cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6752882.v1
title: Supplementary material from: The evolution of egg shape in birds: selection during the incubation period

description: <pre>These files are supplements for Birkhead TR, Thompson JE, Biggins JD, Montgomerie R (2018) The evolution of egg shape in birds: selection during the incubation period. Ibis in press, doi: 10.1111/ibi.12658 The files are: aukpenguinDATA.csv = all of the data analyzed in this paper; aukpenguin.Rmd = R script for all of the analyses reported in the main text plus the Supplementary Information for the paper. Also included are tests of statistical assumptions and some further exploration of the patterns reported. This file includes a summary of all the variables in the datafile (aukpenguinDATA.csv); aukpenguinTREE.phy = phylogenetic information in Newick format; BirkheadStatsSuppl.pdf = PDF generated by knitting aukpenguin.Rmd</pre>
DOI: 10.6084/m9.figshare.6752834
title: McDonnell et al 2018 supplementary TCRseq/immunoSEQ dataset

description: T cell receptor overlap data from McDonnell et al. 2018.
DOI: 10.17633/rd.brunel.6752825
title: Super-recognisers and controls - own-race and cross-race memory and matching dataset

description: Contains data from two tests of face memory (one with Caucasian faces; one with Chinese faces) and four tests of face matching (Caucasian, Asian, Middle Eastern/Arab, and Black faces). <br>Data for memory tests is percent correct. Data for matching tests is presented as percent hits (correctly identifying matches); percent CRs (correctly rejecting incorrect matches), percent overall accuracy, and the signal detection measures A and b (sensitivity and bias, respectively). <br>Data is presented for three groups of participants: Caucasian "super-recognisers" (who show extraordinary face recognition abilities); Caucasian typical perceivers; Asian typical perceivers (for Caucasian and Asian memory and matching tests only).
DOI: 10.6084/m9.figshare.6752798
title: data interoperability in GDPR.csv

description: Table contains four types of statements identified in the text of the GDPR that determine or influence the interoperability of information between entities. The first type of statement reflects a requirement for the interoperability and is abbreviated as REQ. Entities are expected to follow or fulfill this requirement for compliance. GDPR only states but does not stipulate how a requirement should be fulfilled. Where an activity or action is presented in the statement, these are identified as processes related to usage, sharing, publication, or exchange of information, and are annotated as PROC in the table. Where information is categorically mentioned or as information consisting of some form or category, the abbreviation DATA is used to identify such statements in the table. Where additional information about category or type of data is specified, this is annotated with FORMAT, with the statement either specifying an explicit data format or providing guidelines governing the choice of formats which are acceptable or need to be enforced.
DOI: 10.6084/m9.figshare.6752795
title: Secondary students’ modelling conceptualisation in situations related to particle dynamics: a clinical perspective

description: This study investigates the modelling conceptualisation of secondary school students in two situations related to particle dynamics: pendulum’s motion and horizontal motion. We performed in-depth clinical interviews with secondary school students (<i>N </i>=<i> </i>10). Participants’ ideas about properties which are not ‘given’ in empirical observations were explored in order to investigate signs of abstractions and idealisations in their reasoning processes. We proposed contributions to modelling in science education based on Mario Bunge’s epistemology and we employed his basic concepts as the axis to analyse our results: (1) abstractions and idealisations, considered as thought processes required to build conceptual counterparts of concrete objects; (2) theoretical models, meaning hypothetico-deductive systems concerning those conceptual objects; and (3) general theoretical frameworks that allow us to derive those theoretical models. We developed our analysis viewing the ideas presented by participants as concepts-in-action and theorems-in-action as regarded by Gérard Vergnaud’s Theory of Conceptual Fields. Results indicated a gradation in the concepts-in-action mobilised in terms of levels of idealisation and showed that participants do not spontaneously recognise the use of a general theory as a possible way to obtain a theoretical model. These results suggest that science education practices must pay better attention to make abstractions and idealisations explicit in scientific concepts formation, as well as to the heuristic role of theories in model construction.
DOI: 10.6084/m9.figshare.6752795.v1
title: Secondary students’ modelling conceptualisation in situations related to particle dynamics: a clinical perspective

