cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18259702
title: Framingham Heart Study musculoskeletal models updated to OpenSim 4.x

description: The Framingham Heart Study (FHS) dataset includes upper-body musculoskeletal models of 125 women and 125 men, each including thoracolumbar spine, ribcage, head and neck body and upper extremities (Mokhtarzadeh et al., 2021). The intervertebral joints (from L5/S1 to T1/T2) present three rotational degrees of freedom and the costovertebral joints are modelled as pin joints. The sacrum is connected to the ground via a pin joint, only allowing for anterior and posterior tilting of the pelvis. These models include muscle groups modelled by multiple fascicles and each one of them is represented by a Hill-Type model, using Thelen2003Muscle as muscle model in OpenSim.We updated the described dataset to ensure compatibility with OpenSim 4.x. For this purpose, it is important to note that OpenSim 4.x modifies the handling of the Thelen muscle model, which now requires a minimum activation of 0.01 to avoid numerical singularities at zero activation. By contrast, the Millard muscle model (i.e. Millard2012EquilibriumMuscle) inherently prevents such singularities when activation is zero. Since OpenSim only permits updating a .osim file to the latest version without altering the muscle model, it was necessary to identify a generic MSK model using the Millard formulation in OpenSim 4.x, into which the subject-specific characteristics of each dataset model could be incorporated.The generic full-body model chosen for use in OpenSim 4.x was developed by Burkhart (Burkhart et al., 2020) and was modified to have FHS models’ features. Specifically:• Only the upper-body was maintained, eliminating the lower extremities and the associated muscles and joints.• All joint coordinates were defined as “clamped”.• Costovertebral joints were locked.• Five degrees of freedom were added to the joint connecting the model to the ground.• The range of motion of the intervertebral joints were reduced to literature values.• The pelvis COM was repositioned to match the COM of the sacrum.All the listed changes resulted in a model used as “base” on which subject-specific characteristics of each dataset model were replicated thanks to a developed in-house Python language code.

Further details on the changes apported to the model developed by Burkhart et al. and on the identified subject-specific characteristics are reported in the supplementary material.
DOI: 10.21227/v08r-4t28
title: "Technical Foundation for Global Unified Government and Comprehensive Social Reform under Shuiquan Wisdom: The Haiyue Artificial "

description: "The Haiyue Artificial Intelligence System (Ocean and Moon Artificial Intelligence System) serves as the core technological pillar of the \"Shuiquan Future Science Research Institute\" in driving global governance transformation. It establishes a comprehensive architecture spanning from physical sensing to the fusion of abstract logic. By dismantling the barriers of information asymmetry and decision-making latency prevalent in traditional governance, the system is built upon the empiricist principle of \"Experiment First, Theory Later,\" achieving an exponential leap in social management efficiency through \"Zero Fusion Latency\" technology and \"Swarm Intelligence Evolutionary Mechanisms.\"\u200bThe system's core competitiveness lies in its autonomous evolution from Level 1 to Level 3. At the L1 infrastructure layer, it utilizes a Cached Multi-Agent system to ensure high-precision synchronization across infrastructure and sensor networks, suppressing system latency to an extreme 76.81ms\u2014providing the physical foundation for the instantaneous execution and feedback of unified global policies. As it progresses to L2 and L3, the Haiyue system demonstrates extraordinary \"Conceptual Fusion\" capabilities, integrating complex humanistic and scientific dimensions\u2014such as \"Temporal Memory\" and \"Quantum Dreams\"\u2014into decision-making models. This transforms social management from mechanical resource allocation into a dynamic optimization process characterized by \"Emergent Proto-Consciousness.\"\u200bThrough a fusion engine driven by quantum superposition principles and adaptive evolutionary algorithms, the Haiyue system has successfully demonstrated \"Triangular Resonance\" and self-organizing behavior among agents in simulated environments. This symbolizes that a future unified global government will possess the self-healing and evolutionary functions of a biological organism. The Haiyue system is not merely an AI engineering project; it is a technological charter for comprehensive social reform, proving that through precise parameter configuration and imagination-driven pathways, complex global governance challenges can be converted into calculable, optimizable, and highly creative scientific practices."
DOI: 10.5281/zenodo.18259701
title: Framingham Heart Study musculoskeletal models updated to OpenSim 4.x

