cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/26dgps7tsg
title: Personalized Prediction of rTMS Clinical Response in Medication-Refractory Depression Data

description: This article describes a dataset that was generated as part of the article: Personalized prediction of transcranial magnetic stimulation clinical response in patients with treatment-refractory depression using neuroimaging biomarkers and machine learning (DOI: 10.1016/j.jad.2021.04.081). We collected resting-state functional Magnetic Resonance Imaging data from 70 medication-refractory depressed subjects before undergoing four weeks of repetitive transcranial magnetic stimulation targeting the left dorsolateral prefrontal cortex. The data presented here include information about the seed-based analyses to identify connectivity biomarkers of treatment response, such as regions of interest/seeds, individual/group functional connectivity maps and second-level analysis contrast maps. The contrast maps are controlled for age, gender, duration of the current depressive episode, duration since the first depressive episode, and symptom scores. Demographics, clinical characteristics, and categorical treatment response variables are reported as well. Further, the individual connectivity values of the identified neuroimaging biomarkers of long-term clinical response were used as features in the support vector machine models are presented in combination with the trained classifiers of the support vector machine models. Post hoc analyses that were not published in the original analyses are presented as well. Finally, the R or MATLAB code scripts for all figures published in the co-submitted paper are included.
DOI: 10.17632/3ympjxywdm
title: Data for: Comparison of Multi-response Prediction Methods

description: Dataset: NIR_Dough --------------------------- Number of Observations: 72 A list of three items: NIR: A matrix of dimension 72 x 700 Ingredient: A matrix of dimension 72 x 4 train: A logical vector representing test and training samples Dataset: Raman-PUFA ----------------------------- Number of Observations: 1096 A list of three items: Raman: A matrix of dimension 69 x 1096 Pufa: A matrix of dimension 69 x 2 train: A logical vector representing test and training samples
DOI: 10.17632/h9z94f9y6p
title: Systematic Directed Evolution. (PRANCE). 

description: Real-time monitoring data for PRANCE directed evolution. Raw data contained in .db files and annotated with associated manifest.csv files. NGS files for qtRNA population sequencing are uploaded as FASTQ files, with associated barcode files for each qtRNA and time stamp.
DOI: 10.6084/m9.figshare.27950595.v1
title: Supplementary Material for: ANESTHETIC MANAGEMENT OF RENAL TUMOR WITH LEVEL 3 INFERIOR VENA CAVA EXTENSION AT A UNIVERSITY HOSPITAL IN VIETNAM: A CASE REPORT

description: Background: Renal tumors with inferior vena cava (IVC) invasion pose significant challenges for surgical and anesthetic management. This report presents the anesthetic management of a patient with a level 3 IVC-invading renal tumor, emphasizing the complexity and multidisciplinary approach required.
Case Presentation: A 55-year-old woman with a large left renal tumor causing complete obstruction of the left renal vein and near-total obstruction of the IVC was admitted for surgery. Multidisciplinary planning included a nephrectomy with removal of tumor from the IVC. The patient underwent general anesthesia with extensive hemodynamic monitoring and fluid management to mitigate potential blood loss and cardiovascular instability. The surgery, lasting 5 hours, involved successful radical nephrectomy, tumor removal from the IVC, and resection of liver metastases. Postoperative recovery was without complications, and the patient was discharged 7 days.
Conclusion: Managing anesthesia for renal tumors with IVC invasion requires careful preoperative planning, invasive monitoring and multidisciplinary approach.
DOI: 10.6084/m9.figshare.28464488.v1
title: Mexico's High Resolution Climate Database (MexHiResClimDB): Monthly and yearly normals of Tmin, Tavg, Tmax and precipitation in Mexico for the 1981-2010 period

description: Monthly and yearly normals of Tmin, Tavg, Tmax and precipitation in Mexico for the 1981-2010 period. These normals were computed from the monthly values of the MexHiResClimDB which were in turn determined from the daily gridded values. <br>Filesmonthlynorm7100precip.zip Precipitation monthly normals, 1981-2010 periodmonthlynorm7100avgtmin.zip Minimum temperature monthly normals, 1981-2010 periodmonthlynorm7100avgtmax.zip Maximum temperature monthly normals, 1981-2010 periodmonthlynorm7100avgtavg.zip Average temperature monthly normals, 1981-2010 period<br>yearnorm7100precip.zip Precipitation yearly normal 1981-2010 periodyearnorm7100avgtmin.zip Minimum temperature yearly normal 1981-2010 periodyearnorm7100avgtmax.zip Maximum temperature yearly normal 1981-2010 periodyearnorm7100avgtavg.zip Average temperature yearly normal 1981-2010 period<br><br>
DOI: 10.6084/m9.figshare.5406094.v1
title: Supplementary Material for: European Thyroid Association Guidelines for Ultrasound Malignancy Risk Stratification of Thyroid Nodules in Adults: The EU-TIRADS

