cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11254304.v1
title: Efficient Regionalization for Spatially Explicit Neighborhood Delineation

description: # Efficient Regionalization for Spatially Explicit Neighborhood Delineation<br>## AbstractNeighborhood delineation is increasingly relied upon in urban social science research to identify the most appropriate spatial unit. In problems of this type, the true number of neighborhoods (typically called the k parameter) is unknown and analysts often require algorithmic approaches determine kendogenously. Existing approaches for neighborhood delineation that do not require pre-specification ofa k-parameter, however, are either nonspatial or lead to noncontiguous or overlapping regions. In this paper, we propose the use of max-p-regions for neighborhood delineation so that the geographic space can be partitioned into a set of homogeneous and geographically contiguous neighborhoods. In addition, we developed a new efficient algorithm to address the computational challenges associated with solving the max-p-regions so that it can be applied for large-scale neighborhood delineation. This new algorithm is implemented in the open-source Python Spatial Analysis Library (PySAL). Computational experiments based on both simulated and realistic data sets are performed and the results demonstrate its effectiveness and efficiency.<br>## Instructions<br><br>The files in this archive demonstrate the code for the new max-p algorithm.<br>To run the demonstration, please do the following:<br>1. extract the archive `unzip maxp.zip`2. Install [Anaconda python distribution](https://www.anaconda.com/distribution)3. `conda env create -f environment.yml`4. `conda activate maxp`5. `jupyter notebook`6. Select the notebook `demo.ipynb`<br>
DOI: 10.6084/m9.figshare.11250116
title: Peru Intact Forest Landscape Corridors

description: Corridors between tropical Intact Forest Landscapes (Potapov et al. 2017) were derived from the UMD Global Land Analysis and Discovery lab's Global Forest Change Database (Hansen et al. 2013).<br><br>Tree cover from the year 2000 and forest loss and gain between 2000 and 2012 were used as inputs to a corridor algorithm which maps a large number of corridors between source and target patches for the years 2000 and again for 2012. The algorithm preferentially maps corridors through high tree cover areas.<br><br>Pixel values are weighted by the amount of tree cover in source and target patches and the importance of each pixel for connecting patches. The higher the value, the more important a pixel is for connecting patches with a large amount of tree cover. Pixels with a value of zero are not within any corridor. Corridors were not mapped for patches &gt; 130 km apart. The algorithm assumes a linear relationship between forest cover and the ability of animals to move through the landscape. Corridors were clipped to the boundary of Peru and resampled to a resolution of 540 m.<br>
DOI: 10.6084/m9.figshare.11246510
title: Survey_NLP_for_Code_Generation_Screened_Papers.xls

description: This is an excel sheet containing the screened papers during the literature survey "Natural Language Processing Techniques for Code Generation".
DOI: 10.6084/m9.figshare.11243627
title: CAAV_Dataset

description: Contains a dataset with the average scores, for both valence and arousal dimensions, for each video.
DOI: 10.6084/m9.figshare.11253152.v1
title: Project archive

description: Dataset for manuscript replication.<br>
DOI: 10.6084/m9.figshare.11242820
title: MZ_0074_003_Neophyllobius_glaesus_60x_legII_left_ventralsecondpreparation

description: <b>Species:</b> <i>Neophyllobius glaesus</i> Zmudzinski<b>Source:</b> Baltic amber<b>Deposition: </b>Geological-Paleontological Institute and Museum of the University of Hamburg, Germany, under the collection number GPIH 4995<b>Author's catalog number:</b> MZ_XXXX_003_Neophyllobius_glaesus_XXx_XXX_info<b>Microscope:</b> Nikon Eclipse Ni-U<br><b>Camera:</b> Nikon DS-Ri2<b>Image aquisition software:</b> NIS-Elements D<b>Optics:</b> CFI Apochromat NIR 60X W + DIC
DOI: 10.6084/m9.figshare.11243600
title: Study Characteristics

description: Study Characteristics
DOI: 10.6084/m9.figshare.11243600.v1
title: Study Characteristics

