cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.76dc375/1
title: Table S1 database effect sizes - (Mal)adaptation meta-analysis

description: The following keywords were used in our literature searches of conservation strategies: `assisted colonization`, `assisted migration`, `translocation`, `genetic rescue`, `evolutionary rescue`, `transgenerational plasticity`, `hybridi*ation AND outbreeding`, `hybridi*ation OR hybrid AND viability AND conservation`; (January 2018 using Web of Science or Google Scholar).  To determine if an article had usable data on maladaptation, we used the following four criteria: (1) data must include a fitness metric, including survival, fecundity or egg/seed size, or abundance or recruitment;  correlates of fitness such as growth or body size were rejected; (2) either data from a control without a conservation intervention (to measure relative fitness), or data from the population before conservation was implemented (to measure absolute fitness), must be available; (3) data from at least two different time periods after the conservation intervention must be available; (4) sample size, and a metric of sampling variance (standard error or deviation, or confidence intervals) for the fitness metrics must be reported. A total of 15 articles on a total of 15 species were selected based on these four criteria. The species covered a wide taxonomic breadth, including yeast, plants, invertebrate animals, and vertebrate animals. A total of 95 entries were included, with multiple entries from most studies. The type of conservation intervention (i.e., the conservation “strategy”) was gleaned from study abstracts. We also recorded whether the experimental conditions imposed were stressful (40 entries, experimental stress treatment, e.g., high salt or heat shock) or benign (55 entries, control treatment, e.g., low salt or no heat shock, or no implicit stress treatment imposed).
DOI: 10.5061/dryad.76dc375/2
title: Table S2- Meta-analysis: larger dataset of conservation strategies based on categorical data (fitness improved, declined, or did not change)

description: Using a larger dataset than Table S1 that also included studies without sampling variability or sample size, we were table to extract data from 35 studies on a total of 33 species. This dataset included all 95 entries from the smaller dataset described above, and an additional 35 entries, for a grand total of 130 entries. For each entry, we recorded whether the longer time period increased or decreased fitness relative to the short time period, using the equation: 
(w2 – w0 or wcontrol2) – (w1 – w0 or wcontrol1) = difference
This difference was recorded as “positive”, “negative” or 0. This was done for each of the 130 entries. We then created a collapsed database, with only one entry per combination of study, species, and conservation strategy (noting that some studies included multiple species or strategies). If all entries for a study or species or strategy had differences (as above) that were positive, we assigned that entry as “positive”, and similarly for differences that were all “negative”. If some entries were positive and others were negative for a given study/species/strategy, we assigned that entry a 0, meaning we were unable to conclusively determine whether the conservation implementation was beneficial over the long term.
DOI: 10.5061/dryad.771q160/1
title: Elymus elymoides seedling trait, climate, and field performance data

description: This file contains population means for seed and seedling traits of 10-day old Elymus elymoides plants grown in a greenhouse environment, climate variables associated with the collection location and five field planting sites, and population-level performance (survival, greenness, and biomass) of each population at each field site.
DOI: 10.5061/dryad.798d8m6/2
title: TPB_data
DOI: 10.5061/dryad.95p86c0/1
title: Ravenscraft2019_Data

description: qPCR data (bacterial 16S and butterfly ef1a), microbiome data (16S OTU tables; bacterial taxonomy, phylogenetic tree, and representative fasta sequences of the OTUs), cumulative butterfly metadata (over the lifespan) and daily butterfly metadata in .csv and .txt formats. See README file for detailed descriptions of individual files.
DOI: 10.5061/dryad.96q5g80/1
title: Kyogoku.Kondoh.Sota.2019.Ecol.Evol.data

description: Replicated experimental evolution lines of Callosobruchus chinensis (beetle) first evolved under either polygamy or monogamy. These experimental evolution lines then competed with Callosobruchus maculatus. All trials resulted in the extinction of C. chinensis. The data file includes time until extinction, and demographyc dynamics of the competition for a subset of the replications.
DOI: 10.5061/dryad.cg5p7bk/1
title: Complete raw data

