cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17617/3.5s
title: Data from: Nutritional symbionts confer structural defence against predation and fungal infection in a grain pest beetle

description: functional data of Oryzaephilus surinamensis larval weight, adult cuticular traits (melanization and thickness), survival after fungal exposure, survival and handling time after exposure to predatory spiders
DOI: 10.17617/3.rrzryz
title: Raw data for "Piezoelectric-driven uniaxial pressure cell for muon spin relaxation and neutron scattering experiments"

description: Raw data for the publication titled, "Piezoelectric-driven uniaxial pressure cell for muon spin relaxation and neutron scattering experiments," to be published in Review of Scientific Instruments
DOI: 10.17617/3.pvpjrs
title: Time-resolving the COVID-19 outbreak using frequency domain analysis

description: This repository contains the python code used in the preprint article by the same name.
DOI: 10.17617/3.3u
title: Forest Saccharomyces paradoxus seasonal data

description: Genotype and phenotype data for a collection of Saccharomyces paradoxus from the Nehmtener Forst in Nehmten, Germany
DOI: 10.17617/3.1y
title: Eigenstrat files for Wang et al. 2019 Nature Communications

description: These are 1240K eigenstrat files from the newly reported ancient individuals in Wang et al. 2019 Nature Communications.

We used a random allele calling option as described in https://github.com/stschiff/sequenceTools
for Wang2019Caucasus.geno|snp|ind.txt files. Please use these for standard population genetic analyses. 

The majority calling option in pileupCaller was used for the .allchr. files. Please use these for Y haplotyping.
DOI: 10.21233/ttd0-xs54
title: Mesquite Pond charcoal surface sample dataset

description: Raw data for the Mesquite Pond charcoal surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.1w
title: Community, competition, and dispersal data on yeast inhabiting carnivorous Sarracenia Purpurea pitchers

description: Fungal communities were assessed in a metacommunity of Sarracena purpurea carnivorous pitchers using 454 sequencing. Community data were supplemented with laboratory competition assays and targeted sampling of three yeast species using species-specific PCR primers. Data include an operational taxonomic unit (OTU) table with assigned taxonomy of each sequenced sample in Qiime 1.3.0 format, the mapping file (including location and successional time data) associated with sequenced samples, and a .fasta file containing a representative sequence for each OTU. Additionally, there is are tab-delimited text files containing colony counts before and after a competition experiment with three selected pitcher yeast species, location and sampling time data for all studied pitchers, and presence/absence data for the three selected yeast species in all studied pitchers. 

These data are cited in the following paper:
Boynton PJ, Peterson CN, Pringle A (2019) Superior dispersal ability can lead to persistent ecological dominance throughout succession. Applied and Environmental Microbiology 85:e02421-18. https://doi.org/10.1128/AEM.02421-18.
DOI: 10.17617/3.6q
title: Supplemental Data Files to Niche partioning by phototsynthetic plankton as a driver of CO2-fixation in the oligotrophic South Pacific Sub-tropical Ocean

description: Supplementary Files to the manuscript "Niche partitioning by photosynthetic plankton as a driver of CO2-fixation across the oligotrophic South Pacific Sub-tropical Ocean" submitted by Duerschlag et al. to The ISME Journal.
Contains data tables in for Excel and csv format: 
Suppl File 2: Station and CO2 fixation rate data
Suppl File 3: Single cell C fixation rates
Suppl File 4 Statistics for Nutrient Addition experiment 
Text file for annotation for the 16S rRNA chloroplast tree (Fig 4)
DOI: 10.17617/3.1t
title: Unconventional magneto-transport in ultrapure PdCoO2 and PtCoO2

description: Max Planck Institute for Chemical Physics of Solids, Nöthnitzer Straße 40, 01187 Dresden, Germany
DOI: 10.17617/3.tbfvus
title: Microenvironment-mediated cancer dormancy : insights from metastability theory
DOI: 10.17617/3.1c
title: Schmidtberg_et_al_2018: Supplemental Data

description: GC-MS data and figures
Microbiome 16S amplicon sequence data and descriptions
DOI: 10.17617/3.xyvbjb
title: Supplemental Data Files_Diverse methylotrophic methanogenic archaea cause high methane emissions from seagrass meadows
DOI: 10.17617/3.uv12e5
title: Moscovice supplemental files
DOI: 10.17617/3.5r
title: Proteomic data from Candidatus Streptomyces philanthi biovar triangulum

description: Proteomic data sets from Candidatus Streptomyces philanthi biovar triangulum, the symbiont of the European beewolf Philanthus triangulum triangulum.

