cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3199249
title: Probing cytoskeletal pre-stress and nuclear mechanics in endothelial cells with spatiotemporally controlled (de-)adhesion kinetics on micropatterned substrates

description: The mechanical properties of living cells reflect their propensity to migrate and respond to external forces. Both cellular and nuclear stiffnesses are strongly influenced by the rigidity of the extracellular matrix (ECM) through reorganization of the cyto- and nucleoskeletal protein connections. Changes in this architectural continuum affect cell mechanics and underlie many pathological conditions. In this context, an accurate and combined quantification of the mechanical properties of both cells and nuclei can contribute to a better understanding of cellular (dys-)function. To address this challenge, we have established a robust method for probing cellular and nuclear deformation during spreading and detachment from micropatterned substrates. We show that (de-)adhesion kinetics of endothelial cells are modulated by substrate stiffness and rely on the actomyosin network. We combined this approach with measurements of cell stiffness by magnetic tweezers to show that relaxation dynamics can be considered as a reliable parameter of cellular pre-stress in adherent cells. During the adhesion stage, large cellular and nuclear deformations occur over a long time span (&gt;60 min). Conversely, nuclear deformation and condensed chromatin are relaxed in a few seconds after detachment. Finally, our results show that accumulation of farnesylated prelamin leads to modifications of the nuclear viscoelastic properties, as reflected by increased nuclear relaxation times. Our method offers an original and non-intrusive way of simultaneously gauging cellular and nuclear mechanics, which can be extended to high-throughput screens of pathological conditions and potential countermeasures.
DOI: 10.6084/m9.figshare.3199252.v1
title: data for "Indirect fitness benefits enable the spread of host genes promoting costly transfer of beneficial plasmids"

description: This folder contains raw data from the publication “Indirect fitness benefits enable the spread of host genes promoting costly transfer of beneficial plasmids.” <br>The excel file contains experimental data, ordered per figure. <br>Text files contain simulation data (raw data for Fig 6 and Fig S7 are in file “plasmid_linkage.txt”; raw data for Fig 4, Fig S5 and Fig S10 are in file “poisson.txt”). <br>
DOI: 10.6084/m9.figshare.3199249.v1
title: Probing cytoskeletal pre-stress and nuclear mechanics in endothelial cells with spatiotemporally controlled (de-)adhesion kinetics on micropatterned substrates

description: The mechanical properties of living cells reflect their propensity to migrate and respond to external forces. Both cellular and nuclear stiffnesses are strongly influenced by the rigidity of the extracellular matrix (ECM) through reorganization of the cyto- and nucleoskeletal protein connections. Changes in this architectural continuum affect cell mechanics and underlie many pathological conditions. In this context, an accurate and combined quantification of the mechanical properties of both cells and nuclei can contribute to a better understanding of cellular (dys-)function. To address this challenge, we have established a robust method for probing cellular and nuclear deformation during spreading and detachment from micropatterned substrates. We show that (de-)adhesion kinetics of endothelial cells are modulated by substrate stiffness and rely on the actomyosin network. We combined this approach with measurements of cell stiffness by magnetic tweezers to show that relaxation dynamics can be considered as a reliable parameter of cellular pre-stress in adherent cells. During the adhesion stage, large cellular and nuclear deformations occur over a long time span (&gt;60 min). Conversely, nuclear deformation and condensed chromatin are relaxed in a few seconds after detachment. Finally, our results show that accumulation of farnesylated prelamin leads to modifications of the nuclear viscoelastic properties, as reflected by increased nuclear relaxation times. Our method offers an original and non-intrusive way of simultaneously gauging cellular and nuclear mechanics, which can be extended to high-throughput screens of pathological conditions and potential countermeasures.
DOI: 10.6084/m9.figshare.3198781
title: Li-De Jong-Karreman TC 2015.pdf

description: Compare the user *western and Chinese) preference and perforamnce when they use manuals.
DOI: 10.6084/m9.figshare.3198781.v2
title: Li-De Jong-Karreman TC 2015.pdf

