cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20651802.v1
title: cif file 2 from Synthesis and structure of metal-TCPE (metal = Th, Ce) metal-organic frameworks based on 1,2,4,5-tetrakis(4-carboxyphenyl) ethylene

description: Two new metal-organic frameworks (MOFs) (Th/ Ce -TCPE) based on 1,2,4,5-tetrakis(4-carboxyphenyl)ethylene were obtained using a straightforward reaction under moderate conditions. Th and Ce formed the central units of this MOF in the mononuclear and in the unusual trinuclear cluster configurations, respectively. The resulting MOFs were analysed by fluorescence spectroscopy to understand their luminescence. The obtained data revealed that benzene's electron cloud density and torsion angle on the ligand were affected by the acetic acid molecule and Th(IV), which caused Th-TCPE to irradiate stronger blue emission, but Ce-TCPE showed no fluorescence due to the self-quenching. Such a unique luminescence property could be used for fluorescence or radiopharmaceutical sensing.
DOI: 10.6084/m9.figshare.21176075
title: Additional file 1 of Research on copper production of the Bohai Kingdom in Northeast China

description: Additional file 1. The p-XRF DATA of the copper and bronze artefacts of Bohai Kingdom.
DOI: 10.6084/m9.figshare.23797412
title: Additional file 5 of Peptide aptamer-based time-resolved fluoroimmunoassay for CHIKV diagnosis

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.23797412.v1
title: Additional file 5 of Peptide aptamer-based time-resolved fluoroimmunoassay for CHIKV diagnosis

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.23797415
title: Additional file 6 of Peptide aptamer-based time-resolved fluoroimmunoassay for CHIKV diagnosis

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.19589082.v1
title: Additional file 5 of Whole blood transcriptome profiling identifies candidate genes associated with alopecia in male giant pandas (Ailuropoda melanoleuca)

description: Additional file 5: Table S5.
DOI: 10.6084/m9.figshare.19604245
title: GHM code&data

description: This is the data and code related to the publication- 
<em>A generalized heterogeneity model for spatial interpolation.</em>
<br>
The order in which the entire model performs spatial interpolation has been labeled by serial number in the code folder.
<br>
Author: Peng Luo (Technical University of Munich)
peng.luo@tum.de
DOI: 10.6084/m9.figshare.21176075.v1
title: Additional file 1 of Research on copper production of the Bohai Kingdom in Northeast China

description: Additional file 1. The p-XRF DATA of the copper and bronze artefacts of Bohai Kingdom.
DOI: 10.25387/g3.14885733
title: Supplemental Material for Mendieta et al., 2021

description: Attached are the supplemental tables and annotations in GFF3 format mentioned in the entitled manuscript. Files are currently zipped. <br>Supplemental figures mentioned in the manuscript. All supplementary 
figures within the zipped directory are referenced by their number.
DOI: 10.25387/g3.14885733.v2
title: Supplemental Material for Mendieta et al., 2021

description: Attached are the supplemental tables and annotations in GFF3 format mentioned in the entitled manuscript. Files are currently zipped. <br>Supplemental figures mentioned in the manuscript. All supplementary 
figures within the zipped directory are referenced by their number.
DOI: 10.25387/g3.14885733.v1
title: Supplemental Material for Mendieta et al., 2021

description: Attached are the supplemental tables and annotations in GFF3 format mentioned in the entitled manuscript. Files are currently zipped. <br>Supplemental figures mentioned in the manuscript. All supplementary 
figures within the zipped directory are referenced by their number.
DOI: 10.6084/m9.figshare.21176030.v1
title: Additional file 1 of Combining single-cell RNA sequencing of peripheral blood mononuclear cells and exosomal transcriptome to reveal the cellular and genetic profiles in COPD

description: Additional file 1: Table S1. The expression matrix of exosomal RNA sequencing.
DOI: 10.6084/m9.figshare.14361587
title: Canopy and understory nitrogen addition have different effects on fine root dynamics in a temperate forest: implications for soil carbon storage

description: Here,
we conducted a field experiment comparing the effects of canopy addition of N
(CAN) with understory addition of N (UAN) at three N-addition rates (0, 25, and
50 kg N ha<sup>–</sup><sup>1</sup> yr<sup>–</sup><sup>1</sup>)
on fine root dynamics in a temperate deciduous forest.

