cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3746453
title: Data and code for: The maleness of larger angiosperm flowers

description: <strong>Data and Code for the article:</strong> <strong>The maleness of larger angiosperm flowers</strong> <em>Gustavo Brant Paterno, Carina Lima Silveira, Johannes Kollmann, Mark Westoby,<br> and Carlos Roberto Fonseca</em> <strong>Content of the repository</strong> 1. <strong>Data</strong>: the folder `data` contais The raw and processed data files with flower biomass partition (.csv) The phylogenetic trees used in the study (.tre) 2. <strong>Images</strong>: the folder `images` contais Flower drawings used in the manuscript figures. 3. <strong>Outputs</strong>: the folder `outputs` contais The figures, tables and temporary files generated. <br> 4. <strong>R</strong>: the folder `R` contais Scripts (.R) to generate all figures and tables used in the manuscript and in the supporting information. <br> ***<br> When using the __data available__ in this repository, please cite the original publication. Contact paternogbc@gmail.com for any further information.
DOI: 10.5281/zenodo.3902998
title: The EAMv1 simulation datasets for the manuscript

description: The EAMv1 simulation datasets for the manuscript "Effects of Coupling a Stochastic Convective Parameterization with Zhang-McFarlane Scheme on Precipitation Simulation in the DOE E3SMv1 Atmosphere Model"
DOI: 10.5281/zenodo.3960136
title: MIS 5e sea-level proxies in southern Africa (Angola, Namibia and South Africa)

description: Standardized database of dated sea-level indicators from southern Africa (Angola-South Africa) from MIS5e
DOI: 10.5904/wgms-glathida-2019-03
title: Glacier Thickness Database (GlaThiDa) 3.0.1

description: Internationally collected, standardized dataset on glacier thickness from in-situ and remotely sensed observations, based on data submissions, literature review and airborne data from NASA’s Operation IceBridge.
DOI: 10.6084/m9.figshare.12933863
title: S.DB.1| Microbial composition of Lake Kinneret sediments and slurry incubations based on ‎SILVA (V132) database -Taxonomic classification (up until genus level) and abundance (in ‎percentage) based on metagenomic reads to SILVA (V132) database. Eukaryote, Chloroplast, ‎Mitochondria sequences were removed before normalization.‎

description: Microbial composition of Lake Kinneret sediments and slurry incubations based on SILVA (V132) database -Taxonomic classification (up until genus level) and abundance (in percentage) based on metagenomic reads to SILVA (V132) database. Eukaryote, Chloroplast, Mitochondria sequences were removed before normalization.
DOI: 10.6084/m9.figshare.12933893
title: S.DB.3| Abundance and classification of genes in Lake Kinneret sediments and slurry incubations ‎based on KEGG orthology (in units of counts per million (CPM)). ‎Untitled Item

description: <b>S.DB.3|</b> Abundance and classification of genes in Lake Kinneret sediments and slurry incubations based on KEGG orthology (in units of counts per million (CPM)).
DOI: 10.6084/m9.figshare.28192100
title: <b>Local and regional-scale climate variability drives complex patterns of growth synchrony and asynchrony in deep-sea snappers across the Indo-Pacific</b>

description: Climatic variation can play a critical role in driving synchronous and asynchronous patterns in the expression of life history characteristics across vast spatiotemporal scales. The synchronisation of traits, such as an individual’s growth rate, under environmental stress may indicate a loss of phenotypic diversity and thus increased population vulnerability to stochastic deleterious events. In contrast, synchronous growth under favourable ecological conditions and asynchrony during unfavourable conditions may help population resilience and buffer against the negative implications of future environmental variability. Despite the significant implications of growth synchrony and asynchrony to population productivity and persistence, little is known about its causes and consequences either within or among fish populations. This is especially true for long-lived deep-sea species that inhabit environments characterised by large-scale interannual and decadal changes, which could propagate growth synchrony across vast distances. We developed otolith growth chronologies for three deep-sea fishes (<i>Etelis</i> <i>spp.</i>) over 65˚ of longitude and 20˚ of latitude across the Indo-Pacific region. Using reconstructed time series of interannual growth from six distinct Exclusive Economic Zones (EEZs), we assessed the level of spatial synchrony at the individual-, population- and species-scale. Across five decades of data, complex patterns of synchronous and asynchronous growth were apparent for adult populations within and among EEZs of the Pacific Ocean, mediated by shifts in oceanographic phenomena such as the Pacific Decadal Oscillation (PDO). Overall, our results indicate that the degree of synchrony in biological traits at depth depends on life history stage, spatiotemporal scales of environmental variability, and the influence of ecological factors such as competition and dispersal. By determining the magnitude and timing of spatially synchronous growth at depth and its links to environmental variability, we can better understand fluctuations in deep-sea productivity and its vulnerability to future environmental stressors, which are key considerations for sustainability.
DOI: 10.6084/m9.figshare.28321706
title: Supplementary Material for: Association between serum iron store biomarkers and all-cause mortality in Japanese patients undergoing hemodialysis: a nationwide cohort study

