cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.p4jers
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Material sample"
 ]
 },
 {
 "or" : [
 "Country is United States of America",
 "Country is Mexico",
 "Country is Guatemala",
 "Country is Belize",
 "Country is El Salvador",
 "Country is Honduras",
 "Country is Nicaragua",
 "Country is Costa Rica",
 "Country is Panama"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hyparrhenia bracteata (Humb. & Bonpl. ex Willd.) Stapf"
 ]
}

 The dataset includes 31 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034688-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ioxffb
title: Occurrence Download

description: A dataset containing 53524 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Observation.org, Nature data from around the World",
 "HasCoordinate is true",
 "TaxonKey is Alauda arvensis Linnaeus, 1758",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 53524 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008433-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83h94f
title: Occurrence Download

description: A dataset containing 6906 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abrus precatorius L."
 ]
}

 The dataset includes 6906 records from 274 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006113-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r5p78s
title: Occurrence Download

description: A dataset containing 118 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anthospermum welwitschii Hiern"
 ]
}

 The dataset includes 118 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007755-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxmagm
title: Occurrence Download

description: A dataset containing 188 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anguis colchica (Nordmann, 1840)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 188 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009882-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b3v6ck
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dichanthelium hirstii (Swallen) Kartesz"
 ]
}

 The dataset includes 40 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157314-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hc4z85
title: Occurrence Download

description: A dataset containing 2823 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pitohui dichrous (Bonaparte, 1850)"
 ]
}

 The dataset includes 2823 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067043-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.11gpft
title: Occurrence Download

description: A dataset containing 1433 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Appendix Table 1) Relative abundances of calcareous nannofossil in the total assemblage of ODP Hole 177-1090D"
 ]
}

 The dataset includes 1433 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009882-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j6zs73
title: Occurrence Download

description: A dataset containing 13319 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((108 21,110 21,110 24,108 24,108 21))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 13319 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067048-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v93s2s
title: Occurrence Download

description: A dataset containing 1171 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Literature Occurrence"
 ]
 },
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hypochaeris radicata L."
 ]
}

 The dataset includes 1171 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251815-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q1n2ef
title: Occurrence Download

description: A dataset containing 149411011 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 149411011 records from 2007 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009882-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/wg49gt
title: Development and validation of a multi-trophic metabarcoding biotic index for benthic organic enrichment biomonitoring using a salmon farm case-study.

description: Salmon farms are often associated with strong benthic enrichment gradients. Routine monitoring is usually required by regulation, and has traditionally been based on benthic macrofaunal communities. This is reliant on taxonomic expertise, excludes analsyis of micro-organisms and turn-around times can be slow, limiting opportunities for adaptive management. Environmental metabarcoding is a powerful high-throughput sequencing-based technique that is promising for identifying and quantifying assemblages of benthic organisms for biomonitoring. Previous studies have demonstrated relationships between specific taxonomic groups (e.g., bacteria, foraminifera or other eukaryotes) and anthropogenic effects. However, there is uncertainty around applicability at larger spatial and temporal scales, and the absence of fixed categorical scales makes the use of data challenging for routine biomonitoring. In this study, we analysed 105 sediment samples collected over three years from three salmon farms spanning two separate bioregions. Environmental DNA and RNA (eDNA/eRNA) metabarcoding of three taxonomic groups (foraminifera [For], bacteria [Bac], and general eukaryotes [Euk]) was undertaken in parallel with traditional macrofaunal and biochemical analysis (which were used to calculate an Enrichment Stage [ES] index for each sample). The most abundant 200 to 250 Operational Taxonomic Units in each taxonomic group were assigned to Eco-Groups (EG) using a quantitative, quality-based method. These were then used to develop a Metabarcoding Biotic Index (MBI) for each group individually (For-MBI, Bac-MBI, and Euk-MBI) and in combination (multi-trophic MBI; mt-MBI). Based on our assessment criteria we robustly allocated ca. 500 EG to a wide range of known and unknown taxa. Using both the development (year 1 [Y1] and 2 [Y2]) and independent validation (year 3) datasets the weakest correlation was between For-MBI and ES (eDNA/RNA, R2 = 0.731 to 0.850), whereas strong correlations were obtained between the mt-MBI and, or when just Bac and Euk data (mt[Bac+Euk]-MBI) were combined (eDNA/RNA, R2 &gt; 0.900). Consequently, we suggest that foraminifera be excluded from the mt-MBI, which will reduce analytical time and costs. The strong correlations obtained between the mt-MBI and ES confirms that it has the potential to complement or even replace current fish farm biomonitoring techniques in the near future.
DOI: 10.15468/dl.c8ghqy
title: Occurrence Download

