cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c55t3gc06
title: MassIVE MSV000097327 - Integrative Multi-omics Reveals CUL4B Regulation of Macrophage Pyroptosis and Innate Defense to Staphylococcus aureus
title: The bacterial pathogen Staphylococcus aureus (SA) causes a broad range of invasive human diseases, with its impact further exacerbated by acquired antibiotic resistance. Macrophages play a pivotal role in innate immunity, significantly influencing SA infection outcomes. However, despite advances in understanding SA-macrophage interactions, key questions remain due to the multifaceted immune evasion strategies of pathogens. Using an integrative multi-omics approach and system-level analytics, we investigated the macrophage response in SA infection with a well-characterized isolate of community-acquired methicillin-resistant S. aureus (MRSA). Our studies identified E3 ubiquitin ligase Cullin 4B (CUL4B) as a key regulatory factor at the nexus of the host innate immune response. To assess its function, we used CRISPR to delete CUL4B in the human macrophage cell line THP-1 and subjected both wild-type (WT) and mutant macrophage to MRSA challenge. Loss of CUL4B was associated with enhanced intracellular bacterial killing, reduced macrophage cell death, decreased caspase-1 activation, and lower IL-1beta production, suggesting this E3 ubiquitin ligase played a role in inflammasome regulation. In a murine MRSA pneumonia model, Cul4b-deficient mice exhibited improved pulmonary bacterial clearance and reduced systemic spread of the pathogen. Whole-lung and serum proteomic analyses revealed increased expression of antimicrobial host proteins and decreased SA-induced inflammatory tissue damage in Cul4b-deficient mice compared to WT controls. These findings highlight CUL4B as a critical modulator of the host response to MRSA infection and reveal potential targets for host-directed therapeutics to improve clinical outcomes against this leading pathogen.
DOI: 10.15468/dl.6t9pvh
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Caracterización ecológica Lisama 2018 y 2020 - Tejidos de peces y aves"
 ]
}

 The dataset includes 131 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008920-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p9b6yybu
title: Fish distribution and tidal currents in the Upper San Francisco Estuary (ver. 3.0, March 2025)

description: This data release includes field data for fishes sampled through mid-water trawls and otter trawl methods from Suisun Bay, California to the mouth of the Sacramento River. These data were collected in August through September, 2022; October of 2023; and in September, 2024 as a part of a multi-year study of Suisun Dredging and Fish Distribution (SDFD). This data release includes quantitative data on collected fish taxa and environmental conditions focused on habitat differences between shipping channels and shoals. Sampling was done using short duration (~15 minute) trawls alongside associated water quality sample and Acoustic Doppler Current Profiler (ADCP) data collected at variable locations, depths, times, and currents.

First release: May 26, 2023
Revised: March 2024 (version 2.0)
Revised: March 2025 (version 3.0)
DOI: 10.5519/qd.3try6coz
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5963189 records)
DOI: 10.15468/dl.evtxzj
title: Occurrence Download

description: A dataset containing 897 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Otiorhynchus tenebricosus (Herbst, 1784)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 897 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008924-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rs9zfq
title: Occurrence Download

description: A dataset containing 685 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "Geometry POLYGON((-89.83505 47.92156,-97.46926 49.02122,-97.37125 43.01108,-92.20205 43.07952,-92.12573 46.76993,-89.83505 47.92156))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cirsium vulgare (Savi) Ten."
 ]
}

 The dataset includes 685 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008927-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15026451
title: ELRAP Sketchfab Questionnaire Responses

description: Responses to a questionnaire administered to Arabic-speaking Jordanians regarding their experiences with the non-linear archaeological narrative on the Sketchfab page of the Edom Lowlands Regional Archaeology Project, translated into English
DOI: 10.5281/zenodo.15026452
title: ELRAP Sketchfab Questionnaire Responses

description: Responses to a questionnaire administered to Arabic-speaking Jordanians regarding their experiences with the non-linear archaeological narrative on the Sketchfab page of the Edom Lowlands Regional Archaeology Project, translated into English
DOI: 10.5281/zenodo.15018516
title: CoBRA_re_identification_youngstock

description: This dataset was constructed within the CoBRA project (Cow Behaviour Recording and Analysis) and contains 11.438 animal segments of Holstein cattle which are sorted according to their behaviour (standing, lying left or lying right) and identity. 

Each image file is accompanied by a .json file containing metadata: identity, behaviour, image filename and spine angle. The spine angle describes the orientation (in degrees) of the animal's spine, evaluated from the camera's perspective. 

