cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6870063
title: PNS-Cyst-Count-Artifical: images of controlled number of nematode cysts with orgnic debris

description: Data collected by the PheNeSens (Phenotyping of Nematodes with Sensors) project. The images recorded cysts of sugar beet nematode, together with organic debris from the soil sample, left after the soil processing. This dataset was generated by manually picking nematode cysts into organic debris, so that the cyst count is known and controlled. A total of 6x8=48 samples were synthesized. Each sample contains 30 images. We also collected images of real soil samples, which is available from the links: https://zenodo.org/record/6861775 https://zenodo.org/record/6861814 For details of the data collection and deep learning model training, refer to our paper: Chen L, Daub M, Luigs H-G, Jansen M, Strauch M and Merhof D (2022) High-throughput phenotyping of nematode cysts. Front. Plant Sci. 13:965254. doi: 10.3389/fpls.2022.965254 [link]
DOI: 10.6084/m9.figshare.21117007
title: RiceG2G_Basicdata2

description: Rice NAM population, scoring for each variant site.
DOI: 10.6084/m9.figshare.21117116.v1
title: Additional file 1 of ‘The baby will have the right beginning’: a qualitative study on mother and health worker views on point-of-care HIV birth testing across 10 sites in Zimbabwe

description: Additional file 1.
DOI: 10.6084/m9.figshare.21117116
title: Additional file 1 of ‘The baby will have the right beginning’: a qualitative study on mother and health worker views on point-of-care HIV birth testing across 10 sites in Zimbabwe

description: Additional file 1.
DOI: 10.6084/m9.figshare.21117113
title: Additional file 4 of Using single-worm RNA sequencing to study C. elegans responses to pathogen infection

description: Additional file 4: Table S3. Enriched biological processes revealed by standard RNA-seq relative to single-worm RNA-seq.
DOI: 10.6084/m9.figshare.21117113.v1
title: Additional file 4 of Using single-worm RNA sequencing to study C. elegans responses to pathogen infection

description: Additional file 4: Table S3. Enriched biological processes revealed by standard RNA-seq relative to single-worm RNA-seq.
DOI: 10.6084/m9.figshare.21117119
title: Additional file 5 of Using single-worm RNA sequencing to study C. elegans responses to pathogen infection

description: Additional file 5: Table S4. Enriched biological processes revealed by single-worm RNA-seq relative to standard RNA-seq.
DOI: 10.6084/m9.figshare.21117119.v1
title: Additional file 5 of Using single-worm RNA sequencing to study C. elegans responses to pathogen infection

description: Additional file 5: Table S4. Enriched biological processes revealed by single-worm RNA-seq relative to standard RNA-seq.
DOI: 10.6084/m9.figshare.21117122
title: Additional file 6 of Using single-worm RNA sequencing to study C. elegans responses to pathogen infection

description: Additional file 6: Table S5. Enriched biological processes revealed by single-worm RNA-seq (infected samples relative to uninfected samples).
DOI: 10.6084/m9.figshare.21117122.v1
title: Additional file 6 of Using single-worm RNA sequencing to study C. elegans responses to pathogen infection

description: Additional file 6: Table S5. Enriched biological processes revealed by single-worm RNA-seq (infected samples relative to uninfected samples).
DOI: 10.6084/m9.figshare.21117128
title: Additional file 7 of Using single-worm RNA sequencing to study C. elegans responses to pathogen infection

description: Additional file 7: Table S6. Attenuated biological processes revealed by single-worm RNA-seq (infected samples relative to uninfected samples).
DOI: 10.6084/m9.figshare.21117128.v1
title: Additional file 7 of Using single-worm RNA sequencing to study C. elegans responses to pathogen infection

description: Additional file 7: Table S6. Attenuated biological processes revealed by single-worm RNA-seq (infected samples relative to uninfected samples).
DOI: 10.6084/m9.figshare.21117131
title: Additional file 8 of Using single-worm RNA sequencing to study C. elegans responses to pathogen infection

