cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3238624
title: Histological validation of per-bundle water diffusion metrics within a region of fiber crossing following axonal degeneration - Synthetic data

description: Analysis of dMRI of the optic chiasm using CSD revealed unexpectedly high AFD of the intact bundle in the experimental animals. To evaluate whether this finding is an artifact produced by CSD, we used analytic synthetic data. Using the multi-tensor model, two sets of synthetic dMRI data were created consisting of 100 voxels, each with two tensors crossing at right angles. For each voxel, one tensor was modelled as an “intact” fiber bundle, following the DTI metrics observed in our experimental data (λ∥=0.64 and λ⟂=0.12 ×10-3 mm²/s), while the other tensor was modelled as an “injured” fiber bundle (λ∥=0.42 and λ⟂=0.22 ×10-3 mm²/s).  Volume fractions were set as f=0.5 for both tensors. The multi-shell scheme to generate the synthetic signals consisted of 20 b=0 s/mm², and 160 DWI volumes, consisting of 80 diffusion gradient orientations, each with two distinct b values, namely b=1000 and 3000 s/mm². Signal-to-noise ratio was set at 20. 

Diffusion-weighted parameters are shown in the corresponding *protocol.txt files, organized as in the MRtrix gradient scheme (https://mrtrix.readthedocs.io/en/latest/concepts/dw_scheme.html), namely one row per volume, each containing the vector [x y z b], where x, y, and z, correspond to the components of the diffusion gradient direction, and b is the b value in s/mm^2.

Refers to:

Rojas-Vite, Gilberto, Coronado-Leija, Ricardo, Narvaez-Delgado, Omar, Ramirez-Manzanares, Alonso, Marroquin, Jose-Luis, Noguez-Imm, Ramses, Aranda, Marcos L, Scherrer, Benoit, Larriva-Sahd, Jorge, Concha, Luis: Histological validation of per-bundle water diffusion metrics within a region of fiber crossing following axonal degeneration , Available at  bioRxiv, doi.org/10.1101/571539, 2019.
DOI: 10.5281/zenodo.3238625
title: Histological validation of per-bundle water diffusion metrics within a region of fiber crossing following axonal degeneration - Synthetic data

description: Analysis of dMRI of the optic chiasm using CSD revealed unexpectedly high AFD of the intact bundle in the experimental animals. To evaluate whether this finding is an artifact produced by CSD, we used analytic synthetic data. Using the multi-tensor model, two sets of synthetic dMRI data were created consisting of 100 voxels, each with two tensors crossing at right angles. For each voxel, one tensor was modelled as an “intact” fiber bundle, following the DTI metrics observed in our experimental data (λ∥=0.64 and λ⟂=0.12 ×10-3 mm²/s), while the other tensor was modelled as an “injured” fiber bundle (λ∥=0.42 and λ⟂=0.22 ×10-3 mm²/s).  Volume fractions were set as f=0.5 for both tensors. The multi-shell scheme to generate the synthetic signals consisted of 20 b=0 s/mm², and 160 DWI volumes, consisting of 80 diffusion gradient orientations, each with two distinct b values, namely b=1000 and 3000 s/mm². Signal-to-noise ratio was set at 20. 

Diffusion-weighted parameters are shown in the corresponding *protocol.txt files, organized as in the MRtrix gradient scheme (https://mrtrix.readthedocs.io/en/latest/concepts/dw_scheme.html), namely one row per volume, each containing the vector [x y z b], where x, y, and z, correspond to the components of the diffusion gradient direction, and b is the b value in s/mm^2.

Refers to:

Rojas-Vite, Gilberto, Coronado-Leija, Ricardo, Narvaez-Delgado, Omar, Ramirez-Manzanares, Alonso, Marroquin, Jose-Luis, Noguez-Imm, Ramses, Aranda, Marcos L, Scherrer, Benoit, Larriva-Sahd, Jorge, Concha, Luis: Histological validation of per-bundle water diffusion metrics within a region of fiber crossing following axonal degeneration , Available at  bioRxiv, doi.org/10.1101/571539, 2019.
DOI: 10.7910/dvn/zkzyoc/meircx
title: ESAcademy_Code_P2.do

description: :unav
DOI: 10.7910/dvn/zkzyoc/6weksg
title: ESAcademy_Code_P3.do

description: :unav
DOI: 10.7910/dvn/zkzyoc/crjyhp
title: ESAcademyData_P3.tab

description: :unav
DOI: 10.7910/dvn/zkzyoc/esu63o
title: ESAcademyData_P1.tab

description: :unav
DOI: 10.7910/dvn/zkzyoc/htcfou
title: ESAcademyData_P2.tab

description: :unav
DOI: 10.7910/dvn/zkzyoc/ofjpvw
title: ESAcademy_Code_P1.do

description: :unav
DOI: 10.17632/xdjfrscp8w.1
title: Trial 1

description: This is a trial run
DOI: 10.17632/ntw9c2mrg9.1
title: MCC KIT manuscript uncropped images 200729 version

