cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21644537.v1
title: Pond metacommunity biotic interactions

description: Macrophytes and macroinvertebrates data from 64 ponds distributed across an aridity gradient in Argentine Patagonia. We performed three statistical analyses to test the four study hypotheses (see " <strong>Macrophyte and macroinvertebrate metacommunity interactions across drought-threatened Patagonian ponds</strong> "). The first analysis consisted of the generation of separated distance biotic matrices (beta diversity for macrophytes and macroinvertebrates), and three predictor matrices to perform all potential correlations through Moran Spectral Randomization of Mantel tests (H1). In the second analysis, we fitted generalized dissimilarity models using macroinvertebrate beta diversity as a response variable (based on presence-absence and abundance data). Meanwhile, the predictor variables used were the abundance-based macrophyte beta diversity and the environmental variables (H2). Finally, we performed a JSDM using one presence-absence matrix as the response variable (i.e., merging the raw data on macrophytes and macroinvertebrates), and environmental variables as predictors (H3 and H4). We conducted all analyzes in the R software (R Core Team 2022).
DOI: 10.6084/m9.figshare.21644537
title: Pond metacommunity biotic interactions

description: Macrophytes and macroinvertebrates data from 64 ponds distributed across an aridity gradient in Argentine Patagonia. We performed three statistical analyses to test the four study hypotheses (see " <strong>Macrophyte and macroinvertebrate metacommunity interactions across drought-threatened Patagonian ponds</strong> "). The first analysis consisted of the generation of separated distance biotic matrices (beta diversity for macrophytes and macroinvertebrates), and three predictor matrices to perform all potential correlations through Moran Spectral Randomization of Mantel tests (H1). In the second analysis, we fitted generalized dissimilarity models using macroinvertebrate beta diversity as a response variable (based on presence-absence and abundance data). Meanwhile, the predictor variables used were the abundance-based macrophyte beta diversity and the environmental variables (H2). Finally, we performed a JSDM using one presence-absence matrix as the response variable (i.e., merging the raw data on macrophytes and macroinvertebrates), and environmental variables as predictors (H3 and H4). We conducted all analyzes in the R software (R Core Team 2022).
DOI: 10.6084/m9.figshare.21644537.v2
title: Pond metacommunity biotic interactions

description: Macrophytes and macroinvertebrates data from 64 ponds distributed across an aridity gradient in Argentine Patagonia. We performed three statistical analyses to test the four study hypotheses (see " <strong>Macrophyte and macroinvertebrate metacommunity interactions across drought-threatened Patagonian ponds</strong> "). The first analysis consisted of the generation of separated distance biotic matrices (beta diversity for macrophytes and macroinvertebrates), and three predictor matrices to perform all potential correlations through Moran Spectral Randomization of Mantel tests (H1). In the second analysis, we fitted generalized dissimilarity models using macroinvertebrate beta diversity as a response variable (based on presence-absence and abundance data). Meanwhile, the predictor variables used were the abundance-based macrophyte beta diversity and the environmental variables (H2). Finally, we performed a JSDM using one presence-absence matrix as the response variable (i.e., merging the raw data on macrophytes and macroinvertebrates), and environmental variables as predictors (H3 and H4). We conducted all analyzes in the R software (R Core Team 2022).
DOI: 10.6084/m9.figshare.21644537.v3
title: Pond metacommunity biotic interactions

description: Macrophytes and macroinvertebrates data from 64 ponds distributed across an aridity gradient in Argentine Patagonia. We performed three statistical analyses to test the four study hypotheses (see " <strong>Macrophyte and macroinvertebrate metacommunity interactions across drought-threatened Patagonian ponds</strong> "). The first analysis consisted of the generation of separated distance biotic matrices (beta diversity for macrophytes and macroinvertebrates), and three predictor matrices to perform all potential correlations through Moran Spectral Randomization of Mantel tests (H1). In the second analysis, we fitted generalized dissimilarity models using macroinvertebrate beta diversity as a response variable (based on presence-absence and abundance data). Meanwhile, the predictor variables used were the abundance-based macrophyte beta diversity and the environmental variables (H2). Finally, we performed a JSDM using one presence-absence matrix as the response variable (i.e., merging the raw data on macrophytes and macroinvertebrates), and environmental variables as predictors (H3 and H4). We conducted all analyzes in the R software (R Core Team 2022).
DOI: 10.5066/p9o3u8a9
title: Data Release: Peat collapse and vegetation shift after storm-driven saltwater surge in a tidal freshwater swamp, roots

