cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19141916.v1
title: Original_screen_All_tissues_raw_data.csv.zip

description: Raw data supporting Jaaks and Coker et al., 2022 (10.1038/s41586-022-04437-2). Raw data from initial drug combination screen using cancer cell lines. Cell line viability assay measured by fluorescence intensity.<br>Users have a non-exclusive, non-transferable right to use data files for internal proprietary research and educational purposes, including target, biomarker and drug discovery. Excluded from this licence are use of the data (in whole or any significant part) for resale either alone or in combination with additional data/product offerings, or for provision of commercial services.<br>
DOI: 10.6084/m9.figshare.19603321.v1
title: Global DFs V2: Design flood estimation for global river networks based on machine learning models

description: This dataset provides design flood estimates for near-global coverage using machine learning models. More details about the estimation method are described in the HESS paper (https://doi.org/10.5194/hess-25-5981-2021). We made some improvements in this version. a) We use river networks from HydroSHEDSdatasets as benchmarks. b) We use another open access CN dataset in model development. (https://doi.org/10.6084/m9.figshare.7756202.v1). c) We estimate design floods under multiple return periods (2-1000 years). The flood discharge Q is presented in log10(Q) value in each tiff file and the unit is m<sup>3</sup>/s. Please let me know (gangzhao.bristol@gmail.com) if you have any questions about this dataset. Thanks.
DOI: 10.6084/m9.figshare.5559106.v1
title: 18S rRNA raw sequence files

description: Raw sequence data of the v4 region of the 18S rRNA gene amplicon sequenced on a Illumina Miseq with corresponding metadata file. <br>
DOI: 10.6084/m9.figshare.735961.v1
title: MALDI Imaging Mass Spectrometry of a Mouse Kidney

description: Instrument: Autoflex III Smartbeam (Bruker, Bremen, Germany) Linear mode (m/z 2000 - 20000) Negative ion mode Matrix: 2,4,6-Trihydroxyacetophenone Spatial resolution: 150 µm <br> Tissue - Mouse Kidney (BI/6, C57BL/6JRccHsd) - Healthy - Snap frozen in liquid N2 immediately after harvest - 12 µm section (on Leica cryostat @ - 30°C) Matrix application Sublimation @ 160°C for 12 min 30 sec Recrystallization With 1 mL of 5% MeOH, 5% Acetic Acid @ 80°C for 2 min 30 sec (starting from RT) Tissue wash According to Yang and Caprioli, <em>Anal. Chem.</em> <strong>2011</strong>, 83, 5728-5734 ; Rinse protocol D
DOI: 10.6084/m9.figshare.8194940.v1
title: Vegetation Recovery of Logged-over Dipterocarp Forests In Central Kalimantan, Indonesia

description: ABSTRACT Forest utilization usually has an impact on changes in forest structure and species composition. The species of trees selected and ecosystem management system that refer to biodiversity characteristics will be explained by better knowledge of Functional Species Group (FSG). The purpose of this study was to determine the composition of vegetation recovery based on FSG in production forest managed with silvicultural system known as Selective Cutting and Line Planting System (SCLP) and undisturbed forest known as Germplasm Preservation Areas (GPCA) in Central Kalimantan, Indonesia. The results showed that the proportion of climax group in the entire observation plots was greater than pioneer species group, i.e. climax 100 species and pioneer 59 species. Stand structure both climax and pioneer species group has inverse J shape curve. It means that the species composition of logged-over forest is still in balance condition, characterized with high index of diversity (H' &gt; 3).
DOI: 10.6084/m9.figshare.9170975.v1
title: DEMETER 2 Combined RNAi

description: Cancer cell line genetic dependencies estimated using the DEMETER2 model. DEMETER2 is applied to the combination of three large-scale RNAi screening datasets: the Broad Institute Project Achilles, Novartis Project DRIVE, and the Marcotte et al. breast cell line dataset. This dataset is derived from https://doi.org/10.6084/m9.figshare.6025238.v4 and formatted to more closely match quarterly releases. Specifically, the main matrices have been transposed so that they are indexed by cell line, cell lines are identified by DepMap IDs, and common dependencies and dependency probability estimated. Only select files are included. Refer to the original dataset for all files. See README for more information about files.<br>Visit the Cancer Dependency Map portal at https://depmap.org to explore related datasets. Email questions to depmap@broadinstitute.org<br>
DOI: 10.17632/n53425shwp
title: Energy Forecast Dataset for Bangladesh (1975-2021)

