cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7488/ds/7678
title: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens (ANI 99% MAGs: ENA project PRJEB64517)

description: XCR1+ dendritic cells play an important role in limiting the immune response to members of the gut microbiota, preventing inflammation and maintaining gut homeostasis. Mice lacking XCR1+ cDCs have a proinflammatory gut environment and are prone to opportunistic infections by commensals. As chickens contain greater numbers of these cells in their guts than mammals, it is expected that they would play a larger role in controlling gut inflammation. Increased inflammation caused by a lack of these cells is expected to select against commensal bacteria and promote opportunistic pathogen growth. Raw sequencing files, primary assemblies and metagenome assembled genomes (MAGs) that were dereplicated at the species level (95% ANI) have been uploaded to the European Nucleotide Archive (project PRJEB64517). This dataset contains all MAGs produced from this project, dereplicated at a strain level (99% ANI).
description: All 670 MAG files are supplied as fa.gz files within MAG_ANI_FASTA_FILES.zip. Checkm2 quality information is also provided for each file: quality_report.tsv. Taxonomic classifications, as produced by gtdb-tk are stored in gtdb_99.ar53.summary.tsv and gtdb_99.bac120.summary.tsv. For metadata on chicken samples from which these MAGs were produced, see ENA project PRJEB64517.
DOI: 10.18746/bmth.data.00000314
title: Can a novel infant CPR retraining strategy result in longer skill retention?
DOI: 10.25403/upresearchdata.24998876.v1
title: Empirische studie zur rolle der Geistesgaben in der urbanen mission

description: Transkript und codierte segmente einer empirischen untersuchung. Es wurden experteninterviews geführt die nach der qualitativen inhaltsanalyse nach mayring ausgewertet wurden.
DOI: 10.25403/upresearchdata.24998876
title: Empirische studie zur rolle der Geistesgaben in der urbanen mission

description: Transkript und codierte segmente einer empirischen untersuchung. Es wurden experteninterviews geführt die nach der qualitativen inhaltsanalyse nach mayring ausgewertet wurden.
DOI: 10.57745/sotxba
title: README_EN.txt

description: :unav
DOI: 10.57745/aq3pmz
title: Fig13cd.TXT

description: :unav
DOI: 10.57745/axylxj
title: Fig12.txt

description: :unav
DOI: 10.57745/vw4tf9
title: Fig13ab.txt

description: :unav
DOI: 10.6084/m9.figshare.25126052
title: Supplementary Material for: The efficacy and safety of Chinese eye exercise of acupoints in dry eye patients: a randomized controlled trial.

description: Abstract
Introduction: Dry eye disorder (DED) is a growing global issue linked to excessive digital screen time. Chinese eye exercise of acupoint (CEA), a set of self-massages on shared CA acupoints, has been used to reduce visual-related ocular symptoms and possibly as an alternative treatment for DED. This study aimed to assess the efficacy and safety of CEA. 
Methods: 
A single-blind randomized controlled trial was conducted at Thammasat University Hospital in Thailand, recruiting 56 participants aged 20-60 years, equally divided into two groups: the treatment group with CEA and the control group with standard lid hygiene treatment (STD). The intervention program lasted 12 weeks. Main outcome measures: Ocular surface disease index (OSDI), tear break-up time (TBUT), Schirmer I test (SIT), corneal surface staining (CSS), and self-recorded forms for safety and adverse effects were measured at baseline, week 4 and week 12. An independent sample t-test, paired t-test, and repeated measures (ANOVA) were used to compare results between both groups, study visits, and primary and secondary outcome measurements, respectively. P-values &lt; 0.05 were considered statically significant.
Results: The characteristics were not statistically different between both groups at the baseline. The mean OSDI scores were significantly reduced in both groups at week 4 and week 12 compared to baseline (p-value &lt; 0.05). Additionally, both CEA and STD showed significant improvement in TBUT and SIT (p-value &lt; 0.05). CSS was significantly improved only in the CEA groups (p-value &lt; 0.05). No significant differences were observed between the study groups, except for SIT at week 12 (p-value &lt; 0.05). For the safety, there were no adverse side effects in either group.
Conclusion: CEA seemed to be as effective as STD in improving the OSDI, TBUT and SIT of DED without causing any side effects.
DOI: 10.34740/kaggle/dsv/7530382
title: 2021 World Population (updated daily)
DOI: 10.6084/m9.figshare.25126073
title: Supplementary Material for: Chronic Liver Disease in Patients with Prolidase Deficiency: A Case Series

