cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.f3hqqs
title: Occurrence Download

description: A dataset listing the 12 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chrysotila P.L.Anand, 1937"
 ]
}

 The dataset's 12 records were derived from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018514-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.akp2np
title: Occurrence Download

description: A dataset containing 45861 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Plebejus argus (Linnaeus, 1758)",
 "Year 2000-2025"
 ]
}

 The dataset includes 45861 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018526-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14707966
title: Gadolinium Phantom MRI Raw Data Acquired with 3D Multi-Echo Cones Trajectory without Motion - Part 2/2

description: This repository together with Part 1/2 contains a gadolinium phantom dataset acquired with 3D multi-echo cones MRI without motion. For file I/O and reconstruction, please refer to https://github.com/MRI-Research/5dLiverMRI-MedIA.

There are two other datasets of the same phantom acquired:

- 3D multi-echo cones MRI with motion: Part 1/2, Part 2/2 

- 3D multi-echo Cartesian MRI without motion: Link

Details of the imaging parameters can be found from the following publications:

- https://pubmed.ncbi.nlm.nih.gov/37392413/

- https://doi.org/10.1016/j.media.2025.103532
DOI: 10.5281/zenodo.14707967
title: Gadolinium Phantom MRI Raw Data Acquired with 3D Multi-Echo Cones Trajectory without Motion - Part 2/2

description: This repository together with Part 1/2 contains a gadolinium phantom dataset acquired with 3D multi-echo cones MRI without motion. For file I/O and reconstruction, please refer to https://github.com/MRI-Research/5dLiverMRI-MedIA.

There are two other datasets of the same phantom acquired:

- 3D multi-echo cones MRI with motion: Part 1/2, Part 2/2 

- 3D multi-echo Cartesian MRI without motion: Link

Details of the imaging parameters can be found from the following publications:

- https://pubmed.ncbi.nlm.nih.gov/37392413/

- https://doi.org/10.1016/j.media.2025.103532
DOI: 10.15468/dl.bhcs5d
title: Occurrence Download

description: A dataset containing 15807 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tracking speartooth sharks (Glyphis glyphis) and bull sharks (Carcharhinus leucas), Wenlock and Ducie rivers, Cape York, Australia (2014-2018)"
 ]
}

 The dataset includes 15807 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018528-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cm68u7
title: Occurrence Download

description: A dataset containing 484 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hypomedon debilicornis (Wollaston, 1857)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 484 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018527-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18150/8r49bt
title: Nucleotide sugars RP-HPLC separation

description: RP-HPLC separation of nucleotide sugars extracted from HEK293T cells wild-type (WT); deficient in TSTA3 protein (TSTA3KO); deficient in GMDS (GMDSKO) protein; deficient in FCSK (FCSKKO) protein treated (FUC) and not treated with fucose; deficient in TSTA3 protein with overexpression of FPGT (TSTA3KO + FPGT) and/or FCSK protein (TSTA3KO + FCSK); deficient in GMDS protein with overexpression of FPGT (GMDSKO + FPGT) and/or FCSK protein (GMDSKO + FCSKKO)
DOI: 10.15468/dl.jqhcny
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus alpescens Trel."
 ]
}

 The dataset includes 10 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018530-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wbfxyr
title: Occurrence Download

description: A dataset containing 166809 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Fragaria vesca L.",
 "Year 2010-2020"
 ]
}

 The dataset includes 166809 records from 1504 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018504-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14691161
title: Gadolinium Phantom MRI Raw Data Acquired with 3D Multi-Echo Cones Trajectory with Motion - Part 2/2

description: This repository together with Part 1/2 contains a gadolinium phantom dataset acquired with 3D multi-echo cones MRI with motion. For file I/O and reconstruction, please refer to https://github.com/MRI-Research/5dLiverMRI-MedIA.

