cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5454940.v1
title: Supplementary Material for: New Anti-Nephrin Antibody Mediated Podocyte Injury Model Using a C57BL/6 Mouse Strain

description: <b><i>Background:</i></b> Focal segmental glomerulosclerosis (FSGS) is considered a subset of the podocytopathies. The molecular pathogenesis of podocytopathy is still unknown. There has not been an experimental animal model of isolated podocytopathy induced by antibody in C57BL/6 strain, which is widely used as the genetic background. Nephrin is closely associated with the slit diaphragm of the glomerular podocyte, and has recently received attention as a potential therapeutic target. The function of nephrin, especially its role in FSGS development via podocytopathy, is being elucidated. We report our experience with a C57BL/6 FSGS model induced by polyclonal rabbit anti-mouse nephrin antibody (α-mNep Ab). <b><i>Methods:</i></b> α-mNep Ab, which was generated by genetic immunization, was administered into C57BL/6 mice at once, intravenously. Urinary protein excretion, the development of glomerulosclerosis and the number of podocyte in mouse kidney were evaluated. <b><i>Results:</i></b> The α-mNep Ab-induced FSGS was associated with massive proteinuria and nephrotic syndrome. In periodic acid-Schiff staining, FSGS was observed from day 7 after antibody injection. Podocyte numbers and podocyte marker (anti-Wilms tumor 1 and anti-synaptopodin)-positive areas were clearly decreased. These results suggest that this FSGS mouse model reliably reproduces the human nephrotic syndrome and FSGS. <b><i>Conclusion:</i></b> We succeeded in making the nephrotic syndrome model mice induced by α-mNep Ab using C57BL/6. This model may be useful for studying the mechanisms of podocytopathy.
DOI: 10.17632/kybzy5d84t
title: A numerical routine for the crossed vertex diagram with a massive-particle loop

description: We present an evaluation of the two master integrals for the crossed vertex diagram with a closed loop of top quarks that allows for an easy numerical implementation. The differential equations obeyed by the master integrals are used to generate power series expansions centered around all the singular points. The different series are then matched numerically with high accuracy in intermediate points. The expansions allow a fast and precise numerical calculation of the two master integrals in all the regions of the phase space. A numerical routine that implements these expansions is presented.
DOI: 10.6084/m9.figshare.26310520.v3
title: DRUG-seq with metabolites data

description: We provided the sequencing data obtained from this DRUG-seq experiment, including 364 treatments and 20 controls.We also provided all the metabolites used in this experiment along with their detailed information.The CIBERSORT results were also presented.
DOI: 10.17632/jxdrtfnsgy
title: Geiger et al 2023 - Figure 1B Western Blot

description: Raw Western Blot Images for Figure 1B (ERAAP and GAPDH)
DOI: 10.17632/752gg2p433
title: Exact solution procedures for project financing cost distribution: a joint perspective study on payment scheduling with discounted time/cost trade-offs

description: We are delighted to share the datasets created for the following research papers:

1. "An Exact Decomposition Technique for Deadline-Constrained Discrete Time/Cost Trade-off Problem with Discounted Cash Flows"
 - Published in Computers and Operations Research
 - (https://doi.org/10.1016/j.cor.2023.106491)
 - The dataset in the "DTCTP-NPV" folder has been meticulously organized to align with the experiments conducted in the paper.

2. "Exact Solution Procedures for Project Financing Cost Distribution: A Joint Perspective Study on Payment Scheduling with discounted time/cost trade-offs"
 - Submitted to Computers and Operations Research (DOI: to be updated when accepted)
 - The same dataset of DTCTP-NPV for the first submodule and the "DIF" folder dataset have been meticulously organized to align with the experiments conducted in the paper.

Each dataset instance adheres to the instructions outlined in both papers (refer to Section 5 in each paper) and is categorized based on the specific settings explored (refer to Table 2 in the first paper and Table 1 in the second paper). Notably, we have included solutions for 32,400 introduced settings using the AGBD algorithm for the first paper and BBCP as the superior algorithm for the second paper. Additionally, 23,400 instances of the second submodule of paper 2, where CP shows superiority over other solution procedures, have been uploaded separately for each setting. For a comprehensive overview of the results, please refer to the corresponding tables presented in the manuscript. A readme file in the root folder provides an introduction to the file structure and instructions for usage.
DOI: 10.17632/fgrbgf3bwx
title: Data for: "Barriers, Adaptability, Employability and Satisfaction: Career Perceptions of Undergratuate Administration Students" published by RAC-Revista de Administração Contemporânea

