cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0802613.10fu
title: SH0802613.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0802614.10fu
title: SH0802614.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0802615.10fu
title: SH0802615.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.aejqqv
title: Occurrence Download

description: A dataset containing 177700 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material citation, Living Specimen, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "TaxonKey is Solidago gigantea Aiton"
 ]
}

 The dataset includes 177700 records from 658 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077220-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0802616.10fu
title: SH0802616.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0802617.10fu
title: SH0802617.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.h9x8uy
title: Occurrence Download

description: A dataset containing 174559 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material citation, Living Specimen, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "TaxonKey is Solidago canadensis L."
 ]
}

 The dataset includes 174559 records from 738 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077217-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/1de59697a8661d587933f10620a9120d
title: Horizontal sand mass flux data Derived from 5-stage BSNE collectors at 15  NPP sites and Geomet site

description: Collections of airborne sand are obtained at the 15 NPP sites and the Geomet site. The collections are taken using BSNE collectors. The collectors are turned into the wind with wind vanes. The amount of material collected corresponds to the horizontal flux at the height of the collector and the opening area of the collector and the duration of the sampling time. The five heights of the BSNE collectors above the soil surface are 5, 10, 20, 50, and 100 centimeters for every location where samples are taken. The hypothesis of the experiment is that the vertical flux of the particles smaller than 10 micrometers is a constant ratio of the horizontal sand flux. The objectives of the experiment are to find patterns of sand flux rates as affected by soil and vegetation.
DOI: 10.6073/pasta/9e7448d548a74872f1e3e0fe440683e0
title: Aggregate mesquite litter chemistry following soil-litter mixing and decomposition in a semi-arid grassland from 2010-2012

description: The effect of vegetation structure on soil-litter mixing (SLM) and decomposition was explicitly tested in a litterbag experiment on a Chihuahuan Desert grassland site where vegetation cover was manipulated to simulate the progressive loss of grass cover accompanying livestock grazing and woody plant encroachment.  We hypothesized that (i) reductions in grass cover would destabilize soils and promote SLM, and (ii) that SLM would enhance microbial abundance and alter microbial community composition in ways that accelerate decomposition. To test our hypotheses, we quantified mass loss, and chemistry of litter incubated on sites with experimental reductions in grass cover (0 to 100% removals) over a 12-month period.  This dataset is of the percent carbon, percent nitrogen, and the carbon to nitrogen ratio.
DOI: 10.5281/zenodo.1253013
title: Individual Life Histories Sanderlings Calidris Alba At Six Non-Breeding Locations Along East-Atlantic Flyway

description: The data file contains individual encounter histories of 1,358 adult Sanderlings (<em>Calidris alba</em>) that winter in six different areas, England, France, Portugal, Mauritania, Ghana or Namibia and were observed between 2007-2013 in the main study site, their winter area (between 1 November – 1 March) and/or outside the main study site, during the interval between encounter occasions at the main study sites (during migration in Europe between 15 March and 15 October and at least 2 latitudinal degrees north of the median winter latitude). Encounter histories are coded as ‘LDLD’ (“Live, dead, live, dead”), where L codes for life encounters in the main study site (0: not observed, 1: observed) and D for (life or dead) encounters outside the main study sites (0: not observed, 1: observed dead, 2: observed alive). The encounter history of an individual starts with the first observation in its wintering region in the year after marking. Winter regions are indicated by the last six columns of the data file which are separated by spaces, where a 1 in the first column indicates England, the second column indicates France, the third Portugal, the fourth Mauritania, the fifth Ghana and the sixth Namibia. Further details can be found in the methods section in the manuscript.
DOI: 10.5281/zenodo.1253014
title: Individual Life Histories Sanderlings Calidris Alba At Six Non-Breeding Locations Along East-Atlantic Flyway

description: The data file contains individual encounter histories of 1,358 adult Sanderlings (<em>Calidris alba</em>) that winter in six different areas, England, France, Portugal, Mauritania, Ghana or Namibia and were observed between 2007-2013 in the main study site, their winter area (between 1 November – 1 March) and/or outside the main study site, during the interval between encounter occasions at the main study sites (during migration in Europe between 15 March and 15 October and at least 2 latitudinal degrees north of the median winter latitude). Encounter histories are coded as ‘LDLD’ (“Live, dead, live, dead”), where L codes for life encounters in the main study site (0: not observed, 1: observed) and D for (life or dead) encounters outside the main study sites (0: not observed, 1: observed dead, 2: observed alive). The encounter history of an individual starts with the first observation in its wintering region in the year after marking. Winter regions are indicated by the last six columns of the data file which are separated by spaces, where a 1 in the first column indicates England, the second column indicates France, the third Portugal, the fourth Mauritania, the fifth Ghana and the sixth Namibia. Further details can be found in the methods section in the manuscript.
DOI: 10.6073/pasta/fb37cfb595956225c316160a84442f68
title: Aggregate mesquite litter mass following soil-litter mixing and decomposition in a semi-arid grassland from 2010-2012

description: Mesquite litter mass loss from decomposition associated with soil-litter mixing.
 