The subcollection "in vitro proteome" was generated from axenic culture of Candidatus Streptomyces philanthi biovar triangulum strain 23Af2 in liquid Grace medium, the subcollection "in vivo proteome" from secretions of female European beewolves, Philanthus triangulum triangulum, into their brood cell, containing Candidatus streptomyces philanthi biovar triangulum, but not closer identified strains. 

Detailled information on each experiment is included in a method file in the respective sub collection, and in the associated publications.
DOI: 10.17617/3.46
title: Global Rooting Depth Datasets

description: This collection contains two global datasets of plant available water from the publication Kleidon (2004).
DOI: 10.15468/dl.xubywe
title: Occurrence Download

description: A dataset containing 389 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lysmata amboinensis (De Man, 1888)"
 ]
}

 The dataset includes 389 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021460-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17617/3.39
title: Available data for "MIMiX: A Multipurpose In-situ Microreactor system for X-ray microspectroscopy"
DOI: 10.17617/3.1s
title: CaosDB v0.1

description: Published version 0.1 of CaosDB, for referencing by articles, posters, etc.
DOI: 10.17617/3.6xf79t
title: Supporting information for Johanndrees, Baggs et al 2021

description: This collection contains gene-level expression data calculated in Johanndrees, Baggs et al 2021 "Differential EDS1 requirement for cell death activities of plant TIR-domain proteins" doi.org/10.1101/2021.11.29.470438
DOI: 10.17617/3.7z
title: Scripts and data for: Costs dictate strategic investment in dominance interactions
DOI: 10.17617/3.uv4fbn
title: Shukla et al 2018_Microbiome-assisted carrion preservation aids larval development in a burying beetle
DOI: 10.17617/3.18
title: KNM-ER 42700: endocranial data

description: data analyzed in
Neubauer, Gunz, Leakey, Leakey, Hublin and Spoor (2018). Reconstruction, endocranial form and taxonomic affinity of the early Homo clavaria KNM-ER 42700, Journal of Human Evolution
DOI: 10.21233/6wkc-va67
title: Lake Superior water chemistry dataset

description: Raw data for the Lake Superior water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.4g
title: imageJ macros for HFSP
DOI: 10.17617/3.6v
title: Modulation of behavior in zebrafish by the neuropeptide PTH2

description: We analyzed the behavior of zebrafish with a premature stop codon in the CDS of the gene Pth2. We conducted several behavioral tests, for which we provide the obtained data in this collection.
DOI: 10.17617/3.6c
title: Insight: a Haptic Sensor Powered by Vision and Machine Learning

description: Data and Code
DOI: 10.17617/3.6b
title: Estimating the effect of a scanner upgrade on measures of grey matter structure for longitudinal designs

description: Longitudinal imaging studies are crucial for advancing the understanding of brain development over the lifespan. Thus, more and more studies acquire imaging data at multiple time points or with long follow-up intervals. In these studies changes to magnetic resonance imaging (MRI) scanners often become inevitable which may decrease the reliability of the MRI assessments and introduce biases.
We therefore investigated the difference between MRI scanners with subsequent versions (3 Tesla Siemens Verio vs. Skyra) on the cortical and subcortical measures of grey matter in 116 healthy, young adults using the well-established longitudinal FreeSurfer stream for T1-weighted brain images. We found excellent between-scanner reliability for cortical and subcortical measures of grey matter structure (intra-class correlation coefficient &gt; 0.8). Yet, paired t-tests revealed statistically significant differences in at least 67% of the regions, with percent differences around 2 to 4%, depending on the outcome measure. Offline correction for gradient distortions only slightly reduced these biases. Further, T1-imaging based quality measures reflecting gray-white matter contrast systematically differed between scanners.
We conclude that scanner upgrades during a longitudinal study introduce bias in measures of cortical and subcortical grey matter structure. Therefore, before upgrading a MRI scanner during an ongoing study, researchers should prepare to implement an appropriate correction method for these effects.

