cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.jj6jju
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ameroglossum bicolor"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010062-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29821319
title: Mapping Data - bacterial MAGs, bacterial contigs, and viral MAGs/contigs

description: Mapping data used in fractional abundance calculations for bacterial and viral communities. Mapping was performed with SMALT v0.7.6.
DOI: 10.6084/m9.figshare.29821319.v1
title: Mapping Data - bacterial MAGs, bacterial contigs, and viral MAGs/contigs

description: Mapping data used in fractional abundance calculations for bacterial and viral communities. Mapping was performed with SMALT v0.7.6.
DOI: 10.5281/zenodo.16738457
title: CROHN'S DISEASE AND OXALATE NEPHROLITHIASIS: A PATHOPHYSIOLOGICAL AND NUTRITIONAL GUIDE

description: Key takeaways:

     Crohn’s disease, significantly increases the risk of oxalate kidney stones due to fat malabsorption and altered intestinal barrier function.

     Gut inflammation, bowel resection, and microbiota changes (e.g., loss of Oxalobacter formigenes) further impair oxalate metabolism and excretion.

     Low urine volume, low citrate, and acidic pH in IBD patients create a high-risk environment for calcium oxalate crystal formation.

     Dietary management—including low-oxalate foods, adequate hydration, calcium intake with meals, and limiting fat—is crucial for prevention.
DOI: 10.5281/zenodo.16738458
title: CROHN'S DISEASE AND OXALATE NEPHROLITHIASIS: A PATHOPHYSIOLOGICAL AND NUTRITIONAL GUIDE

description: Key takeaways:

     Crohn’s disease, significantly increases the risk of oxalate kidney stones due to fat malabsorption and altered intestinal barrier function.

     Gut inflammation, bowel resection, and microbiota changes (e.g., loss of Oxalobacter formigenes) further impair oxalate metabolism and excretion.

     Low urine volume, low citrate, and acidic pH in IBD patients create a high-risk environment for calcium oxalate crystal formation.

     Dietary management—including low-oxalate foods, adequate hydration, calcium intake with meals, and limiting fat—is crucial for prevention.
DOI: 10.15468/dl.7jvtn4
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coelorhynchus argentatus"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010063-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sfp66e
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Achillea aucheri",
 "Geometry POLYGON ((26.04335 1.226334, 135.0263 1.226334, 135.0263 55.38525, 26.04335 55.38525, 26.04335 1.226334))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010064-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ck64qu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argemone mexicana",
 "Country is Vanuatu",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010066-250802193616735/datasets/export for details.
DOI: 10.15468/dl.kwd2ba
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "TaxonKey is Inga leonis"
 ]
}

 The dataset includes 142 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010065-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cd7b8y
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Copeina guttata)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 55 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010067-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28259492
title: Viral DB for Madracis Project

description: Pooled viral genomes and genome fragments from coral and seawater metagenomes collected in Curaçao. Viral contigs were identified by Genomad and Vibrant and binned by VRhyme. Viral bins are N-linked with 1000 Ns between contigs belonging to the same bin. All viral genomes were dereplicated at MIUViG standards (95% ANI over 80% AF) with CheckV's rapid genome clustering based on pairwise ANI. All viruses which had no viral genes and were reported to have a CheckV quality of “Not-determined” were removed from this database.
DOI: 10.6084/m9.figshare.28259492.v1
title: Viral DB for Madracis Project

description: Pooled viral genomes and genome fragments from coral and seawater metagenomes collected in Curaçao. Viral contigs were identified by Genomad and Vibrant and binned by VRhyme. Viral bins are N-linked with 1000 Ns between contigs belonging to the same bin. All viral genomes were dereplicated at MIUViG standards (95% ANI over 80% AF) with CheckV's rapid genome clustering based on pairwise ANI. All viruses which had no viral genes and were reported to have a CheckV quality of “Not-determined” were removed from this database.
DOI: 10.6084/m9.figshare.28216004
title: RScripts Curaçao 2022 Project

