cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14246302
title: Single-Molecule Localization Microscopy (SMLM) 2D Digits 123 and TOL letters and grid dataset processed for machine-learning

description: The digits and letters dataset was adapted from Huijben, Teun Adrianus Petrus Maria; Heydarian, Hamidreza; Rieger, B. (Bernd); Stallinga, S. (Sjoerd); Jungmann, R. (Ralf) et. al. (2021): Single-Molecule Localization Microscopy (SMLM) 2D Digits 123 and TOL letters datasets. Version 1. 4TU.ResearchData. dataset. https://doi.org/10.4121/14074091.v1 under CC BY-NC 4.0





clusternet_hcf.tar.gz contains the files for ClusterNet-HCF

clusternet_lcf.tar.gz contains the files for ClusterNet-LCF



The salient folders in these are:



config - configuration files 

preprocessed - train and test files in Apache .parquet format - these files could be used to re-train a different network using the pipeline

models - contains the trained model

output - results

processed - train, validation and test files in Pytorch Geometric format

scripts


Note:



the test files are the RESERVED TEST SET FILES

the train and validation set together constitute the data that was used in cross-validation

the clusters contain the handcrafted features.


To reproduce/visualise results follow the instructions at https://github.com/oubino/locpix_points/
DOI: 10.5281/zenodo.14246303
title: Single-Molecule Localization Microscopy (SMLM) 2D Digits 123 and TOL letters and grid dataset processed for machine-learning

description: The digits and letters dataset was adapted from Huijben, Teun Adrianus Petrus Maria; Heydarian, Hamidreza; Rieger, B. (Bernd); Stallinga, S. (Sjoerd); Jungmann, R. (Ralf) et. al. (2021): Single-Molecule Localization Microscopy (SMLM) 2D Digits 123 and TOL letters datasets. Version 1. 4TU.ResearchData. dataset. https://doi.org/10.4121/14074091.v1 under CC BY-NC 4.0





clusternet_hcf.tar.gz contains the files for ClusterNet-HCF

clusternet_lcf.tar.gz contains the files for ClusterNet-LCF



The salient folders in these are:



config - configuration files 

preprocessed - train and test files in Apache .parquet format - these files could be used to re-train a different network using the pipeline

models - contains the trained model

output - results

processed - train, validation and test files in Pytorch Geometric format

scripts


Note:



the test files are the RESERVED TEST SET FILES

the train and validation set together constitute the data that was used in cross-validation

the clusters contain the handcrafted features.


To reproduce/visualise results follow the instructions at https://github.com/oubino/locpix_points/
DOI: 10.15468/dl.eeuxpq
title: Occurrence Download

description: A dataset containing 232 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gentianella divisa (Kirk) Glenny"
 ]
}

 The dataset includes 232 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025068-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4zwryv
title: Occurrence Download

description: A dataset containing 2822955 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gruidae"
 ]
}

 The dataset includes 2822955 records from 453 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005274-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pznnqc
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-121.078148021404 35.19884836763316,-120.55135736950675 35.41789111344289,-121.09350279204982 36.06935784625679,-121.70655301983793 36.35313297069122,-121.96372702697494 36.0983878535835,-121.078148021404 35.19884836763316))",
 "HasCoordinate is true",
 "TaxonKey is Arctostaphylos cruzensis Roof",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 71 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025069-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wv2bcn
title: Occurrence Download

description: A dataset containing 8474604 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bird tracking - GPS tracking of Lesser Black-backed Gulls and Herring Gulls breeding at the southern North Sea coast"
 ]
}

 The dataset includes 8474604 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0211309-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ni3rxi
title: Occurrence Download

description: A dataset containing 19198 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is FBIP:IZIKO-UCT:Historical Survey (1930-1980)"
 ]
}

 The dataset includes 19198 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025069-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jdaq23
title: Occurrence Download

description: A dataset containing 22154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bellis perennis L.",
 "Year 1976-1980"
 ]
}

 The dataset includes 22154 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0206030-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.95y2re
title: Occurrence Download

description: A dataset containing 26599 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Searsia F.A.Barkley"
 ]
}