description: The dataset consists data spanning from 1975 to 2021 with a forecast of energy consumption for Bangladesh up till 2050. The data is sourced from World Development Indicators, Our World in Data and IMF Data Repository.
DOI: 10.17632/xz7fx4n599
title: LION Data

description: LION Data is a data visualization tool that allows users to easily drag and drop Excel and CSV files directly into the browser for visualization. There are three main visualization sections, 2D & 3D graphs, building networks and filtering tables. The tool is designed to be simple to use, with no additional packages or installations required. It is fully written in HTML, providing a clean and accessible interface for anyone to visualize their data with ease.
DOI: 10.6084/m9.figshare.14226167.v1
title: Data and analysis for: What causes bird-building collision risk? Seasonal dynamics and weather drivers

description: Data and analysis associated with the research study titled: What causes bird-building collision risk? Seasonal dynamics and weather drivers
DOI: 10.6084/m9.figshare.16595927.v1
title: Semi-Structured interview guide with cancer patients.docx

description: <b>Semi-structured interview guide: </b>personal interviews with cancer patients <b>Main guiding question</b>: Can you relate to me any experiences of stigma and discrimination that you were confronted to due to your cancer diagnosis? 1) In what ways has the cancer illness changed your daily life? 2) Can you relate to me any daily pain experiences you go through? 3) Can you describe any stigma and discrimination experiences at the hands of family members/members of the public? 4) Can you comment on any feelings of shame/fear/any depression, social withdrawal/outlook about life, early reactions to news of cancer diagnosis, self-image; personal response to stigma/discrimination from family members and the public related to cancer diagnosis. 5) Can you describe your experiences with various treatment regimens? 6) In what ways has cancer changed your social relations? 7) Can you relate to me any stigma experiences/incidences due to your cancer illness? 8) What stigma experiences do other people living with cancer that you interacted with report? 9) How do you sum up a life with cancer?
DOI: 10.6084/m9.figshare.24679992.v1
title: Winter wheat dataset in North China Plain from 2003 to 2022

description: Based on MODIS ( Moderate Resolution Imaging Spectroradiometer ) Enhanced Vegetation Index ( EVI ) data and existing wheat thematic data products, this study proposes a dynamic threshold decision tree classification algorithm that does not rely on measured samples. The algorithm aims to reduce the uncertainty of traditional methods using fixed thresholds and the dependence on measured samples, thereby improving the accuracy of crop extraction and the generalization ability of the model. Based on this method, the annual winter wheat planting area in North China Plain from 2003 to 2022 was extracted, and the temporal and spatial variation of winter wheat planting area was analyzed. This study not only provides a new method for dynamic monitoring of winter wheat planting area, but also deepens the understanding of the change law of winter wheat planting area in North China Plain, and provides data support for the formulation of cultivated land protection and management strategies to ensure national food security.
DOI: 10.6084/m9.figshare.26946520.v1
title: Distinctive and highly variable bird migration system revealed in Eastern Australia

description: Processed radar data, including data for ten weather radars and summary data for comparison between Australia and the United States, and original R code to analyze the data and generate the plots associated with the publication "Distinctive and highly variable bird migration system revealed in Eastern Australia"
DOI: 10.6084/m9.figshare.27242340.v1
title: Newman et al. ONIX: A unified open-source platform for multimodal neural recording and perturbation during naturalistic behavior, Figure 2 tracking data.

description: Source data for Fig.2 of the paper ONIX: A unified open-source platform for multimodal neural recording and perturbation during naturalistic behavior. Authors: Jonathan P. Newman, Jie Zhang, Aarón Cuevas-López, Nicholas J. Miller, Takato Honda, Marie-Sophie H. van der Goes, Alexandra H. Leighton, Filipe Carvalho, Gonçalo Lopes, Anna Lakunina, Joshua H. Siegle, Mark T. Harnett, Matthew A. Wilson, Jakob Voigts. Please refer to the manuscript for more details. Preprint is available at https://www.biorxiv.org/content/10.1101/2023.08.30.554672v1
DOI: 10.17632/5j852hzfjs
title: Labeled frog-call dataset of Yasuní National Park for training Machine Learning algorithms

