cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ks5dxy
title: Occurrence Download

description: A dataset containing 31490 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The ATRAP project: citizens scientists reporting snail intermediate host occurrence in Uganda and the Democratic Republic of the Congo"
 ]
}

 The dataset includes 31490 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072203-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30560039
title: Supporting Data: Synthesis and Computational Analysis of Uranium(III)-Pnictogen Bonds

description: This repository contains the supporting data for the publication titled "Synthesis and Computational Analysis of Uranium(III)-Pnictogen Bonds" by Lauren M. Lopez, Diana Perales, Allison N. Smolek, Matthias Zeller, Bess Vlaisavljevich and Suzanne C. Bart. The manuscript associated with these data was published in J. Am. Chem. Soc. (DOI: 10.1021/jacs.5c19802). For readers only seeking the XYZ files associated with the publication, a second zipped folder called "coordinates.tgz" is included. The README.txt file describes the contents of the folder containing the input and output files.
DOI: 10.6084/m9.figshare.30560039.v1
title: Supporting Data: Synthesis and Computational Analysis of Uranium(III)-Pnictogen Bonds

description: This repository contains the supporting data for the publication titled "Synthesis and Computational Analysis of Uranium(III)-Pnictogen Bonds" by Lauren M. Lopez, Diana Perales, Allison N. Smolek, Matthias Zeller, Bess Vlaisavljevich and Suzanne C. Bart. The manuscript associated with these data was published in J. Am. Chem. Soc. (DOI: 10.1021/jacs.5c19802). For readers only seeking the XYZ files associated with the publication, a second zipped folder called "coordinates.tgz" is included. The README.txt file describes the contents of the folder containing the input and output files.
DOI: 10.6084/m9.figshare.30993772
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S02_Benchmarking_ControlGenomes

description: The table displayed showed the names and qualities of the genomes as described by CheckM.
DOI: 10.6084/m9.figshare.30993772.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S02_Benchmarking_ControlGenomes

description: The table displayed showed the names and qualities of the genomes as described by CheckM.
DOI: 10.6084/m9.figshare.30993805
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S03_KEGG-KO_CarbonFixation

description: The table described the KEGG KO rules used for the identification of carbon fixation pathways in the study.
DOI: 10.6084/m9.figshare.30993805.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S03_KEGG-KO_CarbonFixation

description: The table described the KEGG KO rules used for the identification of carbon fixation pathways in the study.
DOI: 10.5281/zenodo.18076116
title: Inhibition of stress resilience and adult hippocampal neurogenesis by platelet-derived LPA16:0 in anxiety.

description: Manuscript Source Data
DOI: 10.5281/zenodo.18076115
title: Inhibition of stress resilience and adult hippocampal neurogenesis by platelet-derived LPA16:0 in anxiety.

description: Manuscript Source Data
DOI: 10.6084/m9.figshare.30993850
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S04_RandPython_Packages

description: The table shows the list of R and Python packages used in the analysis.
DOI: 10.6084/m9.figshare.30993850.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S04_RandPython_Packages

description: The table shows the list of R and Python packages used in the analysis.
DOI: 10.15468/dl.6yv4qd
title: Occurrence Download

description: A dataset containing 1167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lutra lutra",
 "Country is Germany",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 2014-2024"
 ]
}

 The dataset includes 1167 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072204-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30993880
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S05_Genomes_CheckM_Output

description: The table shows the quality metrics of the genomes included in the study as defined by CheckM
DOI: 10.6084/m9.figshare.30993880.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S05_Genomes_CheckM_Output

description: The table shows the quality metrics of the genomes included in the study as defined by CheckM
DOI: 10.6084/m9.figshare.30993940
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S06_Genomes_Statistics_Output

description: The table shows the statistics of the genomes assembly included in this study as defined by BBTOOLs.<br>
DOI: 10.6084/m9.figshare.30993940.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S06_Genomes_Statistics_Output

description: The table shows the statistics of the genomes assembly included in this study as defined by BBTOOLs.<br>
DOI: 10.6084/m9.figshare.30993982
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S07_Genomes_GTDBTk_Taxonomy_Output

description: The table shows the taxonomic classification (as defined by GTDB-Tk) of the genomes included in the study.
DOI: 10.6084/m9.figshare.30993982.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S07_Genomes_GTDBTk_Taxonomy_Output

