cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4231/0yam-9t87
title: A data assimilation method for analysis of cavitation bubble dynamics

description: &lt;p&gt;The data provided in this publication was used to introduce a novel data assimilation-based technique to model the cavitation bubble dynamics (See &lt;a href="https://rdcu.be/cip12"&gt;https://rdcu.be/cip12&lt;/a&gt;).&lt;/p&gt;

&lt;p&gt;The original or modified Rayleigh Plesset equation (RPE) is often used to analyze cavitation bubble dynamics. The prediction accuracy of these equations is governed by the initial values of the physical parameters. However, even for higher fidelity models, deviations from experimental measurements are observed due to the models&#39; underlying assumptions. Here, we present a novel state-observer data-assimilation technique designed to fuse time-resolved cavitation bubble diameter measurements with a governing model to yield enhanced Spatio-temporal prediction of the cavitation bubble dynamics. This technique places an observer variable in the original or modified RPE and uses a proportional-integral-derivative (PID) control law on the difference between the predicted and measured cavitation bubble diameter. The data-assimilated modeling most accurately estimates the bubble diameter and far-field pressure as the deviation of bubble diameter and far-field pressure predictions from measurements decrease by up to 90% and 60%, respectively. Although the assimilated model is not a substitute for high fidelity models, this technique overcomes the inherent model assumptions and makes the model&rsquo;s outputs more robust with respect to the physical parameters&#39; initial values.  &lt;/p&gt;

&lt;p&gt; &lt;/p&gt;
description: Here, we present a novel state-observer data-assimilation technique designed to fuse time-resolved cavitation bubble diameter measurements with a governing model to yield enhanced Spatio-temporal prediction of the cavitation bubble dynamics.
DOI: 10.4231/j9rz-qf79
title: The dual benefits of synchronized mating signals in a Japanese treefrog

description: &lt;p&gt;In dense mating aggregations, such as leks and choruses, acoustic signals produced by competing male conspecifics often overlap in time. When signals overlap at a fine temporal scale, either completely or partially, the ability of females to discriminate between individual signals is reduced. Yet, despite this cost, males of some species produce calls that closely follow those of conspecifics, synchronizing signal production by deliberately overlapping their signals. Here, we investigate two non-mutually exclusive hypotheses of synchronized mating signals in a Japanese stream-breeding treefrog (Buergeria japonica): 1) increased female attraction to the chorus through acoustic constructive interference (the beacon effect hypothesis) and 2) reduced attraction of eavesdropping predators through perceptual manipulation (the eavesdropper avoidance hypothesis). Our results from field playback experiments on female frogs and eavesdropping micropredators (midges and mosquitoes) support both hypotheses. Signal transmission and female phonotaxis experiments suggest that synchronized calls are more attractive to females at a distance than unsynchronized calls. At the chorus, however, eavesdroppers are less attracted to calls that closely follow an initial call, while female attraction to individual signals is not affected. Therefore, synchronized signalling likely benefits male B. japonica by both increasing attraction of females to the chorus and reducing eavesdropper attacks. These findings highlight the complex nature of signal synchronization and how multiple interacting selective pressures likely promoted the evolution and maintenance of this behaviour.&lt;/p&gt;
description: We investigated two non-mutually exclusive hypotheses: 1) beacon effect and 2) eavesdropper avoidance. We found that synchronized signalling both increasing attraction of females to the chorus and reducing eavesdropper attacks.
DOI: 10.4231/yn6b-9f55
title: Comparison of Old Field And Restoration at Salomon Farm Park, Indiana

description: &lt;p&gt;The main objective of plant community restoration is often to return an ecosystem to its historic successional trajectory. It can also be the result of other restoration, as was the case at Salomon Farm Park, Indiana where a ditch was moved to add sinuosity and reduce flooding. This construction activity created in a field being heavily disturbed and, subsequently, native plant seeds were sown in 2016. In 2018, we surveyed the restored field and an adjacent control field without disturbance. Species richness did not differ between the fields, but non-native and overall species diversity was greater in the restoration field. In the control field, abundance was dominated by &lt;em&gt;Poa pratensis &lt;/em&gt;accounting for 74% of the individuals. In the restoration field, abundance was much more evenly distributed between the species. Less than a third of the species were shared between the restoration field and the control, and even fewer species were shared between the applied seed mix and the restoration field. The restoration effort at Salomon Farm Park produced disturbance that facilitated colonization of plants from surrounding communities, including increased evenness in non-native species. Sowing seeds may be effective in establishing plant communities in certain ecosystems, but allowing time for colonization may be just as important.&lt;/p&gt;
description: Comparison of plant communities in two adjacent fields - restoration and old field. Plant surveys conducted in 2018 following restoration in 2016.
DOI: 10.4231/vhmg-gq38
title: Ecological Plant Surveys of Little Wabash River Nature Preserve, Indiana

