cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12038085.v1
title: Additional file 2 of HeMoQuest: a webserver for qualitative prediction of transient heme binding to protein motifs

description: Additional file 2 Supplementary data Additionally, the datasets used to train and validate the application is also available for download from the “HeMoQuest Datasets” section of the webserver. A description of the files provided is given below. 1. Training data. 1a. Title: HeMoQuest KD prediction training data. 1b. Description: This comma separated values file contains 72 sequences along with their KD values used in the training of the ML algorithms of HeMoQuest. Column 1 (ID) contains a sequence identifier, column 2 (Seq) contains the sequence and column 3 (KD) contains the experimentally determined KD value of for the peptide sequence. 2. Test data. 2a. Title: HeMoQuest test data for heme binding residue and motif prediction. 2b. Description: This file contains 469 sequences in fasta format, obtained from the BioLip database, all of which are said to bind heme. This data was used to test HeMoQuest’s ability to detect heme binding residues in comparison to existing algorithms. 3. Test data. 3a. Title: HemoQuest test data with manually curated transient heme binding protein sequences. 3b. Description: This file contains 45 sequences in fasta format from 40 manually curated proteins (from Additional Table 1) that are known from literature to be transient heme binding proteins. Few of the proteins have their origins in more than one species and hence we end up with 45 sequences for 40 proteins. 4. Training features. 4a. Title: Features used in training the HeMoQuest KD prediction. 4b. Description: This comma separated values file contains 76 initial features that were generated for the KD prediction training from the R package Peptides. The final set of features used are from the columns ‘charge_vec’, ‘hydrof_vec_octanolScale_pH8’, ‘acidic’, ‘kideraFac3’, ‘vhseScale5_vec’, ‘vhseScale7_vec’, ‘protFP5_vec’ and ‘fasgaiVec4’.
DOI: 10.6084/m9.figshare.12038064
title: Additional file 8 of Overexpression of PpSnRK1α in tomato enhanced salt tolerance by regulating ABA signaling pathway and reactive oxygen metabolism

description: Additional file 8 : Table S5. List of TFs and their expression levels in WT and PpSnRK1α overexpression lines.
DOI: 10.6084/m9.figshare.12038064.v1
title: Additional file 8 of Overexpression of PpSnRK1α in tomato enhanced salt tolerance by regulating ABA signaling pathway and reactive oxygen metabolism

description: Additional file 8 : Table S5. List of TFs and their expression levels in WT and PpSnRK1α overexpression lines.
DOI: 10.6084/m9.figshare.12038055
title: Additional file 7 of Overexpression of PpSnRK1α in tomato enhanced salt tolerance by regulating ABA signaling pathway and reactive oxygen metabolism

description: Additional file 7 : Figure S3. 101 TFs of 37 families regulated by PpSnRK1α.
DOI: 10.6084/m9.figshare.12038055.v1
title: Additional file 7 of Overexpression of PpSnRK1α in tomato enhanced salt tolerance by regulating ABA signaling pathway and reactive oxygen metabolism

description: Additional file 7 : Figure S3. 101 TFs of 37 families regulated by PpSnRK1α.
DOI: 10.6084/m9.figshare.12038040
title: Additional file 5 of Overexpression of PpSnRK1α in tomato enhanced salt tolerance by regulating ABA signaling pathway and reactive oxygen metabolism

description: Additional file 5 : Table S3. KEGG enrichment analysis.
DOI: 10.6084/m9.figshare.12038040.v1
title: Additional file 5 of Overexpression of PpSnRK1α in tomato enhanced salt tolerance by regulating ABA signaling pathway and reactive oxygen metabolism

description: Additional file 5 : Table S3. KEGG enrichment analysis.
DOI: 10.6084/m9.figshare.12038037
title: Additional file 4 of Overexpression of PpSnRK1α in tomato enhanced salt tolerance by regulating ABA signaling pathway and reactive oxygen metabolism