description: The table shows the taxonomic classification (as defined by GTDB-Tk) of the genomes included in the study.
DOI: 10.6084/m9.figshare.30993991
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S08_Genomes_OTU_Metadata_CheckM_GTDBTk_Taxonomy_Statistics

description: The table shows the metadata, quality, taxonomy and statistics of the genomes operational taxonomic units (OTUs)/Representatives included in the study.
DOI: 10.6084/m9.figshare.30993991.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S08_Genomes_OTU_Metadata_CheckM_GTDBTk_Taxonomy_Statistics

description: The table shows the metadata, quality, taxonomy and statistics of the genomes operational taxonomic units (OTUs)/Representatives included in the study.
DOI: 10.6084/m9.figshare.30994015
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S09_Univariate_GLM_Phylum_Depth

description: The tables shows the result for the univariate analysis of the phylum and depth association of the recovered MAGs in the study
DOI: 10.6084/m9.figshare.30994015.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S09_Univariate_GLM_Phylum_Depth

description: The tables shows the result for the univariate analysis of the phylum and depth association of the recovered MAGs in the study
DOI: 10.6084/m9.figshare.30994024
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S10_Univariate_GLM_Phylum_Salinity

description: The table show the result of the univariate analysis of the MAGs included in the stidy and their associations with the salinity gradient
DOI: 10.6084/m9.figshare.30994024.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S10_Univariate_GLM_Phylum_Salinity

description: The table show the result of the univariate analysis of the MAGs included in the stidy and their associations with the salinity gradient
DOI: 10.6084/m9.figshare.30994042
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S11_Univariate_GLM_Phylum_Temperature

description: The table shows the result for the Univariate analysis using GLM to define the association between phyla of the MAGs and the temperature of where the samples were collected.
DOI: 10.6084/m9.figshare.30994042.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S11_Univariate_GLM_Phylum_Temperature

description: The table shows the result for the Univariate analysis using GLM to define the association between phyla of the MAGs and the temperature of where the samples were collected.
DOI: 10.6084/m9.figshare.30994048
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S12_Univariate_GLM_Phylum_Ocean

description: The table show the result for the univariate analysis using GLM to highlight the asociation between the phyla of the MAGs and Oceans where the samples were collected.
DOI: 10.6084/m9.figshare.30994048.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S12_Univariate_GLM_Phylum_Ocean

description: The table show the result for the univariate analysis using GLM to highlight the asociation between the phyla of the MAGs and Oceans where the samples were collected.
DOI: 10.6084/m9.figshare.30994054
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S13_Correlation_Phylum_Depth

description: The table show the result for spearman correlation analysis of the phyla of the MAGs included in this study and the depth of the collected samples.
DOI: 10.6084/m9.figshare.30994054.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S13_Correlation_Phylum_Depth

description: The table show the result for spearman correlation analysis of the phyla of the MAGs included in this study and the depth of the collected samples.
DOI: 10.6084/m9.figshare.30994060
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S14_Correlatio_Phylum_Salinity

description: The table show the result for the Spearman correlation for the association of the phyla of the MAGs included in this study and the salinity of the environment where the samples were collected.
DOI: 10.6084/m9.figshare.30994060.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S14_Correlatio_Phylum_Salinity

description: The table show the result for the Spearman correlation for the association of the phyla of the MAGs included in this study and the salinity of the environment where the samples were collected.
DOI: 10.6084/m9.figshare.30994066
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S15_Correlation_Phylum_Temperature

description: The table show the result for the Spearman correlation for the association of the phyla of the recovered MAGs in the study and the temperature gradient.
DOI: 10.6084/m9.figshare.30994066.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S15_Correlation_Phylum_Temperature

description: The table show the result for the Spearman correlation for the association of the phyla of the recovered MAGs in the study and the temperature gradient.
DOI: 10.6084/m9.figshare.30994078
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S16_CarbonFixation_Annotation_Summary

description: The table shows the summary of the annotation of the carbon fixation pathway genes in the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994078.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S16_CarbonFixation_Annotation_Summary

description: The table shows the summary of the annotation of the carbon fixation pathway genes in the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994081
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S17_PresenceandAbsence_CarbonFixation_PathwaysinMAGs

description: The table show the result (Presence and Absence) for the annotation of the carbon fixation pathways in the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994081.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S17_PresenceandAbsence_CarbonFixation_PathwaysinMAGs

description: The table show the result (Presence and Absence) for the annotation of the carbon fixation pathways in the MAGs included in the study.
DOI: 10.15468/dl.zwwk98
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coffea dewevrei"
 ]
}

