cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14346008.v1
title: Supplementary Material for: Total Dietary Fat Intake, Fat Quality, and Health Outcomes: A Scoping Review of Systematic Reviews of Prospective Studies

description: <b><i>Introduction:</i></b> We conducted a scoping review of systematic reviews (SRs) on dietary fat intake and health outcomes in human adults within the context of a position paper by the “International Union of Nutritional Sciences Task force on Dietary Fat Quality” tasked to summarize the available evidence and provide dietary recommendations. <b><i>Methods:</i></b> We systematically searched several databases for relevant SRs of randomized controlled trials (RCTs) and/or prospective cohort studies published between 2015 and 2019 assessing the association between dietary fat and health outcomes. <b><i>Results:</i></b> Fifty-nine SRs were included. The findings from SRs of prospective cohort studies, which frequently compare the highest versus lowest intake categories, found mainly no association of total fat, monounsaturated fatty acid (MUFA), polyunsaturated fatty acid (PUFA), and saturated fatty acid (SFA) with risk of chronic diseases. SRs of RCTs applying substitution analyses indicate that SFA replacement with PUFA and/or MUFA improves blood lipids and glycemic control, with the effect of PUFA being more pronounced. A higher intake of total trans-fatty acid (TFA), but not ruminant TFA, was probably associated with an increased risk of mortality and cardiovascular disease based on existing SRs. <b><i>Conclusion:</i></b> Overall, the available published evidence deems it reasonable to recommend replacement of SFA with MUFA and PUFA and avoidance of consumption of industrial TFA.
DOI: 10.6084/m9.figshare.16528845.v1
title: GRSS_HOS_MAT

description: Houston University dataset in .tif and .mat format
DOI: 10.6084/m9.figshare.21668156.v4
title: Abell and Winckler Supplementary Dataset S1

description: Abell and Winckler Supplementary Dataset S1 used in:<br>"Abell and Winckler. (2023). <b>Long-term variability in Pliocene North Pacific Ocean export production and its implications for ocean circulation in a warmer world</b>"<br>submitted to <i>AGU Advances.</i>
DOI: 10.6084/m9.figshare.24059118.v1
title: GenoDive Fst and kinship result files

description: Result files generated from GenoDive to be used in the script for <i>Step 2: Genomic tool demonstration for wild east coast and cultured hard clams</i>. F<sub>st</sub> values between population comparisons (N = 17 groups) and kinship coefficients between clam samples from cultured group A.
DOI: 10.6084/m9.figshare.24247453.v1
title: Data Sets Utilized in "Simple Local Environment Descriptors for Accurate Prediction of Hydrogen Absorption and Migration in Metal Alloys" Article.

description: The dataset is sourced from the article "Simple Local Environment Descriptors for Accurate Prediction of Hydrogen Absorption and Migration in Metal Alloys." It comprises seven distinct data sets employed for training and testing machine learning models in the article. These datasets are named as follows: <br>1. HEA_TEST.csv <br>2. TS_TRAIN_ALL.csv <br>3. HEA_TRAINING_OCTA_TETRA_TS.csv <br>4. ZPE_HEA_TRAINING_OCTA_TETRA.csv <br>5. TEST_ZPE_SET.csv <br>6. TS_TEST_ALL.csv <br>7. Intermetallics.csv<br>Each dataset contains columns related to hydrogen absorption energy or zero-point energy and various descriptors, including site information, electronegativity average, average number of valence electrons, average ionization energies, mean d-band center, d-band center, mean d-band filling, mean d-band width, maximum phonon center, mean phonon center, sum phonon center, average ionic radius, average atomic radius, average van der Waals radius, average metallic radius, pore radius (in Me units), ideal pore radius (in Me units), interstitial pore type, and alloy composition.<br>This set of descriptors is versatile and can be effectively utilized for predicting hydrogen absorption energy (or zero-point energy) in different interstitial positions within High Entropy Alloys (HEA) and intermetallic alloys. The descriptors capture crucial information about the local environment, facilitating accurate predictions of hydrogen-related properties in various atomic arrangements and configurations found in these materials.
DOI: 10.6084/m9.figshare.28756439.v1
title: RAZOR Database Contents

