cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p91p2sog
title: Maps of multiple future threats and stable areas for Gunnison sage-grouse habitats across three scenarios (2016-2070)

description: This dataset contains a series of maps of projected threats and current state of habitats for the threatened Gunnison sage-grouse (Centrocercus minimus). The maps are 30-m spatially explicit projections of current habitats (2016) and future landscape change (by 2070) for the full range of the species&rsquo; seven extant populations, which cover diverse ecoregions of the imperiled sagebrush biome of the western United States. Risk maps assessed projected changes caused by climate change-driven shifts in sagebrush habitats, mesic habitats, pinyon-juniper encroachment, and invasive annual grasses, as well as potentially synergistic risk of development and wildfire. We used a scenario-based risk assessment framework based on the U.S. Fish & Wildlife Service&rsquo;s Species Status Assessment for Gunnison Sage-grouse. This aligned individual projections for each threat into three combinatory scenarios of change: Pessimistic (P; hot and dry future climate, high development), Continuation (C; moderately hot, moderate development), and Optimistic (O; warm and wet, low development). An additional set of habitat Vulnerability (V) maps integrates current and future datasets across scenarios to map areas that are currently partially degraded, fully degraded, sometimes at-risk across future scenarios, always at-risk, or stable both currently and in the future. Lastly, Overall species vulnerability maps describe cumulative vulnerability to all six threats as a mean weighted by relevance to Gunnison sage-grouse habitat selection and the sum number of threats that were at-risk in future projections.
DOI: 10.6084/m9.figshare.17169610
title: Additional file 4 of A comprehensive gene-centric pleiotropic association analysis for 14 psychiatric disorders with GWAS summary statistics

description: Additional file 4: Table S3. List of all the unique pleiotropic genes and the number of psychiatric disorders which were affected by these genes.
DOI: 10.6084/m9.figshare.16645037.v1
title: Virologic response maintenance and hepatocellular carcinoma in chronic hepatitis B patients treated with entecavir

description: The treatment evidence for entecavir-treated chronic hepatitis B (CHB) patients without maintaining of virologic response (MVR, defined as persistent HBV DNA &lt;20 IU/mL during therapy) remains uncertain. We aimed to determine the relationship between non-MVR and hepatocellular carcinoma (HCC) risk in entecavir-treated CHB patients. A cohort of 1447 entecavir-treated CHB patients were enrolled. Multivariate and propensity score-based inverse probability weighting (IPW) model was performed to estimate the effect of MVR on HCC. During a median follow-up of 5 years, 214 (14.8%) patients occurred with non-MVR. Non-MVR patients had a higher risk of HCC [the IPW model: hazard ratio (HR) = 3.59, 95% confidence interval (CI): 2.23–5.75] than MVR patients, especially in those with cirrhosis (HR = 4.60, 95% CI: 2.81–7.56) and the high HCC score by the Chinese University of Hong Kong (HR = 4.35, 95% CI: 2.58–7.32). MVR patients with transient (HR = 4.72, 95% CI: 1.98–11.24) or persistent (HR = 12.16, 95% CI: 3.58–41.31) abnormal ALT after virologic response had higher HCC hazard. Our study indicated an elevated HCC probability for entecavir-treated CHB patients with Non-MVR, especially for those with cirrhosis or a high predicted score at baseline. For MVR patients, the trajectories of ALT after virologic response suggested different HCC risks.
DOI: 10.6084/m9.figshare.12450764
title: Additional file 4 of Characterization of the transcriptional divergence between the subspecies of cultivated rice (Oryza sativa)

description: Additional file 4 Heritability of gene expression for full population (Indica and Japonica).
DOI: 10.6084/m9.figshare.16645037.v2
title: Virologic response maintenance and hepatocellular carcinoma in chronic hepatitis B patients treated with entecavir

