cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.0gb5mkm90
title: Environmentally acquired gut-associated bacteria are not critical for growth and survival in a solitary bee, Megachile rotundata

description: Social bees have been extensively studied for their gut microbial
 functions, but the significance of the gut microbiota in solitary bees
 remain less explored. Solitary bee, Megachile rotundata females provision
 their offspring with pollen from various plant species, harboring a
 diverse microbial community that colonizes larvae guts.​ The
 Apilactobacillus is the most abundant microbe, but evidence concerning the
 effects of Apilactobacillus and ​other provision microbes on growth and
 survival ​are ​lacking. We ​hypothesized that the
 presence of Apilactobacillus in abundance would enhance larval
 and prepupal development, weight, and survival, while the absence of
 intact microbial communities was expected to have a negative impact on bee
 fitness. We reared larvae on pollen provisions with naturally collected
 microbial communities (Natural pollen) or devoid of microbial communities
 (Sterile pollen). We also assessed the impact of introducing
 Apilactobacillus micheneri by adding it to both types of pollen
 provisions. Feeding larvae with sterile pollen + A. micheneri led to the
 highest mortality rate, followed by natural pollen + A. micheneri, and
 sterile pollen. Larval development was significantly delayed in groups fed
 with sterile pollen. Interestingly, larval and prepupal weights did not
 significantly differ across treatments compared to natural pollen-fed
 larvae. 16S rRNA gene sequencing found a dominance of Sodalis, when A.
 micheneri was introduced to natural pollen. The presence of Sodalis with
 abundant A. micheneri suggests potential crosstalk between both, shaping
 bee nutrition and health. Hence, this study highlights that the reliance
 on non-host specific environmental bacteria may not impact fitness of M.
 rotundata.
description: # Microbiome Megachile rotundata
 ([https://doi.org/10.5061/dryad.0gb5mkm90](https://doi.org/10.5061/dryad.0gb5mkm90)) Raw reads are available on NCBI with SubmissionID:       SUB14595903\ BioProject ID:      PRJNA1138008 ## Legends in the data: (N), natural pollen with added A. micheneri (NAm), Sterile pollen (S), sterile pollen with A. micheneri (Sam), and natural pollen with an antibacterial cocktail (AC). All .qzv file must be downloaded and uploaded to [https://view.qiime2.org/ ](https://view.qiime2.org/)  16Staxabarplots_clean2.qzv : Relative abundances of the bacteria presented in Megachile rotundata larvae after feeding on treated pollen. Treatments were: natural pollen (N), natural pollen with added A. micheneri (NL), Sterile pollen (S), sterile pollen with A. micheneri (SL), and natural pollen with an antibacterial cocktail (AB). demux-full_(2).qzv file represent Demultiplexed sequence counts summary stats-dada2.qzv file represents filtered, denoised, merged and non chimeric reads 16s_MAPs_GB.tsv represents barcode sequences used for sequencing alpha_rarefaction3.qzv represents alpha rarefaction- sequences
DOI: 10.15468/dl.4upn53
title: Occurrence Download

description: A dataset containing 3615 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Sula nebouxii"
 ]
}

 The dataset includes 3615 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004031-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h54nuq
title: Occurrence Download

description: A dataset containing 2286 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Odontesthes regia",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 2286 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004032-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.r4xgxd2np
title: Phenotypic and genotypic analysis of drug resistance in M. tuberculosis isolates in Gansu, China

