cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7559852
title: Supplementary Data4 from A Western route of prehistoric human migration from Africa into the Iberian Peninsula

description: Being at the Western fringe of Europe, Iberia had a peculiar prehistory and a complex pattern of Neolithization. A few studies, all based on modern populations, reported the presence of DNA of likely African origin in this region, generally concluding it was the result of recent gene flow, probably during the Islamic period. Here, we provide evidence of much older gene flow from Africa to Iberia by sequencing whole genomes from four human remains from Northern Portugal and Southern Spain dated around 4000 years BP (from the Middle Neolithic to the Bronze Age). We found one of them to carry an unequivocal Sub-Saharan mitogenome of most probably West or West-Central African origin, never reported before in prehistoric remains outside Africa. Our analyses of ancient nuclear genomes show small but significant levels of Sub-Saharan African affinity in several ancient Iberian samples, which indicates that what we detected was not an occasional individual phenomenon, but an admixture event recognizable at the population level. We interpret this result as evidence of an early migration process from Africa into the Iberian Peninsula through a Western route, possibly across the Strait of Gibraltar.
DOI: 10.6084/m9.figshare.7559858.v1
title: Supplementary Data3: Human Origins dataset from A Western route of prehistoric human migration from Africa into the Iberian Peninsula

description: Details of samples used in Population Genetic Analysis that were based on the Human Origins dataset.
DOI: 10.7284/115539
title: Singlebeam Echosounder data collected during research cruise HLY14TD using a Knudsen 3260 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7559849
title: Supplementary Table S4: D-statistics output from A Western route of prehistoric human migration from Africa into the Iberian Peninsula

description: Table S4 reports the results from D-statistic analysis.
DOI: 10.6084/m9.figshare.7559852.v1
title: Supplementary Data4 from A Western route of prehistoric human migration from Africa into the Iberian Peninsula

description: Being at the Western fringe of Europe, Iberia had a peculiar prehistory and a complex pattern of Neolithization. A few studies, all based on modern populations, reported the presence of DNA of likely African origin in this region, generally concluding it was the result of recent gene flow, probably during the Islamic period. Here, we provide evidence of much older gene flow from Africa to Iberia by sequencing whole genomes from four human remains from Northern Portugal and Southern Spain dated around 4000 years BP (from the Middle Neolithic to the Bronze Age). We found one of them to carry an unequivocal Sub-Saharan mitogenome of most probably West or West-Central African origin, never reported before in prehistoric remains outside Africa. Our analyses of ancient nuclear genomes show small but significant levels of Sub-Saharan African affinity in several ancient Iberian samples, which indicates that what we detected was not an occasional individual phenomenon, but an admixture event recognizable at the population level. We interpret this result as evidence of an early migration process from Africa into the Iberian Peninsula through a Western route, possibly across the Strait of Gibraltar.
DOI: 10.6084/m9.figshare.7559843
title: Supplementary Data1: Mitochondrial Phylogeny Dataset from A Western route of prehistoric human migration from Africa into the Iberian Peninsula

description: Details of samples included in the mitochondrial phylogeny. It is related to Figure 2 in Main Text.
DOI: 10.6084/m9.figshare.7559846
title: Supplementary Data2: Whole genome dataset from A Western route of prehistoric human migration from Africa into the Iberian Peninsula

description: Details of samples used in the D-statistic analysis.
DOI: 10.6084/m9.figshare.7559849.v1
title: Supplementary Table S4: D-statistics output from A Western route of prehistoric human migration from Africa into the Iberian Peninsula

description: Table S4 reports the results from D-statistic analysis.
DOI: 10.7284/114735
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HLY14TE using a Hawaii UHDAS instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7559843.v1
title: Supplementary Data1: Mitochondrial Phylogeny Dataset from A Western route of prehistoric human migration from Africa into the Iberian Peninsula

description: Details of samples included in the mitochondrial phylogeny. It is related to Figure 2 in Main Text.
DOI: 10.6084/m9.figshare.7559846.v1
title: Supplementary Data2: Whole genome dataset from A Western route of prehistoric human migration from Africa into the Iberian Peninsula

