cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.rmuzoq
title: Occurrence Download

description: A dataset containing 5579 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Procyon Storr, 1780",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 5579 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095368-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-52513
title: Intersection of Industrial Boulevard & L.A. 'Junction' Railroad, Southern California, 1932

description: 5 photographs of the intersection of Industrial Boulevard & L.A. 'Junction' Railroad, Southern California, 1932. "Subject: Intersection Industrial b[ou]l[e]v[ar]d & L[os] A[ngeles] 'Junction' R[ail]R[oad]; Client: Union Indemnity, Mr. Holcomb; Original Print Order: 2 ea[ch]; Size: 11x14; Finish: gl[ossy]; Job: 10-6-33; Year: 1932" -- on envelope front. "Operator's Report (Name): Frank; 5 Original Photographs-Size: 11x14, 2 trips to get photo, incl[uding] time in count; Amount: $18.00; Extra Charges: Holcomb" -- on envelope back.
DOI: 10.25549/whit-c170-107723
title: Harbor, Los Angeles, Calif., 1937

description: 8 photographs of men loading and unloading goods from a ship at the Port of Los Angeles, Los Angeles, California, 1937 November. The individual boxes being handled are marked: "Old Quaker," and "The Wilken Family Blended Whiskey, blended and bottled by The Wilken Family, Inc[orporated], plants at Lawrenceburg, Ind[iana] and Aladdin, P[ennsylvani]a." The ship docking is the Mathew Luckenbach.
DOI: 10.15468/dl.dti8lh
title: Occurrence Download

description: A dataset containing 517624 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crataegus L.",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "Geometry POLYGON((-29.53125 52.908902,-23.203125 32.546813,-2.109375 34.885930,28.828124 29.535229,56.953125 13.239945,85.078125 -7.013667,110.390625 -2.108898,155.390625 2.811371,158.203125 44.087585,156.796875 62.593340,75.9375 63.233627,2.109375 64.472793,-27.421875 59.888936,-29.53125 52.908902))",
 "Geometry POLYGON((-14.765625 71.965387,-14.765625 60.586967,92.8125 60.586967,92.8125 71.965387,-14.765625 71.965387))",
 "Geometry POLYGON((-132.890625 53.748710,-132.890625 7.710991,-42.890625 7.710991,-42.890625 53.748710,-132.890625 53.748710))"
 ]
 },
 "HasCoordinate is true"
 ]
}

 The dataset includes 517624 records from 759 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095369-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4wk77m
title: Occurrence Download

description: A dataset listing the 243 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-60.05307 -14.60265,-56.30045 -14.60265,-56.30045 -11.9244,-60.05307 -11.9244,-60.05307 -14.60265))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Characiformes"
 ]
}

 The dataset's 243 records were derived from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108061-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.edgjuh
title: Occurrence Download

description: A dataset containing 156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Apyrrothrix chalybea"
 ]
}

 The dataset includes 156 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108066-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e3b3ds
title: Occurrence Download

description: A dataset containing 1481 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cinchona pubescens Vahl)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1481 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108068-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13519714
title: Data and Python codes used in "A New Approach to Estimate Total Nitrogen Concentration in a Seasonal Lake Based on Multi-Source Data Methodology"

description: These are the dataset and python codes used in a manuscript titled "A New Approach to Estimate Total Nitrogen Concentration in a Seasonal Lake Based on Multi-Source Data Methodology"
DOI: 10.5281/zenodo.13519715
title: Data and Python codes used in "A New Approach to Estimate Total Nitrogen Concentration in a Seasonal Lake Based on Multi-Source Data Methodology"

description: These are the dataset and python codes used in a manuscript titled "A New Approach to Estimate Total Nitrogen Concentration in a Seasonal Lake Based on Multi-Source Data Methodology"
DOI: 10.15468/dl.7jkyyx
title: Occurrence Download

