cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j05d8qmx
title: CIL:11235, hepatocyte, epithelial cell. In Cell Image Library

description: Preparation: crosslinking-fixative fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: osmium tetroxide
Data qualification: Processed
description: Upper: a gap junction on the boundary between two hepatic cells shows a typical narrow and straight interface. Lower: in some preparations, gap junctions appear curved, and project into one of the cells, possibly an artifact of tissue preparation. Images by Richard Wood appear as Figures 102 (upper) and 130 (lower) from Chapter 3 (Junctional Specializations) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website.
DOI: 10.6075/j0q81bvf
title: CIL:11230, Rattus, granulosa cell. In Cell Image Library

description: Preparation: freeze_fracture/freeze_etch
Relation to intact cell: isolated subcellular component
Item type: transmission electron microscopy (TEM)
Imaging mode: illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: differences in deposition of metal shadow
Visualization methods: shadowing and plating
Data qualification: Processed
description: Gap junctions from a granulosa cell of a rat ovarian follicle. Variability in size of the gap junctions is likely an artifact of the freeze fracture preparation. Figure 99 from Chapter 3 (Junctional Specializations) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website.
DOI: 10.6075/j0tt4ps8
title: CIL:11221, Carassius auratus, Rattus, sensory epithelial cell, granulosa cell. In Cell Image Library

description: Typical organization of gap junctions as seen in thin sections (upper) and replicas of freeze-fractured cell membranes (middle and lower). Upper, gap junction from the saccular macula of a goldfish; middle, freeze-fracture preparation of a gap junction from a granulosa cell of the rat ovary; lower, freeze-fracture replica of a gap junction from the saccular macula of the goldfish. Images by K. Hama (upper, Fig. 93, lower, Fig. 95), and D. Albertini (middle, Fig. 94) from Chapter 3 (Junctional Specializations) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website.
description: Preparation: freeze_fracture/freeze_etch; crosslinking-fixative fixed tissue; microtome-sectioned tissue
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: differences in deposition of metal shadow; stain with broad specificity
Visualization methods: shadowing and plating; electron-dense stain
Data qualification: Processed
DOI: 10.6075/j0dj5dfc
title: CIL:11214, Aphrodita aculeata, glial cell (sensu Nematoda and Protostomia). In Cell Image Library

description: Preparation: crosslinking-fixative fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: osmium tetroxide
Data qualification: Processed
description: Glial cells in the nerve cord of the annelid worm, Aphrodita aculeata are rich in 10 nm filaments, and desmosomes are abundant. Figure 89 from Chapter 3 (Junctional Specializations) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website.
DOI: 10.6075/j0x065wt
title: CIL:11211, Opsanus tau, Bos taurus, capillary endothelial cell, epidermal cell, stratified squamous epithelial cell. In Cell Image Library

description: Preparation: crosslinking-fixative fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: osmium tetroxide
Data qualification: Processed
description: Upper: capillary endothelial cell junction in the rete mirabile of the gas bladder of the toadfish Opsanus tau shows dense intracelluular plaques and the central dense line in the intercellular space, characteristics that define desmosomes. Flanking this junction are other smaller and less highly organized densities with few, or no tonofilaments (asterisks). Lower: Desmosomes are abundant in the stratum spinosum of the epidermis from the muzzle of the cow, Bos taurus, an epithelium that is constantly subjected to flexion and attrition during grazing. Lower image contributed by Gida Matoltsy. Figures 85 (upper) and 86 (lower) from Chapter 3 (Junctional Specializations) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website.
DOI: 10.6075/j0pv6jm7
title: CIL:1121, Caenorhabditis elegans, muscle cell. In Cell Image Library

description: The purpose of the dataset C. elegans muscle aging is to deduce the age of the nemathode based on images of muscles. Images of C. elegans were taken at different chronological ages. This image is part of the day 4 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
description: C. elegans muscle age is a data set of fluorescence 20X microscopy images of C. elegans nematodes stained with phalloidin to visualize actin in muscles at different ages (1,2,4, and 8). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1005, 1057, 1105, and 1265, respectively.
description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: phalloidin
Processing history: unprocessed raw data
DOI: 10.6075/j0n878m4
title: CIL:11192, Cavia porcellus, Sertoli cell. In Cell Image Library

