cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.5h979/15
title: tpc133710_SupplementalDS15
DOI: 10.5061/dryad.5h979/16
title: tpc133710_SupplementalDS16
DOI: 10.5061/dryad.rc1k4/1
title: Williams and Johnson

description: Optimal harvesting policies
DOI: 10.5061/dryad.qm4j1.3
title: Data from: Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales
DOI: 10.5061/dryad.qm4j1.3/1.3
title: Supplemental Figures
DOI: 10.5061/dryad.qm4j1.3/2.3
title: Supplemental-data- GPhoCS-output
DOI: 10.5061/dryad.qm4j1.3/3.3
title: Supplementary Tables
DOI: 10.5061/dryad.qm4j1.3/4.3
title: Supplementary Methods
DOI: 10.5061/dryad.qm4j1.3/5.2
title: full

description: Fasta alignments of sequences from ultraconserved elements containing up to eight individuals from each of five study species. All alignments in a given species that contain at least one individual in each of four areas of endemism are included.
DOI: 10.5061/dryad.qm4j1.3/6.2
title: orthologs

description: Fasta alignments of sequences from ultraconserved elements containing up to eight individuals from each of five study species. Only the 166 loci that are present in all five full datasets are included.
DOI: 10.5061/dryad.qm4j1.3/7.2
title: interspecies_full

description: Fasta alignments of sequences from ultraconserved elements containing up to thirty-six individuals from five study species. Alignments include samples from all species, and any loci for which data was recovered for at least two individuals.
DOI: 10.5061/dryad.qm4j1.3/8.2
title: interspecies_reduced

description: Fasta alignments of sequences from ultraconserved elements containing up to thirty-six individuals from five study species. Alignments include samples from all species, but only loci for which at least one individual is represented in every area of endemism in all study species.
DOI: 10.5061/dryad.qm4j1.3/9.3
title: mtDNA_UCE_taxa

description: Mitochondrial DNA sequences from the gene cytochrome b from the same samples for which UCE data were obtained.
DOI: 10.5061/dryad.5q1sb.1
title: Data from: Host species and environmental effects on bacterial communities associated with Drosophila in the laboratory and in the natural environment
DOI: 10.5061/dryad.5q1sb.2
title: Data from: Host species and environmental effects on bacterial communities associated with Drosophila in the laboratory and in the natural environment
DOI: 10.5061/dryad.5q1sb.2/1.2
title: Staubachetal2

description: The file contains a metadata spreadsheet that provides detailed information about samples and another zip file that contains a fasta formatted sequence file for each sample in the study as well as a sequence quality file for each sample
DOI: 10.5061/dryad.95gq1/1
title: EvoOfInt_EvoBio

description: This data package includes raw data, as well as R code and other information required to reproduce all results in the paper. Raw data and specimen information are provided as both tab-limited text file and R object. Phylogenetic trees are provided as both R object and a nexus file. Other information is provided as R objects. A detailed README file is also included
DOI: 10.5061/dryad.mf3sp/1
title: Thomas and Crowther Isotope Turnover Data

description: This data set contains C and N stable isotope turnover data collected from ~80 published studies. Isotopic turnover data from a range of tissues is included, for species ranging in size from ~1mg to &gt;2000kg.
DOI: 10.5061/dryad.jq966/1
title: De Waal et al Annual Asteraceae fruit set and visitation rates experimental arrays

description: This file contains fruit set and pollinator visitation rates of three annual Asteraceae (Dimorphotheca pinnata,  Ursinia cakilefolia, U. anthemoides) in experimental arrays with four treatments (LDD = low density, dispersed; LDC = low density, clumped; HD = high density; LD = low density), as well as hand pollination experiments to establish the breeding system of D. pinnata.
DOI: 10.5061/dryad.vb73f/1
title: skew_indices
DOI: 10.5061/dryad.dc7s2/1
title: MS calibration data DNA Pairs

