cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/phxtv76n5s.3
title: AMBER force field parameters of 160 organic molecules for MD simulations using GROMACS

description: General AMBER force field (GAFF) parameters are provided for 160 organic molecules including drugs, natural products, and steroids, which can be employed without further processing in molecular dynamics (MD) simulations using GROMACS. The parameters were determined based on quantum mechanical (QM) calculations involving geometry optimization at the HF6-31G* level of theory using Gaussian 09. For each molecule a coordinate file of the three-dimensional molecular structure, the topology and the parameter file are provided. The applicability of these parameters was demonstrated by MD simulations for each of these molecules.using Gromacs 2018. All Gaussian 09 and Gromacs 2018 input files are provided too, along with example bash scripts for how to invoke these programs.
DOI: 10.17632/wg3dt3kx8g.1
title: Speaker-internal biases in referential choice remain stable over the adult lifespan

description: Data for "Speaker-internal biases in referential choice remain stable over the adult lifespan"
DOI: 10.17608/k6.auckland.14150036
title: Kiritimati Island Fossil Reef Radiocarbon Ages

description: This dataset contains the radiocarbon ages from coral and shell collected from Kiritimati Island fossil coral reefs
DOI: 10.17608/k6.auckland.14150036.v1
title: Kiritimati Island Fossil Reef Radiocarbon Ages

description: This dataset contains the radiocarbon ages from coral and shell collected from Kiritimati Island fossil coral reefs
DOI: 10.21227/5hxb-d007
title: UBFC-Phys

description: blabla
DOI: 10.25505/fiz.icsd.cc26tv30
title: CSD 2050622: Experimental Crystal Structure Determination

description: Related Article: Jiachen Ma, Ruge Quhe, Zheyu Zhang, Chen Yang, Xiuying Zhang, Jingzhen Li, Lin Xu,Jie Yang, Bowen Shi, Shiqi Liu, Linqiang Xu, Xiaotian Sun, and Jing Lu|2020|ICSD Communication|||
description: Related Article: Jiachen Ma, Ruge Quhe, Zheyu Zhang, Chen Yang, Xiuying Zhang, Jingzhen Li, Lin Xu, Jie Yang, Bowen Shi, Shiqi Liu, Linqiang Xu, Xiaotian Sun, Jing Lu|2021|J.Mater.Chem.A|9|4810|doi:10.1039/D0TA07589B
DOI: 10.5517/ccdc.csd.cc26vzy0
title: CCDC 2051733: Experimental Crystal Structure Determination

description: Related Article: Julian Müller, Gábor Balázs, Manfred Scheer|2021|Chem.Commun.|57|2257|doi:10.1039/D0CC08328C
DOI: 10.5517/ccdc.csd.cc26w015
title: CCDC 2051736: Experimental Crystal Structure Determination

description: Related Article: Julian Müller, Gábor Balázs, Manfred Scheer|2021|Chem.Commun.|57|2257|doi:10.1039/D0CC08328C
DOI: 10.17608/k6.auckland.14150054.v1
title: Kiritimati Island Fossil Reef Elevation and Coordinates

description: This dataset contains coordinate and raw elevation data for fossil reef transects on Kiritimati Island
DOI: 10.17608/k6.auckland.14150054
title: Kiritimati Island Fossil Reef Elevation and Coordinates

description: This dataset contains coordinate and raw elevation data for fossil reef transects on Kiritimati Island
DOI: 10.17632/x2ry7bcm95.2
title: Code for "A NEW METHOD FOR IDENTIFYING THE ROLE OF MARITAL PREFERENCES AT SHAPING MARRIAGE PATTERNS"

