cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48597/vmtb-afrg
title: Measurement of Dibenzothiophene at Alert

description: Measurement of Dibenzothiophene at Alert
DOI: 10.34740/kaggle/dsv/3319329
title: Data Science on Reddit
DOI: 10.6084/m9.figshare.19388126
title: Cleaningdata

description: Cleaning results using bbmap for RNA-seq data BioProject ID:PRJNA817875
DOI: 10.6084/m9.figshare.19388126.v1
title: Cleaningdata

description: Cleaning results using bbmap for RNA-seq data BioProject ID:PRJNA817875
DOI: 10.6084/m9.figshare.19322486
title: Breast Cancer Coimbra Data Set

description: Adaptation of http://archive.ics.uci.edu/ml/datasets/Breast+Cancer+Coimbra<br>Ready for usage with ehrapy
DOI: 10.6084/m9.figshare.19322516
title: Parkinsons Data Set

description: Adaptation of http://archive.ics.uci.edu/ml/datasets/Parkinsons<br>Ready for usage with ehrapy<br>
DOI: 10.6084/m9.figshare.19388213
title: TMA and clinical data from KIM-1 RCC dataset

description: TMA and clinical data from KIM-1 RCC dataset
DOI: 10.6084/m9.figshare.19322537
title: Parkinsons Telemonitoring Data Set

description: Adaptation of http://archive.ics.uci.edu/ml/datasets/Parkinsons+Telemonitoring<br>Ready for usage with ehrapy
DOI: 10.6084/m9.figshare.19322540
title: Parkinson's Disease Classification Data Set

description: Adaptation of http://archive.ics.uci.edu/ml/datasets/Parkinson's+Disease+Classification<br>Ready for usage with ehrapy
DOI: 10.6084/m9.figshare.19322543
title: Parkinson Dataset with replicated acoustic features Data Set

description: Adaptation of http://archive.ics.uci.edu/ml/datasets/Parkinson+Dataset+with+replicated+acoustic+features+<br>Ready for usage with ehrapy
DOI: 10.6084/m9.figshare.19388234
title: Tumor masses clinical data and KIM-1 plasma levels

description: Clinical and plasma KIM-1 data from WURZ and DF/HCC patient cohorts as well as controls
DOI: 10.34740/kaggle/dsv/3329070
title: Data Science on Reddit
DOI: 10.34740/kaggle/dsv/3329080
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.6084/m9.figshare.19367933.v3
title: Visual Near-Duplicates Detection in the Context of Social Media (Dataset)

description: The dataset of the paper: ``Dataset and Case Studies for Visual Near-Duplicates Detection in the Context of Social Media'', by Hana Matatov, Mor Naaman, and Ofra Amir.<br>See the Github repository for details:https://github.com/sTechLab/Visual-Near-Duplicates-Detection-in-the-Context-of-Social-Media<br><br>See the associated paper on arXiv:https://arxiv.org/abs/2203.07167<br>
DOI: 10.34740/kaggle/dsv/3329104
title: 2021 World Population (updated daily)
DOI: 10.6084/m9.figshare.19388249
title: Herg DATA

description: A herg blocker/non-blocker dataset
DOI: 10.6084/m9.figshare.19388249.v1
title: Untitled Item

description: A herg blocker/non-blocker dataset
DOI: 10.25345/c5g15tf2t
title: MassIVE MSV000089085 - GNPS Acanthostrongylophora ingens 20.3.22
title: GNPS for Acanthostrongylophora ingens analysis 20.3.22
DOI: 10.6084/m9.figshare.17808266
title: 2019KP.xls

description: The drug susceptibility data of <i>K. pneumoniae</i> from six tertiary hospitals in Shaoxing city in 2019
DOI: 10.6084/m9.figshare.17808266.v1
title: 2019KP.xls

description: The drug susceptibility data of <i>K. pneumoniae</i> from six tertiary hospitals in Shaoxing city in 2019
DOI: 10.5281/zenodo.6369837
title: Recurrence and metastasis detection of breast cancer

description: This dataset includes 88 H&E stained whole slide images (WSI) of breast cancer downloaded from TCGA (https://portal.gdc.cancer.gov/repository/) with the type of Formalin-Fixed Paraffin-Embedded (FFPE), of which 5 cases have recurrence or metastasis.
DOI: 10.5281/zenodo.6369836
title: Recurrence and metastasis detection of breast cancer

