cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6225647.v1
title: Development of a systematic method to assess similarity between nanomaterials for human hazard evaluation purposes – lessons learnt

description: Within the EU FP-7 GUIDEnano project, a methodology was developed to systematically quantify the similarity between a nanomaterial (NM) that has been tested in toxicity studies and the NM for which risk needs to be evaluated, for the purpose of extrapolating toxicity data between the two materials. The methodology is a first attempt to use current knowledge on NM property–hazard relationships to develop a series of pragmatic and systematic rules for assessing NM similarity. Moreover, the methodology takes into account the practical feasibility, in that it is based on generally available NM characterization information. In addition to presenting this methodology, the lessons learnt and the challenges faced during its development are reported here. We conclude that there is a large gap between the information that is ideally needed and its application to real cases. The current database on property–hazard relationships is still very limited, which hinders the agreement on the key NM properties constituting the basis of the similarity assessment and the development of associated science-based and unequivocal rules. Currently, one of the most challenging NM properties to systematically assess in terms of similarity between two NMs is surface coating and functionalization, which lacks standardized parameters for description and characterization methodology. Standardization of characterization methods that lead to quantitative, unambiguous, and measurable parameters describing NM properties are necessary in order to build a sufficiently robust property–hazard database that allows for evidence-based refinement of our methodology, or any other attempt to systematically assess the similarity of NMs.
DOI: 10.6084/m9.figshare.6225644
title: Multi-level toxicity assessment of engineered cellulose nanofibrils in <i>Daphnia magna</i>

description: Cellulose nanofibril (CNF)-based materials are increasingly used in industrial and commercial applications. However, the impacts of CNF on aquatic life are poorly understood, and there are concerns regarding their potential toxicity. Using a combination of standard ecotoxicological tests and feeding experiments, we assessed the effects of CNF exposure (0.206–20.6 mg/L) on the feeding (food uptake and gut residence time) and life-history traits (growth and reproduction) in the cladoceran <i>Daphnia magna.</i> No mortality was observed in a 48 h acute exposure at 2060 mg/L. Moreover, a 21-day exposure at low food and moderate CNF levels induced a stimulatory effect on growth, likely driven by increased filtration efficiency, and, possibly, partial assimilation of the CNF by the animals. However, at low food levels and the highest CNF concentrations, growth and reproduction were negatively affected. These responses were linked to caloric restriction caused by dilution of the food source, but not an obstruction of the alimentary canal. Finally, no apparent translocation of CNF past the alimentary canal was detected. We conclude that CNF displays a low toxic potential to filter-feeding organisms and the expected environmental risks are low.
DOI: 10.6084/m9.figshare.6225641
title: Supporting files for Cornet et al. A constrained SSU-rRNA phylogeny reveals the unsequenced diversity of photosynthetic Cyanobacteria (Oxyphotobacteria).

description: This archive contains 5 files:- hand-curated multiple sequence alignment used as a template for aligning all SSU rRNA (16S) sequences- final multiple sequence alignment (raw)- final multiple sequence alignment (post-processed by BMGE) - constraining phylogenomic tree used to constrain the SSU rRNA (16S) tree- final SSU rRNA (16S) maximum likelihood tree<br>
DOI: 10.6084/m9.figshare.6225644.v1
title: Multi-level toxicity assessment of engineered cellulose nanofibrils in <i>Daphnia magna</i>

description: Cellulose nanofibril (CNF)-based materials are increasingly used in industrial and commercial applications. However, the impacts of CNF on aquatic life are poorly understood, and there are concerns regarding their potential toxicity. Using a combination of standard ecotoxicological tests and feeding experiments, we assessed the effects of CNF exposure (0.206–20.6 mg/L) on the feeding (food uptake and gut residence time) and life-history traits (growth and reproduction) in the cladoceran <i>Daphnia magna.</i> No mortality was observed in a 48 h acute exposure at 2060 mg/L. Moreover, a 21-day exposure at low food and moderate CNF levels induced a stimulatory effect on growth, likely driven by increased filtration efficiency, and, possibly, partial assimilation of the CNF by the animals. However, at low food levels and the highest CNF concentrations, growth and reproduction were negatively affected. These responses were linked to caloric restriction caused by dilution of the food source, but not an obstruction of the alimentary canal. Finally, no apparent translocation of CNF past the alimentary canal was detected. We conclude that CNF displays a low toxic potential to filter-feeding organisms and the expected environmental risks are low.
DOI: 10.6084/m9.figshare.6225641.v1
title: Supporting files for Cornet et al. A constrained SSU-rRNA phylogeny reveals the unsequenced diversity of photosynthetic Cyanobacteria (Oxyphotobacteria).

