cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc281jsn
title: CCDC 2086851: Experimental Crystal Structure Determination

description: Related Article: Martin Nieger, Ephramin Gräff, Karl Heinz Dötz|2021|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc281vry
title: CCDC 2087160: Experimental Crystal Structure Determination

description: Related Article: Martin Nieger, Thorsten Klawonn, Karl Heinz Dötz|2021|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc281yq0
title: CCDC 2087252: Experimental Crystal Structure Determination

description: Related Article: Martin Nieger, Martin Werner, Karl Heinz Dötz|2021|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc281ys2
title: CCDC 2087254: Experimental Crystal Structure Determination

description: Related Article: Martin Nieger, Elisabeth Kühn, Karl Heinz Dötz|2021|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5066/p9nuzcgx
title: Demographic data for toxicant based trial eradication of brown treesnakes in the USGS Closed Population on Guam, 2016 - 2020

description: These data are mark-recapture data procured from conducting nocturnal visual surveys and live lure based trapping for brown treesnakes in the 5 hectare enclosure called USGS Closed Population or Northwest Field North (NWFN). In addition, tissue samples were collected from brown treesnakes in order to build genetic relationships among resident individuals. The population was undergoing acetaminophen based toxicant treatment from March 31 2017 - February 29 2020. Monitoring occurred from 15 October 2016 - 31 March 2020. The data file contains four sheets that report data from different pieces of the demographic response to toxicant applications. Sheet 1 - BTS Count, reports the number of brown treesnakes known to be in the population on a given date. Sheet 2 - IPM, reports demographic values that were used to inform an integrated projection model to estimate population response, elasticity and sensitivity to toxicants. Sheet 3 - Parents, defines and identifies parental relationships between within the 2017 - 2018 cohort of births to other known snakes in the population. Snakes Removed gives the numerical estimate of the number of snakes that were assumed to be have killed by a given toxicant application following failure to subsequently detect them.
DOI: 10.5517/ccdc.csd.cc2832t9
title: CCDC 2088340: Experimental Crystal Structure Determination

description: Related Article: Niu Tong|2021|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28vw01
title: CCDC 2111193: Experimental Crystal Structure Determination

description: Related Article: Martin Nieger, Lisa-Lou Gracia, Stefan Bräse|2021|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5066/p9o5f8du
title: Data on gall wasp abundance and biomass on valley oak and blue oak trees in California

description: Gall abundance and biomass was recorded on marked valley oak and blue oak individuals throughout California. Galls, mostly caused by cynipid gall wasps, were identified to species. Sampling effort per tree was recorded as the number of leaves searched for gall wasps. Leaves were taken from two branches per tree using pole pruners, and total galls per tree were summed in each observation. Annual observations of galls on each tree were made from 2000-2006.
DOI: 10.5066/p9o877cj
title: Lek Disturbance Buffer Analysis data, Western Colorado, Derived from Gunnison Sage Grouse Location Data 2010 - 2014

description: This data release consists of three files (Crawford_and_WGB_Location_Data_S1.csv, Lek_Dist_S2.csv, and Home_Range_Area_S3.csv). The first data set represents specifics about each GPS location representing temporal and spatial relationships used in our analysis including the Month, day and year and local time each location was collected along with distance between locations, elevation in meters, distance to nearest lek and corresponding Buffer designation. The second data set represents the distance for each of the Leks, by population, used in our analysis to the nearest active lek. Distance measure in meters. The third data set provides area in hectares for minimum convex polygon (MCP) seasonal home ranges by population. The &quot;All&quot; category represents the MCP for the entire GPS location data set for each population.
DOI: 10.5066/p9o9zma1
title: Genetic detection of Lake Sinai Virus in honey bees (Apis mellifera) and other insects

