cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28535363.v1
title: Enhancing Scalability in Bayesian Nonparametric Factor Analysis of Spatiotemporal Data

description: This article introduces novel and practicable Bayesian factor analysis frameworks that are computationally feasible for moderate to large spatiotemporal data. Previous Bayesian analysis of spatiotemporal data has utilized a Bayesian factor model with separable temporal latent factors and spatial factor loadings, along with stick-breaking process priors on the loadings to enable clustering of spatial locations. Such a flexible Bayesian model, however, faces a prohibitively high computational cost in posterior sampling when the spatial and temporal dimensions increase to a couple hundred. We address this computational challenge with several speed-up proposals. We integrate a new slice sampling algorithm that permits varying numbers of spatial mixture components across all latent factors and guarantees them to be non-increasing through the posterior sampling iterations, thus effectively reducing the number of mixture parameters. Additionally, we introduce a spatial latent nearest-neighbor Gaussian process prior and new sequential updating algorithms for the spatially varying latent variables in the stick-breaking process prior. Our new models and sampling algorithms exhibit significantly enhanced computational scalability and storage efficiency and possess powerful inferential capabilities for both spatiotemporal prediction and clustering of spatial locations with similar temporal trajectories. The improvement in computational efficiency and inferential performance is substantiated by extensive simulation experiments.
DOI: 10.6084/m9.figshare.28535365
title: High-Dimensional Covariate-Dependent Gaussian Graphical Models

description: Motivated by dynamic biologic network analysis, we propose a covariate-dependent Gaussian graphical model (cdexGGM) for capturing network structure that varies with covariates through a novel parameterization. Utilizing a likelihood framework, our methodology jointly estimates all dynamic edge and vertex parameters. We further develop statistical inference procedures to test the dynamic nature of the underlying network. Concerning large-scale networks, we perform composite likelihood estimation with an l1 penalty to discover sparse dynamic network structures. We establish the estimation error bound in l2 norm and validate the sign consistency in the high-dimensional context. We apply our method to an influenza vaccine data set to model the dynamic gene network that evolves with time. We also investigate a Down syndrome data set to model the dynamic protein network which varies under a factorial experimental design. These applications demonstrate the applicability and effectiveness of the proposed model. The supplemental materials for this article are available online.
DOI: 10.6084/m9.figshare.28535363
title: Enhancing Scalability in Bayesian Nonparametric Factor Analysis of Spatiotemporal Data

description: This article introduces novel and practicable Bayesian factor analysis frameworks that are computationally feasible for moderate to large spatiotemporal data. Previous Bayesian analysis of spatiotemporal data has utilized a Bayesian factor model with separable temporal latent factors and spatial factor loadings, along with stick-breaking process priors on the loadings to enable clustering of spatial locations. Such a flexible Bayesian model, however, faces a prohibitively high computational cost in posterior sampling when the spatial and temporal dimensions increase to a couple hundred. We address this computational challenge with several speed-up proposals. We integrate a new slice sampling algorithm that permits varying numbers of spatial mixture components across all latent factors and guarantees them to be non-increasing through the posterior sampling iterations, thus effectively reducing the number of mixture parameters. Additionally, we introduce a spatial latent nearest-neighbor Gaussian process prior and new sequential updating algorithms for the spatially varying latent variables in the stick-breaking process prior. Our new models and sampling algorithms exhibit significantly enhanced computational scalability and storage efficiency and possess powerful inferential capabilities for both spatiotemporal prediction and clustering of spatial locations with similar temporal trajectories. The improvement in computational efficiency and inferential performance is substantiated by extensive simulation experiments.
DOI: 10.6084/m9.figshare.28535365.v1
title: High-Dimensional Covariate-Dependent Gaussian Graphical Models

description: Motivated by dynamic biologic network analysis, we propose a covariate-dependent Gaussian graphical model (cdexGGM) for capturing network structure that varies with covariates through a novel parameterization. Utilizing a likelihood framework, our methodology jointly estimates all dynamic edge and vertex parameters. We further develop statistical inference procedures to test the dynamic nature of the underlying network. Concerning large-scale networks, we perform composite likelihood estimation with an l1 penalty to discover sparse dynamic network structures. We establish the estimation error bound in l2 norm and validate the sign consistency in the high-dimensional context. We apply our method to an influenza vaccine data set to model the dynamic gene network that evolves with time. We also investigate a Down syndrome data set to model the dynamic protein network which varies under a factorial experimental design. These applications demonstrate the applicability and effectiveness of the proposed model. The supplemental materials for this article are available online.
DOI: 10.15468/dl.me6qdp
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Epidendrum hymenodes Lindl."
 ]
}

