cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5436562
title: Original research data: time of minimal order in numerical solutions of the mean-field model from A dynamically diluted alignment model reveals the impact of cell turnover on the plasticity of tissue polarity patterns.

description: Time of minimal order data measured from numerical solutions of the ODE system of the mean-field model (main text eq. (19)), using Runge-Kutta scheme with time step 10^(-6). Columns are ID of the ODE, de-novo polarisation rate beta, cell replacement rate delta, neighbour coupling strength epsilon_n, effective neighbour coupling strength epsilon_n_eff (which is a function of beta, delta and epsilon_n), coupling strength to global signal epsilon_s, components s_x and s_y of the global signal vector, end time of the simulation, time interval of simulation logging, and the following observables: minimal order, first time at which minimal order is attained, last time at which minimal order is attained, flag whether tissue polarity inverted direction (false if first and last time of minimal order differ), corrected time of minimal order (the observable, NaN if tissue polarity did not invert direction).
DOI: 10.6084/m9.figshare.5436562.v2
title: Original research data: time of minimal order in numerical solutions of the mean-field model from A dynamically diluted alignment model reveals the impact of cell turnover on the plasticity of tissue polarity patterns.

description: Time of minimal order data measured from numerical solutions of the ODE system of the mean-field model (main text eq. (19)), using Runge-Kutta scheme with time step 10^(-6). Columns are ID of the ODE, de-novo polarisation rate beta, cell replacement rate delta, neighbour coupling strength epsilon_n, effective neighbour coupling strength epsilon_n_eff (which is a function of beta, delta and epsilon_n), coupling strength to global signal epsilon_s, components s_x and s_y of the global signal vector, end time of the simulation, time interval of simulation logging, and the following observables: minimal order, first time at which minimal order is attained, last time at which minimal order is attained, flag whether tissue polarity inverted direction (false if first and last time of minimal order differ), corrected time of minimal order (the observable, NaN if tissue polarity did not invert direction).
DOI: 10.6084/m9.figshare.5436562.v1
title: Original research data: time of minimal order in numerical solutions of the mean-field model from A dynamically diluted alignment model reveals the impact of cell turnover on the plasticity of tissue polarity patterns

description: Time of minimal order data measured from numerical solutions of the ODE system of the mean-field model (main text eq. (19)), using Runge-Kutta scheme with time step 10^(-6). Columns are ID of the ODE, de-novo polarisation rate beta, cell replacement rate delta, neighbour coupling strength epsilon_n, effective neighbour coupling strength epsilon_n_eff (which is a function of beta, delta and epsilon_n), coupling strength to global signal epsilon_s, components s_x and s_y of the global signal vector, end time of the simulation, time interval of simulation logging, and the following observables: minimal order, first time at which minimal order is attained, last time at which minimal order is attained, flag whether tissue polarity inverted direction (false if first and last time of minimal order differ), corrected time of minimal order (the observable, NaN if tissue polarity did not invert direction).
DOI: 10.6084/m9.figshare.5436622
title: Raw data from Progressive ontogenetic niche shift over the prolonged immaturity period of wandering albatrosses.

description: Raw data of blood and feather stable isotopes and mercury in immature wandering albatrosses from Crozet Islands
DOI: 10.6084/m9.figshare.5436622.v2
title: Raw data from Progressive ontogenetic niche shift over the prolonged immaturity period of wandering albatrosses.

description: Raw data of blood and feather stable isotopes and mercury in immature wandering albatrosses from Crozet Islands
DOI: 10.6084/m9.figshare.5436622.v1
title: Raw data from Progressive ontogenetic niche shift over the prolonged immaturity period of wandering albatrosses

description: Raw data of blood and feather stable isotopes and mercury in immature wandering albatrosses from Crozet Islands
DOI: 10.6073/pasta/7412edb1558c31312bda3fc93e28e9f8
title: Jornada Basin LTER: Wireless substation at NPP T-TAYL site: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data is measured at 10cm, 20 cm, and 30 cm soil depths at the NPP T-TAYL substation located in center of 70m x 70m Jornada LTER NPP T-TAYL site. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured every 30 minutes. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.5436667
title: Table S4 from Diatoms dominate the eukaryotic metatranscriptome during spring in coastal ‘dead zone’ sediments.

