cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26985522.v1
title: Efficacy and safety of eravacycline (ERV) in treating infections caused by Gram-negative pathogens: a systematic review and meta-analysis

description: Eravacycline (ERV) is a novel synthetic fluorocycline antibiotic with broad-spectrum antibacterial efficacy against pathogens. This study sought to investigate ERV’s effectiveness and safety in treating Gram-negative pathogens (GNPs) infections. We conducted a comprehensive search of PubMed, Cochrane Library, Embase, Web of Science, and ClinicalTrials.gov up to September 2023. Included in the review were studies assessing the efficacy or safety of ERV in treating GNP infections. Three randomized controlled trials, seven cohort studies, and two case reports were included. There was no statistically significant difference between ERV and comparators in clinical cure (OR = 0.84, 95% CI = 0.59–1.19), microbiologic eradication (OR = 0.69, 95% CI = 0.36–1.33), and mortality (OR = 1.66, 95% CI = 0.81–3.41). However, a significantly higher rate of adverse events with ERV was observed compared to the control group (OR = 1.55, 95% CI = 1.21–1.99). Additionally, cohort studies reported a clinical cure rate of 73.2% (88.8% in RCTs), an AE rate of 4.5% (38.3% in RCTs), and mortality of 16.2% (1.5% in RCTs). Patients in RCTs received ERV monotherapy, whereas almost half of the patients in cohort studies were treated with ERV in combination with other antibiotics. Further studies are warranted to investigate the safety and efficacy of ERV monotherapy or combination therapy in critically ill patients.
DOI: 10.6084/m9.figshare.26042022
title: Impact of the COVID-19 pandemic on the utilisation and quality of antibiotic use in the Scottish primary care setting: a population-based segmented interrupted time-series analysis

description: Inappropriate use of antibiotics is expected to increase during the COVID-19 pandemic, but there are limited data on COVID-19’s long-term impact. We assessed the impact of COVID-19 on the quantity and quality of antibiotic use in Scotland. A segmented interrupted time series was applied to monthly dispensed antibiotics using prescription cost analysis data from March/2019 to March/2023. Antibiotic use was quantified using the number of items dispensed/1000 inhabitants (TIDs) and defined daily dose/1000 inhabitants/day (DIDs). The quality of antibiotic use was assessed using key quality indicators including the WHO AWaRe classification, proportion of broad-spectrum and ”4C”-antibiotics. Overall, for all antibiotics, there was a non-significant increase in TIDs and DIDs before the first lockdown (March/2020) (β<sub>1</sub>), but a decline in the level immediately after the first (β<sub>2</sub>) and second lockdowns (β<sub>4</sub>) (November/2020), albeit non-significant. However, a significant increase in the time trend after the second lockdown (β<sub>5</sub>) for all antibiotic classes was observed. COVID-19 had no negative impact on AWaRe utilisation, with the proportion of all antibiotics from the Access group increasing from 76% in March/2019 to 90% in March/2023. The proportion of ”4C” antibiotic reduced significantly after the second lockdown. Neither the utilisation nor the quality of total antibiotic use appeared to have been significantly affected by COVID-19.
DOI: 10.6084/m9.figshare.26042022.v1
title: Impact of the COVID-19 pandemic on the utilisation and quality of antibiotic use in the Scottish primary care setting: a population-based segmented interrupted time-series analysis

description: Inappropriate use of antibiotics is expected to increase during the COVID-19 pandemic, but there are limited data on COVID-19’s long-term impact. We assessed the impact of COVID-19 on the quantity and quality of antibiotic use in Scotland. A segmented interrupted time series was applied to monthly dispensed antibiotics using prescription cost analysis data from March/2019 to March/2023. Antibiotic use was quantified using the number of items dispensed/1000 inhabitants (TIDs) and defined daily dose/1000 inhabitants/day (DIDs). The quality of antibiotic use was assessed using key quality indicators including the WHO AWaRe classification, proportion of broad-spectrum and ”4C”-antibiotics. Overall, for all antibiotics, there was a non-significant increase in TIDs and DIDs before the first lockdown (March/2020) (β<sub>1</sub>), but a decline in the level immediately after the first (β<sub>2</sub>) and second lockdowns (β<sub>4</sub>) (November/2020), albeit non-significant. However, a significant increase in the time trend after the second lockdown (β<sub>5</sub>) for all antibiotic classes was observed. COVID-19 had no negative impact on AWaRe utilisation, with the proportion of all antibiotics from the Access group increasing from 76% in March/2019 to 90% in March/2023. The proportion of ”4C” antibiotic reduced significantly after the second lockdown. Neither the utilisation nor the quality of total antibiotic use appeared to have been significantly affected by COVID-19.
DOI: 10.5281/zenodo.13860306
title: Vibroacoustic dataset of DGEN 380 turbofan test bench

