cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1133850.10fu
title: SH1133850.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1133852.10fu
title: SH1133852.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.ie5ksz
title: Occurrence Download

description: A dataset containing 1532 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myiothlypis conspicillata (Salvin & Godman, 1880)"
 ]
}

 The dataset includes 1532 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028768-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zcux5e
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ambrosia tomentosa Nutt.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 70 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0162455-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qjvfhj
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gaultheria japonica (A.Gray) Sleumer"
 ]
}

 The dataset includes 196 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010012-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3vc9ap
title: Occurrence Download

description: A dataset containing 827133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Cactaceae"
 ]
}

 The dataset includes 827133 records from 1246 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007233-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oqpwdw
title: Occurrence Download

description: A dataset containing 40128 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Month is January",
 "TaxonKey is Meleagris gallopavo Linnaeus, 1758"
 ]
}

 The dataset includes 40128 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028770-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zbnhj
title: Occurrence Download

description: A dataset containing 192920 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.34_1",
 "TaxonKey is Sialia Swainson, 1827"
 ]
}

 The dataset includes 192920 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0223359-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yqp87w
title: Occurrence Download

description: A dataset containing 2449 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Anthreptes longuemarei (Lesson, 1831)"
 ]
}

 The dataset includes 2449 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010011-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25hjgu
title: Occurrence Download

description: A dataset containing 71171 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Festuca bromoides L."
 ]
}

 The dataset includes 71171 records from 1377 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010029-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.1.4021.2963
title: COMPENSATION MANAGEMENT AND WELFARE MEASURE INFLUENCING JOB SATISFACTION – A STUDY WITH REFERENCE TO BSNL, MADURAI SSA
DOI: 10.15472/twjifg
title: Biomonitoreo de aves para la Ecoreserva La Tribuna (Neiva-Huila) - Proyecto FIBRAS

description: Bajo el marco del convenio Fibras No. 15-199, entre el Instituto de Investigación de Recursos Biológicos Alexander von Humboldt y ECOPETROL S.A.S se llevó a cabo un monitoreo biológico y genético de insectos (Coleoptera, Diptera, Hemiptera, Hymenoptera y Lepidoptera), macroinvertebrados acuáticos, aves, mamíferos, plantas y hongosabo, en la Ecoreserva La Tribuna localizada en el municipio de Huila en el departamento del Huila. El monitoreo se llevó a cabo por estudiantes de diferentes partes del país y biomonitores (personas de la región) entre mayo 2021 y junio 2022. El presente conjunto de datos contiene un total de 56 registros biológicos del grupo taxonómico aves, distribuido en 11 familias, 34 géneros y 35 especies.
DOI: 10.15468/dl.rheujg
title: Occurrence Download

description: A dataset containing 7621748 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico"
 ]
}

 The dataset includes 7621748 records from 1953 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044298-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28760978
title: Supplementary Material for: Carboplatin-Cyclophosphamide or Paclitaxel without or with Bevacizumab as First-Line Treatment for Metastatic Triple-Negative Breast Cancer (BOOG 2013-01)

