cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57760/sciencedb.32052
title: Evolution of androdioecy in Berchemia (Rhamnaceae) revealed by phylogenomics and ancestral character reconstruction
title: Evolution of androdioecy in Berchemia (Rhamnaceae) revealed by phylogenomics and ancestral character reconstruction

description: In this study, a total of 114 samples from the family Rhamnaceae were collected, representing 40 species and 6 varieties across three tribes. Among them, 111 samples belonging to 37 species and 6 varieties were from the tribe Rhamneae. In addition, three species from the tribes Paliureae and Ventilagineae were collected as outgroups, with one sample per species.Total genomic DNA was extracted from silica gel dried leaf tissue using a modified CTAB method. High-quality DNA was used to construct TruSeq short-insert libraries following the standard Illumina library preparation protocol. The library construction process included DNA fragmentation, end repair, A-tailing, adapter ligation, fragment size selection, and PCR enrichment. Qualified libraries were then sequenced on the Illumina NovaSeq X Plus platform using a paired-end 150 bp strategy (PE150), generating high-quality sequencing data.
description: In this study, a total of 114 samples from the family Rhamnaceae were collected, representing 40 species and 6 varieties across three tribes. Among them, 111 samples belonging to 37 species and 6 varieties were from the tribe Rhamneae. In addition, three species from the tribes Paliureae and Ventilagineae were collected as outgroups, with one sample per species.Total genomic DNA was extracted from silica gel dried leaf tissue using a modified CTAB method. High-quality DNA was used to construct TruSeq short-insert libraries following the standard Illumina library preparation protocol. The library construction process included DNA fragmentation, end repair, A-tailing, adapter ligation, fragment size selection, and PCR enrichment. Qualified libraries were then sequenced on the Illumina NovaSeq X Plus platform using a paired-end 150 bp strategy (PE150), generating high-quality sequencing data.
DOI: 10.57760/sciencedb.26439
title: All genes and DEG in H9c2 cardiomyocytes after FoxP3 overexpression
title: All genes and DEG in H9c2 cardiomyocytes after FoxP3 overexpression

description: The FoxP3 was overexpressed in H9c2 cardiomyocytes, and the transcription pattern was sequenced by MGISEQ-2000 (MGI, China). All the genes and significantly differentially expressed genes were analyzed by R software (v3.61). F indicates the FoxP3-overexpression group, and C indicates the Control group.
description: The FoxP3 was overexpressed in H9c2 cardiomyocytes, and the transcription pattern was sequenced by MGISEQ-2000 (MGI, China). All the genes and significantly differentially expressed genes were analyzed by R software (v3.61). F indicates the FoxP3-overexpression group, and C indicates the Control group.
DOI: 10.57760/sciencedb.32232
title: Atomic structures of reaction pathways from formaldehyde to hydrogen cyanide during ammonia selective catalytic reduction with CuSSZ13 zeolite catalyst
title: Atomic structures of reaction pathways from formaldehyde to hydrogen cyanide during ammonia selective catalytic reduction with CuSSZ13 zeolite catalyst

