cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8051573.v1
title: Genetics of Neurocognitive Complications in survivors of childhood ALL_list of polymorphisms.docx

description: We studied the role of genetic factors in neurocognitive impairments as well as in anxiety and depression by interrogating the relationship between above mentioned complications and genotypic profiling of 459 candidate genes obtained through whole exome sequencing (WES) of childhood acute lymphoblastic leukemia (ALL) survivors.
DOI: 10.6084/m9.figshare.8051195.v1
title: Fuzzy optimization model for electric vehicle routing problem with time windows and recharging stations

description: This is the experimental data of the manuscript entitled "fuzzy optimization model for electric vehicle routing problem with time windows and recharging stations". All data are saved in the file with txt format.
DOI: 10.6084/m9.figshare.8051147
title: Additional file 3: of An annual cycle of gene regulation in the red-legged salamander mental gland: from hypertrophy to expression of rapidly evolving pheromones

description: Assembled gene data. Spreadsheet with Trinity assembled genes, associated annotations, and gene expression estimates over the time series. (XLSX 57561 kb)
DOI: 10.6084/m9.figshare.8051147.v1
title: Additional file 3: of An annual cycle of gene regulation in the red-legged salamander mental gland: from hypertrophy to expression of rapidly evolving pheromones

description: Assembled gene data. Spreadsheet with Trinity assembled genes, associated annotations, and gene expression estimates over the time series. (XLSX 57561 kb)
DOI: 10.6084/m9.figshare.8051126
title: Additional file 5: of Targeted capture-based NGS is superior to multiplex PCR-based NGS for hereditary BRCA1 and BRCA2 gene analysis in FFPE tumor samples

description: Excel Spreadsheet 1 Sample-specific panelcn.MOPS output at BRCA1 and BRCA2 target regions generated by the targeted capture-based NGS approach applied to DNA originating from blood and FFPE samples from all patients (P01 to P33) compared to array CGH results (if available). (XLSX 1143 kb)
DOI: 10.6084/m9.figshare.8051129
title: Additional file 1: of Transcriptome analysis of egg viability in rainbow trout, Oncorhynchus mykiss

description: Table S1. Differentially expressed transcripts among low-, medium- and high-quality eggs identified by DESeq2. Table S2. Mean and log2FC of normalized mitochondrial DET reads. Table S3. Quality analyses for RNAs treated with DNase and submitted for RNA sequencing. Table S4. Overview of RNA-seq read alignments from the libraries constructed with defective rRNA removal kit. Table S5. Additional gene transcripts used as reference. Table S6. Primers used in real-time quantitative PCR. Table S7. Gene name abbreviations. (XLSX 506 kb)
DOI: 10.6084/m9.figshare.8051126.v1
title: Additional file 5: of Targeted capture-based NGS is superior to multiplex PCR-based NGS for hereditary BRCA1 and BRCA2 gene analysis in FFPE tumor samples

description: Excel Spreadsheet 1 Sample-specific panelcn.MOPS output at BRCA1 and BRCA2 target regions generated by the targeted capture-based NGS approach applied to DNA originating from blood and FFPE samples from all patients (P01 to P33) compared to array CGH results (if available). (XLSX 1143 kb)
DOI: 10.6084/m9.figshare.8051129.v1
title: Additional file 1: of Transcriptome analysis of egg viability in rainbow trout, Oncorhynchus mykiss

description: Table S1. Differentially expressed transcripts among low-, medium- and high-quality eggs identified by DESeq2. Table S2. Mean and log2FC of normalized mitochondrial DET reads. Table S3. Quality analyses for RNAs treated with DNase and submitted for RNA sequencing. Table S4. Overview of RNA-seq read alignments from the libraries constructed with defective rRNA removal kit. Table S5. Additional gene transcripts used as reference. Table S6. Primers used in real-time quantitative PCR. Table S7. Gene name abbreviations. (XLSX 506 kb)
DOI: 10.6084/m9.figshare.8051114
title: Additional file 4: of Targeted capture-based NGS is superior to multiplex PCR-based NGS for hereditary BRCA1 and BRCA2 gene analysis in FFPE tumor samples

description: Table S3 Pathogenic variants and CNVs in FFPE samples from all patients (P01 to P33). (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8051114.v1
title: Additional file 4: of Targeted capture-based NGS is superior to multiplex PCR-based NGS for hereditary BRCA1 and BRCA2 gene analysis in FFPE tumor samples