description: This file contains data for extracted and mixed nDNA (i.e. black data in Fig.1), and shows microsatellite peak heights and peak areas for each of two strains. DNA is mixed in known ratios, and peak height and peak area ratios are calculated.
DOI: 10.5061/dryad.dc7s2/2
title: MS calibration data CELL Pairs

description: This data contains calibrations for mixtures of cells from pairs of strains (i.e. red data in Fig.1).
DOI: 10.5061/dryad.dc7s2/3
title: MS calibration data CELL Multi

description: This data file contains calibration data for multistrain testing of the genotyping assay (i.e. data analysed in SI 1).
DOI: 10.5061/dryad.dc7s2/4
title: Dynamics example data

description: Example dynamics from a microcosm experiment of two strains of Oxyrrhis over 13 days under two pCO2 levels, using the method for strain frequency determination described here.
DOI: 10.5061/dryad.m2v4m/1
title: NR_TEST_DATA

description: Data from Robar et al. 2010 used to examine performance of multiple imputation in a meta-regression framework.    Robar, N., Burness, G., & Murray, D. L. (2010). Tropics, trophics and taxonomy: the determinants of parasite‐associated host mortality. Oikos, 119(8), 1273-1280.
DOI: 10.5061/dryad.m2v4m/2
title: NEW_ERDATA

description: Data from Rees et al. 2008 used to examine performance of multiple imputation in a meta-regression framework.        Rees, E. E., Pond, B. A., Phillips, J. R., & Murray, D. (2008). Raccoon ecology database: a resource for population dynamics modelling and meta-analysis. Ecological Informatics, 3(1), 87-96.
DOI: 10.5061/dryad.612jm/1
title: ConnectMatrix files of the subjects

description: These are structures files storing the connectivity matrices of the subjects.
DOI: 10.5061/dryad.612jm/2
title: Simulated lesions files

description: These files summarize the network properties in the case of different lesion types.
DOI: 10.5061/dryad.hn4tn/1
title: DNA microsatelitte allele data set

description: DNA microsatelitte data file for the 16 loci used in the study (RlCA5 and Res16 were not used for any of the analyses). (txt tabulated format)
DOI: 10.5061/dryad.1pj40/1
title: raw data_QL study_20141125

description: preliminary analysis
DOI: 10.5061/dryad.6j19m/1
title: DataHernandezBarrios

description: Data from all censuses on experimental leaf harvesting of Chamaedorea ernesti-augustii
DOI: 10.5061/dryad.68434/1
title: Data and Scripts

description: All data and scripts required to reproduce the analysis presented in the article.
DOI: 10.5061/dryad.r61r8/1
title: PlosOne H1/IC31 TB vaccine study

description: H1/IC31 TB Subunit Vaccine trial in HIV-Infected Adults with CD4+ Lymphocyte Counts Greater than 350 cells/mm3
DOI: 10.5061/dryad.b4m2c/1
title: Supplementary Table 1

description: Tree file containing all trees used in analyses.
DOI: 10.5061/dryad.b4m2c/2
title: Supplementary Figure 1

description: Percentage of trees wherein a given taxon pair are separated by two nodes or fewer (e.g. sister-taxa are separated by 1 node). Zero-values indicate that a given pair are always more than 2 nodes apart, in our dataset of 42 trees including morphological (blue, n=27) and molecular (green, n=15) datasets.
DOI: 10.5061/dryad.b4m2c/3
title: Supplementary Figure 2

description: Multidimensional scaling plot of 5000 randomly-generated trees including 8 molluscan classes, and our dataset of 42 trees from the literature (morphological, blue circles; molecular, red circles).  Trees plotted outside of the randomly generated trees represent source trees with fewer than 8 classes in their topology.
DOI: 10.5061/dryad.b4m2c/4
title: Supplementary Tables 2-4

description: TABLE S2. Tree notation, scores, permutation tail probability tests, source tree fit, and related data for each of the molecular supertrees analyses.TABLE S3. Tree notation, scores, permutation tail probability tests, source tree fit, and related data for each of the morphological supertrees analyses.TABLE S4. Symmetric distances between supertrees. Partition: Morph = morphology, Molec = molecular.
DOI: 10.5061/dryad.cb051/1
title: Scheffers et al Biology Letters Global Microhabitat Temperature Data

