cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28467266.v1
title: Ribfrac-train-3

description: The RibFrac dataset, publicly available from the RibFrac Challenge: Rib Fracture Detection and Classification, organized by the International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), was chosen for inclusion in this study.The data can be accessed at https://ribfrac.grand-challenge.org/dataset/.The dataset is composed of 3D rib CT images in the format of the Neuroimaging Informatics Technology Initiative (NIFTI), and annotated by multiple radiologists with varying years of experience in chest CT interpretation using the human-in-the-loop labeling program to ensure high-quality annotation.
DOI: 10.3535/jt4-pkq-v45
title: Antimony

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n5l-elb-hkb
title: Chondrodite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ady-t3r-yzy
title: Antimony

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jrx-8ls-4zr
title: Chondrodite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14967441.v1
title: Table S5.xlsx

description: Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways enrichment analysis of differentially expressed genes.
DOI: 10.6084/m9.figshare.17163584.v4
title: A short-term prospective study to evaluate the clinical performance of endosseous zirconia implants

description: Endosseous zirconia implants have been established as an alternative to conventional titanium implants, especially in the aesthetic zone. This pilot study aimed to evaluate the outcome of rehabilitation with zirconia implants, in a subset of the Indian population, involving varying clinical scenarios.
DOI: 10.6084/m9.figshare.25814920.v1
title: All the protein sequencing data of Microhyla fissipes.fastaProtein sequencing data of Microhyla fissipes

description: All the protein sequencing data of <i>Microhyla fissipes</i> : FASTA FILE<br>
DOI: 10.3535/88s-ylj-smz
title: Chondrodite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tbj-mdj-6yr
title: Antimony

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.15176907.v3
title: Project: Patient survival outcomes based on gene expression

description: Clinical data, EGFR expression data (in FPKM). Dataset to correlate gene expression with survival time
DOI: 10.6084/m9.figshare.27187983.v3
title: <b>Thermal acclimation and its reversal in early life stages of brook trout</b>

description: In juvenile and adult fishes, the initiation, completion, and reversal of acclimation have been studied but there are few data on the dynamics of acclimation in early life stages. We examined how chronic warming during incubation altered thermal tolerance in early life stages of brook trout (<i>Salvelinus fontinalis</i>) to quantify the scope and duration of thermal acclimation and carryover effects during early development. We assessed how quickly the acclimation of upper thermal tolerance (CT<sub>max</sub>) was lost once hatched larvae were moved to common conditions. In embryos, and four weeks after hatch, fish in warmer treatments had a positive acclimation response (higher CT<sub>max</sub>). Eight weeks after hatch, acclimation was completely reversed, whereby fry that had been reared in ambient (cooler) conditions had higher thermal tolerance than those from warm treatments. Early life stages of brook trout can acclimate their thermal tolerance throughout development but acclimation to warmer temperatures can have a cost in the form of lower body condition.
DOI: 10.6084/m9.figshare.5695543.v1
title: Benchmark WGBS data (sample 3 in 2 versus 2 sample comparison)

description: Benchmark WGBS data (sample 3 in 2 versus 2 sample comparison)<br><br>This file contains simulated benchmark WGBS data for 1 sample from a 2 vs 2 comparison saved as a `.txt.gz` (compressed text file). The tab-delimited text file contains four columns: chromosome, position, number of methylated reads, and total number of reads coverage.<br><br>This benchmark data was created to mimic the properties of real WGBS data in order to evaluate the method dmrseq (described in the preprint at https://doi.org/10.1101/183210). This was done by splitting a set of biological replicates (controls) into two artificial groups and adding methylation differences to randomly selected regions. Differences are added between the first half of samples and the second half of samples. More methodological details and a script to reproduce the generation of this data file is available at the companion repository: https://github.com/kdkorthauer/dmrseqPaper.
DOI: 10.3535/566-11v-v53
title: Chondrodite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/en4-1b5-qe8
title: Antimony

