cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16430052.v1
title: Magnetic measurements of AMB-1 suspensions (wild type and mutant)

description: Vibrating Sample Magnetometer (VSM) measurements of cell suspensions prepared from cultures of Magnetospirillum magneticum strain AMB-1 (wild type and ∆mamJ∆limJ∆MIS mutant).
DOI: 10.6084/m9.figshare.3851784.v1
title: Accounting Network

description: Datasets for "The Accounting Network: how financial institutions react to systemic crisis"<br>
DOI: 10.6084/m9.figshare.1285695.v1
title: Health economics: the cheerful face of the dismal science? [Lecture]

description: These are the slides and LaTeX source files (without copyrighted image files) from an introductory lecture that I gave to a group of non-economists (namely, postgraduate medical physicists) at the University of Liverpool in October 2014. The lecture consisted largely of Alan Williams quotes. In the lecture I discussed the scope of each part of Williams's plumbing diagram and gave an example of some recent research that might fall into this category. I then discussed some of the tensions and trade-offs that economists deal with, and presented some of the concepts used by health economists; arguing that these aspects make the subject potentially more interesting to the students than other subdisciplines of economics.
DOI: 10.6084/m9.figshare.5258020.v1
title: Bondi accretion, numerical hydrodynamic simulations

description: Spherically symmetric hydrodynamical simulations of Bondi accretion, performed in two and three dimensions, using the PLUTO code. <br>These simulations reproduce the B1 and G3 cases of Ruffert et al. 1994 ApJ.<br>Part of MsC dissertation work of Henrique Gubolin, under the supervision of Prof. Rodrigo Nemmen.<br>Included are:• DBL datasets with grids, density, velocities and pressure fields• initial and boundary condition information necessary to reproduce the simulations with Pluto• movies showing the evolution of some fields
DOI: 10.6084/m9.figshare.7814960.v1
title: Data from Sphingosine kinase and sphingosine-1-phosphate regulate epithelial cell architecture by the modulation of de novo sphingolipid synthesis

description: Sphingolipids regulate several aspects of cell behavior and it has been demonstrated that cells adjust their sphingolipid metabolism in response to metabolic needs. Particularly, sphingosine-1-phosphate (S1P), a final product of sphingolipid metabolism, is a potent bioactive lipid involved in the regulation of various cellular processes, including cell proliferation, cell migration, actin cytoskeletal reorganization and cell adhesion. In previous work in rat renal papillae, we showed that sphingosine kinase (SK) expression and S1P levels are developmentally regulated and control de novo sphingolipid synthesis. The aim of the present study was to evaluate the participation of SK/S1P pathway in the triggering of cell differentiation by external hypertonicity. We found that hypertonicity evoked a sharp decrease in SK expression, thus activating the de novo sphingolipid synthesis pathway. Furthermore, the inhibition of SK activity evoked a relaxation of cell-cell adherens junction (AJ) with accumulation of the AJ complex (E-cadherin/β-catenin/α-catenin) in the Golgi complex, preventing the acquisition of the differentiated cell phenotype. This phenotype alteration was a consequence of a sphingolipid misbalance with an increase in ceramide levels. Moreover, we found that SNAI1 and SNAI2 were located in the cell nucleus with impairment of cell differentiation induced by SK inhibition, a fact that is considered a biochemical marker of epithelial to mesenchymal transition. So, we suggest that the expression and activity of SK1, but not SK2, act as a control system, allowing epithelial cells to synchronize the various branches of sphingolipid metabolism for an adequate cell differentiation program.
DOI: 10.6084/m9.figshare.28015541.v1
title: A knowledge graph for crop diseases and pests in China

description: A knowledge graph for crop diseases and pests in 
China
DOI: 10.6084/m9.figshare.25406398.v1
title: Abiola Isawumi - Data on Resensitization of fluoroquinolones+carbapenems with riboflavin against MDR <i>Shigella</i> and <i>Salmonella</i> spp

description: Data showing how riboflavin can be used to increase effectiveness of fluoroquinolones and carbapenems against infections caused by Shigella and Salmonella species
DOI: 10.25375/uct.13573337.v1
title: RISK11 signature scores for the biomarker-guided tuberculosis preventive therapy (CORTIS) randomised controlled trial

