cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p976lz2g
title: Data release for Influence of multi-decadal land use, irrigation practices and climate on riparian corridors across the Upper Missouri River headwaters basin, Montana

description: The Upper Missouri River headwaters (UMH) basin (36 400 km2 ) depends on its river corridors to support irrigated agriculture and world-class trout fisheries. We evaluated trends (1984-2016) in riparian wetness, an indicator of the riparian condition, in peak irrigation months (June, July and August) for 158 km2 of riparian area across the basin using the Landsat normalized difference wetness index (NDWI). We found that 8 of the 19 riparian reaches across the basin showed a significant drying trend over this period, including all three basin outlet reaches along the Jefferson, Madison and Gallatin rivers. The influence of upstream climate was quantified using per reach random forest regressions. Much of the interannual variability in the NDWI was explained by climate, especially by drought indices and annual precipitation, but the significant temporal drying trends persisted in the NDWI-climate model residuals, indicating that trends were not entirely attributable to climate. Over the same period we documented a basin-wide shift from 9% of agriculture irrigated with center-pivot irrigation to 50% irrigated with center-pivot irrigation. Riparian reaches with a drying trend had a greater increase in the total area with center-pivot irrigation (within reach and upstream from the reach) relative to riparian reaches without such a trend (p &lt; 0.05). The drying trend, however, did not extend to river discharge. Over the same period, stream gages (n = 7) showed a positive correlation with riparian wetness (p &lt; 0.05) but no trend in summer river discharge, suggesting that riparian areas may be more sensitive to changes in irrigation return flows relative to river discharge. Identifying trends in riparian vegetation is a critical precursor for enhancing the resiliency of river systems and associated riparian corridors.
DOI: 10.5281/zenodo.3583357
title: Formal Ontologies in Information Systems Development: a Systematic Review

description: Information resources considered in single PRISMA stages.
DOI: 10.5281/zenodo.3583358
title: Formal Ontologies in Information Systems Development: a Systematic Review

description: Information resources considered in single PRISMA stages.
DOI: 10.6073/pasta/c485d6cd55dfaed28ea8d9985816a63d
title: Water Quality Data (Extensive) from the Taylor Slough, Everglades National Park (FCE), South Florida from July 1999 to Present

description: Water quality samples are being collected using ISCO autosamplers at all wetland sites (that is, all sites except TS/Ph-9, 10, and 11). The autosamplers contain 24 1L bottles. Water is sampled by programming the autosamplers to take composite samples once every 3 days. These samples are a composite of four 250mL subsamples drawn every 18 hours (a sampling scheme that captures a dawn, noon, dusk, and midnight sample in every three day composite). The samples are collected every 3-4 weeks and analyzed for total phosphorus (TP), total nitrogen (TN), and salinity. When sites are visited to collect these samples, we also collect a grab sample that is immediately put on ice. A portion of these grab samples is filtered through a Whatman GF/F filter immediately upon return to the lab, and the filtered samples are analyzed for inorganic nutrients such as NO2-, NO3-, NH4+, SRP, and DOC. The unfiltered fraction of these grab samples is analyzed for TP, TN, and TOC. We use these monthly grab samples to generate relationships between TP and SRP, and between TN and NO2- + NO3- + NH4+. Dissolved nutrients are measured using standard rapid flow analyzer (RFA) techniques. TP is analyzed with a modified Solorzano and Sharp (1980) technique. TN is measured with an Antec TN analyzer, TOC and DOC are quantified on a Shimadzu TOC Analyzer, and salinity is measured with an YSI conductivity meter. In addition to the regular water quality monitoring, we use the rain level actuators at all freshwater sites to trigger water sampling after rain events exceed a given threshold of duration and/or intensity. As currently programmed, when the threshold of = 2.5 cm of rain per hour is passed, the autosampler at that site collects a 500mL sample 30 minutes after the threshold has been reached. Rain event samples are collected, treated, and analyzed as all other water quality samples.
DOI: 10.15784/601232
title: Amino acid nitrogen isotope values of penguins from the Antarctic Peninsula region 1930s to 2010s

description: This data set contains measurements of nitrogen (δ15N) stable isotope values of twelve individual amino acids from breast feathers of gentoo penguins (Pygoscelis papua) and chinstrap penguins (Pygoscelis antarctica) collected from museum archives between the 1930s and 2010s. Stable isotope analyses were conducted using a gas chromatograph coupled to a continuous flow stable isotope ratio mass spectrometer. The data set also includes trophic positions of penguins calculated from individual amino acid δ15N values. The data set indexes each individual penguin with species, collection institution, catalog number, sex, locality, latitude, longitude, year of sample collection, nitrogen isotope ratios, and calculated trophic position. Details of the data set and all relevant methods are provided in McMahon et al. 2020 Proc Natl Acad Sci DOI: 10.1073/pnas.1913093116
DOI: 10.5281/zenodo.3237484
title: Das Wertpapierhandelsgesetz (1994–2019): Eine quantitative juristische Studie (Online-Anhang)

