cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.upjfey
title: Occurrence Download

description: A dataset containing 3080 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Papilio machaon Schwalbenschwanz",
 "HasCoordinate is false",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3080 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021217-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eg3aeh
title: Occurrence Download

description: A dataset containing 902 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Picea likiangensis var. rubescens Rehd. & E.H.Wilson"
 ]
}

 The dataset includes 902 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023543-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tuh8rs
title: Occurrence Download

description: A dataset containing 13310 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parnassius apollo (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 13310 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021219-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hecj74
title: Occurrence Download

description: A dataset containing 33588 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-126 60.0882, -120 60.0882, -120 61.39572, -126 61.39572, -126 60.0882))"
 ]
}

 The dataset includes 33588 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039957-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lxkv1b
title: Occurrence Download

description: A dataset containing 11188 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thamnophis proximus (Say, 1823)"
 ]
}

 The dataset includes 11188 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006689-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.333xtr
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Tiroler Landesmuseum Ferdinandeum",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Quercus brantii Lindl."
 ]
}

 The dataset's 1 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0415045-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z3v9yx
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thelypodium longifolium (Benth.) S.Watson"
 ]
}

 The dataset includes 25 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041050-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p99r3b
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lachnostoma huilaense Morillo"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0167676-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrwsut
title: Occurrence Download

description: A dataset containing 247 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ainsliaea aptera DC."
 ]
}

 The dataset includes 247 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023531-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ftn6qq
title: Occurrence Download

description: A dataset containing 1652 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pyrgus centaureae (Rambur, 1839)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1652 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021223-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t9z4ma
title: Occurrence Download

description: A dataset containing 3566 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyclamen repandum Sm.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 3566 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014038-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f9mrk5
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Ophryosporus paradoxus (Hook. & Arn.) Benth. & Hook. ex Hook.fil. & Jackson"
 ]
}

 The dataset includes 86 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0275073-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.srwb2d
title: Occurrence Download

description: A dataset containing 3423 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Human Observation"
 ]
 },
 {
 "or" : [
 "TaxonKey is Thrips Linnaeus, 1758",
 "TaxonKey is Scirtothrips Shull, 1909",
 "TaxonKey is Frankliniella Karny, 1910"
 ]
 }
 ]
}

 The dataset includes 3423 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000972-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zj5kwt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trichocentrum purpureum Lindl. ex Rchb.f."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019106-230810091245214/datasets/export for details.
DOI: 10.15468/dl.a8nbsb
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Adenopeltis serrata (W.T.Aiton) I.M.Johnst."
 ]
}

 The dataset includes 120 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0275083-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3zvp9v
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trichocentrum pulchrum Poepp. & Endl."
 ]
}

 The dataset includes 60 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019101-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q7tsqu
title: Occurrence Download

description: A dataset containing 161086 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Seasearch Marine Surveys in Scotland"
 ]
}

 The dataset includes 161086 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012880-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.839ht2
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atractus pamplonensis Amaral, 1937"
 ]
}

 The dataset includes 87 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0279456-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.abupl0
title: Occurrence Download

description: A dataset containing 7703 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Tyrannus verticalis Say, 1823"
 ]
}

 The dataset includes 7703 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008242-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tzs4af
title: Occurrence Download

description: A dataset containing 442 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neogoveidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 442 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019105-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.atw287
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acantharia",
 "HasCoordinate is true",
 "Country is one of (Italy)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 42 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226607-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yoelbk
title: Occurrence Download

description: A dataset containing 19886 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eichhornia crassipes (Mart.) Solms"
 ]
}

 The dataset includes 19886 records from 420 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047673-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11002970
title: eueides_vibilia_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.11002971
title: eueides_vibilia_spades_01.fasta.gz

description: .
DOI: 10.15468/dl.mgh6dm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Microsporea",
 "HasCoordinate is true",
 "Country is one of (Italy)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226600-210914110416597/datasets/export for details.
DOI: 10.15468/dl.3t3x34
title: Occurrence Download

description: A dataset containing 391 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xyris flabelliformis Chapm."
 ]
}

 The dataset includes 391 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035088-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2qzegq
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceratozamia vovidesii Pérez-Farr. & Iglesias"
 ]
}

 The dataset includes 22 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047685-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.85jph5
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pedinophyceae",
 "HasCoordinate is true",
 "Country is one of (Italy)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226601-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b7cj9v
title: Occurrence Download

description: A dataset containing 302678 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Human Observation, Observation, Machine Observation)",
 "Country is Croatia",
 "GadmGid is HRV",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 302678 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120729-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.94lzcy
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eotetranychus sexmaculatus (Riley, 1890)"
 ]
}

