cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21302184.v1
title: Table 6-Plagiarism Scoring Rubric

description: Table 6 resulted from "Developing a Comprehensive Plagiarism Scoring Rubric" published by Education and Information Technologies at https://doi.org/10.1007/s10639-022-11365-1.
DOI: 10.6084/m9.figshare.21154810
title: Species list of freshwater macroinvertebrates from Cuba

description: An updated species list of 590 species of tricladid flatworms (Tricladida, phylum Platyhelminthes), the insect orders Ephemeroptera (mayflies), Odonata (dragonflies and damselflies), Trichoptera (cadiflies) and freshwater Hemiptera, Coleoptera, Decapoda (crabs and shrimps, subphylum Crustacea) and Mollusca from Cuba created after a revision of the literature. Only binomial scientific names (genus + species) were considered, avoiding the use of subgenus and subespecies categories. This list was taken as taxonomic reference to search information on species occurrence records.
DOI: 10.6084/m9.figshare.21154810.v2
title: Species list of freshwater macroinvertebrates from Cuba

description: An updated species list of 590 species of tricladid flatworms (Tricladida, phylum Platyhelminthes), the insect orders Ephemeroptera (mayflies), Odonata (dragonflies and damselflies), Trichoptera (cadiflies) and freshwater Hemiptera, Coleoptera, Decapoda (crabs and shrimps, subphylum Crustacea) and Mollusca from Cuba created after a revision of the literature. Only binomial scientific names (genus + species) were considered, avoiding the use of subgenus and subespecies categories. This list was taken as taxonomic reference to search information on species occurrence records.
DOI: 10.6084/m9.figshare.21154810.v1
title: Species list of freshwater macroinvertebrates from Cuba

description: An updated species list of 589 species of tricladid flatworms (Tricladida, phylum Platyhelminthes), the insect orders Ephemeroptera (mayflies), Odonata (dragonflies and damselflies), Trichoptera (cadiflies) and freshwater Hemiptera, Coleoptera, Decapoda (crabs and shrimps, subphylum Crustacea) and Mollusca from Cuba created after a revision of the literature. Only binomial scientific names (genus + species) were considered, avoiding the use of subgenus and subespecies categories. This list was taken as taxonomic reference to search information on species occurrence records.
DOI: 10.6084/m9.figshare.21302052
title: Plagiarism Assessment Survey Data

description: The survey data resulted from "Developing a Comprehensive Plagiarism Scoring Rubric" published by Education and Information Technologies at https://doi.org/10.1007/s10639-022-11365-1.
DOI: 10.5517/ccdc.csd.cc29cp7m
title: CCDC 2126390: Experimental Crystal Structure Determination

description: Related Article: Qianyi Wang, Feng-Yang Bai, Yinling Wang, Fushuang Niu, Yifei Zhang, Qixi Mi, Ke Hu, Xiangcheng Pan|2022|J.Am.Chem.Soc.|144|19942|doi:10.1021/jacs.2c08173
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29cp8n
title: CCDC 2126391: Experimental Crystal Structure Determination

description: Related Article: Qianyi Wang, Feng-Yang Bai, Yinling Wang, Fushuang Niu, Yifei Zhang, Qixi Mi, Ke Hu, Xiangcheng Pan|2022|J.Am.Chem.Soc.|144|19942|doi:10.1021/jacs.2c08173
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29cp9p
title: CCDC 2126392: Experimental Crystal Structure Determination

description: Related Article: Qianyi Wang, Feng-Yang Bai, Yinling Wang, Fushuang Niu, Yifei Zhang, Qixi Mi, Ke Hu, Xiangcheng Pan|2022|J.Am.Chem.Soc.|144|19942|doi:10.1021/jacs.2c08173
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29cpbq
title: CCDC 2126393: Experimental Crystal Structure Determination

description: Related Article: Qianyi Wang, Feng-Yang Bai, Yinling Wang, Fushuang Niu, Yifei Zhang, Qixi Mi, Ke Hu, Xiangcheng Pan|2022|J.Am.Chem.Soc.|144|19942|doi:10.1021/jacs.2c08173
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29cpcr
title: CCDC 2126394: Experimental Crystal Structure Determination

