cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.r84n5/3
title: Aiptasia-specific SCAR marker nucleotide sequence alignment.

description: 2,026 bp of concatenated nucleotide sequences from four Aiptasia-specific SCAR markers.
DOI: 10.5061/dryad.rm5v5/18
title: Supplemental Figure 18: Bin mapping results for CompPri.

description: Supplemental Figure 18: Bin mapping results for CompPri. See Supplemental Dataset 7 online for trait details and Supplemental Figure 15 online for legend.
DOI: 10.5061/dryad.rm5v5/19
title: Supplemental Figure 19: Bin mapping results for CompRachis.

description: Supplemental Figure 19: Bin mapping results for CompRachis. See Supplemental Dataset 7 online for trait details and Supplemental Figure 15 online for legend.
DOI: 10.5061/dryad.rm5v5/20
title: Supplemental Figure 20: Bin mapping results for CompSec.

description: Supplemental Figure 20: Bin mapping results for CompSec. See Supplemental Dataset 7 online for trait details and Supplemental Figure 15 online for legend.
DOI: 10.5061/dryad.rm5v5/21
title: Supplemental Figure 21: Bin mapping results for CotPaveAR.

description: Supplemental Figure 21: Bin mapping results for CotPaveAR. See Supplemental Dataset 7 online for trait details and Supplemental Figure 15 online for legend.
DOI: 10.5061/dryad.rm5v5/22
title: Supplemental Figure 22: Bin mapping results for CotPaveArea.

description: Supplemental Figure 22: Bin mapping results for CotPaveArea. See Supplemental Dataset 7 online for trait details and Supplemental Figure 15 online for legend.
DOI: 10.5061/dryad.rm5v5/23
title: Supplemental Figure 23: Bin mapping results for CotPaveCirc.

description: Supplemental Figure 23: Bin mapping results for CotPaveCirc. See Supplemental Dataset 7 online for trait details and Supplemental Figure 15 online for legend.
DOI: 10.5061/dryad.rm5v5/24
title: Supplemental Figure 24: Bin mapping results for CotPaveCnt.

description: Supplemental Figure 24: Bin mapping results for CotPaveCnt. See Supplemental Dataset 7 online for trait details and Supplemental Figure 15 online for legend.
DOI: 10.5061/dryad.rm5v5/26
title: Supplemental Figure 26: Bin mapping results for CotPaveSolid.

description: Supplemental Figure 26: Bin mapping results for CotPaveSolid. See Supplemental Dataset 7 online for trait details and Supplemental Figure 15 online for legend.
DOI: 10.5061/dryad.sp521/1
title: Functions to perform posterior predictive model fitting

description: A series of functions written in the R language for performing posterior predictive simulation under Brownian motion and Early burst models of trait evolution.
DOI: 10.5061/dryad.sp521/2
title: cetacean analyses

description: R code to perform posterior predictive and maximum likelihood model fitting to a cetacean body length dataset
DOI: 10.5061/dryad.sp521/3
title: fitContinuous_modified_cetaceans

description: A modified version of the fitContinuous function from the geiger library that allows a model to be fitted to a comparative dataset wherein the Brownian rate is permitted to vary along one, pre-specified internal edge of the phylogeny
DOI: 10.5061/dryad.sp521/4
title: Cetacean phylogeny

description: time calibrated phylogeny of cetaceans from Slater et al (Proc Roy Soc B 2010) and used for posterior predictive model fitting
DOI: 10.5061/dryad.sp521/5
title: cetacean body length data

description: cetacean body length data from Slater et al (Proc Roy Soc B 2010) and used for posterior predictive model fitting
DOI: 10.5061/dryad.sp521/6
title: Slater_Pennel_supplement

description: Supplementary results for posterior predictive tests performed on simulated data.
DOI: 10.5061/dryad.tt208/1
title: Morphological data
DOI: 10.5061/dryad.tt208/2
title: Pedigree data
DOI: 10.5061/dryad.tt208/3
title: Dimorphism data
DOI: 10.5061/dryad.v7m3q/3
title: Fig.4. Larval settlement rates on adult oysters restricted from feeding.

