cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25499494.v1
title: Supplementary Material for: Development of A New Scoring System in Higher Animals for Testing Cognitive Function in the Newborn Period: Effect of Prenatal Hypoxia-Ischemia

description: Introduction
Enhanced models for assessing cognitive function in the neonatal period are imperative in higher animals. Postnatal motor deficits, characteristic of cerebral palsy, emerge in newborn kits within our prenatal-rabbit model of hypoxia-ischemia (HI). In humans, prenatal HI leads to intellectual disability and cerebral palsy. In a study examining cognitive function in newborn rabbits, we explored several questions. Is there a distinction between conditioned and unconditioned kits? Can the kits discern the human face or the lab coat? Do motorically-normal kits, born after prenatal HI, exhibit cognitive deficits?
Methods 
The conditioning protocol was randomly assigned to kits from each litter. For conditioning, the same human, wearing a lab coat, fed the rabbit kits for 9 days before the cognitive test. The 6-arm radial maze was chosen for its simplicity and ease of use. Normally appearing kits, born after uterine ischemia at 79% or 92% term in New Zealand White rabbits, were compared to Naïve kits. On postpartum day 22/23 or 29/30, the 6-arm maze helped determine if the kits recognized the original feeder from bystander (Test-1) or the lab coat on bystander (Test-2). The use of masks of feeder/bystander (Test-3) assessed confounding cues. A weighted score was devised to address variability in entry to maze arms, time, and repeated-trial learning.
Results
In conditioned kits, both Naïve and HI kits exhibited a significant preference for the face of the feeder, but not the lab coat. Cognitive deficits were minimal in normal-appearing HI kits. 
Conclusion
The weighted score system was amenable to statistical manipulation.
DOI: 10.6084/m9.figshare.28254312.v1
title: Code for solving the Cahn-Hilliard equation in 1D radial coordinates from A first-order hyperbolic reformulation of the Cahn-Hilliard equation

description: Parallelized code for solving the original Cahn-Hilliard equation in 1D radial coordinates. Allows to reproduce the reference solution in figure 8.
DOI: 10.17632/v72gp37n74
title: Aerial photographs and sea-buckthorn classification results

description: Aerial photographs were used to map the cover of sea-buckthorn (Hippophae rhamnoides L.) in the eastern part of the Wadden Island of Ameland (53°27'43"N, 5° 54'12"E). The aerial photgraphs in this dataset were mosaicked, georectified and georeferenced before applying a supervised classification to map sea-buckthorn cover. More information can be found in the publication entitled: "Population dynamics of the shrub sea-buckthorn as indicator of sea-level rise and insect outbreaks". In the zipped datafile, a document describing the data in each folder can be found.
DOI: 10.6084/m9.figshare.26826700.v1
title: Animal Traceability Ontology (ATO) for Botswana

description: This paper presents the development of an ontology-driven framework for animal traceability, focusing on enhancing the efficiency and accuracy of traceability systems in Botswana. The study outlines a systematic approach to ontology development, which includes key phases such as knowledge acquisition, conceptualization, and implementation. Knowledge was acquired through interviews, questionnaires, and literature review, targeting key stakeholders involved in animal traceability. The conceptualization phase involved organizing this knowledge into structured models, including taxonomies, concept dictionaries, and relational tables, to define entities, relationships, and constraints relevant to the traceability domain. The ontology integrates various components, such as identification, tracking, and traceability, to ensure comprehensive coverage of the domain. By facilitating interoperability, knowledge extraction, and data sharing across different platforms, the ontology enhances the reusability and standardization of traceability data. The results demonstrate the ontology's capability to accurately represent real-world practices and support regulatory compliance, ultimately contributing to more effective monitoring and management of animal health and movement. This research provides a foundational framework that can be adapted and applied to similar contexts, offering valuable insights into the design and implementation of ontology-driven traceability systems in other regions and sectors.
DOI: 10.6084/m9.figshare.649343.v1
title: Procedure Files

description: These are the procedure files that correspond to Computer Code for Materials Scientists: Igor Pro Procedures for Analyzing Dynamic Light Scattering, Rheology, and Synchrotron X-ray Scattering Data.
DOI: 10.6084/m9.figshare.24550447.v1
title: tCRE atlas supplementary tables

description: Supplementary Tables for the manuscript: A single-cell atlas of transcribed cis-regulatory elements in the human genome
DOI: 10.6084/m9.figshare.29149025.v1
title: Source data for: Epigenetic activation of MTNR1A signaling via CRISPR/dCas9-Tet1 improves porcine oocyte maturation and embryo development

