cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4755007
title: Representative metagenomics assembled genomes (rMAGs) from longitudinally sampled anoxic tank floating sludge islets of the Schifflange (Luxembourg) communal wastewater treatment plant

description: This archive contains the representative metagenomics assembled genomes (rMAGs) derived from the longitudinally sampled anoxic tank floating sludge islets of the Schifflange (Luxembourg) communal wastewater treatment plant. These rMAGs were assembled using both metagenomic and metatranscriptomic data. These rMAGs were used in the publications referenced as part of this record. Please refer to these publications for more information about raw data and details about methods.
description: - The initial upload (v0.1) was removed on 14/05/20201 because the compressed file was corrupted and did not contain all the content.
description: {"references": ["Mart\u00ednez Arbas, S., Narayanasamy, S., Herold, M. et al. Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics. Nat Microbiol 6, 123\u2013135 (2021). https://doi.org/10.1038/s41564-020-00794-8", "Herold, M., Mart\u00ednez Arbas, S., Narayanasamy, S. et al. Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance. Nat Commun 11, 5281 (2020). https://doi.org/10.1038/s41467-020-19006-2"]}
DOI: 10.5281/zenodo.4770179
title: Reconstructing atmospheric circulation and sea-ice extent in the West Antarctic over the past 200 years using data assimilation

description: This archive contains the climate reconstruction of surface changes in the Antarctic over 1800–2000 CE by combing the isotope-enabled Community Earth System Model with ice core and tree-ring width records through data assimilation. For a complete description of the experimental design, see the associated publication: Dalaiden, Q., Goosse, H., Rezsohazy, J. and Thomas, E.R. (2021). Reconstructing atmospheric circulation and sea-ice extent in the West Antarctic over the past 200 years using data assimilation, Climate Dynamics. Each NetCDF file corresponds to one variable. For each variable, along with the reconstruction, an estimation of the uncertainty is provided. All fields are anomalies relative to the 1941–1990 CE period. The variables included in the archive are: ASL-index: Amundsen Sea Low index<br> BAS-SIE: Sea-ice extent averaged over the Bellingshausen and Amundsen Sea sector<br> Ross-SIE: Sea-ice extent averaged over the Ross Sea sector<br> SAM-index: Southern Annular Mode index<br> SAT: Near-surface air temperature<br> SIC: Sea-ice concentration<br> SLP: Sea-level pressure<br> SNOW-ACC: Snow accumulation<br> 500hpa-ZG: 500-hPa geopotential height<br> 500hpa-AT: 500-hPa atmospheric temperature<br> 700hpa-AT: 700-hPa atmospheric temperature<br> 850hpa-AT: 850-hPa atmospheric temperature<br> 500hpa-Uwind: 500-hPa zonal winds<br> 700hpa-Uwind: 700-hPa zonal winds<br> 850hpa-Uwind: 850-hPa zonal winds<br> 500hpa-Vwind: 500-hPa meridional winds<br> 700hpa-Vwind: 700-hPa meridional winds<br> 850hpa-Vwind: 850-hPa meridional winds Please contact Quentin Dalaiden (quentin.dalaiden@uclouvain.be) for more information.
DOI: 10.5281/zenodo.4770178
title: Reconstructing atmospheric circulation and sea-ice extent in the West Antarctic over the past 200 years using data assimilation

