cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29312108
title: Challenges in pain management and opioid prescribing practices following traumatic injury: a focus group study with orthopedic surgeons and general practitioners

description: To explore the experiences of orthopedic surgeons and general practitioners (GPs) in providing pain management, focusing on opioid prescribing practices and follow-up care for trauma patients following orthopedic injuries. Four semi-structured focus group interviews were conducted among 18 physicians, two among GPs and two among orthopedic trauma surgeons. Each group consisted of either specialist candidates or experienced specialists. The interviews explored experiences with follow-up care for orthopedic trauma patients, pain management, including opioid use and tapering, and were thematically analyzed. Four main themes were identified: (1) Navigating post-discharge pain management, where GPs experienced problematic transfer of treatment responsibility and lack of opioid taper plans from the specialist health service. (2) A knowledge gap in pain management, with GPs reporting insufficient knowledge about opioid treatment, and orthopedic residents describing lacking systematic training in this area during specialization. (3) Changes in opioid prescribing practices over time, which had led to a self-perceived shift from liberal to restrictive prescription attitudes. (4) Unrealistic expectations of pain relief among patients were perceived by GPs and orthopedic surgeons throughout recovery. Our findings reveal a knowledge gap in pain management, suggesting a need for enhanced education and training for GPs, both in specialization and specialist, and for orthopedic residents. This is crucial to meet the needs of trauma patients with severe orthopedic injuries and long-term pain. GPs need access to advisory support from the specialist healthcare system. These resources, including follow-up during challenging recovery phases, must be accessible to enhance patients care.
DOI: 10.6084/m9.figshare.29312108.v1
title: Challenges in pain management and opioid prescribing practices following traumatic injury: a focus group study with orthopedic surgeons and general practitioners

description: To explore the experiences of orthopedic surgeons and general practitioners (GPs) in providing pain management, focusing on opioid prescribing practices and follow-up care for trauma patients following orthopedic injuries. Four semi-structured focus group interviews were conducted among 18 physicians, two among GPs and two among orthopedic trauma surgeons. Each group consisted of either specialist candidates or experienced specialists. The interviews explored experiences with follow-up care for orthopedic trauma patients, pain management, including opioid use and tapering, and were thematically analyzed. Four main themes were identified: (1) Navigating post-discharge pain management, where GPs experienced problematic transfer of treatment responsibility and lack of opioid taper plans from the specialist health service. (2) A knowledge gap in pain management, with GPs reporting insufficient knowledge about opioid treatment, and orthopedic residents describing lacking systematic training in this area during specialization. (3) Changes in opioid prescribing practices over time, which had led to a self-perceived shift from liberal to restrictive prescription attitudes. (4) Unrealistic expectations of pain relief among patients were perceived by GPs and orthopedic surgeons throughout recovery. Our findings reveal a knowledge gap in pain management, suggesting a need for enhanced education and training for GPs, both in specialization and specialist, and for orthopedic residents. This is crucial to meet the needs of trauma patients with severe orthopedic injuries and long-term pain. GPs need access to advisory support from the specialist healthcare system. These resources, including follow-up during challenging recovery phases, must be accessible to enhance patients care.
DOI: 10.3535/mqp-qwg-ba5
title: Udea Guenée, 1845

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/m7v-q5m-jfw
title: Agonopterix heracliana Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/zkz-jyz-tld
title: Hypena proboscidalis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/0nw-jf7-9dl
title: Anarta (Anarta) myrtilli Linnaeus, 1761

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/zam-k1e-vs5
title: Opigena polygona [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/msz-dq0-tw8
title: Pleurota bicostella (Clerck, 1761)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/4q9-acs-387
title: Clostera pigra (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/8xn-yw4-x90
title: Udea Guenée, 1845

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/qy6-ycp-l7f
title: Agonopterix heracliana Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/dvh-evh-dy1
title: Ochlodes Scudder, 1872