description: Additional file 8: Table S7. Enriched biological processes revealed by standard RNA-seq (infected samples relative to uninfected samples).
DOI: 10.6084/m9.figshare.21117131.v1
title: Additional file 8 of Using single-worm RNA sequencing to study C. elegans responses to pathogen infection

description: Additional file 8: Table S7. Enriched biological processes revealed by standard RNA-seq (infected samples relative to uninfected samples).
DOI: 10.6084/m9.figshare.21117137
title: Additional file 9 of Using single-worm RNA sequencing to study C. elegans responses to pathogen infection

description: Additional file 9: Table S8. Attenuated biological processes revealed by standard RNA-seq (infected samples relative to uninfected samples).
DOI: 10.6084/m9.figshare.21117137.v1
title: Additional file 9 of Using single-worm RNA sequencing to study C. elegans responses to pathogen infection

description: Additional file 9: Table S8. Attenuated biological processes revealed by standard RNA-seq (infected samples relative to uninfected samples).
DOI: 10.6084/m9.figshare.21117221
title: Additional file 2 of Design and construction of 3D printed devices to investigate active and passive bacterial dispersal on hydrated surfaces

description: Additional file 2. STL file of the “bacterial trail” device.
DOI: 10.6084/m9.figshare.21117221.v1
title: Additional file 2 of Design and construction of 3D printed devices to investigate active and passive bacterial dispersal on hydrated surfaces

description: Additional file 2. STL file of the “bacterial trail” device.
DOI: 10.6084/m9.figshare.21117224
title: Additional file 3 of Design and construction of 3D printed devices to investigate active and passive bacterial dispersal on hydrated surfaces

description: Additional file 3. STL file of the “bacterial bridge” device.
DOI: 10.6084/m9.figshare.21117224.v1
title: Additional file 3 of Design and construction of 3D printed devices to investigate active and passive bacterial dispersal on hydrated surfaces

description: Additional file 3. STL file of the “bacterial bridge” device.
DOI: 10.6084/m9.figshare.21117236
title: Additional file 1 of Validity and reliability of knowledge, attitude, and practice regarding exercise and exergames experiences questionnaire among high school students

description: Additional file 1.
DOI: 10.6084/m9.figshare.21117236.v1
title: Additional file 1 of Validity and reliability of knowledge, attitude, and practice regarding exercise and exergames experiences questionnaire among high school students

description: Additional file 1.
DOI: 10.6084/m9.figshare.21117251
title: Additional file 2 of Global proteomic profiling of multiple organs of cats (Felis catus) and proteome-transcriptome correlation during acute Toxoplasma gondii infection

description: Additional file 2: Table S1. The GO enrichment of all proteins in the brain, liver, lung, spleen, heart and small intestine of cats infected by Toxoplasma gondii on day 7 post-infection.
DOI: 10.6084/m9.figshare.21117251.v1
title: Additional file 2 of Global proteomic profiling of multiple organs of cats (Felis catus) and proteome-transcriptome correlation during acute Toxoplasma gondii infection

description: Additional file 2: Table S1. The GO enrichment of all proteins in the brain, liver, lung, spleen, heart and small intestine of cats infected by Toxoplasma gondii on day 7 post-infection.
DOI: 10.6084/m9.figshare.21117257
title: Additional file 3 of Global proteomic profiling of multiple organs of cats (Felis catus) and proteome-transcriptome correlation during acute Toxoplasma gondii infection

description: Additional file 3: Table S2. The KEGG enrichment of all proteins in the brain, liver, lung, spleen, heart and small intestine of cats infected by Toxoplasma gondii on day 7 post-infection.
DOI: 10.6084/m9.figshare.21117257.v1
title: Additional file 3 of Global proteomic profiling of multiple organs of cats (Felis catus) and proteome-transcriptome correlation during acute Toxoplasma gondii infection

