cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3629545
title: IODP Expedition 361 Carbonates composite report

description: This composite report includes data from two analyses (total carbon from Elemental analysis [CHNS] and inorganic carbon from [Coulometer]). Each row combines the CHNS and Coulometer data from measurements made on the same sample at the same time for a particular section and section offset (depth). If data do not exist for a particular expedition, the column does not appear. To identify individual samples and tests, see each separate data type (Elemental analysis and Coulometer). If the same sample was measured multiple times by any of the methods, results in the report will be combined on one line where possible. Each additional replicate result will be shown in subsequent rows and will be combined where possible. Report includes results for carbon forms: total, inorganic, calcium carbonate, and organic by difference, along with total hydrogen, nitrogen, and sulfur.
DOI: 10.7910/dvn/xfxzpw/nf8imq
title: Database_201910.xls

description: :unav
DOI: 10.5281/zenodo.3629554
title: Underlying data for "Interpretation of Hydrogen-Deuterium Exchange Data by Maximum-Entropy Reweighting of Simulated Structural Ensembles"

description: This dataset contains code, data, and figures used in the article "Interpretation of Hydrogen-Deuterium Exchange Data<br> by Maximum-Entropy Reweighting of Simulated Structural Ensembles". Contents: code/* - Underlying code used to analyze molecular dynamics trajectories and calculate predicted HDX-MS data, used to reweight structural ensembles to best fit target HDX-MS data, and used to structurally cluster simulation frames after reweighting data/* - Simulation trajectories of the TeaA protein, along with two sub-trajectories corresponding to only 'closed' or 'open' TeaA frames, and predicted HDX-MS deuterated fractions used as target data in simulation reweighting. Also simulation trajectories of the LeuT protein, in either 'outward-facing' or 'inward-facing' conformational states embedded in a DMPC bilayer, and experimental HDX-MS deuterated fractions used as target data in simulation reweighting figures/* - Underlying data and scripts used to create all figures and movies used in the article. Where appropriate, README files include instructions for regenerating data used in the article, and details of the Python packages used to run Python scripts are available in conda_environment.yml
description: {"references": ["Bradshaw R.T., Marinelli F. et al., Structural Interpretation of Hydrogen-Deuterium Exchange with Maximum-Entropy Simulation Reweighting, 2019, Biorxiv 769398"]}
DOI: 10.7910/dvn/xfxzpw/dlewgi
title: Database_201910.xls

description: :unav
DOI: 10.5281/zenodo.3629547
title: IODP Expedition 361 Navigation

description: Operational navigation data were measured using Trimble GPS systems and saved as navigational data files including configuration, data, logs, pictures, vehicle, and waypoints. Site Fix summary data and plots are presented in Microsoft Excel. Data are presented by expedition.
DOI: 10.21227/yjek-2059
title: Broad Leaf Bidirectional Reflectance Distribution Functions (BRDFs)

description: The data relates to a study that captured deciduous broadleaf Bidirectional Reflectance Distribution Functions (BRDFs) from the visible through shortwave-infrared (SWIR) spectral regions (350-2500 nm) and accurately modeled the BRDF for extension to any illumination angle, viewing zenith, or azimuthal angle. Measurements were made from three species of large trees, Norway maple (Acer platanoides), American sweetgum (Liquidambar styraciflua), and northern red oak (Quercus rubra). We then fit the data through nonlinear regression to physical, microfacet BRDF models. The significance of this work is the implications for forestry remote sensing, as rigorous models to represent leaves allow for the creation of more accurate forest scenes for radiative transfer modeling.
DOI: 10.5281/zenodo.3629546
title: IODP Expedition 361 Navigation

description: Operational navigation data were measured using Trimble GPS systems and saved as navigational data files including configuration, data, logs, pictures, vehicle, and waypoints. Site Fix summary data and plots are presented in Microsoft Excel. Data are presented by expedition.
DOI: 10.5281/zenodo.3629697
title: Heat Dissipation Test with single Fiber Optic cable

description: A Heat Dissipation Test implies heating a conducting element within the saturated soil until its temperature increase reaches steady state while monitoring the temperature development of the heating element during heating and cooling phases. In this case, we used a single Fiber Optic (FO) cable to perform a Heat Dissipation Test, aiming to quantify groundwater flow. The FO cable is installed along the outer casing of a piezometer located in an unconsolidated shallow aquifer. The data presented are the maximum temperature reached each depth, the filtered temperature increment for the most representative depths, and the resulting values of thermal conductivity and groundwater flow based on the interpretation of the recorded data.
DOI: 10.17632/3k6zwrktsd.1
title: Data from: Fire from policy, human interventions, or biophysical factors? Temporal–spatial patterns of forest fire in southwestern China