description: Table S3 Pathogenic variants and CNVs in FFPE samples from all patients (P01 to P33). (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8051108
title: Additional file 3: of Targeted capture-based NGS is superior to multiplex PCR-based NGS for hereditary BRCA1 and BRCA2 gene analysis in FFPE tumor samples

description: Table S2 Pathogenic BRCA1/2 variants in investigated blood and FFPE samples. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8051108.v1
title: Additional file 3: of Targeted capture-based NGS is superior to multiplex PCR-based NGS for hereditary BRCA1 and BRCA2 gene analysis in FFPE tumor samples

description: Table S2 Pathogenic BRCA1/2 variants in investigated blood and FFPE samples. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8051099
title: Additional file 2: of Targeted capture-based NGS is superior to multiplex PCR-based NGS for hereditary BRCA1 and BRCA2 gene analysis in FFPE tumor samples

description: Table S1 Summary of control (K01 to K05) and patient (P01 to P33) samples used for comparison of the performance of targeted capture-based NGS to multiplex PCR-based NGS. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8051099.v1
title: Additional file 2: of Targeted capture-based NGS is superior to multiplex PCR-based NGS for hereditary BRCA1 and BRCA2 gene analysis in FFPE tumor samples

description: Table S1 Summary of control (K01 to K05) and patient (P01 to P33) samples used for comparison of the performance of targeted capture-based NGS to multiplex PCR-based NGS. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8051030
title: Additional file 3: of Genome-wide association analysis for fumonisin content in maize kernels

description: Table S2.Â Names of the panel inbreds along with their accession identifications at the North Central Regional Plant Introduction Station (NCRPIS). (XLS 40 kb)
DOI: 10.6084/m9.figshare.8051030.v1
title: Additional file 3: of Genome-wide association analysis for fumonisin content in maize kernels

description: Table S2.Â Names of the panel inbreds along with their accession identifications at the North Central Regional Plant Introduction Station (NCRPIS). (XLS 40 kb)
DOI: 10.6084/m9.figshare.8051021
title: Additional file 2: of Genome-wide association analysis for fumonisin content in maize kernels

description: Table S1. Candidate Genes for each QTL. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.8051021.v1
title: Additional file 2: of Genome-wide association analysis for fumonisin content in maize kernels

description: Table S1. Candidate Genes for each QTL. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.8050979
title: Additional file 7: of Plant trichomes and a single gene GLABRA1 contribute to insect community composition on field-grown Arabidopsis thaliana

description: R source code for statistical analyses (TXT 10 kb)
DOI: 10.6084/m9.figshare.8050979.v1
title: Additional file 7: of Plant trichomes and a single gene GLABRA1 contribute to insect community composition on field-grown Arabidopsis thaliana

description: R source code for statistical analyses (TXT 10 kb)
DOI: 10.6084/m9.figshare.8050973
title: Additional file 6: of Plant trichomes and a single gene GLABRA1 contribute to insect community composition on field-grown Arabidopsis thaliana

description: Effects of trichome density, presence of flowering stem and initial plant size on insect abundance and community composition in a comparison between glabrous mutants and their parental accessions. Standardized coefficient (Coef.), standard error (SE), t-value, and FDR-corrected P-values are shown for each explanatory variable. Bold values highlight significant effects at Pfdrâ
DOI: 10.6084/m9.figshare.12870002
title: R0191_20170925a_videos

description: Rat 0191, skilled reaching data collected on 9/25/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.8050967
title: Additional file 5: of Plant trichomes and a single gene GLABRA1 contribute to insect community composition on field-grown Arabidopsis thaliana

description: Insect abundance data. (XLS 137 kb)
DOI: 10.6084/m9.figshare.8050973.v1
title: Additional file 6: of Plant trichomes and a single gene GLABRA1 contribute to insect community composition on field-grown Arabidopsis thaliana

description: Effects of trichome density, presence of flowering stem and initial plant size on insect abundance and community composition in a comparison between glabrous mutants and their parental accessions. Standardized coefficient (Coef.), standard error (SE), t-value, and FDR-corrected P-values are shown for each explanatory variable. Bold values highlight significant effects at Pfdrâ
DOI: 10.6084/m9.figshare.8050967.v1
title: Additional file 5: of Plant trichomes and a single gene GLABRA1 contribute to insect community composition on field-grown Arabidopsis thaliana

