cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.v18gc77/2
title: Fig S1 B cpDNA

description: Fig. S1. The cladogram of the ML tree from the nrDNA data (ITS, ETS) (A), and the cpDNA data (trnL-trnF, psbA-trnH) (B), showing the position of Artemisia baxoiensis. Values above branch represent Bayesian posterior probabilities (PP) and bootstrap values (BS) for maximum likelihood respectively; the dash (–) indicates PP &lt; 0.90 or BS &lt; 50%. Samples of the new species are colored in red.
DOI: 10.17632/8kgdmrd5wf.1
title: Data for: HDAC1 Interacts with the p50 NF-κB Subunit via its Nuclear Localization Sequence to Constrain Inflammatory Gene Expression

description: Source data analysis of RT-QPCR, ELISA, Luciferase, ChIP and Chemotaxsis Assays.
DOI: 10.17632/mbwwxd62wm.1
title: Data for: Seismic behavior of exposed concrete filled steel tube column bases with embedded reinforcing bars: Experimental investigation
DOI: 10.5061/dryad.09hh050/1
title: process data
DOI: 10.5061/dryad.17371h3/1
title: Pathogen data

description: This file contains the DWV variant sequences and data, as well as the broad pathogen screen data for Vespula pensylvanica and Apis mellifera from Hawaii Volcanoes National Park.
DOI: 10.5061/dryad.1j7g2k8/3
title: Excel of Raw data with figures embedded.
DOI: 10.5061/dryad.21mb45j/10
title: DCra15_Chdes_SilicoDArT

description: Presence/Absence data (SilicoDArT) provided by Diversity Arrays Technology (refer to https://www.diversityarrays.com/ for further information on data formats). Zipped.
DOI: 10.5061/dryad.21mb45j/11
title: DCra15_Chdes_SNP_2row

description: SNP dataset (DArTSeq) provided by Diversity Arrays Technology in 2-Row format (refer to https://www.diversityarrays.com/ for further information on data formats)
DOI: 10.5061/dryad.21mb45j/12
title: README
DOI: 10.5061/dryad.21mb45j/5
title: Cherax_prelim_pop_recode

description: Recode table to tidy up population labels, and other issues that arose during the sequencing.
DOI: 10.5061/dryad.21mb45j/6
title: cherax_prelim_ind_recode

description: Recode table to tidy up individual labels, duplicates and other issues that arose during the sequencing.
DOI: 10.5061/dryad.21mb45j/7
title: cherax_ingroup_only

description: The ingroup dataset saved in compact binary form as a genlight object. Can be read with gl
DOI: 10.5061/dryad.21mb45j/8
title: cherax_ind_metadata

description: Metadata to assign to individuals when the two genlight objects are constructed. Used by script gl.read.dart() in Cherax_data_input.R
DOI: 10.5061/dryad.21mb45j/9
title: cherax_full_gl

description: The full dataset saved in compact binary form as a genlight object. Can be read with gl
DOI: 10.5061/dryad.2r534cf/1
title: Flash data file

description: Excel files that contain the data used for both conspicuous and body size experiments.
DOI: 10.5061/dryad.3f835vc/1
title: Body to mass conversion data

description: The a and b coefficients for body length-to-body mass conversion for the species of interest, as reported by Brooks (2011).
DOI: 10.5061/dryad.3f835vc/2
title: Dominance matrix estimated from combined data

description: Dominance matrix estimated after combining displacement data from live observation and video recordings.
DOI: 10.5061/dryad.3f835vc/3
title: One-on-one dominance matrix estimated from combined data

description: Dominance matrix estimated exclusively from one-on-one interactions, including both those that were observed live and those that were recorded on video.
DOI: 10.5061/dryad.3ht7gr3/1
title: Grey reef shark occurrence and behavior

description: Occurrence of C. amblyrhynchos and its feeding behavior towards stereo-BRUVS (Baited Remote Underwater Video System) in New Caledonia. This file also includes (i) the abundance of sharks (conspecifics and heterospecifics) during the video recording, (ii) the sex and length of the individuals recorded and (iii) the 3 human and 5 environmental explanatory variables used in the models.
DOI: 10.5061/dryad.52vk268/1
title: BE_widow_devel_analysis

