cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11807022
title: Postcranial anatomy and osteoderm histology of <i>Riojasuchus tenuisceps</i> and a phylogenetic update on Ornithosuchidae (Archosauria, Pseudosuchia)

description: Ornithosuchidae is a group of terrestrial quadrupedal pseudosuchian archosaurs from the Late Triassic of South America and Europe. <i>Riojasuchus tenuisceps</i> is arguably one of the best representative species of this clade because it comprises very well-preserved three-dimensional, almost complete skeletons. However, <i>R. tenuisceps</i> was originally described 50 years ago and compared then only with <i>Ornithosuchus woodwardi</i> and their affinities were discussed in detail. Here, we provide a detailed description of the postcranial skeleton of <i>R. tenuisceps</i>, which exhibits several remarkable features within pseudosuchians. When a wide spectrum of pseudosuchian archosaurs are considered, the alleged character that linked ornithosuchids with dinosaurs resulted in convergences and some were registered in other pseudosuchian groups as well. <i>Riojasuchus tenuisceps</i> also provided crucial information about the ‘crocodile-reversed’ tarsus, which is a unique feature of ornithosuchids, but it is not completely preserved in <i>O. woodwardi</i> and it is unknown in <i>Venaticosuchus rusconii</i>. In addition, the first histological analysis of cervical and dorsal osteoderms of <i>R. tenuisceps</i> was carried out as well, in order to test the utility of these structures as skeletochronological tools. Finally, the phylogenetic context of Ornithosuchidae is discussed based on the latest phylogenetic studies, which show a close affinity with Erpetosuchidae.
DOI: 10.6084/m9.figshare.11807022.v1
title: Postcranial anatomy and osteoderm histology of <i>Riojasuchus tenuisceps</i> and a phylogenetic update on Ornithosuchidae (Archosauria, Pseudosuchia)

description: Ornithosuchidae is a group of terrestrial quadrupedal pseudosuchian archosaurs from the Late Triassic of South America and Europe. <i>Riojasuchus tenuisceps</i> is arguably one of the best representative species of this clade because it comprises very well-preserved three-dimensional, almost complete skeletons. However, <i>R. tenuisceps</i> was originally described 50 years ago and compared then only with <i>Ornithosuchus woodwardi</i> and their affinities were discussed in detail. Here, we provide a detailed description of the postcranial skeleton of <i>R. tenuisceps</i>, which exhibits several remarkable features within pseudosuchians. When a wide spectrum of pseudosuchian archosaurs are considered, the alleged character that linked ornithosuchids with dinosaurs resulted in convergences and some were registered in other pseudosuchian groups as well. <i>Riojasuchus tenuisceps</i> also provided crucial information about the ‘crocodile-reversed’ tarsus, which is a unique feature of ornithosuchids, but it is not completely preserved in <i>O. woodwardi</i> and it is unknown in <i>Venaticosuchus rusconii</i>. In addition, the first histological analysis of cervical and dorsal osteoderms of <i>R. tenuisceps</i> was carried out as well, in order to test the utility of these structures as skeletochronological tools. Finally, the phylogenetic context of Ornithosuchidae is discussed based on the latest phylogenetic studies, which show a close affinity with Erpetosuchidae.
DOI: 10.6084/m9.figshare.11807046.v2
title: CTD_NSCS.zip

description: CTD data observed in the northern South China Sea
DOI: 10.6084/m9.figshare.11807046.v1
title: CTD_NSCS.zip

description: CTD data observed in the northern South China Sea
DOI: 10.21954/ou.rd.11806977
title: Comparisons

description: Research data for the thesis: Voronov, Danila (2020): Evolution of a gene regulatory network controlling gut patterning: comparing upstream control and chromatin organization around xlox/pdx1 and cdx genes in sea urchin, sea star and amphioxus<br><b></b><i></i><sub></sub><sup></sup><br><br><br><br>
DOI: 10.21954/ou.rd.11806977.v1
title: Comparisons

