cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fj454m
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-85.2097370999999981 42.3119881000000007, -85.2097370999999981 42.3126543200000000, -85.2097370999999981 42.3134038299999986, -85.2097370999999981 42.3140700499999980, -85.2097370999999981 42.3146946399999990, -85.2097370999999981 42.3152359400000009, -85.2097370999999981 42.3161520000000024, -85.2090688600000021 42.3161520000000024, -85.2084004799999946 42.3161520000000024, -85.2072308300000003 42.3161520000000024, -85.2061447199999975 42.3161520000000024, -85.2048080999999939 42.3161520000000024, -85.2048080999999939 42.3151110299999971, -85.2048080999999939 42.3143198799999993, -85.2048080999999939 42.3135703800000016, -85.2048080999999939 42.3129874400000006, -85.2048080999999939 42.3119881000000007, -85.2054763400000041 42.3119881000000007, -85.2063118100000025 42.3119881000000007, -85.2068966399999965 42.3119881000000007, -85.2077738800000049 42.3119881000000007, -85.2088599899999934 42.3119881000000007, -85.2097370999999981 42.3119881000000007))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098379-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112022558
title: Cuneiform Tablet 1913.14.1506, Spurlock 1913.14.1506

description: [Text Description:] Account concerning silver, barley, and refined bitumen ❧ [Text or Publication Number Note:] Spurlock 1913.14.1506; CDLI P421358 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/2) Light Brown (5YR 6.5/4) Dark Gray (N 3/ 6.6% R) ❧ [Physical Object Note:] 10.1 x 6.9 x 2.9 cm (213g)
DOI: 10.5281/zenodo.11237849
title: Impact of paclitaxel treatment on the Triple Negative Breast Cancer Cell line HCC1143

description: Data and code related to Zenodo repository: 10.5281/zenodo.11237850

 

Experimental goal:

Evaluate the impact of escalating paclitaxel dose on cell count, nuclear morphology and cellular outcome.

 

Methods:

Cells were plated at 3000 cells in 100ul of complete media per well in a 96 well plate (#08-772-225, FisherScientific). After 24 hours, an additional 100ul of either vehicle (0.1% DMSO) or paclitaxel containing complete media was added. After 72 hours cells were fixed with 4% Formaldehyde (#28908, ThermoFisher Scientific) for 15 minutes at room temperature, then permeabilized with 0.3% Triton X-100 (#X100-100ML, Sigma Aldrich) for 10 minutes at room temperature, then washed twice with PBS. Fixed cells were blocked with 1% BSA (A7906-100G, Millipore Sigma) in PBS for 1 hour at room temperature and then stained overnight with 1:100 anti-CDKN2A/p16INK4A+CDKN2B/p15INK4B-AF644 (#ab199756, Abcam), and 1:100 anti-cPARP-AF647 (#6987S, Cell Signaling Technology) or 1:500 anti-TUBB3-AF647 (#ab190575, Abcam) overnight at 4C. Each well was washed twice with room temp PBS then stained with 0.5ug/mL DAPI (4083S, Cell Signaling Technology) in PBS for 15 minutes at room temperature. Following DAPI staining, wells were washed once with PBS, then stained with 1:20,000 HCS CellMask in PBS (Orange: #H32713, Green: #H32714, Invitrogen) for 15 minutes at room temperature. Wells were washed twice with room temperature PBS and then 4 fields of view per well imaged on an InCell 6000 (GE Healthcare). Images were segmented with two custom Cellpose models to segment the nucleus (using parameters: diameter = 45, chan = DAPI, chan2 = Cellmask Orange) and cytoplasm (using parameters: diameter = 90, chan = Cellmask Orange, chan2 = DAPI). Image quantification was performed in R (v4.3.1) using EBImage (v4.42.0), and cells were annotated based on the number of distinct nuclei segmented within each cytoplasmic mask. 

 

Included files:

row_#_level_1.zip : 6 zip file containing original images from InCell 6000, one zip per row

level_2.csv : Data quantified to the nuclear level (cytoplasmic quantification is duplicates across multiplet nuclei)

level_3.csv: Data quantified at the cellular level including number of nuclei and stain intensities for segmented compartments

platemap.csv: Description of each well from the stained plate

cellpose_modelz.zip: Zip file containing the two CellPose models used for segmentation

image_quantification.rmd : R markdown file containing code for extracting and quantifying image intensities using the raw images (level_1) and segmentation masks created from cellpose.
DOI: 10.5281/zenodo.11237850
title: Impact of paclitaxel treatment on the Triple Negative Breast Cancer Cell line HCC1143

description: Data and code related to Zenodo repository: 10.5281/zenodo.11237850

 

Experimental goal:

Evaluate the impact of escalating paclitaxel dose on cell count, nuclear morphology and cellular outcome.