description: The original uncropped images for the papar MCC KIT story 200729 updated version
DOI: 10.25919/5cf71a8ea1bec
title: Parkes observations for project P958 semester 2019APRS_29

description: Fast radio bursts (FRBs) continue to raise more questions than they answer. Until a few months ago, only one burst – the only one known to repeat -  had been localized to a bright radio nebula (either a young supernova remnant or pulsar wind nebulae) in a distant dwarf galaxy.   
Over the last year searches with the Australian Square Kilometre Array Pathfinder (ASKAP) have detected 28 bursts, two of which have been localised to host galaxies at redshifts &gt; 0.3. These bursts and their hosts are very unlike the repeater, suggesting there may be a dichotomy in the population.  Over the next six months we expect to detect another 12 FRBs, which will also have sub-arcsecond localisations.   Here we propose to search this population for repeats.  Our comprehensive sample and a dense monitoring campaign of well localised bursts, at a fluence limit more than 60 times lower than that of their detections, will either confirm the presence of additional repeating FRBs or the uniqueness of FRB 121102 amongst the population.
DOI: 10.5519/qd.47absr7a
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (8009 records)
DOI: 10.5519/qd.wtdftibx
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (15576 records)
DOI: 10.5281/zenodo.3238717
title: RedMed: Extending drug lexicons for social media applications

description: Data associated with the RedMed project. Details for the process behind the data creation can be found in the associated paper: <strong>Lavertu, A. & Altman, R. B. </strong>"RedMed: Extending drug lexicons for social media applications"<br> Journal of Biomedical Informatics, (2019) https://doi.org/10.1016/j.jbi.2019.103307 <strong>RedMed embedding model:</strong> Word vectors trained on comments from health related subreddits and optimized for drug synonym retrieval. The Redmed model was train using only social media data from Reddit and achieves comparable performance on the UMNSRS and MayoSRS similarity tasks. Vectors are 64 dimensional. <strong><strong>redmed_model_vectors.tsv.gz - </strong></strong>Tab-separated word vectors (token\tdim1\tdim2\t...dim64) <strong><strong>redmed_model.bin - </strong></strong>Binary word2vec file saved using gensim, can be loaded into python gensim Other Files: supp_file_1_sidebar_subreddits.txt - List of health-related subreddits based on "r/Health" and "r/Drugs" sidebars<br> supp_file_2_enrichment_based_subreddits.txt - List of health-related subreddits based on amount of health-related content<br> supp_file_3_custom_stopword_list.txt - List of stopwords based on counts derived from Reddit comments
description: {"references": ["Lavertu, A. & Altman, R. B. \"RedMed: Extending drug lexicons for social media applications\" Journal of Biomedical Informatics (2019). https://doi.org/10.1016/j.jbi.2019.103307", "1. Lavertu, A. & Altman, R. B. RedMed: Extending drug lexicons for social media applications. bioRxiv (2019). doi:10.1101/663625"]}
DOI: 10.5281/zenodo.3238718
title: RedMed: Extending drug lexicons for social media applications

description: Data associated with the RedMed project. Details for the process behind the data creation can be found in the associated paper: <strong>Lavertu, A. & Altman, R. B. </strong>"RedMed: Extending drug lexicons for social media applications"<br> Journal of Biomedical Informatics, (2019) https://doi.org/10.1016/j.jbi.2019.103307 <strong>RedMed embedding model:</strong> Word vectors trained on comments from health related subreddits and optimized for drug synonym retrieval. The Redmed model was train using only social media data from Reddit and achieves comparable performance on the UMNSRS and MayoSRS similarity tasks. Vectors are 64 dimensional. <strong><strong>redmed_model_vectors.tsv.gz - </strong></strong>Tab-separated word vectors (token\tdim1\tdim2\t...dim64) <strong><strong>redmed_model.bin - </strong></strong>Binary word2vec file saved using gensim, can be loaded into python gensim Other Files: supp_file_1_sidebar_subreddits.txt - List of health-related subreddits based on "r/Health" and "r/Drugs" sidebars<br> supp_file_2_enrichment_based_subreddits.txt - List of health-related subreddits based on amount of health-related content<br> supp_file_3_custom_stopword_list.txt - List of stopwords based on counts derived from Reddit comments
description: {"references": ["Lavertu, A. & Altman, R. B. \"RedMed: Extending drug lexicons for social media applications\" Journal of Biomedical Informatics (2019). https://doi.org/10.1016/j.jbi.2019.103307", "1. Lavertu, A. & Altman, R. B. RedMed: Extending drug lexicons for social media applications. bioRxiv (2019). doi:10.1101/663625"]}
DOI: 10.7910/dvn/7czmlv/0vbfh2
title: StefanHartge.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/6umaw0
title: Kent Sobrink PPT.PPT

