cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.9b37gv4/1
title: Behavioural bioassays on captive ring-tailed lemurs (Lemur catta)

description: Results of behavioural bioassays conducted in October 2016 at the Duke Lemur Center in Durham, North Carolina. All animals were captive born adults, housed socially in single or mixed-sex social groups. All bioassays were videotaped and animal behaviour recorded using a published ethogram (see manuscript Supplementary Material). Each bioassay is represented by two data lines (one for each dowel used in each trial).
DOI: 10.5061/dryad.9b37gv4/2
title: GC-MS odorant data

description: Odorant chemical data for 99 scent secretion samples collected from adult, captive-born ring-tailed lemurs housed at the Duke Lemur Center in Durham, North Carolina, USA. Odorant data derived from GC-MS analyses of scent secretions on cotton swabs, all samples collected between 2007-2016. Datafile includes 12 metadata columns and 318 dependent variable columns (retention times of individual chemical compound peaks given in the column headings).
DOI: 10.5061/dryad.9v8f5v5/2
title: Reduced set of SNPs (Antilophia_1736_SNPs.vcf)
DOI: 10.5061/dryad.9v8f5v5/8
title: Raw Illumina files
DOI: 10.5061/dryad.ct65669/24
title: TOG-HUHC-Vamps-Leray5_S5_L001_R2_001.fastq
DOI: 10.5061/dryad.ct65669/25
title: TOG-HUHC-Vamps-Leray6_S6_L001_R1_001.fastq
DOI: 10.5061/dryad.ct65669/26
title: TOG-HUHC-Vamps-Leray6_S6_L001_R2_001.fastq
DOI: 10.5061/dryad.ct65669/27
title: TOG-HUHC-Vamps-Leray7_S7_L001_R1_001.fastq
DOI: 10.5061/dryad.ct65669/28
title: TOG-HUHC-Vamps-Leray7_S7_L001_R2_001.fastq
DOI: 10.5061/dryad.ct65669/29
title: TOG-HUHC-Vamps-Leray8_S8_L001_R1_001.fastq
DOI: 10.5061/dryad.ct65669/30
title: TOG-HUHC-Vamps-Leray8_S8_L001_R2_001.fastq
DOI: 10.5061/dryad.ct65669/31
title: TOG-HUHC-Vamps-Leray9_S9_L001_R1_001.fastq
DOI: 10.5061/dryad.ct65669/33
title: Vamps-16s-1_S5_L001_R1_001.fastq
DOI: 10.5061/dryad.g18b090/54
title: I-R rats

description: I-R rats - hdcv data files
DOI: 10.5061/dryad.g18b090/55
title: A2A rats

description: A2A-stroke rats - hdcv data files
DOI: 10.5061/dryad.h6j0g4p/1
title: Cybertype_P.bruehlheidei_CASENT0790023

description: Cybertype dataset for Proceratium bruehlheidei (CASENT0790023) holotype worker: complete micro-CT scanning raw dataset (DICOM format - 993 slices), 3D surface (ply format), 3D rotation video (mp4 format), 3D model volume rendering snapshots (tiff format), and montage photos (tiff format)
DOI: 10.5061/dryad.h6j0g4p/2
title: Virtual dataset_P.itoi_OKENT0016142

description: Cybertype dataset for Proceratium itoi (OKENT0016142) nontype worker: complete micro-CT scanning raw dataset (DICOM format - 993 slices), 3D surface (ply format), 3D rotation video (mp4 format), 3D model volume rendering snapshots (tiff format), and montage photos (tiff format)
DOI: 10.5061/dryad.h6j0g4p/3
title: Virtual dataset_P.japonicum_CASENT0790834

description: Virtual dataset for Proceratium japonicum (CASENT0790834) nontype worker: complete micro-CT scanning raw dataset (DICOM format - 993 slices), 3D surface (ply format), 3D rotation video (mp4 format), 3D model volume rendering snapshots (tiff format), and montage photos (tiff format)
DOI: 10.5061/dryad.h6j0g4p/4
title: Cybertype_P.kepingmai_CASENT0790031