description: Annual root production over time was measured by collecting data on ingrowth into mesh root bags. The study was conducted on tidal freshwater swamp environments subjected to salinity intrusion at Hickory Point State Forest near Pocomoke City, Maryland. Root bags were collected at 5 set locations within the study area from 2013 to 2021 and analyzed to determine the weight in grams of new root production per meter cubed each year.
DOI: 10.5066/p9v1n524
title: Data Release: Peat collapse and vegetation shift after storm-driven saltwater surge in a tidal freshwater swamp, tree height and density 2021

description: On November 11, 2021, the height, density, and species richness of trees were recorded in five plots along a 175 m transect at Hickory Point State Forest near Pocomoke City, Maryland. This data was divided into categories depending on if the tree was alive, dead, or a sapling. Emergent species' height, density, and richness was also recorded.
DOI: 10.5066/p9fkdvk2
title: Data release for Geochemistry of the Cretaceous Mowry Shale in the Wind River Basin, Wyoming

description: This Data Release contains data associated with the journal article "Geochemistry of the Cretaceous Mowry Shale in the Wind River Basin, Wyoming";. Data include bulk organic geochemistry, major and trace element geochemistry, mineralogy, extractable organic matter composition, extractable biomarkers, and organic stable carbon isotope analyses.
DOI: 10.5066/p928flvr
title: Data Release: Peat collapse and vegetation shift after storm-driven saltwater surge in a tidal freshwater swamp, SET

description: This study was conducted using surface elevation tables (SETs) to determine the change in soil height over time. The study took place at Hickory Point State Forest near Pocomoke City, Maryland from 2015 to 2021. Instead of using the SETs to measure elevation, this dataset uses the concept of the height of the topographic surface established with respect to a local vertical datum, which can be more accurately measured.
DOI: 10.5066/p90al0pn
title: Data to create and evaluate distribution models for invasive species for different geographic extents

description: We developed habitat suitability models for invasive plant species selected by Department of Interior land management agencies. We applied the modeling workflow developed in Young et al. 2020 to species not included in the original case studies. Our methodology balanced trade-offs between developing highly customized models for a few species versus fitting non-specific and generic models for numerous species. We developed a national library of environmental variables known to physiologically limit plant distributions (Engelstad et al. 2022 Table S1: https://doi.org/10.1371/journal.pone.0263056) and relied on human input based on natural history knowledge to further narrow the variable set for each species before developing habitat [...]
DOI: 10.5066/p997wsvs
title: Data Release: Peat collapse and vegetation shift after storm-driven saltwater surge in a tidal freshwater swamp, vegetation

description: This dataset documents the water quality in depth, salinity, and pH as well as the vegetation found in the freshwater swamps of Hickory Point State Forest near Pocomoke City, Maryland from 2013 to 2021.
DOI: 10.5066/p9jdoy24
title: Data Release: Peat collapse and vegetation shift after storm-driven saltwater surge in a tidal freshwater swamp, CTD Diver data

description: This dataset represents data collected from 2018 to 2021 by a submersible datalogger known as a CTD Diver located in a well 48 cm below soil level at Hickory Point State Forest near Pocomoke City, Maryland.
DOI: 10.5066/p9uits3d
title: Data Release: Peat collapse and vegetation shift after storm-driven saltwater surge in a tidal freshwater swamp, Taxodium distichum growth

description: In 2013 five Taxodium distichum trees along a 125 m long transect of Hickory Point State Forest outside Pocomoke City, Maryland were outfitted with dendrobands. Each year the growth of the T. distichum trees was measured in terms of the ratio of that year's circumference to the previous year's circumference. Tree growth was measured until the year the tree died or the conclusion of the study in 2021.
DOI: 10.5066/p91mnz32
title: Data set on reticuloendotheliosis in Hawaiian birds