description: <b><i>Introduction:</i></b> Prolidase deficiency is a rare autosomal recessive disorder caused by variants in the <i>PEPD</i> gene. Patients usually have multi-organ involvement and a wide range of clinical features including recurrent skin ulcers, dysmorphic facial features, recurrent infections, intellectual disability, and splenomegaly. Studies have shown that patients with prolidase deficiency may have hepatic manifestations including hepatomegaly and abnormal liver enzymes. However, there is no detailed description of liver disease in this patient population. <b><i>Case Presentation:</i></b> Here, we present 3 patients with prolidase deficiency with varying extents of hepatic involvement. <b><i>Conclusion:</i></b> Prolidase deficiency patients with liver disease should be followed up long term to understand more about the pathophysiology and the impact of liver disease on long-term outcomes.
DOI: 10.5255/ukda-sn-856913
title: Investigating Children’s Attitudes and Learning About Soil Invertebrates, 2022-2023

description: Soil invertebrates play a central role in terrestrial ecosystem functioning but public awareness about the importance of soil invertebrates is low and they are neglected in conservation research and policy. This study investigated children’s perceptions of soil invertebrates and the impact of an educational intervention, using a psychometric questionnaire, interviews and learner-generated drawings.
DOI: 10.34740/kaggle/dsv/7530407
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.5281/zenodo.10605478
title: Chlorine's affinity for iron during Earth's core formation from ab initio simulation

description: Table S1 contains the fitted parameters of a local third-order finite strain expression, corresponding a Birch-Murnaghan equation-of-state for the metallic and silicate system at 10-134 GPa and 3000-5000 K. Table S2-S3 show the detailed data of two-phase coexistence simulations. Table S4 shows the detailed data of gibbs free energy change and  partition coefficient Table S5 shows the raw data of thermodynamic integration calculations. Table S6 shows the compilation of dataset from ab initio simulations and previous experiments.
DOI: 10.5281/zenodo.10605479
title: Chlorine's affinity for iron during Earth's core formation from ab initio simulation

description: Table S1 contains the fitted parameters of a local third-order finite strain expression, corresponding a Birch-Murnaghan equation-of-state for the metallic and silicate system at 10-134 GPa and 3000-5000 K. Table S2-S3 show the detailed data of two-phase coexistence simulations. Table S4 shows the detailed data of gibbs free energy change and  partition coefficient Table S5 shows the raw data of thermodynamic integration calculations. Table S6 shows the compilation of dataset from ab initio simulations and previous experiments.
DOI: 10.34740/kaggle/ds/1752805
title: Economic Effects Of Covid-19 Lockdown On Tourism
DOI: 10.4121/f2aa4e23-3779-4b80-9fb5-c97a82f73633.v1
title: Analysis output from: Potential of boreholes combined with deep-rooted cover crops to ameliorate subsoil compaction

description: Due to climate change longer periods of drought and high precipitation in short periods of time will become more common. Subsoil compaction causes cropland to be less resilient to such changes due to worse root growth, water infiltration and less capillary rise of water. There is a lack of measures to ameliorate subsoil compaction. Two experiments were performed where the potential of different types of boreholes were compared to deep subsoiling and an untreated reference. Effects on soil structure and crop productivity were analyzed. Data and scripts are not provided, only HTML output files.
DOI: 10.25403/upresearchdata.25061699
title: Framework to determine the staffing needs of dietitians at central and tertiary public hospitals

description: This PhD study was aimed at developing a staffing norm framework for dietitians based at South Africa`s central and tertiary public hospitals. All data for the study was collected through online surveys via the UP Qualtrics platform. The study was based on the WHO Workload Indicators of Staffing Need (WISN) and as a result this methodology led to the development of a framework specifically for the central and tertiary hospital setting. Data emanating from a Delphi consensus exercise with head dietitians at central and tertiary hospitals provided a standardised set of workload components and activity standards covering health, support, and individual activities of dietitians. A case study conducted at 21 central and tertiary public hospitals using this standard set of workload components and activity standards provided much needed data on the workloads and work pressures of dietitians.
DOI: 10.25403/upresearchdata.25061699.v1
title: Framework to determine the staffing needs of dietitians at central and tertiary public hospitals