description: Additional file 3: Table S2. The KEGG enrichment of all proteins in the brain, liver, lung, spleen, heart and small intestine of cats infected by Toxoplasma gondii on day 7 post-infection.
DOI: 10.6084/m9.figshare.21117263
title: Additional file 4 of Global proteomic profiling of multiple organs of cats (Felis catus) and proteome-transcriptome correlation during acute Toxoplasma gondii infection

description: Additional file 4: Table S3. The common differentially expressed proteins and transcripts in the brain, liver, lung, spleen, heart and small intestine of cats infected by Toxoplasma gondii on day 7 post-infection.
DOI: 10.6084/m9.figshare.21117263.v1
title: Additional file 4 of Global proteomic profiling of multiple organs of cats (Felis catus) and proteome-transcriptome correlation during acute Toxoplasma gondii infection

description: Additional file 4: Table S3. The common differentially expressed proteins and transcripts in the brain, liver, lung, spleen, heart and small intestine of cats infected by Toxoplasma gondii on day 7 post-infection.
DOI: 10.6084/m9.figshare.21117239
title: Additional file 10 of Translational design for limited resource settings as demonstrated by Vent-Lock, a 3D-printed ventilator multiplexer

description: Additional file 10: Data S1. STL print files of Vent-Lock splitter, FloRest, and manometer adaptor.
DOI: 10.6084/m9.figshare.21117239.v1
title: Additional file 10 of Translational design for limited resource settings as demonstrated by Vent-Lock, a 3D-printed ventilator multiplexer

description: Additional file 10: Data S1. STL print files of Vent-Lock splitter, FloRest, and manometer adaptor.
DOI: 10.6084/m9.figshare.21117242.v1
title: Additional file 11 of Translational design for limited resource settings as demonstrated by Vent-Lock, a 3D-printed ventilator multiplexer

description: Additional file 11: Data S2. MATLAB code used to analyze swine data.
DOI: 10.6084/m9.figshare.21117242
title: Additional file 11 of Translational design for limited resource settings as demonstrated by Vent-Lock, a 3D-printed ventilator multiplexer

description: Additional file 11: Data S2. MATLAB code used to analyze swine data.
DOI: 10.6084/m9.figshare.21117350
title: Additional file 1 of Variants influencing age at diagnosis of HNF1A-MODY

description: Additional file 1. Additional data S1.
DOI: 10.6084/m9.figshare.21117350.v1
title: Additional file 1 of Variants influencing age at diagnosis of HNF1A-MODY

description: Additional file 1. Additional data S1.
DOI: 10.6084/m9.figshare.21117362
title: Additional file 3 of Variants influencing age at diagnosis of HNF1A-MODY

description: Additional file 3. Additional data S3.
DOI: 10.6084/m9.figshare.21117362.v1
title: Additional file 3 of Variants influencing age at diagnosis of HNF1A-MODY

description: Additional file 3. Additional data S3.
DOI: 10.6084/m9.figshare.21117488
title: Additional file 1 of Predictors of recurrence of chronic subdural haematoma in a cohort study of patients presenting in a sub-Saharan African teaching hospital

description: Additional file 1.
DOI: 10.6084/m9.figshare.21117488.v1
title: Additional file 1 of Predictors of recurrence of chronic subdural haematoma in a cohort study of patients presenting in a sub-Saharan African teaching hospital

description: Additional file 1.
DOI: 10.6084/m9.figshare.21117497
title: Additional file 1 of Patient life aspirations in the context of Duchenne Muscular Dystrophy: a mixed-methods case–control study

description: Additional file 1. Supplemental Table 1. List of Measures by Age Cohort. Supplemental Table 2. Propensity Score Model. Supplemental Table 3. Inter-rater Reliability Results
DOI: 10.6084/m9.figshare.21117497.v1
title: Additional file 1 of Patient life aspirations in the context of Duchenne Muscular Dystrophy: a mixed-methods case–control study