description: Xiong, Q. L., Luo, X.J., Xiao, Y., Liang, P.H., Sun, H., Pan, K.W., Wang, L.X., Li, L.J., Pang, X.Y., 2020. Data from: Fire from policy, human interventions, or biophysical factors? temporal–spatial patterns of forest fire in southwestern China. Mendeley Data Repository. https://doi.org/10.17632/3k6zwrktsd.1
DOI: 10.17632/5n4wvd285d.4
title: Transcranial Direct Current Stimulation Elicits Stimulus-Specific Enhancement of Cortical Plasticity

description: Raw ERP data and Baseline adjusted N100 amplitude.
DOI: 10.17632/r87txj3zj4.1
title: Flow data analysis summary

description: Rize basin - Flow data analysis summary Here you can find the detailed data used and results of SWAT model simulation. We have used four calibration techniques to get the best model flow simulation. These are: (1) calibration using gauge data only from downstream area (DC), (2) calibration using gauge data only from upstream area (UC), (3) calibration using gauge data both upstream and downstream areas of the basin (Multi-Gauge Calibration – MGC), and (4) calibration using gauge data first from upstream area only, then using the data from the downstream area sequentially (UCDC).
DOI: 10.13012/b2idb-5893373_v1
title: Sun-induced chlorophyll fluorescence of two Nebraska maize sites in 2017

description: This dataset includes two data files that provide the time series (Jul. - Sep. 2017) data of sun-induced chlorophyll fluorescence (SIF_760) collected under sunny conditions at two maize sites (one rainfed and the other irrigated) in Nebraska in 2017. Data contain 392 SIF_760 records at the rainfed site and 707 records at the irrigated site. The timestamp uses local standard time. Data are available for the sunny conditions from 8 am to 5 pm (corresponding to 9 am to 6 pm local time) throughout the study period.
DOI: 10.17632/dzwxh9y98j.1
title: Ganymede : Tidally Driven Coulomb Failure SatStress, Matlab, and GMT codes

description: SatStress, Matlab, and GMT4 codes used to investigate Coulomb failure on Ganymede.
DOI: 10.17632/cp6p77cp9x.1
title: Microseismic data

description: This is the data set and label set of microseismic monitoring, including forward modeling seismic signals and measured microseismic data.
DOI: 10.17632/4my56bhrcm.1
title: Patient Controlled Analgesia after Laparoscopic Myomectomy: a Pilot Study

description: Patients undergoing laparoscopic myomectomy whose post-operative pain is managed with oral opioid analgesia compared to parenteral patient-controlled analgesia require less analgesia, report lower pain scores, and have shorter hospital stays.
DOI: 10.17632/rmgk2wdffw.1
title: Data for: AI-based Identification of Low-Frequency Debris Flow Catchments in the Bailong River Basin, China
DOI: 10.6073/pasta/50e8d9598da772c45f5fe25134d0c24b
title: WRV01 Riparian woody removal vegetation survey on watershed N2B at Konza Prairie

description: Woody riparian vegetation was cut in watershed N2B in winter 2010 for 30 m on each side of the stream channel. These vegetation surveys are from before and after removal. The treatments are naturally open (grassland), woody riparian removed, and re-planted after woody riparian removed.
DOI: 10.17632/4g74bxfvwr.1
title: Serotonin expression in the CA1, CA3, and DG of the Rat Model Neurodegeneration Dieseases

description: The data describe the expression of serotonin in the CA1, CA3, and DG hippocampal area on the in vivo and in vitro model of neurodegenerative diseases (NDD’s) with the treatment of Ocimum sanctum Linn. ethanolic extract (OSE).
DOI: 10.17632/7rb5fxj3sr.1
title: Experimental data - A Co-evolutionary Genetic Algorithm for the Two-machine Flow Shop Group Scheduling Problem with Job-related Blocking and Transportation Times

description: The experimental data (File format: txt) used to support the findings of this study are included within the supplementary information file(s).
DOI: 10.17632/t358bwfhvz.1
title: Do residents’ attitudes toward tourists and tourism affect their pro-tourism behavioral intentions? Evidence from Huangshan in China