description: :unav
DOI: 10.7910/dvn/7czmlv/9lhuq2
title: Alejandro Berenguer 3.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/abryuw
title: Enrique Pedrosa.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/ascnki
title: RuuddeBruijne.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/oxdz1b
title: EgonPoulsen.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/qmjqww
title: Ole Gunneskov.pdf

description: :unav
DOI: 10.7910/dvn/7czmlv/s7n0hm
title: Arne Wessel.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/tm24ww
title: DavidFarrier.ppt

description: :unav
DOI: 10.21227/5qvn-qw37
title: Big Data Machine Learning Benchmark on Spark

description: We introduce a benchmark of distributed algorithms execution over big data. The datasets are composed of metrics about the computational impact (resource usage) of eleven well-known machine learning techniques on a real computational cluster regarding system resource agnostic indicators: CPU consumption, memory usage, operating system processes load, net traffic, and I/O operations.  The metrics were collected every five seconds for each algorithm on five different data volume scales, totaling 275 distinct datasets. The tested scenarios embraced problems of regression, clustering, classification, dimensionality reduction, and collaborative filtering. We performed experiments on 2.15 TB of synthetic data produced with Intel HiBench, in a cluster composed of 128 cores and 848 GB RAM managed by Apache Spark framework. We hope these datasets can be used by the scientific community to obtain insights about running algorithms on big data processing platforms.
DOI: 10.7910/dvn/7czmlv/5g0lih
title: Poul Sorensen.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/7rsoh7
title: Leo Jensen.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/8lxdee
title: Kimon Argyriadis

description: :unav
DOI: 10.7910/dvn/7czmlv/ath4bc
title: A_Wobben.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/izm2jl
title: Thumbs.db

description: :unav
DOI: 10.7910/dvn/7czmlv/o6cida
title: Everaldo Feitosa.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/pwokbc
title: Marc Sala.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/tjvgxo
title: Alberto de Miguel.PPT

description: :unav
DOI: 10.7910/dvn/7czmlv/0xfy1c
title: MartinHoppeKilper.pdf

description: :unav
DOI: 10.7910/dvn/7czmlv/cwi0ll
title: Thumbs.db

description: :unav
DOI: 10.7910/dvn/7czmlv/fofnvp
title: Walter Hoffmann.pdf

description: :unav
DOI: 10.7910/dvn/7czmlv/gbhuin
title: Richard Ford.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/j3rbcv
title: Tsuyoshi Wakasa.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/jzop42
title: Li Jungfeng.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/llu5ez
title: JohnOlavTande.pdf

description: :unav
DOI: 10.7910/dvn/7czmlv/m2j15u
title: Ronald Voelzke.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/vdtx7n
title: jpeeters_ewec2004.pps

description: :unav
DOI: 10.7910/dvn/7czmlv/xa4zf0
title: Thumbs.db

description: :unav
DOI: 10.17632/v47hfh4dz2.1
title: The use of gas-liquid membrane contactors for ozonation of water and wastewater: A critical review - SI

description: The dataset contains mass transfer coefficients and related operating conditions of ozone membrane contacting experiments, where ozone is delivered to pure water.
DOI: 10.7910/dvn/7czmlv/3saf5o
title: PepPrats.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/c4jgja
title: trans_mode.avi

description: :unav
DOI: 10.7910/dvn/7czmlv/fl5blo
title: Juergen Bernauer_text.pdf

description: :unav
DOI: 10.7910/dvn/7czmlv/i6gjqp
title: PerVolund.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/mg3ejs
title: CornelisLindenburg.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/op9nrv
title: JeffSmith.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/t2y9id
title: Karl-Heinz Weck.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/veyocs
title: oop_mode.avi

description: :unav
DOI: 10.7910/dvn/7czmlv/9xhw4j
title: mode4.avi

description: :unav
DOI: 10.7910/dvn/7czmlv/awbam0
title: InigoMartinez de Alegria.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/esot4a
title: rot_mode.avi