description: Compare the user *western and Chinese) preference and perforamnce when they use manuals.
DOI: 10.6084/m9.figshare.3198763
title: #FORCE2016 Twitter Archive

description: Full download of Tweets for #force2016 hashtag using followthehashtag.com . The twitter hashtag of the Future of Research Communication and e-Scholarship (FORCE 2016) conference. https://www.force11.org/meetings/force2016<br>Should include all archived tweets in the date range below.<br>Total tweets 8308Measured data from 2016-03-28 15:24Measured data to 2016-04-25 08:54<br>For all tweets themselves see the Stream tab of the export_dashboard_force2016_2016_04_25_13_25_57.xlsx file.<br>Also included is a PDF report based on the analysis performed.<br><br><br><br>
DOI: 10.6084/m9.figshare.3198766
title: Diversity of luciferase sequences and bioluminescence production in Baltic Sea <i>Alexandrium ostenfeldii</i>

description: The toxic dinoflagellate <i>Alexandrium ostenfeldii</i> is the only bioluminescent bloom-forming phytoplankton in coastal waters of the Baltic Sea. We analysed partial luciferase gene (<i>lcf</i>) sequences and bioluminescence production in Baltic <i>A. ostenfeldii</i> bloom populations to assess the distribution and consistency of the trait in the Baltic Sea, and to evaluate applications for early detection of toxic blooms. <i>Lcf</i> was consistently present in 61 Baltic Sea <i>A. ostenfeldii</i> strains isolated from six separate bloom sites. All Baltic Sea strains except one produced bioluminescence. In contrast, the presence of <i>lcf</i> and the ability to produce bioluminescence did vary among strains from other parts of Europe. In phylogenetic analyses, <i>lcf</i> sequences of Baltic Sea strains clustered separately from North Sea strains, but variation between Baltic Sea strains was not sufficient to distinguish between bloom populations. Clustering of the <i>lcf</i> marker was similar to internal transcribed spacer (ITS) sequences with differences being minor and limited to the lowest hierarchical clusters, indicating a similar rate of evolution of the two genes. In relation to monitoring, the consistent presence of <i>lcf</i> and close coupling of <i>lcf</i> with bioluminescence suggests that bioluminescence can be used to reliably monitor toxic bloom-forming <i>A. ostenfeldii</i> in the Baltic Sea.
DOI: 10.6084/m9.figshare.3198763.v1
title: #FORCE2016 Twitter Archive

description: Full download of Tweets for #force2016 hashtag using followthehashtag.com . The twitter hashtag of the Future of Research Communication and e-Scholarship (FORCE 2016) conference. https://www.force11.org/meetings/force2016<br>Should include all archived tweets in the date range below.<br>Total tweets 8308Measured data from 2016-03-28 15:24Measured data to 2016-04-25 08:54<br>For all tweets themselves see the Stream tab of the export_dashboard_force2016_2016_04_25_13_25_57.xlsx file.<br>Also included is a PDF report based on the analysis performed.<br><br><br><br>
DOI: 10.6084/m9.figshare.3198766.v1
title: Diversity of luciferase sequences and bioluminescence production in Baltic Sea <i>Alexandrium ostenfeldii</i>

description: The toxic dinoflagellate <i>Alexandrium ostenfeldii</i> is the only bioluminescent bloom-forming phytoplankton in coastal waters of the Baltic Sea. We analysed partial luciferase gene (<i>lcf</i>) sequences and bioluminescence production in Baltic <i>A. ostenfeldii</i> bloom populations to assess the distribution and consistency of the trait in the Baltic Sea, and to evaluate applications for early detection of toxic blooms. <i>Lcf</i> was consistently present in 61 Baltic Sea <i>A. ostenfeldii</i> strains isolated from six separate bloom sites. All Baltic Sea strains except one produced bioluminescence. In contrast, the presence of <i>lcf</i> and the ability to produce bioluminescence did vary among strains from other parts of Europe. In phylogenetic analyses, <i>lcf</i> sequences of Baltic Sea strains clustered separately from North Sea strains, but variation between Baltic Sea strains was not sufficient to distinguish between bloom populations. Clustering of the <i>lcf</i> marker was similar to internal transcribed spacer (ITS) sequences with differences being minor and limited to the lowest hierarchical clusters, indicating a similar rate of evolution of the two genes. In relation to monitoring, the consistent presence of <i>lcf</i> and close coupling of <i>lcf</i> with bioluminescence suggests that bioluminescence can be used to reliably monitor toxic bloom-forming <i>A. ostenfeldii</i> in the Baltic Sea.
DOI: 10.17045/sthlmuni.3198700
title: Data from: Spatial scale and specialization affect how biogeography and functional traits predict long-term patterns of community turnover