description: Thyroid ultrasound (US) is a key examination for the management of thyroid nodules. Thyroid US is easily accessible, noninvasive, and cost-effective, and is a mandatory step in the workup of thyroid nodules. The main disadvantage of the method is that it is operator dependent. Thyroid US assessment of the risk of malignancy is crucial in patients with nodules, in order to select those who should have a fine needle aspiration (FNA) biopsy performed. Due to the pivotal role of thyroid US in the management of patients with nodules, the European Thyroid Association convened a panel of international experts to set up European guidelines on US risk stratification of thyroid nodules. Based on a review of the literature and on the American Association of Clinical Endocrinologists, American Thyroid Association, and Korean guidelines, the panel created the novel European Thyroid Imaging and Reporting Data System, called EU-TIRADS. This comprises a thyroid US lexicon; a standardized report; definitions of benign and low-, intermediate-, and high-risk nodules, with the estimated risks of malignancy in each category; and indications for FNA. Illustrated by numerous US images, the EU-TIRADS aims to serve physicians in their clinical practice, to enhance the interobserver reproducibility of descriptions, and to simplify communication of the results.
DOI: 10.17632/cyb36wsh6c
title: In-House Electrospinner

description: This data set contains all the CAD and STL Files used and required for reproducing the in-house electrospinning hardware with three different collectors.
DOI: 10.6084/m9.figshare.28928099.v1
title: Spatial mHVSR data

description: Spatial mHVSR data for the BGS network + mHVSR curves for each station
DOI: 10.6084/m9.figshare.c.3894727_d9.v1
title: Additional file 3 of MetaComp: comprehensive analysis software for comparative meta-omics including comparative metagenomics

description: Table S3. The input functional gene APM data of Acid Mine Drainage metaproteomic samples. (XLS 83kb)
DOI: 10.17632/rv9f5tc24w
title: Unearthing the potential of psychological process in the relationship between environmental transformational leadership and employee green behavior

description: A minimal dataset has provided.
DOI: 10.17632/tn4cpwbxpm
title: Data and code associated with: Mosquitoes integrate visual and acoustic cues to mediate conspecific interactions in swarms

description: This dataset is a supplement to the article "Mosquitoes integrate visual and acoustic cues to mediate conspecific interactions in swarms ". The methods describing the generation of this data is fully described in the associated article.

Article Abstract:
Male mosquitoes form aerial aggregations, known as swarms, to attract females and maximize their chances of finding a mate. Within these swarms, individuals must be able to recognize potential mates and navigate the social environment to successfully intercept a mating partner. Prior research has almost exclusively focused on the role of acoustic cues in mediating the male mosquito’s ability to recognize and pursue flying females. However, the role of other sensory modalities in this behavior has not been explored. Moreover, how males avoid collisions with one another in the swarm while pursuing females remains poorly understood. In this study, we combined free-flight and tethered flight simulator experiments to demonstrate that swarming Anopheles coluzzii mosquitoes integrate visual and acoustic information to track conspecifics and avoid collisions. Our tethered experiments revealed that acoustic stimuli gated mosquito steering responses to visual objects simulating nearby mosquitoes, especially in males that exhibited a strong response toward visual objects in the presence of female flight tones. Additionally, we observed that visual cues alone could trigger changes in mosquitoes’ wingbeat amplitude and frequency. These findings were corroborated by our free-flight experiments, which revealed that Anopheles coluzzii modulate their flight responses to nearby conspecifics in a similar manner to tethered animals, potentially allowing for collision avoidance within swarms. Together, these results demonstrate that both males and females integrate multiple sensory inputs to mediate swarming behavior, and for males, the change in flight kinematics in response to multimodal cues might allow them to simultaneously track females while avoiding collisions.
DOI: 10.21954/ou.rd.12927464.v1
title: Dataset for a study exploring melodic similarity and contrast using a Digital Tabletop

