cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2gsvjn
title: CCDC 2288002: Experimental Crystal Structure Determination

description: Related Article: Qiang Li, Li-Li Tan, Li Shang|2024|Sci.Bull.|69|2670|doi:10.1016/j.scib.2024.07.014
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k9625
title: CCDC 2362326: Experimental Crystal Structure Determination

description: Related Article: Jing Feng,  Jing Liu,  Yi-Zhu Lei,  Hu Wang,  Hai-Long Liu,  Yuan-Lan Wang,  Ren-Shu Wang|2025|J.Mol.Struct.|1321|139773|doi:10.1016/j.molstruc.2024.139773
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k967b
title: CCDC 2362331: Experimental Crystal Structure Determination

description: Related Article: Jing Feng,  Jing Liu,  Yi-Zhu Lei,  Hu Wang,  Hai-Long Liu,  Yuan-Lan Wang,  Ren-Shu Wang|2025|J.Mol.Struct.|1321|139773|doi:10.1016/j.molstruc.2024.139773
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k9636
title: CCDC 2362327: Experimental Crystal Structure Determination

description: Related Article: Jing Feng,  Jing Liu,  Yi-Zhu Lei,  Hu Wang,  Hai-Long Liu,  Yuan-Lan Wang,  Ren-Shu Wang|2025|J.Mol.Struct.|1321|139773|doi:10.1016/j.molstruc.2024.139773
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dd.vvuw8j
title: Derived Dataset Pseudacris crucifer

description: This data was filtered using CoordinateCleaner and scrubr
DOI: 10.15468/dl.g48vdj
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is China",
 "GadmGid is CHN.30_1",
 "TaxonKey is Cynanchum corymbosum Wight"
 ]
}

 The dataset includes 63 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039340-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5518/269
title: Dataset supporting the publication ‘A Comprehensive Combined Experimental and Computational Framework for Pre-clinical Wear Simulation of Total Knee Replacements’

description: A more robust pre-clinical wear simulation framework is required in order to simulate wider and higher ranges of activities, observed in different patient populations such as younger more active patients. Such a framework will help to understand and address the reported higher failure rates for younger and more active patients (National_Joint_Registry, 2016). The current study has developed and validated a comprehensive combined experimental and computational framework for pre-clinical wear simulation of total knee replacements (TKR). The input mechanical (elastic modulus and Poisson’s ratio) and wear parameters and of the moderately cross-linked ultra-high molecular weight polyethylene (UHMWPE) bearing material were independently measured from experimental studies under realistic test conditions, similar to the loading conditions found in the total knee replacements.. The wear predictions from the computational wear simulation were validated against the direct experimental wear measurements for size 3 Sigma curved total knee replacements (DePuy, UK) in an independent experimental wear simulation study under three different daily activities; walking, deep squat, and stairs ascending kinematic conditions. The measured compressive mechanical properties of the moderately cross-linked UHMWPE material were more than 20% lower than that reported in the literature under tensile test conditions. The pin-on-plate wear coefficient of moderately cross-linked UHMWPE was significantly dependant of the contact stress and the degree of cross-shear at the articulating surfaces. The computational wear predictions for the TKR from the current framework were consistent and in a good agreement with the independent full TKR experimental wear simulation measurements, with 0.94 coefficient of determination of the framework. In addition, the comprehensive combined experimental and computational framework was able to explain the complex experimental wear trends from the three different daily activities investigated. Therefore, such a framework can be adopted as a pre-clinical simulation approach to optimise different designs, materials, as well as patient’s specific total knee replacements for a range of activities.
DOI: 10.15468/dd.2u96m8
title: Derived Dataset Pseudacris crucifer