description: Additional file 4 : Table S2. List of DEGs and their expression levels in WT and PpSnRK1α overexpression lines.
DOI: 10.6084/m9.figshare.12038037.v1
title: Additional file 4 of Overexpression of PpSnRK1α in tomato enhanced salt tolerance by regulating ABA signaling pathway and reactive oxygen metabolism

description: Additional file 4 : Table S2. List of DEGs and their expression levels in WT and PpSnRK1α overexpression lines.
DOI: 10.6084/m9.figshare.12038013
title: Additional file 1 of DNA methylation outlier burden, health, and ageing in Generation Scotland and the Lothian Birth Cohorts of 1921 and 1936

description: Additional file 1: Supplementary Tables 1–11.
DOI: 10.6084/m9.figshare.12038013.v1
title: Additional file 1 of DNA methylation outlier burden, health, and ageing in Generation Scotland and the Lothian Birth Cohorts of 1921 and 1936

description: Additional file 1: Supplementary Tables 1–11.
DOI: 10.6084/m9.figshare.12037983
title: Additional file 1 of Dopamine response gene pathways in dorsal striatum MSNs from a gene expression viewpoint: cAMP-mediated gene networks

description: Additional file 1: Table S1. Encoding and expression profiles of transcripts. Table S2. Expression profiles of phosphatase subunit genes. Table S3. Encoding and expression profiles of transcripts. Gene symbol denotes the presence of transcripts variation in the names supplied with dash followed by number of (minor expressed) splice isoform.
DOI: 10.6084/m9.figshare.12037983.v1
title: Additional file 1 of Dopamine response gene pathways in dorsal striatum MSNs from a gene expression viewpoint: cAMP-mediated gene networks

description: Additional file 1: Table S1. Encoding and expression profiles of transcripts. Table S2. Expression profiles of phosphatase subunit genes. Table S3. Encoding and expression profiles of transcripts. Gene symbol denotes the presence of transcripts variation in the names supplied with dash followed by number of (minor expressed) splice isoform.
DOI: 10.6084/m9.figshare.12037869
title: thrombin_trajs.tar.gz

description: for analysing a protein-ligand binding process of piperidine-thrombin.
DOI: 10.6084/m9.figshare.12037734
title: Emulated ground temperature data by 1km grid in the Tokyo metropolitan area

description: This dataset records emulated ground temperatures at 13:00 in each day between Augus 1 and September 30, 2013. The target area is the Tokyo metropolitan area, and the temperatures by 1 km grids are emulated. See Murakami et al. (2020) for further detail.<br>Variables- px : Longitude- py : Latitude- gtemp: Ground temperature at 13:00 on in degrees<br>Murakami, D., Peters, G.W., Matsui, T., Yamagata, Y. (2020) Spatiotemporal analysis of urban heatwaves using Tukey g-and-h random field models, ArXiv.
DOI: 10.6084/m9.figshare.12037740
title: Copy of Summary_Twitchell Sherman graph for report.xlsx

description: Sedimentation erosion table data from Twitchell and Sherman Island in the Sacramento San Joaquin Delta.<br>
DOI: 10.6084/m9.figshare.12037869.v1
title: thrombin_trajs.tar.gz

description: for analysing a protein-ligand binding process of piperidine-thrombin.
DOI: 10.6084/m9.figshare.12037722
title: VT20200325.Covid19ImpactedPersonally.png

description: Johns Hopkins GitHub Data
DOI: 10.6084/m9.figshare.12037734.v2
title: Emulated ground temperature data by 1km grid in the Tokyo metropolitan area

description: This dataset records emulated ground temperatures at 13:00 in each day between Augus 1 and September 30, 2013. The target area is the Tokyo metropolitan area, and the temperatures by 1 km grids are emulated. See Murakami et al. (2020) for further detail.<br>Variables- px : Longitude- py : Latitude- gtemp: Ground temperature at 13:00 on in degrees<br>Murakami, D., Peters, G.W., Matsui, T., Yamagata, Y. (2020) Spatiotemporal analysis of urban heatwaves using Tukey g-and-h random field models, ArXiv.
DOI: 10.6084/m9.figshare.12037719
title: VT20200326.Covid19ImpactedPersonally.png

