cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21673169.v1
title: Supplementary Material for: Glucagon-Like Peptide-2 Ameliorates Age-Associated Bone Loss and Gut Barrier Dysfunction in Senescence-Accelerated Mouse Prone 6 Mice

description: <b><i>Introduction:</i></b> Senile osteoporosis is one of the most common age-related diseases worldwide. Glucagon like peptide-2 (GLP-2), a naturally occurring gastrointestinal peptide, possesses therapeutic effects on bone loss in postmenopausal women and ovariectomized rats. However, the role of GLP-2 in senile osteoporosis and underlying mechanisms has not been explored. <b><i>Methods:</i></b> GLP-2 was subcutaneously injected into the 6-month-old male senile osteoporosis model of senescence-accelerated mouse prone 6 (SAMP6) mice for 6 weeks. SAMP6 subjected to normal saline and senescence-accelerated mouse resistant 1 served as control groups. Micro-computed tomography was performed to evaluate the bone mass and microarchitecture of the mice. Osteoblastic and osteoclastic activities were determined by biochemical, quantitative real-time PCR, histological, and histomorphometric analyses combined with hematoxylin-eosin, toluidine blue, and tartrate-resistant acid phosphatase staining. We also examined the proteins and structure of intestinal tight junction using immunohistochemical assay as well as a transmission electron microscope. Serum inflammation marker levels were measured using ELISA. Additionally, anti-oxidative enzymes GPX-4 and SOD-2 and receptors of GLP-2 and vitamin D expression in the ileum and colon were detected under immunofluorescence staining. <b><i>Results:</i></b> Six-week GLP-2 treatment attenuated bone loss in SAMP6 mice, as evidenced by increased bone mineral density, improved microarchitecture in femora, and enhanced osteogenic activities. In contrast, the activity of osteoclastic activity was not obviously inhibited. Moreover, GLP-2 ameliorated tight junction structure and protein expression in the intestinal barrier, which was accompanied by the reduction of TNF-α level. The expression of receptors of intestinal GLP-2 and vitamin D in the ileum was elevated. Furthermore, the oxidative stress in the intestines was improved by increasing the GPX-4 and SOD-2 signaling. <b><i>Conclusion:</i></b> Our findings suggest that GLP-2 could ameliorate age-associated bone loss, tight junction structure, and improved antioxidant enzyme activity in the gut in SAMP6 mice. Amelioration of gut barrier dysfunction may potentially contribute to improving bone formation and provide evidence for targeting the entero-bone axis in the treatment of senile osteoporosis.
DOI: 10.5281/zenodo.7380507
title: Dataset of European Literary Awards

description: Dataset of the Polish, German and Czech literary prizes for the needs of research into European literary prizes environment. This is the test version for the sake of preliminary research and data model validation. This dataset relies heavily on the Wikidata and Wikipedia entities with elements of manual label and harmonisation of people, works and organisations with the LOD cloud. Most of this dataset is available under the CC0 license (all Wikidata data, data model itself and any additions from the authors of the dataset), but it also contains information from VIAF (Virtual International Authority File) which is made available under the ODC Attribution License.
description: This dataset contains information from VIAF (Virtual International Authority File) which is made available under the ODC Attribution License.
DOI: 10.6084/m9.figshare.21673172.v1
title: Supplementary Material for: Dose-Response Relationship between Red Blood Cell Distribution Width and In-Hospital Mortality in Oldest Old Patients with Acute Ischemic Stroke

