cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/qep-19f-geb
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/chz-jd1-s9r
title: Gibberula catenata (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gd2-cbr-3jn
title: Melongena corona (Gmelin, 1791)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pdk-q73-fjk
title: Mitrella ocellata (Gmelin, 1791)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gkc-y2l-2yr
title: Mazatlania fulgurata (R. A. Philippi, 1846)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wsk-d1p-bt2
title: Siphonaria concinna G. B. Sowerby I, 1823

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fkl-s9d-ttv
title: Trimusculus goesi (Hubendick, 1946)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lhf-ywh-bz5
title: Chondrina farinesii massotiana (Bourguignat, 1863)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xnt-5jh-j8q
title: Pupilla J. Fleming, 1828

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1wp-gza-k71
title: Syrnola cinctella A. Adams, 1860

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lqw-ytl-vcp
title: Ebala J. E. Gray, 1847

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2ns-wzn-1xm
title: Vexillum sanguisuga (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v5e-da0-yr5
title: Olivella volutella (Lamarck, 1811)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fr3-7tc-n1l
title: Tectus pyramis (Born, 1778)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ht6-a3z-ada
title: Turbonilla Risso, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fkr-aa5-4ev
title: Mitra Lamarck, 1798

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8w0-k7a-l6z
title: Turris Batsch, 1789

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dxw-fa2-t8s
title: Gibberula pulchella (Kiener, 1834)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sj3-a1y-ztz
title: Clausilia rugosa (Draparnaud, 1801)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vvr-18f-5q3
title: Volvarina monilis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0de-hen-cn6
title: Engina zonalis (Lamarck, 1822)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qtg-pvv-cxq
title: Conus arenatus Hwass, 1792

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h84-a4c-mh4
title: Clausilia Draparnaud, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/882-g13-wzv
title: Retusa truncatula (Bruguière, 1792)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/js8-5dd-gpm
title: Vallonia costata (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pfg-xlq-nfw
title: Oliva sayana Ravenel, 1834

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zz2-74l-bf7
title: Oliva irisans Lamarck, 1811

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3ld-a0g-epw
title: Siphonaria diemenensis Quoy & Gaimard, 1833

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s6a-hva-8vs
title: Macrogastra ventricosa (Draparnaud, 1801)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ett-k05-ty6
title: Carinigera albicosta (O. Boettger, 1877)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l1z-8a3-1hb
title: Architectonica laevigata (Lamarck, 1816)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2r0-3lx-a0y
title: Steironepion moniliferum (G. B. Sowerby I, 1844)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fqj-01b-pwq
title: Antillophos grateloupianus (Petit de la Saussaye, 1853)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/22m-5lb-w0d
title: Leptaxis groviana groviana (A. Férussac, 1832)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/46e-x35-lm4
title: Cantareus apertus (Born, 1778)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q7a-dah-m4j
title: Pleurobema cordatum (Rafinesque, 1820)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5vx-ecl-0fx
title: Septifer bilocularis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s3a-28j-5q5
title: Tanychlamys amboinensis (E. von Martens, 1864)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2ak-60x-7t4
title: Pterelectroma physoides (Lamarck, 1819)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/908-e4e-cjx
title: Allognathus Pilsbry, 1888

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7yl-ps6-qy3
title: Lima lima (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1y1-psh-3v4
title: Discula polymorpha depressiuscula (R. T. Lowe, 1831)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8ev-6w0-6q9
title: Calocochlea pulcherrima (G. B. Sowerby I, 1841)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x9k-3fz-5qt
title: Cerion regina Pilsbry & Vanatta, 1895

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sym-rsa-1mm
title: Trochoidea elegans (Gmelin, 1791)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y6q-a9t-9hp
title: Euglandina insignis (L. Pfeiffer, 1855)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5mx-j9h-jpe
title: Monacha syriaca (Ehrenberg, 1831)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vbd-gsv-y7f
title: Ctenoides ales (H. J. Finlay, 1927)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d9k-mfx-3ea
title: Conus chaldaeus (Röding, 1798)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/srd-tpq-3jq
title: Metafruticicola pellita (A. Férussac, 1832)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d27-pxq-nat
title: Hyotissa hyotis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bnr-n47-9ex
title: Xerosecta Monterosato, 1892

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wh0-l3j-fhb
title: Arcopsis adamsi (Dall, 1886)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yy4-jgx-la3
title: Nucula sulcata Bronn, 1831

