cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26180951.v1
title: Replication Data for: Crafting Effective Messages: Language Appeals and Source Credibility in Amplifying Tobacco Control Messages on Social Media

description: Replication Data for the study titled "Crafting Effective Messages: Language Appeals and Source Credibility in Amplifying Tobacco Control Messages on Social Media."
DOI: 10.6084/m9.figshare.5313643.v1
title: v1.2 3D files.zip

description: 3D design file for printing
DOI: 10.6084/m9.figshare.16819165.v1
title: Supporting information for Cross-conjugation controls the stabilities and photophysical properties of heteroazoarene photoswitches

description: The optimized output files for the E and Z reactants, the Intrinsic Reaction Coordinate (IRC) calculations, and the transition state geometries of the four azoarenes presented in this study. All data here is present in zipped folder<br>
DOI: 10.6084/m9.figshare.24611100.v1
title: Supplementary Material for: Role of pre-surgical gut microbial diversity in Roux-en-Y gastric bypass weight-loss response: A cohort study

description: Introduction: Roux-en-Y gastric bypass substantially alters the gut microbial composition which could be associated with the metabolic improvements seen after surgery. Few studies have been conducted in Latin American populations, such as Mexico where obesity prevalence is above 30% in the adult population. Thus, the aim of this study was to characterize the changes in gut microbiota structure in a Mexican cohort before and after Roux-en-Y gastric bypass and to explore whether surgery-related changes in the microbial community were associated with weight loss.
Methods: Biological samples from patients who underwent Roux-en-Y gastric bypass were examined before and 12 months after surgery. Fecal microbiota characterization was performed through 16S rRNA sequencing. 
Results: Twenty patients who underwent Roux-en-Y gastric bypass showed a median excess weight loss of 66.8% 12 months after surgery. Surgery increased alpha diversity estimates (Chao, Shannon index and observed operational taxonomic units (OTUs), p&lt;0.05), and significantly altered gut microbiota composition. Abundance of four genera were significantly increased after surgery: Oscillospira, Veillonella, Streptococcus, and an unclassified genus from Enterobacteriaceae family (PFDR&lt;0.1). The change in Veillonella abundance was associated with lower excess weight loss (rho=-0.446, p=0.063) and its abundance post-surgery with a greater BMI (rho=0.732, P=5.4x10-4). In subjects without type 2 diabetes lower bacterial richness and diversity before surgery were associated with a greater Veillonella increase after surgery (p&lt;0.05), suggesting that a lower bacterial richness before surgery could favor the bloom of certain oral-derived bacteria that could negatively impact weight loss.
Conclusion: Pre-surgical microbiota profile may favor certain bacterial changes associated with less successful results.
DOI: 10.6084/m9.figshare.27175713.v3
title: Movie Genre Multi Label Classification

description: <pre>The data in this tutorial comes from a <i>*multi-label*</i> classification bot that categorizes movies into genres based on their names and short descriptions. For this use case, we have an evaluation set containing movies released before 2021, with their associated genres selected by movie critics, as well as production data containing movies released after 2021.</pre>
DOI: 10.6084/m9.figshare.11449482.v1
title: Three-dimensional anatomy of mesophyll cells in rice leaf tissue by serial section light microscopy

description: 2D sections of rice (<i>Oryza sativa</i> L.) mesophyll cells are complex and the cell interior contains a large volume of chloroplasts. Furthermore, the structure of chloroplasts changes in response to salt stress. In this study, we used a 3D reconstruction method based on serial section light microscopy to analyze a wide range of structures in leaf tissues and compared the intracellular structure of mesophyll cells of rice under normal and salt-treated conditions. The 3D reconstructed models revealed that mesophyll cells appeared as ellipsoid discs with several lobes around the cell periphery, with the volumes showing no significant difference between control and salt-treated plants. The chloroplast structure in the whole mesophyll cell was altered under salt stress, showing a reduced coverage area, whereas their volumes did not differ between treatments. These findings suggest that 3D reconstruction based on serial light micrographs can reveal the morphology of cells and chloroplasts in plant tissue.
DOI: 10.6084/m9.figshare.14405924.v3
title: Five Degree-of-Freedom Grain Boundary Interpolation

