cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ua6d3r
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lunda cirrhata (Pallas, 1769)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035611-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3642491_d4.v1
title: Additional file 3: Table S2. of Comprehensive analysis of promoter-proximal RNA polymerase II pausing across mammalian cell types

description: GO biological process enrichment analysis for the top and bottom 25Â % of genes by PI for each cell type. (XLSX 23028 kb)
DOI: 10.6084/m9.figshare.c.3642491_d3.v1
title: Additional file 4: Table S3. of Comprehensive analysis of promoter-proximal RNA polymerase II pausing across mammalian cell types

description: List of primers used in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3642491_d1.v1
title: Additional file 2: Table S1. of Comprehensive analysis of promoter-proximal RNA polymerase II pausing across mammalian cell types

description: Datasets used in this study. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3642455_d1.v1
title: MOESM1 of 3C-digital PCR for quantification of chromatin interactions

description: Additional file 1: Table S1. Table of sequences of the primers and TaqMan probes used for dPCR.
DOI: 10.6084/m9.figshare.c.3642422_d2.v1
title: Additional file 2: of Draft genomic sequence of a chromate- and sulfate-reducing Alishewanella strain with the ability to bioremediate Cr and Cd contamination

description: Table S1. Putative proteins involved in sulfate and chromate reduction. Table S2. Putative proteins involved in heavy metal resistance. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3594560_d21.v1
title: IDs for the ID converter

description: The columns respectively represent gene
symbol, transcript symbol, ensembl gene id and ensembl transcript id.
DOI: 10.6084/m9.figshare.c.3594560_d20.v1
title: Differentially expressed genes between grade III and grade IV

description: The columns respectively represent gene symbol, mean value of expression level in grade III, mean value of expression level in grade IV, t value, fold change, p value, adjusted p value (Benjamini & Hochberg).
DOI: 10.6084/m9.figshare.c.3594560_d21
title: IDs for the ID converter

description: The columns respectively represent gene
symbol, transcript symbol, ensembl gene id and ensembl transcript id.
DOI: 10.6084/m9.figshare.c.3594560_d20
title: Differentially expressed genes between grade III and grade IV

description: The columns respectively represent gene symbol, mean value of expression level in grade III, mean value of expression level in grade IV, t value, fold change, p value, adjusted p value (Benjamini & Hochberg).
DOI: 10.6084/m9.figshare.c.3594560_d19.v1
title: Differentially expressed genes between grade II and grade IV

description: The columns respectively represent gene symbol, mean value of expression level in grade II, mean value of expression level in grade IV, t value, fold change, p value, adjusted p value (Benjamini & Hochberg).
DOI: 10.6084/m9.figshare.c.3594560_d19
title: Differentially expressed genes between grade II and grade IV

description: The columns respectively represent gene symbol, mean value of expression level in grade II, mean value of expression level in grade IV, t value, fold change, p value, adjusted p value (Benjamini & Hochberg).
DOI: 10.6084/m9.figshare.c.3642296_d3.v1
title: Additional file 5: Table S4. of Genome-wide Association Study (GWAS) of mesocotyl elongation based on re-sequencing approach in rice

description: Annotation of candidate genes anchored by associated SNPs. (XLSX 34 kb)
DOI: 10.15468/dl.be5p9a
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Decapterus tabl Berry, 1968",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 38 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035612-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3642242_d1.v1
title: Additional file 2 of SePIA: RNA and small RNA sequence processing, integration, and analysis

description: SePIA workflow scripts and files. A zip file containing essential workflow scripts and files, including full sample information for the case study. Scripts are configured to run in Docker and to reference a mount point called SePIA_external. See the README for instructions. (RAR 235 kb)
DOI: 10.6084/m9.figshare.c.3642206_d1.v1
title: Additional file 1: of Identification of sex-associated network patterns in Vaccine-Adverse Event Association Network in VAERS

description: Network file containing all the networks presented in TableÂ  1 . (CYS 13422 kb)
DOI: 10.5517/ccdc.csd.cc2jf9w5
title: CCDC 2336497: Experimental Crystal Structure Determination

