cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/svtmy3274p.1
title: Do interventions for mood improve inflammatory biomarkers in Inflammatory Bowel Disease?: A Systematic Review and Meta-Analysis

description: Meta-analysis of RCTs in adults with IBD that trialled interventions that included mood (depression, anxiety, stress, distress, or poor emotional well-being) as a primary or secondary outcome. All studies had to include an inflammatory biomarker, measured pre- and post-intervention. The Preferred Reporting Items for Systematic Reviews and Meta-analyses (PRISMA) guidelines were followed. Five electronic databases (in MEDLINE, EMBASE, PsycINFO, Global Health (through Ovid, 2022) and Web of Science (through Clarivate 2022), from 1947 to October 2023) were searched. Independent reviewers screened studies, extracted data, and assessed methodological quality. Data were pooled to estimate standardised mean differences (SMD) with 95% Confidence Intervals (CIs). A random-effects robust variance estimation accounted for studies measuring multiple biomarkers. Intervention type, mood as a primary or secondary outcome, effect on mood outcomes and IBD subtype were investigated as treatment effect moderators. Where there were sufficient biomarkers, individual meta-analyses were run (Pre-registration PROSPERO: CRD42023389401).

28 RCTs involving 1789 participants met inclusion criteria. Interventions demonstrated small, statistically significant effects on biomarkers (-0.35, 95%CI:-0.48, -0.22, p&lt;0.001) and medium effects on mood outcomes (-0.50, 95%CI:-0.73, -0.27, p&lt;0.001), without evidence of substantive heterogeneity or publication bias. Individual analyses showed small effects for improved faecal calprotectin (-0.19, 95%CI:-0.34, -0.03, p=0.018) and C-Reactive Protein (-0.29, 95%CI: -0.47, -0.10, p=0.002). Effect sizes were larger for psychological therapy interventions (compared with exercise or antidepressants) and when there was an effect (SMD≥0.2) on mood.
DOI: 10.17632/979tmymg6r.1
title: LINF_210020500

description: Small ribosomal subunit protein RACK1; Leishmania infantum (strain JPCM5)
DOI: 10.17632/29zmznx7pv.1
title: The alarmin IL-33 exacerbates pulmonary inflammation and immune dysfunction in SARS-CoV-2 infection. Yuejin Liang et al.

description: In this study, our hypothesis is that the alarmin IL-33 plays a pathogenic role in SARS-CoV-2 infection. In these raw data, we measured IL-33 levels in human nasal swabs and plasma (Fig. 1A). Next, we established an SARS-CoV-2 mouse model by using mouse-adapted virus. We analyzed the transcript levels of inflammatory markers in the lungs of infected mice on day 2 and 4 post-infection (Fig. 1B) as well as the cytokine/chemokine levels in mouse serum (Fig. 1C). In Fig. 1D, we assessed both transcript and protein levels of IL-33 in lung tissues of infected mice. In Fig. 2, mice were pretreated with rIL-33, followed by SARS-CoV-2 infection (Fig. 2A). Then, we evaluated bodyweight changes, viral burden, lung histology and inflammation (Fig. 2B-E). We further explored the role of IL-33 by using deficient mice. In Fig. 3, we infected WT and IL-33 KO mice, and evaluated bodyweight changes, viral burden, lung histology, immune cell infiltration and cytokine/chemokine in the sera (Fig. 3A-E). Finally, we performed bulk RNAseq assay for the lung tissues and compared the key signaling pathways and IPA network between WT and KO mice (Fig. 4). Uninfected mouse samples were also used as a control. The RNAseq data presented herein were deposited in NCBI’s Gene Expression Omnibus, accessible through GEO Series accession number GSE247370. Fig. S1 is the gating strategy of flow cytomtry. Fig. S2 shows the viral burden and inflammatory genes in delta strain-infected K18-hACE2 mice. Fig. S3 included the raw data of Bioplex for Fig. 1C. Fig. S4 shows the principal component axes and sample correlation heatmap of RNAseq data. Fig. 5 shows the hallmark analysis of RNAseq data. Rosalind platform was used to analyzed the RNAseq data for Fig. S4 and S5. Fig S6-S8 represent the IPA analysis of RNAseq data (KO vs. WT).
DOI: 10.17632/h4nbm64b7f.1
title: LINF_220013400

