cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.943332
title: Seawater carbonate chemistry and lithium elemental and isotope systematics of cultured brachiopods

description: Lithium has proven a powerful tracer of weathering processes and chemical seawater evolution. Skeletal components of marine calcifying organisms, and in particular brachiopods, present promising archives of Li signatures. However, Li incorporation mechanisms and potential influence from biological processes or environmental conditions require a careful assessment. In order to constrain Li systematics in brachiopod shells, we present Li concentrations and isotope compositions for 11 calcitic brachiopod species collected from six different geographic regions, paralleled with data from culturing experiments where brachiopods were grown under varying environmental conditions and seawater chemistry (pH–pCO2, temperature, Mg/Ca ratio). The recent brachiopod specimens collected across different temperate and polar environments showed broadly consistent δ7Li values ranging from 25.2 to 28.1‰ (with mean δ7Li of 26.9 ± 1.5‰), irrespective of taxonomic rank, indicating that incorporation of Li isotopes into brachiopod shells is not strongly affected by vital effects related to differences among species. This results in Δ7Licalcite–seawater values (per mil difference in 7Li/6Li between brachiopod calcite shell and seawater) from −2.9‰ to −5.8‰ (with mean Δ7Licalcite–seawater value of −3.6‰), which is larger than the Δ7Licalcite–seawater values calculated based on data from planktonic foraminifera (~0‰ to ~−4‰). This range of values is further supported by results from brachiopods cultured experimentally. Under controlled culturing conditions simulating the natural marine environment, the Δ7Licalcite–seawater for Magellania venosa was −2.5‰ and not affected by an increase in temperature from 10 to 16 °C. In contrast, a decrease in Mg/Ca (or Li/Ca) ratio of seawater by addition of CaCl2 as well as elevated pCO2, and hence low-pH conditions, resulted in an increased Δ7Licalcite-seawater up to −4.6‰. Collectively, our results indicate that brachiopods represent valuable archives and provide an envelope for robust Li-based reconstruction of seawater evolution over the Phanerozoic.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-04-19.
DOI: 10.1594/pangaea.959675
title: Seawater carbonate chemistry and resistance to ocean acidification in coral reef taxa

description: Ocean acidification (OA) is a major threat to coral reefs, which are built by calcareous species. However, long-term assessments of the impacts of OA are scarce, limiting the understanding of the capacity of corals and coralline algae to acclimatize to high partial pressure of carbon dioxide (pCO2) levels. Species-specific sensitivities to OA are influenced by its impacts on chemistry within the calcifying fluid (CF). Here, we investigate the capacity of multiple coral and calcifying macroalgal species to acclimatize to elevated pCO2 by determining their chemistry in the CF during a year-long experiment. We found no evidence of acclimatization to elevated pCO2 across any of the tested taxa. The effects of increasing seawater pCO2 on the CF chemistry were rapid and persisted until the end of the experiment. Our results show that acclimatization of the CF chemistry does not occur within one year, which confirms the threat of OA for future reef accretion and ecological function.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-06-08.
DOI: 10.1594/pangaea.959653
title: Seawater carbonate chemistry and metabolic rates and hypoxia tolerances of clearnose skate (Rostaraja eglanteria), summer flounder (Paralichthys dentatus), and thorny skate (Amblyraja radiata)

