cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/5xtt3d9btm.2
title: A study of a Chromosome-level Genome Assembly and the Origin of Neo-Y Chromosome to the X1X2Y System in the Male Barred knifejaw Oplegnathus fasciatus. Xiao et al.

description: The barred knifejaw, Oplegnathus fasciatus (Teleostei: Centrarchiformes Oplegnathidae), is an important species in marine cage culture and fish stocking for marine ranching in East Asia. The males of Oplegnathidae (O. fasciatus and O. punctatus) species are characterized by an X1X2Y system with a neo-Y chromosome based on male karyotype analyses. Release of the chromosome-level reference genome of female O. fasciatus has facilitated insights into the origin of the X1X2Y system of male O. fasciatus. In the present study, we applied PacBio long-read sequencing and high-throughput chromosome interaction mapping (Hi-C) to assemble a chromosome-level genome of male O. fasciatus. A highly contiguous genome with a size of 795 Mb, 2,295 contigs, and a contig N50 of 2.13 Mb was obtained. The 1,355 ordered contigs combined with the draft genome were further assembled into 23 chromosomes approximately 762 Mb in length with a contig and scaffold N50 length of 2.18 and 32.43 Mb, respectively. A large neo-chromosome (Ch9) of 94.2 Mb was assembled from 444 contigs, and found to be more than three times larger than the rest chromosomes in O. fasciatus genome. In addition, 63.1 Mb of the Ch9 sequences of male O. fasciatus had high identity (~99.0%) to the Ch8 and Ch10 sequences of female O. fasciatus based on a whole-genome synteny analysis, showing that the neo-Y chromosome shared significant homology with Ch8 and Ch10 based on male/female genome comparison. Significant fission tracks at the terminal point of the chromosomes were also identified between Ch9 and Ch8/Ch10 using synteny analyses, which showed chromosome rearrangements events had happened in the neo-chromosome Ch9. Our present results accurately demonstrated that the X1X2Y system of male O. fasciatus originated from the fusions of the non-homologous chromosomes Ch8 and Ch10. According to the synteny analyses and previous karyotypes results, which characterized acrocentric chromosomes, we suggested that a centric fusion of acrocentric chromosomes Ch8 and Ch10 was responsible for the formation of the X1X2Y system of male O. fasciatus.
DOI: 10.17632/j78bpdwz5k.2
title: Innovation mindset of electrical manufacturing employees in Indonesia

description: This data is tabulated raw data using the SPSS program from a questionnaire (from 338 respondents) measuring each variable (innovation mindset, knowledge management, organizational learning, organizational culture, organizational forgetting and competitive intelligence).
DOI: 10.3886/e118521v1
title: The case of the El Encín atomic garden, Madrid (Spain)

description: The proposed case study is the atomic garden located in the Finca El Encín (Madrid). Its biogeographical features have made this a singular and unique space since it was created over 60 years ago. The results obtained for the case study endorse a method using an unmanned aerial platform capable of carrying sensors to obtain point clouds and aerial images, in addition to point clouds and images captured with a terrestrial laser scanner.
DOI: 10.5281/zenodo.3727775
title: Princeton Handbook for Reproducible Neuroimaging: Sample Output

description: This archive contains sample output files for the sample data accompanying the Princeton Handbook for Reproducible Neuroimaging. Outputs include the NIfTI images converted using HeuDiConv (v0.5.dev1) and organized according to the BIDS standard, quality control evaluation using MRIQC (v0.10.4), data preprocessed using fMRIPrep (v1.4.1rc1), and other auxiliary files. All outputs were created according to the procedures outlined in the handbook, and are intended to serve as a didactic reference for use with the handbook. The sample data from which the outputs are derived were acquired (with informed consent) using the ReproIn naming convention on a Siemens Skyra 3T MRI scanner. The sample data include a T1-weighted anatomical image, four functional runs with the “prettymouth” spoken story stimulus, and one functional run with a block design emotional faces task, as well as auxiliary scans (e.g., scout, soundcheck). The “prettymouth” story stimulus created by Yeshurun et al., 2017 and is available as part of the Narratives collection, and the emotional faces task is similar to Chai et al., 2015. The brain data are contributed by author S.A.N. and are authorized for non-anonymized distribution.
DOI: 10.5281/zenodo.3731107
title: Raw diffraction data for structure of SARS-CoV-2 main protease with NCL-00025058 (ID: mpro-x0978 / PDB: 5RG2)

