cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10380403
title: SNR and RSSI from an urban LoRa Network

description: The dataset contains various SNR and RSSI reading from a LoRa Network in the city of Portland, Maine. The dataset consists in a single sheet file, where each row corresponds to a specific LoRa node. Note that: i) the first row corresponds to the LoRa Gateway; ii) each row contains information over the node ID, its coordinates, the packet frequency, bandwidth, , Transmission Power, Spreading Factor, Coding Rate, SNR and RSSI.
DOI: 10.5281/zenodo.10380402
title: SNR and RSSI from an urban LoRa Network

description: The dataset contains various SNR and RSSI reading from a LoRa Network in the city of Portland, Maine. The dataset consists in a single sheet file, where each row corresponds to a specific LoRa node. Note that: i) the first row corresponds to the LoRa Gateway; ii) each row contains information over the node ID, its coordinates, the packet frequency, bandwidth, , Transmission Power, Spreading Factor, Coding Rate, SNR and RSSI.
DOI: 10.17028/rd.lboro.14206868.v2
title: Influence of dwelling and household characteristics on summertime overheating in a mild climate in the 2050’s: statistical analyses

description: This supplementary information contains worksheets of statistical analyses that underpin the narrative and bar charts presented in the following paper by the above authors: Dwelling and household characteristics' influence on reported and measured summertime overheating: a glimpse of a mild climate in the 2050’s, published in Building and Environment in 2021. The analyses aim to identify the dwellings and household characteristics for which there is a significant difference in the prevalence of overheating in the living room or main bedroom.
DOI: 10.17028/rd.lboro.14206868.v1
title: Influence of dwelling and household characteristics on summertime overheating in a mild climate in the 2050’s: statistical analyses

description: This supplementary information contains worksheets of statistical analyses that underpin the narrative and bar charts presented in the following paper by the above authors: Dwelling and household characteristics' influence on reported and measured summertime overheating: a glimpse of a mild climate in the 2050’s, published in Building and Environment in 2021. The analyses aim to identify the dwellings and household characteristics for which there is a significant difference in the prevalence of overheating in the living room or main bedroom.
DOI: 10.25444/nhlbi.24807621
title: Primary Data Supporting "Asthmatics with High Serum Amyloid A have Pro-inflammatory HDL: Implications for Augmented Systemic and Airway Inflammation", Figures 2 - 8, E1 - E9, DOI: https://doi.org/10.1016/j.jaci.2023.11.917

description: <b>Rationale:</b> Serum amyloid A (SAA) is bound to high-density lipoproteins (HDL) in blood. Although SAA is increased in the blood of asthmatics, it is not known whether this modifies asthma severity.<b>Objective:</b> To define the clinical characteristics of asthmatics with high SAA levels and assess whether HDL from SAA-high asthmatics is pro-inflammatory.<b>Methods:</b> SAA levels in serum from asthmatic and non-asthmatic subjects were quantified by ELISA. HDL isolated from asthmatics with high SAA levels were used to stimulate human monocytes and were intravenously administered to BALB/c mice.<b>Results:</b><b> </b>A SAA level &gt; 108.8 mg/ml was defined as the threshold to identify 11% of an asthmatic cohort (n = 146) as being SAA-high. SAA-high asthmatics were characterized by increased serum C-reactive protein, IL-6, and TNF-a; older age; and an increased prevalence of obesity and severe asthma. HDL isolated from SAA-high asthmatics (SAA-high HDL) had an increased content of SAA as compared to HDL from SAA-low asthmatics and induced the secretion of IL-6, IL-1b and TNF-a from human monocytes via a FPR2/ATP/P2X7R axis. Intravenous administration to mice of SAA-high HDL, but not normal HDL, induced systemic inflammation and amplified allergen-induced neutrophilic airway inflammation and goblet cell metaplasia.<b>Conclusion:</b><b> </b>SAA-high asthmatics are characterized by systemic inflammation, older age, and an increased prevalence of obesity and severe asthma. HDL from SAA-high asthmatics is pro-inflammatory and, when intravenously administered to mice, induces systemic inflammation, and amplifies allergen-induced neutrophilic airway inflammation. This suggests that systemic inflammation induced by SAA-high HDL may augment disease severity in asthma.
DOI: 10.25444/nhlbi.24807621.v1
title: Primary Data Supporting "Asthmatics with High Serum Amyloid A have Pro-inflammatory HDL: Implications for Augmented Systemic and Airway Inflammation", Figures 2 - 8, E1 - E9, DOI: https://doi.org/10.1016/j.jaci.2023.11.917

