cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25573/data.10059455.v23
title: Monthly Summary_BCI, horizontal

description: Monthly and daily summary from Barro Colorado Island (BCI). Data organized in horizontal format for seasonal and inter-year comparisons<br>Location 9°9'42.36"N, 79°50'15.67"W<br>Parameters: air temperature, relative humidity, wind speed and direction, precipitation, sea surface temperature, solar radiation (pyranometer), air pressure, soil moisture, runoff, potential evapotranspiration, wet/dry season starting dates<br><br>Lutz catchment is a 9.73ha protected watershed on BCIThe Lutz tower was built in 1972 and was originally 42m. In 2002 it was increased to 48m<br>The data from 48m should be considered a separate data series from the data at 42m. Wind speed is significantly higher at 48m due to the distance to the top of the canopy.<br>The Clearing is a small, open area surrounded by forest and some buildings. Station established in 1972. Consists of a Stevenson screen with max/min thermometers and air pressure sensor. Temperature/humidity sensor, rain gauge and evaporation sensors are located at various locations around the screen.
DOI: 10.6084/m9.figshare.19783000
title: JAKEE Data Dictionary.xlsx

description: Data Dictionary for accompanying de-identified JAKEE STATA data set.
DOI: 10.6084/m9.figshare.19783000.v1
title: JAKEE Data Dictionary.xlsx

description: Data Dictionary for accompanying de-identified JAKEE STATA data set.
DOI: 10.25573/data.10042460.v16
title: Barro Colorado Island, Lutz Catchment_Runoff

description: Barro Colorado Island (BCI), Conrad Catchment weirLocation 9°9'25.50"N, 79°50'53.09"W<br>Weir interval stage, avg. flow rate and total discharge<br>Lutz catchment is a 9.73ha protected watershed on BCIThe weir was constructed in 1972<br>
DOI: 10.17028/rd.lboro.19739614
title: Supplementary information files for article Targeted delivery of narrow-spectrum protein antibiotics to the lower gastrointestinal tract in a murine model of Escherichia coli colonization

description: Supplementary information files for Targeted delivery of narrow-spectrum protein antibiotics to the lower gastrointestinal tract in a murine model of Escherichia coli colonization <br> Bacteriocins are narrow-spectrum protein antibiotics that could potentially be used to engineer the human gut microbiota. However, technologies for targeted delivery of proteins to the lower gastrointestinal (GI) tract in preclinical animal models are currently lacking. In this work, we have developed methods for the microencapsulation of Escherichia coli targeting bacteriocins, colicin E9 and Ia, in a pH responsive formulation to allow their targeted delivery and controlled release in an in vivo murine model of E. coli colonization. Membrane emulsification was used to produce a water-in-oil emulsion with the water-soluble polymer subsequently cross-linked to produce hydrogel microcapsules. The microcapsule fabrication process allowed control of the size of the drug delivery system and a near 100% yield of the encapsulated therapeutic cargo. pH-triggered release of the encapsulated colicins was achieved using a widely available pH-responsive anionic copolymer in combination with alginate biopolymers. In vivo experiments using a murine E. coli intestinal colonization model demonstrated that oral delivery of the encapsulated colicins resulted in a significant decrease in intestinal colonization and reduction in E. coli shedding in the feces of the animals. Employing controlled release drug delivery systems such as that described here is essential to enable delivery of new protein therapeutics or other biological interventions for testing within small animal models of infection. Such approaches may have considerable value for the future development of strategies to engineer the human gut microbiota, which is central to health and disease.
DOI: 10.17028/rd.lboro.19739614.v1
title: Supplementary information files for article Targeted delivery of narrow-spectrum protein antibiotics to the lower gastrointestinal tract in a murine model of Escherichia coli colonization