description: Additional file 1. Supplemental Table 1. List of Measures by Age Cohort. Supplemental Table 2. Propensity Score Model. Supplemental Table 3. Inter-rater Reliability Results
DOI: 10.6084/m9.figshare.21117587
title: Additional file 1 of Enhancing the stability of CT radiomics across different volume of interest sizes using parametric feature maps: a phantom study

description: Additional file 1: Textfile S1. Script for Google Colab. Table S2. Results of the Mann-Whitney U test for the conventional feature extraction. Table S3. Results of the Mann-Whitney U test for the parametric map extraction. Table S4. Comparison of OCCC4-16 values: conventional extraction and parametric maps. Table S5. Comparison of OCCC8,16 values: conventional extraction and parametric maps. Fig. S6. Boxplots of the conventional extraction for all features. Fig. S7. Boxplots of the parametric map extraction for all features. Fig. S8. OCCC4-16 barplots comparing conventional and parametric map extraction. Fig. S9. OCCC8,16 barplots comparing conventional and parametric map extraction.
DOI: 10.6084/m9.figshare.21117587.v1
title: Additional file 1 of Enhancing the stability of CT radiomics across different volume of interest sizes using parametric feature maps: a phantom study

description: Additional file 1: Textfile S1. Script for Google Colab. Table S2. Results of the Mann-Whitney U test for the conventional feature extraction. Table S3. Results of the Mann-Whitney U test for the parametric map extraction. Table S4. Comparison of OCCC4-16 values: conventional extraction and parametric maps. Table S5. Comparison of OCCC8,16 values: conventional extraction and parametric maps. Fig. S6. Boxplots of the conventional extraction for all features. Fig. S7. Boxplots of the parametric map extraction for all features. Fig. S8. OCCC4-16 barplots comparing conventional and parametric map extraction. Fig. S9. OCCC8,16 barplots comparing conventional and parametric map extraction.
DOI: 10.6084/m9.figshare.21117584
title: Additional file 10 of Farnesyl pyrophosphate compartmentalization in the green microalga Chlamydomonas reinhardtii during heterologous (E)-α-bisabolene production

description: Additional file 10. This contains the 44 protein sequences that were both annotated as transporters by TransAAP and localized to the chloroplast membrane by DeepLoc.
DOI: 10.6084/m9.figshare.21117584.v1
title: Additional file 10 of Farnesyl pyrophosphate compartmentalization in the green microalga Chlamydomonas reinhardtii during heterologous (E)-α-bisabolene production

description: Additional file 10. This contains the 44 protein sequences that were both annotated as transporters by TransAAP and localized to the chloroplast membrane by DeepLoc.
DOI: 10.6084/m9.figshare.21117593
title: Additional file 1 of Farnesyl pyrophosphate compartmentalization in the green microalga Chlamydomonas reinhardtii during heterologous (E)-α-bisabolene production

description: Additional file 1. A list of oligonucleotides used for cloning of genetic constructs as listed in Table 2.
DOI: 10.6084/m9.figshare.21117593.v1
title: Additional file 1 of Farnesyl pyrophosphate compartmentalization in the green microalga Chlamydomonas reinhardtii during heterologous (E)-α-bisabolene production

description: Additional file 1. A list of oligonucleotides used for cloning of genetic constructs as listed in Table 2.
DOI: 10.6084/m9.figshare.21117599
title: Additional file 2 of Farnesyl pyrophosphate compartmentalization in the green microalga Chlamydomonas reinhardtii during heterologous (E)-α-bisabolene production

description: Additional file 2. Calculations for bisabolene standard quantification.
DOI: 10.6084/m9.figshare.21117599.v1
title: Additional file 2 of Farnesyl pyrophosphate compartmentalization in the green microalga Chlamydomonas reinhardtii during heterologous (E)-α-bisabolene production

description: Additional file 2. Calculations for bisabolene standard quantification.
DOI: 10.6084/m9.figshare.21117605
title: Additional file 3 of Farnesyl pyrophosphate compartmentalization in the green microalga Chlamydomonas reinhardtii during heterologous (E)-α-bisabolene production

