cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.895148
title: CICE output from Global Ocean Forecast System (GOFS) 3.1 for 2018100112

description: INITIALIZATION: 2018100112FORECASTS:12-hrly out to 7.5 days (t180)GRIDS:ARCu0.08 -- poleward of 40NANTu0.08 -- poleward of 49.52SPARAMETERS:hi:standard_name = "sea_ice_thickness" ;hs:standard_name = "surface_snow_thickness" ;Tsfc:standard_name = "surface_temperature_where_sea_ice" ;aice:standard_name = "sea_ice_area_fraction" ;uvel:standard_name = "eastward_sea_ice_velocity" ;vvel:standard_name = "northward_sea_ice_velocity" ;sst:standard_name = "sea_water_temperature" ;uocn:standard_name = "eastward_sea_water_velocity" ;vocn:standard_name = "northward_sea_water_velocity" ;Tair:standard_name = "air_temperature" ;strength:standard_name = "compressive_strength_of_sea_ice" ;
DOI: 10.1594/pangaea.704476
title: (Table 7) Revised Paleocene age model of ODP Site 113-690 in the southern South Atlantic Ocean

description: Stratigraphic occurrence of Event/Datum from Pospichal and Wise (1990, doi:10.2973/odp.proc.sr.113.205.1990), Spiess (1990, doi:10.2973/odp.proc.sr.113.182.1990), Hamilton (1990, doi:10.2973/odp.proc.sr.113.179.1990), Quillévéré (unpublished manuscript, 2000). LO Heliolithus kleinpelli, LO Globanomalina pseudomenardii depth bottom not recorded
DOI: 10.1594/pangaea.891616
title: Supplementary data to: Non-ionic thiolated cyclodextrins - The next generation

description: Current study was aimed to develop a novel mucoadhesive thiolated cyclodextrin (CD) without ionizable groups and an intact ring backbone for drug delivery. Thiolated β-CD was prepared through bromine substitution of its hydroxyl groups followed by replacement to thiol groups using thiourea. The thiolated β-CD was characterized in vitro via dissolution studies, cytotoxicity studies, mucoadhesion studies on freshly excised porcine intestinal mucosa, and inclusion complex formation with miconazole nitrate. Thiolated β-CDs namely β-CD-SH600 and β-CD-SH1200 displayed 558.66 ± 78 and 1163.45 ± 96 µmol thiol groups per gram of polymer, respectively. Stability constant (Kc) of 190 M-1 confirmed the inclusion complex formation of miconazole nitrate with β-CD-SH. Inclusion complexes of β-CD-SH600 and β-CD-SH1200 resulted in 157 and 257-fold increased solubility of miconazole nitrate, respectively. In addition, more than 80 % of thiol groups were stable even after 6 hours at pH 5. Both β-CD-SH showed on at least 1.3-folds improved solubility in water. In contrast to cationic thiolated cyclodextrins of the first generation, both thiomers showed no significant cytotoxicity. The mucoadhesive properties of the new thiolated CDs were 39.73- and 46.37-fold improved, respectively. These results indicate that β-CD-SH might provide a new favorable tool for delivery of poorly soluble drugs providing a prolonged residence time on mucosal surfaces.
description: Supplement to: Moghadam, Ali; Ijaz, Muhammad; Asim, Mulazim Hussain; Mahmood, Arshad; Jelkmann, Max; Matuszczak, Barbara; Bernkop-Schnürch, Andreas (2018): Non-ionic thiolated cyclodextrins - the next generation. International Journal of Nanomedicine, 13, 4003-4013
DOI: 10.1594/pangaea.895149
title: CICE output from Global Ocean Forecast System (GOFS) 3.1 for 2018100212

