cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17026/dans-zny-9w24
title: PROFILES registry: Quality of life Hodgkin lymphoma May 2009

description: The PROFILES registry offers scientific data in the area of medical psychology and more specific on quality of life of cancer survivors. The PROFILES registry is open to academics anywhere in the world for scientific purposes, free of charge. The archive can be found on the following website: http://www.profilesregistry.nlIn 2009 a questionnaire has been composed treating the subjects health-related quality of life, use of health care and satisfaction with care in patients who had been diagnosed with Hodgkin lymphoma.The questionnaire was submitted to 185 patients who were diagnosed with endometrial cancer between 1999 and 2008. 150 patients completed the questionnaire.Questionnaires used:- Fill in Date- General Questions- Work- Cancer and Care- Comorbidity- EORTC-QLQ-C30 (version 3)- EORTC-disease specific lymfoom (CLL)(in development)- EQ5D- DS14- B-IPQ- FAS- HADS- IOC1/IOC2/IOC1+items2- EORTC-INFO25 (used to be EORTC-INFO26)- Internet
DOI: 10.17026/dans-xst-9fw9
title: Interview met dr. B.E.C. Schreuder

description: Interview in het kader van promotieonderzoek (2012-2017) naar de omgang met door mensen en landbouwhuisdieren gedeelde infectieziekten ('zoönosen') in Nederland gedurende de twintigste eeuw, in het bijzonder met betrekking tot de casus BSE (1988-2001) in dat onderzoek. Het interview gaat niet alleen over Bovine Spongiforme Encefalopathie (BSE) / 'gekkekoeienziekte', maar ook over de professionele loopbaan van dr. Schreuder in het algemeen en zijn werk bij het Centraal Diergeneeskundig Instituut.
DOI: 10.17026/dans-zvr-zstq
title: AmsterdamUMCdb v1.0.1 (Will not be published)

description: This is the first freely accessible intensive care database from within the European Union. It contains de-identified health data related to tens of thousands of intensive care unit admissions, including demographics, vital signs, laboratory tests and medications.Further details are available from our webpage and GitHub through the links on this page.
DOI: 10.17026/dans-x4j-syxw
title: FLI and mortality MI

description: Raw data, incl. codebook that is necessary for reproducing results of the manuscript entitled Fatty Liver Index and mortality after myocardial infarction: A prospective analysis in the Alpha Omega Cohort.
DOI: 10.17026/dans-2aw-4pk5
title: University of Twente

description: This is a leaf Dry matter content data collected in the Schiermonnikoog wetland used for validation
DOI: 10.17026/dans-zvv-d2dr
title: Genetic variation of biological control relevant traits in natural enemies: a systematic review, supporting data

description: This is supplementary material for a systematic review tentatively titled, "Genetic variation of biological control relevant traits in natural enemies: a systematic review" (2019)Three tables are available, and are referenced in the following manner in text:Table S1: Positive control group for search results, based on papers that fit the ideal search returns for the search term.Table S2: Combined search return hits, in unedited format received from CAB Abstracts.Table S3: Articles narrowed down to BCA, with duplicates and unavailable papers removed, prior to assessment for estimation method and traits.
DOI: 10.17026/dans-zgp-m6s4
title: Detection of Japanese Encephalitis Virus in Culex mosquitoes in Singapore

description: Mosquito-borne flaviviruses are emerging pathogens of increasing global public health concern due to their rapid increase in geographical range, and the impact of climate change. Japanese Encephalitis virus (JEV) and West Nile virus (WNV) are of concern due to the risk of re-emergence and introduction by migratory birds. Human cases due to WNV have never been reported, and those of JEV are rare in Singapore. Four sentinel vector surveillance sites were established in Singapore to understand the potential risk posed by these viruses. The present study revealed active JEV transmission in Singapore through the detection of JEV genotype II inCulex tritaeniorhynchus collected from an avian sanctuary. ACulex flavivirus, similar to the Quang Binh virus isolated fromCulex tritaeniorhychus in Vietnam andCxFV-LSFlaviV-A20-09virus isolated in China, was also detected inCulex spp. (vishnui subgroup).No WNV was detected. This study demonstrates the important role that surveillance plays in public health, and confirms the circulation of JEV among wildlife in Singapore despite the absence of reported human cases. Surveillance, collaboration between public health and wildlife managers, and control of mosquito population remain the key measures in risk mitigation of JEV transmission in the enzootic cycle between birds and mosquitoes.
DOI: 10.17026/dans-28e-pa7z
title: ERASE screening instrument for elder abuse

