cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18695037
title: Linked collectors and determiners for: A multidisciplinary approach reveals a new species of glassfrog from Colombia (Anura: Centrolenidae: Nymphargus).

description: Natural history specimen data linked to collectors and determiners held within, "A multidisciplinary approach reveals a new species of glassfrog from Colombia (Anura: Centrolenidae: Nymphargus)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/f6295b7f-0136-4fe3-b6e0-9912fd245b28 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/f6295b7f-0136-4fe3-b6e0-9912fd245b28. Formatted as a Frictionless Data package.
DOI: 10.25549/rbm-c58-16470
title: Semi-nude female getting on and off a table

description: Semi-nude female getting on and off a table. This is plate 513, captioned "Getting on and off a table" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-16472
title: Semi-nude female getting on and off a table

description: Semi-nude female getting on and off a table. This is plate 513, captioned "Getting on and off a table" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-16479
title: Semi-nude female getting on and off a table

description: Semi-nude female getting on and off a table. This is plate 513, captioned "Getting on and off a table" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.5281/zenodo.14339232
title: Pairwise graph edit distance characterizes the impact of the construction method on pangenome graphs

description: Graph edition is a vastly studied subject, with many heuristics to compare topologies, and many NP-hard problems. Here, we present a method, relying on the specificities of what a pangenome graph is (a collection of subsequences linked by edges, that represents the embedding of genomes inside a graph structure) to formulate a O(n) solution in this specific case. It allows us to pinpoint dissimilarities between graphs, and we can analyse how such graphs differ when build with different tools, or parameters.

Data description:

Files `mgc_yeast_1` and `pggb_yeast_1`:

These files are the ones referenced in Tab. 1. The `.gfa` file is the graph file and the `.vcf` file is the variant file, obtained using `vg deconstruct`.

Archive `yeast_dataset`:

Contains the raw `.fasta` genomes used to build the yeast chromosome 1 graphs described in the publication.

Archive `json_datasets_results`:

Contains the computed distance, variants, and sequence complexity analysis results as `.json` files. 

Archive `human_data`:

Contains the human graphs (chromosome 1 and 21) referenced in Tab. 1. as well as the `.vcf` files. Human graphs are directly taken from Liao et al. 2023. The Minigraph-Cactus graph is the `.full.og` version of the CHM13-based pangenome and did undergo a conversion in `odgi` to `.gfa` then was given to `vg` to obtain a GFA1.0 file.

Archive `reference_impact`:

Contains the `.gfa` graphs used for the comparison of the impact of the reference choice against the secondary genome order in Minigraph-Cactus (fig 1A of the article).

Warning: all graphs are given as they came out of the Minigraph-Cactus and PGGB pipelines. It means, as `rs-pancat-compare` can compare only GFA1.0 that you must perform conversion using the `vg toolkit` (see commands available on this GitHub).

Archive `mgc_vs_pggb`:

Contains the `.gfa` graphs used for the comparison of the impact of the reference choice in Minigraph-Cactus against PGGB (fig 1B of the article).

Warning: all graphs are given as they came out of the Minigraph-Cactus and PGGB pipelines. It means, as `rs-pancat-compare` can compare only GFA1.0 that you must perform conversion using the `vg toolkit` (see commands available on this GitHub)
DOI: 10.5281/zenodo.10932489
title: Pairwise graph edit distance characterizes the impact of the construction method on pangenome graphs

description: Graph edition is a vastly studied subject, with many heuristics to compare topologies, and many NP-hard problems. Here, we present a method, relying on the specificities of what a pangenome graph is (a collection of subsequences linked by edges, that represents the embedding of genomes inside a graph structure) to formulate a O(n) solution in this specific case. It allows us to pinpoint dissimilarities between graphs, and we can analyse how such graphs differ when build with different tools, or parameters.

Data description:

Files `mgc_yeast_1` and `pggb_yeast_1`:

These files are the ones referenced in Tab. 1. The `.gfa` file is the graph file and the `.vcf` file is the variant file, obtained using `vg deconstruct`.

Archive `yeast_dataset`:

Contains the raw `.fasta` genomes used to build the yeast chromosome 1 graphs described in the publication.

Archive `json_datasets_results`:

Contains the computed distance, variants, and sequence complexity analysis results as `.json` files. 

Archive `human_data`:

Contains the human graphs (chromosome 1 and 21) referenced in Tab. 1. as well as the `.vcf` files. Human graphs are directly taken from Liao et al. 2023. The Minigraph-Cactus graph is the `.full.og` version of the CHM13-based pangenome and did undergo a conversion in `odgi` to `.gfa` then was given to `vg` to obtain a GFA1.0 file.

Archive `reference_impact`:

Contains the `.gfa` graphs used for the comparison of the impact of the reference choice against the secondary genome order in Minigraph-Cactus (fig 1A of the article).