description: This data was filtered using CoordinateCleaner and scrubr
DOI: 10.25345/c52n4zw0f
title: MassIVE MSV000096019 - PU.1 Eviction at Lymphocyte-Specific Chromatin Domains Mediates Glucocorticoid Response in Acute Lymphoblastic Leukemia
title: LC-MS data and DIA-NN search files relating to: PU.1 Eviction at Lymphocyte-Specific Chromatin Domains Mediates Glucocorticoid Response in Acute Lymphoblastic Leukemia. Abstract: The epigenetic landscape plays a critical role in the onset and evolution of various malignancies, but its therapeutic utility remains underutilized. Glucocorticoids are an essential part of many multi-agent treatment regimens for lymphoid malignancies. However, the emergence of glucocorticoid resistance is a significant barrier to cure, which is in part due to epigenetic alterations, including aberrant chromatin accessibility and hypermethylation at lymphocyte-specific glucocorticoid-response elements (GREs). To gain a deeper understanding of regulatory mechanisms leading to these epigenetic alterations, we conducted a multi-omics study, including chromosome conformation capture sequencing (HiC), to examine changes in the 3D genome structure following the in vivo treatment of acute lymphoblastic leukemia (ALL) patient-derived xenografts (PDXs) with glucocorticoid. We found that glucocorticoid treatment led to distinct patterns of topologically associated domains (TADs) in glucocorticoid sensitive compared to resistant PDXs. Furthermore, we show that these TADs were primed by the development-related pioneer transcription factor PU.1, which extensively interacts with the glucocorticoid receptor (GR) exclusively in glucocorticoid-sensitive ALL PDXs. An integrative analysis of rapid immunoprecipitation mass spectrometry of endogenous protein (RIME) and ChIP-seq revealed that PU.1 binding was associated with lymphocyte-specific activation of GREs and GRE-interacting super-enhancers. The PU.1-associated TADs modulated epigenetic marks, and particularly the eviction of PU.1 promoted GR binding and the expression of signature genes, including BIM, ZBTB16 and RASA1, mediating glucocorticoid-induced apoptosis in ALL. These findings were phenocopied using a PU.1 inhibitor DB2313 to restore glucocorticoid sensitivity in ALL. Taken together, this study identified a new epigenetic pathway integrating PU.1 priming and PU.1-GR interaction which ultimately leads to PU.1 eviction in ALL. This pathway provides the first link between the activity of a lineage-specific transcription factor and epigenetic modulators mediating the response to glucocorticoids and thus offers a new avenue to translate fundamental epigenetic research into the clinic.
DOI: 10.15468/dd.aycjxh
title: Derived Dataset Pseudacris crucifer

description: This data was filtered using CoordinateCleaner and scrubr
DOI: 10.15468/dl.ywhb42
title: Occurrence Download

description: A dataset containing 700 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-57.11603 -63.5104,-56.21387 -63.27167,-57.08372 -61.47624,-57.35887 -60.83739,-59.23974 -61.35103,-63.46895 -62.47086,-62.34214 -64.95155,-57.11603 -63.5104))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (December, January, February, March)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pygoscelis adeliae (Hombron & Jacquinot, 1841)",
 "Year 2014-2024"
 ]
}

 The dataset includes 700 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039341-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dd.ymx4z4
title: Derived Dataset Pseudacris crucifer

description: This data was filtered using CoordinateCleaner and scrubr
DOI: 10.5281/zenodo.12682504
title: Data from Automatic Lidar and Ceilometer (ALC) measurements at Paris – Chemin Vert Bobigny (PACHEM) from 2023-08-22 to 2024-02-21 [RAW]

description: Original data files from ALC measurements at Paris - Chemin Vert Bobigny (PACHEM)
description: TECHNICAL INFO

No data quality control has been carried out. No gap-filling has been applied. Detailed information about the site and deployment can be found in the Technical documentation of the urbisphere-Paris campaign.

ACKNOWLEDGEMENTS

Authors thank SIRTA/LMD staff for providing support and facilities; members of the Infoclimat community (https://www.infoclimat.fr); ATMO-TNA-3—0000000125 funding. The data are collected by an ALC provided for by Karlsruhe Institute of Technology - KIT/IMK-IFU.

COPYRIGHT NOTICE

Copyright Jörn Birkmann, Andreas Christen, Nektarios Chrysoulakis, and Sue Grimmond. Some rights reserved.

CREATOR NOTICE

This work is owned by the Principal Investigators (PIs) of the Urbisphere project.

ATTRIBUTION NOTICE

The [creation and] curation of this work has been funded by the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement No 855005).

DISCLAIMER NOTICE

The use of the work is at the user's own risk. The authors, the involved institutions, and/or the European Research Council accept no liability for material or non-material damage arising from the use or non-use or from the use of incorrect or incomplete information in this work. The authors, the involved institutions, and/or the European Research Council are not responsible for any use that may be made of the information in this work. The legal provisions remain unaffected.

