cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11860866
title: Two Cu(II)-based coordination polymers constructed from the pyridyl-carboxylate ligands: structural diversity and treatment activity on neonatal sepsis by reducing the over inflammatory response

description: In the current study, two Cu(II)-based coordination polymers with the molecular formula of {[Cu<sub>3</sub>(μ<sub>3</sub>-cpia)<sub>2</sub>(phen)<sub>3</sub>]·10H<sub>2</sub>O}<sub>n</sub> (<b>1</b>, H<sub>3</sub>cpia = 4-(6-carboxy-pyridin-3-yl)-isophthalic acid, phen = 1,10-phenanthroline) and {[Cu<sub>4</sub>(μ<sub>4</sub>-cpia)<sub>2</sub>(μ-OH)<sub>2</sub>(μ-4,4′-bipy)<sub>2</sub>]·4,4′-bipy·2H<sub>2</sub>O}<sub>n</sub> (<b>2</b>, 4,4′-bipy = 4,4′-bipyridine) have been successfully prepared by reaction of Cu(NO<sub>3</sub>)<sub>2</sub>·3H<sub>2</sub>O with the H<sub>3</sub>cpia in the presence of different N-donor ligands (phen for <b>1</b> and 4,4′-bipy for <b>2</b>). Furthermore, to evaluate the protective effect of compounds <b>1</b> and <b>2</b> against neonatal sepsis, the following experiments were conducted. First, the content of the C-reactive protein in the serum of the newborns after compound <b>1</b> or <b>2</b> treatment was measured with the enzyme-linked immunosorbent assay detection kit at indicated time. Next, the inflammatory level during neonatal sepsis was detected by measuring the relative expression level of the <i>nf-κb</i> and <i>tnf-α</i> with real time RT-PCR.
DOI: 10.6084/m9.figshare.11860872
title: Data Code from A grain boundary model considering the grain misorientation within a geometrically nonlinear gradient-extended crystal viscoplasticity theory

description: The main goal of the current work is to present a grain boundary model based on the mismatch between adjacent grains in a geometrically nonlinear crystal viscoplasticity framework including the effect of the dislocation density tensor. To this end, the geometrically nonlinear crystal viscoplasticity theory by Alipour et al. (Alipour A <i>et al</i>. 2019 <i>Int. J. Plast.</i> <b>118</b>, 17–35. (doi:10.1016/j.ijplas.2019.01.009)) is extended by a more complex free energy and a geometrical transmissibility parameter is used to evaluate the dislocation transmission at the grain boundaries which includes the orientations of slip directions and slip plane normals. Then, the grain boundary strength is evaluated based on the misorientation between neighbouring grains using the transmissibility parameter. In some examples, the effect of mismatch in adjacent grains on the grain boundary strength, the dislocation transmission at the grain boundaries and the Hall–Petch slope is discussed by a comparison of two-dimensional random-oriented polycrystals and textured polycrystals under shear deformation.
DOI: 10.6084/m9.figshare.11860866.v1
title: Two Cu(II)-based coordination polymers constructed from the pyridyl-carboxylate ligands: structural diversity and treatment activity on neonatal sepsis by reducing the over inflammatory response