description: Lake Sinai Viruses (LSV) are common ribonucleic acid (RNA) viruses of honey bees (Apis mellifera) that frequently reach high abundance but are not linked to overt disease. LSVs are genetically heterogeneous and collectively widespread, but despite frequent detection in surveys, the ecological and geographic factors structuring their distribution in A. mellifera are not understood. Even less is known about their distribution in other species. Better understanding of LSV prevalence and ecology have been hampered by high sequence diversity within the LSV clade. We developed a new genetic assay that detects all currently known lineages. We also performed pilot metagenetic sequencing to quantify the diversity of LSV sequences. The resulting data are summarized herein.
DOI: 10.5066/p9ogpkhf
title: AZ Winter Sparrow Transect Survey Data 1999 to 2005

description: This dataset provides the winter bird transect survey data collected on seven sites in southeastern Arizona during the winters (January - March) of 1999-2001; and for two of those seven sites during the winters of 2003-2005.
DOI: 10.5066/p9ozagyu
title: Gene annotations for the hoary bat (Lasiurus [Aeorestes] cinereus) and alignments with other bat gene sets for evolutionary analysis

description: Bats of the genus Lasiurus occur throughout the Americas and have diversified into at least 20 species among three subgenera. The hoary bat (Lasiurus cinereus, or synonymously, Aeorestes cinereus) is highly migratory and ranges farther across North America than any other wild mammal. Despite the ecological importance of this species as a major insect predator, and the particular susceptibility of lasiurine bats to wind turbine strikes, our understanding of hoary bat ecology, physiology, and behavior remains poor. To better understand adaptive evolution in this lineage, we used whole-genome sequencing to identify protein-coding sequence and explore signatures of positive selection. Gene models were predicted with Maker and compared to seven well-annotated, phylogenetically representative species. Of 9,447 single-copy orthologous groups that met evaluation criteria, 150 genes had a significant excess of nonsynonymous substitutions along the L. cinereus branch (P less than 0.001 after manual review of alignments). Analysis of mouse orthologs with DAVID did not identify significant enrichment of ontology categories, but selected genes as a group had biased expression, most strongly in thymus tissue. We identified 23 selected genes with reported immune functions as well as a divergent paralog of Steep1 within suborder Yangochiroptera. Seventeen genes had roles in lipid and glucose metabolic pathways, partially overlapping with 15 mitochondrion-associated genes. The genomic distribution of positively selected genes differed significantly from background expectation by discrete Kolmogorov-Smirnov test (P less than 0.001). The top three physical clusters all coincided with islands of conserved synteny predating Mammalia, the largest of which shares synteny with the human cat-eye critical region (CECR) on 22q11.
DOI: 10.5066/p9pd6huw
title: Intraguild predation dataset for arthropods on tarweed plants

description: Data on intraguild predation of arthropods on the tarweed Hemizonia congesta. Arthropod counts (predators, herbivores, etc) and counts of entrapped arthropod corpses on focal plants in an experiment manipulating arthropod carrion amount and plant damage. Quantifications of plant damage and reproduction are presented.
DOI: 10.5519/qd.eo51eoql
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1005 records)
DOI: 10.5066/p9pi7vey
title: Data for modeling fountain grass and bishop's goutweed in the contiguous US

description: This data bundle contains the merged data sets to create models for bishop's goutweed and fountaingrass using the VisTrails:SAHM [SAHM 2.1.0]. We developed species distribution models for both species following a workflow designed to balance automation and human intervention to produce models for invasive plant species of concern to U.S. land managers. Location data came from existing databases aggregating species occurrence information. Predictors came from a national library of potential environmental variables based on what environmental factors might limit plant species' distributions in different parts of the U.S. including climatic, topographic, soil, land use, and anthropogenic factors. The outputs of these models and those for other species following the same methods will be available on the Invasive Species Habitat (INHABIT) website (https://gis.usgs.gov/inhabit/dashboard_dev.rmd). Each of the four CSV files contain the exact same fields. The bundle documentation files are: 1) '_archive_bundle_metadata.xml' (this file) which contains FGDC metadata describing the fields in the CSV files 2) 'MDS_fountaingrass_KDEbackground.csv' containing the merged data set used to create the fountaingrass models with background data generated based on a KDE bias surface 3) 'MDS_fountaingrass_targetbackground.csv' merged data set used to create the fountaingrass models with target background data 4) 'MDS_goutweed_KDEbackground.csv' containing the merged data set used to create the bishop's goutweed models with background data generated based on a KDE bias surface 5) 'MDS_goutweed_targetbackground.csv' containing the merged data set used to create the bishop's goutweed models with target background data
DOI: 10.5066/p9qcqzk5
title: Data on cone production in pinyon pine in the Southwestern USA from 2003-2016

