cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13651502.v3
title: Feature Enriched Dataset

description: Author name ambiguity problem stems from the fact that many individuals share identical names in the real world. It is a non-trivial problem, commonly faced by digital libraries who index and retrieve scholarly articles written by distinct authors, on demand. The problem occurs when multiple authors share a common name or when multiple name variations of an author appear in the publication records, as, digital libraries do not provide an efficient way to accurately identify publications of an author. Furthermore, lack of complete meta data information of an author and publication hinders the development of a generic algorithm that can solve the under discussing problem. Many data collections exists which are used to develop and test author name ambiguity problem, however, majority of them lack basic author as well as publication related meta data, are incomplete, inconsistent and often biased as they are curated keeping view certain scenario or feature. To the best of our knowledge, there exists no free data collection which is enriched with useful features and holds the potential to comprehensively develop and evaluate author name ambiguity resolving techniques. Considering this, we have prepared a dataset which is based on 14 ambiguous author name blocks/groups, where each block is composed of distinct authors sharing common name or multiple name variations. The data set covers more than eleven authors as well as publication related features, containing 7886 publication records in total, belonging to 137 distinct authors. Raw data set is extracted from multiple web sources, which is annotated and confirmed manually. After pre-processing the raw data, we have employed a user study-based evaluation method along with Cohen's Kappa Coefficient with 100 % agreement. We believe that this dataset can provide the research community an opportunity to work with a diverse and unbiased, useful feature enriched dataset to develop and test author name disambiguation related techniques, which can be generic with better performance when employed in real world scenarios.
DOI: 10.6084/m9.figshare.13651502.v2
title: Feature Enriched Dataset to Develop and Test Author Name Ambiguity Solutions

description: Author name ambiguity problem stems from the fact that many individuals share identical names in the real world. It is a non-trivial problem, commonly faced by digital libraries who index and retrieve scholarly articles written by distinct authors, on demand. The problem occurs when multiple authors share a common name or when multiple name variations of an author appear in the publication records, as, digital libraries do not provide an efficient way to accurately identify publications of an author. Furthermore, lack of complete meta data information of an author and publication hinders the development of a generic algorithm that can solve the under discussing problem. Many data collections exists which are used to develop and test author name ambiguity problem, however, majority of them lack basic author as well as publication related meta data, are incomplete, inconsistent and often biased as they are curated keeping view certain scenario or feature. To the best of our knowledge, there exists no free data collection which is enriched with useful features and holds the potential to comprehensively develop and evaluate author name ambiguity resolving techniques. Considering this, we have prepared a dataset which is based on 14 ambiguous author name blocks/groups, where each block is composed of distinct authors sharing common name or multiple name variations. The data set covers more than eleven authors as well as publication related features, containing 7886 publication records in total, belonging to 137 distinct authors. Raw data set is extracted from multiple web sources, which is annotated and confirmed manually. After pre-processing the raw data, we have employed a user study-based evaluation method along with Cohen's Kappa Coefficient with 100 % agreement. We believe that this dataset can provide the research community an opportunity to work with a diverse and unbiased, useful feature enriched dataset to develop and test author name disambiguation related techniques, which can be generic with better performance when employed in real world scenarios.
DOI: 10.6084/m9.figshare.13436216.v1
title: Ruivães Ferns 14:50 - Hyperspectral Radiance Image

description: Hyperspectral radiance data. The zipped file contains an unaveraged hyperspectral radiance image in Matlab MAT format, size 1024 × 1344 × 33, and spectral radiance in W m<sup>−2</sup> sr<sup>−1</sup> nm<sup>−1</sup>. The image is one of a pair of images acquired at different times. The zipped file also contains a BMP colour image, rendered from the radiance image, and an information document, which includes geographic location. The separate JPG image of the scene is for illustration only. Padding artefacts may be visible at the image edges. The hyperspectral images were acquired by Sérgio Nascimento, Kinjiro Amano, and David Foster from the Minho region of Portugal in 2002 and 2003.
DOI: 10.6084/m9.figshare.13436201.v1
title: Ruivães Ferns 14:40 - Hyperspectral Radiance Image

