cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3727513_d12.v1
title: Additional file 9 of The autophagy interaction network of the aging model Podospora anserina

description: Autophagy PPI network of P. anserina. This files contains the tabular representation of Fig. 3 and provides all underlying data of the constructed PPI network of autophagy. The network consists of all interactions from the prediction approach and the yeast two-hybrid analysis. It includes the ID of the interaction, the source ID, the target ID, and the score. This file also contains further information about the corresponding reference interactions. For each predicted interaction, the reference interaction from yeast and / or human with the corresponding publication, author, and interaction type is listed. In addition, the file contains the expression data which are depicted as expression profiles in Fig. 3. UniProt accession numbers were used as identifiers for proteins of yeast and human. The identifiers for P. anserina proteins were adopted from the P. anserina genome database. Species were distinguished by their NCBI taxonomy IDs: Homo sapiens (9606), Podospora anserina (5145) and Saccharomyces cerevisiae S288c (559292). (XLS 271 kb)
DOI: 10.6084/m9.figshare.c.3727513_d12
title: Additional file 9 of The autophagy interaction network of the aging model Podospora anserina

description: Autophagy PPI network of P. anserina. This files contains the tabular representation of Fig. 3 and provides all underlying data of the constructed PPI network of autophagy. The network consists of all interactions from the prediction approach and the yeast two-hybrid analysis. It includes the ID of the interaction, the source ID, the target ID, and the score. This file also contains further information about the corresponding reference interactions. For each predicted interaction, the reference interaction from yeast and / or human with the corresponding publication, author, and interaction type is listed. In addition, the file contains the expression data which are depicted as expression profiles in Fig. 3. UniProt accession numbers were used as identifiers for proteins of yeast and human. The identifiers for P. anserina proteins were adopted from the P. anserina genome database. Species were distinguished by their NCBI taxonomy IDs: Homo sapiens (9606), Podospora anserina (5145) and Saccharomyces cerevisiae S288c (559292). (XLS 271 kb)
DOI: 10.6084/m9.figshare.27221241
title: A Genetic Algorithm with Convex Combination Crossover for Software Team Formation: Integrating Technical and Collaboration Skills [Supplementary Material]

description: Supplementary material
DOI: 10.6084/m9.figshare.27221241.v13
title: A Genetic Algorithm with Convex Combination Crossover for Software Team Formation: Integrating Technical and Collaboration Skills [Supplementary Material]

description: Supplementary material
DOI: 10.15468/dl.qr5q2e
title: Occurrence Download

description: A dataset containing 4799 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sternula lorata (Philippi & Landbeck, 1861)"
 ]
}

 The dataset includes 4799 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038411-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3727555_d7.v1
title: Additional file 7: Table S7. of Blood-feeding patterns of native mosquitoes and insights into their potential role as pathogen vectors in the Thames estuary region of the United Kingdom

description: Raw data collected in the study. (XLSX 934 kb)
DOI: 10.6084/m9.figshare.c.3727555_d7
title: Additional file 7: Table S7. of Blood-feeding patterns of native mosquitoes and insights into their potential role as pathogen vectors in the Thames estuary region of the United Kingdom

description: Raw data collected in the study. (XLSX 934 kb)
DOI: 10.6084/m9.figshare.c.3727531_d5.v1
title: Additional file 3: Table S3. of Genome-wide identification of conserved intronic non-coding sequences using a Bayesian segmentation approach

description: Genes with PFEs classified as transcription factors. The Ensembl ID for all gene containing PFEs that have been classified as transcription factors or transcription co-factors is provided as identified by AnimalTFDB (http://bioinfo.life.hust.edu.cn/AnimalTFDB/index.shtml; Zhang et al. 2012). Eight extra genes containing PFEs not identified by AnimalTFDB were found to be enriched with GO terms associated transcription factors. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3727531_d5
title: Additional file 3: Table S3. of Genome-wide identification of conserved intronic non-coding sequences using a Bayesian segmentation approach

description: Genes with PFEs classified as transcription factors. The Ensembl ID for all gene containing PFEs that have been classified as transcription factors or transcription co-factors is provided as identified by AnimalTFDB (http://bioinfo.life.hust.edu.cn/AnimalTFDB/index.shtml; Zhang et al. 2012). Eight extra genes containing PFEs not identified by AnimalTFDB were found to be enriched with GO terms associated transcription factors. (XLSX 10 kb)
DOI: 10.15468/dl.2ukssh
title: Occurrence Download

