cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14608302
title: Suspected and confirmed cases of leptospirosis in a tertiary hospital in Panama, 2013-2018

description: A cohort of patients admitted from January 2013 to December 2018 to a tertiary hospital in Panama with suspected leptospirosis was retrospectively reviewed. We considered suspected cases those that had a serology test for leptospirosis requested, even if the sample was not obtained. Demographic data, clinical signs and symptoms, laboratory profile and treatment regimens were collected from medical charts. Only those patient’s whos’ medical paper records were available for review at the archives were included in the analysis. Microagglutination assay (MAT) results were used to confirm or rule out leptospirosis. This test requires obtaining paired serum or blood samples, the first one 10-12 days after onset of symptoms and the second one at least 10 days later.
DOI: 10.6084/m9.figshare.14608302.v1
title: Suspected and confirmed cases of leptospirosis in a tertiary hospital in Panama, 2013-2018

description: A cohort of patients admitted from January 2013 to December 2018 to a tertiary hospital in Panama with suspected leptospirosis was retrospectively reviewed. We considered suspected cases those that had a serology test for leptospirosis requested, even if the sample was not obtained. Demographic data, clinical signs and symptoms, laboratory profile and treatment regimens were collected from medical charts. Only those patient’s whos’ medical paper records were available for review at the archives were included in the analysis. Microagglutination assay (MAT) results were used to confirm or rule out leptospirosis. This test requires obtaining paired serum or blood samples, the first one 10-12 days after onset of symptoms and the second one at least 10 days later.
DOI: 10.5281/zenodo.4771206
title: ATV MR

description: ATV MR
DOI: 10.5281/zenodo.4771205
title: ATV MR

description: ATV MR
DOI: 10.15468/92pg53
title: Integrative descriptions of two new Macrobiotus species (Tardigrada, Eutardigrada, Macrobiotidae) from Mississippi (USA) and Crete (Greece)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vecchi, Matteo, Stec, Daniel (2021): Integrative descriptions of two new Macrobiotus species (Tardigrada, Eutardigrada, Macrobiotidae) from Mississippi (USA) and Crete (Greece). Zoosystematics and Evolution 97 (1): 281-306, DOI: http://dx.doi.org/10.3897/zse.97.65280, URL: http://dx.doi.org/10.3897/zse.97.65280
DOI: 10.3886/e129222
title: Code for: Grade Sensitivity and the Economics Major at a Women's College

description: Abstract: We use a regression-discontinuity design to estimate the causal effect of letter grades in introductory courses on the probability of choosing an Economics major at Wellesley College, a highly-selective women’s college. We find that women just above letter-grade cutoffs are 18 percentage points more likely to major in Economics than students just below, a 50% increase. The effects are larger among financial aid recipients. Grade sensitivity among women is not explained by the presence of male students or instructors; it is more plausibly explained by lower pre-college preferences for the major, and gender-specific responses to noisy signals like grades.
description: Undergraduates at Wellesley College<br>.
DOI: 10.3886/e129222v1
title: Code for: Grade Sensitivity and the Economics Major at a Women's College

description: Abstract: We use a regression-discontinuity design to estimate the causal effect of letter grades in introductory courses on the probability of choosing an Economics major at Wellesley College, a highly-selective women’s college. We find that women just above letter-grade cutoffs are 18 percentage points more likely to major in Economics than students just below, a 50% increase. The effects are larger among financial aid recipients. Grade sensitivity among women is not explained by the presence of male students or instructors; it is more plausibly explained by lower pre-college preferences for the major, and gender-specific responses to noisy signals like grades.
description: Undergraduates at Wellesley College<br>.
DOI: 10.6084/m9.figshare.13662230
title: Neighbourhood-level wMel and dengue data

description: Neighbourhood-level data on monthly wMel prevalence in Aedes aegypti and dengue notified cases, underlying the analyses and figures in the submitted manuscript 'Effectiveness of <i>Wolbachia</i>-infected mosquito deployments in reducing the incidence of dengue and chikungunya in Niteroi, Brazil: a quasi-experimental study'. The neighbourhood-level analysis (and dataset) now excludes Jurujuba neighbourhood in Zone 1 where pilot releases were conducted in 2015-16, because the wMel monitoring in 2015-16 in Jurujuba was only representative of the small release areas whereas the case data is for the whole neighbourhood.
DOI: 10.6084/m9.figshare.13662230.v1
title: Neighbourhood-level wMel and dengue data

