cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60533/boss-2020-fqi7
title: Connectomes across development reveal principles of brain maturation
DOI: 10.60533/boss-2021-6z19
title: NeuroPAL: A Multicolor Atlas for Whole-Brain Neuronal Identification in C. elegans
DOI: 10.60533/boss-2023-rtph
title: High-resolution transmission electron microscopy dataset of C. elegans dauer nerve ring.
DOI: 10.5066/p971mb6w
title: Input and results from boosted regression tree and artificial neural network models that predict daily maximum pH and daily minimum dissolved oxygen in Upper Klamath Lake, 2005-2019

description: This data release contains the model inputs, outputs, and source code (written in R) for the boosted regression tree (BRT) and artificial neural network (ANN) models developed for four sites in Upper Klamath Lake which were used to simulate daily maximum pH and daily minimum dissolved oxygen (DO) from May 18th to October 4th in 2005-12 and 2015-19 at four sites, and to evaluate variable effects and their importance. Simulations were not developed for 2013 and 2014 due to a large amount of missing meteorological data. The sites included: 1) Williamson River (WMR), which was located in the northern portion of the lake near the mouth of the Williamson River and had a depth between 0.7 and 2.9 meters; 2) Rattlesnake Point (RPT), which was located near the southern portion of the lake and had a depth between 1.9 and 3.4 meters; 3) Mid-North (MDN), which was located in the northwest portion of the lake and a depth between 2.4 and 4.2 meters; 4) Mid-Trench (MDT) , which was located in the trench that runs along the western portion of the lake and had a depth between 13.2 and 15 meters.
DOI: 10.6084/m9.figshare.25062567
title: Alignment S3 from Adaptive evolution and loss of a putative magnetoreceptor in passerines

description: Cry1a alignment
DOI: 10.6084/m9.figshare.25062567.v1
title: Alignment S3 from Adaptive evolution and loss of a putative magnetoreceptor in passerines

description: Cry1a alignment
DOI: 10.6084/m9.figshare.25062570
title: Alignment S1 from Adaptive evolution and loss of a putative magnetoreceptor in passerines

description: Cry4a alignment
DOI: 10.6084/m9.figshare.25062570.v1
title: Alignment S1 from Adaptive evolution and loss of a putative magnetoreceptor in passerines

description: Cry4a alignment
DOI: 10.6084/m9.figshare.25062573
title: Dataset S1 from Adaptive evolution and loss of a putative magnetoreceptor in passerines

description: Table with cryptochrome sequence extraction information
DOI: 10.6084/m9.figshare.25062573.v1
title: Dataset S1 from Adaptive evolution and loss of a putative magnetoreceptor in passerines

description: Table with cryptochrome sequence extraction information
DOI: 10.6084/m9.figshare.25062576
title: Dataset S4 from Adaptive evolution and loss of a putative magnetoreceptor in passerines

description: Phylogeny birdtree.org
DOI: 10.6084/m9.figshare.25062576.v1
title: Dataset S4 from Adaptive evolution and loss of a putative magnetoreceptor in passerines

description: Phylogeny birdtree.org
DOI: 10.6084/m9.figshare.25062582
title: Alignment S5 from Adaptive evolution and loss of a putative magnetoreceptor in passerines

description: Cry2 alignment
DOI: 10.6084/m9.figshare.25062582.v1
title: Alignment S5 from Adaptive evolution and loss of a putative magnetoreceptor in passerines

description: Cry2 alignment
DOI: 10.6084/m9.figshare.25062585
title: Alignment S4 from Adaptive evolution and loss of a putative magnetoreceptor in passerines

description: Cry1b alignment
DOI: 10.6084/m9.figshare.25062585.v1
title: Alignment S4 from Adaptive evolution and loss of a putative magnetoreceptor in passerines

description: Cry1b alignment
DOI: 10.6084/m9.figshare.25062588
title: Alignment S2 from Adaptive evolution and loss of a putative magnetoreceptor in passerines

