cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4231/0qdk-qc11
title: Data for: Temperature affects the toxicity of pesticides to cercariae of the trematode Echinostoma trivolvis

description: &lt;p&gt;Global climate change is predicted to have significant impacts on ecological interactions such as host-parasite relationships. Increased temperatures may also interact with other anthropogenic stressors, such as chemical contaminants, to exacerbate or reduce parasite transmission. However, studies on the effects of pesticides on non-target species are typically conducted at one standard temperature, despite the toxicity of many agrochemicals being temperature-dependent. Furthermore, most studies assessing the effects of temperature on pesticide toxicity have been conducted on host organisms, limiting our understanding of how temperature affects the toxicity of pesticides to free-living parasite stages as they move through the environment in search of a host. Using the free-swimming cercariae stage of the trematode &lt;em&gt;Echinostoma trivolvis&lt;/em&gt;, we &lt;a name="_Hlk86318995"&gt;examined &lt;/a&gt;how the toxicities of three different pesticides (a carbamate insecticide, strobilurin fungicide, and triazine herbicide) vary by temperature by monitoring cercarial swimming activity over time. Our three main findings were: 1) a strong main effect of temperature across all pesticide trials &ndash; higher temperatures caused cercariae to cease swimming activity earlier, likely due to an increased rate of energy expenditure, 2) atrazine, azoxystrobin, and carbaryl were directly toxic to cercariae to some degree, but not in a predictable dose-dependent manner, and 3) the temperature at which pesticide exposure occurs could affect its toxicity to cercariae. The interaction between pesticide and temperature was most evident in the azoxystrobin exposure; azoxystrobin caused cercariae to cease swimming activity earlier at 30 &deg;C but caused cercariae to maintain swimming activity longer at 18 &deg;C relative to their respective pesticide-free control treatments. These findings highlight the importance of conducting toxicity assays at multiple temperatures and suggest that the combined effects of pesticides and temperature on host-parasite interactions may be difficult to generalize.&lt;/p&gt;
description: These data correspond to a paper entitled "Temperature affects the toxicity of pesticides to cercariae of the trematode Echinostoma trivolvis" by LS Billet, A Belskis, and JT Hoverman published in the journal Aquatic Toxicology.
DOI: 10.15468/dl.5fpr35
title: Occurrence Download

description: A dataset containing 2604 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucalyptus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2604 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059520-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4231/mtdc-3c27
title: Electric and Hybrid Vehicle Miles Travelled Dataset

description: &lt;p&gt;This dataset provides the total electric and hybrid vehicle miles travelled across 11 states and 1014 counties in the United States during the month of August 2021. Approximately 218 billion commercially available connected vehicle records were aggregated by state, county, date, and hour of the day to develop this dataset. In total, there were 51 million vehicle miles traveled by battery electric and hybrid electric vehicles during this period. The dataset (ev_hv_vmt_aug21_purr.csv&lt;name_of_csv_file&gt;) consists of the following attributes:&lt;/name_of_csv_file&gt;&lt;/p&gt;

&lt;ol&gt;
 &lt;li&gt;date: Date (in mm/dd/yyyy format and ranges from 08/1/21 &ndash; 08/31/21)&lt;/li&gt;
 &lt;li&gt;hour: Hour of the day in local time (ranges from 0 to 23)&lt;/li&gt;
 &lt;li&gt;state: 2-letter state codes used by the United States Postal Service (one of CA, CT, GA, IN, MN, NC, OH, PA, UT, TX, WI)&lt;/li&gt;
 &lt;li&gt;county: Name of county&lt;/li&gt;
 &lt;li&gt;evmt: Total miles traveled by battery electric vehicles&lt;/li&gt;
 &lt;li&gt;hvmt: Total miles traveled by hybrid electric vehicles&lt;/li&gt;
&lt;/ol&gt;

&lt;p&gt;&lt;strong&gt;Acknowledgements&lt;/strong&gt;&lt;/p&gt;

