cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.5d84mz
title: Occurrence Download

description: A dataset containing 836 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Neoctantes niger (Pelzeln, 1859)"
 ]
}

 The dataset includes 836 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053627-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.444c46
title: Occurrence Download

description: A dataset containing 1968429134 species occurrences available in GBIF matching the query:
{ }

 The dataset includes 1968429134 records from 43121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0165694-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/5b3wk93bm2.1
title: Air Masses and Electricity Demand in New England

description: These datasets (.mat) and Matlab code (.m) are being made available in tandem with research entitled: 
Exploring the efficacy of multivariate air masses as a predictor of electricity demand: A case study in New England

Cameron C. Lee (Kent State University; ClimRISE Laboratory; cclee@kent.edu)
Erik Tyler Smith (EPRI)

Email the lead-author (Cameron Lee) with Questions.

You will need the following products from Mathworks (along with custom functions included on this page):
'MATLAB' '9.8'
'Mapping Toolbox' '4.10'
'Statistics and Machine Learning Toolbox' '11.7'

To use:
1) download all .mat files to a common folder
2) open the GWTC_NE_Energy_ForMendeley.m script in Matlab, adjust any folder names to the common folder from step 1 above
3) run the script
DOI: 10.15468/dl.mva8tr
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centaurea solstitialis L.",
 "Country is Lebanon"
 ]
}

 The dataset includes 11 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007546-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/9tb668v8r6.1
title: From Initial Formation to Developmental Refinement: GABAergic Inputs Shape Neuronal Subnetworks in the Primary Somatosensory Cortex

description: The calcium imaging data were obtained through two-photon awake imaging of the somatosensory cortex in developing mice from P11 to P21. Simultaneously, behavioral video recordings were collected from the experimental setup. The two modalities were synchronized using an LED signal at the start and end of the two-photon imaging experiment. Imaging data analysis was performed using Python or MATLAB, utilizing standard toolboxes, open-access toolboxes, and custom-written code.
DOI: 10.17632/xdc29f7k44
title: Conmebol

description: Conmebol concussion data 2022-2024
DOI: 10.17632/xdc29f7k44.1
title: Conmebol

description: Conmebol concussion data 2022-2024
DOI: 10.15468/dl.gwjwkn
title: Occurrence Download

description: A dataset containing 173038 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "Geometry POLYGON((3.55711 50.41366,4.1975 49.95242,5.22231 50.12172,4.39239 50.99218,3.55711 50.41366))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (April, May, June)",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 2000-2015"
 ]
}

 The dataset includes 173038 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011868-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gzkudm
title: Occurrence Download

description: A dataset containing 376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Suaeda glauca (Bunge) Bunge"
 ]
}

 The dataset includes 376 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001619-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kjw2yv
title: Occurrence Download

description: A dataset containing 120316 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "OccurrenceStatus is Present",
 "TaxonKey is Ficaria verna Huds."
 ]
}

 The dataset includes 120316 records from 173 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005354-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tfuhd9
title: Occurrence Download

description: A dataset containing 85030 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Salix phylicifolia"
 ]
}

 The dataset includes 85030 records from 204 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083270-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rfchqu
title: Occurrence Download

description: A dataset containing 938 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Automolus paraensis)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 938 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083345-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v2mx53
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leonotis nepetifolia",
 "Country is Tonga",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083347-250717081556266/datasets/export for details.
DOI: 10.15468/dl.z6du76
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Nyctomys sumichrasti)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083348-250717081556266/datasets/export for details.
DOI: 10.15468/dl.ncxavx
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nicotiana glauca",
 "Country is Türkiye",
 "HasCoordinate is true"
 ]
}

 The dataset includes 107 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083346-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mpztaj
title: Occurrence Download

description: A dataset containing 145551 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eriophorum vaginatum L.",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 145551 records from 441 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020210-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/krv324
title: Replication Data for: Explainable AI-based Risk Assessment for Pluvial Floods over South Korea

description: Lee, E, Y.-W. Young, Y.-H. Jung, and J. Kam, 2025, Explainable AI-based Risk Assessment of Pluvial Floods over South Korea, J. Environ. Manag., 385, 125640. https://doi.org/10.1016/j.jenvman.2025.125640
DOI: 10.6084/m9.figshare.28950818
title: Databases for MGlinux.v18.3

description: Compressed databases needed for the virtual machine MGlinux v18.3; files included:focus_dbs.tar.gz &lt;- focus taxonomic classificationmg_dbs.v3.tar.gz &lt;- mg_classifier databasesscg.tar.gz &lt;- anvio SCG taxonomic classification, diamond databases
DOI: 10.5281/zenodo.15188298
title: Supplemental data

description: Supplemental file (.xls). Numeric dataset for all figures. 