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3lc-zyx-l06
title: Spirula spirula (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gd7-ctq-s7g
title: Columna columna (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b4v-taj-l3l
title: Conus ebraeus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jme-9a5-ycz
title: Trochoidea pyramidata (Draparnaud, 1805)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m60-dhr-xm5
title: Cylindrus obtusus (Draparnaud, 1805)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sdc-3pw-l4w
title: Gonyodiscus rotundatus (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0vm-4my-dxq
title: Euhadra herklotsi (E. von Martens, 1861)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7zz-q0q-11g
title: Conus loroisii Kiener, 1846

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ac7-e8l-z5x
title: Monacha cartusiana (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2pl-8by-j8z
title: Lampsilis straminea (Conrad, 1834)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7lm-0px-qpq
title: Aegopinella nitidula (Draparnaud, 1805)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gv3-6d8-5ws
title: Diodora dysoni (Reeve, 1850)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a08-6fl-z75
title: Septifer bilocularis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/epg-x7q-hn1
title: Placuna placenta (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/11a-162-wtp
title: Helminthoglypta arrosa (W. G. Binney, 1858)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0ax-s3z-76z
title: Lucerna lamarckii (A. Férussac, 1821)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w3x-ypg-6c5
title: Paralaoma regia A. W. B. Powell, 1948

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1w5-b5e-saq
title: Argonauta argo Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ann-39b-b8q
title: Pseudopineria viequensis (L. Pfeiffer, 1856)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8af-91q-0kh
title: Hemicycla bidentalis bidentalis (Lamarck, 1822)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tnw-sbr-c6k
title: Helicarion A. Férussac, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wjw-q93-e5m
title: Euconulus fulvus (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wk7-0l5-nx3
title: Conus fuscoflavus Röckel, Rolán & Monteiro, 1980

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.15168070
title: DATASET for D2.2 STECCI DRF Lipfert & Kucera matrix

description: As a part of D2.2 The spatial-temporal distribution data base and modelling of selected air pollution impact within the selected STECCI case study sites, Lipfert and Kucera Dose Response Functions (DRFs) were jointly applied to predict limestone surface loss across 12 environmentally diverse sites in Europe. A STECCI-specific DRF matrix was developed, accompanied by a synthetic table presenting the predicted rate of stone deterioration in µm/year for each stecci site.
DOI: 10.3535/zmd-k0p-t0j
title: Trochulus hispidus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.15168069
title: DATASET for D2.2 STECCI DRF Lipfert & Kucera matrix

description: As a part of D2.2 The spatial-temporal distribution data base and modelling of selected air pollution impact within the selected STECCI case study sites, Lipfert and Kucera Dose Response Functions (DRFs) were jointly applied to predict limestone surface loss across 12 environmentally diverse sites in Europe. A STECCI-specific DRF matrix was developed, accompanied by a synthetic table presenting the predicted rate of stone deterioration in µm/year for each stecci site.
DOI: 10.3535/4wq-9ht-q76
title: Poecilozonites circumfirmatus (Redfield, 1853)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r22-00y-547
title: Diodora J. E. Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yp1-a63-fgc
title: Ferussaciidae Bourguignat, 1883

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/glj-6c0-b4p
title: Vitrea contracta (Westerlund, 1871)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ncl-3ql-86r
title: Monacha messenica (Blanc, 1879)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v55-anp-jfd
title: Sphincterochila cariosula (Michaud, 1833)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/802-7qj-1nv
title: Vitrea subrimata (Reinhardt, 1871)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vaj-79l-78v
title: Codakia punctata (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qlt-kbw-lr3
title: Arca zebra Swainson, 1833

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rs6-xj3-dbr
title: Cepaea hortensis (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2al-by2-dw9
title: Cantareus apertus (Born, 1778)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wsd-9yg-9x9
title: Anadara bataviensis (E. Lamy, 1907)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4lw-03a-wgf
title: Glycymeris stellata (Bruguière, 1789)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e20-l21-cga
title: Therasia traversi (E. A. Smith, 1884)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kxw-rx8-lls
title: Conus catus Hwass, 1792

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g76-kqe-6ce
title: Rhombosepion orbignyanum (A. Férussac, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x9v-wnc-t1t
title: Xerocrassa cretica (L. Pfeiffer, 1841)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lxa-htr-mer
title: Gonospira palanga (Lesson, 1830)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pd3-4yn-adf
title: Conus daucus Hwass, 1792

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2b4-plr-w6g
title: Perpolita petronella (L. Pfeiffer, 1853)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yp0-8sa-a7b
title: Conus emaciatus Reeve, 1849

