cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.f9qadg
title: Occurrence Download

description: A dataset containing 90780 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Carex chordorrhiza L.f., Carex davalliana Willd. ex Kunth, 1837, Carex digitata L.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 90780 records from 247 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158272-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g5wts6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Orgyia antiqua (Linnaeus, 1758)",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is Argentina",
 "Country is Argentina"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0320275-210914110416597/datasets/export for details.
DOI: 10.25549/pcra-c14-42004
title: Redemption tidings, vol. 8, nos. 1-12, Jan.-Dec. 1932

description: [description english/roman)] Issued monthly. "A full gospel magazine for all believers" -- subtitle. Bound with vol. 7 & 9. Includes Missionary supplement to Redemption tidings in each issue (Jan.-Dec. 1932).
DOI: 10.15468/dl.zuwmeq
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Zealand",
 "TaxonKey is Prunus domestica L."
 ]
}

 The dataset includes 99 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106381-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ptren
title: Occurrence Download

description: A dataset containing 369382 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Carex flava L., Carex elata Turner ex Boott, 1858, Carex flacca Schreb.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 369382 records from 632 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158285-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nj4wvm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Otiorhynchus sulcatus (Fabricius, 1775)",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is Argentina",
 "Country is Argentina"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0320277-210914110416597/datasets/export for details.
DOI: 10.25549/pcra-c14-41978
title: Redemption tidings, vol. 8, nos. 1-12, Jan.-Dec. 1932

description: [description english/roman)] Issued monthly. "A full gospel magazine for all believers" -- subtitle. Bound with vol. 7 & 9. Includes Missionary supplement to Redemption tidings in each issue (Jan.-Dec. 1932).
DOI: 10.15468/dl.5ay72u
title: Occurrence Download

description: A dataset containing 419651 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON((-92.21924 17.2426,-86.45142 17.00689,-86.11743 21.68244,-88.45752 21.94407,-92.35986 21.65028,-92.21924 17.2426))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 1998-2008"
 ]
}

 The dataset includes 419651 records from 361 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0143959-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-42133
title: Redemption tidings, vol. 9, nos. 1-12, Jan.-Dec. 1933

description: [description english/roman)] Issued monthly. "A full gospel magazine for all believers" -- subtitle. Bound with vol. 7-8. Includes Missionary supplement to Redemption tidings in each issue (Jan.-Dec. 1933).
DOI: 10.15468/dl.srnc57
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rubus mercicus Bagn."
 ]
}

 The dataset includes 42 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106398-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.taas49
title: Occurrence Download

description: A dataset containing 89702 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mozambique",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 89702 records from 153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021006-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f3cqn4
title: Occurrence Download

description: A dataset containing 234 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-31.77246 -58.44727,-47.0874 -24.74121,-54.07471 -25.09277,-54.03076 -23.81836,-55.12939 -23.33496,-55.43701 -21.92871,-57.50244 -21.84082,-57.76611 -19.77539,-59.17236 -18.80859,-62.16064 -19.42383,-62.86377 -21.70898,-66.24756 -21.44531,-67.47803 -22.58789,-69.54346 -17.31445,-70.72998 -18.14941,-81.60645 -58.53516,-31.77246 -58.44727))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cassia L."
 ]
}

 The dataset includes 234 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074825-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xdnbs6
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ditassa cordeiroana Fontella"
 ]
}

 The dataset includes 104 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042598-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2tbrhq
title: Occurrence Download

description: A dataset containing 3250 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Micrastur mirandollei (Schlegel, 1862)"
 ]
}

 The dataset includes 3250 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000946-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.speapv
title: Occurrence Download

description: A dataset containing 7566 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Columbina cruziana (Prévost, 1842)"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7566 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042599-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tge4av
title: Occurrence Download

description: A dataset containing 1601 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Buteo platypterus (Vieillot, 1823)",
 "Year 2011-2018"
 ]
}

 The dataset includes 1601 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237243-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uvx5r9
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Limonium corsicum Erben",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 97 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000470-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g52d7u
title: Occurrence Download

description: A dataset containing 2273337 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2000-2020"
 ]
}