description: A dataset containing 84708 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Acila, Deminucula, Ennucula, Leionucula, Linucula, Menneroctenia, Nucula, Nuculoma, Nucula, Trinacria, Varinucula)"
 ]
}

 The dataset includes 84708 records from 301 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011734-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/tofq5p
title: Seawater Targeted Locus (Loci)

description: We applied culture-independent, high throughput pyrosequencing to characterize the microbial communities associated with coastal seawater adjacent to populated Broward County, FL. These waters flow over adjacent coral reefs, which help compose the Florida reef tract, and also close to recreational beaches. In partnership with the NOAA FACE program to survey water quality, 38 total nearshore seawater samples were collected and characterized for bacterial populations from 6 distinct coastal locales - the Port Everglades and Hillsboro Inlets, Hollywood and Broward wastewater outfalls, and associated reef waters over the course of one year. More than 227,000 quality checked 16S rRNA V4 amplicon sequences were generated for longitudinal taxonomic profiles of marine bacteria and archaea. From these sequences, 4447 unique OTUs were found and there was a mean OTU count of 5986.816 across all site. Sequences were found to vary significantly due to seasonal effects and by site, but depth showed no significant correlation. Abundant microbial taxa across all samples included Synechococcus, Pelagibacteraceae, Bacteroidetes, and various Proteobacteria. Inlet-based communities significantly differed from outfall and reef communities, with a relative increase in Rhodobacteraceae and Cryomorphaceae, and depletion of SAR406 sequences. Unifrac analysis confirmed significant differences in the inlet populations relative to reef and outfall microbial communities. However, based on alpha diversity measurements, the outfalls sites showed the most diversity with the occurrence of Thiotrichales, Alteromonadales, and the archaean Thermoplasmata. This study also found increased levels of Firmicutes, Chloroflexi, and sludge associated bacterial OTUs such as SBR1093 at the outfall and reef sites.
DOI: 10.15468/fe4eoj
title: Santa Barbara Channel cruise SBDOM11 bacterioplankton 16S rDNA

description: This sample includes environmental bacterioplankton DNA from the SBDOM11 cruise in the Santa Barbara Channel, California, USA, in May 2011, as well as associated experimental samples from remineralization bioassays. This project traced the bacterial response to the DOM produced by an upwelling-driven phytoplankton bloom, from recently upwelled water through the onset of nutrient stress.
DOI: 10.15468/gwdbtl
title: Arabian sea sediment samples with protist reads Metagenome

description: Protist paleome from Arabian sea
DOI: 10.15468/hkl2cy
title: mangrove rhizosphere sediment Metagenome Raw sequence reads

description: To provide the comprehensive diversity and structure of diazotrophic and bacterial communities in the rhizospheres of mangroves
DOI: 10.15468/d4fpap
title: Tyne oil spill snorkels Raw sequence reads

