cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26640184
title: Additional file 8 of Long noncoding RNAs emerge from transposon-derived antisense sequences and may contribute to infection stage-specific transposon regulation in a fungal phytopathogen

description: Additional file 8: Supplementary Table 1. General statistics of the RNA-seq datasets generated for this study. Supplementary Table 2. TE composition in the B. hordei DH14 genome based on our manually curated transposon database. Supplementary Table 3. Functional annotations of the proteins encoded by the 43 coding genes newly discovered in the B. hordei genome. Supplementary Table 4. TPM expression values for mRNAs and lncRNAs of B. hordei K1AC during infection of H. vulgare cv. ‘Margret’. Supplementary Table 5. Gene ontology (GO) enrichment of B. hordei mRNAs induced at specific time points of infection. Supplementary Table 6. Gene ontology (GO) enrichment of H. vulgare mRNAs induced at specific time points of infection. Supplementary Table 7. Pearson correlation coefficient table for co-regulation of lncRNAs with mRNAs in B. hordei. Supplementary Table 8. Pearson correlation coefficient table for co-regulation of lncRNAs with consensus TEs in B. hordei. Supplementary Table 9. List of oligonucleotides used for PCR amplification and qRT-PCR.
DOI: 10.6084/m9.figshare.26640184.v1
title: Additional file 8 of Long noncoding RNAs emerge from transposon-derived antisense sequences and may contribute to infection stage-specific transposon regulation in a fungal phytopathogen

description: Additional file 8: Supplementary Table 1. General statistics of the RNA-seq datasets generated for this study. Supplementary Table 2. TE composition in the B. hordei DH14 genome based on our manually curated transposon database. Supplementary Table 3. Functional annotations of the proteins encoded by the 43 coding genes newly discovered in the B. hordei genome. Supplementary Table 4. TPM expression values for mRNAs and lncRNAs of B. hordei K1AC during infection of H. vulgare cv. ‘Margret’. Supplementary Table 5. Gene ontology (GO) enrichment of B. hordei mRNAs induced at specific time points of infection. Supplementary Table 6. Gene ontology (GO) enrichment of H. vulgare mRNAs induced at specific time points of infection. Supplementary Table 7. Pearson correlation coefficient table for co-regulation of lncRNAs with mRNAs in B. hordei. Supplementary Table 8. Pearson correlation coefficient table for co-regulation of lncRNAs with consensus TEs in B. hordei. Supplementary Table 9. List of oligonucleotides used for PCR amplification and qRT-PCR.
DOI: 10.1594/pangaea.663721
title: Oceanography at CTD/bottle station IFREMER_0561
DOI: 10.1594/pangaea.664439
title: Oceanography at CTD/bottle station IFREMER_1279
DOI: 10.6084/m9.figshare.26628667
title: Additional file 2 of Antisense oligonucleotide-based targeting of Tau-tubulin kinase 1 prevents hippocampal accumulation of phosphorylated tau in PS19 tauopathy mice

description: Additional file 2: Table S1. Correlation of tau-phosphorylation and TTBK1 expression in the hippocampus. Table S2. Enriched biological pathways by GSEA analysis. Table S3. Enricher analysis of cell type enrichment.
DOI: 10.1594/pangaea.257970
title: Paleomagnetic of Hole 74-527
DOI: 10.1594/pangaea.744457
title: Physical oceanography during Walther Herwig II cruise WH131/1 to the North Sea
DOI: 10.1594/pangaea.744388
title: Physical oceanography during Thalassa cruise Thalassa88/1 to the North Sea
DOI: 10.1594/pangaea.693609
title: Mesozooplankton average length during Mikhail Lomonosov cruise ML25, Part II