 The dataset includes 2273337 records from 1240 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256953-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y9dzax
title: Occurrence Download

description: A dataset containing 50743 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Cambodia, Malaysia, Indonesia, Thailand, Singapore, Philippines, Viet Nam, Myanmar, Lao People’s Democratic Republic, Timor-Leste, Brunei Darussalam)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Copsychus saularis (Linnaeus, 1758)",
 "Year 1980-2020"
 ]
}

 The dataset includes 50743 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148445-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q6toa3
title: Occurrence Download

description: A dataset containing 2502603 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pica Brisson, 1760"
 ]
}

 The dataset includes 2502603 records from 992 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042599-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pcexpa
title: Occurrence Download

description: A dataset containing 9394 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Echiichthys vipera (Cuvier, 1829)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen, Material sample)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 9394 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002269-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.thc73j
title: Occurrence Download

description: A dataset containing 2341 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles plumbeus Stephens, 1828"
 ]
}

 The dataset includes 2341 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002270-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8353229
title: FRACAS: FRench Annotated Corpus of Attribution relations in newS

description: A human-annotated corpus for French quotation extraction containing 1676 newswire texts with 10 965 annotated attribution relations (quotes attributed to its speaker).


Data: 1676 newswire texts in French from Reuters annotated with 10 965 attribution relations


Date: April 1995 to April 1996


Data structure:


{


"text": text of the newswire,


"entities": a list of each entity in the following format ["id": unique_id, "text": text of entity, "label": entity label, "gender": gender (if labelled), "char_span": a list of character index span]


"relations": a list of each relation in the following format [id of relation, label of relation, id of first entity, id of second entity


}


Labels:



	
Entities:
	

		
Quotation (Direct, Indirect or Mixed)
		
Speaker (Agent, Organization, Group of People, Source Pronoun)
		
Cue
	
	
	
Attributes:
	

		
Speaker Gender (Male, Female, Mixed, Unknown, Other)
	
	
	
Relations:
	

		
Speaker Quoted in Quotation
		
Cue Indicates Quotation
		
Source Pronoun Refers to Speaker
DOI: 10.15468/dl.dppyjh
title: Occurrence Download

description: A dataset containing 3463 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Engraulis encrasicolus (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen, Material sample)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 3463 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002271-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15222673
title: Daily Averaged Accumulation Mode Particle Number Concentrations (N100) from 35 Stations (2003-2019)

description: This dataset contains the number concentrations of particles with dry diameters larger than 100 nm (N100) calculated from particle number size distribution measurements. The dataset includes varying lengths of daily averaged data from 35 measurement stations worldwide, collected during the period from 2003 to 2019.

The dataset was utilized in the study titled “Global fields of daily accumulation-mode particle number concentrations using in situ observations, reanalysis data, and machine learning” to train and validate machine learning models. For more detailed information on the dataset, including the specific measurement periods, data processing methods, and station details, please refer to the publication.
DOI: 10.5281/zenodo.15222674
title: Daily Averaged Accumulation Mode Particle Number Concentrations (N100) from 35 Stations (2003-2019)

description: This dataset contains the number concentrations of particles with dry diameters larger than 100 nm (N100) calculated from particle number size distribution measurements. The dataset includes varying lengths of daily averaged data from 35 measurement stations worldwide, collected during the period from 2003 to 2019.

The dataset was utilized in the study titled “Global fields of daily accumulation-mode particle number concentrations using in situ observations, reanalysis data, and machine learning” to train and validate machine learning models. For more detailed information on the dataset, including the specific measurement periods, data processing methods, and station details, please refer to the publication.
DOI: 10.23728/b2share.1b2f8f70188c468fa32b7838b79d4aaf
title: srvbrktest-20250416
DOI: 10.15468/dl.sjkpj2
title: Occurrence Download

description: A dataset containing 428 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epigonus constanciae (Giglioli, 1880)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen, Material sample)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 428 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002272-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15124018
title: Annotated textual dataset PV600 of perovskite bandgaps for information extraction from literature

description: The data generation details and computational framework for this dataset can be found in the manuscript

Sipilä, M., Mehryary, F., Pyysalo, S., Ginter, F. & Todorović, M. (2025) Annotated textual dataset PV600 of perovskite bandgaps for information extraction from literature.

