cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.15042633.v1
title: Depleted Database Annotation Results

description: Annotation of 34 NCBI GenBank/RefSeq genomes using depleted databases for the preprint "The high-throughput gene prediction of more than 1,700 eukaryote genomes using the software package EukMetaSanity" by Neely, Hu, Alexander, and Tully, 2021<br>Extract files with the command:<br>tar -xzvf eukmetasanity.20210722.Depleted.tar.gz
DOI: 10.6084/m9.figshare.15040554
title: NCBI Annotation Results

description: Annotation of 112 NCBI GenBank/RefSeq genomes for the preprint "The high-throughput gene prediction of more than 1,700 eukaryote genomes using the software package EukMetaSanity" by Neely, Hu, Alexander, and Tully, 2021<br><br><br>Extract files with the command:<br>cat eukmetasanity.20210722.NCBI.parta* | tar -xzvf -<br>
DOI: 10.6084/m9.figshare.15040554.v2
title: NCBI Annotation Results

description: Annotation of 112 NCBI GenBank/RefSeq genomes for the preprint "The high-throughput gene prediction of more than 1,700 eukaryote genomes using the software package EukMetaSanity" by Neely, Hu, Alexander, and Tully, 2021<br><br><br>Extract files with the command:<br>cat eukmetasanity.20210722.NCBI.parta* | tar -xzvf -<br>
DOI: 10.6084/m9.figshare.15040554.v1
title: NCBI Annotation Results

description: Annotation of 112 NCBI GenBank/RefSeq genomes for the preprint "The high-throughput gene prediction of more than 1,700 eukaryote genomes using the software package EukMetaSanity" by Neely, Hu, Alexander, and Tully, 2021<br><br><br>Extract files with the command:<br>cat eukmetasanity.20210722.NCBI.parta* | tar -xzvf -<br>
DOI: 10.34810/data72/1246
title: 01AC_1.MR.0004.0183.2013.03.10.14.06.27.296875.165386641.IMA
DOI: 10.34622/datarepositorium/si73df/8ar2cx
title: CD4_counts_table_S2.tab

description: CSV file containing the CD4+ T cell count values (trajectories) of each patient and the corresponding patient cluster.
DOI: 10.34622/datarepositorium/si73df/xzs3px
title: Table_S3_S4.tab

description: Excel file containing data from 33 HIV-infected patients, including age at baseline (start of the antiretroviral therapy), viral load, CD4 counts, sjTRECs, sj/beta TREC ratio and CD31+ CD4 T cells.
DOI: 10.6084/m9.figshare.15042636
title: Alexander et al. (2021) Annotation Results

description: Annotation of 987 MAGS from Alexander et al. (2021) for the preprint "The high-throughput gene prediction of more than 1,700 eukaryote genomes using the software package EukMetaSanity" by Neely, Hu, Alexander, and Tully, 2021<br><br><br>Extract files with the command:<br>cat eukmetasanity.20210722.Alexander.parta* | tar -xzvf -
DOI: 10.34810/data72/1247
title: 01AC_1.MR.0004.0199.2013.03.10.14.06.27.296875.165386929.IMA
DOI: 10.18739/a2vt1gq94
title: Dynamic Observations of the Densification of Greenland Firn under Compression using a microcomputed X-ray tomography, June 2017