description: Mesozooplankton was sampled by open-closing JUDAY net with a 36 cm ring diameter and mesh size of 0.125 mm. The open-closing mechanism used was the Nansen mechanical lock system allowing nets to be vertically towed through standard depths (0-10, 10-25, 25-50, 50-100, 100-200, 200-300, 300-500 m) and closed at the upper depth level. Depth of tow was evaluated by wire paid out and the angle of wire inclination. The 10-20 ml samples were preserved in 3-4% buffered formaldehyde and processed on return to the laboratory. All of copepods were identified to genus level, other taxanomic groups - to type, class, order and family levels.
DOI: 10.1594/pangaea.693608
title: Mesozooplankton average length during Mikhail Lomonosov cruise ML25, Part I

description: Mesozooplankton was sampled by open-closing JUDAY net with a 36 cm ring diameter and mesh size of 0.125 mm. The open-closing mechanism used was the Nansen mechanical lock system allowing nets to be vertically towed through standard depths (0-10, 10-25, 25-50, 50-100, 100-200, 200-300, 300-500 m) and closed at the upper depth level. Depth of tow was evaluated by wire paid out and the angle of wire inclination. The 10-20 ml samples were preserved in 3-4% buffered formaldehyde and processed on return to the laboratory. All of copepods were identified to genus level, other taxanomic groups - to type, class, order and family levels.
DOI: 10.1594/pangaea.744328
title: Physical oceanography during Scotia cruise Scotia06/3 to the North Sea
DOI: 10.1594/pangaea.771605
title: Physical oceanography during Walther Herwig III cruise WH164
DOI: 10.1594/pangaea.691348
title: Mesozooplankton average mass during Akademik Vernadsky cruise AV9, Part I

description: Mesozooplankton was sampled by open-closing JUDAY net with a 36 cm ring diameter and mesh size of 0.125 mm. The open-closing mechanism used was the Nansen mechanical lock system allowing nets to be vertically towed through standard depths (0-10, 10-25, 25-50, 50-100, 100-200, 200-300, 300-500, 500-1000 m) and closed at the upper depth level. Integrated hauls (0-100, 0-200 m) were also taken. Depth of tow was evaluated by wire paid out and the angle of wire inclination. The 10-20 ml samples were preserved in 3-4% buffered formaldehyde and processed on return to the laboratory. All of copepods were identified to genus level, other taxanomic groups - to type, class, order and family levels.
DOI: 10.1594/pangaea.691351
title: Mesozooplankton average mass during Mikhail Lomonosov cruise ML13, Part II

description: Mesozooplankton was sampled by open-closing JUDAY net with a 36 cm ring diameter and mesh size of 0.125 mm. The open-closing mechanism used was the Nansen mechanical lock system allowing nets to be vertically towed through standard depths (0-10, 10-25, 25-50, 50-100, 100-200, 200-300, 300-500 m) and closed at the upper depth level. Depth of tow was evaluated by wire paid out and the angle of wire inclination. The 10-20 ml samples were preserved in 3-4% buffered formaldehyde and processed on return to the laboratory. All of copepods were identified to genus level, other taxanomic groups - to type, class, order and family levels.
DOI: 10.6084/m9.figshare.26629390
title: Additional file 5 of NR4A1 deletion promotes pro-angiogenic polarization of macrophages derived from classical monocytes in a mouse model of neovascular age-related macular degeneration

description: Additional file 5: Table S3. Differential RNA expression for each cluster from mononuclear phagocytes. Avg_log2FC = log2 fold change, pct.1 = percent of cells in cluster that express the gene, pc.2 = percent of all other cells that express the gene, p_val_adj = adjusted p-value for multiple comparisons, delta.pct = difference between pct.1 and pct.2. exp_”cluster” = average expression of the gene in the cluster, exp_world = average expression of the gene in all other cells.
DOI: 10.1594/pangaea.691361
title: Mesozooplankton average mass during Mikhail Lomonosov cruise ML14, Part V

