cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20347552
title: Additional file 2 of OsSNDP3 Functions for the Polar Tip Growth in Rice Pollen Together with OsSNDP2, a Paralog of OsSNDP3

description: Additional file 2: Table S1. Gene lists of downregulated in ossndp3. Table S2. Classification of gene ontology terms for biological processes associated with 661 genes downregulated in ossndp3. Table S3. RNA-seq result of three prephenate dehydratases genes that down regulated in ossndp3. Table S4. RNA-seq result of three pollen-preferential ATPases downregulated in ossndp3. Table S5. Primer sequences used in this study.
DOI: 10.6084/m9.figshare.20347552.v1
title: Additional file 2 of OsSNDP3 Functions for the Polar Tip Growth in Rice Pollen Together with OsSNDP2, a Paralog of OsSNDP3

description: Additional file 2: Table S1. Gene lists of downregulated in ossndp3. Table S2. Classification of gene ontology terms for biological processes associated with 661 genes downregulated in ossndp3. Table S3. RNA-seq result of three prephenate dehydratases genes that down regulated in ossndp3. Table S4. RNA-seq result of three pollen-preferential ATPases downregulated in ossndp3. Table S5. Primer sequences used in this study.
DOI: 10.5281/zenodo.6856193
title: A cellular hierarchy in melanoma uncouples growth and metastasis

description: Although melanoma is notorious for its high degree of heterogeneity and plasticity<sup>1,2</sup>, the origin and magnitude of cell state diversity remains poorly understood. Equally, it is not known whether melanoma growth and metastatic dissemination are supported by overlapping or distinct melanoma subpopulations. By combining mouse genetics, unbiased lineage tracing and quantitative modelling, single-cell and spatial transcriptomics, we provide evidence of a hierarchical model of tumour growth that mirrors the cellular and molecular logic underlying embryonic neural crest cell fate specification and differentiation. Our findings indicate that tumorigenic competence is associated with a spatially localized perivascular niche environment, a phenotype acquired through a NOTCH3-dependent intercellular communication pathway established by endothelial cells. Consistent with a model in which only a fraction of melanoma cells is fated to fuel growth, temporal single-cell tracing of a population of melanoma cells harbouring a mesenchymal-like state revealed that these cells do not contribute to primary tumour growth but, instead, constitutes a pool of metastatic-initiating cells that can switch cell identity while disseminating to secondary organs. Our data provide a spatially and temporally resolved map of the diversity and trajectories of cancer cell states within the evolving melanoma ecosystem and suggest that the ability to support growth and metastasis are limited to distinct pools of melanoma cells. The observation that these phenotypic competencies can be dynamically acquired upon exposure to specific niche signals warrant the development of therapeutic strategies that interfere with the cancer cell reprogramming activity of such microenvironmental cues.
DOI: 10.5281/zenodo.6856192
title: A cellular hierarchy in melanoma uncouples growth and metastasis

description: Although melanoma is notorious for its high degree of heterogeneity and plasticity<sup>1,2</sup>, the origin and magnitude of cell state diversity remains poorly understood. Equally, it is not known whether melanoma growth and metastatic dissemination are supported by overlapping or distinct melanoma subpopulations. By combining mouse genetics, unbiased lineage tracing and quantitative modelling, single-cell and spatial transcriptomics, we provide evidence of a hierarchical model of tumour growth that mirrors the cellular and molecular logic underlying embryonic neural crest cell fate specification and differentiation. Our findings indicate that tumorigenic competence is associated with a spatially localized perivascular niche environment, a phenotype acquired through a NOTCH3-dependent intercellular communication pathway established by endothelial cells. Consistent with a model in which only a fraction of melanoma cells is fated to fuel growth, temporal single-cell tracing of a population of melanoma cells harbouring a mesenchymal-like state revealed that these cells do not contribute to primary tumour growth but, instead, constitutes a pool of metastatic-initiating cells that can switch cell identity while disseminating to secondary organs. Our data provide a spatially and temporally resolved map of the diversity and trajectories of cancer cell states within the evolving melanoma ecosystem and suggest that the ability to support growth and metastasis are limited to distinct pools of melanoma cells. The observation that these phenotypic competencies can be dynamically acquired upon exposure to specific niche signals warrant the development of therapeutic strategies that interfere with the cancer cell reprogramming activity of such microenvironmental cues.
DOI: 10.5281/zenodo.6867624
title: Principles of gait encoding in the subthalamic nucleus of people with Parkinson's disease

