cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14258366.v2
title: Norfish French Northeast Atlantic Herring Fishery 1520–1790

description: Identifying sources for the French Herring Fishery, which prevailed in the North Sea, the Irish Sea, off the Western coast of Scotland and through the English Channel during the 1520-1790 period, is difficult. Whatever archived records may exist are sparse, unresearched and scattered.The clearest indications of the scale and geographic location of the French herring fishery may be found in old prints that indicate descriptions of fish, fishing grounds, countries involved and techniques; these prints dating from as early as the 16th century chart the places where the French sailed to catch herring: the coasts of Brittany, Normandy and Picardy, the English coasts, the Irish sea, Iceland and other places (Savary des Bruslons 1726; Duhamel du Monceau Henri-Louis 1772; Noel de la Morinière 1815).
DOI: 10.6073/pasta/decb62bcd601dab104f6be348216b7d0
title: Effects of Warming on Soil Biogeochemistry at Harvard Forest 2014-2015

description: More than two decades of experimental soil warming in the Prospect Hill tract of the Harvard Forest has revealed non-linear soil respiration (HF005) and soil carbon loss patterns (Melillo et al., Science, 2017). The datasets here were collected to evaluate how the quantity and quality of soil carbon has been affected by 5C warming, and to assess the role that altered extracellular enzyme allocation may play in this. We collected soils over the 2014 growing season, after 23 years of soil warming. We confirmed previous results that warming had depleted the soil of organic matter, and this was accompanied by an overall decrease in microbial biomass particularly apparent in the forest floor in the fall. Using pyrolysis-GCMS, we found that the relative abundance of soil organic matter compound classes was unaffected by warming in the upper organic horizon (“forest floor”). However, lipids increased in relative abundance to the detriment of polysaccharides and lignin in the upper mineral soil, where warming had depleted soil mineral surfaces of organic matter. Despite these changes in soil organic matter quantity and quality, the potential extracellular enzyme activity per gram of soil was unaffected by warming treatment under common lab conditions. However, under in-situ temperature conditions, warming increased enzyme activity per unit microbial biomass, indicating heated plot microbes get better return on their enzyme investment than those in control plots.
DOI: 10.5281/zenodo.5079730
title: Negative Vessel Remodeling in Stargardt Disease Quantified with Volume-Rendered Optical Coherence Tomography Angiography

description: Data underlying the figures in the publication “Negative Vessel Remodeling in Stargardt Disease Quantified with Volume-Rendered Optical Coherence Tomography Angiography”, published in Retina, <strong>2021</strong>. Doi: 10.1097/IAE.0000000000003110 Table of contents: <strong>1. Dataset 1</strong>; Excel sheet containing the source data of the publication.
DOI: 10.5281/zenodo.5079729
title: Negative Vessel Remodeling in Stargardt Disease Quantified with Volume-Rendered Optical Coherence Tomography Angiography

description: Data underlying the figures in the publication “Negative Vessel Remodeling in Stargardt Disease Quantified with Volume-Rendered Optical Coherence Tomography Angiography”, published in Retina, <strong>2021</strong>. Doi: 10.1097/IAE.0000000000003110 Table of contents: <strong>1. Dataset 1</strong>; Excel sheet containing the source data of the publication.
DOI: 10.6084/m9.figshare.14258357
title: Norfish 01 Flemish Herring Fisheries 1386–1790

description: From medieval times and into the early modern period, the port of Oostende (Ostend) was a primary fishing port on the Flemish coast, second only to Nieuwport (Nieuwpoort) in Flanders. The Flemish coastal fisheries produced an industry that was highly developed and influential, reaching markets of the Hanseatic League along the Baltic coast, England and the Mediterranean. This “Golden Age” of Flemish Fisheries Oostende’s fishing effort was interrupted by natural effects such as the silting of its harbour, and numerous human affects such as warfare and political interference. However, due to ingenuity and fortitude of its fishermen, and the application of revolutionary modern techniques for treating caught fish, the industry developed apace. The 15th and 16th Centuries are regarded as the “Bloom period” of the Flemish herring fisheries.
DOI: 10.6084/m9.figshare.14258357.v2
title: Norfish Flemish Herring Fisheries 1386–1790

