cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.mv5dh
title: Data from: Ecology of information: social transmission dynamics within groups of non-social insects

description: While many studies focus on how animals use public information, the
 dynamics of information spread and maintenance within groups, i.e. the
 ‘ecology of information’, have received little attention. Here we use
 fruitflies trained to lay eggs on specific substrates to implement
 information into groups containing both trained and untrained individuals.
 We quantify inter-individual interactions and then measure the spread of
 oviposition preference with behavioural tests. Untrained individuals
 increase their interactive approaches in the presence of trained
 individuals, and the oviposition preference transmission is directly
 proportional to how much trained and untrained individuals interact.
 Unexpectedly, the preference of trained individuals to their trained
 oviposition substrate decreases after interactions with untrained
 individuals, leading to an overall informational loss. This shows that
 social learning alone is not enough to support informational stability.
description: proc
 Bcomplete
DOI: 10.25625/a2z8t8/8me35r
title: footprint_2023_Dornburg_AF_90%.tab

description: :unav
DOI: 10.25625/a2z8t8/kuwhan
title: footprint_2021_Vechta_AF_90%.tab

description: :unav
DOI: 10.25625/a2z8t8/nkearm
title: footprint_Vechta_MC_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/1xud77
title: footprint_2021_Wendhausen_AF_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/pi5im0
title: footprint_2023_Forst_MC_90%.tab

description: :unav
DOI: 10.5061/dryad.64b5p
title: Data from: Application of ITS2 metabarcoding to determine the provenance of pollen collected by honey bees in an agroecosystem

description: Premise of the study: Melissopalynology, the identification of
 bee-collected pollen, provides insight into the flowers exploited by
 foraging bees. Information provided by melissopalynology could guide
 floral enrichment efforts aimed at supporting pollinators, but it has
 rarely been used because traditional methods of pollen identification are
 laborious and require expert knowledge. We approach melissopalynology in a
 novel way, employing a molecular method to study the pollen foraging of
 honey bees (Apis mellifera) in a landscape dominated by field crops, and
 compare these results to those obtained by microscopic melissopalynology.
 Methods: Pollen was collected from honey bee colonies in Madison County,
 Ohio, USA, during a two-week period in mid-spring and identified using
 microscopic methods and ITS2 metabarcoding. Results: Metabarcoding
 identified 19 plant families and exhibited sensitivity for identifying the
 taxa present in large and diverse pollen samples relative to microscopy,
 which identified eight families. The bulk of pollen collected by honey
 bees was from trees (Sapindaceae, Oleaceae, and Rosaceae), although
 dandelion (Taraxacum officinale) and mustard (Brassicaceae) pollen were
 also abundant. Discussion: For quantitative analysis of pollen, using both
 metabarcoding and microscopic identification is superior to either
 individual method. For qualitative analysis, ITS2 metabarcoding is
 superior, providing heightened sensitivity and genus-level resolution.
description: Genbank-derived ITS2
 reference libraryThis is a reference
 library of 2628 plant ribosomal sequences downloaded from Genbank on March
 11, 2014. This library represents approximately half of the 4918 plant
 species potentially present in Ohio and surrounding states (USDA PLANTS
 database; http://plants.usda.gov/). This file is in FASTA
 format.Richardson_etal_ITS2_reference_library.txt
DOI: 10.25625/a2z8t8/9aztqs
title: footprint_Mariensee_MC_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/it5c17
title: Wendhausen_AF_fluxes_30min.tab

description: :unav
DOI: 10.25625/a2z8t8/z2cjgo
title: footprint_2023_Wendhausen_AF_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/bbrqu0
title: footprint_Mariensee_MC_90%.tab

description: :unav
DOI: 10.25625/a2z8t8/mqblza
title: footprint_2021_Mariensee_MC_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/0sbjbz
title: footprint_2021_Dornburg_AF_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/wtwnlo
title: footprint_2024_Wendhausen_AF_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/ugtu6q
title: footprint_2019_Vechta_MC_80%.tab

description: :unav
DOI: 10.5061/dryad.3n5c9
title: Data from: Testing classical species properties with contemporary data: how 'bad species' in the brassy ringlets (Erebia tyndarus complex, Lepidoptera) turned good

