cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27542976.v4
title: Refuge-Seeking Experiment Data

description: Zone 1-3: The results output from AnimalTA (Chiara & Kim, 2023) describing various characteristics of individual fish position in each zone of the experimental tank as temperature increased.Individuals: The results output from AnimalTA (Chiara & Kim, 2023) describing various characteristics of individual fish position in the experimental tank as temperature increased.InterInd_Dist: The inter-individual distances provided by AnimalTA of five fish as temperature increased.Zone_Prop: The proportional time spent in each zone as temperature increased.Temperature: The recorded temperature for each zone every minute.Trs_Behaviour: The temperature where behavioural endpoints occurred during the Trs experimental trials.<br>Chiara, V., & Kim, S.-Y. (2023). AnimalTA: A highly flexible and easy-to-use program for tracking and analysing animal movement in different environments. Methods in Ecology and Evolution, 14, 1699– 1707. https://doi.org/10.1111/2041-210X.14115.
DOI: 10.6084/m9.figshare.28686020.v1
title: Does water-energy dynamics drive plant species richness patterns on the high alpine Tibetan plateau?

description: Data for water energy dynamics manuscript
DOI: 10.6084/m9.figshare.5241424.v1
title: Erratum: Expression of the <b><i>Slc12a1</i></b> Gene in Pancreatic β-cells: Molecular Characterization and <b><i>in silico</i></b> Analysis

description: The solute carrier protein family 12 group A, member one (<i>Slc12a1</i>) and two (<i>Slc12a2</i>) encode several splice variants of the kidney-specific and the ubiquitous isoforms, respectively, of the bumetanide (BTD)-sensitive Na-dependent K2Cl co-transporter. The <i>Slc12a2 </i>co-transporter is involved in the maintenance of a high intracellular chloride concentration [Cl<sup>–</sup>]<sub>i </sub>in β-cells and its inhibition with BTD blocks glucose-induced insulin secretion. In β-cells, [Cl<sup>–</sup>]<sub>i </sub>plays an important role in glucose-induced depolarization and insulin secretion. Glucose promotes electrogenic efflux of Cl<sup>–</sup>contributing to β-cell's electrical and secretory activity. To identify the expression pattern of <i>Slc12a1 </i>and <i>Slc12a2 </i>genes in β-cells we have used RT-PCR, Western blotting and immunolocalization studies in mouse pancreatic islets, β-cell lines and rat tissues. Our results demonstrate expression of specific splice variants of <i>Slc12a1 </i>and <i>Slc12a2 </i>transcripts in β-cells <i>i.e.</i>, variants 1 of <i>Slc12a1 </i>(NKCC2A) and S<i>lc12a2 </i>(NKCC1<i>a</i>). Molecular cloning and characterization of <i>Slc12a1 </i>variant 1 transcripts from β-cells revealed an alternative splicing event involving the 5'-UTR region. NKCC2A expression at the protein level in islets and β-cells was confirmed by immunoblotting and immunolocalization. Further, NKCC2A, NKCC1<i>a </i>and pro-insulin co-localized in β-cells but not in the exocrine pancreas. Therefore, our results provide for the first time evidence of NKCC2A expression in pancreatic β-cells where it may play a role in insulin secretion.
DOI: 10.6084/m9.figshare.8066663.v2
title: Tuberculosis treatment dataset

description: TB treatments in the state of São Paulo collected between 2006 and 2016. Data were obtained through TBWEB, a system used for reporting and monitoring TB cases by the government in the state of São Paulo.
DOI: 10.17632/2mwc6x6kwb
title: XAI4HEAT SCADA Dataset 2024

description: Real-world heating data were extracted from the SCADA system of a local District Heating System (DHS) at the Faculty of Mechanical Engineering in Niš, Serbia. The dataset includes one-hour resolution parameters from five substations in residential buildings over five heating seasons, capturing temperatures of the heating fluid in supply and return lines, energy transmission metrics, and outdoor temperatures. It enables research on explainable intelligent control of DHS, focusing on heat demand response and load shifting to optimize performance and sustainability. Additionally, it enhances transparency in urban heat consumption through Explainable AI, offering interpretable insights into heat supply variations and facilitating what-if analyses for stakeholders.
DOI: 10.17632/5xtjdzxz84
title: Data for: Differentiation of ripe and unripe fruit flour using mineral composition data—Statistical assessment

description: Raw data
DOI: 10.6084/m9.figshare.1029421.v1
title: Current source density reconstructions

description: Current source density reconstructions created in Curry based on simulated sources.
DOI: 10.6084/m9.figshare.13055861.v1
title: Peaklist_167_DHB

