cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7272/q6fx77ng
title: Qualitative survey instruments for a study on equity from a large-scale private-sector healthcare intervention in Ghana and Kenya: the African Health Markets for Equity (AHME) study

description: The African Health Markets for Equity (AHME) Initiative took place in
 Ghana and Kenya for seven years beginning in 2012. AHME applied four
 linked interventions to increase access and use of quality healthcare for
 common childhood and adult illnesses, working with private providers in
 peri-urban areas. The four interventions included social
 franchsing, quality accreditation, business loans and
 training, and support for empanellment with the national
 health insurance scheme in each country. The qualitative study of
 AHME looked at a number of components of the overall intervention,
 including access and use of services, particularly among low income
 populations. Our findings on the priorities of patients at AHME sites
 gives insights into what mattered most to patients, and ways in which the
 AHME initiative did and did not address those priorities effectively.
description: NA
description: Restrictions within our consent forms prohibit the sharing of
 transcripts or data from qualitative interviews outside of research study
 team members.  As a result, we attach here the consent forms and survey
 tools used, but not the collected data.  Minor changes occured to forms
 over differnt rounds of collection and so multiple versions of forms are
 included reflecting this.
DOI: 10.5061/dryad.sqv9s4n1w
title: Supplemental material for: Growth curves for children with X-linked hypophosphatemia"

description: Context: We characterized linear growth in infants and children with
 X-linked hypophosphatemia (XLH). Objective: Provide linear growth curves
 for children with XLH from birth to early adolescence. Design: Data from
 four prior studies of XLH were pooled to construct growth curves.
 UX023-CL002 was an observational, retrospective chart review.
 Pre-treatment data were collected from three interventional trials: two
 phase 2 trials (UX023‑CL201, UX023‑CL205) and a phase 3 trial
 (UX023-CL301). Setting: Medical centers with expertise in treating XLH.
 Patients: Children with XLH, 1-14 years of age. Intervention: None. Main
 Outcome Measure: Height-for-age linear growth curves including values for
 the 5th, 10th, 25th, 50th, 75th, 90th, and 95th percentiles for children
 with XLH compared to population norms.  Results: 228 patients
 (132 girls, 96 boys) with 2,381 height measurements were included. Nearly
 all subjects (&gt;99%) reported prior management with supplementation
 therapy. Compared to the CDC growth curves, boys at age 0.25, 0.50, 0.75,
 1.0, and 2.0 years-old had median height percentiles of 46%, 37%, 26%,
 18%, and 5%, respectively; for girls the median height percentiles were
 52%, 37%, 25%, 18%, and 7%, respectively. Annual growth in children with
 XLH fell below that of healthy children near 1 year of age and
 progressively declined during early childhood, with all median height
 percentiles &lt;8% between 2 and 12 years old. Conclusion: Children
 with XLH show decreased height gain by 1 year of age and remain below
 population norms thereafter. These data will help evaluate therapeutic
 interventions on linear growth for pediatric XLH.
DOI: 10.5061/dryad.12jm63xvj
title: A Hirnantian holdover from the late Ordovician mass extinction: phylogeny and biogeography of a new Anthracocrinid crinoid from Estonia