description: Naszodi, Anna and Francisco Mendonca (2021) A new method for identifying the role of marital preferences at shaping marriage patterns. Journal of Demographic Economics, 1-27. doi: https://doi.org/10.1017/dem.2021.1 Naszodi and Mendonca (2021) develop a new method for transforming contingency tables. The transformation preserves the Liu-Lu matrix of the table while making the marginal distributions equal to their target marginals. This transformation is essential for counterfactual decompositions where assortativity in marital preferences is assumed to be characterized by the measure proposed by Liu and Lu (2006) for dichotomous assorted trait variables, or by the generalized Liu-Lu matrix (developed by Naszodi and Mendonca for polytomous ordered assorted trait variables). Naszodi and Mendonca (2021) illustrate the application of the new method by a counterfactual decomposition. They decompose changes in the prevalence of homogamy in the US between 1980 and 2010. The uploaded files allow one to replicate all the calculations in the paper and to apply the new method in other empirical settings as well. The method is suitable for analyzing marital sorting along a polytomous ordered trait variables (such as the highest level of educational attainment, or income bracket), but also for analyzing inter-generational mobility. The new method is implemented in Excel, Visual Basic, and R.
DOI: 10.17632/yskfbt8ssk.1
title: Early Stem Cell Aging in the Mature Brain.

description: Stem cell dysfunction drives many age-related disorders. Identifying mechanisms that initially compromise stem cell behavior represent early targets to enhance stem cell function later in life. Here, we pinpoint multiple factors that disrupt neural stem cell (NSC) behavior in the adult hippocampus. Clonal tracing showed that NSCs exhibit asynchronous depletion by identifying short-term (ST-NSC) and long-term NSCs (LT-NSCs). ST-NSC divide rapidly to generate neurons and deplete in the young brain. Meanwhile, multipotent LT-NSCs are maintained for months, but are pushed out of homeostasis by lengthening quiescence. Single cell transcriptome analysis of deep NSC quiescence revealed several hallmarks of molecular aging in the mature brain and identified tyrosine-protein kinase Abl1 as an NSC pro-aging factor. Treatment with the Abl-inhibitor Imatinib increased NSC proliferation without impairing NSC maintenance in the middle-aged brain. Our study indicates that hippocampal NSCs are particularly vulnerable to cellular aging, yet NSC function can be partially restored. Attached are supplementary figures 4-7. S4 is RNA-Seq mapping efficiency summary. S5 are the expression matrices. S6 is differential expression. S7 is associated GO term enrichment.
DOI: 10.17632/y37mz23vyv.3
title: Covid-19 Risk and LifeStyle (Part1-Nutritions)

description: ... We also conducted a somehow big questionnaire survey from more than 11000 Iranian families (resident in more than 1000 different urban cities and rural points inside IRI) and a somehow big-data Covid-19 and Life-Style data-store (with more than 1M data-Records and more than 1G-Items which could be yielded by acquiring semantic entailment rules) was provided from it. This big-data includes records about Life Style effects (including nutrition, water consumption sources, physical exercise, Smoking, Age, Gender, Health and Disease Factors, and many other items) on the status of Covid-19 Infection in families (i.e., residents of a home). Our results strongly suggest that the foods and water-sources which are containing hypomethylating agents are lowering the risk of apparent infection of Covid-19... Here is a subset of that Data, from residents of Tehran and about Nutrition and the risk of getting apparent infection of Covid-19.
DOI: 10.17632/dnyz5jm7d2.1
title: Aquarius EM-APEX data

description: Stalling and Dissipation of a Near-Inertial Wave (NIW) in an Anticyclonic Ocean Eddy: Direct Determination of Group Velocity and Comparison with Theory
DOI: 10.17632/s48xhds5z9.1
title: The characteristics of an archaeological site related to the production of Korean bronze bells through the analysis of slag and soil