Warning: all graphs are given as they came out of the Minigraph-Cactus and PGGB pipelines. It means, as `rs-pancat-compare` can compare only GFA1.0 that you must perform conversion using the `vg toolkit` (see commands available on this GitHub).

Archive `mgc_vs_pggb`:

Contains the `.gfa` graphs used for the comparison of the impact of the reference choice in Minigraph-Cactus against PGGB (fig 1B of the article).

Warning: all graphs are given as they came out of the Minigraph-Cactus and PGGB pipelines. It means, as `rs-pancat-compare` can compare only GFA1.0 that you must perform conversion using the `vg toolkit` (see commands available on this GitHub)
DOI: 10.25549/rbm-c58-21255
title: Nude woman feeding a dog

description: Nude woman feeding a dog. This is plate 514, captioned "Feeding a dog" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-21547
title: Nude man sitting down, sprinkling water, stooping for cup and drinking

description: Nude man sitting down. This is plate 490, captioned "A, B: Sitting down. C: Sprinkling water. D: Stooping for cup and drinking" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.5281/zenodo.13130987
title: Linked collectors and determiners for: Notes on the typification of fourteen names published by A. R. Franchet in Saussurea DC. (Asteraceae).

description: Natural history specimen data linked to collectors and determiners held within, "Notes on the typification of fourteen names published by A. R. Franchet in Saussurea DC. (Asteraceae)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/fe1867c1-2ded-4d97-a5ad-3cdd30cb1d8d using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/fe1867c1-2ded-4d97-a5ad-3cdd30cb1d8d. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18695042
title: Linked collectors and determiners for: Notes on the typification of fourteen names published by A. R. Franchet in Saussurea DC. (Asteraceae).

description: Natural history specimen data linked to collectors and determiners held within, "Notes on the typification of fourteen names published by A. R. Franchet in Saussurea DC. (Asteraceae)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/fe1867c1-2ded-4d97-a5ad-3cdd30cb1d8d using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/fe1867c1-2ded-4d97-a5ad-3cdd30cb1d8d. Formatted as a Frictionless Data package.
DOI: 10.25549/rbm-c58-21587
title: Nude man hammering at an anvil, using a hatchet, sawing a board

description: Nude man hammering at an anvil. This is plate 491 captioned "A, B: Hammering at an anvil. C: Using a hatchet. D: Sawing a board" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.5281/zenodo.18695043
title: Linked collectors and determiners for: Description of seven new species of Edessa Fabricius, 1803 from Central America (Heteroptera, Pentatomidae, Edessinae).

description: Natural history specimen data linked to collectors and determiners held within, "Description of seven new species of Edessa Fabricius, 1803 from Central America (Heteroptera, Pentatomidae, Edessinae)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/003b170c-8502-42c3-a9f7-d0e8e02febdf using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/003b170c-8502-42c3-a9f7-d0e8e02febdf. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10510186
title: Linked collectors and determiners for: Description of seven new species of Edessa Fabricius, 1803 from Central America (Heteroptera, Pentatomidae, Edessinae).

description: Natural history specimen data linked to collectors and determiners held within, "Description of seven new species of Edessa Fabricius, 1803 from Central America (Heteroptera, Pentatomidae, Edessinae)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/003b170c-8502-42c3-a9f7-d0e8e02febdf using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/003b170c-8502-42c3-a9f7-d0e8e02febdf. Formatted as a Frictionless Data package.
DOI: 10.25549/rbm-c58-21595
title: Nude man hammering at an anvil, using a hatchet, sawing a board

description: Nude man hammering at an anvil. This is plate 491 captioned "A, B: Hammering at an anvil. C: Using a hatchet. D: Sawing a board" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-21616
title: Nude man hammering at an anvil, using a hatchet, sawing a board

description: Nude man hammering at an anvil. This is plate 491 captioned "A, B: Hammering at an anvil. C: Using a hatchet. D: Sawing a board" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-21631
title: Nude man hammering at an anvil, using a hatchet, sawing a board

description: Nude man hammering at an anvil. This is plate 491 captioned "A, B: Hammering at an anvil. C: Using a hatchet. D: Sawing a board" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-15319
title: Nude child stooping and drinking

description: Nude child stooping and drinking. This is plate 477, captioned "Child stooping, lifting a goblet and drinking" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-15324
title: Nude child watering flowers

description: Nude child watering flowers. This is plate 478, captioned "Child sprinkling water over some flowers" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.5281/zenodo.18125427
title: Linked collectors and determiners for: Revision of the genus Pollanisus Walker, 1854 (Lepidoptera: Zygaenidae: Procridinae).

description: Natural history specimen data linked to collectors and determiners held within, "Revision of the genus Pollanisus Walker, 1854 (Lepidoptera: Zygaenidae: Procridinae)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/018aa9c3-6cd4-4fb5-a5c1-6825acc73a26 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/018aa9c3-6cd4-4fb5-a5c1-6825acc73a26. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18695046
title: Linked collectors and determiners for: Revision of the genus Pollanisus Walker, 1854 (Lepidoptera: Zygaenidae: Procridinae).