description: Data for paper:<br><b>Sketching Music: exploring melodic similarity and contrast using a Digital Tabletop</b><b><br></b>We conducted a study in which participants explored and developed their understanding of similarity and contrast in relation to melody. We present the data collected with three of the participants. Each participant went through an initial discussion about similarity and contrast, to become aware of their own understanding of the terms. This is reflected in the Interview section. Then we asked them to classify three related melodies by whether they were pairwise similar or contrasting with each other. We used a simple inside-similar vs outside-contrasting representation on an interactive digital tabletop, and the outcomes are reflected in the Listening and classification section. The participants then engaged in an increasingly open-ended melody composition exercise in which we asked them to use alternatively similarity and contrast to complete some short melodies using alternatively similarity and contrast, and to describe their process and feelings about the resulting melodies. This is reflected in the Challenge-response and Fill-the-gaps sections. Lastly, we asked our participants to freely invent a short story and compose a whole melody to represent it. We observed their process, and we asked to reflect on it and describe it as well as the melody and the story in relation with each other.<b><br></b>
DOI: 10.6084/m9.figshare.4263317.v4
title: Genotype and phenotype dataset for GWAS analysis

description: The data belongs to the .bed, .bim and .fam files containing genotypes and an .xlxs file containing phenotypes used to perform the genome-wide association study to map the genetic determinants of carcass traits in 350 Duroc pigs.<br><br><br>. <br>
DOI: 10.17632/5w58s8hhz2
title: Mayfly optimization Algorithm - Matlab code

description: This simplified Matlab demo code shows how to use the new Mayfly Algorithm to solve global optimization problems.

Researchers are allowed to use this code in their research projects, as long as they cite as:
Zervoudakis, K., & Tsafarakis, S. (2020). A mayfly optimization algorithm. Computers & Industrial Engineering, 145, 106559. https://doi.org/10.1016/j.cie.2020.106559 

For more information go to: https://sites.google.com/view/kzervoudakis/research/metaheuristics/mayfly-algorithm
DOI: 10.17632/83k89shdx5
title: Human Kidney Proteomics

description: We collected 33 human kidney samples, gathered associated clinical, demographics information and implemented histological analysis. We performed unbiased proteomics using the SOMAscan platform and quantified the level of 1,305 proteins
DOI: 10.17632/ypfcrfxjgk
title: Geometrical shapes datasets

description: Labeled datasets of images of geometrical shapes. Can be used for training and conceptual learning of supervised and unsupervised models. Use pickle, zip to extract raw images and labels.

bw_shapes_3_1800 
grayscale, 64x64, 3 distinct types (concepts), 600 per type 1800 total
Grayscale circles, variation in shade, size, background
Grayscale triangles, variation shade, size, background
Empty (grey) backgrounds, variation in shade.
Labels: 0 - 2 (circle, triangle, background)

col_shapes_9_7200
color, 64x64, 9 distinct types (concepts), 800 per type 7200 total: 
- Two color (red, blue) circles, grey background, variation in shade, size, background
- R,b triangles, grey background, variation shade, size, background
- R,b horizontal stripes wide (red), narrow (blue) variation shade, width (r &gt; 0.5 size, b &lt; 0.5 size), background 
- R,b vertical stripes narrow (red), wide (blue) variation shade, width (r &lt; 0.5 size, b &gt; 0.5 size), background
- Empty (grey) backgrounds, variation in shade.

Labels 0,1 (circle r, b) 2,3 (triangle r, b) 4,5 (horizontal r,b) 6,7 (vertical r,b) 8 (background)

Use pickle, zip to extract raw images and labels.
DOI: 10.17632/tr9py7hzj4
title: Video Dataset of Male Basic Balinese Dance Movement for Action Recognition

description: This dataset contains videos of eleven basic male Balinese dance movements demonstrated by four male dancers. These basic movements including, agem kanan, agem kiri, gandang-gandang, malpal, nayog, nepuk kampuh, oyod, piles, seledet, tapak sirang pada, and ulap-ulap. The total number of videos is 828. The data is divided into three directories, which are train, validation, and test.
DOI: 10.6084/m9.figshare.12501461.v1
title: Experiment 1 % coverage.xlsx

