cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/pr4m594vmf
title: SHADE 2021: Meso-scale 2m air temperature around New York City and Pittsburgh

description: The dataset contains ambient air temperature at 2m above the ground (2m air temperature) for mesoscale domains around New York City (NYC) and Pittsburgh (PGH), which is used in Choi. et al. (2021). Weather Research and Forecasting Model (WRF), coupled with Princeton Urban Canopy Model (PUCM), reanalyzes historical 6-hourly 12km × 12km data of North American Meso-scale Forecast System 12km Analysis (NAM-ANL) to 1km × 1km gird data. The dataset covers domains around NYC (160km × 160km) and PGH (200km × 200km) for three months of summer (June/July/August) from 2016 and 2018. The dataset also contains testset from August 01 to August 03, 2019.

In each {year}JJA{location}.mat file:
lon (degree): Longitude of grid points,
lat (degree): Latitude of grid points,
t2data.datetime (yyyy-MM-dd_HH:mm:ss): datetime of temperature field,
t2data.t2 (celcius): 2m air temperature

The data is used to analyze historical near-surface temperature around the cities in the article, entitled "Short-term probabilistic forecastsing of meso-scale near-surface urban temperature fields" (DOI: 10.1016/j.envsoft.2021.105189).
DOI: 10.6084/m9.figshare.17879585.v6
title: phishing_rf_model

description: The phishing url dataset contains synthetic data of urls - some regular and some used for phishing. This is a scikit-learn pipeline wrapping a random forest model trained on the training dataset.<br>The dataset is based on the project (https://github.com/Rohith-2/url_classification_dl) byRohith Ramakrishnan (https://www.linkedin.com/in/rohith-ramakrishnan-54094a1a0/) and others, accompanied bya blog post (https://medium.com/nerd-for-tech/url-feature-engineering-and-classification-66c0512fb34d&gt;).<br>The dataset is released under Creative Commons Zero v1.0 Universal (CC0 1.0).
DOI: 10.6084/m9.figshare.2067684.v4
title: POPORO image-set

description: Pairs of every-day objects with norms of semantic relatedness, previouls published asL:<br><br>Kovalenko, L.Y., Chaumon, M. & Busch, N.A., 2012. A Pool of Pairs of Related Objects (POPORO) for Investigating Visual Semantic Integration: Behavioral and Electrophysiological Validation. Brain topography.<br><br>This fileset contains the POPORO images along with the summary of relatedness ratings and image feature.
DOI: 10.6084/m9.figshare.28886750.v1
title: Supplementary material for Klementz et al. (2025) Exploring genome architecture as a source of phylogenetic characters for resolving the apulmonate arachnid polytomy. Molecular Phylogenetics and Evolution.

description: Chromosome-level genome assemblies are powerful tools for identifying the presence of rare genomic changes that can overcome phylogenetically intractable problems. Chelicerata, the sister group to the remaining arthropods, harbors a soft polytomy at the base of an internal node named Euchelicerata, which is variably resolved across phylogenomic studies. As a result, seven orders, comprising horseshoe crabs and six apulmonate arachnid lineages, exhibit highly unstable placements from one study to the next, typically with maximal nodal support. Here, we analyzed recently released chromosome-level genomes of two of these orders, Opiliones (harvestmen) and Solifugae (camel spiders). We show that both Opiliones and Solifugae exhibit an unduplicated genome condition, as inferred from analysis of gene clusters, microRNAs, and macrosynteny. These results are congruent with phylogenomic studies that have refuted traditional morphological placements of Opiliones and Solifugae as close relatives of orders within Arachnopulmonata, a subset of six arachnid orders that are united by a shared whole genome duplication. Additionally, we examine irreversible chromosome fusion-with-mixing events as potential sources of phylogenetic data. We show that while fusion and mixing events are common in apulmonate arachnids, multiple mixing events support incompatible unrooted tree topologies. These results suggest that fusion and mixing events have evolved convergently in the chelicerate tree of life, particularly for extant lineages with a small number of chromosomes. Overall, our findings demonstrate that broader sampling of chelicerate genomes and establishment of genomic resources for key missing orders are essential to unlocking the potential of rare genomic changes as phylogenetic data sources.
DOI: 10.17632/dx4drbsyfw
title: ECMODE-D-24-00730R1

description: replication folder for "Cross-border M&As, international knowledge flow and global value chain upgrading: Evidence from belt & road countries"
DOI: 10.6084/m9.figshare.21867933.v4
title: Data Sheet Energy.xlsx

