cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.vv36g.1/4.1
title: Raw images - NEKO

description: Raw image (JPEG) files for photographs captured in NEKO Harbour (NEKO). There are 6 folders in total (images are separated by camera and year). Date, time, moon phase and temperature are shown within each image. Image names are in the following format: SITExYEARx_imagenumber.JPG. Please see the associated paper for more information.
DOI: 10.5061/dryad.vv36g.1/5.1
title: Raw images - PETE.1

description: Raw images (JPEG) files for photographs captured on Petermann Island (PETE). There are 2 folders in total (images are separated by year); additional PETE images can be found in 'PETE.2'. Date, time, moon phase and temperature are shown within each image. Image names are in the following format: SITExYEARx_imagenumber.JPG. Please see the associated paper for more information.
DOI: 10.17632/3x94g468fk.1
title: Data for: FAULT-FLUID INTERACTION IN PORPHYRY COPPER HYDROTHERMAL SYSTEMS: FAULTED VEINS IN RADOMIRO TOMIC, NORTHERN CHILE.

description: Raw patterns , Rietveld refinement parameters and quantitative results from X-ray diffraction of fault-related rocks in Radomiro Tomic porphyry copper deposit, Chile Extra set micro-photographies of the analysed rock samples.
DOI: 10.17632/hnkmfw92fm.1
title: Data for: Magneto- biostratigraphic age constraints on the palaeoenvironmental evolution of the South Caspian Basin during the Early-Middle Pleistocene (Kura Basin, Azerbaijan).

description: The data catalogues (Supplementary 1 and 2) include information about sampling points on different analyses, as well as an interpretation of biostratigraphic data. The Supplementary 3 - 8 include magnetostratigraphic data (th. - input files, dir. - interpreted directions, .pmag - statistic analysis) from both section that can be uploaded on the Paleomagnetism.org online platform.
DOI: 10.17632/hwt2mrpfbw.1
title: Data for: Calibration of the oxygen and clumped isotope thermometers for dolomite based on synthetic and natural carbonates

description: Individual replicates with ID, measurement date, conventional carbon and oxygen isotope composition plus clumped isotope composition of the published data.
DOI: 10.17632/pzk46y69ct.1
title: Data for: Epilepsy-related and other causes of mortality in people with epilepsy: a systematic review of systematic reviews

description: Raw SPSS data files analysed (pulled from published systematic reviews or published studies)
DOI: 10.17632/sxyv92wwx3.1
title: Data for: A coupled volume-of-fluid and level-set method (VOSET) for capturing interface of two-phase flows in arbitrary polygon grid

description: Correspondint to Appendix B of this article, the zipped file includes c++ source files for polygon calculations including: (1) Calculating the area of a convex polygon (2) Clipping a convex polygon with a line (3) Intersection between two convex polygons
DOI: 10.5061/dryad.46qf24q/1
title: Dryad data Philornis downsi effects on Darwin’s finch song Kleindorfer et al.
DOI: 10.5061/dryad.4nb12g2.2
title: Data from: Computational 3D histological phenotyping of whole zebrafish by X-ray histotomography
DOI: 10.5061/dryad.4nb12g2.2/1.2
title: ReadMe

description: General instructions and information concerning files included herein.
DOI: 10.5061/dryad.4nb12g2.2/2.2
title: 33 dpf microCT reconstruction of juvenile zebrafish

description: 33 dpf microCT reconstruction of juvenile zebrafish with nominal 1.43um voxel resolution. This is an 8-bit multi-page tiff series z-stack. We recommend opening with Fiji (Fiji Is Just ImageJ).
DOI: 10.5061/dryad.58qg7ct/5
title: revbayes.scripts

description: This .zip file contains example RevBayes scripts for each type of SSE analysis that we performed. Included is a readme file that describes individual files.
DOI: 10.5061/dryad.58qg7ct/6
title: revbayes.steppingstone.outputs

description: This .zip file contains all output files from RevBayes stepping stone analyses that calculate marginal likelihoods of competing models. Included is a readme file that describes individual files.
DOI: 10.5061/dryad.58qg7ct/7
title: sample.voucher.info

