cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/cc5dlpt
title: CCDC 161066: Experimental Crystal Structure Determination

description: Related Article: P.S.Aburel, C.Romming, Kuangbiao Ma, K.Undheim|2001|J.Chem.Soc.,Perkin Trans.1||1458|doi:10.1039/b101462p
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.12782516
title: Observed changes in significant wave heights derived from long-term homogenized measurements offshore mainland Portugal

description: The data set contains statistical estimators of significant height acquired over the last 40 years by wave stations operating on the Portuguese coast; Monthly Mean, Monthly Maximum and the monthly 99, 95, 90, 50 , 10 percentiles

The data was calculated based on long-term homogenized 3h series of in-situ significant wave height

These buoys have been maintained by the Instituto Hidrografico and constitute one of the longest time series of wave data.

Each file correspond to a particular wave station. All files are in ASCII and have the same 9 column format. The heading identify the variables

Leixoes_corr_monthly_percentiles.txt  - Data acquired by Leixoes buoy: Location 41º 19.00' N  8º 59.00' W, depth app 100 m

Sines_corr_monthly_percentiles.txt - Data acquired by Sines buoy: Location 37º 55.27' N  8º 55.73 ' W, depth app 100 m

Faro_coor_monthly_percentiles.txt - Data acquired by Faro buoy: Location 36º 54.28' N 7º 53.90' W, depth app 100 m
DOI: 10.5281/zenodo.13905298
title: Evaluation of Spectral Light Simulation Tools For Prediction of ipRGC-influenced Light Responses in Field Conditions

description: Spectral light simulation tools can be used to optimize lighting design in built environments for occupants’ ipRGC-influenced light (IIL) responses. The accuracy of these tools has been previously tested against measurements in controlled, neutral-colored spaces. This study aims to evaluate the accuracy of ALFA and Lark spectral light simulation tools in spectrally and geometrically complex environments. The methods consist of comparison of spectral irradiance, three IIL response metrics, and photopic illuminance in two office rooms in a university building. Measurements and simulations are performed in daylight, electric light, and combination of daylight and electric light. The dataset presented here documents this research.
DOI: 10.5281/zenodo.16330717
title: Tomorrow.io Microwave Sounder (TMS) data for January 2025 OSE

description: This dataset is provided by The Tomorrow Companies Inc.  It contains L1-TBR V01-00 Tomorrow.io Microwave Sounder (TMS) observations, formatted for consumption in Joint Effort for Data assimilation Integration (JEDI) applications using the Interface for Observation Data Access (IODA) version 3 format (e.g., HofX, Variational). Observations are supplied from the TMS-S02 and TMS-S04 instruments during January 2025.  Each file contains data from a one hour window.  This is an addendum to a publication submitted for peer-review to the Quarterly Journal of the Royal Meteorological Society.  This limited subset of an otherwise proprietary dataset provides all of the TMS data and metadata needed to replicate the experiments described therein.

As a commercial mission, full access to the TMS datasets is otherwise restricted.  Samples of the TMS level 1B-TBR products in their as-distributed format are available at https://www.tomorrow.io/satellite-data/data-catalog/l1b-tbr/.  At the time of submission, additional data from TMS are under evaluation by NOAA's CWDP, and are available to academic and international partner institutions.
DOI: 10.5281/zenodo.15522350
title: 46 Instrumentally Observed Meteorite Falls

description: This is a compiled list of recovered meteorite falls with orbital and trajectory information, used in Shober (2025) "Statistical significance of meteorite-asteroid pairs using geocentric parameters"
DOI: 10.5281/zenodo.15530832
title: 46 instrumentally observed meteorite falls and 535 possible meteorite dropping fireballs observed by GFO/FRIPON/EFN sensors

description: This is a compiled list of recovered meteorite falls with orbital and trajectory information, used in Shober (2025) "Statistical significance of meteorite-asteroid pairs using geocentric parameters"