description: In the current study, two Cu(II)-based coordination polymers with the molecular formula of {[Cu<sub>3</sub>(μ<sub>3</sub>-cpia)<sub>2</sub>(phen)<sub>3</sub>]·10H<sub>2</sub>O}<sub>n</sub> (<b>1</b>, H<sub>3</sub>cpia = 4-(6-carboxy-pyridin-3-yl)-isophthalic acid, phen = 1,10-phenanthroline) and {[Cu<sub>4</sub>(μ<sub>4</sub>-cpia)<sub>2</sub>(μ-OH)<sub>2</sub>(μ-4,4′-bipy)<sub>2</sub>]·4,4′-bipy·2H<sub>2</sub>O}<sub>n</sub> (<b>2</b>, 4,4′-bipy = 4,4′-bipyridine) have been successfully prepared by reaction of Cu(NO<sub>3</sub>)<sub>2</sub>·3H<sub>2</sub>O with the H<sub>3</sub>cpia in the presence of different N-donor ligands (phen for <b>1</b> and 4,4′-bipy for <b>2</b>). Furthermore, to evaluate the protective effect of compounds <b>1</b> and <b>2</b> against neonatal sepsis, the following experiments were conducted. First, the content of the C-reactive protein in the serum of the newborns after compound <b>1</b> or <b>2</b> treatment was measured with the enzyme-linked immunosorbent assay detection kit at indicated time. Next, the inflammatory level during neonatal sepsis was detected by measuring the relative expression level of the <i>nf-κb</i> and <i>tnf-α</i> with real time RT-PCR.
DOI: 10.6084/m9.figshare.11860872.v2
title: Data Code from A grain boundary model considering the grain misorientation within a geometrically nonlinear gradient-extended crystal viscoplasticity theory

description: The main goal of the current work is to present a grain boundary model based on the mismatch between adjacent grains in a geometrically nonlinear crystal viscoplasticity framework including the effect of the dislocation density tensor. To this end, the geometrically nonlinear crystal viscoplasticity theory by Alipour et al. (Alipour A <i>et al</i>. 2019 <i>Int. J. Plast.</i> <b>118</b>, 17–35. (doi:10.1016/j.ijplas.2019.01.009)) is extended by a more complex free energy and a geometrical transmissibility parameter is used to evaluate the dislocation transmission at the grain boundaries which includes the orientations of slip directions and slip plane normals. Then, the grain boundary strength is evaluated based on the misorientation between neighbouring grains using the transmissibility parameter. In some examples, the effect of mismatch in adjacent grains on the grain boundary strength, the dislocation transmission at the grain boundaries and the Hall–Petch slope is discussed by a comparison of two-dimensional random-oriented polycrystals and textured polycrystals under shear deformation.
DOI: 10.21942/uva.11860863
title: Mother-Specific Signature in the Maternal Transcriptome Composition of Mature,Unfertilized Zebrafish Eggs

description: Maternal mRNA present in mature oocytes plays an important role in the proper development of the early embryo. As the composition of the maternal transcriptome in general has been studied with pooled mature eggs, potential differences between individual eggs are unknown. Here we present a transcriptome study on individual zebrafish eggs from clutches of five mothers in which we focus on the differences in maternal mRNA abundance per gene between and within clutches. To minimize technical interference, we used mature, unfertilized eggs from siblings. About half of the number of analyzed genes was found to be expressed as maternal RNA. The expressed and nonexpressed genes showed that maternal mRNA accumulation is a non-random process, as it is related to specific biological pathways and processes relevant in early embryogenesis. Moreover, it turned out that overall the composition of the maternal transcriptome is tightly regulated as about half of the expressed genes display a less than twofold expression range between the observed minimum and maximum expression values of a gene in the experiment. Even more, the maximum gene-expression difference within clutches is for 88% of the expressed genes lower than twofold. This means that expression differences observed in maternally expressed genes are primarily caused by differences between mothers, with only limited variability between eggs from the same mother. This was underlined by the fact that 99% of the expressed genes were found to be differentially expressed between any of the mothers in an ANOVA test. Furthermore, linking chromosome location, transcription factor binding sites, and miRNA target sites of the genes in clusters of distinct and unique mother-specific gene-expression, suggest biological relevance of the mother-specific signatures in the maternal transcriptome composition. Altogether, the maternal transcriptome composition of mature zebrafish oocytes seems to be tightly regulated with a distinct mother-specific signature. GSE72839at http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?accGSE72839, and http://rnabiology.nl/Dr-Browser.html 2 papers: Mother-Specific Signature in the Maternal Transcriptome Composition of Mature, Unfertilized Zebrafish Eggs. Rauwerda H, Wackers P, Pagano JF, de Jong M, Ensink W, Dekker R, Nehrdich U, Spaink HP, Jonker M, Breit TM. PLoS One. 2016 Jan 22;11(1):e0147151. doi: 10.1371/journal.pone.0147151. eCollection 2016. PMID: 26799215 Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers. Pagano JF, Rauwerda H, de Leeuw WC, Wackers P, de Jong M, Ensink W, Dekker R, Nehrdich U, Spaink HP, Jonker M, Breit TM.Data Brief. 2016 Apr 26;8:69-72. doi: 10.1016/j.dib.2016.04.045. eCollection 2016 Sep. PMID: 27284564All Data are in SILS tape archive 2016_Breit_mother.spec.mat.transcr.zfeggs_Rauwerda_Breit
DOI: 10.21942/uva.11860863.v1
title: Mother-Specific Signature in the Maternal Transcriptome Composition of Mature,Unfertilized Zebrafish Eggs

