cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh2073428.08fu
title: SH2073428.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2645891.08fu
title: SH2645891.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2645892.08fu
title: SH2645892.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2073429.08fu
title: SH2073429.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2073430.08fu
title: SH2073430.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2073431.08fu
title: SH2073431.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.20545693.v1
title: Additional file 1 of Effect of AKT silence on malignant biological behavior of renal cell carcinoma cells

description: Additional file 1. Data and analysis of this study.
DOI: 10.6084/m9.figshare.6390050
title: Additional file 12: of Comparative analysis of plant MKK gene family reveals novel expansion mechanism of the members and sheds new light on functional conservation

description: Table S7. List of duplicated genes assigned to segmental duplication in plant genome, as detected by CoGe SynMap analysis. (XLSX 26 kb)
DOI: 10.5281/zenodo.10635565
title: 3D Electron Diffraction data of GSF IC-I

description: 3D electron diffraction (3D ED) data of griseofulvin (GSF) inclusion complex with polyethylene glycol (PEG) form I (GSF IC-I) collected automatically using software EPU-D at 100 K on a ThermoFisher Titan Krios (300 kV) equipped with a CETA-D detector.

A total of 231 datasets were collected from a sample containing multiple phases of GSF in 2 days. Crystal identification and selection were performed by an operator while 3D ED data collection was carried out fully automatically. Data was processed automatically by software package edtools (https://doi.org/10.5281/zenodo.6953489) using XDS (https://doi.org/10.1107/S0907444909047337). A hierarchical clustering analysis (HCA) algorithm implemented in edtools was used to cluster the datasets belonging to the same phase through the Euclidean distance between the unit cell parameters. Out of the 231 datasets collected, 15 datasets were idneitified to be the GSF IC-I phase.
DOI: 10.5281/zenodo.10635566
title: 3D Electron Diffraction data of GSF IC-I

description: 3D electron diffraction (3D ED) data of griseofulvin (GSF) inclusion complex with polyethylene glycol (PEG) form I (GSF IC-I) collected automatically using software EPU-D at 100 K on a ThermoFisher Titan Krios (300 kV) equipped with a CETA-D detector.

A total of 231 datasets were collected from a sample containing multiple phases of GSF in 2 days. Crystal identification and selection were performed by an operator while 3D ED data collection was carried out fully automatically. Data was processed automatically by software package edtools (https://doi.org/10.5281/zenodo.6953489) using XDS (https://doi.org/10.1107/S0907444909047337). A hierarchical clustering analysis (HCA) algorithm implemented in edtools was used to cluster the datasets belonging to the same phase through the Euclidean distance between the unit cell parameters. Out of the 231 datasets collected, 15 datasets were idneitified to be the GSF IC-I phase.
DOI: 10.6084/m9.figshare.6390050.v1
title: Additional file 12: of Comparative analysis of plant MKK gene family reveals novel expansion mechanism of the members and sheds new light on functional conservation

description: Table S7. List of duplicated genes assigned to segmental duplication in plant genome, as detected by CoGe SynMap analysis. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.24073620
title: Macaque_Skipping_MIIIa

description: The biomechanical data on skipping macaques entail a table with derived parameters for each selected trial. For each trial the calculated joint rotation angles are given. An information file gives further details.Preliminary title of the publication to be submitted:Differential leg and trunk operation during skipping without and with hurdles in bipedal macaque (<i>Macaca fuscata</i>, Cercopithecidae), Reinhard Blickhan, Emanuel Andrada, Eishi Hirasaki, Naomichi Ogihara
DOI: 10.6084/m9.figshare.24073620.v1
title: Macaque_Skipping_MIIIa

description: The biomechanical data on skipping macaques entail a table with derived parameters for each selected trial. For each trial the calculated joint rotation angles are given. An information file gives further details.Preliminary title of the publication to be submitted:Differential leg and trunk operation during skipping without and with hurdles in bipedal macaque (<i>Macaca fuscata</i>, Cercopithecidae), Reinhard Blickhan, Emanuel Andrada, Eishi Hirasaki, Naomichi Ogihara
DOI: 10.6084/m9.figshare.6390164.v1
title: Additional file 21: of Comparative analysis of plant MKK gene family reveals novel expansion mechanism of the members and sheds new light on functional conservation

description: Table S8. A lists of the RT-qPCR primers for the MAPKK genes of B. distachyon. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.19497644
title: Numerical simulation of a cyclone separator to recycle the active components of waste lithium batteries

