cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5524/101484
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0421

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00002107. Preliminary identification is that it is of the family Themeda triandra. <br>The K-mer distribution of the sequencing predicted the genome size to be 4651410000bp. We have generated 54800000000bp of data, which gives a theoretical coverage of 11.8x.
DOI: 10.5524/101489
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0426

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001825. Preliminary identification is that it is of the family Plantaginaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 1831550000bp. We have generated 72080000000bp of data, which gives a theoretical coverage of 39.4x.
DOI: 10.5524/101491
title: Genomic data of Nanmaohu Park Polygonaceae plant specimen, RL0428

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001872. Preliminary identification is that it is of the family Polygonaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 1421220000bp. We have generated 74340000000bp of data, which gives a theoretical coverage of 52.3x.
DOI: 10.5524/101492
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0429

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001873. Preliminary identification is that it is of the family Polygonaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 1128750000bp. We have generated 71000000000bp of data, which gives a theoretical coverage of 62.9x.
DOI: 10.5524/101493
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0430

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001728. Preliminary identification is that it is of the family Lauraceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 1269620000bp. We have generated 73200000000bp of data, which gives a theoretical coverage of 57.7x.
DOI: 10.5524/101494
title: Image data of Nanmaohu Park vascular plant specimen, RL0431

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains images from the plant vouchered as not provided. Preliminary identification is that it is of the family uncharacterized vascular plant. <br>Unforuntaly insufficient DNA was extracted from the sample to make suquencing possible at this time.
DOI: 10.5524/101503
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0440

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001681. Preliminary identification is that it is of the family Fabaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 633743000bp. We have generated 65000000000bp of data, which gives a theoretical coverage of 102.6x.
DOI: 10.5524/101507
title: Image data of Nanmaohu Park Camellia azalea plant specimen, RL0444

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains images from the plant vouchered as HCNGB:RUILI:HCNGB_00002114. Preliminary identification is that of a Camellia azalea plant. <br>Unforuntaly insufficient DNA was extracted from the sample to make suquencing possible at this time.
DOI: 10.5524/101532
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0469

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001874. Preliminary identification is that it is of the family Polygonaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 759190000bp. We have generated 69320000000bp of data, which gives a theoretical coverage of 91.3x.
DOI: 10.15468/dl.hy5hvd
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Naturalis Biodiversity Center (NL) - Paleontology",
 "Country is Croatia"
 ]
}

 The dataset includes 36 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002006-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zyj83j
title: Occurrence Download

description: A dataset containing 10596 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-116.77133 36.53678,-72.96469 -59.81718,-26.57744 -17.44054,-48.52614 37.58691,-102.44341 43.25622,-116.77133 36.53678))",
 "HasGeospatialIssue is false",
 "TaxonKey is Calligrapha Chevrolat, 1836"
 ]
}

 The dataset includes 10596 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002001-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zqp5f6
title: Occurrence Download

description: A dataset containing 2212 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Occurrence dataset of birds in 12 Universities in Nanjing, China"
 ]
}

 The dataset includes 2212 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002007-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12949168
title: LMDZ6iso output - Antarctic water stable isotopes in the global atmospheric model LMDZ6: from climatology to boundary layer processes

description: Update of the Simulation

This archive contains the output of a revised simulation, addressing issues identified in the original simulation described in the following article:

Dutrievoz, N., Agosta, C., Risi, C., Vignon, É., Nguyen, S., Landais, A., ... & Prié, F. (2025). Antarctic water stable isotopes in the global atmospheric model LMDZ6: From climatology to boundary layer processes. Journal of Geophysical Research: Atmospheres, 130(5), e2024JD042073.

All information is available here: README

Researchers and colleagues are welcome to contact me at niels.dutrievoz@lsce.ipsl.fr for any further information regarding this updated simulation or potential collaborations. Please feel free to reach out if you are interested in daily or hourly output data from this simulation.

I look forward to any exchanges that might arise from this work.
DOI: 10.5281/zenodo.15520265
title: LMDZ6iso output - Antarctic water stable isotopes in the global atmospheric model LMDZ6: from climatology to boundary layer processes

description: Update of the Simulation

This archive contains the output of a revised simulation, addressing issues identified in the original simulation described in the following article:

Dutrievoz, N., Agosta, C., Risi, C., Vignon, É., Nguyen, S., Landais, A., ... & Prié, F. (2025). Antarctic water stable isotopes in the global atmospheric model LMDZ6: From climatology to boundary layer processes. Journal of Geophysical Research: Atmospheres, 130(5), e2024JD042073.

All information is available here: README

Researchers and colleagues are welcome to contact me at niels.dutrievoz@lsce.ipsl.fr for any further information regarding this updated simulation or potential collaborations. Please feel free to reach out if you are interested in daily or hourly output data from this simulation.