description: This archive contains the climate reconstruction of surface changes in the Antarctic over 1800–2000 CE by combing the isotope-enabled Community Earth System Model with ice core and tree-ring width records through data assimilation. For a complete description of the experimental design, see the associated publication: Dalaiden, Q., Goosse, H., Rezsohazy, J. and Thomas, E.R. (2021). Reconstructing atmospheric circulation and sea-ice extent in the West Antarctic over the past 200 years using data assimilation, Climate Dynamics. Each NetCDF file corresponds to one variable. For each variable, along with the reconstruction, an estimation of the uncertainty is provided. All fields are anomalies relative to the 1941–1990 CE period. The variables included in the archive are: ASL-index: Amundsen Sea Low index<br> BAS-SIE: Sea-ice extent averaged over the Bellingshausen and Amundsen Sea sector<br> Ross-SIE: Sea-ice extent averaged over the Ross Sea sector<br> SAM-index: Southern Annular Mode index<br> SAT: Near-surface air temperature<br> SIC: Sea-ice concentration<br> SLP: Sea-level pressure<br> SNOW-ACC: Snow accumulation<br> 500hpa-ZG: 500-hPa geopotential height<br> 500hpa-AT: 500-hPa atmospheric temperature<br> 700hpa-AT: 700-hPa atmospheric temperature<br> 850hpa-AT: 850-hPa atmospheric temperature<br> 500hpa-Uwind: 500-hPa zonal winds<br> 700hpa-Uwind: 700-hPa zonal winds<br> 850hpa-Uwind: 850-hPa zonal winds<br> 500hpa-Vwind: 500-hPa meridional winds<br> 700hpa-Vwind: 700-hPa meridional winds<br> 850hpa-Vwind: 850-hPa meridional winds Please contact Quentin Dalaiden (quentin.dalaiden@uclouvain.be) for more information.
DOI: 10.15468/7rsbbv
title: Scorpions of the Horn of Africa (Arachnida Scorpiones) Part XXIII Buthus (Buthidae), with description of two new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kovařík, František, Šťáhlavský, František, Elmi, Hassan Sh Abdirahman (2020): Scorpions of the Horn of Africa (Arachnida Scorpiones) Part XXIII Buthus (Buthidae), with description of two new species. Euscorpius 307: 1-32, DOI: http://doi.org/10.5281/zenodo.4648379
DOI: 10.5281/zenodo.4770174
title: ORCID and the REF - UK Community Attitudes and Approaches Data

description: Three zoom polls were set during the UK ORCID Consortium meeting in May 2021 about participants and their institutional attitude and approach to ORCID within the framework of REF21 - this dataset contains the results of the three polls
DOI: 10.5281/zenodo.4770173
title: ORCID and the REF - UK Community Attitudes and Approaches Data

description: Three zoom polls were set during the UK ORCID Consortium meeting in May 2021 about participants and their institutional attitude and approach to ORCID within the framework of REF21 - this dataset contains the results of the three polls
DOI: 10.24378/exe.3204
title: Compressively sampling the optical transmission matrix of a multimode fibre (dataset)

description: This is the dataset used for the Li et al. (2021) article "Compressively sampling the optical transmission matrix of a multimode fibre" published in Light: Science and Applications.
description: Dataset to accompany the article 'Compressively sampling the optical transmission matrix of a multimode fibre'. Contains all of the raw data used to make the experimental figures in the article, along with Matlab programs to open the data.
description: The article associated with this dataset is available in ORE at: http://hdl.handle.net/10871/125529
DOI: 10.5281/zenodo.2677708
title: Supplementary Data: Testing the uniqueness of deep terrestrial life

description: .R script and data for analyses.
DOI: 10.5281/zenodo.2677707
title: Supplementary Data: Testing the uniqueness of deep terrestrial life

description: .R script and data for analyses.
DOI: 10.6084/m9.figshare.14605755
title: Contaminant Filtering Starting Count Table

description: Count table with averaged count table data from technical replicates and un-altered data from microcosm experiments. Final product exported from the CRO_drill_seqmerge_stats_reorg_avg script on line 298. Used as initial count table for contaminant filtering in the CRO_Drill_Contaminant_Removal script. Imported on line 28.
DOI: 10.6084/m9.figshare.14605755.v1
title: Contaminant Filtering Starting Count Table

description: Count table with averaged count table data from technical replicates and un-altered data from microcosm experiments. Final product exported from the CRO_drill_seqmerge_stats_reorg_avg script on line 298. Used as initial count table for contaminant filtering in the CRO_Drill_Contaminant_Removal script. Imported on line 28.
DOI: 10.5281/zenodo.4770037
title: Location of ground stations, targets and spacecraft for randomised study