description: Neighbourhood-level data on monthly wMel prevalence in Aedes aegypti and dengue notified cases, underlying the analyses and figures in the submitted manuscript 'Effectiveness of <i>Wolbachia</i>-infected mosquito deployments in reducing the incidence of dengue and chikungunya in Niteroi, Brazil: a quasi-experimental study'
DOI: 10.6084/m9.figshare.14502162
title: Full Annotation Table for 645 Genomes

description: Gene level annotation table for Diamond, et al. (2020) "Soils and sediments host novel archaea with divergent monooxygenases implicated in ammonia oxidation"
DOI: 10.6084/m9.figshare.14502162.v2
title: Full Annotation Table for 645 Genomes

description: Gene level annotation table for Diamond, et al. (2020) "Soils and sediments host novel archaea with divergent monooxygenases implicated in ammonia oxidation"
DOI: 10.6084/m9.figshare.14502162.v1
title: master_annotations_filt_FINAL.txt

description: Gene level annotation table for Diamond, et al. (2020) "Soils and sediments host novel archaea with divergent monooxygenases implicated in ammonia oxidation"
DOI: 10.6084/m9.figshare.14623008
title: All Predicted Proteins for 645 Genomes

description: This is the full set of 1,103,919 proteins predicted in the 645 genomes from Diamond, et al. (2020) "Soils and sediments host novel archaea with divergent monooxygenases implicated in ammonia oxidation"
DOI: 10.6084/m9.figshare.14622993.v1
title: Untitled Item

description: SRR2962435
DOI: 10.6084/m9.figshare.14622993
title: Untitled Item

description: SRR2962435
DOI: 10.5281/zenodo.4774578
title: Supporting model data for study detailing the implementation of ice nucleating particle functionality in Unified Model

description: In our recent study using the Unified Model, we have introduced a simple Ice Nucleating Particles functionality into the Unified Model to study its impact on the Southern Ocean short-wave radiation biases. By using mineral dust as an indicator for ice nucleating particles in the model, this parametrisation thus captures the impact of ice nucleating particles on the cloud distribution due to its general paucity over the Southern Ocean region. We implemented a prognostic parametrisation whereby the heterogeneous ice nucleation temperature is made to vary three-dimensionally as a function of the mineral dust distribution in the model. As a result, those regions with less dust number density would have lower nucleation temperature compared to the default global value in the model of −10C. This approach improves the physics of the model with minimal complexity. The data set included here cover all the model data used in this study/publication.
DOI: 10.5281/zenodo.4774577
title: Supporting model data for study detailing the implementation of ice nucleating particle functionality in Unified Model

description: In our recent study using the Unified Model, we have introduced a simple Ice Nucleating Particles functionality into the Unified Model to study its impact on the Southern Ocean short-wave radiation biases. By using mineral dust as an indicator for ice nucleating particles in the model, this parametrisation thus captures the impact of ice nucleating particles on the cloud distribution due to its general paucity over the Southern Ocean region. We implemented a prognostic parametrisation whereby the heterogeneous ice nucleation temperature is made to vary three-dimensionally as a function of the mineral dust distribution in the model. As a result, those regions with less dust number density would have lower nucleation temperature compared to the default global value in the model of −10C. This approach improves the physics of the model with minimal complexity. The data set included here cover all the model data used in this study/publication.
DOI: 10.6084/m9.figshare.14623563.v3
title: data for "Staying in touch: how highly specialised moth pollinators track host plant phenology in unpredictable climates"

description: Abundance of Epicephala spp. moths observed at the EucFACE field site from 4/11/2016 to 26/11/2017
DOI: 10.6084/m9.figshare.14623872.v1
title: data for "Staying in touch: how highly specialised moth pollinators track host plant phenology in unpredictable climates"

description: Counts of pollen grains and insects found in the overwintering female flowers of Breynia oblongifolia at Richmond NSW
DOI: 10.6084/m9.figshare.14623641.v3
title: data for "Staying in touch: how highly specialised moth pollinators track host plant phenology in unpredictable climates"

description: Counts of female flowers, male flowers, developing fruits and mature fruits across 80 Breynia oblongifolia plants from 4 sites in NSW from 30/09/2015 to 4/11/2017. Climatic data for each survey is also provided at varying intervals prior to each survey (i.e. 0, 15 and 28 days)
DOI: 10.6084/m9.figshare.14623641.v2
title: data for "Staying in touch: how highly specialised moth pollinators track host plant phenology in unpredictable climates"