description: R script and data
DOI: 10.5061/dryad.5sb71/3
title: Chinese_indigenous_chickens

description: Genotype data for chinese indigenous chickens
DOI: 10.5061/dryad.6mc1606/3
title: ESM5 Mitochondrial genomes

description: White rhinoceros mitochondrial genome sequence data
DOI: 10.5061/dryad.714977g/1
title: Data resulting from an experiment testing for post-copulatory avoidance of kin

description: The excel file contains 5 worksheets, each of them being used for one particular statistical analysis. The worksheet named "Siring success" provides the data necessary to analyse the impact of parental relatedness on siring success. The worksheet" Hatching success" provides the data to test for the impact on parental relatedness on hatching success. The worksheet "Biometry hatching" provides the data to compare offspring body mass, size and condition at hatching according to parental relatedness. The worksheet "Growth" provides the data to compare offspring growth (body mass, size and condition) during the first three months of life according to parental relatedness. Finally, the worksheet "Survival" provides the data to test whether offspring survival during the first months of life depends on parental relatedness.
DOI: 10.5061/dryad.79928sj/1
title: SNP data for full GBS population of Medicago polymorpha

description: This file contains all SNP data for the full GBS population, as referenced in the publication.
1st column: assigns individuals to the deep GBS population (denoted by 1)
2nd column: Lists the unique IDs for each individual.  In the deep GBS collection, N or I refers to Native or Invaded; followed by the three-letter population designation, and the five-digit ID.
3rd through N column: Designates the diploid alleles for each locus.  1=A, 2=C, 3=G, and 4=T.  0 indicates NA, or no data.
DOI: 10.5061/dryad.79928sj/2
title: Mpolymorpha_FloweringTimeData

description: This file describes the time until first flowering of each M. polymorpha individual in our common garden experiment, along with other associated data including the latitude and longitudinal coordinates of origin, the population, and whether or not the individual was included in the genotyping by sequencing study.  It is noted that this file contains all of the individuals included in our common garden experiment, and individuals later determined to be a relative of M. polymorpha are indicated.
DOI: 10.5061/dryad.7f9q2cd/1
title: Genotype data for 394 coyotes at 22,935 SNPs

description: Plink format (map & ped) genotype files along with sample meta data.
DOI: 10.5061/dryad.8206227/1
title: S1A-Psittaciformes-Coverage-Applied

description: S1A Text. Reasoner input constraints for the 2015./2014.Psittaciformes alignment, with coverage globally applied. Includes information on run commands; and 0 instances of "no coverage". File format: .txt.
DOI: 10.5061/dryad.8206227/2
title: S1B-Psittaciformes-Coverage-Applied

description: S1B Fig. Input visualization for the 2015./2014.Psittaciformes alignment, with coverage globally applied. File format: .pdf.
DOI: 10.5061/dryad.8206227/3
title: S2A-Psittaciformes-Coverage-Applied-0-mnpw

description: S2A Fig. Alignment visualization for the 2015./2014.Psittaciformes alignment, with coverage globally applied. File format: .pdf.
DOI: 10.5061/dryad.b29p5kr/1
title: Statistic CIP-Mamma CA
DOI: 10.5061/dryad.ct6n2m1/1
title: Fossil leaf score sheets

description: Fossil leaf score sheets for sites Alturas, Remington Hill, Table Mountain, Oakdale and Anaverde for use in CLAMP.
DOI: 10.5061/dryad.ct6n2m1/2
title: Lists of fossil leaf species held at UCMP

description: Lists of the fossil leaf species held at UCMP for each of the fives sites used in our analysis, Alturas, Remington Hill, Table Mountain, Oakdale and Anaverde.
DOI: 10.5061/dryad.f861k8s/1
title: pink_shrimp_spatiotemporal_abundance_2007_2016

description: Excel file; 2 tabs: 1) shrimp size information (used for selecting appropriate size range to analyze and then determine density per site/sampling event) and 2) station habitat data for each site/sampling event
DOI: 10.5061/dryad.jg1bn4s/1
title: Supplementary_files

description: S1 provides R code to demonstrate how the i-splines fitted in a Generalized Dissimilarity Model can be used to estimate relative niche width, and thus subsequently be modified to account for evidence of broader potential tolerances than suggested by species' realized distributions.                     
                                                                                                                    
