cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.860218
title: Microsensor studies on Padina from a natural CO2 seep: implications of morphology on acclimation to low pH

description: Low seawater pH can be harmful to many calcifying marine organisms, but the calcifying macroalgae Padina spp. flourish at natural submarine carbon dioxide seeps where seawater pH is low. We show that the microenvironment created by the rolled thallus margin of Padina australis facilitates supersaturation of CaCO3 and calcifi-cation via photosynthesis-induced elevated pH. Using microsensors to investigate oxygen and pH dynamics in the microenvironment of P. australis at a shallow CO2 seep, we found that, under saturating light, the pH inside the microenvironment (pHME) was higher than the external seawater (pHSW) at all pHSW levels investigated, and the difference (i.e., pHME-pHSW) increased with decreasing pHSW (0.9 units at pHSW 7.0). Gross photosynthesis (Pg) inside the microenvironment increased with decreasing pHSW, but algae from the control site reached a threshold at pH 6.5. Seep algae showed no pH threshold with respect to Pg within the pHSW range investigated. The external carbonic anhydrase (CA) inhibitor, acetazolamide, strongly inhibited Pg of P. australis at pHSW 8.2, but the effect was diminished under low pHSW (6.4-7.5), suggesting a greater dependence on membrane-bound CA for the dehydration of HCO3- ions during dissolved inorganic carbon uptake at the higher pHSW. In comparison, a calcifying green alga, Halimeda cuneata f. digitata, was not inhibited by AZ, suggesting efficient bicarbonate transport. The ability of P. australis to elevate pHME at the site of calcification and its strong dependence on CA may explain why it can thrive at low pHSW.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-05-05.
description: Supplement to: Hofmann, Laurie C; Fink, Artur; Bischof, Kai; de Beer, Dirk (2015): Microsensor studies on Padina from a natural CO2 seep: implications of morphology on acclimation to low pH. Journal of Phycology, 51(6), 1106-1115
DOI: 10.1594/pangaea.875108
title: Seawater carbonate chemistry and metabolic data of Arctic pteropods in lab experiment

description: Thecosome pteropods are considered highly sensitive to ocean acidification. During the Arctic winter, increased solubility of CO2 in cold waters intensifies ocean acidification and food sources are limited. Ocean warming is also particularly pronounced in the Arctic. Here, we present the first data on metabolic rates of two pteropod species (Limacina helicina, Limacina retroversa) during the Arctic winter at 79°N (polar night/twilight phase). Routine oxygen consumption rates and the metabolic response [oxygen consumption (MO2), ammonia excretion (NH3), overall metabolic balance (O:N)] to elevated levels of pCO2 and temperature were examined. Our results suggest lower routine MO2 rates for both Limacina species in winter than in summer. In an 18-h experiment, both pCO2 and temperature affected MO2 of L. helicina and L. retroversa. After a 9-day experiment with L. helicina all three metabolic response variables were affected by the two factors with interactive effects in case of NH3 and O:N. The response resembled a “hormesis-type” pattern with up-regulation at intermediate pCO2 and the highest temperature level. For L. retroversa, NH3 excretion was affected by both factors and O:N only by temperature. No significant effects of pCO2 or temperature on MO2 were detected. Metabolic up-regulation will entail higher energetic costs that may not be covered during periods of food limitation such as the Arctic winter and compel pteropods to utilize storage compounds to a greater extent than usual. This may reduce the fitness and survival of overwintering pteropods and negatively impact their reproductive success in the following summer.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2017-05-10.
description: Supplement to: Lischka, Silke; Riebesell, Ulf (2017): Metabolic response of Arctic pteropods to ocean acidification and warming during the polar night/twilight phase in Kongsfjord (Spitsbergen). Polar Biology, 40(6), 1211-1227
DOI: 10.1594/pangaea.839344
title: Nutrient availability affects the response of the calcifying chlorophyte Halimeda opuntia (L.) J.V. Lamouroux to low pH

