cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.5fn37
title: Data from: Migratory connectivity and effects of winter temperatures on migratory behaviour of the European robin Erithacus rubecula: a continent-wide analysis

description: 1. Many partially migratory species show phenotypically divergent
 populations in terms of migratory behaviour, with climate hypothesized to
 be a major driver of such variability through its differential effects on
 sedentary and migratory individuals. 2. Based on long-term (1947–2011)
 bird ringing data, we analysed phenotypic differentiation of migratory
 behaviour among populations of the European robin Erithacus rubecula
 across Europe. 3. We showed that clusters of populations sharing breeding
 and wintering ranges varied from partial (British Isles and Western
 Europe, NW cluster) to completely migratory (Scandinavia and north-eastern
 Europe, NE cluster). 4. Distance migrated by birds of the NE (but not of
 the NW) cluster decreased through time because of a north-eastwards shift
 in the wintering grounds. Moreover, when winter temperatures in the
 breeding areas were cold, individuals from the NE cluster also migrated
 longer distances, while those of the NW cluster moved over shorter
 distances. 5. Climatic conditions may therefore affect migratory behaviour
 of robins, although large geographical variation in response to climate
 seems to exist.
description: Data from Robin
 migration and climate changeVariable name
 description: ID = ID for individual robins (progressive numbers); Lat2 =
 Latitude of the site where Robin was recovered during wintering; Lon2 =
 Longitude of the site where Robin was recovered during wintering; Lat1 =
 Latitude of the site where Robin was recovered during breeding; Lon1 =
 Longitude of the site where Robin was recovered during breeding; Year =
 Year when a robin was recovered in winter (from November of year i to
 February of year i + 1); Country = Country where a robin was observed
 during the breeding period; gridID = ID of the 2.5 ° lat x 2.5° lon cell
 where the robin was observed during the breeding period; Cluster = Cluster
 to which the robin belong, as assessed by migratory connectivity analysis;
 DistMig = migration distance calculated as the great-circle (orthodromic)
 distance between breeding and wintering position (km); CminT = temperature
 anomaly for the cell where the robin was observed breeding during the
 winter when it was recovered in winter (°C); CmaxTS = temperature anomaly
 for the cell where the robin was observed breeding during the summer when
 it was recovered in winter (°C); CminAT = temperature anomaly for the cell
 where the robin was observed breeding during the autumn when it was
 recovered in winter (°C); CminT1 = temperature anomaly for the cell where
 the robin was observed breeding during the winter preceding the one when
 it was recovered in winter; pop.index = population index in the country
 where a robin was observed breeding in the year when it was recovered in
 winter (index in the reference year = 0); Adult = whether a robin was
 adult or young when recovered in winter;ErirubDryad.csv
DOI: 10.5061/dryad.b2b01n13
title: Data from: Potential fitness tradeoffs for thermal tolerance in the intertidal copepod Tigriopus californicus

description: Thermal adaptation to spatially varying environmental conditions occurs in
 a wide range of species, but what is less clear is the nature of fitness
 trade-offs associated with this temperature adaptation. Here, populations
 of the intertidal copepod Tigriopus californicus are examined at both
 local and latitudinal scales to determine whether these populations have
 evolved differences in their survival under high temperature stress. A
 clear pattern of increasing high temperature stress tolerance is seen with
 decreasing latitude, consistent with temperature adaptation. Additionally,
 there is also evidence for significant variation in thermal tolerance on a
 smaller scale. The competitive fitness of pairs of northern and southern
 copepod populations were also examined under a series of lower, more
 moderate temperatures. These fitness assays show that the southern
 populations that have the best survival under extreme high temperatures
 have lowered competitive fitness at the lower temperatures tested, whereas
 the fitness of the southern populations exceeded that of the northern
 populations at the highest temperatures tested. Combined, these results
 suggest that there may be evolutionary trade-offs between performance at
 high and stressful temperatures and fitness at moderate temperatures in
 this species.
description: Chronic heat stress for
 populations of T. californicus along a latitudinal
 gradient32_constant_parental_dryad.datAcute heat stress data for populations of T. californicus along a latitudinal gradientacute_parentals_dryad.csv
DOI: 10.5061/dryad.m7n13
title: Data from: A multigenerational effect of parental age on offspring size but not fitness in common duckweed (Lemna minor)

