cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17596/0000061
title: Typhoon tracks during the early 20th century

description: Digital dataset of typhoon tracks during the early 20th century over the Western North Pacific. This dataset was not used for a long period. Because, it was stored in paper books in a library. I digitized the locations of typhoon tracks from the "Monthly Bulletins of the Philippine Weather Bureau". This dataset has been checked the quality of typhoon definition and tracks by comparing the current best track data.
DOI: 10.17596/0000060
title: Historical rainfall dataset in the Philippines

description: Daily rainfall dataset during the early 20th century of 41 stations over the Philippines including Yap and Guam. This dataset is digitized the daily rainfall from the "Monthly Bulletins of the Philippine Weather Bureau" reported by American meteorologist.
DOI: 10.7303/syn51513524
title: file_versions_check_PEC
DOI: 10.15151/esrf-es-1174919214
title: PROTEINS RELATED TO PATHOGENESIS OF DISEASES, VIRAL PROTEINS, CELL DIVISION, SIGNALLING AND CHROMATIN PROCESSES

description: Our BAG is composed of eight PIs at six different institutions in Italy and Austria. We focus on a large variety of human, bacterial, viral and synthetic protein targets and address diverse biological contexts by combining structural biology with biochemistry, biophysics, cellular and in vivo investigations.
DOI: 10.15151/esrf-es-1101293374
title: UK Midlands BAG

description: The UK Midlands BAG consists of groups located at the Universities of Birmingham, Leicester, Warwick, Nottingham, Keele, and Wolverhampton. We represent a diverse spectrum of research interests, from microbiology, cancer biology, blood disorders, immunology to fundamental biological processes such as membrane transport, DNA repair and mechanisms of enzyme catalysis. Our groups use X-ray crystallography in conjunction with other structural biology, biophysical and biochemical techniques to elucidate molecular mechanisms of protein-protein and protein-ligand interactions. Our cooperation in this block allocation group is mirrored by the consortium of institutions that are stakeholders in the Midlands Regional CryoEM Facility at the University of Leicester.
DOI: 10.5281/zenodo.7904966
title: apn-z supplementary material

description: The following files were used to create the rotational and distortional constants of z-apn, reported in the Table 3 of the paper. All these files are used/created by <em>spfit/spcat</em> software. A short description of these same files is provided below. <em>z-apn</em> is shortened making use of the <em>* </em>symbol: <em>*.lin</em>: list of the lines recorded in this experiment, that were used in the fitting procedure. This file is required by <em>spfit</em>. *.par: rotational and distortional constants taking part in the Hamiltonian describing the rotational behaviour of the molecule under investigation. This file is required by <em>spfit</em>. *.int: dipole moments of the molecule under investigation. This file is required by <em>spfit</em>. *.fit: the result of the <em>spfit</em> fitting procedure. This file resumes the reliability of the fit. *.var: *.par equivalent file generated by <em>spfit</em>, in order to generate with <em>spcat</em> the list of predicted transitions. *.cat: list of predicted transitions. This file is generated by <em>spcat</em> For further details, refer to the paper.
DOI: 10.5281/zenodo.7904967
title: apn-z supplementary material

description: The following files were used to create the rotational and distortional constants of z-apn, reported in the Table 3 of the paper. All these files are used/created by <em>spfit/spcat</em> software. A short description of these same files is provided below. <em>z-apn</em> is shortened making use of the <em>* </em>symbol: <em>*.lin</em>: list of the lines recorded in this experiment, that were used in the fitting procedure. This file is required by <em>spfit</em>. *.par: rotational and distortional constants taking part in the Hamiltonian describing the rotational behaviour of the molecule under investigation. This file is required by <em>spfit</em>. *.int: dipole moments of the molecule under investigation. This file is required by <em>spfit</em>. *.fit: the result of the <em>spfit</em> fitting procedure. This file resumes the reliability of the fit. *.var: *.par equivalent file generated by <em>spfit</em>, in order to generate with <em>spcat</em> the list of predicted transitions. *.cat: list of predicted transitions. This file is generated by <em>spcat</em> For further details, refer to the paper.
DOI: 10.34943/b53821d2-e7d9-46a3-951c-d5c00d0c7268
title: Barkley Upper Slope Broadband Seismometer Deployed 2009-09-08

description: The Guralp CMG-IT Broadband Seismometer 2218 was deployed on 2009-09-08 at Barkley Upper Slope. Upper Slope is a location within Barkley Canyon, which is located on the upper continental slope. This device is a Broadband Seismometer. Broadband Seismometers measure seismic waves over a broad frequency range depending on the device (e.g. 0.00278 Hz - 250 Hz). A broadband seismometer facilitates measurement of seismic events in the widest frequency band possible. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.5066/p9opi1n3
title: Predictive Maps of Fuel Break Effectiveness by Treatment Type and Underlying Resilience to Disturbance and Resistance to Invasion Across the Western U.S.

