cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17133052.v1
title: Additional file 11 of QTL and candidate gene identification of the node of the first fruiting branch (NFFB) by QTL-seq in upland cotton (Gossypium hirsutum L.)

description: Additional file 11: Table S6. Specific primers used for virus-induced gene silencing assay.
DOI: 10.6084/m9.figshare.17133067
title: Additional file 5 of QTL and candidate gene identification of the node of the first fruiting branch (NFFB) by QTL-seq in upland cotton (Gossypium hirsutum L.)

description: Additional file 5: Table S3. Summary of the annotation information of 142 genes.
DOI: 10.6084/m9.figshare.17133067.v1
title: Additional file 5 of QTL and candidate gene identification of the node of the first fruiting branch (NFFB) by QTL-seq in upland cotton (Gossypium hirsutum L.)

description: Additional file 5: Table S3. Summary of the annotation information of 142 genes.
DOI: 10.6084/m9.figshare.14511630
title: Human-climate coupled changes in vegetation community complexity of China since the 1980s

description:  Vegetation community complexity is a critical factor influencing terrestrial ecosystem stability. China, the country leading the world in vegetation greening resulting from human activities, has experienced dramatic changes in vegetation community composition during the past 30 years. However, how China’s vegetation community complexity varies spatially and temporally remains unclear. Here, we provided the datasets and codes used to investigate this issue, as published in "Human-climate coupled changes in vegetation community complexity of China since 1980s" by Su et al.
DOI: 10.6084/m9.figshare.17133070
title: Additional file 6 of QTL and candidate gene identification of the node of the first fruiting branch (NFFB) by QTL-seq in upland cotton (Gossypium hirsutum L.)

description: Additional file 6: Table S4. The FPKM values of 12 candidate genes in 12 cotton tissues.
DOI: 10.6084/m9.figshare.17133070.v1
title: Additional file 6 of QTL and candidate gene identification of the node of the first fruiting branch (NFFB) by QTL-seq in upland cotton (Gossypium hirsutum L.)

description: Additional file 6: Table S4. The FPKM values of 12 candidate genes in 12 cotton tissues.
DOI: 10.17028/rd.lboro.14511639
title: Supplementary information files for New quinoxaline-based blue emitters: molecular structures, aggregation-induced enhanced emission characteristics and OLED application

description: Supplementary files for article New quinoxaline-based blue emitters: molecular structures, aggregation-induced enhanced emission characteristics and OLED application. Three new, deep blue light emitters, containing quinoxaline with differing substitution positions (1‐ or 2‐ position) pyrene (biphenyl) moieties, were synthesized by a Pd‐catalysed coupling reaction in high yield, and were fully characterized by <sup>1</sup>H/<sup>13</sup>C NMR spectroscopy, single crystal X‐ray diffraction, and high‐resolution mass spectrometry (HRMS). The designed molecules exhibited good thermal stability (Tg &gt; 452 oC). Single crystal X‐ray diffraction indicated that the compounds containing pyrene units exhibiting π‐π stacking, and thus this family of compounds exhibited intramolecular charge transfer (ICT) and non‐typical and aggregation‐induced enhanced emission (AIEE) characteristics possessing blue emission both in solution and in the aggregation (solid) state. Furthermore, a selected deep blue emitter was utilized as the emitting layer for the fabricating of doped OLED devices, which afforded a deep blue electroluminescence (EL) peak at 428 nm with a narrow FWHM of 57 nm, and the Commission Internationale de L'Eclairage (CIE) chromaticity coordinates of (0.15, 0.06).
DOI: 10.17028/rd.lboro.14511639.v1
title: Supplementary information files for New quinoxaline-based blue emitters: molecular structures, aggregation-induced enhanced emission characteristics and OLED application

