cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.56362
title: Modified Pool System Based On The Ieee Rts-96 System Incl. 39 Wind Power Producers

description: This is the data-set associated  with the numerical simulations in the paper "A. Papakonstantinou, P. Pinson, <em>Population Dynamics for Renewables in Electricity Markets: A Minority Game View</em>". The paper will be presented in 2016 International Conference on Probabilistic Methods Applied to Power Systems (PMAPS) in Oct. 16-20, 2016 in Beijing, China.

We modify the original data-set [1] by adding the marginal costs for conventional generation introduced by [2] and flexible generators capable of providing up and down regulation following [3].  The cost of up-regulation is assumed to be 10% higher than the day-ahead cost and the cost of down-regulation 9% less than the day-ahead ahead costs.

Furthermore, regarding stochastic generation, we assume zero marginal and cost free spilling action, while load shedding induces a cost of 1000 EUR/MWh. Finally, we assume that the total demand is at 80% of the conventional generation [3], while the total capacity of the 39 stochastic producers is at 30% of the demand.

Within the data file the specific data used for the analysis in the paper are under pes_input().

[1]  IEEE RTS Task Force of APM Subcommittee, “The ieee reliability test system-1996.” IEEE Transactions on Power Systems, vol. 14, no. 3, pp. 1010–1020, 1999.

[2]  D. Kirschen. Unit commitment data for modernized ieee rts-96. Accessed: 10-03-2016. [Online]. Available: http://www.ee.washington.edu/research/real/library.html

[3] A. J. Conejo, M. Carri ́on, and J. M. Morales, Decision Making Under Uncertainty in Electricity Markets. Springer, 2010.
description: The pre-print version of the paper is available for download at http://athpap.net/wp-content/uploads/2016/05/efbp4mg.pdf
description: {"references": ["[1]  IEEE RTS Task Force of APM Subcommittee, \u201cThe ieee reliability test system-1996.\u201d IEEE Transactions on Power Systems, vol. 14, no. 3, pp. 1010\u20131020, 1999.", "[2]  D. Kirschen. Unit commitment data for modernized ieee rts-96. Accessed: 10-03-2016. [Online]. Available: http://www.ee.washington.edu/research/real/library.html", "[3] A. J. Conejo, M. Carri \u0301on, and J. M. Morales, Decision Making Under Uncertainty in Electricity Markets. Springer, 2010."]}
DOI: 10.5281/zenodo.56406
title: Pancreatitis_Data

description: The dataset for adipokines study
DOI: 10.5281/zenodo.56422
title: Supplement For "Using Phylogenetic Networks To Model Chinese Dialect History"

description: This is the supplementary material accompanying the paper "Using Phylogenetic Networks to Model Chinese Dialect History", which appeared in 2014 in "Language Dynamics and Change" (volume 4, issue 2).
DOI: 10.5281/zenodo.637862
title: Data Used For Training Glioblastoma Nf1 Classifier

description: All data is publicly available and downloaded from UCSC Xena<br>
https://genome-cancer.ucsc.edu/proj/site/xena/datapages/?cohort=TCGA%20Pan-Cancer

Because the database is continously updated and to ensure reproducibility, access data from this cached download.

RNAseq and Clincal data were downloaded on 8 March 2016<br>
Mutation data was downloaded on 12 June 2015
DOI: 10.7946/p21595
title: Genomic variation for 104 rice elite cultivars, landraces and wild relatives

