cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11075018
title: Human Pose Estimation for Explainable Corrective Feedbacks in Office Spaces

description: Dataset for the paper:  Human Pose Estimation for Explainable Corrective Feedbacks in Office SpacesReproducibility code of the paper with info about the dataset: GithubZip strutures:archives_data_posture_correction│   ├───keypoints│       ap_1_250.jpg.npy│        ...│        ...│       ms_3_51581.jpg.npy│       ├───keypoints_augmented│       augmented_ap_1_250.jpg.npy│        ...│        ...│       augmented_ms_3_51581.jpg.npy│       └───labels    └───result            labels_for_train.csvNote: The dataset contains only the keypoints extracted with the relative Human Pose Estimation Model used in the research paper
DOI: 10.15468/dl.mdfkjv
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is Desmodium appressipilum B.G.Schub."
 ]
}

 The dataset includes 26 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107849-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13499617
title: ДОРИВОР ЎСИМЛИКЛАРНИ АСОСИЙ КАСАЛЛИКЛАРИ ВА УЛАРНИ ТАРҚАЛИШИ.
DOI: 10.5281/zenodo.13499618
title: ДОРИВОР ЎСИМЛИКЛАРНИ АСОСИЙ КАСАЛЛИКЛАРИ ВА УЛАРНИ ТАРҚАЛИШИ.
DOI: 10.15468/dl.exrry3
title: Occurrence Download

description: A dataset containing 2435561 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (French Guiana, Martinique, Guadeloupe, Saint Pierre and Miquelon, Saint Martin (French part), Mayotte, Réunion, French Polynesia, French Southern Territories, New Caledonia, Wallis and Futuna)",
 "OccurrenceStatus is Present",
 "Year 2010-2024"
 ]
}

 The dataset includes 2435561 records from 1548 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107841-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9dm4e3
title: Occurrence Download

description: A dataset containing 168 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Numenius arquata arquata",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 168 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107852-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5683/sp2/k8czub
title: Characterization of fecal microbiota in horses medicated with oral doxycycline hyclate

description: This study evaluated the impact of oral doxycycyline on the fecal microbiota of healthy adult horses.
DOI: 10.5281/zenodo.13377198
title: Dual structure of a vanadyl-based molecular qubit containing a bis(β-diketonato) ligand. Open dataset

description: Data supporting the original figures 2, 4, 6, and 7 of the related publication
DOI: 10.5281/zenodo.13377199
title: Dual structure of a vanadyl-based molecular qubit containing a bis(β-diketonato) ligand. Open dataset

description: Data supporting the original figures 2, 4, 6, and 7 of the related publication
DOI: 10.5281/zenodo.13384493
title: Dual structure of a vanadyl-based molecular qubit containing a bis(β-diketonato) ligand. Open dataset

description: Data supporting the original figures 2, 4, 6, and 7 of the related publication
DOI: 10.25345/c5j38kv8n
title: MassIVE MSV000095723 - Protein profile of extracellular vesicles derived from adult Parascaris spp.
title: Proteomic analysis of extracellular vesicles released by adult males and females Parascaris spp.
DOI: 10.5281/zenodo.13373439
title: DMS measurements dataset for manuscript "Classification of Volatile Organic Compounds by Differential Mobility Spectrometry Based on Continuity of Alpha Curves"

description: Differential mobility spectrometry dispersion plots collected for the manuscrit "Classification of Volatile Organic Compounds by Differential Mobility Spectrometry Based on Continuity of Alpha Curves". The measurement files are located in the folders that represent certain week and day of measurement. The folders containing measurements are named with the following pattern: [chemical abbreviation]_[dilution rate]. For example "2PEtOH_1o10k" means that the folder contains measurement of 2-phenylethanol diluted with propylene glycol in volumetric proportion 1/10 000. Another example is "nBuOH_1o100" - n-Butanol diluted with propylene glycol in volumetric proportion 1/100. Please find the abbreviations in the article referred.

