cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.wmb991
title: Occurrence Download

description: A dataset containing 2005 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Desmodus rotundus (E.Geoffroy, 1810)",
 "Country is Mexico",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 2005 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004414-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjg4b4
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euonymus attenuatus Wall."
 ]
}

 The dataset includes 8 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008249-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5pbdqh
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Wisteria scale (Eulecanium excrescens) records acquired by the Royal Horticultural Society"
 ]
}

 The dataset includes 53 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004414-150811131857512/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bau839
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Delosperma lebomboense (L.Bolus) Lavis"
 ]
}

 The dataset includes 43 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001937-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.paq2dr
title: Occurrence Download

description: A dataset containing 1183 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mabuya unimarginata Cope, 1862"
 ]
}

 The dataset includes 1183 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004414-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ts576n
title: Occurrence Download

description: A dataset containing 132 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen"
 ]
 },
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Paeonia lactiflora Pall."
 ]
}

 The dataset includes 132 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008248-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eibchf
title: Occurrence Download

description: A dataset containing 602313 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Somateria mollissima (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 602313 records from 173 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004414-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.21340523.v1
title: Additional file 2 of A 9‑gene expression signature to predict stage development in resectable stomach adenocarcinoma

description: Additional file 2: Table S2. Gene expression set and clinical information of valid cases with clear stage and lymph sufficient lymph nodes retrieval in TCGA (n = 159) and training-validation (GSE62254, n = 262) before outliers removal; And test set2 (GSE15459, n = 192) with expression and clinical information.
DOI: 10.6084/m9.figshare.17149731
title: Additional file 9 of Full-length transcriptomic identification of R2R3-MYB family genes related to secondary cell wall development in Cunninghamia lanceolata (Chinese fir)

description: Additional file 9: Data S3. Quantification Cq results of 9 ClMYB genes in qRT-PCR.
DOI: 10.6084/m9.figshare.17149722.v1
title: Additional file 6 of Full-length transcriptomic identification of R2R3-MYB family genes related to secondary cell wall development in Cunninghamia lanceolata (Chinese fir)

description: Additional file 6: Table S3. FPKM values of 52 ClMYB genes in different organs or tissues.
DOI: 10.6084/m9.figshare.17149725.v1
title: Additional file 7 of Full-length transcriptomic identification of R2R3-MYB family genes related to secondary cell wall development in Cunninghamia lanceolata (Chinese fir)

description: Additional file 7: Data S1. Descriptions and sequence logo plots of motifs in ClMYB proteins.
DOI: 10.6084/m9.figshare.17149731.v1
title: Additional file 9 of Full-length transcriptomic identification of R2R3-MYB family genes related to secondary cell wall development in Cunninghamia lanceolata (Chinese fir)

description: Additional file 9: Data S3. Quantification Cq results of 9 ClMYB genes in qRT-PCR.
DOI: 10.6084/m9.figshare.17149728.v1
title: Additional file 8 of Full-length transcriptomic identification of R2R3-MYB family genes related to secondary cell wall development in Cunninghamia lanceolata (Chinese fir)

description: Additional file 8: Data S2. Tracheid wall thickness of different samples.
DOI: 10.6084/m9.figshare.14528535.v1
title: MicroRNA-29b/29c targeting CTRP6 influences porcine adipogenesis via the AKT/PKA/MAPK Signalling pathway

