cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.cs44q29/13
title: Askew, A. & Wellman, C. 2018 - Supplementary Chart S3 - Crémenes-Las Salas

description: A StrataBugs chart of the palynology of the Crémenes-Las Salas section
DOI: 10.5061/dryad.d6d5011/1
title: Code and data for Cooper, JC: Niche morphology through geographic space

description: R code for reproducing the results found in the following paper: doi:10.1111/jav.01771.
DOI: 10.5061/dryad.dv15kp5/1
title: Supplementary Data Set 1

description: List of the reviewed materials.
DOI: 10.5061/dryad.dv15kp5/2
title: Supplementary Data Set 2

description: List of several taxa used for comparison and performed the phylogenetic analysis.
DOI: 10.5061/dryad.f36h3n1/1
title: flume_community
DOI: 10.5061/dryad.f36h3n1/3
title: Water chemistry

description: Water chemistry (pH, nitrate, ammonium, soluble reactive phosphorus) in each flume at the end of the experiment.
DOI: 10.5061/dryad.f36h3n1/4
title: Periphyton photosynthetic rate and chemistry

description: End of experiment rates of photosynthesis and chemistry (C, N, and P) of periphyton
DOI: 10.5061/dryad.g9v97vq/7
title: Moore_et_al_ELE_WingColor_Thx.Color
DOI: 10.5061/dryad.g9v97vq/8
title: Moore_et_al_ELE_mass_WingColor_comparison
DOI: 10.5061/dryad.k2v2006/2
title: Dietrich_Rousettus_FastqFiles
DOI: 10.5061/dryad.k2v2006/4
title: Dietrich_Rousettus_Metadata_TableS2
DOI: 10.5061/dryad.k2v2006/5
title: Dietrich_Rousettus_Metadata_TableS1_FigureS1
DOI: 10.5061/dryad.kh0qh06/1
title: Appendix S1: Corrected and harmonized dataset

description: Content:
-	Cleaned datasets
-	Conflictive dataset
-	Duplicated (removed) datasets
-	Sampling coordinates
-	Error correction log
-	.rwl files metadata
DOI: 10.5061/dryad.kh0qh06/2
title: ITRDB-Rscript

description: R code used for analysis and PSI generation
DOI: 10.5061/dryad.n4d73sg/1
title: Gene expression during parental provisioning directly to offspring in a burying beetle

description: Gene expression for multiple genes defined a-priori as associated with parental care. This file contains expression in high-caring and low-caring females.
DOI: 10.5061/dryad.nk301fs/1
title: Szigeti_et_al_R_scripts.zip: data sets, R scripts and figures.

description: The archive Szigeti_et_al_R_scripts.zip includes the original data sets on Clouded Apollo butterflies' flower visitation and flower abundances of the 4 most visited flowering species, together with derived (e.g. aggregated) data sets, all R scripts and figures.

R scripts:
1. Szigeti_et_al_001_Data_frames_and_descriptive_statistics.R transforms raw data into dataframes used in further analyses and includes descriptive statistics.
2. Szigeti_et_al_002_PSi_full_PSi_actual.R calculates population visit proportions and proportional diet similarity indices (PSi-s).
3. Szigeti_et_al_003_PSi_randomized_ttest.R runs a randomized paired t-test to compare PSi-actual and PSi-full.
4. Szigeti_et_al_004_Cluster_analysis.R carries out a cluster analysis to group individuals according to diet.
5. Szigeti_et_al_005_Figure_1.R creates Figure 1 and calculates descriptive statistics.
6. Szigeti_et_al_006_Figure_2.R analyses the relationship between diet overlap (PSi-j) and temporal distance between individual pairs and creates Figure 2.
7. Szigeti_et_al_007_Appendix_Fig1.R creates Figure 1 of the Appendix, presenting the additional 48 individuals being observed &lt;8 times visiting flowers.
DOI: 10.5061/dryad.q5p514v/2
title: Neighbors

description: Characteristics of trees and shrubs in the neigborhood.
DOI: 10.5061/dryad.r12cq4r/1
title: Plant species of the Aleutians

description: A matrix of plant species vs. species characteristics (taxonomy, island occurrence, phenotype). See README.txt for metadata.
DOI: 10.5061/dryad.r4599c5/1
title: Hughes et al 2018 ME Data