description: Introduction
We evaluated the association between iron-related biomarkers—key indicators of iron metabolism and inflammation, and crucial in the management of anemia in patients undergoing hemodialysis—and all-cause mortality. This study aimed to clarify the nuanced relationship between these biomarkers and mortality outcomes, addressing the limitations of traditional cutoff-based analyses.
Methods
We conducted a prospective cohort analysis of patients undergoing dialysis across Japan using data from the Japan Renal Database collected between 2019 and 2020. Patients who had been on dialysis for at least 3 months by the end of 2019 were considered eligible. The associations between iron-related biomarkers and all-cause within 1 year were analyzed using Cox proportional hazards models. The relationship between each biomarker and outcome was illustrated using restricted cubic spline curves, while the combined association of serum ferritin and TSAT with mortality was shown using contour plots.
Results
A total of 215,927 patients were included in the analysis. During the follow-up period, 17,803 (8.24%) deaths were recorded. Contour plots demonstrated increased mortality risk in areas with low ferritin and TSAT levels. Additionally, even in regions with high TSAT levels, there was a trend toward increased mortality risk with increasing ferritin levels. Conversely, in areas with low ferritin levels, there was a trend toward a decreased risk of death.
Conclusions
Our findings highlight the complex interplay between serum ferritin and TSAT levels, emphasizing the limitations of relying on single cutoff values for clinical decision-making. The study underscores the need for individualized approaches to iron management in patients undergoing hemodialysis.
DOI: 10.7302/xjzc-xy05
title: Biogeosciences 2019 GEOSChem v12.0.0 CO2 response dataset

description: Files contain the atmospheric CO2 mole fraction responses to land flux type (HRcasa, HRcorpse, HRmimics) and land flux region (latband variable). Land flux regions are categorized as: Northern Hemisphere high latitudes (NHL; 61 to 90°N), midlatitudes (NML; 24 to 60°N), tropics (NT; 1 to 23°N), Southern Hemisphere tropics (ST; 0 to 23°S), and extratropics (SE; 24 to 90°S). See the README file for how these land flux region definitions relate to the file's latband variable.;To cite dataset: Basile, S., Lin, X., Keppel-Aleks, G. (2019). Simulated CO2 dataset using the atmospheric transport model GEOSChem v12.0.0: Response to regional land carbon fluxes [Data set]. University of Michigan - Deep Blue. https://doi.org/10.7302/xjzc-xy05
description: We ran the GEOS-Chem v12.0.0 atmospheric transport model at a resolution of 2.0° in latitude by 2.5° in longitude with 47 vertical levels to simulate the imprint CASA testbed land fluxes on atmospheric CO2 (testbed fluxes described in Wieder et al., 2018
description: https://doi.org/10.1111/gcb.13979). Testbed fluxes of soil heterotrophic respiration (HR) and net primary productivity (NPP) are used as boundary conditions for the transport model. The model is initialized with a globally-uniform atmospheric CO2 mole fraction equal to 350 ppm. This file contains the monthly averaged atmospheric CO2 mole fraction simulated by the model for 01-01-1980 to 12-01-2010. Results of the first two years (1980 and 1981) are reserved for model spin-up. See the README file for more details on the GEOSChem v12.0.0 initialization.
DOI: 10.7931/l1r94
title: NZDEM South Island 25 metre
DOI: 10.17632/s55kg4fdyx.1
title: 3-year monitoring of ventilation, indoor air and electricity use in a single-family house

