cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3561042
title: Appendix E. Dispersal events by the three frugivore species under heterospecific trees with different microhabitat categories (gap: &lt;55% cover, medium-shaded: 55–75%, shaded: &gt;75%) relative to availability in their habitats. All dispersal events are considered including those under conspecific trees.

description: Dispersal events by the three frugivore species under heterospecific trees with different microhabitat categories (gap: &lt;55% cover, medium-shaded: 55–75%, shaded: &gt;75%) relative to availability in their habitats. All dispersal events are considered including those under conspecific trees.
DOI: 10.6084/m9.figshare.3561042.v1
title: Appendix E. Dispersal events by the three frugivore species under heterospecific trees with different microhabitat categories (gap: &lt;55% cover, medium-shaded: 55–75%, shaded: &gt;75%) relative to availability in their habitats. All dispersal events are considered including those under conspecific trees.

description: Dispersal events by the three frugivore species under heterospecific trees with different microhabitat categories (gap: &lt;55% cover, medium-shaded: 55–75%, shaded: &gt;75%) relative to availability in their habitats. All dispersal events are considered including those under conspecific trees.
DOI: 10.6084/m9.figshare.3561039
title: Appendix A. Derivation of Eqs. 4 and 7.

description: Derivation of Eqs. 4 and 7.
DOI: 10.6084/m9.figshare.3561039.v1
title: Appendix A. Derivation of Eqs. 4 and 7.

description: Derivation of Eqs. 4 and 7.
DOI: 10.6084/m9.figshare.3561036
title: Appendix B. Model selection results for Eurasian Collared Dove and House Finch case studies.

description: Model selection results for Eurasian Collared Dove and House Finch case studies.
DOI: 10.6084/m9.figshare.3561036.v1
title: Appendix B. Model selection results for Eurasian Collared Dove and House Finch case studies.

description: Model selection results for Eurasian Collared Dove and House Finch case studies.
DOI: 10.6084/m9.figshare.3561030
title: Appendix A. Details on methods employed to collect data on morphological traits and abundance of frugivorous birds and fruiting plants, results of regression analyses between species contribution to network structure and biological traits, biological correlates of extinction risk, and relationship between bird taxonomy and (i) species contribution to network structure and (ii) extinction risk.

description: Details on methods employed to collect data on morphological traits and abundance of frugivorous birds and fruiting plants, results of regression analyses between species contribution to network structure and biological traits, biological correlates of extinction risk, and relationship between bird taxonomy and (i) species contribution to network structure and (ii) extinction risk.
DOI: 10.6084/m9.figshare.3561027
title: Appendix B. Computation of nestedness, modularity, and species-level network metrics, values of network descriptors of the three interaction networks studied, and correlation coefficients for the species-level network metrics calculated for birds.

description: Computation of nestedness, modularity, and species-level network metrics, values of network descriptors of the three interaction networks studied, and correlation coefficients for the species-level network metrics calculated for birds.
DOI: 10.6084/m9.figshare.3561024
title: Appendix C. Results obtained from other classifications of bird sensitivity to human disturbances, based on Stotz et al. 1996.

description: Results obtained from other classifications of bird sensitivity to human disturbances, based on Stotz et al. 1996.
DOI: 10.6084/m9.figshare.3561021
title: Appendix D. Rarefaction analysis of species interactions.

description: Rarefaction analysis of species interactions.
DOI: 10.6084/m9.figshare.3561018
title: Appendix E. List of plant species that form the studied interaction networks.

description: List of plant species that form the studied interaction networks.
DOI: 10.6084/m9.figshare.3561015
title: Appendix F. List of bird species that form the studied interaction networks.

description: List of bird species that form the studied interaction networks.
DOI: 10.6084/m9.figshare.3561012
title: Appendix A. Illustration of the calculation of analyzed variables, supplemental results, parameter estimates, variable correlations and results of sensitivity analyses.

description: Illustration of the calculation of analyzed variables, supplemental results, parameter estimates, variable correlations and results of sensitivity analyses.
DOI: 10.6084/m9.figshare.3561009
title: Appendix B. Treatment of missing data, special cases, and details of statistical analyses.

description: Treatment of missing data, special cases, and details of statistical analyses.
DOI: 10.6084/m9.figshare.3561009.v1
title: Appendix B. Treatment of missing data, special cases, and details of statistical analyses.

