cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.tcvrsx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eriochloa punctata",
 "Country is Honduras",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051167-250920141307145/datasets/export for details.
DOI: 10.15468/dl.qtms5n
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eriochloa punctata",
 "Country is Guatemala",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051166-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2t8rge
title: Occurrence Download

description: A dataset containing 2216 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sigesbeckia orientalis",
 "Geometry POLYGON ((26.04335 1.226334, 135.0263 1.226334, 135.0263 55.38525, 26.04335 55.38525, 26.04335 1.226334))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2216 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051169-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.79vavd
title: Occurrence Download

description: A dataset containing 2054 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthogobius flavimanus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2054 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051170-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26023/41s9-9qkj-3w00
title: ACE-ASIA: R/V Ron Brown Aerosol Sub- and super-micron mineral dust. Version 1.0

description: This dataset contains aerosol sub- and super-micron mineral dust concentrations using a spectrometer, taken aboard the Ron Brown ship during the ACE-Asia field project. This dataset contains the tab delimited (.acf) data files. Data can also be downloaded in a netCDF format.
DOI: 10.15468/dl.wtgxq7
title: Occurrence Download

description: A dataset containing 19817128 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PhylumKey is one of (Echinodermata, Cnidaria, Porifera, Brachiopoda, Bryozoa, Sipuncula, Nemertea, Animalia)",
 "OrderKey is one of (Chaetodermatida, Neopilinida, Dentaliida, Gadilida)"
 ]
 },
 "DecimalLatitude is greater than or equal to 60",
 "DecimalLatitude is less than or equal to 90",
 "HasCoordinate is true",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2024",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 19817128 records from 409 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051137-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vgjhh5
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heteranthelium piliferum",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051171-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ust7w
title: Occurrence Download

description: A dataset containing 4826 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silene baccifera",
 "Geometry POLYGON ((26.04335 1.226334, 135.0263 1.226334, 135.0263 55.38525, 26.04335 55.38525, 26.04335 1.226334))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4826 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051173-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dpjdw9
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hordeum stenostachys",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051174-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v6vyp2
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hordeum stenostachys",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051176-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gpcseu
title: Occurrence Download

description: A dataset containing 566 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-78.04545 20.52895,-78.02395 20.61496,-78.67612 20.93029,-78.97712 21.18113,-78.99146 21.5108,-79.52896 21.51796,-79.85863 21.32446,-79.51463 20.75112,-78.25328 20.25662,-78.04545 20.52895))",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 566 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051178-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vu5q2e
title: Occurrence Download

description: A dataset containing 566 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-78.04545 20.52895,-78.02395 20.61496,-78.67612 20.93029,-78.97712 21.18113,-78.99146 21.5108,-79.52896 21.51796,-79.85863 21.32446,-79.51463 20.75112,-78.25328 20.25662,-78.04545 20.52895))",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 566 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051179-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26023/v5h1-d55z-cs0f
title: ACE-ASIA: R/V Ron Brown Aerosol Sub- and super-micron mineral dust. Version 1.0

description: This dataset contains aerosol sub- and super-micron mineral dust concentrations using a spectrometer, taken aboard the Ron Brown ship during the ACE-Asia field project. This dataset contains the netCDF data files. Data can also be downloaded in a tab delimited (.acf) format.
DOI: 10.15468/dl.5h2dqd
title: Occurrence Download

description: A dataset containing 239561 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salix aurita"
 ]
}

 The dataset includes 239561 records from 935 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051134-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fdngyc
title: Occurrence Download

description: A dataset containing 362970 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1980",
 "TaxonKey is one of (Abramis brama (Le Sueur, 1819), Abramis argyreus Valenciennes, 1844, Abramis vetula Heckel, 1836, Abramis microlepidotus Valenciennes, 1844, Abramis vulgaris Mauduyt, 1849, Abramis gehini Blanchard, 1866, Cyprinus brama Linnaeus, 1758, Ciprinus latus Dralet, 1821, Brama lugdunensis Bleeker, 1868, Abramis brama (Linnaeus, 1758))",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 },
 "BasisOfRecord is one of (Human Observation, Observation, Specimen)",
 "HasCoordinate is true",
 {
 "not" : {
 "Country" : [
 "is one of (American Samoa, Guam, Northern Mariana Islands, Puerto Rico, United States Minor Outlying Islands, United States of America, Virgin Islands (U.S.))"
 ]
 }
 }
 ]
}

