cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0189295.10fu
title: SH0189295.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0189296.10fu
title: SH0189296.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.26611409.v1
title: Additional file 1 of Does implant drill design influence the accuracy of dental implant placement using static computer-assisted implant surgery? An in vitro study

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26611409
title: Additional file 1 of Does implant drill design influence the accuracy of dental implant placement using static computer-assisted implant surgery? An in vitro study

description: Supplementary Material 1
DOI: 10.15468/dl.7nxht7
title: Occurrence Download

description: A dataset containing 2560 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Dendropsophus molitor (Schmidt, 1857)"
 ]
}

 The dataset includes 2560 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067581-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cp3tgg
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.569378 -32.764494, 148.569378 -32.771231, 148.573869 -32.771231, 148.573869 -32.766739, 148.576115 -32.766739, 148.576115 -32.764494, 148.569378 -32.764494)), ((148.573869 -32.771231, 148.573869 -32.773477, 148.569378 -32.773477, 148.569378 -32.775723, 148.580607 -32.775723, 148.580607 -32.771231, 148.573869 -32.771231)))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067582-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26611385
title: Additional file 4 of A novel super-enhancer-related gene signature predicts prognosis and immune microenvironment for breast cancer

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.26611379.v1
title: Additional file 2 of A novel super-enhancer-related gene signature predicts prognosis and immune microenvironment for breast cancer

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26611376.v1
title: Additional file 1 of A novel super-enhancer-related gene signature predicts prognosis and immune microenvironment for breast cancer

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26611385.v1
title: Additional file 4 of A novel super-enhancer-related gene signature predicts prognosis and immune microenvironment for breast cancer

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.26690521
title: Additional file 1 of Introgressions lead to reference bias in wheat RNA-seq analysis

description: Additional file 1: Table S1. Number of genes correctly quantified, underestimated, and overestimated from simulated RNA-Seq data, using Kallisto with the Chinese Spring reference, STAR with the Chinese Spring reference, or kallisto with the pantranscriptome reference. Table S2. Percentage of triads classified in each expression category from simulated RNA-Seq data, using Kallisto with the Chinese Spring reference, STAR with the Chinese Spring reference, or kallisto with the pantranscriptome reference. Table S3. Accessions from the He et al. [11] dataset that do and do not contain the chr1D introgression. Table S4. Expression values for genes within the chr1D introgression for accessions from the He et al. [11] dataset, using either the Chinese Spring or the pantranscriptome reference. Accessions are split based on whether or not they contain the chr1D introgression.
DOI: 10.6084/m9.figshare.26690521.v1
title: Additional file 1 of Introgressions lead to reference bias in wheat RNA-seq analysis

description: Additional file 1: Table S1. Number of genes correctly quantified, underestimated, and overestimated from simulated RNA-Seq data, using Kallisto with the Chinese Spring reference, STAR with the Chinese Spring reference, or kallisto with the pantranscriptome reference. Table S2. Percentage of triads classified in each expression category from simulated RNA-Seq data, using Kallisto with the Chinese Spring reference, STAR with the Chinese Spring reference, or kallisto with the pantranscriptome reference. Table S3. Accessions from the He et al. [11] dataset that do and do not contain the chr1D introgression. Table S4. Expression values for genes within the chr1D introgression for accessions from the He et al. [11] dataset, using either the Chinese Spring or the pantranscriptome reference. Accessions are split based on whether or not they contain the chr1D introgression.
DOI: 10.6084/m9.figshare.26611412
title: Additional file 1 of Complete mitochondrial genome of Agrostis stolonifera: insights into structure, Codon usage, repeats, and RNA editing

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26611415
title: Additional file 2 of Complete mitochondrial genome of Agrostis stolonifera: insights into structure, Codon usage, repeats, and RNA editing

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26611418
title: Additional file 3 of Complete mitochondrial genome of Agrostis stolonifera: insights into structure, Codon usage, repeats, and RNA editing

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26611400.v1
title: Additional file 9 of A novel super-enhancer-related gene signature predicts prognosis and immune microenvironment for breast cancer

description: Supplementary Material 9
DOI: 10.6084/m9.figshare.26611418.v1
title: Additional file 3 of Complete mitochondrial genome of Agrostis stolonifera: insights into structure, Codon usage, repeats, and RNA editing

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26611400
title: Additional file 9 of A novel super-enhancer-related gene signature predicts prognosis and immune microenvironment for breast cancer

description: Supplementary Material 9
DOI: 10.15468/dl.gqjnep
title: Occurrence Download

description: A dataset containing 330862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((103.5828 1.391133, 103.8591 1.391133, 103.8591 1.609529, 103.5828 1.609529, 103.5828 1.391133))",
 "Year is greater than or equal to 2000",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 330862 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067577-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ncat49
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.634506 -32.766739, 148.634506 -32.773477, 148.627769 -32.773477, 148.627769 -32.775723, 148.636752 -32.775723, 148.636752 -32.766739, 148.634506 -32.766739))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067583-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26611376
title: Additional file 1 of A novel super-enhancer-related gene signature predicts prognosis and immune microenvironment for breast cancer