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.6084/m9.figshare.30801479
title: Equivalence Ratio and Proportional Encoding

description: This paper examines the traditional use of the fuel-air equivalence ratio as a metric in combustion analysis, highlighting limitations arising from its semi-infinite, asymmetric scale and lack of physical directness. The authors demonstrate through statistical modeling and combustion simulations that using equivalence ratio can misrepresent the distribution and comparative behavior of fuel-lean and fuel-rich mixtures, leading to ambiguity and misleading interpretations. To address these shortcomings, two alternative metrics are considered: the stoichiometry metric and the equivalence metric. Both compress the infinite range of the equivalence ratio into a finite, symmetric interval with the stoichiometric condition at the origin, enhancing the interpretability and fairness when comparing mixtures. The equivalence metric, a simple transformation of Law’s normalized equivalence ratio, enables a smoother and more balanced representation of combustion properties, while the stoichiometry metric more directly relates to available chemical energy but exhibits undesirable nonlinearities. The study advocates for these new metrics to improve both physical insight and proportional encoding in the visualization and analysis of combustion processes, especially in complex or stratified systems.
DOI: 10.3535/mxn-t9g-m5w
title: Nymphalis antiopa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.6084/m9.figshare.30801479.v1
title: Equivalence Ratio and Proportional Encoding

description: This paper examines the traditional use of the fuel-air equivalence ratio as a metric in combustion analysis, highlighting limitations arising from its semi-infinite, asymmetric scale and lack of physical directness. The authors demonstrate through statistical modeling and combustion simulations that using equivalence ratio can misrepresent the distribution and comparative behavior of fuel-lean and fuel-rich mixtures, leading to ambiguity and misleading interpretations. To address these shortcomings, two alternative metrics are considered: the stoichiometry metric and the equivalence metric. Both compress the infinite range of the equivalence ratio into a finite, symmetric interval with the stoichiometric condition at the origin, enhancing the interpretability and fairness when comparing mixtures. The equivalence metric, a simple transformation of Law’s normalized equivalence ratio, enables a smoother and more balanced representation of combustion properties, while the stoichiometry metric more directly relates to available chemical energy but exhibits undesirable nonlinearities. The study advocates for these new metrics to improve both physical insight and proportional encoding in the visualization and analysis of combustion processes, especially in complex or stratified systems.
DOI: 10.15468/dl.kakkcu
title: Occurrence Download

description: A dataset containing 9461 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Macaca mulatta"
 ]
}

 The dataset includes 9461 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031435-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/27q-w4j-hyy
title: Pleurota bicostella (Clerck, 1761)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/4ps-kxl-p86
title: Colias tyche (Böber, 1812)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/c6t-acf-hl9
title: Colocasia coryli (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/0pv-7fp-r31
title: Charanyca (Charanyca) trigrammica (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/z2w-l11-klc
title: Anarta (Anarta) myrtilli Linnaeus, 1761

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/6g4-mk0-n5k
title: Cyclophora albipunctata (Hufnagel, 1767)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/ele-95x-5ka
title: Aricia artaxerxes (Fabricius, 1793)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/5yz-3qx-kvf
title: Boloria napaea (Hübner)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/8ql-4h5-tga
title: Boloria napaea (Hübner)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/klw-143-8fv
title: Udea lutealis Hübner, 1809

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/yde-rlp-8k6
title: Anarta (Anarta) myrtilli Linnaeus, 1761

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/n9s-c4f-swc
title: Pleurota bicostella (Clerck, 1761)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/6e0-ygv-cyz
title: Nymphalis antiopa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/0d9-1y5-67d
title: Hypochalcia ahenella [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/xmp-v31-6z8
title: Agriades Hübner, 1819

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/618-01d-jbz
title: Agonopterix heracliana Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/66h-n17-x0a
title: Blepharita amica Treitschke, 1825

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/j1n-1hk-hfx
title: Anarta (Anarta) myrtilli Linnaeus, 1761

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/nzm-glk-sjs
title: Anarta (Anarta) myrtilli Linnaeus, 1761

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/l28-0xl-xtf
title: Udea Guenée, 1845

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/5rz-tz7-e9a
title: Anarta (Anarta) myrtilli Linnaeus, 1761

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vpk-6c0-pda
title: Ochlodes Scudder, 1872

