cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.cvacww
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Hymenoscyphus ericae"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002777-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.rbnzs7hb1
title: LPCAT1 promotes cSCC development via EGFR

description: Cutaneous squamous cell carcinoma (cSCC) is the second most common form of
 skin cancer. LPCAT1, a lysophosphatidylcholine acyltransferase,
 takes a center stage in membrane lipid remodeling. LPCAT1
 is elevated in several cancers and contributes to cancer
 development. However, its role and molecular mechanisms in cSCC remain to
 be elucidated. In this study, we found that LPCAT1 was upregulated in cSCC
 tissues and in cell lines. In vitro, loss-of-function and
 gain-of-function experiments demonstrated that LPCAT1 facilitated cSCC
 cell proliferation, protected cells against apoptosis, accelerated
 epithelial‒mesenchymal transition, and enhanced cell metastasis.
 Mechanistically, LPCAT1 regulated EGFR signaling. The oncogenic effect
 of LPCAT1 was mediated by EGFR/protein kinase B and EGFR/p38MAPK
 pathways in cSCC. Using the xenograft mouse model, we
 consolidated the results mentioned earlier. In conclusion, LPCAT1
 contributed to cSCC progression through EGFR-mediated protein
 kinase B and p38MAPK signaling pathways. LPCAT1 may serve as
 a target for therapeutic intervention in cSCC. And the datasets
 related to this study are available in this repository.
DOI: 10.5061/dryad.s1rn8pk70
title: Architectural plasticity in response to population density in Abutilon theophrasti (Malvaceae)

description: Background and Aims An increase of population density may result
 in the spatial and temporal heterogeneity of resources at minor scales
 than an individual, inducing different modular responses at different
 positions of a plant, or architectural plasticity. To better understanding
 how plants respond to density via plasticity in architecture, we conducted
 a field experiment with an annual species of Abutilon theophrasti. Key
 Results Increased density had different effects for different layers of
 modular traits, and effects also varied with different stages; high
 density also reduced variations among layers in different traits. No
 variation due to density or among different layers was found in
 reproductive mass and branch traits. Conclusions An increase of
 density can induce contrasting responses in different layers of a
 trait and in different traits of a module, indicating trade-offs between
 layers and between traits, and low to intermediate competition strength
 was more likely to induce active response in more layers.
 It suggested that plants are able to deal with competition via
 several strategies simultaneously, producing an integrated phenotype.
 These conclusions further contributed to the complexity of plant
 plasticity to density.
description: We subjected plants to low, medium and high densities, and
 harvested them at different stages, when we separated each individual
 plant into different layers every 10 cm or 20 cm, and measured a series of
 traits per layer and analyzed variations in them among layers and due to
 density and stage.
DOI: 10.5061/dryad.dbrv15f0w
title: Data on land prices and lengths of railroads in Russia's provinces from 1885 to 1910

