cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4384339
title: A Lagrangian study of the contribution of the Canary coastal upwelling to the nitrogen budget of the open North Atlantic

description: The attached datasets constitute the particle trajectory data produced in the experiment for Hailegeorgis et al.. The "traj_upwell_1d_70m_1d-variables.nc" contains variables that describe different aspects of each upwelled particle (mostly regarding a particle's release or its initial or final conditions). The rest of the files with the format "traj_upwell_1d_70m_XXX-traj.nc" describe an attribute XXX (location or nutrient concentration) along the trajectory of upwelled particles tracked as part of the experiment. With ARIANE, particles are released and tracked in a ROMS simulation of the Canary coastal upwelling region. Out of the ~10M particles, the trajectories of the ~353K (~3.6%) that upwell are included. The variable "index_in_full_exp" in file "traj_upwell_1d_70m_1d-variables.nc" shows the index of each of these upwelling particles in the larger pool of released particles. For each upwelled particle, out of the 720-day trajectories starting from its release into the coast, the values from its upwelling step to its exit from the experiment are included, with the values outside this range being filled with a generic value (1.e20). An upwelled particle exits the experiment when it leaves the regional ROMS simulation altogether or when it leaves the coast and returns to the coast to re-upwell (more details in the paper). Be mindful of the different values of time. In "traj_upwell_1d_70m_1d-variables.nc", the variable "release_time" tells each particle's release time, in days since onset of the ROMS simulation, while variable "coast_exit_time" tells each particle's day of exiting coast, in days since its release. In each particle's trajectory (in traj_lon, traj_lat, etc), the first and last steps with valid values are the same as the days of its upwelling and its exit, respectively, since its release. The files contain the name and description of each variable. Along with the details in the publication, the descriptions here should be enough to fully interpret the information and replicate our analysis.
description: Support for this research has come from the Center for Prototype Climate Modeling (CPCM), the New York University Abu Dhabi (NYUAD) Research Institute. Computations were performed at the High Performance cluster (HPC) of NYUAD, Dalma. Nicolas Gruber acknowledges support by the Swiss National Science Foundation through the CALNEX project (Grant 149384) and by the Swiss Federal Institute of Technology Zurich (ETH Zurich). The authors are grateful to B. Blanke and N. Grima for making their ARIANE code available and to the NYUAD HPC team for technical support. The model code can be accessed online (http://www.romsagrif.org).
description: {"references": ["Hailegeorgis, D., Lachkar, Z., Rieper, C., and Gruber, N.: A Lagrangian study of the contribution of the Canary coastal upwelling to the nitrogen budget of the open North Atlantic, Biogeosciences, 18, 303\u2013325, https://doi.org/10.5194/bg-18-303-2021, 2021."]}
DOI: 10.17632/8xrvghrkbn.1
title: The Vehicle Routing Problem with Heterogeneous Locker Boxes (Instances)

description: Instances for the vehicle routing problem with heterogeneous locker boxes.
DOI: 10.5281/zenodo.2633838
title: cldf/clts: Cross-Linguistic Transcription Systems

description: Cross-Linguistic Transcription Systems
DOI: 10.5281/zenodo.6827794
title: Mean sea-level pressure and related indices from control and tropical relaxation winter seasonal hindcasts using the Met Office GloSea5 system.

description: © Crown Copyright, Met Office The accompanying data is made available under the terms of the Non-Commercial Government Licence (http://www.nationalarchives.gov.uk/doc/non-commercial-government-licence/version/2/). These data are the results of ensemble modelling simulations using the Met Office GloSea5 numerical seasonal prediction system. Files in (zipped) netcdf format contain winter seasonal-mean mean sea-level pressure (MSLP) fields for each member of specified ensemble and hindcast winter (December-February from 1993-94 to 2015-16). The files are named according to the specification of relaxation towards observational reanalysis in each. HCAST has no relaxation, ALL has tropical (approximately 22.5S to 22.5N) relaxation at all atmospheric heights, TROP is similar to ALL but with relaxation limited to below 18km and STRAT is similar to ALL but with relaxation limited to above 18km. The relaxation is designed to constrain the atmospheric state to be close to that which was observed within the domain over which it is applied. Details of the technique can be found in Maidens et al., 2021* and references therein. An additional text file is provided to give summary statistics of key MSLP-based winter indices. * Maidens, A., Knight, J. R., & Scaife, A. A. (2021). Tropical and stratospheric influences on winter atmospheric circulation patterns in the North Atlantic sector. Environmental Research Letters, 16, 024035. https://doi.org/10.1088/1748-9326/abd8aa
DOI: 10.6084/m9.figshare.7599293.v1
title: Motifs