description: Details of samples used in the D-statistic analysis.
DOI: 10.7284/121343
title: Fluorometer data collected during research cruise HLY14TE using a Turner C3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121344
title: Fluorometer data collected during research cruise HLY14TE using a Turner C3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7559816
title: R-code in knitr format used in the analysis of extreme down-regulation of chromosome Y

description: Code required to perform all the analyses of extreme down-regulation of chromosome on the pre and post-processed data from multiple sources (RNA-seq/microrray, GTEx, TCGA, GEO, ArrayExpress) in file data.tar.gz. <br>
DOI: 10.7284/121345
title: Fluorometer data collected during research cruise HLY14TE using a Seapoint SCF instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7559816.v1
title: R-code in knitr format used in the analysis of extreme down-regulation of chromosome Y

description: Code required to perform all the analyses of extreme down-regulation of chromosome on the pre and post-processed data from multiple sources (RNA-seq/microrray, GTEx, TCGA, GEO, ArrayExpress) in file data.tar.gz. <br>
DOI: 10.6084/m9.figshare.7559807
title: Investor Profile Analysis dataset

description: Data set used in the paper "Personality Traits, and Investor Profile Analysis"
DOI: 10.7284/115547
title: Gravimeter data collected during research cruise HLY14TE using a Bell BGM-3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114737
title: INS (Inertial Navigation System) data collected during research cruise HLY14TE using a Kongsberg Seapath 330+ instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121342
title: Meteorological Station data collected during research cruise HLY14TE using a SIO MET-System instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114736
title: Multibeam Echosounder data collected during research cruise HLY14TE using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7559771
title: Willingness to pay for Hepatitis B vaccination in Selangor, Malaysia

description: The aim of this study was to investigate the determinants of willingness to pay (WTP) for adult HepB vaccines in Selangor, Malaysia. WTP for hepatitis B (HepB) vaccine was estimated using the Contingent Valuation Method, and factors affecting WTP were modeled with logit regression.
DOI: 10.7284/121346
title: Oxygen data collected during research cruise HLY14TE using a Sea-Bird SBE-43 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121347
title: Oxygen data collected during research cruise HLY14TE using a Sea-Bird SBE-43 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7559738
title: LZY33-LZY103-1

description: Illumina sequence data of seven strains
DOI: 10.7284/115535
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise HLY14TE using a LDEO pCO2 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115541
title: Singlebeam Echosounder data collected during research cruise HLY14TE using a Knudsen 3260 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7559738.v1
title: LZY33-LZY103-1

description: Illumina sequence data of seven strains
DOI: 10.7284/121349
title: Fluorometer data collected during research cruise HLY14TF using a Turner C3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7559699
title: Metabolomics approach to investigate phytotoxic effects of <i>Wedelia trilobata</i> leaves, litter and soil

description: Although release and accumulation of plant metabolites from plant into soil can influence allelopathy, little information is known about metabolite changes that occur in leaf, litter and soil. In this study, seed germination bioassay tests and metabolomics analysis were performed to investigate the phytotoxic effects and metabolic variations (measured as buckets) in the ethanolic extracts of leaf, leaf litter and soil of <i>Wedelia trilobata</i>. Increasing the ethanolic extracts concentration of all extracts significantly inhibited <i>Lactuca sativa</i> germination rate (GR), shoot height (SH) and root length (RL). Soil exerted the strongest inhibition but contained the lowest number of buckets relative to those of leaf and leaf litter extracts. An overlap overview on the metabolome revealed a poor bucket overlap and redundancy among the leaf, leaf litter and soil extracts. Canonical correspondence analysis concluded that the SH of <i>L. sativa</i> was more sensitive to leaf litter extract and the leaf extract exerted a strong influence on the GR and RL of <i>L. sativa</i>. Multivariate analysis suggested that the metabolome of the leaf, leaf litter and soil differ substantially. Finally, putative identification using MS/MS data demonstrated various plant metabolites with phytotoxic effects that can contribute to the allelopathy of <i>W. trilobata</i>.
DOI: 10.6084/m9.figshare.7559699.v1
title: Metabolomics approach to investigate phytotoxic effects of <i>Wedelia trilobata</i> leaves, litter and soil