description: This data was collected in a controlled laboratory experiment, using 8 L replicate buckets.  Excel software was used to create this data. The number of larvae settled on individual adult oysters is recorded. Adult oyster substrates were one of two species: conspecific Sydney rock oysters or non native Pacific oysters. Adult oyster were restricted from feeding by banding closed, left to feed normally with no band, or left to feed with a loose band to test effects of the band on larval settlement (band control). Data is summarised as means and standard error of the mean for each treatment.
DOI: 10.5061/dryad.vn541ms8/4
title: forked
DOI: 10.5061/dryad.vn541ms8/5
title: white
DOI: 10.5061/dryad.vn541ms8/6
title: yellow
DOI: 10.5061/dryad.2hb12/1
title: Fukasawa et al. dataset

description: This zip file contains a dataset file (fukasawa2013data.csv) used to estimate the Bayesian state-space model, and a Shapefile (a set of 5 files named "fukasawa2013grid.***") which includes polygon data of the dataset location.
DOI: 10.5061/dryad.2vk43/4
title: Unilateral OVX hatchling size

description: Mass and SVL of hatchlings, used to test for differential reproductive investment by captive 1OVX and SHAM females.
DOI: 10.5061/dryad.2vm70/10
title: Labeled RandTag Widefield Images (Plasma Membrane Subset)

description: This file is part of the widefield labeled dataset
DOI: 10.5061/dryad.2vm70/11
title: Labeled RandTag Widefield Images (ER Subset)

description: This is part of the labeled widefield dataset.
DOI: 10.5061/dryad.2vm70/4
title: Labeled RandTag Widefield Images (Cytoskeleton Subset)

description: This is part of the labeled widefield dataset.
DOI: 10.5061/dryad.2vm70/5
title: Labeled RandTag Widefield Images (Nucleoli Subset)

description: This is part of the labeled widefield dataset.
DOI: 10.5061/dryad.2vm70/6
title: Labeled RandTag Widefield Images (Golgi Subset)

description: This file is part of the labeled widefield dataset.
DOI: 10.5061/dryad.2vm70/7
title: Labeled RandTag Widefield Images (Mitochondria Subset)

description: Part of widefield labeled subset
DOI: 10.5061/dryad.2vm70/8
title: Labeled RandTag Widefield Images (Cytoplasmic Subset)

description: This is part of the labeled widefield dataset.
DOI: 10.5061/dryad.2vm70/9
title: Labeled RandTag Widefield Images (Lysosomal Subset)

description: This is part of the labeled widefield dataset
DOI: 10.5061/dryad.3hq09/1
title: De-identified_spreadsheet

description: Excel file containing original detailed data obtained through survey
DOI: 10.5061/dryad.45v38/1
title: Pollen deposited on stigmas in cross and self polllinations and pollen load on anthers

description: Three tables are provided. Table 1 shows number of pollen grains deposited on stigmas in disassortative and assortative crosses between floral morphs of style-dimorphic Narcissus papyraceus, mediated by insects either with long or short tongue. Table 2 provides number of self-pollen grains deposited on stigmas after a single visit of each insect typpe in each floral morph. Table 3 gives the amount of pollen on anthers of either unvisited flowers and flowers single-visited by each insect type.
DOI: 10.5061/dryad.49mf6/1
title: Puniamoorthy_et _al_2012_PrePost_MorphologyData

description: Raw data for morphological variables described in paper (incl. measurements and calculations of testes length, width, volume + spermathecal diameter, volume).
DOI: 10.5061/dryad.49mf6/2
title: Puniamoorthy_et _al_2012_PrePost_BehaviorData

description: Raw data for behavior variables (incl. mating frequencies, no. of mounts, courtship displays, copulation duration etc.)
DOI: 10.5061/dryad.4m0c3/1
title: Maestre_GCB12

description: Biomass and nutrient data from the harvesting of the experiment
DOI: 10.5061/dryad.5f3f0/1
title: Immler et al_Biol Lett_data

description: Dataset containing the data for analysis on time from fertilisation until hatching, larval size at hatching and growth rate for all experiments described in the article.
DOI: 10.5061/dryad.67kq8346/1
title: Adineta_65