description: Counts of female flowers, male flowers, developing fruits and mature fruits across 80 Breynia oblongifolia plants from 4 sites in NSW from 30/09/2015 to 4/11/2017. Climatic data for each survey is also provided at varying intervals prior to each survey (i.e. 0, 15 and 28 days)
DOI: 10.6084/m9.figshare.14623641.v1
title: data for "Staying in touch: how highly specialised moth pollinators track host plant phenology in unpredictable climates"

description: Counts of female flowers, male flowers, developing fruits and mature fruits across 80 Breynia oblongifolia plants from 4 sites in NSW from 30/09/2015 to 4/11/2017. Climatic data for each survey is also provided at varying intervals prior to each survey (i.e. 0, 15 and 28 days)
DOI: 10.6084/m9.figshare.14623563.v1
title: data for "Staying in touch: how highly specialised moth pollinators track host plant phenology in unpredictable climates"

description: Abundance of Epicephala spp. moths observed at the EucFACE field site from 4/11/2016 to 26/11/2017
DOI: 10.6084/m9.figshare.14623508.v1
title: Additional file 1 of Multicopy targets for Plasmodium vivax and Plasmodium falciparum detection by colorimetric LAMP

description: Additional file 1. Malaria Diagnosis data.
DOI: 10.6084/m9.figshare.14623453.v1
title: Additional file 3 of Production losses attributable to suicide deaths in European Union

description: Additional file 3. Dataset.
DOI: 10.6084/m9.figshare.14623450.v1
title: Additional file 2 of Production losses attributable to suicide deaths in European Union

description: Additional file 2. Detailed, country-specific sensitivity analysis for estimates of production losses attributable to suicide deaths in European Union countries.
DOI: 10.6084/m9.figshare.14623447.v1
title: Additional file 1 of Production losses attributable to suicide deaths in European Union

description: Additional file 1. Country-specific age groups distribution of production losses attributable to suicide mortality in European Union countries.
DOI: 10.6084/m9.figshare.14623435.v1
title: Additional file 1 of A comparative genomic approach using mouse and fruit fly data to discover genes involved in testis function in hymenopterans with a focus on Nasonia vitripennis

description: Additional file 1: Table S1. List of the 546 mouse genes expressed exclusively or predominantly in testes according to the Unigene “EST profile” database used for the approach 1, and their (co)-orthologs in Drosophila melanogaster retrieved with the Biomart tool. Table S2. Enriched « Biological Process» GO Terms for mouse genes expressed exclusively or predominantly in the testis (n = 447) (adjusted p-value
DOI: 10.6084/m9.figshare.14623432.v1
title: Additional file 9 of Investigating the impact of reference assembly choice on genomic analyses in a cattle breed

description: Additional file 9 Table S6: Summary of the annotated sequence ontology classes of SNPs and INDELs. SO terms are described by Ensembl. Total number of high-quality and non-fixed annotated SNPs and INDELs for both assemblies that were annotated using the release 101 annotation files with VEP tool.
DOI: 10.6084/m9.figshare.14623426.v1
title: Additional file 7 of Investigating the impact of reference assembly choice on genomic analyses in a cattle breed

description: Additional file 7 Table S5: Number and percentage of multiallelic variants. Percentage of multiallelic variants is obtained from the division of multiallelic variants to non-fixed high-quality variants. Multiallelic variants are identified when the ‘-min-alleles 2 –max-alleles 2‘ flag is set in VCFtools. Alleles not in Hardy-Weinberg proportions are the number of variants with P-value below the threshold of 10-8 when testing for Hardy-Weinberg proportions with PLINK. Percentages are between parentheses.
DOI: 10.6084/m9.figshare.14623423.v1
title: Additional file 6 of Investigating the impact of reference assembly choice on genomic analyses in a cattle breed

description: Additional file 6 Table S4: Density of high-quality and non-fixed variants per Kb along the autosomal genome. Unlike Table 3 in the main text, densities are calculated here when chromosome 12 is not considered.
DOI: 10.6084/m9.figshare.14623414.v1
title: Additional file 3 of Investigating the impact of reference assembly choice on genomic analyses in a cattle breed

description: Additional file 3 Table S3: Number of variants during the different filtering steps: from original variants to high-quality and non-fixed variants. Original variants are considered as the raw variants retrieved from GATK. Low quality variants are discarded during hard-filtering and fixed variants are identified when the minor allele count (MAC) is set to 1 in VCFtools. The percentage of variants to the original variants before hard-filtering are in parentheses.
DOI: 10.6084/m9.figshare.14623411.v1
title: Additional file 2 of Investigating the impact of reference assembly choice on genomic analyses in a cattle breed