description: Related Article: Meng-Meng Zheng, Liu Cai, Tiancheng Ma, Hao-Dong Tan, Xiaoyu Lai, Jiajia Dong, Xiao-Song Xue |2024|Nat. Synth.|3|1507|doi:10.1038/s44160-024-00633-2
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.c.3642095_d1.v1
title: Additional file 1: of An efficient method for protein function annotation based on multilayer protein networks

description: Supplementary Data are available, including Complexes.txt: The CYC2008 dataset, which consists of 408 protein complexes involving 1492 proteins in the yeast PPI network. DIP141001.txt: The DIP dataset, updated to Oct.1, 2014, consists of 5017 proteins and 23115 interactions among the proteins. Domain.txt: The domain data derived from Pfam database, including 1107 different types of domains among 3056 proteins. FP-MPN.exe: The FP-MPN algorithm. FPMPN.txt: The predicted results by FP-MPN. GO_C.txt, GO_F.txt and GO_P.txt: Represents cellular component (CC), molecular function (MF) and biological process (BP), respectively. (ZIP 437 kb)
DOI: 10.6084/m9.figshare.c.3642056_d1.v1
title: Additional file 1 of Principal component gene set enrichment (PCGSE)

description: Supplementary figures for simulation and cell cycle examples. (PDF 698 kb)
DOI: 10.6084/m9.figshare.c.3642014_d4.v1
title: MOESM2 of Distinct functional enrichment of transcriptional signatures in pigs with high and low IFN-gamma responses after vaccination with a porcine reproductive and respiratory syndrome virus (PRRSV)

description: Additional file 2. Validation of the microarray data using real time qPCR. A subset of 9 regulated transcripts was reassessed using real-time qPCR. Data were used to run a regression analysis between the microarray and the real time qPCR experiment and generate the correlation coefficients R2.
DOI: 10.6084/m9.figshare.c.3641993_d16.v1
title: Additional file 5: Table S3. of Genome-wide expression profiles of Pyropia haitanensis in response to osmotic stress by using deep sequencing technology

description: (A) The comparison of expressed gene lists between MWL and CON. (B) Differentially expressed genes between MWL and CON. Readcount: transcript abundances for each gene. Pval: P value. Padj: adjusted P-value. Adjusted P-value of
DOI: 10.6084/m9.figshare.c.3641993_d14.v1
title: Additional file 12: Table S10. of Genome-wide expression profiles of Pyropia haitanensis in response to osmotic stress by using deep sequencing technology

description: (A) GO enrichment analysis of the upregulated genes in REH compared to CON. (B) GO enrichment analysis of the downregulated genes in REH compared to CON. (XLSX 334Â kb)
DOI: 10.6084/m9.figshare.c.3641993_d13.v1
title: Additional file 6: Table S4. of Genome-wide expression profiles of Pyropia haitanensis in response to osmotic stress by using deep sequencing technology

description: (A) The comparison of expressed gene lists between SWL and CON. (B) Differentially expressed genes between SWL and CON. Readcount: transcript abundances for each gene. Pval: P value. Padj: adjusted P-value. Adjusted P-value of
DOI: 10.6084/m9.figshare.c.3641993_d11.v1
title: Additional file 8: Table S6. of Genome-wide expression profiles of Pyropia haitanensis in response to osmotic stress by using deep sequencing technology

description: (A) GO enrichment analysis of the upregulated genes in SWL compared to CON. (B) GO enrichment analysis of the downregulated genes in SWL compared to CON. (XLSX 429Â kb)
DOI: 10.6084/m9.figshare.c.3641993_d9.v1
title: Additional file 7: Table S5. of Genome-wide expression profiles of Pyropia haitanensis in response to osmotic stress by using deep sequencing technology

description: (A) GO enrichment analysis of the upregulated genes in MWL compared to CON. (B) GO enrichment analysis of the downregulated genes in MWL compared to CON. (XLSX 436Â kb)
DOI: 10.6084/m9.figshare.c.3641993_d8.v1
title: Additional file 11: Table S9. of Genome-wide expression profiles of Pyropia haitanensis in response to osmotic stress by using deep sequencing technology

description: (A) The comparison of expressed gene lists between REH and CON. (B) Differentially expressed genes between REH and CON. Readcount: transcript abundances for each gene. Pval: P value. Padj: adjusted P-value. Adjusted P-value of
DOI: 10.6084/m9.figshare.c.3641993_d5.v1
title: Additional file 10: Table S8. of Genome-wide expression profiles of Pyropia haitanensis in response to osmotic stress by using deep sequencing technology

