cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19806073
title: Long-term metabolic fate and mortality in obesity without metabolic syndrome

description: Obesity and metabolic syndrome (MetS) are known to expose to atrial fibrillation (AF), cardiovascular diseases (CVD) and mortality. Metabolically healthy obesity refers to obesity without MetS. This study aimed to investigate how obesity and MetS modify the risk of CVD, AF and mortality in very long-time follow-up. Finnish middle-aged subjects (<i>n</i> = 1045) were grouped into four subgroups according to the presence of obesity and MetS. CVD events and AF were followed for 24 years and total mortality for 30 years. Moreover, 600 available patients had a follow-up visit for metabolic examinations after approximately 22 years. One-hundred and sixty-two (30%) subjects without obesity or MetS died during the follow-up. Ninety-two (17%) of the patients in this group had a CVD event and 58 (11%) were diagnosed with AF. As compared to them, obese subjects without MetS had similar metabolic fate and mortality (mortality 26 (38%), <i>p</i> = .143; CVD event 12 (18%), <i>p</i> = .858 and AF 7 (10%), <i>p</i> = .912, respectively), whereas subjects with obesity and MetS had greater mortality (102 (49%), <i>p</i> p p p p p = .606). Of the 40 subjects with obesity but without MetS at baseline and available for the follow-up visit, 15 (38%) were metabolically healthy at the follow-up visit. In the present long-term follow-up study, the presence of MetS, but not obesity only, implies a greater risk of mortality and CVD. The risk of AF is increased only in subjects with both obesity and MetS. However, obesity without MetS tends to progress eventually to obesity with MetS. Key messagesThe presence of metabolic syndrome (MetS), but not obesity only, entails a greater risk of mortality and cardiovascular diseases.The risk of atrial fibrillation is increased only in subjects with both obesity and MetS.Obesity without MetS tends to progress eventually to obesity with MetS. The presence of metabolic syndrome (MetS), but not obesity only, entails a greater risk of mortality and cardiovascular diseases. The risk of atrial fibrillation is increased only in subjects with both obesity and MetS. Obesity without MetS tends to progress eventually to obesity with MetS.
DOI: 10.6084/m9.figshare.19806073.v1
title: Long-term metabolic fate and mortality in obesity without metabolic syndrome

description: Obesity and metabolic syndrome (MetS) are known to expose to atrial fibrillation (AF), cardiovascular diseases (CVD) and mortality. Metabolically healthy obesity refers to obesity without MetS. This study aimed to investigate how obesity and MetS modify the risk of CVD, AF and mortality in very long-time follow-up. Finnish middle-aged subjects (<i>n</i> = 1045) were grouped into four subgroups according to the presence of obesity and MetS. CVD events and AF were followed for 24 years and total mortality for 30 years. Moreover, 600 available patients had a follow-up visit for metabolic examinations after approximately 22 years. One-hundred and sixty-two (30%) subjects without obesity or MetS died during the follow-up. Ninety-two (17%) of the patients in this group had a CVD event and 58 (11%) were diagnosed with AF. As compared to them, obese subjects without MetS had similar metabolic fate and mortality (mortality 26 (38%), <i>p</i> = .143; CVD event 12 (18%), <i>p</i> = .858 and AF 7 (10%), <i>p</i> = .912, respectively), whereas subjects with obesity and MetS had greater mortality (102 (49%), <i>p</i> p p p p p = .606). Of the 40 subjects with obesity but without MetS at baseline and available for the follow-up visit, 15 (38%) were metabolically healthy at the follow-up visit. In the present long-term follow-up study, the presence of MetS, but not obesity only, implies a greater risk of mortality and CVD. The risk of AF is increased only in subjects with both obesity and MetS. However, obesity without MetS tends to progress eventually to obesity with MetS. Key messagesThe presence of metabolic syndrome (MetS), but not obesity only, entails a greater risk of mortality and cardiovascular diseases.The risk of atrial fibrillation is increased only in subjects with both obesity and MetS.Obesity without MetS tends to progress eventually to obesity with MetS. The presence of metabolic syndrome (MetS), but not obesity only, entails a greater risk of mortality and cardiovascular diseases. The risk of atrial fibrillation is increased only in subjects with both obesity and MetS. Obesity without MetS tends to progress eventually to obesity with MetS.
DOI: 10.23728/b2share.664840fae08240978cef3bc9833f5fc7
title: Efficient high-power sub-50-fs gigahertz repetition rate diode-pumped solid-state laser

