cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25387/g3.10058657.v1
title: Supplemental Material for Tanaka et al., 2020

description: Table S1. Annotation data of possible missing genes in IR64 genome. Figure S1. Genome alignment between IRGSP-1.0 genome and IR64 scaffolds. Red and blue dots represent forward and reverse alignments, respectively. Figure S2. Chromosome alignments between R498 and IR64 v.1.0. Figure S3. Chromosome alignments between IRGSP-1.0 and IR64 v.1.0. Figure S4. Chromosome alignments of chromosome 6 from 13 Mbp to 19 Mbp. Figure S5. Chromosomal distribution of genes mapped on IR64 v.1.0 unanchored sequences. Figure S6. Fraction of missing genic regions in IR64 covered by paired-end reads obtained from linked-read sequencing of IR64 genome. Figure S7. Distribution of gene ontologies.
DOI: 10.17632/zccf3v5b6k.2
title: Negative Effects of Work-to-family Interference among HK Employees and Spouses
DOI: 10.21227/6zan-2j57
title: Error-Concealed Video Dataset (ECVD)

description: This is a dataset of 120 error-concealed video clips. The clips were generated from 6 CIF, 6 HD and 6 Full-HD test video sequences. Each of those sequences was error concealed with 4 Error Concealment (EC) techniques: Motion Copy, Motion Vector Extrapolation, Decoder Motion Vector Estimation (DMVE) + Boundary Matching Algorithm (BMA), and Adaptive Error Concealment Order Determination (AECOD). The dataset also includes the original (loss free) video clips, as well as the subjective ranking of the error-concealed videos. The original purpose for generating this dataset is to evaluate the performance of various Image/Video Quality Assessment (I/VQA) methods in how well they compare the quality of error-concealed videos. In other words, if the output of EC technique A is a better-quality video than EC technique B, which I/VQA metric predicts this correctly. For more information please refer to the following paper:M. Kazemi, M. Ghanbari, and S. Shirmohammadi, “The Performance of Quality Metrics in Assessing Error-Concealed Video Quality,” IEEE Transactions on Image Processing, accepted March 14 2020, to appear..
DOI: 10.21227/q4jc-f662
title: Error-Concealed Video Dataset (ECVD)

description: This is a dataset of 120 error-concealed video clips. The clips were generated from 6 CIF, 6 HD and 6 Full-HD test video sequences. Each of those sequences was error concealed with 4 Error Concealment (EC) techniques: Motion Copy, Motion Vector Extrapolation, Decoder Motion Vector Estimation (DMVE) + Boundary Matching Algorithm (BMA), and Adaptive Error Concealment Order Determination (AECOD). The dataset also includes the original (loss free) video clips, as well as the subjective ranking of the error-concealed videos. The original purpose for generating this dataset is to evaluate the performance of various Image/Video Quality Assessment (I/VQA) methods in how well they compare the quality of error-concealed videos. In other words, if the output of EC technique A is a better-quality video than EC technique B, which I/VQA metric predicts this correctly. For more information please refer to the following paper:M. Kazemi, M. Ghanbari, and S. Shirmohammadi, “The Performance of Quality Metrics in Assessing Error-Concealed Video Quality,” IEEE Transactions on Image Processing, accepted March 14 2020, to appear..
DOI: 10.21223/p3/zuqhht/sgdgec
title: Material_list.xls

description: :unav
DOI: 10.21223/p3/zuqhht/sjimcr
title: Data_dictionary.xls

description: :unav
DOI: 10.21223/p3/zuqhht/xtluwm
title: Data.xls

description: :unav
DOI: 10.14469/hpc/6995
title: Reverse-phase chromatography mass-spectrometry (negative mode) in serum

description: lipid-targeted reverse-phase chromatography (denoted L in NPC assays) provides maximal resolution of fattyacids, triglycerides, and phospholipids, ionised in negative modes
DOI: 10.21227/dj2d-d777
title: Error-Concealed Video Dataset (ECVD)