description: Genomic variation obtained from analysis of high throughput sequencing (HTS) illumina data for 94 varieties of Oryza sativa and 10 wild relatives from O. rufipogon and O. nivara. The 94 O. sativa varieties include 21 latin american elite cultivars from the CIAT rice breeding program, 33 north american elite cultivars from USDA, as well as 40 landraces and 10 wild relatives sequenced and previously analyzed (doi: 10.1038/nbt.2050). Raw sequencing data was analyzed using the NGSEP pipeline (http://sourceforge.net/projects/ngsep/). Details of the analysis and the main research outcomes obtained from these data can be found here (doi: 10.1371/journal.pone.0124617). SNPs and small indels for the 104 varieties are provided as a single VCF file, whereas predictions of copy number variation (CNVs), large indels and inversions are provided as one file per sample in GFF format.
DOI: 10.22021/bbldntz201610
title: The Linked Open British National Bibliography – Books. 1950/2016-10 – N-Triples
DOI: 10.22021/bbldrdfz201610
title: The Linked Open British National Bibliography – Books. 1950/2016-10 – RDF/XML
DOI: 10.22021/bsldntz201610
title: The Linked Open British National Bibliography – Serials. 1950/2016-10 – N-Triples
DOI: 10.22021/bsldrdfz201610
title: The Linked Open British National Bibliography – Serials. 1950/2016-10 – RDF/XML
DOI: 10.5281/zenodo.29551
title: Choreography2 Dataset

description: <strong>Presentation</strong>

This database contains choreography motions recorded through a kinect device. It contains a total of 1100 examples of 10 different gestures that are spanned over one or two limbs, either the legs (e.g. <em>walk</em>, <em>squat</em>), left or right arm (e.g. <em>wave hand</em>, <em>punch</em>) or both arms (e.g. <em>clap in hands</em>, <em>paddle</em>).

Each example (or record) contained in the dataset consists in two elements:


	the motion data,
	labels identifying which gesture is demonstrated.


<strong>Description of the data</strong>

The data has been acquired through a kinect camera and the OpenNI drivers through its ROS &lt;http://ros.org&gt; interface, which yields a stream of values of markers on the body.

Each example from the dataset is associated to a sequence of 3D positions of each of the 15 markers. Thus for a sequence of length T, the example would corresponds to T*15*7 values.

The position of the following list of markers was recorded:

<em>head</em>, <em>neck</em>, <em>left_hip</em>, <em>left_hip</em>, <em>left_shoulder</em>, <em>left_elbow</em>, <em>left_hand</em>, <em>left_knee</em>, <em>left_foot</em>, <em>right_hip</em>, <em>right_shoulder</em>, <em>right_elbow</em>, <em>right_hand</em>, <em>right_knee</em>, <em>right_foot</em>, <em>right_hand</em>

A list of gestures and their descriptions can be found at the end of this document.

<strong>For more information, see README.md.</strong>
DOI: 10.5281/zenodo.29600
title: Hac Features And Metadata For The Acorns Caregiver Dataset

description: Histograms of co-occurence features from the Caregiver dataset.

Each files contains the features corresponding to one speaker. The features were extracted using matlab code from the ACORNS project, except for the ones postfixed with "_python" that were extracted with code from http://github.com/omangin/multimodal/features/hac.py.

The .json files contains metadata for the the datasets. See http://github.com/omangin/multimodal/db/models/acorns.py for more information on the format.

For more information and data, the English part of the ACORNS CAREGIVER corpus is available from the language archive (TLA -MPI for psycholinguistics Nijmegen) for reproducibility and transparency reasons in accordance with the agreements that were obtained from the speakers. Visit the following link for the corpus: https://corpus1.mpi.nl/ds/asv/;jsessionid=0717131F4474EDF6A9002460E8921321?0&openhandle=hdl:1839/00-0000-0000-001A-D60B-1

Information on permissions for using the corpus at http://dx.doi.org/10.1371/journal.pone.0132245
description: {"references": ["Altosaar, Toomas et al. \"A Speech Corpus for Modeling Language Acquisition: CAREGIVER\" Language Resources and Evaluation - LREC (2008)", "Boves, Lou et al. \"ACORNS---towards computational modeling of communication and recognition skills\" Cognitive Informatics, 6th IEEE International Conference on (2007)", "Modelling the Noise-Robustness of Infants\u2019 \"Word Representations: The Impact of Previous Experience\" Bergmann C, Bosch Lt, Fikkert P, Boves L (2015) PLoS ONE 10(7): e0132245. doi: 10.1371/journal.pone.0132245"]}
DOI: 10.5281/zenodo.29602
title: Histograms Of Angles Features For The Choreography2 Dataset

description: Histograms of angles features for the choreography2 dataset.