description: These files contain the data used to obtain the plots displayed in Fig. 3 of the article.
DOI: 10.18739/a2639k65m
title: Greenland Ice Sheet Project Two (GISP2) ice core methane (CH4) and nitrogen isotopic composition (d15N-N2), 13-50 ka BP

description: We present high resolution measurements of atmospheric methane (CH4) and nitrogen isotopic composition (d15N-N2) in the Greenland Ice Sheet Project Two (GISP2) Ice core. The data span Marine Isotope Stage 3, 13 to 50 thousand years (ka) before present. These datasets enhance our understanding of abrupt climate variability during the last glacial period, with a focus on Heinrich events 1 through 5. CH4 data were analyzed between 2014 and 2020 via an established wet extraction technique (Mitchell et al. 2013). Concentrations were determined via gas chromatography measurements on an Agilent 6890N and calibrated to the NOAA04 scale. d15N-N2 data were measured between 2017 and 2020 on a Finnigan MAT Delta XP via an established technique (Petrenko et al. 2006). The methane data allow for gas-phase synchronization of the GISP2 ice core to other polar ice cores from Greenland and Antarctica. The nitrogen isotopic composition data allow for reconstruction of abrupt Greenland surface climate variations.
DOI: 10.5281/zenodo.6567596
title: femMCat_SGB_repGenomes20May2022

description: Representative genome DB for femMCat
DOI: 10.5281/zenodo.6567595
title: femMCat_SGB_repGenomes20May2022

description: Representative genome DB for femMCat
DOI: 10.18112/openneuro.ds004094.v1.0.1
title: Tesser
DOI: 10.18739/a2xp6v48q
title: Ambient air mole fractions of selected volatile organic compounds measured in the University of Colorado container during the 2019-2020 MOSAiC (Multidisciplinary drifting Observatory for the Study of Arctic Climate) expedition

description: This dataset contains ambient air mole fractions of selected volatile organic compounds (propane, isobutane, n-butane, isopentane, isoprene, n-pentane, benzene, and toluene) measured at a 3-hr time resolution in the Central Arctic during the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) expedition. The backbone of MOSAiC was the year-round operation of the Research Vessel Polarstern that drifted with the sea ice across the Central Arctic from October 2019 to September 2020. Measurements were performed onboard Polarstern in the University of Colorado sea-container laboratory installed below deck in the forward cargo hold. A ~50 meter (m) long sampling line was deployed from the container to the bow crane to allow measurements forward of the vessel.
DOI: 10.3886/e113981v1-118702
title: Replication data for: Why Does China Allow Freer Social Media? Protests versus Surveillance and Propaganda

description: In this paper, we document basic facts regarding public debates about controversial political issues on Chinese social media. Our documentation is based on a dataset of 13.2 billion blog posts published on Sina Weibo--the most prominent Chinese microblogging platform--during the 2009-2013 period. Our primary finding is that a shockingly large number of posts on highly sensitive topics were published and circulated on social media. For instance, we find millions of posts discussing protests, and these posts are informative in predicting the occurrence of specific events. We find an even larger number of posts with explicit corruption allegations, and that these posts predict future corruption charges of specific individuals. Our findings challenge a popular view that an authoritarian regime would relentlessly censor or even ban social media. Instead, the interaction of an authoritarian government with social media seems more complex.
DOI: 10.6084/m9.figshare.19806037
title: Short Linear Motifs Orchestrate Functioning of Human Proteins during Embryonic Development, Redox Regulation, and Cancer

description: Data on sequence alignment and gene ontology analysis of short linear motifs, which were identified in human proteins involved in embryonic development, cancer and redox regulation
DOI: 10.6084/m9.figshare.19806037.v1
title: Short Linear Motifs Orchestrate Functioning of Human Proteins during Embryonic Development, Redox Regulation, and Cancer

description: Data on sequence alignment and gene ontology analysis of short linear motifs, which were identified in human proteins involved in embryonic development, cancer and redox regulation
DOI: 10.3886/e109703v2-118703
title: Replication data and code for: Rural Roads and Local Economic Development