description: Bioelectrochemical bioremediation to accelerate hydrocarbon biodegradation in anoxic marine sediments, using "oil-spill snorkels". The snorkels (rods of conductive material) were positioned to create an electrochemical connection between the anoxic contaminated sediment and the oxic overlying water. In principle, the snorkel could take advantage of the capability of electro-active bacteria to anaerobically oxidize hydrocarbons with the snorkel serving as a respiratory electron acceptor.Fifty 16S rRNA amplicon libraries were generated representing microbial communities from the snorkel, no oil snorkel, control, no oil control and abiotic experiments at 175, 286 and 466 days during the incubation period, as well as from the initial sediments with and without oil (Time 0).
DOI: 10.15468/xf693e
title: Biodiversity Exploratories Rhizosphere 2015

description: Biodiversity Exploratories Rhizosphere 2015
DOI: 10.15468/dl.csq46d
title: Occurrence Download

description: A dataset containing 581833 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hyalyris coeno, Catopsilia, Nymphalis l-album, Chilades laius, Polyommatus semiargus, Lachnoptera ayresii, Junonia villida, Nymphalis vaualbum, Hypolimnas salmacis, Belenois gidica, Arhopala araxes, Pteronymia asopo, Sevenia occidentalium, Dynastor darius, Dircenna jemina, Delias sanaca, Appias sylvia, Episcada sylpha, Elodina claudia, Appias leis, Papilio ulysses, Theclinesthes onycha, Memphis philumena, Celatoxia, Acraea encedon, Eutresis hypereia, Euptychia jesia, Eunica maia, Catopsilia florella, Aglais caschmirensis, Mycalesis subdita, Kallima horsfieldii, Libythea collenettei, Tagiades distans, Memphis, Hasora discolor, Appias melania, Libythea laius, Calisto, Colias sareptensis, Pareronia valeria, Kallima philarchus, Nacaduba calauria, Eurema gratiosa, Papilio agestor, Salamis cacta, Hasora, Euploea eunice, Historis acheronta, Olyras crathis, Phalanta eurytis, Euploea eyndhovii, Kricogonia lyside, Belenois subeida, Eunica modesta, Parantica swinhoei, Eunica ingens, Dircenna dero, Polyommatus coridon, Euchloe lucilla, Belenois zochalia, Tmolus, Mycalesis oculus, Cupido argiades, Marpesia coresia, Heliconius pachinus, Libytheana motya, Protesilaus protesilaus, Lobocla bifasciatus, Agraulis vanillae, Acraea eponina, Lycaenidae, Hylephila phylaeus, Sevenia, Ypthima bolanica, Appias sabina, Pteronymia veia, Euphydryas editha, Papilio paeon, Phyciodes mylitta, Jamides nemophila, Hamadryas amphichloe, Lethe sidonis, Catopsilia boisduvalii, Pentila occidentalium, Mechanitis nessaea, Colotis etrida, Marpesia furcula, Pseudochazara thelephassa, Telicota eurychlora, Lycorea, Delias, Brephidium exilis, Athyma opalina, Eunica viola, Appias wardii, Hypolimnas anomala, Libythea geoffroyi, Eueides vibilia, Argynnis adippe, Chlosyne fulvia)",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2011"
 ]
}

 The dataset includes 581833 records from 835 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011720-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5uzwum
title: Occurrence Download

description: A dataset containing 130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ctenophryne aequatorialis",
 "Year 1968-2025"
 ]
}

 The dataset includes 130 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011752-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qdva5n
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium strictum",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011754-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/jl0q56
title: bacterial community in the deep-sea surface sediments

description: bacterial community in the deep-sea surface sediments of the Eastern Indian Ocean
DOI: 10.15468/dl.bkz2zx
title: Occurrence Download

description: A dataset containing 917 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Aloe striata)"
 ]
}

 The dataset includes 917 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011755-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/9l298u
title: SB Marine Metagenome

description: The study of bacterial diversity. Marine metagenome from Malaysian coastal water.
DOI: 10.15468/dl.82te5t
title: Occurrence Download

description: A dataset containing 99062 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lepidoptera)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2025",
 "Country is China"
 ]
}

