cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.1r1j4
title: Data from: Drosophila pachea asymmetric lobes are part of a grasping device and stabilize one-sided mating

description: Background: Multiple animal species exhibit morphological asymmetries in
 male genitalia. In insects, left-right genital asymmetries evolved many
 times independently and have been proposed to appear in response to
 changes in mating position. However, little is known about the
 relationship between mating position and the interaction of male and
 female genitalia during mating, and functional analyses of asymmetric
 morphologies in genitalia are virtually non-existent. We investigated the
 relationship between mating position, asymmetric genital morphology and
 genital coupling in the fruit fly Drosophila pachea, in which males
 possess an asymmetric pair of external genital lobes and mate in an
 unusual right-sided position on top of the female. Results: We examined D.
 pachea copulation by video recording and by scanning electron microscopy
 of genital complexes. We observed that the interlocking of male and female
 genital organs in D. pachea is remarkably different from genital coupling
 in the well-studied D. melanogaster. In D. pachea, the female oviscapt
 valves are asymmetrically twisted during copulation. The male’s asymmetric
 lobes tightly grasp the female’s abdomen in an asymmetric ‘locking’
 position, with the left and right lobes contacting different female
 structures. The male anal plates, which grasp the female genitalia in D.
 melanogaster, do not contact the female in D. pachea. Experimental lobe
 amputation by micro-surgery and laser-ablation of lobe bristles led to
 aberrant coupling of genitalia and variable mating positions, in which the
 male was tilted towards the right side of the female. Conclusion: We
 describe, for the first time, how the mating position depends on coupling
 of male and female genitalia in a species with asymmetric genitalia and
 one-sided mating position. Our results show that D. pachea asymmetric
 epandrial lobes do not act as a compensatory mechanism for the change from
 symmetric to one-sided mating position that occurred during evolution of
 D. pachea’s ancestors, but as holding devices with distinct specialized
 functions on the left and right sides.
description: Rhebergen_BMC_2016The folder contains movies of /Drosophila pachea/ copulations, image exports from those movies and scanning electron microscopy images of /D. pachea/ copulation complexes. In addition, we provide three data files, with the measurements that were used to describe mating behavior, mating positions and SEM copulation complexes. The md5sum of Rhebergen_BMC_2016.tar.gz is: d0daef793b2bce7863a482f11bee92b6
DOI: 10.35079/hbm589.jddd.795
title: Visium (no probes) data from the uterus of a 30-year-old white female
DOI: 10.6084/m9.figshare.31151506
title: SUPERVISION DATA

description: THIS DATA SET IS FOR SUPERVISION OF POSTGRADUATE STUDENTS
DOI: 10.6084/m9.figshare.31151506.v1
title: SUPERVISION DATA

description: THIS DATA SET IS FOR SUPERVISION OF POSTGRADUATE STUDENTS
DOI: 10.5061/dryad.935vc
title: Data from: Large scale variation in the rate of germ-line de novo mutation, base composition, divergence and diversity in humans

description: It has long been suspected that the rate of mutation varies across the
 human genome at a large scale based on the divergence between humans and
 other species. However, it is now possible to directly investigate this
 question using the large number of de novo mutations (DNMs) that have been
 discovered in humans through the sequencing of trios. We investigate a
 number of questions pertaining to the distribution of mutations using more
 than 130,000 DNMs from three large datasets. We demonstrate that the
 amount and pattern of variation differs between datasets at the 1MB and
 100KB scales probably as a consequence of differences in sequencing
 technology and processing. In particular, datasets show different patterns
 of correlation to genomic variables such as replication time.
 Never-the-less there are many commonalities between datasets, which likely
 represent true patterns. We show that there is variation in the mutation
 rate at the 100KB, 1MB and 10MB scale that cannot be explained by
 variation at smaller scales, however the level of this variation is modest
 at large scales–at the 1MB scale we infer that ~90% of regions have a
 mutation rate within 50% of the mean. Different types of mutation show
 similar levels of variation and appear to vary in concert which suggests
 the pattern of mutation is relatively constant across the genome. We
 demonstrate that variation in the mutation rate does not generate
 large-scale variation in GC-content, and hence that mutation bias does not
 maintain the isochore structure of the human genome. We find that genomic
 features explain less than 40% of the explainable variance in the rate of
 DNM. As expected the rate of divergence between species is correlated to
 the rate of DNM. However, the correlations are weaker than expected if all
 the variation in divergence was due to variation in the mutation rate. We
 provide evidence that this is due the effect of biased gene conversion on
 the probability that a mutation will become fixed. In contrast to
 divergence, we find that most of the variation in diversity can be
 explained by variation in the mutation rate. Finally, we show that the
 correlation between divergence and DNM density declines as increasingly
 divergent species are considered.
description: Data and
 ScriptsData
 and scripts III.zip
DOI: 10.34740/kaggle/dsv/14630896
title: Dataset Objects Launched into Outer Space UNOOSA
DOI: 10.35079/hbm546.lxhc.794
title: Visium (no probes) data from the uterus of a 30-year-old white female
DOI: 10.5061/dryad.nf3t684
title: Data from: How does human motor cortex regulate vocal pitch in singers?