description: This dataset contains the source data supporting the manuscript's findings titled "Epigenetic activation of MTNR1A signaling via CRISPR/dCas9-Tet1 improves oocyte maturation: implications for human assisted reproduction."The data includes raw numerical values used to generate figures and tables, full uncropped gel images for Western blots, and detailed outputs from quantitative real-time PCR, bisulfite sequencing, and assays for oocyte maturation, cumulus expansion, embryo development, ROS/GSH levels, and gene/protein expression analyses.
DOI: 10.17632/8cjjsxstfc
title: CIRP Annals 2025: Comparison of three hybrid metal additive-subtractive manufacturing processes

description: This data set contains the Supplemental Material for the CIRP Annals Manufacturing Technology (Vol. 74, Issue 1) paper titled "Comparison of three hybrid metal additive-subtractive manufacturing processes." This journal is published by Elsevier: https://www.sciencedirect.com/journal/cirp-annals. This data set contains a detailed descriptions of the operating procedures, raw data collected, and processed data. It is organized based on the figure or table the data appears in the manuscript. Start with the text file titled "READ ME FIRST.txt"

Manuscript Abstract: The objective of this work is to compare three different hybrid metal additive-subtractive manufacturing processes to enable decision-making and future research. This was achieved by producing the same artifact out of 316L stainless steel with - Friction Surfacing, Wire Arc Additive Manufacturing, and Laser Powder Directed Energy Deposition. Key process outcomes including cycle time, resource consumption, distortion, energy consumption, microstructure, hardness, and tensile strength were analyzed. It was observed that: Friction Surfacing demonstrates higher hardness due to its solid-state nature; Wire Arc Additive Manufacturing offers lower cycle times and resource consumption; and Directed Energy Deposition provides near net shape geometries.
DOI: 10.6084/m9.figshare.11874372.v1
title: SNP_LOC_DATA.rda

description: This file is used by MAGMA_Celltyping R package and is too large to store in github <br><br> tmpF1 = tempfile() tmpF2 = tempfile()<br> download.file("https://ctg.cncr.nl/software/MAGMA/ref_data/g1000_eur.zip",tmpF1)<br> library(R.utils)<br> unzip(tmpF1,exdir=dirname(tmpF1)) <br> library(data.table)<br> snpsALL = data.table::fread(sprintf("%s/g1000_eur.bim",dirname(tmpF1)))<br> g1000_snps = as.character(snpsALL$V2)<br> <br> #tmpF1 = tempfile()<br> #tmpF2 = tempfile()<br> #download.file("https://data.broadinstitute.org/alkesgroup/LDSCORE/w_hm3.snplist.bz2",tmpF1)<br> #library(R.utils)<br> #gunzip(tmpF1,tmpF2)<br> #whm3 = read.table(tmpF2,stringsAsFactors = FALSE)<br> #hm3_rsids = whm3[,1]<br> <br> # Get GRCh37 locations<br> #source("https://bioconductor.org/biocLite.R")<br> #BiocManager::install("SNPlocs.Hsapiens.dbSNP144.GRCh37")<br> library("SNPlocs.Hsapiens.dbSNP144.GRCh37")<br> snps #g1000_snps = g1000_snps[grep("^rs",g1000_snps)]<br> snp_locs = snpsById(snps, g1000_snps,ifnotfound="drop")<br> SNP = mcols(snp_locs)$RefSNP_id<br> CHR = as.character(seqnames(snp_locs)) #seqnames(snp_locs)<br> BP = pos(snp_locs)<br> SNP_DATA_GRCh37 = data.frame(SNP=SNP,CHR=CHR,BP=BP,Build="GRCh37",stringsAsFactors=FALSE)<br> #SNP_DATA_GRCh37 = data.table(SNP=SNP,CHR=CHR,BP=BP,Build="GRCh37")<br> #usethis::use_data(SNP_DATA_GRCh37,overwrite = TRUE)<br> <br> # Get GRCh38 locations<br> #source("https://bioconductor.org/biocLite.R")<br> #BiocManager::install("SNPlocs.Hsapiens.dbSNP144.GRCh38")<br> library(SNPlocs.Hsapiens.dbSNP144.GRCh38)<br> snps snp_locs = snpsById(snps, g1000_snps,ifnotfound="drop")<br> SNP = mcols(snp_locs)$RefSNP_id<br> CHR = as.character(seqnames(snp_locs))<br> BP = pos(snp_locs)<br> SNP_DATA_GRCh38 = data.frame(SNP=SNP,CHR=CHR,BP=BP,Build="GRCh38",stringsAsFactors=FALSE)<br> #usethis::use_data(SNP_DATA_GRCh38,overwrite = TRUE)<br> <br> # Save to package /data/<br> SNP_LOC_DATA = rbind(SNP_DATA_GRCh37,SNP_DATA_GRCh38)<br> usethis::use_data(SNP_LOC_DATA,overwrite = TRUE)
DOI: 10.6084/m9.figshare.12799985.v1
title: Supplementary Material for: Relative Cerebellum Size Is Not Sexually Dimorphic across Primates