description: Although release and accumulation of plant metabolites from plant into soil can influence allelopathy, little information is known about metabolite changes that occur in leaf, litter and soil. In this study, seed germination bioassay tests and metabolomics analysis were performed to investigate the phytotoxic effects and metabolic variations (measured as buckets) in the ethanolic extracts of leaf, leaf litter and soil of <i>Wedelia trilobata</i>. Increasing the ethanolic extracts concentration of all extracts significantly inhibited <i>Lactuca sativa</i> germination rate (GR), shoot height (SH) and root length (RL). Soil exerted the strongest inhibition but contained the lowest number of buckets relative to those of leaf and leaf litter extracts. An overlap overview on the metabolome revealed a poor bucket overlap and redundancy among the leaf, leaf litter and soil extracts. Canonical correspondence analysis concluded that the SH of <i>L. sativa</i> was more sensitive to leaf litter extract and the leaf extract exerted a strong influence on the GR and RL of <i>L. sativa</i>. Multivariate analysis suggested that the metabolome of the leaf, leaf litter and soil differ substantially. Finally, putative identification using MS/MS data demonstrated various plant metabolites with phytotoxic effects that can contribute to the allelopathy of <i>W. trilobata</i>.
DOI: 10.7284/121350
title: Fluorometer data collected during research cruise HLY14TF using a Turner C3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7559678
title: Supplementary Tables and Figure for manuscript "The Neurospora crassa standard Oak Ridge background exhibits atypically efficient meiotic silencing by unpaired DNA".

description: Table S1 lists the Neurospora strains used.Table S2 lists the oligonucleotide primers used.Table S3 summarizes the genome sequencing statistics.Table S4 presents the round ascospore fractions from crosses involving the ::r1 strains.Table S5 presents the round ascospore fractions in the lid harvests from crosses involving the ::r3 strains.Table S6 presents the round ascospore fractions in the lid harvests from crosses involving the ::r1 strains.<br>Figure S1 is a schematic depiction of the derivation of the <i>Sad-2<sup>Nt</sup> </i>strains.
DOI: 10.7284/121351
title: Fluorometer data collected during research cruise HLY14TF using a Seapoint SCF instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7559678.v1
title: Supplementary Tables and Figure for manuscript "The Neurospora crassa standard Oak Ridge background exhibits atypically efficient meiotic silencing by unpaired DNA".

description: Table S1 lists the Neurospora strains used.Table S2 lists the oligonucleotide primers used.Table S3 summarizes the genome sequencing statistics.Table S4 presents the round ascospore fractions from crosses involving the ::r1 strains.Table S5 presents the round ascospore fractions in the lid harvests from crosses involving the ::r3 strains.Table S6 presents the round ascospore fractions in the lid harvests from crosses involving the ::r1 strains.<br>Figure S1 is a schematic depiction of the derivation of the <i>Sad-2<sup>Nt</sup> </i>strains.
DOI: 10.6084/m9.figshare.7559615
title: Stem anatomy of <i>Turbinicarpus s.l</i>. (Cacteae, Cactaceae) and its contribution to systematics