&lt;p&gt;Movement data between August 1&lt;sup&gt;st&lt;/sup&gt; and August 31&lt;sup&gt;st&lt;/sup&gt;, 2021, used in this dataset was provided by Wejo Data Services Inc. The vehicle classification code from the movement data was matched with the National Highway Traffic Safety Administration&rsquo;s (NHTSA) Product Information Catalog Vehicle Listing (vPIC) API to classify each record as internal combustion, battery electric or hybrid vehicle.&lt;/p&gt;
description: Total electric and hybrid vehicle miles travelled across 11 states and 1014 counties in the United States during the month of August 2021
DOI: 10.4231/fphp-0153
title: Multi-Species Prediction of Physiological Traits with Hyper-Spectral Modeling

description: &lt;p&gt;Lack of high-throughput phenotyping is a bottleneck to breeding for abiotic stress tolerance in crop plants. Efficient and non-destructive hyperspectral imaging can quantify plant physiological traits under abiotic stresses; however, prediction models generally are developed for few genotypes of one species, limiting the broader applications of this technology. Therefore, the objective of this research was to explore the possibility of developing cross-species models to predict physiological traits (relative water content and nitrogen content) based on hyperspectral reflectance through partial least square regression for three genotypes of sorghum (&lt;i&gt;Sorghum bicolor&lt;/i&gt; (L.) Moench) and six genotypes of corn (&lt;i&gt;Zea mays&lt;/i&gt; L.) under varying water and nitrogen treatments. Multi-species models were predictive for relative water content of sorghum and corn (R&lt;sup&gt;2&lt;/sup&gt; = 0.809), as well as for nitrogen content of sorghum and corn (R&lt;sup&gt;2&lt;/sup&gt; = 0.637). Reflectances at 506, 535, 583, 627, 652, 694, 722 and 964 nm were responsive to the changes in relative water content while the reflectances at 486, 521, 625, 680, 699 and 754 nm were responsive to changes in nitrogen content. High-throughput hyperspectral imaging can be used to predict physiological status of plants across genotypes and some similar species with acceptable accuracy.&lt;/p&gt;
description: High-throughput hyperspectral imaging in corn and sorghum can be used in multi-species models to predict water and nitrogen status of plants within and across these crop species.
DOI: 10.4231/fg9t-7v77
title: ABAQUS Code for the Simulation of Tubes Consisting of Topologically Interlocked Building Blocks

description: &lt;p&gt;A set of three input files for the FE code ABAQUS is provided to simulate the mechanical response of tubes built from topologically interlocked building blocks.&lt;/p&gt;

&lt;p&gt;TIM_FP_ar1p6.inp: ABAQUS inp file for the simulation of the mechanical loading of a topologically interlocked tube, tube aspect ratio 1.6&lt;/p&gt;

&lt;p&gt;TIM_FP_ar1p6.inp: ABAQUS inp file for the simulation of the mechanical loading of a topologically interlocked tube, tube aspect ratio 2.3&lt;/p&gt;

&lt;p&gt;TIM_FP_ar1p6.inp: ABAQUS inp file for the simulation of the mechanical loading of a topologically interlocked tube, tube aspect ratio 3.0&lt;/p&gt;

&lt;p&gt;This work was supported by NSF Award 1662177.&lt;/p&gt;
description: A set of three input files for ABAQUS models to simulate the response of tubes built from topologically interlocked building blocks.
DOI: 10.4231/982h-t007
title: A model intercomparison analysis for controls on C accumulation in North American peatlands

description: &lt;p&gt;Peatland biogeochemical processes have not been adequately represented in existing earth system models, which might have biased the quantification of Arctic carbon-climate feedbacks. We revise the Peatland Terrestrial Ecosystem Model (PTEM) by incorporating additional peatland biogeochemical processes. The revised PTEM is evaluated by comparing with Holocene Peatland Model (HPM) in simulating peat physical and biogeochemical dynamics in three North American peatlands: a permafrost-free fen site (Mariana Fen), a permafrost-free bog site (Bear Bog) and a permafrost bog site (Innoko Bog). Peatland carbon dynamics are simulated from peat initiation to 1990 and then to year 2300 with both models. Model responses to the changes in temperature and precipitation are analyzed to identify key processes affecting peatland carbon accumulation rates. PTEM is written in C++ and run on Linux platform, while HPM is written in Matlab. This dataset provides the PTEM and HPM simulation outputs in text files, and can be used to reproduce the figures in &lt;em&gt;A model intercomparison analysis for controls on C accumulation in North American peatlands. &lt;/em&gt;&lt;/p&gt;
description: This dataset contains the Peatland Terrestrial Ecosystem Model and Holocene Peatland Model simulation results for three peatland sites, all in text files. Three sites include: Mariana fen , Bear bog and Innoko bog.
DOI: 10.4231/eavv-kb79
title: STL Files for Tubes Built of Topologically Interlocking Building Blocks