Decomposition models typically under-predict decomposition relative to observed rates in drylands. This discrepancy indicates a significant gap in our mechanistic understanding of carbon and nutrient cycling in these systems. Recent research suggests that certain drivers of decomposition that are often not explicitly incorporated into models (e.g., photodegradation and soil-litter mixing; SLM) may be important in drylands, and their exclusion may, in part, be responsible for model under-predictions. To assess the role of SLM, litterbags were deployed in the Chihuahuan Desert and interrelationships between vegetation structure, SLM, and rates of decomposition were quantified. Vegetation structure was manipulated to simulate losses of grass cover from livestock grazing and shrub encroachment. I hypothesized that reductions in grass cover would promote SLM and accelerate mass loss by improving conditions for microbial decomposition.  
 
For more see: Hewins, D. B., S. R. Archer, G. S. Okin, R. L. McCulley, and H. L. Throop. 2013. Soil-litter mixing accelerates decomposition in a Chihuahuan Desert grassland. Ecosystems 16:183-195
DOI: 10.17632/9kc3vh7k7w.1
title: Data for: The Socio-Environmental Impacts of Public Urban Fruit Trees: A Montreal Case-Study

description: Interview guide and code list for paper titled "The Socio-Environmental Impacts of Public Urban Fruit Trees: A Montreal Case-Study."
DOI: 10.5281/zenodo.1253016
title: Sanderlings (Calidris Alba) Of Two Different Age Classes At The Moment Of Individual Colour-Marking At Four Non-Breeding Sites That Were Or Were Not Observed During Migration Following The Capture.

description: The data file contains data of Sanderlings (<em>Calidris alba</em>) of two different age classes at the moment of capture and individual colour-marking at one of four wintering areas that were or were not observed during migration following the capture. Each individual is indicated with a unique number in column “BirdID”. The column “country” indicates which of the four wintering areas (as depicted in Fig. 1 in the manuscript), with GB indicating England, PT indicating Portugal, MR indicating Mauritania and GH indicating Ghana.  The “age” of each bird was either juvenile (&lt;1 year old) or adult (&gt;1 year old). Whether an individual was observed during migration, i.e. at least 2 latitudinal degrees north of its average winter location between 15 March – 15 October, in the migration period following capture is indicated with a 0 (not observed) or 1 (observed)  in the column “observed”. Further details can be found in the methods section in the manuscript.
DOI: 10.5281/zenodo.1253017
title: Sanderlings (Calidris Alba) Of Two Different Age Classes At The Moment Of Individual Colour-Marking At Four Non-Breeding Sites That Were Or Were Not Observed During Migration Following The Capture.

description: The data file contains data of Sanderlings (<em>Calidris alba</em>) of two different age classes at the moment of capture and individual colour-marking at one of four wintering areas that were or were not observed during migration following the capture. Each individual is indicated with a unique number in column “BirdID”. The column “country” indicates which of the four wintering areas (as depicted in Fig. 1 in the manuscript), with GB indicating England, PT indicating Portugal, MR indicating Mauritania and GH indicating Ghana.  The “age” of each bird was either juvenile (&lt;1 year old) or adult (&gt;1 year old). Whether an individual was observed during migration, i.e. at least 2 latitudinal degrees north of its average winter location between 15 March – 15 October, in the migration period following capture is indicated with a 0 (not observed) or 1 (observed)  in the column “observed”. Further details can be found in the methods section in the manuscript.
DOI: 10.5517/ccdc.csd.cc1zyg2g
title: CCDC 1845556: Experimental Crystal Structure Determination

description: Related Article: Brian W. Skelton, Scott G. Stewart, Nikki Y. T. Man, Allan J. McKinley|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/4trfbrfzd7.1
title: Data for: Are morally good actions ever free?

description: Datasets and syntax for Clark, Shniderman, Ditto, Luguri, & Baumeister (under review) Are morally good actions ever free? Please see manuscript and supplemental file for descriptions of experimental design and measured variables. Please contact the lead researcher Cory Clark (callcoryclark@gmail.com) with any questions.
DOI: 10.5281/zenodo.1253757
title: Effect Of Orthodontic Treatment On The Subgingival Microbiota: A Systematic Review And Meta-Analysis

description: Datasets for the analysis in the published paper
DOI: 10.5281/zenodo.1253758
title: Effect Of Orthodontic Treatment On The Subgingival Microbiota: A Systematic Review And Meta-Analysis

description: Datasets for the analysis in the published paper
DOI: 10.5281/zenodo.1254031
title: Data To Accompany The Paper "Improved Fragment-Based Protein Structure Prediction By Redesign Of Search Heuristics"

