cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3720535_d6
title: Additional file 6 of Using simulated fluorescence cell micrographs for the evaluation of cell image segmentation algorithms

description: The zip archive contains simulated images showing B cell nuclei and cytoskeleton with corresponding ground truth. (ZIP 119808 kb)
DOI: 10.6084/m9.figshare.c.3720535_d7
title: Additional file 7 of Using simulated fluorescence cell micrographs for the evaluation of cell image segmentation algorithms

description: The zip archive contains simulated images showing macrophages with corresponding ground truth. (ZIP 55091 kb)
DOI: 10.6084/m9.figshare.c.3720535_d8.v1
title: Additional file 8 of Using simulated fluorescence cell micrographs for the evaluation of cell image segmentation algorithms

description: The zip archive contains all files simulated with SimuCell. These images have been used during the expert observer study. (ZIP 7618.56 kb)
DOI: 10.6084/m9.figshare.c.3720535_d8
title: Additional file 8 of Using simulated fluorescence cell micrographs for the evaluation of cell image segmentation algorithms

description: The zip archive contains all files simulated with SimuCell. These images have been used during the expert observer study. (ZIP 7618.56 kb)
DOI: 10.6084/m9.figshare.c.3721483_d2
title: Additional file 2: Table S2. of Subgingival microbiota dysbiosis in systemic lupus erythematosus: association with periodontal status

description: OTU table. (TXT 278 kb)
DOI: 10.6084/m9.figshare.c.3721465_d4
title: Additional file 13: Table S6. of Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae)

description: Significantly enriched Gene Ontology terms for sequences in the “Shared Achimenes” clusters after orthogroup classification. Terms are enriched if they have FDR-corrected p-values &lt; 0.05 (Fisher’s Exact Test). Those terms that are overrepresented when all species are analyzed together (“Combined” column) are in bold. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3721492_d1.v1
title: MOESM1 of Acute hyperventilation increases the central venous-to-arterial PCO2 difference in stable septic shock patients

description: Additional file 1. Manuscript data set.
DOI: 10.6084/m9.figshare.c.3721465_d5.v1
title: Additional file 14: Table S7. of Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae)

description: Significantly enriched Gene Ontology terms for sequences that were unassigned during orthogroup classification. Terms are enriched if they have FDR-corrected p-values &lt; 0.05 (Fisherâ  s Exact Test). (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3721492_d1
title: MOESM1 of Acute hyperventilation increases the central venous-to-arterial PCO2 difference in stable septic shock patients

description: Additional file 1. Manuscript data set.
DOI: 10.6084/m9.figshare.c.3721465_d5
title: Additional file 14: Table S7. of Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae)

description: Significantly enriched Gene Ontology terms for sequences that were unassigned during orthogroup classification. Terms are enriched if they have FDR-corrected p-values &lt; 0.05 (Fisherâ  s Exact Test). (XLSX 38 kb)
DOI: 10.15468/dl.q3pgew
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Careproctus ovigerus (Gilbert, 1896)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038389-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3721498_d2.v1
title: MOESM2 of Well-positioned nucleosomes punctuate polycistronic pol II transcription units and flank silent VSG gene arrays in Trypanosoma brucei

description: Additional file 2: Table S3. Genomic positions of equivalent sequences mapped as ORC1 sites in T. brucei strain 927 in T. brucei strain 427.
DOI: 10.15468/dl.4efmhw
title: Occurrence Download

description: A dataset containing 628 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bombus eximius Smith, 1852"
 ]
}

 The dataset includes 628 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038390-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3721465_d11.v1
title: Additional file 1: Table S1. of Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae)

description: Detailed sequencing and assembly statistics. A. Trinity assembly. B. Velvet and Oases assemblies. C. EvidentialGene merged assembly. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3721465_d11
title: Additional file 1: Table S1. of Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae)

description: Detailed sequencing and assembly statistics. A. Trinity assembly. B. Velvet and Oases assemblies. C. EvidentialGene merged assembly. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3721465_d12.v1
title: Additional file 20: Table S11. of Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae)

description: Annotated proteins with sites under selection using PAML for M1a vs. M2a comparison. A. Achimenes cettoana. B. Achimenes erecta. C. Achimenes misera. D. Achimenes patens. E. Erythranthe lewisii. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.c.3721465_d12
title: Additional file 20: Table S11. of Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae)