Additionally, the file "id_stratification.csv" contains a stratification of the animal identities into 6 groups, based on their main colour (red or black) and the amount of white in the coat.  For black Holstein animals, animals with less than 20% white in their coat are considered black (b), animals which have between 20% and 80% white in their coat are considered black & white (bw) and animals which have more than 80% white in their coat are considered white & black (wb). Analogously, red Holstein animals are categorised into red (r), red & white (rw) and white & red (wr) animals.
DOI: 10.5281/zenodo.15018518
title: CoBRA_re_identification_youngstock

description: This dataset was constructed within the CoBRA project (Cow Behaviour Recording and Analysis) and contains 11.438 animal segments of Holstein cattle which are sorted according to their behaviour (standing, lying left or lying right) and identity. 

Each image file is accompanied by a .json file containing metadata: identity, behaviour, image filename and spine angle. The spine angle describes the orientation (in degrees) of the animal's spine, evaluated from the camera's perspective. 

Additionally, the file "id_stratification.csv" contains a stratification of the animal identities into 6 groups, based on their main colour (red or black) and the amount of white in the coat.  For black Holstein animals, animals with less than 20% white in their coat are considered black (b), animals which have between 20% and 80% white in their coat are considered black & white (bw) and animals which have more than 80% white in their coat are considered white & black (wb). Analogously, red Holstein animals are categorised into red (r), red & white (rw) and white & red (wr) animals.
DOI: 10.15468/dl.4yuvfr
title: Occurrence Download

description: A dataset containing 45785 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Campanula rapunculoides L."
 ]
}

 The dataset includes 45785 records from 243 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008930-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15026432
title: Plastic Fishing Gear Losses in the Southwestern Waters of Vietnam – Survey based Performance and Perception of Fishermen
DOI: 10.5281/zenodo.15026433
title: Plastic Fishing Gear Losses in the Southwestern Waters of Vietnam – Survey based Performance and Perception of Fishermen
DOI: 10.5066/p1f7snuj
title: Development and efficiency of less intrusive survey methodologies for Santa Ana sucker (Pantosteus santaanae) monitoring

description: The Santa Ana Sucker (Pantosteus santaanae) is a federally threatened species endemic to the Santa Ana, San Gabriel, and Los Angeles Rivers in southern California. Seasonal limitations on conventional sampling and inconsistencies in survey methodologies have led to an incomplete understanding of Santa Ana Sucker population dynamics. Therefore, alternative sampling methods that are not limited by these constraints are needed to help fill important knowledge gaps in Santa Ana Sucker biology and life history. This data release documents controlled experiments conducted within an artificial stream (greenbelt) to test the efficacy of stationary cameras, active cameras, and Passive Integrated Transponder (PIT) tagging survey methodologies for detecting Santa Ana Sucker. The goal of this study is to develop less intrusive surveying methodology to quantify Santa Ana Sucker population structure.
DOI: 10.15468/dl.3jtwcr
title: Occurrence Download

description: A dataset containing 37262 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Styphnolobium japonicum)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 37262 records from 251 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059441-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-6625
title: Garage, lecture room, etc., Southern California, 1928

description: 4 photographs of lecture room, garage, office, and medical examination room, Southern California, 1928. "Subject: Garage, lecture room, etc; Client: yellow Cab Co.; Number of prints: 1 ea[ch]; Size: 8x10; Year: 1928; Job: 4-4-26" -- on envelope.
DOI: 10.25549/whit-c170-7151
title: Street intersections and views around 6th Street and Vermont Avenue, Los Angeles, CA, 1928

description: 10 photographs of street intersections and views around 6th Street and Vermont Avenue, Los Angeles, CA, 1928. "Subject: street intersections & views around, 6th & Vermont; Client: Metcalf & Ryan, J.P. Loeb - Loeb-Walker & Loeb, att[orne]y's; Year: 1928; Job: 8-20-75" -- on envelope.
DOI: 10.15468/dl.91va90
title: Occurrence Download

description: A dataset containing 74752 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The mammals collection (ZM) of the Muséum national d'Histoire naturelle (MNHN - Paris)"
 ]
}

 The dataset includes 74752 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000104-150512124619364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-7162
title: 3843-3853 West 27th Street, Los Angeles, CA, 1928

description: Photograph of exterior of 3843-3853 West 27th Street, Los Angeles, CA, 1928. "Subject: 3843-53 27th St[reet]; Client: O'Connor; Year: 1928; Job: 8-23-88" -- on envelope.
DOI: 10.25549/whit-c170-6610
title: Offices, Yellow Cab Co., Southern California, 1928

description: 13 photographs of men and women in offices, Southern California, 1928. "Subject: Offices; Client: Yellow Cab Co.; Number of prints: 1-ea[ch]; Size: 8x10; Finish: gl[ossy]; Year: 1928; Job: 3-31-144-A" -- on envleope.
DOI: 10.15468/dl.32dr3k
title: Occurrence Download

description: A dataset containing 783 species occurrences available in GBIF matching the query:
{
 "GenusKey" : [
 "is Pilgerodendron Florin"
 ]
}