description: A dataset containing 42996 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Issue is one of (Zero coordinate, Coordinate out of range, Coordinate invalid, Coordinate rounded, Geodetic datum invalid, Geodetic datum assumed WGS84, Coordinate reprojected, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate accuracy invalid, Coordinate precision invalid, Coordinate uncertainty meters invalid, Coordinate precision/uncertainty mismatch, Footprint SRS invalid, Footprint WKT mismatch, Footprint WKT invalid, Country coordinate mismatch, Country mismatch, Country invalid, Country derived from coordinates, Continent coordinate mismatch, Continent country mismatch, Continent invalid, Continent derived from country, Continent derived from coordinates, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Recorded date mismatch, Recorded date invalid, Recorded date unlikely, Taxon match fuzzy, Taxon match higher rank, Taxon match aggregate, The scientific name ID was not used in backbone matching, The taxon concept ID was not used in backbone matching, The taxon ID was not used in backbone matching, The scientific name ID was not found in the checklist, The taxon concept ID was not found in the checklist, The taxon ID was not found in the checklist, The scientific name differs on the record from that found in the checklist, Taxon match none, The backbone match found using the taxon IDs differs from what would be found if using the scientific names , Depth not metric, Depth unlikely, Depth min max swapped, Depth non numeric, Elevation unlikely, Elevation min max swapped, Elevation not metric, Elevation non numeric, Modified date invalid, Modified date unlikely, Identified date unlikely, Identified date invalid, Basis of record invalid, Type status invalid, Multimedia date invalid, Multimedia URI invalid, References URI invalid, Error during interpretation, Individual count invalid, Individual count conflicts with occurrence status, Occurrence status unparsable, Occurrence status inferred from individual count, ccurrence status inferred from basis of record, Georeferenced date unlikely, Georeferenced date invalid, Ambiguous institution, Ambiguous collection, Institution match none, Collection match none, Institution match fuzzy, Collection match fuzzy, Institution collection mismatch, Possibly on loan, Different owner institution)",
 "OccurrenceStatus is Present",
 "TaxonKey is Euterpe Mart."
 ]
}

 The dataset includes 42996 records from 307 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108067-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ea3e5j
title: Occurrence Download

description: A dataset containing 1683 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cinnamomum burmanni (Nees & T.Nees) Blume)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1683 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108069-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.je4yvr
title: Occurrence Download

description: A dataset containing 11181 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pygoscelis antarcticus (J.R.Forster, 1781)"
 ]
}

 The dataset includes 11181 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108070-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cxzt6t
title: Occurrence Download

description: A dataset containing 14311 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cinnamomum camphora (L.) J.Presl)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 14311 records from 242 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108071-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jm3dek
title: Occurrence Download

description: A dataset containing 18192657 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Branta canadensis (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 18192657 records from 1133 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108065-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.9254639.v1
title: Additional file 6: of Hybrid sequencing of the Gynostemma pentaphyllum transcriptome provides new insights into gypenoside biosynthesis

description: Table S2 The distribution of GpWRKYs from G. pentaphyllum. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9254639
title: Additional file 6: of Hybrid sequencing of the Gynostemma pentaphyllum transcriptome provides new insights into gypenoside biosynthesis

description: Table S2 The distribution of GpWRKYs from G. pentaphyllum. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.19738538.v1
title: Additional file 5 of Comparative transcriptome analysis of resistant and susceptible wheat in response to Rhizoctonia cerealis

description: Additional file 5: Table S5.
DOI: 10.6084/m9.figshare.19738541.v1
title: Additional file 6 of Comparative transcriptome analysis of resistant and susceptible wheat in response to Rhizoctonia cerealis

description: Additional file 6: Table S6.
DOI: 10.17608/k6.auckland.12924735.v2
title: Hadden Little penguin micro CT head

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.<br>
DOI: 10.6084/m9.figshare.20787058
title: Additional file 2 of Metagenomes of rectal swabs in larger, advanced stage cervical cancers have enhanced mucus degrading functionalities and distinct taxonomic structure

description: Supplementary file 2: Table S1. Software tools/packages used in the shotgun metagenome sequencing data analysis workflow. Table S2. Clinicopathological characteristics of the study cohort. Table S3. Functional richness of metagenomes identified in each patient of the study cohort. Table S4. Differentially abundant taxa identified between LT- and ST-groups by linear discriminant analysis (LDA) effect size (LEfSe) analysis.
DOI: 10.6084/m9.figshare.20787145.v1
title: Additional file 12 of Antioxidant activation, cell wall reinforcement, and reactive oxygen species regulation promote resistance to waterlogging stress in hot pepper (Capsicum annuum L.)