description: This PhD study was aimed at developing a staffing norm framework for dietitians based at South Africa`s central and tertiary public hospitals. All data for the study was collected through online surveys via the UP Qualtrics platform. The study was based on the WHO Workload Indicators of Staffing Need (WISN) and as a result this methodology led to the development of a framework specifically for the central and tertiary hospital setting. Data emanating from a Delphi consensus exercise with head dietitians at central and tertiary hospitals provided a standardised set of workload components and activity standards covering health, support, and individual activities of dietitians. A case study conducted at 21 central and tertiary public hospitals using this standard set of workload components and activity standards provided much needed data on the workloads and work pressures of dietitians.
DOI: 10.5281/zenodo.10605541
title: List of Abstracts published in the Ekistics Journal 1954–1972 sorted and categorized
DOI: 10.5281/zenodo.10605542
title: List of Abstracts published in the Ekistics Journal 1954–1972 sorted and categorized
DOI: 10.6084/m9.figshare.25126097
title: <b>L</b><b>iquid-like </b><b>clusters </b><b>in glass</b><b>y solids</b><b> as a unique state </b><b>of </b><b>matter</b><b>: dissipative</b><b> but non-</b><b>diffusive</b>

description: A Ni65Nb35 model with a cooling rate of 100 k/ns, the MD-DMS with atomic stress. The temperature is T = 300K, and the periodic of MD-DMS is tw = 100ps. In case you need more information please get in touch with me via email [ haibinyu at hust.edu.cn]
DOI: 10.6084/m9.figshare.24541147.v2
title: <b>Chloroplast genome evolution of </b><b><i>Berberis </i></b><b>(Berberidaceae): implications for phylogeny and metabarcoding</b>

description: <i>Berberis</i> species play a crucial role in the formulation of Chinese patent medicine, Berberidis Radix, employed to address a range of ailments. These species have similar morphology, but different chemicals, potentially leading to misidentifications that can impact the medicine's efficacy. Therefore, it is imperative to develop suitable molecular markers to identify medicinal species. Furthermore, discrepancies exist in the taxonomy of the <i>Berberis</i> genus. In the current study, we <i>de novo</i> assembled the chloroplast genome of those six <i>Berberis</i> species (<i>B. </i><i>julianae</i>, <i>B. tsienii</i>, <i>B. pruinose</i>, <i>B. thunbergii</i>, <i>B. poiretii</i>, and <i>B. wilsoniae</i>) that commonly constitute Berberidis Radix, and compared them with other reported genomes. Our comparative analysis revealed similarities in genome structure, relative synonymous codon usage, amino acid frequency, repeats, and substitutions. Inverted repeats expansion and contraction affected the rate of mutations and found link to the phylogenetic classification of <i>Berberis</i>. We identified the <i>ndhD-ccsA</i> region as the most polymorphic region and applied it to the metabarcoding of Berberidis Radix medicine. The metabarcoding provided insight into their biological composition and confirmed six <i>Berberis </i>species commonly constitute Berberidis Radix. However, we also identified other <i>Berberis </i>species with lower read abundance. Our phylogenetic analysis supports the division of <i>Berberis</i> into four genera, which corroborates previous studies involving extensive sampling. In conclusion, this study offers comprehensive insights into the molecular evolution of the chloroplast genome and the phylogeny of the <i>Berberis</i> genus. Concurrently, through metabarcoding, we confirm the biological origin of Berberidis Radix, thus shedding light on its composition.
DOI: 10.15161/oar.it/76889
title: Carta Geologica d'Italia alla scala 1:50.000, F. 601 Messina-Reggio di Calabria

description: Foglio geologico alla scala 1:50.000 basato su rilevamenti alla scala 1:10.000 (eseguiti tra il 2000 e il 2007) comprensivo di legenda, schemi a cornice, sezioni geologiche e parte sommersa.
DOI: 10.15161/oar.it/76888
title: Carta Geologica d'Italia alla scala 1:50.000, F. 601 Messina-Reggio di Calabria

description: Foglio geologico alla scala 1:50.000 basato su rilevamenti alla scala 1:10.000 (eseguiti tra il 2000 e il 2007) comprensivo di legenda, schemi a cornice, sezioni geologiche e parte sommersa.
DOI: 10.25403/upresearchdata.25108133
title: Experimental methods and characterization of metalated Py-POPs enriched with Fe<sub>3</sub>O<sub>4</sub> nanoparticles and the electrochemical detection of 2-phenylphenol in water using cyclic voltammograms.

