cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17562075
title: Mining Web Evolution: A Dataset of DOM Changes Across Websites

description: Abstract:

Continuous evolution in web applications leads to frequent structural modifications, presenting significant challenges for software maintenance and empirical analysis. However, comprehensive datasets reflecting large-scale, real-world web evolution remain limited. This paper introduces a dataset comprising historical Document Object Model (DOM) snapshots from 226 widely accessed websites, retrieved via the Wayback Machine API. For each site, up to 1,000 time-ordered versions were collected at a minimum interval of one day, capturing detailed structural data such as absolute XPath positions and precise timestamps. The dataset encompasses over 251 million DOM node positions, providing a robust foundation for studies on change patterns, predictive modelling of web evolution, and benchmarking maintenance tools. By releasing this resource to the research community, we facilitate reproducible experimentation and enable novel, data-driven investigations into the long-term evolution of web applications.

Dataset Description:

The dataset is provided as CSV files using the separator character ','. Each file is named after the project or website name. We provide two directories, one for normalised values and one without normalised values.

Each one of the files contains 11 column representing features of a node. 

 


node
value
timestamp
position
length
depth
nr_siblings
nr_children
xpath
isattribute
changed




node is the name of the node. If it's a structural node, then it's a tag name; if an attribute, then attribute name. The value is used for attributes which have information within. timestamp is which snapshot the node was taken from the Wayback Machine. position is the relative position of the node within the neighbours. length is how far the node is from the root, and depth is how far it is from the closest leaf node. nr_siblings is the number of nodes within the same structural place. nr_children is the number of nodes within the current node. xpath is the path from the root to the node. isattribute is true or false to indicate whether the node is an attribute. Lastly, changed is the label given to the node; has it changed from the last version or not.

We provide two zip files:



DOM_position_change_normalised : contains the data for training and testing model-driven solutions. The values computed in the files are normalised using MinMaxScaler from sklearn.

DOM_position_change : Contains the raw data mined from the DOMs of websites of the study.
DOI: 10.25549/inscriptifact-ouc110828078
title: Persepolis Fortification Elamite Tablet 0831, PF 0831

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] PF 0831 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge. ❧ [Physical Object Note:] Damage on left edge, cracks and damage on obverse. Crack on right edge, upper edge.
DOI: 10.15468/dl.jeqwb2
title: Occurrence Download

description: A dataset containing 2580 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((37 2.75,37.72 2.75,37.72 3.42,37 3.42,37 2.75))",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 2580 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024370-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc110830671
title: Persepolis Fortification Elamite Tablet 1226, PF 1226

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF 1226 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge, reverse. ❧ [Physical Object Note:] Cracks on left edge, obverse, reverse.
DOI: 10.25549/inscriptifact-ouc110828074
title: Persepolis Fortification Elamite Tablet 0831, PF 0831

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] PF 0831 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge. ❧ [Physical Object Note:] Damage on left edge, cracks and damage on obverse. Crack on right edge, upper edge.
DOI: 10.25549/inscriptifact-ouc110830666
title: Persepolis Fortification Elamite Tablet 1226, PF 1226

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF 1226 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge, reverse. ❧ [Physical Object Note:] Cracks on left edge, obverse, reverse.
DOI: 10.25549/inscriptifact-ouc110828066
title: Persepolis Fortification Elamite Tablet 0831, PF 0831

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] PF 0831 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge. ❧ [Physical Object Note:] Damage on left edge, cracks and damage on obverse. Crack on right edge, upper edge.
DOI: 10.25549/inscriptifact-ouc110830662
title: Persepolis Fortification Elamite Tablet 1226, PF 1226

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF 1226 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge, reverse. ❧ [Physical Object Note:] Cracks on left edge, obverse, reverse.
DOI: 10.25549/inscriptifact-ouc110828064
title: Persepolis Fortification Elamite Tablet 0831, PF 0831

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] PF 0831 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge. ❧ [Physical Object Note:] Damage on left edge, cracks and damage on obverse. Crack on right edge, upper edge.
DOI: 10.25549/inscriptifact-ouc110830606
title: Persepolis Fortification Elamite Tablet 1226, PF 1226

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF 1226 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge, reverse. ❧ [Physical Object Note:] Cracks on left edge, obverse, reverse.
DOI: 10.25549/inscriptifact-ouc110828060
title: Persepolis Fortification Elamite Tablet 0831, PF 0831

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] PF 0831 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge. ❧ [Physical Object Note:] Damage on left edge, cracks and damage on obverse. Crack on right edge, upper edge.
DOI: 10.25549/inscriptifact-ouc110827847
title: Persepolis Fortification Elamite Tablet 2295.101, Fort 2295.101

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] Fort 2295.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge, reverse. ❧ [Physical Object Note:] Broken bottom edge, right edge. Damaged left edge.
DOI: 10.15468/dl.x58w96
title: Occurrence Download

description: A dataset containing 25139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Central African Republic",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 25139 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024374-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17349913
title: Early dissemination primes the pre metastatic niche in the liver via neutrophil recruitment during the intestinal adenoma stage.

description: These datasets correspond to a manuscript currently in revision.

Summary:

Early dissemination refers to the spread of tumor cells to distant organs before they acquire the full capacity to form overt metastases. The contribution of this process to metastatic progression, and its prevalence across different types of cancer including colorectal, remain poorly understood.

