cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24790842.v1
title: Verifying Opacity of Discrete-Timed Automata Artifact

description: Opacity is a powerful confidentiality property that holds if a system cannot leak secret information through observable behavior. In recent years, time has become an increasingly popular attack vector. The notion of opacity has therefore been extended to timed automata (TA). However, the verification of opacity of TA has been proven to be undecidable for the commonly used dense time model. To make the problem decidable, state of the art approaches consider weaker notions of opacity or heavily restrict the class of considered TA, resulting in unrealistic threat models.<br>We address the problem of verifying opacity of TA without restrictions. For this purpose, we consider a discrete time setting. We present a novel algorithm to transform TA to equivalent finite automata (FA) and then use known methods to verify opacity of the resulting FA. To improve the efficiency of our algorithm, we use a novel time abstraction that significantly reduces the state space of the resulting FA, improving the scalability of our approach. We validate our method using randomized systems, as well as four case studies from the literature showing that our approach is applicable in practice.<br><br>We provide a VM with all software pre-installed to run our evaluation.
DOI: 10.25318/3310074001-fra
title: L’organisme reçoit des revenus sous forme de dons du public et doit relever des défis lorsqu’il cherche à obtenir des dons du public, quatrième trimestre de 2023

description: L’organisme reçoit des revenus sous forme de dons du public et doit relever des défis lorsqu’il cherche à obtenir des dons du public, selon le Système de classification des industries de l’Amérique du Nord (SCIAN), l’effectif de l’entreprise, le type d’entreprise, l’activité de l'entreprise et le propriétaire majoritaire, quatrième trimestre de 2023.
DOI: 10.5281/zenodo.10069882
title: Molecular dynamics trajectories related to manuscript: SARS-CoV-2 nsp3 and nsp4 are minimal constituents of a pore spanning replication organelle

description: This dataset contains two folders, each with sequentially numbers coordinates files for all-atom molecular dynamics trajectories related to the manuscript "SARS-CoV-2 nsp3 and nsp4 are minimal constituents of a pore spanning replication organelle" by Zimmermann et al. Each folder contains PDB and PSF files specifying the components of each system depicted in Fig. S10 of that manuscript as well as 200 sequentially named DCD files, each containing 5 nanoseconds of a 1 microsecond trajectory.
DOI: 10.5281/zenodo.10069883
title: Molecular dynamics trajectories related to manuscript: SARS-CoV-2 nsp3 and nsp4 are minimal constituents of a pore spanning replication organelle

description: This dataset contains two folders, each with sequentially numbers coordinates files for all-atom molecular dynamics trajectories related to the manuscript "SARS-CoV-2 nsp3 and nsp4 are minimal constituents of a pore spanning replication organelle" by Zimmermann et al. Each folder contains PDB and PSF files specifying the components of each system depicted in Fig. S10 of that manuscript as well as 200 sequentially named DCD files, each containing 5 nanoseconds of a 1 microsecond trajectory.
DOI: 10.25747/58p6-6b76
title: Pre-processed atmospheric data from the SAIL campaign onboard the Sagres ship
DOI: 10.6084/m9.figshare.23936268
title: Increment Calculations (Excel)

description: This file provides the input data, assumptions and calculations used to compute the statistics on gross and net annual forest increment and natural losses for Europe, harmonized for definitions and reference period.The description of the content of this file is provided in the "ReadMe" spreadsheet within the file
DOI: 10.6084/m9.figshare.23936268.v3
title: Increment Calculations (Excel)

description: This file provides the input data, assumptions and calculations used to compute the statistics on gross and net annual forest increment and natural losses for Europe, harmonized for definitions and reference period.The description of the content of this file is provided in the "ReadMe" spreadsheet within the file
DOI: 10.6084/m9.figshare.24817254
title: The Impact of Interdisciplinary, Gender and Geographic Distributions on the Citation Patterns of the Journal of Chemical Information and Modeling

description: The Impact of Interdisciplinary, Gender and Geographic Distributions on the Citation Patterns of the Journal of Chemical Information and ModelingFigures 1 (a,b,c,d) and 2 (a,b,c,d) and 3 (d) can be generated using the graphs.R scriptFigures 3 (a,b,c) running the notebooks Figures3a.ipynb, Figures3b.ipynb and Figures3c.ipynb, respectively.<br>
DOI: 10.6084/m9.figshare.24817254.v1
title: The Impact of Interdisciplinary, Gender and Geographic Distributions on the Citation Patterns of the Journal of Chemical Information and Modeling