For the first five weeks only 1/100 dilutions were measured. The last two weeks (weeks 6 and 7) 1/10 000 dilutions were measured. However, Carvone 1/100 was measured again on week 6 due to suspicion of faulty measurements during the previous weeks. The faulty measurements were not confirmed, and thus there 25 more samples of Carvone with dilution rate 1/100.
DOI: 10.5281/zenodo.13373440
title: DMS measurements dataset for manuscript "Classification of Volatile Organic Compounds by Differential Mobility Spectrometry Based on Continuity of Alpha Curves"

description: Differential mobility spectrometry dispersion plots collected for the manuscrit "Classification of Volatile Organic Compounds by Differential Mobility Spectrometry Based on Continuity of Alpha Curves". The measurement files are located in the folders that represent certain week and day of measurement. The folders containing measurements are named with the following pattern: [chemical abbreviation]_[dilution rate]. For example "2PEtOH_1o10k" means that the folder contains measurement of 2-phenylethanol diluted with propylene glycol in volumetric proportion 1/10 000. Another example is "nBuOH_1o100" - n-Butanol diluted with propylene glycol in volumetric proportion 1/100. Please find the abbreviations in the article referred.

For the first five weeks only 1/100 dilutions were measured. The last two weeks (weeks 6 and 7) 1/10 000 dilutions were measured. However, Carvone 1/100 was measured again on week 6 due to suspicion of faulty measurements during the previous weeks. The faulty measurements were not confirmed, and thus there 25 more samples of Carvone with dilution rate 1/100.
DOI: 10.25966/tvye-n402
title: Transcriptomic analysis of spleens from mice subjected to chronic low-dose radiation, hindlimb unloading or a combination of both

description: The purpose of this study was to evaluate transcriptional changes in mouse spleens using a ground-based model for spaceflight. This model includes prolonged unloading and low-dose irradiation. Low-dose-rate gamma-radiation was delivered to 6-month old female C57BL/6J mice using 57Co plates (0.04 Gy) to simulate the radiation environment of spaceflight. Anti-orthostatic tail suspension was used to model the unloading, fluid shift, and physiological stress aspects of the microgravity component of spaceflight. Mice were hindlimb suspended and/or irradiated for 21 days. Mice were euthanized and spleens collected 7 days following treatment. RNA sequencing data was generated to assess transcriptional changes in these spleens.
DOI: 10.15468/dl.yr7tab
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Limnoperna fortunei (Dunker, 1857)"
 ]
}

 The dataset includes 58 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107853-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13494673
title: An Inductive Analysis of the Kremlin's Weaponization of Digital Diplomacy on Telegram

description: This dataset accompanies the paper "An Inductive Analysis of the Kremlin's Weaponization of Digital Diplomacy on Telegram" 

The file '4cat_data.csv' contains the original data for the 129 Telegram channels analysed in the paper, as scraped through the 4cat capture and analysis toolkit. 

The file embassy_topic_model_70.zip contains the topic model that was created from the Telegram messages, along with additional documentation and visualizations of the model.
DOI: 10.5281/zenodo.13494674
title: An Inductive Analysis of the Kremlin's Weaponization of Digital Diplomacy on Telegram

description: This dataset accompanies the paper "An Inductive Analysis of the Kremlin's Weaponization of Digital Diplomacy on Telegram" 

The file '4cat_data.csv' contains the original data for the 129 Telegram channels analysed in the paper, as scraped through the 4cat capture and analysis toolkit. 

The file embassy_topic_model_70.zip contains the topic model that was created from the Telegram messages, along with additional documentation and visualizations of the model.
DOI: 10.6084/m9.figshare.19728392.v1
title: Additional file 6 of Identification and validation of an epigenetically regulated long noncoding RNA model for breast cancer metabolism and prognosis

description: Additional file 6: Table S6. GO biological processes related to the 14 potential lncRNA biomarkers.
DOI: 10.6084/m9.figshare.19728395
title: Additional file 7 of Identification and validation of an epigenetically regulated long noncoding RNA model for breast cancer metabolism and prognosis

description: Additional file 7: Table S7. KEGG pathways associated with the 14 potential lncRNA biomarkers.
DOI: 10.6084/m9.figshare.19728395.v1
title: Additional file 7 of Identification and validation of an epigenetically regulated long noncoding RNA model for breast cancer metabolism and prognosis

description: Additional file 7: Table S7. KEGG pathways associated with the 14 potential lncRNA biomarkers.
DOI: 10.6084/m9.figshare.24971286
title: Additional file 1 of Association of lymphocyte subsets and cytokines with bone metabolism: a retrospective, cross-sectional study

description: Additional file 1.
DOI: 10.6084/m9.figshare.24971286.v1
title: Additional file 1 of Association of lymphocyte subsets and cytokines with bone metabolism: a retrospective, cross-sectional study

description: Additional file 1.
DOI: 10.6084/m9.figshare.11864088
title: High SPINK1 Expression Predicts Poor Prognosis and Promotes Cell Proliferation and Metastasis of Hepatocellular Carcinoma