S2 provides R code and supporting data to implement a case study applying the potential-GDM concept to Australian plants.
DOI: 10.5061/dryad.n4h3672/1
title: Adjusted DNAm data for known-age animals.

description: This file contains the run adjusted DNAm data that was used for lasso analysis, creating regressions and other figure creation. It contains DNA methylation values for N=63 known age individuals across 2338 CpGs. Known age, sex and run number are all included.
DOI: 10.5061/dryad.n4h3672/2
title: Sequence count data for all CpGs

description: This file contains the count of sequences, e.g. the number of restriction enzyme cut sites of the same sequence, that was used to calculate DNAm scores for all unfiltered CpGs. This is a final count of "CCGGG" (methylated) + "GGG" (unmethylated) sequence ends. This value can be used to filter CpG sites based on 'read depth'.
DOI: 10.5061/dryad.n4h3672/3
title: Fasta filtering and DNAm scoring pipeline

description: This file takes in maxee filtered and dereplicated sample fasta files. Samples are then checked for the correct sequence site “CCGGG” or “GGG” at the beginning of each sequence. Samples are trimmed to be the same length and dereplicated using USEARCH10. A database of each set of unique sequences of CCGGG or GGG starting sites is created e.g. a methylated and unmethylated database. Samples are compared against these two databases and counts recorded to generate scores between 0-1.

DNAm scores can then be further filtered on read depth, standard deviation or output as needed.
DOI: 10.5061/dryad.n4h3672/4
title: Seabird epigenetic age assay - variable selection

description: This R script uses the data frame of DNAm values from the pipeline script as an input to the glmnet package to select for markers based on lambda 1se or min. First, samples are adjusted for any between run difference and the cv.glmnet function is used to penalise the large set of variables against known age. Any selected variables are then visualised (and filtered if needed) using simple linear regression. The final selection of markers are then used to train and test a multiple linear regression.
DOI: 10.5061/dryad.p65mc58/46
title: POE4081_R1.fq

description: Raw Illumina reads for POE4081
DOI: 10.5061/dryad.p65mc58/47
title: POE3966_R1.fq

description: Raw Illumina reads for POE3966
DOI: 10.5061/dryad.p65mc58/48
title: LNG0062_R1.fq

description: Raw Illumina reads for LNG0062
DOI: 10.5061/dryad.p65mc58/49
title: LNG0067_R1.fq

description: Raw Illumina reads for LNG0067
DOI: 10.5061/dryad.p65mc58/50
title: LNG0122_R1.fq

description: Raw Illumina reads for LNG0122
DOI: 10.5061/dryad.p65mc58/51
title: LNG0113_R1.fq

description: Raw Illumina reads for LNG0113
DOI: 10.5061/dryad.p65mc58/52
title: LNG0123_R1.fq

description: Raw Illumina reads for LNG0123
DOI: 10.5061/dryad.p65mc58/53
title: LNG0055_R1.fq

description: Raw Illumina reads for LNG0055
DOI: 10.5061/dryad.pd959.3
title: Data from: Pluck or luck: does trait variation or chance drive variation in lifetime reproductive success?
DOI: 10.5061/dryad.pd959.3/1.3
title: age2SizePars.R

description: Data file used by IdahoIPMFunctions.R
DOI: 10.5061/dryad.q12c06f.2
title: Data from: Extreme and rapid bursts of functional adaptations shape bite force in amniotes
DOI: 10.5061/dryad.q12c06f.2/1.2
title: Movie_S1
DOI: 10.5061/dryad.q12c06f.2/2.2
title: Movie_S2
DOI: 10.5061/dryad.q12c06f.2/3.2
title: Data S1 - Data_Specimen
DOI: 10.5061/dryad.q12c06f.2/4.2
title: Data S2 - Data_Taxon
DOI: 10.5061/dryad.q12c06f.2/5.2
title: Data S3 - Data_5Group
DOI: 10.5061/dryad.q9p2q59/2
title: Rcode

description: R code used in this study
DOI: 10.5061/dryad.s3r56h1/1
title: JEcol-2018-0562.R2

