cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17189946
title: Thinking in Graph

description: This is a Dataset that supports the Thinking in graph system.
DOI: 10.5281/zenodo.17189945
title: Thinking in Graph

description: This is a Dataset that supports the Thinking in graph system.
DOI: 10.15468/efpgbu
title: Kallisti Limnes subsea pools Metagenome Study

description: Metagenome studies of the Kallisti Limnes, carbon dioxide-accumulating subsea pools
DOI: 10.15468/dl.d4jqt5
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "OccurrenceStatus is Present",
 "TaxonKey is Cinnamomum septentrionale"
 ]
}

 The dataset includes 159 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011133-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8wk4xm
title: Occurrence Download

description: A dataset containing 171 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sarracenia purpurea",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 171 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011132-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9wbs8m
title: Occurrence Download

description: A dataset containing 134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sarracenia purpurea",
 "Country is Germany",
 "HasCoordinate is true"
 ]
}

 The dataset includes 134 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011135-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16580108
title: Density of states in Sp(4) gauge theory with Nt=5 and large volumes - Data release

description: The dataset is used as the input to the the analyses presented in the paper Finite-temperature Yang-Mills theories with the density of states method: towards the continuum limit. For more information see the `README.md` file.
description: We would like to thank Stephan J. Huber, David Mateos, and Manuel Reichert for useful discussions. We thank Frederic D. R. Bonnet for help in benchmarking our code.

The work of E.B. and B.L. is supported in part by the EPSRC ExCALIBUR programme ExaTEPP (project EP/X017168/1). The work of E.B. has also been supported by the UKRI Science and Technology Facilities Council (STFC) Research Software Engineering Fellowship EP/V052489/1. E.B., B.L., and M.P. have been supported in part by the STFC Consolidated Grant No. ST/X000648/1. B.L. has been supported in part by the STFC Consolidator Grant No. ST/X00063X/1. B.L. and M.P. have been supported in part by the STFC  Consolidated Grant No. ST/T000813/1.B.L. and M.P. received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program under Grant Agreement No. 813942. D.M. has been supported in part by a studentship awarded by the Data Intensive Centre for Doctoral Training, which is funded by the STFC grant ST/P006779/1.D.V. is supported in part by STFC under Consolidated Grant No. ST/X000680/1.F.Z. is supported by the STFC Consolidated Grant No. ST/X000648/1.
DOI: 10.5281/zenodo.16580109
title: Density of states in Sp(4) gauge theory with Nt=5 and large volumes - Data release

description: The dataset is used as the input to the the analyses presented in the paper Finite-temperature Yang-Mills theories with the density of states method: towards the continuum limit. For more information see the `README.md` file.
description: We would like to thank Stephan J. Huber, David Mateos, and Manuel Reichert for useful discussions. We thank Frederic D. R. Bonnet for help in benchmarking our code.

The work of E.B. and B.L. is supported in part by the EPSRC ExCALIBUR programme ExaTEPP (project EP/X017168/1). The work of E.B. has also been supported by the UKRI Science and Technology Facilities Council (STFC) Research Software Engineering Fellowship EP/V052489/1. E.B., B.L., and M.P. have been supported in part by the STFC Consolidated Grant No. ST/X000648/1. B.L. has been supported in part by the STFC Consolidator Grant No. ST/X00063X/1. B.L. and M.P. have been supported in part by the STFC  Consolidated Grant No. ST/T000813/1.B.L. and M.P. received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program under Grant Agreement No. 813942. D.M. has been supported in part by a studentship awarded by the Data Intensive Centre for Doctoral Training, which is funded by the STFC grant ST/P006779/1.D.V. is supported in part by STFC under Consolidated Grant No. ST/X000680/1.F.Z. is supported by the STFC Consolidated Grant No. ST/X000648/1.
DOI: 10.15468/dl.c68ead
title: Occurrence Download

description: A dataset containing 551 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pipistrellus pygmaeus",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "Country is Spain",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 },
 "DistanceFromCentroidInMeters is greater than or equal to 1000",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015",
 "Month is not null"
 ]
}

