cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/t4vnpsmhnk
title: Ultrasonic-Assisted Micro Solid Phase Extraction of Arsenic on a New Ion-Imprinted Polymer Synthesized from Chitosan-Stabilized Pickering Emulsion in Water, Rice and Vegetable Samples

description: Pickering emulsion polymerization has been employed for the Ultrasonic assisted-micro solid phase extraction (UA-µSPE) of ultra trace arsenic species by a new magnetic ion imprinted polymer (MIIP) prior to hydride generation atomic absorption spectrometry. Hydride generation atomic absorption spectrometry (HGAAS) has been used due to its fast analysis time, simplicity, acceptable selectivity and inexpensive cost. 2-acetyl benzofuran thiosemicarbazone (2-ABT) as a new chelating agent and core- shell hydrophobic magnetic nanoparticles was synthesized and the polymerization was carried out at the presence of arsenic - ligand complex, crosslinker, monomer, initiator, stabilizing agent and water-oil emulsion magnetic carrier. The polymerization of IIP is usually carried out by covalent or non-covalent interactions between functional monomer and targeted template ion. The use of ultrasonic waves in polymerization process due to the cavitation effect and acoustic shock through physical phenomena such as micro-streaming and micro-turbulence can lead to dramatic increase in mass transfer, faster start-up and operative mixing and micro-mixing. Therefore, an improvement in the preconcentration efficiency of the method by decreasing the external and internal resistance of the mass transfer of the analyte is achieved. Introducing of magnetism to nano-adsorbents can provides a relatively rapid and easy procedure to separate them from aqueous phase by employing appropriate magnetic field. In addition to eliminating the centrifuge stage, deposition of polymer on these nanoparticles leads to an increase in surface area and ease of access to active polymer sites which can significantly improve the kinetic of metal absorption. In pickering emulsion polymerization method, solid colloidal particles act as stabilizers between two immiscible phases to form an emulsion and it is used to prepare of controlled size and stable nano-absorbent. In order to stabilize pickering emulsion polymerization in MIIP formulation, suitable stabilizers should be used. Chitosan with some unique properties such as biocompatibility, biodegradability and non-toxicity can be a good candidate for this purpose. Furthermore this biopolymer adsorbs heavy metals by chemisorption because of its amino and hydroxyl functional groups. In second step, the nanoparticles and polymers were characterized. The analytical parameters such were selected and optimozed by Plackett–Burman and Box–Behnken designs respectively. Linear dynamic range, detection limit and relative standard deviation were 0.01-85.000 µg.L-l, 0.003 µg.L-l, and 3.21%, respectively. The proposed preconcentration procedure was successfully applied to the determination of arsenic ion in a wide range of food samples with different and complex matrixes.
DOI: 10.17632/7c3dcj7spw
title: Cohesion and Initial Porosity of Granular Fault Gouges

description: This data set was used for the paper: "Cohesion and Initial Porosity of Granular Fault Gouges control the Breakdown Energy and the Friction Law at the Onset of Sliding" from N. Casas *, G. Mollon, and A. Daouadji submitted for publication in Jour. Geoph. Res.: Solid Earth. It contains the two softwares used Packing2D (for sample generation) and MELODY2D (for direct shear experiments) (but part of the code contains matlab files, so Matlab is also needed to run experiments, or at least sample generation and preprocessing step). This repository also contains initial files to run every experiments (no matlab needed) and some dataset obained (displacement, forces, energies...)
DOI: 10.17632/9gsp333f8d
title: Data for: ABBABB or 1212: Abstract language facilitates children’s early patterning skills

description: This file contains the raw data for the Pattern Labels research experiment reported in manuscript titled, "ABBABB or 1212: Abstract language facilitates children’s early patterning skills." July 2019.
DOI: 10.17632/p3mtb522hw
title: Implementing an antibiogram profile in an urban hospital in The Gambia 

description: Cumulative antibiogram data is necessary in supporting hospital-based empirical antimicrobial treatment for rationale prescribing. This study is the first known local antibiogram coordinated by multiple stakeholders across various disciplines and a great example of North-South collaboration that has harness technical support to improve techniques required to combat AMR and improve IPC in a Low and Middle-Income Country (LMIC). Three years of data from all samples sent to the Clinical Microbiology Laboratory in the Medical Research Council Unit were reviewed to aid in empiric antibiotic therapy and improve patient care
DOI: 10.17632/rhfwf2rycs
title: Adaptations to cationic biocide exposure differentially influences virulence factors and pathogenicity in Pseudomonas aeruginosa

description: Supplementary data.
DOI: 10.17632/26dvw2pv9x
title: Hot Filament Chemical Vapor Deposition of Crystalline Boron Films. Scanning Electron Micrographs.

