cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19646254.v1
title: Additional file 1 of Vascular function of the T3/modern clade WUSCHEL-Related HOMEOBOX transcription factor genes predate apical meristem-maintenance function

description: Additional file 1.
DOI: 10.6084/m9.figshare.19646286.v1
title: Additional file 1 of Everybody nose: molecular and clinical characteristics of nasal colonization during active methicillin-resistant Staphylococcus aureus bloodstream infection

description: Additional file 1: Table S1. MRSA isolate typing.
DOI: 10.6084/m9.figshare.19646286
title: Additional file 1 of Everybody nose: molecular and clinical characteristics of nasal colonization during active methicillin-resistant Staphylococcus aureus bloodstream infection

description: Additional file 1: Table S1. MRSA isolate typing.
DOI: 10.6084/m9.figshare.19646299
title: Additional file 2 of Association between Mycobacterium tuberculosis genotype and diabetes mellitus/hypertension: a molecular study

description: Additional file 2. Data S1. Best matching database-strain lineage of similarity.
DOI: 10.6084/m9.figshare.19646299.v1
title: Additional file 2 of Association between Mycobacterium tuberculosis genotype and diabetes mellitus/hypertension: a molecular study

description: Additional file 2. Data S1. Best matching database-strain lineage of similarity.
DOI: 10.6084/m9.figshare.19646302.v1
title: Additional file 3 of Association between Mycobacterium tuberculosis genotype and diabetes mellitus/hypertension: a molecular study

description: Additional file 3. Data S2. Information of 24 loci MIRU-VNTR.
DOI: 10.6084/m9.figshare.19646302
title: Additional file 3 of Association between Mycobacterium tuberculosis genotype and diabetes mellitus/hypertension: a molecular study

description: Additional file 3. Data S2. Information of 24 loci MIRU-VNTR.
DOI: 10.5281/zenodo.4923187
title: Motus: A dataset of higher-order Ambisonic room impulse responses and 3D models measured in a room with varying furniture

description: The Motus dataset is a dataset of higher-order Ambisonic room impulse responses. The measurements took place in a single room while varying the amount and placement of furniture. 830 different room configurations were measured with four source-to-receiver configurations, resulting in 3320 room impulse responses in total. The dataset features various furniture object placements, including non-uniform distributions of absorptive material and cases with occluded direct paths between source and receiver. All acoustic measurements are accompanied by matching 3D models and 360°-photographs of the room. The dataset can be used to investigate room acoustic topics such as the acoustic effects of absorber placements or the decay behavior of rooms. A paper about the dataset has been published at the International Conference on Immersive and 3D Audio (I3DA, https://www.i3da.eu), 8-10 September 2021. In the paper, we describe the dataset and demonstrate its usage with a reverberation time analysis. The analysis reveals that most of our measurements follow the expected relationship between absorption area and reverberation time. Some exceptional cases feature particular room acoustic phenomena, such as non-uniform absorption area distributions or multi-slope decays. Additionally, we show with a large number of measurements that furniture placement can significantly affect the reverberation time of a room. The best_of.zip contains a smaller portion of the dataset for trying out some analyses before downloading the entire dataset.
description: Correspondence to georg.gotz@aalto.fi
DOI: 10.5281/zenodo.4923186
title: Motus: A dataset of higher-order Ambisonic room impulse responses and 3D models measured in a room with varying furniture

description: The Motus dataset is a dataset of higher-order Ambisonic room impulse responses. The measurements took place in a single room while varying the amount and placement of furniture. 830 different room configurations were measured with four source-to-receiver configurations, resulting in 3320 room impulse responses in total. The dataset features various furniture object placements, including non-uniform distributions of absorptive material and cases with occluded direct paths between source and receiver. All acoustic measurements are accompanied by matching 3D models and 360°-photographs of the room. The dataset can be used to investigate room acoustic topics such as the acoustic effects of absorber placements or the decay behavior of rooms. A paper about the dataset has been published at the International Conference on Immersive and 3D Audio (I3DA, https://www.i3da.eu), 8-10 September 2021. In the paper, we describe the dataset and demonstrate its usage with a reverberation time analysis. The analysis reveals that most of our measurements follow the expected relationship between absorption area and reverberation time. Some exceptional cases feature particular room acoustic phenomena, such as non-uniform absorption area distributions or multi-slope decays. Additionally, we show with a large number of measurements that furniture placement can significantly affect the reverberation time of a room. The best_of.zip contains a smaller portion of the dataset for trying out some analyses before downloading the entire dataset.
description: Correspondence to georg.gotz@aalto.fi
DOI: 10.17043/hartung-2022-aoscm-1
title: Atmosphere-ocean coupled single-column model (AOSCM) simulations for a point in the Arctic Ocean, 1⁠ – 3 August 2014
DOI: 10.6084/m9.figshare.19454042
title: Supplementary Material for: Use of Prophylactic Antibiotics to Prevent Urinary Tract Infection After Urodynamic Testing and Cystoscopy in Women: A Practice Pattern Study