description: From medieval times and into the early modern period, the port of Oostende (Ostend) was a primary fishing port on the Flemish coast, second only to Nieuwport (Nieuwpoort) in Flanders. The Flemish coastal fisheries produced an industry that was highly developed and influential, reaching markets of the Hanseatic League along the Baltic coast, England and the Mediterranean. This “Golden Age” of Flemish Fisheries Oostende’s fishing effort was interrupted by natural effects such as the silting of its harbour, and numerous human affects such as warfare and political interference. However, due to ingenuity and fortitude of its fishermen, and the application of revolutionary modern techniques for treating caught fish, the industry developed apace. The 15th and 16th Centuries are regarded as the “Bloom period” of the Flemish herring fisheries.
DOI: 10.5281/zenodo.5077173
title: DINEOF reconstructed MODIS-terra 8-day composite of surface chlorophyll data

description: Sea surface chlorophyll data are the 8–day composite of MODIS–terra chlorophyll products from 2001 to 2019. The L3 data with a 4 km spatial resolution were extracted from 42°N-44.5°N and 65.5°W-71°W and interpolated spatially onto a 0.025°*0.025° grid. Cloud–free chlorophyll data were reconstructed using the Data INterpolation Empirical Orthogonal Function (DINEOF) method, which has been applied to fill the spatial gaps of satellite products without lowering their qualities. The original 8–day composite of MODIS–terra chlorophyll products are available at https://oceancolor.gsfc.nasa.gov. Only those spatial points without data due to clouds or sun glint are constructed using the DINEOF. chl_GOM_origin_and_DINEOF.mat is the surface chlorophyll data. lon_GOM_2D.mat and lat_GOM_2D.mat are longitude and latitude information. The data can be loaded directly using MATLAB (.mat file).
DOI: 10.5281/zenodo.5076698
title: DINEOF reconstructed MODIS-terra 8-day composite of surface chlorophyll data

description: Sea surface chlorophyll data are the 8–day composite of MODIS–terra chlorophyll products from 2001 to 2019. The L3 data with a 4 km spatial resolution were extracted from 42°N-44.5°N and 65.5°W-71°W and interpolated spatially onto a 0.025°*0.025° grid. Cloud–free chlorophyll data were reconstructed using the Data INterpolation Empirical Orthogonal Function (DINEOF) method, which has been applied to fill the spatial gaps of satellite products without lowering their qualities. The original 8–day composite of MODIS–terra chlorophyll products are available at https://oceancolor.gsfc.nasa.gov. Only those spatial points without data due to clouds or sun glint are constructed using the DINEOF. chl_GOM_origin_and_DINEOF.mat is the surface chlorophyll data. lon_GOM_2D.mat and lat_GOM_2D.mat are longitude and latitude information. The data can be loaded directly using MATLAB (.mat file).
DOI: 10.6073/pasta/b8b79e3cb4c8ad0b16180f6100f1093b
title: Effects of Warming on Soil Microbial Oxidative Activity at Harvard Forest 2013

description: As Earth’s climate warms, the massive stores of carbon found in soil are predicted to become depleted, and leave behind a smaller carbon pool that is less accessible to microbes. At a long-term forest soil-warming experiment in central Massachusetts, soil respiration and bacterial diversity have increased, while fungal biomass and microbially-accessible soil carbon have decreased. Here, we evaluate how warming has affected the microbial community’s capability to degrade chemically-complex soil carbon using lignin-amended BioSep beads. We profiled the bacterial and fungal communities using PCR-based methods and completed extracellular enzyme assays as a proxy for potential community function. We found that lignin-amended beads selected for a distinct community containing bacterial taxa closely related to known lignin degraders, as well as members of many genera not previously noted as capable of degrading lignin. Warming tended to drive bacterial community structure more strongly in the lignin beads, while the effect on the fungal community was limited to unamended beads. Of those bacterial operational taxonomic units (OTUs) enriched by the warming treatment, many were enriched uniquely on lignin-amended beads. These taxa may be contributing to enhanced soil respiration under warming despite reduced readily available C availability. In aggregate, these results suggest that there is genetic potential for chemically complex soil carbon degradation that may lead to extended elevated soil respiration with long-term warming.
DOI: 10.5281/zenodo.5079543
title: Data from: Convergent changes in gene expression associated with repeated transitions between hummingbird and bee pollinated flowers