description: Zinc finger protein | ZC3H22; Leishmania infantum (strain JPCM5)
DOI: 10.17632/jn5nspjczs.1
title: LINF_220023100

description: Phosphoinositide-specific phospholipase C; Leishmania infantum (strain JPCM5)
DOI: 10.17632/pn45vhjjzf.1
title: LINF_220012000

description: Zinc finger protein | ZC3H19; Leishmania infantum (strain JPCM5)
DOI: 10.17632/2fs98x4mky.1
title: Farm infrastructure and stocking rate influence stream nutrient concentrations - dataset

description: Dataset used for correlation analysis and partial least squares regression to understand the influence of farm infrastructure density and stocking rate to stream nutrient concentration. Detailed description of each file is found in the summary_of_datasets.txt file.
DOI: 10.17632/ftdk3t64n7.1
title: TFAP2A-Induced M2 Macrophage Polarization Enhances Wound Healing in DFUs

description: With the increase in diabetes, diabetic foot ulcers (DFUs) have become a global health problem, significantly impacting the quality of life and healthcare systems. Among the various subtypes of immune cells, M2-polarized macrophages play a crucial role in tissue repair and resolution of inflammation. This study comprehensively investigates the functionality of the TFAP2A-LIFR-Hippo-YAP signaling axis in regulating the M2 polarization of macrophages and its critical role in the wound healing of DFUs, using single-cell transcriptomic sequencing and bulk transcriptomic sequencing. Through scRNA-seq analysis, nine major immune cell subtypes, with macrophages being the key cells, were identified in DFU samples. TFAP2A, a key gene that influences macrophage function in DFUs, upregulates LIFR expression and activates the Hippo-YAP signaling pathway, inducing M2 polarization of macrophages and improving endothelial dysfunction. Additionally, the TFAP2A-LIFR-Hippo-YAP signaling axis promotes wound healing in DFU mice by inducing M2 polarization of macrophages.
DOI: 10.17632/gk4nbc8vtf.1
title: Research Data-enhanced silicate weathering and arsenic release in reducing aquifers

description: Sediment and groundwater geochemistry
DOI: 10.17632/rszhm4xwvs.2
title: NWG Woody Plant Diversity

description: The data collected in the field work on documentation of Woody plant species at Northern Western Ghats (India) has been submitted here in this data set. A total of 12 sites over a 250 km stretch of NWG bordering Pune (11 sites) and Satara (1 site) districts, Maharashtra, India were chosen for this study. The sites mostly represented crest line forests (Eastern slopes) in the NWG. Ten to 20 quadrats (30 m×15 m) separated from each other by at least 100 m were laid down at each site. Individual woody plant species including trees, shrubs and lianas having GBH more than 10 cm were counted in each quadrat and documented. Data collection at these sites was done during March to May 2017 and during November 2017 to January 2018, when most of the herbaceous flora had withered.
DOI: 10.17632/vw42rzt2c2.1
title: Data from "Alternating binding and p97-mediated dissociation of SDS22 and I3 recycles active PP1 between holophosphatases"

description: Alternating binding and p97-mediated dissociation of SDS22 and I3 recycles active PP1 between holophosphatases
Anja F. Kueck, Johannes van den Boom, Sandra Koska, David Ron, Hemmo Meyer

Original data for the figures presented in Kueck et al. PNAS 2024.
All graphs and details regarding Western blot quantifications are collected in "Graphs Kueck et al.xlsx".
Raw scans for blots (including different exposure times) and gels are provided for each subfigure individually.
DOI: 10.17632/gbrjnh89zj.1
title: Complete dataset of the methane submodel, The Nutrition System for Dairy Cows (NS Dairy Cattle). Dairy Cattle Research Lab, Universidade Federal de Mato Grosso, Campus Sinop, Brazil

description: Complete dataset used to develop the methane submodel of The Nutrition System for Dairy Cows (NS Dairy Cattle). Dairy Cattle Research Laboratory, Universidade Federal de Mato Grosso, Campus Sinop, Brazil. 
Corresponding author: Dr. André Soares de Oliveira, e-mail: andre.oliveira@ufmt.br
DOI: 10.17632/4n48pfcycx.1
title: Survey data on divers and barriers to consumers' intention to adopt an SPSS offer - Brufonctionnel project

description: Background: 
SPSS as a solution to sustainability challenges in modern consumption.
Exploration of drivers and barriers (D&B) of SPSS adoption across three areas: mobility, clothing, and tooling.

