cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3669919_d14
title: Additional file 11: of The interaction between vaginal microbiota, cervical length, and vaginal progesterone treatment for preterm birth risk

description: Gestational age at vaginal sampling in high-risk control and progesterone groups.
DOI: 10.6084/m9.figshare.c.3669967_d2
title: MOESM2 of Effects of Plasmodium falciparum infection on umbilical artery resistance and intrafetal blood flow distribution: a Doppler ultrasound study from Papua New Guinea

description: Additional file 2. Malaria infection, nutritional factors, smoking, and other potential associations with elevated umbilical artery resistance index (UARI, &gt;90th centile) during pregnancy in PNG women In contrast to other cohorts, nutritional factors such as MUAC, height and anaemia were not associated with increased UARI. Smoking tobacco, a known risk factor for elevated UARI approached significance (PÂ =Â 0.085) while other risk behaviours, such as chewing betelnut and drinking alcohol, showed no association.
DOI: 10.6084/m9.figshare.c.3669940_d9.v1
title: Additional file 2: of Phylogenomic analysis of Copepoda (Arthropoda, Crustacea) reveals unexpected similarities with earlier proposed morphological phylogenies

description: This file contains the copepod amino acid sequences in FASTA format. (TXT 71 kb)
DOI: 10.6084/m9.figshare.c.3670009_d2
title: Additional file 4: of The use of genome-scale metabolic network reconstruction to predict fluxes and equilibrium composition of N-fixing versus C-fixing cells in a diazotrophic cyanobacterium, Trichodesmium erythraeum

description: MakeTERY function to establish constraints and create separate models. This file contains all relevant constraints for the two different cell types. By default, it also generates the optimal solutions subject to literature constraints as described in the FBA and FVA sections of the paper. (M 2 kb)
DOI: 10.15468/dl.2bjzuu
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bellator brachychir (Regan, 1914)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 14 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038285-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3670009_d3.v1
title: Additional file 1: of The use of genome-scale metabolic network reconstruction to predict fluxes and equilibrium composition of N-fixing versus C-fixing cells in a diazotrophic cyanobacterium, Trichodesmium erythraeum

description: Genome scale metabolic reconstruction for T. erythraeum. This file contains the full SBML formatted genome scale reconstruction of Trichodesmium erythraeum (iTery101) described by this study without constraints. (XML 1720 kb)
DOI: 10.6084/m9.figshare.c.3670009_d3
title: Additional file 1: of The use of genome-scale metabolic network reconstruction to predict fluxes and equilibrium composition of N-fixing versus C-fixing cells in a diazotrophic cyanobacterium, Trichodesmium erythraeum

description: Genome scale metabolic reconstruction for T. erythraeum. This file contains the full SBML formatted genome scale reconstruction of Trichodesmium erythraeum (iTery101) described by this study without constraints. (XML 1720 kb)
DOI: 10.6084/m9.figshare.c.3670045_d2.v1
title: Additional file 6: Table S6. of Comparative RNA-seq based transcriptomic analysis of bud dormancy in grape

description: Differentially expressed genes involved in KEGG pathway between summer buds vs endo dormancy. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3670045_d2
title: Additional file 6: Table S6. of Comparative RNA-seq based transcriptomic analysis of bud dormancy in grape

description: Differentially expressed genes involved in KEGG pathway between summer buds vs endo dormancy. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3670045_d3.v1
title: Additional file 2: Table S2. of Comparative RNA-seq based transcriptomic analysis of bud dormancy in grape

description: Differentially expressed genes between summer buds vs endodormancy. (XLSX 448Â kb)
DOI: 10.6084/m9.figshare.c.3670057_d1.v1
title: Additional file 13: of Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny

description: List of genes that exhibited lower expression level in PR group relative to CD group in adult brain. Table also includes identifiers such as probe name, PrimaryAccession ID, GeneSymbol, Gene ontology (GO), Gene description, chromosome number, P value in Tukeyâ  s multiple comparison test adjusted by FDR, and mean fold change of expression level. (CSV 11 kb)
DOI: 10.6084/m9.figshare.c.3670045_d3
title: Additional file 2: Table S2. of Comparative RNA-seq based transcriptomic analysis of bud dormancy in grape

description: Differentially expressed genes between summer buds vs endodormancy. (XLSX 448Â kb)
DOI: 10.6084/m9.figshare.c.3670057_d1
title: Additional file 13: of Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny

description: List of genes that exhibited lower expression level in PR group relative to CD group in adult brain. Table also includes identifiers such as probe name, PrimaryAccession ID, GeneSymbol, Gene ontology (GO), Gene description, chromosome number, P value in Tukeyâ  s multiple comparison test adjusted by FDR, and mean fold change of expression level. (CSV 11 kb)
DOI: 10.15468/dl.m7gzaf
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bellator egretta (Goode & Bean, 1896)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038286-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3670057_d10.v1
title: Additional file 17: of Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny

description: List of genes that exhibited lower expression level in FA group relative to PR group in adult brain. Table also includes identifiers such as Probe name, PrimaryAccession ID, GeneSymbol, Gene ontology (GO), Gene description, chromosome number, P value in Tukeyâ  s multiple comparison test adjusted by FDR, and mean fold change of expression level. (CSV 1 kb)
DOI: 10.6084/m9.figshare.c.3670057_d9
title: Additional file 7: of Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny

description: Supplemental information 1. HMM regions in which methylation levels were lower in PR group relative to CD group. Table also includes identifiers such as gene symbol, Transcript ID, Distance to TSS, percent overlap with region, precise chromosome location of the region, region length, PGS region ID, markers (number of probes), mean enrichment level across the region (fold enrichment), and HMM state (s-HMM: -5, m-HMM: -3, l-HMM: -1.5). (CSV 25 kb)
DOI: 10.6084/m9.figshare.c.3670057_d10
title: Additional file 17: of Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny

description: List of genes that exhibited lower expression level in FA group relative to PR group in adult brain. Table also includes identifiers such as Probe name, PrimaryAccession ID, GeneSymbol, Gene ontology (GO), Gene description, chromosome number, P value in Tukeyâ  s multiple comparison test adjusted by FDR, and mean fold change of expression level. (CSV 1 kb)
DOI: 10.6084/m9.figshare.c.3670057_d12.v1
title: Additional file 10: of Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny

description: HMM regions in which methylation levels were higher in FA group relative to CD group. Table also includes identifiers such as gene symbol, Transcript ID, Distance to TSS, percent overlap with region, precise chromosome location of the region, region length, PGS region ID, markers (number of probes), mean enrichment level across the region (fold enrichment), and HMM state (s-HMM: +5, m-HMM: +3, l-HMM: +1.5). (CSV 19 kb)
DOI: 10.6084/m9.figshare.c.3670057_d13.v1
title: Additional file 18: of Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny

description: List of genes that exhibited higher expression level in FA group relative to PR group in adult brain. Table also includes identifiers such as Probe name, PrimaryAccession ID, GeneSymbol, Gene ontology (GO), Gene description, chromosome number, P value in Tukeyâ  s multiple comparison test adjusted by FDR, and mean fold change of expression level. (CSV 1 kb)
DOI: 10.6084/m9.figshare.c.3670114_d3.v1
title: Additional file 4: of Dietary treatment of Crohnâ  s disease: perceptions of families with children treated by exclusive enteral nutrition, a questionnaire survey

description: Raw data analysed during this study. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3670057_d12
title: Additional file 10: of Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny

description: HMM regions in which methylation levels were higher in FA group relative to CD group. Table also includes identifiers such as gene symbol, Transcript ID, Distance to TSS, percent overlap with region, precise chromosome location of the region, region length, PGS region ID, markers (number of probes), mean enrichment level across the region (fold enrichment), and HMM state (s-HMM: +5, m-HMM: +3, l-HMM: +1.5). (CSV 19 kb)
DOI: 10.6084/m9.figshare.c.3671752_d3.v1
title: Additional file 3: of Stepped wedge cluster randomized controlled trial designs: a review of reporting quality and design features

description: Included studies and the information extracted from them, along with the records from each of the major stages of the review. (XLSX 5750 kb)
DOI: 10.15468/dl.vzu7c6
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bellator militaris (Goode & Bean, 1896)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 72 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038287-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3671842_d3
title: Additional file 3: Table S1. of Hh/Gli antagonist in acute myeloid leukemia with CBFA2T3-GLIS2 fusion gene

description: Genetic features of control AML cell lines. * Data provided by DSMZ and by literature. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3672649_d2.v1
title: Additional file 5: Table S2. of Transcriptome profiling of gene expression during immunisation trial against Fasciola hepatica: identification of genes and pathways involved in conferring immunoprotection in a murine model