description: RISK11 transcriptomic signature scores for 20,207 volunteers who were screened at five geographically diverse sites across South Africa. Signature scores were computed from QC'ed gene expression measurements performed by microfluidic RT-qPCR on mRNA derived from whole blood collected in PAXgene tubes. Participants were randomised into three groups and followed-up for 15 months to evaluate diagnostic and prognostic performance of RISK11 and to evaluate efficacy of high-dose isoniazid and rifapentine for prevention of incident TB.
DOI: 10.6084/m9.figshare.13720780.v1
title: S3: Hair cortisol measurements raw data from Life expectancy, family constellation and stress in giant mole-rats (<i>Fukomys mechowii</i>)

description: Giant mole-rats (<i>Fukomys mechowii</i>) are remarkably long-lived subterranean rodents (maximum recorded lifespan as reported here greater than 26 years) that live in families with one reproductive pair (breeders) and their non-reproductive offspring (non-breeders). Previous studies have shown that breeders live on average approximately twice as long as non-breeders, a finding contradicting the classic trade-off between reproduction and lifespan. Because recent evidence points to the hypothalamic-pituitary-adrenal axis as playing an important role in shaping the pace of ageing in mole-rats, we analysed the influence of the social environment of giant mole-rats on intrafamilial aggression levels, indicators of long-term stress, and, ultimately, mortality. Behavioural data indicated that family constellation, especially the presence or the absence of parents, influences agonistic behaviour. As a measure of long-term stress, we established a non-invasive method of extracting and measuring cortisol from hair of giant mole-rats. Interestingly, orphaned non-breeders exhibited significantly lower levels of cortisol and lower mortality rates than did non-breeders living with both parents. Because hypercortisolism is harmful in the long-term, intrafamilial stress could help explain the earlier onset of senescence in non-breeders, resulting in a shorter lifespan. Our findings suggest that the social environment should be considered as a further factor in ageing studies involving group-living animals.
DOI: 10.6084/m9.figshare.14393111.v1
title: Supplementary Material for: Autologous Retinal Transplantation with the Use of Air Tamponade for the Treatment of a Primary Large Chronic Macular Hole

description: The purpose of this case report is to describe a chandelier-assisted bimanual autologous retinal transplantation (ART) with air tamponade technique for the treatment of a large macular hole (MH). A patient with a primary chronic large MH, who underwent chandelier-assisted bimanual ART with the use of air tamponade is described. The MH diameter was 888 μm. Changes in best-corrected visual acuity (BCVA) were measured postoperatively; clinical pictures and optical coherence tomography were analyzed. Baseline preoperative BCVA was 20/400. Closure of the MH was achieved. At 7 months, post-surgery BCVA improved to 20/50. Optical coherence tomography examinations showed the integration of the autologous transplant with the adjacent macular tissue and continuity preservation of the ellipsoid layer. In conclusion, chandelier-assisted bimanual ART with air tamponade technique was effective in achieving complete MH closure and long-term visual improvement.
DOI: 10.6084/m9.figshare.13345307.v1
title: Garrison-et-al--AJB2020--SERCtower-data.csv

description: Meteorological data from the SERC weather tower. Data obtained with permission from the SERC website (https://serc.si.edu/gcrew/phragmitesdata) on April 4, 2019.<br>
DOI: 10.6084/m9.figshare.1396587.v2
title: Mitchell River catchment threat data

description: The file describes the binary occurrence (1/0) of 5 threatening processes (anonymous) in 2316 Planning Units of the Mitchell River catchment (northern Australia).
DOI: 10.6084/m9.figshare.19634655.v1
title: Supplementary Material for: Methodological quality of fetal brain structure charts for screening examination and targeted neurosonography: a systematic review

