cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21334260.v1
title: Supplementary Material for: CA19-9 in Combination with Methylated HOXA1 and SST Is Useful to Diagnose Stage I Pancreatic Cancer

description: Introduction: We previously developed a novel methylation assay, the combined restriction digital PCR (CORD) assay, consisting of treatment of DNA with methylation-sensitive restriction enzymes and droplet digital PCR. Methods: In this study, we assessed the diagnostic performance of serum methylated Homeobox A1 (mHOXA1) and methylated somatostatin (mSST) using the CORD assay in combination with CA19-9 for pancreatic cancer using serum samples from 82 healthy individuals, 13 patients with benign pancreatic disease, 3 patients with branched-duct intraductal papillary mucinous neoplasm, and 91 patients with pancreatic cancer. Results: For the single marker tests, sensitivity for all stages of pancreatic cancer, stage I cancer, and specificity were, respectively, 71.4%, 50.0%, and 94.9% for CA19-9; 51.6%, 68.8%, and 90.8% for mHOXA1; and 50.1%, 68.8%, and 94.9% for mSST. Those for the combined marker tests were, respectively, 86.8%, 81.3%, and 85.7% for combined mHOXA1 and CA19-9; 86.8%, 87.5%, and 89.8% for combined mSST and CA19-9; and 89.0%, 87.5%, and 85.7% for all three markers combined. Conclusion: The combination of mHOXA1 and mSST with CA19-9 appears to be useful to detect pancreatic cancer even at an early stage.
DOI: 10.6084/m9.figshare.27434550.v1
title: LeicaDMi1.zip

description: SLiMIA (Spheroid Light Microscope Image Atlas) provides light microscopy images (and manual segmentations/ground truths) of spheroids from 50 cell lines, 9 culture media, 4 formation methods and multiple seeding densities.This folder contains specifically the images obtained with a Leica DMi light microscope.
DOI: 10.6084/m9.figshare.29061500.v1
title: araon_ismr.zip

description: Ionospheric scintillation indices data by shipborne experiment (Korean icebreaker, Araon) in 2021.
DOI: 10.17632/cn65mjcjcg
title: Dataset on nitrogen and phosphorus excretion in mountain dairy farms

description: In a mountain area (6200 Km2), data concerning 564 dairy farms (herd size and land use), animals (milk production and quality, and reproductive events), and diets (formulation and ingredient composition) were gathered from institutional databases or collected on farm, and merged. The farms were clustered in four farming systems: traditional with transhumance in alpine summer pastures (T-ALP), traditional without transhumance (T-noALP), traditional with use of silage (T-S), and modern (MOD). Based on the available inputs a model to estimate the nitrogen and phosphorus excretions per cow, per unit of milk produced and per hectare of utilized agricultural land was developed. The model was used for a regional study in Schiavon et al. (2019): Nitrogen and phosphorus excretion on mountain farms of different dairy systems. https://doi.org/10.1016/j.agsy.2018.10.006
DOI: 10.6084/m9.figshare.1404147.v2
title: Table1

description: Table1
DOI: 10.6084/m9.figshare.15172551.v1
title: Countries arranged by Number of Universities in Top Ranks of the Ranking Web July 2021

description: 214 countries arranged by the distribution of 31097 universities in the top ranks of the July 2021 edition of the Ranking Web (Webometrics) of Universities<br>
DOI: 10.6084/m9.figshare.21656099.v1
title: Widespread triazole pesticide use affects infection dynamics of a global amphibian pathogen

description: The files include all three scripts and databases used in the statistical analysis perofrmed in the manuscript titled "Widespread triazole pesticide use affects infection dynamics of a global amphibian pathogen" <br> Ponds epoxiconazole dataset contains the site name, sampling period, numer of infected animals, number of not infected animals, epoxiconazole concentration, and epoxiconazole concentration log_transformed. <br> The R script with the same name contains the code with which the analysis described in the manuscript relative to the fieldwork were run. <br> Tadpoles epoxiconazole database includes the sample name, the sample group, infection status, body length (BL) of the animal sampled, Infection load (GE_load) of the sample, body lenght*1000 (BL1000), and infection load log_transformed (GE_load_trans). The dataset is relative to an infection and exposure trial where tadpoles were exposed to the triqzole fungicide epoxiconazole and infected with <em>Batrachochytrium dendrobatidis. </em>The experiment is described in depth in the manuscript. <br> The R script with the same name contains the code with which the analysis included in the manuscript were run. <br> Tadpoles epoxiconazole 2 databse includes the treatment and the infection status of the sampled animal.They refer to the same experiment described above for the database "tadpoles_epoxiconazole_db" <br> The R script with the same name contains the code with which the analysis included in the manuscript were run. <br> <br>
DOI: 10.6084/m9.figshare.25908637.v1
title: Dataset_Conflict Study.xlsx