description: This dataset includes 88 H&E stained whole slide images (WSI) of breast cancer downloaded from TCGA (https://portal.gdc.cancer.gov/repository/) with the type of Formalin-Fixed Paraffin-Embedded (FFPE), of which 5 cases have recurrence or metastasis.
DOI: 10.34740/kaggle/dsv/3329287
title: COVID Vaccination in World (updated daily)
DOI: 10.3886/e165302v1
title: Data and Code for: Unintended Consequences of Lockdowns: COVID-19 and the Shadow Pandemic

description: This is the code and data repository for the article "Unintended Consequences of Lockdowns: COVID-19 and the Shadow Pandemic." Abstract: Violence against women is a problem worldwide, with economic costs ranging from 1-4% of global GDP. Using variation in the intensity of government-mandated lockdowns in India, we show that domestic violence complaints increase 0.48 SD in districts with the strictest lockdown rules. We find similarly large increases in cybercrime complaints. However, rape and sexual assault complaints decrease 0.4 SD in districts with the strictest lockdowns, consistent with decreased female mobility in public spaces, public transport, and workplaces. Longer-term analysis shows that increases in domestic violence complaints persist one year later, while other complaints related to rape, sexual assault, and cybercrimes return to pre-lockdown levels.
DOI: 10.21227/7gm7-sm54
title: Recomendation System Acceptance

description: This dataset contains survey results collected from new recommendation system. This dataset asks about how the people accept recommendation systems from the AI trustworthiness and recommendation quality aspect.
DOI: 10.6084/m9.figshare.19388261
title: data1.xlsx

description: <b>Table </b> Standard processing schedule<b>Table .</b> The optimal solutions obtained by different algorithms<br>
DOI: 10.6084/m9.figshare.19388261.v1
title: data1.xlsx

description: <b>Table </b> Standard processing schedule<b>Table .</b> The optimal solutions obtained by different algorithms<br>
DOI: 10.5281/zenodo.6371243
title: Data for peer review of an article (JGR solid earth) in March, 2022

description: This is a zip file containing all the data used to generate figures and tables of the manuscript of a paper being submitted. Please see _README.txt at first. Note: this data file is for a peer review only.
DOI: 10.5281/zenodo.5918495
title: Data for peer review of an article (JGR solid earth) in March, 2022

description: This is a zip file containing all the data used to generate figures and tables of the manuscript of a paper being submitted. Please see _README.txt at first. Note: this data file is for a peer review only.
DOI: 10.6084/m9.figshare.16622943.v1
title: Transient luminescence spectroscopy of dialkylRu(bpy)<sub>3</sub><sup>2+</sup>-citratoperoxotitanate-dialykylviologen triad LB film deposited on quartz slab waveguide

description: Amphiphilic Ru(bpy)<sub>3</sub><sup>2+</sup> complex (DC<sub>17</sub>Ru)—citratoperoxotitanate (CPT) —ditetradecylviologen (DC<sub>14</sub>V) triad nano-film was fabricated on quartz slab optical waveguide by organic-inorganic hybrid Langmuir-Blodgett method. Transient phosphorescence of the DC<sub>17</sub>Ru monolayer at 610 nm excited by 532 nm pulsed laser was observed by SOWG spectroscopy. The phosphorescence was partly quenched by the CPT layer and the quenching was enhanced by the DC<sub>14</sub>V monolayer underneath the CPT layer in the DC<sub>17</sub>Ru-CPT nano-film. Energy levels of the components, DC<sub>17</sub>Ru, CPT and DC<sub>14</sub>V suggests an exergonic cascade electron transfer mechanism from the excited state of DC<sub>17</sub>Ru to DC<sub>14</sub>V via the CPT.
DOI: 10.5281/zenodo.6371249
title: TestDataset for Oneat networks for detection and prediction of dividing Hela cells for different imaging modalities

description: Here we present the tif files to be used to test the Oneat networks for detection and prediction of division events for Hela cells imaged under different imaging modalities and presented originally here: https://zenodo.org/record/6139958#.Yjcjl3rMJD8
description: Computational support provided by Jean Zay dynamic access grant: AD011013396
DOI: 10.5281/zenodo.6371248
title: TestDataset for Oneat networks for detection and prediction of dividing Hela cells for different imaging modalities