description: Cry4b alignment
DOI: 10.6084/m9.figshare.25062588.v1
title: Alignment S2 from Adaptive evolution and loss of a putative magnetoreceptor in passerines

description: Cry4b alignment
DOI: 10.6084/m9.figshare.25062591
title: Dataset S2 from Adaptive evolution and loss of a putative magnetoreceptor in passerines

description: Results of RateShift comparison of passerines vs non-passerines
DOI: 10.6084/m9.figshare.25062591.v1
title: Dataset S2 from Adaptive evolution and loss of a putative magnetoreceptor in passerines

description: Results of RateShift comparison of passerines vs non-passerines
DOI: 10.6084/m9.figshare.25062597
title: Data flies from Threshold shifts and developmental temperature impact trade-offs between tolerance and plasticity

description: Data used in this study
DOI: 10.6084/m9.figshare.25062597.v1
title: Data flies from Threshold shifts and developmental temperature impact trade-offs between tolerance and plasticity

description: Data used in this study
DOI: 10.5066/p9ssyikz
title: Streambank topographic lidar survey of the French Broad River near the Interstate 26 bridge located south of Asheville, NC – November 2019, Pre-construction

description: In January 2020, the North Carolina Department of Transportation (NCDOT) began work on the Interstate 26 (I 26) highway widening project that involves a bridge crossing over the French Broad River (FBR) near Asheville, North Carolina. The U.S. Geological Survey (USGS) in cooperation with the NCDOT, conducted a streambank light detection and ranging (lidar) survey of the streambanks of the French Broad River in November of 2019, approximately two months before construction began. The survey extended from 300 meters (m) upstream to 700 m downstream from the bridge. Two georeferenced lidar scans were collected; one of the right-descending bank and one of the left-descending bank. Three-dimensional points of the streambank were collected with a canoe-mounted Optech ILRIS three-dimensional laser scanner and an Applanix Position and Orientation Solution for Marine Vessels (POS-MV) WaveMaster inertial navigation system (INS), which consists of dual Global Navigation Satellite Systems (GNSS) receivers and an inertial motion unit. The lidar scanner creates a “point cloud” of lidar returns and the INS computes the position and orientation of the points in three-dimensional space. The navigation solution from the INS was further improved in post processing. Ground points were identified in each point cloud with a Cloth Simulation Filter (Zhang and others, 2016) implemented in CloudCompare software (CloudCompare, 2023) and classified with code 2 (ground) according to the American Society for Photogrammetry and Remote Sensing (ASPRS) standard lidar point classes (ASPRS, 2011). Water-surface reflections were identified and classified as code 7 (low noise; ASPRS, 2011). All other points in each point cloud were classified as code 1 (unclassified; ASPRS, 2011). The left and right streambank point clouds are provided as separate LAS files, an industry-standard binary format for storing large point cloud datasets. Each LAS file is provided with position and elevation data in three dimensions in units of meters, 8-bit scaled intensity, and the classification code. The data are projected in Universal Transverse Mercator (UTM) coordinate system, zone 17 north, horizontally referenced to the North American Datum of 1983 (NGS, 2018a), 2011 realization (NAD83 2011), and vertically referenced to the North American Vertical Datum of 1988 (NAVD88; NGS, 2018b).
DOI: 10.57745/ahfegf
title: DATA-DDT granulometry and rate of amendment.tab

description: This dataset compiles all the concentrations of DDT and DDT metabolites obtained from environmental availability assays
DOI: 10.5519/qd.q6ait36u
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (56 records)
DOI: 10.5066/p9bc6ub8
title: Soil-Water-Balance forecasted climate model output for simulations of water budget components in the Mississippi Embayment Regional Aquifer System, 2019 to 2055

