cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3615698_d8
title: Additional file 2: Table S2. of Genome-wide identification and characterization of long non-coding RNAs in developmental skeletal muscle of fetal goat

description: List of lncRNAs identified in the goat skeletal muscle libraries. (XLSX 171 kb)
DOI: 10.6084/m9.figshare.c.3615698_d6
title: Additional file 11: of Genome-wide identification and characterization of long non-coding RNAs in developmental skeletal muscle of fetal goat

description: The transcript annotation information for the lncRNAs. (GTF 2080 kb)
DOI: 10.6084/m9.figshare.c.3615623_d20
title: Additional file 16: Table S6. of RNA-seq reveals differentially expressed genes of rice (Oryza sativa) spikelet in response to temperature interacting with nitrogen at meiosis stage

description: The summary of differentially expressed genes (DEGs) occurred simultaneously in different samples. (XLS 438 kb)
DOI: 10.6084/m9.figshare.c.3615698_d5
title: Additional file 8: Table S6. of Genome-wide identification and characterization of long non-coding RNAs in developmental skeletal muscle of fetal goat

description: Co-expression analysis between protein-coding genes and lncRNAs (Pearson’s correlation coefficients &gt; 0.95 and
DOI: 10.6084/m9.figshare.c.3615698_d4
title: Additional file 10: Table S8. of Genome-wide identification and characterization of long non-coding RNAs in developmental skeletal muscle of fetal goat

description: Primers used in the qPCR analysis. (XLSX 9 kb)
DOI: 10.15468/dl.7m8kpa
title: Occurrence Download

description: A dataset containing 298 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cheracebus lucifer (Thomas, 1914)"
 ]
}

 The dataset includes 298 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032205-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k529hu
title: Occurrence Download

description: A dataset containing 221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Microstomus achne (Jordan & Starks, 1904)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 221 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032206-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3615446_d2
title: MOESM3 of Cerebral blood perfusion changes in amputees with myoelectric hands after rehabilitation: a SPECT computer-aided analysis

description: Additional file 3. The activated regions of the five participants.
DOI: 10.6084/m9.figshare.c.3615188_d4
title: Additional file 1: of Multilocus sequence typing of Streptococcus thermophilus from naturally fermented dairy foods in China and Mongolia

description: Bacterial strains used in this study. (XLS 19 kb)
DOI: 10.6084/m9.figshare.c.3615188_d1
title: Additional file 2: of Multilocus sequence typing of Streptococcus thermophilus from naturally fermented dairy foods in China and Mongolia

description: Allelic profiles of analyzed Streptococcus thermophilus strains. (XLS 30 kb)
DOI: 10.6084/m9.figshare.c.3615122_d3
title: MOESM2 of Synovial fluid proteome in rheumatoid arthritis

description: Additional file 2: Table S2. List of proteins and their corresponding peptides identified in the study.
DOI: 10.6084/m9.figshare.c.3615122_d2
title: MOESM3 of Synovial fluid proteome in rheumatoid arthritis

description: Additional file 3: Table S3. Details of proteins identified in the study with reports on whether or not reported in PPD and gene ontology-based classification.
DOI: 10.6084/m9.figshare.c.3615011_d7
title: Additional file 4: Table S3. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

description: Excel file listing the locations of 15,203 cdBES on the physical map, their annotation, and synteny of the 16 Jr physical maps with the Vv, Pt, Md, Mt, Cs, and Fv pseudomolecules. The table shows the coordinates on the respective pseudomolecules for Vv, Pt, Md, Mt, Cs, and Fv genes with the lowest (in the columns designated .1) and second-lowest if obtained (in the columns designated .2) E-value. We colored cells with collinear genes with any color except for white or green. We used different colors to distinguish neighboring SBs from each other. We used white cell color to indicate non-collinear genes and green cell color to indicate collinear genes with the second-lowest E-value. (XLSX 7.26 mb)
DOI: 10.6084/m9.figshare.c.3615011_d1
title: Additional file 1: Table S1. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

description: Excel spreadsheet listing 1,525 SNP markers and their locations on the genetic maps of the 16 walnut chromosomes. (XLSX 106 kb)
DOI: 10.6084/m9.figshare.c.3614921_d6
title: Additional file 2: of Genome-wide identification, phylogeny and expressional profiles of mitogen activated protein kinase kinase kinase (MAPKKK) gene family in bread wheat (Triticum aestivum L.)