description: Zipped RAZOR database records for: PCR primer pairs (positions, sequences, predicted physiochemical properties)Gel electrophoresis images for validated SARS-CoV-2 qPCR and standard PCR primer pairs<br>
DOI: 10.6084/m9.figshare.2953720.v1
title: Semester of Code Evaluation: Questionnaire for students

description: This document presents the questionnaire filled by the students in the Semester of Code process during the evaluation of the virtual placements performed.
DOI: 10.17632/grr4c9wn2k
title: New benchmark instances for the Cross-Dock Door Assignment Problem

description: New benchmark instances for the Cross-Dock Door Assignment Problem (CDAP), with instances from 8 origins and destinations and 4 inbound and outbound doors up to 50 origins and destinations and 30 inbound
and outbound doors. The instances have been obtained following the criteria of the paper by Nassief et al. (2016). First of all, the number of pallets to be moved from a supplier to a customer is randomly generated by using a uniform distribution U[10, 50] until reaching density values set to 25, 35, 50, and 75%. Each inbound truck sends pallets at least to one outgoing truck and each outgoing truck receives pallets from at least one incoming truck. The distance matrix is generated with numbers from the interval [8, 8 + |I|- 1], meaning that a direct distance between two doors is equal to 8, and then an increment of 1 unit is added for the next indirect door. The number of considered incoming/outgoing trucks is 8, 9, 10, 11, 12, 15, 20, and 50. The number of considered inbound/outbound doors is 4, 5, 6, 7, 10, and 30. The door capacities are equal for each instance and calculated by dividing the total flow coming from all origins by the total number of inbound doors, and then adding a capacity slackness of 5, 10, 15, 20, and 30%. To generate this set of instances, we have considered the combinations of values reported in the paper by Sayed (2020). The instances are referred to as 00×00×00x00 (number of the incoming and outgoing trucks x number of inbound and outbound doors x capacity slackness associated with the inbound/outbound doors - 5, 10, 15, 20, and 30% - x density of the flow matrix - 25, 35, 50, and 75%).
DOI: 10.57967/hf/5687
title: synthetic_python_cwe
DOI: 10.6084/m9.figshare.1155434.v1
title: Skin Characteristics Dataset 1

description: This dataset is a part of the Skin Characteristics Dataset composed of 3 parts. The individual datasets include a unique subjectID for each sample, human subject demographics (age, gender, ethnicity), fingerprint image quality, fingerprint minutiae, and skin characteristics (temperature, moisture, oiliness, and elasticity). Each dataset is a separate set of data which includes some of the same individuals. NOTE: subjectIDs are unique to the dataset. Ex: subjectID 1 in Dataset 1 is not the same as subjectID in Dataset 2 or Dataset 3.
DOI: 10.6084/m9.figshare.11576385.v3
title: The Granger Casual Relationship Between Air Pollution, Energy Productivity and Water Resources in Iran: A Markov Switching Perspective

description: <b>Abstract</b> Countries vary significantly in the measures they have taken to address climate change issues in the effort to mitigate the challenges posed by them. Understanding the causal relationships among the variables involved and their effect on other sectors like energy, the economy, and water supply will aid in the planning and implementation of appropriate strategies to prevent a further deterioration in the situation. This study explores the causality relationships between water resources, energy productivity, and air pollution in Iran from 1971 to 2014 using the Markov switching vector autoregressive models based on two scenarios. In the first, a Granger-causality analysis has been carried out to examine the indirect unidirectional relationship between energy productivity and water resources at different time scale. In a second it then investigated the direct unidirectional Granger causality relationship between energy productivity, water resources and air pollution. Furthermore, presence of an indirect Granger causality is surveyed for air pollution and water resources. Results also revealed a few practical recommendations to mitigate the harmful effects of pollution.
DOI: 10.6084/m9.figshare.23623008.v2
title: Data for "Why are graminoid species more dominant? Trait-mediated plant-soil feedbacks shape community composition"

description: This dataset includes the plant biomass data, plant-soil feedback data, plant trait data, and simulation model code (includes parameters). We want to clarify that the simulation model code used in our study is not novel (developed by Dudenhöffer et al. 2022) and has been duly cited in the main text. We only modified some parameters, which we have made explicit in the main text.
DOI: 10.6084/m9.figshare.26050390.v2
title: Data and code supporting publication in Ecology: Shifts in avian migration phenologies do not compensate for changes to conditions en route in spring and fall

