cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.u4rb3h
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Chlamydomonas reinhardtii P.A.Dang."
 ]
}

 The dataset includes 107 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001226-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.st2ytu
title: Occurrence Download

description: A dataset containing 10576 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Cordyceps militaris (L.) Fr."
 ]
}

 The dataset includes 10576 records from 249 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001227-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uwuxnk
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Wallemia ichthyophaga Johan-Olsen"
 ]
}

 The dataset includes 78 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001228-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qrrvq6
title: Occurrence Download

description: A dataset containing 246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Filobasidium floriforme L.S.Olive"
 ]
}

 The dataset includes 246 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001229-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ah2rq
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Candida dubliniensis D.J.Sullivan, Western., K.A.Haynes, Dés.E.Benn. & D.C.Coleman"
 ]
}

 The dataset includes 34 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001230-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14875718
title: Human Gait Dataset for Biometric Authentication

description: The Human Gait Dataset for Biometric Authentication consists of gait patterns collected from 87 individuals across multiple sessions using smartphone motion sensors. Each participant contributed data in two sessions, with three repetitions per session, and each session lasted approximately 1:30 minutes. The dataset was recorded using a self-developed web-based application, capturing a wide range of sensor-based features, including accelerometer, gyroscope, and rotation sensor data, along with demographic details such as gender, age, handedness, and educational qualification. The dataset includes linear acceleration measurements in the x, y, and z axes, rotational movement data from the gyroscope, gravitational force readings, and device orientation angles (Alpha, Beta, Gamma). These features provide valuable insights into gait-based authentication, making this dataset useful for developing biometric authentication systems, machine learning-based anomaly detection models, healthcare applications such as fall detection and rehabilitation analysis, and security applications for continuous authentication. The structured collection of gait data across multiple sessions ensures variability and robustness, allowing researchers to explore authentication strategies that leverage human movement patterns.
DOI: 10.5281/zenodo.14875719
title: Human Gait Dataset for Biometric Authentication

description: The Human Gait Dataset for Biometric Authentication consists of gait patterns collected from 87 individuals across multiple sessions using smartphone motion sensors. Each participant contributed data in two sessions, with three repetitions per session, and each session lasted approximately 1:30 minutes. The dataset was recorded using a self-developed web-based application, capturing a wide range of sensor-based features, including accelerometer, gyroscope, and rotation sensor data, along with demographic details such as gender, age, handedness, and educational qualification. The dataset includes linear acceleration measurements in the x, y, and z axes, rotational movement data from the gyroscope, gravitational force readings, and device orientation angles (Alpha, Beta, Gamma). These features provide valuable insights into gait-based authentication, making this dataset useful for developing biometric authentication systems, machine learning-based anomaly detection models, healthcare applications such as fall detection and rehabilitation analysis, and security applications for continuous authentication. The structured collection of gait data across multiple sessions ensures variability and robustness, allowing researchers to explore authentication strategies that leverage human movement patterns.
DOI: 10.15468/dl.332dpq
title: Occurrence Download

description: A dataset containing 224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Berosus guttalis Rey, 1883"
 ]
}

 The dataset includes 224 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001231-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tbqrgz
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Aspergillus alliaceus Thom & Church"
 ]
}

 The dataset includes 10 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001232-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gyd6g9
title: Occurrence Download

description: A dataset containing 434 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Rhizophagus irregularis (Błaszk., Wubet, Renker & Buscot) C.Walker & A.Schüssler"
 ]
}

 The dataset includes 434 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001233-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.webrm9
title: Occurrence Download

description: A dataset containing 3134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Musa acuminata Colla"
 ]
}

 The dataset includes 3134 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001234-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cpvwcw
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Nymphaea colorata Peter"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001235-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4q6d8x
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Penicillium canariense S.W.Peterson & Sigler"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001236-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sgpxh5
title: Occurrence Download

description: A dataset containing 5600 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Azolla filiculoides Lam.",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 5600 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001238-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xgcjwe
title: Occurrence Download

description: A dataset containing 77583 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Schizophyllum commune Fr."
 ]
}

