cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.246qg/5
title: ExponentialCorrNoise

description: Exponentially correlated stimuli used in experiments.  See README.txt associated with Data.zip.
DOI: 10.5061/dryad.246qg/6
title: NaturalStimuli

description: Natural movie and scrambled natural movie stimuli used in experiments.  See README.txt associated with Data.zip.
DOI: 10.5061/dryad.246qg/7
title: WhiteNoise

description: White noise checkerboard stimuli used in experiments.  See README.txt associated with Data.zip.
DOI: 10.5061/dryad.3271mn17/1
title: Data_MER120022R1

description: To evaluate the utility of different methods for genetic barrier detection, we used data sets from Landguth et al. (2010), who conducted spatially–explicit, individual–based genetic divergence simulations in the program CDPOP (Landguth & Cushman 2010). Landguth et al. (2010) simulated genotypes for 1 000 individuals of an animal species within a study landscape of 70 x 100 km. Simulations were initiated with 30 loci and 30 alleles maximum per locus (resulting in 900 total possible alleles and mean Ho = 0.967), a k–allele mutation rate of 0.0005 in a two–sex mating structure with sex assigned randomly with equal probability (see Landguth et al. 2010 for details). Landscape resistances to movement were homogeneous and controlled by isolation-by-distance on either side of a complete (i.e., impermeable) linear barrier that bisected the landscape into a western and eastern half (500 individuals on either side). We used data from 10 independent Monte Carlo simulations and under two dispersal distances. In the first scenario (10k), the maximum simulated dispersal distance was 10 kilometres, while in the second scenario (60k) the dispersal distance was set to 60 kilometres. These scenarios use the two most extreme dispersal distances simulated by Landguth et al. (2010) and correspond to species exhibiting short– versus long–range dispersal relative to the spatial extent of the study area. Because we were interested in testing the performance of methods for inferring recent barriers to gene flow, we applied the methods only to the first 20 generations after barrier imposition. There are then 20 generations of raw genotypes for each individual stored in files called grid{generation}.csv. In addition, genetic distance matrices are calculated for each generation using proportion of shared alleles and stored in files called Gdmatrix{generation}.csv.
DOI: 10.5061/dryad.416b8/2
title: SNP data for 49 fragments of coding DNA in 31 genes sequenced for wild Bicyclus anynana populations

description: This file contains SNP data for 49 sequence fragments in 31 genes, for six wild Bicyclus anynana populations. Columns are: population code ('population'); population latitude ('latitude'); abbreviated gene name ('gene name'); Genbank ID ('genbank ID'); SNP position on the sequence fragment ('SNP position'); SNP type, S=synonymous, NS= non-synonymous ('SNP type'); nucleotide base of allele 1 ('allele 1'); nucleotide base of allele 2 ('allele 2'); population allele frequency for nucleotide A ('freq A'); population allele frequency for nucleotide C ('freq C'); population allele frequency for nucleotide G ('freq G'); population allele frequency for nucleotide T ('freq T'). Note that there can be several sequenced fragments per gene, and each fragment has a unique Genbank ID. For more information on the sequenced fragments and for full gene names see also Table S1 in the Supplementary Online Material of the publication. For full population names and location information see the location and sampling details file in this Dryad entry.
DOI: 10.5061/dryad.4hs71t6t/1
title: Gopherus_ND4

description: Nexus file used in the phylogenetic analyses.
DOI: 10.5061/dryad.4hs71t6t/2
title: Gopherus_ND4_AMOVA_Model_01

description: Arlequin file for AMOVA model 1 - Tombigbee/Mobile split (see Table 4)
DOI: 10.5061/dryad.4hs71t6t/3
title: Gopherus_ND4_AMOVA_Model_02

description: Arlequin file for AMOVA model 2 - Apalachicola/Flint split (see Table 4)
DOI: 10.5061/dryad.4pd30/1
title: MA_wings

description: Data file of wing shape and size traits from two sexual selection treatments collected in three generations of a mutation accumulation experiment
DOI: 10.5061/dryad.4pd30/2
title: Forster_wings