description: This study investigates the modelling conceptualisation of secondary school students in two situations related to particle dynamics: pendulum’s motion and horizontal motion. We performed in-depth clinical interviews with secondary school students (<i>N </i>=<i> </i>10). Participants’ ideas about properties which are not ‘given’ in empirical observations were explored in order to investigate signs of abstractions and idealisations in their reasoning processes. We proposed contributions to modelling in science education based on Mario Bunge’s epistemology and we employed his basic concepts as the axis to analyse our results: (1) abstractions and idealisations, considered as thought processes required to build conceptual counterparts of concrete objects; (2) theoretical models, meaning hypothetico-deductive systems concerning those conceptual objects; and (3) general theoretical frameworks that allow us to derive those theoretical models. We developed our analysis viewing the ideas presented by participants as concepts-in-action and theorems-in-action as regarded by Gérard Vergnaud’s Theory of Conceptual Fields. Results indicated a gradation in the concepts-in-action mobilised in terms of levels of idealisation and showed that participants do not spontaneously recognise the use of a general theory as a possible way to obtain a theoretical model. These results suggest that science education practices must pay better attention to make abstractions and idealisations explicit in scientific concepts formation, as well as to the heuristic role of theories in model construction.
DOI: 10.6084/m9.figshare.6752753
title: Dub-seq: dual barcoded shotgun-expression library sequencing for high-throughput characterization of functional traits

description: Fitness effects of overexpressing genes from Escherichia coli across 55 conditions as measured with a shotgun expression library, dual barcodes, and sequencing.<br>
DOI: 10.6084/m9.figshare.6752591
title: Market Data INDICIES(1).xlsx

description: A List of top 30 Listed companies on Nigeria Stock Exchange as at April 2018 with their Capitalization Value and Ranking. We also Include a computation of proportion of the NSE controlled by the NSE 30 Index by dividing the total Market Capitalization for the NSE 30 Index by total market Capitalization for the whole NSE. In addition we compute the the ratio of Non-Financial services companies and Financial services companies as a percentage the whole value of NSE Market Capitalization
DOI: 10.6084/m9.figshare.6752549
title: When does economic model type become a decisive factor in health technology appraisals? Learning from the expanding treatment options for relapsing–remitting multiple sclerosis

description: <b>Objectives:</b> Specific economic model types often become <i>de facto</i> standard for health technology appraisal over time. Markov and discrete event simulation (DES) models were compared to investigate the impact of innovative modeling on the cost-effectiveness of disease-modifying therapies (DMTs) in relapsing–remitting multiple sclerosis (RRMS). Fingolimod was compared to dimethyl fumarate (DMF; in highly active [HA] RRMS), alemtuzumab (in HA RRMS) and natalizumab (in rapidly evolving severe RRMS). Comparator DMTs were chosen to reflect different dosing regimens. <b>Materials and methods:</b> Markov and DES models used have been published previously. Inputs were aligned in all relevant respects, with differences in the modeling of event-triggered attributes, such as relapse-related retreatment, which is inherently difficult with a memoryless Markov approach. Outcomes were compared, with and without different attributes. <b>Results:</b> All results used list prices. For fingolimod and DMF, incremental cost-effectiveness ratios (ICERs) were comparable (Markov: £4206/quality-adjusted life year [QALY] gained versus DES: £3910/QALY gained). Deviations were observed when long-term adverse events (AEs) were incorporated in the DES (Markov: £25,412 saved/QALY lost, versus DES: £34,209 saved/QALY lost, fingolimod versus natalizumab; higher ICERs indicate greater cost-effectiveness). For fingolimod versus alemtuzumab, when relapse-triggered retreatment was included in the DES, large cost differences were observed (difference between incremental cost is £35,410 and QALY is 0.10). <b>Limitations:</b> UK payer perspective, therefore societal approach was not considered. Resource utilization and utilities for both models were not derived from the subpopulations; as the focus is on model type, input limitations that apply to both models are less relevant. <b>Conclusions:</b> Whilst no model can fully represent a disease, a DES allows an opportunity to include features excluded in a Markov structure. A DES may be more suitable for modeling in RRMS for health technology assessment purposes given the complexity of some DMTs. This analysis highlights the capabilities of different model structures to model event-triggered attributes.
DOI: 10.6084/m9.figshare.6752549.v1
title: When does economic model type become a decisive factor in health technology appraisals? Learning from the expanding treatment options for relapsing–remitting multiple sclerosis