description: A dataset containing 1409 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centroscymnus coelolepis Barbosa du Bocage & de Brito Capello, 1864",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1409 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038412-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3727531_d6.v1
title: Additional file 4: Table S4. of Genome-wide identification of conserved intronic non-coding sequences using a Bayesian segmentation approach

description: GO terms related to Transcription Factors. The frequency of GO terms relating to transcription factors in gene containing PFEs, compared to all zebrafish genomes. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3727621_d1.v1
title: Additional file 1: of Estimating genome-wide regulatory activity from multi-omics data sets using mathematical optimization

description: Lists information about the samples and files from TCGA included in our quantitative evaluation for all three cancer types (COAD, LIHC and PAAD). (XLS 697Â kb)
DOI: 10.6084/m9.figshare.c.3727621_d1
title: Additional file 1: of Estimating genome-wide regulatory activity from multi-omics data sets using mathematical optimization

description: Lists information about the samples and files from TCGA included in our quantitative evaluation for all three cancer types (COAD, LIHC and PAAD). (XLS 697Â kb)
DOI: 10.6084/m9.figshare.c.3727531_d6
title: Additional file 4: Table S4. of Genome-wide identification of conserved intronic non-coding sequences using a Bayesian segmentation approach

description: GO terms related to Transcription Factors. The frequency of GO terms relating to transcription factors in gene containing PFEs, compared to all zebrafish genomes. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3727624_d2.v1
title: Additional file 2 of Quantifying the impact of current and future concentrations of air pollutants on respiratory disease risk in England

description: Study data. This is a .zip file containing the data used in the study. The file also contains a read-me document summarising the content of the file. (ZIP 5070 kb)
DOI: 10.6084/m9.figshare.c.3727621_d2.v1
title: Additional file 2: of Estimating genome-wide regulatory activity from multi-omics data sets using mathematical optimization

description: Includes an adjacency list of the connected nodes of the TF – gene network. The list includes three columns (“TF”, “gene”, “edge”) where each row indicates an association with the value of “edge” between a TF and a gene. Complexes of TFs are indicated with a separating “.” between their components. (TXT 39 kb)
DOI: 10.6084/m9.figshare.c.3727624_d2
title: Additional file 2 of Quantifying the impact of current and future concentrations of air pollutants on respiratory disease risk in England

description: Study data. This is a .zip file containing the data used in the study. The file also contains a read-me document summarising the content of the file. (ZIP 5070 kb)
DOI: 10.6084/m9.figshare.c.3727621_d2
title: Additional file 2: of Estimating genome-wide regulatory activity from multi-omics data sets using mathematical optimization

description: Includes an adjacency list of the connected nodes of the TF – gene network. The list includes three columns (“TF”, “gene”, “edge”) where each row indicates an association with the value of “edge” between a TF and a gene. Complexes of TFs are indicated with a separating “.” between their components. (TXT 39 kb)
DOI: 10.6084/m9.figshare.c.3727630_d2.v1
title: Additional file 2: of Unraveling the complexity of transcriptomic, metabolomic and quality environmental response of tomato fruit

description: Dataset S1-S4. list Pearsonâ  s correlations between transcripts, metabolites and sensorial profiles in SM and RSV in the two environments. Dataset S5., Dataset S6. and Dataset S7. show the novel genes identified in H, SM and RSV with relative functional annotation. Datasets S8-S13. list the Gene ontology enrichment analysis for the up-regulated genes in H, SM and RSV in the two environments. Dataset S14. and Dataset S15. show aboundance measurements of semi-polar and non polar metaboplites in the three tomato genotypes in the two environments. (XLSX 13074Â kb)
DOI: 10.6084/m9.figshare.c.3727630_d2
title: Additional file 2: of Unraveling the complexity of transcriptomic, metabolomic and quality environmental response of tomato fruit