description: Fig 1. Bell casting remains found in Korea and Japan: a) archaeological site in Hasachang-dong, Hanam; b) Gameunsa Temple in Gyeongju; c) Bongeopsa Temple in Anseong; d) archaeological site in Yaksa-dong, Ulsan 1; e) archaeological site in Yaksa-dong, Ulsan 2; and f) bell casting remains in Japan Fig 2. a) Location of Seocheon and a map of major cities in South Korea; b) Drawing of the casting workshop site in Singeom-ri, Seocheon. Fig 3. Casting mold found in a workshop at the Singeom-ri, Seocheon archeological site Fig. 4 Bronze slag and soil samples excavated from the archaeological site in Singeom-ri, Seocheon Fig. 5 X-ray diffraction (XRD) results of slag excavated from the Singeom-ri archaeological site (Cu: cuprite, Ca: cassiterite, Q: quartz, Ma: malachite) Fig. 6 a) Metallurgical microscopic image of SC-1 metal prill and tin oxide on the vitrified matrix; b) metallurgical microscopic image of SC-2 metal prill and tin oxide on the vitrified matrix; c) Scanning electron microscope (SEM) image of SC-1 slag with SnO2 crystal (Cs) and bronze prill (Br); d) SEM image of SC-2 slag with acicular tin(IV) oxide (SnO2) crystal (Cs) and bronze prill (Br); and e) Energy dispersive X-ray spectrometry (EDS) mapping image of SC-2 Fig. 7 a) Reduction of a bronze structure observed in SC-3 microscopic metallurgical image; b) α phase and eutectic phase (α+δ) observed in the microscopic metallurgical image of SC-4; c) Scanning electron microscope (SEM) image of SC-3 with observed α and eutectic phases, and chlorine (Cl) detected in the corroded eutectic phase; d) SEM image of SC-4 α and eutectic phases Fig. 8 a) Map of zones according to the lead isotope ratio of galenas in South Korea; b) comparison of lead isotope ratios of slag samples and galenas in South Korea Fig. 9 a) Location of the archaeological site in Singeom-ri, Seocheon, and excavation sites of Korean bronze bells; and b) a comparison of the distribution of lead isotope ratio of slag samples and galenas of bronze bells in South Korea. Table 1 Composition of Korean bronze bells Table 2 Bell casting remains in Korea Table 3 Wavelength dispersive X-ray fluorescence spectrometer (WD-XRF) analysis of slag samples SC-1 and 2 from the archaeological site in Singeom-ri, Seocheon Table 4 Wavelength dispersive X-ray fluorescence spectrometer (WD-XRF) analysis of slag samples SC-3 and 4 from the archaeological site in Singeom-ri, Seocheon Table 5 Energy dispersive X-ray spectrometry (EDS) analysis of SC-3 and SC-4 Table 6 Lead isotope ratio of the slag found at the archaeological site in Singeom-ri, Seocheon Table 7 Analysis of soil samples from bell foundry remains at the archaeological site in Singeom-ri, Seocheon
DOI: 10.17632/dmhfrympsr.1
title: The kaolinite shuttle: Linking the Great Oxidation and Lomagundi events

description: This dataset provides all the data and supplementary data for the paper titled "The kaolinite shuttle: Linking the Great Oxidation and Lomagundi events".
DOI: 10.17632/2mbn54nfz2.1
title: Entrepreneurial intention of sports management students

description: Data set to identify the determinants of the entrepreneurial intent of sport management students.
DOI: 10.7277/28hs-de06
title: Seismic Resilience of Pre-Tensioned Bridge Bents (NEES-2013-1216)

