cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7610756
title: Excel spreadsheet with supplemental data from Higher-level pattern features provide additional information to birds when recognizing and rejecting parasitic eggs

description: Despite a recent explosion of research on pattern recognition, in both neuroscience and computer vision, we lack a basic understanding of how most animals perceive and respond to patterns in the wild. Avian brood parasites and their hosts provide an ideal study system for investigating the mechanisms of pattern recognition. The cuckoo finch <i>Anomalospiza imberbis</i> and its host the tawny-flanked prinia <i>Prinia subflava</i> lay highly polymorphic eggs with a great deal of variation in colour and patterning, with the cuckoo finch capable of close egg mimicry. Behavioural experiments in Zambia have previously shown that prinias use colour and multiple ‘low-level’ (occurring in early-stages of visual processing) pattern attributes, derived from spatial frequency analysis, when rejecting foreign eggs. Here, we explore the extent to which host birds might also use ‘higher-level’ pattern attributes, derived from a feature detection algorithm, to make rejection decisions. Using a SIFT-based pattern recognition algorithm, <i>NaturePatternMatch</i>, we show that hosts are more likely to reject a foreign egg if its higher-level pattern features—which capture information about the shape and orientation of markings—differ from those of the host eggs. A revised statistical model explains about 37% variance in egg rejection behaviour, and differences in colour, low-level and higher-level pattern features all predict rejection, accounting for 42%, 44% and 14% of the explained variance, respectively. Thus, higher-level pattern features provide a small but measurable improvement to the original model and may be especially useful when colour and low-level pattern features provide hosts with little information. Understanding the relative importance of low- and higher-level pattern features is a valuable goal for future work on animal coloration, especially in the contexts of mimicry, camouflage and individual recognition.This article is part of the theme issue ‘The co-evolutionary biology of brood parasitism: from mechanism to pattern’.
DOI: 10.6084/m9.figshare.7610756.v1
title: Excel spreadsheet with supplemental data from Higher-level pattern features provide additional information to birds when recognizing and rejecting parasitic eggs

description: Despite a recent explosion of research on pattern recognition, in both neuroscience and computer vision, we lack a basic understanding of how most animals perceive and respond to patterns in the wild. Avian brood parasites and their hosts provide an ideal study system for investigating the mechanisms of pattern recognition. The cuckoo finch <i>Anomalospiza imberbis</i> and its host the tawny-flanked prinia <i>Prinia subflava</i> lay highly polymorphic eggs with a great deal of variation in colour and patterning, with the cuckoo finch capable of close egg mimicry. Behavioural experiments in Zambia have previously shown that prinias use colour and multiple ‘low-level’ (occurring in early-stages of visual processing) pattern attributes, derived from spatial frequency analysis, when rejecting foreign eggs. Here, we explore the extent to which host birds might also use ‘higher-level’ pattern attributes, derived from a feature detection algorithm, to make rejection decisions. Using a SIFT-based pattern recognition algorithm, <i>NaturePatternMatch</i>, we show that hosts are more likely to reject a foreign egg if its higher-level pattern features—which capture information about the shape and orientation of markings—differ from those of the host eggs. A revised statistical model explains about 37% variance in egg rejection behaviour, and differences in colour, low-level and higher-level pattern features all predict rejection, accounting for 42%, 44% and 14% of the explained variance, respectively. Thus, higher-level pattern features provide a small but measurable improvement to the original model and may be especially useful when colour and low-level pattern features provide hosts with little information. Understanding the relative importance of low- and higher-level pattern features is a valuable goal for future work on animal coloration, especially in the contexts of mimicry, camouflage and individual recognition.This article is part of the theme issue ‘The co-evolutionary biology of brood parasitism: from mechanism to pattern’.
DOI: 10.7284/126835
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN594 using a Northstar 952 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126838
title: Gyrocompass data collected during research cruise EN594 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7610720
title: Microbial taxa affected significantly by warming and acidification and/or condition. from Future climate change is predicted to affect the microbiome and condition of habitat-forming kelp

description: Generalised Linear Models for each microbial taxa under each treatment. Only significant differences are shown (see text).
DOI: 10.6084/m9.figshare.7610720.v1
title: Microbial taxa affected significantly by warming and acidification and/or condition. from Future climate change is predicted to affect the microbiome and condition of habitat-forming kelp

