cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.dq28j/7
title: Aliatypus_H1H2_Sushi_dryad

description: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1, putative, alignment file, nexus format
DOI: 10.5061/dryad.dq28j/8
title: Aliatypus_H9H10_ribosome_dryad

description: ribosome biogenesis protein, putative, alignment file, nexus format
DOI: 10.5061/dryad.gr0sb/1
title: supplementary data

description: This zipped directory contains NEXUS files and tree files from which nucleotide diagnoses were computed, and morphometric data and R script for PCA and LDA analyses.
DOI: 10.5061/dryad.hb149/2
title: Image data of figure3A

description: Asymmetry maps of the patient with left ICA occlusion accompanied by old cerebral infarction in the left medial frontal lobe (Case 2 in Table 1); Image format is NIfTI.　These images were overlayed on the template MRI.
DOI: 10.5061/dryad.hb149/3
title: Image data of figure3B

description: Asymmetry maps of the patient with near-occlusion of the left ICA (Case 5 in Table 1); Image format is NIfTI. These images were overlayed on the template MRI.
DOI: 10.5061/dryad.hb149/4
title: PET and SPECT images

description: PET and SPECT image data (NIfTI) of all the cases; early-SPECT: SPECT count image in the early phase scan, IMZ-K1: IMZ K1 parametric image (voxel value is 10000 times K1(ml/min)), PET-CBF: CBF parametric image (voxel value is 100 times CBF(ml/100ml/min), PET-CMRO2: CMRO2 parametric image (voxel value is 1000 times CMRO2(ml/100ml/min)), PET-OEF: OEF parametric image (voxel value is 100 times OEF(%).
DOI: 10.5061/dryad.jv77v/10
title: README

description: README file for the data
DOI: 10.5061/dryad.jv77v/11
title: Database_MAFFT_incl_outlier_20170725

description: The database of Myxomycete sequences described in the paper.
DOI: 10.5061/dryad.jv77v/9
title: S6_Scripts_Resubmission

description: Supplementary S6 from the manuscript. Contains scripts and commandlines necessary for reproducing the conclusions of the manuscript
DOI: 10.5061/dryad.kd1d4/14
title: CHELSA_temp10_2_land
DOI: 10.5061/dryad.kd1d4/15
title: CHELSA_temp10_3_land
DOI: 10.5061/dryad.kd1d4/16
title: CHELSA_temp10_4_land
DOI: 10.5061/dryad.kd1d4/17
title: CHELSA_temp10_5_land
DOI: 10.5061/dryad.kd1d4/18
title: CHELSA_temp10_6_land
DOI: 10.5061/dryad.kd1d4/19
title: CHELSA_temp10_7_land
DOI: 10.5061/dryad.kd1d4/9
title: CHELSA_prec_9_land
DOI: 10.5061/dryad.mc460/1
title: PLANT_ISOTOPES

description: Isotopic signal (13C and 15N) of plant responses to precipitation across the INCREASE experimental network (Data in Box 1A from Andresen et al., 2018).
DOI: 10.5061/dryad.mc460/3
title: 14C_RESPIRATION

description: Values of the 14C signature (natural abundance) of CO2 in soil efflux samples, collected at the Peaknaze site (UK) (Data in Box 2B from Andresen et al., 2018).
DOI: 10.5061/dryad.mc460/4
title: 13CPLFA_DK

description: Results of a 13C-CO2 pulse experiment conducted at the Brandbjerg site (Denmark). Values of recovery of 13C (% from added 13C) in PLFA of soil Gram-negative bacteria, at different times since 13C pulse (Data in Box 3C from Andresen et al., 2018).
DOI: 10.5061/dryad.mc460/5
title: 14C_kinetics

description: Results of an experiment on microbial mineralisation of carbon compounds, using low-molecular weight carbon substrates labelled with 14C. Values in this file show the exponential decay kinetics for 14C-CO2 evolution during microbial 14C substrate mineralisation (Data in Box 4A from Andresen et al., 2018).
DOI: 10.5061/dryad.mc460/6
title: 14C_halflife