description: Understanding how rising temperatures, ocean acidification, and hypoxia affect the performance of coastal fishes is essential to predicting species-specific responses to climate change. Although a population's habitat influences physiological performance, little work has explicitly examined the multi-stressor responses of species from habitats differing in natural variability. Here, clearnose skate (Rostaraja eglanteria) and summer flounder (Paralichthys dentatus) from mid-Atlantic estuaries, and thorny skate (Amblyraja radiata) from the Gulf of Maine, were acutely exposed to current and projected temperatures (20, 24, or 28 °C; 22 or 30 °C; and 9, 13, or 15 °C, respectively) and acidification conditions (pH 7.8 or 7.4). We tested metabolic rates and hypoxia tolerance using intermittent-flow respirometry. All three species exhibited increases in standard metabolic rate under an 8 °C temperature increase (Q10 of 1.71, 1.07, and 2.56, respectively), although this was most pronounced in the thorny skate. At the lowest test temperature and under the low pH treatment, all three species exhibited significant increases in standard metabolic rate (44–105%; p &lt; 0.05) and decreases in hypoxia tolerance (60–84% increases in critical oxygen pressure; p &lt; 0.05). This study demonstrates the interactive effects of increasing temperature and changing ocean carbonate chemistry are species-specific, the implications of which should be considered within the context of habitat.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-06-08.
DOI: 10.1594/pangaea.959731
title: Seawater carbonate chemistry and in vivo 31P-MRS of muscle bioenergetics in marine invertebrates

description: Object：Dynamic in vivo 31P-NMR spectroscopy in combination with Magnetic Resonance Imaging (MRI) was used to study muscle bioenergetics of boreal and Arctic scallops (Pecten maximus and Chlamys islandica) to test the hypothesis that future Ocean Warming and Acidification (OWA) will impair the performance of marine invertebrates. Materials & methods： Experiments were conducted following the recommendations for studies of muscle bioenergetics in vertebrates. Animals were long-term incubated under different environmental conditions: controls at 0 °C for C. islandica and 15 °C for P. maximus under ambient PCO2 of 0.039 kPa, a warm exposure with +5 °C (5 °C and 20 °C, respectively) under ambient PCO2 (OW group), and a combined exposure to warmed acidified conditions (5 °C and 20 °C, 0.112 kPa PCO2, OWA group). Scallops were placed in a 4.7 T MR animal scanner and the energetic status of the adductor muscle was determined under resting conditions using in vivo 31P-NMR spectroscopy. The surplus oxidative flux (Qmax) was quantified by recording the recovery of arginine phosphate (PLA) directly after moderate swimming exercise of the scallops. Results：Measurements led to reproducible results within each experimental group. Under projected future conditions resting PLA levels (PLArest) were reduced, indicating reduced energy reserves in warming exposed scallops per se. In comparison to vertebrate muscle tissue surplus Qmax of scallop muscle was about one order of magnitude lower. This can be explained by lower mitochondrial contents and capacities in invertebrate than vertebrate muscle tissue. Warm exposed scallops showed a slower recovery rate of PLA levels (kPLA) and a reduced surplus Qmax. Elevated PCO2 did not affected PLA recovery further.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-06-08.
DOI: 10.1594/pangaea.936683
title: Seawater carbonate chemistry and gene expression (RT-PCR) and enzyme activity of the Antarctic coral Malacobelemnon daytoni

description: Benthic organisms of the Southern Ocean are particularly vulnerable to ocean acidification (OA), as they inhabit cold waters where calcite-aragonite saturation states are naturally low. OA most strongly affects animals with calcium carbonate skeletons or shells, such as corals and mollusks. We exposed the abundant cold-water coral Malacobelemnon daytoni from an Antarctic fjord to low pH seawater (LpH) (7.68 +/- 0.17) to test its physiological responses to OA, at the level of gene expression (RT-PCR) and enzyme activity. Corals were exposed in short- (3 days) and long-term (54 days) experiments to two pCO2 conditions (ambient and elevated pCO2 equaling RCP 8.5, IPCC 2019, approximately 372.53 and 956.78 μatm, respectively).Of the eleven genes studied through RT-PCR, six were significantly upregulated compared with control in the short-term in the LpH condition, including the antioxidant enzyme superoxide dismutase (SOD), Heat Shock Protein 70 (HSP70), Toll-like receptor (TLR), galaxin and ferritin. After long-term exposure to low pH conditions, RT-PCR analysis showed seven genes were upregulated. These include the mannose-binding C-Lectin and HSP90. Also, the expression of TLR and galaxin, among others, continued to be upregulated after long-term exposure to low pH. Expression of carbonic anhydrase (CA), a key enzyme involved in calcification, was also significantly upregulated after long-term exposure. Our results indicated that, after two months, M. daytoni is not acclimatized to this experimental LpH condition. Gene expression profiles revealed molecular impacts that were not evident at the enzyme activity level. Consequently, understanding the molecular mechanisms behind the physiological processes in the response of a coral to LpH is critical to understanding the ability of polar species to cope with future environmental changes. Approaches integrating molecular tools into Antarctic ecological and/or conservation research make an essential contribution given the current ongoing OA processes.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-10-05.
DOI: 10.1594/pangaea.959785
title: Seawater carbonate chemistry and population-specific vulnerability to ocean change in a multistressor environment