description: Supplementary information files for Targeted delivery of narrow-spectrum protein antibiotics to the lower gastrointestinal tract in a murine model of Escherichia coli colonization <br> Bacteriocins are narrow-spectrum protein antibiotics that could potentially be used to engineer the human gut microbiota. However, technologies for targeted delivery of proteins to the lower gastrointestinal (GI) tract in preclinical animal models are currently lacking. In this work, we have developed methods for the microencapsulation of Escherichia coli targeting bacteriocins, colicin E9 and Ia, in a pH responsive formulation to allow their targeted delivery and controlled release in an in vivo murine model of E. coli colonization. Membrane emulsification was used to produce a water-in-oil emulsion with the water-soluble polymer subsequently cross-linked to produce hydrogel microcapsules. The microcapsule fabrication process allowed control of the size of the drug delivery system and a near 100% yield of the encapsulated therapeutic cargo. pH-triggered release of the encapsulated colicins was achieved using a widely available pH-responsive anionic copolymer in combination with alginate biopolymers. In vivo experiments using a murine E. coli intestinal colonization model demonstrated that oral delivery of the encapsulated colicins resulted in a significant decrease in intestinal colonization and reduction in E. coli shedding in the feces of the animals. Employing controlled release drug delivery systems such as that described here is essential to enable delivery of new protein therapeutics or other biological interventions for testing within small animal models of infection. Such approaches may have considerable value for the future development of strategies to engineer the human gut microbiota, which is central to health and disease.
DOI: 10.6084/m9.figshare.19782556
title: JAKEE_DeIdentified_Dataset.dta

description: STATA source file for participant clinical and biomarker data
DOI: 10.6084/m9.figshare.19782556.v1
title: JAKEE_DeIdentified_Dataset.dta

description: STATA source file for participant clinical and biomarker data
DOI: 10.17028/rd.lboro.19739410
title: Supplementary information files for A circularity indicator tool for measuring the ecological embeddedness of manufacturing

description: Supplementary information files for article A circularity indicator tool for measuring the ecological embeddedness of manufacturing <br> Circularity in manufacturing is critical to reducing raw material usage and waste. Ecological embeddedness examines circular relationships intended to benefit both economic actors and the natural environment. By understanding circular relationships in the value chain, manufacturers can formulate strategies that are eco-effective. This work develops and validates an original circularity tool to measure the ecological embeddedness of manufacturers using exploratory and confirmatory factor analysis. The tool is tested on process manufacturers selling products in the United Kingdom. The three main results are that the tool is useful and comprehensive (87% of users), enables simple comparisons with competitors, and identifies weaknesses in strategies related to the five dimensions connecting manufacturers, consumers, and the environment: understanding, realising, utilising, negotiating, and reclaiming. Manufacturers may use the tool to improve their ecological embeddedness, and sector-based circularity levels may be established for policy development. The novelty of the tool is in the use of ecological relationships to support achievement of a circular economy.
DOI: 10.17028/rd.lboro.19739410.v1
title: Supplementary information files for A circularity indicator tool for measuring the ecological embeddedness of manufacturing

description: Supplementary information files for article A circularity indicator tool for measuring the ecological embeddedness of manufacturing <br> Circularity in manufacturing is critical to reducing raw material usage and waste. Ecological embeddedness examines circular relationships intended to benefit both economic actors and the natural environment. By understanding circular relationships in the value chain, manufacturers can formulate strategies that are eco-effective. This work develops and validates an original circularity tool to measure the ecological embeddedness of manufacturers using exploratory and confirmatory factor analysis. The tool is tested on process manufacturers selling products in the United Kingdom. The three main results are that the tool is useful and comprehensive (87% of users), enables simple comparisons with competitors, and identifies weaknesses in strategies related to the five dimensions connecting manufacturers, consumers, and the environment: understanding, realising, utilising, negotiating, and reclaiming. Manufacturers may use the tool to improve their ecological embeddedness, and sector-based circularity levels may be established for policy development. The novelty of the tool is in the use of ecological relationships to support achievement of a circular economy.
DOI: 10.6084/m9.figshare.19782406
title: Code and data to reproduce "Epidemic time series similarity is related to geographic distance and age structure"

description: This repository contains code and data to reproduce the analyses from <br> <br> &gt; Dallas, TA, G Foster, R Richards, B Elderd. 2022. Epidemic time series similarity is related to geographic distance and age structure. <br> <br> The code to analyze and reproduce manuscript figures is all contained in the `analysis.Rmd` file, which contains the R code. This code loads the most current epidemic time series data, allowing the analyses to be re-run as more data are added. The main text considers the period between Jan 22, 2020 and May 9, 2022. A copy of these data are provided as `time_series_covid19_confirmed_US.csv` for reproducibility.<br> <br> We rely on a couple of other data sources, including data from the US Census Burueau (`county-pop-data.csv`) and estimates of R0 (`Ives&BozzutoTableS113Oct20.csv`) from <br> <br> &gt; Ives, Anthony R., and Claudio Bozzuto. "Estimating and explaining the spread of COVID-19 at the county level in the USA." Communications biology 4.1 (2021): 1-9.<br> <br>
DOI: 10.25573/data.10042424.v16
title: Barro Colorado Island, Lutz tower 20m_Relative Humidity