description: Research data for the thesis: Voronov, Danila (2020): Evolution of a gene regulatory network controlling gut patterning: comparing upstream control and chromatin organization around xlox/pdx1 and cdx genes in sea urchin, sea star and amphioxus<br><b></b><i></i><sub></sub><sup></sup><br><br><br><br>
DOI: 10.21954/ou.rd.11806935
title: Branchiostoma lanceolatum

description: <pre>Research data for the thesis: Voronov, Danila (2020): Evolution of a gene regulatory network controlling gut patterning: comparing upstream control and chromatin organization around xlox/pdx1 and cdx genes in sea urchin, sea star and amphioxus<br></pre><pre>These files represent data and results obtained during this thesis.<br></pre><pre>Bed files for B. lanceolatum are obtained from Dr Jose Luis Gómez-Skarmeta. <br></pre><pre>Genome sequence and annotation were obtained from the files associated with the B. lanceolatum genome publication (Marlétaz, F. et al., 2018. Amphioxus functional genomics and the origins of vertebrate gene regulation. Nature, 564(7734), pp.64–70.)</pre><pre>Genome fasta files and their respective annotations are attached to allow loading onto IGV or other browser. Sources of those files are stated in the thesis text body.</pre><pre><br></pre>
DOI: 10.21954/ou.rd.11806935.v1
title: Branchiostoma lanceolatum

description: <pre>Research data for the thesis: Voronov, Danila (2020): Evolution of a gene regulatory network controlling gut patterning: comparing upstream control and chromatin organization around xlox/pdx1 and cdx genes in sea urchin, sea star and amphioxus<br></pre><pre>These files represent data and results obtained during this thesis.<br></pre><pre>Bed files for B. lanceolatum are obtained from Dr Jose Luis Gómez-Skarmeta. <br></pre><pre>Genome sequence and annotation were obtained from the files associated with the B. lanceolatum genome publication (Marlétaz, F. et al., 2018. Amphioxus functional genomics and the origins of vertebrate gene regulation. Nature, 564(7734), pp.64–70.)</pre><pre>Genome fasta files and their respective annotations are attached to allow loading onto IGV or other browser. Sources of those files are stated in the thesis text body.</pre><pre><br></pre>
DOI: 10.6084/m9.figshare.11806572
title: Supplementary Material for: Dexamethasone Implant Migration through an Iris Coloboma

description: Ozurdex® 0.7 mg (dexamethasone 0.7 mg implant, Allergan, Dublin, Ireland), an intravitreal biodegradable implant, is indicated for cystoid macular edema due to various causes. One of its known and uncommon complications is implant migration to the anterior chamber, causing corneal edema that, in some cases, is irreversible. Reported risk factors for device migration are open or defective lens capsule and prior history of vitrectomy. We present a case of dexamethasone implant migration through a congenital iris coloboma in a pseudophakic patient with an intact lens capsule. The patient is a 56-year-old pseudophakic man with a history of congenital iris coloboma, myopia, retinal tears, and a branch retinal vein occlusion with subsequent cystoid macular edema resistant to anti-VEGF medications but responsive to corticosteroids. He presented with sudden painless decreased vision in his left eye, 8 weeks following dexamethasone implant (Ozurdex) injection to the same eye. Upon presentation, he was diagnosed with corneal edema caused by anterior chamber migration of the implant. He was referred for immediate surgical intervention to extract the implant, with a resolution of the corneal edema within 2 weeks postoperatively. To conclude, this is the first case that reports Ozurdex implant migration through an iris coloboma in the setting of an intact posterior capsule. In addition, we describe a novel surgical approach for implant removal from the anterior chamber that is simple and efficient.
DOI: 10.6084/m9.figshare.11806545
title: Supplementary Material for: Feasibility and Safety of Endoscopic Submucosal Dissection for Recurrent Rectal Lesions that after Transanal Endoscopic Microsurgery: A Case Series