 The dataset includes 26599 records from 192 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151409-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bkcdjn
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtophyllicus chlorum Hebard, 1908"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025070-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.znqyet
title: Occurrence Download

description: A dataset containing 1960 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alpinia zerumbet (Pers.) B.L.Burtt & R.M.Sm.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1960 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0208090-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zvka40
title: Occurrence Download

description: A dataset containing 739 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chuquiraga jussieui J.F.Gmel."
 ]
}

 The dataset includes 739 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025070-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bq3gd6
title: Occurrence Download

description: A dataset containing 60457 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sagittaria sagittifolia L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 60457 records from 286 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0208091-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.97p9ws
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Lemur catta Linnaeus, 1758",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 91 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025071-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j7gvkq
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oxalis triangularis subsp. triangularis",
 "Year 1970-2021"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0209709-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lg7an4
title: Occurrence Download

description: A dataset containing 2433 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Year 1960-2018",
 "HasCoordinate is true",
 "TaxonKey is Quercus rubra L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2433 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025072-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdx4de
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Pomacea canaliculata (Lamarck, 1822)"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049024-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tv1lol
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orconectes indianensis (Hay, 1896)"
 ]
}

 The dataset includes 36 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040295-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lkbttm
title: Occurrence Download

description: A dataset containing 2109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Year 1600-2018",
 "HasCoordinate is true",
 "TaxonKey is Pinus ponderosa Douglas ex C.Lawson",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2109 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025073-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3hhufk
title: Occurrence Download

description: A dataset containing 8055 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 {
 "or" : [
 "Continent is North America",
 "Continent is South America"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Falco sparverius Linnaeus, 1758"
 ]
}

 The dataset includes 8055 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0212450-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uc5zyu
title: Occurrence Download

description: A dataset containing 50016 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Specimen, Material sample, Human Observation, Observation)",
 "ClassKey is Amphibia",
 "Country is Ecuador",
 "Year is greater than or equal to 1960",
 "Month is greater than or equal to January",
 "HasCoordinate is true"
 ]
}

 The dataset includes 50016 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025075-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xq22ww
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Benin",
 "Country is Burkina Faso",
 "Country is Cameroon",
 "Country is Gambia",
 "Country is Ghana",
 "Country is Guinea",
 "Country is Guinea-Bissau",
 "Country is Equatorial Guinea",
 "Country is Côte d’Ivoire",
 "Country is Liberia",
 "Country is Mali",
 "Country is Mauritania",
 "Country is Niger",
 "Country is Nigeria",
 "Country is Saint Helena, Ascension and Tristan da Cunha",
 "Country is Senegal",
 "Country is Sierra Leone",
 "Country is Sao Tome and Principe",
 "Country is Togo",
 "Country is Cabo Verde"
 ]
 },
 "TaxonKey is Vahadenia laurentii (De Wild.) Stapf"
 ]
}

 The dataset includes 33 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0202832-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.snertx
title: Occurrence Download

description: A dataset containing 1207 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tagetes patula L.",
 "Year 1970-2021"
 ]
}

 The dataset includes 1207 records from 132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0208092-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.obvjhw
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eutamias minimus (Bachman, 1839)"
 ]
}

 The dataset includes 158 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025076-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sujmgs
title: Occurrence Download

description: A dataset containing 246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhinella marina (Linnaeus, 1758)",
 "Year 1965-2021"
 ]
}

 The dataset includes 246 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0206031-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w8c9n2
title: Occurrence Download

description: A dataset containing 19258 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tamias minimus Bachman, 1839"
 ]
}

 The dataset includes 19258 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025077-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.24435/materialscloud:d8-j4
title: Effect of the OH functionalization on the catalytic activity of single-atom catalyst

description: The existence of the hydroxyl ligand on a single- atom catalyst embedded in graphene, especially Fe(OH)−N4−C is suggested to improve the oxygen reduction reaction (ORR) from the pristine Fe−N4−C. However, the theoretical electrocatalytic activity of the ORR process is shown to be highly dependent on the electrolyte solution and the applied electrode potential. Herein, we performed the constant-potential simulation and microkinetic modeling to investigate the mechanism of ORR on well studied Fe(OH)−N4−C and Co(OH)−N4−C catalysts and compared to the pristine ones, using density functional theory (DFT) calculation combined with the effective screening medium method and the reference interaction site model (ESM-RISM). It was found that the Fe(OH)−N4−C and Co(OH)−N4−C have comparable ORR activities to Fe−N4−C and Co−N4−C, and the calculated limiting potentials and half-wave potentials agree with the experimental values, in contrast to the results obtained using the constant-charge method (i.e., under the neutral condition) regardless of consideration of the solvation effect.
DOI: 10.24435/materialscloud:jh-5m
title: Effect of the OH functionalization on the catalytic activity of single-atom catalyst

