cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/ndw-1x8-pvt
title: †Lepidocyclina Gümbel, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xra-dd1-jfr
title: Sphincterochila Ancey, 1887

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/89h-mkq-4f0
title: Amphistegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8an-s4n-1c8
title: Amphistegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/erv-f18-0yf
title: Rotalia orbicularis (Terquem, 1882)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gkg-01f-sqq
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y7d-ylp-vdm
title: †Nephrolepidina sumatrensis (Brady, 1875)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hlk-j57-vbs
title: Planorbulina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kml-5hy-khf
title: Cycloclypeus W.B. Carpenter, 1856

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nkp-h4q-8wn
title: Cycloclypeus carpenteri Brady, 1881

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rz7-66w-1l1
title: Triloculina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/za6-nyk-sj9
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mys-237-5ct
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sbe-nm7-te6
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xdb-exe-4xa
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3r8-jx4-g5m
title: Heterostegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/92x-b3q-5h4
title: Globigerina bulloides d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.entmqf
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cryptosula pallasiana",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011749-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/nw6-460-f23
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zcs-9jl-evz
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8eh-2jj-pa3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ltq-a49-33v
title: †Miogypsina Sacco, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/558-4ql-hg9
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cs2-la4-plh
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a88-a22-tgd
title: Juglans L.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k79-6eq-s9d
title: †Nummulites fichteli Michelotti, 1841

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5cw-nsz-2a8
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/63z-5zq-hr7
title: †Heterostegina (Vlerkina) borneensis van der Vlerk, 1929

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.sfnjnf
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cryptosula pallasiana",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011750-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/23f-4m8-7qq
title: Heterostegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fqz-q9f-2ms
title: †Lepidocyclina (Nephrolepidina) nephrolepidinoides Boudagher-Fadel & Lord, 2000

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/944-wwj-b98
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2nc-rw8-q44
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tkp-bkp-93s
title: †Spiroclypeus margaritatus (Schlumberger, 1902)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/398-f5w-4qv
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/baz-4a3-cm9
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4xv-bb7-61n
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l96-7ah-0as
title: Rotaliidae Ehrenberg, 1839

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2vd-s2t-d9r
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xj2-lmz-nvy
title: †Asterocyclina stellata (d'Archiac, 1846)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3wy-qj7-rm5
title: †Austrotrillina howchini (Schlumberger, 1893)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/20z-3ga-wyl
title: Cycloclypeus carpenteri Brady, 1881

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/re0-2vv-526
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fg3-gw4-179
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n3r-y3j-cv1
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s7j-7q6-g49
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sn1-517-dl5
title: †Pellatispira Boussac, 1906

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3zz-26g-6m4
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k4q-7x4-mk3
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fmt-5wk-ppy
title: Rotalia papillosa Brady, 1884

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xqp-l3d-da2
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/afs-t5e-nps
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ag4-ffx-wz8
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ttf-bf9-p1t
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mtq-4aw-2gk
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p7v-rmc-j8r
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/89v-xrl-6st
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ppd-ptj-tr6
title: †Spiroclypeus Douvillé, 1905

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kdj-x2r-jzy
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/11p-zjp-tvt
title: Cycloclypeus carpenteri Brady, 1881

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jgy-ss4-s5z
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m6q-ker-4x2
title: Amphistegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/te7-a8d-2ef
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vrv-0gw-hts
title: †Lepidocyclina Gümbel, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.17519661
title: Genotyping data (11 microsatellites, 93 AFLPs) in Antirrhinum charidemi, from Forrest et al 2017.

description: Genotying matrices of Antirrhinum charidemi sampled in 8 locations in southern Spain, and genotyped at 11 microsatellites (111 inidivuals) and 93 AFLP loci (90 individuals). The data analysis is published in Forrest et al 2017.