description: <b><i>Introduction:</i></b> It is crucial to identify predictors of mortality in the early stage of acute ischemic stroke for the oldest old (aged ≥80 years) because of their poor overall survival outcomes. However, limited data are available as the oldest old have often been excluded from previous clinical studies. Hence, we aimed to assess the predictive effect of red blood cell distribution width on in-hospital mortality and the dose-response relationship between the red blood cell distribution width and in-hospital mortality in oldest old with acute ischemic stroke. <b><i>Methods:</i></b> A retrospective cohort study was performed in two tertiary hospitals. Patients aged ≥80 years admitted due to acute ischemic stroke from January 1, 2014, to January 31, 2020, were included in the study. We divided the eligible patients into 3 groups with tertiles of red blood cell distribution width. Restrictive cubic spline and robust locally weighted regression analysis were performed to test the dose-response relationship between red blood cell distribution width and the in-hospital mortality risk. All-cause in-hospital mortality was the main study outcome. <b><i>Results:</i></b> Overall, 606 patients were included in the final analysis. Red blood cell distribution width was categorized into 3 groups (T1: &lt;13.7%, T2: 13.8–15.7%, and T3: &gt;15.7%). The rationality of this categorization was then validated with restricted cubic spline and robust locally regression smoothing scatterplot, respectively. After adjusting for demographic and clinical features, a higher red blood cell distribution width was independently associated with in-hospital mortality and the hazard ratio (HR) was 3.31 (95% CI 2.47–4.45, <i>p</i> &lt; 0.001). There was a positive dose-response relationship between red blood cell distribution width and mortality risk. Sensitivity analysis identified no conspicuous change in the HR. <b><i>Conclusions:</i></b> Red blood cell distribution width may be a valuable and simple measure for predicting in-hospital mortality in oldest old patients with acute ischemic stroke.
DOI: 10.6084/m9.figshare.21673184.v1
title: Supplementary Material for: The Duration of Neonatal Phototherapy and Allergic Disorders: The Japan Environment and Children’s Study

description: <b><i>Introduction:</i></b> Currently, the association between the duration of neonatal phototherapy and the risk of allergic disorders has not been reported. This observational cohort study aimed to examine the association between allergic disorders, including food allergies, that are present before 3 years of age and the duration of phototherapy using the nationwide birth cohort data. <b><i>Methods:</i></b> The Japan Environment and Children’s Study was a nationwide birth cohort study. Data of 77,064 infants aged 1 year, 1.5 years, 2 years, and 3 years were analyzed. We divided the participants into three groups: no phototherapy, short phototherapy (1–24 h), and long phototherapy (&gt;24 h) and evaluated the cumulative incidence of allergic disorders before 3 years of age, including asthma, atopic dermatitis, and food allergies. Logistic regression analysis was performed to assess the impact of phototherapy duration on the cumulative incidence of allergic disorders. <b><i>Results:</i></b> After adjustment for potential risk factors, long phototherapy was found to be positively associated with food allergies at age 2 years (OR: 1.16; 95% CI: 1.01–1.33) and all allergic disorders at age 3 years (OR: 1.12; 95% CI: 1.01–1.24), including food allergies (OR 1.18; 95% CI: 1.04–1.35). <b><i>Conclusion:</i></b> A long duration of neonatal phototherapy was positively associated with the risk of allergic disorders, especially food allergies.
DOI: 10.6084/m9.figshare.21359697.v1
title: Supplementary Material for: The impact of malnutrition, inflammation on cognitive impairment in hemodialysis patients-A multicenter study

