cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2hy3gj
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Fossil",
 "TaxonKey is Eperua Aubl."
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0187714-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xhbpop
title: Occurrence Download

description: A dataset containing 156143 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Observation",
 "Country is Chinese Taipei"
 ]
}

 The dataset includes 156143 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029483-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m28q8q
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Globba salarkhanii (M.A.Rahman & Yusuf) Govaerts"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013508-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r6dvvq
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Human Observation)",
 "CoordinateUncertaintyInMeters 0.0-5000.0",
 "Country is one of (Hong Kong, Chinese Taipei, China, Macao)",
 "TaxonKey is Ciconia boyciana Swinhoe, 1873",
 "Year 2014-2023"
 ]
}

 The dataset includes 55 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008519-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8zs6wc
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Solandra guttata D.Don"
 ]
}

 The dataset includes 117 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008520-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qk3d9z
title: Occurrence Download

description: A dataset containing 195 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-120 -60,-25 -60,-25 30,-120 30,-120 -60))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Polychrus acutirostris Spix, 1825"
 ]
}

 The dataset includes 195 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008521-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h2tjd5
title: Occurrence Download

description: A dataset containing 1409 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Hippophae rhamnoides L.",
 "Year 1949-2024"
 ]
}

 The dataset includes 1409 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008522-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vbdmv3
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Human Observation)",
 "CoordinateUncertaintyInMeters 0.0-5000.0",
 "Country is one of (Hong Kong, Chinese Taipei, China, Macao)",
 "TaxonKey is Ciconia nigra (Linnaeus, 1758)",
 "Year 2014-2023"
 ]
}

 The dataset includes 81 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008523-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmr4qy
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-120 -60,-25 -60,-25 30,-120 30,-120 -60))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dermatonotus muelleri (Boettger, 1885)"
 ]
}

 The dataset includes 110 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008524-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ynwtp
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Solandra guttata D.Don"
 ]
}

 The dataset includes 21 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008525-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/vmbrpkuq
title: Data from the "Back to the water" project

description: Data from papers published as part of Leverhulme Trust Research Project Grant (RPG-2019-323): Back to the water: macroevolutionary dynamics of secondarily aquatic tetrapods.

These data have been used in two papers. 

&gt; **Paper 1**: Burin, G., Park, T., James, T.D, Slater, G.J. & Cooper, N. 2023. The dynamic adaptive landscape of cetacean body size. Current Biology, 33, 1787–1794. DOI: 10.1016/j.cub.2023.03.014.

See `README_PAPER1.md` and https://github.com/gburin/bodysize-evolution-cetacea for more details.

&gt; **Paper 2**: Park, T., Burin, G., Lazo-Cancino, D., Rees, J.P.G., Rule, J.P., Slater, G.J., Cooper, N. 2024. Charting the course of pinniped evolution: insights from molecular phylogeny and fossil record integration. Evolution, 78, 1212-1226. DOI: 10.1093/evolut/qpae061. 

See `README_PAPER2.md` and https://github.com/nhcooper123/pinniped-macro for more details.
DOI: 10.5517/ccdc.csd.cc2fr1w4
title: CCDC 2256486: Experimental Crystal Structure Determination

description: Related Article: Damien Bissessar, Julien Egly, Thierry Achard, Thibault Thierry, Pascal Steffanut, Valerio Giuso, Matteo Mauro, Stéphane Bellemin-Laponnaz|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fr1x5
title: CCDC 2256487: Experimental Crystal Structure Determination

description: Related Article: Damien Bissessar, Julien Egly, Thierry Achard, Thibault Thierry, Pascal Steffanut, Valerio Giuso, Matteo Mauro, Stéphane Bellemin-Laponnaz|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fr1y6
title: CCDC 2256488: Experimental Crystal Structure Determination

description: Related Article: Damien Bissessar, Julien Egly, Thierry Achard, Thibault Thierry, Pascal Steffanut, Valerio Giuso, Matteo Mauro, Stéphane Bellemin-Laponnaz|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.2y9axn
title: Occurrence Download

description: A dataset containing 21188 species occurrences available in GBIF matching the query:
{
 "and" : [
 "IucnRedListCategory is VU",
 "TaxonKey is Dugong dugon (Müller, 1776)"
 ]
}

 The dataset includes 21188 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008527-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3f6kf
title: Occurrence Download

description: A dataset containing 11353 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Human Observation)",
 "CoordinateUncertaintyInMeters 0.0-5000.0",
 "Country is one of (Hong Kong, Chinese Taipei, China, Macao)",
 "TaxonKey is Egretta garzetta (Linnaeus, 1766)",
 "Year 2014-2023"
 ]
}

 The dataset includes 11353 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008528-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/8o9v9349
title: Sex biases and the scarcity of sex metadata in global herpetology collections

description: Data from paper: **Sex biases and the scarcity of sex metadata in global herpetology collections**. https://academic.oup.com/biolinnean/article/142/3/308/7287291.