 

Methods:

Cells were plated at 3000 cells in 100ul of complete media per well in a 96 well plate (#08-772-225, FisherScientific). After 24 hours, an additional 100ul of either vehicle (0.1% DMSO) or paclitaxel containing complete media was added. After 72 hours cells were fixed with 4% Formaldehyde (#28908, ThermoFisher Scientific) for 15 minutes at room temperature, then permeabilized with 0.3% Triton X-100 (#X100-100ML, Sigma Aldrich) for 10 minutes at room temperature, then washed twice with PBS. Fixed cells were blocked with 1% BSA (A7906-100G, Millipore Sigma) in PBS for 1 hour at room temperature and then stained overnight with 1:100 anti-CDKN2A/p16INK4A+CDKN2B/p15INK4B-AF644 (#ab199756, Abcam), and 1:100 anti-cPARP-AF647 (#6987S, Cell Signaling Technology) or 1:500 anti-TUBB3-AF647 (#ab190575, Abcam) overnight at 4C. Each well was washed twice with room temp PBS then stained with 0.5ug/mL DAPI (4083S, Cell Signaling Technology) in PBS for 15 minutes at room temperature. Following DAPI staining, wells were washed once with PBS, then stained with 1:20,000 HCS CellMask in PBS (Orange: #H32713, Green: #H32714, Invitrogen) for 15 minutes at room temperature. Wells were washed twice with room temperature PBS and then 4 fields of view per well imaged on an InCell 6000 (GE Healthcare). Images were segmented with two custom Cellpose models to segment the nucleus (using parameters: diameter = 45, chan = DAPI, chan2 = Cellmask Orange) and cytoplasm (using parameters: diameter = 90, chan = Cellmask Orange, chan2 = DAPI). Image quantification was performed in R (v4.3.1) using EBImage (v4.42.0), and cells were annotated based on the number of distinct nuclei segmented within each cytoplasmic mask. 

 

Included files:

row_#_level_1.zip : 6 zip file containing original images from InCell 6000, one zip per row

level_2.csv : Data quantified to the nuclear level (cytoplasmic quantification is duplicates across multiplet nuclei)

level_3.csv: Data quantified at the cellular level including number of nuclei and stain intensities for segmented compartments

platemap.csv: Description of each well from the stained plate

cellpose_modelz.zip: Zip file containing the two CellPose models used for segmentation

image_quantification.rmd : R markdown file containing code for extracting and quantifying image intensities using the raw images (level_1) and segmentation masks created from cellpose.
DOI: 10.25549/inscriptifact-ouc112051964
title: Baal Myth Fifth Tablet

description: [Text Description:] Baal enters underworld, his body is discovered, El and Anat mourn him ❧ [Text or Publication Number Note:] KTU 1.5; CTA 5; CAT 1.5; KTU2 1.5; CTU 1.5; RS 2.[022]; RS 3.[565] ❧ [Excavation Description:] Excavations at Ras Shamra 1930. Found in Library of the High Priest, p. t. 210-264, Acropolis, excavated by Claude F.-A. Schaeffer, Mission Archeologique Francaise. ❧ [Medium:] Clay ❧ [Script Note:] Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet, 14.5 cm. X 15.6 cm., 6 fragments ❧ [Physical Object Note:] Grey clay, six columns, incomplete
DOI: 10.25549/inscriptifact-ouc112051568
title: P.Oxy.X 1326 Receipt for payment of wine., P.Oxy.X 1326

description: [Text Description:] Receipt for payment of wine, 10 lines. ❧ [Text or Publication Number Note:] P.Oxy.X 1326, P.Oxy. 1326, Spurlock 1914.21.0027 ❧ [Excavation Description:] Excavated by archaeologists, including Bernard Pyne Grenfell and Arthur Surridge Hunt, at an ancient rubbish dump near Oxyrhynchus in Egypt (28°32'N 30°40'E, modern el-Bahnasa). ❧ [Medium:] Papyrus ❧ [Script Note:] Greek ❧ [Physical Object Description:] Papyrus manuscript, 10.6 x 6.5 cm.
DOI: 10.15468/dl.dr3t3n
title: Occurrence Download

description: A dataset containing 2655276915 species occurrences available in GBIF matching the query:
{ }

 The dataset includes 2655276915 records from 64231 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041025-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tgadhz
title: Occurrence Download

description: A dataset containing 525 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Specimen, Occurrence evidence)",
 "Continent is Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is Pantala flavescens (Fabricius, 1798)"
 ]
}

 The dataset includes 525 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018155-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112051569
title: P.Oxy.X 1326 Receipt for payment of wine., P.Oxy.X 1326

description: [Text Description:] Receipt for payment of wine, 10 lines. ❧ [Text or Publication Number Note:] P.Oxy.X 1326, P.Oxy. 1326, Spurlock 1914.21.0027 ❧ [Excavation Description:] Excavated by archaeologists, including Bernard Pyne Grenfell and Arthur Surridge Hunt, at an ancient rubbish dump near Oxyrhynchus in Egypt (28°32'N 30°40'E, modern el-Bahnasa). ❧ [Medium:] Papyrus ❧ [Script Note:] Greek ❧ [Physical Object Description:] Papyrus manuscript, 10.6 x 6.5 cm.
DOI: 10.15468/dl.sf36bk
title: Occurrence Download

description: A dataset containing 11167382 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "Geometry POLYGON((-180 31,180 31,180 52,-180 52,-180 31))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Berberidopsidales, Santalales, Caryophyllales)"
 ]
}

