cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5683/sp2/rzxezz
title: Figure 5

description: BMK-DKO cells expressing CBcl-W, transfected with VBH3 proteins treated with BH3 mimetics. Data displayed in Figure 5a-d was generated from combining results of 4 screens: 1) mim1_BclW_screen {Rep1_20190212, Rep2_20190213, Rep3_20190214, Rep4_20190215} 2) mim2_BclW_screen {Rep1_20190403, Rep2_20190404, Rep3_20190405, Rep4_20190406} 3) XL2W_screen {Rep1_20191108, Rep2_20191109, Rep3_20191110, Rep4_20191111} Figure 5f-g was generated from BH3 swap screen {Rep1_20200821, Rep2_20200827, Rep3_20200902, Rep4_20200904} -For each screen, see "Master Platemap" for screen design as well as data generated in qF3 analysis step 8_CombineBinnedReps: Here are, "combined_WellID_binnedReps_.csv" data files, that were fit to determine live cell Kds. Exported result from fitting these data is also included in, "CombinedBinnedReps_Results.xlsx". -Figure 5a-c shows the average of controls (VBH3 proteins and corresponding collisional control: VBH3-4E) included in each of these screens. (See "Summarized_CBclW_ Results.xlsx").
DOI: 10.5683/sp2/ylhf73
title: Figure 5_plot binding curves

description: BMK-DKO cells expressing CBcl-W, transfected with VBH3 proteins treated with BH3 mimetics. This folder contains each binding curve plotted in STEP 10 of qF3 analysis. Filename includes information: "Well ID_Donor Fusion Protein_Transfectant_Treatment_Treatment concentration". Where a decimal in concentration is replaced with a dash in the filename. ie. 1.25uM is 1-25uM. The Filename of the file corresponds to the data plotted in Red. Positive and Negative controls (VBH3 and VBH3-4E) are plotted on each graph for comparison in Blue and Grey, respectively. If the data could be fit, then fit is displayed on the graph. Data displayed in Figure 5a-d was generated from combining results of 3 screens: 1) mim1_BclW_screen {Rep1_20190212, Rep2_20190213, Rep3_20190214, Rep4_20190215} 2) mim2_BclW_screen {Rep1_20190403, Rep2_20190404, Rep3_20190405, Rep4_20190406} 3) XL2W_screen {Rep1_20191108, Rep2_20191109, Rep3_20191110, Rep4_20191111} Figure 5f-g was generated from BH3 swap screen {Rep1_20200821, Rep2_20200827, Rep3_20200902, Rep4_20200904} - see, "Figure 5" Dataset in dataverse for associated .CSV files for each binding curve.
DOI: 10.5683/sp2/f3kqcv
title: Figure 7

description: BMK-DKO cells expressing CMcl-1, transfected with VBH3 proteins treated with BH3 mimetics. Data displayed in Figure 7a-d was generated from combining results of 3 screens: 1) mim1_Mcl1_screen {Rep1_20180906, Rep2_20180907, Rep3_20180908, Rep4_20180909} 2) mim2_Mcl1_screen {Rep1_20190408, Rep2_20190410, Rep3_20190411, Rep4_20190412} 3) Mcl1_ABT199_screen {Rep1_20191024, Rep2_20191025, Rep3_20191026, Rep4_20191027} Figure 7e-f was generated from BH3 swap screen {Rep1_20200821, Rep2_20200827, Rep3_20200902, Rep4_20200904} -For each screen, see "Master Platemap" for screen design as well as data generated in qF3 analysis step 8_CombineBinnedReps: Here are, "combined_WellID_binnedReps_.csv" data files, that were fit to determine live cell Kds. Exported result from fitting these data is also included in, "CombinedBinnedReps_Results.xlsx". -Figure 7a-c shows the average of controls (VBH3 proteins and corresponding collisional control: VBH3-4E) included in each of these screens. (See "Summarized_CMcl1_ Results.xlsx").
DOI: 10.5683/sp2/2vmffl
title: Figure 7_plot binding curves