description: Maternal mRNA present in mature oocytes plays an important role in the proper development of the early embryo. As the composition of the maternal transcriptome in general has been studied with pooled mature eggs, potential differences between individual eggs are unknown. Here we present a transcriptome study on individual zebrafish eggs from clutches of five mothers in which we focus on the differences in maternal mRNA abundance per gene between and within clutches. To minimize technical interference, we used mature, unfertilized eggs from siblings. About half of the number of analyzed genes was found to be expressed as maternal RNA. The expressed and nonexpressed genes showed that maternal mRNA accumulation is a non-random process, as it is related to specific biological pathways and processes relevant in early embryogenesis. Moreover, it turned out that overall the composition of the maternal transcriptome is tightly regulated as about half of the expressed genes display a less than twofold expression range between the observed minimum and maximum expression values of a gene in the experiment. Even more, the maximum gene-expression difference within clutches is for 88% of the expressed genes lower than twofold. This means that expression differences observed in maternally expressed genes are primarily caused by differences between mothers, with only limited variability between eggs from the same mother. This was underlined by the fact that 99% of the expressed genes were found to be differentially expressed between any of the mothers in an ANOVA test. Furthermore, linking chromosome location, transcription factor binding sites, and miRNA target sites of the genes in clusters of distinct and unique mother-specific gene-expression, suggest biological relevance of the mother-specific signatures in the maternal transcriptome composition. Altogether, the maternal transcriptome composition of mature zebrafish oocytes seems to be tightly regulated with a distinct mother-specific signature. GSE72839at http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?accGSE72839, and http://rnabiology.nl/Dr-Browser.html 2 papers: Mother-Specific Signature in the Maternal Transcriptome Composition of Mature, Unfertilized Zebrafish Eggs. Rauwerda H, Wackers P, Pagano JF, de Jong M, Ensink W, Dekker R, Nehrdich U, Spaink HP, Jonker M, Breit TM. PLoS One. 2016 Jan 22;11(1):e0147151. doi: 10.1371/journal.pone.0147151. eCollection 2016. PMID: 26799215 Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers. Pagano JF, Rauwerda H, de Leeuw WC, Wackers P, de Jong M, Ensink W, Dekker R, Nehrdich U, Spaink HP, Jonker M, Breit TM.Data Brief. 2016 Apr 26;8:69-72. doi: 10.1016/j.dib.2016.04.045. eCollection 2016 Sep. PMID: 27284564All Data are in SILS tape archive 2016_Breit_mother.spec.mat.transcr.zfeggs_Rauwerda_Breit
DOI: 10.6084/m9.figshare.11860872.v1
title: Data Code from A grain boundary model considering the grain misorientation within a geometrically nonlinear gradient-extended crystal viscoplasticity theory

