cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bumh3v
title: Occurrence Download

description: A dataset containing 12813 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The MOBIOS+: A FAIR (Findable, Accessible, Interoperable, and Reusable) Database for Mindanao's Terrestrial Biodiversity"
 ]
}

 The dataset includes 12813 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045537-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3mrfss
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "DatasetKey is Naturalis Biodiversity Center (NL) - Botany",
 "TaxonKey is Trichospermum Blume"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045539-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28078376
title: Dynamic Predictive Pattern of Non-fungible Tokens: Insight from Uncertainties, Geopolitical Risk, and Market Sentiments

description: This data comprises of the return series used in the estimations of the study with the above title
DOI: 10.15468/dl.vfyz9w
title: Occurrence Download

description: A dataset listing the 2080 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is The MOBIOS+: A FAIR (Findable, Accessible, Interoperable, and Reusable) Database for Mindanao's Terrestrial Biodiversity"
 ]
}

 The dataset's 2080 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045538-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14541522
title: allocareproctus_jordani_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.14541523
title: allocareproctus_jordani_decontaminated_FSCR.fasta.gz
DOI: 10.6084/m9.figshare.28078367
title: <b>Proteomic characterization of Clinical </b><b><i>Candida glabrata </i></b><b>isolates with varying degrees of virulence and resistance to Fluconazole</b>

description: This study aims to determine proteins responsible for resistance and virulence in <i>Candida glabrata</i> Lebanese hospital isolates. Four isolates (4, 8, 28, and 29) with varying degrees of resistance and virulence to fluconazole were subjected to proteomic analysis. Cell wall proteins of each isolate were extracted and analyzed using MALDI TOF TOF mass spectrometry to identify proteins responsible for virulence and resistance under exposure to fluconazole. Maldi-generated reports were searched in MASCOT and ProteinPilot search engines to identify protein hits. Unmatched sequences were then BLAST searched in candidagenome.org. The files attached here include the MALDI reports, MASCOT reports, ProteinPilot reports, and the list of proteins included in our customized <i>C. glabrata</i> database that was extracted from Uniprot.
DOI: 10.6084/m9.figshare.28078367.v1
title: <b>Proteomic characterization of Clinical </b><b><i>Candida glabrata </i></b><b>isolates with varying degrees of virulence and resistance to Fluconazole</b>

description: This study aims to determine proteins responsible for resistance and virulence in <i>Candida glabrata</i> Lebanese hospital isolates. Four isolates (4, 8, 28, and 29) with varying degrees of resistance and virulence to fluconazole were subjected to proteomic analysis. Cell wall proteins of each isolate were extracted and analyzed using MALDI TOF TOF mass spectrometry to identify proteins responsible for virulence and resistance under exposure to fluconazole. Maldi-generated reports were searched in MASCOT and ProteinPilot search engines to identify protein hits. Unmatched sequences were then BLAST searched in candidagenome.org. The files attached here include the MALDI reports, MASCOT reports, ProteinPilot reports, and the list of proteins included in our customized <i>C. glabrata</i> database that was extracted from Uniprot.
DOI: 10.5281/zenodo.14531158
title: Enhanced Sampling of Protein Conformational Changes via True Reaction Coordinates from Energy Relaxation

description: The dataset contains RC-uncovered and natural reactive trajectories. Coordinates of water molecules are excluded to reduce data size. It also contains initial and final structures for all trajectories in PDB format.

 

Data Description

The data are provided as one .zip file. It can be unzipped by running unzip traj_data.zip

 

Trajectories are provided as .xtc files. Initial structures are provided as *-Initial.pdb, and final structures are provided as *-Final.pdb.

 

Two types of trajectories are provided, with RC-covered trajectories labeled as *RC-uncov* and natural reactive trajectories labeled as *NRT*.

 

The dataset includes trajectories for three systems, each labeled as follows:

DRV-bound HIV-PR is labeled as DRV*

MA/CA-bound HIV-PR is labeled as MA-CA*

PDZ domain is labeled as PDZ*

 

Moreover, force field files of the three systems are provided in the directories DRV_ff, MA-CA_ff, and PDZ_ff.

