cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5125qd3x
title: MassIVE Reanalysis RMSV000000436.3 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080865/PXD001203 [1 out of 9] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5wd3q49p
title: MassIVE Reanalysis RMSV000000484.2 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080835/PXD001194 [1 out of 5] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5281/zenodo.6373185
title: 论文实证研究中使用的材料

description: 此处包含论文中实证研究用到的材料。 文件目录如下:<br> +-- 建模场景描述<br> | +-- 建模场景描述1.txt<br> | +-- 建模场景描述2.txt<br> +-- 调查问卷.pdf<br> +-- iStar教学幻灯片.pdf<br> +-- 说明文档.txt 1. 受控实验中使用的“建模场景描述”所在文件目录:<br> /建模场景描述 2. 受控实验中使用的调查问卷:<br> /调查问卷.pdf 3. 受控实验和案例研究中使用的 iStar 教学幻灯片:<br> /iStar教学幻灯片.pdf 4. 本数据集说明文档:<br> /说明文档.txt<br>
DOI: 10.25345/c5rn30b6d
title: MassIVE Reanalysis RMSV000000536.4 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080685/PXD004682 [3 out of 7] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5mw28j3r
title: MassIVE Reanalysis RMSV000000362.46 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000081607 Confetti, GluC-Elastase HCD [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5h41jq99
title: MassIVE Reanalysis RMSV000000441.6 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080814/PXD003668 [4 out of 10] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5cc0tx4p
title: MassIVE Reanalysis RMSV000000592.21 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000083508 29 tissues, placenta Trypsin_HCD_QExactiveplus [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c57m04397
title: MassIVE Reanalysis RMSV000000512.3 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080829/PXD004163 [3 out of 5] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c53t9d961
title: MassIVE Reanalysis RMSV000000592.22 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000083508 29 tissues, tonsil Arg-C_HCD_QExactiveHF [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5057cw5h
title: MassIVE Reanalysis RMSV000000366.32 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000086387 A Quantitative Proteome Map of the Human Body, TMT10 MS3 [Mixture: 12] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5vd6p811
title: MassIVE Reanalysis RMSV000000394.5 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080843/PXD003790 [5 out of 6] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5qn5zf8r
title: MassIVE Reanalysis RMSV000000393.5 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080833/PXD001608 [1 out of 6] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5kw57n40
title: MassIVE Reanalysis RMSV000000369.15 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080757/PXD002619 [24 out of 24] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5g44ht92
title: MassIVE Reanalysis RMSV000000387.10 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080826/PXD003947 [9 out of 10] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5bc3t14v
title: MassIVE Reanalysis RMSV000000362.47 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000081607 Confetti, GluC-Chymotrypsin CID [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c56m3371k
title: MassIVE Reanalysis RMSV000000458.3 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080770/PXD005210 [2 out of 4] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5281/zenodo.6366105
title: GEOS CCM free-running simulation data of the Pacific-Northwest pyrocumulonimbus Event-like aerosol injection, SWIRL selection

description: Data from GEOS CCM free running simulation of the Pacific-Northwest pyrocumulonimbus Event. The simulations have been designed and performed by Sampa Das and Peter R. Colarco at the NASA Center for Climate Simulations; the computing resources supporting the simulations shown in this work were provided by the NASA High-End Computing (HEC) Program through the NASA Center for Climate Simulation (NCCS) at the Goddard Space Flight Center. The datasets stored here have been generated by Giorgio Doglioni starting from the whole results of the simulations. The files are in hdf5 format and their structure and content is described in the README file.
DOI: 10.5281/zenodo.6320539
title: WTP Flood Mental Health

description: Data and questionnaire on the willingness to pay to reduce mental health consequences from flooding through collective flood defence. Data collected in the Basque Country, Spain in 2015. Associated article Foudi, S. and Osés-Eraso, N. 2022. Information, experience and willingness to mitigate mental health consequences from flooding through collective defence. Water Resources Research 58, https://doi.org/10.1029/2021WR031357
DOI: 10.5281/zenodo.5948589
title: WTP Flood Mental Health

description: Data and questionnaire on the willingness to pay to reduce mental health consequences from flooding through collective flood defence. Data collected in the Basque Country, Spain in 2015. Associated article Foudi, S. and Osés-Eraso, N. 2022. Information, experience and willingness to mitigate mental health consequences from flooding through collective defence. Water Resources Research 58, https://doi.org/10.1029/2021WR031357
DOI: 10.5285/2cfa78b1-b7a1-411d-89e5-90490482be79
title: List of Early Cenozoic fossil taxa from Antarctica, Western Europe and US Gulf Coast

