cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/rfqq0-5j180
title: in vitro assembled CA-NC cones

description: Raw data files of in vitro assembled CA-NC cones
description: <strong>Tilt Series Date:</strong> 2008-06-11</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> in vitro assembled HIV CA-NC cones</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-68.0°, 70.0°), step: 2°, constant angular increment, dosage: 60.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2008-06-11-4/rawdata/</p>samp3_sq15_h01_41k01.mrc,  Tilt Series (Pixel Size 0.52 nm), 578.9 MB  
        
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        samp3_sq15_h01_bin2_full.rec,  Reconstruction (Pixel Size 1.04 nm) bin 2, 415.2 MB  
        
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        samp3_sq15_h01_bin2_rec_cut1_bnad_0050.mrc,  21.2 MB  
        
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        samp3_sq15_h01_bin2_rec_cut2_bnad_0050.mrc,  22.5 MB  
        
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        samp3_sq15_h01_bin2_rec_cut3_bnad_0050.mrc,  3.3 MB  
        
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        samp3_sq15_h01_bin2_rec_cut3_bnad_0050_cone1.mrc,  817.8 kB  
        
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DOI: 10.22002/qwg3y-pz579
title: Hn in 5% CO2

description: H. neapolitanus cell h2 in 5% CO2
description: <strong>Tilt Series Date:</strong> 2007-09-20</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth in 5% CO2</p>
  civ2007-09-20-2_slicer5605.jpg: periplasmic vesicle? civ2007-09-20-2_slicer5606.jpg: periplasmic vesicle civ2007-09-20-2_slicer5607.jpg: peptidoglycan
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-20-2/rawdata/</p>Hn0h_h2_180e12um18K_20sept07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
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        Hn0h_h2_180e12um18K_20sept07_bin1.rec,  Reconstruction (Pixel Size 0.0 nm), 388.0 MB  
        
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        Hn0h_h2_180e12um18K_20sept07_bin2_s111_filam2.tif,  954.9 kB  
        
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        Hn0h_h2_180e12um18K_20sept07_bin2_s101_filam1.tif,  954.9 kB  
        
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        Hn0h_h2_180e12um18K_20sept07_bin2_s72_cell.tif,  954.9 kB  
        
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        Hn0h_h2_180e12um18K_20sept07_bin2_5ave_rec.mov,  file associated to 3D Image #3996, 10.3 MB  
        
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DOI: 10.20350/digitalcsic/17516
title: UNPUR-PUR DATA COMPILATION
title: Ocean acidification at the crossroads I: harmonizing unpurified and purified meta cresol purple spectrophotometric pH measurements based absorbance data

description: Consistent monitoring of seawater spectrophotometric pH on the total hydrogen ion scale (pHT) has been challenged by an evolving method, with changes in formulation and the purity of the meta-cresol purple (mCP). Critically, the method still lacks metrological traceability to the International System of Units (SI). Using real seawater samples, we demonstrate that spectrophotometric pHT measurements obtained with unpurified (UNPUR) and purified (PUR) mCP can be harmonized to within 0.003 pH units, the climate-goal threshold. This level of agreement is only achieved when mCP impurities are quantified for both the UNPUR and PUR mCP, and impurity-corrected absorbance data is used in the same formulation to calculate pHT. We applied this approach to a ship-based pHT time-series that transitioned from UNPUR to PUR mCP measurements, achieving agreement better than 0.003 pHT units. Our results show that previous claims suggesting that UNPUR mCP underestimates pHT in the upper pH range are misleading, as they were based on the inappropriate use of absorbances obtained with UNPUR mCP with a formulation developed for PUR mCP. In fact, our data reveal better agreement between UNPUR and PUR pHT in the upper pH range, while UNPUR mCP tends to overestimate pHT in the lower pH range. These findings highlight the urgent need for the global chemical oceanography community to establish a spectrophotometric pHT method with full SI traceability, along with certified reference materials and characterized mCP. This work supports the need for harmonization efforts to ensure the reliability of pHT data in global synthesis products.
DOI: 10.22002/5c70r-2g784
title: Hn in normal conditions

description: H. neapolitanus cell h8 in normal conditions
description: <strong>Tilt Series Date:</strong> 2005-11-23</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth in normal conditions</p>
  civ2005-11-23-2_slicer5966.jpg: Unknown filament civ2005-11-23-2_slicer5967.jpg: Unknown filament civ2005-11-23-2_slicer5969.jpg: Unknown filament
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2005-11-23-2/rawdata/</p>h8_Hncell_190e_15um_23nov05.mrc,  Tilt Series (Pixel Size 0.98 nm), 1.0 GB  
        
