cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3685279_d5
title: Additional file 6: of Algorithm and software to automatically identify latency and amplitude features of local field potentials recorded in electrophysiological investigation

description: A function that is called by main_script.m to compute the signal second-time derivative. Also the functions that guarantee the correct running of main_script.m. To test the algorithm, invoking only main_script.m is necessary (all the other functions must be contained in the same folder). (M 1Â kb)
DOI: 10.6084/m9.figshare.c.3685279_d6.v1
title: Additional file 1: of Algorithm and software to automatically identify latency and amplitude features of local field potentials recorded in electrophysiological investigation

description: Which each column stands for a single recording in mV, a time vector (17500x1) in ms, and a structure containing the sampling frequency and the sampling interval. (MAT 94Â kb)
DOI: 10.6084/m9.figshare.c.3685291_d3
title: Additional file 1: Table S1. of Melanoma genome evolution across species

description: ZMEL1 whole-genome sequencing. This file contains all of the mutations called by MuTect and Shimmer, along with their associated quality scores and overlapping mutations. (XLSX 6276Â kb)
DOI: 10.6084/m9.figshare.c.3685291_d4.v1
title: Additional file 5: Table S5. of Melanoma genome evolution across species

description: ZMELR1 vs. ZMEL1 candidate mutations. This file contains the candidate mutations called from the RNA-seq in the ZMELR1 line compared to the ZMEL1 line. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3685279_d6
title: Additional file 1: of Algorithm and software to automatically identify latency and amplitude features of local field potentials recorded in electrophysiological investigation

description: Which each column stands for a single recording in mV, a time vector (17500x1) in ms, and a structure containing the sampling frequency and the sampling interval. (MAT 94Â kb)
DOI: 10.6084/m9.figshare.c.3685291_d4
title: Additional file 5: Table S5. of Melanoma genome evolution across species

description: ZMELR1 vs. ZMEL1 candidate mutations. This file contains the candidate mutations called from the RNA-seq in the ZMELR1 line compared to the ZMEL1 line. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3685279_d7.v1
title: Additional file 8: of Algorithm and software to automatically identify latency and amplitude features of local field potentials recorded in electrophysiological investigation

description: A function that is called by find_negativepeak_onset_max.m to compute the peak latency and amplitude. Also the functions that guarantee the correct running of main_script.m. To test the algorithm, invoking only main_script.m is necessary (all the other functions must be contained in the same folder). (M 874 bytes)
DOI: 10.6084/m9.figshare.c.3685291_d5.v1
title: Additional file 3: Table S3. of Melanoma genome evolution across species

description: ZMEL1 MiSeq validation calls. This file contains all of the mutation calls for the MiSeq validation run of the ZMEL1 line. (XLSX 178Â kb)
DOI: 10.6084/m9.figshare.c.3685279_d7
title: Additional file 8: of Algorithm and software to automatically identify latency and amplitude features of local field potentials recorded in electrophysiological investigation

description: A function that is called by find_negativepeak_onset_max.m to compute the peak latency and amplitude. Also the functions that guarantee the correct running of main_script.m. To test the algorithm, invoking only main_script.m is necessary (all the other functions must be contained in the same folder). (M 874 bytes)
DOI: 10.6084/m9.figshare.c.3685354_d2.v1
title: Additional file 2: Data S1. of Genome-wide analyses of four major histone modifications in Arabidopsis hybrids at the germinating seed stage

description: Number of sequenced reads mapped to reference genome. Data S2. List of the genes with non-additive expression and consistent non-additive histone modifications in LxC and CxL at germination stage. (XLSX 5193 kb)
DOI: 10.6084/m9.figshare.c.3685348_d2.v1
title: Additional file 13: Table S5. of Evolutionary analysis of the SUB1 locus across the Oryza genomes

description: Gene structure information (General feature format) about each of the analyzed genes.. (XLSX 239 kb)
DOI: 10.6084/m9.figshare.c.3685354_d2
title: Additional file 2: Data S1. of Genome-wide analyses of four major histone modifications in Arabidopsis hybrids at the germinating seed stage

description: Number of sequenced reads mapped to reference genome. Data S2. List of the genes with non-additive expression and consistent non-additive histone modifications in LxC and CxL at germination stage. (XLSX 5193 kb)
DOI: 10.6084/m9.figshare.c.3685348_d2
title: Additional file 13: Table S5. of Evolutionary analysis of the SUB1 locus across the Oryza genomes