description: Wing shape and size data from a half-sib breeding design conducted in a population of Drosophila serrata sharing a common ancestor with the mutation accumulation lines
DOI: 10.5061/dryad.4pd30/3
title: Productivity

description: Line mean productivity data from MA lines extant in generation 27
DOI: 10.5061/dryad.4qb53/1
title: List of genotypes of buccal, skin and cloaca swabs

description: This file is a supplement for the publication “Pros and cons of external swabbing of amphibians for genetic analysis” by Müller A., Lenhardt P. and Theissinger K (2013). The file shows the dataset and includes three tables. Two tables show all repetitions of each sample, each table for one multiplex set (Set 1: 66, 151, 130; Set 2: 82, 99, 160, 145, 129). The third table shows genotypes of all samples and all loci without repetitions.The tables are compiled as follows: The first column contains the individual numbers and the second column contains the kind of swab sample (B: Buccal swab, S: Skin swab, C: Cloaca swab). From column three the alleles per loci are listed. Real genotypes are printed in bold, false alleles in red and allelic drop outs in blue.
DOI: 10.5061/dryad.620cq/1
title: stemBorer_data_nofilter
DOI: 10.5061/dryad.620cq/2
title: SAP.filteredSNP.imp.all.hmp

description: Genotyping-by-sequencing genotypes for the Sorghum Association Panel, imputed using TASSEL
DOI: 10.5061/dryad.68k7g/1
title: All_JB_soil_data

description: Bacterial 16S rRNA and fungal ITS amplicon pyrosequencing data of rhizosphere and bulk soil microbial communities beneath Japanese barberry plants in Maine.
DOI: 10.5061/dryad.7c9q7/1
title: Relative sensilla number, mandible wear, and aggression index in green tree ants

description: These data describe the results of aggression bioassays conducted in the field (James Cook University, Townsville, Queensland) and subsequent morphological measures of the focal ant, including the number of sensilla on the antennae of the condition of the mandible
DOI: 10.5061/dryad.868sm/38
title: 3D model of Wiwaxia infant (Fig. 6A)

description: 3D model file used to generate Figure 6A.  Blender file format (blender.org).
DOI: 10.5061/dryad.868sm/39
title: 3D model of Wiwaxia juvenile (Fig. 6B)

description: 3D model file used to generate Figure 6B.  Blender file format (blender.org).
DOI: 10.5061/dryad.868sm/40
title: 3D model of mature Wiwaxia (Fig. 6C)

description: 3D model file used to generate Figure 6C.  Blender file format (blender.org).
DOI: 10.5061/dryad.868sm/41
title: NMNH 200101 (Fig. 7A) – "moulting" specimen

description: Note that gut (pinker) can be traced along length of specimen.  Mouthparts are only visible in the anterior of the specimen.
DOI: 10.5061/dryad.868sm/42
title: NMNH 200101 (Fig. 7A) – Interference image

description: Interference image highlights distinct preservation of gut, confirming its continuity into the posterior of the specimen.  The pronounced nature of the mouthparts heightens confidence that there are genuinely no mouthparts further posteriad.
DOI: 10.5061/dryad.868sm/43
title: NMNH 200101 – SEM of anterior region showing mouthparts

description: Mouthparts stand out as carbon films.
DOI: 10.5061/dryad.868sm/44
title: NMNH 200101 – SEM of posterior region

description: Sclerites are picked out by faint pyrite layer, but carbonaceous mouthparts are demonstrably absent.
DOI: 10.5061/dryad.868sm/45
title: ROM 61701 (Fig. 7B) – showing axial trace (gut)
DOI: 10.5061/dryad.868sm/46
title: ROM 61515 (Fig. 7C) – Odontogriphus
DOI: 10.5061/dryad.bb312/1
title: Data from Invasion genetics of the introduced black rat (Rattus rattus) in Senegal, West Africa