description: Treatment of missing data, special cases, and details of statistical analyses.
DOI: 10.6084/m9.figshare.3561006
title: Appendix A. Development of plant biomass over the growing season, average values of the environmental variables used in the study and additional correlations between plant biomass and environmental variables.

description: Development of plant biomass over the growing season, average values of the environmental variables used in the study and additional correlations between plant biomass and environmental variables.
DOI: 10.6084/m9.figshare.3561006.v1
title: Appendix A. Development of plant biomass over the growing season, average values of the environmental variables used in the study and additional correlations between plant biomass and environmental variables.

description: Development of plant biomass over the growing season, average values of the environmental variables used in the study and additional correlations between plant biomass and environmental variables.
DOI: 10.6084/m9.figshare.3561003
title: Appendix A. Supplementary site and species information including Pearson correlation tables and principal component analyses of environmental variables and seedling traits.

description: Supplementary site and species information including Pearson correlation tables and principal component analyses of environmental variables and seedling traits.
DOI: 10.6084/m9.figshare.3561003.v1
title: Appendix A. Supplementary site and species information including Pearson correlation tables and principal component analyses of environmental variables and seedling traits.

description: Supplementary site and species information including Pearson correlation tables and principal component analyses of environmental variables and seedling traits.
DOI: 10.6084/m9.figshare.3561000
title: Appendix B. Seedling survival curves for each species at each site in protected and unprotected gardens.

description: Seedling survival curves for each species at each site in protected and unprotected gardens.
DOI: 10.6084/m9.figshare.3561000.v1
title: Appendix B. Seedling survival curves for each species at each site in protected and unprotected gardens.

description: Seedling survival curves for each species at each site in protected and unprotected gardens.
DOI: 10.6084/m9.figshare.3560997
title: Appendix C. Supplementary results: seedling performance in relation to the main environmental gradient among the sites and to a multivariate seedling trait axis.

description: Supplementary results: seedling performance in relation to the main environmental gradient among the sites and to a multivariate seedling trait axis.
DOI: 10.6084/m9.figshare.3560997.v1
title: Appendix C. Supplementary results: seedling performance in relation to the main environmental gradient among the sites and to a multivariate seedling trait axis.

description: Supplementary results: seedling performance in relation to the main environmental gradient among the sites and to a multivariate seedling trait axis.
DOI: 10.6084/m9.figshare.3560994
title: Appendix A. Change rate of soil temperature at 5 cm per day before 10 August since soil temperature at 5 cm was more than 0°C continuously for 5 days under different years and different elevation gradients.

description: Change rate of soil temperature at 5 cm per day before 10 August since soil temperature at 5 cm was more than 0°C continuously for 5 days under different years and different elevation gradients.
DOI: 10.6084/m9.figshare.12855080
title: Metafusion reference files

description: Reference files for running MetaFusion
DOI: 10.6084/m9.figshare.3560994.v1
title: Appendix A. Change rate of soil temperature at 5 cm per day before 10 August since soil temperature at 5 cm was more than 0°C continuously for 5 days under different years and different elevation gradients.

description: Change rate of soil temperature at 5 cm per day before 10 August since soil temperature at 5 cm was more than 0°C continuously for 5 days under different years and different elevation gradients.
DOI: 10.6084/m9.figshare.3560991
title: Appendix B. Diagram of the landscape and experimental sites, transfer process, and monitoring.

description: Diagram of the landscape and experimental sites, transfer process, and monitoring.
DOI: 10.6084/m9.figshare.3560991.v1
title: Appendix B. Diagram of the landscape and experimental sites, transfer process, and monitoring.

description: Diagram of the landscape and experimental sites, transfer process, and monitoring.
DOI: 10.6084/m9.figshare.3560988
title: Appendix C. Variation of soil temperature at 5 cm depth with growing days more than 0°C under different years and altitudes.

description: Variation of soil temperature at 5 cm depth with growing days more than 0°C under different years and altitudes.
DOI: 10.6084/m9.figshare.3560988.v1
title: Appendix C. Variation of soil temperature at 5 cm depth with growing days more than 0°C under different years and altitudes.

