cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28350683.v1
title: Ocean mooring time series from Ronne Ice Self Site 5c

description: Processed mooring time series from Ronne Ice Shelf Site 5c, including conservative temperature, absolute salinity and velocity components u and v. The data are described in the paper: Anselin J., Nicholls K.W., Holland P.R., Taylor J.R., Osterhus S., Makinson K. Tidal current vertical structure and basal melt rate variability from observations beneath Ronne Ice Shelf, Antarctica. Submitted
DOI: 10.6084/m9.figshare.5127997.v1
title: Supplementary Material for: Cytomegalovirus Infection Minimally Affects the Frequencies of B-Cell Phenotypes in Peripheral Blood of Younger and Older Adults

description: <b><i>Background:</i></b> An accumulation of late-differentiated CD8+ T-cells together with fewer B-cells and seropositivity for cytomegalovirus (CMV) characterises an ‘immune risk profile' associated with mortality in elderly people and represents one of the hallmarks of ‘immunosenescence'. <b><i>Objectives:</i></b> While differences in memory T-cell phenotypes between young and old people have been intensively studied, and the role of CMV is well-accepted as a driving force in this regard, the impact of CMV on B-cells, if any, has been relatively neglected thus far. <b><i>Methods:</i></b> Here, we avail ourselves of blood samples from participants of the Berlin Aging Study II (BASE-II) to compare peripheral blood B-cell differentiation phenotypes of 140 age- and gender-matched CMV-seronegative or -seropositive adults aged between 24 and 85 years using multicolour flow cytometry analysis. <b><i>Results:</i></b> We found that the frequencies of naïve B-cells within the CD19+ population were not significantly different in younger and older CMV-seronegative people. This was also true in CMV-seropositive subjects. The frequencies of late-differentiated B-cells were also not different in CMV-negative elderly and young. However, in marked contrast to the T-cell compartment, this was also true for late differentiated B-cells. Within age groups, the most marked differences in the distribution of B-cell phenotypes were between CMV-seronegative and -seropositive subjects, for both genders. <b><i>Conclusion:</i></b> These results emphasize the importance of including CMV serostatus in the analysis of immune signatures. Because the proportion of the population infected with CMV increases with age, the effect of CMV rather than age could confound analyses seeking age-associated changes to human immunity.
DOI: 10.6084/m9.figshare.24305557.v4
title: <b>A benchmark</b><b> </b><b>GaoFen-7</b><b> </b><b>dataset for building extraction from satellite images</b>

description: This study constructs a high-resolution (0.65 m) GaoFen-7 (GF-7) Building dataset utilizing the Chinese GF-7 imagery from Tianjin, Lanzhou, Chongqing, Ningbo, Guangzhou, and Shenzhen. The dataset comprises 5175 pairs of 512×512 image tiles (including 3106 pairs in the training set, 1034 pairs in the validation set, and 1035 pairs in the test set), totally covering an area of 573.17 km<sup>2</sup> in China. It contains a total of 170,015 buildings, out of which 145,327 buildings (84.8%) are distributed in urban areas, while the remaining 24,688 buildings (15.2%) are distributed across rural areas. These high-quality labels are mainly generated through manual digitization.
DOI: 10.6084/m9.figshare.6391124.v1
title: Supplementary Material for: MicroRNAs Associated with Epithelial-Mesenchymal Transition Can Be Targeted to Inhibit Peritoneal Dissemination of Human Scirrhous Gastric Cancers

description: <b><i>Objectives:</i></b> Scirrhous gastric cancers grow rapidly, and frequently invade the peritoneum. Such peritoneal dissemination properties markedly reduce patient survival. Thus, an effective means for inhibiting peritoneal dissemination is urgently required. <b><i>Methods:</i></b> We previously established a cell line, HSC-58, from a scirrhous gastric cancer patient, and further successfully isolated a metastatic line, 58As9, in nude mice upon orthotopic inoculation. Using the lines, we examined the mechanism underlying peritoneal dissemination from the viewpoint of microRNA (miRNA) expression. <b><i>Results:</i></b> miRNA array and qRT-PCR analysis showed that the expressions of epithelial-mesenchymal transition (EMT)-associated miRNAs such as miR-200c and miR-141 were significantly low in 58As9. Using 58As9 with stably overexpressing miR-200c, miR-141, or both, together with a luciferase reporter assay, we found that miR-200c targeted zinc finger E-box-binding homeobox 1 (ZEB1) and miR-141 targeted ZEB2. The overexpressed lines reversed the EMT status from mesenchymal to epithelial in 58As9, and significantly reduced the invasion activity and peritoneal dissemination for a significant prolongation of survival in the orthotopic tumor models in nude mice. <b><i>Conclusions:</i></b> EMT-associated miRNAs such as miR-200c and miR-141 and their target genes ZEB1/ZEB2 have good potential for antiperitoneal dissemination therapy in patients with scirrhous gastric cancers.
DOI: 10.17632/jgcg2y64sw
title: Data for: The impacts of government ideology on innovation: What are the main implications?

