cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15674470
title: Electronic Supplementary Material for: "Paleoecology indicates wave conditions as key factor in coral reef development"

description: This zipped data repository accompanies the paper "Paleoecology indicates wave conditions as key factor in coral reef development".

SM-1: dGNSS Data

All processed differential GNSS survey points are outlined in  the Excel file “Table SM-2”. EMLID Studio was used for the primary GNSS post processing. In the Stop-and-Go function within the app, GPS and GLONASS signals were processed using the Fix and Hold setting for Integer Ambiguity Resolution.

On Aruba, base station data is provided by EarthScope Consortium (was UNAVCO). Archived RENIX streams were downloaded for station ID CN19, located at the northern tip of Aruba. (https://data.unavco.org/archive/gnss/logs/cn19log.txt)



Base Receiver Type       : TRIMBLE NETR9

Satellite System         : GPS

Serial Number            : 5219K84957

Firmware Version         : 5.42

Elevation Cutoff Setting :  deg

Date Installed           : 2020-03-06T23:11Z

Temperature Stability.    : none


Ellipsoid to EGM08 (Geoid elevation) calculated on https://www.unavco.org/software/geodetic-utilities/geoid-height-calculator/geoid-height-calculator.html

Final positions for each measurement were also filtered and only FLOAT and FIX quality positions were used to establish the final corrected position.

The column Elev. Final (m) represents the Emlid studio rover corrected elevation translated to EGM08. Easting RMS, Northing RMS and Ellipsoid RMS are 2-simga outputs from Emlid Studio. The final Elevation RMS [termed Combined Elevation RMS] is the RMS of the max EGM08 cubic interpolation and quantization errors (0.0022 m) combined with the Ellipsoid RMS output from Emlid Studio. RMS represent 95%. 

SM-2: Orthomosaics and associated quality reports from AgiSoft Metashape

The orthomosaics referenced in this paper are detailed in the Excel file "Table SM-1". Orthomosaics are organized by respective island and available as a .TIFF file. Each project is then accompanied by a corresponding quality report generated using AgiSoft Metashape Professional edition (version 2.1.0 build 17532). The python-script used to extract the point-intercept transects (PIT) in  QGIS is provided under "PIT-10m-10cm.py" and requires the user to enter start and end coordinates of the PIT while using a meter based coordinate system. 

SM-3: 124 ka atmospheric circulation model parameters and output

The annual mean U- and V- components of the 10 m  wind velocity model outputs for the 124 ka and pre-industrial model (PI) are provided as netCDF files under /SM-3 Wind_Models/.

SM-4: Hydrodynamic model set-up and output

Delft 3D model set-ups and outputs for the 127 ka, 124 ka, and PI hydrodynamic models are organized into respective sub-folders under /SM-4 Wave_Models/.
DOI: 10.15468/dl.4mr66v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cerebratulus multiporatus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017575-251025141854904/datasets/export for details.
DOI: 10.13140/rg.2.2.17454.37447
title: CV (extrait : activité 2020-2025) de Béatrice GALINON-MELENEC Professeur des universités émérite UMR IDEES 6266 CNRS Normandie université le Havre
DOI: 10.57967/hf/6882
title: NTEU_Multilingual_Evaluation_Dataset
DOI: 10.6084/m9.figshare.30539882
title: Boar dataset

description: The provided dataset includes the genotype and phenotype dataset of sire and damline boars born between 2011 and 2023. The SNP locations of the genotype data have been randomly shuffled, and the phenotype is Z-score normalized. The dataset belongs to Topigs Norsvin, and therefore, it is mandatory to acknowledge them if the dataset is used for research purposes.
DOI: 10.6084/m9.figshare.30539882.v1
title: Boar dataset

description: The provided dataset includes the genotype and phenotype dataset of sire and damline boars born between 2011 and 2023. The SNP locations of the genotype data have been randomly shuffled, and the phenotype is Z-score normalized. The dataset belongs to Topigs Norsvin, and therefore, it is mandatory to acknowledge them if the dataset is used for research purposes.
DOI: 10.15468/dl.6r2879
title: Occurrence Download

description: A dataset containing 186816 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Antarctica, Oceania, Africa, South America)",
 "TaxonKey is Diomedeidae"
 ]
}

 The dataset includes 186816 records from 199 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017541-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17529826
title: Underwater images collected by a Paddle in Black-Rocks, Mauritius - 2017-11-19

description: This dataset was collected by a Paddle in Black-Rocks, Mauritius - 2017-11-19. 