description: This paper shows that railroad building in Russia, as in Europe and the US
 in the nineteenth century, improved the value of land, a classic benefit
 of transportation investment in largely agrarian countries. From a
 database constructed for this paper, we use cross-sectional data for the
 fifty European Russian regions to show the association of the length of
 the railroad (measured in 1894), land prices (measured in 1900) and annual
 growth of land prices (in rubles) for 1885-1910.  
description: The "dta" database, compiled by Maria Karpenko and
 Roman Konchakov at the Center for Russian Studies, the Russian
 Presidential Academy of the National Economy and Public Administration,
 2014-2019, links the following sources by town (in chronological
 order): <i>Statisticheskie tablitsi o sostoianii gorodov Rossiiskoi imperii. 1840 (statisticheskie dannie za 1840 g.) [</i>Statistics on the state of towns in the Russian Empire, 1840 (data for 1840)]. St Petersburg: Council of the Ministry of Internal Affairs, tipog. K. Kraia, 1840. <i>Statisticheskie tablitsi o sostoianii gorodov Rossiskoi imperii. 1852 (po 1 maia 1847 goda) </i>[Statistics on the state of towns in the Russian Empire, 1852 (data are recorded on 1 May 1847)], compiled by the Council of the Ministry of Internal Affairs, St Petersburg: tipograf. Ministry of Internal Affairs, 1852. <i>Ekonomicheskoe sostoianie gorodov za 1870 g. (dannie po naseleniiu otnosiatsia k 1870 godu. sredneie chislo gorodskikh dokhodov ukazano za 3 goda: s 1868-1870. nalogi na nedvizhimoe imushchestvo za 1871 g.)</i> [The economic state of towns for 1870 (population data for 1870, average city revenue over three years, 1867-1870, real estate tax for 1871)], Statisticheskii vremennik Rossiiskoi imperii. Nalichnoe naseleniie Imperii za 1870 g. Vypusk X/ obr. L. Karachunskii. [Current statistics of the Russian Empire, Population of the Empire for 1870, Issue X, by L. Karachunskii], St Petersburg: Tipog. V. Bezobrazova and Co., 1875. <i>Statistika Rossiiskoi Imperii. I. Sbornik svedenii po Rossii za 1884-1885 gg.</i> [Statistics of the Russian Empire. I. Collection of information on Russia for 1884-1885]. St. Petersburg: Central Statistical Committee of the Ministry of Internal Affairs, 1887. <i>Pervaia Vseobshchaia perepis’ naseleniia Rossiiskoi imperii 1897 goda</i> [First General Census of the Russian Empire in 1897<i>].</i>Ed. N. A. Troinitskii, St. Petersburg, 1897-1905. <i>Goroda Rossii v 1904 godu. 1906 (statistika za 1904 god) </i>[Towns of Russia in 1904, 1906 (data for 1904<i>)]</i> Central Statistical Committee, Ministry of Internal Affairs: tipog Nyrkina, 1906-1914. <i>            Other Data Source:</i> Koval'chenko I.D., and Borodkin L.I. (1988). Two paths of bourgeois agrarian evolution in European Russia: An essay in multivariate analysis. <i>The Russian Review,</i> <i>47,</i> 391-408.
description: Variable names are uploaded with datafile.
DOI: 10.5061/dryad.1jwstqjtq
title: A floral checklist for Wheaton Regional Park, Montgomery County, Maryland

description: Wheaton Regional Park is a suburban 500-acre park in Montgomery County,
 Maryland on the northern edge of the Washington, DC metropolitan area.
 Early floristic surveys of the park, conducted between 1961-1964 when the
 park was founded, showed the park to be diverse, with 443 taxa of vascular
 plants. Our research team conducted a second round of floristic surveys
 between 2014-2019 to update the checklist of plants in the park. Here, we
 present a comprehensive checklist of all species collected in the park
 over the past fifty years, discuss recent plant introductions, and share a
 platform for a digital flora of the park through the Mid-Atlantic
 Megalopolis online portal. We documented 393 vascular plant species from
 the 1960s, as part of a comprehensive review of those collections. The
 2010s collections recorded 293 vascular plant species, and an additional
 16 species of bryophytes. In total, 554 species of plants (vascular and
 non-vascular) in 326 genera and 118 families have been recorded in Wheaton
 Region Park over the past 60 years. We found that the surveys in the 2010s
 identified a substantial number of vascular plant species that were not
 recorded in the 1960s surveys. Additionally, we were able to recover less
 than half of the vascular plants recorded in the 1960s. The proportion of
 non-native vascular plant species increased from 22.1% in the 1960s to
 34.2% in the 2010s. We offer recommendations for preserving the extant
 diversity of native plants in the park.
DOI: 10.5061/dryad.bcc2fqzbq
title: How hornbills handle heat: sex-specific thermoregulation in the southern yellow-billed hornbill