description: Generalised Linear Models for each microbial taxa under each treatment. Only significant differences are shown (see text).
DOI: 10.7284/126839
title: Gyrocompass data collected during research cruise EN594 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126846
title: Meteorological Station data collected during research cruise EN594 using a RM Young 26800 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126842
title: Radiometer data collected during research cruise EN594 using a Eppley RAD instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126843
title: Radiometer data collected during research cruise EN594 using a Eppley RAD instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126840
title: Singlebeam Echosounder data collected during research cruise EN594 using a Knudsen 3260 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126841
title: TSG (Thermosalinograph) data collected during research cruise EN594 using a Sea-Bird SBE-45 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.12883463
title: RAW CSV from GT3X Duplicate

description: The data is from https://springernature.figshare.com/collections/Upper_limb_activity_of_twenty_myoelectric_prosthesis_users_and_twenty_healthy_anatomically_intact_adults_/4457855. Specifically, it is the RAW CSV files zipped from https://springernature.figshare.com/articles/dataset/Unprocessed_raw_30Hz_acceleration_data_stored_as_csv/7946186. It is simply repackaged so that individual files can be downloaded. Please cite the respective data there.
DOI: 10.6084/m9.figshare.12883463.v5
title: RAW CSV from GT3X Duplicate

description: The data is from https://springernature.figshare.com/collections/Upper_limb_activity_of_twenty_myoelectric_prosthesis_users_and_twenty_healthy_anatomically_intact_adults_/4457855. Specifically, it is the RAW CSV files zipped from https://springernature.figshare.com/articles/dataset/Unprocessed_raw_30Hz_acceleration_data_stored_as_csv/7946186. It is simply repackaged so that individual files can be downloaded. Please cite the respective data there.
DOI: 10.7284/126847
title: TSG (Thermosalinograph) data collected during research cruise EN594 using a Sea-Bird SBE-21 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7610591
title: Cerebrovascular reactivity after cessation of menopausal hormone treatment

description: <b>Objective:</b> Women who are currently using menopausal hormone therapy (MHT) have higher cerebrovascular reactivity when compared with postmenopausal women who are not taking MHT; however, the effect of cessation of MHT on cerebrovascular reactivity is not known. Given that MHT can have structural and activational effects on vascular function, this study was performed to characterize cerebrovascular reactivity following cessation of MHT in women at low risk for cerebrovascular disease. <b>Methods:</b> Cerebrovascular reactivity was measured in a subset of women from the Kronos Early Estrogen Prevention Study (KEEPS) 3 years after cessation of the study drug (oral conjugated equine estrogen, transdermal 17β-estradiol, or placebo [PLA]). <b>Results:</b> Age, body mass index, and blood pressure were comparable among groups. At rest, the middle cerebral artery velocity (MCAv), cerebrovascular conductance index, mean arterial pressure, and cerebral pulsatility index did not differ among groups. Slope-based summary measures of cerebrovascular reactivity did not differ significantly among groups. However, utilizing repeated-measures modeling, there was a significant upward shift in MCAv responses (<i>p</i> = 0.029) in the combined MHT group compared with the PLA group. <b>Conclusion</b>: MHT has a marginal sustained effect on cerebrovascular reactivity when measured 3 years after cessation of hormone treatment.
DOI: 10.7284/126850
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise EN595 using a Hawaii UHDAS instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7610591.v1
title: Cerebrovascular reactivity after cessation of menopausal hormone treatment

description: <b>Objective:</b> Women who are currently using menopausal hormone therapy (MHT) have higher cerebrovascular reactivity when compared with postmenopausal women who are not taking MHT; however, the effect of cessation of MHT on cerebrovascular reactivity is not known. Given that MHT can have structural and activational effects on vascular function, this study was performed to characterize cerebrovascular reactivity following cessation of MHT in women at low risk for cerebrovascular disease. <b>Methods:</b> Cerebrovascular reactivity was measured in a subset of women from the Kronos Early Estrogen Prevention Study (KEEPS) 3 years after cessation of the study drug (oral conjugated equine estrogen, transdermal 17β-estradiol, or placebo [PLA]). <b>Results:</b> Age, body mass index, and blood pressure were comparable among groups. At rest, the middle cerebral artery velocity (MCAv), cerebrovascular conductance index, mean arterial pressure, and cerebral pulsatility index did not differ among groups. Slope-based summary measures of cerebrovascular reactivity did not differ significantly among groups. However, utilizing repeated-measures modeling, there was a significant upward shift in MCAv responses (<i>p</i> = 0.029) in the combined MHT group compared with the PLA group. <b>Conclusion</b>: MHT has a marginal sustained effect on cerebrovascular reactivity when measured 3 years after cessation of hormone treatment.
DOI: 10.7284/126858
title: Anemometer data collected during research cruise EN595 using a RM Young 05103 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7610525
title: Studying the collective motions of the adenosine A2A receptor as a result of ligand binding using principal component analysis