description: Introduction: Cognitive impairment is prevalent in patients undergoing hemodialysis (HD), which is related to the nutritional and inflammatory status of this population. Malnutrition-inflammation score (MIS) has been identified as a useful tool to evaluate nutrition and inflammation status. The aim of this study is to investigate the association between MIS and cognitive impairment in HD patients. Methods: This was a multicenter observational cohort study with 1591 patients undergoing HD. Nutritional and inflammatory status was evaluated with MIS, anthropometric measurements, and body composition assessments. Cognitive function was evaluated with the Mini Mental State Examination (MMSE). The associations between MIS and cognitive impairment were analyzed by multivariable logistic regression models. Results: Among 1591 HD patients, the mean MIS was 6.0±2.6. Patients with higher MIS had significantly lower MMSE scores. 311 patients had cognitive impairment. After adjusting clinical confounders, higher MIS was independently associated with increased rate of cognitive impairment both as a categorized variable (OR, 1.358; 95%CI, 1.010-1.825; P=0.045) and as a continuous variable (OR, 1.113; 95%CI, 1.053-1.178; P&lt;0.001). Subgroup analysis showed a stronger association between MIS and cognitive impairment in males, the population with age 41-60 years, and 61-80 years, no smoker, living by oneself, HD combined with or without hemoperfusion as dialysis modality. ROC curve analysis of MIS showed 60.1% sensitivity and 52.0% specificity in predicting cognitive impairment (AUC 0.604; 95%CI 0.567-0.640, P&lt;0.001). Conclusions: MIS was an independently associated with cognitive impairment in HD patients.
DOI: 10.5281/zenodo.7382661
title: Replication files for: "Censuscoding: a privacy-preserving alternative to geocoding"

description: Geocoding is an important tool for research, but precise street addresses and geospatial coordinates may risk revealing personally identifiable information if not used carefully. Censuscoding is a self-contained tool for determining the Census block group that contains a street address, to solve this challenge. Censuscoding maintains privacy by providing an anonymous view of location through block groups, which vary between 600 to 3,000 individuals in population. These replication files are used to build the lookup data distributed with censuscoding v0.2.0. Please see the corresponding GitHub repositories https://github.com/ripl-org/censuscoding and https://github.com/ripl-org/censuscoding-data.
description: Your use of the Software License along with any related Documentation, Data, etc. is governed by the terms and conditions which are available in the LICENSE.md file below.
DOI: 10.5281/zenodo.7396597
title: Replication files for: "Censuscoding: a privacy-preserving alternative to geocoding"

description: Geocoding is an important tool for research, but precise street addresses and geospatial coordinates may risk revealing personally identifiable information if not used carefully. Censuscoding is a self-contained tool for determining the Census block group that contains a street address, to solve this challenge. Censuscoding maintains privacy by providing an anonymous view of location through block groups, which vary between 600 to 3,000 individuals in population. These replication files are used to build the lookup data distributed with censuscoding v0.2.0. Please see the corresponding GitHub repositories https://github.com/ripl-org/censuscoding and https://github.com/ripl-org/censuscoding-data.
description: Your use of the Software License along with any related Documentation, Data, etc. is governed by the terms and conditions which are available in the LICENSE.md file below.
DOI: 10.5519/qd.a34t1gdq
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (71 records)
DOI: 10.5281/zenodo.7344945
title: Semantically tagged Finnish parliament discussions 1991-2015

description: <strong>Semantically tagged Finnish parliament discussions 1991-2015</strong> The original data is this (Rauh et al, 2017): https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/E4RSP9 We have imported the raw text out of the original data set without speaker and party tags. The Finnish text has been first tagged with UD2 parser using the Mylly service of the Language Bank of Finland. After UD2 parse, semantic tags have been added to the text with FiST (Kettunen, 2019). <strong>Output form</strong> # newdoc # newpar # sent_id = 1 # text = Arvoisa herra puhemies! Arvoisa arvoisa Z99 amod herra#herra#Noun#S2.2m S9 compound:nn puhemies#puhemies#Noun#G1.1/S2 root ! PUNCT The output consists of the 1) token word form of the text, 2) lemma of the token, 3) POS, 4) semantic tag and 5) UD2 grammatical relation of the word in the sentence. Our semantic tagger does not resolve ambiguity. If the lexeme has multiple possible semantic tags, they are all included in the output (e.g., herra#herra#Noun#<strong>S2.2m S9</strong> compound:nn). Slash notation in the semantic tags (e.g., puhemies#puhemies#Noun#<strong>G1.1/S2</strong>) indicates that the word can belong to two or more categories (Löfbeg, 2017). If the semantic category of the word is not recognized, the word is tagged with Z99. The data consists of 4 036 269 sentences and ca. 65.247 million words. Lexical coverage of FiST for the data is 86.05 %, i.e. 86% of the words are known for the tagger and marked with a semantic tag. <strong>References</strong> Kettunen, Kimmo (2019). FiST – towards a Free Semantic Tagger of Modern Standard Finnish. IWCLUL2019, http://aclweb.org/anthology/W19-0306 Rauh, Christian; De Wilde, Pieter; Schwalbach, Jan, 2017, "Corp_Eduskundta.Rdata", The ParlSpeech data set: Annotated full-text vectors of 3.9 million plenary speeches in the key legislative chambers of seven European states, https://doi.org/10.7910/DVN/E4RSP9/U8VZHK, Harvard Dataverse, V1. Lofberg, L. (2017). Creating large semantic lexical resources for the Finnish language. [Doctoral Thesis, Lancaster University]. Lancaster University. https://doi.org/10.17635/lancaster/thesis/3 UCREL Semantic Analysis System (USAS). https://ucrel.lancs.ac.uk/usas/
DOI: 10.5281/zenodo.7344944
title: Semantically tagged Finnish parliament discussions 1991-2015