 The dataset includes 77583 records from 465 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001237-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c2seu4
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crocidura suaveolens",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 94 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039592-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6xdy9k
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crocidura suaveolens",
 "Country is Cyprus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039591-250920141307145/datasets/export for details.
DOI: 10.15468/dl.2sn9js
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crocidura suaveolens",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 113 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039593-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57837/actris-ares/hs4p-s598
title: Stratospheric smoke observations over Haifa performed during 2017/2018 and observed by EARLINET network

description: This dataset provides stratospheric smoke observations over Haifa performed during 2017/2018 using a PollyXT multi-wavelength Raman and polarization lidar and observed by EARLINET network. The measurements were funded by the German-Israeli Foundation, with additional support from the Norman and Helen Asher Fund and the Ollendorff Minerva Center.
DOI: 10.5284/1133072
title: Digital Archive from an Archaeological Evaluation at 63 Rectory Road, Stisted, Essex, February 2021

description: This collection comprises image, text and CAD data from an archaeological evaluation (four trial-trenches) which was carried out on land north of 63 Rectory Road, Stisted, Essex, CM77 8AL. The work was undertaken by Colchester Archaeological Trust in advance of the construction of three new dwellings in February 2021. Located within the historic village of Stisted, which is likely of medieval origin, the evaluation revealed two phases of activity on the development site. The first dates to prehistoric period with two pits containing Bronze Age pottery and a quantity of heat-altered (burnt) stone. The second dates to the later medieval period with three ditches, a gully or plough scar and pit producing pottery sherds of 12th to 14th century date.
DOI: 10.15468/dl.wb6xay
title: Occurrence Download

description: A dataset containing 4451 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Myrmica scabrinodis"
 ]
}

 The dataset includes 4451 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039594-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25403/upresearchdata.29678426
title: Young adult’s reflections on their experiences of social media use during adolescence

description: In the digital age, social media has become an integral part of adolescents’ lives, shaping their behaviours, identities, and interactions. Social media use is associated with both advantages and risks. The goal of the study was to explore the experiences of social media use during adolescence through the reflections of a sample of young adults living in Pretoria, Gauteng, to provide insight into the phenomenon. The objectives were to theoretically conceptualise social media and to contextualise it within the South African context; to explore and describe participants’ use of social media during their adolescent years; to explore and describe the participants’ perceptions of positive and negative influences of social media use on them during adolescence; to obtain suggestions from the participants on promoting optimal use of social media by adolescents; and to obtain the participants’ suggestions for curbing the harmful effects of social media on adolescents. The research question that guided the research was: What are young adults’ reflections on their experiences of social media during adolescence?An interpretivist paradigm and qualitative research approach was adopted to gain a rich understanding of the participants’ perceptions of the phenomenon. Following an instrumental case study design, purposive and snowball sampling were used to recruit participants who could provide information to achieve the goal and objectives of the study.
DOI: 10.25403/upresearchdata.29678426.v1
title: Young adult’s reflections on their experiences of social media use during adolescence

description: In the digital age, social media has become an integral part of adolescents’ lives, shaping their behaviours, identities, and interactions. Social media use is associated with both advantages and risks. The goal of the study was to explore the experiences of social media use during adolescence through the reflections of a sample of young adults living in Pretoria, Gauteng, to provide insight into the phenomenon. The objectives were to theoretically conceptualise social media and to contextualise it within the South African context; to explore and describe participants’ use of social media during their adolescent years; to explore and describe the participants’ perceptions of positive and negative influences of social media use on them during adolescence; to obtain suggestions from the participants on promoting optimal use of social media by adolescents; and to obtain the participants’ suggestions for curbing the harmful effects of social media on adolescents. The research question that guided the research was: What are young adults’ reflections on their experiences of social media during adolescence?An interpretivist paradigm and qualitative research approach was adopted to gain a rich understanding of the participants’ perceptions of the phenomenon. Following an instrumental case study design, purposive and snowball sampling were used to recruit participants who could provide information to achieve the goal and objectives of the study.
DOI: 10.15468/dl.cmfeec
title: Occurrence Download

description: A dataset containing 1427 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "GadmGid is NLD.9.21_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus"
 ]
}

 The dataset includes 1427 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039595-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zmvkww
title: Occurrence Download

description: A dataset containing 4937 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Geometry POLYGON((-2.206882 52.347725, -1.423937 52.347725, -1.423937 52.662717, -2.206882 52.662717, -2.206882 52.347725))",
 "Year is 2010,2025",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Muscardinus avellanarius, Myotis bechsteinii, Sciurus vulgaris, Myodes glareolus, Meles meles, Vulpes vulpes, Dama dama, Barbastella barbastellus, Apodemus sylvaticus, Plecotus auritus)"
 ]
}