description: Related Article: Qianyi Wang, Feng-Yang Bai, Yinling Wang, Fushuang Niu, Yifei Zhang, Qixi Mi, Ke Hu, Xiangcheng Pan|2022|J.Am.Chem.Soc.|144|19942|doi:10.1021/jacs.2c08173
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29z2w8
title: CCDC 2144080: Experimental Crystal Structure Determination

description: Related Article: Behnaz Farajpour, Abdolali Alizadeh|2022|J.Org.Chem.|87|13837|doi:10.1021/acs.joc.2c01542
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b4yk0
title: CCDC 2149712: Experimental Crystal Structure Determination

description: Related Article: K. Mohamed Yusuf Baig, Mukesh Kumar, Goutam Kumar Kole|2022|Materials Today: Proc.|68|13|doi:10.1016/j.matpr.2022.05.067
description: Related Article: Mukesh  Kumar|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bd3mh
title: CCDC 2156596: Experimental Crystal Structure Determination

description: Related Article: Fathima Pilathottathil, Sreelakshmi Unnikrishnan, Alagiri Kaliyamoorthy|2022|J.Org.Chem.|87|14980|doi:10.1021/acs.joc.2c02153
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bs79p
title: CCDC 2168242: Experimental Crystal Structure Determination

description: Related Article: Vincent S. Gutierrez, Axel Arnault, Véronique Ferreira, Albert Artigas, Denis Hagebaum-Reignier, Yannick Carissan, Yoann Coquerel, Marie-Aude Hiebel, Franck Suzenet|2022|J.Org.Chem.|87|13653|doi:10.1021/acs.joc.2c01308
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.21506648
title: Additional file 1 of Pediatric tuberculosis outcomes and factors associated with unfavorable treatment outcomes in Botswana, 2008–2019: a retrospective analysis

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.21506648.v1
title: Additional file 1 of Pediatric tuberculosis outcomes and factors associated with unfavorable treatment outcomes in Botswana, 2008–2019: a retrospective analysis

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.21506651
title: Additional file 1 of Lack of causal association between heart failure and osteoporosis: a Mendelian randomization study

description: Additional file 1: Table S1. STROBE-MR Checklist [20]. Table S2. Genome-wide significant SNPs associated with HF and their association with BMDs and fracture. Table S3. Evaluation of heterogeneity and directional pleiotropy using different methods.
DOI: 10.6084/m9.figshare.21506651.v1
title: Additional file 1 of Lack of causal association between heart failure and osteoporosis: a Mendelian randomization study

description: Additional file 1: Table S1. STROBE-MR Checklist [20]. Table S2. Genome-wide significant SNPs associated with HF and their association with BMDs and fracture. Table S3. Evaluation of heterogeneity and directional pleiotropy using different methods.
DOI: 10.6084/m9.figshare.21506655
title: Additional file 10 of Loss of Brca1 and Trp53 in adult mouse mammary ductal epithelium results in development of hormone receptor-positive or hormone receptor-negative tumors, depending on inactivation of Rb family proteins

description: Additional file 10. Table S3. Gene Set Enrichment Analysis (GSEA) results for all models. GSEA against a ranked set of genes (MSigDB v6.2 Human/Mouse/Macaque) was performed for each contrast using C2 curated gene sets. Only significantly enriched gene sets are listed (p adj &lt;0.05). Gene sets for which heat maps are shown in figures are highlighted in yellow.
DOI: 10.6084/m9.figshare.21506655.v1
title: Additional file 10 of Loss of Brca1 and Trp53 in adult mouse mammary ductal epithelium results in development of hormone receptor-positive or hormone receptor-negative tumors, depending on inactivation of Rb family proteins

