cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7502285.v2
title: Climate and synchrony with conspecifics determine the effects of flowering phenology on reproductive success in <i>Silene acaulis</i>

description: Changes in flowering phenology resulting from climate change could impact individual plant fitness and population viability. Flowering phenology can mediate plant reproductive success in several ways, including pollinator interactions, flowering synchrony with conspecifics, and timing of suitable abiotic conditions. We explored factors that control phenology and reproductive success for an alpine cushion plant, <i>Silene acaulis</i>, across two years and four sites, totaling 1,123 plants, in Colorado, USA. We investigated relationships between flowering time, flowering synchrony, and reproductive success with local abiotic conditions and pollinator behavior. Mean flowering phenology was strongly correlated with the timing of snowmelt across sites and years. Relative to mean flowering times, earlier flowering plants generally produced more flowers and experienced greater soil moisture during flowering but reduced synchrony with conspecifics. Fruit set tended to increase with greater soil moisture, synchrony during flowering, and earlier flowering times. Pollinator visitation increased with local <i>Silene</i> flower density. Earlier snowmelt and drier conditions later in the season favor earlier flowering, but these effects are partially counteracted by the positive effects of synchrony, perhaps because of changes in pollinator visitation. Overall, while both biotic and abiotic effects influence reproductive success, late-season drought may outweigh the benefits of flowering synchrony to increasingly favor earlier flowering.
DOI: 10.7284/114398
title: Fluorometer data collected during research cruise KN216-03 using a WET Labs WETStar instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7502258
title: Mongolian Saiga PPRV pathology data

description: Result of laboratory and histo-pathology testing of Mongolian saiga samples obtained during 2017 PPRV outbreak in Mongolia
DOI: 10.6084/m9.figshare.7502258.v1
title: Mongolian Saiga PPRV pathology data

description: Result of laboratory and histo-pathology testing of Mongolian saiga samples obtained during 2017 PPRV outbreak in Mongolia
DOI: 10.7284/114397
title: GNSS (Global Navigation Satellite System) data collected during research cruise KN216-03 using a C&C C-Nav 2000 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7502252
title: Distance sampling transect surveys for Mongolian saiga

description: Mongolian saiga distance sampling transect data for survey in January, March and May 2017 , and April 2018
DOI: 10.7284/114394
title: Meteorological Station data collected during research cruise KN216-03 using a Vaisala WXT520 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7502252.v1
title: Distance sampling transect surveys for Mongolian saiga

description: Mongolian saiga distance sampling transect data for survey in January, March and May 2017 , and April 2018
DOI: 10.6084/m9.figshare.7502027
title: Suport Information. Zika virus: epidemiological surveillance of the Mexican Institute of Social Security

description: S1 Fig. Algorithm of laboratory sample in the epidemiological surveillance of Zika, in nonpregant persons, Mexico 2016.<br><br>S1. Table A. Cumulative incidence of cases suspected of Zika virus disease, IMSS 2016.<br><br> S1. Table B. Characteristics of Zika cases in the Mexican Institute of Social Security, 2016<br>S1 Table C. Number of cases Positive, Negative, Notificade, positivity and estimated cases of Zika by State and epidemiological week IMSS 2016<br><br><br>
DOI: 10.7284/114400
title: Meteorological Station data collected during research cruise KN216-03 using a Vaisala WXT520 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114396
title: Multibeam Echosounder data collected during research cruise KN216-03 using a SeaBeam 3012-P1 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7502027.v1
title: Zika virus: epidemiological surveillance of the Mexican Institute of Social Security

description: Appendix
DOI: 10.7284/114401
title: Radiometer data collected during research cruise KN216-03 using a Eppley PIR instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7502027.v2
title: S1. Zika virus: epidemiological surveillance of the Mexican Institute of Social Security

description: S1 Characteristics of Zika cases in the Mexican Institute of Social Security, 2016
DOI: 10.6084/m9.figshare.7502027.v3
title: S1. Zika virus: epidemiological surveillance of the Mexican Institute of Social Security

description: S1 Characteristics of Zika cases in the Mexican Institute of Social Security, 2016
DOI: 10.7284/114402
title: Radiometer data collected during research cruise KN216-03 using a Eppley PSP instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114403
title: Water Temperature data collected during research cruise KN216-03 using a Sea-Bird SBE-48 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114399
title: TSG (Thermosalinograph) data collected during research cruise KN216-03 using a Sea-Bird SBE-45 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7502027.v6
title: Suport Information. Zika virus: epidemiological surveillance of the Mexican Institute of Social Security

