cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22604069.v1
title: Additional file 5 of DNA methylome and transcriptome identified Key genes and pathways involved in Speckled Eggshell formation in aged laying hens

description: Additional file 5: Supplementary Table 5. Summary statistics for WGBS alignment and methylation information of eggshell gland.
DOI: 10.6084/m9.figshare.22604063.v1
title: Additional file 3 of DNA methylome and transcriptome identified Key genes and pathways involved in Speckled Eggshell formation in aged laying hens

description: Additional file 3: Supplementary Table 3. Summary statistics for transcriptome sequence quality and alignment information of eggshell gland.
DOI: 10.6084/m9.figshare.7927571
title: Additional file 1: of Motor cortex stimulation: a systematic literature-based analysis of effectiveness and case series experience

description: Raw data. Brief description of the data: Raw data from each included article (XLSX 20 kb)
DOI: 10.6084/m9.figshare.22606327
title: Additional file 17 of Iris lactea var. chinensis plant drought tolerance depends on the response of proline metabolism, transcription factors, transporters and the ROS-scavenging system

description: Additional file 17.
DOI: 10.6084/m9.figshare.7927628.v1
title: Additional file 5: of Comparative genomics and transcriptomics analysis reveals evolution patterns of selection in the Salix phylogeny

description: Sequences of resistance genes in Genus Salix. (FA 26 kb)
DOI: 10.18128/m130-015.2024-02
title: Politics-county presidential results

description: The county presidential election results measure provides the proportion of votes cast for the Democratic candidate or the Republican candidate in the presidential elections from 2000-2020.
DOI: 10.6084/m9.figshare.7927646
title: MOESM1 of GSTM1 and GSTT1 null genotype increase the risk of hepatocellular carcinoma: evidence based on 46 studies

description: Additional file 1: Table S1. The evaluation of the data quality in this meta-analysis.
DOI: 10.6084/m9.figshare.7927655
title: MOESM2 of GSTM1 and GSTT1 null genotype increase the risk of hepatocellular carcinoma: evidence based on 46 studies

description: Additional file 2: Table S2. The detailed characteristics of the included studies in this meta-analysis.
DOI: 10.6084/m9.figshare.7927616.v1
title: Additional file 3: of Comparative genomics and transcriptomics analysis reveals evolution patterns of selection in the Salix phylogeny

description: Sequences of shared orthologues in 10 Salicaceae species. (FA 1803 kb)
DOI: 10.6084/m9.figshare.12121794.v1
title: Additional file 1 of Combined lateral peripatellar and posteromedial approaches for Schatzker type IV tibial plateau fractures involving posteromedial plane: a prospective study

description: Additional file 1.
DOI: 10.6084/m9.figshare.7927628
title: Additional file 5: of Comparative genomics and transcriptomics analysis reveals evolution patterns of selection in the Salix phylogeny

description: Sequences of resistance genes in Genus Salix. (FA 26 kb)
DOI: 10.18128/m130-014.2024-02
title: Politics-state-state presidential results

description: The state presidential election results measure provides the proportion of votes cast for the Democratic candidate or the Republican candidate in the presidential elections from 1976-2020.
DOI: 10.6084/m9.figshare.10033175
title: Identification of key genes, regulatory factors, and drug target genes of recurrent implantation failure (RIF)

description: <b>Objective:</b> Recurrent implantation failure (RIF) exacerbates the physical trauma of infertile women that undergone in <i>vitro</i> fertilization-embryo transfer (IVF-ET). We aimed to identify the key genes, regulatory factors, and drug target genes involved in the RIF. <b>Methods:</b> The dataset GSE58144 that obtained from the Gene Expression Omnibus mainly contained 43 RIF and 72 control endometrial samples. Differently expressed genes (DEGs) between RIF and control groups were firstly analyzed, followed by the pathway and Gene Ontology (GO) enrichment analysis. Then, protein-protein interaction (PPI) network and miRNA-transcript factor (TF)-DEGs network were established. Finally, a drug-target interaction network was constructed. <b>Results:</b> A total of 399 DEGs were identified between the RIF and controls. In the PPI and key module network, <i>UBE2I</i>, <i>PLK4</i>, <i>XPO1</i>, <i>AURKB</i>, and <i>NUP107</i> were identified as the hub genes, which mainly enriched in RNA transport and cell division cycle-related pathways and GO items. In the miRNA-TF-DEGs network, E2F4, SIN3A, miRNA489, miRNA199A, miRNA369-3P, miRNA422, and miRNA522 were considered as the key regulatory factors during RIF. In addition, HTR1A, NR3C1, and GABRA3 were the main targets of the drugs annotated in DrugBank. <b>Conclusion:</b> The effects of PLK4, XPO1, AURKB, and NUP107 on the RIF may be via affecting the proliferation and differentiation of endometrial stromal cells. Besides, SIN3A and miRNA199A may be crucial for embryo implantation. In addition, NR3C1 may be used as a possible target for the clinical therapy of RIF.
DOI: 10.6084/m9.figshare.10033175.v1
title: Identification of key genes, regulatory factors, and drug target genes of recurrent implantation failure (RIF)