description: Additional file 2 Table S2: Number of mapped reads contained in the original files but not considered for our study. Number of reads mapped to sexual chromosomes and to unplaced contigs for both assemblies. Low quality mapping includes the number of reads filtered out when considering only uniquely mapped properly paired reads with a mapping quality threshold of 10. Sample-wise mean and standard deviation can be found between parentheses. The length of the sexual chromosomes and unplaced contigs is also included.
DOI: 10.6084/m9.figshare.14623408.v1
title: Additional file 1 of Investigating the impact of reference assembly choice on genomic analyses in a cattle breed

description: Additional file 1 Table S1: BSW cattle IDs. Accession IDs of the 161 bovine samples used for our study.
DOI: 10.6084/m9.figshare.14623396.v1
title: Additional file 11 of Investigating the impact of reference assembly choice on genomic analyses in a cattle breed

description: Additional file 11 Table S8: Candidate selection signatures detected using UOA_Angus_1 as reference. Genomic coordinates, CLR values, P-values and encompassed genes for 33 candidate selection signatures.
DOI: 10.6084/m9.figshare.14623395.v2
title: CAGE peaks for human

description: FANTOM5 was made possible by a Research Grant for RIKEN Omics Science Center from MEXT to Yoshihide Hayashizaki and a Grant of the Innovative Cell Biology by Innovative Technology (Cell Innovation Program) from the MEXT, Japan to Yoshihide Hayashizaki and to the RIKEN Center for Life Science Technologies.
DOI: 10.6084/m9.figshare.14623395.v1
title: CAGE peaks for human

description: FANTOM5 was made possible by a Research Grant for RIKEN Omics Science Center from MEXT to Yoshihide Hayashizaki and a Grant of the Innovative Cell Biology by Innovative Technology (Cell Innovation Program) from the MEXT, Japan to Yoshihide Hayashizaki and to the RIKEN Center for Life Science Technologies.
DOI: 10.6084/m9.figshare.14623393.v1
title: Additional file 10 of Investigating the impact of reference assembly choice on genomic analyses in a cattle breed

description: Additional file 10 Table S7: Candidate selection signatures detected using ARS-UCD1.2 as reference. Genomic coordinates, CLR values, P-values and encompassed genes for 40 candidate selection signatures.
DOI: 10.6084/m9.figshare.14623378.v1
title: Additional file 1 of Association between water and sanitation and soil-transmitted helminthiases: Analysis of the Brazilian National Survey of Prevalence (2011–2015)

description: Raw Database. Database containing all variables (outcome and explanatory) used in the study.
DOI: 10.6084/m9.figshare.14623366.v1
title: Additional file 7 of The symbiotic relationship between Caenorhabditis elegans and members of its microbiome contributes to worm fitness and lifespan extension

description: Additional file 7: Lifespan of the worms grown with E. coli OP50 in the presence or absence of vitamin B6. Lifespan values and related statistics for the worms grown with E. coli OP50 alone or E. coli OP50 plus vitamin B6 are shown. Median and maximum lifespans of worms grown with E. coli OP50 supplemented with vitamin B6 were significantly higher, compared to control (P = 0.0382 for median lifespan and P = 0.0402 for maximum lifespan). No worms were censored.
DOI: 10.6084/m9.figshare.14623363.v1
title: Additional file 6 of The symbiotic relationship between Caenorhabditis elegans and members of its microbiome contributes to worm fitness and lifespan extension

description: Additional file 6: Nanopore sequencing of bacteria genomes. The number of the contigs, length and annotated genes for each bacterial isolate and E. coli OP50 are shown.
DOI: 10.6084/m9.figshare.14623354.v1
title: Additional file 3 of The symbiotic relationship between Caenorhabditis elegans and members of its microbiome contributes to worm fitness and lifespan extension

description: Additional file 3: Differentially expressed genes between worms grown with different bacterial isolates. Differentially expressed genes between worms grown with E. coli OP50 and Chryseobacterium sp. CHNTR56 MYb120 or Comamonas sp. 12022 MYb131 were determined by edgeR and ranked based on FDR.
DOI: 10.6084/m9.figshare.14623348.v1
title: Additional file 1 of The symbiotic relationship between Caenorhabditis elegans and members of its microbiome contributes to worm fitness and lifespan extension

