cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13553712
title: Altenberg–Teplice Caldera sourced Westphalian fall tuffs in the central and western Bohemian Carboniferous basins (eastern Variscan belt)

description: Timing of magmatic activity of the late-Variscan Altenberg–Teplice Caldera was rather vaguely constrained. In this paper, we present five new laser ablation inductively coupled plasma mass spectrometry (LA–ICP–MS) U–Pb zircon ages, which along with published data indicate ~13 Myr lifetime. Formation of the Altenberg–Teplice Caldera commenced with the emplacement of the pre-caldera pluton at ~325–319 Ma, and terminated with the intrusion of the syn-collapse ring dykes and post-collapse granites at ~312 Ma. The main ignimbrite volcanism in the area of the ATC occurred at ~318–313 Ma and peaked at ~314–313 Ma. The latter corresponds to the age of the caldera-forming eruptions, which sourced the extra-caldera pyroclastic deposits. The same age yielded the rhyolite dyke swarm that fed the ignimbrite eruptions. Some pyroclastic fall deposits preserved in adjacent Carboniferous basins indicate similar ages of ~314–312 Ma including the widespread ~314 Ma Bělka tuff, which represents the main chronostratigraphic marker of this area. Its thickness and grain size progressively degrease from the ATC towards S and SW. This, together with the isopach map distribution and the available geochronological data suggest that the Bělka tuff was sourced from the Altenberg–Teplice Caldera. The Bělka tuff distribution and its association with the extra-caldera ignimbrites of the Altenberg–Teplice Caldera imply that this tuff is a co-ignimbrite fall deposit that accompanied pyroclastic density currents sourced from the caldera. The calculated minimum volume of fallout ash-tuffs and extra-caldera ignimbrite facies contribute 30 km<sup>3</sup> to the 350 km<sup>3</sup> (dense rock equivalent) estimates of the total Altenberg–Teplice Caldera products. Such volumes correspond well to similar modern analogues of collapse calderas of intermediate size.
DOI: 10.6084/m9.figshare.13499339.v1
title: Subduction-related metasomatism in the lithospheric mantle beneath the Calatrava volcanic field (central Spain): constraints from lherzolite xenoliths of the Cerro Gordo volcano

description: Two types of lherzolite xenoliths appear in the Cerro Gordo maar from the Cenozoic Calatrava volcanic field. Hydrous lherzolites (group-1) show a major proportion of metasomatic amphibole (&gt;5 modal%), whereas group-2 lherzolites have only accessory amounts or an absence of amphibole. Group-1 lherzolites show a higher LREE-Ba-Sr-Th content in whole-rock composition compared to group-2 lherzolites. The most depleted group-2 lherzolite xenoliths indicate a low degree of partial melting (&lt;5%) of the mantle source, similarly to other Calatrava xenolith suites. Trace element content combined with Sr-Nd isotopic ratios suggests a protolith mantle source with the characteristics of a depleted MORB Mantle (DMM type). This mantle protolith was later refertilized by subduction-related metasomatism, causing the formation of modal amphibole and obliterating the original MORB-like chemical features in the most transformed xenoliths (group-1 lherzolites). The entrainment of these mantle fragments in the volcanic alkaline magma promoted amphibole breakdown reactions during its transport, generating silica-rich glasses with the associated unusual formation of secondary orthopyroxene. The suprasubduction character of the protolithic mantle combined with previously published Re-Os model ages in nearby lherzolite xenoliths suggests that the sampled lherzolites could represent the old Cadomian mantle wedge of the Central Iberian zone.
DOI: 10.6084/m9.figshare.13553712.v1
title: Altenberg–Teplice Caldera sourced Westphalian fall tuffs in the central and western Bohemian Carboniferous basins (eastern Variscan belt)