description: Sertoli-Sertoli occluding junctions from guinea pig testis. Figures 67 (left) and 68 (right) from Chapter 3 (Junctional Specializations) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website.
description: Preparation: freeze_fracture/freeze_etch
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: differences in deposition of metal shadow
Visualization methods: shadowing and plating
Data qualification: Processed
DOI: 10.6075/j0p55mb6
title: CIL:11199, Rattus, ependymal cell, epithelial cell. In Cell Image Library

description: These examples of ependymal epithelium from the rat brain represent epithelia that lack zonulae occludentes. Further, there appears to be no consistent order to the junctional specializations that are present between these cells. Images courtesy of Enrico Mugnaini, are Figure 73 (upper), 74 (middle), 75 (lower) from Chapter 3 (Junctional Specializations) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website.
description: Preparation: crosslinking-fixative fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: osmium tetroxide
Data qualification: Processed
DOI: 10.6075/j0vd6xpr
title: CIL:1119, Caenorhabditis elegans, muscle cell. In Cell Image Library

description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: phalloidin
Processing history: unprocessed raw data
description: The purpose of the dataset C. elegans muscle aging is to deduce the age of the nemathode based on images of muscles. Images of C. elegans were taken at different chronological ages. This image is part of the day 4 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
description: C. elegans muscle age is a data set of fluorescence 20X microscopy images of C. elegans nematodes stained with phalloidin to visualize actin in muscles at different ages (1,2,4, and 8). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1005, 1057, 1105, and 1265, respectively.
DOI: 10.6075/j0hm578p
title: CIL:11180, Rattus, epithelial cell. In Cell Image Library

description: Preparation: crosslinking-fixative fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: osmium tetroxide
Data qualification: Processed
description: Electron micrograph of the junctional complex of intestinal epithelial cells of the rat shows the apical-most zonula occludens (tight junction), the zonula adherens (medium junction) and the macula adherens (desmosome). Image published in Faquhar and Palade, J. Cell Biol. 17: 375-412, 1963 and reprinted with permission as Figure 61 from Chapter 3 (Junctional Specializations) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website.
DOI: 10.6075/j0513wzs
title: CIL:11108, Bufo, squamous epithelial cell. In Cell Image Library

description: Preparation: critical_point dried specimen
Item type: scanning electron microscopy (SEM)
Imaging mode: illumination by electrons; secondary_electron imaging
Parameter imaged: secondary electron generation
Data qualification: Processed
description: Scanning electron micrograph of the lumenal surface of the toad bladder shows the boundaries of four polygonal squamous epithelial cells surrounding a mitochondrial-rich cell bearing short globular microvilli. Boundaries between cells are demarcated by what appears to be a continuous ridge. Image from Davis, Goodman, & Schuster (1974) J. Cell Biol. 61:544-547 and reprinted with permission as Figure 39 from Chapter 2 (Specializations of the Free Surface) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website.
DOI: 10.6075/j07w6b00
title: CIL:11102, Mus musculus, peritoneal macrophage. In Cell Image Library

description: Rapid extension of microvilli on the surface of a peritoneal macrophage, induced by treatment with a metabolic inhibitor, sodium azide, after 20 minutes at 22° C. Microvilli on neighboring lymphocytes in the upper left and right corners do not respond to this treatment. Image by Emma Shelton, Figure 36 from Chapter 2 (Specializations Of The Free Surface) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website.
description: Preparation: critical_point dried specimen
Relation to intact cell: dispersed cells in vitro
Item type: scanning electron microscopy (SEM)
Imaging mode: illumination by electrons; secondary_electron imaging
Parameter imaged: secondary electron generation
Data qualification: Processed
DOI: 10.6075/j00r9nmc
title: CIL:111, Mus musculus, sensory neuron. In Cell Image Library

description: This is a section of methanol-fixed, cryostat-sectioned (10 micrometers thick) adult mouse cervical dorsal root ganglion, labeled with antibodies to peripherin (green) and neurofilament protein NF-M (red) components of the intermediate filament cytoskeleton. Note that small diameter neurons and small-caliber fibers, seen in the lower half of the image, are enriched in peripherin. Large-size neurons and thick-caliber fibers are enriched in NF proteins.
 