description: The Impact of Interdisciplinary, Gender and Geographic Distributions on the Citation Patterns of the Journal of Chemical Information and ModelingFigures 1 (a,b,c,d) and 2 (a,b,c,d) and 3 (d) can be generated using the graphs.R scriptFigures 3 (a,b,c) running the notebooks Figures3a.ipynb, Figures3b.ipynb and Figures3c.ipynb, respectively.<br>
DOI: 10.25318/3310074101-eng
title: Impacts or expected impacts of challenges related to donations, fourth quarter of 2023

description: Impacts or expected impacts of challenges related to donations, by North American Industry Classification System (NAICS), business employment size, type of business, business activity and majority ownership, fourth quarter of 2023.
DOI: 10.6084/m9.figshare.23936262
title: Biomass Calculations (Excel)

description: This file provides the input data, assumptions and calculations used to compute the statistics on forest area, biomass, FAWS and BAWS for Europe, harmonized for definitions and reference year.The description of the content of this file is provided in the "ReadMe" spreadsheet within the file
DOI: 10.6084/m9.figshare.23936262.v2
title: Biomass Calculations (Excel)

description: This file provides the input data, assumptions and calculations used to compute the statistics on forest area, biomass, FAWS and BAWS for Europe, harmonized for definitions and reference year.The description of the content of this file is provided in the "ReadMe" spreadsheet within the file
DOI: 10.25318/3310074101-fra
title: Incidences ou incidences prévues liées aux dons, quatrième trimestre de 2023

description: Incidences ou incidences prévues liées aux dons, selon le Système de classification des industries de l’Amérique du Nord (SCIAN), l’effectif de l’entreprise, le type d’entreprise, l’activité de l'entreprise et le propriétaire majoritaire, quatrième trimestre de 2023.
DOI: 10.6084/m9.figshare.24104067.v1
title: <b>The strengthened impact of water availability at interannual and decadal timescales on vegetation GPP</b>

description: This data used to analysis the impact of muti-timescales of scPDSI on vegetation GPP
DOI: 10.21227/ckg2-9s11
title: A dataset of cognitive collapse

description: This dataset is developed to support research on early warning of pilots' cognitive collapse. It encompasses the recordings of 10 participants over 3 separate sessions in the simulated flight experiment paradigm. The experiment aims to elicit the pilots' cognitive collapse state and to early warn of the tipping points, for details you can refer to the paper "An Early Warning Approach for Pilots’ Cognitive Tipping Points Based Multi-modal Signals". Each trial consists of 3 stages that can induce cognitive states at low, medium, and high level with a cognitive collapse. The dataset includes EEG, eye movement, task performance data, and experimenter's recording. It has a total of 30 trials and is approximately 4.7G in size.
DOI: 10.6084/m9.figshare.24830493
title: Supplementary Material for: Developmental defects of enamel: a bibliometric analysis of the top 100 most-cited papers

description: Background: Developmental Defects of Enamel (DDE) are a result of disturbances during formation and maturation of the enamel. Evaluating the most-cited DDE papers can provide important tools that point to the gaps and strengths of this important topic.
Summary: This bibliometric study analyzed the 100 most-cited papers on DDE. Using a combined keyword search strategy, the 100 most-cited papers in the Web of Science Core Collection (WoS-CC) were selected. Papers that addressed any type of DDE were included. The extracted data were title, number of citations, study theme, authorship, journal, type of DDE, type of dentition (primary or permanent), type of diagnosis, study design, year and country of publication. The bibliometric networks were generated through VOSviewer software. The 100 papers had a range from 78 to 459 citations. The main themes of studies were etiopathogenesis (53%), prevalence and incidence (22%) and diagnosis (8%). The author with the highest number of citations were Goodman AH and Rose JC (459 citations). Most articles were published in dental journals (47%). The most studied types of DDE were fluorosis and amelogenesis imperfecta in the permanent dentition (47%). Observational (24%) and non-systematic reviews (24%) were the most common study designs and ranged from 1977 to 2019. The country with the highest number of citations was the USA (40%). 
Key messages: Most of the top 100 DDE papers were about fluorosis and amelogenesis imperfecta, with top papers from three continents with English as the native language. This topic is of great importance in dentistry, and the need for further studies is highlighted, especially regarding the diagnosis and treatment of some DDEs.
DOI: 10.6084/m9.figshare.24830493.v1
title: Supplementary Material for: Developmental defects of enamel: a bibliometric analysis of the top 100 most-cited papers

