cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7739095
title: MICOM model databases version 1

description: This repository includes pre-built model databases for the microbial community modeling tool MICOM (https://micom-dev.github.io/micom). All model databases will work with the MICOM python package or the MICOM Qiime 2 plugin (http://github.com/micom-dev/q2-micom).<br><br> The Zenodo release is built and versioned automatically from the the source repository at http://github.com/micom-dev/databases. Thus, all bug reports, requests, and comments should be made there.<br> Model databases are named with the following scheme:<br> SOURCE_SVER_TAXONOMY_RANK_VERSION.qza<br> where:<br> SOURCE = source database for the models SVER = version of the source database TAXONOMY = the taxonomy naming scheme used RANK = the taxonomic rank models were collapsed on VERSION = the version of the built database For all practical purposes the TAXONOMY should coincide with the taxonomic classification of your amplicons or genomes. For instance, if you used kraken2 and bracken2 you should use a model database with TAXONOMY = ncbi. Note that some taxonomy databases (GTDB, GreenGenes) prefix taxonomy identifiers with a rank indentifier like `s__Species`. Those are usually maintained in the databases here except for the NCBI Taxonomy which usually does not use those. You can verify taxon names using the manifests in the `release` section of http://github.com/micom-dev/databases . <br><br> For growth media that can be used with the model databases here please see the MICOM media repository at https://github.com/micom-dev/media.
description: {"references": ["Diener C, Gibbons SM, Resendis-Antonio O. MICOM: Metagenome-Scale Modeling To Infer Metabolic Interactions in the Gut Microbiota. mSystems. 2020 Jan 21;5(1):e00606-19. doi: 10.1128/mSystems.00606-19. PMID: 31964767; PMCID: PMC6977071", "Machado D, Andrejev S, Tramontano M, Patil KR. Fast automated reconstruction of genome-scale metabolic models for microbial species and communities. Nucleic Acids Res. 2018 Sep 6;46(15):7542-7553. doi: 10.1093/nar/gky537. PMID: 30192979; PMCID: PMC6125623", "Magn\u00fasd\u00f3ttir S, Heinken A, Kutt L, Ravcheev DA, Bauer E, Noronha A, Greenhalgh K, J\u00e4ger C, Baginska J, Wilmes P, Fleming RM, Thiele I. Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota. Nat Biotechnol. 2017 Jan;35(1):81-89. doi: 10.1038/nbt.3703. Epub 2016 Nov 28. PMID: 27893703", "Zimmermann, J., Kaleta, C. & Waschina, S. gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic models. Genome Biol 22, 81 (2021). doi: 10.1186/s13059-021-02295-1", "Heinken, A., Hertel, J., Acharya, G. et al. Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine. Nat Biotechnol (2023). doi: 10.1038/s41587-022-01628-0", "Almeida, A., Nayfach, S., Boland, M. et al. A unified catalog of 204,938 reference genomes from the human gut microbiome. Nat Biotechnol 39, 105\u2013114 (2021). doi: 10.1038/s41587-020-0603-3"]}
DOI: 10.6084/m9.figshare.22129019
title: raw_data

description: Raw data for block-wise learning paper. Github code to unpack data is forthcoming
DOI: 10.18112/openneuro.ds004533.v1.0.0
title: Ironia VEV
DOI: 10.5281/zenodo.7737095
title: Quantifying the Interaction of Oceanic and Riverine processes on Phytoplankton Dynamics in a Highly Dynamic Coastal Ecosystem

description: The dataset lists the data in Figure 3, S1 and S7.
DOI: 10.5281/zenodo.7737094
title: Quantifying the Interaction of Oceanic and Riverine processes on Phytoplankton Dynamics in a Highly Dynamic Coastal Ecosystem

description: The dataset lists the data in Figure 3, S1 and S7.
DOI: 10.6084/m9.figshare.22280977
title: Part 1-articles export.xls

description: It contains the list of papers returned in the search bases, and the result of the selection for RQ 1 of the paper entitled " A survey on Association Rule Mining for Enterprise Architecture Model Discovery"
DOI: 10.6084/m9.figshare.22280977.v2
title: Part 1-articles export.xls

description: It contains the list of papers returned in the search bases, and the result of the selection for RQ 1 of the paper entitled " A survey on Association Rule Mining for Enterprise Architecture Model Discovery"
DOI: 10.6084/m9.figshare.22280977.v1
title: Part 1-articles export.xls