description: Barro Colorado Island (BCI), Lutz catchment towerLocation 9°9'42.36"N, 79°50'15.67"W<br>Relative humidity, electronic sensor, interval max/min/avg<br>Lutz catchment is a 9.73ha protected watershed on BCIThe Lutz tower was built in 1972 and was originally 42m. In 2002 it was increased to 48m<br>
DOI: 10.25573/data.10042433.v18
title: Barro Colorado Island, Lutz tower 42m_Air Temperature

description: Barro Colorado Island (BCI), Lutz catchment towerLocation 9°9'42.36"N, 79°50'15.67"W<br>Air temperature, electronic sensor, interval max/min/avg<br>Lutz catchment is a 9.73ha protected watershed on BCIThe Lutz tower was built in 1972 and was originally 42m. In 2002 it was increased to 48m<br>
DOI: 10.6084/m9.figshare.19782550
title: JAKEE Pharmacodynamic Data

description: Flow cytometry-based pharmacodynamic source data to accompany the primary results in the mansucript.
DOI: 10.6084/m9.figshare.19782550.v1
title: JAKEE Pharmacodynamic Data

description: Flow cytometry-based pharmacodynamic source data to accompany the primary results in the mansucript.
DOI: 10.5281/zenodo.6561236
title: Atmospheric resonant production for light dark sectors

description: This is the companion dataset to the publication "<em>Atmospheric resonant production for light dark sectors</em>" by the same author. It includes the track length fluxes for electrons, positrons and photons generated by cosmic ray showers, as well as light mesons fluxes obtained by the same process. An example python loader is provided.
description: The fluxes are given integrated over an hemisphere.
DOI: 10.5281/zenodo.6561235
title: Atmospheric resonant production for light dark sectors

description: This is the companion dataset to the publication "<em>Atmospheric resonant production for light dark sectors</em>" by the same author. It includes the track length fluxes for electrons, positrons and photons generated by cosmic ray showers, as well as light mesons fluxes obtained by the same process. An example python loader is provided.
description: The fluxes are given integrated over an hemisphere.
DOI: 10.25573/data.10042400.v19
title: Barro Colorado Island, Lutz tower 1m_Relative Humidity

description: Barro Colorado Island (BCI), Lutz catchment tower, 1mLocation 9°9'42.36"N, 79°50'15.67"W<br>Relative Humidity, electronic sensor, interval max/min/avg<br>Lutz catchment is a 9.73ha protected watershed on BCIThe Lutz tower was built in 1972 and was originally 42m. In 2002 it was increased to 48m<br>
DOI: 10.25573/data.10042418.v19
title: Barro Colorado Island, Lutz tower 48m_Relative Humidity

description: Barro Colorado Island (BCI), Lutz catchment towerLocation 9°9'42.36"N, 79°50'15.67"W<br>Relative humidity, electronic sensor, interval max/min/avg<br>Lutz catchment is a 9.73ha protected watershed on BCIThe Lutz tower was built in 1972 and was originally 42m. In 2002 it was increased to 48m<br>
DOI: 10.25573/data.10042394.v20
title: Barro Colorado Island, Lutz tower 1m_Air Temperature

description: Barro Colorado Island (BCI), Lutz catchment towerLocation 9°9'42.36"N, 79°50'15.67"W<br>Air temperature, electronic sensor, interval max/min/avg<br>Lutz catchment is a 9.73ha protected watershed on BCIThe Lutz tower was built in 1972 and was originally 42m. In 2002 it was increased to 48m<br>
DOI: 10.17028/rd.lboro.19732648.v1
title: Supplementary information for article Effects of Surface Chemistry Interaction on Primary Neural Stem Cell Neurosphere Responses