 The dataset includes 551 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011136-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/h5uogv
title: nifH gene in KH-11-10 and KH-13-7 cruises

description: This study aims to describe diazotroph community structure in the euphotic zone in the western and eastern subtropical South Pacific
DOI: 10.15468/0ohmqw
title: Shotgun Metagenomic Sequencing of the Arctic Ocean during Winter-Spring Transition

description: One of the main concerns about the Arctic Ocean has been the changing sea ice regime with a reduction in the summer sea ice extent and a shift in dominance from thicker, perennial multiyear ice towards thinner, first-year ice. As the dietary basis of marine food webs and central players of biogeochemical cycles, microbial communities play an irreplaceable role when evaluating the ecological impact of the Arctics thinner ice regime. During the Norwegian young sea Ice cruise 2015 (N-ICE2015), that took place in drifting pack ice north of Svalbard between January-June 2015, seawater was collected, at 5, 20 or 50, 250 m depth in 9th March, 27th April and 16th June, together with physical and biogeochemical data. Through the massively parallel sequencing of environmental DNA (metagenomics) we expect to get a snapshot of the Arctics microbiome structure, key functions and dynamic through the dark-light transition.
DOI: 10.15468/dl.msn9fg
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sarracenia purpurea",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 40 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011137-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/nfv05i
title: Microbial ecology of AOA community in sediment from adjacent waters of Rushan Bay

description: Microbial ecology of AOA community
DOI: 10.15468/q70vwa
title: seawater bacterial community Raw sequence reads

description: We report the sediment derived dissolved organic matter degradation in incubation experiment with the overlying seawater, shifts in microbial community structure during the incubation were investigated. Microbial genomic DNA was extracted from the polycarbonate membranes (microbial cells filtered) and the 16S rRNA gene sequences (v3+v4) were amplified by PCR.We classified the OTUs based on their phylogenetic affiliations and determined their relative proportions on the total number of sequencing reads.
DOI: 10.15468/jhhyyd
title: Marine planktonic ciliates (phylum Ciliophora, subclasses Oligotrichia and Choreotrichia): SSU rDNA

description: This study focuses on the richness and taxonomic composition of ciliate protists in marine plankton of a large temperate estuary (Long Island Sound, USA).
DOI: 10.15468/dd.7b7vk7
title: Dataset generated from Esri tool

description: Derived dataset generated by Esri geoprocessing tool using GBIF API
DOI: 10.15468/dl.vc3re7
title: Occurrence Download

description: A dataset containing 1019 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Agave victoriae-reginae)"
 ]
}

 The dataset includes 1019 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011138-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/hrppiq
title: microbial community composition of marine water and sediment

description: To study the diversity and composition of water and sediment microbial community in seaweed cultivation zone and natural sea zone.
DOI: 10.15468/zimc5b
title: Diversity of denitrifying bacteria in Sanya mangrove sediments

description: This study aims to evalue the diversity of denitrifying bacteria in Sanya mangrove sediments from China.
DOI: 10.15468/dl.shk5jg
title: Occurrence Download

description: A dataset containing 1552 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-61.84615 9.97622,-60.36476 9.97622,-60.36476 11.32512,-61.84615 11.32512,-61.84615 9.97622))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Porites astreoides, Montastraea cavernosa, Siderastrea siderea, Siderastrea radians, Agaricia agaricites, Stephanocoenia intersepta, Manicina areolata, Colpophyllia natans, Pseudodiploria strigosa, Diploria labyrinthiformis, Meandrina meandrites, Eusmilia fastigiata, Dichocoenia stokesii, Porites porites, Porites furcata, Orbicella annularis, Orbicella faveolata, Orbicella franksi, Pseudodiploria clivosa, Isophyllia sinuosa, Isophyllia rigida, Mycetophyllia aliciae, Mycetophyllia ferox, Mycetophyllia lamarckiana, Scolymia cubensis, Scolymia lacera, Agaricia tenuifolia, Agaricia lamarcki, Agaricia humilis, Porites divaricata, Madracis auretenra, Madracis decactis, Porites colonensis, Acropora palmata, Acropora cervicornis, Dendrogyra cylindrus, Meandrina jacksoni, Solenastrea bournoni, Solenastrea hyades, Favia fragum, Agaricia grahamae, Helioseris cucullata, Madracis carmabi, Porites branneri, Oculina diffusa)"
 ]
}

 The dataset includes 1552 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011141-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ucuwg9
title: Occurrence Download

description: A dataset containing 0 records in GBIF matching the query:
SELECT "year", COUNT(*) as occurrence_count 
 FROM occurrence
 WHERE "year" &gt;= 1970 
 AND level0gid = ' OMN '
 AND (kingdom = 'Plantae' OR kingdom = 'Animalia') 
 AND (basisOfRecord = 'OBSERVATION' OR basisOfRecord = 'LIVING_SPECIMEN' OR basisOfRecord = 'MATERIAL_SAMPLE' OR basisOfRecord = 'HUMAN_OBSERVATION' OR basisOfRecord = 'MACHINE_OBSERVATION' OR basisOfRecord = 'OCCURRENCE')
 AND occurrenceStatus = 'PRESENT' 
 AND decimalLongitude IS NOT NULL 
 AND decimalLatitude IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID') 
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') 
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') 
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') 
 GROUP BY "year"
 ORDER BY "year"

