cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20486031
title: Mathematical Modelling of Molybdate reduction by a dye-decolorizing bacterium and the study of activation energy for reductionMathematical Modelling of the Reduction, Substrate and Metal Inhibition Kinetics of Molybdate reduction by a dye-decolourising bacterium and the study of activation energy for reduction

description: A molybdenum-reducing bacterium with the novel ability to decolourise various dyes is reported. The absorption spectrum of the molybdenum reduced product suggested that it is a reduced phosphomolybdate. Optimum conditions for molybdenum reduction were ammonium sulphate 4g/L, pH of 8 and at 37°C. Arabitol was the best electron donor. The highest Mo-blue was observed at the phosphate concentration of 2.5 mM and sodium molybdate at 10 mM. <em>Pseudomonas</em> sp. MM02 was able to decolourise the dye tartrazine maximally at 75.9%, followed by Reactive Red 120 at 75.4 % and Reactive Brown 10 at 63.63%. Substrate inhibition kinetics was investigated and based on the best model; Haldane, the maximum specific reduction rate, the concentration of substrate at the half-maximal reduction rate, and inhibition constant represented by <em>qmax</em>, <em>ks</em> and <em>Ki</em> were 6.71 μmole Mo-blue h-1, 9.97 mM and 65.59 mM, respectively. The heavy metals mercury and silver at 1 mg/L completely inhibited molybdenum reduction. The effect of aluminium, a common soil metal in Malaysia on the molybdenum reduction rate was mathematically modelled. The best model was Wang giving the model constants maximum reduction rate of 0.283 Mo-blue h-1, while the saturation constant (<em>Kc</em>) and inhibitory constant (m) were 5.957 mM and 5.224 mM, respectively. The plot of ln μmax against 1/T to study the effect of temperature on Mo-blue production was carried out. Regression analysis from 31-40°C resulted in activation energy of 45.074 kJ mol-1, while in the temperature range from 40-45°C, the activation energy was 49.48 kJ mol-1.
DOI: 10.6084/m9.figshare.20486031.v2
title: Mathematical Modelling of Molybdate reduction by a dye-decolorizing bacterium and the study of activation energy for reductionMathematical Modelling of the Reduction, Substrate and Metal Inhibition Kinetics of Molybdate reduction by a dye-decolourising bacterium and the study of activation energy for reduction

description: A molybdenum-reducing bacterium with the novel ability to decolourise various dyes is reported. The absorption spectrum of the molybdenum reduced product suggested that it is a reduced phosphomolybdate. Optimum conditions for molybdenum reduction were ammonium sulphate 4g/L, pH of 8 and at 37°C. Arabitol was the best electron donor. The highest Mo-blue was observed at the phosphate concentration of 2.5 mM and sodium molybdate at 10 mM. <em>Pseudomonas</em> sp. MM02 was able to decolourise the dye tartrazine maximally at 75.9%, followed by Reactive Red 120 at 75.4 % and Reactive Brown 10 at 63.63%. Substrate inhibition kinetics was investigated and based on the best model; Haldane, the maximum specific reduction rate, the concentration of substrate at the half-maximal reduction rate, and inhibition constant represented by <em>qmax</em>, <em>ks</em> and <em>Ki</em> were 6.71 μmole Mo-blue h-1, 9.97 mM and 65.59 mM, respectively. The heavy metals mercury and silver at 1 mg/L completely inhibited molybdenum reduction. The effect of aluminium, a common soil metal in Malaysia on the molybdenum reduction rate was mathematically modelled. The best model was Wang giving the model constants maximum reduction rate of 0.283 Mo-blue h-1, while the saturation constant (<em>Kc</em>) and inhibitory constant (m) were 5.957 mM and 5.224 mM, respectively. The plot of ln μmax against 1/T to study the effect of temperature on Mo-blue production was carried out. Regression analysis from 31-40°C resulted in activation energy of 45.074 kJ mol-1, while in the temperature range from 40-45°C, the activation energy was 49.48 kJ mol-1.
DOI: 10.6084/m9.figshare.20486031.v1
title: Mathematical Modelling of Molybdate reduction by a dye-decolorizing bacterium and the study of activation energy for reduction

