cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.sgbwjb
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cacatua galerita",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062722-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7kyyu2
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Falconiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-30 -30,0 -30,0 0,-30 0,-30 -30))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062725-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8zq4h2
title: Occurrence Download

description: A dataset listing the 19 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry MULTIPOLYGON(((30.78377 -25.55424,30.78314 -25.55426,30.78305 -25.55396,30.78294 -25.55368,30.78215 -25.55239,30.78094 -25.5514,30.78043 -25.55119,30.78005 -25.55096,30.77948 -25.55082,30.77945 -25.55081,30.77928 -25.55077,30.77928 -25.55077,30.77838 -25.55056,30.77666 -25.55071,30.7751 -25.55138,30.77468 -25.55165,30.7745 -25.5518,30.77417 -25.55185,30.77388 -25.55192,30.77216 -25.55267,30.77088 -25.55396,30.77076 -25.55415,30.77071 -25.55426,30.77052 -25.55428,30.77029 -25.55431,30.76869 -25.55478,30.76735 -25.55572,30.76728 -25.55579,30.76721 -25.55585,30.76666 -25.55641,30.76658 -25.5565,30.76646 -25.55663,30.76562 -25.55784,30.76524 -25.55923,30.76536 -25.56066,30.76597 -25.56199,30.76701 -25.56307,30.76837 -25.5638,30.76897 -25.56401,30.77044 -25.56432,30.77089 -25.56429,30.77091 -25.5643,30.77238 -25.56468,30.77282 -25.56474,30.77368 -25.56477,30.77371 -25.56477,30.77473 -25.56513,30.7751 -25.5652,30.77589 -25.56531,30.77627 -25.56533,30.77725 -25.56521,30.77742 -25.56526,30.77931 -25.56513,30.77953 -25.56508,30.77992 -25.56491,30.7804 -25.56513,30.78085 -25.56527,30.78237 -25.56551,30.78281 -25.56552,30.78302 -25.56552,30.78379 -25.5655,30.784 -25.56549,30.78472 -25.56544,30.78516 -25.5654,30.78655 -25.56519,30.78744 -25.56506,30.78855 -25.56492,30.78943 -25.56481,30.79024 -25.56472,30.79152 -25.56441,30.79266 -25.5638,30.79371 -25.56305,30.79477 -25.56202,30.79542 -25.56075,30.79561 -25.55935,30.79532 -25.55797,30.79458 -25.55674,30.79345 -25.55578,30.79205 -25.55517,30.79052 -25.55499,30.78983 -25.555,30.78936 -25.55509,30.7889 -25.55499,30.78842 -25.55496,30.78826 -25.55495,30.78773 -25.55493,30.78754 -25.55492,30.78668 -25.55491,30.78607 -25.55499,30.78604 -25.55497,30.78553 -25.55475,30.78543 -25.55471,30.78523 -25.55462,30.78377 -25.55424)))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset's 19 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062686-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z4d6xh
title: Occurrence Download

description: A dataset containing 527 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Maldives",
 "Year is 2014",
 "InstitutionCode is iNaturalist"
 ]
}

 The dataset includes 527 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062724-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9w96ry
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vasticardium flavum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is one of (Absent)"
 ]
 }
 }
 ]
}

 The dataset includes 17 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062727-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.82144/6b7f99c9
title: Happywhale - Striped dolphin in North Pacific Ocean

description: Original provider:
Happywhale

Dataset credits:
Happywhale and contributors

Abstract:
Happywhale.com is a resource to help you know whales as individuals, and to benefit conservation science with rich data about individual whales.
DOI: 10.82144/4ec0fb50
title: Happywhale - Indian ocean bottlenose dolphin in South Pacific Ocean

description: Original provider:
Happywhale

Dataset credits:
Happywhale and contributors

Abstract:
Happywhale.com is a resource to help you know whales as individuals, and to benefit conservation science with rich data about individual whales.
DOI: 10.15468/dl.esv3ps
title: Occurrence Download

description: A dataset containing 1611 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Maldives",
 "Year is 2015",
 "InstitutionCode is iNaturalist"
 ]
}