description: These data were collected in Greece through an anonymous survey. They contain information about the electricity consumption of households, their property type and size and, the number of occupants, their age, their educational and financial status. Moreover, the dataset contains information about some energy-related behaviors of the occupants along with some extracted indices. An article that provides more specific information is under review in a scientific journal.
DOI: 10.6084/m9.figshare.21944408.v1
title: [Dataset] Performance Metrics for Nanofiltration-based Selective Separation for Resource Extraction and Recovery

description: Data for Li/Mg separation performance from experiments (literature and this study) and module scale modeling (this study). <br> Manuscript: https://assets.researchsquare.com/files/rs-1972307/v1/d8160c3d-e242-42a4-8752-03491081620e.pdf?c=1664999849 <br>
DOI: 10.6084/m9.figshare.24775476.v4
title: Floating Peat Supplementary Data

description: Supplementary data for Deverel et al., "Investigation of floating peat wetlands, Sacramento-San Joaquin Delta, CA".
DOI: 10.6084/m9.figshare.25664574.v3
title: Active layer thickness (2002-2020)

description: Active layer data
DOI: 10.6084/m9.figshare.28792370.v1
title: A Complete Density Correction using Normalizing Flows (CDC-NF) for CMIP6 GCMs (revised)

description: The dataset contains bias-corrected daily precipitation and maximum temperature data generated using the Complete Density Correction method based on Normalizing Flows (CDC-NF) for five selected CMIP6 GCMs: MRI-ESM2-0, MPI-ESM1-2-HR, ACCESS-CM2, GFDL-ESM4, and NorESM2-LM. The data are structured and provided in netCDF format with clearly organized filenames indicating the specific GCM, scenario, and climate variable.
DOI: 10.6084/m9.figshare.7471919.v1
title: Datasets in the simulation study

description: Datasets analyzed in the simulation study with the true values of parameters that generated the data.
DOI: 10.6084/m9.figshare.26093506.v1
title: Ferraz et al. (2024) Metaphotina spp. Measurements and ratios.xlsx

description: Measurements and ratios of specimens analyzed during the taxonomic revision of the genus <i>Metaphotina</i> Piza, 1964.
DOI: 10.17632/xc3xn6zthr
title: Toxicity indices of mercury from consumption of fish and yams from Namukombe stream by children

description: Toxicity indices of mercury from consumption of fish and yams from Namukombe stream by children
DOI: 10.6084/m9.figshare.21669635.v1
title: Intracellular 5-HT2A Paper - Final Data

description: Data set for Intracellular 5-HT2A Paper Vargas et al. - Olson Lab
DOI: 10.6084/m9.figshare.28466183.v3
title: Supporting Data

description: Supporting Data for the following paper:Individualized non-invasive deep brain stimulation of the basal ganglia using transcranial ultrasound stimulation<i>. </i>
DOI: 10.6084/m9.figshare.28840769.v2
title: Metagenome-Assembled Genomes from agricultural soils under Managed Aquifer Recharge

description: This dataset contains 160 Metagenome-Assembled Genomes (MAGs) reconstructed from agricultural soils under Managed Aquifer Recharge (MAR) in a vineyard in California, USA. MAGs were assembled from shotgun metagenomic sequences obtained from soil samples collected at different depths, before and after a MAR event. The dataset includes genome files (.fasta) and a table (Quality Metrics) summarizing genome statistics, including completeness, contamination, genome size, N50, L50, GC content, sequencing coverage, and the estimated number of rRNA and tRNA genes. Additionally, corresponding BioSample and GenBank accession numbers are provided for cross-referencing with public repositories.
DOI: 10.6084/m9.figshare.3531929.v1
title: Appendix E. Summary of insect dispersal studies derived from the literature.

description: Summary of insect dispersal studies derived from the literature.
DOI: 10.6084/m9.figshare.26779603.v1
title: ion intensity (merged)