description: <b>Objective:</b> Recurrent implantation failure (RIF) exacerbates the physical trauma of infertile women that undergone in <i>vitro</i> fertilization-embryo transfer (IVF-ET). We aimed to identify the key genes, regulatory factors, and drug target genes involved in the RIF. <b>Methods:</b> The dataset GSE58144 that obtained from the Gene Expression Omnibus mainly contained 43 RIF and 72 control endometrial samples. Differently expressed genes (DEGs) between RIF and control groups were firstly analyzed, followed by the pathway and Gene Ontology (GO) enrichment analysis. Then, protein-protein interaction (PPI) network and miRNA-transcript factor (TF)-DEGs network were established. Finally, a drug-target interaction network was constructed. <b>Results:</b> A total of 399 DEGs were identified between the RIF and controls. In the PPI and key module network, <i>UBE2I</i>, <i>PLK4</i>, <i>XPO1</i>, <i>AURKB</i>, and <i>NUP107</i> were identified as the hub genes, which mainly enriched in RNA transport and cell division cycle-related pathways and GO items. In the miRNA-TF-DEGs network, E2F4, SIN3A, miRNA489, miRNA199A, miRNA369-3P, miRNA422, and miRNA522 were considered as the key regulatory factors during RIF. In addition, HTR1A, NR3C1, and GABRA3 were the main targets of the drugs annotated in DrugBank. <b>Conclusion:</b> The effects of PLK4, XPO1, AURKB, and NUP107 on the RIF may be via affecting the proliferation and differentiation of endometrial stromal cells. Besides, SIN3A and miRNA199A may be crucial for embryo implantation. In addition, NR3C1 may be used as a possible target for the clinical therapy of RIF.
DOI: 10.6084/m9.figshare.7927694.v1
title: Additional file 2: of Rare RNF213 variants and the risk of intracranial artery stenosis/occlusion disease in Chinese population: a case-control study

description: Table S1. Rare variants of RNF213 identified in worldwide MMD patients. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7927580.v1
title: Additional file 1: of Conditioned stimulus presentations alter anxiety level in fear-conditioned mice

description: Other parameters on EPM test. Table S1. Other parameters in EPM during CS presentation. Table S2. Other parameters in EPM about the effect of diazepam on innate anxiety of fear-conditioned mice. Table S3. Other parameters in EPM in diazepam group on anxiety measurements during CS presentation. Table S4. Other parameters in EPM in saline group on anxiety measurements during CS presentation. Table S5. Other parameters in EPM compare saline with diazepam on anxiety measurements during CS presentation. *, p &lt; 0.05; **, p &lt; 0.01; ***, p &lt; 0.001. Data were analyzed by One-way or Two-way RM ANOVA with Bonferroni post-test. (XLS 31 kb)
DOI: 10.6084/m9.figshare.7927598.v1
title: Additional file 1: of Weighted correlation network and differential expression analyses identify candidate genes associated with BRAF gene in melanoma

description: Figures S1-S3. Rows represent expression of 17 genes in melanoma samples (first), TCGA/GTEx (second), and TCGA (third), where genes were aligned by column. As the NCRNA00312 gene could not be retrieved, expression and survival results could not be obtained in GEPIA. Significance was determined as described in the caption of Fig. 6. (ZIP 3130 kb)
DOI: 10.6084/m9.figshare.21559186
title: Additional file 1 of Chronic constriction injury-induced changes in circular RNA expression profiling of the dorsal root ganglion in a rat model of neuropathic pain

description: Additional file 1: Table S1. List of DNA primer sequences designed for qPCR.
DOI: 10.18128/m130-013.2024-02
title: Racism-county-residential segregation-index of dissimilarity

