cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4121/19874485
title: Data underlying the publication: "PanTools v3: functional annotation, classification, and phylogenomics "

description: SnakeMake pipeline to reperform the pangenome construction and analyses on seven different datasets from the publication: "PanTools v3: functional annotation, classification, and phylogenomics". Pangenome analysis of <em>Drosophila</em>, <em>Arabidopsis thaliana</em>, <em>Saccharomyces cerevisiae, Pectobacterium </em>and SARS-CoV-2. Demonstration of PanTools' scalability on <em>Homo sapiens</em> and <em>Solanum lycopersicum</em>. <br>
DOI: 10.4121/19940174.v1
title: Data & analysis underlying the publication: Hard superconducting gap in a high-mobility semiconductor.

description: The raw data are organized in folders based on the kind of device presented in the paper. The Juppyter notebooks contain the code for analyzing and plotting the data, there is one notebook for each figure of the papaer and supplementary. The scripts used to import the datasets of different kinds are contained in util_scripts, along with some other useful functions for plotting and formatting. <br>
DOI: 10.4121/19940174
title: Data & analysis underlying the publication: Hard superconducting gap in a high-mobility semiconductor.

description: The raw data are organized in folders based on the kind of device presented in the paper. The Juppyter notebooks contain the code for analyzing and plotting the data, there is one notebook for each figure of the papaer and supplementary. The scripts used to import the datasets of different kinds are contained in util_scripts, along with some other useful functions for plotting and formatting. <br>
DOI: 10.4121/20143343.v1
title: Data underlying the MSc thesis: Hydraulic performance of CoastaLock armour units

description: Dataset belonging to the MSc thesis "Hydraulic performance of CoastaLock armour units" by Auke Molenkamp at the Delft University of Technology on June 30th, 2022. <br> The data collected contains photographic and videographic material of the physical model tests, as well as all files used for wave generation, produced by the wave gauges, used for data processing and analysis. <br> The dataset also contains the dataset used for the BSc thesis by Sofyan al Hanati
DOI: 10.4121/20143343
title: Data underlying the MSc thesis: Hydraulic performance of CoastaLock armour units

description: Dataset belonging to the MSc thesis "Hydraulic performance of CoastaLock armour units" by Auke Molenkamp at the Delft University of Technology on June 30th, 2022. <br> The data collected contains photographic and videographic material of the physical model tests, as well as all files used for wave generation, produced by the wave gauges, used for data processing and analysis. <br> The dataset also contains the dataset used for the BSc thesis by Sofyan al Hanati
DOI: 10.4121/20208710
title: REMARO summer school 2022 data

description: Sonar and MAVROS data recored in ros2 bag format using ROS. <br> Recordings were performed using a BlueROV2 robot equipped with Ping360 sonar. ROS setup: - ROS2 Foxy - Ping360 sonar ROS2 package: https://github.com/CentraleNantesRobotics/ping360_sonar/tree/3ade26c7a6f22cc4f50488ae578282b36e150a04 - MAVROS: https://github.com/mavlink/mavros/commit/227b3accf7d16c7f0c468da25125e164de3ff292 <br> Data was recorded at TU Delft 3me pond 01-07-2022. Data was colleted during the REMARO summer school 2022. This data will be used in the activities of REMARO (https://remaro.eu/) project.
DOI: 10.4121/19500344.v1
title: Data accompanying the paper entitled "Rapid normal stress oscillations cause dilatation and weakening in gouge-bearing faults"

description: In some scenarios, faults in the crust are withstanding rapid stress changes of different magnitudes, such as those from nearby or remote earthquakes, seasonal impoundment and discharge of reservoirs, and hydrocarbon and geothermal energy production. The impact of such stress changes on the earthquake potential of a fault is poorly understood. Researchers from the Utrecht University and the Delft University of Technology have explored this effect<sub> </sub>by conducting laboratory experiments on simulated faults under <i>in-situ</i> fault conditions. They employed the high-temperature-pressure ring-shear friction apparatus installed in the HPT lab of the Utrecht University. During the experiments, different modes of perturbations were applied to the simulated fault, including normal stress steps (NSS), pulses (NSP), and oscillations (NSO), while shearing the fault at velocity of 1 μm/s. They measured different quantities with high sampling rates such as shear stress and the axial displacement. The enclosed datasets consist of the raw data from five individual experiments (u572, u573, u574, u828, and u829). In two experiments (u572 and u573), a few segments of particular interests are extracted for detailed analyses.
DOI: 10.4121/19500344
title: Data accompanying the paper entitled "Rapid normal stress oscillations cause dilatation and weakening in gouge-bearing faults"