description: &lt;p&gt;STL files are provided for the additive manufacture of tubes assembled from topologically interlocked building blocks. These files are intended for use with the Polyjet(TM) process only. The support material will fill the gaps between building blocks and aid in realizing the assembly. Support material is to be removed from o=the inner and outer tuber surfaces.&lt;/p&gt;

&lt;p&gt;TIM_tube_AR1p6.stl   File for the manufacture of a tube with aspect ratio 1.6&lt;/p&gt;

&lt;p&gt;TIM_tube_AR2p3.stl   File for the manufacture of a tube with aspect ratio 2.3&lt;/p&gt;

&lt;p&gt;TIM_tube_AR3p0.stl   File for the manufacture of a tube with aspect ratio 3.0&lt;/p&gt;

&lt;p&gt;This work was supported by NSF 1662177.&lt;/p&gt;
description: This data set contains STL files to use for 3D printing of tubes made of topologically interlocked building blocks.
DOI: 10.4231/njte-fa88
title: Likely Extent of Agricultural Drainage in the U.S. Midwest

description: &lt;p&gt;This dataset identifies agricultural areas that are likely to have been drained for crop production, usually through subsurface tile drainage, in the Midwestern United States. These areas were identified based on the natural drainage condition of the soil, using the 2018 gSSURGO data from the USDA Natural Resources Conservation Service. Only agricultural land is included, based on the 2011 National Land Cover Database. Very poorly to poorly drained soils are assumed to have at least some form of artificial drainage installed to support agricultural land use, and therefore classified as &quot;likely to be drained&quot;. Somewhat poorly drained soils are classified as &quot;potentially drained&quot;, as these soils are often included whenever drainage improvements or upgrades are made in the field. Moderately well drained to excessively drained soils are classified as &quot;unlikely to be drained&quot; as these soils are not likely to suffer from excess soil water conditions, and therefore not likely to be artificially drained. Field assessment is needed when determining the actual drained conditions of a particular area of interest. Maps are also available online at &lt;a href="https://transformingdrainage.org/tools/drained-area-tool/"&gt;https://transformingdrainage.org/tools/drained-area-tool/&lt;/a&gt;.&lt;/p&gt;
description: This dataset provides 30 m resolution raster layers of the likely extent of drained agricultural lands in the U.S. Midwest based on soil and land use, and a file geodatabase with tables summarizing the extent by state, county, and HUC8 watershed boundary.
DOI: 10.4231/42zj-a891
title: Bias in CMIP6 historical U.S. severe convective environments driven by bias in mean-state near-surface moist static energy

description: &lt;p&gt;This database provides data (in NetCDF format) for reproducing figures in the manuscript of Chavas&amp;Li (2022), with the abstract of the manuscript described below.&lt;/p&gt;

&lt;p&gt;Abstract: &quot;This work evaluates how well Coupled Model Intercomparison Project 6 (CMIP6) models reproduce the climatology of North American SCS environments in ERA5 reanalysis and examines what drives biases across models. Biases in Springtime SCS environments vary widely in magnitude and spatial pattern, but most models do well in reproducing the climatological pattern and a few also reproduce the overall magnitude. SCS bias is driven by bias in extreme CAPE. This bias is ultimately found to be driven by bias in mean-state near-surface moist static energy (MSE), indicating that the SCS environments depend strongly on the near-surface mean state. Results are broadly similar to Spring across all seasons, particularly Summer. Biases differ strongly across parent models but weakly across child models of the same parent. These outcomes help identify models well-suited for studying climate effects on SCS environments and also provide a foundation for improving model performance in the future.&quot;&lt;/p&gt;
description: This database provides data (in NetCDF format) for reproducing figures in the manuscript of Chavas&Li (2022).
DOI: 10.4231/rvm1-g302
title: Changes in Lipid Profile and SOX-2 Expression in RM-1 Cells after Co-Culture with Preimplantation Embryos or with Deproteinated Blastocyst Extracts

