cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.syvpyw
title: Occurrence Download

description: A dataset containing 579235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Specimen, Fossil, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "TaxonKey is Apis mellifera Linnaeus, 1758"
 ]
}

 The dataset includes 579235 records from 995 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0119025-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xj2aws
title: Occurrence Download

description: A dataset containing 547 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spodoptera eridania Stoll"
 ]
}

 The dataset includes 547 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056670-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-70195
title: Redemption tidings, vol. 51, nos. 1-52, 2 Jan. - 25 Dec. 1975

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.9baj99
title: Occurrence Download

description: A dataset containing 1082 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Dracocephalum austriacum L."
 ]
}

 The dataset includes 1082 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037997-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.feaa2s
title: Occurrence Download

description: A dataset containing 3374 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clytemnestra scutellata Dana, 1847"
 ]
}

 The dataset includes 3374 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115923-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-80021
title: Redemption tidings, vol. 59, nos. 1-52, 6 Jan. - 29 Dec. 1983

description: [description english/roman)] Issued weekly. "The pentecostal voice of Assemblies of God" -- subtitle.
DOI: 10.15468/dl.46am4g
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neohaustorius schmitzi Bousfield, 1965"
 ]
}

 The dataset includes 61 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126374-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sm8a2m
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anthurium martianum K.Koch & Kolb"
 ]
}

 The dataset includes 17 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038003-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-70384
title: Redemption tidings, vol. 51, nos. 1-52, 2 Jan. - 25 Dec. 1975

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.5rstvv
title: Occurrence Download

description: A dataset containing 1563 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Ophisaurus ventralis (Linnaeus, 1766)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1563 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056639-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-73866
title: Redemption tidings, vol. 53, nos. 1-52, 1 Jan. - 29 Dec. 1977

description: [description english/roman)] Issued weekly. "The vital voice of pentecost today" -- subtitle.
DOI: 10.15468/dl.zu6h7x
title: Occurrence Download

description: A dataset containing 2926656 species occurrences available in GBIF matching the query:
(Query is too complex. Can be viewed on the landing page)

 The dataset includes 2926656 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126368-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.py4my3
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phacelia inconspicua Greene"
 ]
}

 The dataset includes 29 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072082-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rnrd74
title: Occurrence Download

description: A dataset containing 26387 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pachydiplax longipennis (Burmeister, 1839)"
 ]
}

 The dataset includes 26387 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030796-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6p7eb
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potentilla oaxacana Rydb."
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189492-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wskawa
title: Occurrence Download

description: A dataset containing 163 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Antarctothoa bougainvillei (d'Orbigny, 1842)"
 ]
}

 The dataset includes 163 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001521-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5wvgqj
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Jurinea kaschgarica Iljin"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0331635-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hiogvv
title: Occurrence Download

description: A dataset containing 302 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Nothofagus dombeyi (Mirb.) Oerst."
 ]
}

 The dataset includes 302 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001521-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gbqdbp
title: Occurrence Download

description: A dataset containing 19821 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is SPF-Algae - Herbário da Universidade de São Paulo - Coleção de Algas"
 ]
}

 The dataset includes 19821 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032719-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kz8fsr
title: Occurrence Download

description: A dataset containing 2496290 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salmo trutta Linnaeus, 1758"
 ]
}

 The dataset includes 2496290 records from 609 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051193-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.iwuz2r
title: Occurrence Download

description: A dataset containing 289 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rehderodendron Hu"
 ]
}

 The dataset includes 289 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001521-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bjkmbq
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Encephalartos marunguensis Devred",
 "DecimalLatitude is greater than or equal to -90",
 "DecimalLongitude is greater than or equal to -180"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025563-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9rlkml
title: Occurrence Download

description: A dataset containing 33182 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crotophaga ani Linnaeus, 1758"
 ]
}

 The dataset includes 33182 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001522-150204170955391/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gz3n5v
title: Occurrence Download

description: A dataset containing 38395927 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "DatasetKey is EOD – eBird Observation Dataset"
 ]
}

