cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7159556
title: A review on the current situation and challenges of colistin resistance in poultry production

description: Colistin has been re-assessed as a critically important antimicrobial in humans due to its efficacy against multi-drug resistant Gram-negative bacteria, in particular <i>P. aeruginosa</i>, <i>A. baumannii</i>, and <i>K. pneumoniae</i>. The recent discovery of mobile colistin resistance (mcr) determinants in humans and animals has brought concerns regarding the future of this antimicrobial. In this paper, we aim to highlight the current challenges with colistin resistant bacteria and to summarize reliable global data on colistin resistance in poultry production. In addition, we present and compare data from a screening for colistin resistance carried out on a collection of clinical <i>Escherichia coli</i> isolated from poultry in Italy. In Europe, resistance rates for <i>Salmonella</i> and <i>E. coli</i> are in general low with sporadic incidence of high colistin resistance levels. Absence of resistance or very low rates have been recorded in countries where colistin is either not employed (e.g. Norway) or used in minimal amounts (e.g. Denmark) in food-producing animals. In large poultry meat producing countries, such as China and Brazil, the widespread use of colistin has resulted in the dissemination of resistance determinants in diverse bacterial species. Worryingly, these bacteria are often co-resistant to other critically important antimicrobials, such as extended-spectrum cephalosporins. The data gap for many countries and for zoonotic bacteria, the role of the “phantom resistome” and the circulation of <i>mcr</i>-carriers expressing resistance phenotypes close or below the current ECOFF values, should be considered in future investigations. The importance of poultry as a cheap protein source and the global effort to mitigate colistin resistance and preserve this essential antimicrobial require a thorough re-assessment of colistin use in poultry.
DOI: 10.6084/m9.figshare.7159556.v1
title: A review on the current situation and challenges of colistin resistance in poultry production

description: Colistin has been re-assessed as a critically important antimicrobial in humans due to its efficacy against multi-drug resistant Gram-negative bacteria, in particular <i>P. aeruginosa</i>, <i>A. baumannii</i>, and <i>K. pneumoniae</i>. The recent discovery of mobile colistin resistance (mcr) determinants in humans and animals has brought concerns regarding the future of this antimicrobial. In this paper, we aim to highlight the current challenges with colistin resistant bacteria and to summarize reliable global data on colistin resistance in poultry production. In addition, we present and compare data from a screening for colistin resistance carried out on a collection of clinical <i>Escherichia coli</i> isolated from poultry in Italy. In Europe, resistance rates for <i>Salmonella</i> and <i>E. coli</i> are in general low with sporadic incidence of high colistin resistance levels. Absence of resistance or very low rates have been recorded in countries where colistin is either not employed (e.g. Norway) or used in minimal amounts (e.g. Denmark) in food-producing animals. In large poultry meat producing countries, such as China and Brazil, the widespread use of colistin has resulted in the dissemination of resistance determinants in diverse bacterial species. Worryingly, these bacteria are often co-resistant to other critically important antimicrobials, such as extended-spectrum cephalosporins. The data gap for many countries and for zoonotic bacteria, the role of the “phantom resistome” and the circulation of <i>mcr</i>-carriers expressing resistance phenotypes close or below the current ECOFF values, should be considered in future investigations. The importance of poultry as a cheap protein source and the global effort to mitigate colistin resistance and preserve this essential antimicrobial require a thorough re-assessment of colistin use in poultry.
DOI: 10.7284/104099
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS0922 using a Raytheon 300 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7159541
title: XPS data

description: XPS data of fracture surfaces and surfaces with freshly prepared MPTMS
DOI: 10.7284/104100
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS0922 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7159529
title: Microscopy

description: Coverage of wrinkles and voids on the Cu fracture surfaces and the images.
DOI: 10.6084/m9.figshare.7159523
title: Changes in bone density and bone quality caused by single short-term severe fasting in rats

description: These data file (ATG file) obtained from X-ray CT system (Latheta LCT-100, Hitachi Aloka Medical Co. Ltd., Japan) . In this experiment, we were photographed images of lumbar vertebrae of male Wister rats with fasting and refeeding, and observed the effect of fasting on bone. The fasting period was 4 days, after that the refeeding period was 8 days. These data were analyzed by using Latheta software ver. 3.0 (Hitachi-Aloka Medical Ltd., Japan), and the parameters related to fragility of bone were calculated.The Excel file is a correspondence table of these image data.
DOI: 10.6084/m9.figshare.7159529.v1
title: Microscopy

description: Coverage of wrinkles and voids on the Cu fracture surfaces and the images.
DOI: 10.7284/104101
title: Gyrocompass data collected during research cruise WS0922 using a SGB Meridian instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7159523.v1
title: Changes in bone density and bone quality caused by single short-term severe fasting in rats