description: Vocal pitch is used as an important communicative device by humans, as
 found in the melodic dimension of both speech and song. Vocal pitch is
 determined by the degree of tension in the vocal folds of the larynx,
 which itself is influenced by complex and non-linear interactions among
 the laryngeal muscles. The relationship between these muscles and vocal
 pitch has been described by a mathematical model in the form of a set of
 “control rules”. We searched for the biological implementation of these
 control rules in the larynx motor cortex (LMC) of the human brain. We
 scanned choral singers with functional magnetic resonance imaging as they
 produced discrete pitches at four different levels across their vocal
 range. While the locations of the larynx motor activations varied across
 singers, the activation peaks for the four pitch-levels were highly
 consistent within each individual singer. This result was corroborated
 using multivoxel pattern analysis, which demonstrated an absence of
 patterned activations differentiating any pairing of pitch-levels. The
 complex and non-linear relationships between the multiple laryngeal
 muscles that control vocal pitch may obscure the neural encoding of vocal
 pitch in the brain.
description: Belyk_RSOS_opendata_c1Raw fMRI and skull-stripped structural MRI data for participant c1c1.zipBelyk_RSOS_opendata_c2Raw fMRI and skull-stripped structural MRI data for participant c2c2.zipBelyk_RSOS_opendata_c3Raw fMRI and structural MRI data for participant c3c3b.zipBelyk_RSOS_opendata_c4Raw fMRI and skull-stripped structural MRI data for participant c4c4.zipBelyk_RSOS_opendata_c5Raw fMRI and skull-stripped structural MRI data for participant c5c5.zipBelyk_RSOS_opendata_c6Raw fMRI and structural MRI data for participant c6c6.zipBelyk_RSOS_opendata_c10Raw fMRI and skull-stripped MRI data for participant c10c10.zipBelyk_RSOS_opendata_c11Raw fMRI and skull-stripped MRI data for participant c11c11.zipBelyk_RSOS_opendata_c12Raw fMRI and skull-stripped structural MRI data for participant c12c12.zipBelyk_RSOS_opendata_c13Raw fMRI and skull-stripped structural MRI data for participant c13c13.zipBelyk_RSOS_opendata_c14Raw fMRI and skull-stripped structural MRI data for participant c14c14.zipBelyk_RSOS_opendata_c15Raw fMRI and skull-stripped structural MRI data for participant c15c15.zipBelyk_RSOS_opendata_designExperimental design and timing information. Each subfolder contains the start times of experimental blocks for low, comfort, middle, and high pitch blocks, measured in acquisition volumes.design.zip
DOI: 10.5061/dryad.jh7h4
title: Data from: Genetic diversity in migratory bats: results from RADseq data for three tree bat species at an Ohio windfarm