description: Transcriptomic data for 6 Gesneriaceae species (<strong><em>Nemathanthus albus </em>-NA-,<em> N. fritchii </em>-NF-<em>, Sinningia eumorpha </em>-SE-<em>, S. magnifica </em>-SM-<em>, Vanhouttea calcarata </em>-VC-<em>, Paliavana tenuiflora </em>-PV-</strong>), presented in "Convergent changes in gene expression associated with repeated transitions between hummingbird and bee pollinated flowers". For each species, transcriptomes were obtained from RNA collected from flowers at three different developmental stages. The following files are availables: <strong>Trimmed_Species_Trinity.fasta:</strong> Transcriptome assembly of the species in fasta format. The transcriptomes were obtained from RNA-Seq (Illumina paired-end reads) of three different floral developmental stages. For more information, please refer to the publication. <strong>ORF_AllSpecies_Pep.fasta</strong>: Predicted protein sequences for each transcript of each species. <strong>ORF_AllSpecies_CDS.fasta</strong>: Predicted coding sequences (CDS) for each transcript of each species. <strong>BLASTP_allgenes6species.FINAL.txt</strong>: Blastp annotation for each transcript of each species. <strong>BLASTX_allgenes6species.FINAL.txt: </strong>Blastx annotation for each transcript of each species. <strong>groups.txt </strong>: Orthologous groups (OG) between the six species obtained with OrthoMCL. For more information, please refer to the publication. <strong>1to1_OG.txt</strong>: Obtained single-copy orthologs (1-to-1 orthologous groups) between the six species <strong>OG_and_genes.txt : </strong>link between orthologous groups and genes ID for each species. For more information, please refer to the publication.
DOI: 10.5281/zenodo.5079542
title: Data from: Convergent changes in gene expression associated with repeated transitions between hummingbird and bee pollinated flowers

description: Transcriptomic data for 6 Gesneriaceae species (<strong><em>Nemathanthus albus </em>-NA-,<em> N. fritchii </em>-NF-<em>, Sinningia eumorpha </em>-SE-<em>, S. magnifica </em>-SM-<em>, Vanhouttea calcarata </em>-VC-<em>, Paliavana tenuiflora </em>-PV-</strong>), presented in "Convergent changes in gene expression associated with repeated transitions between hummingbird and bee pollinated flowers". For each species, transcriptomes were obtained from RNA collected from flowers at three different developmental stages. The following files are availables: <strong>Trimmed_Species_Trinity.fasta:</strong> Transcriptome assembly of the species in fasta format. The transcriptomes were obtained from RNA-Seq (Illumina paired-end reads) of three different floral developmental stages. For more information, please refer to the publication. <strong>ORF_AllSpecies_Pep.fasta</strong>: Predicted protein sequences for each transcript of each species. <strong>ORF_AllSpecies_CDS.fasta</strong>: Predicted coding sequences (CDS) for each transcript of each species. <strong>BLASTP_allgenes6species.FINAL.txt</strong>: Blastp annotation for each transcript of each species. <strong>BLASTX_allgenes6species.FINAL.txt: </strong>Blastx annotation for each transcript of each species. <strong>groups.txt </strong>: Orthologous groups (OG) between the six species obtained with OrthoMCL. For more information, please refer to the publication. <strong>1to1_OG.txt</strong>: Obtained single-copy orthologs (1-to-1 orthologous groups) between the six species <strong>OG_and_genes.txt : </strong>link between orthologous groups and genes ID for each species. For more information, please refer to the publication.
DOI: 10.23708/svr1qs
title: Les ingénieurs du sol sous les tropiques. Une piste pour mieux atteindre les objectifs du développement durable ?

description: Présentation réalisée aux journées des Grands Témoins 13-14 Janvier 2020, Sion, Suisse.
DOI: 10.6073/pasta/66feede08606ba6bdcb2ca667dfab0eb
title: Red Wood-Ant Nests and Fault-Related Methane Micro-Seepage 2016

description: We measured methane (CH4) and stable carbon isotope of methane (ẟ13C-CH4) concentrations in ambient air and within a red wood-ant (RWA; Formica polyctena) nest in the Neuwied Basin (Germany) using high-resolution in-situ sampling to detect microbial, thermogenic, and abiotic fault-related micro-seepage of CH4. Methane degassing from RWA nests was not synchronized with earth tides, nor was it influenced by micro-earthquake degassing or concomitantly measured RWA activity. Two ẟ13C-CH4 signatures were identified in nest gas: −69‰ and −37‰. The lower peak was attributed to microbial decomposition of organic matter within the RWA nest, in line with previous observations that RWA nests are hot-spots of microbial CH4. The higher peak has not been reported in previous studies. We attribute this peak to fault-related CH4 emissions moving via fault networks into the RWA nest, which could originate either from thermogenic or abiotic CH4 formation. Sources of these micro-seepages could be Devonian schists, iron-bearing “Klerf Schichten,” or overlapping micro-seepage of magmatic CH4 from the Eifel plume. Given the abundance of RWA nests on the landscape, their role as sources of microbial CH4 and biological indicators for abiotically-derived CH4 should be included in estimation of methane emissions that are contributing to climatic change.
DOI: 10.6084/m9.figshare.13177163
title: Files for Building the Rust Expression Browser