description: This data and code support the publication by Adams et al. in the journal <i>Ecology</i> in 2025. The article is titled "Shifts in avian migration phenologies do not compensate for changes to conditions en route in spring and fall."Please see Read_me.txt for a descriptions of the data and code.
DOI: 10.6084/m9.figshare.902215.v1
title: Subjective effects of salvia divinorum vs. LSD: Trip reports

description: Subjective effects of salvia divinorum vs. LSD: Analysis of Trip reports
DOI: 10.17632/b85kvbm8ht
title: Stochastic tsunami source database along Chile subduction zone

description: The database contains stochastic tsunami scenarios and tsunami inundation maps generated in the paper "A New Generation of Tsunami Inundation Maps for Chilean Cities: Tsunami Source Database and Probabilistic Hazard Analysis." 
To analyze the Chile-Perú subduction zone, it was divided into four seismic segments based on historical seismicity. Stochastic rupture scenarios were generated across a wide range of magnitudes, ranging from 8.0 to 9.6, using the Karhunen-Loeve expansion. Subsequently, the Stochastic Reduced Order Model (SROM) was applied to select representative tsunami scenarios for each seismic segment and magnitude range. 
The database offers the following data: 
1) Files containing fault parameters to be used in the NEOWAVE model, which also includes probabilities associated to each scenario obtained through the SROM method. These probabilities are needed to generate probabilistic tsunami inundation maps using a weighted density function. 
2) Probabilistic tsunami inundation maps of 11 cities corresponding to an exceedance probability of 2% in 50 years, i.e. 2475 years return period.
3) Probabilistic tsunami inundation maps of 11 cities corresponding to an exceedance probability of 0.5% in 50 years, i.e. 9975 years return period.
4) Figures displaying the coseismic deformation of each scenario.
DOI: 10.6084/m9.figshare.28801487.v1
title: Supplemental material and source data

description: Supplemental material and source data
DOI: 10.17632/v3s8hmht67
title: Exploring Factors Associated with Poor Glycemic Control among Patients with Type 2 ‎Diabetes

description: This data was collected to explore the variables associated with poor glycemic control in patients with Type 2 ‎Diabetes Mellitus
DOI: 10.17632/z8x2hnpmhy
title: Data of: "Estimating the mode I through-thickness intralaminar R-curve of unidirectional carbon fibre-reinforced polymers using a micromechanics framework combined with the size effect method"

description: A three-dimensional micromechanics framework is developed to estimate the mode I through-thickness intralaminar crack resistance curve of unidirectional carbon fibre-reinforced polymers. Finite element models of geometrically-scaled single edge notch tension specimens were generated. These were modelled following a combined micro-/meso-scale approach, where the region at the vicinity of the crack tip describes the microstructure of the material, while the regions far from the crack tip represent the mesoscopic linear-elastic behaviour of the composite. This work presents a novel methodology to estimate fracture properties of composite materials by combining computational micromechanics with the size effect method. The size effect law of the material, and consequently the crack resistance curve, are estimated through the numerically calculated peak stresses. In-depth parametric analyses, which are hard to conduct empirically, are undertaken, allowing for quantitative and qualitative comparisons to be successfully made with experimental and numerical observations taken from literature.
DOI: 10.6084/m9.figshare.3485267.v1
title: Tests on Thin Reinforced Concrete Walls Subjected to In-plane and Out-of-plane Cyclic Loading - TW4 (2/4)

description: The present dataset describes an experimental campaign on five thin T-shaped reinforced concrete walls. The tests aimed at assessing the influence of wall thickness on member stability, the role of lap splices on damage distribution and displacement ductility, and the effects of the simultaneous application of out-of-plane loading on the member response.Further data can be downloaded from the links below.<br> If you use the data, please cite: Almeida, J. P., O. Prodan, A. Rosso, and K. Beyer. 2016. Tests on Thin Reinforced Concrete Walls Subjected to in-Plane and out-of-Plane Cyclic Loading. <i>Earthquake Spectra</i>.
DOI: 10.6084/m9.figshare.5121097.v1
title: Supplementary Material for: Macrophage Response to Apoptotic Cells Varies with the Apoptotic Trigger and Is Not Altered by a Deficiency in LRP Expression