description: To determine how DEX treatment in WT and MKO mice leads to muscle atrophy, we measured muscle protein fractional synthesis rates using shot-gun LC-MS/MS analysis after <i>in vivo</i> <sup>2</sup>H<sub>2</sub>O labeling . Mice were treated with PBS or DEX for 10 days. During the final 7 days, mice were also labeled with <sup>2</sup>H<sub>2</sub>O. The sample size for wild type controls treated with PBS (WT-PBS, n=6), wild type treated with DEX (WT-DEX, n=6), MKO treated with PBS (MKO-PBS, n=5) and MKO treated with DEX (MKO-DEX, n=5). The rational for biological replicates of n=5 -6 were used to ensure accurate comparison among each group. Biological replicates were chosen to asses biological variability rather than sole reliance on technical replicates. Controls included WT-PBS treated mice (n=6). Two separate dynamic proteomic experiments were completed and combined for final data analysis. This consisted of experiment 1 that included WT-PBS (n=4) and WT-DEX (n=4). Experiment 2 included the final biological replicates of WT-PBS (n=2), WT-DEX (n=2), MKO-PBS (n=5) and MKO-DEX (n=5). The data sets were combined and annotated as described by the following.<br>Entry name, accession number, group number, sub group number, number of spectra, number of unique peptides, unique score, percent coverage, coverage map, total intensity, protein molecular weight, database, parent charge, score, sequence, chromatographic peak width, parent mass to charge ratio, delta parent mass and delta parent mass in ppm are shown. <br>
DOI: 10.6084/m9.figshare.24981228.v2
title: Data supporting the findings of Keijzer et al. (2024) Threats of dams to the persistence of the world’s freshwater fishes. Global Change Biology.

description: Habitat fragmentation due to dams is a well-known threat to freshwater fish. Yet, the global consequences of fragmentation for the viability of freshwater fish populations are unknown. Here, we provide the first global assessment of the threats of dams to the persistence of freshwater fish species. We developed a global macroecological relationship between freshwater fish range size and body size and used this relationship to assess whether isolated range fragments are too small to support a species. Our assessment includes 7,369 freshwater fish species and considers the effects of 31,780 dams globally.
DOI: 10.6084/m9.figshare.27718014.v4
title: <b>All-trans retinoic acid protects against transmissible gastroenteritis virus-induced intestinal injury and intestinal epithelial apoptosis in piglets through inhibition of oxidative stress and endoplasmic reticulum stress</b>

description: This research found that ATRA protects gut health by suppressing TGEV-induced intestinal epithelial apoptosis, thereby inhibiting diarrhea in piglets. Its mechanism is related to the inhibition of oxidative stress-mediated P<sub>38</sub>MAPK/JNK signaling pathways and ERS-mediated PERK/ATF6-CHOP signaling pathways
DOI: 10.17632/ddbgcpm32x
title: [Dataset] Padina tetrastromatica-driven synthesis meets biopolymers: comprehensive profiling of starch nanoscaffolds infused with eco-friendly copper oxide nanoparticles

description: This dataset presents a detailed characterization of starch-based nanoscaffolds embedded with eco-friendly copper oxide nanoparticles (CuO NPs), synthesized using an aqueous extract of the marine brown alga Padina tetrastromatica. The green synthesis approach offers a sustainable and non-toxic alternative to conventional nanoparticle fabrication methods. To understand the physicochemical and morphological features of the developed nanoscaffolds, a suite of advanced analytical techniques was employed. UV–visible spectroscopy confirmed the formation of CuO nanoparticles through characteristic absorption peaks. FT-IR spectroscopy revealed the interaction between functional groups of the starch matrix and phytochemicals from P. tetrastromatica, highlighting their role in nanoparticle stabilization. X-ray diffraction (XRD) analysis demonstrated the crystalline nature of the CuO NPs within the scaffold. Scanning electron microscopy (SEM) provided insights into the surface topography and nanoparticle distribution, indicating uniform dispersion. Thermogravimetric analysis (TGA) evaluated the thermal stability of the nanoscaffolds, while dynamic light scattering (DLS) measured particle size distribution and colloidal stability. This dataset serves as a valuable resource for researchers focused on developing green nanomaterials for biomedical, environmental, or packaging applications, offering an eco-conscious platform for future innovations in sustainable nanotechnology.
DOI: 10.6084/m9.figshare.26531257.v1
title: Supplementary Material for: Sex disparity in the in-hospital outcomes of patients with kidney disease admitted for myocardial infarction: Insights from a large national database

