cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25563666
title: <b>Metagenomic insights into microbial structure and metabolism in alpine permafrost on the Tibetan Plateau</b>

description: Permafrost, characterized by its frozen soil, serves as a unique and ecologically significant habitat for diverse microorganisms. Understanding the intricacies of their community structure and functional attributes is crucial for predicting the response of permafrost ecosystems to climate change. However, large-scale evidence regarding microbial profiles and their differences across soil strata remains limited. Here we analyze microbial structure and metabolic potential based on 16S rRNA and metagenomic data obtained from a ∼1,000 km permafrost transect on the Tibetan Plateau. We find that microbial alpha diversity declines, while beta diversity (spatial variation) increases along the soil profile. Microbial assemblages are primarily governed by dispersal limitation and drift, with the importance of drift decreases, and dispersal limitation increases along the soil depth. We also observe that functional genes related to reduction reactions (<i>e.g.</i>, ferric iron reduction, dissimilatory nitrate reduction, denitrification, and polysulfide reduction) are enriched in the permafrost layer. Taxa involving in redox reactions, especially for the alternative electron accepting processes, are more diverse and contribute highly to community-level metabolic profiles in subsurface and permafrost layer, reflecting lower redox potential and more complicated trophic strategies for microorganisms in deeper soils. These findings provide comprehensive insights into the large-scale stratigraphic profiles of microbial community structure and biogeochemical processes and laying the groundwork for future endeavors that elucidate microbial responses to environmental change in permafrost regions.Data structure:├── 16S ├── metadata.txt &lt;--metadata including the climatic, vegetable for samples ├── otus.nwk &lt;--phylogenetic tree for ASVs ├── otutab.txt &lt;--ASV table ├── otutab_rare.txt &lt;--Rarefy ASV table └── taxonomy.txt &lt;--Taxonomic table└── Functional genes ├── eggnog.KEGG_ko.raw.counts.txt &lt;-- KEGG KO table with row counts └── eggnog.KEGG_ko.raw.tpm.txt &lt;-- KEGG KO table with TPM tansformation<br><br>└── Metabolic ├── bin_abundance_table.tab &lt;-- Abundance table for each bin ├── METABOLIC_result.xlsx &lt;-- Summary of the presence/absence of functional genes on each genome ├── MW_score_result.csv &lt;-- Resuts of metabolic weighted scores for the metagenomic assembly genomes └── tax.txt &lt;-- Taxnomic identificcation for each bin<br>└── Supplementary Data ├── Supplementary Data 1.xlsx &lt;-- Characteristics of recovered metagenomic assembly genomes (MAGs) ├── Supplementary Data 2.xlsx &lt;-- Custom selected KEGG genes used to define metabolic pathways └── Supplementary Data 3.xlsx &lt;-- The metabolic profiles of all MAGs annotated by METABOLIC v4.0 <br>
DOI: 10.6084/m9.figshare.25563666.v1
title: <b>Metagenomic insights into microbial structure and metabolism in alpine permafrost on the Tibetan Plateau</b>