description: <b><i>Background:</i></b> The addition of bevacizumab to chemotherapy conferred a modest progression-free survival (PFS) benefit in metastatic triple-negative breast cancer (mTNBC). However, no overall survival (OS) benefit has been reported. Also, its combination with carboplatin-cyclophosphamide (CC) has never been investigated. <b><i>Methods:</i></b> The Triple-B study is a multicenter, randomized phase IIb trial that aims to prospectively validate predictive biomarkers, including baseline plasma vascular endothelial growth factor receptor-2 (pVEGFR-2), for bevacizumab benefit. mTNBC patients were randomized between CC and paclitaxel (P) without or with bevacizumab (CC ± B or P ± B). Here we report on a preplanned safety and preliminary efficacy analysis after the first 12 patients had been treated with CC+B and on the predictive value of pVEGFR-2. <b><i>Results:</i></b> In 58 patients, the median follow-up was 22.1 months. Toxicity was manageable and consistent with what was known for each agent separately. There was a trend toward a prolonged PFS with bevacizumab compared to chemotherapy only (7.0 vs. 5.2 months; adjusted HR = 0.60; 95% CI 0.33–1.08; <i>p</i> = 0.09), but there was no effect on OS. In this small study, pVEGFR-2 concentration did not predict a bevacizumab PFS benefit. Both the intention-to-treat analysis and the per-protocol analysis did not yield a significant treatment-by-biomarker test for interaction (<i>p</i><sub>interaction</sub> = 0.69). <b><i>Conclusions:</i></b>CC and CC+B are safe first-line regimens for mTNBC and the side effects are consistent with those known for each individual agent. pVEGFR-2 concentration did not predict a bevacizumab PFS benefit.
DOI: 10.6084/m9.figshare.28760978.v1
title: Supplementary Material for: Carboplatin-Cyclophosphamide or Paclitaxel without or with Bevacizumab as First-Line Treatment for Metastatic Triple-Negative Breast Cancer (BOOG 2013-01)

description: <b><i>Background:</i></b> The addition of bevacizumab to chemotherapy conferred a modest progression-free survival (PFS) benefit in metastatic triple-negative breast cancer (mTNBC). However, no overall survival (OS) benefit has been reported. Also, its combination with carboplatin-cyclophosphamide (CC) has never been investigated. <b><i>Methods:</i></b> The Triple-B study is a multicenter, randomized phase IIb trial that aims to prospectively validate predictive biomarkers, including baseline plasma vascular endothelial growth factor receptor-2 (pVEGFR-2), for bevacizumab benefit. mTNBC patients were randomized between CC and paclitaxel (P) without or with bevacizumab (CC ± B or P ± B). Here we report on a preplanned safety and preliminary efficacy analysis after the first 12 patients had been treated with CC+B and on the predictive value of pVEGFR-2. <b><i>Results:</i></b> In 58 patients, the median follow-up was 22.1 months. Toxicity was manageable and consistent with what was known for each agent separately. There was a trend toward a prolonged PFS with bevacizumab compared to chemotherapy only (7.0 vs. 5.2 months; adjusted HR = 0.60; 95% CI 0.33–1.08; <i>p</i> = 0.09), but there was no effect on OS. In this small study, pVEGFR-2 concentration did not predict a bevacizumab PFS benefit. Both the intention-to-treat analysis and the per-protocol analysis did not yield a significant treatment-by-biomarker test for interaction (<i>p</i><sub>interaction</sub> = 0.69). <b><i>Conclusions:</i></b>CC and CC+B are safe first-line regimens for mTNBC and the side effects are consistent with those known for each individual agent. pVEGFR-2 concentration did not predict a bevacizumab PFS benefit.
DOI: 10.6084/m9.figshare.28760981.v1
title: Supplementary Material for: Association between microbiome dysbiosis and postoperative disorders before and after gastrectomy