description: This dataset contains the raw data of the study 'Perceived Competences, Attitudes, and Training Needs in Conflict Management Among a Cohort of Italian Physiotherapists: A Cross-Sectional Survey Study' where we found that Italian Physiotherapists (n=203; mean age: 39±10.40) generally leaned towards a constructive communication style, characterised by compromise and collaboration, viewing conflict management as an opportunity to grow. There was a disparity between their exhibited behaviours and self-assessment of appropriateness in conflict resolution. Only 27.6% considered their conflict resolution skills as satisfactory. However, 85.7% acknowledged the significance of being trained in conflict management. Challenges were evident in conflicts within interprofessional relationships and communication with superiors. Both personal and organisational factors were identified as influencing conflict management, with participants recognising the detrimental impact of conflicts on their well-being and patient care.
DOI: 10.6084/m9.figshare.28284980.v1
title: Particle images

description: This folder contains the complete collection of particle images as of February 2025. Each particle image is associated with 33 particle features that can be found in the "Particle_features.xlsx" file. The filename of the particle image corresponds to the index of the spreadsheet row of the associated particle features. Note that the final term of the filename (e.g., JJtrlcf) corresponds to the label. The label contains the particle main type in its first letter: J for juvenile, L for Lithic, A for Altered material, or the name of specific minerals like PG (plagioclase) or PX (pyroxene) for free crystals.
DOI: 10.6084/m9.figshare.28806161.v1
title: The surface seawater and lower atmosphere DMS data collected in 34th Chinese Antarctic Research Expedition (2018)

description: Our measurements were performed on board the R/V Xue Long from February 23 – March 31, 2018 during 34th Chinese Antarctic Research Expedition. The ship tracks only showed the region south of 40°S: leg 1 extended from the sea near New Zealand to Amundsen Sea from 2018 February 23 to March 4; leg 2 extended from Amundsen Sea to the sea near New Zealand from 2018 March 5 to March 31. The dataset contains surface seawater and lower atmospheric DMS, Chlorophyll, DMS flux and meteorological parameters.
DOI: 10.6084/m9.figshare.5844789.v1
title: NaPiRE Data Set 2013

description: Data from the NaPiRE run 2012 in Germany, codebook and instrument printout. Further information can be taken from the website www.re-survey.org
DOI: 10.17632/gw3fbp74ct
title: NPK Survey of Field Crops 2014-2017

description: Data set is a survey of nitrogen (N), phosphorous (P), and potassium (K) percentages in grains of corn, soybean, and wheat samples collected around the state of Illinois from 2014 to 2017. The survey was funded by the Illinois Nutrient Research and Education Council (NREC) Award# 2014-02377 to improve the accuracy of P and K removal values for corn, soybean, and wheat. We solicited grain samples from producers each fall using online bulletins and through appropriate producers associations and radio. Additional information included field location (Illinois county) and yield level (bushels per acre) of the field from which samples were taken. Due to the lack of measured association between crop yields and nutrient extraction levels, we removed the requirement of yield reporting for sample submission starting on the second year to improve participation. Samples were sent to a commercial laboratory (Brookside laboratories, Inc., New Bremen, OH) for the determination of N, P, and K in grain samples, reported as percentages.
DOI: 10.17632/mpkdmfdb8m
title: Raster dataset on the area, volume and population of structures in Denmark at ten by ten-meter resolution January 2021.

description: Structural characteristics in a 10 by 10 meter resolution over Denmark. Data collected in January 2021.

