cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/43x8pj8pxp.1
title: Data for: Late Miocene stratigraphy, palaeoclimate and evolution of the Sandanski Basin (Bulgaria) and the chronology and causes of the Pikermian faunal changes

description: End-member modelling of grain-size distribution; Optimal number of significant end-members (Suppl. Data 1) Palaeomagnetic directions (Suppl. Data 2)
DOI: 10.17632/r437p9sdrp.1
title: Data for: Understanding drinking among midlife men in the United Kingdom: A systematic review of qualitative studies

description: Supplementary files which outline the systematic review strategy, and CASP review for inclusion of research studies. Illustrative quotes from manuscripts included in the systematic review. Explanation for why each included study was relevant to the research question posed by the review.
DOI: 10.5061/dryad.18tb602/1
title: Gibba - Data (Raw)
DOI: 10.5061/dryad.1b776v2/10
title: Figure 2a cre positive

description: Figure 2a,  example
DOI: 10.5061/dryad.1b776v2/11
title: TEC sort cre negative Figure 1a

description: Figure 1a
DOI: 10.5061/dryad.1b776v2/3
title: Figure4Cmir181

description: Figure4Cmir181
DOI: 10.5061/dryad.1b776v2/4
title: Figure5A1mir181

description: Figure5A1mir181
DOI: 10.5061/dryad.1b776v2/5
title: Figure5Bmir181

description: Figure5Bmir181
DOI: 10.5061/dryad.1b776v2/6
title: FIgure5DMir181

description: FIgure5DMir181
DOI: 10.5061/dryad.1b776v2/7
title: Figure5Cmir181
DOI: 10.5061/dryad.1b776v2/8
title: Figure2Band3mir181

description: Figure2Band3mir181
DOI: 10.5061/dryad.1b776v2/9
title: Figure 2a cre- mouse

description: Figure 2a example FCS file
DOI: 10.5061/dryad.1c9g5mm/11
title: min20.phy

description: Concatenated phylip alignment for the dataset containing minimum 20 samples per locus. See "params_Darter_m20_RAxML.txt" for more information on assembly parameters.
DOI: 10.5061/dryad.1c9g5mm/13
title: min4.nex

description: Concatenated nexus alignment for the dataset containing minimum 4 samples per locus. See "params_Darter_m4_RAxML.txt" for more information on assembly parameters.
DOI: 10.5061/dryad.1c9g5mm/14
title: min10.nex

description: Concatenated nexus alignment for the dataset containing minimum 10 samples per locus. See "params_Darter_m10_RAxML.txt" for more information on assembly parameters.
DOI: 10.5061/dryad.1c9g5mm/15
title: min20.nex

description: Concatenated nexus alignment for the dataset containing minimum 20 samples per locus. See "params_Darter_m20_RAxML" for more information on assembly parameters.
DOI: 10.5061/dryad.1c9g5mm/16
title: min30.nex

description: Concatenated nexus alignment for the dataset containing minimum 30 samples per locus. See "params_Darter_m30_RAxML.txt" for more information on assembly parameters.
DOI: 10.5061/dryad.1c9g5mm/17
title: params_Darter_m4_RAxML

description: Pyrad parameter file for minimum 4 samples per locus assembly.
DOI: 10.5061/dryad.1c9g5mm/18
title: params_Darter_m10_RAxML

description: Pyrad parameter file for minimum 10 samples per locus assembly.
DOI: 10.5061/dryad.1c9g5mm/19
title: params_Darter_m20_RAxML

description: Pyrad parameter file for minimum 20 samples per locus assembly.
DOI: 10.5061/dryad.1c9g5mm/20
title: params_Darter_m30_RAxML

description: Pyrad parameter file for minimum 30 samples per locus assembly.
DOI: 10.5061/dryad.1c9g5mm/21
title: Figure A1

description: Figure A1. Species trees inferred by tetrad, with bootstrap support values = 100% unless indicated. Nodes with less than 50% boostrap support have been collapsed. White nodes represent topological conflicts between the tetrad min4 tree and min30 tree. Gray nodes represent topological conflicts between either of the tetrad trees and the RAxML tree (Fig. 1). Black nodes represent topological conflicts between the tetrad min4 tree and m30 tree plus conflict between either of the tetrad trees and the concatenated RAxML tree.
DOI: 10.5061/dryad.1s471m3/1
title: Posterior lobe shape (PC1) under control treatment

description: Mean PC1 scores for DGRP strains under the control treatment.
DOI: 10.5061/dryad.1s471m3/2
title: Posterior lobe shape (PC1) under geldanamycin treatment