description: Labeled dataset of frog calls recorded at Yasuní National Park using directional and omni-directional microphones. We trained a Bayesian classifier with Gaussian Mixture Models and applied it to study the audio in Unidentified Long Recordings. The results of the analysis are in the related article. We showed that the application of a frog-call recognition algorithm allows the estimation of presence-absence of the trained subset of species in real-world recordings of an actual amphibian monitoring made in the wild.
DOI: 10.17632/f7rjw8v5gf
title: Microarray of DEPe-Treated Macrophages from the HMDP, and Lists of Macrophage Markers

description: -Gene expression dataset of DEPe-treated macrophages from 24 strains from the Hybrid Mouse Diversity Panel (HMDP). These are RMA-normalized values from Affymetrix HT MG-430A arrays.
-List of M1-like macrophage markers, derived from Kadl et al. 2010
-List of M2-like macrophage markers, derived from Kadl et al. 2010
-List of Mox-like macrophage markers, derived from Kadl et al. 2010
DOI: 10.17632/fzkc96yxt6
title: Waiting List for Elective Surgeries: 10 Years of Demand Predictions per Specialty and Region in Chile

description: The dataset presented in this repository was created using de-identified historical surgical data (2012-2021) from 10 regional health services in Chile. To request access to the historical information, follow this link: https://www.portaltransparencia.cl/PortalPdT/ 

Data:
The dataset below covers the future predicted surgical demand (2022-2031) obtained through 100 ARIMA models considering the following specialties in each of the ten regions: Cardiology, head and neck, ear nose and throat, plastic surgery, gastroenterology, gynecology and obstetrics, neurology and neurosurgery, ophthalmology, traumatology, and urology and nephrology.
Furthermore, three different demand scenarios are provided per region, specialty, and year. The scenarios are low, medium, and high demand, considering a 95% prediction interval. 

The attached data table (8x1001) has the following structure:
Column 1 presents a numerical regional health service ID.
Column 2 presents a numerical specialty ID.
Column 3 presents the year of prediction.
Column 4 presents the predicted medium demand scenario.
Column 5 presents the predicted low-demand scenario.
Column 6 presents the predicted high-demand scenario.
Column 7 presents the regional health service name.
Column 8 presents the specialty name. 

Feel free to contact us if you have any questions about the dataset.
DOI: 10.17632/sgvmg6c9zz
title: RCEP on the Industrial and Innovation Chains of China's Textile and Clothing Industry

description: The dataset comprises trade volume and proportion data of China's textile and clothing exports to the 14 member countries of the Regional Comprehensive Economic Partnership (RCEP) for the year 2022. It includes information on export values in billions of dollars, year-on-year export growth percentages, and the proportion of exports within the RCEP region. Additionally, the dataset contains export growth rates of various textile machinery products from China to RCEP countries compared to global exports, as well as details on tariff reduction and export growth of textiles exported by China to Japan. The data provides insights into the dynamics of textile trade within the RCEP region and its implications for the textile industry supply chain.
DOI: 10.17632/w4xsbbymn8
title: Loneliness_Data

description: The data included basic details about the students and their responses to the 20-item UCLA Loneliness Scale.
DOI: 10.6084/m9.figshare.14955465.v1
title: Efficacy of Phonemic Awareness_Supplemental Materials_Codebook.xlsx

description: Codebook for meta-analysis of Phonemic Awareness studies
DOI: 10.6084/m9.figshare.1612169.v1
title: PIUQ-SF-6

description: Dataset linked to the following paper: Zsolt Demetrovics, Orsolya Király, Koronczai Beatrix, Mark D. Griffiths, Katalin Nagygyörgy, Zsuzsanna Elekes, Domokos Tamás, Bernadette Kun, Gyöngyi Kökönyei, Róbert Urbán (2015): Psychometric Properties of the Problematic Internet Use Questionnaire Short-Form (PIUQ-SF-6) in a Nationally Representative Sample of Adolescents. Manuscript.
DOI: 10.6084/m9.figshare.28024610.v2
title: Alpha and Phi LUTs for Quantifying Lifetime Uncertainty in Gated-ICCD Fluorescence Lifetime Imaging

description: Alpha and Phi LUTs generated from FLI experimental results.
DOI: 10.6084/m9.figshare.28080359.v2
title: Supplementary Material for: “The Road Less Traveled” - Ciliary Sulcus Implantation of the Preserflo MicroShunt