description: Objectives: To determine practice patterns of prescribing prophylactic antibiotics against urinary tract infection (UTI) for urodynamic studies (UDS) and outpatient cystoscopy in women. Design: A cross-sectional survey study was conducted of North American female pelvic medicine and reconstructive specialists (FPMRS). Methods: An online survey was used to assess prophylactic prescribing patterns of FPMRS specialists that perform UDS and outpatient cystoscopy. This survey was developed and then electronically disseminated through the American Urogynecologic Society to 699 eligible physicians. Results: A total of 138 surveys were completed. Approximately half of physicians did not prescribe any antibiotic prophylaxis for UDS or for cystoscopy (54% and 43%, respectively). For patients with perceived risk factors (recurrent urinary tract infections, immunosuppression, known neurogenic lower urinary tract dysfunction, indwelling catheter use, elevated post void residual/bladder outlet obstruction, genitourinary anomalies, and diabetes), 32% and 41% of physicians prescribed antibiotic prophylaxis for UDS and cystoscopy, respectively. A minority of physicians always prescribed antibiotics for UDS and cystoscopy (13% and 17%, respectively). Limitations: The response rate was a limitation of the study, however, this rate is in keeping with other physician survey studies published within this subspecialty. Selection and response biases may have contributed to the results of this survey study. Conclusion: There was no uniform approach to urinary tract infection prophylaxis for UDS and outpatient cystoscopy in women which reflects the lack of current guidelines and the low level of evidence on which they are based. This non-uniform practice calls for more research to better define an evidence-based standard of care.
DOI: 10.6084/m9.figshare.19646265
title: source data.xlsx

description: This is source data and supplementary table 1 for the article.
DOI: 10.6084/m9.figshare.19646265.v1
title: source data.xlsx

description: This is source data and supplementary table 1 for the article.
DOI: 10.6084/m9.figshare.19646337
title: DataRepository.tar.gz

description: Experimental results and plots associated to the work "On the Choice of the Best Chunk Size for the Speculative Execution of Loops", by Estebanez et al.
DOI: 10.6084/m9.figshare.19646337.v1
title: DataRepository.tar.gz

description: Experimental results and plots associated to the work "On the Choice of the Best Chunk Size for the Speculative Execution of Loops", by Estebanez et al.
DOI: 10.6084/m9.figshare.19646464
title: Risk scores from Accounting for direct and indirect cumulative effects of anthropogenic pressures on salmon- and herring-linked land and ocean ecosystems

description: Baseline raw risk metrics for ecosystem components - Exposure, Consequence, Uncertainty
DOI: 10.6084/m9.figshare.19646464.v1
title: Risk scores from Accounting for direct and indirect cumulative effects of anthropogenic pressures on salmon- and herring-linked land and ocean ecosystems

description: Baseline raw risk metrics for ecosystem components - Exposure, Consequence, Uncertainty
DOI: 10.6084/m9.figshare.19646473
title: Expert elicitation spreadsheet from Accounting for direct and indirect cumulative effects of anthropogenic pressures on salmon- and herring-linked land and ocean ecosystems

description: Salmon and herring support both land and ocean predators and are critical to ecosystem resilience. Their linkages across land and sea realms make them highly susceptible to human activities, which can have flow-on effects up the food web. We quantify and compare the potential cumulative effects of human-driven pressures on interdependent species in salmon- and herring-linked ecosystems of western Canada using a risk assessment methodology. Adding indirect risks resulted in 68% greater total risks for land species than for direct risk alone, versus 15% for marine species. Inclusion of climate change pressures resulted in the greatest change in risk for low trophic marine species and habitats (greater than 25% increase). Forestry-related pressures accounted for the highest risk to all species and projected management of these pressures resulted in a total reduction of risk across all ecosystem components that was greater than 14% greater than management of fisheries pressures. Ignoring land food web linkages and pressures resulted in missing greater than 40% of the total cumulative risk for salmon and herring. This simple framework can be used to evaluate potential risk of existing human uses and future change to inform immediate management of linked land-sea ecosystems and help species avoid the ‘death by a thousand cuts'.This article is part of the theme issue ‘Nurturing resilient marine ecosystems’ compiled and edited by Daniela Schmidt and Tayanah O'.
DOI: 10.6084/m9.figshare.19646473.v1
title: Expert elicitation spreadsheet from Accounting for direct and indirect cumulative effects of anthropogenic pressures on salmon- and herring-linked land and ocean ecosystems