description: Data provided include: study, year of publication, biogeographical province, standardized microhabitat considered in study, standardized macrohabitat considered in study, elevation, difference in mean temperature, difference in maximum temperature, difference in variance for microhabitats and macrohabitats
DOI: 10.5061/dryad.4mg2r/1
title: Genotypic_data_Provenances_Teak_Natural_Distribution

description: The data is delivered in an input format which can be used in the GenAlEx 6.5 software (Peakall and Smouse 2006, 2012) http://biology-assets.anu.edu.au/GenAlEx/Welcome.html, from where the data can be exported to various other formats.In the first row of the spreadsheet are given numbers which characterize the data: cell A1=”6” says that there are 6 SSR markers, B1=”721” says that there are 721 samples in total, C1=”29” says that there are 29 provenances in the data set. Cell D1=”22” until cell AF1=”27” give the number of samples in each of the 29 provenances. AG=”1” says that there is one region as a starting point. Finally cell AH=”721”says that there are 721 sample sin this single region. In row no. 2 is given information about the data and the names/numbers of the 29 provenances (corresponding to the ones used in the publication) are given in the cells D2 to AF2. In row no. 3 are given headings for the data columns. “Sample No.” (column 1) is an arbitrary number for the samples within provenances. This is not a unique number; several samples have the same sample no. (e.g. “1”). “Population” is the name/number of the provenances. In the following 12 columns (2 for each of the 6 SSRs) the SSR data is coming in the form of alleles coded as their integer size in base pairs (bp). So in column C and D (starting in cells C4 and D4) are the data for the SSR marker 1TA06, etc.
DOI: 10.5061/dryad.4mg2r/2
title: Genotypic_data_Provenances_Teak_Natural_Distribution

description: The same data as in the Genotypic_data_Provenances_Teak_Natural_Distribution.xlsx file (described above), just given as comma delimited file format, starting with one line giving the headings for the rest of the data. “Sample No.” is an arbitrary number for the samples within provenances. This is not a unique number; several samples have the same sample no. (e.g. “1”). “Population” is the name/number of the provenances. The following 12 numbers (2 for each of the 6 SSRs) are the SSR data coming in the form of alleles coded as their integer size in base pairs (bp).
DOI: 10.5061/dryad.74gp6/1
title: Mesocosm data for crustacean zooplankton under turbulence

description: Mesocosm data, collected in the field. Data includes the raw crustacean zooplankton data collected during a six week study period per each sampling day and mesocosm (indicated by sample number); the biomass of crustacean zooplankton in each size class per sampling day and mesocosm (indicated by sample number); physico-chemical data measured in the mesocosms during each sampling day; and average RMS velocities measured for each mesocosm (indicated by pond). The treatments indicated by numbers in the file correspond to: 11=CALM-CNTRL; 12=CALM-I; 13=CALM-F; 14=CALM-IF; 21=TURB-CNTRL; 22=TURB-I; 23=TURB-F; 24=TURB-IF.
DOI: 10.5061/dryad.31614/1
title: PlantRateEstimation

description: This online data supplement contains the assoicated data and replicatable analyses to estimate branch rates for sister-pair analyses from the paper "Exploring the relationships between mutation rates, life history, genome size, environment and species richness in flowering plants" Bromham, Lindell, Hua, Xia, Lanfear, Robert, Cowman, Peter F.
DOI: 10.5061/dryad.qm4j1.1.1
title: Data from: Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales
DOI: 10.5061/dryad.qm4j1.2/5
title: mtDNA_UCE_taxa

description: Mitochondrial DNA sequences from the gene cytochrome b from the same samples for which UCE data were obtained.
DOI: 10.5061/dryad.f8426/1
title: Bill Colour in Passerines