 The dataset's 0 records were derived from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011131-250920141307145/datasets/export for details.
DOI: 10.15468/apu8kr
title: Organic matter from melting Arctic sea ice triggers bacterioplankton activity and diversity

description: As Arctic multiyear ice is being replaced with first-year sea ice, a key question pertains to the cycling and fate of the increasingly dominant first-year ice carbon upon its release into the water column during melt. In this study, we experimentally tested the hypothesis that changes in sea ice dissolved organic matter (DOM) fractions affect the response of under-ice microbial communities and, as a corollary, the cycling of sea ice carbon in surface waters.Size-fractionated DOM fractions were isolated from first-year ice, producing three pools of dissolved organic carbon comprising the full DOM spectrum, large exopolymeric substances (EPS &gt; 100 KDa molecular weight), and small EPS (&lt; 100 KDa and &gt; 10 KDa molecular weight). Enrichment experiments with these fractions revealed, over a 216 h period, significant and contrasting changes in prokaryotic abundance and production, substrate utilization rates, and microbial diversity between enrichments. The different DOM fractions differed in terms of molecular composition, elemental ratios and carbohydrate contribution, with the full DOM spectrum showing the highest proportion of carbohydrates and highest number of low-molecular weight unique compounds. Despite an abundance of low-molecular weight compounds in the DOM enrichment, the EPS fractions induced the strongest and fastest response of underice microbial communities, with highest growth rates and substrate utilization for the small EPS fraction. Shifts in microbial diversity were also observed over the course of the experiment, resulting in different community composition between enrichments. Notably, the EPS and DOM enrichments led to a dominance of Colwellia and Psychromonas, respectively.The results support our hypothesis, showing the fundamental role of the composition of the sea ice dissolved organic matter (DOM) pool and its dual impact, through changes in microbial diversity and substrate utilization, on organic matter cycling at the sea-ice interface. These findings have far-reaching consequences in terms of the cycling and export of sea ice associated carbon in the climatically-impacted Arctic and its role in global biogeochemical cycles.
DOI: 10.15468/dl.7swafw
title: Occurrence Download

description: A dataset containing 40764 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (function (name, pos = -1, envir = as.environment(pos), all.names = FALSE, pattern, sorted = TRUE) \n{\n if (!missing(name)) {\n pos &lt;- tryCatch(name, error = function(e) e)\n if (inherits(pos, \"error\")) {\n name &lt;- substitute(name)\n if (!is.character(name)) \n name &lt;- deparse(name)\n warning(gettextf(\"%s converted to character string\", sQuote(name)), domain = NA)\n pos &lt;- name\n }\n }\n all.names &lt;- .Internal(ls(envir, all.names, sorted))\n if (!missing(pattern)) {\n if ((ll &lt;- length(grep(\"[\", pattern, fixed = TRUE))) && ll != length(grep(\"]\", pattern, fixed = TRUE))) {\n if (pattern == \"[\") {\n pattern &lt;- \"\\\\[\"\n warning(\"replaced regular expression pattern '[' by '\\\\\\\\['\")\n }\n else if (length(grep(\"[^\\\\\\\\]\\\\[&lt;-\", pattern))) {\n pattern &lt;- sub(\"\\\\[&lt;-\", \"\\\\\\\\\\\\[&lt;-\", pattern)\n warning(\"replaced '[&lt;-' by '\\\\\\\\[&lt;-' in regular expression pattern\")\n }\n }\n grep(pattern, all.names, value = TRUE)\n }\n else all.names\n}, Bidens pilosa, Ageratina adenophora, Chromolaena odorata, Praxelis clematidea, Leucaena leucocephala, Mimosa diplotricha, Trifolium repens, Oenothera biennis, Malvastrum coromandelianum, Amaranthus blitum, Amaranthus viridis, Opuntia dillenii, Solanum erianthum, Synedrella nodiflora, Sphagneticola trilobata, Tridax procumbens, Calopogonium mucunoides, Euphorbia hypericifolia, Euphorbia peplus, Phyllanthus amarus, Waltheria indica, Sieruela rutidosperma, Mitracarpus hirtus, Coreopsis lanceolata)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Country is one of (China, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 40764 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011140-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4j2kfr
title: Occurrence Download

