cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.mb763/18
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 2804

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/19
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 3110

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/20
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 3304

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/21
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 3305

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/22
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 3405

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/23
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 3407

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/24
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 3603

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/25
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 3707

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/26
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 3708

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/27
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 3806

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/28
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 3906

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/29
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 4103

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/30
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 4303

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/31
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 4404

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/32
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 4405

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/33
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 4508

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/34
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 4510

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/35
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 4609

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/36
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 4706

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/37
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 5003

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/38
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 5004

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/39
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 5605

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/40
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 5711

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/41
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 5812

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/42
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 5813

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/43
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 6104

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/44
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 6105

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/45
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 6405

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/46
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 6406

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/47
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 6505

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/48
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 6608

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/49
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 6805

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.1538t/1
title: FEpapSA1

description: Appendix S1
DOI: 10.5061/dryad.2hv7d.2
title: Data from: The majority of transcripts in the squid nervous system are extensively recoded by A-to-I RNA editing
DOI: 10.5061/dryad.2hv7d.2/1.2
title: Supplementary File 1

description: A text file in a fasta format with the constructed squid coding sequences.
DOI: 10.5061/dryad.d0k6q/1
title: Supplemental_Data_1

description: Measurement data (in mm) for all specimens used in regression and statistical analyses
DOI: 10.5061/dryad.mb763/50
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 6901

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/51
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 7005

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/52
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 7206

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/53
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 7707

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/54
title: Raw mass spec files from differentially expressed proteins of Sydney rock oysters_spot 7803

description: Tryptic peptides were analysed by reversed phase nanoflow liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an QExactive mass spectrometer (Thermo scientific, CA, USA).   Samples represent differentially expressed proteins from two populations of Sydney rock oyster at ambient and elevated CO2 exposure.
DOI: 10.5061/dryad.mb763/55
title: Normalised spot abundances

description: Normalised spot abundances for all protein spots across all treatments in the study.
DOI: 10.5061/dryad.1538t/2
title: FEpapSA2

description: Appendix S2
DOI: 10.5061/dryad.1538t/3
title: FEpapSA3

description: Appendix S3
DOI: 10.5061/dryad.2307m/1
title: Convex hull 3D files
DOI: 10.5061/dryad.2hv7d.1
title: Data from: The majority of transcripts in the squid nervous system are extensively recoded by A-to-I RNA editing
DOI: 10.5061/dryad.2hv7d.2/3.2
title: Supplementary File 2

description: A spreadsheet with all the A-to-G modification sites detected in the coding regions of the squid, along with their number of supporting reads in all the tissues studied.
DOI: 10.5061/dryad.80rb8/1
title: Authors' Note for Agić et al. JoP

description: Note on the new age constraints on the Ruyang Formation, published in Lan et al. 2014 (Precambrian Research) after the submission and acceptance of this manuscript.
DOI: 10.5061/dryad.cr24d/1
title: Cizauskas et al 2015 Hormones Parasites Data

description: These data include parasite, immune, and hormone data for wild plains zebra (Equus quagga) and springbok (Antidorcas marsupialis) in Etosha National Park, Namibia.
DOI: 10.5061/dryad.hf63h/1
title: Cox1 Asmit region sequences

description: This file covers all the cox1 (Asmit region) haplotypes for seven Bulinus species (B. truncatus, B. tropicus, B. globosus, B. umbilicatus, B. senegalensis, B. camerunensis and B. forskalii) collected from three African counties (Cameroon, Senegal and Egypt). They were sequenced using an ABI Prism BigDye® Terminator v1.1 Cycle Sequencing Ready Reaction Kit (PE, Applied Biosystems), and were aligned using ClustalX in Mega6.
DOI: 10.5061/dryad.nf0kk/1
title: swissBDM