description: Additional file 1: List of native bacterial isolates of C. elegans and susceptibility to antibiotics. A total of 16 native bacterial isolates, used in this study, is shown with phylum to family information (based on NCBI) and their growth/non-growth status under certain antibiotic treatments.
DOI: 10.6084/m9.figshare.14623285.v1
title: Additional file 4 of Insights into the genome architecture and evolution of Shiga toxin encoding bacteriophages of Escherichia coli

description: Additional file 4. Shared gene content matrix. Phamerator output (1,838 phams) was converted to a matrix of shared gene content. Heat map was created in excel.
DOI: 10.6084/m9.figshare.14623282.v1
title: Additional file 3 of Insights into the genome architecture and evolution of Shiga toxin encoding bacteriophages of Escherichia coli

description: Additional file 3. Phams identified in the Stx phages dataset. The dataset includes 279 Stx phages, encoding a total of 24,970 predicted proteins sorted into 1,838 phamilies (phams) of related proteins, 677 of which were identified as orphans (genes without related sequences) using Phamerator.
DOI: 10.6084/m9.figshare.14623279.v1
title: Additional file 2 of Insights into the genome architecture and evolution of Shiga toxin encoding bacteriophages of Escherichia coli

description: Additional file 2. STEC Stx phages information. The information for all 279 Stx phages used in the final dataset is provided. Phages were characterized for: sequence length, number of proteins, cluster, predicted family, similar phage (hit of BlastN, query cover, E-value, percentage identity), Stx subtype/variant, the lysogen O-type, as well as origin (source of isolation) and country of isolation. For those retrieved directly from GenBank database, the reference article is provided. w/o, information not available.
DOI: 10.6084/m9.figshare.14623276.v1
title: Additional file 1 of Insights into the genome architecture and evolution of Shiga toxin encoding bacteriophages of Escherichia coli

description: Additional file 1. E. coli strains information. Serotype and Virulence tab contains the information of all 787 strains, while the Stx carriers tab has only the strains where at least one stx gene is found. For all strains, the O and H antigens, stx genes, origin (source of isolation) and country of isolation is provided, using SerotypeFinder, information retrieved from GenBank or from a reference article (when available). w/o, information not available.
DOI: 10.6084/m9.figshare.14623268.v1
title: Additional file 3 of Historical biogeography, systematics, and integrative taxonomy of the non-Ethiopian speckled pelage brush-furred rats (Lophuromys flavopunctatus group)

description: Additional file 3: Table S4. A detailed list of all samples used in the study, with sampling coordinates, locality names, and external measurements, among other details.
DOI: 10.5517/ccdc.csd.cc1ljh4r
title: CCDC 1475604: Experimental Crystal Structure Determination

description: Related Article: Shuangyu Wu, Bowen Qin, Yaling Zhao, Xiaoying Zhang, Jingping Zhang|2021|Cryst.Growth Des.|21|2754|doi:10.1021/acs.cgd.0c01643
DOI: 10.5517/ccdc.csd.cc1ljh5s
title: CCDC 1475605: Experimental Crystal Structure Determination

description: Related Article: Shuangyu Wu, Bowen Qin, Yaling Zhao, Xiaoying Zhang, Jingping Zhang|2021|Cryst.Growth Des.|21|2754|doi:10.1021/acs.cgd.0c01643
DOI: 10.5517/ccdc.csd.cc1nxmmt
title: CCDC 1546857: Experimental Crystal Structure Determination

description: Related Article: Shuangyu Wu, Bowen Qin, Yaling Zhao, Xiaoying Zhang, Jingping Zhang|2021|Cryst.Growth Des.|21|2754|doi:10.1021/acs.cgd.0c01643
DOI: 10.5517/ccdc.csd.cc1nxmnv
title: CCDC 1546858: Experimental Crystal Structure Determination

description: Related Article: Shuangyu Wu, Bowen Qin, Yaling Zhao, Xiaoying Zhang, Jingping Zhang|2021|Cryst.Growth Des.|21|2754|doi:10.1021/acs.cgd.0c01643
DOI: 10.5517/ccdc.csd.cc1nxmpw
title: CCDC 1546859: Experimental Crystal Structure Determination

description: Related Article: Shuangyu Wu, Bowen Qin, Yaling Zhao, Xiaoying Zhang, Jingping Zhang|2021|Cryst.Growth Des.|21|2754|doi:10.1021/acs.cgd.0c01643