description: The present dataset includes 2-Dimensional (2-D) micro computed tomography (CT) reconstructions obtained from depths of 10-80 meters (m) firn from Summit, Greenland using the micro CT in 2017; comparison before the strain with after the strain of 4% from reconstructed 3-Dimensional (3-D) images (horizontal cross section) from the micro CT for 30 m firn specimen; stress as a function of strain for depths of 10-80 m during interrupted compressive tests; plots of density, the area-equivalent circle diameter (ECDa – a measure of the feature pore-size), the structure thickness (S.Th - a measure of the feature grain-size), total porosity, closed porosity, the specific surface area (SSA) and the structure model index (SMI - a measure of the prevalent ice curvature) respectively as a function of strain for depths of 10-80 m; grain size obtained using the micro CT as a function of depth or strain; SMI evolution with depth for before the test for depths of 10-80 m; 2-D reconstructions obtained using the micro CT 0% strain to 4% strain for the 30 m specimen; semi-empirical model for the lattice diffusion and the grain boundary diffusion, and the mean relationship between the density and stress for all tests; comparison of the density calculated from micro CT data with density obtained from measurement of the mass-volume method at each depth; the fitted linear slope of each microstructural parameter with increasing strain for depths of 10-80 m; the fitted mean density and the fraction of lattice diffusion α evaluated using the semi-empirical model under the corresponding stresses. We share this dataset with other glaciologists, material scientists, experimental geophysicists, and all other researchers and engineers in order to improve our understanding on the scientific issue of snow, firn and ice.
DOI: 10.34810/data72/1248
title: 01AC_1.MR.0004.0113.2013.03.10.14.06.27.296875.165385374.IMA
DOI: 10.34810/data72/1249
title: 01AC_1.MR.0004.0066.2013.03.10.14.06.27.296875.165384528.IMA
DOI: 10.5281/zenodo.5131282
title: Supplementary Data and Scripts for the Paper "Synchronous Development in Open-Source Projects: A Higher-Level Perspective"

description: Anonymized data and scripts used to produce the results of the paper "Synchronous Development in Open-Source Projects: A Higher-Level Perspective".
DOI: 10.5281/zenodo.5131281
title: Supplementary Data and Scripts for the Paper "Synchronous Development in Open-Source Projects: A Higher-Level Perspective"

description: Anonymized data and scripts used to produce the results of the paper "Synchronous Development in Open-Source Projects: A Higher-Level Perspective".
DOI: 10.3886/e112588v1-92460
title: Replication data for: The 'Out of Africa' Hypothesis, Human Genetic Diversity, and Comparative Economic Development

description: This research advances and empirically establishes the hypothesis that, in the course of the prehistoric exodus of Homo sapiens out of Africa, variation in migratory distance to various settlements across the globe affected genetic diversity and has had a persistent hump-shaped effect on comparative economic development, reflecting the trade-off between the beneficial and the detrimental effects of diversity on productivity. While the low diversity of Native American populations and the high diversity of African populations have been detrimental for the development of these regions, the intermediate levels of diversity associated with European and Asian populations have been conducive for development. (JEL N10, N30, N50, O10, O50, Z10)
DOI: 10.34810/data72/1250
title: 01AC_1.MR.0004.0003.2013.03.10.14.06.27.296875.165383394.IMA
DOI: 10.5281/zenodo.5131290
title: CoVaxxy Tweet IDs data set

description: A collection of Tweet IDs related to Covid-19 Vaccines, gathered from Twitter since Jan 4, 2021. Please see https://arxiv.org/abs/2101.07694 for more information.
DOI: 10.34810/data72/1251
title: 01AC_1.MR.0004.0225.2013.03.10.14.06.27.296875.165387397.IMA
DOI: 10.6084/m9.figshare.15047247
title: 2021 electron-only simulation data

description: In the data files, 'ax', 'ay', 'az' mean vector potential A_x, A_y, A_z; 'bx', 'by', 'bz' mean magnetic field B_x, B_y, B_z; 'ex', 'ey', 'ez' mean electric field E_x, E_y, E_z; 'jx', 'jy', 'jz' mean current density j_x, j_y, j_z; 'uix', 'uiy', 'uiz' mean ion flow velocity V_ix, V_iy, V_iz; 'uex', 'uey', 'uez' mean electron flow velocity V_ex, V_ey, V_ez; 'dde' means electron density; 'ddi' means ion density; 'pixx', 'piyy', 'pizz' mean ion pressure tensor components P_ixx, P_iyy, P_izz; 'pexx', 'peyy', 'pezz' mean electron pressure tensor components P_exx, P_eyy, P_ezz; the numbers in the file names divided by 4000 are the corresponding time in units of Omega_i^-1. The data format is 2048*1024f15.7 and 4096*1024f15.7 in Cases 1 and 2, respectively.
DOI: 10.6084/m9.figshare.15047247.v1
title: 2021 electron-only simulation data