description: Mean PC1 scores for DGRP strains under the geldanamycin treatment.
DOI: 10.5061/dryad.1s471m3/3
title: Posterior lobe shape (PC2) under control treatment

description: Mean PC2 scores for DGRP strains under the control treatment.
DOI: 10.5061/dryad.21qb8m0/1
title: Data of analyzed measures

description: This file contains choice data from an experiment testing the effects of color preference on sampling and tracking in bumble bees. There tabs for the subject data, the treatment data, and both the blocked and whole mean data for the series of measures in the paper.
DOI: 10.5061/dryad.2rh61k0/1
title: Age, Ornamentation, and Parasite Status and History in Common Yellowthroats
DOI: 10.5061/dryad.3dn0045/2
title: Data and code

description: EEG data (in DATA.mat) and nifti fMRI activations maps (unthresholded). Matlab function plot_code_Sep2018.m for reproducing all main and supplementary figures in the paper. Readme details in the plot_code_Sep2018.m.
DOI: 10.5061/dryad.3mr46n0/1
title: BDind: Site, amphibian species, local and landscape data
DOI: 10.5061/dryad.42v01vc/1
title: data about intrinsic viscosity, API fluid loss and setting time
DOI: 10.5061/dryad.443gv60/2
title: Supplementary Tables R_neurology

description: Tables 1-6
DOI: 10.5061/dryad.4467407/4
title: ASTRAL tree

description: ASTRAL species tree inferred from 351 UCE loci.
DOI: 10.5061/dryad.4467407/5
title: BPP_SpeciesTrees

description: Species trees inferred from BPP analysis of 500 UCE loci.
DOI: 10.5061/dryad.4467407/6
title: ExaBayes_ConsensusExtendedMajorityRuleNewick

description: Consensus tree from concatenated ExaBayes analysis of all 3384 UCE loci.
DOI: 10.5061/dryad.4467407/7
title: besttrees_3384

description: Best trees file (ML gene trees) used as input for SNaQ analyses.
DOI: 10.5061/dryad.4467407/8
title: triseriatus75final-53-SVDQ-ladderized

description: SVDquartets species tree inferred using all 3384 loci.
DOI: 10.5061/dryad.4467407/9
title: triseriatus75final_svdquartets_bSTree

description: SVDquartets bootstrap consensus tree inferred using all loci.
DOI: 10.5061/dryad.48s4f93/1
title: NHMD-141985 Oervigia nordica - Raw Scan Data
DOI: 10.5061/dryad.48s4f93/2
title: Supplementary Information

description: Additional Data and Cladograms, Character List, and Character Matrix
DOI: 10.5061/dryad.48s4f93/5
title: Celsiodon Tooth Plates
DOI: 10.5061/dryad.48s4f93/6
title: nhmd-141985 Tooth Plates
DOI: 10.5061/dryad.48s4f93/7
title: nhmd154310 Tooth Plates
DOI: 10.5061/dryad.4hj00fr/1
title: Quebec Forest Data for Adair et al Ecology Letters

description: Forest carbon data with abiotic, biotic, and diversity variables.
DOI: 10.5061/dryad.5sh56g0/1
title: QL178Arlequin

description: The microsatellite data of 178 giant pandas from the Qinling Mountains, in Arlequin format.
DOI: 10.5061/dryad.61jn743/1
title: zipped archive of all code and data

description: R code and BAMM analyses to replicate analyses described in article
DOI: 10.5061/dryad.709ch3g/1
title: Intraspecific brain size variation between coexisting sunfish ecotypes - Data

description: Raw data used for paper 'Intraspecific brain size variation between coexisting sunfish ecotypes'
DOI: 10.5061/dryad.76fk344/1
title: S1

description: Data for the paper.
DOI: 10.5061/dryad.83nj1.2/10.2
title: Gridded urban population in 2015 at 15 arc-seconds

description: Colombia urban population in 2015 obtained by multiplying WorldPop gridded population by urban extent binary raster file. the file in BIL format at a resolution of 15 arc-seconds.
DOI: 10.5061/dryad.83nj1.2/11.2
title: Gridded travel time at 30 arc-seconds

description: Colombia travel time (in minutes) to the nearest city of 50,000 or more population in year 2000. The file is in BIL format, at a resolution of 30 arc-seconds.
DOI: 10.5061/dryad.83nj1.2/12.2
title: Gridded gross cell product at 2.5 arc-minutes

description: Per capita gross cell product in 2005 $US for Colombia cropped to match all other raster outputs. The file is in BIL format, at a resolution of 2.5 arc-minutes (resampled from the original 60 arc-minutes raster file).
DOI: 10.5061/dryad.83nj1.2/13.2
title: Weekly Zika cases