description: This file contains the six measures of plant diversity for each of the 381 study plots, each of 1 km2 size, as obtained from the Swiss biodiversity monitoring indicator "species richness in landscapes" (www.biodiversitymonitoring.ch/en/data/indicators/z/z7.html). Additionally, the file contains the estimated atmospheric N deposition for each plot as well as the different covariates as obtained from [1]. The content of the columns is as follows: PLOT_ID: Unique identifier for each 1 km2 plot. TOTAL_SR: Number of recorded species. OLIGO_SR: Number of species typically found on nutrient-poor soils, i.e. oligotrophic species with N-values of one and two [2]. AGRI_SR	: Number of target species for which Swiss agriculture has particular responsibility of conservation [3]. UNIQUE: Community uniqueness calculated as the average Simpson dissimilarity index [4] of species composition for the particular study plot paired with each other plot. FD: Functional diversity. PD :Phylogenetic diversity. Ndep: Atmospheric Nitrogen deposition (kg ha-1 yr-1). E.avg: Altitude (m.a.s.l.). L.agrilow: Lowland agricultural area (ha). L.tree: Open woody formation area (ha). CALC: Calcareous substrate (%). TR.ran: Range of temperature variation Jul.-Jan. (°C).
creek.sd: Standard deviation of creek length (m). REFERENCES: [1] Wohlgemuth, T., Nobis, M.P., Kienast, F. & Plattner, M. 2008 Modelling vascular plant diversity at the landscape scale using systematic samples. J. Biogeogr. 35, 1226-1240. (doi:j.1365-2699.2008.01884.x). [2] Landolt, E., Bäumler, B., Erhardt, A., Hegg, O., Klötzli, F., Lämmler, W., Nobis, M., Rudmann-Maurer, K., Schweingruber, F. & Theurillat, J. 2010 Flora Indicativa, Ecological Indicator Values and Biological Attributes of the Flora of Switzerland and the Alps. Bern, Haupt-Verlag; 382 p. [3] BAFU & BLW. 2008 Umweltziele Landwirtschaft. Hergeleitet aus bestehenden rechtlichen Grundlagen. Bern, Bundesamt für Umwelt; 221 p. [4] Koleff, P., Gaston, K.J. & Lennon, J.J. 2003 Measuring beta diversity for presence-absence data. J. Anim. Ecol. 72, 367-382. (doi:10.1046/J.1365-2656.2003.00710.x).
DOI: 10.5061/dryad.26dk2/27
title: FourierAnalysisModifiedModel_P_09780modifiedModel-binary06
DOI: 10.5061/dryad.26dk2/28
title: Black&white--KLEEC2926
DOI: 10.5061/dryad.f8p63/1
title: individualBasedSimModel_HeredityInbreeding_13Feb2015.r

description: simulation model (run this in R)
DOI: 10.5061/dryad.f8p63/2
title: concatenateIBDTracts_13Feb2015.r

description: This script concatenates IBD chromosome segments which are directly adjacent to each other (i.e., IBD segments with exactly zero base pairs between them). See the README file for the simulation model for further information.
DOI: 10.5061/dryad.hf63h/2
title: Cox1-Folmer region sequences

description: This file covers all the cox1 (Folmer region) haplotypes for seven Bulinus species (B. truncatus, B. tropicus, B. globosus, B. umbilicatus, B. senegalensis, B. camerunensis and B. forskalii) collected from three African counties (Cameroon, Senegal and Egypt). They were sequenced using an ABI Prism BigDye® Terminator v1.1 Cycle Sequencing Ready Reaction Kit (PE, Applied Biosystems), and were aligned using ClustalX in Mega6.
DOI: 10.5061/dryad.hf63h/3
title: 18S-sequences

description: This file covers all the 18S sequences for six Bulinus species (B. truncatus, B. tropicus, B. globosus, B. umbilicatus, B. senegalensis, and B. forskalii) collected from three African counties (Cameroon, Senegal and Egypt). They were sequenced using an ABI Prism BigDye® Terminator v1.1 Cycle Sequencing Ready Reaction Kit (PE, Applied Biosystems), and were aligned using ClustalX in Mega6.
DOI: 10.5061/dryad.hf63h/4
title: 28S-sequences

description: This file covers all the 28S sequences for six Bulinus species (B. truncatus, B. tropicus, B. globosus, B. umbilicatus, B. senegalensis, and B. forskalii) collected from three African counties (Cameroon, Senegal and Egypt). They were sequenced using an ABI Prism BigDye® Terminator v1.1 Cycle Sequencing Ready Reaction Kit (PE, Applied Biosystems), and were aligned using ClustalX in Mega6.
DOI: 10.5061/dryad.hg505/1
title: Panopeus experimental results

description: Results of long term (2 month) feeding experiment where individual diet was varied (amount of food and proportion that was mussel vs. algae) and then reproductive effort was measured.
DOI: 10.5061/dryad.hg505/2
title: Sampling data containing just large crabs used in analyses

description: Field sampling data.  Each row represents a separate oyster reef.
DOI: 10.5061/dryad.hg505/3
title: IndividCrabsSamplingForDryad

description: Data from field sampling.  Same data as in the field sampling file, however, each row here represents an individual crab rather than the average from each of the sampled reefs.