cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.x2gnzh
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Occurrence evidence"
 ]
 },
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Allactaga sibirica (Forster, 1778)",
 "Year 1972-2022"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0225452-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rw4acb
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xyris madagascariensis Malme"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035238-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5g334h
title: Occurrence Download

description: A dataset containing 82326 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 {
 "or" : [
 "StateProvince is Campeche",
 "StateProvince is Campeche (State)"
 ]
 },
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 82326 records from 154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008087-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y538tw
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Occurrence evidence"
 ]
 },
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Arctonyx albogularis (Blyth, 1853)",
 "Year 1972-2022"
 ]
}

 The dataset includes 15 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0225455-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5k6pb
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Adelphacaridae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 15 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019248-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cizq20
title: Occurrence Download

description: A dataset containing 86403 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "PublishingCountry is Canada",
 "TaxonKey is Meleagris gallopavo Linnaeus, 1758"
 ]
}

 The dataset includes 86403 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012711-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10982394
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Luis Freire García, http://www.wikidata.org/entity/Q12392463. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q12392463
DOI: 10.5281/zenodo.10982395
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Luis Freire García, http://www.wikidata.org/entity/Q12392463. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q12392463
DOI: 10.15468/dl.f86jzc
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lasiomollisia Raitv. & Vesterh."
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0422567-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9t8zsf
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex jankowskii Gorodkov"
 ]
}

 The dataset includes 40 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0121267-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ppgk4
title: Occurrence Download

description: A dataset containing 216 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zea luxurians (Durieu & Asch.) R.M.Bird"
 ]
}

 The dataset includes 216 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016376-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3xbqb4
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bulbophyllum argyropus (Endl.) Rchb.f."
 ]
}

 The dataset includes 56 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0225454-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nhesrs
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trichodiadema stayneri L.Bolus"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019279-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4fod3d
title: Occurrence Download

description: A dataset containing 1358 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-104.50778 21.76887,-104.57301 21.68435,-104.56958 21.5902,-104.54383 21.51996,-104.48718 21.47843,-104.44342 21.45939,-104.36909 21.46282,-104.32669 21.52891,-104.31381 21.60959,-104.30437 21.71087,-104.3284 21.75207,-104.36788 21.77953,-104.3799 21.78554,-104.44856 21.79327,-104.50778 21.76887))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1358 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010145-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6p3mrb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex jiaodongensis Y.M.Zhang & X.D.Chen"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0121274-230224095556074/datasets/export for details.
DOI: 10.15468/dl.mydtth
title: Occurrence Download

description: A dataset containing 178 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "TaxonKey is Calyptorhynchus banksii (Latham, 1790)",
 "Year 1940-1972"
 ]
}

 The dataset includes 178 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0225460-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mk3xbz
title: Occurrence Download

description: A dataset containing 6776436 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Flora von Deutschland (Phanerogamen)"
 ]
}

 The dataset includes 6776436 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047449-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7jr83u
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xyris mexiae Malme"
 ]
}

 The dataset includes 40 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035253-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jfqs3j
title: Occurrence Download

description: A dataset containing 81427 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xiphorhynchus flavigaster Swainson, 1827"
 ]
}

 The dataset includes 81427 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0225520-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wuumcw
title: Occurrence Download

description: A dataset containing 7880 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Setophaga kirtlandii (S.F.Baird, 1852)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7880 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003725-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cvz3k3
title: Occurrence Download

description: A dataset containing 322 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xyris longisepala Kral"
 ]
}

 The dataset includes 322 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035230-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.guvba7
title: Occurrence Download

description: A dataset containing 859019 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Peru",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 859019 records from 927 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0225457-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ddhjo
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "MediaType is Image",
 "TaxonKey is Vitis vinifera L."
 ]
}

 The dataset includes 99 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023113-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8262y
title: Occurrence Download

description: A dataset containing 314 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Peces laguna El Tinije"
 ]
}

 The dataset includes 314 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039976-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sflw9s
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sechium edule (Jacq.) Sw.",
 "Geometry POLYGON((-81.97 -1.95,-81.97 10.91,-61.66 10.91,-61.66 -1.95,-81.97 -1.95))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 42 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004015-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3vyhr
title: Occurrence Download

description: A dataset containing 85273 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-3000.0",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chiroptera"
 ]
}

 The dataset includes 85273 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016661-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dymzun
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agave difformis A.Berger"
 ]
}

 The dataset includes 63 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004015-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.icqqn5
title: Occurrence Download

description: A dataset containing 3403810 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is A global database for the distributions of crop wild relatives"
 ]
}

 The dataset includes 3403810 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027298-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c7hkth
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Corvus splendens Vieillot, 1817",
 "HasCoordinate is true",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 119 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004015-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aaa2qk
title: Occurrence Download

description: A dataset containing 21333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Coleccion de Herpetologia, MZFC-UNAM"
 ]
}

 The dataset includes 21333 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040003-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.duomoa
title: Occurrence Download

description: A dataset containing 234 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trypauchen vagina (Bloch & Schneider, 1801)"
 ]
}

 The dataset includes 234 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004015-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rqevq4
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron ×agastum Balf.fil. & W.W.Sm."
 ]
}