This dataset contains all the data necessary to reproduce the region-wise analyses in this manuscript.
- qa_info.csv (manual quality control results)
-mriqc_measures.csv (output from mriqc)
- aseg_update.csv (aseg outputs from Skyra ND/Verio ND)
- aparc_ct_update.csv (cortical thickness outputs from Skyra ND/Verio ND)
- aparc_volume_update.csv (cortical volume outputs from Skyra ND/Verio ND)
- aparc_area_update.csv (cortical area outputs from Skyra ND/Verio ND)
- vol_unw.csv (aseg outputs from unwarped Skyra ND/Verio ND)
- aparc_ct_unw.csv (cortical thickness outputs from unwarped Skyra ND/Verio ND)
- aparc_ct_veriond_skyrad.csv (cortical thickness outputs from previous analysis Skyra D/Verio ND)
DOI: 10.17617/3.1x
title: Data for: Early-life social environment predicts social network position in wild zebra finches

description: Data and R scripts to fully replicate the results of the study by Brandl et al. (Proc. Roy. Soc. B, https://doi.org/10.1098/rspb.2018.2579)
DOI: 10.17617/3.24
title: The defensive function of a pollinator attracting floral volatile

description: Original data sets for the publication named above
DOI: 10.17617/3.vajoov
title: Functional brain networks are sensitive to concentrations of tau-protein in a mouse model of Alzheimer’s disease

description: MRI raw data collection for the paper of Green, Sydow, Vogel, et al. (submitted)
DOI: 10.17617/3.47
title: Raw Data for "Rigid platform for applying large tunable strains to mechanically delicate samples"

description: raw data for the article, "Rigid platform for applying large tunable strains to mechanically delicate samples" to be published in Review of Scientific Instruments
DOI: 10.17617/3.3h
title: The Kinetic Energy Budget of the lower Atmosphere (KEBA) Model: Files from the project 'Making the most of offshore wind', commissioned by Agora Energiewende und Agora Verkehrswende

description: This collection contains files associated with estimates performed by the KEBA model for the OffPot project by Agora Energiewende and Agora Verkehrswende
DOI: 10.17617/3.72
title: Raw Data for "Field-induced transition within the superconducting state of CeRh2As2"
DOI: 10.17617/3.amaswe
title: Data for "3D network of nanochannels in mineralizing bone and cartilage"
DOI: 10.17617/3.8v
title: Microevolution of Pieris butterfly genes involved in host-plant adaptation along a host-plant community cline

description: Supplementary data for "Microevolution of Pieris butterfly genes involved in host-plant adaptation along a host-plant community cline"
DOI: 10.17617/3.og927p
title: Impacts drive lunar rockfalls over billions of years

description: This catalog contains all lunar rockfalls mapped in LRO NAC images using a Convolutional Neural Network, as presented and discussed in Bickel et al. (2020): https://www.nature.com/articles/s41467-020-16653-3, capped at 80°N and 80°S and 60°N and 60°S (only images with solar incidence angles between 10 and 80°/60° have been used). The 80°-capped catalog (used for Bickel et al., 2020) contains detections with CT values above 0.6 (136,610 detections) and 0.8 (22,108 detections). The 60°-capped catalog is a re-run performed in 2021 that contains detections with CT values above 0.6 (92,843 detections), 0.7 (44,859 detections), and 0.8 (15,134 detections). Please note that the 80°-capped catalogs erroneously contain a number of duplicate entries.

The catalogs contain information about (sequentially): NAC_ID (image id), C_LON (detection box center longitude), C_LAT (detection box center latitude), UL_LON (detection box upper left longitude), UL_LAT (detection box upper left latitude), R_DIAM (estimated rockfall diameter in meter), X_LEN_P (detection box x horizontal length in pixel), Y_LEN_P (detection box y vertical length in pixel), X_LEN_M (detection box x horizontal length in meter), Y_LEN_M (detection box y vertical length in meter), UL_X_IMG (detection box upper left image x horizontal coordinate), UL_Y_IMG (detection box upper left image y vertical coordinate), LR_X_IMG (detection box lower right image x horizontal coordinate), LR_Y_IMG (detection box lower right image y vertical coordinate), C (network confidence [posterior probability] in percent), RES (NAC spatial resolution in m/pixel). Please refer to Bickel et al. (2020) for details about the methods and auxiliary datasets used to generate this catalog as well as the limitations. Information about the rockfall diameter estimate can be found in Bickel et al. (2018): https://ieeexplore.ieee.org/document/8587120.
DOI: 10.17617/3.2e
title: Multiatlas-based fusion segmentation for hypothalamus

description: A dataset for multiatlas based fusion segmentation of hypothalamus including a subject-specific template, 44 atlas images of segmented left and right hypothalami and T1-weighted anatomical image, processing scripts using ANTS implemented with nipype in python 2.7.