description: Background: Developmental Defects of Enamel (DDE) are a result of disturbances during formation and maturation of the enamel. Evaluating the most-cited DDE papers can provide important tools that point to the gaps and strengths of this important topic.
Summary: This bibliometric study analyzed the 100 most-cited papers on DDE. Using a combined keyword search strategy, the 100 most-cited papers in the Web of Science Core Collection (WoS-CC) were selected. Papers that addressed any type of DDE were included. The extracted data were title, number of citations, study theme, authorship, journal, type of DDE, type of dentition (primary or permanent), type of diagnosis, study design, year and country of publication. The bibliometric networks were generated through VOSviewer software. The 100 papers had a range from 78 to 459 citations. The main themes of studies were etiopathogenesis (53%), prevalence and incidence (22%) and diagnosis (8%). The author with the highest number of citations were Goodman AH and Rose JC (459 citations). Most articles were published in dental journals (47%). The most studied types of DDE were fluorosis and amelogenesis imperfecta in the permanent dentition (47%). Observational (24%) and non-systematic reviews (24%) were the most common study designs and ranged from 1977 to 2019. The country with the highest number of citations was the USA (40%). 
Key messages: Most of the top 100 DDE papers were about fluorosis and amelogenesis imperfecta, with top papers from three continents with English as the native language. This topic is of great importance in dentistry, and the need for further studies is highlighted, especially regarding the diagnosis and treatment of some DDEs.
DOI: 10.21942/uva.24830442.v1
title: Molecular Dynamics

description: Here, all data and analysis of the molecular simulations of collagen in water and heavy water.
DOI: 10.21942/uva.24830442
title: Molecular Dynamics

description: Here, all data and analysis of the molecular simulations of collagen in water and heavy water.
DOI: 10.6084/m9.figshare.23937912
title: FAWS Map Thresholds (Excel)

description: List of the thresholds used for each parameter and country to map the forest areas not available for wood supply.
DOI: 10.6084/m9.figshare.23937912.v2
title: FAWS Map Thresholds (Excel)

description: List of the thresholds used for each parameter and country to map the forest areas not available for wood supply.
DOI: 10.5281/zenodo.10049204
title: A methodological approach to identify priority zones for monitoring and assessment of wild bee species under climate change.
DOI: 10.5281/zenodo.10049205
title: A methodological approach to identify priority zones for monitoring and assessment of wild bee species under climate change.
DOI: 10.5281/zenodo.10390853
title: Dataset of "Experimental Implementation of Molecule Shift Keying for Enhanced Molecular Communication"

description: Molecular communication is a paradigm inspired by biological systems, where chemical signals encode and transmit information. MoSK (Molecule Shift Keying) is proposed as a modulation technique that utilizes different signaling molecules to encode digital information. MoSK mimics natural molecular communication by leveraging the diversity of signaling molecules and their specific roles. Experimental testbeds have been developed using microfluidic systems, droplet-based platforms, and biological cells to validate MoSK. A prototype platform for MoSK was implemented, including a transmitter with infusion and selection valves, and a fluorescence-based receiver. The receiver detects and decodes fluorescence signals emitted by Graphene Quantum Dots (GQDs), which are water-soluble and fluorescent molecular messengers. The receiver acquires the fluorescence signals of blue-GQDs and cyan-GQDs, and the performance of the system can be evaluated in terms of synchronization, detection threshold, and symbol recognition using the provided dataset.

Each file contains the signal related to 5 molecular messenger releases consisting of blue-GQDs or cyan-GQDs. The sequence of successive releases is given in the file MoSK-sequence.txt.

The first row of the file contains the value of the emission wavelength, expressed in nanometers.

The first column of the file contains the receive time value, expressed in seconds.

The other values represent the emission intensities, expressed in arbitrary units.