description: Timing of magmatic activity of the late-Variscan Altenberg–Teplice Caldera was rather vaguely constrained. In this paper, we present five new laser ablation inductively coupled plasma mass spectrometry (LA–ICP–MS) U–Pb zircon ages, which along with published data indicate ~13 Myr lifetime. Formation of the Altenberg–Teplice Caldera commenced with the emplacement of the pre-caldera pluton at ~325–319 Ma, and terminated with the intrusion of the syn-collapse ring dykes and post-collapse granites at ~312 Ma. The main ignimbrite volcanism in the area of the ATC occurred at ~318–313 Ma and peaked at ~314–313 Ma. The latter corresponds to the age of the caldera-forming eruptions, which sourced the extra-caldera pyroclastic deposits. The same age yielded the rhyolite dyke swarm that fed the ignimbrite eruptions. Some pyroclastic fall deposits preserved in adjacent Carboniferous basins indicate similar ages of ~314–312 Ma including the widespread ~314 Ma Bělka tuff, which represents the main chronostratigraphic marker of this area. Its thickness and grain size progressively degrease from the ATC towards S and SW. This, together with the isopach map distribution and the available geochronological data suggest that the Bělka tuff was sourced from the Altenberg–Teplice Caldera. The Bělka tuff distribution and its association with the extra-caldera ignimbrites of the Altenberg–Teplice Caldera imply that this tuff is a co-ignimbrite fall deposit that accompanied pyroclastic density currents sourced from the caldera. The calculated minimum volume of fallout ash-tuffs and extra-caldera ignimbrite facies contribute 30 km<sup>3</sup> to the 350 km<sup>3</sup> (dense rock equivalent) estimates of the total Altenberg–Teplice Caldera products. Such volumes correspond well to similar modern analogues of collapse calderas of intermediate size.
DOI: 10.5281/zenodo.6227350
title: Hypoplectrus randallorum SPAdes preassembly

description: .
DOI: 10.5281/zenodo.6227349
title: Hypoplectrus randallorum SPAdes preassembly

description: .
DOI: 10.5281/zenodo.6202204
title: Dataset related to article "Deciphering the Labyrinthine System of the Immune Microenvironment in Recurrent Glioblastoma: Recent Original Advances and Lessons from Clinical Immunotherapeutic Approaches"

description: raw data supporting study mentioned at title
description: Study supported by private funding RP10: Fondo di Gio-Onlus e Associazione Pinella Caspanello Brancatelli Onlus
DOI: 10.5281/zenodo.6202203
title: Dataset related to article "Deciphering the Labyrinthine System of the Immune Microenvironment in Recurrent Glioblastoma: Recent Original Advances and Lessons from Clinical Immunotherapeutic Approaches"

description: raw data supporting study mentioned at title
description: Study supported by private funding RP10: Fondo di Gio-Onlus e Associazione Pinella Caspanello Brancatelli Onlus
DOI: 10.6084/m9.figshare.19214430
title: SPARK Educational Psychology Data.pdf

description: The data includes comprehensive final exam scores from the treatment and control group after a semester-long testing method was given to the treatment group. The students' ACT scores are included for analyzing similarities in the groups.
DOI: 10.6084/m9.figshare.14356460
title: Data from 'Cross-Instrument Comparison of MapCam and OVIRS on OSIRIS-REx'

description: Tabular results and instrument ratio maps
DOI: 10.6084/m9.figshare.14356460.v1
title: Data from 'Cross-Instrument Comparison of MapCam and OVIRS on OSIRIS-REx'

description: Tabular results and instrument ratio maps
DOI: 10.6084/m9.figshare.14847093.v1
title: Positive controls

description: Data Record 1 contains positive controls and associated information for two-way drug-drug interactions.
DOI: 10.6084/m9.figshare.14847090
title: Single-drug adverse drug reactions, indications and negative controls

description: This file contains two sheets: the first one (Tab 1) contains positive drug-event associations (ie., adverse drug reactions for single drugs and drug indications); the second one (Tab 2) contains negative drug-event associations (i.e., negative controls).
DOI: 10.6084/m9.figshare.14847093
title: Positive controls