description: Residential segregation measures the physical separation of population groups into different areas (i.e., neighborhoods) in a geographic unit (i.e., a county or city). We report the index of dissmilarity(D) for United States counties in our data file. The index of dissimilarity is a measure of evenness and measures the proportion of a group's population that must move so that each sub-county geographic unit in a county has the same proportion of that group as the county. We use census tracts as our sub-county geographic unit because census tracts nest within counties. D is typically calculated using two population groups. We have computed the index of dissimilarity for the following groups: (1) White alone, not Hispanic or Latino : Black alone, (2) White alone, not Hispanic or Latino : Asian alone, (3) White alone, not Hispanic or Latino : Hispanic or Latino.
DOI: 10.6084/m9.figshare.21559186.v1
title: Additional file 1 of Chronic constriction injury-induced changes in circular RNA expression profiling of the dorsal root ganglion in a rat model of neuropathic pain

description: Additional file 1: Table S1. List of DNA primer sequences designed for qPCR.
DOI: 10.6084/m9.figshare.7927616
title: Additional file 3: of Comparative genomics and transcriptomics analysis reveals evolution patterns of selection in the Salix phylogeny

description: Sequences of shared orthologues in 10 Salicaceae species. (FA 1803 kb)
DOI: 10.18128/m130-012.2024-02
title: Racism-county-income inequity

description: Income inequity is measured using the index of concentration at the extremes (ICE). ICE is a measure of social polarization within a particular geographic unit. It shows whether people or households in a geographic unit are concentrated in privileged or deprived extremes. Our privileged group is the number of households with a householder identifying as White alone, not Hispanic or Latino, with an income equal to or greater than 100,000. Our deprived group is the number of households with a householder identifying as a different race/ethnic group (e.g., Black alone, Asian alone, Hispanic or Latino), with an income equal to or less than 25,000. We have computed the income inequity measure for the following groups: (1) White alone, not Hispanic or Latino : Black alone, (2) White alone, not Hispanic or Latino : Asian alone, (3) White alone, not Hispanic or Latino : Hispanic or Latino.
DOI: 10.6084/m9.figshare.21559189.v1
title: Additional file 2 of Chronic constriction injury-induced changes in circular RNA expression profiling of the dorsal root ganglion in a rat model of neuropathic pain

description: Additional file 2: Table S2. List of total circRNAs detected in the DRG of NC and CCI rats. RNA-seq was performed to profile circRNA expression in four paired DRG samples. A total of 13,172 circRNAs were detected in the L4–L5 DRG samples from the CCI and NC groups (4 mice per group).
DOI: 10.48544/1a26b65d-c683-4de8-8066-b7a8e2152739
title: How to use Data to Increase Bike Use by Travellers
DOI: 10.6084/m9.figshare.22607614
title: Additional file 3 of Parvimonas micra activates the Ras/ERK/c-Fos pathway by upregulating miR-218-5p to promote colorectal cancer progression

description: Additional file 3.
DOI: 10.6084/m9.figshare.22607617.v1
title: Additional file 4 of Parvimonas micra activates the Ras/ERK/c-Fos pathway by upregulating miR-218-5p to promote colorectal cancer progression

description: Additional file 4.
DOI: 10.48544/3178f4a8-e02f-45f8-b947-e9de9059c12e
title: Comparison of BPM maturity and performance of the Dutch department of defence with other sectors.
DOI: 10.3886/e198171
title: Instagram

description: The database contain the varaibles used for the described research.
DOI: 10.3886/e198171v1
title: Instagram

description: The database contain the varaibles used for the described research.
DOI: 10.6084/m9.figshare.7927571.v1
title: Additional file 1: of Motor cortex stimulation: a systematic literature-based analysis of effectiveness and case series experience

description: Raw data. Brief description of the data: Raw data from each included article (XLSX 20 kb)
DOI: 10.5281/zenodo.10630051
title: Example GROMACS membrane protein system for H5MD/SZ3 compression testing

description: Read the README.txt file for more information.
DOI: 10.5281/zenodo.10630052
title: Example GROMACS membrane protein system for H5MD/SZ3 compression testing

description: Read the README.txt file for more information.
DOI: 10.6084/m9.figshare.22607620.v1
title: Additional file 5 of Parvimonas micra activates the Ras/ERK/c-Fos pathway by upregulating miR-218-5p to promote colorectal cancer progression

description: Additional file 5.
DOI: 10.6084/m9.figshare.21559198
title: Additional file 4 of Chronic constriction injury-induced changes in circular RNA expression profiling of the dorsal root ganglion in a rat model of neuropathic pain

