cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6449738
title: Early Detection in Macular Disease - the handheld radial shape discrimination task and neovasular AMD

description: We investigated the performance of the handheld radial shape discrimination (hRSD) test in detecting the development of neovascular AMD (nAMD). Patients diagnosed with unilateral nAMD, with no nAMD in the other eye (the study eye, SE), completed the hRSD test on consecutive, routine clinic visits up to a maximum of 12, or until they were diagnosed with nAMD in the SE. Data (hRSD threshold, visual acuity, dates of tests, and demographics) from 19 “converters” who developed nAMD in the SE and 160 non-converters is available on these worksheets.
DOI: 10.6084/m9.figshare.6449738.v1
title: Early Detection in Macular Disease - the handheld radial shape discrimination task and neovasular AMD

description: We investigated the performance of the handheld radial shape discrimination (hRSD) test in detecting the development of neovascular AMD (nAMD). Patients diagnosed with unilateral nAMD, with no nAMD in the other eye (the study eye, SE), completed the hRSD test on consecutive, routine clinic visits up to a maximum of 12, or until they were diagnosed with nAMD in the SE. Data (hRSD threshold, visual acuity, dates of tests, and demographics) from 19 “converters” who developed nAMD in the SE and 160 non-converters is available on these worksheets.
DOI: 10.6084/m9.figshare.6449726
title: Genotyping by Sequencing (GBS) in mapping of drought tolerance traits and functional characterization of key genes mined within the QTL regions in upland cotton

description: Figure S1: The physical map coverage of the cotton genome. (I): Physical map of <i>G. hirsutum</i> coverage on the tetraploid genome of <i>G. hirsutum</i>, (II): Physical map coverage of the A_diploid cotton genome of <i>G. arboreum</i> and (III): Physical map coverage of the D_diploid cotton of the <i>G. raimondii</i> Figure S2: Consistent QTLs mapped onto their specific chromosomes Figure S3: Clustered QTLs identified in chromosome A01 for physio-morphological drought related traits. Bars and lines on the upper side of the linkage groups show the QTL likelihood intervals. Map distances in centiMorgan (cM) are indicated on the lower side of the linkage groups. Table S1: The BIL seedlings performance under drought and controlled conditions in two different environments Table S2: Phenotypic correlation analysis Table S3: Genotypic correlation coefficient among different component traits under drought stress Table S4: Genome co-ordinates of all the SNPs with physical positions (bp), genetic position (cM) and the alleles Table S5: Characteristics of the high-density genetic map; Table S6: Consistent QTLs for physio-morphological drought related traits detected in the semi wild BIL population Table S7: Mined genes within 3 major QTl’s cluster regions for physiological traits related to drought stress in cotton Table S8: GO functional annotation of genes mined within the three major QTL cluster regions Table S9: miRNA targeting the mined genes within the three major QTL cluster Table S10: List of primers used for the qRT-PCR validation for the mined genes within the major QTL cluster regions Supplementary files: Newick structure and protein sequences used in phylogenetic tree analysis
DOI: 10.6084/m9.figshare.6449726.v1
title: Genotyping by Sequencing (GBS) in mapping of drought tolerance traits and functional characterization of key genes mined within the QTL regions in upland cotton

description: Figure S1: The physical map coverage of the cotton genome. (I): Physical map of <i>G. hirsutum</i> coverage on the tetraploid genome of <i>G. hirsutum</i>, (II): Physical map coverage of the A_diploid cotton genome of <i>G. arboreum</i> and (III): Physical map coverage of the D_diploid cotton of the <i>G. raimondii</i> Figure S2: Consistent QTLs mapped onto their specific chromosomes Figure S3: Clustered QTLs identified in chromosome A01 for physio-morphological drought related traits. Bars and lines on the upper side of the linkage groups show the QTL likelihood intervals. Map distances in centiMorgan (cM) are indicated on the lower side of the linkage groups. Table S1: The BIL seedlings performance under drought and controlled conditions in two different environments Table S2: Phenotypic correlation analysis Table S3: Genotypic correlation coefficient among different component traits under drought stress Table S4: Genome co-ordinates of all the SNPs with physical positions (bp), genetic position (cM) and the alleles Table S5: Characteristics of the high-density genetic map; Table S6: Consistent QTLs for physio-morphological drought related traits detected in the semi wild BIL population Table S7: Mined genes within 3 major QTl’s cluster regions for physiological traits related to drought stress in cotton Table S8: GO functional annotation of genes mined within the three major QTL cluster regions Table S9: miRNA targeting the mined genes within the three major QTL cluster Table S10: List of primers used for the qRT-PCR validation for the mined genes within the major QTL cluster regions Supplementary files: Newick structure and protein sequences used in phylogenetic tree analysis
DOI: 10.6084/m9.figshare.6449705
title: Supplementary Material for: Multiple Free Internal Limiting Membrane Flap Insertion in the Treatment of Macular Hole-Associated Retinal Detachment in High Myopia