description: The treatment evidence for entecavir-treated chronic hepatitis B (CHB) patients without maintaining of virologic response (MVR, defined as persistent HBV DNA &lt;20 IU/mL during therapy) remains uncertain. We aimed to determine the relationship between non-MVR and hepatocellular carcinoma (HCC) risk in entecavir-treated CHB patients. A cohort of 1447 entecavir-treated CHB patients were enrolled. Multivariate and propensity score-based inverse probability weighting (IPW) model was performed to estimate the effect of MVR on HCC. During a median follow-up of 5 years, 214 (14.8%) patients occurred with non-MVR. Non-MVR patients had a higher risk of HCC [the IPW model: hazard ratio (HR) = 3.59, 95% confidence interval (CI): 2.23–5.75] than MVR patients, especially in those with cirrhosis (HR = 4.60, 95% CI: 2.81–7.56) and the high HCC score by the Chinese University of Hong Kong (HR = 4.35, 95% CI: 2.58–7.32). MVR patients with transient (HR = 4.72, 95% CI: 1.98–11.24) or persistent (HR = 12.16, 95% CI: 3.58–41.31) abnormal ALT after virologic response had higher HCC hazard. Our study indicated an elevated HCC probability for entecavir-treated CHB patients with Non-MVR, especially for those with cirrhosis or a high predicted score at baseline. For MVR patients, the trajectories of ALT after virologic response suggested different HCC risks.
DOI: 10.5281/zenodo.10685005
title: Pain_CVModel

description: The dataset comprised 1000+ images meticulously curated to ensure diversity in pain expressions across various demographics. Leveraging publicly available datasets such as the Delaware Pain Dataset and open-source repositories, we collected over 1500+ pain-expressing faces, each meticulously labelled based on the presence of specific AUs associated with pain expressions.
DOI: 10.5281/zenodo.10685006
title: Pain_CVModel

description: The dataset comprised 1000+ images meticulously curated to ensure diversity in pain expressions across various demographics. Leveraging publicly available datasets such as the Delaware Pain Dataset and open-source repositories, we collected over 1500+ pain-expressing faces, each meticulously labelled based on the presence of specific AUs associated with pain expressions.
DOI: 10.25387/g3.7207718.v1
title: Supplemental Material for Lai et al., 2018

description: This dataset provides information about whole genome bisulphite sequencing (WGBS) and RNA-seq. The plant material is cucumber shoot species that were subjected to photoperiod treatment. <b>Figure S1 </b>The overwhelming majority of the CHH-DmCs showed levels of methylation changes ranging from 0.3-0.6, while CG- and CHG-DmCs had less extensive changes.<b>Figure S2</b> Gene classification of DEGs resulting from the long-day treatment based on GO terms.
DOI: 10.6084/m9.figshare.13499378.v1
title: Geochronology, geochemistry and zircon Hf isotope constraints on petrogenesis and tectonic setting of Early Permian volcanic rocks from Sonid Youqi area, Solonker Zone

description: The mineral composition, whole-rock geochemistry, Sr–Nd isotopes, and in situ zircon U–Pb and Lu–Hf isotopes for mafic and intermediate-felsic volcanic rocks in the Sonid Youqi area were determined to unravel their petrogenesis and the Early Permian tectonic setting of the Solonker Zone, Central Asian Orogenic Belt. Zircon U–Pb ages suggested that these rocks formed in the Early Permian. The mafic volcanic rocks were depleted in Ba, Th, and Nb, enriched in Rb, U, and Sr, and had variable zircon ε<sub>Hf</sub>(t) values, with constant Th/Yb and variable Ba/La ratios, indicating that the mafic magma originated from the fluid-metasomatized mantle. The intermediate-felsic volcanic rocks were depleted in Ba, Th, Nb, Ta, and Ti and enriched in Sr, Zr, and Hf. Geochemical modelling and mineralogical observations suggested that magma mixing dominated the magmatic process. These features, along with variable SiO<sub>2</sub> and MgO contents and zircon ε<sub>Hf</sub>(t) values of +9.40 to +13.47, suggested that these rocks originated from the mixing of melts from the mantle and juvenile crust. Early Permian volcanic rocks from the Solonker Zone had depleted Sr–Nd isotopic compositions, similar to those from the Japan Sea back-arc basin basalts. Their geochemical characteristics differed from those rocks formed during the initial subduction. In combination with previous studies, we suggest that the generation of these Early Permian rocks from the Solonker Zone occurred in an extensional tectonic setting that induced by the slab break-off of Hegenshan Ocean.
DOI: 10.17630/0b6aa0a8-d46a-4660-ad87-320c982746ee
title: The role of large scale flows in molecular cloud formation in spiral galaxies (Thesis data)

description: This repository includes text files containing data extracted from the simulations described in the thesis. More details are provided in the README.txt file.
DOI: 10.6084/m9.figshare.12450704.v1
title: Additional file 10 of Complete plastome sequencing resolves taxonomic relationships among species of Calligonum L. (Polygonaceae) in China

