cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.q5yk7u
title: Occurrence Download

description: A dataset containing 24357 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Juniperus phoenicea L."
 ]
}

 The dataset includes 24357 records from 142 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000646-170627171947987/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3u4ya
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nototriche armeriifolia A.W.Hill"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0178903-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.db4nby
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mikania chaetoloba Pruski"
 ]
}

 The dataset includes 10 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0178904-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h93asb
title: Occurrence Download

description: A dataset containing 881699 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Haematopodidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 881699 records from 201 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061248-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmha4g
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-88.29602 29.87685,-85.54285 29.57465,-85.16931 29.63177,-85.56921 30.78314,-88.29602 30.71161,-88.29602 29.87685))",
 "HasCoordinate is true",
 "TaxonKey is Dermochelys coriacea (Vandelli, 1761)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 34 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084680-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zz5un5
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-18.80859375 -1.0546279422758742, -18.80859375 31.052933985705163, 18.984375 31.052933985705163, 18.984375 -1.0546279422758742, -18.80859375 -1.0546279422758742))",
 "TaxonKey is Cola gigantea var. gigantea"
 ]
}

 The dataset includes 63 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000646-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ibi1a
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tamiasciurus mearnsi (Townsend, 1897)"
 ]
}

 The dataset includes 36 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084684-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ub3ybs
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epipactis ×graberi A.Camus"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197656-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wir2vj
title: Occurrence Download

description: A dataset containing 470 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solidago serotina Aiton"
 ]
}

 The dataset includes 470 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000646-170925132151566/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3rqha2
title: Occurrence Download

description: A dataset containing 6476 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sapajus apella (Linnaeus, 1758)"
 ]
}

 The dataset includes 6476 records from 148 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197673-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.urnanm
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Thaliacea"
 ]
}

 The dataset includes 50 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084689-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.89w92t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epipactis guegelii Robatsch"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197660-230224095556074/datasets/export for details.
DOI: 10.15468/dl.svayay
title: Occurrence Download

description: A dataset containing 309 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Conepatus semistriatus (Boddaert, 1785)"
 ]
}

 The dataset includes 309 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000646-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zvsqeq
title: Occurrence Download

description: A dataset containing 955 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypogastrura viatica (Tullberg, 1872)"
 ]
}

 The dataset includes 955 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084691-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kynsc6
title: Occurrence Download

description: A dataset containing 72407 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Pteropodidae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 72407 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000646-171109162308116/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.44hfh7
title: Occurrence Download

description: A dataset containing 399780 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Senegal",
 "Year 1988-2023"
 ]
}

 The dataset includes 399780 records from 244 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197690-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5auvvw
title: Occurrence Download

description: A dataset containing 1342 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Proisotoma minuta (Tullberg, 1871)"
 ]
}

 The dataset includes 1342 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084692-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7jp9e7
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paullinia manarae Steyerm."
 ]
}

 The dataset includes 8 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0178905-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9srtrg
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nothoscordum gaudichaudianum Kunth"
 ]
}

 The dataset includes 43 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000647-150304104939900/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yjrqqy
title: Occurrence Download

description: A dataset containing 543 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((39.22258 -15.10798, 39.24826 -15.10869, 39.25245 -15.11285, 39.26909 -15.11215, 39.27258 -15.10869, 39.27917 -15.10833, 39.27973 -15.11471, 39.28277 -15.11862, 39.28399 -15.13243, 39.28971 -15.1339, 39.29362 -15.13693, 39.29929 -15.13839, 39.30057 -15.14804, 39.31193 -15.16029, 39.3125 -15.17917, 39.28951 -15.17978, 39.28549 -15.18272, 39.27284 -15.18395, 39.26883 -15.18688, 39.26343 -15.18843, 39.26188 -15.19383, 39.24964 -15.20725, 39.24367 -15.20895, 39.23966 -15.21188, 39.2341 -15.21347, 39.23252 -15.22433, 39.21667 -15.225, 39.21008 -15.22465, 39.20659 -15.22119, 39.19758 -15.22048, 39.18786 -15.21079, 39.1875 -15.20833, 39.18715 -15.19341, 39.18369 -15.18992, 39.18333 -15.18333, 39.18369 -15.18091, 39.18715 -15.17742, 39.18785 -15.15245, 39.18369 -15.14826, 39.18298 -15.14341, 39.17918 -15.13958, 39.18715 -15.13159, 39.1875 -15.10417, 39.18817 -15.08831, 39.19799 -15.08688, 39.20301 -15.08322, 39.20417 -15.07917, 39.20771 -15.08008, 39.20833 -15.09167, 39.21079 -15.09202, 39.21631 -15.09758, 39.21702 -15.10246, 39.22258 -15.10798))"
 ]
}