description: This is the dataset for the article "Spatial scale and specialization affect how biogeography and functional traits predict long-term patterns of community turnover" by Auffret et al. (2016, Functional Ecology - DOI: 10.1111/1365-2435.12716)<br><br>The data presented include the observations of plant species on 27 islands in the Stockholm archipelago in 1908 and 2008, as well as occurrences from the 2.5 x 2.5 km grid squares regional plant atlas over the same area from both 1929 and 2010. Plant functional trait values (from trait databases), plus biogeographical variables for islands and grid squares are also included.<br><br>Further details are available in the readme file, as well as the original publication.<br><br>Please feel free to get in touch.<br>
DOI: 10.6084/m9.figshare.3190291
title: Codes

description: Every file has an information in itself about what it does
DOI: 10.17045/sthlmuni.3198700.v1
title: Data for: Spatial scale and specialisation affect how biogeography and plant functional traits predict long-term patterns of community turnover

description: This is the dataset for the article "Spatial scale and specialisation affect how biogeography and plant functional traits predict long-term patterns of community turnover" by Auffret et al. (2016, Functional Ecology - DOI: 10.1111/1365-2435.12716)<br><br>The data presented include the observations of plant species on 27 islands in the Stockholm archipelago in 1908 and 2008, as well as occurrences from the 2.5 x 2.5 km grid squares regional plant atlas over the same area from both 1929 and 2010. Plant functional trait values (from trait databases), plus biogeographical variables for islands and grid squares are also included.<br><br>Further details are available in the readme file, as well as the original publication.<br><br>Please feel free to get in touch.<br>
DOI: 10.6084/m9.figshare.3190291.v2
title: Codes

description: Every file has an information in itself about what it does
DOI: 10.17045/sthlmuni.3198700.v2
title: Data for: Spatial scale and specialization affect how biogeography and plant functional traits predict long-term patterns of community turnover

description: This is the dataset for the article "Spatial scale and specialization affect how biogeography and plant functional traits predict long-term patterns of community turnover" by Auffret et al. (2016, Functional Ecology - DOI: 10.1111/1365-2435.12716)<br><br>The data presented include the observations of plant species on 27 islands in the Stockholm archipelago in 1908 and 2008, as well as occurrences from the 2.5 x 2.5 km grid squares regional plant atlas over the same area from both 1929 and 2010. Plant functional trait values (from trait databases), plus biogeographical variables for islands and grid squares are also included.<br><br>Further details are available in the readme file, as well as the original publication.<br><br>Please feel free to get in touch.<br>
DOI: 10.6084/m9.figshare.3190291.v1
title: Codes

description: Every file has an information in itself about what it does
DOI: 10.6084/m9.figshare.3190264
title: How many PLoS ONE papers said "All relevant data are within the paper"

description: Updates:I added a column of the full texts of the data availability statement in each paper. <br>#####################PLoS ONE data availability statement<br>pub_title: Publication titlepub_doi: Publication DOIpub_date: Publication dateresearch_article: Whether it is a research article.data only in paper: Whether the paper says "All relevant data are within the paper."data in paper and supp: Whether the paper says "All relevant data are within the paper and its Supporting Information files."data_availability_st: Full texts of the data availability statement.<br>
DOI: 10.6084/m9.figshare.3190198
title: Supporting information: manuscript

description: This data contains extra calculations do not includes in the paper that justify some of the argumentations and results preseted in the paper<br>
DOI: 10.6084/m9.figshare.3190264.v1
title: PLoS ONE data availability