description: # These files are used for motif scanning of DNA using fimo in the MEME suite (see relevant documentation) <br><br># 1. Species-specific motif IDs, orthogrouping and cichlid gene IDs (Mz - M. zebra; Pn - p. nyererei; Ab - A. burtoni; Nb - N. brichardi; On - O. niloticus)<br><br>merged_mat_qual_pvals_ALL.out1.TF.* # e.g. merged_mat_qual_pvals_ALL.out1.TF.ab <br><br><br># 2. MEME files of all motifs for motif scanning according to:<br># A) those derived from i) human-based and ii) mouse-based predictions based on orthology (see Methods); and<br># B) different confidence levels: 2a - cichlid-specific (CS) matrices; 2b - cichlid-wide (CW) matrices; and 2c - JASPAR matrices<br><br><br># Ai) Derived from Human<br>HumanDerived/2a_CS_*.meme<br>HumanDerived/2b_CW_*.meme<br>HumanDerived/2c_JASPAR_*.meme<br># all meta data on above motifs, including motifID, genesymbol, EnsemblID, orthoGroup, cichlid_geneIDs, collated Optimal p-values for scanning<br>HumanDerived/cichlid_allHs_motifs_meta_info.txt<br><br># Aii) Derived from Mouse<br>MouseDerived/2a_CS_*.meme<br>MouseDerived/2b_CW_*.meme<br>MouseDerived/2c_JASPAR_*.meme<br># all meta data on above motifs, including motifID, genesymbol, EnsemblID, orthoGroup, cichlid_geneIDs, collated Optimal p-values for scanning<br>MouseDerived/cichlid_allMm_motifs_meta_info.txt
DOI: 10.17189/1520653
title: LRO MOON MINI-RF 2/3/5 BISTATIC RADAR V3.0
DOI: 10.17632/f3y46d57yk.1
title: Wake Velocities and Pressure Fluctuations in the Bistable Flow Behind Two Cylinders

description: Data result from simultaneous measurements with two hot wires and two microphones in an aerodynamic channel with a rectangular cross section of 0.147 m x 0.193 m and acrylic walls to study the wake behavior after a pair of fixed cylinders. The two circular cylinders were made of commercial PVC tubes (Polyvinyl chloride) with a diameter of 25.1 mm, and a pitch-to-diameter ratio p/d = 1.26, resulting in a blockage ratio of 13%. The Reynolds numbers were Re = 1.06x104, Re = 2.16x104 and Re = 2.57x104, defined with the reference velocity (respectively: 10.05 m/s, 15,51 m/2 and 16.1 m/s) and the tube diameter. Reference velocity was measured by a Pitot tube at the test section entrance. The turbulence intensity at the test section was about 1%. Wake flow velocity was measured with a DANTEC StreamLine Constant Temperature Anemometer system with two DANTEC 55P11 probes aligned with the cylinders. Pressure fluctuation time series were measured using two 1/8” diameter condenser microphones (Brüel & Kjaer, Type 4138) flush-mounted with the channel walls in the wake region behind the cylinders. The microphones assembly includes pre-amplifier, conditioner, and an energy source. Data acquisition was performed by a USB 16-bit NI USB-9162 A/D board, sampling frequency 3000 Hz, low pass filter 1000 Hz, 131,072 samples, time series 43.690 s long. The uncertainties of the velocity measurements are about 3% and for the pressure 8.5%. Probes and microphones were enumerated 1 and 2. Microphone 1 was in a corresponding position to probe 1, and microphone 2 with probe 2. Time series of pressure fluctuations were generated separately from velocity series but simultaneously. Velocity series files - according to the Reynolds number: Velocity signals from the hot wire anemometers (m/s) – Time (s); velocity Probe 1 (u1); velocity Probe 2 (u2). Re_10600_Velocity.txt Re_21600_Velocity.txt Re_25700_Velocity.txt Pressure fluctuation files - according to the Reynolds number: Pressure fluctuations signals from condenser microphones [Pa] – Time (s); Pressure Microphone 1 (P1); Pressure Microphone 2 (P2). Re_10600_Pressure.txt Re_21600_Pressure.txt Re_25700_Pressure.txt Data are in .txt format to be read by almost all software.
DOI: 10.5281/zenodo.4280896
title: Systematic Literature Review on Meta-Models in BPM: Material

