cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60712/si-id316819.1
title: StrainInfo SI-ID 316819.1

description: StrainInfo dataset 316819 about a strain of Talaromyces rugulosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316855.1
title: StrainInfo SI-ID 316855.1

description: StrainInfo dataset 316855 about a strain of Streptomyces levoris. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316856.1
title: StrainInfo SI-ID 316856.1

description: StrainInfo dataset 316856 about a strain of Streptomyces rimosus subsp. rimosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316857.1
title: StrainInfo SI-ID 316857.1

description: StrainInfo dataset 316857 about a strain of Streptomyces rochei. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316858.1
title: StrainInfo SI-ID 316858.1

description: StrainInfo dataset 316858 about a strain of Streptomyces anulatus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316955.1
title: StrainInfo SI-ID 316955.1

description: StrainInfo dataset 316955 about a strain of Drechslerella stenobrocha. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.ukyrg7
title: Occurrence Download

description: A dataset containing 738 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Blumea sinuata (Lour.) Merr.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 738 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085100-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id316956.1
title: StrainInfo SI-ID 316956.1

description: StrainInfo dataset 316956 about a strain of Arthrobotrys thaumasia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316957.1
title: StrainInfo SI-ID 316957.1

description: StrainInfo dataset 316957 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316958.1
title: StrainInfo SI-ID 316958.1

description: StrainInfo dataset 316958 about a strain of Drechslerella dactyloides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316820.1
title: StrainInfo SI-ID 316820.1

description: StrainInfo dataset 316820 about a strain of Penicillium glabrum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316821.1
title: StrainInfo SI-ID 316821.1

description: StrainInfo dataset 316821 about a strain of Penicillium sclerotiorum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.atjvik
title: Occurrence Download

description: A dataset containing 3676 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Puerto Rico",
 "Geometry POLYGON((-68.12981 17.61443,-65.17777 17.61443,-65.17777 18.76573,-68.12981 18.76573,-68.12981 17.61443))",
 {
 "or" : [
 "TaxonKey is Stenoderma rufum Desmarest, 1820",
 "TaxonKey is Mormoops blainvillii Leach, 1821",
 "TaxonKey is Pteronotus parnellii (Gray, 1843)",
 "TaxonKey is Pteronotus quadridens (Gundlach, 1840)",
 "TaxonKey is Lasiurus borealis (Müller, 1776)",
 "TaxonKey is Artibeus jamaicensis Leach, 1821",
 "TaxonKey is Monophyllus Leach, 1821",
 "TaxonKey is Erophylla Miller, 1906",
 "TaxonKey is Molossus molossus (Pallas, 1766)",
 "TaxonKey is Eptesicus fuscus (Palisot de Beauvois, 1796)",
 "TaxonKey is Tadarida Rafinesque, 1814",
 "TaxonKey is Noctilio Linnaeus, 1766",
 "TaxonKey is Brachyphylla Gray, 1834"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3676 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003891-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id316859.1
title: StrainInfo SI-ID 316859.1

description: StrainInfo dataset 316859 about a strain of Streptomyces scabiei. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316860.1
title: StrainInfo SI-ID 316860.1

description: StrainInfo dataset 316860 about a strain of Streptomyces sulphureus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316861.1
title: StrainInfo SI-ID 316861.1

description: StrainInfo dataset 316861 about a strain of Streptomyces venezuelae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316862.1
title: StrainInfo SI-ID 316862.1

description: StrainInfo dataset 316862 about a strain of Streptomyces anulatus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316959.1
title: StrainInfo SI-ID 316959.1

description: StrainInfo dataset 316959 about a strain of Drechslerella coelobrocha. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316960.1
title: StrainInfo SI-ID 316960.1

description: StrainInfo dataset 316960 about a strain of Dactylellina drechsleri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316961.1
title: StrainInfo SI-ID 316961.1

description: StrainInfo dataset 316961 about a strain of Arthrobotrys sphaeroides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.xg99rc
title: Occurrence Download

description: A dataset containing 8127 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Aster ageratoides Turcz.)"
 ]
}