description: Additional file 12: Table S9. The KEGG enrichment of clusters 2 and 5 genes in Fig. 6B.
DOI: 10.6084/m9.figshare.20787175
title: Additional file 6 of Antioxidant activation, cell wall reinforcement, and reactive oxygen species regulation promote resistance to waterlogging stress in hot pepper (Capsicum annuum L.)

description: Additional file 6: Table S3. The ribosome mapping statistics.
DOI: 10.6084/m9.figshare.19740482
title: Identification of key genes and miRNA-mRNA regulatory networks associated with bone marrow immune microenvironment regulations in multiple myeloma by integrative bioinformatics analysis

description: The deregulation of microRNAs (miRNAs) and genes in the bone marrow microenvironment have been involved with the pathogenesis of multiple myeloma (MM). However, the exploration of miRNA-mRNA regulatory networks in MM remains lacking. We used GSE125363, GSE125361, GSE47552, GSE2658, GSE136324, GSE16558, and GSE13591 datasets for this bioinformatics study. We identified 156 downregulated and 13 upregulated differentially expressed miRNAs (DEmiRs) in MM. The DEmiRs are associated with the enrichment of pathways mainly involved with cancers, cellular signaling, and immune regulations. We identified 112 hub genes associated with five significant clusters in MM. Moreover, we identified 9 upregulated hub genes (such as <i>IGF1, RPS28, UBA52, CDKN1A,</i> and <i>CDKN2A</i>) and 52 downregulated hub genes (such as <i>TP53, PCNA, BRCA1, CCNB1,</i> and <i>MSH2</i>) in MM that is targeted by DEmiRs. The expression of DEmiRs targeted two hub genes (<i>CDKN2A</i> and <i>TP53</i>) are correlated with the survival prognosis of MM patients. Furthermore, the expression level of <i>CDKN2A</i> is correlated with immune signatures, including CD4+ Regulatory T cells, T cell exhaustion, MHC Class I, immune checkpoint genes, macrophages, neutrophils, and TH2 cells in the TME of MM. Finally, we revealed the consistently deregulated expression level of key gene <i>CDKN2A</i> and its co-regulatory DEmiRs, including hsa-mir-192, hsa-mir-10b, hsa-mir-492, and hsa-mir-24 in the independent cohorts of MM. Identifying key genes and miRNA-mRNA regulatory networks may provide new molecular insights into the tumor immune microenvironment in MM.
DOI: 10.17608/k6.auckland.12924744.v4
title: Hadden King penguin micro CT head

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.<br>

 <br>
DOI: 10.17608/k6.auckland.12924744.v5
title: Hadden King penguin micro CT head

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.<br>

 <br>
DOI: 10.17608/k6.auckland.12924744.v3
title: Hadden King penguin micro CT head

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.<br>

 <br>
DOI: 10.6084/m9.figshare.19738532
title: Additional file 3 of Comparative transcriptome analysis of resistant and susceptible wheat in response to Rhizoctonia cerealis

description: Additional file 3: Table S3.
DOI: 10.6084/m9.figshare.19738535.v1
title: Additional file 4 of Comparative transcriptome analysis of resistant and susceptible wheat in response to Rhizoctonia cerealis

description: Additional file 4: Table S4.
DOI: 10.6084/m9.figshare.20787181
title: Additional file 8 of Antioxidant activation, cell wall reinforcement, and reactive oxygen species regulation promote resistance to waterlogging stress in hot pepper (Capsicum annuum L.)

description: Additional file 8: Table S5. The mapping region statistics.
DOI: 10.17608/k6.auckland.12924782.v2
title: Hadden Gentoo penguin micro CT head

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.<br>
DOI: 10.17608/k6.auckland.12924782.v3
title: Hadden Gentoo penguin micro CT head

