cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.77edzh
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pteris manniana Mett. ex Kuhn"
 ]
}

 The dataset includes 27 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089413-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s5xs64
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Restio bolusii Pillans"
 ]
}

 The dataset includes 51 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089412-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgf4rx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex L.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089415-240321170329656/datasets/export for details.
DOI: 10.15468/dl.3txamq
title: Occurrence Download

description: A dataset containing 204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parthenocissus dalzielii Gagnep.",
 "Country is China",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true"
 ]
}

 The dataset includes 204 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089414-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cy2ymv
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Punica protopunica Balf.fil."
 ]
}

 The dataset includes 86 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089416-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ehdbgy
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ranunculus linkolae (Markl.) Ericsson"
 ]
}

 The dataset includes 58 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089418-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3b9vv4
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psychotria goodii Figueiredo"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089420-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fbsjn8
title: Occurrence Download

description: A dataset containing 454 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "TaxonKey is Morus nigra L."
 ]
}

 The dataset includes 454 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089417-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ahxbk9
title: Occurrence Download

description: A dataset containing 6537 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pyrola japonica Klenze ex Alef."
 ]
}

 The dataset includes 6537 records from 142 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089419-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tffc4v
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Restio brachiatus (Mast.) Pillans"
 ]
}

 The dataset includes 102 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089422-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2w764a
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex stenophylla Wahlenb.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089423-240321170329656/datasets/export for details.
DOI: 10.15468/dl.bn2hwj
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pteris marquesensis Lorence & K.R.Wood"
 ]
}

 The dataset includes 33 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089421-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.esuwpc
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pupalia grandiflora Peter"
 ]
}

 The dataset includes 57 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089425-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r2s63e
title: Occurrence Download

description: A dataset containing 228 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Prunus triloba Lindl."
 ]
}

 The dataset includes 228 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089424-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sn66m2
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psychotria gossweileri E.M.A.Petit"
 ]
}

 The dataset includes 69 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089426-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2bsued
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ranunculus lipsiensis Dunkel"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089427-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.td4etw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex subspathacea Wormsk. ex Hornem.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089428-240321170329656/datasets/export for details.
DOI: 10.15468/dl.vq8y9h
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pteris mawsmaiensis Fraser-Jenk. & Benniamin"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089431-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v3m7xj
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Restio brunneus Pillans"
 ]
}

 The dataset includes 24 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089429-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2nzxqv
title: Occurrence Download

description: A dataset containing 3187 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pupalia lappacea (L.) A.Juss."
 ]
}

 The dataset includes 3187 records from 166 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089430-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.21275968
title: Additional file 6 of Bioinformatics analysis of diagnostic biomarkers for Alzheimer's disease in peripheral blood based on sex differences and support vector machine algorithm

description: Additional file 6: Supplementary Data 6. GSEA in females.
DOI: 10.6084/m9.figshare.21275950
title: Additional file 10 of Bioinformatics analysis of diagnostic biomarkers for Alzheimer's disease in peripheral blood based on sex differences and support vector machine algorithm

description: Additional file 10: Supplementary Data 10. A statistical analysis of immune checkpoint genes and 13 hub genes.
DOI: 10.6084/m9.figshare.21275953
title: Additional file 1 of Bioinformatics analysis of diagnostic biomarkers for Alzheimer's disease in peripheral blood based on sex differences and support vector machine algorithm

description: Additional file 1: Supplementary Data 1. List of DEGs in females.
DOI: 10.6084/m9.figshare.21275957.v1
title: Additional file 3 of Changes in concentrations of cervicovaginal immune mediators across the menstrual cycle: a systematic review and meta-analysis of individual patient data

description: Additional file 3. Code and data. IPD from co-authors who agreed to share it, results of all analyses presented in the paper, and R code files necessary to reproduce the analysis and figures.
DOI: 10.6084/m9.figshare.21275957
title: Additional file 3 of Changes in concentrations of cervicovaginal immune mediators across the menstrual cycle: a systematic review and meta-analysis of individual patient data

description: Additional file 3. Code and data. IPD from co-authors who agreed to share it, results of all analyses presented in the paper, and R code files necessary to reproduce the analysis and figures.
DOI: 10.6084/m9.figshare.24270198
title: The delayed demographic responses of small mammals to habitat quality and density in the Brazilian Cerrado

