cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.xyyh5g
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Hemitragus hylocrius)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019988-250802193616735/datasets/export for details.
DOI: 10.15468/dl.sk2ezn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Hemitragus hylocrius)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019987-250802193616735/datasets/export for details.
DOI: 10.14466/cefasdatahub.133
title: Marine biotoxin data measured within crab and lobster flesh taken from samples gathered from the Northumberland coast in 2021 and 2022

description: Measurements of marine biotoxin concentrations quantified in crab and lobster tissues sampled from North East England around the time of the crustacean mortality event(s) during 2021.  Samples were collected from October 2021 to May 2022 to determine if toxins were present in tissues which may have impacted animal health.
The following instruments and methods we used to determine the concentrations of chemicals within the samples. Amnesic Shellfish Poisoning (ASP) analysis by liquid chromatography (LC) with ultraviolet detection (LC-UV). Lipophilic toxins (LT) analysis by LC with tandem mass spectrometry (LC-MS/MS). Paralytic Shellfish Toxins (PST) analysis by LC-MS/MS. The LC-MS/MS method for PST was formally validated and published for crab matrix and bivalve shellfish. The LT and ASP methods were only validated for bivalve shellfish. Caveats therefore relate to the use of an unknown method performance for ASP and LT toxins, due to lack of formal method validation.
DOI: 10.15468/dl.tvd54q
title: Occurrence Download

description: A dataset containing 1997 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Philentoma velata)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 1997 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019985-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.syu9cx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Hemitragus hylocrius)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019989-250802193616735/datasets/export for details.
DOI: 10.15468/dl.udw2j3
title: Occurrence Download

description: A dataset containing 2520812 records in GBIF matching the query:
SELECT "year", GBIF_EEARGCode( 1000, decimalLatitude, decimalLongitude, COALESCE(coordinateUncertaintyInMeters, 1000) ) AS eeaCellCode, classKey, class, COUNT(*) AS occurrences, MIN(COALESCE(coordinateUncertaintyInMeters, 1000)) AS minCoordinateUncertaintyInMeters, MIN(GBIF_TemporalUncertainty(eventDate, null)) AS minTemporalUncertainty FROM occurrence WHERE occurrenceStatus = 'PRESENT' AND countrycode = 'BE' AND "year" &gt;= 1900 AND hasCoordinate = TRUE AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID') AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') AND (LOWER(identificationVerificationStatus) NOT IN ( 'unverified', 'unvalidated', 'not validated', 'under validation', 'not able to validate', 'control could not be conclusive due to insufficient knowledge', 'uncertain', 'unconfirmed', 'unconfirmed - not reviewed', 'validation requested' ) OR identificationVerificationStatus IS NULL)AND classKey IN (126, 131, 137, 139, 148, 151, 179, 183, 186, 194, 196, 199, 203, 205, 206, 212, 216, 220, 225, 229, 232, 244, 245, 252, 255, 256, 270, 281, 282, 307, 327, 328, 354, 356, 359, 360, 361, 365, 367, 7073593, 7228684, 7742773, 7774442, 7947184, 8179345, 9273948, 10689325, 11133537, 11418114, 11493978, 11545536, 11592253)AND COALESCE(coordinateUncertaintyInMeters, 1000) &lt;= 10000GROUP BY "year", eeaCellCode, classKey, class ORDER BY "year" DESC, eeaCellCode ASC, classKey ASC;

 The dataset's 2520812 records were derived from 694 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019962-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ekrky7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is Human Observation",
 "Year is greater than or equal to 2009",
 "Year is less than or equal to 2025",
 "Country is one of (United States of America)",
 "StateProvince is California",
 "TaxonKey is Mustela frenata"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019990-250802193616735/datasets/export for details.
DOI: 10.6084/m9.figshare.29839514
title: <b>Identification of porcine-derived atypical intestinal pathogenic </b><b><i>Escherichia coli</i></b><b> alerts to a hidden threat of extraintestinal infection</b>