description: The complete raw data for all experiments conducted within the study can be found in the excel file, from sheet 1 to 12.
DOI: 10.5061/dryad.d02sc44/1
title: Lamrabet_MBE_Data

description: The file contains raw data for growth rate measurements, glucose uptake measurements, and RT-qPCR. Each sheet corresponds to the data from the indicated figure.
DOI: 10.5061/dryad.dr8277c/1
title: Choice experiment - Figure 1

description: Dataset used for the analysis of experiment 1 (choice experiment). Results are shown in figure 1.
DOI: 10.5061/dryad.k6483cr.1
title: Data from: A first phylogenetic analysis reveals a new arboreal tarantula genus from South America with description of a new species and two new species of Tapinauchenius Ausserer, 1871 (Araneae, Mygalomorphae, Theraphosidae)
DOI: 10.5061/dryad.k6483cr.1/1.1
title: Supplemental Data 1
DOI: 10.5061/dryad.k6483cr.2/1.2
title: Supplemental Data 1
DOI: 10.5061/dryad.k6483cr.2/2.2
title: Sequence Data
DOI: 10.5061/dryad.k66n2g2/1
title: Supplementary material

description: Supplementary e-Tables 1-5, and Supplementary Figure e-1. 

This research has been conducted using the UK Biobank Resource under Application Number 17689 (PI: Lyall).
DOI: 10.5061/dryad.kh63hm4/1
title: Insect performance and plant physiological data
DOI: 10.5061/dryad.m7f92c3/1
title: Brunetetal-Distance-Direction-ForagingBehavior-PloSONE

description: This file summarizes the distance traveled and direction flown between two consecutive racemes (cm) by bumble bees, honey bees and leafcutting bees. These data were collected over two years in patches of Medicago sativa.
DOI: 10.5061/dryad.m7f92c3/2
title: Brunetetal-NetDistances-ForagingBehavior-PlosOne

description: This file describes the net distance traveled by bumble bees, honey bees and leafcutting bees during a foraging bout on Medicato sativa. The net distance is the distance between where a bee started foraging in a patch and where it ended its foraging bout.
DOI: 10.5061/dryad.m7f92c3/3
title: Brunetetal-Residence-ForagingBehavior-PLoSONE

description: This file indicates the total number of flowers (residence) visited by bumble bees and honey bees during a full foraging bout in patches of Medicago sativa. Residence indicates all flowers visited by a bee between the time it entered and left the patch.
DOI: 10.5061/dryad.m7f92c3/4
title: Brunetetal-Tripping-ForagingBehavior-PloSONE

description: These data summarize the tripping rate of bumble bees, honey bees and leafcutting bees when visiting patches of Medicago sativa over two years. It includes the number of flowers visited in a raceme by a bee and the number of flowers tripped by a bee. A bee does not typically trip all flowers visited.
DOI: 10.5061/dryad.ms65f29/5
title: 5) Data from faecal analysis

description: 5-a) Animal species (gorilla, chimpanzee)
5-b) Date of sample collection
5-c) Month of collection
5-d) Year of collection
5-e) Sample ID
5-f) Species name: The plant species name observed in the faecal sample
5-g) Family: The family name of the plant species found in the sample
5-h) Number of seeds in the faecal sample
DOI: 10.5061/dryad.n222q81/1
title: 3D models
DOI: 10.5061/dryad.nj16d88/1
title: ND2_alignment

description: Nexus file for NADH dehydrogenase subunit 2 (ND2) sequence alignment
DOI: 10.5061/dryad.nj16d88/2
title: rad_loci_50p
DOI: 10.5061/dryad.nj16d88/3
title: uce_loci_50p
DOI: 10.5061/dryad.qb6v87h/10
title: Geographic coordinates and genotype data for the analysis of the spatial genetic structure of the moss Bryum argenteum