description: S1. Table 1. Characteristics of Zika cases in the Mexican Institute of Social Security, 2016 S1. Table 2. Number of cases Positive, Negative, Notificade, positivity and estimated cases of Zika by State and epidemiological week IMSS 2016.<br>S1 Table 3. Cumulative incidence of cases suspected of Zika virus disease, IMSS 2016.<br><br>S2 Fig 1. Algorithm of laboratory sample in the epidemiological surveillance of Zika, in nonpregant persons, Mexico 2016.<br>
DOI: 10.7284/114407
title: Multiplexed data collected during research cruise KN217 using a WHOI Calliope instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7501121
title: predicted_trait_data.csv

description: Trait data used in our analyses. Data included trait values that could be directly associated to taxa in our study based on matching Latin binomials, and trait value estimates based on hidden state prediction using weighted square-change parsimony. Because we converted all trait values to numeric (e.g., Gram-negative = 0 and Gram-positive = 1), state predictions for initially discrete traits were allowed to be fractional (e.g., a Gram-positive score of 0.5), reflecting their probabilistic uncertainty.
DOI: 10.6084/m9.figshare.7502027.v7
title: Suport Information. Zika virus: epidemiological surveillance of the Mexican Institute of Social Security

description: S1. Table 1. Characteristics of Zika cases in the Mexican Institute of Social Security, 2016 S1. Table 2. Number of cases Positive, Negative, Notificade, positivity and estimated cases of Zika by State and epidemiological week IMSS 2016.<br>S1 Table 3. Cumulative incidence of cases suspected of Zika virus disease, IMSS 2016.<br><br>S2 Fig 1. Algorithm of laboratory sample in the epidemiological surveillance of Zika, in nonpregant persons, Mexico 2016.<br>
DOI: 10.6084/m9.figshare.7501001
title: curated_trait_data.csv

description: Trait data mined from literature and online data repositories. Trait data derived from the sources listed in Table 1 with Latin binomials that matched either those from the SILVA-based taxonomic identifications of OTUs found in infant gut microbiome samples, or from type specimens in the 132 release of the Living Tree Project. When observations existed for the same taxon across more than one data source, means were used.
DOI: 10.7284/114404
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise KN217 using a Hawaii UHDAS instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7502027.v8
title: Suport Information. Zika virus: epidemiological surveillance of the Mexican Institute of Social Security

description: S1 Fig. Algorithm of laboratory sample in the epidemiological surveillance of Zika, in nonpregant persons, Mexico 2016.<br><br>S1. Table 1. Cumulative incidence of cases suspected of Zika virus disease, IMSS 2016.<br><br> S1. Table 2. Characteristics of Zika cases in the Mexican Institute of Social Security, 2016<br>S1 Table 3. Number of cases Positive, Negative, Notificade, positivity and estimated cases of Zika by State and epidemiological week IMSS 2016<br><br><br>
DOI: 10.6084/m9.figshare.7501121.v1
title: predicted_trait_data.csv

description: Trait data used in our analyses. Data included trait values that could be directly associated to taxa in our study based on matching Latin binomials, and trait value estimates based on hidden state prediction using weighted square-change parsimony. Because we converted all trait values to numeric (e.g., Gram-negative = 0 and Gram-positive = 1), state predictions for initially discrete traits were allowed to be fractional (e.g., a Gram-positive score of 0.5), reflecting their probabilistic uncertainty.
DOI: 10.7284/114405
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise KN217 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7500422
title: SILVA_taxonomy.csv

description: SILVA-based taxonomic identities of infant microbiome OTUs. Representative sequences of operational taxonomic units (OTUs) from infant microbiome samples were mapped to the SILVA v123 database using USEARCH version 10.0.240 to assign potential taxonomic identities. Data include all 3311 OTUs identified in our pipeline, before any were dropped due to rarefying.
DOI: 10.6084/m9.figshare.7500563
title: LTP_succession.tree

description: Phylogenetic tree of OTUs from this study and the Living Tree Project. A phylogenetic tree in Newick format with tips for the 3,311 operational taxonomic units (OTUs) identified in the infant gut microbiome samples from this study identified using a USEARCH pipeline, and the 13,900 OTUs from the 132 release of the Living Tree Project. The topology of the tree reflects percent sequence similarity among taxa in the 16S rRNA V4 region, and was generated using agglomerative clustering of a distance matrix based on the U-sort heuristic.
DOI: 10.6084/m9.figshare.7500563.v1
title: LTP_succession.tree