description: Weekly Zika cases at municipality, department and national levels (in .csv format).
DOI: 10.5061/dryad.83nj1.2/14.2
title: Weekly covariates aggregated at municipality level

description: Time series of weekly covariates aggregated at municipality level. This .zip file contains eight tables (in .csv format) of time series for aegypti population, maximum temperature, mean temperature, minimum temperature, NDVI MODIS Aqua, NDIV MODIS Terra, precipitation and relative humidity.
DOI: 10.5061/dryad.83nj1.2/15.2
title: Weekly covariates aggregated at department level

description: Time series of weekly covariates aggregated at department level. This .zip file contains eight tables (in .csv format) of time series for aegypti population, maximum temperature, mean temperature, minimum temperature, NDVI MODIS Aqua, NDIV MODIS Terra, precipitation and relative humidity.
DOI: 10.5061/dryad.83nj1.2/8.2
title: Gridded population in 2015 at 3 arc-seconds

description: Colombia population in 2015. The file is in BIL format, at a resolution of 3 arc-seconds.
DOI: 10.5061/dryad.83nj1.2/9.2
title: Gridded births in 2015 at 3 arc-seconds

description: Colombia births in 2015. The file is in BIL format, at a resolution of 3 arc-seconds.
DOI: 10.5061/dryad.b5s2hn4/2
title: Mapping to chromosome

description: Map positions for the reference genome reported in Velasco et al. 2010 are from v1.0 pseudo haplotype (https://www.rosaceae.org)
DOI: 10.5061/dryad.c5v81v1/1
title: Chaetodon Territiorial Ecolology Data Along a Depth Gradient

description: Depth stratified data of the size, position and resource availability of territories, and territorial maintenance behaviours of two species of Chaetodon butterfly fishes.
DOI: 10.5061/dryad.g69c080/6
title: Raw data sustained swimming

description: The raw data for sustained swimming across trials and flow speeds
DOI: 10.5061/dryad.g69c080/7
title: proucrit(2)

description: Proportional time fish spent swimming, including projected area values
DOI: 10.5061/dryad.gv33qc2/1
title: Architecture of seedling root systems of seven legumes species

description: Root system architectural data about seven legumes species growing in four nutrient supply treatment and measured in four time cuts.
DOI: 10.5061/dryad.h1r1pg7/1
title: Maxent_data

description: This zipped file contains the ASCII files representing the environmental factors used to make the Maxent model and map.
DOI: 10.5061/dryad.h1r1pg7/2
title: Anopheles_c2001

description: This CSV file contains the combined Anopheles mosquito coordinates, where mosquitoes were collected in Tanzania between 1999-2003, for the building of the Maxent model. These data, combined with the ASCII environmental files, will reproduce the Maxent model and map when used as input in the Maxent software.
DOI: 10.5061/dryad.h3390h5/3
title: Table S2

description: Furnariides local assemblages obtained from the literature.
DOI: 10.5061/dryad.h3390h5/4
title: Table S3

description: GenBank Accession numbers of the sequences included in the Furnariides phylogeny
DOI: 10.5061/dryad.j886dg0/1
title: R Script to reproduce analyses

description: This file allows to reproduce analyses presented in the paper using the three datasets made available alongside it.
DOI: 10.5061/dryad.jc77s36/1
title: Alignment, ILD, Partitionfinder, time calibrated phyogeny, RASP

description: S1. Alignment of three plastid regions (trnL-F, trnG-R, rpl16, matK) of 48 taxa of Cyatheales, with simple indel coding (SIC).
S2. Results of Partition Heterogeneity Test (ILD; 1000 rep) 
S3. Likelihood settings under 3 substitution models found under PARTITIONFINDER.
S4. Calibrated phylogeny found in BEAST.
S5. RASP results of S-DIVA
DOI: 10.5061/dryad.m9c8tn8/1
title: e-Supplemental_ID_NEUROLOGY_2018_893248

description: e-Supplemental of manuscript titled: Blood-Brain Barrier Impairment and Hypoperfusion are linked in Cerebral Small Vessel Disease by Wong et al.
DOI: 10.5061/dryad.n726pq6/1
title: Habitat Quality Maps for caribou movement models

description: Archive of 24 tifs of seasonal (winter&summef) habitat quality maps for 12 management/climate change scenarios, as detailed in the manuscript and supplementary material.
DOI: 10.6084/m9.figshare.20483686
title: Off-Policy Confidence Interval Estimation with Confounded Markov Decision Process