description: 2 files comprising Rattus rattus microsatellite data and scripts used for Approximate Bayesian Computation analyses
DOI: 10.5061/dryad.c4j84/1
title: Genetic_data

description: Individual ID, management unit, and allele scores for 15 loci (in the 6 digit format)
DOI: 10.5061/dryad.ck2cm/1
title: Phenotypic measurements of Timema cristinae

description: File contains all the raw phenotypic measurements for all individuals included in the genome-wide association mapping analyses ("individual" begins with "FHA") and the same measurements for individuals collected from two additional populations ("individual" begins with "VPC" or "HVA").
DOI: 10.5061/dryad.ck2cm/2
title: Tcris_fin_mod_snpcntII.txt

description: File contains variant counts (snp calling) for each individual. This file was used to estimate genotype probabilities that were ultimately used to generate the composite genotypes (see "Tcris_pimass_composite_genotypes.txt" file for these) use in GWAS analyses carried out in piMASS.
DOI: 10.5061/dryad.ck2cm/3
title: Tcris_pimass_composite_genotypes.txt

description: Input genotype file for piMASS. Contains composite genotypic values for each individual.
DOI: 10.5061/dryad.ck2cm/4
title: Tcris_pimass_FHA_hiPIP_snp

description: File contains all snps (snp_id) with Rao-Blackwell posterior inclusion probabilities (PIP_rb) greater than 0.01 and includes the trait a given snp was associated with (trait) and the estimate of beta given by piMASS (B_rb).
DOI: 10.5061/dryad.fq86v/2
title: MEC-12-0887

description: Longitudinal and cross-sectional data on telomere length, body mass and tarsus length of Seychelles warblers collected in the field. Telomere length estimates were measured using an absolute qPCR method. Please see README file for further details.
DOI: 10.5061/dryad.h81s5/1
title: Exact 100m

description: The file ‘Exact 100m.csv’ includes environmental covariates calculated within a 100 m radius buffer around the 32 whooping crane group locations obtained with a global positioning system as well as within a 100 m radius buffer around the 10,000 Monte Carlo integration points used in the analysis. The column ‘presence.location’ indicates if the covariates are associated with a location of a whooping crane group (yes) or a Monte Carlo integration point (no). Columns ‘aquatic’ and ‘development’ represent the proportion of aquatic habitat and development within a 100 m radius buffer around the whooping crane group locations and the Monte Carlo integration points. Columns ‘aquatic.section’ and ‘development.section’ represent the proportion of aquatic habitat and development within a 100 m radius buffer around whooping crane group locations that were degraded in accuracy to the section level and the Monte Carlo integration points. Columns ‘aquatic.small’ and ‘development.small’ represent the proportion of aquatic habitat and development within a 100 m radius buffer around whooping crane group locations that included a small degradation (σ = 100 m) in location accuracy and the Monte Carlo integration points. Columns ‘aquatic.large’ and ‘development.large’ represent the proportion of aquatic habitat and development within a 100 m radius buffer around whooping crane group locations that included a large degradation (σ = 1000 m) in location accuracy and the Monte Carlo integration points. The accuracies of the 10,000 Monte Carlo integration points were not degraded and thus the proportion of aquatic habitat and development within the 100 m radius buffers are the same across respective columns. Note: the same 10,000 Monte Carlo integration points were used in all analyses.
DOI: 10.5061/dryad.hm550/1
title: Unique mtDNA haplotypes (n=35)

description: Nexus file containing the sequences (514 bp) of the 35 unique parcial sequences of Control Region mtDNA haplotypes discovered among 306 guanacos samples.
DOI: 10.5061/dryad.hr3dc177/1
title: Thompson et al_2012_Molecular_Ecology
DOI: 10.5061/dryad.m1063/1
title: Nucella_CoAssembly

description: Co-assembly data: list of contigs and singletons
DOI: 10.5061/dryad.m1063/2
title: SRA021021

description: Control and TBT-exposed libraries: sequencing results
DOI: 10.5061/dryad.p9b84/1
title: 182_660-final1