description: Gene structure information (General feature format) about each of the analyzed genes.. (XLSX 239 kb)
DOI: 10.6084/m9.figshare.28050086
title: vanilla planifolia raw GC-MS files

description: Metabolite extraction from vanilla planifolia leaf tissue
DOI: 10.6084/m9.figshare.28050086.v1
title: vanilla planifolia raw GC-MS files

description: Metabolite extraction from vanilla planifolia leaf tissue
DOI: 10.6084/m9.figshare.c.3685348_d6.v1
title: Additional file 12: Table S4. of Evolutionary analysis of the SUB1 locus across the Oryza genomes

description: Genes with e-value below 1eâ  25 found by BLAST. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3685348_d6
title: Additional file 12: Table S4. of Evolutionary analysis of the SUB1 locus across the Oryza genomes

description: Genes with e-value below 1eâ  25 found by BLAST. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3685348_d8.v1
title: Additional file 10: Table S3. of Evolutionary analysis of the SUB1 locus across the Oryza genomes

description: BLAST analysis searching the 3â  UTR intron in SUB1C-like genes. (XLSX 12 kb)
DOI: 10.25910/gmha-jk63
title: Claims Submitted to the Multilateral Development Bank Accountability Mechanisms – 1994-2024

description: The dataset represents a summary depiction of grievance cases brought to the Accountability Mechanisms (AMs) of the six Multilateral Development Banks (MDBs) from 1994 to 2024: The Asian Development Bank, the African Development Bank, the Inter-American Development Bank, the European Bank for Reconstruction and Development, the World Bank (IBRD/IDA) and the World Bank Group (IFC and MIGA). These Accountability Mechanisms were created to enable people adversely or potentially adversely affected by a project or program financed by the MDBs to take their concerns to the Banks for recourse. The Accountability Mechanisms generally do not stop the project or provide material reparations. They seek to stop or prevent harm and mitigate the negative aspects of a development project. The objective of the database is to be able to garner a quick qualitative snapshot of any given case, as well as to be able to aggregate quantitative data for each AM as a whole and to identify trends over time. Each of the grievance mechanisms has a specific name, which may have changed over time. It may also be comprised of more than one office with separate functions (i.e. consulting with affected people versus a compliance investigation). Most of the Accountability Mechanisms now have separate functions, with the consultation process also called problem solving. The compliance phase is to investigate whether the MDBs have complied with their environmental and social policies and whether this has led to harm. The Accountability Mechanisms are detailed below. The dataset includes cases received by the AMs from the beginning of each mechanism until 19 December 2024. The last update for cases is 19 December 2024. Contact email: susan.park@sydney.edu.au
DOI: 10.6084/m9.figshare.c.3685360_d3.v1
title: Additional file 4: of Evaluation and implementation of highly challenging balance training in clinical practice for people with Parkinson’s disease: protocol for the HiBalance effectiveness-implementation trial

description: Funding I and II (Swedish). (ZIP 1271 kb)
DOI: 10.6084/m9.figshare.c.3685393_d1.v1
title: MOESM3 of Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments

description: Additional file 3: Table S2. CAZy, transcription factor and sugar transporter content of MFuzz clusters from the KMS time-course. File with lists of genes from each cluster from the KMS time-course of all genes from the categories of CAZy, Pfam for sugar transporters and Pfam for Zn2Cys6 transcription factors that met selection criteria. Only genes strongly associated with a cluster’s predominant expression profile (membership value &gt; 0.5 as well as an FPKM &gt; 10 at the cluster’s expression peak) were selected which led to the capture of between a half and a third of each category.
DOI: 10.6084/m9.figshare.c.3685393_d1
title: MOESM3 of Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments

description: Additional file 3: Table S2. CAZy, transcription factor and sugar transporter content of MFuzz clusters from the KMS time-course. File with lists of genes from each cluster from the KMS time-course of all genes from the categories of CAZy, Pfam for sugar transporters and Pfam for Zn2Cys6 transcription factors that met selection criteria. Only genes strongly associated with a cluster’s predominant expression profile (membership value &gt; 0.5 as well as an FPKM &gt; 10 at the cluster’s expression peak) were selected which led to the capture of between a half and a third of each category.
DOI: 10.6084/m9.figshare.c.3685393_d6
title: MOESM13 of Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments

description: Additional file 13: Table S10. CAZy, transcription factor and sugar transporter content of MFuzz clusters from the ILS time-course. File with lists of genes from each cluster from the ILS time-course of all genes from the categories of CAZy, Pfam for sugar transporters and Pfam for transcription factors that met selection criteria. Only genes strongly associated with a clusterâ  s predominant expression profile (membership value &gt; 0.5 as well as an FPKM &gt; 10 at the clusterâ  s expression peak) were selected which led to the capture of between a half and a third of each category.
DOI: 10.6084/m9.figshare.c.3685393_d7.v1
title: MOESM4 of Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments

description: Additional file 4: Table S3. Genes in Venn diagram and pectin related gene expression. The file contains lists, identity and expression values of the genes in different parts of the Venn diagram in Fig.Â 5a and the expression patterns of the genes annotated by Martens-Uzunova and Schaap [35] acting on pectin. Induced was considered as significantly higher transcript abundance (DESeq p adj &lt; 0.05 log2 FC of â Ľ 3) on lignocellulose compared to the glucose control, along with FPKM of â Ľ 50 on lignocellulose.
DOI: 10.6084/m9.figshare.c.3685393_d7
title: MOESM4 of Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments

description: Additional file 4: Table S3. Genes in Venn diagram and pectin related gene expression. The file contains lists, identity and expression values of the genes in different parts of the Venn diagram in Fig.Â 5a and the expression patterns of the genes annotated by Martens-Uzunova and Schaap [35] acting on pectin. Induced was considered as significantly higher transcript abundance (DESeq p adj &lt; 0.05 log2 FC of â Ľ 3) on lignocellulose compared to the glucose control, along with FPKM of â Ľ 50 on lignocellulose.
DOI: 10.6084/m9.figshare.c.3685393_d8
title: MOESM9 of Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments

description: Additional file 9: Table S7. Analysis of genes encoding proteins with unannotated functions. Analysis of the genes without a Pfam annotation or with only Pfam domains of unknown function whose transcription profiles co-cluster with genes encoding plant-polysaccharide active CAZymes in the MFuzz clustering of SignalP annotated genes dataset (see Additional file 5, Table S4).
DOI: 10.6084/m9.figshare.c.3685393_d8.v1
title: MOESM9 of Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments

description: Additional file 9: Table S7. Analysis of genes encoding proteins with unannotated functions. Analysis of the genes without a Pfam annotation or with only Pfam domains of unknown function whose transcription profiles co-cluster with genes encoding plant-polysaccharide active CAZymes in the MFuzz clustering of SignalP annotated genes dataset (see Additional file 5, Table S4).
DOI: 10.6084/m9.figshare.c.3685393_d9.v1
title: MOESM12 of Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments

description: Additional file 12: Table S9. File with FPKM values and DESeq2 statistics for all samples. The file contains gene identifiers and various annotations along with the FPKM values for each sample and condition, the fold change and p adj values as calculated by DESeq2 for the comparison between the Glu 48Â h control and the other 26 conditions.
DOI: 10.6084/m9.figshare.c.3685393_d9
title: MOESM12 of Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments

description: Additional file 12: Table S9. File with FPKM values and DESeq2 statistics for all samples. The file contains gene identifiers and various annotations along with the FPKM values for each sample and condition, the fold change and p adj values as calculated by DESeq2 for the comparison between the Glu 48Â h control and the other 26 conditions.
DOI: 10.6084/m9.figshare.c.3685393_d11.v1
title: MOESM14 of Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments

description: Additional file 14: Table S11. CAZy, transcription factor and sugar transporter content of MFuzz clusters from the HTS time-course. File with lists of genes from each cluster from the HTS time-course of all genes from the categories of CAZy, Pfam for sugar transporters and Pfam for transcription factors that met selection criteria. Only genes strongly associated with a clusterâ  s predominant expression profile (membership value &gt; 0.5 as well as an FPKM &gt; 10 at the clusterâ  s expression peak) were selected which led to the capture of between a half and a third of each category.
DOI: 10.6084/m9.figshare.c.3685414_d16.v1
title: Additional file 17: Table S7. of The landscape of sex-differential transcriptome and its consequent selection in human adults

