cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29219448
title: Additional file 13 of The molecular impact of cigarette smoking resembles aging across tissues

description: Additional File 13: Table S12: TFBSs enrichment of smoking-DMPs and smoking-age-DMPs.
DOI: 10.6084/m9.figshare.29219451
title: Additional file 14 of The molecular impact of cigarette smoking resembles aging across tissues

description: Additional File 14: Table S13: Functional enrichment of smoking-DEGs correlated with smoking-DMPs.
DOI: 10.6084/m9.figshare.29219454.v1
title: Additional file 15 of The molecular impact of cigarette smoking resembles aging across tissues

description: Additional File 15: Table S14: Never smokers vs ex-smokers and ex-smokers vs smokers expression analysis.
DOI: 10.6084/m9.figshare.29219487.v1
title: Additional file 2 of Transcript profiling of plastid ferrochelatase two mutants reveals that chloroplast singlet oxygen signals lead to global changes in RNA profiles and are mediated by Plant U-Box 4

description: Additional file 2: Supplemental information, Tables S1 through S7. Table S1. All differentially expressed genes identified from the RNA-seq data set by pairwise comparisons between mutants and wild type within one condition, Table S2. All differentially expressed genes identified between wt and fc2 under constant light conditions, Table S3. All differentially expressed genes identified between wt and fc2 under cycling light conditions, Table S4. All differentially expressed genes identified between wt and fc2 pub4 under constant light conditions, Table S5. All differentially expressed genes identified between wt and fc2 pub4 under cycling light conditions, Table S6. Gene Ontology term enrichment of DEGs identified between wt and fc2 in constant light conditions, Table S7. Gene Ontology term enrichment of DEGs identified between wt and fc2 in cycling light conditions.
DOI: 10.6084/m9.figshare.29219493
title: Additional file 4 of Transcript profiling of plastid ferrochelatase two mutants reveals that chloroplast singlet oxygen signals lead to global changes in RNA profiles and are mediated by Plant U-Box 4

description: Additional file 4: Supplemental information, Tables S9 through S26. Table S9. Microautophagy (putative) genes analyzed in this study, Table S10. Differentially expressed genes that are unique or shared among fc2 and fc2 pub4, Table S11. Gene Ontology term enrichment of DEGs associated with fc2 pub4 in constant light conditions, Table S12. Gene Ontology term enrichment of DEGs associated with fc2 pub4 in cycling light conditions, Table S13. Differentially Expressed Gene Lists with relaxed cutoffs, Table S14. Identification of differentially expressed transcription factors, Table S15. Quantification of differentially expressed transcription factors among the pairwise comparisons, Table S16. Enrichment analysis of differentially expressed transcription factors, Table S17. Gene ontology term enrichment analysis of differentially expressed transcription factors, Table S18. Transcription factor enrichment analysis of differentially expressed genes, Table S19. Enrichment analysis of transcription factors whose targets are represented in differentially expressed gene lists, Table S20. Comparison of transcription factors (TFs) identified in differentially expressed TF (DETF) and TF enrichment analysis (TFEA), Table S21. The differentially expressed plastid protein-encoding genes identified in the RNA-seq dataset, Table S22. Gene Ontology term enrichment of differentially expressed plastid protein-encoding genes, Table S23. Salicylic acid-related genes analyzed in this study, Table S24. Assessing the salicylic acid transcriptional response in fc2 pub4 mutants, Table S25. Jasmonic acid-related genes analyzed in this study, Table S26. Analysis of the response of senescence-related genes to singlet oxygen stress.
DOI: 10.6084/m9.figshare.29219493.v1
title: Additional file 4 of Transcript profiling of plastid ferrochelatase two mutants reveals that chloroplast singlet oxygen signals lead to global changes in RNA profiles and are mediated by Plant U-Box 4