description: Relatively few Hirnantian (Late Ordovician) crinoids are known, and none
 have been previously described from the palaeocontinent of Baltica. This
 has impaired our ability to understand patterns of extinction and
 biogeographic dispersal surrounding the Late Ordovician mass extinction,
 which triggered a major turnover in crinoid faunas. Here, we describe
 Tallinnicrinus toomae gen. et sp. nov., an anthracocrinid diplobathrid
 from the Hirnantian of northern Estonia. Tallinnicrinus is the youngest
 member of the Anthracocrinidae and the first representative of the family
 to occur in Baltica. Morphologically, Tallinnicrinus is unusual in that
 the radial and basal plates are in a single circlet of ten plates, similar
 to the anthracocrinid Rheocrinus Haugh, 1979 from the Katian of Laurentia.
 Phylogenetic analysis further confirms a close relationship between
 Tallinnicrinus and Laurentian anthracocrinids, suggesting biogeographic
 dispersal of the lineage from Laurentia to Baltica during the late Katian
 or early Hirnantian. The occurrence of this new taxon establishes that the
 family Anthracocrinidae survived the first pulse of the Late Ordovician
 mass extinction. However, the lineage remained a “dead clade walking” as
 it failed to diversify in the wake of the end-Katian extinction and
 ultimately went extinct itself by the end of the Ordovician.
description: This dataset includes the character matrices and scripts to
 reproduce the phylogenetic analyses presented in the paper, including both
 the the parsimony analysis in PAUP* v4.0a167 (Parsimony_analysis.nex) and
 the Bayesian analysis in Mr. Bayes v3.2.6 (Bayesian_analysis.nex). Results
 from the phylogenetic analyses are included as nexus files for both the
 parsimony analysis (Parsimony_results.nex, which includes the 2
 most-parsimonious trees recovered) and the Bayesian analysis
 (Bayesian_results.nex, which includes the maximum clade credibility and
 50% majority rule trees). All .nex files can be opened with standard text
 editor programs. The Supplemental_Materials.pdf file
 includes descriptions of data files and figures showing the Bayesian
 maximum clade credibility tree and the 50% majority rule tree.
DOI: 10.5061/dryad.d51c5b00k
title: Morphometric Response of Galaxias maculatus (Jenyns) to Lake Colonization in Chile

description: Body and head shape in fish responds to environmental factors such as
 water flow rate, food sources, and niche availability. However, the way in
 which fish respond to these environmental factors varies. In Central
 Chile, multiple river and lake systems along the coast provide an ideal
 study site to investigate these types of shape changes. We use geometric
 morphometrics to characterize shape differences in Galaxias maculatus
 (Jenyns) between river and lake populations. Lake fish converge on a shape
 with a more fusiform body, narrower head, and larger eyes, while river
 fish have a more robust body, rounder head, and smaller eyes. These shape
 changes are consistent with a shift to zooplanktivorous foraging in lakes,
 as evidenced in other systems. Unlike some fish species that develop
 polymorphisms in body shape after colonization (e.g., benthic and limnetic
 forms), G. maculatus in lakes exhibit a monomorphic limnetic form.
  
description: Collections were done under the auspices of Dirección de
 Investigación, Universidad de Concepción, following Institutional Animal
 Care and Use Committee (IACUC) protocols. Specimens were collected with
 seines and backpack electrofishing equipment and euthanized with an
 overdose of BZ-20 (20% ethylp-aminobenzoate). The body and head of each
 freshly-killed fish were photographed from the left lateral view for
 morphometric analysis. Using the program tpsDig, we digitized 10 landmarks
 and semi-landmarks on each body photograph, and 11 landmarks and
 semi-landmarks on each head photograph.  The program
 tpsRelW was used to generate shape variables. A generalized Procrustes
 analysis was used to remove non-shape variation. We used a multivariate
 linear mixed model to determine the effects of our variables (river or
 lake environment and centroid size) on <em>Galaxias
 maculatus</em> shape variation. Proc MIXED in SAS was used to run
 all analyses (SAS version 9.4, SAS Institute Inc., Cary NC,
 USA).
description: ReadMe file titled README_DataMercer2020.txt contains the
 necessary information for re-use.
DOI: 10.5281/zenodo.18395438
title: Isotopic data of zircon U−Pb dating from the Ryoke Plutonic Rocks in the eastern Kii Peninsula, SW Japan

description: Dataset includes Isotopic data of zircon U−Pb dating from the Ryoke Plutonic Rocks in the eastern Kii Peninsula, SW Japan.

An open file in “1. Sampling locality data” are latitude and longitude data of sampling localities of the Ryoke Plutonic Rocks analyzed zircon U−Pb dating. 

An open files in "2. Isotopic data" are isotopic data of zircon U−Pb dating of the Ryoke Plutonic Rocks in the eastern Kii Peninsula, AW Japan

All open file data have been used in Takeuchi et al. (submitted to Geology of Nyu District. Quadrangle Series, 1:50,000, Geological Survey of Japan), Higaki et al. (preparing to submit to Journal of the Geological Society of Japan) and Li et al. (preparing to submit to Island Arc).
DOI: 10.5281/zenodo.18395439
title: Isotopic data of zircon U−Pb dating from the Ryoke Plutonic Rocks in the eastern Kii Peninsula, SW Japan

description: Dataset includes Isotopic data of zircon U−Pb dating from the Ryoke Plutonic Rocks in the eastern Kii Peninsula, SW Japan.