description: <b>This article is concerned with constructing a confidence interval for a target policy’s value offline based on a pre-collected observational data in infinite horizon settings. Most of the existing works assume no unmeasured variables exist that confound the observed actions. This assumption, however, is likely to be violated in real applications such as healthcare and technological industries. In this article, we show that with some auxiliary variables that mediate the effect of actions on the system dynamics, the target policy’s value is identifiable in a confounded Markov decision process. Based on this result, we develop an efficient off-policy value estimator that is robust to potential model misspecification and provide rigorous uncertainty quantification. Our method is justified by theoretical results, simulated and real datasets obtained from ridesharing companies. A Python implementation of the proposed procedure is available at</b>https://github.com/Mamba413/cope.
DOI: 10.6084/m9.figshare.20483686.v1
title: Off-Policy Confidence Interval Estimation with Confounded Markov Decision Process

description: <b>This article is concerned with constructing a confidence interval for a target policy’s value offline based on a pre-collected observational data in infinite horizon settings. Most of the existing works assume no unmeasured variables exist that confound the observed actions. This assumption, however, is likely to be violated in real applications such as healthcare and technological industries. In this article, we show that with some auxiliary variables that mediate the effect of actions on the system dynamics, the target policy’s value is identifiable in a confounded Markov decision process. Based on this result, we develop an efficient off-policy value estimator that is robust to potential model misspecification and provide rigorous uncertainty quantification. Our method is justified by theoretical results, simulated and real datasets obtained from ridesharing companies. A Python implementation of the proposed procedure is available at</b>https://github.com/Mamba413/cope.
DOI: 10.6084/m9.figshare.14715134.v2
title: Additional file 20 of Highly recurrent CBS epimutations in gastric cancer CpG island methylator phenotypes and inflammation

description: Additional file 20: Table S19. Overlap of negatively correlated genes to CBS in various TCGA cancers (q-value &lt; 0.05) with MSigDB hallmark gene sets (q-value &lt; 0.01).
DOI: 10.6084/m9.figshare.14715073
title: Additional file 19 of Joint contributions of the gut microbiota and host genetics to feed efficiency in chickens

description: Additional file 18: Table S10. Detailed information on the SNPs associated with the abundance of cecal Megasphaera.
DOI: 10.6084/m9.figshare.14715079
title: Additional file 21 of Joint contributions of the gut microbiota and host genetics to feed efficiency in chickens

description: Additional file 20: Table S11. Spearman’s correlation between cecal Lactobacillus and other microbial genera.
DOI: 10.6084/m9.figshare.7900967.v1
title: Additional file 3: of Characterization of molecular diversity and genome-wide association study of stripe rust resistance at the adult plant stage in Northern Chinese wheat landraces

description: Information of the 7899 DArT-seq markers and SSR markers used in this study. (XLSX 1270â kb)
DOI: 10.6084/m9.figshare.7900976
title: Additional file 5: of Characterization of molecular diversity and genome-wide association study of stripe rust resistance at the adult plant stage in Northern Chinese wheat landraces

description: Distribution of resistance-associated alleles of significant markers (Pâ &lt;â 0.001) in the diversity panel. (XLSX 23â kb)
DOI: 10.6084/m9.figshare.13142488
title: Additional file 6 of Genome-wide study of pineapple (Ananas comosus L.) bHLH transcription factors indicates that cryptochrome-interacting bHLH2 (AcCIB2) participates in flowering time regulation and abiotic stress response

description: Additional file 6: Table S6. The expression profile of pineapple bHLH genes in different tissue and developmental stages. Details of the samples are: sepal Se1–Se4, gynoecium Gy1- Gy7, ovule Ov1–Ov7, petal Pe1–Pe3, stamen St1–St6, fruit ‘Fr_S1–Fr_S7’, root ‘Ro’, leaf ‘Le’, and flower ‘Fl’ where ‘S’ is the abbreviation for ‘stage.
DOI: 10.6084/m9.figshare.7900955.v1
title: Additional file 1: of Characterization of molecular diversity and genome-wide association study of stripe rust resistance at the adult plant stage in Northern Chinese wheat landraces

description: Ninety-three Northern Chinese wheat landrace accessions used in this study and AS_NO, ZM_NO, geographic origins, wheat plant zone in China, subpopulation (Q) and the phenotype of stripe rust (DS and IT). (XLSX 20â kb)
DOI: 10.6084/m9.figshare.7900979.v1
title: MOESM2 of The REal Life EVidence AssessmeNt Tool (RELEVANT): development of a novel quality assurance asset to rate observational comparative effectiveness research studies