description: Collection of SEM micrographs showing teh morphology of boron films produced by the Hot Filament Chemical Vapor Deposition Method.
DOI: 10.17632/f9fb3yw3jg
title: Data for: Quantitative validation of sediment trap attached to bottom fishing trawl for Polychaete sampling.

description: Total composition of the Brava Beach macrofauna, number of individuals per taxon (Taxa) using samplers with small (S), medium (M) and large (L) apertures and a cylindrical trap attached to a trawl (CIL). Note: The values shown in this table are not normalized.
DOI: 10.17632/8vbg43mskr
title: Mendeley Supplemental Figure 1

description: Patient with oral involvement of morphea depicting sequelae of lesions, including asymmetric atrophic changes; A) Hypopigmented, atrophic plaque present on right upper gums causing gingival destruction B) Asymmetrical extension of lower mucosal lip due to sclerotic morphea lesions (not shown)
DOI: 10.17632/wczdpy85k3
title: Data_Making the most of life

description: Early experiences could enhance an individual’s potential to make the most of future opportunities by promoting exploration, learning ability and spatial skills. These traits would help laying hens adapt when transferred to adult laying facilities, especially complex aviary systems. The aims of this study were (1) to determine if access to multiple litter and perch types during rearing would promote use of novel space and resources in the long term, and (2) to investigate the importance of age, and so timing during development, when increased environmental choices are made available. Laying hen chicks were kept in either a “Single-choice” (one litter and perch type) or a “Multi-choice” environment (four litter and perch types) during “Early” (day 1-week 4) and “Late” rearing (week 5-15). The environments were switched in half of the 16 pens at week 5, resulting in a 2 x 2 factorial design with four treatment combinations. At week 16, all groups were moved to standard pens in a laying house. Birds ability to take opportunities were evaluated by measuring laying hen responses to different sources of novelty around relevant resources that they are likely to encounter under commercial conditions at relevant ages; tests involving novel feed, novel pen, nests, novel litter materials and novel outdoor range. Effects of the Early rearing environment and Late rearing environment were investigated in a multi-model, allowing to pick up effects due to one of the periods along with the interaction, i.e. the full rearing environment. The results arisen from this data support the hypothesis that access to environments that offer multiple choice during the rearing period improves hens’ ability to make the most of new opportunities by being quicker to explore and exploit novel resources and rewards, although these outcomes are affected by the timing when environmental choice is available. As a conclusion, environmental choice should be provided during the whole rearing period in order to better prepare birds for future opportunities. 

The folder includes the full data sets with the behavioural responses of laying hens in the different opportunity tests, along with the R-codes used for the statistical analysis.
DOI: 10.6084/m9.figshare.22250581.v1
title: Dataset for Immune engineered extracellular vesicles to modulate T cell activation in the context of type 1 diabetes

description: Source data for figures published in "Immune engineered extracellular vesicles to modulate T cell activation in the context of type 1 diabetes" doi: 10.1101/2022.11.23.517693 <br>
DOI: 10.17632/4tgzfd2z59
title: Data for: Information seeking mechanism of neural populations in the lateral prefrontal cortex
DOI: 10.17632/95nbzr2rst
title: Data on Systemic inflammation markers of stage IA lung adenocarcinoma in Zhoushan Hospital(2012-2018).

description: Data on Systemic inflammation markers of stage IA lung adenocarcinoma in Zhoushan Hospital(2012-2018).
DOI: 10.6084/m9.figshare.22364080.v1
title: Data extraction forms.xlsx

description: Data extraction forms
DOI: 10.17632/w8y95npv35
title: Matlab code for Effects of Higher Education Subsidy

description: It contains the matlab code for "Effects of Higher Education Subsidies on Equity and Efficiency across Developmental Stages," forthcoming economic modelling
DOI: 10.17632/2wbptg7vyn
title: FAAH, SLC6A4, and BDNF variants are not associated with psychosocial stress and mental health outcomes in a population of Syrian refugee youth

