cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0945476.10fu
title: SH0945476.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.trdky9
title: Occurrence Download

description: A dataset containing 1830 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eriobotrya japonica (Thunb.) Lindl.",
 "Country is Brazil",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 1830 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0100801-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0945477.10fu
title: SH0945477.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.25582/data.2023-07.2848414/2436334
title: Data for EMSL Project 60675 from July 2023
DOI: 10.25582/data.2023-03.2769464/2436335
title: Data for EMSL Project 60675 from March 2023
DOI: 10.15156/bio/sh0945478.10fu
title: SH0945478.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0945479.10fu
title: SH0945479.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0945480.10fu
title: SH0945480.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.xf3xn2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phrynobatrachus jimzimkusi Zimkus, Gvozdík & Gonwouo, 2013)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0100802-240626123714530/datasets/export for details.
DOI: 10.15156/bio/sh0945481.10fu
title: SH0945481.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0945482.10fu
title: SH0945482.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.25582/data.2023-07.2848302/2436336
title: Data for EMSL Project 60675 from July 2023
DOI: 10.15156/bio/sh0945483.10fu
title: SH0945483.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0945484.10fu
title: SH0945484.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.zpnbhj
title: Occurrence Download

description: A dataset containing 93119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lacerta bilineata Daudin, 1802",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 93119 records from 2246 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0100795-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.7991453
title: Additional file 2: of TRIM47 is up-regulated in colorectal cancer, promoting ubiquitination and degradation of SMAD4

description: Clinial information of 100 cases CRC patients (fresh tissues). (XLSX 16 kb)
DOI: 10.6084/m9.figshare.13225928.v1
title: Additional file 8 of Genome-wide identification, and phylogenetic and expression profiling analyses, of XTH gene families in Brassica rapa L. and Brassica oleracea L.

description: Additional file 8. FPKM values for XTH genes in different tissues of B. rapa and B. oleracea.
DOI: 10.6084/m9.figshare.13225931
title: Additional file 9 of Genome-wide identification, and phylogenetic and expression profiling analyses, of XTH gene families in Brassica rapa L. and Brassica oleracea L.

description: Additional file 9. The alignment file used as input for the ML analysis in FASTA format.
DOI: 10.6084/m9.figshare.13225904
title: Additional file 1 of Genome-wide identification, and phylogenetic and expression profiling analyses, of XTH gene families in Brassica rapa L. and Brassica oleracea L.

description: Additional file 1. XTHs in B. rapa and B. oleracea with their Arabidopsis orthologs.
DOI: 10.6084/m9.figshare.13225925.v1
title: Additional file 7 of Genome-wide identification, and phylogenetic and expression profiling analyses, of XTH gene families in Brassica rapa L. and Brassica oleracea L.

description: Additional file 7. Ka/Ks analysis and estimated time of divergence of duplicated pairs of XTH genes in B. rapa and B. oleracea.
DOI: 10.6084/m9.figshare.13225904.v1
title: Additional file 1 of Genome-wide identification, and phylogenetic and expression profiling analyses, of XTH gene families in Brassica rapa L. and Brassica oleracea L.

description: Additional file 1. XTHs in B. rapa and B. oleracea with their Arabidopsis orthologs.
DOI: 10.6084/m9.figshare.7991453.v1
title: Additional file 2: of TRIM47 is up-regulated in colorectal cancer, promoting ubiquitination and degradation of SMAD4

description: Clinial information of 100 cases CRC patients (fresh tissues). (XLSX 16 kb)
DOI: 10.6084/m9.figshare.22671533.v1
title: Additional file 2 of pycoMeth: a toolbox for differential methylation testing from Nanopore methylation calls

description: Additional file 2. Benchmark data. Spreadsheet containing sample names, cell line, and download links for raw data (ONT fast5 files) and for VCF files containing SNVs.
DOI: 10.6084/m9.figshare.7991426
title: Additional file 2: of m6A-induced lncRNA RP11 triggers the dissemination of colorectal cancer cells via upregulation of Zeb1