description: Study Characteristics
DOI: 10.6084/m9.figshare.11243615
title: CAAV_RawData

description: Contains a dataset with the average scores, for both valence and arousal dimensions, for each video.
DOI: 10.6084/m9.figshare.11240654
title: Peru Forest Fragmentation

description: The Forest Spatial Morphology Database 1.0 was derived from the UMD Global Land Analysis and Discovery lab's Global Forest Change Database. <br><br>Tree cover from the year 2000 and tree cover loss and gain between 2000 and 2012 were used as inputs to a morphological spatial pattern analysis (MSPA) to create tropical forest fragmentation maps for the years 2000 and 2012 under different scenarios of edge effect, forest threshold, and minimum fragmenting patch size.<br>Layers were clipped to the country boundary of Peru. Refer to the README.txt file for more information.<br><br>
DOI: 10.6084/m9.figshare.11242820.v1
title: MZ_0074_003_Neophyllobius_glaesus_60x_legII_left_ventralsecondpreparation

description: <b>Species:</b> <i>Neophyllobius glaesus</i> Zmudzinski<b>Source:</b> Baltic amber<b>Deposition: </b>Geological-Paleontological Institute and Museum of the University of Hamburg, Germany, under the collection number GPIH 4995<b>Author's catalog number:</b> MZ_XXXX_003_Neophyllobius_glaesus_XXx_XXX_info<b>Microscope:</b> Nikon Eclipse Ni-U<br><b>Camera:</b> Nikon DS-Ri2<b>Image aquisition software:</b> NIS-Elements D<b>Optics:</b> CFI Apochromat NIR 60X W + DIC
DOI: 10.6084/m9.figshare.11240654.v1
title: Peru Forest Fragmentation

description: The Forest Spatial Morphology Database 1.0 was derived from the UMD Global Land Analysis and Discovery lab's Global Forest Change Database. <br><br>Tree cover from the year 2000 and tree cover loss and gain between 2000 and 2012 were used as inputs to a morphological spatial pattern analysis (MSPA) to create tropical forest fragmentation maps for the years 2000 and 2012 under different scenarios of edge effect, forest threshold, and minimum fragmenting patch size.<br>Layers were clipped to the country boundary of Peru. Refer to the README.txt file for more information.<br><br>
DOI: 10.6084/m9.figshare.11235803
title: PC_1_10.xlsx

description: PCA of Norwegian population and the returned mean componenet values
DOI: 10.6084/m9.figshare.11239022.v1
title: Data from "SUMO1 modification of PKD2 channels regulates arterial contractility"

description: SUMO1-PKD2
DOI: 10.6084/m9.figshare.11233364
title: Coral Reef Meta-analysis

description: dataset and citations
DOI: 10.6084/m9.figshare.11233877
title: Coral Reef Meta-Analysis Data

description: dataset and citations of all papers used in meta-analysis
DOI: 10.6084/m9.figshare.11235890
title: HF continent

description: Human footprint by continent: 2000-2005-2010-2013<br>
DOI: 10.6084/m9.figshare.11232782
title: data set and citations used

description: dataset and citation of papers used in meta-analysis
DOI: 10.6084/m9.figshare.11233877.v1
title: Coral Reef Meta-Analysis Data

description: dataset and citations of all papers used in meta-analysis
DOI: 10.6084/m9.figshare.11233364.v1
title: Coral Reef Meta-analysis

description: dataset and citations
DOI: 10.6084/m9.figshare.11235890.v1
title: HF continent

description: Human footprint by continent: 2000-2005-2010-2013<br>
DOI: 10.6084/m9.figshare.11232782.v1
title: data set and citations used

description: dataset and citation of papers used in meta-analysis
DOI: 10.6084/m9.figshare.11231627
title: FORENSIC, an online platform for fecal source identification

description: R scripts to create, train and test random forest classifiers.
DOI: 10.6084/m9.figshare.11225900
title: Supplementary files "recurrent aphthous stomatitis and quality of life".