description: phylogenetic tree of the genus Adineta
DOI: 10.5061/dryad.67kq8346/2
title: Brachionus_calyciflorus_12

description: phylogenetic tree of the species complex Brachionus calyciflorus
DOI: 10.5061/dryad.67kq8346/3
title: Brachionus_plicatilis_36

description: phylogenetic tree of the species complex Brachionus plicatilis
DOI: 10.5061/dryad.67kq8346/4
title: Philodina_73

description: phylogenetic tree of the genus Philodina
DOI: 10.5061/dryad.67kq8346/5
title: Rotaria_rotatoria_78

description: phylogenetic tree of the species complex Rotaria rotatoria
DOI: 10.5061/dryad.67kq8346/6
title: Rotaria_sordida_19

description: phylogenetic tree of the species complex Rotaria sordida
DOI: 10.5061/dryad.67kq8346/7
title: Synchaeta_15

description: phylogenetic tree of the genus Synchaeta
DOI: 10.5061/dryad.67kq8346/8
title: Testudinella_11

description: phylogenetic tree of the genus Testudinella
DOI: 10.5061/dryad.67md0/1
title: Malone_etal_2014_Evolution_SuperMasterFile

description: This is the master file that contains information about the acoustic stimuli used, cross correlations, and ecological data.
DOI: 10.5061/dryad.6ph57/7
title: GENELAND genotype input file for modern samples
DOI: 10.5061/dryad.74k3m/1
title: Nussey 2014 - ProcRSocB - Dataframe+Readme

description: Dataframe used in analyses and readme file in Excel format
DOI: 10.5061/dryad.b4783/5
title: Weird_Bear_Creek_Kennedy_2010

description: USFWS report on the history of Bear Creek cutthroat trout population.
DOI: 10.5061/dryad.b4783/6
title: All_subspecies_tree_430bp

description: alignment of unique haplotypes present in subspecies of cutthroat trout (Oncorhynchus clarkii).  The sequence data includes a concatenation of two non-continuous portions of the ND2 gene and one section of COI gene.  For some subspecies, sequence data for the COI gene was not available. Sequences originally published in Loxterman & Keeley 2012 include genbank #'s JQ747557–JQ747623. Sequences originally published in Metcalf et al. 2007 include genbank #'s EF673223 - EF673276. All_subspecies_unique.nex, All_subspecies_unique_PhyML.tre, All_subspecies_unique_BEAST.tre
DOI: 10.5061/dryad.b4783/7
title: ND2 haplotype table for 53 modern populations

description: We sequenced a 648 or 889 base pair region of the ND2 gene for at least 10 individuals from 53 contemporary populations. This table shows ND2 haplotypes present in each population sampled, number of fish sampled per population, and the number of fish belonging to each haplotype.  Haplotypes are either defined by a genbank number and an abbreviated short name that is used by Parks and Wildlife (KBRkey). Major mtDNA lineage designations include (GCR = Gunnison/Colorado, YMP = Yampa, SP = South Platte, RG = Rio Grande, YS= Yellowstone cutthroat trout and RB = Rainbow trout.
DOI: 10.5061/dryad.br63t4d0/1
title: Polyphen_results
DOI: 10.5061/dryad.df119/1
title: Ims et al. BiolLetter-Data

description: Predation on artificial nests in spring and abundance of three species of small rodents (the autumn before) in low-arctic tundra over 3 consecutive years.
DOI: 10.5061/dryad.fc109/1
title: fullData_Dryad

description: See attached file for information about variables.
DOI: 10.5061/dryad.fn2rg/1
title: IGPD_alignment

description: Alignment of land plant imidazoleglycerol-phosphate dehydratase (IGPD). Alphanumeric codes following species names are the four-letter 1KP transcriptome identifiers, Genbank accessions or both.
DOI: 10.5061/dryad.fn2rg/2
title: IGPD_ML_tree_raxml