description: This is a dataset of 120 error-concealed video clips. The clips were generated from 6 CIF, 6 HD and 6 Full-HD test video sequences. Each of those sequences was error concealed with 4 Error Concealment (EC) techniques: Motion Copy, Motion Vector Extrapolation, Decoder Motion Vector Estimation (DMVE) + Boundary Matching Algorithm (BMA), and Adaptive Error Concealment Order Determination (AECOD). The dataset also includes the original (loss free) video clips, as well as the subjective ranking of the error-concealed videos. The original purpose for generating this dataset is to evaluate the performance of various Image/Video Quality Assessment (I/VQA) methods in how well they compare the quality of error-concealed videos. In other words, if the output of EC technique A is a better-quality video than EC technique B, which I/VQA metric predicts this correctly. For more information please refer to the following paper:M. Kazemi, M. Ghanbari, and S. Shirmohammadi, “The Performance of Quality Metrics in Assessing Error-Concealed Video Quality,” IEEE Transactions on Image Processing, accepted March 14 2020, to appear..
DOI: 10.5281/zenodo.3713314
title: ZeroCostDL4Mic - Noise2Void (2D) example training and test dataset

description: <strong>Name</strong>: ZeroCostDL4Mic - Noise2Void (2D) example training and test dataset (see our Wiki for details) <strong>Data type</strong>: Microscopy images (fluorescence) <strong>Microscopy data type</strong>: Fluorescence microscopy (paxillin-GFP) <strong>Microscope</strong>: Spinning disk confocal microscope with a 63x 1.4 NA objective <strong>Cell type</strong>: U-251 glioma cells, endogenously expressing paxillin-GFP <strong>File format</strong>: .tif (16-bit) <strong>Image size</strong>: 512x512 (Pixel size: 248 nm) <strong>Author(s)</strong>: Aki Stubb<sup>1</sup>, Guillaume Jacquemet<sup>1,2</sup> and Johanna Ivaska<sup>1</sup> <strong>Contact email</strong>: guillaume.jacquemet@abo.fi <strong>Affiliation</strong>: 1) Turku Bioscience Centre, University of Turku and Åbo Akademi University, FI-20520 Turku, Finland 2) Faculty of Science and Engineering, Cell Biology, Åbo Akademi University, 20520 Turku, Finland <br> <strong>Associated publication</strong>: Stubb <em>et al.</em> 2020, Nano letters DOI: 10.1021/acs.nanolett.9b04083 <strong>Funding bodies</strong>: A.S. has been supported by the University of Turku Doctoral programme for Molecular Medicine (TuDMM).
DOI: 10.5281/zenodo.3713315
title: ZeroCostDL4Mic - Noise2Void (2D) example training and test dataset

description: <strong>Name</strong>: ZeroCostDL4Mic - Noise2Void (2D) example training and test dataset (see our Wiki for details) <strong>Data type</strong>: Microscopy images (fluorescence) <strong>Microscopy data type</strong>: Fluorescence microscopy (paxillin-GFP) <strong>Microscope</strong>: Spinning disk confocal microscope with a 63x 1.4 NA objective <strong>Cell type</strong>: U-251 glioma cells, endogenously expressing paxillin-GFP <strong>File format</strong>: .tif (16-bit) <strong>Image size</strong>: 512x512 (Pixel size: 248 nm) <strong>Author(s)</strong>: Aki Stubb<sup>1</sup>, Guillaume Jacquemet<sup>1,2</sup> and Johanna Ivaska<sup>1</sup> <strong>Contact email</strong>: guillaume.jacquemet@abo.fi <strong>Affiliation</strong>: 1) Turku Bioscience Centre, University of Turku and Åbo Akademi University, FI-20520 Turku, Finland 2) Faculty of Science and Engineering, Cell Biology, Åbo Akademi University, 20520 Turku, Finland <br> <strong>Associated publication</strong>: Stubb <em>et al.</em> 2020, Nano letters DOI: 10.1021/acs.nanolett.9b04083 <strong>Funding bodies</strong>: A.S. has been supported by the University of Turku Doctoral programme for Molecular Medicine (TuDMM).
DOI: 10.15468/xoc3ie
title: Revisión taxonómica de Pseudococcus Westwood (Hemiptera: Pseudococcidae) de Centro y Sud América con descripciones de especies nuevas

description: This dataset contains the digitized treatments in Plazi based on the original journal article Willink, María Cristina Granara de, González, Patricia (2018): Revisión taxonómica de Pseudococcus Westwood (Hemiptera: Pseudococcidae) de Centro y Sud América con descripciones de especies nuevas. Insecta Mundi 673: 1-117, DOI: http://doi.org/10.5281/zenodo.3713533
DOI: 10.5286/isis.e.rb2010341-2
title: Neutron diffraction for non-destructive evaluation of composition and microstructure in highly heterogeneous ancient steel from Mongolia