description: Variation in environmental conditions across a species' range can alter their responses to environmental change through local adaptation and acclimation. Evolutionary responses, however, may be challenged in ecosystems with tightly coupled environmental conditions, where changes in the covariance of environmental factors may make it more difficult for species to adapt to global change. Here, we conduct a 3-month-long mesocosm experiment and find evidence for local adaptation/acclimation in populations of red sea urchins, Mesocentrotus franciscanus, to multiple environmental drivers. Moreover, populations differ in their response to projected concurrent changes in pH, temperature, and dissolved oxygen. Our results highlight the potential for local adaptation/acclimation to multivariate environmental regimes but suggest that thresholds in responses to a single environmental variable, such as temperature, may be more important than changes to environmental covariance. Therefore, identifying physiological thresholds in key environmental drivers may be particularly useful for preserving biodiversity and ecosystem functioning.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-06-15.
DOI: 10.1594/pangaea.959915
title: Seawater carbonate chemistry and cellular metabolism of the great scallop Pecten maximus

description: In the ocean the main climate drivers affecting marine organisms are warming, hypercapnia, and hypoxia. We investigated the acute effects of warming (W), warming plus hypercapnia (WHc, ~1800 μatm CO2), warming plus hypoxia (WHo, ~12.1 kPa O2), and a combined exposure of all three drivers (Deadly Trio, DT) on king scallops (Pecten maximus). All exposures started at 14 °C and temperature was increased by 2 °C once every 48 h until the lethal temperature was reached (28 °C). Gill samples were taken at 14 °C, 18 °C, 22 °C, and 26 °C and analyzed for their metabolic response by 1H-nuclear magnetic resonance (NMR) spectroscopy. Scallops were most tolerant to WHc and most susceptible to oxygen reduction (WHo and DT). In particular under DT, scallops' mitochondrial energy metabolism was affected. Changes became apparent at 22 °C and 26 °C involving significant accumulation of glycogenic amino acids (e.g. glycine and valine) and anaerobic end-products (e.g. acetic acid and succinate). In line with these observations the LT50 was lower under the exposure to DT (22.5 °C) than to W alone (~ 25 °C) indicating a narrowing of the thermal niche due to an imbalance between oxygen demand and supply.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-06-20.
DOI: 10.1594/pangaea.959773
title: Seawater carbonate chemistry and response mechanism of harmful algae Phaeocystis globosa to ocean warming and acidification