description: &lt;p&gt;&lt;strong&gt;Title:&lt;/strong&gt; Seismic Resilience of Pre-Tensioned Bridge Bents (NEES-2013-1216)&lt;/p&gt; &lt;p&gt;&lt;b&gt;Year Of Curation: &lt;/b&gt;2015&lt;/p&gt; &lt;p&gt;&lt;b&gt;Description: &lt;/b&gt;This research investigates a system to simultaneously achieve three major advances in the design and construction of bridge bents: improved seismic performance, faster on-site construction, and better long-term durability. First, the seismic performance will be addressed through the use of unbonded pre-tensioned columns, with the goal of re-centering the bridge after an earthquake. Second, the faster on-site construction is to be achieved through the use of pre-fabrication, which typically goes hand-in-hand with pre-tensioning. Connection details are critical, but basic configurations for them have already been developed. Third, the long-term durability is to be addressed by the use of high performance materials (hybrid fiber-reinforced concrete (HyFRC), stainless steel bars, and epoxy-coated strands) in key areas. Pilot studies have already been conducted and have shown that the system possesses the desired fundamental characteristics and has the potential to deliver the anticipated benefits. However, key aspects of the system need to be investigated, and numerical models need to be developed to investigate its dynamic performance under a wide variety of conditions. This research is a collaboration among the University of Washington, University of California at Berkeley, and University of Nevada, Reno. The testing of a two-span bridge designed with this new system will be conducted using the George E. Brown, Jr. Network for Earthquake Engineering Simulation (NEES) shake table facility at the University of Nevada, Reno. Data from this project will be archived and made available to the public through the NEES Project Warehouse data repository at http://www.nees.org.&lt;/p&gt; &lt;p&gt;&lt;b&gt;Award: &lt;/b&gt;http://www.nsf.gov/awardsearch/showAward?AWD_ID=1207903&lt;/p&gt; &lt;p&gt;&lt;b&gt;PIs &amp; CoPIs: &lt;/b&gt;John Stanton, Marc Eberhard, David Sanders&lt;/p&gt; &lt;p&gt;&lt;b&gt;Dates: &lt;/b&gt;May 15, 2012 - April 30, 2015&lt;/p&gt; &lt;p&gt;&lt;b&gt;Organizations: &lt;/b&gt;University of California, Berkeley, CA, United States,    University of Nevada-Reno, NV, United States,    University of Washington, WA, United States&lt;/p&gt; &lt;p&gt;&lt;b&gt;Facilities: &lt;/b&gt;University of Washington, WA, United States,    University of Nevada-Reno, NV, United States&lt;/p&gt; &lt;p&gt;&lt;b&gt;Sponsor: &lt;/b&gt;NSF -1207903&lt;/p&gt; &lt;p&gt;&lt;b&gt;Keywords: -- &lt;/b&gt;&lt;/p&gt; &lt;p&gt;&lt;b&gt;Publications: --&lt;/b&gt;&lt;/p&gt; &lt;nb:citations&gt;&lt;/nb:citations&gt;
DOI: 10.17632/fr9g7h6w28.1
title: Is a Refugee Crisis a Housing Crisis? Only if Housing is Unresponsive

description: Data replication materials for the paper: "Is a refugee crisis a housing crisis? Only if housing supply is unresponsive". Journal of Development Economics, Volume 148, 102563. January 2021
DOI: 10.25345/c5rj7h
title: MassIVE MSV000086976 - Succinylome-controlled antibiotic resistance in MRSA - Global proteome
title: A sucC and a sucD mutant from the Nebraska Transposon Mutant Library (NTML, Strain NE569 and NE1770) were found to be susceptible to cefoxitin and oxacillin when other mutations in TCA cycle genes did not affect their resistance to these antibiotics. The SucC strain (Strain NE569) accumulated Succinyl CoA, which is known to result in higher succinylation rate. We compared the proteome of the sucC mutant in exponential and stationary stages to the one of the WT strain JE2. The global proteome of the following strains were analyzed by TMT-labelled proteomics: Early exponential JE2 (3Hrs), Exponential JE2 (4Hrs), Exponential SucC (4Hrs), Stationary JE2 (10Hrs), Stationary SucC (12Hrs). For each condition, the bacterial pellet was collected and washed twice with PBS. The proteins were extracted by bead beating, 1000 ug of proteins were reduced with DTT, alkylated with IAA and digested with 1:50 (trypsin:protein, w:w) for 3 Hr at 37 C. 100ug of peptides were labelled with TMT11Plex reagents. The samples were pooled and enriched for Succinyl-lysine containing peptides using the PTMScan Succinyl-Lysine Motif Enrichment Kit following the supplier's instructions. The flow through was cleaned-up by C18 solid phase extraction and fractionated into 12 fractions as previously described (PMID: 21500348). A sample (5 ul) of 0.1 ug/ul of peptides from each fraction was analyzed by reverse-phase liquid chromatography-tandem mass spectrometry (LC-MS/MS) using a Waters nanoEquity UPLC system coupled with a QExactive HF-X mass spectrometer.
DOI: 10.17632/kdx7bdwbrs.1
title: Give me Your Tired and Your Poor: Impact of a Large-Scale Amnesty Program for Undocumented Refugees

