cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7297499.v1
title: Supplementary materials for "Loss of protein synthesis quality control in host-restricted organisms"

description: This are the supplementary data for the PNAS publication entitled "Loss of protein synthesis quality control in obligate intracellular parasites".
DOI: 10.17632/687fw2n74b
title: Data for: Dynamic modeling of NOX emission in a 660 MW coal-fired boiler with LSTM

description: The raw data and processed data
DOI: 10.17632/jsf2npyjrx
title: Unravelling the patterns of exo-erythrocytic development of Haemoproteus parasites (Haemoproteidae, Haemosporida), with first case of abortive tissue stages in a naturally infected bird

description: This study aims to understand the exo-erythrocytic development of Haemoproteus parasites in naturally infected Thrush nightingales Luscinia luscinia (Muscicapidae). Thrush nightingale Luscinia luscinia were caught at the Ventė Cape (Ventės ragas Ornithological Station, 55º20′E38.93ʺN, 21º11′34.05ʺE, https://www.vros.lt, Lithuania), in May 2021 and 2023 using mist nets and a large ‘Rybachy’ type funnel trap. From each bird, a blood sample was obtained by puncture of the brachial vein with a sterile needle and collected using a heparinized microcapillary. Infections were confirmed in eight bird individuals by microscopic examination and PCR-based methods. Organs of these birds were examined using histology and chromogenic in situ hybridization, which applied genus-specific and lineage-specific oligonucleotideprobes targeting the 18S ribosomal RNA of the parasites. Exo-erythrocytic meronts of Haemoproteus attenuatus (lineage hROBIN1) were found and described for the first time in six of this avian host. Additionally, numerous megalomeronts attributed to Haemoproteus majoris (lineage hWW2) were observed in the gizzard and the heart of one individual. Two cases of empty capsular-like walls of megalomeronts were seen in the gizzard, indicating that the megalomeronts had already ruptured and degenerated. The extensive microscopic examination did not reveal gametocytes of H. majoris, obviously indicating an abortive development. This study recognised patterns in the exo-erythrocytic development of H. attenuatus, and is also the first documentation of abortive Haemoproteus infection in a naturally infected bird during exo-erythrocytic development. 
The raw data containing additional detailed information about the samples used; parasite species and lineages identified; organs infected; type, number and measurement of tissue stages seen; as well as the sequence alignments used for phylogenetic analyses are deposited in Mendeley data repository.
DOI: 10.6084/m9.figshare.11448702.v1
title: Nucleation LAMMPS Trajectory

description: This is the trajectory file meant to work with the <b>bulkTogologicalCriterion</b> example folder of d-SEAMS. Check Github to navigate the source code in the browser.The filename needs to be preserved to run without any changes.
DOI: 10.6084/m9.figshare.12948569.v1
title: Data

description: All databases necessary to run the analyses using the scripts in https://github.com/anabenlop/Island_Rule.<br>These data should be downloaded and placed in the folder: <br>https://github.com/anabenlop/Island_Rule/Data<br><br>Diet data: B_traits_guild and M_traits_guild from EltonTraits v1.0, Wilman et al. 2014 (https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1890/13-1917.1)<br>R_Traits_1 and R_Traits_ 2 from: Meiri 2018 (https://doi.org/10.1111/geb.12773)Scharf et al. 2015 (https://doi.org/10.1111/geb.12244)
DOI: 10.6084/m9.figshare.20001542.v1
title: Mock Fungal Community - metagenomic sequening datasets

description: The simulating metagenomic sequencing datasets using the NCBI ITS and LSU fungal RefSeq database sequences. Specific for testing the fungal classification performance of MicroFisher.
DOI: 10.17632/yj5z3yh6yt
title: Test instances for analysing the solution procedure

description: This dataset includes all instances used in the analysis of the solution procedure developed to solve the joint optimization of bin location, allocation, type selection, and collection frequency under stochastic waste generation. The following code for file naming is used: ...
DOI: 10.6084/m9.figshare.20409126.v2
title: Data base of beam test

description: The data is the information about the beam test.
DOI: 10.6084/m9.figshare.23528805.v1
title: Repeated measures social network analysis data

description: This is the data of our manuscript on social networks of students under academic streaming. It includes ego network measures of network size, multiplexity, network variation and turnovers.
DOI: 10.6084/m9.figshare.6115139.v2
title: STAGR_SAMScaffold_hU6

description: This plasmid can be used as a PCR Template for generating STAgR cloning inserts.
DOI: 10.17632/4d4bxpyf87
title: IFRS_9_Macroeconomic_Model_Training Dataset