description: These are larger MATLAB .mat files required for reproducing plots from the sgbaird-5DOF/interp repository for grain boundary property interpolation. gitID-0055bee_uuID-475a2dfd_paper-data6.mat contains multiple trials of five degree-of-freedom interpolation model runs for various interpolation schemes. gpr46883_gitID-b473165_puuID-50ffdcf6_kim-rng11.mat contains a Gaussian Process Regression model trained on 46883 Fe simulation GBs.
DOI: 10.6084/m9.figshare.26411749.v1
title: Nagornyy Final PDF.pdf

description: Telegram feed of Russian youth leader Nikita Nagornyy, 2021-2022. Includes text and images, but not video. Downloaded from Telegram spring 2024.
DOI: 10.6084/m9.figshare.28259366.v1
title: <b>Is There a Simple Descriptor to Predict Laves Phases?</b>

description: Laves Phase: a compressed folder containing the inputs and outputs of binary and Solid Solution SISSO-DT calculation.<br>
DOI: 10.6084/m9.figshare.29095148.v1
title: Descripción general de la tarea de igualdades

description: Se presentan una serie de igualdades utilizadas para nuestra investigación las cuales contiene las características de sentido de la estructura, así como elementos conceptuales y procedimentales de cada uno de los problemas de nuestra investigación.
DOI: 10.6084/m9.figshare.7926740.v1
title: gVCF_HG02079

description: 1000 Genomes gVCF mapped to hs37d5 for HG02079. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17632/bj564xjfsc
title: Cost comparison of a sewage treatment plant unit by conventional method and BIM approach

description: Quantity estimate and cost analysis of a unit of Sewage treatment plant (STP) is done by manual method and with BIM automation. The components of the unit include inlet chamber, screen chamber (manual and automatic), grit chamber (manual and automatic) and distribution chamber. Construction specifications and unit rate are obtained from state schedule of rates for all the components of the STP unit. Non dimensional drawings of the STP are provided in pdf format for better visibility and excel sheets of quantity estimate is also provided.
DOI: 10.4121/uuid:ecea5d52-36a0-40dc-8f95-07e065a1b24c
title: Optimised control and pipe burst detection by water demand forecasting; case studies in six locations in the Netherlands

description: Water demand forecasting in addition to conventional control of water production and distribution results in a significant reduction of fluctuations in water production and distribution. A higher water quality and lower energy consumption are the main advantages. Pipe burst detection is made easier by comparing actual and forecasted water demand. The datasets contain measurements from six locations in the Netherlands. Documentation on the data can be found in the thesis ‘Optimised control and pipe burst detection by water demand forecasting’.
DOI: 10.6084/m9.figshare.28284869.v4
title: Datafile 0. Species selected according to the role of CO2 absorption present in scientific literature

description: Species selected according to the role of CO2 absorption present in scientific literature
DOI: 10.6084/m9.figshare.28594541.v2
title: <b>Additive effects of </b><b>multiple global change drivers on terrestrial nitrogen cycling</b><b> worldwide</b>

description: We found that the interactions of multiple GCFs were commonly additive (66.2%–83.3%), but both synergistic (10.5%–15.1%) and antagonistic (2.8%–18.9%) effects were also observed.Using Web of Science, Google Scholar and the China National Knowledge Infrastructure, we collected a total of 1722 observations from 108 peer-reviewed articles that reported changes in N cycling under experimental manipulations of warming (W) and other global change drivers, including increased precipitation (IP), decreased precipitation (DP), nitrogen addition (N), and elevated CO2 concentration (eCO2).We used a widely accepted bias-corrected method  to quantify individual effects and the combined effects of global change drivers on plant sequential phenophases (effect size: Hedges' g). The interactive effect and main effect for judging the interaction types of combined effect were calculated as Hedges' d.
DOI: 10.6084/m9.figshare.5950306.v4
title: Ant_Plant_Networks_Savanna.csv

description: Ant-plant interaction networks empirically sampled by us throughout the Neotropical Cerrado savanna <br>
DOI: 10.6084/m9.figshare.10025006.v2
title: Accurately estimating global wheat yields at 4-km resolution during 1982-2020 (GlobalWheatYield4km)

description: This dataset offers annual time series data of 4km-grid yield estimates of spring and winter wheat worldwide for the period 1982-2020. *** The data file is in “.tif" format *** Temporal Resolution: Yearly *** Temporal coverage: 1982-2020 *** Pixel size: 4 km *** Pixel value: Yield of wheat (kg/ha) *** Projection information: EPSG: 3395
DOI: 10.6084/m9.figshare.22705192.v1
title: Carbon24