 The dataset includes 8127 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085102-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id317025.1
title: StrainInfo SI-ID 317025.1

description: StrainInfo dataset 317025 about a strain of Rhizopus arrhizus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316863.1
title: StrainInfo SI-ID 316863.1

description: StrainInfo dataset 316863 about a strain of Streptomyces janthinus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/1saoxg
title: Système d'Information sur la Nature et les Paysages d'Ile de France - Données du naturaliste Pierre Rivallin provenant de la base de donnée du SINP Île-de-France CETTIA

description: Jeux de données provenant de la base de données CETTIA du Système d'Information sur la Nature et les Paysages d'Ile de France. Il concerne la faune à l'exception des insectes.
DOI: 10.15468/dl.0a73bp
title: Occurrence Download

description: A dataset containing 10083 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eugenes spectabilis (Lawrence, 1867)"
 ]
}

 The dataset includes 10083 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020655-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id316864.1
title: StrainInfo SI-ID 316864.1

description: StrainInfo dataset 316864 about a strain of Streptomyces violochromogenes. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316865.1
title: StrainInfo SI-ID 316865.1

description: StrainInfo dataset 316865 about a strain of Streptomyces cellulosae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316866.1
title: StrainInfo SI-ID 316866.1

description: StrainInfo dataset 316866 about a strain of Streptomyces cellulosae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316962.1
title: StrainInfo SI-ID 316962.1

description: StrainInfo dataset 316962 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316963.1
title: StrainInfo SI-ID 316963.1

description: StrainInfo dataset 316963 about a strain of Penicillium citrinum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316964.1
title: StrainInfo SI-ID 316964.1

description: StrainInfo dataset 316964 about a strain of Penicillium chrysogenum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.6084/m9.figshare.26076415
title: Supplementary materials for PMGA

description: Plant mitochondrial genomes (PMGs) have many unique characteristics, including highly diverse genome structure, un-conserved inter-genetic regions, extensive RNA editing, and numerous horizontally transferred sequences. PMG annotators aware of these characteristics are missing, leading to inaccurate and incomplete annotation results. Here, we built a computational pipeline, "Plant Mitogenome Annotator" (PMGA), to address these challenges. PMGA had four datasets. Dataset 1 contained the coding sequences of rRNA and protein-coding genes (PCGs) of ten species. Erroneous splicing sites were corrected with RNA-seq data. Dataset 2 contained coding and protein sequences of 329 PMG. Erroneous annotations were corrected based on multiple sequence alignment. Dataset 3 contained 423 organelle’s tRNA sequences with defined origins. Dataset 4 contained plastid sequences from CPGAVAS2. In addition to annotate PCGs, rRNA genes, tRNA genes, PMGA can annotate MTPT sequences, repetitive sequences, chimeric genes, and RNA-editing sites. In particular, we developed three algorithms: "Analysis with Upstream Extended Sequences," "Assembling Exons with Weighted Direct Graph," and " Multiple Dimension Annotation of tRNA Genes" to annotate small exons, <i>trans</i>-splicing genes, and tRNA genes, respectively. We compared PMGA with three tools using the mitogenomes of <i>Arabidopsis thaliana</i> and <i>Liriodendron tulipifera</i>, we found that PMGA performed the best. Lastly, we sequenced, assembled and annotated the mitogenomes of <i>Pueraria montana var. lobata</i> and <i>Eucommia ulmoides</i>.<i> </i><i>We used the </i>RNA-seq data, PCR, and Sanger sequencing results to determine the splicing sites. Comparison of the experimental and annotation results of the splicing sites showed 100% of accuracy. An online version of PMGA can be found at http://www.1kmpg.cn/pmga/.
DOI: 10.6084/m9.figshare.26076415.v1
title: Supplementary materials for PMGA