description: Cybertype dataset for Proceratium kepingmai (CASENT0790031) holotype worker: complete micro-CT scanning raw dataset (DICOM format - 993 slices), 3D surface (ply format), 3D rotation video (mp4 format), 3D model volume rendering snapshots (tiff format), and montage photos (tiff format)
DOI: 10.5061/dryad.h6j0g4p/5
title: Virtual dataset_P.longigaster_CASENT0790673

description: Virtual dataset for Proceratium longigaster (CASENT0790673) nontype worker: complete micro-CT scanning raw dataset (DICOM format - 993 slices), 3D surface (ply format), 3D rotation video (mp4 format), 3D model volume rendering snapshots (tiff format), and montage photos (tiff format)
DOI: 10.5061/dryad.h6j0g4p/6
title: Cybertype_P.shohei_CASENT0717686

description: Cybertype dataset for Proceratium shohei (CASENT0717686) holotype worker: complete micro-CT scanning raw dataset (DICOM format - 993 slices), 3D surface (ply format), 3D rotation video (mp4 format), 3D model volume rendering snapshots (tiff format), and montage photos (tiff format)
DOI: 10.5061/dryad.k5d0rp0/1
title: OECD drowning mortality

description: Drowning mortality rates by intent among OCED countries
DOI: 10.5061/dryad.n8m9c.2
title: Data from: Distinguishing between convergent evolution and violation of the molecular clock for three taxa
DOI: 10.5061/dryad.n8m9c.2/1.2
title: Python Script for Comparing Non-Clock-Like Triplets to Convergence-Divergence Models

description: The attached text file is intended to run in Python. Edge parameters are simulated from a 3-taxon non-clock-like tree and tested to see whether they are consistent with a 3-taxon convergence-divergence model. Similarly, epoch parameters are simulated from a 3-taxon convergence-divergence model and tested to see whether they are consistent with a 3-taxon non-clock-like tree.
DOI: 10.5061/dryad.nh6hn04/10
title: Robot_Boat_Hippo_Pool_Stratification_Moliband

description: This file contains the conductivity measurements taken at different depths for the Moliband Pool. See the Methods and Supplementary Information in the manuscript for more details about the location of the pool.
DOI: 10.5061/dryad.nh6hn04/14
title: Sediment_Fingeprinting_Dec10-2013_Samples

description: This file contains the raw elemental data for the time series of samples collected at the Purungat bridge beginning on December 10, 2013. All elemental data is provided in ppm (parts per million).
DOI: 10.5061/dryad.nh6hn04/3
title: Raw_Discharge_and_DO_Data_Dec2012-March2015

description: This file contains the raw dissolved oxygen and discharge data collected from the sonde at the Purungat Bridge between December 2012 and March 2015. The sonde initially recorded depth data with a pressure transducer. We also recorded changes in barometric pressure and then corrected the sonde depth values with the barometric pressure data then applied our rating curve to calculate discharge in m3/s (see Methods). Dissolved oxygen is provided in percent saturation and mg/L. Measurements were taken every 15 minutes. Please note, this is the raw data. Below a value of approximately 4 to 5 m3/s, you will notice dissolved oxygen starts to gradually drop over the course of several days. This is due to the location that our sonde is installed in the river. It becomes disconnected from the main channel as discharge falls somewhere between 4 to 5 m3/s and dissolved oxygen is more represented as a partially connected pool and not the main river channel.
DOI: 10.5061/dryad.nh6hn04/4
title: Experimental_Streams_Hippo_Feces_Addition

description: This file contains the data for plotting Fig 2b. This is data from an experiment where different concentrations of hippo feces were added to recirculating experimental streams and dissolved oxygen was logged in each stream every 5 minutes. This data has been cleaned up and error checked from the original raw data. Four columns: Minutes (Time since beginning of the experiment), variable (the specific treatment channel), value (dissolved oxygen in mg/L), and type (Hippo Feces).
DOI: 10.5061/dryad.nh6hn04/5
title: Experimental_Streams_HPW_Addition