description: Johns Hopkins GitHub data
DOI: 10.6084/m9.figshare.12037734.v1
title: Emulated ground temperature data by 1km grid in the Tokyo metropolitan area

description: This dataset records emulated ground temperatures at 13:00 in each day between Augus 1 and September 30, 2013. The target area is the Tokyo metropolitan area, and the temperatures by 1 km grids are emulated. See Murakami et al. (2020) for further detail.<br>Murakami, D., Peters, G.W., Matsui, T., Yamagata, Y. (2020) Spatiotemporal analysis of urban heatwaves using Tukey g-and-h random field models, ArXiv.
DOI: 10.6084/m9.figshare.12037719.v1
title: VT20200326.Covid19ImpactedPersonally.png

description: Johns Hopkins GitHub data
DOI: 10.6084/m9.figshare.12037722.v1
title: VT20200325.Covid19ImpactedPersonally.png

description: Johns Hopkins GitHub Data
DOI: 10.6084/m9.figshare.12037701
title: MCAvsCE

description: This dataset describs a comparative study of two multiplex-PCR kits for the detection of nine respiratory pathogens.
DOI: 10.6084/m9.figshare.12037701.v1
title: MCAvsCE

description: This dataset describs a comparative study of two multiplex-PCR kits for the detection of nine respiratory pathogens.
DOI: 10.6084/m9.figshare.12037638
title: Structural characterization of ulvan polysaccharide from collected and in vitro cultivated Ulva fasciata (Chlorophyta)

description: suporting information for 1H and 13C NMR presented in the article "Structural characterization of ulvan polysaccharide from collected and in vitro cultivated Ulva fasciata (Chlorophyta)"
DOI: 10.6084/m9.figshare.12037638.v1
title: Structural characterization of ulvan polysaccharide from collected and in vitro cultivated Ulva fasciata (Chlorophyta)

description: suporting information for 1H and 13C NMR presented in the article "Structural characterization of ulvan polysaccharide from collected and in vitro cultivated Ulva fasciata (Chlorophyta)"
DOI: 10.6084/m9.figshare.12037599
title: Metadata record for: A clinically and genomically annotated nerve sheath tumor biospecimen repository

description: This dataset contains key characteristics about the data described in the Data Descriptor A clinically and genomically annotated nerve sheath tumor biospecimen repository. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12037599.v1
title: Metadata record for: A clinically and genomically annotated nerve sheath tumor biospecimen repository

description: This dataset contains key characteristics about the data described in the Data Descriptor A clinically and genomically annotated nerve sheath tumor biospecimen repository. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.5522/04/12037521
title: Multi-TI Traditional and BCSFB-ASL in the Lateral Ventricles (n=12)

description: This is the raw imaging data for the experiments 'Multi-TI Traditional and BCSFB-ASL in the Lateral Ventricles (n=12)' from the work 'Non-invasive MRI of Blood-Cerebrospinal Fluid Barrier Function' by Evans <i>et al</i>. <br>The data is in Matlab format. The ASL data is in a 4D array where the first two array elements are the 2D MRI images, the 3rd element is the interleaved control and tagged images (together with the number of repetitions), and the 4th element is the number of inflow times (TI).
DOI: 10.6084/m9.figshare.12037554
title: Diversity-of-Croton-Euphorbiaceae-in-the-Itatiaia-National-Park-Brazil_List of material examined.xlsx

description: List of material examined in the article Diversity of <i>Croton</i> (Euphorbiaceae) in the Itatiaia National Park, Brazil
DOI: 10.5522/04/12037521.v1
title: Multi-TI Traditional and BCSFB-ASL in the Lateral Ventricles (n=12)