description: The primer sequences used for qRT-PCR analysis. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3614921_d7
title: Additional file 5: of Genome-wide identification, phylogeny and expressional profiles of mitogen activated protein kinase kinase kinase (MAPKKK) gene family in bread wheat (Triticum aestivum L.)

description: The detail of 18 TaMAPKKK orthologous genes in Arabidopsis thaliana. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3614921_d5
title: Additional file 3: of Genome-wide identification, phylogeny and expressional profiles of mitogen activated protein kinase kinase kinase (MAPKKK) gene family in bread wheat (Triticum aestivum L.)

description: Cis-regulatory elements found in the promoters of 155 wheat MAPKKK genes. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3614939_d4
title: Additional file 3: Table S3. of 19p13.2 Microdeletion including NFIX associated with overgrowth and intellectual disability suggestive of Malan syndrome

description: SNP-array data of Patient 3. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3614921_d4
title: Additional file 1: of Genome-wide identification, phylogeny and expressional profiles of mitogen activated protein kinase kinase kinase (MAPKKK) gene family in bread wheat (Triticum aestivum L.)

description: Accession number and samples information of RNA-seq data using in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3614939_d3
title: Additional file 1: Table S1. of 19p13.2 Microdeletion including NFIX associated with overgrowth and intellectual disability suggestive of Malan syndrome

description: SNP-array data of Patient 1. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3614939_d2
title: Additional file 4: Table S4. of 19p13.2 Microdeletion including NFIX associated with overgrowth and intellectual disability suggestive of Malan syndrome

description: SNP-array data of Patient 4. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3614921_d3
title: Additional file 7: of Genome-wide identification, phylogeny and expressional profiles of mitogen activated protein kinase kinase kinase (MAPKKK) gene family in bread wheat (Triticum aestivum L.)

description: FPKM values of the wheat MAPKKK gene in 5 tissues (grain, root, stem, leaf and spike) and under 4 abiotic stresses (drought, salt, heat and cold). (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3614939_d1
title: Additional file 2: Table S2. of 19p13.2 Microdeletion including NFIX associated with overgrowth and intellectual disability suggestive of Malan syndrome

description: SNP-array data of Patient 2. (XLSX 26 kb)
DOI: 10.21227/h4zg-vk53
title: network telescope dataset

description: 1Network telescopes collect and record unsolicited Internet-wide traffic destined to a routed but unused address space usually referred to as “Darknet” or “blackhole” address space. Among the largest network telescopes in the US, Merit Network operates one that receives unsolicited internet traffic on around 475k unused IP addresses. On an average day, the network telescope receives approximately 41.5kpackets per second and around 17M bits per second. Description of the attached dataset:1. Data Source:The origin of the data is a Network Telescope, a system used to collect unsolicited internet traffic for analysis, often related to malicious activities or misconfigurations.2. Collection Site:The data was collected at Merit Network, Inc., a nonprofit organization associated with the University of Michigan.3. Collection Period:The data was gathered over a specific timeframe, from August 11 to August 17, 2024, giving a week's worth of observations.4. Data Volume:The total size of the dataset is 554 GB, indicating a substantial amount of network traffic captured during the collection period.5. Annotation Method:The data was processed using a custom Rust-based script, which was used for parsing, annotating, and labeling the traffic data. This ensures the data is categorized appropriately for further analysis.6. Output Format:The processed data is saved in a CSV format, including TCP flags and an event type label, providing structured information for researchers to analyze traffic behavior effectively.
DOI: 10.6084/m9.figshare.c.3614921_d2
title: Additional file 6: of Genome-wide identification, phylogeny and expressional profiles of mitogen activated protein kinase kinase kinase (MAPKKK) gene family in bread wheat (Triticum aestivum L.)

