cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3846865_d4
title: Additional file 4: of Transplanted human fecal microbiota enhanced Guillain BarrĂŠ syndrome autoantibody responses after Campylobacter jejuni infection in C57BL/6 mice

description: Python code used to generate heatmap for 60 most abundant OTUs in humanized and conventional mice. OTUs were sorted, the 60 most abundant OTUs retrieved, and those OTUs clustered according to relative abundance using python (v 3.5) and seaborn (version 0.7.1). OTU abundance increases from light green to dark green. Left y-axis labels (network_pal) corresponds to the microbiota or inoculum; Humanized =brown; Conventional = bluegreen; inoculum = Teal. Right y-axis labels represent individual samples starting with group labels. Group labels; HI2= Humanized-Infected-260.94, HUT= Humanized-Uninfected-TSB, HI1= Humanized-Infected-11168, CI2= Conventional-Infected-260.94, CUT= Conventional-Uninfected-TSB, CI1= Conventional-Infected-11168, INO= Inoculum. (MD 4Â kb)
DOI: 10.6084/m9.figshare.c.3846865_d5.v1
title: Additional file 5: of Transplanted human fecal microbiota enhanced Guillain BarrĂŠ syndrome autoantibody responses after Campylobacter jejuni infection in C57BL/6 mice

description: SraRun Table. NCBI SRA sample submission report for bioproject PRJNA380673. (TXT 18Â kb)
DOI: 10.6084/m9.figshare.c.3846865_d6.v1
title: Additional file 6: of Transplanted human fecal microbiota enhanced Guillain BarrĂŠ syndrome autoantibody responses after Campylobacter jejuni infection in C57BL/6 mice

description: Relative abundances for all operational taxonomic units. Abundances of OTUs were determined using mothur. (CSV 41Â kb)
DOI: 10.6084/m9.figshare.c.3846865_d5
title: Additional file 5: of Transplanted human fecal microbiota enhanced Guillain BarrĂŠ syndrome autoantibody responses after Campylobacter jejuni infection in C57BL/6 mice

description: SraRun Table. NCBI SRA sample submission report for bioproject PRJNA380673. (TXT 18Â kb)
DOI: 10.6084/m9.figshare.c.3846823_d9
title: MOESM7 of Immuno-diagnosis of Mycobacterium tuberculosis in sputum, and reduction of timelines for its positive cultures to within 3Â h by pathogen-specific thymidylate kinase expression assays

description: Additional file 7. This file offers details of TMKmt Ag expression among the Ugandan genotype 1 and H37RV.
DOI: 10.6084/m9.figshare.c.3846865_d6
title: Additional file 6: of Transplanted human fecal microbiota enhanced Guillain BarrĂŠ syndrome autoantibody responses after Campylobacter jejuni infection in C57BL/6 mice

description: Relative abundances for all operational taxonomic units. Abundances of OTUs were determined using mothur. (CSV 41Â kb)
DOI: 10.6084/m9.figshare.c.3846865_d7.v1
title: Additional file 7: of Transplanted human fecal microbiota enhanced Guillain BarrĂŠ syndrome autoantibody responses after Campylobacter jejuni infection in C57BL/6 mice

description: Taxonomic assignments for all OTUs. Taxonomic assignments for OTUs in Additional file 3 determined using mothur. Reads were binned into OTUs using cluster.split and the average neighbor algorithm (cutoff=0.03). (CSV 20Â kb)
DOI: 10.15468/dl.apc9j5
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Viola calcarata subsp. cavillieri (W.Becker) Negodi, Viola cavillieri W.Becker, Viola heterophylla var. cavillieri (W.Becker) W.Becker, Viola calcarata subsp. cavillieri (W.Becker) Merxm. & W.Lippert, Viola heterophylla subsp. cavillieri (W.Becker) W.Becker)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 138 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039095-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3849427_d1.v1
title: Additional file 1: Table S1. of Contrasting morphology with molecular data: an approach to revision of species complexes based on the example of European Phoxinus (Cyprinidae)

description: Characters used in the literature for distinguishing species/subspecies of P. phoxinus s.l. (XLS 39 kb)
DOI: 10.6084/m9.figshare.c.3849427_d1
title: Additional file 1: Table S1. of Contrasting morphology with molecular data: an approach to revision of species complexes based on the example of European Phoxinus (Cyprinidae)

description: Characters used in the literature for distinguishing species/subspecies of P. phoxinus s.l. (XLS 39 kb)
DOI: 10.6084/m9.figshare.c.3849427_d2.v1
title: Additional file 2: Table S2. of Contrasting morphology with molecular data: an approach to revision of species complexes based on the example of European Phoxinus (Cyprinidae)

description: Sampling sites used in the study, with corresponding drainage, basin and reference, where applicable. (XLSX 111 kb)
DOI: 10.6084/m9.figshare.c.3849427_d2
title: Additional file 2: Table S2. of Contrasting morphology with molecular data: an approach to revision of species complexes based on the example of European Phoxinus (Cyprinidae)

description: Sampling sites used in the study, with corresponding drainage, basin and reference, where applicable. (XLSX 111 kb)
DOI: 10.6084/m9.figshare.c.3849490_d1.v1
title: Additional file 1: Table S1. of Mapping of leptin and its syntenic genes to chicken chromosome 1p

description: Details about the PCR primers and amplicons used for the RH mapping, sequence statistic and position. (XLSM 14Â kb)
DOI: 10.6084/m9.figshare.c.3849490_d1
title: Additional file 1: Table S1. of Mapping of leptin and its syntenic genes to chicken chromosome 1p

description: Details about the PCR primers and amplicons used for the RH mapping, sequence statistic and position. (XLSM 14Â kb)
DOI: 10.15468/dl.uf5n4u
title: Occurrence Download

description: A dataset containing 4154 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pistacia vera L."
 ]
}

