cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28532141.v1
title: Insights into Catalytic Activity and Selectivity of 5 Hydroxymethylfurfural Oxidation on Gold Single Crystal Electrodes

description: The selective electrochemical oxidation of 5-hydroxymethylfurfural (HMF) to 2,5-furandicarboxylic acid (FDCA) holds transformative potential for advancing sustainable, bio-based polymer production. In this study, we unveil the pivotal role of gold single-crystal electrode surface orientation in directing HMF oxidation pathways under alkaline conditions. Using cyclic voltammetry, we systematically evaluate the oxidation behaviour on Au(111), Au(100), Au(110), Au(311), Au(331), and Au(210) surfaces. Our findings reveal that Au(111) and Au(100) surfaces exhibit superior catalytic activity for the complete oxidation to FDCA, while Au(110) promotes the selective formation of 5-hydroxymethyl-2-furancarboxylic acid (HMFCA). These differences in activity are closely linked to the crystallographic structure, influencing adsorption energies and reaction intermediates. In situ infrared reflection absorption spectroscopy (IRRAS) and attenuated total reflectance (ATR) spectroscopy provide direct molecular insights, identifying distinct vibrational signatures of intermediates and products. This study highlights the critical role of electrode surface structure in tuning reaction efficiency and selectivity, contributing to the development of more efficient catalytic processes in green chemistry.
DOI: 10.6084/m9.figshare.26499418.v1
title: Hospital admissions data in Australia

description: Hospital admissions data in Australia
DOI: 10.6084/m9.figshare.1627940.v1
title: Teaching and Learning Data Visualization: Ideas and Assignments

description: This article discusses how to make statistical graphics a more prominent element of the undergraduate statistics curricula. The focus is on several different types of assignments that exemplify how to incorporate graphics into a course in a pedagogically meaningful way. These assignments include having students deconstruct and reconstruct plots, copy masterful graphs, create one-minute visual revelations, convert tables into “pictures,” and develop interactive visualizations, for example, with the virtual earth as a plotting canvas. In addition to describing the goals and details of each assignment, we also discuss the broader topic of graphics and key concepts that we think warrant inclusion in the statistics curricula. We advocate that more attention needs to be paid to this fundamental field of statistics at all levels, from introductory undergraduate through graduate level courses. With the rapid rise of tools to visualize data, for example, Google trends, GapMinder, ManyEyes, and Tableau, and the increased use of graphics in the media, understanding the principles of good statistical graphics, and having the ability to create informative visualizations is an ever more important aspect of statistics education. Supplementary materials containing code and data for the assignments are available online.
DOI: 10.6084/m9.figshare.7578443.v1
title: Nicastrin knockdown RT-qPCR - transient knockdown shRNA test

description: These data are the real-time qPCR data from 5 separate shRNA constructs (A06-A10) targeting nicastrin.<br>
DOI: 10.6084/m9.figshare.14191082.v1
title: Crocosphaera_WH0005_assembly

description: The reference genome assembled here is composed of 126 contigs, only 1/10 of the number of contigs in the previous reference of this strain
DOI: 10.6084/m9.figshare.628089.v1
title: Molecular dataset for phylogenetic analysis of the butterfly subfamily Satyrinae (Nymphalidae)

description: Molecular dataset for species in the butterfly subfamily Satyrinae. There are three gene blocks: Cytochrome oxidase I (COI), elongation factor 1 (EF1a) and wingless. This dataset was used in the study: Peña, C., N. Wahlberg, E. Weingartner, U. Kodandaramaiah, S. Nylin, A.V.L. Freitas & A.V.Z. Brower. 2006. Higher level phylogeny of Satyrinae butterflies (Lepidoptera: Nymphalidae) based on DNA sequence data. Molecular Phylogenetics and Evolution 40(1): 29-49. doi:10.1016/j.ympev.2006.02.007
DOI: 10.6084/m9.figshare.19166280.v1
title: Selection signatures of Qinchuan cattle based on whole-genome sequences