description: Table S1. The clinic pathological features of clinical CRC tissues (n = 32). Table S2.Â Sequences of primers. Table S3. The information of 8 lncRNAs. Table S4. The protein information of RP11 pull down/MS analysis. Table S5. Factors related to the stability of Zeb1 in cancer cells. (ZIP 279 kb)
DOI: 10.6084/m9.figshare.7991456.v1
title: Additional file 3: of TRIM47 is up-regulated in colorectal cancer, promoting ubiquitination and degradation of SMAD4

description: Clinial information of Female8Male cases CRC patients (paraffin tissues). (XLSX 21 kb)
DOI: 10.6084/m9.figshare.22671533
title: Additional file 2 of pycoMeth: a toolbox for differential methylation testing from Nanopore methylation calls

description: Additional file 2. Benchmark data. Spreadsheet containing sample names, cell line, and download links for raw data (ONT fast5 files) and for VCF files containing SNVs.
DOI: 10.6084/m9.figshare.14283162
title: Forestry 4.0: a framework for the forest supply chain toward Industry 4.0

description: Abstract: Forest industry plays an important role in global economy and has significant influences in our lives and the environment that we live in. With the rapid advancement of digital technologies and industrial transformations towards Industry 4.0, similar trend has been found in the forest industry and especially on its forest procurement side. Forestry 4.0 has been proposed as research initiatives in recent years. However, publications have largely focused on the digital technologies. This article is aimed at presenting a framework to provide a holistic view of Forestry 4.0 from a forest supply chain perspective. The framework consists of four major components including the digital technologies pertinent to each of the supply chain business activities; the network infrastructure; the next generation system intelligence; and the collaborative forest supply chain digital ecosystem. These components are essential for the forest industry transformation to become truly interconnected among its supply chain actors. Some economic, environmental, and social expected benefits of Forestry 4.0 are discussed as well as potential impacts and challenges.
DOI: 10.6084/m9.figshare.14283162.v1
title: Forestry 4.0: a framework for the forest supply chain toward Industry 4.0

description: Abstract: Forest industry plays an important role in global economy and has significant influences in our lives and the environment that we live in. With the rapid advancement of digital technologies and industrial transformations towards Industry 4.0, similar trend has been found in the forest industry and especially on its forest procurement side. Forestry 4.0 has been proposed as research initiatives in recent years. However, publications have largely focused on the digital technologies. This article is aimed at presenting a framework to provide a holistic view of Forestry 4.0 from a forest supply chain perspective. The framework consists of four major components including the digital technologies pertinent to each of the supply chain business activities; the network infrastructure; the next generation system intelligence; and the collaborative forest supply chain digital ecosystem. These components are essential for the forest industry transformation to become truly interconnected among its supply chain actors. Some economic, environmental, and social expected benefits of Forestry 4.0 are discussed as well as potential impacts and challenges.
DOI: 10.6084/m9.figshare.21623197
title: Effect of primary tumor resection on survival in patients with asymptomatic unresectable metastatic colorectal cancer: a systematic review and meta-analysis

description: It remains controversial whether primary tumor resection (PTR) improves survival in patients with asymptomatic, unresectable metastatic colorectal cancer (mCRC). Therefore, we conducted a meta-analysis to assess the latest evidence on clinical outcomes. We systematically searched PubMed, Web of Science, Cochrane Library, and Embase databases for eligible studies published between database inception and May 2022. RevMan 5.4 and Stata 16.0 were used for the meta-analysis. A total of nine studies were included, including four randomized controlled trials (RCTs) and five retrospective cohort studies. Meta-analysis showed that overall survival (OS) [HR = 0.89, 95%CI (0.74, 1.06), <i>P</i> = 0.19] and progression-free survival (PFS) [HR = 0.87, 95%CI (0.71, 1.06), <i>P</i> = 0.17] were not significantly different between the PTR and non-PTR groups. In the subgroup analysis, all subgroups showed no significant difference in OS between the two groups. PTR may not provide additional survival benefits over chemotherapy in asymptomatic, unresectable mCRC patients. However, in view of the limitations of this study, more well-designed RCTs are needed to validate our conclusions.
DOI: 10.6084/m9.figshare.21623197.v1
title: Effect of primary tumor resection on survival in patients with asymptomatic unresectable metastatic colorectal cancer: a systematic review and meta-analysis