description: Supplementary Information files for Effects of Surface Chemistry Interaction on Primary Neural Stem Cell Neurosphere Responses <br> The characteristics of a material’s surface are extremely important when considering their interactions with biological species. Despite surface chemistry playing a critical role in mediating the responses of cells, there remains no single rule which dictates absolute performance; this is particularly challenging when considering the response of differing cell types to a range of materials. Here, we highlight the functional behavior of neural stem cells presented as neurospheres, with respect to a range of alkane-based self-assembled monolayers presenting different functional groups: OH, CO<sub>2</sub>H, NH<sub>2</sub>, phenyl, CH<sub>3</sub>, SH, and laminin. The influence of chemical cues was examined in terms of neurosphere spreading on each of these defined surfaces (cell adhesion and migration capacity) and neuronal versus glial marker expression. Measurements were made over a time series of 3, 5, and 7 days, showing a dynamic nature to the initial responses observed after seeding. While OH surfaces presented an excellent platform for glial migration, larger proportions of cells expressing neuronal β<sub>3</sub>-tubulin were found on SH- and laminin-coated surfaces. Axonal elongation was found to be initially similar on all surfaces with neurite lengths having a wider spread predominantly on NH<sub>2</sub>- and laminin-presenting surfaces. A generalized trend could not be found to correlate cellular responses with surface wettability, lipophilicity (log <em>P</em>), or charge/ionizability (p<em>K</em>a). These results highlight the potential for chemical cues to direct primary neural stem cell responses in contact with the defined materials. New biomaterials which control specific cell culture characteristics <em>in vitro</em> will streamline the up-scale manufacture of cellular therapies, with the enrichment of the required populations resulting from a defined material interaction.
DOI: 10.17028/rd.lboro.19732648
title: Supplementary information for article Effects of Surface Chemistry Interaction on Primary Neural Stem Cell Neurosphere Responses

description: Supplementary Information files for Effects of Surface Chemistry Interaction on Primary Neural Stem Cell Neurosphere Responses <br> The characteristics of a material’s surface are extremely important when considering their interactions with biological species. Despite surface chemistry playing a critical role in mediating the responses of cells, there remains no single rule which dictates absolute performance; this is particularly challenging when considering the response of differing cell types to a range of materials. Here, we highlight the functional behavior of neural stem cells presented as neurospheres, with respect to a range of alkane-based self-assembled monolayers presenting different functional groups: OH, CO<sub>2</sub>H, NH<sub>2</sub>, phenyl, CH<sub>3</sub>, SH, and laminin. The influence of chemical cues was examined in terms of neurosphere spreading on each of these defined surfaces (cell adhesion and migration capacity) and neuronal versus glial marker expression. Measurements were made over a time series of 3, 5, and 7 days, showing a dynamic nature to the initial responses observed after seeding. While OH surfaces presented an excellent platform for glial migration, larger proportions of cells expressing neuronal β<sub>3</sub>-tubulin were found on SH- and laminin-coated surfaces. Axonal elongation was found to be initially similar on all surfaces with neurite lengths having a wider spread predominantly on NH<sub>2</sub>- and laminin-presenting surfaces. A generalized trend could not be found to correlate cellular responses with surface wettability, lipophilicity (log <em>P</em>), or charge/ionizability (p<em>K</em>a). These results highlight the potential for chemical cues to direct primary neural stem cell responses in contact with the defined materials. New biomaterials which control specific cell culture characteristics <em>in vitro</em> will streamline the up-scale manufacture of cellular therapies, with the enrichment of the required populations resulting from a defined material interaction.
DOI: 10.25573/data.10042409.v20
title: Barro Colorado Island, Lutz tower 20m_Air Temperature

description: Barro Colorado Island (BCI), Lutz catchment towerLocation 9°9'42.36"N, 79°50'15.67"W<br>Air temperature, electronic sensor, interval max/min/avg<br>Lutz catchment is a 9.73ha protected watershed on BCIThe Lutz tower was built in 1972 and was originally 42m. In 2002 it was increased to 48m<br>
DOI: 10.17028/rd.lboro.19732216
title: Supplementary information files for Redistribution and beliefs about the source of income inequality

description: Supplementary information for article Redistribution and beliefs about the source of income inequality <br> Previous literature demonstrates that beliefs about the determinants of income inequality play a major role in individual support for income redistribution. This study investigates how people form beliefs regarding the extent to which work versus luck determines income inequality. Specifically, I examine whether people form self-serving beliefs to justify supporting personally advantageous redistributive policies. I use a laboratory experiment where I directly measure beliefs and manipulate the incentives to engage in self-deception. I first replicate earlier results demonstrating that (1) people attribute income inequality to work when they receive a high income and to luck when they receive a low income and (2) their beliefs about the source of income inequality influence their preferences over redistributive policies. However, I do not find that people’s beliefs about the causes of income inequality are further influenced by self-serving motivations based on a desire to justify favorable redistributive policies. I conclude that, in my experiment, self-serving beliefs about the causes of income inequality are driven primarily by overconfidence and self-image concerns and not to justify favorable redistributive policies.
DOI: 10.25573/data.10042442.v20
title: Barro Colorado Island, Lutz tower 48m_Air Temperature