description: These files contain the data and code for the journal article "Rural Roads and Local Economic Development," American Economic Review. Please start with the readme, which contains a detailed description of all files in this repository and instructions for the replication of results in the article. <br><br>Abstract<br>Nearly one billion people worldwide live in rural areas without access to national paved road networks. We estimate the impacts of India’s $40 billion national rural road construction program using a fuzzy regression discontinuity design and comprehensive household and firm census microdata. Four years after road construction, the main effect of new feeder roads is to facilitate the movement of workers out of agriculture. However, there are no major changes in agricultural outcomes, income or assets. Employment in village firms expands only slightly. Even with better market connections, remote areas may continue to lack economic opportunities.<br><br>
description: Presence of Common Scales: Indian National Classification of Occupations (2004)
description: The main analysis sample is comprised of villages that did not have a paved approach road at the start of the road construction program and whose baseline populations were close to the cutoffs used for prioritization.
description: Villages in India without paved roads in 2000. Smallest Geographic Unit: Village
DOI: 10.6084/m9.figshare.19799374
title: Mt_africanum_GCF_000195955.2.final.vcf.genozip

description: Multisample VCF consisting of 10,248 <em>Mycobacterium tuberculosis</em> samples. Compressed with genozip (https://genozip.readthedocs.io/)
DOI: 10.6084/m9.figshare.19799374.v1
title: Mt_africanum_GCF_000195955.2.final.vcf.genozip

description: Multisample VCF consisting of 10,248 <em>Mycobacterium tuberculosis</em> samples. Compressed with genozip (https://genozip.readthedocs.io/)
DOI: 10.5281/zenodo.6567669
title: Simulation results of the technology diffusion model for electrolysis capacity

description: This upload contains the pre-run simulation output of the technology diffusion model for the article: Odenweller, A., Ueckerdt, F., Nemet, G. F., Jensterle, M., and Luderer, G.: "Probabilistic feasibility space of scaling up green hydrogen supply". You may use the files to run the model code (available on GitHub) in reproduction mode, which reproduces all figures of the article without having to run the time-consuming simulation yourself. All files are provided in the rds format. Contents of this upload: 01_conventional_growth_parameters.rds - Parameters of the distributions in the conventional growth case 02_conventional_growth_sample.rds - Sample of the distributions in the conventional growth case 03_conventional_growth_results.rds - Simulation results of model in the conventional growth case 04_unconventional_growth_parameters.rds - Parameters of the distributions in the unconventional growth case 05_unconventional_growth_sample.rds - Sample of the distributions in the unconventional growth case 06_unconventional_growth_results.rds - Simulation results of model in the unconventional growth case
description: Revision 1
DOI: 10.5281/zenodo.5933121
title: Simulation results of the technology diffusion model for electrolysis capacity

description: This upload contains the pre-run simulation output of the technology diffusion model for the article: Odenweller, A., Ueckerdt, F., Nemet, G. F., Jensterle, M., and Luderer, G.: "Probabilistic feasibility space of scaling up green hydrogen supply". You may use the files to run the model code (available on GitHub) in reproduction mode, which reproduces all figures of the article without having to run the time-consuming simulation yourself. All files are provided in the rds format. Contents of this upload: 01_conventional_growth_parameters.rds - Parameters of the distributions in the conventional growth case 02_conventional_growth_sample.rds - Sample of the distributions in the conventional growth case 03_conventional_growth_results.rds - Simulation results of model in the conventional growth case 04_unconventional_growth_parameters.rds - Parameters of the distributions in the unconventional growth case 05_unconventional_growth_sample.rds - Sample of the distributions in the unconventional growth case 06_unconventional_growth_results.rds - Simulation results of model in the unconventional growth case
description: Revision 1
DOI: 10.25345/c5db7vt89
title: MassIVE MSV000089507 - Proximity mapping of the different RAD51 paralogs identifies novel functionally and clinically relevant partners
title: Homologous recombination (HR) plays an essential role in the maintenance of genome stability by promoting the repair of cytotoxic DNA double strand breaks (DSBs). More recently, the HR pathway has emerged as an integral component of the response to replication stress, in part by protecting stalled replication forks from nucleolytic degradation. In that regard, the mammalian RAD51 paralogs (RAD51B, RAD51C, RAD51D, XRCC2, and XRCC3) have been involved in both HR-mediated DNA repair and collapsed replication fork resolution. Still, it remains largely obscure how they participate in both processes, thereby maintaining genome stability and preventing cancer development. To gain better insight into their contribution in cellulo, we mapped the proximal interactome of the classical RAD51 paralogs using the BioID approach. Aside from identifying the well-established BCDX2 and CX3 sub-complexes, the spliceosome machinery emerged as an integral component of our proximal mapping, suggesting a crosstalk between this pathway and the RAD51 paralogs. Furthermore, we noticed that factors involved RNA metabolic pathways are significantly modulated within the BioID of the classical RAD51 paralogs upon exposure to hydroxyurea (HU), pointing towards a direct contribution of RNA processing during replication stress. Importantly, several members of these pathways have prognosis potential in breast cancer (BC), where their RNA expression correlates with poorer patient outcome. Collectively, this study uncovers novel functionally relevant partners of the different RAD51 paralogs in the maintenance of genome stability and could be used as biomarker for the prognosis of BC.
DOI: 10.5281/zenodo.6568024
title: Spectral characteristics of ionospheric disturbances over the Southwestern Pacific from the January 15, 2022 Tonga eruption and tsunami