Forrest, Alan, Marcial Escudero, Myriam Heuertz, Yvette Wilson, Emilio Cano, and Pablo Vargas. 2017. “Testing the Hypothesis of Low Genetic Diversity and Population Structure in Narrow Endemic Species: The Endangered Antirrhinum Charidemi (Plantaginaceae).” Botanical Journal of the Linnean Society. Linnean Society of London 183 (2): 260–70. https://doi.org/10.1093/botlinnean/bow002.
DOI: 10.5281/zenodo.17519660
title: Genotyping data (11 microsatellites, 93 AFLPs) in Antirrhinum charidemi, from Forrest et al 2017.

description: Genotying matrices of Antirrhinum charidemi sampled in 8 locations in southern Spain, and genotyped at 11 microsatellites (111 inidivuals) and 93 AFLP loci (90 individuals). The data analysis is published in Forrest et al 2017.

Forrest, Alan, Marcial Escudero, Myriam Heuertz, Yvette Wilson, Emilio Cano, and Pablo Vargas. 2017. “Testing the Hypothesis of Low Genetic Diversity and Population Structure in Narrow Endemic Species: The Endangered Antirrhinum Charidemi (Plantaginaceae).” Botanical Journal of the Linnean Society. Linnean Society of London 183 (2): 260–70. https://doi.org/10.1093/botlinnean/bow002.
DOI: 10.5281/zenodo.17519158
title: Data for "Observation of disorder-free localization using a (2+1)D lattice gauge theory on a quantum processor"

description: This dataset contains the experimental data for arXiv:2410.06557, as well as two notebooks showing how to read the data files and reproduce figures from the paper.



`1D` contains the data to reproduce Figure 1 and associated SM figures.

`2D` contains the data to reproduce Figure 3 and associated SM figures.

`Entropy` contains the data to reproduce Figure 4 and associated SM figures.


The `data.json` files in `1D` and `2D` contain dictionaries where the keys indicate the initial state, the observable, the degree of error mitigation.



names ending in `_raw` indicate no error mitigation.

names ending in `_rescaled` indicate all of: (1) readout mitigated, (2) postselected for the single-sector initial state, and (3) rescaled, where the rescaling factor is determined by the exponential fit to the `zero_trotter` data that is obtained from setting the Trotter step size to zero (see Fig S2 and the code in the notebook to reproduce it).

names ending in neither have error mitigaiton techniques (1) and (2) applied but not (3).


Arrays are indexed as `[time_idx, value_or_uncertainty_idx, site_idx]`. For the 1D ring, the sites are indexed according to their order in the ring. For the 2D grid, the sites are indexed according to the order given in `qubit_order.json`.
DOI: 10.5281/zenodo.17519159
title: Data for "Observation of disorder-free localization using a (2+1)D lattice gauge theory on a quantum processor"

description: This dataset contains the experimental data for arXiv:2410.06557, as well as two notebooks showing how to read the data files and reproduce figures from the paper.



`1D` contains the data to reproduce Figure 1 and associated SM figures.

`2D` contains the data to reproduce Figure 3 and associated SM figures.

`Entropy` contains the data to reproduce Figure 4 and associated SM figures.


The `data.json` files in `1D` and `2D` contain dictionaries where the keys indicate the initial state, the observable, the degree of error mitigation.



names ending in `_raw` indicate no error mitigation.

names ending in `_rescaled` indicate all of: (1) readout mitigated, (2) postselected for the single-sector initial state, and (3) rescaled, where the rescaling factor is determined by the exponential fit to the `zero_trotter` data that is obtained from setting the Trotter step size to zero (see Fig S2 and the code in the notebook to reproduce it).

names ending in neither have error mitigaiton techniques (1) and (2) applied but not (3).