description: The main goal of the current work is to present a grain boundary model based on the mismatch between adjacent grains in a geometrically nonlinear crystal viscoplasticity framework including the effect of the dislocation density tensor. To this end, the geometrically nonlinear crystal viscoplasticity theory by (Alipour A <i>et al</i>. 2019 <i>Int. J. Plast.</i> <b>118</b>, 17–35. (doi:10.1016/j.ijplas.2019.01.009)) is extended by a more complex free energy and a geometrical transmissibility parameter is used to evaluate the dislocation transmission at the grain boundaries which includes the orientations of slip directions and slip plane normals. Then, the grain boundary strength is evaluated based on the misorientation between neighbouring grains using the transmissibility parameter. In some examples, the effect of mismatch in adjacent grains on the grain boundary strength, the dislocation transmission at the grain boundaries and the Hall–Petch slope is discussed by a comparison of two-dimensional random-oriented polycrystals and textured polycrystals under shear deformation.
DOI: 10.26180/5e4f56f6b774e
title: MINBAR burst oscillation analysis table

description: For 950 bursts included in the MINBAR sample, and observed with the <i>RXTE</i>/PCA from sources with previously detected burst oscillations, we list an analysis of the high-time resolution data, providing information on the detectability and amplitude of the oscillations, as well as where in the burst they are found. See the paper for more details. The data file follows the AAS standard for machine-readable tables described at https://journals.aas.org/data-guide/#machine_readable_tables
DOI: 10.26180/5e4f55da291cb
title: MINBAR source table

description: A complete list of thermonuclear burst sources assembled by cross-matching the <i>INTEGRAL</i> source catalog (Bird et al. 2010) with the burst sources (source type code “B’) in the catalog of LMXBs of (Liu et al. 2007). To ensure completeness, we cross-matched our original list with a separate catalog, assembled following a systematic search through the lit- erature and incorporating new discoveries since the mid 1990s, available at http://www.sron.nl/∼jeanz/bursterlist.html. The resulting sample includes 115 known LMXBs which have exhibited type-I (thermonuclear) bursts. See also Table 1 of the paper.The table is provided as a Flexible Image Transport System (FITS) file following the standard, available at https://fits.gsfc.nasa.gov/fits_standard.html
DOI: 10.26180/5e4f541ece460
title: MINBAR observations table

description: This file contains analysis results for every RXTE/PCA, BeppoSAX/WFC and INTEGRAL/JEM-X observation from the 85 sources contributing to data release 1, from which the events listed in the burst table (also available in this collection) were drawn. See the paper for complete details. The data file follows the AAS standard for machine-readable tables described at https://journals.aas.org/data-guide/#machine_readable_tables
DOI: 10.6084/m9.figshare.11860776
title: Toward an understanding of the systematics and evolution of the genus <i>Acrapex</i> Hampson, 1894 (Lepidoptera: Noctuidae: Apameini: Sesamiina): molecular phylogenetics of the genus and review of the species-rich <i>Acrapex aenigma</i> group