description: &lt;p&gt;Little Wabash River Nature Preserve (LWRNP) is a 14.2 ha property of important geological terrain associated with the Wisconsin glaciation age Maumee Torrent. The flow of water carved out a geographically unique passage in the landscape, the variance in terrain creating subsequent diversity of flora. The site is protected by ACRES Land Trust within the Little River watershed. To ensure a better understanding of the community structure, ecological and floristic surveys were conducted between April and October of 2019. The ecological survey consisted of 48 quadrats along 7 transects visited in May, July, and September, and included identifying understory, midstory, and overstory plant species. Additionally, we measured PAR, canopy cover, litter depth, and soil moisture in each quadrat. The floristic survey was done to catalogue all species and conducted in a non-random meander between the set transects, in order to ensure inclusion of community types and terrain gradation potentially omitted in the ecological survey. At the quadrat level, understory species richness was significantly related to the canopy cover for all three surveyed months. However, understory species diversity was related to the litter depth in May, and canopy cover in July and September. As expected for the region, swamp white oak was a dominant overstory species, especially in the lower areas of the property. Unexpected was the dominance of black walnut throughout large areas of the property &ndash; occurring in the greatest proportion of quadrats and at the greatest density. LWRNP is an excellent example of the diversity that can exist in a small, protected forest. While there are some common invasive species in need of control within the property, there are more interesting native species as well, adding diversity and interest to the community. Further management may be necessary by ACRES Land Trust to ensure continued succession dominated by native species.&lt;/p&gt;
description: Plot based plant survey of Little Wabash River Nature Preserve and environmental characteristics.
DOI: 10.5281/zenodo.17910126
title: When flowers turn red: Pathogen-induced flavonoid–anthocyanin biosynthesis in Chrysanthemum seticuspe confers resistance to Botrytis cinerea

description: Project Title: When flowers turn red: Pathogen-induced flavonoid–anthocyanin biosynthesis in Chrysanthemum seticuspe confers resistance to Botrytis cinerea

Description: This Zenodo record contains processed metabolomics outputs used in the study above (feature tables, molecular networking exports, annotations, and MEANtools outputs). These files support the figures and statistical analyses reported in the manuscript. 

Data Folders:





mzmine_v4.3.3_output/ — MZmine project outputs (feature tables, batchfiles, annoatation file and quantification files used for downstream analysis).




FBMNstats_output/ — FBMN statistics, data prep files for seperate organs, and significant metabolite list.




gnps2_metadata_graphml/ — GNPS2 exports for networks and metadata (e.g., .graphml).




SIRIUS6.1_output/ — SIRIUS project file and exported annotations, including a final combined annotation table.




MEANtools_output/ — MEANtools multi-omics integration outputs linking LC–MS metabolite features with transcript features, plus pathway inference results. Includes Herald and paveWays outputs:





Herald output (heraldPathways.py): raw pathway prediction tables (CSV), including predicted reactions, predicted substrate→product links (virtual molecules), and structure lists.




paveWays output (paveWays.py): filtered pathway summaries and visualization outputs derived from Herald predictions (e.g., pathway/structure graphics and accompanying summary tables).




Also includes interactive HTML gene–metabolite network visualizations highlighting mycosinol-associated metabolite features and linked genes (hover tooltips show IDs/annotations and association scores).
DOI: 10.5281/zenodo.17910125
title: When flowers turn red: Pathogen-induced flavonoid–anthocyanin biosynthesis in Chrysanthemum seticuspe confers resistance to Botrytis cinerea

description: Project Title: When flowers turn red: Pathogen-induced flavonoid–anthocyanin biosynthesis in Chrysanthemum seticuspe confers resistance to Botrytis cinerea

Description: This Zenodo record contains processed metabolomics outputs used in the study above (feature tables, molecular networking exports, annotations, and MEANtools outputs). These files support the figures and statistical analyses reported in the manuscript. 

Data Folders:





mzmine_v4.3.3_output/ — MZmine project outputs (feature tables, batchfiles, annoatation file and quantification files used for downstream analysis).