description: Dataset S1-S4. list Pearsonâ  s correlations between transcripts, metabolites and sensorial profiles in SM and RSV in the two environments. Dataset S5., Dataset S6. and Dataset S7. show the novel genes identified in H, SM and RSV with relative functional annotation. Datasets S8-S13. list the Gene ontology enrichment analysis for the up-regulated genes in H, SM and RSV in the two environments. Dataset S14. and Dataset S15. show aboundance measurements of semi-polar and non polar metaboplites in the three tomato genotypes in the two environments. (XLSX 13074Â kb)
DOI: 10.6084/m9.figshare.c.3727531_d7.v1
title: Additional file 5: Table S5. of Genome-wide identification of conserved intronic non-coding sequences using a Bayesian segmentation approach

description: Intergenic PFEs identified in genome-wide analysis. For each intergenic PFE overlap with Evofold or RNAz predictions, DNaseI footprint data, entry in the fRNAdb, or previous lncRNA publications is presented. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3727654_d6.v1
title: MOESM15 of Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production

description: Additional file 15. Summary of whole genome sequencing statistics.
DOI: 10.6084/m9.figshare.c.3727654_d7.v1
title: MOESM1 of Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production

description: Additional file 1. Geographical, genetic, and kinetic parameter information for hybrids.
DOI: 10.6084/m9.figshare.c.3727654_d6
title: MOESM15 of Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production

description: Additional file 15. Summary of whole genome sequencing statistics.
DOI: 10.6084/m9.figshare.c.3727654_d7
title: MOESM1 of Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production

description: Additional file 1. Geographical, genetic, and kinetic parameter information for hybrids.
DOI: 10.6084/m9.figshare.c.3727654_d8.v1
title: MOESM2 of Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production

description: Additional file 2. Initial fermentation screen to select the most-promising Saccharomyces strains. An exploratory, single replicate fermentation was conducted, and the extracellular metabolite concentrations of selected wild Saccharomyces and synthetic hybrids, ethanol yields based on sugar consumed, and percentages of glucose and xylose at the end of the 14 days ACSH fermentation at 24 °C are given. Strain names in green were selected for the next round of triplicate fermentations in four different media conditions at 24 °C. 1: selected engineered strain, 2: selected based on kinetics, 3: selected based on fermentative traits. Green, red, and gray row background colors indicate the best growing strains, the slowest growing strains, and the synthetic hybrids, respectively. Glu: glucose; Xyl: xylose; EtOH: ethanol; Gly: glycerol; Xli: xylitol; Ace: acetate; Cons: consumed.
DOI: 10.6084/m9.figshare.c.3727654_d10.v1
title: MOESM4 of Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production

description: Additional file 4. Mean and standard deviation (SD) of extracellular compounds during fermentations at different time points.
DOI: 10.6084/m9.figshare.c.3727654_d8
title: MOESM2 of Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production

description: Additional file 2. Initial fermentation screen to select the most-promising Saccharomyces strains. An exploratory, single replicate fermentation was conducted, and the extracellular metabolite concentrations of selected wild Saccharomyces and synthetic hybrids, ethanol yields based on sugar consumed, and percentages of glucose and xylose at the end of the 14 days ACSH fermentation at 24 °C are given. Strain names in green were selected for the next round of triplicate fermentations in four different media conditions at 24 °C. 1: selected engineered strain, 2: selected based on kinetics, 3: selected based on fermentative traits. Green, red, and gray row background colors indicate the best growing strains, the slowest growing strains, and the synthetic hybrids, respectively. Glu: glucose; Xyl: xylose; EtOH: ethanol; Gly: glycerol; Xli: xylitol; Ace: acetate; Cons: consumed.
DOI: 10.6084/m9.figshare.c.3728623_d2.v1
title: Additional file 2 of Basal-like breast cancer: molecular profiles, clinical features and survival outcomes

description: Basal-like samples classification into Basal I and Basal II, and the centroids defining them. Tables S1 and S2 list sample IDs for each basal-like subgroup, Basal I and Basal II; centroids are also provided in Table S3. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3728635_d1
title: Additional file 1: of The impact of ocular trauma during the Nepal earthquake in 2015

description: Is the Raw Data of Earthquake victims treated at Tilganga Institute of Ophthalmology in Kathmandu in 2015. The file includes two sheets, the Data sheet and Coding sheet. The Data Sheet includes data of each patient in terms of age, sex, address, the timing of trauma and the timing of treatment in the hospital, as well as the vision of the affected eye, laterality, management and the final vision. The Coding sheet covers the code for each parameter. The data of personal identity information will not be made available in order to protect the patientsâ   privacy. (XLS 38Â kb)
DOI: 10.6084/m9.figshare.c.3728623_d2
title: Additional file 2 of Basal-like breast cancer: molecular profiles, clinical features and survival outcomes