 The dataset includes 8 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005438-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14961817
title: Diagnosing Predicted Boundary Layer Evolution Errors during the Morning Transition using Observations and the Common Community Physics Package Single Column Model (CCPP SCM)

description: Advection data, single column model namelists and output for the 12-13 July 2019 cases highlighted in the manuscript.
DOI: 10.5281/zenodo.14968553
title: Diagnosing Predicted Boundary Layer Evolution Errors during the Morning Transition using Observations and the Common Community Physics Package Single Column Model (CCPP SCM)

description: Advection data, single column model namelists and output for the 12-13 July 2019 cases highlighted in the manuscript.
DOI: 10.5281/zenodo.14851856
title: Snapshot of ingested metadata records from the SoilWiseHE Data & Knowledge repository

description: This dataset contains 20.000 metadata records of datasets and knowledge sources related to Soil Health, which are imported from various repositories and, if needed, harmonised to the Dublin Core or ISO19139:2007 schema.

This is a dump of key fields in the postgres database used by the pycsw software used in this project.


Fields:


- identifier: Either a uuid or DOI

- schema: Either iso19139:2007 (indicated as http://www.isotc211.org/2005/gmd) or Dublin Core (indicated as http://www.opengis.net/cat/csw/2.0.2)

- xml: The actual imported (or harmonised content)


 

Sources:







Esdac

EEA

FAO

ISRIC

Bonares

Inspire

Prepsoil

Impact4soil

Cordis

OpenAire

EJP Soil

Islandr




 

SQL to extract the data: 

 








SELECT 

   identifier, schema, regexp_replace(xml, E'[\\n\\r]+', ' ', 'g' ) as xml

FROM

   public.recordsORDER BY

   identifier ASC








 

The SoilWise project received funding from the European Union’s HORIZON Innovation Actions 2022 under grant agreement No. 101112838.
DOI: 10.5281/zenodo.14851857
title: Snapshot of ingested metadata records from the SoilWiseHE Data & Knowledge repository

description: This dataset contains 20.000 metadata records of datasets and knowledge sources related to Soil Health, which are imported from various repositories and, if needed, harmonised to the Dublin Core or ISO19139:2007 schema.

This is a dump of key fields in the postgres database used by the pycsw software used in this project.


Fields:


- identifier: Either a uuid or DOI

- schema: Either iso19139:2007 (indicated as http://www.isotc211.org/2005/gmd) or Dublin Core (indicated as http://www.opengis.net/cat/csw/2.0.2)

- xml: The actual imported (or harmonised content)


 

Sources:







Esdac

EEA

FAO

ISRIC

Bonares

Inspire

Prepsoil

Impact4soil

Cordis

OpenAire

EJP Soil

Islandr




 

SQL to extract the data: 

 








SELECT 

   identifier, schema, regexp_replace(xml, E'[\\n\\r]+', ' ', 'g' ) as xml

FROM

   public.recordsORDER BY

   identifier ASC








 

The SoilWise project received funding from the European Union’s HORIZON Innovation Actions 2022 under grant agreement No. 101112838.
DOI: 10.15468/dl.ew7w7z
title: Occurrence Download

description: A dataset containing 289098 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-75.8811 5.52447,-75.89442 5.491,-75.90687 5.47699,-75.8913 5.47387,-75.87573 5.48944,-75.85783 5.49801,-75.83214 5.48244,-75.82202 5.49411,-75.81035 5.5089,-75.78155 5.53459,-75.76987 5.53303,-75.76034 5.55094,-75.73621 5.55561,-75.72532 5.56339,-75.73232 5.57507,-75.74322 5.59141,-75.75567 5.60231,-75.75023 5.62255,-75.75645 5.6459,-75.77046 5.65135,-75.78525 5.65602,-75.80861 5.66381,-75.81873 5.65135,-75.82495 5.63578,-75.88022 5.6459,-75.89112 5.62333,-75.88886 5.60105,-75.87555 5.55716,-75.8811 5.52447))"
 ]
}