description: Final multiple sequence alignment (2302 sequences x 1233 nt) and corresponding maximum likelihood tree.
DOI: 10.6084/m9.figshare.6225641.v2
title: Supporting files for Cornet et al. A constrained SSU-rRNA phylogeny reveals the unsequenced diversity of photosynthetic Cyanobacteria (Oxyphotobacteria).

description: Final multiple sequence alignment (2302 sequences x 1233 nt) and corresponding maximum likelihood tree.
DOI: 10.6084/m9.figshare.6225641.v3
title: Supporting files for Cornet et al. A constrained SSU-rRNA phylogeny reveals the unsequenced diversity of photosynthetic Cyanobacteria (Oxyphotobacteria).

description: This archive contains 5 files:- hand-curated multiple sequence alignment used as a template for aligning all SSU rRNA (16S) sequences- final multiple sequence alignment (raw)- final multiple sequence alignment (post-processed by BMGE) - constraining phylogenomic tree used to constrain the SSU rRNA (16S) tree- final SSU rRNA (16S) maximum likelihood tree<br>
DOI: 10.6084/m9.figshare.6225641.v5
title: Supporting files for Cornet et al. A constrained SSU-rRNA phylogeny reveals the unsequenced diversity of photosynthetic Cyanobacteria (Oxyphotobacteria).

description: This archive contains 5 files:- hand-curated multiple sequence alignment used as a template for aligning all SSU rRNA (16S) sequences- final multiple sequence alignment (raw)- final multiple sequence alignment (post-processed by BMGE) - constraining phylogenomic tree used to constrain the SSU rRNA (16S) tree- final SSU rRNA (16S) maximum likelihood tree<br>
DOI: 10.6084/m9.figshare.6225641.v4
title: Supporting files for Cornet et al. A constrained SSU-rRNA phylogeny reveals the unsequenced diversity of photosynthetic Cyanobacteria (Oxyphotobacteria).

description: This archive contains 5 files:- hand-curated multiple sequence alignment used as a template for aligning all SSU rRNA (16S) sequences- final multiple sequence alignment (raw)- final multiple sequence alignment (post-processed by BMGE) - constraining phylogenomic tree used to constrain the SSU rRNA (16S) tree- final SSU rRNA (16S) maximum likelihood tree<br>
DOI: 10.6084/m9.figshare.6225617
title: bow shock breakout

description: bow shock breakout<br>
DOI: 10.6084/m9.figshare.6225617.v1
title: bow shock breakout

description: bow shock breakout<br>
DOI: 10.6084/m9.figshare.6225608
title: Tabla 1. Competencias narrativas y estéticas en Javier Ruecas y Fly like a Butterfly

description: Tabla 1 que recoge la transcripción literal de vídeos para la investigación sobre booktubers.
DOI: 10.6084/m9.figshare.6225608.v1
title: Tabla 1. Competencias narrativas y estéticas en Javier Ruecas y Fly like a Butterfly

description: Tabla 1 que recoge la transcripción literal de vídeos para la investigación sobre booktubers.
DOI: 10.6084/m9.figshare.6225590
title: Dataset 3 - All CDSs/tCDSs and data regarding external assemblies used

description: All annotations for all genomes used in this study that were downloaded from NCBI and Phytozome (April 2017).<br>References and download links for the externally-obtained genomic assemblies are in the Excel file.<br><br>
DOI: 10.6084/m9.figshare.6225590.v2
title: Dataset 3 - All CDSs/tCDSs and data regarding external assemblies used

description: All annotations for all genomes used in this study that were downloaded from NCBI and Phytozome (April 2017).<br>References and download links for the externally-obtained genomic assemblies are in the Excel file.<br><br>
DOI: 10.6084/m9.figshare.6225590.v1
title: Supplementary Data 3 - All CDSs/tCDSs and data regarding external assemblies used

description: All annotations for all genomes used in this study that were downloaded from NCBI and Phytozome (April 2017).<br>References and download links for the externally-obtained genomic assemblies are in the Excel file.<br><br>
DOI: 10.6084/m9.figshare.6225584
title: spherical crater

description: spherical crater<br>
DOI: 10.6084/m9.figshare.6225569
title: bow shock breakout

description: bow shock breakout<br>
DOI: 10.6084/m9.figshare.6225584.v1
title: spherical crater

description: spherical crater<br>
DOI: 10.6084/m9.figshare.6225569.v1
title: bow shock breakout

description: bow shock breakout<br>
DOI: 10.6084/m9.figshare.6225563
title: Raw data from Schmitz et al. 2018

description: Raw data from Schmitz et al. 2017.<br>GTFs of merged transcriptomes generated in this study as well as a csv containing the raw values of properties for each of the proteins analysed in the paper
DOI: 10.6084/m9.figshare.12894182
title: Table S.3. Film usage for commercially available film widths; IntelliWrap method.