description: A molybdenum-reducing bacterium with the novel ability to decolourise various dyes is reported. The absorption spectrum of the molybdenum reduced product suggested that it is a reduced phosphomolybdate. Optimum conditions for molybdenum reduction were ammonium sulphate 4g/L, pH of 8 and at 37°C. Arabitol was the best electron donor. The highest Mo-blue was observed at the phosphate concentration of 2.5 mM and sodium molybdate at 10 mM. <em>Pseudomonas</em> sp. MM02 was able to decolourise the dye tartrazine maximally at 75.9%, followed by Reactive Red 120 at 75.4 % and Reactive Brown 10 at 63.63%. Substrate inhibition kinetics was investigated and based on the best model; Haldane, the maximum specific reduction rate, the concentration of substrate at the half-maximal reduction rate, and inhibition constant represented by <em>qmax</em>, <em>ks</em> and <em>Ki</em> were 6.71 μmole Mo-blue h-1, 9.97 mM and 65.59 mM, respectively. The heavy metals mercury and silver at 1 mg/L completely inhibited molybdenum reduction. The effect of aluminium, a common soil metal in Malaysia on the molybdenum reduction rate was mathematically modelled. The best model was Wang giving the model constants maximum reduction rate of 0.283 Mo-blue h-1, while the saturation constant (<em>Kc</em>) and inhibitory constant (m) were 5.957 mM and 5.224 mM, respectively. The plot of ln μmax against 1/T to study the effect of temperature on Mo-blue production was carried out. Regression analysis from 31-40°C resulted in activation energy of 45.074 kJ mol-1, while in the temperature range from 40-45°C, the activation energy was 49.48 kJ mol-1.
DOI: 10.34740/kaggle/dsv/4069524
title: AutoXGB
DOI: 10.6084/m9.figshare.20486037.v1
title: Test cases for reliability assessment of the offshore wind farm electrical collector system based on MILP.xlsx

description: This dataset contains test cases for reliability assessment of the offshore wind farm electrical collector system based on MILP
DOI: 10.6084/m9.figshare.20486043
title: Mathematical Modelling of the Reduction, Substrate and Metal Inhibition Kinetics of Molybdate

description: A molybdenum-reducing bacterium with the novel ability to decolourise various dyes is reported. The absorption spectrum of the molybdenum reduced product suggested that it is a reduced phosphomolybdate. Optimum conditions for molybdenum reduction were ammonium sulphate 4g/L, pH of 8 and at 37°C. Arabitol was the best electron donor. The highest Mo-blue was observed at the phosphate concentration of 2.5 mM and sodium molybdate at 10 mM. <em>Pseudomonas</em> sp. MM02 was able to decolourise the dye tartrazine maximally at 75.9%, followed by Reactive Red 120 at 75.4 % and Reactive Brown 10 at 63.63%. Substrate inhibition kinetics was investigated and based on the best model; Haldane, the maximum specific reduction rate, the concentration of substrate at the half-maximal reduction rate, and inhibition constant represented by <em>qmax</em>, <em>ks</em> and <em>Ki</em> were 6.71 μmole Mo-blue h-1, 9.97 mM and 65.59 mM, respectively
DOI: 10.6084/m9.figshare.20486043.v1
title: Mathematical Modelling of the Reduction, Substrate and Metal Inhibition Kinetics of Molybdate