description: Additional file 4: Supplemental information, Tables S9 through S26. Table S9. Microautophagy (putative) genes analyzed in this study, Table S10. Differentially expressed genes that are unique or shared among fc2 and fc2 pub4, Table S11. Gene Ontology term enrichment of DEGs associated with fc2 pub4 in constant light conditions, Table S12. Gene Ontology term enrichment of DEGs associated with fc2 pub4 in cycling light conditions, Table S13. Differentially Expressed Gene Lists with relaxed cutoffs, Table S14. Identification of differentially expressed transcription factors, Table S15. Quantification of differentially expressed transcription factors among the pairwise comparisons, Table S16. Enrichment analysis of differentially expressed transcription factors, Table S17. Gene ontology term enrichment analysis of differentially expressed transcription factors, Table S18. Transcription factor enrichment analysis of differentially expressed genes, Table S19. Enrichment analysis of transcription factors whose targets are represented in differentially expressed gene lists, Table S20. Comparison of transcription factors (TFs) identified in differentially expressed TF (DETF) and TF enrichment analysis (TFEA), Table S21. The differentially expressed plastid protein-encoding genes identified in the RNA-seq dataset, Table S22. Gene Ontology term enrichment of differentially expressed plastid protein-encoding genes, Table S23. Salicylic acid-related genes analyzed in this study, Table S24. Assessing the salicylic acid transcriptional response in fc2 pub4 mutants, Table S25. Jasmonic acid-related genes analyzed in this study, Table S26. Analysis of the response of senescence-related genes to singlet oxygen stress.
DOI: 10.6084/m9.figshare.29219502.v1
title: Additional file 7 of Transcript profiling of plastid ferrochelatase two mutants reveals that chloroplast singlet oxygen signals lead to global changes in RNA profiles and are mediated by Plant U-Box 4

description: Additional file 7: Supplemental information, Table S29. Table S29. Expression matrix used to generate Differentially Expressed Transcription Factor heatmap
DOI: 10.6084/m9.figshare.29219511
title: Additional file 2 of Differential impacts of physical activity volume and intensity on blood lead levels in children and adolescents: a cross-sectional study

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.29219469.v1
title: Additional file 4 of Global burden of maternal hypertensive disorders (1990–2045): trends, regional disparities, and causal links to occupational exposures

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.29219424
title: Additional file 5 of The molecular impact of cigarette smoking resembles aging across tissues

description: Additional File 5: Table S4: Enrichment analysis of all termsand all Ontologies.
DOI: 10.6084/m9.figshare.29219430
title: Additional file 7 of The molecular impact of cigarette smoking resembles aging across tissues

description: Additional File 7: Table S6: Smoking-DSEs per tissue. It includes a column with the most expressed isoform including and excluding the event and the protein domains where the event is involved for those isoforms.
DOI: 10.6084/m9.figshare.29219442.v1
title: Additional file 11 of The molecular impact of cigarette smoking resembles aging across tissues

description: Additional File 11: Table S10: DMPs per tissue.
DOI: 10.6084/m9.figshare.29219445
title: Additional file 12 of The molecular impact of cigarette smoking resembles aging across tissues

description: Additional File 12: Table S11: Functional enrichments per chromatin region of smoking-DMPs, smoking-age-DMPs, smoking-DMPs without DMPs sitting in TFBSs from Polycomb proteins, and smoking-age-DMPs without DMPs sitting in TFBSs from Polycomb proteins.
DOI: 10.6084/m9.figshare.29219487
title: Additional file 2 of Transcript profiling of plastid ferrochelatase two mutants reveals that chloroplast singlet oxygen signals lead to global changes in RNA profiles and are mediated by Plant U-Box 4

description: Additional file 2: Supplemental information, Tables S1 through S7. Table S1. All differentially expressed genes identified from the RNA-seq data set by pairwise comparisons between mutants and wild type within one condition, Table S2. All differentially expressed genes identified between wt and fc2 under constant light conditions, Table S3. All differentially expressed genes identified between wt and fc2 under cycling light conditions, Table S4. All differentially expressed genes identified between wt and fc2 pub4 under constant light conditions, Table S5. All differentially expressed genes identified between wt and fc2 pub4 under cycling light conditions, Table S6. Gene Ontology term enrichment of DEGs identified between wt and fc2 in constant light conditions, Table S7. Gene Ontology term enrichment of DEGs identified between wt and fc2 in cycling light conditions.
DOI: 10.6084/m9.figshare.29219502
title: Additional file 7 of Transcript profiling of plastid ferrochelatase two mutants reveals that chloroplast singlet oxygen signals lead to global changes in RNA profiles and are mediated by Plant U-Box 4

description: Additional file 7: Supplemental information, Table S29. Table S29. Expression matrix used to generate Differentially Expressed Transcription Factor heatmap
DOI: 10.6084/m9.figshare.29219544
title: Additional file 2 of A comprehensive, multi-center, immunogenomic analysis of melanoma brain metastases

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.29219544.v1
title: Additional file 2 of A comprehensive, multi-center, immunogenomic analysis of melanoma brain metastases

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.29219547
title: Additional file 3 of A comprehensive, multi-center, immunogenomic analysis of melanoma brain metastases

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.29219511.v1
title: Additional file 2 of Differential impacts of physical activity volume and intensity on blood lead levels in children and adolescents: a cross-sectional study