description: In the data files, 'ax', 'ay', 'az' mean vector potential A_x, A_y, A_z; 'bx', 'by', 'bz' mean magnetic field B_x, B_y, B_z; 'ex', 'ey', 'ez' mean electric field E_x, E_y, E_z; 'jx', 'jy', 'jz' mean current density j_x, j_y, j_z; 'uix', 'uiy', 'uiz' mean ion flow velocity V_ix, V_iy, V_iz; 'uex', 'uey', 'uez' mean electron flow velocity V_ex, V_ey, V_ez; 'dde' means electron density; 'ddi' means ion density; 'pixx', 'piyy', 'pizz' mean ion pressure tensor components P_ixx, P_iyy, P_izz; 'pexx', 'peyy', 'pezz' mean electron pressure tensor components P_exx, P_eyy, P_ezz; the numbers in the file names divided by 4000 are the corresponding time in units of Omega_i^-1. The data format is 2048*1024f15.7 and 4096*1024f15.7 in Cases 1 and 2, respectively.
DOI: 10.5281/zenodo.5121590
title: Data and codes from: Oscillatory Codes for Memory and Perception in the Prefrontal Cortex

description: These datasets and codes were used for analysis in a manuscript titled "Oscillatory Codes for Memory and Perception in the Prefrontal Cortex." For more details on the experimental and analysis methods, please refer to that manuscript. The raw data was obtained by recording signals from a 64-channel ECoG array implanted on the PFC of monkeys performing a behavioral task using custom software (NS computer service, Japan) running on LabVIEW Real-Time (National Instruments, TX, USA). The recorded raw data were converted into time-series data of power in six frequency bands using FieldTrip. The total file size of all the raw data is over 50GB, so it is not included here. It is available upon request.
DOI: 10.5281/zenodo.5121589
title: Data and codes from: Oscillatory Codes for Memory and Perception in the Prefrontal Cortex

description: These datasets and codes were used for analysis in a manuscript titled "Oscillatory Codes for Memory and Perception in the Prefrontal Cortex." For more details on the experimental and analysis methods, please refer to that manuscript. The raw data was obtained by recording signals from a 64-channel ECoG array implanted on the PFC of monkeys performing a behavioral task using custom software (NS computer service, Japan) running on LabVIEW Real-Time (National Instruments, TX, USA). The recorded raw data were converted into time-series data of power in six frequency bands using FieldTrip. The total file size of all the raw data is over 50GB, so it is not included here. It is available upon request.
DOI: 10.34810/data72/1252
title: 01AC_1.MR.0004.0193.2013.03.10.14.06.27.296875.165386821.IMA
DOI: 10.34810/data72/1253
title: 01AC_1.MR.0004.0046.2013.03.10.14.06.27.296875.165384168.IMA
DOI: 10.34810/data72/1254
title: 01AC_1.MR.0004.0164.2013.03.10.14.06.27.296875.165386299.IMA
DOI: 10.34810/data72/1140
title: 01AC_1.MR.0004.0237.2013.03.10.14.06.27.296875.165387613.IMA
DOI: 10.34810/data72/1255
title: 01AC_1.MR.0004.0138.2013.03.10.14.06.27.296875.165385831.IMA
DOI: 10.15468/pg78h3
title: A new cryptic species of the Pristimantis lacrimosus group (Anura, Strabomantidae) from the eastern slopes of the Ecuadorian Andes