description: In training dataset, there are bad rate variable and monthly macroeconomic variables from January 2018 to August 2020.Macroeconomic variables have been derived up to 3-period lagged versions and added to data set.Training dataset consists of 32 records. There are 89 (level and lagged) variables including target variable (bad rate).
DOI: 10.17632/cjjtj52st8
title: Methodological and Statistical Trend and The Topic Change In Educational Technologies For the Period 2010 – 2020

description: It contains the data of the trend article that emerged as a result of the analysis of doctoral dissertations conducted in the field of educational technologies.
DOI: 10.17632/gf2s8jkdjf
title: QF-LCA Dataset for Quantum Double-field Model, Game and Application

description: The data on this repository are for the DIB article entitled: "QF-LCA dataset: Quantum field lens coding algorithm for system state simulation and strong predictions" by P. B. Alipour and T. A. Gulliver. The dataset presents an overall preview of the method used for [1, 5] that produce the dataset.

QDF measurement data are acquired from IBMQ and QInspire platforms, and stored as an internal data collection, so to compare it to the data collected from measurement variables manually calculated and presented in the QDF articles [1, 3, 4] as *.pdf, *.pptx, *.txt, *.nb, …, and image files. The QDF system model is simulated to generate an external data collection stored on IBMQ, QInspire, or on this repository, as a QDF dataset. The dataset is examined to validate QDF state correlation and entanglement entropy (EE) relative to uncertainty measures (errors) discussed in the QDF’s method article [1]. The data are examined based on QDF’s four-main variables, defined and discussed in the QDF model article [4]. System energy states were profiled as the weighted statistical data for an intelligent decision simulator (IDS) in ‎[1]. This dataset was proposed for a quantum AI (QAI) method to classify states, and make a strong prediction of the next system state. The IDS uses the dataset to further analyze and classify states based on the expected success probability values 〈P_success〉 ≥ 2/3 (doubling the probability space from at least P ≥ 1/3 to P ≥ 2/3), for a strong system state prediction. Other statistical and probability data are based on classical and QDF computations using simulators like Mathematica and IBMQ, uploaded onto this repository, which contains the QDF circuit simulation and its datasets. The file structure is presented in Fig. 1, e.g., *.cq, *.csv, *.htm, *.ipynb, *.png, *.py, …, of the DIB article, each referring to a statistical methodology of QDF vs. classical states by the QFLCA programs. The file content and the corresponding methodology are summarized in Table 1 of the DIB article. 

The QFLCA datasets are further validated by classifying energy states and generate a QAI map to make a strong prediction based on weighted probabilities of quantum vs. classical states in a quantum game called: “Alice & Bob’s Quantum Doubles” written in Python as a QDF game [1, 4]. The QFLCA website documentation and demo files in *.mp4 under the directory show how to run the game and the QFLCC program. 

The manual calculation of the QDF model was conducted via Wolfram Alpha online based on the measurement data compared between ES and GS states as a P indicator generated for measurement samples. Small dataset samples denote: 
a. A particle pair’s energy state in a QDF (different GS states or sublevels of a GS, or see Table 2), 
b. a particle state in an SF, an ES relative to a GS from (a.) prior to a field transformation, and, 
c. the expected transformation of fields (ES ←→GS) and ⟨M(P, ψ_ij)⟩, as in Table 2.
DOI: 10.17632/myrb2gky8w
title: Modern Standard Arabic Mood Changing and Depression Dataset

description: This paper presents Modern Standard Arabic data for the automatic estimation of the risk of depression for online personas based on their daily Arabic tweets. The data was collected during 1-1-2020 and 1-1-2021 using automatically collecting samples of depression and non-depression tweets. The data contains 1230 records. This data can be used to develop machine learning tools to identify the risk of an individual being depressed and to build recommender systems that monitor depression.
DOI: 10.17632/v5s89szxpp
title: Ionospheric data from GPS and IRI-2016 model

description: This was collected by a SCINDA GPS receiver installed at Helwan University, Cairo in Egypt which is near the northern crest of the Equatorial Ionisation Anomaly. The receiver was installed by the SCINDA project during the implementation of the International Heliophysical Year program in 2009. The recording of data started in July 2009 up to August 2017 before the receiver become faulty. The actual raw files were preprocessed to textfiles for each year named "Myfiletec'year'".
There are 9 text files each with 5 columns of data in the order of DOY, hh, mm, TEC, SI representing doy of the year, hour, minute, total electron content, and scintillation index respectively. 