description: Monitoring data from a single-family house (two storeys, 150m² floor area) in central Sweden, 2019-2022.
A long term study was conducted with a 4-person family living in a newly-built Nordic home. Ventilation system interventions allow indoor conditions and energy consumption to be compared year-on-year, with alternative ventilation hardware and operational modes. Data also covers period of Covid-19 disruptions.
• Hourly electricity metering, supplemented by rooftop photovoltaic solar panel production through two years.
• Approx 8-minute interval differential pressure meter readings for whole house ventilation flows, using various ventilation systems and operational modes.
• Approx 10-minute interval indoor environmental quality monitoring (temperature °C, CO2 concentration ppm, relative humidity %, particulates µg/m³) in master bedroom and in open plan livingroom/kitchen.
DOI: 10.18157/qogstdjan24
title: The Quality of Government Standard Dataset, version Jan24
DOI: 10.21944/qa4ecv-no2-omi-v1.1
title: QA4ECV NO2 tropospheric and stratospheric column data from OMI

description: The QA4ECV NO2 Essential Climate Variable precursor product contains
      harmonized vertical NO2 column data: tropospheric vertical column
      densities and stratospheric vertical column densities.
     
      The NO2 ECV precursor data in this dataset provides geophysical
      information for ground pixels observed by the Ozone Monitoring
      Instrument (OMI, aboard the EOS-Aura satellite; overpass time:
      circa 13:40 hrs) for the period October 2004 onwards.
     
      In addition to the vertical NO2 columns, the product contains
      intermediate results, such as the result of the spectral fit,
      fitting diagnostics, the averaging kernel, cloud information, 
      and algorithm and product uncertainty estimates.
DOI: 10.25921/0mpp-h192
title: Continuously Updated Digital Elevation Model (CUDEM) - 1/3 Arc-Second Resolution Bathymetric-Topographic Tiles
DOI: 10.5281/zenodo.13121434
title: Foldseek Multimer

description: Rapid and Sensitive Protein Complex Alignment with Foldseek-Multimer

Advances in computational structure prediction will vastly augment the hundreds of thousands of currently-available protein complex structures. Translating these into discoveries requires aligning them, which is computationally prohibitive. Foldseek-Multimer computes complex alignments from compatible chain-to-chain alignments, identified by efficiently clustering their superposition vectors. Foldseek-Multimer is 3-4 orders of magnitudes faster than the gold standard, while producing comparable alignments; allowing it to compare dozens of billions of complex-pairs in a day. Foldseek-Multimer is open-source software: github.com/steineggerlab/foldseek and webserver: search.foldseek.com.

NoticeThis Zenodo release accompanies the GitHub repository, which contains both the analysis scripts as well as clarifications about the data in this release.
DOI: 10.5281/zenodo.13969155
title: Source data for "Synthesis of a semimetallic Weyl ferromagnet with point Fermi surface"

description: Source data for "Synthesis of a semimetallic Weyl ferromagnet with point Fermi surface" by I. Belopolski et al. Nature (2025), https://www.nature.com/articles/s41586-024-08330-y
DOI: 10.6084/m9.figshare.27086794
title: Breaking linear scaling relationships in oxygen evolution via dynamic structural regulation of active site

description: Source data in main article and supplementary information.
DOI: 10.6084/m9.figshare.28321400
title: Supplementary Material for: “Curvularia Lunata-Induced Onychomycosis in an Unlikely Host - A Case report”

description: Introduction: Onychomycosis, a fungal infection of the nail apparatus, presents with various manifestations, including subungual hyperkeratosis, onycholysis and nail plate destruction. Established risk factors include trauma, advanced age, and comorbidities such as diabetes and immunosuppression. Trichophyton rubrum, classified as a dermatophyte, is the primary causative agent, with dermatophytes contributing to 60-70% of cases. Nondermatophyte molds (NDM) account for 30-40% of onychomycosis with Candida species being the most commonly identified, while Curvularia species are rarely encountered. Curvularia lunata, a saprobic dematiaceous mold, is an infrequent human pathogen primarily residing in soil. While human diseases caused by Curvularia are rare, they encompass a spectrum from skin infections to endocarditis. 
Case presentation: This case report details a 53-year-old male engineer presenting with left big toenail discoloration, revealing a Curvularia lunata-induced onychomycosis through positive KOH preparation and culture. Given the patient's concurrent use of ticagrelor, oral terbinafine hydrochloride was chosen as a therapeutic option, taking into account potential drug-drug interactions. This approach resulted in complete resolution. The discussion emphasizes distinctions in disease severity among immunocompromised and immunocompetent patients, the potential role of trauma in Curvularia infections, and the importance of comprehensive diagnostic examinations. 
Conclusion: This case report provides insight into the challenges of accurate diagnosis, emphasizing the need for routine fungal cultures. Additionally, it discusses the complexities of treatment options, considering factors such as drug interactions and patient-specific conditions, and highlighting the importance of tailored management plans. This case is reported because of the rarity of onychomycosis caused by Curvularia in immunocompetent individuals.
DOI: 10.6084/m9.figshare.28342634
title: Supplementary Material for: Identification of Fatty Acid-Binding Protein 4 as a Potential Biomarker and Therapeutic Target for ANCA-Associated Glomerulonephritis