description: Tuberculosis has posed a serious threat to human health. It is imperative
 to investigate the geographic prevalence of tuberculosis and medication
 resistance, as this information is essential for informing strategies for
 its prevention and treatment. Drug resistance was identified using a
 proportion method. Drug-resistant genes and pathways were predicted using
 whole genome sequencing. The drug resistance range of bedaquiline was
 identified using the microporous plate two-fold dilution method, and drug
 resistance genes were studied using sequencing. The study revealed that
 19.99% of the tuberculosis cases had multidrug resistance. The genes of M.
 tuberculosis are predominantly involved in the synthesis of ABC
 transporters, two-component systems, and bacterial secretion systems, as
 well as in energy production and conversion, and lipid transport and
 metabolism. The genes encode for 82.45% of carbohydrate-related enzymes
 such as glycoside hydrolases, glycosyl transferases, and carbohydrate
 esterases. The minimum inhibitory concentration (MIC) of bedaquiline
 against clinical strains was approximately 0.06 μg/mL, with identified
 mutations in drug-resistant genes Rv0678, atpE, and pepQ, specifically
 V152A, P62A, and T222N, respectively. The multidrug resistance
 tuberculosis development was attributed to the strong medication
 resistance exhibited. It was concluded that tuberculosis had presented a
 high level of drug resistance. Phenotypic resistance was related to genes,
 existing potential genetic resistance in M. tuberculosis. Bedaquiline was
 found to possess effective antibacterial properties against M.
 tuberculosis.
description: # Phenotypic and genotypic analysis of drug resistance in M. tuberculosis
 isolates in Gansu, China
 ([https://doi.org/10.5061/dryad.r4xgxd2np](https://doi.org/10.5061/dryad.r4xgxd2np) Complete genome sequence of Mycobacterium tuberculosis，to identify resistance loci, resistance genes and pathways were predicted using whole-genome sequencing, and to identify mutation sites, we performed sequencing. \## wgs-tb-1: whole genome sequence \## Sharing/Access information Data was derived from the following sources: (Beijing Biomarker Technologies Co., LTD) \## Code/Software Any sequence analysis software can be run.
DOI: 10.15468/w2zjx8
title: Four new species of Cleidogona Cook & Collins, 1895 (Diplopoda: Chordeumatida: Cleidogonidae) from the Great Smoky Mountains National Park, USA

description: This dataset contains the digitized treatments in Plazi based on the original journal article Snyder, Bruce A., Shear, William A. (2025): Four new species of Cleidogona Cook & Collins, 1895 (Diplopoda: Chordeumatida: Cleidogonidae) from the Great Smoky Mountains National Park, USA. Zootaxa 5722 (2): 249-264, DOI: 10.11646/zootaxa.5722.2.5, URL: https://doi.org/10.11646/zootaxa.5722.2.5AbstractWe provide an update to our knowledge of the millipede fauna of the Great Smoky Mountains National Park, North Carolina and Tennessee, USA. In addition to one new park record (Cleidogona jocassee Hoffman, 1950a), we describe four new species of millipedes: Cleidogona chilhoweensis sp. nov., Cleidogona columbicauda sp. nov., Cleidogona hendrixi sp. nov., and Cleidogona sparta sp. nov. These bring the number of described Cleidogona to 93 and Cleidogona known from the park to 10 species.
DOI: 10.15468/dl.bkrste
title: Occurrence Download

description: A dataset containing 342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-67 44.82,-65.5 44.82,-65.5 44.90823,-65.5 46,-67 46,-67 44.82))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is LC",
 "OccurrenceStatus is Present",
 "TaxonKey is Fringillidae",
 "Year 2013-2023"
 ]
}

 The dataset includes 342 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004033-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.82294/dvnzkvb2a
title: Entrevistas semiestructuradas - Grupo Focal. Territorio: Cali. Sector: Cultura, Educación. Año: 2023

description: A partir de un proceso de acompañamiento situado, se recopilaron testimonios mediante un grupo focal realizado durante el año 2023, con el propósito de indagar sobre los aprendizajes que emergieron al reunirse para discutir elementos de las planeaciones de clase en el marco de la estrategia de Aulas Grupales. Este grupo focal exploró cuatro categorías que permitieron describir la práctica en educación artística de docentes, cultores y sabedores vinculados a programas de formación en educación artística y cultural del sector Cultura (educación informal) y del sector Educación (educación formal) en la ciudad de Cali.
DOI: 10.5061/dryad.hdr7sqvs0
title: Data from: Helper plasticity in response to breeder turnover in gray wolves