 The dataset includes 289098 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005460-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.12751/g-node.1lfvzi
title: Supplemental MRI data of our polarized light microscopy study of the human caudate head

description: MRI Data for our publication Fiber architecture in the human ventromedial striatum and its relation with the bed nucleus of the stria terminalis submitted to PLOS ONE
description: IsSupplementTo: Krueger O, et al. (2025): Fiber architecture in the human ventromedial striatum and its relation with the bed nucleus of the stria terminalis.
description: IsSupplementTo: Krueger O, Klose U, Hagberg GE (2025) Polarized light microscopy data of the human caudate head. G-Node. https://doi.org/10.12751/g-node.xl2ctk
DOI: 10.12751/g-node.xl2ctk
title: Polarized light microscopy data of the human caudate head

description: Microscopy Data for our publication Fiber architecture in the human ventromedial striatum and its relation with the bed nucleus of the stria terminalis submitted to PLOS ONE
description: IsSupplementTo: Krueger O, et al. (2025): Fiber architecture in the human ventromedial striatum and its relation with the bed nucleus of the stria terminalis.
DOI: 10.15468/dl.g3qfb5
title: Occurrence Download

description: A dataset containing 31395 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eschrichtius robustus (Lilljeborg, 1861)"
 ]
}

 The dataset includes 31395 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005479-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25918777
title: Supplemental Material: Juxtaposition of Triassic and Late Cretaceous blueschists reveals Neo-Tethyan subduction erosion in NW Turkey

description: We provide the results of zircon U-Pb age dating and geochemisty of minerals for the the blueschist-facies rocks in Tavşanlı zone, NW Turkey. According to these data, we reveal the link between high-pressure metamorphic rocks and regional tectonics. Then, we talk about the role of the subduction erosion process on juxtaposition of blueschists with large age difference.
DOI: 10.6084/m9.figshare.25918777.v1
title: Supplemental Material: Juxtaposition of Triassic and Late Cretaceous blueschists reveals Neo-Tethyan subduction erosion in NW Turkey

description: We provide the results of zircon U-Pb age dating and geochemisty of minerals for the the blueschist-facies rocks in Tavşanlı zone, NW Turkey. According to these data, we reveal the link between high-pressure metamorphic rocks and regional tectonics. Then, we talk about the role of the subduction erosion process on juxtaposition of blueschists with large age difference.
DOI: 10.6084/m9.figshare.25918777.v2
title: Supplemental Material: Juxtaposition of Triassic and Late Cretaceous blueschists reveals Neo-Tethyan subduction erosion in NW Turkey

description: We provide the results of zircon U-Pb age dating and geochemisty of minerals for the the blueschist-facies rocks in Tavşanlı zone, NW Turkey. According to these data, we reveal the link between high-pressure metamorphic rocks and regional tectonics. Then, we talk about the role of the subduction erosion process on juxtaposition of blueschists with large age difference.
DOI: 10.15131/shef.data.27910521
title: Quantum scalar field theory on equal-angular-momenta Myers-Perry-AdS black holes

description: Data for the paper "Quantum scalar field theory on equal-angular-momenta Myers-Perry-AdS black holes", arXiv:2412.02814 [hep-th].We study the canonical quantization of a massive scalar field on a five dimensional, rotating black hole space-time. We focus on the case where the space-time is asymptotically anti-de Sitter and the black hole's two angular momentum parameters are equal. In this situation the geometry possesses additional symmetries which simplify both the mode solutions of the scalar field equation and the stress-energy tensor. When the angular momentum of the black hole is sufficiently small that there is no speed-of-light surface, there exists a Killing vector which is time-like in the region exterior to the event horizon. In this case classical superradiance is absent and we construct analogues of the usual Boulware and Hartle-Hawking quantum states for the quantum scalar field. We compute the differences in expectation values of the square of the quantum scalar field operator and the stress-energy tensor operator between these two quantum states.<br>
DOI: 10.15131/shef.data.27910521.v2
title: Quantum scalar field theory on equal-angular-momenta Myers-Perry-AdS black holes

description: Data for the paper "Quantum scalar field theory on equal-angular-momenta Myers-Perry-AdS black holes", arXiv:2412.02814 [hep-th].We study the canonical quantization of a massive scalar field on a five dimensional, rotating black hole space-time. We focus on the case where the space-time is asymptotically anti-de Sitter and the black hole's two angular momentum parameters are equal. In this situation the geometry possesses additional symmetries which simplify both the mode solutions of the scalar field equation and the stress-energy tensor. When the angular momentum of the black hole is sufficiently small that there is no speed-of-light surface, there exists a Killing vector which is time-like in the region exterior to the event horizon. In this case classical superradiance is absent and we construct analogues of the usual Boulware and Hartle-Hawking quantum states for the quantum scalar field. We compute the differences in expectation values of the square of the quantum scalar field operator and the stress-energy tensor operator between these two quantum states.<br>
DOI: 10.15131/shef.data.27910521.v1
title: Quantum scalar field theory on equal-angular-momenta Myers-Perry-AdS black holes