description: Additional file 10. Excel spreadsheet of the heterozygous sites and inter-individual polymorphic sites of nrITS sequences. * represents the sequence from Genbank. △ = CGGAGATC.
DOI: 10.6084/m9.figshare.17163326
title: Additional file 7 of Structural and mechanistic basis of the high catalytic activity of monooxygenase Tet(X4) on tigecycline

description: Additional file 7: Table S2. Primers were used in this study.
DOI: 10.6084/m9.figshare.17163326.v1
title: Additional file 7 of Structural and mechanistic basis of the high catalytic activity of monooxygenase Tet(X4) on tigecycline

description: Additional file 7: Table S2. Primers were used in this study.
DOI: 10.6084/m9.figshare.17169607
title: Additional file 3 of A comprehensive gene-centric pleiotropic association analysis for 14 psychiatric disorders with GWAS summary statistics

description: Additional file 3: Table S2. Pleiotropic genes for all pairs of 14 psychiatric disorders identified by PLACO (FDR &lt; 0.05).
DOI: 10.6084/m9.figshare.20315037.v1
title: Gene expression of the white-rot fungus <i>Lenzites gibbosa</i> during wood degradation

description: To determine the wood degradation mechanism and its key genes and biological processes of <i>Lenzites gibbosa</i>, we sequenced 15 transcriptomes of mycelial samples under woody environment at 3, 5, 7, and 11 d (D3, D5, D7, and D11) and nonwoody environment (control). All the transcripts were annotated as much as possible in eight databases to determine their function. The key genes and biological processes relating to wood degradation were predicted and screened. The expression of 11 key genes during wood degradation after 5 d of sawdust treatment was detected by quantitative polymerase chain reaction (PCR). A total of 2069 differentially expressed genes (DEGs) were obtained in 10 differential groups. Comparing wood with nonwood treatment condition, the key genes were those participating in oxidation-reduction process, they were oxidoreductase and peroxidase genes and their regulator genes; these genes mainly focused on the three biological processes of carbohydrate metabolism, lignin catabolism, and secondary metabolite biosynthesis, transport, and catabolism. The mostly enriched subcategories in molecular function were oxidoreductase activity, peroxidase activity, and heme binding in Gene Ontology (GO) annotation. One cellulose and hemicellulose degradation pathway and seven pathways related to lignin-derived aromatic compound degradation or the later degradation of lignin were found. In conclusion, during the process of <i>L. gibbosa</i> growing on wood, gene expression at the transcriptional level indicated that lignin catabolism and hyphal growth were promoted, but the metabolism of carbon and carbohydrates including cellulose in lignocellulose in overall trend was inhibited to some extent. The results have important reference value for the study of degradation mechanism of wood white rot.
DOI: 10.6084/m9.figshare.12450755
title: Additional file 3 of Characterization of the transcriptional divergence between the subspecies of cultivated rice (Oryza sativa)

description: Additional file 3 Results of differential expression and presence-absence variation analyses.
DOI: 10.25318/1710000501-fra
title: Estimations de la population au 1er juillet, par âge et genre

description: Nombre estimé de personnes au 1er juillet selon le groupe d'âge de 5 ans et le genre, et âge médian, Canada, provinces et territoires.
DOI: 10.6084/m9.figshare.21358158.v1
title: Additional file 4 of Elevated NRAS expression during DCIS is a potential driver for progression to basal-like properties and local invasiveness

description: Additional file 4: Table S3. NRAS overexpression induces basal-like features in a human luminal DCIS model SUM225 cells.
DOI: 10.6084/m9.figshare.25254076
title: hg38_trackDb.txt

description: this is the trackDB for a UCSC hub
DOI: 10.6084/m9.figshare.25254076.v1
title: hg38_trackDb.txt

description: this is the trackDB for a UCSC hub
DOI: 10.6084/m9.figshare.12450782.v1
title: Additional file 7 of Characterization of the transcriptional divergence between the subspecies of cultivated rice (Oryza sativa)

description: Additional file 7 cis-eQTL results.
DOI: 10.6084/m9.figshare.5635039
title: JADE for Tensor-Valued Observations