Supplemental figure 1 (.pdf). Representative micrographs of rat (A) and human (B) enteric glia cultures considered as pure after immunocytochemistry (more than 90% S100β-positive cells). Cells were stained using anti S100b (green) aSMA (magenta) and antibodies. Dapi staining (blue) is shown. Scale bar, A-B, 100 mm.

Supplemental figure 2 (.eps). Gating strategy for determination of live CD8 T cells. The gating strategy to first eliminate debris is shown on a representative plot SSC-A vs FSC-A. Then, single cells are identified by plotting FSC-H against FSC-A. Singlet proportion is usually in the 95-100% range. CD3 positive cells were selected by gating high B530 laser parameter. Then, positive CD8 from CD3 positive cells were selected by gating high YG780 laser parameter. Finally, live CD4 positive cells were counted by gating low V450 laser parameter.

Supplemental figure 3 (.eps). Micrographs of adhesion of human CD4 and CD8 T cells derived from peripheral blood mononuclear cells on enteric glia. Enteric glia was pretreated 24 hours with IL-1b and TNFa (B-E) or not (A). D and E represent a high magnification of CD4 and CD8 cells and glial cells corresponding to the condition in which enteric glia was treated with IL-1b and TNFa and solvent. Cells were stained using anti CD4 (white) and or CD8 (magenta) and S100b (green) antibodies. In some panel, Dapi staining (blue) is shown. Scale bar, A-C, 60 mm; D-E, 12 mm.” White and yellow arrowheads point out CD4 and CD8 T cells, respectively. For more clarity, all cells are not pointed out on the figure.
DOI: 10.5281/zenodo.15188299
title: Data set
DOI: 10.5281/zenodo.15356049
title: Supplemental data

description: Supplemental file (.xls). Numeric dataset for all figures. 

Supplemental figure 1 (.pdf). Representative micrographs of rat (A) and human (B) enteric glia cultures considered as pure after immunocytochemistry (more than 90% S100β-positive cells). Cells were stained using anti S100b (green) aSMA (magenta) and antibodies. Dapi staining (blue) is shown. Scale bar, A-B, 100 mm.

Supplemental figure 2 (.eps). Gating strategy for determination of live CD8 T cells. The gating strategy to first eliminate debris is shown on a representative plot SSC-A vs FSC-A. Then, single cells are identified by plotting FSC-H against FSC-A. Singlet proportion is usually in the 95-100% range. CD3 positive cells were selected by gating high B530 laser parameter. Then, positive CD8 from CD3 positive cells were selected by gating high YG780 laser parameter. Finally, live CD4 positive cells were counted by gating low V450 laser parameter.

Supplemental figure 3 (.eps). Micrographs of adhesion of human CD4 and CD8 T cells derived from peripheral blood mononuclear cells on enteric glia. Enteric glia was pretreated 24 hours with IL-1b and TNFa (B-E) or not (A). D and E represent a high magnification of CD4 and CD8 cells and glial cells corresponding to the condition in which enteric glia was treated with IL-1b and TNFa and solvent. Cells were stained using anti CD4 (white) and or CD8 (magenta) and S100b (green) antibodies. In some panel, Dapi staining (blue) is shown. Scale bar, A-C, 60 mm; D-E, 12 mm.” White and yellow arrowheads point out CD4 and CD8 T cells, respectively. For more clarity, all cells are not pointed out on the figure.
DOI: 10.15468/dl.4untch
title: Occurrence Download

description: A dataset listing the 1304 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Russian Federation",
 "DatasetKey is one of (iNaturalist Research-grade Observations, Moscow University Herbarium (MW))",
 "Geometry POLYGON((39.586 43.3496,40.13075 43.3496,40.13075 43.68181,39.586 43.68181,39.586 43.3496))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset's 1304 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020222-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00010916
title: Predictability of biomarkers and disease activity indices for efficacy of advanced therapies in Crohn’s disease