description: INITIALIZATION: 2018100212FORECASTS:12-hrly out to 7.5 days (t180)GRIDS:ARCu0.08 -- poleward of 40NANTu0.08 -- poleward of 49.52SPARAMETERS:hi:standard_name = "sea_ice_thickness" ;hs:standard_name = "surface_snow_thickness" ;Tsfc:standard_name = "surface_temperature_where_sea_ice" ;aice:standard_name = "sea_ice_area_fraction" ;uvel:standard_name = "eastward_sea_ice_velocity" ;vvel:standard_name = "northward_sea_ice_velocity" ;sst:standard_name = "sea_water_temperature" ;uocn:standard_name = "eastward_sea_water_velocity" ;vocn:standard_name = "northward_sea_water_velocity" ;Tair:standard_name = "air_temperature" ;strength:standard_name = "compressive_strength_of_sea_ice" ;
DOI: 10.1594/pangaea.895154
title: Georeferenced photographs of benthic photoquadrats acquired along transects from Heron Reef flat and slope areas (2017-11)
DOI: 10.1594/pangaea.859143
title: Modelling calving front dynamics using a level-set method: application to Jakobshavn Isbræ, West Greenland, links model results in MATLAB format

description: Calving is a major mechanism of ice discharge of the Antarctic and Greenland ice sheets, and a change in calving front position affects the entire stress regime of marine terminating glaciers. The representation of calving front dynamics in a 2-D or 3-D ice sheet model remains non-trivial. Here, we present the theoretical and technical framework for a level-set method, an implicit boundary tracking scheme, which we implement into the Ice Sheet System Model (ISSM). This scheme allows us to study the dynamic response of a drainage basin to user-defined calving rates. We apply the method to Jakobshavn Isbræ, a major marine terminating outlet glacier of the West Greenland Ice Sheet. The model robustly reproduces the high sensitivity of the glacier to calving, and we find that enhanced calving triggers significant acceleration of the ice stream. Upstream acceleration is sustained through a combination of mechanisms. However, both lateral stress and ice influx stabilize the ice stream. This study provides new insights into the ongoing changes occurring at Jakobshavn Isbræ and emphasizes that the incorporation of moving boundaries and dynamic lateral effects, not captured in flow-line models, is key for realistic model projections of sea level rise on centennial timescales.
description: Model results have been created with the Ice Sheet System Model (Larour et al., 2012, doi:10.1029/2011JF002140), trunk-jpl svn revision 18976. The model uses the SI units: [time]=s; [distance]=m; [volume]=m^3; [vel]=m/a; [strainrates]=1/s; Modelcoordinates are in polar stereographic projection, 45W 70N.
description: Supplement to: Bondzio, Johannes H; Seroussi, Hélène; Morlighem, Mathieu; Kleiner, Thomas; Rückamp, Martin; Humbert, Angelika; Larour, Eric Y (2016): Modelling calving front dynamics using a level-set method: application to Jakobshavn Isbræ, West Greenland. The Cryosphere, 10(2), 497-510
DOI: 10.1594/pangaea.860950
title: Delta 18O record versus age for 150 ka in ice core Vostok

description: During much of the Quaternary, the Earth's climate has undergone drastic changes most notably successive glacial and interglacial episodes. The past 150 kyr includes such a climatic cycle: the last interglacial, the last glacial and the present holocene interglacial. A new climatic-time series for this period has been obtained using d18O data from an Antarctic ice core.
description: Supplement to: Lorius, C; Jouzel, Jean; Ritz, Catherine; Merlivat, Liliane; Barkov, Nartsiss I; Korotkevitch, Y S; Kotlyakov, Vladimir (1985): A 150,000-year climatic record from Antarctic ice. Nature, 316, 591-596
DOI: 10.1594/pangaea.880531
title: Physical oceanography measured in the Gotland basin in 2015

description: Relates to figure 2 of the article.
DOI: 10.1594/pangaea.893876
title: Alignment of genetic variants of the MHC class II loci of East African cichlids

