cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15976113
title: CEX Project - GoldStandard Fulltext

description: This gold standard collection comprises 107 scholarly articles, from 27 disciplines (according to the Scimago subject categories), each represented in multiple structured formats to support research on document processing, citation analysis, and linked data modeling.

The list of all articles is provided in the GS_info.txt file. If an entry is marked as “Restricted”, it means that the corresponding PDF is not Open Access. As a result, these PDFs are not included in the dataset and cannot be found in the GoldStandard_PDF folder. On the other hand, all articles that are Open Access are shared in this folder in their original PDF format.

For each article, we provide four complementary files, designed to capture the document’s content, structure, and citation information comprehensively:





The original PDF, available for Open Access papers, preserves the published layout and formatting of the article.




A TEI XML file, which is a full-text, machine-readable version of the article encoded using the Text Encoding Initiative (TEI) guidelines. This XML representation includes the article’s title, authors, affiliations, and publication metadata. It also provides a detailed structure of the text, segmented into sections, paragraphs, and subsections, and marks up figures, tables, and formulas. In addition, in-text citations are linked to their respective bibliographic references, and persistent identifiers such as DOIs and ORCIDs are embedded when available.




A JSON file containing citation annotations, which maps each in-text citation pointer  to its context within the article. Specifically, for every citation, this file identifies the section where it appears (first-level section if numbered), the complete sentence in which the citation is found, and the corresponding bibliographic reference. This format serves as a ground truth for tasks such as citation extraction and reference linking.




A JSON-LD file, which provides a Linked Data representation of the article. This file is compliant with the OCDM v2.0.1 specification and is intended to facilitate the integration of scholarly content into semantic web applications and knowledge graphs.



All TEI XML files were generated using Grobid (version 0.8.2), while the JSON and JSON-LD files were produced using the CEX tool. Importantly, each of these files has been carefully manually corrected and refined to ensure accuracy and reliability.
DOI: 10.15468/dl.qh3uuc
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum dilatatum",
 "Country is Switzerland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 38 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000007-250717080932627/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/t13-270-btk
title: Rumex arifolius All.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.u5baz7
title: Occurrence Download

description: A dataset containing 304 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cimicifuga foetida"
 ]
}

 The dataset includes 304 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000008-250717080932627/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27325518
title: Data to Accuracy of Recording Linear Erosion using an Unmanned Aerial Vehicle (UAV)

description: Data to the article "Accuracy of Recording Linear Erosion using an Unmanned Aerial Vehicle (UAV)" (https://doi.org/10.1371/journal.pone.0329286)Data content: DEMs and orthomosaics of croplands as a result of photogrammetry using DJI P4 RTK. Measuring points of terrestrial surveys.
DOI: 10.6084/m9.figshare.27325518.v1
title: Data to Accuracy of Recording Linear Erosion using an Unmanned Aerial Vehicle (UAV)

description: Data to the article "Accuracy of Recording Linear Erosion using an Unmanned Aerial Vehicle (UAV)" (https://doi.org/10.1371/journal.pone.0329286)Data content: DEMs and orthomosaics of croplands as a result of photogrammetry using DJI P4 RTK. Measuring points of terrestrial surveys.
DOI: 10.15468/dl.5yj29z
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum dilatatum",
 "Country is Tonga",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000009-250717080932627/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c52r3p905
title: MassIVE MSV000098547 - A cell wall hydrolase specific to methanogens reveals the structure of archaeal peptidoglycan
title: New hydrolase capable of cleaving the glycan strand of arcPG is described in this study.
DOI: 10.15468/dl.bgyueh
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ACA0808"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000010-250717080932627/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/by8-18t-pjt
title: Leguminosae Juss.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.34740/kaggle/dsv/12495817
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.wktp94
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum dilatatum",
 "Country is Uzbekistan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000011-250717080932627/datasets/export for details.
DOI: 10.3535/5ck-z4l-32q
title: Labiatae Juss.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/ldg-x8h-m6x
title: Labiatae Juss.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/5nj-ec5-5l0
title: Labiatae Juss.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.5tepga
title: Occurrence Download

description: A dataset containing 1470 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Chinese Taipei, China)",
 "TaxonKey is Camphora officinarum"
 ]
}