description: Introduction: The methodological quality of fetal brain charts has not been critically appraised yet. Material and methods: MEDLINE, EMBASE, CINAHL and the Web of Science databases were searched electronically up to December 31, 2020. The primary outcome was to evaluate the methodology of the studies assessing the growth of fetal brain structures throughout gestation. A list of 28 methodological quality criteria divided into three domains according to “study design”, “statistical and reporting methods”, and “specific relevant neurosonography aspects” was developed in order to assess the methodological appropriateness of the included studies. The overall quality score was defined as the sum of low risk of bias marks, with the range of possible scores being 0–28. This quality assessment was applied to each individual study reporting reference ranges for fetal brain structures. Results: Sixty studies were included in the systematic review. The overall mean quality score of the studies included in this review was 51.3%. When focusing on each of the assessed domains, the mean quality score was 53.7% for “study design”, 54.2% for “statistical and reporting methods” and 38.6% for “specific relevant neurosonography aspects”. The sample size calculation, the correlation with a postnatal imaging evaluation and the whole fetal brain assessment were the items at the highest risk of bias for each domain assessed, respectively. The subgroup analysis according to different anatomical location showed the lowest quality score for ventricular and periventricular structures and the highest for cortical structures. Conclusions: Most previously published studies reporting fetal brain charts suffers from poor methodology and are at high risk of biases, mostly when focusing on neurosonography issues. Further prospective longitudinal studies aiming at constructing specific growth charts for fetal brain structures should follow rigorous methodology to minimize the risk of biases, guarantee higher levels of reproducibility and improve the standard of care.
DOI: 10.6084/m9.figshare.23560179.v1
title: Complete DataSet - Mining Association Rules in USA.rar

description: Complete USA data set - used to mine association rules
DOI: 10.6084/m9.figshare.5128243.v1
title: Supplementary Material for: Schizophrenia-Like Symptoms in Narcolepsy Type 1: Shared and Distinctive Clinical Characteristics

description: <b><i>Background/Aims:</i></b> The occurrence of psychotic symptoms in narcolepsy type 1 (NT1) has been reported as responsible for delayed diagnosis due to the misdiagnosis of schizophrenia. This study aimed to identify shared and distinctive clinical characteristics between NT1 and schizophrenia, with the focus on psychotic symptoms. <b><i>Methods:</i></b> A total of 28 NT1 and 21 schizophrenia patients were included. Hallucination characteristics and PANSS (Positive and Negative Syndrome Scale), HRSD (Hamilton Rating Scale for Depression), DES (Dissociative Experiences Scale), and STAI (State-Trait Anxiety Inventory) scores were collected. Symptom overlap was investigated by χ<sup>2</sup>, Fisher's or t tests and multiple logistic regression models. <b><i>Results:</i></b> Hallucinations and illusions frequently occurred in both diseases. Unimodal hallucinations were more common in schizophrenia (p = 6.30e-07) and multimodal hallucinations in NT1, but no clear difference was identified in their sensory modality. Hypnagogic/hypnopompic hallucinations were typical of NT1 (p = 5.22e-07), and 25% of NT1 patients exhibited some degree of insight deficit. Hypnagogic/hypnopompic hallucinations, unimodal hallucinations and PANSS score were the most distinctive clinical characteristics. Clinical overlap was found in the dissociative and anxiety domains, while higher depressive scores were observed in schizophrenia. <b><i>Conclusion:</i></b> The overlap between NT1 and schizophrenia should be further investigated under a clinical and pathogenetic point of view to improve diagnostic and therapeutic approaches.
DOI: 10.6084/m9.figshare.8974811.v1
title: HBCx_95_CapaR_scChIPseq_mm10_50kb.tsv

description: The samples correspond to the mouse cells from patient-derived xenograft (PDX) originating from two different human donors. The HBCx-22 and HBCx-22-TamR datasets correspond to mouse cells from a pair of luminal ER<sup>+</sup> breast PDXs: HBCx-22, responsive to Tamoxifen and HBCx-22-TamR, resistant to Tamoxifen. The HBCx-95 and HBCx-95-CapaR correspond to a triple-negative breast cancer (TNBC) tumor model of acquired resistance to chemotherapy. Row names of the matrices are 50,000-bp binned regions; Column names are barcodes corresponding to single cell; Cells contains raw counts, in mm10 reference.
DOI: 10.5281/zenodo.13284445
title: Accompanying data for publication: "Learning the Optimal Power Flow: Environment Design Matters"

description: All the data created for the publication "Learning the Optimal Power Flow: Environment Design Matters" by Wolgast and Nieße. The dataset contains all training runs performed, including the final neural network weights, meta-data about the training run, and various metrics during the course of training, which were used to generate the results and plots. The source code to re-produce the plots for the publication (and everything else) can be found on GitHub: https://github.com/Digitalized-Energy-Systems/rl-opf-env-design
DOI: 10.5281/zenodo.13284446
title: Accompanying data for publication: "Learning the Optimal Power Flow: Environment Design Matters"