description: Escalated wildfire activity within the western U.S. has widespread societal impacts and long-term consequences for the imperiled sagebrush (Artemisia spp.) biome. Shifts from historical fire regimes and the interplay between frequent disturbance and invasive annual grasses may initiate permanent state transitions as wildfire frequency outpaces sagebrush communities' innate capacity to recover. Therefore, wildfire management is at the core of conservation plans for sagebrush ecosystems, especially critical habitat for species of conservation concern such as the greater sage-grouse (Centrocercus urophasianus; hereafter sage-grouse). Fuel breaks help facilitate wildfire suppression by modifying behavior through fuels modification and allowing safe access points for containment by firefighters. We performed a retrospective assessment of probability of fuel break contributing to wildfire containment on all wildfire and fuel break interactions from 1985-2018 within the western U.S. We characterized environmental, fuels, and weather conditions within 500 meters of wildfire contact, and within 5 kilometers of the approaching wildfire. We used a binomial generalized mixed model framework with a binomial distribution to identify relationships between these variables and fuel break success. We used the probability of success as predicted from this model to generate maps of predicted probability of success of fuel breaks by resilience to disturbance and resistance to invasion classes for (a) brown strips, (b) mowed strips, (c) green strips, and (d) grand mean effects for all treatment types across the western U.S. These maps can be used to inform urgently needed fuel break placement, characteristics, and maintenance priorities across the sagebrush biome. These data support the following publication: Weise, C.L., Brussee, B.E., Coates, P.S., Shinneman, D.J., Crist, M.R., Aldridge, C.L., Heinrichs, J.A. and Ricca, M.A., 2023. A retrospective assessment of fuel break effectiveness for containing rangeland wildfires in the sagebrush biome. Journal of Environmental Management, 341, p.117903. https://doi.org/10.1016/j.jenvman.2023.117903.
DOI: 10.25919/2vgc-0387
title: IMOS Biological Ocean Observer - sysdata.rda

description: This is the sysdata.rda file that is used to populate the IMOS Biological Ocean Observer (BOO) Shiny App. The IMOS biological and supporting data is accessed directly from the AODN, processed and reformatted to the requirements of the Shiny App and stored in this location.
DOI: 10.5281/zenodo.6401895
title: Deterministic evolution and stringent selection during pre-neoplasia

description: The earliest events during human tumor initiation, while poorly characterized, may hold clues to malignancy detection and prevention. Here we model occult pre-neoplasia by bi-allelically inactivating <em>TP53</em>, a common early event in gastric cancer, in human gastric organoids. Causal relationships between this initiating genetic lesion and resulting phenotypes were established using experimental evolution in multiple clonally derived cultures over two years. <em>TP53</em> loss elicited progressive aneuploidy, including copy number alterations and structural variants prevalent in gastric cancers, with evident preferred orders. Longitudinal single cell sequencing of <em>TP53</em> deficient gastric organoids similarly indicates progression towards malignant transcriptional programs. Moreover, high-throughput lineage tracing with expressed cellular barcodes demonstrates reproducible dynamics whereby initially rare subclones with shared transcriptional programs repeatedly attain clonal dominance. This powerful platform for experimental evolution exposes stringent selection, clonal interference, and a striking degree of phenotypic convergence in pre-malignant epithelial organoids. These data imply predictability in the earliest stages of tumorigenesis and reveal evolutionary constraints and barriers to malignant transformation with implications for earlier detection and interception of aggressive, genome instable tumors.
description: {"references": ["Kasper Karlsson, Moritz J. Przybilla, Eran Kotler, Aziz Khan, Hang Xu, Kremena Karagyozova, Alexandra Sockell, Wing WH. Wong, Katherine Liu, Amanda Mah, Yuan-Hung Lo, Bingxin Lu, Kathleen E. Houlahan, Zhicheng Ma, Carlos J. Suarez, Chris P. Barnes, Calvin J. Kuo, Christina Curtis. Deterministic evolution and stringent selection during pre-neoplasias, bioRxiv 2022; doi: https://doi.org/10.1101/2022.04.09.487529"]}
DOI: 10.5281/zenodo.6401896
title: Deterministic evolution and stringent selection during pre-neoplasia