description: Recent analytical research on ancient metal objects recovered in Mongolia revealed that the early bronze and iron-making technologies can be clearly differentiated from those practiced in contemporaneous China. The nomadic life style of Mongolian population was not compatible with the production of large size artistic artefacts, typical of urban centres, therefore they developed a tradition of production of high quality transportable small size artistic objects.Iron artefacts recovered in Mongolia often display evidence of small-scale engineering processes applied to their production. We expect to determine, using neutron diffraction on iron and steel samples, the average carbon content and the texture degree corresponding to the various observed microstructures
DOI: 10.21227/njxj-nz30
title: Robot Dynamics Identification

description: This matlab code allows to reproduce some of the constrained and unconstrained dynamic identification techniques for open-chain robots. Below you can find an summary of the underlying research."Identification of dynamic parameters of robots is a long standing topic in robot control. Recently, the research witnessed a renewal of the activity due to some interesting results concerning issues involving the physical consistency of the obtained parameters leading to constraints, for instance, on mass, first moment of mass and inertia matrix of each rigid link of the robot. This is motivated by high performance required by model-based control of, for example, legged or surgical robots and to obtain realistic simulations of the same systems. The objective of this article is twofold. First, we review and experimentally compare on a Jaco 7 Degrees of Freedom anthropomorphic arm the latest results on the identification of the dynamic parameters which range from Least Mean Squares to constrained non-linear optimisation and Linear-Matrix-Inequality Semi-Definite-Programming methods. Second, motivated by the increasing attention paid to measurable robotics and for the sake of reproducibility, data and code (which can be easily adapted to consider any open-chain manipulator) are made available to the community for improvement and to run further comparisons. As indirect but not less important contribution, this paper provides a first physical fully consistent identified rigid dynamic model of theJaco robot publicly made available to the robotic community."
DOI: 10.5281/zenodo.3713385
title: ZeroCostDL4Mic - Label-free prediction (fnet) example training and test dataset

description: <strong>Name</strong>: ZeroCostDL4Mic - Label-free prediction (fnet) example training and test dataset (see our Wiki for details) <strong>Data type</strong>: 3D paired microscopy images (fluorescence and transmitted light) <strong>Microscopy data type</strong>: Confocal microscopy data (TOM20 labeled with Alexa Fluor 594) <strong>Microscope</strong>: Leica SP8, HC PL APO 63x 1.40 NA oil objective <strong>Cell type</strong>: HeLa (fixed using an organelle-preserving protocol) <strong>File format</strong>: .tif (8-bit) <strong>Image size</strong>: 512 x 512 x 32 (Pixel size: x and y: 90 nm pixel size, z: 150 nm) <strong>Author(s)</strong>: Christoph Spahn <strong>Contact email</strong>: c.spahn@chemie.uni-frankfurt.de, heilemann@chemie.uni-frankfurt.de <strong>Affiliation</strong>: Institute of Physical and Theoretical Chemistry, Goethe-University Frankfurt, Frankfurt, Germany <strong>Associated publications</strong>: Unpublished <br> <strong>Funding body(ies)</strong>: M.H. and C.S.: German Science Foundation (grant nr. SFB1177). C.S.: European Molecular Biology Organization (short term fellowship 8589)
description: This v2 version of the fnet example dataset is a replicate of the v1 dataset where the data has been split in smaller regions of interest (512x512x32 from the 1024x1024x32 in v1).
DOI: 10.5281/zenodo.3713386
title: ZeroCostDL4Mic - Label-free prediction (fnet) example training and test dataset

description: <strong>Name</strong>: ZeroCostDL4Mic - Label-free prediction (fnet) example training and test dataset (see our Wiki for details) <strong>Data type</strong>: 3D paired microscopy images (fluorescence and transmitted light) <strong>Microscopy data type</strong>: Confocal microscopy data (TOM20 labeled with Alexa Fluor 594) <strong>Microscope</strong>: Leica SP8, HC PL APO 63x 1.40 NA oil objective <strong>Cell type</strong>: HeLa (fixed using an organelle-preserving protocol) <strong>File format</strong>: .tif (8-bit) <strong>Image size</strong>: 1024 x 1024 x 32 (Pixel size: x and y: 90 nm pixel size, z: 150 nm) <strong>Author(s)</strong>: Christoph Spahn <strong>Contact email</strong>: c.spahn@chemie.uni-frankfurt.de, heilemann@chemie.uni-frankfurt.de <strong>Affiliation</strong>: Institute of Physical and Theoretical Chemistry, Goethe-University Frankfurt, Frankfurt, Germany <strong>Associated publications</strong>: Unpublished <br> <strong>Funding body(ies)</strong>: M.H. and C.S.: German Science Foundation (grant nr. SFB1177). C.S.: European Molecular Biology Organization (short term fellowship 8589)
DOI: 10.25345/c5xt4p
title: MassIVE MSV000085110 - Metaproteomics of mouse gut microbiomes under different kinds of obesity and morphine treatment
title: Metaproteome of mice under two different kinds of obesity and morphine treatment
DOI: 10.26302/sshade/experiment_bs_20160831_000
title: Vis-NIR spectral bidirectional reflection distribution fonction (SBRDF) of sintered snow (Arselle) and slab ice (3 thicknesses: 1.42, 7.45 and 12.5 mm) on snow at -10°C