description: Only one virus, Avipox, has been documented in wild birds in Hawaii. Here, using immunohistochemistry and PCR, we found that two native threatened Hawaiian geese, one with multicentric histiocytoma and another with toxoplasmosis and one Laysan albatross with avian pox were infected with reticuloendotheliosis virus (REV). The virus was isolated from one of the geese by cell culture. PCR surveys of other Hawaiian geese with various pathologies, avian pox cases, and pox viral isolates failed to reveal REV suggesting the virus is uncommon, at least in samples examined. The full genome of the Gag, Pol, and Env genes were sequenced for all three infected birds and revealed geographic divergence of the Pol gene suggesting it to be under strong selective pressure. Our finding of REV in Hawaii makes this only the second virus documented in native Hawaiian birds associated with pathology. Moreover, the presence of REV in a pelagic seabird is unusual. Future surveys should seek the reservoir of the virus in efforts to trace its origins.
DOI: 10.3886/e112479v1-131027
title: Replication data for: The Slave Trade and the Origins of Mistrust in Africa

description: We show that current differences in trust levels within Africa can be traced back to the transatlantic and Indian Ocean slave trades. Combining contemporary individual-level survey data with historical data on slave shipments by ethnic group, we find that individuals whose ancestors were heavily raided during the slave trade are less trusting today. Evidence from a variety of identification strategies suggests that the relationship is causal. Examining causal mechanisms, we show that most of the impact of the slave trade is through factors that are internal to the individual, such as cultural norms, beliefs, and values. (JEL J15, N57, Z13)
DOI: 10.5517/ccdc.csd.cc2cpkl7
title: CCDC 2195469: Experimental Crystal Structure Determination

description: Related Article: Debasmita Mondal, Subhendu Pramanik, Chinmay Chowdhury|2022|Org.Lett.|24|8698|doi:10.1021/acs.orglett.2c03625
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cpkm8
title: CCDC 2195470: Experimental Crystal Structure Determination

description: Related Article: Debasmita Mondal, Subhendu Pramanik, Chinmay Chowdhury|2022|Org.Lett.|24|8698|doi:10.1021/acs.orglett.2c03625
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cpkn9
title: CCDC 2195471: Experimental Crystal Structure Determination

description: Related Article: Debasmita Mondal, Subhendu Pramanik, Chinmay Chowdhury|2022|Org.Lett.|24|8698|doi:10.1021/acs.orglett.2c03625
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.21671015.v1
title: Distribution, chemical speciation and human health risk assessment of metals in soil particle size fractions from an industrial area

description: This is the supplementary information for the manuscript titled "Distribution, chemical speciation and human health risk assessment of metals in soil particle size fractions from an industrial area"
DOI: 10.6084/m9.figshare.21671015
title: Distribution, chemical speciation and human health risk assessment of metals in soil particle size fractions from an industrial area

description: This is the supplementary information for the manuscript titled "Distribution, chemical speciation and human health risk assessment of metals in soil particle size fractions from an industrial area"
DOI: 10.6084/m9.figshare.21671015.v3
title: Distribution, chemical speciation and human health risk assessment of metals in soil particle size fractions from an industrial area

description: This is the supplementary information for the manuscript titled "Distribution, chemical speciation and human health risk assessment of metals in soil particle size fractions from an industrial area"
DOI: 10.6084/m9.figshare.21671015.v2
title: Distribution, chemical speciation and human health risk assessment of metals in soil particle size fractions from an industrial area

description: This is the supplementary information for the manuscript titled "Distribution, chemical speciation and human health risk assessment of metals in soil particle size fractions from an industrial area"
DOI: 10.6084/m9.figshare.21671030
title: Supplementary data for Early Devonian Sea Surface Temperature Constrained by In-situ δ18O and Clumped Isotopes of Fish Fossils

description: Supplementary data for Early Devonian Sea Surface Temperature Constrained by In-situ δ18O and Clumped Isotopes of Fish Fossils.
DOI: 10.6084/m9.figshare.21671030.v2
title: Supplementary data for Early Devonian Sea Surface Temperature Constrained by In-situ δ18O and Clumped Isotopes of Fish Fossils

