cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11937594.v1
title: Additional file 19 of Evolution of PHAS loci in the young spike of Allohexaploid wheat

description: Additional file 19: Supplementary Table 11. The target cleavage information in AM (cold stress: SRR3690680) from the degradome datasets.
DOI: 10.6084/m9.figshare.6694721
title: Additional file 3: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

description: Table S3. Sequence information of all expressed lncRNAs found in the present study. (FA 69436Â kb)
DOI: 10.26300/0bw3-yy90
title: Quonset Pt
DOI: 10.6084/m9.figshare.6694721.v1
title: Additional file 3: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

description: Table S3. Sequence information of all expressed lncRNAs found in the present study. (FA 69436Â kb)
DOI: 10.6084/m9.figshare.7743305
title: Stability, Mechanical Properties and Anisotropic Elastic Properties of GaxMgy Compounds

description: The stability, mechanical properties and anisotropic properties of sound velocities of Ga2Mg5, GaMg2, GaMg, O-Ga2Mg, H-Ga2Mg and Ga5Mg2 are investigated systematically by the first-principles calculation. The cohesive energy and formation enthalpy are obtained and used to estimate the stability of the Ga-Mg binary compounds. GaMg compound is the most stable and has the lowest formation enthalpy as -0.162eV/atom of those GaxMgy compounds. The elastic constants of single crystal, hardness, bulk, shear, Young's modulus and Poisson's ratio of the polycrystalline crystal are obtained and used to estimate the mechanical properties. Ga5Mg2 and H-Ga2Mg have the lager bulk, shear and Young’s modulus and corresponding B/G is low. H-Ga2Mg is harder than the other compounds from the results of Poisson’s ratio. The anisotropic mechanical properties are discussed using the anisotropic index, two-dimensional planar projections on different planes of the bulk and Young's modulus. The Young's modulus of H-Ga2Mg shows the strongly anisotropy of mechanical properties and GaMg2 has the weakest anisotropy among all the compounds.
DOI: 10.6084/m9.figshare.7743305.v1
title: Stability, Mechanical Properties and Anisotropic Elastic Properties of GaxMgy Compounds

description: The stability, mechanical properties and anisotropic properties of sound velocities of Ga2Mg5, GaMg2, GaMg, O-Ga2Mg, H-Ga2Mg and Ga5Mg2 are investigated systematically by the first-principles calculation. The cohesive energy and formation enthalpy are obtained and used to estimate the stability of the Ga-Mg binary compounds. GaMg compound is the most stable and has the lowest formation enthalpy as -0.162eV/atom of those GaxMgy compounds. The elastic constants of single crystal, hardness, bulk, shear, Young's modulus and Poisson's ratio of the polycrystalline crystal are obtained and used to estimate the mechanical properties. Ga5Mg2 and H-Ga2Mg have the lager bulk, shear and Young’s modulus and corresponding B/G is low. H-Ga2Mg is harder than the other compounds from the results of Poisson’s ratio. The anisotropic mechanical properties are discussed using the anisotropic index, two-dimensional planar projections on different planes of the bulk and Young's modulus. The Young's modulus of H-Ga2Mg shows the strongly anisotropy of mechanical properties and GaMg2 has the weakest anisotropy among all the compounds.
DOI: 10.6084/m9.figshare.19801908.v1
title: Additional file 3 of Overexpression of AHL9 accelerates leaf senescence in Arabidopsis thaliana

description: Additional file 3 Table S2 Differentially expressed genes of WT, AHL9-OE10, and AHL9-OE11.
DOI: 10.6084/m9.figshare.19801908
title: Additional file 3 of Overexpression of AHL9 accelerates leaf senescence in Arabidopsis thaliana

description: Additional file 3 Table S2 Differentially expressed genes of WT, AHL9-OE10, and AHL9-OE11.
DOI: 10.6084/m9.figshare.19801884.v1
title: Additional file 5 of Transmembrane transport process and endoplasmic reticulum function facilitate the role of gene cel1b in cellulase production of Trichoderma reesei

description: Additional file 5: Table S4. DEGs related to protein translocation across ER.
DOI: 10.26300/adm3-mq81
title: RI Buoy Data
DOI: 10.6084/m9.figshare.14559062
title: Additional file 4 of Tributyltin perturbs femoral cortical architecture and polar moment of inertia in rat