Data Collection:
Collected as part of the Brufonctionnel project (ICHEC Brussels Management School & Gembloux Agro-Bio Tech, University of Liège. Financed by Innoviris. 2018-2021).
Conducted during the last semester of 2021 through a self-administered online survey among Brussels inhabitants. 
Survey software: Limesurvey.
Respondents randomly allocated a specific area of need and presented with a fictitious SPSS offer through a vignette.

Sample Size:
Initial observations: 1,192; After cleaning: 816.
Distribution: 255 (Mobility), 265 (Clothing), 296 (Tooling).

Methodology:
Multigroup Ordinary Least Squares (OLS) regression analyses used to test variations in D&B across areas of need.
Likert scale used for the dependent variable ("subscription intention") and for independent variables except the 3 attitudinal ("consumerism", "materialism", environemnatl concerns") drivers and barriers (normalized multi-item scale) and the 4 control variables (continuous "age", binary "gender", categorical "education" and "net monthly income").

Format:
Data: CSV format.
Code: Stata format.

Key Findings:
16 individual D&B empirically assessed, revealing variations among areas of need.
Identification of three distinct categories of D&B: generic, non-significant, and area-specific.
DOI: 10.17632/mgcftm5cp8.1
title: (supplementary data) Development of pH-sensitive Zerumbone-encapsulated Liposomes for Lung Fibrosis Via Inhalation Route

description: Context and Purpose: This dataset provides supplementary material for the manuscript titled "Development of pH-sensitive Zerumbone-encapsulated Liposomes for Lung Fibrosis Via Inhalation Route." The data support the findings and analyses presented in the main manuscript, offering additional details on experimental procedures and results.
DOI: 10.17632/4yb52tktfc.1
title: Going with the Flow: How local water users associations have shaped water resource management in Chile

description: The primary hypothesis of this research is that local collective water management initiatives can significantly influence national water policies and contribute to sustainable water management practices. Specifically, the study aims to examine the decision-making dynamics within local water associations in the Aconcagua and Copiapó basins in Chile and evaluate how these local practices impact national water governance.
The dataset includes detailed records from two distinct case studies of local water management in Chile: the Aconcagua basin committee and the Copiapó groundwater communities. The data encompasses meeting minutes, reports, and interviews, which collectively provide insights into the governance structures, decision-making processes, and the effectiveness of local water management strategies. Notable findings from the data analysis reveal both strengths and weaknesses in the decision-making dynamics of these local water associations, highlighting their role in promoting sustainable water management and influencing national policies.
For the Aconcagua Basin Committee analysis:
 * Data: Meeting minutes from January 2018 to November 2020.
 * Additional Data: A semi-structured interview with a key stakeholder.
For the Copiapó Groundwater Communities analysis:
 * Data: Reports from a public program aimed at organizing groundwater users.
 * Additional Data: A semi-structured interview with a program participant.
The data can be used to study the governance and operational dynamics of local water management systems in Chile. It has been analyzed under a qualitative perspective using the Combined IAD-SES framework. The insights gained from this research can contribute to the development of more effective and sustainable, water management strategies at both local and national levels.
DOI: 10.17632/npzgd7ngtw.1
title: LINF_240021300

description: UBA/TS-N domain containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/dw2cwjsc8d.1
title: Zinc supplementation decreased incidence of grade≥2 hand-foot skin reaction induced by regorafenib: a phase II clinical trial

description: Supplemental figure 1.
DOI: 10.15468/dl.xrstw6
title: Occurrence Download

description: A dataset containing 40755 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (South Africa, Lesotho, Eswatini)",
 "TaxonKey is one of (Lagonosticta rubricata (Lichtenstein, 1823))",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "OccurrenceStatus is Present",
 "DistanceFromCentroidInMeters is greater than or equal to 2000"
 ]
}

 The dataset includes 40755 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004517-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/hsdh9d24y6.1
title: Organic amendments promoted ecosystem multifunctionality by enhancing microbial cooperation and network complexity

description: Organic amendments promoted ecosystem multifunctionality by enhancing microbial cooperation and network complexity
DOI: 10.17632/jp4pvss5cn.1
title: The value of time in one-off and repeated setup

description: This data were collected in an experiment described in the paper "The value of time in one-off and repeated setup" by Renata Kosíková, Ondřej Krčál and Stephanie Peer. The main variables include Switch (1-20), which is the line of the MPL at which participants choose to wait and Treatment (O = One-off; R = Repeated). All the variables and are described in the attached replication code.
DOI: 10.17632/wkxnrfbzzc.1
title: Impact of disrupted cyclic stretch in intracranial aneurysms: insights from endothelial cell transcriptomic dataset.