&gt; Tara Wainwright, Morwenna Trevenna, Sarah R. Alewijnse, Patrick D. Campbell, Marc E.H. Jones, Jeff W. Streicher & Natalie Cooper. 2024. Sex biases and the scarcity of sex metadata in global herpetology collections. Biological Journal of the Linnean Society. 142, 308-318. DOI: 10.1093/biolinnean/blad129.

The analyses require the two tidied datasets `all-specimen-data.csv` (unzipped) and `all-extra-data.csv`. Raw data sources used to build these are listed in the metadata. More details can be found at https://github.com/nhcooper123/sex-bias-herps.
DOI: 10.5281/zenodo.11083555
title: Data from Selectivity filter mutations shift ion permeation mechanism in potassium channels

description: Example mdp, gro files, topologies, scripts, run input files and trajectories used in https://doi.org/10.1101/2023.04.17.537168
DOI: 10.5281/zenodo.11083556
title: Data from Selectivity filter mutations shift ion permeation mechanism in potassium channels

description: Example mdp, gro files, topologies, scripts and run input files used in https://doi.org/10.1101/2023.04.17.537168
DOI: 10.5281/zenodo.11085488
title: Data from Selectivity filter mutations shift ion permeation mechanism in potassium channels

description: Example mdp, gro files, topologies, scripts and run input files used in https://doi.org/10.1101/2023.04.17.537168
DOI: 10.5281/zenodo.12623504
title: Data from Selectivity filter mutations shift ion permeation mechanism in potassium channels

description: Example mdp, gro files, topologies, scripts, run input files and trajectories used in https://doi.org/10.1101/2023.04.17.537168
DOI: 10.5281/zenodo.12605234
title: Svalbox-DOM_2023-0028

description: Model description: Scott Keltiefjellet is a moutains located in the southeastern side of Woofjorden. It displyas old red sandstones from Wood Bay formaton, Andree Land Group, caped by miocene lavas of the Seidfjellet formation.Data availability:All uploaded archives are to be extracted to the same directory for a functional working environment, i.e., at the very least consisting of a project folder with the data and metashape subdirectories. The included processing report specifies the processing parameters that were used as input for the processing software (Agisoft Metashape, v2.1.0.17532).Exported model data use CRS epsg:32633.Show and visualise on Svalbox.no:Through Svalbox we aim to take geoscientific research and education to the next level – with the simple motto of placing all key information and data sets in their correct spatial position. We bring modern technology, in particular cost-effective digital outcrops, to complement more than 200 years of geoscientific research on Svalbard. Finally, Svalbox provides a sustainable platform for sharing results, workflows and teaching material with the wider geoscientific community.For more information, contact the Svalbox team at svalbox[at]gmail.com.This data set forms part of the Svalbox Digital Model Database.Please cite the database alongside this resource:Betlem, Peter and Rodes, Nil and Birchall, Thomas and Dahlin, Anders and Smyrak-Sikora, Aleksandra and Senger, Kim. The Svalbox Digital Model Database: A Geoscientific Window into the High Arctic. Geosphere (2023) 19 (6): 1640-1666. https://doi.org/10.1130/GES02606.1
DOI: 10.5281/zenodo.12605235
title: Svalbox-DOM_2023-0028