 The dataset includes 1470 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000012-250717080932627/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/1md-zlb-nj0
title: Labiatae Juss.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/7se-q0r-79p
title: Labiatae Juss.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.34740/kaggle/dsv/12495830
title: e-IPO Indonesia Data - Investment
DOI: 10.15468/dl.cq3y9q
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum dilatatum",
 "Country is Vanuatu",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000000-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/8g9-xyz-rm7
title: Gramineae Juss.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/mpg-qwf-xgt
title: Labiatae Juss.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5281/zenodo.10049926
title: Additional data for "Settling Velocities of Small Microplastic Fragments and Fibers"

description: This repository provides additional files for the publication "Settling Velocities of Small Microplastic Fragments and Fibers" by Stefan Dittmar, Aki Sebastian Ruhl, Korinna Altmann and Martin Jekel (DOI: 10.1021/acs.est.3c09602). Please also see the respective correction of this paper (10.1021/acs.est.5c08557.), which included an update of this repository.

It contains:- single particle raw data from settling experiments (1_settling_data.zip)- drag coefficients computed for each measured MP fragment and fiber (2_drag_coefficients.zip)- guide (.pdf) for preparing microfibers following the protocol by M. Cole (2016, DOI: 10.1038/srep34519) and length measurements of produced fiber fractions (3_cryosectioning.zip)

Please consider the included readme files ('0_README_settling_data.txt',  '0_README_drag_coefficients.txt',  '0_README_length_measurements.txt') and revisit main publication and supplement information for further context on this data set.
DOI: 10.5281/zenodo.16021332
title: Additional data for "Settling Velocities of Small Microplastic Fragments and Fibers"

description: This repository provides additional files for the publication "Settling Velocities of Small Microplastic Fragments and Fibers" by Stefan Dittmar, Aki Sebastian Ruhl, Korinna Altmann and Martin Jekel (DOI: 10.1021/acs.est.3c09602). Please also see the respective correction of this paper (10.1021/acs.est.5c08557.), which included an update of this repository.

It contains:- single particle raw data from settling experiments (1_settling_data.zip)- drag coefficients computed for each measured MP fragment and fiber (2_drag_coefficients.zip)- guide (.pdf) for preparing microfibers following the protocol by M. Cole (2016, DOI: 10.1038/srep34519) and length measurements of produced fiber fractions (3_cryosectioning.zip)

Please consider the included readme files ('0_README_settling_data.txt',  '0_README_drag_coefficients.txt',  '0_README_length_measurements.txt') and revisit main publication and supplement information for further context on this data set.
DOI: 10.3535/v6f-8aj-72p
title: Labiatae Juss.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/ka5-kp6-n2p
title: Labiatae Juss.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15489/kel9qeeou202
title: Polar Monitor - Ice sheet drainage basins - Antarctica, 2010-2021

description: The drainage divides of ice sheets separate the overall glaciated area into multiple sectors. These drainage basins are essential for partitioning mass changes of the ice sheet, as they specify the area over which basin specific measurements are integrated. In (Krieger et al., 2020) we developed a modified watershed algorithm for delineating individual glaciers and applied it to the Northeast Greenland sector. Here we extended the processing to the entire Antarctic Ice Sheet.
DOI: 10.3535/rvr-4ck-hv0
title: Gramineae Juss.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/lsx-hhc-cep
title: Gramineae Juss.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.ewyptc
title: Occurrence Download

description: A dataset containing 491 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Korea, Republic of",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sorbus commixta"
 ]
}

