cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23596523.v1
title: “Reef Survivor”: A new board game designed to teach college and university undergraduate students about reef ecology, evolution, and extinction

description: Educational geoscience games have been increasing in popularity because they promote learning through amusement and encourage students to engage with topical material and each other. Here we describe a new board game, “Reef Survivor”, and its use as an instructional tool in undergraduate classes. The educational objective is to teach players about ecology, evolution, and environmental perturbations, while the gameplay objective is to build a resilient reef ecosystem. Through collaborative and competitive gameplay, students learn about evolution mechanics—mutation, migration, and natural selection—as well as ecology and how reefs survive natural disasters. The game blends informed decision making and chance to encourage students to learn and model complex Earth systems and evolutionary processes. Students choose their environment and reef community, whereas chance influences mutations and disasters. The game was incorporated in undergraduate classroom activities in 2021 and 2022 at 20 colleges and universities, mostly public institutions in the United States. Students were enthusiastic about the game, with two thirds saying they would rather play the game than have a normal lab. Notably, students said playing with a peer helped them learn better. Taken together, learning gains from 15 institutions were pos­itive, with significant gains by the final semester of assess­ment. Overall, learning gains were not positive during the first deployment (online) but improved substantially when refined and played in person. A print-and-play version of the game (doi: 10.18738/T8/S3KWT7), onboarding and follow-up assignments, and suggested extension activities are provided; modifications for time, course objective, and edu­cational level are also discussed.
DOI: 10.6084/m9.figshare.27002785.v2
title: The SNP datasets of <i>Liquidambar formosana</i> and <i>L. acalycina</i>

description: The SNP datasets of <i>Liquidambar formosana</i> and <i>L. acalycina</i> based on RAD sequencing.
DOI: 10.6084/m9.figshare.27718746.v1
title: 674 validated floods

description: flood event dataset detected and invalidated from Weibo texts.
DOI: 10.17632/x3mrhtxnby
title: Electrical resistivity survey datasets

description: This data consists of geological map, layout plan and geophysical survey lines in several location in Banggi Island, Sabah Malaysia. There are six inverse model resistivity data also provided here.
DOI: 10.6084/m9.figshare.5129800.v1
title: Supplementary Material for: Estimated GFR and Mortality in Older Men: Are All eGFR Formulae Equal?

description: <b><i>Background:</i></b> Recently, the first estimated glomerular filtration rate (eGFR) formula specifically developed for community-dwelling older adults, the Berlin Initiative Study Equation 2 (BIS2), was reported. To date, however, no study has examined the performance of the BIS2 to predict death in older adults as compared to equations used clinically and in research. <b><i>Methods:</i></b> We prospectively followed 2,994 community-dwelling men (age 76.4 ± 5.6) enrolled in the MrOS Sleep Study. We calculated baseline eGFR from serum creatinine and cystatin-C using the BIS2, Chronic Kidney Disease Epidemiology (CKD-EPI<sub>cr,cysc</sub>), CKD-EPI<sub>cysc</sub> and CKD-EPI<sub>cr</sub> equations. Analyses included Cox-proportional hazards regression and net reclassification improvement (NRI) for the outcomes of all-cause and cardiovascular death. <b><i>Results:</i></b> Follow-up time was 7.3 ± 1.9 years. By BIS2, 42 and 11% had eGFR &lt;60 and &lt;45, respectively, compared to CKD-EPI<sub>cr</sub> (23 and 6%), CKD-EPI<sub>cysc</sub> (36 and 13%) and CKD-EPI<sub>cr,cysc</sub> (28 and 8%). BIS2 eGFR &lt;45 was associated with twofold higher rate of all-cause mortality when compared to eGFR ≥75 after multivariate adjustment (HR 2.1, 95% CI 1.5-2.8). Results were similar for CKD-EPI<sub>cr,cysc</sub> &lt;45 (HR 2.1, 95% CI 1.6-2.7) and CKD-EPI<sub>cysc</sub> &lt;45 (HR 2.1, 95% CI 1.7-2.7) and weaker for CKD-EPI<sub>cr</sub> &lt;45 (HR 1.5, 95% CI 1.2-2.0). In NRI analyses, when compared to CKD-EPI<sub>cr,cysc</sub>, both BIS2 and CKD-EPI<sub>cr</sub> equations more often misclassified participants with respect to mortality. We found similar results for cardiovascular death. <b><i>Conclusion:</i></b> The BIS2 did not outperform and the CKD-EPI<sub>cr</sub> was inferior to the cystatin C-based CKD-EPI equations to predict death in this cohort of older men. Thus, the cystatin C-based CKD-EPI equations are the formulae of choice to predict death in community-dwelling older men.
DOI: 10.6084/m9.figshare.7283498.v1
title: The effects of organic amendments and plastic mulch on soil bacterial and fungal communities over time in tomato cropping systems

