cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3657086_d2
title: Additional file 6 of TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas

description: A spreadsheet file containing 3 sheets: (i) All statistics includes the patient, sample, and aliquot counts for each tumor and experiment type; (ii) Counts for each experiment includes the occurrences of the patients, samples, and aliquots for each experiment (iii) Total counts for each tumor includes the occurrences of the patients, samples, and aliquots for each tumor. (XLSX 29.1 kb)
DOI: 10.6084/m9.figshare.c.3657074_d6.v1
title: MOESM5 of Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism

description: Additional file 5: Data set S3. Differential gene expression. Differential gene expression expressed as a ratio between the ΔhydG, ∆hydG ∆ech, and wild-type strains of C. thermocellum in the presence or absence of acetate. Included is the False Discovery Rate (FDR) adjusted p value for each gene comparison with an FDR adjusted p value &lt;0.05 and greater than ±1 log2 transformed ratio between the conditions indicative of altered gene regulation.
DOI: 10.6084/m9.figshare.c.3657086_d3.v1
title: Additional file 5 of TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas

description: A text file that reports the details about the content and the structure of the TCGA2BED data repository. (TXT 2.56 kb)
DOI: 10.6084/m9.figshare.c.3657074_d6
title: MOESM5 of Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism

description: Additional file 5: Data set S3. Differential gene expression. Differential gene expression expressed as a ratio between the ΔhydG, ∆hydG ∆ech, and wild-type strains of C. thermocellum in the presence or absence of acetate. Included is the False Discovery Rate (FDR) adjusted p value for each gene comparison with an FDR adjusted p value &lt;0.05 and greater than ±1 log2 transformed ratio between the conditions indicative of altered gene regulation.
DOI: 10.6084/m9.figshare.c.3657086_d3
title: Additional file 5 of TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas

description: A text file that reports the details about the content and the structure of the TCGA2BED data repository. (TXT 2.56 kb)
DOI: 10.6084/m9.figshare.c.3657086_d4.v1
title: Additional file 2 of TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas

description: A compressed archive containing 5 folders that include the example files for each supported format: (i) bed_example; (ii) csv_example; (iii) gtf_example; (iv) json_example; (v) xml_example. (ZIP 37.9 kb)
DOI: 10.6084/m9.figshare.c.3657086_d4
title: Additional file 2 of TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas

description: A compressed archive containing 5 folders that include the example files for each supported format: (i) bed_example; (ii) csv_example; (iii) gtf_example; (iv) json_example; (v) xml_example. (ZIP 37.9 kb)
DOI: 10.6084/m9.figshare.c.3657086_d5.v1
title: Additional file 3 of TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas

description: A text file that includes installation and execution details of the TCGA2BED software package. (TXT 3.40 kb)
DOI: 10.6084/m9.figshare.c.3657086_d5
title: Additional file 3 of TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas

description: A text file that includes installation and execution details of the TCGA2BED software package. (TXT 3.40 kb)
DOI: 10.6084/m9.figshare.c.3657107_d1.v1
title: Additional file 3: of Evolutionary history of versatile-lipases from Agaricales through reconstruction of ancestral structures

description: Sequences alignment of the putative ancestral versatile lipases identified. (FAS 5 kb)
DOI: 10.6084/m9.figshare.c.3659282_d1.v1
title: MOESM1 of What is the normal value of the neutrophil-to-lymphocyte ratio?

description: Additional file 1. Raw data of neutrophil-to-lymphocyte ratio.
DOI: 10.6084/m9.figshare.c.3659282_d1
title: MOESM1 of What is the normal value of the neutrophil-to-lymphocyte ratio?

