cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21079648.v1
title: Supplementary Material for: Carotid Artery Stenosis and Progression of Hemispheric Brain Atrophy: The SMART-MR Study

description: <b><i>Introduction:</i></b> It has been hypothesized that carotid artery stenosis (CAS) may lead to greater atrophy of subserved brain regions; however, prospective studies on the impact of CAS on progression of hemispheric brain atrophy are lacking. We examined the association between CAS and progression of hemispheric brain atrophy. <b><i>Methods:</i></b> We included 654 patients (57 ± 9 years) of the SMART-MR study, a prospective cohort study of patients with manifest arterial disease. Patients had baseline CAS duplex measurements and a 1.5T brain MRI at baseline and after 4 years of follow-up. Mean change in hemispheric brain volumes (% of intracranial volume [ICV]) was estimated between baseline and follow-up for left-sided and right-sided CAS across three degrees of stenosis (mild [≤29%], moderate [30–69%], and severe [≥70%]), adjusting for demographics, cerebrovascular risk factors, and brain infarcts. <b><i>Results:</i></b> Mean decrease in left and right hemispheric brain volumes was 1.15% ICV and 0.82% ICV, respectively, over 4 years of follow-up. Severe right-sided CAS, compared to mild CAS, was associated with a greater decrease in volume of the left hemisphere (B = −0.49% ICV, 95% CI: −0.86 to −0.13) and more profoundly of the right hemisphere (B = −0.90% ICV, 95% CI: −1.27 to −0.54). This pattern was independent of cerebrovascular risk factors, brain infarcts, and white matter hyperintensities on MRI, and was also observed when accounting for the presence of severe bilateral CAS. Increasing degrees of left-sided CAS, however, was not associated with greater volume loss of the left or right hemisphere. <b><i>Conclusions:</i></b> Our data indicate that severe (≥70%) CAS could represent a risk factor for greater ipsilateral brain volume loss, independent of cerebrovascular risk factors, brain infarcts, or white matter hyperintensities on MRI. Further longitudinal studies in other cohorts are warranted to confirm this novel finding.
DOI: 10.6084/m9.figshare.24849318.v1
title: <b> </b><b>Association</b><b> between maternal </b><b>copper</b><b>/zinc intake and risk of </b><b>preterm birth</b>

description: <b>关联</b><b> 母亲</b><b>铜</b><b>/锌摄入量与</b><b>preterm birth</b>
DOI: 10.6084/m9.figshare.3527996.v1
title: Supplement 1. WinBUGS model specification for European Crossbill and Cerulean Warbler examples in the paper.

description: File List crossbill.txt -- Crossbill example cerulean.txt -- Cerulean Warbler example<br> Description The file crossbill.txt contains the WinBUGS model specification for the Crossbill example in which the model parameters (detection probability, survival, and colonization) are all year-specific. The following variables in the model specification are data that must be supplied by the user: y[i,j,t] are the observations, referenced by a three-dimensional array with indices i (site), j (rep), and t (year). nyear : number of years of data (or primary periods) nsite : number of sites or sample locations nrep : number of replicates per secondary period (within years) The interested reader can consult the WinBUGS manual for formatting data for input into WinBUGS. The authors used the R library R2WinBUGS. <br> <br> The file cerulean.txt contains the WinBUGS model specification for the Cerulean Warbler example in the paper. In this example, heterogeneity in model parameters among sites was allowed, in addition to yearly variation. The data structure is slightly different than in the previous example as they are the number of detections per sample unit per year (i.e., summed over all nrep secondary samples). x[i,t] are the observations, referenced by a two-dimensional matrix with indices i (site), and t (year). The model assumes that these are binomial counts based on a sample size of 50 (the number of replicate samples, or sub-samples along the BBS route) nyear : number of years of data (or primary periods) nsite : number of sites or sample locations
DOI: 10.17632/22v3kcgks3
title: Event Extraction Andersen's Fairy Tales