description: Data Record 1 contains positive controls and associated information for two-way drug-drug interactions.
DOI: 10.6084/m9.figshare.14847096
title: Drug mappings

description: Data Record 4 contains mappings of drug names to RxNorm and RxNormExtension-OHDSI Ingredients.
DOI: 10.6084/m9.figshare.14847099.v1
title: Negative controls

description: Data Record 2 contains negative controls for drug-drug interactions.
DOI: 10.6084/m9.figshare.14847099
title: Negative controls

description: Data Record 2 contains negative controls for drug-drug interactions.
DOI: 10.6084/m9.figshare.14847102
title: Event mappings

description: Data Record 5 contains mappings of text descriptions for events to MedDRA.
DOI: 10.6084/m9.figshare.14847102.v1
title: Event mappings

description: Data Record 5 contains mappings of text descriptions for events to MedDRA.
DOI: 10.6084/m9.figshare.14847090.v1
title: Single-drug adverse drug reactions, indications and negative controls

description: This file contains two sheets: the first one (Tab 1) contains positive drug-event associations (ie., adverse drug reactions for single drugs and drug indications); the second one (Tab 2) contains negative drug-event associations (i.e., negative controls).
DOI: 10.6084/m9.figshare.14847096.v1
title: Drug mappings

description: Data Record 4 contains mappings of drug names to RxNorm and RxNormExtension-OHDSI Ingredients.
DOI: 10.6084/m9.figshare.17695643
title: Contrasting strategies for sucrose utilization in a floral yeast clade_Supplemental_Material

description: Sequence, alignment and tree files used for the construction of the Species Trees (Validation tree and Final Species Tree represented in Fig.1) and individual protein Trees presented in "Contrasting strategies for sucrose utilization in a floral yeast clade".
DOI: 10.6084/m9.figshare.17695643.v5
title: Contrasting strategies for sucrose utilization in a floral yeast clade_Supplemental_Material

description: Sequence, alignment and tree files used for the construction of the Species Trees (Validation tree and Final Species Tree represented in Fig.1) and individual protein Trees presented in "Contrasting strategies for sucrose utilization in a floral yeast clade".
DOI: 10.5281/zenodo.6227751
title: Epistasis at the SARS-CoV-2 RBD Interface and the Propitiously Boring Implications for Vaccine Escape

description: This repository includes: SI Appendix GISAID Acknowledgements An example resfile RosettaScripts .xml files Complex conformations (50 each) for WT/Delta/Gamma/Omicron; antibody (NAb) and receptor (ACE2)
DOI: 10.5281/zenodo.5297698
title: Epistasis at the SARS-CoV-2 RBD Interface and the Propitiously Boring Implications for Vaccine Escape

description: This repository includes: SI Appendix GISAID Acknowledgements An example resfile RosettaScripts .xml files Complex conformations (50 each) for WT/Delta/Gamma/Omicron; antibody (NAb) and receptor (ACE2)
DOI: 10.25345/c5fq9q62j
title: MassIVE MSV000088892 - GNPS_Homechem_study_GCMS_data_longitudinal_volatilome
title: For temporal volatilome tracking (temporal study), sampling was performed in a houses central location for the duration of the study collecting samples after key scripted activities and across the entire campaign duration. The sampler consisted of polydimethylsiloxane (PDMS) which can absorb volatile and semi-volatile chemicals across a wide range of partition coefficients. The chemicals were then analyzed in both targeted and non-targeted fashion by gas chromatography high-resolution mass spectrometry (GC-HRMS) for comprehensive detection of chemical constituents.
DOI: 10.18739/a2c53f28k
title: Scripps carbon dioxide (CO2) program data, Alert, Canada (1985-present) and Point Barrow, Alaska (1961-1964 and 1974-present)