description: Additional file 1. Raw data of neutrophil-to-lymphocyte ratio.
DOI: 10.6084/m9.figshare.c.3659243_d8.v1
title: Additional file 1: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: a Tree inferred by CSI Phylogeny pruning set to 10, contigs from day 1 used as reference. PDF. b Tree inferred by CSI Phylogeny pruning set to 10, contigs from day 1 used as reference. Newick file. (ZIP 6 kb)
DOI: 10.6084/m9.figshare.c.3659243_d8
title: Additional file 1: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: a Tree inferred by CSI Phylogeny pruning set to 10, contigs from day 1 used as reference. PDF. b Tree inferred by CSI Phylogeny pruning set to 10, contigs from day 1 used as reference. Newick file. (ZIP 6 kb)
DOI: 10.6084/m9.figshare.c.3659243_d9.v1
title: Additional file 5: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: a Tree inferred by NDtree, Z-score 1.96, Neighbor Joining tree, E. coli MG1655 (NC_000913) used as reference. PDF. b Tree inferred by NDtree, Z-score 1.96, Neighbor Joining tree, E. coli MG1655 (NC_000913) used as reference. Newick file. (ZIP 5 kb)
DOI: 10.6084/m9.figshare.c.3659243_d9
title: Additional file 5: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: a Tree inferred by NDtree, Z-score 1.96, Neighbor Joining tree, E. coli MG1655 (NC_000913) used as reference. PDF. b Tree inferred by NDtree, Z-score 1.96, Neighbor Joining tree, E. coli MG1655 (NC_000913) used as reference. Newick file. (ZIP 5 kb)
DOI: 10.6084/m9.figshare.27254208
title: DATOS SUPLEMENTARIOS. Caracterización de las prácticas ganaderas del yacimiento de Niuet (l’Alqueria d’Asnar, Alicante) en el contexto de los asentamientos del IV al III milenio a.C. en el este de la península ibérica

description: The archaeozoological analysis of the Niuet site (l’Alqueria d’Asnar, Alicante) has allowed characterising the economic importance of husbandry practices during the Late Neolithic in the middle Serpis valley. The results show the predominance of domestic species over wild ones. Although caprines are the most abundant species, cattle acquire greater economic importance, evidencing a significant change in husbandry strategies concerning the 6th millennium BC in the eastern Iberian Peninsula. The current archaeological record points to greater use of secondary products, possibly influenced by socioeconomic factors and favourable environmental conditions for maintaining and exploiting domestic herds. This work contributes to understanding husbandry management practices in open-air settlements, specifically, during the 4th millennium BC, before metallurgy and the Bell Beaker phenomenon, facilitating understanding of the change processes in the Serpis valley.
DOI: 10.5517/ccdc.csd.cc12d1k2
title: CCDC 994683: Experimental Crystal Structure Determination

description: Related Article: Radhwane Takouachet, Rim Benali-Cherif, EL-Eulmi Bendeif, Karim Bouchouit, Wahiba Falek, Bouchta Sahraoui, Ali Rahmouni, Nourredine Benali-Cherif|2024|Inorg.Chem.Commun.|170|113439|doi:10.1016/j.inoche.2024.113439
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.c.3661748_d1.v1
title: Additional file 2: of Looking beyond the brain to improve the pathogenic understanding of Parkinson’s disease: implications of whole transcriptome profiling of Patients’ skin

description: The comparative gene expression list from RNA-sequencing analysis of skin samples from Parkinson’s Disease patients and controls. An excel file of all regulated genes between Parkinson’s Disease patients and control skin samples from RNA-sequencing analysis, which includes a column form of data including the geneID, log2FC, logCPM, p-value, FDR, the HGNC identifier and the name of the gene. (XLSX 1752 kb)
DOI: 10.5517/ccdc.csd.cc12d1l3
title: CCDC 994684: Experimental Crystal Structure Determination

description: Related Article: Radhwane Takouachet, Rim Benali-Cherif, EL-Eulmi Bendeif, Karim Bouchouit, Wahiba Falek, Bouchta Sahraoui, Ali Rahmouni, Nourredine Benali-Cherif|2024|Inorg.Chem.Commun.|170|113439|doi:10.1016/j.inoche.2024.113439
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.c.3661748_d1
title: Additional file 2: of Looking beyond the brain to improve the pathogenic understanding of Parkinson’s disease: implications of whole transcriptome profiling of Patients’ skin