description: Results of an experiment on microbial mineralisation of carbon compounds, using low-molecular weight carbon substrates labelled with 14C. Values correspond to half-life of added 14C-sugars in the soil solution of samples collected across the INCREASE network. Mean annual temperature of each site indicated (Data in Box 4B from Andresen et al., 2018).
DOI: 10.5061/dryad.p8440/1
title: 2v9Nospatial

description: Simulation without spatial expansion-collision dynamics were ran with cells randomly shuffling among sites on the lattice every generation. Simulation were initiated with 2v9 dilution with initial cell-cell distance equals 3.
DOI: 10.5061/dryad.p8440/10
title: 2v7_nobenefit

description: Simulations were ran with expansion-collision dynamics where initial cell-cell distance equals 1 and benefit equals 0.
DOI: 10.5061/dryad.p8440/2
title: 2v8Nospatial

description: Simulation were run with cells randomly shuffling among sites on the lattice every generation. Simulation were initiated with 2v8 dilution with initial cell-cell distance equals 2. Note: Sheet 1 is a part of data for these simulations, Sheet 2 has entire date for this treatment and sheet 3 was used to generate the heatmap.
DOI: 10.5061/dryad.p8440/3
title: 2v7Nospatial

description: Simulation without expansion-collision dynamics were run with cells randomly shuffling among sites on the lattice every generation. Simulation were initiated with 2v7 dilution with initial cell-cell distance equals 1.
DOI: 10.5061/dryad.p8440/4
title: 2v4.9068Nospatial

description: Simulations without expansion-collision dynamics were ran with cells randomly shuffling among sites on the lattice every generation. Simulation were started with 0 initial cell-cell distance with a dilution of 2V4.9068.
DOI: 10.5061/dryad.p8440/5
title: 2v9_rareinvasion

description: Rare invasion simulations were ran with expansion-collision dynamics with initial cell-cell distance equals 3. Sheet 2 is the result for a single cooperator that invades a defector population. Sheet 3 is the result for a single defector that invades a defector population. Lines in Fig 6C (red for cooperator and green for defector) were drawn where the invasion probability first equals or exceeds 0.6, representing the boundary between invasion and non-invasion (a probability of 0.5 corresponds with selective neutrality) based on the yellow colored cells in the spreadsheet.
DOI: 10.5061/dryad.p8440/6
title: 2v8_rareinvasion

description: Rare invasion simulations were ran with expansion-collision dynamics with initial cell-cell distance equals 2. Sheet 2 is the result for a single cooperator that invades a defector population. Sheet 4 and sheet 5 are the result for a single defector that invades a defector population. Lines in Fig 6B (red for cooperator and green for defector) were drawn where the invasion probability first equals or exceeds 0.6, representing the boundary between invasion and non-invasion (a probability of 0.5 corresponds with selective neutrality) based on the yellow colored cells in the spreadsheet.
DOI: 10.5061/dryad.p8440/7
title: 2v7_rareinvasion

description: Rare invasion simulations were ran with expansion-collision dynamics with initial cell-cell distance equals 1. Sheet 2 is the result for a single cooperator that invades a defector population. Sheet 3 is the result for a single defector that invades a defector population. Lines in Fig. 6A (red for cooperator and green for defector) were drawn where the invasion probability first equals or exceeds 0.6, representing the boundary between invasion and non-invasion (a probability of 0.5 corresponds with selective neutrality) based on the yellow colored cells in the spreadsheet.
DOI: 10.5061/dryad.p8440/8
title: 2v9_nobenefit

description: Simulations were ran with expansion-collision dynamics where initial cell-cell distance equals 3 and benefit equals 0.
DOI: 10.5061/dryad.qc7n5/3
title: PNG_AlphaScreen_data

description: AlphaScreen measurements of antibody response in longitudinal cohort from Papua New Guinea.
DOI: 10.5061/dryad.qc7n5/4
title: Pv_Protein_Information

description: Description of P. vivax proteins.
DOI: 10.5061/dryad.qc7n5/5
title: Three_site_parameters

description: Estimated parameters for the antibody dynamics in Thailand, Brazil and Papua New Guinea.
DOI: 10.5061/dryad.rd912/6
title: LTDS - Larrea plots, Removal records, data archive