description: <b>Table </b>S.3<b>.</b> Film usage for commercially available film widths and wrapping parameters resulting in pl=5,..., 16 film layers for IntelliWrap method; the optimal values are marked by bold.
DOI: 10.6084/m9.figshare.12894182.v1
title: Table S.3. Film usage for commercially available film widths; IntelliWrap method.

description: <b>Table </b>S.3<b>.</b> Film usage for commercially available film widths and wrapping parameters resulting in pl=5,..., 16 film layers for IntelliWrap method; the optimal values are marked by bold.
DOI: 10.6084/m9.figshare.6225377
title: dada_2_amplicon_ex_workflow.tar.gz

description: data for tutorial found here: https://astrobiomike.github.io/amplicon/dada2_workflow_ex
DOI: 10.6084/m9.figshare.6225377.v1
title: dada_2_amplicon_ex_workflow.tar.gz

description: data for tutorial found here: https://astrobiomike.github.io/amplicon/dada2_workflow_ex
DOI: 10.6084/m9.figshare.6225278
title: Additional file 8: of Near full-length 16S rRNA gene next-generation sequencing revealed Asaia as a common midgut bacterium of wild and domesticated Queensland fruit fly larvae

description: Amount of amplified DNA. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6225278.v1
title: Additional file 8: of Near full-length 16S rRNA gene next-generation sequencing revealed Asaia as a common midgut bacterium of wild and domesticated Queensland fruit fly larvae

description: Amount of amplified DNA. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6225275
title: Additional file 7: of Near full-length 16S rRNA gene next-generation sequencing revealed Asaia as a common midgut bacterium of wild and domesticated Queensland fruit fly larvae

description: Representative OTUs. (FASTA 54 kb)
DOI: 10.6084/m9.figshare.6225275.v1
title: Additional file 7: of Near full-length 16S rRNA gene next-generation sequencing revealed Asaia as a common midgut bacterium of wild and domesticated Queensland fruit fly larvae

description: Representative OTUs. (FASTA 54 kb)
DOI: 10.6084/m9.figshare.6225272
title: Additional file 6: of Near full-length 16S rRNA gene next-generation sequencing revealed Asaia as a common midgut bacterium of wild and domesticated Queensland fruit fly larvae

description: Mapping3. (TXT 3 kb)
DOI: 10.6084/m9.figshare.6225272.v1
title: Additional file 6: of Near full-length 16S rRNA gene next-generation sequencing revealed Asaia as a common midgut bacterium of wild and domesticated Queensland fruit fly larvae

description: Mapping3. (TXT 3 kb)
DOI: 10.6084/m9.figshare.6225269
title: Additional file 5: of Near full-length 16S rRNA gene next-generation sequencing revealed Asaia as a common midgut bacterium of wild and domesticated Queensland fruit fly larvae

description: Mapping2. (TXT 3 kb)
DOI: 10.6084/m9.figshare.6225269.v1
title: Additional file 5: of Near full-length 16S rRNA gene next-generation sequencing revealed Asaia as a common midgut bacterium of wild and domesticated Queensland fruit fly larvae

description: Mapping2. (TXT 3 kb)
DOI: 10.6084/m9.figshare.6225266
title: Additional file 4: of Near full-length 16S rRNA gene next-generation sequencing revealed Asaia as a common midgut bacterium of wild and domesticated Queensland fruit fly larvae

description: Scripts and parameters. (TXT 7 kb)
DOI: 10.6084/m9.figshare.6225266.v1
title: Additional file 4: of Near full-length 16S rRNA gene next-generation sequencing revealed Asaia as a common midgut bacterium of wild and domesticated Queensland fruit fly larvae

description: Scripts and parameters. (TXT 7 kb)
DOI: 10.6084/m9.figshare.6225248
title: Additional file 11: of Near full-length 16S rRNA gene next-generation sequencing revealed Asaia as a common midgut bacterium of wild and domesticated Queensland fruit fly larvae

description: OTU table. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.6225248.v1
title: Additional file 11: of Near full-length 16S rRNA gene next-generation sequencing revealed Asaia as a common midgut bacterium of wild and domesticated Queensland fruit fly larvae

description: OTU table. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.6225188
title: Test result 2-the data of gas concentration variation in gas hole during gas injection-9,11,13.xls