Contains three rasters over Denmark. 
    - Area of human-made structures
    - Volume of human-made structures
    - Number of inhabitants pixel pixel inside human-made structures

The data was gathered publicly available data. The source data is:
    - GeoDenmark Building Footprints
    - DAGI Danish Administrative boundaries
    - Danish Population Statistics at parish level
    - Danish National Terrain models, surface and terrain
    - National Address API for address access points

The data does not cover the Island of Bornholm.
DOI: 10.6084/m9.figshare.11438502.v1
title: Datasets and software

description: <b>Paper title: </b>Understanding the modifiable areal unit problem in dockless bike-sharing usage and exploring the interactive effects of built environment factors<b>Journal:</b> <i>International Journal of Geographical Information Science</i><b>Abstract:</b>Understanding the influence mechanisms of dockless bike sharing usage is essential for land use planning and bike scheduling strategy implementation. Although various studies have been carried out to explore the impact of built environment (BE) factors on bike sharing usage, few studies have examined the modifiable areal unit problem (MAUP). Moreover, previous studies mainly focused on the separate effect of each factor but neglected the interactions between these factors. Taking Shenzhen, China as the case, this study fills these two gaps by employing the geographical detector method to examine the MAUP in dockless bike-sharing usage as well as the interactive effects of BE factors. The results revealed that the influences of most BE variables are sensitive to the spatial areal units, which have informed urban planners what built environment factors should be paid more attention to at certain spatial scales. Additionally, through the comparisons between single effect and interactive effect, this study revealed some interesting findings that can provide scientific basis for temporal rebalance strategy for the innovative and high-density metropolis in China.<b>Acknowledgments:</b>This study was supported by Guangzhou Science and technology project (Grant No. 201904010198), the National Natural Science Foundation of China (Grant No. 41871290, 41401432), Key Special Project for Introduced Talents Team of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)(GML2019ZD0301).
DOI: 10.6084/m9.figshare.16862299.v1
title: MATLAB figures and data for the article "Columnar processing of border ownership in primate visual cortex"

description: MATLAB figures and data for the article "Columnar processing of border ownership in primate visual cortex"
DOI: 10.6084/m9.figshare.6825338.v3
title: ROI depth images

description: Raw data utilized in the study "Investigating the impact of a motion capture system on Microsoft Kinect v2 recordings: a caution for using the technologies together"<br>QK file are presenting the depth recordings in presence of Qulisys motion capture system.K are presenting the depth recordings in absence of Qulisys motion capture system.
DOI: 10.6084/m9.figshare.8309714.v2
title: ECCITE-seq protein and mRNA counts

description: Protein data were acquired from https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM3596101, file GSM3596101_CTCL-ADT-count.csv.gz.<br><code>velocyto</code> processing: velocyto run (bam directory)/(BAM file).bam (transcriptome directory)/genes/genes.gtf<br><br>
DOI: 10.6084/m9.figshare.25908706.v1
title: Proteomic data of ATCC15947without or with NAC

description: Proteomic data of ATCC15947 without or with N-acetylcysteine
DOI: 10.6084/m9.figshare.26302075.v1
title: <b>Simultaneous and </b><b><i>in situ</i></b><b> syntheses of an enantiomeric pair of homochiral polymers as their perfect stereocomplex in </b><b>a </b><b>crystal</b>

description: Kz_326_poly_bg_subtracted_PXRD and Kz_326_mono_bg_subtracted_PXRD - These data refer to the PXRD image shown as fig. 4d in the main manuscript.kz_326_mono_DSC and kz-326_poly_DSC - These data refer to the DSC image shown as fig. 4c in the main manuscript.kz_mono_326_IR and kz_poly_326_IR_Baselinecrc - These data refer to the IR image shown as fig. 4b in the main manuscript.
DOI: 10.6084/m9.figshare.5606029.v1
title: Performance Enhancement of a Brain-Computer Interface using High-Density Multi-Distance NIRS

description: This study investigated the effectiveness of using high-density multi-distance source-detector (SD) separations in near-infrared spectroscopy (NIRS) for enhancing the performance of functional NIRS (fNIRS)-based brain-computer interface (BCI). The NIRS system that was used for the experiment is capable of measuring signals from four SD separations: 15, 21.2, 30 and 33.5 mm; this allowed the measurement of hemodynamic response alterations at various depths. Fifteen participants were asked to perform mental arithmetic and word chain tasks to induce task-related hemodynamic response variations or asked to stay relaxed to acquire a baseline signal. To evaluate the degree of BCI performance enhancement by the high-density channel configuration, the classification accuracy obtained using the typical low-density lattice SD arrangement was compared with that obtained using the high-density SD arrangement, while maintaining the SD separation at 30 mm. The analysis results demonstrated that the use of high-density channel configuration did not result in noticeable enhancement of classification accuracy; however, combining hemodynamic variations measured by two multi-distance SD separations resulted in significant enhancement of the overall classification accuracy. The results of this study indicate that the use of high-density multi-distance SD separations is likely to provide a new method of enhancing the performance of an fNIRS-BCI.
DOI: 10.17632/pnd47bmjh5
title: ABG RAW DATA

