cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21921915
title: Supplementary Material for: Peripheral Eosinophil Count Associated with Disease Activity and Clinical Outcomes in Hospitalized Patients with Lupus Nephritis

description: <b><i>Introduction:</i></b> The aim of this study was to evaluate the association of peripheral eosinophil (EOS) count with disease activity and kidney outcomes in lupus nephritis (LN) patients. <b><i>Methods:</i></b> A total of 453 hospitalized and biopsy-proven LN patients at our hospital from 2006 to 2013 were enrolled, of which 388 patients had repeated measurements of EOS. Relationships were explored between average EOS and disease activity at baseline, using the systemic lupus erythematosus disease activity (SLEDAI) and activity index (AI) on kidney biopsy. Follow-up data were available through December 2016. The primary outcome measure was a composite of doubling of serum creatinine and end-stage kidney disease after a median follow-up of 51 months. <b><i>Results:</i></b> The mean age of the enrolled 388 LN patients was 33.1 ± 10.8 years old, and 335 (86%) were female. The median average peripheral EOS count was 0.033 (0.015–0.057) ×10<sup>9</sup>/L. Mean AI and SLEDAI score were 6.8 ± 2.5 and 14.9 ± 5.4, respectively. Logistic regression models showed that decreased average EOS was independently associated with higher AI (≥6) and higher SLEDAI (≥15) (odds ratio [OR] 0.93, 95% confidence interval [CI] 0.90–0.97; and OR 0.96, 95% CI: 0.93–0.99, respectively). There was a parabolic relationship between average EOS and the primary outcome, with hazard ratio (HR) &gt; 1 for both levels ≤0.033 and &gt;0.16 × 10<sup>9</sup>/L. <b><i>Conclusion:</i></b> Lower EOS count was independently associated with severe disease activity and kidney progression in LN.
DOI: 10.5281/zenodo.1421616
title: The Open D1Namo Dataset: A Multi-Modal Dataset For Research On Non-Invasive Type 1 Diabetes Management

description: The description of the dataset is available at https://doi.org/10.1016/j.imu.2018.09.003
DOI: 10.5281/zenodo.3958283
title: Gridded fossil CO2 emissions and related O2 combustion consistent with national inventories 1959-2018

description: GCP-GridFED (version 2019.1) is a gridded fossil emissions dataset that is consistent with the national CO<sub>2</sub> emissions reported by the Global Carbon Project (GCP). GCP-GridFEDv2019.1 provides monthly fossil CO<sub>2 </sub>emissions for the period 1959-2018 at a spatial resolution of 0.1° × 0.1°. The gridded emissions estimates are provided separately for fossil CO<sub>2</sub> emitted by the oxidation of oil, coal and natural gas, with mixed international bunker fuels considered separately, as well as for the calcination of limestone during cement production. GCP-GridFED also includes gridded uncertainties in CO<sub>2 </sub>emission, incorporating differences in uncertainty across emissions sectors and countries, and gridded estimates of corresponding O<sub>2</sub> uptake based on oxidative ratios for oil, coal and natural gas. GCP-GridFED was produced by scaling monthly gridded emissions for the year 2010, from the Emissions Database for Global Atmospheric Research (EDGAR; version 4.3.2; Janssens-Maenhout et al., 2019), to the national annual emissions estimates compiled as part of the 2019 global carbon budget (GCB-NAE) for the years 1959-2018 (Friedlingstein et al., 2019). The data description article is under review.
description: {"references": ["Friedlingstein, P., Jones, M. W., O'Sullivan, M. et al. (2019) Global Carbon Budget 2019. Earth Syst. Sci. Data 11, 1783\u20131838, doi:10.5194/essd-11-1783-2019", "Janssens-Maenhout, G., Crippa, M., Guizzardi, D. et al. (2019) EDGAR v4.3.2 Global Atlas of the three major greenhouse gas emissions for the period 1970\u20132012. Earth Syst. Sci. Data 11, 959\u20131002, doi:10.5194/essd-11-959-2019"]}
DOI: 10.5517/ccq5lm2
title: CCDC 660784: Experimental Crystal Structure Determination