description: Annotated proteins with sites under selection using PAML for M1a vs. M2a comparison. A. Achimenes cettoana. B. Achimenes erecta. C. Achimenes misera. D. Achimenes patens. E. Erythranthe lewisii. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.c.3721465_d14.v1
title: Additional file 2: Table S2. of Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae)

description: Number of contigs detected as rRNAs and tRNAs in each transcriptome. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3721465_d21.v1
title: Additional file 9: Table S4. of Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae)

description: Homologs of flower development genes identified in Achimenes. Included are the expression domain, primary role, and gene family. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.c.3721465_d21
title: Additional file 9: Table S4. of Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae)

description: Homologs of flower development genes identified in Achimenes. Included are the expression domain, primary role, and gene family. (XLSX 60 kb)
DOI: 10.15468/dl.vn4cwu
title: Occurrence Download

description: A dataset containing 255 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Careproctus reinhardti (Krøyer, 1862)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 255 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038391-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3721591_d1.v1
title: Additional file 1: of Association between VĚ O2max, handgrip strength, and musculoskeletal pain among construction and health care workers

description: All data Norwegian Moberg Veiersted. (XLSX 198 kb)
DOI: 10.6084/m9.figshare.c.3721585_d4.v1
title: Additional file 13: of 
                     Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana

description: Data analyzed in Additional files. Spreadsheets showing the data analyzed in Additional files 11, 16 and 20. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3721591_d1
title: Additional file 1: of Association between VĚ O2max, handgrip strength, and musculoskeletal pain among construction and health care workers

description: All data Norwegian Moberg Veiersted. (XLSX 198 kb)
DOI: 10.6084/m9.figshare.c.3721576_d3.v1
title: MOESM3 of Nonpher: computational method for design of hard-to-synthesize structures

description: Additional file 3. Test set. It contains SMILES of 40 structures considered as hard-to-synthesize by medicinal chemists and 120 easy-to-synthesize structures.
DOI: 10.6084/m9.figshare.c.3721576_d3
title: MOESM3 of Nonpher: computational method for design of hard-to-synthesize structures

description: Additional file 3. Test set. It contains SMILES of 40 structures considered as hard-to-synthesize by medicinal chemists and 120 easy-to-synthesize structures.
DOI: 10.6084/m9.figshare.c.3721585_d4
title: Additional file 13: of 
                     Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana

description: Data analyzed in Additional files. Spreadsheets showing the data analyzed in Additional files 11, 16 and 20. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3721576_d4.v1
title: MOESM4 of Nonpher: computational method for design of hard-to-synthesize structures

description: Additional file 4. SAscore training set. It contains SMILES of 54,750 structures considered to be hard-to-synthesize by the SAscore criterion (i.e., with SAscore higher than 6) and the same amount of easy-to-synthesize structures.
DOI: 10.6084/m9.figshare.c.3721576_d4
title: MOESM4 of Nonpher: computational method for design of hard-to-synthesize structures

description: Additional file 4. SAscore training set. It contains SMILES of 54,750 structures considered to be hard-to-synthesize by the SAscore criterion (i.e., with SAscore higher than 6) and the same amount of easy-to-synthesize structures.
DOI: 10.6084/m9.figshare.c.3721603_d4.v1
title: Additional file 13: Table S7. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

description: Comparison of xa5 GWAS SNPs with SNPs derived from 3k Genomes. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.c.3721603_d4
title: Additional file 13: Table S7. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

description: Comparison of xa5 GWAS SNPs with SNPs derived from 3k Genomes. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.c.3721603_d5.v1
title: Additional file 1: Table S1. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

description: Information on the 285 diverse genotypes used in this study. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3721585_d10.v1
title: Additional file 19: of 
                     Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana

description: Data analyzed in Fig.Â 7. Spreadsheets showing the data analyzed in Fig.Â 7aâ  c. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3721585_d10
title: Additional file 19: of 
                     Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana

description: Data analyzed in Fig.Â 7. Spreadsheets showing the data analyzed in Fig.Â 7aâ  c. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3721603_d5
title: Additional file 1: Table S1. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