description: Introduction: 
Fatty acid-binding protein 4 (FABP4) is a novel adipokine that is critically involved in many inflammatory and immune diseases. However, the role of FABP4 in anti-neutrophil cytoplasmic antibody (ANCA)-associated glomerulonephritis (ANCA-GN) remains unclear. The current study aimed to investigate the role of FABP4 in patients with ANCA-GN. 
Methods: 
Plasma and urine samples from 37 patients with active ANCA-GN and kidney biopsy specimens from another group of 56 patients with ANCA-GN were collected. The plasma and urinary level of FABP4 were measured by enzyme-linked immunosorbent assay and the kidney FABP4 expression was determined by immunohistochemistry and immunofluorescence staining. Associations between FABP4 levels with clinical and pathologic parameters were analyzed. To further elucidate the role of FABP4 in ANCA-GN, a novel FABP4 inhibitor BMS309403 was employed in a recognized rat model of experimental autoimmune vasculitis (EAV).
Results: 
Plasma and urinary levels of FABP4 in active ANCA-GN patients were significantly higher than those in normal controls (52.8 ± 23.6 ng/ml vs. 16.9 ± 8.8 ng/ml, P&lt;0.01; median 126.6 [interquartile range (IQR) 28.4-311.2] ng/g Cr vs. median 0.0 [IQR 0.0-0.0] ng/g Cr, P&lt;0.01, respectively). Immunohistochemical analysis revealed higher glomerular and tubular expression of FABP4 in the kidneys of ANCA-GN patients than those in normal controls (0.015 ± 0.012 vs. 0.004 ± 0.003, P&lt;0.001; 0.053 ± 0.026 vs. 0.011 ± 0.010, P&lt;0.001, respectively). Moreover, for ANCA-GN patients, urinary FABP4 levels were significantly higher in active ANCA than those in remission (184.3 ± 187.0 ng/g Cr vs. 9.4 ± 23.9 ng/g Cr, P&lt;0.01). Correlation analysis showed that urinary levels of FABP4 correlated with serum creatinine (r=0.596, P&lt;0.0001), urinary albumin/Cr (r=0.523, P=0.001), blood neutrophil ratio (r=0.386, P=0.018), PT (r=0.583, P=0.001), APTT (r=0.364, P=0.034), hemoglobin level (r=-0.398, P=0.015), eGFR (r=-0.680, P&lt;0.0001), crescent proportion (r=0.661, P=0.032) and all-cause death of ANCA-GN patients (HR 2.93, 95%CI (1.05-8.19)). Furthermore, FABP4 inhibition by BMS309403 ameliorated renal injury in a rat mole of ANCA-GN.
Conclusions: 
Urinary FABP4 levels might reflect the disease activity and renal involvement of ANCA-associated vasculitis, and FABP4 might act as a promising therapeutic target against ANCA-GN.
DOI: 10.15152/qdb.263
title: Data for: Data-driven machine learning of chronic toxicity of imbalanced heterogeneous pesticide data to earthworms. QsarDB repository, QDB.

