cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1139405.09fu
title: SH1139405.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1139406.09fu
title: SH1139406.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1139407.09fu
title: SH1139407.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.6477532
title: Dataset for "Numerical methods for the detection of phase defect structures in excitable media"

description: This archive contains the numerical methods presented in the publication "Numerical methods for the detection of phase defect structures in excitable media" as well as the data sets these methods have been applied on. The Python module for Ithildin (py_ithildin.zip) contains the actual Python source code of those methods. Additional Python scripts have been used to generate the figures in the paper (scripts-pdl-detection.zip). The optical voltage mapping data (optical_*) has been slightly pre-processed (noise reduction, re-scaling, etc). The second variable for the optical data (optical_20200204114234_v.npy) is a delayed version of the first variable. The other files contain simulation results from several finite differences simulations of the mono-domain model. For details, see our paper. <strong>Numerical methods for the detection of phase defect structures in excitable media</strong><br> Kabus D, Arno L, Leenknegt L, Panfilov AV, Dierckx H (2022) Numerical methods for the detection of phase defect structures in excitable media. PLOS ONE 17(7): e0271351. https://doi.org/10.1371/journal.pone.0271351
DOI: 10.5281/zenodo.5785784
title: Dataset for "Numerical methods for the detection of phase defect structures in excitable media"

description: This archive contains the numerical methods presented in the publication "Numerical methods for the detection of phase defect structures in excitable media" as well as the data sets these methods have been applied on. The Python module for Ithildin (py_ithildin.zip) contains the actual Python source code of those methods. Additional Python scripts have been used to generate the figures in the paper (scripts-pdl-detection.zip). The optical voltage mapping data (optical_*) has been slightly pre-processed (noise reduction, re-scaling, etc). The second variable for the optical data (optical_20200204114234_v.npy) is a delayed version of the first variable. The other files contain simulation results from several finite differences simulations of the mono-domain model. For details, see our paper. <strong>Numerical methods for the detection of phase defect structures in excitable media</strong><br> Kabus D, Arno L, Leenknegt L, Panfilov AV, Dierckx H (2022) Numerical methods for the detection of phase defect structures in excitable media. PLOS ONE 17(7): e0271351. https://doi.org/10.1371/journal.pone.0271351
DOI: 10.6084/m9.figshare.14594571
title: Changes in prevalence of Helicobacter pylori in Japan from 2008 to 2018: a repeated cross-sectional study

description: We conducted research to know prevalence of H.pylori in Japanese workers in 2008-2018 with results of antibody test in health check-ups.
DOI: 10.6084/m9.figshare.14594571.v1
title: Changes of Helicobacter pylori incidence in Japan over 11 years, 2008-2018: a retrospective cross-sectional study

description: We conducted research to know prevalence of H.pylori in Japanese workers in 2008-2018 with results of antibody test in health check-ups.
DOI: 10.5281/zenodo.6826345
title: Supplemental Figure S1

description: Figure Supplementary S1, Krutilina et al.
DOI: 10.5281/zenodo.6826344
title: Supplemental Figure S1

description: Figure Supplementary S1, Krutilina et al.
DOI: 10.5281/zenodo.6826349
title: Genetic parentage reconstruction as a practical tool applied to aquaculture and restoration programs for the European flat oyster, Ostrea edulis

description: Preserving and maximizing genetic diversity in conservation programs, including for restocking, are of high importance. The threatened European flat oyster (<em>Ostrea edulis</em>) is currently the subject of several applied conservation and restocking programs, but concerns have been raised over potential negative side effects of these programs, for example due to our limited knowledge about the genetic effects in natural populations of releasing offspring of hatchery origin. Here, we developed a cost-effective, easily applicable and highly reliable method to assess the genetic diversity and parental contributions in flat oyster hatchery production based on analyses of 17 microsatellite loci. We analyzed broodstock and hatchery-produced spat (total n = 289) and compared diversity to that in wild samples of adults and spat from the broodstock source in the Limfjorden (total n = 190). Based on four hatchery tank experiments, we found that five swarming events (larval releases) were characterized by a single maternal and multiple paternal contributions, and that the number of contributing parents varied greatly both among individual tanks, and between swarming events within tank. On average, the effective number of breeders was only one third of the actual broodstock size. Although the broodstock exhibited high genetic variation, the high reproductive skew resulted in produced seed representing only a relatively small subset of this variation. The work demonstrates potential impact of hatchery reared offspring on decreasing genetic diversity in wild populations, but also that genetic monitoring can be integrated in conservation programs to minimize negative effects on restoration and supplementary restocking programs that utilize hatchery reared spats to support natural populations.
DOI: 10.5281/zenodo.6826348
title: Genetic parentage reconstruction as a practical tool applied to aquaculture and restoration programs for the European flat oyster, Ostrea edulis