Arrays are indexed as `[time_idx, value_or_uncertainty_idx, site_idx]`. For the 1D ring, the sites are indexed according to their order in the ring. For the 2D grid, the sites are indexed according to the order given in `qubit_order.json`.
DOI: 10.5281/zenodo.17466764
title: Dataset for "PartSDF: Part-Based Implicit Neural Representation for Composite 3D Shape Parametrization and Optimization"

description: This repository contains the data used for the work "PartSDF: Part-Based Implicit Neural Representation for Composite 3D Shape Parametrization and Optimization", as well as the checkpoints of the pre-trained models.

The data consists in watertight meshes, their decomposition into parts, the poses of each parts, and the train/test splits used in the main work. They consists in processed meshes from ShapeNet (for cars and chairs), using the PartNet decomposition, and mixers from HybridSDF. Note that the 3D samples, with their accompanying SDF values and part labels, are not included because of their large size.

The checkpoints contain the experimental directory of the pre-trained models for each category present in the data and main text with: the network weights, the latent vectors and poses of the training shapes, and the specification files. These are best used with the official codebase of the work, see below for the Abstract and structure of the present dataset.

Abstract

Accurate 3D shape representation is essential in engineering applications such as design, optimization, and simulation. In practice, engineering workflows require structured, part-based representations, as objects are inherently designed as assemblies of distinct components. However, most existing methods either model shapes holistically or decompose them without predefined part structures, limiting their applicability in real-world design tasks. We propose PartSDF, a supervised implicit representation framework that explicitly models composite shapes with independent, controllable parts while maintaining shape consistency. Thanks to its simple but innovative architecture, PartSDF outperforms both supervised and unsupervised baselines in reconstruction and generation tasks. We further demonstrate its effectiveness as a structured shape prior for engineering applications, enabling precise control over individual components while preserving overall coherence. Code available at https://github.com/cvlab-epfl/PartSDF.

Data Structure

The data for each category follows this file structure:

dataset/├── meshes/├── parts/│   ├── meshes/│   ├── parameters/         <- Pose parameters of the parts│   └── primitives/         <- Meshes of the parts primitives└── splits/                 <- Split files (each is a list of instance names)

Note that the 3D samples with SDF values and part labels are not included for memory constraints. Please refer to our code repository to generate them.

Checkpoint Structure

The checkpoint for each model follows this file structure:

dataset/├── latent/│   ├── latents_2000.pth    <- Training latents at epoch 2000│   └── poses.pth           <- Training poses├── log/│   └── history.pth         <- Training history├── model/│   └── model_2000.pth      <- Model weights at epoch 2000└── specs.json              <- Specification file for the experiment
DOI: 10.5281/zenodo.17466765
title: Dataset for "PartSDF: Part-Based Implicit Neural Representation for Composite 3D Shape Parametrization and Optimization"

description: This repository contains the data used for the work "PartSDF: Part-Based Implicit Neural Representation for Composite 3D Shape Parametrization and Optimization", as well as the checkpoints of the pre-trained models.

The data consists in watertight meshes, their decomposition into parts, the poses of each parts, and the train/test splits used in the main work. They consists in processed meshes from ShapeNet (for cars and chairs), using the PartNet decomposition, and mixers from HybridSDF. Note that the 3D samples, with their accompanying SDF values and part labels, are not included because of their large size.

The checkpoints contain the experimental directory of the pre-trained models for each category present in the data and main text with: the network weights, the latent vectors and poses of the training shapes, and the specification files. These are best used with the official codebase of the work, see below for the Abstract and structure of the present dataset.

Abstract

Accurate 3D shape representation is essential in engineering applications such as design, optimization, and simulation. In practice, engineering workflows require structured, part-based representations, as objects are inherently designed as assemblies of distinct components. However, most existing methods either model shapes holistically or decompose them without predefined part structures, limiting their applicability in real-world design tasks. We propose PartSDF, a supervised implicit representation framework that explicitly models composite shapes with independent, controllable parts while maintaining shape consistency. Thanks to its simple but innovative architecture, PartSDF outperforms both supervised and unsupervised baselines in reconstruction and generation tasks. We further demonstrate its effectiveness as a structured shape prior for engineering applications, enabling precise control over individual components while preserving overall coherence. Code available at https://github.com/cvlab-epfl/PartSDF.