description: Here we present the tif files to be used to test the Oneat networks for detection and prediction of division events for Hela cells imaged under different imaging modalities and presented originally here: https://zenodo.org/record/6139958#.Yjcjl3rMJD8
description: Computational support provided by Jean Zay dynamic access grant: AD011013396
DOI: 10.6084/m9.figshare.19388270
title: Transcriptome analysis of apple (Malus domestica Borkh.) in response to low temperature stress

description: Freezing injury in winter is an important abiotic stress, which seriously affects the growth and development of plants. Deciduous fruit trees resist freezing injury by dormancy. However, different varieties in the same species have different cold resistance strategies. Little is known about the molecular mechanism of apple trees in response to freezing injury during winter dormancy. Therefore, the annual branches of the freezing resistant cultivar Hanfu (HF) and the freezing sensitive cultivar Naganofuji No. 2 (CF) during the dormant season were used to study the cold resistance of apples at transcriptional levels.
DOI: 10.6084/m9.figshare.19388270.v1
title: Transcriptome analysis of apple (Malus domestica Borkh.) in response to low temperature stress

description: Freezing injury in winter is an important abiotic stress, which seriously affects the growth and development of plants. Deciduous fruit trees resist freezing injury by dormancy. However, different varieties in the same species have different cold resistance strategies. Little is known about the molecular mechanism of apple trees in response to freezing injury during winter dormancy. Therefore, the annual branches of the freezing resistant cultivar Hanfu (HF) and the freezing sensitive cultivar Naganofuji No. 2 (CF) during the dormant season were used to study the cold resistance of apples at transcriptional levels.
DOI: 10.5281/zenodo.6371281
title: Head movement and heartbeat data while playing VR games

description: This dataset was collected while 30 different participants played five different VR games (Aircar, Beat Saber, Moss, Arizona Sunshine, and SUPERHOT). It includes the head movement data, heartbeat data, and SSQ data.
DOI: 10.5281/zenodo.6362509
title: Head movement and heartbeat data while playing VR games

description: This dataset was collected while 30 different participants played five different VR games (Aircar, Beat Saber, Moss, Arizona Sunshine, and SUPERHOT). It includes the head movement data, heartbeat data, and SSQ data.
DOI: 10.34740/kaggle/ds/1321101
title: Difficulty prediction for COCO and VG
DOI: 10.5281/zenodo.6371286
title: A meta-analysis of the characterisations of plastic ingested by fish globally

description: Plastic contamination in the environment is common but the characterisation of plastic ingested by fishes in different environment is lacking. Hence, a meta-analysis was conducted to identify the prevalence of plastic ingested by fish globally. Based on the qualitative analysis of plastic size, small microplastic (&lt;1 mm) was predominantly ingested by fish globally. Besides, our meta-analysis revealed that plastic fibres (70.6%) and fragments (19.3%) were the most prevalent plastic components ingested by fish, while blue (24.2%) and black (18.0%) coloured plastic were the most abundant. Polyethylene (15.7%) and polyester (11.6%) were the most abundant polymers. Mixed-effect models were employed to identify the effects of the moderators (sampling environment, plastic size, digestive organs examined, and sampling continents) on the prevalence of plastic shape, colour, and polymer type. Among the moderators, only the sampling environment and continent contributed to a significant difference between subgroups in plastic shape and polymer type. The result suggested that most of the fish species ingested plastic unintentionally due to its prevalence in the environment.
DOI: 10.5281/zenodo.6371285
title: A meta-analysis of the characterisations of plastic ingested by fish globally

description: Plastic contamination in the environment is common but the characterisation of plastic ingested by fishes in different environment is lacking. Hence, a meta-analysis was conducted to identify the prevalence of plastic ingested by fish globally. Based on the qualitative analysis of plastic size, small microplastic (&lt;1 mm) was predominantly ingested by fish globally. Besides, our meta-analysis revealed that plastic fibres (70.6%) and fragments (19.3%) were the most prevalent plastic components ingested by fish, while blue (24.2%) and black (18.0%) coloured plastic were the most abundant. Polyethylene (15.7%) and polyester (11.6%) were the most abundant polymers. Mixed-effect models were employed to identify the effects of the moderators (sampling environment, plastic size, digestive organs examined, and sampling continents) on the prevalence of plastic shape, colour, and polymer type. Among the moderators, only the sampling environment and continent contributed to a significant difference between subgroups in plastic shape and polymer type. The result suggested that most of the fish species ingested plastic unintentionally due to its prevalence in the environment.
DOI: 10.5281/zenodo.5018779
title: Modeling robust COVID-19 intensive care unit occupancy thresholds for imposing mitigation to prevent exceeding capacities