description: ITS sequence data from Pisa et al. (2013, American Journal of Botany, 100, 2000–2008). If you use the data in this file, please cite the original publication: Pisa, S., Werner, O., Vanderpoorten, A., Magdy, M., & Ros, R.M. (2013) Elevational patterns of genetic variation in the cosmopolitan moss Bryum argenteum (Bryaceae). American Journal of Botany, 100, 2000–2008.
DOI: 10.5061/dryad.qb6v87h/11
title: Geographic coordinates and genotype data for the analysis of the spatial genetic structure of the liverwort Crossocalyx hellerianus from Finland and Poland

description: Nuclear microsatellite data from Hola E. et al. (2015, PloS ONE, 10, e0133134) for Finland and Poland. If you use the data in this file, please cite the original publication: Holá, E., Košnar, J., & Kučera, J. (2015) Comparison of genetic structure of epixylic liverwort Crossocalyx Hellerianus between central European and Fennoscandian populations. PloS ONE, 10, e0133134.
DOI: 10.5061/dryad.qb6v87h/12
title: Geographic coordinates and genotype data for the analysis of the spatial genetic structure of the liverwort Crossocalyx hellerianus, population M

description: Nuclear microsatellite data from Hola E. et al. (2015, PloS ONE, 10, e0133134) for population M of the liverwort Crossocalyx hellerianus, with pairwise geographic distance matrix (in cm) If you use the data in this file, please cite the original publication: Holá, E., Košnar, J., & Kučera, J. (2015) Comparison of genetic structure of epixylic liverwort Crossocalyx Hellerianus between central European and Fennoscandian populations. PloS ONE, 10, e0133134.
DOI: 10.5061/dryad.qb6v87h/4
title: Geographic coordinates and genotype data for the analysis of the spatial genetic structure of the liverwort Crossocalyx hellerianus, population G

description: Nuclear microsatellite data from Hola E. et al. (2015, PloS ONE, 10, e0133134) for population G of the liverwort Crossocalyx hellerianus, with pairwise geographic distance matrix (in cm) If you use the data in this file, please cite the original publication: Holá, E., Košnar, J., & Kučera, J. (2015) Comparison of genetic structure of epixylic liverwort Crossocalyx Hellerianus between central European and Fennoscandian populations. PloS ONE, 10, e0133134.
DOI: 10.5061/dryad.qb6v87h/5
title: Geographic coordinates and genotype data for the analysis of the spatial genetic structure of the liverwort Crossocalyx hellerianus, population K

description: Nuclear microsatellite data from Hola E. et al. (2015, PloS ONE, 10, e0133134) for population K of the liverwort Crossocalyx hellerianus, with pairwise geographic distance matrix (in cm) If you use the data in this file, please cite the original publication: Holá, E., Košnar, J., & Kučera, J. (2015) Comparison of genetic structure of epixylic liverwort Crossocalyx Hellerianus between central European and Fennoscandian populations. PloS ONE, 10, e0133134.
DOI: 10.5061/dryad.qb6v87h/6
title: Geographic coordinates and genotype data for the analysis of the spatial genetic structure of the liverwort Diplophyllum albicans

description: cpDNA sequence data from Ledent et al. (Ecology Letters, in press) If you use the data in this file, please cite the original publication: Ledent, A., Désamoré, A., Laenen, B., Mardulyn, P., McDaniel, S.F., Zanatta, F., (…) & Vanderpoorten, A. (2019) No borders during the post-glacial assembly of European bryophytes. Ecology Letters, in press.
DOI: 10.5061/dryad.qb6v87h/7
title: Geographic coordinates and genotype data for the analysis of the spatial genetic structure of the moss Rhynchostegium riparioides in Belgium