description: Peak list for the MSI dataset MALDI_DHBmetabolites. First column contains extracted <i>m/z</i>-values and second column contains the metabolite and lipid identification for some of the <i>m/z</i>-values.<br>
DOI: 10.6084/m9.figshare.21624159.v1
title: Genome sequences and gene anntation of Quercus dentata

description: <em>Quercus dentata</em> Thunb., a dominant forest tree species in northern China, has significant ecological and ornamental value due to its adaptability and beautiful autumn coloration, with color changes from green to yellow into red resulting from the autumnal shifts in leaf pigmentation. However, the key genes and molecular regulatory mechanisms for leaf color transition remain to be investigated. First, we presented a high-quality chromosome-scale assembly for <em>Q. dentata</em>. This 893.54 Mb sized genome (contig N50=4.21 Mb, scaffold N50=75.55 Mb; 2n=24) harbors 31,584 protein-coding genes. Second, our metabolome analyses uncovered pelargonidin-3-O-glucoside, cyanidin-3-O-arabinoside, and cyanidin-3-O-glucoside as the main pigments involved in leaf color transition. Third, gene co-expression further identified the MYB-bHLH-WD40 (MBW) transcription activation complex as central to anthocyanin biosynthesis regulation. Notably, transcription factor (TF) <em>QdNAC </em>(<em>QD08G038820</em>) was highly co-expressed with this MBW complex and may regulate anthocyanin accumulation and chlorophyll degradation during leaf senescence through direct interaction with another TF, <em>QdMYB </em>(<em>QD01G020890</em>), as revealed by our further protein-protein and DNA-protein interaction assays. Our high-quality genome assembly, metabolome and transcriptome resources further enrich <em>Quercus </em>genomics, and will facilitate upcoming exploration of ornamental values and environmental adaptability in this important genus.
DOI: 10.6084/m9.figshare.25815880.v3
title: Origin data of Manuscript "Multi-Phase Mobilization and Degradation Pathway of Natural Organic Matter within Alluvial-Lacustrine Aquifer Sediments".

description: Raw and reprocessed data of manuscript "Multi-Phase Mobilization and Degradation Pathway of Natural Organic Matter within Alluvial-Lacustrine Aquifer Sediments".IncludingDOM EEM raw data.FT-ICR-MS DOM compound group data.Particle size distribution results.Porewater extraction results.Figure data.Reprocessed data.FT-ICR-MS raw data are removed to reduce file size (for easy reusing), and will be available on request.Additional QA&QC are performed.Please find the published manuscript in Journal of Hydrology at 10.1016/j.jhydrol.2025.133310
DOI: 10.6084/m9.figshare.28702220.v3
title: ICMLRebuttal.pdf

description: ICML Rebuttal
DOI: 10.6084/m9.figshare.9466577.v1
title: Data Repository Keto PCR.xlsx

description: GABA and Glutamate-related gene expression in dentate gyrus, CA1 and CA3.
DOI: 10.6084/m9.figshare.12199721.v1
title: raw data for Genotyping

description: Gel image used in Figure 1<br>Genomic DNA from human iPSCs amplified for the APOE locus, then digested with HhaI enzyme. Run on 3% agarose gel.<br>Genotype of the cell line used in this study was compared to that of another cell line maintained in the lab that was known to be homozygous for APOE3.<br>Genotyping method based on Henderson et al. (2002).Henderson, J.N., Crook, R., Crook, J., et al. 2002. Apolipoprotein E4 and tau allele frequencies among Choctaw Indians. <i>Neuroscience Letters</i> 324(1), pp. 77–79.
DOI: 10.6084/m9.figshare.12370307.v1
title: New Zealand pollen

description: Dataset first used in the paper <i>Precise automatic classification of 46 different pollen types with convolutional neural networks</i> [0].<br><br>The images are dark field microscope images captured on the Classifynder system. The Classifynder (formerly knownas AutoStage) is documented in [1]. It was designed as a complete ’standalone’ system for automated pollen analysis. The system uses basic shape features to identify the locations of objects of interest (i.e. pollen grains) in conventional microscope slides under a low-power objective. It then switches to a higher power objective and visits the location of each pollen object to capture an image of it to be used for classification.<br>Objects are imaged at different focus levels, producing a ’Z-stack’. The system subsets the best-focused portions of each object Z-stack images, and then combines them to<br>produce a single composite image, followed by segmentation from the background. This image is then falsely colored to show depth.<br>[0] http://doi.org/10.1371/journal.pone.0229751[1] http://www.sciencedirect.com/science/article/pii/S0034666711001205
DOI: 10.6084/m9.figshare.23244059.v4
title: <strong>Prevalence of Pre-operative Anxiety and associated risk factors among Patients awaiting Elective Surgery in a Tertiary Care Hospital</strong>

