cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.5sfa44
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Besleria ventricosa"
 ]
}

 The dataset includes 39 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058116-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/hva-wb8-drv
title: Lateroligia ophiogramma (Esper, 1793)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15468/dl.vf7rm7
title: Occurrence Download

description: A dataset containing 539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes vittatus"
 ]
}

 The dataset includes 539 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058117-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/19x-62k-xle
title: Charanyca (Charanyca) trigrammica (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/a6a-f54-92p
title: Achlya flavicornis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/0bd-n2z-xx5
title: Coenonympha iphis [Denis & Schiffermüller], 1776

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15468/dl.bx9xsf
title: Occurrence Download

description: A dataset containing 1274595 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Iran (Islamic Republic of)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1274595 records from 1722 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058050-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rft5z3
title: Occurrence Download

description: A dataset containing 814 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Thryonomys swinderianus (Temminck, 1827)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 814 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034469-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3bhvd
title: Occurrence Download

description: A dataset containing 2368 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-71.18008 -34.46255,-71.20685 -34.46197,-71.19017 -34.47309,-71.19573 -34.47818,-71.21102 -34.46984,-71.20685 -34.47865,-71.2086 -34.51022,-71.22374 -34.54809,-71.25551 -34.55093,-71.25716 -34.56056,-71.26709 -34.56205,-71.25968 -34.57966,-71.25894 -34.57883,-71.22731 -34.57527,-71.2184 -34.58908,-71.16137 -34.58106,-71.12395 -34.57883,-71.11103 -34.57126,-71.14986 -34.53889,-71.17303 -34.54074,-71.17025 -34.53101,-71.15866 -34.52637,-71.10925 -34.50042,-71.06826 -34.51245,-71.04108 -34.52982,-71.05846 -34.55344,-71.05534 -34.55834,-71.03124 -34.56159,-71.02012 -34.55186,-71.0139 -34.51111,-70.9796 -34.512,-71.01479 -34.4728,-71.17164 -34.45733,-71.18008 -34.46255))",
 "OccurrenceStatus is Present",
 "TaxonKey is Chordata"
 ]
}

 The dataset includes 2368 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034470-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b5bez2
title: Occurrence Download

description: A dataset containing 8783191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "KingdomKey is Plantae",
 "Geometry POLYGON((40.574012614 25.0331123010002, 127.229934615 25.0331123010002, 127.229934615 57.5886437030001, 40.574012614 57.5886437030001, 40.574012614 25.0331123010002))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8783191 records from 1131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034429-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.npnph2
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Typomys Thomas, 1911",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034471-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15635652
title: Genomics NCD-gzip database

description: This is a basic database consisting of 4634 genomes sampled from the RefSeq database using the Woltka pipelin. It is intended for testing and evaluation of metagenomic classification tools. 



Contents





The genome sequences are provided in a compressed archive (genomes.tar.gz).




When unpacked, the folder structure is organized by NCBI Taxonomy ID (taxid), like so:






genomes/├── taxid1/│ ├── genome1_0.fna│ └── genome1_1.fna├── taxid2/│ └── genome2_0.fna├── taxid3/│ ├── genome3_0.fna│ ├── genome3_1.fna│ └── genome3_2.fna




Each top-level directory corresponds to a taxonomic ID and contains one or more genome FASTA files in .fna format.




Additional Files








fold1_list.txt and fold1_testing_list.txt: Lists of genome TaxIDs used for training and testing, respectively. These are included to support reproducible benchmarking of metagenomic classifiers.
DOI: 10.5281/zenodo.15635653
title: Genomics NCD-gzip database

description: This is a basic database consisting of 4634 genomes sampled from the RefSeq database using the Woltka pipelin. It is intended for testing and evaluation of metagenomic classification tools. 



Contents





The genome sequences are provided in a compressed archive (genomes.tar.gz).




When unpacked, the folder structure is organized by NCBI Taxonomy ID (taxid), like so:






genomes/├── taxid1/│ ├── genome1_0.fna│ └── genome1_1.fna├── taxid2/│ └── genome2_0.fna├── taxid3/│ ├── genome3_0.fna│ ├── genome3_1.fna│ └── genome3_2.fna




Each top-level directory corresponds to a taxonomic ID and contains one or more genome FASTA files in .fna format.




Additional Files








fold1_list.txt and fold1_testing_list.txt: Lists of genome TaxIDs used for training and testing, respectively. These are included to support reproducible benchmarking of metagenomic classifiers.
DOI: 10.15468/dl.wh8utx
title: Occurrence Download

description: A dataset containing 229 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kassina senegalensis (Duméril & Bibron, 1841)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.5808 -24.13,35.5909 -24.0715,30.5701 -24.0715,30.5701 -28.5786,32.4847 -28.5786,32.55 -28.5222,33.0346 -26.8668,32.9741 -26.7838,33.0415 -26.059,32.9304 -26.0011,32.7994 -26.1281,32.6834 -26.0015,32.813 -25.8728,32.8513 -25.7166,33.3048 -25.3731,35.1489 -24.6699,35.5808 -24.13))"
 ]
}

 The dataset includes 229 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034472-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6mh7uu
title: Occurrence Download

description: A dataset containing 166 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Calyptocephalella gayi (Duméril & Bibron, 1841)"
 ]
}