description: All species concepts are rooted in reproductive, and ultimately
 genealogical, relations. Genetic data are thus the most important source
 of information for species delimitation. Current ease of access to genomic
 data and recent computational advances are blooming a plethora of
 coalescent-based species delimitation methods. Despite their utility as
 objective approaches to identify species boundaries, coalescent-based
 methods i) rely on simplified demographic models that may fail to capture
 some attributes of biological species, ii) do not make explicit use of the
 geographic information contained in the data, and iii) are often
 computationally intensive. In this paper we present a case of species
 delimitation in the Erebia tyndarus species complex, a taxon regarded as a
 classic example of problematic taxonomic resolution. Our approach to
 species delimitation used genomic data to test predictions rooted in the
 biological species concept and in the criterion of coexistence in
 sympatry. We 1) obtained RAD sequencing data from a carefully designed
 sample, 2) applied two genotype clustering algorithms to identify genetic
 clusters and 3) performed within-clusters and between-clusters analyses of
 isolation by distance (IBD) as a test for intrinsic reproductive barriers.
 Comparison of our results with those from a Bayes Factor Delimitation
 (BFD*) coalescent-based analysis, showed that coalescent-based approaches
 may lead to overconfident splitting of allopatric populations, and
 indicated that incorrect species delimitation is likely to be inferred
 when an incomplete geographic sample is analysed. While we acknowledge the
 theoretical justification and practical usefulness of coalescent-based
 species delimitation methods, our results stress that, even in the
 phylogenomic era, the toolkit for species delimitation should not dismiss
 more traditional, biologically grounded, approaches coupling genomic data
 with geographic information.
description: Appendix
 1Metadata for all samples
 employed in the study.Appendix
 2Detailed methods for
 morphometric analyses.Fig S1 - Shared loci
 treeNeighbor-joining tree
 based on the proportion of shared RAD loci between
 individualsFig S2 - clustering vs
 lociClustering of
 individuals as a function of the number of RAD loci
 analysed.stacks
 catalogCatalog of putative RAD
 loci output from stacks pipeline.stacks.catalogGenotypes genpop formatFiltered RAD loci in genpop format, input for PCAs and computation of pairwise genetic distances.genpop.popstructure input fileinput file for Structure.structure.inputstructure mainparamsContains parameters for Structure analysisstructure.mainparamsLDA dataContains the first 4 PCs of wing margin shape, wing areas, eyespot areas, latitude and elevation of samples employed in the LDA.LDA_data.txtwing marginsContains coordinates (in pixels) of the semi-landmarks describing the shape of the left forewing margin in tps format.wing_margins.tps
DOI: 10.25625/a2z8t8/q00aji
title: footprint_2020_Forst_AF_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/wpybvi
title: footprint_2021_Vechta_MC_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/awfaqh
title: footprint_2019_Wendhausen_MC_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/o49eoz
title: footprint_Vechta_AF_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/a5p4tp
title: footprint_2021_Forst_MC_70%.tab

description: :unav
DOI: 10.5061/dryad.vv7c8
title: Data from: Leaf P increase outpaces leaf N in an Inner Mongolia grassland over 27 years

description: The dynamics of leaf nitrogen (N) and phosphorus (P) have been intensively
 explored in short-term experiments, but rarely at longer timescales. Here,
 we investigated leaf N : P stoichiometry over a 27-year interval in an
 Inner Mongolia grassland by comparing leaf N : P concentration of 2006
 with that of 1979. Across 80 species, both leaf N and P increased, but the
 increase in leaf N lagged behind that of leaf P, leading to a significant
 decrease in the N : P ratio. These changes in leaf N : P stoichiometry
 varied among functional groups. For leaf N, grasses increased, woody
 species tended to increase, whereas forbs showed no change. Unlike leaf N,
 leaf P of grasses and forbs increased, whereas woody species showed no
 change. Such changes may reflect N deposition and P release induced by
 soil acidification over the past decades. The interannual effect of
 precipitation may somewhat have reduced the soil available N, leading to
 the more modest increase of leaf N than of leaf P. Thus, leaf N : P
 stoichiometry significantly responded to long-term environmental changes
 in this temperate steppe, but different functional groups responded
 differently. Our results indicate that conclusions of plant stoichiometry
 under short-term N fertilization should be treated with caution when
 extrapolating to longer timescales.
description: Leaf N, P and N:P ratios
 and measurements of environmental factors in an temperate steppe, Xilin
 River Basin, Inner Mongolia, ChinaInclude leaf N, P and
 N:P ratios of 80 species in 1979 and 2006, soil traits of the sampling
 sites, the comparison of the two leaf N determination methods (Kjeldahl N
 determination and elemental analyzer), the precipitation of Xilin River
 Basin from 1953 to 2011.ElectronicSupplementaryMaterial_2014-12-09.docx
DOI: 10.25625/a2z8t8/vsvegd
title: footprint_2019_Vechta_MC_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/wqu4ze
title: Dornburg_AF_precipitation_1h.tab