See https://github.com/omangin/multimodal/blob/master/features/angle_histograms.py.

Mangin, P.Y. Oudeyer, <strong>Learning semantic components from sub symbolic multi modal perception</strong><em>to appear in the Joint IEEE International Conference on Development and Learning an on Epigenetic Robotics (ICDL EpiRob)</em>, Osaka (Japan) (2013) (More information, bibtex)
description: {"references": ["Mangin, P.Y. Oudeyer, Learning semantic components from sub symbolic multi modal perception to appear in the Joint IEEE International Conference on Development and Learning an on Epigenetic Robotics (ICDL EpiRob), Osaka (Japan) (2013) (More information, bibtex)"]}
DOI: 10.5281/zenodo.29607
title: Histograms Of Local Features For The Object Dataset

description: Pictures used in the experiments were acquired as frames from an interaction with an iCub robot, through an RGBD sensor (red, green, and blue camera coupled with a depth sensor). The acquisition was performed and is described in more details by Lyubova and Filliat. Each image contains one visual object and possibly the hand of the operator.

<br>
Images contains objects from a subset of 10 objects each appearing in more than a thousand frames.During the acquisition, the objects are moved and rotated. Hence they are presented from distinct points of view and they may be partially cluttered by the hand of the operator.

 

For more information on the format please look at https://github.com/omangin/multimodal/blob/master/db/models/objects.py.
description: {"references": ["Lyubova, Natalia and Filliat, David \"Developmental Approach for Interactive Object Discovery\" Proceedings of the 2012 IJCNN International Joint Conference on Neural Networks (2012)"]}
DOI: 10.5281/zenodo.29887
title: A Crowdsourced Chemical-Induced Disease Relation Corpus

description: A sentence-bound chemical-induced disease relation corpus was produced with crowdsourcing as part of the BioCreative V challenge.
DOI: 10.5281/zenodo.29893
title: A Crowdsourced Sentence-Bound Chemical-Induced Disease Relationship Corpus

description: A set of 3000 abstracts from PubMed were annotated for sentence-bound chemical-induced disease relationships in order to train a machine learning algorithm for the BioCreative V challenge.
DOI: 10.5281/zenodo.45810
title: Time Independent Traces From Nas Mpi Benchmarks (Lu,Is,Ft)

description: Time independent traces from NAS MPI benchmarks (LU,IS,FT) that runs on Grid'5000 testbed on the graphene cluster (node 105 to143) using a dedicated switch (no network contention) and with 1 MPI process per node.

These traces are made to be used by a distributed system simulator to replay the jobs executions.
DOI: 10.5281/zenodo.45855
title: Orthology Guided Transcriptome Assembly Of Italian Ryegrass And Meadow Fescue For Single Nucleotide Polymorphisms Discovery (Data Set)

description: Transcriptome sequencing was performed on ten samples (corresponding to six genotypes) of <em>Festuca pratensis</em> and ten samples (corresponding to six genotypes) of <em>Lolium multiflorum</em> and fourteen samples of<em> Lolium perenne</em> (corresponding to fourteen genotypes). Using the OGA approach, 18,952 non-redundant <em>F. pratensis</em> transcripts were assembled by combining the contigs of all six genotypes based on orthology with the <em>Brachypodium distachyon </em>proteome. Similarly, <em>19,036</em> non-redundant<em> L. multiflorum</em> transcripts were assembled and annotated. In total, 17,455 orthologous transcripts were shared between the transcriptomes of the two species. Out of these, 16,613 orthologous transcripts overlap with the previously published<em> L. perenne</em> transcriptome containing 19,279 non-redundant transcripts(fasta files). We identified SNPs, the following criteria were used to classify it as one of following three classes (1) intraspecific SNPs (INTRA), (2) interspecific SNPs in two-way comparison (INTER-2W) and (3) interspecific SNPs in three-way comparison (INTER-3W) (GFF files).
DOI: 10.5281/zenodo.45900
title: Chromnet Data Bundle Build 3