description: Voucher information for each sample in our study.
DOI: 10.5061/dryad.58qg7ct/8
title: treefiles

description: This .zip file contains tree files used in our analyses. Included is a readme file that describes individual files.
DOI: 10.5061/dryad.58qg7ct/9
title: various.Rscripts

description: This .zip file contains various R scripts used in our analyses. Included is a readme file that describes individual scripts.
DOI: 10.5061/dryad.62np6jd/1
title: STACKS VCF file output

description: The VCF file containing alll SNPs identified by STACKS. This file was filtered and further used to assess genetic structure across the Eurasian distribution of Primula farinosa
DOI: 10.5061/dryad.62np6jd/2
title: RAxML input alignment file

description: The Phylip file containing the filtered and aligned SNPs that were used to infer phylogenetic relationships across all sampled Primula farinosa individuals
DOI: 10.5061/dryad.6hm5760/1
title: Mycorrhizae alter milkweed constitutive and herbivore-induced volatile emissions

description: The file “AMFVolatiles.xslx” contains the raw data used in our publication “Mycorrhizae Alter Constitutive and Herbivore-Induced Volatile Emissions by Milkweeds”. Missing values are denoted with “NA”. Please see the README file for more detail about the data file.
DOI: 10.5061/dryad.6vm72sm/2
title: Supplemental Information

description: Supplemental text and Supplemental Figures.
DOI: 10.5061/dryad.6vm72sm/3
title: Supplemental Code 1

description: R code demonstrating the use of the flow algorithm for fitting dSSE models to large phylogenetic trees. This example fits a BiSSE model to a dated angiosperm tree and woodiness trait data.
DOI: 10.5061/dryad.7m67bg9/1
title: Ebinotata_SignalsPreferences_Temperature

description: Data included are individual IDs, frequency of male signals and peak frequency of female preferences, temperature during experimental trials, original population of treehopper, sex of individual (male or female), and the year the experiments were done. Data was collected from lab trials manipulating temperature using incubator and room temperature regulators.
DOI: 10.5061/dryad.8dr637p/1
title: sheep_data2_dryad

description: plink input files (bed, bim, fam) for data 2
DOI: 10.5061/dryad.8gj8kc3/1
title: Bennison et al tracking data for Atlantic puffins and razorbills

description: This tracking dataset was collected from the Saltee Islands over three years, razorbills tracked in 2014 and puffins tracked in 2017 and 2018. As well as GPS data, time depth recorder (TDR) data are also supplied for two puffin deployments. 2018 puffin tracking data contains dives appended to GPS information. Tracks and TDR data are supplied as with easy to read sensible headers CSVs.
DOI: 10.5061/dryad.8j3f4rh/4
title: README text file for data package
DOI: 10.5061/dryad.8mb0c27/2
title: Plant Phenotypic Data for Transplant Year 2

description: These data were collected in the field in year 2 of the transplant experiment (2016-2017). Variable definitions are in the readme file.
DOI: 10.5061/dryad.8mb0c27/3
title: Pollinator visitation data

description: Data from pollinator observations at the six transplant sites. Variable "Flowers" indicates the number of flowers observed during that 10 minute observation period. "Visits" indicates the total number of pollinator visits observed during that 10 minute observation period.
DOI: 10.5061/dryad.8mb0c27/4
title: Pollen Supplementation Data

description: Data from pollen supplementation experiment in year 2 of the transplant experiment, arranged as "wide" data with control and supplemented fruits from the same plant on the same row. Variable "Grid" indicates the planting grid ID. "Cell" is the planting cell ID. "c" indicates the number of seeds in the control fruit; "s" indicates the number of seeds in the supplemented fruit. "pollLimit" is the calculated pollen limitation metric.
DOI: 10.5061/dryad.8mb0c27/5
title: R Analyses

description: R Markdown file containing analyses used in the manuscript.
DOI: 10.5061/dryad.bq068jr/10
title: Nemertoderma_westbladi_SRX1343819