description: Test result 2-the data of gas concentration variation in gas hole during gas injection-9,11,13.
DOI: 10.6084/m9.figshare.6225188.v1
title: Test result 2-the data of gas concentration variation in gas hole during gas injection-9,11,13.xls

description: Test result 2-the data of gas concentration variation in gas hole during gas injection-9,11,13.
DOI: 10.6084/m9.figshare.6225185
title: Test result 1-the data of gas concentration variation in gas hole during gas injection-2,4,6.xls

description: Test result 1-the data of gas concentration variation in gas hole during gas injection-2,4,6
DOI: 10.6084/m9.figshare.6225182
title: Fig.3. Plots of content variation of gas at 0.4m in vertical direction of gas injection-negative pressure.opj

description: Plots of content variation of gas at 0.4m in vertical direction of gas injection-negative pressure.opj
DOI: 10.6084/m9.figshare.6225179
title: Fig.3. Plots of content variation of gas at 0.4m in vertical direction of gas injection-gas injection pressure.opj

description: Plots of content variation of gas at 0.4m in vertical direction of gas injection-gas injection pressure.
DOI: 10.6084/m9.figshare.6225179.v1
title: Fig.3. Plots of content variation of gas at 0.4m in vertical direction of gas injection-gas injection pressure.opj

description: Plots of content variation of gas at 0.4m in vertical direction of gas injection-gas injection pressure.
DOI: 10.6084/m9.figshare.6225176
title: Fig.2. Plots of content variation of gas at 0.8m in horizontal direction of gas injection-negative pressure.opj

description: Plots of content variation of gas at 0.8m in horizontal direction of gas injection-negative pressure
DOI: 10.6084/m9.figshare.6225173
title: Fig.2. Plots of content variation of gas at 0.8m in horizontal direction of gas injection-gas injection pressure.opj

description: Plots of content variation of gas at 0.8m in horizontal direction of gas injection-gas injection pressure.
DOI: 10.6084/m9.figshare.6225173.v1
title: Fig.2. Plots of content variation of gas at 0.8m in horizontal direction of gas injection-gas injection pressure.opj

description: Plots of content variation of gas at 0.8m in horizontal direction of gas injection-gas injection pressure.
DOI: 10.6084/m9.figshare.6225167
title: Experimental data2-gas injection pressure.xls

description: Experimental data2-gas injection pressure
DOI: 10.6084/m9.figshare.6225167.v1
title: Experimental data2-gas injection pressure.xls

description: Experimental data2-gas injection pressure
DOI: 10.6084/m9.figshare.6225164
title: Experimental data1-negative pressure.xls

description: Experimental data1-negative pressure
DOI: 10.6084/m9.figshare.6225158
title: Sampling of invertebrates associated with macrophytes: a review

description: Results of a systematic search of articles developed in Brazil and published in Google Scholar and Scielo (did in Portuguese and in English, with invertebrates OR macrophytes/phytophilous/Brazil as keywords) involving studies about invertebrates associated with macrophytes in Brazilian ecosystems. We synthetized the results related to the sampling method, the unit used to express the quantitative values of the fauna associated, the sampler dimension and mesh size, the habitat where the work was developed and the macrophyte species and fauna groups involved in each work. The search showed that there are studies using samplers constructed with different materials and with varying mesh sizes and dimensions. DW- dry weight, WW- wet weight.<br>
DOI: 10.6084/m9.figshare.6225164.v1
title: Experimental data1-negative pressure.xls

description: Experimental data1-negative pressure
DOI: 10.6084/m9.figshare.6225158.v1
title: Sampling of invertebrates associated with macrophytes: a review

description: Results of a systematic search of articles developed in Brazil and published in Google Scholar and Scielo (did in Portuguese and in English, with invertebrates OR macrophytes/phytophilous/Brazil as keywords) involving studies about invertebrates associated with macrophytes in Brazilian ecosystems. We synthetized the results related to the sampling method, the unit used to express the quantitative values of the fauna associated, the sampler dimension and mesh size, the habitat where the work was developed and the macrophyte species and fauna groups involved in each work. The search showed that there are studies using samplers constructed with different materials and with varying mesh sizes and dimensions. DW- dry weight, WW- wet weight.<br>
DOI: 10.5281/zenodo.4008021
title: Dataset for A Synchronous Spin-Exchange Optically Pumped NMR-Gyroscope

