cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.2905/83b507d7-5218-4dc5-95f9-0ec36f073204
title: EDGAR v8.1 Global Mercury Emissions

description: EDGARv8.1 provides emissions not only for the greenhouse gases and air pollutants per sector and country but also for toxic pollutants such as mercury.

EDGARv8.1_toxHg includes:

Total mercury (Hg)and mercury species
Elemental mercury (Hg0; Hg_G)
Gaseous oxidised mercury (Hg2+; Hg_D)
Particle-bound mercury (Hg-P; Hg_P)
Emissions from large scale biomass burning with Savannah burning, forest fires, and sources and sinks from land-use, land-use change and forestry (LULUCF) are excluded.

For the energy related sectors the activity data are primarily based on IEA data from IEA (2022) World Energy Balances, (www.iea.org), all rights reserved, as modified by Joint Research Centre, European Commission, whereas the activity data for the agricultural sectors originate primarily from FAO (2022) (https://www.fao.org/faostat). United States Geological Survey (USGS), UNFCCC and World Steel Association (worldsteel) recent statistics are also used for activity data. The Artisanal Small Scale Gold Mining (ASGM) sector was updated based on information from country reports and scientific literature. Additional information can be found in Muntean et al. (2024, in preparation).

 Compared to the previous EDGAR version, v4.tox2, the following major updates have been included:

 Update of activity data up to 2022
 Updates of technology penetration and abatement measures for power plant
 New spatial proxies as described in Crippa et al. (2024)
DOI: 10.5518/1013
title: Dataset for 'An Innovative Data Processing Method for Studying Nanoparticle Formation in Droplet Microfluidics using X-rays Scattering'

description: X-ray scattering techniques provide a powerful means of characterizing the formation of nanoparticles in solution. Coupling these techniques to segmented-flow microfluidic devices that offer well-defined environments gives access to in situ time-resolved analysis, excellent reproducibility, and eliminates potential radiation damage. However, analysis of the resulting datasets can be extremely time-consuming, where these comprise frames corresponding to the droplets alone, the continuous phase alone, and to both at their interface. We here describe a robust, low-cost, and versatile droplet microfluidics device and use it to study the formation of magnetite nanoparticles with simultaneous synchrotron SAXS and WAXS. Lateral outlet capillaries facilitate the X-ray analysis and reaction times of between a few seconds and minutes can be accommodated. A two-step data processing method is then described that exploits the unique WAXS signatures of the droplets, continuous phase, and interfacial region to identify the frames corresponding to the droplets. These are then sorted, and the background scattering is subtracted using an automated frame-by-frame approach, allowing the signal from the nanoparticles to be isolated from the raw data. Modeling these data gives quantitative information about the evolution of the sizes and structures of the nanoparticles, in agreement with TEM observations. This versatile platform can be readily employed to study a wide range of dynamic processes in heterogeneous systems.
DOI: 10.60712/si-id41627.1
title: StrainInfo SI-ID 41627.1

description: StrainInfo dataset 41627 about a strain of Neisseria gonorrhoeae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41628.1
title: StrainInfo SI-ID 41628.1

description: StrainInfo dataset 41628 about a strain of Neisseria gonorrhoeae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.x9d6fg
title: Occurrence Download

description: A dataset containing 1780 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callithrix jacchus (Linnaeus, 1758)"
 ]
}

 The dataset includes 1780 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0245792-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id41491.1
title: StrainInfo SI-ID 41491.1

description: StrainInfo dataset 41491 about a strain of Bacillus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41492.1
title: StrainInfo SI-ID 41492.1

description: StrainInfo dataset 41492 about a strain of Vibrio cholerae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41493.1
title: StrainInfo SI-ID 41493.1

description: StrainInfo dataset 41493 about a strain of Vibrio cholerae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41494.1
title: StrainInfo SI-ID 41494.1

description: StrainInfo dataset 41494 about a strain of Vibrio cholerae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41547.1
title: StrainInfo SI-ID 41547.1

description: StrainInfo dataset 41547 about a strain of Vibrio cholerae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41548.1
title: StrainInfo SI-ID 41548.1

