cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/ptxnnb
title: Increased Power for the Analysis of Label-Free LC-MS/MS Proteomic Data by Combining Spectral Counts and Peptide Peak Attributes

description: Liquid chromatography-tandem mass spectrometry (LC-MS/MS)-based proteomics provides a wealth of information about proteins present in biological samples. In bottom-up LC-MS/MS-based proteomics, proteins are enzymatically digested into peptides prior to query by LC-MS/MS. Thus, the information directly available from the LC-MS/MS data is at the peptide level. If a protein-level analysis is desired, the peptide-level information must be tolled up into protein-level information. We propose a principal components analysis-based statistical method, ProPCA, for efficiently estimating relative protein abundance from bottom-up label-free LC-MS/MS data, which incorporates both spectral count information and LC-MS peptide ion peak attributes, such as peak area, volume or height. ProPCA may be used effectively with a variety of quantification platforms and is easily implemented. We show that ProPCA outperforms existing quantitative methods for peptide-protein roll up, including special counting methods and other methods for combining LC-MS peptide peak attributes. The performance of ProPCA is validated using a dataset derived from the LC-MS/MS analysis of a mixture of protein standards (the UPS2 proteomic dynamic range standard introduced by the ABRF Proteomics Standards Research Group, 2006). Finally, we apply ProPCA to a comparative LC-MS/MS analysis of digested total cell lysates prepared for LC-MS/MS analysis by alternative lysis methods and show that ProPCA identifies more differently abundant proteins than competing methods.
DOI: 10.7910/dvn/wzb1en
title: Legislative Responses to Unconstitutionality: A View from the States

description: This article contributes to literature on legislative - court relations by incorporating the states. Pickerill (2004) examined Congressional responses to court rulings declaring statutes unconstitutional, classifying responses into three categories - amending, repealing, or doing nothing. I assembled a list of all Minnesota, Michigan, and Wyoming statutes declared unconstitutional from 1940 to 2008 by state or federal courts. I then determined the legislature's response. I find unexpected differences in state responsiveness, and between the states and Congress. Also, state legislatures are more likely to respond to a ruling of unconstitutionality from their own courts than from the federal courts.
DOI: 10.7910/dvn/bkvx4g
title: The Turkey Protest, Repression, and Pro-Government Rally Dataset (TPRPGRD), 2013-2016

description: We introduce an original event dataset on protests, repression, and pro-government rallies in Turkey under the rule of the Justice and Development Party during a period in which authoritarianism has increased in intensity. Using protest event analysis, this dataset includes actions of governments, pro-government actors, and dissidents hand-coded from two newspapers between 1 January 2013, and 31 December 2016. The dataset enables researchers to study pro-government rallies (PGRs), anti-government protests, and state actions during a heightened period of contention in Turkey.

To use the dataset, cite the following article: 

Kahvecioğlu A., T. Demirel-Pegg & İ̇. Aytürk. (2022). Introducing the Turkey Protest, Repression, and Pro-Government Rally Dataset (TPRPGRD). Southeast European and Black Sea Studies, DOI: 10.1080/14683857.2022.2114197
DOI: 10.7910/dvn/jvplq7
title: Replication Data for: "Policy Dynamics and Government Attention over Welfare Policies: An Analysis of the Brazilian Case"

description: The recognition of issues as public problems and the ways governments prioritize them constitute focal points in the study of policy change and policy dynamics. In Brazil and other Latin American countries, social welfare systems and related policies have undergone transformations throughout the recent democratic period. This article aims to understand changes in the Brazilian social welfare agenda by means of an analysis of the attention given to social welfare policies at the federal level. The main analytical and methodological contribution of this article is its use of the research strategy developed under the Comparative Agendas Project (CAP) to analyze the Brazilian situation. We drew on a set of unpublished datasets on the attention given by governments to social welfare policies from 1988 to 2018 that involves more than one thousand observations across six different datasets. The analyses are made at two different levels: first, we seek to understand macro trends and moments of continuity and inflection in social welfare policy by federal government administration. Second, we analyze the composition of the attention given to social welfare policies, thereby identifying the themes given the highest priority.
DOI: 10.7910/dvn/wzi945
title: Replication Data for: Reconsidering the Link Between Self-Reported Personality Traits and Political Preferences