description: Contains the ChromNet processed version of all ENCODE ChIP-seq data.
DOI: 10.5281/zenodo.45901
title: Hacker News Curated Comments Dataset

description: A curated dataset from fh-bigquery:hackernews.stories

Only HN stories with more than 10 comments are included, and only comments from users with more than 10 comments are included.
DOI: 10.5281/zenodo.45922
title: Raw Data For: Tunable Fibre-Coupled Multiphoton Microscopy With A Negative Curvature Fibre

description: Raw data files for publication "Tunable fibre-coupled multiphoton microscopy with a negative curvature fibre" in Journal of Biophotonics 2016
DOI: 10.5281/zenodo.45941
title: Virus-Host Diversity And Interactions In The Juan De Fuca Ridge Flank Deep Biosphere

description: Fasta files from sequenced Single Amplified Virus Genomes originated from hydrothermal fluids collected from the IODP Hole<br>
U1362B CORK observatory in 2011during cruise AT18-07 on the RV Atlantis with ROV Jason (chief scientist A. Fisher; cruise report available online on the C-DEBI website: http://www.darkenergybiosphere.org/research/juandefuca.html).
description: Please contact Joaquín Martínez Martínez (jmartinez@bigelow.org) for further information
DOI: 10.5281/zenodo.56475
title: The Correlation Between Maternal Malnutrition And Neonatal Outcomes At Mbagathi Hospital Kenya

description: The data was collected at Mbagathi hospital in Kenya
DOI: 10.5281/zenodo.56480
title: Influence Of Volatile Anesthesia On The Release Of Glutamate And Other Amino Acids In The Nucleus Accumbens Of Alcohol-Withdrawn Rats

description: An alcohol withdrawal syndrome is a potentially life-threatening condition, which may occur when patients with alcohol use disorders have to undergo general anesthesia. Excitatory amino acids, such as glutamate, act as neurotransmitters and play a key role in alcohol withdrawal. We investigated the influence of isoflurane, sevoflurane, and desflurane anesthesia on the profile of excitatory and inhibitory amino acids in the Nucleus accumbens (NAcc) of alcohol-withdrawn rats (AWR).

80 Wistar rats were randomized into two groups of 40, pair-fed with alcoholic or non-alcoholic nutrition. Nutrition was withdrawn and microdialysis trials were performed to measure the activity of amino acids in the NAcc. The withdrawal onset time was determined in a first trial with 20 rats. 60 rats then received isoflurane, sevoflurane, or desflurane anesthesia for three hours during withdrawal period, followed by one hour of elimination. Amino acid concentrations were obtained by chromatography. Quantification was done by integration and analysis of the area under the curve (AUC).
DOI: 10.5281/zenodo.56515
title: Retinal Status Analysis Method Based On Feature Extraction And Quantitative Grading In Oct Images

description: The raw database includes 200 retinal OCT images judged as normal by ophthalmologists and 100 images with various abnormalities. The software includes the main steps for retinal status analysis. The software was carried out in Matlab.
DOI: 10.5281/zenodo.56529
title: A Novel Method For Evaluation Of Problem Solving Among Anesthesiologists

description: Data used in accordance to validation of the CRT items which could be used to evaluate medical decision making among physicians (namely, anesthesiologists) working in emergency departments.
DOI: 10.5281/zenodo.56536
title: Fwf-Förderungsstatistiken 2009-2015

description: Zusammenstellung der Förderdaten aus den Jahresberichten des FWF (Fonds zur Förderung der wissenschaftlichen Forschung) als Längsschnittdaten 2009-2015
DOI: 10.5281/zenodo.56573
title: Borrelia Strain Diversity

description: Simulated sequence data for testing Bb strain diversity method, all in FASTQ format.