description: This is the raw imaging data for the experiments 'Multi-TI Traditional and BCSFB-ASL in the Lateral Ventricles (n=12)' from the work 'Non-invasive MRI of Blood-Cerebrospinal Fluid Barrier Function' by Evans <i>et al</i>. <br>The data is in Matlab format. The ASL data is in a 4D array where the first two array elements are the 2D MRI images, the 3rd element is the interleaved control and tagged images (together with the number of repetitions), and the 4th element is the number of inflow times (TI).
DOI: 10.6084/m9.figshare.12037512
title: Adoption and impact of non-pharmaceutical interventions for COVID-19

description: Supplementary information to: Adoption and impact of non-pharmaceutical interventions for COVID-19. <br>
DOI: 10.6084/m9.figshare.12037512.v1
title: Adoption and impact of non-pharmaceutical interventions for COVID-19

description: Supplementary information to: Adoption and impact of non-pharmaceutical interventions for COVID-19. <br>
DOI: 10.6084/m9.figshare.12037554.v1
title: Diversity-of-Croton-Euphorbiaceae-in-the-Itatiaia-National-Park-Brazil_List of material examined.xlsx

description: List of material examined in the article Diversity of <i>Croton</i> (Euphorbiaceae) in the Itatiaia National Park, Brazil
DOI: 10.6084/m9.figshare.12037197
title: Metadata record for: An annual time series of weekly size-resolved aerosol properties in the megacity of Metro Manila, Philippines

description: This dataset contains key characteristics about the data described in the Data Descriptor An annual time series of weekly size-resolved aerosol properties in the megacity of Metro Manila, Philippines. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.12037197.v1
title: Metadata record for: An annual time series of weekly size-resolved aerosol properties in the megacity of Metro Manila, Philippines

description: This dataset contains key characteristics about the data described in the Data Descriptor An annual time series of weekly size-resolved aerosol properties in the megacity of Metro Manila, Philippines. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.5522/04/12037182
title: Non-Invasive MRI of BCSFB Function: Application to the Ageing Brain

description: This is the raw imaging data for the experiments'Non-Invasive MRI of BCSFB Function: Application to the Ageing Brain (n=24)' from the work 'Non-invasive MRI of Blood-Cerebrospinal Fluid Barrier Function' by Evans <i>et al</i>.<br>The data is in Matlab format. The ASL data is in a 4D array where the first two array elements are the 2D MRI images, the 3rd element is the interleaved control and tagged images (together with the number of repetitions), and the 4th element is the number of inflow times (TI). The TIs used here are 750, 1500, 2750, 4000 and 6500ms.
DOI: 10.6084/m9.figshare.12037155
title: ITS2 sequences generated using ITSp3/ITSu4

description: Fasta file containing the 235 <i>ITS2</i> barcode sequences generated using primer pair ITSp3/ITSu4 and used in statistical analyses. <br><br>Corresponding scientific paper: Timpano EK, Scheible MKR, Meiklejohn KA (2020). Optimization of the second internal transcribed spacer (<i>ITS2</i>) for characterizing land plants from soil. <i>PLoS ONE</i>.
DOI: 10.5522/04/12037182.v1
title: Non-Invasive MRI of BCSFB Function: Application to the Ageing Brain

description: This is the raw imaging data for the experiments'Non-Invasive MRI of BCSFB Function: Application to the Ageing Brain (n=24)' from the work 'Non-invasive MRI of Blood-Cerebrospinal Fluid Barrier Function' by Evans <i>et al</i>.<br>The data is in Matlab format. The ASL data is in a 4D array where the first two array elements are the 2D MRI images, the 3rd element is the interleaved control and tagged images (together with the number of repetitions), and the 4th element is the number of inflow times (TI). The TIs used here are 750, 1500, 2750, 4000 and 6500ms.
DOI: 10.6084/m9.figshare.12036762
title: Immunofluorescence images