description: Please consider citing the following paper:<br> <br> ```<br> @misc{carbon2020data,<br> doi = {10.24435/MATERIALSCLOUD:2020.0026/V1},<br> url = {https://archive.materialscloud.org/record/2020.0026/v1},<br> author = {Pickard, Chris J.},<br> keywords = {DFT, ab initio random structure searching, carbon},<br> language = {en},<br> title = {AIRSS data for carbon at 10GPa and the C+N+H+O system at 1GPa},<br> publisher = {Materials Cloud},<br> year = {2020},<br> copyright = {info:eu-repo/semantics/openAccess}<br> }<br> ```
DOI: 10.6084/m9.figshare.3403489.v3
title: dental CBCT data

description: <br> These datasets were obtained using the dental CBCT imaging system ZCB100 (Shenzhen ZhongKe TianYue Technology Co., Ltd.).
DOI: 10.6084/m9.figshare.21153352.v1
title: Mitochondrial metabolism and body condition of naturally infected sunfish (Lepomis gibbosus)

description: All data associated with the four tested enzymes (CCO - cytochrome c oxidase, CPT - carnitine palmitoyltransferase, CS - citrate synthase and ETS - electron transport system) with morphological information on each fish used in this study (n=22) and parasite densities (cestodes and trematodes). Enzymatic activities were collected by spectrophotometry. Fish collection was made through Université de Montréal comité de déontologie de l'expérimentation sur les animaux (protocol number 21-028) and collection permits granted by the ministère des forêts de la faune et des parcs (SEG#2021-05-18-1833-15SP).
DOI: 10.6084/m9.figshare.21358017.v1
title: Data underlying the manuscript: Self-mixing in microtubule-kinesin active fluid from nonuniform to uniform distribution of activity

description: This database presents the data used in the manuscript: Self-mixing in microtubule-kinesin active fluid from nonuniform to uniform distribution of activity (Bate et al. <em>Nat Commun</em> <strong>13</strong>, 6573 [2022]). This database contains two sets of data: (1) images of tracer particles suspended in active-inactive fluid systems and (2) images of fluorescein suspended in active-inactive fluid systems. Each data set is provided with associated analysis script for demonstrating the process of extracting mixing-related parameters from the data, such as interface progression exponents, interface progression coefficients and mixing times. <strong>The first data set</strong> contains 4 files: Data1.zip, analysis1.m, Mask.tif, and Tracking.mat. Data1.zip contains 1 hour of frame-by-frame tracer data from an individual experiment in the [cATP] sweep in Fig. 2c of the manuscript, for the sample with 5 mM caged ATP. The tracers are tracked using the tracking software developed by Ouellette et al. (Experiments in Fluids <strong>40</strong>, 301-313 [2005]) and the tracking results are output in Tracking.mat, which can be subsequently imported to MATLAB by running analysis1.m (requiring MATLAB Curve Fitting Toolbox, Image Processing Toolbox and Parallel Computing Toolbox). The script outputs the interface progression exponents and interface progression coefficient of this data set. The script also allows for analyzing a specific region of interest defined as the black pixels in Mask.tif. In this analysis, the region of interest is set to be the entire image. <strong>The second data set</strong> contains 2 files: Data2.zip and analysis2.m. Data2.zip contains 1 hour of frame-by-frame fluorescein data from an individual experiment in the fluorescein sweep in Fig. 5 of the manuscript. The sample contains 3.2 mM caged ATP, 3 µM caged fluorescein, 80 nM K365 dimers and the sample height is 100 µm. This experiment is designed to probe the mixing time of suspended fluorescein in the active fluid system. To extract the mixing time, Data2.zip needs to be unzipped and analysis2.m needs to be run in MATLAB (requiring MATLAB Curve Fitting Toolbox and Image Processing Toolbox), which will read the fluorescein images to analyze the multiscale norm and output the mixing time.
DOI: 10.6084/m9.figshare.24874279.v1
title: example_calls_per_individual.zip from Vocal complexity in a socially complex corvid: gradation, diversity and lack of common call repertoire in male rooks