description: Online-Anhang zu "Das Wertpapierhandelsgesetz (1994–2019): Eine quantitative juristische Studie".
DOI: 10.5281/zenodo.3237485
title: Das Wertpapierhandelsgesetz (1994–2019): Eine quantitative juristische Studie (Online-Anhang)

description: Online-Anhang zu "Das Wertpapierhandelsgesetz (1994–2019): Eine quantitative juristische Studie".
DOI: 10.17632/sgg79tm575.1
title: Data for: Novel eco-friendly ionic liquids to solubilize seven hydrophobic pesticides

description: For some data that not directly reflected in the manuscript, we have put them into word files named research data.This includes the original data about measuring CMC value , the original viscosity measurement data and processing data, as well as the original 1H NMR spectra before and after adding pesticides for four ILs.
DOI: 10.17632/zp4v3y8wph.1
title: Data for: Assessing the Impact of Drug Courts on Provider-Directed Marketing Efforts by Manufactures of Medications for the Treatment of Opioid Use Disorder

description: Processed data for analyses in our manuscript
DOI: 10.34619/nqsj-kh55
title: Integrating flux balance analysis into kinetic models to decipher the dynamic metabolism of Shewanella oneidensis [Datasets]

description: Data from the manuscript: Feng X, Xu Y, Chen Y, Tang YJ. Integrating flux balance analysis into kinetic models to decipher the dynamic metabolism of Shewanella oneidensis MR-1. PLoS Comput Biol. 2012;8(2):e1002376. doi:10.1371/journal.pcbi.1002376
DOI: 10.17632/r66kb3gdtr.1
title: Data for: Paleoproterozoic (ca. 1.87–1.69 Ga) arc-related tectonothermal events on northcentral Yeongnam Massif, South Korea and its tectonic implications: Insights from metamorphism, geochemistry and geochronology.

description: This data provide raw data for geochemical and geochronological data in this study
DOI: 10.5281/zenodo.3583722
title: London's Ghost Acres British Imports 1856-1906 Database

description: Starting in 2014, I have been working with students and colleagues to create a database of trade statistics for the nineteenth century with a focus on the British World. I am posting the core of the database, which has been error checked and included all British imports for every fifth year from 1856 to 1906. The sources are a series of documents in the Nineteenth Century and Twentieth Century House of Commons Sessional Papers, with titles that begin with ‘Annual Statement of the Trade and Navigation of the United Kingdom’ until 1870 and the ‘Annual Statement of Trade of United Kingdom’ through to the twentieth century. They were all accessed through the ProQuest UK Parliamentary Papers. Everything in this database has been error checked, but if you ever want to double-check you can simply sum the quantities or values from individuals sources excluding “World” and compare it with the total from the World to see if they match.
description: Funded by the Social Science and Humanities Research Council (Canada)
DOI: 10.5281/zenodo.3583723
title: London's Ghost Acres British Imports 1856-1906 Database

description: Starting in 2014, I have been working with students and colleagues to create a database of trade statistics for the nineteenth century with a focus on the British World. I am posting the core of the database, which has been error checked and included all British imports for every fifth year from 1856 to 1906. The sources are a series of documents in the Nineteenth Century and Twentieth Century House of Commons Sessional Papers, with titles that begin with ‘Annual Statement of the Trade and Navigation of the United Kingdom’ until 1870 and the ‘Annual Statement of Trade of United Kingdom’ through to the twentieth century. They were all accessed through the ProQuest UK Parliamentary Papers. Everything in this database has been error checked, but if you ever want to double-check you can simply sum the quantities or values from individuals sources excluding “World” and compare it with the total from the World to see if they match.
description: Funded by the Social Science and Humanities Research Council (Canada)
DOI: 10.17632/zjjp4xfx27.1
title: Data for: Hydrological effects of a dryland tree invasion; assessment based on airborne-LiDAR, surface, and subsurface data

description: Data for transect plots as detailed in manuscript and metadata. Transpiration, stem water stable isotopes, soil resistivity data.
DOI: 10.6084/m9.figshare.11405523.v1
title: data