description: :unav
DOI: 10.7910/dvn/7czmlv/gchlmj
title: Vincent Schellings.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/gfziou
title: Alejandro Berenguer1.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/id3a0c
title: SorenVestergaard.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/mpumhv
title: JuergenBernauerppt.pdf

description: :unav
DOI: 10.7910/dvn/7czmlv/qpigxl
title: PhillCartwright.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv/ze5spi
title: Alejandro Berenguer 2.ppt

description: :unav
DOI: 10.7910/dvn/7czmlv
title: 2004 European Wind Energy Conference & Exhibition

description: Conference presentations from the 2004 European Wind Energy Conference & Exhibition
DOI: 10.17632/pc53n5zsrx.1
title: Data for photoluminescence spectra of natural Cr3+-doped MgAl2O4 spinel during order-disorder transition

description: Photoluminescence (PL) spectra of natural Cr3+ doped MgAl2O4 spinel from Tanzania were taken during its order-disorder transition (ODT) process. Samples were changed their disordered degree by heating treatment. PL spectra were taken at the liquid nitrogen (LN) temperature (~77 K) using a 532 nm laser excitation. Spectra from different states were compared with each other and R-line and N-line ratio was used to illustrate the disordered degree of spinel during ODT process. The data fully displayed the details of the spectral variation with high quality. It can be used as a reference for other similar researches, such as spinel PL characterization, ordered degree of synthetic spinel single crystal or ceramics materials, thermal history of spinel, and non-destructive identification of natural and heated spinel gemstones.
DOI: 10.18112/openneuro.ds001882.v1.0.0
title: Social Decision-Making Intertemporal Choice Task Dataset
DOI: 10.25345/c53h0m
title: MassIVE MSV000083888 - GNPS - SIO Pier Foam Samples Spring 2019
title: Non-targeted metabolomics analysis of foam DOM from PPL extracts from Scripps Pier (Feb-April-May 2019).
DOI: 10.17632/f9zxnzcdjr.1
title: Collared peccary

description: Data used to analyse the influences of homosexual behaviour and allonursing on social interactions and hierarchy of collared peccaries (Pecari tajacu)
DOI: 10.17632/jhvr8w4nrz.1
title: Data for assessment of soil water extractable and percolation water dissolved organic carbon in watersheds

description: This data article presents water extractable organic carbon (WEOC), percolation water dissolved organic carbon (pDOC), and antecedent precipitation indices (API) and mean antecedent temperature (MAT) data. The article also presents edaphic properties, such as soil texture elements, total organic carbon (TOC), total nitrogen (TN), cation exchange capacity (CEC), iron (Fe), and aluminum (Al). Additionally, the article presents topography attributes, including topographic position index (TPI) and curvature. All these data were used to analyze both WEOC and pDOC dynamics in the Rukarara River Watershed (RRW), Rwanda. WEOC and soil properties data were analyzed from 52 soil composites samples collected from October to December 2016 using 53x50 mm rings. Data of pDOC were analyzed from percolation water samples collected using a zero tension lysimeters on various dates during the period from Jun 2015 to Jun 2017. Antecedent precipitation index (API) and mean temperature (MAT) data for various antecedent days were calculated on basis of rainfall and air temperature data recorded at three stations within the RRW using tipping bucket rain gauges and sensors installed at three sites located at the main land use/land cover classes within the RRW.
DOI: 10.18112/openneuro.ds001882.v1.0.5
title: Social Decision-Making Intertemporal Choice Task Dataset
DOI: 10.17632/3g279t7ybp.1
title: MD-210-4975-4958-4961 24Feb2020 ST_HW_MNEC (Dataset-1.1)

description: MD-210-4975-4958-4961 24Feb2020 ST_HW_MNEC (Dataset-1.1)
DOI: 10.11578/1523818
title: 2019 CSP Lifetime data CESL015 DE-EE0001556

description: Data set for project to model the lifetime of structural alloys in supercritical carbon dioxide at 700°-800°C.  The mass change data is provided for oxidation in 500-h cycles and 10-h cycles in 0.1 and 30 MPa.  After exposure, oxide thickness and depth of internal oxidation were measured at intervals from 1-10 kh.  Four alloys were studied: Sanicro 25 (stainless steel) and Ni-based alloys 625, Haynes 282 and Inconel 740H.
DOI: 10.5281/zenodo.3237218
title: An acoustically isolated European starling song library

description: A dataset of song collected from 14 European starlings individually recorded in acoustically isolated chambers. Each folder contains vocalizations for one bird.

These data were used for the publication, "<em>Parallels in the sequential organization of birdsong and human speech</em>". Nature Communications (2019). If you use this dataset, please cite this publication and this repository.