description: see detailed in data file
DOI: 10.6084/m9.figshare.19136933.v1
title: Dataset used for "Sentiment and structure in word co-occurrence networks on Twitter"

description: This dataset gives the tweet IDs for the tweets used in our paper "Sentiment and structure in word co-occurrence networks on Twitter" published in Applied Network Science. The tab-separated file contains the tweet ID (column "tid") of the tweet as well as its assumed stance (column "Stance": values "FAVOR" or "AGAINST"). The "ALL" corpus is generated by using all the tweets in the file regardless of the assumed stance. While we cannot provide the raw tweet texts as a publicly available dataset, they can be obtained by querying the Twitter API for these tweet IDs.
DOI: 10.6084/m9.figshare.27050770.v1
title: genome sequence and annotations

description: Genome sequence and annotations of soybean cultivar "ChiHei 23".
DOI: 10.6084/m9.figshare.28916834.v1
title: Supplementary Table21 Arabidopsis_Glycine max_DW-Score Top5 Percent_Gene_Correspondence_Table.csv

description: Currently, domesticated species available on the market have been developed through the breeding of wild relatives. We collected gene expression data of domesticated species of rice, tomato, and soybean, along with their presumed ancestral species, and conducted a meta-analysis to investigate differentially expressed genes during domestication. In wild relatives, the expression of gene groups involved in osmotic, drought, and wound stress tolerance was upregulated. In contrast, in domesticated species, upregulated ex-pression was observed in gene groups related to auxin and those involved in the efflux of heavy metals and harmful substances. By identifying these genes with differential ex-pression levels, we can gain insights into how domestication has influenced changes in crop traits. In particular, breeding strategies that make use of wild relatives with high genetic diversity are attracting attention as an important approach for addressing climate change and ensuring a sustainable food supply. The findings obtained in this study are expected to contribute to the realization of rapid breeding and the development of new varieties capable of growing in harsh natural environments. To address this issue, a new cultivation method called "De novo domestication" has been proposed, which combines the genetic diversity of currently unused wild relatives and wild relatives with genome editing technologies that enable rapid breeding.
DOI: 10.17632/7h4rd77gx5
title: Velostat Development Kit

description: Welcome to the Velostat Development Kit (VDK) repository! This repository contains all the necessary components for the VDK, my Master's thesis. It is organized into several directories, each serving a specific purpose in the project development and implementation.
DOI: 10.17632/hhbwyvcxvs
title: Data for: Data-Driven Ambulance Deployment: Closing the Optimality Gap for Online Dispatch

description: These reports provide details for the plots and results in the paper. They contain processed research data that is based on a few sources. 1. OpenStreetMap data licensed under the Open Data Commons Open Database License (ODbL) by the OpenStreetMap Foundation (OSMF). &gt; You are free to copy, distribute, transmit and adapt our data, as long as you credit OpenStreetMap and its contributors. If you alter or build upon our data, you may distribute the result only under the same licence. The full legal code at https://opendatacommons.org/licenses/odbl/1.0/ explains your rights and responsibilities. See details of the copyright and license here: https://www.openstreetmap.org/copyright. 2. ERDA data obtained with a Freedom of Information Act (FOIA) request to the Fire and Emergency Medical Services Department (FEMS) of the District of Columbia, processed by CodeForDC. The code for processing the data is made available under the BSD 3-clause license in https://github.com/codefordc/ERDA, with links to the original and processed data. 3. A map of neighborhood boundaries in the District of Columbia. The Washington Post derived the neighborhood boundaries by reviewing original subdivision data, by reviewing neighborhood maps published in The Post's Where We Live real estate section and by consulting community sources. The 217 neighborhoods shown are intended for standardized data analysis purposes. Work based on data acquired from Washington Post's Homicides in the District interactive map. Data was scraped/cleaned up by @justgrimes from Code for DC, and retrieved from http://www.opendatadc.org/dataset/neighborhood-boundaries-217-neighborhoods-washpost-justgrimes on 11:40AM, 18 September 2015 EDT.
DOI: 10.6084/m9.figshare.12996947.v1
title: Sumatrantiger_WGS_poolseq_VCF