 The dataset includes 38395927 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011693-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9imhp
title: Occurrence Download

description: A dataset containing 222 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Country is Mexico",
 "HasCoordinate is true",
 "TaxonKey is Ambystoma rivulare (Taylor, 1940)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 222 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021436-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9fq9bm
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "StateProvince is one of (fusagasuga, fusagasugá)"
 ]
}

 The dataset's 3 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008115-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uo0sbd
title: Occurrence Download

description: A dataset containing 2539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "DatasetKey is TTU Mammals Collection"
 ]
}

 The dataset includes 2539 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001522-150316153013904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rptsgm
title: Occurrence Download

description: A dataset containing 100949 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Papaver dubium L."
 ]
}

 The dataset includes 100949 records from 588 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0112370-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3fq3me
title: Occurrence Download

description: A dataset containing 1072 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psychotria subsessilis Benth."
 ]
}

 The dataset includes 1072 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189494-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zlpolq
title: Occurrence Download

description: A dataset containing 11276 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Korea (Democratic People’s Republic of)"
 ]
}

 The dataset includes 11276 records from 167 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001522-150504100648427/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13824001
title: micrurus_diastema_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.13824002
title: micrurus_diastema_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.13824180
title: vireo_flavifrons_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.13824181
title: vireo_flavifrons_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.13824182
title: vireo_pallens_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.13824183
title: vireo_pallens_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.13771567
title: Generated Metastatic CT 3D Femurs with lesions segmentation 1/3

description: This file regroups the 5675 synthetic femurs used and described in the paper: "Enhanced segmentation of femoral bone metastasis in CT scans of patients using synthetic data generation with 3D diffusion models" Saillard et al. 

Three repositories are needed to form the full archive. When all are downloaded, they can be deflated with the following bash command : 

cat Generated_3DCT_Metastatic_Femurs.tar.gz* | tar faxv -

 

This is the first part (1/3)

part 2/3:  10.5281/zenodo.13824177 

part 3/3:  10.5281/zenodo.13824179  

 

Generated CT Scans are organized in two directories: one for files generated with DDPM this one) and one without DDPM.

├── Generated_3DCT_Metastatic_Femurs_with_DDPM │   ├── img│   ├── lbl│   └── msk

└── Generated_3DCT_Metastatic_Femurs_NO_DDPM    ├── img    ├── lbl    └── msk

The content of each directory is as follows: 



img : the generated 3D CT scan (nii.gz format) from the 26 healthy femurs

lbl : the lesions segmentation (nii.gz format) of the generated 3D CT scan

msk : the segmentations of the 26 healthy femurs (nii.gz)


A given filename corresponds to in img and lbl directories :



./lbl/MEK03les0MEK14.nii.gz is the lesions segmentation of ./img/MEK03les0MEK14.nii.gz.

./lbl/MEK03les197MEK28.nii.gz is the lesions segmentation of  ./img/MEK03les197MEK28.nii.gz


But in msk, the corresponding femur mask for these examples is ./msk/MEK03.nii.gz
DOI: 10.5281/zenodo.13771568
title: Generated Metastatic CT 3D Femurs with lesions segmentation 1/3

description: This file regroups the 5675 synthetic femurs used and described in the paper: "Enhanced segmentation of femoral bone metastasis in CT scans of patients using synthetic data generation with 3D diffusion models" Saillard et al. 

Three repositories are needed to form the full archive. When all are downloaded, they can be deflated with the following bash command : 

cat Generated_3DCT_Metastatic_Femurs.tar.gz* | tar faxv -

 

This is the first part (1/3)

part 2/3:  10.5281/zenodo.13824177 

part 3/3:  10.5281/zenodo.13824179  

 

Generated CT Scans are organized in two directories: one for files generated with DDPM this one) and one without DDPM.

├── Generated_3DCT_Metastatic_Femurs_with_DDPM │   ├── img│   ├── lbl│   └── msk

└── Generated_3DCT_Metastatic_Femurs_NO_DDPM    ├── img    ├── lbl    └── msk

The content of each directory is as follows: 



img : the generated 3D CT scan (nii.gz format) from the 26 healthy femurs

lbl : the lesions segmentation (nii.gz format) of the generated 3D CT scan

msk : the segmentations of the 26 healthy femurs (nii.gz)


A given filename corresponds to in img and lbl directories :



./lbl/MEK03les0MEK14.nii.gz is the lesions segmentation of ./img/MEK03les0MEK14.nii.gz.

