cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0071698.10fu
title: SH0071698.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.22008/fk2/ihvdxl/o2dv3y
title: EU_table_3,5-Dimethylphenol.csv

description: Deliverable 5
DOI: 10.22008/fk2/ihvdxl/ugsqjz
title: EU_table_Arsen.csv

description: Deliverable 5
DOI: 10.15468/dl.7p57gx
title: Occurrence Download

description: A dataset containing 1305 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Myrmoborus myotherinus (Spix, 1825)"
 ]
}

 The dataset includes 1305 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0124800-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vcr2ab
title: Occurrence Download

description: A dataset containing 27043 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (MEX, USA.3_1, USA.32_1, USA.44_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is Juniperus L."
 ]
}

 The dataset includes 27043 records from 190 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008967-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u5manz
title: Occurrence Download

description: A dataset containing 7880 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Country is Colombia",
 "TaxonKey is Ara Lacepede, 1799"
 ]
}

 The dataset includes 7880 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010566-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p223rz
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jaborosa lanigera (Phil.) Hunz. & Barboza"
 ]
}

 The dataset includes 33 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111072-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.meftht
title: Occurrence Download

description: A dataset containing 1872 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Antidesma vogelianum Müll.Arg."
 ]
}

 The dataset includes 1872 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008963-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mesjzw
title: Occurrence Download

description: A dataset containing 6325 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myriophora Brown, 1992"
 ]
}

 The dataset includes 6325 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021963-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ak48w7
title: Occurrence Download

description: A dataset containing 6583 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Odontosia sieversii (Ménétriés, 1856)"
 ]
}

 The dataset includes 6583 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128062-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g4pq6n
title: Occurrence Download

description: A dataset containing 45965 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Centranthus ruber (L.) DC., Centranthus ruber subsp. ruber, Centranthus ruber subsp. sibthorpii (Heldr. & Sart. ex Boiss.) Hayek, Cephalanthera cucullata Boiss. & Heldr., Cephalanthera damasonium (Mill.) Druce, Cephalanthera epipactoides Fisch. & C.A.Mey., Cephalanthera longifolia (L.) Fritsch, Cephalanthera rubra (L.) Rich., Cephalaria alpina (L.) Roem. & Schult., Cephalaria coriacea (Willd.) Roem. & Schult. ex Steud.)",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "DatasetKey is one of (Pl@ntNet automatically identified occurrences, Pl@ntNet observations, iNaturalist Research-grade Observations, Observation.org, Nature data from around the World, naturgucker, Artportalen (Swedish Species Observation System), Norwegian Species Observation Service, Programme d'observation naturaliste participative avec l'application mobile INPN Espèces - Application INPN Espèces: Observations naturalistes, participatives et opportunistes, fondées sur des photographies, Species recordings from the Danish National portal Arter.dk, Lajitietokeskus/FinBIF - Notebook, general observations, Vascular plant records verified via iRecord, iRecord Surveys)",
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 500",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 45965 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068983-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dnub3f
title: Occurrence Download

description: A dataset containing 12646 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Brachychiton populneus (Schott & Endl.) R.Br."
 ]
}

 The dataset includes 12646 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042633-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wwsele
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nosferatu bartoni (Bean, 1892)"
 ]
}

 The dataset includes 90 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003262-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cdf5fg
title: Occurrence Download

description: A dataset containing 34223 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-115.75195 26.8868,-110.47852 21.273,-99.05273 13.22284,-92.72461 12.53741,-89.73633 13.90635,-89.38477 16.11338,-86.39648 17.62727,-85.69336 22.5775,-95.36133 22.5775,-96.06445 26.72992,-100.81055 30.73617,-103.79883 30.43352,-105.20508 32.0863,-110.6543 32.0863,-114.87305 33.41677,-117.68555 32.97549,-115.75195 26.8868))",
 "HasGeospatialIssue is false",
 "TaxonKey is Burseraceae"
 ]
}

 The dataset includes 34223 records from 181 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0118849-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tq89yb
title: Occurrence Download

description: A dataset containing 409 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amyema scandens (Tiegh.) Danser"
 ]
}

