cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.2909/2512bab8-9221-422c-acbf-08167ed90649
title: High Resolution Vegetation Phenology and Productivity: PPI Seasonal Trajectories (raster 10m) version 1 revision 1, Sep. 2021

description: This metadata refers to the Plant Phenology Index (PPI) Seasonal Trajectories, is one of the products of the pan-European High Resolution Vegetation Phenology and Productivity (HR-VPP) component of the Copernicus Land Monitoring Service (CLMS). The Plant Phenology Index (PPI) is a physically based vegetation index for improved monitoring of plant phenology, that is developed from a simplified solution to the radiative transfer equation by Jin and Eklundh (2014) and that has a linear relationship with green leaf area index. The PPI Seasonal Trajectories (ST) product is derived from a TIMESAT-based function fitting of the time series of the PPI vegetation index and thus provides a filtered time series of Plant Phenology Index (PPI), with regular 10-day time step. The PPI dataset is made available as raster files with 10 x 10m resolution, in UTM/WGS84 projection corresponding to the Sentinel-2 tiling grid, for those tiles that cover the EEA38 countries and the United Kingdom and for the period from 2017 until today. It is updated in the first quarter of each year. Each file has an associated quality indicator (QFLAG) that provides a confidence level.
DOI: 10.17026/dans-xvu-rvk2
title: Using distant supervision to augment manually annotated data for relation extraction

description: This is the data for the paper "Using distant supervision to augment manually annotated data for relation extraction"Significant progress has been made in applying deep learning on natural language processing tasks recently. However, deep learning models typically require a large amount of annotated training data while often only small labeled datasets are available for many natural language processing tasks in biomedical literature. Building large-size datasets for deep learning is expensive since it involves considerable human effort and usually requires domain expertise in specialized fields. In this work, we consider augmenting manually annotated data with large amounts of data using distant supervision. However, data obtained by distant supervision is often noisy, we first apply some heuristics to remove some of the incorrect annotations. Then using methods inspired from transfer learning, we show that the resulting models outperform models trained on the original manually annotated sets.
DOI: 10.17026/dans-x8m-rm88
title: SWING studie: Samen op Weg naar INtegrale Geboortezorg

description: Het doel van integrale geboortezorg is kwalitatief goede, continue zorg te leveren waarbij de cliënt centraal staat, zoals beschreven in de Zorgstandaard Integrale Geboortezorg (ZIG). In de geboortezorg zijn er grofweg twee visies; het sociale model waarin zwangerschap en geboorte worden gezien als normale levensgebeurtenissen en het medische model waarin de gezondheidsrisico’s van zwangerschap en geboorte leidend zijn in de zorg. Deze visies en de daaruit voortvloeiende waarden kunnen met elkaar op gespannen voet staan.In de SWING-studie wordt een aangepaste vorm van de ‘functional resonance analysis method’ (FRAM) gebruikt als een bijzondere vorm van ‘participatory action research’ (PAR) om inzicht te krijgen in hoe zorgprocessen in de praktijk verlopen en kunnen leiden tot gunstige dan wel ongunstige uitkomsten van zwangerschap en geboorte en ervaringen. Deze inzichten vormen de basis voor een systematisch leer- en verbeterproces.DOELSTELLINGHet doel van de SWING-studie is om bij te dragen aan duurzame kwaliteitsverbetering binnen de geboortezorg. De onderzoeksvragen zijn:1. Op welke manier kan een intervisiemethode gebaseerd op FRAM cliënten, zorgverleners en organisaties ondersteunen in het proces van structurele en duurzame kwaliteitsverbetering?2. Hoe kan deze intervisiemethode cliënten, zorgverleners en organisaties helpen om een balans te vinden tussen de verschillende geboortezorg indicatoren die door het Zorginstituut zijn opgesteld bij de ZIG (gebaseerd op verschillende visies en waarden)?3. Hoe kan het leer- en verbeterproces van de geboortezorg organisatie aan de hand van deze intervisiemethode inzichtelijk gemaakt worden?4. Hoe kan de inbreng van een divers cliëntenperspectief structureel onderdeel worden van leren en verbeteren?RESULTAATTwee jaar lang kwamen zorgverleners en cliënten samen en gingen in gesprek over wat al goed gaat en wat nog beter kan in de dagelijkse zorgpraktijk. En dachten ze na over concrete verbeteracties. Als resultaat van de SWING-studie is er een toolkit gemaakt met praktische uitleg en materialen om mensen op weg te helpen die zelf aan de slag willen als multidisciplinaire leer- en verbetergroep in de geboortezorg.Zie hier voor de toolkit: https://www.childbirthnetwork.nl/intervisie-toolkit/
DOI: 10.17026/dans-zvs-betq
title: Population density estimate of leopards (Panthera pardus) in north-western Mpumalanga, South Africa, determined using spatially explicit capture–recapture methods