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26611379
title: Additional file 2 of A novel super-enhancer-related gene signature predicts prognosis and immune microenvironment for breast cancer

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26611412.v1
title: Additional file 1 of Complete mitochondrial genome of Agrostis stolonifera: insights into structure, Codon usage, repeats, and RNA editing

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26611415.v1
title: Additional file 2 of Complete mitochondrial genome of Agrostis stolonifera: insights into structure, Codon usage, repeats, and RNA editing

description: Supplementary Material 2
DOI: 10.15468/dl.aaycth
title: Occurrence Download

description: A dataset containing 441 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Goura cristata (Pallas, 1764)"
 ]
}

 The dataset includes 441 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067584-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kmfsk9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.641243 -32.773477, 148.641243 -32.775723, 148.643489 -32.775723, 148.643489 -32.773477, 148.641243 -32.773477))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067585-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26611538.v1
title: Additional file 3 of Genomic exploration of coral-associated bacteria: identifying probiotic candidates to increase coral bleaching resilience in Galaxea fascicularis

description: Additional file 3.
DOI: 10.6084/m9.figshare.26611538
title: Additional file 3 of Genomic exploration of coral-associated bacteria: identifying probiotic candidates to increase coral bleaching resilience in Galaxea fascicularis

description: Additional file 3.
DOI: 10.6084/m9.figshare.26611535
title: Additional file 2 of Genomic exploration of coral-associated bacteria: identifying probiotic candidates to increase coral bleaching resilience in Galaxea fascicularis

description: Additional file 2.
DOI: 10.6084/m9.figshare.26611535.v1
title: Additional file 2 of Genomic exploration of coral-associated bacteria: identifying probiotic candidates to increase coral bleaching resilience in Galaxea fascicularis

description: Additional file 2.
DOI: 10.6084/m9.figshare.26611541.v1
title: Additional file 1 of Evaluating the long-term cost-effectiveness of fixed-ratio combination insulin degludec/liraglutide (IDegLira) versus other treatment regimens in the chinese type 2 diabetes patients

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26611544
title: Additional file 2 of Evaluating the long-term cost-effectiveness of fixed-ratio combination insulin degludec/liraglutide (IDegLira) versus other treatment regimens in the chinese type 2 diabetes patients

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26611547
title: Additional file 3 of Evaluating the long-term cost-effectiveness of fixed-ratio combination insulin degludec/liraglutide (IDegLira) versus other treatment regimens in the chinese type 2 diabetes patients

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26611541
title: Additional file 1 of Evaluating the long-term cost-effectiveness of fixed-ratio combination insulin degludec/liraglutide (IDegLira) versus other treatment regimens in the chinese type 2 diabetes patients

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26611589.v1
title: Additional file 2 of Expanding the genetic toolbox of Rhodotorula toruloides by identification and validation of six novel promoters induced or repressed under nitrogen starvation

description: Additional file 2. The master table Excel sheet with all annotations and differential expression results for each predicted ORF.
DOI: 10.6084/m9.figshare.26611592.v1
title: Additional file 3 of Expanding the genetic toolbox of Rhodotorula toruloides by identification and validation of six novel promoters induced or repressed under nitrogen starvation

description: Additional file 3. A multi-FASTA file containing the promoter sequences used in this study.
DOI: 10.15468/dl.ye7ydg
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.540802 -32.771231, 147.540802 -32.773477, 147.538556 -32.773477, 147.538556 -32.775723, 147.531819 -32.775723, 147.531819 -32.780214, 147.540802 -32.780214, 147.540802 -32.78246, 147.545294 -32.78246, 147.545294 -32.780214, 147.547539 -32.780214, 147.547539 -32.775723, 147.552031 -32.775723, 147.552031 -32.773477, 147.547539 -32.773477, 147.547539 -32.771231, 147.540802 -32.771231))"
 ]
}

 The dataset includes 54 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067586-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26573131.v1
title: Additional file 1 of scEvoNet: a gradient boosting-based method for prediction of cell state evolution

description: Additional file 1. The results of the GO term analysis using ShinyGO 0.77 on multiple gene lists obtained with scEvoNet.
DOI: 10.6084/m9.figshare.26690728
title: Additional file 1 of Impact of age, sex, and thyroid autoimmunity on the association between selenium intake and type 2 diabetes mellitus

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.26690728.v1
title: Additional file 1 of Impact of age, sex, and thyroid autoimmunity on the association between selenium intake and type 2 diabetes mellitus

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.26690731
title: Additional file 2 of Impact of age, sex, and thyroid autoimmunity on the association between selenium intake and type 2 diabetes mellitus

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.26690731.v1
title: Additional file 2 of Impact of age, sex, and thyroid autoimmunity on the association between selenium intake and type 2 diabetes mellitus

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.26690734.v1
title: Additional file 3 of Impact of age, sex, and thyroid autoimmunity on the association between selenium intake and type 2 diabetes mellitus