description: This database refers to a research that aimed to verify the influence of career barriers’ perceptions and adaptability on employability and career satisfaction among undergraduate Administration students of Higher Education Institutions. A survey-based research was carried out among 358 students from the last semesters of graduation. The database contains three file groups: 1 - Base with scores to each construct / software Statistical Package for Social Sciences (SPSS) (.sav); 2 - Codes / Excel (.xlsx); e, 3 - Template to Structural Equation Modeling / AMOS Graphics - SPSS (.AmosLock, .amp, .amw).
DOI: 10.6084/m9.figshare.14290304.v1
title: Reliability of plantar pressure and postural control measures of children from 4 to 12 years: analysis by baropodometry

description: Abstract Aim: Baropodometry is used to map pressure areas and plantar pressure oscillation, however, children’s evaluation reliability is not established. To establish the intra-rater and inter-rater reliability of baropodometry for analysis of plantar support and postural control (stabilometry) of children. Materials and Methods: Reliability study. The sample consisted of 112 healthy children of both sexes; aged 4 to 12 years old. For the baropodometer analysis, children were positioned in orthostatic position, bipodal support, with parallel and bare feet during four rounds of 15-second evaluations, executed by two independent evaluators. In order to establish the reliability of the results at different age ranges, participants were divided into two groups: children ages 7 years and younger (n = 44) and children aged 8 to 12 years old (n = 68). The variables analyzed were pressure area and maximum plantar pressure, area, and amplitude of oscillation of the center of pressure. Results: Reliability was rated from good to excellent for the intra- and inter-evaluators (ICC 0.81-0.86 and ICC 0.87-0.95, respectively) on plantar pressure variables, and poor to moderate for the center of pressure oscillations (ICC 0.33-0.55; ICC 0.47-0.57, intra and inter-evaluators, respectively). Conclusion: Excellent baropodometry reliability was observed when analyzing children’s plantar pressure at different age groups, and a single evaluation established reliable results. However, the stabilometry analysis with a baropodometer has poor reliability, and therefore, it should not be used for children aged 4 to 12 for postural control.
DOI: 10.6084/m9.figshare.6491843.v1
title: Supplementary Material for: Cognitive-Behavioral and Psychodynamic Therapy in Adolescents with Social Anxiety Disorder: A Multicenter Randomized Controlled Trial

description: <b><i>Background:</i></b> Although<b><i></i></b> social anxiety disorder (SAD) has an early onset and is frequently found in adolescence, evidence for psychotherapeutic treatments of SAD in adolescents is rather scarce. Within the Social Phobia Psychotherapy Research Network (SOPHO-NET), we examined the efficacy of cognitive-behavioral (CBT) and psychodynamic therapy (PDT) compared to a waiting list (WL) in these patients. <b><i>Methods:</i></b> In a multicenter randomized controlled superiority trial, 107 patients, aged 14–20 years, were randomized to CBT (<i>n</i> = 34), PDT (<i>n</i> = 34), or WL (<i>n</i> = 39). Assessments were made at baseline, at the end of treatment, and 6 and 12 months after termination. The Liebowitz Social Anxiety Scale for Children and Adolescents (LSAS-CA) applied by raters masked to the treatment condition was used as the primary outcome. As secondary outcomes, rates of response and remission and the Social Phobia Anxiety Inventory (SPAI) were used. <b><i>Results:</i></b> Both treatments were superior to WL in the LSAS-CA (CBT: <i>p</i> = 0.0112, <i>d</i> = 0.61, 95% CI 0.14–1.08; PDT: <i>p</i> = 0.0261, <i>d</i> = 0.53, 95% CI 0.06–1.00). At the end of treatment, response rates were 66, 54, and 20% for CBT, PDT, and WL. The corresponding remission rates were 47, 34, and 6%, respectively. CBT and PDT were significantly superior to WL regarding remission (CBT: <i>p</i> = 0.0009, <i>h</i> = 1.0; PDT: <i>p</i> = 0.0135, <i>h</i> = 0.74), response (CBT: <i>p</i> = 0.0004, <i>h</i> = 0.97; PDT: <i>p</i> = 0.0056, <i>h</i> = 0.72), and the SPAI (CBT: <i>p</i> = 0.0021, <i>d</i> = 0.75, 95% CI 0.27–1.22; PDT: <i>p</i> = 0.0060, <i>d</i> = 0.66, 95% CI 0.19–1.13). Treatment effects were stable at 6- and 12-month follow-ups. <b><i>Conclusions:</i></b> These results are comparable to the large SOPHO-NET trial in adults (<i>n</i> = 495). Early treatments for social anxiety are needed in order to prevent chronic manifestation of SAD.
DOI: 10.6084/m9.figshare.24151494.v1
title: Supplementary Material for: Spatial transcriptomics of aging rat ovaries reveals unexplored cell subpopulations with reduced antioxidative defence