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xq8-gs8-jxa
title: Aegopinella pura (Alder, 1830)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ywn-2ss-fbf
title: Conus capitaneus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8zk-qrv-xs8
title: Cernuella virgata (Da Costa, 1778)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/crr-tck-r59
title: Zachrysia auricoma (A. Férussac, 1821)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zkl-vzn-x3n
title: Limaria hians (Gmelin, 1791)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3el-6v8-dfl
title: Anadara oceanica (Lesson, 1831)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ngh-myk-2ar
title: Amphidromus sinistralis (Reeve, 1849)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4hy-psk-qxv
title: Euconulus fulvus (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/84t-8n6-fvz
title: Trochulus hispidus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2h7-0nr-4v7
title: Xerocrassa cretica (L. Pfeiffer, 1841)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f2t-h9r-kty
title: Allognathus Pilsbry, 1888

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bnz-e88-dzr
title: Tegillarca granosa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8t6-xpy-rrq
title: Crassostrea rhizophorae (Guilding, 1828)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s5k-nhb-q42
title: Pecten jacobaeus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.16849846
title: CancerMine

description: This describes the output files for the CancerMine project. These files are loaded directly by the CancerMine viewer. The code for this viewer is available in the CancerMine Github repo if you want to run it independently. Each file is a tab-delimited file with a header, no comments and no quoting.


You likely want cancermine_collated.tsv if you just want the list of cancer gene roles. If you want the supporting sentences, look at cancermine_sentences.tsv. You can use the matching_id column to connect the two files. If you want to dig further and are okay with a higher false positive rate, look at cancermine_unfiltered.tsv.


cancermine_collated.tsv: This contains the cancer gene roles with citation counts supporting them. It contains the normalized cancer and gene names along with IDs for HUGO, Entrez Gene and the Disease Ontology.


cancermine_sentences.tsv: This contains the supporting sentences for the cancer gene roles in the collated file. Each row is a single supporting sentence for one cancer gene role. This file contains information on the source publication (e.g. journal, publication date, etc), the actual sentence and the cancer gene role extracted.


cancermine_unfiltered.tsv: This is the raw output of the applyModelsToSentences.py script across all of PubMed, Pubmed Central Open Access and PubMed Central Author Manuscript Collection. It contains every predicted relation with a prediction score above 0.5. So this may contain many false positives. Each row contain information on the publication (e.g. journal, publication date, etc) along with the sentence and the specific cancer gene role extracted (with HUGO, Entrez Gene and Disease Ontology IDs). This file is further processed to create the other two.
DOI: 10.3535/ax9-00p-k71
title: Cosa laevicostata A. W. B. Powell, 1933

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bqy-j33-q52
title: Anadara trapezia (Deshayes, 1839)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/95j-5jx-xj7
title: Mytilidae Rafinesque, 1815

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r1b-y5c-2xb
title: Ostreidae Rafinesque, 1815

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.1156241
title: CancerMine

description: This describes the output files for the CancerMine project. These files are loaded directly by the CancerMine viewer. The code for this viewer is available in the CancerMine Github repo if you want to run it independently. Each file is a tab-delimited file with a header, no comments and no quoting.


You likely want cancermine_collated.tsv if you just want the list of cancer gene roles. If you want the supporting sentences, look at cancermine_sentences.tsv. You can use the matching_id column to connect the two files. If you want to dig further and are okay with a higher false positive rate, look at cancermine_unfiltered.tsv.


cancermine_collated.tsv: This contains the cancer gene roles with citation counts supporting them. It contains the normalized cancer and gene names along with IDs for HUGO, Entrez Gene and the Disease Ontology.


cancermine_sentences.tsv: This contains the supporting sentences for the cancer gene roles in the collated file. Each row is a single supporting sentence for one cancer gene role. This file contains information on the source publication (e.g. journal, publication date, etc), the actual sentence and the cancer gene role extracted.


cancermine_unfiltered.tsv: This is the raw output of the applyModelsToSentences.py script across all of PubMed, Pubmed Central Open Access and PubMed Central Author Manuscript Collection. It contains every predicted relation with a prediction score above 0.5. So this may contain many false positives. Each row contain information on the publication (e.g. journal, publication date, etc) along with the sentence and the specific cancer gene role extracted (with HUGO, Entrez Gene and Disease Ontology IDs). This file is further processed to create the other two.
DOI: 10.3535/70j-vn8-feh
title: Lindholmiola barbata (A. Férussac, 1832)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f3v-hm2-blg
title: Kaliella microconus (Mousson, 1865)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.