description: Salmon and herring support both land and ocean predators and are critical to ecosystem resilience. Their linkages across land and sea realms make them highly susceptible to human activities, which can have flow-on effects up the food web. We quantify and compare the potential cumulative effects of human-driven pressures on interdependent species in salmon- and herring-linked ecosystems of western Canada using a risk assessment methodology. Adding indirect risks resulted in 68% greater total risks for land species than for direct risk alone, versus 15% for marine species. Inclusion of climate change pressures resulted in the greatest change in risk for low trophic marine species and habitats (greater than 25% increase). Forestry-related pressures accounted for the highest risk to all species and projected management of these pressures resulted in a total reduction of risk across all ecosystem components that was greater than 14% greater than management of fisheries pressures. Ignoring land food web linkages and pressures resulted in missing greater than 40% of the total cumulative risk for salmon and herring. This simple framework can be used to evaluate potential risk of existing human uses and future change to inform immediate management of linked land-sea ecosystems and help species avoid the ‘death by a thousand cuts'.This article is part of the theme issue ‘Nurturing resilient marine ecosystems’ compiled and edited by Daniela Schmidt and Tayanah O'.
DOI: 10.6084/m9.figshare.19493161
title: Is there a role for small molecule metabolite biomarkers in the development of a diagnostic test for endometriosis?

description: Endometriosis is a disease defined by the presence of benign lesions of endometrial-like glands and stroma outside the endometrial cavity. Affecting an estimated 11.4% of Australian women, symptoms include chronic pelvic pain, dysmenorrhea and infertility. The current gold standard of diagnosis requires an expensive and invasive laparoscopic surgery, resulting in delayed time to treatment. The identification of a non-invasive endometriosis biomarker – a measurable factor correlating with disease presence or activity – has therefore become a priority in endometriosis research, although no biomarker has yet been validated. As small molecule metabolites and lipids have emerged as a potential focus, this review with systematic approach, aims to summarize studies examining metabolomic biomarkers of endometriosis in order to guide future research. EMBASE, PubMed and Web of Science were searched using keywords: <i>lipidomics</i> OR <i>metabolomics</i> OR <i>metabolome</i> AND <i>diagnostic tests</i> OR <i>biomarkers</i> AND <i>endometriosis</i>, and only studies written in English from August 2000 to August 2020 were included. Twenty-nine studies met inclusion and exclusion criteria and were included. These studies identified potential biomarkers in serum, ectopic tissue, eutopic endometrium, peritoneal fluid, follicular fluid, urine, cervical swabs and endometrial fluid. Glycerophospholipids were identified as potential biomarkers in all specimens, except urine and cervical swab specimens. However, no individual molecule or metabolite combination has reached clinical diagnostic utility. Further research using large study populations with robust patient phenotype and specimen characterisation is required if we are to make progress in identifying and validating a non-invasive diagnostic test for endometriosis.
DOI: 10.6084/m9.figshare.19493161.v1
title: Is there a role for small molecule metabolite biomarkers in the development of a diagnostic test for endometriosis?

description: Endometriosis is a disease defined by the presence of benign lesions of endometrial-like glands and stroma outside the endometrial cavity. Affecting an estimated 11.4% of Australian women, symptoms include chronic pelvic pain, dysmenorrhea and infertility. The current gold standard of diagnosis requires an expensive and invasive laparoscopic surgery, resulting in delayed time to treatment. The identification of a non-invasive endometriosis biomarker – a measurable factor correlating with disease presence or activity – has therefore become a priority in endometriosis research, although no biomarker has yet been validated. As small molecule metabolites and lipids have emerged as a potential focus, this review with systematic approach, aims to summarize studies examining metabolomic biomarkers of endometriosis in order to guide future research. EMBASE, PubMed and Web of Science were searched using keywords: <i>lipidomics</i> OR <i>metabolomics</i> OR <i>metabolome</i> AND <i>diagnostic tests</i> OR <i>biomarkers</i> AND <i>endometriosis</i>, and only studies written in English from August 2000 to August 2020 were included. Twenty-nine studies met inclusion and exclusion criteria and were included. These studies identified potential biomarkers in serum, ectopic tissue, eutopic endometrium, peritoneal fluid, follicular fluid, urine, cervical swabs and endometrial fluid. Glycerophospholipids were identified as potential biomarkers in all specimens, except urine and cervical swab specimens. However, no individual molecule or metabolite combination has reached clinical diagnostic utility. Further research using large study populations with robust patient phenotype and specimen characterisation is required if we are to make progress in identifying and validating a non-invasive diagnostic test for endometriosis.
DOI: 10.14457/cu.the.2008.2151
title: การเมืองว่าด้วยการต่อสู้ทางชนชั้นในประเทศไทยจาก พ.ศ.2535 ถึง พ.ศ.2549