description: Replication data and code belonging to our article: Bakker, B.N., Lelkes, Y. & Malka, A. (2021) "Rethinking the Link Between Self-Reported Personality Traits and Political Preferences" American Political Science Review
DOI: 10.7910/dvn/vyyzqw
title: The Effect of Shadow Evacuations on Megaregion Disasters

description: Data produced by traffic simulator TRANSIMS. It contains link volumes for roads inside the US Gulf Coast Megaregion for different shadow evacuation participation. The modeler was Zhao Zhang who also produced the data.
DOI: 10.7910/dvn/24751
title: Impact Lite Dataset

description: IMPACTlite survey dataset: detailed information about household composition, production systems and activities, land and labour allocatio
n, income from on farm and off farm activities, household consumption of food, and asset, with a particular gender lens on control over resources, land ownership and allocation of activities. Standardized detailed survey instrument (IMPACTlite) carried on in 13 benchmark sites across East Africa, West Africa and South Asia.
DOI: 10.7910/dvn/8mjg8k
title: Replication Data for: Metrics in Large-Scale Agile Software Development: A Multivocal Literature Review

description: To allow peer review and replicability of the study, the entire methodology described in detail and all data from the selection of academic studies that were included in this multivocal literature review are available as supplementary material.
description: The study to which these data refer will be published in the proceedings of the XXVII Ibero-American Conference on Software Engineering (CIbSE 2024).
DOI: 10.7910/dvn/bzx609
title: A12_20830.JPG

description: Link to OCHRE database: &lt;a href = ''http://pi.lib.uchicago.edu/1001/org/ochre/be14af54-21f6-4935-8d92-d028c0858f6c'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/be14af54-21f6-4935-8d92-d028c0858f6c
DOI: 10.7910/dvn/wb7kpy
title: Replication Data for: The Chicago School’s Limited Influence on International Antitrust

description: These files provide replication data and code for the paper "The Chicago School’s Limited Influence on International Antitrust." More information on the broader project is available at: https://comparativecompetitionlaw.org.
DOI: 10.7910/dvn/wbhxxt
title: Piscivore and prey fish size relationships

description: Body size governs predator-prey interactions, which in turn structure populations, communities, and food webs. However, information on piscivore-prey size relationships is limited. We quantified predator-prey total length and mass relationships for several freshwater piscivorous taxa: crappie (Pomoxis spp.), largemouth bass (Micropterus salmoides), muskellunge (Esox masquinongy), northern pike (Esox lucius), rock bass (Ambloplites rupestris), smallmouth bass (Micropterus dolomieu), and walleye (Sander vitreus). The range of prey total lengths increased with predator total length. The median and maximum ingested prey total length varied with predator taxon and length, but generally ranged from 10 - 20% and 32 - 46% of predator total length, respectively. Predators tended to consume larger fusiform prey than laterally compressed prey. With the exception of large Muskellunge, predators most commonly consumed prey between 16 and 73 mm. A sensitivity analysis indicated these trends can be very accurate at sample sizes greater than 1,000 diet items and fairly accurate at sample sizes greater than 100 (e.g., for a prey total length of 153 mm, we observed a deviation of &lt;1mm (σ = ±&lt;1.6 mm) given n = 1,000 and 1 mm (σ = ±&lt;2 mm) given n = 100). However, sample sizes less than 50 should be evaluated with caution. Our findings support previous work suggesting that predator-prey interactions may not be governed solely by maximizing energy intake while minimizing handling time, but also driven by capture success. Furthermore, median log10 predator-prey body mass ratios ranged from 1.9 - 2.5, nearly 50% lower than values previously reported for freshwater fishes. Managers, researchers, and modelers could use our findings as a tool for numerous predator-prey evaluations from stocking size optimization to individual-based bioenergetics analyses identifying prey size structure. To this end, we have developed a web-based user interface to maximize the utility of our models that can be found at www.LakeEcologyLab.org/pred_prey.
DOI: 10.7910/dvn/bxovcs
title: CSV file: Supplementary Table 7