description: Material related to the Systematic Literature Review on Meta-Models in Business Process Management
DOI: 10.6084/m9.figshare.13182524.v1
title: Predator-induced plasticity and the temperature dependence of predator-prey activity and population dynamics

description: Using a mesocosm experiment with dragonfly larvae (predator) and newt larvae (prey), we tested if the predator-induced plasticity alters the elevation or the slope of the thermal reaction norms for locomotor activity metrics in prey. We also estimated the joint predator-prey thermal response in mean velocity, which determines prey encounter rate, and used a biomass-based model to examine the effect of both phenomena on predator-prey population dynamics. <br><br><br>
DOI: 10.6084/m9.figshare.7707437.v1
title: 1b.Network_Reconstruction_files

description: In Network_Reconstruction_files.tgz are the major files required to run network reconstruction and some output files:<br>- geneNamesTree # gene orthology of cichlid IDs, Ensembl IDs and gene descriptions<br>- Hs-Mm_EnsemblOrthology.txt # Ensembl orthology of Human and Mouse gene IDs<br>- full_orthologs_map3c.txt # contains the published orthologs gene IDs for mapping used previously<br>- list_k10 # list of k10 module numbers<br>- list_species # list of species<br>- OGIDS.txt # orthogroups<br>- OGIDS.txt5 # processed orthogroups file<br>- *_07.extrap.annotations.blast_out # extrapolation of motifs in cichlid gene promoters using human and mouse orthology <br>- mz-speciesspecnames_clusterassign.txt # Arboretum module assignment of M. zebra genes<br>- pn-speciesspecnames_clusterassign.txt # Arboretum module assignment of P. nyererei genes<br>- ab-speciesspecnames_clusterassign.txt # Arboretum module assignment of A. burtoni genes<br>- nb-speciesspecnames_clusterassign.txt # Arboretum module assignment of N. brichardi genes<br>- on-speciesspecnames_clusterassign.txt # Arboretum module assignment of O. niloticus genes<br>- geneNamesMapping.txt # gene orthology of cichlid IDs, Ensembl IDs and gene descriptions<br>- MzPnAbNbOnGenome-BLAST_PresentNULLOGIDS-noCand-noTF.txt2 # 4209 orthogroups with NULL orthogroup IDs for one or species are actually present in the genome (mis-annotations etc.) and not lost/absent<br>- motifenr_merged-TFBSs_map2d.txt # output of processing files in TFBSs - Motif Discovery in gene promoter regions<br>- tftgco_merged.txt # output of processing TF-TG co-expression files
DOI: 10.6084/m9.figshare.7712423.v1
title: 1a.TF_motif_scanning_outputs

description: This contains output files from the TF motif scanning scripts:<br># Motif Scanning scripts are shared in the '2a.TF_motif_scanning' folder<br># Summary of motif scanning<br># Species-specific promoter sequences used as 0-order markov backgrounds<br># FIMO ran with default p-value (1e-4)<br># Files will be of Mouse and Human Extrapolations, Cichlid-specific (CS) and Cichlid-wide (CW) and Vertebrate JASPAR motifs - NOTE: with the exception of extrapolation files (*_07.extrap.annotations.blast_out), all other raw output files (CS and CW) are available upon requests<br># Otherwise, the final file prepared from these outputs - 'motifenr_merged-TFBSs_map2d.txt' is found with all the other files in '1.Network_Reconstruction_files'<br>
DOI: 10.17632/55x6z7r5bf.1
title: VRP with private and shared delivery locations (Instances)

description: Instances for the VRP with private and shared delivery locations
DOI: 10.25835/npzsh4i4
title: Investigation of the joining zone formation of impact extruded hybrid components by varied forming sequence and partial cooling

description: Figures, Metallography, EDX, SEM, Diagrams, Literature
DOI: 10.5281/zenodo.7416027
title: Neighborhood classification (20 biggest Finnish cities)

description: Neighborhood classification for the 20 biggest cities in Finland, created from 250x250 m grid cells and data on the type of most typical buildings, the construction year of the neighborhood, and information on whether the neighborhood belongs to a city center. Includes seven classes of neighborhood types: centers (ClassId 1), blocks of flats from the 1950s and before (ClassId 2), blocks of flats from the 1960s and 1970s (ClassId 3), blocks of flats from the1980s and 1990s (ClassId 4), blocks of flats from the 2000s (ClassId 5), low-rise neighborhoods built before the 2000s (ClassId 6), and low-rise neighborhoods built after 2000 (ClassId 7). Each separate neighbourhood has an unique identifier (NeighborhoodId).
DOI: 10.5281/zenodo.7416026
title: Neighborhood classification (20 biggest Finnish cities)