description: Supplementary files "thrush and quality of life".
DOI: 10.6084/m9.figshare.11231627.v1
title: FORENSIC, an online platform for fecal source identification

description: R scripts to create, train and test random forest classifiers.
DOI: 10.6084/m9.figshare.11232188.v1
title: First and second-order characteristics of spatio-temporal point processes on linear networks

description: We present several characteristics for spatio-temporal point patterns when the spatial locations are restricted to a linear network. A non-parametric kernel-based intensity estimator is proposed to highlight the concentration of events within the network and time, either jointly or separately. We also provide second-order characteristics for spatio-temporal point patterns on linear networks such as <i>K</i>-function and pair correlation function to analyse the type of interaction between points. They are independent of network’s geometry and have known values for Poisson point processes. Finally, we consider some applications to traffic accidents and demonstrate our findings by analysing datasets of Houston (US), Medellín (Colombia) and Eastbourne (UK).
DOI: 10.6084/m9.figshare.11225741
title: supporting information.xlsx

description: Full data set for systemic hemodynamic parameters in sham-operated rats (SHAM), rats with induced postischemic AKI (AKI), animals with AKI and apocynin treatment (AKI+APO), group with HBO preconditioning before AKI inducing (AKI+HBO) and group with HBO preconditioning before and apocynin treatment after AKI induction (AKI+APO+HBO) MAP (mmHg)-mean arterial pressure, HR (beat/min)-hearth rate, TVPR (mmHg x min x kg/ml)-Total peripheral vascular resistance, CO (ml/min/kg)-cardiac output
DOI: 10.6084/m9.figshare.11224118
title: Lazzaro et al_Secondary succession

description: Raw data on community matrix and on samplig design
DOI: 10.6084/m9.figshare.11231627.v2
title: FORENSIC, an online platform for fecal source identification

description: R scripts to create, train and test random forest classifiers.
DOI: 10.6084/m9.figshare.11223302
title: Stefater portal vein metabolomics CV by method

description: Internal standards and coefficient of variation for each metabolite included in the metabolomics platform used in Stefater et al., <i>Journal of the Endocrine Society, </i>2020.
DOI: 10.6084/m9.figshare.11225741.v1
title: supporting information.xlsx

description: Full data set for systemic hemodynamic parameters in sham-operated rats (SHAM), rats with induced postischemic AKI (AKI), animals with AKI and apocynin treatment (AKI+APO), group with HBO preconditioning before AKI inducing (AKI+HBO) and group with HBO preconditioning before and apocynin treatment after AKI induction (AKI+APO+HBO) MAP (mmHg)-mean arterial pressure, HR (beat/min)-hearth rate, TVPR (mmHg x min x kg/ml)-Total peripheral vascular resistance, CO (ml/min/kg)-cardiac output
DOI: 10.6084/m9.figshare.11223302.v1
title: Stefater portal vein metabolomics CV by method

description: Internal standards and coefficient of variation for each metabolite included in the metabolomics platform used in Stefater et al., <i>Journal of the Endocrine Society, </i>2020.
DOI: 10.6084/m9.figshare.11223161
title: Morfometría Geométrica en el cráneo de Capromys pilorides

description: Base de datos de las subespecies de jutía conga, Capromys pilorides, depositadas en la colección zoológica del Insituto de Ecología y Sistemática, Cuba y que fueron escogidas como muestra para el análisis de morfometría geométrica 2D del cráneo de la especie. Se ofrece las coordenas (X,Y) de los puntos clave que definen la forma del cráneo en vista dorsal. <br>
DOI: 10.6084/m9.figshare.11224118.v2
title: Lazzaro et al_Secondary succession

description: Raw data on community matrix and on samplig design
DOI: 10.6084/m9.figshare.11231627.v3
title: FORENSIC, an online platform for fecal source identification

description: R scripts to create, train and test random forest classifiers.
DOI: 10.6084/m9.figshare.11223161.v1
title: Morfometría Geométrica en el cráneo de Capromys pilorides

