cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17966388
title: Associated LCMS data from "The extra-terminal domain drives the role of BET proteins in transcription"

description: Here we provide the LCMS data used in the publication "The extra-terminal domain drives the role of BET proteins in transcription". Descriptions of the measured sample for each raw file are provided (Pasionek_LCMS_metadata.xlsx).

Publication Abstract

BET proteins facilitate transcription of most eukaryotic genes, but the specific mechanisms by which BET proteins perform their functions remain poorly understood. As chromatin readers, BET proteins use their tandem bromodomains to interact with acetylated lysine residues on histones and other protein partners. However, recent findings illustrate that bromodomain activity does not fully explain the role of BET proteins in transcription, highlighting the significance of other BET protein domains. We evaluated the importance of all conserved domains of BET proteins and determined that the extra-terminal (ET) domain is essential for cell viability, genome-wide transcription and BET protein chromatin occupancy. Furthermore, we provide evidence that the ET domain performs these functions by serving as a hub for interactions with other factors involved in transcription regulation. Our findings expand current understanding of the complex biology of BET proteins and suggest a potential mechanism by which cells can bypass bromodomain inhibition in pathologic states.
DOI: 10.5281/zenodo.17966389
title: Associated LCMS data from "The extra-terminal domain drives the role of BET proteins in transcription"

description: Here we provide the LCMS data used in the publication "The extra-terminal domain drives the role of BET proteins in transcription". Descriptions of the measured sample for each raw file are provided (Pasionek_LCMS_metadata.xlsx).

Publication Abstract

BET proteins facilitate transcription of most eukaryotic genes, but the specific mechanisms by which BET proteins perform their functions remain poorly understood. As chromatin readers, BET proteins use their tandem bromodomains to interact with acetylated lysine residues on histones and other protein partners. However, recent findings illustrate that bromodomain activity does not fully explain the role of BET proteins in transcription, highlighting the significance of other BET protein domains. We evaluated the importance of all conserved domains of BET proteins and determined that the extra-terminal (ET) domain is essential for cell viability, genome-wide transcription and BET protein chromatin occupancy. Furthermore, we provide evidence that the ET domain performs these functions by serving as a hub for interactions with other factors involved in transcription regulation. Our findings expand current understanding of the complex biology of BET proteins and suggest a potential mechanism by which cells can bypass bromodomain inhibition in pathologic states.
DOI: 10.48577/jpl.ewnb7q
title: Thermal Design and Analysis of a Passively Cooled, Low Temperature Cryogenic Astrophysical Observatory in Low Earth Orbit

description: No abstract available.
DOI: 10.7910/dvn/8kq3jy
title: Replication Data for: "Aiding Peace or Conflict? The Impact of USAID Cuts on Violence"

description: This replication package reproduces all figures and tables in the paper.
DOI: 10.7910/dvn/nijcqh
title: Dataset for: A Randomized Controlled Trial of Early Nutritional Intervention in Malnourished Bangladeshi Children: GAMLSS-Derived EEG Power Z-Scores Reveal Partial Neurodevelopmental Recovery

description: https://wellcomeleap.org/1kd/program/ 

School children are most likely to succeed if they are attentive, resist distractions, follow instruction, plan and organize activity and problem solve. These capabilities rely on executive functions (EFs) and emotion regulation (ER), skills that are inter-correlated and predictive of lifelong behavioral, emotional, academic and social function. EF/ER also provide the essential building blocks for success in meeting challenges across the lifespan. In contrast, executive dysfunction (EDF) and emotion dysregulation (EDR) predict poor interpersonal relationships, educational failure, reduced earnings, criminality, and compromised mental and physical health. Our mission targets the first 1000 days of life to improve brain health across the population.
description: Berit Hartjen1,2,3, Shahria Kakon4, Mary Zhuo Ke1, Chris Camp5, Navin Rahman1, Garrett Greaves1, Eileen F. Sullivan1,2, Fahmida Tofail4, Dustin Scheinost5, Terrence Forrester6, Justin O’Sullivan7, Rashidul Haque1,4, Charles A. Nelson1,2,8