description: This file contains flowering data, germination test results, CDT results, and relative gene expression data for Hughes et al 2018.
DOI: 10.5061/dryad.sp2ft6s/1
title: Data Set S1

description: Raw stage-specific body size data for the marine planktonic copepod species used in this study.
DOI: 10.5061/dryad.tg706dv/1
title: site1

description: Site 1 -- lake sturgeon population that spawn in the Upper Black River, MI.
DOI: 10.5061/dryad.tg706dv/2
title: site2

description: Site 2 -- lake sturgeon population that spawn in the Upper Black River, MI.
DOI: 10.5061/dryad.tg706dv/3
title: site3

description: Site 3 -- lake sturgeon population that spawn in the Upper Black River, MI.
DOI: 10.5061/dryad.tg706dv/4
title: site4

description: Site 4 -- lake sturgeon population that spawn in the Upper Black River, MI.
DOI: 10.5061/dryad.tk82cd1.2
title: Data from: Climate change and the latitudinal selectivity of ancient marine extinctions
DOI: 10.5061/dryad.tk82cd1.2/1.2
title: Post-Cambrian Phanerozoic raw occurrences

description: This is the raw occurrence dataset used for analyses, downloaded from the Paleobiology Database (http://www.paleobiodb.org/) on 18th December ‎2017
DOI: 10.17632/3z8dcg9s45.1
title: Data for: Sensing of airborne molecular contaminants based on microfiber coupler with mesoporous silica coating
DOI: 10.17632/r7vzs2gt7x.1
title: Data for: Single-cell transcriptome profiling of the Ciona larval brain

description: THxFascin bulk RNAseq analysis from Sharma et al. 2018. Read counts generaed by Rsubread/featureCounts (see materials and methods for details).
DOI: 10.17632/xygykk7772.1
title: Data for: Ultra-high strength circular short CFST columns: Axisymmetric analysis, behaviour and design

description: The Python script is given for the simulation of ultra-high strength circular CFST short columns under axial compression. The script can be run by selecting File&lt;
DOI: 10.5061/dryad.06q7n29/1
title: Data from 'Priority effects' experiment
DOI: 10.5061/dryad.1c9g5mm.3/19.3
title: params_Darter_m20_RAxML

description: Pyrad parameter file for minimum 20 samples per locus assembly.
DOI: 10.5061/dryad.1c9g5mm.3/20.3
title: params_Darter_m30_RAxML

description: Pyrad parameter file for minimum 30 samples per locus assembly.
DOI: 10.5061/dryad.1c9g5mm.3/21.3
title: Figure A1

description: Figure A1. Species trees inferred by tetrad, with bootstrap support values = 100% unless indicated. Nodes with less than 50% boostrap support have been collapsed. White nodes represent topological conflicts between the tetrad min4 tree and min30 tree. Gray nodes represent topological conflicts between either of the tetrad trees and the RAxML tree (Fig. 1). Black nodes represent topological conflicts between the tetrad min4 tree and m30 tree plus conflict between either of the tetrad trees and the concatenated RAxML tree.
DOI: 10.5061/dryad.1c9g5mm.3/22.3
title: Figure A2

description: Figure A2. ASTRAL species tree. Nodes have local posterior probability = 1.0 unless otherwise noted. Branch lengths are in coalescent units. ASTRAL cannot estimate terminal branch lenghs, so all terminal branches arbitrarily = 1.0 coalescent units. Black nodes represent topological conflicts between the ASTRAL species tree and the concatenated RAxML tree.
DOI: 10.5061/dryad.1c9g5mm.3/23.3
title: Figure A3

description: Figure A3. Primary concordance tree. Species sampled for each clade are indicated below the clade names. Nodes are labeled with concordance factors, 95% CI in parentheses. Dotted lines indicate conflicting topologies with concordance factor 95% CIs that overlap with the concordance factor 95% CI of a bipartition in the primary concordance tree.
DOI: 10.5061/dryad.1c9g5mm.3/24.3
title: Figure A4

description: Figure A4. Primary concordance tree. Species sampled for each clade are indicated below the clade names. Nodes are labeled with concordance factors, 95% CI in parentheses.
DOI: 10.5061/dryad.1c9g5mm.3/25.3
title: Figure A5