description: Atmospheric carbon dioxide emissions cause a decrease in the pH and aragonite saturation state of surface ocean water. As a result, calcifying organisms are expected to suffer under future ocean conditions, but their physiological responses may depend on their nutrient status. Because many coral reefs experience high inorganic nutrient loads or seasonal changes in nutrient availability, reef organisms in localized areas will have to cope with elevated carbon dioxide and changes in inorganic nutrients. Halimeda opuntia is a dominant calcifying primary producer on coral reefs that contributes to coral reef accretion. Therefore, we investigated the carbon and nutrient balance of H. opuntia exposed to elevated carbon dioxide and inorganic nutrients. We measured tissue nitrogen, phosphorus and carbon content as well as the activity of enzymes involved in inorganic carbon uptake and nitrogen assimilation (external carbonic anhydrase and nitrate reductase, respectively). Inorganic carbon content was lower in algae exposed to high CO2, but calcification rates were not significantly affected by CO2 or inorganic nutrients. Organic carbon was positively correlated to external carbonic anhydrase activity, while inorganic carbon showed the opposite correlation. Carbon dioxide had a significant effect on tissue nitrogen and organic carbon content, while inorganic nutrients affected tissue phosphorus and N:P ratios. Nitrate reductase activity was highest in algae grown under elevated CO2 and inorganic nutrient conditions and lowest when phosphate was limiting. In general, we found that enzymatic responses were strongly influenced by nutrient availability, indicating its important role in dictating the local responses of the calcifying primary producer H. opuntia to ocean acidification.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-11-24.
description: Supplement to: Hofmann, Laurie C; Heiden, Jasmin; Bischof, Kai; Teichberg, Mirta (2013): Nutrient availability affects the response of the calcifying chlorophyte Halimeda opuntia (L.) J.V. Lamouroux to low pH. Planta, 239(1), 231-242
DOI: 10.1594/pangaea.867382
title: Impact of high CO2 on the geochemistry of the coralline algae Lithothamnion glaciale

description: Coralline algae are a significant component of the benthic ecosystem. Their ability to withstand physical stresses in high energy environments relies on their skeletal structure which is composed of high Mg-calcite. High Mg-calcite is, however, the most soluble form of calcium carbonate and therefore potentially vulnerable to the change in carbonate chemistry resulting from the absorption of anthropogenic CO2 by the ocean. We examine the geochemistry of the cold water coralline alga Lithothamnion glaciale grown under predicted future (year 2050) high pCO2 (589 matm) using Electron microprobe and NanoSIMS analysis. In the natural and control material, higher Mg calcite forms clear concentric bands around the algal cells. As expected, summer growth has a higher Mg content compared to the winter growth. In contrast, under elevated CO2 no banding of Mg is recognisable and overall Mg concentrations are lower. This reduction in Mg in the carbonate undermines the accuracy of the Mg/Ca ratio as proxy for past temperatures in time intervals with significantly different carbonate chemistry. Fundamentally, the loss of Mg in the calcite may reduce elasticity thereby changing the structural properties, which may affect the ability of L. glaciale to efficiently function as a habitat former in the future ocean.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-10-31.
description: Supplement to: Ragazzola, Federica; Foster, Laura C; Jones, C J; Scott, T B; Fietzke, Jan; Kilburn, M R; Schmidt, Daniela N (2016): Impact of high CO2 on the geochemistry of the coralline algae Lithothamnion glaciale. Scientific Reports, 6, 20572
DOI: 10.1594/pangaea.868682
title: Interactive effects of ocean acidification and nitrogen limitation on two bloom-forming dinoflagellate species