description: Model description: Scott Keltiefjellet is a moutains located in the southeastern side of Woofjorden. It displyas old red sandstones from Wood Bay formaton, Andree Land Group, caped by miocene lavas of the Seidfjellet formation.Data availability:All uploaded archives are to be extracted to the same directory for a functional working environment, i.e., at the very least consisting of a project folder with the data and metashape subdirectories. The included processing report specifies the processing parameters that were used as input for the processing software (Agisoft Metashape, v2.1.0.17532).Exported model data use CRS epsg:32633.Show and visualise on Svalbox.no:Through Svalbox we aim to take geoscientific research and education to the next level – with the simple motto of placing all key information and data sets in their correct spatial position. We bring modern technology, in particular cost-effective digital outcrops, to complement more than 200 years of geoscientific research on Svalbard. Finally, Svalbox provides a sustainable platform for sharing results, workflows and teaching material with the wider geoscientific community.For more information, contact the Svalbox team at svalbox[at]gmail.com.This data set forms part of the Svalbox Digital Model Database.Please cite the database alongside this resource:Betlem, Peter and Rodes, Nil and Birchall, Thomas and Dahlin, Anders and Smyrak-Sikora, Aleksandra and Senger, Kim. The Svalbox Digital Model Database: A Geoscientific Window into the High Arctic. Geosphere (2023) 19 (6): 1640-1666. https://doi.org/10.1130/GES02606.1
DOI: 10.25574/62349
title: Chandra X-ray Observatory ObsId 62349
DOI: 10.25574/62350
title: Chandra X-ray Observatory ObsId 62350
DOI: 10.5281/zenodo.10680513
title: Glioma spatialomics dataset

description: See visium_dataset_description.csv and readme_CODEX.txt

Thirteen fresh frozen GBM samples profiled by 10x Visium

Six fresh frozen IDH mutant samples profiled by 10x Visium

Twelve fresh frozen GBM samples profiled by CODEX

One GBM organoid model profiled by CODEX

 
description: See visium_dataset_description.csv and readme_CODEX.txt for full description.
DOI: 10.5281/zenodo.11207138
title: Glioma spatialomics dataset

description: Data related to the paper "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" (Greenwald*, Galili-Darnell*, Hoefflin* et al., 2024. Cell 187(10): 2485-2501). 

See visium_dataset_description.csv and readme_CODEX.txt

Thirteen fresh frozen GBM samples profiled by 10x Visium

Six fresh frozen IDH mutant samples profiled by 10x Visium

Twelve fresh frozen GBM samples profiled by CODEX

One GBM organoid model profiled by CODEX

 
description: See visium_dataset_description.csv and readme_CODEX.txt for full description.
DOI: 10.5281/zenodo.12624108
title: Glioma spatialomics dataset

description: Data related to the paper "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" (Greenwald*, Galili-Darnell*, Hoefflin* et al., 2024. Cell 187(10): 2485-2501). 

See visium_dataset_description.csv and readme_CODEX.txt

Thirteen fresh frozen GBM samples profiled by 10x Visium

Six fresh frozen IDH mutant samples profiled by 10x Visium

Twelve fresh frozen GBM samples profiled by CODEX

One GBM organoid model profiled by CODEX

 
description: See visium_dataset_description.csv and readme_CODEX.txt for full description.
DOI: 10.5281/zenodo.12624860
title: Glioma spatialomics dataset

description: Data related to the paper "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" (Greenwald*, Galili-Darnell*, Hoefflin* et al., 2024. Cell 187(10): 2485-2501). 

See visium_dataset_description.csv and readme_CODEX.txt

Thirteen fresh frozen GBM samples profiled by 10x Visium

Six fresh frozen IDH mutant samples profiled by 10x Visium

Twelve fresh frozen GBM samples profiled by CODEX

One GBM organoid model profiled by CODEX

 
description: See visium_dataset_description.csv and readme_CODEX.txt for full description.
DOI: 10.5281/zenodo.8105467
title: Glioma spatialomics dataset

description: See visium_dataset_description.csv and readme_CODEX.txt Thirteen fresh frozen GBM samples profiled by 10x Visium Six fresh frozen IDH mutant samples profiled by 10x Visium Twelve fresh frozen GBM samples profiled by CODEX
description: See visium_dataset_description.csv and readme_CODEX.txt for full description.
DOI: 10.5281/zenodo.10654218
title: Glioma spatialomics dataset

description: See visium_dataset_description.csv and readme_CODEX.txt


Thirteen fresh frozen GBM samples profiled by 10x Visium


Six fresh frozen IDH mutant samples profiled by 10x Visium


Twelve fresh frozen GBM samples profiled by CODEX


 
description: See visium_dataset_description.csv and readme_CODEX.txt for full description.
DOI: 10.5281/zenodo.8105466
title: Glioma spatialomics dataset

description: Data related to the paper "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" (Greenwald*, Galili-Darnell*, Hoefflin* et al., 2024. Cell 187(10): 2485-2501). 