 The dataset includes 362970 records from 355 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017614-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t7fcy9
title: Occurrence Download

description: A dataset containing 284 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Angraecum sesquipedale Thouars"
 ]
}

 The dataset includes 284 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017633-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26787061.v1
title: Additional file 5 of PRRSV hijacks DDX3X protein and induces ferroptosis to facilitate viral replication

description: Additional file 5. Detailed information on down-regulated DEGs.
DOI: 10.6084/m9.figshare.26787067
title: Additional file 7 of PRRSV hijacks DDX3X protein and induces ferroptosis to facilitate viral replication

description: Additional file 7. KEGG pathway enrichment analysis of DEGs.
DOI: 10.6084/m9.figshare.26787067.v1
title: Additional file 7 of PRRSV hijacks DDX3X protein and induces ferroptosis to facilitate viral replication

description: Additional file 7. KEGG pathway enrichment analysis of DEGs.
DOI: 10.6084/m9.figshare.26787076.v1
title: Additional file 10 of PRRSV hijacks DDX3X protein and induces ferroptosis to facilitate viral replication

description: Additional file 10. KEGG pathway enrichment analysis of DEMs.
DOI: 10.6084/m9.figshare.26787058.v1
title: Additional file 4 of PRRSV hijacks DDX3X protein and induces ferroptosis to facilitate viral replication

description: Additional file 4. Detailed information on up-regulated DEGs.
DOI: 10.6084/m9.figshare.26787079.v1
title: Additional file 11 of PRRSV hijacks DDX3X protein and induces ferroptosis to facilitate viral replication

description: Additional file 11. KEGG pathway analysed by combined DEGs and DEMs in positive ion mode.
DOI: 10.6084/m9.figshare.26787064.v1
title: Additional file 6 of PRRSV hijacks DDX3X protein and induces ferroptosis to facilitate viral replication

description: Additional file 6. GO functional annotation of DEGs.
DOI: 10.6084/m9.figshare.26787058
title: Additional file 4 of PRRSV hijacks DDX3X protein and induces ferroptosis to facilitate viral replication

description: Additional file 4. Detailed information on up-regulated DEGs.
DOI: 10.6084/m9.figshare.26787061
title: Additional file 5 of PRRSV hijacks DDX3X protein and induces ferroptosis to facilitate viral replication

description: Additional file 5. Detailed information on down-regulated DEGs.
DOI: 10.6084/m9.figshare.26787070.v1
title: Additional file 8 of PRRSV hijacks DDX3X protein and induces ferroptosis to facilitate viral replication

description: Additional file 8. Detailed information on DEMs identified in positive ion mode.
DOI: 10.6084/m9.figshare.26787073
title: Additional file 9 of PRRSV hijacks DDX3X protein and induces ferroptosis to facilitate viral replication

description: Additional file 9. Detailed information on DEMs identified in negative ion mode.
DOI: 10.6084/m9.figshare.26787073.v1
title: Additional file 9 of PRRSV hijacks DDX3X protein and induces ferroptosis to facilitate viral replication

description: Additional file 9. Detailed information on DEMs identified in negative ion mode.
DOI: 10.6084/m9.figshare.26787076
title: Additional file 10 of PRRSV hijacks DDX3X protein and induces ferroptosis to facilitate viral replication

description: Additional file 10. KEGG pathway enrichment analysis of DEMs.
DOI: 10.6084/m9.figshare.26787079
title: Additional file 11 of PRRSV hijacks DDX3X protein and induces ferroptosis to facilitate viral replication

description: Additional file 11. KEGG pathway analysed by combined DEGs and DEMs in positive ion mode.
DOI: 10.6084/m9.figshare.26787082
title: Additional file 12 of PRRSV hijacks DDX3X protein and induces ferroptosis to facilitate viral replication

description: Additional file 12. KEGG pathway analysed by combined DEGs and DEMs in negative ion mode.
DOI: 10.6084/m9.figshare.26787082.v1
title: Additional file 12 of PRRSV hijacks DDX3X protein and induces ferroptosis to facilitate viral replication

description: Additional file 12. KEGG pathway analysed by combined DEGs and DEMs in negative ion mode.
DOI: 10.6084/m9.figshare.26787064
title: Additional file 6 of PRRSV hijacks DDX3X protein and induces ferroptosis to facilitate viral replication

description: Additional file 6. GO functional annotation of DEGs.
DOI: 10.5281/zenodo.13346714
title: ENDGAME - Laboratory Experiment 2023-11-07 Exp. 006 - High Speed Camera data

description: Preliminary 2D Shock-tube experiments in combination with high speed Schlieren shadow photography. 