 The dataset includes 11167382 records from 3681 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000583-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kuek8a
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.30_1",
 "TaxonKey is Michelia yunnanensis Franch. ex Finet & Gagnep."
 ]
}

 The dataset includes 159 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234987-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbjaiy
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coptotermes formosanus Shiraki, 1909"
 ]
}

 The dataset includes 17 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013888-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mkf5ar
title: Occurrence Download

description: A dataset containing 6725 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptophobia aripa elodia (Boisduval, 1836)"
 ]
}

 The dataset includes 6725 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050173-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ay2wb6
title: Occurrence Download

description: A dataset listing the 439 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-100.17986 19.51653,-100.35633 19.51515,-100.3886 19.41078,-100.39547 19.36272,-100.41882 19.33182,-100.28423 19.23706,-100.13798 19.22539,-100.19909 19.35516,-100.17712 19.41833,-100.17986 19.51653))",
 "TaxonKey is Chordata"
 ]
}

 The dataset's 439 records were derived from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0266967-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zsntnv
title: Occurrence Download

description: A dataset containing 2183 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Synaptomys borealis (Richardson, 1828)"
 ]
}

 The dataset includes 2183 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238728-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zcvzab
title: Occurrence Download

description: A dataset containing 6098 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Zenaida galapagoensis Gould, 1841"
 ]
}

 The dataset includes 6098 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0215452-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fslhcs
title: Occurrence Download

description: A dataset containing 497689 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is South Australian Museum Adelaide provider for OZCAM"
 ]
}

 The dataset includes 497689 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013888-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t6ahuh
title: Occurrence Download

description: A dataset containing 2978 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pandionidae"
 ]
}

 The dataset includes 2978 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256879-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cqcdug
title: Occurrence Download

description: A dataset containing 6073 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Wrightia R.Br."
 ]
}

 The dataset includes 6073 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226466-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gw5by3
title: Occurrence Download

description: A dataset containing 15137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bombus Latreille, 1802",
 "DatasetKey is one of (iNaturalist Research-grade Observations, Xerces Society - Bumble Bee Watch)",
 "Geometry POLYGON((-74 41,-59.5 41,-59.5 49.5,-74 49.5,-74 41))"
 ]
}

 The dataset includes 15137 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238738-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wtiupt
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-75.07267 10.64335,-75.06992 10.62069,-74.98341 10.5479,-74.88659 10.58773,-74.87423 10.70171,-74.98959 10.71545,-75.07267 10.64335))"
 ]
}

 The dataset includes 142 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013888-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.akggfg
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Chlorella vulgaris Beij."
 ]
}

 The dataset includes 83 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256880-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jbpffx
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eruca sativa var. erysimoides (Sieber ex Spreng.) Fiori"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046098-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zfcwe9
title: Occurrence Download

description: A dataset containing 901 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Axis axis (Erxleben, 1777)",
 "Year 2000-2021"
 ]
}

 The dataset includes 901 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0324400-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.i5adi4
title: Occurrence Download

description: A dataset containing 14998 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Lactuca virosa L."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 14998 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013889-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3hsq7
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.30_1",
 "TaxonKey is Keteleeria evelyniana Mast."
 ]
}

 The dataset includes 115 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0235001-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tx5bwp
title: Occurrence Download

description: A dataset containing 56143 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Orchidaceae"
 ]
}

 The dataset includes 56143 records from 189 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008169-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3vmues
title: Occurrence Download

description: A dataset containing 582732 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Esox lucius Linnaeus, 1758"
 ]
}

 The dataset includes 582732 records from 340 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0264539-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.phebal
title: Occurrence Download

description: A dataset containing 150438 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Columbina inca (R.Lesson, 1847)"
 ]
}

 The dataset includes 150438 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013888-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kqwkvd
title: Occurrence Download

description: A dataset containing 60639 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Apis mellifera Linnaeus, 1758"
 ]
}

 The dataset includes 60639 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0264532-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jurajk
title: Occurrence Download

description: A dataset containing 5821 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Wyethia Nutt."
 ]
}

 The dataset includes 5821 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226469-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v5h5tx
title: Occurrence Download

description: A dataset containing 106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year is greater than or equal to 1970",
 "HasCoordinate is true",
 "TaxonKey is Lobelia wollastonii Baker f.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 106 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041451-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xnghdh
title: Occurrence Download

description: A dataset containing 484 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-108 8,-78 8,-78 20,-108 20,-108 8))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Quararibea funebris (La Llave) Vischer",
 "Year 1980-2024"
 ]
}

 The dataset includes 484 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050174-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.