description: Supplementary Table 1: Differentially expressed genes results of HUVECs exposed to physiological vs aneurysmal cyclic stretch
Supplementary Table 2: Gene set enrichment analysis of HUVECs exposed to physiological vs aneurysmal cyclic stretch
DOI: 10.17632/hcxvkfncgc.1
title: Count and species records of insects and spiders species from wetland sites in Aspromonte Mountain (Calabria region – South Italy)

description: The specific faunal surveyed was presented in datasets in order to understand the importance of the presence of insects and spiders many of them associated in inland aquatic environments of a Mediterranean mountain. The data obtained highlight a rich specific insects and spiders component often-in Habitat directive. The data will provide useful information to outline strategies for the conservation and the management of these sites already at risk by climate change. The collected data follow within the execution of the specific wetland area project funded by Aspromonte National Park “Progetto di studio e ricerca sulla biodiversità degli ambienti umidi del Parco Nazionale dell'Aspromonte“ (Programma operativo FESR Calabria 2014/2020 OT 6 Azione 6.5.A1 - Monitoraggio Sic Terrestri in Aree Protette, - Regione Calabria). The dataset includes 4.731 count and 473 species collected and identified with 400 insects, 1 millipedes, centipedes and 71 spiders.
DOI: 10.17632/wxvcdghbh2.1
title: LINF_120006600

description: leucine-rich repeat protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/rbnr9yr4yh.2
title: Survey on biodiversity conservation in the Strait of Sicily

description: This dataset presents raw data from a survey conducted through in-person interviews between November 2023 and January 2024, yielding 128 responses from 7 coastal locations along the Strait of Sicily. The aim of the survey was to assess confidence and awareness about the biodiversity conservation in the Strait of Sicily and the willingness to pay for habitat conservation in the SoS.
DOI: 10.17632/rbnr9yr4yh.1
title: Survey on biodiversity conservation in the Strait of Sicily

description: This dataset presents raw data from a survey conducted through in-person interviews between November 2023 and January 2024, yielding 128 responses from 7 coastal locations along the Strait of Sicily. The aim of the survey was to assess confidence and awareness about the biodiversity conservation in the Strait of Sicily and the willingness to pay for habitat conservation in the SoS.
DOI: 10.17632/3tmr47wjhf.1
title: LINF_120006500

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/cz7frtx4np.1
title: Molecular mechanism for Tn7-like transposon recruitment by a type I-B CRISPR effector

description: This Mendeley Dataset includes uncropped gels, Excel datasets for graphs, and raw mass spectrometry data for the following paper. 
Wang, S., Gabel, C., Siddique, R., Klose, T., and Chang, L. (2023). Molecular mechanism for Tn7-like transposon recruitment by a type I-B CRISPR effector. Cell. 10.1016/j.cell.2023.07.010.
DOI: 10.17632/cfwy3y76jb.1
title: Synthetic Parabolic Trajectories Dataset in Hexapod Robots

description: Parabolic trajectories constitute the primary motion of a robotic leg. Therefore, the data used to train models requires variations to the ideal (proposed) trajectories. Thus, it is essential to generate random sequences based on parabolic trajectories in each degree of freedom so that, collectively, they create a random three-dimensional step. The database comprises three classes of planar movements—two parabolic and one sigmoidal—representing one degree of freedom. Its structure consists of 200 timesteps, indicating the discretization of the continuous trajectory range into 1000 uniformly distributed trajectories across the three classes of movements in each degree of freedom.
DOI: 10.17632/47zptxbnd4.1
title: Reaction calorimetry and structural crystal properties of non-ideal binary rhabdophane solid solutions (Ce1-xREExPO4·nH2O)