description: Vis-NIR BRDF spectra of sintered snow (from Arselle) [i=0, 20, 30, 40, 50, 60, 65°; e=0, 20, 40, 50, 65°; az=0, 45, 90, 140, 160, 180°], of snow with a thin top slab of ice (3 thicknesses: 1.42, 7.45, 12.5mm) [i=40, 50, 60, 70°; e=0, 10, 20°; az=0, 45, 90, 140, 160, 180°], and of the specular peak of the 12.5mm slab [i=50, e=50°$\pm$5°; i=65°, e=65°$\pm$5°; az=170-180°] - T = -10°C
DOI: 10.15468/ezrjd2
title: New state records for Coniopterygidae (Neuroptera) with an updated list of species in North America north of Mexico

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ferro, Michael L. (2018): New state records for Coniopterygidae (Neuroptera) with an updated list of species in North America north of Mexico. Insecta Mundi 668: 1-20, DOI: http://doi.org/10.5281/zenodo.3713451
DOI: 10.5286/isis.e.rb2000039-2
title: Using Neutron Resonance Imaging to Spatially Resolve the Strontium Distribution in LSCO Superconductor

description: Superconducting LSCO samples have shown broad transition temperature ranges, which is suspected to be caused by inhomogeneous strontium doping of the sample. Through the use of neutron resonance imaging we can spatially resolve the strontium and lanthanum concentrations in the sample, and directly see how it correlates with the spatial distribution of transition temperature. The information obtained will aid in the characterisation and production of high quality superconductors, such that the effect of inhomogeneous doping can be separated from other effects that need to be investigated.
DOI: 10.21223/p3/rk5swa/3lmdpu
title: Agronomy_DataDictionary.tab

description: :unav
DOI: 10.14469/hpc/6996
title: 2-isopropyl-5-methylphenyl docosanoate

description: Reaction of thymol with lignoceric acid producing an off-white solid at room temperature. Suggested name for resulting ester: Thymyl lignocerate. NMR in deuterated trichloromethane. Impurities: Hexane, trichloromethane, ethyl acetate, thymol, lignoceric acid.
DOI: 10.15468/y0ouub
title: Taxonomic study and population variation of scale insects (Hemiptera: Coccidae and Diaspididae) and associated parasitoids (Hymenoptera: Chalcidoidea) in an olive grove at Rio Grande do Sul, Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wolff, Vera R. S., Efrom, Caio F. S., Aquino, Daniel A., Tonietto, Adilson (2018): Taxonomic study and population variation of scale insects (Hemiptera: Coccidae and Diaspididae) and associated parasitoids (Hymenoptera: Chalcidoidea) in an olive grove at Rio Grande do Sul, Brazil. Insecta Mundi 669: 1-8, DOI: http://doi.org/10.5281/zenodo.3713466
DOI: 10.21223/p3/cp42sk/5mfjwi
title: Material_list.xls

description: :unav
DOI: 10.15468/gos5l0
title: Remarks on the subgenus Cylinderina Rivalier (Coleoptera: Cicindelidae: Cylindera) from the Philippines with description of a new species 144. Contribution towards the knowledge of the Cicindelidae

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wiesner, Jürgen, Dheurle, Charles (2018): Remarks on the subgenus Cylinderina Rivalier (Coleoptera: Cicindelidae: Cylindera) from the Philippines with description of a new species 144. Contribution towards the knowledge of the Cicindelidae. Insecta Mundi 670: 1-16, DOI: http://doi.org/10.5281/zenodo.3713472
DOI: 10.21223/p3/cp42sk/ug6ubs
title: Data.xls

description: :unav
DOI: 10.21223/p3/cp42sk/xc5fyx
title: Data_dictionary.xls

description: :unav
DOI: 10.21223/p3/dccpqh/engccm
title: Data_dictionary.xls

description: :unav
DOI: 10.21223/p3/dccpqh/ixn71s
title: MINICORE 2017 NOTES.pdf

description: :unav
DOI: 10.21223/p3/dccpqh/qorjeb
title: MINICORE 2017 DATA SET.xls