description: Phylogenetic tree of OTUs from this study and the Living Tree Project. A phylogenetic tree in Newick format with tips for the 3,311 operational taxonomic units (OTUs) identified in the infant gut microbiome samples from this study identified using a USEARCH pipeline, and the 13,900 OTUs from the 132 release of the Living Tree Project. The topology of the tree reflects percent sequence similarity among taxa in the 16S rRNA V4 region, and was generated using agglomerative clustering of a distance matrix based on the U-sort heuristic.
DOI: 10.7284/114408
title: Expendable Probe data collected during research cruise KN217 using a Sippican MK21 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7499525
title: metadata.csv

description: Infant metadata. Information for each infant subject includes (1) the approximate total number of days of antibiotic treatment, assuming the duration of any given antibiotic treatment was seven days unless otherwise noted, (2) the country of origin, (3) the mode of delivery, (4) the treatment group assignment used in this study, and (5) references to the prior studies from which the metadata were drawn.
DOI: 10.6084/m9.figshare.7499525.v1
title: metadata.csv

description: Infant metadata. Information for each infant subject includes (1) the approximate total number of days of antibiotic treatment, assuming the duration of any given antibiotic treatment was seven days unless otherwise noted, (2) the country of origin, (3) the mode of delivery, (4) the treatment group assignment used in this study, and (5) references to the prior studies from which the metadata were drawn.
DOI: 10.7284/114412
title: Fluorometer data collected during research cruise KN217 using a WET Labs WETStar instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17637/rh.7499435
title: Stuffed YbTO

description: Crystal structure of stuffed ytterbium titanate
DOI: 10.6084/m9.figshare.7499498
title: otus.csv

description: Relative abundances of operational taxonomic units (OTUs) in infant microbiome samples. Raw 16S rRNA V4 amplicon sequencing data from infant gut microbiome samples were processed using a USEARCH pipeline and clustered into OTUs at 97 percent similarity. Samples with fewer than 5000 initial sequences were excluded, and the remaining samples were rarefied to 5000 sequences, resulting in a drop from 3311 to 2416 OTUs. The ‘t’ column refers to the month of sampling.
DOI: 10.6084/m9.figshare.7499498.v1
title: otus.csv

description: Relative abundances of operational taxonomic units (OTUs) in infant microbiome samples. Raw 16S rRNA V4 amplicon sequencing data from infant gut microbiome samples were processed using a USEARCH pipeline and clustered into OTUs at 97 percent similarity. Samples with fewer than 5000 initial sequences were excluded, and the remaining samples were rarefied to 5000 sequences, resulting in a drop from 3311 to 2416 OTUs. The ‘t’ column refers to the month of sampling.
DOI: 10.7284/114411
title: GNSS (Global Navigation Satellite System) data collected during research cruise KN217 using a C&C C-Nav 2000 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17637/rh.7499417
title: Depleted YbTO

description: Crystal structure of oxygen-depleted ytterbium titanate
DOI: 10.17637/rh.7499399
title: As grown YbTO

description: Crystal structure of as-grown ytterbium titanate
DOI: 10.17637/rh.7499399.v1
title: As grown YbTO

description: Crystal structure of as-grown ytterbium titanate
DOI: 10.7284/114406
title: Meteorological Station data collected during research cruise KN217 using a Vaisala WXT520 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17637/rh.7499396
title: Annealed YbTO

description: Crystal structure of pristine ytterbium titanate
DOI: 10.7284/114414
title: Meteorological Station data collected during research cruise KN217 using a Vaisala WXT520 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114410
title: Multibeam Echosounder data collected during research cruise KN217 using a SeaBeam 3012-P1 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114415
title: Radiometer data collected during research cruise KN217 using a Eppley PIR instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114416
title: Radiometer data collected during research cruise KN217 using a Eppley PSP instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114409
title: Singlebeam Echosounder data collected during research cruise KN217 using a Knudsen 320B/R instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114417
title: Water Temperature data collected during research cruise KN217 using a Sea-Bird SBE-48 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114413
title: TSG (Thermosalinograph) data collected during research cruise KN217 using a Sea-Bird SBE-45 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114421
title: Multiplexed data collected during research cruise KN218 using a WHOI Calliope instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114418
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise KN218 using a Hawaii UHDAS instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114419
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise KN218 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114424
title: Fluorometer data collected during research cruise KN218 using a WET Labs WETStar instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114423
title: GNSS (Global Navigation Satellite System) data collected during research cruise KN218 using a C&C C-Nav 2000 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114420
title: Meteorological Station data collected during research cruise KN218 using a Vaisala WXT520 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114426
title: Meteorological Station data collected during research cruise KN218 using a Vaisala WXT520 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7499102
title: spikesort_S13.mat

