cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc23x103
title: CCDC 1963354: Experimental Crystal Structure Determination

description: Related Article: Sohel Akhtar, Pabitra Singha, Avik De, Krishna Sundar Das, Sayan Saha, Sukhen Bala, Raju Mondal|2021|New J.Chem.|45|6438|doi:10.1039/D0NJ03424J
DOI: 10.5517/ccdc.csd.cc23x114
title: CCDC 1963355: Experimental Crystal Structure Determination

description: Related Article: Sohel Akhtar, Pabitra Singha, Avik De, Krishna Sundar Das, Sayan Saha, Sukhen Bala, Raju Mondal|2021|New J.Chem.|45|6438|doi:10.1039/D0NJ03424J
DOI: 10.5517/ccdc.csd.cc26mt5v
title: CCDC 2044827: Experimental Crystal Structure Determination

description: Related Article: Alexandra V. Popova, Ali Kanaa, Vladislava S. Vavilova, Maria A. Mironova, Pavel A. Slepukhin, Enrico Benassi, Nataliya P. Belskaya|2021|New J.Chem.|45|6315|doi:10.1039/D0NJ06287A
DOI: 10.5517/ccdc.csd.cc26mt4t
title: CCDC 2044826: Experimental Crystal Structure Determination

description: Related Article: Alexandra V. Popova, Ali Kanaa, Vladislava S. Vavilova, Maria A. Mironova, Pavel A. Slepukhin, Enrico Benassi, Nataliya P. Belskaya|2021|New J.Chem.|45|6315|doi:10.1039/D0NJ06287A
DOI: 10.5517/ccdc.csd.cc26njl0
title: CCDC 2045522: Experimental Crystal Structure Determination

description: Related Article: Lidija Androš Dubraja, Dijana Žilić, Kristina Olujić, Luka Pavić, Krešimir Molčanov, Damir Pajić|2021|New J.Chem.|45|6336|doi:10.1039/D1NJ00430A
DOI: 10.5281/zenodo.4682153
title: Data Jobs Offers

description: Ofertas de trabajos relacionadas con los datos publicadas en el portal web https://www.domestika.org.
DOI: 10.5281/zenodo.4682152
title: Data Jobs Offers

description: Ofertas de trabajos relacionadas con los datos publicadas en el portal web https://www.domestika.org.
DOI: 10.5281/zenodo.4682174
title: MostPopularDrugs

description: Through vademecum.es, information has been obtained on the drugs most sought after by users, name, active ingredients, doses, reports of therapeutic positioning and manufacturing laboratory. This dataset could provide us with information on the most common diseases in the population and the pharmaceutical companies that currently sell the most. More attributes could be added to our dataset in the future. MostPopularDrugs currently contains 4 attributes: medication: name of the medication and most searched dose.<br> atc: anatomical-therapeutic-chemical classification.<br> lab: laboratory where the medicine has been manufactured.<br> ipt: therapeutic classification.
DOI: 10.5281/zenodo.4682173
title: MostPopularDrugs

description: Through vademecum.es, information has been obtained on the drugs most sought after by users, name, active ingredients, doses, reports of therapeutic positioning and manufacturing laboratory. This dataset could provide us with information on the most common diseases in the population and the pharmaceutical companies that currently sell the most. More attributes could be added to our dataset in the future. MostPopularDrugs currently contains 4 attributes: medication: name of the medication and most searched dose.<br> atc: anatomical-therapeutic-chemical classification.<br> lab: laboratory where the medicine has been manufactured.<br> ipt: therapeutic classification.
DOI: 10.5281/zenodo.4677546
title: Images of copper wires with various diameters for validating root image analysis

description: This image set of copper wires was used for ground truth measurements to validate RhizoVision Explorer, and open-source software for image analysis of plant roots, as described further below. <strong>Preprint of the manuscript:</strong> Seethepalli, A., Dhakal, K., Griffiths, M., Guo, H., Freschet, G. T., York, L. M. (2021). RhizoVision Explorer: Open-source software for root image analysis and measurement standardization. bioRxiv: 2021.2004.2011.439359. doi: https://doi.org/10.1101/2021.04.11.439359 <strong>Methods:</strong> Copper wire samples with average lengths of 30.48 cm and various diameter wire gauges (American Wire Gauge 40, 32, 28, 22, 16, and 10; with the diameter ranging from 0.09–2.59 mm) were used for the validation. For each gauge, two wires were used for a total of 12 wires. The diameter of each wire was measured with a digital micrometer and the length was measured by fitting string to the length of the wire, then measured with a ruler. The surface area and volume for each wire were calculated assuming the wires were cylinders. The average diameter for scans containing multiple wires was calculated as the weighted diameter based on the length of each wire in the scan. The wires were then scanned on an Epson Expression 12000XL flatbed scanner with a transparency unit (overhead light), as common practice for root imaging. The images were digitized at 600 dpi as 16-bit grayscale images and then saved as TIFF (tagged image file format). Scans were taken in 28 combinations from individual wires to all as shown in order to achieve variation in total length, average diameter, total surface area, and total volume. The ZIP file contains these 28 images, as well as a CSV file containing the ground truth data measured or calculated as described above.
DOI: 10.5281/zenodo.4677545
title: Images of copper wires with various diameters for validating root image analysis