description: <b>Rationale:</b> Serum amyloid A (SAA) is bound to high-density lipoproteins (HDL) in blood. Although SAA is increased in the blood of asthmatics, it is not known whether this modifies asthma severity.<b>Objective:</b> To define the clinical characteristics of asthmatics with high SAA levels and assess whether HDL from SAA-high asthmatics is pro-inflammatory.<b>Methods:</b> SAA levels in serum from asthmatic and non-asthmatic subjects were quantified by ELISA. HDL isolated from asthmatics with high SAA levels were used to stimulate human monocytes and were intravenously administered to BALB/c mice.<b>Results:</b><b> </b>A SAA level &gt; 108.8 mg/ml was defined as the threshold to identify 11% of an asthmatic cohort (n = 146) as being SAA-high. SAA-high asthmatics were characterized by increased serum C-reactive protein, IL-6, and TNF-a; older age; and an increased prevalence of obesity and severe asthma. HDL isolated from SAA-high asthmatics (SAA-high HDL) had an increased content of SAA as compared to HDL from SAA-low asthmatics and induced the secretion of IL-6, IL-1b and TNF-a from human monocytes via a FPR2/ATP/P2X7R axis. Intravenous administration to mice of SAA-high HDL, but not normal HDL, induced systemic inflammation and amplified allergen-induced neutrophilic airway inflammation and goblet cell metaplasia.<b>Conclusion:</b><b> </b>SAA-high asthmatics are characterized by systemic inflammation, older age, and an increased prevalence of obesity and severe asthma. HDL from SAA-high asthmatics is pro-inflammatory and, when intravenously administered to mice, induces systemic inflammation, and amplifies allergen-induced neutrophilic airway inflammation. This suggests that systemic inflammation induced by SAA-high HDL may augment disease severity in asthma.
DOI: 10.5281/zenodo.10377396
title: Processed data for Yost*, Zhao*, et al.
DOI: 10.5281/zenodo.10377397
title: Processed data for Yost*, Zhao*, et al.
DOI: 10.25345/c55d8nr4w
title: MassIVE MSV000093669 - A protein-proximity screen reveals that Ebola virus co-opts the mRNA decapping complex through the scaffold protein EDC4
title: Understanding the molecular interactions of host cells with Ebola virus (EBOV) is integral for further therapeutic development of antivirals. We performed a proximity-dependent protein interaction screen for six of seven EBOV proteins to characterize the EBOV-host interactome. Using network analysis, putative EBOV interacting proteins were mapped to a human protein interactome. We overlayed viral protein interactions onto the host network. Within this map, several known EBOV-host protein interactions were identified, as well as several cell processes, such as RNA processing, previously implicated in EBOV replication. Furthermore, this interactome revealed novel interactions between EBOV proteins and host proteins arranged in functional complexes. As proof of this concept, we characterized the interaction between EBOV VP35 and the mRNA decapping complex, which regulates mRNA turnover in host cells. Our protein-protein interaction data demonstrate that VP35 engages multiple components of this complex by binding binds the scaffold protein EDC4. Inhibiting expression of mRNA decapping complex components EDC4, EDC3, or DCP2 inhibited viral replication by reducing early viral RNA synthesis. Our approach examining EBOV-host protein interactions in conjunction with network analysis reveals how EBOV interacts with entire cellular machines as opposed to singular cell proteins to promote its replication.
DOI: 10.5287/ora-r1dqbnpab
title: Volcanic Ash Density

description: Unsieved ash density measurements from 23 unsieved raw ash samples originating from 15 volcanoes, including mass of sample measured with a digital scale and volume measured with a nitrogen gas pycnometer. Data measured in July-August 2022.
DOI: 10.25573/data.10042547.v25
title: Agua Salud, Celestino Tower_Air Pressure

description: Agua Salud Celestino Tower. <br>Location 9.21142N, 79.72656W<br>Air Pressure, Interval average<br><br>Established in 2015 and is located at the eastern edge of the Soberania Nation Park, in an area of pastures and forest patches. The tower is 40ft (12.2m) tall
DOI: 10.25421/yorksj.24757158
title: National Parent Survey Anonymised data

description: This data is from a national survey asking parents about their children's experiences of school toilets. The survey was carried out in 2022 and was aimed at parents in the UK.
DOI: 10.25421/yorksj.24757158.v1
title: National Parent Survey Anonymised data

