cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/c6uc4d
title: Phylogeny, taxonomy and flower-breeding ecology of the Colocasiomyia cristata species group (Diptera: Drosophilidae), with descriptions of ten new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Takano, Kohei Takenaka, Gao, Jian-Jun, Hu, Yao-Guang, Li, Nan-Nan, Yafuso, Masako, Suwito, Awit, Repin, Rimi, Pungga, Runi Anak Sylvester, Meleng, Paulus Ak, Kaliang, Clement Het, Chong, Lucy, Toda, Masanori J. (2021): Phylogeny, taxonomy and flower-breeding ecology of the Colocasiomyia cristata species group (Diptera: Drosophilidae), with descriptions of ten new species. Zootaxa 5079 (1): 1-70, DOI: https://doi.org/10.11646/zootaxa.5079.1.1
DOI: 10.6084/m9.figshare.17192966
title: Compuestos candidatos

description: Contiene 171 moléculas colorantes
DOI: 10.6084/m9.figshare.17192966.v2
title: Compuestos candidatos

description: Contiene 171 moléculas colorantes
DOI: 10.6084/m9.figshare.17192966.v1
title: Colorantes obtenidos

description: Contiene 184 moléculas colorantes
DOI: 10.6084/m9.figshare.17212850
title: Source_Data.xlsx

description: Data used to prepare the figures of the manuscript by A. Seck and co-authors in Communications Biology 2021/2022.<br>
DOI: 10.15468/aq33qh
title: Nesobasis rito sp. nov. (Zygoptera: Coenagrionidae), a new species of forest damselfly from Vanua Levu, Fiji

description: This dataset contains the digitized treatments in Plazi based on the original journal article Rivas-Torres, Anais, Rashni, Bindiya, Waqa-Sakiti, Hilda, Tuiwawa, Marika, Lorenzo-Carballa, María Olalla, Beatty, Christopher D., Cordero-Rivera, Adolfo (2021): Nesobasis rito sp. nov. (Zygoptera: Coenagrionidae), a new species of forest damselfly from Vanua Levu, Fiji. Zootaxa 5082 (2): 101-117, DOI: https://doi.org/10.11646/zootaxa.5082.2.1
DOI: 10.6084/m9.figshare.17185799
title: Conjuntos de datos iniciales de colorantes

description: Contiene moléculas colorantes
DOI: 10.6084/m9.figshare.17185799.v2
title: Conjuntos de datos iniciales de colorantes

description: Contiene moléculas colorantes
DOI: 10.6084/m9.figshare.17185799.v1
title: Dye_datasets

description: Contains dye molecules
DOI: 10.6084/m9.figshare.17212856
title: Data used to create figures

description: All datasets used to create graphs and charts for ALMA paper<br>
DOI: 10.5281/zenodo.5767294
title: Suplemental data for material radiopurity control in the XENONnT experiment

description: The selection of low-radioactive construction materials is of the utmost importance for rare-event searches and thus critical to the XENONnT experiment. Results of an extensive radioassay program are reported, in which material samples have been screened with gamma-ray spectroscopy and mass spectrometry. Several live years of data, aggregated across all instruments, were acquired throughout the radioassay program of XENONnT. Relevant measurements for detector construction are covered in the manuscript '<strong>Material radiopurity control in the XENONnT experiment</strong>' (<em>arxiv:2112.05629v1</em>) . Supplemental data is available in here. <strong>NOTE:</strong> Current screening results are only preliminary, and contain a small set of the overall screened dataset.
DOI: 10.5281/zenodo.5786213
title: ECCO v4 standard analysis sample (v4r3)

description: This version was generated in Julia from the ECCO output (version 4, release 3) available at https://www.ecco-group.org
DOI: 10.5281/zenodo.5786083
title: Lagrangian Sequestration Efficiency Trajectories and Extracted Particle Metrics – 1000m Y7 & Y8

description: A dataset of Lagrangian trajectories used to estimate North Atlantic sequestration efficiency and extracted metrics for the re-entrained and sequestered particles. All variables have long names and units. These files have been used for the analysis in Baker et al. ‘Biological carbon pump sequestration efficiency in the North Atlantic: a leaky or a long-term sink?’ with further information about the methodology available in the paper. Due to the size of the datasets, each DOI only contains two files. This dataset contains the 1000m particles releases for the years 2002 (Y7) and 2003 (Y8).
DOI: 10.5281/zenodo.5786082
title: Lagrangian Sequestration Efficiency Trajectories and Extracted Particle Metrics – 1000m Y7 & Y8