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13218434.v1
title: Experiment 2: short-term dynamics of the response to thymol dietary supplementation and cyclic heat stress in female quail (Coturnix japonica)

description: Data corresponding to time series on body temperature, respiratory rate, environmental (room) temperature, environmental (room) humidity, tonic immobility, behavior, body weight, feed intake, weight of droppings and egg laying are presented as raw data in 10 excel files. <br><br>The headers of the columns represent the variable analyzed for each animal (rows). The first 6 columns prior to variable records correspond to animal identification, treatment group and sampling points. In the first column the animal identification number is stated, and in the second one the cage identification number in which two females were allocated is indicated. In the third and fourth columns the diet supplied (BASAL: basal diet; THY: basal diet supplemented with 6.25 g of thymol/kg of feed) and environmental temperature (NHS: standard environmental temperature of 23 °C; HS: increased environmental temperature of 34 °C between 8 h to 17h) to which females were subjected are stated, respectively. The fifth column indicates the sampling day (-7, -6: seven and six days before experimental treatment began; 0: the day experimental treatment began; 1, 3, 4, 7, 8: one, three, four, seven and eight days after experimental treatment began) and the sixth the hour of sampling within a given day (from 8-19h depending on the variable). Table Fernandez et al. 2020 Puntual Event Behavior has a seventh column before variables evaluated that indicates the time within the five minute sampling in which the behavior was recorded (i.e. sampling points within a 5 minute period).
DOI: 10.3535/2ek-zf4-npp
title: Antimony

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/x0m-45p-akk
title: Antimony

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28418345.v1
title: Supplementary Materials.rar

description: Supplementary data
DOI: 10.3535/3sm-xl3-jgm
title: Antimony

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bwn-223-9dr
title: Chondrodite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.4121/uuid:861d8a8e-bea7-4b11-8bb2-8d8e7cc772ab
title: MaryGold 7 ecoli simulated metagenome assembly (AMOS bank)

description: A shotgun dataset was simulated with the 454sim v1.04 package (Lysholm et al., 2011) using default settings from the genomes of seven E. coli strains, to illustrate the effect on metagenome assembly of multiple closely related genomes. The strains were ABU83972 gi|386637352|ref|NC_017631.1|; BL21_gold gi|253771435|ref|NC_012947.1|; CFT073 gi|26245917|ref|NC_004431.1|; K12_DH10B gi|170079663|ref|NC_010473.1|; O104_H4 gi|410480139|ref|NC_018650.1|; O26_H11 gi|260853213|ref|NC_013361.1| SE11 gi|209917191|ref|NC_011415.1|
DOI: 10.6084/m9.figshare.27612136.v1
title: <i>Romaleodelphis pollerspoecki</i>, gen. et sp. nov., an archaic dolphin from the Central Paratethys (Early Miocene, Austria)

description: A new long-snouted homodont odontocete fossil from the Lower Miocene of Austria (ca. 22.5–22.0 Ma) is formally described and interpreted based on external skull characteristics supplemented by CT and µCT data. The specimen was found in deposits from the Central Paratethys and includes an incomplete and fragmented cranium and mandible as well as ear bones. It differs markedly from previously identified long-snouted archaic dolphins with single-rooted, homodont dentition, and thus is suggestive of a new taxon, for which the name <i>Romaleodelphis pollerspoecki</i> proposed. The geological context of <i>R. pollerspoecki</i> hints at a neritic habitat in close vicinity to estuarine environments. <i>Romaleodelphis pollerspoecki</i> shares key features with certain members of the so-called ‘<i>Chilcacetus</i> clade’ such as the widening of the premaxillae at the rostrum base and the absence of a deep lateral groove along the rostrum; however, a phylogenetic analysis reconstructs <i>R. pollerspoecki</i> in a polytomy with members of this ‘clade’ and a larger clade including many other taxa. To better understand the phylogenetic relationships of these taxa, comprehensive reexamination of <i>Argryocetus</i> and <i>Macrodelphinus</i> will be necessary. Measurements obtained through µCT-based internal anatomical reconstruction of the bony labyrinth indicate that <i>R. pollerspoecki</i> had the ability to hear specialized high-frequency signals similar to modern narrow-band high-frequency (NBHF) specialists. This work further identifies several extinct platanistoids as hearing within the NBHF spectrum, increasing the understanding of the diversity of ecological adaptations in early-diverging odontocetes and providing more examples of convergent evolution of this hearing type.
DOI: 10.3535/mn2-96v-p52
title: Antimony