description: BMK-DKO cells expressing CMcl-1, transfected with VBH3 proteins treated with BH3 mimetics. This folder contains each binding curve plotted in STEP 10 of qF3 analysis. Filename includes information: "Well ID_Donor Fusion Protein_Transfectant_Treatment_Treatment concentration". Where a decimal in concentration is replaced with a dash in the filename. ie. 1.25uM is 1-25uM. The Filename of the file corresponds to the data plotted in Red. Positive and Negative controls (VBH3 and VBH3-4E) are plotted on each graph for comparison in Blue and Grey, respectively. If the data could be fit, then fit is displayed on the graph. Data displayed in Figure 7a-d was generated from combining results of 3 screens: 1) mim1_Mcl1_screen {Rep1_20180906, Rep2_20180907, Rep3_20180908, Rep4_20180909} 2) mim2_Mcl1_screen {Rep1_20190408, Rep2_20190410, Rep3_20190411, Rep4_20190412} 3) Mcl1_ABT199_screen {Rep1_20191024, Rep2_20191025, Rep3_20191026, Rep4_20191027} Figure 7e-f was generated from BH3 swap screen {Rep1_20200821, Rep2_20200827, Rep3_20200902, Rep4_20200904} - see, "Figure 7" Dataset in dataverse for associated .CSV files for each binding curve.
DOI: 10.5683/sp2/fqp6vy
title: Figure S1

description: Raw images used to generate Figure S1B, S1C, S1D are currently being uploaded to Image Data Resource. The link to this image resource will be provided here by April 2022, at the latest. Here we provide the source data used to generate plots in Figure S1 and original Western Blots that were cropped and displayed in the paper. Figure S1A Original Western Blots, and replicates. Figure S1B: measured cell death from 3 replicates Figure S1C: measured cell death from 3 replicates Figure S1D: measured cell death from 3 replicates Also included dose-response curves for data displayed in the heatmap: "Plot Cell death_BMKs measure BaxBak dependency1.pdf ... and 2
DOI: 10.5683/sp2/iez8ti
title: Figure S3

description: *Note* data organized into .Zip folders we suggest to maintain format when downloading. Figure S3a -Coommassie stained SDS-PAGE gels of purified Bcl-XL, mCerulean3 and Venus proteins Figure S3b -Lifetime data acquired for purified mCerulean3 and Venus on ISS-Alba. Original VistaVision files included as well as exported lifetime histogram. Figure S3c "Figure S3c Tecan data.xlsx"= Original Excitation/Emission scan on Tecan Fluorimeter. Figure S3d Example exported results from qF3 Replicate Analysis step 2. Date acquired= 20190408. Figure S3e Check TCSPC counts by exciting each fluorophore independently. Figure S3f mc3_bleedthrough_into_spectal_channel Figure S3g -FRET histogram data for each construct -Phasor plot data for each construct -MATLAB Figure, Top & Side views of 3D dataset used to determine G factor (image data available upon request) Figure S3h Source data for 3 replicates &gt; combined to generate histograms for mCerulean3-fusion protein expression distribution in BMK-DKO. Figure S3i Binned binding curve data, filtered by mCerulean3 level. Several ranges sampled.
DOI: 10.5683/sp2/sphv6g
title: Figure S5

description: *Note* data organized into .Zip folders we suggest to maintain format when downloading. Figure S5A -Binned binding qF3 curve data for VBH3 proteins that failed to bind sufficiently to CMcl-1. Figure S5B Simulated Shape Ratio data and MATLAB code Figure S5C Shape Ratios of known binding partners of VBH3 proteins with CBclXL or CBcl2 and for VBH3. These values correspond to exported sRatios for control wells included in the source data for Figures 3,4,5,7. Figure S5D Not shown here * Fig S5D is a copy of data in Figures 3,4,5,7 summarized results. Figure S5E Binding curve data, combined from 4 biological replicates of "mim2_BclW screen" or "mim2_Bcl2_screen". The mCerulean3-fused anti-apoptotic protein and transfected Venus-fused BH3 are given in the filename. Displayed graphs can be generated by plotting the first 2 columns as a scatter plot. Figure S5F Binding curve data, combined from 3 biological replicates of "BH3-swap screen". The mCerulean3-fused anti-apoptotic protein and transfected Venus-fused BH3 are given in the filename. Displayed graphs can be generated by plotting the first 2 columns as a scatter plot.
DOI: 10.5683/sp2/bkrc8r
title: Figure S6

