cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/028-3ff-l08
title: †Rhynchotrema Hall, 1860

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6k8-yks-qk1
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/gx8cnzbpgj
title: Norovirus Files

description: Design of multi-epitope based vaccines for Norovirus. These Norovirus data were subsequently screened for complete structural protein selection via VaxiJen v2.0 to predict antigenic proteins. Depending on T-cell and B-cell epitope prediction, these antigenic peptides are further screened based on major histocompatibility complex (MHC) class I binding, proteasomal C terminal cleavage, and TAP transport efficiency using NetCTL1.2 Server. The promising epitopes were then selected, based on  toxicity (ToxinPred), antigenicity (VaxiJen v2.0), allergenicity (AllerTop v.2.0), conservancy (ECA IEDB Suite), and higher immunogenicity (C1I IEDB Suite) filtration. These epitopes should then be identified by (MHC) I alleles and MHC II alleles which are present in the endoplasmic reticulum, so that it can bind to them, and can be brought to the surface of the cell, where a T-cell and a B-cell can identify to produce an antibody. In order to bind these epitopes with alleles, the 3D structures of epitopes were generated and the corresponding allele was retrieved from RCSB to perform docking. The stability and conformational changes of these two bindings along with their dynamic interactions are then analyzed, through molecular dynamics.
DOI: 10.3535/baq-0nj-xq1
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cy9-s3s-8wd
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26488296.v1
title: Additional file 1 of Single-cell tumor heterogeneity landscape of hepatocellular carcinoma: unraveling the pro-metastatic subtype and its interaction loop with fibroblasts

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.7461440.v1
title: Effects of concurrent exercise on cardiometabolic status during perimenopause: the FLAMENCO Project

description: <b>Objectives:</b> The aim of this study was to evaluate the influence of a 4-month concurrent exercise training program on cardiometabolic status in perimenopausal women. <b>Methods:</b> The participants (<i>n</i> = 150) were randomized into counseling (<i>n</i> = 75) and exercise (<i>n</i> = 75) groups. The exercise group followed 4-month (3 days/week, 60 min/session) concurrent training. The counseling group attended conferences on a healthy lifestyle. We determined plasma glucose, total cholesterol, high-density lipoprotein cholesterol (HDL-C), low-density lipoprotein cholesterol (LDL-C), triglycerides, and C-reactive protein, and measured blood pressure and the resting heart rate. <b>Results:</b> In the per-protocol analyses, the exercise group showed lower LDL-C concentrations than the counseling group when the model was further adjusted for the baseline values and diet (10.2 mg/dl; 95% confidence interval −19.4, −0.96; <i>p</i> = 0.031). Borderline significant total cholesterol and diastolic blood pressure were reduced in both groups with better results in exercise group (<i>p</i> = 0.068 and <i>p</i> = 0.090, respectively). <b>Conclusion:</b> The present findings suggest that the concurrent exercise training program could improve plasma glucose, lipid profile, CRP, and systolic and diastolic blood pressures in the exercise group. These results also suggest the importance of a healthy diet and active behavior during menopause, as improvements in both the exercise and the counseling group were observed. Future analysis should combine both interventions in search of better results.
DOI: 10.3535/c7b-v6s-vmt
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vz8-633-dw9
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25569879.v1
title: data

description: Biomechanical characteristics of backhand stroke accuracy in squash based on kinematic variables between two different skill levels
DOI: 10.17632/zgv397zfv7
title: Sample Point Data of Farmland Quality Monitoring in Quanzhou City, Fujian Province (2018–2020)

description: This dataset includes sample point number, location, administrative district name, latitude and longitude coordinates, soil type, sampling depth, organic matter, pH, alkaline hydrolysis nitrogen, available potassium, available phosphorus, soil sand content, silt content, clay content, and other related parameters.
DOI: 10.3535/pse-pee-zvx
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t8s-p7b-t9g
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24495337.v1
title: Randomized Controlled Trial of Patching versus Dichoptic Stimulation Using Virtual Reality for Amblyopia Therapy