 The dataset includes 69 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012490-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mfkscv
title: Occurrence Download

description: A dataset containing 445 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-90.3148 47.90274,-87.8784 47.90274,-87.8784 49.01548,-90.3148 49.01548,-90.3148 47.90274))",
 "HasGeospatialIssue is false",
 "TaxonKey is Pelecanus Linnaeus, 1758",
 "Year 2022-2022"
 ]
}

 The dataset includes 445 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032512-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pomwck
title: Occurrence Download

description: A dataset containing 147675 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyprinus carpio Linnaeus, 1758"
 ]
}

 The dataset includes 147675 records from 452 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033631-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.426g5f
title: Occurrence Download

description: A dataset containing 631 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Collinsia linearis A.Gray"
 ]
}

 The dataset includes 631 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0142733-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vlpfoo
title: Occurrence Download

description: A dataset containing 2878 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alternanthera brasiliana (L.) Kuntze",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 2878 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004015-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tr4m2t
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-16.23553 17.32673,-17.51377 10.17697,-1.79136 -8.11034,15.84841 -15.14069,23.13441 -0.18522,11.50238 15.28154,-16.23553 17.32673))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dalbergia rugosa Hepper"
 ]
}

 The dataset includes 13 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024000-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15225603
title: Collatz conjecture
DOI: 10.5281/zenodo.15225604
title: Collatz conjecture
DOI: 10.5281/zenodo.13826866
title: Programmable optoelectronic Ising machine for optimization of real-world problems

description: The data and code provided here are used to generate the figures in the manuscript titled "Programmable optoelectronic Ising machine for optimization of real-world problems" and its supplementary materials.
DOI: 10.5281/zenodo.13826867
title: Programmable optoelectronic Ising machine for optimization of real-world problems

description: The data and code provided here are used to generate the figures in the manuscript titled "Programmable optoelectronic Ising machine for optimization of real-world problems" and its supplementary materials.
DOI: 10.5281/zenodo.13848267
title: Re-analysis of chromatin accessibility QTLs from the Kumasaka et al, 2018 study

description: ATAC-seq data from Kumasaka et al, 2018 was processed with the nf-core/atacseq v2.1.2 pipeline using Nextflow v23.09.3. We aligned raw ATAC-seq reads to the GRCh38 reference genome (Homo_sapiens.GRCh38.dna.primary_assembly.fa downloaded from Ensembl) with BWA v0.7.17. We called broad peaks with MACS2 v2.2.7.1 and defined consensus peaks as the union of all peaks that were present in at least 5% of the samples. We then quantified read overlaps with the set of consensus peaks with featureCounts v2.0.1. Finally, we normalised the read counts (counts per million) and then used the inverse normal transformation to standardise the data distribution.

Genotype data for the 91 overlapping samples were downloaded from 1000 Genomes 30x on GRCh38 website. Finally, we used the eQTL-Catalogue/qtlmap v24.01.1 workflow to perform chromatin accessibility QTL analysis. We set cis window size to 200,000 bp and excluded peaks that had less than 25 variants within that window. More details of the association testing workflow can be found here.
DOI: 10.5281/zenodo.13848268
title: Re-analysis of chromatin accessibility QTLs from the Kumasaka et al, 2018 study

description: ATAC-seq data from Kumasaka et al, 2018 was processed with the nf-core/atacseq v2.1.2 pipeline using Nextflow v23.09.3. We aligned raw ATAC-seq reads to the GRCh38 reference genome (Homo_sapiens.GRCh38.dna.primary_assembly.fa downloaded from Ensembl) with BWA v0.7.17. We called broad peaks with MACS2 v2.2.7.1 and defined consensus peaks as the union of all peaks that were present in at least 5% of the samples. We then quantified read overlaps with the set of consensus peaks with featureCounts v2.0.1. Finally, we normalised the read counts (counts per million) and then used the inverse normal transformation to standardise the data distribution.

Genotype data for the 91 overlapping samples were downloaded from 1000 Genomes 30x on GRCh38 website. Finally, we used the eQTL-Catalogue/qtlmap v24.01.1 workflow to perform chromatin accessibility QTL analysis. We set cis window size to 200,000 bp and excluded peaks that had less than 25 variants within that window. More details of the association testing workflow can be found here.
DOI: 10.5281/zenodo.8432925
title: Convertisseur de dates égyptiennes

description: Convertisseur de dates égyptiennes expliqué dans la thèse de doctorat d'Isabelle Goncalves : Pistes et sites du désert Oriental égyptien du Moyen au Nouvel Empire (1990-1077 av. J.-C.) : Évolution des réseaux de circulation et d’exploitation, Université Lumière Lyon 2, 2023.
DOI: 10.5281/zenodo.8432926
title: Convertisseur de dates égyptiennes

description: Convertisseur de dates égyptiennes expliqué dans la thèse de doctorat d'Isabelle Goncalves : Pistes et sites du désert Oriental égyptien du Moyen au Nouvel Empire (1990-1077 av. J.-C.) : Évolution des réseaux de circulation et d’exploitation, Université Lumière Lyon 2, 2023.