description: Additional file 4: Table S4. List of circRNAs and miRNA predicted by using miRanda and TargetScan. Potential connections between circRNAs and microRNAs were predicted by using TargetScan and miRanda, and the interaction results were displayed by Cytoscape. All the circRNAs and miRNAs were listed.
DOI: 10.6084/m9.figshare.22607704.v1
title: Additional file 1 of Quantitative proteomics analysis revealed the potential role of lncRNA Ftx in cardiomyocytes

description: Additional file 1.
DOI: 10.6084/m9.figshare.20510559.v1
title: Parent–Child communication about concussion: what role can the centers for disease control and prevention’s HEADS UP concussion in youth sports handouts play?

description: Concussion education for parents/guardians (hereafter referred to as parents) has the potential to play an important role in youth athlete concussion safety. The goal of this study was to evaluate the impact of the Centers for Disease Control and Prevention’s (CDC) HEADS UP handout on parent–child communication about concussion. YMCA branches from 15 associations from across the United States were randomized to CDC HEADS UP intervention condition or education as usual control condition using a cluster randomization strategy. In the intervention condition, coaches shared parent- and athlete-specific handouts with parents and asked parents to share and discuss the athlete-specific handouts with their child. Generalized estimating equations, with repeated measures to account for the correlation among matched participants and YMCA associations, were employed. Multivariable analyses exploring the relationship between time (pre- and post-intervention) and communication showed that the percent of parents who talked to their child about concussion increased in the intervention group (aRR=1.33, 95% CI=1.22, 1.44), but not in the control group. CDC HEADS UP handouts help families talk about concussion safety. Sports organizations seeking to educate parents of athletes about concussion should consider using CDC HEADS UP handouts and following a similar dissemination strategy.
DOI: 10.6084/m9.figshare.22607710
title: Additional file 3 of Quantitative proteomics analysis revealed the potential role of lncRNA Ftx in cardiomyocytes

description: Additional file 3.
DOI: 10.6084/m9.figshare.22607713
title: Additional file 4 of Quantitative proteomics analysis revealed the potential role of lncRNA Ftx in cardiomyocytes

description: Additional file 4.
DOI: 10.6084/m9.figshare.7927655.v1
title: MOESM2 of GSTM1 and GSTT1 null genotype increase the risk of hepatocellular carcinoma: evidence based on 46 studies

description: Additional file 2: Table S2. The detailed characteristics of the included studies in this meta-analysis.
DOI: 10.6084/m9.figshare.22607611
title: Additional file 2 of Parvimonas micra activates the Ras/ERK/c-Fos pathway by upregulating miR-218-5p to promote colorectal cancer progression

description: Additional file 2.
DOI: 10.6084/m9.figshare.7927694
title: Additional file 2: of Rare RNF213 variants and the risk of intracranial artery stenosis/occlusion disease in Chinese population: a case-control study

description: Table S1. Rare variants of RNF213 identified in worldwide MMD patients. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.22604585
title: Additional file 4 of Zearalenone disturbs the reproductive-immune axis in pigs: the role of gut microbial metabolites