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vmd-b8e-7h6
title: Antimony

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19851979.v1
title: Oxia Planum - Fluvial Sinuous Ridge shapefiles

description: Shapefiles showing the locations of mapped fluvial sinuous ridges and valley networks mapped in the Oxia Planum region of Mars.
DOI: 10.6084/m9.figshare.5341192.v1
title: SiFAP/TNG dataset of PSR J1023+0038

description: SiFAP/TNG observation fits file analyzed by Ambrosino, Papitto et al. (2017), "Optical pulsations from a transitional millisecond pulsar" (Nature Astronomy, https://www.nature.com/articles/s41550-017-0266-2, http://dx.doi.org/10.1038/s41550-017-0266-2)<br>The times of arrival of optical photons reported in these files were corrected for a known systematic drift of the SiFAP clock (see Methods section in Ambrosino, Papitto et al.), and converted to the barycenter of the Solar System using the position of the source (RA = 155.94869665833°, DEC = 0.6446793083°). Times are reported in seconds since the MJDREF keyword (reported in the header of each of the four fits files).<br><br>Please, address comments and requests to: alessandro.papitto@oa-roma.inaf.it
DOI: 10.6084/m9.figshare.c.3860470_d2.v1
title: Additional file 11: of Physical mapping of QTL for tuber yield, starch content and starch yield in tetraploid potato (Solanum tuberosum L.) by means of genome wide genotyping by sequencing and the 8.3 K SolCAP SNP array

description: Identity of genes detected in previous association studies using the candidate gene approach with genes detected in this study. (DOCX 18 kb)
DOI: 10.3535/fks-awk-tg2
title: Cornulites meidlai

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yqf-8j3-hv9
title: Chondrodite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20954554.v1
title: Fig4B Luciferase Data GlnRSLUC dadv1.csvDatasets for F1000 submission Circadian Clock Control of tRNA synthetases

description: Fig4B Luciferase Data GlnRSLUC dadv1
DOI: 10.6084/m9.figshare.24953646.v1
title: <b>Parental Autonomy Granting, Peer Attachment, and Problematic Internet Use among Chinese Adolescents: Moderating Effect of the School Climate</b>

description: <b>The first file is the T1 data(N = 926), the second file is the T2 data(N = 853), both of which were analyzed using the SPSS, and the third file is the results of the mediated moderation model analyzed by the Mplus.</b>
DOI: 10.6084/m9.figshare.28629620.v1
title: The original data and results of the R/S analysis in the manuscript

description: The dolomite reservoir of the Majiagou formation in the southeast of the Ordos Basin constitutes an important oil and gas reservoir. The development of fractures and vugs directly influences the reservoir's permeability and hydrocarbon storage capacity, making precise fracture-vug identification crucial for effective reservoir exploitation. Given the limitations of traditional fracture-vug recognition methods, the work adopted the R/S (Rescaled Range) analysis based on fractal theory and Newton's second-order difference method. The results are as follows. (1) The conventional logging curve was processed by R/S analysis. The concave interval reflected the developmental position of fractures and vugs. The greater the <i>H</i>, the more developed the fracture. Besides, corresponding identification standards were established. (2) Based on Newton's second-order difference, <i>K</i> was calculated. Rangeability was quantified in the concave interval of the curve to identify the natural fracture-vug development area. The accuracy and reliability of the method were verified by comparing the electro-imaging diagrams. (3) The differences and reasons for the response characteristics of <i>K</i> of different logging curves were analyzed to establish the identification plates of fractures and vugs development areas. This work provides a new method for the fracture-vug identification of Ordos Basin and other similar reservoirs, guiding the reservoir research and decision-making of oil and gas exploration and development.
DOI: 10.6084/m9.figshare.28660409.v1
title: Interview Data Coding of “Perspectives of Chinese Youth on Theatricalized Jiangzhou Drum Music”.docx