description: see publication
DOI: 10.5061/dryad.rd912/7
title: LTDS Larrea size data archive

description: see publication
DOI: 10.5061/dryad.rd912/8
title: LTDS Rainfall data archive

description: see publication
DOI: 10.17632/8p2sh847m7.2
title: Data for: Pharmacokinetic Studies of a Three-Component Complex that Repurposes the Front Line Antibiotic Isoniazid against Mycobacterium tuberculosis

description: Data report providing experimental details
DOI: 10.17632/w2n7r5m7vs.1
title: Data for: Environmental and spatial assessment for the ecodesign of a cladding system with embedded Phase Change Materials
DOI: 10.17632/w2n7r5m7vs.2
title: Data for: Environmental and spatial assessment for the ecodesign of a cladding system with embedded Phase Change Materials
DOI: 10.5061/dryad.2pb43/1
title: Interlandmark distances for 15 hominoid species

description: Logged data for 39 traits utilized in Schroeder and von Cramon-Taubadel (2017)
DOI: 10.5061/dryad.36sv8/1
title: Batrox6_Part1.txt

description: Partial raw fastq data file (Part 1 of 3).  Concatenate with Parts 2 and 3 prior to analysis.
DOI: 10.5061/dryad.420k8/1
title: Zagl1_data

description: Excel file containing genotype, phenotype and genetic stock data.
DOI: 10.5061/dryad.51hj7/1
title: Inter-group variability on Seed Dispersal by White-Handed Gibbons in Mosaic Forest

description: One file contains 7 sheet: 1) location of two groups, 2) movement data of two groups, 3) Home range and Daily path length, 4) seed dispersal distance, 5) tortuosity values of two groups. A second file is the output from the modeled seed dispersal curves.
DOI: 10.5061/dryad.5jn7b/1
title: Smith_and_Kriebel_2018

description: This package includes the files needed to reproduce the morphometric and comparative analyses in the following paper:
Smith, S.D., and R. Kriebel. 2018. Convergent evolution of floral shape tied to pollinator shifts in Iochrominae (Solanaceae). Evolution.
DOI: 10.5061/dryad.61668/1
title: Full Data Extracted- STT

description: This file colligates all data and parameters extracted from the analysis of the experimental movies after segmentation.
DOI: 10.5061/dryad.6hm4p/1
title: ETS.fasta

description: ETS alignment for the Orobanchaceae analysis.
DOI: 10.5061/dryad.6hm4p/2
title: ITS.fasta

description: ITS alignment for the Orobanchaceae analysis.
DOI: 10.5061/dryad.6hm4p/3
title: PhyA.fasta

description: Phytochrome A alignment for the Orobanchaceae analysis.
DOI: 10.5061/dryad.6hm4p/5
title: Orobanchaceae_concatenated.fasta

description: Concatenated sequence alignment of ETS, ITS, Phytochrome A, and Phytochrome B, used for the Orobanchaceae analysis.
DOI: 10.5061/dryad.73kb7/1
title: SMR, AMR & Swimming Speeds

description: Individual phenotypes and pedigree information.  Full data description can be found in the README.txt
DOI: 10.5061/dryad.7j2c1/1
title: Data obtained from field experiment
DOI: 10.5061/dryad.7j2c1/2
title: Data obtained from greenhouse experiment
DOI: 10.5061/dryad.8nj84/1
title: Pollen Depletion

description: To compare the rates of pollen depletion among C. virginica populations, we assessed the amount of pollen available in individual flowers (an estimate of the pollen standing crop) during the period of insect activity, from mid-morning until early or late afternoon. Each hour, we arbitrarily chose eight flowers scattered throughout the local plant population and collected the anthers from each flower into a microcentrifuge tube containing 1 mL of 70% ethanol. We chose flowers regardless of the number of dehisced anthers. We began anther collection each morning when the flowers’ anthers began to dehisce, usually between 8:45 and 10:00, but occasionally as late as 13:15 because of cool or wet weather. We concluded anther collection when insect visitation ceased or flowers began to close, between 13:00 and 15:00. 
We counted the number of pollen grains available in each flower sample using a Coulter Multisizer 3 particle counter (Beckman Coulter Inc., Brea, California). Prior to counting, we suspended pollen in 20 mL 0.9% saline. To obtain a representative count of the number of pollen grains in each flower, we took the average of four 1mL subsamples and multiplied the mean by the total volume of the sample. These counts included the number of pollen grains in undehisced anthers because undehisced anthers opened and emptied during the counting process.
DOI: 10.5061/dryad.8nj84/2
title: Anther Dehiscence