MATERIAL NOTICE

The notices cover data in databases, text and images contained in the work.

MATERIAL URI

Urbisphere project
DOI: 10.5281/zenodo.12682505
title: Data from Automatic Lidar and Ceilometer (ALC) measurements at Paris – Chemin Vert Bobigny (PACHEM) from 2023-08-22 to 2024-02-21 [RAW]

description: Original data files from ALC measurements at Paris - Chemin Vert Bobigny (PACHEM)
description: TECHNICAL INFO

No data quality control has been carried out. No gap-filling has been applied. Detailed information about the site and deployment can be found in the Technical documentation of the urbisphere-Paris campaign.

ACKNOWLEDGEMENTS

Authors thank SIRTA/LMD staff for providing support and facilities; members of the Infoclimat community (https://www.infoclimat.fr); ATMO-TNA-3—0000000125 funding. The data are collected by an ALC provided for by Karlsruhe Institute of Technology - KIT/IMK-IFU.

COPYRIGHT NOTICE

Copyright Jörn Birkmann, Andreas Christen, Nektarios Chrysoulakis, and Sue Grimmond. Some rights reserved.

CREATOR NOTICE

This work is owned by the Principal Investigators (PIs) of the Urbisphere project.

ATTRIBUTION NOTICE

The [creation and] curation of this work has been funded by the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement No 855005).

DISCLAIMER NOTICE

The use of the work is at the user's own risk. The authors, the involved institutions, and/or the European Research Council accept no liability for material or non-material damage arising from the use or non-use or from the use of incorrect or incomplete information in this work. The authors, the involved institutions, and/or the European Research Council are not responsible for any use that may be made of the information in this work. The legal provisions remain unaffected.

MATERIAL NOTICE

The notices cover data in databases, text and images contained in the work.

MATERIAL URI

Urbisphere project
DOI: 10.15468/dl.dpn5jq
title: Occurrence Download

description: A dataset containing 30144660 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Apodiformes"
 ]
}

 The dataset includes 30144660 records from 5954 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039312-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c7n62z
title: Occurrence Download

description: A dataset containing 804 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Leptobalanus apetalus var. apetalus, Licania apetala var. apetala, Licania apetala var. pendula (Benth.) Fritsch, Licania dahlgrenii Standl., Licania floribunda Benth. ex Hook.f., 1867, Licania hylaea Cuatrec., Licania pendula Benth., Moquilea floribunda Benth., 1840, Moquilea orinocensis Rusby, Moquilea pendula (Benth.) Hook.fil.)"
 ]
}

 The dataset includes 804 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005304-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ag4gur
title: Occurrence Download

description: A dataset containing 503 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Licania pallida (Hook.fil.) Spruce ex Sagot, Licania parviflora var. pallida Hook.fil.)"
 ]
}

 The dataset includes 503 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005305-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tvqrbt
title: Occurrence Download

description: A dataset containing 6293 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Xenodacnis parina Cabanis, 1873"
 ]
}

 The dataset includes 6293 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005306-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.spwv5r
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ismene amancaes (Ruiz & Pav.) Herb."
 ]
}

 The dataset includes 103 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005307-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d8y9sg
title: Occurrence Download

description: A dataset containing 2448 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Cariniana estrellensis (Raddi) Kuntze, Cariniana excelsa Casar., Cariniana excelsa var. puberula Chodat & Hassl., Couratari estrellensis Raddi, Couratari glaziovii Taub., 1908)"
 ]
}

 The dataset includes 2448 records from 161 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005308-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gs3f76
title: Occurrence Download

description: A dataset containing 341 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coniophanes piceivittis Cope, 1870"
 ]
}

 The dataset includes 341 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005309-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t2htp5
title: Occurrence Download

description: A dataset containing 393 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Licania polita Spruce ex Hook.fil., Licania laurifolia Huber, Licania laxa Fanshawe & Maguire, Licania poeppigii Fritsch)"
 ]
}