description: Introduction: Ovarian aging is characterized by a gradual decline in quantity and quality of oocytes, and lower chance of fertility. Better understanding the genetic modulation during ovarian aging can further address available treatment options for aging-related ovarian diseases and fertility preservation. Methods: A novel technique spatial transcriptomics (ST) was used to investigate the spatial transcriptome features of rat ovaries. Transcriptomes from ST spots in the young and aged ovaries were clustered using differentially expressed genes. These data were analyzed to determine the spatial organization of age-induced heterogeneity and potential mechanisms underlying ovarian aging. Results: In this study, ST technology was applied to profile the comprehensive spatial imaging in young and aged rat ovary. Fifteen ovarian cell clusters with distinct gene-expression signatures were identified. The gene expression dynamics of granulosa cell clusters revealed three sub-types with sequential developmental stages. Aged ovary showed a significant decrease in the number of granulosa cells from antral follicle. Besides, a remarkable rearrangement of interstitial gland cells was detected in aging ovary. Further analysis of aging-associated transcriptional changes revealed that the disturbance of oxidative pathway was a crucial factor in ovarian aging. Conclusions: This study firstly described an aging-related spatial transcriptome changes in ovary, and identified the potential targets for prevention of ovarian aging. These data may provide the basis for further investigations of the diagnosis and treatment of aging-related ovarian disorders.
DOI: 10.17632/fv7tprb24j
title: Public interest on alternative medicine during pandemic in Indonesia

description: Dataset for study of public interest on alternative medicine during pandemic Indonesia by using Google trend
DOI: 10.6084/m9.figshare.14471754.v1
title: scQuint data objects - Mouse primary motor cortex (BICCN)

description: Data objects processed by scQuint.
DOI: 10.6084/m9.figshare.18910619.v3
title: Data for the responses of soil carbon and microbial community in forests

description: Global changes can alter plant inputs from both above- and below-ground, which thus may differently affect soil carbon and microbial communities. However, the general patterns of how detritus input changes affect them in forests remain unclear. By conducting a meta-analysis of 3193 observations from 165 experiments worldwide, we found that alterations in aboveground litter and/or root inputs had profound effects on soil carbon and microbial communities in forest ecosystems. Litter addition stimulated soil organic carbon (SOC) pools and microbial biomass, while removal of litter, root or both (no inputs) decreased them. The increased SOC under litter addition suggested that aboveground litter inputs benefit SOC sequestration despite accelerated decomposition. Unlike root removal, litter alterations and no inputs altered particulate organic carbon, while all detrital treatments had minor effects on mineral-associated organic carbon. In addition, detrital treatments contrastingly altered soil microbial community, with litter addition or removal shifting it towards fungi, while root removal shifting it towards bacteria. Furthermore, the responses of soil C and microbial biomass to litter alterations positively correlated with litter input rate and total litter input, suggesting that litter input quantity is a critical controller of belowground processes. Taken together, these findings provide critical insights into understanding how altered plant productivity and allocation affects soil carbon cycling, microbial communities and functioning of forest ecosystems under global changes. Future studies can take full advantage of the existing plant detritus experiments, and should focus on the relative roles of litter and roots in forming SOC and its fractions.
DOI: 10.6084/m9.figshare.21360108.v1
title: Distinct evolutionary trajectories in the Escherichia coli pangenome occur within sequence types

description: Supplementary Material for '<strong>Distinct evolutionary trajectories in the</strong> <em><strong>Escherichia coli</strong></em> <strong>pangenome occur within sequence types</strong>' as published in Microbial Genomics. <br> pangenome_data.zip contains (for each ST): <strong>ST_updated_download.txt</strong> - the download list from Enterobase including accession numbers, Bio Project IDs and sample IDs. <strong>ST_gene_presence_absence_roary.csv</strong> - gene presence/absence matrix output by Panaroo <strong>ST_pan_genome_reference.fa</strong> - linear reference genome output by Panaroo
DOI: 10.6084/m9.figshare.25511377.v2
title: Dataset for Axial Flux Evolution of Small-Scale Magnetic Flux Ropes from 0.06 au to 10 au

description: Dataset for paper "Dataset for Axial Flux Evolution of Small-Scale Magnetic Flux Ropes from 0.06 au to 10 au" submitted to The Astrophysical Journal Letters journal. Code to reproduce results is also included.
DOI: 10.6084/m9.figshare.7273946.v1
title: Structural Health Monitoring of Sandwich Structures Based on Dynamic Analysis