description: Hyperspectral radiance data. The zipped file contains an unaveraged hyperspectral radiance image in Matlab MAT format, size 1024 × 1344 × 33, and spectral radiance in W m<sup>−2</sup> sr<sup>−1</sup> nm<sup>−1</sup>. The image is one of a pair of images acquired at different times. The zipped file also contains a BMP colour image, rendered from the radiance image, and an information document, which includes geographic location. The separate JPG image of the scene is for illustration only. Padding artefacts may be visible at the image edges. The hyperspectral images were acquired by Sérgio Nascimento, Kinjiro Amano, and David Foster from the Minho region of Portugal in 2002 and 2003.
DOI: 10.5281/zenodo.4539907
title: Dataset for "Domain-Specific Fixes for Flaky Tests with Wrong Assumptions on Underdetermined Specifications"

description: Dataset for "Domain-Specific Fixes for Flaky Tests with Wrong Assumptions on Underdetermined Specifications". It contains relevant information for Table 1 and Table 2 in the paper.
DOI: 10.5281/zenodo.4539906
title: Dataset for "Domain-Specific Fixes for Flaky Tests with Wrong Assumptions on Underdetermined Specifications"

description: Dataset for "Domain-Specific Fixes for Flaky Tests with Wrong Assumptions on Underdetermined Specifications". It contains relevant information for Table 1 and Table 2 in the paper.
DOI: 10.5281/zenodo.4539916
title: iapp_wiki_qa_squad

description: Open Thai Wikipedia QA Dataset made by iApp Technology<br> Thai Wikipedia Question Answering Dataset. 1,961 Documents 9,170 Questions
DOI: 10.5281/zenodo.4539915
title: iapp_wiki_qa_squad

description: Open Thai Wikipedia QA Dataset made by iApp Technology<br> Thai Wikipedia Question Answering Dataset. 1,961 Documents 9,170 Questions
DOI: 10.5281/zenodo.4114419
title: Supporting datasets

description: Datasets supporting forcing
DOI: 10.15161/oar.it/73495
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.6084/m9.figshare.12459383
title: Codes and Appendix A1 - Virtual Species SDM

description: Table S1: Literature review on common practices in SDM papers that projected models to a different time period (past or future)<br>Codes: Codes used to run the virtual species simulation
DOI: 10.5281/zenodo.4529143
title: PP-ind: A Repository of Industrial Pair Programming Research Data

description: PP-ind is a repository of research data on industrial pair programming sessions. Since 2007, our research group has collected audio-video-recordings and questionnaire data in 13 companies. A total of 57 developers worked together (mostly in groups of two, but also three or four) in 67 sessions with a mean length of 1:35 hours. A separate tech report provides many details on how this data was collected. While we cannot share the original video recordings due to confidentiality agreements, we <em>do </em>provide transcripts of the pairs' dialog in this data set. Note that we transcribe our data on an <em>is-needed</em> basis. Early versions of this data set will therefore contain only few and partial transcripts which will be amended over time. Files named <code>"session-<strong>&lt;ID&gt;</strong>-transcript.txt"</code> contain original quotations in the language spoken by the recorded developers. For non-English sessions, we also provide non-authoritative <code>"session-<strong>&lt;ID&gt;</strong>-transcript_translated.txt"</code> files (following the same is-needed rule for translating the originals). All our analyses, however, are performed on the raw data as reflected in the original transcripts. See file "<code>transcription-notation.txt</code>" for details on the special notation we use.
DOI: 10.6084/m9.figshare.13988073.v1
title: Supplementary file 4: 104 significant miR-eQTL corresponding to 34 miRNA at FDR &lt; 10%. SNP_ID, miRNA, NegLog10 of p-values, genomic positions, (Coturnix_japonica 2.0). from Genetic regulation and heritability of miRNA and mRNA expression link to phosphorus utilization and gut microbiome