There are two other datasets of the same phantom acquired:

- 3D multi-echo cones MRI without motion: Part 1/2, Part 2/2 

- 3D multi-echo Cartesian MRI without motion: Link

Details of the imaging parameters can be found from the following publications:

- https://pubmed.ncbi.nlm.nih.gov/37392413/

- https://doi.org/10.1016/j.media.2025.103532
DOI: 10.5281/zenodo.14691162
title: Gadolinium Phantom MRI Raw Data Acquired with 3D Multi-Echo Cones Trajectory with Motion - Part 2/2

description: This repository together with Part 1/2 contains a gadolinium phantom dataset acquired with 3D multi-echo cones MRI with motion. For file I/O and reconstruction, please refer to https://github.com/MRI-Research/5dLiverMRI-MedIA.

There are two other datasets of the same phantom acquired:

- 3D multi-echo cones MRI without motion: Part 1/2, Part 2/2 

- 3D multi-echo Cartesian MRI without motion: Link

Details of the imaging parameters can be found from the following publications:

- https://pubmed.ncbi.nlm.nih.gov/37392413/

- https://doi.org/10.1016/j.media.2025.103532
DOI: 10.18150/1bzxhu
title: Supplementary Data for: A transcription factor from the cryptic Escherichia coli Rac prophage controls both phage and host operons

description: Bioinformatics results related to the article "A transcription factor from the cryptic Escherichia coli Rac prophage controls both phage and host operons"For details see README.txt file inside the package.Citation: Ewa Wons, Katarzyna Gucwa, Natalia Lewandowska, Aleksandra Wisniewska, Lukasz Pawel Kozlowski, Iwona Mruk, A transcription factor from the cryptic Escherichia coli Rac prophage controls both phage and host operons, Nucleic Acids Research, Volume 53, Issue 5, 24 March 2025, gkaf113, https://doi.org/10.1093/nar/gkaf113
DOI: 10.15468/dl.ebe2qe
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus apiculata Djav.-Khoie"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018531-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/9y4e-wt32
title: Picmus

description: Plane-Wave imaging enables very high frame rates, up to several thousand frames per second. Unfortunately the lack of transmit focusing leads to reduced image quality, both in terms of resolution and contrast. Recently, numerous beamforming techniques have been proposed to compensate for this effect, but comparing the different methods is difficult due to the lack of appropriate tools. PICMUS, the Plane-Wave Imaging Challenge in Medical Ultrasound aims to provide these tools. This paper describes the PICMUS challenge, its motivation, implementation, and metrics.
DOI: 10.15468/dl.zsspgr
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus aurea Wierzb."
 ]
}

 The dataset includes 37 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018532-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ufscjc
title: Occurrence Download

description: A dataset containing 1081 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "OccurrenceStatus is Present",
 "TaxonKey is Puma concolor (Linnaeus, 1771)"
 ]
}

 The dataset includes 1081 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034115-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ye7j7x
title: Occurrence Download

description: A dataset containing 1422 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Month is one of (July, August)",
 "TaxonKey is Pitta moluccensis (Statius Muller, 1776)"
 ]
}

 The dataset includes 1422 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034116-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13331808
title: Heterodyne analysis of high-order partial waves in attosecond photoionization of Helium

description: The data supports the mainfigures in the manuscript "Heterodyne analysis of high-order partial waves in attosecond photoinization of Helium".
DOI: 10.5281/zenodo.13331809
title: Heterodyne analysis of high-order partial waves in attosecond photoionization of Helium

description: The data supports the mainfigures in the manuscript "Heterodyne analysis of high-order partial waves in attosecond photoinization of Helium".
DOI: 10.6084/m9.figshare.c.3608465_d7
title: Additional file 2: of Importins promote high-frequency NF-κB oscillations increasing information channel capacity

description: Computational model in BNGL. (BNGL 14 kb)
DOI: 10.6084/m9.figshare.c.3608495_d1
title: MOESM1 of Adrenal suppression in children treated with swallowed fluticasone and oral viscous budesonide for eosinophilic esophagitis