Further information can be found in the publication: K. Thomas & V. Witte: Altered hypothalamic microstructure in human obesity (https://www.biorxiv.org/content/10.1101/593004v1)
DOI: 10.17617/3.87feby
title: Example stimuli and Data for Theta band oscillations reflect more than entrainment: behavioral and neural evidence demonstrate an active chunking process

description: This data collection includes example stimuli and preprocessed datasets for our manuscript titled 'Theta band oscillations reflect more than entrainment: behavioral and neural evidence demonstrate an active chunking process', which was under review.
DOI: 10.17617/3.4p
title: Fluctuation spectroscopy of giant unilamellar vesicles using confocal and phase contrast microscopy, Faizi et al., 2020 Soft Matter

description: Raw data for Faizi et al., 2020 Soft Matter
DOI: 10.17617/3.4h
title: Autofluorescence of stingray skeletal cartilage: hyperspectral imaging as a tool for histological characterization

description: Raw and Primary Data
DOI: 10.21233/b4b6-6p42
title: LDDsite149 ostracode surface sample dataset

description: Raw data for the LDDsite149 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.1e
title: Ontogenetic differences in the chemical defence of flea beetles influence their predation risk
DOI: 10.17617/3.dmstd5
title: Kepler data

description: Kepler PDC-MAP data of 5824 solar-like stars
DOI: 10.17617/3.8e
title: Flexible Interneuron function

description: Experimental data and code related to Merino et al. 2021
DOI: 10.17617/3.angztw
title: OpenVirtualObjects.v1

description: OpenVirtualObjects (OVO): An open set of standardized and validated 3D household objects for virtual reality-based research, assessment, and therapy.
DOI: 10.17617/3.yioqgh
title: Cassini MIMI/LEMMS Proton Channel Response functions

description: The files include the results of the MIMI/LEMMS response simulations detailed in Roussos and Kollmann et al. (2018)

(A radiation belt of energetic protons located between Saturn and its rings, Science 05 Oct 2018, Vol. 362, Issue 6410, eaat1962, DOI: 10.1126/science.aat1962)
DOI: 10.17617/3.ub6egg
title: Dataset and FIJI macro for cell segmentation using DRAQ5 cell staining

description: Macro for cell segmentation using single dye. Dataset contains 3D confocal fluorescence microscopy stacks of stained HeLa cells (24 h culture), differentiated THP-1 cells (1 - 6 days culture) and CHO cells (24 - 48 h culture at 31 and 37 °C). DRAQ5 staining for nuclei (Channel 0) and transmitted laser light (Channel 1).
DOI: 10.17617/3.55
title: Short-read data, Spodoptera frugiperda (FAW)

description: Short-read Illumina (HiSeq2500, 100nt paired-end) data generated from different Spodoptera frugiperda tissues: dissected guts (A) and integument/rest of the body (B), and Sf9 cultured cells (C).
DOI: 10.17617/3.57
title: Movement analysis of primate molar teeth under load using synchrotron X-ray microtomography

description: Synchrotron CT data

The synchrotron data are resampled for uploading to the EDMOND portal. 
For full resolution please contact: maximilian_bemmann@eva.mpg.de
DOI: 10.15468/dl.7n6mcf
title: Occurrence Download

description: A dataset containing 468 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is Voacanga africana Stapf ex Scott Elliot"
 ]
}

 The dataset includes 468 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021462-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17617/3.eoewoi
title: Data_Model_MSG
DOI: 10.17617/3.2f
title: Data for: Wild zebra finches that nest synchronously have long-term stable social ties

description: Data to replicate the results of the study by Brandl et al.
DOI: 10.17617/3.82
title: Repeat annotations on Blepharisma stoltei MAC and MAC+IES assemblies

description: RepeatModeler, 2.0.1
description: RepeatMasker, 4.1.1
DOI: 10.17617/3.5b
title: Hijacking the mustard-oil bomb: how a glucosinolate-sequestering flea beetle copes with plant myrosinases
DOI: 10.17617/3.4a
title: Data for the article "An on-chip III-V-semiconductor-on-silicon laser frequency comb for gas-phase molecular spectroscopy in real-time"

description: Data supporting the plots in the article "An on-chip III-V-semiconductor-on-silicon laser frequency comb for gas-phase molecular spectroscopy
in real-time" by K. Van Gasse, Z. Chen, E. Vicentini, J. Huh, S. Poelman, Z. Wang, G. Roelkens, T.W. Hänsch, B. Kuyken, N. Picqué
DOI: 10.17617/3.8l
title: Transport data for "Heisenberg spins on an anisotropic triangular lattice: PdCrO2 under uniaxial stress"
DOI: 10.17617/3.m1thre
title: Microscopy and simulation data of grain boundary phase transfromations in elemental copper