description: Assembled transcriptome of Nemertoderma westbladi from SRA SRX1343819 using Trinity (https://github.com/trinityrnaseq/trinityrnaseq/wiki).
DOI: 10.5061/dryad.bq068jr/11
title: Sterreria_sp_SRX1343821

description: Assembled transcriptome of Sterreria sp. from SRA SRX1343821 using Trinity (https://github.com/trinityrnaseq/trinityrnaseq/wiki).
DOI: 10.5061/dryad.bq068jr/12
title: Xenoturbella_bocki_SRX1343818

description: Assembled transcriptome of Xenoturbella bocki from SRA SRX1343818 using Trinity (https://github.com/trinityrnaseq/trinityrnaseq/wiki).
DOI: 10.5061/dryad.bq068jr/13
title: Xenoturbella_profunda_SRX1280426

description: Assembled transcriptome of Xenoturbella profunda from SRA SRX1280426 using Trinity (https://github.com/trinityrnaseq/trinityrnaseq/wiki).
DOI: 10.5061/dryad.bq068jr/8
title: Isodiametra_pulchra_SRX1343817

description: Assembled transcriptome of Isodiametra pulchra from SRA SRX1343817 using Trinity (https://github.com/trinityrnaseq/trinityrnaseq/wiki).
DOI: 10.5061/dryad.bq068jr/9
title: Meara_stichopi_SRX1343814

description: Assembled transcriptome of Meara stichopi from SRA SRX1343814 using Trinity (https://github.com/trinityrnaseq/trinityrnaseq/wiki).
DOI: 10.5061/dryad.cs0sj00/9
title: Hydrogen activity from pure water splitting data for different photocatalyst in Figure 7
DOI: 10.5061/dryad.n5qb383/1
title: Water levels at Scripps Pier

description: Hourly observed and six-minute predicted water levels at the end of Scripps Pier, Station 9410230 in La Jolla, California, USA, are extracted from the National Oceanic and Atmospheric Administration's (NOAA's) Center for Operational Oceanographic Products and Services (CO-OPS) database. During the extracted record, an acoustic sensor was used until 2014 (Aquatrak air acoustic sensor), when it was fully replaced by a microwave radar water level sensor (Xylem WaterLOG H-3611i, first installed in 2013). A pressure sensor (GE Druck PDCR 4010) was used as a backup to fill in data gaps. All water level sensors were leveled and data quality controlled. Predictions are generated from harmonic constituents of the record dating back to 1924. The sensors at the end of the Scripps pier are less than 40km away from all beach monitoring sites and measure the water level above a water column that is approximately 6m deep. Regional, non-tidal effects (e.g. El Niño) are included in the observed water levels and will be similar between sites and the gauge. However, local effects may vary between the monitoring sites and the gauge observations, particularly eddy activity and wave set down (or some wave setup, if waves are large). Note that when creating shoreline water level estimates, the user must account for wave setup and runup that is not observed in deeper water at the gauge. The tidal-only information provided by the predictions may also vary slightly from the monitoring sites and can be estimated using tidal models (e.g. TPXO, ADCIRC).
DOI: 10.5061/dryad.n5qb383/21
title: README

description: Overview README file for the entire repository
DOI: 10.5061/dryad.n6n6495/1
title: Fitzpatrick et al data
DOI: 10.5061/dryad.pr996gj/1
title: melanogaster_data dryad
DOI: 10.5061/dryad.pr996gj/2
title: wabassoPCs
DOI: 10.5061/dryad.q30s950/1
title: JEXBIO2019199232_Data
DOI: 10.5061/dryad.qd1661s/1
title: Wise_DH_Lensing_JR_2019

description: Please refer to the README file for a full description of the variables contained in the data file
DOI: 10.5061/dryad.qf36gd4/1
title: Main R code: statistical analysis and figures

description: R code to recreate all figures and analysis included in the Evolution paper. This file takes as inputs freq1.tsv, freq2.tsv, and SingleStrain_phenotype_summary.tsv.
DOI: 10.5061/dryad.qf36gd4/2
title: Strain frequencies from first sequencing run