description: <strong>Semantically tagged Finnish parliament discussions 1991-2015</strong> The original data is this (Rauh et al, 2017): https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/E4RSP9 We have imported the raw text out of the original data set without speaker and party tags. The Finnish text has been first tagged with UD2 parser using the Mylly service of the Language Bank of Finland. After UD2 parse, semantic tags have been added to the text with FiST (Kettunen, 2019). <strong>Output form</strong> # newdoc # newpar # sent_id = 1 # text = Arvoisa herra puhemies! Arvoisa arvoisa Z99 amod herra#herra#Noun#S2.2m S9 compound:nn puhemies#puhemies#Noun#G1.1/S2 root ! PUNCT The output consists of the 1) token word form of the text, 2) lemma of the token, 3) POS, 4) semantic tag and 5) UD2 grammatical relation of the word in the sentence. Our semantic tagger does not resolve ambiguity. If the lexeme has multiple possible semantic tags, they are all included in the output (e.g., herra#herra#Noun#<strong>S2.2m S9</strong> compound:nn). Slash notation in the semantic tags (e.g., puhemies#puhemies#Noun#<strong>G1.1/S2</strong>) indicates that the word can belong to two or more categories (Löfbeg, 2017). If the semantic category of the word is not recognized, the word is tagged with Z99. The data consists of 4 036 269 sentences and ca. 65.247 million words. Lexical coverage of FiST for the data is 86.05 %, i.e. 86% of the words are known for the tagger and marked with a semantic tag. <strong>References</strong> Kettunen, Kimmo (2019). FiST – towards a Free Semantic Tagger of Modern Standard Finnish. IWCLUL2019, http://aclweb.org/anthology/W19-0306 Rauh, Christian; De Wilde, Pieter; Schwalbach, Jan, 2017, "Corp_Eduskundta.Rdata", The ParlSpeech data set: Annotated full-text vectors of 3.9 million plenary speeches in the key legislative chambers of seven European states, https://doi.org/10.7910/DVN/E4RSP9/U8VZHK, Harvard Dataverse, V1. Lofberg, L. (2017). Creating large semantic lexical resources for the Finnish language. [Doctoral Thesis, Lancaster University]. Lancaster University. https://doi.org/10.17635/lancaster/thesis/3 UCREL Semantic Analysis System (USAS). https://ucrel.lancs.ac.uk/usas/
DOI: 10.6084/m9.figshare.13019966.v4
title: FaceBold

