cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/icpsr06185
title: ABC News Bosnia Poll, May 1993
title: Archival Version

description: In this special topic poll, respondents were queried regarding the fighting between Bosnian Serbs and Bosnian Muslims in the former Yugoslavian republic of Bosnia. Issues addressed include President Bill Clinton's handling of the situation in Bosnia, the refusal by the Bosnian Serbs to accept a United Nations peace plan, the United Nations arms embargo in the Bosnian region, potential United Nations authorization of the use of military force against the Bosnian Serbs, and a potential United Nations deadline for the Bosnian Serbs to stop fighting or face allied military action. Those surveyed were asked if they would support air strikes by the United States and its allies in Europe against Bosnian Serb artillery positions and supply lines, whether the United States' and European allies' ground forces should be used in Bosnia, whether the United States should take military action in Bosnia if the European allies did not agree to participate, and whether the United States would eventually be involved in a war in Bosnia. Additional questions concerned the news media's coverage of the situation in Bosnia. Background information on respondents includes political party and sex.
description: Households were selected by random digit dialing. Within households, the respondent selected was the adult living in the household who last had a birthday and who was at home at the time of the interview.
description: Datasets: DS1: ABC News Bosnia Poll, May 1993
description: Persons aged 18 and over living in households with telephones in the 48 contiguous United States.
description: A weight variable with two implied decimal places has been included and must be used in any analysis.
DOI: 10.5281/zenodo.6861250
title: The effects of ants on pest control: a meta-analysis

description: Dataset and R codes of "The effects of ants on pest control: a meta-analysis" by Anjos et al. (2023). We searched for papers in Web of Science<sup>©</sup> and Scopus<sup>©</sup> databases using all available years up to 31st March 2021. We used the PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) protocol for paper search (Moher et al., 2000). We used the following key terms in our search: “ant” AND “biological” AND “control”. To complement our dataset, we searched for more studies in recent reviews (Anjos et al., 2021; Diamé et al., 2018; Drummond and Choate, 2011; Offenberg, 2015; Rosumek et al., 2009; Thurman et al., 2019; Trager et al., 2010; van Mele et al., 2008). We selected studies according to two criteria. Studies must have: (i) investigated ant effects on abundance of pests or natural enemies, or effects of ants on plant damage (i.e., damaged leaves or fruit, lost fruit or lost leaf area) or crop yield (i.e., fruit production and fruit biomass); (ii) experimentally evaluated the influence of ants by contrasting ant presence with ant exclusion (e.g., ants have been excluded using physical or chemical barriers) on agrosystems. Our initial search identified 2,682 studies (1207 in Web of Science<sup>©</sup> and 1475 in Scopus<sup>©</sup>) that were potentially appropriate for our review. Of these, 678 were eliminated because they were duplicates and 1953 because they were not about the subject of interest or they were not about studies that compared the ant presence and exclusion protocols (Supporting Information, Fig. S1). Then, after applying our initial inclusion criteria (i, ii), 52 studies from our search remained in our dataset (Supporting Information, Table S1). Overall, these studies provided 857 cases (gathered through effect size estimates) for our analyses
DOI: 10.5517/ccdc.csd.cc2280s5
title: CCDC 1914336: Experimental Crystal Structure Determination

description: Related Article: Anastasia Cheplakova, Denis Samsonenko|2019|CSD Communication|||
DOI: 10.6073/pasta/341cc088f591a5dc7dfb27e517ecfc5d
title: Plant aboveground biomass data: Biodiversity II: Effects of Plant Biodiversity on Population and Ecosystem Processes