description: This dataset focuses on vibration and acoustic signals from a test bench based on the DGEN 380 turbofan, a small engine compared to those typically used in commercial aircraft. It provides a unique opportunity to explore the dynamics of a turbofan engine under different configurations, offering insights into vibroacoustic interactions and the impact of structural elements, such as Outlet Guide Vanes (OGVs), on the engine behavior. The test bench features a planetary gearbox with three planets, where the ring serves as the input, the sun as the output, and the carrier remains fixed. Key characteristic frequencies can be tracked, including the blade passing frequencies (BPF) and shaft-related frequencies for both the low-pressure (LP) and high-pressure (HP) shafts. The instrumentation setup includes three 3-axis accelerometers (A/34-2) positioned along the engine at specific locations, measuring vibration in the x, y, and z axes. The setups also include microphone distributions according to ISO 3746 standards and specific placements around different engine components, such as the rotor and stator. Four measurement configurations were employed, considering both the presence and absence of OGVs. The dataset includes acoustic and vibration signals for each configuration across different operational regimes, including idle, intermediate speeds, and full throttle. This controlled test environment allows for detailed analysis of the interaction between vibration and acoustic phenomena, providing insights that are valuable for diagnosing and improving turbofan engine performance.
DOI: 10.5281/zenodo.13860307
title: Vibroacoustic dataset of DGEN 380 turbofan test bench

description: This dataset focuses on vibration and acoustic signals from a test bench based on the DGEN 380 turbofan, a small engine compared to those typically used in commercial aircraft. It provides a unique opportunity to explore the dynamics of a turbofan engine under different configurations, offering insights into vibroacoustic interactions and the impact of structural elements, such as Outlet Guide Vanes (OGVs), on the engine behavior. The test bench features a planetary gearbox with three planets, where the ring serves as the input, the sun as the output, and the carrier remains fixed. Key characteristic frequencies can be tracked, including the blade passing frequencies (BPF) and shaft-related frequencies for both the low-pressure (LP) and high-pressure (HP) shafts. The instrumentation setup includes three 3-axis accelerometers (A/34-2) positioned along the engine at specific locations, measuring vibration in the x, y, and z axes. The setups also include microphone distributions according to ISO 3746 standards and specific placements around different engine components, such as the rotor and stator. Four measurement configurations were employed, considering both the presence and absence of OGVs. The dataset includes acoustic and vibration signals for each configuration across different operational regimes, including idle, intermediate speeds, and full throttle. This controlled test environment allows for detailed analysis of the interaction between vibration and acoustic phenomena, providing insights that are valuable for diagnosing and improving turbofan engine performance.
DOI: 10.60656/df03e16cacbb4bc0
title: Custom collection of Doppler lidar wind data from Palaiseau on 14 Jul 2022
DOI: 10.6084/m9.figshare.24961478
title: Habitat use by the endangered and endemic Tutema (<i>Porphyriops melanops bogotensis</i> Chapman, 1914) in Colombia

description: Habitat use by the endangered and endemic Tutema (<i>Porphyriops melanops bogotensis</i> Chapman, 1914) in Colombia
DOI: 10.6084/m9.figshare.24961478.v1
title: Habitat use by the endangered and endemic Tutema (<i>Porphyriops melanops bogotensis</i> Chapman, 1914) in Colombia

description: Habitat use by the endangered and endemic Tutema (<i>Porphyriops melanops bogotensis</i> Chapman, 1914) in Colombia
DOI: 10.15468/dl.qdsyyv
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Achillea virescens (Fenzl) Heimerl, Achillea mollis var. virescens Fenzl)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 40 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004204-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m977w2
title: Occurrence Download

description: A dataset containing 355 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Acer longipes Franch."
 ]
}

 The dataset includes 355 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004206-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mw9b4v
title: Occurrence Download

description: A dataset containing 157 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acer lucidum F.P.Metcalf"
 ]
}

 The dataset includes 157 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004207-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/10038765
title: e-IPO Indonesia Data - Investment
DOI: 10.15468/dl.are9ed
title: Occurrence Download

description: A dataset containing 18937 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Records of the European pond turtle Emys orbicularis on the DE-FR cross-bordering Neu-Woerr site (Lauterbourg and Neuburg-am-Rhein) by the Emys-R and SEE-Life Neu-Woerr projects, Données herpétologiques SINP pour la région Occitanie-Données opportunistes amphibiens reptiles issues de structures publiques, Observation.org, Nature data from around the World, Dreal Occitanie- Base Biodiv SINP - Données faune pour le rapportage européen DHFF-DO 2018, 2021_LPO PACA_7, Caldesia : base de données naturaliste du Parc naturel régional de la Brenne - PNR Brenne - Données Caldesia au 15/12/2019., Données issues du portail Sigogne - Bourgogne-Franche-Comté - Données du programme OFAB - Société d'Histoire Naturelle d'Autun, Banco de Datos de la Biodiversidad de la Comunitat Valenciana, Base de données faune - DREAL Centre-Val de Loire. Points / polylignes)",
 "TaxonKey is Emys orbicularis (Linnaeus, 1758)"
 ]
}