description: Vocal communication is widespread in animals, with vocal repertoires of varying complexity. The social complexity hypothesis predicts that species may need high vocal complexity to deal with complex social organization (e.g. have a variety of different interindividual relations). We quantified the vocal complexity of two geographically distant captive colonies of rooks, a corvid species with complex social organization and cognitive performances, but understudied vocal abilities. We quantified the diversity and gradation of their repertoire, as well as the inter-individual similarity at the vocal unit level. We found that males produced call units with lower diversity and gradation than females, while song units did not differ between sexes. Surprisingly, while females produced highly similar call repertoires, even between colonies, each individual male produced almost completely different call repertoires from any other individual. These findings question the way male rooks communicate with their social partners. We suggest that each male may actively seek to remain vocally distinct, which could be an asset in their frequently changing social environment. We conclude that inter-individual similarity, an understudied aspect of vocal repertoires, should also be considered as a measure of vocal complexity.
DOI: 10.6084/m9.figshare.25533964.v1
title: Logistic regression codbook.xlsx

description: <b>Abstract</b><b>Background:</b> Vulnerable populations experience exacerbated mental health issues due to their social circumstances, further exacerbated by the COVID-19 pandemic. Therefore, the aim of this study was to investigate self-perceived mental health and social inequality among individuals residing in Brazilian slum and urban communities during the COVID-19 pandemic.<b>Methods:</b> This was a cross-sectional, descriptive-analytical study. A validated instrument was used, administered by equally trained field interviewers. Descriptive analyses and binary logistic regression were conducted to identify clinical and sociodemographic variables associated with self-perceived mental health.<b>Results:</b> A total of 1,319 individuals residing in Brazilian slum and urban communities participated in the study. Through binary logistic regression, it was observed that individuals with informal employment, earning less than a minimum wage, reported poorer mental health status. They were also more likely to feel sadder, more discouraged, and more overwhelmed. Additionally, there was an increase in cigarette consumption and antidepressant use. In conclusion, the results revealed an association between informal employment, low income, and adverse mental health outcomes.<b>Conclusions:</b> Addressing mental health disparities in this demographic group is crucial for implementing and planning specific interventions for this population, such as improving job security and providing mental health support services
DOI: 10.6084/m9.figshare.29123420.v1
title: all_genes_expression_of_diapause_silkworm

description: This part of the table shows the gene expression patterns of diapause silkworm embryos and larvae that were congenitally infected with N. bombycis, and the gene expression patterns of N. bombycis in diapause silkworm embryos and larvae.
DOI: 10.17632/nsb5sgm964
title: Data for: Theoretical realization of two-dimensional M3(C6X6)2(M= Co, Cr, Cu, Fe, Mn, Ni, Pd, Rh and X= O, S, Se) metal-organic frameworks

description: The energy minimized atomic lattices in the VASP POSCAR format and PAW potentials in the VASP POTCAR format
DOI: 10.6084/m9.figshare.22699759.v1
title: A geospatial database of close to reality travel times to obstetric emergency care in 15 Nigerian conurbations

description: A database of travel times to facilities that can provide comprehensive EmOC in the 15 most populated extended urban areas (conurbations) in Nigeria. The travel times from cells of approximately 0.6x0.6km to facilities were derived based on Google Maps Platform’s internal Directions Application Programming Interface (API). The API incorporates estimates of traffic to provide closer-to-reality estimates of travel time. Computations were done to the first, second and third nearest public or private facilities. Travel time for eight traffic scenarios (including peak and non-peak periods) and the number of facilities within specific time thresholds were estimated. The database offers a plethora of opportunities for research and planning towards improving EmOC accessibility.
DOI: 10.6084/m9.figshare.26795347.v1
title: Supplementary Material for: JAK 2 positive diseases and spontaneous coronary artery dissection (SCAD): Case Series

description: Introduction
Chronic myeloproliferative neoplasms such as polycythaemia vera (PV) and essential thrombocytosis (ET) are associated with atherosclerosis and cardiovascular events. Especially if JAK2 mutation is there. In rare cases, also spontaneous coronary artery dissection (SCAD) can be seen. 
Case Presentation
This case series describe two case reports of myeloproliferative neoplasms in which spontaneous coronary artery dissection (SCAD) was found in both of them in addition to standard atherosclerosis. First one was about a 42-year-old man who was admitted as acute myocardial infarction (MI) then found to have polycythaemia vera and SCAD. The second one was about a 52-year-old man, also admitted as acute MI, then found to have SCAD and essential thrombocythemia. JAK2V617F missense mutation was found in both cases. 
Conclusion
Myeloproliferative neoplasms with JAK2 mutations are associated with spontaneous coronary artery dissection in addition to usual atherosclerosis. This association needs further research.
DOI: 10.6084/m9.figshare.6818774.v1
title: Experiment 5F-SubjectC-160429-5St-SGLHand-HFREQ