description: Additional file 4.
DOI: 10.6084/m9.figshare.14559062.v1
title: Additional file 4 of Tributyltin perturbs femoral cortical architecture and polar moment of inertia in rat

description: Additional file 4.
DOI: 10.26300/1f5t-2x75
title: Saltwater RIDOH Bacterial Count Lab Data Entry and Beach Closure Data, 2006- 2019
DOI: 10.5281/zenodo.10684330
title: BAM files for Alkallas and Najafabadi, Methods Mol Biol 2022, 2515:129-150 (part 3)
DOI: 10.5281/zenodo.10684331
title: BAM files for Alkallas and Najafabadi, Methods Mol Biol 2022, 2515:129-150 (part 3)
DOI: 10.6084/m9.figshare.6694769
title: Additional file 3: of Comparative genome-wide characterization leading to simple sequence repeat marker development for Nicotiana

description: Table S2 Duplication between NIX and reported markers. (XLS 41 kb)
DOI: 10.6084/m9.figshare.6694769.v1
title: Additional file 3: of Comparative genome-wide characterization leading to simple sequence repeat marker development for Nicotiana

description: Table S2 Duplication between NIX and reported markers. (XLS 41 kb)
DOI: 10.6084/m9.figshare.14559068
title: Additional file 6 of Tributyltin perturbs femoral cortical architecture and polar moment of inertia in rat

description: Additional file 6.
DOI: 10.6084/m9.figshare.6694784
title: Additional file 5: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

description: Table S5. Summary of differentially expressed lncRNAs between mature livers and immature livers in chickens. (XLSX 32Â kb)
DOI: 10.6084/m9.figshare.14559068.v1
title: Additional file 6 of Tributyltin perturbs femoral cortical architecture and polar moment of inertia in rat

description: Additional file 6.
DOI: 10.6084/m9.figshare.6694784.v1
title: Additional file 5: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

description: Table S5. Summary of differentially expressed lncRNAs between mature livers and immature livers in chickens. (XLSX 32Â kb)
DOI: 10.6084/m9.figshare.6694820
title: Additional file 6: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

description: Table S6. GO enrichment analysis (Pâ &lt;â 0.05) of the differentially expressed mRNAs. S gene number: the number of significant differentially expressed mRNAs which match to a GO term; TS gene number: the number of significant differentially expressed mRNAs which have GO annotations; B gene number: the number of detected mRNAs which match to a GO term; TB gene number: the number of all detected mRNAs which have GO annotations. (XLSX 39Â kb)
DOI: 10.6084/m9.figshare.6694820.v1
title: Additional file 6: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

description: Table S6. GO enrichment analysis (Pâ &lt;â 0.05) of the differentially expressed mRNAs. S gene number: the number of significant differentially expressed mRNAs which match to a GO term; TS gene number: the number of significant differentially expressed mRNAs which have GO annotations; B gene number: the number of detected mRNAs which match to a GO term; TB gene number: the number of all detected mRNAs which have GO annotations. (XLSX 39Â kb)
DOI: 10.6084/m9.figshare.14034853
title: Characterization of an NDM-5-producing hypervirulent <i>Klebsiella pneumoniae</i> sequence type 65 clone from a lung transplant recipient

description: The emergence of New Delhi Metallo-β-lactamase (NDM)-producing <i>Klebsiella pneumoniae</i> has aroused critical concern worldwide. Herein, we reported the first emergence of NDM-5-producing <i>K. pneumoniae</i> isolates in a 68-year-old lung transplant recipient, who died of septic shock 13 days after surgery. The <i>K. pneumoniae</i> strain KP22937 isolated from the bloodstream of the patient was analyzed for phenotypes and genotypes. KP22937 belonged to sequence type (ST) 65 and capsule serotype K2, contained <i>iucABCDiutA</i> and <i>iroBCDN</i> virulence clusters, showed high virulence to mice, and was therefore considered a hypervirulent <i>K. pneumoniae</i>. The <i>bla</i><sub>NDM-5</sub> gene was located on a genomic island region of the IncX3-type plasmid pNDM22937, which was successfully transferred to <i>Escherichia coli</i> EC600 with insignificant fitness costs. The transconjugant demonstrated similar antimicrobial susceptibility and growth kinetics to the recipient <i>E. coli</i> EC600. The plasmid pNDM22937 was almost identical to the <i>bla</i><sub>NDM-5</sub>-carrying IncX3 plasmids previously reported in <i>K. pneumoniae</i> strains with different ST types and in other species. Our findings raise concerns about the horizontal spread of <i>bla</i><sub>NDM-5</sub> gene mediated by IncX3 plasmid, where hypervirulent <i>K. pneumoniae</i> strains are also involved. Stricter control measures are needed to prevent the dissemination of the novel clone in hospital settings.
DOI: 10.6084/m9.figshare.14034853.v2
title: Characterization of an NDM-5-producing hypervirulent <i>Klebsiella pneumoniae</i> sequence type 65 clone from a lung transplant recipient