description: Supplementary files for article New quinoxaline-based blue emitters: molecular structures, aggregation-induced enhanced emission characteristics and OLED application. Three new, deep blue light emitters, containing quinoxaline with differing substitution positions (1‐ or 2‐ position) pyrene (biphenyl) moieties, were synthesized by a Pd‐catalysed coupling reaction in high yield, and were fully characterized by <sup>1</sup>H/<sup>13</sup>C NMR spectroscopy, single crystal X‐ray diffraction, and high‐resolution mass spectrometry (HRMS). The designed molecules exhibited good thermal stability (Tg &gt; 452 oC). Single crystal X‐ray diffraction indicated that the compounds containing pyrene units exhibiting π‐π stacking, and thus this family of compounds exhibited intramolecular charge transfer (ICT) and non‐typical and aggregation‐induced enhanced emission (AIEE) characteristics possessing blue emission both in solution and in the aggregation (solid) state. Furthermore, a selected deep blue emitter was utilized as the emitting layer for the fabricating of doped OLED devices, which afforded a deep blue electroluminescence (EL) peak at 428 nm with a narrow FWHM of 57 nm, and the Commission Internationale de L'Eclairage (CIE) chromaticity coordinates of (0.15, 0.06).
DOI: 10.25345/c5542jk7t
title: MassIVE MSV000094118 - Chevrette et al. 2022 Microbiome composition modulates secondary metabolism in a multispecies bacterial community
title: Dataset from Chevrette MG, Thomas CS, Hurley A, Rosario-Melendez N, Sankaran K, Tu Y, Hall A, Magesh S, Handelsman J. Microbiome composition modulates secondary metabolism in a multispecies bacterial community. Proc Natl Acad Sci U S A. 2022 Oct 18;119(42):e2212930119. doi: 10.1073/pnas.2212930119. Epub 2022 Oct 10. PMID: 36215464; PMCID: PMC9586298. Cultures of a simplified model of the rhizosphere, composed of Bacillus cereus (Bc), Flavobacterium johnsoniae (Fj), and Pseudomonas koreensis (Pk). In addition, a Pseudomonas koreensis mutant with the koreenceine BGC deletion (D) was used for cultures. Data were collected using monocultures, as well as two- and three-member cocultures.
DOI: 10.6084/m9.figshare.17133087
title: Additional file 1 of Th17 cell differentiation induced by cytopathogenic biotype BVDV-2 in bovine PBLCs

description: Additional file 1: Table S1. The significantly differentially expressed mRNAs. Table S2. The volcano plot showed the distributions of mRNAs.
DOI: 10.6084/m9.figshare.17133087.v1
title: Additional file 1 of Th17 cell differentiation induced by cytopathogenic biotype BVDV-2 in bovine PBLCs

description: Additional file 1: Table S1. The significantly differentially expressed mRNAs. Table S2. The volcano plot showed the distributions of mRNAs.
DOI: 10.6084/m9.figshare.11890212
title: Data for [Paleomagnetism and U-Pb Geochronology of Early Cretaceous Volcanic Rocks from the Qiangtang Block, Tibetan Plateau: Implications for the Qiangtang-Lhasa Collision]

description: Data used in the manuscript [Paleomagnetism and U-Pb Geochronology of Early Cretaceous Volcanic Rocks from the Qiangtang Block, Tibetan Plateau: Implications for the Qiangtang-Lhasa Collision] published in Tectonophysics.doi: 10.1016/j.tecto.2020.228500 
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DOI: 10.6084/m9.figshare.17133090
title: Additional file 2 of Th17 cell differentiation induced by cytopathogenic biotype BVDV-2 in bovine PBLCs

description: Additional file 2: Table S3. Go enrichment analysis of differentially expressed mRNAs.
DOI: 10.6084/m9.figshare.17133096
title: Additional file 4 of Th17 cell differentiation induced by cytopathogenic biotype BVDV-2 in bovine PBLCs

description: Additional file 4: Table S5. KEGG interaction network analysis of differentially expressed mRNAs.
DOI: 10.6084/m9.figshare.17133090.v1
title: Additional file 2 of Th17 cell differentiation induced by cytopathogenic biotype BVDV-2 in bovine PBLCs

description: Additional file 2: Table S3. Go enrichment analysis of differentially expressed mRNAs.
DOI: 10.6084/m9.figshare.17133096.v1
title: Additional file 4 of Th17 cell differentiation induced by cytopathogenic biotype BVDV-2 in bovine PBLCs

description: Additional file 4: Table S5. KEGG interaction network analysis of differentially expressed mRNAs.
DOI: 10.6084/m9.figshare.12414506
title: Additional file 3 of Differential proteomic analysis of fetal and geriatric lumbar nucleus pulposus: immunoinflammation and age-related intervertebral disc degeneration

description: Additional file 3. Information identified by MS.
DOI: 10.6084/m9.figshare.17133093
title: Additional file 3 of Th17 cell differentiation induced by cytopathogenic biotype BVDV-2 in bovine PBLCs