description: This dataset consists of time-series measurements of carbon dioxide (CO2) concentration and CO2 isotopic composition (carbon isotope ratio (13C/12C) and oxygen isotope ratio (18O/16O)) from flasks collected at two stations: (1) Utqiaġvik (Barrow), Alaska and (2) Alert, Nunavut, on the north-eastern tip of Ellesmere Island. The flasks are collected by staff from the Barrow Atmospheric Baseline Observatory, operated by Global Monitoring Laboratory of the National Oceanographic and Atmospheric Administration and by staff from the Neil Trivett Global Atmospheric Watch Observatory operated by Environment and Climate Change Canada. The flasks are returned to the Scripps Institution of Oceanography at University of California (UC) San Diego where they are analyzed for CO2 concentration using infrared analysis and analyzed for CO2 isotopes using magnetic sector mass spectrometry. The measurements are reported on scales for CO2 concentration and CO2 isotopic composition that are maintained at the Scripps Institution of Oceanography. These datasets are among the longest ongoing times series of CO2 and its isotopes in the Arctic. These datasets are relevant for assessing Arctic sources and sinks of carbon dioxide and biogeochemical changes, such as large-scale changes in net ecosystem productivity and water-use efficiency, at high northern latitudes. Routine flask collections began in 1974 at Barrow, and 1985 at Alert. Isotopic analyses in flasks from Barrow started in 1982. Prior to 1992, the isotopic measurements were made at the laboratory of Professor. Wim Mook in Groningen.
DOI: 10.5517/ccdc.csd.cc27gwvg
title: CCDC 2069896: Experimental Crystal Structure Determination

description: Related Article: Gourab Karmakar, Alpa Y. Shah, Adish Tyagi, A. P. Wadawale, G. Kedarnath, N. Naveen Kumar, Jitendra Bahadur|2022|New J.Chem.|46|3871|doi:10.1039/D1NJ06167D
DOI: 10.18739/a27d2q84f
title: Atmospheric flask O2/N2 and CO2 datasets – Scripps Institution of Oceanography data from Alert, Canada (1989-present), Barrow Alaska (2010-present) and Cold Bay, Alaska (1995-present)

description: This dataset consists of time-series measurements of oxygen-to-nitrogen (O2/N2) ratio and carbon dioxide (CO2) from flasks collected at (1) Utqiaġvik (Barrow), Alaska (2) Alert, Nunavut, on the north-eastern tip of Ellesmere Island, and (3) Cold Bay Alaska. The flasks are collected by staff from the Barrow Atmospheric Baseline Observatory, operated by Global Monitoring Laboratory of the National Oceanographic and Atmospheric Administration and by staff from the Neil Trivett Global Atmospheric Watch Observatory operated by Environment and Climate Change Canada, and by staff of the United States (US) Weather Bureau stationed in Cold Bay Alaska. The flasks are returned to the Scripps Institution of Oceanography at University of California (UC) San Diego where they are analyzed for O2/N2 ratio using an interferometric O2 analyzer and CO2 concentration using infrared analysis. The measurements are reported on scales for O2/N2 ratio and CO2 concentration that are maintained at the Scripps Institution of Oceanography. These datasets are among the longest ongoing times series of O2/N2 in the Arctic. These datasets are relevant for assessing sources and sinks of O2 and biogeochemical changes in the polar oceans, such as O2 releases from plankton productivity and winter-time O2 uptake from ventilation of subsurface waters.
DOI: 10.5281/zenodo.6227755
title: Harrastevalokuvaajien henkilökohtainen tiedonhallinta, data

description: Original data regarding a study on the field of information management.
DOI: 10.5281/zenodo.6227754
title: Harrastevalokuvaajien henkilökohtainen tiedonhallinta, data