description: It contains the list of papers returned in the search bases, and the result of the selection for RQ 1 of the paper entitled " A survey on Association Rule Mining for Enterprise Architecture Model Discovery"
DOI: 10.26187/6x8a-w683
title: Data for meta-analysis and systematic review from tactile-mediated vection research
DOI: 10.6084/m9.figshare.22130228
title: Clopidogrel Responsiveness

description: Current smokers had a good response to clopidogrel therapy which exerted a beneficial effect when undergoing PCI as compared to non-smokers. The marked difference in AUC between smokers and non-smokers could be related to the variance in hemoglobin level. The smokers’ paradox needs further justification to confirm this concept.
DOI: 10.6084/m9.figshare.22130228.v1
title: Clopidogrel Responsiveness

description: Current smokers had a good response to clopidogrel therapy which exerted a beneficial effect when undergoing PCI as compared to non-smokers. The marked difference in AUC between smokers and non-smokers could be related to the variance in hemoglobin level. The smokers’ paradox needs further justification to confirm this concept.
DOI: 10.5281/zenodo.7739059
title: PSKRIPS Version 1 - Data for January Case.

description: <strong>This folder contains the file required to run the January Case of the Polar version of the Scripps-Kaust model.</strong><br> <strong>Information on this coupled model can be found in the paper that will be submitted to Geosciences Model Developments : Malyarenko, A., Gossart, A., Sun, R. and Krapp, M.: Conservation of heat and mass in P-SKRIPS: the coupled atmosphere-ice-ocean model of the Ross Sea.</strong> <strong>Folders JanuaryCase 1 and 3 contain partial data needed to replicate the January case. Folder januaryCase2 is published with the main code in a separate Zenodo upload. </strong>
DOI: 10.5281/zenodo.7739058
title: PSKRIPS Version 1 - Data for January Case.

description: <strong>This folder contains the file required to run the January Case of the Polar version of the Scripps-Kaust model.</strong><br> <strong>Information on this coupled model can be found in the paper that will be submitted to Geosciences Model Developments : Malyarenko, A., Gossart, A., Sun, R. and Krapp, M.: Conservation of heat and mass in P-SKRIPS: the coupled atmosphere-ice-ocean model of the Ross Sea.</strong> <strong>Folders JanuaryCase 1 and 3 contain partial data needed to replicate the January case. Folder januaryCase2 is published with the main code in a separate Zenodo upload. </strong>
DOI: 10.6084/m9.figshare.22281301
title: Raw data- Variations in phenotypic traits in a frog Nanorana parkeri: different adaptive strategies between sexes to different altitudes

description: <strong>The raw data of the article “Variations in phenotypic traits in a frog </strong><em><strong>Nanorana parkeri</strong></em><strong>: different adaptive strategies between sexes to different altitudes”.</strong>
DOI: 10.6084/m9.figshare.22281301.v1
title: Raw data- Variations in phenotypic traits in a frog Nanorana parkeri: different adaptive strategies between sexes to different altitudes

description: <strong>The raw data of the article “Variations in phenotypic traits in a frog </strong><em><strong>Nanorana parkeri</strong></em><strong>: different adaptive strategies between sexes to different altitudes”.</strong>
DOI: 10.25493/q0fg-1x8
title: Extracellular unit recordings from CA1/CA3 pyramidal cells in rats exploring an open arena with object landmarks (v1)

description: These data were collected to determine how objects or landmarks influence activity in hippocampal CA1 and CA3 neurons. The data consists of spike recordings that include time and position stamps from up to 620 neurons recorded simultaneously in the CA1 and CA3 regions of rats that were freely foraging in an arena. The experiment was conducted both with and without a distinctive object present. The dataset is a mix of tetrode (“microdrive”) and probe (Neuropixels 2.0) recordings collected from 10 male Long-Evans rats. The data can be reused to further determine activity structure in hippocampal CA1 cells during foraging in simple structured environments.
DOI: 10.5517/ccdc.csd.cc26hz4v
title: CCDC 2041137: Experimental Crystal Structure Determination