description: Genetic analyses can identify the scale at which wildlife species are
 impacted by human activities, and provide demographic information useful
 for management. Here, we use thousands of nuclear DNA genetic loci to
 assess whether genetic structure occurs within Lasiurus cinereus (Hoary
 Bat), L. borealis (Red Bat), and Lasionycteris noctivagans (Silver-Haired
 Bat) bats found at a wind turbine site in Ohio, and to also estimate
 demographic parameters in each of these three groups. Our specific goals
 are to: 1) demonstrate the feasibility of isolating RADseq loci from these
 tree bat species, 2) test for genetic structure within each species,
 including any structure that may be associated with time (migration
 period), and 3) use coalescent-based modeling approaches to estimate
 genetically-effective population sizes and patterns of population size
 changes over evolutionary timescales. Thousands of loci were successfully
 genotyped for each species, demonstrating the value of RADseq for
 generating polymorphic loci for population genetic analyses in these bats.
 There was no evidence for genetic differentiation between groups of
 samples collected at different times throughout spring and fall migration,
 suggesting that individuals from each species found at the wind facility
 are from single panmictic populations. Estimates of present-day effective
 population sizes varied across species, but were consistently large, on
 the order of 105–106. All populations show evidence of expansions that
 date to the Pleistocene. These results, along with recent work also
 suggesting limited genetic structure in bats across North America, argue
 that additional biomarker systems such as stable-isotopes or trace
 elements should be investigated as alternative and/or complementary
 approaches to genetics for sourcing individuals collected at single wind
 farm sites.
description: L_borealis_sample_infoSample information for Lasiurus borealis samplesDHLSPdata.tarL_cinereus_sample_infoSample information for Lasiurus cinereus samplesL_noctivagans_sample_infoSample information for Lasionycteris noctivagans samplesRAD43_ATCACG_75.fastqRaw fastq data file containing sequence reads for L. borealis.RAD70_75.fastqRaw fastq data file containing sequence reads for L. cinereus.RAD53A_75.fastqRaw fastq data file containing sequence reads for L. cinereusRAD44.fastqRaw fastq data file containing sequence reads for L. noctivagans.RAD43_GATCAC_75_Part_1of2Raw fastq file containing sequence reads for L. borealis - (1 of 2). Original file was split into two files for upload to Dryad. Use 'cat' function to concatenate the two files before analyzing.RAD43_GATCAC_75_1of2.zipRAD43_GATCAC_75_2of2Raw fastq file containing sequence reads for L. borealis - (2 of 2). Original file was split into two files for upload to Dryad. Use 'cat' function to concatenate the two files before analyzing.
DOI: 10.35079/hbm747.dhrg.482
title: Visium (no probes) data from the uterus of a 30-year-old white female
DOI: 10.35079/hbm688.qjkb.873
title: Visium (no probes) data from the uterus of a 30-year-old white female
DOI: 10.5061/dryad.6fm1p
title: Data from: Sequence data for Clostridium autoethanogenum using three generations of sequencing technologies

description: During the past decade, DNA sequencing output has been mostly dominated by
 the second generation sequencing platforms which are characterized by low
 cost, high throughput and shorter read lengths for example, Illumina. The
 emergence and development of so called third generation sequencing
 platforms such as PacBio has permitted exceptionally long reads (over
 20 kb) to be generated. Due to read length increases, algorithm
 improvements and hybrid assembly approaches, the concept of one
 chromosome, one contig and automated finishing of microbial genomes is now
 a realistic and achievable task for many microbial laboratories. In this
 paper, we describe high quality sequence datasets which span three
 generations of sequencing technologies, containing six types of data from
 four NGS platforms and originating from a single microorganism,
 Clostridium autoethanogenum. The dataset reported here will be useful for
 the scientific community to evaluate upcoming NGS platforms, enabling
 comparison of existing and novel bioinformatics approaches and will
 encourage interest in the development of innovative experimental and
 computational methods for NGS data.
description: Sanger_Sequence_DataSanger sequence data for Clostridium autoethanogenum in standard chromatogram (AB1) format. Please unzip the data before use.Sanger_Data.zipMotif_GFF_FileThe motifs.gff file shows all of the sites in the genome sequence of Clostridium autoethanogenum that are methylated, all the sites with one of the discovered motifs and the overlap between the methylation and the motifs as detected by SMRT analysis software version 2.2. Please unzip the data before use.DSM10061_PacBio_DataRaw Pacific Biosciences DNA sequence data for the Clostridium autoethanogenum strain JA1-1 genome, as described earlier in Brown et al., Biotechnology for Biofuels 2014, 7:40 doi:10.1186/1754-6834-7-40 http://www.biotechnologyforbiofuels.com/content/7/1/40DSM10061_PacBio.tar.gz
DOI: 10.35079/hbm575.wxcd.259
title: Visium (no probes) data from the fallopian tube (right) of a 30-year-old white female
DOI: 10.15468/dl.vs2yrv
title: Occurrence Download