description: Bill colour and life history variables for 1605 species of Passerine birds, from Africa, Australia and New Zealand. This data set includes red-chromaticity values for the upper and lower mandible of male and female specimens for each species, as measured from plates in bird handbooks (see text of article for details). Additionally we include data on non-breeding sociality, breeding dispersion, sexual size dimorphism, sexual dichromatism and body size, collected from bird handbooks and from Dale et al. 2007. Proc R Soc B 274:2971-2979 (see text for details).
DOI: 10.5061/dryad.3j2j9/1
title: Worm data

description: The location of worms across time as well as the occurrence of Omega and non-Omega turns. Data was taken at 3 frames per second for 30 minutes. X- and Y- positions represent pixels on the camera.
DOI: 10.5061/dryad.3j2j9/2
title: Infotaxis algorithm

description: Implementation of the infotaxis algorithm
DOI: 10.5061/dryad.3j2j9/3
title: trajectory_individual
DOI: 10.5061/dryad.25j57/1
title: SicyopterusStimpsoniMicrosatelliteData

description: Microsatellite allelic data for each individual.
DOI: 10.5061/dryad.25j57/2
title: SicyopterusStimpsoniMorphologyData

description: Morphological data for each individual
DOI: 10.5061/dryad.25j57/3
title: SicyopterusStimpsoniSamplingSiteInfo
DOI: 10.5061/dryad.25j57/4
title: JMPScriptsforMorphology
DOI: 10.5061/dryad.2dp4q/1
title: monoprom_fecundity1_continuously_housed_with_males_1_timepoint
DOI: 10.5061/dryad.2dp4q/2
title: monoprom_fecundity2_single_mating_1_timepoint
DOI: 10.5061/dryad.2dp4q/3
title: monoprom_fecundity3_single_mating_timeseries
DOI: 10.5061/dryad.2dp4q/4
title: monoprom_fecundity4_continuously_housed_with_males_timeseries
DOI: 10.5061/dryad.2dp4q/5
title: monoprom_REVERSED_fecundity_continuously_housed_with_males_1_timepoint
DOI: 10.5061/dryad.2dp4q/6
title: monoprom_wing_length
DOI: 10.5061/dryad.vt55c/1
title: The display counts for all individual plants in all experiments
DOI: 10.5061/dryad.vt55c/2
title: Temperature, precipitation, and humidity data during the course of all experiments
DOI: 10.5061/dryad.vt55c/3
title: Data for marked and recounted flowers used to estimate floral longevity
DOI: 10.5061/dryad.vt55c/4
title: The volumetric water content of soils for watering treatments from experiment 3
DOI: 10.5061/dryad.9dk62/1
title: Supplementary Material

description: Online supplementary material supporting the main text. Contains three sections: 1) Experimental results when using the PThreads and MPI version of PLL 2) Details about the comparison with BEAGLE 3) TreeBase Matrix IDs used for assessing the performance of IQ-Tree
DOI: 10.5061/dryad.669h5/1
title: Data used to value nature-based recreation

description: This is a short data file containing data collected in questionnaire surveys in 2011 of visitors to a wetland restoration project at Wicken Fen. It is divided into short sections that list different categories of  data from the questionnaire. It also lists data received from the National Trust about visitor numbers in 2010.
DOI: 10.5061/dryad.7rq20/1
title: Turning bias data

description: Data for two experiments investigating turning bias in ants exploring unknown nest sites and branching mazes.
DOI: 10.5061/dryad.ch86c/1
title: Between species mating trial data

description: This file contains the data for time spent with conspecific (Con) or heterospecific (Het) mates when focal fish had the choice between both.  Time measured in seconds (out of 600 second trials).  Allopatric and Sympatric focal fish compared. Data for Figure 2 of the paper.
DOI: 10.5061/dryad.ch86c/2
title: Between population female mating trial data

description: This file contains association time (in seconds) for female L. parva given the choice between males of their own population or males of a foreign population.  Foreign populations could either be from the same salinity environment (ecology) or different salinity.  Females came from populations were either sympatric with L. goodei or allopatric.  Data for Figure 3 and Figure 5.
DOI: 10.5061/dryad.ch86c/3
title: Between population male mating trial data