	Included are read sets from 3 whole genomes (B31, JD1, N40) x 10 replicates of each. B31_01_R1.fq.bz1 (Genome B31, replicate 1, read 1).  These files are  compressed with http://www.linfo.org/bzip2.html and can be decompressed with bzip2 -d <em>file.bz2 .  </em>
	Also included are reads from all 32 ospC types and subtypes (single replicate of each, uncompressed).
	Mixes of reads from ospC types are also included.  They are named according to the genotypes and fractions they contain: BA.01.99_ospC_1.fq is 1% ospC type B, 99% ospC type A for example, and contains the 1st read pair of the paired FASTQ reads (the paired reads are in the file BA.01.99_ospC_2.fq).
DOI: 10.5281/zenodo.832490
title: Transcripts Of 28 Interviews With Researchers Who Fabricated Data For An Experiment

description: For an experiment we recently conducted, we asked researchers to fabricate data for a Stroop experiment. The purpose of this experiment was to test whether we could use statistics to discern the fabricated data from genuine data we collected from Many Labs 3. We also interviewed the researchers about how they fabricated data, in order to learn how researchers actually fabricate data. We share these transcripts here for maximum reuse under a CC 0 license.
description: This research was funded by the Office of Research Integrity (ORI; hhs.ori.gov), grant number ORIIR160019 awarded to Chris HJ Hartgerink.
DOI: 10.5281/zenodo.832491
title: Transcripts Of 28 Interviews With Researchers Who Fabricated Data For An Experiment

description: For an experiment we recently conducted, we asked researchers to fabricate data for a Stroop experiment. The purpose of this experiment was to test whether we could use statistics to discern the fabricated data from genuine data we collected from Many Labs 3. We also interviewed the researchers about how they fabricated data, in order to learn how researchers actually fabricate data. We share these transcripts here for maximum reuse under a CC 0 license.
description: This research was funded by the Office of Research Integrity (ORI; hhs.ori.gov), grant number ORIIR160019 awarded to Chris HJ Hartgerink.
DOI: 10.5281/zenodo.30084
title: Eeg Data For P300 Speller

description: These EEG signals were recorded during a P300 speller paradigm.<br>
Number of subjects: 10<br>
Number of channels: 19<br>
Number of sessions/subject:4

------------------------------------------------------------------------------------------------------------------

Each session has duration of 10 minutes, and is consisted of 14 runs (14 characters).<br>
After each run, there was a pause of 3s, and during this time the matrix was blank.

<br>
•    The first session consisted of a series of separated characters, ordered in the following sequence:<br>
ض – س – ق – ل – ع – ن – ح – م – أ – ت – و – ر – ب – ه) )<br>
•    The second session also consisted of a series of separated characters, ordered in the following sequence:<br>
ذ – خ – ص – ي – د – ث – ف – غ – ج – ظ – ك – ش – ز – ط ) )<br>
•    The third session consisted of short words:<br>
طب - قف - عن - يد - كتب – لغة ) )<br>
•    The fourth session consisted of one long word:<br>
فأستسقيناكموها ) )

<br>
-------------------------------------------------------------------------------------------------------------------

EEG signals were performed at MAZLOUM hospital, Tripoli, Lebanon.
DOI: 10.5281/zenodo.30279
title: Molecular Analysis Of Bacterial Microbiota On Brazilian Currency Note Surfaces

description: MiSeq forward and reverse reads paired reads of the V4 region of the 16S rRNA gene. Data were generated from banknotes involving five denominations (2, 5, 10, 20, and 50), 30 notes each. Currency were randomly collected from three different street markets or "feiras" in the <em>metropolitan</em> region of <em>São Paulo.</em>
DOI: 10.5281/zenodo.45969
title: Imp Html Reports (Preprint)

description: ZIP file contains the HTML files which are referred to as the "Additional file 1" in the IMP manuscript.<br>
DOI: 10.5281/zenodo.46018
title: Q&A Dataset Of Naver Kin Here

description: We crawled the publicly accessible local questions and answers on Naver KiN Here from December 17, 2012 to December 31, 2013; a total of 508,334 questions and 567,156 answers were obtained. NKH questions are accessible on the web since web users can also answer the questions. However, the site only lists the questions that are less than one month old, and thus, we scraped the question listing pages in every other week. The collected URLs were then used to download the question pages, which contain all the answerers. For the given dataset, we extracted a set of associated items for analysis including  user information  (e.g., ID, the question closing rate and answer acceptance rate), title, content, posted time, categorized region, posted coordinate (i.e., latitude, longitude). Similarly, we extracted all the fields of each answer (e.g., answerer ID, posted time, answerer status information). For field extraction, we manually investigated the page format in HTML to write a parser code with regular expressions.
DOI: 10.5281/zenodo.46082
title: Denoising Autoencoders For Phenotype Stratification (Daps) Sample Simulated Patient Data