description: Improved utilization of phytates and mineral phosphorus (P) in monogastric animals contributes significantly to preserving the finite resource of mineral P and mitigating environmental pollution. In order to identify pathways and to prioritize candidate genes related to P-utilization (PU), the genomic heritability of 77 and 80 trait-dependent expressed miRNAs and mRNAs in 482 Japanese quail were estimated and eQTL (expression quantitative trait loci) were detected. In total, 104 miR-eQTL (microRNA expression quantitative traits loci) were associated with SNPs markers (false discovery rate (FDR) less than 10%) including 41 eQTL of eight miRNAs. Similarly, 944 mRNA-eQTL were identified at the 5% FDR threshold with 573 being cis-eQTL of 36 mRNAs. High heritabilities of miRNA and mRNA expression coincide with highly significant eQTL. Integration of phenotypic data with transcriptome and microbiome data of the same animals revealed genetic regulated mRNA and miRNA transcripts (SMAD3, CAV1, ENNPP6, ATP2B4, miR-148a-3p, miR-146b-5p, miR-16-5p, miR-194, miR-215-5p, miR-199-3p, miR-1388a-3p) and microbes (Candidatus Arthromitus, Enterococcus) that are associated with PU. The results reveal novel insights into the role of mRNAs and miRNAs in host gut tissue functions, which are involved in PU and other related traits, in terms of the genetic regulation and inheritance of their expression and in association with microbiota components.
DOI: 10.6084/m9.figshare.13988073
title: Supplementary file 4: 104 significant miR-eQTL corresponding to 34 miRNA at FDR &lt; 10%. SNP_ID, miRNA, NegLog10 of p-values, genomic positions, (Coturnix_japonica 2.0). from Genetic regulation and heritability of miRNA and mRNA expression link to phosphorus utilization and gut microbiome

description: Improved utilization of phytates and mineral phosphorus (P) in monogastric animals contributes significantly to preserving the finite resource of mineral P and mitigating environmental pollution. In order to identify pathways and to prioritize candidate genes related to P-utilization (PU), the genomic heritability of 77 and 80 trait-dependent expressed miRNAs and mRNAs in 482 Japanese quail were estimated and eQTL (expression quantitative trait loci) were detected. In total, 104 miR-eQTL (microRNA expression quantitative traits loci) were associated with SNPs markers (false discovery rate (FDR) less than 10%) including 41 eQTL of eight miRNAs. Similarly, 944 mRNA-eQTL were identified at the 5% FDR threshold with 573 being cis-eQTL of 36 mRNAs. High heritabilities of miRNA and mRNA expression coincide with highly significant eQTL. Integration of phenotypic data with transcriptome and microbiome data of the same animals revealed genetic regulated mRNA and miRNA transcripts (SMAD3, CAV1, ENNPP6, ATP2B4, miR-148a-3p, miR-146b-5p, miR-16-5p, miR-194, miR-215-5p, miR-199-3p, miR-1388a-3p) and microbes (Candidatus Arthromitus, Enterococcus) that are associated with PU. The results reveal novel insights into the role of mRNAs and miRNAs in host gut tissue functions, which are involved in PU and other related traits, in terms of the genetic regulation and inheritance of their expression and in association with microbiota components.
DOI: 10.6084/m9.figshare.13988076.v1
title: Supplementary file 8 from Genetic regulation and heritability of miRNA and mRNA expression link to phosphorus utilization and gut microbiome

description: Improved utilization of phytates and mineral phosphorus (P) in monogastric animals contributes significantly to preserving the finite resource of mineral P and mitigating environmental pollution. In order to identify pathways and to prioritize candidate genes related to P-utilization (PU), the genomic heritability of 77 and 80 trait-dependent expressed miRNAs and mRNAs in 482 Japanese quail were estimated and eQTL (expression quantitative trait loci) were detected. In total, 104 miR-eQTL (microRNA expression quantitative traits loci) were associated with SNPs markers (false discovery rate (FDR) less than 10%) including 41 eQTL of eight miRNAs. Similarly, 944 mRNA-eQTL were identified at the 5% FDR threshold with 573 being cis-eQTL of 36 mRNAs. High heritabilities of miRNA and mRNA expression coincide with highly significant eQTL. Integration of phenotypic data with transcriptome and microbiome data of the same animals revealed genetic regulated mRNA and miRNA transcripts (SMAD3, CAV1, ENNPP6, ATP2B4, miR-148a-3p, miR-146b-5p, miR-16-5p, miR-194, miR-215-5p, miR-199-3p, miR-1388a-3p) and microbes (Candidatus Arthromitus, Enterococcus) that are associated with PU. The results reveal novel insights into the role of mRNAs and miRNAs in host gut tissue functions, which are involved in PU and other related traits, in terms of the genetic regulation and inheritance of their expression and in association with microbiota components.
DOI: 10.6084/m9.figshare.13988076
title: Supplementary file 8 from Genetic regulation and heritability of miRNA and mRNA expression link to phosphorus utilization and gut microbiome