description: The maximum likelihood tree inferred from "IGPD_alignment.fas", using RAxML with 100 random starting trees. We partitioned the data by codon position, with each partition given a GTR+Γ+I model as suggested by PartitionFinder under the Akaike Information Criterion. Alphanumeric codes following species names are the four-letter 1KP transcriptome identifiers, Genbank accessions or both.
DOI: 10.5061/dryad.fn2rg/3
title: IGPD_MLBS_tree_raxml

description: The maximum likelihood bootstrapping trees from "IGPD_alignment.fas", using RAxML (1000 replicates). We partitioned the data by codon position, with each partition given a GTR+Γ+I model as suggested by PartitionFinder under the Akaike Information Criterion. Alphanumeric codes following species names are the four-letter 1KP transcriptome identifiers, Genbank accessions or both.
DOI: 10.5061/dryad.fn2rg/4
title: PHOT_alignment

description: Alignment of plant phototropin and neochrome, containing 163 sequences from 106 species. We only included the conserved domains (i.e., LOV1, LOV2 and STK); the domain boundaries were identified by querying each scaffold against the NCBI Conserved Domain Database. Each domain was separately aligned (based on the amino acid sequences) using Muscle, and then concatenated. Alphanumeric codes following species names are the four-letter 1KP transcriptome identifiers, Genbank accessions or both.
DOI: 10.5061/dryad.fn2rg/5
title: PHOT_ML_tree_garli

description: The maximum likelihood tree inferred from "PHOT_alignment.fas", using Garli with genthreshfortopoterm set to 1,000,000 and 8 independent runs. We partitioned the data by codon position, with each partition given a GTR+Γ+I model as suggested by PartitionFinder under the Akaike Information Criterion. Alphanumeric codes following species names are the four-letter 1KP transcriptome identifiers, Genbank accessions or both.
DOI: 10.5061/dryad.fn2rg/6
title: PHOT_ML_tree_codonPhyML

description: The maximum likelihood tree inferred from "PHOT_alignment.fas", using CodonPhyML. We used the GY model with four categories of non-synonymous/synonymous substitution rate ratios drawn from the discrete gamma distribution, and codon frequencies were estimated from the data under the F3X4 model. The tree topology search was done using the NNI approach, and branch support was estimated using the SH-like aLRT method. Alphanumeric codes following species names are the four-letter 1KP transcriptome identifiers, Genbank accessions or both.
DOI: 10.5061/dryad.fn2rg/7
title: PHOT_ML_tree_nhPhyml

description: The maximum likelihood tree inferred from "PHOT_alignment.fas", using nhPhyML. The analysis was carried out with ten discrete categories of GC equilibrium frequencies, and the required starting tree was the best tree from the Garli analysis ("PHOT_ML_tree_garli.tre"). Alphanumeric codes following species names are the four-letter 1KP transcriptome identifiers, Genbank accessions or both.
DOI: 10.5061/dryad.fn2rg/8
title: PHOT_MLBS_tree_raxml

description: The maximum likelihood bootstrapping trees from "PHOT_alignment.fas", using RAxML (1000 replicates). We partitioned the data by codon position, with each partition given a GTR+Γ+I model as suggested by PartitionFinder under the Akaike Information Criterion. Alphanumeric codes following species names are the four-letter 1KP transcriptome identifiers, Genbank accessions or both.
DOI: 10.5061/dryad.fr0pd/1
title: gh raw data in fasta format

description: This fasta file contains all the different sequences amplified with the gh primer pair, sorted by decreasing order of count, and with the information about the fecal samples they come from.
DOI: 10.5061/dryad.fr0pd/2
title: ITSAst raw data in fasta format

description: This fasta file contains all the different sequences amplified with the ITSAst primer pair, sorted by decreasing order of count, and with the information about the fecal samples they come from.
DOI: 10.5061/dryad.fr0pd/3
title: ITSCyp raw data in fasta format

description: This fasta file contains all the different sequences amplified with the ITSCyp primer pair, sorted by decreasing order of count, and with the information about the fecal samples they come from.
DOI: 10.5061/dryad.jh58p/1
title: Graphs_Christianen_PRSB