description: Figure S6a-b -Lifetime measurements with each treatment Figure S6c -Spectra of ABT199 measured on Tecan Fluorimeter
DOI: 10.5683/sp2/0shjnt
title: Figure 6

description: Raw images are currently being uploaded to Image Data Resource. The link to this image resource will be provided here by April 2022, at the latest. Here we provide the exported colocalization data used to generate plots in Figure 6, and the original images that were cropped for display in the paper. Figure 6a -Example cropped images for each cell line treated with each BH3 mimetic. Data is organized into folders according to date acquired. Original image and corresponding image with adjusted intensity/contrast (displayed in this paper) are included. -See powerpoint for an additional observation: AT-101 causes CBclW to form small circles in the cell. Unknown mechanism or role in apoptosis. Figure 6b -Colocalization analysis results from BMK-DKO cells expressing CBcl-XL, CBcl-2, CMcl-1, or CBclW and treated with BH3 mimetics. Original image data available upon request.
DOI: 10.5683/sp2/tipugz
title: Figure S3_G Factor ROI data

description: 2 Biological Replicates. See Methods_S1 from our manuscript for details on sample preparation. Refer to Platemap for Well ID. Intensity data acquired with 3 different configuration on the INO -FHS. ROIs were selected and applied uniformly to images acquired with each configuration. "Well ID given at the beginning of Filename. ie. C2 is in row C column 2. "FOV" indicates the field of view. "CFP" indicates only donor (mCerulean3) excitation, "YFP" indicates only acceptor (Venus) excitation and "FRET" indicates both channels excited simultaneously. "segmentmap" is a copy of the ROIs selected and saved. Use as example to run our G-factor code on Github. Final analyzed data is displayed in Figure S3.
DOI: 10.5683/sp2/0zzj0w
title: Focused Penetrative Plumes: A Possible Consequence of Dissociation Transition of Post-Perovskite at ~0.9 TPa in Massive Rocky Super-Earths

description: Data used in the following paper: Focused Penetrative Plumes: A Possible Consequence of Dissociation Transition of Post-Perovskite at ~0.9 TPa in Massive Rocky Super-Earths
DOI: 10.5683/sp2/pavuag
title: Data for Toluene NAPL Oxidation by Ferrous Activated Persulfate in a Fractured Rock Glass Replica

description: Dataset from Fracture Experiments
DOI: 10.5683/sp2/iancya
title: Replication Data for: Figures 3A, 4A,B,C: Thyroid Carcinoma Gene Expression

description: 3A. log cpm data for 3 clusters derived from the top 1000 most variable genes in pediatric thyroid carcinoma 4A. log cpm data for pediatric and adult (TCGA) 500 most variable genes 4B. log cpm data for supervised clustering analysis of 1000 most differentially-expressed genes in CCDC6-RET driven Pediatric vs. Adult papillary thyroid carcinomas 4C. log cpm data for supervised clustering analysis of 1000 most differentially-expressed genes in BRAF-V600E driven Pediatric vs. Adult papillary thyroid carcinomas
DOI: 10.5683/sp2/kcjlku
title: Multi-Element Hybrid Simulation Test Results on a 5-story BRBF

description: Benchmark experimental results from multi-element pseudo-dynamic hybrid simulations on a 5-story BRBF
DOI: 10.5683/sp2/gebmnx
title: Multi-Element Hybrid Simulation Test Results on a 4-story YBS