description: This document is a coding process of interviews with 10 young audience members in a study titled “Perspectives of Chinese Youth on Theatricalized Jiangzhou Drum Music”. The research team included LI KAI, CHOW OW WEI and RATNA ROSHIDA BINTI AB RAZAK from Universiti Putra Malaysia.
DOI: 10.3535/2sl-q1c-h16
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xfw-28b-qfs
title: Cornulites meidlai

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nwl-3ny-2lc
title: Craniida Waagen, 1885

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sev-a0c-wvv
title: †Dalmanella Hall & Clarke, 1892

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26789215.v1
title: Final AI and WF .xlsx

description: The escalating impact of climate change underscores the critical need for advanced and sustainable climate forecasting techniques. This review examines the current state and future prospects of leveraging Artificial Intelligence (AI) for climate forecasting, focusing on enhancing accuracy and identifying complex patterns in large datasets.
DOI: 10.3535/6zs-vky-grw
title: Melanoporella

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/c9t-5eh-a3j
title: Craniida Waagen, 1885

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.5335999.v2
title: APC data collected by Jisc 2013-2016

description: This data is collected by Jisc yearly. It has been cleaned using Open Refine. <br><br>The individual files are available on Figshare: https://figshare.com/search?q=:tag: article processing charges<br><br>For detailed information and analysis see: http://nbviewer.jupyter.org/github/kshamash/Article-processing-charges/blob/master/Autogenerate APC report.ipynb<br><br>The code and data are available on Github: https://github.com/kshamash/Article-processing-charges<br><br><br><br>
DOI: 10.6084/m9.figshare.987096.v1
title: A simple measure of the strength of convergent evolution

description: Datafiles from the empirical example using Anolis lizards.
DOI: 10.3535/x0v-pgm-t1k
title: Craniida Waagen, 1885

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zm7-64x-98x
title: Craniida Waagen, 1885

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/gvvb4rf98h
title: Decoding the Cross-Immune Pressure: Dengue’s Role in SARS-CoV-2 Evolution in Dengue Endemic Regions

description: In silico docking study was performed on mutated SARS-CoV-2 spike proteins with four dengue virus (DV) serotype 2 envelope antibodies (Abs) and one SARS-CoV-2 MAb using two FFT based global docking serves, HDOCK and Cluspro. The folder named "Docking structure files" contains HDOCK and CLUSPRO raw and analyzed files on docking simulations. Another folder contains excel sheets summarizing the docking analysis.

Wild-type SARS-CoV-2 spike protein FASTA sequence was collected from NCBI (MN908947.3). Mutations in the FASTA sequence were generated manually according to reported major mutations characteristic of each SARS-CoV-2 variant. Thereafter, I-TASSER server was applied to construct structural models of each mutated spike variant. One folder contains the ITASSER structure files.
DOI: 10.17632/t835gsrt66
title: SWCNT Dataset and CNN Models

description: Here are the dataset and machine learning models used for DNN training in the research paper:
Košmerl, V., Štajduhar, I.,  Čanađija, M.: "Predicting stress-strain behavior of carbon nanotubes using neural networks"
It contains basic data about 818 configurations and corresponding stress-strain values for all single-walled carbon nanotubes with diameters up to 4 nm, as well as CNN models for predicting stress-strain curves of SWCNTs. The dataset was obtained by averaging three sets of MD simulations in LAMMPS using modified AIREBO potential. 
The column names are: n - chiral index, m - chiral index, D - actual diameter, L - actual length, D0 - theoretical diameter, L0 - initial length, DL - elongation. Other columns names are self-explanatory. 
The TF-model predicts thermal fluctuations, while the S-model smooths them out. For all other details, please consult the above paper.
If you find this dataset and models useful, please cite the above paper. Full bibliographic data can be found at the listed DOI link.
DOI: 10.3535/413-fqf-8yz
title: Craniida Waagen, 1885