 
Fine root production and biomass were significantly higher with CAN
than with UAN. At
the same N-addition rate, increases in fine root production with CAN were at
least 2-times greater than with UAN. At the high N-addition rate and
relative to the Control, fine root biomass was significantly increased by 23.5%
by CAN but was significantly decreased by 12.2% by UAN.
DOI: 10.6084/m9.figshare.20651799.v1
title: cif file 1 from Synthesis and structure of metal-TCPE (metal = Th, Ce) metal-organic frameworks based on 1,2,4,5-tetrakis(4-carboxyphenyl) ethylene

description: Two new metal-organic frameworks (MOFs) (Th/ Ce -TCPE) based on 1,2,4,5-tetrakis(4-carboxyphenyl)ethylene were obtained using a straightforward reaction under moderate conditions. Th and Ce formed the central units of this MOF in the mononuclear and in the unusual trinuclear cluster configurations, respectively. The resulting MOFs were analysed by fluorescence spectroscopy to understand their luminescence. The obtained data revealed that benzene's electron cloud density and torsion angle on the ligand were affected by the acetic acid molecule and Th(IV), which caused Th-TCPE to irradiate stronger blue emission, but Ce-TCPE showed no fluorescence due to the self-quenching. Such a unique luminescence property could be used for fluorescence or radiopharmaceutical sensing.
DOI: 10.6084/m9.figshare.14360385
title: Clinical practice and outcome of radiotherapy for advanced esophageal squamous cell carcinoma between 2002 and 2018 in China: the multi-center 3JECROG Survey

description: To determine the survival and prognostic factors of esophageal squamous cell carcinoma (ESCC) patients undergoing radical (chemo)radiotherapy in the era of three-dimensional conformal radiotherapy (3DCRT) and intensity modulated radiotherapy (IMRT) in China. The Jing-Jin-Ji Esophageal and Esophagogastric Cancer Radiotherapy Oncology Group (3JECROG) conducted the first nationwide survey of nine institutions. Detailed information was accumulated on 5185 patients with ESCC who received definitive 3DCRT/IMRT between 2002 and 2018. Relevant prognostic factors were evaluated to assess their influence on overall and progression-free survivals. After a median follow-up time of 47.0 (0.9–157.4) months, the 1-year, 2-year, 3-year and 5-year overall survival rates of the whole group were 69.8%, 46.6%, 37.9% and 30.1%. The 1-year, 2-year, 3-year, and 5-year progression-free survival rates were 54.1%, 36.6%, 30.5% and 24.9%. Multivariate analysis demonstrated that sex, clinical stage, treatment modality and radiation dose were prognostic factors for OS. The survival of patients who received concurrent chemoradiotherapy (CCRT) was better than that of patients who received radiotherapy alone or sequential chemoradiotherapy. Patients receiving adjuvant chemotherapy after CCRT had a better OS than patients receiving CCRT alone. Patients receiving higher radiation dose had a better OS than those patients receiving low-dose radiotherapy. The survival of ESCC patients undergoing radical (chemo)radiotherapy was relatively satisfactory in the era of 3DCRTand IMRT. As the largest-scale multicenter research on esophageal cancer radiotherapy conducted in China, this study establishes national benchmarks and helps to provide references for subsequent related researches.
DOI: 10.6084/m9.figshare.14360385.v1
title: Clinical practice and outcome of radiotherapy for advanced esophageal squamous cell carcinoma between 2002 and 2018 in China: the multi-center 3JECROG Survey

description: To determine the survival and prognostic factors of esophageal squamous cell carcinoma (ESCC) patients undergoing radical (chemo)radiotherapy in the era of three-dimensional conformal radiotherapy (3DCRT) and intensity modulated radiotherapy (IMRT) in China. The Jing-Jin-Ji Esophageal and Esophagogastric Cancer Radiotherapy Oncology Group (3JECROG) conducted the first nationwide survey of nine institutions. Detailed information was accumulated on 5185 patients with ESCC who received definitive 3DCRT/IMRT between 2002 and 2018. Relevant prognostic factors were evaluated to assess their influence on overall and progression-free survivals. After a median follow-up time of 47.0 (0.9–157.4) months, the 1-year, 2-year, 3-year and 5-year overall survival rates of the whole group were 69.8%, 46.6%, 37.9% and 30.1%. The 1-year, 2-year, 3-year, and 5-year progression-free survival rates were 54.1%, 36.6%, 30.5% and 24.9%. Multivariate analysis demonstrated that sex, clinical stage, treatment modality and radiation dose were prognostic factors for OS. The survival of patients who received concurrent chemoradiotherapy (CCRT) was better than that of patients who received radiotherapy alone or sequential chemoradiotherapy. Patients receiving adjuvant chemotherapy after CCRT had a better OS than patients receiving CCRT alone. Patients receiving higher radiation dose had a better OS than those patients receiving low-dose radiotherapy. The survival of ESCC patients undergoing radical (chemo)radiotherapy was relatively satisfactory in the era of 3DCRTand IMRT. As the largest-scale multicenter research on esophageal cancer radiotherapy conducted in China, this study establishes national benchmarks and helps to provide references for subsequent related researches.
DOI: 10.5285/10f309b9-6179-4fe4-e063-6c86abc0a694
title: Ocean Colour Radiometer (OCR) data measured at 7 wavelengths at 30 minute intervals at a height of 4m on the PAP1 mooring at the Porcupine Abyssal Plain -Sustained Observatory (PAP-SO) from 12 May 2023 to 31st August 2023.