In this study, we uncovered the occurrence and significance of early dissemination during intestinal tumorigenesis—a previously unexplored phenomenon. Remarkably, we detected and characterized circulating intestinal cells in the blood of patients with benign adenomas, revealing that dissemination can occur at a pre-malignant stage. 

To determine the functional impact of this process, we developed a genetic mouse model enabling the study of early dissemination during the initial phases of intestinal tumorigenesis. Using this model, we identified mutated intestinal cells in both the blood and the liver already at the early adenoma stage. This early dissemination, including intestinal cells and specific cytokines, induces the establishment of a pre-metastatic niche, characterized by neutrophil enrichment in the liver, which in turn facilitated later colonization by aggressive cancer cells.

Collectively, our findings provide the first clinical evidence that early dissemination occurs in patients with intestinal adenomas and demonstrate its critical role in shaping the metastatic microenvironment in mice. Beyond advancing our understanding of metastatic biology, these results open translational perspectives for the early detection of high-risk patients and the development of preventive strategies targeting the pre-metastatic niche before malignant progression occurs.

More specifically, they include:



raw_counts_CTCs.tsv – Raw gene count matrix obtained from bulk 3′ mRNA sequencing of circulating tumor cells (CTCs) isolated from three patients with intestinal adenomas and one healthy donor.

M-989_IGF_Pannequin/ – Folder containing the raw data generated using the NanoString GeoMx Digital Spatial Profiler (DSP) platform for spatial transcriptomics analysis.
DOI: 10.5281/zenodo.17349914
title: Early dissemination primes the pre metastatic niche in the liver via neutrophil recruitment during the intestinal adenoma stage.

description: These datasets correspond to a manuscript currently in revision.

Summary:

Early dissemination refers to the spread of tumor cells to distant organs before they acquire the full capacity to form overt metastases. The contribution of this process to metastatic progression, and its prevalence across different types of cancer including colorectal, remain poorly understood.

In this study, we uncovered the occurrence and significance of early dissemination during intestinal tumorigenesis—a previously unexplored phenomenon. Remarkably, we detected and characterized circulating intestinal cells in the blood of patients with benign adenomas, revealing that dissemination can occur at a pre-malignant stage. 

To determine the functional impact of this process, we developed a genetic mouse model enabling the study of early dissemination during the initial phases of intestinal tumorigenesis. Using this model, we identified mutated intestinal cells in both the blood and the liver already at the early adenoma stage. This early dissemination, including intestinal cells and specific cytokines, induces the establishment of a pre-metastatic niche, characterized by neutrophil enrichment in the liver, which in turn facilitated later colonization by aggressive cancer cells.

Collectively, our findings provide the first clinical evidence that early dissemination occurs in patients with intestinal adenomas and demonstrate its critical role in shaping the metastatic microenvironment in mice. Beyond advancing our understanding of metastatic biology, these results open translational perspectives for the early detection of high-risk patients and the development of preventive strategies targeting the pre-metastatic niche before malignant progression occurs.

More specifically, they include:



raw_counts_CTCs.tsv – Raw gene count matrix obtained from bulk 3′ mRNA sequencing of circulating tumor cells (CTCs) isolated from three patients with intestinal adenomas and one healthy donor.

M-989_IGF_Pannequin/ – Folder containing the raw data generated using the NanoString GeoMx Digital Spatial Profiler (DSP) platform for spatial transcriptomics analysis.
DOI: 10.15468/dl.p8lihj
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081209-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gvtba0
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005846-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dbxsqp
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053725-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5mk65k8s
title: MassIVE MSV000095020 - DIA-SWATH analysis of the effect of cysteamine in cystinotic fibroblasts
title: Fibroblast cell lines form cystinotic and non-cystinotic fibroblast were incubated for 48h with increasing amounts of cysteamine, the only available treatment for cystinosis, an incurable metabolic rare disease that is characterized by accumulation of cystine crystals in the cells and accompanied by detrimental symptoms at the renal, ocular, and muscular levels. Cysteamine treatment delays the symptoms and improves the quality of life of the patients, but the patients depend on it for life. Furthermore, oral cysteamine treatment present undesirable side effects and fails in avoiding the end-stage renal failure that inevitably drives to kidney transplant. Our results will be helpful to understand, from a molecular point of view, the benefits, deficiencies, and detrimental effects of the cysteamine treatment.
DOI: 10.15468/dl.b8mrgb
title: Occurrence Download

description: A dataset containing 103345155 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 103345155 records from 11660 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0244425-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ktbli1
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005729-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ycdqek
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005727-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eurbap
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005738-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.durtnc
title: Occurrence Download

description: A dataset containing 1384 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Issue is Geodetic datum assumed WGS84",
 "HasCoordinate is true",
 "TaxonKey is Eriobotrya japonica (Thunb.) Lindl.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1384 records from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006310-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nhjwgh
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005733-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nxyqph
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005737-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cp0wif
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005734-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9dxvmx
title: Occurrence Download

description: A dataset containing 4586667 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Magnoliopsida",
 "Geometry POLYGON((-172.62 10.46,-172.62 72.83,-18.89 72.83,-18.89 10.46,-172.62 10.46))",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "BasisOfRecord is Fossil",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Unknown evidence",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Specimen"
 ]
 }
 ]
}

 The dataset includes 4586667 records from 331 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005746-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vprdks
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005739-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.