description: Barro Colorado Island (BCI), Lutz catchment towerLocation 9°9'42.36"N, 79°50'15.67"W<br>Air temperature, electronic sensor, interval max/min/avg<br>Lutz catchment is a 9.73ha protected watershed on BCIThe Lutz tower was built in 1972 and was originally 42m. In 2002 it was increased to 48m<br>
DOI: 10.17028/rd.lboro.19732216.v1
title: Supplementary information files for Redistribution and beliefs about the source of income inequality

description: Supplementary information for article Redistribution and beliefs about the source of income inequality <br> Previous literature demonstrates that beliefs about the determinants of income inequality play a major role in individual support for income redistribution. This study investigates how people form beliefs regarding the extent to which work versus luck determines income inequality. Specifically, I examine whether people form self-serving beliefs to justify supporting personally advantageous redistributive policies. I use a laboratory experiment where I directly measure beliefs and manipulate the incentives to engage in self-deception. I first replicate earlier results demonstrating that (1) people attribute income inequality to work when they receive a high income and to luck when they receive a low income and (2) their beliefs about the source of income inequality influence their preferences over redistributive policies. However, I do not find that people’s beliefs about the causes of income inequality are further influenced by self-serving motivations based on a desire to justify favorable redistributive policies. I conclude that, in my experiment, self-serving beliefs about the causes of income inequality are driven primarily by overconfidence and self-image concerns and not to justify favorable redistributive policies.
DOI: 10.6084/m9.figshare.19782547
title: AE Tables

description: Table of AE's
DOI: 10.25573/data.10042430.v17
title: Barro Colorado Island, Lutz tower 48m_Wind Direction

description: Barro Colorado Island (BCI), Lutz catchment towerLocation 9°9'42.36"N, 79°50'15.67"W<br>Direction, Interval, mean vector<br>Lutz catchment is a 9.73ha protected watershed on BCIThe Lutz tower was built in 1972 and was originally 42m. In 2002 it was increased to 48m<br>The data from 48m should be considered a separate data series from the data at 42m. Wind may have been affected by the distance to the top of the canopy.
DOI: 10.25573/data.10042427.v17
title: Barro Colorado Island, Lutz tower 48m_Wind Speed

description: Barro Colorado Island (BCI), Lutz catchment towerLocation 9°9'42.36"N, 79°50'15.67"W<br>Wind speed, electronic sensor, interval max/min/avg<br>Lutz catchment is a 9.73ha protected watershed on BCIThe Lutz tower was built in 1972 and was originally 42m. In 2002 it was increased to 48m<br>The data from 48m should be considered a separate data series from the data at 42m. Wind speed is significantly higher at 48m due to the distance to the top of the canopy.<br>
DOI: 10.25573/data.10042406.v16
title: Barro Colorado Island, Lutz tower 48m_Solar Radiation, Pyranometer

description: Barro Colorado Island (BCI), Lutz catchment tower 42m & 48m<br>Location 9°9'42.36"N, 79°50'15.67"W<br>Solar Radiation, Pyranometer, interval max/min/avg<br>Lutz catchment is a 9.73ha protected watershed on BCIThe Lutz tower was built in 1972 and was originally 42m. In 2002 it was increased to 48m<br>Data from 42m and 48m can be considered to be one series since the change from 42m to 48m should not have affected the measurements<br>
DOI: 10.25573/data.10042463.v18
title: Barro Colorado Island, Clearing_Precipitation

description: Barro Colorado Island (BCI), Clearing ('El Claro')Location: 9°9'47.21"N, 79°50'17.64"W<br>Precipitation, electronic, Interval totals<br><br>The Clearing is a small, open area surrounded by forest and some buildings. Station established in 1972. Consists of a Stevenson screen with max/min thermometers and air pressure sensor. Temperature/humidity sensor, rain gauge and evaporation sensors are located at various locations around the screen.<br>