description: Variation of soil temperature at 5 cm depth with growing days more than 0°C under different years and altitudes.
DOI: 10.6084/m9.figshare.3560985
title: Appendix D. Relationships between first flowering dates and average annual air temperatures and annual soil temperatures at 5-cm depth.

description: Relationships between first flowering dates and average annual air temperatures and annual soil temperatures at 5-cm depth.
DOI: 10.6084/m9.figshare.3560985.v1
title: Appendix D. Relationships between first flowering dates and average annual air temperatures and annual soil temperatures at 5-cm depth.

description: Relationships between first flowering dates and average annual air temperatures and annual soil temperatures at 5-cm depth.
DOI: 10.6084/m9.figshare.3560982
title: Appendix E. Relationships of the differences of first flowering date between transferred and original sites and annual mean air temperature differences for different plant species.

description: Relationships of the differences of first flowering date between transferred and original sites and annual mean air temperature differences for different plant species.
DOI: 10.6084/m9.figshare.3560982.v1
title: Appendix E. Relationships of the differences of first flowering date between transferred and original sites and annual mean air temperature differences for different plant species.

description: Relationships of the differences of first flowering date between transferred and original sites and annual mean air temperature differences for different plant species.
DOI: 10.6084/m9.figshare.3560979
title: Appendix F. Relationships of the differences of first flowering date and annual soil temperature differences between transferred and original sites for different plant species.

description: Relationships of the differences of first flowering date and annual soil temperature differences between transferred and original sites for different plant species.
DOI: 10.6084/m9.figshare.3560979.v1
title: Appendix F. Relationships of the differences of first flowering date and annual soil temperature differences between transferred and original sites for different plant species.

description: Relationships of the differences of first flowering date and annual soil temperature differences between transferred and original sites for different plant species.
DOI: 10.6084/m9.figshare.3560976
title: Appendix G. Diagnostic plots for the regression of first flower date to soil temperature in Kobresia humilis.

description: Diagnostic plots for the regression of first flower date to soil temperature in Kobresia humilis.
DOI: 10.6084/m9.figshare.3560976.v1
title: Appendix G. Diagnostic plots for the regression of first flower date to soil temperature in Kobresia humilis.

description: Diagnostic plots for the regression of first flower date to soil temperature in Kobresia humilis.
DOI: 10.6084/m9.figshare.3560973
title: Appendix H. Diagnostic plots for the regression of first flower date to soil temperature in Carex scabrirostris.

description: Diagnostic plots for the regression of first flower date to soil temperature in Carex scabrirostris.
DOI: 10.6084/m9.figshare.3560973.v1
title: Appendix H. Diagnostic plots for the regression of first flower date to soil temperature in Carex scabrirostris.

description: Diagnostic plots for the regression of first flower date to soil temperature in Carex scabrirostris.
DOI: 10.6084/m9.figshare.3560970
title: Appendix I. Diagnostic plots for the regression of first flower date to soil temperature in Potentilla anserine.

description: Diagnostic plots for the regression of first flower date to soil temperature in Potentilla anserine.
DOI: 10.6084/m9.figshare.3560970.v1
title: Appendix I. Diagnostic plots for the regression of first flower date to soil temperature in Potentilla anserine.

description: Diagnostic plots for the regression of first flower date to soil temperature in Potentilla anserine.
DOI: 10.6084/m9.figshare.3560967
title: Appendix J. Diagnostic plots for the regression of first flower date to soil temperature in Potentilla nivea.

description: Diagnostic plots for the regression of first flower date to soil temperature in Potentilla nivea.
DOI: 10.6084/m9.figshare.3560967.v1
title: Appendix J. Diagnostic plots for the regression of first flower date to soil temperature in Potentilla nivea.

description: Diagnostic plots for the regression of first flower date to soil temperature in Potentilla nivea.
DOI: 10.6084/m9.figshare.3560964
title: Appendix K. Diagnostic plots for the regression of first flower date to soil temperature in Poa pratensis.

description: Diagnostic plots for the regression of first flower date to soil temperature in Poa pratensis.
DOI: 10.6084/m9.figshare.3560964.v1
title: Appendix K. Diagnostic plots for the regression of first flower date to soil temperature in Poa pratensis.

description: Diagnostic plots for the regression of first flower date to soil temperature in Poa pratensis.
DOI: 10.6084/m9.figshare.3560961
title: Appendix L. Diagnostic plots for the regression of first flower date to soil temperature in Stipa aliena.