description: The developmental origins of health and disease (DOHaD) hypothesis posits that early childhood stressors disproportionately impact adult health. Numerous studies have found adult mental health to be associated with childhood adversities and genetic variants, particularly in genes related to neurochemistry. However, few studies have examined the way interactive effects may manifest over time and fewer still include protective factors, like resilience. Our group has previously found associations between the monoamine oxidase A gene, MAOA, and a contextually-specific measure of resilience with a measure of perceived psychosocial stress over time in Syrian refugee youth. In this study, we work with the same sample of adolescents to test genetic variants in three additional candidate genes (FAAH, the 5-HTTLPR region of SLC6A4, and BDNF) for associations with six psychosocial stress and mental health outcomes. Using multi-level modeling, we find no association between variants in these candidate genes and psychosocial stress or mental health outcomes. Our analysis included tests for both direct genetic effects and interactions with lifetime trauma and resilience. Negative results, such as the lack of genetic associations with outcome measures, provides a more complete framework in which to better understand positive results and associations.
DOI: 10.17632/7fbv46wsnv
title: An experimental approach in analyzing the cell cycle dynamics of food-entrapping cells of sponges: Halisarca

description: Data stored here support the conclusions presented in the publication "An experimental approach in analyzing the cell cycle dynamics of food-entrapping cells of sponges". Halisarca dujardinii (class Demospongiae) possesses two types of proliferating cells with food-entrapping cells - choanocytes - serving as the main proliferative population of cells. The second (and less proliferative) cell population is represented by amoeboid mesohyl cells commonly called archaeocytes. Using various experimental techniques, we revealed that choanoderm of H. dujardinii harbours large population of clowly cycling choanocytes.
CLSM Z-stacks are stored in .ims format, represented by the original image as well as spots used to count nuclei/EdU-positive nuclei.
Folder "EdU accumulation" contains CLSM Z-stacks of sponges treated with EdU for 2 h and 6 h ("Cell cycle dynamics" experiment). Tissues are stained with DAPI (channel 1; cell nuclei), anti-acetylated alpha-tubulin antibodies (channel 2; choanocyte flagella); Sulfo-Cy3 azide + EdU (channel 3; S-phase nuclei).
Folder "Growth fraction" contains CLSM Z-stacks of sponges treated with 1 mkg/ml of aphidicolin for 4.5 days followed by 12 h of EdU incubation ("Estimating the growth fraction" experiment). Tissues are stained with DAPI (channel 1; cell nuclei), anti-acetylated alpha-tubulin antibodies (channel 2; choanocyte flagella); Sulfo-Cy3 azide + EdU (channel 3; S-phase nuclei).
Folder "G2-M analysis (colocalization study)" contains CLSM Z-stacks of sponges after EdU treatment of different length ("G2/M-phase analysis" experiment). Tissues are stained with DAPI (channel 1; cell nuclei), anti-acetylated alpha-tubulin antibodies (channel 2; choanocyte flagella); Sulfo-Cy3 azide + EdU (channel 3; S-phase nuclei); anti-Ser10-phosphorylated histone 3 antibodies (channel 4; M-phase nuclei).
Folder "Proliferating cell types" contains CLSM Z-stacks of sponges after CellTracker incubation and 12 hours of EdU treatment ("Identifying proliferating cell types" experiment). Tissues are stained with DAPI (channel 1; cell nuclei), anti-acetylated alpha-tubulin antibodies (channel 2; choanocyte flagella); Sulfo-Cy3 azide + EdU (channel 3; S-phase nuclei); CellTracker Deep Red (channel 4; cytoplasm).
Folder "Flow cytometry data" contains raw .csv data obtained during flow cytometry analysis of DNA content in single-cell suspensions after ACME dissocitation of intact tissues. Suspensions are stained by Propidium Iodide (PE-A channel).
DOI: 10.17632/m37ktzyfn6
title: RHI during parabolic flight and water immersion

description: In these folders, you can find the raw data of the Parabolic flight, Swimming pool, and Control experiments. Furthermore, the complete acceleration data log of a whole parabolic flight is reported.
DOI: 10.17632/rxcb88ybkh
title: Fecal microbiota transplantation protects renal ischemia reperfusion injury through propanoic acid

description: Original western blot images
DOI: 10.17632/ftnvtk6s4z
title: Comparison between ionomeric sealants and resin sealants in the pediatric dentistry area of the Dr. René Puig Bentz Dental Clinic of the Pedro Henríquez Ureña National University.