description: Base de datos de las subespecies de jutía conga, Capromys pilorides, depositadas en la colección zoológica del Insituto de Ecología y Sistemática, Cuba y que fueron escogidas como muestra para el análisis de morfometría geométrica 2D del cráneo de la especie. Se ofrece las coordenas (X,Y) de los puntos clave que definen la forma del cráneo en vista dorsal. <br>
DOI: 10.6084/m9.figshare.11224118.v1
title: Raw data for the manuscript: Contrasting patterns of change in α and β taxonomic and phylogenetic diversity in the secondary succession of semi-natural grasslands in the Northern Apennines

description: Raw data on community matrix and on samplig design
DOI: 10.6084/m9.figshare.11231627.v5
title: FORENSIC, an online platform for fecal source identification

description: R scripts to create, train and test random forest classifiers.
DOI: 10.6084/m9.figshare.11231627.v4
title: FORENSIC, an online platform for fecal source identification

description: R scripts to create, train and test random forest classifiers.
DOI: 10.6084/m9.figshare.11219165
title: sweeps

description: This item contains all simulations of selective sweeps from Dan Schrider's paper comparing patterns of variation produced by hitchhiking to those produced by background selection. For more information see the manuscript (doi: TBA), and the code used to produce these simulations (https://github.com/SchriderLab/posSelVsBgs).<br>
DOI: 10.15131/shef.data.11219000
title: Independently Tunable Quad-band Antenna for Sub-6GHz 5G New Radio Applications

description: Measured error vector magnitude (EVM) performance of (a) concurrent multiband and (b) individual bands for QPSK modulated single-carrier transmission over the quad-band testbed.
DOI: 10.15131/shef.data.11219000.v1
title: Independently Tunable Quad-band Antenna for Sub-6GHz 5G New Radio Applications

description: Measured error vector magnitude (EVM) performance of (a) concurrent multiband and (b) individual bands for QPSK modulated single-carrier transmission over the quad-band testbed.
DOI: 10.6084/m9.figshare.11215067
title: CAAV_database

description: The Chieti Affective Action Video (CAAV) is a new database designed for the experimental study of emotions in psychology. The main goal of the CAAV is to provide a wide range of standardized stimuli based on two emotional dimensions: valence and arousal. The CAAV is the first database to present emotional stimuli through videos of actions filmed and developed specifically for experimental research.
DOI: 10.6084/m9.figshare.11214953
title: flyHubDFE.tgz

description: This item contains all forward simulations of background selection under Drosophila-like parameters from Dan Schrider's paper comparing patterns of variation produced by hitchhiking to those produced by background selection. For more information see the manuscript (doi: TBA), and the code used to produce these simulations (https://github.com/SchriderLab/posSelVsBgs).
DOI: 10.6084/m9.figshare.11214956
title: boykoDFE.tgz

description: This item contains all forward simulations of background selection under human-like parameters from Dan Schrider's paper comparing patterns of variation produced by hitchhiking to those produced by background selection. For more information see the manuscript (doi: TBA), and the code used to produce these simulations (https://github.com/SchriderLab/posSelVsBgs).
DOI: 10.5522/04/11214254
title: Ab initio calculations and high P-T experiments on iron, iron alloys and other materials: hcp-Fe-Si-S-C elasticity 6500 K (SQS)

description: The folder includes the elastic calculations for the hcp-Fe-Si-C alloy with the special quasirandom structure at Earth's core conditions (360 GPa and 6500 K).Elastic calculations were performed at the density functional theory level by using the Vienna Ab initio Simulation Package. Finite-temperature elastic calculations were done by using ab initio molecular dynamics. The strain–stress method was used to calculate the isothermal elastic constants.
DOI: 10.6084/m9.figshare.11214953.v1
title: flyHubDFE.tgz

description: This item contains all forward simulations of background selection under Drosophila-like parameters from Dan Schrider's paper comparing patterns of variation produced by hitchhiking to those produced by background selection. For more information see the manuscript (doi: TBA), and the code used to produce these simulations (https://github.com/SchriderLab/posSelVsBgs).
DOI: 10.6084/m9.figshare.11214956.v1
title: boykoDFE.tgz

description: This item contains all forward simulations of background selection under human-like parameters from Dan Schrider's paper comparing patterns of variation produced by hitchhiking to those produced by background selection. For more information see the manuscript (doi: TBA), and the code used to produce these simulations (https://github.com/SchriderLab/posSelVsBgs).
DOI: 10.6084/m9.figshare.11214107
title: Quite an oddity: new worldwide records of <i>Renouxia</i> (Rhodogorgonales, Rhodophyta), including <i>R. marerubra</i> sp. nov.