description: The comparative gene expression list from RNA-sequencing analysis of skin samples from Parkinson’s Disease patients and controls. An excel file of all regulated genes between Parkinson’s Disease patients and control skin samples from RNA-sequencing analysis, which includes a column form of data including the geneID, log2FC, logCPM, p-value, FDR, the HGNC identifier and the name of the gene. (XLSX 1752 kb)
DOI: 10.5517/ccdc.csd.cc2kkgp9
title: CCDC 2370281: Experimental Crystal Structure Determination

description: Related Article: Ece Zeynep Tüzün, Drahomír Hnyk, Dmytro Bavol, Miroslava Litecká, Jindřich Fanfrlík, Bohumír Grűner|2024|Dalton Trans.|53|18462|doi:10.1039/D4DT02588A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.3ysenn
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Antennarius multiocellatus (Valenciennes, 1837)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 127 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038793-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/10234912
title: e-IPO Indonesia Data - Investment
DOI: 10.15468/dl.rdyp3z
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Saxifraga adscendens subsp. parnassica (Boiss. & Heldr.) Hayek, Saxifraga parnassica Boiss. & Heldr., Saxifraga tridactylites subsp. parnassica (Boiss. & Heldr.) Engl. & Irmsch.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038794-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3663463_d6.v1
title: Additional file 6: Table S6. of An integrated analysis of QTL mapping and RNA sequencing provides further insights and promising candidates for pod number variation in rapeseed (Brassica napus L.)

description: 190 KEGG pathways represented by DEGs between Zhongshuang11 and No.73290. (XLSX 128Â kb)
DOI: 10.6084/m9.figshare.c.3663463_d6
title: Additional file 6: Table S6. of An integrated analysis of QTL mapping and RNA sequencing provides further insights and promising candidates for pod number variation in rapeseed (Brassica napus L.)

description: 190 KEGG pathways represented by DEGs between Zhongshuang11 and No.73290. (XLSX 128Â kb)
DOI: 10.6084/m9.figshare.c.3663496_d2.v1
title: Additional file 7: Table S6. of Integrated RNA-seq and DNase-seq analyses identify phenotype-specific BMP4 signaling in breast cancer

description: MDA-MB-231 GREAT analysis. Table S7. T-47D GREAT analysis. Enrichment of open chromatin peaks using GREAT. Red color denotes categories that are the same as in the RNA-seq ontology analysis. (XLSX 146Â kb)
DOI: 10.6084/m9.figshare.c.3663496_d2
title: Additional file 7: Table S6. of Integrated RNA-seq and DNase-seq analyses identify phenotype-specific BMP4 signaling in breast cancer

description: MDA-MB-231 GREAT analysis. Table S7. T-47D GREAT analysis. Enrichment of open chromatin peaks using GREAT. Red color denotes categories that are the same as in the RNA-seq ontology analysis. (XLSX 146Â kb)
DOI: 10.6084/m9.figshare.c.3663448_d9.v1
title: Additional file 4: Table S3. of Distinct 5-methylcytosine profiles in poly(A) RNA from mouse embryonic stem cells and brain

description: Methylated cytosines in total poly(A) ESC RNA. (XLSX 761 kb)
DOI: 10.6084/m9.figshare.c.3663448_d9
title: Additional file 4: Table S3. of Distinct 5-methylcytosine profiles in poly(A) RNA from mouse embryonic stem cells and brain

description: Methylated cytosines in total poly(A) ESC RNA. (XLSX 761 kb)
DOI: 10.6084/m9.figshare.c.3663463_d7.v1
title: Additional file 3: Table S3. of An integrated analysis of QTL mapping and RNA sequencing provides further insights and promising candidates for pod number variation in rapeseed (Brassica napus L.)

description: List of QTLs identified in the our and other studies for pod number in rapeseed. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3663496_d3.v1
title: Additional file 5: Table S5. of Integrated RNA-seq and DNase-seq analyses identify phenotype-specific BMP4 signaling in breast cancer

description: Comparison between our T-47D DNase-seq data and analogous data from ENCODE. DNase-seq peaks from promoter regions in BMP4-treated and vehicle-treated T-47D cells were compared to DNase-seq data of T-47D promoters from ENCODE (ENCSR000ELT replicates 1 and 2; ENCSR000EQB replicates 1 and 2). The table shows the percentage of shared peaks between pairs of samples. A high percentage of the peaks identified in our data are also present in ENCODE samples (cells B6-E7). (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3663463_d7
title: Additional file 3: Table S3. of An integrated analysis of QTL mapping and RNA sequencing provides further insights and promising candidates for pod number variation in rapeseed (Brassica napus L.)

