cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29432612
title: share_ready_trnL_SEEM.rds

description: Plant FoodSeq data - SEEM cohort
DOI: 10.6084/m9.figshare.29432612.v1
title: share_ready_trnL_SEEM.rds

description: Plant FoodSeq data - SEEM cohort
DOI: 10.15468/dl.6kn87p
title: Occurrence Download

description: A dataset containing 2622 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-104.05245 41.39323,-104.05321 41.00164,-103.5927 41.00166,-102.92572 41.00227,-102.05176 41.00233,-102.05143 40.43657,-102.05171 40.00317,-101.47497 40.00262,-100.64621 40.00194,-99.81381 40.0015,-99.19779 40.00204,-98.74515 40.00227,-98.04764 40.00214,-97.48183 40.00195,-96.59564 40.00114,-95.973 40.0006,-95.30809 39.99995,-95.39767 40.02858,-95.39703 40.12506,-95.47512 40.18064,-95.47585 40.24103,-95.55381 40.26294,-95.60353 40.31184,-95.69449 40.47205,-95.69733 40.52856,-95.76367 40.52861,-95.74899 40.60447,-95.79511 40.662,-95.88426 40.71957,-95.84524 40.76944,-95.84842 40.86318,-95.81443 40.90283,-95.82812 40.97295,-95.86954 41.00667,-95.86322 41.08501,-95.91519 41.18505,-95.95679 41.35093,-95.92847 41.46139,-95.99306 41.51204,-96.07945 41.5239,-96.12204 41.68268,-96.06449 41.79504,-96.16219 41.90263,-96.22355 42.03302,-96.27316 42.04606,-96.26843 42.11184,-96.34527 42.16326,-96.32297 42.23098,-96.40949 42.33916,-96.41531 42.40528,-96.38579 42.47528,-96.59962 42.50361,-96.70867 42.60204,-96.69741 42.6528,-96.79699 42.66782,-96.80726 42.70233,-96.96886 42.75417,-97.12961 42.77147,-97.2117 42.81054,-97.21724 42.84354,-97.35157 42.87369,-97.46814 42.84932,-97.76566 42.83774,-97.87397 42.85935,-97.91198 42.79561,-98.01567 42.76224,-98.14674 42.83954,-98.46801 42.94886,-98.49857 42.99867,-99.05727 42.99818,-99.78795 42.99765,-100.88737 42.99804,-101.69035 42.99608,-102.73316 42.99997,-103.48465 43.0007,-104.05308 43.00056,-104.05273 42.30447,-104.0526 41.98736,-104.05245 41.39323))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "TaxonKey is Squamata"
 ]
}

 The dataset includes 2622 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053036-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29432621
title: utility_functions.Rmd

description: Custom functions for data wrangling and analysis.
DOI: 10.6084/m9.figshare.29432621.v1
title: utility_functions.Rmd

description: Custom functions for data wrangling and analysis.
DOI: 10.15468/dl.dfzvtk
title: Occurrence Download

description: A dataset containing 48568 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((102.8285 6.04561,104.10078 6.57206,105.9434 8.28306,106.8647 9.64308,110.33056 11.66118,110.59379 13.67928,108.13698 16.96966,106.16275 18.98776,108.04923 20.34778,107.21567 22.71685,105.59242 23.63816,102.96012 23.15557,100.45943 22.45362,98.09036 20.34778,96.81808 18.59291,97.47616 16.17997,96.86195 13.8109,97.47616 9.16049,99.36264 6.52819,101.33687 5.08043,102.8285 6.04561))",
 "OccurrenceStatus is Present",
 "TaxonKey is Culicidae"
 ]
}

 The dataset includes 48568 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053037-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s6busn
title: Occurrence Download

description: A dataset containing 233 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "Month is one of (January, February, March, April, May, June, July, August, September, October, November, December)",
 "OccurrenceStatus is Present",
 "TaxonKey is Piper nigrum",
 "Year 1980-2025"
 ]
}