description: <b><i>Objectives:</i></b> Recently, several studies have demonstrated the usefulness of endoscopic submucosal dissection (ESD) for residual or locally recurrent colorectal lesions after endoscopic treatment. However, the feasibility of ESD for recurrent rectal lesions after transanal endoscopic microsurgery (TEM) has not been fully investigated. In this study, we evaluated the feasibility and safety of ESD for recurrent rectal lesions after TEM. <b><i>Methods:</i></b> The treatment outcomes of 10 lesions in 9 patients, who underwent ESD between January 2006 and March 2018 for recurrent rectal lesions after transanal endoscopic microsurgery, were evaluated. <b><i>Results:</i></b> All lesions were successfully resected en bloc, and the R0 resection rate was 90%. The median size of the resected specimens and lesions (range) was 44 mm (21–70) and 27.5 mm (5–60), respectively. The pathological diagnoses included 4 adenomas and 6 cancerous lesions. The cancerous lesions included 5 cases of mucosal cancer and 1 case of superficial submucosal invasive cancer (depth of submucosal invasion &lt;1,000 μm from the muscularis mucosae). No adverse events occurred. There was no recurrence during the follow-up period. <b><i>Conclusions:</i></b> ESD for recurrent rectal lesions after TEM by expert’s hands appears to be safe and feasible.
DOI: 10.6084/m9.figshare.11806479
title: Direct evidence of light-absorbing carbonaceous aerosols transport

description: Individual particle analysis was used to capture the evidence for atmospheric pollutants transport through the trans-Himalayan valleys into the Tibetan Plateau
DOI: 10.6084/m9.figshare.11806254
title: Lethal and sub-lethal effects of nanosized titanium dioxide particles on <i>Hydropsyche exocellata</i> Dufour, 1841

description: Nanosized titanium dioxide particles (nTiO<sub>2</sub>) are one of the most widely used nanoscale engineered materials. Evidence of the presence of nTiO<sub>2</sub> in freshwater systems has been reported by recent ecotoxicological studies, which indicated the potential toxic effects of nTiO<sub>2</sub> to aquatic organisms. This study aimed at exploring lethal and sub-lethal endpoints of aqueous exposure of the aquatic insect <i>Hydropsyche exocellata</i> Dufour, 1841 (Trichoptera, Hydropsychidae) to nTiO<sub>2</sub> at different concentrations. Abdominal contractions significantly increased with nTiO<sub>2</sub> exposure. Levels of lipid peroxidation (LPO) increased with nTiO<sub>2</sub> dose, whereas the opposite was recorded for the antioxidant enzyme catalase activity (CAT). Moreover, the highest exposure (50.0 mg/L) resulted in the highest mortality (56% of mortality two weeks after pulse exposure to nTiO<sub>2</sub>). Overall, our results show that nTiO<sub>2</sub> has potential toxic effects on <i>H. exocellata</i> at concentrations of 50.0 mg/L.
DOI: 10.6084/m9.figshare.11806254.v1
title: Lethal and sub-lethal effects of nanosized titanium dioxide particles on <i>Hydropsyche exocellata</i> Dufour, 1841

description: Nanosized titanium dioxide particles (nTiO<sub>2</sub>) are one of the most widely used nanoscale engineered materials. Evidence of the presence of nTiO<sub>2</sub> in freshwater systems has been reported by recent ecotoxicological studies, which indicated the potential toxic effects of nTiO<sub>2</sub> to aquatic organisms. This study aimed at exploring lethal and sub-lethal endpoints of aqueous exposure of the aquatic insect <i>Hydropsyche exocellata</i> Dufour, 1841 (Trichoptera, Hydropsychidae) to nTiO<sub>2</sub> at different concentrations. Abdominal contractions significantly increased with nTiO<sub>2</sub> exposure. Levels of lipid peroxidation (LPO) increased with nTiO<sub>2</sub> dose, whereas the opposite was recorded for the antioxidant enzyme catalase activity (CAT). Moreover, the highest exposure (50.0 mg/L) resulted in the highest mortality (56% of mortality two weeks after pulse exposure to nTiO<sub>2</sub>). Overall, our results show that nTiO<sub>2</sub> has potential toxic effects on <i>H. exocellata</i> at concentrations of 50.0 mg/L.
DOI: 10.6084/m9.figshare.11806209
title: Synthesis, structures, and fluorescence of two lead(II) coordination polymers