description: This work aims to synthesize and characterize FePy-POP, ZnPy-POP, Fe<sub>3</sub>O<sub>4</sub>@ZnPyPOP, and Fe<sub>3</sub>O<sub>4</sub>@FePy-POP. The compounds were characterized using various methods. X-ray diffraction (XRD) analysis was conducted using a Bruker D2 PHASER-e diffractometer using Cu-Kα radiation (0.15418 nm). Scanning electron microscopy (SEM) and Energy-dispersive X-ray spectroscopy (EDX) were carried out on a crossbeam 540 FEG SEM microscope from Zeiss. Transmission electron microscopy (TEM) images were observed using a JOEL JEM 2100F. UV-Vis absorption measurements were taken on a CARY 100 BIO UV-Vis spectrophotometer. FTIR spectroscopy was carried out using Brunker Alpha Fourier transform spectroscopy with platinum attenuated total reflectance (ATR) sampling accessory. These compounds were used as catalysts on a modified glassy carbon electrode (GCE) to enhance electrochemical detection of 2- phenylphenol in water and real samples. An Autolab potentiostat was used to carry out the electrochemical experiments. A three-electrode setup was employed to collect cyclic voltammetry data. The working electrode was a glassy carbon electrode and was polished with a slurry of alumina on a Buehler felt pad and rinsed with millipore water. The counter electrode was a platinum wire, while the reference electrode was a Ag/AgCl wire.
DOI: 10.25403/upresearchdata.25108133.v1
title: Experimental methods and characterization of metalated Py-POPs enriched with Fe<sub>3</sub>O<sub>4</sub> nanoparticles and the electrochemical detection of 2-phenylphenol in water using cyclic voltammograms.

description: This work aims to synthesize and characterize FePy-POP, ZnPy-POP, Fe<sub>3</sub>O<sub>4</sub>@ZnPyPOP, and Fe<sub>3</sub>O<sub>4</sub>@FePy-POP. The compounds were characterized using various methods. X-ray diffraction (XRD) analysis was conducted using a Bruker D2 PHASER-e diffractometer using Cu-Kα radiation (0.15418 nm). Scanning electron microscopy (SEM) and Energy-dispersive X-ray spectroscopy (EDX) were carried out on a crossbeam 540 FEG SEM microscope from Zeiss. Transmission electron microscopy (TEM) images were observed using a JOEL JEM 2100F. UV-Vis absorption measurements were taken on a CARY 100 BIO UV-Vis spectrophotometer. FTIR spectroscopy was carried out using Brunker Alpha Fourier transform spectroscopy with platinum attenuated total reflectance (ATR) sampling accessory. These compounds were used as catalysts on a modified glassy carbon electrode (GCE) to enhance electrochemical detection of 2- phenylphenol in water and real samples. An Autolab potentiostat was used to carry out the electrochemical experiments. A three-electrode setup was employed to collect cyclic voltammetry data. The working electrode was a glassy carbon electrode and was polished with a slurry of alumina on a Buehler felt pad and rinsed with millipore water. The counter electrode was a platinum wire, while the reference electrode was a Ag/AgCl wire.
DOI: 10.60893/figshare.jap.24964386
title: Supplement Material

description: Supplementary material included all the raw data of our manuscript.
DOI: 10.60893/figshare.jap.24964386.v1
title: Supplement Material

description: Supplementary material included all the raw data of our manuscript.
DOI: 10.5255/ukda-sn-856801
title: Technology Enhanced Stakeholder Collaboration for Supporting Risk-Sensitive Urban Development, 2019-2023

description: The dataset comprises interview transcripts, interview guidelines, questionnaire survey templates, qualitative data coding structures, and published papers from three main studies of the project. The research was conducted by three researchers: (1) Investigating stakeholder collaboration for risk-sensitive urban planning using survey and case study strategies, (2) Exploring community engagement for risk-sensitive urban planning through a grounded theory study, and (3) Community resilience in risk-sensitive urban planning. Data for the stakeholder collaboration study were collected using questionnaire surveys and interviews with practitioners involved in disaster risk reduction and urban planning in Sri Lanka. The analysis utilized interpretive structural modeling and system dynamics. For the community engagement study, data were collected through key informant interviews with practitioners involved in disaster risk reduction, climate change adaptation, and urban planning, as well as focus group discussions with community participants in Sri Lanka. The analysis involved grounded theory-based qualitative data coding (open coding, focused coding, and theoretical coding), Total Interpretive Structural Modeling, stakeholder analysis, and social network analysis. The community resilience study data were collected using interviews in Pakistan, and the analysis was conducted through qualitative data coding and the Q-Sort method.
DOI: 10.6084/m9.figshare.22732441
title: Rare <i>TCF3</i> variants associated with pediatric B cell acute lymphoblastic leukemia