description: pub_title: Publication titlepub_doi: Publication DOIpub_date: Publication dateresearch_article: Whether it is a research article.data only in paper: Whether the paper says "All relevant data are within the paper."data in paper and supp: Whether the paper says "All relevant data are within the paper and its Supporting Information files."
DOI: 10.6084/m9.figshare.3190165
title: TBHW_FINAL.rec

description: 1. TBHW_FINAL Data base about health-workers during 2014 Ebola outbreak in Guinea. 2. RBPRESUM_FINAL Data about presumptive cases during 2014 Ebola outbreak in Guinea. 3. TBSTOCK_FINAL. Data about stockout during Ebola outbreak in Guinea. 4. TB EVD PATIENTS FINAL. Data on TB patients during Ebola outbreak in Guinea.
DOI: 10.6084/m9.figshare.3190264.v2
title: How many PLoS ONE papers said "All relevant data are within the paper."

description: PLoS ONE data availability<br>pub_title: Publication titlepub_doi: Publication DOIpub_date: Publication dateresearch_article: Whether it is a research article.data only in paper: Whether the paper says "All relevant data are within the paper."data in paper and supp: Whether the paper says "All relevant data are within the paper and its Supporting Information files."
DOI: 10.6084/m9.figshare.3190165.v1
title: TBHW_FINAL.rec

description: 1. TBHW_FINAL Data base about health-workers during 2014 Ebola outbreak in Guinea. 2. RBPRESUM_FINAL Data about presumptive cases during 2014 Ebola outbreak in Guinea. 3. TBSTOCK_FINAL. Data about stockout during Ebola outbreak in Guinea. 4. TB EVD PATIENTS FINAL. Data on TB patients during Ebola outbreak in Guinea.
DOI: 10.6084/m9.figshare.3190198.v2
title: Supporting information: manuscript

description: This data contains extra calculations do not includes in the paper that justify some of the argumentations and results preseted in the paper<br>
DOI: 10.6084/m9.figshare.3190198.v1
title: Supporting information: manuscript

description: This data contains extra calculations do not includes in the paper that justify some of the argumentations and results preseted in the paper<br>
DOI: 10.6084/m9.figshare.3190276.v2
title: S2.

description: Wetting dynamics for sample with high solid surface area fraction.
DOI: 10.6084/m9.figshare.3190264.v3
title: How many PLoS ONE papers said "All relevant data are within the paper"

description: PLoS ONE data availability<br>pub_title: Publication titlepub_doi: Publication DOIpub_date: Publication dateresearch_article: Whether it is a research article.data only in paper: Whether the paper says "All relevant data are within the paper."data in paper and supp: Whether the paper says "All relevant data are within the paper and its Supporting Information files."
DOI: 10.6084/m9.figshare.3190150
title: Project descriptions, midterm and final evaluations from a national government-funded project in Denmark in 2010-2014, Forebyggelsesindsatser i nærmiljøet (Prevention efforts in the local community), where 12 municipalities were involved.

description: The data materials are project descriptions, midterm and final evaluations from a national government-funded project in Denmark in 2010-2014, <i>Forebyggelsesindsatser i nærmiljøet </i>(Prevention efforts in the local community), where 12 municipalities were involved. The project aimed to strengthen health and wellbeing in deprived neighborhoods. The Danish Health Authority committed these municipalities to work with predetermined risk factors of mental health, smoking and physical activity as well as either diet or alcohol use. Testing of methods for recruitment of the marginalized groups was also part of the project’s framework. The types of the interventions were not specified in advance by the Danish Health Authority. Therefore, the project employees had an open framework to shape the local interventions as long as they were aimed at the predetermined risk factors: mental health, smoking, physical activity, and diet or alcohol. The local interventions ranged widely, including exercise classes, smoking cessation courses, cooking teams and other social activities. Other interventions were more creative; for example, one municipality used activities with art to promote mental health. The collected documents consisted of 1,500 pages of written material.
DOI: 10.6084/m9.figshare.3190150.v1
title: FIN data.pdf