description: Insect abundance data. (XLS 137 kb)
DOI: 10.6084/m9.figshare.8050961
title: Additional file 4: of Plant trichomes and a single gene GLABRA1 contribute to insect community composition on field-grown Arabidopsis thaliana

description: Effects of trichome density, the first and second principal component (PC1 and PC2) of aliphatic glucosinolates (GSLs), presence of flowering stems and initial plant sizes on insect abundance and community composition for 17 natural accessions of Arabidopsis thaliana. Standardized coefficient (Coef.), standard error (SE), t-value, and FDR-corrected P-values are shown for each explanatory variable from Zurich, Switzerland and Otsu, Japan. Bold values highlight significant effects at Pfdrâ
DOI: 10.6084/m9.figshare.8050961.v1
title: Additional file 4: of Plant trichomes and a single gene GLABRA1 contribute to insect community composition on field-grown Arabidopsis thaliana

description: Effects of trichome density, the first and second principal component (PC1 and PC2) of aliphatic glucosinolates (GSLs), presence of flowering stems and initial plant sizes on insect abundance and community composition for 17 natural accessions of Arabidopsis thaliana. Standardized coefficient (Coef.), standard error (SE), t-value, and FDR-corrected P-values are shown for each explanatory variable from Zurich, Switzerland and Otsu, Japan. Bold values highlight significant effects at Pfdrâ
DOI: 10.6084/m9.figshare.8050949
title: Additional file 3: of Plant trichomes and a single gene GLABRA1 contribute to insect community composition on field-grown Arabidopsis thaliana

description: Likelihood ratio tests for estimating broad-sense heritability H2. Likelihood ratio, LR-χ2, was tested by comparing the models with and without a random effect of the accession ID. P-values were based on a χ2 distribution with one degree of freedom and corrected by false discovery rate (FDR) [68]. Bold values indicate significant H2 at Pfdr
DOI: 10.6084/m9.figshare.8050949.v1
title: Additional file 3: of Plant trichomes and a single gene GLABRA1 contribute to insect community composition on field-grown Arabidopsis thaliana

description: Likelihood ratio tests for estimating broad-sense heritability H2. Likelihood ratio, LR-χ2, was tested by comparing the models with and without a random effect of the accession ID. P-values were based on a χ2 distribution with one degree of freedom and corrected by false discovery rate (FDR) [68]. Bold values indicate significant H2 at Pfdr
DOI: 10.6084/m9.figshare.8050910
title: Additional file 4: of The antiplaque/anticariogenic efficacy of Salvadora persica (Miswak) mouthrinse in comparison to that of chlorhexidine: a systematic review and meta-analysis

description: Table S4. The inclusion and exclusion criteria of each study. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.8050901
title: Additional file 3: of The antiplaque/anticariogenic efficacy of Salvadora persica (Miswak) mouthrinse in comparison to that of chlorhexidine: a systematic review and meta-analysis

description: Table S3. Characteristic of the included study; type of study, date, location, age group, sample size, frequency of intervention, duration, plaque index system used, means and standard deviations, amount and percentage of intervention, and P value. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.8050910.v1
title: Additional file 4: of The antiplaque/anticariogenic efficacy of Salvadora persica (Miswak) mouthrinse in comparison to that of chlorhexidine: a systematic review and meta-analysis

description: Table S4. The inclusion and exclusion criteria of each study. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.8050901.v1
title: Additional file 3: of The antiplaque/anticariogenic efficacy of Salvadora persica (Miswak) mouthrinse in comparison to that of chlorhexidine: a systematic review and meta-analysis

description: Table S3. Characteristic of the included study; type of study, date, location, age group, sample size, frequency of intervention, duration, plaque index system used, means and standard deviations, amount and percentage of intervention, and P value. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.8050895
title: Additional file 2: of The antiplaque/anticariogenic efficacy of Salvadora persica (Miswak) mouthrinse in comparison to that of chlorhexidine: a systematic review and meta-analysis

description: Table S2. Risk of bias assessment according to the modified Cochrane Collaboration tool for randomized controlled trials. The details of the risk of bias assessment along with explanation and comments. Assessments were done according to five main domains: selection bias, performance bias, attrition bias, reporting bias, and other sources of bias. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.8050886
title: Additional file 1: of The antiplaque/anticariogenic efficacy of Salvadora persica (Miswak) mouthrinse in comparison to that of chlorhexidine: a systematic review and meta-analysis