description: Introduction. Gastrectomy considerably affects the gut microbiome; however, the association between dysbiosis and post-gastrectomy syndrome remains to be explored. This study prospectively explored fecal gut microbiota alterations before and 3 months after gastrectomy, investigating their potential association with weight loss.
Methods. The gut microbiome of 21 patients with gastric cancer scheduled for gastrectomy in April–October 2022 was analyzed using 16S rRNA gene Next-Generation Sequencing. Their microbiome profiles were compared to those of healthy controls. Bacterial taxa demonstrating significant changes were determined using the Linear Discriminant Analysis Effect Size algorithm and further analyzed for their relationship with weight loss in the gastrectomy cohort.
Results. Postoperative complications (≥grade 2) were observed in 14.3% of patients. Postoperative weight loss was －10.9%, with the following breakdown: distal (－7.0%), total (－13.5%), and proximal (－14.0%) gastrectomy (P = 0.003). Microbiota analysis demonstrated a significant incline in the abundance of the Streptococcus salivarius group and a decline in Bacteroides uniformis in patients with gastric cancer compared to healthy controls. The S. salivarius group exhibited a further increase, while B. uniformis showed signs of recovery after gastrectomy. Additionally, 5α-reductase gene levels, reported to decrease as several cancers progress, were found to elevate post-surgery. Furthermore, patients experiencing greater weight loss showed a significant reduction in Faecalibacterium prausnitzii levels, while lower serum prealbumin and zinc levels were associated with the abundance of Escherichia coli.
Conclusion. Gastrectomy significantly alters the gut microbiome. Supporting microbiome health with prebiotics may help alleviate postoperative issues and improve patients' quality of life.
DOI: 10.6084/m9.figshare.28760984
title: Supplementary Material for: Renal ischemia induces ER-stress and impairs the reparative potency of scattered tubular-like cells

description: Background: CD24+/CD133+ scattered tubular-like cells (STCs) are surviving renal cells that acquire progenitor-like characteristics to repair other damaged kidney cells. Renal artery stenosis (RAS) impairs the reparative capacity of STCs, but the underlying mechanisms remain unknown. STCs contain abundant endoplasmic reticulum (ER), but its capacity to fold proteins could become saturated (ER-stress), leading to STC dysfunction. We hypothesized that RAS alters the expression of genes implicated in ER-stress in swine STCs. Methods: STCs were harvested from pig kidneys after 10 weeks of RAS or sham (n=6 each) and expression of ER-stress genes was assessed using mRNA-seq (n=3 each). To elucidate mechanisms regulating ER-stress genes in RAS-STCs, integrated mRNA-seq/microRNA (miRNA)-seq and transcription factor (TF) prediction analysis were performed. STC ER-stress was assessed in vitro using western blotting, serial block-face electron microscopy, and mass-spectrometry. The involvement of ER-stress in regulating the STC-protective effects was also assessed in vitro by their capacity to improve viability of injured human tubular epithelial cells. Results: RAS pigs developed significant renal dysfunction. mRNA-seq identified 25 ER-stress genes upregulated and 30 downregulated in RAS-STCs versus Normal-STCs. miRNAs were found to target over a third of all differentially expressed ER-stress genes, and almost half of genes encoding for the top 50 TFs involved in regulation of ER-stress genes were dysregulated in RAS-STCs. RAS-STCs exhibited higher ER-stress compared to Normal-STCs, reflected in significant ER dilation and formation of ER-mitochondria contacts, and increased levels of ER-stress-related amino acids. Importantly, ER-stress inhibition improved the reparative capacity of RAS-STCs in vitro. Conclusion: Renal ischemia alters expression of ER-stress-related genes in swine STCs, likely through post-transcriptional- and TF-regulatory mechanisms, which induces ER-stress and impairs their reparative potency. These alterations may limit the potential of STCs to repair damaged kidneys in subjects with RAS.
DOI: 10.3535/nyh-051-ajg
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fzp-4p2-0n5
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/svz-p1x-6c1
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xzm-682j
title: Transect-rapport 1205: Archeologisch Bureauonderzoek. Spijkenisse, Onderhoud N218, Gemeente Nissewaard (ZH)