description: These data file (ATG file) obtained from X-ray CT system (Latheta LCT-100, Hitachi Aloka Medical Co. Ltd., Japan) . In this experiment, we were photographed images of lumbar vertebrae of male Wister rats with fasting and refeeding, and observed the effect of fasting on bone. The fasting period was 4 days, after that the refeeding period was 8 days. These data were analyzed by using Latheta software ver. 3.0 (Hitachi-Aloka Medical Ltd., Japan), and the parameters related to fragility of bone were calculated.The Excel file is a correspondence table of these image data.
DOI: 10.6084/m9.figshare.7159514
title: Dataset containing genotype data for single nucleotide polymorphism markers in sporadic breast cancer related genes in a Sri Lankan case-control cohort of postmenopausal women

description: This dataset consists of three Excel spreadsheets in .xlsx format, containing the raw genotype data of a study which investigated the association of single nucleotide polymorphisms (SNPs) in breast cancer related genes with the risk and clinicopathological profiles of sporadic breast cancer among Sri Lankan postmenopausal women. A case-control study design was adopted to conduct SNP marker disease association testing using single variant and haplotype association testing strategies in an existing blood resource obtained from a cohort of Sri Lankan postmenopausal women with clinically phenotyped sporadic breast cancer and healthy controls. The list of haplotype-tagging SNP markers for genotyping was selected based on the information available in the published literature and the use of bioinformatics tools and databases. During the study, 350 Sri Lankan postmenopausal women with histopathologically confirmed invasive breast cancer (cases), and 350 healthy postmenopausal women (controls) were genotyped for 57 haplotype-tagging single nucleotide polymorphisms (SNPs) in 36 candidate genes associated with sporadic breast cancer using the iPLEX Sequenom Mass-Array platform. The dataset contains the following files: <b>Data file 1_Genotypes_cases.xlsx</b> consists of a single spreadsheet, containing the raw genotype data for the 57 SNPs in the 350 postmenopausal women with sporadic breast cancer (cases). <b>Data file 2_Genotypes_controls.xlsx </b>consists of a single spreadsheet, containing raw genotype data for the 57 SNPs for 350 healthy postmenopausal women (controls). <b>Datafile 3_Primer Sequences </b>consists of a single spreadsheet, containing the primer sequences used to amplify each of the 57 SNPs. The <b>.xlsx</b> files can be opened using Microsoft Excel or any open spreadsheet software.
DOI: 10.6084/m9.figshare.7159514.v1
title: Dataset containing genotype data for single nucleotide polymorphism markers in sporadic breast cancer related genes in a Sri Lankan case-control cohort of postmenopausal women

description: This dataset consists of three Excel spreadsheets in .xlsx format, containing the raw genotype data of a study which investigated the association of single nucleotide polymorphisms (SNPs) in breast cancer related genes with the risk and clinicopathological profiles of sporadic breast cancer among Sri Lankan postmenopausal women. A case-control study design was adopted to conduct SNP marker disease association testing using single variant and haplotype association testing strategies in an existing blood resource obtained from a cohort of Sri Lankan postmenopausal women with clinically phenotyped sporadic breast cancer and healthy controls. The list of haplotype-tagging SNP markers for genotyping was selected based on the information available in the published literature and the use of bioinformatics tools and databases. During the study, 350 Sri Lankan postmenopausal women with histopathologically confirmed invasive breast cancer (cases), and 350 healthy postmenopausal women (controls) were genotyped for 57 haplotype-tagging single nucleotide polymorphisms (SNPs) in 36 candidate genes associated with sporadic breast cancer using the iPLEX Sequenom Mass-Array platform. The dataset contains the following files: <b>Data file 1_Genotypes_cases.xlsx</b> consists of a single spreadsheet, containing the raw genotype data for the 57 SNPs in the 350 postmenopausal women with sporadic breast cancer (cases). <b>Data file 2_Genotypes_controls.xlsx </b>consists of a single spreadsheet, containing raw genotype data for the 57 SNPs for 350 healthy postmenopausal women (controls). <b>Datafile 3_Primer Sequences </b>consists of a single spreadsheet, containing the primer sequences used to amplify each of the 57 SNPs. The <b>.xlsx</b> files can be opened using Microsoft Excel or any open spreadsheet software.
DOI: 10.7284/104095
title: INS (Inertial Navigation System) data collected during research cruise WS0922 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104102
title: Radiometer data collected during research cruise WS0922 using a Eppley PSP instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104103
title: Radiometer data collected during research cruise WS0922 using a Eppley TUV instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104108
title: Radiometer data collected during research cruise WS0922 using a Eppley PIR instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104107
title: Rain Gauge data collected during research cruise WS0922 using a OSI ORG-815 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104109
title: Singlebeam Echosounder data collected during research cruise WS0922 using a Knudsen 320B/P instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104104
title: Water Temperature data collected during research cruise WS0922 using a Sea-Bird SBE-38 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104105
title: TSG (Thermosalinograph) data collected during research cruise WS0922 using a Sea-Bird SBE-45 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104106
title: Winch data collected during research cruise WS0922 using a General Oceanics DT1020 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104112
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS0923 using a RDI BB-600 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104113
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS0923 using a RDI OS-75 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104111
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise WS0923 using a Sea-Bird SBE-911+ instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104114
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS0923 using a Raytheon 300 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104115
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS0923 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104116
title: Gyrocompass data collected during research cruise WS0923 using a SGB Meridian instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104110
title: INS (Inertial Navigation System) data collected during research cruise WS0923 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104117
title: Radiometer data collected during research cruise WS0923 using a Eppley PSP instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104118
title: Radiometer data collected during research cruise WS0923 using a Eppley TUV instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104123
title: Radiometer data collected during research cruise WS0923 using a Eppley PIR instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7159358
title: Additional file 4: of Hidden in plain sightâ highly abundant and diverse planktonic freshwater Chloroflexi