description: The data collection process consisted of compiling texts from three main online platforms: Project Gutenberg (https://www.gutenberg.org/cache/epub/1597/pg1597-images.html ), Andersen Stories (https://www.andersenstories.com/en/andersen_fairy-tales/list ), and the HCA Gilead website (http://hca.gilead.org.il/ ). These resources offered digitized editions of Hans Christian Andersen’s fairy tales, including multiple translations and versions. The texts were gathered using web scraping and text extraction methods. Python tools such as BeautifulSoup were utilized to extract content from HTML, while Pandas was used for organizing and cleaning the collected data. The selection criteria emphasized the relevance to Andersen’s original stories, availability in English, and the completeness of the texts. To normalize the data, HTML tags were removed, titles were made consistent, and the texts were divided into sentences or organized into structured formats based on events (Subject-Verb-Object-Temporal-Location). The datasets are freely available and legally sourced from open-domain websites that offer unrestricted access to literary works, ensuring adherence to copyright and usage regulations.
DOI: 10.17632/fctms83pch
title: An electronic nose combined with qualitative-quantitative two-stage hybrid modeling for microbial quantitative prediction in automotive air conditioners

description: This is electronic nose response of automotive air conditioning filters sample.Electronic nose response results in a matrix:25(number of sensors)*6000(60s*100HZ).
DOI: 10.17632/xbx248k5ft
title: DYRK1A-TGFβ Signaling Axis Determines Sensitivity to OXPHOS Inhibition in Hepatocellular Carcinoma

description: Intervening in mitochondrial OXPHOS has emerged as a potential therapeutic strategy for certain types of cancers. Employing kinome-based CRISPR screen, we find that knockout of DYRK1A synergizes with OXPHOS inhibitor IACS-010759 in liver cancer cells. Targeting DYRK1A combined with OXPHOS inhibitors activates TGFβ signaling, which is crucial for OXPHOS inhibition-triggered cell death. Mechanistically, upregulation of glutamine transporter SLC1A5 transcription compensates for the increased glutamine requirement upon OXPHOS inhibition. DYRK1A directly phosphorylates SMAD3 Thr132, thereby suppressing the negative impact of TGFβ signaling on transcription of SLC1A5, leading to intrinsic resistance of liver cancer cells to OXPHOS inhibition. Moreover, we demonstrate the therapeutic efficacy of IACS-010759 in combination with DYRK1A inhibition in multiple liver cancer models, including xenograftes, patient-derived xenograftes and spontaneous tumor model. Our study elucidates how the DYRK1A-TGFβ signaling axis controls the response of tumor cells to OXPHOS inhibition and provides valuable insights into targeting OXPHOS for liver cancer therapy.
DOI: 10.6084/m9.figshare.11734581.v1
title: SHA256 CHECK SUM

description: SHA256 CHECK SUM
DOI: 10.6084/m9.figshare.24207429.v5
title: Princeton RAtlas (PRA)

description: These data are described in Dennis EJ et al 2023 published in Bio-Protocol. Briefly, this is a tiff image stack of sagittal slices of an average brain of multiple Rattus norvegicus rats and serves as a common coordinate framework for rat researchers. mPRA is only male brains, defined by external genitalia (testes, penis). fPRA uses the same definition, but a lack of testes or penis.
DOI: 10.6084/m9.figshare.25244926.v1
title: Study1IPVAW

description: This article presents two cross-sectional studies that group the most relevant (and potential) factors contemplated in IPVAW bystander literature to analyse their relationship with the intention to respond to hypothetical scenarios with specific helping behaviours (study 1) and as predictors of helping behaviours (study 2).
DOI: 10.6084/m9.figshare.28768619.v1
title: <i>Staphylococcus aureus </i>panRG

description: A pre-built panRG for <i>Staphylococcus aureus</i><i> </i>for use with Amira.
DOI: 10.17632/2s7j6z9439
title: CAI_DATA

description: All data for this study are provided.
DOI: 10.17632/vkxmd63vkc
title: Risk of recurrent herpes zoster in a population-based cohort study of older adults

description: Appendix
DOI: 10.6084/m9.figshare.14685882.v1
title: Dataset 17 poultry breeds.pdf

description: 14 microsatellite genotype of 645 individuals belong 17 Italian checken breeds
DOI: 10.6084/m9.figshare.1598239.v1
title: Separate Spheres Model of Gendered Inequality

description: These studies validate a scale that measures individuals' endorsement of the separate spheres ideology.
DOI: 10.6084/m9.figshare.19885720.v2
title: Male swamp buffalo

description: The genome and annotation of the male swamp buffalo.
DOI: 10.6084/m9.figshare.9923759.v1
title: Supplementary Material for: Unit-Level Variations in Healthcare Professionals’ Availability for Preterm Neonates &lt;29 Weeks’ Gestation: An International Survey

description: <b><i>Introduction:</i></b> The availability of and variability in healthcare professionals in neonatal units in different countries has not been well characterized. Our objective was to identify variations in the healthcare professionals for preterm neonates in 10 national or regional neonatal networks participating in the International Network for Evaluating Outcomes (iNeo) of neonates. <b><i>Method:</i></b> Online, pre-piloted questionnaires about the availability of healthcare professionals were sent to the directors of 390 tertiary neonatal units in 10 international networks: Australia/New Zealand, Canada, Finland, Illinois, Israel, Japan, Spain, Sweden, Switzerland, and Tuscany. <b><i>Results:</i></b> Overall, 325 of 390 units (83%) responded. About half of the units (48%; 156/325) cared for 11–30 neonates/day and had team-based (43%; 138/325) care models. Neonatologists were present 24 h a day in 59% of the units (191/325), junior doctors in 60% (194/325), and nurse practitioners in 36% (116/325). A nurse-to-patient ratio of 1:1 for infants who are unstable and require complex care was used in 52% of the units (170/325), whereas a ratio of 1:1 or 1:2 for neonates requiring multisystem support was available in 59% (192/325) of the units. Availability of a respiratory therapist (15%, 49/325), pharmacist (40%, 130/325), dietitian (34%, 112/325), social worker (81%, 263/325), lactation consultant (45%, 146/325), parent buddy (6%, 19/325), or parents’ resource personnel (11%, 34/325) were widely variable between units. <b><i>Conclusions:</i></b> We identified variability in the availability and organization of the healthcare professionals between and within countries for the care of extremely preterm neonates. Further research is needed to associate healthcare workers’ availability and outcomes.
DOI: 10.15482/usda.adc/1529411
title: Growth and Yield Data for the Bushland, Texas, Sorghum Datasets

description: This dataset consists of growth and yield data for each season when sorghum [Sorghum bicolor (L.)] was grown at the USDA-ARS Conservation and Production Laboratory (CPRL), Soil and Water Management Research Unit (SWMRU) research weather station, Bushland, Texas (Lat. 35.186714°, Long. -102.094189°, elevation 1170 m above MSL). In the 1988, 1991, 1993, 1997, 1998, 1999, 2003 through 2007, 2014, and 2015 seasons (13 years), sorghum was grown on from one to four large, precision weighing lysimeters, each in the center of a 4.44 ha square field also planted to sorghum. The square fields were themselves arranged in a larger square with four fields in four adjacent quadrants of the larger square. Fields and lysimeters within each field were thus designated northeast (NE), southeast (SE), northwest (NW), and southwest (SW). Sorghum was grown on different combinations of fields in different years. When irrigated, irrigation was by linear move sprinkler system years before 2014, and by both sprinkler and subsurface drip irrigation in 2014 and 2015. Irrigation protocols described as full were managed to replenish soil water used by the crop on a weekly or more frequent basis as determined by soil profile water content readings made with a neutron probe to 2.4-m depth in the field. Irrigation protocols described as deficit typically involved irrigation at rates established as percentages of full irrigation ranging from 33% to 75% depending on the year.
The growth and yield data include plant population density, height, plant row width, leaf area index, growth stage, total above-ground biomass, leaf and stem biomass, head mass (when present), seed mass, and final yield. Data are from replicate samples in the field and non-destructive (except for final harvest) measurements on the weighing lysimeters. In most cases yield data are available from both manual sampling on replicate plots in each field and from machine harvest. Machine harvest yields are commonly smaller than hand harvest yields due to combine losses.
These datasets originate from research aimed at determining crop water use (ET), crop coefficients for use in ET-based irrigation scheduling based on a reference ET, crop growth, yield, harvest index, and crop water productivity as affected by irrigation method, timing, amount (full or some degree of deficit), agronomic practices, cultivar, and weather. Prior publications have focused on sorghum ET, crop coefficients, crop water productivity, and simulation modeling of crop water use, growth, and yield. Crop coefficients have been used by ET networks. The data have utility for testing simulation models of crop ET, growth, and yield and have been used for testing, and calibrating models of ET that use satellite and/or weather data.
See the README for descriptions of each data file.
DOI: 10.17632/k7xk2nwgrh
title: Medjool-date images

description: Medjool dates are primum dates which require thinning. Images of Medjool date fruit-bunches were taken as part of a large scale project for developing a robotic Medjool thinning system. The images were used for determining required robotic motion parameters. Each fruit-bunch includes a rachis and spikelets. The database includes two files:

images.zip - 146 images of fruit-bunches from 13 Medjool date palms. The images were taken in 2019 from two Medjool farms in the Southern Arava region of Israel during the beginning and middle of the thinning period. The images were acquired with a digital single-lens reflex (DSLR) camera (NIKON D5600, USA) with a resolution of 4000×6000 pixels.