description: &lt;p&gt;In this study we utilize a class-based small molecule-focused approach to evaluate the paracrine interaction of preimplantation embryos (or simply their environment) with mouse prostate carcinoma cells (RM-1) and the effect of their close contact on the cancer cell metabolism. For this assessment we surveyed the lipid profiles of the cancer cells upon (i) co-incubation with two-cell embryos throughout the blastocyst stage or (ii) exposure to deproteinated blastocyst extracts, and compared them with untreated RM-1 cells. Additionally, we correlated these small-molecule profiles with the gene expression levels of SOX-2, a transcription factor commonly related to cell stemness properties. Our initial results demonstrate that both treatments (co-culture with preimplantation embryos or with deproteinated blastocyst extracts) induce changes in SOX-2 expression levels as well as in the quantities/production of specific acyl-carnitines, diacylglycerols, phospholipids, and cardiolipins in the RM-1 cells. This indicates that the &lt;i&gt;in vitro&lt;/i&gt; system used to expose cancer cells to a mimicry of early embryonic environment allowed biochemical interaction between embryos and RM-1 cells. Further, it shows that the small molecules secreted by blastocysts, and their extracts, are bioactive and induce metabolic changes in cancer cells. We expect this &lt;i&gt;in vitro&lt;/i&gt; model, as well as our analytical methodology, to be useful tools in order to obtain new insights into the paracrine stem cell communication pathways that play a role in CSC differentiation.&lt;/p&gt;

&lt;p&gt;File &quot;Samples ID_Morato et al 2022&quot; list samples ID and experimental group identification&lt;/p&gt;

&lt;p&gt;File &quot;Methods_Morato et al 2022&quot; has the description of the data acquisition methods&lt;/p&gt;

&lt;p&gt;Folder &quot;Relative amounts of lipids used for statistical analysis&quot;  contains the relative amounts of the MRMs related to the lipids described in the publication. These data was used for the statistical analysis&lt;/p&gt;

&lt;p&gt;Folder &quot;LC-MSMS Cardiolipins&quot; has raw raw LC-MS/MS data (.d extension used by MassHunter software, Agilent Technologies)&lt;/p&gt;

&lt;p&gt;Folder &quot;MRM Profiling data&quot; has raw MRM profiling  data (.d extension used by MassHunter software, Agilent Technologies)&lt;/p&gt;
description: The embryonic environment can modify cancer cell metabolism, and it is reported to induce the loss of tumorigenic properties and even affect the differentiation of cancer cells into normal tissues. The cellular mechanisms related to this...
DOI: 10.4231/zvn1-4q26
title: SpeedCore Design Examples

description: &lt;p&gt;This package includes Mathcad sheets for the design examples in AISC Design Guide on SpeedCore design. These detailed design examples showcase the use of the design specification and procedure described in the design guide. The examples cover wind and seismic design of coupled and uncoupled SpeedCore walls for typical 8 to 22 story buildings including detailed calculations for the design of the composite walls, coupling beams, and coupling beam-to-wall connections.&lt;/p&gt;
description: Mathcad sheets for the design examples in AISC Design Guide on SpeedCore Design.
DOI: 10.4231/p1c7-cv45
title: Large-scale rollout of extension training in Bangladesh: Challenges and opportunities for gender-inclusive participation