 The dataset includes 783 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004305-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lnihnv
title: Occurrence Download

description: A dataset containing 1113 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus castanea Née"
 ]
}

 The dataset includes 1113 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000104-150527152214153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h8dpxj
title: Occurrence Download

description: A dataset containing 223191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendrocygna javanica (Horsfield, 1821)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 223191 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004293-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-6493
title: 4322 Sutro Avenue, Leimert Park, Los Angeles, CA, 1928

description: 3 photographs of 4322 Sutro Avenue, Leimert Park, Los Angeles, CA, 1928. "Subject: Home at 4322 Sutro St[reet], Leimert Park; Client: Mrs. Truble, 1727 Browning, Ver. 3166; Number of Prints: 1 ea[ch]; Size: 8x10; gl[ossy] double [ilg] for [ilg]; Year: 1928; Job: 3-20-94" -- on envelope.
DOI: 10.15468/dl.ayhs0q
title: Occurrence Download

description: A dataset containing 416 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Colophospermum mopane (J.Kirk ex Benth.) J.Léonard"
 ]
}

 The dataset includes 416 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000104-150721130643939/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-6475
title: Planting Easter Lillies, Southern California, 1928

description: 4 photographs of men and women planting Easter Lillies, Southern California, 1928. "Subject: Planting Easter Lillies; Client: Calif[ornia] Botanic Garden; Number of Prints: 2-ea[ch]; Size: 8x10; Finish: gl[ossy]; Year: 1928; Job: 3-20-90" -- on envelope.
DOI: 10.15468/dl.csrhdc
title: Occurrence Download

description: A dataset containing 41830 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sagittaria sagittifolia L."
 ]
}

 The dataset includes 41830 records from 221 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000104-150805223722583/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-44361
title: Jimmy Haigsly and wife publicity for Air Races, Southern California, 1933

description: 4 photographs of Jimmy Haigsly with wife, men standing with airplane, Southern California, 1933. "Subject: Jimmy Haigsly & wife publicity for Air Races; Client: National Air Races Inc., Bud Davis, Ambassador Hotel, room 165; Original Print Order: 1 ea[ch]; Re-Order: 1 #3, 1 #1; Size: 8x10; Finish: gl[ossy]; Year: 1933; Job: 34-8-30" -- on envelope front. "Operator's Report Name: Joe; 4 Original Photographs - Size: 8x10; Amount: 6.00; 35 Miles: Transportation at 7c: 2.45; 2 1/2 Hours: Time: 5.00; Extra Charges: Cliff Henderson" -- on envelope back.
DOI: 10.15468/dl.13ji91
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Flaveria campestris J.R.Johnst.",
 "Country is United States of America"
 ]
}

 The dataset includes 87 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000104-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-6764
title: Lucille Winters at Hollywood Store, Southern California, 1928

description: 3 photographs of Lucille Winters in front of building, Southern California, 1928. "Subject: "Lucille Winters at Hollywood Store..; Agency: Uhlenhart; Client: Bershon Tire Co; Number of prints: 2-ea[ch]; Size: 8x10; Finish: gl[ossy]; Year: 1928; Job: 6-19-98" -- on envelope.
DOI: 10.15468/dl.bsfjkv
title: Occurrence Download

description: A dataset containing 524 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Padina boryana Thivy, 1966"
 ]
}

 The dataset includes 524 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000104-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-44397
title: Lita Ray and Cliff Henderson putting Air Races stickers on car, Southern California, 1933

description: 3 photographs of man and woman putting sticker on an automobile and 1 photograph of man and woman posing with an automobile, Southern California, 1933. "Subject: Lita Ray and Cliff Henderson, air race stickers on car; Client: Nat[ional] Air Races; Job 35-20-124; Year: 1933" -- on envelope front.
DOI: 10.25549/whit-c170-6784
title: Car at beach - Helen Lambert, Southern California, 1928

description: 12 photographs of Helen Lambert and man on beach, Southern California, 1928. "Subject: Car at beach - Helen Lambert.; Agency: Uhlenhart; Client: Bershon Tire Co.; Number: of prints: 1-ea[ch], 2, 1; Size: 8x10; Finish: gl[ossy]; Year: 1928; Job: 6-23-127" -- on envelope.
DOI: 10.15468/dl.bxs0we
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 3) Minerals, and calcareous and siliceous fossil residues from DSDP Hole 93-603"
 ]
}