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        h8_190e_22K_15um_bin1.rec,  Reconstruction (Pixel Size 0.98 nm), 678.1 MB  
        
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        h8_cbxy1.tiff,  964.5 kB  
        
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        h8_cbxy2.tiff,  956.4 kB  
        
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        h8_ali.mov,  file associated to 3D Image #4004, 21.5 MB  
        
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        h8_ave10_rec.mov,  file associated to 3D Image #4004, 161.4 MB  
        
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DOI: 10.22002/1htsy-47q34
title: Hn limited in CO2 for 3 hrs

description: H. neapolitanus cell h4 limited in CO2 for 3 hoursKeywords: carboxysomes, irregular
description: <strong>Tilt Series Date:</strong> 2007-04-17</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth limited in CO2 for 3 hours</p>
  civ2007-04-17-4_slicer4725.jpg: Pilli civ2007-04-17-4_slicer4726.jpg: DNA supercoilcomb
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-04-17-4/rawdata/</p>Hn3h4_180e_12um_apr17_07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
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        Hn3h4_180e_12um_apr17_07_bin1.rec,  Reconstruction (Pixel Size 1.259 nm), 285.6 MB  
        
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        Hn3h4_s101_filam.tiff,  159.8 kB  
        
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        Hn3h4_s62_ATPases.tiff,  179.4 kB  
        
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        Hn3h4_180e12um_5ave_rec_bin2.mov,  file associated to 3D Image #4036, 8.6 MB  
        
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        Hn3h4_180e12um_10ave_rec_bin1.mov,  file associated to 3D Image #4036, 17.8 MB  
        
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DOI: 10.15468/dl.rdnted
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bugula neritina",
 "Country is Egypt",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030498-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/1e2sz-kg120
title: E.cloacae minicell typeVCDI- #90

description: Raw data files of E.cloacae minicell typeVCDI- #90
description: <strong>Tilt Series Date:</strong> 2015-06-05</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 2.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -15.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Chris Hayes and David Low</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-05-8/rawdata/</p>ps94-tomo0009.mrc,  Tilt Series (Pixel Size 0.331 nm), 1.8 GB  
        
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        ps94-tomo0009_part67_5.rec,  Reconstruction (Pixel Size 1.324 nm), 430.6 MB  
        
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        psa2015-06-05-8_slicer19364.png, , 966.5 kB  
        
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        psa2015-06-05-8_slicer19365.png, , 960.1 kB  
        
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        psa2015-06-05-8_slicer19366.png, , 965.0 kB  
        
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        psa2015-06-05-8_slicer19367.png, , 970.4 kB  
        
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DOI: 10.15468/dl.9q2qh8
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crenicichla mucuryna)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030499-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/efbtf-77490
title: archaeon

description: ultrastructure, dark matter
description: <strong>Tilt Series Date:</strong> 2007-08-02</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> Nitrosopumilus maritimus</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-70.0°, 70.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2007-08-02-3/rawdata/</p>Archia07-802_sam1_sq05_h02_41k.st,  Tilt Series (Pixel Size 0.54 nm), 604.0 MB  
        
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        Archia07-802_sam1_sq05_h02_41k_full.rec,  Reconstruction (Pixel Size 1.08 nm), 3.6 GB  
        
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        Archia07-802_sam1_sq05_h02_41k_rec_trim_bin2_cut_bnad25.mrc,  surface view of dark matter, 31.2 MB  
        
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        Archia07-802_sam1_sq05_h02_41k_rec_trim_bin2_cut_bnad25_cut.mrc,  3.9 MB  
        
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        sam1sq05h02_bin2band25_view1.png,  410.1 kB  
        
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DOI: 10.15468/dl.5ekcez
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chenonetta jubata",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030501-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/w8f4w-qjd50
title: archaeon

description: ultrastructure, dark matter
description: <strong>Tilt Series Date:</strong> 2007-08-02</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> Nitrosopumilus maritimus</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-70.0°, 70.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2007-08-02-2/rawdata/</p>Archia07-802_sam1_sq04_h05_41k.st,  Tilt Series (Pixel Size 0.54 nm), 604.1 MB  
        
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        Archia07-802_sam1_sq04_h05_41k_full.rec,  Reconstruction (Pixel Size 1.08 nm), 2.7 GB  
        
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        Archia07-802_sam1_sq04_h05_41k_rec_trim_cut_bnad25.mrc,  surface view of dark matter, 89.8 MB  
        
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        Archia07-802_sam1_sq04_h05_41k_rec_trim_cut_bnad25_cut.mrc,  2.7 MB  
        
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        sam1sq04h05_bin2band25_view1.png,  438.6 kB  
        
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