description: Additional file 10. Table S3. Gene Set Enrichment Analysis (GSEA) results for all models. GSEA against a ranked set of genes (MSigDB v6.2 Human/Mouse/Macaque) was performed for each contrast using C2 curated gene sets. Only significantly enriched gene sets are listed (p adj &lt;0.05). Gene sets for which heat maps are shown in figures are highlighted in yellow.
DOI: 10.6084/m9.figshare.21506661
title: Additional file 12 of Loss of Brca1 and Trp53 in adult mouse mammary ductal epithelium results in development of hormone receptor-positive or hormone receptor-negative tumors, depending on inactivation of Rb family proteins

description: Additional file 12. Table S4. Additional Gene Set Enrichment Analysis (GSEA) results with KEGG and Biocarta for the comparison of the two luminal models. GSEA against a ranked set of genes (MSigDB v6.2 Human/Mouse/Macaque) was performed for B1/P/Rbfcompared to P/Rbf tumors using BIOCARTA and KEGG curated gene sets. Only significantly enriched gene sets are listed (padj &lt;0.05). Gene sets for which heat maps are shown in figures are highlighted in yellow
DOI: 10.6084/m9.figshare.21506661.v1
title: Additional file 12 of Loss of Brca1 and Trp53 in adult mouse mammary ductal epithelium results in development of hormone receptor-positive or hormone receptor-negative tumors, depending on inactivation of Rb family proteins

description: Additional file 12. Table S4. Additional Gene Set Enrichment Analysis (GSEA) results with KEGG and Biocarta for the comparison of the two luminal models. GSEA against a ranked set of genes (MSigDB v6.2 Human/Mouse/Macaque) was performed for B1/P/Rbfcompared to P/Rbf tumors using BIOCARTA and KEGG curated gene sets. Only significantly enriched gene sets are listed (padj &lt;0.05). Gene sets for which heat maps are shown in figures are highlighted in yellow
DOI: 10.6084/m9.figshare.21506670
title: Additional file 14 of Loss of Brca1 and Trp53 in adult mouse mammary ductal epithelium results in development of hormone receptor-positive or hormone receptor-negative tumors, depending on inactivation of Rb family proteins

description: Additional file 14. Table S5. List of significantly enriched canonical pathways obtained from GSEA for tumors of all three genotypes when compared to control mammary glands. Listed pathways were used in single-sample GSEA (ssGSEA) on all samples.
DOI: 10.6084/m9.figshare.21506670.v1
title: Additional file 14 of Loss of Brca1 and Trp53 in adult mouse mammary ductal epithelium results in development of hormone receptor-positive or hormone receptor-negative tumors, depending on inactivation of Rb family proteins

description: Additional file 14. Table S5. List of significantly enriched canonical pathways obtained from GSEA for tumors of all three genotypes when compared to control mammary glands. Listed pathways were used in single-sample GSEA (ssGSEA) on all samples.
DOI: 10.6084/m9.figshare.21506673
title: Additional file 15 of Loss of Brca1 and Trp53 in adult mouse mammary ductal epithelium results in development of hormone receptor-positive or hormone receptor-negative tumors, depending on inactivation of Rb family proteins

description: Additional file 15. Table S6. Differential expression of genes (DEG) analysis among tumor models. DEG was performed by applying Limma Voom package at p value threshold set to 0.05. Data are ordered by contrast and logFC values.
DOI: 10.6084/m9.figshare.21506673.v1
title: Additional file 15 of Loss of Brca1 and Trp53 in adult mouse mammary ductal epithelium results in development of hormone receptor-positive or hormone receptor-negative tumors, depending on inactivation of Rb family proteins

description: Additional file 15. Table S6. Differential expression of genes (DEG) analysis among tumor models. DEG was performed by applying Limma Voom package at p value threshold set to 0.05. Data are ordered by contrast and logFC values.
DOI: 10.6084/m9.figshare.21506682
title: Additional file 1 of Loss of Brca1 and Trp53 in adult mouse mammary ductal epithelium results in development of hormone receptor-positive or hormone receptor-negative tumors, depending on inactivation of Rb family proteins