description: Germline genetic variants influence development of pediatric B cell acute lymphoblastic leukemia (B-ALL). Genome-wide association studies (GWAS) have identified several pediatric B-ALL susceptibility loci. <i>IKZF1</i> and <i>PAX5</i>, transcription factors involved in B cell development, have been reported as susceptibility genes for B-ALL development. Therefore, we hypothesized that rare variants of genes involved in B cell development would be candidate susceptibility loci for pediatric B-ALL. Thus, we sequenced <i>TCF3</i>, a key transcription factor gene involving in B cell development. Saliva DNA from 527 pediatric patients with pediatric B-ALL in remission who were registered with the Tokyo Children’s Cancer Study Group (TCCSG) were examined. As a <i>TCF3</i> gene-based evaluation, the numbers of rare deleterious germline <i>TCF3</i> sequence variants in patients with pediatric B-ALL were compared with those in cancer-free individuals using data in public databases. As a <i>TCF3</i> single-variant evaluation, the frequencies of rare deleterious germline <i>TCF3</i> sequence variants in patients with pediatric B-ALL were also compared with those in control data. <i>TCF3</i> gene-based analysis revealed significant associations between rare deleterious variants and pediatric B-ALL development. In addition, <i>TCF3</i> variant-based analysis showed particularly strong association between variant rs372168347 (three in 521 TCCSG and three in the 15780 gnomAD whole genome analysis cohort, <i>p</i> = 0.0006) and pediatric B-ALL development. <i>TCF3</i> variants are known to influence B cell maturation and may increase the risk of preleukemic clone emergence.
DOI: 10.6084/m9.figshare.22732441.v1
title: Rare <i>TCF3</i> variants associated with pediatric B cell acute lymphoblastic leukemia

description: Germline genetic variants influence development of pediatric B cell acute lymphoblastic leukemia (B-ALL). Genome-wide association studies (GWAS) have identified several pediatric B-ALL susceptibility loci. <i>IKZF1</i> and <i>PAX5</i>, transcription factors involved in B cell development, have been reported as susceptibility genes for B-ALL development. Therefore, we hypothesized that rare variants of genes involved in B cell development would be candidate susceptibility loci for pediatric B-ALL. Thus, we sequenced <i>TCF3</i>, a key transcription factor gene involving in B cell development. Saliva DNA from 527 pediatric patients with pediatric B-ALL in remission who were registered with the Tokyo Children’s Cancer Study Group (TCCSG) were examined. As a <i>TCF3</i> gene-based evaluation, the numbers of rare deleterious germline <i>TCF3</i> sequence variants in patients with pediatric B-ALL were compared with those in cancer-free individuals using data in public databases. As a <i>TCF3</i> single-variant evaluation, the frequencies of rare deleterious germline <i>TCF3</i> sequence variants in patients with pediatric B-ALL were also compared with those in control data. <i>TCF3</i> gene-based analysis revealed significant associations between rare deleterious variants and pediatric B-ALL development. In addition, <i>TCF3</i> variant-based analysis showed particularly strong association between variant rs372168347 (three in 521 TCCSG and three in the 15780 gnomAD whole genome analysis cohort, <i>p</i> = 0.0006) and pediatric B-ALL development. <i>TCF3</i> variants are known to influence B cell maturation and may increase the risk of preleukemic clone emergence.
DOI: 10.5255/ukda-sn-856919
title: Improving Difficult Social Interactions by Understanding Fears and Language Use, 2018-2021

description: These data come from a series of surveys that all relate to understanding the difficulties people have in talking to each other. We investigated:
- what concerns/fears people have about talking to strangers and having difficult conversations with acquaintances (e.g., about miscarriage, bereavement, a cancer diagnosis) and close others (e.g., about death and dying)
- how these concerns are similar/different across these contexts (e.g., do people worry about similar things when they consider talking to a stranger vs. talking to an acquaintance about bereavement)
DOI: 10.14473/csda/msgedn/wmggsq
title: D_V1506.pdf

description: Dotazník
DOI: 10.14473/csda/msgedn/h2ea3m
title: TI_V1506.pdf

description: Technická informace
DOI: 10.14473/csda/msgedn/kw87wk
title: OM_V1506.pdf

description: Ostatní materiály
DOI: 10.14473/csda/msgedn/ujqrxb
title: K_V1506.pdf

description: Karty
DOI: 10.14473/csda/msgedn
title: Naše společnost 2015 - červen

description: Výzkum provedl výzkumný tým CVVM Sociologického ústavu AV ČR, v.v.i., v rámci výzkumu „Naše společnost 2015". Sběr dat provedla tazatelská síť CVVM.
DOI: 10.14473/csda/msgedn/lw2nuy
title: NS_1506_DataFile-FINAL_bez jmen.tab

description: Data