An open file in “1. Sampling locality data” are latitude and longitude data of sampling localities of the Ryoke Plutonic Rocks analyzed zircon U−Pb dating. 

An open files in "2. Isotopic data" are isotopic data of zircon U−Pb dating of the Ryoke Plutonic Rocks in the eastern Kii Peninsula, AW Japan

All open file data have been used in Takeuchi et al. (submitted to Geology of Nyu District. Quadrangle Series, 1:50,000, Geological Survey of Japan), Higaki et al. (preparing to submit to Journal of the Geological Society of Japan) and Li et al. (preparing to submit to Island Arc).
DOI: 10.15468/dl.vgje4m
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "CatalogNumber" : [
 "is one of (K-M000122088, K-M000178414, K-M000193564, K-M000195450, K-M000202913, K-M000202914, K-M000202919, K-M000235254, K-M000235264, K-M000771046, K-M000771047, K-M000817272, K-M000817273, K-M000819353, K-M000820808, K-M000822722, K-M000822726, K-M000822842, K-M000949144, K-M000954750)"
 ]
}

 The dataset includes 20 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002435-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.r2280gbb4
title: Experimental evidence that hyperthermia limits offspring provisioning in a temperate-breeding bird

description: In many vertebrates, parental care can require long bouts of daily
 exercise, that can span several weeks. Exercise, especially in the heat,
 raises body temperature, and can lead to hyperthermia. Typical strategies
 for regulating body temperature during endurance exercise include
 modifying performance to avoid hyperthermia (anticipatory regulation
 hypothesis) and allowing body temperature to rise above normothermic
 levels for brief periods of time (facultative hyperthermia hypothesis).
 Facultative hyperthermia is commonly employed by desert birds to economize
 on water, but this strategy may also be important for chick-rearing birds
 to avoid reducing offspring provisioning when thermoregulatory demands are
 high. In this study, we tested how chick-rearing birds balance their own
 body temperature against the need to provision dependent offspring. We
 experimentally increased the heat dissipation capacity of breeding female
 tree swallows (Tachicyneta bicolor) by trimming their ventral feathers,
 and remotely monitored provisioning rates, body temperature, and the
 probability of hyperthermia. Birds with an experimentally increased
 capacity to dissipate heat (i.e., trimmed treatment) maintained
 higher feeding rates than controls at high ambient temperatures ( ≥ 25
 ºC), while maintaining lower body temperatures. However, at the highest
 temperatures (≥25 ºC) trimmed individuals became hyperthermic. These
 results provide evidence that chick-rearing tree swallows use both
 anticipatory regulation and facultative hyperthermia during endurance
 performance. With rising global temperatures, individuals may need to
 increase their frequency of facultative hyperthermia to maintain nestling
 provisioning, and thereby maximize reproductive success.
description: The attached files contain the necessary descriptions for
 understanding and working with data used in the construction of Tapper et
 al. 2020 (Royal Society Open Science). The RSOS_dryad_readme.docx file
 contains descriptions of each file name attached to this data repository,
 and descriptions of the data contained within each column of a data file.
 Information pertaining to the R code, which has been provided in this data
 repository as a .Rmd (R Markdown) file, has not been provided within this
 readme file, because necessary descriptions for understanding our code are
 provided within the R code file itself.
DOI: 10.5061/dryad.p8cz8w9mz
title: From the leaf to the community: distinct dimensions of phytochemical diversity shape plant-insect interactions within and among individual plants