 The dataset includes 393 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005310-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.58vqcy
title: Occurrence Download

description: A dataset containing 693 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Moquilea tomentosa Benth., Licania tomentosa (Benth.) Fritsch, Moquilea tomentosa var. angustifolia Hook.fil., Moquilea tomentosa var. latifolia Hook.fil., Pleragina odorata Arruda)"
 ]
}

 The dataset includes 693 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005311-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.te8ejc
title: Occurrence Download

description: A dataset containing 180 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Hirtella macrophylla Benth. ex Hook.fil.)"
 ]
}

 The dataset includes 180 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005313-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12594937
title: Metadata

description: Supplementary material
DOI: 10.5281/zenodo.12594938
title: Metadata

description: Supplementary material
DOI: 10.15468/dl.x7m7vb
title: Occurrence Download

description: A dataset containing 501 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Moquilea brittoniana (Fritsch) Sothers & Prance, Licania brittoniana Fritsch, Licania elata (Pilg.) Pilg., Moquilea elata Pilg.)"
 ]
}

 The dataset includes 501 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005314-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rc4ufx
title: Occurrence Download

description: A dataset containing 179371 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "TaxonKey is one of (Aponogeton distachyos L.f., Arthurdendyus triangulatus (Dendy, 1895), Cabomba caroliniana A.Gray, Callosciurus finlaysonii (Horsfield, 1823), Cherax destructor Clark, 1936, Corvus splendens Vieillot, 1817, Crassula helmsii (Kirk) Cockayne, Elodea densa (Planch.) Casp., Eriocheir sinensis H.Milne Edwards, 1853, Erythranthe guttata (DC.) G.L.Nesom, Faxonius immunis (Hagen, 1870), Faxonius juvenilis (Hagen, 1870), Faxonius rusticus (Girard, 1852), Faxonius virilis (Hagen, 1870), Gambusia affinis (Baird & Girard, 1853), Heracleum mantegazzianum Sommier & Levier, Heracleum persicum Desf. ex Fisch., C.A.Mey. & Avé-Lall., Heracleum pubescens (Hoffm.) M.Bieb., Houttuynia cordata Thunb., Hydrocotyle ranunculoides L.f., Impatiens glandulifera Royle, Koenigia polystachya (Wall. ex Meisn.) T.M.Schust. & Reveal, Lagarosiphon major (Ridl.) Moss, Lepomis gibbosus (Linnaeus, 1758), Limnoperna fortunei (Dunker, 1857), Ludwigia grandiflora (Michx.) Greuter & Burdet, Ludwigia peploides (Kunth) P.H.Raven, Lysichiton americanus Hultén & H.St.John, Morone americana (Gmelin, 1789), Muntiacus reevesi (Ogilby, 1839), Myriophyllum aquaticum (Vell.) Verdc., Myriophyllum heterophyllum Michx., Pacifastacus leniusculus (Dana, 1852), Petasites japonicus (Siebold & Zucc.) Maxim., Pontederia cordata L., Procambarus acutus (Girard, 1852), Procambarus clarkii (Girard, 1852), Procambarus virginalis Lyko, 2017, Pseudorasbora parva (Temminck & Schlegel, 1846), Pycnonotus cafer (Linnaeus, 1766), Saururus cernuus L., Sciurus carolinensis Gmelin, 1788, Sciurus niger Linnaeus, 1758, Solenopsis invicta Buren, 1972, Solenopsis richteri Forel, 1909, Threskiornis aethiopicus (Latham, 1790), Vespa velutina Lepeletier, 1836, Zizania latifolia (Griseb.) Hance ex F.Muell.)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 179371 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005294-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8pxd55
title: Occurrence Download

description: A dataset containing 1043524 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Belgium, Germany, Netherlands)",
 "TaxonKey is one of (Ondatra zibethicus (Linnaeus, 1766), Myocastor coypus (Molina, 1782))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1043524 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005293-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gvzyvb
title: Occurrence Download

description: A dataset containing 1080 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Licania canescens Benoist)"
 ]
}

 The dataset includes 1080 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005315-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f5dm5b
title: Occurrence Download

description: A dataset containing 9547146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 9547146 records from 2546 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005312-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/nwp-fzb-ehn
title: Lomographa bimaculata (Fabricius, 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/9s5-hfa-y7j
title: Lomographa temerata ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/q7q-6jk-1vx
title: Lomographa temerata ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.