description: Two novel Pb(II) coordination polymers: Pb(L)·H<sub>2</sub>O]<sub>n</sub> (I) and [Pb(L)·(4,4’-bipy)<sub>0.5</sub>]<sub>n</sub> (II) (H<sub>2</sub>L = N-3-pyridine sulfonyl amino succinic acid), were synthesized and characterized by FT-IR, elemental analysis, and single-crystal X-ray diffraction analysis. The results show that <b>I</b> crystallizes in orthorhombic system, <i>Pbca</i> space group, with <i>a</i> = 7.3492(7) Å, <i>b</i> = 15.4994(15) Å, <i>c</i> = 22.652(2) Å, <i>α</i>=<i>β = γ = </i>90°, <i>V</i> = 2580.3(4) Å<sup>3</sup>; The <b>II</b> crystallizes in monoclinic system, <i>P2<sub>1</sub>/n</i> space group, with <i>a</i> = 5.1885(7) Å, <i>b</i> = 19.7136(15) Å, <i>c</i> = 15.4593(11) Å, <i>α</i><i> = γ = </i>90°, <i>β</i> = 92.8330(10)°, <i>V</i> = 1579.3(3) Å<sup>3</sup>. Thermogravimetric analysis (TGA) indicated that <b>I</b> and <b>II</b> can maintain their structure at temperatures between 35∼234 °C and 35∼145 °C, respectively. The solid-state fluorescence of <b>I</b> and <b>II</b> showed that they had stronger fluorescence response than L. It can be seen that the introduction of ligands having aromatic rings can increase the fluorescence intensity of the polymer.
DOI: 10.6084/m9.figshare.11806209.v1
title: Synthesis, structures, and fluorescence of two lead(II) coordination polymers

description: Two novel Pb(II) coordination polymers: Pb(L)·H<sub>2</sub>O]<sub>n</sub> (I) and [Pb(L)·(4,4’-bipy)<sub>0.5</sub>]<sub>n</sub> (II) (H<sub>2</sub>L = N-3-pyridine sulfonyl amino succinic acid), were synthesized and characterized by FT-IR, elemental analysis, and single-crystal X-ray diffraction analysis. The results show that <b>I</b> crystallizes in orthorhombic system, <i>Pbca</i> space group, with <i>a</i> = 7.3492(7) Å, <i>b</i> = 15.4994(15) Å, <i>c</i> = 22.652(2) Å, <i>α</i>=<i>β = γ = </i>90°, <i>V</i> = 2580.3(4) Å<sup>3</sup>; The <b>II</b> crystallizes in monoclinic system, <i>P2<sub>1</sub>/n</i> space group, with <i>a</i> = 5.1885(7) Å, <i>b</i> = 19.7136(15) Å, <i>c</i> = 15.4593(11) Å, <i>α</i><i> = γ = </i>90°, <i>β</i> = 92.8330(10)°, <i>V</i> = 1579.3(3) Å<sup>3</sup>. Thermogravimetric analysis (TGA) indicated that <b>I</b> and <b>II</b> can maintain their structure at temperatures between 35∼234 °C and 35∼145 °C, respectively. The solid-state fluorescence of <b>I</b> and <b>II</b> showed that they had stronger fluorescence response than L. It can be seen that the introduction of ligands having aromatic rings can increase the fluorescence intensity of the polymer.
DOI: 10.6084/m9.figshare.11806179
title: Database of Neoproterozoic U-Pb geochronology and Hf isotopic data for the Adelaide Superbasin