description: Understanding the effects of exogenous and endogenous factors on species demographic rates is crucial to investigate their chances of persistence on natural ecosystems. We used a 9-year time series, based on monthly captures, to test the delayed effects of endogenous (density) and exogenous (rainfall, habitat cover/heterogeneity, fire) factors on the survival and recruitment rates of two small mammals inhabiting the Brazilian Cerrado: the semelparous, scansorial marsupial <i>Gracilinanus agilis</i> and the iteroparous, arboreal rodent <i>Rhipidomys macrurus</i>. As in most short-lived small mammals, we found negative density-dependent effects on the recruitment of both species (3 months delay), which could occur through reduced immigration or fecundity, in addition to the semelparous breeding strategy of <i>G. agilis</i>. Reduced habitat cover following fire events had a negative delayed effect on the survival of <i>G. agilis</i> (3 months after) and <i>R. macrurus</i> (1 year after), albeit it increased the recruitment rates (1-year lagged effect) of <i>R. macrurus</i>. We failed to find any effect of fire on demography of either species. Our results suggest that the irregular and non-cyclical fluctuations in <i>R. macrurus</i> abundance were driven by the interaction between delayed density dependence and changes in habitat quality, while the marked and repeated fluctuations in <i>G. agilis</i> abundance were mainly shaped by the occurrence of semelparity associated with direct density dependence. We emphasize that changes in habitat quality brought by human-made activities may have severe impacts on the dynamics and persistence of forest-dependent small mammals in the Cerrado.
DOI: 10.6084/m9.figshare.24270198.v1
title: The delayed demographic responses of small mammals to habitat quality and density in the Brazilian Cerrado

description: Understanding the effects of exogenous and endogenous factors on species demographic rates is crucial to investigate their chances of persistence on natural ecosystems. We used a 9-year time series, based on monthly captures, to test the delayed effects of endogenous (density) and exogenous (rainfall, habitat cover/heterogeneity, fire) factors on the survival and recruitment rates of two small mammals inhabiting the Brazilian Cerrado: the semelparous, scansorial marsupial <i>Gracilinanus agilis</i> and the iteroparous, arboreal rodent <i>Rhipidomys macrurus</i>. As in most short-lived small mammals, we found negative density-dependent effects on the recruitment of both species (3 months delay), which could occur through reduced immigration or fecundity, in addition to the semelparous breeding strategy of <i>G. agilis</i>. Reduced habitat cover following fire events had a negative delayed effect on the survival of <i>G. agilis</i> (3 months after) and <i>R. macrurus</i> (1 year after), albeit it increased the recruitment rates (1-year lagged effect) of <i>R. macrurus</i>. We failed to find any effect of fire on demography of either species. Our results suggest that the irregular and non-cyclical fluctuations in <i>R. macrurus</i> abundance were driven by the interaction between delayed density dependence and changes in habitat quality, while the marked and repeated fluctuations in <i>G. agilis</i> abundance were mainly shaped by the occurrence of semelparity associated with direct density dependence. We emphasize that changes in habitat quality brought by human-made activities may have severe impacts on the dynamics and persistence of forest-dependent small mammals in the Cerrado.
DOI: 10.6084/m9.figshare.16557348
title: Additional file 2 of A transcriptome-wide association study of Alzheimer’s disease using prediction models of relevant tissues identifies novel candidate susceptibility genes

description: Additional file 2: Table S2. Full results of TWAS for AD risk across ten brain tissues.
DOI: 10.6084/m9.figshare.17084195.v1
title: Additional file 14 of Genome-wide investigation of the AP2/ERF gene family in ginger: evolution and expression profiling during development and abiotic stresses

description: Additional file 14: Table S8. Expression profile of ZoAP2/ERF family genes response to abiotic stress treatment.
DOI: 10.6084/m9.figshare.17084249.v1
title: Additional file 6 of Genome-wide investigation of the AP2/ERF gene family in ginger: evolution and expression profiling during development and abiotic stresses