 The dataset includes 543 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197689-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rtthv9
title: Occurrence Download

description: A dataset containing 2736 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceratitis capitata (Wiedemann, 1824)"
 ]
}

 The dataset includes 2736 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084698-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mmqjda
title: Occurrence Download

description: A dataset containing 492 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Characidium zebra Eigenmann, 1909"
 ]
}

 The dataset includes 492 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000647-150306150734599/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2uwfmq
title: Occurrence Download

description: A dataset containing 2508487 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "GadmGid is USA.33_1",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 2508487 records from 301 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005825-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s2ypge
title: Occurrence Download

description: A dataset containing 3397 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bird survey at the permanent sample plots in the Prioksko-Terrasnyi Biosphere Reserve recorded in Chronicles of Nature"
 ]
}

 The dataset includes 3397 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084714-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7o8y77
title: Occurrence Download

description: A dataset containing 276 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anoura cultrata Handley, 1960"
 ]
}

 The dataset includes 276 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000647-150811131857512/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dtrs32
title: Occurrence Download

description: A dataset containing 2660 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pluvianellidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 2660 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061277-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8zua2
title: Occurrence Download

description: A dataset containing 528 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mauremys mutica (Cantor, 1842)"
 ]
}

 The dataset includes 528 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0178906-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uq4jk8
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Palicourea nayana Standl. ex Steyerm."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0178908-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.iwiaug
title: Occurrence Download

description: A dataset containing 1145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cestrum nocturnum L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1145 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000647-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28269451
title: Comparative genomic analysis reveals the emergence and dissemination of different <i>Salmonella enterica</i> serovar Gallinarum biovar Gallinarum lineages in Brazil

description: <i>Salmonella enterica</i> serovar Gallinarum biovar Gallinarum is a pathogenic bacterium that causes fowl typhoid (FT), affecting chicken flocks worldwide. This study aimed to evaluate the emergence, dissemination and genomic profile of <i>S.</i> Gallinarum lineages from Brazil. Twelve whole-genome sequences (WGS) of different <i>S</i>. Gallinarum strains isolated from Brazilian poultry farms (2014–2018) were obtained and used to construct a dataset with 31 other previously published sequences (five more from Brazil). The phylogenetic diversity, temporal evolution and antimicrobial resistance/virulence genomic profile of Brazilian strains were evaluated. Sixteen (94.1%) Brazilian strains were from sequence type ST78 and one (5.9%) was from ST331. All <i>S.</i> Gallinarum strains clustered into five different clades/lineages (I to V), all circulating in South America and four (I, II, III, IV) in Brazil. The time of most recent common ancestor (tMRCA) of all strains was many centuries ago, but the two lineages detected only in South America (II and V) had tMRCA in recent decades. IncFIC(FII), IncFII(S) and ColRNAI were plasmid replicons frequently found in the lineages from Brazil, but antimicrobial resistance genes were scarce. Only two resistance genes (<i>aac(6’)-Iaa</i> and <i>mdf(A)</i>) were detected in most strains, while two other (<i>blaTEM-106</i> and <i>fosA3</i>) were present in some isolates. Important differences were also observed in the virulence genomic profile of the different lineages, highlighting lineage IV, which does not carry the very important <i>Salmonella</i> pathogenicity island 1 (SPI1) gene cluster. In summary, this study reveals the emergence and dissemination of four different lineages of <i>S.</i> Gallinarum in Brazil. Fowl typhoid (FT) is a concerning poultry disease caused by <i>S.</i> Gallinarum.Five <i>S.</i> Gallinarum lineages (I to V) were demonstrated in South American farms.<i>S.</i> Gallinarum lineages have specific antimicrobial resistance / virulence genomic profiles.Main FT outbreaks in Brazil have been caused by the specific lineage II. Fowl typhoid (FT) is a concerning poultry disease caused by <i>S.</i> Gallinarum. Five <i>S.</i> Gallinarum lineages (I to V) were demonstrated in South American farms. <i>S.</i> Gallinarum lineages have specific antimicrobial resistance / virulence genomic profiles. Main FT outbreaks in Brazil have been caused by the specific lineage II.
DOI: 10.6084/m9.figshare.28269451.v2
title: Comparative genomic analysis reveals the emergence and dissemination of different <i>Salmonella enterica</i> serovar Gallinarum biovar Gallinarum lineages in Brazil