description: A dataset containing 25495586 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Passer domesticus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 25495586 records from 5140 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000389-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mgt5v2
title: Occurrence Download

description: A dataset containing 114 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex acetosella L.",
 "Country is Latvia"
 ]
}

 The dataset includes 114 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010342-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9dttsq
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Yanomamia Pellegrino, Brunes, Souza, Laguna, Avila-Pires, Hoogmoed & Rodrigues, 2018"
 ]
}

 The dataset includes 11 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014313-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12028524
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.6084/m9.figshare.29207501.v1
title: Dataset for "A Statistical and Simulation-Informed Model for Estimating Permeability from Pore Size Distribution in Saturated Geomaterials" by Liu and Seol 2025

description: This dataset is to support the paper named "A Statistical and Simulation-Informed Model for Estimating Permeability from Pore Size Distribution in Saturated Geomaterials" by Liu and Seol 2025.
DOI: 10.6084/m9.figshare.29207501
title: Dataset for "A Statistical and Simulation-Informed Model for Estimating Permeability from Pore Size Distribution in Saturated Geomaterials" by Liu and Seol 2025

description: This dataset is to support the paper named "A Statistical and Simulation-Informed Model for Estimating Permeability from Pore Size Distribution in Saturated Geomaterials" by Liu and Seol 2025.
DOI: 10.6084/m9.figshare.27244867
title: A Bayesian hybrid method for the analysis of generalized linear models with missing-not-at-random covariates

description: Missing data handling is one of the main problems in modelling, particularly if the missingness is of type missing-not-at-random (MNAR) where missingness occurs due to the actual value of the observation. The focus of the current article is generalized linear modelling of fully observed binary response variables depending on at least one MNAR covariate. For the traditional analysis of such models, an individual model for the probability of missingness is assumed and incorporated in the model framework. However, this probability model is untestable, as the missingness of MNAR data depend on their actual values that would have been observed otherwise. In this article, we consider creating a model space that consist of all possible and plausible models for probability of missingness and develop a hybrid method in which a reversible jump Markov chain Monte Carlo (RJMCMC) algorithm is combined with Bayesian Model Averaging (BMA). RJMCMC is adopted to obtain posterior estimates of model parameters as well as probability of each model in the model space. BMA is used to synthesize coefficient estimates from all models in the model space while accounting for model uncertainties. Through a validation study with a simulated data set and a real data application, the performance of the proposed methodology is found to be satisfactory in accuracy and efficiency of estimates.
DOI: 10.6084/m9.figshare.27244867.v1
title: A Bayesian hybrid method for the analysis of generalized linear models with missing-not-at-random covariates

description: Missing data handling is one of the main problems in modelling, particularly if the missingness is of type missing-not-at-random (MNAR) where missingness occurs due to the actual value of the observation. The focus of the current article is generalized linear modelling of fully observed binary response variables depending on at least one MNAR covariate. For the traditional analysis of such models, an individual model for the probability of missingness is assumed and incorporated in the model framework. However, this probability model is untestable, as the missingness of MNAR data depend on their actual values that would have been observed otherwise. In this article, we consider creating a model space that consist of all possible and plausible models for probability of missingness and develop a hybrid method in which a reversible jump Markov chain Monte Carlo (RJMCMC) algorithm is combined with Bayesian Model Averaging (BMA). RJMCMC is adopted to obtain posterior estimates of model parameters as well as probability of each model in the model space. BMA is used to synthesize coefficient estimates from all models in the model space while accounting for model uncertainties. Through a validation study with a simulated data set and a real data application, the performance of the proposed methodology is found to be satisfactory in accuracy and efficiency of estimates.
DOI: 10.5281/zenodo.15425334
title: GEOLAB - Transnational Access User Project: PILATUS: Piles under Lateral loading in Unsaturated Soils

description: Centrifuge testing to investigate piled foundation resilience under mechanical loads and groundwater oscillations in partially saturated soils.