 The dataset includes 18937 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004209-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vazgmt
title: Occurrence Download

description: A dataset containing 1637 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((9.07629 42.16084,16.11055 42.16084,16.11055 44.97334,9.07629 44.97334,9.07629 42.16084))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Fagus sylvatica L.",
 "Year 2021-2024"
 ]
}

 The dataset includes 1637 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004210-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nhcz3y
title: Occurrence Download

description: A dataset containing 1005 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ajuga orientalis L., Ajuga orientalis var. oblongifolia K.Koch, Ajuga orientalis var. orthosiphon K.Koch, Ajuga orientalis var. aenesia Heldr., Ajuga orientalis var. condensata Boiss., Bugula obliqua Moench, Ajuga orientalis subsp. aenesia (Heldr.) Pithos & Damboldt, Bulga orientalis (L.) Kuntze, Bugula orientalis (L.) Mill.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 1005 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004211-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14234974
title: Luminal STIM1 Mutants that Cause Tubular Aggregate Myopathy Promote Autophagic Processes
DOI: 10.5281/zenodo.14234973
title: Luminal STIM1 Mutants that Cause Tubular Aggregate Myopathy Promote Autophagic Processes
DOI: 10.6084/m9.figshare.27922125
title: EON Data and Analysis for submission 2024.xlsx

description: Data collected from questionnaires at the Education & Outreach Symposium at the Microbiology Society Annual Conference 2024 as well as data on region of speakers
DOI: 10.6084/m9.figshare.27922125.v1
title: EON Data and Analysis for submission 2024.xlsx

description: Data collected from questionnaires at the Education & Outreach Symposium at the Microbiology Society Annual Conference 2024 as well as data on region of speakers
DOI: 10.5281/zenodo.14235045
title: nf-core/marsseq: systematic pre-processing pipeline for MARS-seq experiments

description: Datasets used for analysis using https://github.com/nf-core/marsseq. Code is available at https://github.com/brickmanlab/proks-et-al-2023.
DOI: 10.5281/zenodo.8016373
title: nf-core/marsseq: systematic pre-processing pipeline for MARS-seq experiments

description: Datasets used for analysis using https://github.com/nf-core/marsseq. Code is available at https://github.com/brickmanlab/proks-et-al-2023.
DOI: 10.5281/zenodo.8016374
title: nf-core/marsseq: systematic pre-processing pipeline for MARS-seq experiments

description: Datasets used for analysis using https://github.com/nf-core/marsseq. Code is available at https://github.com/brickmanlab/proks-et-al-2023.
DOI: 10.15468/dl.atw637
title: Occurrence Download

description: A dataset containing 243 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Passiflora rovirosae Killip"
 ]
}

 The dataset includes 243 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004212-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27925062
title: Supplementary Material for: Focus on the Blind Spot of Stone Disease: Analysis of Lower Urinary Tract Stone Interventions from 2006 to 2020 using German nationwide inpatient data.

description: Introduction
To analyze contemporary treatment trends in bladder stone management in Germany over a 15-year period.
Methods
We analyzed data from the nationwide German hospital billing database from 2006 to 2020. The significance of changes over time was evaluated via linear regression analysis. 
Results
Total case numbers of therapeutic interventions for lower urinary tract calculi increased from 6,770 in 2006 to 9,037 in 2020 (p&lt;0.001). Transurethral cystolithotripsy (TUCL) was the predominant procedure with increasing case numbers from 5,552 in 2006 to 7,699 in 2020 (p&lt;0.001). Also, the share of TUCL increased by 4 % during the study period. TUCL with laser fragmentation was coded in 82 cases in 2006 and in 1,527 cases in 2020 (p&lt;0.001). Case numbers of percutaneous cystolithotripsy (PCCL) also increased over time from 406 to 430 cases (p=0.005), but the share decreased by 20 %. Inpatient shock wave lithotripsy (SWL) is very rarely performed for bladder calculi with an average of 22 cases per year in all hospitals in Germany. Case numbers of open cystolithotomy (OCL) also increased from 614 cases in 2006 to 692 cases in 2020 (p=0.006), but the share decreased by 15.5 %. On average 164 cases of stone removal from neobladders per year were performed, mainly transurethrally (47 %) or via an open approach (21 %). Case numbers of TUCL combined with transurethral resection of the prostate (TUR-P) declined from 1,712 in 2006 to 1,450 in 2020 (p=0.014). However, this might be attributed to the concomitant rise of laser enucleation of the prostate with steadily increasing case numbers in Germany.
Conclusion
We present contemporary population-based data on bladder stone treatment in Germany. TUCL is the predominant therapeutic modality with increasing case numbers, but open cystolithotomy is still performed frequently. TUR-P is the procedure that is most often combined with TUCL.
DOI: 10.6084/m9.figshare.27925062.v1
title: Supplementary Material for: Focus on the Blind Spot of Stone Disease: Analysis of Lower Urinary Tract Stone Interventions from 2006 to 2020 using German nationwide inpatient data.