description: This entry consists of a compressed tar archive containing all the file used to build the initial rust expression browser (www.rust-expression.com).<br>Initial code to provision the software for the browser is available at:https://github.com/JIC-CSB/expvip-ansible<br><br>Code to build the browser using the metadata in this entry is available at:https://github.com/SaundersLab/Rust_Expression_Browser<br>
DOI: 10.6084/m9.figshare.13177163.v6
title: Files for Building the Rust Expression Browser

description: This entry consists of a compressed tar archive containing all the file used to build the initial rust expression browser (www.rust-expression.com).<br>Initial code to provision the software for the browser is available at:https://github.com/JIC-CSB/expvip-ansible<br><br>Code to build the browser using the metadata in this entry is available at:https://github.com/SaundersLab/Rust_Expression_Browser<br>
DOI: 10.25934/00002553.0
title: Available IPD datapackage for study 'A Multicenter, Randomized, Double-Blind, Placebo- and Active-Controlled, Phase 3 Study to Evaluate the Efficacy and Safety of TAK-875 25 mg and 50 mg Compared to Placebo and Sitagliptin 100 mg When Used in Combination With Metformin in Subjects With Type 2 Diabetes'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00002553.1
title: IPD datapackage for study 'A Multicenter, Randomized, Double-Blind, Placebo- and Active-Controlled, Phase 3 Study to Evaluate the Efficacy and Safety of TAK-875 25 mg and 50 mg Compared to Placebo and Sitagliptin 100 mg When Used in Combination With Metformin in Subjects With Type 2 Diabetes' and research request: 'Inferential reproducibility of therapeutic research: a registered report for a cross-sectional study of RCTs available on major data-sharing platforms'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.15468/3ymraw
title: Proposal of the Caryanda amplexicerca-species group (Orthoptera: Acridoidea) with description of two new species from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mao, Ben-Yong, Li, Miao (2015): Proposal of the Caryanda amplexicerca-species group (Orthoptera: Acridoidea) with description of two new species from China. Zoological Systematics 40 (4): 451-458, DOI: 10.11865/zs.20150403, URL: http://zoobank.org/91a387dd-2a71-4166-8680-47ffb782ab6d
DOI: 10.6073/pasta/505807c0e94f4c4a395ed3d375d8d18a
title: Atmospheric Oxygen and Carbon Dioxide at Harvard Forest EMS Tower since 2006

description: This archive features long-term measurements of the atmospheric mixing ratios of O2 and CO2 at two heights on the Harvard Forest EMS flux tower. The data fields include the time of data collection, the height from which the samples were drawn, the O2 mixing ratio and the CO2 mixing ratio.
DOI: 10.6084/m9.figshare.14258351
title: Norfish 03 English Herring Fishery 1520 – 1790

description: The English herring fishery was active as an industry since at least medieval times and likely even earlier (Galloway 2017). The abundance of the annual herring migration from North to South along the East of England coast led to many fleets carrying out their fishing efforts in these productive waters during the herring season, including local English fishers. However, despite the clear engagement in the industry, there is very little archival evidence of actual statistical data that indicates specific catches, landings and import/export figures. Also, there is little indication of the level of domestic consumption for England. This lacuna makes any reasonable evaluation of the magnitude of the herring catch particularly difficult.
DOI: 10.6084/m9.figshare.14258351.v4
title: Norfish 03 English Herring Fishery 1520 – 1790

description: The English herring fishery was active as an industry since at least medieval times and likely even earlier (Galloway 2017). The abundance of the annual herring migration from North to South along the East of England coast led to many fleets carrying out their fishing efforts in these productive waters during the herring season, including local English fishers. However, despite the clear engagement in the industry, there is very little archival evidence of actual statistical data that indicates specific catches, landings and import/export figures. Also, there is little indication of the level of domestic consumption for England. This lacuna makes any reasonable evaluation of the magnitude of the herring catch particularly difficult.
DOI: 10.6084/m9.figshare.14258351.v3
title: Norfish English Herring Fishery 1520 – 1790