The 535 meteorite falls included are from the same dataset used in Shober et al. (2025), "Perihelion history and atmospheric survival as primary drivers of the Earth's meteorite record," and only include those with at least 20% observed atmospheric declination. We have also included the geocentric radiant to calculate the dissimilarity parameter as described by Valsecchi et al. (1999).
DOI: 10.5281/zenodo.14924229
title: Data for: Phylogenomics resolves the relationships among Hydrophiloidea-Histeroidea families (Coleoptera) and challenges the single colonization of aquatic habitats
DOI: 10.5281/zenodo.14003744
title: Unravelling pain in Göttingen Minipigs undergoing experimentally induced closed-chest myocardial infarction.

description: This file contains mechanical and thermal pain thresholds recorded in adult Göttingen Minipigs before and after experimentally induced myocardial infarction. 

Mechanical thresholds were recorded with a manual algometer (tip size 1 cm2); thermal thresholds consisted in heat contact stimuli. Thresholds were recorded at different body sites, namely: LC: left chest; RC: right chest; LF: left forearm; RF: right forearm; LN: left neck; RN: right neck. 

The Excel file also provides demographic data, physiological parameters (heart rate and respiratory rate), biomarkers (troponin I and cytokines), and feasibility scores.
DOI: 10.5281/zenodo.13919571
title: cultural distance and acculturation preferences in post-Soviet societies

description: Data from six post-Soviet countries are presented. including indicators of cultural distance, permeability of ethnic boundaries and acculturation preferences. The database contains 12 files. The data for each country is presented in two files. One file contains data on the ethnic majority of the country, and the second file contains data on the Russian population of this post-Soviet country.
DOI: 10.5281/zenodo.15305461
title: One-step Separation of Lithium from Natural Ores in Seconds
DOI: 10.5281/zenodo.14587215
title: Hourly streamflow events and their characteristics

description: This is the dataset of streamflow events and their characteristics identified from hourly time series of 199 German catchments analyzed in the study by Aala et al. "Exploring Controls on Rainfall-Runoff Events: 3. The Effects of Space-Time Dynamics of Precipitation on the Shape and Timing of Event Hydrographs" (submitted to Water Resources Research)
DOI: 10.5281/zenodo.15586176
title: Avifauna from the MSA deposits at Sibhudu Cave, KwaZulu-Natal, South Africa

description: Excel database of taxonomic, anatomical and taphonomic attributions and descriptions of the avifaunal assemblage collected during excavations at Sibhudu Cave in South Africa. The database contains only the bird material retrieved during excavation led by the Tuebingen team (PI Prof. Nicholas Conard), between 2011 and 2020.
DOI: 10.5281/zenodo.15084949
title: 2008-2023 glacier elevation change and rock glacier velocity in Monte San Lorenzo, Patagonia
title: Cambio de elevación de los glaciares y velocidad de los glaciares de escombro (2008-2023) en el Monte San Lorenzo, Patagonia

description: This dataset contains outlier removed, gap filled elevation change raster files (TIFF format, in meters per year) of the glaciers in Monte San Lorenzo from 2018 to 2023. It also contains rock glacier velocity raster files (TIFF format, in meters per year) of rock glaciers in Monte San Lorenzo from from 2008 to 2018 and from 2018 to 2023.
description: Este dataset contiene archivos raster de cambio de elevación de los glaciares del Monte San Lorenzo (formato TIFF, en metros por año) de 2018 a 2023. También contiene archivos raster de velocidad de glaciares de roca (formato TIFF, en metros por año) en el Monte San Lorenzo de 2008 a 2018 y de 2018 a 2023.
DOI: 10.5281/zenodo.15995952
title: Data from: Characterizing climate- and fire-driven habitat vulnerability for an old-forest species

description: Abstract



Context.          

Changes in climate and associated disturbance regimes are altering patterns of biodiversity by shifting macroenvironmental conditions and modifying the structure and composition of critical habitat. These threats require conservation planning to understand the vulnerability of species habitat to changes in climate.