 The dataset includes 125 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072205-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30994105
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S18_PresenceandAbsence_CBB_GenesinMAGs

description: The table show the result (Presence and Absence) for anotation for the CBB pathway genes for the MAGs oncluded in the study
DOI: 10.6084/m9.figshare.30994105.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S18_PresenceandAbsence_CBB_GenesinMAGs

description: The table show the result (Presence and Absence) for anotation for the CBB pathway genes for the MAGs oncluded in the study
DOI: 10.6084/m9.figshare.30994114
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S19_PresenceandAbsence_rTCA_GenesinMAGs

description: The table show the result (presence and absence) of rTCA cycle genes in the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994114.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S19_PresenceandAbsence_rTCA_GenesinMAGs

description: The table show the result (presence and absence) of rTCA cycle genes in the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994126
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S20_PresenceandAbsence_3HPB_GenesinMAGs

description: The table show the result for the annotation of 3-HPB Cycle genes for the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994126.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S20_PresenceandAbsence_3HPB_GenesinMAGs

description: The table show the result for the annotation of 3-HPB Cycle genes for the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994132
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S21_PresenceandAbsence_DCHB_GenesinMAGs

description: The table show the result for the DCHB genes annotation for the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994132.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S21_PresenceandAbsence_DCHB_GenesinMAGs

description: The table show the result for the DCHB genes annotation for the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994471
title: Dual Regulation of Natural Hydrological Process and Human Activities on the Dissolved Organic Carbon Interception-Transport Balance in Cascade Reservoirs

description: This study investigated the spatiotemporal variation, transport mechanism and source characteristics of dissolved organic carbon (DOC) in the Longyangxia, Laxiwa, Lijiaxia and Liujiaxia cascade reservoirs of the upper Yellow River. Samples were collected throughout a hydrological year (low water, normal water and high water period). Fluorescent components were identified by using three-dimensional excitation-emission matrix fluorescence spectroscopy coupled with parallel factor analysis (EEM-PARAFAC). These analyses were integrated with long term hydrological data (1956-2020) to assess cascade reservoirs regulation impacts. Results showed that DOC concentration followed the order: normal water period &gt; high water period &gt; low water period, which was influenced collectively by glacial meltwater inputs, reservoir interception, and human activities. Water temperature, nitrogen, and phosphorus were key factors influencing DOC distribution. DOM composition varied distinctively across hydrological periods. In the low water period, it was characterized by predominant autochthonous accumulation. The normal water period exhibited a transitional signature, mixing terrestrial inputs with autochthonous production. During the high water period, human influence led to structurally complex DOM dominated by significant allochthonous inputs. Consequently, the cascade system constituted a weak net carbon source, with a net delivery efficiency of 2.3%. This interception-transport balance is dually controlled by natural hydrology and human activities, and projections suggest a potential decline in the system’s carbon sink function as it ages.
DOI: 10.6084/m9.figshare.30994471.v1
title: Dual Regulation of Natural Hydrological Process and Human Activities on the Dissolved Organic Carbon Interception-Transport Balance in Cascade Reservoirs

description: This study investigated the spatiotemporal variation, transport mechanism and source characteristics of dissolved organic carbon (DOC) in the Longyangxia, Laxiwa, Lijiaxia and Liujiaxia cascade reservoirs of the upper Yellow River. Samples were collected throughout a hydrological year (low water, normal water and high water period). Fluorescent components were identified by using three-dimensional excitation-emission matrix fluorescence spectroscopy coupled with parallel factor analysis (EEM-PARAFAC). These analyses were integrated with long term hydrological data (1956-2020) to assess cascade reservoirs regulation impacts. Results showed that DOC concentration followed the order: normal water period &gt; high water period &gt; low water period, which was influenced collectively by glacial meltwater inputs, reservoir interception, and human activities. Water temperature, nitrogen, and phosphorus were key factors influencing DOC distribution. DOM composition varied distinctively across hydrological periods. In the low water period, it was characterized by predominant autochthonous accumulation. The normal water period exhibited a transitional signature, mixing terrestrial inputs with autochthonous production. During the high water period, human influence led to structurally complex DOM dominated by significant allochthonous inputs. Consequently, the cascade system constituted a weak net carbon source, with a net delivery efficiency of 2.3%. This interception-transport balance is dually controlled by natural hydrology and human activities, and projections suggest a potential decline in the system’s carbon sink function as it ages.
DOI: 10.6084/m9.figshare.30994138
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S22_PresenceandAbsence_HPHB_GenesinMAGs