description: Bacterial and fungal amplicons from 16S and ITS (Internal Transcribed Spacer) rRNA (ribosomal RNA) genes using Illumina sequencing technique. Bacterial and fungal libraries included each one a compressed fastq.gz files (R1 and R2) containing sequence and quality data. <br>
DOI: 10.6084/m9.figshare.23524278.v1
title: raw data.xlsx

description: The original data includes the basic information of the subjects and the follow-up data of Action Research Arm Test，Fugl–Meyer score for the upper extremity, Motor Function Assessment Scale, modified Barthel indexand before and after the experiment.
DOI: 10.6084/m9.figshare.24911454.v4
title: <b>Amazon deforestation's impact on precipitation reverses between seasons</b>

description: <b>Shared codes and data for “</b><b>Amazon deforestation's impact on precipitation reverses between seasons</b><b>”</b>
DOI: 10.6084/m9.figshare.25213607.v1
title: Phyloseq object

description: The uploaded Phyloseq object includes a taxonomy table and metadata, which are essential components for microbiome data analysis:<b>Taxonomy Table (</b><code><strong>tax_table</strong></code><b>)</b>: This matrix contains the taxonomic classification of each observed feature (e.g., OTUs) across various taxonomic ranks such as kingdom, phylum, class, order, family, genus, and species.<b>Sample Data (</b><code><strong>sample_data</strong></code><b>)</b>: This data frame holds metadata for each sample in the study, which may include information like environmental conditions, patient demographics, or experimental treatments.
DOI: 10.6084/m9.figshare.3557733.v1
title: Appendix F. Color versions of manuscript Figs. 2–4.

description: Color versions of manuscript Figs. 2–4.
DOI: 10.6084/m9.figshare.6284294.v1
title: Supplementary Material for: Parathyroid Hormone, Fibroblast Growth Factor 23, and Parameters of Phosphate Reabsorption

