cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34808/6qt2-e232
title: Dermatofibrosarcoma protuberans, fibrosarcomatous - Female, 65 - Tissue image [6100730023432921]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 65Clinical description: Breast tumor.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: FIBROMATOUS NEOPLASMSDiagnosis: Dermatofibrosarcoma protuberans, fibrosarcomatousResult of the histopathological examination: Fibrosarcomatous DFSP (dermatofibrosarcoma protuberans). IHC: vimentin (+), CD 34 (+), CK AE1/3 (-), Cam 5.2 (-), CK 34beta E12 (-), CK 5.6 (-), CK 14 (-), CK 7 (-), CK 19 (-), p63 (-), EMA (-), SMA- focal weakly (+), desmin (-), caldesmon (-), CD 10 focal (+), rec. estrogen rec (-), progesterone rec (-), Her 2 (0), S100 (-), Sox 10 (-), WT1- positive membrane reaction, CD117 (-), STAT 6 (-), Ki 67 20%.Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Central portion of breastType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/qx18-7031
title: LYMPH NODES, Iliac lymph node - Female, 70 - Tissue image [6100730023435121]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 70Clinical description: Tumor of the left adnexa.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: The lymph node is free of cancer metastasis.Sample:Material: FFPECollecting method: Surgical specimenTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Iliac lymph nodeType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/pm6b-h175
title: Abnormal histological findings - Female, 52 - Tissue image [610073002344391]

description: This is the histopathological image of CERVIX UTERI tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 52Clinical description: ASC-H in cytologyGender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XVIII - Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classifiedDiagnosis: Abnormal histological findingsResult of the histopathological examination: Exocervix fragments with slight chronic inflammation and LSIL (CIN1) foci. The cutting margins are normotypic.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: ExocervixType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/mrm9-h298
title: Dermatofibrosarcoma protuberans, fibrosarcomatous - Female, 65 - Tissue image [6100730023434121]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 65Clinical description: Breast tumor.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: FIBROMATOUS NEOPLASMSDiagnosis: Dermatofibrosarcoma protuberans, fibrosarcomatousResult of the histopathological examination: Fibrosarcomatous DFSP (dermatofibrosarcoma protuberans). IHC: vimentin (+), CD 34 (+), CK AE1/3 (-), Cam 5.2 (-), CK 34beta E12 (-), CK 5.6 (-), CK 14 (-), CK 7 (-), CK 19 (-), p63 (-), EMA (-), SMA- focal weakly (+), desmin (-), caldesmon (-), CD 10 focal (+), rec. estrogen rec (-), progesterone rec (-), Her 2 (0), S100 (-), Sox 10 (-), WT1- positive membrane reaction, CD117 (-), STAT 6 (-), Ki 67 20%.Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Central portion of breastType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/m662-jk71
title: Dermatofibrosarcoma protuberans, fibrosarcomatous - Female, 65 - Tissue image [610073002343941]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 65Clinical description: Breast tumor.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: FIBROMATOUS NEOPLASMSDiagnosis: Dermatofibrosarcoma protuberans, fibrosarcomatousResult of the histopathological examination: Fibrosarcomatous DFSP (dermatofibrosarcoma protuberans). IHC: vimentin (+), CD 34 (+), CK AE1/3 (-), Cam 5.2 (-), CK 34beta E12 (-), CK 5.6 (-), CK 14 (-), CK 7 (-), CK 19 (-), p63 (-), EMA (-), SMA- focal weakly (+), desmin (-), caldesmon (-), CD 10 focal (+), rec. estrogen rec (-), progesterone rec (-), Her 2 (0), S100 (-), Sox 10 (-), WT1- positive membrane reaction, CD117 (-), STAT 6 (-), Ki 67 20%.Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Central portion of breastType of staining: positive/IHCStaining: Not applicableAntibody: HER-2Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/2ng9-5792
title: Serous adenocarcinoma, NOS - Female, 70 - Tissue image [6100730023426101]

description: This is the histopathological image of OTHER AN UNSPECIFIED FEMALE GENITAL ORGANS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 70Clinical description: Tumor of the left adnexa.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: CYSTIC, MUCINOUS AND SEROUS NEOPLASMSDiagnosis: Serous adenocarcinoma, NOSResult of the histopathological examination: Serous tubal intraepithelial carcinoma (STIC).Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: OTHER AN UNSPECIFIED FEMALE GENITAL ORGANSTissue: Fallopian tubeType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/gtb9-jp75
title: Benign neoplasm of ovary - Female, 70 - Tissue image [6100730023432301]