description: StrainInfo dataset 41548 about a strain of Lactiplantibacillus plantarum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41549.1
title: StrainInfo SI-ID 41549.1

description: StrainInfo dataset 41549 about a strain of Paenibacillus polymyxa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.drf6hy
title: Occurrence Download

description: A dataset containing 1734 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Issue is Geodetic datum assumed WGS84",
 "HasCoordinate is true",
 "TaxonKey is Manilkara zapota (L.) P.Royen",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1734 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006327-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.snh3ta
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((105.5 17,110.5 17,110.5 22,105.5 22,105.5 17))",
 "TaxonKey is Caesionidae"
 ]
}

 The dataset includes 37 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0245818-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id41550.1
title: StrainInfo SI-ID 41550.1

description: StrainInfo dataset 41550 about a strain of Actinoplanes. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.kn4r86
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Margrethia valentinae Parin, 1982"
 ]
}

 The dataset includes 31 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005536-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id41629.1
title: StrainInfo SI-ID 41629.1

description: StrainInfo dataset 41629 about a strain of Pantoea ananatis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41630.1
title: StrainInfo SI-ID 41630.1

description: StrainInfo dataset 41630 about a strain of Pantoea ananatis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41631.1
title: StrainInfo SI-ID 41631.1

description: StrainInfo dataset 41631 about a strain of Pantoea ananatis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41632.1
title: StrainInfo SI-ID 41632.1

description: StrainInfo dataset 41632 about a strain of Klebsiella oxytoca. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.5281/zenodo.11658105
title: scTransformers - Dataset : Cross Tissue Immune Cells

description: The annotation of cell types on single cell RNA-seq data is a complex, uncertain and time-consuming task, requiring several methods and tools to be able to annotate cells appropriately and efficiently. To overcome these problems and uncertainties, numerous tools and scientific articles have emerged over the years. The rise of artificial intelligence in our lives (notably through chatGPT), has also imposed itself on the scientific world, bringing novelty and innovation to existing techniques and tools. These tools need to be tested and studied to verify their effectiveness. In this project, two cell annotation tools in single cell RNA-seq named scBERT and scGPT are of interest to CB2M because of their ability to resolve and avoid the uncertainties and problems mentioned above. We study here, through various analyses, including cross-validation and the use of multiple qualitative and numerical indicators, that cell annotation by those tools are effective for annotating cells from scRNA-seq.

Provided files :



Human_Thymus_Development_Atlas_reference.tar.gz : Cell atlas of human thymic development : 15 embryonic and fetal thymuses covering stages of thymic development from 7 post-conceptional weeks (PCW) to 17 PCW, and 9 postnatal thymuses from human pediatric and adult samples. It contains 255,901 cells, 32,922 genes and 33 different cell types.

Human_Thymus_Development_Atlas_output.tar.gz : All analysis output files

Human_Thymus_Development_Atlas_container.tar.gz : Docker image and Singularity mages used for the analysis


See https://github.com/CIML-bioinformatic/CB2M_scTransformers for more details.
DOI: 10.5281/zenodo.11658106
title: scTransformers - Dataset : Cross Tissue Immune Cells

description: The annotation of cell types on single cell RNA-seq data is a complex, uncertain and time-consuming task, requiring several methods and tools to be able to annotate cells appropriately and efficiently. To overcome these problems and uncertainties, numerous tools and scientific articles have emerged over the years. The rise of artificial intelligence in our lives (notably through chatGPT), has also imposed itself on the scientific world, bringing novelty and innovation to existing techniques and tools. These tools need to be tested and studied to verify their effectiveness. In this project, two cell annotation tools in single cell RNA-seq named scBERT and scGPT are of interest to CB2M because of their ability to resolve and avoid the uncertainties and problems mentioned above. We study here, through various analyses, including cross-validation and the use of multiple qualitative and numerical indicators, that cell annotation by those tools are effective for annotating cells from scRNA-seq.

Provided files :



Human_Thymus_Development_Atlas_reference.tar.gz : Cell atlas of human thymic development : 15 embryonic and fetal thymuses covering stages of thymic development from 7 post-conceptional weeks (PCW) to 17 PCW, and 9 postnatal thymuses from human pediatric and adult samples. It contains 255,901 cells, 32,922 genes and 33 different cell types.