description: The emergence of New Delhi Metallo-β-lactamase (NDM)-producing <i>Klebsiella pneumoniae</i> has aroused critical concern worldwide. Herein, we reported the first emergence of NDM-5-producing <i>K. pneumoniae</i> isolates in a 68-year-old lung transplant recipient, who died of septic shock 13 days after surgery. The <i>K. pneumoniae</i> strain KP22937 isolated from the bloodstream of the patient was analyzed for phenotypes and genotypes. KP22937 belonged to sequence type (ST) 65 and capsule serotype K2, contained <i>iucABCDiutA</i> and <i>iroBCDN</i> virulence clusters, showed high virulence to mice, and was therefore considered a hypervirulent <i>K. pneumoniae</i>. The <i>bla</i><sub>NDM-5</sub> gene was located on a genomic island region of the IncX3-type plasmid pNDM22937, which was successfully transferred to <i>Escherichia coli</i> EC600 with insignificant fitness costs. The transconjugant demonstrated similar antimicrobial susceptibility and growth kinetics to the recipient <i>E. coli</i> EC600. The plasmid pNDM22937 was almost identical to the <i>bla</i><sub>NDM-5</sub>-carrying IncX3 plasmids previously reported in <i>K. pneumoniae</i> strains with different ST types and in other species. Our findings raise concerns about the horizontal spread of <i>bla</i><sub>NDM-5</sub> gene mediated by IncX3 plasmid, where hypervirulent <i>K. pneumoniae</i> strains are also involved. Stricter control measures are needed to prevent the dissemination of the novel clone in hospital settings.
DOI: 10.6084/m9.figshare.6694832
title: Additional file 7: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

description: Table S7. The differentially expressed target protein-coding genes of the differentially expressed lncRNA in the present study. (XLSX 3850Â kb)
DOI: 10.6084/m9.figshare.6694832.v1
title: Additional file 7: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

description: Table S7. The differentially expressed target protein-coding genes of the differentially expressed lncRNA in the present study. (XLSX 3850Â kb)
DOI: 10.6084/m9.figshare.11937717
title: Additional file 8 of Linker histone variant H1t is closely associated with repressed repeat-element chromatin domains in pachytene spermatocytes

description: Additional file 8. H1t-associated proteins obtained after mass spectrometry.
DOI: 10.6084/m9.figshare.11937717.v1
title: Additional file 8 of Linker histone variant H1t is closely associated with repressed repeat-element chromatin domains in pachytene spermatocytes

description: Additional file 8. H1t-associated proteins obtained after mass spectrometry.
DOI: 10.5281/zenodo.8247270
title: Model_Input_Files_and_Simulation_Output

description: This provides the BioRT-HBV model input and output for the paper submission "As above, so below: the growing importance of water and carbon processes beneath soils in a warmer and drier climate".Coal_Creek_Original: Input and Output files associated with the model calibrated to average DOC years; used for making Figures 3, 4, 5, 6, 7, and 8.Coal_Creek_High: Input and Output files associated with the model calibrated to high DOC years; used for making Figure 4.