description: Barcode data used to generate Fig. S2
DOI: 10.5061/dryad.ph35f/1
title: PhenoData

description: Phenotypic data of all accessions and all replicates described in the paper
DOI: 10.5061/dryad.rk7n8/1
title: Geographic coordinates and allele scores of Puccinia psidii samples from Brazil and Uruguay

description: Data include geographic coordinates of single uredinial pustules of Puccinia psidii ca. 6 mm diameter collected between March 2008 and August 2009 from 148 individual plants representing seven myrtaceous taxa (eucalypts, guava, rose apple, Brazilian guava, Java plum, jabuticaba, and pitanga) in nine Brazilian states and one location in Uruguay.  Samples were genotyped at 10 microsatellite loci (PpSSR012, PpSSR014, PpSSR018, PpSSR022, PpSSR087, PpSSR102, PpSSR146, PpSSR161, PpSSR178, and PpSSR195) using genomic DNA extracted directly from each pustule following a modified CTAB-based protocol. Fragment analysis was via capillary electrophoresis using an ABI 3700 DNA automated sequencer. Positive and negative controls were included for each locus scored and scoring was repeated for representative alleles for each locus to ensure the accuracy of genotyping. Allele sizes were estimated using marker standards (ROX Geneflo 625, CHIMERx, Milwaukee, WI, USA) and scored using ABI PeakScanner Analysis Software v1.0.
DOI: 10.5061/dryad.v933m/1
title: SALMON TROUT HYBRIDISATIONS SPERM SATURATED FINAL yeates et al 2013 Figure 1

description: Data on fertilization success rates for means in first half of Figure 1
DOI: 10.5061/dryad.1775k/12
title: AST-seq data

description: Table in open office format listing targeted RNA-seq data on GM12878, DF1,DF2, H0 (GM13130 polyclonal), H2, H7, H14 and H16 cell lines. Results of statistical test and MAE calling is included.
DOI: 10.5061/dryad.1775k/13
title: Results of the experiment with padlock probe

description: This table in open office format lists all the data for SNPs that passed QC for predicted and not-predicted genes
DOI: 10.5061/dryad.3d7t5/1
title: Brain body and song variables for 48 male zebra finches, their fathers and foster-fathers, including details of rearing environment
DOI: 10.5061/dryad.434pp11q/1
title: Senescence of immunity in Tenebrio molitor - J Evol Biol

description: This excel file contains the data on encapsulation response of young and old males and their attractiveness. The attractiveness was measured as the total time females spent (s) and number of visits of females on pheromone discs of the males.
DOI: 10.5061/dryad.45bc0/1
title: Source Code for Hydrodynamic Models

description: This file contains source code implementing each of the hydrodynamic models discussed in the manuscript.  Models are implemented using MATLAB and all relevant source data is included.
DOI: 10.5061/dryad.4hs71t6t/4
title: Gopherus_ND4_AMOVA_Model_03

description: Arlequin file for AMOVA model 3 - Apalachicola/Chattahoochee split (see Table 4)
DOI: 10.5061/dryad.4hs71t6t/5
title: Gopherus_ND4_AMOVA_Model_04

description: Arlequin file for AMOVA model 4 - Peninsular Florida split (see Table 4)
DOI: 10.5061/dryad.4hs71t6t/6
title: Gopherus_ND4_AMOVA_Model_05

description: Arlequin file for AMOVA model 5 - Combines models 1 & 4 (see Table 4)
DOI: 10.5061/dryad.4hs71t6t/7
title: Gopherus_ND4_AMOVA_Model_06

description: Arlequin file for AMOVA model 6 - combines models 1 & 3 (see Table 4)
DOI: 10.5061/dryad.4hs71t6t/8
title: Gopherus_ND4_inputdata arp

description: SAMOVA genetic data file
DOI: 10.5061/dryad.4hs71t6t/9
title: Gopherus_ND4_inputdata geo