description: Diagnostic plots for the regression of first flower date to soil temperature in Stipa aliena.
DOI: 10.6084/m9.figshare.3560961.v1
title: Appendix L. Diagnostic plots for the regression of first flower date to soil temperature in Stipa aliena.

description: Diagnostic plots for the regression of first flower date to soil temperature in Stipa aliena.
DOI: 10.6084/m9.figshare.3560958
title: Appendix A. Complete list of empirical food webs used.

description: Complete list of empirical food webs used.
DOI: 10.6084/m9.figshare.3560958.v1
title: Appendix A. Complete list of empirical food webs used.

description: Complete list of empirical food webs used.
DOI: 10.6084/m9.figshare.3560955
title: Appendix B. Effect of varying parameters used to estimate trophic level and diet.

description: Effect of varying parameters used to estimate trophic level and diet.
DOI: 10.6084/m9.figshare.3560955.v1
title: Appendix B. Effect of varying parameters used to estimate trophic level and diet.

description: Effect of varying parameters used to estimate trophic level and diet.
DOI: 10.6084/m9.figshare.3560952
title: Appendix C. Expanded version of Table 1, including references.

description: Expanded version of Table 1, including references.
DOI: 10.6084/m9.figshare.3560949
title: Appendix D. Coupling of fast-slow channels in the model.

description: Coupling of fast-slow channels in the model.
DOI: 10.6084/m9.figshare.3560949.v1
title: Appendix D. Coupling of fast-slow channels in the model.

description: Coupling of fast-slow channels in the model.
DOI: 10.6084/m9.figshare.3560946
title: Appendix A. Estimating calendar days and degree days to spawning employing the autumnal equinox as the onset of temperature dependency in gonadal maturation.

description: Estimating calendar days and degree days to spawning employing the autumnal equinox as the onset of temperature dependency in gonadal maturation.
DOI: 10.6084/m9.figshare.3560940
title: Appendix B. Analysis of spawning time variation using summer solstice as the onset of temperature dependency in gonadal development.

description: Analysis of spawning time variation using summer solstice as the onset of temperature dependency in gonadal development.
DOI: 10.6084/m9.figshare.3560940.v1
title: Appendix B. Analysis of spawning time variation using summer solstice as the onset of temperature dependency in gonadal development.

description: Analysis of spawning time variation using summer solstice as the onset of temperature dependency in gonadal development.
DOI: 10.6084/m9.figshare.3560937
title: Appendix C. Identification, location, spawning, temperature, and thermal history information for cod populations across the north Atlantic.

description: Identification, location, spawning, temperature, and thermal history information for cod populations across the north Atlantic.
DOI: 10.6084/m9.figshare.3560937.v1
title: Appendix C. Identification, location, spawning, temperature, and thermal history information for cod populations across the north Atlantic.

description: Identification, location, spawning, temperature, and thermal history information for cod populations across the north Atlantic.
DOI: 10.6084/m9.figshare.3560934
title: Appendix D. Estimating calendar days and degree days to spawning under future climate conditions.

description: Estimating calendar days and degree days to spawning under future climate conditions.
DOI: 10.6084/m9.figshare.3560934.v1
title: Appendix D. Estimating calendar days and degree days to spawning under future climate conditions.

description: Estimating calendar days and degree days to spawning under future climate conditions.
DOI: 10.6084/m9.figshare.3560931
title: Appendix A. Summary statistical information, resource abundance data, and additional analyses of the effects of initial conditions on Daphnia growth.

description: Summary statistical information, resource abundance data, and additional analyses of the effects of initial conditions on Daphnia growth.
DOI: 10.6084/m9.figshare.3560931.v1
title: Appendix A. Summary statistical information, resource abundance data, and additional analyses of the effects of initial conditions on Daphnia growth.

description: Summary statistical information, resource abundance data, and additional analyses of the effects of initial conditions on Daphnia growth.
DOI: 10.6084/m9.figshare.3560928
title: Appendix A. A map of the study site.

description: A map of the study site.
DOI: 10.6084/m9.figshare.3560925
title: Appendix B. Computational details and method validation.

description: Computational details and method validation.
DOI: 10.6084/m9.figshare.3560928.v1
title: Appendix A. A map of the study site.