description: The objective of this study was to find out the prevalence of pre-operative anxiety and its associated risk factors in a hospital setting.
DOI: 10.6084/m9.figshare.25992034.v2
title: OTU tables, Metadata, Taxonomy files

description: OTU tables, Taxonomy and Metadata files for <i>nifH</i> gene and 16S rRNA gene that were used in the analysis are uploaded.
DOI: 10.6084/m9.figshare.27871737.v1
title: Datos crudos completos .xlsx

description: Microplastics (&lt;5 mm) are widespread across the world oceans, affecting a wide variety of organisms, including corals, which experience reduced growth, calcification, bleaching, and tissue necrosis when exposed to these contaminants. Microplastics are categorized as either primary or secondary, with the latter being more prevalent. In marine environments, microplastics can form biofilms that serve as vectors for pathogenic microorganisms and pollutants. While the impacts of microplastics on adult corals have been widely studied, primarily focusing on primary microplastics without biofilm, research on their effects on early coral life stages is limited. This study assessed: 1) The impact of varying concentrations of secondary microplastics on the early development of the coral Orbicella faveolata, 2) The effects of secondary microplastics (fibers and fragments) at different concentrations on larval settlement in the coral Acropora palmata ,and 3) The influence of fragments, with and without biofilms, of different sizes and concentrations on larval settlement in the coral Favia fragum. In O. faveolata, fertilization, embryonic development, and larval settlement were affected by fragments, with embryonic development showing the greatest impact, experiencing an average 25.9% reduction in the presence of microplastics. Larval development was unaffected by any microplastic type, but post-settlement survival decreased by an average of 35.8% due to exposure to fibers and fragments. In A. palmata, settlement was impacted by fragments, while in F. fragum, only fragments sized 2–4 mm reduced settlement rates.
DOI: 10.6084/m9.figshare.3123100.v2
title: Data from: Response of migrating raptors to an increasing number of wind farms

description: Data associated to the manuscript with the same name. Dataset containing 1) total bird count per day during six consecutive autumn migratory seasons, 2) polar coordinates of soaring birds flight trajectories obtained through observations with marine radar, and 3) wind direction measured during the same six autumn seasons.<br><br><br>
DOI: 10.6084/m9.figshare.5669764.v1
title: Supplementary Material for: In vivo Effects of Repeated Thyronamine Administration in Male C57BL/6J Mice

description: <b><i>Objectives:</i></b> Thyronamines are decarboxylated and deiodinated metabolites of thyroid hormones (THs). Of all possible thyronamine variants, only 3-iodothyronamine (3-T<sub>1</sub>AM) and iodine-free thyronamine (T<sub>0</sub>AM) have been detected in vivo. While intensive research has been done on the (patho-)physiological action of 3-T<sub>1</sub>AM, the role of T<sub>0</sub>AM has been studied less intensively. <b><i>Study Design:</i></b> We determined whether a single pharmacological dose (50 mg/kg, i.p.) or repeated administration (5 mg/kg/day, i.p., for 7 days) of T<sub>0</sub>AM affects metabolism, cardiovascular function, or thermoregulation in male C57BL/6J mice. Since selenium (Se) is important for proper TH function and Se metabolism is affected by TH, we additionally analyzed Se concentrations in liver, serum, and kidney using total reflection X-ray analysis. <b><i>Results:</i></b> A single injection of T<sub>0</sub>AM had no effect on heart rate, temperature, or activity as assessed by radio telemetry. Likewise, daily administration of T<sub>0</sub>AM did not alter body weight, food or water intake, heart rate, blood pressure, brown adipose tissue thermogenesis, or body temperature, and no significant differences in hepatic glycogen content or mRNA expression of genes involved in cardiovascular function or metabolic control were determined. Also, the X-ray analysis of Se concentrations revealed no significant changes. However, hepatic T<sub>0</sub>AM was significantly increased in the treated animals. <b><i>Conclusions:</i></b> In summary, our data demonstrate that T<sub>0</sub>AM elicits no obvious metabolic, cardiovascular, or thermoregulatory activities in mice. As T<sub>0</sub>AM does also not interfere with TH or Se metabolism, we conclude that the deiodination of 3-T<sub>1</sub>AM to T<sub>0</sub>AM constitutes an efficient inactivation mechanism, terminating the actions of the more powerful precursor.
DOI: 10.6084/m9.figshare.5722711.v5
title: A public data set of overground and treadmill walking kinematics and kinetics of healthy individuals

description: The data
set comprises raw and processed (both in c3d and txt formats) pelvis and lower
extremity kinematics and kinetics signals of 42 healthy volunteers (24 young
adults and 18 older adults) walking in both overground and treadmill in a range
of gait speeds. A file of metadata (xls), including anthropometrics and
information related to each file in the data set is also provided. In addition,
a model file (mdh) and a pipeline file (v3s) for the Visual 3D software program
are also provided.