description: The existence of the hydroxyl ligand on a single- atom catalyst embedded in graphene, especially Fe(OH)−N4−C is suggested to improve the oxygen reduction reaction (ORR) from the pristine Fe−N4−C. However, the theoretical electrocatalytic activity of the ORR process is shown to be highly dependent on the electrolyte solution and the applied electrode potential. Herein, we performed the constant-potential simulation and microkinetic modeling to investigate the mechanism of ORR on well studied Fe(OH)−N4−C and Co(OH)−N4−C catalysts and compared to the pristine ones, using density functional theory (DFT) calculation combined with the effective screening medium method and the reference interaction site model (ESM-RISM). It was found that the Fe(OH)−N4−C and Co(OH)−N4−C have comparable ORR activities to Fe−N4−C and Co−N4−C, and the calculated limiting potentials and half-wave potentials agree with the experimental values, in contrast to the results obtained using the constant-charge method (i.e., under the neutral condition) regardless of consideration of the solvation effect.
DOI: 10.3535/laj-shs-5z2
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lhq-8mh-bb5
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xtt-9qn-nef
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dg4-s00-hf0
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p4g-nx6-pxm
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h35-w5r-ktl
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jxa-k8z-qes
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-zsh-usru
title: PAN-00123437 - scabbard band with suspension rings (Roman sword, type Mainz and Pompeii)

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00123437&lt;/p&gt;
description: Modified: 2023-05-11T16:40:10+02:00
DOI: 10.3535/08s-a6q-wcg
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mmy-vcz-tk3
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/at8-am8-y9v
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l45-vg9-8qy
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-zsh-w5q5
title: PAN-00044604 - leaf-shaped spear-/lance head (Roman)

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00044604&lt;/p&gt;
description: Modified: 2019-10-11T16:44:41+02:00
DOI: 10.3535/g7h-62e-lh1
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kxa-fj0-8kc
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qtk-6e4-q2s
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-zsh-wa9t
title: PAN-00004679 - inlaid bow brooch variant A4

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00004679&lt;/p&gt;
description: Modified: 2019-04-25T10:34:32+02:00
DOI: 10.3535/src-7rv-71m
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/27n-9ne-xrr
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/db8-v97-283
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-zsh-wfbf
title: PAN-00132320 - copper alloy nail with a hemispherical head

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00132320&lt;/p&gt;
description: Modified: 2023-05-24T16:29:21+02:00
DOI: 10.3535/lsw-j4j-bpv
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vgn-0zz-d6n
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l6d-xnr-e4z
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rvg-k16-8hy
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-zsh-x3c5
title: Archeologische begeleiding met beperkte verstoring voor de rioolvervanging aan de Scheepmakerij te Delft

description: &lt;p&gt;Door ingenieursbureau Oranjewoud B.V. is een archeologische begeleiding uitgevoerd voor rioleringswerkzaamheden aan de Scheepmakerij te Delft. &lt;br&gt;Tijdens de begeleidingswerkzaamheden zijn zeven spoornummers uitgegeven. Vijf hiervan betreffen archeologische muurresten, de andere twee zijn paalkuilen. Tijdens de archeologische begeleiding zijn in totaal acht vondstnummers uitgedeeld. Hieronder zijn 169 fragmenten geregistreerd met een gezamenlijk gewicht van 14,8 kilo. Deze vondsten kunnen worden onderverdeeld in de categorieën glas, keramiek, bouwkeramiek, ijzer, dierlijk bot en leisteen.&lt;/p&gt;&lt;p&gt;In de zone waar het riool op een nieuwe locatie is gelegd, is alleen een kademuur aangetroffen, die waarschijnlijk een 19e eeuwse voorloper van de huidige kademuur betreft. In de zone waar het bestaande riool is verwijderd zijn slechts fragmenten muurwerk aangetroffen.&lt;/p&gt;