description: A sample dataset and relative software that support the findings of the present study are available. Exploring the impact factors and their interactions of dockless bike sharing usage: A case study in Shenzhen, China
DOI: 10.17632/5n2b4pyx2m.1
title: Data for: Synthesis and chemical transformations of diazolyl α,α-difluoroacetates
DOI: 10.26195/5dfac3c1a9619
title: Expert Nation Database - Arts Scholars Data - Degree and career information 1919-1939
DOI: 10.5281/zenodo.3583449
title: Synthetic Datasets for Using synthetic datasets to bridge the gap between the promise and reality of basing health-related decisions on common single nucleotide polymorphisms

description: Synthetic Dataset for Using synthetic datasets to bridge the gap between the promise and reality of basing health-related decisions on common single nucleotide polymorphisms, as published on F1000Research.
DOI: 10.5281/zenodo.3583450
title: Synthetic Datasets for Using synthetic datasets to bridge the gap between the promise and reality of basing health-related decisions on common single nucleotide polymorphisms

description: Synthetic Dataset for Using synthetic datasets to bridge the gap between the promise and reality of basing health-related decisions on common single nucleotide polymorphisms, as published on F1000Research.
DOI: 10.17632/x76xrxgy85.1
title: Data for: ITC and SPR Analysis Using Dynamic Approach

description: Matlab codes for ITC, SPR simulations and links to download global sensitivity analysis codes used in this work
DOI: 10.5281/zenodo.3570311
title: Data for Bovine breed-specific augmented reference graphs facilitate accurate sequence read mapping and unbiased variant discovery

description: <strong>Description of the datasets</strong> Data are organized as folders and compressed with tar.gz. There are two compressed data folder: <strong>data </strong>which used for cattle genome graphs experiment and <strong>data_human</strong> which we used for human genome graphs experiment. <strong>Cattle genome graphs experiments</strong> First you need to unzip the file using command <em>tar -xvzf data.tar.gz</em>. After unzipping, the data folder is organized as follows: Utilities: contain bovine ARS-UCD 1.2 fasta reference with the accompanying index. Bin: contain the softwares used in the paper (vg, liftover, vcf2diploid) Part1: data for analysis in variant prioritization section, further subdivided into: vcf_sim: variant files from four animal in each breed used to simulate reads reads_sim: simulated short reads used for read mapping vcf_freq: variants augmented to graphs filtered based on allele frequency Part2: data used for analysis in the section of graph mapping with breeds-filtered variants, further subdivided into: vcf_breed: variant files used to graphs construction. Part3: data used for analysis in the section of consensus genome, further subdivided into: read_sims: simulated reads as in the part1, but the coordinates are liftovered to the new consensus genomes. reference: contain the original reference and consensus references. vcf_consensus: contain major allele variants to construct consensus genomes. Part4: data analysis in the section of whole genome graph construction and variant genotyping. vcf_construct: variants from chromosome 1-29 from 82 Brown Swiss used to construct BSW whole genome graph. BSW_graph: whole genome Brown Swiss graph with the three accompanying indexes (xg,gcsa, and gbwt). <strong>Human genome graphs experiments</strong> First you need to unzip the <em>data_human</em> file using command <em>tar -xvzf data</em><em>_hum.tar.gz</em>. After unzipping, the data folder is organized as follows: reference: the g1k_v37 reference used as a graph backbone vcf_sim: variant files from four individuals in each population used to simulate reads reads_sim: simulated short reads used for read mapping vcf_freq: variants augmented to graphs filtered based on allele frequency
DOI: 10.5281/zenodo.3570312
title: Bovine breed-specific augmented reference graphs facilitate accurate sequence read mapping and unbiased variant discovery

description: <strong>Description of the datasets</strong> The folder is compressed with tar.gz. First you need to unzip the file using command <em>tar -xvzf data.tar.gz</em>. After unzipping, the data folder is organized as follows: Utilities: contain bovine ARS-UCD 1.2 fasta reference with the accompanying index. Bin: contain the softwares used in the paper (vg, liftover, vcf2diploid) Part1: data for analysis in variant prioritization section, further subdivided into: vcf_sim: variant files from four animal in each breed used to simulate reads reads_sim: simulated short reads used for read mapping vcf_freq: variants augmented to graphs filtered based on allele frequency Part2: data used for analysis in the section of graph mapping with breeds-filtered variants, further subdivided into: vcf_breed: variant files used to graphs construction. Part3: data used for analysis in the section of consensus genome, further subdivided into: read_sims: simulated reads as in the part1, but the coordinates are liftovered to the new consensus genomes. reference: contain the original reference and consensus references. vcf_consensus: contain major allele variants to construct consensus genomes. Part4: data analysis in the section of whole genome graph construction and variant genotyping. vcf_construct: variants from chromosome 1-29 from 82 Brown Swiss used to construct BSW whole genome graph. BSW_graph: whole genome Brown Swiss graph with the three accompanying indexes (xg,gcsa, and gbwt).
DOI: 10.5281/zenodo.3581498
title: Extended Dataset for de novo transcriptome of Austropotamobius pallipes