description: Raw diffraction data for mpro-x0978 / PDB ID 5RG2 (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RG2) - SARS-CoV-2 main protease in complex with NCL-00025058 (SMILES:C[C@H](O)[C@H](NC(=O)C)C(=O)NCC#CBr) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
DOI: 10.5281/zenodo.3731108
title: Raw diffraction data for structure of SARS-CoV-2 main protease with NCL-00025058 (ID: mpro-x0978 / PDB: 5RG2)

description: Raw diffraction data for mpro-x0978 / PDB ID 5RG2 (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RG2) - SARS-CoV-2 main protease in complex with NCL-00025058 (SMILES:C[C@H](O)[C@H](NC(=O)C)C(=O)NCC#CBr) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
DOI: 10.17632/ndymx9b8yk.1
title: Availability of substances for use in personal vaporisers on three online cryptomarkets

description: This page contains the dataset extracted from various online cryptomarket on the darknet using the TOR browser
DOI: 10.3886/e118521
title: The case of the El Encín atomic garden, Madrid (Spain)

description: The proposed case study is the atomic garden located in the Finca El Encín (Madrid). Its biogeographical features have made this a singular and unique space since it was created over 60 years ago. The results obtained for the case study endorse a method using an unmanned aerial platform capable of carrying sensors to obtain point clouds and aerial images, in addition to point clouds and images captured with a terrestrial laser scanner.
DOI: 10.5281/zenodo.3728248
title: COSP and PRP output used in sciadv.aaz6433

description: COSP and PRP output used in sciadv.aaz6433
DOI: 10.5281/zenodo.3728249
title: COSP and PRP output used in sciadv.aaz6433

description: COSP and PRP output used in sciadv.aaz6433
DOI: 10.17632/3csr652p9y.2
title: Data on Fundus Images for Vessels Segmentation, Detection of Hypertensive Retinopathy, Diabetic Retinopathy and Papilledema

description: We presents a dataset of 100 fundus digital images of retina. The retinal images are taken from Armed Forces Institute of Ophthalmology (AFIO), Rawalpindi, Pakistan and annotated with the help of four expert ophthalmologists for the purpose of computer aided diagnosis of hypertensive retinopaty, diabetic retinopathy and papilledema. This dataset contains retinal blood vessels network, segmented artery/ vein network to calculate Arteriovenous Ratio (AVR), annotation of Optic Nerve Head (ONH) and various retinal abnormalities such as hard exudates (HE) and cotton wool spots. The dataset is valuable for those researchers who are developing automated systems for vessels segmentation, artery/ vein classification, diagnosis of hypertensive retinopathy, diabetic retinopathy and papilledema. Please cite the following article if you want to use this dataset: Muhammad Usman Akram, Shahzad Akbar, Taimur Hassan, Sajid Gul Khawaja, Ubaidullah Yasin, Imran Basit, "Data on fundus images for vessels segmentation, detection of hypertensive retinopathy, diabetic retinopathy and papilledema", Data in Brief, Volume 29, 105282, ISSN 2352-3409, 2020.
DOI: 10.17632/m3nhb77hbn.1
title: Data supporting exosome laden oxygen releasing antioxidant and antibacterial cryogel wound dressing OxOBand alleviate diabetic and infectious wound healing

description: Normalised wound area showing migration of NIH3T3 cells upon exosome treatment. Migration rate showing enhanced migration of NIH3T3 cells upon exosome treatment. MTT assay of HaCaT cells on PUAO and PUAO-CPO scaffolds. MTT assay of NIH3T3 cells on PUAO and PUAO-CPO scaffolds. MTT assay of ADSCs cells on PUAO and PUAO-CPO scaffolds
DOI: 10.5281/zenodo.3731494
title: Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102972 (ID: mpro-x1380 / PDB: 5RFO)

description: Raw diffraction data for mpro-x1380 / PDB ID 5RFO (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFO) - SARS-CoV-2 main protease in complex with PCM-0102972 (SMILES:ClCC(=O)N1CCC(CC1)C(=O)N2CCCCC2) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
DOI: 10.5281/zenodo.3731495
title: Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102972 (ID: mpro-x1380 / PDB: 5RFO)

description: Raw diffraction data for mpro-x1380 / PDB ID 5RFO (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFO) - SARS-CoV-2 main protease in complex with PCM-0102972 (SMILES:ClCC(=O)N1CCC(CC1)C(=O)N2CCCCC2) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
DOI: 10.5281/zenodo.3731365
title: Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102704 (ID: mpro-x1308 / PDB: 5RFF)