description: This dataset is the supplementary data of the study “Do residents’ attitudes toward tourists and tourism affect their pro-tourism behavioral intentions? Evidence from Huangshan in China”.
DOI: 10.17632/zs9jf6xc78.1
title: Safety evaluation of the venom from scorpion Rhopalurus junceus: assessment of oral short term, subchronic toxicity and teratogenic effect

description: Plot data of the manuscript Safety evaluation of the venom from scorpion Rhopalurus junceus: assessment of oral short term, subchronic toxicity and teratogenic effect
DOI: 10.5281/zenodo.3629570
title: Human Cyclin-dependent kinase 12 (CDK12), kinase domain; A Target Enabling Package

description: Cyclin-dependent kinase 12 (CDK12) phosphorylates RNA Pol II C-terminal domain (CTD) to promote transcriptional elongation of large DNA damage response genes. CDK12 is frequently mutated or amplified in cancer and its loss sensitises cells to DNA damage. Here we present 3 crystal structures of the human CDK12/CycK complex including apo, AMP-PNP and covalent inhibitor complexes. Kinase assays compare domain truncations and report the Km values for substrate. THZ531 is presented as a potent and selective inhibitor of CDK12 with nanomolar activity in leukemic cell lines.
description: This document represents version 7 of the TEP datasheet and includes all updates on the project as of April 2019. For more information about TEPs and the TEP Programme, please visit https://thesgc.org/tep.
DOI: 10.17632/37gg6rt5z6.1
title: Hydroa vacciniforme-like lymphoproliferative disorder: A single center experience with analysis of 26 cases

description: We described 26 hydroa vacciniforme-like lymphoproliferative disorder (HVLPD) cases encountered at our institution over 3 decades. HVLPD has various disease courses. Lymphoma progression and mortality can occur not only in childhood but also in adulthood. We uploaded in this datasets supplemental figure showing the patient's representative histopathologic and immunohistochemical findings. Also, we uploaded the supplemental references described in the table 1 in our manuscript.
DOI: 10.5281/zenodo.3629572
title: Human Cyclin-dependent kinase 12 (CDK12), kinase domain; A Target Enabling Package

description: Cyclin-dependent kinase 12 (CDK12) phosphorylates RNA Pol II C-terminal domain (CTD) to promote transcriptional elongation of large DNA damage response genes. CDK12 is frequently mutated or amplified in cancer and its loss sensitises cells to DNA damage. Here we present 3 crystal structures of the human CDK12/CycK complex including apo, AMP-PNP and covalent inhibitor complexes. Kinase assays compare domain truncations and report the Km values for substrate. THZ531 is presented as a potent and selective inhibitor of CDK12 with nanomolar activity in leukemic cell lines.
description: This document represents version 7 of the TEP datasheet and includes all updates on the project as of April 2019. For more information about TEPs and the TEP Programme, please visit https://thesgc.org/tep.
DOI: 10.17632/46cj62735f.1
title: Partial inhibition of RNA polymerase I promotes animal health and longevity.
DOI: 10.5255/ukda-sn-853965
title: The Manchester Language Study: Eleven-year-old data for children with developmental language disorders attending language units in England 1999-2001
DOI: 10.5255/ukda-sn-854103
title: The Manchester Language Study: Sixteen-year-old data for children with developmental language disorders who had attended language units in England 2003-2008
DOI: 10.5281/zenodo.3629566
title: Biobox YAML file for the CAMI 2 Mouse Gut Toy data set, samples 0-63

description: Biobox YAML file for the CAMI 2 Mouse Gut Toy data set, samples 0-63
DOI: 10.5281/zenodo.3629567
title: Biobox YAML file for the CAMI 2 Mouse Gut Toy data set, samples 0-63

description: Biobox YAML file for the CAMI 2 Mouse Gut Toy data set, samples 0-63
DOI: 10.15479/at:ista:7383
title: Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression regulation