description: Detail information of the network of TaMAPKKK with other wheat genes. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.c.3614888_d5
title: Additional file 2: of Required duration of mass ivermectin treatment for onchocerciasis elimination in Africa: a comparative modelling analysis

description: A zip-file, which includes the computer simulation program itself (with the JAVA program code embedded in it), batch files used to run the model, PDF documentation of the XML input, and example input and output files. Instructions on how to run the model are provided in Additional file 1 (ONCHOSIM simulation program.zip). (DOCX 15 kb)
DOI: 10.6084/m9.figshare.c.3614921_d1
title: Additional file 4: of Genome-wide identification, phylogeny and expressional profiles of mitogen activated protein kinase kinase kinase (MAPKKK) gene family in bread wheat (Triticum aestivum L.)

description: The chromosome position of the identified homologous TaMAPKKK genes and duplicated genes. (XLSX 12 kb)
DOI: 10.15468/dl.f9f22a
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Veraequa achne Jordan & Starks, 1904",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032208-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3614792_d5
title: Additional file 6: Software. of Intraspecific rearrangement of mitochondrial genome suggests the prevalence of the tandem duplication-random loss (TDLR) mechanism in Quasipaa boulengeri

description: The Perl script mtGordV0.5.pl with its readme file and example input and output files. (ZIP 5.35 kb)
DOI: 10.15468/dl.3nd9wv
title: Occurrence Download

description: A dataset containing 534 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((23.41981 65.99923,23.25944 65.33404,25.77198 65.41424,25.44053 66.06438,23.41981 65.99923))",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Erinaceidae, Ursidae, Salmonidae)"
 ]
}

 The dataset includes 534 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032209-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3614792_d2
title: Additional file 2: Table S2. of Intraspecific rearrangement of mitochondrial genome suggests the prevalence of the tandem duplication-random loss (TDLR) mechanism in Quasipaa boulengeri

description: The gene organization of â  WANCYâ   region for each sample. (XLS 77 kb)
DOI: 10.6084/m9.figshare.c.3614792_d3
title: Additional file 1: Table S1. of Intraspecific rearrangement of mitochondrial genome suggests the prevalence of the tandem duplication-random loss (TDLR) mechanism in Quasipaa boulengeri

description: Summary of sample localities and mitogenome regions sequenced for Quasipaa boulengeri. (XLS 84 kb)
DOI: 10.5281/zenodo.14420923
title: Subtle stressors – strong responses. Consistent negative effects of avian blood parasites on phenotypic and demographic traits across songbirds

description: Data & Code to reproduce meta-analysis: Pathogen-induced effects on phenotypic and demographic traits in songbirds

 

Code description (Folder R):

01_Hedges_g_calculation: Script to calculate effect sizes

02_meta_bayesian: Script to perform bayesian meta-analysis

03_meta_frequentist: Script to perform the same meta-analysis in a frequentist framework (this was done for testing, omitted in text)

05_forest_plot: Script for forest plot, including posterior distributions

06_map_plot: Script for various map plots

 

Data description (Folder Meta-analysis 2024)

Studies_Table_MG: Dataset included in study
DOI: 10.5281/zenodo.14420924
title: Subtle stressors – strong responses. Consistent negative effects of avian blood parasites on phenotypic and demographic traits across songbirds

description: Data & Code to reproduce meta-analysis: Pathogen-induced effects on phenotypic and demographic traits in songbirds

 

Code description (Folder R):

01_Hedges_g_calculation: Script to calculate effect sizes

02_meta_bayesian: Script to perform bayesian meta-analysis

03_meta_frequentist: Script to perform the same meta-analysis in a frequentist framework (this was done for testing, omitted in text)

05_forest_plot: Script for forest plot, including posterior distributions

06_map_plot: Script for various map plots

 

Data description (Folder Meta-analysis 2024)