description: Validation of the OMNI S b221 Blood Gas Analyser method for point-of-care testing at the largest Academic Hospital in the Southern Hemisphere Ernest Philani Buthelezi1*, Edwin Rampota2, Matumi Mphogo2, Florence Marule2 and Donald M Tanyanyiwa3,4 1. Department of Health, Laboratory and Blood Services, Johannesburg, South Africa. 2. Department of Chemical Pathology National Health Laboratory Service, Johannesburg, South Africa. 3. Department of Chemical Pathology, University of the Witwatersrand, Johannesburg, South Africa. 4. Department of Chemical Pathology, Sefako Magkatho Health Sciences University, Pretoria, South Africa. *Correspondence: Ernest Philani Buthelezi1, Department of Health, Laboratory and Blood Services, Johannesburg, South Africa. Telephone: +27 11 694 3714; Mobile phone: +27 82 558 9498. Email: Philani.Buthelezi@gauteng.gov.za Abstract Introduction: The introduction of a new method or new analyser is a common occurrence in laboratory practice. Since Astrup developed the first analyser in the 1950s, blood gas analysers have evolved from the measurement of basic pH, partial pressures of oxygen (pO2) and carbon dioxide (pCO2) to the measurement of various forms of haemoglobin, serum electrolytes, and other metabolites. These analysers offer the best form of point-of-care testing (POCT). When a new POCT analyser is obtained, the performance of the analyser should be evaluated by comparison to the central laboratory or outgoing analysers in cases of replacements. Objectives: Evaluation of method performance of pH, pCO2, pO2, glucose, lactate and electrolytes on Roche Cobas OMNI S b221 (Arterial blood gas) ABG analyser. Materials and Methods: To analyse the method performance of the pH, pO2, pCO2, glucose, lactate and electrolytes (Na+, K+ Ca++) on Cobas b221 arterial blood gas (ABG) analyser by comparing 40 samples run on Cobas b221 with the results obtained from Radiometer ABL700, GEM PREMIER for all the parameters and the Roche Hitachi 917 analyser to compare two electrolytes (Na+ and K+). The correlation coefficient was calculated for the results obtained from each paired set of instruments (ABL 700 vs GEM PREMIER and ABL 700 vs OMNI S b221). Comparability between analyser methods performance was determined using Scatter plots. Results: The correlation coefficient between the paired analytical platforms were all between 0.81 and 0.99, demonstrating a good correlation. The coefficient of variation (CV) for all the parameters were less than 2 also demonstrating good precision. Conclusion: ABG b221 analyser correlated well with the outgoing ABG ABL 700 analyser, GEM PREMIER ABG and the central laboratory analyser, Roche Hitachi 917 and therefore, verified as a good platform to run arterial blood gas samples.
DOI: 10.6084/m9.figshare.22575040.v1
title: code-snippets.csv

description: Source code snippets dataset <br> Subset of dataset at https://github.com/Kamel773/SourceCodeClassification
DOI: 10.6084/m9.figshare.29043041.v1
title: Fine scale and long-term heat budget model data - The importance of fine-scale refugia and behavioural thermoregulation in the resilience of intertidal limpet populations

description: Output of heat budget model for limpets at multiple sites on the north east coast of New Zealand's South Island. Limpet body temperatures were predicted using meterological data combined with high-resolution digital surface models to look at the effect of fine-scale topographic variability on body temperatures and mortality.
DOI: 10.17632/5wctgnrfdf
title: Establishing a Process-Structure-Property-Performance Framework for SLS Additive Manufacturing Through Integrated Multiscale Modeling

description: The input files for laser interaction with PA12 powder in SLS process in MOOSE software package and the setup for Abaqus and Z-mat software packages used for the Representative Volume Element (RVE) and mechanical analyses.
DOI: 10.17632/8yp4xb6d3s
title: Neuronal cultures on PDMS topographical patterns: experiments and simulations

description: This dataset contains experimental recordings on neuronal cultures grown on PDMS topographical cultures as well as the corresponding numerical simulations. Data is in the form of raster plots and includes a representative full analysis for the extraction of important properties such as activity and effective connectivity.  See READ_FIRST.txt on the Experimental or Numerical folders for details on data format.
DOI: 10.6084/m9.figshare.1108081.v1
title: DARIUS Database