description: The earliest events during human tumor initiation, while poorly characterized, may hold clues to malignancy detection and prevention. Here we model occult pre-neoplasia by bi-allelically inactivating <em>TP53</em>, a common early event in gastric cancer, in human gastric organoids. Causal relationships between this initiating genetic lesion and resulting phenotypes were established using experimental evolution in multiple clonally derived cultures over two years. <em>TP53</em> loss elicited progressive aneuploidy, including copy number alterations and structural variants prevalent in gastric cancers, with evident preferred orders. Longitudinal single cell sequencing of <em>TP53</em> deficient gastric organoids similarly indicates progression towards malignant transcriptional programs. Moreover, high-throughput lineage tracing with expressed cellular barcodes demonstrates reproducible dynamics whereby initially rare subclones with shared transcriptional programs repeatedly attain clonal dominance. This powerful platform for experimental evolution exposes stringent selection, clonal interference, and a striking degree of phenotypic convergence in pre-malignant epithelial organoids. These data imply predictability in the earliest stages of tumorigenesis and reveal evolutionary constraints and barriers to malignant transformation with implications for earlier detection and interception of aggressive, genome instable tumors.
description: {"references": ["Kasper Karlsson, Moritz J. Przybilla, Eran Kotler, Aziz Khan, Hang Xu, Kremena Karagyozova, Alexandra Sockell, Wing WH. Wong, Katherine Liu, Amanda Mah, Yuan-Hung Lo, Bingxin Lu, Kathleen E. Houlahan, Zhicheng Ma, Carlos J. Suarez, Chris P. Barnes, Calvin J. Kuo, Christina Curtis. Deterministic evolution and stringent selection during pre-neoplasias, bioRxiv 2022; doi: https://doi.org/10.1101/2022.04.09.487529"]}
DOI: 10.5281/zenodo.7804635
title: Deterministic evolution and stringent selection during pre-neoplasia

description: The earliest events during human tumor initiation, while poorly characterized, may hold clues to malignancy detection and prevention. Here we model occult pre-neoplasia by bi-allelically inactivating <em>TP53</em>, a common early event in gastric cancer, in human gastric organoids. Causal relationships between this initiating genetic lesion and resulting phenotypes were established using experimental evolution in multiple clonally derived cultures over two years. <em>TP53</em> loss elicited progressive aneuploidy, including copy number alterations and structural variants prevalent in gastric cancers, with evident preferred orders. Longitudinal single cell sequencing of <em>TP53</em> deficient gastric organoids similarly indicates progression towards malignant transcriptional programs. Moreover, high-throughput lineage tracing with expressed cellular barcodes demonstrates reproducible dynamics whereby initially rare subclones with shared transcriptional programs repeatedly attain clonal dominance. This powerful platform for experimental evolution exposes stringent selection, clonal interference, and a striking degree of phenotypic convergence in pre-malignant epithelial organoids. These data imply predictability in the earliest stages of tumorigenesis and reveal evolutionary constraints and barriers to malignant transformation with implications for earlier detection and interception of aggressive, genome instable tumors.
description: {"references": ["Kasper Karlsson, Moritz J. Przybilla, Eran Kotler, Aziz Khan, Hang Xu, Kremena Karagyozova, Alexandra Sockell, Wing WH. Wong, Katherine Liu, Amanda Mah, Yuan-Hung Lo, Bingxin Lu, Kathleen E. Houlahan, Zhicheng Ma, Carlos J. Suarez, Chris P. Barnes, Calvin J. Kuo, Christina Curtis. Deterministic evolution and stringent selection during pre-neoplasias, bioRxiv 2022; doi: https://doi.org/10.1101/2022.04.09.487529"]}
DOI: 10.5281/zenodo.7946997
title: Molecular characterization of brown carbon chromophores in atmospherically-relevant samples and their gas-particle distribution and diurnal variation in the atmosphere

description: This file include all data given in the figures in our manuscript submitted to JGR-Atmosphere
DOI: 10.6084/m9.figshare.22909964
title: developing_heart_visium

description: Visium developing heart
DOI: 10.6084/m9.figshare.22909964.v1
title: developing_heart_visium