 The dataset includes 491 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000003-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/dans-26y-x2aa
title: Positive-Negative Asymmetry of Contact - Experiment

description: &lt;p&gt;The main aim of the experiment was to test whether there is a stronger effect of negative than positive contact on intergroup attitudes (eg. The ‘positive-negative asymmetry of contact’); and whether these effects of positive and negative contact are moderated by the intensity of the contact experience.&lt;/p&gt;
DOI: 10.15468/dl.9abf9a
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum dilatatum",
 "Country is Zambia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000005-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cxtnat
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum dilatatum",
 "Country is Zimbabwe",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000006-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/d28-tgl-f1l
title: Labiatae Juss.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/d3l-ke4-wqf
title: Labiatae Juss.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/ccdc.csd.cc2hl0mr
title: CCDC 2311224: Experimental Crystal Structure Determination

description: Related Article: Yulong Liu, Wenjun Liu, Binbin Jia, Xiangying Li, Zhou Yang, Yuanzhen Wang, Zishi Wang, Fang Feng, Liu Yang, Ying Fu|2025|J.Mol.Struct.|1331|141556|doi:10.1016/j.molstruc.2025.141556
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/zy1-kl2-2ze
title: Labiatae Juss.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/al4-m2d-9dl
title: Labiatae Juss.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.frnymp
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alyssum argyrophyllum"
 ]
}

 The dataset includes 75 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000008-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16022611
title: Building Site Walking Acoustic and Vibration Recordings

description: This dataset contains recordings of the sound and vibration caused by a walking person, moving on different types of floors in different buildings in different but (for the recordings) standardized ways. Different recording equipment was used including an ambisonic microphone system, a low noise microphone, a comercial vibration measurement system and a self developed vibration measurement system. 

The data created from sound pressure and vibration measurements are stored with a brief description of the data, its origin, its unique identifier, the date and the time periods of the data. These descriptions can be found in accompanying files, depending on the device used for measurement.

Filenames of the relevant measurement files (recordings, accumulated data) will follow this naming convention:

[running index starting anew for each measurement set]_[descriptor according to the type of input]_[additional file information].[file ending]

The data for each measurement set is organized in the following folder structure:

 Measurement_[measurement/site name]     |-> Position_[position index]     |    |-> Accelerometer (comercial vibration measurement system)     |    |    |-> [running index for measurement set]_[type of input]     |    |    |    |-> (measurement files)     |    |-> Andreas (self developed vibration measurement system + ambisonics microphone system)     |    |    |-> WAVs     |    |    |    |-> (recorded wav files)     |    |    |-> WAVs_Calc_Floor (only if vibration could not be measured on floor)     |    |    |    |-> (converted wav files)     |    |-> Low_Noise     |    |    |-> [running index for measurement set]_[type of input]     |    |    |    |-> (measurement files)     |    |-> (optional: additional files like channel information     |-> (optional: additional folders like reverberation time)
DOI: 10.5281/zenodo.16022612
title: Building Site Walking Acoustic and Vibration Recordings

description: This dataset contains recordings of the sound and vibration caused by a walking person, moving on different types of floors in different buildings in different but (for the recordings) standardized ways. Different recording equipment was used including an ambisonic microphone system, a low noise microphone, a comercial vibration measurement system and a self developed vibration measurement system. 

The data created from sound pressure and vibration measurements are stored with a brief description of the data, its origin, its unique identifier, the date and the time periods of the data. These descriptions can be found in accompanying files, depending on the device used for measurement.

Filenames of the relevant measurement files (recordings, accumulated data) will follow this naming convention:

[running index starting anew for each measurement set]_[descriptor according to the type of input]_[additional file information].[file ending]

The data for each measurement set is organized in the following folder structure:

 Measurement_[measurement/site name]     |-> Position_[position index]     |    |-> Accelerometer (comercial vibration measurement system)     |    |    |-> [running index for measurement set]_[type of input]     |    |    |    |-> (measurement files)     |    |-> Andreas (self developed vibration measurement system + ambisonics microphone system)     |    |    |-> WAVs     |    |    |    |-> (recorded wav files)     |    |    |-> WAVs_Calc_Floor (only if vibration could not be measured on floor)     |    |    |    |-> (converted wav files)     |    |-> Low_Noise     |    |    |-> [running index for measurement set]_[type of input]     |    |    |    |-> (measurement files)     |    |-> (optional: additional files like channel information     |-> (optional: additional folders like reverberation time)
DOI: 10.15468/dl.478svk
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rorippa bonariensis burkartii"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000007-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ru3suk
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum distichum",
 "Country is Algeria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000010-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gg2n4x
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum distichum",
 "Country is Albania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000009-250717081556266/datasets/export for details.
DOI: 10.6084/m9.figshare.29567522
title: 16S rRNA for “Granulated straw incorporation with rotary tillage increases the content of soil organic carbon fractions, available nutrients, and shifts bacterial communities in East China”

description: Bacterial DNA was extractedfrom 0.5 g of fresh soilusing Fast® DNA SPIN Kit (MP Biomedicals). The V3-V4 region of the 16S rRNA gene was amplified with bacterial primers 338F (5′-ACTCCTAGGGAGGAGCA-3′) and 806R (5′-GGACTCHVGGGTWTTAT-3′). The PCR products were purified with the Agarose Gel DNA Purification Kit (TaKaRa). High-through paired-end sequencing of the DNA samples was performed at Majorbio Bio Technology Co. Ltd(Shanghai, China). The raw sequences were analyzed by QIIME software (v 1.9.0). After quality filtering, reads were clustered into operational taxonomic units (OTUs) using the closed-reference OTU picking against the Greengene database in QIIME (gg_13_5 version). Then, the community composition of each sample was assessed at each level. Mothur was used to analyze the αdiversity of the bacterialcommunities (Chao1, Simpson and Shannon indexes).
DOI: 10.6084/m9.figshare.29567522.v2
title: 16S rRNA for “Granulated straw incorporation with rotary tillage increases the content of soil organic carbon fractions, available nutrients, and shifts bacterial communities in East China”

description: Bacterial DNA was extractedfrom 0.5 g of fresh soilusing Fast® DNA SPIN Kit (MP Biomedicals). The V3-V4 region of the 16S rRNA gene was amplified with bacterial primers 338F (5′-ACTCCTAGGGAGGAGCA-3′) and 806R (5′-GGACTCHVGGGTWTTAT-3′). The PCR products were purified with the Agarose Gel DNA Purification Kit (TaKaRa). High-through paired-end sequencing of the DNA samples was performed at Majorbio Bio Technology Co. Ltd(Shanghai, China). The raw sequences were analyzed by QIIME software (v 1.9.0). After quality filtering, reads were clustered into operational taxonomic units (OTUs) using the closed-reference OTU picking against the Greengene database in QIIME (gg_13_5 version). Then, the community composition of each sample was assessed at each level. Mothur was used to analyze the αdiversity of the bacterialcommunities (Chao1, Simpson and Shannon indexes).
DOI: 10.6084/m9.figshare.29567522.v1
title: 16S rRNA 用于 “颗粒状秸秆掺入旋耕improve soil organic carbon components，有效养分和转移细菌群落一个 浸出的肉桂土 in a East Cintakeed Cinnamon soil （华东中）”

description: 细菌 DNA中提取从 0.5 g 新鲜土壤使用 Fast® DNA SPIN 试剂盒 （MP Biomedicals）。用细菌引物 338F （5'-ACTCCTAGGGAGGAGCA-3'） 和 806R （5'-GGACTCHVGGGTWTTAT-3'。PCR 产物使用琼脂糖凝胶 DNA 纯化试剂盒 （TaKaRa） 的高直通双端测序 DNA 样品 在 Majorbio Bio Technology Co. Ltd（中国上海）。。使用 QIIME 软件 （v 1.9.0） 对原始序列进行分析。质量过滤后，使用 QIIMEGreengene 数据库的 c 丢失参考 OTU 挑选_13_5 版本 然后，在每个级别评估每个样本的社区组成。Mothur 用于分析α多样性 细菌（Chao1 、 Simpson 和 Shannon 指数）。
DOI: 10.15468/dl.365mrx
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum distichum",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000012-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.