description: This dataset contains the filtered ionospheric total electron content values used in the manuscript of the same name.
DOI: 10.5281/zenodo.6568044
title: Specimen alignment with limited point-based homology: 3D morphometrics of disparate bivalve shells (Mollusca: Bivalvia)

description: Supplemental data and code for Edie, Collins, and Jablonski, Specimen alignment with limited point-based homology: 3D morphometrics of disparate bivalve shells (Mollusca: Bivalvia).
description: added function 'points_along_plane'
DOI: 10.5281/zenodo.6326530
title: Specimen alignment with limited point-based homology: 3D morphometrics of disparate bivalve shells (Mollusca: Bivalvia)

description: Supplemental data and code for Edie, Collins, and Jablonski, Specimen alignment with limited point-based homology: 3D morphometrics of disparate bivalve shells (Mollusca: Bivalvia).
description: added function 'points_along_plane'
DOI: 10.5281/zenodo.6568016
title: Data for Scan-Centric, Frequency-Based Method for Characterizing Peaks from Direct Injection Fourier transform Mass Spectrometry Experiments

description: Input and output files from the manuscript analysis titled "Scan-Centric, Frequency-Based Method for Characterizing Peaks from Direct Injection Fourier transform Mass Spectrometry Experiments"
DOI: 10.5281/zenodo.6462196
title: Data for Scan-Centric, Frequency-Based Method for Characterizing Peaks from Direct Injection Fourier transform Mass Spectrometry Experiments

description: Input and output files from the manuscript analysis titled "Scan-Centric, Frequency-Based Method for Characterizing Peaks from Direct Injection Fourier transform Mass Spectrometry Experiments"
DOI: 10.17604/qqq0-p310
title: Data for Interannual variability in the source location of North African dust transported to the Amazon

description: Here, we present the data and MixSIAR code that corresponds to the manuscript “Interannual variability in the source location of North African dust transported to the Amazon.” African dust is seasonally transported to the western Tropical Atlantic Ocean (TAO) and South America (SA), including the Amazon Basin. Leading hypotheses suggest that either the Western North African potential source area (PSA) or the Central North African PSA (e.g., Bodélé Depression) is the main source of dust transported to the Amazon. However, these notions remain largely untested with geochemical data. Here, we present a more nuanced hypothesis: both PSAs contribute dust to SA with precipitation and wind patterns determining the dominant source. Our premise is based upon two years of isotopic measurements (strontium and neodymium) of African dust collected in SA integrated into a statistical model in a Bayesian framework. With this approach, we identified strong interannual variability: while the Central PSA supplied 48% in winter 2016, a region within the Western PSA, which we suggest may be located near Niger, Mali, and Algeria accounts for 54% of transport in winter 2014. We propose the variability is due to the strength of the Libyan High and differing amounts of precipitation in the Gulf of Guinea and TAO between the two years. We anticipate that our work will lead to better constraints of dust nutrient deposition and subsequent carbon sequestration in the TAO and Amazon as well as improved model predictions of dust transport. Due to the connection between dust, precipitation, and wind patterns, our work can be used to link changes in climate with past changes in the source and magnitude of dust transported to the Amazon and TAO. 

This data is associated with the article: Barkley, A.E., Pourmand, A., Longman, J., Sharifi, A., Prospero, J.M., Panechou, K., Bakker, N., Drake, N., Guioiseau, D., Gaston, C.J. Interannual variability in the source location of North African dust transported to the Amazon. Submitted to the Proceedings of the National Academy of Sciences
description: ## Description of the datasets
The `data/` folder contains three data sets. `ds01` contains the data collected in this study from 34 samples including the dates of collection and Sr and eNd isotopic ratios. 