description: Introduction Herein, we report on the option and clinical advantage of the Preserflo MicroShunt insertion into the posterior chamber ciliary sulcus in a patient with advanced pseudo-exfoliation glaucoma at a high risk of corneal decompensation.
Case presentation We describe a 64-year-old advanced pseudoexfoliation glaucoma patient who despite maximal tolerated medical therapy and two failed glaucoma surgeries, still suffered from uncontrolled intraocular pressure (IOP) of 36mmHg in his left eye. The patient underwent the implantation of the Preserflo MicroShunt. The shunt was placed nasally into an area of unscarred conjunctiva, with the anterior part of the shunt inserted into the ciliary sulcus. Postoperatively, the patient’s IOP dropped to 6 mmHg on the first day and stabilized at 11 mmHg at the 6-month mark. An elevated, posteriorly located bleb was observed, and the patient no longer required additional topical medications. Endothelial cell (EC) count remained stable with no signs of corneal edema. The patient did not experience any serious post-operative complications.
Conclusion Implantation of the Preserflo MicroShunt into the ciliary sulcus appears to be a viable option for patients at high risk of corneal decompensation, hence, offering effective IOP control while minimizing EC loss. Further studies with larger patient groups are warranted to better evaluate the safety and efficacy of this technique.
DOI: 10.6084/m9.figshare.28927151.v1
title: data & R code_20250504.zip<b>Plant invasion decreases the likelihood of community persistence </b><b>through asymmetric competition</b>

description: Plant invasion is a significant driver of species loss in ecological communities. However, projecting its impact on multi-species coexistence remains a challenge. Here, we conducted pairwise experiments with five native and five non-native species,using the Ricker model to estimate interaction coefficients and population growth rates. We assessed the impact of non-native species on community persistence potential through a structural approach that integrates multi-species interactions and estimates coexistence probabilities. We found that community persistence potential generally declined after invasion, with the feasibility domain (i.e., the probability that all species co-occur simultaneously) becoming more asymmetric as more native species were replaced by non-native ones. Interestingly, non-native species were more likely to be excluded first under random environmental perturbations in communities where they were dominant. Our findings highlight the importance of clarifying species interaction structure under random disturbances in shaping community persistence and suggest tailored invasion management strategies to optimize resource allocation.
DOI: 10.6084/m9.figshare.3407182.v1
title: Machine Learning ideas

description: Annotated text data of the machine learning ideas. I have also included a more readable pdf. <br>They include the idea copied from the post it notes plus my annotations with possible themes.
DOI: 10.6084/m9.figshare.5128876.v1
title: Supplementary Material for: Prevalence and Clinical Relevance of IgE Sensitization to Profilin in Childhood: A Multicenter Study

description: <b><i>Background:</i></b> Little is known about the prevalence and clinical relevance of hypersensitivity to the plant panallergen profilin in children. <b><i>Objectives:</i></b> The present study aimed to investigate prevalence, risk factors and clinical relevance of profilin sensitization in a large cohort of Italian children of different ages living in different geographic areas. <b><i>Methods:</i></b> Children with pollen allergy enrolled by 16 pediatric outpatient clinics sited in three main geographic areas of Italy were studied. SPT were carried out with commercial pollen extracts and a commercial purified date palm pollen profilin. IgE specific for allergenic pollen molecules, Phl p 12 (grass profilin) and Pru p 3 (peach lipid transfer protein) were tested by ImmunoCAP FEIA. <b><i>Results:</i></b> IgE to Phl p 12 (≥0.35 kU/l) was observed in 296 of the 1,271 participants (23%), including 17 of the 108 (16%) preschool children. Profilin SPT was positive (≥3 mm) in 320/1,271 (25%) participants. The two diagnostic methods were concordant in 1,151 (91%, p &lt; 0.0001) cases. Phl p 12 IgE prevalence declined from northern to southern Italy and was directly associated with IgE to Phl p 1 and/or Phl p 5 and Ole e 1. Among children with IgE to Phl p 12, OAS was provoked by kiwi, melon, watermelon, banana, apricot and cucumber. <b><i>Conclusions:</i></b> Profilin sensitization is very frequent among pollen-allergic children, occurs at a very young age and contributes to the development of childhood OAS with a typical pattern of offending foods. Pediatricians should always consider IgE sensitization to profilin while examining pollen-allergic children, even if they are at preschool age.
DOI: 10.17632/md5w4f5fyr
title: An Experimental Study on Monitoring Wave Profiles with LiDAR Remote Sensing

description: Experimental data of paper "An Experimental Study on Monitoring Wave Profiles with LiDAR Remote Sensing".
Please address all correspondence concerning this file to me at zhanglipeng@hhu.edu.cn.
DOI: 10.17632/x7ypgrzr3m
title: 2022 Brazilian election Twitter dataset