description: This data is from a national survey asking parents about their children's experiences of school toilets. The survey was carried out in 2022 and was aimed at parents in the UK.
DOI: 10.6084/m9.figshare.24808251
title: Data

description: The data describes anti-bacterial and anti-inflammatory effects of an extract of a traditional Chinese medicine in vitro and in vivo.
DOI: 10.6084/m9.figshare.24808251.v1
title: Data

description: The data describes anti-bacterial and anti-inflammatory effects of an extract of a traditional Chinese medicine in vitro and in vivo.
DOI: 10.5258/soton/d2663
title: Dataset to support the article 'Ti3C2 MXene as Additive for Low-Cost Textile Supercapacitors with Enhanced Electrical Performance'

description: This dataset supports Figures 4 and 5 of the article "Ti3C2 MXene as Additive for Low-Cost Textile Supercapacitors with Enhanced Electrical Performance" published in Advanced Science News (the rest of data is available up on request)
DOI: 10.6084/m9.figshare.24799911.v2
title: data and R code: A successional shift enhances stability in ant symbiont communities

description: data and R code to conduct analyses of https://doi.org/10.1101/2023.11.22.568218
DOI: 10.5281/zenodo.10380151
title: Data Repository for Nanoscale magnetism and magnetic phase transitions in atomically thin CrSBr

description: Data repository for: Nanoscale magnetism and magnetic phase transitions in atomically thin CrSBr

This data repository contains the raw data as measured on the experimental setup, simulations, analysis scripts and plotting scripts to reproduce the plots shown in the manuscript’s figures.

Code for plotting: Matlab R2021bThe raw data is either stored as MatLab structs (.mat) or accessible through the .json files.

See ReadMe.txt for more information.
DOI: 10.5281/zenodo.10380152
title: Data Repository for Nanoscale magnetism and magnetic phase transitions in atomically thin CrSBr

description: Data repository for: Nanoscale magnetism and magnetic phase transitions in atomically thin CrSBr

This data repository contains the raw data as measured on the experimental setup, simulations, analysis scripts and plotting scripts to reproduce the plots shown in the manuscript’s figures.

Code for plotting: Matlab R2021bThe raw data is either stored as MatLab structs (.mat) or accessible through the .json files.

See ReadMe.txt for more information.
DOI: 10.5281/zenodo.10204074
title: Local grafting heterogeneities rule water intrusion and extrusion in nanopores

description: Datasets and scripts used to generate data.
DOI: 10.5519/qd.hfijwm7k
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1404 records)
DOI: 10.6084/m9.figshare.24808338
title: Data on consumer view on organic animal farming form 2022

description: A mainly positive attitude of consumers towards organic animal husbandry with its higher keeping standards compared to the legal regulations is evident. However, less is known about consumers’ detailed expectations of organic husbandry and in particular their attitude and trust along the value chain of organic animal products. Which consumers trust the most, and how do they want to be informed about organic animal husbandry? Where along the chain are trust deficits that should be addressed in the future to support sustainable food consumption with high animal welfare standards? To answer these important questions a survey was conducted among 729 German meat consumers. Using a cluster analysis, various consumer groups were identified based on their trust levels. Further, these groups were characterized regarding their general attitude, their information behavior, their evaluation of current media reporting, and their preferred way to be informed (emotional/rational) about organic animal products. The results revealed three clusters that clearly differ in their trust level of organic husbandry. Respondents assigned to the first cluster are committed organic consumers with high trust and the most positive attitude. The second cluster, combines respondents who are generally open to organic meat consumption and showing the second highest trust level and positive attitude towards organic. They show a slight favor for a more rational presentation of information. The third cluster is the smallest and can be described as the skeptics with a low interest in organic. The results indicate a general moderate to high trust level along the value chain of organic animal products, with the highest trust in organic retailers and farmers and the least trust in processing and conventional retailers. These are important insights for the organic sector in order to improve consumer trust and therewith increase the market share of organic meat products.
DOI: 10.5281/zenodo.4556025
title: Microbial-ecology-of-the-transplanted-human-lung: version 1.2