 Microscope - Zeiss Axioplan I
 Illumination - Mercury arc lamp
 Objective - 40X oil/NA 0.9
 Intermediate lens between obj and camera - 0.63X
 Camera - Axiocam MRM CCD
 Filters:
 1. Ex 485/20 BP, Em 515-565 BP
 2. Ex 560/40, Em 630/60
description: Preparation: coagulating-fixative fixed tissue
Relation to intact cell: cryostat-sectioned tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: Alexa Fluor 488; Alexa Fluor 594; primary antibody plus labeled secondary antibody
Processing history: unprocessed raw data
Data qualification: Raw
DOI: 10.6075/j0222t1w
title: CIL:1111, Caenorhabditis elegans, muscle cell. In Cell Image Library

description: The purpose of the dataset C. elegans muscle aging is to deduce the age of the nemathode based on images of muscles. Images of C. elegans were taken at different chronological ages. This image is part of the day 4 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
description: C. elegans muscle age is a data set of fluorescence 20X microscopy images of C. elegans nematodes stained with phalloidin to visualize actin in muscles at different ages (1,2,4, and 8). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1005, 1057, 1105, and 1265, respectively.
description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: phalloidin
Processing history: unprocessed raw data
DOI: 10.34810/data919
title: Register of green-roof activities: database application
title: Project Verd de Proximitat BCN

description: This repository contains a web application (written in Flask, Python) that allows green roofs (and other locations) to register held activities. All entires are automatically added to an SQLite database. In its presented form, six green roofs of Barcelona are included, but this can be customised as wished.

An empty database file is provided along with the SQLite schema to generate the tables. The Python code is also included in order to allow the application to be offered through a server.

The application registers internal and external activities, alongside different fields of data that allow the characterisation of indicators related to the social performance of the roof. The menu is offered in Catalan, but can be customised for other languages. The list of external activity types can be expanded and edited. Moreover, each activity entry can be edited after its creation.
description: The application is written in Flask (Python) and needs to be run on a Linux/BSD server. Once on a server, the application runs in any browser. 

The resulting database is a sigle SQLite file that can be edited and processed with any SQLite application, like DB Browser for SQLite.
DOI: 10.6075/j01r6pbc
title: CIL:11202, Rhodnius prolixus, epithelial cell. In Cell Image Library

description: Preparation: freeze_fracture/freeze_etch
Relation to intact cell: isolated subcellular component
Item type: transmission electron microscopy (TEM)
Imaging mode: illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: differences in deposition of metal shadow
Visualization methods: shadowing and plating
Data qualification: Processed
description: Freeze-fracture images of continuous junctions along epithelial cells from the midgut of Rhodnius prolixus. Figures 78 (upper) and 79 (lower) by Nancy Lane, from Chapter 3 (Junctional Specializations) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website.
DOI: 10.6075/j0gh9gr1
title: CIL:11201, Siphonaptera, unclassified Insecta, gut absorptive cell, epithelial cell. In Cell Image Library

description: Preparation: crosslinking-fixative fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: osmium tetroxide
Data qualification: Processed
description: Epithelia of invertebrates contain zona continua and septate junctions not found in mammals. Left, zonula continua from gut epithelium of a flea; right, septate junction from the midgut epithelium of an insect. Left image by Susumu Ito; right courtesy of Jean Gouranton are Figures 76 and 77 respectively, from Chapter 3 (Junctional Specializations) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website.
DOI: 10.5281/zenodo.17492593
title: Lateral dominance and cognitive–motor performance in elite athletes: a virtual reality study

description: Virtual Reality (VR) is increasingly employed in sports science as an ecological and standardized tool to assess cognitive–motor skills. This study investigated the influence of lateral dominance on response time (RT) in elite athletes from two structurally distinct situational sports: volleyball (symmetrical motor demands) and fencing (asymmetrical motor demands).  A secondary objective is to explore the correlation between dynamic visual attention and RT in elite athletes.