description: Pit and fissure sealants are essential materials used to prevent the accumulation of bacteria on the occlusal surfaces of posterior teeth.
The accumulation of bacteria on the occlusal surfaces of posterior teeth prevents the formation of acids and therefore their role is to fill the pits and fissures in a preventive manner and they are mainly used in the paediatric area of dentistry. The objective of this research was to compare the significant efficiency of ionomer sealants and resin sealants in the paediatric dentistry area of the Dr. Rene Puig Bentz Dental Clinic of the Pedro Henríquez Ureña National University. To achieve this objective, a sample of 50 teeth was analysed, divided into two groups: group A with the resin-based sealant and group B with the ionomer-based sealant, where the retention and setting times of both sealants were evaluated. The results obtained showed that immediate retention was 100.0% for both resin-based and ionomer sealants, with no cases of partial retention. In terms of placement time, the mean placement time for the resin sealants was 3.54 minutes, the mean placement time for the resin sealants was 3.54 minutes, and the mean placement time for the ionomer sealants was 3.54 minutes. The mean placement time for ionomer sealants was 6.71 minutes. The resin sealants were found to provide a good seal in 95.8% of cases and a partial seal in 4.2% of cases during the first month. The same results were obtained for the ionomer sealant. In terms of post-operative control, 100% of cases with resin sealants remained at 2 months, while 79.2% of cases with ionomer sealants remained at 2 months and 20.8% at 1 month. Fisher's exact test showed a p-value of 0.049645, indicating a significant association between sealant type and durability. On the basis of the results obtained, it was concluded that the ionomer sealants in the controls did not show greater durability, shorter placement time and less immediate disadaptation than the resin sealants.
DOI: 10.17632/m82vhzkkbd
title: Data for: A new reverse transcription-insulated isothermal polymerase chain reaction (RT-iiPCR) assay for DHAV-3 detection based on the POCKIT™ system

description: These documents contain some important dates about the development and evaluation of this RT-iiPCR of DHAV-3. And we listed as follows: Fig 1 The linear relation of every dilution detected by rRT-PCR. Table 1 Reference strains and isolates used in this study for specificity testing of RT-iiPCR. Table 2 Primer information rRT-PCR assay. Table 3 Evaluation of the sensitivity of the rRT-PCR and RT-iiPCR assays to DHAV-3. Table 4 Performance evaluations of the PetNADTM and TRizol RNA extraction methods for the detection of DHAV-3 by rRT-PCR and RT-iiPCR, respectively. Table 5 The Contingency table for analysis of the level of agreement between the rRT-PCR and the RT-iiPCR assays for the detection of DHAV-3 in liver samples.
DOI: 10.17632/r77r5c99sc
title: Transcriptomic analysis of immune-related genes in Pacific white snook (Centropomus viridis) gills infected with the monogenean parasite Rhabdosynochus viridisi

description: Transcriptomic data of Pacific white snook (Centropomus viridis) gills infected with the monogenean parasite Rhabdosynochus viridisi
DOI: 10.17632/tpcjs62wyk
title: Data for Great Resignation Paper

description: Data for Great Resignation paper.
DOI: 10.17632/2j69fzgcf2
title: Earwig × Fruit fly × Parasitoid: Interactions