description: This file contains the data for plotting Fig 2c. This is data from an experiment where different concentrations of hipppo pool water (HPW) were added to recirculating experimental streams and dissolved oxygen was logged in each stream every 5 minutes. This data has been cleaned up and error checked from the original raw data. Four columns: Minutes (time since beginning of the experiment), variable (the specific treatment channel), value (dissolved oxygen in mg/L), and type (HPW).
DOI: 10.5061/dryad.nh6hn04/6
title: Robot_Boat_Hippo_Pool_Stratification_AmaniMara

description: This file contains the conductivity measurements taken at different depths for the Amani Mara Hippo Pool. See the Methods and Supplementary Information in the manuscript for more details about the location of the pool.
DOI: 10.5061/dryad.nh6hn04/7
title: Robot_Boat_Hippo_Pool_Stratification_Croc

description: This file contains the conductivity measurements taken at different depths for the Croc Hippo Pool. See the Methods and Supplementary Information in the manuscript for more details about the location of the pool.
DOI: 10.5061/dryad.nh6hn04/8
title: Robot_Boat_Hippo_Pool_Stratification_Emarti

description: This file contains the conductivity measurements taken at different depths for the Emarti Pool. See the Methods and Supplementary Information in the manuscript for more details about the location of the pool.
DOI: 10.5061/dryad.nh6hn04/9
title: Robot_Boat_Hippo_Pool_Stratification_HPA

description: This file contains the conductivity measurements taken at different depths for the HPA Hippo Pool. See the Methods and Supplementary Information in the manuscript for more details about the location of the pool.
DOI: 10.5061/dryad.r3mk2ng/1
title: PairBond_EMWARR

description: Excel file containing individual and pair-level data used in analysis
DOI: 10.17632/d9k46jnng9.1
title: Data for: USE OF FUZZY LOGIC FOR MEASURING PRACTICES AND PERFORMANCES OF SUPPLY CHAIN

description: Calculations for the section 5 of the article.
DOI: 10.17632/gtcd25v235.1
title: Data for: Global epidemiological analysis of prevalence and risk factors associated with the deep digital flexor tendinopathy in the equine distal limb: 100 cases

description: This document describes the: age, sportive activity, breed and gender of all the horses diagnosed with distal deep digital flexor tendinopathy and also for the entire population of horses consulted in the same time interval.
DOI: 10.17632/y7sm65fdcn.1
title: Data for: Thermodynamic calculation of the T0 curve and metastable phase diagrams of the Ti–M (M = Mo, V, Nb, Cr, Al) binary systems

description: The TDB file for the Ti–M (M = Mo, V, Nb, Cr, Al)systms obatained in this work
DOI: 10.5061/dryad.0n94k1s/1
title: MERP_Apr16_CTS_SeabirdEnvironment_UTM30N

description: Seabird, Prey and Environmental data.
DOI: 10.5061/dryad.0vm37.1/11.1
title: KEGG.result

description: Functional annotation(KEGG)
DOI: 10.5061/dryad.0vm37.1/14.1
title: README

description: readme
DOI: 10.5061/dryad.0vm37.1/2.1
title: Gmm.final.cds

description: Nucleotide FASTA format file of all gene coding sequences, with or without alternative splice variants
DOI: 10.5061/dryad.0vm37.1/3.1
title: Gmm.final.gff

description: GFF3 format representation of all mRNA sequences (UTR, CDS). Genomic coordinates are relative to the reference
DOI: 10.5061/dryad.142q2vb/1
title: code_and_data

description: A zipped folder containing both code and data in separate folders. Each code file is explained in the comments inside the code files. The data files are grouped  into fights. Each fight is labelled according to the day each fight was filmed and the order in which this was done. Inside a fight folder, the tracked trajectories can be found in the data2_x.mat files. Colorx.mat files give animal color for some videos.
DOI: 10.5061/dryad.1j5h875/1
title: CodeAndData

description: Zip files containing all R code and data used.
DOI: 10.5061/dryad.2007vq5/1
title: TRNK-MATK-6-25-09short3.nxs

description: Aligned sequences for the TRNK-MATK region.
DOI: 10.5061/dryad.2007vq5/2
title: TRPT-10-13-08.nxs

