cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5985022
title: Bayesian Inference in the Presence of Intractable Normalizing Functions

description: Models with intractable normalizing functions arise frequently in statistics. Common examples of such models include exponential random graph models for social networks and Markov point processes for ecology and disease modeling. Inference for these models is complicated because the normalizing functions of their probability distributions include the parameters of interest. In Bayesian analysis, they result in so-called doubly intractable posterior distributions which pose significant computational challenges. Several Monte Carlo methods have emerged in recent years to address Bayesian inference for such models. We provide a framework for understanding the algorithms, and elucidate connections among them. Through multiple simulated and real data examples, we compare and contrast the computational and statistical efficiency of these algorithms and discuss their theoretical bases. Our study provides practical recommendations for practitioners along with directions for future research for Markov chain Monte Carlo (MCMC) methodologists. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.5985022.v1
title: Bayesian Inference in the Presence of Intractable Normalizing Functions

description: Models with intractable normalizing functions arise frequently in statistics. Common examples of such models include exponential random graph models for social networks and Markov point processes for ecology and disease modeling. Inference for these models is complicated because the normalizing functions of their probability distributions include the parameters of interest. In Bayesian analysis, they result in so-called doubly intractable posterior distributions which pose significant computational challenges. Several Monte Carlo methods have emerged in recent years to address Bayesian inference for such models. We provide a framework for understanding the algorithms, and elucidate connections among them. Through multiple simulated and real data examples, we compare and contrast the computational and statistical efficiency of these algorithms and discuss their theoretical bases. Our study provides practical recommendations for practitioners along with directions for future research for Markov chain Monte Carlo (MCMC) methodologists. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.5984980
title: A new kentriodontid (Cetacea: Odontoceti) from the early Miocene Astoria Formation and a revision of the stem delphinidan family Kentriodontidae

description: The Family Kentriodontidae is a diverse and abundant group of odontocetes from the late Oligocene and Miocene around the globe. Despite nearly a century of research on the group, the relationships across the family have remained poorly understood. Several recent studies have suggested that the family is polyphyletic and in need of major taxonomic revision. A new fossil stem delphinidan from the early Miocene of Washington State is described as <i>Wimahl chinookensis</i>, gen. et sp. nov., and is assigned to a revised Kentriodontidae. <i>Wimahl chinookensis</i> represents one of the oldest kentriodontids and is the northernmost kentriodontid described from the Pacific Ocean, extending their range in the eastern Pacific from central California up to Washington State. Its phylogenetic position relative to other stem delphinidans suggests that it is sister to <i>Kampholophos serrulus</i> from the middle Miocene Monterey Formation of California. Additional phylogenetic results guide the revision of stem delphinidans and new diagnosis and delimitation of the Family Kentriodontidae. http://zoobank.org/urn:lsid:zoobank.org:pub:2795E10A-EC6B-4FB6-8B7C-C6B80EAFB896 SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Peredo, C. M., M. D. Uhen, and M. D. Nelson. 2018. A new kentriodontid (Cetacea: Odontoceti) from the early Miocene Astoria Formation and a revision of the stem delphinidan family Kentriodontidae. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2017.1411357.
DOI: 10.6084/m9.figshare.5984980.v1
title: A new kentriodontid (Cetacea: Odontoceti) from the early Miocene Astoria Formation and a revision of the stem delphinidan family Kentriodontidae

description: The Family Kentriodontidae is a diverse and abundant group of odontocetes from the late Oligocene and Miocene around the globe. Despite nearly a century of research on the group, the relationships across the family have remained poorly understood. Several recent studies have suggested that the family is polyphyletic and in need of major taxonomic revision. A new fossil stem delphinidan from the early Miocene of Washington State is described as <i>Wimahl chinookensis</i>, gen. et sp. nov., and is assigned to a revised Kentriodontidae. <i>Wimahl chinookensis</i> represents one of the oldest kentriodontids and is the northernmost kentriodontid described from the Pacific Ocean, extending their range in the eastern Pacific from central California up to Washington State. Its phylogenetic position relative to other stem delphinidans suggests that it is sister to <i>Kampholophos serrulus</i> from the middle Miocene Monterey Formation of California. Additional phylogenetic results guide the revision of stem delphinidans and new diagnosis and delimitation of the Family Kentriodontidae. http://zoobank.org/urn:lsid:zoobank.org:pub:2795E10A-EC6B-4FB6-8B7C-C6B80EAFB896 SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Peredo, C. M., M. D. Uhen, and M. D. Nelson. 2018. A new kentriodontid (Cetacea: Odontoceti) from the early Miocene Astoria Formation and a revision of the stem delphinidan family Kentriodontidae. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2017.1411357.
DOI: 10.6084/m9.figshare.5984941
title: MSR18_replication_package.zip