description: The gelatinous, calciferous red alga <i>Renouxia antillana</i> was described in 1995 based on material from Guadeloupe, French West Indies, and accommodated in a new family and order (Rhodogorgonaceae, Rhodogorgonales) along with the genus <i>Rhodogorgon</i> from Belize and Caribbean Panama. For more than 20 years, <i>Renouxia</i> has remained monotypic, with rare reports in the Caribbean and the Indo-Pacific (from Réunion Island to French Polynesia). DNA-based analyses of recently collected <i>Renouxia</i> specimens from Egypt showed that they are not conspecific with the Caribbean <i>R. antillana</i> and are described as <i>R. marerubra</i> sp. nov. Uncorrected <i>p</i>-distances between the Red Sea specimens and the generitype were 8.0% for COI, 6.5-7.3% for <i>rbc</i>L and 3.1% for UPA. Morphological and anatomical features are also presented for the newly described species and compared to its congener, with the first documented report of monoecism in the Rhodogorgonales. Besides the new record of <i>Renouxia</i> from the Red Sea, the geographic distribution of the genus is here extended with additional records from Sri Lanka, Indonesia, as well as the islands of Guam and Kosrae in the Western Pacific. The UPA phylogeny suggests that these new distribution records may also represent undescribed species, with representatives in two distinct genetic groups.
DOI: 10.5522/04/11214254.v1
title: Ab initio calculations and high P-T experiments on iron, iron alloys and other materials: hcp-Fe-Si-S-C elasticity 6500 K (SQS)

description: The folder includes the elastic calculations for the hcp-Fe-Si-C alloy with the special quasirandom structure at Earth's core conditions (360 GPa and 6500 K).Elastic calculations were performed at the density functional theory level by using the Vienna Ab initio Simulation Package. Finite-temperature elastic calculations were done by using ab initio molecular dynamics. The strain–stress method was used to calculate the isothermal elastic constants.
DOI: 10.6084/m9.figshare.11214107.v1
title: Quite an oddity: new worldwide records of <i>Renouxia</i> (Rhodogorgonales, Rhodophyta), including <i>R. marerubra</i> sp. nov.

description: The gelatinous, calciferous red alga <i>Renouxia antillana</i> was described in 1995 based on material from Guadeloupe, French West Indies, and accommodated in a new family and order (Rhodogorgonaceae, Rhodogorgonales) along with the genus <i>Rhodogorgon</i> from Belize and Caribbean Panama. For more than 20 years, <i>Renouxia</i> has remained monotypic, with rare reports in the Caribbean and the Indo-Pacific (from Réunion Island to French Polynesia). DNA-based analyses of recently collected <i>Renouxia</i> specimens from Egypt showed that they are not conspecific with the Caribbean <i>R. antillana</i> and are described as <i>R. marerubra</i> sp. nov. Uncorrected <i>p</i>-distances between the Red Sea specimens and the generitype were 8.0% for COI, 6.5-7.3% for <i>rbc</i>L and 3.1% for UPA. Morphological and anatomical features are also presented for the newly described species and compared to its congener, with the first documented report of monoecism in the Rhodogorgonales. Besides the new record of <i>Renouxia</i> from the Red Sea, the geographic distribution of the genus is here extended with additional records from Sri Lanka, Indonesia, as well as the islands of Guam and Kosrae in the Western Pacific. The UPA phylogeny suggests that these new distribution records may also represent undescribed species, with representatives in two distinct genetic groups.
DOI: 10.6084/m9.figshare.11204102
title: MZ_0073_003_Neophyllobius_glaesus_60x_legIV_right_ventral