description: Global climate change involves an increase in oceanic CO2 concentrations as well as thermal stratification of the water column, thereby reducing nutrient supply from deep to surface waters. Changes in inorganic carbon (C) or nitrogen (N) availability have been shown to affect marine primary production, yet little is known about their interactive effects. To test for these effects, we conducted continuous culture experiments under N limitation and exposed the bloom-forming dinoflagellate species Scrippsiella trochoidea and Alexandrium fundyense (formerly A. tamarense) to CO2 partial pressures ( pCO2) ranging between 250 and 1000 µatm. Ratios of particulate organic carbon (POC) to organic nitrogen (PON) were elevated under N limitation, but also showed a decreasing trend with increasing pCO2. PON production rates were highest and affinities for dissolved inorganic N were lowest under elevated pCO2, and our data thus demonstrate a CO2-dependent trade-off in N assimilation. In A. fundyense, quotas of paralytic shellfish poisoning toxins were lowered under N limitation, but the offset to those obtained under N-replete conditions became smaller with increasing pCO2. Consequently, cellular toxicity under N limitation was highest under elevated pCO2. All in all, our observations imply reduced N stress under elevated pCO2, which we attribute to a reallocation of energy from C to N assimilation as a consequence of lowered costs in C acquisition. Such interactive effects of ocean acidification and nutrient limitation may favor species with adjustable carbon concentrating mechanisms and have consequences for their competitive success in a future ocean.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-11-22.
description: Supplement to: Eberlein, Tim; Van de Waal, Dedmer B; Brandenburg, Karen; John, Uwe; Voss, Maren; Achterberg, Eric Pieter; Rost, Björn (2016): Interactive effects of ocean acidification and nitrogen limitation on two bloom-forming dinoflagellate species. Marine Ecology Progress Series, 543, 127-140
DOI: 10.1594/pangaea.969056
title: Seawater carbonate chemistry and oxygen and pH gradients in coral boundary layer

description: Here, we investigated these effects on the reef-building corals Acropora cytherea, Pocillopora verrucosa, and Porites cylindrica. We preconditioned corals to a control (pH 8.0) and OA (pH 7.8) treatment for four months and tested how low flow (2 cm s−1) and moderate flow (6 cm s−1) affected O2 and H+ CBL traits (thickness, surface concentrations, and flux) inside a unidirectional-flow chamber.This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Figshare (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-06-17.
DOI: 10.1594/pangaea.966185
title: Seawater carbonate chemistry and growth and nutritional value of canopy-forming kelps

description: This dataset results from two, month-long global change laboratory experiments conducted in Sitka, Alaska from February 12 to March 18, 2020 (winter experiment) and August 15 to September 16, 2020 (summer experiment). These experiments were used to tease apart the effects of seasonal variation in light availability and nutrients on the response of three high-latitude kelp species (Macrocystis pyrifera, Hedophyllum nigripes, and Neoagarum fimbriatum) to pH and temperature. Experimental controls were designed to approximate current environmental conditions in Sitka Sound, and treatments were based on projected end-of-century scenarios of ocean acidification (OA) and warming (OW) for this region. At the end of the experiments, the investigators assessed the seasonal impact of OW and OA on kelp growth rates, thallus nitrogen content, and carbon acquisition strategy based on thallus δ13C values. Finally, to test whether kelp palatability was impacted by future warming and acidification, tissue of H. nigripes and N. fimbriatum grown during the experiments was used to perform feeding assays with a common kelp forest consumer.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-03-06.
DOI: 10.1594/pangaea.959709
title: Seawater carbonate chemistry and genetic diversity of juvenile yellowtail kingfish (Seriola lalandi)

description: Estimating the heritability and genotype by environment (GxE) interactions of performance-related traits (e.g., growth, survival, reproduction) under future ocean conditions is necessary for inferring the adaptive potential of marine species to climate change. To date, no studies have used quantitative genetics techniques to test the adaptive potential of large pelagic fishes to the combined effects of elevated water temperature and ocean acidification. We used an experimental approach to test for heritability and GxE interactions in morphological traits of juvenile yellowtail kingfish, Seriola lalandi, under current-day and predicted future ocean conditions. We also tracked the fate of genetic diversity among treatments over the experimental period to test for selection favoring some genotypes over others under elevated temperature and CO2. Specifically, we reared kingfish to 21 days post hatching (dph) in a fully crossed 2 × 2 experimental design comprising current-day average summer temperature (21°C) and seawater pCO2 (500 μatm CO2) and elevated temperature (25°C) and seawater pCO2 (1,000 μatm CO2). We sampled larvae and juveniles at 1, 11, and 21 dph and identified family of origin of each fish (1,942 in total) by DNA parentage analysis. The animal model was used to estimate heritability of morphological traits and test for GxE interactions among the experimental treatments at 21 dph. Elevated temperature, but not elevated CO2 affected all morphological traits. Weight, length and other morphological traits in juvenile yellowtail kingfish exhibited low but significant heritability under current day and elevated temperature. However, there were no measurable GxE interactions in morphological traits between the two temperature treatments at 21 dph. Similarly, there was no detectable change in any of the measures of genetic diversity over the duration of the experiment. Nonetheless, one family exhibited differential survivorship between temperatures, declining in relative abundance between 1 and 21 dph at 21°C, but increasing in relative abundance between 1 and 21 dph at 25°C. This suggests that this family line could perform better under future warming than in current-day conditions. Our results provide the first preliminary evidence of the adaptive potential of a large pelagic fisheries species to future ocean conditions.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-06-08.
DOI: 10.1594/pangaea.968038
title: Spatial characterization of the composition of the isotope hydrobiogeochemistry along the Warnow River