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using higher sampling rate setting of 1000 Hz.
DOI: 10.6084/m9.figshare.7789616.v1
title: flanker cnt data

description: The cnt files for the flanker task.
DOI: 10.6084/m9.figshare.12167529.v1
title: ActDES – a Curated Actinobacterial Database for Evolutionary Studies

description: The Actinobacteria are a large diverse phylum of bacteria, often with large genomes with a high G+C content. There is great variation in the sequence quality, equivalence of annotation and phylogenetic representation in the sequence databases meaning that evolutionary and phylogenetic studies may be challenging. To address this, we have assembled a curated, high-level, taxa specific, non-redundant database to aid detailed comparative analysis of Actinobacteria. ActDES constitutes a novel resource for the community of Actinobacterial researchers that will be useful primarily for two types of analyses: (i) comparative genomic studies - facilitated by reliable orthologs identification across a set of defined, phylogenetically representative genomes, and (ii) phylogenomic studies which will be improved by identification of gene subsets at specified taxonomic level. These studies can then act as a springboard for the study of the evolution of virulence genes, studying the evolution of metabolism and metabolic engineering target identification. <br>Data summary All genome sequences used in this study can be found in the NCBI taxonomy browser https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi and are summarised along with Accession numbers in Table S1<br>1. All other data is available on Figshare.<br>a. Perl script files<br>b. List of genomes from NCBI (Actinobacteria database.xlsx) Table S1<br>c. CVS genome annotation files including the FASTA files of nucleotide and amino acids sequences (612 individual .cvs files – folder cvs)<br>d. BLAST nucleotide database (.fasta file)<br>e. BLAST protein database (.fasta file)<br>f. Table S2 Expansion table genus level (Expansion table.xlsx Tab Genus level)<br>g. Table S2 Expansion table species level (Expansion table.xlsx Tab species level)<br>h. All data for GlcP and Glk data – blast hits from ActDES database, MUSCLE Alignment files and .nwk tree files
DOI: 10.6084/m9.figshare.17989979.v2
title: DISPERSION_DATA.txt

description: The first column in this data file represents Frequencies, the second column is for phase velocities, the third and fifth columns represent the station pair latitudes, the fourth and sixth columns represent the station pair longitudes, the seventh column is the station pair number.
DOI: 10.6084/m9.figshare.20229678.v2
title: Common Ringed Plover trackway – 3D model and photographs for photogrammetry

description: 3D model of a trackway of the Common Ringed Plover (Charadrius hiaticula), observed in June 2022 on Ross Beach, Northumberland, England.
DOI: 10.6084/m9.figshare.27256590.v1
title: <b>Quantifying regime transition of mineral precipitation in a microfluidic fracture</b>

description: Datasets for the manuscript "<b>Quantifying regime transition of mineral precipitation in a microfluidic fracture</b>" by Chen et al.
DOI: 10.6084/m9.figshare.6913616.v1
title: Microbiome and stress: examining host-microbe responses in ascidians following acute low salinity exposure

description: My unsuccessful (awarded Honorable Mention) NSF Graduate Research Fellowship Program application and reviews from 2016.
DOI: 10.6084/m9.figshare.c.3803629_d5.v1
title: Additional file 5: of Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification

description: Sequence capture probes. Full data associated with the 1293 sequence probes used to capture a genome-wide dataset of ohnologues across 15 salmonid species, including: (i) NCBI accession and encoded protein product for each sequence capture probe, (ii) the salmonid species from which each probe sequence was taken, (iii) ‘Probe status’, where ‘Singleton’ means only a single gene duplicate was included in the probe set, even if other duplicates were identified and ‘Duplicate’ means both gene duplicates were present in the probe set, and (iv) ‘Selection status’, where ‘Pre-selected’ means the sequence capture probe was selected a priori and ‘Selected randomly’ means the genes were chosen at random. (XLSX 588 kb)