description: Natural history specimen data linked to collectors and determiners held within, "Revision of the genus Pollanisus Walker, 1854 (Lepidoptera: Zygaenidae: Procridinae)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/018aa9c3-6cd4-4fb5-a5c1-6825acc73a26 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/018aa9c3-6cd4-4fb5-a5c1-6825acc73a26. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18695047
title: Linked collectors and determiners for: University of Wisconsin - Whitewater Herbarium.

description: Natural history specimen data linked to collectors and determiners held within, "University of Wisconsin - Whitewater Herbarium". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/06e4e4f2-88cd-471d-bc22-31f7662dc115 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/06e4e4f2-88cd-471d-bc22-31f7662dc115. Formatted as a Frictionless Data package.
DOI: 10.25549/rbm-c58-15325
title: Nude child watering flowers

description: Nude child watering flowers. This is plate 478, captioned "Child sprinkling water over some flowers" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.5281/zenodo.10510188
title: Linked collectors and determiners for: University of Wisconsin - Whitewater Herbarium.

description: Natural history specimen data linked to collectors and determiners held within, "University of Wisconsin - Whitewater Herbarium". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/06e4e4f2-88cd-471d-bc22-31f7662dc115 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/06e4e4f2-88cd-471d-bc22-31f7662dc115. Formatted as a Frictionless Data package.
DOI: 10.25549/rbm-c58-15328
title: Nude child watering flowers

description: Nude child watering flowers. This is plate 478, captioned "Child sprinkling water over some flowers" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-15332
title: Nude child watering flowers

description: Nude child watering flowers. This is plate 478, captioned "Child sprinkling water over some flowers" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-16152
title: Man in pelvis cloth laying bricks

description: Man in pelvis cloth laying bricks. This is plate 505, captioned "Bricklaying." from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-16153
title: Man in pelvis cloth laying bricks

description: Man in pelvis cloth laying bricks. This is plate 505, captioned "Bricklaying." from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.5281/zenodo.18125432
title: Linked collectors and determiners for: Coleção de Mastozoologia do Museu de História Natural Capão da Imbuia.

description: Natural history specimen data linked to collectors and determiners held within, "Coleção de Mastozoologia do Museu de História Natural Capão da Imbuia". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/0dfeb21c-5cfa-4bc8-8efd-bfd3f8968d45 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/0dfeb21c-5cfa-4bc8-8efd-bfd3f8968d45. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18695050
title: Linked collectors and determiners for: Coleção de Mastozoologia do Museu de História Natural Capão da Imbuia.

description: Natural history specimen data linked to collectors and determiners held within, "Coleção de Mastozoologia do Museu de História Natural Capão da Imbuia". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/0dfeb21c-5cfa-4bc8-8efd-bfd3f8968d45 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/0dfeb21c-5cfa-4bc8-8efd-bfd3f8968d45. Formatted as a Frictionless Data package.
DOI: 10.15468/dl.byzhpx
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.29_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhodiola quadrifida"
 ]
}

 The dataset includes 86 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029105-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18695051
title: Linked collectors and determiners for: University of Miami, Voss Marine Invertebrate Collections.

description: Natural history specimen data linked to collectors and determiners held within, "University of Miami, Voss Marine Invertebrate Collections". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/0f6d26c0-c645-4f15-b1c9-fbcb77515545 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/0f6d26c0-c645-4f15-b1c9-fbcb77515545. Formatted as a Frictionless Data package.
DOI: 10.25549/rbm-c58-16161
title: Man in pelvis cloth laying bricks

description: Man in pelvis cloth laying bricks. This is plate 505, captioned "Bricklaying." from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.5281/zenodo.10510190
title: Linked collectors and determiners for: University of Miami, Voss Marine Invertebrate Collections.

description: Natural history specimen data linked to collectors and determiners held within, "University of Miami, Voss Marine Invertebrate Collections". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/0f6d26c0-c645-4f15-b1c9-fbcb77515545 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/0f6d26c0-c645-4f15-b1c9-fbcb77515545. Formatted as a Frictionless Data package.
DOI: 10.25549/rbm-c58-16164
title: Man in pelvis cloth laying bricks

description: Man in pelvis cloth laying bricks. This is plate 505, captioned "Bricklaying." from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-16184
title: Man in pelvis cloth carpentering

description: Man in pelvis cloth carpentering. This is plate 507, captioned "Carpentering." from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-15340
title: Nude child watering flowers

description: Nude child watering flowers. This is plate 478, captioned "Child sprinkling water over some flowers" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-15349
title: Nude child watering flowers

description: Nude child watering flowers. This is plate 478, captioned "Child sprinkling water over some flowers" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.