description: Background: There is limited evidence as to the effect of sex on the outcomes of patients admitted for ST-elevation myocardial infarction (STEMI) who have a concomitant diagnosis of chronic kidney disease (CKD) and end-stage renal disease (ESRD). We aimed to determine if there are differences in the outcomes between males and females in these patient populations. 
Methods: Data was obtained from the National Inpatient Sample (NIS) database and patients were selected using the International Classification of Diseases, Ninth and Tenth Revision (ICD-9 and 10) codes. Hospitalizations for patients with CKD who had STEMI from 2012-2020 were included. The primary outcome of interest was in-hospital mortality. Secondary outcomes evaluated included ischemic stroke, major bleeding complications, pressor requirement, permanent pacemaker implantation, percutaneous coronary intervention, coronary artery bypass grafting, surgery, pericardiocentesis, mechanical circulatory support, and mechanical ventilation. 
Results: A total of 1,283,255 STEMI patients without CKD, 158,715 STEMI patients with CKD, and 22,690 STEMI patients with ESRD were identified and analyzed. Among patients with STEMI and CKD, females demonstrated higher in-hospital mortality compared to male counterparts (16.7% vs 12.7%, aOR=1.13, 95% CI: 1.05-1.21, p&lt;0.01). While there was no sex difference in the in-hospital mortality among STEMI patients with ESRD, female patients in this group were less likely to receive coronary artery bypass grafting and mechanical circulatory support.
Conclusion: Increased in-hospital mortality rates were shown for females admitted for STEMI with CKD. Among patients with ESRD who had STEMI, females were less likely to receive coronary artery bypass grafting and mechanical circulatory support. Further research needs to be conducted to better explain this said difference in outcomes.
DOI: 10.17632/3nrnxhnf23
title: Esteves et al. 2024 - Frontiers in Microbiology

description: Pangenome matrixes and other genomic data
DOI: 10.17632/jmx3b75vwc
title: my publications

description: My journal publications est. 2018
DOI: 10.17632/khxprpdt3z
title: Data and Code: Prediction of termination of atrial fibrillation

description: These data and code are covered in the article "Predicting spontaneous termination of Atrial Fibrillation based on Dual Path Network and feature selection". 
The "Data" folder contains: (a) clinical dynamic ECG data from Shandong Provincial Hospital; (b) selected data from AFDB database; (c) data from AFTDB database.
The "Code" folder contains the code for the network model, running tests, and related discussions for the work in the article.
DOI: 10.17632/39ndmts5vd
title: Evaluation of the Responsiveness of Investigator Global Assessment Score (KP-IGA) and Composite Area Index (KPAI) for Keratosis Pilaris

description: Background: Keratosis Pilaris (KP) is a benign skin disorder that appears as perifollicular papules on the extensor aspects of the limbs, face, and buttocks. A standardized severity outcome measure is important for the assessment of dermatological conditions. Therefore, the Keratosis Pilaris Investigator Global Assessment (KP-IGA) and its composite area index (KPAI) were developed. 
Objectives: To establish the responsiveness and Minimal Clinically Important Differences (MCIDs) for both KP-IGA and KPAI.
Methodology: This prospective pilot study involves 16 patients enrolled for 3 whole-body treatment sessions at 4-weekly intervals using the Cutera excelV 1064nm Nd: YAG laser. The laser parameters are as follows: spot size of 13mm, pulse duration of 30ms, temperature at 15°C and fluences fixed at 34.0 J/cm2. Prior to each laser treatment, patients were evaluated by the same 2 assessors using the KP-IGA, KPAI, Physician Global Assessment (PGA), and a Likert Scale of the magnitude of change. The patients then attend a 4th visit for the final scoring session. The data collected was used to determine the responsiveness of the KP-IGA and KPAI. To allow a better understanding of the severity and subjective impact of the condition, the patients also completed the Dermatology Quality of Life (DLQI) questionnaire during each visit.
Results: KPAI was shown to be more responsive than KP-IGA to changes in KP skin conditions, achieving a higher correlation with PGA than KP-IGA (R2 = 0.725; R2 = 0.681). The MCID scores for KP-IGA and KPA are 1 and 5, respectively. KPAI disease severity cut-offs for moderate and mild are 10 and 34.
Conclusion: To complete the validation for this first KP-specific scoring system, this study has demonstrated the remarkable responsiveness of both KP-IGA and KPAI. Therefore, this scoring tool is proven to be readily applicable for clinical trials of new treatments for KP.

*The licenses of KP-IGA and KPAI are owned by the Autoimmune Blistering Disease Foundation (ABDF).
DOI: 10.17632/3h45xcv9p7
title: LC-MS data for the article YJASC-S-24-00177

description: Here you can find the original LC-MS data for the article YJASC-S-24-00177, which shows the analytical results of the yellow organic colorants on the painted artwork along the silk road during the Tang Dynasty