description: งานวิจัยชิ้นนี้มีเป้าหมายเพื่ออธิบายความเปลี่ยนแปลงทางการเมืองของสังคมการเมืองไทยนับตั้งแต่เหตุการณ์พฤษภาประชาธรรมในปี ๒๕๓๕ จนถึงการทำรัฐประหารในเดือนกันยายน ปี ๒๕๔๙ ผลการวิจัยพบว่า ความเปลี่ยนแปลงทางการเมืองไทยหลังปี ๒๕๓๕ ทั้งหมดล้วนเกิดขึ้นจากปฏิสัมพันธ์ทางอำนาจระหว่างกลุ่มพลังทางสังคม ๓ กลุ่มหลัก คือ สถาบันพระมหากษัตริย์ นายทุนนักธุรกิจ และขบวนการภาคประชาชน โดยภายหลังจากวิกฤตเศรษฐกิจในปี ๒๕๔๐ สถาบันพระมหากษัตริย์สามารถสถาปนาพระราชอำนาจนำเหนือกลุ่มพลังทางสังคมอื่นๆทั้งหมด โดยสถาบันพระมหากษัตริย์ได้กลายมาเป็นผู้มีอำนาจนำสูงสุดของกลุ่มก้อนทางประวัติศาสตร์ (historic bloc) ที่เรียกว่า “กลุ่มก้อนทางประวัติศาสตร์แบบชุมชน-ชาตินิยมที่มีพระมหากษัตริย์เป็นผู้นำ” ซึ่งเป็นกลุ่มก้อนที่มีลักษณะข้ามชนชั้น (cross-class alliance) และผูกโยงกันผ่านวาทกรรมชุมชนนิยม ชาตินิยม และเศรษฐกิจพอเพียง ส่งผลให้การเคลื่อนไหวทางการเมืองของขบวนการภาคประชาชน และการขึ้นสู่อำนาจในปี ๒๕๔๔ และการเสื่อมอำนาจของรัฐบาลพรรคไทยรักไทยในปี ๒๕๔๙ จะไม่สามารถเกิดขึ้นได้หากปราศจากการรับรองหรือสร้างความชอบธรรมจากพระราชอำนาจเหนือกลุ่มก้อนทางประวัติศาสตร์ที่ประกอบไปด้วยกลุ่มพลังของสถาบันพระมหากษัตริย์ และ กลุ่มพลังของขบวนการภาคประชาชน
DOI: 10.25345/c5mw28j5q
title: MassIVE MSV000089305 - HT-29 mouse xenograft mediated proteomic profiling of metabolic proteins as potential biomarkers of radioresponsiveness for colorectal cancer
title: Using a mouse model inoculated with human CRC cells (HT-29-Red-Fluc), we have shortlisted some specific metabolic proteins that are differentially expressed in tumours that responded well to radiation treatment.
DOI: 10.6084/m9.figshare.19525681.v3
title: Table_S6_158_samples

description: Bacterial samples (158, 5.3% of total) with a much higher aPMNLE for all proteins than the chromosomal ones alone. This indicated that the plasmid-related proteins contributed more indirect PPIs.
DOI: 10.25345/c5h41jr1w
title: MassIVE MSV000089306 - GNPS Phoenicin switch: Penicillium atrosanguineum on various growth media
title: Part of the publication: Phoenicin Switch: Discovering the trigger for radical phoenicin production in multiple wild type Penicillium species.
DOI: 10.6084/m9.figshare.19323563
title: Supplemental Table S1.docx

description: Summary of the statistical analysis for all herd variables, univariable analysis and the regression models.
DOI: 10.6084/m9.figshare.19323563.v4
title: Supplemental Table S1.docx

description: Summary of the statistical analysis for all herd variables, univariable analysis and the regression models.
DOI: 10.6084/m9.figshare.19323563.v3
title: Supplemental Table S1.docx