description: Intra- and extra- cellular non-targeted metabolomes of primary human monocyte-derived macrophages. Table contains a list of ions, m/z ratio, putative annotation based on m/z ratio, module membership and log intensities.Experimental protocol: PBMCs were isolated from leukoreduction system chambers and buffy coats obtained with written informed consent from healthy anonymous blood donors in the UK and The Netherlands, respectively. CD14<sup>+</sup> monocytes were isolated using CD14 magnetic beads and MACS columns (Miltenyi). The subsequent monocytes were then differentiated into macrophages over 6 days using 50 ng/mL human M-CSF (Miltenyi) and cultured in Iscove's Modified Dulbecco's Medium (IMDM) supplemented with 10% heat-inactivated fetal bovine serum, 1% Penicillin/Streptomycin solution, and 1% L-glutamine solution (Gibco). On day 6, the medium was replaced with culture medium without M-CSF and supplemented with the following stimuli: no stimulus, 10 ng/mL LPS (Sigma, E. coli E55:O5), 10 ng/mL LPS plus 50 ng/mL IFN-γ (R&D), 50ng/mL IFN-γ (R&D), 50 ng/mL IL-4 (PeproTech), 50 ng/mL IL-10 (R&D), 100 nM dexamethasone (Sigma) for 24 hours.<br>Annotation:M0: unstimulated macrophages (24hr medium) M-LPS: 24hr LPS, M-LPSIFNγ: 24hr LPS and IFN-γ, M-IFNγ: 24hr IFN-γ, M-IL4: 24hr IL-4,M-IL10: 24hr IL-10, M-dex: 24hr dexamethasonenumbers at the end of the sample ID represent donor numbers.associated preprint: https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4647290
DOI: 10.6084/m9.figshare.28138022.v1
title: Additional files

description: Additional files link to the paper entitled "An expanded phylogenomic analysis of Heterolobosea reveals the deep relationships, non-canonical genetic codes, and cryptic flagellate stages in the group".
DOI: 10.6084/m9.figshare.29064356.v1
title: Water Storage Capacity Index and InSAR Observation of a Boreal Peatland, Trollberget in Sweden

description: In this study, we examined the effect of rewetting on peatland water storage capacity using three complementary methods, including a mesocosm experiment, a large-scale field experiment, and remote sensing. Thirty-six peat cores were extracted from a nutrient-poor boreal fen, Trollberget Experimental Area (TEA) (64°10′N, 19°51′E) in northern Sweden (Laudon et al., 2023). A mesocosm experiment was carried out in climate-controlled chambers for six months to examine the impacts of climate change and rewetting on peatland water storage capacity. The results from the mesocosm experiment were validated using the field data from Trollberget (Karimi et al., 2024). The same methodology applied in the mesocosm experiment was employed for the data from Trollberget for pre- and post-rewetting to estimate water storage capacity. InSAR-based European Ground Motion Service (EGMS) Ortho was used to monitor surface motion (uplift and subsidence) as a proxy for changes in the water storage capacity of peatlands (Khodaei et al., 2023).<br><b>Reference:</b>Karimi, S., Hasselquist, E. M., Salimi, S., Järveoja, J., & Laudon, H. (2024). Rewetting impact on the hydrological function of a drained peatland in the boreal landscape. Journal of Hydrology, 641, 131729.Khodaei, B., Hashemi, H., Salimi, S., & Berndtsson, R. (2023). Substantial carbon sequestration by peatlands in temperate areas revealed by InSAR. Environmental Research Letters, 18(4), 044012. DOI 10.1088/1748-9326/acc194Laudon, H., Mosquera, V., Eklöf, K., Järveoja, J., Karimi, S., Krasnova, A., Peichl, M., Pinkwart, A., Tong, C.H.M., Wallin, M.B. and Zannella, A., 2023. Consequences of rewetting and ditch cleaning on hydrology, water quality, and greenhouse gas balance in a drained northern landscape. Scientific Reports, 13(1), p.20218. https://doi.org/10.1038/s41598-023-47528-4.
DOI: 10.6084/m9.figshare.24481363.v1
title: Survey results, data for "Revisiting the Global Methane Cycle Through Expert Opinion"

description: We developed the written survey questions using the Qualtrics Survey Tool with an enterprise license held by Yale University. We interactively revised background information, response formats, and survey questions based on our discussion with leading scientists in uncertainty quantification and expert opinion analyses. Survey respondents did not include experts involved in survey development or testing. From July to August 2021, the survey questions were further refined for readability, clarity, and scientific rigor following a pilot interview with several early-career scientists.All authors involved in the development of the survey completed human subjects’ protection training offered at Yale University. The survey was approved by the Yale University Institutional Review Board (Yale IRB) and included a risk statement as follows: “You will not directly benefit from participation in this research study, but we hope that the input we receive from all our experts will advance public policy in this area. Your responses will not be linked to your name. Your participation in this study is completely voluntary and the limited amount of personal information collected will be dissociated with your answers prior to data analysis. We are required to inform you that the only risk the Yale IRB review has identified is a possible loss of confidentiality of your answers.”The survey was finally distributed to experts through emails on 19 August 2021 with an accessible link and closed on 31 December 2021. To better help survey participants access all information and questions while filling out the survey, we also distributed a pdf document containing the questionnaires (Supplementary information). The final survey consists of three sections: Introduction, Pre-survey, and the Main Questionnaire containing 16 questions related to uncertainties in the global methane budget. The questionnaire includes a mix of quantitative survey questions to answer initial research and qualitative survey questions that are open-ended and designed to uncover thoughts and opinions.This Excel data sheet includes anonymous survey data
DOI: 10.6084/m9.figshare.28040900.v1
title: data_EHC_QMC.zip