description: GitHub repository linked: sudu87/Microbial-ecology-of-the-transplanted-human-lung. <br> This contains the code, bacterial culture collection and README.md. Linked to publication: https://doi.org/10.1101/2020.05.21.106211<br> Description of datasets given below: <strong>All_BAL_samples_raw_fastqc:</strong> FastQC reports for raw sequencing data after merging all samples. <strong>All_BAL_samples_processed_fastqc:</strong> FastQC reports for trimmed and curated merged data. <strong>Supplementary_Data_1: </strong>Table of 16S rRNA amplicon sequencing information, such as OTU relative abundance and taxonomy, by sample, without negative controls. <strong>Supplementary_Data_2: </strong>Table of 16S rRNA amplicon sequencing information, such as OTU relative abundance and taxonomy, for each negative control. <strong>Supplementary_Data_3: </strong>Detailed table showing frequency of all OTUs detected across the 234 BALF samples in terms of their abundance and prevalence. <strong>Supplementary_Data_4: </strong>List of Lung microbiota culture collection (LuMiCol) isolates with detailed information about sample number, culture conditions, taxonomy. This is a non-curated list containing about 300 isolates of which 215 were used for analysis. <strong>Supplementary_Data_5: </strong>OTU-isolate match summary listing the isolates that match OTUs in their 16S rRNA gene sequence, and information about the number of representative isolates in LuMiCol, with at least one representative isolate name, prevalence, and preference in terms of oxygen condition and media. <strong>Supplementary_Data_6: </strong>Detailed input and output files from unsupervised machine learning approach used by Genocrunch to determine Partition around medoids (PAMs) i.e. pneumotypes. The zip file includes parameters files: json and text files and Silhouette plots. <strong>Supplementary_Data_7: </strong>Detailed metadata table associated with all patients and samples.
description: {"references": ["A prevalent and culturable microbiota links ecological balance to clinical stability of the human lung after transplantation Sudip Das, Eric Bernasconi, Angela Koutsokera, Daniel-Adrien Wurlod, Vishwachi Tripathi, Germ\u00e1n Bonilla-Rosso, John-David Aubert, Marie-France Derkenne, Louis Mercier, C\u00e9line Pattaroni, Alexis Rapin, Christophe von Garnier, Benjamin J. Marsland, Philipp Engel, Laurent P. Nicod bioRxiv 2020.05.21.106211; doi: https://doi.org/10.1101/2020.05.21.106211"]}
DOI: 10.5281/zenodo.4555846
title: Microbial-ecology-of-the-transplanted-human-lung

description: GitHub repository linked: sudu87/Microbial-ecology-of-the-transplanted-human-lung. 
This contains the code, bacterial culture collection and README.md.


Linked to publication: https://doi.org/10.1038/s41467-021-22344-4
Description of datasets given below:



	
All_BAL_samples_raw_fastqc: FastQC reports for raw sequencing data after merging all samples.
	
All_BAL_samples_processed_fastqc: FastQC reports for trimmed and curated merged data.
	
Supplementary_Data_1: Table of 16S rRNA amplicon sequencing information, such as OTU relative abundance and taxonomy, by sample, without negative controls.
	
Supplementary_Data_2: Table of 16S rRNA amplicon sequencing information, such as OTU relative abundance and taxonomy, for each negative control.
	
Supplementary_Data_3: Detailed table showing frequency of all OTUs detected across the 234 BALF samples in terms of their abundance and prevalence.
	
Supplementary_Data_4: List of Lung microbiota culture collection (LuMiCol) isolates with detailed information about sample number, culture conditions, taxonomy. This is a non-curated list containing about 300 isolates of which 215 were used for analysis. 
	
Supplementary_Data_5: OTU-isolate match summary listing the isolates that match OTUs in their 16S rRNA gene sequence, and information about the number of representative isolates in LuMiCol, with at least one representative isolate name, prevalence, and preference in terms of oxygen condition and media.
	
Supplementary_Data_6: Detailed input and output files from unsupervised machine learning approach used by Genocrunch to determine Partition around medoids (PAMs) i.e. pneumotypes. The zip file includes parameters files: json and text files and Silhouette plots.
	
Supplementary_Data_7: Detailed metadata table associated with all patients and samples.
DOI: 10.5281/zenodo.4633107
title: Microbial-ecology-of-the-transplanted-human-lung

description: GitHub repository linked: sudu87/Microbial-ecology-of-the-transplanted-human-lung. 
This contains the code, bacterial culture collection and README.md.


Linked to publication: https://doi.org/10.1038/s41467-021-22344-4
Description of datasets given below:



	
All_BAL_samples_raw_fastqc: FastQC reports for raw sequencing data after merging all samples.
	
All_BAL_samples_processed_fastqc: FastQC reports for trimmed and curated merged data.
	
Supplementary_Data_1: Table of 16S rRNA amplicon sequencing information, such as OTU relative abundance and taxonomy, by sample, without negative controls.
	
