cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.tdz08kq21
title: The timings of host diapause and epidemic progression mediate host genetic diversity and future epidemic size in Daphnia-parasite populations

description: Epidemics commonly exert parasite-mediated selection and cause declines in
 host population genetic diversity. This could lead to evolution of
 resistance in the long-term and smaller subsequent epidemics.
 Alternatively, the loss of genetic diversity could increase host
 vulnerability to future disease spread and larger future epidemics.
 Matters are made more complex by the fact that a great many host organisms
 produce diapausing life stages in response to environmental change (often
 as a result of sexual reproduction) e.g., plant seeds and invertebrate
 resting eggs. These diapausing stages can disrupt the relationship between
 past epidemics, host genetic diversity and future epidemics because they
 allow host dispersal through time. Specifically, temporally dispersing
 hosts avoid infection and thus selection from contemporary parasites, and
 also archive genetic variation for the future. We studied 80 epidemics in
 20 semi-natural populations of the temporally dispersing crustacean
 Daphnia magna and its sterilising bacterial parasite Pasteuria ramosa, and
 half of these populations experienced a simulated environmental
 disturbance treatment. We found that early initiation of diapause relative
 to the timing of the epidemic led to greater host genetic diversity and
 reduced epidemic size in the subsequent year, but this was unaffected by
 environmental disturbance.
description: These data were collected from twenty semi-natural outdoor
 crustacean-bacteria host-parasite populations over the course of four
 years (a total of eighty epidemics). The host was Daphnia magna and the
 parasite was the sterilising bacterium, Pasteuria ramosa. These data
 comprise of Pasteuria epidemic size, timing of mid epidemic and epidemic
 scaling constant (rate of infection), total host investment in sexual
 (diapausing) resting eggs, timing of sex, and sex scaling constant (rate
 at which hosts invest in sexual reproduction/diapause), expected
 heterozygosity and fiuture epidemic size for each population. Both
 epidemic size/host investment in sex and timings of epidemics and host sex
 were determined using three-parameter logistic models fitted to data from
 each invividual epidemic. These data have been used in structural equation
 modelling.
DOI: 10.5061/dryad.1g1jwstzs
title: Comparison of allosteric signaling in DnaK and BiP using mutual information between simulated residue conformations

description: Molecular Dynamics trajectories of the Hsp70 chaperones DnaK and BiP.
 System configurations include DnaK or BiP bound to ATP, ATP exchanged to
 ADP, or the NRLLLTG peptide.
description: Molecular Dynamics simulations were created using the AMBER software and
 processed using CPPTRAJ from the AmberTools software suite.
description: The .prmtop file is a text file as used by the AMBER
 software for molecular dynamics simulations and contains the
 topology of the molecular system. Any text editor should be able to read
 the file, though it is designed towards being used by the
 program. The .nc file is a binary file format for
 trajectories created by the AMBER
 software. .prmtop and .nc files can be read
 by the program CPPTRAJ (of the AmberTools software
 suite) or molecular viewers like VMD.
 Both AmberTools and VMD are free to download and use.
DOI: 10.5061/dryad.zpc866t9z
title: BMP/SMAD1/5 signaling in the endometrial epithelium is essential for receptivity and early pregnancy

description: The biological processes that control endometrial receptivity and embryo
 implantation are critical for the successful outcome of pregnancy. The
 endometrium is the complex inner lining of the uterine wall that is under
 the cyclical control of estrogen and progesterone and is a site of
 intimate contact between mother and blastocyst. The bone morphogenetic
 signaling (BMP) pathway is a highly conserved signaling pathway that
 controls key cellular processes throughout pregnancy and exerts
 intracellular effects via the SMAD1/5 transcription factors. To delineate
 the endometrial compartment–specific roles of BMP signaling, we generated
 mice with epithelial-specific conditional deletion of SMAD1/5 using
 Lactoferrin-icre (Smad1flox/flox;Smad5flox/flox;Lactoferrin-cre, “Smad1/5
 cKO”). Histological analysis of the reproductive tracts showed that
 Smad1/5 cKO mice were developmentally normal and displayed no defects in
 glandular morphology. In fertility analyses, single SMAD1 or SMAD5
 deletion had no effect on fertility; however, double-conditional deletion
 of SMAD1 and SMAD5 resulted in severe subfertility. Timed mating analyses
 revealed endometrial receptivity defects in the Smad1/5 cKO mice beginning
 at 3.5 days post coitum (dpc) that perturbed embryo implantation at 4.5
 dpc, as demonstrated by the detection of unattached blastocysts in the
 uterus, decreased COX2 expression, and FOXO1 cytoplasmic mislocalization.
 We also found that defects that arose during peri-implantation adversely
 affected embryonic and decidual development at 5.5 and 6.5 dpc. Thus,
 uterine epithelial BMP/SMAD1/5 signaling is essential during early
 pregnancy and SMAD1/5 epithelial-specific deletion has detrimental effects
 on stromal cell decidualization and pregnancy development.
DOI: 10.5061/dryad.0rxwdbs2x
title: Individual variability in space use near power lines by a long-lived territorial raptor