            Underwater or aerial images collected by scientists or citizens can have a wide variety of use for science, management, or conservation.
            These images can be annotated and shared to train IA models which can in turn predict the objects on the images.
            We provide a set of tools (hardware and software) to collect marine data, predict species or habitat, and provide maps.

            This dataset is part of larger collection referencing numerous underwater and aerial images Seatizen Altas. 
            Methods, tools and scientific objectives are also described in a dedicated data paper.

            

            
 Generic folder structure 
            
            YYYYMMDD_COUNTRYCODE-optionalplace_device_session-number 
            ├── DCIM :  folder to store videos and photos depending on the media collected. 
            ├── GPS :  folder to store any positioning related file. If any kind of correction is possible on files (e.g. Post-Processed Kinematic thanks to rinex data) then the distinction between device data and base data is made. If, on the other hand, only device position data are present and the files cannot be corrected by post-processing techniques (e.g. gpx files), then the distinction between base and device is not made and the files are placed directly at the root of the GPS folder. 
            │   ├── BASE :  files coming from rtk station or any static positioning instrument. 
            │   └── DEVICE : files coming from the device. 
            ├── METADATA : folder with general information files about the session. 
            ├── PROCESSED_DATA : contain all the folders needed to store the results of the data processing of the current session. 
            │   ├── BATHY :  output folder for bathymetry raw data extracted from mission logs. 
            │   ├── FRAMES :  output folder for georeferenced frames extracted from DCIM videos. 
            │   ├── IA :  destination folder for image recognition predictions. 
            │   └── PHOTOGRAMMETRY :  destination folder for reconstructed models in photogrammetry. 
            └── SENSORS : folder to store files coming from other sources (bathymetry data from the echosounder, log file from the autopilot,  mission plan etc.).       
            

            
 Software 
            All the raw data was processed using our worflow. All predictions were generated by our inference pipeline. You can find all the necessary scripts to download this data in this repository. Enjoy your data with SeatizenDOI!
DOI: 10.15468/dl.vdj2zc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cerebratulus oleaginus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017578-251025141854904/datasets/export for details.
DOI: 10.5281/zenodo.17531800
title: Indian Transport Emission Gridded Dataset

description: This dataset presents a comprehensive high-resolution (10 km × 10 km) gridded emission inventory for India’s transport sector. It includes more than ten vehicle categories 2 wheelers, 3 wheelers, cars, buses, light commercial vehicles (LCV), heavy commercial vehicles (HCV), and miscellaneous vehicles (MSLV) operating on petrol, diesel, and CNG fuels. Emissions are estimated for nine major pollutants: CO, NOx, VOC, SO₂, CO₂, PM₂.₅, PM₁₀, BC, and OC, covering the entire Indian subcontinent for the year 2025. The dataset has been developed by incorporating recent policy interventions such as the inclusion of both registered and unregistered electric vehicles, vehicle scrappage initiatives, and updated emission factors. This comprehensive and policy-relevant dataset provides a robust basis for air quality modeling, trend assessment, and scenario-based emission mitigation analysis, supporting researchers and policymakers in designing sustainable transport and climate action strategies for India.
DOI: 10.5281/zenodo.17531801
title: Indian Transport Emission Gridded Dataset