description: Raw data file for publication in Mammalian Biology
DOI: 10.17026/dans-z83-58w8
title: The COMPASSION study: implementation of integrated palliative care in COPD

description: Despite the urgent need for palliative care for patients with advanced chronic obstructive pulmonarydisease (COPD), it is not yet daily practice. In the COMPASSION study, the effect on patient outcomes as well as the implementation process of integrated palliative care in COPD was assessed. Eight hospital regions in the Netherlands were randomized. Healthcare professionals within intervention regions received a training on how to implement palliative care elements, namely identification of palliative patients, advance care planning, multidimensional assessment, symptom management and care coordination. Palliative patients were identified using the ProPal-COPD tool during a hospital admission for an acute exacerbation of COPD. Study data were also used to externally validate this tool.Questionnaires were completed by patients at baseline, after 3 and 6 months, and medical records assessed after 12 months. Outcome measures are: FACIT-Pal, FACIT-Sp-12, CCQ, HADS, satisfaction with care (NRS), patient goals of care (open question), acute healthcare use, survival status (within 1 year) and place of death.Three different data sets are available upon request:- Cross sectional data of 445 patients admitted to the hospital: demographic and clinical baseline characteristics, PROMs at baseline.- Demographics, Propal-COPD indicators and survival data of 500 patients.- Trial data of 217 patients with a positive Propal-COPD score: demographic and clinical baseline characteristics, PROMs at baseline, after 3 and 6 months, medical records data on acute healthcare use.Also, a SPSS syntax file on the calculation of total scores of PROMs used is available.
DOI: 10.17026/dans-zf3-7tt4
title: Data underlying the publication: "A mammalian commensal of the oropharyngeal cavity produces antibiotic and antiviral valinomycin in vivo"

description: Around weaning, piglets are susceptible to infection by bacterial pathogens, leading to increased morbidity and mortality. We identified isolates of Rothia nasisuis in the upper respiratory tract of weaned healthy piglets that produce valinomycin in vitro and in vivo via a giant multimodule non-ribosomal peptide synthase (NRPS) enzyme complex. Valinomycin is an antiviral and antibiotic ionophore that shuttles potassium ions across membranes and is capable of inflammasome activation and apoptosis in LPS-primed macrophages. R. nasisuis inhibited growth of Streptococcus and Rothia species inhabiting the same niche. To investigate the potential for the valinomycin-producing Rothia nasisuis strain to colonize new-born piglets we performed a colonization study in newborn litters of piglets. Briefly, the newborn piglets of 3 sows farrowing on the same day were randomized between the three sows to avoid genetic bias in the experiment. The sows were housed in separate maternity pens and the piglets marked so they could be identified during the study. 9 of the 12 piglets nursed by sows A and B (further referred to as litters A and B) were orally administered approximately 10exp9 CFU of valinomycin-producing R. nasisuis, using a syringe on d2, d19 and day 27 after birth. Three 3 piglets in litters A and B were not inoculated with R. nasisuis to see if they became colonized by horizontal transfer. As a control group all the piglets housed with the sow C (further referred to as litter C) were not inoculated with R. nasisuis.
DOI: 10.17026/dans-27e-s6yf
title: A review of the level of evidence for pediatric pharmacotherapy.