description: Map Figure (R Script) - V1 (Fig1A)Microscopy Box Plots (R Script) - V1 (Fig1C)Interaction Outcome Plots (R Script) - V1 (Fig2C; Fig2D)Bacterial Community Figures (R Script) - V1 (Fig3A; Fig3B, Fig3C)Viral Community Figures (R Script) - V1 (Fig4A; Fig4B, Fig4C; Fig5A; Fig5B)Provirus Genes (R Script) - V1 (Fig5C)Viral Genome Plots (R Script) - V1 (Fig5D)All associated data sheets<br>
DOI: 10.6084/m9.figshare.28216004.v1
title: RScripts Curaçao 2022 Project

description: Map Figure (R Script) - V1 (Fig1A)Microscopy Box Plots (R Script) - V1 (Fig1C)Interaction Outcome Plots (R Script) - V1 (Fig2C; Fig2D)Bacterial Community Figures (R Script) - V1 (Fig3A; Fig3B, Fig3C)Viral Community Figures (R Script) - V1 (Fig4A; Fig4B, Fig4C; Fig5A; Fig5B)Provirus Genes (R Script) - V1 (Fig5C)Viral Genome Plots (R Script) - V1 (Fig5D)All associated data sheets<br>
DOI: 10.7910/dvn/frzrm9
title: Replication Data for: Random Assignment with Non-Random Peers

description: Replication data for article forthcoming in REStat
DOI: 10.5281/zenodo.14982430
title: Data and scripts - Bacillus drives functional states in synthetic plant root bacterial communities

description: This Zenodo repository contains the supplementary tables and supplementary data of the manuscript Bacillus: driver of distinct functional states in plant root bacterial synthetic communities. Descriptions of what can be found in each supplemental table and datasheet is either included for each supplementary table or in the first sheet of the file (Supplementary Data)  

To recreate the figures, supplemental figures, and sPLS-DA results of the manuscript, the zip file Bacillus_functional_state_files.zip is required. Downloading and unzipping the file leads to a folder structure containing multiple files. The Rscripts in Rscripts_Bacillus_functional_states.R are connected to the underlying folder structure of this zip file. By inserting the full path to this folder structure at 'working_directory' in line 24 of theRscript, all files are loaded into R and the figures can be recreated.
DOI: 10.5281/zenodo.16738477
title: Data and scripts - Bacillus drives functional states in synthetic plant root bacterial communities

description: This Zenodo repository contains the supplementary tables and supplementary data of the manuscript Bacillus: driver of distinct functional states in plant root bacterial synthetic communities. Descriptions of what can be found in each supplemental table and datasheet is either included for each supplementary table or in the first sheet of the file (Supplementary Data)  

To recreate the figures, supplemental figures, and sPLS-DA results of the manuscript, the zip file Bacillus_functional_state_files.zip is required. Downloading and unzipping the file leads to a folder structure containing multiple files. The Rscripts in Rscripts_Bacillus_functional_states.R are connected to the underlying folder structure of this zip file. By inserting the full path to this folder structure at 'working_directory' in line 24 of theRscript, all files are loaded into R and the figures can be recreated.
DOI: 10.15468/dl.dcrwkj
title: Occurrence Download

description: A dataset containing 1227 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dipsas mikanii"
 ]
}

 The dataset includes 1227 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010068-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k3m5f6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Campylorhynchus brunneicapillus)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010071-250802193616735/datasets/export for details.
DOI: 10.15468/dl.xbn26d
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argemone mexicana",
 "Country is Venezuela (Bolivarian Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 33 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010072-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwhxnx
title: Occurrence Download

description: A dataset containing 40413 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Campylorhynchus brunneicapillus)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 40413 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010070-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5522/04/28608185
title: Survey experiment assessing UK public perceptions to social issues when presented with maps with and without personal narratives.