description: Replication package for "Do Software Engineers use Autocompletion Features Differently Than Other Developers?" - MSR'18: 15th International Conference on Mining Software Repositories.<br>
DOI: 10.6084/m9.figshare.5984845
title: Testing Google Scholar Bibliographic Data

description: ris files downloaded from Google Scholar to evaluate the accuracy of the bibliographic data they make available
DOI: 10.6084/m9.figshare.5984845.v1
title: Testing Google Scholar Bibliographic Data

description: ris files downloaded from Google Scholar to evaluate the accuracy of the bibliographic data they make available
DOI: 10.6084/m9.figshare.5982427
title: Virfam annotation of viruses of the Nahant Collection.

description: Virfam annotation of the tailed viruses of the Nahant Collection -provides predicted morphotype and assignment to categories based on head-neck-tail modules.
DOI: 10.6084/m9.figshare.5982427.v1
title: Virfam annotation of viruses of the Nahant Collection.

description: Virfam annotation of the tailed viruses of the Nahant Collection -provides predicted morphotype and assignment to categories based on head-neck-tail modules.
DOI: 10.6084/m9.figshare.5982382
title: Correlation Matrix between wood and climate data

description: Correlation matrix at the tree level between wood properties and climate evaluated for the Pinus nigra growing in Portugal.
DOI: 10.6084/m9.figshare.5982382.v1
title: Correlation Matrix between wood and climate data

description: Correlation matrix between wood properties and climate
DOI: 10.6084/m9.figshare.5982352
title: Threat assessment of high-value medicinal plants of cold desert areas in Johar valley, Kailash Sacred Landscape, India

description: Cold desert regions harbor a unique habitat for a number of high-value medicinal plants (HMPs) and due to inaccessibility of medical facility, inhabitants of this region are highly dependent on medicinal plants. Over the years, with increasing demand for trade, extraction pressure on natural populations of these HMPs has grown substantially. This consequently has made such plants threatened in their natural habitats. However, quantification of threat intensity is lacking. For the first time, this study has attempted to identify and assess the ecological and threat status of HMPs from the cold desert area of Johar valley, West Himalaya, India. For ecological assessment, rigorous field surveys were conducted along the elevation gradient. The intensity of threat was evaluated by using rapid threat assessment (RTA) approach. A total of 22 threatened and high-value medicinal plants (THMPs) were identified from the region. Results of RTA placed <i>Betula utilis</i> and <i>Nardostachys jatamanasi</i> in the highest threat category. Roots/rhizomes were the frequently (55%) used plant parts, followed by inflorescence/fruit and stem/bark (18%) each. Overall, this study provides a clear picture of ecological and threat status of THMPs of the study area, which can effectively be utilized to develop a suitable conservation model for the region.
DOI: 10.6084/m9.figshare.5982352.v1
title: Threat assessment of high-value medicinal plants of cold desert areas in Johar valley, Kailash Sacred Landscape, India

description: Cold desert regions harbor a unique habitat for a number of high-value medicinal plants (HMPs) and due to inaccessibility of medical facility, inhabitants of this region are highly dependent on medicinal plants. Over the years, with increasing demand for trade, extraction pressure on natural populations of these HMPs has grown substantially. This consequently has made such plants threatened in their natural habitats. However, quantification of threat intensity is lacking. For the first time, this study has attempted to identify and assess the ecological and threat status of HMPs from the cold desert area of Johar valley, West Himalaya, India. For ecological assessment, rigorous field surveys were conducted along the elevation gradient. The intensity of threat was evaluated by using rapid threat assessment (RTA) approach. A total of 22 threatened and high-value medicinal plants (THMPs) were identified from the region. Results of RTA placed <i>Betula utilis</i> and <i>Nardostachys jatamanasi</i> in the highest threat category. Roots/rhizomes were the frequently (55%) used plant parts, followed by inflorescence/fruit and stem/bark (18%) each. Overall, this study provides a clear picture of ecological and threat status of THMPs of the study area, which can effectively be utilized to develop a suitable conservation model for the region.
DOI: 10.6084/m9.figshare.5982343
title: Design of stochastic assembly lines considering line balancing and part feeding with supermarkets