description: Post-weaning diarrhea in piglets is primarily caused by enterotoxigenic <i>Escherichia coli</i> (ETEC) and Shiga toxin-producing <i>E. coli </i>(STEC). However, the diversity and combinatorial patterns of virulence factors among clinical isolates remain poorly characterized. In recent years, hybrid pathogenic <i>E. coli</i> strains that possess both intestinal and extraintestinal virulence traits have gained increasing attention, posing emerging threats to swine health and food safety. Here, we systematically screened 296 <i>E. coli</i> isolates from diarrheic piglets and identified a subset of strains lacking classical ETEC/STEC virulence factors but co-harboring F18 fimbriae and hemolysin gene clusters. These strains exhibited strong intestinal adhesion and colonization abilities and may represent a novel pathotype, which we designated as enteroadherent hemolytic <i>E. coli </i>(EAHEC). Notably, EAHEC strains belonging to phylogroup D also displayed significant extraintestinal pathogenicity, suggesting their potential for cross-niche infections. Based on this finding, we further identified 17 hybrid strains and classified them into genotype-based and phenotype-based hybrid strain groups according to their virulence factor profiles, indicating the presence of hybrid strains even among atypical intestinal pathotypes. <i>In vitro</i> and <i>in vivo</i> assays showed that most hybrid strains possessed strong intestinal colonization capacity, whereas systemic infection potential varied significantly, with B2 and D phylogroup strains exhibiting the highest virulence. In conclusion, our study reveals the diverse combinations of virulence modules in porcine intestinal <i>E. coli</i> isolates and highlights the emergence and pathogenic potential of hybrid strains, providing novel insights into the mechanisms of atypical intestinal pathotypes and informing future strategies for swine disease surveillance and control.
DOI: 10.6084/m9.figshare.29839514.v1
title: <b>Identification of porcine-derived atypical intestinal pathogenic </b><b><i>Escherichia coli</i></b><b> alerts to a hidden threat of extraintestinal infection</b>

description: Post-weaning diarrhea in piglets is primarily caused by enterotoxigenic <i>Escherichia coli</i> (ETEC) and Shiga toxin-producing <i>E. coli </i>(STEC). However, the diversity and combinatorial patterns of virulence factors among clinical isolates remain poorly characterized. In recent years, hybrid pathogenic <i>E. coli</i> strains that possess both intestinal and extraintestinal virulence traits have gained increasing attention, posing emerging threats to swine health and food safety. Here, we systematically screened 296 <i>E. coli</i> isolates from diarrheic piglets and identified a subset of strains lacking classical ETEC/STEC virulence factors but co-harboring F18 fimbriae and hemolysin gene clusters. These strains exhibited strong intestinal adhesion and colonization abilities and may represent a novel pathotype, which we designated as enteroadherent hemolytic <i>E. coli </i>(EAHEC). Notably, EAHEC strains belonging to phylogroup D also displayed significant extraintestinal pathogenicity, suggesting their potential for cross-niche infections. Based on this finding, we further identified 17 hybrid strains and classified them into genotype-based and phenotype-based hybrid strain groups according to their virulence factor profiles, indicating the presence of hybrid strains even among atypical intestinal pathotypes. <i>In vitro</i> and <i>in vivo</i> assays showed that most hybrid strains possessed strong intestinal colonization capacity, whereas systemic infection potential varied significantly, with B2 and D phylogroup strains exhibiting the highest virulence. In conclusion, our study reveals the diverse combinations of virulence modules in porcine intestinal <i>E. coli</i> isolates and highlights the emergence and pathogenic potential of hybrid strains, providing novel insights into the mechanisms of atypical intestinal pathotypes and informing future strategies for swine disease surveillance and control.
DOI: 10.15468/dl.zgumdp
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aphyosemion wuendschi)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019992-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.huyb8g
title: Occurrence Download