description: An important characteristic of marine sediments is the oxygen concentration that affects many central metabolic processes. There has been a widespread increase in hypoxia in coastal systems (referred to as ‘dead zones’) mainly caused by eutrophication. Hence, it is central to understand the metabolism and ecology of eukaryotic life in sediments during changing oxygen conditions. Therefore, we sampled coastal ‘dead zone’ Baltic Sea sediment during autumn and spring, and analysed the eukaryotic metatranscriptome from field samples and after incubation in the dark under oxic or anoxic conditions. Bacillariophyta (diatoms) dominated the eukaryotic metatranscriptome in spring and were also abundant during autumn. A large fraction of the diatom RNA reads was associated with the photosystems suggesting a constitutive expression in darkness. Microscope observation showed intact diatom cells and these would, if hatched, represent a significant part of the pelagic phytoplankton biomass. Oxygenation did not significantly change the relative proportion of diatoms nor resulted in any major shifts in metabolic ‘signatures’. By contrast, diatoms rapidly responded when exposed to light suggesting that light is limiting diatom development in hypoxic sediments. Hence, it is suggested that diatoms in hypoxic sediments are on ‘standby’ to exploit the environment if they reach suitable habitats.
DOI: 10.6084/m9.figshare.5436667.v2
title: Table S4 from Diatoms dominate the eukaryotic metatranscriptome during spring in coastal ‘dead zone’ sediments.

description: An important characteristic of marine sediments is the oxygen concentration that affects many central metabolic processes. There has been a widespread increase in hypoxia in coastal systems (referred to as ‘dead zones’) mainly caused by eutrophication. Hence, it is central to understand the metabolism and ecology of eukaryotic life in sediments during changing oxygen conditions. Therefore, we sampled coastal ‘dead zone’ Baltic Sea sediment during autumn and spring, and analysed the eukaryotic metatranscriptome from field samples and after incubation in the dark under oxic or anoxic conditions. Bacillariophyta (diatoms) dominated the eukaryotic metatranscriptome in spring and were also abundant during autumn. A large fraction of the diatom RNA reads was associated with the photosystems suggesting a constitutive expression in darkness. Microscope observation showed intact diatom cells and these would, if hatched, represent a significant part of the pelagic phytoplankton biomass. Oxygenation did not significantly change the relative proportion of diatoms nor resulted in any major shifts in metabolic ‘signatures’. By contrast, diatoms rapidly responded when exposed to light suggesting that light is limiting diatom development in hypoxic sediments. Hence, it is suggested that diatoms in hypoxic sediments are on ‘standby’ to exploit the environment if they reach suitable habitats.
DOI: 10.6084/m9.figshare.5436667.v1
title: Table S4 from Diatoms dominate the eukaryotic metatranscriptome during spring in coastal ‘dead zone’ sediments