description: All data presented in the manuscript "A Synchronous Spin-Exchange Optically Pumped NMR-Gyroscope." Each table in the file includes all data for one figure in the manuscript.
description: This research was funded by the National Science Foundation grant numbers PHY-1607439 and PHY-1912543 and Northrop Grumman Mission Systems' University Research Program.
DOI: 10.6084/m9.figshare.6225149
title: cylindrical impact

description: cylinder impact<br>
DOI: 10.6084/m9.figshare.6225149.v1
title: cylindrical impact

description: cylinder impact<br>
DOI: 10.5281/zenodo.4008020
title: Dataset for A Synchronous Spin-Exchange Optically Pumped NMR-Gyroscope

description: All data presented in the manuscript "A Synchronous Spin-Exchange Optically Pumped NMR-Gyroscope." Each table in the file includes all data for one figure in the manuscript.
description: This research was funded by the National Science Foundation grant numbers PHY-1607439 and PHY-1912543 and Northrop Grumman Mission Systems' University Research Program.
DOI: 10.6084/m9.figshare.6225143
title: Dataset for: Varying the rate of intravenous cocaine infusion influences the temporal dynamics of both drug and dopamine concentrations in the striatum

description: The faster drugs of abuse reach the brain, the greater is the risk of addiction. Even small differences in the rate of drug delivery can influence outcome. Infusing cocaine intravenously over 5 versus 90-100 seconds promotes sensitization to the psychomotor and incentive motivational effects of the drug and preferentially recruits mesocorticolimbic regions. It remains unclear whether these effects are due to differences in how fast and/or how much drug reaches the brain. Here, we predicted that varying the rate of intravenous cocaine infusion between 5-90 seconds produces different rates of rise of brain drug concentrations, while producing similar peak concentrations. Freely-moving male Wistar rats received acute intravenous cocaine infusions (2.0 mg/kg/infusion) over 5, 45 and 90 seconds. We measured cocaine concentrations in the dorsal striatum using rapid-sampling microdialysis (1 sample/minute) and high-performance liquid chromatography-tandem mass spectrometry. We also measured extracellular concentrations of dopamine and other neurochemicals. Regardless of infusion rate, acute cocaine did not change concentrations of non-dopaminergic neurochemicals. Infusion rate did not significantly influence peak concentrations of cocaine or dopamine, but concentrations increased faster following 5-second infusions. We also assessed psychomotor activity as a function of cocaine infusion rate. Infusion rate did not significantly influence total locomotion, but locomotion increased earlier following 5-second infusions. Thus, small differences in the rate of cocaine delivery influence both the rate of rise of drug and dopamine concentrations and psychomotor activity. A faster rate of rise of drug and dopamine concentrations might be an important issue in making rapidly delivered cocaine more addictive.
DOI: 10.6084/m9.figshare.6225143.v1
title: Dataset for: Varying the rate of intravenous cocaine infusion influences the temporal dynamics of both drug and dopamine concentrations in the striatum

description: The faster drugs of abuse reach the brain, the greater is the risk of addiction. Even small differences in the rate of drug delivery can influence outcome. Infusing cocaine intravenously over 5 versus 90-100 seconds promotes sensitization to the psychomotor and incentive motivational effects of the drug and preferentially recruits mesocorticolimbic regions. It remains unclear whether these effects are due to differences in how fast and/or how much drug reaches the brain. Here, we predicted that varying the rate of intravenous cocaine infusion between 5-90 seconds produces different rates of rise of brain drug concentrations, while producing similar peak concentrations. Freely-moving male Wistar rats received acute intravenous cocaine infusions (2.0 mg/kg/infusion) over 5, 45 and 90 seconds. We measured cocaine concentrations in the dorsal striatum using rapid-sampling microdialysis (1 sample/minute) and high-performance liquid chromatography-tandem mass spectrometry. We also measured extracellular concentrations of dopamine and other neurochemicals. Regardless of infusion rate, acute cocaine did not change concentrations of non-dopaminergic neurochemicals. Infusion rate did not significantly influence peak concentrations of cocaine or dopamine, but concentrations increased faster following 5-second infusions. We also assessed psychomotor activity as a function of cocaine infusion rate. Infusion rate did not significantly influence total locomotion, but locomotion increased earlier following 5-second infusions. Thus, small differences in the rate of cocaine delivery influence both the rate of rise of drug and dopamine concentrations and psychomotor activity. A faster rate of rise of drug and dopamine concentrations might be an important issue in making rapidly delivered cocaine more addictive.
DOI: 10.6084/m9.figshare.6225101
title: Dataset COMPAS-Colombia (Focus Groups)

description: This database provides the quantitative evaluation of the project aimed at adapting COMPAS, a Spanish evidence-based sexual health promotion program, to adolescents in Colombia