description: File containing data on responses at levels of demography, morphometry and growth of the seagrass Cymodocea nodosa and associated epifauna
DOI: 10.5061/dryad.sf5j2bf/1
title: Landscape genomics dataset

description: Raw landscape genomics dataset in ped/map format is provided. Instructions and ancillary files are provided to obtain the clean dataset described in the main text.
DOI: 10.5061/dryad.sf5j2bf/2
title: Population structure dataset

description: Raw population structure dataset in ped/map format is provided. Instructions and ancillary files are provided to obtain the clean dataset described in the main text.
DOI: 10.5061/dryad.sf5j2bf/3
title: Rhipicephalus appendiculatus distribution model

description: Data and analyses (R code) used to obtain the discussed Rhipicephalus appendiculatus model are provided. README information is provided in the archive.
DOI: 10.5061/dryad.sf5j2bf/4
title: Syncerus caffer distribution model

description: Data and analyses (R code) used to obtain the discussed Syncerus caffer model are provided. README information is provided in the archive.
DOI: 10.5061/dryad.sf5j2bf/5
title: Theileria parva parva infection risk model

description: Data and analyses (R code) used to obtain the discussed Theileria parva parva infection risk model are provided. README information is provided in the archive.
DOI: 10.5061/dryad.sm4tj6t/1
title: Table 1. Characteristics of included studies
DOI: 10.5061/dryad.sm4tj6t/2
title: Appendix 2. Search strategy
DOI: 10.5061/dryad.sm4tj6t/3
title: Appendix 3. Study validity criteria
DOI: 10.5061/dryad.sm4tj6t/4
title: Appendix 4. Reference list of studies included in meta-analysis
DOI: 10.5061/dryad.t358vv1/1
title: UCE alignments - baseline dataset

description: Trimmed UCE alignments in fasta format. This is the “baseline” dataset as described in the text. These same data are available on GenBank.
DOI: 10.5061/dryad.vh2j751/1
title: Supplementary Material for Alternative Tree-Cover States of the Boreal Ecosystem: a Conceptual Model

description: Supplementary information for the paper "Alternative Tree-Cover States of the Boreal Ecosystem: a Conceptual Model" by B. Abis and V. Brovkin, GEB, 2018. The folder contains a Supplementary Companion for the main manuscript, and separate folders containing data and scripts to reproduce the results of the paper. Additional information can be found in the README file.
DOI: 10.17632/4t4pv6rz3p.1
title: Data for: Integrating STEM and Skill Development (SD) for Thailand 4.0- Means, Methods and Challenges

description: Multiple open access data sources
DOI: 10.17632/6rrfg6ycbh.1
title: Data for: Underwater Blast Response of Enhanced Hourglass Truss Sandwich Panels

description: The underwater blast response of the enhanced hourglass truss sandwich panel is compared with that of identical areal mass solid panel and pyramidal truss sandwich panel under the same loading condition. Results show that the impact resistance of underwater blast of the hourglass truss sandwich panel exceeds not only that of the solid panel but also that of the pyramidal truss sandwich panel.
DOI: 10.17632/93kr7pb7dc.1
title: Data for: Effective Truth Discovery and Fair Reward Distribution for Mobile Crowdsensing

description: The attachment contains two folders: code and data. The code folder contains the Python code implemented for the models proposed and compared by the paper "Effective Truth Discovery and Fair Reward Distribution for Mobile Crowdsensing Using Sensing Expertise from IoT Infrastructures". The data folder contains the real-life sensing data collected from 10 mobile devices, which cover illuminance, sound level and WiFi signal strength.
DOI: 10.17632/g9vzrvmnsr.1
title: Data for: Impact of B2C E-Commerce on Small Retailers in Thailand: An Investigation Into Profitability, Operating Efficiency, and Employment Generation

description: Small retailers : online with offline; offline only, data collected from Thailand in 2018. The shops included - cosmetics, books & journals, mobile, and Laptop
DOI: 10.17632/n8599md3x9.1
title: Data for: 3319121

description: Database used to test my hypothesis
DOI: 10.17632/pn65pz9t9w.1
title: Data for: Client preferences and perceptions regarding a written home exercise program or video self-modeling: A cross-sectional study

