cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3520859
title: Appendix A. Additional survival and occurrence modeling results and individual resource selection functions and survival probability functions mapped on the landscape.

description: Additional survival and occurrence modeling results and individual resource selection functions and survival probability functions mapped on the landscape.
DOI: 10.6084/m9.figshare.3520859.v1
title: Appendix A. Additional survival and occurrence modeling results and individual resource selection functions and survival probability functions mapped on the landscape.

description: Additional survival and occurrence modeling results and individual resource selection functions and survival probability functions mapped on the landscape.
DOI: 10.6084/m9.figshare.3520856
title: Appendix A. Comparison of observation models used in the Gompertz state-space model with extractions.

description: Comparison of observation models used in the Gompertz state-space model with extractions.
DOI: 10.6084/m9.figshare.3520856.v1
title: Appendix A. Comparison of observation models used in the Gompertz state-space model with extractions.

description: Comparison of observation models used in the Gompertz state-space model with extractions.
DOI: 10.6084/m9.figshare.3520853
title: Appendix B. Posterior Bayesian model weights for temperature and precipitation covariates.

description: Posterior Bayesian model weights for temperature and precipitation covariates.
DOI: 10.6084/m9.figshare.3520853.v1
title: Appendix B. Posterior Bayesian model weights for temperature and precipitation covariates.

description: Posterior Bayesian model weights for temperature and precipitation covariates.
DOI: 10.6084/m9.figshare.3520850
title: Appendix C. Comparison of posterior and prior probability densities for parameters in the top process model.

description: Comparison of posterior and prior probability densities for parameters in the top process model.
DOI: 10.6084/m9.figshare.3520847
title: Supplement 1. Annotated R2jags code for implementing Gompertz state-space models of population dynamics with known extractions.

description: File List Koons_et_al_supplement.r (MD5: 7c626ca076aa6ab70d60cc7a908ce865) DescriptionKoons_et_al_supplement.r contains in-line R code for implementing a Gompertz state-space model of population dynamics with known extractions using the R2jags package that calls JAGS (which must be installed on your computer). On line 100, additional code is provided for estimating posterior model probabilities among a small set of hypothesized models.
DOI: 10.6084/m9.figshare.3520847.v1
title: Supplement 1. Annotated R2jags code for implementing Gompertz state-space models of population dynamics with known extractions.

description: File List Koons_et_al_supplement.r (MD5: 7c626ca076aa6ab70d60cc7a908ce865) DescriptionKoons_et_al_supplement.r contains in-line R code for implementing a Gompertz state-space model of population dynamics with known extractions using the R2jags package that calls JAGS (which must be installed on your computer). On line 100, additional code is provided for estimating posterior model probabilities among a small set of hypothesized models.
DOI: 10.6084/m9.figshare.3520844
title: Appendix A. Model and predictor variable descriptions.

description: Model and predictor variable descriptions.
DOI: 10.6084/m9.figshare.3520841
title: Complete_Dataset.xlsx

description: This is the complete dataset used for the paper "The use of disposable skin staples for intestinal resection and anastomosis in 63 dogs: (2000-2014)." Additionally this data reports a further description of the patient population along with additional treatments the patients may have received that were not presented in the original paper. <br><b>Methods </b>- Retrospective evaluation of medical records of dogs that underwent intestinal resection and anastomosis using disposable skin staples between 2000 and 2014. Data regarding patient signalment, indication for surgery, location of the resection and anastomosis, number of procedures performed, evidence of peritonitis at the time of surgery, surgeon qualifications, dehiscence, and mortality were obtained from the medical records. Mortality was defined as failure to survive beyond 10 days following resection and anastomosis.<b></b>
DOI: 10.6084/m9.figshare.3520841.v1
title: Complete_Dataset.xlsx

description: This is the complete dataset used for the paper "The use of disposable skin staples for intestinal resection and anastomosis in 63 dogs: (2000-2014)." Additionally this data reports a further description of the patient population along with additional treatments the patients may have received that were not presented in the original paper. <br><b>Methods </b>- Retrospective evaluation of medical records of dogs that underwent intestinal resection and anastomosis using disposable skin staples between 2000 and 2014. Data regarding patient signalment, indication for surgery, location of the resection and anastomosis, number of procedures performed, evidence of peritonitis at the time of surgery, surgeon qualifications, dehiscence, and mortality were obtained from the medical records. Mortality was defined as failure to survive beyond 10 days following resection and anastomosis.<b></b>
DOI: 10.6084/m9.figshare.3520838
title: Appendix A. Tables containing (1) cost values used to develop resistance surfaces, (2) additional results from microclimatic exposure experiments, and (3) statistical results of choice experiments. Figures showing (1) travel times from substrate resistance experiments with naïve observers, (2) the relationship between percentage overlap of species corridors and forest cover, and (3) representations of the three connectivity models.

