cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.mn9ssa
title: Occurrence Download

description: A dataset containing 739 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Biodiversidad asociada a la declaración del Área Protegida en el Pueblo Indígena EPERARA SIAPIDARA, Resguardo Calle Santa Rosa, Timbiquí (Cauca)"
 ]
}

 The dataset includes 739 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0194961-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w75sk7
title: Occurrence Download

description: A dataset listing the 26025 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada"
 ]
 },
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Plantae"
 ]
}

 The dataset's 26025 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126869-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tadh6o
title: Occurrence Download

description: A dataset containing 136697 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Matricaria chamomilla L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 136697 records from 508 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011574-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5n23sd
title: Occurrence Download

description: A dataset containing 6863 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Malvastrum coromandelianum (L.) Garcke",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6863 records from 266 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008800-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5nuy4q
title: Occurrence Download

description: A dataset containing 800 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.2_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Megachilidae",
 "Year 2001-2022"
 ]
}

 The dataset includes 800 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008834-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5pfyya
title: Occurrence Download

description: A dataset containing 6308 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bothrops atrox (Linnaeus, 1758)"
 ]
}

 The dataset includes 6308 records from 148 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008802-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5pgfrc
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-79.18014 0.00245,-76.2117 0.00245,-76.2117 8.53203,-79.18014 8.53203,-79.18014 0.00245))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Urera baccifera (L.) Gaudich."
 ]
}

 The dataset includes 82 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008989-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5q3xfg
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Greece",
 "GadmGid is GRC.7.2_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Salvia fruticosa Mill."
 ]
}

 The dataset includes 61 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0185271-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5queyu
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dorcus rubrofemoratus rubrofemoratus",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184790-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5reuk4
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pylargosceles steganioides (Butler, 1878)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 95 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0185036-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5st9ps
title: Occurrence Download

description: A dataset containing 2537 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Alternanthera brasiliana (L.) Kuntze",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2537 records from 201 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008528-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12632963
title: Metagenomics education in a modular CURE format positively affects students' scientific discovery perception and data analytical skills

description: The targeted metagenomics study performed by Pollock et al. (Pollock 2018) was part of the Global Coral Microbiome Project (Vega Thurber Lab 2014).  Since the original publication of Pollock et al. (Pollock 2018) was written for a highly specialized academic public, we provided Bsc. students with a short introduction of the paper and guided them through the metadata table stored in the gcmp16S_map_r25.txt file under the GCMP Australia sequence data, OTU tables, and metadata folder (https://doi.org/10.6084/m9.figshare.c.3855466.v2).

In order to process the fastq-files and obtain OTU tables, a custom-made pipeline on a Galaxy instance (Galaxy Community) was used. This pipeline contained data analytical tools obtained from the Naturalis Biodiversity Center GitHub environment (https://github.com/naturalis). In order to align with the newest Galaxy best practices, we updated the tools and links to the original as well as the updated GitHub and toolshed versions are included in the references list.

The names of the original raw fastq-files contain many dots which can hamper file-type recognition during downstream analyses in Galaxy. Therefore, prior to distributing the fastq-files to the students, these names were renamed using the ManageZIP tool (The BLFS Development Team 1999-2023). Dots were replaced with underscores, with an exception made for the last 2 file type extension dots. For example, the file name E1.2.Tur.pelt.1.20140814.M_S71_L001_R1_001.fastq.gz was changed into E1_2_Tur_pelt_1_20140814_M_S71_L001_R1_001_1.fastq.gz. Similarly, the filenames in the metadata table were adjusted accordingly. The total collection of renamed file names is available through this zenodo repository as wel as the accompanying metadata file.
description: De R markdown file to be used with the data has also been uploaded with a test workspace
DOI: 10.5281/zenodo.12632964
title: Metagenomics education in a modular CURE format positively affects students' scientific discovery perception and data analytical skills

description: The targeted metagenomics study performed by Pollock et al. (Pollock 2018) was part of the Global Coral Microbiome Project (Vega Thurber Lab 2014).  Since the original publication of Pollock et al. (Pollock 2018) was written for a highly specialized academic public, we provided Bsc. students with a short introduction of the paper and guided them through the metadata table stored in the gcmp16S_map_r25.txt file under the GCMP Australia sequence data, OTU tables, and metadata folder (https://doi.org/10.6084/m9.figshare.c.3855466.v2).

In order to process the fastq-files and obtain OTU tables, a custom-made pipeline on a Galaxy instance (Galaxy Community) was used. This pipeline contained data analytical tools obtained from the Naturalis Biodiversity Center GitHub environment (https://github.com/naturalis). In order to align with the newest Galaxy best practices, we updated the tools and links to the original as well as the updated GitHub and toolshed versions are included in the references list.