description: Raw diffraction data for mpro-x1308 / PDB ID 5RFF (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFF) - SARS-CoV-2 main protease in complex with PCM-0102704 (SMILES:ClCC(=O)N1CCN(CC1)S(=O)(=O)c2ccc(Cl)cc2) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
DOI: 10.5281/zenodo.3731366
title: Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102704 (ID: mpro-x1308 / PDB: 5RFF)

description: Raw diffraction data for mpro-x1308 / PDB ID 5RFF (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFF) - SARS-CoV-2 main protease in complex with PCM-0102704 (SMILES:ClCC(=O)N1CCN(CC1)S(=O)(=O)c2ccc(Cl)cc2) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
DOI: 10.25387/g3.11301932
title: Supplemental Material for Bronski et al., 2020

description: Table S1 reports a regression analysis for predictors of scaffold NG50. Table S2 reports a regression analysis for predictors of the percentage of the estimated genome size that was assembled. Figure S1 contains NG graphs showing the distribution of scaffold lengths for 23 ​montium assemblies. Figure S2 contains additional dotplots.
DOI: 10.25387/g3.11301932.v1
title: Supplemental Material for Bronski et al., 2020

description: Table S1 reports a regression analysis for predictors of scaffold NG50. Table S2 reports a regression analysis for predictors of the percentage of the estimated genome size that was assembled. Figure S1 contains NG graphs showing the distribution of scaffold lengths for 23 ​montium assemblies. Figure S2 contains additional dotplots.
DOI: 10.5281/zenodo.3730443
title: Wikidata Dump

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.5281/zenodo.3731538
title: Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102254 (ID: mpro-x1425 / PDB: 5RFX)

description: Raw diffraction data for mpro-x1425 / PDB ID 5RFX (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFX) - SARS-CoV-2 main protease in complex with PCM-0102254 (SMILES:COc1ccc(cc1)N2CCN(CC2)C(=O)CCl) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
DOI: 10.5281/zenodo.3731539
title: Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102254 (ID: mpro-x1425 / PDB: 5RFX)

description: Raw diffraction data for mpro-x1425 / PDB ID 5RFX (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFX) - SARS-CoV-2 main protease in complex with PCM-0102254 (SMILES:COc1ccc(cc1)N2CCN(CC2)C(=O)CCl) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
DOI: 10.15468/ztuxka
title: Corrections to the classification of the Neotropical ant-like stone beetles misplaced in Euconnus Thomson (Coleoptera, Staphylinidae, Scydmaeninae). Part 1.

description: This dataset contains the digitized treatments in Plazi based on the original journal article Jałoszyński, Paweł (2020): Corrections to the classification of the Neotropical ant-like stone beetles misplaced in Euconnus Thomson (Coleoptera, Staphylinidae, Scydmaeninae). Part 1. Zootaxa 4755 (2): 251-270, DOI: 10.11646/zootaxa.4755.2.3
DOI: 10.5281/zenodo.3730442
title: Wikidata Dump

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.5281/zenodo.3730444
title: Wikidata Dump

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.5281/zenodo.3730445
title: Wikidata Dump

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.5281/zenodo.3731369
title: Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102372 (ID: mpro-x1311 / PDB: 5RFG)

description: Raw diffraction data for mpro-x1311 / PDB ID 5RFG (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFG) - SARS-CoV-2 main protease in complex with PCM-0102372 (SMILES:ClCC(=O)N(C1CS(=O)(=O)C=C1)c2ccccc2) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
DOI: 10.15468/irwlmk
title: A new species of Paraproto (Crustacea: Amphipoda) from southern New SouthWales, Australia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Guerra-García, José M., Keable, Stephen J., Ahyong, Shane T. (2020): A new species of Paraproto (Crustacea: Amphipoda) from southern New SouthWales, Australia. Zootaxa 4755 (2): 271-293, DOI: 10.11646/zootaxa.4755.2.4
DOI: 10.5281/zenodo.3731368
title: Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102372 (ID: mpro-x1311 / PDB: 5RFG)