description: Tables containing (1) cost values used to develop resistance surfaces, (2) additional results from microclimatic exposure experiments, and (3) statistical results of choice experiments. Figures showing (1) travel times from substrate resistance experiments with naïve observers, (2) the relationship between percentage overlap of species corridors and forest cover, and (3) representations of the three connectivity models.
DOI: 10.6084/m9.figshare.3520835
title: Appendix A. Range of environmental variables used in the analysis.

description: Range of environmental variables used in the analysis.
DOI: 10.6084/m9.figshare.3520835.v1
title: Appendix A. Range of environmental variables used in the analysis.

description: Range of environmental variables used in the analysis.
DOI: 10.6084/m9.figshare.3520832
title: Appendix B. Dispersal parameters of the stationary (σstat) and the mobile component (σmob) for 17 modeled fish species and graphical description of the fish dispersal model FIDIMO.

description: Dispersal parameters of the stationary (σstat) and the mobile component (σmob) for 17 modeled fish species and graphical description of the fish dispersal model FIDIMO.
DOI: 10.6084/m9.figshare.3520832.v1
title: Appendix B. Dispersal parameters of the stationary (σstat) and the mobile component (σmob) for 17 modeled fish species and graphical description of the fish dispersal model FIDIMO.

description: Dispersal parameters of the stationary (σstat) and the mobile component (σmob) for 17 modeled fish species and graphical description of the fish dispersal model FIDIMO.
DOI: 10.6084/m9.figshare.3520829
title: Appendix C. Details on species-specific random effects of habitat suitability (HS), dispersal probability (DI), and barrier effects (BE).

description: Details on species-specific random effects of habitat suitability (HS), dispersal probability (DI), and barrier effects (BE).
DOI: 10.6084/m9.figshare.3520829.v1
title: Appendix C. Details on species-specific random effects of habitat suitability (HS), dispersal probability (DI), and barrier effects (BE).

description: Details on species-specific random effects of habitat suitability (HS), dispersal probability (DI), and barrier effects (BE).
DOI: 10.6084/m9.figshare.3520826
title: Supplement 1. GRASS-Python script to run FIDIMO for several species; derived data set and corresponding R code to calculate GLMMs and create interaction plots.

description: File List 01_GRASS_FIDIMO_analysis.py (MD5: 9beacd30eddc5c18906c26337a69ee0e) 02_habitat_dispersal_barriers_raw_data.csv (MD5: 6b9d8d5a7724f4dcea462279bfda36c3) 03_GLMM_habitat_dispersal_barriers.R (MD5: cbbde806275b0ae2b39c4843aa117253) 04_Plots_GLMM_interactions.R (MD5: 4da402149c5a3473b4295b574f021da9) Description <b>01_GRASS_FIDIMO_analysis.py</b><b> –</b> Commented Python code to run the dispersal model FIDIMO within a GRASS session. The script provides a FIDIMO calculation in loops for (i) 17 species, (ii) nine time intervals (1-9 years) and (iii) inclusive/exclusive barriers. The species-specific parameters for the model internal calculation of the dispersal distances are included in the script. Species' presence points (site name, catch per unit effort, site ID, X, Y) are used as FIDIMO input file (ascii point file). <b>02_habitat_dispersal_barriers_raw_data.csv</b> – Derived data set including all information used for running the generalized linear mixed models (GLMM). Columns are as follows: row number (numeric; 1:20672)<br> <i>SiteID</i> Site specific ID (numeric)<br> <i>species</i> Species Code (character, species code)<br> <i>presabs</i> Presence of a species (0: Absence, 1: Presence)<br> <i>L</i> Species-specific common length [mm] (numeric) <br> <i>AR </i> Aspect ratio of the caudal fin [-] (numeric)<br> <i>variable</i> Variable name (MaxEnt output, Disperal probability, Barrier effects), e.g. "point_fidimo_corrected_9y" (character)<br> value value of the corresponding variable <b>03_GLMM_habitat_dispersal_barriers.R </b>– R code for running generalized linear mixed models using 02_habitat_dispersal_barriers_raw_data.csv as input data set. <b>04_Plots_GLMM_interactions.R</b> – R code for plotting interaction effects of the output of the GLMM.
DOI: 10.6084/m9.figshare.3520823
title: Appendix A. Wetlands used as experimental units at the MacArthur Agro-ecology Research Center (MAERC).