description: Classic theories on the evolution of senescence make the simplifying
 assumption that all offspring are of equal quality, so that demographic
 senescence only manifests through declining rates of survival or
 fecundity. However, there is now evidence that, in addition to declining
 rates of survival and fecundity, many organisms are subject to age-related
 declines in the quality of offspring produced (i.e. parental age effects).
 Recent modelling approaches allow for the incorporation of parental age
 effects into classic demographic analyses, assuming that such effects are
 limited to a single generation. Does this ‘single-generation’ assumption
 hold? To find out, we conducted a laboratory study with the aquatic plant
 Lemna minor, a species for which parental age effects have been
 demonstrated previously. We compared the size and fitness of 423
 lab-cultured plants (asexually-derived ramets) representing various birth
 orders, and ancestral ‘birth-order genealogies’. We found that offspring
 size and fitness both declined with increasing ‘immediate’ birth order
 (i.e. birth order with respect to the immediate parent), but only
 offspring size was affected by ancestral birth order. Thus, the assumption
 that parental age effects on offspring fitness are limited to a single
 generation does in fact hold for L. minor. This result will guide
 theorists aiming to refine and generalise modelling approaches that
 incorporate parental age effects into evolutionary theory on senescence.
description: Raw
 DataBirth orders and
 reproduction schedules (number of offspring released per day) for the
 focal fronds of Lemna minor used in our study.BarksAndLaird2016_JEB_RawData.csvR Scripts (Analysis)R scripts to reproduce the statistical analyses presented in our paper.BarksAndLaird2016_JEB_RScripts.RR Scripts (Figures)R scripts to reproduce the figures in our paperBarksAndLaird2016_JEB_Figures.R
DOI: 10.5281/zenodo.18382427
title: TABLE. 1 in A revised infrageneric classification of Bellevalia Lapeyr. (Asparagaceae: Scilloideae) based on molecular analysis

description: TABLE. 1. Characters used by Feinbrun (1940), Persson & Wendelbo, 1979 and Wendelbo, 1980 to distinguish sections and subsections in Bellevalia.
SectionSubsectionRaceme shapePedicel orientationPerianth venationPerianth colourLeaf length/ scape lengthCapsule shapeCilia on leaf marginNutantes [as Nutans]ColorataeCylindricalrecurved and pensileN/Aviolet, blue~1, <1rounded base, retuse apex-AlbifloraeCylindricalrecurved and pensile+White~1, <1rounded base, retuse apex-Conicae [as Conica]Orientalesconical, ovate-oblongerect to horizontal-buds violet, purple, dirty brown<1cuneate base, retuse apex+Occidentalesconical, ovate-oblongerect to horizontal-buds white<1cuneate base, retuse apex+Bellevalia [as Patens]Bellavaliacylindrical, oblong ovateerect to horizontal-purple, blue, dirty brown, white>1ovoid valves, rounded base-Cavareacylindrical, oblong ovateSessile-purple, blue, dirty brown, white>1ovoid valves, rounded base-Muscarioides-cylindrical, oblong ovateRecurved and pensile-violet, blue~1rounded+Strangweja-spike-likeascending or subsessile-pale blue>1valves elliptic to subreniform+Oxydontae-ovate-ellipticrecurved to horizontal-violet to purple~1,>1valves obovid or suborbicular with emarginated apex-
N/A: not applicable
description: Published as part of Jafari, Azarnoosh, Vaezi, Jamil, Forghanifard, Mohammad Mahdi, Forest, Félix & Manning, John C., 2021, A revised infrageneric classification of Bellevalia Lapeyr. (Asparagaceae: Scilloideae) based on molecular analysis, pp. 71 in Phytotaxa 525 (1) on page 71, DOI: 10.11646/phytotaxa.525.1.9, http://zenodo.org/record/5681869
DOI: 10.5061/dryad.93hd6
title: Data from: Subsidies mediate interactions between communities across space