description: Simulation output files for 'Modeling robust COVID-19 intensive care unit occupancy thresholds for imposing mitigation to prevent exceeding capacities'. Simulating COVID-19 transmission and hospital burden to assess at which intensive care unit (ICU) occupancies mitigation, that reduces transmission, needs to be triggered to avoid exceeding ICU capacity limits, using the city of Chicago, Illinois as an example. Manuscript is under review for scientific publication, (see preprint on medRxiv) and scripts are available from the GitHub repository at https://github.com/numalariamodeling/ICUtrigger_covid_chicago_paper_2021. Simulation output files uploaded per scenario including projected COVIID-19 transmission and burden trajectories for Chicago city for March 2020 to May 2021 per day. Simulation scenarios: &lt;reopening % above ICU capacity&gt;_&lt;delay after reaching ICU threshold&gt;_&lt;%mitigation&gt;_&lt;common simulation name&gt; i.e. `50perc_1daysdelay_pr6_triggeredrollback_reopen` `emodl` file required file for COVID-19 transmission model in the Compartmental Modeling Software (see GitHub repository for details) sampled_parameters.csv simulation input and scenario parameters, (nrow=4400, 400 unique parameter combinations * 11 scenario values) rt_trajectoriescovidregion_11.csv estimated reproductive numbers per trajectory for complete timeline per day trajectoriesDat_region_11_traces.csv filtered to include top 100 trajectories fitted to ICU data trajectoriesDat_region_trimfut.csv truncated to only include projections after September 1st 2020 The folder `mainfigures_csvs.zip` includes processed simulation output data for the publication figures.
DOI: 10.5281/zenodo.5018778
title: Modeling robust COVID-19 intensive care unit occupancy thresholds for imposing mitigation to prevent exceeding capacities

description: Simulation output files for 'Modeling robust COVID-19 intensive care unit occupancy thresholds for imposing mitigation to prevent exceeding capacities'. Simulating COVID-19 transmission and hospital burden to assess at which intensive care unit (ICU) occupancies mitigation, that reduces transmission, needs to be triggered to avoid exceeding ICU capacity limits, using the city of Chicago, Illinois as an example. Manuscript is under review for scientific publication, (see preprint on medRxiv) and scripts are available from the GitHub repository at https://github.com/numalariamodeling/ICUtrigger_covid_chicago_paper_2021. Simulation output files uploaded per scenario including projected COVIID-19 transmission and burden trajectories for Chicago city for March 2020 to May 2021 per day. Simulation scenarios: &lt;reopening % above ICU capacity&gt;_&lt;delay after reaching ICU threshold&gt;_&lt;%mitigation&gt;_&lt;common simulation name&gt; i.e. `50perc_1daysdelay_pr6_triggeredrollback_reopen` `emodl` file required file for COVID-19 transmission model in the Compartmental Modeling Software (see GitHub repository for details) sampled_parameters.csv simulation input and scenario parameters, (nrow=4400, 400 unique parameter combinations * 11 scenario values) rt_trajectoriescovidregion_11.csv estimated reproductive numbers per trajectory for complete timeline per day trajectoriesDat_region_11_traces.csv filtered to include top 100 trajectories fitted to ICU data trajectoriesDat_region_trimfut.csv truncated to only include projections after September 1st 2020 The folder `mainfigures_csvs.zip` includes processed simulation output data for the publication figures.
DOI: 10.5281/zenodo.5701550
title: Sub-national tailoring of malaria interventions in Mainland Tanzania: simulation of the impact of strata-specific intervention combinations using modelling

description: Simulation dataset.
DOI: 10.5281/zenodo.5701549
title: Sub-national tailoring of malaria interventions in Mainland Tanzania: simulation of the impact of strata-specific intervention combinations using modelling

description: Simulation dataset.
DOI: 10.5281/zenodo.6350668
title: Dataset: Two-dimensional wavefront characterization of adaptable corrective optics and Kirkpatrick–Baez mirror system using ptychography