description: A dataset of Lagrangian trajectories used to estimate North Atlantic sequestration efficiency and extracted metrics for the re-entrained and sequestered particles. All variables have long names and units. These files have been used for the analysis in Baker et al. ‘Biological carbon pump sequestration efficiency in the North Atlantic: a leaky or a long-term sink?’ with further information about the methodology available in the paper. Due to the size of the datasets, each DOI only contains two files. This dataset contains the 1000m particles releases for the years 2002 (Y7) and 2003 (Y8).
DOI: 10.6084/m9.figshare.17212880
title: CKD and uremic toxins

description: All data from manuscript investigating kidney function after treatement to reduce protein bound uremic toxins in experimental CKD
DOI: 10.6084/m9.figshare.17212880.v1
title: CKD and uremic toxins

description: All data from manuscript investigating kidney function after treatement to reduce protein bound uremic toxins in experimental CKD
DOI: 10.15468/fn9apc
title: The genus Neotrichia Morton 1905 (Trichoptera: Hydroptilidae) in Pará state Northern Brazil: New species and an unpublished species made available

description: This dataset contains the digitized treatments in Plazi based on the original journal article Neto, Jaime De Liege Gama, Ribeiro, José Moacir Ferreira, Passos, Mahedy Araujo Bastos (2021): The genus Neotrichia Morton 1905 (Trichoptera: Hydroptilidae) in Pará state Northern Brazil: New species and an unpublished species made available. Zootaxa 5082 (2): 118-128, DOI: https://doi.org/10.11646/zootaxa.5082.2.2
DOI: 10.5281/zenodo.5758778
title: CCE LTER P1908 Upwelling Filament Ocean Acidification Phytoplankton Iron Incubation Experiments

description: Metatranscriptome assembly, read counts, and annotations from four sets of trace metal clean ocean acidification experimeints in the California Current Ecosystem. Experiments were conducted during August 2019 as part of the CCE LTER program. Samples were collected at the initial time point (T0), and three pCO<sub>2</sub> treatments (400, 800, and 1200 ppm) with two time points for each experiment. Poly-A selected mRNA was sequenced on an Illumina NovaSeq 6000 and then assembled with Trinity for each separate experiment. Proteins from the assembly were then predicted with Genemark S-T. Taxonomic annotation was performed with DIAMOND BLASTP searches against PhyloDB v1.076 and based on the Lineage Proability Index from the top hits. Functional annotation was similarly performed using KEGG with KEGG Orthology annotation based on KofamKOALA results. Read quantification was conducted with Bowtie2. Predicted proteins from each assembly is provided in fasta format. The read counts and annotations for each experiment are in tab-delimited files.
DOI: 10.5281/zenodo.5758777
title: CCE LTER P1908 Upwelling Filament Ocean Acidification Phytoplankton Iron Incubation Experiments

description: Metatranscriptome assembly, read counts, and annotations from four sets of trace metal clean ocean acidification experimeints in the California Current Ecosystem. Experiments were conducted during August 2019 as part of the CCE LTER program. Samples were collected at the initial time point (T0), and three pCO<sub>2</sub> treatments (400, 800, and 1200 ppm) with two time points for each experiment. Poly-A selected mRNA was sequenced on an Illumina NovaSeq 6000 and then assembled with Trinity for each separate experiment. Proteins from the assembly were then predicted with Genemark S-T. Taxonomic annotation was performed with DIAMOND BLASTP searches against PhyloDB v1.076 and based on the Lineage Proability Index from the top hits. Functional annotation was similarly performed using KEGG with KEGG Orthology annotation based on KofamKOALA results. Read quantification was conducted with Bowtie2. Predicted proteins from each assembly is provided in fasta format. The read counts and annotations for each experiment are in tab-delimited files.
DOI: 10.6084/m9.figshare.11714394
title: Perceived sleep problems after spinal cord injury: Results from a community-based survey in Switzerland