description: While recent advances in genomics has enabled vast improvements in the quantification of genome-wide diversity and the identification of adaptive and deleterious alleles in model species, wildlife and non-model species have largely not reaped the same benefits. Here, we demonstrate the utility of cross-species genome alignment methods in gaining insights into population structure and functional genomic features in the cheetah, snow leopard and Sumatran tiger, relative to the domestic cat. <br>
DOI: 10.6084/m9.figshare.25932532.v1
title: Prioritizing conservation corridors to enhance connectivity and mitigate multidimensional vulnerabilities in protected area networks

description: Expanding and connecting protected areas (PAs) is crucial to meet the ambitious goals of the Kunming-Montreal Global Biodiversity Framework (GBF), yet the interplay between these targets remains poorly understood. Here we introduce a novel framework for developing conservation priority corridors (CPCs) that balances connectivity, cost-effectiveness, and biodiversity value. Our framework integrates critical connectivity corridors with conservation priority zones, identifying priority areas for conservation action across three scenarios: conservative, moderate, and ambitious. We demonstrate that the moderate CPC scenario offers a pragmatic pathway to achieving the GBF's targets in China, increasing PA coverage to 34%, effectively connecting half of existing PAs, and safeguarding nearly 40% of conservation priority zones. While CPCs face heightened climate-related threats, they exhibit lower vulnerability to human activities and vegetation shifts, highlighting the critical role of connectivity in enhancing resilience to climate change. Our CPC framework identifies the most vulnerable regions and pressing conservation challenges, providing valuable guidance for targeted conservation efforts. This integrative approach offers a practical and impactful pathway to achieving the ambitious goals of the Kunming-Montreal GBF.
DOI: 10.17632/f8xrgg9xjx
title: TAČR_project_management_key_competencies

description: The results of the questionnaire sent to 120 practising project managers in the Czech Republic regarding their competencies.
DOI: 10.17632/rczj5c6f7v
title: Aedes-Dirofilaria_Resistance-Tolerance (raw data)

description: This data is from the experiments with Aedes albopictus and Aedes Aegypti infected with Dirofilaria immitis. Please email Guha Dharmarajan (guha.dharmarajan@gmail.com) for the R code used to analyze the data
DOI: 10.6084/m9.figshare.11627082.v1
title: Supplementary Material for: Steroid 17-Hydroxyprogesterone in Hair Is a Potential Long-Term Biomarker of Androgen Control in Congenital Adrenal Hyperplasia due to 21-Hydroxylase Deficiency

description: <b><i>Introduction:</i></b> To evaluate scalp hair steroid concentrations as a monitoring tool for androgen control and metabolic outcomes in adults with congenital adrenal hyperplasia (CAH) due to 21-hydroxylase deficiency. <b><i>Methods:</i></b> 17-hydroxyprogesterone (17-OHP), androstenedione, testosterone, cortisol, cortisone, progesterone, prednisolone, and prednisone concentrations were measured in scalp hair by means of LC-MS/MS in 27 women and 15 men with CAH and controls (37 women, 42 men). <b><i>Results:</i></b> In CAH men and women, 17-OHP levels in hair showed a significant positive correlation with corresponding levels in serum (ρ = 0.654; <i>p</i> = 0.01; ρ = 0.553, <i>p</i> = 0.003 respectively), while total testosterone levels were only significantly correlated in CAH men (ρ = 0.543; <i>p</i> = 0.036). Androstenedione levels did not show a significant correlation. Receiver-operating characteristic (ROC) curve analysis indicated that a cutoff value of 21.7 pg/mg for 17-OHP in hair provided a sensitivity of 100% and a specificity of 88.9% for identifying men with elevated serum androstenedione. Hair 17-OHP in women showed a poorer performance in terms of identifying those with elevated androstenedione serum levels. However, when applying a cutoff value of 5.5 for the free androgen index as a marker of significant hyperandrogenism in CAH women, 17-OHP &gt;27.6 pg/mg in hair provided a sensitivity of 100% and a specificity of 95.8% (AUC 0.986, 95% CI 0.945–1.000; <i>p</i> &lt; 0.001). Neither hair cortisol nor markers of adrenal androgen control in hair showed significant associations with cardiometabolic outcome or bone health. <b><i>Conclusion:</i></b> This study shows that scalp hair 17-OHP concentrations may be a promising noninvasive long-term parameter for treatment monitoring in adult patients with CAH.
DOI: 10.6084/m9.figshare.16620238.v4
title: A public dataset on long-distance running training in 2019 and 2020