description: First, the generated raw reads (11,569 reads) were processed with Roche's demultiplexing and converting tools (sffinfo, sfffile) and sequences of primer annealing sites were removed. For quality filtering we applied a filter for too short reads (≤ 150 bp), we only allowed 1% of ambiguous bases (N) and filtered out low quality sequences (Mean ≥ 15). These sequences were imported into Geneious (6.1.6 Biomatters Ltd, www.geneious.com) and de novo assembled (with custom sensitivity: minimum overlap identity of 95 % and maximum ambiguity 4 using all reads from one species. This resulted in contigs of single individuals with highly identical reads (pairwise identity: median 99.50 %) and contigs of several individuals sharing these reads (pairwise identity: median 99.40 %). The coverage ranged from 2 to 131 for single individual contigs and 2 to 337 reads for contigs originating from multiple individuals. We also kept low coverage contigs as we use our data for measuring genetic diversity among tribes and not for investigating functionality or selection processes (indicated with suffix “low” in the alignment). However, if more than 3 bp of a read were different than the rest of the contig, the read was excluded and also singletons, which differed dramatically (≥ 10 mutations) to other contigs, were removed from the data set (reads N=517). Consensus sequences were generated within Geneious using 50 % strict rule from each contig and for each individual. Most homopolymer regions were correctly called with these settings and ambiguous positions were coded according to IUPAC rules. The obtained variants were aligned using MAFFT (--auto; 200PAM/k=2, 1.53 open penalty/0.123 offset) (Katoh & Standley, 2013) and insertions of ambiguous positions, homopolymers and misalignments were manually checked. This resulted in an alignment of 751 base pairs containing both intronic and exonic regions. A blast search of the alleles led to the exclusion of further sequences (removed contigs N=266). In a next step we shortened the alleles to exon 2 only, in order to (i) reduce our data set to coding nucleotides and (ii) to reduce the amount of missing data and ambiguities. This resulted in a total number of 844 MHC exon 2 variants of 160 bp lengths. Despite our methodological limitations, short reads and relatively low sequence coverage for some contigs, our results are valid as a valuable measurement of immunogenetic diversity that is comparable across all tribes of Lake Tanganyika cichlids as these biases are expected to be similarly distributed across the different tribes.The available alignment was generated as described above and saved as a fasta file. It includes 844 MHC exon 2 variants (160 base pairs). The header of each entry includes information about the scientific species name (e.g. Tropheus moorii) with a specific variant name (e.g. 04_01). This can be followed by the indication "low", which was added if the variant was called with very low coverage (&lt;=2x).
DOI: 10.1594/pangaea.895157
title: Georeferenced photographs of benthic photoquadrats acquired along transects from Heron Reef flat and slope areas (2011-11)
DOI: 10.1594/pangaea.895160
title: Georeferenced photographs of benthic photoquadrats acquired along transects from Heron Reef flat and slope areas (2013-11)
DOI: 10.1594/pangaea.895151
title: CICE output from Navy Earth System Model (NESM) for 2018093012

description: INITIALIZATION: 2018093012FORECASTS:daily at 00Z out to 45 days (t1068)GRIDS:ARCu0.08 -- poleward of 40NANTu0.08 -- poleward of 49.52SPARAMETERS:hi:standard_name = "sea_ice_thickness" ;hs:standard_name = "surface_snow_thickness" ;Tsfc:standard_name = "surface_temperature_where_sea_ice" ;aice:standard_name = "sea_ice_area_fraction" ;uvel:standard_name = "eastward_sea_ice_velocity" ;vvel:standard_name = "northward_sea_ice_velocity" ;sst:standard_name = "sea_water_temperature" ;uocn:standard_name = "eastward_sea_water_velocity" ;vocn:standard_name = "northward_sea_water_velocity" ;Tair:standard_name = "air_temperature" ;strength:standard_name = "compressive_strength_of_sea_ice" ;
DOI: 10.1594/pangaea.894800
title: Georeferenced photographs of benthic photoquadrats acquired along transects from Heron Reef flat and slope areas (2016-09)