description: Fine-wire intramuscular EMG Subject 11 Protocol: Long Residual Limb Spike-Sorted Data
DOI: 10.7284/114422
title: Multibeam Echosounder data collected during research cruise KN218 using a SeaBeam 3012-P1 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7499099
title: spikesort_S14.mat

description: Fine-wire intramuscular EMG Subject 12 Protocol: Long Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499102.v1
title: spikesort_S13.mat

description: Fine-wire intramuscular EMG Subject 11 Protocol: Long Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499096
title: spikesort_S11.mat

description: Fine-wire intramuscular EMG Subject 9 Protocol: Long Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499096.v1
title: spikesort_S11.mat

description: Fine-wire intramuscular EMG Subject 9 Protocol: Long Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499099.v1
title: spikesort_S14.mat

description: Fine-wire intramuscular EMG Subject 12 Protocol: Long Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499087
title: spikesort_S10.mat

description: Fine-wire intramuscular EMG Subject 8 Protocol: Short Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499090
title: spikesort_S12.mat

description: Fine-wire intramuscular EMG Subject 10 Protocol: Short Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499093
title: spikesort_S08.mat

description: Fine-wire intramuscular EMG Subject 6 Protocol: Long Residual Limb Spike-Sorted Data
DOI: 10.7284/114427
title: Radiometer data collected during research cruise KN218 using a Eppley PIR instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7499087.v1
title: spikesort_S10.mat

description: Fine-wire intramuscular EMG Subject 8 Protocol: Short Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499090.v1
title: spikesort_S12.mat

description: Fine-wire intramuscular EMG Subject 10 Protocol: Short Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499093.v1
title: spikesort_S08.mat

description: Fine-wire intramuscular EMG Subject 6 Protocol: Long Residual Limb Spike-Sorted Data
DOI: 10.7284/114428
title: Radiometer data collected during research cruise KN218 using a Eppley PSP instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7499078
title: spikesort_S03.mat

description: Fine-wire intramuscular EMG Subject 3 Protocol: Short Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499081
title: spikesort_S07.mat

description: Fine-wire intramuscular EMG Subject 6 Protocol: Short Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499078.v1
title: spikesort_S03.mat

description: Fine-wire intramuscular EMG Subject 3 Protocol: Short Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499081.v1
title: spikesort_S07.mat

description: Fine-wire intramuscular EMG Subject 6 Protocol: Short Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499084.v1
title: spikesort_S09.mat

description: Fine-wire intramuscular EMG Subject 7 Protocol: Long Residual Limb Spike-Sorted Data
DOI: 10.7284/114429
title: Water Temperature data collected during research cruise KN218 using a Sea-Bird SBE-48 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7499069
title: spikesort_S01.mat

description: Fine-wire intramuscular EMG Subject 1 Protocol: Short Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499072
title: spikesort_S06.mat

description: Fine-wire intramuscular EMG Subject 5 Protocol: Long Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499075
title: spikesort_S02.mat

description: Fine-wire intramuscular EMG Subject 2 Protocol: Short Residual Limb Spike-Sorted Data
DOI: 10.7284/114425
title: TSG (Thermosalinograph) data collected during research cruise KN218 using a Sea-Bird SBE-45 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7499069.v1
title: spikesort_S01.mat

description: Fine-wire intramuscular EMG Subject 1 Protocol: Short Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499072.v1
title: spikesort_S06.mat

description: Fine-wire intramuscular EMG Subject 5 Protocol: Long Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499075.v1
title: spikesort_S02.mat

description: Fine-wire intramuscular EMG Subject 2 Protocol: Short Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499063
title: spikesort_S05.mat

description: Fine-wire intramuscular EMG Subject 5 Protocol: Short Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499066
title: spikesort_S04.mat

description: Fine-wire intramuscular EMG Subject 4 Protocol: Long Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499063.v1
title: spikesort_S05.mat

description: Fine-wire intramuscular EMG Subject 5 Protocol: Short Residual Limb Spike-Sorted Data
DOI: 10.6084/m9.figshare.7499066.v1
title: spikesort_S04.mat

description: Fine-wire intramuscular EMG Subject 4 Protocol: Long Residual Limb Spike-Sorted Data