description: All the data created for the publication "Learning the Optimal Power Flow: Environment Design Matters" by Wolgast and Nieße. The dataset contains all training runs performed, including the final neural network weights, meta-data about the training run, and various metrics during the course of training, which were used to generate the results and plots. The source code to re-produce the plots for the publication (and everything else) can be found on GitHub: https://github.com/Digitalized-Energy-Systems/rl-opf-env-design
DOI: 10.6084/m9.figshare.25025966.v1
title: Financial dataset for propensity.xlsx

description: The data sets are the information on banking and financial history of customers. This can be used to take relevant decisions based on the history of customer with the bank.
DOI: 10.6084/m9.figshare.14446794.v1
title: Supplementary Material for: R-Ras Deficiency in Pericytes Causes Frequent Microphthalmia and Perturbs Retinal Vascular Development

description: <b><i>Purpose:</i></b> The retinal vasculature is heavily invested by pericytes. Small GTPase R-Ras is highly expressed in endothelial cells and pericytes, suggesting importance of this Ras homolog for the regulation of the blood vessel wall. We investigated the specific contribution of pericyte-expressed R-Ras to the development of the retinal vasculature. <b><i>Methods:</i></b> The effect of R-Ras deficiency in pericytes was analyzed in pericyte-targeted conditional <i>Rras</i> knockout mice at birth and during the capillary plexus formation in the neonatal retina. <b><i>Results:</i></b> The offspring of these mice frequently exhibited unilateral microphthalmia. Analyses of the developing retinal vasculature in the eyes without microphthalmia revealed excessive endothelial cell proliferation, sprouting, and branching of the capillary plexus in these animals. These vessels were structurally defective with diminished pericyte coverage and basement membrane formation. Furthermore, these vessels showed reduced VE-cadherin staining and significantly elevated plasma leakage indicating the breakdown of the blood-retinal barrier. This defect was associated with considerable macrophage infiltration in the retina. <b><i>Conclusions:</i></b> The normal retinal vascular development is dependent on R-Ras expression in pericytes, and the absence of it leads to unattenuated angiogenesis and significantly weakens the blood-retinal barrier. Our findings underscore the importance of R-Ras for pericyte function during the normal eye development.
DOI: 10.6084/m9.figshare.15168033.v1
title: An Examination of Determinants for E-Wallet Adoption In Malaysia

description: The final result of analysis based on the dataset that collected through online questionnaire.
DOI: 10.6084/m9.figshare.28218095.v1
title: Urban Media Facade User Satisfaction Survey Dataset (2024)

description: This dataset contains survey results examining user satisfaction with urban media facades. The research investigates public perception and satisfaction levels regarding media facades in urban environments through questionnaire surveys. The data includes responses from 100 participants, covering demographic information, satisfaction ratings, and user feedback on various aspects of urban media facades. The survey was conducted using structured questionnaires, and the raw data is stored in SPSS format (.sav file), suitable for statistical analysis.
DOI: 10.6084/m9.figshare.12221789.v1
title: Data for topographic profiles, and input parameters for area balance calculations

description: The files contain the data used to perform area balance calculations on the grabens of Elysium Fossae, Mars, as discussed in the paper 'Subsurface Geometry and Emplacement Conditions of a Giant Dike System in Elysium Fossae, Mars'. The file 'Elysium_Fossae_Topographic_Profiles_1-23.xlsx' contains, in each tab, the projected PEDR points used to construct the topographic profiles described in the text. The file 'Elysisum_Fossae_Area_Balance_Inputs.xlsx', contains the main input parameters for said area balance calculations. Namely; the positions of the upper left and right fault scarps given as (X,Y) values, in which each represents the point along the profile topography, and the elevation, respectively, of each fault scarp, and the depth of each structure. 23 topographic profiles contain a total of 29 structures.
DOI: 10.6084/m9.figshare.25138106.v1
title: Supplementary Material for: Multiplex proteomics in the identification of potential biomarkers of very severe sinusoidal obstruction syndrome/veno-occlusive disease (SOS/VOD) in allogeneic hematopoietic cell transplant patients treated with defibrotide

description: Introduction
Despite well-established clinical criteria for diagnosis of SOS/VOD following allogeneic HCT, there is a lack of established diagnostic protein biomarkers.

Methods
Prospective samples were collected from patients with very severe SOS/VOD at diagnosis and days +3, +7, +14, and +30 post-initiation of defibrotide. Samples from age-matched controls with no VOD were collected at day +14, +30, +60, +90 and +180 following allogeneic HCT. Serum samples were analyzed for 2925 protein levels by antibody-based proximity extension assay (PEA). Mean differences in the log-transformed abundance values were compared using t-tests in a volcano plot. 