 

Custom Code

Custom code for generalized work functional approach and custom GROMACS code for generating RC-uncovered trajectories are provided on Code Ocean (https://codeocean.com/capsule/6873439/tree).
DOI: 10.5281/zenodo.14531159
title: Enhanced Sampling of Protein Conformational Changes via True Reaction Coordinates from Energy Relaxation

description: The dataset contains RC-uncovered and natural reactive trajectories. Coordinates of water molecules are excluded to reduce data size. It also contains initial and final structures for all trajectories in PDB format.

 

Data Description

The data are provided as one .zip file. It can be unzipped by running unzip traj_data.zip

 

Trajectories are provided as .xtc files. Initial structures are provided as *-Initial.pdb, and final structures are provided as *-Final.pdb.

 

Two types of trajectories are provided, with RC-covered trajectories labeled as *RC-uncov* and natural reactive trajectories labeled as *NRT*.

 

The dataset includes trajectories for three systems, each labeled as follows:

DRV-bound HIV-PR is labeled as DRV*

MA/CA-bound HIV-PR is labeled as MA-CA*

PDZ domain is labeled as PDZ*

 

Moreover, force field files of the three systems are provided in the directories DRV_ff, MA-CA_ff, and PDZ_ff.

 

Custom Code

Custom code for generalized work functional approach and custom GROMACS code for generating RC-uncovered trajectories are provided on Code Ocean (https://codeocean.com/capsule/6873439/tree).
DOI: 10.15468/dl.bjwkty
title: Occurrence Download

description: A dataset containing 2366 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus contorta var. murrayana (Balf.) Engelm."
 ]
}

 The dataset includes 2366 records from 140 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045540-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sfdkcy
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "StateProvince is Mato Grosso",
 "TaxonKey is Leptolobium elegans Vogel"
 ]
}

 The dataset includes 70 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045541-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8auuj2
title: Occurrence Download

description: A dataset containing 31529 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Magnoliaceae)",
 "Country is one of (United States of America, Canada, Mexico, Belize, Costa Rica, El Salvador, Guatemala, Honduras, Nicaragua, Panama, Argentina, Bolivia (Plurinational State of), Brazil, Chile, Colombia, Ecuador, Guyana, Paraguay, Peru, Suriname, Uruguay, Venezuela (Bolivarian Republic of), Antigua and Barbuda, Bahamas, Barbados, Cuba, Dominica, Dominican Republic, Grenada, Haiti, Jamaica, Saint Kitts and Nevis, Saint Lucia, Saint Vincent and the Grenadines, Trinidad and Tobago, Bermuda, Greenland, Puerto Rico, French Guiana)",
 "BasisOfRecord is one of (Specimen, Material citation)"
 ]
}

 The dataset includes 31529 records from 490 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045542-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14541532
title: Raw data for the
DOI: 10.5281/zenodo.14541533
title: Raw data for the
DOI: 10.15468/dl.qqudxt
title: Occurrence Download

description: A dataset containing 64326 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-8.63443 40.62393,-8.53088 40.62393,-8.53088 40.71554,-8.63443 40.71554,-8.63443 40.62393))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 64326 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045543-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8bc7w9
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "StateProvince is Mato Grosso",
 "TaxonKey is Mimosa caesalpiniifolia Benth."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045544-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nc4uhw
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "StateProvince is one of (Risaralda, Risaralda Department, Risaralda Dept., Quindio, Quindio Department, Quindio Dept., Caldas, Caldas Department, Caldas Dept., Caldas Dpt., Central Comombia)",
 "TaxonKey is Magnoliaceae"
 ]
}

 The dataset includes 89 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045545-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6a8xzv
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "StateProvince is Mato Grosso",
 "TaxonKey is Mouriri glazioviana Cogn."
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045546-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qmg4rv
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "StateProvince is Mato Grosso",
 "TaxonKey is Mouriri huberi Cogn."
 ]
}

 The dataset includes 7 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045547-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fwzm3r
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "StateProvince is Mato Grosso",
 "TaxonKey is Ocotea glomerata (Nees) Mez"
 ]
}

 The dataset includes 42 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045548-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y5s4u8
title: Occurrence Download

description: A dataset containing 817 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Speothos venaticus (Lund, 1842)"
 ]
}