description: Multibeam data were collected during R/V Heincke cruise HE456. Data recording was executed in North Sea during systematic profiling. Data are unprocessed and may contain outliers and blunders. Therefore the data should not directly be used for grid calculations and charting projects but need to be edited furthermore. One file contains a measurement period not exceeding ten minutes. The dataset consists of 1514 files in Simrad Multibeam Processing Format (*.all) which are compressed with GZIP to size of 35.8 GB (53.9. GB without compression). Simrad data files can be processed using the software packages CARIS HIPS/SIPS or with the open source software package MB-System (http://www.ldeo.columbia.edu/res/pi/MB-System/).
DOI: 10.1594/pangaea.895152
title: CICE output from Navy Earth System Model (NESM) for 2018100112

description: INITIALIZATION: 2018100112FORECASTS:daily at 00Z out to 45 days (t1068)GRIDS:ARCu0.08 -- poleward of 40NANTu0.08 -- poleward of 49.52SPARAMETERS:hi:standard_name = "sea_ice_thickness" ;hs:standard_name = "surface_snow_thickness" ;Tsfc:standard_name = "surface_temperature_where_sea_ice" ;aice:standard_name = "sea_ice_area_fraction" ;uvel:standard_name = "eastward_sea_ice_velocity" ;vvel:standard_name = "northward_sea_ice_velocity" ;sst:standard_name = "sea_water_temperature" ;uocn:standard_name = "eastward_sea_water_velocity" ;vocn:standard_name = "northward_sea_water_velocity" ;Tair:standard_name = "air_temperature" ;strength:standard_name = "compressive_strength_of_sea_ice" ;
DOI: 10.1594/pangaea.882249
title: Basal age, surface accumulation, basal melting, geothermal flux and Lliboutry exponent of the velocity profile in the Dome C area

description: Ice sheets provide exceptional archives of past changes in polar climate, regional environment and global atmospheric composition. The oldest dated deep ice core drilled in Antarctica has been retrieved at EPICA Dome C (EDC), reaching ~800,000 years. Obtaining an older paleoclimatic record from Antarctica is one of the greatest challenges of the ice core community. Here, we use internal isochrones, identified from airborne radar coupled to ice-flow modelling to estimate the age of basal ice along transects in the Dome C area. Three glaciological properties are inverted from isochrones: surface accumulation rate; geothermal flux; and the exponent of the Lliboutry velocity profile. We find that old ice (&gt;1 Myr, 1 million years) likely exists in two regions: one ~40 km south-west of Dome C along the ice divide to Vostok, close to a secondary dome that we name "Little Dome C" (LDC); and a second region named "North Patch" (NP) located 10-30 km north-east of Dome C, in a region where the geothermal flux is apparently relatively low. Our work demonstrates the value of combining radar observations with ice flow modelling to accurately represent the true nature of ice flow, and the formation of ice-sheet architecture, in the centre of large ice sheets.
description: Supplement to: Parrenin, Frédéric; Cavitte, Marie G P; Blankenship, Donald D; Chappellaz, Jérôme A; Fischer, Hubertus; Gagliardini, Olivier; Masson-Delmotte, Valerie; Passalacqua, Olivier; Ritz, Catherine; Roberts, Jason L; Siegert, Martin J; Young, Duncan A (2017): Is there 1.5-million-year-old ice near Dome C, Antarctica? The Cryosphere, 11(6), 2427-2437
DOI: 10.1594/pangaea.890123
title: Foraminiferal Mg/Ca and reconstructed temperatures for sediment core LOM-1

description: G. trilobus = Globigerinoides trilobus.G. bulloides = Globigerina bulloides.Cibicidoides = Cibicidoides spp.Melonis p. = Melonis pompilioides.
DOI: 10.1594/pangaea.875219
title: Age model of Lake Muzelle sediments
DOI: 10.1594/pangaea.895153
title: CICE output from Navy Earth System Model (NESM) for 2018100212