description: A molybdenum-reducing bacterium with the novel ability to decolourise various dyes is reported. The absorption spectrum of the molybdenum reduced product suggested that it is a reduced phosphomolybdate. Optimum conditions for molybdenum reduction were ammonium sulphate 4g/L, pH of 8 and at 37°C. Arabitol was the best electron donor. The highest Mo-blue was observed at the phosphate concentration of 2.5 mM and sodium molybdate at 10 mM. <em>Pseudomonas</em> sp. MM02 was able to decolourise the dye tartrazine maximally at 75.9%, followed by Reactive Red 120 at 75.4 % and Reactive Brown 10 at 63.63%. Substrate inhibition kinetics was investigated and based on the best model; Haldane, the maximum specific reduction rate, the concentration of substrate at the half-maximal reduction rate, and inhibition constant represented by <em>qmax</em>, <em>ks</em> and <em>Ki</em> were 6.71 μmole Mo-blue h-1, 9.97 mM and 65.59 mM, respectively
DOI: 10.5281/zenodo.3608340
title: Water Chemistry Profiles of Milwaukee Estuary System Sites

description: Contaminants of Emerging Concern (CECs) can be measured in waters across the United States, including the tributaries of the Great Lakes. The extent to which these contaminants affect gene expression in aquatic wildlife is unclear. This dataset presents the full hepatic transcriptomes of laboratory reared fathead minnows (<em>Pimephales promelas</em>) caged at multiple sites within the Milwaukee Estuary area of concern and control sites. Following 4 days of in situ exposure, liver tissue was removed from males at each site for RNA extraction and sequencing, yielding a total of 116 samples from which libraries were prepared, pooled, and sequenced. For each exposure site, 179 chemical analytes were also assessed. These data were created with the intention of inviting research on possible transcriptomic changes observed in aquatic species exposed to CECs. Access to both full sequencing reads of animal samples as well as water contaminant data across multiple Great Lakes sites will allow others to explore the health of these ecosystems, in support of the aims of the Great Lakes Restoration Initiative.
DOI: 10.5439/1025281
title: ARM: Sky radiation sensor: 60-second downwelling irradiances

description: Sky radiation sensor: 60-second downwelling irradiances
DOI: 10.17632/4ffkytvssp.1
title: Data for The effect of static chamber base on N2O flux in drip irrigation

description: The file contains the field data that was used for the manuscript: The effect of static chamber base on N2O flux in drip irrigation.
Metadata:
•	Field In-Adjacent: measured daily fluxes in bases placed adjacent to the dripper or with the dripper inside the base.
•	Field In: average + stdev of 12 sampling points per day, in which daily fluxes were measured in bases with a dripper at their center.
•	Fertigation – days in which fertilizer was applied in relation to the measuring time.
DOI: 10.48428/adattar/74gbfe
title: Septin-7 projects

description: Data sets created in the Septin-7 projects.
DOI: 10.5281/zenodo.839531
title: Data Availability To Ensure The Reproducibility Of The Results Of Rivaes Et Al. (2017) In The Journal Hessd.

description: These data is provided to ensure the reproducibility of the results presented in the publication authored by Rivaes et al. (2017) in the Journal of Hydrology and Earth System Sciences Discussion.
DOI: 10.5291/ill-data.8-03-910
title: Antimicrobial peptide induced phase separation in E. coli membrane mimetic systems
DOI: 10.6084/m9.figshare.18857549.v1
title: seen_datasets

description: Sequence-aware recommendation datasets for chemical compounds and open clusters of stars
DOI: 10.6084/m9.figshare.20438934
title: Supplementary Material for: Skin Treatment with Detergent Induces Dermatitis with H1-Antihistamine-Refractory Itch and Upregulates IL-4 and Th17/Th22 Cytokine Gene Expression in C57BL/6 Mice