description: Radiometer data from OCR: 7 wavelengths (calibrated by Satlantic 11 Apr 2019: 412.5, 443.9, 489.3, 510.8, 554.2,670,  682.4nm), measured using Satlantic OCR-507-ICSA SN 226 at a height ~4m in air at the top of the PAP1 buoy, 30 minutes resolution at the Porcupine Abyssal Plain - Sustained Observatory in the North East Atlantic ocean (49N 16.5W). Deployed on the PAP1 mooring during cruise JC247 as part of the NERC CLASS programme. Data runs from 12 May 2023 to 31st August 2023. This dataset was collected by scientists at the National Oceanography Centre, Southampton, UK.
DOI: 10.6084/m9.figshare.19589262.v1
title: Additional file 2 of VCP suppresses proteopathic seeding in neurons

description: Additional file 2.
DOI: 10.6084/m9.figshare.19589268.v1
title: Additional file 3 of VCP suppresses proteopathic seeding in neurons

description: Additional file 3.
DOI: 10.6084/m9.figshare.19589274
title: Additional file 4 of VCP suppresses proteopathic seeding in neurons

description: Additional file 4.
DOI: 10.6084/m9.figshare.7020509
title: Chia (Salvia hispanica) experiment at a 30˚ N site in Sichuan Basin, China

description: ABSTRACT: The mysterious ancient Mesoamerican Indian crop chia (Salvia hispanica) is revived and expanding worldwide due to its richness of valuable nutraceuticals such as α-linolenic acid (ALA), antioxidants, food fiber, gels, and proteins. We carried out a pilot experiment on chia planting in non-frost Sichuan Basin, at Hechuan Base (30˚0′ 43″ N, 106˚7′ 41″ E, 216 m), Southwest University, Chongqing, China. The split-plot trial contained two factors, 3 spring-summer sowing times as main plots, and 6 densities as subplots, with 3 replicates. Phenological, botanical, adversity, yield, and seed quality traits were investigated. Plants were very tall, suffered from lodging, and flowered in mid-October. Sichuan Basin can be considered as a north edge for growing chia, with low yield (680 kg/hectare) because of insufficient seed filling and maturation in autumn-winter season (1000-seed weight of 1.14 g). However, its ALA content is 5 percent points higher than the seed-donor commercial bottle (65.06%/63.96% VS 59.35%/59.74% for black/white seeds), accompanied by decrease oleic and stearic acid, while linoleic acid and palmitic acid are equivalent. Considering its short-day habit, it is recommended to try sowing in middle summer (from late June to early August) to avoid too long growing period, excessive vegetative growth, and waste of field and climate resources caused by spring-summer sowing. Furthermore, winter sowing of chia with mulch cover could also be tried, with an expectation of harvesting in summer. Most importantly, only when the photoperiod-insensitive early flowering stocks are created, chia can be recommended as a low-risk crop to the farmers of this region.
DOI: 10.6084/m9.figshare.7020509.v1
title: Chia (Salvia hispanica) experiment at a 30˚ N site in Sichuan Basin, China