description: Table S3. Metagenomic datasets used in this study. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.7159358.v1
title: Additional file 4: of Hidden in plain sightâ highly abundant and diverse planktonic freshwater Chloroflexi

description: Table S3. Metagenomic datasets used in this study. (XLSX 30 kb)
DOI: 10.7284/104122
title: Rain Gauge data collected during research cruise WS0923 using a OSI ORG-815 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7159349
title: Additional file 3: of Hidden in plain sightâ highly abundant and diverse planktonic freshwater Chloroflexi

description: Table S2. Metabolic overview of the freshwater Chloroflexi. (XLSX 144 kb)
DOI: 10.6084/m9.figshare.7159349.v1
title: Additional file 3: of Hidden in plain sightâ highly abundant and diverse planktonic freshwater Chloroflexi

description: Table S2. Metabolic overview of the freshwater Chloroflexi. (XLSX 144 kb)
DOI: 10.7284/104124
title: Singlebeam Echosounder data collected during research cruise WS0923 using a Knudsen 320B/P instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104119
title: Water Temperature data collected during research cruise WS0923 using a Sea-Bird SBE-38 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7159334
title: Additional file 2: of Hidden in plain sightâ highly abundant and diverse planktonic freshwater Chloroflexi

description: Table S1. Metagenome assembled genomes statistics. (XLSX 12 kb)
DOI: 10.7284/104120
title: TSG (Thermosalinograph) data collected during research cruise WS0923 using a Sea-Bird SBE-45 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7159334.v1
title: Additional file 2: of Hidden in plain sightâ highly abundant and diverse planktonic freshwater Chloroflexi

description: Table S1. Metagenome assembled genomes statistics. (XLSX 12 kb)
DOI: 10.7284/104121
title: Winch data collected during research cruise WS0923 using a General Oceanics DT1020 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104127
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS1001 using a RDI BB-600 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104128
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS1001 using a RDI OS-75 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7159313
title: Additional file 1: of The easy-to-hard training advantage with real-world medical images

description: Supplementary material experiment_2_results. (XLSX 1040 kb)
DOI: 10.7284/104129
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1001 using a Raytheon 300 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7159313.v1
title: Additional file 1: of The easy-to-hard training advantage with real-world medical images

description: Supplementary material experiment_2_results. (XLSX 1040 kb)
DOI: 10.7284/104130
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1001 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104131
title: Gyrocompass data collected during research cruise WS1001 using a SGB Meridian instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104125
title: INS (Inertial Navigation System) data collected during research cruise WS1001 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104132
title: Radiometer data collected during research cruise WS1001 using a Eppley PSP instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104133
title: Radiometer data collected during research cruise WS1001 using a Eppley TUV instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104138
title: Radiometer data collected during research cruise WS1001 using a Eppley PIR instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104137
title: Rain Gauge data collected during research cruise WS1001 using a OSI ORG-815 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104139
title: Singlebeam Echosounder data collected during research cruise WS1001 using a Knudsen 320B/P instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104134
title: Water Temperature data collected during research cruise WS1001 using a Sea-Bird SBE-38 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104135
title: TSG (Thermosalinograph) data collected during research cruise WS1001 using a Sea-Bird SBE-45 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104136
title: Winch data collected during research cruise WS1001 using a General Oceanics DT1020 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104142
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS1002 using a RDI BB-600 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104143
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS1002 using a RDI OS-75 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104144
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1002 using a Raytheon 300 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104145
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1002 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104146
title: Gyrocompass data collected during research cruise WS1002 using a SGB Meridian instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104140
title: INS (Inertial Navigation System) data collected during research cruise WS1002 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition