cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18553546
title: Analysis Scripts and Datasets for a Longitudinal Study on Yoga Nidra

description: This repository contains the Python scripts, Jupyter notebooks, and datasets for a longitudinal study comparing a Yoga Nidra intervention group (YN) with a waitlist control group (WC).

The repository includes:

• Raw and processed datasets used in the study  • Statistical analysis notebooks for demographic, parametric, and non-parametric testing  • Per-protocol sensitivity analyses  • Additional subgroup and robustness analyses  

Analyses cover clinical outcomes (PSQI, PSS, GAD-7, PHQ-9, POMS, SWLS) and cognitive measures (N-back tasks, Trail Making Test).

This Version 2 update includes:• Per-protocol (PP) analyses  • Additional statistical checks  • Updated notebooks and documentation  

To reproduce results:Keep CSV data files and notebooks in the same directory and run the notebooks sequentially.

Required libraries include:pandas, numpy, scipy, and tabulate.
DOI: 10.5281/zenodo.18554237
title: The Ingestive Response Reflects Neural Dynamics in Gustatory Cortex

description: Electrophysiology and Electromyographical data for the manuscript:



The Ingestive Response Reflects Neural Dynamics in Gustatory Cortex


Natasha Baas-Thomas, Abuzar Mahmood, Narendra Mukherjee, Kathleen C. Maigler, Yixi Wang, Donald B. Katz

bioRxiv 2025.10.01.679845; doi: https://doi.org/10.1101/2025.10.01.679845

 

Analysis code can be found at:

https://github.com/katzlabbrandeis/NBT_MTM_Analysis

https://github.com/katzlabbrandeis/blech_emg_classifier
DOI: 10.5281/zenodo.18554238
title: The Ingestive Response Reflects Neural Dynamics in Gustatory Cortex

description: Electrophysiology and Electromyographical data for the manuscript:



The Ingestive Response Reflects Neural Dynamics in Gustatory Cortex


Natasha Baas-Thomas, Abuzar Mahmood, Narendra Mukherjee, Kathleen C. Maigler, Yixi Wang, Donald B. Katz

bioRxiv 2025.10.01.679845; doi: https://doi.org/10.1101/2025.10.01.679845

 

Analysis code can be found at:

https://github.com/katzlabbrandeis/NBT_MTM_Analysis

https://github.com/katzlabbrandeis/blech_emg_classifier
DOI: 10.15468/dl.pr5uc4
title: Occurrence Download

description: A dataset containing 351 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Benin",
 "OccurrenceStatus is Present",
 "TaxonKey is Senna occidentalis",
 "Year 2015-2026"
 ]
}

 The dataset includes 351 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002986-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17866669
title: Morphological Informality Modelled Dataset in Abuja, Nigeria

description: This dataset represents the difference between planned and unplanned areas of the city as an indication of urban deprivation. Areas with higher levels of morphological informality are related to more deprived areas.Produced as part of the IDEAMAPS Data Ecosystem project, the work was supported, in whole or in part, by the Bill & Melinda Gates Foundation INV-045252. Under the grant conditions of the Foundation, a Creative Commons Attribution 4.0 Generic License has already been assigned to the Author Accepted Manuscript version that might arise from this submission. The findings and conclusions contained within are those of the authors and do not necessarily reflect positions or policies of the Bill & Melinda Gates Foundation.
DOI: 10.5281/zenodo.17866668
title: Morphological Informality Modelled Dataset in Abuja, Nigeria

description: This dataset represents the difference between planned and unplanned areas of the city as an indication of urban deprivation. Areas with higher levels of morphological informality are related to more deprived areas.Produced as part of the IDEAMAPS Data Ecosystem project, the work was supported, in whole or in part, by the Bill & Melinda Gates Foundation INV-045252. Under the grant conditions of the Foundation, a Creative Commons Attribution 4.0 Generic License has already been assigned to the Author Accepted Manuscript version that might arise from this submission. The findings and conclusions contained within are those of the authors and do not necessarily reflect positions or policies of the Bill & Melinda Gates Foundation.
DOI: 10.15468/dl.3ysc24
title: Occurrence Download

description: A dataset containing 309649 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "TaxonKey is Castor fiber"
 ]
}