description: <b>Objectives:</b> Specific economic model types often become <i>de facto</i> standard for health technology appraisal over time. Markov and discrete event simulation (DES) models were compared to investigate the impact of innovative modeling on the cost-effectiveness of disease-modifying therapies (DMTs) in relapsing–remitting multiple sclerosis (RRMS). Fingolimod was compared to dimethyl fumarate (DMF; in highly active [HA] RRMS), alemtuzumab (in HA RRMS) and natalizumab (in rapidly evolving severe RRMS). Comparator DMTs were chosen to reflect different dosing regimens. <b>Materials and methods:</b> Markov and DES models used have been published previously. Inputs were aligned in all relevant respects, with differences in the modeling of event-triggered attributes, such as relapse-related retreatment, which is inherently difficult with a memoryless Markov approach. Outcomes were compared, with and without different attributes. <b>Results:</b> All results used list prices. For fingolimod and DMF, incremental cost-effectiveness ratios (ICERs) were comparable (Markov: £4206/quality-adjusted life year [QALY] gained versus DES: £3910/QALY gained). Deviations were observed when long-term adverse events (AEs) were incorporated in the DES (Markov: £25,412 saved/QALY lost, versus DES: £34,209 saved/QALY lost, fingolimod versus natalizumab; higher ICERs indicate greater cost-effectiveness). For fingolimod versus alemtuzumab, when relapse-triggered retreatment was included in the DES, large cost differences were observed (difference between incremental cost is £35,410 and QALY is 0.10). <b>Limitations:</b> UK payer perspective, therefore societal approach was not considered. Resource utilization and utilities for both models were not derived from the subpopulations; as the focus is on model type, input limitations that apply to both models are less relevant. <b>Conclusions:</b> Whilst no model can fully represent a disease, a DES allows an opportunity to include features excluded in a Markov structure. A DES may be more suitable for modeling in RRMS for health technology assessment purposes given the complexity of some DMTs. This analysis highlights the capabilities of different model structures to model event-triggered attributes.
DOI: 10.6084/m9.figshare.6744224
title: ASXL3, p.R1004Efs*21 - Sanger sequencing verification of NGS finding in proband and her parents

description: The DNA samples were processed by PCR and termination reaction for Sanger sequencing. The PCR were performed using PCR kit by Promega. Termination reactions were performed using BigDye v3.1 termination kit (ThermoFischer Scientific). DNA primers were designed using online tools Primer3, Primer Blast, UCSC In-Silico PCR (5’-CAGAGCAACACAGCTTTGGA-3‘ as forward primer and 5‘-GGAGACATTTCCAGGCCCTAT-3 as reverse primer).Before any analyses, the proband's parents signed the informed consent. The analyses were performed as laboratory tests at the Department of Medical Genetics, University Hospital Brno (Czech Republic).
DOI: 10.6084/m9.figshare.6744224.v1
title: ASXL3, p.R1004Efs*21 - Sanger sequencing verification of NGS finding in proband and her parents

description: The DNA samples were processed by PCR and termination reaction for Sanger sequencing. The PCR were performed using PCR kit by Promega. Termination reactions were performed using BigDye v3.1 termination kit (ThermoFischer Scientific). DNA primers were designed using online tools Primer3, Primer Blast, UCSC In-Silico PCR (5’-CAGAGCAACACAGCTTTGGA-3‘ as forward primer and 5‘-GGAGACATTTCCAGGCCCTAT-3 as reverse primer).Before any analyses, the proband's parents signed the informed consent. The analyses were performed as laboratory tests at the Department of Medical Genetics, University Hospital Brno (Czech Republic).
DOI: 10.6084/m9.figshare.6744206
title: Raman spectroscopic techniques to detect ovarian cancer biomarkers in blood plasma