description: At a global scale, thermal physiology is correlated with climatic
 variables such as temperature and aridity. There is also evidence that
 thermoregulatory traits vary with fine-scale microclimate, but this has
 received less attention in endotherms. Here we test the hypothesis that
 avian thermoregulation varies with microclimate and behavioural
 constraints in a non-passerine bird. Male and female southern
 yellow-billed hornbills (Tockus leucomelas) experience markedly different
 microclimates while breeding, with the female sealing herself into a tree
 cavity and moulting all her flight feathers during the breeding attempt,
 becoming entirely reliant on the male for provisioning. We examined
 interactions between resting metabolic rate (RMR), evaporative water loss
 (EWL) and core body temperature (Tb) at air temperatures (Ta) between 30°C
 and 52°C in male and female hornbills, and quantified evaporative cooling
 efficiencies and heat tolerance limits. At thermoneutral Ta, neither RMR,
 EWL nor Tb differed between sexes. At Ta &gt; 40°C, however, RMR and
 EWL of females were significantly lower than those of males, by ~13% and
 ~17%, respectively, despite similar relationships between Tb and Ta,
 maximum ratio of evaporative heat loss to metabolic heat production and
 heat tolerance limits (~50°C). These sex-specific differences in hornbill
 thermoregulation support the hypothesis that avian thermal physiology can
 vary within species in response to fine-scale microclimatic factors. In
 addition, Q10 for RMR varied substantially, with Q10 ≤ 2 in some
 individuals supporting recent arguments that active metabolic suppression
 may be an under-appreciated aspect of endotherm thermoregulation in the
 heat.
description: Data were collected using flow-through respirometry. See paper
 text for details.
DOI: 10.5061/dryad.mpg4f4qz7
title: Heat tolerance in desert rodents is correlated with microclimate at inter- and intraspecific levels

description: Physiological diversity in thermoregulatory traits has been extensively
 investigated in both endo- and ectothermic vertebrates, with many studies
 revealing that thermal physiology has evolved in response to selection
 arising from climate. The majority of studies have investigated how
 adaptative variation in thermal physiology is correlated with broad-scale
 climate, but the role of fine-scale microclimate remains less clear. We
 hypothesised that the heat tolerance limits and evaporative cooling
 capacity of desert rodents are correlated with microclimates within
 species-specific diurnal refugia. We tested predictions arising from this
 hypothesis by comparing thermoregulation in the heat among arboreal
 black-tailed tree rats (Thallomys nigricauda), Namaqua rock rats
 (Micaelamys namaquensis) and hairy-footed gerbils (Gerbillurus paeba).
 Species and populations that occupy hotter diurnal microsites tolerated
 air temperatures (Ta) ~2-4℃ higher compared to species occupying cooler,
 more thermally-buffered microsites. Inter- and intraspecific variation in
 heat tolerance was attributable to ~30% greater evaporative water loss and
 ~29% lower resting metabolic rates at high Ta, respectively. Our results
 suggest that microclimates within rodent diurnal refugia are an important
 correlate of intra- and interspecific physiological variation and
 reiterate the need to incorporate fine-scale microclimatic conditions when
 investigating adaptative variation in thermal physiology.
description: Data collected using flow-through respirometry. See paper text
 for details.
DOI: 10.5061/dryad.n8pk0p2tt
title: Base-excess chloride: the best approach to evaluate the effect of chloride on the acidbase status: a retrospective study

description: To practically determine the effect of chloride on the acid-base status,
 four approaches are currently used: accepted ranges of serum
 chloride values; chloride corrections; the serum Cl/Na ratio; and
 the serum sodium-chloride difference. However, these approaches
 are governed by different concepts. Our aim is to investigate
 which approach to the evaluation of the effect of chloride is the
 best. In this retrospective cohort study, 2529 critically ill
 patients who were admitted to the tertiary care unit between 2011
 and 2018 were retrospectively evaluated. The effects of chloride
 on the acid-base status according to each evaluative approach
 were validated by the standard base excess and apparent strong
 ion difference. To compare approaches, kappa and Bland-Altman
 tests and a linear regression model were used. In the linear
 regression model, only base-excess chloride in all the chloride
 evaluation approaches was significantly related to the standard
 base excess. In the subgroup, limits of agreement between
 base-excess chloride and the standard base excess were the
 closest (bias: 0.5mmol/L). For the evaluation of the effect of
 chloride on the acid-base status, base-excess chloride is a
 better approach than accepted ranges of serum chloride values,
 chloride corrections and the Cl/Na ratio.
description: All data were fully anonymized without restriction after the
 ethic committee approval and ethic committee waived the requirement for
 informed consent. Data collecting was started on 01.01.2018 and
 2529 patients who were admitted to the tertiary intensive care unit (ICU)
 in Acıbadem International Hospital between January 1st, 2011, and January
 1st, 2018 were retrospectively evaluated.
DOI: 10.5061/dryad.hdr7sqvh8
title: Contrasting early successional dynamics of bacterial and fungal communities in recently deglaciated soils of the maritime Antarctic