description: <b>Purpose:</b> To compare the outcomes of patching to dichoptic stimulation using virtual reality (VR) in moderate and severe amblyopia. <b>Methods:</b> This study was conducted on 86 subjects with unilateral anisometropic and mixed amblyopia. The subjects were randomized to the VR or patching group. The VR group received treatment using the Vivid Vision software (Vivid Vision Inc., San Francisco, USA) with each subject receiving weekly 2 h-sessions for 10 weeks. The patching group was prescribed patching for 10 weeks. Best-corrected visual acuity (BCVA) was measured using a single crowded letter in an ETDRS chart before, after 10 weeks of treatment, and after another 10 weeks of cessation of treatment. Near stereoacuity was measured using the TNO test. <b>Results:</b> Forty-two patients were randomized to the patching group and 44 to the VR group. The median age of the subjects was 12.0 (range 6.0 to 37.0) years. In the VR group, mean amblyopic eye BCVA showed statistically significant improvement by 0.89 line (95% confidence interval {CI}, 0.73 to 1.35 lines; <i>p</i> &lt; 0.001) after 10 weeks of therapy, and after another 10 weeks of follow-up by 1.32 lines from baseline (95% CI, 1.15 to 1.7 lines; <i>p</i> &lt; 0.001). Regarding the patching group, mean BCVA showed statistically significant improvement after 10 weeks by 1.38 lines (95% CI, 0.82 to 1.8 lines; <i>p</i> &lt; 0.001), and after another 10 weeks by 1 line from baseline (95% CI, 0.06–0.147; 0.6 to 1.47 lines; <i>p</i> &lt; 0.001). There was no significant difference between both groups at any time-point (<i>p</i> values &gt;0.05). No serious adverse events were noted. Adults and severe amblyopes in the VR group showed more significant VA improvement than their counterparts in the patching group. <b>Conclusions:</b> Amblyopes treated using VR dichoptic treatment demonstrated statistically significant VA improvement after 10 and 20 weeks of follow-up that is comparable to patching.
DOI: 10.6084/m9.figshare.25097522.v1
title: SNP .xlsx

description: This study aimed to investigate the relationship between single nucleotide polymorphisms (SNPs) in TXKandKCNIP4 genes and growth traits in Ashidan yaks and to search for potential molecular marker loci that can influence Ashidan yak breeding. A cGPS liquid microarray was used to genotype 232 Ashidan yaks and to analyse correlations between two SNPloci in the TXK and KCNIP4 genes and yak body weight, body height, body length,chest circumference atindifferent periods. The TXKgene g.55,999,531C&gt;T locus and KCNIP4gene g.84,567,697C&gt;A locus were significantly associated with Ashidan yak growth traits.
DOI: 10.6084/m9.figshare.27627372.v2
title: Chapter 3 Supplementary files

description: Data tables for all LA-ICP-MS monazite sessions, XRF bulk geochemistry, Perple_X diagrams for all samples modelled, and TIMA images with phase weight % included in the legend.
DOI: 10.6084/m9.figshare.813315.v1
title: Arhopalus ferus (Cerambycidae) hydrogen isotope data as a place of origin marker

description: Hydrogen stable isotope data (δ2H) from the flight wings of Arhopalus ferus [Coleoptera: Cerambycidae] reference samples in New Zealand and specimens collected from aboard the container ship Tatiana Schulte as she transited from New Zealand to Australia, February 2010. The data was used to determine the likely place of origin of the Tatiana Schulte infestation.
DOI: 10.17632/xbywjx358m
title: Inter-electron repulsion integrals for three-open-shell configurations in cubic symmetry

description: Title of program: TRIO Catalogue Id: AAKT_v1_0 Nature of problem Molecules of high symmetry containing incompletely filled electronic shells, such as transition metal complexes, have excited states whose energies are determined by differences in one-electron orbital energies and changes in electron repulsion energy as the electrons are rearranged on going from the ground to the excited states. This program calculates the contribution of electron repulsion to the energies of electronic-states containing three open shells. It is especially useful for charge tra ... Versions of this program held in the CPC repository in Mendeley Data AAKT_v1_0; TRIO; 10.1016/0010-4655(78)90021-8 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.3535/vmy-p0j-z8l
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z30-3w2-7y3
title: Cornulitidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19589902.v1
title: The 'Regesta' of Nicholas I Dataset

description: This is a selective data set covering 286 entries of Nicholas I's correspondence, with the information and contents translated from the Regesta Imperrii (<em><strong>Die Regesten des Kaiserreiches unter den Karolingern 751-918. Band 4, Papstregesten 800-911, </strong></em><strong>vol. 2/2 ed. Klaus Herbers (Cologne 2012), n.421-870, available online at </strong><strong>http://www.regesta-imperii.de/regesten/1-4-2-papstregesten.html</strong> ). All translations were edited and made using the free translator DeepL (https://www.deepl.com/en/translator). Selections were made on the basis of trying to limit it to Nicholas's most important literal correspondence, and so excluding grants, copies of synods, and gifts etc. Forgeries were also not included. Hopefully the data can be used as a useful tool for producing visualisations and anlaysing his correspondence.
DOI: 10.3535/rb2-1b1-2cj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/s7l-k6e-n95
title: Belonechitina latifrons