Solar panel foundations are typically made of short driven steel piles, and the designing action is the lateral force exerted by the wind on the superstructure (i.e. the Solar Panel). Due to the reduced embedded length, these piles transmit the load from the superstructure to the surrounding soil which is often above the ground water table (GWT) and hence in partially saturated soil conditions. The PI.LAT.US project aims at investigating the interaction between solar panels pile foundations and partially saturated soils by providing high quality and well instrumented centrifuge tests results.

Technical info

In each centrifuge test, the foundations, including 6 single instrumented piles, are subjected to monotonic horizontal load at constant GWT level (3 piles) and to GWT oscillations under working load (3 piles). Model piles are closed-end aluminium tubes 18mm in outer diameter and 1.5mm thick, the embedment length is 180mm and the load is applied 54mm above the ground surface. Experiments are carried out at 15g using a homogeneous dense Hostun sand deposit, HN38, with a relative density of 75%.
DOI: 10.5281/zenodo.15425335
title: GEOLAB - Transnational Access User Project: PILATUS: Piles under Lateral loading in Unsaturated Soils

description: Centrifuge testing to investigate piled foundation resilience under mechanical loads and groundwater oscillations in partially saturated soils.

Solar panel foundations are typically made of short driven steel piles, and the designing action is the lateral force exerted by the wind on the superstructure (i.e. the Solar Panel). Due to the reduced embedded length, these piles transmit the load from the superstructure to the surrounding soil which is often above the ground water table (GWT) and hence in partially saturated soil conditions. The PI.LAT.US project aims at investigating the interaction between solar panels pile foundations and partially saturated soils by providing high quality and well instrumented centrifuge tests results.

Technical info

In each centrifuge test, the foundations, including 6 single instrumented piles, are subjected to monotonic horizontal load at constant GWT level (3 piles) and to GWT oscillations under working load (3 piles). Model piles are closed-end aluminium tubes 18mm in outer diameter and 1.5mm thick, the embedment length is 180mm and the load is applied 54mm above the ground surface. Experiments are carried out at 15g using a homogeneous dense Hostun sand deposit, HN38, with a relative density of 75%.
DOI: 10.15468/dl.nbnxv5
title: Occurrence Download

description: A dataset containing 826303 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Picea abies (L.) H.Karst.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 826303 records from 1498 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014311-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15539854
title: 2022-London-L0,L1,L2, 2023-L2, 2024-L2

description: University of Reading  Grimmond Urban Micromet Group (URGUMG)

City: London

Year: 2022 Data Levels: L0/L1/L2 Sites: HOP/MR/RGS/MR

MetOffice: Year: 2022, 2023, 2024: Data Levels:L2

City: Reading  - Year: 2022 - Data Levels: L0/L1/L2 Site: URAO
DOI: 10.5281/zenodo.15539855
title: 2022-London-L0,L1,L2, 2023-L2, 2024-L2

description: University of Reading  Grimmond Urban Micromet Group (URGUMG)

City: London

Year: 2022 Data Levels: L0/L1/L2 Sites: HOP/MR/RGS/MR

MetOffice: Year: 2022, 2023, 2024: Data Levels:L2

City: Reading  - Year: 2022 - Data Levels: L0/L1/L2 Site: URAO
DOI: 10.5281/zenodo.15570481
title: 2020 - London - L1#2, L2

description: University of Reading  Grimmond Urban Micromet Group

City: London

Year: 2020

Sites: multiple

Data Levels: L1#2

See also:
DOI: 10.5281/zenodo.15570482
title: 2020 - London - L1#2, L2

description: University of Reading  Grimmond Urban Micromet Group

City: London

Year: 2020

Sites: multiple

Data Levels: L1#2

See also:
DOI: 10.5281/zenodo.15569371
title: 2008 -London L1-KSK15S
DOI: 10.5281/zenodo.15569372
title: 2008 -London L1-KSK15S