description: <b><i>Introduction:</i></b> Repeated skin contact to detergents causes chronic irritant contact dermatitis (ICD) associated with itch sensation and eczema. However, the mechanisms of detergent-induced ICD are poorly understood. Here, we established a new murine model of detergent-induced ICD with H1-antihistamine-refractory itch. <b><i>Methods:</i></b> Ear skin of wild-type and mast cell-deficient mice on the C57BL/6 genetic background was treated with a detergent, sodium dodecyl/lauryl sulfate (SDS), daily for approximately 2 weeks with or without administration of an H1-antihistamine, fexofenadine. Skin inflammation, barrier dysfunction, and itching were analyzed. Quantitative PCR for earlobe gene expression and flow cytometry analysis for draining lymph node cells were conducted. <b><i>Results:</i></b> SDS treatment induced skin inflammation with ear swelling, increased transepidermal water loss, and hind-paw scratching behaviors in the wild-type and mast cell-deficient mice. The peak value of scratching bouts was retained for at least 48 h after the last SDS treatment. H1-antihistamine administration showed no or little reduction in the responses. SDS treatment upregulated gene expression for a Th2 cytokine IL-4 and Th17/Th22 cytokines, IL-17A, IL-17F, and IL-22, and increased cell numbers in draining lymph nodes of CD4<sup>+</sup> T, CD8<sup>+</sup> T, and γδT cells with enhanced expression of GATA3, RORγt, T-bet, or FOXP3 compared with untreated mice. <b><i>Conclusions:</i></b> The present study showed that SDS treatment of ear skin in C57BL/6 mice induces mast cell-independent skin inflammation with H1-antihistamine-refractory itch and suggested a possible Th cytokine- and/or lymphocyte-mediated regulation of the model. The model would be useful for elucidation of mechanisms for inflammation with H1-antihistamine-refractory itch in detergent-induced ICD.
DOI: 10.17608/k6.auckland.8067338.v1
title: Data: Water stable isotope signature of soil and xylem samples under different land use systems, Panama.

description: This data set contains soil and xylem water delta<sup>18</sup>O and delta<sup>2</sup>H values of soil and plant tissue samples collected in different land use systems around Santa Fe, Central Panama in 2008. The samples were collected and analysed by Francois Jost for his Masterthesis entitled "Using Stable Isotopes (D, <sup>18</sup>O) to Estimate Plant Water Uptake in Different Vegetation Types, Panama", University of Goettingen, 2009 under the supervision of Dr. Luitgard Schwendenmann.
DOI: 10.17608/k6.auckland.8067449.v1
title: Data: H and O isotope signatures of soil and xylem samples, cacao agroforest, Indonesia.

description: This data set contains soil and xylem water delta<sup>18</sup>O and delta<sup>2</sup>H values of soil and xylem samples collected from cacao and shade trees (gliricidia) in a cacao agroforest, Marena, Indonesia, from Jan 2007 to April 2008.
DOI: 10.5281/zenodo.6418762
title: Selective endocytosis controls slit diaphragm maintenance and dynamics - Supplementary Dataset

description: Supplementary Dataset to Lang et al. "<strong>Selective endocytosis controls slit diaphragm maintenance and dynamics in <em>Drosophila</em> nephrocytes."</strong> https://www.biorxiv.org/content/10.1101/2022.03.01.482547v1.full Contains unprocessed image files that were used to generate the main figures.
description: {"references": ["https://www.biorxiv.org/content/10.1101/2022.03.01.482547v1.full"]}
DOI: 10.6084/m9.figshare.14882322
title: A global dataset of seaweed net primary productivity

description: This global dataset contains a compilation of NPP records for 242 seaweed species at 419 individual sites distributed on all continents from the intertidal to 55 m depth. All records are standardized to annual aerial carbon production (g C m<sup>-2</sup> yr<sup>-1</sup>) and are accompanied by detailed taxonomical and methodological information. The dataset provides a basis for local, regional and global comparative studies of the NPP of underwater vegetation, and is pivotal for achieving a better understanding of the role seaweeds play in the global coastal carbon cycle.
DOI: 10.6084/m9.figshare.15130857.v5
title: Near-real-time MODIS-derived vegetation index data products for CONUS (sample data)