description: Organisms cope with change by employing transcriptional regulators. However, when faced with rare environments, the evolution of transcriptional regulators and their promoters may be too slow. We ask whether the intrinsic instability of gene duplication and amplification provides a generic alternative to canonical gene regulation. By real-time monitoring of gene copy number mutations in E. coli, we show that gene duplications and amplifications enable adaptation to fluctuating environments by rapidly generating copy number, and hence expression level, polymorphism. This ‘amplification-mediated gene expression tuning’ occurs on timescales similar to canonical gene regulation and can deal with rapid environmental changes. Mathematical modeling shows that amplifications also tune gene expression in stochastic environments where transcription factor-based schemes are hard to evolve or maintain. The fleeting nature of gene amplifications gives rise to a generic population-level mechanism that relies on genetic heterogeneity to rapidly tune expression of any gene, without leaving any genomic signature.
DOI: 10.25345/c5nt2f
title: MassIVE MSV000084849 - Supplemental Data For: Lipid Annotator: Towards Accurate Annotation in Non-Targeted LC-HRMS/MS Lipidomics Using A Rapid and User-Friendly Software
title: This data was used in the manuscript: "Lipid Annotator: Towards Accurate Annotation in Non-Targeted LC-HRMS/MS Lipidomics Using A Rapid and User-Friendly Software" Aliquots (40 uL for (+ mode) and 120 uL for (- mode)) of thawed plasma (NIST SRM 1950 Metabolites in Frozen Plasma, Sigma, St. Louis USA) were each extracted using a modified Folch extraction procedure and reconstituted in 100 uL of a methanol/chloroform mixture (9:1, v/v). LC separation was performed on an Agilent 1290 Infinity II LC System, with a 19 min gradient time on a reverse phase C18 column (Agilent InfinityLab Poroshell 120 EC-C18, 3.0 x 100 mm, 2.7 um). Mobile phase consisted of 10 mM ammonium acetate and 0.2 mM ammonium fluoride in 9:1 water/methanol, while mobile phase B consisted of 10 mM ammonium acetate and 0.2 mM ammonium fluoride in 2:3:5 acetonitrile/methanol/isopropanol. Negative and positive polarity data was acquired on the Agilent 6546 LC/Q-TOF using iterative MS/MS acquisition mode on 6 injections of extracted plasma for each polarity. Detailed experimental methods for chromatography and mass spectrometry can be found in in the Agilent application note 5994-0775en. Two methods were used, a high-load and a low-load method, to determine the effect of high injection volumes / concentration on the number of annotations using the Agilent 6546 LC/Q-TOF.
DOI: 10.5281/zenodo.3629575
title: Empirical Study of the Relationship between Design Patterns and Code Smells

description: Software systems are often developed in such a way that good practices in the object-oriented paradigm are not met, causing the occurrence of specific disharmonies which are sometimes called code smells. Design patterns catalogue best practices for developing object-oriented software systems. Although code smells and design patterns are widely divergent, there might be a co-occurrence relation between them. The objective of this paper is to empirically evaluate if the presence of design patterns is related to the presence of code smells at different granularity levels. We performed an empirical replication study using 20 design patterns and 13 code smells in ten small-size to medium-size, open-source Java-based systems. We applied statistical analysis and association rules. Results confirm that classes participating in design patterns have less smell-proneness and smell frequency than classes not participating in design patterns. We also noticed that every design pattern category act in the same way in terms of smell-proneness in the subject systems. However, we observed, based on the association rules learning and the proposed validation technique, that some patterns may be linked with certain smells in some cases. For instance, Command patterns can co-occur with God Class, Blob and External Duplication smell. <strong>The published data set contains the following:</strong> List of the selected systems (source code files) The P-MARt: the design pattern repository as XML for the selected systems. Data of design patterns and code smells: We processed this data by parsing the design pattern XML file and running the smell detection tool (inFusion). The data of the data mining analysis.
DOI: 10.5281/zenodo.3629576
title: Empirical Study of the Relationship between Design Patterns and Code Smells

description: Software systems are often developed in such a way that good practices in the object-oriented paradigm are not met, causing the occurrence of specific disharmonies which are sometimes called code smells. Design patterns catalogue best practices for developing object-oriented software systems. Although code smells and design patterns are widely divergent, there might be a co-occurrence relation between them. The objective of this paper is to empirically evaluate if the presence of design patterns is related to the presence of code smells at different granularity levels. We performed an empirical replication study using 20 design patterns and 13 code smells in ten small-size to medium-size, open-source Java-based systems. We applied statistical analysis and association rules. Results confirm that classes participating in design patterns have less smell-proneness and smell frequency than classes not participating in design patterns. We also noticed that every design pattern category act in the same way in terms of smell-proneness in the subject systems. However, we observed, based on the association rules learning and the proposed validation technique, that some patterns may be linked with certain smells in some cases. For instance, Command patterns can co-occur with God Class, Blob and External Duplication smell. <strong>The published data set contains the following:</strong> List of the selected systems (source code files) The P-MARt: the design pattern repository as XML for the selected systems. Data of design patterns and code smells: We processed this data by parsing the design pattern XML file and running the smell detection tool (inFusion). The data of the data mining analysis.
DOI: 10.17632/55p6trdkjt.2
title: Data for: Spatial Prioritization for Urban Biodiversity Quality