description: Although microorganisms are the very first colonizers of recently
 deglaciated soils even prior to plant colonization, the drivers and
 patterns of microbial community succession at early-successional stages
 remain poorly understood. The successional dynamics and assembly processes
 of bacterial and fungal communities were compared on a glacier foreland in
 the maritime Antarctic across the ~10-year soil-age gradient from bare
 soil to sparsely vegetated area. Bacterial communities shifted more
 rapidly than fungal communities in response to glacial retreat; species
 turnover (primarily the transition from glacier- to soil-favoring taxa)
 contributed greatly to bacterial beta diversity, but this pattern was less
 clear in fungi. Bacterial communities underwent more predictable (more
 deterministic) changes along the soil-age gradient, with compositional
 changes paralleling the direction of changes in soil physicochemical
 properties following deglaciation. In contrast, the compositional shift in
 fungal communities was less associated with changes in
 deglaciation-induced changes in soil geochemistry and most fungal taxa
 displayed mosaic abundance distribution across the landscape, suggesting
 that the successional dynamics of fungal communities are largely governed
 by stochastic processes. A co-occurrence network analysis revealed that
 biotic interactions between bacteria and fungi are very weak in early
 succession. Taken together, these results collectively suggest that
 bacterial and fungal communities in recently deglaciated soils are largely
 decoupled from each other during succession and exert very divergent
 trajectories of succession and assembly under different selective forces.
description: Supplementary Table.S1-S2.xlsx : Metadata
 consists of soil physicochemical properties and a summary of the
 sequencing result for bacterial and fungal communities of glacier foreland
 in Potter Cove on King George Island.
 potter.bac.comm.txt : Bacterial(16S V4 region)
 ASV table potter.fun.comm.txt :
 Fungal(ITS2 region) ASV table
DOI: 10.5061/dryad.f7m0cfxvd
title: Pleistocene range expansion throughout the Mediterranean and back-colonization from the Canary Islands in the legume Bituminaria bituminosa

description: Aim: Species with widespread distributions offer excellent
 opportunities for investigating recent biogeographical patterns across
 broad scales. Here, we tested the hypothesis that, due to its intermediate
 geographical location, NW Africa is pivotal in explaining the
 phylogeographical patterns of taxa with Mediterranean-Macaronesian
 distributions using a legume species with short generation times.
 Region: Mediterranean, with a focus on NW Africa and the Canary
 Islands Taxon: Pitch trefoil ( Bituminaria bituminosa)
 Methods: We generated genetic data and performed
 phylogeographical and demographic analyses at two geographical scales:
 Mediterranean Basin (MB), using plastid sequences (115 individuals), and
 Macaronesia, using plastid sequences (182 individuals) and 10 nuclear
 microsatellite loci (220 individuals). We also performed a literature
 survey focusing on phylogeographical studies of other circum-Mediterranean
 taxa. Results: North-west Africa was identified as a center of
 genetic diversity (19 out of 38 haplotypes) and demographic expansion of
 B. bituminosa in the MB during the Pleistocene. Our literature
 review revealed two main phylogeographical patterns in widespread species:
 pre-Mediterranean evergreen sclerophylls vs. Pleistocene
 facultative-deciduous (including Bituminaria) taxa, but on average both
 functional groups show a similar, large genetic diversity (c. 40% of
 haplotypes) in NW Africa. At the Macaronesian scale, we found that
 Canarian Bituminaria is composed of two genetic sublineages that
 coexist and hybridize on the central islands and in the mainland
 Macaronesian enclave (Anti-Atlas region). Demographic analyses rejected
 the progression rule as the model of island colonization, but strongly
 suggested that Anti-Atlas populations are the result of back-colonization
 from the easternmost islands before the Last Glacial Maximum (LGM).
 Conclusions: Bituminaria displays a pattern of
 Quaternary eastward expansion in the MB that appears to be paralleled by
 several members of its functional plant group. Thus, our study reveals a
 previously undescribed dual role of NW Africa in plant biogeography,
 acting both as a source of species expansion to the rest of the MB and a
 LGM refugium of plant populations with a Macaronesian island origin.
description: This data set includes microsatellite allele scoring data and the
 scripts for ABC analyses.
DOI: 10.5061/dryad.5qfttdz4d
title: Species ecology explains the various spatial components of genetic diversity in tropical reef fishes