description: Raw and pre-processed spectra after spontaneous Raman and surface-enhanced Raman spectroscopy (SERS) on blood plasma samples.
DOI: 10.6084/m9.figshare.6744023
title: Zone of Inhibition and Gram Staining Test: The spread of antibiotic resistant bacteria due to the use of antibacterial hand soaps

description: The information below each table describes the context for the data collected. Data presented in "The spread of antibiotic-resistant bacteria due to the use of antibacterial hand soaps"
DOI: 10.6084/m9.figshare.6744023.v1
title: Zone of Inhibition and Gram Staining Test: The spread of antibiotic resistant bacteria due to the use of antibacterial hand soaps

description: The information below each table describes the context for the data collected.
DOI: 10.6084/m9.figshare.6744023.v3
title: Zone of Inhibition and Gram Staining Test: The spread of antibiotic resistant bacteria due to the use of antibacterial hand soaps

description: The information below each table describes the context for the data collected. Data presented in "The spread of antibiotic-resistant bacteria due to the use of antibacterial hand soaps"
DOI: 10.6084/m9.figshare.6744023.v2
title: Zone of Inhibition and Gram Staining Test: The spread of antibiotic resistant bacteria due to the use of antibacterial hand soaps

description: The information below each table describes the context for the data collected.
DOI: 10.6084/m9.figshare.6743798
title: Dataset and R-script for the analysis of temporal yield stability

description: One of the primary challenges of our time is to enhance global food production and security. Most assessments in agricultural systems focus on plant yield. Yet, these analyses neglect temporal yield stability, or the variability and reliability of production across years. Here we perform a meta-analysis to assess temporal yield stability of three major cropping systems: organic agriculture and conservation agriculture (no-tillage) vs. conventional agriculture, comparing 193 studies based on 2896 comparisons. Organic agriculture has, per unit yield, a<br>significantly lower temporal stability (−15%) compared to conventional agriculture. Thus, although organic farming promotes biodiversity and is generally more environmentally<br>friendly, future efforts should focus on reducing its yield variability. Our analysis further indicates that the use of green manure and enhanced fertilisation can reduce the yield stability gap between organic and conventional agriculture. The temporal stability (−3%) of no-tillage does not differ significantly from those of conventional tillage indicating that a transition to no-tillage does not affect yield stability.<br>
DOI: 10.6084/m9.figshare.12890666
title: Evaluation of B73xPT BC1S5

description: Phenotypic data:Evaluation 97 of B73 x Palomero Toluqueño BC1S5 families (B73 as recurrent parent), their parentals and other genotypes used as checks in lowland (Valle de Balderas, PV, 165 m.a.s.l.) and highland (Metepec, MT, 2600 m.a.s.l.) environments, collected from 2015 to 2019. Linear mixed effects models were fitted using the ‘lme4’ package in R for each phenotypic trait. The overall mean and location were included as fixed effects, whereas the effect of year, genotype, genotype by location interaction, and blocks nested within location were included as random effects. The ‘ranef’ function in the ‘lme4’ function was used to extract Best Linear Unbiased Prediction (BLUP) values for both genotype and genotype by location interaction terms. Fitted values for genotypes were calculated as the grand mean plus associated BLUP values for each phenotypic trait, and fitted values for genotypes in two locations were calculated as the sum of location mean, BLUP values for each genotype, and BLUP values for the genotype by location interaction. <br>Genotype data and genetic map:Genotypic data and genetic map for 97 BC1S5 B73 x Palomero Toluqueño families. The genotyping was made with DArT-Seq; and the SNPs were curated with TASSEL5 and r-qtl. The genetic map distance was estimated with ASMAP.<br>
DOI: 10.6084/m9.figshare.12890666.v1
title: Evaluation of B73xPT BC1S5