./lbl/MEK03les197MEK28.nii.gz is the lesions segmentation of  ./img/MEK03les197MEK28.nii.gz


But in msk, the corresponding femur mask for these examples is ./msk/MEK03.nii.gz
DOI: 10.15468/dl.wavv59
title: Occurrence Download

description: A dataset containing 98100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-116.07858 30.13273,-115.27687 30.13273,-115.27687 30.57392,-116.07858 30.57392,-116.07858 30.13273))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 98100 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025566-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13824189
title: vireo_philadelphicus_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.13824190
title: vireo_philadelphicus_zanfona_1.fasta.gz
DOI: 10.5517/ccdc.csd.cc2h2d22
title: CCDC 2296203: Experimental Crystal Structure Determination

description: Related Article: Muthukumari Muthaiyan, Fayaz T. K. S, Gowtham Kenguva, Aditya Kumar Prajapati, Rambabu Dandela, Vladimir V. Chernyshev, Palash Sanphui|2024|Cryst.Growth Des.|24|7617|doi:10.1021/acs.cgd.4c00855
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.13824194
title: imantodes_gemmistratus_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.13824195
title: imantodes_gemmistratus_zanfona_1.fasta.gz
DOI: 10.5517/ccdc.csd.cc2jdp1p
title: CCDC 2335882: Experimental Crystal Structure Determination

description: Related Article: Muthukumari Muthaiyan, Fayaz T. K. S, Gowtham Kenguva, Aditya Kumar Prajapati, Rambabu Dandela, Vladimir V. Chernyshev, Palash Sanphui|2024|Cryst.Growth Des.|24|7617|doi:10.1021/acs.cgd.4c00855
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jh9bp
title: CCDC 2338402: Experimental Crystal Structure Determination

description: Related Article: Neda Heydari, Rahman Bikas, Dimitris A. Kalofolias, Tadeusz Lis|2024|Polyhedron|264|117207|doi:10.1016/j.poly.2024.117207
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jk037
title: CCDC 2340038: Experimental Crystal Structure Determination

description: Related Article: Saikumar Banda, Lasse Johannßen, Alice Voss, Alexander Villinger, Gudrun Wenzel, Jens Holz, Malte Brasholz|2024|J.Org.Chem.|89|13263|doi:10.1021/acs.joc.4c01402
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jk06b
title: CCDC 2340041: Experimental Crystal Structure Determination

description: Related Article: Saikumar Banda, Lasse Johannßen, Alice Voss, Alexander Villinger, Gudrun Wenzel, Jens Holz, Malte Brasholz|2024|J.Org.Chem.|89|13263|doi:10.1021/acs.joc.4c01402
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jk0dj
title: CCDC 2340047: Experimental Crystal Structure Determination

description: Related Article: Saikumar Banda, Lasse Johannßen, Alice Voss, Alexander Villinger, Gudrun Wenzel, Jens Holz, Malte Brasholz|2024|J.Org.Chem.|89|13263|doi:10.1021/acs.joc.4c01402
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jk0hm
title: CCDC 2340050: Experimental Crystal Structure Determination

description: Related Article: Saikumar Banda, Lasse Johannßen, Alice Voss, Alexander Villinger, Gudrun Wenzel, Jens Holz, Malte Brasholz|2024|J.Org.Chem.|89|13263|doi:10.1021/acs.joc.4c01402
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jv7xk
title: CCDC 2348929: Experimental Crystal Structure Determination

description: Related Article: Muthukumari Muthaiyan, Fayaz T. K. S, Gowtham Kenguva, Aditya Kumar Prajapati, Rambabu Dandela, Vladimir V. Chernyshev, Palash Sanphui|2024|Cryst.Growth Des.|24|7617|doi:10.1021/acs.cgd.4c00855
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.