description: Basal-like samples classification into Basal I and Basal II, and the centroids defining them. Tables S1 and S2 list sample IDs for each basal-like subgroup, Basal I and Basal II; centroids are also provided in Table S3. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3728623_d3.v1
title: Additional file 3 of Basal-like breast cancer: molecular profiles, clinical features and survival outcomes

description: Functional annotation of G1, G2 and G3 probe sets. These tables contain all probes defined for G1 (Table S4), G2 (Table S5) and G3 (Table S6). The annotation is based on the Database for Annotation, Visualization and Integrated Discovery (DAVID). (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3728623_d3
title: Additional file 3 of Basal-like breast cancer: molecular profiles, clinical features and survival outcomes

description: Functional annotation of G1, G2 and G3 probe sets. These tables contain all probes defined for G1 (Table S4), G2 (Table S5) and G3 (Table S6). The annotation is based on the Database for Annotation, Visualization and Integrated Discovery (DAVID). (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3728656_d1.v1
title: Additional file 1: Table S1. of Genome-wide methylation analysis identifies a core set of hypermethylated genes in CIMP-H colorectal cancer

description: 258 genes hypermethylated in more than 90% of all CIMP-H tumours. Two-hundred fifty eight CpG islands are hypermethylated in more than 90% of CIMP-H tumours. CpG islands hypermethylated in 100% of CIMP-H tumours are highlighted in bold. (XLSX 49Â kb)
DOI: 10.15468/dl.gp59a8
title: Occurrence Download

description: A dataset containing 7913 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centroscymnus crepidater (Barbosa du Bocage & de Brito Capello, 1864)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 7913 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038413-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3728647_d2.v1
title: Additional file 2: of Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment

description: Descriptions of sequencing data used to construct a mouse epigenetic-aging model. Tables describing the samples used to train and test the mouse epigenetic-aging model, and detailed alignment statistics corresponding to the samples used for analyses related to FigsÂ 2 and 3. (XLSX 93 kb)
DOI: 10.15468/dl.esdj3b
title: Occurrence Download

description: A dataset containing 73984 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is VectorDistributionStatus"
 ]
}

 The dataset includes 73984 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004780-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.34asmh
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ireland",
 "Geometry POLYGON((-7.6767 54.84931,-7.66205 54.8477,-7.65115 54.85232,-7.64594 54.85981,-7.64333 54.87117,-7.64808 54.88348,-7.6549 54.88896,-7.66419 54.89077,-7.67362 54.8895,-7.68221 54.88614,-7.68633 54.88167,-7.69027 54.87244,-7.68706 54.85633,-7.6767 54.84931))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia",
 "Year 2001-2025"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004793-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jkj5ew
title: Occurrence Download

description: A dataset containing 11021 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Fossil, Specimen)",
 "OccurrenceStatus is Present",
 "TaxonKey is Panthera"
 ]
}

 The dataset includes 11021 records from 203 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004794-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5cp4at
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pueraria thumbergiana (Siebold & Zucc.) Benth.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023147-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mu8qb7
title: Occurrence Download

description: A dataset containing 127458 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Gleditsia triacanthos L.)"
 ]
}

 The dataset includes 127458 records from 692 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023142-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r6xqe4
title: Occurrence Download

description: A dataset containing 25560 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Soil metagenome from healthy and unhealthy agricultural soil"
 ]
}

 The dataset includes 25560 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023148-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hxdq7v
title: Occurrence Download

description: A dataset containing 22512 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ipomoea cairica (L.) Sweet"
 ]
}

 The dataset includes 22512 records from 427 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023149-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w32yas
title: Occurrence Download

description: A dataset containing 267 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pueraria thunbergiana (Siebold & Zucc.) Benth.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 267 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023150-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5fuj5z
title: Occurrence Download

description: A dataset containing 45472 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mythimna unipuncta (Haworth, 1809)"
 ]
}

 The dataset includes 45472 records from 282 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023151-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9uj9e
title: Occurrence Download

description: A dataset containing 11224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rhynchosia minima (L.) DC.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11224 records from 347 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023153-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.