description: Give me Your Tired and Your Poor: Impact of a Large-Scale Amnesty Program for Undocumented Refugees. Journal of Development Economics, Forthcoming.
DOI: 10.17632/f3rcw5rfjz.1
title: The risk of Coronavirus disease 2019 (COVID-19) in patients with bullous pemphigoid and pemphigus: A population-based cohort study

description: How does this article integrate into what was already known Patients with BP and pemphigus do not have an increased risk of COVID-19 infection relative to control individuals. Patients with BP may have an elevated COVID-19-associated mortality. How does it change practice? That is, what does the article mean to the practice of dermatology, and what should you do as a result of having read this article? What should change in the way you practice COVID-19-positive BP patients should be followed and monitored closely. Given that the intake of systemic corticosteroids and immunosuppressive adjuvants did not predict worse COVID-19 outcomes, these drugs should not be ceased during the pandemic.
DOI: 10.17632/9fxgd8wb2j.1
title: Supplementary Data for: Data processing for fennel protein characterization by Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS)

description: In this public repository, the MS spectra raw data files and the mass peak lists associated with the ultra-high-resolution analysis of fennel extracts by Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS) combined with a home-made Matlab search algorithm are reported. Further details can be found in a related repository, named: Data processing for fennel protein characterization by Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS), doi: 10.17632/s354fkt6fp.1
DOI: 10.17632/c3p3dt3tbb.1
title: FH123_raman

description: Raman measurement of zeolites in a breccia (sample FH123) from the Austroalpine Basement
DOI: 10.17632/t95cfwj972.1
title: FH36_dating

description: These datasets contain values for electron microprobe measurements (all values in ppm) and calculated ages. The dataset FH36_dating_old_fig7 was already presented in the paper: Hentschel, F., Janots, E., Trepmann, C. A., Magnin, V., & Lanari, P. (2020). Corona formation around monazite and xenotime during greenschist-facies metamorphism and deformation. European Journal of Mineralogy, 32, 521–544.
DOI: 10.6084/m9.figshare.14150069
title: Geometry Files AJP Submission

description: Geometry Datasets for Animal Models in AJP submission 2021
DOI: 10.6084/m9.figshare.14150057
title: ST40DATA AJP Submssion 2021

description: Data for the AJP submission ST40 dataset
DOI: 10.6084/m9.figshare.14150057.v1
title: ST40DATA AJP Submssion 2021

description: Data for the AJP submission ST40 dataset
DOI: 10.6084/m9.figshare.3761562.v1792
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5281/zenodo.4574572
title: Butterfly: EVALPBMC dataset

description: This dataset is PBMC 1, 10X, from the publication <strong>Ding J, Adiconis X, Simmons SK, Kowalczyk MS, Hession CC, Marjanovic ND, et al. Systematic comparison of single-cell and single-nucleus RNA-sequencing methods. Nature Biotechnology. 2020 Apr 6;1–10.</strong> <strong>This is distributed according to the Creative Commons 4.0 license.</strong> The files are also available in human cell atlas. The reason we put the data here is because we want to be able to download the data from Google Colab, and we found no way to do that in the HCA DCP.
DOI: 10.5281/zenodo.4574571
title: Butterfly: EVALPBMC dataset

description: This dataset is PBMC 1, 10X, from the publication <strong>Ding J, Adiconis X, Simmons SK, Kowalczyk MS, Hession CC, Marjanovic ND, et al. Systematic comparison of single-cell and single-nucleus RNA-sequencing methods. Nature Biotechnology. 2020 Apr 6;1–10.</strong> <strong>This is distributed according to the Creative Commons 4.0 license.</strong> The files are also available in human cell atlas. The reason we put the data here is because we want to be able to download the data from Google Colab, and we found no way to do that in the HCA DCP.
DOI: 10.17632/7zvkg387zs.1
title: Salary, position, experience, height, offensive, and defensive stats of 95 NBA players who played continuously from season 2008-2009 to 2015-2016