description: A map of the study site.
DOI: 10.6084/m9.figshare.3560925.v1
title: Appendix B. Computational details and method validation.

description: Computational details and method validation.
DOI: 10.6084/m9.figshare.3560922
title: Supplement 1. Data and Matlab code.

description: File List plankton_mort.m (MD5: 30d22d4b051b03454fdf54ab8e585bef ) sim_fun.m (MD5: 33e12a378a5af32d0f131a695460dde0) Larv_data.mat (MD5: 0a4e8d0d0b6e737025ebd1a58816f305) Larval_abundance_data.csv (MD5: 0db6c2fafab998c67d23d551d1509790) Description plankton_mort.m is Matlab code that calculates mortality rates using the modified VLT method described in the text. It can use the Larv_data.mat data set supplied here or a user-supplied data set. Comments in the header of the file describe inputs, outputs, and other details for usage. sim_fun.m is Matlab code that simulates the log-likelihood of the ratio of two negative binomial-distributed variables, as described in Appendix B. It is called by plankton_mort.m and does not need to be manipulated by the user, unless the user wishes to experiment with alternative simulation approaches. Larv_data.mat is the data set used in this paper, formatted as a Matlab data file. It contains the structure file larv, which is just a structure version of the data set in Larval_abundance_data.csv, as well as the structure file larv_dur, which contains the stage durations of each species, the cell array SpeciesNames listing the names of species in the data set, and the vector Days listing the sampling days (1 to 65) on which sampling occurred. Larval_abundance_data.csv is the planktonic larval abundance data used in the paper. It contains data from plankton trawls made in June–July 2005 offshore of Bodega Marine Laboratory, California, USA. It contains the following columns: Date: date of sampling (month/day/year) Spp: organisms identified to lowest taxonomic level possible StageGroup: developmental stage of that taxon (early/mid/late/PL) (PL = postlarval) Day: day of sampling (1–65, bidaily) Rep: replicate trawl made on a given date Density/100 m<sup>3</sup>: abundance of that taxon and stage per 100 m<sup>3</sup> volume of water
DOI: 10.6084/m9.figshare.3560922.v1
title: Supplement 1. Data and Matlab code.

description: File List plankton_mort.m (MD5: 30d22d4b051b03454fdf54ab8e585bef ) sim_fun.m (MD5: 33e12a378a5af32d0f131a695460dde0) Larv_data.mat (MD5: 0a4e8d0d0b6e737025ebd1a58816f305) Larval_abundance_data.csv (MD5: 0db6c2fafab998c67d23d551d1509790) Description plankton_mort.m is Matlab code that calculates mortality rates using the modified VLT method described in the text. It can use the Larv_data.mat data set supplied here or a user-supplied data set. Comments in the header of the file describe inputs, outputs, and other details for usage. sim_fun.m is Matlab code that simulates the log-likelihood of the ratio of two negative binomial-distributed variables, as described in Appendix B. It is called by plankton_mort.m and does not need to be manipulated by the user, unless the user wishes to experiment with alternative simulation approaches. Larv_data.mat is the data set used in this paper, formatted as a Matlab data file. It contains the structure file larv, which is just a structure version of the data set in Larval_abundance_data.csv, as well as the structure file larv_dur, which contains the stage durations of each species, the cell array SpeciesNames listing the names of species in the data set, and the vector Days listing the sampling days (1 to 65) on which sampling occurred. Larval_abundance_data.csv is the planktonic larval abundance data used in the paper. It contains data from plankton trawls made in June–July 2005 offshore of Bodega Marine Laboratory, California, USA. It contains the following columns: Date: date of sampling (month/day/year) Spp: organisms identified to lowest taxonomic level possible StageGroup: developmental stage of that taxon (early/mid/late/PL) (PL = postlarval) Day: day of sampling (1–65, bidaily) Rep: replicate trawl made on a given date Density/100 m<sup>3</sup>: abundance of that taxon and stage per 100 m<sup>3</sup> volume of water
DOI: 10.6084/m9.figshare.3560919
title: Appendix A. Phytoplankton community and environmental time series data in Lake Biwa.

description: Phytoplankton community and environmental time series data in Lake Biwa.
DOI: 10.5281/zenodo.3960986
title: hmchou/time-series: lake monitoring data from YYL & CFL

description: raw data; June 2019 201906.zip