description: Qinchuan cattle has gradually improved in body shape and growth rate in the long-term breeding process from the draft cattle to beef cattle. As the head of the five local yellow cattle in China, the Qinchuan cattle has been designated as a specialized beef cattle breed. We investigated the selection signatures using whole genome sequencing data in Qinchuan cattle. Based on <i>F</i>st, we detected hundreds of candidate genes under selection across Qinchuan, Red Angus, and Japanese Black cattle. Through protein-protein interaction analysis and functional annotation of candidate genes, the results revealed that <i>KMT2E</i>, <i>LTBP1</i> and <i>NIPBL</i> were related to brain size, body characteristics, and limb development, respectively, suggesting that these potential genes may affect the growth and development traits in Qinchuan cattle. <i>ARIH2</i>, <i>DACT1</i> and <i>DNM2</i>, <i>et al.</i> are related to meat quality. Meanwhile, <i>TBXA2R</i> can be used as a gene associated with reproductive function, and <i>USH2A</i> affect coat color. This provided a glimpse into the formation of breeds and molecular genetic breeding. Our findings will promote genome-assisted breeding to improve animal production and health.
DOI: 10.6084/m9.figshare.27203634.v1
title: Research Data for LSC-7701 samples

description: Using nationally representative data from Douyin (N=7701), the conceptual model was validated through PLS-SEM. The findings indicate that PM enhances the positive impacts of SSP on both consumers’ emotional experiences (EX) and PI. However, the multiple group analysis (MGA) based on biological sex shows that the significant enhancement of PM on SSP's effect on PI is evident only in females. Notably, the only significant gender difference is found in the effect of SSP on PI, with males experiencing a stronger positive influence than females.
DOI: 10.6084/m9.figshare.27126231.v1
title: <b>The data set for </b><b>The iron chelator pulcherriminic acid functions as a </b><b>light sensor</b><b> in </b><b><i>Bacillus subtilis </i></b><b>biofilms</b>

description: <i>B. subtilis</i> biofilms have a distinctive light response mechanism that is mediated by the iron chelator pulcherriminic acid.
DOI: 10.6084/m9.figshare.21069244.v1
title: Supplementary Material for: Understanding the Association between Alcohol Stigma and Alcohol Consumption within Europe: A Cross-Sectional Exploratory Study

description: <b><i>Introduction:</i></b> Stigma towards alcohol-related conditions is more pronounced than stigma against any other mental illness and has remained high throughout past decades. Although alcohol consumption is a known and persistent contributor to the burden of disease and interpersonal threat and may thus shape public attitudes towards consumption, no study to date has provided an overview of the prevalence of alcohol stigma and its association with (a) alcohol consumption and (b) harm attributable to alcohol across Europe. As a social reaction to thresholds of accepted use of alcohol, stigma could impact consumption, resulting in a reduced quantity or at least less harmful drinking patterns. This contribution provides an initial overview by addressing the following research questions. (i) What are the country-level prevalence rates of alcohol stigma compared across European countries? (ii) Is alcohol stigma associated with (a) alcohol consumption and (b) alcohol-attributable harm? (iii) Is there an association between alcohol stigma and alcohol consumption by type of beverage? <b><i>Methods:</i></b> We combined data on country-level desire for social distance towards “heavy drinkers” (European Values Survey, operationalization of “alcohol stigma”) with indicators of alcohol consumption, including adult per capita consumption (APC), heavy episodic drinking, consumption by type of beverage (wine, beer, spirits), and harm attributable to alcohol, namely age-standardized disability-adjusted life years lost to alcohol consumption (AADALYs) for 28 countries. Linear regression models were applied<i>.</i> <b><i>Results:</i></b> (i) Social distance varied noticeably across countries (M = 62.9%, SD = 16.3%) in a range of 28.3% and 87.3%. (ii) APC was significantly positive related to social distance (β = 0.55, <i>p</i> = 0.004). (iii) Wine consumption was significantly negative related to social distance; the opposite was true for spirits consumption. No association was found for beer consumption<i>.</i> The best model fit was achieved with APC (β = 0.48, <i>p</i> = 0.002) and wine per capita consumption (β = −0.55, <i>p</i> &lt; 0.001) explaining 57.0% (adjusted <i>R</i><sup>2</sup>) of the variance in social distance. <b><i>Conclusion:</i></b> Our study shows a strong relationship between country-level alcohol stigma and alcohol consumption. If stigma was to deter people from harmful alcohol consumption, it would be expected that higher levels of alcohol stigma are associated with lower levels of overall alcohol consumption or consumption of spirits in particular. Instead, stigma seems to be a reaction to harmful drinking patterns without changing these patterns for the better.
DOI: 10.6084/m9.figshare.24171849.v2
title: Supplementary data for Sogatella furcifera