Rxn_Implementation_Results: Output files associated with the model simulations that have Resp-SZ only, and Resp-SZ & Resp-DZ; used for making Figure 5.Input files and output for the various numerical experiments, used in figure 9: Coal_Creek_DryandWet, Coal_Creek_DryYears, Num_Exp_HBVResults_and_precipchem_files, Num_Exp_outputHBV-BioRT-new_ver(1).zip : files for the BioRT-HBV model
DOI: 10.5281/zenodo.8247271
title: Model_Input_Files_and_Simulation_Output

description: This provides the BioRT-HBV model input and output for the paper submission "As above, so below: the growing importance of water and carbon processes beneath soils in a warmer and drier climate".Coal_Creek_Original: Input and Output files associated with the model calibrated to average DOC years; used for making Figures 3, 4, 5, 6, 7, and 8.Coal_Creek_High: Input and Output files associated with the model calibrated to high DOC years; used for making Figure 4.

Rxn_Implementation_Results: Output files associated with the model simulations that have Resp-SZ only, and Resp-SZ & Resp-DZ; used for making Figure 5.Input files and output for the various numerical experiments, used in figure 9: Coal_Creek_DryandWet, Coal_Creek_DryYears, Num_Exp_HBVResults_and_precipchem_files, Num_Exp_outputHBV-BioRT-new_ver(1).zip : files for the BioRT-HBV model
DOI: 10.6084/m9.figshare.6694865
title: Additional file 9: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

description: Table S9. LncRNAs and its potential target genes that are involved in some key pathways related to the postnatal liver development. (XLSX 897Â kb)
DOI: 10.6084/m9.figshare.6694865.v1
title: Additional file 9: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

description: Table S9. LncRNAs and its potential target genes that are involved in some key pathways related to the postnatal liver development. (XLSX 897Â kb)
DOI: 10.6084/m9.figshare.14559214
title: Additional file 2 of Metabolome and transcriptome profiling reveals anthocyanin contents and anthocyanin-related genes of chimeric leaves in Ananas comosus var. bracteatus

description: Additional file 2: File S2: Annotated KEGG maps of genes. Blue bars indicate no significant changes between GR and RE samples. Red/green bars indicate up/down regulation of genes in RE samples compared with GR samples. White bars indicated undetectable genes.
DOI: 10.6084/m9.figshare.14559220
title: Additional file 4 of Metabolome and transcriptome profiling reveals anthocyanin contents and anthocyanin-related genes of chimeric leaves in Ananas comosus var. bracteatus

description: Additional file 4: Table S2: Numbers of Annotated metabolites and DPMs distributing in KEGG classification.
DOI: 10.6084/m9.figshare.12986404
title: Additional file 6 of Mining and evolution analysis of lateral organ boundaries domain (LBD) genes in Chinese white pear (Pyrus bretschneideri)

description: Additional file 6: Table S3. The synteny analysis of PbrLBD gene family.
DOI: 10.6084/m9.figshare.12986404.v1
title: Additional file 6 of Mining and evolution analysis of lateral organ boundaries domain (LBD) genes in Chinese white pear (Pyrus bretschneideri)

description: Additional file 6: Table S3. The synteny analysis of PbrLBD gene family.
DOI: 10.6084/m9.figshare.14559214.v1
title: Additional file 2 of Metabolome and transcriptome profiling reveals anthocyanin contents and anthocyanin-related genes of chimeric leaves in Ananas comosus var. bracteatus

description: Additional file 2: File S2: Annotated KEGG maps of genes. Blue bars indicate no significant changes between GR and RE samples. Red/green bars indicate up/down regulation of genes in RE samples compared with GR samples. White bars indicated undetectable genes.
DOI: 10.6084/m9.figshare.14559232.v1
title: Additional file 8 of Metabolome and transcriptome profiling reveals anthocyanin contents and anthocyanin-related genes of chimeric leaves in Ananas comosus var. bracteatus

description: Additional file 8: Table S6: Correlation analysis results of Metabolites and genes in the third and seventh quadrants of nine-quandrant flat.
DOI: 10.6084/m9.figshare.14559211
title: Additional file 1 of Metabolome and transcriptome profiling reveals anthocyanin contents and anthocyanin-related genes of chimeric leaves in Ananas comosus var. bracteatus

description: Additional file 1: File S1: Annotated KEGG maps of metabolites. Blue plots indicate no significant changes between GR and RE samples. Red/green plots indicate up/down production of metabolites in RE samples compared with GR samples. White plots indicated undetectable metabolites.
DOI: 10.25549/whit-c170-105005
title: Imperial Valley - Brawley, Indio, Calexico, Mexicali, El Centro, Boulder Park, Jacumba, Calif. and Mexico, 1939