description: Nonbreeding helpers can greatly improve the survival of young and
 reproductive fitness of breeders in many cooperatively breeding species.
 Breeder turnover, in turn, can have profound effects on dispersal
 decisions made by helpers. Despite its importance in explaining group size
 and predicting population demography of cooperative breeders, our current
 understanding of how individual traits influence animal behavior after
 disruptions to social structure is incomplete particularly for terrestrial
 mammals. We used 12 years of genetic sampling and group pedigrees of gray
 wolves (Canis lupus) in Idaho, USA, to ask questions about how breeder
 turnover affected the apparent decisions by mature helpers
 (&gt;2-year-old) to stay or leave a group over a one-year time
 interval. We found that helpers showed plasticity in their responses to
 breeder turnover. Most notably, helpers varied by sex and appeared to base
 dispersal decisions on the sex of the breeder that was lost as well. Male
 and female helpers stayed in a group slightly more often when there was
 breeder turnover of the same sex, although males that stayed were often
 recent adoptees in the group. Males, however, appeared to remain in a
 group less often when there was breeding female turnover likely because
 such vacancies were typically filled by related females from the males’
 natal group (i.e., inbreeding avoidance).  We show that helpers
 exploit instability in the breeding pair to secure future breeding
 opportunities for themselves. The confluence of breeder turnover, helper
 sex, and dispersal and breeding strategies merge to influence group
 composition in gray wolves.
description: # Helper plasticity in gray wolves
 [https://doi.org/10.5061/dryad.hdr7sqvs0](https://doi.org/10.5061/dryad.hdr7sqvs0) Number of mature helpers in gray wolf packs derived from genetic sampling in Idaho, USA ## Description of the data and file structure Number of mature helpers in gray wolf packs derived from genetic sampling in Idaho, USA. NA's in the data were used when there was no breeding the following year (t+1) in a pack.  year = year sampled pack = pack name NB_ID = individual ID for helper r_to_pups = genetic relatedness of helper to pups NB_sex = sex of helper NB_stay_1 = did helper stay or go, stay = 1 become_breeder = did helper become a breeder multiple_breeding_t_plus_1 = was there multiple breeding in group no_adults = group size turnover = was the breeder turnover BF_t_plus_1 = who was the new breeding female at t+1 BM_t_plus_1= who was the new breeding male at t+1, BF_change = was there a new, unrelated breeding female in group BM_change = was there a new, unrelated breeding male in group harvest_rate = percent of population harvested that year brdr_turnover_event = ID number for number of turnover events in dataset  ## Sharing/Access information Data was derived from the following sources: * DNA
DOI: 10.5061/dryad.9zw3r22pp
title: Morphology, behavior, and phylogenomics of Oxytoxum lohmannii

description: Dinoflagellates are an abundant and diverse group of protists representing
 a wealth of unique biology and ecology. While many dinoflagellates are
 photosynthetic or mixotrophic, many taxa are heterotrophs, often with
 complex feeding strategies. Compared to their photosynthetic counterparts,
 heterotrophic dinoflagellates remain understudied, as they are difficult
 to culture. One exception, a long-cultured isolate originally classified
 as Amphidinium but recently reclassified as Oxytoxum, has been the subject
 of a number of feeding, growth, and chemosensory studies. This lineage was
 recently determined to be closely related to Prorocentrum using
 phylogenetics of ribosomal RNA gene sequences, but the exact nature of
 this relationship remains unresolved. Using transcriptomes sequenced from
 culture and three single cells from the environment, we produce a robust
 phylogeny of 242 genes, revealing Oxytoxum is likely sister to the
 Prorocentrum clade, rather than nested within it. Molecular investigations
 uncover evidence of a reduced, non-photosynthetic plastid and
 proteorhodopsin, a photoactive proton pump acquired horizontally from
 bacteria. We describe the ultrastructure of O. lohmannii, including
 densely packed trichocysts, and a new type of mucocyst. We observe that O.
 lohmannii feeds preferentially on cryptophytes using myzocytosis, but can
 also feed on various phytoflagellates using conventional phagocytosis. O.
 lohmannii is amenable to culture, providing an opportunity to better study
 heterotrophic dinoflagellate biology and feeding ecology.
description: # Morphology, behavior, and phylogenomics of *Oxytoxum lohmannii*
 [https://doi.org/10.5061/dryad.9zw3r22pp](https://doi.org/10.5061/dryad.9zw3r22pp) Files containing sequence, phylogenomic, and video data for *O. lohmannii*. ## Description of the data and file structure Dryad-stored material consists of: A zipped folder containing all peptide single-cell transcriptome assemblies: * Oxytoxum_lohmannii_peptide_transcriptome_assemblies.zip A zipped folder containing *.contree files that can be viewed in FigTree v.1.4.4: * single_gene_trees.zip A zipped fasta file of the concatenated alignment used to make the multi-protein phylogeny: * concatenated_multiprotein_alignment.fasta.zip A zipped file containing three videos of wild-isolated cells collected for single-cell transcriptomics: * O_lohmannii_wild_cell_videos.zip
DOI: 10.15468/dl.j2pxw3
title: Occurrence Download

description: A dataset containing 31676 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-67 44.82,-65.5 44.82,-65.5 46,-67 46,-67 44.82))",
 "HasCoordinate is true",
 "IucnRedListCategory is LC",
 "OccurrenceStatus is Present",
 "TaxonKey is Fringillidae",
 "Year 2013-2023"
 ]
}