description: Sesbania TRPT sequence alignment
DOI: 10.5061/dryad.2007vq5/3
title: ITS6-25-09 For Genbank

description: Sesbania ITS sequence alignment
DOI: 10.5061/dryad.20257/5
title: Supporting Information File 1

description: Supplementary Tables
DOI: 10.5061/dryad.20257/6
title: Supporting Information File 2

description: Extra Materials and Methods
DOI: 10.5061/dryad.240n5f6/1
title: urszanetal_JAE_data

description: The full database.
DOI: 10.5061/dryad.387c58v/28
title: RAxML, partitioned, UCE-only data, 50% occupancy

description: Resulting phylogeny from the RAxML, partitioned, UCE-only data, 50% occupancy analysis.
DOI: 10.5061/dryad.387c58v/29
title: RAxML, partitioned, UCE-only data, 25% occupancy

description: Phylip file for the RAxML, partitioned, UCE-only data, 25% occupancy analysis.
DOI: 10.5061/dryad.387c58v/30
title: RAxML, partitioned, UCE-only data, 25% occupancy

description: Resulting phylogeny from the RAxML, partitioned, UCE-only data, 25% occupancy analysis.
DOI: 10.5061/dryad.387c58v/31
title: RAxML, partitioned, exon-only data, 70% occupancy

description: Partition file for the RAxML, partitioned, exon-only data, 70% occupancy analysis.
DOI: 10.5061/dryad.387c58v/33
title: RAxML, partitioned, exon-only data, 50% occupancy

description: Partition file for the RAxML, partitioned, exon-only data, 50% occupancy analysis.
DOI: 10.5061/dryad.387c58v/34
title: RAxML, partitioned, exon-only data, 50% occupancy

description: Resulting phylogeny from the RAxML, partitioned, exon-only data, 50% occupancy analysis.
DOI: 10.5061/dryad.387c58v/35
title: RAxML, partitioned, exon-only data, 25% occupancy

description: Partition file for the RAxML, partitioned, exon-only data, 25% occupancy analysis.
DOI: 10.5061/dryad.50kn1p0/1
title: Complete data set

description: Data on farm-level structural variables, farmland bird inventory data, and uptake of conservation measures, collected through the Swedish Volunteer & Farmer Alliance. A Readme, including explanations for each column, is found in the second tab of the xlsx-file.
DOI: 10.5061/dryad.6dq3r10/1
title: NYSERDA_SLAMM_DMMT

description: This data repository contains all of the data files required to run the Dynamic Marsh Management Tool (DMMT) as described in the manuscript “Evaluating the costs and benefits of marsh-management strategies while accounting for uncertain sea-level rise and ecosystem response.”
DOI: 10.5061/dryad.7pj51v0/40
title: "Medium" cell-free DNA sequencing files - C2
DOI: 10.5061/dryad.7pj51v0/41
title: "Medium" cell-free DNA sequencing files - C3
DOI: 10.5061/dryad.7pj51v0/42
title: "Medium" cell-free DNA sequencing files - P1
DOI: 10.5061/dryad.7pj51v0/43
title: "Medium" cell-free DNA sequencing files - P2
DOI: 10.5061/dryad.7pj51v0/44
title: "Medium" cell-free DNA sequencing files - M8
DOI: 10.5061/dryad.7pj51v0/45
title: "Long" cell-free DNA sequencing files - M1
DOI: 10.5061/dryad.7pj51v0/46
title: "Long" cell-free DNA sequencing files - M2
DOI: 10.5061/dryad.7pj51v0/47
title: "Long" cell-free DNA sequencing files - M3
DOI: 10.5061/dryad.9v8f5v5/1
title: Complete set of SNPs (Antilophia_7070_SNPs.vcf)
DOI: 10.5061/dryad.9v8f5v5/3
title: Dadi input, obtained from a single snp per loci. (Antilophia.dadi)
DOI: 10.5061/dryad.9v8f5v5/4
title: Joint SFS between the Helmeted manakin and Araripe manakin used as input on Fastsimcoal (Antilophia_jointMAFpop1_0.obs)
DOI: 10.5061/dryad.9v8f5v5/5
title: Antilophia_GPhoCSG-PhoCS control file (Antilophia_GPhocs.ctl)
DOI: 10.5061/dryad.9v8f5v5/6
title: G-PhoCS sequence file (Antilophia_GPhoCS_Sequences.txt)
DOI: 10.5061/dryad.9v8f5v5/7
title: Bayescan input file (Antilophia_bialelic_bayescan.txt)
DOI: 10.5061/dryad.cd7jv41/1
title: All data from " Mutual fitness benefits arise during coevolution in a nematode-microbe model"