description: Preserving and maximizing genetic diversity in conservation programs, including for restocking, are of high importance. The threatened European flat oyster (<em>Ostrea edulis</em>) is currently the subject of several applied conservation and restocking programs, but concerns have been raised over potential negative side effects of these programs, for example due to our limited knowledge about the genetic effects in natural populations of releasing offspring of hatchery origin. Here, we developed a cost-effective, easily applicable and highly reliable method to assess the genetic diversity and parental contributions in flat oyster hatchery production based on analyses of 17 microsatellite loci. We analyzed broodstock and hatchery-produced spat (total n = 289) and compared diversity to that in wild samples of adults and spat from the broodstock source in the Limfjorden (total n = 190). Based on four hatchery tank experiments, we found that five swarming events (larval releases) were characterized by a single maternal and multiple paternal contributions, and that the number of contributing parents varied greatly both among individual tanks, and between swarming events within tank. On average, the effective number of breeders was only one third of the actual broodstock size. Although the broodstock exhibited high genetic variation, the high reproductive skew resulted in produced seed representing only a relatively small subset of this variation. The work demonstrates potential impact of hatchery reared offspring on decreasing genetic diversity in wild populations, but also that genetic monitoring can be integrated in conservation programs to minimize negative effects on restoration and supplementary restocking programs that utilize hatchery reared spats to support natural populations.
DOI: 10.5281/zenodo.6826420
title: LIANA

description: Data Used in LIANA's vignettes. Datasets include: - Processed SingleCellExperiment object with ~14000 PBMCs from 8 donors, each before and after IFN-beta stimulation. Originally published at https://pubmed.ncbi.nlm.nih.gov/29227470/ (GSE96583); obtained from: https://scelvis.readthedocs.io/en/latest/tutorial_analysis.html. Also, ligand-receptor inference results per sample.
DOI: 10.5281/zenodo.6826419
title: LIANA

description: Data Used in LIANA's vignettes. Datasets include: - Processed SingleCellExperiment object with ~14000 PBMCs from 8 donors, each before and after IFN-beta stimulation. Originally published at https://pubmed.ncbi.nlm.nih.gov/29227470/ (GSE96583); obtained from: https://scelvis.readthedocs.io/en/latest/tutorial_analysis.html. Also, ligand-receptor inference results per sample.
DOI: 10.22008/fk2/vkxjy7/jtqcwd
title: T6b_report Final revision 2.pdf

description: The report is the final version (revision 2) issued in Marts 2017 and replaces previous issued T6a reports and T6b (revision 0).
DOI: 10.22008/fk2/vkxjy7
title: Overview of shale layers characteristics in Europe relevant for assessment of unconventional resources

description: This report is prepared by Niels H. Schovsbo with contributions from Karen L. Anthonsen, Christian B. Pedersen and Lisbeth Tougaard, all from the Geological Survey of Denmark and Greenland (GEUS) as part of the EUOGA study (EU Unconventional Oil and Gas Assessment) commissioned by JRC-IET.
DOI: 10.6084/m9.figshare.20297139
title: Supplementary Material for: Impact of Social Isolation on the Physical and Mental Health of Older Adults: A Follow-Up Study at the Apex of the COVID-19 Pandemic in Brazil

description: <b><i>Introduction:</i></b> The COVID-19 pandemic has affected people’s lives and caused changes in habits. The World Health Organization recommends social isolation as a way of minimizing the risk of contagion of the disease. <b><i>Objective:</i></b> The aim of the study was to assess the impact of social isolation due to COVID-19 pandemic on the physical and mental health of older adults and to investigate how anthropometric, functional, and clinical aspects are associated with this process. <b><i>Methods:</i></b> Fifty healthy older adults were followed-up during 5 months. The subjects had their physical and mental health assessed during social isolation (pre-vaccine situation) and after the opening of stores and activities in the municipality (post-vaccine situation). Physical evaluation was performed using the 30-s sit and stand test. Participants’ mental health was assessed with the Geriatric Depression Scale and the Loneliness Index. In this methodological design, muscle strength, depressive symptoms, and loneliness index were subject to pre-post analyses. In addition, these variables were included as outcomes in linear regression models. Participants’ anthropometric, functional, and clinical factors were included as predictors of the statistical model. <b><i>Results:</i></b> Participants’ scores at baseline were consistent with mild depressive symptoms and low loneliness. The muscle strength of the subjects was appropriate to their ages. After 5 months of social isolation, all variables declined, but with statistical significance only for depressive symptoms (<i>p</i> = 0.017, effect size of 0.11). Anthropometric, functional, and clinical factors explained 42.8% of depressive symptoms, 22.3% of loneliness, and 30.2% of muscle strength in the elderly. <b><i>Discussion/Conclusion:</i></b> Older adults presented baseline scores consistent with mild depressive symptoms and low loneliness. The muscular strength of the subjects was appropriate for their ages. After 5 months of social isolation, all variables declined. Anthropometric, functional, and clinical factors explained a substantial part of the depressive symptoms, loneliness, and muscular strength in the elderly. Health care professionals should be aware of performing a wide assessment in subjects’ lives to ensure better health status.
DOI: 10.5522/04/20202161
title: An investigation of the collaboration between the NHS and the third sector organizations