description: <b>Species:</b> <i>Neophyllobius glaesus</i> Zmudzinski<b>Source:</b> Baltic amber<b>Deposition: </b>Geological-Paleontological Institute and Museum of the University of Hamburg, Germany, under the collection number GPIH 4995<b>Author's catalog number:</b> MZ_XXXX_003_Neophyllobius_glaesus_XXx_XXX_info<b>Microscope:</b> Nikon Eclipse Ni-U<br><b>Camera:</b> Nikon DS-Ri2<b>Image aquisition software:</b> NIS-Elements D<b>Optics:</b> CFI Apochromat NIR 60X W + DIC
DOI: 10.6084/m9.figshare.11202815
title: MZ_0072_003_Neophyllobius_glaesus_60x_legIV_right_dorsal

description: <b>Species:</b> <i>Neophyllobius glaesus</i> Zmudzinski<b>Source:</b> Baltic amber<b>Deposition: </b>Geological-Paleontological Institute and Museum of the University of Hamburg, Germany, under the collection number GPIH 4995<b>Author's catalog number:</b> MZ_XXXX_003_Neophyllobius_glaesus_XXx_XXX_info<b>Microscope:</b> Nikon Eclipse Ni-U<br><b>Camera:</b> Nikon DS-Ri2<b>Image aquisition software:</b> NIS-Elements D<b>Optics:</b> CFI Apochromat NIR 60X W + DIC
DOI: 10.6084/m9.figshare.11202815.v1
title: MZ_0072_003_Neophyllobius_glaesus_60x_legIV_right_dorsal

description: <b>Species:</b> <i>Neophyllobius glaesus</i> Zmudzinski<b>Source:</b> Baltic amber<b>Deposition: </b>Geological-Paleontological Institute and Museum of the University of Hamburg, Germany, under the collection number GPIH 4995<b>Author's catalog number:</b> MZ_XXXX_003_Neophyllobius_glaesus_XXx_XXX_info<b>Microscope:</b> Nikon Eclipse Ni-U<br><b>Camera:</b> Nikon DS-Ri2<b>Image aquisition software:</b> NIS-Elements D<b>Optics:</b> CFI Apochromat NIR 60X W + DIC
DOI: 10.6084/m9.figshare.11204102.v1
title: MZ_0073_003_Neophyllobius_glaesus_60x_legIV_right_ventral

description: <b>Species:</b> <i>Neophyllobius glaesus</i> Zmudzinski<b>Source:</b> Baltic amber<b>Deposition: </b>Geological-Paleontological Institute and Museum of the University of Hamburg, Germany, under the collection number GPIH 4995<b>Author's catalog number:</b> MZ_XXXX_003_Neophyllobius_glaesus_XXx_XXX_info<b>Microscope:</b> Nikon Eclipse Ni-U<br><b>Camera:</b> Nikon DS-Ri2<b>Image aquisition software:</b> NIS-Elements D<b>Optics:</b> CFI Apochromat NIR 60X W + DIC
DOI: 10.6084/m9.figshare.11202566
title: MZ_0071_003_Neophyllobius_glaesus_60x_legIV_left_ventral_partfour

description: <b>Species:</b> <i>Neophyllobius glaesus</i> Zmudzinski<b>Source:</b> Baltic amber<b>Deposition: </b>Geological-Paleontological Institute and Museum of the University of Hamburg, Germany, under the collection number GPIH 4995<b>Author's catalog number:</b> MZ_XXXX_003_Neophyllobius_glaesus_XXx_XXX_info<b>Microscope:</b> Nikon Eclipse Ni-U<br><b>Camera:</b> Nikon DS-Ri2<b>Image aquisition software:</b> NIS-Elements D<b>Optics:</b> CFI Apochromat NIR 60X W + DIC
DOI: 10.6084/m9.figshare.11203973.v1
title: Draft Genome Assembly of Takifugu bimaculatus

description: A draft genome assembly of <i>Takifugu bimaculatus</i>, generating using Pacbio sequencing technology, and assembled using Falcon.