description: Fig. A5. Time-calibrated maximum clade credibility species tree inferred using SNAPP with all unlinked SNPs shared by the eleven sampled taxa. Grey bars on the nodes indicate 95% highest posterior density for the node heights. Bayesian posterior support is 1.0 unless otherwise labeled. Arrows indicate the potential window for introgression between the stem lineage of Allohistium and the stem lineage of Simoperca.
DOI: 10.5061/dryad.1c9g5mm.3/26.3
title: Table A4

description: Table A4. Results of the first set of D-statistic tests (Fig. 4).
DOI: 10.5061/dryad.1c9g5mm.3/27.3
title: Table A5

description: Table A5. Results of the first set of D-statistic tests, grouped by P2 taxa + P3 clade. Proportion of D-statistic tests significantly different from 0 after adjusting for multiple comparisons (alpha = 0.05).
DOI: 10.5061/dryad.1c9g5mm.3/28.3
title: Table A6

description: Table A6. Results of the first set of D-statistic tests, grouped by P3 taxa. Proportion of D-statistic tests significantly different from 0 after adjusting for multiple comparisons (alpha = 0.05).
DOI: 10.5061/dryad.35n1163/1
title: Periploca laevigata phenotypic measurements

description: Phenotypic measurements of 286 seedlings of Periploca laevigata plants grew under common garden conditions and representing 16 island and mainland populations. Abbreviations: LS (leaf size), SER (shoot elongation rate), Lbiomass (percentage of leaf biomass), tann (leaf tannin concentration), IL (internode lenght).
DOI: 10.5061/dryad.3bb462v/1
title: Supplementary file 1 Occurrences of species left in open nomenclature

description: This files lists published material included in the taxa Davidonia corrugata, Xianfengella yatesi, Pelagiella subangulata and Anabarella australis. These have been included here for convenience as they are referred to in the main text, but not typically included in systematics sections for specimens with only tentative affinities for previously described species.
DOI: 10.5061/dryad.3g14b02/1
title: Silverio_et_al_2018_joecol_master_windstorm

description: Post-windstorm inventory of tree damage conducted on the Tanguro Farm, in Mato Grosso, Brazil. The columns names are as follows: "genera" = the scientific name of genus; "transect" = each of transects; "xx" = long utm; "yy" = lat utm; "x" =  x distance from the plot corner; "y" = x distance from the plot corner (edge distance); "plot" = fire treatment plots; "DBH" = diameter at breast height (1.3 m); "wood_density" =  wood density value; "fire_scar" = post-burn scars present (P) or absent (A); "neighbors" = number of neighbors (20 m);  "snapped, uprooted, and crown-damage" = 1 indicate damage.
DOI: 10.5061/dryad.3mg69k5/1
title: GOA_salmon_covariates

description: Six climate variables related to salmon production.
DOI: 10.5061/dryad.3mg69k5/2
title: sockeye_SR_data

description: Sockeye salmon spawner-recruit data.
DOI: 10.5061/dryad.3mg69k5/3
title: chum_SR_data

description: Chum salmon spawner-recruit data.
DOI: 10.5061/dryad.3mg69k5/4
title: pink_SR_data

description: Pink salmon spawner-recruit data.
DOI: 10.5061/dryad.3mg69k5/5
title: winter_npgo_pdo

description: Winter values of the PDO and NPGO.
DOI: 10.5061/dryad.3mg69k5/6
title: npgo

description: NPGO values.
DOI: 10.5061/dryad.5mr10r5/1
title: Data CORT Incub Abandon

description: Corticosterone data at first capture and nest abandonment status
DOI: 10.5061/dryad.5mr10r5/2
title: Data CORT Time serie

description: Corticosterone data for each sample (baseline, stress-induced, post-dex)
DOI: 10.5061/dryad.5mr10r5/3
title: Data Mass change

description: Body mass data at first capture and second capture in females that did not abandoned.
DOI: 10.5061/dryad.5mr10r5/4
title: Data Dex validation

description: Corticosterone data for dexamethasone validation experiment.
DOI: 10.5061/dryad.62dk17g/1
title: Hahn_AmNat18_SiteInfo

description: This file contains information on latitude/longitude, bioclimatic information and soil characteristics.
DOI: 10.5061/dryad.62dk17g/2
title: Hahn_AmNat18_NaturalTraits