 The dataset includes 409 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008961-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.umtsz6
title: Occurrence Download

description: A dataset containing 49544 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Octopoda"
 ]
}

 The dataset includes 49544 records from 324 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003261-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7yayy8
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amyema tetrapetala (Danser) Barlow"
 ]
}

 The dataset includes 20 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008995-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.min1da
title: Occurrence Download

description: A dataset containing 655 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nosferatu labridens (Pellegrin, 1903)"
 ]
}

 The dataset includes 655 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003267-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jukyv7
title: Occurrence Download

description: A dataset containing 761 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Flora acuática vascular del estado de Morelos, México"
 ]
}

 The dataset includes 761 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0118843-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mvwfba
title: Occurrence Download

description: A dataset containing 1434 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Angraecum eburneum Bory"
 ]
}

 The dataset includes 1434 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008977-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25949/25909876
title: Test of Listening Difficulties - Universal (Data set)

description: The Test of Listening Difficulties - Universal (ToLD-U) is designed to evaluate the understanding of speech in a noisy, reverberant environment, using sentences comprised of words that are familiar to children from age 5 up. The test is a realistic speech-in-noise test designed to be sensitive to several causes of difficulty understanding speech in noise. The test, conducted under headphones, simulates listening in a typically reverberant classroom. It comprises a frontal target talker speaking high-context sentences and six competing talkers at different apparent locations. The test is intended to be the first test used by audiologists (or speech pathologists) after pure tone hearing thresholds have been measures, if the person is reported to be having difficulty understanding speech in acoustically challenging situations. If the ToLD-U test indicates that the person's performance is outside the normal range of abilities for people of that age, then that is an indication that additional tests should be administered to discover whether the cause(s) lie in the domains of auditory processing (especially spatial processing disorder), cognition (especially memory and attention), language (especially cloze ability), recognition of individual speech sounds, or types of hearing loss that are not evident in the usual audiogram.
The data in this data set are the measured intelligibility scores for children and adults in Australia when listening to the Australian-accented version of ToLD-U, which was the first version created. These data are described more fully in the article by Dillon, Gaikwad, Cameron, Luengtaweekul, Buchholz & Cameron: <em>Development of the Test of Listening Difficulties - Universal (ToLD-U) and Australian normative data in children and adults.</em>
Also included is the statistics program, in R, that was used to analyse the data for that publication, which is currently under peer review.
DOI: 10.25949/25909876.v1
title: Test of Listening Difficulties - Universal (Data set)

description: The Test of Listening Difficulties - Universal (ToLD-U) is designed to evaluate the understanding of speech in a noisy, reverberant environment, using sentences comprised of words that are familiar to children from age 5 up. The test is a realistic speech-in-noise test designed to be sensitive to several causes of difficulty understanding speech in noise. The test, conducted under headphones, simulates listening in a typically reverberant classroom. It comprises a frontal target talker speaking high-context sentences and six competing talkers at different apparent locations. The test is intended to be the first test used by audiologists (or speech pathologists) after pure tone hearing thresholds have been measures, if the person is reported to be having difficulty understanding speech in acoustically challenging situations. If the ToLD-U test indicates that the person's performance is outside the normal range of abilities for people of that age, then that is an indication that additional tests should be administered to discover whether the cause(s) lie in the domains of auditory processing (especially spatial processing disorder), cognition (especially memory and attention), language (especially cloze ability), recognition of individual speech sounds, or types of hearing loss that are not evident in the usual audiogram.
The data in this data set are the measured intelligibility scores for children and adults in Australia when listening to the Australian-accented version of ToLD-U, which was the first version created. These data are described more fully in the article by Dillon, Gaikwad, Cameron, Luengtaweekul, Buchholz & Cameron: <em>Development of the Test of Listening Difficulties - Universal (ToLD-U) and Australian normative data in children and adults.</em>
Also included is the statistics program, in R, that was used to analyse the data for that publication, which is currently under peer review.
DOI: 10.15468/dl.7lksvs
title: Occurrence Download

description: A dataset containing 579817 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rumex acetosa L."
 ]
}