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/vf95364vx6
title: DNA alignments used for the new phylogenetic analyses in Valente et al. (Nature)

description: 80 DNA alignments used for the new phylogenetic analyses conducted for the study Valente et al. Nature. Includes the new sequences generated for this study, as well as all the sequences downloaded from GenBank from previous studies. GenBank accession numbers are provided for all the sequences. (Publication: Luis Valente, Albert B. Phillimore, Martim Melo, Ben H. Warren, Sonya M. Clegg, Katja Havenstein, Ralph Tiedemann, Juan Carlos Illera, Christophe Thébaud, Tina Aschenbach, Rampal S. Etienne. A simple dynamic model explains island bird diversity worldwide. Nature).
DOI: 10.3535/2f8-36y-p0f
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/za5-hfl-1yl
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1114807.v1
title: Plotting SNP Density along Multiple Sequence Alignment

description: The R-script takes SNP positions along a multiple sequence file and plots along the MSP. It also takes start and end position of exons, genomic segments along with MSP.
DOI: 10.6084/m9.figshare.14251400.v1
title: Columbine Lake varve measurements from observer 1, 2, and 3

description: Varve delineation and quality measurements from observers 1, 2, and 3 for Columbine Lake, CO. Zip file contains measurement files from two cores (COL17-2 and COL17-3). Each subfolder contains three files per slide (.dbf, .shp, .shx). Each slide name contains the depth (e.g. 0-7 cm). The files can be opened with ArcGIS or in R.
DOI: 10.17632/78xx9wtmnf
title: Data for: Can we detect centennial sea-level variations over the last three thousand years in Israeli archaeological records?

description: Dataset of Late Holocene relative sea-level indicators from Israel. Indicators are primarily archaeological with some biological indicators included as well.
DOI: 10.3535/1yr-gmc-vsf
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t85-k94-4cw
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.18765881.v2
title: Sex Ratio at Birth by Nepal Province Database

description: Additional file 2: Sex ratio at birth by Nepal Province Database.<br>Dataset for:Chao, F., KC, S. & Ombao, H. Estimation and probabilistic projection of levels and trends in the sex ratio at birth in seven provinces of Nepal from 1980 to 2050: a Bayesian modeling approach. <i>BMC Public Health</i> 22, 358 (2022). https://doi.org/10.1186/s12889-022-12693-0<br>
DOI: 10.17632/4n5x4ffzn5
title: Data marital quality of Javanese people's using rasch model

description: This research data is one of psychometric properties of measurement tool of marital quality of Javanese people and it was analyzed using Rasch model. There were 840 subjects (or 420 husband-wife couples) in this research coming from Java Island, Indonesia represented by 4 regions: Special District of Yogyakarta, Solo, Banyumas, and Pekalongan. The estimation of item parameter was conducted using QUEST program. The Threshold parameter and fit model in each item was presented in the appendix. The data of the results of the research furthermore could be practically used to measure the marital quality of Javanese people.
DOI: 10.3535/an1-hjw-7r5
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/med-k5l-8mb
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11980026.v1
title: The Economy Principle of Language Formation

description: These datasets are language productions of all participants during three days of training. Data from each participant is consisted of three Excel files, in which include the order of verb and subject-object, video names that they saw, and their production during tests. The texts highlighted are the production language.
DOI: 10.3535/fnr-1kc-9yy
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sja-yxh-p4p
title: Conochitina aff. proboscifera

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5gz-mj5-zh8
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7h1-454-8sz
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8pm-dbb-8r3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11796186.v1
title: ks_test.npy

description: Solutions of the KS equation for random initial conditions. Used to evaluate FiniteNet performance.
DOI: 10.3535/5za-wh3-9sj
title: Icriognathus cornutus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/txj-bxn-ds3
title: Tabulata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1564716.v2
title: Thomson Reuters y las altmetrics: usage counts frente a citation counts en la Web of Science

description: Datos empíricos utilizados en el working paper "Thomson Reuters y las altmetrics: usage counts frente a citation counts en la Web of Science". Contiene el listado de documentos extraído de WoS, y los análisis por revistas y categorías realizados.
DOI: 10.6084/m9.figshare.16571756.v1
title: WAF-100.csvWindage alteration fault diagnosis datasets

description: The dataset and code for mine ventilation network's windage alteration fault diagnosis.
DOI: 10.6084/m9.figshare.24155718.v1
title: Pet ownership and nature connection

description: Two data sets, one for adults and one for children.
DOI: 10.6084/m9.figshare.3513512.v1
title: Appendix B. Evaluating climate effects on distribution of individual taxa.

description: Evaluating climate effects on distribution of individual taxa.
DOI: 10.6084/m9.figshare.c.3816301_d7.v1
title: Additional file 16: of Deep Super-SAGE transcriptomic analysis of cold acclimation in lentil (Lens culinaris Medik.)

