DOI: 10.22002/4w90e-sfj96
title: Treponema primitia

description: Treponema primitia   The rest of the files are in ~/Images/050811
description: <strong>Tilt Series Date:</strong> 2005-08-11</p>
<strong>Data Taken By:</strong> Gavin Murphy</p>
<strong>Species / Specimen:</strong> Treponema primitia</p>
<strong>Strain:</strong> ZAS-2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 30.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod, bsoft</p>
<strong>Collaborators and Roles:</strong> Cells provided by Eric Matson, Jared Leadbetter; Data collected and processed by Gavin Murphy</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown in standard media around exponential growth.  Removed from anaerobic tube with syringe.  Directly applied to grids, no centrifugation</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity...</p>
  T4_050811_rec.jpg: file associated to 3D Image #12 GrantReview_050811T4_tip3D.jpg: file associated to 3D Image #12 Sized_length1.jpg: file associated to 3D Image #12 Sized_length2.jpg: file associated to 3D Image #12 Sized_length3.jpg: file associated to 3D Image #12 Sized_View1.jpg: file associated to 3D Image #12 Sized_View2.jpg: file associated to 3D Image #12 slicer000.jpg: file associated to 3D Image #12 slicer001.jpg: file associated to 3D Image #12 slicer002.jpg: file associated to 3D Image #12 slicer003.jpg: file associated to 3D Image #12 slicer004.jpg: file associated to 3D Image #12 slicer005.jpg: file associated to 3D Image #12 T4Iso350.jpg: file associated to 3D Image #12 Test.jpg: file associated to 3D Image #12 GrantReview_050811T4tip.jpg: file associated to 3D Image #12
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-4/rawdata/</p>T4a_S497G2_22k18d110e.mrc,  Tilt Series (Pixel Size 0.98 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-4/rawdata/T4a_S497G2_22k18d110e.mrc"
        > <i class="download icon"></i> Download </a></p>

        T4B2s.mrc,  Reconstruction (Pixel Size 0.0 nm), 394.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-4/3dimage_11/T4B2s.mrc"
        > <i class="download icon"></i> Download </a></p>

        T4B2PadRotSiz.mrc,  Reconstruction (Pixel Size 0.0 nm), 192.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-4/3dimage_12/T4B2PadRotSiz.mrc"
        > <i class="download icon"></i> Download </a></p>

        T4B2sBB_28_partTrn.pif,  Reconstruction (Pixel Size 0.0 nm), 704.0 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-4/3dimage_13/T4B2sBB_28_partTrn.pif"
        > <i class="download icon"></i> Download </a></p>

        GrantReview_050811T4_tip3D.tif,  file associated to 3D Image #12, 1.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-4/file_19/GrantReview_050811T4_tip3D.tif"
        > <i class="download icon"></i> Download </a></p>

        Sized_length1.tif,  file associated to 3D Image #12, 223.3 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-4/file_20/Sized_length1.tif"
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        Sized_length2.tif,  file associated to 3D Image #12, 221.0 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-4/file_21/Sized_length2.tif"
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        Sized_length3.tif,  file associated to 3D Image #12, 210.7 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-4/file_22/Sized_length3.tif"
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        Sized_View1.tif,  file associated to 3D Image #12, 278.2 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-4/file_23/Sized_View1.tif"
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        Sized_View2.tif,  file associated to 3D Image #12, 252.6 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-4/file_24/Sized_View2.tif"
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        slicer000.tif,  file associated to 3D Image #12, 624.1 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-4/file_25/slicer000.tif"
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        slicer001.tif,  file associated to 3D Image #12, 624.1 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-4/file_26/slicer001.tif"
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        slicer002.tif,  file associated to 3D Image #12, 122.0 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-4/file_27/slicer002.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer003.tif,  file associated to 3D Image #12, 3.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-4/file_28/slicer003.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer004.tif,  file associated to 3D Image #12, 1.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-4/file_29/slicer004.tif"
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        slicer005.tif,  file associated to 3D Image #12, 2.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-4/file_30/slicer005.tif"
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        T4Iso350.tif,  file associated to 3D Image #12, 1.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-4/file_31/T4Iso350.tif"
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        Test.tif,  file associated to 3D Image #12, 39.6 kB  
        
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        GrantReview_050811T4tip.tif,  file associated to 3D Image #12, 1.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-4/file_33/GrantReview_050811T4tip.tif"
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