description: This article aims to address the assembly line balancing problem (ALBP) and supermarket location problem (SLP) as two long-term interrelated decision problems considering the stochastic nature of the task times and demands. These problems arise in real-world assembly lines during the strategic decision-making phase of configuring new assembly lines from both line balancing and part-feeding (PF) aspects. A hierarchical mathematical programming model is developed, in which the first level resolves the stochastic ALBP by minimizing the workstation numbers and the second level deals with the stochastic SLP while optimizing the PF shipment, inventory and installation costs. The results of case data from an automotive parts manufacturer and a set of standard test problems verified that the proposed model can optimize the configuration of assembly lines considering both ALBP and SLP performance measures. This study also validates the effect of the stochastic ALBP on the resulting SLP solutions.
DOI: 10.6084/m9.figshare.5982343.v1
title: Design of stochastic assembly lines considering line balancing and part feeding with supermarkets

description: This article aims to address the assembly line balancing problem (ALBP) and supermarket location problem (SLP) as two long-term interrelated decision problems considering the stochastic nature of the task times and demands. These problems arise in real-world assembly lines during the strategic decision-making phase of configuring new assembly lines from both line balancing and part-feeding (PF) aspects. A hierarchical mathematical programming model is developed, in which the first level resolves the stochastic ALBP by minimizing the workstation numbers and the second level deals with the stochastic SLP while optimizing the PF shipment, inventory and installation costs. The results of case data from an automotive parts manufacturer and a set of standard test problems verified that the proposed model can optimize the configuration of assembly lines considering both ALBP and SLP performance measures. This study also validates the effect of the stochastic ALBP on the resulting SLP solutions.
DOI: 10.6084/m9.figshare.5982340
title: Data_YoungOld_LexicalBundleProcessing

description: Eye-tracking data of two groups of participants: people in their twenties and people in their late sixties / beginning seventies, consisting of 25 and 27 people respectively.<br>Participants had to read through a list of frequent Dutch trigrams which were presented one by one on a computer screen for 1,200 ms, with an interstimulus interval of 1,000 ms. <br><br>- dat_firstFixations.rda contains a dataframe with information on the durations of the first fixations. <br>- dat_secondFixations.rda contains a dataframe with information on the durations of the second fixations. <br>- firstFixX.rda contains information on the horizontal location of the first fixations on the screen in pixels.<br>- secondFixX.rda contains information on the horizontal location of the second fixations on the screen in pixels. <br>- ngrams.csv contains all trigrams used and their frequencies as found in the OpenSoNaR corpus (https://portal.clarin.nl/node/4195). <br>- plot_NumberFix, plot_FF, plot_SF: plots of the models of the number of fixations, the first fixations durations, and the second fixation durations<br>- OldYoung_Analyses *: R markdown files with the whole analysis process documented for analyses of the first fixation duration, second fixation durations, and the number of fixations.<br> <br>
DOI: 10.6084/m9.figshare.5982337
title: Respiration of soils from different land use plots on the Highfield experiment (Rothamsted) after addition of barley shoot powder and repeated dry:wet disturbances

description: The dataset contains the results of an experimental and modelling study to investigate the resilience of soils sampled from different land-uses to repeated drying and rewetting disturbances. Soils were sampled from the arable, grass, arable to grass reversion, grass to arable reversion and fallow plots of the Highfield long term experiment at Rothamsted Research, Harpenden, UK. They were then subjected to prescribed and controlled repeated drying and rewetting stresses. Prior to disturbance and after 1, 2, 3, 4, 7 and 12 drying and rewetting cycles barley shoot powder (5 mg) was added to the 0.5g soil samples and the respiration response observed at 6 min resolution. This dataset contains the raw respiration data from the soil samples as well as model parameters of a model fitted to these respiration profiles in order to characterise their response shape.<br>This work was supported by the Biotechnology and Biological Sciences Research Council [grant numbers BB/J000671/1, BB/J000671/2]; and the UK Department of Environment, Food and Rural Affairs). The Rothamsted Long-term Experiments National Capability (LTE-NCG) is supported by the Biotechnology and Biological Sciences Research Council; and the Lawes Agricultural Trust.<br>
DOI: 10.6084/m9.figshare.5982337.v1
title: Respiration of soils from different land use plots on the Highfield experiment (Rothamsted) after addition of barley shoot powder and repeated dry:wet disturbances

