cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7821773
title: Accompanying data - Papyrus - A large scale curated dataset aimed at bioactivity predictions

description: <strong>Fixed version of Papyrus++ 05.5:<br> - In the previous 05.5 version </strong>data was incorrectly duplicated based on assay type. This resulted in unintended data augmentation.<br> <strong>- In this fixed 05.5 version</strong> the duplicates have been eliminated, now reporting the correct amount of data per assay type. This repository contains the version 05.5 of the Papyrus dataset, an aggregated dataset of small molecule bioactivities, as described in the article "Papyrus - A large scale curated dataset aimed at bioactivity predictions" http://doi.org/10.1186/s13321-022-00672-x. With the ongoing rapid growth of publicly available ligand-protein bioactivity data, there is a trove of valuable data that can be used to train a plethora of machine learning algorithms. However, not all data is equal in terms of size and quality and a significant portion of researchers’ time is needed to adapt the data to their needs. On top of that, finding the right data for a research question can often be a challenge on its own. To meet these challenges we have constructed the Papyrus dataset. Papyrus is comprised of around 60 million datapoints. This dataset contains multiple large publicly available datasets such as ChEMBL and ExCAPE-DB combined with several smaller datasets containing high-quality data. The aggregated data has been standardised and normalised in a manner that is suitable for machine learning. We show how data can be filtered in a variety of ways and also perform some example quantitative structure-activity relationship analyses and proteochemometric modelling. Our ambition is that this pruned data collection constitutes a benchmark set that can be used for constructing predictive models, while also providing a solid baseline for related research.
DOI: 10.18167/dvn1/qnx5hu
title: High resolution map of plant available water content for Burkina Faso, derived from iSDA Africa 30m soil properties maps using USDA Rosetta3 model

description: Purpose: The purpose of this dataset is to provide a high resolution map of available water content for Burkina Faso derived from 30m soil properties maps using the iSDA Africa dataset and the USDA Rosetta3 model. The map can be used to notably support spatialized crop simulation models to determine potential crop yields across West Africa. Nature and extent of data: The dataset consists of a high resolution map of plant available water content derived from four soil property datasets from iSDA Africa. The soil properties include sand, clay, silt and fine-earth bulk density, and were predicted at a 30m resolution for 0-20 cm and 20-50cm depth intervals. The USDA Rosetta model was used to compute soil water retention properties from four iSDA layers (sand, clay, silt content, and fine-earth bulk density), including the van Genuchten parameters of residual water content, saturated water content, 'alpha' shape parameter, 'n' shape parameter, and saturated hydraulic conductivity. From these parameters, the volumetric water content at field capacity and permanent wilting point was computed using the van Genuchten-Mualem model. The output map has been filled with nearest neighbor interpolation where NaN values were present. Finally, available water content integrated over the soil profile down to 50cm and to the bedrock depth was calculated. Location and coverage: The dataset covers the country of Burkina Faso in West Africa at a 30m resolution. Temporal scope: The dataset was created using soil property data and models from iSDA Africa and USDA Rosetta3, respectively, and covers the temporal scope of the original datasets. Archive formats / unzipping: Some of the archive files are separated in multiple parts, as indicated by their numeral file extensions (i.e. *.001, *.002, etc). To unzip these files, please consider using an unzipping software such as 7zip, that will manage file concatenation and unzipping given that all parts are stored under the same folder in your file system.
DOI: 10.15468/dl.h7am3p
title: Occurrence Download

description: A dataset containing 524 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taxillus kaempferi (DC.) Danser"
 ]
}

 The dataset includes 524 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120637-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7d9ey6
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erysimum cheiranthoides L.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120638-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j5tz28
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tapeinidium acuminatum K.U.Kramer"
 ]
}

 The dataset includes 30 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120639-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b6uqxr
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tetragonia hirsuta L.fil."
 ]
}

 The dataset includes 104 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120641-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v39srz
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taraxacum aperavtum Soest"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120643-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6n7wuk
title: Occurrence Download

description: A dataset containing 2818 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calopteryx japonica Selys, 1869"
 ]
}

 The dataset includes 2818 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120640-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6yk4r5
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taraxacum opaciforme Dahlst. ex G.E.Haglund"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120642-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nw6kcn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erysimum cuspidatum (M.Bieb.) DC.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120645-240321170329656/datasets/export for details.
DOI: 10.6084/m9.figshare.25563267
title: Genome annotation of L. apetalum

description: Genome annotation of L. apetalum
DOI: 10.6084/m9.figshare.25563267.v1
title: Genome annotation of L. apetalum

description: Genome annotation of L. apetalum
DOI: 10.15468/dl.hp6rps
title: Occurrence Download

description: A dataset containing 194 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taxillus levinei (Merr.) H.S.Kiu"
 ]
}

 The dataset includes 194 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120644-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yzkeyr
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gambusia affinis (Baird & Girard, 1853)"
 ]
}

 The dataset includes 93 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120646-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ehwmv9
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tapeinidium atratum K.U.Kramer"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120647-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kbcs43
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tetragonia lasiantha Adamson"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120648-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.682ndq
title: Occurrence Download

description: A dataset containing 219 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taraxacum opacum (Dahlst.) Dahlst."
 ]
}

 The dataset includes 219 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120650-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.624qkt
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taraxacum aphanochroum Hagend., Soest & Zevenb."
 ]
}