description: This image set of copper wires was used for ground truth measurements to validate RhizoVision Explorer, and open-source software for image analysis of plant roots, as described further below. <strong>Preprint of the manuscript:</strong> Seethepalli, A., Dhakal, K., Griffiths, M., Guo, H., Freschet, G. T., York, L. M. (2021). RhizoVision Explorer: Open-source software for root image analysis and measurement standardization. bioRxiv: 2021.2004.2011.439359. doi: https://doi.org/10.1101/2021.04.11.439359 <strong>Methods:</strong> Copper wire samples with average lengths of 30.48 cm and various diameter wire gauges (American Wire Gauge 40, 32, 28, 22, 16, and 10; with the diameter ranging from 0.09–2.59 mm) were used for the validation. For each gauge, two wires were used for a total of 12 wires. The diameter of each wire was measured with a digital micrometer and the length was measured by fitting string to the length of the wire, then measured with a ruler. The surface area and volume for each wire were calculated assuming the wires were cylinders. The average diameter for scans containing multiple wires was calculated as the weighted diameter based on the length of each wire in the scan. The wires were then scanned on an Epson Expression 12000XL flatbed scanner with a transparency unit (overhead light), as common practice for root imaging. The images were digitized at 600 dpi as 16-bit grayscale images and then saved as TIFF (tagged image file format). Scans were taken in 28 combinations from individual wires to all as shown in order to achieve variation in total length, average diameter, total surface area, and total volume. The ZIP file contains these 28 images, as well as a CSV file containing the ground truth data measured or calculated as described above.
DOI: 10.5281/zenodo.4677751
title: Scanned images of roots from wild herbaceous species, trees, maize, and wheat

description: These scanned images of roots from various plant species were used to compare RhizoVision Explorer, and open-source software for image analysis of plant roots, to another popular software. <strong>Preprint of the manuscript:</strong> Seethepalli, A., Dhakal, K., Griffiths, M., Guo, H., Freschet, G. T., York, L. M. (2021). RhizoVision Explorer: Open-source software for root image analysis and measurement standardization. bioRxiv: 2021.2004.2011.439359. doi: https://doi.org/10.1101/2021.04.11.439359 <strong>Description of images:</strong> To compare the efficacy of RVE, scanned grayscale root images of maize (<em>Zea mays</em> L.), wheat (<em>Triticum aestivum</em> L.), and various herbaceous and tree species were analyzed and compared with the image analysis results from WinRhizo™. The herbaceous species include 9 species sampled at ca. 115 days old: (<em>Bromus erectus, Dactylis glomerata, Holcus lanatus, Plantago lanceolata, Sanguisorba minor, Taraxacum officinale, Lotus corniculatus, Medicago sativa, Trifolium repens</em>) (Freschet, Grégoire T. et al., 2018). The maize (Zea mays L.) roots included scans from 40-day old plants across 30 cm depths for several nodes of roots (Guo and York, 2019). The wheat (Triticum aestivum) roots are entire root systems from 10-day old wheat seedlings grown in hydroponics (Guo et al., 2020). The tree roots are from the unpublished work of M. Luke McCormack and include root branches from 14 gymnosperm species (<em>Cephalotaxus harringtonii, Ephedra distachya, Chamaecyparis pisifera, Ginkgo biloba, Juniperus chinensis, Larix decidua, Metasequoia glyptostroboides, Picea abies, Pinus resinosa, Pinus strobus, Sciadopitys verticillata, Taxus cuspidata, Taxodium distichum, Tsuga canadensis</em>). All these image sets were scanned separately in different labs using Epson scanners with transparency units at resolutions of 600 DPI for maize, wheat, and herbaceous species, and 800 DPI for the tree species.<br> <br> The ZIP file contains a folder for each set of images, and each folder also contains the tabular data from both WinRhizo and RhizoVision Explorer.
DOI: 10.5281/zenodo.4677750
title: Scanned images of roots from wild herbaceous species, trees, maize, and wheat