description: Neighborhood classification for the 20 biggest cities in Finland, created from 250x250 m grid cells and data on the type of most typical buildings, the construction year of the neighborhood, and information on whether the neighborhood belongs to a city center. Includes seven classes of neighborhood types: centers (ClassId 1), blocks of flats from the 1950s and before (ClassId 2), blocks of flats from the 1960s and 1970s (ClassId 3), blocks of flats from the1980s and 1990s (ClassId 4), blocks of flats from the 2000s (ClassId 5), low-rise neighborhoods built before the 2000s (ClassId 6), and low-rise neighborhoods built after 2000 (ClassId 7). Each separate neighbourhood has an unique identifier (NeighborhoodId).
DOI: 10.17632/3w3rb3stt2.1
title: GAS Data 2015 n=25

description: Objective. The purpose of the current study was to examine outcomes of a modified version of goal attainment scaling following cognitive remediation in a female only residential substance use disorder rehabilitation setting. 
Method. Participants were N=25 female residents of a substance use disorder therapeutic community who were allocated to a four-week cognitive remediation program (n=13) or treatment as usual (n=12) control group in a controlled sequential groups trial. A modified version of goal attainment scaling that uses a goal menu, calculator and control goals was used to set goals at baseline. The primary outcome was goal attainment 21-weeks post-baseline. 
Results. As predicted, target goals were achieved at a higher rate than control goals for those in the Intervention, but not Control group, with a medium effect size (r = 0.5).
DOI: 10.6084/m9.figshare.21708278
title: Phylonet_input_trees.nex

description: Phylonet input
DOI: 10.6084/m9.figshare.21708278.v1
title: Phylonet_input_trees.nex

description: Phylonet input
DOI: 10.6084/m9.figshare.21710066
title: Gordonetal_2022_Ecological.Application_Data

description: The file shows all the raw datasets used in the manuscript " <strong>Elephant rewilding affects landscape openness and fauna habitat across a 92-year period</strong>", which is published in the journal <em>Ecological Applications</em>. <br> The metadata describing the data is shown in a seperate "tab".
DOI: 10.6084/m9.figshare.21710144
title: phylonet results

description: <strong>Phylogenomics reveal extensive phylogenetic discordance due to incomplete lineage sorting following the rapid radiation of alpine butterflies (Papilionidae: </strong><em><strong>Parnassius</strong></em><strong>)</strong>
DOI: 10.6084/m9.figshare.21710144.v1
title: phylonet results

description: <strong>Phylogenomics reveal extensive phylogenetic discordance due to incomplete lineage sorting following the rapid radiation of alpine butterflies (Papilionidae: </strong><em><strong>Parnassius</strong></em><strong>)</strong>
DOI: 10.6084/m9.figshare.21710144.v2
title: phylonet results

description: <strong>Phylogenomics reveal extensive phylogenetic discordance due to incomplete lineage sorting following the rapid radiation of alpine butterflies (Papilionidae: </strong><em><strong>Parnassius</strong></em><strong>)</strong>
DOI: 10.5281/zenodo.7351244
title: Spatially resolved transcriptomics reveals innervation-responsive functional clusters in skeletal muscle

description: Spatial Transcriptomics Data of murine skeletal muscle undergoing reversible nerve injury. Accompanying the manuscript, D'Ercole et al. <strong>"Spatially resolved transcriptomics reveals innervation-responsive functional clusters in skeletal muscle".</strong> <strong>Release v1: </strong>This release Includes all the code used to generate the figures and the processed and integrated original dataset in rds format.
DOI: 10.5281/zenodo.7351243
title: Spatially resolved transcriptomics reveals innervation-responsive functional clusters in skeletal muscle

description: Spatial Transcriptomics Data of murine skeletal muscle undergoing reversible nerve injury. Accompanying the manuscript, D'Ercole et al. <strong>"Spatially resolved transcriptomics reveals innervation-responsive functional clusters in skeletal muscle".</strong> <strong>Release v1: </strong>This release Includes all the code used to generate the figures and the processed and integrated original dataset in rds format.
DOI: 10.25505/fiz.icsd.cc2dq52d
title: CSD 2225833: Experimental Crystal Structure Determination

description: Related Article: E. Duverger-Nédellec, P. Doležal, L.-M. Chamoreau, J. Forté, M. Falkowski, A. V. Andreev, and L. Havela|2022|ICSD Communication|||
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7418725
title: The Fingerprint of Climate Variability on the Surface Ocean Cycling of Iron and its Isotopes