description: In some scenarios, faults in the crust are withstanding rapid stress changes of different magnitudes, such as those from nearby or remote earthquakes, seasonal impoundment and discharge of reservoirs, and hydrocarbon and geothermal energy production. The impact of such stress changes on the earthquake potential of a fault is poorly understood. Researchers from the Utrecht University and the Delft University of Technology have explored this effect<sub> </sub>by conducting laboratory experiments on simulated faults under <i>in-situ</i> fault conditions. They employed the high-temperature-pressure ring-shear friction apparatus installed in the HPT lab of the Utrecht University. During the experiments, different modes of perturbations were applied to the simulated fault, including normal stress steps (NSS), pulses (NSP), and oscillations (NSO), while shearing the fault at velocity of 1 μm/s. They measured different quantities with high sampling rates such as shear stress and the axial displacement. The enclosed datasets consist of the raw data from five individual experiments (u572, u573, u574, u828, and u829). In two experiments (u572 and u573), a few segments of particular interests are extracted for detailed analyses.
DOI: 10.4121/20152226
title: Data underlying the research project: Genotype-specific reference interval of haptoglobin tests on the BN II System

description: This study was designed to investigate the reference intervals of serum HP on the BN II System for different genotype individuals. The data submitted are the basic conditions and clinical laboratory test data of 1229 healthy people, including Gender, Age, white blood cell (WBC), hemoglobin (HGB), alanine transaminase (ALT), glucose (GLU), cholesterol (CHO), Triglyceride (TG), low-density lipoprotein (LDL), haptoglobin concentration and genotype. Before blood collection, individuals were instructed to maintain a normal diet within 3 days and fast overnight (&gt;8 hours). The exclusion criteria were set as follows: WBC&gt;9.5 G/L, HGB&lt;90 g/L, ALT&gt;50 U/L, CHO≥5.69 mmol/L, TG≥2.26 mmol/L, LDL≥4.14 mmol/L, GLU&gt;6.1 mmol/L. Serum HP concentrations were measured by BN II System (Siemens AG, Munich, Germany). WBC, HB levels were determined by XN-2000 (Sysmex, Kobe, Japan). ALT, CHO, TG, LDL, GLU measurements were determined by AU 5800 (Beckman Coulter, Brea, USA). HP genotyping was determined by gel electrophoresis method and real-time PCR method.
DOI: 10.4121/20047328
title: Data and code underlying the master thesis: Goal-setting dialogue for physical activity with a virtual coach

description: This dataset contains data and analysis from the experiment conducted for the thesis <em>Goal-setting dialogue for physical activity with a virtual coach. </em> <br> We studied goal-setting with a virtual coach (conversational agent). The purpose of this study was to find out whether presenting examples of people who achieved a running or walking goal enhances running or walking self-efficacy of the user. We evaluated two example types: general examples (the overall most motivating examples) or examples that were personalized. Personalized examples were examples that people similar to the user considered motivating. An experiment was conducted to evaluate whether there was an increase in users' self-efficacy after the conversation with the virtual coach, how motivating the given examples were, and users' attitudes towards the virtual coach.
DOI: 10.4121/19355288.v1
title: UTBurner CFX droplet dataset

description: Simulation dataset corresponding to droplet evolution within the UTBurner. Corresponding to MAGISTER project ESR 7<br>
DOI: 10.4121/19355288.v2
title: Magister UT Burner CFX droplet dataset

description: Simulation dataset corresponding to droplet evolution within Magister UT Burner. Corresponding to MAGISTER project ESR 7 <br>
DOI: 10.4121/19355288
title: Magister UT Burner CFX droplet dataset

description: Simulation dataset corresponding to droplet evolution within Magister UT Burner. Corresponding to MAGISTER project ESR 7 <br>
DOI: 10.4121/20141567
title: A dataset of 10-year regional-scale soil moisture and soil temperature measurements at multiple depths on the Tibetan Plateau

description: Tibet-Obs is the first long-term soil moisture and soil temperature (SMST) observatory in the Tibetan Plateau (TP) covering different representative climatic and land surface conditions, which includes the Maqu, Naqu, and Ngari (including Ali and Shiquanhe) networks (Fig. 1). The released long-term (~10 years)SMST profile dataset includes original in-situ measurements at a 15-min interval collected between 2008 and 2019 for all the three networks and a spatially upscaled data for the Maqu and Shiquanhe networks.
DOI: 10.4121/20160329.v1
title: Data repository for manuscript "The Influence of Feedwater pH on Membrane Charge Ionization and Ion Rejection by Reverse Osmosis: An Experimental and Theoretical Study"