description: The earwig Euborellia annulipes (Dermaptera: Anisolabididae) is a generalist predator. It was recently observed in fruits infested with fruit flies, whose juveniles are frequently attacked by parasitoid wasps. However, the predation of these fruit flies by E. annulipes has not yet been recorded nor has their intraguild interaction with parasitoid wasps. In this study, we explored earwig-fruit fly-parasitoid interactions using the E. annulipes earwig, the Mediterranean fly Ceratitis capitata (Diptera: Tephritidae), and the parasitoid wasp Diachasmimorpha longicaudata (Hymenoptera: Braconidae). We hypothesized that (1) earwig adults prey on fruit fly larvae and pupae, and this predation depends on the earwig sex and prey density and developmental stage; (2) earwigs are able to recognize and avoid parasitized prey; and (3) chemical markings on the host left by the parasitoid are recognized by the earwigs. In laboratory experiments, earwig females and males preyed on second and third-instar larvae and pupae of C. capitata, and females predated more than males regardless of the stage of development of the prey. Predation was higher in second-instar larvae, followed by third-instar larvae and, finally, fruit fly pupae. Females and males exhibited a type II functional response. Males killed but did not consume their prey more than females, effectively contributing to the elimination of prey even when they were not consumed. In no-choice tests, parasitized and nonparasitized fruit fly larvae were consumed by adult female earwigs in similar proportions. However, in choice tests, the female earwigs avoided feeding on parasitized larvae. Subsequent tests indicated that the parasitized larvae were recognized by semiochemicals released by the parasitoids during parasitism of the larvae. This result indicates that this earwig has the ability to identify parasitized prey and prefers to avoid intraguild predation. These findings are unprecedented and indicate that E. annulipes has the potential for biological control of C. capitata and that by avoiding intraguild predation, this earwig will have an additive effect on pest mortality.
DOI: 10.17632/3hdfr3y2wv
title: Data for: The influence of lattice vibrations and electronic free energy on the phase stability of titanium silicides and Si solubility in hcp titanium: A DFT study

description: Supplementary materials which help to reproduce figures in the article using any plotting software.
DOI: 10.17632/j9kbn2d6ky
title: Kinetic, Spectroscopic and DFT studies of novel oxidation of Acetylsalicylic acid by NaIO4 using micro-amount of Os(VIII) as a homogeneous catalyst in alkaline medium

description: These data belongs to UV and FT-IR analysis of Acetyl salicylic acid
DOI: 10.17632/3f44n8wxn5
title: Data for: A novel approach for the quantification of triple-shape memory behavior of polymers
DOI: 10.15468/dl.ckq43d
title: Occurrence Download

description: A dataset containing 232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Cyrtochilum meirax (Rchb.f.) Dalström"
 ]
}

 The dataset includes 232 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001447-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/84jb9r86zr
title: Development of Specific Growth Chart for Children with Fanconi Anemia

description: Fanconi anemia (FA) is often associated with poor growth due to a combination of endocrine and non-endocrine causes. There are currently no disease-specific growth curves. Despite short stature being regarded as a major characteristic of FA (Auerbach, 2009), there is currently no established method of accurately monitoring growth expectations for individuals with this condition. Use of bone age to estimate adult height is viewed as falsely inflating projected growth outcomes in FA as this assumes normal hormone production, nutrition, and puberty onset, which are not seen in FA (Petryk et al., 2015). Hormone response and duration of puberty may also be abnormal in individuals with FA. Midparental target height is frequently not appropriate for setting expected growth in patients with FA (Petryk et al., 2015). As such, we aimed to create disease-specific growth curves using a cohort of individuals with FA seeking care at the University of Minnesota.

The Bone Marrow Transplant (BMT) Registry at the University of Minnesota was used to find a large cohort of patients with FA seen at the Fanconi Anemia Comprehensive Care Center at the University of Minnesota since its inception in 1968. Age, sex, height, and weight data from birth until age 20 years old were abstracted from electronic health records (EHR) beginning in spring of 2011 when EPIC was instituted as the EHR at the FA Comprehensive Care Center. Additional data were abstracted including results of FANC gene variant testing and treatment data such as BMT status. Data was collected in a REDCap database housed by the University of Minnesota. 

Patient growth trajectories were visualized by plotting, longitudinal anthropometric data for height, weight, and BMI serially by clinic visits for age (i.e., spaghetti plots). Prior to statistical modeling, all de-identified patient data were screened for data quality issues such as: same-day anthropometric measurements, duplicate measurements, last measurement carried-forward using a pediatric growth cleaner statistical tool (Daymont et al., 2017). The Lambda-Mu-Sigma (LMS) growth modeling technique was then used to fit height-for-age, weight-for-age, and BMI-for-age growth functions from which reference percentile ranges for children with FA were estimated. The LMS modeling technique is from the Generalized Additive Model for Location Scale and Shape (GAMLSS) family of statistical approaches (Rigby & Stasinopoulos, 2004). It is a modeling methodology based on penalized maximum likelihood estimation with cubic splines to smooth for roughness in age-related growth channels to calculate percentiles (Cole & Green, 1992). Extensive statistical and visual diagnostics GAMLSS tools were used in select our final models.

To compare growth differences, the FA-specific percentiles charts were then overlaid on WHO standards for ages 0-2 years old and CDC references for ages 2-20 years old.