description: KEGG pathway enrichment analysis of the differentially expressed genes in SWL compared to CON. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.c.3641993_d6.v1
title: Additional file 9: Table S7. of Genome-wide expression profiles of Pyropia haitanensis in response to osmotic stress by using deep sequencing technology

description: (A) KEGG pathway enrichment analysis of the upregulated genes in MWL compared to CON. (B) KEGG pathway enrichment analysis of the downregulated genes in MWL compared to CON. (XLSX 33Â kb)
DOI: 10.15468/dl.r4bzwt
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Decapterus russelli (Rüppell, 1830)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 52 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035613-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3641885_d11.v1
title: Additional file 2: of Achieving high-sensitivity for clinical applications using augmented exome sequencing

description: ACE target file, defining regions of the genome targeted by the ACE assay used in this study. Chromosomal position information is based on mapping to GRCh37. (XLSX 5275Â kb)
DOI: 10.6084/m9.figshare.c.3641885_d7.v1
title: Additional file 9: of Achieving high-sensitivity for clinical applications using augmented exome sequencing

description: Common Target File representing regions common in ACE, SS, SSCR, NX, NG (that is, the intersection of platform specific target files), mapped to GRCh37. (XLSX 2666Â kb)
DOI: 10.6084/m9.figshare.c.3641885_d6.v1
title: Additional file 3: of Achieving high-sensitivity for clinical applications using augmented exome sequencing

description: Defines regions of the MIG using chromosomal position information and relevant gene identifiers; the reference transcript used for gene definitions; and the sources from which the genes were drawn. (XLSX 4964Â kb)
DOI: 10.6084/m9.figshare.c.3641885_d4.v1
title: Additional file 11: of Achieving high-sensitivity for clinical applications using augmented exome sequencing

description: Catalogue of exonic regions observed with &gt;70Â % high GC content. (XLSX 15115Â kb)
DOI: 10.6084/m9.figshare.c.3641885_d5.v1
title: Additional file 10: of Achieving high-sensitivity for clinical applications using augmented exome sequencing

description: Union Target File representing regions aggregated across ACE, SS, SSCR, NX, NG (that is, the union of platform specific target files) that contain loci associated with moderate and high-impact variants, mapped to GRCh37. (XLSX 181Â kb)
DOI: 10.6084/m9.figshare.c.3641882_d5.v1
title: Additional file 1: Table S1. of Concordance of copy number loss and down-regulation of tumor suppressor genes: a pan-cancer study

description: The 207 tumor suppress genes (TSGs) with frequent copy number losses (CNLs). (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3641882_d4.v1
title: Additional file 5: Table S5. of Concordance of copy number loss and down-regulation of tumor suppressor genes: a pan-cancer study

description: The CNV frequency of 81 tumor suppress genes (TSGs) with decreased gene expression potentially induced by copy number losses (CNLs) in multiple cancers. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3641882_d2.v1
title: Additional file 4: Table S4. of Concordance of copy number loss and down-regulation of tumor suppressor genes: a pan-cancer study

description: Functional enrichment results of 81 tumor suppress genes (TSGs) with decreased gene expression potentially induced by copy number losses (CNLs). (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3641882_d3.v1
title: Additional file 3: Table S3. of Concordance of copy number loss and down-regulation of tumor suppressor genes: a pan-cancer study

description: The 81 tumor suppress genes (TSGs) with decreased gene expression potentially induced by copy number losses (CNLs). (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3641882_d1.v1
title: Additional file 2: Table S2. of Concordance of copy number loss and down-regulation of tumor suppressor genes: a pan-cancer study

description: The enriched pathways and interactors for the 207 tumor suppress genes (TSGs) with frequent copy number loss (CNL). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3641855_d1.v1
title: Additional file 3: of A method for predicting protein complex in dynamic PPI networks

description: GSE3431 gene expression data. (TXT 4397 kb)
DOI: 10.6084/m9.figshare.c.3641855_d2.v1
title: Additional file 2: of A method for predicting protein complex in dynamic PPI networks