description: Data for the paper "Quantum scalar field theory on equal-angular-momenta Myers-Perry-AdS black holes", arXiv:2412.02814 [hep-th].We study the canonical quantization of a massive scalar field on a five dimensional, rotating black hole space-time. We focus on the case where the space-time is asymptotically anti-de Sitter and the black hole's two angular momentum parameters are equal. In this situation the geometry possesses additional symmetries which simplify both the mode solutions of the scalar field equation and the stress-energy tensor. When the angular momentum of the black hole is sufficiently small that there is no speed-of-light surface, there exists a Killing vector which is time-like in the region exterior to the event horizon. In this case classical superradiance is absent and we construct analogues of the usual Boulware and Hartle-Hawking quantum states for the quantum scalar field. We compute the differences in expectation values of the square of the quantum scalar field operator and the stress-energy tensor operator between these two quantum states.<br>
DOI: 10.15468/dl.5m7ys5
title: Occurrence Download

description: A dataset containing 6631460 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chroicocephalus ridibundus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-180 -90, 180 -90, 180 90, -180 90, -180 -90))"
 ]
}

 The dataset includes 6631460 records from 3214 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072193-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ew2838
title: Occurrence Download

description: A dataset containing 877 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diclinanona Diels"
 ]
}

 The dataset includes 877 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0199184-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ydayv
title: Occurrence Download

description: A dataset containing 1103 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erythranthe grandis (Greene) G.L.Nesom"
 ]
}

 The dataset includes 1103 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041804-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fh7vsa
title: Occurrence Download

description: A dataset containing 2082 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "TaxonKey is Thlaspi arvense L."
 ]
}

 The dataset includes 2082 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027556-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.86spg9
title: Occurrence Download

description: A dataset containing 718 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vampyrodes caraccioli (Thomas, 1889)"
 ]
}

 The dataset includes 718 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086734-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gppahx
title: Occurrence Download

description: A dataset containing 3920 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "StateProvince is one of (tolima)",
 "DatasetKey is one of (Caracterización de flora, edafofauna epígea, anfibios y aves del Complejo Páramos Chilí - Barragán, Tolima)"
 ]
 }
 ]
}

 The dataset includes 3920 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086726-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nnf3mp
title: Occurrence Download

description: A dataset containing 272933 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Hordeum vulgare L."
 ]
}

 The dataset includes 272933 records from 515 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0119750-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ycysv
title: Occurrence Download

description: A dataset containing 399102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Ireland, United Kingdom of Great Britain and Northern Ireland, Svalbard and Jan Mayen, Norway, Sweden, Finland, Estonia, Latvia, Lithuania, Portugal, Spain, France, Germany, Belgium, Netherlands, Switzerland, Austria, Italy, Greece, Cyprus, Türkiye, Russian Federation, Belarus, Ukraine, Poland, Czechia, Hungary, Slovakia, Romania, Bulgaria, North Macedonia, Albania, Montenegro, Serbia, Kosovo, Bosnia and Herzegovina, Slovenia, Croatia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rosmarinus officinalis L."
 ]
}

 The dataset includes 399102 records from 434 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059964-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mg9j8h
title: Occurrence Download

description: A dataset containing 1503 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Abelmoschus moschatus (L.) Medik.",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 1503 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011071-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.avt5q7
title: Occurrence Download

description: A dataset containing 13923066 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "License is one of (CC0 1.0, CC-BY 4.0)"
 ]
}

 The dataset includes 13923066 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059958-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nwbcc2
title: Occurrence Download

description: A dataset containing 183 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 {
 "or" : [
 "Country is Mexico",
 "Country is United States of America"
 ]
 },
 "TaxonKey is Lophophora williamsii (Lem. ex Salm-Dyck) J.M.Coult."
 ]
}

 The dataset includes 183 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027559-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7uyaxu
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "DatasetKey is Herbario Nacional Colombiano (COL)",
 "TaxonKey is Passiflora foetida L."
 ]
}

 The dataset includes 77 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0119755-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.