description: Generating genomic data for 19 tropical reef fish species of the Western
 Indian Ocean, we investigate how species ecology influences genetic diver-
 sity patterns from local to regional scales. We distinguish between the α,
 β and γ components of genetic diversity, which we subsequently
 link to six ecological traits. We find that the α and
 γ components of genetic diversity are strongly correlated so that
 species with a high total regional genetic diversity display
 systematically high local diversity. The α and
 γ diversity components are negatively associated with species
 abundance recorded using underwater visual surveys and positively with
 body size. Pelagic larval duration is found to be negatively related to
 genetic β diversity supporting its role as a dispersal
 trait in marine fishes. Deviation from the neutral theory of molecular
 evolution motivates further effort to understand the processes shaping
 genetic diversity and ultimately the diversification of the exceptional
 diversity of tropical reef fishes.
description: Data files and R codes used to perform analyses in Donati et al.
 "Species ecology explains the various spatial components of genetic
 diversity in tropical reef fishes".
 Donati_et_al_Species_ecology_genetic_diversity_data.zip
 Donati_et_al_Species_ecology_genetic_diversity_R_codes.zip
DOI: 10.5061/dryad.kh189324v
title: In a nutshell, a reciprocal transplant experiment reveals local adaptation and fitness trade-offs in response to urban evolution in an acorn-dwelling ant

description: Urban-driven evolution is widely evident, but whether these changes confer
 fitness benefits and thus represent adaptive urban evolution is less
 clear. We performed a multi-year field reciprocal transplant experiment of
 acorn-dwelling ants across urban and rural environments. Fitness responses
 were consistent with local adaptation: we found a survival advantage of
 the ‘home’ and ‘local’ treatments compared to ‘away’ and ‘foreign’
 treatments. Seasonal bias in survival was consistent with evolutionary
 patterns of gains and losses in thermal tolerance traits across the
 urbanization gradient. Rural ants in the urban environment were more
 vulnerable in the summer, putatively due to low heat tolerance, and urban
 ants in the rural environment were more vulnerable in winter, putatively
 due to an evolved loss of cold tolerance. The results for fitness via
 fecundity were also generally consistent with local adaptation, if
 somewhat more complex. Urban-origin ants produced more alates in their
 home versus away environment, and rural-origin ants had a local advantage
 in the rural environment. Overall, the magnitude of local adaptation was
 lower for urban ants in the novel urban environment compared with rural
 ants adapted to the ancestral rural environment, adding further evidence
 that species might not keep pace with anthropogenic change.
DOI: 10.15468/dl.mjkhkr
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Panthera uncia",
 "Year 2020-2026"
 ]
}

 The dataset includes 19 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002779-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18286456
title: Global atmospheric boundary layer wind speed profile dataset derived from Aeolus observations from July 2020 to April 2023

description: Global-ABLWind is a global atmospheric boundary layer (ABL) wind speed profile dataset based on the first spaceborne LiDAR Aeolus covering the height range from 100 m to 2000 m above ground level at 100 m vertical resolution, spanning the period from July 2020 to April 2023.

The Aeolus has two receivers that simultaneously capture the signal from both the Rayleigh (Ray) and Mie channels. Similarly, this dataset also includes two versions based on Aeolus observations from different channels

The temporal and spatial resolution is identical to that of the Aeolus L2C product. The dataset is distributed as monthly NetCDF files, with filenames following the convention "Global-ABLWind_XXX_V1_YYYY_MM.nc", where XXX represents the channel (Ray or Mie), YYYY refers to the year, and MM is the month of the year.




standard_name (Variable name)
Dimensions
Units
Description


time
1
seconds since YYYY-MM-01 00:00:00
Average time of Aeolus observations used for the current wind profile, derived from the Aeolus L2C product


latitude
1
degrees_north
Average latitude of Aeolus observations used for the current wind profile, derived from the Aeolus L2C product


longitude
1
degrees_east




Average longitude of Aeolus observations used for the current wind profile, derived from the Aeolus L2C product




height
1
m
Height above ground level (AGL), fixed vertical grid from 100 m to 2000 m at 100 m intervals


wind_speed (ws)
2
m s⁻¹
Horizontal wind speed