description: This data release provides 64 forecasted water budget simulations for the Mississippi Embayment Regional Aquifer System (MERAS) during the period 2019 to 2055. Gridded daily data (1-kilometer resolution) include net infiltration (potential groundwater recharge), rejected net infiltration, interception, runoff, runoff outside (runoff that cannot be routed downslope), irrigation, actual evapotranspiration, minimum and maximum temperatures, and gross precipitation. The gridded representations of water budget components are output from USGS Soil-Water-Balance (SWB) model (Nielsen and Westenbroek, 2023; Westenbroek and Nielsen, 2023) simulations in netcdf4 format, and all water budget components are in inches.  The precipitation, maximum air temperature, and minimum air temperature data used as climatic input to the SWB model application were derived from Coupled Model Intercomparison Project Phase 5 (CMIP5) projections (Brekke and others, 2013), downscaled using Localized Constructed Analogs (LOCA; Pierce and others, 2014) to a 1/16 degree spatial resolution. The SWB model produced output based on 64 CMIP5 climate projections, half of which are Representative Concentration Pathway (RCP) 4.5 and half of which are RCP 8.5 greenhouse gas concentration trajectories. All 64 forecasted climate model outputs can be accessed through the child items: RCP_4_5 and RCP_8_5. Outputs for each climate model scenario are housed in a zipped folder named after the respective climate scenario. Each zipped folder contains ten files: actual_et__2019-01-01_to_2055-12-31__989_by_661.nc, gross_precipitation__2019-01-01_to_2055-12-31__989_by_661.nc, interception__2019-01-01_to_2055-12-31__989_by_661.nc, irrigation__2019-01-01_to_2055-12-31__989_by_661.nc, net_infiltration__2019-01-01_to_2055-12-31__989_by_661.nc, rejected_net_infiltration__2019-01-01_to_2055-12-31__989_by_661.nc, runoff__2019-01-01_to_2055-12-31__989_by_661.nc, runoff_outside__2019-01-01_to_2055-12-31__989_by_661.nc, tmax__2019-01-01_to_2055-12-31__989_by_661.nc, and tmin__2019-01-01_to_2055-12-31__989_by_661.nc. Further details about the SWB model used to produce the water budget forecasts can be found in Nielsen and Westenbroek (2023).
DOI: 10.5519/qd.rp53nisi
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (55 records)
DOI: 10.6084/m9.figshare.25062626
title: Shipley data from Locomotion and the early Mesozoic success of Archosauromorpha

description: Excel file of the data
DOI: 10.18112/openneuro.ds004795.v1.0.0
title: Simulated motion artifacts based on the (MR-ART) dataset (https://openneuro.org/datasets/ds004173/versions/1.0.2)
DOI: 10.5066/p97kk17g
title: Model archive and output files for net infiltration, runoff, and irrigation water use for the Mississippi Embayment Regional Aquifer System, 2000 to 2020, simulated with the Soil-Water-Balance model

description: This item provides Soil-Water-Balance (SWB) model output  and a model archive of water budget simulations for the Mississippi Embayment Regional Aquifer System (MERAS) during the period 2000 to 2020. Gridded daily data (1 kilometer resolution) include net infiltration (groundwater recharge), rejected net infiltration, runoff, irrigation, actual evapotranspiration and gross precipitation The model output files are in netcdf format and all water budget components are in inches. The net infiltration, rejected net infiltration, runoff, irrigation, and actual evapotranspiration data sets are from simulations done with the USGS SWB model (version 2; Westenbroek and others, 2018). The precipitation and temperature data used as input for the SWB model application are derived from the PRISM group (http://prism.oregonstate.edu/; Daly and others, 1994). Further details about this application of the SWB model can be found in the related primary publication.The primary publication can be accessed through links in the related external resources section below. There are 2 child items: one with daily netcdf model output and one with a Soil-Water-Balance model archive. These data provide updates to previously published estimates for 2000 to 2018 in https://doi.org/10.5066/P98PBR8O and  https://doi.org/10.5066/P9U484X5.
DOI: 10.5281/zenodo.7259959
title: Supplyment  Dataset

description: This data set is upload for the submitted article entitled by 'Control of Surface Exposure Age on Iron Reactivity of Atmospheric Dust' in Geophysical Research Letter.
DOI: 10.5281/zenodo.7259960
title: Supplyment  Dataset