description: This repository contains the older and newer input fragment sets and other data used for the analyses in our paper. The filenames for each tarball contain the PDB identifier of each protein along with a chain ID if applicable, followed by 'old' or 'new' for old and new fragments, respectively. Each tarball contains: a .fasta file of the input sequence, a matching PDB structure file, the relevant PSIPRED secondary structure prediction file, and the 9mer and 3mer fragment files. <br>
<br>
An additional tarball, ScoreRMSDplots_3protocols.tgz, contains extended versions of Figure 3 which show score and RMSD distributions clearly. Additionally, the same data is shown for equivalent experiments using the older fragment set.
DOI: 10.17632/wz9yrmdyhv.1
title: Data for: On the Lagrange stability of motion in the spatial circular restricted three-body problem

description: The circular restricted three-body problem
DOI: 10.5281/zenodo.1252324
title: On the Diversity and Frequency of Formula Code in Java

description: Supplementary Material to: On Formula Code and the Diversity and Frequency of Implementations of Sum and Product Formulas in Java
DOI: 10.5281/zenodo.1253022
title: Data And R-Script To Analyse Timing Of Northward Migration Of Sanderlings (Calidris Alba) Through Europe

description: The data file contains data of observations of individual Sanderlings (<em>Calidris alba</em>) from specific wintering areas observed during migration in different latitude sectors through Europe. This is a subset of the raw data file which also includes observations at the wintering grounds. Each individual is indicated with a unique number in column “Individual”. The column “Winter Area” indicates the winter location of each individual in sectors of 5 degrees latitude (as depicted in Fig. 1 in the manuscript), with 7 indicating Scotland, 8 England, 9 France, 10 North Iberia, 11 Portugal, 13 Canary Islands, 15 Mauritania, 18 Ghana and 23 Namibia, as indicated in the column “Winter_Country”.  “Date_DOY” indicates the day of year on which current observation was made. “Year” indicates the year during which an observation was made, “lat” is the latitude and “lon” the longitude of each observation in decimal degrees. “Lat_Sector” specifies in which of the sectors of 6 latitudinal degrees in Europe  (see Fig. S1) the observation was made. “Sex” indicates the sex, based on molecular methods of an individual where 0=unknown, 1=female, 2=male. “Age”is the age of an individual, where 50=juvenile (i.e. less than 1 year old), 99=adult (i.e more than 1 year old) and 0 indicates that the age was unknown. “migration” indicates whether an observed individual is conisdered to be on migration (“yes” i.e. seen at least 2 latitudinal degrees north of its average winter location) or not (“no”). Further details can be found in the methods section in the manuscript.

The R-script uses this dataset to analyse the variation in timing of migration through Europe for individual Sanderlings from different non-breeding areas. Comments and explanations can also be found in the script and in the methods section of the manuscript.
DOI: 10.5281/zenodo.1253023
title: Data And R-Script To Analyse Timing Of Northward Migration Of Sanderlings (Calidris Alba) Through Europe

description: The data file contains data of observations of individual Sanderlings (<em>Calidris alba</em>) from specific wintering areas observed during migration in different latitude sectors through Europe. This is a subset of the raw data file which also includes observations at the wintering grounds. Each individual is indicated with a unique number in column “Individual”. The column “Winter Area” indicates the winter location of each individual in sectors of 5 degrees latitude (as depicted in Fig. 1 in the manuscript), with 7 indicating Scotland, 8 England, 9 France, 10 North Iberia, 11 Portugal, 13 Canary Islands, 15 Mauritania, 18 Ghana and 23 Namibia, as indicated in the column “Winter_Country”.  “Date_DOY” indicates the day of year on which current observation was made. “Year” indicates the year during which an observation was made, “lat” is the latitude and “lon” the longitude of each observation in decimal degrees. “Lat_Sector” specifies in which of the sectors of 6 latitudinal degrees in Europe  (see Fig. S1) the observation was made. “Sex” indicates the sex, based on molecular methods of an individual where 0=unknown, 1=female, 2=male. “Age”is the age of an individual, where 50=juvenile (i.e. less than 1 year old), 99=adult (i.e more than 1 year old) and 0 indicates that the age was unknown. “migration” indicates whether an observed individual is conisdered to be on migration (“yes” i.e. seen at least 2 latitudinal degrees north of its average winter location) or not (“no”). Further details can be found in the methods section in the manuscript.

The R-script uses this dataset to analyse the variation in timing of migration through Europe for individual Sanderlings from different non-breeding areas. Comments and explanations can also be found in the script and in the methods section of the manuscript.
DOI: 10.5517/ccdc.csd.cc1pg6bp
title: CCDC 1562782: Experimental Crystal Structure Determination

description: Related Article: Zhen-Hua Li, Zhi-Jiang Jiang, Qiao-Ling Shao, Wen-Hao Lu, Qiang-Feng Shu, Wei-Ke Su|2018|J.Org.Chem.|83|6423|doi:10.1021/acs.joc.8b00669
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zdwz7
title: CCDC 1829650: Experimental Crystal Structure Determination

description: Related Article: Qian Wang, Fangfang He, Ling Huang, Daojiang Gao, Jian Bi, Guohong Zou|2018|Cryst.Growth Des.|18|3644|doi:10.1021/acs.cgd.8b00431
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.