description: Related Article: Fernando de Lera-Garrido, Rocío Domínguez, M. Paz Fernández-Liencres, Cristina Martín, Juan Tolosa, Eva M. García-Frutos, Josefina Perles, Johan Hofkens, Joaquín C. García-Martínez, Andrés Garzón-Ruiz, Amparo Navarro|2023|Dyes Pigm.|213|111179|doi:10.1016/j.dyepig.2023.111179
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26hz5w
title: CCDC 2041138: Experimental Crystal Structure Determination

description: Related Article: Fernando de Lera-Garrido, Rocío Domínguez, M. Paz Fernández-Liencres, Cristina Martín, Juan Tolosa, Eva M. García-Frutos, Josefina Perles, Johan Hofkens, Joaquín C. García-Martínez, Andrés Garzón-Ruiz, Amparo Navarro|2023|Dyes Pigm.|213|111179|doi:10.1016/j.dyepig.2023.111179
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26hz6x
title: CCDC 2041139: Experimental Crystal Structure Determination

description: Related Article: Fernando de Lera-Garrido, Rocío Domínguez, M. Paz Fernández-Liencres, Cristina Martín, Juan Tolosa, Eva M. García-Frutos, Josefina Perles, Johan Hofkens, Joaquín C. García-Martínez, Andrés Garzón-Ruiz, Amparo Navarro|2023|Dyes Pigm.|213|111179|doi:10.1016/j.dyepig.2023.111179
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26hz7y
title: CCDC 2041140: Experimental Crystal Structure Determination

description: Related Article: Fernando de Lera-Garrido, Rocío Domínguez, M. Paz Fernández-Liencres, Cristina Martín, Juan Tolosa, Eva M. García-Frutos, Josefina Perles, Johan Hofkens, Joaquín C. García-Martínez, Andrés Garzón-Ruiz, Amparo Navarro|2023|Dyes Pigm.|213|111179|doi:10.1016/j.dyepig.2023.111179
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7739166
title: 02cc8518-84ab-4742-afc5-da6389a4ad27

description: These data sets are one of the workflows in manabuishii/yevis-getting-started.
DOI: 10.5281/zenodo.7739165
title: 02cc8518-84ab-4742-afc5-da6389a4ad27

description: These data sets are one of the workflows in manabuishii/yevis-getting-started.
DOI: 10.6084/m9.figshare.22186879.v2
title: People Living with HIV Who Has Becomes an Influencer on Social

description: Contents of the interview transcripts PLHIV on social media
DOI: 10.5517/ccdc.csd.cc2c9c68
title: CCDC 2183739: Experimental Crystal Structure Determination

description: Related Article: Lang Liu, Changting Wen, Guojin Sun, Yao Li, Jun Zhang, Zhe Zhang, Zesi Wang, Mengyao She, Ping Liu, Shengyong Zhang, Jianli Li|2023|Org.Lett.|25|1530|doi:10.1021/acs.orglett.3c00322
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c9c79
title: CCDC 2183740: Experimental Crystal Structure Determination

description: Related Article: Lang Liu, Changting Wen, Guojin Sun, Yao Li, Jun Zhang, Zhe Zhang, Zesi Wang, Mengyao She, Ping Liu, Shengyong Zhang, Jianli Li|2023|Org.Lett.|25|1530|doi:10.1021/acs.orglett.3c00322
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c9c8b
title: CCDC 2183741: Experimental Crystal Structure Determination

description: Related Article: Lang Liu, Changting Wen, Guojin Sun, Yao Li, Jun Zhang, Zhe Zhang, Zesi Wang, Mengyao She, Ping Liu, Shengyong Zhang, Jianli Li|2023|Org.Lett.|25|1530|doi:10.1021/acs.orglett.3c00322
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c9c9c
title: CCDC 2183742: Experimental Crystal Structure Determination

description: Related Article: Lang Liu, Changting Wen, Guojin Sun, Yao Li, Jun Zhang, Zhe Zhang, Zesi Wang, Mengyao She, Ping Liu, Shengyong Zhang, Jianli Li|2023|Org.Lett.|25|1530|doi:10.1021/acs.orglett.3c00322
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c9cbd
title: CCDC 2183743: Experimental Crystal Structure Determination

description: Related Article: Lang Liu, Changting Wen, Guojin Sun, Yao Li, Jun Zhang, Zhe Zhang, Zesi Wang, Mengyao She, Ping Liu, Shengyong Zhang, Jianli Li|2023|Org.Lett.|25|1530|doi:10.1021/acs.orglett.3c00322
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c9ccf
title: CCDC 2183744: Experimental Crystal Structure Determination