description: Supplementary Table 7. The pathways most targeted by symptomatic and disease-modifying treatments. We used Open Targets and Therapeutic Target Database to assign gene targets to drugs. Drugs were only counted once per pathway even if they targeted it via multiple genes. We did not correct for pathway size as larger pathways do not require more genes to be targeted to cause an effect.
DOI: 10.7910/dvn/25508
title: Accidental Death and the Rule of Joint and Several Liability

description: Most U.S. states have enacted JSL reform, the move from a regime of joint and several liability (JSL) that allows plaintiffs to claim full recovery from any one of multiple defendants to one where defendants are held liable only for the harm they cause. Contrary to previous theoretical work, we show that JSL reform can increase precaution by judgment proof agent by giving “deep pockets” an incentive to reduce their own liability by bringing judgment-proof agents into court. This result can help explain our empirical findings showing that JSL reform reduces death rates (and hence increase precaution) for many types of accidents. Together, these results highlight the role that litigation costs and judgment-proof agents play in the functioning of the American tort system.
DOI: 10.7910/dvn/25680
title: 'Replication data for: Overweight and Overburdened: Race and Gender Disparities in the Incidence of the Healthcare Costs of Obesity

description: Abstract The incidence of medical costs of obesity disproportionately falls on women and racial minorities. Prior research has shown that when employers provide health insurance coverage to workers, the additional healthcare costs associated with obesity are passed through to obese workers in the form of reduced wages, relative to their non-obese counterparts. However, estimation of a population-level wage penalty of obesity obscures substantial variation in the relative impact of these wage differences by race and gender. We partition the 1979 NLSY data by race and gender, and find that while the dollar-denominated wage penalty borne by obese workers with health insurance is borne predominantly by white women, these wage offsets disproportionately impact blacks and white women when modeled as a percentage of income. Upload includes data, R code, and write-up
DOI: 10.7910/dvn/bjtomw
title: Executive Agreements Database, Statement Concerning the Agreement with Egypt Extending The Agreement Of February 26, 2003, As Extended, Regarding the Surrender Of Persons to the International Criminal Court Effected By Exchange Of Notes Act Cairo February 21 and 26, 2007 Entered Into Force February 26, 2007; Effective March 5, 2007

description: KAV 7922 cover memo
DOI: 10.7910/dvn/ccjmap
title: Novel transcendental encryption algorithm using BBP formula V1.0

description: This paper discusses a new way to encrypt data using transcendental properties discovered through mathematical Bailey–Borwein–Plouffe formula (BBP). 
In regard to pseudo-stochastic computer methods, it enables a stronger non-linear model close to True number generators (TRNG) resistance without need for physical prior transmissions of initial stochastic patterns. Soleau envelope European deposit number: DSO2017001085 - deposit reference 260819711812005332017 National Institute of Industrial Property (INPI) February 2, 2017
DOI: 10.7910/dvn/cdjlr7
title: Camera Obscura - open - 3D Models - Decimated

description: Decimated 3D models in formats: .obj (with .mtl and .jpg), .x3d (with .jpg), and .glb (glTF)

Camera obscura in the shape of a large book
Date: circa 1765
Inventory Number: 0010
Classification: Camera Obscura
Subject: optics, drawing
Attributed to: Benjamin Martin (1704 - 1782)
Cultural Region: England
Place of Origin: London
Dimensions: book closed: 14 x 62.2 x 45.7 cm (5 1/2 x 24 1/2 x 18 in.)
Material: wood, glass, felt, calf skin
Bibliography: The Apparatus of Science at Harvard, 1765-1800
Description: Camera obscura contained in a case resembling a large folio book, of wood, covered with gilt decorated calf skin. When opened, the book folds out into an open-ended box draped with with a green felt curtain. Adjustable (modern replacement) mirror, convex lens, and bellows extend from the top.

