cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.145mg74/1
title: Fatty acid and damage data

description: Sperm damage rates and fatty acid for greenfinches and hawfinches, including accession number at the Natural History Museum of Oslo
DOI: 10.5061/dryad.145mg74/2
title: Single cell VCL data

description: Velocity data for all single sperm cells
DOI: 10.5061/dryad.33s566q/1
title: Prey & predator of dummy, prey composision, spider defence to lizard and lizard response, and spectrum.
DOI: 10.5061/dryad.3mf353m/1
title: Pulsatilla cernua cpDNA

description: This data file includes three regions of chloroplast, trnL-trnF, trnH-psbA, and trnH-rnK of 24 individuals of Pulsatilla cernua collected in Japan, Korea, and Russia.
DOI: 10.5061/dryad.3tf4mt4/1
title: Forbes_lgherbs_allfxn_review_final

description: These data describe the functional responses of experimental large herbivore exclusion, collected from a Web Of Science search. The dataset includes functional responses on their own lines (e.g. multiple functional responses could be recorded at one site, within one publication), and includes information on: publication, exclosure experiment, and which ecosystem function was examined.
DOI: 10.5061/dryad.3tf4mt4/2
title: Forbes_lgherbs_carbondat_review_final

description: This dataset consists of carbon cycle responses to experimental large herbivore exclosure. Each line consists of a single component of the carbon cycle's response to exclosure (e.g. one study may examine multiple components of the carbon cycle), and includes data on that component before/after large herbivore exclosure, information on the experimental site, which component was being measured and how, and any metadata relevant to the response (e.g. large herbivore density) if reported.
DOI: 10.5061/dryad.4187519/1
title: Data from Damsgård et al
DOI: 10.5061/dryad.45058jq/1
title: drought_scores_raw

description: These are raw drought scores from the terminal drought experiment described in M&M section 2.3.
DOI: 10.5061/dryad.45058jq/2
title: droughtdata_main

description: This file contains the drought sensitivity metric calculated from raw drought scores as described in M&M section 2.3 (both untransformed and transformed). It also contains leaf area measurements for each individual (untransformed and transformed).
DOI: 10.5061/dryad.45058jq/3
title: leaf_traits_main

description: This file contains leaf ecophysiology traits, vegetative anthocyanin and resin in both stressed and unstressed treatments. Untransformed data are included for all variables, and transformed for those required. See M&M section 2.4.
DOI: 10.5061/dryad.45058jq/4
title: ecophys_traits_by_family

description: This file contains summarized drought, leaf area, vegetative anthocyanin and resin data, with individual replicates averaged by family. See M&M section 2.5.
DOI: 10.5061/dryad.45j0r70/1
title: WT_IgM_R1.fastq

description: Ramos (RA 1) ATCC CRL-1596 Homo sapiens Burkitt's  cell lymphoma immunoglobulin heavy chain variable sequences. RT-PCR and amplification from cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq.  This is read 1 (R1)
DOI: 10.5061/dryad.45j0r70/2
title: WT_IgM_R2.fastq

description: Ramos (RA 1) ATCC CRL-1596 Homo sapiens Burkitt's  cell lymphoma immunoglobulin heavy chain variable sequences. RT-PCR and amplification from cell mRNA performed using gene specific primers.  TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 2 (R2)
DOI: 10.5061/dryad.45j0r70/3
title: WT_LLC_R1.fastq

description: Ramos (RA 1) ATCC CRL-1596 Homo sapiens Burkitt's  cell lymphoma immunoglobulin lambda light chain variable sequences. RT-PCR and amplification from cell mRNA performed using gene specific primers.  TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 1 (R1)
DOI: 10.5061/dryad.45j0r70/4
title: WT_LLC_R2.fastq

description: Ramos (RA 1) ATCC CRL-1596 Homo sapiens Burkitt's  cell lymphoma immunoglobulin lambda light chain variable sequences. RT-PCR and amplification from cell mRNA performed using gene specific primers.  TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 2 (R2)
DOI: 10.5061/dryad.4n2fk97/1
title: SotoGomez_Dioscorea_BaitSeqs

description: Bait sequences for a Dioscorea-specific nuclear enrichment panel to target 260 low-to-single-copy nuclear genes.
DOI: 10.5061/dryad.4n2fk97/2
title: SotoGomez_AppendixS1_TargetGeneCharacterization

description: Name, length, and predicted function of the 260 low-to-single-copy nuclear genes targeted by a Dioscorea-specific target enrichment panel.
DOI: 10.5061/dryad.4n2fk97/3
title: SotoGomez_AppendixS4_GenePartitioningScheme