 The dataset includes 309649 records from 603 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002960-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bkhuek
title: Occurrence Download

description: A dataset containing 5556141 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 5556141 records from 3166 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0297313-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rsjgeb
title: Occurrence Download

description: A dataset containing 545765 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acer campestre",
 "HasCoordinate is true"
 ]
}

 The dataset includes 545765 records from 2750 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008516-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dnuj8d
title: Occurrence Download

description: A dataset containing 14169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Polihierax semitorquatus)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 14169 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028704-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gkpp7r
title: Occurrence Download

description: A dataset containing 49678 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Genetta genetta"
 ]
}

 The dataset includes 49678 records from 665 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028703-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cqnk2g
title: Occurrence Download

description: A dataset containing 325 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carduus acanthoides",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 325 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028705-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.be7fd4
title: Occurrence Download

description: A dataset containing 395 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carduus acanthoides",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 395 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028706-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wgqejv
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carduus acanthoides",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 27 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028707-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r9bfq6
title: Occurrence Download

description: A dataset containing 1266 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Alvaradoa amorphoides"
 ]
}

 The dataset includes 1266 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028708-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.11588/duerer.online.687fa08e46591
title: Entwurf für eine Schwertscheide, https://d-nb.info/gnd/119426462X
DOI: 10.15468/dl.46qgc3
title: Occurrence Download

description: A dataset containing 403 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Subularia monticola",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 403 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028710-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.decpae
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agalinis calycina"
 ]
}

 The dataset includes 22 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028711-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48436/st7d6-wbe25
title: LongEval 2025 CORE Retrieval Test Collection

description: This collection consists of queries and documents extracted from the CORE scholarly literature search engine (https://core.ac.uk/). The queries in this collection were issued by CORE users, and a specific pipeline was designed to capture user queries, their corresponding search results, and user interactions. Using this pipeline, the dataset for this task was extracted, consisting of two main components: 






Search Information – includes unique (anonymous) identifiers for individual user sessions, search queries, and the returned results. 

Click Information – includes unique (anonymous) identifiers for individual user sessions, the links clicked within the results list, and the positions of the clicked links. 





The documents in the collection were selected based on the search results of user queries. In addition to these selected documents, the collection also contains randomly chosen documents from the CORE index. 




The test data was collected in January 2025. In total, the collection comprises 99 queries which were held out from the training queries (November 2024) and 492 test queries fopr the test data in January 2025. The document set consists of 124,045 downloaded, cleaned, and filtered scholarly articles. 




This collection serves as the official testing dataset for the 2025 LongEval Information Retrieval Lab (https://clef-longeval.github.io/), organized at CLEF. It includes the relevance assessments for the test queries.
DOI: 10.48436/v8phe-g8911
title: LongEval 2025 CORE Retrieval Test Collection

description: This collection consists of queries and documents extracted from the CORE scholarly literature search engine (https://core.ac.uk/). The queries in this collection were issued by CORE users, and a specific pipeline was designed to capture user queries, their corresponding search results, and user interactions. Using this pipeline, the dataset for this task was extracted, consisting of two main components: 






Search Information – includes unique (anonymous) identifiers for individual user sessions, search queries, and the returned results. 

Click Information – includes unique (anonymous) identifiers for individual user sessions, the links clicked within the results list, and the positions of the clicked links. 





The documents in the collection were selected based on the search results of user queries. In addition to these selected documents, the collection also contains randomly chosen documents from the CORE index. 




The test data was collected in January 2025. In total, the collection comprises 99 queries which were held out from the training queries (November 2024) and 492 test queries fopr the test data in January 2025. The document set consists of 124,045 downloaded, cleaned, and filtered scholarly articles. 




This collection serves as the official testing dataset for the 2025 LongEval Information Retrieval Lab (https://clef-longeval.github.io/), organized at CLEF. It includes the relevance assessments for the test queries.
DOI: 10.15468/dl.hy97v7
title: Occurrence Download

description: A dataset containing 754 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cuphea cordata"
 ]
}

 The dataset includes 754 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028709-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c64eaj
title: Occurrence Download

description: A dataset containing 566 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cichorium intybus",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 566 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028712-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3q6prq
title: Occurrence Download

description: A dataset containing 351820 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Callophrys rubi"
 ]
}

 The dataset includes 351820 records from 1675 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028601-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/6gd-gds-7fy
title: Thala secalina (A. Gould, 1860)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hms-bfp-7d3
title: Clionella J. E. Gray, 1847

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/26f-pz7-mjn
title: Macron aethiops (Reeve, 1847)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4yw-55l-f33
title: Marginella ornata Redfield, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f11-47x-z7x
title: Clausilia bidentata (Strøm, 1765)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hzk-s80-aqg
title: Mitrella dichroa (G. B. Sowerby I, 1844)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j3v-w12-rxq
title: Chondrina avenacea avenacea (Bruguière, 1792)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6qy-7z6-qx3
title: Gastrocopta curacoana Pilsbry, 1924

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xmq-1wb-0zr
title: Williamia gussoni (O. G. Costa, 1829)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ks9-0fm-ap5
title: Odostomia lukisii Jeffreys, 1859

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nfh-wl6-cv0
title: Chondrina arcadica clienta (Westerlund, 1883)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8ca-r5w-2tx
title: Mucronaria strauchi (O. Boettger, 1878)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9d4-h00-n7b
title: Falsuszafrona dicomata (Dall, 1889)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l2y-5wz-ak5
title: Retusa truncatula (Bruguière, 1792)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r31-jwy-y9v
title: Macrogastra rolphii (W. Turton, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/aqq-w9j-tqa
title: Euplica scripta (Lamarck, 1822)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1bf-d9m-51p
title: Colubraria testacea (Mörch, 1854)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lax-wta-e7h
title: Heliacus cylindricus (Gmelin, 1791)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c50-cr8-8d2
title: Lauria J. E. Gray, 1840

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rkz-4p8-kef
title: Oliva mustelina Lamarck, 1811

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zct-l60-hy0
title: Ellobium aurisjudae (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4vh-p43-aph
title: Siphonaria laciniosa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c7j-54h-0k6
title: Ancylus fluviatilis O. F. Müller, 1774

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f3j-ctc-la9
title: Siphonaria concinna G. B. Sowerby I, 1823

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yhb-snx-3s4
title: Oliva irisans Lamarck, 1811

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1rw-e86-p71
title: Henrya Bartsch, 1947

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cnm-dyd-tqa
title: Propebela harpularia (Couthouy, 1838)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eks-qhx-62p
title: Crassispira Swainson, 1840

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.16813499
title: Huge variation of interlayer coupling and electron hopping in 1T-TaSe2 resolved by angle-resolved photoemission spectroscopy

description: One fascinating aspect of correlated materials is that minor changes in system parameters may lead to huge variations in material properties. Here, utilizing small-spot angle-resolved photoemission spectroscopy (ARPES), we studied the diverse electronic phases that emerge on the surface of a correlated two-dimensional (2D) material 1T-TaSe2. Three electronic phases were resolved including a large-gap insulating phase, a small-gap insulating phase and a metallic phase. We characterized both the in-plane and out-of-plane band dispersions for three different phases. We found that the large-gap and small-gap insulating phases exhibit 2D properties. While the large-gap insulating phase could be attributed to a Mott insulator where the hopping of electrons across two nearest central Ta atoms is prohibited due to Coulomb repulsion, the small-gap insulating phase could be attributed to a band insulator where the highest occupied band is fully filled due to an even number stacking of TaSe2 layers. For the metallic phase, we observed a dispersive band along the out-of-plane direction, indicating its three-dimensional property. The in-plane band dispersion is highly anisotropic, suggesting that an anisotropic electron hopping is turned on in the metallic phase across different TaSe2 layers. Our detailed characterization of three different phases of 1T-TaSe2 indicates that the formation of star-of-David superstructures in the charge-density-wave (CDW) state of 1T-TaSe2 not only leads to a correlated insulating phase within one TaSe2 layer, but also constructs a distinct interlayer coupling that is highly sensitive to the CDW stacking order across different TaSe2 layers. As the stacking order changes, the interlayer coupling changes drastically which directly determines how electrons hop in 1T-TaSe2. Our observation explains the emergence of diverse electronic phases in 1T-TaSe2. It also highlights that the dimensionality and electronic transport properties of 1T-TaSe2 are highly tunable. They can be tuned by manipulating the phase difference between two adjacent CDW layers. Such manipulation does not break the lattice continuity and could be potentially used in developing nano-scale functional devices.