 The dataset includes 84 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000104-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-6512
title: City terrace "build your own" home for Mr. Wheeler, Southern California, 1928

description: 6 photographs of men and woman and 1 photograph of signage, Southern California, 1928. "Subject: City terrace 'build your own' home for Mr. Wheeler, 5068 Alhambra B[ou]l[e]v[ar]d; Client: Walter H. Leimert; Number of Prints: 2-ea[ch], 2 ea[ch], 1 [each]; Size: 8x10; Finish: gl[ossy]; Mounted: 1 on #10; Year: 1928; Job: 3-21-96" -- on envelope.
DOI: 10.25549/whit-c170-6488
title: 416 & 418 Pine Avenue, Maywood, CA, 1928

description: Photograph of 416 & 418 Pine Avenue, Maywood, CA, 1928. "Subject: 416-18 Pine, Maywood; Client: The Frank Meline Co., #614; Number of Prints: 1 e[a]ch; Size: 8x10; Finish: gloss[y]; Year: 1928; Job: 3-20-92" -- on envelope.
DOI: 10.15468/dl.7o7o3q
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mertensophryne micranotis (Loveridge, 1925)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 72 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000104-170627171947987/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-6511
title: City terrace "build your own" home for Mr. Wheeler, Southern California, 1928

description: 6 photographs of men and woman and 1 photograph of signage, Southern California, 1928. "Subject: City terrace 'build your own' home for Mr. Wheeler, 5068 Alhambra B[ou]l[e]v[ar]d; Client: Walter H. Leimert; Number of Prints: 2-ea[ch], 2 ea[ch], 1 [each]; Size: 8x10; Finish: gl[ossy]; Mounted: 1 on #10; Year: 1928; Job: 3-21-96" -- on envelope.
DOI: 10.15468/dl.t3c7o5
title: Occurrence Download

description: A dataset containing 1389 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Reithrodontomys montanus (Baird, 1855)",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1389 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000917-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-6494
title: 4322 Sutro Avenue, Leimert Park, Los Angeles, CA, 1928

description: 3 photographs of 4322 Sutro Avenue, Leimert Park, Los Angeles, CA, 1928. "Subject: Home at 4322 Sutro St[reet], Leimert Park; Client: Mrs. Truble, 1727 Browning, Ver. 3166; Number of Prints: 1 ea[ch]; Size: 8x10; gl[ossy] double [ilg] for [ilg]; Year: 1928; Job: 3-20-94" -- on envelope.
DOI: 10.25549/whit-c170-35520
title: Wrecked Ford roadster, 1W4489, owner Richard Moyer, at Master Service Garage, 811 Whittier, Southern California, 1931

description: 3 photographs of wrecked Ford automobile, Southern California, 1931. "Subject: Wrecked Ford Roadster 1W4489, Owner Richard Moyer, at Master Service Garage. 811 Whittier; Client: Union Ind[ustry] Co., Holscher, 724 So[uth] Spring St[reet]; Original Print Order: 3 ea[ch]; Size: 8x10; Finish: gl[ossy]; Year: 1931; Kpn: 5-19-128" --on envelope front. "Operator's Report (Name): Geo[rge]; 3 Original Photographs-- Size: 8x10; Amount: 3.00, 1.00; 1 1/4 Ounces of Flash Powder @ 85 c[ents]; Extra Charges: Holscher" --on envelope back.
DOI: 10.15468/dl.ayx3pc
title: Occurrence Download

description: A dataset containing 5201 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myiodynastes luteiventris P.L.Sclater, 1859",
 "Country is Mexico",
 "Geometry POLYGON((-109.6875 22.431340,-111.796875 24.206889,-112.851562 26.431228,-114.433593 27.527758,-114.257812 28.613459,-116.894531 31.952162,-114.785156 32.398515,-107.929687 31.353636,-105.996093 30.902224,-103.183593 28.921631,-102.304687 29.840643,-97.734375 25.641526,-96.503906 19.973348,-92.8125 18.646245,-89.648437 21.289374,-86.484375 20.797201,-88.945312 17.978733,-90.878906 17.308687,-90.527343 16.299051,-91.933593 15.114552,-93.867187 15.623036,-97.03125 15.284185,-102.480468 17.644022,-105.292968 20.468189,-107.226562 23.725011,-109.160156 25.799891,-111.269531 27.994401,-113.378906 30.751277,-114.785156 30.902224,-112.5 27.839076,-111.093749 25.641526,-109.511718 23.402764,-109.6875 22.431340))"
 ]
}

 The dataset includes 5201 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000104-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-44695
title: Vis-O-Matic slides, Standard Oil Co., Southern California, 1935

description: 19 photographs of men, women, automobiles, and bathroom at service station, Southern California, 1935. "Subject: Visomatic slides, Reel 2; Client: St[nd]a[rd] Oil Co; Classifications: see also D 8x10; Year: 1935; Job: 45-12-105-E" -- on envelope front. "6 1/4x9" -- on envelope back.