Link to catalog record in Harvard University Collection of Historical Scientific Instruments: 
http://waywiser.fas.harvard.edu/objects/3137/camera-obscura-in-the-shape-of-a-large-book
DOI: 10.7910/dvn/hqzema
title: Replication data for: Too Much Pay-Performance Sensitivity?

description: Volume 94, Issue 1
DOI: 10.7910/dvn/l30bvm
title: A16_31312.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/be6196ac-4ffa-4fa7-bbac-bed78f45526b'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/be6196ac-4ffa-4fa7-bbac-bed78f45526b
DOI: 10.7910/dvn/bma2x0
title: Cleaned 2014 Election Administration and Voting Survey Data

description: 2014 Election Administration and Voting Survey, cleaned to fill in some missing values and check for anomalies.
DOI: 10.7910/dvn/cd3kul
title: Teaching in Multi-Racial Schools
title: K-12 Educators' Telephone Survey Questionnaire

description: Version Date: 2005-11-02Version Text: Final
DOI: 10.7910/dvn/v5cgts
title: Replication Data for "Visualizing Inequality: How Graphical Emphasis Shapes Public Opinion"

description: These files allow researchers to reproduce the results included in "Visualizing Inequality: How Graphical Emphasis Shapes Public Opinion," published in Research and Politics. The Stata .do file contains code for all analysis presented in both the main text and the supplemental appendix.
DOI: 10.7910/dvn/bjnxvq
title: Preparing Data for Sharing

description: How you get your data ready depends on the format -- do you have a dataset, a video, a recording? This document contains some resources to use to manage files in various technical formats, including statistical files; video, audio and multi-media; archaeology; history; performing arts; literature, language and linguistics; visual arts; digital games; and survey data. It is freely available under a Creative Commons license. PDF format.
DOI: 10.7910/dvn/pwoak4
title: Replication Data for: Ethnic Media and the Mobilization of Identity

description: This paper studies the relationship between ethnic media, which produce content in a minority language, and the success of ethnic parties. I argue that, by embedding cultural traits in entertainment products, media outlets can shape the salience of group identity, which helps parties' mobilization efforts. I test this argument in the case of the Basque Country where, in the late phase of the Franco regime, an independent radio station operated by local clergy promoted the revival of regional language. Using contemporary, archival, and survey data, I show that exposure to ethnic radio increased support for new radical independentist parties and that the effect is driven by formerly Spanish-speaking municipalities with low historical support for Basque nationalism. I also show that radio increased bilingualism in subsequent generations and contributed to the bundling of ethnic identity revival and radical political ideology during the democratic transition.
DOI: 10.7910/dvn/byavmc
title: Replication Data for: Emigration, Social Remittances and Fiscal Policy Preferences: Experimental Evidence from Mexico.

description: How does emigration affect tax preferences in migrant-sending countries? Experiencing public services in a high tax-capacity destination may reduce support for tax increases by throwing fiscal failure at home into stark relief (the socialization hypothesis). Alternatively, migrants’ exclusion from certain public services may increase desire to fund these services in migrant origin countries (the exclusion hypothesis). We test these competing hypotheses with an online survey experiment in Mexico and explore how variation in US healthcare access influences the fiscal policy preferences of migrant households. Especially returning migrant households are more supportive of taxation when tax revenue is earmarked for healthcare, a service to which many Mexican immigrants in the US lack access. It is migrants’ exclusion from, rather than their socialization into, the fiscal contract in destination countries that influences fiscal policy preferences in their countries of origin.
DOI: 10.7910/dvn/k7aw6f
title: Fashion conversation data on Instagram

description: Our fashion dataset is composed of information about 24,752 posts by 13,350 people on Instagram. The data collection was done over a month period in January, 2015. We searched for posts mentioning 48 internationally renowned fashion brand names as hashtag. Our data contain information about hashtags as well as image features based on deep learning (Convolutional Neural Network or CNN). The list of learned features include selfies, body snaps, marketing shots, non-fashion, faces, logo, etc. Please refer to our paper for the full description of how we built our deep learning model.
description: In word file, we describe data in detail. 
This dataset will be published on ICWSM'17
DOI: 10.7910/dvn/25890
title: Bundling Health Insurance and Microfinance

description: Microfinance institutions have started to bundle their basic loans with other financial services, such as health insurance. Using a randomized control trial in Karnataka, India, we evaluate the impact on loan renewal from mandating the purchase of actuarially-fair health insurance covering hospitalization and maternity expenses. Bundling loans with insurance led to a 16 percentage points (23 percent) increase in drop-out from microfinance, as many clients preferred to give up microfinance than pay higher interest rates and receive insurance. In a Pyrrhic victory, the total absence of demand for health insurance led to there being no adverse selection in insurance enrollment.
DOI: 10.7910/dvn/25730
title: Inflated Expectations: How government partisanship shapes bureaucrats' inflation expectations