description: Generated with https://github.com/greenelab/DAPS/
DOI: 10.5281/zenodo.46152
title: Dppc_Berger_Opls06_Nacl_1Mol

description: MD simulation trajectory and related files for fully hydrated DPPC bilayer with 1 M NaCl. The OPLSAA-compatible Berger-DPPC-06 force field (DOI:10.1088/0953--8984/18/28/S07) was used with Gromacs 5.0.4. Ions were described by the Åqvist parameters. Conditions: T=323K, 72 lipids, 2778 SPC waters, 51 Na, 51 Cl. 120 ns trajectory, last 60 ns analyzed.
description: Re-uploaded version of (https://zenodo.org/record/17208) to also include ".tpr" file.
DOI: 10.5281/zenodo.56626
title: Dataset For Article:  Luque-Casado, A., Perakakis, P., Ciria, L.F., Sanabria, D. (2016). Transient Autonomic Responses During Sustained Attention In High And Low Fit Young Adults. Sci. Rep. 6, 27556

description: Dataset for article:

Luque-Casado, A., Perakakis, P., Ciria, L.F., Sanabria, D. (2016). Transient autonomic responses during sustained attention in high and low fit young adults. Sci. Rep. 6, 27556
DOI: 10.5281/zenodo.56693
title: Oyster Ipm Data

description: Data used in:

Moore, J. L., Lipcius, R. N., Puckett, B. and Schreiber, S. J. (2016), The demographic consequences of growing older and bigger in oyster populations. Ecol Appl. Accepted Author Manuscript. doi:10.1002/eap.1374
DOI: 10.5281/zenodo.56735
title: Data Used For Training Glioblastoma Nf1 Classifier

description: All data is publicly available and downloaded from UCSC Xena<br>
https://genome-cancer.ucsc.edu/proj/site/xena/datapages/?cohort=TCGA%20Pan-Cancer

Because the database is continously updated and to ensure reproducibility, access data from this cached download.

RNAseq and Clincal data were downloaded on 8 March 2016<br>
Mutation data was downloaded on 12 June 2015
DOI: 10.5281/zenodo.16816
title: Cranial Ct Scan, Astrocytoma Patient After Recent Tumor Removal Surgery

description: A cranial CT scan from a patient with an astrocytoma brain tumor surgically removed August 19, 2014. Scan taken November 19, 2014. Patient: Steven Keating. Patient age: 26 at time of scan. Open access (CC0) with approval from patient. More information available on patient at www.stevenkeating.info.
DOI: 10.5281/zenodo.16830
title: Md Simulation Trajectories Of Glycerol For Different Popc/Cholesterol Concentrations (0,10,15,20,25,35,50%). Charmm36, Gromacs 4.6.3. 2014.

description: MD simulation trajectories files, for fully hydrated POPC + CHOLESTEROL bilayer. The CHARMM36 force field was used with Gromacs 4.6.3. Conditions: T=298K and different cholesterol concentrations described in the name of each file. 170 ns each trajectory, last 100 ns analyzed.
description: Because of the system size, the files ONLY contain the coordinates of Glycerol saved every 10ps, this is the real contribution to the nmrlipids project.
DOI: 10.5281/zenodo.30284
title: Genomicinteractions: An R/Bioconductor Package For Manipulating And Investigating Chromatin Interaction Data.

description: Files required to regenerate figures in main text of paper, using existing Supplemental R Markdown files.
DOI: 10.5281/zenodo.30402
title: Lu_Example_Float#Cpus:1#Gpus:2.25.Paje.Trace

description: File: lu_example_float#CPUs:1#GPUs:2.25.paje.trace