description: <b><i>Background:</i></b> The serum phosphorus concentration ([P]<sub>s</sub>) is the sum of E<sub>P</sub>/C<sub>cr</sub> and TR<sub>P</sub>/C<sub>cr</sub>, where C<sub>cr</sub> is creatinine clearance and E<sub>P</sub> and TR<sub>P</sub> are rates of excretion and reabsorption of phosphate. In chronic kidney disease (CKD), parathyroid hormone (PTH) and fibroblast growth factor 23 (FGF23) mediate reduction of TR<sub>P</sub>/C<sub>cr</sub>, and [PTH] and [FGF23] are linear functions of E<sub>P</sub>/C<sub>cr</sub>. If controls and patients with CKD are considered together, TR<sub>P</sub>/C<sub>cr</sub> is a hyperbolic function of E<sub>P</sub>/C<sub>cr</sub>. Given these observations, we hypothesized that hyperbolas would describe relationships of phosphate reabsorption to [PTH] and [FGF23]. <b><i>Methods:</i></b> We studied 30 patients and 28 controls with mean eGFR of 29.5 and 86.0 mL/min/1.73 m<sup>2</sup>, respectively. All analyses combined both subsets. We measured fasting [PTH] 1–84 and intact [FGF23], and determined contemporaneous E<sub>P</sub>/C<sub>cr</sub>, TR<sub>P</sub>/C<sub>cr</sub>, fractional excretion of phosphorus (FE<sub>P</sub>), and phosphate tubular maximum per volume of filtrate (Tm<sub>P</sub>/GFR). We examined linear regressions of TR<sub>P</sub>/C<sub>cr</sub> and Tm<sub>P</sub>/GFR on 100/[PTH] and 100/[FGF23]; from linear equations we derived hyperbolic equations relating reabsorptive parameters to hormone concentrations. <b><i>Results:</i></b> TR<sub>P</sub>/C<sub>cr</sub> and Tm<sub>P</sub>/GFR were linear functions of 100/[PTH] and 100/[FGF23] and hyperbolic functions of [PTH] and [FGF23]. TR<sub>P</sub>/C<sub>cr</sub> and Tm<sub>P</sub>/GFR fell minimally over the ranges of E<sub>P</sub>/C<sub>cr</sub>, [PTH], and [FGF23] seen in CKD. FE<sub>P</sub> rose with E<sub>P</sub>/C<sub>cr</sub> despite stable phosphate reabsorption. <b><i>Conclusions:</i></b> Hyperbolas describe relationships of TR<sub>P</sub>/C<sub>cr</sub> and Tm<sub>P</sub>/GFR to [PTH] and [FGF23] if subjects with normal and reduced GFR are analyzed together. Although FE<sub>P</sub> rises with [PTH] and [FGF23] as GFR falls, the simultaneous increments do not signify hormonally mediated reductions in phosphate reabsorption.
DOI: 10.17632/8m2gg9yxkk
title: The Effects of Synthetic Fertilizer and Whey Protein Concentrate Application on Pepper Plant’s (Capsicum annuum L.) Yield and Growth

description: This study emerged with the idea of what could be done as an alternative to chemicals that cause environmental pollution. The experiment was established to find an answer to the question of what would happen if the proteins produced for the healthy muscle development of the human body were used in plant production. In addition to the control group in which there was no plant nutrition element, commercial fertilizers were also used as the most important witness.
DOI: 10.6084/m9.figshare.22691557.v1
title: 3D bridge models

description: DT represents a fusion of the informational and physical domains to bridge the real and virtual worlds, which offers a new perspective for intelligent bridge construction. In this context, we proposed a DT-enabled spatial modelling approach of bridge construction environments to upgrade decision-making intelligence. We first classified the objects and relationships involved in the bridge construction. Based on that, we established a logic model, which provided a reference guide for implementing the subsequent spatial modelling and visual simulation of bridge construction. Then, we created a high-fidelity virtual geographic scene for bridge construction and proposed the corresponding spatial modelling solutions for wind, temperature, and stress factors. In addition, the bridge construction process was visually simulated by analogy with the tree growth. Finally, the proposed approach was implemented on a mega suspension bridge under construction. The results from the case study show that the spatial modelling and visual simulation of bridge construction provide an effective solution for pre-discovering risks, optimizing construction plans, and assisting decision-making, which also has excellent potential for the lifecycle management of bridge construction
DOI: 10.6084/m9.figshare.24866175.v1
title: Hacettepe University, Department of Geomatics Engineering LiDAR Scan

description: The handheld LiDAR scan of the Geomatics Engineering Department of Hacettepe University, Turkey. If you are relying on this dataset, please refer to this GitHub repo.
DOI: 10.6084/m9.figshare.29029154.v1
title: T7 RNA seq data