description: This is a Near-Real-Time (NRT) Vegetation Index (VI) data set for the Conterminous United States (CONUS) based on MODIS data from Land, Atmosphere Near-real-time Capability for EOS (LANCE), an openly accessible NASA near-real-time EO data repository. The data set includes a variety of commonly used VIs including Normalized Difference Vegetation Index (NDVI), Vegetation Condition Index (VCI), Mean-referenced Vegetation Condition Index (MVCI), Ratio to Median Vegetation Condition Index (RMVCI), and Ratio to Previous-year Vegetation Condition Index (RVCI). LANCE enables the NRT monitoring of U.S. cropland vegetation conditions within 24 hours of observation. Meanwhile, this continuous data set with more than 20 years of vegetation condition observation would be suitable for time series analysis and change detection in many research fields such as agriculture, remote sensing, geographical information science and systems, environmental modeling, and Earth system science.<br>This dataset includes a collection of sample VI data products, including daily NDVI from 6/7/2021 to 6/13/2021, and weekly/biweekly NDVI, VCI, MVCI, RMVCI, RVCI for week 23 in 2021. The complete dataset is free to access through the VegScape web application (https://nassgeodata.gmu.edu/VegScape/) as well as distributed via Web Map Service and Web Coverage Service (https://nassgeo.csiss.gmu.edu/VegScape/devhelp/help.html).
DOI: 10.6084/m9.figshare.19649910
title: Supplementary Material for: Nanomolar responsiveness of marine Phaeobacter inhibens DSM 17395 toward carbohydrates and amino acids

description: Phaeobacter inhibens DSM 17395 is a heterotrophic member of the ubiquitous, marine Roseobacter group and specialized in the aerobic utilization of carbohydrates and amino acids via pathways widespread among roseobacters. The in vivo responsiveness of P. inhibens DSM 17395 was studied with non-adapted cells (succinate-grown), which were exposed to a single pulse (100-0.01 µM) each of N-acetylglucosamine, mannitol, xylose, leucine, phenylalanine or tryptophan (effectors). Responsiveness was then determined by time-resolved transcript analyses (qRT-PCR) of 'degradation' and 'uptake' genes selected based on previously reported substrate-specific proteome profiles. The transcriptional response thresholds were: 50-100 nM for nagK (N-acetylglucosamine kinase), paaA (ring 1,2-phenylacetyl-CoA epoxidase), and kynA (tryptophan 2,3-dioxygenase), 10-50 nM for xylA (xylose isomerase), and around 10 nM for mtlK (mannitol 2-dehydrogenase). A threshold for leucine could not be determined due to the elevated intrinsic presence of leucine in the exometabolome of succinate-grown cells (no effector addition). Notably, the response thresholds for presumptive carbohydrate-binding proteins of ABC-transporters were in the same range or even lower: 10-100 nM for c27930 (N-acetylglucosamine) and even below 10 nM for c13210 (mannitol) and xylF (xylose). These results shed new light on the sensory/regulatory sensitivity of a well-studied roseobacter for recognizing potential substrates at low ambient concentrations and on the concentration threshold below which these might escape biodegradation ('emergent recalcitrance' concept of DOM persistence).
DOI: 10.6084/m9.figshare.20079434.v1
title: Global dataset of stable isotopes in plant water and its sources

description: <br> This is a global dataset of water isotopic composition of plant water and its sources, and it complies data from 112 different articles <br> There are three files included in this package: <br> 1) WATERISOmeta.csv 2) WATERISOplant.csv 3) WATERISOsources.csv <br> These files contain the data included in this publication: <br> Title: Isotopic offsets between bulk plant water and its sources are larger in cool and wet environments <br> Authors list: Javier de la Casa, Adriá Barbeta, Asun Rodriguez-Uña, Lisa Wingate, Jérôme Ogée and Teresa E. Gimeno. <br> Accepted for publication in Hydrology and Earth System Sciences on the 10th June 2022. <br> For an online discussion on this publication see: https://hess.copernicus.org/preprints/hess-2021-333/ <br> Corresponding author: Javier de la Casa, delacasa.snchz@gmail.com <br> Please, read and cite this publication when using this database and contact the corresponding author for further enquires. <br> It is composed of three different databases. One for isotopic composition of water sources (WATERISOsources), other for the plant water (WATERISOplant) and other for the metadata associated to each publication (WATERISOmeta). <br> <br>
DOI: 10.6084/m9.figshare.20453631
title: Supplementary Material for: Evaluating the Effectiveness of a Telehealth Cancer Genetics Program: A <b><i>BRCA</i></b> Pilot Study