description: This file contains association time (in seconds) for L. parva males choosing between females from their own population or a foreign population.  Focal males were from populations sympatric with L. goodei or allopatric. Data from Figure 4, Figure 5, and Figure A2.
DOI: 10.5061/dryad.ch86c/4
title: Between population egg laying data 2 hours

description: Number of eggs female L. parva laid with males from their own or foreign populations over a 2 hour period with each male.  Data for Figure 6.
DOI: 10.5061/dryad.1485f/1
title: Daily H1N1pdm09 cases

description: This data file contains daily information on laboratory-confirmed cases in the first wave of the 2009 influenza A(H1N1) pandemic in Hong Kong.
DOI: 10.5061/dryad.1485f/2
title: H1N1 survey results

description: This data file contains information collected from the 13 waves of surveys conducted in Hong Kong.
DOI: 10.5061/dryad.1485f/3
title: Read me (data file explanations)
DOI: 10.5061/dryad.1485f/4
title: Scripts to reformat the raw data
DOI: 10.5061/dryad.4j12q/1
title: Raw data_BMJ 2014-005984
DOI: 10.5061/dryad.ch86c/5
title: Between population egg laying data 10 days

description: Number of eggs laid over 10 days for sympatric Indian River (IR) females and allopatric Texas (TX) females in no-choice trials.  Data for Figure A3.
DOI: 10.5061/dryad.ch86c/6
title: Male morphology

description: Standard length and total anal fin area as measured from pictures of L. parva (IR,SJ,GC,LB) and L. goodei (UB) males.  Data for Figure A4.
DOI: 10.5061/dryad.ch86c/7
title: Latency to mate between species

description: Latency to mate (in days) when Indian River L. parva (IR-sympatric) were paired with Blue Springs L. goodei (BS-allopatric).  Data for Figure A5.
DOI: 10.5061/dryad.1485f/5
title: Figure 2 scripts
DOI: 10.5061/dryad.1485f/6
title: Table 3 scripts
DOI: 10.5061/dryad.1485f/7
title: Table 4 scripts
DOI: 10.5061/dryad.1485f/8
title: Table 5 scripts
DOI: 10.5061/dryad.46t7q/1
title: Data from Receptive females mitigate costs of sexual conflict

description: data of three experiments: comparison of (1) remating receptivity, (2) costs of male exposure, and (3) costs of mating between females from selection lines.
DOI: 10.5061/dryad.f4nh9/1
title: MS2014 Green turtle Correlative model

description: data output for predicted performance
DOI: 10.5061/dryad.g2785/1
title: Figure raw data

description: The file provides the raw data of the figures 2-9
DOI: 10.5061/dryad.n7396/1
title: Locomotor activity for D. serrata RILs across 6 temperatures and the 49 QTL markers.

description: Parental flies originally collected from the field and inbred in the lab. TriKinetic’s Drosophilla Activity Monitors (DAMs) used to record fly activity. The 49 markers consist of microsatelites, dCAPS, and EST derived SNPs. See the Readme file for more information.
DOI: 10.5061/dryad.0j6t7/1
title: Ihle et al genotype and phenotype data_for dryad

description: This file is a spreadsheet containing the genotype and phenotype data used to identify genetic regions associated with ovary size and juvenile hormone responsiveness to Vitellogenin knockdown.
DOI: 10.5061/dryad.7b187/1
title: PHYSICIAN ATTIRE DATA ABSTRACTION FILE (EXCEL)

description: The "Raw Excel Table 1" tab is where we input the abstracted data from each included study in our systematic review including Author name (for reference), Study Design, Region, Clinical Setting (Context), Patient Characteristics (Number, Age, Gender, Education Level, D&B Score, Attire Compared, Whether a physician wearing a white coat was specified, Whether or not study followed a clinical encounter, Perceptions/Preferences Measured, Influence/Preference Expressed for each study and reviewer comments on each study. Each pivot table corresponds to figures that are associated with the study.
DOI: 10.5061/dryad.7k7k5/1
title: Results

description: Final results, used for figures and analyses
DOI: 10.5061/dryad.7k7k5/2
title: Data
DOI: 10.5061/dryad.j61sp/1
title: cold