description: Porcine fat deposition is an important economic trait of pig breeds, and understanding the gene regulatory network in adipocytes is essential for modern pig breeding. In a previous study, we demonstrated that miR-29a negatively regulates the differentiation of porcine adipocytes. In this study, we investigated the roles of miR-29b/c in porcine adipocytes and the underlying mechanisms. Using EdU staining and the CCK-8 assay, we observed that transfection with the miR-29b/c agomir promoted the proliferation of porcine intramuscular (IM) and subcutaneous (SC) adipocytes by altering the expression of cell-cycle-related genes. According to the results of oil red O staining and western blot analysis, transfection with the miR-29b/c agomir suppressed the differentiation of porcine SC and IM adipocytes via the AKT/PKA/MAPK signalling pathway. Furthermore, we proved that miR-29b/c regulates porcine adipocytes by directly targeting the 3ʹ-untranslated region (3ʹUTR) of CTRP6 using a dual-luciferase reporter assay. Finally, co-transfection with miR-29b/c and CTRP6 partially restored the changes of phenotype and gene expression induced by miR-29b/c overexpression in 3T3-L1 adipocytes. Taken together, our data demonstrate that both miR-29b and miR-29 c negatively regulate porcine adipogenesis by targeting CTRP6, which furthers our understanding of the gene network that regulates fat deposition in pigs.
DOI: 10.6084/m9.figshare.15060106
title: Effects of thermal radiation on near-limit flame spread in a low convective microgravity environment

description: A numerical study is conducted to investigate the effects of thermal radiation on flame spread phenomenon close to limiting oxygen conditions in a low convective spacecraft environment. To understand the role of radiative heat loss from the flame, a set of simulations is performed where gas radiation is completely suppressed. The results show that radiation exerts a dual influence on flame spread rate depending on oxygen concentration. If there is more radiative heat loss from the flame, the limiting oxygen concentration increases, and the size of the flamelet decreases. It was observed that in the absence of gas radiation, oscillating near-limit flamelets stabilise and merge into a single flame. Further, the effects of surface radiation were studied by varying emissivity of the solid fuel and it was noted that a more emissive fuel is more susceptible to the formation of flamelets.
DOI: 10.6084/m9.figshare.17149719.v1
title: Additional file 5 of Full-length transcriptomic identification of R2R3-MYB family genes related to secondary cell wall development in Cunninghamia lanceolata (Chinese fir)

description: Additional file 5: Table S2. Physicochemical properties and protein-coding sequences of ClMYB transcription factors.
DOI: 10.6084/m9.figshare.12955468
title: Additional file 5 of Differences in midgut transcriptomes between resistant and susceptible strains of Chilo suppressalis to Cry1C toxin

description: Additional file 5:. GO enrichment of DEGs.
DOI: 10.6084/m9.figshare.17149722
title: Additional file 6 of Full-length transcriptomic identification of R2R3-MYB family genes related to secondary cell wall development in Cunninghamia lanceolata (Chinese fir)

description: Additional file 6: Table S3. FPKM values of 52 ClMYB genes in different organs or tissues.
DOI: 10.6084/m9.figshare.12955474
title: Additional file 7 of Differences in midgut transcriptomes between resistant and susceptible strains of Chilo suppressalis to Cry1C toxin

description: Additional file 7:. The sequences of twelve unigenes selected for qRT-PCR.
DOI: 10.6084/m9.figshare.13479780.v1
title: A Bayesian State-Space Approach to Mapping Directional Brain Networks

description: The human brain is a directional network system of brain regions involving directional connectivity. Seizures are a directional network phenomenon as abnormal neuronal activities start from a seizure onset zone (SOZ) and propagate to otherwise healthy regions. To localize the SOZ of an epileptic patient, clinicians use intracranial EEG (iEEG) to record the patient’s intracranial brain activity in many small regions. iEEG data are high-dimensional multivariate time series. We build a state-space multivariate autoregression (SSMAR) for iEEG data to model the underlying directional brain network. To produce scientifically interpretable network results, we incorporate into the SSMAR the scientific knowledge that the underlying brain network tends to have a cluster structure. Specifically, we assign to the SSMAR parameters a stochastic-blockmodel-motivated prior, which reflects the cluster structure. We develop a Bayesian framework to estimate the SSMAR, infer directional connections, and identify clusters for the unobserved network edges. The new method is robust to violations of model assumptions and outperforms existing network methods. By applying the new method to an epileptic patient’s iEEG data, we reveal seizure initiation and propagation in the patient’s directional brain network and discover a unique directional connectivity property of the SOZ. Overall, the network results obtained in this study bring new insights into epileptic patients’ normal and abnormal epileptic brain mechanisms and have the potential to assist neurologists and clinicians in localizing the SOZ—a long-standing research focus in epilepsy diagnosis and treatment.
DOI: 10.6084/m9.figshare.13487421
title: Supplementary table.docx