description: Disruption of subthalamic nucleus dynamics in Parkinson’s disease leads to impairments during walking. Here, we aimed to uncover the principles through which the subthalamic nucleus encodes functional and dysfunctional walking in people with Parkinson’s disease. We conceived a neurorobotic platform embedding an isokinetic dynamometric chair that allowed us to deconstruct key components of walking under well-controlled conditions. We exploited this platform in 18 patients with Parkinson’s disease to demonstrate that the subthalamic nucleus encodes the initiation, termination, and amplitude of leg muscle activation. We found that the same fundamental principles determine the encoding of leg muscle synergies during standing and walking. We translated this understanding into a machine learning framework that decoded muscle activation, walking states, locomotor vigor, and freezing of gait. These results expose key principles through which subthalamic nucleus dynamics encode walking, opening the possibility to operate neuroprosthetic systems with these signals to improve walking in people with Parkinson’s disease.
DOI: 10.5281/zenodo.6867623
title: Principles of gait encoding in the subthalamic nucleus of people with Parkinson's disease

description: Disruption of subthalamic nucleus dynamics in Parkinson’s disease leads to impairments during walking. Here, we aimed to uncover the principles through which the subthalamic nucleus encodes functional and dysfunctional walking in people with Parkinson’s disease. We conceived a neurorobotic platform embedding an isokinetic dynamometric chair that allowed us to deconstruct key components of walking under well-controlled conditions. We exploited this platform in 18 patients with Parkinson’s disease to demonstrate that the subthalamic nucleus encodes the initiation, termination, and amplitude of leg muscle activation. We found that the same fundamental principles determine the encoding of leg muscle synergies during standing and walking. We translated this understanding into a machine learning framework that decoded muscle activation, walking states, locomotor vigor, and freezing of gait. These results expose key principles through which subthalamic nucleus dynamics encode walking, opening the possibility to operate neuroprosthetic systems with these signals to improve walking in people with Parkinson’s disease.
DOI: 10.4121/16634908
title: Data underlying the paper: Upscaling scenarios for ocean thermal energy conversion with technological learning in Indonesia and their global relevance

description: This Excel file summarises the results of the scenarios that use an OTEC growth rate rOTEC of 28% and 40% per year, respectively.<br>
DOI: 10.4121/16634908.v2
title: Data underlying the paper: Upscaling scenarios for ocean thermal energy conversion with technological learning in Indonesia and their global relevance

description: This Excel file summarises the results of the scenarios that use an OTEC growth rate rOTEC of 28% and 40% per year, respectively.<br>
DOI: 10.4121/16634908.v1
title: Data underlying the paper: Upscaling scenarios for ocean thermal energy conversion with technological learning in Indonesia and their global relevance

description: This Excel file summarises the results of the scenarios that use an OTEC growth rate rOTEC of 28% and 40% per year, respectively.<br>
DOI: 10.6084/m9.figshare.19802617
title: Pone-D-21-38566.xlsx

description: <strong>Construction of the experimental rat model of gestational diabetes (Dataset)</strong>
DOI: 10.6084/m9.figshare.19802617.v2
title: Pone-D-21-38566.xlsx

description: <strong>Construction of the experimental rat model of gestational diabetes (Dataset)</strong>
DOI: 10.6084/m9.figshare.19802617.v1
title: Pone-D-21-38566.xlsx

description: <strong>Construction of the experimental rat model of gestational diabetes (Dataset)</strong>
DOI: 10.21227/8t78-jc03
title: Supporting Document

description: This supporting document presents additional information related to the journal article entitled "Screen-Printed Microcantilevers Coated with Functionalized Mesocellular Foam Silica for Detection of Solvent Vapors". It contains explanations and pictures of the set-up experiments for studying the microcantilever behaviors under different temperatures and solvent vapors.
DOI: 10.6084/m9.figshare.20347767
title: Supplementary Material for: OPRM1-ROS1 Fusion Detected by Next-Generation Sequencing with Circulating DNA in a Patient with EGFR Mutated Advanced NSCLC: A Case Report

description: ROS1 comprises a small molecular subset of NSCLC, and several fusion partners have been discovered. Concomitant mutations of EGFR and ROS1 in NSCLC have been occasionally reported, while no clear standard of treatment has been revealed. Here we report a case with metastatic lung adenocarcinoma detected to have EGFR 21 exon L858R mutation at diagnosis, who responded to first-line gefitinib and second-line osimertinib treatment. Next-generation sequencing during the treatment course revealed multiple alterations, including an OPRM1-ROS1 Ointergenic: R36 fusion. We reviewed the related literatures but found no report of this fusion type previously. The application of ctDNA detection results in the finding of new alterations, which need further confirmation.
DOI: 10.6084/m9.figshare.20347716
title: Preprocedural muscle strength and physical performance and the association with functional decline or mortality in frail older patients after Transcatheter Aortic Valve Implementation: a systematic review and meta-analysis