description: RNA seq data of T7 select and T7 mutant phage infect YFP or Kiwa. RNA was extracted 15 minutes post infection.
DOI: 10.6084/m9.figshare.c.3607829_d2.v1
title: Additional file 1 of Principal components analysis - K-means transposon element based foxtail millet core collection selection method

description: Online Resource 1. Tables with Genotype/Phenotype information (OR1.rar). ∙FoxtailATMap.cvs : Mapped Foxtail AT where 1 = ’ presence’; 0 = ’abscence’. (corresponds to data II). ∙FoxtailGenMap.cvs : Mapped Foxtail Genotype where 1 = ’presence’; 0 = ’abscence’.(corresponds to data I). (RAR 18.2 kb)
DOI: 10.17632/kdd29rfmv8
title: Obsessive-Compulsive Symptoms in Medical Students

description: The database used for the cross-sectional study called "Knowledge about COVID-19 and obsessive-compulsive symptoms in Peruvian medical students: An online-based cross-sectional study".
DOI: 10.17632/w5t358925f
title: Data for: “Global warming” vs. “Climate change”: A replication on the relationship between political ideology, question wording, and environmental belief
DOI: 10.6084/m9.figshare.13033028.v1
title: PEERJ-AI-MEWS

description: he study population consisted of consecutive adult (aged &gt;17 years) non-traumatic patients admitted to the 5 Taiwan EDs during a 9-year period (January 1, 2008 to December 31, 2016). Exclusion criteria included patients with the following conditions: 1) out-of-hospital cardiac arrest and dead upon arrival; 2) inability to receive follow-up examinations, owing to discharge against medical advice or transfer to another hospital from the ED; and 3) missing variables in the electronic database.
DOI: 10.6084/m9.figshare.17088902.v1
title: Production History Rate.csv

description: This data consist of Production History Data, such as Water Production, Oil Production, Gas Production.
DOI: 10.6084/m9.figshare.28721477.v1
title: Whole-brain light-field imaging data

description: Supporting data for: Wang Z, Mai W, Chai Y, et al. The geometry and dimensionality of brain-wide activity[J]. eLife, 2025, 14.<br>Whole-brain light-field imaging data collected by Yuming Chai and Kexin QiCode by Zezhen Wang and Weihao Mai (https://github.com/wzz1999/ERM-scale)Contact: mahy@ust.hk; qwen@ustc.edu.cnUse of the data should be accompanied with a reference to the paper (Wang Z, Mai W, Chai Y, et al. eLife, 2025. https://doi.org/10.7554/eLife.100666.2)
DOI: 10.6084/m9.figshare.28830299.v1
title: Metrics from IoT simulations

description: This dataset contains performance metrics generated from a simulated benchmark comparing monolithic Service-Oriented Architecture (SOA) and a SOA-governed microservices architecture in an IoT-driven smart city context. The benchmark tests were performed using Apache JMeter and deployed in a Kubernetes-based local cloud environment.Four concurrency levels (200, 300, 500, and 700 virtual users) were used to evaluate throughput, latency, success rate, and error rate for both the monolithic and microservices setups. The dataset includes raw results, processed summaries, and visualizations that support the empirical findings reported in the paper:<i>Architecting the Future: Harmonizing SOA and Microservices in IoT-Driven Smart Cities</i>, IJACSA, Vol. XVI, No. V, 2025.
DOI: 10.6084/m9.figshare.29145782.v1
title: Maxwell's Law of Distribution of Molecular Velocities

description: This presentation explores Maxwell's Law of Distribution of Molecular Velocities, a fundamental principle in statistical mechanics and kinetic theory of gases. It provides a detailed overview of how molecular speeds in a gas vary at a given temperature, illustrating the probabilistic nature of molecular motion. The slides cover the mathematical formulation of the Maxwell-Boltzmann distribution, graphical interpretations, key velocity parameters (most probable, average, and root-mean-square speeds), and the effects of temperature and molecular mass. This resource is ideal for students and educators in physical chemistry and physics seeking a clear understanding of gas behavior at the molecular level.
DOI: 10.6084/m9.figshare.5110735.v3
title: Fraxinus ornus chorology