## Metadata of the trajectory file
ds01 is a *csv* file that contain 12 columns. Column 1 presents the date in the format ‘MM:DD:YYYY’ (e.g., 01-30-2014) that sample collection was initiated. Column 2 presents the date ‘MM:DD:YYYY’ (e.g., 01-31-2014) sample collection ended. Column 3 shows the mean 87Sr/86Sr ratio (unitless) measured and Column 4 shows the 95% confidence interval (CI) for each sample run in triplicate. Column 5 shows the 143Nd/144Nd isotopic ratio reported as epsilon neodymium (unitless) and Column 6 presents the 95% CI of the mean epsilon Nd. Columns 7, 9, and 11 show the lead (Pb) isotopic ratios normalized to 204Pb with their corresponding 95% CI in Columns 8, 10, and 12.
DOI: 10.17864/1947.000379
title: Legibility of Chinese-English direction signs: how the spatial presentation of bilingual typography in two different scripts affects sign legibility

description: Chinese-English bilingual traffic signs (CEBTS) are widely applied in public spaces in China. However, few studies have addressed the design of bilingual signs using two different scripts. The main research question is how can sign legibility be improved by the spatial presentation of bilingual location name(s) comprised of Chinese and English. The dataset was collected to examine the effects of adjusting the spatial presentation of Chinese/English legends on CEBTS legibility. The adjustments include changes in connecting spacing (vertical distance connects Chinese/English into a bilingual legend)(Study A), separating spacing (vertical spacing separates bilingual legends) (Study B), and text alignment (Study C).
DOI: 10.5281/zenodo.6568081
title: MIME and SIMITATE for MINT

description: Data sets for anonymous submission
DOI: 10.5281/zenodo.6568053
title: targets for Scan-Centric, Frequency-Based Method for Characterizing Peaks from Direct Injection Fourier transform Mass Spectrometry Experiments

description: _targets folder for the scan-centric, frequency-based peak-characterization manuscript
DOI: 10.6073/pasta/5dfcfd6c88eb8f4f674ef3f8fcff9d72
title: Weather station data from three locations at Lake Sunapee (NH, USA), July 2019 – December 2021

description: Davis weather stations, owned and operated by the Lake Sunapee Protective Association (LSPA), were installed at three locations near the shoreline of Lake Sunapee (NH, USA) in July 2019. These stations collect data at 30-minute intervals for a number of weather and meteorological variables continuously throughout the year. In addition to the measured variables, a number of derived variables are also recorded at the same time intervals. Data are manually downloaded from Davis’s WeatherLink website every quarter, then collated and QAQC’d to remove any obvious outliers or recording errors in the R programming language.
DOI: 10.22003/xfel.eu-data-002850-00
title: Exploring Electronic and Nuclear Structural Changes due to Photoexcitation in Water Oxidation Model Clusters and Catalysts by Simultaneous X-ray Emission and Scattering Measurements
DOI: 10.22003/xfel.eu-data-002829-00
title: Signal transduction of blue-light photoreceptors
DOI: 10.22003/xfel.eu-data-003225-00
title: FXE in-house research
DOI: 10.21227/h923-ca30
title: SUPPLEMENTARY DATA OF PAPER:DPb-MOPSO: A Dynamic Pareto bi-level Multi-Objective Particle Swarm Optimization Algorithm

description: This study proposes a Dynamic Pareto bi-level Multi-Objective Particle Swarm Optimization (DPb-MOPSO) algorithm including two parallel optimization levels. At the first level, all solutions are managed in a single search space. When a dynamic change is successfully detected in the objective values, the Pareto ranking operator is used to enable a multiple sub-swarm’ subdivisions and processing which drives the second level of enhanced exploitation. A dynamic handling strategy based on random detectors is used to track the changes of the objective function due to time-varying parameters. A response strategy consisting in re-evaluate all unimproved solutions and replacing them with newly generated ones is also implemented.  The DPb-MOPSO system is tested on a set of DMOPs with different types of time-varying Pareto Optimal Set (POS) and Pareto Optimal Front (POF).  Inverted generational distance (IGD), mean inverted generational distance (MIGD), and hypervolume difference (HVD) metrics are used to assess the DPb-MOPSO performances.