Eighty-five elite athletes (41 volleyball players, 44 fencers) underwent VR-based assessments of RT (VR-CNS Sprint Software) and dynamic visual attention (VR-Brain Tracker Software).
DOI: 10.6075/j0s181t4
title: CIL:1120, Caenorhabditis elegans, muscle cell. In Cell Image Library

description: The purpose of the dataset C. elegans muscle aging is to deduce the age of the nemathode based on images of muscles. Images of C. elegans were taken at different chronological ages. This image is part of the day 4 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
description: C. elegans muscle age is a data set of fluorescence 20X microscopy images of C. elegans nematodes stained with phalloidin to visualize actin in muscles at different ages (1,2,4, and 8). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1005, 1057, 1105, and 1265, respectively.
description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: phalloidin
Processing history: unprocessed raw data
DOI: 10.5281/zenodo.17492592
title: Lateral dominance and cognitive–motor performance in elite athletes: a virtual reality study

description: Virtual Reality (VR) is increasingly employed in sports science as an ecological and standardized tool to assess cognitive–motor skills. This study investigated the influence of lateral dominance on response time (RT) in elite athletes from two structurally distinct situational sports: volleyball (symmetrical motor demands) and fencing (asymmetrical motor demands).  A secondary objective is to explore the correlation between dynamic visual attention and RT in elite athletes.

Eighty-five elite athletes (41 volleyball players, 44 fencers) underwent VR-based assessments of RT (VR-CNS Sprint Software) and dynamic visual attention (VR-Brain Tracker Software).
DOI: 10.6075/j0zc822p
title: CIL:11849, Haemanthus katharinae, endosperm. In Cell Image Library

description: Preparation: formaldehyde fixed tissue
Relation to intact cell: microtome-sectioned tissue
Item type: film
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: elastic scattering of electrons
Visualization methods: uranyl salt
Processing history: unprocessed raw data
description: Dividing cells from the liquid endosperm of the lily Haemanthus katherinae were fixed with paraformaldehye, embedded in epoxy, and 0.5 micrometer sections prepared. Images were obtained with the Wisconsin high voltage TEM at 1MEV. For this micrograph of interphase, the grid was tilted to 40 degrees. A similar micrograph tilted to 60 degrees is grouped with this image, making a stereo pair that provides an oblique 3D view.
DOI: 10.6075/j0ng4q0c
title: CIL: 50695, FIB-SEM Dataset of anti-PKHD1L1 Immuno-Gold Labeled Outer Hair Cell Stereocilia Bundles. In Cell Image Library

description: Imaging mode: Serial electron microscopy; focused ion beam scanning electron mictoscopy (FIB-SEM)
Visualization methods: Heavy metal stain (osmium tetroxide, potassium ferrocyanide, tannic acid), immunogold labeling using 10 nm gold beads
description: Images were acquired with FEI Helios FIB-SEM, using backscatter detector from an epoxy resin embedded inner ear Organ of Corti sample. 
2.7_Cell_2_Surface_Rendering is a compressed (zipped) folder containing all files required to render the surface of the bundle. Also included is the ‘ProjectLog’ file produced by Slice and View acquisition software.
This file is a part of Dataset 2, comprised of files related to the Cell #2 of current study. The numbering order of the files reflects the order of operations performed during the analysis.
description: FIB-SEM Dataset of anti-PKHD1L1 Immuno-Gold Labeled Outer Hair Cell Stereocilia Bundles. Postnatal day 4 mouse Inner Ear Organ of Corti labeled with anti-PKHD1L1 antibody (10 nm gold beads). The dataset represents the apical end of the Outer Hair Cell with the stereocilium bundle. Images were acquired with FEI Helios FIB-SEM, using backscatter detector from an epoxy resin embedded inner ear Organ of Corti sample.