description: Datasets for randomised study in article:<br> "Data sink selection using consensus leadership: improving target connectivity for a spacecraft constellation"
DOI: 10.6084/m9.figshare.14605722
title: R Script - Sequence Merging Stats, Reorganizing and Averaging Replicate Samples

description: R Script used to assess if the merging of sequence data from different sequencing centers was successful, and to reorganize count table data columns and average technical replicates.
DOI: 10.6084/m9.figshare.14605722.v1
title: R Script - Sequence Merging Stats, Reorganizing and Averaging Replicate Samples

description: R Script used to assess if the merging of sequence data from different sequencing centers was successful, and to reorganize count table data columns and average technical replicates.
DOI: 10.6084/m9.figshare.14605710
title: Merged Sequence Center MetaData

description: Basic meta data used to reorganize count table columns and perform ordinations to check that merging of sequence data from different sequence centers was successful. Used as input into CRO_drill_seqmerge_stats_reorg_avg script. Imported in line 25 of script.<br>
DOI: 10.6084/m9.figshare.14605710.v1
title: Merged Sequence Center MetaData

description: Basic meta data used to reorganize count table columns and perform ordinations to check that merging of sequence data from different sequence centers was successful. Used as input into CRO_drill_seqmerge_stats_reorg_avg script. Imported in line 25 of script.<br>
DOI: 10.6084/m9.figshare.14605692
title: Raw Taxonomy Table

description: Raw taxonomy file from initial 16S processing. Used as input into CRO_drill_seqmerge_stats_reorg_avg script. Imported on line 30 of script.<br>Also used as starting taxonomy file in the CRO_Drill_Contaminant_Removal R script. Imported on line 33 of script.
DOI: 10.6084/m9.figshare.14605692.v1
title: Raw Taxonomy Table

description: Raw taxonomy file from initial 16S processing. Used as input into CRO_drill_seqmerge_stats_reorg_avg script. Imported on line 30 of script.<br>Also used as starting taxonomy file in the CRO_Drill_Contaminant_Removal R script. Imported on line 33 of script.
DOI: 10.6084/m9.figshare.14605671
title: Raw Count Table

description: Raw count table from initial 16S processing. Used as input into CRO_drill_seqmerge_stats_reorg_avg script. Imported in line 21 of script.
DOI: 10.6084/m9.figshare.14605671.v1
title: Raw Count Table

description: Raw count table from initial 16S processing. Used as input into CRO_drill_seqmerge_stats_reorg_avg script. Imported in line 21 of script.
DOI: 10.6084/m9.figshare.12798296.v14
title: Data and code from Rizzuto et al. “Forage stoichiometry predicts home range size in a small terrestrial herbivore"

description: Data and code used in Rizzuto et al. "Forage stoichiometry predicts home range size in a small terrestrial herbivore”.<br>The “SupportingCode.html” file provides an in-depth description and discussion of our R workflow to estimate home range size of snowshoe hare and investigate its relationship with the ecological stoichiometry of preferred plant forage species. <br><br>If you would like to reproduce our analyses, you can recompile the R notebook “SupportingCode.Rmd”. This is a modular document that collects the output of 8 other R notebooks. For correct compilation of the SupportingCode.Rmd file, please organize the files in this repository on your machine as follows:<br>- all .Rmd and .R files in a "../Code/“ folder- all .csv files in a "../Data/" folder- all .tiff files in a “../Data/StDMs_Rasters/Ratios/" folder- unzip the SamplePoints.zip file in a "../Data/GridPoints/" folder- all .rds files in a "../Results/" folder<br>Where the Code, Data, and Results folder all share the same root.<br>Please note that access to some shapefiles used to produce the maps in the manuscript, SI, or Supporting Code document was regulated by agreements with the Government of Newfoundland and Labrador and the Federal Government of Canada. As such, they could not be publicly shared. This does not impact the analyses, only the production of some visual supporting material (e.g., study area maps). Please contact the corresponding author (M. Rizzuto) for any question. <br> See README.md for details on the repository’s contents.
DOI: 10.5281/zenodo.4742484
title: Supporting data for "Poly(ethylene glycol-block-2-ethyl-2-oxazoline) as cathode binder in lithium-sulfur batteries"