 The dataset includes 31676 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004034-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.f7m0cfz52
title: Ocean weather systems on icy moons, with application to Enceladus

description: We explore ocean circulation on a rotating icy moon driven by temperature
 gradients imposed at its upper surface due to the suppression of the
 freezing point of water with pressure, as might be induced by ice
 thickness variations on Enceladus. Employing high-resolution simulations,
 we find that eddies dominate the circulation and arise from baroclinic
 instability, analogous to Earth’s weather systems. Multiple alternating
 jets, resembling those of Jupiter’s atmosphere, are sustained by these
 baroclinic eddies. We establish a theoretical model of the stratification
 and circulation and present scaling laws for the magnitude of the
 meridional heat transport. These are tested against numerical simulations.
 Through the identification of key non-dimensional numbers, our simplified
 model is applied to other icy moons. We conclude that baroclinic
 instability is central to the general circulation of icy moons.
description: # Ocean weather systems on icy moons, with application to Enceladus
 [https://doi.org/10.5061/dryad.f7m0cfz52](https://doi.org/10.5061/dryad.f7m0cfz52) ## Description The NetCDF files in this dataset are used to create figures in the corresponding paper. These files are either long-term zonal-mean averages or 3D snapshots. `kappa` and `DeltaT` in the file names represent diffusivity and the prescribed temperature (°C) difference used in that simulation respectively.
DOI: 10.5061/dryad.gxd2547v7
title: The historical connection of the Arctic and Qinghai-Tibet Plateau floras and their asynchronous diversification in response to Cenozoic climate cooling

description: The Arctic and the Qinghai-Tibet Plateau (QTP) are two northern regions
 with the most extensive cold habitats on Earth and have undergone dramatic
 warming in recent decades. However, we know little about the historical
 connection of the Arctic and QTP biotas and their respective
 diversification processes. Here, we used Meconopsis and Oreomecon, an
 Arctic–QTP disjunct angiosperm genus pair with poor seed dispersal
 abilities, to shed light on the evolutionary connection of the Arctic and
 QTP floras and their respective diversification patterns. Our results show
 that the Meconopsis-Oreomecon clade colonized the Arctic from the QTP in
 the Late Eocene, suggesting the hitherto earliest known dispersal event
 between the two regions. The Arctic Oreomecon split from the QTP
 Meconopsis at ~34 Ma, associated with their climatic niche differentiation
 and aridification of the Asian interior. Although both Oreomecon and
 Meconopsis pre-adapted to open and low-temperature environments and had
 similar diversification patterns, they diversified asynchronously in
 respondence to different Cenozoic climate cooling events. The Arctic is
 approaching its carrying capacity, whereas the QTP is still far from
 saturation. These findings improve knowledge of evolutionary connection
 and difference between Arctic and QTP floras, and have important
 conservation implications given enhanced warming in both regions.
description: # The historical connection of the Arctic and Qinghai-Tibet Plateau floras
 and their asynchronous diversification in response to Cenozoic climate
 cooling Sequences: sequence alignments in FASTA format for each locus used
 in phylogenetic analyses. MCC tree.tre: the time-calibrated phylogeny of
 the Old World Papavereae based on the five-locus dataset using BESAT
 software. Bioclimatic data.csv: mean values of 19 bioclimatic variables
 for each species used in climatic niche analyses. Note: The 19 bioclimatic
 variables are coded as follows: BIO1 = Annual Mean Temperature BIO2 = Mean
 Diurnal Range (Mean of monthly (max temp - min temp)) BIO3 = Isothermality
 (BIO2/BIO7) (×100) BIO4 = Temperature Seasonality (standard deviation
 ×100) BIO5 = Max Temperature of Warmest Month BIO6 = Min Temperature of
 Coldest Month BIO7 = Temperature Annual Range (BIO5-BIO6) BIO8 = Mean
 Temperature of Wettest Quarter BIO9 = Mean Temperature of Driest Quarter
 BIO10 = Mean Temperature of Warmest Quarter BIO11 = Mean Temperature of
 Coldest Quarter BIO12 = Annual Precipitation BIO13 = Precipitation of
 Wettest Month BIO14 = Precipitation of Driest Month BIO15 = Precipitation
 Seasonality (Coefficient of Variation) BIO16 = Precipitation of Wettest
 Quarter BIO17 = Precipitation of Driest Quarter BIO18 = Precipitation of
 Warmest Quarter BIO19 = Precipitation of Coldest Quarter
DOI: 10.15468/dl.8fmprh
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ramnogaster arcuata",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 9 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004035-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.su8w3y
title: Occurrence Download

description: A dataset containing 276 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Abies fraseri",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is United States of America",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2020"
 ]
}

 The dataset includes 276 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004036-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.