description: A prospective study design to investigate the prevalence of elder abuse and the positive predictive value of ERASE (screening instrument).
DOI: 10.17026/dans-x9z-q233
title: Spatial and temporal heterogeneities of district-level typhoid morbidities in Ghana: A requisite insight for informed public health response.

description: This dataset contains the dataset used in the article: Spatial and temporal heterogeneities of district-level typhoid morbidities in Ghana: A requisite insight for informed public health response. PLoS ONE, 13(11).The dataset consist of a single shape file of type "SpatialPolygonsDataFrame"The attribute table consists of 63 columns for 216 districts.The column "district_ID" is the district IDThe column ""Region_ID" is the Region IDThe columns "pop" is the populationThe columns "2011_01_01" ,"2011_02_01",..., "2015_11_01" ,"2015_12_01" are the monthly cases from Jan 2010 (2011-01-01) to Dec 2015 (2015-12-01)
DOI: 10.17026/dans-xz4-jeb9
title: Monthly leaf area index generated using Sentinel-2 for Bavarian Forest National Park in 2019

description: Monthly Leaf Area Index (LAI) products with a 20-meter resolution were generated using Sentinel-2 data for 2019 over Bavarian Forest National Park, Germany, applying an enhanced vegetation index (EVI)-based model as an empirical approach. The LAI products were utilised as an input for estimating Net Primary Productivity using the LPJ-GUESS model as the deliverable for the EO4Diversity project funded by the European Space Agency (ESA).
DOI: 10.17026/dans-zpj-ff5m
title: A conserved role of the duplicated Masculinizer gene in sex determination of the Mediterranean flour moth, Ephestia kuehniella - Supplementary alignments

description: Identification and verification of a duplication of the Masculinizer (Masc) gene in the Mediterranean flour moth, Ephestia kuehniella. Supporting alignments containing splice variants of the genes, Masculinizer (EkMasc), MasculinizerB (EkMascB), and doublesex (Ekdsx) in E. kuehniella, and Masculinizer in Plodia interpunctella (PiMasc) and Cydia pomonella (CpMasc).
DOI: 10.17026/dans-xzc-46u4
title: R code for transcriptomics analysis of mpox virus infection in skin organoids

description: R code used for transcriptomics analysis of mpox virus infection in skin organoids
DOI: 10.17026/dans-xnh-9aha
title: Farm practices

description: Data from 100 households including dairy herd structure, feeding and farm management.
DOI: 10.17026/dans-zaa-e27r
title: Monthly leaf area index generated using Sentinel-2 for Europe, in 2018

description: Monthly Leaf Area Index (LAI) products with a 20-meter resolution were generated using Sentinel-2 data for 2018 at the European scale, applying an enhanced vegetation index (EVI)-based model as an empirical approach. Further, the LAI products were resampled to 1Km to be applied as an input for estimating Net Primary Productivity using the LPJ-GUESS model as the deliverable for the EO4Diversity project funded by the European Space Agency (ESA).
DOI: 10.17026/dans-zep-rfff
title: Assessing Habitat Suitability for Native and Alien Freshwater Mussels in the River Waal (the Netherlands), Using Hydroacoustics and Species Sensitivity Distributions

