cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14146118
title: Climate exposure metrics for Europe under different SSP-RCP scenarios

description: This dataset contains raster files that represent three climate change metrics at 1 km resolution (ETRS89 Lambert Azimuthal Equal Area (ETRS_LAEA) projection): local, gradient-based, climate velocity (Loarie et al. 2009); distance, analogue-based, climate velocity (Hamann et al. 2015; Brito-Morales et al. 2018); climate change magnitude (Williams & Jackson 2007; Williams et al. 2007). The dataset covers a study area which comprehends the territories of EU 46 extended from Greenland in the west to the Urals in the east, including Turkey and parts of North African countries to cover the entire Mediterranean shoreline.

For each metric, we compiled climate change data based on nine combinations of three climate scenarios (SSP1-2.6, SSP3-7.0, SSP5-8.5) and three Earth System Models (ESMs): GFDL-ESM4, UKESM1-0-LL, and MPI-ESM1-2-HR. We used annual precipitation (pr, bio12) and mean annual temperature (tas, bio1) to represent overall climatic risk. Climatic variables were retrieved from CHELSA V2.1 (Karger et al. 2017, 2021).

The dataset is divided into subfolders for each metric. Each folder contains results for each ESM and their ensemble results for each SSP-RCP scenario. For more information on the methodology and original data please see the accompanying preprint entitled "The accelerating exposure of European protected areas to climate change" (Cimatti et al., 2024, bioRxiv).
DOI: 10.5281/zenodo.15344729
title: The accelerating exposure of European protected areas to climate change

description: This dataset contains raster files that represent three climate change metrics at 1 km resolution (ETRS89 Lambert Azimuthal Equal Area (ETRS_LAEA) projection): local (gradient-based) climate velocity (Loarie et al. 2009); analogue (distance-based) climate velocity (Hamann et al. 2015; Brito-Morales et al. 2018) and climate change magnitude (Williams & Jackson 2007; Williams et al. 2007). The dataset covers a study area which comprehends the territories of EU 46 extended from Greenland in the west to the Urals in the east, including Turkey and parts of North African countries to cover the entire Mediterranean shoreline.

For each metric, we compiled climate change data based on nine combinations of three climate scenarios (SSP1-2.6, SSP3-7.0, SSP5-8.5) and three Earth System Models (ESMs): GFDL-ESM4, UKESM1-0-LL, and MPI-ESM1-2-HR. We used mean annual near-surface (2m) air-temperature (tas, bio1) and the annual precipitation rate (pr,bio12) to represent overall climatic risk. Climatic variables were retrieved from CHELSA V2.1 (Karger et al. 2017, 2021). Unit of measure of local and analog velocities is km/year, while magnitude is adimensional.

The dataset is divided into subfolders for each metric. Each folder contains results for each ESM and their ensemble results for each SSP-RCP scenario. For more information on the methodology and original data please see the paper entitled "The accelerating exposure of European protected areas to climate change" (Cimatti & Mezzanotte et al., 2025, Global Change Biology).This last version of the dataset holds an updated output of the analog velocity, as we significantly increased the search buffer around each focal cell to identify  a climate analog (from 500 km to 1500 km).We also provide example codes (to be repeated for each ESMs/SSPs) to reproduce the final outputs and results of the study (readme file can be found in the RCodes/SCRIPT GCB folder).
DOI: 10.15468/dl.gdtuj6
title: Occurrence Download

description: A dataset containing 38904 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mammal Collection (MHNG-MAMO) of Muséum d'histoire naturelle de la Ville de Genève"
 ]
}

 The dataset includes 38904 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027936-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hytt6b
title: Occurrence Download

description: A dataset containing 255330 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((57.6795 19.44522,100.34717 18.84725,136.19145 18.83279,138.34687 19.26372,138.80689 19.44522,138.80689 63.93852,57.6795 63.93852,57.6795 19.44522))",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Cyperaceae"
 ]
}

 The dataset includes 255330 records from 366 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027929-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29037194
title: Spin-lattice relaxation of NV centers in nanodiamonds adsorbed on conducting and non-conducting surfaces: original data files

description: Data and code from the paper: Benedičič <i>et al., </i>Spin-lattice relaxation of NV centers in nanodiamonds adsorbed on conducting and non-conducting surfaces<i>, </i>https://arxiv.org/abs/2503.04172. Please refer to the paper for more information.Data and code are organized into folders by figure names within the compressed file.File formats:<br>*.csv ... Comma-separated values<br>*.jpg ... Compressed images<br>*.00X ... Nanoscope data file, can be opened with any open-source SPM analysis software<br>The *.csv files contain all the raw data acquired in the experiment as well as some already processed data.<br>They are structured as follows:<br>Files beginning with Rabi/ODMR:<br>Line with varied parameter<br>Line with integrated signal values<br>Line with integrated reference values<br>Line with normalized signal values<br>ALL PARAMETERS<br>List of experimental parameters<br>--- RAW TRACES ---Pairs of lines containing oscilloscope traces, separated by single blank lines.Files beginning with T1:<br>Line with varied parameter<br>Line with integrated signal values without microwaves<br>Line with integrated reference values without microwaves<br>Line with normalized signal values without microwavesLine with integrated signal values with microwaves<br>Line with integrated reference values with microwaves<br>Line with normalized signal values with microwaves<br>Line with a difference between normalized results with and without microwaves<br>ALL PARAMETERS<br>List of experimental parameters<br>--- RAW TRACES ---Quadruples of lines containing oscilloscope traces without and with microwaves, separated by single blank lines.
DOI: 10.5281/zenodo.15394253
title: Triggering dynamic instability in marine ice sheet via surface processes
DOI: 10.5281/zenodo.15394254
title: Triggering dynamic instability in marine ice sheet via surface processes
DOI: 10.15468/dl.tctdvh
title: Occurrence Download