Studies_Table_MG: Dataset included in study
DOI: 10.6084/m9.figshare.c.3614714_d12
title: Additional file 11: of Expression of OsMYB55 in maize activates stress-responsive genes and enhances heat and drought tolerance

description: DEG in MYB55 line leaf control condition associated to drought response/tolerance. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3614726_d5
title: Additional file 3: Table S2. of Transcriptome analysis indicated that Salmonella lipopolysaccharide-induced thymocyte death and thymic atrophy were related to TLR4-FOS/JUN pathway in chicks

description: Detailed information on IPA pathway analysis of DETs at different time points. a Over-represented pathways from up-expressed DETs at 12 hpt. b Over-represented pathways from down-expressed DETs at 12 hpt. c Over-represented pathways from up-expressed DETs at 36 hpt. d Over-represented pathways from down-expressed DETs at 36 hpt. e Over-represented pathways from up-expressed DETs at 72 hpt. f Over-represented pathways from down-expressed DETs. IPA pathways with Pâ
DOI: 10.6084/m9.figshare.c.3614714_d10
title: Additional file 2: of Expression of OsMYB55 in maize activates stress-responsive genes and enhances heat and drought tolerance

description: Expressed genes and alignment percentages in all samples. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3614726_d4
title: Additional file 2: Table S1. of Transcriptome analysis indicated that Salmonella lipopolysaccharide-induced thymocyte death and thymic atrophy were related to TLR4-FOS/JUN pathway in chicks

description: Detailed information on DETs at different time points. a Up-expressed DETs at 12 hpt. b Down-expressed DETs at 12 hpt. c Up-expressed DETs at 36 hpt. d Down-expressed DETs at 36 hpt. e Up-expressed DETs at 72 hpt. f Down-expressed DETs at 72 hpt. Transcripts were considered as DETs only with absolute fold changes ≥ 1.5 and P
DOI: 10.6084/m9.figshare.c.3614714_d9
title: Additional file 3: of Expression of OsMYB55 in maize activates stress-responsive genes and enhances heat and drought tolerance

description: List of all DEG in leaves. (XLSX 5263 kb)
DOI: 10.6084/m9.figshare.c.3614639_d5
title: Additional file 3: Table S2. of Genomic identification, characterization and differential expression analysis of SBP-box gene family in Brassica napus

description: Absolute gene expression values in twelve tissue samples. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3614639_d2
title: Additional file 5: Table S3. of Genomic identification, characterization and differential expression analysis of SBP-box gene family in Brassica napus

description: Absolute gene expression values in two samples. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3614624_d4
title: Additional file 4: of Clinical and epidemiological features of the 2014 large-scale dengue outbreak in Guangzhou city, China

description: Alignment file of DENV2 NS1 gene. (TXT 26Â kb)
DOI: 10.6084/m9.figshare.c.3614624_d3
title: Additional file 2: of Clinical and epidemiological features of the 2014 large-scale dengue outbreak in Guangzhou city, China

description: Alignment file of DENV2 E gene. (TXT 121Â kb)
DOI: 10.6084/m9.figshare.c.3614624_d2
title: Additional file 1: of Clinical and epidemiological features of the 2014 large-scale dengue outbreak in Guangzhou city, China

description: Alignment file of DENV1 E gene. (TXT 292Â kb)
DOI: 10.6084/m9.figshare.c.3614624_d1
title: Additional file 3: of Clinical and epidemiological features of the 2014 large-scale dengue outbreak in Guangzhou city, China

description: Alignment file of DENV1 NS1 gene. (TXT 33Â kb)
DOI: 10.6084/m9.figshare.c.3614582_d2
title: Additional file 2: of Health-related quality of life and its influencing factors for patients with hypertension: evidence from the urban and rural areas of Shaanxi Province, China

description: Label of the variables in the dataset. (TXT 1 kb)
DOI: 10.6084/m9.figshare.c.3614582_d1
title: Additional file 1: of Health-related quality of life and its influencing factors for patients with hypertension: evidence from the urban and rural areas of Shaanxi Province, China

description: Dataset used in this study. (XLS 971 kb)
DOI: 10.15468/dl.4p7gqn
title: Occurrence Download

description: A dataset containing 235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Meretrix lusoria (Röding, 1798)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 235 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032210-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3614306_d1
title: Additional file 1: of Quantitative succinylome analysis in the liver of non-alcoholic fatty liver disease rat model