description: 34 photographs of small towns and Boulder Park in the Imperial Valley and surrounding areas, California and Mexico, 1939 March. One banner across a road reads: "end of U.S. 93 International four states highway," and the international border at Mexico (presumably between Calexico and Mexicali) is shown. Boulder Park is in Jacumba.
DOI: 10.15468/dl.1bbetk
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myrmecophaga tridactyla Linnaeus, 1758",
 "Country is Colombia",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 44 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085954-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-105395
title: Imperial Valley, California, Counties of Imperial and Riverside, Calif.,1939

description: 14 photographs of fruit trees and ground crops, rocks, desert, highways, an industrial facility, the City of Imperial, Counties of Imperial and Riverside, California, 1939 March. Included in the signs visible in Imperial are Florsheim Shoes, Ellis' La Tienda del Pueblo, and Botica Popular.
DOI: 10.15468/dl.nhsnwb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "GenusKey" : [
 "is Guibourtia"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006244-240506114902167/datasets/export for details.
DOI: 10.15468/dl.9gl1yy
title: Occurrence Download

description: A dataset containing 1191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "InstitutionCode is z"
 ]
}

 The dataset includes 1191 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085957-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-105004
title: Imperial Valley - Brawley, Indio, Calexico, Mexicali, El Centro, Boulder Park, Jacumba, Calif. and Mexico, 1939

description: 34 photographs of small towns and Boulder Park in the Imperial Valley and surrounding areas, California and Mexico, 1939 March. One banner across a road reads: "end of U.S. 93 International four states highway," and the international border at Mexico (presumably between Calexico and Mexicali) is shown. Boulder Park is in Jacumba.
DOI: 10.25549/whit-c170-60010
title: Intersection of Mines Avenue and South Lorena Street, Los Angeles, CA, 1934

description: 3 photographs of Mines Avenue and 1 photograph of intersection of Mines Avenue and South Lorena Street, Los Angeles, CA, 1934. "Subject: Intersection of 9th [sic] and Mines, Wil[son] Oil Co[mpany] File #38111; Client: J. P. McHale, Mr. Fulger; Original Print Order: 2 ea[ch]; Size: 8x10; Finish: gl[ossy]; Job: 1-13-57; Year: 1934" -- on envelope front. "Operator's Report Name: Joe; 4 Original Photographs-Size: 8x10; Amount: 6.00" -- on envelope back.
DOI: 10.15468/dl.sfgqrn
title: Occurrence Download

description: A dataset containing 829 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Giraffa camelopardalis (Linnaeus, 1758)"
 ]
}

 The dataset includes 829 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085960-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-51150
title: Frigate, U.S.S. Constitution (Old Ironsides), Southern California, 1933

description: 7 photographs of the U.S.S. Constitution, Southern California, 1933. "Subject: Frigate Constitution (Old Ironsides); Client: Union Oil Co[mpany]; Original Print Order: 1 #5, 1- #2; Size: 11x14, 8x10; Finish: gl[ossy] lite; Mount: out of focus; Job: 32-23-111; Year: 1933; Classifications: E. misc[ellaneous]" -- on envelope front. "Original Photographs-Size: #2- [ilg] 12/44" -- on envelope back.
DOI: 10.15468/dl.h60krr
title: Occurrence Download

description: A dataset containing 829 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Giraffa camelopardalis (Linnaeus, 1758)"
 ]
}

 The dataset includes 829 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085966-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-51183
title: Boat Empress of Britain etc. at harbor, S.S. Pennsylvania, Southern California, 1933

description: 12 photographs of lighthouses and passenger ships, Empress of Britain and S.S. Pennsylvania at harbor, Southern California, 1933. "Subject: Boat Empress of Brittain [sic] etc. at Harbor, S.S. Pennsylvania; Client: Whittington; Classifications: T - passenger ships; Original Print Order: 1; Size: 8x10, Finish: gl[ossy]; Re-order: 1 #12, 1# 11, 8, 3, 6, 7, 1#3; Mount: (panel); Year: 1933; Job: 33-27-109" -- on envelope.
DOI: 10.25549/whit-c170-106305
title: Boy with snowman, California, 1942

description: 7 photographs of a boy with a snowman and throwing snowballs, California, 1942 January 20.