description: &lt;p&gt;Despite the recognized importance of women&rsquo;s participation in agricultural extension services, research continues to show inequalities in women&rsquo;s participation. Emerging capacities for conducting large-scale extension training using information and communication technologies (ICTs) now afford opportunities for generating the rich datasets needed to analyze situational factors that affect women&rsquo;s participation.  Data was recorded from 1,070 video-based agricultural extension training events (131,073 farmers) in four Administrative Divisions of Bangladesh (Rangpur, Dhaka, Khulna, and Rajshahi).  The study statistically analyzed the effect of gender of the trainer, time of the day, day of the week, month of the year, Bangladesh Administrative Division, and venue type on (1) the total number of extension event attendees and (2) the number of females attending. The study revealed strong gender specific training preferences.  Several factors that increased total participation, decreased female attendance (e.g., male-led training event held after 3:30 pm in Rangpur). These findings highlight the dilemma faced by extension trainers seeking to maximize attendance at training events while avoiding exacerbating gender inequalities. The study concludes with a discussion of ways to mitigate gender exclusion in extension training by extending data collection processes, incorporating machine learning to understand gender preferences, and applying optimization theory to increase total participation while concurrently improving gender inclusivity.&lt;/p&gt;

&lt;p&gt;The three types of screened videos included early wheat sowing (EWS), healthy rice seedlings (HRS), and fall armyworm (FAW).&lt;/p&gt;
description: The study concludes with a discussion of ways to mitigate gender exclusion in extension by data collection processes, incorporating machine learning to understand gender preferences, and applying optimization theory to increase total participation
DOI: 10.4231/ggpv-c321
title: Comparative Toxicity of Aquatic Per- and Polyfluoroalkyl Substance Exposure in Three Species of Amphibians

description: &lt;p&gt;Per- and polyfluoroalkyl substances (PFAS) are contaminants of concern due to their widespread occurrence in the environment, persistence, and potential to elicit a range of negative health effects. PFAS are regularly detected in surface waters, but their effects on many aquatic organisms are still poorly understood. Species with thyroid-dependent development, like amphibians, can be especially susceptible to PFAS effects on thyroid hormone regulation. We examined sublethal effects of aquatic exposure to four commonly detected PFAS on larval northern leopard frogs (&lt;em&gt;Rana [Lithobates] pipiens&lt;/em&gt;), American toads (&lt;em&gt;Anaxyrus americanus&lt;/em&gt;), and eastern tiger salamanders (&lt;em&gt;Ambystoma tigrinum&lt;/em&gt;). Animals were exposed for 30 days (frogs and salamanders) or until metamorphosis (toads) to 10, 100, or 1,000 mg/L of perfluorooctane sulfonate (PFOS), perfluorooctanoic acid (PFOA), perfluorohexane sulfonate (PFHxS), or 6:2 fluorotelomer sulfonate (6:2 FTS). We measured effects on survival, body condition and development, We determined that chronic exposure to common PFAS can negatively affect amphibian body condition and development at concentrations as low as 10 ug/L. These effects were highly species-dependent, with species having prolonged larval development (frogs and salamanders) being more sensitive to PFAS than more rapidly developing species (toads). Our results demonstrate some species could experience sublethal effects at sites with surface waters highly affected by PFAS. Our results also indicate that evaluating PFAS toxicity using a single species is not sufficient for accurate amphibian risk assessment. Future studies are needed to determine whether these differences in susceptibility can be predicted from species life histories and determine whether more commonly occurring environmental levels of PFAS could affect amphibians. &lt;/p&gt;
description: This experiment examined the effects of PFAS on growth and development in American toads, eastern tiger salamanders and northern leopard frogs.
DOI: 10.4231/4aba-tw22
title: Expression of Stay-Green in Dhurrin-Free Sorghum

description: &lt;p&gt;Experiments were conducted to quantify the effects of dhurrin metabolism on stay-green drought tolerance of sorghum. Near isogenic lines (NILs) and near isogenic hybrids (NIHs) with contrasting dhurrin production characteristics were examined under post-flowering drought conditions in controlled and a field production environments. A reduction in chlorophyll content in the dhurrin-free genotype was only noted in one genetic background indicating a genotype-specific response. These studies did not indicate a strong causal relationship between dhurrin biosynthesis and expression of stay-green drought tolerance.&lt;/p&gt;
description: This data examines the effects dhurrin production has on the stay-green trait by utilizing near isogenic lines, near isogenic backcrosses, and near isogenic hybrids varying in dhurrin production.