description: This data set is upload for the submitted article entitled by 'Control of Surface Exposure Age on Iron Reactivity of Atmospheric Dust' in Geophysical Research Letter.
DOI: 10.5067/fauemz7o9m5m
title: GEOS-2 International Optical Beacon Data Input
DOI: 10.5067/3fgx7g40iddp
title: GEOS-3 Satellite-to-Satellite Tracking Data
DOI: 10.6084/m9.figshare.25061930
title: ISSCD dataset

description: A dataset for semantic change detection on impervious surfaces
DOI: 10.6084/m9.figshare.25061930.v1
title: ISSCD dataset

description: A dataset for semantic change detection on impervious surfaces
DOI: 10.6084/m9.figshare.25062623
title: Datasets for the paper "Does county financial marketization promote high-quality development of agricultural economy? : Analysis of the mechanism of county urbanization".

description: Datasets for the paper "Does county financial marketization promote high-quality development of agricultural economy? : Analysis of the mechanism of county urbanization".
DOI: 10.6084/m9.figshare.25062623.v1
title: Datasets for the paper "Does county financial marketization promote high-quality development of agricultural economy? : Analysis of the mechanism of county urbanization".

description: Datasets for the paper "Does county financial marketization promote high-quality development of agricultural economy? : Analysis of the mechanism of county urbanization".
DOI: 10.6084/m9.figshare.25062728
title: Anonymized Scare Device Data

description: Data from the efficacy of scare devices.
DOI: 10.6084/m9.figshare.25062728.v1
title: Anonymized Scare Device Data

description: Data from the efficacy of scare devices.
DOI: 10.5519/qd.09d0sy7j
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (55 records)
DOI: 10.25810/s7n-vh24.47
title: African Newspaper Coverage of Climate Change or Global Warming, 2004-2023 December 2023

description: The Media and Climate Change Observatory Data monitors 117 sources (across newspapers, radio and TV) in 55 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://sciencepolicy.colorado.edu/media_coverage.
DOI: 10.6084/m9.figshare.24885404
title: <i>Comamonas testosteroni</i> as the cause of mortality in embryonated chicken eggs of breeding broiler hens in Costa Rica

description: Mortality of chicken embryos and first-week chickens was reported in a commercial incubator company in Costa Rica. Six 1-day-old Cobb chickens and twenty-four embryonated chicken eggs were examined in the Laboratory of Avian Pathology and the Laboratory of Bacteriology of the National University of Costa Rica. Twelve dead-in-shell embryos showed maceration and were immersed in a putrid, turbid, slightly thick brown liquid. Additionally, the other 12 embryonated eggs had milky yellow-orange content. The livers of those embryos had congestion, haemorrhages and multifocal cream foci of necrosis. Granulocytic infiltration was observed in the bursa of Fabricius, myocardium, liver, lung and kidney. Livers and egg yolks from six embryonated chickens and all 1-day-old chickens were aseptically collected and cultured. In addition, tissues from six better conserved embryos and all 1-day-old chickens were fixed in buffered formalin and embedded in paraffin. Biochemical and molecular tests identified <i>Comamonas testosteroni</i> as the cause of the early, middle and late embryo mortality. As all the eggshells from the sampled embryonated eggs were dirty with soiled a fecal matter, contamination after manipulating the eggs was considered the source of infection. <i>C. testosteroni</i> is an environmental microorganism that has rarely been reported to cause human disease. To our knowledge, this is the first report of <i>C. testosteroni</i> causing mortality in a hatchery. Cleaning and disinfection using ozone were implemented in the hatchery to eliminate the embryo mortality associated with <i>C. testosteroni</i>.
DOI: 10.6084/m9.figshare.24885404.v1
title: <i>Comamonas testosteroni</i> as the cause of mortality in embryonated chicken eggs of breeding broiler hens in Costa Rica