description: Benchmark experimental results from multi-element pseudo-dynamic hybrid simulations on a 4-story YBS
DOI: 10.5683/sp2/dxe71p
title: Multi-Element Hybrid Simulation Test Results on a 5-story SCBF

description: Benchmark experimental results from multi-element pseudo-dynamic hybrid simulations on a 5-story SCBF
DOI: 10.5683/sp/3hjkj7
title: Pierson v. Post Judgment Roll

description: Pierson v. Post has been made famous by its use in American property law classrooms since the 1950s. It is often the first case law students study in property as it provides an introduction to the concept of first possession and how one acquires possession in a wild animal, the fox, owned by no one. The case report reproduced in law school casebooks was created by New York’s first official law reporter George Caines after the case was argued by eminent counsel and reversed in Pierson’s favor at the New York Supreme Court. What law students generally read is a brief statement of the facts, followed the majority decision by Justice Daniel Tompkins and a dissent by Justice Brockholst Livingston. The Judgment Roll is a copy — probably made by the clerk of Pierson’s lawyer Nathan Sanford — of the documents Sanford filed in his writ of certiorari to the New York Supreme Court. This was a process in which the loser before a Justice of the Peace could appeal the decision by asking for the New York Supreme Court to command that the Justice of the Peace explain what had been done before him in the magistrate’s court, in this case a jury trial held at Post’s request on December 30, 1802, for their review. It was the job of the New York Supreme Court to check, yes, all the ‘i’s were dotted and ‘t’s were crossed in the magistrate’s proceedings and if they were not, Pierson (the “now plaintiff” before the New York Supreme Court) was justified in winning a reversal of the jury’s 75¢ award for Post and his $5 in costs. The Judgment Roll also includes the command to Justice of the Peace John N. Fordham to return the documentation, Sanford’s six specific grounds of appeal, as well as the words the New York Supreme Court used in order to hold the case over from year to year until it was ultimately decided in Pierson’s favor on September 10, 1805. Sanford then filed this copy of all of the documents (those provided by Fordham, his own, and the New York Supreme Court) as the “Record” in the case on the same day. This judgment roll was found by University of Toronto law professor and legal historian Angela Fernandez at the Division of Old Records, New York County Clerk’s Office in New York City in May 2007. It has subsequently disappeared. This dataset was created in order to preserve the images and make them publicly available. A transcript of the Judgment Roll is available as an appendix in Angela Fernandez, Pierson v. Post, the Hunt for the Fox: Law and Professionalization in American Legal Culture (New York: Cambridge University Press, 2017). An online exhibit of the judgment roll was also created here.
DOI: 10.5683/sp/byrqqs
title: Russian Electoral Interventions, 1991-2017

description: This dataset contains information on all Russian interventions in foreign elections from 1991-2017.
DOI: 10.5683/sp/wno9tx
title: Replication data for Hay et al. 2018

description: Climatological mean model output as described in the paper “On the relative robustness of the atmospheric circulation response to high-latitude and low-latitude warming”, by Stephanie Hay, Paul J. Kushner, Russell Blackport, and Kelly McCusker, submitted to Geophysical Research Letters.
DOI: 10.5683/sp2/ponap6
title: Don Valley Historical Mapping Project