description: &lt;p&gt;In maart 2017 is een archeologisch bureauonderzoek (BO) uitgevoerd in een plangebied aan de N218 in Spijkenisse (gemeente Nissewaard). De aanleiding voor het onderzoek is het voornemen om grootschalig onderhoud aan de weg uit te voeren. In het kader van de onderbouwing van de vergunningaanvraag voor de onderhoudswerkzaamheden is een archeologisch onderzoek noodzakelijk. Vanuit de bestemmingsplannen Geervliet (2012), Halfweg-Molenwatering (2013) en Buitengebied West (2016) bestaat voor het plangebied een archeologische onderzoeksplicht. De reden hiervoor is dat bij de voorgenomen ingreep dermate grondverzet zal plaatsvinden, dat de oorspronkelijke bodem - en eventueel aanwezige archeologische resten - in het gebied kunnen worden verstoord. Dit rapport beschrijft de resultaten van een archeologisch vooronderzoek in het plangebied en voorziet in die plicht. Conclusie Binnen het plangebied is sprake van meerdere archeologische niveaus: • Een groot gedeelte van het plangebied ligt in een terrein van zeer hoge archeologische waarde waar sporen van bewoning, begraving, ontwikkeling en de inrichting van het landschap uit de periode Midden-IJzertijd - Late-Middeleeuwen zijn aangetroffen. Dit terrein ligt grotendeels op kreekafzettingen die behoren tot de Duinkerke I fase. Ook buiten dit terrein van archeologische waarde worden op de kreekafzettingen resten en/of sporen uit de periodes IJzertijd, Romeinse tijd en Middeleeuwen verwacht. De exacte diepteligging van deze afzettingen is niet bekend. • Verder heeft het plangebied een hoge verwachting voor de Midden-IJzertijd in de top van het veen, die vanaf 0,9 m –Mv aanwezig kan zijn. Daar waar geulen gevormd zijn ten tijde dat ook de Duinkerke I afzettingen zijn gevormd, kan het veen al zijn geërodeerd. • Vanaf de 12e eeuw zijn de afzettingen van Duinkerke III afgezet bovenop het veen en werd de omgeving van het plangebied ontgonnen. Deze afzettingen kunnen tot aan het maaiveld aanwezig zijn en hierin worden vooral ter plaatse van de historische weg in het plangebied resten uit de Late-Middeleeuwen en Nieuwe Tijd verwacht. • Resten van bewoning uit de Late-Middeleeuwen worden op grond van historisch kaartmateriaal niet binnen het plangebied verwacht. Het is niet bekend in hoeverre de bodem verstoord is door vroegere en huidige wegen en de voormalige trambaan.&lt;/p&gt;
DOI: 10.3535/b41-b2w-wqr
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/evz-dtw-p0y
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kkb-zb3-pxc
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xzm-7hzh
title: Een archeologisch bureau-onderzoek en inventariserend veldonderzoek door middel van boringen op het terrein aan de Putterweg 76 te Garderen, gemeente Barneveld (Gld)

description: &lt;p&gt;De onderzoekslocatie ligt op de Veluwe in een trechtervormig droogdal. De onderzoekslocatie heeft een middelhoge trefkans op archeologica uit de periode Laat-Paleolithicum – Nieuwe Tijd. Op de onderzoekslocatie zijn intacte holtpodzolgrondenaangetroffen. In de zeefresiduen van de genomen monsters zijn geen archeologische resten waargenomen. Er is ter plaatse van de nieuwe te bouwen bungalows waarschijnlijk dan ook geen sprake van een archeologische vindplaats.&lt;br&gt;Vanuit archeologisch oogpunt zijn er geen bezwaren voor de nieuwbouw van de bungalows. Een archeologisch vervolgonderzoek is daarom niet noodzakelijk.&lt;/p&gt;
description: Issued: 14 september 2009
DOI: 10.3535/sxn-rt7-h6d
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z00-j95-2dg
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5jw-wsn-n96
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hhk-mcn-3ln
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wj9-q9y-bz1
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jp2-sce-vld
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y8j-0rn-b4c
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xzm-8pbc
title: PAN-00017561 - Roman horse gear strap terminal group A2

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00017561&lt;/p&gt;
description: Modified: 2020-06-09T09:03:15+02:00
DOI: 10.3535/ctc-r9j-fxp
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/496-fag-wd8
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5zf-6d8-7a6
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/318-e09-rpy
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cpm-2ba-ewk
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.