description: These are anonymized responses to a survey of 389 members of the UK public on their perceptions towards different maps about the social determinants of health. It was originally collected as part of a study described in the article 'Do personal narratives make thematic maps more persuasive? Integrating concrete examples into maps of the social determinants of health', in the Cartography and Geographic Information Science journal.The responses were collected in September 2024 on Qualtrics, via the recruitment platform Prolific.Participants were shown information on three social determinants of health (public transport, air pollution, youth services). For each topic, they were randomly shown one of three maps with varying levels of personal narratives presented. The type of map shown to each respondent can be found in columns 'transport_condition', 'pollution_condition', and 'youth_condition'. Most of the other variables refer to perceptions about those issues. For example, 'severity_pollution' refers to whether they deem air pollution a severe issue facing the country. Other variables include demographic information, chart literacy measured by four questions, and self-assessed confidence with charts.
DOI: 10.5522/04/28608185.v1
title: Survey experiment assessing UK public perceptions to social issues when presented with maps with and without personal narratives.

description: These are anonymized responses to a survey of 389 members of the UK public on their perceptions towards different maps about the social determinants of health. It was originally collected as part of a study described in the article 'Do personal narratives make thematic maps more persuasive? Integrating concrete examples into maps of the social determinants of health', in the Cartography and Geographic Information Science journal.The responses were collected in September 2024 on Qualtrics, via the recruitment platform Prolific.Participants were shown information on three social determinants of health (public transport, air pollution, youth services). For each topic, they were randomly shown one of three maps with varying levels of personal narratives presented. The type of map shown to each respondent can be found in columns 'transport_condition', 'pollution_condition', and 'youth_condition'. Most of the other variables refer to perceptions about those issues. For example, 'severity_pollution' refers to whether they deem air pollution a severe issue facing the country. Other variables include demographic information, chart literacy measured by four questions, and self-assessed confidence with charts.
DOI: 10.15468/dl.7wef8t
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cuora flavomarginata",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 162 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010073-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v6zcng
title: Occurrence Download

description: A dataset containing 504 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Italy",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Limosa limosa",
 "Year 1970-2020"
 ]
}

 The dataset includes 504 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010074-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15552611
title: Library of Identification Resources Catalog

description: This repository holds a catalog of identification resources, complete with bibliographical metadata and metadata on the type of key, the taxon/taxa it distinguishes, the geographical region it applies to, and the intended completeness.
DOI: 10.5281/zenodo.16738485
title: Library of Identification Resources Catalog

description: This repository holds a catalog of identification resources, complete with bibliographical metadata and metadata on the type of key, the taxon/taxa it distinguishes, the geographical region it applies to, and the intended completeness.
DOI: 10.15468/dl.n882g5
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-14 42,-7 26,9 38,-14 42))",
 "Elevation is greater than or equal to 5000m"
 ]
}

 The dataset includes 99 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010077-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3cq4ss
title: Occurrence Download

description: A dataset containing 25325 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is BRA.6_1",
 "Year 2014-2024"
 ]
}

 The dataset includes 25325 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010075-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29821406
title: Supplementary Material for: Anti-PLA2R IgG4-to-IgG Ratio Helps to Predict Remission of PLA2R-Associated Primary Membranous Nephropathy