description: <i>Salmonella enterica</i> serovar Gallinarum biovar Gallinarum is a pathogenic bacterium that causes fowl typhoid (FT), affecting chicken flocks worldwide. This study aimed to evaluate the emergence, dissemination and genomic profile of <i>S.</i> Gallinarum lineages from Brazil. Twelve whole-genome sequences (WGS) of different <i>S</i>. Gallinarum strains isolated from Brazilian poultry farms (2014–2018) were obtained and used to construct a dataset with 31 other previously published sequences (five more from Brazil). The phylogenetic diversity, temporal evolution and antimicrobial resistance/virulence genomic profile of Brazilian strains were evaluated. Sixteen (94.1%) Brazilian strains were from sequence type ST78 and one (5.9%) was from ST331. All <i>S.</i> Gallinarum strains clustered into five different clades/lineages (I to V), all circulating in South America and four (I, II, III, IV) in Brazil. The time of most recent common ancestor (tMRCA) of all strains was many centuries ago, but the two lineages detected only in South America (II and V) had tMRCA in recent decades. IncFIC(FII), IncFII(S) and ColRNAI were plasmid replicons frequently found in the lineages from Brazil, but antimicrobial resistance genes were scarce. Only two resistance genes (<i>aac(6’)-Iaa</i> and <i>mdf(A)</i>) were detected in most strains, while two other (<i>blaTEM-106</i> and <i>fosA3</i>) were present in some isolates. Important differences were also observed in the virulence genomic profile of the different lineages, highlighting lineage IV, which does not carry the very important <i>Salmonella</i> pathogenicity island 1 (SPI1) gene cluster. In summary, this study reveals the emergence and dissemination of four different lineages of <i>S.</i> Gallinarum in Brazil. Fowl typhoid (FT) is a concerning poultry disease caused by <i>S.</i> Gallinarum.Five <i>S.</i> Gallinarum lineages (I to V) were demonstrated in South American farms.<i>S.</i> Gallinarum lineages have specific antimicrobial resistance / virulence genomic profiles.Main FT outbreaks in Brazil have been caused by the specific lineage II. Fowl typhoid (FT) is a concerning poultry disease caused by <i>S.</i> Gallinarum. Five <i>S.</i> Gallinarum lineages (I to V) were demonstrated in South American farms. <i>S.</i> Gallinarum lineages have specific antimicrobial resistance / virulence genomic profiles. Main FT outbreaks in Brazil have been caused by the specific lineage II.
DOI: 10.6084/m9.figshare.28218693
title: Genetic and structural factors contributing to the dominance and persistence of goose astrovirus type 2

description: Goose astrovirus (GoAstV) has emerged as a significant pathogen affecting the goose industry in China, with GoAstV-2 becoming the dominant genotype since 2017. This study explored the genetic and structural factors underlying the prevalence of GoAstV-2, focusing on codon usage bias, spike protein variability, and structural stability. Phylogenetic and effective population size analyses revealed that GoAstV-2 underwent rapid expansion between 2017 and 2018, followed by population stabilization. Codon usage analysis indicated that GoAstV-2 exhibited a weaker codon usage bias compared to GoAstV-1, suggesting greater flexibility in synonymous codon usage and potentially enhanced adaptability across host environments. Additionally, the lower codon adaptation index values of GoAstV-2 point to a divergence from the host’s optimal codon usage, which may reduce competition with host tRNA pools and facilitate viral replication. The spike protein of GoAstV-2 demonstrated significantly lower variability than GoAstV-1, as shown by Shannon entropy analysis, indicating greater structural stability. This stability may reduce the need for frequent mutations, allowing GoAstV-2 to persist in host populations without undergoing constant evolution. The lower antigenic variability likely decreases immune-driven selective pressure, contributing to the sustained viral transmission and long-term persistence. These findings provide new insights into the evolutionary advantages of GoAstV-2 and its epidemiological success, which could inform future control strategies aimed at mitigating its impact on poultry populations. Goose astrovirus type 2 (GoAstV-2) became the dominant strain in China post-2017.GoAstV-2 exhibits weaker codon usage bias, enhancing adaptability across hosts.The stability of GoAstV-2 spike protein reduces mutation needs and selective pressure.GoAstV-2 low spike protein variability supports long-term persistence in host populations. Goose astrovirus type 2 (GoAstV-2) became the dominant strain in China post-2017. GoAstV-2 exhibits weaker codon usage bias, enhancing adaptability across hosts. The stability of GoAstV-2 spike protein reduces mutation needs and selective pressure. GoAstV-2 low spike protein variability supports long-term persistence in host populations.