description: Numerical data from our EHC-QMC and ED simulations for studying quantum many-body scars in 1D and many-body localization in 2D.<br><br>In the published version, some figure numbers are changed as follows.<br>Fig numbers - fig1, fig2, fig3 and fig4 remains same.Fig_S4 changed to fig5.<br>Fig_S2 changed to fig6.<br>Fig_S3 changed to fig7.<br>Fig_S1 changed to fig8.<br>Fig_S5 changed to fig9.<br><br><br>
DOI: 10.17632/z6j5hj6vtv
title: SymbMat: Symbolic computation of quantum transition matrix elements

description: Abstract We have developed a set of Mathematica notebooks to compute symbolically quantum transition matrices relevant for atomic ionization processes. The utilization of a symbolic language allows us to obtain analytical expressions for the transition matrix elements required in charged-particle and laser induced ionization of atoms. Additionally, by using a few simple commands, it is possible to export these symbolic expressions to standard programming languages, such as Fortran or C, for the subseq... Title of program: SymbMat Catalogue Id: AEMI_v1_0 Nature of problem The notebooks generate analytical expressions for quantum transition matrix elements required in diverse atomic processes: ionization by ion, electron, or photon impact and ionization within the framework of strong field physics. In charged-particle collisions approaches based on perturbation theory enjoy widespread utilization. Accordingly, we have chosen the First Born Approximation and Distorted Wave theories as examples. In light-matter interactions, the main ingredient for many types of cal ... Versions of this program held in the CPC repository in Mendeley Data AEMI_v1_0; SymbMat; 10.1016/j.cpc.2012.03.020 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.6084/m9.figshare.11871420.v1
title: The international sinonasal microbiome study (ISMS) Dataset

description: Middle meatus swabs were collected from participants' sinuses for 16S rRNA gene sequencing (V3-V4 hypervariable region) on the Illumina MiSeq platform. Thirteen centres, across five continents, participated in the study. 532 samples (194 healthy controls and 338 chronic rhinosinusitis patients) successfully went through all stages of transport and processing to be sequenced.
DOI: 10.6084/m9.figshare.12630938.v1
title: Anxiom 450K SNP array for 480 Norwary spurce raw data + Array annotation file

description: Anxiom 450K SNP array data for 480 Norwary spurce samples + Array annotation file
DOI: 10.6084/m9.figshare.28271192.v1
title: Sangeetha.xlsx

description: The file contains the data generated from our empirical research <b>Exploring</b><b> </b><b>the</b><b> </b><b>Interplay</b><b> </b><b>Between</b><b> </b><b>Emotional</b><b> </b><b>Maturity</b><b> </b><b>and</b><b> </b><b>Job Satisfaction: Mediating and Moderating Roles of Emotional Intelligence among Health care S Sector Employees </b>This empirical study evaluated the relationship among emotional maturity and job satisfaction by surveying healthcare sector employees in Hyderabad, an Indian Metro. It also explored the emotional intelligence as a pathway on the nexus among emotional maturity and job satisfaction. The research assessed eight reflective lower-order constructs, including a single construct for emotional intelligence, and emotional maturity with its four sub-dimensions: emotional progression, emotional stability, personal integration, and social adjustment
DOI: 10.6084/m9.figshare.29117774.v1
title: 无标题项目实验数据GNOP pyrolysis

description: <b>本研究以中国江西南部的特色农林废弃物甘南脐橙皮为研究对象，研究了其在不同热解温度下的热解特性和产品特性。</b>
DOI: 10.6084/m9.figshare.13033382.v1
title: Visual acuity study data

description: Data of two centres in the study in the first file and of the third centre in the second file
DOI: 10.17632/j9mwxwb2zv
title: Dataset Yellow Disease

description: This dataset contains images of leaves of red chili, eggplant, and yard-long bean plants infected with yellowing disease. Yellowing and mosaic symptoms are symptoms that can be caused by Begomovirus infection and nutrient deficiencies. This data can be useful for further research on yellowing disease detection in the field and its control strategies.
DOI: 10.6084/m9.figshare.21119380.v1
title: DBpedia1M