description: Toronto’s Don River Valley is arguably the city’s most distinctive physical feature. As a provider of water, power, sustenance, building materials, and transportation, it has played an important role in the city’s settlement and development. The river valley has changed dramatically in the years since European settlement, particularly during the late nineteenth and early twentieth century, when the Lower Don River was straightened and channelized and the huge marsh at its mouth drained and filled. Today, the Lower Valley forms the foundation for one of the most densely populated areas in Canada, outlining as it does the eastern portion of Toronto’s downtown core and radiating residential areas. This project documents historical changes in the landscape of the Don River Valley. Drawing from the wide range of geographical information available for the Don River watershed (and the Lower Don in particular), including historical maps, geological maps, fire insurance plans, planning documents, and city directories, the project uses Geographic Information Systems software to place, compile, synthesize and interpret this information and make it more accessible as geospatial data and maps. The project is a work in progress. To date, we have scanned several dozen historical maps of Toronto and the Don River watershed, and compiled the following geospatial datasets: 1) changes to the river channel and shoreline of Toronto harbour, 1858-1918; 2) industrial development in the Lower Don River Watershed, 1857-1951 (as points, and in some cases polygons); 3) historical mill sites in the Don River Watershed, 1825; 18524) land ownership in the watershed, 1860 and 1878; and 4) points of interest in the watershed. In the future, we hope to expand the project to include data from other Toronto area watersheds and other parts of the city. The project was conducted through a collaboration between Jennifer Bonnell, a doctoral student in the History of Education program at the University of Toronto's Ontario Institute for Studies in Education (OISE/UT) - now at York University in the History Department and Marcel Fortin, the Geographic Information Systems (GIS) and Map Librarian at the University of Toronto's Map and Data Library. Financial and in-kind support was provided by the Network in Canadian History and Environment (NiCHE) and the University of Toronto Libraries. Valuable research support for the Points of Interest pages came from Lost Rivers, a community-based urban ecology organization focused on building public awareness of the City's river systems. Jordan Hale, a University of Toronto Geography student conducted much of the digitization and database work.This project could not have been completed without their skilled assistance and dedication.
DOI: 10.5683/sp2/0dzpen
title: my_test

description: test
DOI: 10.5683/sp2/cjs7qa
title: Vaska's space

description: This repository contains a list of 1947 Iridium complexes, including their geometry (xyz files) and energy barriers for the hydrogen splitting reaction. Data Coordinates in .xyz format - data/coordinates_complex: coordinates of all complexes without additional hydrogen - data/coordinates_TS: coordinates of all complexes with an additional hydrogen molecule in transition state - data/coordinates_molSimplify: coordinates of all complexes generated with molSimplify developed by the Kulik group Properties in .csv format (data/vaskas_features_properties_smiles_filenames.csv) - "smiles": SMILES strings of all molecules - "filename": corresponding xyz filename - "barrier": DFT computed energy barrier [kcal/mol] for the transition state of the hydrogen splitting reaction - "distance": DFT computed H-H distance in the transition state geometry - "chi-X", "Z-X", "T-X", "I-X" and "S-X": (auto)correlation features described in our paper
DOI: 10.5683/sp2/thvvs0
title: #TakeBackTPL tweets

description: Tweet ids for #TakeBackTPL tweets. Tweets have been collected with Documenting the Now's twarc, an open-source command-line tool. Tweets can be recreated or "hydrated" in JSON format with twarc by running: twarc hydrate takebacktpl-ids.txt &gt; takebacktpl-tweets.jsonl Tweets have been collected for the time period from 2019-10-24 to 2019-11-03.
DOI: 10.5683/sp2/rzs1fl
title: Replication code and data for "Can Tolling Help Everyone? Estimating the Aggregate and Distribution Consequences of Congestion Pricing"

description: This repository contains the online appendix and replication code and data for "Can Tolling Help Everyone? Estimating the Aggregate and Distribution Consequences of Congestion Pricing". Please see readme.pdf for more details. Also note that "tree view" is much more user friendly then the default "list view".
DOI: 10.5683/sp2/azfvk2
title: Canada Declassified

description: Test
DOI: 10.5683/sp2/4go2mc
title: Publications of Syed Ishtiaque Ahmed

description: Publications of Syed Ishtiaque Ahmed
DOI: 10.5683/sp2/1jxq2c
title: Parental Vaccine Hesitancy Data

description: This dataset includes data on demographic and attitudinal predictors of parental vaccine hesitancy.
DOI: 10.5683/sp2/i0hnu6
title: Ontario Active and Inactive Waste Disposal Sites