description: Wetlands used as experimental units at the MacArthur Agro-ecology Research Center (MAERC).
DOI: 10.6084/m9.figshare.3520823.v1
title: Appendix A. Wetlands used as experimental units at the MacArthur Agro-ecology Research Center (MAERC).

description: Wetlands used as experimental units at the MacArthur Agro-ecology Research Center (MAERC).
DOI: 10.6084/m9.figshare.3520820
title: Appendix B. Genbank accession numbers for the adephagan phylogeny.

description: Genbank accession numbers for the adephagan phylogeny.
DOI: 10.6084/m9.figshare.3520820.v1
title: Appendix B. Genbank accession numbers for the adephagan phylogeny.

description: Genbank accession numbers for the adephagan phylogeny.
DOI: 10.6084/m9.figshare.3520817
title: Appendix A. Study area, study design and sample sizes used in this study.

description: Study area, study design and sample sizes used in this study.
DOI: 10.6084/m9.figshare.3520817.v1
title: Appendix A. Study area, study design and sample sizes used in this study.

description: Study area, study design and sample sizes used in this study.
DOI: 10.6084/m9.figshare.3520814
title: Appendix B. The number data samples for pollen and nectar.

description: The number data samples for pollen and nectar.
DOI: 10.6084/m9.figshare.3520814.v1
title: Appendix B. The number data samples for pollen and nectar.

description: The number data samples for pollen and nectar.
DOI: 10.6084/m9.figshare.3520811
title: Appendix C. List of plant species collected for (i) pollen and (ii) nectar, species affiliation within resource types and mass proportion (%), ranked the most to the least annually collected by resource type.

description: List of plant species collected for (i) pollen and (ii) nectar, species affiliation within resource types and mass proportion (%), ranked the most to the least annually collected by resource type.
DOI: 10.6084/m9.figshare.3520808
title: Appendix D. Annual phenological deviation estimated by cumulative temperature sum from a national French meteorological station (http://climat.meteofrance.com/) located in Niort, on the northern edge of the study area.

description: Annual phenological deviation estimated by cumulative temperature sum from a national French meteorological station (http://climat.meteofrance.com/) located in Niort, on the northern edge of the study area.
DOI: 10.6084/m9.figshare.3520808.v1
title: Appendix D. Annual phenological deviation estimated by cumulative temperature sum from a national French meteorological station (http://climat.meteofrance.com/) located in Niort, on the northern edge of the study area.

description: Annual phenological deviation estimated by cumulative temperature sum from a national French meteorological station (http://climat.meteofrance.com/) located in Niort, on the northern edge of the study area.
DOI: 10.6084/m9.figshare.3520805
title: Appendix E. Nutritional value of analysed pollen.

description: Nutritional value of analysed pollen.
DOI: 10.6084/m9.figshare.3520805.v1
title: Appendix E. Nutritional value of analysed pollen.

description: Nutritional value of analysed pollen.
DOI: 10.6084/m9.figshare.3520802
title: Appendix F. Seasonal patterns of (a) total brood area and (b) colony size of honey bee colonies from the same study area (redrawn from Odoux et al. (2014) with one year update (2008 to 2012).

description: Seasonal patterns of (a) total brood area and (b) colony size of honey bee colonies from the same study area (redrawn from Odoux et al. (2014) with one year update (2008 to 2012).
DOI: 10.6084/m9.figshare.3520802.v1
title: Appendix F. Seasonal patterns of (a) total brood area and (b) colony size of honey bee colonies from the same study area (redrawn from Odoux et al. (2014) with one year update (2008 to 2012).

description: Seasonal patterns of (a) total brood area and (b) colony size of honey bee colonies from the same study area (redrawn from Odoux et al. (2014) with one year update (2008 to 2012).
DOI: 10.6084/m9.figshare.3520799
title: Appendix A. Supplementary information on field study site and experimental design; statistic analysis on soil chemistry, microbial biomass, and enzyme activity in response to P application treatments, block and their interactions; hierarchical cluster analysis of the bacterial distribution of the 150 most abundant families in soil samples among the four treatments.

