cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive111286.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0103012.10fu
title: SH0103012.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive111287.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive111287.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0103013.10fu
title: SH0103013.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive111288.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0103014.10fu
title: SH0103014.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive111288.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive111289.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0103015.10fu
title: SH0103015.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5517/cc4f9sm
title: CCDC 131960: Experimental Crystal Structure Determination

description: Related Article: Qi Li, T.C.W.Mak|1998|Acta Crystallogr.,Sect.B:Struct.Sci.|54|180|doi:10.1107/S0108768196014498
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4f9vp
title: CCDC 131962: Experimental Crystal Structure Determination

description: Related Article: Qi Li, T.C.W.Mak|1998|Acta Crystallogr.,Sect.B:Struct.Sci.|54|180|doi:10.1107/S0108768196014498
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3vsj7
title: CCDC 115119: Experimental Crystal Structure Determination

description: Related Article: A.Paulo, K.R.Reddy, A.Domingos, I.Santos|1998|Inorg.Chem.|37|6807|doi:10.1021/ic980422y
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3vsk8
title: CCDC 115120: Experimental Crystal Structure Determination

description: Related Article: A.Paulo, K.R.Reddy, A.Domingos, I.Santos|1998|Inorg.Chem.|37|6807|doi:10.1021/ic980422y
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4l4sm
title: CCDC 136610: Experimental Crystal Structure Determination

description: Related Article: A.Paulo, K.R.Reddy, A.Domingos, I.Santos|1998|Inorg.Chem.|37|6807|doi:10.1021/ic980422y
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3d47v
title: CCDC 101036: Experimental Crystal Structure Determination

description: Related Article: Zhong-lin Lu, A.Mayr, Kung-Kai Cheung|1999|Inorg.Chim.Acta|284|205|doi:10.1016/S0020-1693(98)00288-6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3xv50
title: CCDC 117092: Experimental Crystal Structure Determination

description: Related Article: Zhong-lin Lu, A.Mayr, Kung-Kai Cheung|1999|Inorg.Chim.Acta|284|205|doi:10.1016/S0020-1693(98)00288-6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3xv61
title: CCDC 117093: Experimental Crystal Structure Determination

description: Related Article: Zhong-lin Lu, A.Mayr, Kung-Kai Cheung|1999|Inorg.Chim.Acta|284|205|doi:10.1016/S0020-1693(98)00288-6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4l8yx
title: CCDC 136739: Experimental Crystal Structure Determination

description: Related Article: Yousheng Zhang, S.R.Breeze, Suning Wang, J.E.Greedan, N.P.Raju, Lijuan Li|1999|Can.J.Chem.|77|1424|doi:10.1139/cjc-77-8-1424
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4l8zy
title: CCDC 136740: Experimental Crystal Structure Determination

description: Related Article: Yousheng Zhang, S.R.Breeze, Suning Wang, J.E.Greedan, N.P.Raju, Lijuan Li|1999|Can.J.Chem.|77|1424|doi:10.1139/cjc-77-8-1424
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.17301353
title: Raw data for SWBio RNA-seq computer practical

description: I used seqtk_sample (Galaxy Version 1.5+galaxy0) to downsample 2,000,000 pairs of reads from each of two accessions from the Sequence Read Archive (SRA):



SRR1582666 (treatment = "without")

SRR1582659 (treatment = "M23_15")


Both datasets come from this study:

Kim, S., Cho, Y. J., Song, E. S., Lee, S. H., Kim, J. G., & Kang, L. W. (2016). Time-resolved pathogenic gene expression analysis of the plant pathogen Xanthomonas oryzae pv. oryzae. BMC Genomics, 17, 345. https://doi.org/10.1186/s12864-016-2657-7.

And the data are also used in this study:

Kim, S., Jang, W. E., Park, J., Kim, M. S., Kim, J. G., & Kang, L. W. (2021). Combined Analysis of the Time-Resolved Transcriptome and Proteome of Plant Pathogen Xanthomonas oryzae pv. oryzae. Frontiers in Microbiology, 12, 664857. https://doi.org/10.3389/fmicb.2021.664857.
DOI: 10.5281/zenodo.17311933
title: Raw data for SWBio RNA-seq computer practical

description: I used seqtk_sample (Galaxy Version 1.5+galaxy0) to downsample 2,000,000 pairs of reads from each of two accessions from the Sequence Read Archive (SRA):



SRR1582666 (treatment = "without")

SRR1582659 (treatment = "M23_15")


Both datasets come from this study:

Kim, S., Cho, Y. J., Song, E. S., Lee, S. H., Kim, J. G., & Kang, L. W. (2016). Time-resolved pathogenic gene expression analysis of the plant pathogen Xanthomonas oryzae pv. oryzae. BMC Genomics, 17, 345. https://doi.org/10.1186/s12864-016-2657-7.