I look forward to any exchanges that might arise from this work.
DOI: 10.15468/dl.bfpagd
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is R. L. McGregor Herbarium Vascular Plants Collection",
 "Country is Croatia"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002010-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.36efme
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Malaysia",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhabdotorrhinus corrugatus (Temminck, 1832)",
 "Year 2025-2025"
 ]
}

 The dataset includes 40 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002009-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e226101v1-179621
title: Index of Relative Rurality (IRR) for Multiple Geographies

description: This project introduces researchers and other users to the Index of Relative Rurality
(IRR), a continuous, multi-dimensional, and scalable measure for characterizing
the rurality of areas or regions in the United States. First proposed by Waldorf in 2006,[1] and
later operationalized by Waldorf & Kim,[2,3] the IRR is an alternative to
categorical measures such as the Rural-Urban Continuum Codes (RUCC),
Rural-Urban Commuting Areas (RUCA), and Frontier and Remote (FAR) Codes, or
binary classifications researchers derive from them. We are distributing these data because IRR
values for some of these US geographies have not been available previously, and
because we want to clearly and fully document the data sources and methods
necessary to calculate the IRR. <br><br>1. Waldorf, B.S., 2006. A continuous
multi-dimensional measure of rurality: Moving beyond threshold measures.
Accessed 3/26/2025 at https://ageconsearch.umn.edu/record/21383?v=pdf. <br>

2. Waldorf, B. and Kim, A., 2015.
Defining and measuring rurality in the US: From typologies to continuous
indices. In Commissioned paper presented at
the Workshop on Rationalizing Rural Area Classifications, Washington, DC. Accessed 3/26/2025 at http://sites.nationalacademies.org/cs/groups/dbassesite/documents/webpage/dbasse_168031.pdf. <br>

3. Kim, A. and Waldorf, B., 2023. The
Index of Relative Rurality (IRR): US County Data for 2020. Accessed 3/26/2025
at https://zenodo.org/records/7675745. DOI: 10.5281/zenodo.7675745<br>
description: Smallest Geographic Unit: Counties, census tracts, zip code tabulation areas (ZCTAs) and 3-digit ZCTAs
DOI: 10.3886/e226101
title: Index of Relative Rurality (IRR) for Multiple Geographies

description: This project introduces researchers and other users to the Index of Relative Rurality
(IRR), a continuous, multi-dimensional, and scalable measure for characterizing
the rurality of areas or regions in the United States. First proposed by Waldorf in 2006,[1] and
later operationalized by Waldorf & Kim,[2,3] the IRR is an alternative to
categorical measures such as the Rural-Urban Continuum Codes (RUCC),
Rural-Urban Commuting Areas (RUCA), and Frontier and Remote (FAR) Codes, or
binary classifications researchers derive from them. We are distributing these data because IRR
values for some of these US geographies have not been available previously, and
because we want to clearly and fully document the data sources and methods
necessary to calculate the IRR. <br><br>1. Waldorf, B.S., 2006. A continuous
multi-dimensional measure of rurality: Moving beyond threshold measures.
Accessed 3/26/2025 at https://ageconsearch.umn.edu/record/21383?v=pdf. <br>

2. Waldorf, B. and Kim, A., 2015.
Defining and measuring rurality in the US: From typologies to continuous
indices. In Commissioned paper presented at
the Workshop on Rationalizing Rural Area Classifications, Washington, DC. Accessed 3/26/2025 at http://sites.nationalacademies.org/cs/groups/dbassesite/documents/webpage/dbasse_168031.pdf. <br>

3. Kim, A. and Waldorf, B., 2023. The
Index of Relative Rurality (IRR): US County Data for 2020. Accessed 3/26/2025
at https://zenodo.org/records/7675745. DOI: 10.5281/zenodo.7675745<br>
description: Smallest Geographic Unit: Counties, census tracts, zip code tabulation areas (ZCTAs) and 3-digit ZCTAs
DOI: 10.3886/e226101v1-179622
title: Index of Relative Rurality (IRR) for Multiple Geographies

description: This project introduces researchers and other users to the Index of Relative Rurality
(IRR), a continuous, multi-dimensional, and scalable measure for characterizing
the rurality of areas or regions in the United States. First proposed by Waldorf in 2006,[1] and
later operationalized by Waldorf & Kim,[2,3] the IRR is an alternative to
categorical measures such as the Rural-Urban Continuum Codes (RUCC),
Rural-Urban Commuting Areas (RUCA), and Frontier and Remote (FAR) Codes, or
binary classifications researchers derive from them. We are distributing these data because IRR
values for some of these US geographies have not been available previously, and
because we want to clearly and fully document the data sources and methods
necessary to calculate the IRR. <br><br>1. Waldorf, B.S., 2006. A continuous
multi-dimensional measure of rurality: Moving beyond threshold measures.
Accessed 3/26/2025 at https://ageconsearch.umn.edu/record/21383?v=pdf. <br>

2. Waldorf, B. and Kim, A., 2015.
Defining and measuring rurality in the US: From typologies to continuous
indices. In Commissioned paper presented at
the Workshop on Rationalizing Rural Area Classifications, Washington, DC. Accessed 3/26/2025 at http://sites.nationalacademies.org/cs/groups/dbassesite/documents/webpage/dbasse_168031.pdf. <br>

3. Kim, A. and Waldorf, B., 2023. The
Index of Relative Rurality (IRR): US County Data for 2020. Accessed 3/26/2025
at https://zenodo.org/records/7675745. DOI: 10.5281/zenodo.7675745<br>
description: Smallest Geographic Unit: Counties, census tracts, zip code tabulation areas (ZCTAs) and 3-digit ZCTAs
DOI: 10.5524/101521
title: Image data of Nanmaohu Park Triumfetta rhomboidea plant specimen, RL0458

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains images from the plant vouchered as HCNGB:RUILI:HCNGB_00002120. Preliminary identification is that of a Triumfetta rhomboidea plant. <br>Unforuntaly insufficient DNA was extracted from the sample to make suquencing possible at this time.