FBMNstats_output/ — FBMN statistics, data prep files for seperate organs, and significant metabolite list.




gnps2_metadata_graphml/ — GNPS2 exports for networks and metadata (e.g., .graphml).




SIRIUS6.1_output/ — SIRIUS project file and exported annotations, including a final combined annotation table.




MEANtools_output/ — MEANtools multi-omics integration outputs linking LC–MS metabolite features with transcript features, plus pathway inference results. Includes Herald and paveWays outputs:





Herald output (heraldPathways.py): raw pathway prediction tables (CSV), including predicted reactions, predicted substrate→product links (virtual molecules), and structure lists.




paveWays output (paveWays.py): filtered pathway summaries and visualization outputs derived from Herald predictions (e.g., pathway/structure graphics and accompanying summary tables).




Also includes interactive HTML gene–metabolite network visualizations highlighting mycosinol-associated metabolite features and linked genes (hover tooltips show IDs/annotations and association scores).
DOI: 10.4231/cxva-py97
title: Dataset of Cost and Schedule Overruns in 19 DoD Acquisition Programs (2003-2017)

description: &lt;p&gt;This database includes 4 main folders: (i) cost_vs_time, (ii) maturity_vs_time, (iii) text_analysis, and (iv) GAO_pdfs. &lt;/p&gt;

&lt;p&gt;&lt;br /&gt;
The first folder (cost_vs_time) contains details about the programs&#39; financial characteristics. This include baseline comparison of program cost (R&amp;D cost, procurement cost and total program cost), acquisition cycle time, and total quantity. &lt;/p&gt;

&lt;p&gt;&lt;br /&gt;
The second folder (maturity_vs_time) contains details about the programs&#39; technical characteristics. This include technology maturity and design maturity (as percentages). &lt;/p&gt;

&lt;p&gt;&lt;br /&gt;
The third folder (text_analysis) contains the text analysis codes for the narrative descriptions of major reasons for cost and schedule overruns.&lt;/p&gt;

&lt;p&gt;The fourth folder (GAO_pdfs) contains the original PDFs from which all the data was extracted. &lt;/p&gt;
description: This database is part of the following paper (in review): Hans, A., Chaudhari, A. M., Bilionis, I., Panchal, J. H., (2021) "A Mixed-Method Analysis of Cost and Schedule Growth in Defense Acquisition Programs", ASME DAC, August 17-21st
DOI: 10.4231/3x2d-tj90
title: Reliable Vehicle to Vehicle Communication Networks: Applications in Fuel-Efficient Platooning

description: &lt;p&gt;A dataset consisting of testing and simulation data used to develop our models and understanding. Includes field-testing data for loops performed around a singular obstacle and through an urban canyon at selected transmission powers, taking into account 40 dB of attenuation added. Also include the WinProp database and context files used to perform the simulations.&lt;/p&gt;

&lt;p&gt;This data was acquired from the logs of Cohda Wireless MK5 On-Board Unit (OBU) DSRC radios and Qualcomm Autotalks pre-production CV2X radios. These logs were produced across a series of tests for the two testing scenarios as given above, the singular obstacle blocking LOS in one direction only and the urban canyon blocking LOS on all sides but offering reflection and waveguiding opportunities. In each case, communication was evaluated between radios mounted on two vehicles. A moving vehicle drove in loops around or through the obstacle in question and around a stationary vehicle. Also included are supplementary files which were used with Altair&#39;s &#39;WinProp&#39; Simulation Suite to generate the expected received power from an antenna at the stationary vehicle location to every position in the region of interest.&lt;/p&gt;

&lt;p&gt;The objective behind collecting this data was to analyze the reliability of the two different communication methods, DSRC and CV2X, under difficult conditions where packet failures would be likely. This allows us to develop models for packet error rate vs simulated received power via the results of simulation of the scenarios in question, even for lost packets which obviously do not have a logged received signal strength indicator (RSSI) because they were lost and therefore not logged. We can use these models to make accurate predictions about the efficacy of communication in untested scenarios, as well as comparing the models against each other to get an idea of how CV2X compares to DSRC as a technology.&lt;/p&gt;
description: An investigation into the ability of Cellular Vehicle-to-Everything (CV2X) and Dedicated Short-Range Communication (DSRC) systems to accurately send and receive data between vehicles which have lost their line-of-sight (LOS) due to occluding...
DOI: 10.4231/sjjm-4j31
title: A Guide to Building Data Visualization Capacity

description: &lt;p&gt;This dataset is the result of a self-assessment survey of students&#39; perception of their understanding and capability of implementing the data visualization process in an introductory data visualization course.&lt;/p&gt;
description: Students' self-assessment of the data visualization process.
DOI: 10.4231/trxq-7482
title: Spreadsheet Programs for Design of SC Walls for Impactive Loading

description: &lt;p&gt;This package contains two spreadsheet programs for designing steel-plate composite (SC) walls to impactive loading. The first program is based on equation developed by Bruhl et al. (2015), which are quite conservative. The second program is based on modified equations developed by Kim and Varma (2020), which are still conservative.&lt;/p&gt;