 The dataset includes 817 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045549-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28078118
title: Acidification and hypoxia observations in the Changjiang Estuary in 2020

description: We conducted three replicate cruises from July to September 2020 along the same transects off the Changjiang Estuary to investigate dynamic changes of coastal acidification and hypoxia.
DOI: 10.6084/m9.figshare.28078118.v2
title: Acidification and hypoxia observations in the Changjiang Estuary in 2020

description: We conducted three replicate cruises from July to September 2020 along the same transects off the Changjiang Estuary to investigate dynamic changes of coastal acidification and hypoxia.
DOI: 10.6084/m9.figshare.28078118.v1
title: Hypoxia and hypoxia observations in the Changjiang Estuary in 2020

description: We conducted three replicate cruises from July to September 2020 along the same transects off the Changjiang Estuary to investigate dynamic changes of coastal acidification and hypoxia.
DOI: 10.25919/jsrq-hk02
title: Parkes observations for project P1281 semester 2024OCTS_08

description: The physical origin of fast radio bursts (FRBs) has been hotly debated over the past decade until the discovery of bright radio bursts from the Galactic magnetar in 2020. The discovery of galactic FRBs has demonstrated that at least some faint FRBs can originate from normal magnetars. So far, only two active FRB repeaters are confirmed to be associated with persistent radio sources, which are normally interpreted as magnetar wind nebulae by theorists. From the most recent observations with the FAST and Parkes telescopes, we observed a particular radio source, VT 1137-0337, and we found several suspicious short-duration single pulse candidates whose dispersion measurements were very close. Notably, the signal found in the Parkes UWL data has a typical pulse width of 1 ms and exhibits an apparent broadband feature. We strongly request continuing to monitor this source with the Parkes UWL receiver, aiming to detect a significant FRB and directly reveal the nature of the active FRB repeaters.
DOI: 10.25919/cqdb-m442
title: Parkes observations for project P1348 semester 2024OCTS_02

description: We have discovered 6 candidate eclipsing binary millisecond pulsar (BMSPs) systems via image-plane searches for steep-spectrum radio sources with periodic variability. The radio emission, short eclipse periods (&lt;1day), and Fermi association suggest they could be spider PSRs. Millisecond pulsations have recently been detected from a similarly identified candidate system. The discovery of millisecond pulsars (MSPs) in these systems would provide insights into the formation and evolution of spider PSRs. It would also improve predictions of the BMSP and MSP populations detectable by upcoming, highly sensitive image-plane surveys at low frequencies using precursors to, and eventually, the Square Kilometre Array (SKA) itself. Finally, 5 of our 6 candidates are also located in the Galactic bulge. If all such systems include MSPs, it would provide further compelling evidence that the Fermi GeV gamma-ray excess is coming from thousands of MSPs.
DOI: 10.25919/wbt9-c220
title: Parkes observations for project P1054 semester 2024OCTS_08

description: With this proposal we ask time to continue our timing follow-up campaign of pulsars discovered with the MeerKAT telescope. Thirtysix sources have been discovered in targeted observations of Fermi unidentified point sources, two in association with a Supernova Remnant, 14 in the Magellanic Clouds, 94 in Globular Clusters and 81 in a survey of the Galactic plane. A large fraction of the new discoveries are recycled pulsars (including at least one double neutron star system and several 'spider' binaries), or young pulsars. Timing observations have an essential role in exploiting the full potential of any pulsar discovery, allowing the precise measurement of rotational, astrometric and orbital parameters which, in turn, give us powerful tools to improve our understanding of the physics in extreme environments as well as of the population of neutron stars as a whole. The UWL receiver of the Parkes telescope is a sensitive, versatile instrument that is allowing us to successfully time these new sources, in the bright-end of TRAPUM discoveries.
DOI: 10.15468/dl.jrcx5t
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "StateProvince is Mato Grosso",
 "TaxonKey is Pachira amazonica (A.Robyns) W.S.Alverson"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045550-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/m8z0-xc92
title: Parkes observations for project P595 semester 2024OCTS_08