description: DBpedia1M is a dataset for entity alignment in large-scale knowledge graphs, proposed by the CIKM-2022 paper "Large-scale Entity Alignment via Knowledge Graph Merging, Partitioning and Embedding".
DOI: 10.6084/m9.figshare.27284259.v1
title: Source_Data_Ning_et_al

description: A copy of source data for a Nature Electronics paper.
DOI: 10.6084/m9.figshare.28090190.v3
title: <b>Haplotype resolved chromosome-level genome assembly of the </b><b>gold barb</b><b> (</b><b><i>Barbodes semifasciolatus</i></b><b>)</b>

description: The gold barb (<i>Barbodes semifasciolatus</i>), a member of the Cyprinidae family, exhibits remarkable adaptability to highly acidic environments, making it an ideal model for studying extreme environmental adaptation. However, the genetic mechanisms underlying this resilience remain largely unexplored. To address this, we assembled a high-quality chromosome-scale genome for <i>B. semifasciolatus</i> using high-fidelity (HiFi) sequencing and Hi-C technology. The resulting haplotype-resolved assemblies, spanning 776 Mb and 779 Mb across 25 chromosomes, achieved genome coverages of 99.5% and 99.7%, respectively, and included four gap-free chromosomes. Genome quality assessment using BUSCO indicated a high completeness score of 98.3%, further validated by strong synteny with the zebrafish (<i>Danio rerio</i>), confirming the assembly's integrity and continuity. Through integration of full-length transcriptome data, RNA sequencing, and homology-based annotation, we identified 26,057 protein-coding genes and 2,087 pseudogenes. This high-resolution genome provides an essential resource for cyprinid research, offering critical insights into the molecular basis of acid tolerance and facilitating future studies on adaptive evolution in extreme environments.
DOI: 10.6084/m9.figshare.27875763.v2
title: Shallow-water Mussels (Mytilus galloprovincialis) Adapt to Deep-Sea Environment Through Transcriptomic and Metagenomic Insights

description: Recent studies have unveiled the deep sea as a rich biosphere, populated by species descended from shallow-water ancestors post-mass extinctions. Research on genomic evolution and microbial symbiosis has shed light on how these species thrive in extreme deep-sea conditions. However, early adaptation stages, particularly the roles of conserved genes and symbiotic microbes, remain inadequately understood. This study examined transcriptomic and microbiome changes in shallow-water mussels <i>Mytilus galloprovincialis </i>exposed to deep-sea conditions at the Site-F cold seep in the South China Sea. Results reveal complex gene expression adjustments in stress response, immune defense, homeostasis, and energy metabolism pathways during adaptation. After 10 days of deep-sea exposure, shallow-water mussels and their microbial communities closely resembled those of native deep-sea mussels, demonstrating host and microbiome convergence in response to adaptive shifts. Notably, methanotrophic bacteria, key symbionts in native deep-sea mussels, emerged as a dominant group in the exposed mussels. Host genes involved in immune recognition and endocytosis correlated significantly with the abundance of these bacteria. Overall, our analyses provide insights into adaptive transcriptional regulation and microbiome dynamics of mussels in deep-sea environments, highlighting the roles of conserved genes and microbial community shifts in adapting to extreme environments.
DOI: 10.6084/m9.figshare.27931566.v1
title: Drosophila_yakuba_mayottensis_rmaverick_MAF05

description: Population structure of Drosophila yakuba inferred by rmaverick using sites with minor allele frequency of ≥5%.
DOI: 10.6084/m9.figshare.5662306.v2
title: A walk in the maze: Variation in Late Jurassic tridactyl dinosaur tracks from the Swiss Jura Mountains (NW Switzerland). 3D photogrammetric models

description: All the collected and/or casted specimens, are stored and accessible at the PALA16 collections (Office de la Culture, 2900, Porrentruy, Switzerland) and will be transferred to the JURASSICA Muséum (Route de Fontenais 21, 2900, Porrentruy, Switzerland) at the end of 2018.Files are labelled accordingly the individual track IDs.<br><br> All photogrammetric models were generated with a Canon EOS 70D thought Agisoft Photoscan Pro (v. 1.3.2); number of photos used, accuracy and resolution of each models are in the associated pdf. "laser" in the file name indicates tracks that were laser-scanned in 2011 with a FARO Platinum Scanarm 3.0 m. Processing information in the associated pdf.<br> <b><i>Citation for this article</i></b>: Castanera D., Belvedere M., Marty D., Paratte G., Lovis C., Cattin M., and Meyer C.A. 2018. A walk in the maze: Variation in Late Jurassic tridactyl dinosaur tracks - A case study from the Late Jurassic of the Swiss Jura Mountains (NW Switzerland). PeerJ