description: The stem anatomy of <i>Turbinicarpus s.l.</i> was studied with the aims of finding characters to support the three clades (Rapicactus, Kadenicarpus, and Turbinicarpus) in which <i>Turbinicarpus s.l</i>. was recovered in the most recent phylogeny of the Cacteae tribe. Thirty-five taxa were prepared, and their tissues were compared. Substantial variation was found in the epidermal surface. The hypodermis has concentric druses (Rapicactus clade) or prismatic crystals (Kadenicarpus and Turbinicarpus clades) in the cell lumina. There are abundant collateral cortical bundles, but they are amphicribal in a few taxa, and xylary fibers occur in the Kadenicarpus clade. All members of <i>Turbinicarpus s.l</i>. have phloem without sclerenchyma and nonfibrous wood, except for <i>T. subterraneus</i>, which has wood with few fibers. The periderm has an epidermal origin, and the phellem may have thin-walled cells or alternating thin- to thick-walled layers. Our results support the three clades. The Kadenicarpus clade comprises the species with xylary fibers in cortical bundles, but it shares prismatic crystals in the hypodermis, thin-walled phellem cells and partially dilated rays with the Turbinicarpus clade. The members of the Rapicactus clade have concentric druses in the hypodermis. The anatomical features proved to be valuable to support the recognition of monophyletic clades.
DOI: 10.7284/115548
title: Gravimeter data collected during research cruise HLY14TF using a Bell BGM-3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114739
title: INS (Inertial Navigation System) data collected during research cruise HLY14TF using a Kongsberg Seapath 330+ instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121348
title: Meteorological Station data collected during research cruise HLY14TF using a SIO MET-System instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114738
title: Multibeam Echosounder data collected during research cruise HLY14TF using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121352
title: Oxygen data collected during research cruise HLY14TF using a Sea-Bird SBE-43 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121353
title: Oxygen data collected during research cruise HLY14TF using a Sea-Bird SBE-43 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121552
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HLY1501 using a Hawaii UHDAS instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121553
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HLY1501 using a Sea-Bird SBE-911+ instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121554
title: Fluorometer data collected during research cruise HLY1501 using a Turner C3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121557
title: Fluorometer data collected during research cruise HLY1501 using a Seapoint SCF instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121551
title: Gravimeter data collected during research cruise HLY1501 using a Bell BGM-3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121549
title: INS (Inertial Navigation System) data collected during research cruise HLY1501 using a Kongsberg Seapath 330+ instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121548
title: Multibeam Echosounder data collected during research cruise HLY1501 using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121555
title: Oxygen data collected during research cruise HLY1501 using a Sea-Bird SBE-43 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121556
title: Oxygen data collected during research cruise HLY1501 using a Sea-Bird SBE-43 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121550
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise HLY1501 using a LDEO pCO2 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121447
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HLY1502 using a Hawaii UHDAS instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121446
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HLY1502 using a Sea-Bird SBE-911+ instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121448
title: Expendable Probe data collected during research cruise HLY1502 using a Sippican MK21 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121559
title: Meteorological Station data collected during research cruise HLY1502 using a SIO MET-System instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121442
title: Multibeam Echosounder data collected during research cruise HLY1502 using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7559453
title: Additional file 4: of High-resolution Quaternary record of marine organic carbon content in the hemipelagic sediments of the Japan Sea from bromine counts measured by XRF core scanner

description: Table S2. Raw data of Br counts and MOC content shown in Fig. 7. (XLSX 1443 kb)
DOI: 10.6084/m9.figshare.7559453.v1
title: Additional file 4: of High-resolution Quaternary record of marine organic carbon content in the hemipelagic sediments of the Japan Sea from bromine counts measured by XRF core scanner

description: Table S2. Raw data of Br counts and MOC content shown in Fig. 7. (XLSX 1443 kb)
DOI: 10.7284/121443
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise HLY1502 using a LDEO pCO2 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121444
title: Singlebeam Echosounder data collected during research cruise HLY1502 using a Knudsen 3260 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124209
title: Meteorological Station data collected during research cruise HLY15TA using a SIO MET-System instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124212
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HLY15TB using a Hawaii UHDAS instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124213
title: Fluorometer data collected during research cruise HLY15TB using a Seapoint SCF instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124214
title: Fluorometer data collected during research cruise HLY15TB using a Turner C3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124217
title: Gravimeter data collected during research cruise HLY15TB using a Bell BGM-3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124211
title: INS (Inertial Navigation System) data collected during research cruise HLY15TB using a Kongsberg Seapath 330+ instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124210
title: Multibeam Echosounder data collected during research cruise HLY15TB using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition