cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22008/fk2/snx8l6/ejz8ns
title: 2019-06-18.tif

description: :unav
DOI: 10.22008/fk2/snx8l6/zqcfr0
title: 2019-07-14.tif

description: :unav
DOI: 10.22008/fk2/snx8l6/ux5qzb
title: 2018-06-20.tif

description: :unav
DOI: 10.22008/fk2/snx8l6/aae0s9
title: 2018-10-01.tif

description: :unav
DOI: 10.22008/fk2/snx8l6/hnxmrp
title: 2018-05-20.tif

description: :unav
DOI: 10.22008/fk2/snx8l6/wuxhzr
title: 2019-08-09.tif

description: :unav
DOI: 10.22008/fk2/snx8l6/7vnrhw
title: 2018-06-29.tif

description: :unav
DOI: 10.22008/fk2/snx8l6/ijbvjm
title: 2019-10-06.tif

description: :unav
DOI: 10.22008/fk2/snx8l6/9u3q9q
title: 2019-08-16.tif

description: :unav
DOI: 10.18112/openneuro.ds003591.v1.0.0
title: Neurocognitive aging data release with behavioral, structural, and multi-echo functional MRI measures
DOI: 10.6084/m9.figshare.3761562.v1820
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.14336861
title: AFM Data in ASCI codes

description: Atomic force microscopy data recorded in Ringing mode on two cell lines of human colorectal epithelial cancer of different cancer aggressiveness.
DOI: 10.6084/m9.figshare.14336861.v1
title: AFM Data in ASCI codes

description: Atomic force microscopy data recorded in Ringing mode on two cell lines of human colorectal epithelial cancer of different cancer aggressiveness.
DOI: 10.17608/k6.auckland.13551728.v1
title: SUPPLEMENTAL DATA FOR TARAWERA 1886: AN INTEGRATED REVIEW OF VOLCANOLOGICAL AND GEOCHEMICAL CHARACTERISTICS OF A COMPLEX BASALTIC ERUPTION

description: This online supplement includes 6 additional figures, 10 data tables, and a extended analytical methodology to supplement the manuscript "TARAWERA 1886: AN INTEGRATED REVIEW OF VOLCANOLOGICAL AND GEOCHEMICAL CHARACTERISTICS OF A COMPLEX BASALTIC ERUPTION" Submitted for publication to the New Zealand Journal of Geology and Geophysics.<br>
DOI: 10.17608/k6.auckland.13551728
title: SUPPLEMENTAL DATA FOR TARAWERA 1886: AN INTEGRATED REVIEW OF VOLCANOLOGICAL AND GEOCHEMICAL CHARACTERISTICS OF A COMPLEX BASALTIC ERUPTION

description: This online supplement includes 6 additional figures, 10 data tables, and a extended analytical methodology to supplement the manuscript "TARAWERA 1886: AN INTEGRATED REVIEW OF VOLCANOLOGICAL AND GEOCHEMICAL CHARACTERISTICS OF A COMPLEX BASALTIC ERUPTION" Submitted for publication to the New Zealand Journal of Geology and Geophysics.<br>
DOI: 10.17608/k6.auckland.13551728.v3
title: SUPPLEMENTAL DATA FOR TARAWERA 1886: AN INTEGRATED REVIEW OF VOLCANOLOGICAL AND GEOCHEMICAL CHARACTERISTICS OF A COMPLEX BASALTIC ERUPTION

description: This online supplement includes 6 additional figures, 10 data tables, and a extended analytical methodology to supplement the manuscript "TARAWERA 1886: AN INTEGRATED REVIEW OF VOLCANOLOGICAL AND GEOCHEMICAL CHARACTERISTICS OF A COMPLEX BASALTIC ERUPTION" Submitted for publication to the New Zealand Journal of Geology and Geophysics.<br>
DOI: 10.17608/k6.auckland.13551728.v2
title: SUPPLEMENTAL DATA FOR TARAWERA 1886: AN INTEGRATED REVIEW OF VOLCANOLOGICAL AND GEOCHEMICAL CHARACTERISTICS OF A COMPLEX BASALTIC ERUPTION

description: This online supplement includes 6 additional figures, 10 data tables, and a extended analytical methodology to supplement the manuscript "TARAWERA 1886: AN INTEGRATED REVIEW OF VOLCANOLOGICAL AND GEOCHEMICAL CHARACTERISTICS OF A COMPLEX BASALTIC ERUPTION" Submitted for publication to the New Zealand Journal of Geology and Geophysics.<br>
DOI: 10.6084/m9.figshare.14330795.v2
title: An Immune Cell Atlas Reveals Dynamic COVID-19 Specific Neutrophil Programming Amendable to Therapy

description: SARS-CoV-2 is a novel coronavirus that causes acute respiratory distress syndrome (ARDS) and death. Innate immune cells are critical for host defense but are also the primary drivers of acute respiratory distress syndrome. The relationships between innate cellular responses in ARDS resulting from COVID-19 compared to other causes of ARDS, such as bacterial sepsis is unclear. Moreover, the beneficial cellular effects of dexamethasone therapy during severe COVID-19 remains speculative but understanding their mechanistic effects could improve rationally targeted drug design. We discovered that compared to bacterial septic ARDS, COVID-19 induced distinct neutrophil polarization characterized by either interferon (IFN) or prostaglandin (PG) active states. IFN polarization required the transcriptional regulators PRDM1, STAT1 and IRF1 while prostaglandin polarization was induced by E2F4. Bacterial ARDS neutrophils upregulated antibacterial molecules such as PLAC8 via STAT5b and demonstrated conventional transcription factors CEBPA and CEBPB. Steroid therapy rapidly altered IFN polarization, downregulated interferon responsive genes, and induced immunoretrained neutrophils withelevations of the decoy IL-1R2 regulatory receptor. Steroids induced the emergence of immature neutrophils expressing immunosuppressive molecules ARG1 and ANXA1. Moreover, steroids remodeled global cellular communication hierarchies by changing neutrophils from information receivers into information providers. Importantly, male patients had higher proportions of IFN-active neutrophils and a greater degree of steroid induced attenuation of cellular polarization. Indeed, the highest proportion of IFN-active neutrophils was associated with mortality. These results define neutrophil states unique to COVID-19 when contextualized to other life-threatening infections, thereby enhancing the relevance of our findings at the bedside. Furthermore, the clinical benefits of dexamethasone therapy are molecularly defined, and this information highlights essential molecular pathways to which improved therapeutic targeting can now be conceived.<br>
DOI: 10.34740/kaggle/dsv/2069236
title: Iron Age Archaelogical Sites of Turkey
DOI: 10.13012/b2idb-5471143_v1
title: Translocated nuisance American black bear capture histories

description: These data were used in the survival and cause-specific mortality analyses of translocated nuisance American black bear in Wisconsin published in Animal Conservation (Bauder, J.M., N.M. Roberts, D. Ruid, B. Kohn, and M.L. Allen. Accepted. Lower survival of nuisance American black bears (Ursus americanus) is not due to translocation. Animal Conservation). Included are CSV files including each bear's capture history and associated covariates and meta-data for each CSV file. Also included is an example R script of how to conduct the analyses (this R script is also included as supporting information with the published paper).
DOI: 10.5281/zenodo.4646262
title: Molecular dynamics simulations of GTPase associated center

description: Unbiased molecular dynamics simulations with different ionic solutions and metadynamics simulations of the GTPase-associated center. See also https://arxiv.org/abs/2103.04964 and https://github.com/bussilab/saxs-md-gac
description: {"references": ["arXiv:2103.04964"]}
DOI: 10.5281/zenodo.4646261
title: Molecular dynamics simulations of GTPase associated center

description: Unbiased molecular dynamics simulations with different ionic solutions and metadynamics simulations of the GTPase-associated center. See also https://arxiv.org/abs/2103.04964 and https://github.com/bussilab/saxs-md-gac
description: {"references": ["arXiv:2103.04964"]}
DOI: 10.34740/kaggle/dsv/2069310
title: Iron Age Archaelogical Sites of Turkey
DOI: 10.34740/kaggle/dsv/2069314
title: US counties COVID 19 dataset
DOI: 10.13012/b2idb-3388479_v1
title: Simulated Land Allocation, Nitrogen Use, and Nitrogen Loss in the Mississippi Atchafalaya River Basin for Various RFS2 (Renewable Fuel Standard) Policy Scenarios

description: Total nitrogen leaching rates were calculated over the Mississippi Atchafalaya River Basin (MARB) using an integrated economic-biophysical modeling approach. Land allocation for corn production and total nitrogen application rates were calculated for crop reporting districts using the Biofuel and Environmental Policy Analysis Model (BEPAM) for 5 RFS2 policy scenarios. These were used as input in the Integrated BIosphere Simulator-Agricultural Version (Agro-IBIS) and the Terrestrial Hydrologic Model with Biogeochemistry (THMB) to calculate the nitrogen loss. Land allocation and total nitrogen application simulations were simulated for the period 2016-2030 for 303 crop reporting districts (https://www.nass.usda.gov/Data_and_Statistics/County_Data_Files/Frequently_Asked_Questions/county_list.txt). The final 2030 values are reported here. Both are stored in csv files. Units for land allocation are million ha and nitrogen application are million kg. The nitrogen leaching rates were modeled with a spatial resolution of 5' x 5' using the North American Datum of 1983 projection and stored in NetCDF files. The 30-year average is calculated over the last 30 years of the 45 years being simulated. Leaching rates are calculated in kg-N/ha.
DOI: 10.13012/b2idb-3047783_v1
title: Southeastern South America Soil Moisture Alteration Experiment Using CESM2

description: This dataset contains model output from the Community Earth System Model, Version 2 (CESM2; Danabasoglu et al. 2020). These data were used for analysis in Impacts of Large-Scale Soil Moisture Anomalies in Southeastern South America, published in the Journal of Hydrometeorology (DOI: 10.1175/JHM-D-20-0116.1). See this publication for details of the model simulations that created these data. Four NetCDF (.nc) files are included in this dataset. Two files correspond to the control simulation (FHIST_SP_control) and two files correspond to a simulation with a dry soil moisture anomaly imposed in southeastern South America (FHIST_SP_dry; see the publication mentioned in the preceding paragraph for details on the spatial extent of the imposed anomaly). For each simulation, one file corresponds to output from the atmospheric model (file names with "cam") of CESM2 and the other to the land model (file names with "clm2"). These files are raw CESM output concatenated into a single file for each simulation. All files include data from 1979-01-02 to 2003-12-31 at a daily resolution. The spatial resolution of all files is about 1 degree longitude x 1 degree latitude. Variables included in these files are listed or linked below. Variables in atmosphere model output: Vertical velocity (omega) Convective precipitation Large-scale precipitation Surface pressure Specific humidity Temperature (atmospheric profile) Reference temperature (temp. at reference height, 2 meters in this case) Zonal wind Meridional wind Geopotential height Variables in land model output: See https://www.cesm.ucar.edu/models/cesm1.2/clm/models/lnd/clm/doc/UsersGuide/history_fields_table_40.xhtml Note that not all of the variables listed at the above link are included in the land model output files in this dataset. This material is based upon work supported by the National Science Foundation under Grant No. 1454089. We acknowledge high-performance computing support from Cheyenne (doi:10.5065/D6RX99HX) provided by NCAR's Computational and Information Systems Laboratory, sponsored by the National Science Foundation. The CESM project is supported primarily by the National Science Foundation. We thank all the scientists, software engineers, and administrators who contributed to the development of CESM2. References Danabasoglu, G., and Coauthors, 2020: The Community Earth System Model Version 2 (CESM2). Journal of Advances in Modeling Earth Systems, 12, e2019MS001916, https://doi.org/10.1029/2019MS001916.
DOI: 10.13012/b2idb-1751983_v1
title: Food selection by spring-migrating green-winged teal 2016-2018

description: The file contains biomass and count data of food items encountered in the digestive tract of collected green-winged teal from the Illinois River Valley during spring 2016-2018. The file also contains biomass of food items collected from core samples collected at sites where the green-winged teal were collected. Together, the consumed and availability food data are used to calculate diet selection. The data also contains information on the teal, collection, sites, and other covariates used in analysis. Lastly, the dataset contains biomass of food items collected in medium (#35) and small (#60) sieves for 2018 core samples.
DOI: 10.21227/jmhx-kb29
title: February-1-Tang-Wenyuan.csv

description: February-1-Tang-Wenyuan.csv
DOI: 10.13012/b2idb-2418574_v1
title: Data From: "Comparing Methods for Species Tree Estimation With Gene Duplication and Loss"

description: Data sets from "Comparing Methods for Species Tree Estimation With Gene Duplication and Loss." It contains data simulated with gene duplication and loss under a variety of different conditions.
DOI: 10.13012/b2idb-4644759_v1
title: Data for Allometric scaling and growth: evaluation and applications in subadult body mass estimation

description: Femoral skeletal traits (cross-sectional properties, maximum distal metaphyseal breadth of the femur, and maximum superior/inferior femoral head diameter) of 219 Taiwanese subadult individuals (aged 0 to 17) as used in the manuscript "Allometric scaling and growth: evaluation and applications in subadult body mass estimation."
DOI: 10.13012/b2idb-9209722_v1
title: Video: Agkistrodon contortrix combat behavior