description: Room temperature reaction calorimetric experiments that were used to measure the enthalpy of precipitation of rhabdophane (Ce1-xREExPO4·nH2O; REE= La, Pr, Nd, Sm, Eu, and Gd). The solids were characterized using X-ray diffraction, scanning electron microscopy, Raman spectroscopy, and the role of water in the rhabdophane structure was further determined using thermogravimetric analysis coupled with differential scanning calorimetry. Data are from the ODCM Laboratory, New Mexico Bureau of Geology and Mineral Resources, New Mexico Tech.
DOI: 10.17632/m78j7ctwhn.1
title: Pharma-safe Index Dataset

description: Pharma-safe Index Dataset is a dataset that contains information on drugs sold in Indonesia. The dataset consists of several drug data information in Bahasa Indonesia whose data structure has been adjusted so that it is easy to reuse. The information contained in this dataset is general drug data, usage rules, dosage, side effects, price, drug interactions, period of use, composition, contraindications. Data available in CSV and JSON format.
DOI: 10.17632/392phdsm2s.3
title: Oligostilbenoids from Vatica lowii King emend. Sym. (Dipterocarpaceae) and their chemotaxonomic significance

description: Supplementary data for Oligostilbenoids from Vatica lowii King emend. Sym. (Dipterocarpaceae) and their chemotaxonomic significance
DOI: 10.17632/fgchc2wdzj.1
title: LDHU3_14.1580

description: Enolase | ENOL; Leishmania donovani (HU3 strain)
DOI: 10.15468/dl.cp9k3x
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-35.019 19,-34.019 19,-34.019 20,-35.019 20,-35.019 19))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004519-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/p6b9s6zfy5.1
title: LINF_120009600

description: UTP23; Leishmania infantum (strain JPCM5)
DOI: 10.17632/cthrnsmm9j.1
title: LDHU3_14.1560

description: Tub family protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/3866tj3w8v.1
title: Geographically extensive spectral library of peatland vegetation from 13 hemiboreal, boreal, sub-Arctic and Arctic peatland sites

description: This dataset includes 446 hemispherical-conical reflectance factors at wavelengths from 350 to 2500 nm measured on 13 hemiboreal, boreal, sub-Arctic and Arctic peatland sites in Finland and Estonia. The measurements were made during growing seasons of 2022 and 2023, on 1 m × 1 m plots under diffuse illumination conditions. The dataset includes also the site ID, country of the measurement, name of the peatland site, date of the measurement, coordinates of the plot, Finnish peatland type for the measurements done in Finland and tree-covert type for the measurements done in Estonia, basal area of the dead and alive standing trees by species, and vegetation fractional cover of the plot, as well as the quality class of the SWIR data on wavelengths 2025–2310 nm. For more elaborate description of the contents, see Data_description.pdf. Furthermore, a detailed description of the data acquisition and preprocessing is provided in Salko et al. [1].

The spectra are reported in two versions: as raw data (“_raw”) and as smoothed with Savitzky-Golay smoothing (_smoothed). The Savitzky-Golay smoothing was applied using a second order polynomial and a window size of 15 nm in the 350 to 1000 nm region, 39 nm in the 1001 to 2000 nm region and 75 nm in the 2001–2500 nm region. The atmospheric water absorption regions with high levels of noise are present at 1330–1549 nm, 1761–2024 nm, and 2311–2500 nm. In the _raw version, there reflectance factors on the water absorption regions are included in the data, and in the _smoothed version, they are omitted. 


If you use this dataset, please cite [1] and [2].

[1] Salko, S.-S., Hovi, A., Burdun, I., Juola, J., Rautiainen, M. (2024). Hyperspectral characterization of vegetation in hemiboreal, boreal and Arctic peatlands using a geographically extensive field dataset. Ecological Informatics, DOI: 10.1016/j.ecoinf.2024.102772
[2] Salko, S.-S., Hovi, A., Burdun, I., Juola, J., Rautiainen, M. (2024). Geographically extensive spectral library of peatland vegetation from 13 hemiboreal, boreal, sub-Arctic and Arctic peatland sites. Mendeley Data, V1, DOI: 10.17632/3866tj3w8v.1
DOI: 10.17632/ms5bsr3dkd.1
title: LINF_120017725

description: methyltransferase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/4k3ygzrrmz.1
title: LDHU3_14.1610

description: Bifunctional NAD(P)H-hydrate repair enzyme; Leishmania donovani (HU3 strain)
DOI: 10.17632/wws5s8kkwc.1
title: LDHU3_14.1630

description: FCP1 homology domain-containing protein; Leishmania donovani (HU3 strain)