description: Visium developing heart
DOI: 10.34740/kaggle/dsv/5711997
title: Youtube Trending Video - Taiwan & Hong Kong
DOI: 10.6084/m9.figshare.19374350
title: A genome-informed higher rank classification of the biotechnologically important fungal subphylum Saccharomycotina

description: All data were used to identify class/order-specific gene families
DOI: 10.6084/m9.figshare.19679481
title: Localizing Japanese toads in a mountainous terrain using drone-based radiotelemetry

description: This dataset provides the relevant data for the paper titled "Localizing Japanese toads in a mountainous terrain using drone-based radiotelemetry." The dataset contains (1) an archive of received data ("MMdd-NoNN.csv"), (2) flight information and actual location of toads ("flight.csv") (3) MATLAB (R2020b) code to plot the estimated location of detected transmitter ("Estimation.m").
DOI: 10.6084/m9.figshare.19679481.v1
title: Localizing Japanese toads in a mountainous terrain using drone-based radiotelemetry

description: This dataset provides the relevant data for the paper titled "Localizing Japanese toads in a mountainous terrain using drone-based radiotelemetry." The dataset contains (1) an archive of received data ("MMdd-NoNN.csv"), (2) flight information and actual location of toads ("flight.csv") (3) MATLAB (R2020b) code to plot the estimated location of detected transmitter ("Estimation.m").
DOI: 10.5519/qd.e05l2pe2
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.22911410
title: Dataset

description: Dataset agile project
DOI: 10.6084/m9.figshare.22911410.v1
title: Dataset

description: Dataset agile project
DOI: 10.5519/qd.e004x2ua
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (7 records)
DOI: 10.6084/m9.figshare.22911329
title: DataBasePS.xlsx

description: Dataset extracted from Stack Exchange to analyze psychological safety in the context of software engineering
DOI: 10.6084/m9.figshare.22911329.v1
title: DataBasePS.xlsx

description: Dataset extracted from Stack Exchange to analyze psychological safety in the context of software engineering
DOI: 10.5519/qd.1pvg84um
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (13495 records)
DOI: 10.6084/m9.figshare.22817558
title: Doctoral thesis-Mengqi Wang-Chapter 5

description: <strong>Table S1</strong> Genes and their primer sequences used for real-time qPCR validation of RNA-sequencing results <strong>Table S2</strong> Read mapping statistics of whole-genome bisulfite sequencing data and RNA sequencing data of six cows <strong>Table S3</strong> The list of differentially methylated cytosines (DMCs) in the context of CpG, CHG and CHH <strong>Table S4</strong> The number of DMCs (CpG, CHG and CHH) in different genetic regions <strong>Table S5 </strong>The list of DMRs and annotation <strong>Table S6</strong> The list of genes harboring DMCs or overlapping with DMRs <strong>Table S7</strong> Functional enrichment of genes harboring at least 15 DMCs <strong>Table S8</strong> The list of differentially methylated haplotype blocks (dMHBs) and functional enrichment for hyper dMHBs <strong>Table S9</strong> The list of differentially expressed (DE) genes and their functional enrichment <strong>Table S10 </strong>The genome-wide correlation between DNA methylation and gene expression and list of MetGDE genes <strong>Table S11</strong> The results of functional enrichment differentially methylated and expressed genes (MetGDE genes) <strong>Table S12</strong> The cluster of functional annotations enriched by differential methylated and expressed genes (MetGDE genes) <strong>Table S13 </strong>The correlation between discriminant candidate biomarkers
DOI: 10.6084/m9.figshare.22817558.v1
title: Doctoral thesis-Mengqi Wang-Chapter 5

description: <strong>Table S1</strong> Read mapping statistics of whole-genome bisulfite sequencing data of six cows <strong>Table S2</strong> The list of differentially methylated cytosines (DMCs) in the context of CpG, CHG and CHH <strong>Table S3</strong> The number of DMCs in CpG context? in different genetic regions <strong>Table S4 </strong>The list of DMRs and annotation <strong>Table S5</strong> The list of genes harboring DMCs or overlapping with DMRs <strong>Table S6</strong> Functional enrichment of genes harboring at least 15 DMCs <strong>Table S7</strong> The list of differentially methylated haplotype blocks (dMHBs) <strong>Table S8</strong> The list of differentially expressed (DE) genes and their functional enrichment <strong>Table S9</strong> The correlation between DNA methylation and gene expression at the scope of whole genome and list of differentially methylated and expressed genes (MetGDE genes) <strong>Table S10</strong> The results of functional enrichment differentially methylated and expressed genes (MetGDE genes) <strong>Table S11</strong> The cluster of functional annotations enriched by differential methylated and expressed genes (MetGDE genes) <strong>Table S12</strong> The correlation between discriminant candidate biomarkers
DOI: 10.6084/m9.figshare.22817558.v2
title: Doctoral thesis-Mengqi Wang-Chapter 5