description: An important characteristic of marine sediments is the oxygen concentration that affects many central metabolic processes. There has been a widespread increase in hypoxia in coastal systems (referred to as ‘dead zones’) mainly caused by eutrophication. Hence, it is central to understand the metabolism and ecology of eukaryotic life in sediments during changing oxygen conditions. Therefore, we sampled coastal ‘dead zone’ Baltic Sea sediment during autumn and spring, and analysed the eukaryotic metatranscriptome from field samples and after incubation in the dark under oxic or anoxic conditions. Bacillariophyta (diatoms) dominated the eukaryotic metatranscriptome in spring and were also abundant during autumn. A large fraction of the diatom RNA reads was associated with the photosystems suggesting a constitutive expression in darkness. Microscope observation showed intact diatom cells and these would, if hatched, represent a significant part of the pelagic phytoplankton biomass. Oxygenation did not significantly change the relative proportion of diatoms nor resulted in any major shifts in metabolic ‘signatures’. In contrast, diatoms rapidly responded when exposed to light suggesting that light is limiting diatom development in hypoxic sediments. Hence, it is suggested that diatoms in hypoxic sediments are on ‘standby’ to exploit the environment if they reach suitable habitats.
DOI: 10.6084/m9.figshare.5436643
title: Table S3 from Diatoms dominate the eukaryotic metatranscriptome during spring in coastal ‘dead zone’ sediments.

description: An important characteristic of marine sediments is the oxygen concentration that affects many central metabolic processes. There has been a widespread increase in hypoxia in coastal systems (referred to as ‘dead zones’) mainly caused by eutrophication. Hence, it is central to understand the metabolism and ecology of eukaryotic life in sediments during changing oxygen conditions. Therefore, we sampled coastal ‘dead zone’ Baltic Sea sediment during autumn and spring, and analysed the eukaryotic metatranscriptome from field samples and after incubation in the dark under oxic or anoxic conditions. Bacillariophyta (diatoms) dominated the eukaryotic metatranscriptome in spring and were also abundant during autumn. A large fraction of the diatom RNA reads was associated with the photosystems suggesting a constitutive expression in darkness. Microscope observation showed intact diatom cells and these would, if hatched, represent a significant part of the pelagic phytoplankton biomass. Oxygenation did not significantly change the relative proportion of diatoms nor resulted in any major shifts in metabolic ‘signatures’. By contrast, diatoms rapidly responded when exposed to light suggesting that light is limiting diatom development in hypoxic sediments. Hence, it is suggested that diatoms in hypoxic sediments are on ‘standby’ to exploit the environment if they reach suitable habitats.
DOI: 10.6084/m9.figshare.5436643.v2
title: Table S3 from Diatoms dominate the eukaryotic metatranscriptome during spring in coastal ‘dead zone’ sediments.

description: An important characteristic of marine sediments is the oxygen concentration that affects many central metabolic processes. There has been a widespread increase in hypoxia in coastal systems (referred to as ‘dead zones’) mainly caused by eutrophication. Hence, it is central to understand the metabolism and ecology of eukaryotic life in sediments during changing oxygen conditions. Therefore, we sampled coastal ‘dead zone’ Baltic Sea sediment during autumn and spring, and analysed the eukaryotic metatranscriptome from field samples and after incubation in the dark under oxic or anoxic conditions. Bacillariophyta (diatoms) dominated the eukaryotic metatranscriptome in spring and were also abundant during autumn. A large fraction of the diatom RNA reads was associated with the photosystems suggesting a constitutive expression in darkness. Microscope observation showed intact diatom cells and these would, if hatched, represent a significant part of the pelagic phytoplankton biomass. Oxygenation did not significantly change the relative proportion of diatoms nor resulted in any major shifts in metabolic ‘signatures’. By contrast, diatoms rapidly responded when exposed to light suggesting that light is limiting diatom development in hypoxic sediments. Hence, it is suggested that diatoms in hypoxic sediments are on ‘standby’ to exploit the environment if they reach suitable habitats.
DOI: 10.6084/m9.figshare.5436643.v1
title: Table S3 from Diatoms dominate the eukaryotic metatranscriptome during spring in coastal ‘dead zone’ sediments