description: Additional file 3. Calculation of bisabolene titers, yields, and rates for all mutants created in this work as shown in Additional file 11: Fig. S1 and Figs. 2, 3, and 4.
DOI: 10.6084/m9.figshare.21117605.v1
title: Additional file 3 of Farnesyl pyrophosphate compartmentalization in the green microalga Chlamydomonas reinhardtii during heterologous (E)-α-bisabolene production

description: Additional file 3. Calculation of bisabolene titers, yields, and rates for all mutants created in this work as shown in Additional file 11: Fig. S1 and Figs. 2, 3, and 4.
DOI: 10.6084/m9.figshare.21117608
title: Additional file 4 of Farnesyl pyrophosphate compartmentalization in the green microalga Chlamydomonas reinhardtii during heterologous (E)-α-bisabolene production

description: Additional file 4. Cell densities, CDW, and calculation of bisabolene titers and production rates for scale-up cultivations of cell line containing constructs x + xv + xvi as shown in Fig. 5.
DOI: 10.6084/m9.figshare.21117608.v1
title: Additional file 4 of Farnesyl pyrophosphate compartmentalization in the green microalga Chlamydomonas reinhardtii during heterologous (E)-α-bisabolene production

description: Additional file 4. Cell densities, CDW, and calculation of bisabolene titers and production rates for scale-up cultivations of cell line containing constructs x + xv + xvi as shown in Fig. 5.
DOI: 10.6084/m9.figshare.21117611
title: Additional file 5 of Farnesyl pyrophosphate compartmentalization in the green microalga Chlamydomonas reinhardtii during heterologous (E)-α-bisabolene production

description: Additional file 5. All transporters annotated by TransAAP, with duplications removed.
DOI: 10.6084/m9.figshare.21117611.v1
title: Additional file 5 of Farnesyl pyrophosphate compartmentalization in the green microalga Chlamydomonas reinhardtii during heterologous (E)-α-bisabolene production

description: Additional file 5. All transporters annotated by TransAAP, with duplications removed.
DOI: 10.6084/m9.figshare.21117617
title: Additional file 6 of Farnesyl pyrophosphate compartmentalization in the green microalga Chlamydomonas reinhardtii during heterologous (E)-α-bisabolene production

description: Additional file 6. Transporters annotated on the chloroplast genome by TransAAP
DOI: 10.6084/m9.figshare.21117617.v1
title: Additional file 6 of Farnesyl pyrophosphate compartmentalization in the green microalga Chlamydomonas reinhardtii during heterologous (E)-α-bisabolene production

description: Additional file 6. Transporters annotated on the chloroplast genome by TransAAP
DOI: 10.6084/m9.figshare.21117623
title: Additional file 7 of Farnesyl pyrophosphate compartmentalization in the green microalga Chlamydomonas reinhardtii during heterologous (E)-α-bisabolene production

description: Additional file 7. 3557 Protein sequences identified as having one or more putative TMS by TMHMM.
DOI: 10.6084/m9.figshare.21117623.v1
title: Additional file 7 of Farnesyl pyrophosphate compartmentalization in the green microalga Chlamydomonas reinhardtii during heterologous (E)-α-bisabolene production

description: Additional file 7. 3557 Protein sequences identified as having one or more putative TMS by TMHMM.
DOI: 10.6084/m9.figshare.21117629
title: Additional file 8 of Farnesyl pyrophosphate compartmentalization in the green microalga Chlamydomonas reinhardtii during heterologous (E)-α-bisabolene production

description: Additional file 8. DeepLoc assigned localization results for the protein sequences in ‘list_of_chlamy_with_tms’. 17 sequences were not able to be processed due to exceeding the size limit for DeepLoc (6000 aa), but based on their length and number of TMs they were extremely unlike to be candidates of interest.
DOI: 10.6084/m9.figshare.21117629.v1
title: Additional file 8 of Farnesyl pyrophosphate compartmentalization in the green microalga Chlamydomonas reinhardtii during heterologous (E)-α-bisabolene production