description: <strong>Table S1</strong> Genes and their primer sequences used for real-time qPCR validation of RNA-sequencing results <strong>Table S2</strong> Read mapping statistics of whole-genome bisulfite sequencing data and RNA sequencing data of six cows <strong>Table S3</strong> The list of differentially methylated cytosines (DMCs) in the context of CpG, CHG and CHH <strong>Table S4</strong> The number of DMCs (CpG, CHG and CHH) in different genetic regions <strong>Table S5 </strong>The list of DMRs and annotation <strong>Table S6</strong> The list of genes harboring DMCs or overlapping with DMRs <strong>Table S7</strong> Functional enrichment of genes harboring at least 15 DMCs <strong>Table S8</strong> The list of differentially methylated haplotype blocks (dMHBs) and functional enrichment for hyper dMHBs <strong>Table S9</strong> The list of differentially expressed (DE) genes and their functional enrichment <strong>Table S10 </strong>The genome-wide correlation between DNA methylation and gene expression and list of MetGDE genes <strong>Table S11</strong> The results of functional enrichment differentially methylated and expressed genes (MetGDE genes) <strong>Table S12</strong> The cluster of functional annotations enriched by differential methylated and expressed genes (MetGDE genes) <strong>Table S13 </strong>The correlation between discriminant candidate biomarkers
DOI: 10.6084/m9.figshare.16755651
title: Reproductive changes in Foveaux Strait <i>Ostrea chilensis</i>, Southern New Zealand, after <i>Bonamia exitiosa</i> epidemics

description: The commercially significant Foveaux Strait <i>Ostrea chilensis</i> fishery has been typified by consistently low brooding rates and recruitment failures since recurrent mass mortalities from <i>Bonamia exitiosa</i> infection. The present study examined the gametogenic cycle of Foveaux Strait <i>O. chilensis</i> monthly, from July 2017 to September 2018, using histological examination of the gonad and condition indices to determine resulting changes to gametogenesis, spawning, brooding, and spatial variation, compared to an initial study of reproduction before <i>B. exitiosa</i> epidemics. The seasonal gametogenic cycle and brooding period were similar to previous descriptions. However, there was evidence for a more female skewed sex ratio, and the development and release of ova into the mantle cavity at smaller sizes. Despite similarities in gametogenesis, sex ratios, temperature, and chlorophyll-a concentrations between five sites across Foveaux Strait, the western-most site had no brooders and consistently lower condition indices, compared to the eastern-most site. Oysters may need to be in sufficient condition to initiate brooding, and reduced male densities may contribute to sperm limitation, which, along with a disconnect between the peak release of gametes and brooding, may have contributed to lower brooding rates.
DOI: 10.6084/m9.figshare.16755651.v1
title: Reproductive changes in Foveaux Strait <i>Ostrea chilensis</i>, Southern New Zealand, after <i>Bonamia exitiosa</i> epidemics

description: The commercially significant Foveaux Strait <i>Ostrea chilensis</i> fishery has been typified by consistently low brooding rates and recruitment failures since recurrent mass mortalities from <i>Bonamia exitiosa</i> infection. The present study examined the gametogenic cycle of Foveaux Strait <i>O. chilensis</i> monthly, from July 2017 to September 2018, using histological examination of the gonad and condition indices to determine resulting changes to gametogenesis, spawning, brooding, and spatial variation, compared to an initial study of reproduction before <i>B. exitiosa</i> epidemics. The seasonal gametogenic cycle and brooding period were similar to previous descriptions. However, there was evidence for a more female skewed sex ratio, and the development and release of ova into the mantle cavity at smaller sizes. Despite similarities in gametogenesis, sex ratios, temperature, and chlorophyll-a concentrations between five sites across Foveaux Strait, the western-most site had no brooders and consistently lower condition indices, compared to the eastern-most site. Oysters may need to be in sufficient condition to initiate brooding, and reduced male densities may contribute to sperm limitation, which, along with a disconnect between the peak release of gametes and brooding, may have contributed to lower brooding rates.
DOI: 10.25540/ajc3-2a4e
title: Replication data for "Cost of Cash: Evidence from Cashiers"