description: Supporting data for the analysis of A. pallipes transcriptome Apal_assembly.fasta: Final version submitted to NCBI Transcriptome Shotgun Assembly database after merging and contaminant-removal Apal_transcript_abundance.tsv: Transcript abundance estimation generated by Kallisto Apal_assembly_cds.fna: Coding sequences in the transcriptome assembly Apal_assembly_prot.faa: Translated coding sequences in the transcritpome assembly Apal_CAZY.txt: CAZY analysis of the translated coding sequences Apal_InterProScan.tsv: InterProScan analysis output of the translated coding sequences Apal_rnabloom.fasta.gz: Initial transcriptome assembly from rnabloom Apal_rnaSpades.fasta.gz: Initial transcriptome assembly from rnaspades Apal_Trinity.fasta.gz: Initial transcriptome assembly from Trinity BUSCO.tar.gz: BUSCO output
DOI: 10.5281/zenodo.3583382
title: IO Islamic 851. Żafarnâma, History of Timûr

description: IO Islamic 851. Żafarnâma, History of Timûr
DOI: 10.5281/zenodo.3583383
title: IO Islamic 851. Żafarnâma, History of Timûr

description: IO Islamic 851. Żafarnâma, History of Timûr
DOI: 10.18112/openneuro.ds002368.v1.0.0
title: Basic Guard Duty
DOI: 10.5281/zenodo.3581499
title: Extended Dataset for de novo transcriptome of Austropotamobius pallipes

description: Supporting data for the analysis of A. pallipes transcriptome Apal_assembly.fasta: Final version submitted to NCBI Transcriptome Shotgun Assembly database after merging and contaminant-removal Apal_transcript_abundance.tsv: Transcript abundance estimation generated by Kallisto Apal_assembly_cds.fna: Coding sequences in the transcriptome assembly Apal_assembly_prot.faa: Translated coding sequences in the transcritpome assembly Apal_CAZY.txt: CAZY analysis of the translated coding sequences Apal_InterProScan.tsv: InterProScan analysis output of the translated coding sequences Apal_rnabloom.fasta.gz: Initial transcriptome assembly from rnabloom Apal_rnaSpades.fasta.gz: Initial transcriptome assembly from rnaspades Apal_Trinity.fasta.gz: Initial transcriptome assembly from Trinity BUSCO.tar.gz: BUSCO output
DOI: 10.5281/zenodo.3584606
title: IO Islamic 1985. Iftitâḥ-i- Żafarnâma, Introduction to Żafarnâma

description: IO Islamic 1985. Iftitâḥ-i- Żafarnâma, Introduction to Żafarnâma
DOI: 10.5281/zenodo.3584607
title: IO Islamic 1985. Iftitâḥ-i- Żafarnâma, Introduction to Żafarnâma

description: IO Islamic 1985. Iftitâḥ-i- Żafarnâma, Introduction to Żafarnâma
DOI: 10.5281/zenodo.3477841
title: Culture-Aware Music Recommendation Dataset