description: Summary of the statistical analysis for all herd variables, univariable analysis and the regression models.
DOI: 10.6084/m9.figshare.19614580
title: Proxy dataset from The hamstrings to quadriceps functional ratio expressed over the full angle-angular velocity range using a limited number of data points

description: This file contains a typical torque/angle/angular velocity proxy dataset from an isokinetic dynamometer from knee extension/flexion.
DOI: 10.6084/m9.figshare.19614583
title: Raw ratio points calculator from The hamstrings to quadriceps functional ratio expressed over the full angle-angular velocity range using a limited number of data points

description: This script creates the raw ratio points used in the fit of the Re function for 11, 14, and 17-point fits. Use with the proxy dataset provided
DOI: 10.6084/m9.figshare.19614586
title: Supplementary material from The hamstrings to quadriceps functional ratio expressed over the full angle-angular velocity range using a limited number of data points

description: The hamstring-to-quadriceps (H:Q) strength ratio is widely used to identify individuals at risk of sustaining hamstring strain injuries. However, its efficacy is not supported by the current evidence. Current methods for the calculation of the H:Q ratio provide only a one- or two-dimensional ratio, often ignoring fundamental muscle mechanical properties. Based on isokinetic torque measurements of the knee flexors and extensors (<sup>−1</sup><i>R</i><sup>2</sup> = 0.84 − 0.96
DOI: 10.6084/m9.figshare.19614580.v2
title: Proxy dataset from The hamstrings to quadriceps functional ratio expressed over the full angle-angular velocity range using a limited number of data points

description: This file contains a typical torque/angle/angular velocity proxy dataset from an isokinetic dynamometer from knee extension/flexion.
DOI: 10.6084/m9.figshare.19614583.v2
title: Raw ratio points calculator from The hamstrings to quadriceps functional ratio expressed over the full angle-angular velocity range using a limited number of data points

description: This script creates the raw ratio points used in the fit of the Re function for 11, 14, and 17-point fits. Use with the proxy dataset provided
DOI: 10.6084/m9.figshare.19614586.v2
title: Supplementary material from The hamstrings to quadriceps functional ratio expressed over the full angle-angular velocity range using a limited number of data points

description: The hamstring-to-quadriceps (H:Q) strength ratio is widely used to identify individuals at risk of sustaining hamstring strain injuries. However, its efficacy is not supported by the current evidence. Current methods for the calculation of the H:Q ratio provide only a one- or two-dimensional ratio, often ignoring fundamental muscle mechanical properties. Based on isokinetic torque measurements of the knee flexors and extensors (<sup>−1</sup><i>R</i><sup>2</sup> = 0.84 − 0.96
DOI: 10.6084/m9.figshare.19614589
title: Surface fit script from The hamstrings to quadriceps functional ratio expressed over the full angle-angular velocity range using a limited number of data points

description: This script fits the Re function to the raw ratio points obtained with the Raw_Ratio_Points fit. The current example demonstrates the fit on 17 raw ratio points
DOI: 10.6084/m9.figshare.19614583.v1
title: Raw ratio points calculator from The hamstrings: quadriceps functional ratio expressed over the full angle-angular velocity range using a limited number of data points

description: This script creates the raw ratio points used in the fit of the Re function for 11, 14, and 17-point fits. Use with the proxy dataset provided
DOI: 10.6084/m9.figshare.19614589.v2
title: Surface fit script from The hamstrings to quadriceps functional ratio expressed over the full angle-angular velocity range using a limited number of data points

description: This script fits the Re function to the raw ratio points obtained with the Raw_Ratio_Points fit. The current example demonstrates the fit on 17 raw ratio points
DOI: 10.6084/m9.figshare.19614580.v1
title: Proxy dataset from The hamstrings: quadriceps functional ratio expressed over the full angle-angular velocity range using a limited number of data points

description: This file contains a typical torque/angle/angular velocity proxy dataset from an isokinetic dynamometer from knee extension/flexion.
DOI: 10.6084/m9.figshare.19614586.v1
title: Supplementary material from The hamstrings: quadriceps functional ratio expressed over the full angle-angular velocity range using a limited number of data points

description: The hamstring-to-quadriceps (H:Q) strength ratio is widely used to identify individuals at risk of sustaining hamstring strain injuries. However, its efficacy is not supported by the current evidence. Current methods for the calculation of the H:Q ratio provide only a one- or two-dimensional ratio, often ignoring fundamental muscle mechanical properties. Based on isokinetic torque measurements of the knee flexors and extensors (<sup>−1</sup><i>R</i><sup>2</sup> = 0.84 − 0.96