description: Information on the 285 diverse genotypes used in this study. (XLSX 34 kb)
DOI: 10.15468/dl.yxd3yc
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caristius macropus (Bellotti, 1903)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038392-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3721585_d17.v1
title: Additional file 25: of 
                     Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana

description: Data analyzed in Fig.Â 9. Spreadsheets showing the data analyzed in Fig.Â 9c and j. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3721585_d16
title: Additional file 24: of 
                     Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana

description: Data analyzed in Fig.Â 8. Spreadsheets showing the data analyzed in Fig.Â 8b. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3721585_d17
title: Additional file 25: of 
                     Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana

description: Data analyzed in Fig.Â 9. Spreadsheets showing the data analyzed in Fig.Â 9c and j. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3721585_d18.v1
title: Additional file 2: of 
                     Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana

description: Arabidopsis genes differently regulated in expression profiling through randomly sheared cDNA tag sequencing (EXPRSS) data. Lists of the Arabidopsis genes that were differentially expressed in AlNc2 and AlNc14 infected tissue over a time course. (XLSX 1019 kb)
DOI: 10.6084/m9.figshare.c.3721585_d18
title: Additional file 2: of 
                     Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana

description: Arabidopsis genes differently regulated in expression profiling through randomly sheared cDNA tag sequencing (EXPRSS) data. Lists of the Arabidopsis genes that were differentially expressed in AlNc2 and AlNc14 infected tissue over a time course. (XLSX 1019 kb)
DOI: 10.6084/m9.figshare.c.3721585_d19.v1
title: Additional file 3: of 
                     Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana

description: Differentially regulated genes at each time point and overlap between genes regulated by each pathogen. Comparisons of the Arabidopsis genes differentially expressed during infection with AlNc2 and/or AlNc14 over a time course. (XLSX 104 kb)
DOI: 10.6084/m9.figshare.c.3721585_d19
title: Additional file 3: of 
                     Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana

description: Differentially regulated genes at each time point and overlap between genes regulated by each pathogen. Comparisons of the Arabidopsis genes differentially expressed during infection with AlNc2 and/or AlNc14 over a time course. (XLSX 104 kb)
DOI: 10.6084/m9.figshare.c.3721585_d24.v1
title: Additional file 8: of 
                     Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana

description: Gene ontology (GO) terms within biological processes that are significantly enriched amongst genes down-regulated in the expression profiling. Results of the GO enrichment analysis for down-regulated genes. (XLSX 157 kb)
DOI: 10.6084/m9.figshare.c.3721585_d24
title: Additional file 8: of 
                     Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana

description: Gene ontology (GO) terms within biological processes that are significantly enriched amongst genes down-regulated in the expression profiling. Results of the GO enrichment analysis for down-regulated genes. (XLSX 157 kb)
DOI: 10.15468/dl.ytdw72
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cataetyx alleni (Byrne, 1906)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038393-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3721672_d2.v1
title: Additional file 2: Table S2. of EnCOUNTer: a parsing tool to uncover the mature N-terminus of organelle-targeted proteins in complex samples

description: Results obtained after EnCOUNTer processing applied to a large A. thaliana LC-MS/MS dataset (XLSX 381Â kb)
DOI: 10.6084/m9.figshare.c.3721654_d6.v1
title: Additional file 5: of Quorum sensing of Streptococcus mutans is activated by Aggregatibacter actinomycetemcomitans and by the periodontal microbiome

description: Sheet 1: Overview of biofilm sequencing results. Sheet 2: Small RNAs expressed by S. mutans in dual-species biofilms with A.act. Sheet 2: Top 20 genes of S. mutans expressed in dual-species biofilms with A. act.. Sheet 3: Top 20 genes of A. act. expressed in dual-species biofilms with S. mutans. Sheet 4: Top 50 most abundant transcripts of S. mutans in the periodontal community (sample AU_08, AU_09, AU_12, AU_19). Sheet 5: Relative abundace of transcripts of the SigX regulon of S. mutans in the periodontal community (sample AU_8, AU_9, AU_12, AU_19). Sheet 6: Differentially expressed genes of the SigX regulon of S. mutans (periodontal pocket versus pure culture at 8 h). Sheet 7: Relative abundance (%) of transcripts of S. mutans in four periodontal pocket samples (sample AU_08, AU_09, AU_12, AU_19) Sheet 8: Relative abundance (%) of A. act. genes expressed in dual-species biofilms. (XLSX 530 kb)
DOI: 10.6084/m9.figshare.c.3721672_d2
title: Additional file 2: Table S2. of EnCOUNTer: a parsing tool to uncover the mature N-terminus of organelle-targeted proteins in complex samples