description: Related Article: Poondra N.J.Turner, S.Parsons|2007|CSD Communication|||
DOI: 10.6073/pasta/02e0c0ef771cc31b75bca053561d8616
title: Seasonal surveys of fish abundance and diversity in streams of central, eastern, and southern Arizona, USA (2016-2019)

description: Fish communities in desert streams are shaped by both the long-term selective pressures of streamflow regimes and the short-term effects of floods and droughts. Between spring 2016 and spring 2019 we conducted seasonal sampling of nine streams across the state of Arizona, USA on a gradient of flow regime variability. We calculated populations size for each species at all surveys to analyze seasonal and long-term variations in fish community composition. We additionally used the data to calculate annual rates of fish biomass production. This data set includes the raw catch data from three pass depletion electrofishing, population size estimates at each season, sampling locations, and the USGS stream gauges we used to obtain streamflow data.
DOI: 10.21227/dx3q-nw04
title: Design and development of a mecanum-built portable perturbation-based balance training device 

description: In this paper, we propose a mecanum-built perturbation-based balance training (M-PBT) device to train a person with a neurological disorder or an elderly person to regain their deteriorated motor adaptive skill to prevent a fall. The following are the features of the device: to challenge the trainees to predict the fall direction, the device (1) generates multi-directional fall options that simulate a slip and trip scenario; (2) is portable to assist in-patients’ rehabilitation; (3) possesses qualities of modified constraint-induced movement therapy (mCIMT). The distance traveled and the peak acceleration attained by the device while under different loads were both evaluated to validate the performance of the device. Both the peak acceleration and the distance traveled by the device were measured using Delsys trigno wireless sensors and Kinovea software, respectively. In this work, the movements of the device were validated through 144 trials in which it was driven in eight distinct directions at various accelerations and loads. Univariate analysis and Tukey’s multiple comparison tests were performed to analyze the three objectives (1) influence of load on distance traveled by the device; (2) influence of load on the peak acceleration generated by the device; and (3) influence of input acceleration on the peak acceleration generated by the device. The study suggested that load affected the distance by approximately 1cm but performed well to achieve the peak acceleration to induce perturbation. As the device used a single-leg perturbation technique, the mCIMT characteristic helps to focus on training the weaker limb.
DOI: 10.21227/069h-z081
title: Design and development of a mecanum-built portable perturbation-based balance training device 

description: In this paper, we propose a mecanum-built perturbation-based balance training (M-PBT) device to train a person with a neurological disorder or an elderly person to regain their deteriorated motor adaptive skill to prevent a fall. The following are the features of the device: to challenge the trainees to predict the fall direction, the device (1) generates multi-directional fall options that simulate a slip and trip scenario; (2) is portable to assist in-patients’ rehabilitation; (3) possesses qualities of modified constraint-induced movement therapy (mCIMT). The distance traveled and the peak acceleration attained by the device while under different loads were both evaluated to validate the performance of the device. Both the peak acceleration and the distance traveled by the device were measured using Delsys trigno wireless sensors and Kinovea software, respectively. In this work, the movements of the device were validated through 144 trials in which it was driven in eight distinct directions at various accelerations and loads. Univariate analysis and Tukey’s multiple comparison tests were performed to analyze the three objectives (1) influence of load on distance traveled by the device; (2) influence of load on the peak acceleration generated by the device; and (3) influence of input acceleration on the peak acceleration generated by the device. The study suggested that load affected the distance by approximately 1cm but performed well to achieve the peak acceleration to induce perturbation. As the device used a single-leg perturbation technique, the mCIMT characteristic helps to focus on training the weaker limb.
DOI: 10.6084/m9.figshare.21922383.v2
title: Deliverables - restricted access

description: This repository contains 18 deliverables from project InvasiBES, funded by the Era-Net BiodivERsA during 2019-2022.
DOI: 10.17632/br7md54ybf.1
title: Burnout among Dutch GPs, work ability and absenteeism