 The dataset includes 1611 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062731-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tpqjnn
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eos reticulata",
 "Country is Indonesia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062732-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.53982d
title: Occurrence Download

description: A dataset containing 1096802 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pelecaniformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((30 -30,60 -30,60 0,30 0,30 -30))"
 ]
}

 The dataset includes 1096802 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062666-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t5eee3
title: Occurrence Download

description: A dataset containing 1083149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-158.35729 21.18363,-157.53678 21.18363,-157.53678 21.77442,-158.35729 21.77442,-158.35729 21.18363))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 1970-2025"
 ]
}

 The dataset includes 1083149 records from 410 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062639-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xy2s2y
title: Occurrence Download

description: A dataset containing 1971 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Vulpes macrotis mutica"
 ]
}

 The dataset includes 1971 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062733-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30138733
title: R code used to generate figures and data files needed to run the code.

description: R code used to generate figures together with data files needed to run the code.
DOI: 10.6084/m9.figshare.30138733.v1
title: R code used to generate figures and data files needed to run the code.

description: R code used to generate figures together with data files needed to run the code.
DOI: 10.15468/dl.5gxpzk
title: Occurrence Download

description: A dataset containing 677 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Maldives",
 "Year is 2016",
 "InstitutionCode is iNaturalist"
 ]
}

 The dataset includes 677 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062734-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vpj8vn
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tanygnathus lucionensis",
 "Country is Indonesia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062735-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14756639
title: Processed Data for Results in Crystal Hypergraph Neural Networks

description: materials_hypergraph_data contains the subdirectories:



proc_dataset_matbench_mp_is_metal       - processed data for Materials Project metalicity target set

proc_dataset_matbench_mp_gap              - processed data for Materials Project band gap target set

proc_dataset_matbench_mp_e_form         - processed data for Materials Project formation energy target set

proc_dataset_matbench_log_kvrh             - processed data for MatBench bulk moduli target set

proc_dataset_matbench_log_gvrh             - processed data for MatBench shear moduli target set

proc_dataset_matbench_dielectric             - processed data for MatBench dielectric constants target set

proc_dataset_matbench_perovskites         - processed data for MatBench perovskite formation energy target set

proc_dataset_matbench_phonons             - processed data for MatBench highest frequency phonon peak target set

proc_dataset_matbench_jdft2d                  - processed data for MatBench exfoliation energy target set


Each processed dataset contains a data file for every material with hyperedge indices (for motifs and triplets), edge indices (for bonds), edge features (Gaussian expansion of interatomic distance as edge_attr), and hyperedge features (Gaussian expansion of angle for triplets and local structure order parameters and continuous symmetry measures for motifs) saved as pytorch tensors.
DOI: 10.5281/zenodo.17298461
title: Processed Data for Results in Crystal Hypergraph Neural Networks

description: materials_hypergraph_data contains the subdirectories:



proc_dataset_matbench_mp_is_metal       - processed data for Materials Project metalicity target set

proc_dataset_matbench_mp_gap              - processed data for Materials Project band gap target set

proc_dataset_matbench_mp_e_form         - processed data for Materials Project formation energy target set

proc_dataset_matbench_log_kvrh             - processed data for MatBench bulk moduli target set

proc_dataset_matbench_log_gvrh             - processed data for MatBench shear moduli target set

proc_dataset_matbench_dielectric             - processed data for MatBench dielectric constants target set

proc_dataset_matbench_perovskites         - processed data for MatBench perovskite formation energy target set

proc_dataset_matbench_phonons             - processed data for MatBench highest frequency phonon peak target set

proc_dataset_matbench_jdft2d                  - processed data for MatBench exfoliation energy target set