description: :unav
DOI: 10.25625/a2z8t8/lq2mar
title: footprint_2023_Wendhausen_MC_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/1t3cch
title: footprint_2019_Wendhausen_MC_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/wafqjr
title: footprint_2023_Vechta_AF_80%.tab

description: :unav
DOI: 10.5061/dryad.cr829
title: Data from: Payoff-based learning explains the decline in cooperation in public goods games

description: Economic games such as the public goods game are increasingly being used
 to measure social behaviours in humans and non-human primates. The results
 of such games have been used to argue that people are pro-social, and that
 humans are uniquely altruistic, willingly sacrificing their own welfare in
 order to benefit others. However, an alternative explanation for the
 empirical observations is that individuals are mistaken, but learn, during
 the game, how to improve their personal payoff. We test between these
 competing hypotheses, by comparing the explanatory power of different
 behavioural rules, in public goods games, where individuals are given
 different amounts of information. We find: (i) that individual behaviour
 is best explained by a learning rule that is trying to maximize personal
 income; (ii) that conditional cooperation disappears when the consequences
 of cooperation are made clearer; and (iii) that social preferences, if
 they exist, are more anti-social than pro-social.
description: public good game
 dataAll the data for this
 paper, that was reanalysed, from Burton-Chellew, M. N. & West, S. A.
 2013. Prosocial preferences do not explain human cooperation in public
 goods games. PNAS 110: 216-221. Variable key is on sheet 2
 'instructions' of the excel file.Black_box_data_masterfile_compiled.xlsx
DOI: 10.25625/a2z8t8/y5rohd
title: Vechta_AF_meteo_30min.tab

description: :unav
DOI: 10.25625/a2z8t8/mjvsla
title: Mariensee_AF_fluxes_30min.tab

description: :unav
DOI: 10.25625/a2z8t8/xzov7l
title: Dornburg_MC_precipitation_1h.tab

description: :unav
DOI: 10.15468/dl.6cqnux
title: Occurrence Download

description: A dataset containing 5706 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "Country is one of (Albania, Montenegro)",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Phalacrocorax carbo, Microcarbo pygmeus, Microcarbo pygmaeus)",
 "Year 1970-2026"
 ]
}

 The dataset includes 5706 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001621-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25625/a2z8t8/soccx7
title: footprint_2020_Mariensee_MC_90%.tab

description: :unav
DOI: 10.5061/dryad.1dc8q
title: Data from: Available climate regimes drive niche diversification during range expansion

description: Climate is a main predictor of biodiversity on a global scale, yet how
 climate availability affects niche evolution remains poorly explored. Here
 we assess how intercontinental climate differences may affect the
 evolution of climate niches and suggest three possible processes: niche
 truncation along major environmental gradients, intercontinental
 differences in available climate causing differences in selective regimes,
 and niche shifts associated with long-distance dispersals leading to a
 pattern of punctuated evolution. Using the globally distributed
 danthonioid grasses, we show significant niche differentiation among
 continents and several instances of niche truncation. The comparison of
 inferred selective regimes with differences in available climatic space
 among continents demonstrates adaptation resulting from opportunistic
 evolution toward available climatic space. Our results suggest that niche
 evolution in this clade is punctuated, consistent with accelerated niche
 evolution after long-distance dispersal events. Finally, we discuss how
 intrinsic constraints (genetic, developmental, or functional) and biotic
 interactions could have interacted with these three processes during range
 expansion. Integrating these mechanisms could improve predictions for
 invasive taxa and long-term evolutionary responses of expanding clades to
 climate change.
description: Danthonioideae
 OccurrencesData with geographic
 locations for the 40,331 Danthoniodieae occurrences. Column names as
 follows: species name ('species'), longitude ('long')
 and latitude ('lat'), bioclimatic variables ('bio_1'
 to 'bio_19'), as extracted from the 'WorldClim'
 database (definitions see: http://www.worldclim.org/bioclim). Further
 information about WorldClim at Hijmans, R.J., S.E. Cameron, J.L. Parra,
 P.G. Jones and A. Jarvis, 2005. Very high resolution interpolated climate
 surfaces for global land areas. International Journal of Climatology 25:
 1965-1978. http://dx.doi.org/10.1002/joc.1276data.txt
DOI: 10.25625/a2z8t8/4yv0qd
title: footprint_2024_Forst_AF_90%.tab