description: <b><i>Purpose:</i></b> The aim of this paper was to evaluate the efficacy of multiple free internal limiting membrane (ILM) flap insertion in the management of macular hole-associated retinal detachment in high myopia. <b><i>Procedures:</i></b> Eyes receiving operation for macular hole-associated retinal detachment were retrospectively recruited. Those in the study group received ILM peeling and multiple free ILM flap insertion, while those in the control group received ILM peeling only. Postoperative anatomical outcomes and best-corrected visual acuity were compared between the 2 groups. <b><i>Results:</i></b> Twenty-seven eyes of 27 patients were recruited in this study (13 in the study group, 14 in the control group). After the operation, the retina was reattached in all cases in both groups. The macular hole closure rate was 100% in the study group but only 42.9% in the control group (adjusted <i>p</i> &lt; 0.001). The eyes in the study group had better visual improvement (logMAR –0.58 ± 0.43) than those in the control group (logMAR –0.31 ± 0.50) with borderline significance (adjusted <i>p</i> = 0.078). <b><i>Conclusions:</i></b> For macular hole-associated retinal detachment in highly myopic eyes, the multiple free ILM flap insertion technique offers an effective way to close macular holes. Whether this result also means better visual outcome remains to be seen.
DOI: 10.6084/m9.figshare.6449705.v1
title: Supplementary Material for: Multiple Free Internal Limiting Membrane Flap Insertion in the Treatment of Macular Hole-Associated Retinal Detachment in High Myopia

description: <b><i>Purpose:</i></b> The aim of this paper was to evaluate the efficacy of multiple free internal limiting membrane (ILM) flap insertion in the management of macular hole-associated retinal detachment in high myopia. <b><i>Procedures:</i></b> Eyes receiving operation for macular hole-associated retinal detachment were retrospectively recruited. Those in the study group received ILM peeling and multiple free ILM flap insertion, while those in the control group received ILM peeling only. Postoperative anatomical outcomes and best-corrected visual acuity were compared between the 2 groups. <b><i>Results:</i></b> Twenty-seven eyes of 27 patients were recruited in this study (13 in the study group, 14 in the control group). After the operation, the retina was reattached in all cases in both groups. The macular hole closure rate was 100% in the study group but only 42.9% in the control group (adjusted <i>p</i> &lt; 0.001). The eyes in the study group had better visual improvement (logMAR –0.58 ± 0.43) than those in the control group (logMAR –0.31 ± 0.50) with borderline significance (adjusted <i>p</i> = 0.078). <b><i>Conclusions:</i></b> For macular hole-associated retinal detachment in highly myopic eyes, the multiple free ILM flap insertion technique offers an effective way to close macular holes. Whether this result also means better visual outcome remains to be seen.
DOI: 10.6084/m9.figshare.6449687
title: Supplementary Material for: The Role of Retinal Vascular Density as a Screening Tool for Ageing and Stroke

description: <b><i>Objectives:</i></b> To measure the density of retinal vessels from digitized fundus photographs in patients with recent stroke and age-matched controls. To investigate whether the parameter retinal vascular density (RVD) served as a quantitative marker for cerebrovascular events. <b><i>Methods:</i></b> Digitized fundus photographs of <i>n</i> = 158 subjects with stroke or transient ischemic attack within 1 year at the time of examination and <i>n</i> = 1,250 age-matched controls without any remarkable medical history were examined. Sex, hypertension, and diabetes were considered to be cofactors. Measurement of RVD was performed with a computer-aided image-analyzing program by segmenting automatically all visible retinal vessels and measuring areas of vessels in distinct circles around the optic disk. <b><i>Results:</i></b> In controls RVD dwindles with increasing distance from the optic disk. RVD decreased significantly with age (<i>p</i> = 0.000). Stroke patients showed significantly lower values of RVD of –15% in comparison to age-matched controls. In old subjects, stroke in combination with hypertension is associated with a significant decreased RVD, and in middle-aged subjects diabetes and stroke are associated with a significant decreased RVD (<i>p</i> = 0.01). <b><i>Conclusion:</i></b> Age and stroke are significant risk factors for decreased RVD. Diabetes and arterial hypertension are additional significant risk factors in patients with stroke with respect to RVD.
DOI: 10.6084/m9.figshare.6449678
title: Nonlinear coupled dynamics of planetary rover mast mechanism considering geometric non-linearity and laminated structure characteristics