Human_Thymus_Development_Atlas_output.tar.gz : All analysis output files

Human_Thymus_Development_Atlas_container.tar.gz : Docker image and Singularity mages used for the analysis


See https://github.com/CIML-bioinformatic/CB2M_scTransformers for more details.
DOI: 10.60712/si-id41495.1
title: StrainInfo SI-ID 41495.1

description: StrainInfo dataset 41495 about a strain of Vibrio cholerae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41496.1
title: StrainInfo SI-ID 41496.1

description: StrainInfo dataset 41496 about a strain of Bacillus subtilis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.z848eh
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((15.44124 32.90192,43.55388 32.90192,43.55388 44.15192,15.44124 44.15192,15.44124 32.90192))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aegolius funereus (Linnaeus, 1758)",
 "Year 2021-2023"
 ]
}

 The dataset includes 40 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0245819-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id41497.1
title: StrainInfo SI-ID 41497.1

description: StrainInfo dataset 41497 about a strain of Streptococcus pneumoniae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41498.1
title: StrainInfo SI-ID 41498.1

description: StrainInfo dataset 41498 about a strain of Kibdelosporangium aridum subsp. aridum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41551.1
title: StrainInfo SI-ID 41551.1

description: StrainInfo dataset 41551 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41552.1
title: StrainInfo SI-ID 41552.1

description: StrainInfo dataset 41552 about a strain of Lacticaseibacillus rhamnosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41553.1
title: StrainInfo SI-ID 41553.1

description: StrainInfo dataset 41553 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41554.1
title: StrainInfo SI-ID 41554.1

description: StrainInfo dataset 41554 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41633.1
title: StrainInfo SI-ID 41633.1

description: StrainInfo dataset 41633 about a strain of Nocardioides albus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41634.1
title: StrainInfo SI-ID 41634.1

description: StrainInfo dataset 41634 about a strain of Nocardioides albus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41635.1
title: StrainInfo SI-ID 41635.1

description: StrainInfo dataset 41635 about a strain of Clostridium acetobutylicum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41499.1
title: StrainInfo SI-ID 41499.1

description: StrainInfo dataset 41499 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41636.1
title: StrainInfo SI-ID 41636.1

description: StrainInfo dataset 41636 about a strain of Streptococcus equinus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41500.1
title: StrainInfo SI-ID 41500.1

description: StrainInfo dataset 41500 about a strain of Bacillus licheniformis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41501.1
title: StrainInfo SI-ID 41501.1

description: StrainInfo dataset 41501 about a strain of Actinomadura. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41502.1
title: StrainInfo SI-ID 41502.1

description: StrainInfo dataset 41502 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41556.1
title: StrainInfo SI-ID 41556.1

description: StrainInfo dataset 41556 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41557.1
title: StrainInfo SI-ID 41557.1

description: StrainInfo dataset 41557 about a strain of Bacillus subtilis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41558.1
title: StrainInfo SI-ID 41558.1

description: StrainInfo dataset 41558 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41559.1
title: StrainInfo SI-ID 41559.1

description: StrainInfo dataset 41559 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41637.1
title: StrainInfo SI-ID 41637.1

description: StrainInfo dataset 41637 about a strain of Klebsiella oxytoca. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41638.1
title: StrainInfo SI-ID 41638.1

description: StrainInfo dataset 41638 about a strain of Enterococcus faecalis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41639.1
title: StrainInfo SI-ID 41639.1

description: StrainInfo dataset 41639 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41640.1
title: StrainInfo SI-ID 41640.1

description: StrainInfo dataset 41640 about a strain of Enterococcus faecalis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41503.1
title: StrainInfo SI-ID 41503.1

description: StrainInfo dataset 41503 about a strain of Streptomyces. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41504.1
title: StrainInfo SI-ID 41504.1

description: StrainInfo dataset 41504 about a strain of Streptomyces. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41505.1
title: StrainInfo SI-ID 41505.1

description: StrainInfo dataset 41505 about a strain of Streptomyces. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.