description: Rapid engulfment of apoptotic cells in the absence of inflammation is required for maintenance of normal tissue homeostasis. The low-density lipoprotein receptor-related protein-1 (LRP/CD91) is a receptor mediating interactions between macrophages and apoptotic cells, but recent reports have challenged the requirement of this surface protein in this process. To explore the role of LRP in the recognition of apoptotic cells, target cells were generated with two distinct inducers of apoptotic cell death, etoposide and actinomycin-D. Jurkat T cells rendered apoptotic with etoposide exposed phosphatidylserine (PtdSer) and triggered engulfment by murine bone marrow-derived macrophages (BMDM), however they failed to suppress lipopolysaccharide-driven inflammatory cytokine secretion or, correspondingly, NFĸB-dependent or TNFα promoter-driven transcriptional activity in transfected RAW264.7 macrophages. In contrast, induction of apoptosis in either Jurkat cells or HeLa epithelial cells with actinomycin-D resulted in diminution of proinflammatory signaling from RAW264.7 cells and BMDM. Treatment of actinomycin-treated Jurkat cells with Q-VD-OPh, an irreversible inhibitor of caspase activity, blocked apoptosis, as assessed by the inhibition of PtdSer exposure; however, the cells maintained anti-inflammatory activity. Anti-inflammatory signaling mediated by actinomycin-treated cells was not affected by a macrophage-specific deletion in LRP. Moreover, the presence of LRP on macrophages did not alter the efficiency of engulfment of apoptotic cells in vitro or in vivo. These data demonstrate that the method of induction of apoptosis of target cells influences subsequent macrophage responsiveness, and that LRP is not required for engulfment of apoptotic cells regardless of the method of induction.
DOI: 10.17632/b83g8rzwyz
title: Commodity Prices and the US Dollar

description: The attached zip file contains the data and code to replicate the paper "Commodity prices and the US Dollar".
DOI: 10.17632/mc35j5zyrf
title: Dataset - Gendered Attitudes

description: Data used to investigate the role of sexism as a determinant of the vote in the 2016 US presidential election. The file includes data for proxies of sexists atitudes towards women, elaborated with Google query data and survey-based data, and data for other variables that are known to determine vote, such as home state, unemployment rates and demographic variables, all at media market level.
DOI: 10.6084/m9.figshare.22178423.v3
title: Statistical analysis

description: Results of statistical analysis
DOI: 10.6084/m9.figshare.26068237.v1
title: Macrobrachium rosenbergii genome assembly and gene annotation

description: The giant river prawn (<i>Macrobrachium rosenbergii</i>), belonging to the order Decapoda, is one of the most widely cultured crustacean species. In recent years, the aquaculture of <i>M. rosenbergii</i> has faced challenges, including the degradation of germplasm resources and the emergence of viral diseases. The genomic information can serve as a valuable resource for developing molecular breeding programs for this important aquaculture species. Here we constructed a high-quality reference genome for <i>M. rosenbergii</i> by integrating Nanopore, Illumina, and high-throughput chromosome conformation capture (Hi-C) technologies. The final genome assembly is 3.18 Gb in size, with scaffold N50 and contig N50 of 62.73 Mb and 8.92 Mb, respectively. Approximately 98.6% of the assembled sequences were anchored into 59 pseudo-chromosomes. Benchmarking Universal Single-Copy Orthologs (BUSCO) benchmark of the genome assembly reached 94.5%. Repetitive sequences comprise 43.77% of the assembled genome, and 17,436 protein-coding genes were annotated. The high-quality genome of<i> M. rosenbergii</i> will empower molecular breeding efforts and provide invaluable resources for comparative genomic analysis of decapod species.
DOI: 10.6084/m9.figshare.7269524.v1
title: The album/artist/genre listening history of the sampled users

description: This dataset shows the album/artist/genre listening history of the sampled users, which is extracted from LFM-1b dataset. The number of users across countries is very unbalanced and to avoid unreliable results, we only retained countries with more than 1% of the total users in LFM-1b. This filtering resulted in 20 countries with 46,619 users and 678,640,512 listening events that cover 11,165,177 unique albums, 2,259,103 unique artists and 20 unique genres. The genre labels are artist-based and correspond to those in Allmusic, a major online music repository.
DOI: 10.17632/ywrmpn7b4z
title: Neural-circuit basis of song preference learning in fruit flies