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/0hm-gvs-qdk
title: Agonopterix heracliana Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/yf1-dsc-dwp
title: Acrobasis repandana Fabricius, 1798

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/19l-a6e-e58
title: Hipparchia semele Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/yhm-2hn-wj6
title: Euphydryas Scudder, 1872

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/ztw-ynl-03p
title: Ochlodes Scudder, 1872

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/7gp-h2d-xay
title: Miltochrista miniata (Forster, 1771)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/axj-915-hnp
title: Udea Guenée, 1845

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/0ya-cld-2d1
title: Trichosea ludifica (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/rdk-pbf-1b8
title: Apamea (Apamea) crenata (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/zgp-78n-4fh
title: Miltochrista miniata (Forster, 1771)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/0sf-a0e-2v9
title: Oligia latruncula ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/gny-dqq-lz5
title: Ochlodes Scudder, 1872

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/hvf-vs3-327
title: Oligia latruncula ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/rdj-102-75v
title: Cyclophora albipunctata (Hufnagel, 1767)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/6hy-jd7-fmy
title: Ochlodes Scudder, 1872

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/m4x-v9f-sny
title: Ochlodes Scudder, 1872

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/c1f-fvg-3ps
title: Colocasia coryli (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/je1-znl-nkp
title: Miltochrista miniata (Forster, 1771)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/3ze-c3d-ywk
title: Leucoma salicis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/h78-y9e-k6q
title: Coenonympha pamphilus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/93k-geq-meg
title: Ochlodes Scudder, 1872

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/lfq-dy9-f4f
title: Pempelia Hübner, 1825

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/hpq-ehw-0rt
title: Oligia latruncula ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/a0v-zz6-69e
title: Mniotype satura [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vzm-vn5-03t
title: Leucoma salicis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.5281/zenodo.10659710
title: MicroReset: characterization of the rabbit (Oryctolagus cuniculus) fecal metagenome and resistome by deep shotgun sequencing

description: Data sourceThe dataset was generated from 30 rabbit fecal samples subjected to deep shotgun metagenomic sequencing. The sequencing data is available under the BioProject PRJEB50625.Metagenomic AssemblyRaw sequencing reads were first pre-processed using fastp for adapter removal and quality trimming. Host-derived reads were filtered out by mapping to the rabbit reference genome (GCF_000001635.27) using Bowtie2 and removing mapped reads with Samtools. Each sample was individually assembled using metaSPAdes. Contigs shorter than 1,500 bp were excluded from downstream analysis.
MAG RecoveryReads from each sample were mapped to all 30 assemblies (30×30 mappings) using Bowtie2. The resulting alignments were sorted and indexed with Samtools. Contig coverage across all samples was computed using `jgi_summarize_bam_contig_depths`. Binning was performed with MetaBAT 2 and SemiBin v1.3. MAG quality was assessed with CheckM. Only high-quality MAGs (≥70% completeness, ≤5% contamination, N50 ≥ 8 kb) were retained.Non-Redundant Gene CatalogGene prediction was carried out using Prodigal on all contigs from the current study (with `-m -p meta`). Genes shorter than 90 bp or lacking start/stop codons were discarded. The remaining genes from both sources were pooled and clustered using CD-HIT-EST (parameters: `-c 0.95 -aS 0.90 -G 0 -d 0 -M 0 -T 0`). The longest contigs were used to select representative genes.
MSP RecoveryShotgun reads from the 30 samples were aligned to the non-redundant gene catalog using the Meteor suite, generating a gene abundance matrix (5.7 million genes × 30 samples). Co-abundant genes were grouped into 1,053 Metagenomic Species Pan-genomes (MSPs) using MSPminer.
Taxonomic Annotation of MSPsMAGs representing each species were taxonomically annotated using GTDB-Tk with GTDB release r214. The resulting taxonomy was propagated to the corresponding MSPs.
Phylogenetic Tree ConstructionA set of 39 universal phylogenetic marker genes was extracted from the 1,053 MSPs (or their corresponding MAGs, when available) using fetchMGs. Each marker was independently aligned using MUSCLE, and the alignments were concatenated and trimmed using trimAl (parameter: `-automated1`). A maximum-likelihood phylogenetic tree was constructed with FastTreeMP (parameters: `-gamma -pseudo -spr -mlacc 3 -slownni`).
Mapping rate distribution across public cohortsWe generated mapping rate distribution plots using Meteor2 (default parameters) for PRJEB50625 (cohort used in catalogue assembly).
DOI: 10.5281/zenodo.17805735
title: MicroReset: characterization of the rabbit (Oryctolagus cuniculus) fecal metagenome and resistome by deep shotgun sequencing