description: Hypothesis 1:  Emotional exhaustion is positively related to absenteeism duration and to a lesser extent to absenteeism frequency; Hypothesis 2: Depersonalization is positively related to absenteeism frequency and to a lesser extent to absenteeism duration; Hypothesis 3: Emotional exhaustion is negatively related to work ability; Hypothesis 4: Depersonalization is negatively related to work ability; Hypothesis 5; Absenteeism duration is negatively related to work ability; Hypothesis 6: Absenteeism frequency is negatively related to work ability; Hypothesis 7; Work ability mediates the relationship between emotional exhaustion and absenteeism duration and to a lesser extent the relationship between emotional exhaustion and absenteeism frequency; Hypothesis 8: Work ability mediates the relationship between depersonalization and absenteeism frequency and to a lesser extent the relationship between depersonalization and absenteeism duration. The dataset includes raw data obtained from questionnaires , before single imputation with EM algorithm in SPSS to deal with missing values . The  questionnaires, invitation letters,raw dataset (see"My files"below), imputed dataset (see"My files"below), codebook, description of variables, rocedures CFA, procedures common method bias, mediation analyses, syntax code Amos, are all incluyded in the user_manual_data_management file.
DOI: 10.34740/kaggle/dsv/4875576
title: Aviation Accident Database & Synopses, up to 2023
DOI: 10.5281/zenodo.7553744
title: Dataset: Stunting and Its Association with Education and Cognitive Outcomes in Adulthood: A Longitudinal Study in Indonesia

description: Abstract Stunting is associated with adverse outcomes in adulthood. This article specifically aims to analyse the relationship between childhood stunting and education as well as cognitive outcomes for adults in Indonesia. Pooled data from two waves of the Indonesia Family Life Survey in 1993 and 1997, identified 4851 children aged 0-5 by their stunting status as well as their relative height to be compared for their differences in educational outcomes and cognitive abilities in 2014. Height-for-age z-score was used to proxy relative height and determine stunting status based on 2006 WHO child’s growth standards. The outcomes for education and cognitive abilities include educational levels, years of schooling, age of school entry, failing a grade, and scores for cognitive tests. The study employs estimation models of pooled regressions and instrumental variables. Stunting and relatively small stature had a significant association with cognitive development, and they worked as an intermediary to cognitive developmental barriers manifested in reduced educational outcomes. A lack of one SD in height-for-age was associated with a 0.125-point reduction in education level, 0.4 years shortened length of the school, 6% higher chances of failing grades and dropouts from secondary school, and 0.19-0.24 SD lowered cognitive and numerical scores. Similarly, stunting tends to decrease cognitive test scores by 0.56-0.8 SD compared to non-stunting and reduce educational achievement by 0.38 points, 1.4 years shorter schooling, 17.7% and 23% more likely to fail grades. In addition, HAZ and stunting are also associated with the school entry age of 0.35 and 0.11 years, respectively.
description: stunting, relative height, growth retardation, educational outcomes, cognitive abilities.
DOI: 10.5281/zenodo.7553743
title: Dataset: Stunting and Its Association with Education and Cognitive Outcomes in Adulthood: A Longitudinal Study in Indonesia

description: Abstract Stunting is associated with adverse outcomes in adulthood. This article specifically aims to analyse the relationship between childhood stunting and education as well as cognitive outcomes for adults in Indonesia. Pooled data from two waves of the Indonesia Family Life Survey in 1993 and 1997, identified 4851 children aged 0-5 by their stunting status as well as their relative height to be compared for their differences in educational outcomes and cognitive abilities in 2014. Height-for-age z-score was used to proxy relative height and determine stunting status based on 2006 WHO child’s growth standards. The outcomes for education and cognitive abilities include educational levels, years of schooling, age of school entry, failing a grade, and scores for cognitive tests. The study employs estimation models of pooled regressions and instrumental variables. Stunting and relatively small stature had a significant association with cognitive development, and they worked as an intermediary to cognitive developmental barriers manifested in reduced educational outcomes. A lack of one SD in height-for-age was associated with a 0.125-point reduction in education level, 0.4 years shortened length of the school, 6% higher chances of failing grades and dropouts from secondary school, and 0.19-0.24 SD lowered cognitive and numerical scores. Similarly, stunting tends to decrease cognitive test scores by 0.56-0.8 SD compared to non-stunting and reduce educational achievement by 0.38 points, 1.4 years shorter schooling, 17.7% and 23% more likely to fail grades. In addition, HAZ and stunting are also associated with the school entry age of 0.35 and 0.11 years, respectively.
description: stunting, relative height, growth retardation, educational outcomes, cognitive abilities.
DOI: 10.6084/m9.figshare.21930003
title: Shifts in above- versus below-ground carbon gains to terrestrial ecosystems carbon sinks under excess nitrogen inputs