The names of the original raw fastq-files contain many dots which can hamper file-type recognition during downstream analyses in Galaxy. Therefore, prior to distributing the fastq-files to the students, these names were renamed using the ManageZIP tool (The BLFS Development Team 1999-2023). Dots were replaced with underscores, with an exception made for the last 2 file type extension dots. For example, the file name E1.2.Tur.pelt.1.20140814.M_S71_L001_R1_001.fastq.gz was changed into E1_2_Tur_pelt_1_20140814_M_S71_L001_R1_001_1.fastq.gz. Similarly, the filenames in the metadata table were adjusted accordingly. The total collection of renamed file names is available through this zenodo repository as wel as the accompanying metadata file.
DOI: 10.5281/zenodo.12635429
title: Metagenomics education in a modular CURE format positively affects students' scientific discovery perception and data analytical skills

description: The targeted metagenomics study performed by Pollock et al. (Pollock 2018) was part of the Global Coral Microbiome Project (Vega Thurber Lab 2014).  Since the original publication of Pollock et al. (Pollock 2018) was written for a highly specialized academic public, we provided Bsc. students with a short introduction of the paper and guided them through the metadata table stored in the gcmp16S_map_r25.txt file under the GCMP Australia sequence data, OTU tables, and metadata folder (https://doi.org/10.6084/m9.figshare.c.3855466.v2).

In order to process the fastq-files and obtain OTU tables, a custom-made pipeline on a Galaxy instance (Galaxy Community) was used. This pipeline contained data analytical tools obtained from the Naturalis Biodiversity Center GitHub environment (https://github.com/naturalis). In order to align with the newest Galaxy best practices, we updated the tools and links to the original as well as the updated GitHub and toolshed versions are included in the references list.

The names of the original raw fastq-files contain many dots which can hamper file-type recognition during downstream analyses in Galaxy. Therefore, prior to distributing the fastq-files to the students, these names were renamed using the ManageZIP tool (The BLFS Development Team 1999-2023). Dots were replaced with underscores, with an exception made for the last 2 file type extension dots. For example, the file name E1.2.Tur.pelt.1.20140814.M_S71_L001_R1_001.fastq.gz was changed into E1_2_Tur_pelt_1_20140814_M_S71_L001_R1_001_1.fastq.gz. Similarly, the filenames in the metadata table were adjusted accordingly. The total collection of renamed file names is available through this zenodo repository as wel as the accompanying metadata file.
description: De R markdown file to be used with the data has also been uploaded
DOI: 10.5281/zenodo.12723661
title: Metagenomics education in a modular CURE format positively affects students' scientific discovery perception and data analytical skills

description: The targeted metagenomics study performed by Pollock et al. (Pollock 2018) was part of the Global Coral Microbiome Project (Vega Thurber Lab 2014).  Since the original publication of Pollock et al. (Pollock 2018) was written for a highly specialized academic public, we provided Bsc. students with a short introduction of the paper and guided them through the metadata table stored in the gcmp16S_map_r25.txt file under the GCMP Australia sequence data, OTU tables, and metadata folder (https://doi.org/10.6084/m9.figshare.c.3855466.v2).

In order to process the fastq-files and obtain OTU tables, a custom-made pipeline on a Galaxy instance (Galaxy Community) was used. This pipeline contained data analytical tools obtained from the Naturalis Biodiversity Center GitHub environment (https://github.com/naturalis). In order to align with the newest Galaxy best practices, we updated the tools and links to the original as well as the updated GitHub and toolshed versions are included in the references list.

The names of the original raw fastq-files contain many dots which can hamper file-type recognition during downstream analyses in Galaxy. Therefore, prior to distributing the fastq-files to the students, these names were renamed using the ManageZIP tool (The BLFS Development Team 1999-2023). Dots were replaced with underscores, with an exception made for the last 2 file type extension dots. For example, the file name E1.2.Tur.pelt.1.20140814.M_S71_L001_R1_001.fastq.gz was changed into E1_2_Tur_pelt_1_20140814_M_S71_L001_R1_001_1.fastq.gz. Similarly, the filenames in the metadata table were adjusted accordingly. The total collection of renamed file names is available through this zenodo repository as wel as the accompanying metadata file.
description: De R markdown file to be used with the data has also been uploaded with a test workspace
DOI: 10.15468/dl.5swns9
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-5.61386 35.99911,-5.60535 35.99911,-5.60535 36.00599,-5.61386 36.00599,-5.61386 35.99911))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Magnoliopsida"
 ]
}