description: Data used for a systematic review on preprocedural muscle strength and physical performance and the association with functional decline or mortality in frail older patients after Transcatheter Aortic Valve Implementation. <br> This project has the following items 1. Original search data 2. Included papers and quality assessment 3. Data extraction form 4. Syntax used for analysis <br> The data will be shared on request. For more information contact: Dennis van Erck, <sub>d.vanerck@amsterdamumc.nl</sub>
DOI: 10.6084/m9.figshare.20347716.v1
title: Preprocedural muscle strength and physical performance and the association with functional decline or mortality in frail older patients after Transcatheter Aortic Valve Implementation: a systematic review and meta-analysis

description: Data used for a systematic review on preprocedural muscle strength and physical performance and the association with functional decline or mortality in frail older patients after Transcatheter Aortic Valve Implementation. <br> This project has the following items 1. Original search data 2. Included papers and quality assessment 3. Data extraction form 4. Syntax used for analysis <br> The data will be shared on request. For more information contact: Dennis van Erck, <sub>d.vanerck@amsterdamumc.nl</sub>
DOI: 10.6084/m9.figshare.20347422
title: 3_species_climate_data.csv

description: Contains species’ climate data for all locations where a given species can be found. These data were used to generate data from the following file.
DOI: 10.6084/m9.figshare.20347422.v1
title: 3_species_climate_data.csv

description: Contains species’ climate data for all locations where a given species can be found. These data were used to generate data from the following file.
DOI: 10.6084/m9.figshare.20347425
title: 2_cities_climate_exposure.csv

description: Contains current (cur) and future (fut) climate data (two time periods [2050 and 2070] and two RCP [4.5 and 6.0]) from CHELSA Version 1.2 climatologies at high resolution for the earth’s land surface areas 3, at a spatial resolution of 30 arc-seconds (∼1 km at the equator), for five climate variables for 164 cities.
DOI: 10.6084/m9.figshare.20347425.v1
title: 2_cities_climate_exposure.csv

description: Contains current (cur) and future (fut) climate data (two time periods [2050 and 2070] and two RCP [4.5 and 6.0]) from CHELSA Version 1.2 climatologies at high resolution for the earth’s land surface areas 3, at a spatial resolution of 30 arc-seconds (∼1 km at the equator), for five climate variables for 164 cities.
DOI: 10.4119/unibi/2964566
title: Dataset for ''Towards the chiral phase transition in the Roberge-Weiss plane''

description: Data publication with data to reproduce all figures in ''Towards the chiral phase transition in the Roberge-Weiss plane'', arXiv:2205.12707.
DOI: 10.6084/m9.figshare.20347437
title: 6_cities_safety_margin_risk_proportions.csv

description: Contains the total number of species in each city, the number and proportions of species predicted to exceed their safety margins (no_safe) and at high risk of climate change, and the number of species currently experiencing safe climate conditions and predicted to have low risk of future climate change for all climate variables, time periods (2050 and 2070) and RCP (4.5 and 6.0).
DOI: 10.6084/m9.figshare.20347419
title: 1_cities_summary.csv

description: Contains information for 164 cities, including city’s name, country, the Notre Dame Global Adaptation Initiative County score for each country 2 (ND_gain), longitude, latitude, population density, climate Köppen classification and the global eco-floristic zone.
DOI: 10.6084/m9.figshare.20347299
title: Appendix A

description: Figures and tables in 'Effectiveness of Chinese herbal medicine Zhi Shi Xiao Pi Wan on adult diabetic gastroparesis: a systematic review and meta-analysis'
DOI: 10.6084/m9.figshare.20347269.v1
title: PRISMA_2020_checklist

description: PRISMA checklist for 'Effectiveness of Chinese herbal medicine Zhi Shi Xiao Pi Wan on adult diabetic gastroparesis: a systematic review and meta-analysis'
DOI: 10.6084/m9.figshare.20347269
title: PRISMA_2020_checklist

description: PRISMA checklist for 'Effectiveness of Chinese herbal medicine Zhi Shi Xiao Pi Wan on adult diabetic gastroparesis: a systematic review and meta-analysis'
DOI: 10.6084/m9.figshare.20347833
title: Supplementary Material for: Effect of Traditional Chinese Medicine on Psoriasis Vulgaris: A Meta Analysis and Systematic Review