description: Raw Images used in our publication for Immunofluorescence Images1_IF_Testis DDX4-NSUN2: Contains 3 biological, 3 technical replicates of DDX4-NSUN2 co-stainings IF scans in mouse testis tissues2_IF-Testis NSUN2-FBL_NSUN7-DDX4_FBL-DDX4_IgG: Contains 3 biological, 3 technical replicates of NSUN2-FBL, NSUN7-DDX4, FBL-DDX4 co-stainings and IgG Control staining IF scans in mouse testis tissues3_IF-Testis NSUN7-DDX4: Contains 3 biological, 3 technical replicates of NSUN7-DDX4 co-stainings IF scans in mouse testis tissues
DOI: 10.6084/m9.figshare.12037155.v1
title: ITS2 sequences generated using ITSp3/ITSu4

description: Fasta file containing the 235 <i>ITS2</i> barcode sequences generated using primer pair ITSp3/ITSu4 and used in statistical analyses. <br><br>Corresponding scientific paper: Timpano EK, Scheible MKR, Meiklejohn KA (2020). Optimization of the second internal transcribed spacer (<i>ITS2</i>) for characterizing land plants from soil. <i>PLoS ONE</i>.
DOI: 10.6084/m9.figshare.12036762.v1
title: Immunofluorescence images

description: Raw Images used in our publication for Immunofluorescence Images1_IF_Testis DDX4-NSUN2: Contains 3 biological, 3 technical replicates of DDX4-NSUN2 co-stainings IF scans in mouse testis tissues2_IF-Testis NSUN2-FBL_NSUN7-DDX4_FBL-DDX4_IgG: Contains 3 biological, 3 technical replicates of NSUN2-FBL, NSUN7-DDX4, FBL-DDX4 co-stainings and IgG Control staining IF scans in mouse testis tissues3_IF-Testis NSUN7-DDX4: Contains 3 biological, 3 technical replicates of NSUN7-DDX4 co-stainings IF scans in mouse testis tissues
DOI: 10.6084/m9.figshare.12034965
title: Benzamidine Trypsin trajectory generated using ACEMD by pyemma.

description: Mirrored from https://www.emma-project.org/v2.0.4/generated/trypsin_benzamidine_hmm.html#trypsin-benzamidine-load-data
DOI: 10.6084/m9.figshare.12034965.v2
title: Benzamidine Trypsin trajectory generated using ACEMD by pyemma.

description: Mirrored from https://www.emma-project.org/v2.0.4/generated/trypsin_benzamidine_hmm.html#trypsin-benzamidine-load-data
DOI: 10.6084/m9.figshare.12034920
title: Fastq-20200326T163421Z-001.zip

description: Raw reads from DNA metabarcoding analysis from excrements of the otters (<i>Lutra lutra</i>) collected in South Italy.
DOI: 10.6084/m9.figshare.12034965.v1
title: Benzamidine Trypsin trajectory generated using ACEMD by pyemma.

description: Mirrored from https://www.emma-project.org/v2.0.4/generated/trypsin_benzamidine_hmm.html#trypsin-benzamidine-load-data
DOI: 10.6084/m9.figshare.12034920.v1
title: Fastq-20200326T163421Z-001.zip

description: Raw reads from DNA metabarcoding analysis from excrements of the otters (<i>Lutra lutra</i>) collected in South Italy.
DOI: 10.6084/m9.figshare.12034848
title: ITS2 sequences generated using ITS2F/ITSp4

description: Fasta file containing the 556 <i>ITS2</i> barcode sequences generated using primer pair ITS2F/ITSp4 and used in statistical analyses. <br><br>Corresponding scientific paper: Timpano EK, Scheible MKR, Meiklejohn KA (2020). Optimization of the second internal transcribed spacer (<i>ITS2</i>) for characterizing land plants from soil. <i>PLoS ONE</i>.
DOI: 10.6084/m9.figshare.12034617
title: pysamstats pileup-based statistics

description: Pileup-based statistics of ONT reads aligned to correspondent Illumina-derived virus genomes<br><br>Della Bartola M.; Byrne S.; Mullins E. Characterization of potato virus Y isolates and assessment of Nanopore sequencing to detect and genotype potato viruses. <i>Viruses</i> 2020<br><br><br>
DOI: 10.6084/m9.figshare.12034608
title: GSH and GSSG in HepG2 cells and isolated mitochondria (LC-MS/MS analysis)