description: Original data regarding a study on the field of information management.
DOI: 10.25345/c59z90c85
title: MassIVE MSV000088893 - TurnoveR: A Skyline External Tool for Analysis of Protein Turnover in Metabolic Labeling Studies
title: In spite of its central role in biology and disease, protein turnover is a largely understudied aspect of most proteomic studies due to the complexity of computational workflows that analyze in-vivo turnover rates. To address this need, we developed a new computational tool, TurnoveR, to accurately calculate protein turnover rates from mass spectrometric analysis of metabolic labeling experiments in Skyline, a free and open-source proteomics software platform. TurnoveR is a straightforward graphical interface that enables seamless integration of protein turnover analysis into a traditional proteomics workflow in Skyline, allowing users to take advantage of the advanced and flexible data visualization and curation features built into the software. The TurnoveR computational pipeline performs critical steps to determine protein turnover rates, including isotopologue demultiplexing, precursor-pool correction, statistical analysis, and generation of data reports and visualizations. This workflow is compatible with many mass spectrometric platforms and re-capitulates turnover rates and differential changes in turnover rates between treatment groups calculated in previous studies. We expect that the addition of TurnoveR to the widely used Skyline proteomics software will facilitate wider utilization of protein turnover analysis in highly relevant biological models, including aging, neurodegeneration, and skeletal muscle atrophy.
DOI: 10.5281/zenodo.4676481
title: HPCC FPGA Evaluation Data

description: This archive contains configuration files, scripts, and full FPGA bitstreams for the execution of the HPCC FPGA benchmarks over multiple FPGAs. Moreover, the raw output files of the measurements are also provided. Update 1.1: Add build configuration, scripts, and output files of additional experiments. Update 1.2: Add artifacts for Xilinx Alveo U280
DOI: 10.6084/m9.figshare.19203248
title: TMA clinical data figshare.xlsx

description: TMA data for KIM-1 biomarker study
DOI: 10.6084/m9.figshare.19203248.v2
title: TMA clinical data figshare.xlsx

description: TMA data for KIM-1 biomarker study
DOI: 10.6084/m9.figshare.19203248.v1
title: TMA clinical data figshare.xlsx

description: TMA data for KIM-1 biomarker study
DOI: 10.5281/zenodo.6227898
title: Wheat stem rust back in Europe: Diversity, prevalence and impact on host resistance

description: SSR genotypes of European <em>Puccinia graminis</em> isolates based on 17 SSR markers
DOI: 10.5519/qd.bfftvsb4
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5029462 records)
DOI: 10.5066/p9ca4o8i
title: Bridge-Site Study Data for Selected Highway Crossings in Mississippi, 2020

description: The U.S. Geological Survey (USGS) works closely with the Mississippi Department of Transportation (MDOT) to provide information to be used by the MDOT for design of highway-drainage structures. MDOT spends millions of dollars annually for highway construction. Streamflow records, hydrologic analyses of basins, and hydraulic analyses of flooding potential at proposed highway crossings help the MDOT to make more informed decisions on the use of highway construction funding. Flood-frequency and hydraulic characteristics at highway crossings are determined from historical flood-elevation data recovered by the USGS, cross-section data, and correlations with data from nearby gaging stations. Additional streamflow data are collected for ungaged sites when substantial flooding occurs in an area of interest to MDOT. This information not only provides the basis for the design of highways and drainage structures, but also is used by local agencies and the public as a guide in flood-plain management. Data for five sites in Mississippi that were studied during the State fiscal year 2020 (July 1, 2019, to June 30, 2020) are provided in this data release. The geospatial dataset includes one point feature class shapefile with associated FGDC-compliant metadata representing selected basin characteristics and estimates of eight flood-frequency peak streamflows with corresponding stages, or water-surface elevations for five sites in Mississippi. Flood-frequency streamflows were determined using methods described by Anderson (2018). Water-surface elevations were determined using methods described by Rantz (1982a, 1982b). Also included are input files of the step-backwater model described by Shearman (1990). Anderson, B.T., 2018, Flood frequency of rural streams in Mississippi, 2013: U.S. Geological Survey Scientific Investigations Report 2018--5148, 12 p., [Also available at https://doi.org/10.3133/sir20185148]. Rantz, S.E., and others, 1982a, Measurement and Computation of Streamflow--vol.1, Measurement of Stage and Discharge: U.S. Geological Survey Water-Supply Paper 2175, p. 1-284, [Also available at https://doi.org/10.3133/wsp2175]. Rantz, S.E., and others, 1982b, Measurement and Computation of Streamflow--vol.2, Computation of Discharge: U.S. Geological Survey Water-Supply Paper 2175, p. 285-631, [Also available at: https://doi.org/10.3133/wsp2175]. Shearman, J.O., 1990, User's manual for WSPRO---A computer model for water-surface profile computations: U.S. Department of Transportation Publication No. FHWA--IP--89--027, Hydraulic Computer Programs HY--7, 177 p. [Also available at: https://water.usgs.gov/software/WSPRO/].
DOI: 10.5281/zenodo.6226684
title: GCAM-LAC v5.3-stash Output Data