description: Additional file 6: Table S3. GO annotation of ZoAP2/ERF.
DOI: 10.6084/m9.figshare.17084255.v1
title: Additional file 7 of Genome-wide investigation of the AP2/ERF gene family in ginger: evolution and expression profiling during development and abiotic stresses

description: Additional file 7: Table S4. List of the tandem repeat gene pairs of AP2ERF in ginger.
DOI: 10.6084/m9.figshare.17084228
title: Additional file 2 of Genome-wide investigation of the AP2/ERF gene family in ginger: evolution and expression profiling during development and abiotic stresses

description: Additional file 2: Table S1. List of the 163 ZoAP2ERF genes identified in this study.
DOI: 10.6084/m9.figshare.17084186
title: Additional file 12 of Genome-wide investigation of the AP2/ERF gene family in ginger: evolution and expression profiling during development and abiotic stresses

description: Additional file 12: Table S6. Ka/Ks ratio.
DOI: 10.6084/m9.figshare.17084249
title: Additional file 6 of Genome-wide investigation of the AP2/ERF gene family in ginger: evolution and expression profiling during development and abiotic stresses

description: Additional file 6: Table S3. GO annotation of ZoAP2/ERF.
DOI: 10.6084/m9.figshare.17084189
title: Additional file 13 of Genome-wide investigation of the AP2/ERF gene family in ginger: evolution and expression profiling during development and abiotic stresses

description: Additional file 13: Table S7. Expression profile of ZoAP2/ERF family genes in different tissues.
DOI: 10.6084/m9.figshare.17084189.v1
title: Additional file 13 of Genome-wide investigation of the AP2/ERF gene family in ginger: evolution and expression profiling during development and abiotic stresses

description: Additional file 13: Table S7. Expression profile of ZoAP2/ERF family genes in different tissues.
DOI: 10.6084/m9.figshare.14462800
title: Additional file 4 of AFLAP: assembly-free linkage analysis pipeline using k-mers from genome sequencing data

description: Additional file 4: Table S2. High identity B. lactucae progeny isolates identified in Fig. 5c.
DOI: 10.6084/m9.figshare.17084213.v1
title: Additional file 17 of Genome-wide investigation of the AP2/ERF gene family in ginger: evolution and expression profiling during development and abiotic stresses

description: Additional file 17: Figure S9. The primer sequences for qRT-PCR used in this study.
DOI: 10.6084/m9.figshare.21275953.v1
title: Additional file 1 of Bioinformatics analysis of diagnostic biomarkers for Alzheimer's disease in peripheral blood based on sex differences and support vector machine algorithm

description: Additional file 1: Supplementary Data 1. List of DEGs in females.
DOI: 10.6084/m9.figshare.21802839
title: The nucleoprotein of influenza A virus inhibits the innate immune response by inducing mitophagy

description: Mitophagy is a form of autophagy that plays a key role in maintaining the homeostasis of functional mitochondria in the cell. Viruses have evolved various strategies to manipulate mitophagy to escape host immune responses and promote virus replication. In this study, the nucleoprotein (NP) of H1N1 virus (PR8 strain) was identified as a regulator of mitophagy. We revealed that NP-mediated mitophagy leads to the degradation of the mitochondria-anchored protein MAVS, thereby blocking MAVS-mediated antiviral signaling and promoting virus replication. The NP-mediated mitophagy is dependent on the interaction of NP with MAVS and the cargo receptor TOLLIP. Moreover, Y313 of NP is a key residue for the MAVS-NP interaction and NP-mediated mitophagy. The NP<sup>Y313F</sup> mutation significantly attenuates the virus-induced mitophagy and the virus replication <i>in vitro</i> and <i>in vivo</i>. Taken together, our findings uncover a novel mechanism by which the NP of influenza virus induces mitophagy to attenuate innate immunity. <b>Abbreviations:</b> ACTB: actin beta; ATG7: autophagy related 7; ATG12: autophagy related 12; CCCP: carbonyl cyanide 3-chlorophenyl hydrazone; co-IP: co-immunoprecipitation; COX4/COXIV: cytochrome c oxidase subunit 4; DAPI: 4ʹ,6-diamidino-2-phenylindole, dihydrochloride; EID<sub>50</sub>: 50% egg infective dose; GAPDH: glyceraldehyde-3-phosphate dehydrogenase; GFP: green fluorescent protein; HEK: human embryonic kidney; hpi: hours post-infection; IAV: influenza A virus; IFN: interferon; IP: immunoprecipitation; LAMP1: lysosomal associated membrane protein 1; MAP1LC3/LC3: microtubule associated protein 1 light chain 3; MAVS: mitochondrial antiviral signaling protein; Mdivi-1: mitochondrial division inhibitor 1; MLD<sub>50</sub>: 50% mouse lethal dose; MOI: multiplicity of infection; NBR1: NBR1 autophagy cargo receptor; NP: nucleoprotein; PB1: basic polymerase 1; RFP: red fluorescent protein; RIGI: RNA sensor RIG-I; RIGI-N: RIGI-CARD; SeV: Sendai virus; SQSTM1/p62: sequestosome 1; TIMM23: translocase of inner mitochondrial membrane 23; TOLLIP: toll interacting protein; TOMM20: translocase of outer mitochondrial membrane 20; TUBA: tubulin alpha; Vec: empty vector; vRNP: viral ribonucleoprotein.
DOI: 10.6084/m9.figshare.21275962
title: Additional file 4 of Bioinformatics analysis of diagnostic biomarkers for Alzheimer's disease in peripheral blood based on sex differences and support vector machine algorithm