description: Table S1. Quality assessment according to CONSORT (2010) checklist. The scale measured two items: methods and results, which included the trial design, participants, participant flow, interventions, outcomes, sample size, randomization, blinding, recruitment, baseline data, numbers analyzed, ancillary analyses, and harms. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.8050895.v1
title: Additional file 2: of The antiplaque/anticariogenic efficacy of Salvadora persica (Miswak) mouthrinse in comparison to that of chlorhexidine: a systematic review and meta-analysis

description: Table S2. Risk of bias assessment according to the modified Cochrane Collaboration tool for randomized controlled trials. The details of the risk of bias assessment along with explanation and comments. Assessments were done according to five main domains: selection bias, performance bias, attrition bias, reporting bias, and other sources of bias. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.8050886.v1
title: Additional file 1: of The antiplaque/anticariogenic efficacy of Salvadora persica (Miswak) mouthrinse in comparison to that of chlorhexidine: a systematic review and meta-analysis

description: Table S1. Quality assessment according to CONSORT (2010) checklist. The scale measured two items: methods and results, which included the trial design, participants, participant flow, interventions, outcomes, sample size, randomization, blinding, recruitment, baseline data, numbers analyzed, ancillary analyses, and harms. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.8050844
title: Additional file 6: of Loss of Msh2 and a single-radiation hit induce common, genome-wide, and persistent epigenetic changes in the intestine

description: Results of the GO-analysis for Set1 and Set2 genes. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.8050844.v1
title: Additional file 6: of Loss of Msh2 and a single-radiation hit induce common, genome-wide, and persistent epigenetic changes in the intestine

description: Results of the GO-analysis for Set1 and Set2 genes. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.8050811
title: Additional file 1: of Loss of Msh2 and a single-radiation hit induce common, genome-wide, and persistent epigenetic changes in the intestine

description: Primer sequences. List of all primers used in the study. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.8050805
title: Additional file 4: of Human transposons are an abundant supply of transcription factor binding sites and promoter activities in breast cancer cell lines

description: Supplementary Tables: contains supplementary tables referenced in the main manuscript (CSV 2 kb)
DOI: 10.6084/m9.figshare.8050811.v1
title: Additional file 1: of Loss of Msh2 and a single-radiation hit induce common, genome-wide, and persistent epigenetic changes in the intestine

description: Primer sequences. List of all primers used in the study. (XLSX 10Â kb)
DOI: 10.17632/4rj7k22wh6.3
title: Data for: From deforestation to afforestation: Effect of slopeland use policies on land use/cover change in Taiwan

description: slopeland land-use change in Taiwan
DOI: 10.6084/m9.figshare.8050802
title: Additional file 10: of Loss of Msh2 and a single-radiation hit induce common, genome-wide, and persistent epigenetic changes in the intestine

description: Modification profiles of human genes. The list includes those genes that show a modification in at least one of the lysines K4, K27 or K36 of histone 3 only. (XLSX 3040Â kb)
DOI: 10.17632/8xbd6394z7.5
title: Data for: Patterns of diversity change for forest vegetation across different climatic zones - a compound habitat gradient analysis approach

description: It provides ecological data of forest communities in different climatic regions of China, which is helpful to understand the forest distribution and construction law in China.
DOI: 10.17632/pyxd8t5js5.3
title: Data for: From deforestation to afforestation: Effect of slopeland use policies on land use/cover change in Taiwan

description: This data contains SPSS and GIS files, which regards the information of slopland in Taiwan.
DOI: 10.6084/m9.figshare.8050805.v1
title: Additional file 4: of Human transposons are an abundant supply of transcription factor binding sites and promoter activities in breast cancer cell lines

description: Supplementary Tables: contains supplementary tables referenced in the main manuscript (CSV 2 kb)
DOI: 10.6084/m9.figshare.8050796
title: Additional file 3: of Human transposons are an abundant supply of transcription factor binding sites and promoter activities in breast cancer cell lines

description: TEs with putative promoter activity: contains the list of genomic locations for TEs with putative promoter activity in breast cancer (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8050802.v1
title: Additional file 10: of Loss of Msh2 and a single-radiation hit induce common, genome-wide, and persistent epigenetic changes in the intestine

description: Modification profiles of human genes. The list includes those genes that show a modification in at least one of the lysines K4, K27 or K36 of histone 3 only. (XLSX 3040Â kb)
DOI: 10.6084/m9.figshare.8050796.v1
title: Additional file 3: of Human transposons are an abundant supply of transcription factor binding sites and promoter activities in breast cancer cell lines