Each processed dataset contains a data file for every material with hyperedge indices (for motifs and triplets), edge indices (for bonds), edge features (Gaussian expansion of interatomic distance as edge_attr), and hyperedge features (Gaussian expansion of angle for triplets and local structure order parameters and continuous symmetry measures for motifs) saved as pytorch tensors.
DOI: 10.6084/m9.figshare.30311713
title: Data Base

description: Effect of forest loss on amphibians and reptiles<br>
DOI: 10.6084/m9.figshare.30311713.v1
title: Data Base

description: Effect of forest loss on amphibians and reptiles<br>
DOI: 10.6084/m9.figshare.30138844
title: Source data for figures

description: Source data for figures
DOI: 10.6084/m9.figshare.30138844.v1
title: Source data for figures

description: Source data for figures
DOI: 10.15468/dl.jthe5x
title: Occurrence Download

description: A dataset containing 375 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Maldives",
 "Year is 2017",
 "InstitutionCode is iNaturalist"
 ]
}

 The dataset includes 375 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062738-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30138709
title: Validation and Complementation studies sequencing data

description: QIIME output from 16S sequencing of samples from the Validation and Complementation studies (VC)
DOI: 10.6084/m9.figshare.30138709.v1
title: Validation and Complementation studies sequencing data

description: QIIME output from 16S sequencing of samples from the Validation and Complementation studies (VC)
DOI: 10.15468/dl.w6vsx5
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pelodiscus sinensis",
 "Country is Indonesia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062739-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8rph48
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pelodiscus sinensis",
 "Country is Malaysia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062741-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.24kex4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pelodiscus sinensis",
 "Country is Iran (Islamic Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062740-250920141307145/datasets/export for details.
DOI: 10.5281/zenodo.15522463
title: Appendix 1 - Records of freshwater fish at different altitudes in Brazil

description: Appendix 1 related to the article :

 

Guedes GHS, Luz CHP, Souza VJ, Araújo FG (2025) A fish frontier? Itatiaia expedition and biodiversity repositories reveal gaps in fish occurrences in Brazil’s high-altitude aquatic ecosystems. Zoologia 42: e24077. https://doi.org/10.1590/S1984-4689.v42.e24077









 

To pinpoint gaps in our understanding of fish occurrences above 2,000 m in Brazil, we retrieved records from three major open‐access repositories of museum and collection data: SpeciesLink (http://specieslink.net), Salve (http://salve.icmbio.gov.br), and the Brazilian node of GBIF, SiBBr (http://sibbr.gov.br). These platforms were chosen for their comprehensive coverage of Brazilian biological collections and, in Salve’s case, its inclusion of records tied to collection permits, threatened species, and surveys within federal conservation units—critical, since Brazil’s highest elevations lie inside protected areas (ICMBio 2024).

We applied tailored primary filters to each database to suit their respective query systems. In SpeciesLink, we searched “Actinopterygii,” retrieving 426 125 records. In Salve/ICMBio, we used “continental fishes,” yielding 246 313 entries. In SiBBr, we combined “Actinopterygii,” “present,” and “Brazil,” limiting results to the “collection” attribute and obtaining 325 445 records. Altogether, these queries produced 997 893 occurrence records. All searches were performed in October 2024, and the full dataset is provided in Supplementary Information S1.

To assign elevation to each record, we overlaid their geographic coordinates onto a global Digital Surface Model (DSM) with ~30 m horizontal resolution (~1 arc-second) from the Japan Aerospace Exploration Agency (http://www.eorc.jaxa.jp). Using QGIS 3.32 “Lima” (QGIS Core Team 2024) and the Point Sampling Tool plugin within the WGS 84 CRS, we extracted the altitude (m a.s.l.) for every occurrence.
DOI: 10.5281/zenodo.15522464
title: Appendix 1 - Records of freshwater fish at different altitudes in Brazil

description: Appendix 1 related to the article :

 

Guedes GHS, Luz CHP, Souza VJ, Araújo FG (2025) A fish frontier? Itatiaia expedition and biodiversity repositories reveal gaps in fish occurrences in Brazil’s high-altitude aquatic ecosystems. Zoologia 42: e24077. https://doi.org/10.1590/S1984-4689.v42.e24077