description: This file contains plant functional trait data measured on plants growing in natural populations.
DOI: 10.5061/dryad.62dk17g/4
title: Hahn_AmNat18_Rcode

description: R code to conduct analyses presented in the paper.
DOI: 10.5061/dryad.664h2vf/5
title: Supplemental_Data_table_1

description: Supplemental Data Table 1. Estimate of w values based on the holotype of Actinoporella campanensis (Azéma & Jaffrezo) n. comb. d, inner diameter; D, outer diameter; k, central cavity-intercept ratio (see Supplemental data set); w’, number of laterals cut by the intercept; w, number of laterals in a whorl.
DOI: 10.5061/dryad.69161bg/1
title: Allen et al - Proceedings B Supplementary Data - Raw Data

description: This file contains the raw song transcriptions for all songs used in every study year (2002-2014), the data used to create the complexity measures, and the data used to create the individuality metric.
DOI: 10.5061/dryad.6nc5572/1
title: germination and mortality data

description: Please see README
DOI: 10.5061/dryad.75fq000/1
title: Data and code
DOI: 10.5061/dryad.7r22vb1/1
title: red_deer_microbiome_16S
DOI: 10.5061/dryad.8h36t01/1
title: Data from: A hierarchical Bayesian approach for handling missing classification data

description: Datasets consist of classifications and counts of elk in Rocky Mountain National Park, and Estes Valley, CO. Data are separated into CSV files by each year of the study, except aggregated ground counts for the entire study. Other datasets include year separated transect level group classification counts, and the auxiliary data from yearling and adult female groups isolated from the overall transect level group counts.
DOI: 10.5061/dryad.9387k41/14
title: Supplementary 1
DOI: 10.5061/dryad.94v5f82/1
title: Fire regime attributes

description: Fire regime attributes (AAB, numfires, mean_doy, mean_firesize) for each 20-km cell with at least one fire. Cell id, latitude and longitude are provided as well as the homogeneous fire regime zone it pertains.
DOI: 10.5061/dryad.94v5f82/2
title: FireInsectData_forDryad

description: Fire regime and insect outbreak regime attributes (AAB, AADef, AABB) for each 20-km cell used to defined homogeneous disturbance (HDR) regime zones. HDR zone id, cell id, cell longitude and latitude are also given.
DOI: 10.5061/dryad.9sv4765/10
title: PLOT

description: Location and site information
DOI: 10.5061/dryad.9sv4765/11
title: COND

description: Forest attributes
DOI: 10.5061/dryad.9sv4765/7
title: DWM_COARSE_WOODY_DEBRIS

description: Detailed information for individual pieces of CWD sampled on eot
DOI: 10.5061/dryad.9sv4765/8
title: REF_SPECIES

description: Estimation constants by tree species type group needed for producing plot and population estimates of CWD
DOI: 10.5061/dryad.9sv4765/9
title: REF_FOREST_TYPE_GROUP

description: Estimation constants by forest type group needed for producing plot and population estimates of duff, litter, FWD, and piles of CWD
DOI: 10.5061/dryad.cm7r1q2/3
title: Wyatt et al_2018_Feeding

description: Daily feeding data from captive whale sharks in kg
DOI: 10.5061/dryad.cs44q29/14
title: Askew, A. & Wellman, C. 2018 - Supplementary Table S1 - Count data

description: Count data for every studied site. + denotes a species is present, but outside the 200 count; interpreted as rare.
DOI: 10.5061/dryad.cs44q29/15
title: Askew, A. & Wellman, C. 2018 - Supplementary text

description: Geology of investigated localities and sample details
DOI: 10.5061/dryad.dt1h407/4
title: OR2016

description: Main orchard experiment in 2016. Refer to METADATA file for description.
DOI: 10.5061/dryad.dt1h407/5
title: Yield2016

description: Yield data from the main orchard experiment in 2016. Refer to METADATA file for description.
DOI: 10.5061/dryad.dt1h407/6
title: 2018-12-07_fecundity_Pjap_marigold

description: Fecundity data of Propylea japonica fed with Aphis citricola and Calendula officinalis flowers. Refer to METADATA file for description.
DOI: 10.5061/dryad.dt1h407/7
title: 2018-12-07_longevity_Pjap_marigold