description: Data Fig. 1: Gap cover and seagrass biomass between 2003-2011.
DOI: 10.5061/dryad.jh58p/2
title: Fig4_Christianen_PRSB

description: R script and data Fig. 4:Graphical comparison of two fully parameterized models describing the balance between green turtle grazing and seagrass regrowth, and its implications for the response of seagrass to increased turtle density and grazing strategy.
DOI: 10.5061/dryad.jh58p/3
title: Fig_ESM_Christianen_PRSB

description: ESM Figure S3. Seagrass biomass  and production for gaps of different age or different stage of regrowth.
DOI: 10.5061/dryad.mg606/2
title: Ligia_oceanica_16S_haplotypes

description: 16S rDNA haplotypes of the analysed isopod specimens.
DOI: 10.5061/dryad.mg606/3
title: Ligia_oceanica_COI_haplotypes

description: COI haplotypes of the analysed isopod specimens.
DOI: 10.5061/dryad.mg606/4
title: Supporting_Information_Figure_S2

description: Supporting Information Figure S2. Geographical distributions of Wolbachia-infected specimens of Ligia oceanica (black, in %). The total number of specimens per population is given in the white boxes.
DOI: 10.5061/dryad.mg606/5
title: Supporting_Information_Table_S1

description: Supporting Information Table S1. Table of all specimens used in this study, including individual codes, GenBank accession numbers (left) and haplotype numbers (right) of both mitochondrial gene fragments, collection sites with coordinates and dates, gender and status of Wolbachia infection of the analysed isopod specimens. Specimens are marked with asterisks when nuclear V7 regions were additionally analysed (accession number JQ814405).
DOI: 10.5061/dryad.mg606/6
title: AMOVA_COI_data

description: Input file of COI data for the AMOVA analysis using Arlequin 3.5.1.2 (Excoffier & Lischer, 2010).
DOI: 10.5061/dryad.n17d2/1
title: individual_genotypes

description: convert format
DOI: 10.5061/dryad.nq816/1
title: Pringle.etal.PlosBiology

description: Raw data files and ReadMe file.
DOI: 10.5061/dryad.r0056/38
title: Tu.Homo_sapiens_nucl

description: Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample Tu.
DOI: 10.5061/dryad.r0056/39
title: TuRE.Homo_sapiens_nucl

description: Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample TuRE.
DOI: 10.5061/dryad.r0056/40
title: Ty.Homo_sapiens_nucl

description: Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample Ty.
DOI: 10.5061/dryad.r0056/41
title: TyRE.Homo_sapiens_nucl

description: Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample TyRE.
DOI: 10.5061/dryad.r0056/42
title: Ya.Homo_sapiens_nucl

description: Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample Ya.
DOI: 10.5061/dryad.r0056/43
title: YaRE.Homo_sapiens_nucl

description: Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample YaRE.
DOI: 10.5061/dryad.r0056/44
title: BaARE_metaphlan

description: MetaPhlAn microbial profile for sample BaARE.
DOI: 10.5061/dryad.r0056/45
title: BaB_metaphlan

description: MetaPhlAn microbial profile for sample BaB.
DOI: 10.5061/dryad.r8f6r/1
title: Technical features of microsatellite primers

description: Technical features of microsatellite primers and the diversity parameters for Ficus citrifolia P. Miller and Ficus eximia Schott populations, in São Paulo State, Southeast Brazil. Ta, annealing temperature (ºC) for F. citrifolia (1) and F. eximia (2); R, allele size range in base pairs (bp); nA, observed number of alleles; HE and HO, expected and observed heterozygosity, respectively; f, fixation index calculated as 1 – HO/HE.
DOI: 10.5061/dryad.rm5v5/25
title: Supplemental Figure 25: Bin mapping results for CotPaveRound.

description: Supplemental Figure 25: Bin mapping results for CotPaveRound. See Supplemental Dataset 7 online for trait details and Supplemental Figure 15 online for legend.
DOI: 10.5061/dryad.rm5v5/27
title: Supplemental Figure 27: Bin mapping results for CotStom.