description: Evaluating species responses to anthropogenic infrastructures and other
 habitat changes is often used to assess environmental impacts and to guide
 conservation actions. However, such studies are generally carried out at
 the population-level, disregarding inter-individual variability. Here, we
 investigate population- and individual-level responses towards power lines
 of a territorial raptor, the Bonelli’s eagle Aquila fasciata. We used
 GPS-PTT tracking data of seventeen adult eagles to model space use as a
 function of distance to transmission and distribution lines, while
 accounting for other habitat features known to affect this species. At
 population level, eagles increased the intensity of space use in the
 proximity of power lines (up to 1000 m), suggesting an attraction effect.
 At individual level, some eagles shared the general population attraction
 pattern, while others showed reduced intensity of space use in the
 proximity of power lines. These differential responses were unrelated to
 the sex of individuals, but were affected by the characteristics of the
 power grid, with a tendency for apparent attraction to be associated with
 individuals occupying home ranges with a denser network of transmission
 lines and transmission pylons. However, the study could not rule out the
 operation of other potentially influential factors, such as individual
 idiosyncrasies, the spatial distribution of prey availability, and the
 availability of natural perches and nesting sites. Overall, these results
 suggest that power lines may drive different behaviors and have
 differential impacts across individuals, with those attracted to the
 proximity of power lines potentially facing increased risk of mortality
 through electrocution and collision, and those avoiding power lines being
 potentially subject to exclusion effects. More generally, our results
 reinforce the need to understand individual variability when assessing and
 mitigating impacts of anthropogenic infrastructures.
description: See manuscript for details
 about data collection.
DOI: 10.5061/dryad.xsj3tx9hk
title: Data for: Functional, sexual and seasonal variation in the chemical constituents from feces of adult Iberian wolves

description: Chemical signals play an important role in intraspecific and interspecific
 communication of many mammals, We described the chemicals found in fresh
 feces of adult wolves by means of analyses using gas chromatography-mass
 spectrometry (GC-MS) of samples collected from wild breeding groups. We
 identified 56 compounds in the feces, mainly heterocyclic aromatic organic
 compounds such as indole or phenol, but also steroids, such as
 cholesterol, carboxylic acids and their esters between n-C4 and n-C18,
 aldehydes, alcohols and significant quantities of squalene and
 α-tocopherol, which would increase the chemical stability of feces on
 humid substrates. All samples visually identified as wolves were
 subsequently identified to species level by sequencing a small fragment of
 mtDNA and sexed typing DBX6 and DBY7 sex markers. There is variability in
 the number and proportions of compounds between sexes, which could be
 indicative of their function as chemical signals. We also found
 variability in different reproductive states, especially in odorous
 compounds, steroids and α-tocopherol. Feces with a presumed marking
 function had higher proportions of α-tocopherol and steroids than feces
 with non-marking function. Therefore, these compounds could be involved in
 intragroup and intergroup communication of wolves and their levels could
 be directly related with the wolf’s physiological status.
DOI: 10.5061/dryad.51c59zwb1
title: Life history data on married women of the historical population of île aux Coudres