description: Monthly-average netcdf output files on the ORCA2 grid of NEMO/PISCES Fe isotope model experiments run under variable climatic conditions.
DOI: 10.5281/zenodo.7416374
title: ingewortel/2022-listeria-goblets: code & raw data files for publication

description: Repository with code and raw data at the stage of publication. The repository contains mostly code, but also some raw data files used to generate the data figures of the manuscript. The repository is self-sufficient to reproduce all the simulations and data analyses performed. See the README files for further details.
description: M.J.M. was supported by R01-AI077600 funded by the National Institutes of Health-National Institute of Allergy and Infectious Diseases (https://www.niaid.nih.gov/) and I.W. by RGP0053/2020 through the Human Frontiers Science Program (https://www.hfsp.org/).
DOI: 10.5281/zenodo.7416373
title: ingewortel/2022-listeria-goblets: code & raw data files for publication

description: Repository with code and raw data at the stage of publication. The repository contains mostly code, but also some raw data files used to generate the data figures of the manuscript. The repository is self-sufficient to reproduce all the simulations and data analyses performed. See the README files for further details.
description: M.J.M. was supported by R01-AI077600 funded by the National Institutes of Health-National Institute of Allergy and Infectious Diseases (https://www.niaid.nih.gov/) and I.W. by RGP0053/2020 through the Human Frontiers Science Program (https://www.hfsp.org/).
DOI: 10.6084/m9.figshare.21710168
title: Determinants of Customer-Based Brand Equity on Brand Image: The moderating role of Tourism Management and Advertisement

description: In the context of the Bangladesh tourist sector, this study seeks to clarify the factors that influence customer-based brand equity and brand image as well as to pinpoint the moderating effects of tourism management and advertising. Using a multi-stage sampling technique, data were gathered from guests of a chosen group of Bangladeshi 4- and 5-star hotels using structured questionnaires, and smart PLS 2.0 was used for analysis. <br> This study intends to uncover the brand image moderating effects of tourism management and advertising as well as to further define the factors of customer-based brand equity that influence brand image. The following 18 (eighteen) research hypotheses have been generated to test the proposed research model for this empirical study based on a thorough evaluation of discussed marketing and branding.
DOI: 10.6084/m9.figshare.21710168.v1
title: Determinants of Customer-Based Brand Equity on Brand Image: The moderating role of Tourism Management and Advertisement

description: In the context of the Bangladesh tourist sector, this study seeks to clarify the factors that influence customer-based brand equity and brand image as well as to pinpoint the moderating effects of tourism management and advertising. Using a multi-stage sampling technique, data were gathered from guests of a chosen group of Bangladeshi 4- and 5-star hotels using structured questionnaires, and smart PLS 2.0 was used for analysis. <br> This study intends to uncover the brand image moderating effects of tourism management and advertising as well as to further define the factors of customer-based brand equity that influence brand image. The following 18 (eighteen) research hypotheses have been generated to test the proposed research model for this empirical study based on a thorough evaluation of discussed marketing and branding.
DOI: 10.6084/m9.figshare.21710210
title: IJWC 2028 Appendix

description: TABLE A1 Overview of all cores taken from the roof timbers of the Church of St. Nicholas, Ghent
DOI: 10.6084/m9.figshare.21710210.v1
title: IJWC 2028 Appendix

description: TABLE A1 Overview of all cores taken from the roof timbers of the Church of St. Nicholas, Ghent
DOI: 10.5281/zenodo.7426465
title: FT-ICR-MS annotations of thermal processing emissions by different API sources

description: Thermal processing emissions from baked wheat dough were compared by ESI, APCI, APPI and SICRIT. This file gives an overview about annotated molecular formulas found in the datasets.
DOI: 10.5281/zenodo.7426466
title: FT-ICR-MS annotations of thermal processing emissions by different API sources

description: Thermal processing emissions from baked wheat dough were compared by ESI, APCI, APPI and SICRIT. This file gives an overview about annotated molecular formulas found in the datasets.
DOI: 10.4121/20219616.v1
title: Data processing and plotting underlying the manuscript: Microwave spectroscopy of a spin trapped in a quantum dot Josephson junction

description: This file contains all of the processing and plotting of the raw data used in the manuscript.
DOI: 10.4121/20219616.v2
title: Data processing and plotting underlying the manuscript: Spectroscopy of spin-split Andreev levels in a quantum dot with superconducting leads

description: This file contains all of the processing and plotting of the raw data used in the manuscript.