 The dataset includes 233 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053038-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30881606
title: Metadata for revision analyses

description: Metadata columns for manuscript revision analyses
DOI: 10.6084/m9.figshare.30881606.v1
title: Metadata for revision analyses

description: Metadata columns for manuscript revision analyses
DOI: 10.15468/dl.rmrp6v
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.28_1",
 "TaxonKey is Astragalus pavlovii"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053039-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7qxn7q
title: Occurrence Download

description: A dataset containing 329196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 39.085278",
 "DecimalLatitude is less than or equal to 44.085278",
 "DecimalLongitude is greater than or equal to -120.0",
 "DecimalLongitude is less than or equal to -115.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 329196 records from 235 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053026-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30882482
title: data assets

description: research on data assets
DOI: 10.6084/m9.figshare.30882482.v1
title: data assets

description: research on data assets
DOI: 10.21979/n9/s267s3
title: Replication Data for: Gate-tunable flat bands in van der Waals patterned dielectric superlattices

description: This dataset contains data for the paper "Gate-tunable flat bands in van der Waals patterned dielectric superlattices"
DOI: 10.15468/dl.abwqhg
title: Occurrence Download

description: A dataset containing 336 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is Indonesia",
 "Geometry POLYGON((94.91352 6.27433,93.61963 4.56689,100.48103 -5.56928,104.92701 -6.20066,107.45076 -5.47265,109.02001 -2.85184,104.66519 1.34089,103.55592 1.14463,103.06101 1.49551,101.83366 2.12224,99.14395 4.7075,94.91352 6.27433))",
 "TaxonKey is Presbytis thomasi"
 ]
}

 The dataset includes 336 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053040-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15656365
title: Training data of PBCNet2.0

description: Our paper:Advancing Ligand Binding Affinity Prediction with Cartesian Tensor-Based Deep Learning (Under Review)

PBCNet2.0_training_BindingDB.zip contains all data extracted from BindingDB.

training_clip_862W.zip serves as the training dataset for PBCNet2.0.Please note: Some data extracted from BindingDB were excluded from PBCNet2.0's training.
DOI: 10.6084/m9.figshare.30881600
title: Metadata dictionary revised

description: Data dictionary for analyses.
DOI: 10.6084/m9.figshare.30881600.v1
title: Metadata dictionary revised

description: Data dictionary for analyses.
DOI: 10.6084/m9.figshare.30882512
title: Supplementary Material for: Effect of Water Temperature during Aquatic Exercise on Cognitive Impairment in Mice with Chronic Cerebral Hypoperfusion

description: Introduction: Given the lack of effective pharmacotherapy for vascular dementia (VaD) and the reported benefits of exercise, this study examined the impact of water temperature during aquatic exercise (AE) on cognitive and pathological outcomes in a mouse model of VaD.
Methods: Twelve-month-old male mice underwent bilateral common carotid artery stenosis (BCAS) to induce chronic cerebral hypoperfusion. Groups included sham, BCAS-control (no exercise), and BCAS mice assigned to AE in water baths at 25℃, 30℃, or 35℃. 
Cognitive performance was assessed using the elevated plus maze, Y-maze, and novel object recognition test (NORT). Brain tissues were analyzed for microglial marker CD68, astrocytic marker GFAP, and myelin basic protein (MBP) in the corpus callosum.
Results: The 30℃ AE group showed the greatest improvement in NORT performance and swim activity. CD68 expression was unchanged across groups, but GFAP expression was significantly reduced at 30℃, suggesting suppressed astrocyte activation. Furthermore, the decline in MBP expression after BCAS was attenuated in this group, indicating preserved white matter integrity.
Conclusion: AE at approximately 30℃ alleviated cognitive deficits in a VaD model, likely by reducing neuroinflammation and protecting myelin. These findings highlight the therapeutic potential of optimizing AE conditions, particularly water temperature, for dementia-related rehabilitation.
DOI: 10.6084/m9.figshare.30882512.v1
title: Supplementary Material for: Effect of Water Temperature during Aquatic Exercise on Cognitive Impairment in Mice with Chronic Cerebral Hypoperfusion