description: Additional file 1. Table S1. List of antibodies and staining conditions that were used for immunohistochemistry.
DOI: 10.6084/m9.figshare.21506682.v1
title: Additional file 1 of Loss of Brca1 and Trp53 in adult mouse mammary ductal epithelium results in development of hormone receptor-positive or hormone receptor-negative tumors, depending on inactivation of Rb family proteins

description: Additional file 1. Table S1. List of antibodies and staining conditions that were used for immunohistochemistry.
DOI: 10.6084/m9.figshare.21506709
title: Additional file 9 of Loss of Brca1 and Trp53 in adult mouse mammary ductal epithelium results in development of hormone receptor-positive or hormone receptor-negative tumors, depending on inactivation of Rb family proteins

description: Additional file 9. Table S2. Differential expression of genes (DEG) analysis among tumor models. DEG was performed by applying Limma Voom package at p value threshold set to 0.001. Data are ordered by logFC values.
DOI: 10.6084/m9.figshare.21506709.v1
title: Additional file 9 of Loss of Brca1 and Trp53 in adult mouse mammary ductal epithelium results in development of hormone receptor-positive or hormone receptor-negative tumors, depending on inactivation of Rb family proteins

description: Additional file 9. Table S2. Differential expression of genes (DEG) analysis among tumor models. DEG was performed by applying Limma Voom package at p value threshold set to 0.001. Data are ordered by logFC values.
DOI: 10.6084/m9.figshare.21506753
title: Additional file 1 of Weakening behavior of the shallow megasplay fault in the Nankai subduction zone

description: Additional file 1: Table S1. Experimental table. All velocity step and constant velocity experiments are shown with friction dependence parameters as well as modeling parameters for the velocity step tests.
DOI: 10.6084/m9.figshare.21506753.v1
title: Additional file 1 of Weakening behavior of the shallow megasplay fault in the Nankai subduction zone

description: Additional file 1: Table S1. Experimental table. All velocity step and constant velocity experiments are shown with friction dependence parameters as well as modeling parameters for the velocity step tests.
DOI: 10.6084/m9.figshare.21506721.v1
title: Additional file 11 of Single cell profiling of CD45+ spinal cord cells reveals microglial and B cell heterogeneity and crosstalk following spinal cord injury

description: Additional file 11. List of all pathways identified using Enrichr for microglia and B cells at individual timepoints as identified in Fig. 6C, D.
DOI: 10.6084/m9.figshare.21506721
title: Additional file 11 of Single cell profiling of CD45+ spinal cord cells reveals microglial and B cell heterogeneity and crosstalk following spinal cord injury

description: Additional file 11. List of all pathways identified using Enrichr for microglia and B cells at individual timepoints as identified in Fig. 6C, D.
DOI: 10.6084/m9.figshare.21506733
title: Additional file 14 of Single cell profiling of CD45+ spinal cord cells reveals microglial and B cell heterogeneity and crosstalk following spinal cord injury

description: Additional file 14. Lists of receptor-ligand pairs identified in the Venn diagrams of Fig. 7D.
DOI: 10.6084/m9.figshare.21506733.v1
title: Additional file 14 of Single cell profiling of CD45+ spinal cord cells reveals microglial and B cell heterogeneity and crosstalk following spinal cord injury

description: Additional file 14. Lists of receptor-ligand pairs identified in the Venn diagrams of Fig. 7D.
DOI: 10.6084/m9.figshare.21506736
title: Additional file 15 of Single cell profiling of CD45+ spinal cord cells reveals microglial and B cell heterogeneity and crosstalk following spinal cord injury

description: Additional file 15. GO Biological pathway enrichments identified in Additional file 10.
DOI: 10.6084/m9.figshare.21506736.v1
title: Additional file 15 of Single cell profiling of CD45+ spinal cord cells reveals microglial and B cell heterogeneity and crosstalk following spinal cord injury

description: Additional file 15. GO Biological pathway enrichments identified in Additional file 10.
DOI: 10.6084/m9.figshare.21506754
title: Additional file 5 of Single cell profiling of CD45+ spinal cord cells reveals microglial and B cell heterogeneity and crosstalk following spinal cord injury