description: Supplementary data for Early Devonian Sea Surface Temperature Constrained by In-situ δ18O and Clumped Isotopes of Fish Fossils.
DOI: 10.6084/m9.figshare.21671030.v1
title: Supplementary data for Early Devonian Sea Surface Temperature Constrained by In-situ δ18O and Clumped Isotopes of Fish Fossils

description: Supplementary data for Early Devonian Sea Surface Temperature Constrained by In-situ δ18O and Clumped Isotopes of Fish Fossils.
DOI: 10.5281/zenodo.7395412
title: AlphaFold2 models of human DNA polymerase epsilon catalytic subunit A

description: Models of the structure of human DNA polymerase epsilon catalytic subunit A built with the program AlphaFold2. Files are in mmCIF format. Models include: 1) DPOE1_HUMAN_AF2_NterminalLobe_4m8o.cif : AlphaFold2 model built with template PDB:4M8O (yeast DNA polymerase epsilon N-terminal lobe with bound DNA) 2) DPOE1_HUMAN_AF2_FullLength_6wjv.cif : AlphaFold2 model built with template PDB:6WJV (yeast DNA polymerase epsilon full-length protein, N and C terminal lobes, without DNA). 3) DPOE1_HUMAN_AF2_NterminalLobe_4m8o_withDNA.cif : AlphaFold2 model built with template 4M8O (File #1 above) with DNA added from PDB entry 4M8O and subjected to energy minimization with the program AMBER using force field ff14SB. The models were used to estimate the change in free energy of mutations found in patients with ovarian cancer, colon cancer, and endometrial cancer. Paper to be submitted Dec 2022.
description: {"references": ["Jumper, J. et al. Nature, 596, 583\u2013589 (2021)."]}
DOI: 10.5281/zenodo.7395411
title: AlphaFold2 models of human DNA polymerase epsilon catalytic subunit A

description: Models of the structure of human DNA polymerase epsilon catalytic subunit A built with the program AlphaFold2. Files are in mmCIF format. Models include: 1) DPOE1_HUMAN_AF2_NterminalLobe_4m8o.cif : AlphaFold2 model built with template PDB:4M8O (yeast DNA polymerase epsilon N-terminal lobe with bound DNA) 2) DPOE1_HUMAN_AF2_FullLength_6wjv.cif : AlphaFold2 model built with template PDB:6WJV (yeast DNA polymerase epsilon full-length protein, N and C terminal lobes, without DNA). 3) DPOE1_HUMAN_AF2_NterminalLobe_4m8o_withDNA.cif : AlphaFold2 model built with template 4M8O (File #1 above) with DNA added from PDB entry 4M8O and subjected to energy minimization with the program AMBER using force field ff14SB. The models were used to estimate the change in free energy of mutations found in patients with ovarian cancer, colon cancer, and endometrial cancer. Paper to be submitted Dec 2022.
description: {"references": ["Jumper, J. et al. Nature, 596, 583\u2013589 (2021)."]}
DOI: 10.6084/m9.figshare.21671048
title: FT-ICR-MS data used in study

description: Competitive generation mechanisms of halogenated macromolecular organics induced by Br- and I- during plasma preoxidation/chlorination of DOM<br>
DOI: 10.6084/m9.figshare.21671048.v1
title: FT-ICR-MS data used in study

description: Competitive generation mechanisms of halogenated macromolecular organics induced by Br- and I- during plasma preoxidation/chlorination of DOM<br>
DOI: 10.15151/esrf-es-970115671
title: Tuning the magnetic properties of 2D molecule-based magnets via rational control of the layer-layer distance