description: Independent component analysis is a standard tool in modern data analysis and numerous different techniques for applying it exist. The standard methods however quickly lose their effectiveness when the data are made up of structures of higher order than vectors, namely, matrices or tensors (e.g., images or videos), being unable to handle the high amounts of noise. Recently, an extension of the classic fourth-order blind identification (FOBI) specially suited for tensor-valued observations was proposed and showed to outperform its vector version for tensor data. In this article, we extend another popular independent component analysis method, the joint approximate diagonalization of eigen-matrices (JADE), for tensor observations. In addition to the theoretical background, we also provide the asymptotic properties of the proposed estimator and use both simulations and real data to show its usefulness and superiority over its competitors. Supplementary material including the proofs of the theorems and the codes for running the simulations and the real data example are available online.
DOI: 10.6084/m9.figshare.16645104.v1
title: Redescription of ‘<i>Amyzon</i>’ <i>brevipinne</i> and remarks on North American Eocene catostomids (Cypriniformes: Catostomidae)

description: The Eocene catostomid fish (Cypriniformes: Catostomidae) from the Allenby Formation, British Columbia, Canada, is reviewed and revised based on recently collected specimens. The fish was originally recognized as a catostomid by Cope in 1893 and described as <i>Amyzon brevipinne</i>. Wilson comprehensively redescribed the species in 1977 based on a large collection. More specimens collected recently brought to light the need for a systematic revision of this species, different from all known <i>Amyzon</i> species in having a narrow frontal bone with elongated orbital notch, shallow and slender infraorbital series, broad opercle, and short and slender rib 4. It differs from the type species <i>Amyzon mentale</i> in having a shorter posteroventral process of the dentary and fewer dorsal fin rays. Given the differences from all known Eocene catostomid species, <i>Amyzon brevipinne</i> is herein assigned to a new genus as <i>Wilsonium brevipinne</i>. Phylogenetically, this species is resolved as the most basal taxon of Catostomidae. The small-sized fluvial specimens of <i>Wilsonium brevipinne</i> represent the first recognized dwarf catostomid species in the fossil record (maximum standard length ∼ 84 mm). It is also worth noting that <i>Wilsonium</i> gen. nov. differs from all known catostomids in the elongated orbital notch, shallow and slender infraorbital series and non-robust rib 4. These features are seen in some loaches and gyrinchelids. http://zoobank.org/urn:lsid:zoobank.org:pub:A185883A-68FC-4A7F-A103-889EE22ED134
DOI: 10.17630/5959f528-af12-427e-b788-b335f8e42fa3
title: Flexible Holographic Metasurfaces (Thesis data)

description: PhD Thesis
DOI: 10.25318/1710000601-eng
title: Estimates of deaths, by age and gender, annual

description: Estimated annual number of deaths by 5-year age groups and gender for Canada, provinces and territories.
DOI: 10.34740/kaggle/dsv/7666170
title: WoW Classic Gamer Jargon & Terms Dataset
DOI: 10.6084/m9.figshare.16639590.v1
title: Additional file 1 of Primary breast double-hit lymphoma management and outcomes: a real-world multicentre experience

description: Additional file 1. Original data.
DOI: 10.17632/hgn5gwy8h3.1
title: Data on chemical and pharmacological characteristics of simplicia and ethanol extract of Moringa oleifera leaves

description: The chemical and pharmacological characteristics of simplicia and ethanol extract of Moringa oleifera leaves data consisting of water content, acid-insoluble ash content, microbial contamination, heavy metal contamination, phytochemical analysis, TLC analysis, chemical profiling using LC-MS/MS, and the antioxidant activity. The data obtained on the characteristics of M. oleifera leaves simplicia were compared with the standards set by the Indonesian Herbal Pharmacopoeia. Qualitative phytochemistry indicates that the ethanol extract of M. oleifera leaves contains flavonoids, tannins, and steroids. In total of 39 phytoconstituents were tentatively identified; the top 10 active compounds with the highest relative abundance percentage (%) are 4-undecylbenzenesulfonic acid (4,83), apigetrin (3,34), quercetin-3β-D-glucoside (3,28), D-(-)-quinic acid (1,69), corchorifatty acid F (1,52), 4-hydroxybenzaldehyde (1,47), isopropylmalic acid (1,17), 13(S)-HOTrE (1,08), astragalin (0,99), and D-(+)-phenyllactic acid (0,70). The ethanol extract of M. oleifera leaves contained a total phenolic content 7728,02 mg/kg, total flavonoids as quercetin content 1,19%, and antioxidant activity IC50 1422,45 mg/kg.
DOI: 10.25318/1710000601-fra
title: Estimations des décès, par âge et genre, annuelles