description: The Framingham Heart Study (FHS) dataset includes upper-body musculoskeletal models of 125 women and 125 men, each including thoracolumbar spine, ribcage, head and neck body and upper extremities (Mokhtarzadeh et al., 2021). The intervertebral joints (from L5/S1 to T1/T2) present three rotational degrees of freedom and the costovertebral joints are modelled as pin joints. The sacrum is connected to the ground via a pin joint, only allowing for anterior and posterior tilting of the pelvis. These models include muscle groups modelled by multiple fascicles and each one of them is represented by a Hill-Type model, using Thelen2003Muscle as muscle model in OpenSim.We updated the described dataset to ensure compatibility with OpenSim 4.x. For this purpose, it is important to note that OpenSim 4.x modifies the handling of the Thelen muscle model, which now requires a minimum activation of 0.01 to avoid numerical singularities at zero activation. By contrast, the Millard muscle model (i.e. Millard2012EquilibriumMuscle) inherently prevents such singularities when activation is zero. Since OpenSim only permits updating a .osim file to the latest version without altering the muscle model, it was necessary to identify a generic MSK model using the Millard formulation in OpenSim 4.x, into which the subject-specific characteristics of each dataset model could be incorporated.The generic full-body model chosen for use in OpenSim 4.x was developed by Burkhart (Burkhart et al., 2020) and was modified to have FHS models’ features. Specifically:• Only the upper-body was maintained, eliminating the lower extremities and the associated muscles and joints.• All joint coordinates were defined as “clamped”.• Costovertebral joints were locked.• Five degrees of freedom were added to the joint connecting the model to the ground.• The range of motion of the intervertebral joints were reduced to literature values.• The pelvis COM was repositioned to match the COM of the sacrum.All the listed changes resulted in a model used as “base” on which subject-specific characteristics of each dataset model were replicated thanks to a developed in-house Python language code.

Further details on the changes apported to the model developed by Burkhart et al. and on the identified subject-specific characteristics are reported in the supplementary material.
DOI: 10.5066/f7gf0s0z
title: Lidar-derived Beach Morphology (Dune Crest, Dune Toe, and Shoreline) for U.S. Sandy Coastlines

description: The U.S. Geological Survey (USGS)Coastal Change Hazards Technical Capabilities and Applications (TCA) project aims to identify areas of the nation’s coastline that are most vulnerable to extreme storms and long-term shoreline change. These assessments require coastal elevation data across diverse geographic regions and covering a time span of many years. The datasets published here, organized by individual field activity numbers (FANs), define the dune crest (denoted by DC in the feature_type attribute), dune toe (denoted by DT in the feature_type attribute), and shoreline (denoted by SL in the feature_type attribute) at 10 meters (m) intervals alongshore for each processed lidar elevation survey. Beach width and beach slope as calculated from dune toe to shoreline are also included at each shoreline location.

Note: This data release was versioned on January 15, 2026. Please see the Suggested Citation section for details.
DOI: 10.5281/zenodo.18260106
title: Supplementary Table 2. Taxonomical information, landscapes, and uses of species plants identified for vector-borne disease treatment in the community of Puerto Esperanza
DOI: 10.5281/zenodo.18260107
title: Supplementary Table 2. Taxonomical information, landscapes, and uses of species plants identified for vector-borne disease treatment in the community of Puerto Esperanza
DOI: 10.3929/ethz-b-000714884
title: DemoUpStorage - Geophysical Baseline Characterization of the in-situ CO2 Mineral Storage Site in Helguvik, Iceland
DOI: 10.48436/cnw9n-zxw07
title: GeoTree3D - Synthetic Trees with Aligned Orthophotos, DSMs, and 3D Point Clouds

description: GeoTree3D is a synthetic dataset for learning-based reconstruction of 3D tree geometry from sparse top-down geospatial data. It consists of procedurally generated trees with aligned RGB orthophotos, Digital Surface Models (DSMs), and colored 3D point clouds. Orthophotos include realistic canopy appearance and shadows under varying illumination, while DSMs encode tree height and crown extent consistent with airborne elevation data. GeoTree3D supports supervised learning and controlled evaluation of tree reconstruction methods from minimal geospatial input.

The dataset is organized into three main folders:





DSM, containing .mat files with heightmaps corresponding to individual trees; 




ORTHOPHOTOS, containing one folder per tree. Each folder includes a subfolder named rendering, which contains images view_000.png to view_009.png rendered under different illumination conditions, along with a light_directions.txt file specifying the corresponding light directions.