Objectives.

We developed a framework to address this need for the Mexican spotted owl (Strix occidentalis lucida), a species whose range is experiencing widespread climate-driven increases in wildfire and drought that can have adverse impacts upon large, old trees, a vital habitat element for owl nesting and roosting.

Methods.

We leveraged broad-scale data describing owl habitat quality, predicted fire severity, and tree recruitment probability to quantify the vulnerability of this species’ habitat in the southwestern United States.

Results.

Owl habitat quality was positively associated with predicted fire severity and negatively associated with tree recruitment potential, indicating that portions of the Mexican spotted owl’s existing range may be vulnerable to forest recruitment failure and, under extreme weather, high-severity wildfire. Despite these patterns, we also identified large patches of high-quality habitat that have the potential to resist high-severity fire and foster tree recruitment, which are likely to sustain current forest communities, and owl nesting and roosting habitat in the near-term.

Conclusions.

In identifying the relative vulnerability of habitat across a broad spatial extent, our framework provides a valuable tool for the conservation of this and other old-forest-obligate species, and habitat specialists in general. More broadly, the framework we have developed may help prioritize limited conservation resources to effectively promote biodiversity in an increasingly dynamic world.


Methods





This archive includes statistical models and spatial data used to predict the vulnerability of Mexican spotted owl (Strix occidentalis lucida) habitat to high-severity wildfire and tree recruitment failure throughout Arizona and New Mexico, USA.

See "README.md" for information about datasets and their collection.
DOI: 10.5281/zenodo.15802241
title: Automating Candidate Gene Prioritization with Large Language Models: From Naive Scoring to Literature-Grounded Validation Using Advanced NLP Technique

description: This dataset provides a persistent ChromaDB vector index built from a curated corpus of documents, designed for use in Retrieval-Augmented Generation (RAG) systems powered by large language models (LLMs). The index enables fast semantic retrieval and integrates seamlessly with the LlamaIndex framework.

The index was generated using [SPECTRE2 , sentence-transformers/all-MiniLM-L6-v2] and is optimized for low-latency querying with applications in question answering, literature synthesis, and knowledge retrieval tasks.

The full ChromaDB persistence directory is included, consisting of:





chroma.sqlite — metadata and collection tracking




collections/ — collection definitions




index/ — serialized vector data



This resource supports developers and researchers building domain-specific RAG pipelines, and can be used as a drop-in vector store within the LlamaIndex VectorStoreIndex loading pipeline.

How to load: 

from llama_index.vector_stores.chroma import ChromaVectorStorefrom llama_index import StorageContext, load_index_from_storage

persist_dir = "/path/to/unzipped_chromadb_index"

vector_store = ChromaVectorStore(persist_dir=persist_dir)storage_context = StorageContext.from_defaults(persist_dir=persist_dir, vector_store=vector_store)index = load_index_from_storage(storage_context)

 

📌 Requires: llama-index, chromadb, sentence-transformers or custom SPECTER2 encoder if querying new docs.

 

🔬 Applications





Scientific question answering




Literature triage and summarization




RAG-based expert assistant tools




LLM-powered knowledge mining





🏷️ Keywords

ChromaDB, LlamaIndex, SPECTER2, Scientific Retrieval, RAG, Vector Index, Semantic Search, LLM, Biomedical NLP, AI for Science
DOI: 10.5281/zenodo.13968728
title: Dataset for Multi-LiDAR Extrinsic Calibration in Maritime Scenarios

description: The dataset provides ROS-data in .mcap file format of several LiDAR sensors for the purpose of extrinsic multi-LiDAR calibration in maritime scenarios. 

The dataset contains seven scenes with waterside faced sensors with a small boat and a calibration target passing by, two scenes with landside facing sensors and a calibration target moved on ground as well as an additional landside scene with wearing a highly reflective warning vest instead of a moving calibration target.