description: Data were collected on pinyon pine cone production using the cone scar method (Redmond et al 2016 Forest Ecology and Management) from 2003-2016 among sites in the Southwest USA. Long-term weather data (Vapor Pressure Deficits and monsoonality) were associated with cone scar data to assess weather-correlates of cone production.
DOI: 10.23729/f749822b-be9e-45ef-b631-9a6bc855407a
title: Kierroksia biopeittoon biocarbons

description: Different types of biocarbons (biohiili, BH), imaged at different size scales (laatikko = box, purkki = jar, smaller than box, HR = High Resolution). BH1 is spruce biocarbon, BH2 is sludge and wood chips, BH3 is demolition tree in two different grain sizes. Collective project preview entry: https://doi.org/10.23729/c6c8168e-1feb-472d-969b-bb8bdadcb609 Preview dataset found at https://doi.org/10.23729/b2951ba1-f822-4dd0-8b81-ef79226ccb34 . To obtain data, please contact fairdata-pas@gtk.fi .
DOI: 10.5066/p9qcskrr
title: Dataset from 2015-2016 thermal and behavior monitoring of Argentine giant tegus in Everglades, Florida

description: Thermal data collected from iButton temperature loggers implanted into research animals (Argentine giant tegus) and in their surrounding environment. Tegus undergo winter dormancy (hibernation) to cope with colder temperatures, and we studied the thermal habits of wild tegus within their invaded range in southern Florida, USA. We used radiotelemetry and trail cameras to verify dates of above-ground behaviors (active, basking, non-hibernating) and used temperature dataloggers to monitor surface (2 sun-exposed [Te] and 1 shaded [Ts]), 3 ambient (Ta), 19 subsurface ground (Th), and 22 internal body (Tb) temperatures of a population of free-ranging tegus over several seasons (46 weeks from 2015-2016). We recorded tegu morphometrics at capture. These data are limited and inferences beyond the scope of this project are not recommended.
DOI: 10.5066/p9qtsahy
title: Visual Surveys Rapid Response Saipan 2016

description: Nocturnal visual encounter survey data conducted by 29 searchers over 17 transects obtained during a Brown Treesnake rapid response deployment to island of Saipan in 2016. Surveys took place in the vicinity of the Saipan airport and Dandan village (ca. 15.127&deg;N, 145.735&deg;E) from 06 January to 13 March 2016, 6-7 nights/week but with a break in surveying from 26 January through 21 February. During Brown Treesnake searches over 386.8 kilometers, we collected data on selected vertebrate taxa (lizards and small mammals, both potential snake prey) recorded from survey transects with similar vegetation structure (secondary forest dominated by the introduced leguminous tree Leucaena leucocephala; emergent trees were partially denuded from typhoon Soudelor which had passed over Saipan on 02 August 2015).
DOI: 10.5066/p9qtwgp4
title: Data on black-tailed prairie dog body condition, annual and monthly survival, and reproduction on sites treated or not treated with 0.005% fipronil grain for flea control and plague mitigation in South Dakota, USA, 2017-2020