description: The nonlinear dynamic response of the end of the planetary rover mast with laminated composite materials undergoing attitude adjustment motion, including displacement, velocity and acceleration data.
DOI: 10.6084/m9.figshare.6449678.v1
title: Nonlinear coupled dynamics of planetary rover mast mechanism considering geometric non-linearity and laminated structure characteristics

description: The nonlinear dynamic response of the end of the planetary rover mast with laminated composite materials undergoing attitude adjustment motion, including displacement, velocity and acceleration data.
DOI: 10.6084/m9.figshare.6449675
title: Supplementary Material for: The Oral Provocation Test for Raw Egg in Patients with Hen Egg Allergy

description: <b><i>Background:</i></b> Many researchers have made efforts to develop diagnostic tools for predicting the outcome of oral food challenges (OFCs). The aim of this study was to assess the diagnostic value of the skin prick test (SPT) and blood-specific IgE concentrations based on the outcome of the OFCs for heated and raw hen egg. <b><i>Methods:</i></b> This study included 103 children with suspected hen egg allergy (HEA; median age 23 months, range 10–155; 72 boys, 31 girls). Forty-three patients were diagnosed with HEA by OFC. Of 60 patients who tolerated heated egg white (HEW), 22 underwent the OFC for raw hen egg and 7 developed adverse reactions after ingesting raw egg. Their wheal diameters and specific IgE levels for egg white and ovomucoid were determined. <b><i>Results:</i></b> Wheal diameters as well as blood-specific IgE levels for egg white and ovomucoid were significantly larger in children with positive OFC results for HEW than in those with negative results. However, there were no significant differences between the positive and negative test results for raw hen egg white (REW) in wheal diameter or blood-specific IgE levels. <b><i>Conclusions:</i></b> The SPT and blood-specific IgE can be used to diagnose HEA. However, the provocation test for REW in children without HEW allergy is important because the values of SPT and specific IgE were not significantly different between children with and without raw egg allergy.
DOI: 10.6084/m9.figshare.6449666
title: Table S2: Detrital muscovite single crystal <sup>40</sup>Ar/<sup>39</sup>Ar ages. Insights into the evolution of the Hindu Kush–Kohistan–Karakoram from modern river sand detrital geo- and thermochronological studies

description: Table S2: Detrital muscovite single crystal <sup>40</sup>Ar/<sup>39</sup>Ar ages.
DOI: 10.6084/m9.figshare.6449666.v1
title: Table S2: Detrital muscovite single crystal <sup>40</sup>Ar/<sup>39</sup>Ar ages. Insights into the evolution of the Hindu Kush–Kohistan–Karakoram from modern river sand detrital geo- and thermochronological studies

description: Table S2: Detrital muscovite single crystal <sup>40</sup>Ar/<sup>39</sup>Ar ages.
DOI: 10.6084/m9.figshare.6449663
title: Table S3. Modeling results. Insights into the evolution of the Hindu Kush–Kohistan–Karakoram from modern river sand detrital geo- and thermochronological studies

description: Table S3. Modeling results using Avdeev's method (Avdeev et al., 2011).
DOI: 10.6084/m9.figshare.6449663.v1
title: Table S3. Modeling results. Insights into the evolution of the Hindu Kush–Kohistan–Karakoram from modern river sand detrital geo- and thermochronological studies

description: Table S3. Modeling results using Avdeev's method (Avdeev et al., 2011).
DOI: 10.6084/m9.figshare.6449660
title: Table S1: Detrital zircon U–Pb ages. Insights into the evolution of the Hindu Kush–Kohistan–Karakoram from modern river sand detrital geo- and thermochronological studies

description: Table S1: Detrital zircon U–Pb ages.
DOI: 10.6084/m9.figshare.6449660.v1
title: Table S1: Detrital zircon U–Pb ages. Insights into the evolution of the Hindu Kush–Kohistan–Karakoram from modern river sand detrital geo- and thermochronological studies

description: Table S1: Detrital zircon U–Pb ages.
DOI: 10.6084/m9.figshare.6449648.v2
title: ShEx and SHACL compared

description: ShEx and SHACL compared
DOI: 10.6084/m9.figshare.6449645.v2
title: SHACL by example

description: SHACL by example
DOI: 10.6084/m9.figshare.6449597
title: surv.csv

description: Survival analysis<br>
DOI: 10.6084/m9.figshare.6449597.v1
title: surv.csv