&lt;p&gt;&lt;a name="_Ref503751747"&gt;Bruhl, J., Varma, A.H., and Johnson, W.H. (2014). &ldquo;Design of Composite SC Walls to Prevent Perforation from Missile Impact.&rdquo; International Journal of Impact Engineering, Vol. 75, Jan., pp. 75 &ndash; 87, Elsevier Science, &lt;/a&gt;&lt;a href="http://dx.doi.org/10.1016/j.ijimpeng.2014.07.015"&gt;http://dx.doi.org/10.1016/j.ijimpeng.2014.07.015&lt;/a&gt;  &lt;/p&gt;

&lt;p&gt;Kim, J.M.. and Varma, A.H. (2020). &ldquo;Steel Plate Composite Walls: Behavior, Analysis, and Design for Missile Impact.&rdquo; &lt;em&gt;Final Progress Report&lt;/em&gt;. NRC Grant / Agreement No. NRC-HQ-60-14-G-0001, submitted to &lt;em&gt;US Nuclear Regulatory Commission&lt;/em&gt;&lt;/p&gt;
description: This package contains two spreadsheet programs for designing steel-plate composite (SC) walls to impactive loading. The first program is based on equations developed by Bruhl et al. (2014) and and the second on equations developed by Kim and Varma...
DOI: 10.4231/sn4j-5570
title: Supplemental Table 4.1: The PAH analysis of the high energy water accommodated fraction (HEWAF)

description: &lt;p&gt;Data presented in this table represent the total polycyclic aromatic hydrocarbon (PAH) composition of stock high energy water accommodated fraction (HEWAF) created from Deepwater Horizon surface slick.  Oil from slick (OFS, 1 gram) was blended at high speed with 1 liter 25 ppt salinity saltwater for 30 seconds, transferred to a separatory funnel for 1 hour, and the bottom 800 millilters were drained for use in embryo exposures.  Total PAH (tPAH) composition was analyzed at ALS Environmental (Kelso, WA, USA) using gas chromatography tandem mass spectroscopy (GC-MS-MS).&lt;/p&gt;
description: Supplemental Table 4.1: Measured concentrations (µg/L) of all constituent PAHs present in each of 4 100% HEWAF solutions made with 1 g OFS and 1 L 25 ppt artificial seawater. ND = not detected.
DOI: 10.4231/3rx2-wr09
title: Supplemental Table 5.2: Shear dependent factors statistics

description: &lt;p&gt;Data presented in this table are the p-value results from the statistical analysis of the shear dependent factor metrics (hematocrit, blood viscosity, peak ventricular shear rate, and peak wall shear stress) in developing Japanese medaka (&lt;i&gt;Oryzias&lt;/i&gt; &lt;i&gt;latipes&lt;/i&gt;) hearts.  Metrics were assessed using micro particle image velocimetry (&micro;PIV) of red blood cell patterns within the medaka heart every 24h throughout the course of cardiac development.  Statistical differences were measured using Tukey-Kramer Honest Significant Difference (HSD) tests.  *** denotes p &lt; 0.0001; ** denotes p &lt; 0.001; * denotes p &lt; 0.05.&lt;/p&gt;
description: Elizabeth Allmon dissertation; Supplemental Table 5.2: Shear dependent factor statistics
DOI: 10.4231/ggb2-wg59
title: Supplemental Table 5.1: Cardiac function and geometry statistics

description: &lt;p&gt;Data presented in this table are the p-value results from the statistical analysis of the cardiac function and geometry metrics (heart rate, Reynolds number, Womersley number, ventricular area, ejection fraction, ventricular diastolic time) in developing Japanese medaka (&lt;i&gt;Oryzias&lt;/i&gt; &lt;i&gt;latipes&lt;/i&gt;) hearts.  Metrics were assessed using brightfield microscopy time resolved images of 8-10 heart cycles in the medaka heart every 24h throughout the course of  cardiac development.  Statistical differences were measured using Tukey-Kramer Honest Significant Difference (HSD) tests.  *** denotes p &lt; 0.0001; ** denotes p &lt; 0.001; * denotes p &lt; 0.05.&lt;/p&gt;
description: Elizabeth Allmon dissertation, Supplemental Table 5.1: Cardiac function & Geometry statistics
DOI: 10.4231/addk-qb60
title: Supplemental Table 5.3: Gene expression statistics