description: A dataset containing 74 records in GBIF matching the query:
SELECT "year", GBIF_EEARGCode( 1000, decimalLatitude, decimalLongitude, COALESCE(coordinateUncertaintyInMeters, 1000) ) AS eeaCellCode, classKey, class, genusKey, genus, COUNT(*) AS occurrences, MIN(COALESCE(coordinateUncertaintyInMeters, 1000)) AS minCoordinateUncertaintyInMeters, MIN(GBIF_TemporalUncertainty(eventDate, null)) AS minTemporalUncertainty FROM occurrence WHERE occurrenceStatus = 'PRESENT' AND genusKey IN (2284443, 2202786, 2161911, 2161467, 7652364, 2176168, 3092125, 2771094, 8782549, 2457378, 2453882, 2457825, 2454645, 2465626, 2466496, 2459675, 2444141, 2444221, 2447418, 2441658, 2442664, 3266899, 2473221, 2445496, 5221394, 2443339, 4553469) AND countrycode = 'BE' AND "year" &gt;= 1900 AND hasCoordinate = TRUE AND genusKey IS NOT NULL AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID') AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') AND (LOWER(identificationVerificationStatus) NOT IN ( 'unverified', 'unvalidated', 'not validated', 'under validation', 'not able to validate', 'control could not be conclusive due to insufficient knowledge', 'uncertain', 'unconfirmed', 'unconfirmed - not reviewed', 'validation requested' ) OR identificationVerificationStatus IS NULL) AND COALESCE(coordinateUncertaintyInMeters, 1000) &lt;= 10000 GROUP BY "year", eeaCellCode, classKey, class, genusKey, genus ORDER BY "year" DESC, eeaCellCode ASC, genusKey ASC;

 The dataset's 74 records were derived from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019967-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wujzca
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bunolagus monticularis"
 ]
}

 The dataset includes 47 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019994-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uhexww
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Carex meyeriana"
 ]
}

 The dataset includes 71 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019993-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gj6xbn
title: Occurrence Download

description: A dataset containing 86621 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (USA.16_1, USA.24_1, USA.35_1, USA.42_1, USA.28_1, USA.17_1, USA.27_1, USA.51_1)",
 "TaxonKey is one of (Squamata, Crocodylia, Testudines)"
 ]
}

 The dataset includes 86621 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019951-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.nl7ga2eh
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (468 records)
DOI: 10.15468/dl.z474k3
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna siamea",
 "Country is Senegal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019995-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18434/mds2-3745
title: Life Cycle Assessment Models for Construction Materials
DOI: 10.15468/dl.hw4ha3
title: Occurrence Download

description: A dataset containing 2069 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Philepitta castanea)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 2069 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019996-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.htfkeh
title: Occurrence Download

description: A dataset containing 132396 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (USA.6_1, USA.32_1)",
 "TaxonKey is one of (Squamata, Crocodylia, Testudines)"
 ]
}

 The dataset includes 132396 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019952-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dpxgjc
title: Occurrence Download

description: A dataset containing 589 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Philepitta schlegeli)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 589 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019997-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5bt9xg
title: Occurrence Download

description: A dataset containing 930 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Haemulon scudderii"
 ]
}

 The dataset includes 930 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019998-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pz3q2e
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna siamea",
 "Country is Sierra Leone",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019999-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rrfxd9
title: Occurrence Download

description: A dataset containing 3696490 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2016",
 "Year is less than or equal to 2021",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Country is United Kingdom of Great Britain and Northern Ireland",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 3696490 records from 178 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019965-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jjnxyv
title: Occurrence Download

description: A dataset containing 30769 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Brunei Darussalam, Cambodia, Indonesia, Lao People’s Democratic Republic, Malaysia, Myanmar, Philippines, Singapore, Timor-Leste, Thailand, Viet Nam)",
 "TaxonKey is Urticaceae"
 ]
}

 The dataset includes 30769 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008455-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1qp30g
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085353-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bmjv67
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sepedon aenescens Wiedemann, 1830",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 38 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0185095-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8hyev6
title: Occurrence Download

description: A dataset containing 574539538 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "PublishingCountry is United States of America"
 ]
}

 The dataset includes 574539538 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105116-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.