description: Abstract This work aims to contribute to the development of SHM systems based on vibration methods to be applied on sandwich structures. The main objective is focused on experimental damage identification via changes in the Frequency Response Function (FRF) with the usage of damage metrics. Specimens of sandwich structures made from skins of epoxy resin reinforced by glass fiber and a core of PVC foam are manufactured. First, preliminary non-damped Finite Element (FE) models are performed, and results obtained are used to define the frequency range of interest for the experimental procedure. After that, vibration experimental analyses are carried out on undamaged specimens. The natural frequencies are compared to the preliminary FE results. Second, experimental analyses are performed on damaged specimens with and without piezoelectric sensors. Then, damage metric values are calculated based on FRFs for damaged and undamaged structures, which were obtained from experimental and FE analyses (with damping effects). In addition, a new procedure is proposed to improve the quality of results provided by the damage metric. It is shown that the new procedure is very effective to identify the damage using both amplitude and phase from FRFs. Lastly, it is discussed the potential and limitations of the FE model to predict damage metric values, comparing to experimental data.
DOI: 10.3535/pyn-7ja-jnz
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tql-8ag-y3b
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jyd-6r2-naf
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mfw-gnk-2h9
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2dz-j2h-hxk
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j7s-gyg-l8r
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jff-tj1-5cs
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kv8-b9c-bep
title: Idmonea Lamouroux, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pzt-9l5-48f
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1qm-sjv-y1k
title: †Derbyia Waagen, 1884

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ezx-tm8-3tb
title: †Heterocoenia Milne Edwards & Haime, 1848

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yp1-myq-yh4
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8ry-7ql-3sk
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/228-hw7-2j9
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v7p-p7d-bww
title: Ophiuroidea Gray, 1840

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9p7-s1p-sdz
title: Balaenoptera borealis Lesson, 1828

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v90-4nx-49z
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rtp-tep-3m9
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n26-zke-cw8
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q5h-xm7-m94
title: †Rhynchonella Fischer de Waldheim, 1809

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3ll-yg3-gls
title: †Productus Sowerby, 1814

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jyj-1hm-1k4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k1y-eep-59f
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/94z-44z-gwf
title: †Moltkia Steenstrup, 1847

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lem-55n-rdt
title: Equus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j8t-6wf-lgk
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xjs-ac6-l0h
title: Rumphia Desor, 1857

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/blm-fwq-hfd
title: †Favites borneensis (Gerth, 1923)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rwl-m76-544
title: †Favorites Tschigova, 1977

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/clt-dn3-2fs
title: †Escharifora papyracea (von Hagenow, 1851)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/89n-gcc-vb9
title: †Brachyspirifer Wedekind, 1926

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yyc-e2f-6s5
title: †Turbinolia sulcata Lamarck, 1816

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z1j-a2n-ydt
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2r3-jss-5cv
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mfm-qy1-p3f
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0pq-sk7-vla
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lfm-78f-sv0
title: Sus scrofa Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0sn-hxy-vm5
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bxw-w9g-js9
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pvy-dvk-lxs
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/px8-mvp-r4s
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25625/wuw9ru
title: The semantics of plural morphology in Akan

description: R scripts for the two experiments conducted for the project titled The semantics of plural morphology in Akan
DOI: 10.25625/wuw9ru/55iibg
title: readme.txt

description: readme file for the data set
DOI: 10.25625/wuw9ru/9xzaxy
title: ex1.tab

description: Anonymized data set: Experiment 1
DOI: 10.25625/wuw9ru/n5ifgg
title: RscriptEx2.Rmd

description: Script: Experiment 2
DOI: 10.25625/wuw9ru/plpnmr
title: RscriptEx1.Rmd

description: Script: Experiment 1
DOI: 10.25625/wuw9ru/ptu3zn
title: ex2.tab

description: Anonymized data set: Experiment 2
DOI: 10.25625/2vnjkv/d0mayy
title: Figure2.m

description: :unav
DOI: 10.25625/2vnjkv/jtjzsu
title: data_Figure2.mat

description: :unav
DOI: 10.25625/2vnjkv/p6h4gv
title: data_Figure6.mat

description: :unav
DOI: 10.25625/2vnjkv/7c4euz
title: data_Figure3.mat

description: :unav
DOI: 10.25625/2vnjkv/82gyoc
title: data_Figure5.mat

description: :unav
DOI: 10.25625/2vnjkv/cqjl2k
title: Figure3.m

description: :unav
DOI: 10.25625/2vnjkv/enkesx
title: Figure6.m

description: :unav
DOI: 10.25625/2vnjkv/q2jk1u
title: Figure5.m

description: :unav
DOI: 10.25625/2vnjkv/qxhbf0
title: Figure4.m

description: :unav
DOI: 10.25625/2vnjkv/ry5fwc
title: data_Figure4.mat

description: :unav
DOI: 10.25625/2vnjkv/x20qz9
title: readme.txt

description: :unav
DOI: 10.25625/2vnjkv/z1fzti
title: gramm_3.0.0.zip

description: :unav