description: The Dutch Pediatric Formulary (DPF) provides best evidence-based dosing guidelines for drugs used in children. For each drug-indication-age group combination– together compiling one record we scored the highest available level of evidence: labelled use, systematic review or meta analysis, randomized controlled trial (RCT), comparative research, non-comparative research, or consensus-based expert opinions. For records based on selected guidelines, the original sources were not reviewed. These records were scored as guideline.The file contains 3 sheets:1. the level of evidence per drug2. the level of evidence per indication3: the level of evidence for PKUse the filters in the header row to select drugs, drug groups, age categories or levels of evidence of interest.Drug names and indication names are listed in Dutch.
DOI: 10.17026/dans-zs7-4htw
title: Substance use, Unlike Dolutegravir, is Associated with Mood Symptoms in People Living with HIV

description: Contradictory data have been reported concerning neuropsychiatric side effects of the first-line antiretroviral drug dolutegravir, which may be partly due to lack of control groups or psychiatric assessment tools. This dataset report BIS-11, DASS-42, MATE-Q scores of 194 people living with HIV receiving dolutegravir-containing treatment (82/194) or alternative treatment (112/194).The results from this database have been published and are available at:Van de Wijer, L., et al., Substance use, Unlike Dolutegravir, is Associated with Mood Symptoms in People Living with HIV. AIDS Behav, 2021. https://doi.org/10.1007/s10461-021-03272-2
DOI: 10.17026/dans-z4m-bfwe
title: Epidemiological data on neonatal sepsis in China and the United States

description: This is a dataset from the GBD database (http://ghdx.healthdata.org/gbd-results-tool), including the disability-adjusted life years (DALYs), deaths, prevalence, incidence, DALYs and deaths due to short gestation and low birth weight in early and late neonates with neonatal sepsis in China and the United States.
DOI: 10.17026/dans-z68-mbyq
title: Elfde Peiling Veilig Slapen

description: Doel: Onderzoeken in hoeverre ouders van zuigelingen landelijke adviezen over veilig slapen ter preventie van wiegendood opvolgen, en wat redenen zijn om af te wijken van adviezen over slaaphouding (altijd op de rug) en slaapplek (ouders en kind slapen niet samen in één bed).De opzet betrof een kwantitatief en kwalitatief dwarsdoorsnedeonderzoek.De methode betrof een online-vragenlijstonderzoek onder ouders van kinderen van 0-11 maanden via consultatiebureaus en online media.
DOI: 10.17026/dans-xtm-cn6q
title: Long-term Staphylococcus aureus decolonization in patients on home parenteral nutrition: a randomized multicentre trial

description: Long-term Staphylococcus aureus decolonization in patients on home parenteral nutrition: a randomized multicentre trial. To determine the most effective and safe long-term S. aureus decolonization regimen for patients on home parenteral nutrition (HPN) with a central venous access device (CVAD).AbstractObjectivesTo determine the most effective and safe long-term S. aureus decolonization regimen for patients on home parenteral nutrition (HPN) with a central venous access device (CVAD).MethodsA randomized, open-label, multicenter clinical trial was conducted. Patients on HPN using a CVAD and carrying S. aureus were randomly assigned to a ‘search and destroy’ (SD) strategy, a quick and short, systemic antibiotic treatment, or a ‘continuous suppression’ (CS) strategy, a repeated chronic topical antibiotic treatment. The primary outcome was the proportion of patients in whom S. aureus was totally eradicated during a 1-year period. Secondary outcomes included risk factors for decolonization failure and S. aureus infection, antimicrobial resistance, adverse events, patient compliance, quality of life, and cost-effectivity.Results63 participants were included (SD 32; CS 31) between February 2018 and October 2021. The mean 1-year S. aureus decolonization rate was 39% (95% CI 25, 56) for the SD group and 61% (95% CI 44, 75) for the CS group with an OR of 2.38 (95% CI 0.92, 6.11, P = 0.07). Significantly more adverse effects related to the study medication occurred in the SD group (P = 0.01). Independent predictors for eradication failure were a S. aureus positive caregiver and presence of a (gastro)enterostomy . In three SD participants, resistance to previously administered antibiotics occurred.ConclusionsOur trial did not demonstrate an increased efficacy of a short and systemic S. aureus decolonization strategy over a continuous topical suppression treatment for patients with a CVAD. The latter may be the best option as it achieved a higher long-term decolonization rate and was well-tolerated (NCT03173053).
DOI: 10.17026/dans-xcy-836v
title: Evaluating the impact of fish conservation zones on biodiversity