description: A dataset containing 376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Mongolia)",
 "TaxonKey is Betula dahurica Pall."
 ]
}

 The dataset includes 376 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027938-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d4qf9j
title: Occurrence Download

description: A dataset containing 22579 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 PRINTF('%04d-%02d-%02d', "year", "month", "day") yearmonthday,
 GBIF_EEARGCODE(10000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000)) eeacellcode,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.continent = 'EUROPE'
 AND occurrence.hascoordinate = TRUE
 AND occurrence.hasgeospatialissues = FALSE
 AND occurrence."month" IN (1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12)
 AND (occurrence.taxonkey = 5219173 OR occurrence.acceptedtaxonkey = 5219173 OR occurrence.kingdomkey = 5219173 OR occurrence.phylumkey = 5219173 OR occurrence.classkey = 5219173 OR occurrence.orderkey = 5219173 OR occurrence.familykey = 5219173 OR occurrence.genuskey = 5219173 OR occurrence.specieskey = 5219173)
 AND (occurrence."year" &gt;= 2000 AND occurrence."year" &lt;= 2025)
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL AND occurrence."month" IS NOT NULL AND occurrence."day" IS NOT NULL AND occurrence.hascoordinate = TRUE)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 PRINTF('%04d-%02d-%02d', "year", "month", "day"),
 GBIF_EEARGCODE(10000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000))

 The dataset's 22579 records were derived from 234 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027932-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/5vsapx
title: List_of_articles.tab

description: This 4-column tabular file contains 20 scientific articles on the composition of milk oligosaccharides in mammalian species, which make up the HoloOligo corpus. Some of these articles have been used to annotate both the abstract and extracts from the full text, resulting in a total of 30 documents within the corpus. For each article, the first author, year of publication, DOI, and title are linked to the corresponding ID from the annotation tool.
DOI: 10.57745/6rcdvj
title: List_of_articles.tab

description: This 4-column tabular file contains 20 scientific articles on the composition of milk oligosaccharides in mammalian species, which make up the HoloOligo corpus. Some of these articles have been used to annotate both the abstract and extracts from the full text, resulting in a total of 30 documents within the corpus. For each article, the first author, year of publication, DOI, and title are linked to the corresponding ID from the annotation tool.
DOI: 10.57745/9qxhwz
title: FemalePhysiologicalStageThesaurus.tab

description: This 6-column tabular file gathers terms to designate the physiological stage of the female i.e., the number of gestation of females. While "primiparous" and "multiparous" are common terms for parity, we also encounter alternative expressions, such as "Bred for the first time" or references to the specific number of parity (e.g., "x"-parity). Additionally, certain terms specific to porcine species clarify parity distinctions. "Sows" refer to multiparous pigs, while "gilts" are primiparous pigs. In this table, we identify the two physiological stages—primiparous and multiparous—assigning an ID to each, and include their synonyms and specific terms relevant to pigs.
DOI: 10.57745/f33fyf
title: OligosaccharideType-concepts.tab

description: Milk oligosaccharides are sometimes designated using general terms rather than specific names or structures. This 2-column tabular file includes 5 terms that are used to categorize milk oligosaccharides. 
Three of these terms are based on their chemical composition: (i) Neutral milk oligosaccharides: These do not have any sialic acid in their structure. (ii) Fucosylated milk oligosaccharides: These contain one or more fucose units. (iii) Sialylated milk oligosaccharides: They contain one or more sialic acid units. 
The remaining two terms are used to classify milk oligosaccharides according to the linkage between two monosaccharides, Galactose and N-acetyllactosamine : (i) Type I refers to a Galactose β linked via its anomeric carbon to carbon 3 of N-acetylglucosamine forming (Gal(β1-3)GlcNAc). (ii) Type II refers to a Galactose β linked via its anomeric carbon to carbon 4 of N-acetylglucosamine forming (Gal(β1-4)GlcNAc).
DOI: 10.57745/huuwcg
title: Annotation_schema.png

description: This annotation schema depicts the biological complexity of milk oligosaccharide profiles and conceptualizes the associated information. It identifies key entities and defines the relationships between them. Each colored rectangle represents an entity, while rectangles with colored outlines signifiy the relationships. Arrows connect the entities involved in these relationships, with the arrow color matching the outline of the corresponding relation rectangle.
DOI: 10.57745/ppwowz
title: HoloOligo_corpus.zip