description: The dataset contains the results of an experimental and modelling study to investigate the resilience of soils sampled from different land-uses to repeated drying and rewetting disturbances. Soils were sampled from the arable, grass, arable to grass reversion, grass to arable reversion and fallow plots of the Highfield long term experiment at Rothamsted Research, Harpenden, UK. They were then subjected to prescribed and controlled repeated drying and rewetting stresses. Prior to disturbance and after 1, 2, 3, 4, 7 and 12 drying and rewetting cycles barley shoot powder (5 mg) was added to the 0.5g soil samples and the respiration response observed at 6 min resolution. This dataset contains the raw respiration data from the soil samples as well as model parameters of a model fitted to these respiration profiles in order to characterise their response shape.<br>This work was supported by the Biotechnology and Biological Sciences Research Council [grant numbers BB/J000671/1, BB/J000671/2]; and the UK Department of Environment, Food and Rural Affairs). The Rothamsted Long-term Experiments National Capability (LTE-NCG) is supported by the Biotechnology and Biological Sciences Research Council; and the Lawes Agricultural Trust.<br>
DOI: 10.6084/m9.figshare.5982328
title: Remembering, Reflecting, Returning: A Return to Professional Practice Journey Through Poetry, Music and Images

description: Our composition brings together poetry, music, images and personal narratives based around the experiences of an occupational therapist, Karen, who following a family career break, returned to her profession. Our work demonstrates collaborative research practices and illuminates our experiences and journeying as practitioner-artists/researchers/teachers. This autoethnographic inquiry employs bricolage, drawing on theory and hybridized methods, inspired by the notion of ‘returning to practice’. The conversations of Karen and Katherine (mentee and mentor) as qualitative data, analyzed, interpreted and made accessible through poetry and images – along with Peter’s musical and autobiographical compositions – explore possibilities to re-examine and share alternative avenues of scholarship and theoretical understanding, not least in redefining what contribution to knowledge that artistic processes and ‘artwork’ makes methodologically, pedagogically, aesthetically, and therapeutically. Our intention is to engage the reader-viewer-listener to (re)think, take notice, disrupt, re-examine and extend personal meanings about return to practice journeys, enabling each of us to benefit and be (re)inspired. We recast aspects of ‘knowing and experience’ metaphorically, to consider and express our sense of being and becoming in the world. Importantly, we seek to explore how arts informed ways of knowing and learning about the self and other can serve to enhance our students/researchers/practitioners learning experiences.
DOI: 10.6084/m9.figshare.5982328.v2
title: Remembering, Reflecting, Returning: A Return to Professional Practice Journey Through Poetry, Music and Images

description: Our composition brings together poetry, music, images and personal narratives based around the experiences of an occupational therapist, Karen, who following a family career break, returned to her profession. Our work demonstrates collaborative research practices and illuminates our experiences and journeying as practitioner-artists/researchers/teachers. This autoethnographic inquiry employs bricolage, drawing on theory and hybridized methods, inspired by the notion of ‘returning to practice’. The conversations of Karen and Katherine (mentee and mentor) as qualitative data, analyzed, interpreted and made accessible through poetry and images – along with Peter’s musical and autobiographical compositions – explore possibilities to re-examine and share alternative avenues of scholarship and theoretical understanding, not least in redefining what contribution to knowledge that artistic processes and ‘artwork’ makes methodologically, pedagogically, aesthetically, and therapeutically. Our intention is to engage the reader-viewer-listener to (re)think, take notice, disrupt, re-examine and extend personal meanings about return to practice journeys, enabling each of us to benefit and be (re)inspired. We recast aspects of ‘knowing and experience’ metaphorically, to consider and express our sense of being and becoming in the world. Importantly, we seek to explore how arts informed ways of knowing and learning about the self and other can serve to enhance our students/researchers/practitioners learning experiences.
DOI: 10.6084/m9.figshare.5982328.v1
title: Remembering, Reflecting, Returning: A Return to Professional Practice Journey Through Poetry, Music and Images

description: Our composition brings together poetry, music, images and personal narratives based around the experiences of an occupational therapist, Karen, who following a family career break, returned to her profession. Our work demonstrates collaborative research practices and illuminates our experiences and journeying as practitioner-artists/researchers/teachers. This autoethnographic inquiry employs bricolage, drawing on theory and hybridized methods, inspired by the notion of ‘returning to practice’. The conversations of Karen and Katherine (mentee and mentor) as qualitative data, analyzed, interpreted and made accessible through poetry and images – along with Peter’s musical and autobiographical compositions – explore possibilities to re-examine and share alternative avenues of scholarship and theoretical understanding, not least in redefining what contribution to knowledge that artistic processes and ‘artwork’ makes methodologically, pedagogically, aesthetically, and therapeutically. Our intention is to engage the reader-viewer-listener to (re)think, take notice, disrupt, re-examine and extend personal meanings about return to practice journeys, enabling each of us to benefit and be (re)inspired. We recast aspects of ‘knowing and experience’ metaphorically, to consider and express our sense of being and becoming in the world. Importantly, we seek to explore how arts informed ways of knowing and learning about the self and other can serve to enhance our students/researchers/practitioners learning experiences.