description: Additional file 3: Table S4. KEGG pathway analysis of differentially expressed mRNAs.
DOI: 10.6084/m9.figshare.12414506.v1
title: Additional file 3 of Differential proteomic analysis of fetal and geriatric lumbar nucleus pulposus: immunoinflammation and age-related intervertebral disc degeneration

description: Additional file 3. Information identified by MS.
DOI: 10.6084/m9.figshare.17133093.v1
title: Additional file 3 of Th17 cell differentiation induced by cytopathogenic biotype BVDV-2 in bovine PBLCs

description: Additional file 3: Table S4. KEGG pathway analysis of differentially expressed mRNAs.
DOI: 10.6084/m9.figshare.17133099
title: Additional file 5 of Th17 cell differentiation induced by cytopathogenic biotype BVDV-2 in bovine PBLCs

description: Additional file 5: Table S6. Protein-protein interaction network analysis of differentially expressed mRNAs.
DOI: 10.6084/m9.figshare.17133099.v1
title: Additional file 5 of Th17 cell differentiation induced by cytopathogenic biotype BVDV-2 in bovine PBLCs

description: Additional file 5: Table S6. Protein-protein interaction network analysis of differentially expressed mRNAs.
DOI: 10.6084/m9.figshare.19754553
title: Mass spectrometry-based metabolic profiling for identification of biomarkers in serum related to the change of laying ducks in different physiological periods

description: Eggs are a major animal protein source for humans. Egg formation is a complex process involved in coordinating various tissues and organs, while blood is necessary for gonad differentiation and egg formation. In this study, non-targeted metabolomics technology was employed to determine the serum metabolites at the time point of 70 days (before laying period, T0), 130 days (pre-laying period, T1), 300 days (peak laying period, T2), and 340 days (post laying period, T3) in female ducks, to provide comprehensive metabolic profiling in reflecting the overall temporal changes. The results showed significant differences in the metabolites of different comparison groups (T0 vs. T1, T2 vs. T3, and T0 & T1 vs. T2& T3), supporting the main physiological responses in ducks are differential among laying periods. L-Aspartic Acid, Biotin, and Thyroxine can be considered the potential biomarkers related to sexual maturity. L-Lysine, Lumichrome, Thiamine, Riboflavin, and Pyridoxine may be biomarkers related to egg formation. Sorbitol, Isorhamnetin, Naringenin, and Hydroxykynurenine were the biomarkers associated with the decline of egg production. In addition, the Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathway analysis showed that sexual maturity was mainly involved in the biosynthesis of secondary plant metabolites, Tricarboxylic Acid Cycle, Mineral absorption, pentose phosphate pathway, and Oxocarboxylic acid metabolism. Egg formation disturbed amino acid metabolism, vitamin metabolism, and carbohydrate metabolism. The neuroactive ligand-receptor interaction pathway may affect egg production. These findings can detect the different physiological statuses in female ducks and provide a theoretical basis for increasing egg production, and ensuring sustainable farming.HighlightsThe main physiological responses in ducks are differential among laying periods.3, 6, and 4 biomarkers related to sexual maturity, the formation of the egg, and the decline of egg production, respectively.Sexual maturity was mainly involved in the biosynthesis of secondary plant metabolites, Tricarboxylic Acid Cycle, Mineral absorption, pentose phosphate pathway, and Oxocarboxylic acid metabolism, and egg formation disturbed amino acid metabolism, vitamin metabolism, and carbohydrate metabolism. while the neuroactive ligand-receptor interaction pathway may affect egg production. The main physiological responses in ducks are differential among laying periods. 3, 6, and 4 biomarkers related to sexual maturity, the formation of the egg, and the decline of egg production, respectively. Sexual maturity was mainly involved in the biosynthesis of secondary plant metabolites, Tricarboxylic Acid Cycle, Mineral absorption, pentose phosphate pathway, and Oxocarboxylic acid metabolism, and egg formation disturbed amino acid metabolism, vitamin metabolism, and carbohydrate metabolism. while the neuroactive ligand-receptor interaction pathway may affect egg production.
DOI: 10.6084/m9.figshare.19754553.v1
title: Mass spectrometry-based metabolic profiling for identification of biomarkers in serum related to the change of laying ducks in different physiological periods