description: Evidence from natural populations shows that changes in environmental
 conditions can cause rapid modifications in the evolutionary potential of
 phenotypes, partly through genotype-by-environment interactions (G×E).
 Therefore, the overall rate of microevolution should depend on
 fluctuations in environmental conditions, even when directional selection
 is sustained over several generations. We tested this hypothesis in a
 preindustrial human population that experienced a microevolutionary change
 in age at first reproduction (AFR) of mothers, using the annual infant
 mortality rate (IMR) as an indicator of environmental conditions during
 their early life. Using quantitative genetics analyses, we found that G×Es
 explained a non-negligible fraction of the additive genetic variance in
 AFR and in relative fitness, as well as of the genetic covariance between
 AFR and fitness (i.e. the Robertson-Price covariance). The covariance was
 stronger for individuals exposed to unfavorable early-life environmental
 conditions. Our results unravel the presence of G×Es in an important life
 history trait and its impact on the rate of microevolution, which appears
 to have been sensitive to short-term fluctuations in local environmental
 conditions.
description: The data is part of the île
 aux Coudres evolutionary biology project and the population Register which
 contains vital information. The data was reconstructed using parish
 records on deaths, births, and marriages. It has been processed using
 statistical tools, in the case of the current study we used quantitative
 genetic mixed effect models. The data include information on 572 married
 woman during a period of 140 years from the 18th to early 20th century. We
 included the final dataset used which contains all the pertinent variables
 required to reproduce the analyses we conducted for this
 study.<br>
DOI: 10.5061/dryad.q2bvq83mw
title: Hand-written letters classification measurement data

description: Deep neural networks with applications from computer vision to medical
 diagnosis1-5 are commonly implemented using clock-based processors6-14,
 where computation speed is mainly limited by the clock frequency and the
 memory access time. In the optical domain, despite advances in photonic
 computation15-17, the lack of scalable on-chip optical nonlinearity and
 the loss of photonic devices limit the scalability of optical deep
 networks. Here we report the first integrated end-to-end photonic deep
 neural network (PDNN) that performs sub-nanosecond image classification
 through direct processing of the optical waves impinging on the on-chip
 pixel array as they propagate through layers of neurons. Within each
 neuron, linear computation is performed optically and the nonlinear
 activation function is realised opto-electronically, enabling a
 classification time of under 570 ps, which is comparable with a single
 clock-cycle of state-of-the-art digital platforms. A uniformly distributed
 supply light provides the same per-neuron optical output range enabling
 scalability to large-scale PDNNs. Two- and four-class classification of
 handwritten letters with accuracies of higher than 93.8% and 89.8% are
 demonstrated, respectively. Direct clock-less processing of optical data
 eliminates analogue-to-digital conversion and the requirement for a large
 memory module, enabling faster and more energy-efficient neural networks
 for the next generations of deep learning systems.
DOI: 10.5061/dryad.s1rn8pk9t
title: Data from: Feedforward attentional selection in sensory cortex

description: Salient objects grab attention because they stand out from their
 surroundings. Whether this phenomenon is accomplished by bottom-up sensory
 processing or requires top-down guidance is debated. We tested these
 alternative hypotheses by measuring how early and in which cortical
 layer(s) neural spiking distinguished a target from a distractor. We
 measured synaptic and spiking activity across cortical columns in
 mid-level area V4 of male macaque monkeys performing visual search for a
 color singleton. A neural signature of attentional capture was observed in
 the earliest response in the input layer 4. The magnitude of this response
 predicted response time and accuracy. Errant behavior followed errant
 selection. Because this response preceded top-down influences and arose in
 the cortical layer not targeted by top-down connections, these findings
 demonstrate that feedforward activation of sensory cortex can underlie
 attentional priority.
description: Data were collected using linear multielectrode arrays positioned
 orthogonal to area V4 in the prelunate gyrus of two macaque monkeys
 performing a visual search task.
description: Data are formatted for use in MATLAB. ReadMe contains information
 pertinent to the dataset variables.
DOI: 10.5061/dryad.4mw6m90cq
title: Stingless bees (Apidae: Meliponini) at risk in western Mexico