description: Permafrost, characterized by its frozen soil, serves as a unique and ecologically significant habitat for diverse microorganisms. Understanding the intricacies of their community structure and functional attributes is crucial for predicting the response of permafrost ecosystems to climate change. However, large-scale evidence regarding microbial profiles and their differences across soil strata remains limited. Here we analyze microbial structure and metabolic potential based on 16S rRNA and metagenomic data obtained from a ∼1,000 km permafrost transect on the Tibetan Plateau. We find that microbial alpha diversity declines, while beta diversity (spatial variation) increases along the soil profile. Microbial assemblages are primarily governed by dispersal limitation and drift, with the importance of drift decreases, and dispersal limitation increases along the soil depth. We also observe that functional genes related to reduction reactions (<i>e.g.</i>, ferric iron reduction, dissimilatory nitrate reduction, denitrification, and polysulfide reduction) are enriched in the permafrost layer. Taxa involving in redox reactions, especially for the alternative electron accepting processes, are more diverse and contribute highly to community-level metabolic profiles in subsurface and permafrost layer, reflecting lower redox potential and more complicated trophic strategies for microorganisms in deeper soils. These findings provide comprehensive insights into the large-scale stratigraphic profiles of microbial community structure and biogeochemical processes and laying the groundwork for future endeavors that elucidate microbial responses to environmental change in permafrost regions.Data structure:├── 16S ├── metadata.txt &lt;--metadata including the climatic, vegetable for samples ├── otus.nwk &lt;--phylogenetic tree for ASVs ├── otutab.txt &lt;--ASV table ├── otutab_rare.txt &lt;--Rarefy ASV table └── taxonomy.txt &lt;--Taxonomic table└── Functional genes ├── eggnog.KEGG_ko.raw.counts.txt &lt;-- KEGG KO table with row counts └── eggnog.KEGG_ko.raw.tpm.txt &lt;-- KEGG KO table with TPM tansformation<br><br>└── Metabolic ├── bin_abundance_table.tab &lt;-- Abundance table for each bin ├── METABOLIC_result.xlsx &lt;-- Summary of the presence/absence of functional genes on each genome ├── MW_score_result.csv &lt;-- Resuts of metabolic weighted scores for the metagenomic assembly genomes └── tax.txt &lt;-- Taxnomic identificcation for each bin<br>└── Supplementary Data ├── Supplementary Data 1.xlsx &lt;-- Characteristics of recovered metagenomic assembly genomes (MAGs) ├── Supplementary Data 2.xlsx &lt;-- Custom selected KEGG genes used to define metabolic pathways └── Supplementary Data 3.xlsx &lt;-- The metabolic profiles of all MAGs annotated by METABOLIC v4.0 <br>
DOI: 10.15468/dl.b5ekjf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Festuca heterophylla Lam.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126278-240321170329656/datasets/export for details.
DOI: 10.15468/dl.uzgzjh
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thecopus secunda (Ridl.) Seidenf."
 ]
}

 The dataset includes 11 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126279-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.czegvy
title: Occurrence Download

description: A dataset containing 373 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Turraea ovata (Cav.) Harms"
 ]
}

 The dataset includes 373 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126280-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.33u2tj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Festuca hirtovaginata (Acht.) Markgr.-Dann.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126282-240321170329656/datasets/export for details.
DOI: 10.15468/dl.qnj23f
title: Occurrence Download

description: A dataset containing 794 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Senna sophera (L.) Roxb."
 ]
}

 The dataset includes 794 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126281-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ekucyk
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thecostele alata (Roxb.) C.S.P.Parish & Rchb.f."
 ]
}

 The dataset includes 103 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126283-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zkn4x2
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Turraea parvifolia Deflers"
 ]
}

 The dataset includes 62 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126284-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7pn749
title: Occurrence Download

description: A dataset containing 10696 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "OccurrenceStatus is Present",
 "TaxonKey is Cecropia Loefl."
 ]
}

 The dataset includes 10696 records from 215 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126276-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tmq87s
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elaphoglossum longissimum (Sodiro) C.Chr."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160745-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nhuh5x
title: Occurrence Download

description: A dataset containing 5307 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia decora Rchb.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5307 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004027-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ryxezw
title: Occurrence Download

description: A dataset containing 4192 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Malvaviscus arboreus Cav."
 ]
}

 The dataset includes 4192 records from 167 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008412-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a8d7uz
title: Occurrence Download

description: A dataset containing 150 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epidendrum radioferens (Ames, F.T.Hubb. & C.Schweinf.) Hágsater"
 ]
}

 The dataset includes 150 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160746-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0dsh6w
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Batasio fasciolatus Ng, 2006"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008412-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h3e3np
title: Occurrence Download

description: A dataset containing 71395 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Institute of Dendrology PAS, Flora of Sudety Mountains"
 ]
}

 The dataset includes 71395 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075841-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxhq7z
title: Occurrence Download

description: A dataset containing 213 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphanamixis borneensis (Miq.) Merr."
 ]
}

 The dataset includes 213 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010872-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6pcj7s
title: Occurrence Download

description: A dataset containing 3386 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ambystoma jeffersonianum (Green, 1827)"
 ]
}