description: Eggs are a major animal protein source for humans. Egg formation is a complex process involved in coordinating various tissues and organs, while blood is necessary for gonad differentiation and egg formation. In this study, non-targeted metabolomics technology was employed to determine the serum metabolites at the time point of 70 days (before laying period, T0), 130 days (pre-laying period, T1), 300 days (peak laying period, T2), and 340 days (post laying period, T3) in female ducks, to provide comprehensive metabolic profiling in reflecting the overall temporal changes. The results showed significant differences in the metabolites of different comparison groups (T0 vs. T1, T2 vs. T3, and T0 & T1 vs. T2& T3), supporting the main physiological responses in ducks are differential among laying periods. L-Aspartic Acid, Biotin, and Thyroxine can be considered the potential biomarkers related to sexual maturity. L-Lysine, Lumichrome, Thiamine, Riboflavin, and Pyridoxine may be biomarkers related to egg formation. Sorbitol, Isorhamnetin, Naringenin, and Hydroxykynurenine were the biomarkers associated with the decline of egg production. In addition, the Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathway analysis showed that sexual maturity was mainly involved in the biosynthesis of secondary plant metabolites, Tricarboxylic Acid Cycle, Mineral absorption, pentose phosphate pathway, and Oxocarboxylic acid metabolism. Egg formation disturbed amino acid metabolism, vitamin metabolism, and carbohydrate metabolism. The neuroactive ligand-receptor interaction pathway may affect egg production. These findings can detect the different physiological statuses in female ducks and provide a theoretical basis for increasing egg production, and ensuring sustainable farming.HighlightsThe main physiological responses in ducks are differential among laying periods.3, 6, and 4 biomarkers related to sexual maturity, the formation of the egg, and the decline of egg production, respectively.Sexual maturity was mainly involved in the biosynthesis of secondary plant metabolites, Tricarboxylic Acid Cycle, Mineral absorption, pentose phosphate pathway, and Oxocarboxylic acid metabolism, and egg formation disturbed amino acid metabolism, vitamin metabolism, and carbohydrate metabolism. while the neuroactive ligand-receptor interaction pathway may affect egg production. The main physiological responses in ducks are differential among laying periods. 3, 6, and 4 biomarkers related to sexual maturity, the formation of the egg, and the decline of egg production, respectively. Sexual maturity was mainly involved in the biosynthesis of secondary plant metabolites, Tricarboxylic Acid Cycle, Mineral absorption, pentose phosphate pathway, and Oxocarboxylic acid metabolism, and egg formation disturbed amino acid metabolism, vitamin metabolism, and carbohydrate metabolism. while the neuroactive ligand-receptor interaction pathway may affect egg production.
DOI: 10.57967/hf/1794
title: MORA
DOI: 10.6084/m9.figshare.5598793
title: A Starting Point for Navigating the World of Daily Fantasy Basketball

description: Fantasy sports, particularly the daily variety in which new lineups are selected each day, are a rapidly growing industry. The two largest companies in the daily fantasy business, DraftKings and Fanduel, have been valued as high as $2 billion. This research focuses on the development of a complete system for daily fantasy basketball, including both the prediction of player performance and the construction of a team. First, a Bayesian random effects model is used to predict an aggregate measure of daily NBA player performance. The predictions are then used to construct teams under the constraints of the game, typically related to a fictional salary cap and player positions. Permutation based and <i>K</i>-nearest neighbors approaches are compared in terms of the identification of “successful” teams—those who would be competitive more often than not based on historical data. We demonstrate the efficacy of our system by comparing our predictions to those from a well-known analytics website, and by simulating daily competitions over the course of the 2015–2016 season. Our results show an expected profit of approximately $9,000 on an initial $500 investment using the <i>K</i>-nearest neighbors approach, a 36% increase relative to using the permutation-based approach alone. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.11366030
title: Overview of the biodiversity and geographic distribution of aloricate oligotrich ciliates (Protozoa, Ciliophora, Spirotrichea) in coastal waters of southern China