See visium_dataset_description.csv and readme_CODEX.txt

Thirteen fresh frozen GBM samples profiled by 10x Visium

Six fresh frozen IDH mutant samples profiled by 10x Visium

Twelve fresh frozen GBM samples profiled by CODEX

One GBM organoid model profiled by CODEX

 
description: See visium_dataset_description.csv and readme_CODEX.txt for full description.
DOI: 10.15468/dl.avwtbu
title: Occurrence Download

description: A dataset containing 29775 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anthocerotophyta"
 ]
}

 The dataset includes 29775 records from 434 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008529-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10459047
title: Dataset of concentrations of bisphenol A, F and S sulfates in wastewater from Spain and Portugal and back-calculation of human exposure by wastewater-based epidemiology

description: Dataset of concentrations of bisphenol A, F and S sulfates in wastewater from Spain and Portugal and back-calculation of human exposure by wastewater-based epidemiology.

Data is provided in MS Excel (xlsx) and CSV formats and contains details on WWTP characteristics, concentrations of bisphenols sulfates and extrapolated population-normalizad daily loads and different extrapolations of human exposure to bisphenols.

Further details are provided in the associated publication:

A. Estévez-Danta, R. Montes, A. Prieto, M.M. Santos, G. Orive, U. Lertxundi, J.B. Quintana, R. Rodil. Wastewater-Based Epidemiology Methodology To Investigate Human Exposure To Bisphenol A, Bisphenol F and Bisphenol S.Water Research 2024, 122016. DOI: 10.1016/j.watres.2024.122016.https://doi.org/10.1016/j.watres.2024.122016 

The data is deposited in ZENODO:

https://zenodo.org/doi/10.5281/zenodo.10459047

 

If you reuse the data, please cite the publication and ZENODO deposit mentioned above
description: FUNDING: This research was funded by the Spanish Agencia Estatal de Investigación – MCIN/AEI/10.13039/501100011033 (RED2022-134363-T, PID2020-117686RB-C32 and PID2020-117686RB-C31) and Consellería de Cultura de Galicia, Educación e Universidades (ED481A-2020/258 and ED431C 2021/06).
DOI: 10.5281/zenodo.10459046
title: Dataset of concentrations of bisphenol A, F and S sulfates in wastewater from Spain and Portugal and back-calculation of human exposure by wastewater-based epidemiology

description: Dataset of concentrations of bisphenol A, F and S sulfates in wastewater from Spain and Portugal and back-calculation of human exposure by wastewater-based epidemiology.

Data is provided in MS Excel (xlsx) and CSV formats and contains details on WWTP characteristics, concentrations of bisphenols sulfates and extrapolated population-normalizad daily loads and different extrapolations of human exposure to bisphenols.

Further details are provided in the associated publication:

A. Estévez-Danta, R. Montes, A. Prieto, M.M. Santos, G. Orive, U. Lertxundi, J.B. Quintana, R. Rodil. Wastewater-Based Epidemiology Methodology To Investigate Human Exposure To Bisphenol A, Bisphenol F and Bisphenol S.Water Research 2024, 122016. DOI: 10.1016/j.watres.2024.122016.https://doi.org/10.1016/j.watres.2024.122016 

The data is deposited in ZENODO:

https://zenodo.org/doi/10.5281/zenodo.10459047

 

If you reuse the data, please cite the publication and ZENODO deposit mentioned above
description: FUNDING: This research was funded by the Spanish Agencia Estatal de Investigación – MCIN/AEI/10.13039/501100011033 (RED2022-134363-T, PID2020-117686RB-C32 and PID2020-117686RB-C31) and Consellería de Cultura de Galicia, Educación e Universidades (ED481A-2020/258 and ED431C 2021/06).
DOI: 10.5281/zenodo.12608308
title: Dataset for Solar Panel Identification

description: This small dataset consists of 3D meshes of buildings with and without solar panels. We used this to train a DL model to extract Solar Panels, but further data pre-processing steps needs to be followed to be able to use this dataset. For every other use, please check the dataset.

These steps can be found here: https://arcg.is/Xu0nn0
DOI: 10.5281/zenodo.12608309
title: Dataset for Solar Panel Identification

description: This small dataset consists of 3D meshes of buildings with and without solar panels. We used this to train a DL model to extract Solar Panels, but further data pre-processing steps needs to be followed to be able to use this dataset. For every other use, please check the dataset.

These steps can be found here: https://arcg.is/Xu0nn0
DOI: 10.15468/dl.vkghyx
title: Occurrence Download

description: A dataset containing 21188 species occurrences available in GBIF matching the query:
{
 "and" : [
 "IucnRedListCategory is VU",
 "TaxonKey is Dugong dugon (Müller, 1776)"
 ]
}

 The dataset includes 21188 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008531-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.