description: Introduction
To analyze contemporary treatment trends in bladder stone management in Germany over a 15-year period.
Methods
We analyzed data from the nationwide German hospital billing database from 2006 to 2020. The significance of changes over time was evaluated via linear regression analysis. 
Results
Total case numbers of therapeutic interventions for lower urinary tract calculi increased from 6,770 in 2006 to 9,037 in 2020 (p&lt;0.001). Transurethral cystolithotripsy (TUCL) was the predominant procedure with increasing case numbers from 5,552 in 2006 to 7,699 in 2020 (p&lt;0.001). Also, the share of TUCL increased by 4 % during the study period. TUCL with laser fragmentation was coded in 82 cases in 2006 and in 1,527 cases in 2020 (p&lt;0.001). Case numbers of percutaneous cystolithotripsy (PCCL) also increased over time from 406 to 430 cases (p=0.005), but the share decreased by 20 %. Inpatient shock wave lithotripsy (SWL) is very rarely performed for bladder calculi with an average of 22 cases per year in all hospitals in Germany. Case numbers of open cystolithotomy (OCL) also increased from 614 cases in 2006 to 692 cases in 2020 (p=0.006), but the share decreased by 15.5 %. On average 164 cases of stone removal from neobladders per year were performed, mainly transurethrally (47 %) or via an open approach (21 %). Case numbers of TUCL combined with transurethral resection of the prostate (TUR-P) declined from 1,712 in 2006 to 1,450 in 2020 (p=0.014). However, this might be attributed to the concomitant rise of laser enucleation of the prostate with steadily increasing case numbers in Germany.
Conclusion
We present contemporary population-based data on bladder stone treatment in Germany. TUCL is the predominant therapeutic modality with increasing case numbers, but open cystolithotomy is still performed frequently. TUR-P is the procedure that is most often combined with TUCL.
DOI: 10.15468/dl.zhj7g9
title: Occurrence Download

description: A dataset containing 2989 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Passiflora capsularis L."
 ]
}

 The dataset includes 2989 records from 188 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004213-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.unh69g
title: Occurrence Download

description: A dataset containing 2461 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is University of Florida Invertebrate Paleontology",
 "TaxonKey is Clypeasteroida"
 ]
}

 The dataset includes 2461 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004214-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5522/04/25913125
title: Modelling Photodissociation: Quantum Dynamics Simulations of Methanol

description: Data supporting the calculations in the paper. These include the input and output and database files for the Quantics program to run DD-vMCG simulations of the photodissociation of methanol, as well as the input and output files for MCTDH simulations of the absorption spectrum. These files can be used together with Quantics to generate the data in the paper Cigrang and Worth (J. Phys. Chem. A, 128: 7546–7557, 2024). The data files are standard ascii files, grouped into directories for the different models and approximations studied. The databases with the points calculated during the direct dynamics simulations are SQLite format with tables for geometries, energies, gradients etc. More details are in the paper. The Quantics program is a mostly Fortran code for running quantum dynamics simulations. It is open source and runs on linux workstations. It is freely available on request to the authors of the paper. For further details of the program see Comp. Phys. Comm., 248:107040–15, 2020.
DOI: 10.5522/04/25913125.v1
title: Modelling Photodissociation: Quantum Dynamics Simulations of Methanol

description: Data supporting the calculations in the paper. These include the input and output and database files for the Quantics program to run DD-vMCG simulations of the photodissociation of methanol, as well as the input and output files for MCTDH simulations of the absorption spectrum. These files can be used together with Quantics to generate the data in the paper Cigrang and Worth (J. Phys. Chem. A, 128: 7546–7557, 2024). The data files are standard ascii files, grouped into directories for the different models and approximations studied. The databases with the points calculated during the direct dynamics simulations are SQLite format with tables for geometries, energies, gradients etc. More details are in the paper. The Quantics program is a mostly Fortran code for running quantum dynamics simulations. It is open source and runs on linux workstations. It is freely available on request to the authors of the paper. For further details of the program see Comp. Phys. Comm., 248:107040–15, 2020.
DOI: 10.15468/dl.fpx82g
title: Occurrence Download

description: A dataset listing the 928 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is Italy",
 "GadmGid is ITA.6.3.9_1",
 "GbifRegion is Europe and Central Asia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 928 records were derived from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004208-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.