description: Plant secondary chemistry is known to be an important driver of
 plant-insect community structure across ecological scales. Recently, the
 concept of phytochemical diversity has been introduced to help describe
 variation in plant secondary chemistry and explain how this variation
 affects community structure. Previous studies show that phytochemical
 diversity among individuals and species results in phytochemical mosaics,
 known as the phytochemical landscape. However, plant traits can vary at
 finer scales, such as within individuals, and even a single host plant may
 be perceived as an entire phytochemical landscape by an interacting
 insect. Using the neotropical shrub Piper amalago, we tested and compared
 how herbivory, caterpillar biodiversity and plant-herbivore network
 structure are affected by the compositional (number and concentration of
 compounds) and structural (diversity of distinct chemical structures)
 dimensions of phytochemical diversity. We analysed variation among
 individual plants and among plant height strata within individual plants.
 This allowed us to decompose phytochemical diversity within and among
 plant individuals and analyse how variation at both scales affects the
 plant-herbivore network. We found that both within and among plants
 greater structural diversity decreased herbivore feeding damage.
 Furthermore, each dimension of phytochemical diversity has different
 effects on herbivore biodiversity and network structure depending on the
 scale of biological organization. Within plants, the compositional
 dimension, specifically low concentrations of compounds tentatively
 identified as Piper amides, increased herbivore biodiversity. This
 dimension also increased the capacity of strata within plants to mediate
 ecological cascades through direct and indirect effects on herbivore
 abundance in the plant-herbivore network. In contrast, a greater
 structural diversity among-plants decreased herbivore biodiversity and the
 capacity of plants to affect all other herbivores and plants directly and
 indirectly in the network. Synthesis: Based on our results we expand the
 concept of the phytochemical landscape to multiple scales of biological
 organization and provide evidence that phytochemical diversity may be
 maintained by how its multiple dimensions have distinct roles across
 scales of biological organization.
description: See Cosmo et al. 2021. Journal of Ecology.
description: See
 "README_Cosmo_et_al_phytochemical_diversity.txt"
DOI: 10.5061/dryad.2280gb5pm
title: Data from: Social bonds do not mediate the relationship between early adversity and adult glucocorticoids in wild baboons

description: In humans and other animals, harsh conditions in early life can have
 profound effects on adult physiology, including the stress response. This
 relationship may be mediated by a lack of supportive relationships in
 adulthood. That is, early life adversity may inhibit the formation of
 supportive social ties, and weak social support is itself often linked to
 dysregulated stress responses. Here we use prospective, longitudinal data
 from wild baboons in Kenya to test the links between early adversity,
 adult social bonds, and adult fecal glucocorticoid hormone concentrations
 (a measure of hypothalamic-pituitary-adrenal (HPA) axis activation and the
 stress response). Using a novel causal inference framework, we found that
 experiencing one or more sources of early adversity led to a 9-14%
 increase in females’ glucocorticoid concentrations across adulthood.
 However, these effects were not mediated by weak social bonds: the direct
 effects of early adversity on adult glucocorticoid concentrations were 11
 times stronger than the effects mediated by social bonds. This pattern
 occurred, in part, because the effect of social bonds on glucocorticoids
 was weak compared to the powerful effects of early adversity on
 glucocorticoid levels in adulthood. Hence, in female baboons, weak social
 bonds in adulthood are not enough to explain the effects of early
 adversity on glucocorticoid concentrations. Together, our results support
 the well-established notions that early adversity and weak social bonds
 both predict poor adult health. However, the magnitudes of these two
 effects differ considerably, and they may act independently of one
 another.
description: Readme file in first worksheet of workbook
DOI: 10.5061/dryad.zcrjdfn8d
title: Data from: Anthropogenic noise reduces male reproductive investment in an acoustically signaling insect

description: Rapidly changing environments impose novel selection pressures on
 organisms, and sometimes adaptive phenotypic plasticity allows
 organisms to survive and reproduce in the face of environmental change.
 However, plastic responses can also be maladaptive. In this study, we
 investigate whether male reproductive investment responds plastically to
 varied experience with traffic noise. We exposed male crickets chronically
 to one of three noise treatments from the 2nd-3rdinstar until their
 natural death: masking traffic noise (including noise that overlaps in
 frequency with the male crickets’ mating calls), non-masking traffic noise
 (an identical traffic noise track from which we digitally removed the
 frequencies that mask the crickets’ mating call), and silence. We
 dissected and weighed their testes and spermatophore molds. Controlling
 for body mass, we found that the spermatophore molds of crickets reared in
 masking and non-masking noise were 29% and 24% lighter, respectively, than
 those of crickets reared in silence There were no differences in body mass
 adjusted testes mass among treatments. If spermatophore mold mass is
 positively associated with male reproductive output, this reduction in
 size could have negative fitness consequences for animals exposed to
 traffic noise. We encourage future work to investigate impacts of noise on
 reproductive investment in other study systems that are likely sensitive
 to anthropogenic noise (e.g., birds, frogs, singing insects).
DOI: 10.6078/d1qq5x
title: Data from: Aridity drives coordinated trait shifts but not decreased trait variance across the geographic range of eight Australian trees