description: <b><i>Introduction:</i></b> Ashkenazi Jewish (AJ) individuals face a 1 in 40 (2.5%) risk of having a <i>BRCA</i> mutation, which is 10 times the general population risk. JScreen launched the PEACH <i>BRCA</i> Study, a telehealth-based platform for <i>BRCA</i> education and testing, with the goal of creating an effective model for <i>BRCA</i> testing in low-risk AJ individuals who do not meet national testing criteria. Other goals were to determine the rate of <i>BRCA</i> mutations in this group, to assess the adequacy of screening for the 3 common AJ founder mutations only, and to assess satisfaction with the telehealth model to help inform a national launch of a broader cancer genetic testing program. <b><i>Methods:</i></b> Criteria for participation included those who were AJ, resided in the metro-Atlanta area, were aged 25 and older, and had no personal or close family history of <i>BRCA</i>-related cancers. Pre-test education was provided through a video and written summary, followed by complimentary <i>BRCA1/2</i> sequencing and post-test genetic counseling. Participants responded to pre- and post-test surveys, which assessed knowledge and satisfaction. Those who were not eligible to participate were sent genetic counseling resources and later surveyed. <b><i>Results:</i></b> Five hundred one participants were tested and the results included 4 positives (0.8% positivity rate), 494 negatives, and 3 variants of uncertain significance. Overall satisfaction with the study process was high (96.9/100), knowledge about <i>BRCA</i> was high (97.5% of participants passed a pre-test knowledge quiz), and satisfaction with pre- and post-test education was high (97.9% of participants were satisfied with the pre-test video and written summary, and 99.5% felt that their post-test genetic counseling session was valuable). Many participants expressed interest in receiving broader cancer testing. <b><i>Conclusions:</i></b> The <i>BRCA</i> founder mutation rate in a low-risk AJ population was significantly lower than the previously established AJ rate of 1 in 40. It was also determined that a telehealth model for a cancer genetics program is effective and acceptable to the population tested. This study established interest in broader cancer genetic testing through a telehealth platform and suggested that testing may be successful in the Jewish community at a national level and potentially in other populations, provided that patient education and genetic counseling are adequately incorporated.
DOI: 10.5066/f7jw8c04
title: Seismic data for study of shallow mountain bedrock limits seepage-based headwater climate refugia, Shenandoah National Park, Virginia

description: A combination of long-term daily temperature records and depth to bedrock measurements were used to parametrize one-dimensional models of shallow aquifer vertical heat transport in Shenandoah National Park, VA, USA. Depth to bedrock can directly influence shallow aquifer flow and thermal sensitivity, but is typically ill-defined along the stream corridor in steep mountain catchments. We employed rapid, cost-effective passive seismic measurements to evaluate the variable thickness of the shallow colluvial and alluvial aquifer sediments along a headwater stream supporting coldwater-dependent brook trout (Salvelinus fontinalis) in Shenandoah National Park. The methods are fully documented in the associated journal article, Briggs, M.A., J.W. Lane, C.D. Snyder, E.A. White, Z.C. Johnson, D.L. Nelms, and N.P. Hitt, 2017, Shallow mountain bedrock limits seepage-based headwater climate refugia, Limnologica, http://dx.doi.org/10.1016/j.limno.2017.02.005. This Data Release includes seismic data collected as part of the study.
DOI: 10.18434/t49598
title: Wavenumber Calibration Tables, NIST Standard Reference Database 118