description: Evaluation of the impact of no-take areas on biodiversity (species richness) using a matching design
DOI: 10.6084/m9.figshare.24722268
title: Table S3. Differential methylation of cancer vs control results in CpG sites

description: Table S3 DM of CpG sites in cancer vs control samples From paper:<br>Multiomics analysis in head and neck cancer reveals distinct role of miRNome and methylome as tumour epigenetic drivers
DOI: 10.6084/m9.figshare.24722268.v1
title: Table S3. Differential methylation of cancer vs control results in CpG sites

description: Table S3 DM of CpG sites in cancer vs control samples From paper:<br>Multiomics analysis in head and neck cancer reveals distinct role of miRNome and methylome as tumour epigenetic drivers
DOI: 10.6084/m9.figshare.24722268.v2
title: Table S3. Differential methylation of cancer vs control results in CpG sites

description: Table S3 DM of CpG sites in cancer vs control samples From paper:<br>Multiomics analysis in head and neck cancer reveals distinct role of miRNome and methylome as tumour epigenetic drivers
DOI: 10.17026/dans-25p-82rx
title: Data belonging to article "A mutualism between unattached coralline algae and seagrasses prevents overgrazing by sea turtles", published in Ecosystems

description: Data belonging to article "A mutualism between unattached coralline algae and seagrasses prevents overgrazing by sea turtles", published in Ecosystems. Collected in Quintana Roo, Mexico, in 2015 and 2017.
DOI: 10.17026/dans-2ah-xcdm
title: Dryland interactions

description: Dataset accompanying the paper: Schild, J.E.M., Vermaat, J.E., van Bodegom, P.M., 2018b. Differential effects of valuation method and ecosystem type on the monetary valuation of dryland ecosystem services: a quantitative analysis. J. Arid Environ. 159, 11–21. doi:10.1016/j.jaridenv.2017.09.001
DOI: 10.17026/dans-zq6-pzdk
title: Data from: Resilience of beach grasses along a biogeomorphic successive gradient: resource availability versus clonal integration

description: Data from: Resilience of beach grasses along a biogeomorphic successive gradient: resource availability versus clonal integration. OecologiaHere, we report on the effects of clonal integration and resource availability on the resilience of two common European dune building grasses (Ammophila arenaria & Elytrigia juncea).This dataset contains data from a field experiment we conducted on the west Frysian barrier island of Schiermonnikoog in the spring and summer of 2017. Full methodology on the experimental set-up can be found in the linked paper. Dataset includes measurements on the regrowth potential of patches of both Ammophila arenaria & Elytrigia juncea after clipping all shoots. In addition we report the soil and plant tissue nutrient levels of all experimental plots.
DOI: 10.17026/dans-xh7-ajkm
title: Data of 'Chemical fate of persistent organic pollutants in the arctic: Evaluation of simplebox'

description: In our paper ‘Chemical fate of persistent organic pollutants (POPs) in the arctic: Evaluation of simplebox’ (10.1016/j.scitotenv.2020.137579), we used SimpleBox multimedia fate model (v4.0) to estimate the fate of POPs in the Arctic. We evaluated its performance by comparing the estimations to measurements in Arctic air (1990-2015) and seawater (1985-2015). Model performance for the air compartment was reasonable as estimated concentrations were generally within a factor of five of measured concentrations. SimpleBox suggested higher POP concentrations in Arctic oceans than in temperate oceans, contrary to the few measured data.This dataset contains the measured and estimated POP concentrations in Arctic air and seawater. Measured air concentrations were derived from the data warehouse for the Global Monitoring Plan (GMP) for POPs under the Stockholm Convention (http://www.pops-gmp.org/visualization-2014). Measured seawater concentrations were obtained through an extensive literature search. Estimated POP concentration were generated by SimpleBox multimedia fate model (v4.0).
DOI: 10.17026/dans-zee-669p
title: Dataset from: On the importance of root traits in seedlings of tropical tree species