description: This dataset contains the digitized treatments in Plazi based on the original journal article Carrion-Olmedo, Julio C., Ron, Santiago R. (2021): A new cryptic species of the Pristimantis lacrimosus group (Anura, Strabomantidae) from the eastern slopes of the Ecuadorian Andes. Evolutionary Systematics 5: 151-175, DOI: http://dx.doi.org/10.3897/evolsyst.5.62661, URL: http://dx.doi.org/10.3897/evolsyst.5.62661
DOI: 10.15468/jm2ggj
title: A new species of Micryletta Dubois, 1987 (Anura, Microhylidae) from Yunnan Province, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Liu, Shuo, Hou, Mian, Mo, Mingzhong, Rao, Dingqi (2021): A new species of Micryletta Dubois, 1987 (Anura, Microhylidae) from Yunnan Province, China. Herpetozoa 34: 131-140, DOI: http://dx.doi.org/10.3897/herpetozoa.32.e69755, URL: http://dx.doi.org/10.3897/herpetozoa.32.e69755
DOI: 10.15468/fukdut
title: Notes on the genus Theopropus Saussure (Mantodea, Hymenopodidae) from China, with description of a new species from the Himalayas

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wu, Chao, Liu, Chun-Xiang (2021): Notes on the genus Theopropus Saussure (Mantodea, Hymenopodidae) from China, with description of a new species from the Himalayas. ZooKeys 1049: 163-182, DOI: http://dx.doi.org/10.3897/zookeys.1049.65295, URL: http://dx.doi.org/10.3897/zookeys.1049.65295
DOI: 10.6084/m9.figshare.9876386.v2
title: Canadian Candy Sales

description: Data from StatsCan.
DOI: 10.6073/pasta/72599e943165681c6046d84f081f1e53
title: Forest-wide bird survey at 183 sample sites the Andrews Experimental Forest from 2009-2019 (Reformatted to the ecocomDP Design Pattern)

description: This data package is formatted as an ecocomDP (Ecological Community Data Pattern). For more information on ecocomDP see https://github.com/EDIorg/ecocomDP. This Level 1 data package was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-and/4781/3. The abstract below was extracted from the Level 0 data package and is included for context: Bird occurrence data collected at 183 sample locations within the H. J. Andrews Experimental Forest (HJA) from 2009-present. We used a stratified, systematic, random design to select sample locations. We stratified across elevation, distance to road, and habitat type (plantation or mature/old-growth forest). We conduct point counts on six separate occasions from May – July, which corresponded to spring arrival and subsequent breeding period for the majority of bird species at HJA. Surveys occur between 05:15h and 10:30h and each consists of a 10-min point count where we record all birds seen or heard. The species of all birds seen and heard are recorded as well as all individual squirrels, chipmunks and pikas seen and heard. Survey-level information is also collected at each point count and includes: weather and wind conditions, stream noise, snow cover on the ground, phenology of vine maple and rhododendron. Data collection is ongoing. The H.J. Andrews Experimental Forest is a living laboratory that provides unparalleled opportunities for the study of forest and stream ecosystems in the central Cascade Range of Oregon. Since 1980, as a part of the National Science Foundation Long Term Ecological Research (NSF-LTER) program, the Andrews Experimental Forest has become a leader in the analysis of forest and stream ecosystem dynamics. Long-term field experiments and measurement programs have focused on climate dynamics, streamflow, water quality, and vegetation succession. Currently researchers are working to develop concepts and tools needed to predict effects of natural disturbance, land use, and climate change on ecosystem structure, function, and species composition. The Andrews Experimental Forest is administered cooperatively by the USDA Forest Service Pacific Northwest Research Station, Oregon State University and the Willamette National Forest. Funding for the research program comes from the National Science Foundation (NSF), US Forest Service Pacific Northwest Research Station, Oregon State University, and other sources.
DOI: 10.34810/data72/1256
title: 01AC_1.MR.0004.0060.2013.03.10.14.06.27.296875.165384420.IMA
DOI: 10.6084/m9.figshare.9876380
title: USA Halloween spending data

description: Data from webs scrape from National Confectionery.
DOI: 10.6084/m9.figshare.9876380.v1
title: USA Halloween spending data

description: Data from webs scrape from National Confectionery.
DOI: 10.6084/m9.figshare.15047379.v1
title: Human population density data

description: Human population data from UN
DOI: 10.6084/m9.figshare.15047379
title: Human population density data