description: Inflammatory bowel disease (IBD) is a condition that causes long-term inflammation in the digestive system, also known as the gastrointestinal (GI) tract, with symptoms that may include diarrhea, abdominal pain, and rectal bleeding. This condition affects more than 6.8 million people worldwide. There are two main types of IBD: ulcerative colitis (UC) and Crohn’s disease (CD). UC causes inflammation and sores (ulcers) in the lining of the lower part of the GI tract, whereas CD can affect any part of the GI tract and multiple layers of the intestinal wall.

To monitor and evaluate the severity of CD, doctors rely on a combination of patient-reported symptoms, blood tests, and medical procedures. Based on clinical guidelines, these tools help determine how well a patient responds to treatment or whether they achieve remission (a period when symptoms improve significantly or disappear).

When researchers assess improvements in CD, they use specific measurement tools, or "indices," to track changes in patients’ conditions. These indices can focus on clinical symptoms (such as pain or diarrhea), endoscopic results (where a small camera has been used to view the GI tract) or blood tests. However, there is no clear agreement on the best way to measure these improvements, which creates challenges in determining whether new treatments are effective. For example, there is debate about which thresholds of improvement in these indices indicate meaningful changes for patients. Additionally, some methods may not be sensitive enough to capture improvements in patients with milder symptoms.

Our research aims to address these challenges by studying the strengths and limitations of the available indices used to measure treatment response in CD. We will also explore how well these indices capture improvements in patients with varying levels of disease severity. This research is important because clearer and more standardized measures of improvement can help ensure that new treatments for CD are accurately evaluated and compared. Ultimately, this could lead to better care and outcomes for people living with CD.

To conduct this research, we will review existing studies and data on CD measurement tools to analyze their effectiveness, reliability, and ability to detect clinically meaningful improvements. By identifying the most appropriate and reliable measures, we hope to contribute to more precise and patient-centered approaches to treating CD.
DOI: 10.15468/dl.t5uu9n
title: Occurrence Download

description: A dataset containing 864 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "OccurrenceStatus is Present",
 "TaxonKey is Coenagrion armatum (Charpentier, 1840)"
 ]
}

 The dataset includes 864 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020230-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28952045
title: Movie S1 <i>P. ubiquitus </i>feeding on <i>O. neolycopersici </i>on tomato

description: <i>P. ubiquitus </i>feeding on <i>O. neolycopersici </i>on tomato
DOI: 10.6084/m9.figshare.28952045.v1
title: Movie S1 <i>P. ubiquitus </i>feeding on <i>O. neolycopersici </i>on tomato

description: <i>P. ubiquitus </i>feeding on <i>O. neolycopersici </i>on tomato
DOI: 10.5281/zenodo.14885426
title: Supplemental Information for 'From Docking and Molecular Dynamics to Experimental Discovery: Exploring the Hydrophobic Landscapes of Heparanase to Design Potent Inhibitors'

description: Classical_MD_Input_Files.zip: Contains topology and starting coordinates for each docked ligand simulation tested.  Also contains input files for use with Amber20, following the order "init", "cold_equil", "heating", "hot_equil", and finally "production".  Each stage with numerical filenames follows iterative relaxation of restraints.

Classical_MD_Replicate_Analyses.zip: Contains example input file for cpptraj analysis (all simulations followed the same pattern, only the incoming topology and trajectory files differ) as well as replicate results for RMSD, RMSF, Correlated Motion, and Hydrogen Bonding, all separated by ligand.  Also includes example final frame from a representative trajectory for each ligand.

Docked_Ligand_Poses.zip:  Contains the PDB structure of each ligand docked to heparanase produced by Yasara.

Free_Ligand_Structures.zip:  Contains the PDB structure of each ligand before docking.

Ligand_Forcefield_Parameters.zip:  Contains the .mol2 and .frcmod files generated by AutoParams for each ligand simulated.  These files are necessary to regenerate the MD topology and starting coordinates provided in Classical_MD_Input_Files.zip

Heparanase_Ligands_SMILES.csv: Comma-Separated Values file containing the SMILES strings for each ligand tested.

