cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15320923
title: NLST-3D+ Annotation

description: With the National Lung Screening Trial (NLST), for detection evaluation, we utilized open-access annotations provided by [Mikhael et al.(2023)]. We converted over 9,000 2D slice-level bounding box annotations from more than 900 lung cancer patients into 3D representations, resulting in over 1,100 nodule annotations.

To extract 3D annotations from the 2D annotations, we first verified the 2D annotations within the DICOM images. Then, we extracted the `seriesinstanceuid`, `slice_location`, and `slice_number` from the DICOM headers. Subsequently, the image coordinate locations were converted to world coordinates. After verifying these annotations in the corresponding NIFTI images, we concatenated overlapping consecutive 2D annotations of the same lesion across multiple slices into a single 3D annotation. 

The complete code for generating the 3D annotations, along with a visualization script to display these annotations, will be released soon. A preview of the visualization is shown in this Jupyter Notebook: https://github.com/fitushar/AI-in-Lung-Health-Benchmarking-Detection-and-Diagnostic-Models-Across-Multiple-CT-Scan-Datasets/blob/main/NLST_Data_Annotations/3D_Annotation_Visualizations_NLST.ipynb

Code Repository:To support reproducible open-access research and benchmarking, we have shared several pre-trained models and baseline results in a GitHub and GitLab repository.

GitLab: https://gitlab.oit.duke.edu/cvit-public/ai_lung_health_benchmarkingGitHub: https://github.com/fitushar/AI-in-Lung-Health-Benchmarking-Detection-and-Diagnostic-Models-Across-Multiple-CT-Scan-Datasets
DOI: 10.15468/dl.cbxg57
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phedimus spurius",
 "Country is Latvia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093280-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q3m8hp
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Neofelis diardi"
 ]
}

 The dataset includes 88 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093282-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ptesg
title: Occurrence Download

description: A dataset containing 4896 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phedimus spurius",
 "Country is Norway",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4896 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093283-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ezpven
title: Occurrence Download

description: A dataset containing 154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epilobium brunnescens",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 154 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093281-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kjpvgj
title: Occurrence Download

description: A dataset containing 709 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melipona scutellaris"
 ]
}

 The dataset includes 709 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093284-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.92my32
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Elvira cupreiceps)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 37 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093285-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgvf6y
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pseudotropheus crabro)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093286-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kah5vz
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Populus alba",
 "Country is Uruguay",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093287-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.askfjy
title: Occurrence Download

description: A dataset containing 212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Drymaria cordata",
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 212 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093289-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x2cc62
title: Occurrence Download

description: A dataset containing 10286 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phedimus spurius",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10286 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093288-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ev8hv6
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crataegus laevigata",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 71 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093290-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12653386
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.u2ma45
title: Occurrence Download

description: A dataset containing 20163 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Emarginata schlegelii)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 20163 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093291-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mpmemh
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Drymaria cordata",
 "Country is Comoros",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093292-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.muga54
title: Occurrence Download

description: A dataset containing 56547 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aves)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-78.4361474444293 -6.43721519847723,-77.473004923421 -6.43721519847723,-77.473004923421 -5.90093450028893,-78.4361474444293 -5.90093450028893,-78.4361474444293 -6.43721519847723))"
 ]
}

 The dataset includes 56547 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093258-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12653524
title: Daftar Pengadilan Indonesia
DOI: 10.15468/dl.erujyx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gastromyzon scitulus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093293-250717081556266/datasets/export for details.
DOI: 10.15468/dl.gu3jp6
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucalyptus globulus",
 "Country is Uruguay",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093294-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ne8fpu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucalyptus globulus",
 "Country is Zimbabwe",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093295-250717081556266/datasets/export for details.
DOI: 10.15468/dl.htq4n5
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Drymaria cordata",
 "Country is Congo, Democratic Republic of the",
 "HasCoordinate is true"
 ]
}

 The dataset includes 69 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093297-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15576904
title: Data and Code for Species characteristics modulate tropical mammal responses to forest quality in Southeast Asia
DOI: 10.5281/zenodo.15576905
title: Data and Code for Species characteristics modulate tropical mammal responses to forest quality in Southeast Asia
DOI: 10.15468/dl.hqckxr
title: Occurrence Download

description: A dataset containing 176781 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Elseyornis melanops)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 176781 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093267-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w9deuv
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Drymaria cordata",
 "Country is Côte d’Ivoire",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093296-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sasv34
title: Occurrence Download

description: A dataset containing 1680 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prunus laurocerasus",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1680 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093298-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ufgeww
title: Occurrence Download

description: A dataset containing 9948 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prunus laurocerasus",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9948 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093299-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14861225
title: FARZAD
DOI: 10.5281/zenodo.16729364
title: FARZAD
DOI: 10.15468/dl.2pmdzb
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myriophyllum heterophyllum",
 "Country is Germany",
 "HasCoordinate is true"
 ]
}

 The dataset includes 87 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093300-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.358fpu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Anablepsoides xanthonotus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093303-250717081556266/datasets/export for details.
DOI: 10.15468/dl.9nyf5q
title: Occurrence Download

description: A dataset containing 12069 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Emarginata sinuata)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 12069 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093301-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v8vv45
title: Occurrence Download

description: A dataset containing 32712 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aves)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-75.0262548254906 -11.579781229253,-74.6959093133261 -11.579781229253,-74.6959093133261 -11.2233867570948,-75.0262548254906 -11.2233867570948,-75.0262548254906 -11.579781229253))"
 ]
}

 The dataset includes 32712 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093302-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvt5w5
title: Occurrence Download

description: A dataset containing 1042 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Emberiza affinis)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 1042 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093305-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5zgrsa
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Avena sterilis",
 "Country is Uzbekistan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093304-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k9ruy7
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rubus spectabilis",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 122 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093308-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.34p9wu
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Drymaria cordata",
 "Country is El Salvador",
 "HasCoordinate is true"
 ]
}

 The dataset includes 39 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093306-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u44wx6
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Drymaria cordata",
 "Country is Gabon",
 "HasCoordinate is true"
 ]
}

 The dataset includes 31 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093307-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.654x9n
title: Occurrence Download

description: A dataset containing 2062 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Emberiza cabanisi)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 2062 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093309-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j5kz35
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Drymaria cordata",
 "Country is Guatemala",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093310-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.usye5t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Potamotrygon boesemani)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093311-250717081556266/datasets/export for details.
DOI: 10.15468/dl.zxxub9
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centaurea benedicta",
 "Country is Uzbekistan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093314-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.28djcd
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myriophyllum heterophyllum",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093315-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffjn4v
title: Occurrence Download

description: A dataset containing 18790 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aves)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-80.5341107403063 -3.58159013240225,-80.2209003631159 -3.58159013240225,-80.2209003631159 -3.38940893552238,-80.5341107403063 -3.38940893552238,-80.5341107403063 -3.58159013240225))"
 ]
}

 The dataset includes 18790 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093312-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gftnd9
title: Occurrence Download

description: A dataset containing 6422 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Emarginata tractrac)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 6422 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093318-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qnxxfv
title: Occurrence Download

description: A dataset containing 278 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Picea sitchensis",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 278 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093316-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.