description: Data was collected in a temperature-controlled growth chamber and is described in the readme file.
DOI: 10.5061/dryad.j61sp/2
title: warm_treatment

description: This data was collected in a temperature-controlled growth chamber and is described in detail in the readme file.
DOI: 10.5061/dryad.pn63g/1
title: Biomass of riparian vegetation

description: Biomass of functional groups (forbs, shrubs and grasses) of riparian vegetation. Data were sampled for three years. Included is also pysical data for the different stream reaches.
DOI: 10.5061/dryad.pn63g/2
title: Instream vegetation cover

description: Instream bryophyte and algae cover from eight stream reaches. Physical data such as substrate, depth and discharge of the stream reaches is also included in the data set. Information of sampling can be found in the paper.
DOI: 10.5061/dryad.5sn8m/1
title: Piper_plotdata

description: File	Piper_plotdataThis file includes all aboveground plant community measurements.
DOI: 10.5061/dryad.pn63g/3
title: Cover of riparian bryophytes

description: Percent cover of riparian bryophytes along eight stream reaches at different elevations from the channel. Physical data and presence of anchor ice is also included.
DOI: 10.5061/dryad.pn63g/4
title: Temperature and water levels

description: Data from temperature and pressure loggers,  both air and water. From eight stream reaches 2011-2013.
DOI: 10.5061/dryad.pn63g/5
title: Ice inventory data

description: Percent cover of surface, suspended and anchor ice along eight stream reaches, 2011-2013.
DOI: 10.5061/dryad.pn63g/6
title: Cover of vascular plants 2011

description: Percent cover of vascular plant species in the riparian zone and three different elevations from the stream channel. Data from 2011.
DOI: 10.5061/dryad.pn63g/7
title: Cover of vascular plants 2012

description: Percent cover of vascular plant species in the riparian zone at three different elevations from the stream channel. Data from 2012.
DOI: 10.5061/dryad.pn63g/8
title: Cover of vascular plants 2013

description: Percent cover of vascular plant species in the riparian zone at three different elevations from the stream channel. Data from 2013.
DOI: 10.5061/dryad.pn63g/9
title: R-script

description: R-script for analysis of biomass of different functional groups, riparian bryophyte cover and in-stream cover of algae and bryophytes.
DOI: 10.5061/dryad.5sn8m/2
title: Piper_soildata

description: File	Piper_soilsdataThis file includes all soil variables measured in both the A and B soil horizons at each plot.
DOI: 10.5061/dryad.5sn8m/3
title: Piper_plantcommunity

description: File	Piper_plantcommunityThis file includes estimates of percent cover for all vascular plant species encountered in the plots.
DOI: 10.5061/dryad.5sn8m/4
title: Piper_Ahorizon_bacteria_phylum

description: File	Piper_Ahorizon_bacteria_phylumThis file includes abundance estimates for bacterial OTUs in A-horizon soil samples clustered at the phylum level. Taxonomic assignment according to the Greengenes 2011 taxonomy
DOI: 10.5061/dryad.5sn8m/5
title: Piper_Ahorizon_bacteria_order

description: File	Piper_Ahorizon_bacteria_orderThis file includes abundance estimates for bacterial OTUs in A-horizon soil samples clustered at the order level.	Taxonomic assignment according to the Greengenes 2011 taxonomy
DOI: 10.5061/dryad.5sn8m/6
title: Piper_Bhorizon_bacteria_phylum

description: File	Piper_Bhorizon_bacteria_phylumThis file includes abundance estimates for bacterial OTUs in B-horizon soil samples clustered at the phylum level.	Taxonomic assignment according to the Greengenes 2011 taxonomy
DOI: 10.5061/dryad.5sn8m/7
title: Piper_Bhorizon_bacteria_order

description: File	Piper_Bhorizon_bacteria_orderThis file includes abundance estimates for bacterial OTUs in B-horizon soil samples clustered at the order level.	Taxonomic assignment according to the Greengenes 2011 taxonomy