The IRI  data was got from the Community Coordinated Modeling Center (https://ccmc.gsfc.nasa.gov/models/modelinfo.php?model=IRI) by running year requests from 20009 to 2017. The text files contained the parameters in the following order of year, month, day, hour, minute, second, geographical positions (longitude & latitude), height, electron density, ,TEC, and peak density (NmF2).
DOI: 10.6084/m9.figshare.1145690.v1
title: The systematics and phylogeny of the Devonian subfamily Asteropyginae (Trilobita: Phacopida)

description: Traditionally, the evolutionary scenarios of Asteropyginae have been organized in two major clades involving four pygidial patterns. The first cladistic analysis performed on the subfamily maintained the organization in two clades, though the phylogenetic relationships between genera were unexpected compared to the traditional scenarios. Moreover, the previous systematic scheme based on pygidial segmentation was rendered obsolete. In this study, we performed a new phylogenetic analysis from well-known taxa and recent discoveries. Sixty species assigned to 36 genera have been analysed from a dataset of 72 characters. Three more species are used as the outgroup. The 79 most parsimonious trees have a length of 492 steps and a retention index of 0.735. Our analysis confirms the monophyly of Asteropyginae excluding the genus <i>Protacanthina</i>. The phylogenetic pattern is unconventional in that a largely pectinate topology is resolved, rather than two clades corresponding to formerly delimited pygidial morphs. Nevertheless, most relationships between genera suggested in the traditional evolutionary scenarios of the subfamily have been recovered, the main differences being the origin of the group. Whereas <i>Treveropyge</i> was usually considered as the origin of the remaining Asteropyginae, the present results instead identify <i>Destombesina</i> as the sister group to all remaining members of the subfamily. From the new phylogenetic pattern, the diagnoses of genera are rewritten in a standard way and to delimit clades more accurately. This work implies modified generic assignments for some species and the erection of four new genera: <i>Minicryphaeus</i> gen. nov., <i>Gandlops</i> gen. nov., <i>Morzadecops</i> gen. nov. and <i>Pennarbedops</i> gen. nov. The systematic position of <i>Erbenochile</i> is also discussed, the genus no longer being assigned to Asteropyginae.http://zoobank.org/urn:lsid:zoobank.org:pub:C42A54C3-2B8E-439A-8DE0-2F35575F7F40
DOI: 10.6084/m9.figshare.13055615.v4
title: Urbanization and its impact on flood risk: The case of Addis Ababa, Ethiopia

description: Addis Ababa city rainfall raw data (1976-2016) acquired from Ethiopian meteorological agency<br>
DOI: 10.6084/m9.figshare.21646931.v1
title: Data used in paper "Crustal and upper mantle velocity structure of SE Tibet from joint inversion of Rayleigh wave phase velocity and teleseismic body wave data"

description: The CC file provides the cross-correlation waveforms used in this study. The teleseismic_surface_waveforms and teleseismic_body_waveforms files provide the teleseismic surface and body waveforms, respectively. The phase_velocities file provides the Rayleigh wave phase velocities with all periods in this study. <br>
DOI: 10.6084/m9.figshare.25958233.v2
title: Survey of Male University Students on Testicular Cancer (TC) and Testicular Self-Examination (TSE) - raw dataset

description: A cross-sectional study assessed knowledge of and attitudes toward TCa and TSE, and TSE practices among undergraduate male students in southern Ghana.
DOI: 10.17632/88sbcxnyhd
title: Impact of China's protectionist policies on the market capitalization of China’s high-tech companies

description: In my research I discover the impact of China's protectionist policies on the market value of Chinese technology companies. The presented dataset covers the period from 2014 to 2023 and contains stock quotes from 14 Chinese technology companies and 3 market indices: Shenzhen Component Index, Shanghai Stock Exchange and Hong Kong Stock Exchange. In the time period I mentioned above, I’ve also studied the impact of 20 laws that could potentially have an impact on the capitalization of Chinese technology companies.
DOI: 10.6084/m9.figshare.11388864.v1
title: Gene Set Enrichment Analysis Results

description: Full set of gene set enrichment analysis results
DOI: 10.6084/m9.figshare.28738190.v23
title: Syllogistic reasoning pdf v1-2-3-4.rar

description: Logic and being
DOI: 10.6084/m9.figshare.3559965.v1
title: Appendix C. Field methods and analyses of the butterfly surveys of the Aargau Biodiversity Monitoring Program.

description: Field methods and analyses of the butterfly surveys of the Aargau Biodiversity Monitoring Program.
DOI: 10.17632/cvcw2x6zxb
title: Geometrically controlled cardiac microtissues promote vascularization and reduce inflammation in vitro and in vivo Dataset #1

description: All in vitro data and analysis, Figure 2, 3, 4, 7; Figure S1-S4, S6, S7
DOI: 10.17632/t8bp9j9nyb
title: Results from the case study employing the PSA-based approach for the evaluation of plant level testing strategies.