description: In this paper, cyclone separator is proposed for the first time to separate particles according to density, and it is applied to the recovery of lithium iron phosphate (LFP) from spent lithium battery materials for the first time. The effect of the flow field on the motion of injected particles in a cyclone separator is studied by means of computational fluid dynamics (CFD). It is found that there is a classification phenomenon caused by the difference in the particle densities and the separation process is simulated accordingly. The results show that 60% LiFePO4 in the original feed can be separated after 7 separations, and the mass purity is 91%, with 7% Al and 2% Fe under instantaneous surface injection conditions. Compared with the original feed, LFP is effectively recycled. After 15 separations, the efficiency increases to 76%. Under simulated continuous injection conditions, the separation efficiency of LFP is 61.22% after 20 simulated separations, and the mass purities of the separated products are 92.53% LFP, 6.92% Al, 0.44% Fe and 0.11% Cu. Compared with the traditional method, the new method has advantages of low energy consumption, low cost, theoretically no pollution, and great development potential.
DOI: 10.6084/m9.figshare.6390143.v1
title: Additional file 2: of The Ramazzini Institute 13-week pilot study on glyphosate and Roundup administered at human-equivalent dose to Sprague Dawley rats: effects on the microbiome

description: 16S OTU table in biom format. (BIOM 6871Â kb)
DOI: 10.6084/m9.figshare.6390221
title: Additional file 4: of Comparative analysis of plant MKK gene family reveals novel expansion mechanism of the members and sheds new light on functional conservation

description: Table S3. Table representing molecular mass (in kDa) and isoelectric point of different MAPKK genes from 51 plant species identified during this study. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.6390143
title: Additional file 2: of The Ramazzini Institute 13-week pilot study on glyphosate and Roundup administered at human-equivalent dose to Sprague Dawley rats: effects on the microbiome

description: 16S OTU table in biom format. (BIOM 6871Â kb)
DOI: 10.6084/m9.figshare.6390221.v1
title: Additional file 4: of Comparative analysis of plant MKK gene family reveals novel expansion mechanism of the members and sheds new light on functional conservation

description: Table S3. Table representing molecular mass (in kDa) and isoelectric point of different MAPKK genes from 51 plant species identified during this study. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.6390164
title: Additional file 21: of Comparative analysis of plant MKK gene family reveals novel expansion mechanism of the members and sheds new light on functional conservation

description: Table S8. A lists of the RT-qPCR primers for the MAPKK genes of B. distachyon. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.7963268
title: MOESM3 of Selection and validation of reference genes for quantitative expression analysis of miRNAs and mRNAs in Poplar

description: Additional file 3: Table S1. The average of Ct values in different tissues during plant and AR regeneration of Poplar. Table S2. The normalized expression values of 14 candidate reference genes in various vegetative and reproductive tissues at different developmental stages of Populus tremula.
DOI: 10.17608/k6.auckland.13206026.v2
title: Hadden Little penguin micro CT IKI stained head

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.<br><br><br>
DOI: 10.6084/m9.figshare.22639552
title: Additional file 4 of Excessive exogenous cholesterol activating intestinal LXRα-ABCA1/G5/G8 signaling pathway can not reverse atherosclerosis in ApoE−/− mice

description: Additional file 4. Statistics
DOI: 10.6084/m9.figshare.7963268.v1
title: MOESM3 of Selection and validation of reference genes for quantitative expression analysis of miRNAs and mRNAs in Poplar

description: Additional file 3: Table S1. The average of Ct values in different tissues during plant and AR regeneration of Poplar. Table S2. The normalized expression values of 14 candidate reference genes in various vegetative and reproductive tissues at different developmental stages of Populus tremula.
DOI: 10.6084/m9.figshare.19497644.v1
title: Numerical simulation of a cyclone separator to recycle the active components of waste lithium batteries

description: In this paper, cyclone separator is proposed for the first time to separate particles according to density, and it is applied to the recovery of lithium iron phosphate (LFP) from spent lithium battery materials for the first time. The effect of the flow field on the motion of injected particles in a cyclone separator is studied by means of computational fluid dynamics (CFD). It is found that there is a classification phenomenon caused by the difference in the particle densities and the separation process is simulated accordingly. The results show that 60% LiFePO4 in the original feed can be separated after 7 separations, and the mass purity is 91%, with 7% Al and 2% Fe under instantaneous surface injection conditions. Compared with the original feed, LFP is effectively recycled. After 15 separations, the efficiency increases to 76%. Under simulated continuous injection conditions, the separation efficiency of LFP is 61.22% after 20 simulated separations, and the mass purities of the separated products are 92.53% LFP, 6.92% Al, 0.44% Fe and 0.11% Cu. Compared with the traditional method, the new method has advantages of low energy consumption, low cost, theoretically no pollution, and great development potential.
DOI: 10.6084/m9.figshare.6390518.v1
title: Additional file 4: of Gene expression profiling of 1200 pancreatic ductal adenocarcinoma reveals novel subtypes

description: Table S2. Confusion Matrices in internal training and validation sets. (XLS 25 kb)
DOI: 10.17608/k6.auckland.13206026.v3
title: Hadden Little penguin micro CT IKI stained head