description: Data partitioning scheme inferred using PartitionFinder2 from 264 initial gene partitions.
DOI: 10.5061/dryad.4n2fk97/4
title: SotoGomez_AppendixS5_Coding+NonCodingSeq_Length

description: Average length of coding and non-coding sequences recovered for 25 bait-enriched Dioscoreales taxa.
DOI: 10.5061/dryad.4n2fk97/5
title: SotoGomez_AppendixS6_TargetGeneSummaryStats

description: Summary statistics for gene targets, including average alignment length, missing data and parsimony informative sites.
DOI: 10.5061/dryad.4n2fk97/6
title: SotoGomez_AppendixS7_DioscoreaKit_Angiosperm353kit_Comparison

description: Comparison of target gene overlap between a Dioscorea-specific kit and the universal Angiosperm-353 kit of Johnson et al. (2018; Systematic Biology 0:1–13)
DOI: 10.5061/dryad.4n2fk97/7
title: SotoGomez_AppendixS8_DioscoreaKit_AngiospermV1kit_Comparison

description: Comparison of target gene overlap between a Dioscorea-specific kit and the universal Angiosperm v. 1 kit of Buddenhagen et al. (2016; bioRxiv doi: https://doi.org/10.1101/086298)
DOI: 10.5061/dryad.4n2fk97/8
title: IndividualTargetGeneAlignments

description: Individual gene alignments used for coalescent-based and concatenated phylogenomic analyses
DOI: 10.5061/dryad.55sc38s/1
title: Supplementary_data

description: Analyzed data file with the breakdown coefficients of cotton–strips (k cotton), green–tea (k green), rooibos–tea (k red), global litter decay rate (K) and the long–term carbon stabilization factor (S). Data file include standardized and raw covariates, temperature and pH.
DOI: 10.5061/dryad.5j8321f/1
title: Table S1

description: The raw occurrence data downloaded from the Paleobiology Database (PBDB) on 6 August 2018. Please see README for search parameters and requested attribution for PBDB.
DOI: 10.5061/dryad.5j8321f/2
title: Table S2

description: The occurrence dataset used from the Paleobiology Database (PBDB) that has been filtered, validated, and has had stratigraphic singletons removed. Please see README for requested attribution for PBDB.
DOI: 10.5061/dryad.5j8321f/3
title: Table S3

description: Summary statistics of the 999 bootstrap replicates of μ3 and μg extinction rates. Blank cells indicate time bins where extinction rates could not be calculated.
DOI: 10.5061/dryad.6320ph4/1
title: Raw data and R analysis files

description: Data and R code to reproduce analyses and figures. R code is given in .Rmd & R files. The .Rmd files are best viewed in RStudio, but can be opened in any text editor. All code is commented.
DOI: 10.5061/dryad.7g227bm/1
title: Data used for the analysis

description: This excel file contains size and color category of each species in 5 different insect groups (Orthoptera, Mantidae, Phasmatidae, Saturniidae, and Sphingidae).
DOI: 10.5061/dryad.8br4n80/1
title: MMRV Validation Readme file

description: Readme file
DOI: 10.5061/dryad.8br4n80/2
title: Predicate Comparisons
DOI: 10.5061/dryad.8br4n80/3
title: DBS v Neat sera
DOI: 10.5061/dryad.8br4n80/4
title: 2013 DRC DHS Survey Data
DOI: 10.5061/dryad.8qr3090/1
title: Compound-specific amino acid δ13C and δ15N values of resources and consumers from constructed trophic chains/feeding trials

description: The file contains the compound-specific isotope values (13C and 15N) of amino acids from food resources and consumers in the trophic chains from the feeding trials. Column names include the ID of the sample, the respective species name (see "Taxonomic names"), the common name for the species that was used in the publication, the prey of predators in the feeding trials, the basal resource of consumers, and the trophic level.
DOI: 10.5061/dryad.b30mh0p/1
title: Data_Meyer_et_al_-_Crop_identity_and_memory_effects_on_aboveground_arthropods_in_a_long-term_crop_rotation_experiment

description: In the dataset, we present data about the experimental design, management, soil mesofauna and aboveground species in a long-term crop rotation experiment.
DOI: 10.5061/dryad.b97428m/1
title: Lindeman and Yack Data set