description: Supplementary data for the chromosome-level genome assembly of the Sogatella furcifera
DOI: 10.6084/m9.figshare.26991376.v1
title: Additional file 4 of Transcriptional profiling of human cartilage endplate cells identifies novel genes and cell clusters underlying degenerated and non-degenerated phenotypes

description: Additional file 4: Table S7. Percentage expressed and scaled expressed of differentially expressed genes from bulk RNA sequencing analysis, by cluster.
DOI: 10.6084/m9.figshare.19688854.v2
title: Burst Information & waiting time

description: All parameters and waiting time of the 1863 bursts from repeating FRB 20201124A detected by the Five-hundred-meter Aperture Spherical radio Telescope (FAST) during April and May, 2021. These data are used in the paper "<strong>A fast radio burst source at a complex magnetised site in a barred galaxy"</strong>
DOI: 10.6084/m9.figshare.6265487.v1
title: Patient10

description: Male Patient with 204 slice of pulmonary embolism CT-Angiography.
DOI: 10.6084/m9.figshare.21080545.v2
title: Metal-free synthesis of indenone derivatives from <i>ortho</i>-alkynylaryl ketones mediated by the combination of dialkyl phosphonates and CBr<sub>4</sub>

description: A novel metal-free synthesis of indenone derivatives mediated by CBr<sub>4</sub> and diethyl phosphonate is reported. The methodology has a relatively wide substrate scope and is suitable to access a π-extended indenone and an <i>s</i>-indacene-1,5-dione derivative as well.
DOI: 10.6084/m9.figshare.5217625.v2
title: Assessing and Quantifying Clusteredness: The OPTICS Cordillera

description: This article provides a framework for assessing and quantifying “clusteredness” of a data representation. Clusteredness is a global univariate property defined as a layout diverging from equidistance of points to the closest neighboring point set. The OPTICS algorithm encodes the global clusteredness as a pair of clusteredness-representative distances and an algorithmic ordering. We use this to construct an index for quantification of clusteredness, coined the OPTICS Cordillera, as the norm of subsequent differences over the pair. We provide lower and upper bounds and a normalization for the index. We show the index captures important aspects of clusteredness such as cluster compactness, cluster separation, and number of clusters simultaneously. The index can be used as a goodness-of-clusteredness statistic, as a function over a grid or to compare different representations. For illustration, we apply our suggestion to dimensionality reduced 2D representations of Californian counties with respect to 48 climate change related variables. Online supplementary material is available (including an R package, the data and additional mathematical details).
DOI: 10.6084/m9.figshare.24750705.v1
title: Amino acid sequence of Cochlearia groenlandica haplotig 1

description: Amino acid sequences of genes identified in Cochlearia groenlandica haplotig 1
DOI: 10.6084/m9.figshare.8141840.v1
title: Implications of liquid-liquid phase separation in plant chromatin organization and transcriptional control

description: ICE_normalized_insituHiC_Col_on_hyb_20k.zip:<br>The normalized Arabidopsis thaliana Hi-C matrix (20 kb) reported in: Zhu W, Hu B, Becker C, Dogan ES, Berendzen KW, Weigel D, Liu C: Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid. Genome Biol 2017, 18:157.<br>KEE.txt: <br>coordinates of KEEs reported in: Grob S, Schmid MW, Grossniklaus U: Hi-C analysis in Arabidopsis identifies the KNOT, a structure with similarities to the flamenco locus of Drosophila. Mol Cell 2014, 55:678-693.<br>generate_Fig2_plots.R:R scripts to generate plots. (shown as panels a-d in file "Fig2.jpg"). It requires "KEE.txt" and "ICE_normalized_insituHiC_Col_on_hyb_20k" as input files.<br>
DOI: 10.6084/m9.figshare.22573018.v2
title: Data and R code for "Opportunistic evidence of the impact of bacterial infections on social integration in vampire bats"