We developed a 2D shock-tube setup using 2 plexiglass sheets (30 cm x 50 cm x 1 cm) separated by 2 lateral bars (gap between plexiglass sheets 1.2 cm). We injected compressed air into the 2D setup at different overpressures (up to 8 bar). The high-pressure reservoir is connected with the 2D apparatus through a diaphragm pulse valve which allows a fast release of pressurized gas into the system. The 2D setup was either empty (i.e. with air at ambient conditions) or filled with a given amount of fluids (water or viscous fluid) or small particles. Images were collected at a frame rate of 50000 fps. The field of view of the images show the jet flow dynamics in the upper part of the 2 plexiglass sheets and in the atmosphere. 

By using Schlieren shadow photography we can see the presence of some textures in the images, which are likely to be generated by the plexiglass sheets.
DOI: 10.5281/zenodo.13346715
title: ENDGAME - Laboratory Experiment 2023-11-07 Exp. 006 - High Speed Camera data

description: Preliminary 2D Shock-tube experiments in combination with high speed Schlieren shadow photography. 

We developed a 2D shock-tube setup using 2 plexiglass sheets (30 cm x 50 cm x 1 cm) separated by 2 lateral bars (gap between plexiglass sheets 1.2 cm). We injected compressed air into the 2D setup at different overpressures (up to 8 bar). The high-pressure reservoir is connected with the 2D apparatus through a diaphragm pulse valve which allows a fast release of pressurized gas into the system. The 2D setup was either empty (i.e. with air at ambient conditions) or filled with a given amount of fluids (water or viscous fluid) or small particles. Images were collected at a frame rate of 50000 fps. The field of view of the images show the jet flow dynamics in the upper part of the 2 plexiglass sheets and in the atmosphere. 

By using Schlieren shadow photography we can see the presence of some textures in the images, which are likely to be generated by the plexiglass sheets.
DOI: 10.15468/dl.wxhs49
title: Occurrence Download

description: A dataset containing 762 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((144.156383 -36.858585, 144.156383 -36.854094, 144.165366 -36.854094, 144.165366 -36.863077, 144.167612 -36.863077, 144.167612 -36.867568, 144.172103 -36.867568, 144.172103 -36.863077, 144.187824 -36.863077, 144.187824 -36.869814, 144.19007 -36.869814, 144.19007 -36.874306, 144.192316 -36.874306, 144.192316 -36.87206, 144.201299 -36.87206, 144.201299 -36.869814, 144.20579 -36.869814, 144.20579 -36.87206, 144.210282 -36.87206, 144.210282 -36.869814, 144.214774 -36.869814, 144.214774 -36.867568, 144.219265 -36.867568, 144.219265 -36.851848, 144.20579 -36.851848, 144.20579 -36.84511, 144.210282 -36.84511, 144.210282 -36.838373, 144.201299 -36.838373, 144.201299 -36.84511, 144.196807 -36.84511, 144.196807 -36.847356, 144.187824 -36.847356, 144.187824 -36.851848, 144.181087 -36.851848, 144.181087 -36.84511, 144.174349 -36.84511, 144.174349 -36.847356, 144.167612 -36.847356, 144.167612 -36.84511, 144.142908 -36.84511, 144.142908 -36.851848, 144.136171 -36.851848, 144.136171 -36.858585, 144.133925 -36.858585, 144.133925 -36.860831, 144.151891 -36.860831, 144.151891 -36.858585, 144.156383 -36.858585), (144.196807 -36.847356, 144.203545 -36.847356, 144.203545 -36.851848, 144.196807 -36.851848, 144.196807 -36.847356)), ((144.156383 -36.858585, 144.156383 -36.860831, 144.16312 -36.860831, 144.16312 -36.858585, 144.156383 -36.858585)))"
 ]
}

 The dataset includes 762 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075377-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26786040.v1
title: Additional file 2 of Unmasking of molecular players: proteomic profiling of vitreous humor in pathologic myopia

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26787433.v1
title: Additional file 4 of Unmasking of molecular players: proteomic profiling of vitreous humor in pathologic myopia