description: Additional file 8. DeepLoc assigned localization results for the protein sequences in ‘list_of_chlamy_with_tms’. 17 sequences were not able to be processed due to exceeding the size limit for DeepLoc (6000 aa), but based on their length and number of TMs they were extremely unlike to be candidates of interest.
DOI: 10.6084/m9.figshare.21117632
title: Additional file 9 of Farnesyl pyrophosphate compartmentalization in the green microalga Chlamydomonas reinhardtii during heterologous (E)-α-bisabolene production

description: Additional file 9. This file contain the names of all the protein sequences that were identified by DeepLoc, the complete list being in Additional file 9, as being localized to the chloroplast membrane.
DOI: 10.6084/m9.figshare.21117632.v1
title: Additional file 9 of Farnesyl pyrophosphate compartmentalization in the green microalga Chlamydomonas reinhardtii during heterologous (E)-α-bisabolene production

description: Additional file 9. This file contain the names of all the protein sequences that were identified by DeepLoc, the complete list being in Additional file 9, as being localized to the chloroplast membrane.
DOI: 10.6084/m9.figshare.21117662
title: Additional file 1 of Genome-wide species delimitation analyses of a silverside fish species complex in central Mexico indicate taxonomic over-splitting

description: Additional file 1: Appendix S1. Samples included in this study indicated the groups to which they belong in each of the different species hypotheses, analyses results, ecotypes, locality, and lake.
DOI: 10.6084/m9.figshare.21117662.v1
title: Additional file 1 of Genome-wide species delimitation analyses of a silverside fish species complex in central Mexico indicate taxonomic over-splitting

description: Additional file 1: Appendix S1. Samples included in this study indicated the groups to which they belong in each of the different species hypotheses, analyses results, ecotypes, locality, and lake.
DOI: 10.6084/m9.figshare.21117674
title: Additional file 3 of Genome-wide species delimitation analyses of a silverside fish species complex in central Mexico indicate taxonomic over-splitting

description: Additional file 3: Table S1. Information of the sampling localities in the central Mexico plateau: localities, lakes, number of samples (n), geographic coordinates (Latitude and Longitude) and Altitude (meters over sea level, m.o.s.l.). Table S2. Filters applied to SNP databases. The databases highlighted in bold were selected for further filtering. Table S3. Databases generated with Tassel filters used to evaluate the consistency of the genomic patterns to the number of SNPs, individuals, species, and missing data percentage. The matrices used in the genomic analyzes are indicated in bold. Table S4. Genomic pairwise FST comparisons for 3482 SNP loci among the nine morphospecies proposed by Barbour [10]. Values in bold indicate significance at α = 0.0014 for pairwise comparisons, following sequential Bonferroni corrections. Table S5. Genomic pairwise FST comparisons for 3482 SNP loci among the five mitonuclear groups proposed by Betancourt-Resendes et al. [11]. Values in bold indicate significance at α = 0.005 for pairwise comparisons, following sequential Bonferroni corrections. Table S6. Genomic pairwise FST comparisons for 3842 SNP loci among the four genomic clusters detected in humboldtianum group by DAPC analyses. Values in bold indicate significance at α = 0.0083 for pairwise comparisons, following sequential Bonferroni corrections. Table S7. Genomic pairwise FST comparisons for 3482 SNP loci among the three genomic clusters detected in the humboldtianum group by Admixture and phylogenetic analyses. Values in bold indicate significance at α = 0.017 for pairwise comparisons, following sequential Bonferroni corrections. Table S8. Genomic pairwise FST comparisons for 3482 SNP loci among the ecotypes in each lake. Values in bold indicate significance at α = 0.005 for pairwise comparisons, following sequential Bonferroni corrections. Table S9. Outlier loci detected by the FST outlier analysis performed in BayeScan related to gene regions.