description: The preprocessed fMRI data of the FaceBold dataset.<br>If you find our data useful in your research or publication, please cite our work:<br><br>[1] Changde Du, Changying Du, Lijie Huang, Haibao Wang and Huiguang He*. Structured Neural Decoding with Multi-task Transfer Learning of Deep Neural Network Representations. <i>IEEE Transactions on Neural Networks and Learning Systems, 2020. </i> <br><i><br></i>[2] Changde Du, Changying Du, Lijie Huang and Huiguang He*. Conditional Generative Neural Decoding with Structured CNN Feature Prediction. <i>AAAI 2020.</i> <i><br></i><pre><br></pre>
DOI: 10.6084/m9.figshare.21673349.v1
title: Supplementary Material for: Ischemic Optic Neuropathy Secondary to Varicella-Zoster Vasculitis Mimicking Giant Cell Arteritis: Case Report

description: Differentiating GCA from its many mimickers remains a challenge in the daily clinical practice, especially in patients presenting with unspecific manifestations. We present the case of an 82-year-old woman who presented with a 3-week history of left eye vision loss secondary to bilateral edema and hemorrhage of the optic discs. Despite negative bilateral temporal artery biopsies, the elevation of the inflammatory markers and brain MRA findings suggestive of temporal arteritis as well as stenosis of the basilar artery led us to initiate treatment with high-dose steroids. Inflammatory markers remained elevated despite high-dose steroids which prompted additional work leading to a diagnosis of varicella-zoster encephalitis. Steroid treatment was quickly tapered off and treatment with acyclovir resulted in the normalization of the acute phase reactants. The persistence of elevated inflammatory markers despite high-dose steroids should prompt additional work up for the search of an alternative diagnosis of GCA mimickers.
DOI: 10.17043/oden-ascos-2008-aerosol-stratification-1
title: Vertical stratification of submicrometer aerosol particles measured during the high-Arctic ASCOS expedition 2008
DOI: 10.5281/zenodo.6511908
title: Altitude effect on cutaneous melanoma epidemiology in the Veneto Region (Northern Italy): a pilot study.

description: The incidence of cutaneous melanoma has been increasing in the last decades among fair-skinned population. Despite complex and multifactorial etiology, the exposure to ultraviolet radiation (UVR) is the most consistent modifiable risk factor for melanoma. Several factors influence the amount of UVR reaching Earth’s surface. Our study aimed to explore the relationship between melanoma and altitude in an area with mixed geographic morphology, such as the Veneto region (Italy). We included 2,752 melanoma patients who were referred to our centers between 1998 and 2014. Demographics, histological and clinical data, and survival information were extracted from a prospectively maintained local database. Head/neck and acral melanoma were more common in patients from the hills and the mountains, while limb and trunk melanoma were more common in patients living in plain and coastal areas. Breslow thickness, ulceration and mitotic rate impaired with increased altitude. However, geographical area of origin was not associated with overall or disease-free survival. Geographical area of origin of melanoma patients and the “coast-plain-hill gradient” could help to estimate the influence of different sun exposure and to explain the importance of vitamin D level in skin-cancer control .
DOI: 10.5281/zenodo.6511907
title: Altitude effect on cutaneous melanoma epidemiology in the Veneto Region (Northern Italy): a pilot study.

description: The incidence of cutaneous melanoma has been increasing in the last decades among fair-skinned population. Despite complex and multifactorial etiology, the exposure to ultraviolet radiation (UVR) is the most consistent modifiable risk factor for melanoma. Several factors influence the amount of UVR reaching Earth’s surface. Our study aimed to explore the relationship between melanoma and altitude in an area with mixed geographic morphology, such as the Veneto region (Italy). We included 2,752 melanoma patients who were referred to our centers between 1998 and 2014. Demographics, histological and clinical data, and survival information were extracted from a prospectively maintained local database. Head/neck and acral melanoma were more common in patients from the hills and the mountains, while limb and trunk melanoma were more common in patients living in plain and coastal areas. Breslow thickness, ulceration and mitotic rate impaired with increased altitude. However, geographical area of origin was not associated with overall or disease-free survival. Geographical area of origin of melanoma patients and the “coast-plain-hill gradient” could help to estimate the influence of different sun exposure and to explain the importance of vitamin D level in skin-cancer control .
DOI: 10.5522/04/21603651.v1
title: Druggable proteins influencing cardiac structure and function: implications for heart failure therapies and cancer related cardiotoxicity