description: Distribution map of manna ash (<i>Fraxinus ornus</i>)<br><br>These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geo-databases, scientific and grey literature.<br>The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix "plg"), which define continuous areas of occupancy of the species, and with point features (name suffix "pnt"), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix "syn"). <br>Polygon borders delimiting species ranges are generalized across the mainland and sea boundaries. This offers the possibility to mask sea areas or to clip and extract the terrestrial range parts using GIS data layers of the users' choice. An additional version of polygon ranges are clipped with a coastline (name suffix "clip"), which have been derived from Natural Earth dataset "Admin 0 - Countries" 1:50M version 4.1.0 (https://www.naturalearthdata.com). <br><br>Please cite as:<br>Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007 <br><br>Additional information and used references are on 'supplementary materials' document:<br>https://doi.org/10.6084/m9.figshare.5091901<br><br>Chorological maps are part of the "European Atlas of Forest Tree Species" project:<br>https://w3id.org/mtv/FISE-Comm/v01
DOI: 10.6084/m9.figshare.5135314.v1
title: Supplementary Material for: Prenatal Diagnosis of Dextrocardia with Complex Congenital Heart Disease Using Fetal Intelligent Navigation Echocardiography (FINE) and a Literature Review

description: Fetal dextrocardia is a type of cardiac malposition where the major axis from base to apex points to the right side. This condition is usually associated with a wide spectrum of complex cardiac defects. As a result, dextrocardia is conceptually difficult to understand and diagnose on prenatal ultrasound. The advantage of four-dimensional sonography with spatiotemporal image correlation (STIC) is that this modality can facilitate fetal cardiac examination. A novel method known as fetal intelligent navigation echocardiography (FINE) allows automatic generation of nine standard fetal echocardiography views in normal hearts by applying intelligent navigation technology to STIC volume datasets. In fetuses with congenital heart disease, FINE is also able to demonstrate abnormal cardiac anatomy and relationships when there is normal cardiac axis and position. However, this technology has never been applied to cases of cardiac malposition. We report herein for the first time, a case of fetal dextrocardia and situs solitus with complex congenital heart disease in which the FINE method was invaluable in diagnosing multiple abnormalities and defining complex anatomic relationships. We also review the literature on prenatal sonographic diagnosis of dextrocardia (with an emphasis on situs solitus), as well as tricuspid atresia with its associated cardiac features.
DOI: 10.4121/uuid:6be435d9-c2b4-42e4-a5e2-e683f939b2cb
title: Real-world VRP benchmark data with realistic constraints - input data and results - v2

description: This dataset contains 9 Excel (xls) files that can be used as a new benchmark data for the solving of real-world vehicle routing problems with realistic non-standard constraints. All data are real and obtained experimentally by using VRP algorithm on production environment in one of the biggest distribution company in Bosnia and Herzegovina. This dataset also contains 1 additional .csv file which includes real GPS data from vehicle for one day in VRP routing.
DOI: 10.6084/m9.figshare.11752752.v1
title: Comparative model of novel coronavirus 2019-nCoV protease Mpro

description: Comparative model summary: This is protease Mpro encoded in the RNA of the novel coronavirus 2019-nCoV. This virus first reported in 2019 and now spreading from Wuhan, China, the primary location outbreak. The protein sequence was determined based on the data from the Wuhan seafood market pneumonia virus genome (NCBI genome ID MN908947, GenBank: MN908947.3) published by Wu Et al. (LOCUS MN90894, 23-JAN-2020) by multiple sequences alignments with known SARS proteases. Aligning the sequence region of 2019-nCoV, “orf1ab polyprotein“ with the sequence of PDB 5N5O, the SARS main protease deposited by Zhang and Hilgenfeld in 2017 yield a protease with 306 amino acids. The sequence identity compared to 2H2Z, another SARS crystal structure, published by the Rao lab in 2006 is 96.1 %, similarity is 98.7 % with 100% aligned residues. The model is expected to be of high accuracy. Until a crystal structure is available, scientist worldwide use this model to perform docking, MD, cavity analysis and AI based methods to develop vaccines against 2019-nCoV. Currently we work with Chinese Pharma and provide our data to China CDC and got very positive feedback about our contribution.
DOI: 10.6084/m9.figshare.14593629.v3
title: Data for article "Phylogeny, biogeography, and diversification of the mining bee family Andrenidae'