description: Simultaneous ocean warming and acidification will alter marine ecosystem structure and directly affect marine organisms. The alga Phaeocystis globosa commonly causes harmful algal blooms in coastal areas of eastern China. P. globosa often outcompetes other species due to its heterotypic life cycle, primarily including colonies and various types of solitary cells. However, little is known about the adaptive response of P. globosa to ocean warming and acidification. This study aimed to reveal the global molecular regulatory networks implicated in the response of P. globosa to simultaneous warming and acidification. After exposure to warming and acidification, the phosphatidylinositol (PI) and mitogen-activated protein kinase (MAPK) signaling pathways of P. globosa were activated to regulate other molecular pathways in the cell, while the light harvesting complex (LHC) genes were downregulated to decrease photosynthesis. Exposure to warming and acidification also altered the intracellular energy flow, with more energy allocated to the TCA cycle rather than to the biosynthesis of fatty acids and hemolytic substances. The upregulation of genes associated with glycosaminoglycan (GAG) degradation prevented the accumulation of polysaccharides, which led to a reduction in colony formation. Finally, the upregulation of the Mre11 and Rad50 genes in response to warming and acidification implied an increase in meiosis, which may be used by P. globosa to increase the number of solitary cells. The increase in genetic diversity through sexual reproduction may be a strategy of P. globosa that supports rapid response to complex environments. Thus, the life cycle of P. globosa underwent a transition from colonies to solitary cells in response to warming and acidification, suggesting that this species may be able to rapidly adapt to future climate changes through life cycle transitions.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-06-15.
DOI: 10.1594/pangaea.960040
title: Seawater carbonate chemistry and the growth response of the toxic dinoflagellate Karenia selliformis from Patagonian waters of Chile

description: Northern Patagonia (41–44°S) is affected by climatic, hydrological and oceanographic anomalies, which in synergy with processes such as global warming and acidification of the coastal oceans may affect the frequency and intensity of harmful algal blooms (HABs). Greater frequency of HABs has been reported in the southeastern Pacific Ocean, including blooms of the toxic dinoflagellate Karenia selliformis, causing massive mortality of marine fauna in the oceanic and coastal areas of Patagonia. The objective of this study was to determine the effects of temperature and pH interaction on the growth of K. selliformis (strain CREAN_KS02), since these factors have wide seasonal fluctuations in the Patagonian fjord ecosystem. The CREAN_KS02 strain isolated from the Aysén Region (43°S) was used in a factorial experiment with five pH levels (7.0, 7.4, 7.7, 8.1 and 9.0) and two temperatures (12 and 17 °C) during a period of 18–21 days. Results indicated a significant effect of temperature and pH interaction on growth rate (range 0.22 ± 0.00 to 0.08 ± 0.01 d−1) and maximum density (range 13,710 ± 2,616 to 2,385 ± 809 cells mL−1) of K. selliformis. The highest density and growth of K. selliformis was found at 12 °C with a reduced pH (7.0–7.7). The results suggest that the current environmental conditions of coastal Patagonia, waters of low temperature and relatively low pH, may be favorable for the development of blooms of this species during autumn. We suggest that there is natural plasticity of K. selliformis in a wide pH range (7.0–8.1) but in a narrow low temperature range (10.6–12.9 °C), values that are typically recorded in the oceanic region of northern Patagonia. In contrast, in an extreme climate change scenario (ocean warming and coastal acidification) in northern Patagonia, a negative effect on the growth of K. selliformis may be expected due to amplification of the acidification effects caused by the thermal stress of high temperature water.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-06-25.
DOI: 10.15468/dl.h4cgty
title: Occurrence Download

description: A dataset containing 645676 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Harmonia axyridis (Pallas, 1773))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 645676 records from 1286 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015865-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2obnkm
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mabuya unimarginata Cope, 1862"
 ]
}

 The dataset includes 60 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010133-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.scb37k
title: Occurrence Download

description: A dataset containing 2198 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Contopus pallidus (Gosse, 1847)"
 ]
}

 The dataset includes 2198 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033732-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.liliak
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Alstroemeria brasiliensis Spreng."
 ]
}

 The dataset includes 30 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010133-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2rd7gq
title: Occurrence Download

description: A dataset containing 661 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erysimum pusillum Bory & Chaub."
 ]
}

 The dataset includes 661 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042166-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qgc43h
title: Occurrence Download

description: A dataset containing 193 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Disa draconis (L.f.) Sw."
 ]
}

 The dataset includes 193 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033740-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.esh2w3
title: Occurrence Download

description: A dataset containing 300 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceriops zippeliana Blume"
 ]
}

 The dataset includes 300 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045291-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fbc0pj
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Inia geoffrensis (Blainville, 1817)"
 ]
}

 The dataset includes 196 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010134-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.