cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/dk6frj4pjg.1
title: Data set for the determination of paleointensities values recorded in three Mexican Quaternary volcanoes using a multi-methodological approach

description: Modeling the evolution and variation of the geomagnetic field throughout the history of our planet requires the use of published paleomagnetic information for declination, inclination, and intensity values of the geomagnetic field. However, the fast and constant development of new paleointensity criteria to determine the data quality has led to discarding and/or using with great caution a large amount of the available information. The publication of raw paleointensity data allows overcoming this problem, since when new quality criteria appear in the literature, the raw data can be re-evaluated, thus enhancing the quality of a dataset. The dataset includes both the raw and the analyzed data.
DOI: 10.17632/k4ns3vcbt9.1
title: LINF_320025900

description: Protein with domain of unknown function (DUF4200)
Leishmania infantum (strain JPCM5)
DOI: 10.17632/pktcb33xhp.1
title: LINF_320025000

description: homolog to Tb5.20
Leishmania infantum (strain JPCM5)
DOI: 10.17632/5scfmv58f9.1
title: Formation of vivianite in digested sludge and its controlling factors in municipal wastewater treatment

description: The data of the survey results published in the linked article are provided in two data sheets: sludge solids and sludge liquor. All methods are provided in the research article.
DOI: 10.17632/pbbfyv2zjs.1
title: Replication Material  ``Trade costs, home bias and the unequal gains from trade''.

description: Folder with replication material for Hillrichs, Vannoorenberghe 2022: ``Trade costs, home bias and the unequal gains from trade''.
DOI: 10.17632/5tghk685mr.1
title: LINF_320024300

description: chaperonin cpn60.1 | HSP60
Leishmania infantum (strain JPCM5)
DOI: 10.17632/p6sgkky8y3.1
title: CR43432_images

description: Deposited here are the images of Drosophila embryo cuticles that accompany the paper "Endogenous transcripts direct microRNA degradation in Drosophila, and this targeted degradation is required for proper embryonic development" (Kingston et al., 2022). Details about image collection can be found in the methods section of the paper. There are two lines (denoted 20 and 25) for both the WT ('WT') and mutant ('mut') genotypes.
DOI: 10.17632/865ntt8w7v.1
title: CDPDS: Coupled dipole method-based photonic dispersion solver

description: We develop and release a photonic band dispersion solver based on the coupled dipole method called CDPDS, which aims to provide an analytical computation of bulk and boundary dispersions and topological phases of a one-dimensional and two-dimensional photonic crystal consisting of an array of particles. The main advantages of CDPDS include (i) a wide coverage of computation that spans the bulk dispersion of a unit cell, boundary dispersion of a supercell comprising one or two types of photonic crystals, and topological phases, (ii) the inclusion of a straightforward graphical user interface that facilitates high accessibility to users who have no expertise in computer programming, and (iii) the addition of built-in options that are useful in examining the photonic dispersions of several widely used systems. The basic principle and computational method incorporated into CDPDS and its performance verification using two distinct photonic crystals are presented in this article. The results indicate that CDPDS will serve as helpful and accessible guidance for computing photonic band dispersions in the fields of conventional and topological photonics.
DOI: 10.17632/r24hszggf4.1
title: QOptCraft: A Python package for the design and study of linear optical quantum systems

description: The manipulation of the quantum states of light in linear optical systems has multiple applications in quantum optics and quantum computation. The package QOptCraft gives a collection of methods to solve some of the most usual problems when designing quantum experiments with linear interferometers. The methods include functions that compute the quantum evolution matrix for n photons from the classical description of the system and inverse methods that, for any desired quantum evolution, will either give the complete description of the experimental system that realizes that unitary evolution or, when this is impossible, the complete description of the linear system which approximates the desired unitary with a locally minimal error. The functions in the package include implementations of different known decompositions that translate the classical scattering matrix of a linear system into a list of beam splitters and phase shifters and methods to compute the effective Hamiltonian that describes the quantum evolution of states with n photons. The package is completed with routines for useful tasks like generating random linear optical systems, computing matrix logarithms, and quantum state entanglement measurement via metrics such as the Schmidt rank. The routines are chosen to avoid usual numerical problems when dealing with the unitary matrices that appear in the description of linear systems.
DOI: 10.17632/szv5kbnh42.1
title: LINF_320026200