description: With a species count reaching almost 100 species, the genus <i>Acrapex</i> is the most diverse genus of sesamiine stemborers (Lepidoptera: Noctuidae: Noctuinae: Apameini: Sesamiina). <i>Acrapex</i> species are mostly distributed in the Afrotropics and consist of several large clades corresponding to distinct species complexes. In this study, 45 morphologically similar species of <i>Acrapex</i> from sub-Saharan Africa are reviewed, including 22 new species that are described: <i>Acrapex alemura</i> <b>n. sp</b>., <i>A. barnsi</i> <b>n. sp</b>., <i>A. capelongo</i> <b>n. sp</b>., <i>A. congoensis</i> <b>n. sp</b>., <i>A. elgona</i> <b>n. sp</b>., <i>A. elisabethiana</i> <b>n. sp</b>., <i>A. eucantha</i> <b>n. sp</b>., <i>A. grandis</i> <b>n. sp</b>., <i>A. igominyi</i> <b>n. sp</b>., <i>A. inexpectata</i> <b>n. sp</b>., <i>A. ketoma</i> <b>n. sp</b>., <i>A. lilomwi</i> <b>n. sp</b>., <i>A. mafinga</i> <b>n. sp</b>., <i>A. makete</i> <b>n. sp</b>., <i>A. marungu</i> <b>n. sp</b>., <i>A. mazoe</i> <b>n. sp</b>., <i>A. mlanje</i> <b>n. sp</b>., <i>Acrapex muchinga</i> <b>n. sp</b>., <i>A. ngorongoro</i> <b>n. sp</b>., <i>A. obscura</i> <b>n. sp</b>., <i>A. ruiru</i> <b>n. sp</b>. and <i>A. wittei</i> <b>n. sp</b>. Supplemental descriptions for previously described species are provided as well. These 45 species are assigned to the newly defined <i>Acrapex aenigma</i> species group. We also conduct molecular phylogenetic analyses and molecular species delimitation analyses on a multi-marker (four mitochondrial and two nuclear genes) molecular dataset encompassing 304 specimens (including 256 <i>Acrapex</i> specimens from 54 species of which 16 species belong to the <i>A. aenigma</i> group). Molecular phylogenetics analyses recover well-supported relationships within <i>Acrapex</i> and support the monophyly of the newly defined group. Results of molecular species delimitation analyses are mostly congruent and tend to corroborate the status of the sampled <i>Acrapex</i> species. Consistent with what has been previously found in other studies, the comparison of results from distinct methods and settings for molecular species delimitation analyses allows us to assess species boundaries with more confidence.
DOI: 10.6084/m9.figshare.11860650
title: Molecular Mechanism Underlying the Effect of Illumination Time on the Growth Performance of Broilers via Changes in the Intestinal Bacterial Community

description: Raw data
DOI: 10.6084/m9.figshare.11860650.v1
title: Molecular Mechanism Underlying the Effect of Illumination Time on the Growth Performance of Broilers via Changes in the Intestinal Bacterial Community

description: Raw data
DOI: 10.6084/m9.figshare.11860611
title: Modeling of chromatographic retention of the selected antiarrhythmics and structurally related compounds in the hydrophilic interactions under the TLC and HPLC conditions

description: High-performance liquid chromatography (HPLC) plays an important role in testing the pharmaceutically active compounds. In despite of the advantages of HPLC, thin-layer chromatography (TLC) retains its applicability to the different experimental tasks. The experimental conditions which allow hydrophilic interactions in the chromatographic system were tested in the HPLC and TLC systems for ivabradine, its related compounds, diltiazem and verapamil. Under the TLC conditions, retention behavior of the investigated compounds was tested on silica gel modified with cyanopropyl ligands as stationary phase and acetonitrile + methanol containing 25% <i>v</i>/<i>v</i> formic acid. Under the HPLC conditions, we used silica gel modified with cyanopropyl ligands as a column packing and the acetonitrile + 0.25% aqueous solution of formic acid as mobile phase. Retention behavior of the investigated analytes depending on the changing volume fractions of the mobile phase modifier was characterized both for TLC and HPLC data sets by the Soczewiński–Wachtmeister equation. Linear relationships were established between the retention coefficients characterizing the retention mechanism (<i>R</i><sub>M</sub><sup>0</sup>/<i>m</i>, log<i>k</i><sub>0</sub>/<i>m</i>) and molecular properties of the investigated compounds. The Quantitative Structure Retention Relationship (QSRR) modeling was performed with the use of the stepwise multiple linear regression, in order to select molecular properties which influence retention.
DOI: 10.6084/m9.figshare.11860611.v1
title: Modeling of chromatographic retention of the selected antiarrhythmics and structurally related compounds in the hydrophilic interactions under the TLC and HPLC conditions