 

Please write to nunzio.tuccitto@unict.it for more information.
DOI: 10.5281/zenodo.10390855
title: Dataset of "Experimental Implementation of Molecule Shift Keying for Enhanced Molecular Communication"

description: Molecular communication is a paradigm inspired by biological systems, where chemical signals encode and transmit information. MoSK (Molecule Shift Keying) is proposed as a modulation technique that utilizes different signaling molecules to encode digital information. MoSK mimics natural molecular communication by leveraging the diversity of signaling molecules and their specific roles. Experimental testbeds have been developed using microfluidic systems, droplet-based platforms, and biological cells to validate MoSK. A prototype platform for MoSK was implemented, including a transmitter with infusion and selection valves, and a fluorescence-based receiver. The receiver detects and decodes fluorescence signals emitted by Graphene Quantum Dots (GQDs), which are water-soluble and fluorescent molecular messengers. The receiver acquires the fluorescence signals of blue-GQDs and cyan-GQDs, and the performance of the system can be evaluated in terms of synchronization, detection threshold, and symbol recognition using the provided dataset.

Each file contains the signal related to 5 molecular messenger releases consisting of blue-GQDs or cyan-GQDs. The sequence of successive releases is given in the file MoSK-sequence.txt.

The first row of the file contains the value of the emission wavelength, expressed in nanometers.

The first column of the file contains the receive time value, expressed in seconds.

The other values represent the emission intensities, expressed in arbitrary units.

 

Please write to nunzio.tuccitto@unict.it for more information.
DOI: 10.5281/zenodo.10032071
title: A methodological approach to identify priority zones for monitoring and assessment of wild species under climate change
DOI: 10.5281/zenodo.10032072
title: A methodological approach to identify priority zones for monitoring and assessment of wild species under climate change
DOI: 10.6084/m9.figshare.24495943
title: Supplementary Material for: Exploring the expression of Adenosine Pathway-Related Markers CD73 and CD39 in Colorectal and Pancreatic Carcinomas Characterized by Multiplex Immunofluorescence: A Pilot Study

description: Introduction: Generating high levels of immunosuppressive adenosine in the tumor microenvironment contributes to cancer immune evasion. CD39 and CD73 hydrolyze adenosine triphosphate into adenosine; thus, efforts have been made to target this pathway for cancer immunotherapy. Our objective was optimizing a multiplex immunofluorescence (mIF) panel to explore the role of CD39 and CD73 within the tumor microenvironment. 
Materials and methods: In three-time points, a small cohort (n=8 ) of colorectal and pancreatic adenocarcinomas were automated staining using an mIF panel against CK, CD3, CD8, CD20, CD39, CD73 and CD68 to compare them with individual markers immunohistochemistry (IHC) for internal panel validation. Densities of immune cells and distances from different tumor-associated immune cells to tumor cells were exploratory assessment and compared with clinicopathologic variables and outcomes.
Results: Comparing the three-time points and individual IHC staining results, we demonstrated high reproducibility of the mIF panel. CD39 and CD73 expression was low in malignant cells; the exploratory analysis showed higher densities of CD39 expression by various cells, predominantly stromal cells, followed by T cells, macrophages, and B cells. No expression of CD73 by B cells or macrophages was detected. Distance analysis revealed proximity of cytotoxic T cells, macrophages, and T cells expressing CD39 to malignant cells, suggesting a close regulatory signal driven by this adenosine marker. 
Conclusions: We optimized an mIF panel for detection of markers in the adenosine pathway, an emerging clinically relevant pathway. The densities and spatial distribution demonstrated that this pathway may modulate aspects of the tumor immune microenvironment.
DOI: 10.6084/m9.figshare.24495943.v1
title: Supplementary Material for: Exploring the expression of Adenosine Pathway-Related Markers CD73 and CD39 in Colorectal and Pancreatic Carcinomas Characterized by Multiplex Immunofluorescence: A Pilot Study