description: Human population data from UN
DOI: 10.34810/data72/1257
title: 01AC_1.MR.0004.0155.2013.03.10.14.06.27.296875.165386137.IMA
DOI: 10.34810/data72/1258
title: 01AC_1.MR.0004.0207.2013.03.10.14.06.27.296875.165387073.IMA
DOI: 10.34810/data72/443
title: 01AC_1.MR.0004.0133.2013.03.10.14.06.27.296875.165385741.IMA
DOI: 10.6073/pasta/4a7c3b106b0863334452a27fbe76d411
title: Forest-wide bird survey at 183 sample sites the Andrews Experimental Forest from 2009-2019 (Reformatted to a Darwin Core Archive)

description: This data package is formatted as a Darwin Core Archive (DwC-A, event core). For more information on Darwin Core see https://www.tdwg.org/standards/dwc/. This Level 2 data package was derived from the Level 1 data package found here: https://pasta.lternet.edu/package/metadata/eml/edi/359/2, which was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-and/4781/3. The abstract below was extracted from the Level 0 data package and is included for context: Bird occurrence data collected at 183 sample locations within the H. J. Andrews Experimental Forest (HJA) from 2009-present. We used a stratified, systematic, random design to select sample locations. We stratified across elevation, distance to road, and habitat type (plantation or mature/old-growth forest). We conduct point counts on six separate occasions from May – July, which corresponded to spring arrival and subsequent breeding period for the majority of bird species at HJA. Surveys occur between 05:15h and 10:30h and each consists of a 10-min point count where we record all birds seen or heard. The species of all birds seen and heard are recorded as well as all individual squirrels, chipmunks and pikas seen and heard. Survey-level information is also collected at each point count and includes: weather and wind conditions, stream noise, snow cover on the ground, phenology of vine maple and rhododendron. Data collection is ongoing. The H.J. Andrews Experimental Forest is a living laboratory that provides unparalleled opportunities for the study of forest and stream ecosystems in the central Cascade Range of Oregon. Since 1980, as a part of the National Science Foundation Long Term Ecological Research (NSF-LTER) program, the Andrews Experimental Forest has become a leader in the analysis of forest and stream ecosystem dynamics. Long-term field experiments and measurement programs have focused on climate dynamics, streamflow, water quality, and vegetation succession. Currently researchers are working to develop concepts and tools needed to predict effects of natural disturbance, land use, and climate change on ecosystem structure, function, and species composition. The Andrews Experimental Forest is administered cooperatively by the USDA Forest Service Pacific Northwest Research Station, Oregon State University and the Willamette National Forest. Funding for the research program comes from the National Science Foundation (NSF), US Forest Service Pacific Northwest Research Station, Oregon State University, and other sources.
DOI: 10.6084/m9.figshare.15042645
title: Delmont et al. (2020) Annotation Results

description: Annotation of 682 MAGS from Delmont et al. (2020) for the preprint "The high-throughput gene prediction of more than 1,700 eukaryote genomes using the software package EukMetaSanity" by Neely, Hu, Alexander, and Tully, 2021<br><br>Extract files with the command:<br>cat eukmetasanity.20210722.Delmont.parta* | tar -xzvf -
DOI: 10.6084/m9.figshare.14946009.v1
title: Traffic Condition Estimation and Data Quality Assessment for Signalized Road Networks using Massive Taxi Trajectories

description: Traffic Condition Estimation and Data Quality Assessment for Signalized Road Networks using Massive Taxi Trajectories
DOI: 10.6084/m9.figshare.14946009.v2
title: Traffic Condition Estimation and Data Quality Assessment for Signalized Road Networks using Massive Taxi Trajectories

description: Traffic Condition Estimation and Data Quality Assessment for Signalized Road Networks using Massive Taxi Trajectories
DOI: 10.6084/m9.figshare.14946009.v3
title: Traffic Condition Estimation and Data Quality Assessment for Signalized Road Networks using Massive Taxi Trajectories

description: Traffic Condition Estimation and Data Quality Assessment for Signalized Road Networks using Massive Taxi Trajectories
DOI: 10.5281/zenodo.5131389
title: Pulmonary fibrosis in a 79-year-old female patient