This dataset contains 600 annotated text snippets about five perovskite materials bandgaps. The dataset is intended to be used in evaluating the information extraction methods for materials science. The text snippets were extracted from open access articles downloaded using query word “perovskite" from five publishing sources: Elsevier, Springer, Royal Society of Chemistry, Core API and arXiV. The dataset comprises five materials, MAPI, FAPI, MAPB, CsPbI3 and CsPbBr3. In total, there are 227 annotated bandgap values derived from 188 snippets (see article above for details). The annotated dataset is made available in two formats: the csv-table format and in the brat annotation format.
DOI: 10.5281/zenodo.15124019
title: Annotated textual dataset PV600 of perovskite bandgaps for information extraction from literature

description: The data generation details and computational framework for this dataset can be found in the manuscript

Sipilä, M., Mehryary, F., Pyysalo, S., Ginter, F. & Todorović, M. (2025) Annotated textual dataset PV600 of perovskite bandgaps for information extraction from literature.

This dataset contains 600 annotated text snippets about five perovskite materials bandgaps. The dataset is intended to be used in evaluating the information extraction methods for materials science. The text snippets were extracted from open access articles downloaded using query word “perovskite" from five publishing sources: Elsevier, Springer, Royal Society of Chemistry, Core API and arXiV. The dataset comprises five materials, MAPI, FAPI, MAPB, CsPbI3 and CsPbBr3. In total, there are 227 annotated bandgap values derived from 188 snippets (see article above for details). The annotated dataset is made available in two formats: the csv-table format and in the brat annotation format.
DOI: 10.34740/kaggle/dsv/11433509
title: Full TMDB Movies Dataset 2024 (1M Movies)
DOI: 10.5281/zenodo.13918008
title: Weekly supervised Multilingual Data Set to train Named Entity Recognition for Symptom Extraction

description: Data Sets were generated using the Weakly Supervised NER pipeline (https://github.com/HUMADEX/Weekly-Supervised-NER-pipline) to train the symptom extraction NER models. 

Supported Languages and dataset locations for the specific language:

    English (base language): https://huggingface.co/HUMADEX/english_medical_ner    German: https://huggingface.co/HUMADEX/german_medical_ner    Italian: https://huggingface.co/HUMADEX/italian_medical_ner    Spanish: https://huggingface.co/HUMADEX/spanish_medical_ner    Greek: https://huggingface.co/HUMADEX/german_medical_ner    Slovenian: https://huggingface.co/HUMADEX/slovenian_medical_ner    Polish: https://huggingface.co/HUMADEX/polish_medical_ner    Portuguese: https://huggingface.co/HUMADEX/portugese_medical_ner

 

Dataset Building 



Data Integration and Preprocessing

Data Cleaning

Annotation with Stanza's i2b2 Clinical Model 

Translation into the targeted language

Word Alignment 

Data Augmentation 


AcknowledgementThis dataset had been created as part of joint research of HUMADEX research group (https://www.linkedin.com/company/101563689/) and has received funding by the European Union Horizon Europe Research and Innovation Program project SMILE (grant number 101080923) and Marie Skłodowska-Curie Actions (MSCA) Doctoral Networks, project BosomShield ((rant number 101073222). Responsibility for the information and views expressed herein lies entirely with the authors.

Authors:dr. Izidor Mlakar, Rigona Sallauka, dr. Umut Arioz, dr. Matej Rojc

Please cite as:

Article title: Weakly-Supervised Multilingual Medical NER For Symptom Extraction For Low-Resource LanguagesDoi: 10.20944/preprints202504.1356.v1Website: https://www.preprints.org/manuscript/202504.1356/v1