description: Survival analysis<br>
DOI: 10.6084/m9.figshare.6449582
title: How to Catch a Small Beetle: Top Tips for Visually Screening Honey Bee Colonies for Small Hive Beetles

description: How to Catch a Small Beetle: Top Tips for Visually Screening Honey Bee Colonies for Small Hive Beetles
DOI: 10.6084/m9.figshare.6449582.v1
title: How to Catch a Small Beetle: Top Tips for Visually Screening Honey Bee Colonies for Small Hive Beetles

description: How to Catch a Small Beetle: Top Tips for Visually Screening Honey Bee Colonies for Small Hive Beetles
DOI: 10.6084/m9.figshare.6449579
title: Data for "Reproductive mode, stem cells and regeneration in a freshwater cnidarian with post-reproductive senescence"

description: This is the dataset containing head regeneration scores and cell composition counts of Hydra oligactis for the article "Reprodcutive mode, stem cells and regeneration in a freshwater cnidarian with post-reproductive senescence" by Sebestyén et al. (2018)<br>
DOI: 10.6084/m9.figshare.6449576
title: Duplicated genomic regions

description: Description of the genomic regions that present duplicated genes and no proper read support.
DOI: 10.6084/m9.figshare.6449573
title: Transcriptomic datasets

description: Description of the transcriptomic datasets (illumina) and the corresponding de novo assembly and alignments of RNA-Seq contigs.
DOI: 10.6084/m9.figshare.6449573.v1
title: Transcriptomic datasets

description: Description of the transcriptomic datasets (illumina) and the corresponding de novo assembly and alignments of RNA-Seq contigs.
DOI: 10.6084/m9.figshare.6449570
title: Genomic datasets

description: Description of the genomic datasets (nanopore and illumina).
DOI: 10.6084/m9.figshare.6449525
title: Gut content data

description: Raw data for Progress in Oceanography submission. Grigor et al. "Non-carnivorous feeding in Arctic chaetognaths".<br>Chaetognath gut content presence and colour data.
DOI: 10.6084/m9.figshare.6449516
title: Stable isotope data

description: Raw data for Progress in Oceanography submission. Grigor et al. "Non-carnivorous feeding in Arctic chaetognaths".Chaetognath stable isotope data.
DOI: 10.6084/m9.figshare.6449516.v1
title: Stable isotope data

description: Raw data for Progress in Oceanography submission. Grigor et al. "Non-carnivorous feeding in Arctic chaetognaths".Chaetognath stable isotope data.
DOI: 10.6084/m9.figshare.6449336
title: Additional file 3: of SINC-seq: correlation of transient gene expressions between nucleus and cytoplasm reflects single-cell physiology

description: Table S1. Quality control of SINC-seq samples. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.6449336.v1
title: Additional file 3: of SINC-seq: correlation of transient gene expressions between nucleus and cytoplasm reflects single-cell physiology

description: Table S1. Quality control of SINC-seq samples. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.6449300
title: Additional file 6: of Harnessing single-cell genomics to improve the physiological fidelity of organoid-derived cell types

description: Table S4. Complete list of DAVID enrichments. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.6449300.v1
title: Additional file 6: of Harnessing single-cell genomics to improve the physiological fidelity of organoid-derived cell types

description: Table S4. Complete list of DAVID enrichments. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.6449288
title: Additional file 5: of Harnessing single-cell genomics to improve the physiological fidelity of organoid-derived cell types

description: Table S3. Detected and quantified in vitro Proteome. (XLSX 919 kb)
DOI: 10.6084/m9.figshare.6449288.v1
title: Additional file 5: of Harnessing single-cell genomics to improve the physiological fidelity of organoid-derived cell types

description: Table S3. Detected and quantified in vitro Proteome. (XLSX 919 kb)
DOI: 10.6084/m9.figshare.6449246
title: Additional file 2: of Harnessing single-cell genomics to improve the physiological fidelity of organoid-derived cell types

description: Table S2. Reference gene lists used in single-cell analyses. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.6449246.v1
title: Additional file 2: of Harnessing single-cell genomics to improve the physiological fidelity of organoid-derived cell types

description: Table S2. Reference gene lists used in single-cell analyses. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.6449240
title: Additional file 1: of Prevalence and factors associated with type 2 diabetes mellitus and hypertension among the hill tribe elderly populations in northern Thailand

description: Hill tirb Elderly Data. (XLSX 545 kb)
DOI: 10.6084/m9.figshare.6449240.v1
title: Additional file 1: of Prevalence and factors associated with type 2 diabetes mellitus and hypertension among the hill tribe elderly populations in northern Thailand