description: Female patient aged 79 years. Unfortunately, he died 2 (two) years after he was 81 years old, as a result of complications from acquired pulmonary fibrosis. The main cause was a fire as a child, as the patient was not a smoker. Her mother also died from the same disease.
DOI: 10.5281/zenodo.5131388
title: Pulmonary fibrosis in a 79-year-old female patient

description: Female patient aged 79 years. Unfortunately, he died 2 (two) years after he was 81 years old, as a result of complications from acquired pulmonary fibrosis. The main cause was a fire as a child, as the patient was not a smoker. Her mother also died from the same disease.
DOI: 10.6084/m9.figshare.15047475.v1
title: Additional file 3 of Mapping the molecular basis for growth related phenotypes in industrial producer CHO cell lines using differential proteomic analysis

description: Additional file 3. Differentially expressed proteins identified by LC-MS/MS analysis. Full list of differentially expressed proteins identified between high/low peak VCD and extended/normal VCD CDCLs at day 6 and 10 of culture (xls).
DOI: 10.6084/m9.figshare.15047529
title: Additional file 1 of Differential impacts of TNFα inhibitors on the transcriptome of Th cells

description: Additional file 1:. Table S1.
DOI: 10.6084/m9.figshare.15047529.v1
title: Additional file 1 of Differential impacts of TNFα inhibitors on the transcriptome of Th cells

description: Additional file 1:. Table S1.
DOI: 10.6084/m9.figshare.15047532
title: Additional file 2 of Differential impacts of TNFα inhibitors on the transcriptome of Th cells

description: Additional file 2:. Table S2.
DOI: 10.6084/m9.figshare.15047532.v1
title: Additional file 2 of Differential impacts of TNFα inhibitors on the transcriptome of Th cells

description: Additional file 2:. Table S2.
DOI: 10.6084/m9.figshare.15047535
title: Additional file 3 of Differential impacts of TNFα inhibitors on the transcriptome of Th cells

description: Additional file 3:. Table S3.
DOI: 10.6084/m9.figshare.15047535.v1
title: Additional file 3 of Differential impacts of TNFα inhibitors on the transcriptome of Th cells

description: Additional file 3:. Table S3.
DOI: 10.6084/m9.figshare.15047542
title: Additional file 1 of Plaque-associated human microglia accumulate lipid droplets in a chimeric model of Alzheimer’s disease

description: Additional file 1. Sc-RNAseq information table. Data pertaining to the Seurat analysis of the scRNA-seq data contained in Fig. 1. Tables include samples basics and Seurat analysis parameters, cluster barcodes, results of differential gene expression analysis for each cluster, pseudobulk analysis and the foam cell gene signature.
DOI: 10.6084/m9.figshare.15047542.v1
title: Additional file 1 of Plaque-associated human microglia accumulate lipid droplets in a chimeric model of Alzheimer’s disease

description: Additional file 1. Sc-RNAseq information table. Data pertaining to the Seurat analysis of the scRNA-seq data contained in Fig. 1. Tables include samples basics and Seurat analysis parameters, cluster barcodes, results of differential gene expression analysis for each cluster, pseudobulk analysis and the foam cell gene signature.
DOI: 10.6084/m9.figshare.15047641.v1
title: Additional file 1 of Comparative study on fruit development and oil synthesis in two cultivars of Camellia oleifera

description: Additional file 1. Climate conditions of July to October in 2019 in Changsha, Hunan, China.
DOI: 10.6084/m9.figshare.15047641
title: Additional file 1 of Comparative study on fruit development and oil synthesis in two cultivars of Camellia oleifera

description: Additional file 1. Climate conditions of July to October in 2019 in Changsha, Hunan, China.
DOI: 10.6084/m9.figshare.15047676
title: Additional file 2 of An exploratory assessment of the applicability of direct-to-consumer genetic testing to translational research in Japan

description: Additional file 2: Full list of the number of associated SNP of GRIN2B for 447 phenotypes.