description: :unav
DOI: 10.25625/a2z8t8/ymc4dp
title: footprint_2023_Dornburg_AF_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/qv8cfy
title: footprint_2020_Forst_AF_70%.tab

description: :unav
DOI: 10.5061/dryad.fd128
title: Data from: Odourant dominance in olfactory mixture processing: what makes a strong odourant

description: The question of how animals process stimulus mixtures remains
 controversial as opposing views propose that mixtures are processed
 analytically, as the sum of their elements, or holistically, as unique
 entities different from their elements. Overshadowing is a widespread
 phenomenon that can help decide between these alternatives. In
 overshadowing, an individual trained with a binary mixture learns one
 element better at the expense of the other. Although element salience
 (learning success) has been suggested as a main explanation for
 overshadowing, the mechanisms underlying this phenomenon remain unclear.
 We studied olfactory overshadowing in honeybees to uncover the mechanisms
 underlying olfactory-mixture processing. We provide, to our knowledge, the
 most comprehensive dataset on overshadowing to date based on 90
 experimental groups involving more than 2700 bees trained either with six
 odourants or with their resulting 15 binary mixtures. We found that bees
 process olfactory mixtures analytically and that salience alone cannot
 predict overshadowing. After normalizing learning success, we found that
 an unexpected feature, the generalization profile of an odourant, was
 determinant for overshadowing. Odourants that induced less generalization
 enhanced their distinctiveness and became dominant in the mixture. Our
 study thus uncovers features that determine odourant dominance within
 olfactory mixtures and allows the referring of this phenomenon to
 differences in neural activity both at the receptor and the central level
 in the insect nervous system.
description: Data from: Odourant
 dominance in olfactory mixture processing: what makes a strong
 odourantResponses of
 Overshadowing groups (AB trained), and Control groups (A trained and B
 trained) after one conditioning trialOVS - 1 trial -
 data_141205.xlsData from: Odourant
 dominance in olfactory mixture processing: what makes a strong
 odourantResponses of
 Overshadowing groups (AB trained), and Control groups (A trained and B
 trained) after three conditioning trialsOVS - 3 trials -
 data_141208.xls
DOI: 10.25625/a2z8t8/e3iqay
title: footprint_2024_Vechta_MC_90%.tab

description: :unav
DOI: 10.25625/a2z8t8/qjbjbx
title: footprint_2019_Dornburg_AF_90%.tab

description: :unav
DOI: 10.25625/a2z8t8/pgybpw
title: footprint_2022_Forst_MC_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/6dd2uy
title: footprint_Dornburg_MC_90%.tab

description: :unav
DOI: 10.25625/a2z8t8/bxmhsm
title: footprint_2019_Mariensee_AF_90%.tab

description: :unav
DOI: 10.5061/dryad.5gp25
title: Data from: Too much of a good thing: The unique and repeated paths toward copper adaptation

description: Copper is a micronutrient essential for growth due to its role as a
 co-factor in enzymes involved in respiration, defense against oxidative
 damage, and iron uptake. Yet too much of a good thing can be lethal, and
 yeast cells typically do not have tolerance to copper levels much beyond
 the concentration in their ancestral environment. Here, we report a
 short-term evolutionary study of Saccharomyces cerevisiae exposed to
 levels of copper sulfate that are inhibitory to the initial strain. We
 isolated and identified adaptive mutations soon after they arose, reducing
 the number of neutral mutations, to determine the first genetic steps that
 yeast take when adapting to copper. We analyzed 34 such strains through
 whole-genome sequencing and by assaying fitness within different
 environments; we also isolated a subset of mutations through tetrad
 analysis of four lines. We identified a multi-layered evolutionary
 response. In total, 57 single base-pair mutations were identified across
 the 34 lines. In addition, gene amplification of the copper
 metallothionein protein, CUP1, was rampant, as was chromosomal aneuploidy.
 Four other genes received multiple, independent mutations in different
 lines (the vacuolar transporter genes VTC1 and VTC4; the plasma membrane
 H+-ATPase PMA1; and MAM3, a protein required for normal mitochondrial
 morphology). Analyses indicated that mutations in all four genes, as well
 as CUP1 copy number, contributed significantly to explaining variation in
 copper tolerance. Our study thus finds that evolution takes both common
 and less trodden pathways toward evolving tolerance to an essential, but
 highly toxic, micronutrient.
description: Data package about
 copper adaptation in yeastThis package contains
 files and scripts related to the publication "Too much of a good
 thing: The unique and repeated paths toward copper adaptation". Raw
 data and analyses are included.DryadSubmission.zip
DOI: 10.25625/a2z8t8/narpr2
title: footprint_2021_Mariensee_MC_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/1o8cui
title: footprint_2019_Vechta_AF_90%.tab