description: Adenosine receptors (ARs) belong to family A of GPCRs that are involved in many diseases, including cerebral and cardiac ischemic diseases, immune and inflammatory disorders, etc. Thus, they represent important therapeutic targets to treat these conditions. Computational techniques such as molecular dynamics (MD) simulations permit researchers to obtain structural information about these proteins, and principal component analysis (PCA) allows for the identification of collective motions. There are available structures for the active form (3QAK) and the inactive form (3EML) of A2AR which permit us to gain insight about their activation/inactivation mechanism. In this work, we have proposed an inverse strategy using MD simulations where the active form was coupled to the antagonist caffeine and the inactive form was coupled to adenosine agonist. Moreover, we have included four reported thermostabilizing mutations in the inactive form to study A2AR structural differences under different conditions. Some observations stand out from the PCA studies. For instance, the apo structures showed remarkable similarities, and the principal components (PCs) were rearranged in a ligand-dependent manner. Additionally, the active conformation was less stable compared to the inactive one. Some PCs inverted their direction in the presence of a ligand, and comparison of the PCs between 3EML and 3EML_ADN showed that adenosine induced major changes in the structure of A2AR. Rearrangement of PCs precedes and drives conformational changes that occur after ligand binding. Knowledge about these conformational changes provides important insights about the activity of A2AR.
DOI: 10.7284/126859
title: Anemometer data collected during research cruise EN595 using a RM Young 05103 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126851
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise EN595 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7610516
title: Tabla 1. Muestra completa

description: Tabla 1. Muestra completa
DOI: 10.6084/m9.figshare.7610525.v2
title: Studying the collective motions of the adenosine A2A receptor as a result of ligand binding using principal component analysis

description: Adenosine receptors (ARs) belong to family A of GPCRs that are involved in many diseases, including cerebral and cardiac ischemic diseases, immune and inflammatory disorders, etc. Thus, they represent important therapeutic targets to treat these conditions. Computational techniques such as molecular dynamics (MD) simulations permit researchers to obtain structural information about these proteins, and principal component analysis (PCA) allows for the identification of collective motions. There are available structures for the active form (3QAK) and the inactive form (3EML) of A2AR which permit us to gain insight about their activation/inactivation mechanism. In this work, we have proposed an inverse strategy using MD simulations where the active form was coupled to the antagonist caffeine and the inactive form was coupled to adenosine agonist. Moreover, we have included four reported thermostabilizing mutations in the inactive form to study A2AR structural differences under different conditions. Some observations stand out from the PCA studies. For instance, the apo structures showed remarkable similarities, and the principal components (PCs) were rearranged in a ligand-dependent manner. Additionally, the active conformation was less stable compared to the inactive one. Some PCs inverted their direction in the presence of a ligand, and comparison of the PCs between 3EML and 3EML_ADN showed that adenosine induced major changes in the structure of A2AR. Rearrangement of PCs precedes and drives conformational changes that occur after ligand binding. Knowledge about these conformational changes provides important insights about the activity of A2AR.
DOI: 10.7284/126848
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN595 using a Furuno GP-90D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126849
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN595 using a Northstar 952 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7610429
title: Modal Parameters Identification Method Based on Symplectic geometry mode decomposition

description: Path nameaccZ-Vertical acceleration signalaccY-Transverse acceleration signalForceNoiseL-The left microphone signalNoiseR-The right microphone signal<br>Data namefor example ,AY1,8.txtAY-Transverse acceleration signal1-Ensor position number8- Number of hammer tapping position<br>Sampling frequency 5000Hz<br><br>
DOI: 10.6084/m9.figshare.7610429.v1
title: Modal Parameters Identification Method Based on Symplectic geometry mode decomposition and Singular Value Decomposition