description: The ptychography datasets and processed wavefront data in support of the publication "Two-dimensional wavefront characterization of adaptable corrective optics and Kirkpatrick–Baez mirror system using ptychography". File are in the HDF format and contain a number of datasets detailed below. If you require more information, please contact the corresponding author of the publication or thomas.moxham@eng.ox.ac.uk
DOI: 10.5281/zenodo.6350667
title: Dataset: Two-dimensional wavefront characterization of adaptable corrective optics and Kirkpatrick–Baez mirror system using ptychography

description: The ptychography datasets and processed wavefront data in support of the publication "Two-dimensional wavefront characterization of adaptable corrective optics and Kirkpatrick–Baez mirror system using ptychography". File are in the HDF format and contain a number of datasets detailed below. If you require more information, please contact the corresponding author of the publication or thomas.moxham@eng.ox.ac.uk
DOI: 10.5281/zenodo.6371316
title: Genome-wide analysis identified candidate variants and genes associated with heat stress adaptation in Egyptian sheep breeds

description: The current study was conducted from 2009 to 2019 in three hot and dry agroecological zones in Egypt: Western Desert coastal zone, New Valley desert oasis, and hot-dry Upper Egypt. Within these zones, three local sheep breeds were studied: Barki (83 ewes), Wahati (55 ewes) and Saidi (68 ewes). During the study period, the animals exercised under natural heat stress (simulating summer grazing on poor pasture). Meteorological and physiological parameters were measured and recorded. The heat tolerance index of the animals was calculated to identify animals with high and low heat tolerance based on the animals' response to the five main physiological parameters (scale from 0 to 5). DNA samples were extracted for genomic analysis. The genetic diversity measurements showed a significant influence of breed and location on the populations. The influence of breed is more significant than that of location. The inbreeding analysis shows that the desert breeds (Wahati and Barki) have lower values than the urban breed (Saidi). The high rate of sub-clustering indicates the process of sub-population through inbreeding pressure. Wahati and Barki are very distinct breeds with strong identification, while Saidi breed has crosses with other breeds. The most significant SNPs associated with heat tolerance were found in MYO5A, PRKG1, GSTCD, and RTN1 genes (P &lt; 0.0001). MYO5A had an effect of 0.74 on the trait heat tolerance in the studied population. It produces a protein that is widely distributed in the melanin-producing neural crest of the skin. Genetic association between genetic and phenotypic variations showed that OAR1 18300122.1, located in ST3GAL3, had the greatest positive effect on heat tolerance. GWAS analysis identified SNPs associated with heat tolerance in the PLCB1, STEAP3, KSR2, UNC13C , PEBP4, and GPAT2 genes.
DOI: 10.5281/zenodo.6371315
title: Genome-wide analysis identified candidate variants and genes associated with heat stress adaptation in Egyptian sheep breeds

description: The current study was conducted from 2009 to 2019 in three hot and dry agroecological zones in Egypt: Western Desert coastal zone, New Valley desert oasis, and hot-dry Upper Egypt. Within these zones, three local sheep breeds were studied: Barki (83 ewes), Wahati (55 ewes) and Saidi (68 ewes). During the study period, the animals exercised under natural heat stress (simulating summer grazing on poor pasture). Meteorological and physiological parameters were measured and recorded. The heat tolerance index of the animals was calculated to identify animals with high and low heat tolerance based on the animals' response to the five main physiological parameters (scale from 0 to 5). DNA samples were extracted for genomic analysis. The genetic diversity measurements showed a significant influence of breed and location on the populations. The influence of breed is more significant than that of location. The inbreeding analysis shows that the desert breeds (Wahati and Barki) have lower values than the urban breed (Saidi). The high rate of sub-clustering indicates the process of sub-population through inbreeding pressure. Wahati and Barki are very distinct breeds with strong identification, while Saidi breed has crosses with other breeds. The most significant SNPs associated with heat tolerance were found in MYO5A, PRKG1, GSTCD, and RTN1 genes (P &lt; 0.0001). MYO5A had an effect of 0.74 on the trait heat tolerance in the studied population. It produces a protein that is widely distributed in the melanin-producing neural crest of the skin. Genetic association between genetic and phenotypic variations showed that OAR1 18300122.1, located in ST3GAL3, had the greatest positive effect on heat tolerance. GWAS analysis identified SNPs associated with heat tolerance in the PLCB1, STEAP3, KSR2, UNC13C , PEBP4, and GPAT2 genes.
DOI: 10.15156/bio/sh1588439.08fu
title: SH1588439.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.