description: The data materials are project descriptions, midterm and final evaluations from a national government-funded project in Denmark in 2010-2014, <i>Forebyggelsesindsatser i nærmiljøet </i>(Prevention efforts in the local community), where 12 municipalities were involved. The project aimed to strengthen health and wellbeing in deprived neighborhoods. The Danish Health Authority committed these municipalities to work with predetermined risk factors of mental health, smoking and physical activity as well as either diet or alcohol use. Testing of methods for recruitment of the marginalized groups was also part of the project’s framework. The types of the interventions were not specified in advance by the Danish Health Authority. Therefore, the project employees had an open framework to shape the local interventions as long as they were aimed at the predetermined risk factors: mental health, smoking, physical activity, and diet or alcohol. The local interventions ranged widely, including exercise classes, smoking cessation courses, cooking teams and other social activities. Other interventions were more creative; for example, one municipality used activities with art to promote mental health. The collected documents consisted of 1,500 pages of written material.
DOI: 10.6084/m9.figshare.3190264.v4
title: How many PLoS ONE papers said "All relevant data are within the paper"

description: PLoS ONE data availability<br>pub_title: Publication titlepub_doi: Publication DOIpub_date: Publication dateresearch_article: Whether it is a research article.data only in paper: Whether the paper says "All relevant data are within the paper."data in paper and supp: Whether the paper says "All relevant data are within the paper and its Supporting Information files."
DOI: 10.6084/m9.figshare.3189775
title: QCSsquirelindirecteffctFigshare.xlsx

description: We present here a case study to to measure short-term indirect effects between co-occurring plant species mediated by seed scatter-hoarding rodents in a subtropical forest in Southwest China using a replacement design and tracked the fate of individually-tagged seeds in experimental patches. We manipulated the benefits to rodents by using low-tannin dormant chestnuts (<i>Castanea henryi</i>) as palatable food and high-tannin non-dormant acorns (<i>Quercus variabilis</i>) as unpalatable food.
DOI: 10.6084/m9.figshare.3190150.v2
title: FIN data.pdf

description: The data materials are project descriptions, midterm and final evaluations from a national government-funded project in Denmark in 2010-2014, <i>Forebyggelsesindsatser i nærmiljøet </i>(Prevention efforts in the local community), where 12 municipalities were involved. The project aimed to strengthen health and wellbeing in deprived neighborhoods. The Danish Health Authority committed these municipalities to work with predetermined risk factors of mental health, smoking and physical activity as well as either diet or alcohol use. Testing of methods for recruitment of the marginalized groups was also part of the project’s framework. The types of the interventions were not specified in advance by the Danish Health Authority. Therefore, the project employees had an open framework to shape the local interventions as long as they were aimed at the predetermined risk factors: mental health, smoking, physical activity, and diet or alcohol. The local interventions ranged widely, including exercise classes, smoking cessation courses, cooking teams and other social activities. Other interventions were more creative; for example, one municipality used activities with art to promote mental health. The collected documents consisted of 1,500 pages of written material.
DOI: 10.6084/m9.figshare.3190150.v3
title: FIN data.pdf

description: The data materials are project descriptions, midterm and final evaluations from a national government-funded project in Denmark in 2010-2014, <i>Forebyggelsesindsatser i nærmiljøet </i>(Prevention efforts in the local community), where 12 municipalities were involved. The project aimed to strengthen health and wellbeing in deprived neighborhoods. The Danish Health Authority committed these municipalities to work with predetermined risk factors of mental health, smoking and physical activity as well as either diet or alcohol use. Testing of methods for recruitment of the marginalized groups was also part of the project’s framework. The types of the interventions were not specified in advance by the Danish Health Authority. Therefore, the project employees had an open framework to shape the local interventions as long as they were aimed at the predetermined risk factors: mental health, smoking, physical activity, and diet or alcohol. The local interventions ranged widely, including exercise classes, smoking cessation courses, cooking teams and other social activities. Other interventions were more creative; for example, one municipality used activities with art to promote mental health. The collected documents consisted of 1,500 pages of written material.