description: Serine protease inhibitor Kazal type I (SPINK1) is highly expressed and promotes tumor progress in different cancers. This study aimed to evaluate SPINK1’s prognostic value and its role in hepatocellular carcinoma (HCC) progress. We use tissue micro-arrays containing 273 tumor and paired para-tumor tissues to evaluate SPINK1’s prognostic value in HCC. CCK8 cell proliferation assay, wound healing assays, transwell migration and invasion assays were performed to explore the effect of SPINIK1 on HCC cells. The Cancer Genome Atlas (TCGA) database and Gene set enrichment analysis (GSEA) were used to verify the prognosis value of SPINK1 in HCC and explore the underlying mechanisms. SPINK1 expression was significantly higher in tumor tissues than paired para-tumor tissues (P &lt; 0.001). Higher SPINK1 expression in tumor was significantly associated with portal vein tumor thrombus formation (P = 0.019) and shorter overall survival (P = 0.029). SPINK1 expression in tumor tissue was an independent predictor for overall survival. SPINK1 increased proliferation (P &lt; 0.001), enhanced migration and invasion ability of HCC cell lines (P &lt; 0.001). GSEA revealed that glycine, serine, threonine and bile acid metabolism may be the underlying mechanism of SPINK1 in HCC. In conclusion, high SPINK1 expression is associated with poor prognosis of HCC. SPINK1 promotes proliferation, migration and invasion ability of HCC cells.
DOI: 10.6084/m9.figshare.11864088.v1
title: High SPINK1 Expression Predicts Poor Prognosis and Promotes Cell Proliferation and Metastasis of Hepatocellular Carcinoma

description: Serine protease inhibitor Kazal type I (SPINK1) is highly expressed and promotes tumor progress in different cancers. This study aimed to evaluate SPINK1’s prognostic value and its role in hepatocellular carcinoma (HCC) progress. We use tissue micro-arrays containing 273 tumor and paired para-tumor tissues to evaluate SPINK1’s prognostic value in HCC. CCK8 cell proliferation assay, wound healing assays, transwell migration and invasion assays were performed to explore the effect of SPINIK1 on HCC cells. The Cancer Genome Atlas (TCGA) database and Gene set enrichment analysis (GSEA) were used to verify the prognosis value of SPINK1 in HCC and explore the underlying mechanisms. SPINK1 expression was significantly higher in tumor tissues than paired para-tumor tissues (P &lt; 0.001). Higher SPINK1 expression in tumor was significantly associated with portal vein tumor thrombus formation (P = 0.019) and shorter overall survival (P = 0.029). SPINK1 expression in tumor tissue was an independent predictor for overall survival. SPINK1 increased proliferation (P &lt; 0.001), enhanced migration and invasion ability of HCC cell lines (P &lt; 0.001). GSEA revealed that glycine, serine, threonine and bile acid metabolism may be the underlying mechanism of SPINK1 in HCC. In conclusion, high SPINK1 expression is associated with poor prognosis of HCC. SPINK1 promotes proliferation, migration and invasion ability of HCC cells.
DOI: 10.22011/strenda_db.06pwmq
title: Bacterial Lactonases ZenA with Noncanonical Structural Features Hydrolyze the Mycotoxin Zearalenone

description: hydrolase [Kutzneria albida DSM 43870], N.A., null
DOI: 10.22011/strenda_db.fz8uur
title: Bacterial Lactonases ZenA with Noncanonical Structural Features Hydrolyze the Mycotoxin Zearalenone

description: zearalenone lactonase ZenA_Re, N.A., null
DOI: 10.22011/strenda_db.ev7c7q
title: Bacterial Lactonases ZenA with Noncanonical Structural Features Hydrolyze the Mycotoxin Zearalenone

description: alpha/beta hydrolase [Streptomyces], N.A., null
DOI: 10.22011/strenda_db.menafg
title: Bacterial Lactonases ZenA with Noncanonical Structural Features Hydrolyze the Mycotoxin Zearalenone

description: alpha/beta hydrolase [Streptomyces violaceusniger Tu 4113], N.A., null
DOI: 10.22011/strenda_db.oiavkx
title: Bacterial Lactonases ZenA with Noncanonical Structural Features Hydrolyze the Mycotoxin Zearalenone

description: alpha/beta hydrolase [Streptomyces], N.A., null
DOI: 10.22011/strenda_db.j8bsd9
title: Bacterial Lactonases ZenA with Noncanonical Structural Features Hydrolyze the Mycotoxin Zearalenone