description: Background and Aims: PLA2R-associated primary membranous nephropathy (PMN) was classified as IgG4-associated autoimmune disease in which anti-PLA2R antibody is predominantly IgG4 subclass. Our objective was to explore the capability of anti-PLA2R IgG4-to-IgG ratio for predicting remission in PLA2R-associated PMN patients. Methods: 143 patients with anti-PLA2R IgG ≥14 RU/ml were biopsy-confirmed as PLA2R-associated PMN. Serum samples collected at the time of renal biopsy were tested for anti-PLA2R IgG and anti-PLA2R IgG4 using time-resolved fluoroimmunoassay. The anti-PLA2R IgG4-to-IgG ratio was calculated as anti-PLA2R IgG4 (ng/ml) divided by anti-PLA2R IgG (RU/ml). Patients were divided into high ratio and low ratio groups by cutoff value of 31.5 ng/RU determined by the maximally selected log-rank statistic. The relationship between anti-PLA2R IgG4-to-IgG ratio and remission was analyzed using Cox proportional hazard regression. Results: Compared to the low ratio group, patients in the high ratio group were significantly younger (52 [40-60] vs. 58 [51-61] years, p=0.035), had higher eGFR (102 [88-111] vs. 94 [72-100] ml/min/1.73m2, p=0.004), obtained higher 6-month partial remission rates (64.6% vs. 30.0%, p=0.001) and 1-year complete remission rates (38.3% vs. 7.7%, p=0.003). The higher remission rates with high ratio remained in both moderate-low risk and high risk subgroups categorized according to KDIGO 2021 guidelines. Anti-PLA2R IgG4-to-IgG ratio had a significant positive relation with partial remission (HR [95%CI] = 2.09 [1.27-3.46], p=0.004), which also persisted across both risk subgroups. Kaplan-Meier survival curves confirmed the significantly higher partial remission in high ratio group. Conclusion: An elevated anti-PLA2R IgG4-to-IgG ratio may be a supplementary predictor for remission in PLA2R-associated PMN.
DOI: 10.6084/m9.figshare.29821406.v1
title: Supplementary Material for: Anti-PLA2R IgG4-to-IgG Ratio Helps to Predict Remission of PLA2R-Associated Primary Membranous Nephropathy

description: Background and Aims: PLA2R-associated primary membranous nephropathy (PMN) was classified as IgG4-associated autoimmune disease in which anti-PLA2R antibody is predominantly IgG4 subclass. Our objective was to explore the capability of anti-PLA2R IgG4-to-IgG ratio for predicting remission in PLA2R-associated PMN patients. Methods: 143 patients with anti-PLA2R IgG ≥14 RU/ml were biopsy-confirmed as PLA2R-associated PMN. Serum samples collected at the time of renal biopsy were tested for anti-PLA2R IgG and anti-PLA2R IgG4 using time-resolved fluoroimmunoassay. The anti-PLA2R IgG4-to-IgG ratio was calculated as anti-PLA2R IgG4 (ng/ml) divided by anti-PLA2R IgG (RU/ml). Patients were divided into high ratio and low ratio groups by cutoff value of 31.5 ng/RU determined by the maximally selected log-rank statistic. The relationship between anti-PLA2R IgG4-to-IgG ratio and remission was analyzed using Cox proportional hazard regression. Results: Compared to the low ratio group, patients in the high ratio group were significantly younger (52 [40-60] vs. 58 [51-61] years, p=0.035), had higher eGFR (102 [88-111] vs. 94 [72-100] ml/min/1.73m2, p=0.004), obtained higher 6-month partial remission rates (64.6% vs. 30.0%, p=0.001) and 1-year complete remission rates (38.3% vs. 7.7%, p=0.003). The higher remission rates with high ratio remained in both moderate-low risk and high risk subgroups categorized according to KDIGO 2021 guidelines. Anti-PLA2R IgG4-to-IgG ratio had a significant positive relation with partial remission (HR [95%CI] = 2.09 [1.27-3.46], p=0.004), which also persisted across both risk subgroups. Kaplan-Meier survival curves confirmed the significantly higher partial remission in high ratio group. Conclusion: An elevated anti-PLA2R IgG4-to-IgG ratio may be a supplementary predictor for remission in PLA2R-associated PMN.
DOI: 10.15468/dl.upkpzv
title: Occurrence Download

description: A dataset containing 21573 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Helianthus annuus",
 "Country is one of (United States of America, Canada)",
 "Year is greater than or equal to 1979"
 ]
}

 The dataset includes 21573 records from 205 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010076-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.