description: Atomic structures of simulation results using software ORCA. It contains the optimized structures, nudged elastic band (NEB) trajectories, and the final transition states and intermediates of reaction pathways. The reactions considered HCN / CO formation pathways from CH2O during NH3 selective catalytic reduction (SCR) over CuSSZ13 zeolite catalyst. The calculations used a cluster model generated from the original periodic structure. Different active sites were used, including the Z2Cu, Z2Cu-NH3, and ZCu sites. The structures and trajectories together describe different reaction pathways from CH2O and explain how HCN can be formed. The zip files contain the optimized structures or trajectories. The readme.txt file explains how to understand the file/folder names and connect them with reaction pathways.
description: Atomic structures of simulation results using software ORCA. It contains the optimized structures, nudged elastic band (NEB) trajectories, and the final transition states and intermediates of reaction pathways. The reactions considered HCN / CO formation pathways from CH2O during NH3 selective catalytic reduction (SCR) over CuSSZ13 zeolite catalyst. The calculations used a cluster model generated from the original periodic structure. Different active sites were used, including the Z2Cu, Z2Cu-NH3, and ZCu sites. The structures and trajectories together describe different reaction pathways from CH2O and explain how HCN can be formed. The zip files contain the optimized structures or trajectories. The readme.txt file explains how to understand the file/folder names and connect them with reaction pathways.
DOI: 10.15468/dl.ebcuas
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gloydius qinlingensis)",
 "Country is one of (China, India, Indonesia, Pakistan, Bangladesh, Japan, Philippines, Viet Nam, Türkiye, Iran (Islamic Republic of), Thailand, Myanmar, Korea, Republic of, Korea (Democratic People’s Republic of), Iraq, Afghanistan, Saudi Arabia, Uzbekistan, Malaysia, Yemen, Nepal, Sri Lanka, Kazakhstan, Syrian Arab Republic, Cambodia, Jordan, Azerbaijan, United Arab Emirates, Tajikistan, Israel, Lao People’s Democratic Republic, Lebanon, Kyrgyzstan, Turkmenistan, Singapore, Oman, Palestine, State of, Kuwait, Georgia, Mongolia, Armenia, Qatar, Bahrain, Timor-Leste, Cyprus, Bhutan, Maldives, Brunei Darussalam)",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2025",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007277-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15161/oar.it/855mj-0w343
title: F326 Ascoli Piceno - Modello geologico 3D

description: Il modello geologico 3D del Foglio 326 Ascoli Piceno del progetto CARG include 35 superfici di faglia e superfici di tetto delle formazioni geologiche chiave. La costruzione del modello è stata guidata dall’interpretazione di ventotto profili sismici, conversione in profondità e dalla successiva realizzazione di sezioni geologiche principali, di cui 11 sono state bilanciate e validate. Le superfici sono state interpolate integrando alle sezioni geologiche bilanciate delle sezioni di supporto per rappresentare al meglio la variabilità spaziale delle strutture geologiche. Minima elevazione del modello:  -14595.9 metri s.l.m.
DOI: 10.15161/oar.it/tdq5a-nmx86
title: F326 Ascoli Piceno - Modello geologico 3D

description: Il modello geologico 3D del Foglio 326 Ascoli Piceno del progetto CARG include 35 superfici di faglia e superfici di tetto delle formazioni geologiche chiave. La costruzione del modello è stata guidata dall’interpretazione di ventotto profili sismici, conversione in profondità e dalla successiva realizzazione di sezioni geologiche principali, di cui 11 sono state bilanciate e validate. Le superfici sono state interpolate integrando alle sezioni geologiche bilanciate delle sezioni di supporto per rappresentare al meglio la variabilità spaziale delle strutture geologiche. Minima elevazione del modello:  -14595.9 metri s.l.m.
DOI: 10.21227/f4e7-p827
title: "Career Literature and Course Programs Dataset for Ugandan Public Universities"

description: "The dataset comprises career literature and information about course programs in Uganda which can be used to provide career guidance for individuals. It was created through web scraping of official websites of public universities and from data from the Onet databases. It can be used by career advisors and mentors, university intake officials, AI researchers whose field is education and job market prediction, and also supports research in NLP and LLM fine-tuning. "
DOI: 10.6084/m9.figshare.30336400.v1
title: Data of all figures

description: Sepsis, a life-threatening organ dysfunction caused by dysregulated host responses to infection, often leads to sepsis-associated acute lung injury (SALI), a major contributor to mortality. Spermidine (SPD), a natural polyamine with anti-inflammatory and metabolic regulatory properties, has emerged as a potential nutritional adjunct for sepsis management. However, whether and how SPD ameliorates SALI remains to be elucidated. Here, cecal ligation and puncture (CLP) was performed in rats to simulate sepsis. Rat survival, lung injury score, Dry/Wet ratio, histopathology, cytokine levels and immunohistochemical analysis were analyzed to evaluate SPD’s effects on SALI. Targeted metabolomics, molecular docking and cellular thermal shift assay (CETSA) identified AMP-activated protein kinase (AMPK) as an underlying target of SPD’s action. <i>In vitro</i> investigations were based on lipopolysaccharide (LPS)-stimulated bone marrow-derived macrophages (BMDMs), with flow cytometry assessing apoptosis. AMPK inhibitor (Compound C) and downstream signaling were examined <i>in vivo</i> and <i>in vitro</i> through q-PCR and Western blot experiments. Consequently, SPD improved rat survival, reduced lung injury, and decreased pro-inflammatory cytokines in CLP rats. Metabolomics, molecular docking and CETSA suggested AMPK-mediated energy metabolism modulation. Mechanistically, SPD attenuated necroptosis via AMPK/RIPK1/MLKL signaling. Moreover, Compound C counteracted the protective effect of SPD on SALI <i>in vivo</i> and <i>in vitro</i>. Our findings evidence that SPD significantly ameliorates SALI via the regulation of AMPK-mediated necroptosis. SPD supplementation may serve as a complementary therapeutic approach, warranting further investigation in subsequent clinical trials for sepsis treatment.
DOI: 10.15161/oar.it/aqrn1-h0649
title: F325 Visso – Modello geologico 3D