description: INITIALIZATION: 2018100212FORECASTS:daily at 00Z out to 45 days (t1068)GRIDS:ARCu0.08 -- poleward of 40NANTu0.08 -- poleward of 49.52SPARAMETERS:hi:standard_name = "sea_ice_thickness" ;hs:standard_name = "surface_snow_thickness" ;Tsfc:standard_name = "surface_temperature_where_sea_ice" ;aice:standard_name = "sea_ice_area_fraction" ;uvel:standard_name = "eastward_sea_ice_velocity" ;vvel:standard_name = "northward_sea_ice_velocity" ;sst:standard_name = "sea_water_temperature" ;uocn:standard_name = "eastward_sea_water_velocity" ;vocn:standard_name = "northward_sea_water_velocity" ;Tair:standard_name = "air_temperature" ;strength:standard_name = "compressive_strength_of_sea_ice" ;
DOI: 10.1594/pangaea.895090
title: Ultra-violet measurements from station Izaña (2018-09)
DOI: 10.1594/pangaea.895091
title: Radiosonde measurements from station Izaña (2018-09)

description: Start location: Guimar; Distance from radiation site: 5 km
DOI: 10.1594/pangaea.895092
title: Ozone measurements from station Izaña (2018-09)
DOI: 10.1594/pangaea.895183
title: Ultra-violet measurements from station Payerne (2013-07)

description: UV reflect values might contain errors.
DOI: 10.1594/pangaea.895184
title: Meteorological synoptical observations from station Payerne (2013-07)
DOI: 10.1594/pangaea.704819
title: (Table 5) Relative abundances of planktonic foraminifera in Maastrichtian to upper Thanetian sediments of DSDP Hole 43-384
DOI: 10.1594/pangaea.888406
title: Discharge of a small Low Arctic watershed on Herschel Island (2015)
DOI: 10.1594/pangaea.888175
title: Discharge of a small Low Arctic watershed on Herschel Island (2014)
DOI: 10.1594/pangaea.890849
title: Daily rainfall and wet dissolved carbon concentration from July to September in Yangjuangou Catchment, Loess Plateau
DOI: 10.1594/pangaea.890850
title: Monthly rainfall and wet dissolved carbon concentration from July to September in Yangjuangou Catchment, Loess Plateau
DOI: 10.1594/pangaea.744382
title: Physical oceanography during Thalassa cruise Thalassa79/1 to the North Sea
DOI: 10.1594/pangaea.880533
title: Concentration profiles of ammonium, nitrate and phosphate measured in the Gotland basin in 2015

description: Relates to figure 3 and 4 of the article.
DOI: 10.1594/pangaea.890124
title: Cibicidoides spp. stable isotopic results of sediment core LOM-1
DOI: 10.1594/pangaea.821678
title: Physical oceanography from CTDs during Otto Smidt cruise E90TC
DOI: 10.1594/pangaea.855279
title: (Table 1) Age determination of sediment cores F2-92-P3 and F2-92-P40

description: Although climate records from several locations around the world show nearly synchronous and abrupt changes, the nature of the inferred teleconnection is still poorly understood. On the basis of preserved laminations and molybdenum enrichments in open margin sediments we demonstrate that the oxygen content of northeast Pacific waters at 800 m depth during the Bölling-Alleröd warm period (15–13 kyr) was greatly reduced. Existing oxygen isotopic records of benthic and planktonic foraminifera suggest that this was probably due to suppressed ventilation at higher latitudes of the North Pacific. Comparison with ventilation records for the North Atlantic indicates an antiphased pattern of convection relative to the North Pacific over the past 22 kyr, perhaps due to variations in water vapor transport across Central America.
description: Supplement to: Zheng, Yan; van Geen, Alexander; Anderson, Robert F; Gardner, James V; Dean, Walter E (2000): Intensification of the Northeast Pacific oxygen minimum zone during the Bölling-Alleröd Warm Period. Paleoceanography, 15(5), 528-536
DOI: 10.1594/pangaea.858211
title: Time series of atmospheric water vapour at station ABMF_S1
DOI: 10.1594/pangaea.854835
title: Miocene stable isotope record of benthic foraminifera from IODP Site 320-U1336