description: Dataset of 95 National Basketball Association (NBA) players who played continuously for an extensive period from season 2008-2009 to season 2015-2016. The dataset covers several stats related to salary, position, height, experience, offensive, and defensive activities. Also, it covers the undesirable stats such as personal fouls and turnovers. The purpose of collecting this data is to be used in analyzing the efficiency and productivity growth of NBA players and study their relationship with some external factors such as the salary, position, experience of players.
DOI: 10.17632/6hhb9768j3.1
title: Thuvep compared to Plasmakinectic resection of the prostate in men aged 75 years and older

description: In the last three decades, new energy sources/modalities, mainly bipolar and laser energies, have been introduced to decrease monopolar TURP morbidity. Bipolar TURP (B-TURP) has been shown to reduce blood transfusion and TUR-syndrome compared to monopolar TURP. Among laser procedures, Thulium Laser Vapo-enucleation of the prostate (ThuVEP) was demonstrated to have low perioperative morbidity even in highly comorbid and elderly patients, with an effective and long-term improvement in LUTS and objective voiding parameters. In the present dataset, we gathered comparative data on postoperative complications and functional outcomes of elderly men undergoing B-TURP as compared to ThuVEP in daily practice.
DOI: 10.17632/hkkmjytcm3.1
title: Qi He NWA 6177 lunar olivine gabbro
DOI: 10.17632/6mh8mpnbgv.1
title: Data for: Machine learning-based genetic diagnosis models for hereditary hearing loss by the GJB2, SLC26A4 and MT-RNR1 mutations

description: This is the Supporting Datasets for the manuscript "Machine learning-based genetic diagnosis models for hereditary hearing loss by the GJB2, SLC26A4 and MT-RNR1 mutations" by Luo et al in EBiomedicine . The two data sets were processed sequencing data, of which the Discovery Set was from the medical records and the Validation Set was from the Disabled Persons' Federation. PS: No mutations found were indicated by 0, heterozygous mutations by 1, and homozygous mutations by 2
DOI: 10.5281/zenodo.4574537
title: The 2020 eruption and the large lateral dike emplacement at Taal volcano, Philippines: Insights from radar satellite data

description: ALOS2_A138.zip : ALOS-2 ascending track 138 unwrapped, coherence, and baseline files covering Taal volcano, Philippines from 18 September 2018 to 10 December 2019. ALOS2_D027.zip: ALOS-2 descending track 27 unwrapped, coherence, and baseline files covering Taal volcano, Philippines from 102 December 2018 to 12 January 2020.
DOI: 10.5281/zenodo.4574536
title: The 2020 eruption and the large lateral dike emplacement at Taal volcano, Philippines: Insights from radar satellite data

description: ALOS2_A138.zip : ALOS-2 ascending track 138 unwrapped, coherence, and baseline files covering Taal volcano, Philippines from 18 September 2018 to 10 December 2019. ALOS2_D027.zip: ALOS-2 descending track 27 unwrapped, coherence, and baseline files covering Taal volcano, Philippines from 102 December 2018 to 12 January 2020.
DOI: 10.17632/pcz8n62gh5.1
title: LINF_100015200

description: nuclear transport factor 2; Leishmania infantum
DOI: 10.17632/kpbb74c66f.1
title: LINF_100014600

description: hypothetical protein - conserved; Leishmania infantum
DOI: 10.17632/5fb4tmp9hw.1
title: LINF_100013850

description: Neutral amino acid transporter | LiAAP24 | AAT20.1; Leishmania infantum
DOI: 10.17632/rkvd6kcgv6.1
title: LINF_100013800

description: MRD1; Leishmania infantum