description: This dataset contains 10,703,690 records of running training during 2019 and 2020, from 36,412 athletes from around the world. The records were obtained through web scraping of a large social network for athletes on the internet.<br>The data with the athletes' activities are contained in dataframe objects (tabular data) and saved in the Parquet file format using the Pandas library, part of the Python ecosystem for data science. Each Pandas dataframe contains the following data (as different columns) for each athlete (as different rows), the first word identifies the name of the column in the dataframe:- datetime: date of the running activity;- athlete: a computer-generated ID for the athlete (integer);- distance: distance of running (floating-point number, in kilometers);- duration: duration of running (floating-point number, in minutes);- gender: gender (string 'M' of 'F');- age_group: age interval (one of the strings '18 - 34', '35 - 54', or '55 +');- country: country of origin of the athlete (string);- major: marathon(s) and year(s) the athlete ran (comma-separated list of strings).<br>For convenience, we created files with the athletes' activities data sampled at different frequencies: day 'd', week 'w', month 'm', and quarter 'q' (i.e., there are files with the distance and duration of running accumulated at each day, week, month, and quarter) for each year, 2019 and 2020. Accordingly, the files are named 'run_ww_yyyy_f.parquet', where 'yyyy' is '2019' or '2020' and 'f' is 'd', 'w', 'm' or 'q' (without quotes). The dataset also contains data with different government’s stringency indexes for the COVID-19 pandemic. These data are saved as text files and were obtained from https://ourworldindata.org/covid-stringency-index. The Jupyter notebooks that we created and made available in the https://github.com/BMClab/covid19 repository exemplify the use of the data.
DOI: 10.6084/m9.figshare.19334180.v5
title: Data for "Accounting for NOx emissions from biomass burning and urbanization doubles existing inventories over South, Southeast and East Asia"

description: Fig_1_Mask_ROI.mat is the area mask and the standard deviation of OMI NO2 over the ROI.Fig_2_PC_EOF.mat is the EOF map and PC time series of the first 4 mode of OMI NO2 dataset.<br>Fig_3_EOF_PC_4_Typical_Urban_And_BB.mat s the 2 typical EOF map and extreme time series extracted for Urban areas and BB areas, respectively.<br>Fig_4_typical_daily_NOx_estimation.mat is 4 typical daily NOx emission in this paper.<br>Fig_5_NOx_Mean_Ratio_4_Estimation_EI.mat is the mean and ratio of Mean to standard deviation of NOx estimation and the existing emission inventories(FINN+EDGAR, both in EOF and Mask regions).<br>Fig_6_Timeseries_of_NOx_Est_EOF_Mask_4_Urban_BB.mat is the time series of NOx estimation, NOx emission inventory over EOF region and NOx emission inventory over mask region in Fig.1 for Urban and BB areas.<br>Fig_7_NOx_Estimation_PDF_Geolocation_4_LCT_types.mat is the NOx estimation and geolocation distribution of 3 land cover types.<br>Fig_8_NOx_Estimation_Comparison_4_Sensitivity_Runs.mat is the differences between Base+40%/Base-40% and Base, plus the time series comparisons of the three runs (Base+40%, Base-40% and Base) in both Urban and BB areas.<br>Sup_Fig_1_NO2_mean_ROI.mat is the mean of OMI NO2 over the ROI.<br>Sup_Fig_2_Lai_ROI.mat is the land cover types of MODIS over the ROI.<br>Sup_Fig_3_EOF_PC_4_SouthernCSA.mat s 3 typical EOF map and extreme time series extracted for Southern Continental Southeast Asia.<br>noxEst_year_2016.mat is the estimated NOx dataset for 2016 within this work.<br>estimateGridCoefEmission.m is the core MATLAB code used to fit the coefficients with Least Square Method and estimate the emission with bootstrap method.<br>Demo.zip is one example to help test the core code of this work.
DOI: 10.6084/m9.figshare.25102370.v1
title: miRNA manipulation and mRNAs expression changes in the brain of stress-susceptible and stress-resilience mice