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/mzm86rcxxd.1
title: Dataset of Human-written and Synthesized Samples of Free-Text Keystroke Dynamics to Evaluate Liveness Detection Methods

description: This dataset comprises human-written samples of free-text keystroke dynamics, in the form of sentences in natural language, together with their same-text counterparts synthesized using a variety of methods and degrees of partial knowledge of the legitimate user’s behavior. The human-written samples originate in three publicly available datasets that have been previously used in several keystroke dynamics studies, while the corresponding synthesized samples that share the same keystroke sequences have been forged using a variety of methods that were presented in Nahuel González, Enrique P. Calot, Jorge S. Ierache, Waldo Hasperué, Towards liveness detection in keystroke dynamics: Revealing synthetic forgeries, Systems and Soft Computing, Volume 4, 2022, 200037, ISSN 2772-9419, https://doi.org/10.1016/j.sasc.2022.200037.

The source datasets for human-written samples are those of Killourhy and Maxion [2], González and Calot [3], and Banerjee et al. [4]. The first one was used to determine whether composition and transcription tasks produce equivalent results when verifying the identity of the user. The second one was used to evaluate a free-text keystroke dynamics authentication method. The third one was used to find clues of deceptive intent by analyzing variations in typing patterns.

For each human-written sample of each source dataset, synthetic samples sharing the same keystroke sequence  were created with five different methods and included in the dataset here presented. The objective was to evaluate a liveness detection method that could tell apart the legitimate human from a synthetic forgery of his/her behaviour [1]. For each method, five user profiles were used to create the forgeries, representing the amount of partial knowledge of the legitimate users’ keystroke dynamics an attacker might have. These were a between-subject profile, including only samples from users other than the target were available to the attacker, and four within-subject profiles ranging in size from only 100 keystrokes to all the past samples of the legitimate user.
DOI: 10.17632/b67237fxb5.2
title: Data from: Neogene climatic fluctuations and poor connectivity with the centres of diversity shaped the Western Palearctic net-winged beetle fauna

description: Only twenty-two net-winged beetle species (Elateroidea: Lycidae) are known from the Western Palearctic region (WPR), i.e., less than 0.5% of the global lycid diversity and much fewer than from the similar latitudes of East Asia or Northern America. We use the comprehensive distribution data and the molecular phylogeny of ~400 world lycids, including fourteen European species, to provide a new perspective for understanding the structure and evolution of this group in the WPR. All Mediterranean species represent deeply rooted lineages with relatives in Eastern Asia. These species occur in relictual ranges close to the family's Pleistocene refugial edge. The phylogeny points to the loss of biological connection with East Asia since the Mid Miocene. A third of WPR species is widespread in Central and Northern Europe, reaching Eastern Asia, some of them possibly younger elements of the European fauna. Unlike relatively high diversity in the Eocene amber, the extant net-winged beetles represent a small fraction of elateroid diversity in the WPR and are generally rare. Therefore, we assume that most WPR species are relics trapped in Mediterranean refugia since the onset of the Plio-Pleistocene cooling and are critically endangered by the ongoing loss of suitable habitats.
DOI: 10.17632/8dgmcs8ys2.1
title: TTDFT: A GPU accelerated Tucker tensor DFT code for large-scale Kohn-Sham DFT calculations

description: We present the Tucker tensor DFT (TTDFT) code which uses a tensor-structured algorithm with graphic processing unit (GPU) acceleration for conducting ground-state DFT calculations on large-scale systems. The Tucker tensor DFT algorithm uses a localized Tucker tensor basis computed from an additive separable approximation to the Kohn-Sham Hamiltonian. The discrete Kohn-Sham problem is solved using Chebyshev filtered subspace iteration method that relies on matrix-matrix multiplications of a sparse symmetric Hamiltonian matrix and a dense wavefunction matrix, expressed in the localized Tucker tensor basis. These matrix-matrix multiplication operations, which constitute the most computationally intensive step of the solution procedure, are GPU accelerated providing ∼8-fold GPU-CPU speedup for these operations on the largest systems studied. The computational performance of the TTDFT code is presented using benchmark studies on aluminum nano-particles and silicon quantum dots with system sizes ranging up to ∼7,000 atoms.
DOI: 10.17632/vsh6vb9cbv.1
title: PyOECP: A flexible open-source software library for estimating and modeling the complex permittivity based on the open-ended coaxial probe (OECP) technique