description: These scanned images of roots from various plant species were used to compare RhizoVision Explorer, and open-source software for image analysis of plant roots, to another popular software. <strong>Preprint of the manuscript:</strong> Seethepalli, A., Dhakal, K., Griffiths, M., Guo, H., Freschet, G. T., York, L. M. (2021). RhizoVision Explorer: Open-source software for root image analysis and measurement standardization. bioRxiv: 2021.2004.2011.439359. doi: https://doi.org/10.1101/2021.04.11.439359 <strong>Description of images:</strong> To compare the efficacy of RVE, scanned grayscale root images of maize (<em>Zea mays</em> L.), wheat (<em>Triticum aestivum</em> L.), and various herbaceous and tree species were analyzed and compared with the image analysis results from WinRhizo™. The herbaceous species include 9 species sampled at ca. 115 days old: (<em>Bromus erectus, Dactylis glomerata, Holcus lanatus, Plantago lanceolata, Sanguisorba minor, Taraxacum officinale, Lotus corniculatus, Medicago sativa, Trifolium repens</em>) (Freschet, Grégoire T. et al., 2018). The maize (Zea mays L.) roots included scans from 40-day old plants across 30 cm depths for several nodes of roots (Guo and York, 2019). The wheat (Triticum aestivum) roots are entire root systems from 10-day old wheat seedlings grown in hydroponics (Guo et al., 2020). The tree roots are from the unpublished work of M. Luke McCormack and include root branches from 14 gymnosperm species (<em>Cephalotaxus harringtonii, Ephedra distachya, Chamaecyparis pisifera, Ginkgo biloba, Juniperus chinensis, Larix decidua, Metasequoia glyptostroboides, Picea abies, Pinus resinosa, Pinus strobus, Sciadopitys verticillata, Taxus cuspidata, Taxodium distichum, Tsuga canadensis</em>). All these image sets were scanned separately in different labs using Epson scanners with transparency units at resolutions of 600 DPI for maize, wheat, and herbaceous species, and 800 DPI for the tree species.<br> <br> The ZIP file contains a folder for each set of images, and each folder also contains the tabular data from both WinRhizo and RhizoVision Explorer.
DOI: 10.5281/zenodo.4680231
title: Source data of "molDiscovery: Learning Mass Spectrometry Fragmentation of Small Molecules"

description: Source data of "molDiscovery: Learning Mass Spectrometry Fragmentation of Small Molecules"
DOI: 10.5281/zenodo.4680230
title: Source data of "molDiscovery: Learning Mass Spectrometry Fragmentation of Small Molecules"

description: Source data of "molDiscovery: Learning Mass Spectrometry Fragmentation of Small Molecules"
DOI: 10.25573/data.14183045
title: Chlorophyll fluorescence data to estimate leaf heat tolerance for 150 plant species in Panama (Associated with Slot et al. 2021. Plant, Cell & Environment)

description: These are the data corresponding to the publication <i>"Leaf heat tolerance of 147 tropical forest species varies with elevation and leaf functional traits, but not with phylogeny</i>" by Slot, Cala, Aranda, Virgo, Michaletz and Winter, published in Plant, Cell & Environment in 2021.Samples were collected from plants growing in six regions in the Republic of Panama. Leaf discs were incubated for 15 minutes at different temperatures in a water bath, and after 24 hours the maximum over variable chlorophyll fluorescence (Fv/Fm) was measured. Species names were checked against Kew's Plants of the World database, at: http://powo.science.kew.org/<br><br><br><br><br>
DOI: 10.3886/e114429v1-83860
title: Replication data for: Intergenerational Effects of Incarceration

description: An often overlooked population in discussions of prison reform is the children of inmates. How a child is affected depends both on what incarceration does to their parent and what they learn from their parent's experience. To overcome endogeneity concerns, we exploit the random assignment of judges who differ in their propensity to send defendants to prison. Using longitudinal data for Norway, we find that imprisonment has no effect on fathers' recidivism but reduces their employment by 20 percentage points. We find no evidence that paternal incarceration affects a child's criminal activity or school performance.
DOI: 10.5281/zenodo.4682056
title: CIBench: A Dataset and Collection of Techniquesfor Build and Test Selection and Prioritization inContinuous Integration

description: This data set that is an extension of Travis Torrent contains four parts: 1. Original TravisTorrent data set. 2. Extended TravisTorrent data set including commit information and test information. 3. Replication of build/test selection/prioritization techniques. 4. Evaluation of different metrics.
DOI: 10.5281/zenodo.3696083
title: CIBench: A Dataset and Collection of Techniquesfor Build and Test Selection and Prioritization inContinuous Integration