description: Although elevated atmospheric nitrogen (N) deposition can increase terrestrial carbon (C) sinks, the persistence of this C acquisition depends partly on the responses of plant biomass and soil organic carbon (SOC) to long-term exogenous N input. Experiments with N-additions show increases in above-ground biomass (AGB), although C dynamics between above- and below-ground under N enrichment are unconnected in many studies. Here, we meta-analyzed data from 362 N-addition experiments globally and found that both AGB (+34%) and below-ground biomass (BGB, +13% ) positively but root-to-shoot ratios negatively (-15%) responded to N addition. These responses were reversed, however, when the experimental duration was over 20 years, wherein BGB increased and AGB was unchanged or even declined, during which time plants invested more C to roots. The effects of increased AGB were weak and negative whereas those of increased BGB were robust and positive on SOC. Under chronic N deposition, the significant increase in SOC (5%) was associated with the increased root C inputs and decreased soil C losses rather than with increased above-ground C inputs. Results suggest that the sequestration of below-ground C exceeds that of above-ground C to sustain terrestrial C gain during long-term N deposition.
DOI: 10.6084/m9.figshare.21930003.v1
title: Shifts in above- versus below-ground carbon gains to terrestrial ecosystems carbon sinks under excess nitrogen inputs

description: Although elevated atmospheric nitrogen (N) deposition can increase terrestrial carbon (C) sinks, the persistence of this C acquisition depends partly on the responses of plant biomass and soil organic carbon (SOC) to long-term exogenous N input. Experiments with N-additions show increases in above-ground biomass (AGB), although C dynamics between above- and below-ground under N enrichment are unconnected in many studies. Here, we meta-analyzed data from 362 N-addition experiments globally and found that both AGB (+34%) and below-ground biomass (BGB, +13% ) positively but root-to-shoot ratios negatively (-15%) responded to N addition. These responses were reversed, however, when the experimental duration was over 20 years, wherein BGB increased and AGB was unchanged or even declined, during which time plants invested more C to roots. The effects of increased AGB were weak and negative whereas those of increased BGB were robust and positive on SOC. Under chronic N deposition, the significant increase in SOC (5%) was associated with the increased root C inputs and decreased soil C losses rather than with increased above-ground C inputs. Results suggest that the sequestration of below-ground C exceeds that of above-ground C to sustain terrestrial C gain during long-term N deposition.
DOI: 10.5281/zenodo.6519844
title: A curated data resource of 214K metagenomes for characterization of the global resistome

description: <strong>Data files of the curated resource of 214K metagenomes </strong> <strong>for characterization of the global resistome.</strong> We have retrieved 214K metagenomic samples and now share the results here on Zenodo of our large-scale read mapping effort. There are five tables uploaded in three formats (TSV, HDF and MySQL dump): metadata.* : contains metadata for all sequencing runs. ARG.* : contain read alignment counts of antimicrobial resistance genes (ARGs). rRNA.* : contain read alignment counts of 16S/18S rRNA genes.<sup>1</sup> diversity.* : contain diversity measures for ARGs and two taxonomic groups of rRNA genes (phylum, genus). ResFinder_anno.* : contain sequence information on the different ARGs, such as gene_lengths, resistance class, etc. Note that the HDF file rRNA.h5 is split into batches of 10,000 rows. To load it, the keys are in the format of "table_{i}", where i=0,1,2,..,4736 Details on the different tables are available at https://hmmartiny.github.io/mARG/ Any further questions or issues, please contact H.-M. Martiny at hanmar@food.dtu.dk
description: This work has been funded by European Union's Horizon H2020 grant VEO (874735) and the Novo Nordisk Foundation (grant NNF16OC0021856: Global Surveillance of Antimicrobial Resistance)
DOI: 10.5281/zenodo.6519843
title: A curated data resource of 214K metagenomes for characterization of the global resistome