description: The data made available relates to the manuscript entitled 'Modulating Stress Susceptibility and Resilience: Insights from miRNA Manipulation and Neural Mechanisms in Mice.' https://doi.org/10.1007/s12035-024-03922-1
DOI: 10.17608/k6.auckland.19388603.v1
title: Vcf_files

description: All filtered vcf files used in the analyses. File names correspond to Table S2 in the supplementary material of Salloum et al. 2022.<br>
DOI: 10.6084/m9.figshare.21723824.v1
title: Beauveria bassiana experimental data.xls

description: <em>Beauverfdjndjbewufhusnjcnjbuhfudhfdsfjjjdjdjdj</em> Change of conc Changation with days Change of concentration with days entration with days rious media (i. Change of concentration with days e., water, soil, and cotton leaf surface) at 28 ºC
DOI: 10.6084/m9.figshare.24899883.v1
title: Images.zip

description: Data
DOI: 10.6084/m9.figshare.9752813.v1
title: Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics

description: Files containing phage and actinobacterial genomes, associated with the paper "Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics".Files containing phage and actinobacterial genomes, associated with the paper "Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics".
DOI: 10.17632/rmc3m5zw2d
title: Data for: ‘What do we have to lose?’: Local economic decline, prospect theory, and support for Brexit

description: Replication files for "‘What do we have to lose?’: Local economic decline, prospect theory, and support for Brexit"
DOI: 10.6084/m9.figshare.24988335.v1
title: Daily SPEI dataset in China from 1980 to 2100

description: The daily Standardized Precipitation Evapotranspiration Index (SPEI) dataset used the PM-CO2 model to calculate PET is with a spatial resolution of 0.5° × 0.5° from 1980 to 2100. This dataset investigates drought, focusing on the region of China, using simulations from five global climate models (GCMs) under three Shared Socioeconomic Pathways (SSP1-2.6, SSP3-7.0, and SSP5-8.5）participating in the Inter-Sectoral Impact Model Intercomparison Project (ISIMIP3b).
DOI: 10.6084/m9.figshare.26030566.v1
title: Alcohol Health Literacy Questionnaire

description: Survey questionnaire; developed for the purpose of this study. Four sections: (1) alcohol consumption (based on the AUDIT-C, Lübecker translation), (2) alcohol health literacy, (3) general health literacy (based on HLS-EU-Q6), and (4) sociodemographics.
DOI: 10.6084/m9.figshare.26104933.v1
title: Genome assembly and annotation files for Passiflora foetida

description: Genome assembly and annotation files for <i>Passiflora foetida</i>, related to the article: Multi-integrated genomic data for <i>Passiflora foetida</i> provides insights into genome size evolution and floral development in <i>Passiflora</i> (https://doi.org/10.1186/s43897-023-00076-x)
DOI: 10.6084/m9.figshare.27283464.v1
title: Supplementary Data 3. <b>Comparisons of George Fife Angas’s Investments, Possible Agent’s Fees in the Slave-Compensation Process, and Selected Charitable Donations. </b>For the article ‘George Fife Angas, Questions of Slave Compensation in “Honduras” (Belize), and the Colonisation of South Australia: New Perspectives From Primary Sources’, <i>Australian Historical Studies.</i>

description: <b>Comparisons of George Fife Angas’s Investments, Possible Agent’s Fees in the Slave-Compensation Process, and Selected Charitable Donations</b>
DOI: 10.6084/m9.figshare.7582235.v1
title: Characteristics of trunk and lower limb alignment at maximum reach during the Star Excursion Balance Test in subjects with increased knee valgus during jump landing

description: The results of knee, trunk, and hip angles of each subject in all reach directions during Star Excursion Balance Test.
DOI: 10.6084/m9.figshare.12410339.v1
title: CT scan data of Oculudentavis

description: By reanalysing the original computed tomography scan data of <i>Oculudentavis, </i>we found that morphological evidences were highly contradict the avian or even
archosaurian phylogenetic placement of <i>Oculudentavis</i>. In contrast, our
analysis revealed multiple synapomorphies of the Squamata in this taxon, including
pleurodont marginal teeth and an open infratemporal fenestra, which suggests a
squamate rather than avian or dinosaurian affinity of <i>Oculudentavis</i><i>.</i>