description: This database was established during my PhD dissertation project (2011-2014 ; University Paris 1 Panthéon-Sorbonne, UMR Géographie-Cités, ERC GeoDiverCity) It gives (mainly) demographic informations on morphological agglomerations in the Former Soviet Union space from 1840 to 2010
DOI: 10.6084/m9.figshare.25569933.v1
title: TAO/TRITON ADCP and Current Velocity Data

description: These NetCDF files contain ADCP and ocean current velocity measurements from the TAO/TRITON array, averaged over different time periods indicated by the filename. The data, and much more, can be found here. This data is provided for reproducibility purposes, as it was used in:Halpern, D., Le, M. K., Smith, T. A., & Heimbach, P. (2023). Comparison of ADCP and ECCOv4r4 Currents in the Pacific Equatorial Undercurrent. <i>Journal of Atmospheric and Oceanic Technology</i>, 40(12), 1369-1381. https://doi.org/10.1175/JTECH-D-23-0013.1<b>Users of this dataset should follow </b><b>these acknowledgement guidelines</b><b>, copied here:</b><i>If you use these data in publications, please acknowledge the GTMBA Project Office of NOAA/PMEL. Also, we would appreciate receiving a preprint and/or reprint of publications utilizing the data for inclusion in the GTMBA bibliography. Relevant publications should be sent to:</i><br><br><i>GTMBA Project Office</i><br><i>NOAA/Pacific Marine Environmental Laboratory</i><br><i>7600 Sand Point Way NE</i><br><i>Seattle, WA 98115</i>
DOI: 10.6084/m9.figshare.25658496.v1
title: Datasets (SplitVAE)

description: This dataset contains our research data.
DOI: 10.6084/m9.figshare.5976610.v1
title: Representative Ca2+ imaging in HeLa cells transfected with inverse-pericam and IP2.0.

description: This is the data of representative Ca2+ imaging in HeLa cells transfected with inverse-pericam and IP2.0, which was used in the study Hara-Kuge et al. (2018).
DOI: 10.17632/273rk8skcg
title: Black Carbon characteristics over the Arctic

description: Black Carbon and Biomass burning data: https://npdc.ncaor.gov.in/npdc/homepage.action
DOI: 10.17632/9vks4xfn9x
title: Neuroeconomics Research Dataset (1991-2020)

description: The neuroeconomics research and publication dataset, which was indexed by Scopus from 1991 to 2020. The daraset contains data authors, authors ID Scopus, tittle, year, source tittle, volume, issue, article number in Scopus, DOI, link, affiliation, abstract, index keywords, references, Corrspondence Addressm editors, publisher, conference name, conference date, conference code, ISSN, language, document type, access type, and EID.
DOI: 10.17632/d9t8mbp6k7
title: Association between Atopic Dermatitis, Cancer and All-Cause Mortality: A Population-Based Study

description: 1.Supplementary Figure S1: Flowchart of study.
2. Supplementary Table S1: The association of AD and the risk of cancer.
3. Supplementary Table S2: Association between AD and risk of cancer in different subgroups.
4. Supplementary Table S3: Association between AD and cancer and all-cause mortality.
DOI: 10.17632/w5nydtrbvz
title: Data for: Ecological effects and effectiveness of silvicultural restoration treatments in whitebark pine forests

description: Data and associated R code scripts to perform the intervention detection method we used to detect growth releases and suppressions in whitebark pine trees in silvicultural restoration treatments. The intervention detection source code is provided here to allow use or modification of this method by other researchers. The method is designed to work with tree ring time series data. To run our analysis, place all files provided here into a single folder and run the "Intervention detection core execution code.r" script in the R environment.
DOI: 10.6084/m9.figshare.14877132.v1
title: NGS-2020-10-02584-T_S2.csv

description: Data S2 from the manuscript "Global chemical weathering dominated by continental arcs since the mid-Paleozoic"<br>Gernon et al. 2021. Nature Geoscience.<br><br>Filename: NGS-2020-10-02584-T_S2.csv <br><br>Summary of the simulated time series (capturing uncertainty) for all input parameters, including the mean, median, 10th and 90th percentiles, and minimum and maximum values at 0.5 Ma time steps (see Methods in manuscript for details). <br>
DOI: 10.6084/m9.figshare.22730066.v1
title: Raw and processed data for vegetable production in reducing child stunting

description: Raw and processed data for the manuscript "Contribution of Home Garden Vegetables on Reducing Stunting Among 6-23 Months old Age Children in South Tigray, Northern Ethiopia.