description: Supplementary information on field study site and experimental design; statistic analysis on soil chemistry, microbial biomass, and enzyme activity in response to P application treatments, block and their interactions; hierarchical cluster analysis of the bacterial distribution of the 150 most abundant families in soil samples among the four treatments.
DOI: 10.6084/m9.figshare.3520799.v1
title: Appendix A. Supplementary information on field study site and experimental design; statistic analysis on soil chemistry, microbial biomass, and enzyme activity in response to P application treatments, block and their interactions; hierarchical cluster analysis of the bacterial distribution of the 150 most abundant families in soil samples among the four treatments.

description: Supplementary information on field study site and experimental design; statistic analysis on soil chemistry, microbial biomass, and enzyme activity in response to P application treatments, block and their interactions; hierarchical cluster analysis of the bacterial distribution of the 150 most abundant families in soil samples among the four treatments.
DOI: 10.6084/m9.figshare.3520796
title: Appendix A. Saturation responses of leaf litter breakdown rates (k d-1) vs. soluble reactive phosphorus and dissolved inorganic nitrogen.

description: Saturation responses of leaf litter breakdown rates (k d-1) vs. soluble reactive phosphorus and dissolved inorganic nitrogen.
DOI: 10.6084/m9.figshare.3520793
title: Appendix B. Fungal biomass and microbial respiration data associated with incubated leaf litter.

description: Fungal biomass and microbial respiration data associated with incubated leaf litter.
DOI: 10.6084/m9.figshare.3520796.v1
title: Appendix A. Saturation responses of leaf litter breakdown rates (k d-1) vs. soluble reactive phosphorus and dissolved inorganic nitrogen.

description: Saturation responses of leaf litter breakdown rates (k d-1) vs. soluble reactive phosphorus and dissolved inorganic nitrogen.
DOI: 10.6084/m9.figshare.3520793.v1
title: Appendix B. Fungal biomass and microbial respiration data associated with incubated leaf litter.

description: Fungal biomass and microbial respiration data associated with incubated leaf litter.
DOI: 10.6084/m9.figshare.3520790
title: Appendix C. Plots of residuals of leaf litter breakdown rates (k dd-1) versus dissolved inorganic nitrogen (DIN) against soluble reactive phosphorus (SRP), and k dd-1 vs. SRP against DIN.

description: Plots of residuals of leaf litter breakdown rates (k dd-1) versus dissolved inorganic nitrogen (DIN) against soluble reactive phosphorus (SRP), and k dd-1 vs. SRP against DIN.
DOI: 10.6084/m9.figshare.3520790.v1
title: Appendix C. Plots of residuals of leaf litter breakdown rates (k dd-1) versus dissolved inorganic nitrogen (DIN) against soluble reactive phosphorus (SRP), and k dd-1 vs. SRP against DIN.

description: Plots of residuals of leaf litter breakdown rates (k dd-1) versus dissolved inorganic nitrogen (DIN) against soluble reactive phosphorus (SRP), and k dd-1 vs. SRP against DIN.
DOI: 10.6084/m9.figshare.3520784
title: Appendix A. Solutions for NMS ordination of species composition in most recent census of permanent plots at Dukes RNA and Huron Mountains.

description: Solutions for NMS ordination of species composition in most recent census of permanent plots at Dukes RNA and Huron Mountains.
DOI: 10.6084/m9.figshare.3520784.v1
title: Appendix A. Solutions for NMS ordination of species composition in most recent census of permanent plots at Dukes RNA and Huron Mountains.

description: Solutions for NMS ordination of species composition in most recent census of permanent plots at Dukes RNA and Huron Mountains.
DOI: 10.6084/m9.figshare.3520781
title: Appendix B. Solutions for PCA ordination of soil characteristics in permanent plots at Dukes RNA and Huron Mountains.

description: Solutions for PCA ordination of soil characteristics in permanent plots at Dukes RNA and Huron Mountains.
DOI: 10.6084/m9.figshare.3520781.v1
title: Appendix B. Solutions for PCA ordination of soil characteristics in permanent plots at Dukes RNA and Huron Mountains.

description: Solutions for PCA ordination of soil characteristics in permanent plots at Dukes RNA and Huron Mountains.
DOI: 10.6084/m9.figshare.3520778
title: Appendix C. Solutions for NMS ordination of disturbance history (temporal patterns in basal area and mortality) in permanent plots at Dukes RNA and Huron Mountains.