description: Mesozooplankton was sampled by open-closing JUDAY net with a 36 cm ring diameter and mesh size of 0.125 mm. The open-closing mechanism used was the Nansen mechanical lock system allowing nets to be vertically towed through standard depths (0-10, 10-25, 25-50, 50-100, 100-200, 200-300, 300-500, 500-1000 m) and closed at the upper depth level. Depth of tow was evaluated by wire paid out and the angle of wire inclination. The 10-20 ml samples were preserved in 3-4% buffered formaldehyde and processed on return to the laboratory. All of copepods were identified to genus level, other taxanomic groups - to type, class, order and family levels.
DOI: 10.1594/pangaea.810134
title: (Table 1) Lithology, age, Inoceramus occurrences and preservation at DSDP Holes in the southern Atlantic
DOI: 10.1594/pangaea.771600
title: (Table S1) Silicon isotope and Ge/Si ratios for sponge spicules isolated from sediment core E33-22

description: Age model taken from Nimmermann and Charles (1997), # = averge of duplicate or triplicate analysis, ? = questionable number as it falls off the mass-dependent fraction line for d29Si.
DOI: 10.1594/pangaea.691029
title: Mesozooplankton average length during Akademik Vernadsky cruise AV9, Part II

description: Mesozooplankton was sampled by open-closing JUDAY net with a 36 cm ring diameter and mesh size of 0.125 mm. The open-closing mechanism used was the Nansen mechanical lock system allowing nets to be vertically towed through standard depths (0-10, 10-25, 25-50, 50-100, 100-200, 200-300, 300-500 m) and closed at the upper depth level. Depth of tow was evaluated by wire paid out and the angle of wire inclination. The 10-20 ml samples were preserved in 3-4% buffered formaldehyde and processed on return to the laboratory. All of copepods were identified to genus level, other taxanomic groups - to type, class, order and family levels.
DOI: 10.6084/m9.figshare.24571800
title: Additional file 1 of Identification and validation of autophagy-related genes in primary open-angle glaucoma

description: Additional file 1.
DOI: 10.6084/m9.figshare.24571800.v1
title: Additional file 1 of Identification and validation of autophagy-related genes in primary open-angle glaucoma

description: Additional file 1.
DOI: 10.6084/m9.figshare.24572126
title: Additional file 2 of Identification and validation of autophagy-related genes in primary open-angle glaucoma

description: Additional file 2.
DOI: 10.6084/m9.figshare.24572126.v1
title: Additional file 2 of Identification and validation of autophagy-related genes in primary open-angle glaucoma

description: Additional file 2.
DOI: 10.6084/m9.figshare.26629387.v1
title: Additional file 4 of NR4A1 deletion promotes pro-angiogenic polarization of macrophages derived from classical monocytes in a mouse model of neovascular age-related macular degeneration

description: Additional file 4: Table S2. Differential ADT expression for each cluster from all cells. Avg_log2FC = log2 fold change, pct.1 = percent of cells in cluster that express the gene, pc.2 = percent of all other cells that express the gene, p_val_adj = adjusted p-value for multiple comparisons, delta.pct = difference between pct.1 and pct.2. exp_”cluster” = average expression of the gene in the cluster, exp_world = average expression of the gene in all other cells.
DOI: 10.6084/m9.figshare.26640274.v1
title: Additional file 3 of Identification and validation of autophagy-related genes in primary open-angle glaucoma

description: Additional file 3.
DOI: 10.1594/pangaea.263600
title: Minor-element chemical analyses of Hole 37-335
DOI: 10.6084/m9.figshare.26640274
title: Additional file 3 of Identification and validation of autophagy-related genes in primary open-angle glaucoma

description: Additional file 3.
DOI: 10.6084/m9.figshare.26640277
title: Additional file 4 of Identification and validation of autophagy-related genes in primary open-angle glaucoma

description: Additional file 4.
DOI: 10.6084/m9.figshare.26640277.v1
title: Additional file 4 of Identification and validation of autophagy-related genes in primary open-angle glaucoma

description: Additional file 4.
DOI: 10.6084/m9.figshare.26640280
title: Additional file 5 of Identification and validation of autophagy-related genes in primary open-angle glaucoma