description: Nuclear microsatellite data from Hutsemékers et al. (2010, New Phytologist, 185, 852–864). If you use the data in this file, please cite the original publication: Hutsemékers, V., Hardy, O., Mardulyn, P., Shaw, A., & Vanderpoorten, A. (2010) Macroecological patterns of genetic structure and diversity in the aquatic moss Platyhypnidium riparioides. New Phytologist, 185, 852–864.
DOI: 10.5061/dryad.qb6v87h/8
title: Geographic coordinates and genotype data for the analysis of the spatial genetic structure of the moss Rhynchostegium riparioides, SW Europe

description: Nuclear microsatellite data from Hutsemékers V. et al. (2011, Proceedings of the National Academy of Sciences of the USA, 108, 18989-18994). If you use the data in this file, please cite the original publication: Hutsemékers, V., Shaw, A.J., Szövényi, P., Gonzalez-Mancebo, J.M., Muñoz, J., & Vanderpoorten A. (2011) Islands are not sinks of biodiversity in spore-producing plants. Proceedings of the National Academy of Sciences of the USA, 108, 18989-18994.
DOI: 10.5061/dryad.qb6v87h/9
title: Geographic coordinates and genotype data for the analysis of the spatial genetic structure of the moss Sphagnum warnstorfii

description: Nuclear microsatellite data from Mikulášková, E. et al. (2014, Ecology & Evolution, 5, 229– 242). If you use the data in this file, please cite the original publication: Mikulášková, E., Hájek, M., Veleba, A., Johnson, M.G., Hájek, T., & Shaw, A.J. (2014) Local adaptations in bryophytes revisited: the genetic structure of the calcium-tolerant peatmoss Sphagnum warnstorfii along geographic and pH gradients. Ecology & Evolution, 5, 229– 242.
DOI: 10.5061/dryad.r7b018m/1
title: Metadata for Human-initiated behaviorally-mediated indirect interactions reduce bold behaviors and decrease predation rates in new protected areas

description: Metadata for data file from predation rate experiments conducted in Monterey Bay National Marine Sanctuary in 2015.
DOI: 10.5061/dryad.r7b018m/2
title: Data for Human-initiated behaviorally-mediated indirect interactions reduce bold behaviors and decrease predation rates in new protected areas

description: Data file for predation rate experiments conducted in Monterey Bay National Marine Sancturary in 2015.
DOI: 10.5061/dryad.v116vr8/1
title: Master copy_age vs. avg.trip.dur_no.fg.trip latest version

description: Master copy
DOI: 10.17632/33grsvz55z.1
title: Data for: Predictive Value of a Prognostic Model Based on Pathologic Features in Lung Invasive Adenocarcinoma

description: Predictive Value of a Prognostic Model Based on Pathologic Features in Lung Invasive Adenocarcinoma
DOI: 10.17632/93726brcbw.2
title: Clinical study of the innervation of the anterior hard palate

description: The conventional nasopalatine nerve block (NPNB) is commonly used to obtain anaesthesia in the anterior portion of the palate. Unfortunately, NPNB cannot always yield a satisfied anesthesia effect at the palatal gingiva of anterior teeth, which reflects the controversy about the innervation of this area and the distribution of nasopalatine nerve. The present research was designed to study the innervation of the anterior part of hard palate (AHP) in patients of different ages. 182 children with mixed dentition and 219 patients with permanent dentition who were indicated to local anesthesia during treatment were included into this study. Patients in mixed dentition were randomly divided into group A1 and group A2, and received NPNB or bilateral greater palatine nerve block (BGPNB) respectively. Patients in permanent dentition were divided into adolescent group (range 13-18 years) and adult group (over the age of 19 years), and all accepted BGPNB. Using Von Frey hairs, the anesthetic efficiency were examined by testing the pain sensation of the palatal mucosa pre- and post-anesthetically. All the data were analyzed by Student's t tests and Pearson's chi-square tests. For children with mixed dentition, BGPNB was likely to result better anesthesia at the AHP than NPNB did (p&lt;0.05), except the incisive papilla, in which the anesthetic effect of the NPNB was significantly superior to that of the BGPNB. Meanwhile, BGPNB was found more effective for anesthesia of AHP in children than that in people with permanent dentition, i.e., adolescents and adults (p&lt;0.05). However, there was no significant difference in anesthetic effect of AHP between adolescent and adult. The results of present study indicated that the sensation of anterior hard palate is mainly dominated by the greater palatine nerve in childhood and gradually shifts to nasopalatine nerve accompanied with the development of maxilla and tooth replacement. It seemed that the nasopalatine nerve undergoes a process of secondary development through adolescence. Such converting of innervation should be accounted in local anesthesia of AHP area.
DOI: 10.17632/cb52nfg4mk.1
title: Data for: The Correlation between Anxiety and Motivation in English Learning Context for Chinese Learners
DOI: 10.5061/dryad.0898ss6/1
title: Code_kittiwake heterogeneity