description: Video recorded by Louise Barker using a Cannon Powershot camera documents late-season combat behavior in Agkistrodon contortrix. Recorded in Beaufort County, North Carolina, 11.1 km SE of downtown Washington on 21 October 2020.
DOI: 10.13012/b2idb-6565690_v1
title: ApproxTuner DNN Models

description: DNN weights used in the evaluation of the ApproxTuner system. Link to paper: https://dl.acm.org/doi/10.1145/3437801.3446108
DOI: 10.5281/zenodo.4646313
title: AndroR2: A Dataset of Manually-Reproduced Bug Reports for Android apps

description: AndroR2 is a dataset of 90 manually reproduced bug reports for Android apps listed on Google Play and hosted on GitHub, systematically collected via an in-depth analysis of 459 reports extracted from the GitHub issue tracker. For each reproduced report, AndroR2 includes the original bug report, an apk file for the buggy version of the app, an executable reproduction script, and metadata regarding the quality of the reproduction steps associated with the original report. We believe that the AndroR2 dataset can be used to facilitate research in automatically analyzing, understanding, reproducing, localizing, and fixing bugs for mobile applications as well as other software maintenance activities more broadly.
DOI: 10.5281/zenodo.4646312
title: AndroR2: A Dataset of Manually-Reproduced Bug Reports for Android apps

description: AndroR2 is a dataset of 90 manually reproduced bug reports for Android apps listed on Google Play and hosted on GitHub, systematically collected via an in-depth analysis of 459 reports extracted from the GitHub issue tracker. For each reproduced report, AndroR2 includes the original bug report, an apk file for the buggy version of the app, an executable reproduction script, and metadata regarding the quality of the reproduction steps associated with the original report. We believe that the AndroR2 dataset can be used to facilitate research in automatically analyzing, understanding, reproducing, localizing, and fixing bugs for mobile applications as well as other software maintenance activities more broadly.
DOI: 10.6084/m9.figshare.14336921
title: Table S3 Beach Productivity

description: Supplementary Table. Report wave exposure and nest productivity by nesting beach from 2016 to 2019 used in Ware et al. (2021) Exposure of loggerhead sea turtle nests to waves in the Florida Panhandle.
DOI: 10.6084/m9.figshare.14336921.v1
title: Table S3 Beach Productivity

description: Supplementary Table. Report wave exposure and nest productivity by nesting beach from 2016 to 2019 used in Ware et al. (2021) Exposure of loggerhead sea turtle nests to waves in the Florida Panhandle.
DOI: 10.6084/m9.figshare.14336912
title: Table S2 Beach Descriptions

description: Supplementary Table. Additional data describing the 40 nesting beaches comprising the Florida portion of the Northern Gulf of Mexico Loggerhead Recovery Unit. Used in Ware et al. (2021) Exposure of loggerhead sea turtle nests to waves in the Florida Panhandle.<br>
DOI: 10.6084/m9.figshare.14336912.v1
title: Table S2 Beach Descriptions

description: Supplementary Table. Additional data describing the 40 nesting beaches comprising the Florida portion of the Northern Gulf of Mexico Loggerhead Recovery Unit. Used in Ware et al. (2021) Exposure of loggerhead sea turtle nests to waves in the Florida Panhandle.<br>
DOI: 10.6084/m9.figshare.14336888
title: Table S1 LiDAR and Imagery Metadata

description: Supplementary Table. Metadata for the 23 LiDAR surveys used to create a temporally- and spatially-averaged digital elevation model of nesting beach in the Florida Panhandle. Used in Ware et al. (2021) Exposure of loggerhead sea turtle nests to waves in the Florida Panhandle.
DOI: 10.6084/m9.figshare.14336888.v1
title: Table S1 LiDAR and Imagery Metadata

description: Supplementary Table. Metadata for the 23 LiDAR surveys used to create a temporally- and spatially-averaged digital elevation model of nesting beach in the Florida Panhandle. Used in Ware et al. (2021) Exposure of loggerhead sea turtle nests to waves in the Florida Panhandle.
DOI: 10.5281/zenodo.4646321
title: Finite fault models of the 2019 Ridgecrest (California, USA) earthquakes

description: Coseismic surface displacements and dislocation models of the 2019 Ridgecrest earthquakes
description: {"references": ["Jin, Z. and Y. Fialko, Finite slip models of the 2019 Ridgecrest earthquake sequence constrained by space geodetic data and aftershock locations, Bull. Seismol. Soc. Am., 110 (4), 1660\u20131679, 2020."]}
DOI: 10.5281/zenodo.4646320
title: Finite fault models of the 2019 Ridgecrest (California, USA) earthquakes