description: Introduction: Generating high levels of immunosuppressive adenosine in the tumor microenvironment contributes to cancer immune evasion. CD39 and CD73 hydrolyze adenosine triphosphate into adenosine; thus, efforts have been made to target this pathway for cancer immunotherapy. Our objective was optimizing a multiplex immunofluorescence (mIF) panel to explore the role of CD39 and CD73 within the tumor microenvironment. 
Materials and methods: In three-time points, a small cohort (n=8 ) of colorectal and pancreatic adenocarcinomas were automated staining using an mIF panel against CK, CD3, CD8, CD20, CD39, CD73 and CD68 to compare them with individual markers immunohistochemistry (IHC) for internal panel validation. Densities of immune cells and distances from different tumor-associated immune cells to tumor cells were exploratory assessment and compared with clinicopathologic variables and outcomes.
Results: Comparing the three-time points and individual IHC staining results, we demonstrated high reproducibility of the mIF panel. CD39 and CD73 expression was low in malignant cells; the exploratory analysis showed higher densities of CD39 expression by various cells, predominantly stromal cells, followed by T cells, macrophages, and B cells. No expression of CD73 by B cells or macrophages was detected. Distance analysis revealed proximity of cytotoxic T cells, macrophages, and T cells expressing CD39 to malignant cells, suggesting a close regulatory signal driven by this adenosine marker. 
Conclusions: We optimized an mIF panel for detection of markers in the adenosine pathway, an emerging clinically relevant pathway. The densities and spatial distribution demonstrated that this pathway may modulate aspects of the tumor immune microenvironment.
DOI: 10.26093/cds/aladin/978q-cm
title: HLA-UV : F170W HiPS

description: The HST-HLA Hierarchical Progressive Survey (HiPS) has been built by Daniel Durand from CADC and distributed by CDS. It sets together all HST observations done in F170W filter between the beginning of the mission to the 4th of October 2014.The Hubble Space Telescope (HST) is a cooperative program of the European Space Agency (ESA) and the National Aeronautics and Space Administration (NASA) to operate a space-based observatory for the benefit of the international astronomical community. The Hubble Legacy Archive (HLA) is designed to optimize science from the Hubble Space Telescope by providing online, enhanced Hubble products and advanced browsing capabilities. The HLA is a joint project of the Space Telescope Science Institute (STScI), the Space Telescope European Coordinating Facility (ST-ECF), and the Canadian Astronomy Data Centre (CADC). Currently we have enhanced image products for ACS, WFPC2, WFC3, and NICMOS, extracted spectra from NICMOS and ACS grism observations. The enhanced data products were generated from the standard HST pipeline products. The ACS, WFPC2, and WFC3, and NICMOS images have been combined using MultiDrizzle, are aligned north up , and, except for WFC3, have been astrometrically corrected when possible (for approximately 80% of the cases). All HLA-produced images are in units of electrons/second, which for WFPC2 and NICMOS differs from calibration pipeline products; photometric zeropoints must be adjusted to reflect the units used.
DOI: 10.6084/m9.figshare.24792744
title: Supplementary Material for: The matter of kidney biopsy in Monoclonal Gammopathy of Renal Significance: a case report of a new pattern of Immunoglobulin-Storing Histiocytosis

description: The acronym MGRS represents a group of disorders, characterized by paraproteinemia which causes renal damage. These disorders never meet the diagnostic criteria for multiple myeloma (MM) or lymphoproliferative disease. Crystal-storing histiocytosis (CSH) is one of the rarest patterns of MGRS, characterized by an accumulation of light chains crystals within histiocyte’s cytoplasm, located in bone marrow or other extramedullary sites such as kidney, cornea, or thyme. A very few cases have been described as Immunoglobulin-storing histiocytosis (IgSH) without evidence of crystals. In the recent literature, only 3 cases of IgSH have been described so far, none renal. In all cases, these very peculiar histopathological patterns are associated with lymphoproliferative or plasma cellular disorders. Here, we report a very unusual IgSH pattern in a kidney biopsy, which led to prompt detection and early therapeutic intervention, in a patient with otherwise misdiagnosed MGRS.
DOI: 10.5281/zenodo.8290523
title: What can radar-based measures of subglacial hydrology tell us about basal shear stress? A case study at Thwaites Glacier, West Antarctica (Interpolated Data)

description: This dataset accompanies the paper 'What can radar-based measures of subglacial hydrology tell us about basal shear stress? A case study at Thwaites Glacier, West Antarctica' in Journal of Glaciology, and can be used alongside the code found on Github (https://github.com/rohaizharis/inversion_radar2022) to reproduce the figures. The dataset consists of radar data (specularity and relative reflectivity) and basal shear stress inversions that have been interpolated onto radar flight tracks.