cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7976153.v1
title: Supplementary Material for: Localization of Four Allergens in <b><i>Artemisia</i></b> Pollen by Immunofluorescent Antibodies

description: <b><i>Background:</i></b> <i>Artemisia</i> pollens have a high potential to induce allergic symptoms. Seven allergen components have been identified, but only Art v 7 has been localized in the pollen grain. This study aimed to localize the allergens in the pollen grains of 4 <i>Artemisia</i> spp. <b><i>Methods:</i></b> Pollen extracts from 2 Chinese <i>Artemisia</i> spp., <i>A. argyi</i> and <i>A. annua</i>, were used to immunize BALB/c mice. Recombinant Art v 1 and Art v 3 allergens were used to select specific monoclonal antibodies (mAbs). Three mAbs were used to purify the natural allergens and were then analyzed by mass spectrometry. As reported previously, polyclonal antibodies were obtained from rabbits immunized with 3 synthesized peptides of Art an 7. Using conventional histology procedures with pollens from 4 <i>Artemisia</i> spp. (<i>A. argyi</i>, <i>A.</i> <i>annua</i>, <i>A. capilaris</i>, and <i>A. sieversiana</i>), allergen images were observed and recorded by fluorescence and confocal laser microscopy. <b><i>Results:</i></b> We obtained 2 specific mAbs against Art v 1, 1 against Art v 2, and 4 against Art v 3 homologs. The Art v 1 and Art v 3 homologs were mainly located on the pollen walls, and the Art v 7 homologous protein was localized intracellularly around nuclei. The location of the Art v 2 homologous protein varied across species, being intracellular around nuclei for <i>A. annua</i> and <i>A.</i> <i>argyi</i>, and in both the pollen wall and around nuclei for <i>A</i>. <i>capilaris</i> and <i>A.</i> <i>sieversiana</i>. <b><i>Conclusions:</i></b> Four mugwort allergens were localized in the pollen, and the major Art v 1 and Art v 3 allergens were located mainly in the pollen wall.
DOI: 10.6084/m9.figshare.12875397.v1
title: Additional file of Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain

description: Additional file of Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain
DOI: 10.6084/m9.figshare.7976072
title: Letter to the editor: switching treatment to lamivudine plus boosted atazanavir or darunavir in virologically suppressed HIV-infected patients – evidence from a large observational cohort

description: Letter to the editor: switching treatment to lamivudine plus boosted atazanavir or darunavir in virologically suppressed HIV-infected patients – evidence from a large observational cohort
DOI: 10.6084/m9.figshare.7976072.v1
title: Letter to the editor: switching treatment to lamivudine plus boosted atazanavir or darunavir in virologically suppressed HIV-infected patients – evidence from a large observational cohort

description: Letter to the editor: switching treatment to lamivudine plus boosted atazanavir or darunavir in virologically suppressed HIV-infected patients – evidence from a large observational cohort
DOI: 10.6084/m9.figshare.7976021
title: Modeling energetic electron nonlinear wave-particle interactions with electromagnetic ion cyclotron waves

description: Data formats in ASCII and Matlab mat file. Data contents are self-explanatory by file names.
DOI: 10.6084/m9.figshare.7976015
title: Human health risk assessment of toxic elements in fish species collected from the river Buriganga, Bangladesh

description: Multielement (48) analysis was carried out of various fish species collected from river Buriganga, the most polluted river in Bangladesh to assess human health risk by toxic elements. Sixteen elements that is, Be, V, Cr, Mn, Ni, Cu, Zn, As, Se, Mo, Cd, Ba, Hg, Pb, Bi, and U, were taken into account due to their toxicities on human health. Results show that concentrations of elements in various fish species were higher in winter than those in monsoon. Among 16 elements, Mn, Cu, Zn, Cd, Ba, Pb were above Food Safety Guideline in some fishes in winter. THQ and TTHQ/HI values were less than 1 for all fishes in monsoon while THQ and TTHW/HI values were more than 1 for most of fishes in winter. These results suggesting non-carcinogenic health hazard through consumption of contaminated fishes. Only As showed low cancer risk while no cancer risk was observed for other toxic elements in monsoon. In winter, Pb showed only moderate cancer risk for <i>Mystus vittatus</i> (site-7) while for other fishes low cancer risk was found by Pb. It can therefore be concluded that there is human health risk in consuming of fishes collected from river Buriganga especially in winter.
DOI: 10.6084/m9.figshare.7975997
title: Interactive L2 vocabulary acquisition in a lab-based immersion setting