description: SAMOVA site coordinates file
DOI: 10.5061/dryad.66rd8/1
title: Pseudouroctonus reddelli and P. sprousei, COI data

description: Nexus file with aligned COI sequences. See ReadMe file to match sample names with species and voucher specimens.
DOI: 10.5061/dryad.66rd8/2
title: Pseudouroctonus reddelli and P. sprousei, 16S data

description: Nexus file with aligned 16S sequences. See ReadMe file to match sample names with species and voucher specimens.
DOI: 10.5061/dryad.66rd8/3
title: Pseudouroctonus reddelli and P. sprousei, phased ITS data

description: Nexus file with final alignment of phased ITS sequences. See ReadMe file to match sample names with species and voucher specimens.
DOI: 10.5061/dryad.7fj1k/1
title: Cecal_1_100uL_SDSTCAUrea_2d_24hr_OrbiVelos_Run3_032310_01

description: First salt pulse for Ceca 1, run 3
DOI: 10.5061/dryad.7fj1k/2
title: Cecal_1_100uL_SDSTCAUrea_2d_24hr_OrbiVelos_Run3_032310_02

description: Second salt pulse for ceca 1, run 3
DOI: 10.5061/dryad.7s393/1
title: Table S1-Cheng et al.-Heredity

description: Loci included in the consensus map for Cottus with locus name, segregating alleles that distinguished C.perifretum and C. rhenanus populations, the sequence from which the marker was developed and that was used for BLAST searches (variable position marked in square brackets).
DOI: 10.5061/dryad.7s393/2
title: Table S4-Cheng et al.-Heredity

description: Genotype data for QTL mapping of sex determination regions in Cottus as well as additional loci not included in the genetic map. Sex was coded as a binary character: male-0; female-1. Different types of crosses are separated in different sheets.
DOI: 10.5061/dryad.82mf4/1
title: Maternal line means

description: Maternal line means of fitness components, total fitness, size, and flowering time, which are used to calculate treatment means presented in Table 1 and Fig. 1. Variable names are explained in the file.
DOI: 10.5061/dryad.868sm/47
title: ROM 57714 (Fig. 7D) – Odontogriphus

description: Showing mouthparts and gut
DOI: 10.5061/dryad.868sm/48
title: ROM_57715 (Fig. 7E) – Odontogriphus, partially decayed specimen
DOI: 10.5061/dryad.868sm/49
title: ROM 61519 (Fig. 8A) – Wiwaxia, terminal view, showing foot
DOI: 10.5061/dryad.868sm/50
title: ROM 57723 (Fig. 8C) – Odontogriphus
DOI: 10.5061/dryad.868sm/51
title: ROM 57723 (Fig. 8C, enlargement) – Odontogriphus foot, showing transverse lines
DOI: 10.5061/dryad.868sm/52
title: ROM 57725 (Fig. 8D) – Odontogriphus
DOI: 10.5061/dryad.868sm/53
title: ROM 57725 (Fig. 8D) – Odontogriphus, lit to emphasize longitudinal lineations in medial region
DOI: 10.5061/dryad.b64b4/1
title: Neophytou_Bayesian_clustering_Quercus_Tree_Genetics_Genomes_Data

description: Sheet 1: Identification of tree individuals sampled in the field, assignment to sample stands, geographic coordinates, genotypic data and species assignmnent after Bayesian clustering analyses using the softwares BAPS and STRUCTURE. Sheet 2: Genotypic data of simulated individuals of the three species, first generation hybrids and backcrossings. The sampled individuals used for producing simulations are marked in the last column of the first sheet.
DOI: 10.5061/dryad.c09b0/1
title: S1_Full

description: Stratigraphic Ages and Sources
DOI: 10.5061/dryad.h7v76/1
title: Specimens Labels