description: We live-trapped and sampled black-tailed prairie dogs in Badlands National Park and Buffalo Gap National Grassland, South Dakota, 2017-2020. Sampling occurred on sites treated with 0.005% fipronil grain for flea control and plague mitigation, and non-treated sites functioning as experimental baselines. Prairie dogs were trapped, sexed, aged (adult or juvenile by size), weighed to the nearest 5 grams, and marked with ear tags for permanent identification. The length of each prairie dog's right hind foot was measured to the nearest millimeter, and the animal's body condition was indexed as a mass:foot ratio. We evaluated effects of fipronil grain on prairie dog body condition, monthly and annual survival, and reproduction. The first [...]
DOI: 10.5066/p9rl64c8
title: Ovary mass and stable hydrogen isotope data for resident and migratory female dark-eyed juncos

description: This dataset includes ovary mass and stable hydrogen isotope compositions of feathers and claws from resident and migratory female dark-eyed juncos (Junco hyemalis) collected during early spring at Mountain Lake Biological Station, Pembroke, Virginia. A total of 18 migrant and 15 resident female dark-eyed juncos, a songbird that exhibits seasonal sympatry, were caught during March-April. Stable hydrogen isotopes were used to infer relative breeding and wintering latitude of migrants. Ovary mass served as a proxy for reproductive development. These data were used to explore whether seasonal sympatry fosters or inhibits genetic divergence between migrants and residents and to the extent that this depends on their respective timing of reproduction. There are two files in this dataset: 1) a comma delimited machine-readable file (*.csv) that represents the data dictionary, and 2) a comma delimited machine-readable file (*.csv) containing the data.
DOI: 10.5066/p9rrwxl6
title: Attributed North American Bat Monitoring Program (NABat) Master Sample and Grid-Based Sampling Frame

description: The NABat sampling frame is a grid-based finite-area frame spanning Canada, the United States, and Mexico consisting of N total number of 10- by 10-km (100-km2) grid cell sample units for the continental United States, Canada, and Alaska and 5- by 5-km (25km2) for Hawaii and Puerto Rico. This grain size is biologically appropriate given the scale of movement of most bat species, which routinely travel many kilometers each night between roosts and foraging areas and along foraging routes. A Generalized Random-Tessellation Stratified (GRTS) Survey Design draw was added to the sample units from the raw sampling grids (https://doi.org/10.5066/P9M00P17). This dataset represents the final 2018 NABat Sampling grid with various landscape level attributes added (country, state/territory, county, percent water, and land ownership/management). Grid cells that fall outside the area of interest were removed from each individual sampling frame.
DOI: 10.5066/p9s1uial
title: Tree-Ring Data Collected in 2017 and 2018 From Cottonwood Trees Along the Wind River in Wind River Indian Reservation, Wyoming

description: This dataset contains tree-ring data from plains cottonwood (Populus deltoides subsp. monilifera), narrowleaf cottonwood (Populus angustifolia) and their hybrids collected from floodplains within the Wind River Indian Reservation, Wyoming in 2017 and 2018. Samples were collected from trees at three sites: the Wind River upstream of Boysen Reservoir (latitude 43.127 N, longitude -108.232 W), the Wind River downstream of Diversion Dam (latitude 43.219 N, longitude -108.940 W) and Owl Creek near Arapaho Ranch, latitude 43.725 N, longitude -108.570 W. There are 3 files. Cottonwood_Wind_Tree_Data.csv contains descriptive information about each of the sampled trees, Cottonwood_Wind_Ring_Widths contains the tree-ring widths in Tucson format, and Cottonwod_Wind_READ_Me.txt duplicates some of the metadata in this metadata file in a format that is easy to read.
DOI: 10.5066/p9s5m1b4
title: Riparian woody stem densities and landscape variables along the South Platte River, Colorado, United States, 2011-2016