description: We investigated to what extent L2 word learning in spoken interaction takes place when learners are unaware of taking part in a language learning study. Using a novel paradigm for approximating naturalistic (but not necessarily non-intentional) L2 learning in the lab, German learners of Dutch were led to believe that the study concerned judging the price of objects. Dutch target words (object names) were selected individually such that these words were unknown to the respective participant. Then, in a dialogue-like task with the experimenter, the participants were first exposed to and then tested on the target words. In comparison to a no-input control group, we observed a clear learning effect especially from the first two exposures, and better learning for cognates than for non-cognates, but no modulating effect of the exposure-production lag. Moreover, some of the acquired knowledge persisted over a six-month period.
DOI: 10.6084/m9.figshare.7976015.v1
title: Human health risk assessment of toxic elements in fish species collected from the river Buriganga, Bangladesh

description: Multielement (48) analysis was carried out of various fish species collected from river Buriganga, the most polluted river in Bangladesh to assess human health risk by toxic elements. Sixteen elements that is, Be, V, Cr, Mn, Ni, Cu, Zn, As, Se, Mo, Cd, Ba, Hg, Pb, Bi, and U, were taken into account due to their toxicities on human health. Results show that concentrations of elements in various fish species were higher in winter than those in monsoon. Among 16 elements, Mn, Cu, Zn, Cd, Ba, Pb were above Food Safety Guideline in some fishes in winter. THQ and TTHQ/HI values were less than 1 for all fishes in monsoon while THQ and TTHW/HI values were more than 1 for most of fishes in winter. These results suggesting non-carcinogenic health hazard through consumption of contaminated fishes. Only As showed low cancer risk while no cancer risk was observed for other toxic elements in monsoon. In winter, Pb showed only moderate cancer risk for <i>Mystus vittatus</i> (site-7) while for other fishes low cancer risk was found by Pb. It can therefore be concluded that there is human health risk in consuming of fishes collected from river Buriganga especially in winter.
DOI: 10.6084/m9.figshare.7975664
title: Investigation of the genetic structure of Kabyle and Chaouia Algerian populations through the polymorphism of Alu insertion markers

description: <b>Background:</b> In Algeria, as in all North Africa, Berbers constitute the old background of the population. Today, Berber speakers account for only ∼ 25% of Algerians. This decline is the product of a complex human settlement from pre-history to recent invaders. <b>Aim:</b> This study aims to determine the genetic diversity level within a sample of five Algerian Berber speaking populations in order to contribute to resolving issues about the North African population settlement. <b>Subjects and methods:</b> Two Algerian Berber groups (Kabyle and Chaouia), originated from five administrative regions from Algeria, were typed for 11 Alu Insertions. Analysis has been based on <i>Fst</i> genetic distance, AMOVA, NMDS and distance to the centroid model. <b>Results:</b> No genetic differentiation has been observed between all Algerian Berbers discarding any geographical or ethnic effect. Comparative analyses based on <i>Fst</i> genetic distance did not show significant affinities between North Africans and either South Europeans or Middle Easterners, except genetic proximity between Algerians and Iberians. The amount of genetic diversity among Algerians and North African populations detected by the distance to the centroid model was significant compared with other North Mediterranean populations. <b>Conclusion:</b> A strong genetic homogeneity has been found between Algerian Berbers. Global genetic diversity based on Alu markers is following the isolation by distance model, except for some European populations.
DOI: 10.6084/m9.figshare.7975664.v1
title: Investigation of the genetic structure of Kabyle and Chaouia Algerian populations through the polymorphism of Alu insertion markers

description: <b>Background:</b> In Algeria, as in all North Africa, Berbers constitute the old background of the population. Today, Berber speakers account for only ∼ 25% of Algerians. This decline is the product of a complex human settlement from pre-history to recent invaders. <b>Aim:</b> This study aims to determine the genetic diversity level within a sample of five Algerian Berber speaking populations in order to contribute to resolving issues about the North African population settlement. <b>Subjects and methods:</b> Two Algerian Berber groups (Kabyle and Chaouia), originated from five administrative regions from Algeria, were typed for 11 Alu Insertions. Analysis has been based on <i>Fst</i> genetic distance, AMOVA, NMDS and distance to the centroid model. <b>Results:</b> No genetic differentiation has been observed between all Algerian Berbers discarding any geographical or ethnic effect. Comparative analyses based on <i>Fst</i> genetic distance did not show significant affinities between North Africans and either South Europeans or Middle Easterners, except genetic proximity between Algerians and Iberians. The amount of genetic diversity among Algerians and North African populations detected by the distance to the centroid model was significant compared with other North Mediterranean populations. <b>Conclusion:</b> A strong genetic homogeneity has been found between Algerian Berbers. Global genetic diversity based on Alu markers is following the isolation by distance model, except for some European populations.
DOI: 10.6084/m9.figshare.7975997.v1
title: Interactive L2 vocabulary acquisition in a lab-based immersion setting