description: We propose to continue the PULSE@Parkes project in which high school students from Australia and around the World use the Parkes radio telescope in a remote observing model to observe and analyse pulsar data. The data from some PULSE@Parkes observations are used to support the space missions, other observations supplement the P456 Pulsar Timing Array project and the remainder were chosen in order to make a detailed analysis of pulsar timing irregularities and intermittency.
DOI: 10.25919/t54k-3s43
title: Parkes observations for project P1185 semester 2023APRS_33

description: Ultra-long period neutron stars (ULPNSs) are an emerging class of objects that have sparked interest and curiosity in the fast transient community. Along with standard magnetars, they have been theorised to be potential progenitors of the enigmatic fast radio bursts (FRBs). The MeerTRAP project at the MeerKAT radio telescope is uncovering several magnetar and ultra-long period neutron star candidates, an example of which is PSR J0901-4046 with a period of 76s. Continued long-term monitoring of PSR J0901-4046 has shown it to be potentially transitioning into radio quiescence. The proposed observations will enable us to continue to monitor and characterise the decline in flux density. We have also discovered two new candidates MTP0027 and MTP0068 with periods of ~10 seconds and ~5 seconds respectively. Both sources exhibit magnetar-like pulse morphology and have only been detected in one epoch with MeerKAT. We propose to continue monitoring these sources to re-detect pulses and study their spectro-temporal-polarimetric properties.
DOI: 10.25919/pj0t-9v84
title: Parkes observations for project P1328 semester 2024OCTS_10

description: Fast radio bursts are peculiar micro-millisecond duration transients, which have been seen to be extragalactic in origin. Since their discovery, a dichotomy has emerged in their population. Some FRBs have been seen to be repeating, while others have not been seen to be repeating. The repeating FRBs, such as FRB 20180301A, provide an unparalleled window into their circumburst environment due to their repeating nature, which can be used to constrain possible progenitor models and test underlying emission mechanisms. Additionally, FRB 20180301A has been seen to have interesting polarisation properties, such as a switch in the sign of RM, indicating a reversal in the magnetic field and a marked reduction in the linear polarisation fraction towards lower frequencies (depolarisation). The previous Parkes/Murriyang source follow-up has also revealed a temporal evolution in the dispersion measure (DM) of the source and tentative evidence for correlation in the DM and rotation measure (RM). The ultra-wideband low (UWL) receiver on Parkes/Murriyang is ideally suited to explore the wideband spectro-temporal and polarimetric behaviour of the source. We propose regular monitoring of FRB 20180301A using UWL to model the magnetic field evolution, study its circumburst media using depolarisation behaviour, and constrain any correlation of DM and RM.
DOI: 10.15468/dl.3py5j4
title: Occurrence Download

description: A dataset containing 10083 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus albicaulis Engelm."
 ]
}

 The dataset includes 10083 records from 141 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045551-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cw8m4m
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "StateProvince is Mato Grosso",
 "TaxonKey is Potalia amara Aubl."
 ]
}

 The dataset includes 14 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045552-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/796a-er79
title: Parkes observations for project P1328 semester 2024OCTS_11

description: Fast radio bursts are peculiar micro-millisecond duration transients, which have been seen to be extragalactic in origin. Since their discovery, a dichotomy has emerged in their population. Some FRBs have been seen to be repeating, while others have not been seen to be repeating. The repeating FRBs, such as FRB 20180301A, provide an unparalleled window into their circumburst environment due to their repeating nature, which can be used to constrain possible progenitor models and test underlying emission mechanisms. Additionally, FRB 20180301A has been seen to have interesting polarisation properties, such as a switch in the sign of RM, indicating a reversal in the magnetic field and a marked reduction in the linear polarisation fraction towards lower frequencies (depolarisation). The previous Parkes/Murriyang source follow-up has also revealed a temporal evolution in the dispersion measure (DM) of the source and tentative evidence for correlation in the DM and rotation measure (RM). The ultra-wideband low (UWL) receiver on Parkes/Murriyang is ideally suited to explore the wideband spectro-temporal and polarimetric behaviour of the source. We propose regular monitoring of FRB 20180301A using UWL to model the magnetic field evolution, study its circumburst media using depolarisation behaviour, and constrain any correlation of DM and RM.
DOI: 10.15468/dl.fzsv9a
title: Occurrence Download

description: A dataset containing 7769 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus flexilis E.James"
 ]
}

 The dataset includes 7769 records from 223 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045553-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.