description: This excel file contains all the relevant raw and processed zircon age data with an explanation of the formulas used, references and sample location data. <br><br>The paper interpreting this data is submitted to Precambrian Research.<br><br>Version 2 contains corrections to samples PR5 and PR6 that should have been Wilmington Formation and Bonney Sandstone respectively<br><br>Version 3 contains revisions to the formulas and the addition of some data (including Hf) from Keeman et al. 2020.<br>The information sheet has been further updated. <br><br>Version 4 contains a variant with values only and no active formulas for compatibility with older versions of Excel. A second variant with the formulas with further improved compatibility for 2019 excel is provided.<br>The data in V4 was used to generate all figures in Lloyd et al. 2020 (Precambrian Research, revisions submitted). RefID: 9 is new data published with this database and accompanying paper.<br><br>
DOI: 10.6084/m9.figshare.11806179.v1
title: Neoproterozoic geochronology and provenance of the Adelaide Rift Complex – a summary of knowledge (dataset)

description: This excel file contains all the relevant raw and processed zircon age data with an explanation of the formulas used, references and sample location data. <br>The paper using and describing this data is submitted to Precambrian Research. <br><br>
DOI: 10.6084/m9.figshare.11806164
title: An uncommon presentation of a cutaneous angiosarcoma

description: Cutaneous angiosarcoma (cAS) is a rare and aggressive malignant vascular tumor, which mostly occurs in the head and neck region. The outcome of cAS is poor and timely diagnosis is paramount, but often delayed because of the slow onset and the variance in presentation. This paper reports on a case of an 88-year old woman who presented with a persisting “hematoma” in the left retro-auricular region. Although considered at initial differential diagnosis, no signs of malignancy were identified in histopathology and imaging in the diagnostic work-up. At first, short-term follow-up showed no progression of the lesion. But 3 months after the first presentation additional biopsies were taken, because of rapid expansion of the lesion. The initial histopathological findings were most consistent with a benign vascular lesion, with signs of hemorrhage and reactive inflammation. However, the additional immunohistochemical analysis showed the presence of MYC oncoprotein, which confirmed the clinical suspicion of angiosarcoma. Because size and location of the lesion rendered complete resection unattainable, radiotherapy was commenced, but no significant volume reduction could be achieved. Therefore, palliative irradiation was initiated. The patient passed away 1 month later. Clinical diagnosis is often difficult and little is known about imaging of cAS. Histology and immunohistochemistry can be misleading, as cAS are easily mistaken for other lesions. Most studies report that multimodality treatment with surgery and radiotherapy is preferable, but this can be challenging in the head & neck region.
DOI: 10.6084/m9.figshare.11806179.v2
title: Neoproterozoic geochronology and provenance of the Adelaide Rift Complex – a summary of knowledge (dataset)

description: This excel file contains all the relevant raw and processed zircon age data with an explanation of the formulas used, references and sample location data. <br>The paper using and describing this data is submitted to Precambrian Research. <br><br>Version 2 contains corrections to samples PR 5 and PR 6 that should have been Wilmington Formation and Bonney Sandstone respectively<br>
DOI: 10.6084/m9.figshare.11806143
title: Metabolomic analyses of plasma and liver of mice fed with immature <i>Citrus tumida</i> peel

description: In this study, we investigated the effects of dietary supplementation of <i>Citrus tumida</i> hort. ex Tanaka on food intake, body and fat tissue weights, and metabolic profiles of plasma and liver in mice. Supplementation with 5% (w/w) of peels of immature <i>C. tumida</i> (PIC) for 4 weeks significantly suppressed body weight gain and decreased adipose tissue weight in epididymal, perirenal, and subcutaneous fats. Metabolome analyses showed that 2-hydroxyvaleric acid levels were reduced in the blood plasma of mice fed with PIC. PIC supplementation significantly elevated dipeptide (Thr-Asp, Ser-Glu, and Ala-Ala), glucuronic acid, and <i>S</i>-methylglutathione levels, and significantly reduced betaine aldehyde levels in the liver. In conclusion, PIC supplementation affects the metabolism of fatty acids, pectin, glutathione, and choline, showing potential beneficial effects for metabolic syndrome and obesity. PIC may be developed as a functional food and used in the treatment of these diseases. Peel of immature <i>C. tumida</i> supplementation impacts body weight followed by metabolic changes.
DOI: 10.6084/m9.figshare.11806164.v1
title: An uncommon presentation of a cutaneous angiosarcoma