 

To pinpoint gaps in our understanding of fish occurrences above 2,000 m in Brazil, we retrieved records from three major open‐access repositories of museum and collection data: SpeciesLink (http://specieslink.net), Salve (http://salve.icmbio.gov.br), and the Brazilian node of GBIF, SiBBr (http://sibbr.gov.br). These platforms were chosen for their comprehensive coverage of Brazilian biological collections and, in Salve’s case, its inclusion of records tied to collection permits, threatened species, and surveys within federal conservation units—critical, since Brazil’s highest elevations lie inside protected areas (ICMBio 2024).

We applied tailored primary filters to each database to suit their respective query systems. In SpeciesLink, we searched “Actinopterygii,” retrieving 426 125 records. In Salve/ICMBio, we used “continental fishes,” yielding 246 313 entries. In SiBBr, we combined “Actinopterygii,” “present,” and “Brazil,” limiting results to the “collection” attribute and obtaining 325 445 records. Altogether, these queries produced 997 893 occurrence records. All searches were performed in October 2024, and the full dataset is provided in Supplementary Information S1.

To assign elevation to each record, we overlaid their geographic coordinates onto a global Digital Surface Model (DSM) with ~30 m horizontal resolution (~1 arc-second) from the Japan Aerospace Exploration Agency (http://www.eorc.jaxa.jp). Using QGIS 3.32 “Lima” (QGIS Core Team 2024) and the Point Sampling Tool plugin within the WGS 84 CRS, we extracted the altitude (m a.s.l.) for every occurrence.
DOI: 10.6084/m9.figshare.30138697
title: MDP sequencing data

description: QIIME output from 16S sequencing of samples from the Middle American Diversity Panel study (MDP)
DOI: 10.6084/m9.figshare.30138697.v1
title: MDP sequencing data

description: QIIME output from 16S sequencing of samples from the Middle American Diversity Panel study (MDP)
DOI: 10.5281/zenodo.17298619
title: Transcriptomic classification of prolactinomas and somatotropinomas identifies subtypes with variable resistance to treatment

description: Transcriptome (matrix of raw counts) of 46 prolactinomas and 58 somatotropinomas
DOI: 10.5281/zenodo.17298620
title: Transcriptomic classification of prolactinomas and somatotropinomas identifies subtypes with variable resistance to treatment

description: Transcriptome (matrix of raw counts) of 46 prolactinomas and 58 somatotropinomas
DOI: 10.6084/m9.figshare.30138673
title: Population Structure sequencing data

description: QIIME output from 16S sequencing of samples from the Population Structure study (ScreenBean)
DOI: 10.6084/m9.figshare.30138673.v1
title: Population Structure sequencing data

description: QIIME output from 16S sequencing of samples from the Population Structure study (ScreenBean)
DOI: 10.15468/dl.yxhgq7
title: Occurrence Download

description: A dataset containing 3126 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Hippocampus abdominalis"
 ]
}

 The dataset includes 3126 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062742-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9vh4p9
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "TaxonKey is Aechmea capixabae"
 ]
}

 The dataset includes 153 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062743-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/6mxqig
title: Replication Data for: Barriers to Entry: Decomposing the Gender Gap in Job Search in Urban Pakistan

description: This is the replication package for "Barriers to Entry: Decomposing the Gender Gap in Job Search in Urban Pakistan," accepted in 2025 by the Journal of Labor Economics.
DOI: 10.15468/dl.rt6mmn
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pelodiscus sinensis",
 "Country is Philippines",
 "HasCoordinate is true"
 ]
}

 The dataset includes 21 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062746-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nfh72t
title: Occurrence Download

description: A dataset containing 839 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Maldives",
 "Year is 2018",
 "InstitutionCode is iNaturalist"
 ]
}

 The dataset includes 839 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062745-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5vbmmj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pelodiscus sinensis",
 "Country is Slovenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062748-250920141307145/datasets/export for details.