description: Additional file 4: Supp Table S3-1. List of differentially expressed genes (DEGs) between control (Ctrl) and zearalenone (ZEN) treatment group in pre-starter pig’s uterus, thymus, spleen, liver and inguinal lymph nodes. Supp Table S3-2. List of DEGs between Ctrl and ZEN treatment group in starter pig’s uterus, thymus, spleen, liver, inguinal lymph nodes and ovary. Supp Table S3-3. GO classification and enrichment of overlapping up-regulated genes between pre-starter and starter pig’s uterus. Supp Table S3-4. GO classification and enrichment of overlapping down-regulated genes between pre-starter and starter pig’s uterus. Supp Table S3-5. MGI phenotypes and Human diseases of genes (UP and DOWN) enriched by GO enrichment in pre-starter pig’s uterus. Supp Table S3-6. KEGG pathway enrichment of DEGs between Ctrl and ZEN treatment group in pre-starter pig’s uterus, thymus, spleen, liver and inguinal lymph nodes. Supp Table S3-7. KEGG pathway enrichment of DEGs between Ctrl and ZEN treatment group in starter pig’s uterus, thymus, spleen, liver and inguinal lymph nodes. Supp Table S3-8. List of DEGs involving immune diseases & system on the top 30 KEGG pathways in pre-starter and starter pig’s uterus. Supp Table S3-9. List of DEGs enriched in each overlapping KEGG pathways (top 30) between pre-starter and starter pig’s thymus, spleen, liver and inguinal lymph nodes. Supp Table S3-10. KEGG pathway enrichment of overlapping up-regulated genes in pre-starter and starter pig’s uterus. Supp Table S3-11. KEGG pathway enrichment of overlapping down-regulated genes in pre-starter and starter pig’s uterus. Supp Table S3-12. GO enrichment of DEGs between Ctrl and ZEN treatment group in pre-starter and starter pig’s uterus. Supp Table S3-13. List of genes for expression pattern analysis in starter pig’s uterus and thymus. Supp Table S3-14. KEGG pathway enrichment of genes enriched in profile 2 of expression pattern analysis in starter pig’s uterus and thymus. Supp Table S3-15. GO enrichment of genes enriched in profile 2 of expression pattern analysis in starter pig’s uterus and thymus. Supp Table S3-16. GO enrichment of up-regulated and down-regulated genes between Ctrl and ZEN treatment group in starter pig’s ovary. Supp Table S3-17. GO classification and enrichment of DEGs between Ctrl and ZEN treatment group in starter pig’s overy.
DOI: 10.6084/m9.figshare.21559243
title: Additional file 14 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 14 Table S13. KEGG annotation of selective sweep regions in the upland XI rice.
DOI: 10.6084/m9.figshare.22607719.v1
title: Additional file 6 of Quantitative proteomics analysis revealed the potential role of lncRNA Ftx in cardiomyocytes

description: Additional file 6.
DOI: 10.6084/m9.figshare.21559246
title: Additional file 15 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 15 Table S14. KEGG annotation of selective sweep regions in the upland GJ rice.
DOI: 10.6084/m9.figshare.21559246.v1
title: Additional file 15 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 15 Table S14. KEGG annotation of selective sweep regions in the upland GJ rice.
DOI: 10.6084/m9.figshare.21559249
title: Additional file 16 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 16 Table S15. Genome-wide detection and functional annotation of selective sweep regions in the irrigated XI rice.
DOI: 10.6084/m9.figshare.21559252
title: Additional file 17 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 17 Table S16. Genome-wide detection and functional annotation of selective sweep regions in the irrigated GJ rice.
DOI: 10.6084/m9.figshare.21559234.v1
title: Additional file 11 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 11 Table S10. Genome-wide detection and functional annotation of selective sweep regions in the upland XI rice.
DOI: 10.6084/m9.figshare.21559240
title: Additional file 13 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 13 Table S12. KEGG annotation of selective sweep regions in the deepwater rice (DW).
DOI: 10.6084/m9.figshare.21559189
title: Additional file 2 of Chronic constriction injury-induced changes in circular RNA expression profiling of the dorsal root ganglion in a rat model of neuropathic pain

description: Additional file 2: Table S2. List of total circRNAs detected in the DRG of NC and CCI rats. RNA-seq was performed to profile circRNA expression in four paired DRG samples. A total of 13,172 circRNAs were detected in the L4–L5 DRG samples from the CCI and NC groups (4 mice per group).
DOI: 10.6084/m9.figshare.7927604
title: Additional file 1: of Comparative genomics and transcriptomics analysis reveals evolution patterns of selection in the Salix phylogeny

description: Table S1. Main geographic distributions of 9 Salix used in this work. Table S2. Geographic distributions of main species in Sect. Psilostigmatae. Table S3. GO annotation of shared orthologues in 10 Salicaceae species. Table S4. Information of resistance genes involved in positive selection in Genus Salix. (XLS 60 kb)
DOI: 10.6084/m9.figshare.21559240.v1
title: Additional file 13 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 13 Table S12. KEGG annotation of selective sweep regions in the deepwater rice (DW).
DOI: 10.6084/m9.figshare.21559243.v1
title: Additional file 14 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 14 Table S13. KEGG annotation of selective sweep regions in the upland XI rice.
DOI: 10.6084/m9.figshare.21559249.v1
title: Additional file 16 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 16 Table S15. Genome-wide detection and functional annotation of selective sweep regions in the irrigated XI rice.
DOI: 10.6084/m9.figshare.21559261
title: Additional file 1 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 1 Table S1. Information about samples used in this study.
DOI: 10.6084/m9.figshare.21559255.v1
title: Additional file 18 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 18 Table S17. Ratio of RPKM within the 200-kb selective sweep region on chromosome 11.