description: Il modello geologico 3D del Foglio Visso 325 del progetto CARG comprende 178 faglie e le principali formazioni geologiche. Il modello è stato generato tramite l'analisi di 13 sezioni geologiche bilanciate e l'interpretazione di due linee sismiche. Le superfici stratigrafiche sono state interpolate dagli orizzonti delle sezioni geologiche, integrate con sezioni geologiche di supporto per garantire una precisa variabilità delle strutture nel modello 3D. Minima elevazione del modello: - 8.465 metri s.l.m.
DOI: 10.15161/oar.it/49q6s-b3t26
title: F325 Visso – Modello geologico 3D

description: Il modello geologico 3D del Foglio Visso 325 del progetto CARG comprende 178 faglie e le principali formazioni geologiche. Il modello è stato generato tramite l'analisi di 13 sezioni geologiche bilanciate e l'interpretazione di due linee sismiche. Le superfici stratigrafiche sono state interpolate dagli orizzonti delle sezioni geologiche, integrate con sezioni geologiche di supporto per garantire una precisa variabilità delle strutture nel modello 3D. Minima elevazione del modello: - 8.465 metri s.l.m.
DOI: 10.15468/dl.djuuv5
title: Occurrence Download

description: A dataset containing 2967139917 species occurrences available in GBIF matching the query:
{
 "Year" : [
 "2004-2025"
 ]
}

 The dataset includes 2967139917 records from 64409 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007114-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15472165
title: Noble gas analysis with Helic MC+ mass spectrometer
DOI: 10.57967/hf/6104
title: book-of-garden-of-mind
DOI: 10.57967/hf/6349
title: book-of-garden-of-mind
DOI: 10.15468/dl.ga8ach
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathytroctes microlepis Günther, 1878",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.9648 19.8496,26.9648 19.8496,26.9648 10.8496,35.9648 10.8496,35.9648 19.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010675-250525065834625/datasets/export for details.
DOI: 10.15468/dl.zdvhkj
title: Occurrence Download

description: A dataset containing 6017 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Apera interrupta (L.) P.Beauv.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 6017 records from 276 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010676-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vxmzam
title: Occurrence Download

description: A dataset containing 2219 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coscinodon calyptratus"
 ]
}

 The dataset includes 2219 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005919-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hkhacb
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Eragrostis pilosa",
 "Year 1970-2000"
 ]
}

 The dataset includes 131 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005920-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.taa75w
title: Occurrence Download

description: A dataset containing 5990 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Montifringilla adamsi"
 ]
}