description: High-performance liquid chromatography (HPLC) plays an important role in testing the pharmaceutically active compounds. In despite of the advantages of HPLC, thin-layer chromatography (TLC) retains its applicability to the different experimental tasks. The experimental conditions which allow hydrophilic interactions in the chromatographic system were tested in the HPLC and TLC systems for ivabradine, its related compounds, diltiazem and verapamil. Under the TLC conditions, retention behavior of the investigated compounds was tested on silica gel modified with cyanopropyl ligands as stationary phase and acetonitrile + methanol containing 25% <i>v</i>/<i>v</i> formic acid. Under the HPLC conditions, we used silica gel modified with cyanopropyl ligands as a column packing and the acetonitrile + 0.25% aqueous solution of formic acid as mobile phase. Retention behavior of the investigated analytes depending on the changing volume fractions of the mobile phase modifier was characterized both for TLC and HPLC data sets by the Soczewiński–Wachtmeister equation. Linear relationships were established between the retention coefficients characterizing the retention mechanism (<i>R</i><sub>M</sub><sup>0</sup>/<i>m</i>, log<i>k</i><sub>0</sub>/<i>m</i>) and molecular properties of the investigated compounds. The Quantitative Structure Retention Relationship (QSRR) modeling was performed with the use of the stepwise multiple linear regression, in order to select molecular properties which influence retention.
DOI: 10.6084/m9.figshare.11860602
title: Garlic

description: Allium sativum gene cds sequencing、pep sequencing and gff .
DOI: 10.6084/m9.figshare.11860596.v1
title: Data_214.sav

description: Data were collected from 25 September 2017 to 19 October 2017 at a private university in Chennai, Tamil Nadu, India.
DOI: 10.6084/m9.figshare.11860596.v2
title: Data_214_2017.sav

description: Data were collected from 25 September 2017 to 19 October 2017 at a private university in Chennai, Tamil Nadu, India.
DOI: 10.6084/m9.figshare.11860596.v3
title: Data_214_2017.sav

description: Data were collected from 25 September 2017 to 19 October 2017 at a private university in Chennai, Tamil Nadu, India.
DOI: 10.6084/m9.figshare.11860596.v4
title: Data_214_2017.sav

description: Data were collected from 25 September 2017 to 19 October 2017 at a private university in Chennai, Tamil Nadu, India.
DOI: 10.6084/m9.figshare.11860596.v5
title: Data_214_2017.sav

description: Data were collected from 25 September 2017 to 19 October 2017 at a private university in Chennai, Tamil Nadu, India.
DOI: 10.6084/m9.figshare.11860596.v6
title: Syed_SRC_Data_214_2017.sav

description: Data were collected from 25 September 2017 to 19 October 2017 at a private university in Chennai, Tamil Nadu, India.
DOI: 10.6084/m9.figshare.11860596.v7
title: SRC_Data_214_2017.sav

description: Data were collected from 25 September 2017 to 19 October 2017 at a private university in Chennai, Tamil Nadu, India.
DOI: 10.6084/m9.figshare.11860431
title: Gingival Crevicular Fluid Proteome for Root Resorption Early Marker

description: Raw data from Orbitrap LC-MS/MS analysis, analysis data from statistical test and <i>in-silico</i> analysis.
DOI: 10.6084/m9.figshare.11860596.v8
title: SRC_Data_214_2017.sav

description: Data were collected from 25 September 2017 to 19 October 2017 at a private university in Chennai, Tamil Nadu, India.
DOI: 10.6084/m9.figshare.11860596.v9
title: SRC_Data_214_2017.sav

description: Data were collected from 25 September 2017 to 19 October 2017 at a private university in Chennai, Tamil Nadu, India.
DOI: 10.6084/m9.figshare.11860596.v10
title: Univ Data (214)_20.10.17.sav

description: Data were collected from 25 September 2017 to 19 October 2017 at a private university in Chennai, Tamil Nadu, India.