 The dataset includes 99062 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011735-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/6hv9td
title: Universal Amplicon Sequences (mixed 16S/18S) from GEOTRACES Cruises GA03 and GP13

description: Dedicated sampling campaigns such as JGOFS, CLIVAR, and GEOTRACES have quantified critical oceanic biogeochemical processes on a global scale. Integrating these measurements with microbial community composition data is highly desirable because it would allow hypotheses about biogeographic distributions to be tested or perhaps lead to the discovery of organisms responsible for a particular biogeochemical process. A promising strategy to generate this microbial community composition data comes from high-throughput sequencing of PCR amplicons generated with the 515Y/926R universal 16S/18S primer set. The two key advantages of the 515Y/926R primers are 1) their comprehensiveness - recovering amplicons from the entire cellular microbial community - and 2) their quantitative nature - recovering gene copy abundances as shown previously with microbial community standards. Compared to metagenomes, amplicons additionally have the advantage of more easily detecting rare community members that may be biogeochemically significant (e.g. diazotrophs). In this study, we applied the 515Y/926R primers to DNA from the recently published bioGEOTRACES metagenomic dataset, and use these results to describe microbial community composition across a longitudinal transect of the southern Pacific Ocean from Australia to Tahiti (GEOTRACES section GP13) and a longitudinal transect of the northern Atlantic from Massachusetts to the Canary Islands (GEOTRACES section GA03). In addition, we conducted intercomparisons with metagenomic taxa abundances and show the two techniques correspond strongly to one another for most samples (average R^2=0.97).
DOI: 10.15468/shrame
title: Environmental zooplankton Targeted Locus (Loci)

description: This study investigated the diversity of metazoan plankton around three reef systems in the central/southern Red Sea utilising 18S rRNA amplicon sequencing.
DOI: 10.15468/vsogsu
title: It was verified the impact of irrigation treatments (wet, optimal, dry and very dry) and three potato cultivars on soil microbial community.

description: The water management was classified into four soil water matric potential mean: -15 kPa (Wet), -25 kPa (Optimal), -30 kPa (Dry) and -45 kPa (Very Dry). The three potato cultivars used were Goldrush (most cultivated mid-season variety in Quebec), Envol (popular early variety), and Red Maria (mid-late to late variety).
DOI: 10.15468/lmjmgy
title: Biological Impacts of Ocean Acidification

description: Impacts of ocean acidification and warming on marine macroalgae and its microbiota
DOI: 10.5281/zenodo.16833315
title: Dataset: Analyzing Festival-based Public Engagement with Research: Developing and Testing an Impact Framework for Understanding Audience Responses to Science Festivals in Europe

description: This set of data, survey designs (specifications) and details are underpinning a journal manuscript submitted to Open Research Europe. The topic of that paper is presented below:Public engagement festivals offer rare opportunities for researchers and citizens to converse, yet organisers often lack robust evidence about whether such events change audience perceptions. Repeated measures surveys were used during European Researchers’ Night festivals in Malta and Ireland to explore how attending audiences perceive “research” and “researchers.” Open‑ended responses were collected before the events and again afterwards and then analysed inductively using grounded‑theory techniques to generate a set of thematic codes. Those codes were distilled into an indicators framework that categorises positive, negative and neutral perceptions of both research and researchers. The framework was piloted quantitatively to assess whether indicators linked to the European Commission’s expected impacts appeared more frequently after the events. Results showed that positive perceptions of research increased, particularly awareness of its social value, while perceptions of researchers were more ambivalent. The indicator‑based approach also highlighted where stereotypes endured or where respondents remained uncertain. These findings provide organisers with a concise set of evidence‑based indicators for evaluating festival impacts and suggest that pairing open‑ended research with structured measures can improve the efficiency, reliability and generalisability of public engagement evaluations. Future applications should test the framework across diverse settings and investigate how to reach audiences who are not already positively disposed toward science.