description: This dataset comprises lists of fossil species from a polar region (Seymour Island, Antarctic Peninsula) and two tropical regions (Western Europe and US Gulf Coast) during the Early Cenozoic era. The dataset begins in the Late Maastrichtian epoch of the Cretaceous period, extends across the mass extinction event at the Cretaceous/Paleogene (K/Pg) boundary, and terminates in the late Middle Eocene (i.e., a timespan of some 30 Myr from approximately 70 to 40 Ma ago). The lists are based on four of the commonest types of fossil found at the time: two of these are bivalve molluscs and two are gastropod molluscs. Within each group (or taxonomic clade), the fossils are listed by family, starting with the taxonomically most primitive and ending with the most recent (or derived). Both genus and species names are given. The data were collected in various stages between 2009 and 2021. These lists were used to compare patterns of mass extinction across the K/Pg boundary and then subsequent evolutionary radiation of these four groups through the first 25 Myr of the Cenozoic era. Full details of this study are given in: Crame, J.A. & McGowan, A. J. In press. Origin of the tropical-polar biodiversity contrast. Global Ecology and Biogeography. This project was funded partly through NERC grant NE/I005803/1 and partly through BAS/NERC core funds.
description: The database was compiled from published papers and catalogues, together with reference fossil collections housed in the UK, Europe, USA and New Zealand. Full reference to all these sources are given in the cited paper. The Paleobiology Database (paleobiodb.org) was consulted and proved to be an invaluable source of published references, but no large downloads of raw data were made from it. Antarctic data collected from Seymour Island, Antarctic Peninsula: 64.28306 S, 56.75 W. This is one of the best exposures of Late Cretaceous - Early Paleogene sedimentary exposures anywhere in the Southern Hemisphere. These rocks are intensely fossiliferous and have been the subject of extensive scientific interest for more than 100 years. Western Europe data based mainly on the Paris Basin, but with some material from both Belgium and western Poland. US Gulf Coast data essentially from eastern Texas to eastern Alabama. Full locality information given in Crame, J.A. & McGowan, A. J. In press. Origin of the tropical- polar biodiversity contrast. Global Ecology and Biogeography.
description: All species lists were checked carefully for taxonomic uniformity and the classification scheme adopted was taken from the latest references (Crame, J.A. & McGowan, A. J. In press). Doubtful identifications were excluded.
DOI: 10.5281/zenodo.5547275
title: Acanthamoeba castellanii genome assembly and infection by Legionella pneumophila

description: Data associated with the publication "<em>Regulation of the Acanthamoeba castellanii genome upon infection by Legionella pneumophila</em>". The record contains 4 archives, each associated with a github repository, and a "shared assets" archive, which contains processed files used by some repositories. The code from github repositories is embedded in each tarball, along with input and output data. Analyses are organized as independent snakemake pipelines for each part. For convenient reanalysis, genomes, annotations and merged contact maps used in the publication can be found in the `shared_assets.tar.gz` archive. The infection analysis results are located in the `data/output` folder of Acastellanii_legionella_infection.tar.gz. All archives can be downloaded at the bottom of the page. <strong>Hybrid genome assembly:</strong> Genome assembly pipeline code and output data used for the assembly of 2 <em>A. castellanii</em> strains (Neff and C3) through a hybrid pipeline combining Illumina shotgun, Hi-C and Oxford Nanopore long reads. Github: https://github.com/cmdoret/Acastellanii_hybrid_assembly Archive: Acastellanii_hybrid_assembly.tar.gz <strong>Genome annotation:</strong> Genome annotation pipeline used for functional annotation of <em>A. castellanii</em> strains C3 and Neff, and associated output files. Github: https://github.com/cmdoret/Acastellanii_genome_annotation Archive: Acastellanii_genome_annotation.tar.gz <strong>Genome analyses:</strong> Code and data related to general analyses of genomic properties of <em>A. castellanii</em> strains C3 and Neff. Github: https://github.com/cmdoret/Acastellanii_genome_analysis Archive: Acastellanii_genome_analysis.tar.gz <strong>Infection analyses:</strong> Code and data related to the analysis of structural changes in the <em>A. castellanii</em> C3 genome during infection by <em>L. pneumophila</em>. Github: https://github.com/cmdoret/Acastellanii_legionella_infection Archive: Acastellanii_legionella_infection.tar.gz<br> <strong>Shared assets:</strong> This archive contains processed files (genomes, annotations, Hi-C matrices, differential expression results) which can be useful for reanalysis, and are automatically pulled when executing the pipeline of some repositories. Archive: shared_assets.tar.gz<br>
DOI: 10.25345/c52z12t0r
title: MassIVE Reanalysis RMSV000000382.34 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080596/PXD004242 [13 out of 51] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5281/zenodo.6367101
title: Data supporting "Solar radiation drives methane emissions from the shoots of Scots pine"

description: Data supporting our New Phytologist publication "Solar radiation drives methane emissions from the shoots of Scots pine".
DOI: 10.5281/zenodo.6367100
title: Data supporting "Solar radiation drives methane emissions from the shoots of Scots pine"

description: Data supporting our New Phytologist publication "Solar radiation drives methane emissions from the shoots of Scots pine".
DOI: 10.25345/c5z60c56z
title: MassIVE Reanalysis RMSV000000618.14 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000081649/PXD006833 [4 out of 19] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5pn8xj8h
title: MassIVE Reanalysis RMSV000000398.9 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000086899 SubCellBarcode Scalable proteome-wide mapping of protein localization and relocalization [BioReplicate: MVYB_Subcell_HCC827_Re-2_HF_20161110_TMT_300ugIPG37-49_7of15ul] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5td9nc28
title: MassIVE Reanalysis RMSV000000473.12 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000079830/PXD000815 [14 out of 17] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5jw86r38
title: MassIVE Reanalysis RMSV000000405.5 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000079399 [4 out of 9] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5f47gx8b
title: MassIVE Reanalysis RMSV000000362.48 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000081607 Confetti, GluC-Elastase-Trypsin HCD [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.