description: To estimate the pollen presentation schedule in each population, we tracked anther dehiscence in ten male-phase flowers on each day of data collection. Prior to first anther dehiscence, we arbitrarily chose ten fresh male-phase flowers and marked them with dental floss and a label. Every 30 minutes, we recorded the temperature and then returned to these flowers and recorded the number of locules dehisced (two locules per anther for a total of ten locules). We concluded tracking each flower when all ten locules had dehisced or, if the ten locules did not dehisce completely, when insect activity ceased.
DOI: 10.5061/dryad.9gd3n/10
title: Sequences of index and primers

description: This pack contains 4 files, "forward_index.txt" and "reverse_index" are index sequences for demultiplexing reads to samples, and "primers.txt" was primer sequences for classifying reads to loci, and "sample_config.txt" is index config for samples. These files were used to genotype 32 taimen samples which collected from the Hutou section of the Wusuli River (E133˚40´17″, N45˚58´50˝) .  The raw reads sequenced with Illumina HiSeq2500 platform in 250 Pair-End mode were deposited to in the European Nucleotide Archive under the project ID PRJEB19675 with accession number ERR2029723.
DOI: 10.5061/dryad.9gd3n/11
title: Pipeline for characterizing polymorphism and defining genotype of microsatellite markers

description: This pack contains DeMultiIndex binary files, SSRGeno binary files(Linux 64 bit and MacOS 64bit system), an R script for drawing allele depth barplot and a manual document.
DOI: 10.5061/dryad.9gd3n/8
title: ORF prediction

description: TransDecoder (https://transdecoder.github.io/) was used to predict the open reading frames (ORFs) and translate proteins, and homology searches against pFam and Uniprot databases were performed as supporting evidence for the ORFs. The ORFs with fewer than 30 amino acids were discarded.
DOI: 10.5061/dryad.9gd3n/9
title: Microsatellite Primers

description: Sputnik software was used to search di-, tri-, tetra-, pena- and hex-nucleotide motif SSRs. Primers were designed using the Primer3 package.After aligning the amplicon sequences to the Atlantic salmon genome with BLAT, primers were chose  because their amplicons were located in the genome of Atlantic salmon with identities &gt;70% and spanned distances close to the length of the amplicons.
DOI: 10.5061/dryad.9gh90/1
title: Supplementary Material

description: Supplementary figures and online appendices 1 and 2.
DOI: 10.5061/dryad.9gh90/2
title: Online Appendix 3

description: Morphological measurements and geographic provenance of male specimens of Geospiza ground-finches employed in analyses.
DOI: 10.5061/dryad.9gh90/3
title: Online Appendix 4

description: R code employed to conduct analyses
DOI: 10.5061/dryad.bc507/6
title: Appendix S6: Data file for analysis of Caenophidia only

description: This text file of data for the Caenophidia only (data_Matlab_JLT_8_Caenophidia.txt) was input to the RegressionV2.m program in Matlab for our analyses. The order species corresponds to the order in the DSC phylogeny file (Appendix S2).
DOI: 10.5061/dryad.dq04j/1
title: Data from: Function and flexibility of object exploration in kea and New Caledonian crows

description: Data on object exploration and choices during test trials, coded in the Observer XT and then extracted for analysis in
SPSS. All excel tabs are labeled with the Experiment and GLMM number (e.g., Exp1GLMM2), and include a legend
describing each of the variables featured in the analysis.
DOI: 10.5061/dryad.g00b7/1
title: raw_RAD_data_unreplicated_samples