description: Data set supporting figures and analyses on sound production mechanisms in the bark beetle, Dendroctonus valens.
DOI: 10.5061/dryad.dk22g4h/33
title: phj89_gene_models.lc.func_anno.txt

description: Functional annotation of low-confidence genes in PHJ89.
DOI: 10.5061/dryad.f5dv1t0/1
title: X155_publ

description: Flight activity data
DOI: 10.5061/dryad.f5dv1t0/2
title: X159_publ

description: Flight activity data
DOI: 10.5061/dryad.f5dv1t0/3
title: X160_publ

description: Flight activity data
DOI: 10.5061/dryad.f5dv1t0/5
title: Positions_publ

description: Derived monthly positions of individuals X155, X159 and X160
DOI: 10.5061/dryad.f5dv1t0/6
title: README
DOI: 10.5061/dryad.jq46143/1
title: hide_seek_scat

description: Time-to-first-detection data for 319 trees. The columns are: tree = a unique identifier for each tree; ttd = time-to-detection (in minutes) with NA indicating no detection within 10 minutes; pellets = the number of koala faecal pellets dropped around the tree; difficulty = the perceived level of search difficulty (e = easy, m = medium, d = difficult); tool = the search method (glove = gloved hand, rake = gloved hand + rake); observer = an identifier for each of the nine observers.
DOI: 10.5061/dryad.k2t648q/1
title: Egg, morphometric and telomeric data for all Ctenophorus pictus individuals

description: Data of lab hatched and raised painted dragons, generated in Excel. ID refers to individual hatchlings used in the experiment, SVL = snout-vent length, TL = total length, RelTel = relative telomere length, telb = telomere primers, 18S = reference gene, run no refers to the qpcr run number the samples were amplified in
DOI: 10.5061/dryad.kq27n36/4
title: Male Phenotypes

description: Phenotypic data from the backcrossed males
DOI: 10.5061/dryad.kq27n36/5
title: Female Phenotypes

description: Phenotypic data from the backcrossed females
DOI: 10.5061/dryad.kq27n36/6
title: female QTL object

description: r/QTL object for female data (this has the genotypes, linkage map, and phenotypes; requires package r/QTL)
DOI: 10.5061/dryad.kq27n36/7
title: male QTL object

description: r/QTL object for male data (this has the genotypes, linkage map, and phenotypes; requires package r/QTL)
DOI: 10.5061/dryad.kq27n36/8
title: male eQTL object

description: QTL object for the imported read counts ($abundance = TPM scales read counts, $counts = raw read counts,  $length = transcript length) for males (requires package tximport)
DOI: 10.5061/dryad.kq27n36/9
title: female eQTL object

description: QTL object for the imported read counts ($abundance = TPM scales read counts, $counts = raw read counts,  $length = transcript length) for females (requires package tximport).
DOI: 10.5061/dryad.n88kb1m/10
title: code to analyze hypothesis test for sexual selection using bootstrap
DOI: 10.5061/dryad.n88kb1m/11
title: code to analyze genotypic effects on ISC
DOI: 10.5061/dryad.n88kb1m/12
title: data to analyze association of SNPs with CSP and ISC

description: These data are for the candidate genes. Each SNP is listed without any identifying information and only variable sites are provided. A code relating each SNP number to the particular gene is contained in the fasta zip file with full alignments for each locus.
DOI: 10.5061/dryad.n88kb1m/13
title: raw ISC data
DOI: 10.5061/dryad.n88kb1m/5
title: premating data
DOI: 10.5061/dryad.n88kb1m/6
title: code to analyze population differences in ISC
DOI: 10.5061/dryad.n88kb1m/7
title: code to analyze correlation between ISC and CSP
DOI: 10.5061/dryad.n88kb1m/8
title: Code to analyze differences in variance in reproduction
DOI: 10.5061/dryad.n88kb1m/9
title: raw CSP data
DOI: 10.5061/dryad.nj2n99s/1
title: Data used for generating the figures

description: The Excel file contains all the individual entries used to plot the figures presented in the study. The file contains a description of all the parameters and abbreviations used in the file.
DOI: 10.5061/dryad.nr1hs48/1
title: Data for all analyses

description: This data was collected in the field. Each file contains the data for a different analysis and the column headings are the same as the variables stated in the paper. The title specifies the analysis the data is used.
DOI: 10.5061/dryad.q41m844.1
title: Data from: Accurate predictions of coexistence in natural systems require the inclusion of facilitative interactions and environmental dependency
DOI: 10.5061/dryad.q41m844.2
title: Data from: Accurate predictions of coexistence in natural systems require the inclusion of facilitative interactions and environmental dependency
DOI: 10.5061/dryad.q41m844.2/1.2
title: Seed rate data
DOI: 10.5061/dryad.q41m844.2/2.2
title: Fecundity data
DOI: 10.5061/dryad.qs13nt1/1
title: all species occupancy covariate file