description: Large intraspecific functional trait variation strongly impacts many
 aspects of communities and ecosystems, and is the medium upon which
 evolution works. Yet intraspecific trait variation is inconsistent and
 hard to predict across traits, species, and locations. We measured
 within-species variation in leaf mass per area (LMA), leaf dry matter
 content (LDMC), branch wood density (WD), and allocation to stem area vs.
 leaf area in branches (branch Huber value, HV) across the aridity range of
 seven Australian eucalypts and a co-occuring Acacia species to explore how
 traits and their variances change with aridity. Within-species, we found
 consistent increases in LMA, LDMC and WD, and HV with increasing aridity,
 resulting in consistent trait coordination across leaves and branches.
 However, this coordination only emerged across sites with large climate
 differences.  Unlike trait means, patterns of trait variance with
 aridity were mixed across populations and species. Only LDMC showed
 constrained trait variation in more xeric species and drier populations
 that could indicate limits to plasticity or heritable trait variation. Our
 results highlight that climate can drive consistent within-species trait
 patterns, but that these patterns might often be obscured by the complex
 nature of morphological traits, sampling incomplete species ranges, or
 sampling confounded stress gradients.
description: Full methods in paper text. Scripts for
 analysis and figures reported in paper are available at: https://github.com/leanderegg/EucTraits Additional scripts to generate plot attribute data (e.g. climate and soil attribute extraction) available upon request (email Leander Anderegg, leanderegg@gmail.com).
description: Consistes of 5 .csv files: Metadata.csv - data
 descriptions for other .csvs
 TraitsAll_Branch_20200701.csv - quality controled branch-level
 trait data, tree attributes and plot-level climate data collected across
 the aridity range of seven eucalypt species and one Acacia species along
 two aridity gradients in Western Astralia and Tasmanai.
 Soils_Summareis0-60cm_20200701.csv - plot-level soil properties
 derived from the Soil and Landscape Grid of Australia, then averaged
 across the 0cm-60cm depth. Resid_Patterns_2020-526.csv
 - summary of residual variance patterns with aridity (# of species showing
 patterns) for each of 4 traits (used for creating Fig 6 in Anderegg et al.
 2020) Climate_Quantiles_allspp_20200701.csv - metrics
 of focal species climate niche quantified by various quantiles of the
 climate of their occurance records downloaded from the Atlas of Living
 Australia.
DOI: 10.5061/dryad.rn8pk0p71
title: Sustainable harvesting and conservation of Laelia furfuracea, a rare epiphytic orchid from Oaxaca, Mexico

description: Many epiphytic orchids are harvested in Mexico for different purposes.
 Laelia furfuracea is one of the most intensively traded species. Its
 inflorescences are used as ornaments during the December festivities. We
 investigated the effect of severing the flowering pseudobulb. This is the
 traditional technique frequently used by collectors at the study area. We
 wished to investigate its effects on the production of new pseudobulbs, as
 well as on their size and flowering probability. Also, we examined the
 survival probability and growth of individuals that had fallen on the
 ground to evaluate their potential as trading resources. Inflorescence
 collection did not affect the production of new pseudobulbs the following
 season. However, it affected the size of these pseudobulbs, as well as
 their flowering probability. Yet, the direction of this effect was not
 consistent between years. Nearly six percent of all L. furfuracea plants
 at the study site were found on the ground. Over 80 percent of them
 survived for at least two years, although most of them showed pseudobulb
 loss over that period of time. We conclude that harvesting of flowering
 pseudobulbs may be sustainable in terms of its effects on plant
 performance, at least in the short term. The active management of plants
 that have fallen on the ground may reduce the harvesting pressure on
 natural populations. Harvesting of flowering pseudobulbs may diminish some
 aspects of plant performance, but its effects need to be evaluated with
 complete life cycle data and take into account interannual variation in
 vital rates.