description: <b><i>Background/Aims:</i></b> Substantive sex differences in behavior and cognition are found in humans and other primates. However, potential sex differences in primate neuroanatomy remain largely unexplored. Here, we investigate sex differences in the relative size of the cerebellum, a region that has played a major role in primate brain evolution and that has been associated with cognitive abilities that may be subject to sexual selection in primates. <b><i>Methods:</i></b> We compiled individual volumetric and sex data from published data sources and used MCMC generalized linear mixed models to test for sex effects in relative cerebellar volume while controlling for phylogenetic relationships between species. Given that the cerebellum is a functionally heterogeneous structure involved in multiple complex cognitive processes that may be under selection in males or females within certain species, and that sexual selection pressures vary so greatly across primate species, we predicted there would be no sex difference in the relative size of the cerebellum across primates. <b><i>Results:</i></b> Our results support our prediction, suggesting there is no consistent sex difference in relative cerebellum size. <b><i>Conclusion:</i></b> This work suggests that the potential for sex differences in relative cerebellum size has been subject to either developmental constraint or lack of consistent selection pressures, and highlights the need for more individual-level primate neuroanatomical data to facilitate intra- and inter-specific study of brain sexual dimorphism.
DOI: 10.6084/m9.figshare.14601735.v1
title: Appendix 6.2 Data of US-China trade disputes

description: The dataset contains WeChat posts uploaded by the 47 most influential public accounts from April 29, 2019, to May 31, 2019.
DOI: 10.6084/m9.figshare.16850419.v3
title: #GlobalCollembola: site-level database and analyses

description: Site-level database of the #GlobalCollembola initiative and programming code for path analysis and geospatial modelling in the synthesis publication: "Globally invariant metabolism but density-diversity mismatch in springtails". Four files are attached: 1) GCdatabase_sites.csv - site-level database structured for path analysis 2) Rcode_PathAnalysis - markdown pdf with the R code for path analysis 3) 20210527_collembola_sampled.csv - site-level database structured for geospatial modelling 4) 20210630_collembola_pipeline.py - the Python code for geospatial modelling 4) #GCdatabase Events - sampling even database used for additional analysis (accounting for the sampling year and months)
DOI: 10.6084/m9.figshare.20288745.v2
title: Benchmark dataset for rMSA

description: groundtruth.zip - PDB structures, contacts and secondary structure of benchmark dataset <br> msa.zip - input sequences and alignments from rMSA and third-party programs of benchmark dataset <br> lncRNA.zip - input sequences and alignments for three lncRNAs (RepA, HOTAIR, SRA). <br>
DOI: 10.17632/7nytb9dj44
title: Central lipid sensing pathways contribute to the control of puberty and its alterations in conditions of obesity

description: Supplemental data and Source data
DOI: 10.6084/m9.figshare.11225900.v1
title: Supplementary files "recurrent aphthous stomatitis and quality of life".

description: Supplementary files "thrush and quality of life".
DOI: 10.6084/m9.figshare.11918742.v1
title: Hoja Excel con la Base de Datos completa

description: Hoja Excel con la Base de Datos completa
DOI: 10.6084/m9.figshare.16540353.v1
title: Table S3 and S6 (expanded): Full PPAs between each pair of eGenes or eIsoforms

description: This R object includes a list of three elements, each corresponding to the colocalization results between: 1) eIsoform vs. eIsoform; 2) eGene vs. eGene; and 3) eIsoform vs. eGene. Each element is a data frame with the following information: tested variants, posterior probabilities of association (PPA) 0-4; gene or transcript IDs; eQTL types (0 = primary; 1-5 = conditional); variant ID of the variant with highest PPA, allele frequency, chromosome, position reference allele, alternative allele, p-values for both eQTLs; and PPA for the variant.
DOI: 10.6084/m9.figshare.16745983.v1
title: SSR primers designed against the microsatellite motifs in Acacia pachyceras