description: hydrolase [Nocardia brasiliensis ATCC 700358], N.A., null
DOI: 10.22011/strenda_db.rncaiz
title: Bacterial Lactonases ZenA with Noncanonical Structural Features Hydrolyze the Mycotoxin Zearalenone

description: alpha/beta hydrolase [Rhodococcus triatomae], N.A., null
DOI: 10.22011/strenda_db.supesx
title: Bacterial Lactonases ZenA with Noncanonical Structural Features Hydrolyze the Mycotoxin Zearalenone

description: hydrolase [Mycobacterium gilvum PYR-GCK], N.A., null
DOI: 10.22011/strenda_db.bttrmn
title: Bacterial Lactonases ZenA with Noncanonical Structural Features Hydrolyze the Mycotoxin Zearalenone

description: alpha/beta hydrolase [Gordonia effusa], N.A., null
DOI: 10.6084/m9.figshare.7145528
title: Additional file 7: of Full-length transcriptome sequences of ephemeral plant Arabidopsis pumila provides insight into gene expression dynamics during continuous salt stress

description: Information on 8075 DEGs for different time points. (XLSX 7215 kb)
DOI: 10.6084/m9.figshare.7145528.v1
title: Additional file 7: of Full-length transcriptome sequences of ephemeral plant Arabidopsis pumila provides insight into gene expression dynamics during continuous salt stress

description: Information on 8075 DEGs for different time points. (XLSX 7215 kb)
DOI: 10.6084/m9.figshare.12912702
title: Learning Individualized Treatment Rules for Multiple-Domain Latent Outcomes

description: For many mental disorders, latent mental status from multiple-domain psychological or clinical symptoms may perform as a better characterization of the underlying disorder status than a simple summary score of the symptoms, and they may also serve as more reliable and representative features to differentiate treatment responses. Therefore, to address the complexity and heterogeneity of treatment responses for mental disorders, we provide a new paradigm for learning optimal individualized treatment rules (ITRs) by modeling patients’ latent mental status. We first learn the multi-domain latent states at baseline from the observed symptoms under a restricted Boltzmann machine (RBM) model, which encodes patients’ heterogeneous symptoms using an economical number of latent variables and yet remains flexible. We then optimize a value function defined by the latent states after treatment by exploiting a transformation of the observed symptoms based on the RBM without modeling the relationship between the latent mental states before and after treatment. The optimal treatment rules are derived using a weighted large margin classifier. We derive the convergence rate of the proposed estimator under the latent models. Simulation studies are conducted to test the performance of the proposed method. Finally, we apply the developed method to real world studies and we demonstrate the utility and advantage of our method in tailoring treatments for patients with major depression, and identify patient subgroups informative for treatment recommendations. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.12912702.v1
title: Learning Individualized Treatment Rules for Multiple-Domain Latent Outcomes

description: For many mental disorders, latent mental status from multiple-domain psychological or clinical symptoms may perform as a better characterization of the underlying disorder status than a simple summary score of the symptoms, and they may also serve as more reliable and representative features to differentiate treatment responses. Therefore, to address the complexity and heterogeneity of treatment responses for mental disorders, we provide a new paradigm for learning optimal individualized treatment rules (ITRs) by modeling patients’ latent mental status. We first learn the multi-domain latent states at baseline from the observed symptoms under a restricted Boltzmann machine (RBM) model, which encodes patients’ heterogeneous symptoms using an economical number of latent variables and yet remains flexible. We then optimize a value function defined by the latent states after treatment by exploiting a transformation of the observed symptoms based on the RBM without modeling the relationship between the latent mental states before and after treatment. The optimal treatment rules are derived using a weighted large margin classifier. We derive the convergence rate of the proposed estimator under the latent models. Simulation studies are conducted to test the performance of the proposed method. Finally, we apply the developed method to real world studies and we demonstrate the utility and advantage of our method in tailoring treatments for patients with major depression, and identify patient subgroups informative for treatment recommendations. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.7145537
title: Additional file 8: of Full-length transcriptome sequences of ephemeral plant Arabidopsis pumila provides insight into gene expression dynamics during continuous salt stress

description: Information on 4425 osmosis-related DEGs and 680 ion-related DEGs. (XLSX 4735 kb)
DOI: 10.6084/m9.figshare.7145537.v1
title: Additional file 8: of Full-length transcriptome sequences of ephemeral plant Arabidopsis pumila provides insight into gene expression dynamics during continuous salt stress

description: Information on 4425 osmosis-related DEGs and 680 ion-related DEGs. (XLSX 4735 kb)
DOI: 10.6084/m9.figshare.24999365
title: Supplementary Material Alignment 4.fas