Results
Five patients with very severe SOS/VOD and five control patients were compared. Ten proteins were identified that showed a statistically significant and log-transformed 3-fold increase in concentration. They were CALCA, CCL20, GPR37, IGFBP4, IL1RL1, SLC39A14, SPINK4, FABP3, MYL3, and CHCHD10. Four different proteins, namely CD83, LAIR2, CD7, and HEM6 showed a significant decrease with defibrotide treatment. SOS/VOD resolved in 80% (n=4) of patients, while one patient deceased due to SOS/VOD.

Conclusion
PEA technology identified 10 proteins that were significantly elevated in patients with very severe SOS/VOD. Prospective studies in a larger cohort using this technology may be able to conclusively identify diagnostic protein biomarkers for SOS/VOD.
DOI: 10.6084/m9.figshare.26196467.v1
title: JEN-2024-0208.xlsx

description: We report on the relative abundance of insect floral visitors in the aonla ecosystem, the influence of abiotic variables on the foraging behavior of bees, and the influence of bee pollination in the yield improvement of aonla. This is significant because aonla being a minor crop that possesses high medicinal value has specific pollination needs that might be met by particular pollinators. Studying these relationships ensures effective pollination and optimal yields.
DOI: 10.6084/m9.figshare.14938038.v1
title: Supplementary Material for: Estimated Prevalence and Incidence of Amyotrophic Lateral Sclerosis and SOD1 and C9orf72 Genetic Variants

description: <b><i>Introduction:</i></b> Amyotrophic lateral sclerosis (ALS) is a rare neurological disorder characterized by progressive deterioration of motor neurons. Assessment of the size/geographic distribution of the ALS population, including ALS with genetic origin, is needed to understand the burden of the disease and the need for clinical intervention and therapy. <b><i>Objectives:</i></b> The main objective of this study was to estimate the number of prevalent and incident ALS cases overall and superoxide dismutase 1 (SOD1) and chromosome 9 open reading frame 72 (C9orf72) ALS in 22 countries across Europe (Belgium, France, Germany, Ireland, Italy, Netherlands, Norway, Russia, Spain, Sweden, and UK), North America (USA and Canada), Latin America (Argentina, Brazil, Colombia, Mexico, and Uruguay), and Asia (China, Japan, South Korea, and Taiwan). <b><i>Methods:</i></b> A comprehensive literature search was conducted to identify population-based studies reporting ALS prevalence and/or incidence rates. Pooled prevalence and incidence rates were obtained using a meta-analysis approach at the country and regional geographic level. A country-level pooled estimate was used when ≥2 studies were available per country and geographic regional pooled estimates were used otherwise. The proportion of cases with a SOD1 or C9orf72 mutation among sporadic (sALS) and familial (fALS) cases were obtained from a previous systematic review and meta-analysis. <b><i>Results:</i></b> Pooled prevalence rates (per 100,000 persons) and incidence rates (per 100,000 person-years) were 6.22 and 2.31 for Europe, 5.20 and 2.35 for North America, 3.41 and 1.25 for Latin America, 3.01 and 0.93 for Asian countries excluding Japan, and 7.96 and 1.76 for Japan, respectively. Significant heterogeneity in reported incidence and prevalence was observed within and between countries/geographic regions. The estimated number of 2020 ALS cases across the 22 countries is 121,028 prevalent and 41,128 incident cases. The total estimated number of prevalent SOD1 cases is 2,876 cases, of which, 1,342 (47%) were fALS and 1,534 (53%) were sALS, and the number of incident SOD1 cases is 946 (434 [46%] fALS and 512 [54%] sALS). The total estimated number of prevalent C9orf72 cases is 4,545 (1,198 [26%] fALS, 3,347 [74%] sALS), and the number of incident C9orf72 cases is 1,706 (450 [26%] fALS and 1,256 [74%] sALS). <b><i>Discussion:</i></b> The estimated number of patients with SOD1 and C9orf72 ALS suggests that although the proportions of SOD1 and C9orf72 are higher among those with fALS, the majority of SOD1 and C9orf72 ALS cases may be found among those with sALS (about 53 and 74%, respectively). These results suggest that classification of fALS based on reported family history does not capture the full picture of ALS of genetic origin.