description: Phenotypic data:Evaluation 97 of B73 x Palomero Toluqueño BC1S5 families (B73 as recurrent parent), their parentals and other genotypes used as checks in lowland (Valle de Balderas, PV, 165 m.a.s.l.) and highland (Metepec, MT, 2600 m.a.s.l.) environments, collected from 2015 to 2019. Linear mixed effects models were fitted using the ‘lme4’ package in R for each phenotypic trait. The overall mean and location were included as fixed effects, whereas the effect of year, genotype, genotype by location interaction, and blocks nested within location were included as random effects. The ‘ranef’ function in the ‘lme4’ function was used to extract Best Linear Unbiased Prediction (BLUP) values for both genotype and genotype by location interaction terms. Fitted values for genotypes were calculated as the grand mean plus associated BLUP values for each phenotypic trait, and fitted values for genotypes in two locations were calculated as the sum of location mean, BLUP values for each genotype, and BLUP values for the genotype by location interaction. <br>Genotype data and genetic map:Genotypic data and genetic map for 97 BC1S5 B73 x Palomero Toluqueño families. The genotyping was made with DArT-Seq; and the SNPs were curated with TASSEL5 and r-qtl. The genetic map distance was estimated with ASMAP.<br>
DOI: 10.6084/m9.figshare.6743798.v1
title: Dataset and R-script for the analysis of temporal yield stability

description: One of the primary challenges of our time is to enhance global food production and security. Most assessments in agricultural systems focus on plant yield. Yet, these analyses neglect temporal yield stability, or the variability and reliability of production across years. Here we perform a meta-analysis to assess temporal yield stability of three major cropping systems: organic agriculture and conservation agriculture (no-tillage) vs. conventional agriculture, comparing 193 studies based on 2896 comparisons. Organic agriculture has, per unit yield, a<br>significantly lower temporal stability (−15%) compared to conventional agriculture. Thus, although organic farming promotes biodiversity and is generally more environmentally<br>friendly, future efforts should focus on reducing its yield variability. Our analysis further indicates that the use of green manure and enhanced fertilisation can reduce the yield stability gap between organic and conventional agriculture. The temporal stability (−3%) of no-tillage does not differ significantly from those of conventional tillage indicating that a transition to no-tillage does not affect yield stability.<br>
DOI: 10.6084/m9.figshare.6743717.v1
title: SERIES EXPANSION FOR SHEAR STRESS IN LARGE-AMPLITUDE OSCILLATORY SHEAR FLOW FROM OLDROYD 8-CONSTANT FRAMEWORK: SUPPLEMENTARY MATERIAL

description: In this supplementary material, we show how we arrive at the starting eqaution before grouping and rearanging it into our main result . We begin with the exact solution for shear stress response for any special cases of the Oldroyd 8-constant framework, Eqs. (65) through (71) of [Physics of fluid 29, 043101 (2017)] in large-amplitude oscillatory shear flow (LAOS). We then expand the exact solution in Taylor series about Wi=0 (in even powers up to Wi^16) to get the starting eqaution. <br>
DOI: 10.6084/m9.figshare.6743654
title: SI for Improving Solvation Energy Predictions Using The SMD Solvation Method and Semiempirical Electronic Structure Methods

description: Table S5 from the paper
DOI: 10.6084/m9.figshare.6743579
title: Applications of Complex Network Analysis in Electric Power Systems

description: This paper provides a review of the research conducted on complex network analysis (CNA) in electric power systems. Moreover, a new approach is presented to find optimal locations for microgrids (MGs) in electric distribution systems (EDS) utilizing complex network analysis. The optimal placement in this paper points to the location that will result in enhanced grid resilience, reduced power losses and line loading, better voltage stability, and a supply to critical loads during a blackout. The criteria used to point out the optimal placement of the MGs were predicated on the centrality analysis selected from the complex network theory, the center of mass (COM) concept from physics, and the recently developed controlled delivery grid (CDG) model. An IEEE 30 bus network was utilized as a case study. Results using MATLAB (MathWorks, Inc., Nattick, MA, USA) and PowerWorld (PowerWorld Corporation, Champaign, IL, USA) demonstrate the usefulness of the proposed approach for MGs placement.
DOI: 10.6084/m9.figshare.6743654.v1
title: SI for Improving Solvation Energy Predictions Using The SMD Solvation Method and Semiempirical Electronic Structure Methods

description: Table S5 from the paper