description: Dataset 4 (Clavariineae) - 5.8S, LSU, SSU, <i>RPB</i><i>1</i>-exons, <i>RPB</i><i>2</i>-exons, <i>TEF1</i>-exons
DOI: 10.6084/m9.figshare.24999359
title: Supplementary Material Alignment 1.fas

description: Dataset 1 (<i>Agaricales</i>) - 5.8S, LSU, SSU, <i>RPB</i><i>1</i>-exons, <i>RPB</i><i>2</i>-exons, <i>TEF1</i>-exons
DOI: 10.6084/m9.figshare.24999362
title: Supplementary Material Alignment 3.fas

description: Dataset 3 (<i>Cuphophylloideae</i>) - ITS, LSU, <i>RPB</i><i>2</i>-exons, and <i>TEF</i><i>1</i>-exons
DOI: 10.6084/m9.figshare.24999368.v1
title: Supplementary Material Alignment 5.fas

description: Dataset 5 (<i>Cyphellopsidaceae</i>) - 5.8S, LSU, SSU, <i>RPB</i><i>1</i>-exons, <i>RPB</i><i>2</i>-exons, <i>TEF1</i>-exons
DOI: 10.6084/m9.figshare.24999362.v1
title: Supplementary Material Alignment 3.fas

description: Dataset 3 (<i>Cuphophylloideae</i>) - ITS, LSU, <i>RPB</i><i>2</i>-exons, and <i>TEF</i><i>1</i>-exons
DOI: 10.6084/m9.figshare.24999368
title: Supplementary Material Alignment 5.fas

description: Dataset 5 (<i>Cyphellopsidaceae</i>) - 5.8S, LSU, SSU, <i>RPB</i><i>1</i>-exons, <i>RPB</i><i>2</i>-exons, <i>TEF1</i>-exons
DOI: 10.6084/m9.figshare.24999365.v1
title: Supplementary Material Alignment 4.fas

description: Dataset 4 (Clavariineae) - 5.8S, LSU, SSU, <i>RPB</i><i>1</i>-exons, <i>RPB</i><i>2</i>-exons, <i>TEF1</i>-exons
DOI: 10.6084/m9.figshare.24999371
title: Supplementary Material Alignment 2.fas

description: Dataset 2 (<i>Hygrophorineae</i>) - LSU, <i>RPB</i><i>2</i>-exons, and <i>TEF</i><i>1</i>-exons
DOI: 10.6084/m9.figshare.24999371.v1
title: Supplementary Material Alignment 2.fas

description: Dataset 2 (<i>Hygrophorineae</i>) - LSU, <i>RPB</i><i>2</i>-exons, and <i>TEF</i><i>1</i>-exons
DOI: 10.6084/m9.figshare.7145549
title: Additional file 9: of Full-length transcriptome sequences of ephemeral plant Arabidopsis pumila provides insight into gene expression dynamics during continuous salt stress

description: Genes that were differentially co-expressed at all six time points. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7145549.v1
title: Additional file 9: of Full-length transcriptome sequences of ephemeral plant Arabidopsis pumila provides insight into gene expression dynamics during continuous salt stress

description: Genes that were differentially co-expressed at all six time points. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.19728473
title: Additional file 2 of Effects of fertilizer and waterlogging on the diversity and functioning of the microbial community in greenhouse cultivation soil

description: Additional file 2. The data of bacterial OUT in different treated soils.
DOI: 10.6084/m9.figshare.19728473.v1
title: Additional file 2 of Effects of fertilizer and waterlogging on the diversity and functioning of the microbial community in greenhouse cultivation soil

description: Additional file 2. The data of bacterial OUT in different treated soils.
DOI: 10.6084/m9.figshare.19728476
title: Additional file 3 of Effects of fertilizer and waterlogging on the diversity and functioning of the microbial community in greenhouse cultivation soil

description: Additional file 3. The data of fungal OUT in different treated soils.
DOI: 10.6084/m9.figshare.19728476.v1
title: Additional file 3 of Effects of fertilizer and waterlogging on the diversity and functioning of the microbial community in greenhouse cultivation soil

description: Additional file 3. The data of fungal OUT in different treated soils.
DOI: 10.6084/m9.figshare.20252765
title: Additional file 3 of Bladder cancer-derived exosomal KRT6B promotes invasion and metastasis by inducing EMT and regulating the immune microenvironment

description: Additional file 3: Table S3. The expression of KRT6B in various TDEs.