description: :unav
DOI: 10.5281/zenodo.3701935
title: Coupled nitrate and phosphate availability facilitated the expansion of eukaryotic life at ca. 1.56 Ga

description: The file includes supplementary data table S1-S3 for the paper titled "Coupled nitrate and phosphate availability facilitated the expansion of eukaryotic life at ca. 1.56 Ga" submitted to 'Journal of Geophysical Research - Biogeosciences'.
DOI: 10.5281/zenodo.3714161
title: Cactusolo/Rosids_AJB-D-19-00298 v1.0.3

description: The 3rd release including data, updated scripts, and read me for Rosids_AJB-D-19-00298 added in doi from zenodo
DOI: 10.15468/tfqebi
title: Notes on the natural history of Enaphalodes archboldi Lingafelter and Chemsak, 2002 and E. bingkirki Lingafelter and Santos-Silva, 2018 (Coleoptera: Cerambycidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vlasak, Josef (2018): Notes on the natural history of Enaphalodes archboldi Lingafelter and Chemsak, 2002 and E. bingkirki Lingafelter and Santos-Silva, 2018 (Coleoptera: Cerambycidae). Insecta Mundi 671: 1-8, DOI: http://doi.org/10.5281/zenodo.3713489
DOI: 10.5281/zenodo.3701934
title: Coupled nitrate and phosphate availability facilitated the expansion of eukaryotic life at ca. 1.56 Ga

description: The file includes supplementary data table S1-S3 for the paper titled "Coupled nitrate and phosphate availability facilitated the expansion of eukaryotic life at ca. 1.56 Ga" submitted to 'Journal of Geophysical Research - Biogeosciences'.
DOI: 10.5281/zenodo.3713342
title: Dataset related to article "Chemotherapy accelerates immune-senescence and functional impairments of Vδ2pos T cells in elderly patients affected by liver metastatic colorectal cancer."

description: Human (gamma delta) γδ T cells are unconventional innate-like lymphocytes displaying a broad array of anti-tumor activities with promising perspectives in cancer immunotherapy. In this context, Vδ2<sup>pos</sup> T cells represent the preferential target of several immunotherapy protocols against solid tumors. However, the impact of both aging and chemotherapy (CHT) on Vδ2<sup>pos</sup> T cells is still unknown. The present study evaluates with multi-parametric flow cytometry the frequencies, terminal differentiation, senescence and effector-functions of peripheral blood and tumor infiltrating Vδ2<sup>pos</sup> T cells purified from liver metastases (CLM) of patients affected by colorectal cancer (CRC) compared to those of sex- and age-matched healthy donors. The peripheral blood of CLM patients underwent CHT is characterized by decreased amounts of Vδ2<sup>pos</sup> T cells showing a relative increase of terminally-differentiated CD27<sup>neg</sup>/CD45RA<sup>pos</sup> (T<sub>EMRA</sub>) cells. The enrichment of this latter subset is associated with an increased expression of the senescent marker CD57. The acquisition of CD57 on T<sub>EMRA</sub> Vδ2<sup>pos</sup> T cells is also coupled with impairments in cytotoxicity and production of TNF-α and IFN-γ. These features resemble the acquisition of an immune-senescent profile by Vδ2<sup>pos</sup> T cells from CLM patients that received CHT, a phenomenon that is also associated with the loss of the co-stimulatory marker CD28 and with the induced expression of CD16. The group of CLM patients underwent CHT and older than 60 years old showed higher frequencies of CD57<sup>pos</sup> and T<sub>EMRA</sub> Vδ2<sup>pos</sup> T cells. Similar results were found for tumor infiltrating Vδ2<sup>pos</sup> T cell subset purified from CLM specimens of patients treated with CHT. The toxicity of CHT regimens also affects the homeostasis of Vδ2<sup>pos</sup> T cells by inducing higher frequencies of circulating CD57<sup>pos</sup> T<sub>EMRA</sub> subset in CLM underwent CHT and younger than 60 years old. Taken together, our data demonstrate that the enrichment of senescent Vδ2<sup>pos</sup> T cells in CLM patients is not only induced by patients' aging but also by the toxicity of CHT that further accelerates the accumulation of CD57<sup>pos</sup> T<sub>EMRA</sub> cells highly dysfunctional in their anti-tumor activities. These results are important to both predict the clinical outcome of CLM and to optimize those protocols of cell cancer immunotherapy employing unconventional Vδ2<sup>pos</sup> T cells.