description: This readme.txt file was generated on 2021-SEPT-3 by Silas Bossert<br>GENERAL INFORMATION<br>This readme files describes the supplementary files associated with the research article<br>Phylogeny, biogeography, and diversification of the mining bee family Andrenidae<br>by Silas Bossert, Thomas J. Wood, Sébastien Patiny, Denis Michez, Eduardo A.B. Almeida, Robert L. Minckley, Laurence Packer, John L. Neff, Robert S. Copeland, Jakub Straka, Alain Pauly, Terry Griswold, Seán G. Brady, Bryan N. Danforth, Elizabeth A. Murray<br>For questions and/or concerns please contact the lead author of the paper under silas.bossert [at] wsu.edu<br>This repository consists of 6 files.<br>###1. Supporting_Information.pdf###<br>This Pdf file is a detailed compilation of methods and results, and is instrumental for understanding the deposited files.<br>###2. Assembly_Files.tar.gz###<br>This compressed archive contains all UCE assembly files used in this study. This includes all assembly files generated in the course of this study, as well those from previously published research as described in the Supplementary Material Pdf.<br>###2. Concatenated_Alignment.tar.gz###<br>This archive contains the concatenated DNA sequence matrix used for phylogenetic estimates.<br>###3. Gene_Trees.tar.gz###<br>This archive contains 1,388 UCE gene trees estimates with IQ-Tree 2.<br>###4. Input_Files_Information.tar.gz###<br>This file contains various input and configuration files used in the above mentioned study. Specifically, it contains the input for the following analyses: (1) Method-of-Moments estimates, (2) BioGeoBEARS analyses, (3) BAMM analyses, (4) MrBayes runs, (5) RevBayes runs, (6) Spruceup run. Lastly, it contains the file specifying the numbers used to code species diversity of Andrenidae.<br>###5. Species_Tree_Files.tar.gz###<br>This file contains all species trees generated in the study in Newick format.<br>###6. High_Quality_Figures.zip###<br>This archive contains the main figures of the article in high resolution.<br><br>
DOI: 10.6084/m9.figshare.26543542.v2
title: Bases de datos OLTP y OLAP sobre ventas en una cadena de tiendas

description: Conjunto de datos <b>generado </b>sobre ventas durante un período en una cadena de tiendas. Los precios de los productos presentan variabilidad temporal y dependen de cada establecimiento.La base de datos OLTP almacena las líneas de detalle de los tickets emitidos, junto con una tabla de productos proveniente del sistema de gestión de almacén.En la base de datos OLAP, los hechos están estructurados en dos niveles de granularidad: resumen diario y línea de ticket.Los datos se proporcionan en formato de respaldo de PostgreSQL (al restaurarlo, se genera un error indicando que el esquema "public" ya existe, pero la restauración se completa correctamente) y en formato CSV (comprimido en un archivo ZIP). La base de datos OLAP también se ofrece en formato PBIX para su uso en Power BI.
DOI: 10.6084/m9.figshare.28935830.v1
title: Data of Green Noodles and Infants Bowel Movement

description: These data describe changes in bowel movement frequency in infants aged 0-12 months before and after their mothers consumed green noodles based on long bean leaves / Lembayung leaves (Vigna sinensis L.) for 14 days.