description: We present PyOECP, a Python-based flexible open-source software for estimating and modeling the complex permittivity obtained from the open-ended coaxial probe (OECP) technique. The transformation of the measured reflection coefficient to complex permittivity is performed based on three different methods. The software library contains the dielectric spectra of common reference liquids, which can be used to transform the reflection coefficient into the dielectric spectra. Several Python routines that are commonly employed (e.g., SciPy and NumPy) in the field of science and engineering are required only so that the users can alter the software structure depending on their needs. The modeling algorithm exploits the Markov Chain Monte Carlo method for the data regression. The discrete relaxation models can be built by a proper combination of well-known relaxation models. In addition to these models, electrode polarization, a typical measurement artifact for interpreting dielectric spectra, can be incorporated into the modeling algorithm. A continuous relaxation model, which solves the Fredholm integral equation of the first kind (a mathematically ill-posed problem), is also included. This open-source software enables users to freely adjust the physical parameters to obtain physical insight into their materials under test and will be consistently updated for more accurate measurement and interpretation of dielectric spectra in an automated manner. This work describes the theoretical and mathematical background of the software, lays out the workflow, and validates the software functionality based on both synthetic and empirical data included in the software.
DOI: 10.17632/w2z5w546c5.1
title: Alouette: Yet another encapsulated TAUOLA, but revertible

description: We present an algorithm for simulating reverse Monte Carlo decays given an existing forward Monte Carlo decay engine. This algorithm is implemented in the Alouette library, a TAUOLA thin wrapper for simulating decays of τ-leptons. We provide a detailed description of Alouette, as well as validation results.
DOI: 10.17632/zd3xx54j62.1
title: Code & data – Understanding factors influencing the estimated genetic variance and the distribution of breeding values

description: The attached files are different formats of the same Jupyter Notebook.
This document is about finding distribution properties of the genetic relationship matrix (K) and its inverse (used in best linear unbiased prediction (BLUP)) influencing the genetic variance, the estimated heritability (h^2), and the variance of estimated breeding values. The main factors influencing the distribution of estimated breeding values are the phenotypic variance, estimated h^2, and K^-1. Matrices K and K^-1 underwent transformations to find the distribution properties of these two matrices affecting the estimated h^2 and the distribution of estimated breeding values. The wheat data from R package BGLR were used. The inverses of the pedigree-based K (A^-1) and the genomic-based K (G^-1) had similar averages of diagonal and similar averages of off-diagonal elements but very different h^2 estimates. Therefore, the distributions of A^-1 and G^-1 elements were studied closely.
DOI: 10.17632/zd3xx54j62.2
title: Code & data – Understanding factors influencing the estimated genetic variance and the distribution of breeding values

description: The attached files are different formats of the same Jupyter Notebook containing R code.
This document is about finding distribution properties of the genetic relationship matrix (K) and its inverse (used in best linear unbiased prediction (BLUP)) influencing the genetic variance, the estimated heritability (h^2), and the variance of estimated breeding values. The main factors influencing the distribution of estimated breeding values are the phenotypic variance, estimated h^2, and K^-1. Matrices K and K^-1 underwent transformations to find the distribution properties of these two matrices affecting the estimated h^2 and the distribution of estimated breeding values. The wheat data from R package BGLR were used. The inverses of the pedigree-based K (A^-1) and the genomic-based K (G^-1) had similar averages of diagonal and similar averages of off-diagonal elements but very different h^2 estimates. Therefore, the distributions of A^-1 and G^-1 elements were studied closely.
DOI: 10.17632/z6ctc6zz2b.1
title: SEA-SERS

description: Rapid and simple quantitative identification of Listeria monocytogenes in cheese by isothermal sequence exchange amplification based on surface-enhanced Raman spectroscopy
DOI: 10.17632/9wnm4s37j5.1
title: Global, regional, and national burden of alopecia areata and its associated diseases, 1990-2019: a systematic analysis of the Global Burden of Disease Study 2019

description: Supplementary Appendix - Global, regional, and national burden of alopecia areata and its associated diseases, 1990-2019: a systematic analysis of the Global Burden of Disease Study 2019
DOI: 10.17632/bs4hshm249.1
title: Combinatorial therapy with BAR502 and UDCA resets FXR and GPBAR1 signaling and reverses liver histopathology in a dietetic model of non-alcoholic fatty liver disease 