description: Glutathione (GSH) and glutathione disulfide (GSSG) in HepG2 cells and isolated mitochondrial upon lapatinib treatment<br>
DOI: 10.6084/m9.figshare.12034482
title: firm-level trading data (Phase I).csv

description: firm-level emission trading data derived from the European Union Transaction Log.
DOI: 10.6084/m9.figshare.12034503
title: firm-level trading data (Phase II).csv

description: firm-level emission trading data derived from the European Union Transaction Log.
DOI: 10.6084/m9.figshare.12034479
title: firm-level trading data classified in states.xlsx

description: firm-level emission trading data derived from the European Union Transaction Log.
DOI: 10.6084/m9.figshare.12034479.v1
title: firm-level trading data classified in countries.xlsx

description: firm-level emission trading data derived from the European Union Transaction Log.
DOI: 10.6084/m9.figshare.12034410
title: Supplemental Material to Morieri et al. Effectiveness of dulaglutide in the real world and in special populations of type 2 diabetic patients

description: Data Supplement to Morieri et al. JCEM 2020<br>
DOI: 10.6084/m9.figshare.12034353
title: Data for "Mechanisms behind species-specific water economy responses to water level drawdown in peat mosses"

description: <b>Data and meta-files used in publication: Mechanisms behind species-specific water economy responses to water level drawdown in peat mosses, Annals of Botany XX: 1–12, 2020,</b><b>doi: 10.1093/aob/mcaa033, available online at www.academic.oup.com/aob</b>
DOI: 10.6084/m9.figshare.12034410.v1
title: Supplemental Material to Morieri et al. Effectiveness of dulaglutide in the real world and in special populations of type 2 diabetic patients Item

description: Data Supplement to Morieri et al. JCEM 2020<br>
DOI: 10.6084/m9.figshare.12034353.v1
title: Data for "Mechanisms behind species-specific water economy responses to water level drawdown in peat mosses"

description: <b>Data and meta-files used in publication: Mechanisms behind species-specific water economy responses to water level drawdown in peat mosses, Annals of Botany XX: 1–12, 2020,</b><b>doi: 10.1093/aob/mcaa033, available online at www.academic.oup.com/aob</b>
DOI: 10.6084/m9.figshare.12034410.v3
title: Supplemental Material to Morieri et al. Effectiveness of dulaglutide in the real world and in special populations of type 2 diabetic patients

description: Data Supplement to Morieri et al. JCEM 2020<br>
DOI: 10.6084/m9.figshare.12034410.v2
title: Supplemental Material to Morieri et al. Effectiveness of dulaglutide in the real world and in special populations of type 2 diabetic patients

description: Data Supplement to Morieri et al. JCEM 2020<br>
DOI: 10.6084/m9.figshare.12034182
title: Microbial Community Structures in Terrestrial Subsurface Sediments from the Southern Kanto Plain, Japan

description: Microbial community structure reflects the surrounding natural environment and changes to that environment. Although the subsurface at 5–100 m depth is important for human activities and there are potential risks of environmental pollution in this region, there have been only a few reports of subsurface microbial community structures in terrestrial areas. We investigated the diversity and community compositions of <i>Bacteria</i> and <i>Archaea</i> in boring cores collected from various depths at three different sites in the southern Kanto Plain, Japan. The results of 16S rRNA gene amplicon sequencing using MiSeq showed that the microbial community composition varied with the geological unit. <i>Proteobacteria</i> (<i>Alphaproteobacteria</i> and <i>Gammaproteobacteria</i>) were dominant members within sediments accumulated during the Pleistocene in the Musashino Upland. In contrast, <i>Acidobacteria</i> and <i>Chloroflexi</i> characteristically appeared in the Holocene layers of the Arakawa Lowland. These data suggest that the subsurface microbial composition is controlled by the geological features of the sediments.