description: SDE scores for non-testis sex-specific and moderately sex-specific protein-coding genes across 53 tissues. Values below or above zero denote men- or women-biased expression, respectively. (CSV 177Â kb)
DOI: 10.6084/m9.figshare.c.3685414_d15.v1
title: Additional file 3: Table S1. of The landscape of sex-differential transcriptome and its consequent selection in human adults

description: SDE scores for all protein-coding genes in 45 tissues common to men and women. Genes were analyzed by NOISeqBIO with scores of zero given for genes with insignificant differential expression. Other genes have SDE scores below zero for men-biased expression and above zero for women-biased expression. (CSV 2205Â kb)
DOI: 10.6084/m9.figshare.c.3685414_d15
title: Additional file 3: Table S1. of The landscape of sex-differential transcriptome and its consequent selection in human adults

description: SDE scores for all protein-coding genes in 45 tissues common to men and women. Genes were analyzed by NOISeqBIO with scores of zero given for genes with insignificant differential expression. Other genes have SDE scores below zero for men-biased expression and above zero for women-biased expression. (CSV 2205Â kb)
DOI: 10.6084/m9.figshare.c.3685414_d16
title: Additional file 17: Table S7. of The landscape of sex-differential transcriptome and its consequent selection in human adults

description: SDE scores for non-testis sex-specific and moderately sex-specific protein-coding genes across 53 tissues. Values below or above zero denote men- or women-biased expression, respectively. (CSV 177Â kb)
DOI: 10.6084/m9.figshare.c.3685414_d17.v1
title: Additional file 15: Table S6. of The landscape of sex-differential transcriptome and its consequent selection in human adults

description: SDE scores for testis overexpressed protein-coding genes across 53 tissues. Values below or above zero denote male or women-biased expression, respectively, and zero denotes genes with insignificant SDE. (CSV 791Â kb)
DOI: 10.6084/m9.figshare.c.3685414_d18.v1
title: Additional file 14: Table S5. of The landscape of sex-differential transcriptome and its consequent selection in human adults

description: Men-biased protein-coding gene terms enrichment analyses. Multiple Excel worksheets summarizing GeneAnalytics [35] gene enrichments including diseases, GO-terms, and pathways. (XLSX 557Â kb)
DOI: 10.6084/m9.figshare.c.3685414_d17
title: Additional file 15: Table S6. of The landscape of sex-differential transcriptome and its consequent selection in human adults

description: SDE scores for testis overexpressed protein-coding genes across 53 tissues. Values below or above zero denote male or women-biased expression, respectively, and zero denotes genes with insignificant SDE. (CSV 791Â kb)
DOI: 10.6084/m9.figshare.c.3685414_d18
title: Additional file 14: Table S5. of The landscape of sex-differential transcriptome and its consequent selection in human adults

description: Men-biased protein-coding gene terms enrichment analyses. Multiple Excel worksheets summarizing GeneAnalytics [35] gene enrichments including diseases, GO-terms, and pathways. (XLSX 557Â kb)
DOI: 10.6084/m9.figshare.28050089
title: Yucca elata raw GC-MS files

description: Metabolite extraction from Yucca elata leaf tissue
DOI: 10.6084/m9.figshare.28050089.v1
title: Yucca elata raw GC-MS files

description: Metabolite extraction from Yucca elata leaf tissue
DOI: 10.6084/m9.figshare.c.3686692_d7.v1
title: Additional file 8: of Comparative genomics of canine hemoglobin genes reveals primacy of beta subunit delta in adult carnivores

description: Sequences of primers used for PCR and sequencing studies. (XLSX 45Â kb)
DOI: 10.6084/m9.figshare.c.3686692_d6
title: Additional file 6: of Comparative genomics of canine hemoglobin genes reveals primacy of beta subunit delta in adult carnivores

description: Taxonomy annotation of genes used for the phylogenetic analysis with identification number and species information. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3686725_d1.v1
title: Additional file 1: of Genome scaffolding and annotation for the pathogen vector Ixodes ricinus by ultra-long single molecule sequencing