description: Standard Zonation input and output files for prioritization of urban biodiversity quality in Helsinki Metropolitan Area, Finland
DOI: 10.17632/twgm3482vt.2
title: Data for: Spatial Prioritization for Urban Biodiversity Quality

description: Description about the generation of an urban biotope map in Helsinki Metropolitan Area, Finland.
DOI: 10.5286/isis.e.rb2000136
title: Title: IMAT commissioning : use of cold neutrons to discriminate minerals with similar density

description: One of the major challenges of XCT is the lack of X-ray penetration in the dense mineral samples and the distinction of minerals with close atomic number Z. The lack of penetration results in beam hardening especially for minerals with densities higher than 3g/cm3. The utilisation of cold neutrons at IMAT with optimal neutron wavelengths (neutron energy dependant experiment) can be used to discriminate different iron ore oxides (hematite and magnetite) as well as 11 other minerals. This application is important because it will demonstrate minerals that require cold neutron source for optimal discrimination and those that require XCT application. Understanding this requirement will result in calibration and optimal application of the two techniques especially for geological samples that poses challenges when scanned only with XCT.
DOI: 10.5286/isis.e.rb2000136-1
title: Title: IMAT commissioning : use of cold neutrons to discriminate minerals with similar density

description: One of the major challenges of XCT is the lack of X-ray penetration in the dense mineral samples and the distinction of minerals with close atomic number Z. The lack of penetration results in beam hardening especially for minerals with densities higher than 3g/cm3. The utilisation of cold neutrons at IMAT with optimal neutron wavelengths (neutron energy dependant experiment) can be used to discriminate different iron ore oxides (hematite and magnetite) as well as 11 other minerals. This application is important because it will demonstrate minerals that require cold neutron source for optimal discrimination and those that require XCT application. Understanding this requirement will result in calibration and optimal application of the two techniques especially for geological samples that poses challenges when scanned only with XCT.
DOI: 10.7910/dvn/zfag4s/6g3s8k
title: Tuungane_Treatment.tab

description: Treatment indicator. Random assignment of the NGO program "Tuungane"
DOI: 10.7910/dvn/zfag4s/6hzocb
title: DRC2015_EC.tab

description: Village level chief survey
DOI: 10.7910/dvn/zfag4s/6yqdmf
title: DRC2015_ES.tab

description: School survey
DOI: 10.7910/dvn/zfag4s/7g5jil
title: DRC2015_Exam.tab

description: Exam with children
DOI: 10.7910/dvn/zfag4s/dzqxu7
title: DRC2015_EE.tab

description: School survey
DOI: 10.7910/dvn/zfag4s/jkjivh
title: DRC2015_Village_Info.tab

description: Additional information "from the field"
DOI: 10.7910/dvn/zfag4s/w0tdho
title: DRC2015_Overview_Label.tab

description: Overview of labels used in the datasets
DOI: 10.7910/dvn/zfag4s/zbw28t
title: DRC2015_Instruments.pdf

description: Survey instruments including protocols and codebook
DOI: 10.5281/zenodo.3629638
title: Data for the extraction of the critical temperature of niobium films deposited on copper produced at CERN for SRF applications

description: Each data set contains the voltage signal amplitude induced in a pickup coil by an alternating magnetic field, crossing the niobium-film-on-copper sample during its state transition from normal conducting to superconducting, the corresponding sample temperature and the estimated errors for the two measured quantities. File columns: #1 sample temperature in Kelvin, #2 estimated temperature error, #3 voltage amplitude in pickup coil in Volt, #4 estimated amplitude error. One data set corresponds to one sample. The critical temperature can be extracted as fit parameter by fitting the amplitude versus temperature data with a logistic function, where it corresponds to the half height of the state transition curve.