Data Structure

The data for each category follows this file structure:

dataset/├── meshes/├── parts/│   ├── meshes/│   ├── parameters/         <- Pose parameters of the parts│   └── primitives/         <- Meshes of the parts primitives└── splits/                 <- Split files (each is a list of instance names)

Note that the 3D samples with SDF values and part labels are not included for memory constraints. Please refer to our code repository to generate them.

Checkpoint Structure

The checkpoint for each model follows this file structure:

dataset/├── latent/│   ├── latents_2000.pth    <- Training latents at epoch 2000│   └── poses.pth           <- Training poses├── log/│   └── history.pth         <- Training history├── model/│   └── model_2000.pth      <- Model weights at epoch 2000└── specs.json              <- Specification file for the experiment
DOI: 10.15468/dl.mkkpdj
title: Occurrence Download

description: A dataset containing 423806 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Fritillaria melananthera, Ononis cossoniana, Telekia speciosa, Mesembryanthemum archeri, Calamagrostis foliosa, Chaenostoma paniculatum, Mesembryanthemum vanrensburgii, Stephania abyssinica, Halenia brevicornis, Gyrostemon subnudus, Astridia alba, Thliphthisa saxicola, Dipterostemon capitatus, Coleus madagascariensis, Darwinia micropetala, Darwinia hypericifolia, Albuca suaveolens, Othonna eriocarpa, Almaleea capitata, Trichophorum cespitosum, Isotoma tridens, Albuca watermeyeri, Azorella prolifera, Rhynchosia precatoria, Rhynchosia bullata, Noccaea rotundifolia, Arrhenatherum pallens, Gentianella muelleriana, Noccaea cretica, Albuca barbata, Calobota spinescens, Noccaea tatianae, Taxodium distichum, Asparagus densiflorus, Diplotaxis catholica, Cochlospermum palmatifidum, Vanheerdea primosii, Hippocrepis nevadensis, Euryops linifolius, Tetrapora tenuiramea, Chylismia cardiophylla, Erythrostemon mexicanus, Echinochloa pyramidalis, Bystropogon plumosus, Vincetoxicum fuscatum, Pilosella pachypila, Operculina pinnatifida, Jasione maritima, Sclerochloa woronowii, Acanthopsis spathularis, Cochlospermum vitifolium, Tordylium elegans, Templetonia sulcata, Sonchus canariensis, Acourtia mexicana, Triflorensia cameronii, Ruschia schollii, Anacamptorchis bassoulsii, Sesleria italica, Anacamptorchis neogennarii, Harmonia doris-nilesiae, Ceratolimon feei, Ruschia victoris, Deinandra mohavensis, Harmonia stebbinsii, Saussurea lyrata, Sinclairia cervina, Conophytum devium, Corallorhiza trifida, Argyroderma octophyllum, Hieracium nouletii, Calytrix alpestris, Trachyspermum ammi, Hieracium vivantii, Hieracium cebennicola, Mauranthemum decipiens, Lotononis sparsiflora, Kohautia subverticillata, Facchinia rupestris, Gymnadenia hedrenii, Calytrix plumulosa, Gundelia microcephala, Satureja wiedemanniana, Salvia rosmarinus, Coprosma quadrifida, Descurainia californica, Pterostylis barringtonensis, Pseudognaphalium affine, Ipomoea biflora, Descurainia myriophylla, Pterostylis exserta, Leptosema tomentosum, Vulpiella stipoides, Gelasia villosa, Oligomeris dipetala, Centipeda cunninghamii, Schoenoplectus heterochaetus, Maytenus peduncularis, Prasophyllum brevilabre, Acantholimon karelinii)",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 423806 records from 1726 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014531-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.