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.29219469
title: Additional file 4 of Global burden of maternal hypertensive disorders (1990–2045): trends, regional disparities, and causal links to occupational exposures

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.29219529
title: Additional file 1 of MDA5 variants trade antiviral activity for protection from autoimmune disease

description: Additional file 1. Detailed fine mapping results for the five diseases analyzed. Each tab shows the fine mapping results for a single disease. The first column lists the chromosomal location and allele of the SNP. The second column shows the posterior inclusion probability (PIP) for the SNP, i.e. the probability this SNP is causal – these probabilities may sum more than 1 over SNPs if there are more than one credible sets. The remaining columns show the posterior probabilities (PP) that the SNP are in the ith credible set, with one column per credible set detected by SuSiE [36–38]. When there is only one credible set then the PIP equals the posterior probability for that credible set; when there is more than one credible set, the PIP is a summary measure over all sets.
DOI: 10.6084/m9.figshare.29219529.v1
title: Additional file 1 of MDA5 variants trade antiviral activity for protection from autoimmune disease

description: Additional file 1. Detailed fine mapping results for the five diseases analyzed. Each tab shows the fine mapping results for a single disease. The first column lists the chromosomal location and allele of the SNP. The second column shows the posterior inclusion probability (PIP) for the SNP, i.e. the probability this SNP is causal – these probabilities may sum more than 1 over SNPs if there are more than one credible sets. The remaining columns show the posterior probabilities (PP) that the SNP are in the ith credible set, with one column per credible set detected by SuSiE [36–38]. When there is only one credible set then the PIP equals the posterior probability for that credible set; when there is more than one credible set, the PIP is a summary measure over all sets.
DOI: 10.6084/m9.figshare.29219541
title: Additional file 1 of A comprehensive, multi-center, immunogenomic analysis of melanoma brain metastases

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.29219541.v1
title: Additional file 1 of A comprehensive, multi-center, immunogenomic analysis of melanoma brain metastases

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.21203308
title: Additional file 10 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 10: Table S8. DE genes of hyperexpanded clones vs. all other clones.
DOI: 10.6084/m9.figshare.21203308.v1
title: Additional file 10 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 10: Table S8. DE genes of hyperexpanded clones vs. all other clones.
DOI: 10.6084/m9.figshare.21203311
title: Additional file 11 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 11: Table S9. Enrichment analysis of DE genes from Table S8.
DOI: 10.6084/m9.figshare.21203311.v1
title: Additional file 11 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 11: Table S9. Enrichment analysis of DE genes from Table S8.
DOI: 10.6084/m9.figshare.21203314
title: Additional file 12 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 12: Table S10. DE genes of hyperexpanded clone after vs. before treatment.
DOI: 10.6084/m9.figshare.21203317
title: Additional file 13 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 13: Table S11. Top markers of the T cell clusters.
DOI: 10.6084/m9.figshare.21203314.v1
title: Additional file 12 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 12: Table S10. DE genes of hyperexpanded clone after vs. before treatment.
DOI: 10.6084/m9.figshare.21203317.v1
title: Additional file 13 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 13: Table S11. Top markers of the T cell clusters.
DOI: 10.6084/m9.figshare.21203320
title: Additional file 14 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 14: Table S12. Published exhaustion gene signatures.
DOI: 10.6084/m9.figshare.21203320.v1
title: Additional file 14 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 14: Table S12. Published exhaustion gene signatures.
DOI: 10.6084/m9.figshare.21203323
title: Additional file 1 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 1: Table S1. Patient demographics and sample characteristics.
DOI: 10.6084/m9.figshare.21203323.v1
title: Additional file 1 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 1: Table S1. Patient demographics and sample characteristics.
DOI: 10.6084/m9.figshare.21203329
title: Additional file 3 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 3: Table S2. List of flow cytometry antibodies.
DOI: 10.6084/m9.figshare.21203329.v1
title: Additional file 3 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 3: Table S2. List of flow cytometry antibodies.
DOI: 10.6084/m9.figshare.21203335
title: Additional file 5 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 5: Table S3. Technical information about scRNA-seq, scBCR-seq, CITE-seq, and spatial transcriptomics.
DOI: 10.6084/m9.figshare.21203335.v1
title: Additional file 5 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 5: Table S3. Technical information about scRNA-seq, scBCR-seq, CITE-seq, and spatial transcriptomics.
DOI: 10.6084/m9.figshare.21203338
title: Additional file 6 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 6: Table S4. Top markers of the general clusters.
DOI: 10.6084/m9.figshare.21203341
title: Additional file 7 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 7: Table S5. Top markers of the B cell clusters.
DOI: 10.6084/m9.figshare.21203341.v1
title: Additional file 7 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 7: Table S5. Top markers of the B cell clusters.
DOI: 10.6084/m9.figshare.21203338.v1
title: Additional file 6 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 6: Table S4. Top markers of the general clusters.
DOI: 10.6084/m9.figshare.21203344
title: Additional file 8 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 8: Table S6. Chemokine interactions in the mBc clusters.
DOI: 10.6084/m9.figshare.21203344.v1
title: Additional file 8 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 8: Table S6. Chemokine interactions in the mBc clusters.
DOI: 10.6084/m9.figshare.21203347
title: Additional file 9 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 9: Table S7. BCR clonotype sequences and frequencies
DOI: 10.6084/m9.figshare.21203347.v1
title: Additional file 9 of Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma

description: Additional file 9: Table S7. BCR clonotype sequences and frequencies
DOI: 10.6084/m9.figshare.29219595.v1
title: Additional file 3 of Maternal and perinatal outcomes of Somali migrant women in comparison to host populations in the Global North: a systematic review and meta-analysis

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.29219598
title: Additional file 4 of Maternal and perinatal outcomes of Somali migrant women in comparison to host populations in the Global North: a systematic review and meta-analysis

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.29219604
title: Additional file 6 of Maternal and perinatal outcomes of Somali migrant women in comparison to host populations in the Global North: a systematic review and meta-analysis

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.29219604.v1
title: Additional file 6 of Maternal and perinatal outcomes of Somali migrant women in comparison to host populations in the Global North: a systematic review and meta-analysis

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.29219547.v1
title: Additional file 3 of A comprehensive, multi-center, immunogenomic analysis of melanoma brain metastases

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.29219595
title: Additional file 3 of Maternal and perinatal outcomes of Somali migrant women in comparison to host populations in the Global North: a systematic review and meta-analysis

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.29219646.v1
title: Additional file 4 of CpG dinucleotide methylation of the SPDEF gene as a blood-based epigenetic biomarker for prostate cancer diagnosis

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.29219658
title: Additional file 1 of Comparative transcriptomic and proteomic analyses of hypoxia response in wild and cultivated tomato roots

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.29219658.v1
title: Additional file 1 of Comparative transcriptomic and proteomic analyses of hypoxia response in wild and cultivated tomato roots

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.29219598.v1
title: Additional file 4 of Maternal and perinatal outcomes of Somali migrant women in comparison to host populations in the Global North: a systematic review and meta-analysis

description: Supplementary Material 4
DOI: 10.15468/dl.w8hgr3
title: Occurrence Download

description: A dataset containing 36448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces Waksman & Henrici, 1943"
 ]
}

 The dataset includes 36448 records from 425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017010-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6mnm8g
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Material sample, Living Specimen, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is Geodetic datum assumed WGS84",
 "OccurrenceStatus is Present",
 "TaxonKey is Coleocephalocereus"
 ]
}

 The dataset includes 113 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025734-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dvqfj5
title: Occurrence Download

description: A dataset containing 4559 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Duguetia surinamensis, Duguetia cauliflora, Duguetia megalocarpa, Duguetia echinophora, Duguetia asterotricha, Duguetia ulei, Duguetia riparia, Duguetia trunciflora, Duguetia chrysea, Duguetia calycina, Duguetia pycnastera, Duguetia flagellaris, Duguetia arenicola, Duguetia manausensis, Duguetia tenuis)",
 "BasisOfRecord is Specimen",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4559 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025735-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48530/isoarch.2025.025
title: Incremental Carbon, Oxygen, and Strontium Isotope Data from Modern and Archaeological Human Canine and Molar Enamel.

description: This dataset contains high-resolution incremental enamel isotope (δ13C, δ18O, and 87Sr/86Sr) and strontium concentration ([Sr]) measurements from 28 human teeth (canines, 1st molars, and 3rd molars) sampled from 10 individuals. Nine individuals derive from a modern forensic context in Belgium, and one from the Bronze Age archaeological site of Staje, Slovenia (748–406 cal BC). The study adapts the Plomp et al. (2020) molar protocol onto first and third molars, incorporating an additional increment near the enamel–root junction, and introduces a new standardised hand-drilled incremental sampling method for canines based on their enamel growth structures. Canines produced up to four minimally overlapping increments, while molars exhibited greater overlap due to complex growth and wear. This dataset supports the development of a replicable, standardised methodology for incremental enamel isotope sampling of human canines, as well as the refinement and increased resolution of incremental enamel sampling of human molars