description: Additional file 5.
DOI: 10.6084/m9.figshare.26640280.v1
title: Additional file 5 of Identification and validation of autophagy-related genes in primary open-angle glaucoma

description: Additional file 5.
DOI: 10.15468/dl.gbp6zy
title: Occurrence Download

description: A dataset containing 1042 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 10.7707937545849",
 "DecimalLongitude is less than 10.7738533077693",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1042 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010716-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ppbpss
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriocaulon santapaui Moldenke"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042778-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qvbv8u
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Salix brachista var. brachista"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010730-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9jsyvc
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erythrocephalum minus Oliv."
 ]
}

 The dataset includes 17 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042873-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.clgqd2
title: Occurrence Download

description: A dataset containing 691 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Cerdocyon thous (Linnaeus, 1766)"
 ]
}

 The dataset includes 691 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005339-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n5yum9
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anaphalis viscida (Blume) DC."
 ]
}

 The dataset includes 98 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010751-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j2gxx6
title: Occurrence Download

description: A dataset containing 22562 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Theristicus melanopis (Gmelin, 1789)"
 ]
}

 The dataset includes 22562 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005333-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8rcnwa
title: Occurrence Download

description: A dataset containing 1049 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is Homo sapiens Linnaeus, 1758"
 ]
}

 The dataset includes 1049 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042844-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tq3wxc
title: Occurrence Download

description: A dataset containing 6524 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centropus cupreicaudus Reichenow, 1896",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 6524 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021471-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xqa35j
title: Occurrence Download

description: A dataset listing the 15 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Código de barras de ocho complejos de especies de aves mexicanas"
 ]
}

 The dataset's 15 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005335-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zz46r9
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriocaulon shrirangii Chandore, Borude, Bhalekar, Madhav & Gosavi"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042872-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8iusas
title: Occurrence Download

description: A dataset containing 3370 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-105.32313 16.69825,-98.77159 16.69825,-98.77159 21.33697,-105.32313 21.33697,-105.32313 16.69825))",
 "TaxonKey is one of (Quercus castanea Née, Quercus crassifolia Bonpl., Quercus crassipes Bonpl., Quercus ×crenata Lam., Quercus crispifolia Trel., Quercus crispipilis Trel., Quercus cualensis L.M.González, Quercus cubana A.Rich., Quercus salicifolia Née, Quercus salicina Blume, Quercus saltillensis Trel., Quercus sanchezcolinii Martínez, Quercus sapotifolia Liebm., Quercus saravanensis A.Camus, Quercus schottkyana Rehder & E.H.Wilson, Quercus schultzei Trel., Quercus scytophylla Liebm.)"
 ]
}

 The dataset includes 3370 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005337-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h39vyt
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alyssum montenegrinum (Bald.) Španiel, Lihová & Marhold"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003246-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nzu29z
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macropygia macassariensis Wallace, 1865",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 47 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003251-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sh2e2j
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elatostema subcuspidatum W.T.Wang"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042851-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wz3luu
title: Occurrence Download

description: A dataset containing 2862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "TaxonKey is Melaleuca viridiflora Sol. ex Gaertn."
 ]
}

 The dataset includes 2862 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009619-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfyqfn
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erythrocephalum marginatum (O.Hoffm.) S.Ortiz & A.P.Cout."
 ]
}

 The dataset includes 101 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042864-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aebsk9
title: Occurrence Download

description: A dataset containing 6559 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pterocles burchelli W.L.Sclater, 1922",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 6559 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021545-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a6wttu
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia saligna (Labill.) H.L.Wendl.",
 "Country is South Africa"
 ]
}

 The dataset includes 117 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009620-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwzse5
title: Occurrence Download

description: A dataset containing 307 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erica chamissonis Klotzsch ex Benth."
 ]
}

 The dataset includes 307 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042865-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.37s2mp
title: Occurrence Download

description: A dataset containing 324 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polygonum bellardii All.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 324 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003275-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.