description: Social integration can affect an individual’s susceptibility to infectious disease. Conversely, infectious disease can reduce an individual’s social activity. Yet, it remains unclear to what extent short-term infections can inhibit aspects of long-term social integration (e.g., formation of new relationships). During a previous study on relationship formation, we captured female common vampire bats (<em>Desmodus rotundus</em>) from different wild populations and housed them together in captivity. Upon introduction, we observed an unplanned outbreak of bacterial infections that caused cutaneous lesions. After treating infected bats with an antibiotic, 5 bats recovered, but 4 others suffered lasting injuries. We analyzed how allogrooming rates changed over time among familiar and new pairs consisting of the 9 infected and 12 asymptomatic bats. Infected bats demonstrated lethargy and reduced social behavior. We found that more severely infected bats both gave and received less allogrooming compared to asymptomatic bats, that this infection effect was initially larger for new pairs relative to familiar pairs, and that this effect decreased as infected bats recovered and new pairs became more familiar. These observed effects, although opportunistic and based on only 9 infected bats, were consistent with the hypothesis that short-term infections can impact relationship formation when new individuals join a group.
DOI: 10.6084/m9.figshare.13022912.v1
title: JVASP-64035 to JVASP-64979

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.14473389.v2
title: Mechanomics RT-DC Set 03 - HSPCs

description: Entry is a part of <b>Mechanomics</b> collection (10.6084/m9.figshare.c.5399826) that contains materials supporting findings presented in the following manuscript:<i>Urbanska, M., Ge, Y.</i> et al.,<br><b><i>De novo identification of universal cell mechanics gene signatures</i></b>BiorXiv: https://doi.org/10.1101/2021.04.26.441418<i>;</i><i> </i><i>first published:</i><i> </i>27th April 2021<i>, last updated:</i><i> </i>4th Nov 2024<br>eLife: https://doi.org/10.7554/eLife.87930<i>; first published:</i><i> </i>23rd March 2023<i>, last updated:</i><i> </i>27th Dec 2024<br>This dataset contains mechanical measurement of CD34-positive human hematopoietic stem and progenitor cells (HSPCs) isolated from mobilized peripheral blood and treated (Arulmozhivarman <i>et al.</i> 2017 <i>Sci Rep</i>):<br>i) with a histone deacetylase inhibitor, valproic acid (VPA)<br>ii) untreated control (PBS).<br><b>Of note: </b>This dataset was removed from later versions of the manuscript. Measurements were performed using real-time deformability cytometry (RT-DC).<br><b>_rtdc.zip </b>- contains data acquired during the measurments in '*.rtdc' format<b>_tsv.zip </b>- contains extended data in a '*.tsv' format<br><b>_glmm.zip </b>- contains result summaries of statistical analysis comparing Young's moduli of the different cell types using generalised linear mixed effects models<br>Arulmozhivarman, G. <i>et al.</i> Zebrafish In-Vivo Screening for Compounds Amplifying Hematopoietic Stem and Progenitor Cells: Preclinical Validation in Human CD34+ Stem and Progenitor Cells. <i>Sci Rep</i> 7, <b>12084</b> (2017). https://doi.org/10.1038/s41598-017-12360-0
DOI: 10.6084/m9.figshare.27909046.v1
title: Supplementary Table 2 â€“ Modelling individual variation in human walking gait across populations and walking conditions via gait recognition

description: Additional details of the convolutional long short-term memory (LSTM) neural network architectures applied for gait recognition. N = number of samples.
DOI: 10.15468/dl.7crhzq
title: Occurrence Download

description: A dataset containing 2391 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aphrophora alni (Fallén, 1805)"
 ]
}