description: This is the histopathological image of OTHER AN UNSPECIFIED FEMALE GENITAL ORGANS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 70Clinical description: Tumor of the left adnexa.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter II - NeoplasmsDiagnosis: Benign neoplasm of ovaryResult of the histopathological examination: Serous carcinoma of the fallopian tube.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: OTHER AN UNSPECIFIED FEMALE GENITAL ORGANSTissue: Fallopian tubeType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/qycm-xh89
title: Seminoma, NOS - Male, 28 - Tissue image [6100730023443851]

description: This is the histopathological image of TESTIS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 28Clinical description: Testicular tumor.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: GERM CELL NEOPLASMSDiagnosis: Seminoma, NOSResult of the histopathological examination: Seminoma. IHC: PLAP(+), CD117(+), OCT3/4(+), Glypican3(-), CD30(-).Sample:Material: FFPECollecting method: Surgical specimenTopography: MALE GENITAL ORGANSOrgan: TESTISTissue: Descended testisType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/nt8d-y149
title: OTHER AN UNSPECIFIED FEMALE GENITAL ORGANS, Parametrium - Female, 70 - Tissue image [6100730023427451]

description: This is the histopathological image of OTHER AN UNSPECIFIED FEMALE GENITAL ORGANS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 70Clinical description: Tumor of the left adnexa.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: The parametrium is free of cancer.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: OTHER AN UNSPECIFIED FEMALE GENITAL ORGANSTissue: ParametriumType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/w7qq-v593
title: Serous adenocarcinoma, NOS - Female, 70 - Tissue image [6100730023439221]

description: This is the histopathological image of RETROPERITONEUM AND PERITONEUM tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 70Clinical description: Tumor of the left adnexa.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: CYSTIC, MUCINOUS AND SEROUS NEOPLASMSDiagnosis: Serous adenocarcinoma, NOSResult of the histopathological examination: The peritoneal surface with serous carcinoma implants.Sample:Material: FFPECollecting method: Surgical specimenTopography: RETROPERITONEUM AND PERITONEUMOrgan: RETROPERITONEUM AND PERITONEUMTissue: Peritoneum NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.6084/m9.figshare.19761394
title: Supplementary Material for: Treatment practices and confidence in the management of pediatric metabolic bone disorders

description: Introduction: Pediatric metabolic bone diseases encompass a wide variety of disorders that can be challenging to diagnose and treat because of inadequate physician training about optimal management. Methods: As practice variation and confidence levels may impact clinical outcome, we sought to assess physician confidence in managing pediatric metabolic bone disorders and the spectrum of treatment practices among members of the Pediatric Endocrine Society (PES) and the Canadian Pediatric Endocrine Group (CPEG). Questionnaires were distributed via e-mail to all members of the PES and CPEG and 244 were completed. Responses were summarized using descriptive statistics, and proportions were compared using χ2 or Fisher’s exact tests, as appropriate. Results: Variations were observed amongst the respondents’ confidence in the management of bone disorders and in the criteria used to initiate/discontinue intravenous bisphosphonates or prescribe burosumab therapy. Respondents felt confident with the management of four out of 20 pediatric bone conditions (confidence was defined as &gt;90% of respondents reporting feeling “somewhat confident” or “very confident”). Physicians working in a bone clinic were more confident in prescribing burosumab for the treatment of X-linked hypophosphatemic rickets compared to those not working in a bone clinic (65% versus 47%, p = 0.03). Most respondents (52%) reported having received inadequate training in pediatric bone and mineralization disorders. Discussion/conclusion: Dedicated training, knowledge acquisition and education resources are needed to increase confidence and standardize the use of bone-targeted therapies.
DOI: 10.5281/zenodo.6630184
title: A database of plant-pollinator networks

description: This database assembles different published datasets of observed interaction networks between plants and pollinators, which were extracted from articles, theses and existing online databases. Each row in the data table corresponds to an interaction between a plant and a pollinator species reported at a given site by a given publication.
DOI: 10.5281/zenodo.4300426
title: A database of plant-pollinator networks