description: This data set that is an extension of Travis Torrent contains four parts: 1. Original TravisTorrent data set. 2. Extended TravisTorrent data set including commit information and test information. 3. Replication of build/test selection/prioritization techniques. 4. Evaluation of different metrics.
DOI: 10.5281/zenodo.4680956
title: CIBench: A Dataset and Collection of Techniquesfor Build and Test Selection and Prioritization inContinuous Integration

description: This data set that is an extension of Travis Torrent contains four parts: 1. Original TravisTorrent data set. 2. Extended TravisTorrent data set including commit information and test information. 3. Replication of build/test selection/prioritization techniques. 4. Evaluation of different metrics.
DOI: 10.15468/xnb3wb
title: A new synonym of Polygonatum in China, based on morphological and molecular evidence

description: This dataset contains the digitized treatments in Plazi based on the original journal article Xia, Maoqin, Liu, Ying, Liu, Jingjing, Chen, Donghong, Shi, Yan, Bai, Zhicong, Xiao, Yu, Peng, Chen, Si, Jinping, Li, Pan, Qiu, Yingxiong (2021): A new synonym of Polygonatum in China, based on morphological and molecular evidence. PhytoKeys 175: 137-149, DOI: http://dx.doi.org/10.3897/phytokeys.175.63383, URL: http://dx.doi.org/10.3897/phytokeys.175.63383
DOI: 10.15468/ayt798
title: Stygobromus bakeri, a new species of groundwater amphipod (Amphipoda, Crangonyctidae) associated with the Trinity and Edwards aquifers of central Texas, USA

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gibson 1, Randy, Hutchins 2, Benjamin T., Krejca 3, Jean K., Diaz 4, Peter H., Sprouse 3, Peter S. (2021): Stygobromus bakeri, a new species of groundwater amphipod (Amphipoda, Crangonyctidae) associated with the Trinity and Edwards aquifers of central Texas, USA. Subterranean Biology 38: 19-45, DOI: http://dx.doi.org/10.3897/subtbiol.38.61787, URL: http://dx.doi.org/10.3897/subtbiol.38.61787
DOI: 10.5517/ccdc.csd.cc27l3nm
title: CCDC 2072990: Experimental Crystal Structure Determination

description: Related Article: Katharina Münster, Laure Vendier, Sébastien Bontemps, Marc D. Walter|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27llwb
title: CCDC 2073462: Experimental Crystal Structure Determination

description: Related Article: Richard Copp, Mohamed Abdelnasser, Christopher M. Cimarusti, Chengxiang Liu|2020|U.S.Patents|||
DOI: 10.5281/zenodo.4682238
title: SeaFlow data: optical properties of single celled phytoplankton + auxillary physical data

description: The file contains two data types: <strong>CRUISENAME</strong><strong>_bio.parquet</strong>: contains optical properties of single celled phytoplankton measured by SeaFlow (namely <em>Prochlorococcus</em>, <em>Synechococcus</em> and picoeukaryotes), which includes forward light scattering, red and orange fluorescence measured in surface waters (~ 5 m depth) during each oceanographic cruise. The datasets has been sub-sampled to include 10% of the original data. <strong>CRUISENAME</strong><strong>_phys.parquet</strong>: contains location of the SeaFlow data, along with sea surface temperature and salinity measured during the cruises. For full description of the dataset, please read Ribalet et al. 2019.
description: This work was supported by grants from the Simons Foundation (#574495 to FR) and the National Aeronautics and Space Administration (#80NSSC17K0561 to FR)
DOI: 10.5281/zenodo.4289399
title: SeaFlow data: optical properties of single celled phytoplankton + auxillary physical data

description: The file contains two data types: <strong>CRUISENAME</strong><strong>_bio.parquet</strong>: contains optical properties of single celled phytoplankton measured by SeaFlow (namely <em>Prochlorococcus</em>, <em>Synechococcus</em> and picoeukaryotes), which includes forward light scattering, red and orange fluorescence measured in surface waters (~ 5 m depth) during each oceanographic cruise. The datasets has been sub-sampled to include 10% of the original data. <strong>CRUISENAME</strong><strong>_phys.parquet</strong>: contains location of the SeaFlow data, along with sea surface temperature and salinity measured during the cruises. For full description of the dataset, please read Ribalet et al. 2019.
description: This work was supported by grants from the Simons Foundation (#574495 to FR) and the National Aeronautics and Space Administration (#80NSSC17K0561 to FR)
DOI: 10.6084/m9.figshare.14391752
title: Outreach message engagement