description: Introduction: Given the lack of effective pharmacotherapy for vascular dementia (VaD) and the reported benefits of exercise, this study examined the impact of water temperature during aquatic exercise (AE) on cognitive and pathological outcomes in a mouse model of VaD.
Methods: Twelve-month-old male mice underwent bilateral common carotid artery stenosis (BCAS) to induce chronic cerebral hypoperfusion. Groups included sham, BCAS-control (no exercise), and BCAS mice assigned to AE in water baths at 25℃, 30℃, or 35℃. 
Cognitive performance was assessed using the elevated plus maze, Y-maze, and novel object recognition test (NORT). Brain tissues were analyzed for microglial marker CD68, astrocytic marker GFAP, and myelin basic protein (MBP) in the corpus callosum.
Results: The 30℃ AE group showed the greatest improvement in NORT performance and swim activity. CD68 expression was unchanged across groups, but GFAP expression was significantly reduced at 30℃, suggesting suppressed astrocyte activation. Furthermore, the decline in MBP expression after BCAS was attenuated in this group, indicating preserved white matter integrity.
Conclusion: AE at approximately 30℃ alleviated cognitive deficits in a VaD model, likely by reducing neuroinflammation and protecting myelin. These findings highlight the therapeutic potential of optimizing AE conditions, particularly water temperature, for dementia-related rehabilitation.
DOI: 10.6084/m9.figshare.30882515
title: Supplementary Material for: Inflammation and Perceived Social Support in Elite Athletes (A Quantile Regression Approach)

description: Introduction: Inflammation and social relationships are bidirectionally linked, yet evidence in young, non-clinical populations is scarce. Given that elite athletes face continuous immune challenges and unique social conditions, this cohort provides a model to explore this association. Methods: Several quantile regressions were computed across 422 elite athletes. To account for both the magnitude of inflammation and the characteristics of social relationships, quantiles were determined based on the concentrations of TNF-α, IL-6, and the Systemic Inflammatory Response Index (SIRI) as well as on measures of the total, general perceived social support. The corresponding predictors were social support and the inflammatory markers. Results: A higher total, general perceived social support predicted a significantly lower SIRI in the lowest quartile as well as lower concentrations of the cytokines in the highest three quartiles. Effects were small but robust. Moreover, higher inflammation predicted a lower total, general perceived social support in elite athletes, when the perceived social support was relatively moderate. However, this effect was not robust when covariates, such as urea or the living situation, were added to the models. Conclusion: Results suggest that elite athletes’ social relationships are a small yet important factor influencing the inflammatory response. The social support elite athletes perceive, however, appears to be influenced by inflammation only under specific biopsychosocial conditions.
DOI: 10.6084/m9.figshare.30882515.v1
title: Supplementary Material for: Inflammation and Perceived Social Support in Elite Athletes (A Quantile Regression Approach)

description: Introduction: Inflammation and social relationships are bidirectionally linked, yet evidence in young, non-clinical populations is scarce. Given that elite athletes face continuous immune challenges and unique social conditions, this cohort provides a model to explore this association. Methods: Several quantile regressions were computed across 422 elite athletes. To account for both the magnitude of inflammation and the characteristics of social relationships, quantiles were determined based on the concentrations of TNF-α, IL-6, and the Systemic Inflammatory Response Index (SIRI) as well as on measures of the total, general perceived social support. The corresponding predictors were social support and the inflammatory markers. Results: A higher total, general perceived social support predicted a significantly lower SIRI in the lowest quartile as well as lower concentrations of the cytokines in the highest three quartiles. Effects were small but robust. Moreover, higher inflammation predicted a lower total, general perceived social support in elite athletes, when the perceived social support was relatively moderate. However, this effect was not robust when covariates, such as urea or the living situation, were added to the models. Conclusion: Results suggest that elite athletes’ social relationships are a small yet important factor influencing the inflammatory response. The social support elite athletes perceive, however, appears to be influenced by inflammation only under specific biopsychosocial conditions.
DOI: 10.6084/m9.figshare.30882518
title: Supplementary Material for: Effectiveness of combined cognitive processing therapy with stellate ganglion block: an open-label randomized wait-list clinical trial