description: Additional file 4: Supplementary Data 4. Significantly enriched GO entries and KEGG pathways in females.
DOI: 10.6084/m9.figshare.21802839.v1
title: The nucleoprotein of influenza A virus inhibits the innate immune response by inducing mitophagy

description: Mitophagy is a form of autophagy that plays a key role in maintaining the homeostasis of functional mitochondria in the cell. Viruses have evolved various strategies to manipulate mitophagy to escape host immune responses and promote virus replication. In this study, the nucleoprotein (NP) of H1N1 virus (PR8 strain) was identified as a regulator of mitophagy. We revealed that NP-mediated mitophagy leads to the degradation of the mitochondria-anchored protein MAVS, thereby blocking MAVS-mediated antiviral signaling and promoting virus replication. The NP-mediated mitophagy is dependent on the interaction of NP with MAVS and the cargo receptor TOLLIP. Moreover, Y313 of NP is a key residue for the MAVS-NP interaction and NP-mediated mitophagy. The NP<sup>Y313F</sup> mutation significantly attenuates the virus-induced mitophagy and the virus replication <i>in vitro</i> and <i>in vivo</i>. Taken together, our findings uncover a novel mechanism by which the NP of influenza virus induces mitophagy to attenuate innate immunity. <b>Abbreviations:</b> ACTB: actin beta; ATG7: autophagy related 7; ATG12: autophagy related 12; CCCP: carbonyl cyanide 3-chlorophenyl hydrazone; co-IP: co-immunoprecipitation; COX4/COXIV: cytochrome c oxidase subunit 4; DAPI: 4ʹ,6-diamidino-2-phenylindole, dihydrochloride; EID<sub>50</sub>: 50% egg infective dose; GAPDH: glyceraldehyde-3-phosphate dehydrogenase; GFP: green fluorescent protein; HEK: human embryonic kidney; hpi: hours post-infection; IAV: influenza A virus; IFN: interferon; IP: immunoprecipitation; LAMP1: lysosomal associated membrane protein 1; MAP1LC3/LC3: microtubule associated protein 1 light chain 3; MAVS: mitochondrial antiviral signaling protein; Mdivi-1: mitochondrial division inhibitor 1; MLD<sub>50</sub>: 50% mouse lethal dose; MOI: multiplicity of infection; NBR1: NBR1 autophagy cargo receptor; NP: nucleoprotein; PB1: basic polymerase 1; RFP: red fluorescent protein; RIGI: RNA sensor RIG-I; RIGI-N: RIGI-CARD; SeV: Sendai virus; SQSTM1/p62: sequestosome 1; TIMM23: translocase of inner mitochondrial membrane 23; TOLLIP: toll interacting protein; TOMM20: translocase of outer mitochondrial membrane 20; TUBA: tubulin alpha; Vec: empty vector; vRNP: viral ribonucleoprotein.