description: This contains the data on occupancy covariates used for all three species in our logistic regression models.
DOI: 10.5061/dryad.qs13nt1/2
title: Leopard detection matrix and covariates

description: This file contains the detection matrix and detection covariates used for leopard in our logistic regression models.
DOI: 10.5061/dryad.qs13nt1/3
title: Wolf detection matrix and covariates

description: This file contains the detection matrix and detection covariates used for wolf in our logistic regression models.
DOI: 10.5061/dryad.qs13nt1/4
title: Hyena detection matrix with covariates

description: This file contains the detection matrix and detection covariates used for hyena in our logistic regression models.
DOI: 10.5061/dryad.t46kr73/12
title: one7two5
DOI: 10.5061/dryad.t46kr73/13
title: one7two5three1
DOI: 10.5061/dryad.tf0s1qg/1
title: Zip file of observational and experimental data

description: Please see the readme file for a detailed description of the data
DOI: 10.17632/xpkhjgjt3t.1
title: Data for: Prevalence of sports-related injuries in Paralympic judo: an exploratory study

description: Adapted questionnaire for blind athletes. ICD-codes of injuries reported by Paralympic judokas.
DOI: 10.17632/yvp53fcd58.1
title: Data for: Evolution of strike-slip fault network, the northwestern foreland of Tunisia

description: Simplified tectonic sketch showing the study area framework
DOI: 10.17632/zw8fkvndps.1
title: Data for: Evidence from Cape Proteaceae that high relative bark thickness is correlated with high bark thickness growth rates.

description: bark, stem, age and branching data for MidgleySAJBot
DOI: 10.5061/dryad.037jr6v/1
title: Data of Atlantic cod stock

description: Here the data of Spawning Stock Biomass (SSB), Fishing Mortality (F) and Sea Surface Temperature (SST) for the 19 cod stocks used in the study can be found. SSB and F derived from stock assessment developed by the institutions across the North Atlantic: ICES, NAFO, DFO and NOAA. The SST were collated from the NOAA Extended Reconstructed Sea Surface Temperature dataset (ERSST, www.ncdc.noaa.gov) version 4.
DOI: 10.5061/dryad.04q1035/1
title: Temporal changes in subdiscipline diversity between 1990 and 2012

description: This is a compressed folder containing the files underlying the interactive version of Fig. S4 of manuscript (http://data.idiv.de/repo/Accelerating_interdisciplinarity_in_biodiversity_sciences/). This interactive figure allows one to examine terms and subdisciplines associated with each concept in each time step.
DOI: 10.5061/dryad.04q1035/2
title: Model output of continuous time dynamic topic model (LDA-cDTMs) of biodiversity literature (1990 - 2012)

description: This file contains the ID of each article, the time window it was published (1990-1995, 1996-2000, 2001-2005, 2006-2012), the research area of the journal in which the article was published (following Thomson-Reuters), and the most probable topic assigned to each article.
DOI: 10.5061/dryad.145mg74/3
title: Fatty acid data for six bird species

description: Fatty acid data for six bird species, including accession numbers at the Natural History Museum of Oslo
DOI: 10.5061/dryad.2mj7019/1
title: SupportingInformation

description: MATLAB code “ADH_plasticity.m”
DOI: 10.5061/dryad.352385k/1
title: Data used to generate life history space figure

description: The data used to generate the figure showing life history space (Figure 4). Additionally, final adult weight is included. These data were generated by the model used within the paper.
DOI: 10.5061/dryad.352385k/2
title: Extant max and min lamprey life histories data

description: Data used to generate Figure 1, the life history space occupied by lampreys. Values were the minimum and maximum values from Renaud 2011 publication (Lampreys of the world)* for species which were known to be parasitic or non-parasitic. Unusual species, (i.e., dwarf parasitics) were not included in these minimums and maximums to clarify the meaning of the figure, because it is conceptual. *Renaud, Claude. (2011). Lampreys of the World. An Annotated and Illustrated Catalogue of Lamprey Species Known to Date.
DOI: 10.5061/dryad.352385k/3
title: Lamprey life history data book