description: This data set includes riparian woody stem counts, stem densities and landscape variables collected at 28 sites along the South Platte River, Colorado, United States from 2011-2016. Riparian woody stem densities were collected in the field during 2011, 2015, and 2016, and include the species Ulmus pumila, Populus deltoides, Salix amygdaloides, Fraxinus pennsylvanica, and Elaeagnus angustifolia. For Ulmus pumila, data are included for total stem density and stem densities of three size classes: saplings, medium, and large trees. Landscape variables at each site include: farmstead density, population density, upland Ulmus pumila density, bridge density, road density, active river channel, floodplain area, upstream cumulative drainage area, and mean annual river flow.
DOI: 10.5066/p9stnbge
title: Offspring, dam, sire pedigree assignments in a managed population of Brown Treesnakes on Guam

description: In this dataset offspring are assigned to a dam and sire using information from single nucleotide polymorphisms (SNPs) from previously published pedigree reassignments of Brown Treesnakes within the U.S. Geological Survey's Brown Treesnake study enclosure on Northwest Field of Andersen Air Force Base, Guam (Levine and Yackel Adams 2021 and Nafus 2021) to update the overall pedigree dataset for snakes (2009-2018). Genomic pedigree reconstruction can assign offspring to parents in invasive species for which mating, and reproduction are difficult to study.
DOI: 10.5066/p9sx2fcx
title: Polychlorinated biphenyl concentrations and lipid content in riparian spiders at the Ashtabula River Area of Concern, USA

description: We measured polychlorinated biphenyl (PCB) concentrations in two taxa of riparian spiders from nine sites in 2011 at the Ashtabula River Area of Concern. We analyzed the extracts for 122 congeners following EPA method SW846 Method 8270D using gas chromatography mass spectrometry in the selective ion monitoring (SIM) mode. All target compounds were quantified using the method of internal standards, and all results were reported in ng/g (parts per billion) wet weight. Congener concentrations were summed to arithmetically calculate totals for individual homolog groups (groups of congeners that share the same number of chlorine atoms on the biphenyl ring) and for total PCBs. The samples were also analyzed for lipid content.
DOI: 10.5066/p9tik3jp
title: Californian crop pests, pesticide applications, and phylogenetic information of crops

description: Information on pesticide applications, crop pests, and phylogenetic affinities between Californian crops and regional native plants were compiled. Data was collected to inform models of pesticide applications and host use of pests among California's 93 major crops. Pesticide data was assembled from California Department of Pesticide Regulation records, pest information was assembled from the California Integrated Pest Management database, and phylogenetic affinities were based on a supertree of plants in the Jepson Manual assembled based on the Zanne et al 2014 mega-phylogeny of seed plants.
DOI: 10.5066/p9tjwltg
title: Vegetation measurements of production and offtake in cottonwood communities of the Great Sand Dunes ecosystem, Colorado, 2005-2009.

description: These data provide measurements of cottonwood production and herbaceous production in cottonwood communities of the Great Sand Dunes National Park ecosystem in the San Luis Valley of Colorado, from 2005-2009. These data also include cottonwood browsing rates. The study area was stratified into 2 ungulate strata: areas with elk and bison herbivory, and areas with just elk herbivory (bison not present). Ungulate exclosures were erected in 2005, with n= 4 exclosures and paired grazed sites in elk-only areas, and n=4 exclosures and paired grazed sites in elk + bison areas. We measured sapling density inside and outside exclosures, height of cottonwoods inside and outside of exclosures, herbaceous production, baseline browsing rate of cottonwoods in summer 2005 (pre-treatment) and subsequent years of mean percent cottonwood twig utilization. We also present Index depth to water (cm), measured at nearest well to site at time of maximal water table height (late June) for spring/summer 2007.
DOI: 10.5066/p9tmpe76
title: Data collected about behavioral responses to high temperatures in desert grassland bird in 2007, 2011-2013

description: These data include information about the year, date, time, and shrub identifying number where the following data were collected - the number of Grasshopper Sparrows that were flushed from the shrub, the air temperature (not in direct sun), relative humidity (not in direct sun), ground temperature in sun, ground temperature beneath shrub, air temperature in the shrub, and relative humidity within the shrub.