description: Waste disposal sites in Ontario both inactive and active up to 1991. Based on an Ontario Government publication Ontario Ministry of the Environment. "Waste Disposal Site Inventory", June 1991 G 3501 N46 900 - 1600 1990 TEXT
DOI: 10.5683/sp2/y7t3ww
title: Optical Microscope video recordings of Isopropanol Wetting and Evaporation of the Nano-hole array grating in Optical Fibre

description: Optical microscope video recordings (400× magnification) of the optical fibre cross-section (125 µm diameter) have resolved the nano-hole array formed with 200 nm diameter and 1072 nm period in standard optical communication fibre (Corning, SMF-28). The recordings capture the filling and evaporation of isopropanol into and from the nano-hole array, with the meniscus confirming that the nano-holes are fully open from cladding-to-cladding without showing hole-to-hole break-through.
DOI: 10.5683/sp2/aa2z2m
title: widget test

description: test for dataverse widgets
DOI: 10.5683/sp2/lkruvh
title: Markov Model of Urban Evolution Data

description: This file contains census data for the City of Toronto for a number of socioeconomic, demographic, and housing variables from 1996-2016.
DOI: 10.5683/sp2/bc9u5f
title: The role of fluid pressure-induced aseismic slip in earthquake cycle modulation

description: Earthquake cycle simulation data pertaining to the related publication.
DOI: 10.5683/sp2/cm9qy1
title: Penn Treebank Resources

description: This is a collection of resources for parsing with the Penn Treebank (PTB) from the University of Pennsylvania. The authors of this dataset did not create the PTB, and the PTB is not a part of this dataset. The PTB is only available on license from the Linguistic Data Consortium.
DOI: 10.5683/sp2/cjdvlm
title: Automated Minimum Foot Clearance Measurement System

description: Pictures taken from sidewalks of Toronto, pedestrians are recorded from the knee down; Data is used to assess foot clearance
DOI: 10.5683/sp2/9rdqyb
title: The dataset for "Pre-collisional extension of microcontinental terranes by a subduction pulley"

description: This dataset includes the numerical experiment outputs of the article entitled "Pre-collisional extension of microcontinental terranes by a subduction pulley"
DOI: 10.5683/sp2/u4lvz3
title: Replication Data for: Magnitude-frequency distributions and slip-history predictions for earthquakes using cellular automata and absorbing Markov chains

description: Replication Data for: " Magnitude-frequency distributions and slip-history predictions for earthquakes using cellular automata and absorbing Markov chains" by Edouard Kravchinsky and Mirko van der Baan, submitted to Journal of Geophysical Research: Solid Earth. Data include: Cellular automata (CA) models timeseries and slip history, Markov-chain Monte Carlo (MCMC) models timeseries and slip history, Markov-chain (MC) models transition matrix and Markov-chain (MC) models exhaustive search.
DOI: 10.5683/sp2/dqydqw
title: TEX101_Sinai_Cornell

description: TEX101 protein concentration is semen and other relevant clinical data
DOI: 10.5683/sp2/uqvxcw
title: Objective and Subjective Hearing Difficulties Are Associated With Lower Inhibitory Control

description: This dataverse contains the stimuli and experimental Inquisit files for an online study examining the relationship between visual and auditory cognitive interference and speech perception in noise and self-reported hearing measures. The files include a demographic questionnaire and online versions of the Geriatric Depression Scale (GDS), the Geriatric Anxiety Inventory (GAI), and the Speech, Spatial and Qualities of Hearing Scale (SSQ). The files also include a visual and auditory Stroop task and the stimuli used. The Stroop tasks were implemented by Millisecond Software (2020) and then modified by our team.
DOI: 10.5683/sp2/f8sjbv
title: Data from the cluster-randomized controlled trial of the Kusamala Program

description: Cluster-randomized controlled trial of the Kusamala Program for caregivers and children with severe acute malnutrition in Blantyre, Malawi
DOI: 10.5683/sp2/pmza4h
title: Clomid Study

description: Study patients' pre-clomiphene citrate sperm concentration, hormone values and age; and post-treatment 3 months sperm concentration and hormone values.