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.<br>
DOI: 10.6084/m9.figshare.19738532.v1
title: Additional file 3 of Comparative transcriptome analysis of resistant and susceptible wheat in response to Rhizoctonia cerealis

description: Additional file 3: Table S3.
DOI: 10.6084/m9.figshare.11352566
title: MOESM10 of Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice

description: Additional file 10: Table S5. Changed expression of genes in ospub73, ptc1, tdr, gamyb-2 and udt1.
DOI: 10.6084/m9.figshare.19738538
title: Additional file 5 of Comparative transcriptome analysis of resistant and susceptible wheat in response to Rhizoctonia cerealis

description: Additional file 5: Table S5.
DOI: 10.6084/m9.figshare.19740482.v1
title: Identification of key genes and miRNA-mRNA regulatory networks associated with bone marrow immune microenvironment regulations in multiple myeloma by integrative bioinformatics analysis

description: The deregulation of microRNAs (miRNAs) and genes in the bone marrow microenvironment have been involved with the pathogenesis of multiple myeloma (MM). However, the exploration of miRNA-mRNA regulatory networks in MM remains lacking. We used GSE125363, GSE125361, GSE47552, GSE2658, GSE136324, GSE16558, and GSE13591 datasets for this bioinformatics study. We identified 156 downregulated and 13 upregulated differentially expressed miRNAs (DEmiRs) in MM. The DEmiRs are associated with the enrichment of pathways mainly involved with cancers, cellular signaling, and immune regulations. We identified 112 hub genes associated with five significant clusters in MM. Moreover, we identified 9 upregulated hub genes (such as <i>IGF1, RPS28, UBA52, CDKN1A,</i> and <i>CDKN2A</i>) and 52 downregulated hub genes (such as <i>TP53, PCNA, BRCA1, CCNB1,</i> and <i>MSH2</i>) in MM that is targeted by DEmiRs. The expression of DEmiRs targeted two hub genes (<i>CDKN2A</i> and <i>TP53</i>) are correlated with the survival prognosis of MM patients. Furthermore, the expression level of <i>CDKN2A</i> is correlated with immune signatures, including CD4+ Regulatory T cells, T cell exhaustion, MHC Class I, immune checkpoint genes, macrophages, neutrophils, and TH2 cells in the TME of MM. Finally, we revealed the consistently deregulated expression level of key gene <i>CDKN2A</i> and its co-regulatory DEmiRs, including hsa-mir-192, hsa-mir-10b, hsa-mir-492, and hsa-mir-24 in the independent cohorts of MM. Identifying key genes and miRNA-mRNA regulatory networks may provide new molecular insights into the tumor immune microenvironment in MM.
DOI: 10.6084/m9.figshare.15022020
title: A hypoxia related long non-coding RNA signature could accurately predict survival outcomes in patients with bladder cancer

description: Hypoxia plays a significant role in tumor progression. This study aimed to develop a hypoxia-related long noncoding RNA (lncRNA) signature for predicting survival outcomes of patients with bladder cancer (BC). The transcriptome and clinicopathologic data were downloaded from The Cancer Genome Atlas (TCGA) database. Univariate Cox regression analysis and Lasso regression analysis were used to screened lncRNAs. Ten lncRNAs were screened out and included into the hypoxia lncRNA signature. The risk score based on hypoxia lncRNA signature could accurately predict the survival outcomes of BC patients. Immune infiltration analysis showed that six types of immune cells had significant different infiltration. Tumor mutation burden (TMB) analysis showed that the risk scores between the wild types and the mutation types of TP53, FGFR3, and RB1 were significantly different. Gene Set Enrichment Analysis (GSEA) showed that cancer-associated pathways belonged to the high risk groups and immune-related signal pathways were enriched into the low risk group. Then, we constructed a predictive model with the risk score, age, and clinical stage, which showed a robust prognostic performance. An lncRNA-mRNA coexpression network was constructed, which contained 62 lncRNA-mRNA links among 10 lncRNAs and 40 related mRNAs. In summary, the hypoxia lncRNA signature could accurately predict prognosis, chemotherapy and immunotherapy response in patients with BC and was relevant to clinicopathologic parameters and immune cell infiltration.
DOI: 10.6084/m9.figshare.11352584
title: MOESM2 of Comparative transcriptome and histological analyses of wheat in response to phytotoxic aphid Schizaphis graminum and non-phytotoxic aphid Sitobion avenae feeding

description: Additional file 2: Data S1. List of all DEGs after infestation by aphids in comparison with controls.
DOI: 10.6084/m9.figshare.11352632.v1
title: MOESM8 of Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice

description: Additional file 8: Table S3. Differentially expressed genes between WT and mutant.