description: Stable carbon and oxygen isotopes (d13C and d18O) of foraminiferal tests are amongst the most important tools in paleoceanography but the extent to which recrystallization can alter the isotopic composition of the tests is not well known. Here, we compare three middle Miocene (16–13 Ma) benthic foraminiferal stable isotope records from eastern equatorial Pacific sites with different diagenetic histories to investigate the effect of recrystallization. To test an extreme case, we analyzed stable isotope compositions of benthic foraminifera from Integrated Ocean Drilling Program Site U1336, for which the geochemistry of bulk carbonates and associated pore waters indicate continued diagenetic alteration in sediments &gt; 14.7 Ma. Despite this diagenetic overprinting, the amplitudes and absolute values of the analyzed U1336 stable isotopes agree well with high resolution records from better preserved Sites U1337 and U1338 nearby. Our results suggest that although benthic foraminiferal tests of all three sites show some degree of textural changes due to recrystallization, they have retained their original stable isotope signatures. The good agreement of the benthic foraminiferal stable isotope records demonstrates that recrystallization occurred extremely rapidly (&lt;100 kyr) after deposition. This is confirmed by the preservation of orbital cyclicities in U1336 stable isotope data and d18O values being different to inorganic calcite that would precipitate from U1336 pore waters during late recrystallization. The close similarity of the benthic foraminiferal stable isotope records between the sites allows the well resolved paleo-magnetic results of Site U1336 to be transferred to Sites U1337 and U1338 improving the global Geological Timescale.
description: Supplement to: Voigt, Janett; Hathorne, Ed C; Frank, Martin; Holbourn, Ann E (2016): Minimal influence of recrystallization on middle Miocene benthic foraminiferal stable isotope stratigraphy in the eastern equatorial Pacific. Paleoceanography, 31(1), 98-114
DOI: 10.1594/pangaea.858233
title: Time series of atmospheric water vapour at station AREQ_S1
DOI: 10.1594/pangaea.884077
title: Effects of parental care on resource allocation into immune defence and buccal microbiota in mouthbrooding cichlids: buccal microbiota composition (MySeq, Illumina)

description: OTU #: Number of Operational Taxonomic Unit
DOI: 10.1594/pangaea.895187
title: Other measurements at 10 m from station Payerne (2013-07)
DOI: 10.1594/pangaea.895215
title: CICE output from Global Ocean Forecast System (GOFS) 3.1 for 2018100312

description: INITIALIZATION: 2018100312FORECASTS:12-hrly out to 7.5 days (t180)GRIDS:ARCu0.08 -- poleward of 40NANTu0.08 -- poleward of 49.52SPARAMETERS:hi:standard_name = "sea_ice_thickness" ;hs:standard_name = "surface_snow_thickness" ;Tsfc:standard_name = "surface_temperature_where_sea_ice" ;aice:standard_name = "sea_ice_area_fraction" ;uvel:standard_name = "eastward_sea_ice_velocity" ;vvel:standard_name = "northward_sea_ice_velocity" ;sst:standard_name = "sea_water_temperature" ;uocn:standard_name = "eastward_sea_water_velocity" ;vocn:standard_name = "northward_sea_water_velocity" ;Tair:standard_name = "air_temperature" ;strength:standard_name = "compressive_strength_of_sea_ice" ;
DOI: 10.1594/pangaea.895188
title: Other measurements at 30 m from station Payerne (2013-07)
DOI: 10.1594/pangaea.861353
title: In-situ seawater pH and temperature at a low-pH shallow CO2 vent system during the reciprocal transplant experiment (June-July 2015)