description: This archive contains the raw RAD sequence data (after initial filtering by the sequencing company) for the 21 un-replicated samples of Labeobarbus natalensis used in this study given as paired-end FastQ read files. Sequence data was generated by an Illumina HiSeq 2000. Read 1 files (_1) are associated with the enzyme NlaIII, whereas Read 2 files (_2) are the paired reads associated with MluCI.
FastQ files are in the standard format, with all barcodes and adapters trimmed (apart from any pollution due to overlap - refer to paper). Sample names match the names in the publication Supporting Information Table S1. For more information consult the ReadMe and publication.
DOI: 10.5061/dryad.g00b7/2
title: raw_RAD_data_replicated_samples

description: This archive contains the raw RAD sequencing data files in paired-end FastQ format for the two replicated Labeobarbus natalensis samples used in the study, BLU004 (BLA004) and KNU017 (KNB017). Sequence data was generated by an Illumina HiSeq 2000. This data has not undergone initial filtering by the sequencing company. FastQ files are in the standard format, with all barcodes and adapters trimmed (apart from any pollution due to overlap). The two samples are presented differently - for more information please refer to the ReadMe and the publication.
DOI: 10.5061/dryad.g00b7/3
title: final_dataset_and_input_files

description: This archive contains several output files from Stacks for the final dataset of 723 SNPs across 23 samples of Labeobarbus natalensis. We also include input files for each of the downstream analysis programs used in this study for the final dataset. The formats given include .arp, .genepop, .gtx, .structure, .vcf and .geste. For a more detailed breakdown of each file, please refer to the ReadMe.
DOI: 10.5061/dryad.g00b7/4
title: regular_expressions_removing_adapter_pollution

description: This file contains information on the regular expressions we used to remove adapter pollution from our sequence data.
DOI: 10.5061/dryad.g8143/1
title: PlosOne_supporting_information_files

description: NanoString gene analysis raw data files
DOI: 10.5061/dryad.gb682/1
title: Mouse_data

description: Counts of adults worms and miracidea of 3 different lines (susceptible, resistant and mixed resistant-susceptible) inside the mouse host exposed to three different treatments: control, low praziquantel dose and high praziquantel dose; across 4 generations. Mouse health parameters such as body, spleen and liver weight also available.
DOI: 10.5061/dryad.gb682/2
title: Snail_data

description: Counts of cercariae of 3 different lines (susceptible, resistant and mixed resistant-susceptible) inside 2 different species of snail host, across 4 generations. The cercariae are from worms that had been exposed to three different treatments: control, low praziquantel dose and high praziquantel dose during passage in the mouse host. Snail health parameters such as egg masses and offspring production also available.
DOI: 10.5061/dryad.h0f41/1
title: S1

description: Diagram showing how simple, non-branching filaments could result in the observed overlapping patterns seen in Sinosauropteryx. A, simple, non-branching filaments arranged in multiple, parallel tracts in vivo with some tracks more latero-ventral on the tail than others. B, filaments in A copied but where the area representing the flesh of the tail in vivo is not preserved. Only filaments dorsal to the tail are visible, as is mostly the case in such fossil specimens. Selective preservation of filaments dorsal to the vertebra gives the illusion of branching structures.
DOI: 10.5061/dryad.h0f41/2
title: S2

description: Table of observations on Sinosauropteryx contour feathers and how they are expected support various plausible morphologies. Does the observation support a particular morphology? Y, yes. “?”, maybe or uncertain. N, no. Scoring system is arbitrary with Y=1, “?”=0.5, and N=0. Highest score is the tentatively preferred morphology.
DOI: 10.5061/dryad.hr3s0/1
title: data Hegemann et al 2017 FrontZool

description: All data for the publication "Hegemann A, Pardal S & Matson KD: Indices of immune function used by ecologists are mostly unaffected by repeated freeze-thaw cycles and methodological deviations. Frontiers in Zoology 14:43" divided over 4 different sheets
DOI: 10.5061/dryad.k67fv/1
title: Phenotypic data for sympatric samples of Geum