 The dataset includes 4154 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039096-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.63gst4
title: Occurrence Download

description: A dataset containing 219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Beringraja binoculata (Girard, 1855)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 219 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039097-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3849466_d9
title: Additional file 6: of Shifts in coastal sediment oxygenation cause pronounced changes in microbial community composition and associated metabolism

description: Data S1. All OTUs and a separate list for the top 10 abundant, annotated against the SILVA database. All values are reported as relative abundances, with triplicates (SD = 1) except water and sediment oxic-to-anoxic and sediment anoxic-to-oxic (both n = 2). The second sheet shows the taxonomy results based on extracted 16S and 18S rRNA gene sequences from the sediment metagenome dataset. (XLSX 1447 kb)
DOI: 10.6084/m9.figshare.c.3849505_d2.v1
title: Additional file 2: of Equine skeletal muscle adaptations to exercise and training: evidence of differential regulation of autophagosomal and mitochondrial components

description: Supplementary Tables. (XLS 2823Â kb)
DOI: 10.6084/m9.figshare.c.3849505_d2
title: Additional file 2: of Equine skeletal muscle adaptations to exercise and training: evidence of differential regulation of autophagosomal and mitochondrial components

description: Supplementary Tables. (XLS 2823Â kb)
DOI: 10.6084/m9.figshare.c.3849517_d5.v1
title: Additional file 5:Table 3 of The effect of Nullomer-derived peptides 9R, 9S1R and 124R on the NCI-60 panel and normal cell lines

description: ATP depletion of cancer and normal cell lines after treatment with 9R, 9S1R and 124R. ATP content: expressed as % of control. Three-hour incubations with 50uM peptide. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3849517_d5
title: Additional file 5:Table 3 of The effect of Nullomer-derived peptides 9R, 9S1R and 124R on the NCI-60 panel and normal cell lines

description: ATP depletion of cancer and normal cell lines after treatment with 9R, 9S1R and 124R. ATP content: expressed as % of control. Three-hour incubations with 50uM peptide. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3850747_d1.v1
title: Additional file 1: Table S1. of Transcriptomics and methylomics in chronic periodontitis with tobacco use: a pilot study

description: Differentially expressed (DE) genes in SN vs. NN. Table S2. Differentially expressed (DE) genes in SP vs. NP. Table S3. Differentially methylated (DM) genes in SN vs. NN. Table S4. Differentially methylated (DM) genes in SP vs. NP. Table S5. Differentially expressed (DE) and methylated (DM) genes in smokers vs. non-smokers. Table S6. Differentially expressed (DE) and methylated (DM) genes. Table S7. Genes involved in protein-protein interaction (PPI). (XLSX 309Â kb)
DOI: 10.6084/m9.figshare.c.3850747_d1
title: Additional file 1: Table S1. of Transcriptomics and methylomics in chronic periodontitis with tobacco use: a pilot study

description: Differentially expressed (DE) genes in SN vs. NN. Table S2. Differentially expressed (DE) genes in SP vs. NP. Table S3. Differentially methylated (DM) genes in SN vs. NN. Table S4. Differentially methylated (DM) genes in SP vs. NP. Table S5. Differentially expressed (DE) and methylated (DM) genes in smokers vs. non-smokers. Table S6. Differentially expressed (DE) and methylated (DM) genes. Table S7. Genes involved in protein-protein interaction (PPI). (XLSX 309Â kb)
DOI: 10.15468/dl.x4vnd4
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Beringraja inornata (Jordan & Gilbert, 1881)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 17 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039098-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3850759_d4.v1
title: Additional file 4: Table S7. of Sialotranscriptomics of Rhipicephalus zambeziensis reveals intricate expression profiles of secretory proteins and suggests tight temporal transcriptional regulation during blood-feeding

description: Annotation of the predicted proteins of R. zambeziensis. (XLSX 7708Â kb)
DOI: 10.6084/m9.figshare.c.3850759_d4
title: Additional file 4: Table S7. of Sialotranscriptomics of Rhipicephalus zambeziensis reveals intricate expression profiles of secretory proteins and suggests tight temporal transcriptional regulation during blood-feeding

description: Annotation of the predicted proteins of R. zambeziensis. (XLSX 7708Â kb)
DOI: 10.6084/m9.figshare.c.3850756_d4
title: Additional file 13: Table S5. of A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression

description: Spearman and Pearson correlation coefficients for Illumina vs Ion Torrent fold-change comparison. Spearman and Pearson correlation coefficients between Illumina and Ion Torrent log2 fold-change values, within each alignment algorithm. Separate correlation coefficients were calculated for DEGs identified by both platforms, by Illumina only, and by Ion Torrent only. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3850756_d5.v1
title: Additional file 14: Table S6. of A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression

description: Significant results from Ingenuity Pathway Analysis -- Canonical Pathways. IPA results from the canonical pathways analysis for each combination of platform and aligner. Table lists pathway names, enrichment p-values, z-scores, and the list of DEGs for each pathway. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.c.3850756_d5
title: Additional file 14: Table S6. of A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression

description: Significant results from Ingenuity Pathway Analysis -- Canonical Pathways. IPA results from the canonical pathways analysis for each combination of platform and aligner. Table lists pathway names, enrichment p-values, z-scores, and the list of DEGs for each pathway. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.c.3850756_d6.v1
title: Additional file 15: Table S7. of A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression

description: Top 10 results from Ingenuity Pathway Analysis -- Upstream Regulators. IPA results from the upstream regulators pathway analysis for each combination of platform and aligner. Table lists the identities of the upstream regulators, predicted activation state, p-value for DEG overlap with regulator targets, list of DEGs for each upstream regulator. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3850756_d6
title: Additional file 15: Table S7. of A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression

description: Top 10 results from Ingenuity Pathway Analysis -- Upstream Regulators. IPA results from the upstream regulators pathway analysis for each combination of platform and aligner. Table lists the identities of the upstream regulators, predicted activation state, p-value for DEG overlap with regulator targets, list of DEGs for each upstream regulator. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3850756_d7.v1
title: Additional file 16:Table S8. of A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression

description: The number of platform-specific genes detected by aligner. Numbers of platform-specific genes detected in each aligner as a function of the mean gene-level read counts across all samples. Also lists the number of DEGs among the platform-specific genes. (XLSX 11Â kb)
DOI: 10.15468/dl.p4pvy3
title: Occurrence Download

description: A dataset containing 7550 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Russian Federation",
 "TaxonKey is Tilia cordata Mill."
 ]
}

 The dataset includes 7550 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158224-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.avdxlj
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dasyatis navarrae (Steindachner, 1892)"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042208-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5cxq8j
title: Occurrence Download

description: A dataset containing 1459 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is CAN.9_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Abies balsamea (L.) Mill."
 ]
}

 The dataset includes 1459 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001215-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nn895s
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Freshwater Lamprey Survey Data"
 ]
}

 The dataset includes 772 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001644-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dgoiaq
title: Occurrence Download

description: A dataset containing 6014 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is globec/soglobec/process/krill"
 ]
}

 The dataset includes 6014 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042209-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ducy2k
title: Occurrence Download

description: A dataset containing 849 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Abarema abbottii (Rose & Leonard) Barneby & J.W.Grimes, Abarema acreana (J.F.Macbr.) L.Rico, Abarema adenophora (Ducke) Barneby & J.W.Grimes, Abarema alexandri (Urb.) Barneby & J.W.Grimes, Abarema asplenifolia (Griseb.) Barneby & J.W.Grimes, Abarema auriculata (Benth.) Barneby & J.W.Grimes, Abarema barbouriana (Standl.) Barneby & J.W.Grimes, Abarema barnebyana Iganci & M.P.Lima, Abarema brachystachya (DC.) Barneby & J.W.Grimes, Abarema callejasii Barneby & J.W.Grimes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 849 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083685-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mh8tk7
title: Occurrence Download

description: A dataset containing 1105 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Naja naja (Linnaeus, 1758)"
 ]
}

 The dataset includes 1105 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096287-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.szdvuf
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dasyatis navarrae (Steindachner, 1892)"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042209-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.23fftn
title: Occurrence Download

description: A dataset containing 59380 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-18.66502 30.97615,61.88113 30.97615,61.88113 72.23207,-18.66502 72.23207,-18.66502 30.97615))",
 "Geometry POLYGON((19.01201 51.76967,30.10693 51.76967,30.10693 61.34037,19.01201 61.34037,19.01201 51.76967))"
 ]
 },
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cypripedium calceolus L."
 ]
}

 The dataset includes 59380 records from 264 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083684-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mnk3sd
title: Occurrence Download

description: A dataset containing 21577 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Scilla siberica Andrews"
 ]
}

 The dataset includes 21577 records from 126 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0113984-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xgij6x
title: Occurrence Download

description: A dataset containing 4297 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oreochromis niloticus (Linnaeus, 1758)"
 ]
}

 The dataset includes 4297 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042210-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.my95hj
title: Occurrence Download

description: A dataset containing 128821 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epilobium angustifolium L."
 ]
}

 The dataset includes 128821 records from 760 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083689-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hjdnqb
title: Occurrence Download

description: A dataset containing 12783 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Palmaria palmata (L.) F.Weber & D.Mohr"
 ]
}

 The dataset includes 12783 records from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0146457-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive118947.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive118947.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0110737.10fu
title: SH0110737.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive118948.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive118948.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.