description: It remains controversial whether primary tumor resection (PTR) improves survival in patients with asymptomatic, unresectable metastatic colorectal cancer (mCRC). Therefore, we conducted a meta-analysis to assess the latest evidence on clinical outcomes. We systematically searched PubMed, Web of Science, Cochrane Library, and Embase databases for eligible studies published between database inception and May 2022. RevMan 5.4 and Stata 16.0 were used for the meta-analysis. A total of nine studies were included, including four randomized controlled trials (RCTs) and five retrospective cohort studies. Meta-analysis showed that overall survival (OS) [HR = 0.89, 95%CI (0.74, 1.06), <i>P</i> = 0.19] and progression-free survival (PFS) [HR = 0.87, 95%CI (0.71, 1.06), <i>P</i> = 0.17] were not significantly different between the PTR and non-PTR groups. In the subgroup analysis, all subgroups showed no significant difference in OS between the two groups. PTR may not provide additional survival benefits over chemotherapy in asymptomatic, unresectable mCRC patients. However, in view of the limitations of this study, more well-designed RCTs are needed to validate our conclusions.
DOI: 10.6084/m9.figshare.13225826
title: Additional file 1 of Changes in transcriptomic and metabolomic profiles of morphotypes of Ophiocordyceps sinensis within the hemocoel of its host larvae, Thitarodes xiaojinensis

description: Additional file 1: Table S1. Summary of sequencing quality. Table S2. All differentially expressed genes FPKM value during the deformation process of O. sinensis and gene annotation details. Table S3. KEGG functional classification of differentially expressed genes. Table S4. The detailed information of differentially expressed metabolites in this study. Table S5. Summary of 43 pathways annotated by MetaboAnalyst. Table S6. Results of BLASTp analysis of S. cerevisiae dimorphism related proteins with O. sinensis genome. Table S7. A list of homologous of Hog1 and PKA cascade protein of S. cerevisiae. Table S8. Oligonucleotide primer sequences used in this study.
DOI: 10.6084/m9.figshare.12177504.v1
title: Additional file 6 of Role of the ADCY9 gene in cardiac abnormalities of the Rubinstein-Taybi syndrome

description: Additional file 6 Supplementary Table 2. Differential gene expression analysis comparing zebrafish with or without adcy9 knockdown
DOI: 10.5281/zenodo.10620281
title: Raw Supplementary information for the article "Benzylic C(sp3)-H Azidation: Copper vs Iron Catalysis"

description: Original word file for the supplementary information to the article "Benzylic C(sp3)-H Azidation: Copper vs Iron Catalysis" published in Helvetica Chimica Acta

DOI: http://dx.doi.org/10.1002/hlca.202400004
DOI: 10.5281/zenodo.10620282
title: Raw Supplementary information for the article "Benzylic C(sp3)-H Azidation: Copper vs Iron Catalysis"

description: Original word file for the supplementary information to the article "Benzylic C(sp3)-H Azidation: Copper vs Iron Catalysis" published in Helvetica Chimica Acta

DOI: http://dx.doi.org/10.1002/hlca.202400004
DOI: 10.6084/m9.figshare.12177498
title: Additional file 3 of Role of the ADCY9 gene in cardiac abnormalities of the Rubinstein-Taybi syndrome

description: Additional file 3 Supplementary Table 1. qRT-PCR primers for Zebrafish
DOI: 10.6084/m9.figshare.12177684
title: Additional file 1 of Comparison of choriocapillary flow density between fellow eyes of polypoidal choroidal vasculopathy and neovascular age-related macular degeneration

description: Additional file 1: Table 4. Baseline Demographics and Clinical Characteristics of Subjects. Table 5. Univariate Analysis of Potential Correlation Factors (Age, gender, BCVA, smoking status, hypertension, DM, AREDS classification, and SFCT) With CFD-1.00, CFD-1.50, and CFD-3.00 as dependent variable. Table 6. Multivariate Analysis of Correlation Factors with CFD-1.00, CFD-1.50 and CFD-3.00 as Dependent Variables.