description: <strong>LFM-1b dataset extended by acoustic track features and cultural cues describing users</strong> This dataset is based on the LFM-1b dataset (cf. http://www.cp.jku.at/datasets/LFM-1b/), however, adds acoustic features describing the tracks to the original dataset as well as cultural aspects describing users (taken from Hofstede's six dimension model and the World Happiness Report) on the country-level. For the creation of the dataset, we extract all users for which the original dataset contains country information for. We extract the listening events of these users and match the tracks against the Spotify API to subsequently retrieve the acoustic features of these tracks (cf. [Spotify Audio Feature Description](https://developer.spotify.com/documentation/web-api/reference/object-model/#audio-features-object)). The final dataset contains only events of users with country information and tracks with acoustic features, which can be matched with the country-level data of the World Happiness Report and Hofstede's cultural dimensions to add cultural and socio-economic aspects for users. This new dataset contains 55,190 users 3,471,884 tracks including acoustic features 351,469,333 listening events of those users for tracks we have obtained acoustic features for Hofstede's cultural dimensions for 47 countries World Happiness Report (WHR) data for 164 countries <strong>Files</strong><br> All files are tab-separated, with no quoting of strings. The dataset contains the following files, whose content we describe in more detail in the following parts. * acoustic_features_lfm_id.tsv: acoustic features for all tracks in the dataset, identified by their LFM track identifier<br> * events.tsv: listening events for all users<br> * hofstede.tsv: Hofstede's cultural dimensions<br> * users.tsv: user metadata<br> * world_happiness_report_2018.tsv: World Happiness Report data For further information on the contents of these files, please cf. the Readme file. Please cite the following paper when using the dataset:<br> Zangerle, E., Pichl, M. and Schedl, M., 2020. User Models for Culture-Aware Music Recommendation: Fusing Acoustic and Cultural Cues. <em>Transactions of the International Society for Music Information Retrieval</em>, 3(1), pp.1–16. DOI: http://doi.org/10.5334/tismir.37
description: {"references": ["Zangerle, E., Pichl, M. and Schedl, M., 2020. User Models for Culture-Aware Music Recommendation: Fusing Acoustic and Cultural Cues. Transactions of the International Society for Music Information Retrieval, 3(1), pp.1\u201316. DOI: http://doi.org/10.5334/tismir.37"]}
DOI: 10.18112/openneuro.ds002372.v1.0.0
title: Yale_Single_Subject_Task_Rest30x
DOI: 10.5281/zenodo.3584627
title: IO Islamic 3033. Iftitâḥ-i- Żafarnâma, Introduction to Żafarnâma

description: IO Islamic 3033. Iftitâḥ-i- Żafarnâma, Introduction to Żafarnâma
DOI: 10.17632/zp4v3y8wph.2
title: Data for: Assessing the Impact of Drug Courts on Provider-Directed Marketing Efforts by Manufactures of Medications for the Treatment of Opioid Use Disorder

description: Processed data for analyses in our manuscript
DOI: 10.5281/zenodo.3584626
title: IO Islamic 3033. Iftitâḥ-i- Żafarnâma, Introduction to Żafarnâma

description: IO Islamic 3033. Iftitâḥ-i- Żafarnâma, Introduction to Żafarnâma
DOI: 10.17632/d856mc3k2y.1
title: Data for: Interrelations in Market Fears of U.S. and European Equity Markets

description: Implied volatility data from 2004-2019
DOI: 10.17632/hx46cfm8v6.1
title: Data for: Interrelations in Market Fears of U.S. and European Equity Markets

description: VIX data for US and Europe
DOI: 10.5519/qd.j24ky05o
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.3556595
title: Air-sea gas transfer velocities measured at wind speeds up to 85m/s in fresh water and seawater

description: This data set contains gas transfer velocities of 12 tracers (CF4, He, SF6, He, Kr, Pentafluoroethane, Xe, Acetylene, Hexafluorobenzene, Difluoromethane, 1,4-Difluorobenzene, Dimethyl Sulfide, Methyl Acetate) measured in the Kyoto High Speed Wind-Wave tank with fresh water and modeled seawater and the Miami SUSTAIN wind-wave tank with seawater at wind speeds up to 85m/s.
DOI: 10.5281/zenodo.3582384
title: Bulk RNA-Seq PBMC data of SLE patients and healthy volunteers/ profiling of 29 individual immune cell types as well as PBMCs of healthy donors

description: This Zenodo project contains processed gene expression data from two publicly available data sets. It includes the gene expression data of peripheral blood mononuclear cells (PBMCs) of systemic lupus erythematosus (SLE) patients as well as healthy volunteers (GSE122459). The project also comprises the bulk RNA-Seq profiling of 29 immune cell types as well as PBMCs of healthy individuals (GSE107011). In both cases, the raw RNA-Seq data was downloaded, aligned and processed. The gene expression data is available in form of a count matrix (GSE107011) or count matrix and transcript-per-million (TPM) values (GSE122459). For the latter, an annotation file is attached. Further details are provided in the information file.
DOI: 10.5281/zenodo.3582385
title: Bulk RNA-Seq PBMC data of SLE patients and healthy volunteers/ profiling of 29 individual immune cell types as well as PBMCs of healthy donors

description: This Zenodo project contains processed gene expression data from two publicly available data sets. It includes the gene expression data of peripheral blood mononuclear cells (PBMCs) of systemic lupus erythematosus (SLE) patients as well as healthy volunteers (GSE122459). The project also comprises the bulk RNA-Seq profiling of 29 immune cell types as well as PBMCs of healthy individuals (GSE107011). In both cases, the raw RNA-Seq data was downloaded, aligned and processed. The gene expression data is available in form of a count matrix (GSE107011) or count matrix and transcript-per-million (TPM) values (GSE122459). For the latter, an annotation file is attached. Further details are provided in the information file.