description: The summary of all the identified succinylation sites and corresponding proteins. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.c.3614201_d1
title: Additional file 1: of Population-based geographic access to endocrinologists in the United States, 2012

description: State-specific percentages of populations with access to at least one endocrinologist, by age group and distances in the United States. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3613985_d3
title: Additional file 14: Table S6. of Analysis of transcriptional response to heat stress in Rhazya stricta

description: Selected differentially expressed genes in selected clusters of apical (a, A1-L4) and mature (b, A5-L8) leaves indicating the TFs co-expressed with Hsp and chaperone genes during the day (A, morning; F-H, midday & L, dusk) in R. stricta. (XLSX 42Â kb)
DOI: 10.6084/m9.figshare.c.3613985_d2
title: Additional file 1: Table S1. of Analysis of transcriptional response to heat stress in Rhazya stricta

description: Fold change values of assembled transcripts of R. stricta SRA database in different clusters in the apical leaves (A1-L4) at different time points of the day (A, morning; F-H, midday & L, dusk). (XLSX 775Â kb)
DOI: 10.6084/m9.figshare.c.3613970_d8
title: Additional file 4: of Reconstruction and analysis of the genome-scale metabolic model of schizochytrium limacinum SR21 for docosahexaenoic acid production

description: The annotation results about PKS proteins. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3613970_d7
title: Additional file 1: of Reconstruction and analysis of the genome-scale metabolic model of schizochytrium limacinum SR21 for docosahexaenoic acid production

description: Detailed information about model i CY1170_DHA. (XML 3178 kb)
DOI: 10.6084/m9.figshare.c.3613970_d6
title: Additional file 5: of Reconstruction and analysis of the genome-scale metabolic model of schizochytrium limacinum SR21 for docosahexaenoic acid production

description: Reactions involving NADPH which have fluxes in YE medium. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3613970_d5
title: Additional file 8: of Reconstruction and analysis of the genome-scale metabolic model of schizochytrium limacinum SR21 for docosahexaenoic acid production

description: Detailed information about the biomass composition of S. limacinum. (XLSX 173 kb)
DOI: 10.6084/m9.figshare.c.3613955_d6
title: Additional file 4: of Microvascular endothelial cells-derived microvesicles imply in ischemic stroke by modulating astrocyte and blood brain barrier function and cerebral blood flow

description: Availability of data for FITC-Dextran Flux, claudin-5 and ZO-1 protein level in vehicle, OGD-EMVs and n-EMVs treated astrocytes. (XLS 19 kb)
DOI: 10.6084/m9.figshare.c.3613970_d3
title: Additional file 3: of Reconstruction and analysis of the genome-scale metabolic model of schizochytrium limacinum SR21 for docosahexaenoic acid production

description: Comparison among three existing models of S. limacinum, M. alpina, and Y. lipolytica.(XLSX 89 kb)
DOI: 10.6084/m9.figshare.c.3613970_d2
title: Additional file 2: of Reconstruction and analysis of the genome-scale metabolic model of schizochytrium limacinum SR21 for docosahexaenoic acid production

description: Essential genes identified by different in silico media. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3613970_d1
title: Additional file 7: of Reconstruction and analysis of the genome-scale metabolic model of schizochytrium limacinum SR21 for docosahexaenoic acid production

description: Potential targets identified by MOMA which could enhance DHA production. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3613955_d5
title: Additional file 3: of Microvascular endothelial cells-derived microvesicles imply in ischemic stroke by modulating astrocyte and blood brain barrier function and cerebral blood flow

description: Availability of data for apoptotic rate, cleaved caspase-9 and Bcl-2 protein level in vehicle, OGD-EMVs and n-EMVs treated astrocytes. (XLS 19 kb)
DOI: 10.15468/dl.5qsp7e
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Venus lusoria Röding, 1798",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032212-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3613955_d4
title: Additional file 2: of Microvascular endothelial cells-derived microvesicles imply in ischemic stroke by modulating astrocyte and blood brain barrier function and cerebral blood flow

description: Availability of data for proliferation, GFAP, PI3K and Akt protein expression in vehicle, OGD-EMVs and n-EMVs treated astrocytes. (XLS 20 kb)