description: Hill tirb Elderly Data. (XLSX 545 kb)
DOI: 10.6084/m9.figshare.6449231
title: Additional file 1: of Harnessing single-cell genomics to improve the physiological fidelity of organoid-derived cell types

description: Table S1. Derived gene list of the top defining genes from in vivo ileal small intestine PCs and EECs captured on the Seq-Well platform. (XLSX 355 kb)
DOI: 10.6084/m9.figshare.6449231.v1
title: Additional file 1: of Harnessing single-cell genomics to improve the physiological fidelity of organoid-derived cell types

description: Table S1. Derived gene list of the top defining genes from in vivo ileal small intestine PCs and EECs captured on the Seq-Well platform. (XLSX 355 kb)
DOI: 10.6084/m9.figshare.6449216
title: Additional file 9: of MICMIC: identification of DNA methylation of distal regulatory regions with causal effects on tumorigenesis

description: Table S8. Data source of histone marks and DNase I. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6449216.v1
title: Additional file 9: of MICMIC: identification of DNA methylation of distal regulatory regions with causal effects on tumorigenesis

description: Table S8. Data source of histone marks and DNase I. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6449204
title: Additional file 8: of MICMIC: identification of DNA methylation of distal regulatory regions with causal effects on tumorigenesis

description: Table S7. Cosmic non-coding variations neighboring LIHC DRE. (XLSX 187Â kb)
DOI: 10.6084/m9.figshare.6449204.v1
title: Additional file 8: of MICMIC: identification of DNA methylation of distal regulatory regions with causal effects on tumorigenesis

description: Table S7. Cosmic non-coding variations neighboring LIHC DRE. (XLSX 187Â kb)
DOI: 10.6084/m9.figshare.6449189
title: MOESM4 of In silico identification of drug target pathways in breast cancer subtypes using pathway cross-talk inhibition

description: Additional file 4. Shows the network efficiency after inhibition of individual and combined pathway(s) in basal BC.
DOI: 10.6084/m9.figshare.6449189.v1
title: MOESM4 of In silico identification of drug target pathways in breast cancer subtypes using pathway cross-talk inhibition

description: Additional file 4. Shows the network efficiency after inhibition of individual and combined pathway(s) in basal BC.
DOI: 10.6084/m9.figshare.6449186
title: MOESM2 of Stress experiences in neighborhood and social environments (SENSE): a pilot study to integrate the quantified self with citizen science to improve the built environment and health

description: Additional file 2. R code. Sample R code for processing and visualizing participant Discovery Tool and biometric data.
DOI: 10.6084/m9.figshare.6449186.v1
title: MOESM2 of Stress experiences in neighborhood and social environments (SENSE): a pilot study to integrate the quantified self with citizen science to improve the built environment and health

description: Additional file 2. R code. Sample R code for processing and visualizing participant Discovery Tool and biometric data.
DOI: 10.6084/m9.figshare.6449183
title: Additional file 7: of MICMIC: identification of DNA methylation of distal regulatory regions with causal effects on tumorigenesis

description: Table S6. TF_network_motifs. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6449183.v1
title: Additional file 7: of MICMIC: identification of DNA methylation of distal regulatory regions with causal effects on tumorigenesis

description: Table S6. TF_network_motifs. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6449168
title: MOESM3 of In silico identification of drug target pathways in breast cancer subtypes using pathway cross-talk inhibition

description: Additional file 3. Shows the network efficiency after inhibition of individual and combined pathway(s) in HER2 BC.
DOI: 10.6084/m9.figshare.6449168.v1
title: MOESM3 of In silico identification of drug target pathways in breast cancer subtypes using pathway cross-talk inhibition

description: Additional file 3. Shows the network efficiency after inhibition of individual and combined pathway(s) in HER2 BC.
DOI: 10.6084/m9.figshare.6449165
title: MOESM1 of Stress experiences in neighborhood and social environments (SENSE): a pilot study to integrate the quantified self with citizen science to improve the built environment and health

description: Additional file 1. Interactive Data Map. Geospatial visualization of participant data as an html file, suitable for viewing in a web browser.
DOI: 10.6084/m9.figshare.6449165.v1
title: MOESM1 of Stress experiences in neighborhood and social environments (SENSE): a pilot study to integrate the quantified self with citizen science to improve the built environment and health

description: Additional file 1. Interactive Data Map. Geospatial visualization of participant data as an html file, suitable for viewing in a web browser.