description: Results obtained after EnCOUNTer processing applied to a large A. thaliana LC-MS/MS dataset (XLSX 381Â kb)
DOI: 10.6084/m9.figshare.c.3721654_d6
title: Additional file 5: of Quorum sensing of Streptococcus mutans is activated by Aggregatibacter actinomycetemcomitans and by the periodontal microbiome

description: Sheet 1: Overview of biofilm sequencing results. Sheet 2: Small RNAs expressed by S. mutans in dual-species biofilms with A.act. Sheet 2: Top 20 genes of S. mutans expressed in dual-species biofilms with A. act.. Sheet 3: Top 20 genes of A. act. expressed in dual-species biofilms with S. mutans. Sheet 4: Top 50 most abundant transcripts of S. mutans in the periodontal community (sample AU_08, AU_09, AU_12, AU_19). Sheet 5: Relative abundace of transcripts of the SigX regulon of S. mutans in the periodontal community (sample AU_8, AU_9, AU_12, AU_19). Sheet 6: Differentially expressed genes of the SigX regulon of S. mutans (periodontal pocket versus pure culture at 8 h). Sheet 7: Relative abundance (%) of transcripts of S. mutans in four periodontal pocket samples (sample AU_08, AU_09, AU_12, AU_19) Sheet 8: Relative abundance (%) of A. act. genes expressed in dual-species biofilms. (XLSX 530 kb)
DOI: 10.6084/m9.figshare.c.3714217_d3.v1
title: Additional file 3: of Legal immigrants: invasion of alien microbial communities during winter occurring desert dust storms

description: Supplementary Information - Table S5. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3714217_d2
title: Additional file 2: of Legal immigrants: invasion of alien microbial communities during winter occurring desert dust storms

description: Supplementary Information - Table S2. (XLSX 30Â kb)
DOI: 10.6084/m9.figshare.c.3714217_d3
title: Additional file 3: of Legal immigrants: invasion of alien microbial communities during winter occurring desert dust storms

description: Supplementary Information - Table S5. (XLSX 16Â kb)
DOI: 10.15468/dl.gzmg5e
title: Occurrence Download

description: A dataset containing 233 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cataetyx rubrirostris Gilbert, 1890",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 233 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038394-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3721705_d3.v1
title: Additional file 12 of Preservation affinity in consensus modules among stages of HIV-1 progression

description: List of genes preserved in consensus modules of each category. (XLSX 11.5 kb)
DOI: 10.6084/m9.figshare.c.3721705_d3
title: Additional file 12 of Preservation affinity in consensus modules among stages of HIV-1 progression

description: List of genes preserved in consensus modules of each category. (XLSX 11.5 kb)
DOI: 10.6084/m9.figshare.c.3721705_d4.v1
title: Additional file 13 of Preservation affinity in consensus modules among stages of HIV-1 progression

description: List of immune regulatory genes preserved in consensus modules in each category. (XLSX 9.80 kb)
DOI: 10.6084/m9.figshare.c.3721705_d4
title: Additional file 13 of Preservation affinity in consensus modules among stages of HIV-1 progression

description: List of immune regulatory genes preserved in consensus modules in each category. (XLSX 9.80 kb)
DOI: 10.6084/m9.figshare.c.3721705_d5.v1
title: Additional file 14 of Preservation affinity in consensus modules among stages of HIV-1 progression

description: List of exclusive immune regulatory genes expressed in stages of HIVâ  1 infection. (XLSX 12.1 kb)
DOI: 10.6084/m9.figshare.c.3721705_d5
title: Additional file 14 of Preservation affinity in consensus modules among stages of HIV-1 progression

description: List of exclusive immune regulatory genes expressed in stages of HIVâ  1 infection. (XLSX 12.1 kb)
DOI: 10.6084/m9.figshare.c.3721705_d6.v1
title: Additional file 15 of Preservation affinity in consensus modules among stages of HIV-1 progression

description: List of the genes involved in the non–preserved category–1 meta-modules: “green” and “blue”. (XLSX 22.7 kb)