description: Phenotypic data for sympatric Geum samples from Berwickshire.   R= G. rivale, U = G. urbanum; First flower = week after April 1st 2014; Duration = weeks over which flowering occurred
DOI: 10.5061/dryad.kd1d4/20
title: CHELSA_temp10_8_land
DOI: 10.5061/dryad.kd1d4/21
title: CHELSA_temp10_9_land
DOI: 10.5061/dryad.kd1d4/22
title: CHELSA_temp10_10_land
DOI: 10.5061/dryad.kd1d4/23
title: CHELSA_temp10_11_land
DOI: 10.5061/dryad.kd1d4/25
title: CHELSA_temp10_12_land
DOI: 10.5061/dryad.kd1d4/26
title: CHELSA_tmin10_1_land
DOI: 10.5061/dryad.kd1d4/27
title: CHELSA_tmin10_2_land
DOI: 10.5061/dryad.kd1d4/28
title: CHELSA_tmin10_3_land
DOI: 10.5061/dryad.kd1d4/29
title: CHELSA_tmin10_4_land
DOI: 10.5061/dryad.mc460/2
title: CALLUNA_ISOTOPES

description: Values of δ13C in Calluna vulgaris leaves and annual precipitation of year before sample collection (Data in Box 1B from Andresen et al., 2018).
DOI: 10.5061/dryad.mc460/7
title: 13CPLFA_UK

description: Results of a 13C-CO2 pulse experiment conducted along a gradient of soil moisture at the Clocaenog site (UK). Values correspond to 13C content in different phospholipid-derived fatty-acid methyl esters (FAMEs) extracted from soils after the 13C-pulse (Data in Box 3B from Andresen et al., 2018).
DOI: 10.5061/dryad.mm720.1
title: Data from: Test flattening in the larger foraminifer Heterostegina depressa: predicting bathymetry from axial sections
DOI: 10.5061/dryad.mm720.2
title: Data from: Test flattening in the larger foraminifer Heterostegina depressa: predicting bathymetry from axial sections
DOI: 10.5061/dryad.mm720.2/1.2
title: Supplementary Data3

description: Template for the calculation of the growth-invariant characters
DOI: 10.5061/dryad.mm720.2/2.2
title: Supplementary Data1
DOI: 10.5061/dryad.mm720.2/3.2
title: SupplementaryData2
DOI: 10.5061/dryad.mm720/2
title: Supplementary Data1
DOI: 10.5061/dryad.mm720/3
title: SupplementaryData2
DOI: 10.5061/dryad.p55m7/2
title: Scherberich-Data

description: Please find in the excel file the data for Fig. 1 – 3.
DOI: 10.5061/dryad.p8440/11
title: 2v4.9068_nobenefit

description: Simulations were ran with expansion-collision dynamics where initial cell-cell distance equals 0 and benefit equals 0.
DOI: 10.5061/dryad.p8440/12
title: 2v9_8neighbors/24neighbors

description: Simulations (sheet 'parameter2', 'outgrid2', 's' and 'heatmap2') were ran with expansion-collision dynamics with initial cell-cell distance equals 3 and difusivity equals 1/9. Spreadsheet 'parameter3', 'outgrid3', 's' and 'heatmap' are results for the conditions where initial cell-cell distance is 3 and difusivity equals 1/25.
DOI: 10.5061/dryad.p8440/13
title: 2v8_8neighbors

description: Simulations (spreadsheet 'parameter2', 'outgrid2', 's' and 'heatmap2') were ran with expansion-collision dynamics with initial cell-cell distance equals 2 and difusivity equals 1/9.
DOI: 10.5061/dryad.p8440/14
title: 2v9_1neighbor/12neighbors/16neighbors

description: Simulations were ran with expansion-collision dynamics with initial cell-cell distance equals 3 and difusivity equals 1 (sheet '1_heatmap', 1/13 (spreadsheet '12_heatmap'), and 1/17 (sheet '16_heatmap').
DOI: 10.5061/dryad.p8440/15
title: 2v7_8neighbors

description: Simulations were ran with expansion-collision dynamics with initial cell-cell distance equals 1 and difusivity equals 1/9.
DOI: 10.5061/dryad.p8440/16
title: 2v7_NoWeighingDispersal

description: Simulations were ran with expansion-collision dynamics and the initial cell-cell distance equals 1 and the assumption of weighted dispersal was relaxed.
DOI: 10.5061/dryad.p8440/17
title: 2v8_NoWeighingDispersal

description: Simulations were ran with expansion-collision dynamics and the initial cell-cell distance equals 2 and the assumption of weighted dispersal was relaxed.