description: This database assembles different published datasets of observed interaction networks between plants and pollinators, which were extracted from articles, theses and existing online databases. Each row in the data table corresponds to an interaction between a plant and a pollinator species reported at a given site by a given publication.
DOI: 10.6084/m9.figshare.20046713
title: N=2881.xlsx

description: The impact of adolescents' climate change beliefs on energy conservation behavior in Beijing.
DOI: 10.6084/m9.figshare.20046713.v1
title: N=2881.xlsx

description: The impact of adolescents' climate change beliefs on energy conservation behavior in Beijing.
DOI: 10.6084/m9.figshare.19786147
title: Metadata of nasopharyngeal microbiota samples

description: Metadata of nasopharyngeal microbiota samples
DOI: 10.6084/m9.figshare.19786147.v1
title: Metadata of nasopharyngeal microbiota samples

description: Metadata of nasopharyngeal microbiota samples
DOI: 10.6084/m9.figshare.19786102
title: Nasopharyngeal microbiota abundance. At family, genus, species level.

description: OTU tables of nasopharyngeal microbiota abundance at family, genus and species level. Identification worfflow: 16s profiling IonReporter
DOI: 10.6084/m9.figshare.19786102.v1
title: Nasopharyngeal microbiota abundance. At family, genus, species level.

description: OTU tables of nasopharyngeal microbiota abundance at family, genus and species level. Identification worfflow: 16s profiling IonReporter
DOI: 10.6084/m9.figshare.19785991
title: Nasopharyngeal microbiota fastq files

description: fastq files corresponding to the sequencing of human nasopharyngeal microbiota
DOI: 10.6084/m9.figshare.19785991.v1
title: Nasopharyngeal microbiota fastq files

description: fastq files corresponding to the sequencing of human nasopharyngeal microbiota
DOI: 10.15151/esrf-es-771244587
title: Macromolecular Crystallography in Bordeaux/Lyon/Toulouse IECB IBGC CBMN / IBCP-MMSB ICBMS / IPBS

description: The different research teams who are part of this BAG are located in Bordeaux, Lyon and Toulouse. They are mainly working on worldwide health concerns or biotechnological relevant projects. In more details, infectiology, molecular assemblies, biosynthetic pathways or glycobiology are their main research axises. Important results have been obtained so far regarding the development of new therapeutic strategies against several infectious diseases or regarding plastic bioremediation. In order to go further into details of all these studies, access to ESRF facilities is a requirement.
DOI: 10.15151/esrf-es-812558257
title: Illuminating nanoparticle retention in porous media in situ (preparation of EV504)

description: The goal is to visualise dynamically nanoparticle (NP) aggregation and retention processes in porous media. In particular to optimize the imaging conditions and probe, whether this can be done with fewer projections and/or shorter exposure time to increased time resolution. Until now, these processes have been mainly interpreted based on simple inverse modelling of NP breakthrough curves from macroscale column experiments, based on hypothesized mechanisms. In fact, there is no direct proof of the hypothesised aggregation and retention processes and most importantly, little knowledge of how they rely on characteristics of the porous media and injection conditions. We intend to perform the first in situ experiments on the transport process of NPs and aggregates thereof in porous media using in situ X-ray microCT. We need in situ data to be able to identify the exact processes that lead to NP mass accumulation inside the porous media.
DOI: 10.15151/esrf-es-841612512
title: Graphene growth on liquid metals. Continuation of running experiment MA-5338 with the same safety requirements.

description: Liquid metal catalysts (LMCats) bear the prospect of continuous 2D materials (2DM) production with unprecedented structural quality, efficiency, and speed. We have previously succeeded in studying the chemical vapor deposition (CVD) growth of graphene on liquid copper at 1370 K (see the previous publications). Meanwhile, growing graphene on liquid catalysts at lower temperatures is of great technical and economic interest. One important candidate is tin, which has a relatively low melting point (505 K) and an exceptionally low vapor pressure. However, tin has very low catalytic activity for graphene growth. Hence, an alloy between tin and a more active metal can provide a compromise between a lower melting point and enough catalytic activity. This proposal aims to grow graphene on a liquid Cu-Sn alloy surface and study the interactions and the atomic structure of the Gr/Cu-Sn interface using XRR, GIXD, and XRF. This is to be done using the dedicated liquid diffractometer at ID10.
DOI: 10.25919/g82k-q013
title: NVCL Case Study: Greenbushes (C3DD024)