description: List of QTLs identified in the our and other studies for pod number in rapeseed. (XLSX 21Â kb)
DOI: 10.34760/5f5b7d5599e14
title: Quality assessment of pharmacotherapy in patients with chronic kidney disease in secondary care patients

description: Anonimized outpatient data from 3 hospitals, including medication, kidney function, risk factor levels, age
description: Data categories: Medical records
Number of donors: 3132
Sex: Unknown
Age: >18 Year
Diseases studied: Chronic kidney disease, unspecified
DOI: 10.5281/zenodo.14512631
title: SynthRSF-MM Expansion - A Novel Photorealistic Synthetic Dataset for Adverse Weather Condition Denoising

description: SynthRSF-MM Expansion Dataset




Contents






SynthRSF-MM expansion:



13,800 additional pairs are accompanied by:

16-bit depth maps.

Pixel-accurate object annotations for 41 object classes.





SynthRSF (Parts 1, 2):



26,893 photorealistic image pairs (noisy and ground truth).

14 3D scenes set in various environmental (rural/urban), contextual (indoor/outdoor) and lighting conditions (day/night).

Created using Unreal 5.2 engine.






Overview




SynthRSF (Synthetic with Rain, Snow, uniform and non-uniform Fog) dataset is introduced for training and evaluating adverse weather image denoising models as well as use in object detection, semantic segmentation, and depth estimation models.

SynthRSF addresses a gap in synthetic datasets for adverse weather conditions, contributing significantly more photorealistic data compared to common 2D layered noise datasets, as well as additional modalities.

Applications include autonomous driving, surveillance, robotics, computer-assisted search-and-rescue.
DOI: 10.5281/zenodo.14512632
title: SynthRSF-MM Expansion - A Novel Photorealistic Synthetic Dataset for Adverse Weather Condition Denoising

description: SynthRSF-MM Expansion Dataset




Contents






SynthRSF-MM expansion:



13,800 additional pairs are accompanied by:

16-bit depth maps.

Pixel-accurate object annotations for 41 object classes.





SynthRSF (Parts 1, 2):



26,893 photorealistic image pairs (noisy and ground truth).

14 3D scenes set in various environmental (rural/urban), contextual (indoor/outdoor) and lighting conditions (day/night).

Created using Unreal 5.2 engine.






Overview




SynthRSF (Synthetic with Rain, Snow, uniform and non-uniform Fog) dataset is introduced for training and evaluating adverse weather image denoising models as well as use in object detection, semantic segmentation, and depth estimation models.

SynthRSF addresses a gap in synthetic datasets for adverse weather conditions, contributing significantly more photorealistic data compared to common 2D layered noise datasets, as well as additional modalities.

Applications include autonomous driving, surveillance, robotics, computer-assisted search-and-rescue.
DOI: 10.6084/m9.figshare.c.3665671_d8
title: Additional file 12: of Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)

description: SNPs identified in I. trifida (Sp2). (ZIP 89.7 MB)
DOI: 10.6084/m9.figshare.c.3665683_d8.v1
title: Additional file 6: of Detection of critical cerebral desaturation thresholds by three regional oximeters during hypoxia: a pilot study in healthy volunteers

description: Raw data subject #1791. (XLSX 116 kb)
DOI: 10.6084/m9.figshare.c.3665710_d1
title: Additional file 4: of Characteristics and use of urban health indicator tools by municipal built environment policy and decision-makers: a systematic review protocol

description: Data extraction form part B. Data extraction form part B. (XLS 22Â kb)
DOI: 10.6084/m9.figshare.c.3665683_d7
title: Additional file 9: of Detection of critical cerebral desaturation thresholds by three regional oximeters during hypoxia: a pilot study in healthy volunteers