description: List of the identified functions related to the differentially expressed tags. SuperSAGE tags from acclimated lentil plants considering both genotypes – susceptible and tolerant – together. (XLSX 15 kb)
DOI: 10.25378/janelia.5476798.v2
title: Bovine Papillomavirus CryoEM Image Data

description: Papillomaviruses, members of a group of dsDNA viruses associated with epithelial growths and tumors, have compact capsids assembled from 72 pentamers of the protein L1. We have determined the structure of bovine papillomavirus by electron cryomicrosopy (cryoEM), at ∼3.6 Å resolution. The density map, obtained from single-particle analysis of ∼4,000 particle images, shows the trace of the L1 polypeptide chain and reveals how the N- and C-terminal “arms” of a subunit (extensions from its β-jelly-roll core) associate with a neighboring pentamer. Critical contacts come from the C-terminal arm, which loops out from the core of the subunit, forms contacts (including a disulfide) with two subunits in a neighboring pentamer, and reinserts into the pentamer from which it emanates. This trace corrects one feature of an earlier model. We discuss implications of the structure for virion assembly and for pathways of infectious viral entry. We suggest that it should be possible to obtain image reconstructions of comparable resolution from cryoEM images of asymmetric particles. From the work on papillomavirus described here, we estimate that such a reconstruction will require about 1.5 million images to achieve the same number of averaged asymmetric units; structural variability will increase this number substantially.Data descriptionLinked at right is a stack (16 GB) of 5,546 images (MRC/CCP4 format) of bovine papillomavirus (BPV [1]) collected at 300 kV and a calibrated magnification of 56,588, giving a pixel size on the specimen of 1.237 Å. Alignment parameters determined by Frealign for each particle in the stack can also be found below, as well as a reconstruction of BPV (also MRC/CCP4 format). Ewald sphere and beamtilt correction were performed. The atomic coordinates contain the coordinates from one subunit (3IYJ.pdb) and the five surrounding subunits to enable exploration of inter-subunit contacts.
DOI: 10.3535/5zt-19r-kg0
title: Aulacognathus cf. antiquus Bischoff

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ttj-3ll-kvj
title: Tabulata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16529214.v1
title: BODIPYs

description: The BODIPYs dataset contains (gas phase) DFT level geometries and TDDFT level properties of the S<sub>0</sub> → S<sub>1</sub> first electronic excited state of 77,412 molecules derived from the BODIPY dye by combinatorial substitution.<br>For more details see: https://moldis-group.github.io/BODIPYs/<br>Contact: ramakrishnan@tifrh.res.in, raghu.rama.chem@gmail.com<br>
DOI: 10.6084/m9.figshare.19388213.v1
title: TMA and clinical data from KIM-1 RCC dataset

description: TMA and clinical data from KIM-1 RCC dataset
DOI: 10.3535/9jw-wtq-b8b
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wzs-e7y-vpf
title: Conochitina cf. proboscifera

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24107433.v2
title: <b>Assessing Awareness and Perception of Forest and Biodiversity Conservation Importance among Education and Faith-based Groups in Southeastern Nigeria</b>

description: The data provide information on the awareness of forest and biodiversity conservation importance among faith-based groups and educational institutions, specifically clergies, teachers and students. The numbering in the first row of the data corresponds with the numbering in the questionnaire.
DOI: 10.3535/rm9-wed-c1h
title: Lingulata Gorjansky & Popov, 1985

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yn2-jav-z8j
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24236782.v1
title: Supplemental Appendix 6, Mulroy et al. 2023, Three new Dudleya taxa from Baja CA, Mexico

description: Supplemental Appendix 6 associated with Mulroy et al. 2023, THREE NEW DUDLEYA TAXA (CRASSULACEAE) FROM COASTAL NORTHWESTERN BAJA CALIFORNIA,MÉXICO
DOI: 10.17632/xx78vvg24n
title: EAM-EDIT 2

description: Information merged of he Annual Manufacturing Survey (EAM) and The Technological Development and Innovation Survey (EDIT)
DOI: 10.3535/404-37e-zhz
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kmg-stp-l5g
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28415357.v1
title: <b>Immunogenic Cell Death Inspired Personalized Cancer Vaccine</b>-source-data.xlsx

description: The original data for the project: Immunogenic Cell Death Inspired Personalized Cancer Vaccine
DOI: 10.6084/m9.figshare.7012256.v1
title: Kebara 2 spine and thorax reconstruction.zip

description: Files in .ply format of the reconstructed spine and thorax of the Kebara 2 Neandertal individual. Reconstruction process described in Gómez-Olivencia et al., in press<br>
DOI: 10.3535/qs6-511-syk
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tma-4b7-1tj
title: †Eostropheodonta Bancroft, 1949

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.