And the data are also used in this study:

Kim, S., Jang, W. E., Park, J., Kim, M. S., Kim, J. G., & Kang, L. W. (2021). Combined Analysis of the Time-Resolved Transcriptome and Proteome of Plant Pathogen Xanthomonas oryzae pv. oryzae. Frontiers in Microbiology, 12, 664857. https://doi.org/10.3389/fmicb.2021.664857.
DOI: 10.5517/cc4l0rg
title: CCDC 136485: Experimental Crystal Structure Determination

description: Related Article: Lin Xu, Yaqiu Sun, Enbo Wang, Enhong Shen, Zhongri Liu, Changwen Hu, Yan Xing, Yonghua Lin, Hengqing Jia|1999|J.Solid State Chem.|146|533|doi:10.1006/jssc.1999.8368
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4l900
title: CCDC 136741: Experimental Crystal Structure Determination

description: Related Article: Yousheng Zhang, S.R.Breeze, Suning Wang, J.E.Greedan, N.P.Raju, Lijuan Li|1999|Can.J.Chem.|77|1424|doi:10.1139/cjc-77-8-1424
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3frhr
title: CCDC 102594: Experimental Crystal Structure Determination

description: Related Article: M.Schneider, B.Neumann, H.-G.Stammler, P.Jutzi|1999|Monatsh.Chem.|130|33|doi:10.1007/PL00010173
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3frjs
title: CCDC 102595: Experimental Crystal Structure Determination

description: Related Article: M.Schneider, B.Neumann, H.-G.Stammler, P.Jutzi|1999|Monatsh.Chem.|130|33|doi:10.1007/PL00010173
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3frkt
title: CCDC 102596: Experimental Crystal Structure Determination

description: Related Article: M.Schneider, B.Neumann, H.-G.Stammler, P.Jutzi|1999|Monatsh.Chem.|130|33|doi:10.1007/PL00010173
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4knz9
title: CCDC 136151: Experimental Crystal Structure Determination

description: Related Article: H.Bock, H.Schodel, T.T.H.Van, R.Dienelt, M.Gluth|1998|J.Prakt.Chem.-Chem.-Zeitung|340|722|doi:10.1002/prac.19983400804
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4kp0c
title: CCDC 136152: Experimental Crystal Structure Determination

description: Related Article: H.Bock, H.Schodel, T.T.H.Van, R.Dienelt, M.Gluth|1998|J.Prakt.Chem.-Chem.-Zeitung|340|722|doi:10.1002/prac.19983400804
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4kp1d
title: CCDC 136153: Experimental Crystal Structure Determination

description: Related Article: H.Bock, H.Schodel, T.T.H.Van, R.Dienelt, M.Gluth|1998|J.Prakt.Chem.-Chem.-Zeitung|340|722|doi:10.1002/prac.19983400804
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4krv8
title: CCDC 136240: Experimental Crystal Structure Determination

description: Related Article: H.Bock, H.Schodel, T.T.H.Van, R.Dienelt, M.Gluth|1998|J.Prakt.Chem.-Chem.-Zeitung|340|722|doi:10.1002/prac.19983400804
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4858t
title: CCDC 127015: Experimental Crystal Structure Determination

description: Related Article: S.E.Mallakpour, H.Kolshorn, D.Schollmeyer, R.Stadler|1997|Macromol.Chem.Phys.|198|251|doi:10.1002/macp.1997.021980203
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4jvyf
title: CCDC 135375: Experimental Crystal Structure Determination

description: Related Article: Linfeng Chen, F.A.Cotton|1998|J.Mol.Struct.|470|161|doi:10.1016/S0022-2860(98)00478-5
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3rg3d
title: CCDC 111913: Experimental Crystal Structure Determination

description: Related Article: A.L.Llamas-Saiz, C.Foces-Foces, I.Sobrados, N.Jagerovic, J.Elguero|1999|J.Mol.Struct.|478|81|doi:10.1016/S0022-2860(98)00658-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4jvzg
title: CCDC 135376: Experimental Crystal Structure Determination

description: Related Article: Linfeng Chen, F.A.Cotton|1998|J.Mol.Struct.|470|161|doi:10.1016/S0022-2860(98)00478-5
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3h9mh
title: CCDC 104086: Experimental Crystal Structure Determination

description: Related Article: A.Hilgeroth, U.Baumeister, F.W.Heinemann|1999|J.Mol.Struct.|474|267|doi:10.1016/S0022-2860(98)00579-1
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3rg4f
title: CCDC 111914: Experimental Crystal Structure Determination

description: Related Article: A.L.Llamas-Saiz, C.Foces-Foces, I.Sobrados, N.Jagerovic, J.Elguero|1999|J.Mol.Struct.|478|81|doi:10.1016/S0022-2860(98)00658-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3h984
title: CCDC 104075: Experimental Crystal Structure Determination

description: Related Article: A.Hilgeroth, U.Baumeister, F.W.Heinemann|1999|J.Mol.Struct.|474|267|doi:10.1016/S0022-2860(98)00579-1
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3h973
title: CCDC 104074: Experimental Crystal Structure Determination

description: Related Article: A.Hilgeroth, U.Baumeister, F.W.Heinemann|1999|J.Mol.Struct.|474|267|doi:10.1016/S0022-2860(98)00579-1
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.