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.26787433
title: Additional file 4 of Unmasking of molecular players: proteomic profiling of vitreous humor in pathologic myopia

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.26787430.v1
title: Additional file 3 of Unmasking of molecular players: proteomic profiling of vitreous humor in pathologic myopia

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26787430
title: Additional file 3 of Unmasking of molecular players: proteomic profiling of vitreous humor in pathologic myopia

description: Supplementary Material 3
DOI: 10.25903/2ky5-yh72
title: Data: Quantifying mass-dependent isotope fractionation and nuclear field shift effects for the light rare Earth elements in hydrous systems 

description: <p><b>Background:</b>This research contribution is part of the project "Linking continental emergence and climatic evolution on the early earth". The aim of the project is to use stable isotopes of rear Earth elements in ancient marine sediments to reconstruct palaeoenvironment. Therefore, ab initio calculations were performed to understand isotope fractionation on a molecular scale from a theoretical perspective. </p>
<p>The ab initio calculations contain reduced partition function ratios (as ln&beta;) for aqueous complexes of some light rear Earth elements (La, Ce, Nd). These values help to predict mass-dependent isotope fractionation of these elements in hydrous systems like seawater or hydrothermal fluids. In addition, ln&beta; values for mass-independent nuclear field shift effects for La-complexes and Ce oxidation reactions are included. Also, the data contains speciation models of rear Earth elements in hydrous systems to quantify their complexation and isotope fractionation with varying fluid pH and temperature.</p>
<p>The ln&beta; values were calculated from molecular frequencies and total energies derived from calculations using the software packages ORCA, and DIRAC on the high performance computing (HPC) cluster at James Cook University. The atomic coordinates of the input files were created in AVOGADRO. The ln&beta; values were calculated from molecular vibrations and energies. Speciation modelling was performed in PHREEQC with fluid parameters obtained from the MARHYS database.</p>
<p><b>This data record contains:</b></p>
<p>1 MS Excel (.xlsx) file containing ab initio calculations of aqueous complexes of rare Earth elements and speciation models of seawater and hydrothermal fluids.</p>
<p><b>A more detailed description of the methodology and results is available in the related publication.</b></p>
<p>Software/equipment used to create/collect the data: ORCA, DIRAC, PHREEQC</p>
DOI: 10.6084/m9.figshare.26787136
title: Additional file 2 of Defining Vaginal Community Dynamics: daily microbiome transitions, the role of menstruation, bacteriophages, and bacterial genes

description: Additional file 2: Supplementary Table S1. Full ASV table for samples sequenced by 16S marker gene sequencing. Each sample is in a column, named by individual ID and cycle day, and each ASV in a row. Taxonomic annotations are in the second-to-last column and centroid sequence in the last. Supplementary Table S2. Full taxonomic annotation and feature counts for the samples sequenced by shotgun. Each sample is in a column, named by participant and cycle day, and each taxon in a row. Supplementary Table S3. Differential abundance results for samples in CST-IA from individuals with menses-related dysbiotic or unstable VCD compared to constant eubiotic VCD. Supplementary Table S4. Differential abundance results for samples in CST-IB from individuals with menses-related dysbiotic or unstable VCD compared to constant eubiotic VCD. Supplementary Table S5. Differential abundance results for samples in CST-IIIA from individuals with menses-related dysbiotic or unstable VCD compared to constant dysbiotic VCD. Supplementary Table S6. Differential abundance results for samples in CST-IIIB from individuals with menses-related dysbiotic or unstable VCD compared to constant dysbiotic VCD. Supplementary Table S7. Differential abundance results for all samples in menses-related dysbiotic, unstable and constant dysbiotic VCD against constant eubiotic. Supplementary Table S8. Differential abundance results for all samples in menses-related dysbiotic, unstable and constant eubiotic VCD against constant dysbiotic. Supplementary Table S9. Differential frequency of gene clusters in Lactobacillus spp., contrasting constant eubiotic and menses-related dysbiotic vs. unstable and constant dysbiotic. Supplementary Table S10. Differential frequency of gene clusters in Gardnerella spp., contrasting constant eubiotic and menses-related dysbiotic vs. unstable and constant dysbiotic. Supplementary Table S11. Differential frequency of gene clusters in Prevotella spp., contrasting constant eubiotic and menses-related eubiotic vs. unstable and constant dysbiotic.