description: Solutions for NMS ordination of disturbance history (temporal patterns in basal area and mortality) in permanent plots at Dukes RNA and Huron Mountains.
DOI: 10.6084/m9.figshare.3520778.v1
title: Appendix C. Solutions for NMS ordination of disturbance history (temporal patterns in basal area and mortality) in permanent plots at Dukes RNA and Huron Mountains.

description: Solutions for NMS ordination of disturbance history (temporal patterns in basal area and mortality) in permanent plots at Dukes RNA and Huron Mountains.
DOI: 10.6084/m9.figshare.3520775
title: Appendix D. Comparison of productivity between sampling periods at the Dukes RNA site.

description: Comparison of productivity between sampling periods at the Dukes RNA site.
DOI: 10.6084/m9.figshare.3520775.v1
title: Appendix D. Comparison of productivity between sampling periods at the Dukes RNA site.

description: Comparison of productivity between sampling periods at the Dukes RNA site.
DOI: 10.6084/m9.figshare.3520772
title: Appendix E. Comparison of stand characteristics and structural complexity metrics among species composition groups.

description: Comparison of stand characteristics and structural complexity metrics among species composition groups.
DOI: 10.6084/m9.figshare.3520772.v1
title: Appendix E. Comparison of stand characteristics and structural complexity metrics among species composition groups.

description: Comparison of stand characteristics and structural complexity metrics among species composition groups.
DOI: 10.6084/m9.figshare.3520769
title: Appendix F. Full model lists from multiple regression analysis of predictors of rugosity and productivity.

description: Full model lists from multiple regression analysis of predictors of rugosity and productivity.
DOI: 10.6084/m9.figshare.3520769.v1
title: Appendix F. Full model lists from multiple regression analysis of predictors of rugosity and productivity.

description: Full model lists from multiple regression analysis of predictors of rugosity and productivity.
DOI: 10.6084/m9.figshare.3520766
title: Appendix G. Relationships between productivity and PCL-derived canopy height and complexity metrics.

description: Relationships between productivity and PCL-derived canopy height and complexity metrics.
DOI: 10.6084/m9.figshare.3520766.v1
title: Appendix G. Relationships between productivity and PCL-derived canopy height and complexity metrics.

description: Relationships between productivity and PCL-derived canopy height and complexity metrics.
DOI: 10.6084/m9.figshare.3520763
title: Appendix H. Relationship between productivity and growth dominance by storm severity group.

description: Relationship between productivity and growth dominance by storm severity group.
DOI: 10.6084/m9.figshare.3520763.v1
title: Appendix H. Relationship between productivity and growth dominance by storm severity group.

description: Relationship between productivity and growth dominance by storm severity group.
DOI: 10.6084/m9.figshare.3520760
title: Appendix A. Additional figures on cokriging results: empirical and fitted variograms, histogram of all the standard errors of the cokriged estimates of the tuna presence, and values of index of presence for two coefficients of intensive search (IS) parameter.

description: Additional figures on cokriging results: empirical and fitted variograms, histogram of all the standard errors of the cokriged estimates of the tuna presence, and values of index of presence for two coefficients of intensive search (IS) parameter.
DOI: 10.6084/m9.figshare.3520760.v1
title: Appendix A. Additional figures on cokriging results: empirical and fitted variograms, histogram of all the standard errors of the cokriged estimates of the tuna presence, and values of index of presence for two coefficients of intensive search (IS) parameter.

description: Additional figures on cokriging results: empirical and fitted variograms, histogram of all the standard errors of the cokriged estimates of the tuna presence, and values of index of presence for two coefficients of intensive search (IS) parameter.
DOI: 10.6084/m9.figshare.3520757
title: Appendix A. Studies included in the meta-analysis and associated country, species, effect sizes, adjusted sample sizes, and study design categories.

description: Studies included in the meta-analysis and associated country, species, effect sizes, adjusted sample sizes, and study design categories.
DOI: 10.6084/m9.figshare.3520757.v1
title: Appendix A. Studies included in the meta-analysis and associated country, species, effect sizes, adjusted sample sizes, and study design categories.

description: Studies included in the meta-analysis and associated country, species, effect sizes, adjusted sample sizes, and study design categories.
DOI: 10.6084/m9.figshare.3520754
title: Appendix B. Figures showing the distribution of correlations between wetland amount and forest amount from each study included in the meta-analysis across and within taxonomic groups.

description: Figures showing the distribution of correlations between wetland amount and forest amount from each study included in the meta-analysis across and within taxonomic groups.