description: Most spatial ecology focuses on how species dispersal affects community
 dynamics and coexistence. Ecosystems, however, are also commonly connected
 by flows of resources. We experimentally tested how neighbouring
 communities indirectly influence each other in absence of dispersal, via
 resource exchanges. Using two-patch microcosm meta-ecosystems, we
 manipulated community composition and dynamics, by varying separately
 species key functional traits (autotroph versus heterotroph species and
 size of consumer species) and trophic structure of aquatic communities
 (species growing alone, or in presence of competitors or predators). We
 then analysed the effects of species functional traits and trophic
 structure on communities connected through spatial subsidies in the
 absence of actual dispersal. Both functional traits and trophic structure
 strongly affected dynamics across neighbouring communities. Heterotroph
 communities connected to autotroph neighbours developed better than with
 heterotroph neighbours, such that coexistence of competitors was
 determined by the functional traits of the neighbouring community.
 Densities in autotroph communities were also strikingly higher when
 receiving subsidies from heterotroph communities compared to their own
 subsidies when grown in isolated ecosystems. In contrast, communities
 connected to predator-dominated ecosystems collapsed, without any direct
 contact with the predators. Our results demonstrate that because community
 composition and structure modify the distribution of biomass within a
 community, they may also affect communities connected through subsidies
 through quantitative and qualitative changes of detritus flows. This
 stresses that ecosystem management should account for such
 interdependencies mediated by spatial subsidies, given that local
 community alterations cascade across space onto other ecosystems even if
 species dispersal is completely absent.
description: Experimental
 dataData table including
 protist and bacteria densities, Daphnia magna counts and bioareas of
 protists for each microcosm and sampling date.Data_Gounand-et-al_Oikos_2016.csv
DOI: 10.5281/zenodo.18382426
title: TABLE. 1 in A revised infrageneric classification of Bellevalia Lapeyr. (Asparagaceae: Scilloideae) based on molecular analysis

description: TABLE. 1. Characters used by Feinbrun (1940), Persson & Wendelbo, 1979 and Wendelbo, 1980 to distinguish sections and subsections in Bellevalia.
SectionSubsectionRaceme shapePedicel orientationPerianth venationPerianth colourLeaf length/ scape lengthCapsule shapeCilia on leaf marginNutantes [as Nutans]ColorataeCylindricalrecurved and pensileN/Aviolet, blue~1, <1rounded base, retuse apex-AlbifloraeCylindricalrecurved and pensile+White~1, <1rounded base, retuse apex-Conicae [as Conica]Orientalesconical, ovate-oblongerect to horizontal-buds violet, purple, dirty brown<1cuneate base, retuse apex+Occidentalesconical, ovate-oblongerect to horizontal-buds white<1cuneate base, retuse apex+Bellevalia [as Patens]Bellavaliacylindrical, oblong ovateerect to horizontal-purple, blue, dirty brown, white>1ovoid valves, rounded base-Cavareacylindrical, oblong ovateSessile-purple, blue, dirty brown, white>1ovoid valves, rounded base-Muscarioides-cylindrical, oblong ovateRecurved and pensile-violet, blue~1rounded+Strangweja-spike-likeascending or subsessile-pale blue>1valves elliptic to subreniform+Oxydontae-ovate-ellipticrecurved to horizontal-violet to purple~1,>1valves obovid or suborbicular with emarginated apex-
N/A: not applicable
description: Published as part of Jafari, Azarnoosh, Vaezi, Jamil, Forghanifard, Mohammad Mahdi, Forest, Félix & Manning, John C., 2021, A revised infrageneric classification of Bellevalia Lapeyr. (Asparagaceae: Scilloideae) based on molecular analysis, pp. 71 in Phytotaxa 525 (1) on page 71, DOI: 10.11646/phytotaxa.525.1.9, http://zenodo.org/record/5681869
DOI: 10.5061/dryad.kr812
title: Data from: The role of predators in maintaining the geographic organization of aposematic signals

description: Selective predation of aposematic signals is expected to promote
 phenotypic uniformity. But while uniform within a population, numerous
 species display impressive variations in warning signals among adjacent
 populations. Predators from different localities learning to avoid
 distinct signals while performing intense selection on others are thus
 expected to maintain such a geographic organization. We tested this
 assumption by placing clay frog models, representing distinct color morphs
 of the Peruvian poison-dart frog Ranitomeya imitator and a non conspicuous
 frog, reciprocally between adjacent localities. In each locality, avian
 predators were able to discriminate between warning signals; the adjacent
 exotic morph suffered up to four times more attacks than the local one and
 two times more than the non conspicuous phenotype. Moreover, predation
 attempts on the exotic morph quickly decreased to almost nil, suggesting
 rapid learning. This experiment offers direct evidence for the existence
 of different predator communities performing localized homogenizing
 selection on distinct aposematic signals.
description: Dryad
 dataThe number of new
 predation attempts by avian and unknown predators and the models removed
 from the analysis for each model phenotype (Ranitomeya imitator and brown
 frog) after each 24h observation in both the lowland and highland sites.
 Models removed from the analysis had either disappeared or were destroyed
 by ants or roaches. At the beginning of the experiment 300 models per
 phenotype were placed in each site.
DOI: 10.5061/dryad.7h5g1
title: Data from: Weaving a tangled web: divergent and reticulate speciation in Boechera fendleri sensu lato (Brassicaceae: Boechereae)