description: This dataset includes output data from the GCAM LAC (v5.3-stash) model. The GCM and RCP selected for the study of Colombia Energy-Water-Land Systems are GFDL-ESM2M and RCP 2.6.
DOI: 10.5281/zenodo.6226683
title: GCAM-LAC v5.3-stash Output Data

description: This dataset includes output data from the GCAM LAC (v5.3-stash) model. The GCM and RCP selected for the study of Colombia Energy-Water-Land Systems are GFDL-ESM2M and RCP 2.6.
DOI: 10.6084/m9.figshare.19077821
title: methylenetetrahydrofolate reductase gene

description: We selected SNPs markers from the HapMap database using SNPBrowser™program (version 3.0) that obtained from Applied Biosystems Inc.The procedure has been published in a study(Shaw et al., 2009). The selection standard of tagging SNPs were based on the pairwise r<sup>2</sup>≥0.8 and SNPs with minor allele frequencies (MAFs) &lt;10% were excluded. These genetic loci (rs535107, rs2274976, rs1889292, rs4846052, rs4846048, rs7525338, rs3737964, rs1931226, rs4846051, rs1476413, rs2066470, rs1801133 and rs1801131) of the MTHFR gene were ultimately selected as candidate loci for this study. The MTHFR gene polymorphisms were tested by the matrix-assisted laser desorption and ionization time-of-fight mass spectrometry Mass Array system (Agena iPLEX assay, San Diego, CA, USA)
DOI: 10.6084/m9.figshare.19077821.v2
title: methylenetetrahydrofolate reductase gene

description: We selected SNPs markers from the HapMap database using SNPBrowser™program (version 3.0) that obtained from Applied Biosystems Inc.The procedure has been published in a study(Shaw et al., 2009). The selection standard of tagging SNPs were based on the pairwise r<sup>2</sup>≥0.8 and SNPs with minor allele frequencies (MAFs) &lt;10% were excluded. These genetic loci (rs535107, rs2274976, rs1889292, rs4846052, rs4846048, rs7525338, rs3737964, rs1931226, rs4846051, rs1476413, rs2066470, rs1801133 and rs1801131) of the MTHFR gene were ultimately selected as candidate loci for this study. The MTHFR gene polymorphisms were tested by the matrix-assisted laser desorption and ionization time-of-fight mass spectrometry Mass Array system (Agena iPLEX assay, San Diego, CA, USA)
DOI: 10.6084/m9.figshare.19077821.v1
title: methylenetetrahydrofolate reductase gene

description: We selected SNPs markers from the HapMap database using SNPBrowser™program (version 3.0) that obtained from Applied Biosystems Inc. The procedure has been published in a study. The selection standard of tagging SNPs were based on the pairwise r<sup>2</sup>≥0.8 and SNPs with minor allele frequencies (MAFs) &lt;10% were excluded. These genetic loci (rs535107, rs2274976, rs1889292, rs4846052, rs4846048, rs7525338, rs3737964, rs1931226, rs4846051, rs1476413, rs2066470, rs1801133 and rs1801131) of MTHFR gene were ultimately selected as candidate loci