 The dataset includes 145 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120649-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wep223
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erysimum diffusum Ehrh.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120651-240321170329656/datasets/export for details.
DOI: 10.18167/dvn1/cfbiyd
title: Valorcarn-TETIS: Fusion of terms extracted with Biotex and Fastr

description: Text-Mining: Fusion of terms extracted with Biotex and Fastr from "Valorcarn Corpus" (http://dx.doi.org/10.18167/DVN1/7YTQGQ). -- Valorcarn Project (2015-2017) [project supported by GloFoodS program (INRA-Cirad)]. Topic: Mining of scientific documents for identification of process that enables to reduce losses and waste.
DOI: 10.17031/65fd9346d9991
title: 2010 The Marine Biological Association of the UK (MBA) Mothecombe Bioblitz Survey

description: Bioblitz survey taking place at Mothecombe, Devon. Organised and run by the Marine Biological Association (MBA) in Plymouth, annual Bioblitz surveys take place in/around Plymouth (sites in Devon and Cornwall). These surveys aim to record as many species as possible as being present within a set survey area over 24-hours. A variety of different methods were employed, including times-species searches, plankton netting, Seine-netting, Pond-dipping with nets, mammal trapping, walkovers, push-netting, grab/core, transect/quadrat, and including Dive and snorkel surveys, although most records were ad-hoc sightings made during the 24 hour survey.
DOI: 10.15468/dl.eaehbw
title: Occurrence Download

description: A dataset containing 239 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taxillus limprichtii (Grüning) H.S.Kiu"
 ]
}

 The dataset includes 239 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120652-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tesmvh
title: Occurrence Download

description: A dataset containing 167 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tapeinidium biserratum (Blume) Alderw."
 ]
}

 The dataset includes 167 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120653-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4pag4r
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tetragonia macroptera Pax"
 ]
}

 The dataset includes 41 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120654-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sncmfe
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taraxacum opeatolobum T.A.Lange"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120655-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7fmeeq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erysimum grandiflorum Nutt. ex Torr. & A.Gray, 1838",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120656-240321170329656/datasets/export for details.
DOI: 10.15468/dl.wjby45
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taraxacum aphrogenes Meikle"
 ]
}

 The dataset includes 23 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120657-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18167/dvn1/lpbhwp
title: Valorcarn-TETIS: Variations of terms extracted with Fastr (driven extraction)

description: Text mining: Extraction of variations of term extraction. Input: (1) list of terms, (2) corpus ("Valorcarn Corpus" - http://dx.doi.org/10.18167/DVN1/7YTQGQ) For instance, with "biltong samples", we obtain "biltong spice sample", "samples to produce biltong", etc. -- Valorcarn Project (2015-2017) [project supported by GloFoodS program (INRA-Cirad)]. Topic: Mining of scientific documents for identification of process that enables to reduce losses and waste
DOI: 10.15468/dl.u9rnrh
title: Occurrence Download

description: A dataset containing 258 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taxillus liquidambaricola (Hayata) Hosok."
 ]
}

 The dataset includes 258 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120658-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hy9v39
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tetragonia microptera Fenzl ex Harv. & Sond."
 ]
}

 The dataset includes 30 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120661-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9wf4sg
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taraxacum opertum H.Øllg."
 ]
}

 The dataset includes 75 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120659-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eenmg6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erysimum kotschyanum J.Gay",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120663-240321170329656/datasets/export for details.
DOI: 10.15468/dl.e45gzq
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tapeinidium buniifolium K.U.Kramer"
 ]
}

 The dataset includes 11 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120660-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b64wgu
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is Swiss National Reptile Databank"
 ]
}

 The dataset includes 153 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120662-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ytbkax
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Channa argus (Cantor, 1842)"
 ]
}

 The dataset includes 90 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120664-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hey3rp
title: Occurrence Download

description: A dataset containing 328 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taraxacum apicatum Brenner"
 ]
}

 The dataset includes 328 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120665-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qfhsfn
title: Occurrence Download

description: A dataset containing 758 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taxillus nigrans (Hance) Danser"
 ]
}

 The dataset includes 758 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120666-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25560237
title: Raw Imaging Dataset - 20221206_CrSBr_cryo_200nm

description: Contains all near-field imaging scans used in the publication
DOI: 10.6084/m9.figshare.25560237.v2
title: Raw Imaging Dataset - 20221206_CrSBr_cryo_200nm

description: Contains all near-field imaging scans used in the publication
DOI: 10.15468/dl.8sbjvq
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tetragonia namaquensis Schltr."
 ]
}

 The dataset includes 36 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120667-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93bgqq
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taraxacum oplilobum Soest"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120668-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cd6j5h
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erysimum kuemmerlei Jáv.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120669-240321170329656/datasets/export for details.
DOI: 10.6084/m9.figshare.25560240
title: Raw Imaging Dataset - 20220928_CrSBr_cryo_100K

description: Contains all near-field imaging scans used in the publication
DOI: 10.6084/m9.figshare.25560240.v1
title: Raw Imaging Dataset - 20220804 CrSBr neaspec - 2022-04-19 4646 - 2022-04-19 173337 S PH CrSBr flake6~130nm LT w=800nm 0deg rotation Data

description: Near-field imaging scan
DOI: 10.6084/m9.figshare.25560240.v2
title: Raw Imaging Dataset - 20220928_CrSBr_cryo_100K

description: Contains all near-field imaging scans used in the publication
DOI: 10.15468/dl.2w8e6q
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tapeinidium calomelanos K.U.Kramer"
 ]
}

 The dataset includes 30 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120670-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.