description: Longevity data of Propylea japonica fed with Aphis citricola and Calendula officinalis flowers. Refer to METADATA file for description.
DOI: 10.5061/dryad.dt1h407/8
title: Flight_mill

description: Data from the flight mill experiment. Refer to METADATA file for description.
DOI: 10.5061/dryad.dt1h407/9
title: Olfactometre

description: Data from the olfactometre experiment. Refer to METADATA file for description.
DOI: 10.5061/dryad.jn8hj0t/1
title: 187_MPB_FemGenome

description: 175 Wild-caught and 13 lab-bred mountain pine beetle (Dendroctonus ponderosae) specimens from western Canada. Double-Digest RAD sequencing, aligned to the female D. ponderosae draft genome [Keeling et al. Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest. Genome Biology. 2013;14(3):1. doi:10.1186/gb-2013-14-3-r27], and compiled in STACKS
DOI: 10.5061/dryad.jt052vq/1
title: Mugabe Supplemental Table S1 through S8

description: Cold tolerance of chickpea, phenotypic and genotypic data files, SNPs associated with QTL conferring cold tolerance identified in a Cicer arietinum x C. reticulaturm RIL population.
DOI: 10.5061/dryad.r37bt93/1
title: Supplementary Dataset revised

description: This is the excel file with all the data included in the meta-analyses.
DOI: 10.5061/dryad.sh487nh/1
title: fat_data

description: These data were collected on Myotis lucifugus (little brown bats) in the northeastern United States and include measurements on life history (sex, age) and body condition (forearm length in millimeters, body mass in grams, and fat amount in grams). Method for measuring fat amount (fat.method) is indicated. The derived value, percent fat, is fat amount divided by body mass.
DOI: 10.5061/dryad.tk82cd1.1
title: Data from: Climate change and the latitudinal selectivity of ancient marine extinctions
DOI: 10.5061/dryad.tk82cd1.2/2.2
title: Geological stage boundaries for analysis

description: These give the temporal bins that the occrrence and environmental data were binned into.
DOI: 10.5061/dryad.tk82cd1.2/3.2
title: Overall extinction rates

description: This file contains 100 subsampled iterations for the overall extinction rates to plot a basic version of Figure 1. Use with 'TimeBinningCode.R'
DOI: 10.5061/dryad.tk82cd1.2/4.2
title: Tropical and temperate genus extinction rates

description: This file contains 100 subsampled iterations for the tropical and temperate affinity genera extinction rates to plot a basic version of Figure 1. Use with 'TimeBinningCode.R'
DOI: 10.5061/dryad.tk82cd1.2/5.2
title: R code for time binning and Figure 1

description: This code allows for binning of the raw data as in the analysis to some substage levels, then allows reading in of the original pre-calculated extinction rates for the Phanerozoic, and allows a basic version of Figure 1 to be plotted. To perform the exact analyses, the reader is directed to the URL home of the R package divDyn.
DOI: 10.5061/dryad.tk82cd1.2/6.2
title: Appendix: Supplementary methods and results.

description: This zip archive contains a PDF file that includes supplementary methodological details, and details and results of sensitivity and exploratory analyses that support the manuscript. It includes figures S1 to S9 and tables S1 to S3. Tables S1 to S3 are also included in .csv format to facilitate use.
DOI: 10.5061/dryad.vn806pd/1
title: Supplementary Material - Inflammation, Cog Decline (Neurology)

description: Supplementary material for article titled "Systemic inflammation during midlife and cognitive change over 20 years: The ARIC study."
DOI: 10.17632/m386f567g3.1
title: Data for: Dust Extinction towards the Type Ia Supernova 2012cu in NGC 4772

description: The observed color excesses of SN 2012cu corresponding to different epochs and wavelengths.
DOI: 10.5061/dryad.1c9g5mm.3/31.3
title: Table A7

description: Table A7. Results of the first set of D-statistic tests (Fig. 4), grouped by P1 taxa + P3 taxa. Proportion of D-statistic tests significantly different from 0 after adjusting for multiple comparisons (alpha = 0.05).
DOI: 10.5061/dryad.1c9g5mm.3/32.3
title: Table A8