description: These are the interview transcriptions for the cross-sectoral collaboration projects
DOI: 10.5522/04/20202161.v1
title: An investigation of the collaboration between the NHS and the third sector organizations

description: These are the interview transcriptions for the cross-sectoral collaboration projects
DOI: 10.15468/dl.v7rgty
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Cis coriaceus Baudi, 1873",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103851-240626123714530/datasets/export for details.
DOI: 10.15468/dl.k83k7s
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Tenuiphantes drenskyi (van Helsdingen, 1977)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103852-240626123714530/datasets/export for details.
DOI: 10.15468/dl.9tdtsz
title: Occurrence Download

description: A dataset containing 259 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Geophilus electricus Linnaeus, 1758",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 259 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103850-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9259491
title: Forex Exchange Rates Since 2004 (Updated Daily)
DOI: 10.15468/dl.5pkj3z
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Donus multifidus (Israelson, 1984))",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103854-240626123714530/datasets/export for details.
DOI: 10.15468/dl.tg24ec
title: Occurrence Download

description: A dataset containing 7287 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Amanita muscaria var. muscaria"
 ]
}

 The dataset includes 7287 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103853-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.82cyfk
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Tenuiphantes canariensis (Wunderlich, 1987)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103857-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jwv29y
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Cis multidentatus (Pic, 1917)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103860-240626123714530/datasets/export for details.
DOI: 10.15468/dl.qdbthp
title: Occurrence Download

description: A dataset containing 205 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hynobius yiwuensis Cai, 1985"
 ]
}

 The dataset includes 205 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103858-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uguj5e
title: Occurrence Download

description: A dataset containing 677 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syzygium jambos (L.) Alston",
 "Country is Brazil",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 677 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103859-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ng9q8v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Geophilus antecribellatus Verhoeff, 1898",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103861-240626123714530/datasets/export for details.
DOI: 10.48432/tpgess
title: LiDAR survey on 1005 hectares in Fazenda Tanguro, Mato Grosso, Brazil, 2021.

description: The LiDAR data Fanzenda Tanguro (TAN_A01_2021_LiDAR) refers to the survey carried out in Mato Grosso state, Brazil. The data were collected under the project Sustainable Landscapes, a project supported by the United States Agency for International Development (USAID) and US Department of State. The United States Forest Service working in collaboration with the Brazilian Agricultural Research Corporation (Embrapa) have made possible the provision of high accuracy LiDAR data aiming at developing new methods and generating knowledge in the field. This dataset contains: a. Classified LAS formatted point cloud data – compressed LAS files: LAZ format (vendor delivered); b. Map of LiDAR coverage area and block boundaries; “Data were acquired by the Sustainable Landscapes Brazil project supported by the Brazilian Agricultural Research Corporation (Embrapa), the US Forest Service, USAID and the US Department of State."
DOI: 10.21954/ou.rd.26525905
title: Mars Mesoscale Climate Model simulations centred on Lyot crater, with varied orbital parameters and ice sources

description: This dataset contains simulation output of the mesoscale atmospheric state of Lyot crater on Mars over the periods specified in Table 1 using the Mars Mesoscale Model (MMM) used at the Open University. Lyot is a topographically distinctive feature in the northern plains whose interior experiences statistically different conditions compared to its surroundings, impacting on the site's overall environment.This output is useful as reference small-scale Martian atmospheres at the specific location of Lyot crater in the northern lowlands, undertaken with varying orbital parameters (obliquity, eccentricity and time of perihelion) and ice sources, focussing on the water cycle.Further details on this dataset can be found in the MMM-ORDO-reference-manual.pdf document .