description: Governments'Â party identifications can indicate the types of economic policies they are likely to pursue. A common rule of thumb is that left-party governments are expected to pursue policies for lower unemployment, but which may cause inflation. Right-party governments are expected to pursue lower inflation policies. How do these expectations shape the inflation forecasts of monetary policy bureaucrats? If there is a mismatch between the policies bureaucrats expect governments to implement and those that they actually do, forecasts will be systematically biased. Using US Federal Reserve Staff'Âs forecasts we test for executive partisan biases. We find that irrespective of actual policy and economic conditions forecasters systematically overestimate future inflation during left-party presidencies and underestimate future inflation during right-party ones. Our findings suggest that partisan heuristics play an important part in monetary policy bureaucrats'Â inflation expectations.
DOI: 10.7910/dvn/2gefjw
title: HIS-TORIC: Extending core ICRF wave simulation to include realistic SOL plasmas

description: This paper presents a novel approach to incorporating an arbitrarily shaped edge scrape-off-layer (SOL) plasma and an ion cyclotron range of frequency (ICRF) antenna structure into existing core ICRF wave simulation models. We partition the entire computation domain into two sub-domains: a core and an edge region. Simulations in each domain are performed separately with appropriate numerical solvers. For the core, the TORIC ICRF solver [M. Brambilla, Plasma Phys. Contrl. Fusion 41, 1 (1999)] was modified to impose an essential (Dirichlet) boundary condition at its interface with the edge domain. In the edge, a finite element method (FEM) is used to solve a cold collisional plasma model. The domains are then joined together using the continuity boundary condition for the tangential electric and magnetic fields at their interfaces (Hybrid Integration of SOL to TORIC: HIS-TORIC). The model developed here was tested using an ICRH H minority heating scenario on the Alcator C-Mod tokamak [I. Hutchinson et. al., Phys. Plasmas 1, 1511 (1994)]. The simulated pattern of core wave propagation agrees well with a standard TORIC simulation. This approach opens the possibility of using a realistic diverted SOL plasma and a complicated 3D RF antenna together with a rigorous hot core plasma model, while requiring only minimal modification to existing RF codes.
description: PSFC REPORT PSFC/JA-17-3<br><br>Work supported by the U.S. Department of Energy, Office of Science, Office of Fusion Energy Sciences, using User Facility Alcator C-Mod, under Award Number DE-FC02-99ER54512 and by US DoE Contract No. DE-FC02-01ER54648 under a Scientific Discovery Through Advanced Computing Initiative.
DOI: 10.7910/dvn/blwpzn
title: Global sheep distribution in 2010 (5 minutes of arc)

description: This dataset contains the global distribution of sheep in 2010 expressed in total number of sheep per pixel (5 min of arc) according to the Gridded Livestock of the World database (GLW 3). Please go through the 1_Sh_2010_Metadata.html file for more information about this dataset and the set of included files.
DOI: 10.7910/dvn/bycsaj
title: Replication Data for: Dataset "P3Numbers_20150414_m_13_002" available at http://eegdatabase.kiv.zcu.cz/experiments-detail?DEFAULT_PARAM_ID=358

description: Guess the number is a simple P300-based brain-computer interface experiment. Its aim is to ask the measured participant to pick a number between 1 and 9. Then, he or she is exposed to corresponding visual stimuli and experimenters try to guess the number thought while observing event-related potential waveforms on-line. 250 school-age children participated in the experiments that were carried out in elementary and secondary schools in the Czech Republic. Electroencephalographic data from three EEG channels (Fz, Cz, Pz) and stimuli markers were stored. Additional metadata about the participants were collected (gender, age, the number thought by the participant, the guess of the experimenters, and various interesting additional information). The data are stored in the Brain Vision format.
description: Presentation, 18.1
description: Brain Vision Recorder, 1.20.0001
description: All data and metadata in this dataverse can be downloaded as an experimental package named "PROJECT DAYS P3 NUMBERS" that is available at https://eegdatabase.kiv.zcu.cz in section "All experiments"