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.26690734
title: Additional file 3 of Impact of age, sex, and thyroid autoimmunity on the association between selenium intake and type 2 diabetes mellitus

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.26611544.v1
title: Additional file 2 of Evaluating the long-term cost-effectiveness of fixed-ratio combination insulin degludec/liraglutide (IDegLira) versus other treatment regimens in the chinese type 2 diabetes patients

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26611628.v1
title: Additional file 1 of MYC up-regulation confers vulnerability to dual inhibition of CDK12 and CDK13 in high-risk Group 3 medulloblastoma

description: Additional file 1: Supplementary Table 1. List of primers, siRNA and shRNA sequences used in this study.
DOI: 10.4121/f37fda03-61d7-4d2a-835f-30fbb63537b1.v1
title: Dataset of ISBA open loop states and ASCAT normalized backscatter and slope data of grid points

description: This dataset comprises open loop simulations of the ISBA land surface model and ASCAT normalized backscatter and slope data at grid points (GPIs) containing International Soil Moisture Network stations. The dataset covers the period from 2007 to 2019 and includes a total of 31 GPIs. The ISBA land surface model runs on the offline version of SURFEX software (https://www.umr-cnrm.fr/surfex/) using ERA5 forcing data. ASCAT normalized backscatter (“sig”) data are provided at 10am and 10pm every day. If normalized backscatter are not acquired at a particular time, a value of 999 is provided.ASCAT slope (“slop”) is calculated daily following Hahn et al. (2017). These daily values are provided at 10am in this dataset. The slope value at 10pm is set to 999.
DOI: 10.23729/13886a5e-b8b3-4b8e-b84d-b06e969db130
title: Tomograms from MEF cells (mitochondria)

description: Data includes ET tilt series and reconstructions from samples preprared on 17.1.2017 and 28.8.2013
Brendan Battersby, Paula Marttinen 

2017
Cultured MEF cells were grown on glass coverslips and then fixed with 2% glutaraldehyde in Na-phosphate buffer, pH 7.4, for 30 min RT. After fixing, the samples were washed 3× 2 min with Na-phosphate buffer, pH 7.4. The samples were then post-fixed with 1% osmium tetroxide for 1 h at room temperature, dehydrated with a graded series of ethanol, incubated with transitional solvent acetone, and finally embedded gradually in epoxy. Dual axis tilt series were recorded from one or consecutive semi-thick (230-250 nm) sections using Tecnai FEG 20 microscope operating at 200 kV. The sections were tilted at one-degree intervals using a high-tilt specimen holder between ±62°. Images were acquired with SerialEM software (using a 4 k × 4 k Ultrascan 4000 CCD camera at nominal magnification of 9,600× (5 and 6) or 11,500× (1 and 2). The alignment of the tilt series and reconstructions were done with IMOD software package using 10-nm colloidal gold particles as fiducial markers.

#1 SC siRNA
#2 SFG3L2 siRNA
#5 MT-ATP6m.9205delTA SC siRNA
#6 AFG3L2 siRNA

Richter U, Ng KY, Suomi F, Marttinen P, Turunen T, Jackson C, Suomalainen A, Vihinen H, Jokitalo E, Nyman TA, Isokallio MA, Stewart JB, Mancini C, Brusco A, Seneca S, Lombès A, Taylor RW, Battersby BJ. Mitochondrial stress response triggered by defects in protein synthesis quality control. Life Sci Alliance. 2019 Jan 25;2(1):e201800219. doi: 10.26508/lsa.201800219. PMID: 30683687; PMCID: PMC6348486.
Published online 2019 Jan 25

Fig. 5B and C, videos 1 and 2

Battersby 2016: 28.8.2013, actinonin and Ctrl (EtOH)
DOI: 10.15468/dl.kh9le5
title: Occurrence Download

description: A dataset containing 632 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pachymedusa dacnicolor (Cope, 1864)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 632 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004888-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3yysne
title: Occurrence Download

description: A dataset containing 34575 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Quercus pyrenaica Willd."
 ]
}

 The dataset includes 34575 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163280-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ttu2e7
title: Occurrence Download

description: A dataset containing 190 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Distribution of planktic foraminifera (125-250 µm) of sediment core PS1244-2"
 ]
}

 The dataset includes 190 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004888-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.24hgw2
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "EstablishmentMeans is one of (Native, NativeReintroduced)",
 "TaxonKey is Olea europaea L."
 ]
}

 The dataset includes 95 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163321-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5x3dra
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Streptocarpus modestus L.L.Britten",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004888-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uyvwa4
title: Occurrence Download

description: A dataset containing 1213 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dinophora spenneroides Benth."
 ]
}

 The dataset includes 1213 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021098-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mnjxd7
title: Occurrence Download

description: A dataset containing 1138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Egretta eulophotes (Swinhoe, 1860)"
 ]
}

 The dataset includes 1138 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000034-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.drtdqt
title: Occurrence Download

description: A dataset containing 1628 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Turdus infuscatus (Lafresnaye, 1844)"
 ]
}

 The dataset includes 1628 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004888-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.