description: ABSTRACT: The mysterious ancient Mesoamerican Indian crop chia (Salvia hispanica) is revived and expanding worldwide due to its richness of valuable nutraceuticals such as α-linolenic acid (ALA), antioxidants, food fiber, gels, and proteins. We carried out a pilot experiment on chia planting in non-frost Sichuan Basin, at Hechuan Base (30˚0′ 43″ N, 106˚7′ 41″ E, 216 m), Southwest University, Chongqing, China. The split-plot trial contained two factors, 3 spring-summer sowing times as main plots, and 6 densities as subplots, with 3 replicates. Phenological, botanical, adversity, yield, and seed quality traits were investigated. Plants were very tall, suffered from lodging, and flowered in mid-October. Sichuan Basin can be considered as a north edge for growing chia, with low yield (680 kg/hectare) because of insufficient seed filling and maturation in autumn-winter season (1000-seed weight of 1.14 g). However, its ALA content is 5 percent points higher than the seed-donor commercial bottle (65.06%/63.96% VS 59.35%/59.74% for black/white seeds), accompanied by decrease oleic and stearic acid, while linoleic acid and palmitic acid are equivalent. Considering its short-day habit, it is recommended to try sowing in middle summer (from late June to early August) to avoid too long growing period, excessive vegetative growth, and waste of field and climate resources caused by spring-summer sowing. Furthermore, winter sowing of chia with mulch cover could also be tried, with an expectation of harvesting in summer. Most importantly, only when the photoperiod-insensitive early flowering stocks are created, chia can be recommended as a low-risk crop to the farmers of this region.
DOI: 10.6084/m9.figshare.7546025.v1
title: Additional file 2: of Genome-wide association study reveals novel loci associated with body size and carcass yields in Pekin ducks

description: Table S1 GO analysis of the candidate genes. Table S2 Biological pathways of the candidate genes. Table S3 All SNP information. (XLSX 1050 kb)
DOI: 10.5285/10f38334-66af-3216-e063-6c86abc06cbe
title: Dissolved oxygen concentration at 1m on the PAP1 mooring measured with an Aanderraa optode sensor from the Porcupine Abyssal Plain - Sustained Observatory (PAP-SO) (~49N, 16.5W) deployed on JC247 12 May 2023 to 31st August 2023.

description: Dissolved oxygen data (~1m depth on the Met Office (MO) Mobilis buoy keel) collected at the Porcupine Abyssal Plain - Sustained Observatory (PAP-SO) (49N, 16.5W) in the North East Atlantic ocean. Data were collected from 18:00 12th May 2023 (deployed on JC247) to 17:00 31 Aug 2023 as part of the CLASS project using an Aanderraa 4330 Optode (SN1279) with AML UV light used for the first time at PAP to reduce biofouling. Data has been processed assuming a constant salinity of 35.5. This concatenated file was generated by PAP_BuoyHub_proc21.c version 1.20. This dataset was collected and generated by scientists at the National Oceanography Centre, Southampton, UK.
DOI: 10.5066/p9ksevi1
title: Historic Water Chemistry Data for Thermal Features, Streams, and Rivers in the Yellowstone National Park Area, 1883-2021

description: Yellowstone National Park (YNP; Wyoming, Montana, and Idaho, USA) contains more than 10,000 hydrothermal features, several lakes, and four major watersheds. For more than 140 years, researchers at the U.S. Geological Survey and other scientific institutions have investigated the chemical compositions of hot springs, geysers, fumaroles, mud pots, streams, rivers, and lakes in YNP and surrounding areas. Water chemistry studies have revealed a range of compositions including waters with pH values ranging from about 1 to 10, surface temperatures from ambient to superheated values of 95°C, and elevated concentrations of silica, lithium, boron, fluoride, mercury, and arsenic. Hydrogeochemical data from YNP research have led to insights on subsurface conditions of temperature and chemistry, water-rock-gas interactions and processes of high-temperature mineral alteration with dissolution and precipitation, redox processes, thermophilic microbial metabolism under extreme conditions and effects of thermal water chemistry on river systems. In this Data Release, water chemistry data for 4,918 water samples are reported for numerous thermal features, rivers, streams, lakes, drillholes, and precipitation in and around YNP. The data for these samples were originally located in 38 reports published between 1888 and 2022 and in multiple unpublished documents. Spanning more than 600 unique sampling sites throughout the YNP region, this dataset includes samples collected as early as 1883 (Gooch & Whitfield, 1888) and as recently as 2021 (McCleskey, et al, 2022). The thermal features sampled most frequently include Cistern Spring (180 samples) and Echinus Geyser (73 samples) in Norris Geyser Basin and Ojo Caliente Spring (143 samples) in the Lower Geyser Basin, while more than 500 sites have 5 samples or fewer. Water chemistry data from thermal features, rivers, and streams are most represented, comprising 75% (thermal) and 17% (rivers/streams) of the dataset. Across all major areas of the park, Norris Geyser Basin has been sampled more than any other basin, with more than 1,100 samples reported in this dataset.
DOI: 10.6084/m9.figshare.23799064
title: DCLRE1A Contributes to DNA Damage Repair and Apoptosis in Age-Related Cataracts by Regulating the lncRNA/miRNA/mRNA Axis