description: Aloricate oligotrich ciliates are important components of marine microplankton. This paper summarizes the results of several biodiversity and faunal studies on this group in typical coastal habitats of southern China that were carried out from 2006 to 2016. The main findings are as follows: (1) a total of 39 species belonging to 17 genera, seven families and four orders of aloricate oligotrich (<i>s. l.</i>) ciliates were identified from coastal waters of Zhanjiang, Guangzhou, Shenzhen, Huizhou, and Hong Kong; among these 16 species, four genera, one family and one order were new to science; (2) the order Oligotrichida represents the most abundant taxon with highest species richness and its members are widely distributed in all coastal habitats; the family Strombidiidae and the genus <i>Strombidium</i> comprise the highest proportion of all oligotrichs at family and genus levels, respectively; (3) based on the results of our taxonomic investigations, the biodiversity of oligotrichs in five typical habitats are compared; mangrove wetland possessing the highest species richness of oligotrich ciliates represents a biodiversity hotspot habitat in the southern coast of China; (4) morphologies of 10 poorly known species, namely <i>Pelagohalteria cirrifera</i>, <i>Strombidium conicum</i>, <i>Spirostrombidium schizostomum</i>, <i>Parallelostrombidium paralatum</i>, <i>Omegastrombidium elegans</i>, <i>Varistrombidium kielum</i>, <i>Spirotontonia turbinata</i>, <i>Pelagostrobilidium simile</i>, <i>Strombidinopsis batos</i>, and <i>Strombidinopsis cheshiri</i> are redescribed based on living and protargol-stained specimens, and some new characters are analysed. Improved diagnoses of <i>Strombidium conicum</i> and <i>Strombidinopsis batos</i> are supplied.
DOI: 10.6084/m9.figshare.11366030.v1
title: Overview of the biodiversity and geographic distribution of aloricate oligotrich ciliates (Protozoa, Ciliophora, Spirotrichea) in coastal waters of southern China

description: Aloricate oligotrich ciliates are important components of marine microplankton. This paper summarizes the results of several biodiversity and faunal studies on this group in typical coastal habitats of southern China that were carried out from 2006 to 2016. The main findings are as follows: (1) a total of 39 species belonging to 17 genera, seven families and four orders of aloricate oligotrich (<i>s. l.</i>) ciliates were identified from coastal waters of Zhanjiang, Guangzhou, Shenzhen, Huizhou, and Hong Kong; among these 16 species, four genera, one family and one order were new to science; (2) the order Oligotrichida represents the most abundant taxon with highest species richness and its members are widely distributed in all coastal habitats; the family Strombidiidae and the genus <i>Strombidium</i> comprise the highest proportion of all oligotrichs at family and genus levels, respectively; (3) based on the results of our taxonomic investigations, the biodiversity of oligotrichs in five typical habitats are compared; mangrove wetland possessing the highest species richness of oligotrich ciliates represents a biodiversity hotspot habitat in the southern coast of China; (4) morphologies of 10 poorly known species, namely <i>Pelagohalteria cirrifera</i>, <i>Strombidium conicum</i>, <i>Spirostrombidium schizostomum</i>, <i>Parallelostrombidium paralatum</i>, <i>Omegastrombidium elegans</i>, <i>Varistrombidium kielum</i>, <i>Spirotontonia turbinata</i>, <i>Pelagostrobilidium simile</i>, <i>Strombidinopsis batos</i>, and <i>Strombidinopsis cheshiri</i> are redescribed based on living and protargol-stained specimens, and some new characters are analysed. Improved diagnoses of <i>Strombidium conicum</i> and <i>Strombidinopsis batos</i> are supplied.
DOI: 10.6084/m9.figshare.23621362.v1
title: Additional file 11 of Optimized screening of DNA methylation sites combined with gene expression analysis to identify diagnostic markers of colorectal cancer

description: Supplementary Material 11
DOI: 10.6084/m9.figshare.23621362
title: Additional file 11 of Optimized screening of DNA methylation sites combined with gene expression analysis to identify diagnostic markers of colorectal cancer

description: Supplementary Material 11
DOI: 10.6084/m9.figshare.7171772
title: Identification and expression analysis of <i>MinD</i> gene involved in plastid division in cassava

description: Cassava is a tropical crop known for its starchy root and excellent properties. Considering that starch biosynthesis in the amyloplast is affected by its division, it appears conceivable that the regulation of plastid division plays an important role in starch accumulation. As a member of the Min system genes, <i>MinD</i> participated in the spatial regulation of the position of the plastid division site.In our studies, sequence analysis and phylogenetic analysis showed that MeMinD has been highly conserved during the evolutionary process. Subcellular localisation indicated that MeMinD carries a chloroplast transit peptide and was localised in the chloroplast. Overexpression of <i>MeMinD</i> resulted in division site misplacement and filamentous formation in <i>E. coli</i>, indicating that MeMinD protein was functional across species. <i>MeMinD</i> exhibited different spatial and temporal expression patterns which was highly expressed in the source compared to that in the sink organ. Plastid-localised protein, MeMinD, was highly conserved, which is functional across species, and was highly expressed in the source organ compared to that in the sink organ.