description: A spatial study of the isotopic hydrobiogeochemical composition along the the Warnow River, which drains into the southern Baltic Sea, was carried out. The sampling took place on 29-30 April 2019 from the source up to the estuary. In addition to in situ physico-chemical parameters, surface water was sampled using a telescopic rod and a plastic beaker and preserved for further analysis. Major and trace elements and selected nutrients were measured using an ICP-OES (iCAP, 7400, Duo Thermo Fischer Scientific). Ammonium (NH4) and nitrate (NO3) concentrations were measured using a QuAAtro autoanalyzer system. Chloride (Cl) concentrations were measured by electrical potential difference precipitation with 0.05 M AgNO3. Dissolved inorganic carbon (DIC), and δ13CDIC were measured using an isotope gas mass spectrometer (MAT 253) coupled to a Gasbench II. Dissolved organic carbon (DOC) and δ13CDOC using an Elementar iso TOC cube with Thermo Electron MAT 253 mass spectrometry, δ18OH2O, and δ2HH2O using a CRDS system (laser cavity-ring-down-spectroscopy, Picarro L2140- I). δ34S and δ18O of SO4 using a gas-isotope mass spectrometer MAT253 (Thermo-Finnigan) with EA-Isolink (Thermo-Fisher-Scientific).
description: Detalit description for multiple methods/devices:EC25 = Schott handylab LF 11/Hach HQ40d multiparameterTemp. = Schott handylab LF 11/Hach HQ40d multiparameterpH = Schott handylab pH 11/Hach HQ40d multiparameterCl = Electric potentiometric precipitation titration with 0.05M AgNO3δ13C(DIC) = Gas mass spectrometry (MAT 253) with Gasbench IIDOC = Elementar iso TOC cube with Termo Electron MAT 253 mass spectrometryFurther descrptions:Empty cells = n.d.
DOI: 10.1594/pangaea.959725
title: Seawater carbonate chemistry and changes in coral reef community structure in response to year‑long incubations under contrasting pCO2 regimes

description: Coral reefs are threatened by ocean acidification (OA), which depresses net calcification of corals, calcified algae, and coral reef communities. These effects have been quantified for many organisms, but most experiments last weeks-to-months, and do not test for effects on community structure. Here, the effects of OA on back reef communities from Mo'orea, French Polynesia (17.492 S, 149.826 W), were tested from 12 November 2015 to 16 November 2016 in outdoor flumes maintained at mean pCO2 levels of 364 µatm, 564 µatm, 761 µatm, and 1067 µatm. The communities consisted of four corals and two calcified algae, with change in mass (Gnet, a combination of gross accretion and dissolution) and percent cover recorded monthly. For massive Porites and Montipora spp., Gnet differed among treatments, and at 1067 µatm (relative to ambient) was reduced and still positive; for Porolithon onkodes, all of which died, Gnet was negative at high pCO2, revealing dissolution (sample sizes were too small for analysis of Gnet for other taxa). Growth rates (% cover month−1) were unaffected by pCO2 for Montipora spp., P. rus, Pocillopora verrucosa, and Lithophyllum kotschyanum, but were depressed for massive Porites at 564 µatm. Multivariate community structure changed among seasons, and the variation under all elevated pCO2 treatments differed from that recorded at 364 µatm, and was greatest under 564 µatm and 761 µatm pCO2. Temporal variation in multivariate community structure could not be attributed solely to the effects of OA on the chemical and physical properties of seawater. Together, these results suggest that coral reef community structure may be more resilient to OA than suggested by the negative effects of high pCO2 on Gnet of their component organisms.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-06-08.