description: Strain frequencies of 101 rhizobial strains in pools of Medicago nodules inferred from high coverage WGS data. Raw data used to calculate strain frequencies are on NCBI (Accessions SRR6029825–SRR6029912) with code in a previous Dryad repository ( https://doi.org/10.5061/dryad.fp1bg).
DOI: 10.5061/dryad.qf36gd4/3
title: Strain frequencies from second sequencing run

description: Strain frequencies of 101 rhizobial strains from pools of Medicago nodules inferred from high coverage WGS data. Raw data used to calculate strain frequencies are on NCBI (Accessions SRR6029825–SRR6029912) with code in a previous Dryad repository (https://doi.org/10.5061/dryad.fp1bg).
DOI: 10.5061/dryad.qf36gd4/4
title: Plant phenotypes from single strain experiment

description: Plant phenotype data from a previously published single strain experiment (Burghardt et al, 2018, PNAS, https://doi.org/10.1073/pnas.1714246115). This file is also found in the Dryad repository for that publication ( https://doi.org/10.5061/dryad.fp1bg). The file is used as input for calculations of plant benefit of strain communities in the main R code.
DOI: 10.5061/dryad.ss5gp34/1
title: Total biomasss and trait values of the low- and high-salinity populations（invasive/native & vine/herb)  in response to single/combined stresses
DOI: 10.5061/dryad.vv36g.1/10.1
title: Raw images - DAMO-MAIV

description: Raw images (JPEG) files from cameras at Damoy Point, George's Point, Half Moon Island, Port Lockroy and Maiviken - DAMO (1), GEOR (1), HALF (2), LOCK (1) and MAIV (4), respectively. Numbers in parentheses denote the number of separate folders associated with each camera location. Each image shows the date, time, moon phase and temperature alongside the photograph. Individual images are named in the following format: SITExYEARx_imagenumber.JPG. For more information please refer to the associated paper.
DOI: 10.5061/dryad.vv36g.1/6.1
title: Raw images - PETE.2

description: Raw image (JPEG) files for photographs captured on Petermann Island (PETE). There are 3 folders in total (images are separated by camera and year); additional PETE images can be found in 'PETE.1'. Date, time, moon phase and temperature are shown within each image. Image names are in the following format: SITExYEARx_imagenumber.JPG. Please see the associated paper for more information.
DOI: 10.5061/dryad.vv36g.1/7.1
title: Raw images - SPIG

description: Raw image (JPEG) files for photographs captured on Spigot Peak (SPIG). There are 3 folders in total (images are separated by year). Date, time, moon phase and temperature are shown within each image. Image names are in the following format: SITExYEARx_imagenumber.JPG. Please see the associated paper for more information.
DOI: 10.5061/dryad.vv36g.1/8.1
title: PW Anonymised Raw Classifications and Metadata

description: This folder contains 34 csv files, each providing the metadata (including - but not limited to - 'user_name' (anonymised), 'subject_zooniverse_id', 'temperature_f', 'timestamp', and raw 'x' and 'y' coordinates for volunteer clicks) associated with each of the 73,802 Penguin Watch subjects (photographs) provided in this repository. Please see the associated paper for further information and an explanation of terms. The metadata are divided by camera/year, although some are subdivided for clarity and consistency with the 'PW Consensus Click Data' files. For information on how to filter the raw coordinates prior to performing a cluster analysis, please see the 'Clustering Algorithm' section of the accompanying 'Data Descriptor'. Please note that any missing information is absent because it could not be obtained from the cameras, or was missing from the Penguin Watch database - all available metadata have been uploaded to the repository.
DOI: 10.5061/dryad.vv36g.1/9.1
title: PW Consensus Click Data