description: Introduction: Posttraumatic stress disorder (PTSD) is common among military personnel and veterans and is associated with numerous psychological problems and negative outcomes. First-line cognitive-behavioral treatments like cognitive processing therapy (CPT) are effective in treating PTSD, especially when delivered in a massed (i.e., daily) format. However, many patients, especially military personnel and veterans, continue to struggle with PTSD symptoms after CPT, which warrants further research to augment CPT’s effects. Stellate ganglion block (SGB), which is a long-acting anesthetic injection that is proposed to “reset” sympathetic arousal and physical reactivity, is a promising adjunctive intervention, with previous research demonstrating reduced PTSD symptoms. The effectiveness of CPT combined with SGB remains understudied.
Methods: In this open-label randomized wait-list trial, 86 military personnel and veterans were assigned to receive SGB before or after massed CPT. PTSD symptoms were assessed using the PTSD Checklist for DSM-5 (PCL-5). 
Results: Relative to baseline, PCL-5 scores decreased in both groups (SGB-before-CPT: F(12,724)=23.4, p&lt;.001; SGB-after-CPT: F(12,724)=21.1, p&lt;.001), but reductions in PTSD symptoms were faster in SGB-before-CPT. Among the SGB-after-CPT participants who had not yet reached good end-state functioning by week 8, PCL-5 scores significantly decreased after they received the SGB procedure in week 12.
Conclusion: Results support SGB increasing CPT’s effectiveness when received prior to CPT. Additionally, military personnel and veterans who do not benefit from an initial course of massed CPT have significant reductions in PTSD symptoms when SGB was performed after CPT. SGB before CPT appears especially useful for patients looking for faster treatment response.
DOI: 10.6084/m9.figshare.30882518.v1
title: Supplementary Material for: Effectiveness of combined cognitive processing therapy with stellate ganglion block: an open-label randomized wait-list clinical trial

description: Introduction: Posttraumatic stress disorder (PTSD) is common among military personnel and veterans and is associated with numerous psychological problems and negative outcomes. First-line cognitive-behavioral treatments like cognitive processing therapy (CPT) are effective in treating PTSD, especially when delivered in a massed (i.e., daily) format. However, many patients, especially military personnel and veterans, continue to struggle with PTSD symptoms after CPT, which warrants further research to augment CPT’s effects. Stellate ganglion block (SGB), which is a long-acting anesthetic injection that is proposed to “reset” sympathetic arousal and physical reactivity, is a promising adjunctive intervention, with previous research demonstrating reduced PTSD symptoms. The effectiveness of CPT combined with SGB remains understudied.
Methods: In this open-label randomized wait-list trial, 86 military personnel and veterans were assigned to receive SGB before or after massed CPT. PTSD symptoms were assessed using the PTSD Checklist for DSM-5 (PCL-5). 
Results: Relative to baseline, PCL-5 scores decreased in both groups (SGB-before-CPT: F(12,724)=23.4, p&lt;.001; SGB-after-CPT: F(12,724)=21.1, p&lt;.001), but reductions in PTSD symptoms were faster in SGB-before-CPT. Among the SGB-after-CPT participants who had not yet reached good end-state functioning by week 8, PCL-5 scores significantly decreased after they received the SGB procedure in week 12.
Conclusion: Results support SGB increasing CPT’s effectiveness when received prior to CPT. Additionally, military personnel and veterans who do not benefit from an initial course of massed CPT have significant reductions in PTSD symptoms when SGB was performed after CPT. SGB before CPT appears especially useful for patients looking for faster treatment response.
DOI: 10.5281/zenodo.17934141
title: Resolving the spurious-state problem in Dirac equation by using the staggered-grid method

description: Dataset: Resolving the spurious-state problem in Dirac equation by using the staggered-grid method

1. Project Description

This repository contains



the data used to reproduce figures in the accompany paper

the Staggered Grid Method code (staggered-grid-method.py) used to solve Dirac equation with Woods-Saxon potential


2. Figures' Data

The file Data_Fig2.xlsx presents numerical results of different methods with different lattice number to investigate their convergency. The files Data_Fig3.xlsx and Data_Fig4.xlsx are wavefunctions of state 3p_{3/2}, and they corresponds to FIG. 3 and FIG. 4, respectively. 