description: The engagement that was received for every outreach tweet that the research team sent.
DOI: 10.6084/m9.figshare.9461126
title: Total tweet and user counts by cancer type

description: The total count of tweets and users by cancer types.
DOI: 10.6084/m9.figshare.9461051
title: Tweet counts by cancer type by week

description: Count of tweets captured each week by cancer type.
DOI: 10.17632/47d8vkw9m4.1
title: Data for: Microstructural analysis of the PV module cementation process at the Solar Platform of the Atacama Desert

description: This material corresponds to X Ray diffraction (XRD), SEM/EDX images and particle size as well as shape factor of samples collected from different PV module strings. -XRD appears as Fig. 3 in the paper. -SEM/EDX images as Fig. 4 in the paper. -Particle size and shape factor as Fig. 5 and Fig. 6.
DOI: 10.6084/m9.figshare.14403686
title: Male–male interactions select for conspicuous male coloration in damselflies

description: Male ornamentation, such as conspicuous male coloration, can evolve through female mate choice. Alternatively, in species without overt female mate preference, conspicuous male coloration can evolve as a badge of status via intrasexual selection to avoid costly fights or prevent mating attempts with other males. Here, we investigated the drivers of conspicuous male coloration in an ontogenetic colour-changing damselfly, <i>Xanthagrion erythroneurum, </i>where the juvenile males are yellow and change colour to red upon sexual maturity. We first showed that red males were chromatically and achromatically more conspicuous than the yellow males. We then quantified the condition of the males: red males were larger and in better condition than yellow males. We tested female preference in a choice experiment where we artificially manipulated male colour and found that females did not choose mates based on male coloration. We further tested whether the male coloration affected male–male interactions. We presented red and yellow males at the breeding site and measured behavioural responses from conspecific males and heterospecific (<i>Ischnura heterosticta</i>)<i></i>males. Red males received less aggression from conspecifics and heterospecifics than yellow males. Our study experimentally showed that male conspicuousness is not a target of female mate choice in damselflies. Instead, intra- and interspecific male–male interactions appear to be the driver of its evolution.
DOI: 10.17632/9cdvcv5ktk.1
title: Data for: Machine Learning-Based Surrogate Model for Accelerating Simulation-Driven Optimisation of Hydropower Kaplan Turbine
DOI: 10.5281/zenodo.4682258
title: CoVaxxy Tweet IDs data set

description: A collection of Tweet IDs related to Covid-19 Vaccines, gathered from Twitter since Jan 4, 2021. Please see https://arxiv.org/abs/2101.07694 for more information.
DOI: 10.5281/zenodo.4682261
title: Output Web of Science Coded _Crowdfunding

description: This is an output of academic articles based on Web of Science, whose results are coded and organized according to themes.
DOI: 10.5281/zenodo.4682260
title: Output Web of Science Coded _Crowdfunding

description: This is an output of academic articles based on Web of Science, whose results are coded and organized according to themes.
DOI: 10.6084/m9.figshare.14043794
title: Data and R Code for "Social dominance and cooperation in female vampire bats"

description: R scripts are numbered in order to run the code. Raw data includes (1) "events.csv" which shows the displacements of captive vampire bats by other vampire bats at feeders, (2) "vampire_bat_attributes_crisp.csv" which has attributes of individual bats in the study, and (3) "bat_mass.csv" which has the average mass of the bats. Other files are outputs of the R scripts. See Crisp et al. "Social dominance and cooperation in female vampire bats".
DOI: 10.6084/m9.figshare.14403782.v1
title: Proteome database of Salmonella typhimurium strain LT2

description: <i>Salmonella typhimurium</i> is a Gram-negative, enteric pathogen capable of causing serious illness in humans. An intracellular pathogen, <i>S. typhimurium</i> originally evolved from <i>Escherichia coli</i>, and the reasons the divergence in speciation took place remains mysterious considering that both species share dramatically different lifestyles. <i>S. typhimurium</i> is motile through the presence of peritrichous flagella on the cell surface. Of greater importance is that <i>S. typhimurium</i> is capable of adopting different metabolic modes through its facultative anaerobic metabolic capability which endows the bacterium to survive under both aerobic and anaerobic environments. This work sought to provide fundamental information about the proteome of <i>S. typhimurium</i> strain LT2 by parsing its annotated proteome file downloaded from UniProt through an in-house MATLAB proteome analysis software. Comprising protein name, amino acid sequence, and calculated variables such as number of residues, molecular weight and nucleotide sequence, the proteome database of <i>S. typhimurium</i> should provide a useful resource for further investigation into mysteries concerning the pathogenic mechanisms of this bacterium.