description: This database include case study results of the PSA-based approach for the evaluation of plant level testing strategies. The case study comprises the evaluation of 64 plant level testing strategies applied to the generic Pressurized Water Reactor (PWR) NPP PSA model presented in https://data.mendeley.com/datasets/y9wfgyk6nz/1#folder-d062efaf-c881-46aa-b7c1-73be535bf5c0
DOI: 10.6084/m9.figshare.13578050.v1
title: data and pictures

description: raw data, processed data and pictures
DOI: 10.6084/m9.figshare.18986852.v1
title: Codebook and Variables Description

description: A file containing the codebook of the "Metadata file" (sheet "all") and the description of the variables included in each dataset containing COVID-19 death counts.
DOI: 10.6084/m9.figshare.22214530.v1
title: Supplementary Material for: Albumin-Bilirubin Grade Analyses of Atezolizumab Plus Bevacizumab vs Sorafenib in Patients With Unresectable Hepatocellular Carcinoma: A Post Hoc Analysis of the Phase III IMbrave150 Study

description: Introduction: Atezolizumab + bevacizumab showed survival benefit in patients with unresectable hepatocellular carcinoma (HCC) vs sorafenib in the Phase III IMbrave150 study. This exploratory analysis examined the prognostic impact of baseline albumin-bilirubin (ALBI) score. Methods: Patients with treatment-naïve unresectable HCC, ≥1 measurable untreated lesion and Child-Pugh Class A liver function were randomized 2:1 to receive atezolizumab 1200 mg + bevacizumab 15 mg/kg every 3 weeks or sorafenib 400 mg twice daily. Overall survival (OS) and progression-free survival (PFS) were assessed in the intention-to-treat population by ALBI/modified (m)ALBI grade. Time to deterioration (TTD; defined as time to 0.5-point increase from baseline ALBI score over 2 visits or death) of liver function and safety were investigated. Results: Of 501 enrolled patients, 336 were randomized to receive atezolizumab + bevacizumab (ALBI Grade (G) 1: n=191; G2: n=144 (mALBI G2a: n=72, G2b: n=72); missing ALBI Grade: n=1) and 165 to sorafenib (ALBI G1: n=87; G2: n=78 (mALBI G2a: n=37; G2b: n=41)). Median follow-up was 15.6 months. OS and PFS improved with atezolizumab + bevacizumab vs sorafenib in patients with ALBI G1 (OS HR, 0.50 (95% CI: 0.35, 0.72); PFS HR, 0.61 (95% CI: 0.45, 0.82)). In patients with ALBI G2 or mALBI G2a or G2b, PFS was numerically longer with atezolizumab + bevacizumab vs sorafenib but no OS benefit was seen. Median TTD in the intention-to-treat population was 10.2 months (95% CI: 8.0, 11.0) with atezolizumab + bevacizumab vs 8.6 months (95% CI: 6.2, 11.8) with sorafenib (HR, 0.82 (95% CI: 0.65, 1.03)). Safety profiles of atezolizumab and bevacizumab were consistent with previous analyses, regardless of ALBI grade. Discussion/Conclusion: ALBI grade appeared to be prognostic for outcomes with both atezolizumab + bevacizumab and sorafenib treatment in patients with HCC. Atezolizumab + bevacizumab preserved liver function for a numerically longer duration than sorafenib.
DOI: 10.6084/m9.figshare.28430273.v1
title: AQP3_Suppl. tables.xlsx

description: Supplementary tables from Huynh et al. 2025
DOI: 10.6084/m9.figshare.28740278.v1
title: Pan-genome analysis of Liriodendron reveals presence/absence variations associated with growth traits

description: In this study, we constructed a pan-genome of Liriodendron based on 24 accessions. Comparative analysis with the reference genome revealed 116 Mb of non-reference sequences and obtained 32,773 genes, including 3,558 novel genes. We subsequently employed resequencing data from 247 Liriodendron genotypes to identify PAVs, comprising 13,779 core genes and 18,179 dispensable genes. To further assess PAV applicability, a genome-wide association study (GWAS) was conducted to link gene PAVs with growth traits, including tree height (H), diameter at breast height (DBH), clear bole height (CBH), and crown length ratio (CLR), in hybrid Liriodendron. This approach identified 14 candidate genes associated with these growth traits above. Additionally, gene PAVs appeared to predominantly contribute to heterosis in growth traits, displaying a dominant expression pattern when comparing leaf, shoot, and phloem tissues of strong and weak heterotic combinations. Additionally, we identified two key candidate genes, Litul.02G164100 and Litul.01G057400, which appear to drive hybrid vigor by exhibiting high parental expression patterns in strong heterotic combinations of leaf and shoot tissues. Altogether, this study expands the Liriodendron genomic dataset, identifies candidate genes linked to growth traits, and provides insights into their heterotic mechanisms in hybrid Liriodendron. These findings offer a valuable genetic resource for molecular breeding and functional genomics research in Liriodendron.
DOI: 10.6084/m9.figshare.28914851.v1
title: Figure 1 and 2 cell binding data