description: Excel sheet with survey responses
DOI: 10.17632/vynjyx46m8.1
title: Data for: Inhaled nitric oxide to treat intermediate risk pulmonary embolism: A multicenter randomized controlled trial
DOI: 10.5061/dryad.3f835vc/10
title: Practice size estimates

description: Practice estimates of the sizes of different coral features (in cm) by J.M. ("J"), K.L. ("K"), and D.Č. ("D") to ensure inter-observer consistency.
DOI: 10.5061/dryad.3f835vc/11
title: Video fish interactions

description: A complete list of displacements that were scored from 18.2 hours of video recordings. Note that "Damselfish" refers to Dusky farmerfish (Stegastes nigricans).
DOI: 10.5061/dryad.3f835vc/4
title: Dietary classification

description: Dietary classification of the species of interest, as reported by Brooks (2011).
DOI: 10.5061/dryad.3f835vc/5
title: Field body size data

description: Body size estimates of the species of interest as recorded during repeated observations in the field.
DOI: 10.5061/dryad.3f835vc/6
title: Videos without interactions

description: Names of video files that were examined by one of the authors (K.L.) and found to contain no displacements. These contributed to the total length of footage watched, and helped estimate the "rarefaction-like" plot in Figure S4.
DOI: 10.5061/dryad.3f835vc/7
title: Live-only dominance matrix

description: Dominance matrix estimated exclusively from live observations.
DOI: 10.5061/dryad.3f835vc/8
title: Live-only one-on-one dominance matrix

description: Dominance matrix estimated exclusively from one-on-one interactions that were observed live.
DOI: 10.5061/dryad.3f835vc/9
title: Live fish interactions

description: A complete list of displacements that were observed live over the 9 days of fieldwork. Note that "Damselfish" refers to Dusky farmerfish (Stegastes nigricans) and "Melon Butterflyfish" refers to Oval butterflyfish (Chaetodon lunulatus).
DOI: 10.5061/dryad.63q3v2r/1
title: Data Descamps Ecol and Evol 2018

description: Hatching date and chick survival in Antarctic petrel, Brünnich's guillemot and black-legged kittiwakes. Data are from Svarthamaren (Dronning Maud Land, Antarctica) and from West Spitsbergen (Svalbard).
DOI: 10.5061/dryad.8206227/10
title: S5B-Eurylaimidae-Paraphyletic

description: S5B Fig. Input visualization for the alignment of passeriform clade concepts ("Phylo2015") sec. 2015.PEA with the corresponding classification concepts ("Class2015") sec. Gill & Donsker (2015); including the (paraphyletic) Class2015.Eurylaimidae. File format: .pdf.
DOI: 10.5061/dryad.8206227/11
title: S6A-Eurylaimidae-Paraphyletic-0-mnpw

description: S6A Fig. Alignment visualization for the alignment of passeriform clade concepts ("Phylo2015") sec. 2015.PEA with the corresponding classification concepts ("Class2015") sec. Gill & Donsker (2015); including the (paraphyletic) Class2015.Eurylaimidae. File format: .pdf.
DOI: 10.5061/dryad.8206227/12
title: S6B-Eurylaimidae-Paraphyletic-mir

description: S6B File. Set of Maximally Informative Relations (MIR) inferred for the alignment of passeriform clade concepts ("Phylo2015") sec. 2015.PEA with the corresponding classification concepts ("Class2015") sec. Gill & Donsker (2015); including the (paraphyletic) Class2015.Eurylaimidae. Total = 63 MIR. File format: .csv.
DOI: 10.5061/dryad.8206227/13
title: S7A-Tityridae-Paraphyletic

description: S7A Text. Reasoner input constraints for the alignment of tyrannoid clade concepts ("Phylo2015") sec. 2015.PEA with the corresponding classification concepts ("Class2015") sec. Gill & Donsker (2015); including the (paraphyletic) Class2015.Tityridae. Includes information on run commands; and 0 instances of "no coverage". File format: .txt.
DOI: 10.5061/dryad.8206227/4
title: S2B-Psittaciformes-Coverage-Applied-mir

