cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/f74q7s25
title: Microbial and environmental dataset from Crocker Reef, Florida Keys, 2014-2015

description: Crocker Reef was the site of an integrated reefscape characterization effort focused on calcification and related biogeochemical processes as part of the USGS Coral Reef Ecosystem Study (CREST) project. This effort included two intensive seasonal sampling trips to capture summer (July 8 to 17, 2014) and winter (January 29 to February 5, 2015) conditions. This data release represents water column microbial and environmental data collected for use as metadata in future publications examining reef metabolic processes via metagenomes derived from water samples and fine-scale temporal and spatial carbonate chemistry measurements. Microbial data are total bacterial counts per milliliter seawater, total viral counts per milliliter of seawater, and plate counts using TCBS agar of Vibrio (bacteria) per milliliter of seawater. Environmental data are water temperature, salinity, dissolved oxygen, and pH. For further information regarding data collection and/or processing methods refer to USGS Open-File Report 2015-1203 (https://doi.org/10.3133/ofr20151203).
DOI: 10.5066/f72z13mk
title: EAARL-B Topography-Suncook River, New Hampshire, 5-6 November 2013: Seamless (Bare Earth and Submerged)

description: This point-cloud dataset, prepared by the U.S. Geological Survey St. Petersburg Coastal and Marine Science Center, provides lidar-derived seamless (bare earth and submerged) topography for a portion of the Suncook River in New Hampshire. Elevation measurements were acquired by the second-generation Experimental Advanced Airborne Research Lidar (EAARL-B) on November 5 and 6, 2013, in cooperation with the New Hampshire Geological Survey. The authors acknowledge Emily Klipp, Richard Mitchell, Chris Pali, Virgil Rabine, Rudy Troche, and Wayne Wright for lidar acquisition and processing support.
DOI: 10.5066/f7445ksg
title: Benthic Foraminiferal Data from Sedimentary Cores Collected in the Grand Bay (Mississippi) and Dauphin Island (Alabama) Salt Marshes

description: Microfossil (benthic foraminifera) data from coastal areas were collected from state and federally managed lands within the Grand Bay National Estuarine Research Reserve and Grand Bay National Wildlife Refuge, Grand Bay, Mississippi/Alabama; federally managed lands of Bon Secour National Wildlife Refuge on Cedar Island and Little Dauphin Island, Alabama; and municipally managed land around Dauphin Island, Alabama. Samples were analyzed and quantified for foraminiferal census in order to document changes to the coastal wetlands, estuarine environments, and to aid in paleoenvironmental reconstruction. These data provide a baseline dataset for use in future wetland change descriptive and predictive studies and assessments. The data presented here were collected as part of the U.S. Geological Survey's Sea-level and Storm Impacts on Estuarine Environments and Shorelines (SSIEES) project, Barrier Island Evolution Research (BIER) project, and National Fish and Wildlife Foundation-funded Alabama Barrier Island Restoration Feasibility Study (a collaborative study between the U.S. Army Corp of Engineers, Mobile District; the State of Alabama; and the USGS). These projects aim to assess ecological and societal vulnerability that results from long- and short-term physical changes to barrier islands and coastal wetlands. Two sampling surveys were conducted between 2014 and 2015: 14CCT01 (15-19 September 2014; 2014-323-FA), and 15BIM09 (18-20 August 2015; 2015-322-FA). During those two trips, seven Russian peat auger cores were taken from marsh locations. Three cores from Dauphin Island were subsampled and stained with rose Bengal (rB) in the field to indicate life. Four further cores from Dauphin Island and Grand Bay were not stained. At the St. Petersburg Coastal and Marine Science Center all cores were subsampled resulting in a total of 74 subsamples. Samples were processed in the laboratory to four size fractions (63-125 micrometers, 125-250 micrometers, 250-850 micrometers, and greater than 850 micrometers), of which the 125-250 micrometers and 250-850 micrometers fractions were picked at equal proportions of total sample and reported combined (125-850 micrometers). For additional information regarding foraminiferal collection and/or processing methods, refer to Ellis and others (2017). Further data collected on and surrounding Dauphin Island is presented in Ellis and others (2017) and Ellis and others (2018).
DOI: 10.5066/f73n21h0
title: ATRIS Seafloor Images-West Turtle Shoal Patch Reef, Rawa Patch Reef, Dustan Rocks Patch Reef, and Thor Patch Reef, Florida, 2011