description: This dataset presents a comprehensive high-resolution (10 km × 10 km) gridded emission inventory for India’s transport sector. It includes more than ten vehicle categories 2 wheelers, 3 wheelers, cars, buses, light commercial vehicles (LCV), heavy commercial vehicles (HCV), and miscellaneous vehicles (MSLV) operating on petrol, diesel, and CNG fuels. Emissions are estimated for nine major pollutants: CO, NOx, VOC, SO₂, CO₂, PM₂.₅, PM₁₀, BC, and OC, covering the entire Indian subcontinent for the year 2025. The dataset has been developed by incorporating recent policy interventions such as the inclusion of both registered and unregistered electric vehicles, vehicle scrappage initiatives, and updated emission factors. This comprehensive and policy-relevant dataset provides a robust basis for air quality modeling, trend assessment, and scenario-based emission mitigation analysis, supporting researchers and policymakers in designing sustainable transport and climate action strategies for India.
DOI: 10.15468/dl.eeksrj
title: Occurrence Download

description: A dataset containing 22135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Germany, Czechia, Slovakia)",
 "TaxonKey is Myocastor coypus"
 ]
}

 The dataset includes 22135 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017579-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4qjcre
title: Occurrence Download

description: A dataset containing 621403 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Iris pseudacorus"
 ]
}

 The dataset includes 621403 records from 2586 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017515-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cd2r34
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Xylosandrus crassiusculus, Xylosandrus crassiusculus, Anoplophora glabripennis, Pulvinaria hydrangeae, Agrilus planipennis)",
 "Year is one of (2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2022, 2023, 2024, 2025)",
 "DecimalLatitude is greater than or equal to 44.95782311925129",
 "DecimalLatitude is less than or equal to 58.30331634439415",
 "DecimalLongitude is greater than or equal to -10.001896207643075",
 "DecimalLongitude is less than or equal to 30.31691447027875",
 "Year is not null",
 "HasCoordinate is TRUE",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017685-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fpu3vr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Xylosandrus crassiusculus, Xylosandrus crassiusculus, Anoplophora glabripennis, Pulvinaria hydrangeae, Agrilus planipennis)",
 "Year is one of (2020, 2021, 2022, 2023, 2024)",
 "DecimalLatitude is greater than or equal to 47.3024876979",
 "DecimalLatitude is less than or equal to 54.983104153",
 "DecimalLongitude is greater than or equal to 5.98865807458",
 "DecimalLongitude is less than or equal to 15.0169958839",
 "Year is not null",
 "HasCoordinate is TRUE",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017686-250711103210423/datasets/export for details.
DOI: 10.15468/dl.m8fqbq
title: Occurrence Download

description: A dataset containing 634 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Rhoptropus bradfieldi"
 ]
}

 The dataset includes 634 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017688-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15920725
title: Proxy-proxy dataset
DOI: 10.15468/dl.67vs4w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Setophaga petechia)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017687-250711103210423/datasets/export for details.
DOI: 10.15468/dl.w3uwr4
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cardamine peruviana"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017689-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n87yvw
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cota triumfetti",
 "Country is Armenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 33 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017695-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15850111
title: Bryne: sustainable prototyping of finite element models - Simulation data

description: This dataset contains simulation results used in the publication "Bryne: sustainable prototyping of finite element models".  Detailed descriptions of the individual cases can be found in the paper.

The simulation outputs are enriched with the respective inputs used to set up the finite element simulations. Setups include definition of the mesh (sizes), material, and numerical parameters. Setups are given as Python for scripted inputs (e.g. function definitions)  and human-readable .yaml files for simple parameters.  Simulation outputs are written in Paraview .vtk and .vtu files, which are contained in the outputs/MODEL_NAME/paraview folder of the respective simulation. MODEL_NAME corresponds to the model. See also the readme.md

The additional folder figure_collection contains the raw result plots from the publication, along with the respective simulation inputs used to obtain the figure.
DOI: 10.5281/zenodo.15850110
title: Bryne: sustainable prototyping of finite element models - Simulation data

description: This dataset contains simulation results used in the publication "Bryne: sustainable prototyping of finite element models".  Detailed descriptions of the individual cases can be found in the paper.