description: 路径名称accZ-垂直加速度信号accY-横向加速度信号力NoiseL-左侧麦克风信号NoiseR-正确的麦克风信号<br>数据名称例如，AY1,8.txtAY-横向加速度信号1-Ensor位置编号8-锤击位置数<br>采样频率5000Hz
DOI: 10.7284/126852
title: Gyrocompass data collected during research cruise EN595 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126853
title: Gyrocompass data collected during research cruise EN595 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126860
title: Meteorological Station data collected during research cruise EN595 using a RM Young 26800 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7610354
title: Additional file 2: of The effect of a lifestyle intervention in obese pregnant women on gestational metabolic profiles: findings from the UK Pregnancies Better Eating and Activity Trial (UPBEAT) randomised controlled trial

description: Excel file of main analyses and sensitivity analyses results. (XLSX 132 kb)
DOI: 10.7284/126856
title: Radiometer data collected during research cruise EN595 using a Eppley RAD instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7610276
title: Elephants target preferred plants despite background plant odour

description: see "README.txt<br>
DOI: 10.6084/m9.figshare.7610276.v1
title: Elephants target preferred plants despite background plant odour

description: see "README.txt<br>
DOI: 10.6084/m9.figshare.7610354.v1
title: Additional file 2: of The effect of a lifestyle intervention in obese pregnant women on gestational metabolic profiles: findings from the UK Pregnancies Better Eating and Activity Trial (UPBEAT) randomised controlled trial

description: Excel file of main analyses and sensitivity analyses results. (XLSX 132 kb)
DOI: 10.7284/126857
title: Radiometer data collected during research cruise EN595 using a Eppley RAD instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7609988
title: Nicotiana flower morphology photographs

description: Photographs of Nicotiana flowers, both front view and dissected corolla tube. There are five replicate photographs of each flower (denoted by ph1-5 at end of file name).<br>
DOI: 10.7284/126854
title: Singlebeam Echosounder data collected during research cruise EN595 using a Knudsen 3260 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.26180/5c453ff435883
title: Health and Saliva Microbiomes of a Semi-urbanized Indigenous Tribe in Peninsular Malaysia

description: Raw data for the paper "Health and Saliva Microbiomes of a Semi-urbanized Indigenous Tribe in Peninsular Malaysia", including anthropometrics and questionnaire used.
DOI: 10.7284/126855
title: TSG (Thermosalinograph) data collected during research cruise EN595 using a Sea-Bird SBE-45 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126861
title: TSG (Thermosalinograph) data collected during research cruise EN595 using a Sea-Bird SBE-21 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126864
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise EN596 using a Hawaii UHDAS instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126871
title: Anemometer data collected during research cruise EN596 using a RM Young 05103 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7609943
title: Linked Metadata Session at 2019 ESIP Winter Meeting

description: Three talks given during the Linked Metadata Session at the Earth Science Information Partners (ESIP) Winter Meeting in January 2019.
DOI: 10.7284/126872
title: Anemometer data collected during research cruise EN596 using a RM Young 05103 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7609943.v1
title: Linked Metadata Session at 2019 ESIP Winter Meeting

description: Three talks given during the Linked Metadata Session at the Earth Science Information Partners (ESIP) Winter Meeting in January 2019.
DOI: 10.6084/m9.figshare.7609937
title: Supplementary Data. Paleobiology Database occurrences data.xls

description: Occurrences used to calibrate ecological niche models<br>
DOI: 10.7284/126862
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN596 using a Furuno GP-90D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7609931
title: Neill Plant Growth Regulator UPR Supplemental Files

description: Supplemental Files and metadata for Neill Sci Reports article.<br>
DOI: 10.6084/m9.figshare.7609931.v1
title: Neill Plant Growth Regulator UPR Supplemental Files

description: Supplemental Files and metadata for Neill Sci Reports article.<br>
DOI: 10.7284/126863
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN596 using a Northstar 952 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126866
title: Gyrocompass data collected during research cruise EN596 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126867
title: Gyrocompass data collected during research cruise EN596 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition