cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/16csf-eds64
title: P41+P41

description: Raw data files of P41+P41
description: <strong>Tilt Series Date:</strong> 2015-04-18</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> Mycoplasma pneumoniae</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 90.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2015-04-18-19/rawdata/</p>atlas20006.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2015-04-18-19/rawdata/atlas20006.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas20006_part131_2.rec,  Reconstruction (Pixel Size 1.56 nm), 222.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2015-04-18-19/3dimage_54512/atlas20006_part131_2.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/v7pyg-6ef40
title: PW1307

description: PW 1307 Pseudomonas aeruginosa PAO1 delta CheA (F7)transposon mutant collection
description: <strong>Tilt Series Date:</strong> 2015-05-29</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-05-29-3/rawdata/</p>PW1307deltaCheA0012.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-05-29-3/rawdata/PW1307deltaCheA0012.mrc"
        > <i class="download icon"></i> Download </a></p>

        PW1307deltaCheA0012_full.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-05-29-3/3dimage_57511/PW1307deltaCheA0012_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.17026/pt/v7atuy
title: Comparing Nutrient Use Efficiency Using Nutrient Budgets in Monoculture and Polyculture Fishponds

description: This dataset contains the input data, intermediate calculations, and final results used to construct comprehensive nutrient budgets (C, N, and P) in experimental fishponds with different species compositions, including Nile tilapia, grass carp, and polyculture systems. It includes measurements of water, sediment, and fish biomass, feed inputs, and derived fluxes such as sedimentation, water inflow/outflow, and unaccounted losses. Calculations incorporate carbon and nitrogen concentrations, C:N ratios, and mass balances across compartments, allowing detailed assessment of nutrient cycling and efficiency in aquaculture systems.
DOI: 10.22002/zd7a2-bxn25
title: Acidaminococcus

description: Raw data files of Acidaminococcus
description: <strong>Tilt Series Date:</strong> 2015-05-23</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acidaminococcus fermentans</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-05-23-7/rawdata/</p>Acidaminococcus0008.mrc,  Tilt Series (Pixel Size 0.63 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-05-23-7/rawdata/Acidaminococcus0008.mrc"
        > <i class="download icon"></i> Download </a></p>

        Acidaminococcus0008_full.rec,  Reconstruction (Pixel Size 2.52 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-05-23-7/3dimage_57400/Acidaminococcus0008_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/s9vn7-ja489
title: E. coli pED208_log

description: cells expressing T4SS in log phase
description: <strong>Tilt Series Date:</strong> 2015-04-13</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-04-13-20/rawdata/</p>pED_log20020.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-04-13-20/rawdata/pED_log20020.mrc"
        > <i class="download icon"></i> Download </a></p>

        pED_log20020_full.rec,  Reconstruction (Pixel Size 2.0 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-04-13-20/3dimage_54032/pED_log20020_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/6b6rz-wsz52
title: COS7 cells

description: These datasets have both INS1-E and COS7 cells (mostly COS7). NOTE: the ambiguity is due to one of the grids getting swapped while working with Stephen Carter. These datasets contain some of my first tomograms to help me learn tomography.
description: <strong>Tilt Series Date:</strong> 2015-09-30</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> Cos7</p>
<strong>Strain:</strong> Cos7 cells</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 240.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2015-09-30-25/3dimage_70018/</p>Features0001_part121_14.rec,  Reconstruction (Pixel Size 1.92 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2015-09-30-25/3dimage_70018/Features0001_part121_14.rec"
        > <i class="download icon"></i> Download </a></p>

        Features0001.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2015-09-30-25/rawdata/Features0001.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/x5w3j-05j45
title: pED208_log

description: E. coli cells carrying the pED208 plasmid for T4SS were grown to OD of 0.5
description: <strong>Tilt Series Date:</strong> 2015-03-28</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-03-28-13/rawdata/</p>pED208_log0009.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-03-28-13/rawdata/pED208_log0009.mrc"
        > <i class="download icon"></i> Download </a></p>

        pED208_log0009_part121_44.rec,  Reconstruction (Pixel Size 2.0 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-03-28-13/3dimage_53413/pED208_log0009_part121_44.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.x8ush9
title: Occurrence Download

description: A dataset containing 303 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pungitius platygaster)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 303 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046698-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/gfctr-x1t19
title: COS7 cells

description: These datasets have both INS1-E and COS7 cells (mostly COS7). NOTE: the ambiguity is due to one of the grids getting swapped while working with Stephen Carter. These datasets contain some of my first tomograms to help me learn tomography.
description: <strong>Tilt Series Date:</strong> 2015-09-30</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> Cos7</p>
<strong>Strain:</strong> Cos7 cells</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 240.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2015-09-30-29/3dimage_70026/</p>Features0005_part121_4.rec,  Reconstruction (Pixel Size 1.92 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2015-09-30-29/3dimage_70026/Features0005_part121_4.rec"
        > <i class="download icon"></i> Download </a></p>

        Features0005.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2015-09-30-29/rawdata/Features0005.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ef28m-73p87
title: HeLa cells + thymidine

description: thymidine is used to synchronize HeLa cell division at cytokinesis stage.
description: <strong>Tilt Series Date:</strong> 2015-06-16</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> HeLa cells</p>
<strong>Strain:</strong> ATCC</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -8.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2015-06-16-23/rawdata/</p>hela_thym_montage0023.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2015-06-16-23/rawdata/hela_thym_montage0023.mrc"
        > <i class="download icon"></i> Download </a></p>

        hela_thym_montage0023_full.rec,  Reconstruction (Pixel Size 2.4 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2015-06-16-23/3dimage_58499/hela_thym_montage0023_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/1z8k1-rhx42
title: P41+P41

description: Raw data files of P41+P41
description: <strong>Tilt Series Date:</strong> 2015-04-18</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> Mycoplasma pneumoniae</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 90.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2015-04-18-3/rawdata/</p>atlas10003.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2015-04-18-3/rawdata/atlas10003.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas10003.rec,  Reconstruction (Pixel Size 1.56 nm), 444.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2015-04-18-3/3dimage_54481/atlas10003.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.frt2qc
title: Occurrence Download

description: A dataset containing 1538 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calystegia sepium",
 "Country is Ukraine",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1538 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046699-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/gkkjf-te482
title: U2OS-periphery

description: Raw data files of U2OS-periphery
description: <strong>Tilt Series Date:</strong> 2018-06-22</p>
<strong>Data Taken By:</strong> Wei Zhao</p>
<strong>Species / Specimen:</strong> U2OS</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 1.5°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -8.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wza2018-06-22-12/rawdata/</p>ts12.mrc,  Tilt Series (Pixel Size 0.431 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wza2018-06-22-12/rawdata/ts12.mrc"
        > <i class="download icon"></i> Download </a></p>

        ts12_bin2.rec,  Reconstruction (Pixel Size 0.0 nm), 299.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wza2018-06-22-12/3dimage_92966/ts12_bin2.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/06zcm-rwk32
title: HeLa cells expressing TRIM5α-YFP

description: Raw data files of HeLa cells expressing TRIM5α-YFP
description: <strong>Tilt Series Date:</strong> 2017-02-24</p>
<strong>Data Taken By:</strong> Stephen Carter</p>
<strong>Species / Specimen:</strong> Hela cells expressing TRIM5a-YFP</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-55.0°, 55.0°), step: 1°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -10.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> None</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
description: Files available via S3 at s://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2017-02-24-8/rawdata/</p>tomography22.mrc,  Tilt Series (Pixel Size 3.712 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2017-02-24-8/rawdata/tomography22.mrc"
        > <i class="download icon"></i> Download </a></p>

        tomography22.rec,  Reconstruction (Pixel Size 14.848 nm), 1.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2017-02-24-8/3dimage_116963/tomography22.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/kwm40-bkm58
title: MitoTracker Red Cal-YFP INS-1E

description: Raw data files of MitoTracker Red Cal-YFP INS-1E
description: <strong>Tilt Series Date:</strong> 2016-08-15</p>
<strong>Data Taken By:</strong> Stephen Carter</p>
<strong>Species / Specimen:</strong> INS-1E Pancreatic Cells expressing Calreticulin-YFP</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -9.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> 0</p>
<strong>Acquisition Software:</strong> Undefined</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
description: Files available via S3 at s://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2016-08-15-13/3dimage_79314/</p>tomography20.rec,  Reconstruction (Pixel Size 24.0 nm), 2.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2016-08-15-13/3dimage_79314/tomography20.rec"
        > <i class="download icon"></i> Download </a></p>

        tomography20.mrc,  Tilt Series (Pixel Size 6.0 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2016-08-15-13/rawdata/tomography20.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/03gnt-bqf89
title: E. coli EEEE

description: Penicillin lysed E. coli (grown in TB)
description: <strong>Tilt Series Date:</strong> 2015-03-06</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: 6.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-03-06-19/rawdata/</p>EEEENEW0015.mrc,  Tilt Series (Pixel Size 0.27 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-03-06-19/rawdata/EEEENEW0015.mrc"
        > <i class="download icon"></i> Download </a></p>

        EEEENEW0015_full.rec,  Reconstruction (Pixel Size 1.08 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-03-06-19/3dimage_52678/EEEENEW0015_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ddsvq-w6z82
title: E. coli EEEE

description: Penicillin lysed E. coli (grown in TB)
description: <strong>Tilt Series Date:</strong> 2015-03-06</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: 6.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-03-06-7/rawdata/</p>EEEENEW0003.mrc,  Tilt Series (Pixel Size 0.27 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-03-06-7/rawdata/EEEENEW0003.mrc"
        > <i class="download icon"></i> Download </a></p>

        EEEENEW0003_full.rec,  Reconstruction (Pixel Size 1.08 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-03-06-7/3dimage_52625/EEEENEW0003_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/f8drn-1rj98
title: V. cholerae

description: for MSHA pili
description: <strong>Tilt Series Date:</strong> 2016-01-04</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O1 biovar El Tor</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at s://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-01-04-53/3dimage_72090/</p>20160104_Vcholerae_MSHA_10053_part121_21.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
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        20160104_Vcholerae_MSHA_10053.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
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