description: This folder comprises 34 csv files, each containing 'consensus click' data relating to the 73,802 Penguin Watch subjects (photographs) also published in this repository. These data are produced via a clustering algorithm (see the 'Methods' section of the associated paper for more information), the code for which can be found on GitHub at the following address: https://github.com/zooniverse/aggregation/blob/master/penguins/aggregate.py (a static version is also archived on Figshare at: https://doi.org/10.6084/m9.figshare.5472544.v1). Please also see the associated paper for an explanation of terms. Please note that the data for some cameras have been subdivided into multiple files - this is to increase clarity, and for consistency with respect to the 'Anonymised Raw Classifications and Metadata' files.
DOI: 10.17632/4s6zhzvpbm.1
title: Data for: Bending Characteristicsbie Analysis and Lightweight Design of a Bionic Beam Inspired by Bamboo Structures
DOI: 10.17632/5xbvgj6rg5.1
title: Data for: Extreme hydroclimate gradients within the western Cape Floristic region of South Africa since the Last Glacial Maximum

description: Stable nitrogen isotope data (d15N) from rock hyrax middens from Pakhuis Pass (19.0651E, 32.0924S)
DOI: 10.17632/72fnxspz6c.1
title: Data for: Evaluation on the mechanic behavior of an intact completely decomposed granite soil under cyclic loading-unloading path

description: experimental results
DOI: 10.17632/ngjtc2hzk9.1
title: Data for: Chronology with a pinch of salt: integrated stratigraphy of Messinian evaporites in the deep Eastern Mediterranean reveals long lasting halite deposition during Atlantic connectivity

description: Data used for plotting of figures in manuscript
DOI: 10.17632/ptx43r8z3x.1
title: Data for: Identification and Characterization of the First Fragment Hits for SETDB1 Tudor Domain

description: Supporting information containing Spectroscopic and chromatography data
DOI: 10.17632/sj4pk75bxc.1
title: Data for: Erythraline pharmacokinetic study: correlation between kinetic parameters, metabolites and clinical use

description: Pharmacokinetics Erythralin
DOI: 10.5061/dryad.18t83t0/1
title: Data

description: This is a comprehensive dataset of extreme hydrological events (EHEs) – floods and droughts, consisting of 2,171 occurrences worldwide, during 1960-2014, and their economic losses normalized using a price index in U.S. dollar.
DOI: 10.5061/dryad.360k8v0/1
title: Diversity, biomass, and size structure
DOI: 10.5061/dryad.360k8v0/2
title: Zooplankton composition
DOI: 10.5061/dryad.360k8v0/3
title: Phytoplankton composition
DOI: 10.5061/dryad.4nb12g2.2/10.2
title: Nuclear detection probabilities 5 dpf (samples 1-5)

description: Nuclear detection probabilities of each 5 dpf sample analyzed provided as individual 32-bit multi-page tiff z-stacks. We recommend opening in Fiji (Fiji Is Just ImageJ).
DOI: 10.5061/dryad.4nb12g2.2/11.2
title: 5 dpf (samples 1-5) anatomical brain region segmentations

description: Segmentations of anatomical brain regions in the same space as nuclear detections are provided herein.
DOI: 10.5061/dryad.4nb12g2.2/3.2
title: 5 dpf (samples 1-5) microCT reconstructions of larval zebrafish

description: 5, 5 dpf microCT reconstructions of larvalzebrafish with nominal .743um voxel resolution. These are 8-bit multi-page tiff series z-stacks. We recommend opening with Fiji (Fiji Is Just ImageJ) using the bio-formats plugin.
DOI: 10.5061/dryad.4nb12g2.2/4.2
title: Zebrafish Brain Segmentation and Nuclear Detection (Virtual Reality)

description: Virtual Reality project of our cell detection pipeline, viewable for free in the scientific VR platform syGlass View available here: https://www.syglass.io/view
DOI: 10.5061/dryad.4nb12g2.2/5.2
title: Zebrafish Embryonic to Juvenile Development (Virtual Reality)

description: Virtual Reality project of a 2, 3, 4, 5 and 33 dpf zebrafish reconstructed with microCT, viewable for free in the scientific VR platform syGlass View available here: https://www.syglass.io/view
DOI: 10.5061/dryad.4nb12g2.2/6.2
title: Zebrafish Juvenile 1.43um voxel size (Virtual Reality)

description: Virtual Reality project of a 33 dpf juvenile zebrafish reconstructed with microCT, viewable for free in the scientific VR platform syGlass View available here: https://www.syglass.io/view
DOI: 10.5061/dryad.4nb12g2.2/7.2
title: Registration Pipeline