description: Mortality of chicken embryos and first-week chickens was reported in a commercial incubator company in Costa Rica. Six 1-day-old Cobb chickens and twenty-four embryonated chicken eggs were examined in the Laboratory of Avian Pathology and the Laboratory of Bacteriology of the National University of Costa Rica. Twelve dead-in-shell embryos showed maceration and were immersed in a putrid, turbid, slightly thick brown liquid. Additionally, the other 12 embryonated eggs had milky yellow-orange content. The livers of those embryos had congestion, haemorrhages and multifocal cream foci of necrosis. Granulocytic infiltration was observed in the bursa of Fabricius, myocardium, liver, lung and kidney. Livers and egg yolks from six embryonated chickens and all 1-day-old chickens were aseptically collected and cultured. In addition, tissues from six better conserved embryos and all 1-day-old chickens were fixed in buffered formalin and embedded in paraffin. Biochemical and molecular tests identified <i>Comamonas testosteroni</i> as the cause of the early, middle and late embryo mortality. As all the eggshells from the sampled embryonated eggs were dirty with soiled a fecal matter, contamination after manipulating the eggs was considered the source of infection. <i>C. testosteroni</i> is an environmental microorganism that has rarely been reported to cause human disease. To our knowledge, this is the first report of <i>C. testosteroni</i> causing mortality in a hatchery. Cleaning and disinfection using ozone were implemented in the hatchery to eliminate the embryo mortality associated with <i>C. testosteroni</i>.
DOI: 10.5281/zenodo.10568962
title: Fonctionnalisation de nanoparticules magnétiques  Fe3O4 par du polyéthylène glycol : synthèse et caractérisation

description: Les ferrofluides fonctionnalisés par du polyéthylène glycol (PEG) sont depuis plusieurs années utilisés dans pour le traitement du cancer. Il présente de meilleures propriétés thérapeutiques que la présence seule de ferrofluides. Dans cette étude, l’impact du taux de fonctionnalisation de ferrofluides par du PEG est étudié ici. Pour ce faire, deux formulations de ferrofluides ont été réalisées dans les mêmes conditions en solution aqueuse puis, chacune a été mélangée avec une concentration de PEG-4000 différente (0,04 g.ml-1 et 0,08 g.ml-1). Les deux formulations ont été caractérisées par DLS, NTA, zétamétrie, AFM et MET. Elles ont permis de trouver une taille de nanoparticules pour les ferrofluides de 18,1 nm (MET), de 17 nm (AFM) pour les ferrofluides-PEG-4000#1 et de 13,2 nm (AFM) pour les ferrofluides-PEG-4000#2 avec respectivement des agrégats de 160, 45 et 40 nm (AFM). Ces analyses ont permis de montrer que l’on n’a pas obtenu des ferrofluides-PEG, mais une encapsulation de ferrofluides dans le PEG-4000. Ainsi, cette étude a permis de montrer une polydispersité en taille et de forme dans les nanoparticules entre les ferrofluides et les ferrofluides-PEG. Les résultats obtenus ont permis de montrer que la concentration de PEG, avait un impact sur la taille des NPs, et plus précisément qu’elle réduisait leur taille. De plus, l’observation des ferrofluides-PEG-4000 a permis de montrer leur encapsulation et leur stabilité.
DOI: 10.5281/zenodo.10568963
title: Fonctionnalisation de nanoparticules magnétiques  Fe3O4 par du polyéthylène glycol : synthèse et caractérisation