description: S2B File. Set of Maximally Informative Relations (MIR) inferred for the 2015./2014.Psittaciformes alignment, with coverage globally applied. Total = 108 MIR. File format: .csv.
DOI: 10.5061/dryad.8206227/5
title: S3A-Psittaciformes-Coverage-Relaxed

description: S3A Text. Reasoner input constraints for the 2015./2014.Psittaciformes alignment, with coverage locally relaxed. Includes information on run commands; and 4 instances of "no coverage". File format: .txt.
DOI: 10.5061/dryad.8206227/6
title: S3B-Psittaciformes-Coverage-Relaxed

description: S3B Fig. Input visualization for the 2015./2014.Psittaciformes alignment, with coverage locally relaxed. File format: .pdf.
DOI: 10.5061/dryad.8206227/7
title: S4A-Psittaciformes-Coverage-Relaxed-0-mnpw

description: S4A Fig. Alignment visualization for the 2015./2014.Psittaciformes alignment, with coverage locally relaxed. File format: .pdf.
DOI: 10.5061/dryad.8206227/8
title: S4B-Psittaciformes-Coverage-Relaxed-mir

description: S4B File. Set of Maximally Informative Relations (MIR) inferred for the 2015./2014.Psittaciformes alignment, with coverage locally relaxed. Total = 160 MIR. File format: .csv.
DOI: 10.5061/dryad.8206227/9
title: S5A-Eurylaimidae-Paraphyletic

description: S5A Text. Reasoner input constraints for the alignment of passeriform clade concepts ("Phylo2015") sec. 2015.PEA with the corresponding classification concepts ("Class2015") sec. Gill & Donsker (2015); including the (paraphyletic) Class2015.Eurylaimidae. Includes information on run commands; and 0 instances of "no coverage". File format: .txt.
DOI: 10.5061/dryad.867g4c8/1
title: Appx I & IX

description: Appendix I - Specimens examined. Museum number acronyms are MSB= Museum of Southwestern Biology, UAM=University of Alaska Museum of the North, Fairbanks, HG= Gwaii Haanas National Park Reserve and Haida Heritage Site, and UWBM=University of Washington Burke Museum. GenBank numbers correspond to cyt b, and each phased allele for M. longicaudus (ETS2, FGB and Rag1), Peromyscus (FGB, IRBP and Zp3) and S. monticola (ADH2, ApoB and FGB) respectively, –= not applicable. GenBank in bold were obtained from other studies.
Appendix IX - Between group net genetic divergences of cyt b among refugial and non-refugial Southeast Alaskan populations lineages of M. longicaudus, P. keeni and S. monticola. The number of base differences per site from estimation of net average between groups of sequences is shown. Standard error estimate(s) are shown above the diagonal. All ambiguous positions were removed for each sequence pair. Evolutionary analyses were conducted in MEGA5.
DOI: 10.5061/dryad.p0h2678/1
title: Raw data all plots 1952-2017

description: Contains raw information on trees &gt;10 cm DBH for each plot (i.e DYP 9) including
Tree ID, tree species, measurement year, diameter at breast height (1.3m),
calculated basal area, DBH size class, X and Y coordinates within plots (40m x 100m).
DOI: 10.5061/dryad.p0h2678/2
title: Raw data all plots understory 2017

description: Contains raw information on trees &lt;10 cm DBH for each plot including:
Tree ID, tree species, DBH &lt;10cm, plot number, measurement year.
DOI: 10.5061/dryad.p0h2678/3
title: linear mixed effects model dataset

description: Contains data on Shannons index, simpsons, evenness, year of measurement, plot ID, and section within plot for running linear mixed effects model on R.
DOI: 10.5061/dryad.p0h2678/4
title: linear mixed effects model code

description: Contains R codes for running diversity indices and linear mixed effects model
DOI: 10.5061/dryad.p0h2678/5
title: multivariate analyses codes

description: Contains R codes for running nMDS, betadisper, PERMANOVA, and pairwise adonis analyses.
DOI: 10.5061/dryad.p65mc58/54
title: LNG0071_R1.fq

description: Raw Illumina reads for LNG0071
DOI: 10.5061/dryad.p65mc58/55
title: LNG0094_R1.fq

description: Raw Illumina reads for LNG0094