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.<br><br><br>
DOI: 10.34740/kaggle/dsv/7590951
title: Forex Exchange Rates Since 2004 (Updated Daily)
DOI: 10.6084/m9.figshare.20545831
title: Additional file 3 of Biosynthetic mechanisms of isoflavone accumulation affected by different growth patterns in Astragalus mongholicus products

description: Additional file 3. DESeq.A6_vs_B2.
DOI: 10.6084/m9.figshare.20545831.v1
title: Additional file 3 of Biosynthetic mechanisms of isoflavone accumulation affected by different growth patterns in Astragalus mongholicus products

description: Additional file 3. DESeq.A6_vs_B2.
DOI: 10.6084/m9.figshare.7701056
title: thermal tolerance plasticity in Chagas disease vectors.xlsx

description: <i>Each treatment consisted of </i><i>exposing </i><i>5th instar</i><i>nymphs</i><i> to a certain environmental temperature (14, 21, 28 or 35°C) for a week i</i><i>n a chamber</i><i> under a 12:12 photoperiod (light on 9:00 am)</i><i>. </i><i>On the 7th day, critical thermal maxima (CTmax), critical thermal minimum (CTmin) or</i><i>chill-coma recovery time (CCRT), were determined as response variables. </i><i>CTmax was considered as the temperature at which insects lose</i><i> locomotor activity. </i><i>CTmin was considered as the temperature at which insects loose coordinated muscular </i><i>function. </i><i>To determine CCRT </i><i>specimens were placed in an adiabatic container with liquid water and ice (ca. 0°C) for </i><i>one hour. Then, t</i><i>he time elapsed until insects turn round from a ventral side up position was recorded. </i><i>Insects that did not recover after one hour were designated as “non-</i><i>recovered”.</i>
DOI: 10.6084/m9.figshare.7963316.v1
title: Additional file 1: of Reporting quality of pilot clinical trials in chronic kidney disease patients on hemodialysis: a methodological survey

description: Pilot clinical trials in chronic kidney disease patients on hemodialysis. The sample of pilot clinical trials in chronic kidney disease patients on hemodialysis included in the methodological survey. The data dictionary is included in the second tab. (XLS 158 kb)
DOI: 10.6084/m9.figshare.7701056.v1
title: thermal tolerance plasticity in Chagas disease vectors.xlsx

description: <i>Each treatment consisted of </i><i>exposing </i><i>5th instar</i><i>nymphs</i><i> to a certain environmental temperature (14, 21, 28 or 35°C) for a week i</i><i>n a chamber</i><i> under a 12:12 photoperiod (light on 9:00 am)</i><i>. </i><i>On the 7th day, critical thermal maxima (CTmax), critical thermal minimum (CTmin) or</i><i>chill-coma recovery time (CCRT), were determined as response variables. </i><i>CTmax was considered as the temperature at which insects lose</i><i> locomotor activity. </i><i>CTmin was considered as the temperature at which insects loose coordinated muscular </i><i>function. </i><i>To determine CCRT </i><i>specimens were placed in an adiabatic container with liquid water and ice (ca. 0°C) for </i><i>one hour. Then, t</i><i>he time elapsed until insects turn round from a ventral side up position was recorded. </i><i>Insects that did not recover after one hour were designated as “non-</i><i>recovered”.</i>
DOI: 10.6084/m9.figshare.7701056.v2
title: thermal tolerance plasticity in Chagas disease vectors.xlsx

description: <i>Each treatment consisted of </i><i>exposing </i><i>5th instar</i><i>nymphs</i><i> to a certain environmental temperature (14, 21, 28 or 35°C) for a week i</i><i>n a chamber</i><i> under a 12:12 photoperiod (light on 9:00 am)</i><i>. </i><i>On the 7th day, critical thermal maxima (CTmax), critical thermal minimum (CTmin) or</i><i>chill-coma recovery time (CCRT), were determined as response variables. </i><i>CTmax was considered as the temperature at which insects lose</i><i> locomotor activity. </i><i>CTmin was considered as the temperature at which insects loose coordinated muscular </i><i>function. </i><i>To determine CCRT </i><i>specimens were placed in an adiabatic container with liquid water and ice (ca. 0°C) for </i><i>one hour. Then, t</i><i>he time elapsed until insects turn round from a ventral side up position was recorded. </i><i>Insects that did not recover after one hour were designated as “non-</i><i>recovered”.</i>
DOI: 10.6084/m9.figshare.22643442
title: The complete mitogenome of <i>Paratanakia chii</i> (Cypriniformes; Cyprinidae)

description: <i>Paratanakia chii</i> is a bitterling fish of the genus <i>Paratanakia</i>, subfamily Acheilognathinae and family Cyprinidae. The mitochondrial DNA sequence of <i>P. chii</i> is reported in this paper. The complete mitochondrial genome of <i>P. chii</i> is 16,575 bp in length, including 13 protein-coding genes (PCGs), 2 rRNA genes, 22 tRNA genes, and 1 displacement loop (D-loop). The genome sequence is consistent with those of most other carp. The majority of PCGs have AT- (Met) start codons and TA- end codons. The A + T contents of the genome, PCGs, transfer RNAs (tRNAs), and ribosomal RNAs (rRNAs) are 56.92%, 58.07%, 56.34%, and 54.21%, respectively. Phylogenetic analysis showed that <i>P. chii</i> is most closely related to <i>Tanankia himantegus</i>. These data will benefit relative ecological and phylogenetic studies.