The data
were collected using a three-dimensional (3D) motion-capture system, force
platforms and an instrumented treadmill while the subjects walked barefoot over
a range of gait speeds.
DOI: 10.17632/wg88j5t3jd
title: Olive_Yield_Spectral_data_from Landsat

description: Dataset generated from Landat-8 OLI and Landsat-9 OLI-2 with 13 features to predict Olive Yield in Tunisia.
DOI: 10.6084/m9.figshare.20627823.v2
title: Effect of visual imagery in Covid-19 social media posts on users’ perception

description: collected data for the effect of visual imagery in Covid-19 social media posts on users’ perception- PS1, PS2 and PS3
DOI: 10.6084/m9.figshare.28982285.v1
title: Chapman_2025 Supplementary Figures and Tables .pdf

description: <i>Xenopus laevis</i> tadpoles regenerate their tails following partial amputation, however, for a brief developmental window, some undertake wound healing rather than regeneration. Inspired by links between microbiomes and human inflammatory disease, we asked how tadpole skin microbiomes and innate immunity influence the ability to regenerate tails. Having previously shown that lipopolysaccharide-Tlr4 signalling promotes regeneration, here, we demonstrate that the peptidoglycan-Tlr2 pathway is also involved. While tadpoles acquire their commensal skin bacteria from their mothers, analysis of mitochondrial haplotypes did not explain familial regenerative bias. Levels of endogenous lipopolysaccharides on tail tips were also not predictive of regenerative success, and shotgun sequencing indicated no difference in bacterial loads. To see if microbiome composition correlated with regenerative success, we sequenced 16S rRNA amplicons from 503 tadpole tail tips and mapped these to regenerative outcomes. While no one taxon appeared critical for regenerative success, higher proportions of Gram-positives correlated with successful regeneration. Our results suggest a previously undocumented role for Tlr2, peptidoglycan and Gram-positive commensal skin bacteria in tipping the balance from wound repair to regenerative programmes in <i>Xenopus laevis</i> refractory stage tadpoles.
DOI: 10.6084/m9.figshare.6815288.v1
title: Database mammal abundance declines

description: 3281 mammal abundance ratios in hunted and unhunted areas with socio-economic predictors of hunting pressure and species traits. See the metada file for details on the variables included
DOI: 10.17632/4vsf5hgy6x
title: ENDOCOVID observational study

description: Data sharing of the ENDOCOVID observational study published under the name of "Oxidative stress-induced endothelial dysfunction and decreased vascular nitric oxide in COVID-19 patients" in EBioMedicine
DOI: 10.17866/rd.salford.10291556.v2
title: Item 5: Phase One Photo Documentation

description: A sets of photos documenting the set of interactions at play in <i>Ballad of Isosceles</i>. Shot by Jason Kenny of Mercurial Creative; featuring Séan Fitton and James Mackie.
DOI: 10.6084/m9.figshare.12958169.v5
title: Body mass Red-necked Nightjars.txt

description: This dataset includes measurements from a long term study (2011-2019, N = 882 measurements) taken in a population of Red-necked nightjars (<i>Caprimulgus ruficollis</i>) in Doñana National Park, located in the southwest of the Iberian Peninsula. The weight and the stomach volume were measured from the captured individuals. Further details on the field procedures are provided in the article.<br>
DOI: 10.6084/m9.figshare.1425067.v1
title: Rhabdovirus L gene sequences

description: Rhabdovirus L gene amino acid sequences (unaligned) used in phylogenetic analysis. Taxon information can be found in http://dx.doi.org/10.6084/m9.figshare.1425419.
DOI: 10.6084/m9.figshare.21113962.v1
title: Communications-Earth-Envt-2022

description: Dataset of Figures 3 and 4 in our paper titled Aqueous alteration of the Vastitas Borealis Formation at the Tianewn-1 landing site
DOI: 10.6084/m9.figshare.24942498.v1
title: Supplementary material.docx