description: Primers were designed against the microsatellite regions identified in the genome of Acacia pachyceras
DOI: 10.6084/m9.figshare.19860883.v1
title: Raw data on curve carapace length from Changes in mean body size in an expanding population of a threatened species

description: Raw data on curve carapace length
DOI: 10.6084/m9.figshare.28973087.v1
title: Data of PE in topsoil and subsoil

description: We compiled a global dataset using 41 studies that simultaneously investigated priming effects in topsoils and subsoils at corresponding sites with addition of simple C (<i>e.g.</i> glucose) or complex C (<i>e.g.</i> plant litter). The difference in the priming effect caused by simple and complex C between subsoil and topsoil depended on ecosystem type.
DOI: 10.1184/r1/7890488.v3
title: Compiled historical daily temperature and precipitation data for the U.S. cities

description: Compiled historical daily temperature and precipitation data for 210 U.S. cities.<br>Cities were selected based on lengths of existing climate records, which start at least earlier than 1900. However, cities may miss substantial amounts of data during their periods of record.<br>Each file provides available historical daily maximum and minimum temperature and daily precipitation data for one U.S. city. File was named by the city's current active weather station ID (GHCN ID).<br>Each city may include records from one or multiple stations. Listed latitude and longitude for each city are from the city's current active weather station.<br>Daily maximum and minimum temperature and daily precipitation were acquired from Applied Climate Information System (ACIS), developed by the NOAA Northeast Regional Climate Center (NRCC).<br>The historical observations from ACIS belong to Global Historical Climatological Network - daily (GHCN-D) datasets.<br>The included stations were based on NRCC’s “ThreadEx” project, which combined daily temperature and precipitation extremes at 255 NOAA Local Climatological Locations, representing all large and medium size cities in U.S. (Owen et al. 2006).<br>See included README file for more information.<br><br>Other datasets from the same project can be accessed at: https://kilthub.cmu.edu/projects/Use_of_historical_data_to_assess_regional_climate_change/61538<br><br>ACIS database for historical observations: http://scacis.rcc-acis.org/<br><br>Additionally, GHCN-D datasets can also be accessed at: ftp://ftp.ncdc.noaa.gov/pub/data/ghcn/daily/<br>Station information for each city can be accessed at: http://threadex.rcc-acis.org/<br><br>- 2020 January updated -<br>1. Temperature and precipitation records for 2019 were added (using values from GHCN-D at: ftp://ftp.ncdc.noaa.gov/pub/data/ghcn/daily/).<br>2. *CITY_ID*.csv files were already filled the missing values (represented with NA) to make to continuous time series from start of record to the end of 2019. *CITY_ID*_fill.csv files from the older version were deleted.<br>- 2019 June updated -<br>1. Baltimore (USW00093721) data for 2018 was updated (previously 2018 data appeared to be NA). Original files for Baltimore were removed.<br>2. The GHCN ID for Baltimore was updated to be the ID for Baltimore-Washington International AP. city_info file was updated accordingly.
DOI: 10.17632/jvhyr9jnrn
title: Ultra-processed food and unprocessed/minimally processed food emotional responses dataset

description: Dataset of Brazilian participants (University students). Participants (n= 174; 144 women; mean age = 20.7 years; standard deviation = 4.35) performed two tasks. In the first task, 16 pictures of foods (8 UPF and 8 UMPF), and 74 pictures from other affective categories (from the International Affective Pictures System, IAPS; Lang, Bradley & Cuthbert, 2008), were presented. After viewing each picture, the participants rated it along two basic dimensions of emotion through the Self-Assessment Manikin scale: pleasantness and arousal. In the second task, the participants viewed the same food pictures, and they rated their intention to consume the foods depicted in the pictures. The dataset contains: 
1) Table 1 with information about the level of emotional evocativeness of each picture (food pictures and pictures from IAPS).
2) Table 2 with information about the affective ratings per participant.
3) Table 3 with information about the intention to consume ratings per participant.
DOI: 10.6084/m9.figshare.21067804.v8
title: Supplementary data.xlsx

description: Olivine major, trace elements, water contents and He isotope compositions.
DOI: 10.6084/m9.figshare.29082791.v1
title: Results of the Benchmark Dataset with 28 document pairs