Further, the ground-truth relative poses between two sensors are provided.
description: Scene
(Boat) Properties (with Target)
# Scans
avg. Points
Reflector Distance (m)
max. spread x (m)
max. spread y (m)
max. spread z (m)


Water 1
short movement, fast at fixedclose distance
248
3962
24 - 31
161.98
304.83
29.35


Water 2
slow at varying, close distance
851
1820
12 - 40
156.68
300.8
29.32


Water 3
slow at varying, far distance
896
1396
40 - 80
146.32
300.5
29.51


Water 4
fast at varying, far distance
647
1513
36 - 73 
149.98
300
29.27


Water 5
boat long standstill, slow, fixed,far distance, short movement
259
720
71 - 88
139
293.66
18.34


Water 6
fast, fixed, close distance
386
2430
29 - 38
160.22
294.9
17.82


Water 7
fast, varying, close distance
437
2938
20 - 40
164.9
294.2
17.79


Land 1
moving target by hand at landside 
755
32716
16 - 30
183.26
314.35
31.91


Land 2
moving target at hand by landside 
805
32953
17 - 32
183.28
313.41
32.08


Warn Vest
static reflector disturbance,wearing jacket, changing surface 
595
58568
4.5 - 20.5
136.9
213.7
20.72
DOI: 10.15468/dl.tp2rdv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Mantidactylus betsileanus)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081866-250717081556266/datasets/export for details.
DOI: 10.3535/p4z-px6-qag
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ncs-saz-ezs
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/px7-zgz-4vt
title: Oryzomys Baird, 1857

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0ch-p8s-tv5
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2c2-xzs-rf7
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p01-90d-zdw
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dcj-w9j-pv1
title: Pseudopus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hv2-z0f-ty8
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/erh-tc5-7pe
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mfx-3da-frv
title: Pseudopus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r3e-7nh-w37
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/whc-xhm-rs5
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zhk-ae1-r25
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ar2-537-hsk
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nt7-q49-am4
title: Thomasomys Coues, 1884

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h7k-fe0-4t6
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kdv-lcm-a46
title: †Prolagus Pomel, 1853

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mva-gpd-ze5
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7jl-p85-9lp
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pg3-g7b-q8w
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/191-gf3-10g
title: Lamna

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/87f-6jt-gky
title: Cervus elaphus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fxt-7fc-l3q
title: Bos Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/857-59n-hff
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s2s-wrl-v07
title: Lacertidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3f4-8kq-zve
title: Lacertidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mrf-xjw-dfe
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/px2-yxe-kka
title: Coluber

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/crp-30g-dqt
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s3r-gyt-jv0
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/26e-nyq-4np
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4gn-z96-dg1
title: Oryzomys Baird, 1857

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7fj-8h3-x8s
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8p7-d9t-vlv
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.uxpkrh
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Monomorium destructor",
 "Country is United Arab Emirates",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022569-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/035-av0-m8s
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v1m-hfw-0h1
title: Atlantoxerus Forsyth Major, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wve-jtb-gqf
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/za8-n01-498
title: Ursus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/339-wjd-7wz
title: Trionyx

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/egp-fzq-qf8
title: Chordata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.z7x7e4
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Zealand",
 "OccurrenceStatus is Present",
 "TaxonKey is Reynoutria multiflora"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035315-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nun8wv
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scorpaena cyanostigma"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035314-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12728482
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.16790562
title: Thalamo-hippocampal pathway determines aggression and self-harm

description: releasing of a sample data along with MATLAB files and associated date for paper.
@Shinlab   @Aspenthedog
DOI: 10.5281/zenodo.16790563
title: Thalamo-hippocampal pathway determines aggression and self-harm

description: releasing of a sample data along with MATLAB files and associated date for paper.
@Shinlab   @Aspenthedog
DOI: 10.15468/dl.ae69wf
title: Occurrence Download

description: A dataset containing 985 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sebastapistes strongia"
 ]
}

 The dataset includes 985 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035316-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.