description: The collection contains scanning transmission electron microscopy data, data from grain boundary structure search and atomic grain boundary models of grain boundary phase transformations in elemental copper
DOI: 10.17617/3.5f
title: Analysis scripts and raw data for Internet measurements on port 0

description: This collection contains analysis scripts and raw data to reproduce our analysis for the active measurements on transport port 0. The results are published in the paper "Zeroing in On Port 0 Traffic in the Wild" published at the "Passive and Active Measurement Conference 2021" (PAM 2021).

More information and updates can be found on the project's website:

https://inet-port0.mpi-inf.mpg.de/
DOI: 10.17617/3.5k
title: Dynamic Mechanical Control of Alginate-Fibronectin Hydrogels with Dual Crosslinking: Covalent and Ionic

description: Raw and Primary Data
DOI: 10.17617/3.4m
title: Model results related to Liu et al 2020

description: This dataset contains model results presented in Liu et al. (2020). Each file with the name Fig.* contains the data of the coresponding figure in the paper.
DOI: 10.17617/3.4o
title: Stable Carbon Isotope Studies in a Tropical Thai Paddy

description: Available data for paper "Stable Carbon Isotope Studies of CH4 Dynamics via Water- and Plant- Pathways in a Tropical Thai Paddy: Insights into Diel CH4 Transportation" (JGR-Biogeosciences, 2020, acccepted). When using the data, please refer to the paper mentioned above.
DOI: 10.17617/3.44
title: Data 1: ZooMS MALDI-TOF Data Files
DOI: 10.17617/3.7p
title: Data and Materials from "Foraging synchrony drives resilience in human-dolphin mutualism"

description: This package provides the empirical data and all the computer code to replicate the analyses, results and main figures of the article:
Cantor M, Farine DR, Daura-Jorge FG. 2021 Foraging synchrony drives resilience in human-dolphin mutualism.

Each computer code (.R) has, in the subfolder ./data/, an associated database (.RData) composed by multiple objects, whose variables are detailed by their associated READ-ME files (.txt). The code and data are organized in three parts:

* Part 1 out of 3: Code and multiplatform data used in the empirical analyses of the dolphin-fisher interaction. See the R code in 01_ANALYSES_Cantor-etal.R, the data in /data/01_DATA_Cantor-etal.RData, and data details in the /data/01_README_Cantor-etal.txt

* Part 2 out of 3: Code and long-term data used in the empirical analyses of dolphin and fisher population dynamics. See the R code in 02_ANALYSES_Cantor-etal.R, the data in /data/2_DATA_Cantor-etal.RData, and data details in the /data/02_README_Cantor-etal.txt

* Part 3 out of 3: Code and empirical data for the numerical modelling of the persistence of the dolphin-fisher interaction. See the R code in 03_ANALYSES_Cantor-etal.R, the data in /data/03_DATA_Cantor-etal.RData, and data details in the /data/03_README_Cantor-etal.txt.

Finally, this package also includes a folder ./Supplementary_Movies with 5 short video clips presented in the Supplementary Material of the article.
DOI: 10.17617/3.ajbv1s
title: EVICAN Dataset

description: Cell microscopy images with cell and nucleus segmentations in COCO annotation format
DOI: 10.17617/3.2h
title: Analysis of rotationally dependent dissociative recombination rates

description: Underlying data for the article "Quantum-state–selective electron recombination studies suggest enhanced abundance of primordial HeH+" published in Science Vol. 365, Issue 6454 (2019), pp. 676-679
DOI: 10.17617/3.9jrmyl
title: Aesthetic rate perception of birdsong

description: Birdsong stimuli used in study "Listening to birdsong reveals 
basic features of rate perception and aesthetic judgments".
DOI: 10.17617/3.75
title: Supplementary Data to "Survey Results on the Usage of Electronic Laboratory Notebooks in the Max Planck Society 2021"

description: These are the processed survey data from the “Survey on the Usage of Electronic Laboratory Notebooks in the Max Planck Society 2021” (http://hdl.handle.net/21.11116/0000-0008-F071-9), which was carry in spring 2021. See also https://rdm.mpdl.mpg.de/2021/08/02/survey-results-on-the-usage-of-elns-in-the-max-planck-society-2021/.