description: Plant mitochondrial genomes (PMGs) have many unique characteristics, including highly diverse genome structure, un-conserved inter-genetic regions, extensive RNA editing, and numerous horizontally transferred sequences. PMG annotators aware of these characteristics are missing, leading to inaccurate and incomplete annotation results. Here, we built a computational pipeline, "Plant Mitogenome Annotator" (PMGA), to address these challenges. PMGA had four datasets. Dataset 1 contained the coding sequences of rRNA and protein-coding genes (PCGs) of ten species. Erroneous splicing sites were corrected with RNA-seq data. Dataset 2 contained coding and protein sequences of 329 PMG. Erroneous annotations were corrected based on multiple sequence alignment. Dataset 3 contained 423 organelle’s tRNA sequences with defined origins. Dataset 4 contained plastid sequences from CPGAVAS2. In addition to annotate PCGs, rRNA genes, tRNA genes, PMGA can annotate MTPT sequences, repetitive sequences, chimeric genes, and RNA-editing sites. In particular, we developed three algorithms: "Analysis with Upstream Extended Sequences," "Assembling Exons with Weighted Direct Graph," and " Multiple Dimension Annotation of tRNA Genes" to annotate small exons, <i>trans</i>-splicing genes, and tRNA genes, respectively. We compared PMGA with three tools using the mitogenomes of <i>Arabidopsis thaliana</i> and <i>Liriodendron tulipifera</i>, we found that PMGA performed the best. Lastly, we sequenced, assembled and annotated the mitogenomes of <i>Pueraria montana var. lobata</i> and <i>Eucommia ulmoides</i>.<i> </i><i>We used the </i>RNA-seq data, PCR, and Sanger sequencing results to determine the splicing sites. Comparison of the experimental and annotation results of the splicing sites showed 100% of accuracy. An online version of PMGA can be found at http://www.1kmpg.cn/pmga/.
DOI: 10.60712/si-id316965.1
title: StrainInfo SI-ID 316965.1

description: StrainInfo dataset 316965 about a strain of Penicillium chrysogenum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id317026.1
title: StrainInfo SI-ID 317026.1

description: StrainInfo dataset 317026 about a strain of Rhizopus microsporus var. chinensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id317027.1
title: StrainInfo SI-ID 317027.1

description: StrainInfo dataset 317027 about a strain of Rhizopus arrhizus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id317028.1
title: StrainInfo SI-ID 317028.1

description: StrainInfo dataset 317028 about a strain of Rhizopus stolonifer var. lyococcos. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id317029.1
title: StrainInfo SI-ID 317029.1

description: StrainInfo dataset 317029 about a strain of Rhizopus arrhizus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316867.1
title: StrainInfo SI-ID 316867.1

description: StrainInfo dataset 316867 about a strain of Streptomyces globisporus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316868.1
title: StrainInfo SI-ID 316868.1

description: StrainInfo dataset 316868 about a strain of Streptomyces globisporus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.tj4pkt
title: Occurrence Download

description: A dataset containing 533 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panicum urvilleanum Kunth"
 ]
}

 The dataset includes 533 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004405-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id316869.1
title: StrainInfo SI-ID 316869.1

description: StrainInfo dataset 316869 about a strain of Streptomyces globisporus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316966.1
title: StrainInfo SI-ID 316966.1

description: StrainInfo dataset 316966 about a strain of Talaromyces minioluteus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316967.1
title: StrainInfo SI-ID 316967.1

description: StrainInfo dataset 316967 about a strain of Penicillium italicum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.njrbj5
title: Occurrence Download

description: A dataset containing 2726 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella remotifolia Spring"
 ]
}

 The dataset includes 2726 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096234-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id316968.1
title: StrainInfo SI-ID 316968.1

description: StrainInfo dataset 316968 about a strain of Penicillium decumbens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id317030.1
title: StrainInfo SI-ID 317030.1

description: StrainInfo dataset 317030 about a strain of Rhizopus arrhizus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id317031.1
title: StrainInfo SI-ID 317031.1

description: StrainInfo dataset 317031 about a strain of Rhizopus japonicus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id317032.1
title: StrainInfo SI-ID 317032.1

description: StrainInfo dataset 317032 about a strain of Rhizopus japonicus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316870.1
title: StrainInfo SI-ID 316870.1

description: StrainInfo dataset 316870 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316871.1
title: StrainInfo SI-ID 316871.1

description: StrainInfo dataset 316871 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316872.1
title: StrainInfo SI-ID 316872.1

description: StrainInfo dataset 316872 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id316969.1
title: StrainInfo SI-ID 316969.1

description: StrainInfo dataset 316969 about a strain of Penicillium decumbens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.