description: Background: Psoriasis is a chronic, inflammatory autoimmune skin disease that affects 2%–3% of the world’s population. Lesions are mainly found on the limbs, trunk, and scalp, but may also affect other parts of the body, and the cause is not yet known. The chronic and relapsing nature of psoriasis makes it one of the most complex and important diseases in current dermatology research. Methods: The search was conducted using PubMed, Embase, Cochrane Library, Web of Science, China National Knowledge Internet, Wanfang Data, VIP journals database, and Chinese biomedical literature database (CBM). The retrieval time limit was from the establishment of the database to January 2021. The quality of the selected literature were evaluated, and ReView Manager 5.3 was used for Meta-analysis after randomized controlled trials were filtered. Results: Finally, 16 randomized controlled trials involving 1967 patients were included. The total effective rate (OR =3.68,95% CI[2.73,4.95], P&lt;0.00001), cure rate (OR =2.01, 95% CI[1.62,2.49]c, P &lt;0.00001), and PASI score (OR =-1.83, 95% CI[-2.39, -1.26], P &lt;0.00001) of the traditional Chinese medicine (TCM) were superior than the Diyin tablet.. Conclusion: In the treatment of psoriasis, traditional Chinese medicine (TCM) shows higher efficacy than the Diyin tablet. However, due to the limitations of the included literature, we still need more double-blind, placebo-controlled trials with large samples and multiple centers to provide high-quality clinical evidence.
DOI: 10.6084/m9.figshare.20347833.v1
title: Supplementary Material for: Effect of Traditional Chinese Medicine on Psoriasis Vulgaris: A Meta Analysis and Systematic Review

description: Background: Psoriasis is a chronic, inflammatory autoimmune skin disease that affects 2%–3% of the world’s population. Lesions are mainly found on the limbs, trunk, and scalp, but may also affect other parts of the body, and the cause is not yet known. The chronic and relapsing nature of psoriasis makes it one of the most complex and important diseases in current dermatology research. Methods: The search was conducted using PubMed, Embase, Cochrane Library, Web of Science, China National Knowledge Internet, Wanfang Data, VIP journals database, and Chinese biomedical literature database (CBM). The retrieval time limit was from the establishment of the database to January 2021. The quality of the selected literature were evaluated, and ReView Manager 5.3 was used for Meta-analysis after randomized controlled trials were filtered. Results: Finally, 16 randomized controlled trials involving 1967 patients were included. The total effective rate (OR =3.68,95% CI[2.73,4.95], P&lt;0.00001), cure rate (OR =2.01, 95% CI[1.62,2.49]c, P &lt;0.00001), and PASI score (OR =-1.83, 95% CI[-2.39, -1.26], P &lt;0.00001) of the traditional Chinese medicine (TCM) were superior than the Diyin tablet.. Conclusion: In the treatment of psoriasis, traditional Chinese medicine (TCM) shows higher efficacy than the Diyin tablet. However, due to the limitations of the included literature, we still need more double-blind, placebo-controlled trials with large samples and multiple centers to provide high-quality clinical evidence.
DOI: 10.5519/qd.rqd91gy6
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.34740/kaggle/dsv/3967984
title: AQI - Air Quality Index
DOI: 10.34740/kaggle/dsv/3968359
title: AutoXGB
DOI: 10.34740/kaggle/dsv/3968362
title: AQI - Air Quality Index
DOI: 10.4119/unibi/2961538
title: Supplementary material for "AMMSA-21: a revised version of the Acceptance of Modern Myths about Sexual Aggression Scale in English, German, Polish, and Spanish"
DOI: 10.25646/9796
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.6084/m9.figshare.20167700
title: Integrated Database for Economic Complexity

description: The database collect and aggregate the database of Goods and Services at 2 digits. While the data of Goods is already reconciled and regularized, the data of Service has been reconstructed in the present data.
DOI: 10.25646/9779
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.25646/9996
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.25646/9985
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.5281/zenodo.6817380
title: Hindustani Music Alankar Dataset

description: This dataset is a collection of CSV files that include the time interval annotations of Alankars (ornamentations) present in the compositions of Hindustani classical music. The selected music files comprise the files from the Dunya Corpus [1]. The annotations are for the Alankar segments in the truncated music files (MBID included). In total, there are 361 Alankar segments. There are 17 recordings in the dataset, with a total duration of approximately 25 minutes. Annotations for the Alankar segments include middle and end sections. References:<br> [1]. Gulati, S., Serrà, J., Ganguli, K. K., & Serra, X. (2014). Landmark detection in Hindustani music melodies. In Proceedings of the International Computer Music Conference / Sound and Music Computing Conference (ICMC-SMC), pp. 1062- 1068. Athens, Greece.<br> _________________________________________________________________________________________________________<br> This project was funded under the grant number: ECR/2018/000204 by the Science & Engineering Research Board (SERB).