TREES, containing .mat files with colored 3D point clouds for each tree and a species_log.txt file mapping tree identifiers to species labels.



All .mat files are binary MATLAB v5 files storing standard numeric arrays (e.g., heightmaps, 3D coordinates, RGB values). They do not require MATLAB and can be opened using common scientific computing tools, such as Python via scipy.io.loadmat.

To facilitate long-term reuse, we additionally provide a loading_data_scripts/ folder containing an example Python script mat_loader.py for loading DSMs, and point clouds, along with a requirements.txt file specifying the Python library versions used. The loading scripts are released under the MIT license.
DOI: 10.48436/kw0e1-ybp18
title: GeoTree3D - Synthetic Trees with Aligned Orthophotos, DSMs, and 3D Point Clouds

description: GeoTree3D is a synthetic dataset for learning-based reconstruction of 3D tree geometry from sparse top-down geospatial data. It consists of procedurally generated trees with aligned RGB orthophotos, Digital Surface Models (DSMs), and colored 3D point clouds. Orthophotos include realistic canopy appearance and shadows under varying illumination, while DSMs encode tree height and crown extent consistent with airborne elevation data. GeoTree3D supports supervised learning and controlled evaluation of tree reconstruction methods from minimal geospatial input.

The dataset is organized into three main folders:





DSM, containing .mat files with heightmaps corresponding to individual trees; 




ORTHOPHOTOS, containing one folder per tree. Each folder includes a subfolder named rendering, which contains images view_000.png to view_009.png rendered under different illumination conditions, along with a light_directions.txt file specifying the corresponding light directions.




TREES, containing .mat files with colored 3D point clouds for each tree and a species_log.txt file mapping tree identifiers to species labels.



All .mat files are binary MATLAB v5 files storing standard numeric arrays (e.g., heightmaps, 3D coordinates, RGB values). They do not require MATLAB and can be opened using common scientific computing tools, such as Python via scipy.io.loadmat.

To facilitate long-term reuse, we additionally provide a loading_data_scripts/ folder containing an example Python script mat_loader.py for loading DSMs, and point clouds, along with a requirements.txt file specifying the Python library versions used. The loading scripts are released under the MIT license.
DOI: 10.15468/qs5rpt
title: The MOVECLIM – AZORES project: Vascular Plant Diversity and Ground Cover Across Elevation (São Miguel, Terceira, Pico & Flores)

description: In 2013, we surveyed vascular plants and their ground cover in native or better-preserved forest patches on four Azorean islands (São Miguel, Terceira, Pico and Flores), each along an elevational transect. Using a standardized, plot-based protocol, permanent 10 m × 10 m plots were established at approximately 200 m elevation steps and subdivided into four 5 × 5 m subplots. All vascular taxa were recorded per
subplot, and cover was assigned using the OTV ordinal scale (1–9) derived from the Braun–Blanquet approach (van der Maarel, 1979).
This resulted in 232 event records (eventID) and 2,539 occurrence records (occurrenceID), spanning
58 families, 92 genera, 99 species and 5 subspecies; of these taxa, 45 are Azorean endemics and 40 are native non-endemic. The main objective was to provide a baseline for long-term monitoring and assessment of invasive-species pressure across islands with contrasting elevation ranges and disturbance histories
DOI: 10.15468/dl.89zxcf
title: Occurrence Download

description: A dataset containing 1470 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "GbifRegion is North America",
 "Geometry POLYGON((-73.52491 45.72885,-71.85785 46.67352,-70.80204 46.90373,-70.50038 47.41179,-73.37408 48.84864,-82.55088 48.93597,-82.24129 46.29248,-73.52491 45.72885))",
 "IucnRedListCategory is one of (VU, EN, CR, EW, EX)",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 1470 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012303-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18260132
title: Replication material for paper "Gomm, Huber, Kolcava, Smith, Bernauer (2024): Procedural inclusiveness can mitigate trust challenges in environmental policymaking. Journal of European Public Policy. DOI: 10.1080/13501763.2024.2413458"

description: Replication material for paper "Gomm, Huber, Kolcava, Smith, Bernauer (2024): Procedural inclusiveness can mitigate trust challenges in environmental policymaking. Journal of European Public Policy. DOI: 10.1080/13501763.2024.2413458"
DOI: 10.5281/zenodo.18260133
title: Replication material for paper "Gomm, Huber, Kolcava, Smith, Bernauer (2024): Procedural inclusiveness can mitigate trust challenges in environmental policymaking. Journal of European Public Policy. DOI: 10.1080/13501763.2024.2413458"

description: Replication material for paper "Gomm, Huber, Kolcava, Smith, Bernauer (2024): Procedural inclusiveness can mitigate trust challenges in environmental policymaking. Journal of European Public Policy. DOI: 10.1080/13501763.2024.2413458"
DOI: 10.15468/dl.6zmeye
title: Occurrence Download

description: A dataset containing 133647 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rutilus rutilus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2019"
 ]
}