description: R Code to calculate environmental heterogeneity and the links with foraging dynamics
DOI: 10.5061/dryad.1vp7476/2
title: Morphometrics

description: Bee mass and head size data used to compare across task groups and sites
DOI: 10.5061/dryad.1vp7476/3
title: Removal Data Brazil

description: Data used to assess the effects of guard removal in domesticated Brazilian population. The final observation on day 8 was omitted due to rain.
DOI: 10.5061/dryad.1vp7476/4
title: Removal Data Panama

description: Data used to test for the effect of soldier removal on guard bee size in Panama.
DOI: 10.5061/dryad.1vp7476/5
title: Wing wear

description: Data used to test whether wing wear differed across task groups.
DOI: 10.5061/dryad.2rd3hf5/1
title: Nutrient limitation OIKOS 2019 data

description: Data from Construction and test of two procedures for quantifying food and macronutrient limitation of predatory beetles in the field.
DOI: 10.5061/dryad.62t8442/2
title: wetland_vegetation_data_124species_processed

description: Composition and abundance data of 124 plant vascular plant species within study wetlands.
DOI: 10.5061/dryad.62t8442/3
title: wetland_geographic_coordinates_48sites

description: Geographic coordinates of 48 wetlands within the Alberta Grassland and Parkland natural regions.
DOI: 10.5061/dryad.6g635f6/2
title: Stift_et_al_used_R_code

description: This package contains the R-script used for simulating genetic data of two (or more) populations of a species with multiple ploidy levels. The script is extensively annotated using comments. The script will also perform several clustering analyses on the produced genetic data files. For this, the programs Structure, Admixture, and Instruct should be first downloaded from their respective websites, and placed in the R working directory. The package also contains the parameter files that are used for the Structure analysis; these should also be placed in the working directory.
DOI: 10.5061/dryad.6vq2mp0/1
title: GBP recruitment

description: This dataset can be used to study recruitment of murine Gbps to Toxoplasma vacuoles using HRMAn. A description of the dataset and an instruction on how to use it can be found in the README file contained in the archive.
DOI: 10.5061/dryad.6vq2mp0/2
title: Interferon titration A549 cells

description: This dataset can be used to study the effect of IFNg treatment on Toxoplasma replication in human A549 cells using HRMAn. A description of the dataset and an instruction on how to use it can be found in the README file contained in the archive.
DOI: 10.5061/dryad.6vq2mp0/3
title: Protein translocation

description: This dataset can be used to study translocation of Toxoplasma effector proteins to the nucleus of the infected host cell using HRMAn. A description of the dataset and an instruction on how to use it can be found in the README file contained in the archive.
DOI: 10.5061/dryad.6vq2mp0/4
title: Salmonella ubiquitination

description: This dataset can be used to study ubiquitination of Salmonella enterica Typhimurium in HeLa cells using HRMAn. A description of the dataset and an instruction on how to use it can be found in the README file contained in the archive.
DOI: 10.5061/dryad.7bm444s/2
title: Imaging quantification & sequencing data & Script