description: Dataset associated with a published article titled "Assessing Habitat Suitability for Native and Alien Freshwater Mussels in the River Waal (the Netherlands), Using Hydroacoustics and Species Sensitivity Distributions"Abstract:Longitudinal training dams (LTDs) in the river Waal are novel river training structures that protect the littoral zone from the adverse effects of navigation providing new habitats for riverine macroinvertebrates. In order to inform river management and to better understand their ecological value for native and alien mussel species, it is important to assess the habitat suitability of the protected LTD shore channels. We applied spatial hydroacoustics surveys consisting of side-scan sonar (SSS) and acoustic Doppler current profiler (ADCP) of the substrate type, water depth and flow velocity in three shore channels in combination with species sensitivity distributions (SSDs) to predict habitat suitability for native and alien mussel species. SSDs allowed for the prediction of habitat suitability as a potentially occurring fraction (POF) of a species pool. High substrate type, water depth, and near-bottom flow velocity POFs were found for???70%, 100%, and 4?51% of the total shore channel area, respectively, suggesting that shore channels provide suitable habitat for both native and alien mussel species. To enhance the shore channels as habitat for native mussel species, we recommend increasing shallow areas dominated by fine (silt/clay) and sand substrate types with low near-bottom flow velocities (near 0 m/s). In contrast, the total area of hard substrate (e.g., boulders) in the shore channels should be reduced as it strongly favored invasive alien mussel species in our study. Future research should include additional abiotic parameters to enhance the habitat suitability predictions and compare the results for different riverine habitats.The dataset includes raw side-scan sonar data (SideScanSonar folder), ADCP data (ADCP), images of sediment grab samples (Grab Samples folder; Photos) and raw GPS data of their location (Grab Samples folder; RawGPSGarmin).
DOI: 10.17026/dans-28e-eu2d
title: Changes in thermal infrared spectra of plants caused by temperature and water stress

description: This project investigates the response of plants to suboptimal conditions, by simulating some of the restrictions of plants in alpine ecosystems. Plants of Rhododendron cf. catawbiense were exposed to temperature and water stress for a period of 6 months and were compared to plants growing under normal conditions (control). Each treatment consisted of 15 plants, from which 5 leaves of each plant were marked and tracked along the experiment. TIR spectrum of each tracked leaf was measured at the beginning (0 months), in the middle (3 months) and at the end (6 months) of the experiment. Leaf traits were measured for 3 leaves of each plant (microscopy, morphology, and biochemistry).The treatments consisted in ambient temperature (20˚C), cold temperature (10 ˚C), well-watered soil – wet soil - (80% of the field capacity), and poor watered soil – dry soil - (20% of the field capacity).Code of the treatments:- Treatment 1 (T1): cold temperature / dry soil (CD)- Treatment 2 (T2): cold temperature / wet soil (CW)- Treatment 3 (T3): ambient temperature / wet soil (AW)- Treatment 4 (T4): ambient temperature / dry soil (AD)
DOI: 10.17026/dans-xd5-e2be
title: Salinization effects on freshwater macrophyte growth and establishment in coastal eutrophic agricultural ditches

description: The presence of submerged macrophytes is a desired environmental target for coastal freshwater ecosystems. Maintaining a rich community of these species can be challenging as salinization by sea-level rise poses an increasing threat to ecosystem integrity. We tested the effect of salinization on the growth and germination of freshwater macrophytes experimentally using field sediment. In a 56-day experiment, a macrophyte community was exposed to salinity treatments representing seasonal water management scenarios (a decreasing salinity from 1500 to 300 mg L-1 NaCl, a stable salinity of 300 mg L-1 NaCl, an increasing salinity from 300 to 1500 mg L-1 NaCl and a stable salinity of 1500 mg L-1 NaCl), crossed with treatments simulating periodic turbidity pulses. All species except Elodea nuttallii grew poorly on the saline and eutrophic sediment, reflecting the challenges of growth in eutrophic coastal systems. Surprisingly, the highest community biomass was achieved in the salinity scenario of 1500 mg L-1 NaCl. In a second experiment, field-collected sediments were incubated at 300 and 1500 mg L-1 NaCl salinity (representing summer and winter scenarios), and the germination capacity of the existing seedbank was quantified. Most germinated seedlings did not reach maturity irrespective of salinity treatment. This indicated that sediment salinity, rather than water column salinity, determined seedling establishment success. Interestingly, the established species were characteristic of freshwater habitats, thus indicating maladaptation of the seedbank. Our results show that a mismatch between the high salinity level of eutrophic sediment and the overlaying freshwater may hamper macrophyte growth. Furthermore, target species in coastal eutrophic freshwaters should be evaluated carefully. Elodea nuttalli, which has a wide tolerance range for nutrients and salinity, outperformed other macrophyte species in our study. Thus, species with similar traits may be most successful in establishing macrophyte stands in coastal eutropic wetlands.This depositited dataset contains the data and scripts underlying these results.
DOI: 10.17026/dans-zb8-c73a
title: Data of 'A Generalized Physiologically Based Kinetic Model for Fish for Environmental Risk Assessment of Pharmaceuticals'

