zootaxa.289.1.1
DOI: 10.6073/pasta/005af0fe806a319814f185254836bddb
title: Blue Crab Densities in a Landscape Context on the Virginia Coast, Summer 2019

description: Table 1 Crab Data : Blue crab (Callinectes sapidus) abundance was sampled at twenty-four sites in Spider Crab Bay, Cobb Bay, and South Bay (comprising two large seagrass meadows: "South Bay" for the northern portion and "Ship Shoal" for the southern portion) as part of a study to evaluate the drivers of blue crab spatial patterns across restored seagrass meadows in the coastal bays of Virginia, USA. The four meadows are representative of seagrass meadows in the region that have recovered after experiencing large declines due to wasting disease and storms (Orth et al., 2006). Each meadow contained six fixed sampling sites. Each captured crab's morphological and demographic characteristics were evaluated; as such, data are presented at the individual level. Table 2 Landscape Data: Landscape measurements were taken for twenty-four sites in Spider Crab Bay, Cobb Bay, and South Bay (comprising two large seagrass meadows: "South Bay" for the northern portion and "Ship Shoal" for the southern portion) as part of a study to evaluate the drivers of blue crab spatial patterns across restored seagrass meadows in the coastal bays of Virginia, USA. The four meadows are representative of seagrass meadows in the region that have recovered after experiencing large declines due to wasting disease and storms (Orth et al. 2006). Each meadow contained six fixed sampling sites. All landscape measurements were made using QGIS 3.14.0 (QGIS.org 2020). Seagrass landscape measurements were calculated using maps developed from aerial imagery by Orth et al. (2019). Oyster reefs polygons were mapped by Ross and Luckenbach (2009). Salt marsh polygons were mapped by Berman et al. (2011) and modified based on imagery from Planet Team (2019).
DOI: 10.23708/dxrs5h
title: Enquête sociodémographique et foncière sur le terroir de Brakaguhé en 2016

description: Collections de données créés à l'occasion de l'opération de recherche à Brakaguhé (Centre-Ouest de la Côte d'Ivoire) en 2016; Les données sociodémographiques ainsi que la superficie totale par exploitant et les quantités de production agricole annuelle, ont été collectées auprès de tous les exploitants, les propriétaires de parcelles présents sur le territoire villageois. La collecte de données a été réalisée par questionnaire, interview et par des relevés de limites de parcelle par GPS. Des questionnaires démographiques, parcelles, et exploitations ont été mis au point.
DOI: 10.18739/a2v11vm6z
title: Scripps carbon dioxide (CO2) program data, Alert, Canada (1985-present) and Point Barrow, Alaska (1961-1964 and 1974-present)

description: This dataset consists of time-series measurements of carbon dioxide (CO2) concentration and CO2 isotopic composition (carbon isotope ratio (13C/12C) and oxygen isotope ratio (18O/16O)) from flasks collected at two stations: (1) Utqiaġvik (Barrow), Alaska and (2) Alert, Nunavut, on the north-eastern tip of Ellesmere Island. The flasks are collected by staff from the Barrow Atmospheric Baseline Observatory, operated by Global Monitoring Laboratory of the National Oceanographic and Atmospheric Administration and by staff from the Neil Trivett Global Atmospheric Watch Observatory operated by Environment and Climate Change Canada. The flasks are returned to the Scripps Institution of Oceanography at University of California (UC) San Diego where they are analyzed for CO2 concentration using infrared analysis and analyzed for CO2 isotopes using magnetic sector mass spectrometry. The measurements are reported on scales for CO2 concentration and CO2 isotopic composition that are maintained at the Scripps Institution of Oceanography. These datasets are among the longest ongoing times series of CO2 and its isotopes in the Arctic. These datasets are relevant for assessing Arctic sources and sinks of carbon dioxide and biogeochemical changes, such as large-scale changes in net ecosystem productivity and water-use efficiency, at high northern latitudes. Routine flask collections began in 1974 at Barrow, and 1985 at Alert. Isotopic analyses in flasks from Barrow started in 1982. Prior to 1992, the isotopic measurements were made at the laboratory of Professor. Wim Mook in Groningen.
DOI: 10.6084/m9.figshare.14825004
title: welfare database

description: This database contains variables about the welfare of population in Ecuador (2014 -2015) and management of solid waste of the municipalities where they are located.
DOI: 10.5281/zenodo.4048659
title: Convergent geographic patterns between grizzly bear population genetic structure and Indigenous language groups in coastal British Columbia

description: Microsatellite loci calls, sex, and mean centre detection per individual (GrizzlyMicroLociMeanXY.csv) and code associated with the paper: "Convergent geographic patterns between grizzly bear population genetic structure and Indigenous language groups in coastal British Columbia". All code is from published R packages or GitHub repositories not created by the author. Code used is best described in these alternate resources.