description: Related Article: Lang Liu, Changting Wen, Guojin Sun, Yao Li, Jun Zhang, Zhe Zhang, Zesi Wang, Mengyao She, Ping Liu, Shengyong Zhang, Jianli Li|2023|Org.Lett.|25|1530|doi:10.1021/acs.orglett.3c00322
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cj086
title: CCDC 2190127: Experimental Crystal Structure Determination

description: Related Article: Lang Liu, Changting Wen, Guojin Sun, Yao Li, Jun Zhang, Zhe Zhang, Zesi Wang, Mengyao She, Ping Liu, Shengyong Zhang, Jianli Li|2023|Org.Lett.|25|1530|doi:10.1021/acs.orglett.3c00322
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ck3rt
title: CCDC 2191196: Experimental Crystal Structure Determination

description: Related Article: Ozana Mišura, Mateja Pisačić, Mladen Borovina, Marijana Đaković|2023|Cryst.Growth Des.|23|1318|doi:10.1021/acs.cgd.2c01397
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cnft9
title: CCDC 2194391: Experimental Crystal Structure Determination

description: Related Article: Zhenlu Ge, Alan J. Lough, Mark S. Taylor|2023|Can.J.Chem.|101|205|doi:10.1139/cjc-2022-0200
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cnfvb
title: CCDC 2194392: Experimental Crystal Structure Determination

description: Related Article: Zhenlu Ge, Alan J. Lough, Mark S. Taylor|2023|Can.J.Chem.|101|205|doi:10.1139/cjc-2022-0200
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cxp22
title: CCDC 2202304: Experimental Crystal Structure Determination

description: Related Article: Hongpeng Bao, Yongjin Guo, Jiarong Shi, Yang Li|2023|Org.Lett.|25|1514|doi:10.1021/acs.orglett.3c00304
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d3k8c
title: CCDC 2207952: Experimental Crystal Structure Determination

description: Related Article: Jiarui Chang, Man Ding, Jie Zhang, Xuenian Chen|2023|Organometallics|42|407|doi:10.1021/acs.organomet.2c00658
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d3k9d
title: CCDC 2207953: Experimental Crystal Structure Determination

description: Related Article: Jiarui Chang, Man Ding, Jie Zhang, Xuenian Chen|2023|Organometallics|42|407|doi:10.1021/acs.organomet.2c00658
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d3kbf
title: CCDC 2207954: Experimental Crystal Structure Determination

description: Related Article: Jiarui Chang, Man Ding, Jie Zhang, Xuenian Chen|2023|Organometallics|42|407|doi:10.1021/acs.organomet.2c00658
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d8v8t
title: CCDC 2213036: Experimental Crystal Structure Determination

description: Related Article: Guoxiang Zhang, Hui He, Xiaoxiao Chen, Shao-Fei Ni, Rong Zeng|2023|Org.Lett.|25|1600|doi:10.1021/acs.orglett.3c00508
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dl9z9
title: CCDC 2222141: Experimental Crystal Structure Determination

description: Related Article: Gao Ying, Ke Sun, Yingbo Lv, Haichao Liu, Shi-Tong Zhang, Bing Yang|2023|Dyes Pigm.|213|111196|doi:10.1016/j.dyepig.2023.111196
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dlycb
title: CCDC 2222742: Experimental Crystal Structure Determination

description: Related Article: Anton V. Chernykh, Oleksandr V. Kudryk, Oleksandr S. Olifir, Alexey V. Dobrydnev, Eduard Rusanov, Viktoriia S. Moskvina, Dmitriy M. Volochnyuk, Oleksandr O. Grygorenko|2023|J.Org.Chem.|88|3109|doi:10.1021/acs.joc.2c02892
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dlydc
title: CCDC 2222743: Experimental Crystal Structure Determination

description: Related Article: Anton V. Chernykh, Oleksandr V. Kudryk, Oleksandr S. Olifir, Alexey V. Dobrydnev, Eduard Rusanov, Viktoriia S. Moskvina, Dmitriy M. Volochnyuk, Oleksandr O. Grygorenko|2023|J.Org.Chem.|88|3109|doi:10.1021/acs.joc.2c02892
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.