description: Table A8. Results of the second set of D-statistic tests (Fig. 5).
DOI: 10.5061/dryad.1c9g5mm.3/33.3
title: MacGuigan&Near_appendix

description: Online appendix for "Phylogenomic signatures of ancient introgression in a rogue lineage of darters (Teleostei: Percidae)" by Daniel J. MacGuigan and Thomas J. Near. Table A1, A2, and A3 are included in this file.
DOI: 10.5061/dryad.3mg69k5/10
title: GOA_non-analogue_code_Figs_2-6

description: Code for Figs. 2-6.
DOI: 10.5061/dryad.3mg69k5/11
title: code for Fig. S2

description: Code for Fig. S2.
DOI: 10.5061/dryad.3mg69k5/12
title: readme

description: Details concerning data sources, data accession, and code hosting.
DOI: 10.5061/dryad.3mg69k5/7
title: pdo

description: PDO values.
DOI: 10.5061/dryad.3mg69k5/8
title: long_area_salmon_catch

description: GOA salmon commercial catch data.
DOI: 10.5061/dryad.3mg69k5/9
title: GOA_non-analogue_code_Fig_1

description: Code for Fig. 1.
DOI: 10.5061/dryad.3mt523q/10
title: ReadMe.Dryad
DOI: 10.5061/dryad.3mt523q/4
title: Rana.RSEM.counts.gonads.matrix
DOI: 10.5061/dryad.3mt523q/5
title: Unfiltered.Site.Calls.vcf.gz
DOI: 10.5061/dryad.3mt523q/7
title: Ammarnas.Sites.vcf
DOI: 10.5061/dryad.3mt523q/8
title: Kilpisjarvi.Sites.vcf
DOI: 10.5061/dryad.3mt523q/9
title: Tvedora.Sites.vcf
DOI: 10.5061/dryad.4fq355k/1
title: sequences

description: fungal ITS sequences
DOI: 10.5061/dryad.4fq355k/2
title: Soil chemical analyses

description: Soil chemical analyses
DOI: 10.5061/dryad.4fq355k/3
title: funguild results
DOI: 10.5061/dryad.6796b9j/1
title: Supplementary Figures Tables and Documents
DOI: 10.5061/dryad.6d5046c/1
title: Foraging duration in a scavenging experiment

description: Data comes from a scavenging experiment conducted in Tasmania, Australia, to investigate the effects of Tasmanian devil 
population declines on community-wide carrion consumption. Tasmanian pademelon (Thylogale billardierii) 
carcasses were experimentally placed at 96 locations among twelve independent study sites. See readme file for variable descriptions.
DOI: 10.5061/dryad.7368cc2/1
title: HDY-18-A0216RR

description: Simulation results files and data input files to replicate simulation experiments in QuLinePlus.
DOI: 10.5061/dryad.73q5474/1
title: Microhabitat_Use

description: This file contains data used to determine what microhabitats salamanders used and when they used them. The data file includes detailed comments on the column headers that explain each of the variables and attempt to clarify any part of the data that might be confusing.
DOI: 10.5061/dryad.73q5474/2
title: Microhabitat_Variation

description: This file contains data used to test part of our hypothesis that microhabitats differ in their moisture and temperature characteristics across elevation.  The analysis also includes variation across time.  The data file includes detailed comments on the column headers that explain each of the variables and attempt to clarify any part of the data that might be confusing.
DOI: 10.5061/dryad.73q5474/3
title: Pairwise_Comparisions

description: This file contains data used to test whether salamanders will preferentially utilize microhabitats that permit them to maintain consistent moisture and temperature levels. This was a paired analysis with each survey being broken into microhabitats where salamanders were found and where they were not found. For example, if during one survey salamanders were found under rocks and under woody debris, but not found under moss, leaf litter, above ground, or in trees.  Then we include mean temperature and water loss value for under rocks and woody debris for the presence pair and mean values for under moss, leaf litter, above ground, or in trees for the absence pair.  The data file includes detailed comments on the column headers that explain each of the variables and attempt to clarify any part of the data that might be confusing.
DOI: 10.5061/dryad.80df776/1
title: Data of the drill holes and ostracods drilled from the Danian of Argentina

description: Data of the drill holes and ostracods drilled from the Danian (Roca and Jagüel formations) of Argentina.