description: Aggregate data for the Schmidt <em>et. al.</em> GWAS on 16 biventricular cardiac MRI traits, released in genomics build 37 and 38. <br> Estimates pertain to the genetic association with 16 cardiac MRI traits measured in UK Biobank participants. Analyses were conducted with and without accounting for body surface area and systolic blood pressure (see README file for further detials).
DOI: 10.5281/zenodo.7381894
title: Identification of protein-protein interaction bridges for multiple sclerosis

description: Supplementary data for thesis "Identification of protein-protein interaction bridges for multiple sclerosis"
DOI: 10.5281/zenodo.7381893
title: Identification of protein-protein interaction bridges for multiple sclerosis

description: Supplementary data for thesis "Identification of protein-protein interaction bridges for multiple sclerosis"
DOI: 10.5281/zenodo.7134271
title: Water vapor isotopic data of short-duration heavy rainfall events in Nanjing

description: Water vapor isotopic data of short-duration heavy rainfall events in Nanjing
DOI: 10.5281/zenodo.7134270
title: Water vapor isotopic data of short-duration heavy rainfall events in Nanjing

description: Water vapor isotopic data of short-duration heavy rainfall events in Nanjing
DOI: 10.11588/data/shvino/xsp9oa
title: Compound-Chromen-MS.zip
DOI: 10.11588/data/shvino/akl7ag
title: Compound_116.zip
DOI: 10.11588/data/shvino/nbrpge
title: Compound_90.zip
DOI: 10.11588/data/shvino/c2mbdq
title: Additional DFT calculations.zip
DOI: 10.11588/data/shvino/dry7ou
title: Compound_111.zip
DOI: 10.11588/data/shvino/2jxp7x
title: Compound_127.zip
DOI: 10.11588/data/shvino/us71wq
title: Compound-Ethin-CH-MS.zip
DOI: 10.11588/data/shvino/wr3hsb
title: Compound_79.zip
DOI: 10.11588/data/shvino/aqu2o9
title: Compound_102.zip
DOI: 10.11588/data/shvino/dacad1
title: Additional Spectra.zip
DOI: 10.11588/data/shvino/ravqau
title: Compound_65.zip
DOI: 10.11588/data/shvino/nzuiy5
title: Compound_121.zip
DOI: 10.11588/data/shvino/mrqtpk
title: Compound_115.zip
DOI: 10.11588/data/shvino/hqdahg
title: Compound_103.zip
DOI: 10.11588/data/shvino/if0xne
title: Compound_125.zip
DOI: 10.11588/data/shvino/occt7b
title: Compound_83.zip
DOI: 10.11588/data/shvino/viu9xa
title: Compound-Dioxol-CH-MS.zip
DOI: 10.11588/data/shvino/0dgbsd
title: Compound-OMe-CH-MS.zip
DOI: 10.11588/data/shvino/7shsok
title: Compound-CH-MS.zip
DOI: 10.11588/data/shvino/d70xz7
title: Compound-Thiophen-MS.zip
DOI: 10.11588/data/shvino/g5zlzr
title: Compound_110.zip
DOI: 10.11588/data/shvino/fgcf0l
title: Compound_106.zip
DOI: 10.11588/data/shvino/ji0z67
title: Compound_66.zip
DOI: 10.11588/data/shvino/shhok8
title: Compound_59.zip
DOI: 10.11588/data/shvino/geugyr
title: Compound_122.zip
DOI: 10.11588/data/shvino/parpoa
title: Compound-Aldehyd-Thio-MS.zip
DOI: 10.11588/data/shvino/yhbjht
title: Compound_72.zip
DOI: 10.11588/data/shvino/weqtc0
title: Compound_89.zip
DOI: 10.11588/data/shvino/cucshp
title: Compound-TIPS-CH-MS.zip