description: :unav
DOI: 10.25625/a2z8t8/zofgrh
title: footprint_2019_Forst_AF_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/sepb7u
title: footprint_Mariensee_AF_80%.tab

description: :unav
DOI: 10.5061/dryad.8s96r
title: Data from: Should the WHO growth charts be used in France?

description: Background: Growth charts are an essential clinical tool for evaluating a
 child's health and development. The current French reference curves,
 published in 1979, have recently been challenged by the 2006 World Health
 Organization (WHO) growth charts. Objective: To evaluate and compare the
 growth of French children who were born between 1981 and 2007, with the
 WHO growth charts and the French reference curves currently used. Design:
 Anthropometric measurements from French children, who participated in 12
 studies, were analyzed: 82,151 measurements were available for 27,257
 children in different age groups, from birth to 18 years. We calculated
 and graphically compared mean z-scores based on the WHO and French curves,
 for height, weight and Body Mass Index (BMI) according to age and sex. The
 prevalence of overweight using the WHO, the French and International
 Obesity Task Force definitions were compared. Results: Our population of
 children was on average 0.5 standard deviations taller than the French
 reference population, from the first month of life until puberty age. Mean
 z-scores for height, weight and BMI were closer to zero based on the WHO
 growth charts than on the French references from infancy until late
 adolescence, except during the first six months. These differences not
 related to breastfeeding rates. As expected, the prevalence of overweight
 depended on the reference used, and differences varied according to age.
 Conclusion: The WHO growth charts may be appropriate for monitoring growth
 of French children, as the growth patterns in our large population of
 French children were closer to the WHO growth charts than to the French
 reference curves, from 6 months onwards. However, there were some
 limitations in the use of these WHO growth charts, and further
 investigation is needed.
description: Growth data
 0-5ygrowth_0_5.xlsGrowth data 5-18ygrowth_5_18.xlsGrowth data 0-5y breastfeedinggrowth_0_5 breastfeeding.xls
DOI: 10.25625/a2z8t8/4leh5m
title: footprint_2019_Wendhausen_AF_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/7dqttv
title: footprint_2022_Wendhausen_MC_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/mxmfuy
title: footprint_2023_Dornburg_MC_90%.tab

description: :unav
DOI: 10.25625/a2z8t8/wcgt34
title: footprint_2020_Dornburg_MC_90%.tab

description: :unav
DOI: 10.5061/dryad.21q24
title: Data from: Ancestor-descendant relationships in evolution: origin of the extant pygmy right whale, Caperea marginata

description: Ancestor–descendant relationships (ADRs), involving descent with
 modification, are the fundamental concept in evolution, but are usually
 difficult to recognize. We examined the cladistic relationship between the
 only reported fossil pygmy right whale, Miocaperea pulchra, and its sole
 living relative, the enigmatic pygmy right whale Caperea marginata, the
 latter represented by both adult and juvenile specimens. Miocaperea is
 phylogenetically bracketed between juvenile and adult Caperea marginata in
 morphologically based analyses, thus suggesting a possible ADR—the first
 so far identified within baleen whales (Cetacea: Mysticeti). The
 Miocaperea–Caperea lineage may show long-term morphological stasis and, in
 turn, punctuated equilibrium.
description: Tsai and Fordyce 2014
 ADR in Mysticeti supp 16Dec2014Tsai and Fordyce 2014
 ADR in Mysticeti for fig1a and 1bTsai and Fordyce 2014
 ADR in Mysticeti for fig1c and 1d
DOI: 10.25625/a2z8t8/mbn17x
title: footprint_2022_Vechta_MC_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/12uawr
title: footprint_Mariensee_AF_90%.tab

description: :unav
DOI: 10.25625/a2z8t8/4epqjq
title: footprint_2020_Vechta_AF_90%.tab

description: :unav
DOI: 10.25625/a2z8t8/hg8zqf
title: footprint_2024_Dornburg_MC_80%.tab

description: :unav