description: The current global pollinator crisis highlights the need to investigate
 the diversity and distribution of ecologically and socially relevant taxa
 such as tropical stingless bees. We analyzed the diversity and composition
 of stingless bee (Meliponini) communities at a regional scale in
 west-central Mexico using an extensive direct search along an altitudinal
 gradient encompassing different climate and vegetation types. Our
 hypothesis was that meliponine bee diversity would be greater in tropical
 warmer. We found a total of 14 meliponine bee species, including
 two new records for the region. We identified three types of bee
 assemblages: one in hot lowland climates with tropical dry forest
 vegetation, one in temperate highland climates with mixed oak-pine forest
 vegetation, and one in the warm ecotone with mixed subdeciduous forest
 vegetation between the hot and temperate zones. As expected, the lowland
 assemblage in the tropical dry forest vegetation had the greatest
 diversity (11 species). In the warm ecotone, meliponine species
 from temperate highlands and hot lowland habitats converged; this region
 should therefore be considered a high conservation priority area. Fifty
 percent of the meliponine bees found are endemic and have a very low
 incidence, suggesting that their populations may be endangered. Given the
 extensive and ongoing change of land use to avocado plantations in the
 warm ecotone and temperate highlands with mixed oak-pine forest vegetation
 cover, specific conservation plans should be generated to conserve the
 natural ecosystems and this important native pollinator group.This data
 set provides the information about Melliponin sampling in Michoacan,
 Mexico during 2018-2019. It provides the locality name, altitude,
 vegetation type and climate per sampling site.
description: Stingless bees were sampled by
 direct search, following Sutherland’s (1996) proposal. At each site, two
 people searched for bees for a minimum of four to a maximum of six
 consecutive hours in an area of 2 Km<sup>2</sup>. Searching
 time differences depended on the number of bee species observed, if after
 four hours no more new bee species appeared we stopped the sampling in
 that site. Sampling days began 8-9 am depending on weather conditions. At
 each location we chose sites where flowering was evident, with water
 sources or salt deposits nearby. Bees were collected with entomological
 nets or entomological aspirators. We also considered information provided
 by local people about sites with bee aggregations, bee nests and floral
 patches. A single sampling session was performed at each site between
 February 2018 and June 2019. Because meliponine bees are active throughout
 the year, they were sampled when plants where flowering according to the
 type of vegetation and on days without rain or strong
 winds.
DOI: 10.5281/zenodo.17964850
title: Database experimental data (dataset 1 of 4) "Local measurement of aerosol retention for bubbly flows with a wire-mesh sensor", dataset 1 of 4, calibration series

description: ## DATABASE EXPERIMENTAL DATA (DATASET 1 OF 4) "LOCAL MEASUREMENT OF AEROSOL RETENTION FOR BUBBLY FLOWS WITH A WIRE-MESH SENSOR", DATASET 1 OF 4, CALIBRATION SERIESReference Open-Access journal publication: Alvaro Ramos Perez, Terttaliisa Lind, Victor Petrov, Annalisa Manera, Horst-Michael Prasser, Local measurement of aerosol retention for bubbly flows with a wire-mesh sensor, Nuclear Engineering and Design, vol. 446, p. 114 550, Jan. 2026 doi: 10.1016/j.nucengdes.2025.114550

 

## THIS DATA CORRESPONDS TO THE DATASET 1 OF 4, CALIBRATION SERIES. THE ENTIRE DATASET LIST OF THE PUBLICATION IS:-DATASET 1 OF 4, CALIBRATION SERIES-DATASET 2 OF 4, AEROSOL SERIES-DATASET 3 OF 4, AIR SERIES-DATASET 4 OF 4, CO2 SERIES

## WMS DATA"README_WMS.txt": Description of data matrix "WMS.csv" and data format "WMS.zip"
DOI: 10.5281/zenodo.17964851
title: Database experimental data (dataset 1 of 4) "Local measurement of aerosol retention for bubbly flows with a wire-mesh sensor", dataset 1 of 4, calibration series

description: ## DATABASE EXPERIMENTAL DATA (DATASET 1 OF 4) "LOCAL MEASUREMENT OF AEROSOL RETENTION FOR BUBBLY FLOWS WITH A WIRE-MESH SENSOR", DATASET 1 OF 4, CALIBRATION SERIESReference Open-Access journal publication: Alvaro Ramos Perez, Terttaliisa Lind, Victor Petrov, Annalisa Manera, Horst-Michael Prasser, Local measurement of aerosol retention for bubbly flows with a wire-mesh sensor, Nuclear Engineering and Design, vol. 446, p. 114 550, Jan. 2026 doi: 10.1016/j.nucengdes.2025.114550

 

## THIS DATA CORRESPONDS TO THE DATASET 1 OF 4, CALIBRATION SERIES. THE ENTIRE DATASET LIST OF THE PUBLICATION IS:-DATASET 1 OF 4, CALIBRATION SERIES-DATASET 2 OF 4, AEROSOL SERIES-DATASET 3 OF 4, AIR SERIES-DATASET 4 OF 4, CO2 SERIES