description: The table lists the number of genes differentially expressed as a direct result of the immunisation trial. Differential expression has been calculated in each microarray by using the robust microarray analysis algorithm and the significance analysis of microarrays method. Up-regulated genes are shown in red whilst down-regulated are shown in green. Table S3. The Ingenuity Pathway Analysis tool was used for identifying the signalling pathways and their associated-genes differentially expressed by the immunisation trial. Up-regulation is shown in red whilst down-regulation is shown in green. Table S4. Biological functions and their associated genes differentially expressed by the immunisation trial were identified by using the Ingenuity Pathway Analysis tool. Up-regulation is shown in red whilst down-regulation is shown in green. Table S5. Immunisation of mice with a combination of peptides containing T-cell epitopes led to the differential expression of 37 genes (p &lt;0.05; fold change +/− 2). Up-regulation is shown in red whilst down-regulation is shown in green. (XLSX 257 kb)
DOI: 10.6084/m9.figshare.c.3672649_d2
title: Additional file 5: Table S2. of Transcriptome profiling of gene expression during immunisation trial against Fasciola hepatica: identification of genes and pathways involved in conferring immunoprotection in a murine model

description: The table lists the number of genes differentially expressed as a direct result of the immunisation trial. Differential expression has been calculated in each microarray by using the robust microarray analysis algorithm and the significance analysis of microarrays method. Up-regulated genes are shown in red whilst down-regulated are shown in green. Table S3. The Ingenuity Pathway Analysis tool was used for identifying the signalling pathways and their associated-genes differentially expressed by the immunisation trial. Up-regulation is shown in red whilst down-regulation is shown in green. Table S4. Biological functions and their associated genes differentially expressed by the immunisation trial were identified by using the Ingenuity Pathway Analysis tool. Up-regulation is shown in red whilst down-regulation is shown in green. Table S5. Immunisation of mice with a combination of peptides containing T-cell epitopes led to the differential expression of 37 genes (p &lt;0.05; fold change +/− 2). Up-regulation is shown in red whilst down-regulation is shown in green. (XLSX 257 kb)
DOI: 10.6084/m9.figshare.c.3672652_d3
title: Additional file 7: Table S5. of Chicken (Gallus gallus) endogenous retrovirus generates genomic variations in the chicken genome

description: Investigation of full-length GGERV10 elements. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3672652_d3.v1
title: Additional file 7: Table S5. of Chicken (Gallus gallus) endogenous retrovirus generates genomic variations in the chicken genome

description: Investigation of full-length GGERV10 elements. (XLSX 18Â kb)
DOI: 10.15468/dl.bf7prc
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "Geometry POLYGON((-73.55939 11.298,-73.77916 11.81447,-74.42749 11.50679,-74.20772 11.24306,-73.86707 11.22108,-73.55939 11.298))",
 "StateProvince is one of (magdalena)",
 "TaxonKey is one of (Cetacea)"
 ]
 }
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038288-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3672652_d12.v1
title: Additional file 2: Table S2. of Chicken (Gallus gallus) endogenous retrovirus generates genomic variations in the chicken genome

description: Summary of full-length GGERV10 elements. (XLSX 14Â kb)
DOI: 10.15468/dl.j7y5w6
title: Occurrence Download

description: A dataset containing 291179 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen)",
 "Continent is one of (North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Parulidae",
 "Year 1970-1979"
 ]
}

 The dataset includes 291179 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038283-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3672652_d12
title: Additional file 2: Table S2. of Chicken (Gallus gallus) endogenous retrovirus generates genomic variations in the chicken genome

description: Summary of full-length GGERV10 elements. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3672652_d13.v1
title: Additional file 12: of Chicken (Gallus gallus) endogenous retrovirus generates genomic variations in the chicken genome

description: Sequence alignment of GGERV10B_311 locus in three chicken breeds. (FAS 10Â kb)
DOI: 10.6084/m9.figshare.c.3672652_d13
title: Additional file 12: of Chicken (Gallus gallus) endogenous retrovirus generates genomic variations in the chicken genome

description: Sequence alignment of GGERV10B_311 locus in three chicken breeds. (FAS 10Â kb)
DOI: 10.15468/dl.sh2fv3
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bellator xenisma (Jordan & Bollman, 1890)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 70 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038289-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3672736_d1.v1
title: Additional file 3: of Dynamic substrate preferences predict metabolic properties of a simple microbial consortium

description: Supplemental Table 1. (XLSX 55Â kb)
DOI: 10.6084/m9.figshare.c.3672736_d1
title: Additional file 3: of Dynamic substrate preferences predict metabolic properties of a simple microbial consortium

description: Supplemental Table 1. (XLSX 55Â kb)
DOI: 10.6084/m9.figshare.c.3672742_d1
title: Additional file 3: Table S2. of 3D clusters of somatic mutations in cancer reveal numerous rare mutations as functional targets