 The dataset includes 166 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034473-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2m3dz4
title: CCDC 2416356: Experimental Crystal Structure Determination

description: Related Article: Hawraa S. Al-Buthabhak, Karrar Al-Ameed, Yu Yu, Alexandre N. Sobolev, Stephen A. Moggach, Hani Al-Salami, Vito Ferro, Murray V. Baker|2025|RSC Advances|15|18123|doi:10.1039/D5RA02655E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m3f06
title: CCDC 2416357: Experimental Crystal Structure Determination

description: Related Article: Hawraa S. Al-Buthabhak, Karrar Al-Ameed, Yu Yu, Alexandre N. Sobolev, Stephen A. Moggach, Hani Al-Salami, Vito Ferro, Murray V. Baker|2025|RSC Advances|15|18123|doi:10.1039/D5RA02655E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m3f17
title: CCDC 2416358: Experimental Crystal Structure Determination

description: Related Article: Hawraa S. Al-Buthabhak, Karrar Al-Ameed, Yu Yu, Alexandre N. Sobolev, Stephen A. Moggach, Hani Al-Salami, Vito Ferro, Murray V. Baker|2025|RSC Advances|15|18123|doi:10.1039/D5RA02655E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m3f28
title: CCDC 2416359: Experimental Crystal Structure Determination

description: Related Article: Hawraa S. Al-Buthabhak, Karrar Al-Ameed, Yu Yu, Alexandre N. Sobolev, Stephen A. Moggach, Hani Al-Salami, Vito Ferro, Murray V. Baker|2025|RSC Advances|15|18123|doi:10.1039/D5RA02655E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.em3zd7
title: Occurrence Download

description: A dataset containing 962419 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aedes Meigen, 1818"
 ]
}

 The dataset includes 962419 records from 554 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034461-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ddasx6
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea retinodes Slooten"
 ]
}

 The dataset includes 82 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0172429-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jy6atc
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oriolus isabellae Ogilvie-Grant, 1894"
 ]
}

 The dataset includes 31 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0381423-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dp4qkd
title: Occurrence Download

description: A dataset containing 280 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fritillaria cirrhosa D.Don",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 280 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085092-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.es22pm
title: Occurrence Download

description: A dataset containing 870376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 {
 "or" : [
 "Month is January",
 "Month is February",
 "Month is March",
 "Month is April"
 ]
 },
 "Year 2021-2022"
 ]
}

 The dataset includes 870376 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0177419-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sw8zfs
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Polyommatus violetae (Bustillo, Hermosa & Borrego, 1979)"
 ]
}

 The dataset includes 71 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0173244-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p94hz4
title: Occurrence Download

description: A dataset containing 17093 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Spinus xanthogastrus",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 17093 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085082-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vqemga
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is BRA.12_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Oecomys catherinae Thomas, 1909"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0201832-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.de7cda
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is RMT Trawl catch from the 1983/84 V5 ADBEX II voyage"
 ]
}

 The dataset includes 138 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0173249-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25326/321
title: LIAISE_LA-CENDROSA_CNRM_LIDARwindcube-TKE_L2

description: This dataset contains tke calculated from the high resolution measurements made by windcube v2 lidar manufactured by Leosphere and deployed by CNRM/GMEI/LISA during the LIAISE field campaign at la cendrosa. Measurements are given in 2D.
DOI: 10.15468/dl.apyyvz
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plectranthus reflexus van Jaarsv. & T.J.Edwards"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085065-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.stqre5
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-47.85645 -13.60061,-45.4834 -17.99702,-40.12207 -20.733,-38.71582 -13.00188,-36.25488 -10.42029,-34.93652 -8.60003,-34.76074 -5.98488,-39.28711 -2.6742,-44.25293 -2.65499,-47.85645 -13.60061))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Urubitinga Gray, 1840"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0177350-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5u5pwp
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chimonanthus salicifolius S.Y.Hu"
 ]
}

 The dataset includes 36 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0173251-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kudfks
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plectranthus scaposus Hedge"
 ]
}

 The dataset includes 19 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085085-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.455cx6
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex utahensis Reznicek & D.F.Murray"
 ]
}

 The dataset includes 29 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0177400-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b7kyxn
title: Occurrence Download

description: A dataset containing 53895 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Myctobase, a circumpolar database of mesopelagic fishes for new insights into deep pelagic prey fields - data"
 ]
}

 The dataset includes 53895 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133819-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jxtx2n
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plectranthus schweinfurthii Sprenger"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085091-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nct7sz
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Magnoliopsida, Liliopsida, Gnetopsida, Cycadopsida, Cycadopsis Debey, 1848, Pinopsida, Ginkgoopsida)",
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "Geometry MULTIPOLYGON (((-155.684 63.193, -155.496 63.032, -153.527 63.032, -153.732 63.605, -154.229 63.605, -155.2961 63.382, -155.887 63.429, -155.684 63.193)))"
 ]
}

 The dataset includes 24 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0177367-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3swwk4
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Equilabium scopulicola (A.J.Paton) Mwany. & A.J.Paton"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085094-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5fvdg
title: Occurrence Download

description: A dataset containing 1724 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Macropus agilis (Gould, 1841)"
 ]
}

 The dataset includes 1724 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005469-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7kthh4
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Magnoliopsida, Liliopsida, Gnetopsida, Cycadopsida, Cycadopsis Debey, 1848, Pinopsida, Ginkgoopsida)",
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "Geometry MULTIPOLYGON (((-126.3323 59.89523, -125.4279 60.24886, -125.675 60.86581, -126.179 61.05479, -126.8297 60.88736, -126.3323 59.89523)))"
 ]
}

 The dataset includes 127 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0177365-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.