description: Raw data subject #2142. (XLSX 124 kb)
DOI: 10.6084/m9.figshare.c.3665683_d8
title: Additional file 6: of Detection of critical cerebral desaturation thresholds by three regional oximeters during hypoxia: a pilot study in healthy volunteers

description: Raw data subject #1791. (XLSX 116 kb)
DOI: 10.6084/m9.figshare.c.3665671_d9.v1
title: Additional file 2: of Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)

description: BLAST annotation and Gene Ontology (GO) classification of I. trifida contigs (Sp2). (ZIP 42.9 MB)
DOI: 10.6084/m9.figshare.c.3665671_d9
title: Additional file 2: of Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)

description: BLAST annotation and Gene Ontology (GO) classification of I. trifida contigs (Sp2). (ZIP 42.9 MB)
DOI: 10.6084/m9.figshare.c.3665683_d9.v1
title: Additional file 4: of Detection of critical cerebral desaturation thresholds by three regional oximeters during hypoxia: a pilot study in healthy volunteers

description: Raw data subject #1657. (XLSX 122 kb)
DOI: 10.6084/m9.figshare.c.3665683_d9
title: Additional file 4: of Detection of critical cerebral desaturation thresholds by three regional oximeters during hypoxia: a pilot study in healthy volunteers

description: Raw data subject #1657. (XLSX 122 kb)
DOI: 10.6084/m9.figshare.c.3665671_d10.v1
title: Additional file 11: of Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)

description: SNPs identified in I. batatas (Sp1). (ZIP 190 MB)
DOI: 10.6084/m9.figshare.c.3665683_d10.v1
title: Additional file 3: of Detection of critical cerebral desaturation thresholds by three regional oximeters during hypoxia: a pilot study in healthy volunteers

description: Raw data subject #1654. (XLSX 174 kb)
DOI: 10.6084/m9.figshare.c.3665683_d10
title: Additional file 3: of Detection of critical cerebral desaturation thresholds by three regional oximeters during hypoxia: a pilot study in healthy volunteers

description: Raw data subject #1654. (XLSX 174 kb)
DOI: 10.6084/m9.figshare.c.3665710_d4.v1
title: Additional file 3: of Characteristics and use of urban health indicator tools by municipal built environment policy and decision-makers: a systematic review protocol

description: Data extraction form part A. Data extraction form part A. (XLS 33Â kb)
DOI: 10.15468/dl.zdf84g
title: Occurrence Download

description: A dataset containing 12540 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spodoptera frugiperda J.E.Smith, 1797"
 ]
}

 The dataset includes 12540 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038796-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3665671_d10
title: Additional file 11: of Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)

description: SNPs identified in I. batatas (Sp1). (ZIP 190 MB)
DOI: 10.6084/m9.figshare.c.3665710_d4
title: Additional file 3: of Characteristics and use of urban health indicator tools by municipal built environment policy and decision-makers: a systematic review protocol

description: Data extraction form part A. Data extraction form part A. (XLS 33Â kb)
DOI: 10.15468/dl.wvmvfk
title: Occurrence Download

description: A dataset containing 5267 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((28.42021 -26.21613,28.47256 -26.21613,28.47256 -26.17911,28.42021 -26.17911,28.42021 -26.21613))"
 ]
}

 The dataset includes 5267 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038798-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3666355_d1.v1
title: MOESM1 of Non-associative versus associative learning by foraging predatory mites

description: Additional file 1: Table S1. Raw data of both experiments, no-choice and choice.
DOI: 10.6084/m9.figshare.c.3666343_d3.v1
title: Additional file 3: of Randomized, double-blind, placebo-controlled clinical trial to assess the safety and effectiveness of a novel dual-action oral topical formulation against upper respiratory infections

description: RawDataR2. (XLSX 669Â kb)
DOI: 10.6084/m9.figshare.c.3666355_d1
title: MOESM1 of Non-associative versus associative learning by foraging predatory mites

description: Additional file 1: Table S1. Raw data of both experiments, no-choice and choice.