description: In our group’s efforts toward high-temperature molecule-based magnets, we have recently reported the network Li0.7[Cr(pyrazine)2]Cl0.7∙0.25(THF) (THF = tetrahydrofuran), which features ferrimagnetic order up to a ground-breaking critical temperature of 515 K. It is the aim of this project to further our understanding of this network by examining the effect of substituting Li+ in the synthesis for other alkali metal cations (Na+, K+, Rb+, and Cs+). We seek to probe the physical, electronic, and magnetic structure in these compounds via X-ray absorption near edge structure (XANES), X-ray magnetic circular dichroism (XMCD), and high-resolution powder X-ray diffraction (HR-PXRD). Elucidating the effects of the alkali metal on the magnetic hysteresis, Tc, layer-layer distance, and other properties will extend our ability to rationally design 2D networks toward desired properties, paving the way for new and improved molecule-based magnets for applications in next-generation devices.
DOI: 10.15151/esrf-es-968511038
title: The nanostructure of the enthesis and the impact of mechanical unloading on its hierarchical structure, studied by scanning SAXS/WAXS/XRF

description: The enthesis is the biological site where tendon attaches to bone. It is thus of great importance for biomechanical load transfer and achieves the task of interfacing bone and tendon through a highly optimized nanostructure and mineralization strategy. The nanostructure is actively formed in response to the prevailing load conditions. A chronic change of the enthesis’ load conditionsleads to structural remodeling which alters the mechanical properties. Understanding these structural changes and coupling them to the mechanical properties is essential to optimize prophylactic and rehabilitative medical procedures. This experiment aims at characterizing the nanostructure and mineralization of the enthesis by scanning SAXS/WAXS and XRF. By studying the Achilles tendon enthesis (ATE) of freely-moving mice and hindlimb-unloaded mice, this experiment addresses the question how mechanical unloading impacts the enthesis nanostructure.
DOI: 10.6084/m9.figshare.21671057
title: Arsenic periostin skin lesions data set.xlsx

description: This a minimun raw data set for the manuscript named "Association between serum periostin levels and the severity of arsenic-induced skin lesions" will be published in plosone journal.
DOI: 10.6084/m9.figshare.21671057.v1
title: Arsenic periostin skin lesions data set.xlsx

description: This a minimun raw data set for the manuscript named "Association between serum periostin levels and the severity of arsenic-induced skin lesions" will be published in plosone journal.
DOI: 10.5281/zenodo.7395498
title: Archive comité de suivie

description: Cette archive contient les lignes de produits créées grâce à <em>Mobioos Forge</em> ainsi que le code source des différents variants générés. Elle contient aussi un fichier <em>README.html</em> qui présente les Feature Models ainsi que les variants. Le fichier contient aussi quelques indications pour aider à l'éxécution des variants.
DOI: 10.5281/zenodo.7395497
title: Archive comité de suivie

description: Cette archive contient les lignes de produits créées grâce à <em>Mobioos Forge</em> ainsi que le code source des différents variants générés. Elle contient aussi un fichier <em>README.html</em> qui présente les Feature Models ainsi que les variants. Le fichier contient aussi quelques indications pour aider à l'éxécution des variants.
DOI: 10.6084/m9.figshare.21101938
title: Supplementary Material for: PROX1 was associated with LGR5 and Wnt signaling and contributed to poor prognosis in gastric cancer

description: Introduction: We investigated prospero homeobox protein-1 (PROX1) expression in gastric cancer (GC) as a prognostic marker and its relationship with LGR5 and Wnt/β-catenin activity in GC. Methods: A total of 196 cases of patients who underwent GC surgery were retrospectively collected and reviewed. PROX1, LGR5, Wnt3a, and β-catenin expression was evaluated by using immunohistochemistry. The relationship between PROX1 expression and clinicopathological features was also evaluated. Results: The PROX1 low-expression group had 105 patients (53.6%) and the high-expression group 91 patients (46.4%). For LGR5, 76 patients (38.8%) had low expression and 120 (61.2%) high expression. The PROX1 low-expression group was significantly younger (p = 0.0095), had more intestinal type (p = 0.014), and smaller tumor size (p = 0.013). The PROX1 high-expression group significantly correlated with high LGR5 expression (p &lt; .0001) and high Wnt3a expression (p = 0.012). There were more cases of postoperative recurrence in the PROX1 high-expression group (p = 0.013). Conclusion: Our findings show that PROX1 correlates with LGR5 and Wnt3a signaling in GC and has a poor prognosis with postoperative recurrence.