masks_npz_2cl.zip - Ground truth masks for two classes (spikelets and rachis) manually annotated for all the fruit-bunches in each image in npz format. Each mask is a 4000×6000×N matrix (where N is the number of ground truth instances of spikelets and rachises, in the image) so that each instance is documented in a separate 4000×6000×1 binary mask. The masks are sequentially ordered such that a mask of the rachis follows the mask of the spikelets. An empty mask is defined in case the rachis was not visible (spikelets were always visible).  

Please cite : Shoshan, T., Bechar, A., Cohen, Y. et al. Segmentation and motion parameter estimation for robotic Medjoul-date thinning. Precision Agric (2021). https://doi.org/10.1007/s11119-021-09847-2
DOI: 10.17632/pwfwystb6y
title: Trace elements and organochlorines concentration in fish samples from Citarum Basin

description: Trace elements and organochlorines concentration in fish samples from Citarum Basin (mg/kg ww)
DOI: 10.17632/zjy2hs3642
title: JDS 22 Kebreab

description: 1. Model-based expected relative mean difference (MD) in CH4 production (g/d) for indicative values of NDF and crude fat content and 2 doses of 3-nitrooxypropanol (3-NOP).
2. Correlations of nutritional components considered in the analyses
DOI: 10.6084/m9.figshare.13263872.v1
title: Local area estimates of Australia's sexual minority population

description: These population estimates by sexual identity accompany the paper "Local area estimates and geographical patterns of Australia’s sexual minority population". They consist of SA3 area usually resident populations at 30th June 2016 and are consistent with ABS Estimated Resident Populations for that date. Be aware that these are approximate estimates, not precise counts. Please refer to the paper for details of the strengths and weaknesses of the data. It is recommended that these estimates are rounded to the nearest 100 and reported as "approximate estimates".
DOI: 10.6084/m9.figshare.16628914.v1
title: Supplementary Material.pdf

description: Supplementary Information for NP-P200877 (https://doi.org/10.1038/s41596-021-00662-7)
DOI: 10.6084/m9.figshare.19103084.v1
title: Changes in gene expression in cells cultured in HGm or adapted to LGm or OXPHOSm - Correlations.

description: Expression of several metabolism-related transcripts in NHDF cells grown in HGm and adapted to LGm or OXPHOSm.<br>
DOI: 10.6084/m9.figshare.28522406.v1
title: Supplementary Information for - Evolution of pneumococcal serotype 19A in Bangladesh: insights from genomic analysis

description: <b>Abstract</b><b>Background </b>Invasive pneumococcal disease (IPD), caused by <i>Streptococcus pneumoniae</i>, remains a major global health concern, particularly for children. Among more than 100 pneumococcal serotypes, 19A is known for its multidrug resistance and increased incidence following PCV7/PCV10 introduction in many countries. Bangladesh introduced PCV10 nationwide in 2015 considering the low burden of 19A, and hence, continuous monitoring of the serotype is required.<br><b>Methods</b>Utilizing the IPD surveillance data from 2004 to 2023 in Bangladesh, we investigated the incidence of serotype 19A before and after PCV10 introduction. Whole-genome sequencing was performed on 153 pneumococcal 19A isolates from IPD, otitis media, nasopharyngeal carriage, and urine samples. Using phylogenetic and BEAST analyses, we evaluated the population structure of 19A in Bangladesh, including circulating subtypes, global pneumococcal sequence clusters (GPSCs), sequence types (STs), and antimicrobial resistance (AMR) genes, and compared these findings with 19A genomes available from other countries.<br><b>Results</b>Our findings indicate no significant increase in hospital IPD incidence due to serotype 19A following the introduction of PCV10. The MDR 19A-ST320 lineage (GPSC1) remains absent in Bangladesh. ST12888 (GPSC84) appear to have become dominant after PCV10 introduction, rising from 15% (8/53) to 70% (70/100) in the post-PCV10 era. GPSC84 possesses a capsular locus of 19A subtype I (19A-I), which emerged independently from the standard 19A locus. Macrolide resistance within the 19A-I/GPSC84 lineage was also observed and is estimated to have originated between 2007-2011. The diverse distribution of GPSCs and STs detected in Bangladesh is distinct from other countries.<br><b>Conclusion</b>This study presents the first comprehensive genomic analysis of the serotype 19A population in Bangladesh, supporting the decision to introduce PCV10 in Bangladesh based on local pneumococcal serotype burden data. However, the rapid evolution within the local 19A population highlights the need for continuous epidemiological and genomic surveillance to support effective vaccination programs.
DOI: 10.6084/m9.figshare.28553795.v1
title: Supplementary Material for: Downregulation of Signal Transducer and Activator of Transcription 4 (STAT4) contributes to impaired osteogenic differentiation of human bone marrow stem cells (hBMSCs) during in vitro expansion