description: Additional file 1. Eosinophilic esophagitis adrenal suppression dataset.
DOI: 10.6084/m9.figshare.c.3608492_d2
title: Additional file 8: Table S8. of Mitochondrial genome sequences from wild and cultivated barley (Hordeum vulgare)

description: BLASTN analysis between the mitochondrial sequences of H602 and pseudomolecules of seven chromosomes and un-anchored scaffolds and contigs published in Ensembl Plants Hordeum vulgare (Hordeum_vulgare.ASM32608v1.31.dna_sm.genome.fa.gz). (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3608492_d3
title: Additional file 2: Table S2. of Mitochondrial genome sequences from wild and cultivated barley (Hordeum vulgare)

description: Primer pairs used for SNP analysis. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3608501_d1
title: Additional file 2: Table S2. of Quality of life effects of androgen deprivation therapy in a prostate cancer cohort in New Zealand: can we minimize effects using a stratification based on the aldo-keto reductase family 1, member C3 rs12529 gene polymorphism?

description: Data used in the analysis -Karunasinghe et al. BMC Urology 2016. All parameters used in the analysis except for age data (that has been removed for patient anonymity). (XLSX 52 kb)
DOI: 10.6084/m9.figshare.c.3608504_d1
title: Additional file 3: of Systems-level effects of ectopic galectin-7 reconstitution in cervical cancer and its microenvironment

description: Supplementary File 2. Significant and total proteins identified by SILAC in HeLa Gal-7+ and SiHa Gal-7+ CxCa cells. (XLSX 9105 kb)
DOI: 10.6084/m9.figshare.c.3608492_d4
title: Additional file 3: Table S3. of Mitochondrial genome sequences from wild and cultivated barley (Hordeum vulgare)

description: a Contigs of the mitochondrial genome of H602 generated by 454 sequencing, b Contigs of the mitochondrial genome of Haruna Nijo generated by 454 sequencing. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3608492_d5
title: Additional file 9: Table S9. of Mitochondrial genome sequences from wild and cultivated barley (Hordeum vulgare)

description: SNP genotypes of 5 wild and 247 cultivated barleys. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3608492_d10
title: Additional file 7: Table S7. of Mitochondrial genome sequences from wild and cultivated barley (Hordeum vulgare)

description: Syntenic region between the mitochondrial genome and chloroplast genome in barley. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3608528_d2
title: Additional file 2: of Navigating barriers: two-year follow up on recommendations to improve the use of maternal health guidelines in Kosovo

description: Workshop summary document. (ZIP 42 kb)
DOI: 10.6084/m9.figshare.c.3608513_d7
title: Additional file 9: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Nucleic acid sequences of retroCalimero, retroSaturnin and retroTux. The consensus sequences of these three LTR elements were supplied. (ODT 37 kb)
DOI: 10.6084/m9.figshare.c.3608537_d1
title: Additional file 1: Figure S1. of Relationships between mitochondrial content and bioenergetics with obesity, body composition and fat distribution in healthy older adults

description: Regression analysis comparing Vastus lateralis mitochondrial content, measured as citrate synthase enzyme activity with percent fat and subcutaneous thigh fat mass. (ODP 37 kb)
DOI: 10.6084/m9.figshare.c.3608513_d8
title: Additional file 4: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Diagram showing programs in both REPET TEdenovo and TEannot components. The programs below were run either successively or in parallel from top to bottom as indicated by the red triangles. The three programs in TEannot with blue or pink backgrounds were removed from our analyses and the outputs of the program in yellow were verified by hand. Note: RepeatMasker is part of the TEannot component. (ODT 73 kb)
DOI: 10.6084/m9.figshare.c.3612509_d11
title: Additional file 5: Figure S4. of Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies

description: A. Area under the curve distributions for additive spike-ins in dataset A1. Violin plot of distributions of area under the receiver operating characteristic curve (AUC) for spiked vs non-spiked p values from differential relative abundance (DA) tests. AUC distributions from 150 iterations for each combination of spike-in magnitude and case proportion (vertical panels) in dataset A1, analyzed with all differential relative abundance methods (horizontal panels). Black dots represent medians in each distribution. B. Area under the curve distributions for additive spike-ins in dataset A2. Violin plot of distributions of area under the receiver operating characteristic curve (AUC) for spiked vs non-spiked p values from differential relative abundance (DA) tests. AUC distributions from 150 iterations for each combination of spike-in magnitude and case proportion (vertical panels) in dataset A2, analyzed with all differential relative abundance methods (horizontal panels). Black dots represent medians in each distribution. C. Area under the curve distributions for additive spike-ins in dataset A3. Violin plot of distributions of area under the receiver operating characteristic curve (AUC) for spiked vs non-spiked p values from differential relative abundance (DA) tests. AUC distributions from 150 iterations for each combination of spike-in magnitude and case proportion (vertical panels) in dataset A3, analyzed with all differential relative abundance methods (horizontal panels). Black dots represent medians in each distribution. (ZIP 2183 kb)
DOI: 10.6084/m9.figshare.c.3612509_d12
title: Additional file 4: Figure S3. of Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies

description: A. Area under the curve distributions for multiplicative spike-ins in dataset A1. Violin plot of distributions of area under the receiver operating characteristic curve (AUC) for spiked vs non-spiked p values from differential relative abundance (DA) tests. AUC distributions from 150 iterations for each combination of spike-in magnitude and case proportion (vertical panels) in dataset A1, analyzed with all differential relative abundance methods (horizontal panels). Black dots represent medians in each distribution. B. Area under the curve distributions for multiplicative spike-ins in dataset A2. Violin plot of distributions of area under the receiver operating characteristic curve (AUC) for spiked vs non-spiked p values from differential relative abundance (DA) tests. AUC distributions from 150 iterations for each combination of spike-in magnitude and case proportion (vertical panels) in dataset A2, analyzed with all differential relative abundance methods (horizontal panels). Black dots represent medians in each distribution. C. Area under the curve distributions for multiplicative spike-ins in dataset A3. Violin plot of distributions of area under the receiver operating characteristic curve (AUC) for spiked vs non-spiked p values from differential relative abundance (DA) tests. AUC distributions from 150 iterations for each combination of spike-in magnitude and case proportion (vertical panels) in dataset A3, analyzed with all differential relative abundance methods (horizontal panels). Black dots represent medians in each distribution. (ZIP 2685 kb)
DOI: 10.6084/m9.figshare.c.3612566_d6
title: Additional file 3: Table S3. of Epigenetic modification with trichostatin A does not correct specific errors of somatic cell nuclear transfer at the transcriptomic level; highlighting the non-random nature of oocyte-mediated reprogramming errors

description: TSA-NT differentially regulated genes. Breakdown of genes differentially up and downregulated with â Ľ1.5 fold change in TSA-NT compared to in vitro fertilized embryos. Red and green colors represent up and downregulation, respectively. (XLS 314Â kb)
DOI: 10.6084/m9.figshare.c.3612566_d7
title: Additional file 6: Table S5. of Epigenetic modification with trichostatin A does not correct specific errors of somatic cell nuclear transfer at the transcriptomic level; highlighting the non-random nature of oocyte-mediated reprogramming errors

description: GO terms emerged from CTR-NT blastocyst. Gene ontology terms emerged from the differentially regulated genes of CTR-NT blastocysts compared to IVF (FDR 1.5, P ≤ 0.05, FC ≥1.5). (XLS 39 kb)
DOI: 10.6084/m9.figshare.c.3612575_d7
title: Additional file 2: Table S1. of Deciphering the transcriptional regulation and spatiotemporal distribution of immunity response in barley to Pyrenophora graminea fungal invasion

description: Homologies of sequences of DD fragments to sequences in the databases (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3612566_d9
title: Additional file 7: Table S6. of Epigenetic modification with trichostatin A does not correct specific errors of somatic cell nuclear transfer at the transcriptomic level; highlighting the non-random nature of oocyte-mediated reprogramming errors