description: We investigated to what extent L2 word learning in spoken interaction takes place when learners are unaware of taking part in a language learning study. Using a novel paradigm for approximating naturalistic (but not necessarily non-intentional) L2 learning in the lab, German learners of Dutch were led to believe that the study concerned judging the price of objects. Dutch target words (object names) were selected individually such that these words were unknown to the respective participant. Then, in a dialogue-like task with the experimenter, the participants were first exposed to and then tested on the target words. In comparison to a no-input control group, we observed a clear learning effect especially from the first two exposures, and better learning for cognates than for non-cognates, but no modulating effect of the exposure-production lag. Moreover, some of the acquired knowledge persisted over a six-month period.
DOI: 10.6084/m9.figshare.7975508
title: Additional file 9: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: Differentially Expressed Genes. Contains TPM values for each replicate for genes called as differentially expressed by one of edgeR, CyberT, or FCros. (XLS 1458 kb)
DOI: 10.6084/m9.figshare.7975502
title: Additional file 7: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: Differentially marked Islands called by SICER. Table of islands called as differentially marked by SICER, with genomic location, mark levels, and mark type. (XLS 3107 kb)
DOI: 10.6084/m9.figshare.7975505
title: Additional file 8: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: Diffreps results. Table of regions with significant mark island differences between GH and SH males, as reported by Diffreps. (XLS 665 kb)
DOI: 10.6084/m9.figshare.7975508.v1
title: Additional file 9: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: Differentially Expressed Genes. Contains TPM values for each replicate for genes called as differentially expressed by one of edgeR, CyberT, or FCros. (XLS 1458 kb)
DOI: 10.6084/m9.figshare.7975502.v1
title: Additional file 7: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: Differentially marked Islands called by SICER. Table of islands called as differentially marked by SICER, with genomic location, mark levels, and mark type. (XLS 3107 kb)
DOI: 10.6084/m9.figshare.7975505.v1
title: Additional file 8: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: Diffreps results. Table of regions with significant mark island differences between GH and SH males, as reported by Diffreps. (XLS 665 kb)
DOI: 10.6084/m9.figshare.7975487
title: Additional file 20: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: Changes for Diffreps and Ngs.plot for Drosophila genome 6.02. Minor changes were made in Diffreps and ngs.plot local copies to add D. melanogaster genome release 6.02 to the set of genomes. (ZIP 6257 kb)
DOI: 10.6084/m9.figshare.7975487.v1
title: Additional file 20: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: Changes for Diffreps and Ngs.plot for Drosophila genome 6.02. Minor changes were made in Diffreps and ngs.plot local copies to add D. melanogaster genome release 6.02 to the set of genomes. (ZIP 6257 kb)
DOI: 10.6084/m9.figshare.7975466
title: Additional file 15: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: Genes activated by cbt. Columns C-E and F-H are from Bartok et al. 2015. C-E are transcript levels in controls, F-H are transcript levels in cbt-RNAi. Columns I-O show mean normalized log2 FC between GH and SH in our experiments. Worksheet 2 gives statistics and a bar chart of the data for comparisons between repressed and activated by Cbt gene groups, for mRNA and for the 6 epigenetic marks. (XLS 145 kb)
DOI: 10.6084/m9.figshare.7975469
title: Additional file 16: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: Multiple regressions on TF putative binding sites. Gives details (slope, t, F, p) of multiple regressions of the change in transcription for genes in the named group, based on independent variables the number of putative TF binding sites for the named TFs. (TXT 3 kb)
DOI: 10.6084/m9.figshare.7975475
title: Additional file 17: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: ANOVA results for RNAi knockdown effects on sleep. Results of performing Type III ANOVA to detect the interaction effect of TH-GAL4 and UAS-RNAi on Î sleep. See detailed comments at beginning of file. (TXT 6 kb)
DOI: 10.6084/m9.figshare.7975463
title: Additional file 14: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: Genes repressed by cbt. Columns C-E and F-H are from Bartok et al. 2015. C-E are transcript levels in controls, F-H are transcript levels in cbt-RNAi. Columns I-O show mean normalized log2 FC between GH and SH in our experiments. (XLS 383 kb)
DOI: 10.6084/m9.figshare.7975466.v1
title: Additional file 15: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: Genes activated by cbt. Columns C-E and F-H are from Bartok et al. 2015. C-E are transcript levels in controls, F-H are transcript levels in cbt-RNAi. Columns I-O show mean normalized log2 FC between GH and SH in our experiments. Worksheet 2 gives statistics and a bar chart of the data for comparisons between repressed and activated by Cbt gene groups, for mRNA and for the 6 epigenetic marks. (XLS 145 kb)
DOI: 10.6084/m9.figshare.7975469.v1
title: Additional file 16: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: Multiple regressions on TF putative binding sites. Gives details (slope, t, F, p) of multiple regressions of the change in transcription for genes in the named group, based on independent variables the number of putative TF binding sites for the named TFs. (TXT 3 kb)
DOI: 10.6084/m9.figshare.7975475.v1
title: Additional file 17: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: ANOVA results for RNAi knockdown effects on sleep. Results of performing Type III ANOVA to detect the interaction effect of TH-GAL4 and UAS-RNAi on Î sleep. See detailed comments at beginning of file. (TXT 6 kb)
DOI: 10.6084/m9.figshare.7975463.v1
title: Additional file 14: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: Genes repressed by cbt. Columns C-E and F-H are from Bartok et al. 2015. C-E are transcript levels in controls, F-H are transcript levels in cbt-RNAi. Columns I-O show mean normalized log2 FC between GH and SH in our experiments. (XLS 383 kb)
DOI: 10.6084/m9.figshare.7975457
title: Additional file 12: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: TFs overrepresented in k-means clusters. The tab-delimited table shows the level of overrepresentation (column 3) of genes with putative binding motifs of the TF in column 2, in each of the 8â k-means clusters (column 1). (TXT 1 kb)
DOI: 10.6084/m9.figshare.7975460
title: Additional file 13: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: ARG gene fold changes. Column B gives fold changes (FC) between Group and Single housed in our experiments, for 9 genes labeled ARG in Croset et al. [84]. (XLS 30 kb)
DOI: 10.6084/m9.figshare.7975457.v1
title: Additional file 12: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: TFs overrepresented in k-means clusters. The tab-delimited table shows the level of overrepresentation (column 3) of genes with putative binding motifs of the TF in column 2, in each of the 8â k-means clusters (column 1). (TXT 1 kb)
DOI: 10.6084/m9.figshare.7975460.v1
title: Additional file 13: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: ARG gene fold changes. Column B gives fold changes (FC) between Group and Single housed in our experiments, for 9 genes labeled ARG in Croset et al. [84]. (XLS 30 kb)
DOI: 10.6084/m9.figshare.7975445
title: Additional file 10: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: Gorilla and DAVID functional analysis. The zip file contains top level html files which may be opened in a browser. These will give the Gorilla functional analysis and DAVID GO analyses referred to in the main text. (ZIP 919 kb)
DOI: 10.6084/m9.figshare.7975445.v1
title: Additional file 10: of Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons

description: Gorilla and DAVID functional analysis. The zip file contains top level html files which may be opened in a browser. These will give the Gorilla functional analysis and DAVID GO analyses referred to in the main text. (ZIP 919 kb)
DOI: 10.6084/m9.figshare.7975421
title: Additional file 8: of The CIMP-high phenotype is associated with energy metabolism alterations in colon adenocarcinoma

description: Table S4. Differential expression profiles of â TCA cycleâ KEGG pathway genes in CIMP-high colon adenocarcinomas compared to non-CIMP tumors (TCGA data). The color scale indicates the degree of change. (XLSX 166 kb)
DOI: 10.6084/m9.figshare.7975421.v1
title: Additional file 8: of The CIMP-high phenotype is associated with energy metabolism alterations in colon adenocarcinoma

description: Table S4. Differential expression profiles of â TCA cycleâ KEGG pathway genes in CIMP-high colon adenocarcinomas compared to non-CIMP tumors (TCGA data). The color scale indicates the degree of change. (XLSX 166 kb)
DOI: 10.6084/m9.figshare.7975409
title: Additional file 6: of The CIMP-high phenotype is associated with energy metabolism alterations in colon adenocarcinoma

description: Table S3. Differential expression profiles of â Glycolysis/Gluconeogenesisâ KEGG pathway genes in CIMP-high colon adenocarcinomas compared to non-CIMP ones (TCGA data). The color scale indicates the degree of change. (XLSX 266 kb)
DOI: 10.6084/m9.figshare.7975409.v1
title: Additional file 6: of The CIMP-high phenotype is associated with energy metabolism alterations in colon adenocarcinoma

description: Table S3. Differential expression profiles of â Glycolysis/Gluconeogenesisâ KEGG pathway genes in CIMP-high colon adenocarcinomas compared to non-CIMP ones (TCGA data). The color scale indicates the degree of change. (XLSX 266 kb)
DOI: 10.6084/m9.figshare.7975394
title: Additional file 4: of The CIMP-high phenotype is associated with energy metabolism alterations in colon adenocarcinoma

description: Table S2. Differential expression profiles of â TCA cycleâ KEGG pathway genes and transcripts in colon adenocarcinomas compared to normal tissues (TCGA data). The color scale indicates the degree of change. (XLSX 516 kb)