 The dataset includes 5990 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005922-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18344505
title: Pulse repetition interval modulation types
DOI: 10.5281/zenodo.18344504
title: Pulse repetition interval modulation types
DOI: 10.15468/dl.4dpm4t
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((88.60111000000001 24.825288, 88.523742 24.819711, 88.4483 24.803119, 88.37665800000001 24.775923, 88.310596 24.738802, 88.251749 24.692676, 88.20157 24.638691, 88.161289 24.578185, 88.131891 24.512656, 88.11408299999999 24.443723, 88.10828600000001 24.373089, 88.11462299999999 24.302493, 88.132919 24.233672, 88.162705 24.168317, 88.20323399999999 24.108031, 88.25349900000001 24.054289, 88.31225999999999 24.008407, 88.378074 23.971505, 88.44932799999999 23.944484, 88.524283 23.928004, 88.60111000000001 23.922465, 88.677937 23.928004, 88.752892 23.944484, 88.824146 23.971505, 88.88996 24.008407, 88.94872100000001 24.054289, 88.998986 24.108031, 89.03951499999999 24.168317, 89.069301 24.233672, 89.087597 24.302493, 89.093934 24.373089, 89.088137 24.443723, 89.070329 24.512656, 89.040931 24.578185, 89.00064999999999 24.638691, 88.95047099999999 24.692676, 88.89162399999999 24.738802, 88.82556200000001 24.775923, 88.75391999999999 24.803119, 88.678478 24.819711, 88.60111000000001 24.825288))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005923-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pegk89
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((88.60111000000001 24.825288, 88.523742 24.819711, 88.4483 24.803119, 88.37665800000001 24.775923, 88.310596 24.738802, 88.251749 24.692676, 88.20157 24.638691, 88.161289 24.578185, 88.131891 24.512656, 88.11408299999999 24.443723, 88.10828600000001 24.373089, 88.11462299999999 24.302493, 88.132919 24.233672, 88.162705 24.168317, 88.20323399999999 24.108031, 88.25349900000001 24.054289, 88.31225999999999 24.008407, 88.378074 23.971505, 88.44932799999999 23.944484, 88.524283 23.928004, 88.60111000000001 23.922465, 88.677937 23.928004, 88.752892 23.944484, 88.824146 23.971505, 88.88996 24.008407, 88.94872100000001 24.054289, 88.998986 24.108031, 89.03951499999999 24.168317, 89.069301 24.233672, 89.087597 24.302493, 89.093934 24.373089, 89.088137 24.443723, 89.070329 24.512656, 89.040931 24.578185, 89.00064999999999 24.638691, 88.95047099999999 24.692676, 88.89162399999999 24.738802, 88.82556200000001 24.775923, 88.75391999999999 24.803119, 88.678478 24.819711, 88.60111000000001 24.825288))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005925-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ewkgze
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Festuca brachyphylla",
 "Year 1960-2026"
 ]
}

 The dataset includes 36 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005926-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w58jbh
title: Occurrence Download

description: A dataset containing 14169627 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 14169627 records from 7589 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005890-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gh2bc6
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macroptilium atropurpureum",
 "Country is Palau",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024725-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cgmmt7
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macroptilium atropurpureum",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 29 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024723-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2u6nfb
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macroptilium atropurpureum",
 "Country is Niue",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024724-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pntdas
title: Occurrence Download

description: A dataset containing 15633 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Machine Observation",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 1000-2025"
 ]
}

 The dataset includes 15633 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015990-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18739/a22r3nz79
title: Organic Carbon Content in the Subsurface Sediments of Floodplains Across the Yukon River Basin, Alaska, 2022

description: The carbon stored in permafrost deposits represents the single largest soil carbon reservoir on Earth. Concerns about the instability and dynamics of this carbon reservoir during permafrost thaw associated with polar amplification of climate warming contribute a large part of the uncertainty in forecasting future climate. We have been studying the carbon dynamics of permafrost deposits contained in the floodplains of large Arctic rivers. Across Arctic floodplains, accelerating bank erosion can liberate permafrost organic carbon (OC) as carbon dioxide (CO2) or methane (CH4), and/or redeposit it in fluvial units. These different fates have very different implications for climate feedback. Determining OC stocks and their dynamics in Arctic floodplain cutbanks and point bars, as well as the OC load in fluvial transport, is essential to better understand the recycling and export of permafrost carbon. As part of a National Science Foundation (NSF) funded project to better understand the effects of erosion in the Yukon River Basin, floodplain sediments were collected between June and September 2022 at two locations underlain by discontinuous permafrost within the Yukon River Basin in Alaska: Beaver (65.700° North (N), 156.387° West (W)) and Huslia (66.362° N, 147.398° W). This dataset mainly reports OC contents for collected subsurface sediments in floodplains measured by elemental analyzer.
 The coupled mercury content can be found in Isabel et al., 2024 (https://doi.org/10.18739/A2RF5KH5J).
DOI: 10.15468/dl.3j62xj
title: Occurrence Download

description: A dataset containing 599112 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is eButterfly Surveys"
 ]
}

 The dataset includes 599112 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015976-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.