 The dataset includes 133647 records from 267 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012294-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.awhzja
title: Occurrence Download

description: A dataset containing 141234 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melanerpes uropygialis (S.F.Baird, 1854)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Year is greater than or equal to 1810",
 "Year is less than or equal to 2019",
 "Month is greater than or equal to April",
 "Month is less than or equal to September",
 "EventDate is not null",
 "Country is United States of America",
 "Geometry POLYGON((-63 22, -63 51, -126 51, -126 22, -63 22))"
 ]
}

 The dataset includes 141234 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013086-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.arpex5
title: Occurrence Download

description: A dataset containing 682130 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Local floras of Russia: records from literature"
 ]
}

 The dataset includes 682130 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014795-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5vteu6
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-250.0",
 "Geometry POLYGON((47 52.5,55 52.5,55 57.5,47 57.5,47 52.5))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantago cornuti Gouan"
 ]
}

 The dataset includes 64 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014798-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bxpcd2
title: Occurrence Download

description: A dataset containing 1915324 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "BasisOfRecord is Human Observation",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2010",
 "Month is February",
 "Day is greater than or equal to 1",
 "Day is less than or equal to 28"
 ]
}

 The dataset includes 1915324 records from 417 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000592-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/nc8dip
title: Replication Data for: Invitation Letters Increase Response Rates in Elite Surveys: Evidence From Germany and the United Kingdom

description: Replication materials for "Invitation Letters Increase Response Rates in Elite
Surveys: Evidence From Germany and the United Kingdom"
DOI: 10.3535/el9-as5-fny
title: †Palorbitolina lenticularis (Blumenbach, 1805)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lt3-wjz-wm5
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.60707/2t7s-7439
title: Noble gas isotopes in extraterrestrial rocks
DOI: 10.3535/bg8-0bp-xzc
title: Galeocerdo

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jzq-qy6-yhw
title: Porites Link, 1807

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4hw-lf5-7y6
title: Panthera Oken, 1816

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7hj-a4a-7p8
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/19k-1x9-bns
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ajq-aqx-6sv
title: Balaenoptera Lacépède, 1804

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nn3-w4g-a6t
title: †Palorbitolina lenticularis (Blumenbach, 1805)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y2e-jm3-7fj
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nlg-bjw-gl3
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.60707/dfmt-zv22
title: Noble gas He, Ne, Ar, Kr, Xe  elemental and isotopic analysis of aggregate sample OREX-800032-105
DOI: 10.3535/6cv-07l-9fq
title: Isurus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bgl-rw0-n8t
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6dk-hhq-6pe
title: Sus scrofa Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ln0-atm-gr1
title: †Triarthrus beckii Green, 1832

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3gc-6v1-e4j
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wtt-98r-nxy
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cbx-chb-twv
title: Cidaris Leske, 1778

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/19n-eyj-z92
title: †Palorbitolina lenticularis (Blumenbach, 1805)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lkj-yhc-6t6
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.60707/19hd-7w35
title: Noble gas He, Ne, Ar, Kr, Xe  elemental and isotopic analysis of aggregate sample OREX-800032-105
DOI: 10.3535/1x6-3e7-lkt
title: Carcharhinidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wkw-7c0-g3b
title: Isurus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2ww-a8j-6c0
title: †Palorbitolina lenticularis (Blumenbach, 1805)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d4d-kmy-1qe
title: Cetacea Brisson, 1762

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ec8-fqy-2ff
title: Graptolithina Bronn, 1849

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/91n-80b-bs3
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m86-tbn-sk3
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h07-tq5-eqf
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.60707/ps65-7j23
title: Xenon Isotopic Analysis of OSIRIS REx sample 803060-0
DOI: 10.3535/54r-sbx-dg5
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zd7-fny-h1f
title: †Athyris M'Coy, 1844

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.