description: The table show the result for the presence and absence of the genes for the HPHB cyclein the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994138.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S22_PresenceandAbsence_HPHB_GenesinMAGs

description: The table show the result for the presence and absence of the genes for the HPHB cyclein the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994195
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S23_PresenceandAbsence_aWLJ_GenesinMAGs

description: The table show the result for the presence and absence of the genes for the aWLJ cyclein the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994195.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S23_PresenceandAbsence_aWLJ_GenesinMAGs

description: The table show the result for the presence and absence of the genes for the aWLJ cyclein the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994198
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S24_PresenceandAbsence_bWLJ_GenesinMAGs

description: The table show the result for the presence and absence of the genes for the bWLJ cyclein the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994198.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S24_PresenceandAbsence_bWLJ_GenesinMAGs

description: The table show the result for the presence and absence of the genes for the bWLJ cyclein the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994201
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S25_CBBMAGs_Correlation_Phylum_Depth

description: The table show the result for the spearman correlation analysis of the phyla of the CBB capable MAGs recovered in this study and the depth of the samples.
DOI: 10.6084/m9.figshare.30994201.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S25_CBBMAGs_Correlation_Phylum_Depth

description: The table show the result for the spearman correlation analysis of the phyla of the CBB capable MAGs recovered in this study and the depth of the samples.
DOI: 10.6084/m9.figshare.30994246
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S26_CBBMAGs_Correlation_Phylum_Salinity

description: The table show the result for the spearman correlation analysis of the phyla of the CBB capable MAGs recovered in this study and the salinity of the samples.
DOI: 10.6084/m9.figshare.30994246.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S26_CBBMAGs_Correlation_Phylum_Salinity

description: The table show the result for the spearman correlation analysis of the phyla of the CBB capable MAGs recovered in this study and the salinity of the samples.
DOI: 10.6084/m9.figshare.30994252
title: UntitleEco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S27_CBBMAGs_Correlation_Phylum_Temperature

description: The table show the result for the spearman correlation analysis of the phyla of the CBB capable MAGs recovered in this study and the tempeature of the samples.
DOI: 10.6084/m9.figshare.30994252.v1
title: UntitleEco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S27_CBBMAGs_Correlation_Phylum_Temperature

description: The table show the result for the spearman correlation analysis of the phyla of the CBB capable MAGs recovered in this study and the tempeature of the samples.
DOI: 10.6084/m9.figshare.30994312
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S28_Prevalence_CBBMAGs_Phylum

description: The table show the prevalence of the phylum of the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994312.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S28_Prevalence_CBBMAGs_Phylum

description: The table show the prevalence of the phylum of the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994321
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S29_Prevalence_CBBMAGs_Class

description: The table show the prevalence of the class of the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994321.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S29_Prevalence_CBBMAGs_Class

description: The table show the prevalence of the class of the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994324
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S30_Prevalence_CBBMAGs_Sea

description: The table show the prevalence of the sea of the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994324.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S30_Prevalence_CBBMAGs_Sea

description: The table show the prevalence of the sea of the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994330
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S31_Pairwise_Comparison_CBBMAGs_Prevalence_Phylum

description: The table show the resultfor the pairwise comparsion of CBB capable MAGs prevalence accross the Phyla of the MAGs included in the study.
DOI: 10.6084/m9.figshare.30994330.v1
title: Eco-phylogenomic Diversity of Marine Carbon Fixing Prokaryotes: Table_S31_Pairwise_Comparison_CBBMAGs_Prevalence_Phylum

description: The table show the resultfor the pairwise comparsion of CBB capable MAGs prevalence accross the Phyla of the MAGs included in the study.