description: Excel file of data, one spreadsheet per figure.
DOI: 10.5061/dryad.ct65669/32
title: TOG-HUHC-Vamps-Leray9_S9_L001_R2_001.fastq
DOI: 10.5061/dryad.ct65669/34
title: Vamps-16s-1_S5_L001_R2_001.fastq
DOI: 10.5061/dryad.ct65669/35
title: Vamps-16s-2_S6_L001_R1_001.fastq
DOI: 10.5061/dryad.ct65669/36
title: Vamps-16s-2_S6_L001_R2_001.fastq
DOI: 10.5061/dryad.ct65669/37
title: Vamps-16s-9_S7_L001_R1_001.fastq
DOI: 10.5061/dryad.ct65669/38
title: Vamps-16s-9_S7_L001_R2_001.fastq
DOI: 10.5061/dryad.g67k34g/1
title: Data_De Frenne et al
DOI: 10.5061/dryad.gf13b2m/1
title: Zip file with data from "Cascading effects of a top predator on intraspecific competition at intermediate and basal trophic levels"

description: Zip archive of 2 *.csv files containing data from "Cascading effects of a top predator on intraspecific competition at intermediate and basal trophic levels."
DOI: 10.5061/dryad.h6j0g4p/7
title: Virtual dataset_P.zhaoi_CASENT0790671

description: Virtual dataset for Proceratium zhaoi (CASENT0790671) paratype worker: complete micro-CT scanning raw dataset (DICOM format - 993 slices), 3D surface (ply format), 3D rotation video (mp4 format), 3D model volume rendering snapshots (tiff format), and montage photos (tiff format)
DOI: 10.5061/dryad.h6j0g4p/8
title: Virtual dataset_P.zhaoi_nujiangense_CASENT0790672

description: Virtual dataset for Proceratium zhaoi (CASENT0790672) paratype worker of junior synonym P. nujiangense: complete micro-CT scanning raw dataset (DICOM format - 993 slices), 3D surface (ply format), 3D rotation video (mp4 format), 3D model volume rendering snapshots (tiff format), and montage photos (tiff format)
DOI: 10.5061/dryad.k4b688s/1
title: Annotated Semantic Predications from SemMedDB

description: This data was collected from the Semantic MEDLINE Database (SemMedDb) ver 30, December 2016 release. It contains sentences, subject/object entity information, and predicate information as output by SemRep. It also contains annotations indicating whether each semantic predication is indeed expressed in the sentence.
DOI: 10.5061/dryad.n8m9c.1
title: Data from: Distinguishing between convergent evolution and violation of the molecular clock for three taxa
DOI: 10.5061/dryad.n8m9c.1/1.1
title: Python Script for Comparing Non-Clock-Like Triplets to Convergence-Divergence Models

description: The attached text file is intended to run in Python. Edge parameters are simulated from a 3-taxon non-clock-like tree and tested to see whether they are consistent with a 3-taxon convergence-divergence model. Similarly, epoch parameters are simulated from a 3-taxon convergence-divergence model and tested to see whether they are consistent with a 3-taxon non-clock-like tree.
DOI: 10.5061/dryad.n8m9c.1/2.1
title: Online Appendix for Splitting Operator

description: Online-only appendix describing the mathematical details of the splitting operator and how to generate rate matrices.
DOI: 10.5061/dryad.n8m9c.2/2.2
title: Online Appendix for Splitting Operator

description: Online-only appendix describing the mathematical details of the splitting operator and how to generate rate matrices.
DOI: 10.5061/dryad.nh6hn04/11
title: README