description: The U.S. Geological Survey St. Petersburg Coastal and Marine Science Center developed the Along-Track Reef Imaging System (ATRIS) in order to capture high-resolution, geo-located images of the seafloor. The images in this data release were collected September 29-30, 2011 at West Turtle Shoal, Rawa, Dustan Rocks, and Thor patch reefs near Marathon, Florida. The transects below show the path of image collection. For further information regarding data collection methods, refer to: Zawada, D.Z., Ruzicka, R., and Colella. M.A., 2015, A comparison between boat-based and diver-based methods for quantifying coral bleaching: Journal of Experimental Marine Biology and Ecology, v. 467, p. 39-44, https://doi.org/10.1016/j.jembe.2015.02.017.
DOI: 10.5066/f73t9f86
title: EAARL-B Submerged Topography-Saint Croix, U.S. Virgin Islands, 2014

description: This mosaic, prepared by the U.S. Geological Survey St. Petersburg Coastal and Marine Science Center, provides lidar-derived submerged topography for a portion of the submerged environs of Saint Croix, U.S. Virgin Islands. Elevation measurements were acquired by the second-generation Experimental Advanced Airborne Research Lidar (EAARL-B) on March 11, 19, and 21, 2014, in cooperation with the National Oceanic and Atmospheric Administration Coral Reef Conservation Program.
DOI: 10.5066/f7154f67
title: Post-Hurricane Matthew coastal oblique aerial photographs collected Port St. Lucie, Florida, to Kitty Hawk, North Carolina, October 13-15, 2016

description: The U.S. Geological Survey (USGS), as part of the National Assessment of Coastal Change Hazards (NACCH) conducts baseline and storm-response photography missions to document and understand the changes in the vulnerability of the Nation's coasts to extreme storms and longer-term processes related to sediment supply and sea-level rise. On October 13?15, 2016, the USGS's NACCH project conducted an oblique aerial photographic survey from Port St. Lucie, Florida, to Kitty Hawk, North Carolina, aboard a Cessna 182 aircraft at an altitude of 500 feet (152 meters) and approximately 1,200 feet (366 meters) offshore in response to impacts from Hurricane Matthew. Low resolution versions of these images are available in the interactive map viewer on the Hurricane Matthew Storm Response Pre- and Post-Storm Oblique Aerial Photography page.
DOI: 10.5066/f74x56n2
title: EAARL Coastal Topography-Texas, Post-Hurricane Ike, 2008

description: These datasets, prepared by the U.S. Geological Survey St. Petersburg Coastal and Marine Science Center, provide lidar-derived first-surface and bare-earth topography for a portion of the Texas coastline. Elevation measurements were acquired by the Experimental Advanced Airborne Research Lidar (EAARL) on September 17th, 2008, following Hurricane Ike landfall.
DOI: 10.5066/f71g0kkd
title: Sediment Data for Samples Collected in 2015, 2016, and 2017 from Coastal Louisiana

description: This data release serves as an archive of sediment data collected in 2015, 2016, and 2017 from coastal Louisiana. In 2015 and 2016, sediment grab samples (N=874) were collected coast-wide along shore-perpendicular transects that included back-barrier, emergent (beach and barrier island), shoreface, and nearshore environments. Sample locations were selected to re-occupy as closely as possible locations previously sampled in 2008 (U.S. Geological Survey [USGS] Open-File Report 2013-1083). The 2008 and 2015-2016 datasets were collected under the Barrier Island Coastal Monitoring (BICM) program, which is an ongoing collaboration between the State of Louisiana Coastal Protection and Restoration Authority (CPRA), the University of New Orleans (UNO), and the USGS. In 2017, additional grab samples (N=77) were collected along transects from West Belle Pass to Caminada Pass as part of the CPRA Caminada Headland Beach and Dune Restoration project (CPRA project BA-0045). The 2015, 2016, and 2017 sediment samples were collected by personnel from UNO-PIES and provided to the USGS St. Petersburg and Coastal Marine Science Center (SPCMSC) sediment laboratory. Textural characteristics were analyzed using a Coulter LS 200 particle-size analyzer. Following SPCMSC data management and archiving protocols, the samples were assigned a USGS field activity number (FAN) 2015-301-CNT.
DOI: 10.5066/f71g0jdr
title: Baseline Coastal Oblique Aerial Photographs Collected from Horseshoe Beach, Florida, to East Cape, Florida, May 19-20, 2010