description: <b>Objective:</b> To investigate the burden of sleep problems within the Spinal Cord injured (SCI) community with respect to the general population (GP) in Switzerland. The study further explored potential predictors for receiving treatment for sleep problems after SCI. <b>Design:</b> Cross-sectional study. <b>Setting:</b> SCI community in Switzerland. <b>Participants:</b> Individuals diagnosed with an SCI, aged 16 years or older that permanently reside in Switzerland (<i>N</i> = 1549). <b>Interventions:</b> Not applicable. <b>Outcome measures:</b> Perceived sleep problems within the SCI community and GP. For those with sleep problems and SCI, an indicator for having received treatment was measured. <b>Results:</b> 58.8% of survey participants indicated having a sleep problem; 69.4% of those with a sleep problem did not indicate receiving treatment. Amongst people living with an SCI, individuals between the ages of 46–60 years (adjusted Odds Ratio, OR = 3.07; 95% CI 1.54–6.16), participants reporting severe financial hardship (OR = 2.90; 95% CI) 1.69–4.96, and those that indicated having pain (OR = 5.62; 95% CI 3.52–8.98) were more likely to have a chronic sleep problem. In comparison to the Swiss GP, the prevalence of having a sleep problem was 18% higher among persons with SCI, with the largest discrepancy for males with paraplegia between the ages of 46–60 years (Prevalence ratio, PR = 1.28; 95% CI, 1.21–1.36). <b>Conclusion:</b> Individuals with SCI experience more sleep problems compared to the Swiss GP. Findings from this study suggest that clinical screening for sleep issues targeting high risk groups is needed to reduce the large prevalence of non-treatment in individuals with SCI.
DOI: 10.6084/m9.figshare.11714394.v1
title: Perceived sleep problems after spinal cord injury: Results from a community-based survey in Switzerland

description: <b>Objective:</b> To investigate the burden of sleep problems within the Spinal Cord injured (SCI) community with respect to the general population (GP) in Switzerland. The study further explored potential predictors for receiving treatment for sleep problems after SCI. <b>Design:</b> Cross-sectional study. <b>Setting:</b> SCI community in Switzerland. <b>Participants:</b> Individuals diagnosed with an SCI, aged 16 years or older that permanently reside in Switzerland (<i>N</i> = 1549). <b>Interventions:</b> Not applicable. <b>Outcome measures:</b> Perceived sleep problems within the SCI community and GP. For those with sleep problems and SCI, an indicator for having received treatment was measured. <b>Results:</b> 58.8% of survey participants indicated having a sleep problem; 69.4% of those with a sleep problem did not indicate receiving treatment. Amongst people living with an SCI, individuals between the ages of 46–60 years (adjusted Odds Ratio, OR = 3.07; 95% CI 1.54–6.16), participants reporting severe financial hardship (OR = 2.90; 95% CI) 1.69–4.96, and those that indicated having pain (OR = 5.62; 95% CI 3.52–8.98) were more likely to have a chronic sleep problem. In comparison to the Swiss GP, the prevalence of having a sleep problem was 18% higher among persons with SCI, with the largest discrepancy for males with paraplegia between the ages of 46–60 years (Prevalence ratio, PR = 1.28; 95% CI, 1.21–1.36). <b>Conclusion:</b> Individuals with SCI experience more sleep problems compared to the Swiss GP. Findings from this study suggest that clinical screening for sleep issues targeting high risk groups is needed to reduce the large prevalence of non-treatment in individuals with SCI.
DOI: 10.6084/m9.figshare.7049021
title: Multimorbidity of overweight and obesity alongside anxiety and depressive disorders in individuals with spinal cord injury

description: To compare the prevalence of anxiety/depression and overweight/obesity (Aim 1) and the multimorbidity of these conditions (Aim 2) in a sample of adults with and without spinal cord injury (SCI). Aim 3 was to examine whether overweight/obese individuals with SCI differ on the prevalence of anxiety/depressive disorders compared to non-overweight/obese individuals with SCI. Retrospective cohort study. Individuals ≥16 years old who had patient encounters between January 1, 2011, and February 28, 2018. In total, 761 598 individuals were included, of which 3136 had SCI. Individuals were identified as diagnosed with SCI, anxiety and/or depressive disorders, and overweight/obesity using the International Classification of Diseases. Age-adjusted odds ratios (ORs) were calculated using logistic regression. In contrast to non-SCI individuals, those with SCI had increased odds of anxiety disorders (OR: 3.58, 95% CI [3.29–3.90]), depressive disorders (OR: 4.33, 95% CI [3.95–4.74]), and overweight/obesity (OR: 3.08, 95% CI [2.80–3.38]). Pertaining to multimorbidity, individuals with SCI had increased odds of having overweight/obesity alongside anxiety disorders (OR: 4.30, 95% CI [3.71–4.98]) and overweight/obesity alongside depressive disorders (OR: 4.69, 95% CI [4.01–5.47]) compared to those without SCI. Individuals with SCI who were diagnosed as overweight/obese had increased odds of having anxiety disorders (OR: 2.54, 95% CI [2.06–3.13]), and depressive disorders (OR: 2.70, 95% CI [2.18–3.36]), relative to non-overweight/obese individuals with SCI. This work is among the first to find evidence that individuals with SCI are at heightened odds of overweight/obesity alongside anxiety and/or depressive disorders. This early work holds clinical implications for treating these interrelated comorbidities in SCI.
DOI: 10.6084/m9.figshare.7049021.v1
title: Multimorbidity of overweight and obesity alongside anxiety and depressive disorders in individuals with spinal cord injury