description: &lt;p&gt;Data presented in this table are the p-value results from the statistical analysis of the gene expression profiles of 5 genes involved in cardiac development (&lt;i&gt;fgf8, hoxb6b, nkx2.5, bmp4, smyd1&lt;/i&gt;) between 0.5 days post fertilization (dpf) and 12 dpf in Japanese medaka (&lt;i&gt;Oryzias&lt;/i&gt; &lt;i&gt;latipes&lt;/i&gt;) embryos/ larvae.  Gene expression profiles were analyzed using qPCR and standardized against the housekeeping/ control gene &lt;i&gt;18S mRNA&lt;/i&gt;.  Statistical differences between time points were measured using Tukey-Kramer HSD test examined statistical differences with p value &lt;0.05 considered significant. n=8-10 at each dpf. *** denotes p&lt;0.0001. ** denotes p&lt;0.001. * denotes p&lt;0.05.&lt;/p&gt;
description: Elizabeth Allmon dissertation; Supplemental Table 5.3: Gene expression Statistics
DOI: 10.4231/72db-er33
title: Elucidating the history of anuran invasions: life history characteristics associated with range expansion in Florida

description: &lt;p&gt;Invasive species pose serious ecological and economic threats to native biological systems. The temporal dynamics of invasions vary tremendously and are often difficult to characterize but can provide key insights into patterns of establishment and spread of introduced species. Herein, we reconstructed the invasion history of two amphibians that are of ecological concern in Florida, the cane toad (&lt;em&gt;Rhinella marina&lt;/em&gt;) and Cuban treefrog (&lt;em&gt;Osteopilus septentrionalis&lt;/em&gt;). We analyzed publicly available datasets using deterministic spatial interpolation to quantify the range expansion of both species within Florida since their establishment. We found that both species were restricted to small geographic regions of Florida until about 1990, when they increased their rate of spread due at least in part to multiple transplantation events. Since 1990, both species have undergone sharp range increases that may be due to increased recruitment and landscape disturbances caused by Hurricane Andrew in 1992. Presently, the expansion rate of the cane toad shows initial signs of slowing while the Cuban treefrog continues to grow at an exponential rate of increase. Our results highlight the commonalities and differences in range expansion between anuran species with disparate natural history strategies. Short generation time and high fecundity, in combination with disturbances caused by hurricanes, appear to have fueled both species&rsquo; invasions. By comparing invasion histories across species, we can begin to understand the drivers that may influence anuran invasions, including historical events, climate, habitat availability and life history characteristics.&lt;/p&gt;
description: Publicly available data from VertNet and USGS for Rhinella marina and Osteopilus septentrionalis used for spatial analysis to track their invasion in Florida
DOI: 10.4231/6akb-m964
title: Connected and Automated Vehicle Based Intersection Maneuver Assist Systems (CAVIMAS) - Reduced Eye-tracking Data + Survey Data

description: &lt;p&gt;Background:&lt;/p&gt;

&lt;p&gt;Intersection crashes can be potentially mitigated by leveraging deployments of vehicle-to-infrastructure (V2I) and vehicle-to- vehicle (V2V) safety management solutions. However, it is equally critical that these deployments are undertaken in tandem with interventions based on human factors evidence relating to the content and presentation of such solutions. This driving simulator study designed and evaluated a conceptual system - Connected and Automated Vehicle based Intersection Maneuver Assist Systems (CAVIMAS) - aimed at assisting drivers with intersection maneuvers by leveraging connected infrastructure and providing real-time guidance and warnings and active vehicle controls.&lt;/p&gt;

&lt;p&gt;Dataset:&lt;/p&gt;

&lt;p&gt;A flatfile that contains deidentified data from human participants from the driving simulator study.  Data available for each participant and contains variables for system type, workload score, survey items, and eye movement coding of driver visual gaze at intersections. &lt;/p&gt;

&lt;p&gt; &lt;/p&gt;

&lt;p&gt; &lt;/p&gt;
description: Driving simulator data from study designed to evaluate a conceptual Connected and Automated Vehicle based Intersection Maneuver Assist Systems (CAVIMAS) aimed at assisting drivers with intersection maneuvers.