description: Krogan PPI data. (TXT 117 kb)
DOI: 10.6084/m9.figshare.c.3641819_d1.v1
title: Additional file 2: of Differential sialotranscriptomes of unfed and fed Rhipicephalus haemaphysaloides, with particular regard to differentially expressed genes of cysteine proteases

description: Details of all the proteins involved in the phylogenetic analysis of this paper. The text contained all the cysteine proteases form different species involved in this paper, including the proteases form R. haemaphysaloides(RH-) which were confirmed by the experiments. (TXT 65Â kb)
DOI: 10.6084/m9.figshare.c.3641819_d2.v1
title: Additional file 1: of Differential sialotranscriptomes of unfed and fed Rhipicephalus haemaphysaloides, with particular regard to differentially expressed genes of cysteine proteases

description: Differentially expressed genes database and GO terms database involved in this paper. (ZIP 4091Â kb)
DOI: 10.26179/hnhw-yf69
title: A topographic dataset for Heard Island from the Heard Island Mosaic (2017-2019 imagery)
DOI: 10.6084/m9.figshare.c.3641768_d2.v1
title: Additional file 1: of Informative gene selection and the direct classification of tumors based on relative simplicity

description: The binary-discriminative informative genes selected by RS method of nine datasets. (XLS 26 kb)
DOI: 10.5281/zenodo.14498435
title: Maryland Computer Assisted Mass Assessment Data

description: This data is available in the public domain
DOI: 10.5281/zenodo.14498436
title: Maryland Computer Assisted Mass Assessment Data

description: This data is available in the public domain
DOI: 10.6084/m9.figshare.c.3641633_d4.v1
title: Additional file 7: of MicroRNA-mRNA regulatory networking fine-tunes the porcine muscle fiber type, muscular mitochondrial respiratory and metabolic enzyme activities

description: Phenotype correlated miRNA-mRNA pairs after target prediction for Duroc and PiNN. (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.c.3641633_d2.v1
title: Additional file 1: of MicroRNA-mRNA regulatory networking fine-tunes the porcine muscle fiber type, muscular mitochondrial respiratory and metabolic enzyme activities

description: Definition and measurement of phenotypical traits. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3641633_d3.v1
title: Additional file 2: of MicroRNA-mRNA regulatory networking fine-tunes the porcine muscle fiber type, muscular mitochondrial respiratory and metabolic enzyme activities

description: The primer sequences in qRT-PCR. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3641633_d1.v1
title: Additional file 6: of MicroRNA-mRNA regulatory networking fine-tunes the porcine muscle fiber type, muscular mitochondrial respiratory and metabolic enzyme activities

description: Individual mRNAs and their correlated phenotypes for Duroc and PiNN. (XLSX 18Â kb)
DOI: 10.15468/dl.9rxwca
title: Occurrence Download

description: A dataset containing 705 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (NSW DPI Biosecurity Collections, Australian National Insect Collection, Queen Victoria Museum Art Gallery provider for OZCAM, Museums Victoria provider for OZCAM, Australian Museum provider for OZCAM, Tasmanian Museum and Art Gallery provider for OZCAM, Queensland Museum provider for OZCAM, NatureMapr, Waite Insect and Nematode Collection)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Anoplognathus suturalis Boisduval, 1835"
 ]
}

 The dataset includes 705 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035614-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3641597_d13.v1
title: MOESM10 of Identification of selective sweeps reveals divergent selection between Chinese Holstein and Simmental cattle populations

description: Additional file 10: Table S4. DAVID analyses on candidate genes.
DOI: 10.6084/m9.figshare.c.3641597_d11.v1
title: MOESM12 of Identification of selective sweeps reveals divergent selection between Chinese Holstein and Simmental cattle populations

description: Additional file 12: Table S5. Distribution of six components inferred by FlexMix analysis and number of SNPs in each component.
DOI: 10.6084/m9.figshare.c.3641597_d9.v1
title: MOESM5 of Identification of selective sweeps reveals divergent selection between Chinese Holstein and Simmental cattle populations

description: Additional file 5: Table S1. The top 5 genetically closest populations to Chinese Holstein and Simmental individuals in breed assignment analyses.
DOI: 10.15468/dl.t3tmub
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pristipomoides filamentosus (Valenciennes, 1830)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 40 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035615-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3641423_d2.v1
title: Additional file 1: of Prognostic value of phosphorylated Raf kinase inhibitory protein at serine 153 and its predictive effect on the clinical response to radiotherapy in nasopharyngeal carcinoma