Work supported by NSF Graduate Research Fellowship 2017216247 to TS and an NIH R56DC016408 to TQG.
description: {"references": ["Sainburg, T. et al., (2019) Parallels in the sequential organization of birdsong and human speech. Nature Communications"]}
DOI: 10.34677/1728-7936-2019-1-19-25
title: ENERGY CONSIDERATIONS FOR A METHOD OF ASSESSING THE VIABILITY OF SEEDS
title: ЭНЕРГЕТИЧЕСКОЕ ОБОСНОВАНИЕ РАЗРАБОТКИ СПОСОБА ОЦЕНКИ  ЖИЗНЕСПОСОБНОСТИ СЕМЯН

description: Methods for determining the viability of biological objects are based on the identification of differences in the response of objects to the effects of external environmental parameters. To analyze the existing methods for determining the viability of seeds and providing prerequisites for the development of a rapid method for estimating this indicator, use was made of the fundamentals of the analysis of material-energy transformations of material systems in the course of biotechnological processes occurring in them. The most general approach to the analysis of biotechnological processes occurring during storage and subsequent cyclic activation is the regularities of multivariate energy transformations, i.e. this is actually a thermodynamic approach. On this basis, the grain biosystem was compared with the following systems: an isolated system; an energy
conservative system; a dynamically stationary system; and a dynamically quasi-stationary system. The authors have formalized energy conditions, in which biosystems jump into other qualitative states under the influence of external factors. The viability of the examined grain is determined according to the form of the transient process.
description: Методы определения жизнеспособности биологических объектов основаны на выявлении различий в их реакции на воздействие внешних параметров среды. Для анализа существующих методов определения жизнеспособности семян и создания предпосылок для разработки экспрессного метода оценки этого показателя использованы основы анализа процессов вещественно-энергетических преобразований материальных систем при протекании в них биотехнологических процессов. Общим подходом анализа биотехнологических процессов, протекающих при хранении и последующей их циклической
активизации, являются закономерности многовариационных превращений энергии, т.е. по существу это термодинамический подход. Согласно этому положению, биосистема зерновки сравнивалась с четырьмя системами: изолированной, энергетически консервативной, динамически стационарной и динамически квазистационарной. Формализованы энергетические условия, при которых биосистемы под влиянием внешних воздействий скачкообразно переходят в другое качественное состояние. По форме переходного процесса судят о жизнеспособности исследуемых зерновок. Теоретически обосновано, что оценку
жизнеспособности семян экспрессным методом можно производить только в результате катастрофического перехода из одного физиологического состояния семени в другое в результате экстремальных воздействий с контролем внутренней энергии, преобразующейся при ответной физиологической реакции. Предложено получать информацию о преобразовании внутренней энергии семенами пшеницы с помощью измерений биоэлектрических параметров.
DOI: 10.5281/zenodo.3237217
title: An acoustically isolated European starling song library

description: A dataset of song collected from 14 European starlings individually recorded in acoustically isolated chambers. Each folder contains vocalizations for one bird.

These data were used for the publication, "<em>Parallels in the sequential organization of birdsong and human speech</em>". Nature Communications (2019). If you use this dataset, please cite this publication and this repository.

Work supported by NSF Graduate Research Fellowship 2017216247 to TS and an NIH R56DC016408 to TQG.
description: {"references": ["Sainburg, T. et al., (2019) Parallels in the sequential organization of birdsong and human speech. Nature Communications"]}
DOI: 10.17632/7wxvvp4mp3.1
title: relationship between the displacement and the friction angle

description: The first file is the figures about the data; the second file is the displacement change along the depth at different stage of the wall movement; the third file is the level stress and vertical stress along the depth at different stage of the wall movement.
DOI: 10.17632/b3kckcjpfy.1
title: Data for: Low-copy nuclear sequence data confirm complex patterns of farina evolution in notholaenid ferns (Pteridaceae)

description: - Alignment files for 7 molecular markers. [7 files] - Maximum parsimony (MP) trees for 4 nuclear markers. [4 files] - Best maximum likelihood (ML) trees for 4 nuclear marker datasets, and a concatenated plastid (Cp) dataset. [5 files] - Maximum likelihood bootstrap (MLBS) trees (50% majority) for 4 nuclear marker datasets, and a concatenated plastid (Cp) dataset. [5 files] - Bayesian trees for 4 nuclear marker datasets, and a concatenated plastid (Cp) dataset. [5 files] - Species trees for the 4 nuclear markers (Nr) or nuclear markers plus a concatenated plastid dataset (Cp + Nr), where each accession was set as one species (pop), or each currently recognized species is one species (sp). [4 files] - Total 30 files