description: TEs with putative promoter activity: contains the list of genomic locations for TEs with putative promoter activity in breast cancer (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8050775
title: Additional file 8: of Metaproteome analysis reveals that syntrophy, competition, and phage-host interaction shape microbial communities in biogas plants

description: Table S6. Overview about all antimicrobial peptides and proteins metaproteins. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8050775.v1
title: Additional file 8: of Metaproteome analysis reveals that syntrophy, competition, and phage-host interaction shape microbial communities in biogas plants

description: Table S6. Overview about all antimicrobial peptides and proteins metaproteins. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8050763
title: Additional file 6: of Metaproteome analysis reveals that syntrophy, competition, and phage-host interaction shape microbial communities in biogas plants

description: Table S4. Abundance of microbial key families, phages and, metaproteins related to microbial immune response. This excel sheet contains the detailed grouping of all metaproteins by their families as well as by their belonging to phages, and microbial immune response. It was the basis for Additional file 7: Table S5. (XLSX 18377 kb)
DOI: 10.6084/m9.figshare.8050763.v1
title: Additional file 6: of Metaproteome analysis reveals that syntrophy, competition, and phage-host interaction shape microbial communities in biogas plants

description: Table S4. Abundance of microbial key families, phages and, metaproteins related to microbial immune response. This excel sheet contains the detailed grouping of all metaproteins by their families as well as by their belonging to phages, and microbial immune response. It was the basis for Additional file 7: Table S5. (XLSX 18377 kb)
DOI: 10.6084/m9.figshare.8050751
title: Additional file 5: of Metaproteome analysis reveals that syntrophy, competition, and phage-host interaction shape microbial communities in biogas plants

description: Table S3. Detailed assignment of microbial metaproteins and their role in biomass degradation focusing on A_Hydrolysis, B_Substrate_Uptake, C_Fermentation, D_AA_Metabolism, and E_Methanogenese. Metaproteins were grouped by EC or KO number, respectively, in the case of B_Substrate_Uptake. For the assignment of metaproteins to B_fermentation, archaea were excluded and for E_Methanogesis only archaea were considered. (XLSX 21299 kb)
DOI: 10.6084/m9.figshare.8050751.v1
title: Additional file 5: of Metaproteome analysis reveals that syntrophy, competition, and phage-host interaction shape microbial communities in biogas plants

description: Table S3. Detailed assignment of microbial metaproteins and their role in biomass degradation focusing on A_Hydrolysis, B_Substrate_Uptake, C_Fermentation, D_AA_Metabolism, and E_Methanogenese. Metaproteins were grouped by EC or KO number, respectively, in the case of B_Substrate_Uptake. For the assignment of metaproteins to B_fermentation, archaea were excluded and for E_Methanogesis only archaea were considered. (XLSX 21299 kb)
DOI: 10.6084/m9.figshare.8050742
title: Additional file 4: of Metaproteome analysis reveals that syntrophy, competition, and phage-host interaction shape microbial communities in biogas plants

description: Table S2. Input files for chord diagram. (XLSX 101 kb)
DOI: 10.6084/m9.figshare.8050733
title: Additional file 2: of Metaproteome analysis reveals that syntrophy, competition, and phage-host interaction shape microbial communities in biogas plants

description: Table S1. List of identifications. Worksheet S1: List of all identified metaproteins. Worksheet S2: List of all identified microbial metaproteins (archaea and bacteria). Worksheet S3: List of all superkingdoms, Worksheet S4: List of all identified microbial families (archaea and bacteria). Worksheet S5: List of all identified biological processes. (XLSX 9006 kb)
DOI: 10.6084/m9.figshare.8050742.v1
title: Additional file 4: of Metaproteome analysis reveals that syntrophy, competition, and phage-host interaction shape microbial communities in biogas plants

description: Table S2. Input files for chord diagram. (XLSX 101 kb)
DOI: 10.6084/m9.figshare.8050733.v1
title: Additional file 2: of Metaproteome analysis reveals that syntrophy, competition, and phage-host interaction shape microbial communities in biogas plants

description: Table S1. List of identifications. Worksheet S1: List of all identified metaproteins. Worksheet S2: List of all identified microbial metaproteins (archaea and bacteria). Worksheet S3: List of all superkingdoms, Worksheet S4: List of all identified microbial families (archaea and bacteria). Worksheet S5: List of all identified biological processes. (XLSX 9006 kb)