description: Introduction: In vitro expansion of primary human bone marrow stem cells (hBMSCs) is necessary to obtain sufficient cells for therapeutic uses. Unfortunately, hBMSCs rapidly lose their osteogenic differentiation potential during expansion, significantly limiting their applications. Signal transducer and activator of transcription 4 (STAT4) is known to play roles in cell migration, proliferation, and differentiation. This study aims to determine the expression and the role of STAT4 during the expansion of hBMSCs. Methods: STAT4 expression in different passages of hBMSCs was evaluated using qRT-PCR and Western blotting. RNA interference and adeno-associated virus serotype 2 (AAV2)-mediated gene overexpression were employed to assess the function of STAT4. RNA samples from STAT4-overexpressing hBMSCs were analyzed by RNA-seq to identify differentially expressed genes (DEGs), followed by bioinformatics analyses to determine the pathways affected by STAT4. Results: STAT4 expression progressively decreases during the in vitro expansion of hBMSCs, concomitant with the loss of osteogenic differentiation potential. STAT4 knockdown in early passage hBMSCs significantly inhibits their osteogenic differentiation, evidenced by markedly reduced calcium deposition and downregulation of osteogenic markers. STAT4 knockdown also reduces hBMSCs’ proliferation ability. Conversely, STAT4 overexpression notably increases calcium deposition in passage 3 to passage 7 cells, suggesting that enhanced STAT4 expression can mitigate the loss of osteogenic potential during hBMSC expansion. Transcriptomic analysis revealed DEGs in STAT4-overexpressing hBMSCs. Subsequent bioinformatics analyses indicated that some of these DEGs are involved in pathways regulating cell differentiation and senescence. Conclusion: The in vitro expansion of hBMSCs leads to the downregulation of STAT4, which contributes to the impairment of their osteogenic potential and may affect cell self-renewability. This study provides insight into the molecular mechanisms underlying the loss of osteogenic differentiation during hBMSC expansion and identifies STAT4 as a potential target for hBMSC-based bone regeneration therapies.
DOI: 10.6084/m9.figshare.28923881.v1
title: Virus reduction by chitosan coagulation

description: This is the required available data set accompanying the manuscript:Removal of Surrogate Viruses from Water Using Chitosan CoagulationAmpai Soros , Emily S. Bailey , James E. Amburgey , Mark Sobsey , and Lisa Casanova<sup>PLOS Water, accepted for publication May 2025</sup>
DOI: 10.17632/6zcpgchvmx
title: tamil-handwritten-character-carpus 

description: Tamils account for more than 20% of the population in India, making them one of the largest linguistic groups in the country. Tamil is the official language of Sri Lanka, spoken by nearly 75% of the population. In 2004 Tamil was declared a classical language of India, meaning that it met three criteria: its origins are ancient, it has an independent tradition, and it possesses a considerable body of ancient literature. In the early 21st century, more than 66 million people were Tamil speakers. Tamil handwritten character recognition satisfies the demand for converting ancient Tamil manuscripts into inscriptions, palm leaves, and copperplates. One major challenge with Tamil OCR is the lack of a complete and balanced dataset for all the alphabets in a different century. This dataset is developed to satisfy this need.

This Tamil handwritten dataset is developed by acquiring the samples from B. Tech students of SASTRA deemed University.  The steps involved are,
1) Collect data samples in the Tamil language from B.Tech students from SASTRA University.
2) Python Code for removing Borders - By converting the pages with borders used for recording data into Negatives and then removing the vertical and horizontal lines
and converting it back into pages without borders.
3) Using Pine tools - Image Splitter splits the image into equal rows and columns. In this case, 19 rows and 13 columns, respectively.
4) Using Red Ketchup tools -  Converting images into PNG format with a 300x300*3 resolution.
5) Using Bulk Utility Renamer - to rename the folders in bulk and used for much better clarity and understanding to map the alphabets and their respective folder numbers.