description: Biodiversity II (E120) is designed to determine how the number of plant species affects the dynamics of ecological processes at the population, community, and ecosystem levels. By experimentally manipulating the number of species and the kinds of species, the amount of plant growth and the change from year to year, that result can be examined. Plots are large (9m x 9m actively maintained) and well-replicated, allowing responses of plant pathogens, insect herbivores, seed predators, soil parameters, invasive plant species and other variables to also be studied. Plots were seeded in May 1994 to have 1, 2, 4, 8, or 16 species, with roughly 30 replicates of each diversity level. The species composition of each plot was chosen by random draw from a pool of 18 grassland perennials that included four warm-season (C4) grasses, four cool-season (C3) grasses, four legumes, four non-legume forbs, and two woody species. All species occur in monoculture allowing comparison of responses of each species in monoculture to combinations of these same species. The experiment was established in 1994 by the lead investigators David Tilman, Peter Reich, Johannes Knops, and David Wedin. Experiment 120 is similar to Experiment 123, but it uses larger plots to provide a large capacity for long-term subexperiments.
DOI: 10.5281/zenodo.1443566
title: Single-cell -omics datasets containing a trajectory

description: Contains datasets to compare trajectory inference methods. See https://benchmark.dynverse.org

These files can be opened in R using `readRDS` .

Each file is a list containing at least:


	expression and counts: filtered log<sub>2</sub> normalised expression files and raw counts
	milestone_network, milestone_percentages and divergence_regions: the trajectory model
DOI: 10.5281/zenodo.6954827
title: Data associated with PNAS Delworth et al 2022

description: Data accompanying journal publication.
DOI: 10.5281/zenodo.3886816
title: Experimental Data Set for the study "Exploratory Landscape Analysis is Strongly Sensitive to the Sampling Strategy"

description: This are the feature values used in the study "Exploratory Landscape Analysis is Strongly Sensitive to the Sampling Strategy". The dataset regroups feature values for every "cheap" features available in the R package <em>flacco </em>and are computed using 5 sampling strategies and in dimension \($d=5$\): Random: the classical Mersenne-Twister algorithm; Randu: a random number generator that is notoriously bad; LHS: a centered Latin Hypercube Design; iLHS: an improved Latin Hypercube Design; Sobol: points extracted from a Sobol' low-discrepancy sequence. The csv file <em>features_summury_dim_5_ppsn.csv </em>regroups 100 values for every features whereas <em>features_summury_dim_5_ppsn_median.csv </em>regroups for every feature the median of the 100 values. In the folder <em>PPSN_feature_plots</em> are the histograms of feature values on the 24 COCO functions for 3 sampling strategies: Random, LHS and Sobol. The Python file <em>sampling_ppsn.py</em> is the code used to generate the sample points from which the feature values are computed. The file <em>stats50_knn_dt.csv</em> provide the raw data of median and IQR (inter quartile interval) for the heatmaps and boxplots available in the paper. Finally, the files <em>results_classif_knn100.csv</em> (resp. dt) provide the accuracy of 100 classifications for every settings.
DOI: 10.5281/zenodo.5606932
title: 75 Coral Endolith Bacterial Genomes (MAGs) from Red Sea corals Goniastrea edwardsi and Porites lutea

description: The skeleton of reef-building corals harbors diverse microbial communities that can supply energy to the coral host tissues and might have an integral role in holobiont nutrient cycling. However, we are lacking functional insight of the endolithic microbiome at large. In particular, the link between endolithic microbiome diversity and encoded genomic potential to supply energy to the coral host during coral bleaching, in the absence of their Symbiodiniaceae photosymbionts, remains poorly understood. Here we assembled endolith bacterial MAGs from DNA of coral skeletons from Goniastrea edwardsi and Porites lutea, two common reef‐building corals from the central Red Sea.
description: Genomes are analyzed/presented in the following publication: Scott, Carly Brielle and Cárdenas, Anny and Mah, Matthew and Narasimhan, Vagheesh and Rohland, Nadin and Toth, Lauren and Voostra, Christian and Reich, David and Matz, Mikhail, Millennia-Old Coral Holobiont DNA Provides Insight into Future Adaptive Trajectories. Available at SSRN: https://ssrn.com/abstract=3917178 or http://dx.doi.org/10.2139/ssrn.3917178
DOI: 10.5281/zenodo.5625487
title: COVID-19 vaccination data in Israel by age over time until August 2021