description: In our paper ‘A Generalized Physiologically Based Kinetic Model for Fish for Environmental Risk Assessment of Pharmaceuticals’ (https://doi.org/10.1021/acs.est.1c08068), we developed a generalized PBK model, estimating required parameters as functions of fish and chemical properties. We assessed the model performance for five pharmaceuticals (covering neutral and ionic structures). With biotransformation half-lives (HLs) from EPI Suite, 73 and 41% of the time-course estimations were within a 10-fold and a 3-fold difference from measurements, respectively. The performance improved using experimental biotransformation HLs (87 and 59%, respectively). Estimations for ionizable substances were more accurate than any of the existing species-specific PBK models. The present study is the first to develop a generalized fish PBK model focusing on mechanism-based parameterization and explicitly accounting for ionization. Our generalized model facilitates its application across chemicals and species, improving efficiency for environmental risk assessment and supporting an animal-free toxicity testing paradigm.This dataset contains data on fish organ volume, fish cardiac output and measured concentrations of pharmaceuticals in respective organs of fish. Fish organ volume data were obtained from FishBase (https://www.fishbase.se/search.php) and literature. Fish cardiac output and measured concentration data were obtained through literature search.
DOI: 10.17026/dans-29f-vzcn
title: Data of 'Towards an ecosystem service-based method to quantify the filtration services of mussels under chemical exposure'

description: In our paper ‘Towards an ecosystem service-based method to quantify the filtration services of mussels under chemical exposure’ (https://doi.org/10.1016/j.scitotenv.2020.144196), we derived a methodology for quantifying the economic benefits of mussel filtration services in relation to chemical mixture exposure. To this end, we first applied the bootstrapping approach to quantify the filtration capacity of dreissenid mussels when exposed to metal mixtures in the Rhine and Meuse Rivers in the Netherlands. Subsequently, we applied the value transfer method to quantify the economic benefits of mussel filtration services to surface water-dependent drinking water companies. We estimated that dreissenid filtration services would save 110–12,000 euros/million m3 for drinking water production when abstracting raw water at the end of respective rivers. This study presents a novel methodology for quantifying the economic benefits of mussel filtration services associated with chemical pollution, which is understandable to policymakers. The derived approach could potentially serve as a blueprint for developing methods in examining the economic value of other filter-feeders exposed to other chemicals and environmental stressors.This dataset contains data on surface area and length of groynes for the Rhine and Meuse River in the Netherlands and metal exposure effects on dreissenid behaviours (filtration rate and valve closure). Data on surface area and length of groynes were retrieved from ecotope maps from Rijkswaterstaat (http://www.rijkswaterstaat.nl/). Data on metal exposure effects on dreissenid behaviours were obtained from the United States Environmental Protection Agency ECOTOX database.
DOI: 10.17026/dans-xpt-ra7g
title: Data of 'Towards a systematic method for assessing the impact of chemical pollution on ecosystem services of water systems'

description: In our paper ‘Towards a systematic method for assessing the impact of chemical pollution on ecosystem services of water systems’ (https://doi.org/10.1016/j.jenvman.2020.111873), we developed a stepwise approach to quantify the impact of sediment pollution on the total ecosystem service (ES) value provided by water systems. Thereby, we calculated the total ES value loss as a function of the multi-substance potentially affected fraction of species (msPAF). The function is a combination of relationships between, subsequently: the msPAF(HC50), diversity, productivity and total ES value. The combined relationships showed that 1% msPAF corresponded to on average 0.5% (0.05–1.40%) of total ES value loss. Our study presents a novel methodology to assess the impact of chemical exposure on diversity, productivity, and total value that ecosystems provide.This dataset contains experimental values of diversity and productivity in terrestrial ecosystems, which is a filtered and updated version of the datasets published in several meta-analyses (i.e., Cardinale et al. (2006); Balvanera et al. (2006); Daam et al. (2019); Duffy et al. (2017)).
DOI: 10.17026/dans-x8e-rv4w
title: Alpha-1 antitrypsin deficiency gut microbiome