description: A dataset containing 744 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tecoma capensis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 744 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011142-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mrads3
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-90.48461048511854 20.97300785025126,-89.2094998960936 20.97300785025126,-89.2094998960936 22.248118439276194,-90.48461048511854 22.248118439276194,-90.48461048511854 20.97300785025126))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Calamus bajonado"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011143-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/g4pwpf
title: Depth profile of ancient sediments

description: Recruitment of bacteria from the different depth of sediments
DOI: 10.6084/m9.figshare.30195802
title: Dataset for: Burger disease patients with critical limb ischemia at an academic referral center in Jordan.xlsx

description: This dataset contains de-identified patient-level records for all individuals diagnosed with Buerger disease who presented with critical limb ischemia at King Abdullah University Hospital, Jordan, between January 2015 and January 2024. Data were retrospectively extracted from electronic medical records, then curated into an Excel workbook. Variables include demographics, smoking status and duration, Presence of comorbidities, Rutherford category at diagnosis, laboratory results for C-reactive protein (CRP), limb involvement and arterial distribution, presence of multilevel disease and thrombophlebitis, Presence of lower-limb infection at admission, treatment modality, and outcomes classified as no amputation, minor amputation, or major limb amputation. The primary purpose is to enable reproducibility of analyses of factors associated with amputation risk in Buerger disease. Limitations include the single-center, retrospective design, a modest sample size, missing values for CRP laboratory measures, and incomplete longitudinal follow-up that precluded time-to-event analyses. Ethics approval was obtained, and all data are fully de-identified.
DOI: 10.6084/m9.figshare.30195802.v1
title: Dataset for: Burger disease patients with critical limb ischemia at an academic referral center in Jordan.xlsx

description: This dataset contains de-identified patient-level records for all individuals diagnosed with Buerger disease who presented with critical limb ischemia at King Abdullah University Hospital, Jordan, between January 2015 and January 2024. Data were retrospectively extracted from electronic medical records, then curated into an Excel workbook. Variables include demographics, smoking status and duration, Presence of comorbidities, Rutherford category at diagnosis, laboratory results for C-reactive protein (CRP), limb involvement and arterial distribution, presence of multilevel disease and thrombophlebitis, Presence of lower-limb infection at admission, treatment modality, and outcomes classified as no amputation, minor amputation, or major limb amputation. The primary purpose is to enable reproducibility of analyses of factors associated with amputation risk in Buerger disease. Limitations include the single-center, retrospective design, a modest sample size, missing values for CRP laboratory measures, and incomplete longitudinal follow-up that precluded time-to-event analyses. Ethics approval was obtained, and all data are fully de-identified.
DOI: 10.15468/weh1jr
title: Plankton sample collected from Nanaimo Harbour Targeted Locus (Loci)

description: Nanaimo Harbour, BC, Canada (plankton SSU library 454 sequencing)
DOI: 10.15468/mb6gst
title: KB34 Transcriptome or Gene expression

description: Eubacterial and archaeal community identification in historically contaminated subsurface sediment and community shift during PHC degradation under given experimental conditions. Historically contaminated subsurface sediment was used to monitor hydrocarbon degradation behavoir under sulphate reducing and methanogenic conditions over 450 days. Total RNA was isolated from experimental sets and reverse-transcribed to cDNAs. Phylogenetic marker gene 16S rDNA was amplified with eubacterial and archaeal universal primers and amplicons were sequenced on Roche 454 sequencing platform.
DOI: 10.15468/n24nhs
title: ARMS Jeddah sample Raw sequence reads

description: To assess cryptic benthic diversity in three reefs in the Jeddah region of the Red Sea we undertook a metabarcoding (using 18S rRNA primers) approach to survey the eukaryotes found in Autonomous Reef Monitoring Structures (ARMS)
DOI: 10.15468/dl.5d7zfq
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sarracenia purpurea",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 104 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011144-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/hyihdp
title: Temporal variation in pesticide biodegradation

description: Bacterial and phototrophic sequence reads for seasonal pesticide degradation project.
DOI: 10.15468/dl.h348tv
title: Occurrence Download

description: A dataset listing the 34906 species recorded in GBIF matching the query:
{
 "Country" : [
 "is Uganda"
 ]
}

 The dataset's 34906 records were derived from 928 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011134-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.47fxqr
title: Occurrence Download

description: A dataset containing 544 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "OccurrenceStatus is Present",
 "TaxonKey is Akodon subfuscus Osgood, 1944"
 ]
}

 The dataset includes 544 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068188-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.