description: COVID-19 vaccination data in Israel processed to show vaccination by age over time. These datasets are derived from publicly available Ministry of Health data, but processed for analytics about uptake in different age groups over time. They cover the mass vaccination campaign for COVID-19 until August 2021. The campaign consisted of the administration of multiple doses of the Pfizer vaccine.
description: Original Ministry of Health data often records strings instead of numbers, and sometimes records estimated numbers i.e. "&lt;15". All data recorded as "&lt;15" was changed to the numeric value of zero.
DOI: 10.6073/pasta/c2bc09303d540666cdcd2cd3a98121fe
title: Soil nitrogen: Biodiversity II: Effects of Plant Biodiversity on Population and Ecosystem Processes

description: Biodiversity II (E120) is designed to determine how the number of plant species affects the dynamics of ecological processes at the population, community, and ecosystem levels. By experimentally manipulating the number of species and the kinds of species, the amount of plant growth and the change from year to year, that result can be examined. Plots are large (9m x 9m actively maintained) and well-replicated, allowing responses of plant pathogens, insect herbivores, seed predators, soil parameters, invasive plant species and other variables to also be studied. Plots were seeded in May 1994 to have 1, 2, 4, 8, or 16 species, with roughly 30 replicates of each diversity level. The species composition of each plot was chosen by random draw from a pool of 18 grassland perennials that included four warm-season (C4) grasses, four cool-season (C3) grasses, four legumes, four non-legume forbs, and two woody species. All species occur in monoculture allowing comparison of responses of each species in monoculture to combinations of these same species. The experiment was established in 1994 by the lead investigators David Tilman, Peter Reich, Johannes Knops, and David Wedin. Experiment 120 is similar to Experiment 123, but it uses larger plots to provide a large capacity for long-term subexperiments.
DOI: 10.3886/icpsr36116.v1
title: Uniform Crime Reporting Program Data: Arrests by Age, Sex, and Race, Summarized Yearly, 2013
title: Version 1

description: These data provide information on the number of arrests reported to the Federal Bureau of Investigation's Uniform Crime Reporting (UCR) Program each year by police agencies in the United States. These arrest reports provide data on 43 offenses including violent crime, drug use, gambling, and larceny. The data received by ICPSR were structured as a hierarchical file containing, per reporting police agency: an agency header record, and 1 to 43 detail offense records containing the counts of arrests by age, sex, and race for a particular offense. ICPSR restructured the original data to logical record length format with the agency header record variables copied onto the detail records. Consequently, each record contains arrest counts for a particular agency-offense.
description: ICPSR data undergo a confidentiality review and are altered when necessary to limit the risk of disclosure. ICPSR also routinely creates ready-to-go data files along with setups in the major statistical software formats as well as standard codebooks to accompany the data. In addition to these procedures, ICPSR performed the following processing steps for this data collection: Created variable labels and/or value labels.; Performed recodes and/or calculated derived variables.; Checked for undocumented or out-of-range codes..
description: Datasets: 
 
 DS1: Dataset
description: Uniform Crime Reporting Program Data Series
description: computer-assisted self interview (CASI), on-site questionnaire
description: Arrests reported by law enforcement agencies to the Federal Bureau of Investigation's Uniform Crime Reporting program. Smallest Geographic Unit: states, counties, cities
DOI: 10.5066/f7vx0dn5
title: Particulate Matter Identification in Lung Tissue from Deployers, Positive, and Negative controls Using Scanning Electron Microscopy and Energy Dispersive Spectroscopy (2013-2016)

description: We developed and tested a new method for in situ characterization of the types and distribution of inorganic particles in biopsied lung tissue from three diverse human subject groups using field emission scanning electron microscopy with an energy dispersive analyzer. Backscattered electron and secondary electron images of particulate matter in lung tissue were acquired. Inorganic particulate matter in the field of view of the image was analyzed using energy dispersive spectroscopy.
DOI: 10.5281/zenodo.6677636
title: Source Data files for: Primary cilia and SHH signaling impairments in human and mouse models of Parkinson's disease