description: Non-alcoholic steatosis (NAFLD) and steatohepatitis (NASH) are two highly prevalent human disorders for which therapy remains suboptimal. In the present study we have compared the effects of BAR502, a dual FXR/GPBAR1 ligand) alone or in combination with ursodeoxycholic acid (UDCA) in a model of NAFLD/NASH induced by feeding mice with a Western diet for 10 weeks.
DOI: 10.17632/x5xxsrt8dw.1
title: Health and Medical Articles on Thai Language Websites

description: 2 Datasets collected from Health and Medical Articles on Thai Language Websites
DOI: 10.15472/hmyvdl
title: Lista de macroinvertebrados acuáticos continentales de Colombia

description: Colombia es uno de los países con mayor número de recursos hídricos en el mundo, siendo los ecosistemas acuáticos continentales naturales (ríos, quebradas, arroyos, lagos, lagunas, humedales) o artificiales (embalses), de los elementos más representativos, con un área estimada de 19.710.972 hectáreas. En estos ecosistemas, los macroinvertebrados son una de las comunidades bióticas más importantes. Estos reúnen taxones de diferentes grupos de invertebrados, entre ellos: platelmintos, nemátodos, anélidos, moluscos y artrópodos, los cuales desarrollan al menos una parte de su ciclo de vida en un cuerpo de agua.
description: Los macroinvertebrados acuáticos son importantes en las cadenas tróficas y son utilizados como bioindicadores de calidad del agua. La información disponible en Colombia sobre taxonomía, riqueza y distribución es insuficiente y dispersa, no es similar en todos los grupos y es necesario profundizar en su estudio. Con el objetivo de organizar, recopilar y difundir la información registrada en la literatura sobre los macroinvertebrados acuáticos se elaboró un listado taxonómico. Se listaron cuatro filos, diez clases, 24 órdenes, 132 familias, 642 géneros, y 1263 especies. 20 especies son consideradas endémicas.
description: La información de este listado está basada en datos disponibles en los principales catálogos, guías, inventarios nacionales y regionales, descripciones originales y de literatura recientemente publicada. Esta recopilación contribuirá a la actualización en aspectos como la taxonomía, la riqueza y la distribución geográfica de los principales grupos de macroinvertebrados acuáticos continentales.
DOI: 10.17632/y58skv2b7g.1
title: Macrobenthic fauna along gradients in Knysna Estuary

description: Data for Abundance-Occupancy relationships along gradients in the Knysna estuarine bay, Garden Route National Park, South Africa.
DOI: 10.17632/ymdmwg5hw3.1
title: Sensing of individual stalled 80S ribosomes by Fap1 for non-functional rRNA turnover (Li et al. )

description: This dataset contains original blot images of western blot and northern blot and indicates how the images are altered to prepare final figures of the manuscript 'Sensing of individual stalled 80S ribosomes by Fap1 for non-functional rRNA turnover (Li et al. )'.
DOI: 10.17632/c2vfpvbrbz.1
title: Evidence of premature lymphocyte aging in people with low anti-spike antibody levels after BNT162b2 vaccination. Huang et al.

description: Supplemental data tables for the paper, "Evidence of premature lymphocyte aging in people with low anti-spike antibody levels after BNT162b2 vaccination"
DOI: 10.17632/4cdsjss84x.1
title: Analyzing Monetary Policy Transmission (or lack of) in India using a Business Cycle Accounting framework

description: Dataset and Matlab Codes for the paper. Codes are based on Matlab codes I got from Pedro Brinca's website for their Handbook Chapter on Business Cycle Accounting.
DOI: 10.5281/zenodo.7072323
title: UMLS Heading Sequences in Spanish

description: UMLS Heading Sequences in Spanish used to compute Word embeddings for the Spanish clinical language
DOI: 10.5281/zenodo.7072322
title: UMLS Heading Sequences in Spanish

description: UMLS Heading Sequences in Spanish used to compute Word embeddings for the Spanish clinical language
DOI: 10.17632/jh3rgs47mj.1
title: Data set used for paper titled- "A Comparative Analysis of Indoor Insect Pests and Illnesses of Inhabitants in Malappuram, Kerala, India"