description: All fecundity data extracted from Renaud's 2011 publication (Lampreys of the world): Renaud, Claude. (2011). Lampreys of the World. An Annotated and Illustrated Catalogue of Lamprey Species Known to Date.
DOI: 10.5061/dryad.352385k/4
title: Data for histograms_weight and counts

description: Data used to generate histograms, which were developed by taking the number of observations at an adult body size generated by each model realization.
DOI: 10.5061/dryad.3hv23t3/1
title: Shell size measurements of bivalves/brachiopods from Fonte Coberta/Rabacal
DOI: 10.5061/dryad.3m9r7f7/1
title: SI_TableS1

description: Mycoheterotrophic plants dataset. Dataset with the records of mycoheterotrophic plants. It contains the coordinates where the plants were collected (lat / lon), and the coordinates from the centroids of the grid cells where those records were found (Centroid_X / Centroid_Y). The variables from BioClim, HWSD, Gleam are standardized.
DOI: 10.5061/dryad.45058jq/5
title: pairwise_fst

description: This data file contains a square matrix of Fst values between each population in the ecophys experiments. See M&M section 2.5. These data were originally estimated and presented in Stankowski et al 2015 (Evolution 69:3054-3068).
DOI: 10.5061/dryad.45058jq/6
title: population_climate

description: This data file contains population level information about climatological variables collected from WORLDCLIM. See M&M section 2.5.
DOI: 10.5061/dryad.45058jq/7
title: biomass

description: This data file contains above and below-ground biomass data. See M&M section 2.6.
DOI: 10.5061/dryad.45058jq/8
title: myb2_antho_cosegregation

description: This data file contains myb2 genotypes, and visible stem and leaf anthocyanins for a population of f2's from a cross between red and yellow parents.
DOI: 10.5061/dryad.45j0r70/10
title: M2_IgM_R2.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by two rounds of selection using HIV MGRM8 SOSIP.Immunoglobulin heavy chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 2 (R2)
DOI: 10.5061/dryad.45j0r70/11
title: M2_LLC_R1.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by two rounds of selection using HIV MGRM8 SOSIP. Immunoglobulin lambda light chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 1 (R1)
DOI: 10.5061/dryad.45j0r70/12
title: M2_LLC_R2.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by two rounds of selection using HIV MGRM8 SOSIP.Immunoglobulin lambda light chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 2 (R2)
DOI: 10.5061/dryad.45j0r70/5
title: M1_IgM_R1.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by one round of selection using HIV MGRM8 SOSIP. Immunoglobulin heavy chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 1 (R1)
DOI: 10.5061/dryad.45j0r70/6
title: M1_IgM_R2.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by one round of selection using HIV MGRM8 SOSIP. Immunoglobulin heavy chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 2 (R2)
DOI: 10.5061/dryad.45j0r70/7
title: M1_LLC_R1.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by one round of selection using HIV MGRM8 SOSIP. Immunoglobulin lambda light chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 1 (R1)
DOI: 10.5061/dryad.45j0r70/8
title: M1_LLC_R2.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by one round of selection using HIV MGRM8 SOSIP.Immunoglobulin lambda light chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 2 (R2)
DOI: 10.5061/dryad.45j0r70/9
title: M2_IgM_R1.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by two rounds of selection using HIV MGRM8 SOSIP. Immunoglobulin heavy chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 1 (R1)
DOI: 10.5061/dryad.4n2fk97/9
title: SotoGomez_IndividualTargetGeneTrees

description: Individual gene trees used for coalescent-based phylogenomic analysis and paralog identification.
DOI: 10.5061/dryad.56451sc/1
title: Data for Maternal effects obscure condition-dependent sex allocation in changing environments

description: Data for Maternal effects obscure condition-dependent sex allocation in changing environments
DOI: 10.5061/dryad.5rk56gg/1
title: Output of data set

description: The filled-out questionnaires (see readme file) were numbered, pre-coded and typed into a SPSS data sheet (IBM Statistics SPSS20, IBM Chicago). Contact data of participants and US representatives were listed in a separate data sheet to keep the analysis anonymous. Data on course duration were fragmentary and varied a lot from location to location, so that scoping review was obtained. If time specifications could not be confirmed by internet research, they were excluded from data analysis.
DOI: 10.5061/dryad.62n8p0q/1
title: Raw scattering data
DOI: 10.5061/dryad.62n8p0q/2
title: STATA functions for LDA
DOI: 10.5061/dryad.62n8p0q/3
title: R code for SVM
DOI: 10.5061/dryad.6g0p74j/1
title: Data