description: Data sourceThe dataset was generated from 30 rabbit fecal samples subjected to deep shotgun metagenomic sequencing. The sequencing data is available under the BioProject PRJEB50625.Metagenomic AssemblyRaw sequencing reads were first pre-processed using fastp for adapter removal and quality trimming. Host-derived reads were filtered out by mapping to the rabbit reference genome (GCF_000001635.27) using Bowtie2 and removing mapped reads with Samtools. Each sample was individually assembled using metaSPAdes. Contigs shorter than 1,500 bp were excluded from downstream analysis.
MAG RecoveryReads from each sample were mapped to all 30 assemblies (30×30 mappings) using Bowtie2. The resulting alignments were sorted and indexed with Samtools. Contig coverage across all samples was computed using `jgi_summarize_bam_contig_depths`. Binning was performed with MetaBAT 2 and SemiBin v1.3. MAG quality was assessed with CheckM. Only high-quality MAGs (≥70% completeness, ≤5% contamination, N50 ≥ 8 kb) were retained.Non-Redundant Gene CatalogGene prediction was carried out using Prodigal on all contigs from the current study (with `-m -p meta`). Genes shorter than 90 bp or lacking start/stop codons were discarded. The remaining genes from both sources were pooled and clustered using CD-HIT-EST (parameters: `-c 0.95 -aS 0.90 -G 0 -d 0 -M 0 -T 0`). The longest contigs were used to select representative genes.
MSP RecoveryShotgun reads from the 30 samples were aligned to the non-redundant gene catalog using the Meteor suite, generating a gene abundance matrix (5.7 million genes × 30 samples). Co-abundant genes were grouped into 1,053 Metagenomic Species Pan-genomes (MSPs) using MSPminer.
Taxonomic Annotation of MSPsMAGs representing each species were taxonomically annotated using GTDB-Tk with GTDB release r214. The resulting taxonomy was propagated to the corresponding MSPs.
Phylogenetic Tree ConstructionA set of 39 universal phylogenetic marker genes was extracted from the 1,053 MSPs (or their corresponding MAGs, when available) using fetchMGs. Each marker was independently aligned using MUSCLE, and the alignments were concatenated and trimmed using trimAl (parameter: `-automated1`). A maximum-likelihood phylogenetic tree was constructed with FastTreeMP (parameters: `-gamma -pseudo -spr -mlacc 3 -slownni`).
Mapping rate distribution across public cohortsWe generated mapping rate distribution plots using Meteor2 (default parameters) for PRJEB50625 (cohort used in catalogue assembly).
DOI: 10.3535/1tb-64r-d07
title: Ochlodes Scudder, 1872

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/z7s-ja6-ath
title: Opigena polygona [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/4k8-j33-418
title: Abrostola tripartita (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/yts-8sh-s2t
title: Animalia

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3886/e220321
title: Data and Code for: Mental Accounts and Consumption Sensitivity Across the Distribution of Liquid Assets

description: These files contain the programs and data for the journal article "Mental Accounts and Consumption Sensitivity Across the
Distribution of Liquid Assets",
American Economic Journal: Macroeconomics.<br><br>
description: Bank account holders at a large US financial institution; representative surveys of US households.
description: Confidential data from a financial institution are not provided with these 
files. The files contain a description of how to access this datasets and the code used to process it (see README).<br>
DOI: 10.3535/0cj-7gn-4d5
title: Melitaea cinxia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/qq4-vn9-dxq
title: Leucoma salicis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/nqq-ds4-7ff
title: Ochlodes Scudder, 1872

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/x4j-btf-jmh
title: Pyrausta cingulata Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.