Yasara_MD_Inputs_and_Analysis.zip: Contains Yasara inputs, md scripts, and analysis scripts for all tested ligands.
DOI: 10.5281/zenodo.14885427
title: Supplemental Information for Structure-Based Discovery of Heparanase Inhibitors from Tetrasaccharide Aminoglycosides

description: Topology, starting, and ending coordinates for docked ligand simulations with heparanase protein.  Also includes Ramachandran plots for all simulations and additional MD Analyses in PDF.
DOI: 10.5281/zenodo.15093152
title: Supplemental Information for 'From Docking and Molecular Dynamics to Experimental Discovery: Exploring the Hydrophobic Landscapes of Heparanase to Design Potent Inhibitors'

description: Classical_MD_Input_Files.zip: Contains topology and starting coordinates for each docked ligand simulation tested.  Also contains input files for use with Amber20, following the order "init", "cold_equil", "heating", "hot_equil", and finally "production".  Each stage with numerical filenames follows iterative relaxation of restraints.

Classical_MD_Replicate_Analyses.zip: Contains example input file for cpptraj analysis (all simulations followed the same pattern, only the incoming topology and trajectory files differ) as well as replicate results for RMSD, RMSF, Correlated Motion, and Hydrogen Bonding, all separated by ligand.  Also includes example final frame from a representative trajectory for each ligand.

Docked_Ligand_Poses.zip:  Contains the PDB structure of each ligand docked to heparanase produced by Yasara.

Free_Ligand_Structures.zip:  Contains the PDB structure of each ligand before docking.

Ligand_Forcefield_Parameters.zip:  Contains the .mol2 and .frcmod files generated by AutoParams for each ligand simulated.  These files are necessary to regenerate the MD topology and starting coordinates provided in Classical_MD_Input_Files.zip

Heparanase_Ligands_SMILES.csv: Comma-Separated Values file containing the SMILES strings for each ligand tested.

Yasara_MD_Inputs_and_Analysis.zip: Contains Yasara inputs, md scripts, and analysis scripts for all tested ligands.
DOI: 10.7910/dvn/iabwty
title: Replication Data for: The effect of neighbours’ arms imports on intrastate conflict severity

description: Replication data including Stata .do and .log files for PIED3769 Dissertation for Q-Steps Students
DOI: 10.15468/dl.edcx9y
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calliopsis barbata (Timberlake, 1952)"
 ]
}

 The dataset includes 74 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020231-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cama7w
title: Occurrence Download

description: A dataset containing 6913 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-70.70908 -27.1026,-68.58573 -27.1026,-68.58573 -25.99145,-70.70908 -25.99145,-70.70908 -27.1026))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 6913 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020232-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.teurkn
title: Occurrence Download

description: A dataset containing 728 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "OccurrenceStatus is Present",
 "TaxonKey is Culicoides chiopterus (Meigen, 1830)"
 ]
}

 The dataset includes 728 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020233-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28945790
title: functional_composition_repo

description: Code and data used in the research paper: <b>Disparities in functional composition shape forest vulnerability to climate change</b>
DOI: 10.6084/m9.figshare.28945790.v1
title: functional_composition_repo

description: Code and data used in the research paper: <b>Disparities in functional composition shape forest vulnerability to climate change</b>
DOI: 10.5281/zenodo.15270941
title: Partner dependency alters patterns of coevolutionary selection in mutualisms

description: Datasets associated with "Partner dependency alters patterns of coevolutionary selection in mutualisms":

diff_time-shift_fac+ob2025.csv: Time-shift assay data testing coevolution. 

eff_both_cOD.csv: Resource use efficiency data.

corrected_prod_Lys_ob+fac.csv: Overproduction of lysine data.

corrected_prod_Ade_fac+ob.csv: Overproduction of adenine data.
DOI: 10.5281/zenodo.15270942
title: Partner dependency alters patterns of coevolutionary selection in mutualisms

description: Datasets associated with "Partner dependency alters patterns of coevolutionary selection in mutualisms":

diff_time-shift_fac+ob2025.csv: Time-shift assay data testing coevolution. 

eff_both_cOD.csv: Resource use efficiency data.

corrected_prod_Lys_ob+fac.csv: Overproduction of lysine data.

corrected_prod_Ade_fac+ob.csv: Overproduction of adenine data.