description: Original data from 733 of the enrolled patients. (RAR 11 kb)
DOI: 10.6084/m9.figshare.c.3641423_d1.v1
title: Additional file 2: of Prognostic value of phosphorylated Raf kinase inhibitory protein at serine 153 and its predictive effect on the clinical response to radiotherapy in nasopharyngeal carcinoma

description: All sources of funding for the research reported. (RAR 31261 kb)
DOI: 10.6084/m9.figshare.c.3641366_d7.v1
title: MOESM2 of Integrative taxonomy of the Plain-backed Thrush (Zoothera mollissima) complex (Aves, Turdidae) reveals cryptic species, including a new species

description: Additional file 2: Data S1. Alignments of all sequences.
DOI: 10.6084/m9.figshare.c.3641366_d5.v1
title: MOESM4 of Integrative taxonomy of the Plain-backed Thrush (Zoothera mollissima) complex (Aves, Turdidae) reveals cryptic species, including a new species

description: Additional file 4: Data S3. Xml file for *BEAST analysis of all loci.
DOI: 10.6084/m9.figshare.c.3641366_d2.v1
title: MOESM3 of Integrative taxonomy of the Plain-backed Thrush (Zoothera mollissima) complex (Aves, Turdidae) reveals cryptic species, including a new species

description: Additional file 3: Data S2. Xml file for BEAST analysis of cytochrome b.
DOI: 10.6084/m9.figshare.c.3641357_d1.v1
title: MOESM1 of Quantitative metabolomics of the thermophilic methylotroph Bacillus methanolicus

description: Additional file 1 : List of metabolites with their abbreviations and InchI Code and InchI Key, raw data (i.e. analyte peak area and the corresponding concentration) and calibration coefficients.
DOI: 10.6084/m9.figshare.c.3641288_d3.v1
title: MOESM1 of Multifunctional cellulase catalysis targeted by fusion to different carbohydrate-binding modules

description: Additional file 1. Â Differential equations corresponding to the kinetic schemes shown in Fig. 7a (hexose products derived from cellulose) and in Fig. 7b (pentose products derived from hemicellulose).
DOI: 10.6084/m9.figshare.c.3641276_d5.v1
title: Additional file 4 of Identification of miRNA-mRNA regulatory modules by exploring collective group relationships

description: The significant pathways of top group pairs identified in the NCI60, BR and MCC datasets. (XLSX 21.9 kb)
DOI: 10.6084/m9.figshare.c.3641276_d4.v1
title: Additional file 2 of Identification of miRNA-mRNA regulatory modules by exploring collective group relationships

description: Three separate â  ground-truthâ   databases for the NCI60, BR and MCC datasets, respectively. (XLSX 227 kb)
DOI: 10.6084/m9.figshare.c.3641276_d3.v1
title: Additional file 3 of Identification of miRNA-mRNA regulatory modules by exploring collective group relationships

description: Experimentally confirmed interactions of the top COREs identified in the NCI60, BR and MCC datasets. (XLSX 33.5 kb)
DOI: 10.6084/m9.figshare.c.3641276_d2.v1
title: Additional file 1 of Identification of miRNA-mRNA regulatory modules by exploring collective group relationships

description: Differential expression profiles of miRNAs and mRNAs for the NCI60, BR and MCC datasets. (XLSX 2785 kb)
DOI: 10.6084/m9.figshare.c.3640946_d12.v1
title: Additional file 9: Figure S3. of Integrative transcriptome network analysis of iPSC-derived neurons from schizophrenia and schizoaffective disorder patients with 22q11.2 deletion

description: Is a figure with a bar plot presenting uncorrected expression values of 22q11.2 genes in control and SZ samples. Three genes flanking the deleted region at either side were also included. Asterisks (*) on the top of genes indicated significantly differential expression at the genome-wide scale (FDRâ
DOI: 10.6084/m9.figshare.c.3640946_d11.v1
title: Additional file 7: Table S4. of Integrative transcriptome network analysis of iPSC-derived neurons from schizophrenia and schizoaffective disorder patients with 22q11.2 deletion

description: Is a table listing the up-regulated genes in SZ. (XLS 212Â kb)