description: A detailed survey was conducted at 403 randomly chosen indoor systems for a period of approximately 5 months (23-09-2020 to 17-3-2021). The survey covered 322 indoor spaces from 56 rural villages and 81 indoor spaces from 4 municipalities of the city of Malappuram (Coordinates: 11°N 76°E), in the State of Kerala, India. 
The approximately 5-month data was aggregated for statistical analysis using R (version 4.0.5). Chi square test were used to find the significance by using absence/presence of illnesses as the first variable and the absence/presence of insects as the second variable. 
This data set has the data used for the preparation of figures titled:
1- The percentage of indoor inhabitants reporting disease symptoms. 
2- Probable reasons for the appearance of the negative health symptoms as observed by the inhabitants, Allergic Insects , Kind of Allergies
3- Percentage of indoor spaces reporting the presence or absence of Beetles, Ants , mosquitoes and Biological Contaminanats for the presence or absence of indoor spaces with "Zero" or "Atleast one " inhabitant with an illness.
DOI: 10.17632/68g278cx8t.1
title: NIRS Transfusion data set

description: Xcel spread sheet
DOI: 10.17632/9d3zxwyztm.1
title: Frequency stabilization of multiple lasers to a reference atomic transition of Rb

description: All data files of the research article "Frequency stabilization of multiple lasers to a reference atomic transition of Rb"
DOI: 10.17632/hdph7r6rs8.1
title: Rotation Angle and Task Demands Modurating the Influenction of Ordinal Stimuli location on its Encoding

description: The datas of article published on the advance of cognitive psycholoy
DOI: 10.17632/hdph7r6rs8.2
title: Rotation Angle and Task Demands Influence Encoding of Ordinal Stimuli in the Ordinal Stimuli’s Location Activated Context

description: The datas of article published on the advance of cognitive psycholoy
DOI: 10.17632/j89rck96b8.1
title: Rhea Kang Industry Alumni G&E newsletter 2022

description: Full unedited version
DOI: 10.17632/j89rck96b8.2
title: Rhea Kang Industry Alumni G&E newsletter 2022

description: Full unedited version
DOI: 10.17632/7rv8827cbd.2
title: Two-dimensional biomimetic potassium channels at an oil/water interface supported by graphene laminar membranes

description: In this work, a new strategy was proposed herein to mimic K+ channels embedded in biomembrane by using the graphene laminar membrane (GLM) composed of two-dimensional (2D) angstrom(Å)-scale channels to support a simple model of semi-biomembrane, namely oil/water (O/W) interface. Additionally, the ion-transfer voltammetry (ITV) was firstly employed to investigate the transmembrane behaviors of some small cations through GLM with comparison to the measurements of ionic conductivity (G).  Amazingly, we found that K+ is completely preferred over Na+ and Li+ to transfer across the GLM-supported O/W interface although the monovalent ion selectivity of GLM in the W/GLM/W system is still low (K+/Na+~1.11 and K+/Li+~1.35). Moreover, the voltammetric responses for the ion transfer of NH4+ at the GLM-supported O/W interface are also observed as found that NH4+ can pass through the biological K+ channels. The underlying mechanism of as-observed K+-selective voltammetric responses is discussed and found to be consistent with the energy balance of cationic partial-dehydration (energetic cost) and hydrated cation-π interactions (energetic gain) as involved in biological K+ channels. This work provides a novel platform to not only understand the ion discrimination of graphene-based Å-scale channels from a new perspective by using ion-transfer voltammetry but also exploit the potential applications of 2D laminar membranes in the fields of biomimetic ion channel and electrochemical ion sensing or extraction.  Fig. 3(d) and Fig.S3 a-c are the data of PXRD patterns of dry GLM/PET, PET, F-GLM (free-standing GLM) and the GLM/PET after immersion inside deionized water for 48 h.  Fig.4. a-d, Fig. 5a,b, and Fig. S4 and Fig. S5a,b are the I-V characteristics and the corresponding Ionic conductance (G=ΔI/ΔV) values obtained by using GLM/PET or F-GLM under different conditions as described in every Figure.  Fig.6a-d, Fig. 7b, c, and Fig. S6 and Fig. S7 are   the  CVs  and the corresponding DPVs obtained by using GLM/PET or F-GLM under different conditions as described in every Figure.
DOI: 10.17632/w2vhr3t5cz.1
title: Phase 2 Trial of Anakinra for Pustular Psoriasis Supplementary Materials

description: Supplementary Methods, Tables and Figures for Phase 2 Study of Anakinra for Pustular Psoriasis