description: <strong>Data files of the curated resource of 214K metagenomes </strong> <strong>for characterization of the global resistome.</strong> We have retrieved 214K metagenomic samples and now share the results here on Zenodo of our large-scale read mapping effort. There are five tables uploaded in three formats (TSV, HDF and MySQL dump): metadata.* : contains metadata for all sequencing runs. ARG.* : contain read alignment counts of antimicrobial resistance genes (ARGs). rRNA.* : contain read alignment counts of 16S/18S rRNA genes.<sup>1</sup> diversity.* : contain diversity measures for ARGs and two taxonomic groups of rRNA genes (phylum, genus). ResFinder_anno.* : contain sequence information on the different ARGs, such as gene_lengths, resistance class, etc. Note that the HDF file rRNA.h5 is split into batches of 10,000 rows. To load it, the keys are in the format of "table_{i}", where i=0,1,2,..,4736 Details on the different tables are available at https://hmmartiny.github.io/mARG/ Additionaly, we have shared the data used to create the figures in the manuscript in the ZIP file named "figure_data.zip". Any further questions or issues, please contact H.-M. Martiny at hanmar@food.dtu.dk <strong>Update log</strong>: * 2023-01-20: Update Diversity tables due to wrong total_fragments entered for ~250 run_accessions.
description: This work has been funded by European Union's Horizon H2020 grant VEO (874735) and the Novo Nordisk Foundation (grant NNF16OC0021856: Global Surveillance of Antimicrobial Resistance)
DOI: 10.5281/zenodo.6919377
title: A curated data resource of 214K metagenomes for characterization of the global resistome

description: <strong>Data files of the curated resource of 214K metagenomes </strong> <strong>for characterization of the global resistome.</strong> We have retrieved 214K metagenomic samples and now share the results here on Zenodo of our large-scale read mapping effort. There are five tables uploaded in three formats (TSV, HDF and MySQL dump): metadata.* : contains metadata for all sequencing runs. ARG.* : contain read alignment counts of antimicrobial resistance genes (ARGs). rRNA.* : contain read alignment counts of 16S/18S rRNA genes.<sup>1</sup> diversity.* : contain diversity measures for ARGs and two taxonomic groups of rRNA genes (phylum, genus). ResFinder_anno.* : contain sequence information on the different ARGs, such as gene_lengths, resistance class, etc. Note that the HDF file rRNA.h5 is split into batches of 10,000 rows. To load it, the keys are in the format of "table_{i}", where i=0,1,2,..,4736 Details on the different tables are available at https://hmmartiny.github.io/mARG/ Additionaly, we have shared the data used to create the figures in the manuscript in the ZIP file named "figure_data.zip". Any further questions or issues, please contact H.-M. Martiny at hanmar@food.dtu.dk
description: This work has been funded by European Union's Horizon H2020 grant VEO (874735) and the Novo Nordisk Foundation (grant NNF16OC0021856: Global Surveillance of Antimicrobial Resistance)
DOI: 10.5281/zenodo.7553776
title: A curated data resource of 214K metagenomes for characterization of the global resistome

description: <strong>Data files of the curated resource of 214K metagenomes </strong> <strong>for characterization of the global resistome.</strong> We have retrieved 214K metagenomic samples and now share the results here on Zenodo of our large-scale read mapping effort. There are five tables uploaded in three formats (TSV, HDF and MySQL dump): metadata.* : contains metadata for all sequencing runs. ARG.* : contain read alignment counts of antimicrobial resistance genes (ARGs). rRNA.* : contain read alignment counts of 16S/18S rRNA genes.<sup>1</sup> diversity.* : contain diversity measures for ARGs and two taxonomic groups of rRNA genes (phylum, genus). ResFinder_anno.* : contain sequence information on the different ARGs, such as gene_lengths, resistance class, etc. Note that the HDF file rRNA.h5 is split into batches of 10,000 rows. To load it, the keys are in the format of "table_{i}", where i=0,1,2,..,4736 Details on the different tables are available at https://hmmartiny.github.io/mARG/ Additionaly, we have shared the data used to create the figures in the manuscript in the ZIP file named "figure_data.zip". Any further questions or issues, please contact H.-M. Martiny at hanmar@food.dtu.dk <strong>Update log</strong>: * 2023-01-20: Update Diversity tables due to wrong total_fragments entered for ~250 run_accessions.
description: This work has been funded by European Union's Horizon H2020 grant VEO (874735) and the Novo Nordisk Foundation (grant NNF16OC0021856: Global Surveillance of Antimicrobial Resistance)