description: An important characteristic of marine sediments is the oxygen concentration that affects many central metabolic processes. There has been a widespread increase in hypoxia in coastal systems (referred to as ‘dead zones’) mainly caused by eutrophication. Hence, it is central to understand the metabolism and ecology of eukaryotic life in sediments during changing oxygen conditions. Therefore, we sampled coastal ‘dead zone’ Baltic Sea sediment during autumn and spring, and analysed the eukaryotic metatranscriptome from field samples and after incubation in the dark under oxic or anoxic conditions. Bacillariophyta (diatoms) dominated the eukaryotic metatranscriptome in spring and were also abundant during autumn. A large fraction of the diatom RNA reads was associated with the photosystems suggesting a constitutive expression in darkness. Microscope observation showed intact diatom cells and these would, if hatched, represent a significant part of the pelagic phytoplankton biomass. Oxygenation did not significantly change the relative proportion of diatoms nor resulted in any major shifts in metabolic ‘signatures’. In contrast, diatoms rapidly responded when exposed to light suggesting that light is limiting diatom development in hypoxic sediments. Hence, it is suggested that diatoms in hypoxic sediments are on ‘standby’ to exploit the environment if they reach suitable habitats.
DOI: 10.6084/m9.figshare.12293045.v1
title: Hydrothermal synthesis of a dinuclear copper(II) complex with 2-aminopyrimidine and bridging oxalate ligands: <i>in situ</i> degradation of tartaric acid to oxalate and thermal decomposition to CuO nanoparticles

description: A new binuclear copper complex formulated as µ-(C<sub>2</sub>O<sub>4</sub>)-bis([Cu(amp)(NO<sub>3</sub>)(H<sub>2</sub>O)<sub>2</sub>] .H<sub>2</sub>O) (<b>1</b>) has been hydrothermally synthesized by the reaction of Cu(NO<sub>3</sub>)<sub>2</sub> .3H2O with tartaric acid and 2-aminopyrimidine in molar ratio 1:1:1 in water solution. Elemental analyses, spectroscopic methods (IR, UV/Vis), thermal analysis and X-ray diffraction (XRD) studies have been used for characterization of compound <b>1</b>. An important aspect of the preparation of <b>1</b> was <i>in situ</i> degradation of tartaric acid to oxalate. The oxalate ion is bridged between two copper(II) ions and every Cu(II) atom is six coordinated by an O,O′-bidentate oxalate ion, two water molecules, and a nitrogen atom from 2-aminopyrimide. Thermal decomposition of <b>1</b> in the presence of polyethylene glycol led to nano-particles of CuO. Powder XRD and scanning electron microscopy (SEM) were used to characterize the structure and morphology of the synthesized powder. The XRD pattern confirmed the formation of CuO tenorite in monoclinic symmetry.
DOI: 10.6073/pasta/3853303103ff9a440ef2f1d2eeb6e4d4
title: Jornada Basin LTER: Wireless substation at NPP T-WEST site: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data is measured at 10cm, 20 cm, and 30 cm soil depths at the NPP T-WEST substation located in center of 70m x 70m Jornada LTER NPP T-WEST site. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured every 30 minutes. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.5436778
title: Data File from Innovation and social transmission in experimental micro-societies: exploring the scope of cumulative culture in young children.

description: Data file social groups
DOI: 10.6084/m9.figshare.5436778.v2
title: Data File from Innovation and social transmission in experimental micro-societies: exploring the scope of cumulative culture in young children.

description: Data file social groups
DOI: 10.6084/m9.figshare.5436778.v1
title: Data File from Innovation and social transmission in experimental micro-societies: exploring the scope of cumulative culture in young children

description: Data file social groups
DOI: 10.6084/m9.figshare.5441569
title: Raw Data from Individual ant workers show self-control.