description: Hybrid speciation is relatively common in plants compared to other
 well-studied groups. Polyploidy and apomixis are strongly associated with
 hybrid speciation, presumably due to the opportunities they provide for
 both reestablishing reproductive function in hybrids with incomplete
 chromosomal homology and creating rapid reproductive isolation in
 sympatry. Boechera, a species-rich genus closely related to Arabidopsis,
 is a particularly fertile ground for the study of hybrid speciation.
 Thirty-eight apomictic triploid hybrid species are currently recognized in
 Boechera. Recent research has shown that apomictic diploid hybrids,
 although very rare in angiosperms, are common in Boechera. Given this
 complexity, focused studies of individual species complexes are critical
 to understanding speciation and diagnosing biodiversity in Boechera. Here
 we analyze DNA sequences from seven nuclear loci and multilocus genotypes
 from 15 microsatellite markers in a group of closely related taxa formerly
 included in B. fendleri. Our results support the recognition of four
 species previously segregated from B. fendleri s. l., including three
 genetically distinct, sexual diploids (B. fendleri, B. spatifolia, and B.
 texana) and one apomictic triploid hybrid (B. porphyrea). We also identify
 four novel apomictic diploid hybrid species (B. carrizozoensis, B.
 centrifendleri, B. sanluisensis, and B. zephyra) and additional apomictic
 triploid hybrids. Our results reveal a complex network of relationships.
 Sexual diploid species can hybridize to form apomictic diploids, and
 members of these two groups can hybridize to form trigenomic, apomictic
 triploids.
description: Alexander-etal_Boechera-fendleri-sensu-lato_dataSpecimen citations, GenBank accessions for novel sequence data (locus: pistillata; cloned from hybrid members of Boechera fendleri sensu lato), and complete microsatellite data (15 nuclear microsatellite loci from 374 individuals) for molecular systmatic investigation of Boechera fendleri sensu lato.
DOI: 10.5061/dryad.09j26sv
title: Data from: Avian demographic responses to drought and fire: a community-level perspective

description: Drought stress is an important consideration for wildlife in arid and
 semi-arid regions under climate change. Drought can impact plant and
 animal populations directly, through effects on their physiology, as well
 as indirectly through effects on vegetation productivity and resource
 availability, and by creating conditions conducive to secondary
 disturbance, such as wildfire. We implemented a novel approach to
 understanding community-level demographic responses of birds and their
 habitats to these stressors in the context of climate change at 14 study
 sites in the Four Corners region of the southwestern United States. A
 large wildfire affecting three of the sites provided a natural experiment
 for also examining fire effects on vegetation and the bird community. We
 assessed: 1) trends in drought and end-of-century (2071-2100) predicted
 average drought conditions under mid-range and high greenhouse gas
 concentration trajectory scenarios; 2) effects of drought and fire on
 habitat (vegetation greenness); and 3) effects of drought and fire on
 community-level avian productivity and adult apparent survival rates.
 Drought has increased and is expected to increase further at our study
 sites under climate change. Under spring drought conditions, vegetation
 greenness and avian productivity declined, while summer drought appeared
 to negatively affect adult apparent survival rates. Response to fire was
 mixed; in the year of the fire, avian productivity declined, but was
 higher than normal for several years post-fire. Our results highlight
 important links between environmental stressors and avian vital rates that
 will likely affect population trajectories in this region under climate
 change. We suggest that the use and continued development of
 community-level demographic models will provide useful tool for leveraging
 sparse species-level data to provide multi-species inferences and inform
 conservation.
description: Data and code to support
 Saracco et al. 2018. Avian demographic responses to drought and fire: a
 community-level perspective. Ecological ApplicationsDataS1.zip
DOI: 10.5061/dryad.s4n76
title: Data from: Quantitative trait loci from the host genetic background modulate the durability of a resistance gene: a rational basis for sustainable resistance breeding in plants