description: Parkinson’s disease (PD) as a progressive neurodegenerative disorder arises from multiple genetic and environmental factors. However, underlying pathological mechanisms remain poorly understood. Using multiplexed single-cell transcriptomics, we analyze human neural precursor cells (hNPCs) from sporadic PD (sPD) patients. Alterations in gene expression appear in pathways related to primary cilia (PC). Accordingly, in these hiPSC-derived hNPCs and neurons, we observe a shortening of PC. Additionally, we detect a shortening of PC in <em>PINK1</em>-deficient human cellular and mouse models of familial PD. Furthermore, in sPD models, the shortening of PC is accompanied by an increased SHH signal transduction. Inhibition of this pathway rescues the alterations in PC morphology and mitochondrial dysfunction. Thus, increased SHH activity due to ciliary dysfunction is needed for the development of pathoetiological phenotypes observed in sPD, like mitochondrial dysfunction. In sum, altered PC function is part of early PD pathoetiology and inhibiting the overactive SHH signaling is a potential neuroprotective therapy.
DOI: 10.5281/zenodo.800548
title: Datasets And Scripts: Full-Length Mrna Sequencing Uncovers A Widespread Coupling Between Transcription And Mrna Processing

description: The multilayered control of gene expression requires tight coordination of regulatory mechanisms at the transcriptional and post-transcriptional level. In this study, we studied the interdependence of transcription, splicing and polyadenylation events on single mRNA molecules by full-length mRNA sequencing. In MCF-7 breast cancer cells and three human tissues, we found an unforeseen number of genes that demonstrate mutually inclusive or exclusive alternative transcription and mRNA processing events, which can span the entire length of mRNA molecules. Furthermore, alternative poly(A) sites that are coupled with alternative splicing events are depleted for known poly(A) signals and enriched for MBNL binding motifs, supporting a dual role of MBNL proteins in regulating splicing and polyadenylation. We predict thousands of open-reading frames from the sequence of full-length mRNAs, allowing for a more sensitive proteogenomics analysis of MCF-7 mass-spectrometry data. Our findings demonstrate that our understanding of transcriptome complexity is far from complete and provides a framework to reveal largely unresolved mechanisms that coordinate transcription and mRNA processing.
description: This repository hosts all datasets that were used during the course of the study.
DOI: 10.6084/m9.figshare.19878115.v1
title: Prevalence of Diabetes Mellitus among newly detected sputum positive Pulmonary Tuberculosis patients and associated risk factors.

description: Data in Excel Sheet.
DOI: 10.6084/m9.figshare.20055539.v1
title: Supplementary files: Global prevalence and potential influencing factors of COVID-19 vaccination hesitancy: a meta-analysis

description: Supplementary files: Global prevalence and potential influencing factors of COVID-19 vaccination hesitancy: a meta-analysis
DOI: 10.5281/zenodo.6321667
title: Data of glaciological property constraints for fractures in FRIS

description: This dataset is applied to set the glaciological property-based constraints for fractures extracted in FRIS. The dataset includes:<br> (1) Outer boundaries of ice rises and ice rumples in FRIS and the corresponding buffer zones, which is modified from Inventory of Antarctic ice rises and rumples (Matsuoka et al., 2015).<br> (2) Ice velocity maps of FRIS, including x and y component of ice velocity, which is generated based on MEaSUREs InSAR-Based Antarctica Ice Velocity Map (Version 2) (Mouginot et al., 2017).<br>
description: {"references": ["Matsuoka, K., Hindmarsh, R. C. A., Moholdt, G., Bentley, M. J., Pritchard, H. D., Brown, J., et al. (2015). Antarctic ice rises and rumples: Their properties and significance for ice-sheet dynamics and evolution. Earth-Science Reviews, 150, 724-745. doi:10.1016/j.earscirev.2015.09.004", "Mouginot, J., Scheuchl, B., & Rignot, E. (2017). MEaSUREs Annual Antarctic Ice Velocity Maps 2005\u20132017, Version 1, NASA National Snow and Ice Data Center Distributed Active Archive Center, Boulder, Colorado, USA. In."]}
DOI: 10.3886/icpsr09366
title: World Factbook, 1989
title: Archival Version