 The dataset includes 13 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010221-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p4rt4v
title: Occurrence Download

description: A dataset containing 132211 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scilla L."
 ]
}

 The dataset includes 132211 records from 815 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120748-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qmfztb
title: Occurrence Download

description: A dataset containing 106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Elusimicrobia",
 "HasCoordinate is true",
 "Country is one of (Italy)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 106 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226624-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.naq5au
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Couepia belemii Prance"
 ]
}

 The dataset includes 57 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013513-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrbwj3
title: Occurrence Download

description: A dataset containing 84995 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Campanula rapunculoides L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 84995 records from 543 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120732-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.87sng7
title: Occurrence Download

description: A dataset containing 115382 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carduus nutans"
 ]
}

 The dataset includes 115382 records from 1373 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043124-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4fmgy5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is "
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043184-250827131500795/datasets/export for details.
DOI: 10.15468/dl.7yjrms
title: Occurrence Download

description: A dataset containing 2022 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Undaria pinnatifida",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((40.81373 29.26705, 40.81373 50.94, -6.6 50.94, -6.6 29.26705, 40.81373 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 2022 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043183-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.66fjve
title: Occurrence Download

description: A dataset containing 180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is TUR",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus robur"
 ]
}

 The dataset includes 180 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043187-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4m24kj
title: Occurrence Download

description: A dataset containing 2768 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "Country is Portugal",
 "TaxonKey is Canis lupus"
 ]
}

 The dataset includes 2768 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043186-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.age8jr
title: Occurrence Download

description: A dataset listing the 813 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry MULTIPOLYGON(((-108.84738 27.90506,-108.52432 26.97024,-107.74022 26.19077,-107.20178 25.84298,-107.12437 26.5616,-107.78733 27.30864,-108.82046 27.90506,-108.84738 27.90506)))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Aves, Mammalia, Amphibia, Reptilia, Reptilia, Reptilia, Reptilia)"
 ]
}

 The dataset's 813 records were derived from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043148-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjk4mx
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neotamias obscurus"
 ]
}

 The dataset includes 162 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043189-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e4k6pw
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Verbena rigida",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 38 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043191-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17080653
title: TrypTag: Genome-wide subcellular protein localisation in Trypanosoma brucei.

description: TrypTag genome-wide protein localisation project data. Widefield epifluorescence microscope images of protein subcellular localisation in the unicellular eukaryotic pathogen Trypanosoma brucei by endogenous tagging with mNeonGreen (mNG). This master deposition includes a summary of the localisations, scripts, code and primer sequences used to build the TrypTag database, provided in the master directory structure. It does not include any microscopy data, which are spread over multiple Zenodo DOIs. Instead, this deposition and the raw and processed data directories include an index linking gene IDs to each Zenodo DOI. Data can also be browsed at TrypTag.org.

If you use this data resource please cite Billington et al. 2023 Nature Microbiology (doi:10.1038/s41564-022-01295-6). We recommend including this citation in the results or methods if TrypTag was used as part of a discovery process. If directly using TrypTag images, please also indicate in the figure legend or similar which images are from TrypTag. If carrying out a large-scale data analysis, please also cite this Zenodo deposition.

Data can be mined via the cellular localization imaging or cellular component GO term searches at the genome database TriTrypDB.org (part of VEuPathDB). If you do, please also cite the genome database.

You may also find the following papers informative: Dean et al. 2016 Trends in Parasitology (doi:10.1016/j.pt.2016.10.009), which describes the original project aims and workflow. Halliday et al. 2019 Molecular and Biochemical Parasitology (doi:10.1016/j.molbiopara.2018.12.003), which describes the localisation ontology with example images and comparison to Leishmania.
description: Add original gene inclusion criteria table as a tsv file, including whether a gene was identified as suitable for n or terminal tagging (based on presence of a signal peptide), whether the gene was an initial priority gene (due to mass spectrometry evidence for expression) and genes with similar or identical sequences in the homology arms as identified by the 'tagit' script for generating primers.

Add raw localisation data table as a tsv file, a concatenated list of the individual annotation tables for the individual plates. This is potentially messy data, subject to manual validation to make the primary data table, and the combined localisations.tsv is a better resource in almost all instances. However, it allows relatively easy access to localisation annotations for genes which have been tagged multiple times, where only the most recent replicate is in the processed data table.
DOI: 10.13011/m3-b8fq-4y25
title: FOXDEN dataset /beamline=3a/btr=test-123-a/cycle=2025-2/sample_name=test-8/user=ad785:20250908_145723