description: Les ferrofluides fonctionnalisés par du polyéthylène glycol (PEG) sont depuis plusieurs années utilisés dans pour le traitement du cancer. Il présente de meilleures propriétés thérapeutiques que la présence seule de ferrofluides. Dans cette étude, l’impact du taux de fonctionnalisation de ferrofluides par du PEG est étudié ici. Pour ce faire, deux formulations de ferrofluides ont été réalisées dans les mêmes conditions en solution aqueuse puis, chacune a été mélangée avec une concentration de PEG-4000 différente (0,04 g.ml-1 et 0,08 g.ml-1). Les deux formulations ont été caractérisées par DLS, NTA, zétamétrie, AFM et MET. Elles ont permis de trouver une taille de nanoparticules pour les ferrofluides de 18,1 nm (MET), de 17 nm (AFM) pour les ferrofluides-PEG-4000#1 et de 13,2 nm (AFM) pour les ferrofluides-PEG-4000#2 avec respectivement des agrégats de 160, 45 et 40 nm (AFM). Ces analyses ont permis de montrer que l’on n’a pas obtenu des ferrofluides-PEG, mais une encapsulation de ferrofluides dans le PEG-4000. Ainsi, cette étude a permis de montrer une polydispersité en taille et de forme dans les nanoparticules entre les ferrofluides et les ferrofluides-PEG. Les résultats obtenus ont permis de montrer que la concentration de PEG, avait un impact sur la taille des NPs, et plus précisément qu’elle réduisait leur taille. De plus, l’observation des ferrofluides-PEG-4000 a permis de montrer leur encapsulation et leur stabilité.
DOI: 10.5281/zenodo.10569235
title: Average SST for Bering Sea crab management areas

description: A time series of average sea surface temperature for crab managemnet Areas in the Bering Sea. Crab Management area boundaries were obtained from Erin Fedewa (AFSC) and Brett Holycross (PSMFC). SST product was NOAA coral reef watch 5k resolution. Data processing and downloading was done on the AKFIN database. See https://github.com/MattCallahan-NOAA/SST-shiny
DOI: 10.5281/zenodo.10569236
title: Average SST for Bering Sea crab management areas

description: A time series of average sea surface temperature for crab managemnet Areas in the Bering Sea. Crab Management area boundaries were obtained from Erin Fedewa (AFSC) and Brett Holycross (PSMFC). SST product was NOAA coral reef watch 5k resolution. Data processing and downloading was done on the AKFIN database. See https://github.com/MattCallahan-NOAA/SST-shiny
DOI: 10.6073/pasta/84b6c379fd90bdaa9b3ce6335908f885
title: Marcell Experimental Forest daily precipitation, 1961 - ongoing

description: This data publication contains daily precipitation data collected from 1961-ongoing at the Marcell Experimental Forest (MEF) in Itasca County, Minnesota, which is operated and maintained by the USDA Forest Service, Northern Research Station. The data come from seven peatland watersheds instrumented for hydrologic monitoring.
DOI: 10.25810/8pez-h060.48
title: Asian Newspaper Coverage of Climate Change or Global Warming, 2004-2023 - December 2023

description: The Media and Climate Change Observatory Data monitors 126 sources (across newspapers, radio and TV) in 58 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.5067/678j8km836jw
title: tavg1_2d_ocn_Nx: MERRA 2D IAU Ocean Surface Diagnostic, Time Average 1-hourly (2/3x1/2L1) Version 5.2.0
DOI: 10.5067/bufar1dpyir9
title: instU_3d_asm_Cp: MERRA 3D IAU State, Meteorology Diurnal (p-coord, 1.25x1.25L42) Version 5.2.0
DOI: 10.5067/g09sadroguj1
title: inst1_2d_int_Nx: MERRA 2D IAU Diagnostic, Vertical Integrals and Budget Terms, Time Average 1-hourly (2/3x1/2L1) Version 5.2.0
DOI: 10.5067/uo7l2b5nfyup
title: instU_2d_int_Nx: MERRA 2D IAU Diagnostic, Vertical Integrals and Budget Terms, Diurnal (2/3x1/2L1) Version 5.2.0
DOI: 10.5067/4eq54aki405r
title: tavg1_2d_flx_Nx: MERRA 2D IAU Diagnostic, Surface Fluxes, Time Average 1-hourly (2/3x1/2L1) Version 5.2.0
DOI: 10.5067/ri9vtuqn74xj
title: tavg1_2d_rad_Nx: MERRA 2D IAU Diagnostic, Radiation Surface and TOA, Time Average 1-hourly (2/3x1/2L1) Version 5.2.0