description: To compare the prevalence of anxiety/depression and overweight/obesity (Aim 1) and the multimorbidity of these conditions (Aim 2) in a sample of adults with and without spinal cord injury (SCI). Aim 3 was to examine whether overweight/obese individuals with SCI differ on the prevalence of anxiety/depressive disorders compared to non-overweight/obese individuals with SCI. Retrospective cohort study. Individuals ≥16 years old who had patient encounters between January 1, 2011, and February 28, 2018. In total, 761 598 individuals were included, of which 3136 had SCI. Individuals were identified as diagnosed with SCI, anxiety and/or depressive disorders, and overweight/obesity using the International Classification of Diseases. Age-adjusted odds ratios (ORs) were calculated using logistic regression. In contrast to non-SCI individuals, those with SCI had increased odds of anxiety disorders (OR: 3.58, 95% CI [3.29–3.90]), depressive disorders (OR: 4.33, 95% CI [3.95–4.74]), and overweight/obesity (OR: 3.08, 95% CI [2.80–3.38]). Pertaining to multimorbidity, individuals with SCI had increased odds of having overweight/obesity alongside anxiety disorders (OR: 4.30, 95% CI [3.71–4.98]) and overweight/obesity alongside depressive disorders (OR: 4.69, 95% CI [4.01–5.47]) compared to those without SCI. Individuals with SCI who were diagnosed as overweight/obese had increased odds of having anxiety disorders (OR: 2.54, 95% CI [2.06–3.13]), and depressive disorders (OR: 2.70, 95% CI [2.18–3.36]), relative to non-overweight/obese individuals with SCI. This work is among the first to find evidence that individuals with SCI are at heightened odds of overweight/obesity alongside anxiety and/or depressive disorders. This early work holds clinical implications for treating these interrelated comorbidities in SCI.
DOI: 10.5281/zenodo.5786229
title: ECCO v4 standard analysis sample (v4r4)

description: This version was generated in Julia from the ECCO output (version 4, release 4) available at https://www.ecco-group.org
DOI: 10.6084/m9.figshare.14379656
title: Exploring attitudes about evidence-based practice among speech-language pathologists: A survey of Japan and Malaysia

description: <i>Purpose:</i> To investigate speech-language pathologists' current perceptions, previous training experiences, resources, barriers, and training needs in terms of evidence-based practices (EBPs) in two Asian countries. <i>Method:</i> Their knowledge and attitudes about EBP were explored using an online questionnaire. A descriptive analysis was conducted with consideration of the effect of demographic variables on knowledge and attitudes about EBP. <i>Result:</i> Malaysian speech-language pathologists (<i>n</i> = 98) displayed more positive attitudes toward EBPs, with a significantly higher (<i>t</i> (143) = 5.91, <i>p</i> &lt; .01) total mean score (Mean = 120.7, <i>SD</i> = 11) compared to the Japanese speech-language pathologists (<i>n</i> = 47, Mean = 107.8, SD = 13.5). Malaysian practitioners who were female, worked full-time, and worked in government settings reported higher motivation to develop EBP skills. Japanese practitioners who worked in private sectors reported higher EBPs training needs than those in government settings. In both countries, speech-language pathologists with higher education levels tended to express fewer perceived barriers towards EBP. <i>Conclusion:</i> Findings could help local governance and speech-language pathologist associations to understand the current practices and professional development needs of speech-language pathologists, leading to more effective training programs and educating employers and managers who can reinforce EBP among practitioners.
DOI: 10.6084/m9.figshare.14379656.v1
title: Exploring attitudes about evidence-based practice among speech-language pathologists: A survey of Japan and Malaysia