 The dataset includes 3386 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0282072-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.phhd7k
title: Occurrence Download

description: A dataset containing 446 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erythrina mulungu Mart. ex Benth."
 ]
}

 The dataset includes 446 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160747-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2gdjru
title: Occurrence Download

description: A dataset containing 5527 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "TaxonKey is Casuarina glauca Sieber ex Spreng."
 ]
}

 The dataset includes 5527 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008412-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4p7jcf
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia dealbata Link",
 "Year is 1770"
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254731-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9p2pyu
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bruguiera gymnorhiza (Linnaeus, 1753) Sav.",
 "Year 1000-2020"
 ]
}

 The dataset includes 21 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057489-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qqckm3
title: Occurrence Download

description: A dataset containing 593 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tragelaphus scriptus (Pallas, 1766)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 593 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008413-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b0qg7c
title: Occurrence Download

description: A dataset containing 287 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blighia welwitschii (Hiern) Radlk."
 ]
}

 The dataset includes 287 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008413-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.58rkgx
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Rhododendron sperabiloides Tagg & Forrest"
 ]
}

 The dataset includes 32 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010933-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9rzsws
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acropora bushyensis Veron & Wallace, 1984"
 ]
}

 The dataset includes 119 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134874-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ircqal
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hypochaeris elata (Wedd.) Griseb.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 131 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008413-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k7y9c3
title: Occurrence Download

description: A dataset containing 6822 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is A national macroinvertebrate dataset collected for the biomonitoring of Ireland’s river network, 2007–2018 (EPA)",
 "Issue is Taxon match none"
 ]
}

 The dataset includes 6822 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004030-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qnku3j
title: Occurrence Download

description: A dataset containing 1827944 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Meise Botanic Garden Herbarium (BR)"
 ]
}

 The dataset includes 1827944 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0195327-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g43xj8
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.46_1",
 "TaxonKey is Microtus pinetorum (Le Conte, 1830)",
 "Year 2014-2024"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160748-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mpurkb
title: Occurrence Download

description: A dataset containing 4498 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Flora of Japan Specimen Database"
 ]
}

 The dataset includes 4498 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008413-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kqbm5a
title: Occurrence Download

description: A dataset containing 4859 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peganum harmala L."
 ]
}

 The dataset includes 4859 records from 194 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0282074-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.26cd3g
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Rhododendron temenium var. dealbatum (Cowan) D.F.Chamb."
 ]
}

 The dataset includes 38 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010942-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jnvxdx
title: Occurrence Download

description: A dataset containing 1303983 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 {
 "or" : [
 "InstitutionCode is inecol",
 "InstitutionCode is ibunam"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1303983 records from 324 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008413-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vtauxt
title: Occurrence Download

description: A dataset containing 4244465 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cygnus olor (J.F.Gmelin, 1789))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4244465 records from 1250 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0168727-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/9jys-hpyb
title: Measurement of Particle_number_concentration at Mauna Loa

description: Measurement of Particle_number_concentration at Mauna Loa
DOI: 10.48597/9pxg-f2ng
title: Measurement of Inorganics in air and particle phase at Råö

description: Measurement of Inorganics in air and particle phase at Råö
DOI: 10.48597/9vp2-ze3k
title: Measurement of Particle_number_concentration at Mauna Loa

description: Measurement of Particle_number_concentration at Mauna Loa
DOI: 10.48597/9xr7-fjbe
title: Measurement of Particle_number_concentration at Mauna Loa

description: Measurement of Particle_number_concentration at Mauna Loa
DOI: 10.14473/csda/erqsvt/zxpwvd
title: K_V1212.pdf

description: Karty
DOI: 10.48597/a4xk-d38p
title: Measurement of Particle_number_concentration at Mauna Loa

description: Measurement of Particle_number_concentration at Mauna Loa
DOI: 10.14473/csda/erqsvt/kl1ezl
title: OM_V1212.pdf

description: Ostatní materiály
DOI: 10.48597/a5tj-2rnn
title: Measurement of Particle_number_concentration at Mauna Loa

description: Measurement of Particle_number_concentration at Mauna Loa
DOI: 10.14473/csda/erqsvt/0iuvqn
title: TI_V1212.pdf

description: Technická informace