 The dataset includes 2391 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009415-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/cj4gxpp5yk
title: Insulitis and exocrinitis in autoantibody-positive non-diabetic individuals nPOD donors: individual characteristics

description: The clinical characteristics of the 30 organ donors with available virtual slides who were included in the present study are individually detailed in Supplementary Table 1, for the article "Low prevalence of high-risk HLA-DQB1 haplotypes in autoantibody-positive non-diabetic nPOD donors"
DOI: 10.6084/m9.figshare.21766307.v1
title: FULL SAMPLE FOR REGRESSION.xlsx

description: Sales data
DOI: 10.6084/m9.figshare.25606125.v1
title: Supplementary Material for: Oesophageal Lichen Planus Successfully Treated with Budesonide Orodispersible Tablets, a Case Report

description: Introduction 
Lichen planus is a relatively common inflammatory condition of the nails, skin and mucosal surfaces. Oesophageal involvement of lichen planus is thought to be very rare, mainly described in case reports, but is associated with a high risk of oesophageal stenosis as well as squamous cell carcinoma. No evidence based treatment recommendations exist, with the majority of described treatment regimens involving systemic immunosuppression. 
Case report
In this case report, we describe a novel approach in treating oesophageal lichen planus in a patient with budesonide orodispersible tablets, a treatment normally reserved for oeosinophilic oesophagitis. The patient achieved complete relief of dysphagia, with a follow-up oesophagogastroduodenoscopy 2 months after treatment commencement being macroscopically and microscopically free of inflammatory activity. This case report is to our knowledge the first to report this treatment regimen in oesophageal lichen planus. 
Conclusion
We consider a trial of budesonide orodispersible tablets a reasonable initial management as it’s a local therapy specific to the oesophagus with a more benign side effect profile than systemic immunosuppression, but further studies need to be undertaken to corroborate our findings. Also, based on the severity and malignant potential of oesophageal lichen planus, we suggest that physicians be liberal in ordering oesophagogastroduodenoscopy with biopsy taking as part of the work up of dysphagia in a patient with known lichen planus.
DOI: 10.6084/m9.figshare.9785231.v1
title: Supplementary Material for: Effects of Exercise Training on Handgrip Strength in Older Adults: A Meta-Analytical Review

description: <b><i>Background:</i></b> Handgrip strength measurements are feasible with older adults and a reliable indicator for vitality, physical function, and several risk factors in the ageing process. Interventions with exercise training induce a variety of strength, balance, and endurance improvements. The pooled transfer effects of exercise training on handgrip strength has not been investigated to date. Thus, the objective of this meta-analytical review is to examine the effects of different exercise training on handgrip strength in healthy community-dwelling older adults of 60 years or older. <b><i>Methods:</i></b> The literature search was conducted in three databases (PubMed, Web of Science, SPORTDiscus) using the following search terms with Boolean conjunctions: (hand grip* OR grip strength OR grip power) AND (sport* OR train* OR exercis* OR strength OR intervention OR endurance OR resistance OR balance OR aerob*) AND (old* OR elder* OR senior*). Non-randomized and randomized controlled trials with an exercise training and handgrip strength as the outcome parameter were screened. Study quality was independently assessed by two researchers using the PEDro scale. Comparison of handgrip strength between the intervention and control groups was conducted by using the hedges g (including adjustment for small sample sizes), calculating standardized mean differences (SMDs). A random effects inverse-variance model was applied for statistical analysis. <b><i>Results:</i></b> Twenty-four trials (mean PEDro score 5.8 ± 0.9) with a total of 3,018 participants (mean age 73.3 ± 6.0 years) were included. Small but significant effects (<i>p</i> &lt; 0.001) on handgrip strength were observed (SMD 0.28, 95% CI 0.13–0.44). Study heterogeneity (<i>I</i><sup>2</sup> 56%) and the funnel shape for publication bias analyses were acceptable. <b><i>Conclusions:</i></b> Meaningful but small transfer effects of a multitude of different training approaches on handgrip strength occurred in healthy community-dwelling older adults. Handgrip strength cannot clearly be recommended to assess general functional performance for all kinds of exercise programs, whereas task-specific training and multimodal training modes seem to provide an appropriate stimulus to also improve handgrip strength.
DOI: 10.6084/m9.figshare.28903619
title: Effect of variable initial salt concentration: Evaporation and precipitation characteristics

description: Evaporation rate and salt precipitation data: Variable initial salt concentration load