description: <i>Purpose:</i> To investigate speech-language pathologists' current perceptions, previous training experiences, resources, barriers, and training needs in terms of evidence-based practices (EBPs) in two Asian countries. <i>Method:</i> Their knowledge and attitudes about EBP were explored using an online questionnaire. A descriptive analysis was conducted with consideration of the effect of demographic variables on knowledge and attitudes about EBP. <i>Result:</i> Malaysian speech-language pathologists (<i>n</i> = 98) displayed more positive attitudes toward EBPs, with a significantly higher (<i>t</i> (143) = 5.91, <i>p</i> &lt; .01) total mean score (Mean = 120.7, <i>SD</i> = 11) compared to the Japanese speech-language pathologists (<i>n</i> = 47, Mean = 107.8, SD = 13.5). Malaysian practitioners who were female, worked full-time, and worked in government settings reported higher motivation to develop EBP skills. Japanese practitioners who worked in private sectors reported higher EBPs training needs than those in government settings. In both countries, speech-language pathologists with higher education levels tended to express fewer perceived barriers towards EBP. <i>Conclusion:</i> Findings could help local governance and speech-language pathologist associations to understand the current practices and professional development needs of speech-language pathologists, leading to more effective training programs and educating employers and managers who can reinforce EBP among practitioners.
DOI: 10.6084/m9.figshare.14333366
title: The impact of cognitive decline in amyotrophic lateral sclerosis on swallowing. A scoping review

description: <i>Purpose</i>: Impaired swallowing is a serious symptom of amyotrophic lateral sclerosis (ALS) impacting on health and wellbeing. Little is known about how cognitive impairment in amyotrophic lateral sclerosis impacts on oropharyngeal swallowing. A scoping review was undertaken to explore how cognitive impairment impacts on a person living with ALS’s (plwALS) ability to understand and manage oropharyngeal swallowing function. <i>Method</i>: Subject headings and keywords were searched across MEDLINE, SCOPUS, CINAHL, PsychINFO, Emcare and Google Scholar in May 2019. Articles containing information on amyotrophic lateral sclerosis <i>and</i> cognition <i>and</i> swallowing were reviewed. A secondary search was conducted in July 2020 with broadened search terms. <i>Result</i>: The primary search identified 1055 articles, and 47 were included for full-text review. Of these, no articles directly met the inclusion criteria of both cognitive impairment and swallowing. The secondary search with broadened terms identified an additional 762 studies, and 9 were included for full-text review, but none met the inclusion criteria. Consequently, thematic analysis was completed on articles from the full-text review to identify themes that related to both cognition and swallowing. The themes identified were: (i) early specialised multidisciplinary management of ALS achieves better outcomes; (ii) cognitive impairment impacts on management; and (iii) impaired swallowing occurs in nearly all people living with ALS and is a serious symptom of the disease. <i>Conclusion</i>: The interaction between cognitive impairment and oropharyngeal swallowing function in ALS has not been investigated. This is important, as cognitive impairment impacts insight and decision-making and may have implications for oropharyngeal swallowing management.
DOI: 10.6084/m9.figshare.14333366.v1
title: The impact of cognitive decline in amyotrophic lateral sclerosis on swallowing. A scoping review

description: <i>Purpose</i>: Impaired swallowing is a serious symptom of amyotrophic lateral sclerosis (ALS) impacting on health and wellbeing. Little is known about how cognitive impairment in amyotrophic lateral sclerosis impacts on oropharyngeal swallowing. A scoping review was undertaken to explore how cognitive impairment impacts on a person living with ALS’s (plwALS) ability to understand and manage oropharyngeal swallowing function. <i>Method</i>: Subject headings and keywords were searched across MEDLINE, SCOPUS, CINAHL, PsychINFO, Emcare and Google Scholar in May 2019. Articles containing information on amyotrophic lateral sclerosis <i>and</i> cognition <i>and</i> swallowing were reviewed. A secondary search was conducted in July 2020 with broadened search terms. <i>Result</i>: The primary search identified 1055 articles, and 47 were included for full-text review. Of these, no articles directly met the inclusion criteria of both cognitive impairment and swallowing. The secondary search with broadened terms identified an additional 762 studies, and 9 were included for full-text review, but none met the inclusion criteria. Consequently, thematic analysis was completed on articles from the full-text review to identify themes that related to both cognition and swallowing. The themes identified were: (i) early specialised multidisciplinary management of ALS achieves better outcomes; (ii) cognitive impairment impacts on management; and (iii) impaired swallowing occurs in nearly all people living with ALS and is a serious symptom of the disease. <i>Conclusion</i>: The interaction between cognitive impairment and oropharyngeal swallowing function in ALS has not been investigated. This is important, as cognitive impairment impacts insight and decision-making and may have implications for oropharyngeal swallowing management.
DOI: 10.5281/zenodo.3395473
title: Data repository of the paper "The First Terrestrial Electron Beam Observed by The Atmosphere-Space Interactions Monitor" by D. Sarria et al.

description: Data repository / Supporting information of the paper "The First Terrestrial Electron Beam Observed by The Atmosphere-Space Interactions Monitor" (2019) by D. Sarria et al. Access to the article: https://doi.org/10.1029/2019JA027071