description: Additional file 2. This maps the quality recommendations within the primary reference papers Berger et al and Roche et al that resulted in an initial 43-item checklist.
DOI: 10.6084/m9.figshare.21532476
title: support information-1110.docx

description: Supporting information.
DOI: 10.6084/m9.figshare.7900955
title: Additional file 1: of Characterization of molecular diversity and genome-wide association study of stripe rust resistance at the adult plant stage in Northern Chinese wheat landraces

description: Ninety-three Northern Chinese wheat landrace accessions used in this study and AS_NO, ZM_NO, geographic origins, wheat plant zone in China, subpopulation (Q) and the phenotype of stripe rust (DS and IT). (XLSX 20â kb)
DOI: 10.6084/m9.figshare.7900967
title: Additional file 3: of Characterization of molecular diversity and genome-wide association study of stripe rust resistance at the adult plant stage in Northern Chinese wheat landraces

description: Information of the 7899 DArT-seq markers and SSR markers used in this study. (XLSX 1270â kb)
DOI: 10.6084/m9.figshare.7900976.v1
title: Additional file 5: of Characterization of molecular diversity and genome-wide association study of stripe rust resistance at the adult plant stage in Northern Chinese wheat landraces

description: Distribution of resistance-associated alleles of significant markers (Pâ &lt;â 0.001) in the diversity panel. (XLSX 23â kb)
DOI: 10.6084/m9.figshare.7900979
title: MOESM2 of The REal Life EVidence AssessmeNt Tool (RELEVANT): development of a novel quality assurance asset to rate observational comparative effectiveness research studies

description: Additional file 2. This maps the quality recommendations within the primary reference papers Berger et al and Roche et al that resulted in an initial 43-item checklist.
DOI: 10.6084/m9.figshare.7900985.v1
title: Additional file 6: of Characterization of molecular diversity and genome-wide association study of stripe rust resistance at the adult plant stage in Northern Chinese wheat landraces

description: The details of QTL and Yr genes located on the integrated map. (XLSX 30â kb)
DOI: 10.6084/m9.figshare.7900985
title: Additional file 6: of Characterization of molecular diversity and genome-wide association study of stripe rust resistance at the adult plant stage in Northern Chinese wheat landraces

description: The details of QTL and Yr genes located on the integrated map. (XLSX 30â kb)
DOI: 10.6084/m9.figshare.19435273.v1
title: Yield of tomato from Regulation of dynamics and densities of whitefly <i>Bemisia tabaci</i> by agricultural landscapes in south China

description: Differences in yields of tomato were compared among agriculture landscape types by Least Significant Difference. The significance threshold was P=0.05 in all tests. Data analyses were performed using SPSS 20.0.
DOI: 10.6084/m9.figshare.19435273
title: Yield of tomato from Regulation of dynamics and densities of whitefly <i>Bemisia tabaci</i> by agricultural landscapes in south China

description: Differences in yields of tomato were compared among agriculture landscape types by Least Significant Difference. The significance threshold was P=0.05 in all tests. Data analyses were performed using SPSS 20.0.
DOI: 10.6084/m9.figshare.19435276
title: Metadata, Covariance matrix of PCA from Regulation of dynamics and densities of whitefly <i>Bemisia tabaci</i> by agricultural landscapes in south China

description: The 12 agriculture landscapes located in the surroundings of Kunming, south China (24°42'45''N-25°22'43''N, 102°22'18''E-103°10'90''E). it was selected by use of Google Earth Profession and ﬁeld inspections (ground-truthing) once a month during the tomato growing seasons in 2018 and 2019. The cover types in each landscape were divided into 10 types according to vegetation type, human factor interference and land type characteristics. A Principal Components Analysis (PCA) was performed to reduce the dimensions of the landscape data. These ten land cover types were divided for the PCA analysis, the land cover type with the largest area in one landscape and the absolute value of first principal component greater than 0.9 was selected as the landscape type. Principal component axes were extracted using correlations among variables, and the resulting factors were not rotated.
DOI: 10.6084/m9.figshare.13142491
title: Additional file 7 of Genome-wide study of pineapple (Ananas comosus L.) bHLH transcription factors indicates that cryptochrome-interacting bHLH2 (AcCIB2) participates in flowering time regulation and abiotic stress response

description: Additional file 7: Table S7. List of primers used in the present study.
DOI: 10.6084/m9.figshare.14715070
title: Additional file 18 of Joint contributions of the gut microbiota and host genetics to feed efficiency in chickens

description: Additional file 17: Table S9. Detailed information on the SNPs associated with the abundance of cecal Parabacteroides.