description: Additional file 5. Geneset enrichments for brain and spinal cord microglia. Tables of GO Biological Process enrichments supporting Fig. 4.
DOI: 10.6084/m9.figshare.21506754.v1
title: Additional file 5 of Single cell profiling of CD45+ spinal cord cells reveals microglial and B cell heterogeneity and crosstalk following spinal cord injury

description: Additional file 5. Geneset enrichments for brain and spinal cord microglia. Tables of GO Biological Process enrichments supporting Fig. 4.
DOI: 10.6084/m9.figshare.21506757
title: Additional file 6 of Single cell profiling of CD45+ spinal cord cells reveals microglial and B cell heterogeneity and crosstalk following spinal cord injury

description: Additional file 6. List of DE genes for subacute and chronic microglia following SCI supporting Fig. 4.
DOI: 10.6084/m9.figshare.21506757.v1
title: Additional file 6 of Single cell profiling of CD45+ spinal cord cells reveals microglial and B cell heterogeneity and crosstalk following spinal cord injury

description: Additional file 6. List of DE genes for subacute and chronic microglia following SCI supporting Fig. 4.
DOI: 10.6084/m9.figshare.21506766
title: Additional file 9 of Single cell profiling of CD45+ spinal cord cells reveals microglial and B cell heterogeneity and crosstalk following spinal cord injury

description: Additional file 9. List of GO Biological Process enrichments from the total dataset at day 0, 7 dpi, and 60 dpi. Full list of enrichments supporting Fig. 6A, B.
DOI: 10.6084/m9.figshare.21506766.v1
title: Additional file 9 of Single cell profiling of CD45+ spinal cord cells reveals microglial and B cell heterogeneity and crosstalk following spinal cord injury

description: Additional file 9. List of GO Biological Process enrichments from the total dataset at day 0, 7 dpi, and 60 dpi. Full list of enrichments supporting Fig. 6A, B.
DOI: 10.6084/m9.figshare.21506835
title: Additional file 2 of Identification, expression, and purification of DNA cytosine 5-methyltransferases with short recognition sequences

description: Additional file 2. Table S1. Summary of the analysis of candicate DNMTs.
DOI: 10.6084/m9.figshare.21506835.v1
title: Additional file 2 of Identification, expression, and purification of DNA cytosine 5-methyltransferases with short recognition sequences

description: Additional file 2. Table S1. Summary of the analysis of candicate DNMTs.
DOI: 10.6084/m9.figshare.21506901
title: Additional file 2 of Construction of a novel cuproptosis-related gene signature for predicting prognosis and estimating tumor immune microenvironment status in papillary thyroid carcinoma

description: Additional file 2: Table S2. Details of 21 P-DECRGs generated from the results of Wilcoxon rank sum test and univariable Cox analysis in this study.
DOI: 10.6084/m9.figshare.21506901.v1
title: Additional file 2 of Construction of a novel cuproptosis-related gene signature for predicting prognosis and estimating tumor immune microenvironment status in papillary thyroid carcinoma

description: Additional file 2: Table S2. Details of 21 P-DECRGs generated from the results of Wilcoxon rank sum test and univariable Cox analysis in this study.
DOI: 10.6084/m9.figshare.21506910
title: Additional file 2 of Effect of up to 30-days of storage at different temperatures on detection of feline kidney injury molecule-1 in urine

description: Additional file 2.
DOI: 10.6084/m9.figshare.21506952
title: Functional and terrain data

description: These tables contain the measured functional attributes, environmental drivers, the calculated terrain and community attributes
DOI: 10.6084/m9.figshare.21506952.v1
title: Functional and terrain data

description: These tables contain the measured functional attributes, environmental drivers, the calculated terrain and community attributes
DOI: 10.5517/ccdc.csd.cc2c26th
title: CCDC 2176876: Experimental Crystal Structure Determination

description: Related Article: Mallepalli Shankar, Adula Kalyani, Mandala Anitha, Alla Siva Reddy, K. C. Kumara Swamy|2022|J.Org.Chem.|87|13683|doi:10.1021/acs.joc.2c01337
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.