description: The dataset and code used for the publication of "Neural-circuit basis of song preference learning in fruit flies"
 (doi: 10.1016/j.isci.2024.110266).
DOI: 10.6073/pasta/f9462ef45391dfa873e43383a179022d
title: SGS-LTER Standard Production Data: 1983-2008 Annual Aboveground Net Primary Production on the Central Plains Experimental Range, Nunn, Colorado, USA 1983-2008, ARS Study Number 6
DOI: 10.6084/m9.figshare.104579.v1
title: Colx194E9, F1 #5, plant 54 raw data, T6H20 indel marker.

description: T6H20 indel marker initial data analysis of qPCR results.
DOI: 10.6084/m9.figshare.27874164.v3
title: Air-dried soils for microbial biogeography

description: The potential of archived air-dried soil samples to enhance our understanding of long-term microbial community dynamics remains largely untapped due to concerns about their reliability for molecular analyses. While previous studies have investigated air-drying effects on soil microbial analysis, few have examined these effects across diverse environmental gradients, limiting our understanding of archived soil samples in microbial biogeography at large spatial scales. Through a comprehensive regional survey of 244 arable sites in eastern China, we evaluated the impact of air-drying on microbial biogeographical analysis. Our results demonstrate that while air-drying significantly altered community composition and diversity metrics, it preserved broad ecological patterns and environmental relationships. Air-dried samples maintained similar community dissimilarity patterns and environmental drivers as fresh samples, despite showing reduced diversity and shifted taxonomic compositions. Co-occurrence network analysis revealed altered correlation patterns, likely due to differential responses to desiccation stress. These findings establish a framework for leveraging air-dried samples in microbial ecology, particularly for large-scale studies focused on microbial biogeography and environmental relationships, while providing practical guidelines for results interpretation.
DOI: 10.6084/m9.figshare.28551239.v1
title: <b>Biophysical impacts of urbanization on climate change and vegetation in Borneo island</b>

description: Urbanization causes compounding adverse impacts with climate change on regional ecology and society through biogeophysical processes. Borneo Island of Indonesia has been undergoing rapid urbanization under climate change, but the compounding impact of urbanization remains unknown. Here, we investigate how idealized urbanization affects regional climate and vegetation using Community Earth System Model version 2 (CESM2) simulations with two land cover scenarios for Borneo: 1) a control scenario and 2) an urbanization scenario for the 2025–2034 period. Results show that urbanization in Borneo alters surface biophysical properties, imbalancing the regional surface water budget and thus leading to a warmer (+0.25°C) and drier (−0.17 mm/day) climate across the island, with particularly pronounced effects on the dry period climate. Furthermore, these urbanization-induced climate responses contribute to additional vegetation loss. Moreover, vegetation in Kalimantan, the site of Indonesia’s new capital, is particularly sensitive to the combined impact of urbanization with climate changes. This study highlights the importance of considering biophysical climate effects when assessing the compounding impact of urbanization, which guides policy makers in updating current climate adaptation plans for sustainable urban development.
DOI: 10.6084/m9.figshare.29117501.v1
title: Integrated Bioprinting of Trachea-Like Structures Based on Tissue-Specific bioink

description: Integrated Bioprinting of Trachea-Like Structures Based on Tissue-Specific bioink
DOI: 10.6084/m9.figshare.1287230.v1
title: Code - Historical autocorrelations in stock prices

description: Code of Historical autocorrelations in stock prices.<br>Christian Bartels.<br>figshare. http://dx.doi.org/10.6084/m9.figshare.1287224
DOI: 10.6084/m9.figshare.15302229.v8
title: The genome of an apodid holothuroid (Chiridota heheva) provides insights into its adaptation to a deep-sea reducing environment

description: An apodid holothuroid (Chiridota heheva) collected from the Haima cold seep in the South China Sea (16° 73.228’ N, 110° 46.143’ E, 1,385 m deep). A high-quality draft genome of the species was generated, and the genome was annotated with a combination of ab initio and homolog-based prediction methods. Comparative genomic analyses of C. heheva and other echinoderms revealed genetic basis of deep-sea adaptation in this species.