description: The English herring fishery was active as an industry since at least medieval times and likely even earlier (Galloway 2017). The abundance of the annual herring migration from North to South along the East of England coast led to many fleets carrying out their fishing efforts in these productive waters during the herring season, including local English fishers. However, despite the clear engagement in the industry, there is very little archival evidence of actual statistical data that indicates specific catches, landings and import/export figures. Also, there is little indication of the level of domestic consumption for England. This lacuna makes any reasonable evaluation of the magnitude of the herring catch particularly difficult.
DOI: 10.5517/ccdc.csd.cc2503dq
title: CCDC 1996102: Experimental Crystal Structure Determination

description: Related Article: Henri-Philippe Mattelaer,  Anne-Sophie Van Hool,  Flip de Jong,  Mark Van der Auweraer,  Luc Van Meervelt,  Wim Dehaen,  Piet Herdewijn|2020|Eur.J.Org.Chem.|2020|4022|doi:10.1002/ejoc.202000563
DOI: 10.5517/ccdc.csd.cc2503p0
title: CCDC 1996111: Experimental Crystal Structure Determination

description: Related Article: Nicolas Meitinger,   Alexander Mengele,   Kamil Witas,   Stephan Kupfer,   Sven Rau,  Djawed Nauroozi|2020|Eur.J.Org.Chem.|2020|6555|doi:10.1002/ejoc.202001091
DOI: 10.5517/ccdc.csd.cc2503q1
title: CCDC 1996112: Experimental Crystal Structure Determination

description: Related Article: Nicolas Meitinger,   Alexander Mengele,   Kamil Witas,   Stephan Kupfer,   Sven Rau,  Djawed Nauroozi|2020|Eur.J.Org.Chem.|2020|6555|doi:10.1002/ejoc.202001091
DOI: 10.5517/ccdc.csd.cc2503r2
title: CCDC 1996113: Experimental Crystal Structure Determination

description: Related Article: Nicolas Meitinger,   Alexander Mengele,   Kamil Witas,   Stephan Kupfer,   Sven Rau,  Djawed Nauroozi|2020|Eur.J.Org.Chem.|2020|6555|doi:10.1002/ejoc.202001091
DOI: 10.5517/ccdc.csd.cc2503s3
title: CCDC 1996114: Experimental Crystal Structure Determination

description: Related Article: Nicolas Meitinger,   Alexander Mengele,   Kamil Witas,   Stephan Kupfer,   Sven Rau,  Djawed Nauroozi|2020|Eur.J.Org.Chem.|2020|6555|doi:10.1002/ejoc.202001091
DOI: 10.5517/ccdc.csd.cc2503t4
title: CCDC 1996115: Experimental Crystal Structure Determination

description: Related Article: Nicolas Meitinger,   Alexander Mengele,   Kamil Witas,   Stephan Kupfer,   Sven Rau,  Djawed Nauroozi|2020|Eur.J.Org.Chem.|2020|6555|doi:10.1002/ejoc.202001091
DOI: 10.5517/ccdc.csd.cc2504x8
title: CCDC 1996149: Experimental Crystal Structure Determination

description: Related Article: Illia O. Feskov,  Bohdan O. Golub,  Bohdan V. Vashchenko,  Vadym V. Levterov,  Ivan S. Kondratov,  Oleksandr O Grygorenko,  Günter Haufe|2020|Eur.J.Org.Chem.|2020|4755|doi:10.1002/ejoc.202000733
DOI: 10.5517/ccdc.csd.cc2504y9
title: CCDC 1996150: Experimental Crystal Structure Determination

description: Related Article: Illia O. Feskov,  Bohdan O. Golub,  Bohdan V. Vashchenko,  Vadym V. Levterov,  Ivan S. Kondratov,  Oleksandr O Grygorenko,  Günter Haufe|2020|Eur.J.Org.Chem.|2020|4755|doi:10.1002/ejoc.202000733
DOI: 10.5517/ccdc.csd.cc2504zb
title: CCDC 1996151: Experimental Crystal Structure Determination

description: Related Article: Illia O. Feskov,  Bohdan O. Golub,  Bohdan V. Vashchenko,  Vadym V. Levterov,  Ivan S. Kondratov,  Oleksandr O Grygorenko,  Günter Haufe|2020|Eur.J.Org.Chem.|2020|4755|doi:10.1002/ejoc.202000733
DOI: 10.5517/ccdc.csd.cc25050d
title: CCDC 1996152: Experimental Crystal Structure Determination

description: Related Article: Illia O. Feskov,  Bohdan O. Golub,  Bohdan V. Vashchenko,  Vadym V. Levterov,  Ivan S. Kondratov,  Oleksandr O Grygorenko,  Günter Haufe|2020|Eur.J.Org.Chem.|2020|4755|doi:10.1002/ejoc.202000733