description: This file contains photos for all the labels of the type-material deposited in the Museu de Ciências Naturais (MCNZ) listed in the paper. In the main folder you will find a spreadsheet (*.ods and *.xls available), with the photo file names for each specimen number. One species may have more than one specimen, one specimen may have more than one label photo and one photo may represent more than one specimen. By using autofilter, you will be able to search for a determined species, specimen or photo. Species are organized into separate folders containing their respective photos. The labels photos were taken with the same equipment used for the holotype photos presented in the paper.
DOI: 10.5061/dryad.h7v76/2
title: Geographic Coordinates

description: This file contains a spreadsheet (*.ods and *.xls available) with geographical coordinates for all the geographic data in the Hemiptera type-collection of Museu de Ciências Naturais (MCNZ). We used Google Earth for searching coordinates, but was added only when the labels provided enough information to recognize the correct locality with a minimum level of reliability. The toponyms were corrected using global gazetteers, such as Global Gazetteer Version 2.2 (available online at http://www.fallingrain.com/world/index.html). It is possible find more than one locality and coordinates for each species. By using autofilter, you will be able to search for species and/or localities.
DOI: 10.5061/dryad.h81s5/2
title: Exact 250m

description: The file ‘Exact 250m.csv’ includes environmental covariates calculated within a 250 m radius buffer around the 32 whooping crane group locations obtained with a global positioning system as well as within a 250 m radius buffer around the 10,000 Monte Carlo integration points used in the analysis. The column ‘presence.location’ indicates if the covariates are associated with a location of a whooping crane group (yes) or a Monte Carlo integration point (no). Columns ‘aquatic’ and ‘development’ represent the proportion of aquatic habitat and development within a 250 m radius buffer around the whooping crane group locations and the Monte Carlo integration points. Columns ‘aquatic.section’ and ‘development.section’ represent the proportion of aquatic habitat and development within a 250 m radius buffer around whooping crane group locations that were degraded in accuracy to the section level and the Monte Carlo integration points. Columns ‘aquatic.small’ and ‘development.small’ represent the proportion of aquatic habitat and development within a 250 m radius buffer around whooping crane group locations that included a small degradation (σ = 100 m) in location accuracy and the Monte Carlo integration points. Columns ‘aquatic.large’ and ‘development.large’ represent the proportion of aquatic habitat and development within a 250 m radius buffer around whooping crane group locations that included a large degradation (σ = 1000 m) in location accuracy and the Monte Carlo integration points. The accuracies of the 10,000 Monte Carlo integration points were not degraded and thus the proportion of aquatic habitat and development within the 250 m radius buffers are the same across respective columns. Note: the same 10,000 Monte Carlo integration points were used in all analyses.
DOI: 10.5061/dryad.h81s5/3
title: Exact 500m

description: The file ‘Exact 500m.csv’ includes environmental covariates calculated within a 500 m radius buffer around the 32 whooping crane group locations obtained with a global positioning system as well as within a 500 m radius buffer around the 10,000 Monte Carlo integration points used in the analysis. The column ‘presence.location’ indicates if the covariates are associated with a location of a whooping crane group (yes) or a Monte Carlo integration point (no). Columns ‘aquatic’ and ‘development’ represent the proportion of aquatic habitat and development within a 500 m radius buffer around the whooping crane group locations and the Monte Carlo integration points. Columns ‘aquatic.section’ and ‘development.section’ represent the proportion of aquatic habitat and development within a 500 m radius buffer around whooping crane group locations that were degraded in accuracy to the section level and the Monte Carlo integration points. Columns ‘aquatic.small’ and ‘development.small’ represent the proportion of aquatic habitat and development within a 500 m radius buffer around whooping crane group locations that included a small degradation (σ = 100 m) in location accuracy and the Monte Carlo integration points. Columns ‘aquatic.large’ and ‘development.large’ represent the proportion of aquatic habitat and development within a 500 m radius buffer around whooping crane group locations that included a large degradation (σ = 1000 m) in location accuracy and the Monte Carlo integration points. The accuracies of the 10,000 Monte Carlo integration points were not degraded and thus the proportion of aquatic habitat and development within the 500 m radius buffers are the same across respective columns. Note: the same 10,000 Monte Carlo integration points were used in all analyses.