The simulation outputs are enriched with the respective inputs used to set up the finite element simulations. Setups include definition of the mesh (sizes), material, and numerical parameters. Setups are given as Python for scripted inputs (e.g. function definitions)  and human-readable .yaml files for simple parameters.  Simulation outputs are written in Paraview .vtk and .vtu files, which are contained in the outputs/MODEL_NAME/paraview folder of the respective simulation. MODEL_NAME corresponds to the model. See also the readme.md

The additional folder figure_collection contains the raw result plots from the publication, along with the respective simulation inputs used to obtain the figure.
DOI: 10.15468/dl.znwnxj
title: Occurrence Download

description: A dataset containing 2467 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "Geometry POLYGON((-18.66248 27.32322,-13.2906 27.32322,-13.2906 29.53336,-18.66248 29.53336,-18.66248 27.32322))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Apollonias barbusana, Apollonias barbujana, Apollonias barbujana, Apollonias barbujana, Apollonias barbujana ceballosii, Apollonias barbujana barbujana, Persea barbujana, Adenocarpus foliolosus, Adenocarpus foliolosus glabrescens, Adenocarpus foliolosus villosus, Adenocarpus foliolosus adenocalyx, Adenocarpus foliolosus gomaraeus, Brachypodium arbuscula, Brachypodium arbuscula, Brachypodium arbuscula, Brachypodium ramosum arbuscula, Canarina canariensis, Canarina canariensis, Dracunculus canariensis, Heberdenia excelsa, Heberdenia excelsa, Heberdenia excelsa, Heberdenia bahamensis, Luzula canariensis, Myrica faya, Myrica faya, Myrica faya nanophylla, Morella faya, Persea indica, Retama rhodorhizoides, Retama monosperma rhodorrhizoides, Spartocytisus filipes, Cytisus filipes)",
 "Year 1979-2025"
 ]
}

 The dataset includes 2467 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017691-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dc5abq
title: Occurrence Download

description: A dataset containing 10658 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Columba livia",
 "Country is Bahamas",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10658 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017694-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5bjekf
title: Occurrence Download

description: A dataset containing 437691 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Halcyon senegalensis, Halcyon pileata, Halcyon malimbica, Halcyon leucocephala, Halcyon gularis, Halcyon cyanoventris, Halcyon coromanda, Halcyon chelicuti, Halcyon badia, Halcyon albiventris)"
 ]
}

 The dataset includes 437691 records from 301 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017601-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k5aqyw
title: Occurrence Download

description: A dataset containing 5665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((147.15971 36.76465,115.2295 44.07261,99.15206 39.01325,98.81475 17.42669,109.27077 5.73397,143.67439 11.01815,147.15971 36.76465))",
 "TaxonKey is Platycarya strobilacea"
 ]
}

 The dataset includes 5665 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017690-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15918658
title: The Effect of Different Plant Nutrients on the Yield and Yield Components of the Faba Bean (Vicia faba L.)

description: The dataset originates from the MSc thesis submitted by Rabia Parıldar to the Department of Field Crops, Institute of Science, Dicle University, in 2018. The findings obtained from this dataset were also presented at a congress in a study titled “The Effect of Different Plant Nutrients on the Yield and Yield Components of the Faba Bean (Vicia faba L.)”.

The study includes plant traits collected at various growth stages, as well as yield and yield component data measured at harvest. The data provides valuable insight into the impact of different plant nutrient applications on the performance of faba bean crops under field conditions.
DOI: 10.15468/dl.x64dyh
title: Occurrence Download

description: A dataset containing 2235 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Margariscus margarita"
 ]
}

 The dataset includes 2235 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017696-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.seabja
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Laggera tomentosa",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 14 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017697-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p737jk
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bromus mollis rarus, Bromus mollis simplicissimus, Bromus mollis thyrsiformis, Bromus mollis typicus, Bromus mollis vulgaris, Bromus mollis hordaceus, Bromus mollis hordeaceus, Bromus mollis hordeaceus, Bromus mollis nanus, Bromus mollis subglaber)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017698-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.