description: README file describing the data contained within this repository.
DOI: 10.5061/dryad.nh6hn04/12
title: Robot_Boat_Hippo_Pool_Stratification_GPS_AmaniMara

description: This file contains the conductivity measurements taken at different depths for the Amani Mara Hippo Pool along with the GPS information (Latitude and Longitude in decimal degrees). See the Methods and Supplementary Information in the manuscript for more details about the location of the pool.
DOI: 10.5061/dryad.nh6hn04/13
title: Sediment_Fingeprinting_Sources

description: This file contains the raw elemental data for the 4 different types of sources within the catchment (Upper Mara, Middle Mara, Talek, and Hippo). All elemental data is provided in ppm (parts per million).
DOI: 10.5061/dryad.nh6hn04/15
title: Sediment_Fingeprinting_March14-2014_Samples

description: This file contains the raw elemental data for the time series of samples collected at the Purungat bridge beginning on March 14, 2014. All elemental data is provided in ppm (parts per million).
DOI: 10.5061/dryad.nh6hn04/16
title: Sediment_Fingeprinting_Oct27-2012_Samples

description: This file contains the raw elemental data for the time series of samples collected at the Purungat bridge beginning on October 27, 2012. All elemental data is provided in ppm (parts per million).
DOI: 10.5061/dryad.nh6hn04/17
title: Robot_Boat_Hippo_Pool_Stratification_GPS_Emarti

description: This file contains the conductivity measurements taken at different depths for the Emarti Pool along with the GPS information (Latitude and Longitude in decimal degrees). See the Methods and Supplementary Information in the manuscript for more details about the location of the pool.
DOI: 10.5061/dryad.q778387/1
title: Kerangas Forest Plots Data

description: Text to files on Bruenig’s KF plot data
Of the 57 small plots in Bornean Kerangas (Heath) Forest recorded by E. F. Bruenig between 1959 and 1963, in Sarawak (Malaysia) and Brunei (Bruenig 1974), 38 (numbered 20-57) were re-analyzed by Newbery (1991). Six plots [29,31,32,42,54,55] were 1, two 2 [45,49], five 3 [34,35,46,56,57], and twenty-five 5 [the remainder], square chains in area (1 ch2 = 405 m2). The common minimum tree girth (gbh) was 3” (7.62 cm): all trees were measured for gbh and identified. Tree counts were divided into three size (gbh) classes: I, 3.0 – 11.9” (7.6 – 30.2 cm); II, 12.0 – 23.9” (30.5 – 60.7 cm); and III, ≥ 24.0” (≥ 61.0 cm). The two main data files are: ‘kerplot_dat.txt’ and ‘kerdict_dat.txt’. The first file lists all trees per plot, as columns (1) plot – plot number, (2) gen – genus code, (3) spec – species code, (4 – 6) numbers of trees in size classes I – III; (7) total number of trees, (8) BA, basal area, in cm2. This a space-delimited ASCII file, values left-justified, readable by most statistical programs and as input to R. The second file lists all the codes with their full Latin names, grouped by family (637 taxa). The names were those given as of 1974: the modern user may want to revise them using an international plant names’ index. Full background details to the study are found in Bruenig (1974). Plot locations and environmental variables are also given in Fig. 1 and Table 3 of Newbery (1991). For the purposes of numerical analysis, basal area and density of each species per plot were calculated per 5-ch2 (cm2 and N resp.). The data set was reduced to 381 common taxa: procedures and criteria are given in Newbery (1991). Three further files given here are: basal area and density abundances in the 38 plots as ‘kerbar38_dat.txt’ and ‘kerden38_dat.txt’, with a list of the corresponding common-taxon codes in ‘ker38_codes.txt’. The two abundance files are written in the Cornell Condensed Format of programs DECORANA and CANOCO. With the transformations and options described normalized PCA ordinations of the plots in Newbery (1991) can be reproduced.
Reference:
Brunig, E. F. 1974. Ecological Studies in the Kerangas Forests of Sarawak and Brunei. Borneo Literature Bureau, Kuching, for the Sarawak Forest Department.