 The dataset includes 579817 records from 838 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011299-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5gyw2a
title: Occurrence Download

description: A dataset containing 117269 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Coleção Entomológica do Museu Nacional / UFRJ"
 ]
}

 The dataset includes 117269 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020682-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ptgdxz
title: Occurrence Download

description: A dataset containing 116772 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Plant Specimen from Herbarium (IBK) in China, Guangxi Institute of Botany, Chinese Academy of Sciences"
 ]
}

 The dataset includes 116772 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020683-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2eksze
title: Occurrence Download

description: A dataset containing 94281 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Vertical and horizontal environmental DNA (eDNA) patterns of fish in a shallow and well-mixed North Sea area"
 ]
}

 The dataset includes 94281 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020684-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jtyada
title: Occurrence Download

description: A dataset containing 740 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Girella punctata Gray, 1835",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 740 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013054-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xxx9hn
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Begonia woodii Merr.)"
 ]
}

 The dataset includes 10 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013057-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.huby8d
title: Occurrence Download

description: A dataset containing 2193 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mertensia lanceolata (Pursh) A.DC.",
 "Geometry POLYGON((-141 24, -53 24, -53 83, -141 83, -141 24))"
 ]
}

 The dataset includes 2193 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013058-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6gjvfj
title: Occurrence Download

description: A dataset containing 1003 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinctada mazatlanica (Hanley, 1856)"
 ]
}

 The dataset includes 1003 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013060-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14223004
title: AI4PROFHEALTH - Profession-health status co-occurrence graph statistics

description: This dataset contains the Pointwise Mutual Information (PMI) values for co-occurrence pairs between different mention categories extracted from two distinct clinical datasets: MESINESP2 and the Clinical Case Reports Collection. PMI is a statistical measure used to assess the strength of association between pairs of entities by comparing their observed co-occurrence to the expected frequency under the assumption of independence.

The datasets include PMI values for each co-occurrence pair, derived from the association of professions and clinical concepts, with the aim of identifying potential occupational health risks. By sharing these datasets, we aim to support further research into the relationships between professions and clinical entities, enabling the development of more accurate and targeted occupational health risk models.

There is a separate file for each corpus, and each dataset is provided in CSV format for easy access and analysis. These files include the PMI values for co-occurrence pairs extracted from the respective corpora, making them suitable for further data analysis.

Data Structure:



MESINESP2: mesinesp2_co-occurrence_pmi.zip

Clinical case reports: clinical_cases_co-occurrence_pmi.zip


The repository contains a .zip file for each of the corpus, each containing a .csv file with the co-occurrences between the detected professions and clinical entities. The file has the following columns order:



span_mention_1: Mention string (original): profession

normalized_entity_1: Controlled vocabulary entry for this term

mention1_category: Semantic class (i.e., NER label)

mention1_freq: Absolute frequency of this mention entity 1

span_mention_2: Mention string (original): entity 2 (disease, symptom, species, etc.)

normalized_entity_2: Controlled vocabulary entry for this term

mention2_category: Semantic class (i.e., NER label)

mention1_freq: Absolute frequency of this mention entity 2

co-occurrence: Number of co-occurrences

PMID: PMID value


Notes

This resource been funded by the Spanish National Proyectos I+D+i 2020 AI4ProfHealth project PID2020-119266RA-I00 (PID2020-119266RA-I0/AEI/10.13039/501100011033).

Contact

If you have any questions or suggestions, please contact us at:

- Miguel Rodríguez Ortega (<miguel [dot] rod [at] bsc [dot] com>)- Martin Krallinger (<krallinger [dot] martin [at] gmail [dot] com>)

Additional resources and corpora

If you are interested, you might want to check out these corpora and resources:



MEDDOPROF (Corpus of mentions of professions, occupations and working status and normalization, different document collection with some overlapping documents)

MESINESP-2 (Corpus of manually indexed records with DeCS /MeSH terms comprising scientific literature abstracts, clinical trials, and patent abstracts, different document collection)


 
description: This resource been funded by the Spanish National Proyectos I+D+i 2020 AI4ProfHealth project PID2020-119266RA-I00 (PID2020-119266RA-I0/AEI/10.13039/501100011033).