description: Improved utilization of phytates and mineral phosphorus (P) in monogastric animals contributes significantly to preserving the finite resource of mineral P and mitigating environmental pollution. In order to identify pathways and to prioritize candidate genes related to P-utilization (PU), the genomic heritability of 77 and 80 trait-dependent expressed miRNAs and mRNAs in 482 Japanese quail were estimated and eQTL (expression quantitative trait loci) were detected. In total, 104 miR-eQTL (microRNA expression quantitative traits loci) were associated with SNPs markers (false discovery rate (FDR) less than 10%) including 41 eQTL of eight miRNAs. Similarly, 944 mRNA-eQTL were identified at the 5% FDR threshold with 573 being cis-eQTL of 36 mRNAs. High heritabilities of miRNA and mRNA expression coincide with highly significant eQTL. Integration of phenotypic data with transcriptome and microbiome data of the same animals revealed genetic regulated mRNA and miRNA transcripts (SMAD3, CAV1, ENNPP6, ATP2B4, miR-148a-3p, miR-146b-5p, miR-16-5p, miR-194, miR-215-5p, miR-199-3p, miR-1388a-3p) and microbes (Candidatus Arthromitus, Enterococcus) that are associated with PU. The results reveal novel insights into the role of mRNAs and miRNAs in host gut tissue functions, which are involved in PU and other related traits, in terms of the genetic regulation and inheritance of their expression and in association with microbiota components.
DOI: 10.6084/m9.figshare.13988082.v1
title: Supplementary file 2: Primer sequences for mRNA qPCR from Genetic regulation and heritability of miRNA and mRNA expression link to phosphorus utilization and gut microbiome

description: Improved utilization of phytates and mineral phosphorus (P) in monogastric animals contributes significantly to preserving the finite resource of mineral P and mitigating environmental pollution. In order to identify pathways and to prioritize candidate genes related to P-utilization (PU), the genomic heritability of 77 and 80 trait-dependent expressed miRNAs and mRNAs in 482 Japanese quail were estimated and eQTL (expression quantitative trait loci) were detected. In total, 104 miR-eQTL (microRNA expression quantitative traits loci) were associated with SNPs markers (false discovery rate (FDR) less than 10%) including 41 eQTL of eight miRNAs. Similarly, 944 mRNA-eQTL were identified at the 5% FDR threshold with 573 being cis-eQTL of 36 mRNAs. High heritabilities of miRNA and mRNA expression coincide with highly significant eQTL. Integration of phenotypic data with transcriptome and microbiome data of the same animals revealed genetic regulated mRNA and miRNA transcripts (SMAD3, CAV1, ENNPP6, ATP2B4, miR-148a-3p, miR-146b-5p, miR-16-5p, miR-194, miR-215-5p, miR-199-3p, miR-1388a-3p) and microbes (Candidatus Arthromitus, Enterococcus) that are associated with PU. The results reveal novel insights into the role of mRNAs and miRNAs in host gut tissue functions, which are involved in PU and other related traits, in terms of the genetic regulation and inheritance of their expression and in association with microbiota components.
DOI: 10.6084/m9.figshare.13988079.v1
title: Supplementary file 6 from Genetic regulation and heritability of miRNA and mRNA expression link to phosphorus utilization and gut microbiome