Supplementary_Data_2: Table of 16S rRNA amplicon sequencing information, such as OTU relative abundance and taxonomy, for each negative control.
	
Supplementary_Data_3: Detailed table showing frequency of all OTUs detected across the 234 BALF samples in terms of their abundance and prevalence.
	
Supplementary_Data_4: List of Lung microbiota culture collection (LuMiCol) isolates with detailed information about sample number, culture conditions, taxonomy. This is a non-curated list containing about 300 isolates of which 215 were used for analysis. 
	
Supplementary_Data_5: OTU-isolate match summary listing the isolates that match OTUs in their 16S rRNA gene sequence, and information about the number of representative isolates in LuMiCol, with at least one representative isolate name, prevalence, and preference in terms of oxygen condition and media.
	
Supplementary_Data_6: Detailed input and output files from unsupervised machine learning approach used by Genocrunch to determine Partition around medoids (PAMs) i.e. pneumotypes. The zip file includes parameters files: json and text files and Silhouette plots.
	
Supplementary_Data_7: Detailed metadata table associated with all patients and samples.
DOI: 10.17630/3b62c3ea-a83f-446e-94d5-f9ef70382c38
title: Relatedness decreases and reciprocity increases cooperation in Norway rats (dataset)
DOI: 10.17630/840d78c9-d37d-48bd-b707-2a57a3965f38
title: Reciprocal trading of two different commodities in Norway rats (dataset)
DOI: 10.17630/8a9af431-3588-4de7-a7fc-2af214eb36b1
title: Norway rats (Rattus norvegicus) communicate need, which elicits donation of food (dataset)
DOI: 10.17630/ad43195b-ae3e-4c78-99de-a74593758fda
title: The transfer of alternative tasks in reciprocal cooperation (dataset)
DOI: 10.6084/m9.figshare.24808383
title: Multiple microbial guilds mediate soil methane cycling along a wetland salinity gradient - Supplemental Tables

description: Estuarine wetlands harbor considerable carbon stocks, but rising sea levels could affect their ability to sequester soil carbon as well as their potential to emit methane (CH<sub>4</sub>). While sulfate loading from seawater intrusion may reduce CH<sub>4</sub>production due to the higher energy yield of microbial sulfate reduction, existing studies suggest other factors are likely at play. Our study of 11 wetland complexes spanning a natural salinity and productivity gradient across the San Francisco Bay and Delta found that while CH<sub>4</sub>fluxes generally declined with salinity, they were highest in oligohaline wetlands (ca. 3 ppt salinity). Methanogens and methanogenesis genes were weakly correlated with CH<sub>4</sub>fluxes, but alone did not explain the highest rates observed. Taxonomic and functional gene data suggested that other microbial guilds that influence carbon and nitrogen cycling need to be accounted for to better predict CH<sub>4</sub>fluxes at landscape scales. Higher methane production occurring near the freshwater boundary with slight salinization (and sulfate incursion) might result from increased sulfate-reducing fermenter and syntrophic populations, which can produce substrates used by methanogens. Moreover, higher salinities can solubilize ionically bound ammonium abundant in the lower salinity wetland soils examined here, which could inhibit methanotrophs and potentially contribute to greater CH<sub>4</sub> fluxes observed in oligohaline sediments.
DOI: 10.5281/zenodo.10380814
title: Clinical data of patients and values of antibodies in the IgM, IgA and IgG classess against Mycoplasma pneumoniae
title: Dane kliniczne pacjentów i miana przeciwciał w klasach IgM, IgA i IgG przeciw Mycoplasma pneumoniae

description: Data on Mycoplasma pneumoniae infections during last years are very limited. In this manuscript, we presented the assessment of the seroprevalence of antibodies against Mycoplasma pneumoniae in the numerous group of patients, as well as clinical aspects of the differential diagnostics of respiratory tract infections.
DOI: 10.5281/zenodo.10380815
title: Clinical data of patients and values of antibodies in the IgM, IgA and IgG classess against Mycoplasma pneumoniae
title: Dane kliniczne pacjentów i miana przeciwciał w klasach IgM, IgA i IgG przeciw Mycoplasma pneumoniae

description: Data on Mycoplasma pneumoniae infections during last years are very limited. In this manuscript, we presented the assessment of the seroprevalence of antibodies against Mycoplasma pneumoniae in the numerous group of patients, as well as clinical aspects of the differential diagnostics of respiratory tract infections.