description: Summary
of variables associated with anxiety and depression
DOI: 10.6084/m9.figshare.12955477
title: Additional file 8 of Differences in midgut transcriptomes between resistant and susceptible strains of Chilo suppressalis to Cry1C toxin

description: Additional file 8:. Primer sequences for qRT-PCR of twelve selected unigenes annotated as potential Cry toxin receptors.
DOI: 10.6084/m9.figshare.12955477.v1
title: Additional file 8 of Differences in midgut transcriptomes between resistant and susceptible strains of Chilo suppressalis to Cry1C toxin

description: Additional file 8:. Primer sequences for qRT-PCR of twelve selected unigenes annotated as potential Cry toxin receptors.
DOI: 10.6084/m9.figshare.8244554
title: Associations among Socioeconomic Factors, Lag Time, and High-Risk Histopathologic Features in Eyes Primarily Enucleated for Retinoblastoma

description: <b>Purpose/Aim</b>: To determine the associations among socioeconomic factors, delay in management, and high-risk histopathologic features in eyes primarily enucleated for retinoblastoma. <b>Materials and Methods</b>: A single-site survey was conducted from January 2016 through January 2018. Eyes primarily enucleated for unilateral retinoblastoma were reviewed for the presence of high-risk histopathologic features. Information on clinical characteristics, socioeconomic factors, and lag time were collected during hospitalization. <b>Results</b>: Of the 138 children analyzed, 60 (43.5%) carried high-risk histopathologic features. Compared to children with a standard risk, those with a high risk had a longer median lag time before treatment (21.5 vs 15.0 days, <i>P</i> = .007), but their overall lag time (54.0 vs 50.0 days, <i>P</i> = .062) and delay in the initial visit (7.0 vs 10.0 days, <i>P</i> = .782) were comparable. Logistic regression analysis showed that children with a lag time ≥ 30 days were at a significantly higher risk of extraocular invasion (odds ratio [OR] = 2.38 and 95% confidence interval [CI] = 1.08–5.37 for treatment delay; OR = 2.12 and 95% CI = 1.01–4.62 for overall delay). Neither high-risk histopathologic features nor lag time was associated with any demographic or major socioeconomic factors, including sex, age at diagnosis or enucleation, ethnicity, household income, parents’ education level, medical insurance coverage, and left-behind status. <b>Conclusions</b>: For children with advanced unilateral retinoblastoma, there is no statistical difference in overall lag time between standard and high-risk groups. Major socioeconomic parameters have little impact on the delay and histopathologic outcomes, thus implying that children with varied socioeconomic status may be at a similar risk of advanced tumor invasion.
DOI: 10.6084/m9.figshare.8244554.v2
title: Associations among Socioeconomic Factors, Lag Time, and High-Risk Histopathologic Features in Eyes Primarily Enucleated for Retinoblastoma

description: <b>Purpose/Aim</b>: To determine the associations among socioeconomic factors, delay in management, and high-risk histopathologic features in eyes primarily enucleated for retinoblastoma. <b>Materials and Methods</b>: A single-site survey was conducted from January 2016 through January 2018. Eyes primarily enucleated for unilateral retinoblastoma were reviewed for the presence of high-risk histopathologic features. Information on clinical characteristics, socioeconomic factors, and lag time were collected during hospitalization. <b>Results</b>: Of the 138 children analyzed, 60 (43.5%) carried high-risk histopathologic features. Compared to children with a standard risk, those with a high risk had a longer median lag time before treatment (21.5 vs 15.0 days, <i>P</i> = .007), but their overall lag time (54.0 vs 50.0 days, <i>P</i> = .062) and delay in the initial visit (7.0 vs 10.0 days, <i>P</i> = .782) were comparable. Logistic regression analysis showed that children with a lag time ≥ 30 days were at a significantly higher risk of extraocular invasion (odds ratio [OR] = 2.38 and 95% confidence interval [CI] = 1.08–5.37 for treatment delay; OR = 2.12 and 95% CI = 1.01–4.62 for overall delay). Neither high-risk histopathologic features nor lag time was associated with any demographic or major socioeconomic factors, including sex, age at diagnosis or enucleation, ethnicity, household income, parents’ education level, medical insurance coverage, and left-behind status. <b>Conclusions</b>: For children with advanced unilateral retinoblastoma, there is no statistical difference in overall lag time between standard and high-risk groups. Major socioeconomic parameters have little impact on the delay and histopathologic outcomes, thus implying that children with varied socioeconomic status may be at a similar risk of advanced tumor invasion.
DOI: 10.6084/m9.figshare.21340526
title: Additional file 3 of A 9‑gene expression signature to predict stage development in resectable stomach adenocarcinoma