description: The U.S. Geological Survey (USGS), as part of the National Assessment of Coastal Change Hazards project conducts baseline and storm-response photography missions to document and understand the changes in the vulnerability of the Nation's coasts to extreme storms and longer-term processes related to sediment supply and sea-level rise. On May 19?20, 2010, the USGS's NACCH project conducted an oblique aerial photographic survey from Horseshoe Beach, Florida, to East Cape, Florida, aboard a Piper Navajo Chieftain aircraft at an altitude of 500 feet (152 meters) and approximately 1,200 feet (366 meters) offshore to collect baseline data. Low resolution versions of these images are available in the interactive map viewer on the Baseline Oblique Aerial Photography page.
DOI: 10.5066/f74q7s3m
title: EAARL Coastal Topography-Dauphin Island, 2010

description: These datasets, prepared by the U.S. Geological Survey St. Petersburg Coastal and Marine Science Center, provide lidar-derived first-surface and bare-earth topography for Dauphin Island, Alabama. Elevation measurements were acquired by the Experimental Advanced Airborne Research Lidar (EAARL) on July 24, 2010, one day before remnants from the dissipated Tropical Storm Bonnie came ashore.
DOI: 10.5066/f7028pmp
title: Shorelines Extracted from Landsat Imagery: Dauphin Island, Alabama

description: The deployment of Landsat and other earth-observing satellites within the last few decades has provided an opportunity to observe barrier islands at frequent intervals, often many times a year. A variable of persistent interest as a metric for coastal erosion or change is the shoreline. Shorelines derived from imagery have value to resolve coastal changes. This data release includes shoreline positions extracted from Landsat satellite imagery. The shorelines are released in shapefiles with both line and polygon feature types to support a variety of user needs. The data (lines or polygons) are released as individual shapefiles for each sample date and are also released as combined shapefiles with all dates, again to provide users of these data with more options for selecting data of interest. The methods used to identify the shorelines are presented in Guy (2015).
DOI: 10.5066/f73j3b5k
title: Sedimentary Data from the Coastal Marshes Fringing the Lower Waccasassa River, Northwest Florida

description: The Waccasassa River is located in a small watershed situated along the middle section of the low-gradient, low-energy, sediment-starved Big Bend coast in west central Florida. The river mouth empties into the head of the shallow, microtidal Waccasassa Bay and the Gulf of Mexico. The lower end of the river and the surrounding coastline are dominated by coast-parallel Juncus roemerianus salt marshes up to 1.5 km wide. The sediment cover is thin, with the marsh surface typically less than 2.5m above the limestone bedrock. Scientists from the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center investigated the sedimentary and geochemical properties of the saltmarsh sediments in order to increase understanding of the region's environmental history and the ongoing soil chemical processes. To this end, they obtained long and short sediment cores and surface samples from three sites along the margins of the river during field trips in December 2014 and February, 2015. This data release details the sedimentary and chemical properties of these sediments. All ten cores were subjected to 2 cm-resolution analysis by a hand-held XRF (pXRF) to determine elemental concentrations, loss-on-ignition (LOI) was performed on eight long cores at 1 cm-resolution, and sediment physical parameters were quantified for eight short cores and all surface samples. Thirteen subsamples, extracted from seven cores at selected stratigraphic depths were dated by radiocarbon analysis, and centennial-scale dating was provided by short-lived radioisotope analysis conducted on two short cores. Grain size analysis was conducted on four cores, and pollen analysis on one core. These data are used to quantify current conditions in the marsh sediments and provide a history of local environmental change for the last three millennia. This data release archives the data, downloadable as Excel and CSV spreadsheets, and PDF and JPEG files.
DOI: 10.5066/f75d8pxq
title: EAARL-B Topography-Big Thicket National Preserve: Lower Neches River Corridor Unit, Texas, 2014

description: These mosaics, prepared by the U.S. Geological Survey St. Petersburg Coastal and Marine Science Center, provide lidar-derived first-surface and bare-earth topography for the Lower Neches River Corridor Unit of Big Thicket National Preserve in Texas. Elevation measurements were acquired by the second-generation Experimental Advanced Airborne Research Lidar (EAARL-B) on January 11, 15, 17, 18, 19, 21, 23, 25, 27, and 29, 2014, in cooperation with the National Park Service - Gulf Coast Network.
DOI: 10.5066/f7513wbw
title: Coastal Topography-Fire Island, New York, 07 May 2012