description: This QDB archive contains data and model(s) from the following publication: Kotli, M.; Piir, G.; Maran, U. Data-driven machine learning of chronic toxicity of imbalanced heterogeneous pesticide data to earthworms.
DOI: 10.15784/601359
title: Roosevelt Island Ice Core Time Scale and Associated Data

description: Data archived here were used to create the Roosevelt Island Ice Core gas age and ice age time scales. Data include methane concentrations, nitrogen and oxygen isotope ratios of N2 and O2, total air content and the D/H ratio of the ice. Derived products included here include ice age and gas age time scales.
DOI: 10.1594/ieda/324286
title: Raw Hydrographic Data from the Southern Ocean acquired during R/V Nathaniel B. Palmer expedition NBP1704 (2017)

description: This data set was acquired with a Sea-Bird Electronics SBE-911+ CTD during R/V Nathaniel B. Palmer expedition NBP1704 conducted in 2017 (Chief Scientist: Dr. Stephen Ackley, Investigator: Dr. Stephen Ackley). These data files are of Sea-Bird CTD format and include Conductivity, Pressure and Temperature data. Funding was provided by NSF award(s): OPP13-41717, OPP15-43483.
DOI: 10.1594/pangaea.905214
title: High resolution continuous record of color (a*) of the 20 m thick loess palaeosol sequence of Harletz, Bulgaria

description: The high-resolution colour reflectance data were acquired with a Minolta CM 2600d over the extended visible wavelength domain from 360 to 740 nm and operating with a 6504 K light source.
DOI: 10.17632/gbrfkz2w2j.1
title: Corrosion Inhibition Studies of Mebendazole (MBZ) for Mild Steel in Sulphuric Acid.

description: Th
DOI: 10.25375/uct.8229557.v1
title: Nutrition related health status and associated factors in juvenile male and female on remand detainees at entry into Pollsmoor correctional service facility in the Western Cape (dataset)

description: Research data for the MA Thesis: Nutrition related health status and associated factors in juvenile male and female on remand detainees at entry into Pollsmoor correctional service facility in the Western Cape.<br>Design/Methodology: In this cross-sectional comparative study of 67 male and 52 female young on-remand detainees the following was assessed during 2016-2017: socio-demographic information, hunger score (CDC FANTA project hunger score), meal pattern, food choices (Non-quantified FFQ), understanding of healthy eating, physical activity (GPAQv2), risk taking behaviours, body shape perception, symptoms of depression and anxiety (K10 tool) and specific anthropometric measures including weight, height, triceps-skinfold, mid-upper arm circumference and handgrip strength. BMI and the corrected arm muscle area were calculated.<br>The pdf of the thesis is accessible at http://hdl.handle.net/11427/33202 <br>Approval was granted by UCT HREC, National department of correctional services South Africa and permission was granted to publish information. <br>
DOI: 10.5281/zenodo.10940280
title: US soil profile EW code

description: README file, Matlab code, datasets for modelling ERW across the US
DOI: 10.5281/zenodo.11047093
title: Data for article: Mapping temporal variations in ecosystem services: a case study of European wood supply and demand between 2008 and 2018

description: The data consists of the indicators for spatio-temporal analysis of wood Ecosystem Service (ES) potential, supply, and demand across Europe between 2008 and 2018. This dataset was used for the analysis of temporal trends of wood ES in the study "Mapping temporal variations in ecosystem services: a case study of European wood supply and demand between 2008 and 2018".

The data are collected and compiled from open access statistical databases. They consist of three parts:

1.     The PDF file with a detailed description of the data and all the input sources from which it was derived.

2.     The Zip file with 3 separate Excel files containing the short description of the indicators for mapping spatio-temporal changes, namely wood ES potential, wood ES supply and wood ES demand and their values between 2008 and 2018 at three different levels: continental, national and regional. Note that for the regional level only supply and demand indicators are available.

3.     The tiff file representing the spatial resolution for visualisation and analysis of the data.

 

 

Resolution:

Data are available for 3 spatial levels, in the temporal dimension between 2008 and 2018 (annually). All 3 indicators are available at continental (European) and national scales. The study area covers 24 countries of the European Union (EU) and Switzerland. Supply and demand are also available at regional level. At the regional scale, we assessed supply and demand using the nomenclature of territorial units for statistics (NUTS 3; n = 1061) and local administrative units (LAU; n = 957) from the year 2016 (Eurostat, 2016). The visualisation of the resolution is available in the tiff file attached to the data.

The data are visualised and analysed in the ETRS 1989 LAEA projection.

 

For more information on the indicators used, data collection and processing, see the supplementary files of the published article.

 

 

DEFINITIONS of ES mapping indicators used in the study: 

ES potential - the hypothetical maximum yield of services potentially available for supply.

ES supply – the amount of the mobilized service within the ecosystem capable to provide a service at a given location in a certain time (frequently referred in literature as ES flow).

ES demand - the need for the ecosystem-based service by the end users. In this study demand is analysed from the perspective of service end-user.