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5y6-3t3-4eq
title: Craniida Waagen, 1885

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1009688.v1
title: Gaussian Job Archive for C18H18

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.27226247.v1
title: Scalable Clustering: Large Scale Unsupervised Learning of Gaussian Mixture Models with Outliers

description: Clustering is a widely used technique with a long and rich history in a variety of areas. However, most existing algorithms do not scale well to large datasets, or are missing theoretical guarantees of convergence. This article introduces a provably robust clustering algorithm based on loss minimization that performs well on Gaussian mixture models with outliers. It provides theoretical guarantees that the algorithm obtains high accuracy with high probability under certain assumptions. Moreover, it can also be used as an initialization strategy for <i>k</i>-means clustering. Experiments on real-world large-scale datasets demonstrate the effectiveness of the algorithm when clustering a large number of clusters, and a <i>k</i>-means algorithm initialized by the algorithm outperforms many of the classic clustering methods in both speed and accuracy, while scaling well to large datasets such as ImageNet. Supplementary materials for this article are available online.
DOI: 10.3535/9kj-ws7-zms
title: Craniida Waagen, 1885

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/v3x-rxd-j3b
title: Craniida Waagen, 1885

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12776855.v1
title: Head_and_Torso_Simulator_Audio_2speakers_no_noise.zip

description: All recordings and source files for this cocktail party scenario configuration. For details, please see the publication "Multichannel acoustic source and image dataset for the cocktail party effect in hearing aid and implant users".
DOI: 10.3535/q3e-bkj-lww
title: Craniida Waagen, 1885

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/se3-baj-kkr
title: Craniida Waagen, 1885

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/nskhk333zp
title: A versatile and user-friendly approach for the analysis of ancient proteins.

description: MSMS files and COLLE database (in-house collagen database) of the work: A versatile and user-friendly approach for the analysis of ancient proteins. Ntasi G, Kirby D, Stanzione I, Carpentieri A,Somma P, Cicatiello P,Marino G,Giardina P and Birolo L
DOI: 10.3535/ezd-fmk-9m1
title: Craniida Waagen, 1885

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yj8-f4f-gaw
title: Craniida Waagen, 1885

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/a94-ral-q3f
title: Craniida Waagen, 1885

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/x3j-dte-d7d
title: Craniida Waagen, 1885

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21378312.v1
title: TreeBreaker input files for Mtb L4 in Southeast Asia

description: Example input and output data files for TreeBreaker analysis.
DOI: 10.6084/m9.figshare.28539515.v1
title: hc-PDmice-BPS-brian-Nanodrop.xlsx

description: aaaaa
DOI: 10.6084/m9.figshare.7512251.v1
title: Mission and effectiveness of Outdoor Clinics (Consultórios na Rua): an experience of consensus production

description: ABSTRACT This is an experience report about a Workshop carried out by professionals working in Outdoor Clinics ('Consultórios na Rua') in Rio de Janeiro, including the presentation of day-to-day work, discussion about the effectiveness of the offered health care and construction of consensus through the Delphi Technic. The Workshop concluded that the Outdoor Clinic is a facilitator of the arrival of users in Primary Care, that use of harm reduction is a standard practice in all services of this kind, and that there is a certain degree of integration of the Outdoor Clinics with health, mental health and the intersector, and this integration, even problematic, is essential to the work.