description: Lidar-derived bare-earth topography Digital Elevation Model (DEM) mosaic and classified point-cloud datasets for Fire Island, New York, were produced from remotely sensed, geographically referenced elevation measurements collected on May 7, 2012.
DOI: 10.5066/f78050qd
title: Shorelines Derived From Continuous Video-Imagery at the NASA-Kennedy Space Center, Florida From August 2011 to July 2012

description: In 2010, a video camera was installed near the northern boundary of the National Aeronautics and Space Administration-Kennedy Space Center (NASA-KSC) property along the Atlantic coast of Florida. A region extending 1 kilometer (km) to the south of the camera was established as the region of interest for the video image observations. During every daylight hour of camera operation from August 8, 2011 to July 24, 2012, a time exposure (timex) image product was created by averaging pixel color intensity for all frames collected during a 10-minute video at 2 frames per second (hertz, Hz). One timex image per day was used for analysis. The timex selected for each day was the product that was created when the tide level was closest to the Mean High Water (MHW) at the study site. Based on observed water levels from a nearby National Oceanic and Atmospheric Administration (NOAA) station, the MHW was determined to be 0.23 meters (m). The shoreline was manually identified as the wet-dry line within the region of interest of each available timex product. However, timex products were not available for about half of this timeframe due to camera malfunctions, adverse weather conditions (for example, fog), and/or a lack of daylight during the timing of MHW. Please carefully review the metadata for more information. This dataset is referenced in an associated publication that analyzed shoreline variability over daily to decadal timescales at NASA-KSC to quantify and compare variability and associated drivers at each timescale. For more information, refer to Conlin and others (2019). Conlin, M.P., Adams, P.N., Plant, N.G., Jaeger, J.M., and Mackenzie, R., 2019, Daily to decadal variability of beach morphology at NASA-Kennedy Space Center-storm influences across timescales, in Wang, P., Rosati, J.D., and Vallee, M., eds., Coastal sediments 2019-Proceedings of the 9th International Conference on Coastal Sediments, Tampa-St. Petersburg, Florida, U.S.A., 27-31 May 2019: [New Jersey], World Scientific Publishing Company, p. 2268-2281, https://doi.org/10.1142/9789811204487_0194.
DOI: 10.5066/f76q1wg4
title: Radon-222 and Water Column Data Related to Submarine Groundwater Discharge Along the Western Margin of Indian River Lagoon, Florida-September 2017 and November 2017