 The dataset includes 26 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0113128-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5tcs63
title: Occurrence Download

description: A dataset containing 5290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2022-08-16",
 "EventDate is less than or equal to 2022-09-15",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 5290 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009045-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5v8zvu
title: Occurrence Download

description: A dataset containing 14838 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calamagrostis villosa (Chaix) J.F.Gmel."
 ]
}

 The dataset includes 14838 records from 143 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0113016-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5vn83k
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neotamias durangae (J.A.Allen, 1903)"
 ]
}

 The dataset includes 29 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0192731-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5w8mdq
title: Occurrence Download

description: A dataset containing 206 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Favia gravida Verrill, 1868"
 ]
}

 The dataset includes 206 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0113296-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/36b088db-cc3d-45c8-9b9e-8cbc614b74aa
title: Supplementary data for the paper 'Immersive Insights: Evaluating Augmented Reality Interfaces for Pedestrians in a CAVE-Based Experiment'

description: Introduction: Augmented reality (AR) has been increasingly studied in transportation, particularly for drivers and pedestrians interacting with automated vehicles (AVs). Previous research evaluated AR interfaces using online video-based questionnaires but lacked human-subject research in immersive environments. This study examined if prior online evaluations of nine AR interfaces could be replicated in an immersive virtual environment and if AR design effectiveness depends on pedestrian attention allocation. Methods: Thirty participants completed 120 trials in a CAVE-based simulator with yielding and non-yielding AVs, rating interface intuitiveness and crossing the road when feeling safe. To emulate visual distraction, participants had to look into an attention-attractor circle that disappeared 1 s after the interface appeared. Results: The results showed that intuitiveness ratings from the current CAVE-based study and the previous online study correlated strongly (r ≈ 0.90). Head-locked interfaces and familiar designs (augmented traffic lights, zebra crossing) yielded higher intuitiveness scores and quicker crossing initiations than vehicle-locked interfaces. Vehicle-locked interfaces were less effective when the attention-attractor was on the environment’s opposite side, while head-locked interfaces were relatively unaffected by attention-attractor position. Discussion: In conclusion, this ‘AR in VR’ study shows strong congruence between intuitiveness ratings in a CAVE-based study and online research, and demonstrates the importance of interface placement in relation to user gaze direction.
DOI: 10.15468/dl.5xc2cg
title: Occurrence Download

description: A dataset containing 3166 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Solanum seaforthianum Andrews",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3166 records from 161 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008922-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5xr9tt
title: Occurrence Download

description: A dataset containing 304 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Balaustium murorum (Hermann, 1804)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 304 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0185124-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/36b088db-cc3d-45c8-9b9e-8cbc614b74aa.v2
title: Supplementary data for the paper 'Immersive Insights: Evaluating Augmented Reality Interfaces for Pedestrians in a CAVE-Based Experiment'

description: Introduction: Augmented reality (AR) has been increasingly studied in transportation, particularly for drivers and pedestrians interacting with automated vehicles (AVs). Previous research evaluated AR interfaces using online video-based questionnaires but lacked human-subject research in immersive environments. This study examined if prior online evaluations of nine AR interfaces could be replicated in an immersive virtual environment and if AR design effectiveness depends on pedestrian attention allocation. Methods: Thirty participants completed 120 trials in a CAVE-based simulator with yielding and non-yielding AVs, rating interface intuitiveness and crossing the road when feeling safe. To emulate visual distraction, participants had to look into an attention-attractor circle that disappeared 1 s after the interface appeared. Results: The results showed that intuitiveness ratings from the current CAVE-based study and the previous online study correlated strongly (r ≈ 0.90). Head-locked interfaces and familiar designs (augmented traffic lights, zebra crossing) yielded higher intuitiveness scores and quicker crossing initiations than vehicle-locked interfaces. Vehicle-locked interfaces were less effective when the attention-attractor was on the environment’s opposite side, while head-locked interfaces were relatively unaffected by attention-attractor position. Discussion: In conclusion, this ‘AR in VR’ study shows strong congruence between intuitiveness ratings in a CAVE-based study and online research, and demonstrates the importance of interface placement in relation to user gaze direction.
DOI: 10.15468/dl.5xx3ck
title: Occurrence Download

description: A dataset containing 364 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Toxicodendron rydbergii (Small ex Rydb.) Greene",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 364 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161266-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5y9w4n
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calisto zangis Fabricius, 1775"
 ]
}

 The dataset includes 60 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008604-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5zuy8r
title: Occurrence Download

description: A dataset containing 286 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Specimen, Living Specimen)",
 "Geometry POLYGON((-180 9,180 9,180 33,-180 33,-180 9))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Passiflora palmeri Rose"
 ]
}

 The dataset includes 286 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008679-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.