description: The combination of major resistance genes with quantitative resistance
 factors is hypothesized as a promising breeding strategy to preserve the
 durability of resistant cultivar, as recently observed in different
 pathosystems. Using the pepper (Capsicum annuum)/Potato virus Y (PVY,
 genus Potyvirus) pathosystem, we aimed at identifying plant genetic
 factors directly affecting the frequency of virus adaptation to the major
 resistance gene pvr23 and at comparing them with genetic factors affecting
 quantitative resistance. The resistance breakdown frequency was a highly
 heritable trait (h²=0.87). Four loci including additive quantitative trait
 loci (QTLs) and epistatic interactions explained together 70% of the
 variance of pvr23 breakdown frequency. Three of the four QTLs controlling
 pvr23 breakdown frequency were also involved in quantitative resistance,
 strongly suggesting that QTLs controlling quantitative resistance have a
 pleiotropic effect on the durability of the major resistance gene. With
 the first mapping of QTLs directly affecting resistance durability, this
 study provides a rationale for sustainable resistance breeding.
 Surprisingly, a genetic trade-off was observed between the durability of
 PVY resistance controlled by pvr23 and the spectrum of the resistance
 against different potyviruses. This trade-off seemed to have been resolved
 by the combination of minor-effect durability QTLs under long term farmer
 selection.
description: Primary_data_Quenouille
 et alAdditional data:
 phenotypic and genotypic data for the QTL detection in the doubled haploid
 progeny. Resistance Breakdown (RB): The values indicated correspond to the
 average of the RB frequencies of two independent tests.For each test and
 each pepper line, the RB frequency was assessed by the ratio of the number
 of systemically infected plants over the total number of inoculated plants
 (30 plants per test). AUDPC : The values indicated correspond to the
 average of the AUDPC of three independent tests. For each test, symptoms
 were evaluated on the 20 plants. Virus Accumulation : The values indicated
 correspond to the average of virus accumulation independently evaluated on
 10 individual plants per DH line. For each DH line, genotypic data are
 indicated in the following way : 2 corresponds to the Perennial allele, 1
 corresponds to the YoloWonder allele. NA= missing data
DOI: 10.5061/dryad.768p8
title: Data from: Sensory information and the perception of verticality in post-stroke patients. Another point of view in sensory reweighting strategies

description: INTRODUCTION: Perception of verticality is highly related to balance
 control in human. Head-on-body tilt &lt;60° results in the E-effect,
 meaning that a tilt of the perceived vertical is observed contralateral to
 the head tilt in the frontal plane. Furthermore, somatosensory loss also
 impacts the accuracy of verticality perception. However, when several
 input sources are absent or biased, less options for sensory weighting and
 balance control occur. Therefore, this study aims to identify the E-effect
 and assess the effect of somatosensory loss on the extent of the E-effect.
 METHODS: All patients with a first stroke admitted to a Belgian
 rehabilitation hospital were eligible for inclusion. Patients aged above
 80 with other neurological and orthopaedic impairments as well as
 brainstem, cerebellar or multiple lesions were excluded. In addition,
 patients with visuospatial neglect and pusher behaviour were also excluded
 as this can affect verticality perception. The Rivermead Assessment of
 Somatosensory Performance (RASP), the Subjective Visual (SVV) and
 Subjective Postural (SPV) Vertical Test were administered. RESULTS: In
 total, 37 patients were included in the analysis of which 24 patients
 completed both SVV and SPV assessment. Results show that the E-effect
 occurred in our sample of stroke survivors for both and SPV). In addition,
 the presence of somatosensory loss will increase the E-effect in both SVV
 as SPV assessment. A significant difference in verticality perception was
 noted for both SVV and SPV between the group with no (SVV: 5.13°(6.92);
 SPV: 0.30°(1.85)) and highly severe (SVV: 10.54°(13.19); SPV: 5.96°(9.27))
 sensory loss. CONCLUSIONS: The E-effect occurs in stroke subjects and
 increases when patients experience somatosensory loss. This suggests that
 the lack of available afferent information impede estimation of
 verticality. Therefore, stroke survivors have fewer alternative input
 sources as a result of impairments, leading to fewer options about sensory
 reweighting strategies and balance recovery after perturbations.
description: Dataset_Dryad_PlosOne