description: Coseismic surface displacements and dislocation models of the 2019 Ridgecrest earthquakes
description: {"references": ["Jin, Z. and Y. Fialko, Finite slip models of the 2019 Ridgecrest earthquake sequence constrained by space geodetic data and aftershock locations, Bull. Seismol. Soc. Am., 110 (4), 1660\u20131679, 2020."]}
DOI: 10.5281/zenodo.4646325
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Abdhiel Arnaldo Bustamante-Navarrete, https://orcid.org/0000-0001-8120-1274. Claims were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
DOI: 10.5281/zenodo.4633623
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Abdhiel Arnaldo Bustamante-Navarrete, https://orcid.org/0000-0001-8120-1274. Claims were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
DOI: 10.6073/pasta/9d6e3ca80e39b99b0039aee5e730231f
title: SBC LTER: Reef: Kelp Forest Community Dynamics: Cover of bottom substrate and sand depth

description: These data describe the percent cover of eight bottom substrate types as determined by a uniform point contact method. The type of bottom substrate is recorded at 80 uniformly spaced points along permanent 40m x 2m transects. Percent cover of each substrate type on a transect is estimated as the proportion of the 80 points contacted by that substrate type x 100. In cases where the substrate type is sand, the depth of the sand is measured. These data are part of the SBC LTER’s time series observations of kelp forest dynamics, which began in 2000 and was designed to track long-term patterns in species abundance and diversity of reef-associated organisms in the Santa Barbara Channel, California, USA. The sampling locations in this dataset include nine reef sites along the mainland coast of the Santa Barbara Channel and two on the north side of Santa Cruz Island. These 11 sites were chosen to reflect the wide range of oceanographic conditions present in the Channel and proximity to sources of terrestrial runoff. Data are collected at each site once per year in summer and this dataset is updated annually. The time period of data collection varied among the 11 reef sites. Sampling at BULL, CARP, and NAPL began in 2000, sampling at the other 6 mainland sites (AHND, AQUE, IVEE, GOLB, ABUR, MOHK) began in 2001 (transects 3, 5, 6, 7, 8 at IVEE were added in 2011). Data collection at the two Santa Cruz Island sites (SCTW and SCDI) began in 2004. The two tables in this data package include: 1) The percent cover of eight bottom substrate types; and 2) the sand depth of each sampling point (sand depth = 0 if substrate type ≠sand).
DOI: 10.6073/pasta/7b55f68d7908368e923b966eb08afb12
title: SBC LTER: Reef: Long-term experiment: Kelp removal: Cover of bottom substrate and sand depth

description: These data describe the percent cover of eight bottom substrate types as determined by a uniform point contact method. The type of bottom substrate is recorded at 80 uniformly spaced points along permanent 40m x 2m transects. Percent cover of each substrate type on transect is estimated as the proportion of the 80 points contacted by the substrate type x 100. The kelp removal experiment was initiated in 2008 at selected reef sites along the mainland coast of the Santa Barbara Channel. The following three giant kelp manipulations are maintained in sampling plots at each site: - Control: Macrocystis pyriferais left intact during the experiment. - Annual removal: Macrocystis pyriferais removed from an adjacent plot once each winter and allowed to re-colonize over the course of the year. - Continuous removal: Macrocystis pyriferais removed from the plot on each sampling date. The two tables in this data package include: 1) The percent cover of eight bottom substrate types; and 2) the sand depth of each sampling point (sand depth = 0 if substrate type ≠sand)
DOI: 10.25345/c5dj61
title: MassIVE MSV000087124 - Proteomics on healthy and failed honey bee queen ovaries
title: We sampled honey bee queens from beekeepers throughout British Columbia which were rated as either 'failed' or 'healthy' by beekeepers. We performed shot-gun proteomics on the ovary. Proteins were reduced, alkylated, and digested with Lys-C for 4 h in urea digestion buffer. The sample was then diluted 4x with ammonium bicarbonate and digested overnight with trypsin. Peptides were analyzed by an EASY-nLC 1000 liquid chromatography system coupled to a Bruker Impact II mass spectrometer. Data were searched with MaxQuant and the zipped txt folder output is provided. Metadata file includesRT-qPCR absolute virus quantitation.
DOI: 10.6084/m9.figshare.14336702
title: olsson_2016_mouse_blood

description: olsson 2016 scRNA-seq dataset stored in h5ad
DOI: 10.6084/m9.figshare.14336702.v1
title: olsson_2016_mouse_blood

description: olsson 2016 scRNA-seq dataset stored in h5ad