description: Indian River Lagoon (IRL) is one of the most biologically diverse estuarine systems in the continental United States, extending 200 kilometers (km) along the Atlantic coast of central Florida. The lagoon is characterized by shallow, brackish waters with significant human development along both shores and a width that varies between 0.5-9.0 km. Scientists from the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center, working in collaboration with the St. Johns River Water Management District, mapped surface water radon-222 (radon-in-water) and basic physical water column properties (for example, salinity and temperature) to examine submarine groundwater discharge at two locations, Eau Gallie North and Riverwalk Park, along the western shore of IRL. Eau Gallie North is near the central section of IRL while Riverwalk Park is approximately 20 km north of Eau Gallie site. At each study site, a radon mapping survey was performed over seven north-south shore parallel transects (EA-EG and RA-RG, respectively), positioned between 75-1000 meters offshore, and approximately 1.5 km in length. Each transect was mapped three times in an alternating north-south direction. Surface water was continuously pumped on-board into an air-water exchanger. Dissolved radon-222 was purged from the water into a gaseous phase inside the exchanger. Radon-222 in the exchanger was continuously pumped into and measured by commercially available radon-in-air detectors (RAD7, Durridge, Inc.). In situ surface water temperature and salinity, as well as the water temperature in the exchanger, were also measured. Radon-in-air measurements were corrected to radon-in-water activities using the temperature-salinity dependent air-water partitioning coefficient (Schubert and others, 2012). Starting in September 2016, the USGS conducted surveys bimonthly along the same transects to determine seasonal and temporal variability of radon-222. A previously published USGS data release (https://doi.org/10.5066/F7QF8S05) contains the raw radon-222 data and physical water column data collected from September 2016 through July 2017. The final survey, presented in this data release, was conducted during two separate time periods, one at each study site, instead of successively as in previous surveys, due to unfavorable weather conditions for radon-222 mapping. This data release contains the raw radon-222 data, physical water column data, Esri GIS data files and data distribution maps of the radon-222 activity and surface water salinity collected during the final IRL trips in September 2017 and November 2017.
DOI: 10.25345/c58p31
title: MassIVE MSV000088612 - Altered NAD+ biosynthesis pathway dynamics upon PARP1 loss during mESC differentiation
title: To quantify NAD+ biosynthesis pathway metabolite levels during mouse embryonic stem cell (mESC) differentiation and the impact of genetic loss of PARP1 we utilized a targeted pathway metabolomics approach on metabolites extracted from wild type (WT) and Parp1-/- (P1KO) mESCs. This approach allowed us to observe metabolite dynamics of intermediate metabolites of the de novo, Preiss-Handler, and salvage pathways of NAD+ synthesis during mESC differentiation. We found that key metabolites from the de novo pathway are at high levels in the pluripotent state and significantly decrease over differentiation, a pattern that is contrasted with salvage pathway metabolites. In addition, we observed that loss of PARP1 significantly impacted salvage pathway metabolite levels. Collectively, our results point to an intimately linked regulatory mechanism of differentiation between PARP 1 and NAD+. Metabolite-containing acid-extracted supernatants were isolated from wild type (WT) and Parp1-/- (P1KO) mouse embryonic stem cells (mESCs). Briefly, cells from suspension plates were collected by brief, gentle centrifugation, rinsed quickly with ice-cold saline solution, and frozen on dry ice. Then 500 microL of 80% (v/v) acetonitrile chilled to -20degreeC was added to the microfuge tube, which was capped and placed immediately in liquid nitrogen. The cells were subjected to cycles of three freeze-thaw lyses alternating between liquid nitrogen and 37degreeC. Metabolites were analyzed with a SCIEX QTRAP 5500 liquid chromatograph/triple quadrupole mass spectrometer. The peak values assigned to each metabolite of each sample per replicate were normalized to the cell count of the sample.
DOI: 10.25345/c54g43
title: MassIVE MSV000088613 - Teredinibacter sp. 2052S Quorum Sensing Untargeted Metabolomics
title: Raw LC-MS/MS data of crude extract of Teredinibacter sp. 2052S quorum sensing regulon https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=23f7062e523f49b18e13e4ca13715cfa
DOI: 10.6084/m9.figshare.14544294
title: Emotions and emotion-regulation after COVID-19 restrictions

description: Cross-sectional study, questionnaire self-report data.<br>
DOI: 10.6084/m9.figshare.14544294.v2
title: Emotions and emotion-regulation after COVID-19 restrictions

description: Cross-sectional study, questionnaire self-report data.<br>
DOI: 10.6084/m9.figshare.14544294.v1
title: Emotions and emotion-regulation after COVID-19 restrictions

description: Cross-sectional study, questionnaire self-report data.<br>
DOI: 10.48511/59dk-rt58
title:  Hoder Creek 

description: Water monitoring for Hoder Creek by the Slocan River Streamkeepers Society.
DOI: 10.5066/f78g8hsg
title: EAARL Coastal Topography-Dauphin Island, Post-Hurricane Katrina, 2005

description: These datasets, prepared by the U.S. Geological Survey St. Petersburg Coastal and Marine Science Center, provide lidar-derived first-surface and bare-earth topography for Dauphin Island, Alabama. Elevation measurements were acquired by the Experimental Advanced Airborne Research Lidar (EAARL) during September 2005, immediately following Hurricane Katrina landfall.
DOI: 10.5066/f7833q8j
title: Coastal Geophysical Data Collected in 2016 nearshore Cape Canaveral, Florida

description: Geophysical data including multibeam bathymetry and backscatter, side scan sonar, and chirp subbottom were collected by Coastal Carolina University Center for Marine and Wetland Studies, Conway, South Carolina, in June 2016 in collaboration with the USGS St. Petersburg Coastal and Marine Science Center in the nearshore environment of Cape Canaveral, Florida. The goal of the effort was to broadly characterize the geology of the shelf to identify spatial linkages with previously measured coastal change and bathymetric variability (https://pubs.er.usgs.gov/publication/ofr20151180). This USGS Data Release includes the: 1) processed elevation point data (xyz) and digital elevation model (DEM), 2) processed images of backscatter and side scan sonar, and 3) chirp subbottom profile data (segy). For further information regarding data collection and/or processing please see the metadata associated with this data release.