description: Supplementary Material: Variants in <i>BRCA1/2 </i>in a hospital-based cohort in Chile and national literature review.Fernanda J. Martin<sup>1</sup>, Isabel M. Saffie<sup>2</sup>, Mabel A. Hurtado<sup>1,2</sup>, Diana S. Ávila<sup>3</sup>, Rodrigo A. Lagos<sup>4</sup>, Carolina A. Selman<sup>5</sup>, Jonathan Z. Huserman<sup>6</sup>, Valentina A. Castillo<sup>7,8, </sup>, Badir J. Chahuán<sup>1,2</sup>.
DOI: 10.6084/m9.figshare.25522873.v1
title: Behavior and Energy of the M2 Internal Tide in the Madagascar–Mascarene Region

description: A multiple satellites survey about M2 internal tide in the Madagascar–Mascarene Region.
DOI: 10.6084/m9.figshare.28014884.v1
title: <b>genotyping of the Collection of Far Eastern </b><b><i>Actinidia</i></b><b> spp</b>

description: <b>Genetic Diversity of the Collection of Far Eastern </b><b><i>Actinidia</i></b><b> spp. Revealed by RAD Sequencing Technology</b>
DOI: 10.6084/m9.figshare.8918810.v1
title: #DH2018 and #DH2019 Twitter Archive Counts. Summary Comparative Data Table

description: Summary comparative table in a csv file comparing Twitter metrics for #DH2018 and #DH2019 Twitter archives.<br>The metrics compared here are the result of a double method of collection as a means to ensure the validity of the collected data. I used a Python script to collect both archives, and then set the parameters as those for archives I collected using TAGS (see Priego 2018).<br> Even if the collected data still needs to be refined, when the counts are the same or very semilar I get a degree of certainty the data collected via TAGS from the Twitter Search API is close to being as reliable as it could be.<br> For 2018 and 2019 I managed to get the settings and timings right to achieve what looks like a complete set of #DH2018 and #DH2019 tweets. <br><br>In this output I share a comparative table in a CSV file where a summary of the main metrics from both archives can be compared. <br><br>As indicated in the table, it must be noted that there are important differences in mainly a) the number of days before and after the conference days included in the archive and b) the number of days each conference was held on according to their respective web pages / programmes.
DOI: 10.17632/c5mfhr2xcz
title: Offline Handwritten Signature Database based on Age Annotation (OHSDA)

description: Handwritten signature analysis is the endeavoring research in many verification and recognition system problem. As per our best of knowledge there is less number of publicly available datasets which have age class annotation for signature. With this motivation, own dataset is created. The nature of this own offline handwritten signature database is described below. 

• In-house total of 6010 signatures were collected randomly in 601 healthy volunteers (330 males; 271 females; Age range 18-50 years) 

• From each individual 10 signatures acquired on a white A4 paper sheet using blue or black colored ball pen. 

• To avoid geometrical variations, the papers with sample signatures have been scanned using the EPSON DS 1630 color scanner with a resolution of 300 DPI.

• The signature samples consist of multilingual scripts of Kannada, Hindi, Marathi, and English.

• The participants who had knowledge of English and other regional languages, have been educated about the purpose of collection of signature samples.

Male signatures age range will start from ‘male signatures 18-50 years’ and female signature will starts from ‘female signatures 18-50 years’.

All Scanned Offline Signature samples are in .jpg format, the male signatures start with 'm' and female signatures start with 'f'.
DOI: 10.17632/jbdsy2x7n5
title: Data repository for "Increase in insurance losses caused by North Atlantic hurricanes in a warmer climate"

description: This data is associated with the article "Increase in insurance losses caused by North Atlantic hurricanes in a warmer climate". The dataset contains the script used to reproduce the results presented in the paper. 

- "HurricanePaper2024_repo.R" contains the R script that can be used to generate the results presented in the paper.
DOI: 10.17632/rpr7yykzx8
title: Hot deformation data for Haynes 214, Haynes 230 and Inconel 740H

description: Gleeble iso-T true stress-strain data at 1000C-1200C in 50C steps for 0.01/s - 1/s; EBSD IPF and BC of geometric centers of sectioned samples; ThermoCalc 2015 calculated property diagrams for stable phases and data tables with compositional changes vs. T for all phases
DOI: 10.6084/m9.figshare.17050343.v1
title: ChromHMM_Expanded_Segments_Results

description: ChromHMM expanded segments in HCR/LCR rats. <br>
DOI: 10.6084/m9.figshare.22574533.v1
title: COVID Pandemic childcare-policy response dataset (COVID-PCPR)

description: <strong>COVID-PCPR</strong> is an original dataset, capturing rules on modes of pandemic early childhood education and care services (ECEC) and school closures and reopenings in 28 European countries in the first COVID-19 pandemic year (March 2020 to April 2021). For full details see <strong>codebook</strong>.