description: This annual survey contains the most current information on topics of interest to United States government officials. Data are presented in alphabetical order for 247 entities that include all countries, dependent areas, and other geographic entities. The entire surface of the world is represented without overlap or omission, and an additional entry for the world as a whole also is presented. Information provided covers the six major topic areas of geography, people, government, economy, communications, and defense forces.
description: Datasets: DS1: World Factbook, 1989
description: The world.
DOI: 10.6084/m9.figshare.19615407.v2
title: Data for a synthesis of EICA studies

description: These compiled data support two meta-analyses examining the evolution of competitive ability hypothesis. These are all data collected from all relevant studies. However, not all reported observations met the criteria for the meta analyses
DOI: 10.6073/pasta/940934edb437799bba2ca0a996cf072c
title: Plot coordinates for the E120 Big Biodiversity Field: Biodiversity II: Effects of Plant Biodiversity on Population and Ecosystem Processes

description: Biodiversity II (E120) is designed to determine how the number of plant species affects the dynamics of ecological processes at the population, community, and ecosystem levels. By experimentally manipulating the number of species and the kinds of species, the amount of plant growth and the change from year to year, that result can be examined. Plots are large (9m x 9m actively maintained) and well-replicated, allowing responses of plant pathogens, insect herbivores, seed predators, soil parameters, invasive plant species and other variables to also be studied. Plots were seeded in May 1994 to have 1, 2, 4, 8, or 16 species, with roughly 30 replicates of each diversity level. The species composition of each plot was chosen by random draw from a pool of 18 grassland perennials that included four warm-season (C4) grasses, four cool-season (C3) grasses, four legumes, four non-legume forbs, and two woody species. All species occur in monoculture allowing comparison of responses of each species in monoculture to combinations of these same species. The experiment was established in 1994 by the lead investigators David Tilman, Peter Reich, Johannes Knops, and David Wedin. Experiment 120 is similar to Experiment 123, but it uses larger plots to provide a large capacity for long-term subexperiments.
DOI: 10.3886/icpsr03901.v2
title: Census Quality Survey Public Use Data File, 2001: [United States]
title: Version 2

description: This study was designed with the primary objective of producing a data file that could be used to bridge between the "single" race distribution in the 1990 Census and other household surveys and the "one or more races" distribution in Census 2000. The Census Quality Survey (CQS) was a nationally representative sample of about 55,000 households. Responding to a mailback questionnaire, one-half of the sample household respondents were asked to "mark one race," and during a telephone recontact, these respondents were asked to "select one or more races." For the other half of the sample households, the reverse procedure was used. Data from these two contacts may be used to produce "bridging parameters" to compare race distributions collected under methodologies that request either one race or one or more races. In addition, Census 2000 records were matched to their respective CQS records (with a match success rate of 86 percent). The matched records may also be used to produce bridging estimates.
description: ICPSR data undergo a confidentiality review and are altered when necessary to limit the risk of disclosure. ICPSR also routinely creates ready-to-go data files along with setups in the major statistical software formats as well as standard codebooks to accompany the data. In addition to these procedures, ICPSR performed the following processing steps for this data collection: Created variable labels and/or value labels..
description: Datasets: 
 
 DS0: Study-Level Files 
 DS1: Census Quality Survey Data 
 DS2: Census Quality Survey to Evaluate Responses to the Census 2000 Question on Race: An Introduction to the Data
description: The codebook accompanying Part 1 data and documentation distributed as Part 2 are provided by the principal investigator as Portable Document Format (PDF) files. The PDF file format was developed by Adobe Systems Incorporated and can be accessed using PDF reader software, such as the Adobe Acrobat Reader. Information on how to obtain a copy of the Acrobat Reader is provided on the ICPSR Web site.
description: All persons and housing units in the United States in 2000.
description: A nationally representative sample of about 55,000 households was drawn.