description: All residues of their classes of the identified 3D clusters. (XLSX 122 kb)
DOI: 10.6084/m9.figshare.c.3672742_d1.v1
title: Additional file 3: Table S2. of 3D clusters of somatic mutations in cancer reveal numerous rare mutations as functional targets

description: All residues of their classes of the identified 3D clusters. (XLSX 122 kb)
DOI: 10.6084/m9.figshare.c.3674719_d1.v1
title: Additional file 4: of Physical examination tests of the shoulder: a systematic review and meta-analysis of diagnostic test performance

description: QUADAS score table (containing scores for all articles assessed). (XLS 2873Â kb)
DOI: 10.6084/m9.figshare.c.3674722_d1.v1
title: Additional file 2: Table S2. of Distinct histone methylation and transcription profiles are established during the development of cellular quiescence in yeast

description: Lists of genes associated with H3K4me3, H3K36me3, H3K79me3, and RNAP II in growing and quiescent cells. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3674719_d1
title: Additional file 4: of Physical examination tests of the shoulder: a systematic review and meta-analysis of diagnostic test performance

description: QUADAS score table (containing scores for all articles assessed). (XLS 2873Â kb)
DOI: 10.6084/m9.figshare.c.3674722_d1
title: Additional file 2: Table S2. of Distinct histone methylation and transcription profiles are established during the development of cellular quiescence in yeast

description: Lists of genes associated with H3K4me3, H3K36me3, H3K79me3, and RNAP II in growing and quiescent cells. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3674731_d1.v1
title: MOESM11 of Identification of small molecule modulators of HIV-1 Tat and Rev protein accumulation

description: Additional file 11: Table S6. Dataset from RNA-seq quantitating the expression levels of genes in cells treated with 9147791
DOI: 10.6084/m9.figshare.c.3674731_d1
title: MOESM11 of Identification of small molecule modulators of HIV-1 Tat and Rev protein accumulation

description: Additional file 11: Table S6. Dataset from RNA-seq quantitating the expression levels of genes in cells treated with 9147791
DOI: 10.15468/dl.x3tmqz
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bellottia apoda Giglioli, 1883",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038291-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3674731_d7.v1
title: MOESM10 of Identification of small molecule modulators of HIV-1 Tat and Rev protein accumulation

description: Additional file 10: Table S5. Dataset from RNA-seq showing genes with alternative splicing changes in cells treated with 9147791
DOI: 10.6084/m9.figshare.c.3674719_d6.v1
title: Additional file 1: Table S1. of Physical examination tests of the shoulder: a systematic review and meta-analysis of diagnostic test performance

description: Detailed description of the literature search strategy. (XLS 31Â kb)
DOI: 10.6084/m9.figshare.c.3674719_d6
title: Additional file 1: Table S1. of Physical examination tests of the shoulder: a systematic review and meta-analysis of diagnostic test performance

description: Detailed description of the literature search strategy. (XLS 31Â kb)
DOI: 10.6084/m9.figshare.c.3674731_d7
title: MOESM10 of Identification of small molecule modulators of HIV-1 Tat and Rev protein accumulation

description: Additional file 10: Table S5. Dataset from RNA-seq showing genes with alternative splicing changes in cells treated with 9147791
DOI: 10.6084/m9.figshare.c.3674758_d2.v1
title: Additional file 2: of Risk of travel-related cases of Zika virus infection is predicted by transmission intensity in outbreak-affected countries

description: Data used in this study. (XLSX 13 kb)
DOI: 10.15468/dl.fr8atm
title: Occurrence Download

description: A dataset containing 6788 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anagyris L."
 ]
}

 The dataset includes 6788 records from 201 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038290-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3674731_d9.v1
title: MOESM7 of Identification of small molecule modulators of HIV-1 Tat and Rev protein accumulation

description: Additional file 7: Table S2. Dataset from RT-PCR determination of the alternative splicing changes in cells treated with 9147791
DOI: 10.6084/m9.figshare.c.3674758_d2
title: Additional file 2: of Risk of travel-related cases of Zika virus infection is predicted by transmission intensity in outbreak-affected countries

description: Data used in this study. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3674731_d9
title: MOESM7 of Identification of small molecule modulators of HIV-1 Tat and Rev protein accumulation

description: Additional file 7: Table S2. Dataset from RT-PCR determination of the alternative splicing changes in cells treated with 9147791
DOI: 10.6084/m9.figshare.c.3674815_d2
title: Additional file 4: of Resolved phylogeny and biogeography of the root pathogen Armillaria and its gasteroid relative, Guyanagaster

description: Results from the ancestral range estimation analysis. (XLSX 38 kb)