description: Set of results for the benchmark dataset for long text similarity research. The results were tested with the following language modelsall-MiniLM_6_v2all-MiniLM-L12-v2all-mpnet-base-v2glove.6B.300dLongformerBigBirdGPT2BARTThe repository containing the code and dataset is available at:https://github.com/omarzatarain/long-texts-similarity<br><br>
DOI: 10.6084/m9.figshare.3496802.v1
title: Cover letter

description: Cover letter for resubmissions of revised article
DOI: 10.17632/jmd69fbd94
title: Physico-chemical characterization of a panel of cross-linked polyester implants

description: This dataset describes the physico-chemical properties of four distinct aliphatic polyesters functionalized with pendant allyl groups as well as corresponding cross-linked disc-shaped implants including the loading and in vitro release of the anti-viral drug tenofovir alafenamide. This data builds on previously published work loading cross-linked valerolactone-based implants with paclitaxel (doi: 10.1016/j.ejps.2021.105808).
DOI: 10.17632/vhyykrs5pr
title: Data for: Flood susceptibility mapping leveraging open-source remote-sensing data and machine learning approaches in Nam Ngum River Basin (NNRB), Lao PDR

description: This dataset is the data used for flood susceptibility modeling of Nam Ngum River Basin (NNRB) of Lao PDR based on eleven flood conditioning factors. The data and flood points are used for the application of machine learning algorithms for flood susceptibility mapping of Nam Ngum River Basin (NNRB). This database includes Jupyter Notebook codes for FSM using Random Forest, Support Vector Machine, Artificial 
Neural Networks, and Long Short-Term Memory
DOI: 10.17605/osf.io/nu2ep
title: Convolutional networks can model the functional modulation of MEG responses during reading

description: Convolutional networks can model the functional modulation of MEG responses during reading
DOI: 10.17632/r9mrt9fw8y
title: OHCD_GIETV1

description: Odia Simple character dataset consists of Annotate Simple Odia character which consists of 1, 32,353 examples of image data. The original scanned images from Handwritten Character were sized normalized to fit in a 128x128 pixel box while preserving their aspect ratio.
Six files are available:
• Grayscale Images consists of 34,138 
• Binary Images consists of 34,138 
• Inverted Images consists of 34,138 
For research purpose the dataset is being augmented 
• Grayscale Images consists of 9,939 
• Binary Images consists of 10,000 
• Inverted Images consists of 10,000
DOI: 10.6084/m9.figshare.24647844.v1
title: 中间输入失真和全要素生产率

description: The data come from the WIOD database, and we collate data on China's total output (y), labour (l), capital (k), industrial intermediate inputs (m) and intermediate services (q), calculate the output elasticities of the two types of intermediates, and compute the loss of total factor productivity due to distortions in intermediate inputs.
DOI: 10.6084/m9.figshare.26090575.v1
title: Example dataset containing Fast5 and BAM files

description: Used as the example dataset of Delter (https://github.com/nkuyfq/Delter).
DOI: 10.17632/39tkypvgjs
title: Oligostilbenoids from Vatica lowii King (Dipterocarpaceae) and their chemotaxonomic significance

description: Supplementary data for Oligostilbenoids from Vatica lowii King (Dipterocarpaceae) and their chemotaxonomic significance
DOI: 10.17632/ckgvrft232
title: TIGPR: A Multi-View Ground Penetrating Radar Detection Data for Damage Assessment of Transportation Infrastructure

description: The TIGPR dataset is a comprehensive collection of ground-penetrating radar (GPR) images for detecting damage in transportation infrastructure, including roads, bridges, tunnels, and airports. This dataset encompasses common types of damage found in transportation infrastructure, such as cracks, interlayer debonding, looseness, and voids. The images were collected from real-world surveys of highways, bridges, tunnels, and municipal roads in regions such as Guizhou, Jinhua, and Nanjing. The equipment used includes the 2D GPR equipment: IDS-FastWave and MALA GX750, as well as the 3D GPR equipment GeoScope 3D-Radar. The 2D GPR systems captured B-scan images with a resolution of 200 × 200 pixels, while the 3D GPR system provided both B-scan and C-scan images with a resolution of 320 × 320 pixels. The image dimensions correspond to actual infrastructure scales, with a length of 10 meters and a depth of 1 meter. This dataset integrates information from multiple damage types and views, supporting the development of deep learning models for the detection, classification, and segmentation of transportation infrastructure damage. It has the potential to enhance non-destructive testing and automated evaluation of transportation infrastructure.