description: This is the dataset of electrochemical experiments for our publication "Poly(ethylene glycol-<em>block</em>-2-ethyl-2-oxazoline) as a binder for the positive electrode of lithium-sulfur batteries". This archive contains the raw data and scripts written in R used in the analysis and presentation of the results in this manuscript.
DOI: 10.5281/zenodo.4742483
title: Supporting data for "Poly(ethylene glycol-block-2-ethyl-2-oxazoline) as cathode binder in lithium-sulfur batteries"

description: This is the dataset of electrochemical experiments for our publication "Poly(ethylene glycol-<em>block</em>-2-ethyl-2-oxazoline) as a binder for the positive electrode of lithium-sulfur batteries". This archive contains the raw data and scripts written in R used in the analysis and presentation of the results in this manuscript.
DOI: 10.5281/zenodo.4751057
title: SMLM CEP152-Complex FITS Images

description: <strong> Experimental Data for the Paper titled "3D Structure from SMLM images using Deep Learning"</strong> The following files comprise 19 sets of 40,000 images, each set corresponding to a different rendering sigma as described in the paper. * Extracting * To extract the files, execute the following command (under Linux): <pre><code>cat paper_data.tar.gz.* | tar xzvf -</code></pre> * Organisation * The data are grouped into 19 directories, corresponding to the sigma value they were rendered at. These values are 10, 9, 8.1, 7.29, 6.56, 5.9, 5.31, 4.78, 4.3, 3.87, 3.65, 3.28, 2.95, 2.66, 2.39, 2.15, 1.94, 1.743, 1.57, 1.41 Each directory contains 40,000 FITS files - a NASA floating point image standard. The images are single channel and un-normalised. This structure is ready to be used * Recreating the data * If you have the time and compute power, you can regenerate this data set with as many or as few images as you prefer, at any sigma level. The original experimental data is available at &lt;fill in later&gt;. To recreate the data set you need to download the CEPRender program, available on github: https://github.com/OniDaito/CEPrender - details on how to use this program are available with the code.
DOI: 10.5281/zenodo.4751056
title: SMLM CEP152-Complex FITS Images

description: <strong> Experimental Data for the Paper titled "3D Structure from SMLM images using Deep Learning"</strong> The following files comprise 19 sets of 40,000 images, each set corresponding to a different rendering sigma as described in the paper. * Extracting * To extract the files, execute the following command (under Linux): <pre><code>cat paper_data.tar.gz.* | tar xzvf -</code></pre> * Organisation * The data are grouped into 19 directories, corresponding to the sigma value they were rendered at. These values are 10, 9, 8.1, 7.29, 6.56, 5.9, 5.31, 4.78, 4.3, 3.87, 3.65, 3.28, 2.95, 2.66, 2.39, 2.15, 1.94, 1.743, 1.57, 1.41 Each directory contains 40,000 FITS files - a NASA floating point image standard. The images are single channel and un-normalised. This structure is ready to be used * Recreating the data * If you have the time and compute power, you can regenerate this data set with as many or as few images as you prefer, at any sigma level. The original experimental data is available at &lt;fill in later&gt;. To recreate the data set you need to download the CEPRender program, available on github: https://github.com/OniDaito/CEPrender - details on how to use this program are available with the code.
DOI: 10.5523/bris.1m38wyz9gvzo52i2kpecr8w6kb
title: Registered reports funding models: a feasibility study

description: This was a qualitative feasibility study investigating stakeholders’ experiences of Registered Reports funding partnership (RRFP) models. The study investigated partnerships that have been established between research funders and academic journals to encourage the use of the Registered Reports research publishing format.
DOI: 10.5523/bris.lowf35tsgxav2rnb1jpvjvkm3
title: Online experimental medicine study of emotional bias training in healthy participants