description: Files are provided for registering our manually segmented 5-dpf fish onto our other samples. Uses elastix/transformix, which can be found here: http://elastix.isi.uu.nl/
DOI: 10.5061/dryad.4nb12g2.2/8.2
title: Nuclear Detection Validation

description: Validation of our nuclear detection pipeline is provided, scripts and user segmentations are provided herein.
DOI: 10.5061/dryad.4nb12g2.2/9.2
title: Nuclei positioning and characteristics

description: Nuclei position and morphological characteristics provided by simpleITK analysis are provided herein as .csv files.
DOI: 10.5061/dryad.64d2h47/1
title: Code for dispersal individual-based model

description: The zipped folder contains the climate suitability maps and all R code to run the hybrid individual-based model for the article published in Diversity and Distributions "Geographic variation in dispersal and dispersal distance facilitate range expansion of a lakeshore plant in response to climate change".
DOI: 10.5061/dryad.6b604g8/1
title: DataFig 1

description: data files for Fig 1
DOI: 10.5061/dryad.777461k/1
title: Tropical tree response data_elevated CO2 and phosphorus

description: Physiological responses data of 8 tropical tree seedlings to various CO2 and soil phosphorus treatments.
DOI: 10.5061/dryad.b9m3402/1
title: Individual inaccuracies of long- and short-styled individuals in forest and grassland population
DOI: 10.5061/dryad.b9m3402/2
title: Pollen deposition on stigmas of long- and short-styled indviduals of the distylous herb Primula veris in forest and grassland population
DOI: 10.5061/dryad.c30d3c3/1
title: Eaton_Data
DOI: 10.5061/dryad.d7d7b2t/1
title: % Closed Forest 16km-radius Window

description: Using Hansen et al.’s (2013) original percent forest cover layer (http://earthenginepartners.appspot.com/science-2013-global-forest/download_v1.2.html), we reclassified &gt;40% forest cover as ‘closed forest’. We then used FRAGSTATS (McGarigal, Cushman, Neel, & Ene, 2012) to calculate the percentage of the landscape occupied by closed forest habitat within a 16km-radius moving window. The data is in raster .tif format for use in GIS. We resampled the source data from its native 30m resolution to 250m resolution. Coordinate system: Asia South Albers Equal Area Conic.
DOI: 10.5061/dryad.d7d7b2t/2
title: Shrubland/Grassland Correlation Length 16km-radius Window

description: Original data for this GIS raster layer was obtained from the ESA CCI Land Cover Layer 300m 2015 (www.esa-landcover-cci.org). We first reclassified the original data layer, denoting shrubland/grassland as present (1) or absent (0). We then used FRAGSTATS (McGarigal, Cushman, Neel, & Ene, 2012) to calculate the correlation length or area-weighted mean of gyration within a 16km-radius moving window. Correlation length measures the average distance an individual can travel within a habitat patch, or in this case the average extensiveness of shrubland/grassland habitat within a 16km-radius window. We re-sampled the source data from its native 300m resolution to 250m. Units are in meters. Coordinate system: Asia South Albers Equal Area Conic.
DOI: 10.5061/dryad.d7d7b2t/3
title: Compound Topographic Index Focal Mean 500m-radius Window

description: This GIS raster was derived from Jarvis, Reuter, Nelson, & Guevara's (2008) digital elevation model (http://srtm.csi.cgiar.org) using the Geomorphometry & Gradient Metrics Toolbox (Evans, Oakleaf, Cushman, & Theobald, 2014) in ArcGIS 10.2.2 (ESRI, Redlands, CA, USA, 2011). Compound topographic index (CTI) characterizes flow accumulation. Low elevation drainages incur high CTI, whereas mountaintops and ridgelines exhibit low CTI. We then used neighborhood statistics in ArcGIS to calculate the focal mean within a 500m-radius moving window. We re-sampled the native 90m resolution DEM to 250m. Coordinate system: Asia South Albers Equal Area Conic.