3. Python Code

Requirements



Python 3.12.6

Package: numpy, scipy, matplotlib and pandas


Installation & Run

pip install numpy

pip install scipy

pip install matplotlib

pip install pandas
DOI: 10.5281/zenodo.17934142
title: Resolving the spurious-state problem in Dirac equation by using the staggered-grid method

description: Dataset: Resolving the spurious-state problem in Dirac equation by using the staggered-grid method

1. Project Description

This repository contains



the data used to reproduce figures in the accompany paper

the Staggered Grid Method code (staggered-grid-method.py) used to solve Dirac equation with Woods-Saxon potential


2. Figures' Data

The file Data_Fig2.xlsx presents numerical results of different methods with different lattice number to investigate their convergency. The files Data_Fig3.xlsx and Data_Fig4.xlsx are wavefunctions of state 3p_{3/2}, and they corresponds to FIG. 3 and FIG. 4, respectively. 

3. Python Code

Requirements



Python 3.12.6

Package: numpy, scipy, matplotlib and pandas


Installation & Run

pip install numpy

pip install scipy

pip install matplotlib

pip install pandas
DOI: 10.34740/kaggle/dsv/14160819
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.q32sqs
title: Occurrence Download

description: A dataset containing 3129 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Zinnia peruviana"
 ]
}

 The dataset includes 3129 records from 165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053041-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17935104
title: GMT file for Anopheles gambiae pathways

description: Monthly data release from WikiPathways.org
DOI: 10.5281/zenodo.17935105
title: GMT file for Arabidopsis thaliana pathways

description: Monthly data release from WikiPathways.org
DOI: 10.5281/zenodo.17935106
title: GMT file for Bos taurus pathways

description: Monthly data release from WikiPathways.org
DOI: 10.15468/dl.57buzt
title: Occurrence Download

description: A dataset containing 615 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "OccurrenceStatus is Present",
 "TaxonKey is Piper nigrum"
 ]
}

 The dataset includes 615 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053042-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17935109
title: GMT file for Caenorhabditis elegans pathways

description: Monthly data release from WikiPathways.org
DOI: 10.5281/zenodo.17935112
title: GMT file for Canis familiaris pathways

description: Monthly data release from WikiPathways.org
DOI: 10.5281/zenodo.17935113
title: GMT file for Danio rerio pathways

description: Monthly data release from WikiPathways.org
DOI: 10.5281/zenodo.17935114
title: GMT file for Drosophila melanogaster pathways

description: Monthly data release from WikiPathways.org
DOI: 10.5281/zenodo.17935117
title: GMT file for Equus caballus pathways

description: Monthly data release from WikiPathways.org
DOI: 10.15468/dl.36rcqx
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "TaxonKey is Taxus wallichiana mairei",
 "Year 1970-2000"
 ]
}

 The dataset includes 91 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053043-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17935120
title: GMT file for Gallus gallus pathways

description: Monthly data release from WikiPathways.org
DOI: 10.5281/zenodo.17935129
title: GMT file for Homo sapiens pathways

description: Monthly data release from WikiPathways.org
DOI: 10.5281/zenodo.17935130
title: GMT file for Mus musculus pathways

description: Monthly data release from WikiPathways.org
DOI: 10.5517/ccdc.csd.cc2nfhh3
title: CCDC 2455835: Experimental Crystal Structure Determination

description: Related Article: Qiang-Qiang Jia, Gele Teri, Qi-Fang Zhou, Jia-Qi Luo, Hao-Fei Ni, Pei-Zhi Huang, Pei-Guo Liu, Lei Pan, Chang-Feng Wang, Zunqi Liu, Zhi-Xu Zhang, Yi Zhang, Da-Wei Fu|2025|Angew.Chem.,Int.Ed.|64|e202514669|doi:10.1002/anie.202514669
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.