description: This dataset contains 16S rRNA Illumina MiSeq sequenced samples used in our gut microbiome study in individuals with alpha-1 antitrypsin deficiency (AATD) and controls (non-AATD).
DOI: 10.17026/dans-xpc-d6qu
title: Scalabity of dairy feed advancing model: quantitative household data

description: Data from 226 households including detailed livestock holdings and the dairy enterprise in particular.
DOI: 10.17026/dans-27q-gpkb
title: Verwijzing naar de data van: Health behaviour in school-aged children - HBSC Nederland

description: HBSC-Nederland is een landelijk onderzoek naar gezondheid en welzijn van scholieren. Het maakt deel uit van het grote internationale onderzoek Health Behaviour in School-aged Children (HBSC), dat tot doel heeft een overzicht te geven van de leefsituatie en psychische gezondheid van scholieren van 11 tot en met 17 jaar. Het HBSC-Nederland wil ook sociale integratie, psychische gezondheid, risicogedrag en welbevinden van jongeren in Nederland in kaart brengen. De vaste HBSC-vragenlijst is daartoe uitgebreid met de Nederlandse versie van het Youth Self Report (ysr) een gevalideerde, internationaal geaccepteerde vragenlijst die inzage geeft in internaliserend en externaliserend probleemgedrag van tieners. Daarnaast zijn vragen over jeugdcultuur en maatschappelijke participatie opgenomen.HBSC-Nederland is een samenwerkingsverband tussen de Universiteit Utrecht, het Sociaal en Cultureel Planbureau en het Trimbos-insitituut.
DOI: 10.17026/dans-zwv-bjub
title: Interview met dr. J.E. van Steenbergen

description: Interview in het kader van promotieonderzoek (2012-2017) naar de omgang met door mensen en landbouwhuisdieren gedeelde infectieziekten ('zoönosen') in Nederland gedurende de twintigste eeuw, in het bijzonder met betrekking tot de casus BSE (1988-2001) in dat onderzoek. Het interview gaat niet alleen over Bovine Spongiforme Encefalopathie (BSE) / 'gekkekoeienziekte', maar ook over de Nederlandse organisatie van de infectieziektenbestrijding in de jaren 1990 en Van Steenbergens professionele loopbaan.
DOI: 10.17026/dans-x9q-kz3n
title: Newer long-acting insulin prescriptions for patients with type 2 diabetes: prevalence and practice variation in a retrospective cohort study

description: Newer long-acting insulins (insulin glargin 300 U/ml and insulin degludec) are not recommended for the treatment of patients with type 2 diabetes mellitus (T2DM) according to the Dutch guideline ‘NHG-Standaard diabetes mellitus type 2'. Although adherence to guidelines is generally high among Dutch GPs, the popularity of insulin glargine 300 U/ml and insulin degludec in Dutch practice is rapidly increasing. This study therefore aimed to identify practice variation in, and practice and patient characteristics associated with, the prescription of newer insulins to patients with T2DM in primary care, 3–5 years after their introduction.We performed a retrospective cohort study in Dutch general practices using data of the Nivel Primary Care Database. We found that a median percentage of 21.2% of all patients prescribed intermediate or long-acting insulins per practice received a prescription for newer insulins. The inter-practice variation in the prescription of newer insulins was large and could only be partially explained by patient- and practice-related differences. This indicates substantial opportunities for improvement.
DOI: 10.17026/dans-x52-g2qu
title: Evaluation of the acceptability in France of the vaccine against papillomavirus (HPV) among middle and high school students and their parents

description: Our study (HPVac) was a prospective, multicenter, departmental, and descriptive survey applied to a sample of male middle and high school students attending schools in the Loire-Atlantique department and their parents. It took place from January 2017 to January 2018.