description: Dataset S1. Homology comparison between I. ricinus and I. scapularis. I. ricinus scaffolds were blasted against I. scapularis scaffolds and annotations of Blast hits matching significance criteria of a maximum e-value of 1.0e-5 and minimum 80% identity were transferred to the I. ricinus scaffolds. (XLS 2681Â kb)
DOI: 10.6084/m9.figshare.c.3686725_d1
title: Additional file 1: of Genome scaffolding and annotation for the pathogen vector Ixodes ricinus by ultra-long single molecule sequencing

description: Dataset S1. Homology comparison between I. ricinus and I. scapularis. I. ricinus scaffolds were blasted against I. scapularis scaffolds and annotations of Blast hits matching significance criteria of a maximum e-value of 1.0e-5 and minimum 80% identity were transferred to the I. ricinus scaffolds. (XLS 2681Â kb)
DOI: 10.6084/m9.figshare.c.3686692_d7
title: Additional file 8: of Comparative genomics of canine hemoglobin genes reveals primacy of beta subunit delta in adult carnivores

description: Sequences of primers used for PCR and sequencing studies. (XLSX 45Â kb)
DOI: 10.6084/m9.figshare.c.3686731_d1.v1
title: Additional file 2: of Behaviour change techniques targeting both diet and physical activity in type 2 diabetes: A systematic review and meta-analysis

description: Excel file documenting text for each BCT for all included studies. (XLSX 113Â kb)
DOI: 10.6084/m9.figshare.c.3686731_d1
title: Additional file 2: of Behaviour change techniques targeting both diet and physical activity in type 2 diabetes: A systematic review and meta-analysis

description: Excel file documenting text for each BCT for all included studies. (XLSX 113Â kb)
DOI: 10.6084/m9.figshare.c.3686737_d1.v1
title: Additional file 2: Table S2. of Implications of human evolution and admixture for mitochondrial replacement therapy

description: Counts of mtDNA haplogroups for the HGDP populations analyzed here. Global population distributions of mtDNA haplogroups are organized as shown for the 1KGP in Table 1. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3686737_d1
title: Additional file 2: Table S2. of Implications of human evolution and admixture for mitochondrial replacement therapy

description: Counts of mtDNA haplogroups for the HGDP populations analyzed here. Global population distributions of mtDNA haplogroups are organized as shown for the 1KGP in Table 1. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3686743_d1.v1
title: Additional file 7: of REAC technology as optimizer of stallion spermatozoa liquid storage

description: Experimental raw data. (XLSX 351 kb)
DOI: 10.6084/m9.figshare.c.3686758_d1.v1
title: Additional file 1: Tables S1-13. of Genomic exaptation enables Lasius niger adaptation to urban environments

description: Samples, number of CYP, OR, OBP and desturases genes, results of selection detection, neuropeptides. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3686758_d1
title: Additional file 1: Tables S1-13. of Genomic exaptation enables Lasius niger adaptation to urban environments

description: Samples, number of CYP, OR, OBP and desturases genes, results of selection detection, neuropeptides. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3686779_d4
title: MOESM2 of Was my science project eaten? A novel approach to validate consumption of marine biologging instruments

description: Additional file 2. Time-series depth and temperature records from X-Tag 65821.
DOI: 10.6084/m9.figshare.28050092.v1
title: Yucca rostrata raw GC-MS files

description: Metabolite extraction from Yucca rostrata leaf tissue
DOI: 10.6084/m9.figshare.28050092
title: Yucca rostrata raw GC-MS files

description: Metabolite extraction from Yucca rostrata leaf tissue
DOI: 10.6084/m9.figshare.c.3686836_d2
title: Additional file 2: File S3. of Variability among Cucurbitaceae species (melon, cucumber and watermelon) in a genomic region containing a cluster of NBS-LRR genes

description: Detailed list of PAV polymorphisms in cucumber chromosome 5 cluster of NBS-LRR genes. Orange boxes indicate PAV polymorphisms. (XLS 45 kb)
DOI: 10.6084/m9.figshare.c.3686836_d3.v1
title: Additional file 4: File S2. of Variability among Cucurbitaceae species (melon, cucumber and watermelon) in a genomic region containing a cluster of NBS-LRR genes

description: Protein fasta sequences of the resistance genes in melon, cucumber and watermelon used in this study. Melon fasta sequences have a resistance gene code [11, 16] and gene name [11]. (TXT 23Â kb)