description: There are 3 subfolders in "Data Revision", Imaging quantification, Sequencing data and Script. The raw imaging quantification (.xlsx) and statistical analysis results (.csv) are provided in "Imaging quantification" folder with corresponding names. Movies for Fig6 are also available in this folder. Folders "Sequencing data" and "Script" includes all the sequencing data files and Matlab scripts for the paper (Figure2C; FigureS2 and FigureS4). In folder “Raw”, four fastq files used for both BrdU-IP-Seq (QBU) and ChIP-seq (ChIP) data analysis are provided. In folder “Processed”, processed sequencing data directly used for figure plotting were provided as bed files. Please see Excel file "README" for detailed description about each file.
DOI: 10.5061/dryad.7c702sb/1
title: Data set

description: Main data from which analyses in Morimoto et al. 2019. are performed. The file is a .csv format. For a full description of the data in each column see the README file.
DOI: 10.5061/dryad.9tk0t57/1
title: Yule&Burns_Data

description: All data used in manuscript
DOI: 10.5061/dryad.9tk0t57/2
title: R Code

description: R Code
DOI: 10.5061/dryad.b3s4v0g/2
title: Pelagosaurus cranium model

description: Surface model of the cranium of Pelagosaurus.
DOI: 10.5061/dryad.b3s4v0g/3
title: Pelagosaurus mandible model

description: Surface model of the mandible of Pelagosaurus
DOI: 10.5061/dryad.c5f0ps6/1
title: Cox1_Dryad

description: Cox1 alignment in fasta format used to infer the phylogenetic tree
DOI: 10.5061/dryad.c5f0ps6/2
title: TMED9_Dryad

description: TMED9 alignment in fasta format used to infer the phylogenetic tree
DOI: 10.5061/dryad.ch8dd57/1
title: SREP-18-36523. Data
DOI: 10.5061/dryad.dr8277c/2
title: Proportion of movements at night - Figure 2a

description: Dataset used for the analysis of the proportion of movement (nocturnal restlessness) of birds at night. Results shown in Figure 2a.
DOI: 10.5061/dryad.dr8277c/3
title: Delta oxalic acid - Figure 2b

description: Datast used for the analyis of changes in plasma oxalic acid levels. Results shown in figure 2b.
DOI: 10.5061/dryad.dr8277c/4
title: Cognitive tests - Figure 2c

description: Dataset used for the analysis of the cognitive tests. Results shown in figure 2c.
DOI: 10.5061/dryad.dr8277c/5
title: DEE - Figure 2d

description: Dataset used for the analysis of daily energy expenditure (DEE). Results shown in figure 2d.
DOI: 10.5061/dryad.dr8277c/6
title: onset-offset of activity - Figure S2ab

description: Dataset used to analyse the onset and offset of daily activity. Results are shown in supplementary figure 1 (panels a and b).
DOI: 10.5061/dryad.dr8277c/7
title: night and total activity - Figure S2cd

description: Dataset used to analysed nocturnal and total daily activity. Results are shown in supplementary figure 2 (panels c and d).
DOI: 10.5061/dryad.gk44j56/1
title: Demographic, willingness to pay, and cooperation scenario data, collected from crofters (farmers) in the Uists, Scotland in 2016, regarding the management of wild geese

description: Originally entered manually into Excel from paper data sheets. See readme file for column headings and details
DOI: 10.5061/dryad.h7b12g4/1
title: Annual Trends Preston and Starcross

description: This file contains the Culicoides trap collection data for both Preston and Starcross sites and source code for analysis using the Bayesian models described in the paper.
DOI: 10.5061/dryad.hp388dm/1
title: MD5

description: This file contains the checksums to verify file integrity of the data files.
DOI: 10.5061/dryad.hp388dm/2
title: README
DOI: 10.5061/dryad.hp388dm/3
title: Phased genotypes of Caribbean reef fishes (Hypoplectrus sp.)

description: Genotypes of 51 hamlets (H. gemma, H. maya, H. nigricans, H. puella and H. unicolor). Based on ~24x Illumina sequencing data, created with GATK and phased using SHAPEIT.