1Division of Developmental Medicine, Boston Children’s Hospital, Boston, MA, USA 2Harvard Medical School, Boston, MA, USA 
3Neuroscience Program, College of William & Mary, Williamsburg, VA, USA 
4Infectious Diseases Division, International Centre for Diarrheal Disease Research, Dhaka, Bangladesh 
5Yale School of Medicine, New Haven, CT, USA 
6Faculty of Medical Sciences, UWI Solutions for Developing Countries, The University of the West Indies (UWI), Jamaica 
7The Liggins Institute, The University of Auckland, Auckland, New Zealand 
8Harvard Graduate School of Education, Cambridge, MA, USA
DOI: 10.15468/dl.sgxcfz
title: Occurrence Download

description: A dataset containing 65535 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is OAC-BIO Herbarium"
 ]
}

 The dataset includes 65535 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063188-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.13035.40488
title: Restoring Heavly Polluted Branchs of thge Shatt al-Arab River
DOI: 10.5281/zenodo.18020709
title: Peptidomic profiling reveals extracellular matrix remodeling signatures discriminative of progression to multiple myeloma

description: This dataset contains urinary peptidomic profiles generated by capillary electrophoresis coupled to mass spectrometry (CE–MS) from patients with multiple myeloma (MM), monoclonal gammopathy of undetermined significance (MGUS), smoldering multiple myeloma (sMM), and non-malignant controls.

The data were generated to investigate systemic extracellular matrix remodeling associated with disease initiation and progression in plasma cell neoplasia. Urine samples were processed using standardized CE–MS workflows, and detected peptide features were annotated by molecular mass, migration time, and signal intensity. Processed peptide datasets and associated metadata are provided.

The dataset supports biomarker discovery and validation analyses described in the associated research manuscript entitled “CE–MS–derived urinary peptide biomarkers to classify multiple myeloma and precursor states.” The data may be reused for method development, comparative peptidomics, and studies on non-invasive disease monitoring.

The study was conducted within ELMUMY project (Grant agreement ID: 101097094) funded by the European Commission.
DOI: 10.7910/dvn/cjizqg
title: Emirps generated by a(n) = floor(n*(n+1)/e) (sequence)

description: This dataset is a sequence of emirps generated by the formula a(n) = floor(n*(n+1)/e). I raise the question of whether there are infinitely many such prime numbers.
DOI: 10.15468/dl.rfdkyf
title: Occurrence Download

description: A dataset containing 969 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kenya",
 "OccurrenceStatus is Present",
 "TaxonKey is Ceratotherium simum"
 ]
}

 The dataset includes 969 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063192-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gcf5wr
title: Occurrence Download

description: A dataset containing 70426 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sorex minutus"
 ]
}

 The dataset includes 70426 records from 531 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063182-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b3wq7x
title: Occurrence Download

description: A dataset containing 2644 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Causonis trifolia (L.) Mabb. & J.Wen",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2644 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262821-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wveba3
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Viburnum foetidum var. ceanothoides (C.H.Wright) Hand.-Mazz."
 ]
}

 The dataset includes 102 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0170216-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jj4vrr
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Koanophyllon juninense (B.L.Rob.) R.M.King & H.Rob."
 ]
}

 The dataset includes 6 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001414-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jdc78j
title: Occurrence Download

description: A dataset containing 3674 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudacris nigrita (LeConte, 1825)"
 ]
}

 The dataset includes 3674 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0203863-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zfqcmd
title: Occurrence Download

description: A dataset containing 894 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Diabrotica virgifera, Diabrotica virgifera, Diabrotica virgifera, 161627063, Diabrotica virgifera LeConte, 1868, Diabrotica virgifera J.L.LeConte, 1868, Diabrotica virgifera LeConte, 1868, Diabrotica virgifera LeConte, 1858, Diabrotica virgifera LeConte, 1868, Diabrotica virgifera J.L.LeConte, 1868, Diabrotica virgifera J.L.LeConte, 1868, Diabrotica virgifera LeConte, 1868, 157606936, Diabrotica virgifera J.L.LeConte, 1868, Diabrotica virgifera LeConte, 1858, Diabrotica virgifera LeConte, 1868, Diabrotica virgifera J.L.LeConte, 1868, Diabrotica virgifera LeConte, 1868, Diabrotica virgifera J.L.LeConte, 1868, Diabrotica virgifera J.L.LeConte, 1868, Diabrotica virgifera LeConte, 1858, Diabrotica virgifera LeConte, 1868, Diabrotica virgifera virgifera virus 1, Diabrotica virgifera virgifera virus 2, Wolbachia endosymbiont of Diabrotica virgifera, Wolbachia endosymbiont of Diabrotica virgifera, Diabrotica virgifera virgifera virus 1, Diabrotica virgifera virgifera virus 3, Diabrotica virgifera virgifera virus 3, Diabrotica virgifera virgifera virus 2, Wolbachia endosymbiont of Diabrotica virgifera zeae, Diabrotica virgifera J. L. LeConte, 1868, Wolbachia endosymbiont of Diabrotica virgifera virgifera, Wolbachia endosymbiont of Diabrotica virgifera zeae, Wolbachia endosymbiont of Diabrotica virgifera virgifera, Acalymma vittatum (Fabricius, 1775), Diabrotica balteata LeConte, 1865, Zea mays L.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 894 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262807-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2q48vz
title: Occurrence Download