description: This dataset presents the anonymized interaction retweet network collected during the 2022 Brazilian elections. For constructing our dataset, we used a query composed of a list of election-related words in Portuguese: "eleição OR eleições OR eleitoral OR eleitorais". Data collection resulted in more than 15 million tweets (88.4% of retweets). In this dataset, we included only retweet relations between users. The file is in GML graph format. The links have attributes that reflect the dates of the interactions.
DOI: 10.6084/m9.figshare.11787366.v1
title: The clinical perioperative data of patients performed laparoscopic distal pancreatectomy or laparoscopic spleen-preserving distal pancreatectomy with simulation by three-dimensional virtual endoscopy.xlsx

description: The clinical perioperative data of patients performed laparoscopic distal pancreatectomy or laparoscopic spleen-preserving distal pancreatectomy with simulation by three-dimensional virtual endoscopy.
DOI: 10.6084/m9.figshare.25485865.v1
title: Epidemiological data.xlsx

description: This data was used in a study titled 'OPTIMAL NON-PHARMACEUTICAL INTERVENTIONS CONSIDERING LIMITED HEALTHCARE SYSTEM CAPACITY AND ECONOMIC COSTS IN THE REPUBLIC OF KOREA' and was provided by the Korea Disease Control and Prevention Agency (KDCA).
DOI: 10.6084/m9.figshare.26334826.v1
title: The genomic annotation-related data for <i>Schizothorax </i><i>macropogon</i>

description: This data comes from Marine Ecological Genomics Lab, School of Marine Sciences, Sun Yat-Sen University, China.In this study, we assembled the chromosome-scale genome sequence of <i>S. macropogon</i> utilizing a combination of MGI short reads, PacBio long reads, and Hi-C technology. Following redundancy removal and Hi-C scaffolding, 99.4% of the assembly, totaling 1,4 Gb, was anchored to 25 pseudo-chromosomes, yielding a scaffold N50 of 44.02 Mb with 120 scaffolds. Annotation revealed 704.76 Mb of repetitive sequences, predominantly consisting of DNA transposons (340.87 Mb, 23.99%), LINEs (99.45 Mb, 7.00%), and LTRs (56.30 Mb, 5.89%).
DOI: 10.17632/w33yb7gsy4
title: Supplementary files: Long term safety of nine systemic medications for psoriasis: a cohort study using the Biobadaderm Registry

description: Supplementary Table 1S. Crude incidence rate ratios and adjusted incidence rate ratios of the adverse effects for each drug. Supplementary Table 2S. Detailed adverse events for each drug compared to MTX. Only those AE included in groups with a decreased rate ratio (IRR &lt; 1, green in Table 3) and highly increased rate ratio (IRR &gt; 5, red in Table 3) are shown.
DOI: 10.6084/m9.figshare.12220376.v2
title: IBD map construction

description: A IBD map was constructed of contributions from the twenty-four founders onto the 1,404 progeny lines using a hidden Markov model (HMM) with several modifications on the study of Mott et al., (2000). In the modified HMM model, the hidden states are the progenitor IBD states, and the observed states are the SNP genotypic calls, which can be used undoubtedly to other multi-parental populations.
DOI: 10.6084/m9.figshare.18583778.v1
title: Over-activation of hepatic mTORC1 is associated with low transcriptional activity of transcription factor EB and lysosomal dysfunction in dairy cows with clinical ketosis

description: <b>Supplemental Table S1. </b>The basal diet formulation.<b>Supplemental Table S2.</b> The basic description of the control and ketotic cows.<br><b>Supplemental Table S3</b><b>.</b> The primer sequences (For, forward; Rev, reverse).
DOI: 10.6084/m9.figshare.22153580.v1
title: Gap-free Assembly and Annotation of Neophocaena asiaeorientalis

description: Neaa: Neophocaena asiaeorientalis ssp. asiaeorientalis
Neas: Neophocaena asiaeorientalis ssp. sunameri
v1 : We assembled these two genomes with Pacbio HiFi, Ultra long ONT and HiC reads.
<br>
DOI: 10.6084/m9.figshare.23498258.v3
title: Data and codes for SSL-RF_2023.zip

description: The data and codes for the paper titled “Identifying the cargo types of road freight with semi-supervised trajectory semantic enhancement”.