description: Cell binding data analysis in Figure 1 and 2 from Sabnis et al., 2025 CLMShttps://pubmed.ncbi.nlm.nih.gov/39890638/
DOI: 10.6084/m9.figshare.29206427
title: Supporting tables for<b> </b>flavonoids inhibition of dengue virus envelope protein

description: In this study, we made a database of flavonoids based on literature reports on their antiviral activity, structural diversity, and drug-likeness profiles. The main goal was to explore the inhibitory effects of flavonoids against an envelope inhibitor among the tested molecules. By utilizing molecular docking, molecular dynamics simulations, and free energy calculations, we predict where the flavonoids bind to the E protein structure, assess their interaction and stability in the orthosteric site, and determine the drug-likeness properties of flavonoids.
DOI: 10.6084/m9.figshare.29206427.v1
title: Supporting tables for<b> </b>flavonoids inhibition of dengue virus envelope protein

description: In this study, we made a database of flavonoids based on literature reports on their antiviral activity, structural diversity, and drug-likeness profiles. The main goal was to explore the inhibitory effects of flavonoids against an envelope inhibitor among the tested molecules. By utilizing molecular docking, molecular dynamics simulations, and free energy calculations, we predict where the flavonoids bind to the E protein structure, assess their interaction and stability in the orthosteric site, and determine the drug-likeness properties of flavonoids.
DOI: 10.6084/m9.figshare.11912682.v1
title: Insect survey data by method and pollinator group

description: This dataset includes the number of individuals observed through various sampling methods - visual observation and time-lapse for bee, hoverfly, butterfly, and wasps, and light trapping for moths over 12 sampling periods.
DOI: 10.6084/m9.figshare.12480341.v1
title: Supplementary Material for: <b><i>NT5C2</i></b> Gene Polymorphisms and the Risk of Coronary Heart Disease

description: <b><i>Background:</i></b> Increasing studies have reported that 5′-nucleotidase cytosolic II (<i>NT5C2</i>) has a strong relationship with coronary heart disease (CHD) development. This study was designed to examine the relationship between <i>NT5C2</i> polymorphisms and CHD in the Chinese Han population. <b><i>Methods:</i></b> We studied 501 CHD patients and 496 healthy controls from the Second Affiliated Hospital of Hainan Medical University in Hainan Province, China. Four single nucleotide polymorphisms (SNPs) in <i>NT5C2</i> were selected and genotyped using Agena MassARRAY technology. Odds ratios and 95% confidence intervals were calculated using logistic regression after adjusting for age and gender. Stratification analysis was performed by age and gender in all individuals; we especially investigated the effects of <i>NT5C2</i> SNPs on hypertension and diabetes among CHD patients. <b><i>Results:</i></b> rs2148198 of <i>NT5C2</i> was strongly associated with an increased risk of CHD (allele: <i>p</i> = 0.045; codominant: <i>p</i> = 0.007; additive: <i>p</i> = 0.016). Stratified analysis revealed that rs2148198 was associated with increased CHD risk in individuals aged ≤61 years and males. For CHD patients, rs2148198 significantly affected the risk of hypertension and diabetes (<i>p</i> &lt; 0.05). Further, rs79237883 of <i>NT5C2</i> was associated with decreased susceptibility to hypertension in multiple genetic models for individuals with CHD (allele: <i>p</i> = 0.007; codominant: <i>p</i> = 0.001; dominant: <i>p</i> = 0.001; additive: <i>p</i> = 0.008). <b><i>Conclusion:</i></b> This study reports the association of <i>NT5C2</i> gene variants and CHD susceptibility in the Chinese Han population. Especially, <i>NT5C2</i> rs2148198 was significantly associated with CHD risk in the subgroups of males, hypertension, and diabetes.
DOI: 10.6084/m9.figshare.24256750.v1
title: chanlcocs_BoD_mod_32

description: EEG data recorded during Butoh Dancing and control tasks