 The dataset includes 4937 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039596-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17250212
title: Sled test main document
DOI: 10.15468/dl.4upwyh
title: Occurrence Download

description: A dataset listing the 3979 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((15.66072 37.82909,17.19346 37.82909,17.19346 39.94653,15.66072 39.94653,15.66072 37.82909))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset's 3979 records were derived from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039572-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwx2bn
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crocidura suaveolens",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 42 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039598-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f5ehvd
title: Occurrence Download

description: A dataset containing 560 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudohemiculter Nichols & Pope, 1927"
 ]
}

 The dataset includes 560 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014612-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15804876
title: Supplementary data for "New Targets and Procedures for Validating the Valence Geometry of Nucleic Acid Structures"

description: This repository contains data and code accompanying the paper "New Targets And Procedures For Validating The Valence Geometry Of Nucleic Acid Structures" by Černý et al. The files are as follows:



pdb_na_reference_set.zip- the complete PDB-NA Reference Set

zprime_thresholds.zip - thresholds for the weighted asymmetric non-parametric standard score (Z')

restraints_in literature_and_refinement_software.xlsx - listing of geometrical restraints for nucleic acid bond lengths and angles found in the literature and refinement programs

filtering_and_prosco_code.zip - the code for filtering the PDB-NA Reference Set and for calculating the probability percentile score (ProSco)

residues_removed_after_expert_inspection.csv - list of residues excluded from the PDB-NA Reference Set after manual inspection

prosco_json.zip - ProSco values in JSON format for all analyzed bond lengths and angles


 

Additional information about the "filtering_and_prosco_code.zip" file:

The "filtering" directory contains scripts and data for quality filtering of non-redundant DNA and RNA residues forming the "PDB NA Reference Set".

"rcsb_all_DNA+RNA_within_3.5A_xray_with_data.txt" - list of DNA and RNA xray PDB structures within 3.5A crystallographic resolution where experimental data are available. This was obtained by an Advanced Search query with the mentioned parameters at rscb.org web site.

The scripts in the expected order of calling:



"validation_xml2json" - Converting the xml-formatted PDB validation reports from XML format to JSON.

"graphQL_GET_protein_clusters" - The script queries the https://data.rcsb.org/graphql endpoint for details about biomolecular chains contained in the list of xray structure. The "rcsb_DNA+RNA_graphQL.json" file with the requested data is generated.

"make_non_redundant_DNA.py" and "make_non_redundant_RNA.py" - Identification of DNA and RNA sequence clusters in complexes with proteins and naked NAs.

"calculate_scores_single_res.py" - Adding the quality score for each NA chain.

"process_non_redundant" - Compiles the set of highest quality non-redundant NA chains.


The "naval" directory contains a C++ re-implementation of the python-based annotation code (https://github.com/mkowiel/nucleic-acid-validation.git).The C++ program depends on the "libLLKA" library used at the https://dnatco.datmos.org web service. The source code is available from https://github.com/cernylab/libLLKA.git repository.

The code processes the structures from "filtering" step, measures the bond lengths and angles and returns an intermediate classification. Only the CSD-related classes are used further for the final composite validation tier (combining the ProSco, CSD, and Z' scores).

The "prosco" directory contains the R script and auxiliary shell scripts for (re)calculation of the *_prosco.json files. It uses the "naval" annotated csv files from "pdb_na_reference_set.zip" as the input.
DOI: 10.6084/m9.figshare.30164326
title: ARRIVE Guidelines

description: This file shows the ARRIVE Guidelines for the author checklist.
DOI: 10.6084/m9.figshare.30164326.v1
title: ARRIVE Guidelines

description: This file shows the ARRIVE Guidelines for the author checklist.
DOI: 10.15468/dl.9gsa49
title: Occurrence Download

description: A dataset containing 11744006 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "Country is Belgium",
 "GadmGid is BEL.2_1",
 "TaxonKey is Aves",
 "Year 2012-2022"
 ]
}

 The dataset includes 11744006 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039557-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mq8mqf
title: Occurrence Download

description: A dataset containing 117638239 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Observation.org, Nature data from around the World"
 ]
}

 The dataset includes 117638239 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039537-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.