description: GO terms emerged from TSA-NT blastocyst. Gene ontology terms emerged from the differentially regulated genes of TSA-NT blastocysts compared to IVF (FDR 1.5, P ≤ 0.05, FC ≥1.5). (XLS 42 kb)
DOI: 10.6084/m9.figshare.c.3614885_d1
title: MOESM1 of Assessing methanotrophy and carbon fixation
            for biofuel production by Methanosarcina acetivorans

description: Additional file 1. iMAC868 metabolic reconstruction.
DOI: 10.6084/m9.figshare.c.3614900_d1
title: MOESM1 of Unravelling the patterns of host immune responses in Plasmodium vivax malaria and dengue co-infection

description: Additional file 1. Distribution of cytokines and chemokines according to malaria, co-infection and dengue groups.
DOI: 10.6084/m9.figshare.c.3614906_d1
title: Additional file 1: of Altered cellular localization and hemichannel activities of KID syndrome associated connexin26 I30N and D50Y mutations

description: Raw data for the following experiments: Cx26-golgin97 colocalization, neurobiotin uptake assay under physiological condition, neurobiotin uptake assay without calcium and in the presence of carbenexolone (CBX) and intracellular calcium content experiments. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3614900_d2
title: MOESM2 of Unravelling the patterns of host immune responses in Plasmodium vivax malaria and dengue co-infection

description: Additional file 2. Correlation parameters between the immune biomarkers according to study groups.
DOI: 10.6084/m9.figshare.c.3614900_d3
title: MOESM3 of Unravelling the patterns of host immune responses in Plasmodium vivax malaria and dengue co-infection

description: Additional file 3. Correlation parameters between the immune biomarkers and laboratory measures or parasitaemia in the study groups.
DOI: 10.6084/m9.figshare.c.3614951_d4
title: MOESM6 of Understanding the molecular aspects of oriental obesity pattern differentiation using DNA microarray

description: Additional file 6: TableÂ S5. Expression levels of endogenous PTGS2 gene in 15 randomly selected subjects (Random) or 15 volunteers representing LDS pattern (LDS) as measured by quantitative RT-PCR.
DOI: 10.6084/m9.figshare.c.3614945_d8
title: Additional file 4: of Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles

description: General statistics on the presence of InterPro accessions in the analyzed genomes. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3614960_d3
title: Additional file 1: of Complete genome sequences of Francisella noatunensis subsp. orientalis strains FNO12, FNO24 and FNO190: a fish pathogen with genomic clonal behavior

description: Alignment of proteins coding sequences with less than 99 % identity between the three sequenced genomes. (TXT 20 kb)
DOI: 10.6084/m9.figshare.c.3614960_d4
title: Additional file 4: of Complete genome sequences of Francisella noatunensis subsp. orientalis strains FNO12, FNO24 and FNO190: a fish pathogen with genomic clonal behavior

description: COG functional categories found of each species-specific CDS of Francisella noatunensis subsp. orientalis. (TXT 16 kb)
DOI: 10.6084/m9.figshare.c.3616412_d3
title: MOESM1 of Temozolomide promotes genomic and phenotypic changes in glioblastoma cells

description: Additional file 1: Table S1. A list of CCAs/NCCAs and their copy number variation in U251, U251TMZ1 and U251TMZ1 cells.
DOI: 10.6084/m9.figshare.c.3616412_d4
title: MOESM2 of Temozolomide promotes genomic and phenotypic changes in glioblastoma cells

description: Additional file 2: Table S2. Table S2. Detailed description of copy number alterations (CNAs) in U251, U251TMZ1 and U251TMZ1 cells.
DOI: 10.6084/m9.figshare.c.3616367_d12
title: MOESM5 of Infiltration-RNAseq: transcriptome profiling of Agrobacterium-mediated infiltration of transcription factors to discover gene function and expression networks in plants

description: Additional file 7: Table S5. Â Differentially expressed Nicotiana benthamiana transcripts between Buffer and Agrobacterium infiltrated replicate sets.