description: This was an experimental study delivered online of emotional bias training (EBT) in a sample of healthy volunteers (n = 522), recruited via Prolific (prolific.co). The study aimed to investigate the effect of active EBT on a range of mental health and functional outcomes. The study protocol was pre-registered on the Open Science Framework (OSF) (osf.io/6xcu7).
DOI: 10.15468/7xp8bv
title: Khayae (Meliaceae) specierum Nomenclator

description: This dataset contains the digitized treatments in Plazi based on the original journal article Dipelet, Ulrich Gaël Bouka, Florence, Jacques, Doumenge, Charles, Loumeto, Jean Joël, McKEY, Doyle (2017): Khayae (Meliaceae) specierum Nomenclator. Adansonia 39 (1): 15-30, DOI: 10.5252/a2017n1a2
DOI: 10.7284/141427
title: Flowmeter data collected during research cruise AR45 using a Thiel Thiel Flowmeter instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141426
title: GNSS (Global Navigation Satellite System) data collected during research cruise AR45 using a Kongsberg DPS112 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141425
title: INS (Inertial Navigation System) data collected during research cruise AR45 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141431
title: Speedlog data collected during research cruise AR45 using a Furuno DS-60 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141436
title: SSV (Sound Speed Velocimeter) data collected during research cruise AR45 using a Valeport Thru-Hull SVS instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141437
title: Transmissometer data collected during research cruise AR45 using a Sea-Bird C-Star instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141438
title: Transmissometer data collected during research cruise AR45 using a Sea-Bird C-Star instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5523/bris.1jk6puznegx4121cjt72j1mln9
title: Online experimental medicine study of emotional bias training in participants taking SSRIs

description: This was an experimental study delivered online of emotional bias training (EBT) in a sample of participants (n = 212) currently taking selective serotonin re-uptake inhibitors (SSRIs) to manage anxiety and/or depression, recruited via Prolific (prolific.co). The study aimed to investigate the effect of active EBT on a range of mental health and functional outcomes. The protocol was pre-registered on the Open Science Framework (OSF) (osf.io/5z3wr).
DOI: 10.7284/141221
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise PE20-13 using a Hawaii UHDAS instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141222
title: Fluorometer data collected during research cruise PE20-13 using a WET Labs ECO-FL instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141220
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE20-13 using a Ashtech ADU800 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141223
title: Gyrocompass data collected during research cruise PE20-13 using a Sperry NAVIGAT X MK 1 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141225
title: Meteorological Station data collected during research cruise PE20-13 using a RM Young 92000 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141218
title: Transmissometer data collected during research cruise PE20-13 using a WET Labs C-Star instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141217
title: TSG (Thermosalinograph) data collected during research cruise PE20-13 using a Sea-Bird SBE-21 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.14611920
title: Supplementary Material for: Usefulness of Stress Echocardiography in Assessment of Dynamic Left Ventricular Obstructions: Case Series and Review of the Literature

description: Dynamic left ventricular outflow tract obstruction (DLVOTO) or midcavity obstruction in patients with structurally normal hearts is not uncommon in routine clinical practice and can cause significant symptoms mimicking coronary artery disease or heart failure. Although exercise echocardiography is the gold standard for assessing DLVOTO, dobutamine stress echocardiography (DSE) may be valuable diagnostic modality in patients who are unable to exercise or have an uninterpretable 12-lead electrocardiogram. We provide an updated overview of the relevant literature regarding prevalence, pathophysiology, clinical significance, and prognostic impact of DLVOTO and midcavity obstruction in structurally normal hearts. We also present a clinical series of 4 cases of DLVOTO and midcavity obstruction documented by DSE and discuss the value of different kinds of modern stress imaging modalities involving: (1) contrast-enhanced DSE to assess myocardial perfusion and inducible ischemia; (2) adenosine stress echocardiography to assess coronary flow reserve/microvascular dysfunction; and (3) functional imaging with deformation echocardiography to assess subclinical myocardial dysfunction in patients with structurally normal heart and without significant coronary disease. Based upon our own experiences and a critical review of the current literature, we will then present a practical guidance for management of DLVOTO and midcavity obstruction.