description: Supplemental Figure 27: Bin mapping results for CotStom. See Supplemental Dataset 7 online for trait details and Supplemental Figure 15 online for legend.
DOI: 10.5061/dryad.rm5v5/28
title: Supplemental Figure 28: Bin mapping results for CotStomInd.

description: Supplemental Figure 28: Bin mapping results for CotStomInd. See Supplemental Dataset 7 online for trait details and Supplemental Figure 15 online for legend.
DOI: 10.5061/dryad.rm5v5/29
title: Supplemental Figure 29: Bin mapping results for FlowTime.

description: Supplemental Figure 29: Bin mapping results for FlowTime. See Supplemental Dataset 7 online for trait details and Supplemental Figure 15 online for legend.
DOI: 10.5061/dryad.rm5v5/30
title: Supplemental Figure 30: Bin mapping results for LatLfSize.

description: Supplemental Figure 30: Bin mapping results for LatLfSize. See Supplemental Dataset 7 online for trait details and Supplemental Figure 15 online for legend.
DOI: 10.5061/dryad.rm5v5/31
title: Supplemental Figure 31: Bin mapping results for LatPC1.

description: Supplemental Figure 31: Bin mapping results for LatPC1. See Supplemental Dataset 7 online for trait details and Supplemental Figure 15 online for legend.
DOI: 10.5061/dryad.rm5v5/32
title: Supplemental Figure 32: Bin mapping results for LatPC2.

description: Supplemental Figure 32: Bin mapping results for LatPC2. See Supplemental Dataset 7 online for trait details and Supplemental Figure 15 online for legend.
DOI: 10.5061/dryad.rm5v5/33
title: Supplemental Figure 33: Bin mapping results for LatPC3.

description: Supplemental Figure 33: Bin mapping results for LatPC3. See Supplemental Dataset 7 online for trait details and Supplemental Figure 15 online for legend.
DOI: 10.5061/dryad.rm5v5/34
title: Supplemental Figure 34: Bin mapping results for LatPC4.

description: Supplemental Figure 34: Bin mapping results for LatPC4. See Supplemental Dataset 7 online for trait details and Supplemental Figure 15 online for legend.
DOI: 10.5061/dryad.vq2m6/1
title: Quantitative morphological data, 124 primrose species
DOI: 10.5061/dryad.vq2m6/2
title: Binary scoring of heterostyly, 124 taxa dataset

description: Contains scoring (heterostyly, homostyly) of breeding system for the 124 taxa of the Primula clade
DOI: 10.5061/dryad.vq2m6/3
title: Binary scoring of heterostyly, 265 Primulaceae taxa

description: Contains scoring of breeding system for the 265 taxa of Primulaceae s.str.
DOI: 10.5061/dryad.vq2m6/4
title: Species means data, 124 primrose species

description: Contains species means, calculated from the data in file "morphoAlldata_124taxa_Dryad.txt".	Rows represent species with their means. Column "n_obs" is the number of observations from which the means were calculated. Other columns as for "morphoAlldata_124taxa_Dryad.txt".
DOI: 10.5061/dryad.vq2m6/5
title: Primulaceae phylogeny 265 taxa chronogram

description: Contains maximum clade credibility tree with median node heights of 265 Primulaceae taxa, based on a 3 locus cpDNA dataset. Branchlengths in absolute time (MY), estimated using the UCLN clock model in BEAST. Tree is taken from the study of De Vos JM, Hughes C, Schneeweiss GM, Moore BR, Conti E. Heterostyly accelerates diversification via reduced extinction in Darwin’s primroses. Submitted manuscript. TreeBASE reference TB2:S14824
DOI: 10.5061/dryad.vq2m6/6
title: Primula phylogeny, 124 taxa chronogram

description: Contains the phylogenetic tree for the 124 taxa of the Primula clade, obtained by pruning branches from the 265 taxon tree.
DOI: 10.5061/dryad.0179t/8
title: Reference sequences for museum-1

description: Reference sequences for sample museum-1. Use with file 'Alignment of merged reads for museum-1'.
DOI: 10.5061/dryad.0875q1v2/1
title: house_loss

description: Covariates measured at each of 499 houses within wildfires that burnt on 7 February 2009 in Victoria, Australia