description: Age-related cataract (ARC) is associated with the deregulation of transcription and defects in DNA repair in lens epithelial cells (LECs). DCLRE1A acted in DNA interstrand cross-links pathway to improve DNA replication and transcription. The aim of this study was to examined the further regulatory effect on DCLRE1A in the lncRNA-miRNA-mRNA network using a cell model of DCLRE1A overexpression (OE-DCLRE1A) in LECs. The expression level of DCLRE1A in ARC tissues and SRA01/04 cells after H<sub>2</sub>O<sub>2</sub> treatment was measured as protein and mRNA by qRT-PCR and Western Blot(WB). CCK8, and TUNEL assays detected the change in cell viability and apoptosis, respectively. Furthermore, Immunofluorescence assays detect the expression of DNA damaged and repair marker proteins after OE-DCLRE1A. The global expression profiles of lncRNAs, miRNAs, and mRNAs were determined using high-throughput sequencing. KEGG and GO enrichment analysis disclose the possible function of differentially expressed (DE) lncRNA, miRNA, and mRNA. The protein and mRNA of DCLRE1A were decreased in the anterior capsule of ARC and SRA01/04 cells treated by H<sub>2</sub>O<sub>2</sub>. OE-DCLRE1A improved damaged-DNA repair and enhanced cell viability against apoptosis after H<sub>2</sub>O<sub>2</sub> treatment. Furthermore, we demonstrated the DE-molecules between the OE-DCLRE1A and control groups including 595 DE-lncRNAs, 221 DE-miRNAs, and 4718 DE-mRNAs. Next, bioinformatics analysis not only found that the DE-mRNAs are mainly involved in DNA repair-related signaling pathways after OE-DCLRE1A, but also screened two lncRNA-miRNA-mRNA networks focusing on DNA damage activated by OE-DCLRE1A, which involved 2 lncRNAs, 2 miRNAs, and 53 mRNAs. We revealed that DCLRE1A activated the lncRNA/miRNA/DNA-repair network to take part in DNA repair processes, which not only represents a new regulatory mechanism employed by DCLRE1A but also uncovers the screening lncRNA may hold potential therapeutic values in ARC formation. However, these conclusions will need to be confirmed by future studies <i>in vitro</i> and <i>in vivo</i> models.
DOI: 10.6084/m9.figshare.19589262
title: Additional file 2 of VCP suppresses proteopathic seeding in neurons

description: Additional file 2.
DOI: 10.6084/m9.figshare.7546283.v1
title: Additional file 8: of Transcriptomic profiling reveals molecular regulation of seasonal reproduction in Tibetan highland fish, Gymnocypris przewalskii

description: Table S9. Correlation coefficients between modules and sample groups with corresponding p-values. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.22750639
title: Identification of SLC2A3 as a prognostic indicator correlated with the NF-κB/EMT axis and immune response in head and neck squamous cell carcinoma

description: SLC2A3 is an important member of the glucose transporter superfamily. It has been recently suggested that upregulation of SLC2A3 is associated with poor survival and acts as a prognostic marker in a variety of tumors. Unfortunately, the prognostic role of SLC2A3 in head and neck squamous cell carcinoma (HNSC) is less known. In the present study, we analyzed SLC2A3 expression in HNSC and its correlation with prognosis using TCGA and GEO databases. The results showed that SLC2A3 mRNA expression was higher in HNSC compared with adjacent normal tissues, which was validated with our 9 pairs of HNSC specimens. Moreover, high SLC2A3 expression predicted poor prognosis in HNSC patients. Mechanistically, GSEA revealed that high expression of SLC2A3 was enriched in epithelial-mesenchymal transition (EMT) and NF-κB signaling. In HNSC cell lines, SLC2A3 knockdown inhibited cell proliferation and migration. In addition, NF-κB P65 and EMT-related gene expression was suppressed upon SLC2A3 knockdown, indicating that SLC2A3 may play a preeminent role in the progression of HNSC through the NF-κB/EMT axis. Meanwhile, the expression of SLC2A3 was negatively correlated with immune cells, suggesting that SLC2A3 may be involved in the immune response in HNSC. The correlation between SLC2A3 expression and drug sensitivity was further assessed. In conclusion, our study demonstrated that SLC2A3 could predict the prognosis of HNSC patients and mediate the progression of HNSC via the NF-κB/EMT axis and immune responses.