description: Nombre annuel estimé de décès par groupes d'âge de 5 ans et par genre, Canada, provinces et territoires.
DOI: 10.17630/ced80b64-fa40-4d15-8f17-78bb4f06562f
title: Data underpinning: Sub-micromolar pulse dipolar EPR spectroscopy reveals increasing Cu(II)-labelling of double-histidine motifs with lower temperature
DOI: 10.6084/m9.figshare.17169564.v1
title: Additional file 1 of 8DEstablishment and validation of a hypoxia-related signature predicting prognosis in hepatocellular carcinoma

description: Additional file 1. 200 hypoxia-related genes were acquired from the gene set enrichment analysis (GSEA) website.
DOI: 10.25318/1710001401-eng
title: Estimates of the components of international migration, by age and gender, annual

description: Annual number of international migrants by 5-year age groups and gender for Canada, provinces and territories.
DOI: 10.17632/hgn5gwy8h3.2
title: Data on chemical and pharmacological characteristics of simplicia and ethanol extract of Moringa oleifera leaves

description: Moringa oleifera is a medicinal plant that has long been known and used by the community to prevent and treat various diseases and health problems. In this study, we characterized M. oleifera leaves simplicia as basic information regarding the quality and safety of a medicinal substance. Furthermore, we also report on the phytochemical profile and active compound content of M. oleifera leaves ethanol extract as well as its pharmacological properties as an antioxidant. The data obtained on the characteristics of M. oleifera leaves simplicia were compared with the standards set by the Indonesian Herbal Pharmacopoeia. The ethanol extract of M. oleifera leaves contains flavonoids, tannins, and steroids. LCMS analysis LCMS analysis found that there were 39 active compounds in the ethanol extract of Moringa leaves. The extract also contains total phenolics and flavonoids which show antioxidant activity.
DOI: 10.6084/m9.figshare.17169613
title: Additional file 5 of A comprehensive gene-centric pleiotropic association analysis for 14 psychiatric disorders with GWAS summary statistics

description: Additional file 5: Table S4. Unique genes with drug-gene interaction of directional effects on 14 psychiatric disorders.
DOI: 10.25318/1710001401-fra
title: Estimations des composantes de la migration internationale, par âge et genre, annuelles

description: Nombre de migrants internationaux par groupes d'âge de 5 ans et par genre, Canada, provinces et territoires.
DOI: 10.6084/m9.figshare.17694752.v1
title: Downregulation of Smad4 expression confers chemoresistance against imatinib mesylate to chronic myeloid leukemia K562 cells

description: <b>Objective:</b> Imatinib mesylate (IM), a tyrosine kinase inhibitor, exhibits clinically prominent effects against chronic myeloid leukemia (CML); however, a few patients have shown resistance to IM treatment, resulting in disease progression. Smad4 is a tumor inhibitor that transduces TGF-β signaling and modulates genomic stability. Previous studies have indicated that decreased Smad4 expression played a bidirectional role in chemosensitivity in many types of cancers. Therefore, this study aims to evaluate the association between IM sensitivity and decreased Smad4 expression in human CML K562 cells. <b>Methods:</b> Bone marrow (BM) samples were acquired from the patients prior to treatment. qRT-PCR, Western Blotting (WB), colony formation assay (CFA), and apoptosis assay were used to detect relevant indices. <b>Results:</b> Smad4 expression was downregulated in the bone marrow and plasma of patients with multidrug-resistant CML as well as IM-resistant K562 (K562R) cells compared with samples collected from CML patients and K562 cells. Smad4 overexpression inhibited IM-treated K562R cell proliferation and augmented apoptosis, whereas <i>Smad4</i> silencing promoted viability and inhibited apoptosis in IM-treated K562 cells. In addition, Smad4 expression was inversely correlated with laminin subunit gamma 1 (LAMC1) expression. The upregulation or downregulation of LAMC1 expression partially abolished the effect of Smad4 overexpression or silencing on the IM resistance of CML cells. <b>Conclusion:</b> The downregulation of Smad4 expression might induce drug resistance in CML cells and displayed a possible mechanism through which Smad4 modulates CML cell survival and apoptosis upon IM treatment.
DOI: 10.17630/17fd26d7-6099-4685-9762-f1a65b1e2d4e
title: Data relating to article "Octahedral Tilting in the Polar Hexagonal Tungsten Bronzes RbNbW2O9 and KNbW2O9"

description: Cifs related to the room temperature structures of RbNbW2O9 and KNbW2O9 as determined from powder neutron diffraction.