description: Raw diffraction data for mpro-x1311 / PDB ID 5RFG (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFG) - SARS-CoV-2 main protease in complex with PCM-0102372 (SMILES:ClCC(=O)N(C1CS(=O)(=O)C=C1)c2ccccc2) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
DOI: 10.15468/lcjtru
title: New remarkable species of the subgenus Stigmatodipogon Ishikawa, 1965 of the genus Dipogon Fox, 1897 (Hymenoptera: Pompilidae) from Thailand and India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Loktionov, Valery M. (2020): New remarkable species of the subgenus Stigmatodipogon Ishikawa, 1965 of the genus Dipogon Fox, 1897 (Hymenoptera: Pompilidae) from Thailand and India. Zootaxa 4755 (2): 294-300, DOI: 10.11646/zootaxa.4755.2.5
DOI: 10.60732/134fd579
title: electrode_materials_for_ca-based_rechargeable_batteries

description: Dataset for "Analysis of minerals as electrode materials for Ca-based rechargeable batteries". Includes DFT structures of pyroxenes, garnet and carbonates. Dataset was produced to pursue identification of Ca-based high specific energy cathode materials.
DOI: 10.60732/9b58ca47
title: Si_Al_Ti_Seko_PRB_2019_train

description: Test sets from Si_Al_Ti_Seko_PRB_2019. This dataset is compiled of 10,000 selected structures from the ICSD, divided into training and test sets. The dataset was generated for the purpose of training a MLIP with introduced high-order linearly independent rotational invariants up to the sixth order based on spherical harmonics. DFT calculations were carried out with VASP using the PBE cross-correlation functional and an energy cutoff of 400 eV.
DOI: 10.15468/dl.c7d54z
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Macrosolen tetragonus (Blume) Miq."
 ]
}

 The dataset includes 47 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050837-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60732/f48ed7f0
title: xxMD-CASSCF_test

description: Test dataset from xxMD-CASSCF. The xxMD (Extended Excited-state Molecular Dynamics) dataset is a comprehensive collection of non-adiabatic trajectories encompassing several photo-sensitive molecules. This dataset challenges existing Neural Force Field (NFF) models with broader nuclear configuration spaces that span reactant, transition state, product, and conical intersection regions, making it more chemically representative than its contemporaries. xxMD is divided into two datasets, each with corresponding train, test and validation splits. xxMD-CASSCF contains calculations generated using state-averaged complete active state self-consistent field (SA-CASSCF) electronic theory. xxMD-DFT contains recalculated single-point spin-polarized (unrestricted) DFT values.
DOI: 10.15468/dl.w23yzd
title: Occurrence Download

description: A dataset containing 273 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mazus alpinus Masam."
 ]
}

 The dataset includes 273 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050838-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60732/9d095830
title: Carbon_GAP_JCP_2020_train

description: Training data generated for GAP-20. GAP-20 describes the properties of the bulk crystalline and amorphous phases, crystal surfaces, and defect structures with an accuracy approaching that of direct ab initio simulation, but at a significantly reduced cost. The final potential is fitted to reference data computed using the optB88-vdW density functional theory (DFT) functional.
DOI: 10.60732/e9e65ccd
title: JARVIS_DFT_3D_12_12_2022

description: The DFT_3D_12_12_2022 dataset is part of the joint automated repository for various integrated simulations (JARVIS) DFT database. This subset contains configurations of 3D materials. JARVIS is a set of tools and datasets built to meet current materials design challenges.
DOI: 10.15468/dl.7bj8p2
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maianthemum harae Y.H.Tseng & C.T.Chao"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050839-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.evtpt9
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ligularia myriocephala Y.Ling"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050840-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60732/a222a0f6
title: AgAu-nanoalloy_MSMSE_2021

description: Approximately 50,000 configurations of Au, Ag and AuAg used as part of a training dataset for a DP-GEN-based ML model for a Ag-Au nanoalloy potential.
DOI: 10.60732/4096ff5c
title: CA-9_RR_training

description: Random-random configurations from CA-9 dataset used for training NNP_RR potential. CA-9 consists of configurations of carbon with curated subsets chosen to test the effects of intentionally choosing dissimilar configurations when training neural network potentials
DOI: 10.60732/403cd4f2
title: JARVIS_QM9-DGL

description: The JARVIS-QM9-DGL dataset is part of the joint automated repository for various integrated simulations (JARVIS) database. This dataset contains configurations from the QM9 dataset, originally created as part of the datasets at quantum-machine.org, as implemented with the Deep Graph Library (DGL) Python package. Units for r2 (electronic spatial extent) are a0^2; for alpha (isotropic polarizability), a0^3; for mu (dipole moment), D; for Cv (heat capacity), cal/mol K. Units for all other properties are eV. JARVIS is a set of tools and collected datasets built to meet current materials design challenges.