description: HoloOligo annotated corpus.
30 documents manually annotated with named entities, entity normalization, binary and n-ary relations. Annotations are provided in the BioNLP-ST format.
DOI: 10.57745/pw6usx
title: SampleThesaurus.tab

description: This thesaurus compiles the two types of samples commonly used in experiments analyzing milk oligosaccharides: milk from a single individual or a combination of milk from multiple individuals. The 7-column table provides the ID for each sample type along with its synonyms.
DOI: 10.57745/qrzmtc
title: MOMethodThesaurus.tab

description: This thesaurus compiles the methodologies used for analyzing milk to identify milk oligosaccharides. A total of 42 different methodologies are included in this 6-column table, which links each methodology to an identifier, abbreviation, synonyms, DOI from the article where the methodology was mentioned, and the corresponding identifier from the Chemical Method Ontology (CHMO). The CHMO is an ontology that catalogs instruments and methods used to collect data and prepare materials in chemical experiments.
DOI: 10.57745/rchfyj
title: LactationStage-concepts.tab

description: During lactation the characteristics of milk change over time. Milk is commonly divided into 3 to 4 types based on the period of lactation, typically referred to as colostrum, tansition milk, mature milk and weaning milk. These terms are specific to the species being studied, as the duration of lactation can vary significantly between species. Therefore, general terms such as "early lactation" may have different meanings depending on the species. This 2-column tabular file provides a list of commonly used terms to designate different periods of lactation.
DOI: 10.15468/dd.n242kh
title: Distribution records of Gymnoscopelus opisthopterus

description: These records of Gymnoscopelus opisthopterus were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.nfcgy2
title: Distribution records of Electrona antarctica

description: These records of Electrona antarctica were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.4vdjgf
title: Distribution records of Gymnoscopelus braueri

description: These records of Gymnoscopelus braueri were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.jesudq
title: Distribution records of Gymnoscopelus nicholsi

description: These records of Gymnoscopelus nicholsi were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.668a29
title: Distribution records of Protomyctophum bolini

description: These records of Protomyctophum bolini were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.amwhau
title: Distribution records of Krefftichthys anderssoni

description: These records of Krefftichthys anderssoni were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.va9n4s
title: Distribution records of Gymnoscopelus bolini

description: These records of Gymnoscopelus bolini were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.cysbkd
title: Distribution records of Lampanyctus achirus

description: These records of Lampanyctus achirus were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dl.ducpky
title: Occurrence Download

description: A dataset containing 1188721 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coccothraustes coccothraustes (Linnaeus, 1758)"
 ]
}

 The dataset includes 1188721 records from 2264 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000177-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j2uk4j
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Microhyla mixtura"
 ]
}

 The dataset includes 182 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027620-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29957374
title: Post-blast trilateration script from Trilateration of blast wave arrival time: An inverse method for determining explosive yield and position

description: A Matlab code for the inverse estimation of equivalent charge yield and position of a free-field explosive from measured blast wave time of arrival using trilateration.
DOI: 10.6084/m9.figshare.29957374.v1
title: Post-blast trilateration script from Trilateration of blast wave arrival time: An inverse method for determining explosive yield and position

description: A Matlab code for the inverse estimation of equivalent charge yield and position of a free-field explosive from measured blast wave time of arrival using trilateration.
DOI: 10.15468/dl.5ff57y
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ceratitis capitata",
 "Country is Angola",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085390-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z6sj8y
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ceratitis capitata",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 33 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085391-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/xa3-rp6-mex
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/55t-t7v-5k6
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/czc-4f1-q1z
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2cy-pzf-9jv
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hs9-55j-xga
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9xb-30b-sb8
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vdj-j4b-m0q
title: Cibicorbis herricki Hadley, 1934

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lsj-8ka-5c5
title: Heterostegina depressa d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ytf-vr1-vvx
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0b2-0z5-60y
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wr8-6cq-ecp
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kfb-0ad-gh7
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ztm-qpc-ss5
title: Uvigerina flintii Cushman, 1923

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/223-xns-57j
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jkr-2ra-6fp
title: Nummulitidae Blainville, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g7a-lpq-e59
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zh8-np9-2zk
title: †Dorothia bulletta (Carsey, 1926)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6c6-bf4-b2y
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rf8-ega-fth
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/80l-wzb-a0g
title: Nummulitidae Blainville, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qn6-q8k-73g
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tn8-p0a-0p2
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0mn-pe2-sda
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/88l-xjx-dt4
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gye-l2r-pqq
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l0m-6lk-yky
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5xx-b6f-ke6
title: †Cythereis ornatissima (Reuss, 1846)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/98w-jwh-l6w
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.germsg
title: Occurrence Download

description: A dataset containing 22394 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Halyomorpha halys",
 "Country is United States of America",
 {
 "not" : {
 "GadmLevel1Gid" : [
 "is USA.50_1;USA.51_1"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than 5000"
 ]
}

 The dataset includes 22394 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023350-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/05c-kmk-cz4
title: †Pseudotaberina Eames in Davies, 1971

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.