description: This is a .tdg file of a HyLogger Dataset for drill hole C3DD024 from the Greenbushes Li-Sn-Ta pegmatite deposit of Western Australia. It is for training purposes and allows full TSG capability without a TSG license.
DOI: 10.6084/m9.figshare.19838083
title: Dataset

description: Infectious keratitis is a group of corneal disorders in which corneal tissues suffer inflammation and damage caused by pathogenic infections. Among these, Fungal Keratitis (FK) and Acanthamoeba Keratitis (AK) are some of the most severe, with a high chance of permanent blindness if they are not diagnosed early and accurately. In Vivo Confocal Microscopy (IVCM) allows the imaging of different layers of the cornea, providing an important tool for an early and more accurate diagnosis. In this paper, we introduce the IVCM-Keratitis dataset consisting of a total of 4001 sample images of AK and FK, as well as Non-Specific Keratitis (NSK) and healthy corneas classes. We also use this dataset to develop multiple deep-learning models based on Convolutional Neural Networks (CNNs) for the automated diagnosis of infectious keratitis. Among these models, Densenet161, had the best performance with accuracy, precision, recall, and F1 score of 93.55%, 92.52%, 94.77%, and 96.93%, respectively. These results demonstrate the potential of deep learning-based models in early and automated diagnosis of AK and FK. We further showed that these models can be used to highlight the areas of infection in the IVCM images and explain the reason behind their diagnosis by utilizing saliency maps as a technique used in eXplainable Artificial Intelligence (XAI) to interpret these models.
DOI: 10.14458/rsu.res.2022.18
title: Applied System Identification to the P matrix for adaptive P controller implementation in robotic arm simulation using Matlab/Simulink
DOI: 10.6084/m9.figshare.19609812
title: Spontaneous bacterial empyema: a tertiary care center experience and a systematic review

description: Spontaneous bacterial empyema (SBE) is an infection of a preexisting hepatic hydrothorax (HH). We aim to describe the experience in managing SBE in a liver transplant (LT) referral center and assessing the incidence and mortality rates of SBE after conducting a systematic review. 992 patients with cirrhosis were retrospectively reviewed from 2015 to 2020. SBE was diagnosed by (i) positive microbiological culture and polymorphonuclear leukocyte count &gt;250 cells/µL or (ii) negative microbiological culture, compatible clinical course, and polymorphonuclear count &gt;500 cells/µL in pleural fluid. Furthermore, we conducted a comprehensive literature search of MEDLINE, EMBASE, and Google Scholar for studies evaluating SBE. Twelve patients (10.4%) had spontaneous bacterial empyema out of 115 patients with HH. Five patients underwent LT, 6 had died, and 1 did not get transplanted and was alive throughout the duration of follow-up. Ten studies were included in the systematic review. Pooled incidence in patients with HH was 19.03%. Only 20.69% of the patients received a LT. Pooled mortality rate was 46.45%, with only 3.45% of the patients dying post-transplant. SBE is a severe complication of cirrhosis and HH. LT may provide a survival benefit. Thus, patients should be considered for early transplant.
DOI: 10.6084/m9.figshare.19609812.v1
title: Spontaneous bacterial empyema: a tertiary care center experience and a systematic review

description: Spontaneous bacterial empyema (SBE) is an infection of a preexisting hepatic hydrothorax (HH). We aim to describe the experience in managing SBE in a liver transplant (LT) referral center and assessing the incidence and mortality rates of SBE after conducting a systematic review. 992 patients with cirrhosis were retrospectively reviewed from 2015 to 2020. SBE was diagnosed by (i) positive microbiological culture and polymorphonuclear leukocyte count &gt;250 cells/µL or (ii) negative microbiological culture, compatible clinical course, and polymorphonuclear count &gt;500 cells/µL in pleural fluid. Furthermore, we conducted a comprehensive literature search of MEDLINE, EMBASE, and Google Scholar for studies evaluating SBE. Twelve patients (10.4%) had spontaneous bacterial empyema out of 115 patients with HH. Five patients underwent LT, 6 had died, and 1 did not get transplanted and was alive throughout the duration of follow-up. Ten studies were included in the systematic review. Pooled incidence in patients with HH was 19.03%. Only 20.69% of the patients received a LT. Pooled mortality rate was 46.45%, with only 3.45% of the patients dying post-transplant. SBE is a severe complication of cirrhosis and HH. LT may provide a survival benefit. Thus, patients should be considered for early transplant.