description: Data from: On the importance of root traits in seedlings of tropical tree speciesHere, we discuss biomass allocation of tropical tree species at the seedling stage, and how they differ between species originating from different vegetation types. We discuss how extreme stressors (drought and fire) can alter biomass allocation patterns as expected under the functional equilibrium hypothesis. Specifically, we tested whether above- and below-ground traits of tropical tree seedlings could explain observed occurrence along gradients of resources (light, water) and defoliation(fire, herbivory).We selected species from the following taxa: Meliaceae, Leguminosae, and Combretaceae, found on the following ecosystems: dry savanna, wet savanna, moist savanna, transition zone, dry forest, wet forest, moist forest. The seedlings grew for 6 months in a greenhouse. The experiment started in June 2015. We measured the following traits: starch concentration; specific root length; mean rooting depth; root mass fraction; leaf area ratio; specific leaf area; leaf size; stem mass fraction; leaf mass fraction; plant weight. The root data was analyzed with WinRHIIZO software.This dataset contains information on all traits for all species included in the experiment (mean and standard deviation values).
DOI: 10.17026/dans-z5e-nhxv
title: Quantitative remote sensing of vegetation properties and functioning under normal and dry conditions

description: The main idea of this research is to exploit multiple observations including time-series of optical, thermal (TIR) and soil moisture data for remote sensing of vegetation properties and functioning under normal and dry conditions. It is significant to investigate the information content of such observations and quantify the impact of their synergistic use to explain drought effects on vegetation functioning. Therefore, understanding how much information one can get from different sensors (e.g., optical, TIR and soil moisture) to see vegetation (here for annual C3 grasses) properties and functioning (notably canopy photosynthesis [gross primary production (GPP)] and evapotranspiration (ET)) variations during a drought episode and whether combined use of this information can enhance vegetation functioning estimations is of great interest. This study describes the importance of plant functioning, drought effects, application of remote sensing and in-situ observations, methods for plant functioning assessment, the proposed coupled modeling approach. For more information, the reader is refereed to the digital version of the thesis here:https://library.itc.utwente.nl/papers_2018/phd/bayat.pdf
DOI: 10.17026/dans-xrz-ztg8
title: Data underlying the publication "Within-patch and edge microclimates vary over a growing season and are amplified during a heatwave: Consequences for ectothermic insects"

description: Temperatures were measured in a small-scale mesocosm (1 m2) experiment during an 8-week period in the summer of 2020, in the Netherlands. The period included a heatwave. Forty mesocosms, each devided in 4 quadrants, were planted with forbs. Temperatures were measured three time a week, during the warmest part of the day, i.e. between 1400 and 1500 h. using an infrared thermometer gun (BOSCH Thermodetector PTD1). Temperatures were mearured near the soil surface at the edge of the mesocosm, near the soil surface between two quadrants in each mesocosm. Within each mesocosm, as well as within the plant canopy. In addition the ambient temperature was measured.
DOI: 10.17026/dans-x2n-fxxt
title: CE-CERT for prevention of burnout for attending physicians and general pediatric residents: A grounded theory investigation

description: Background: Physician burnout has been identified as a significant occupational hazard for decades. Burnout prevention may target individual and workplace environment factors; however, a gold standard approach to prevention has yet to be established. Components for Enhancing Clinician Experience and Reducing Trauma (CE-CERT) is both a practice and peer supervision model for promoting wellness among helping professionals. This study sought to explore the experiences of a group of attending physicians at a mid-size pediatric residency program in an urban free-standing children’s hospital as they learned and implemented CE-CERT.Methods: A total of seven attending physicians participated in CE-CERT during the academic year between 2020 and 2021. Semi-structured interviews were conducted with five of the seven participants (71%) after completion of the program to explore their experiences with CE-CERT in their personal and professional lives. Through constructivist grounded theory methods, attending physician experiences with CE-CERT were systematically analyzed.Results: Rigorous analysis revealed six common themes around the attending experiences with the CE-CERT model in their personal and professional lives. The six themes were as follows: 1) It’s given me a framework, 2) It’s given me insight, 3) Taking a minute, 4) Gave me skills to use, 5) You can do this without being overwhelmed, and 6) We connected. The themes were organized in a pictorial representation of their interactions.Conclusions: This study found that the CE-CERT program taught skills and concepts to our sample of attending physicians that were applicable and promoted self-motivation with potential to mitigate burnout and promote compassion satisfaction and professional quality of life.