description: Cutaneous angiosarcoma (cAS) is a rare and aggressive malignant vascular tumor, which mostly occurs in the head and neck region. The outcome of cAS is poor and timely diagnosis is paramount, but often delayed because of the slow onset and the variance in presentation. This paper reports on a case of an 88-year old woman who presented with a persisting “hematoma” in the left retro-auricular region. Although considered at initial differential diagnosis, no signs of malignancy were identified in histopathology and imaging in the diagnostic work-up. At first, short-term follow-up showed no progression of the lesion. But 3 months after the first presentation additional biopsies were taken, because of rapid expansion of the lesion. The initial histopathological findings were most consistent with a benign vascular lesion, with signs of hemorrhage and reactive inflammation. However, the additional immunohistochemical analysis showed the presence of MYC oncoprotein, which confirmed the clinical suspicion of angiosarcoma. Because size and location of the lesion rendered complete resection unattainable, radiotherapy was commenced, but no significant volume reduction could be achieved. Therefore, palliative irradiation was initiated. The patient passed away 1 month later. Clinical diagnosis is often difficult and little is known about imaging of cAS. Histology and immunohistochemistry can be misleading, as cAS are easily mistaken for other lesions. Most studies report that multimodality treatment with surgery and radiotherapy is preferable, but this can be challenging in the head & neck region.
DOI: 10.6084/m9.figshare.11806179.v4
title: Database of Neoproterozoic U-Pb geochronology and Hf isotopic data for the Adelaide Superbasin

description: This excel file contains all the relevant raw and processed zircon age data with an explanation of the formulas used, references and sample location data. <br><br>The paper interpreting this data is submitted to Precambrian Research.<br><br>Version 2 contains corrections to samples PR5 and PR6 that should have been Wilmington Formation and Bonney Sandstone respectively<br><br>Version 3 contains revisions to the formulas and the addition of some data (including Hf) from Keeman et al. 2020.<br>The information sheet has been further updated. <br><br>Version 4 contains a variant with values only and no active formulas for compatibility with older versions of Excel. A second variant with the formulas with further improved compatibility for 2019 excel is provided.<br>The data in V4 was used to generate all figures in Lloyd et al. 2020 (Precambrian Research, revisions submitted). RefID: 9 is new data published with this database and accompanying paper.<br><br>
DOI: 10.6084/m9.figshare.11806143.v1
title: Metabolomic analyses of plasma and liver of mice fed with immature <i>Citrus tumida</i> peel

description: In this study, we investigated the effects of dietary supplementation of <i>Citrus tumida</i> hort. ex Tanaka on food intake, body and fat tissue weights, and metabolic profiles of plasma and liver in mice. Supplementation with 5% (w/w) of peels of immature <i>C. tumida</i> (PIC) for 4 weeks significantly suppressed body weight gain and decreased adipose tissue weight in epididymal, perirenal, and subcutaneous fats. Metabolome analyses showed that 2-hydroxyvaleric acid levels were reduced in the blood plasma of mice fed with PIC. PIC supplementation significantly elevated dipeptide (Thr-Asp, Ser-Glu, and Ala-Ala), glucuronic acid, and <i>S</i>-methylglutathione levels, and significantly reduced betaine aldehyde levels in the liver. In conclusion, PIC supplementation affects the metabolism of fatty acids, pectin, glutathione, and choline, showing potential beneficial effects for metabolic syndrome and obesity. PIC may be developed as a functional food and used in the treatment of these diseases. Peel of immature <i>C. tumida</i> supplementation impacts body weight followed by metabolic changes.