## WMS DATA"README_WMS.txt": Description of data matrix "WMS.csv" and data format "WMS.zip"
DOI: 10.5061/dryad.2v6wwpzqt
title: Anti-bat ultrasound production in moths is globally and phylogenetically widespread

description: Warning signals are well known in the visual system, but rare in other
 modalities. Some moths produce ultrasonic sounds to warn bats of noxious
 taste or to mimic unpalatable models. Here we report results from a
 long-term study across the globe, assaying moth response to playback of
 bat echolocation. We tested 252 genera, spanning most families of
 large-bodied moths, and document anti-bat ultrasound production in 52
 genera, with eight new subfamily origins described. Based on acoustic
 analysis of ultrasonic emissions and palatability experiments with bats,
 it seems that acoustic warning and mimicry are the raison
 d'etre for sound production in most moths. However, some
 moths use high duty cycle ultrasound capable of jamming bat sonar. In
 fact, we find preliminary evidence of independent origins of sonar jamming
 in at least six subfamilies. Palatability data indicates that jamming and
 warning are not mutually exclusive strategies. To explore the possible
 organization of anti-bat warning sounds into acoustic mimicry rings, we
 intensively studied a community of moths in Ecuador and, using machine
 learning approaches, found five distinct acoustic clusters. While these
 data represent an early understanding of acoustic aposematism and mimicry
 across this megadiverse insect order, it is likely that
 ultrasonically-signaling moths comprise one of the largest mimicry
 complexes on earth.
DOI: 10.5061/dryad.zpc866tb0
title: Spectral sensitivity transition in the compound eyes of a twilight-swarming mayfly and its visual ecological implications

description: Aquatic insect species that leave the water after larval development, such
 as mayflies, have to deal with extremely different visual environments in
 their different life stages. Measuring the spectral sensitivity of the
 compound eyes of the virgin mayfly (Ephoron virgo) resulted in differences
 between the sensitivity of adults and larvae. Larvae were primarily
 green-, while adults were mostly UV-sensitive. The sensitivity of adults
 and larvae were the same in the UV, but in the green spectral range,
 adults were 3.3 times less sensitive than larvae. Transmittance spectrum
 measurements of larval skins covering the eye showed that the removal of
 exuvium during emergence cannot explain the spectral sensitivity change of
 the eyes. Taking numerous sky spectra from the literature, the ratio of UV
 and green photons in the skylight was shown to be maximal for θ ≈ − 13°
 solar elevation, which is in the θmax = -14.7° and θmin = -7.1° typical
 range of swarming that was established from webcam images of real
 swarmings. We suggest that spectral sensitivity of both the larval and
 adult eyes are adapted to the optical environment of the corresponding
 life stages.
DOI: 10.5061/dryad.wdbrv15r2
title: Response of 25-day old Eucalyptus globulus to elevated CO2

description: Increasing [CO2] may influence commercial crop and timber yield. While
 selection of genotypes sensitive to elevated [CO2] (e[CO2]) appears
 possible in agricultural crops, there is limited evidence for
 genotype-by-CO2 (G×CO2) interactions in commercial tree species. We
 examined [CO2] responsiveness in 124 open-pollinated Eucalyptus globulus
 subspecies globulus (E. globulus) families with the aim of assessing
 whether G×CO2 interactions are detectable in seedlings for early-age
 screening. Plants were grown in ambient (a[CO2]; ~405 μmol mol-1) and
 e[CO2] (640 μmol mol-1) and harvested 25 days after germination. Total,
 shoot and root dry weights were determined for each plant. Carbon isotopic
 discrimination against 13C (Δ13C) was determined at the family level. We
 observed highly significant (p&lt;0.0001) increases in mean total,
 shoot, and root dry weights. Mixed-model equations were used to estimate
 the main and interaction effects of the G×CO2 for each mass trait. The
 main effects from the mixed model output ([CO2] and individual-tree
 effects) were significant for all traits. However, [CO2]-by-individual
 tree interactions were non-significant for all traits, indicating little
 G×CO2 interaction. A secondary aim was to examine the correlation between
 greenhouse and mature-age growth from breeding trials that use common
 families conducted under ambient [CO2]. These correlations were
 non-significant, suggesting early growth is not necessarily indicative of
 later-age responses.  Our results suggest that while early growth
 of E. globulus is enhanced under e[CO2], genotypes respond relatively
 uniformly to e[CO2] and little opportunity exists for seedling-based
 selection at the population level based upon the response of plants during
 the first weeks of growth.