description: A dataset containing 35597 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudacris regilla (Baird & Girard, 1852)"
 ]
}

 The dataset includes 35597 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0203871-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tggm3b
title: Occurrence Download

description: A dataset containing 11121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Occurrence evidence)",
 "Country is Greece",
 "OccurrenceStatus is Present",
 "TaxonKey is Emberiza calandra Linnaeus, 1758",
 "Year 1990-2022"
 ]
}

 The dataset includes 11121 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0289080-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4rgrct
title: Occurrence Download

description: A dataset containing 44483 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Canadian Museum of Nature Mammal Collection",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 44483 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0203869-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v84bjr
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ipomoea harlingii D.F.Austin"
 ]
}

 The dataset includes 8 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0253864-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ragy6q
title: Occurrence Download

description: A dataset containing 3704 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((36.6502 -3.20736,36.65116 -3.28219,36.72107 -3.32196,36.75315 -3.33221,36.80792 -3.31303,36.83447 -3.33081,36.85596 -3.33701,36.88319 -3.32448,36.87326 -3.29384,36.90977 -3.25835,36.84924 -3.23724,36.88054 -3.20366,36.86725 -3.18951,36.80408 -3.19503,36.7884 -3.16562,36.76757 -3.17681,36.76271 -3.1612,36.74964 -3.16248,36.72241 -3.16913,36.70424 -3.16498,36.6502 -3.20736))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 3704 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230390-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.59zbrg
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Koanophyllon isillumense (B.L.Rob.) R.M.King & H.Rob."
 ]
}

 The dataset includes 17 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001405-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ukkmf3
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Grona heterophylla (Willd.) H.Ohashi & K.Ohashi",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 38 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0207066-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r8qy2r
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heptaptera colladonioides Margot & Reut."
 ]
}

 The dataset includes 56 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240758-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.47u4tv
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ossoides lineatus Bierman, 1910",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196689-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h86hmk
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Artemisia simulans Pamp."
 ]
}

 The dataset includes 39 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001428-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ew6xzj
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lagidina Malaise, 1945",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 90 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196702-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r7xksv
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Osmia orientalis Benoist, 1929",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 34 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196699-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.32re64
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Otocolobus manul (Pallas, 1776)"
 ]
}

 The dataset includes 17 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196713-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s92a46
title: Occurrence Download

description: A dataset containing 471 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leavenworthia alabamica Rollins"
 ]
}

 The dataset includes 471 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005175-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.75kdsj
title: Occurrence Download

description: A dataset containing 2362 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudacris ornata (Holbrook, 1836)"
 ]
}

 The dataset includes 2362 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0203866-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p7g37y
title: Occurrence Download

description: A dataset containing 939 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leavenworthia exigua Rollins"
 ]
}

 The dataset includes 939 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005179-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.96swb6
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rorippa ×brachyceras (Honda) Kitam.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 51 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0207056-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z5ngza
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Occurrence evidence)",
 "Country is Greece",
 "OccurrenceStatus is Present",
 "TaxonKey is Emberiza calandra Linnaeus, 1758",
 "Year 1990-2022"
 ]
}

 The dataset's 3 records were derived from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0289083-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ugj2c
title: Occurrence Download

description: A dataset containing 11121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Occurrence evidence)",
 "Country is Greece",
 "OccurrenceStatus is Present",
 "TaxonKey is Emberiza calandra Linnaeus, 1758",
 "Year 1990-2022"
 ]
}

 The dataset includes 11121 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0289082-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uxssuq
title: Occurrence Download

description: A dataset containing 280 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anterhynchium flavomarginatum (Smith, 1852)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 280 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0208533-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.