description: Improved utilization of phytates and mineral phosphorus (P) in monogastric animals contributes significantly to preserving the finite resource of mineral P and mitigating environmental pollution. In order to identify pathways and to prioritize candidate genes related to P-utilization (PU), the genomic heritability of 77 and 80 trait-dependent expressed miRNAs and mRNAs in 482 Japanese quail were estimated and eQTL (expression quantitative trait loci) were detected. In total, 104 miR-eQTL (microRNA expression quantitative traits loci) were associated with SNPs markers (false discovery rate (FDR) less than 10%) including 41 eQTL of eight miRNAs. Similarly, 944 mRNA-eQTL were identified at the 5% FDR threshold with 573 being cis-eQTL of 36 mRNAs. High heritabilities of miRNA and mRNA expression coincide with highly significant eQTL. Integration of phenotypic data with transcriptome and microbiome data of the same animals revealed genetic regulated mRNA and miRNA transcripts (SMAD3, CAV1, ENNPP6, ATP2B4, miR-148a-3p, miR-146b-5p, miR-16-5p, miR-194, miR-215-5p, miR-199-3p, miR-1388a-3p) and microbes (Candidatus Arthromitus, Enterococcus) that are associated with PU. The results reveal novel insights into the role of mRNAs and miRNAs in host gut tissue functions, which are involved in PU and other related traits, in terms of the genetic regulation and inheritance of their expression and in association with microbiota components.
DOI: 10.6084/m9.figshare.13988082
title: Supplementary file 2: Primer sequences for mRNA qPCR from Genetic regulation and heritability of miRNA and mRNA expression link to phosphorus utilization and gut microbiome

description: Improved utilization of phytates and mineral phosphorus (P) in monogastric animals contributes significantly to preserving the finite resource of mineral P and mitigating environmental pollution. In order to identify pathways and to prioritize candidate genes related to P-utilization (PU), the genomic heritability of 77 and 80 trait-dependent expressed miRNAs and mRNAs in 482 Japanese quail were estimated and eQTL (expression quantitative trait loci) were detected. In total, 104 miR-eQTL (microRNA expression quantitative traits loci) were associated with SNPs markers (false discovery rate (FDR) less than 10%) including 41 eQTL of eight miRNAs. Similarly, 944 mRNA-eQTL were identified at the 5% FDR threshold with 573 being cis-eQTL of 36 mRNAs. High heritabilities of miRNA and mRNA expression coincide with highly significant eQTL. Integration of phenotypic data with transcriptome and microbiome data of the same animals revealed genetic regulated mRNA and miRNA transcripts (SMAD3, CAV1, ENNPP6, ATP2B4, miR-148a-3p, miR-146b-5p, miR-16-5p, miR-194, miR-215-5p, miR-199-3p, miR-1388a-3p) and microbes (Candidatus Arthromitus, Enterococcus) that are associated with PU. The results reveal novel insights into the role of mRNAs and miRNAs in host gut tissue functions, which are involved in PU and other related traits, in terms of the genetic regulation and inheritance of their expression and in association with microbiota components.
DOI: 10.6084/m9.figshare.13988079
title: Supplementary file 6 from Genetic regulation and heritability of miRNA and mRNA expression link to phosphorus utilization and gut microbiome

description: Improved utilization of phytates and mineral phosphorus (P) in monogastric animals contributes significantly to preserving the finite resource of mineral P and mitigating environmental pollution. In order to identify pathways and to prioritize candidate genes related to P-utilization (PU), the genomic heritability of 77 and 80 trait-dependent expressed miRNAs and mRNAs in 482 Japanese quail were estimated and eQTL (expression quantitative trait loci) were detected. In total, 104 miR-eQTL (microRNA expression quantitative traits loci) were associated with SNPs markers (false discovery rate (FDR) less than 10%) including 41 eQTL of eight miRNAs. Similarly, 944 mRNA-eQTL were identified at the 5% FDR threshold with 573 being cis-eQTL of 36 mRNAs. High heritabilities of miRNA and mRNA expression coincide with highly significant eQTL. Integration of phenotypic data with transcriptome and microbiome data of the same animals revealed genetic regulated mRNA and miRNA transcripts (SMAD3, CAV1, ENNPP6, ATP2B4, miR-148a-3p, miR-146b-5p, miR-16-5p, miR-194, miR-215-5p, miR-199-3p, miR-1388a-3p) and microbes (Candidatus Arthromitus, Enterococcus) that are associated with PU. The results reveal novel insights into the role of mRNAs and miRNAs in host gut tissue functions, which are involved in PU and other related traits, in terms of the genetic regulation and inheritance of their expression and in association with microbiota components.