description: Additional file 3: Table S3. Detailed information of the 22 overlapped DEGs.
DOI: 10.6084/m9.figshare.21340526.v1
title: Additional file 3 of A 9‑gene expression signature to predict stage development in resectable stomach adenocarcinoma

description: Additional file 3: Table S3. Detailed information of the 22 overlapped DEGs.
DOI: 10.6084/m9.figshare.25243276
title: High-performance concrete mixture

description: The dataset includes a total of 1,030 concrete sample records from 17 concrete strength test laboratories and cover nine attributes, eight of which are input factors and one of which is an output factor.
DOI: 10.6084/m9.figshare.12955667.v1
title: Additional file 4 of DNA methylation mediates the effect of cocaine use on HIV severity

description: Additional file 4.
DOI: 10.6084/m9.figshare.25250875
title: Eingabe-Daten-Evaluierung

description: Contains the evaluation of the input data experiments and the experiments itself
DOI: 10.6084/m9.figshare.25250875.v2
title: Eingabe-Daten-Evaluierung

description: Contains the evaluation of the input data experiments and the experiments itself
DOI: 10.6084/m9.figshare.25250875.v1
title: Eingabe-Daten-Evaluierung

description: Contains the evaluation of the input data experiments
DOI: 10.6084/m9.figshare.20295613.v1
title: Additional file 1 of A novel nitidine chloride nanoparticle overcomes the stemness of CD133+EPCAM+ Huh7 hepatocellular carcinoma cells for liver cancer therapy

description: Additional file 1.
DOI: 10.6084/m9.figshare.12955667
title: Additional file 4 of DNA methylation mediates the effect of cocaine use on HIV severity

description: Additional file 4.
DOI: 10.25345/c5qz22t9c
title: MassIVE MSV000094129 - Isolation and characterization of persisters of the pathogenic microorganism Staphylococcus aureus
title: Staphylococcus aureus is a notorious pathogen responsible for significant morbidity and mortality in 18 both human society and animal husbandry. The presence of S. aureus persisters is also one of the leading 19 causes of recurrent and chronic diseases. Persisters are a subset of growth-arrested bacteria within a 20 susceptible bacterial population that are able to tolerate antibiotic treatment and resuscitate after stress 21 removal. Consequently, investigating their formation and characteristics is of crucial importance to 22 provide mechanism-based options for their eradication. However, one challenge in mechanistic research 23 on persisters is the enrichment of pure persisters. In this work, we validated a proposed method to isolate 24 persisters from vancomycin and enrofloxacin generated persistent populations. With this, we analyzed 25 the proteome profile of pure persisters and revealed the distinct mechanisms associated with vancomycin 26 and enrofloxacin induced persisters. Furthermore, morphological and metabolic characterizations were 27 performed, indicating further differences between these two persister populations. Finally, we assessed 28 the effect of ATP repression, protein synthesis inhibition and reactive oxygen species (ROS) level on 29 persister formation. In conclusion, this work provides a comprehensive understanding of S. aureus 30 vancomycin and enrofloxacin induced persisters at the molecular, single cell and population levels, 31 facilitating a better mechanistic understanding of persisters and the development of effective strategies 32 to combat them.
DOI: 10.6084/m9.figshare.12955664.v1
title: Additional file 3 of DNA methylation mediates the effect of cocaine use on HIV severity

description: Additional file 3: Table S1. Epigenome-wide association analysis on persistant cocaine use (p&lt;0.001). Table S2. Epigenome-wide association analysis on HIV severity (p&lt;0.001). Table S3. Epigenome-wide association between candidate CpG sites and other substance use. Table S4. SNP instruments for two-step epigenetic mendelian randomization. Table S5. Mendelian randomization on cocaine use affecting six cell type proportions in blood. Table 6. Gene ontology(GO) pathway enrichment analysis and joint mediation effect.
DOI: 10.6084/m9.figshare.12955664
title: Additional file 3 of DNA methylation mediates the effect of cocaine use on HIV severity

description: Additional file 3: Table S1. Epigenome-wide association analysis on persistant cocaine use (p&lt;0.001). Table S2. Epigenome-wide association analysis on HIV severity (p&lt;0.001). Table S3. Epigenome-wide association between candidate CpG sites and other substance use. Table S4. SNP instruments for two-step epigenetic mendelian randomization. Table S5. Mendelian randomization on cocaine use affecting six cell type proportions in blood. Table 6. Gene ontology(GO) pathway enrichment analysis and joint mediation effect.
DOI: 10.6084/m9.figshare.14528535
title: MicroRNA-29b/29c targeting CTRP6 influences porcine adipogenesis via the AKT/PKA/MAPK Signalling pathway

description: Porcine fat deposition is an important economic trait of pig breeds, and understanding the gene regulatory network in adipocytes is essential for modern pig breeding. In a previous study, we demonstrated that miR-29a negatively regulates the differentiation of porcine adipocytes. In this study, we investigated the roles of miR-29b/c in porcine adipocytes and the underlying mechanisms. Using EdU staining and the CCK-8 assay, we observed that transfection with the miR-29b/c agomir promoted the proliferation of porcine intramuscular (IM) and subcutaneous (SC) adipocytes by altering the expression of cell-cycle-related genes. According to the results of oil red O staining and western blot analysis, transfection with the miR-29b/c agomir suppressed the differentiation of porcine SC and IM adipocytes via the AKT/PKA/MAPK signalling pathway. Furthermore, we proved that miR-29b/c regulates porcine adipocytes by directly targeting the 3ʹ-untranslated region (3ʹUTR) of CTRP6 using a dual-luciferase reporter assay. Finally, co-transfection with miR-29b/c and CTRP6 partially restored the changes of phenotype and gene expression induced by miR-29b/c overexpression in 3T3-L1 adipocytes. Taken together, our data demonstrate that both miR-29b and miR-29 c negatively regulate porcine adipogenesis by targeting CTRP6, which furthers our understanding of the gene network that regulates fat deposition in pigs.
DOI: 10.6084/m9.figshare.19767766
title: Additional file 1 of Respiratory viruses among ethnic Nicobarese during COVID-19 pandemic

description: Additional file 1. Raw data.
DOI: 10.6084/m9.figshare.19767766.v1
title: Additional file 1 of Respiratory viruses among ethnic Nicobarese during COVID-19 pandemic

description: Additional file 1. Raw data.
DOI: 10.6084/m9.figshare.20295721
title: Additional file 6 of Overdominant expression of related genes of ion homeostasis improves K+ content advantage in hybrid tobacco leaves

description: Additional file 6. Go enrichment of down-regulated overdominant expression genes in H hybrids
DOI: 10.6084/m9.figshare.12955712.v1
title: Additional file 1 of The speciation and adaptation of the polyploids: a case study of the Chinese Isoetes L. diploid-polyploid complex

description: Additional file 1: Table S1. The serial numbers of plastid DNA sequences in this study. Table S2. The serial numbers of nuclear DNA sequences in this study. Table S3. Haplotypes information of nuclear DNA data. Table S4. Haplotypes information of cpDNA data. Table S5. Location records used for ecological niche modeling. Table S6. Results of the nonparametric Kruskal test applied for the populations whose maternal contributor are different in the allopolyploid populations of I.sinensis.