description: Often, the first option is not the best. Self-control can allow humans and animals to improve resource intake under such conditions. Self-control in animals is often investigated using intertemporal choice tasks—choosing a smaller reward immediately or a larger reward after a delay. However, intertemporal choice tasks may underestimate self-control, as test subjects may not fully understand the task. Vertebrates show much greater apparent self-control in more natural foraging contexts and spatial discounting tasks than in intertemporal choice tasks. However, little is still known about self-control in invertebrates. Here, we investigate self-control in the black garden ant <i>Lasius niger</i>. We confront individual workers with a spatial discounting task, offering a high-quality reward far from the nest and a poor-quality reward closer to the nest. Most ants (69%) successfully ignored the closer, poorer reward in favour of the further, better one. However, when both the far and the close rewards were of the same quality, most ants (83%) chose the closer feeder, indicating that the ants were indeed exercising self-control, as opposed to a fixation on an already known food source.
DOI: 10.6084/m9.figshare.5441569.v2
title: Raw Data from Individual ant workers show self-control.

description: Often, the first option is not the best. Self-control can allow humans and animals to improve resource intake under such conditions. Self-control in animals is often investigated using intertemporal choice tasks—choosing a smaller reward immediately or a larger reward after a delay. However, intertemporal choice tasks may underestimate self-control, as test subjects may not fully understand the task. Vertebrates show much greater apparent self-control in more natural foraging contexts and spatial discounting tasks than in intertemporal choice tasks. However, little is still known about self-control in invertebrates. Here, we investigate self-control in the black garden ant <i>Lasius niger</i>. We confront individual workers with a spatial discounting task, offering a high-quality reward far from the nest and a poor-quality reward closer to the nest. Most ants (69%) successfully ignored the closer, poorer reward in favour of the further, better one. However, when both the far and the close rewards were of the same quality, most ants (83%) chose the closer feeder, indicating that the ants were indeed exercising self-control, as opposed to a fixation on an already known food source.
DOI: 10.6084/m9.figshare.5441569.v1
title: Raw Data from Individual ant workers show self-control

description: Often, the first option is not the best. Self-control can allow humans and animals to improve resource intake under such conditions. Self-control in animals is often investigated using intertemporal choice tasks—choosing a smaller reward immediately or a larger reward after a delay. However, intertemporal choice tasks may underestimate self-control, as test subjects may not fully understand the task. Vertebrates show much greater apparent self-control in more natural foraging contexts and spatial discounting tasks than in intertemporal choice tasks. However, little is still known about self-control in invertebrates. Here, we investigate self-control in the black garden ant <i>Lasius niger</i>. We confront individual workers with a spatial discounting task, offering high-quality reward far from the nest and poor-quality reward closer to the nest. Most ants (69%) successfully ignored the closer, poorer reward in favour of the further, better one. However, when both the far and the close rewards were of the same quality, most ants (83%) chose the closer feeder, indicating that the ants were indeed exercising self-control, as opposed to a fixation on an already known food source.
DOI: 10.6084/m9.figshare.5463406
title: Table S1 from Bluetongue virus spread in Europe is a consequence of climatic, landscape and vertebrate host factors as revealed by phylogeographic inference.

description: Spatio-temporal patterns of the spread of infectious diseases are commonly driven by environmental and ecological factors. This is particularly true for vector-borne diseases because vector populations can be strongly affected by host distribution as well as by climatic and landscape variables. Here, we aim to identify environmental drivers for bluetongue virus (BTV), the causative agent of a major vector-borne disease of ruminants that has emerged multiple times in Europe in recent decades. In order to determine the importance of climatic, landscape and host-related factors affecting BTV diffusion across Europe, we fitted different phylogeographic models to a dataset of 113 time-stamped and geo-referenced BTV genomes, representing multiple strains and serotypes. Diffusion models using continuous space revealed that terrestrial habitat below 300 m altitude, wind direction and higher livestock densities were associated with faster BTV movement. Results of discrete phylogeographic analysis involving generalized linear models broadly supported these findings, but varied considerably with the level of spatial partitioning. Contrary to common perception, we found no evidence for average temperature having a positive effect on BTV diffusion, though both methodological and biological reasons could be responsible for this result. Our study provides important insights into the drivers of BTV transmission at the landscape scale that could inform predictive models of viral spread and have implications for designing control strategies.