description: The dataset describes both the theoretical and experimental data for desalination of 30 mM NaCl salt solution with BW30HR-440 reverse osmosis (RO) membrane at varying pH. Feedwater pH is varied by acid-base dosing (HCl and NaOH), and gas contol (CO2) techniques. Experimental runs 1-4 are for acid-base dosing whereas runs 5 and 6 are for gas control. The model prediction data is obtained from a one dimensional mass transport model using the extended Donnan-Steric partitioning pore model and coupled with membrane charge ionization description as well as transport of H+ and OH-.
DOI: 10.4121/20160329
title: Data repository for manuscript "The Influence of Feedwater pH on Membrane Charge Ionization and Ion Rejection by Reverse Osmosis: An Experimental and Theoretical Study"

description: The dataset describes both the theoretical and experimental data for desalination of 30 mM NaCl salt solution with BW30HR-440 reverse osmosis (RO) membrane at varying pH. Feedwater pH is varied by acid-base dosing (HCl and NaOH), and gas contol (CO2) techniques. Experimental runs 1-4 are for acid-base dosing whereas runs 5 and 6 are for gas control. The model prediction data is obtained from a one dimensional mass transport model using the extended Donnan-Steric partitioning pore model and coupled with membrane charge ionization description as well as transport of H+ and OH-.
DOI: 10.4121/20151527.v1
title: Data underlying the research of: Influence of the manner of water discharge from dam reservoirs on downstream water quality

description: The data presented are the results of the research focuses on the key challenges for sustainable use of water resources in the world. For this purpose, the following were analyzed, the most relevant issues (from an economic and ecological point of view) for proper environmental management are analyzed, such as: - transport and fate of pollutants in the aquatic environment, - identification of effective actions to prevent the negative effects of commonly occurring pollutants in aquatic ecosystems.
DOI: 10.4121/20151527
title: Data underlying the research of: Influence of the manner of water discharge from dam reservoirs on downstream water quality

description: The data presented are the results of the research focuses on the key challenges for sustainable use of water resources in the world. For this purpose, the following were analyzed, the most relevant issues (from an economic and ecological point of view) for proper environmental management are analyzed, such as: - transport and fate of pollutants in the aquatic environment, - identification of effective actions to prevent the negative effects of commonly occurring pollutants in aquatic ecosystems.
DOI: 10.4121/20153585
title: Supplementary data for the paper 'Acceptance of conditionally automated cars: Just one factor?'

description: Recent research suggests the existence of a general acceptance factor (GAF), similar to the “big one” in personality research or the general intelligence factor (<em>g</em>). The current study, written in the form of a short commentary, sought empirical support for the GAF by using data from a large multinational questionnaire of the L3Pilot project on the acceptance of conditionally automated cars (CACs). Our analysis provides clear support for a GAF of CACs, as this factor explained 55% of the variance among the questionnaire items. Criterion validity was established by demonstrating an inverted U-curve between GAF scores and respondents’ ages in 17 countries. It is recommended that researchers concerned with technology acceptance consider whether their acceptance constructs are sufficiently unique or merely part of a positive manifold.
DOI: 10.4121/20153585.v1
title: Supplementary data for the paper 'Acceptance of conditionally automated cars: Just one factor?'

description: Recent research suggests the existence of a general acceptance factor (GAF), similar to the “big one” in personality research or the general intelligence factor (<em>g</em>). The current study, written in the form of a short commentary, sought empirical support for the GAF by using data from a large multinational questionnaire of the L3Pilot project on the acceptance of conditionally automated cars (CACs). Our analysis provides clear support for a GAF of CACs, as this factor explained 55% of the variance among the questionnaire items. Criterion validity was established by demonstrating an inverted U-curve between GAF scores and respondents’ ages in 17 countries. It is recommended that researchers concerned with technology acceptance consider whether their acceptance constructs are sufficiently unique or merely part of a positive manifold.
DOI: 10.4121/20134163.v1
title: Data supplementary to the book chapter "COVID-19 and Changing Values"

description: This dataset and notebook correspond to the chapter "COVID-19 and Changing Values" in the book "Values for a Post-Pandemic Future" (Springer). In the article, we study value change due to the corona pandemic. With the help of topic modelling, we analysed COVID-related news articles for changes in the frequency of how often these news articles address eleven different values. We have collected the data from a number of newspaper datasets (incl. Reuters). The dataset and notebook uploaded here can be used to re-do the analysis.
DOI: 10.4121/20134163
title: Data supplementary to the book chapter "COVID-19 and Changing Values"

description: This dataset and notebook correspond to the chapter "COVID-19 and Changing Values" in the book "Values for a Post-Pandemic Future" (Springer). In the article, we study value change due to the corona pandemic. With the help of topic modelling, we analysed COVID-related news articles for changes in the frequency of how often these news articles address eleven different values. We have collected the data from a number of newspaper datasets (incl. Reuters). The dataset and notebook uploaded here can be used to re-do the analysis.
DOI: 10.4121/20131736.v1
title: Data underlying the publication: A realistic arteriovenous dialysis graft model for hemodynamic simulations

description: This repository contains processed CFD data required to recreate figures 2 and 3 of the publication: A realistic arteriovenous dialysis graft model for hemodynamic simulations. All data is stored in XDMF/H5 format and can be visualized using scientific visualization software such as paraview (<sub>https://www.paraview.org/</sub>). The 3D geometries used for this study can be extracted from the result files. <br> The data is structured as follows: <br> * Simulation: Simulation results root folder * Realistic: contains all CFD results of the realistic geometry * flow_metrics: contains all time-averaged derived cfd metrics <br> 3D representations of the wall shear derived metrics are stored in the files below. For the paper only "OSI", "WSS_MAX" and "TAWSS" are used. Other included metrics include the minimal WSS ("WSS_MIN") and the relative residence time ("RRT") * pt01iBlock_wss_metrics.xdmf/h5: (corresponding to the ZF-DB boundary condition in the manuscript) * pt01iZCRCZ_wss_metrics.xdmf/h5: (corresponding to the AVCE-DB boundary condition in the manuscript) * pt01iZCRCZR_wss_metrics.xdmf/h5: (corresponding to the AVCE-DB boundary condition in the manuscript) <br> 3D representations of turbulence metrics are stored in the files below. Root-mean-square magnitude of high frequency velocity perturbations are quantified using the data field "TSI" * turbulenceBlock.xdmf/h5 (corresponding to the ZF-DB boundary condition in the manuscript) * turbulenceZCRCZ.xdmf/h5 (corresponding to the AVCE-DB boundary condition in the manuscript) * turbulenceZCRCZR.xdmf/h5 (corresponding to the AVCE-DB boundary condition in the manuscript) <br> * Idealized: contains all CFD results of the idealized geometry. Same folder structure as Realistic <br> <br> <br>
DOI: 10.4121/20131736
title: Data underlying the publication: A realistic arteriovenous dialysis graft model for hemodynamic simulations

description: This repository contains processed CFD data required to recreate figures 2 and 3 of the publication: A realistic arteriovenous dialysis graft model for hemodynamic simulations. All data is stored in XDMF/H5 format and can be visualized using scientific visualization software such as paraview (<sub>https://www.paraview.org/</sub>). The 3D geometries used for this study can be extracted from the result files. <br> The data is structured as follows: <br> * Simulation: Simulation results root folder * Realistic: contains all CFD results of the realistic geometry * flow_metrics: contains all time-averaged derived cfd metrics <br> 3D representations of the wall shear derived metrics are stored in the files below. For the paper only "OSI", "WSS_MAX" and "TAWSS" are used. Other included metrics include the minimal WSS ("WSS_MIN") and the relative residence time ("RRT") * pt01iBlock_wss_metrics.xdmf/h5: (corresponding to the ZF-DB boundary condition in the manuscript) * pt01iZCRCZ_wss_metrics.xdmf/h5: (corresponding to the AVCE-DB boundary condition in the manuscript) * pt01iZCRCZR_wss_metrics.xdmf/h5: (corresponding to the AVCE-DB boundary condition in the manuscript) <br> 3D representations of turbulence metrics are stored in the files below. Root-mean-square magnitude of high frequency velocity perturbations are quantified using the data field "TSI" * turbulenceBlock.xdmf/h5 (corresponding to the ZF-DB boundary condition in the manuscript) * turbulenceZCRCZ.xdmf/h5 (corresponding to the AVCE-DB boundary condition in the manuscript) * turbulenceZCRCZR.xdmf/h5 (corresponding to the AVCE-DB boundary condition in the manuscript) <br> * Idealized: contains all CFD results of the idealized geometry. Same folder structure as Realistic <br> <br> <br>
DOI: 10.4121/20080097
title: LocScale test data

description: Test data for the unit tests of the cryo-EM map sharpening software LocScale.
DOI: 10.4121/20101901
title: SeismicDataNeNet

description: In this DATASET we replicate seismological broadband data from <em>IRIS Web Services</em> (<sub>https://service.iris.edu/</sub>) <em>including the IU network. </em> This is the data used for training and testing of the neural network for the paper "Temporal earthquake forecasting". <br> We provide both originally downloaded data and the version that has been processed (normlaised, standardised) and classified before being used as input for the network. <br> Original input files are mseed (miniseed)are named TESTxx.mseed (xx is number): <br> -All files contain information on time interval, the recording station and data parameters in the mseed hearder. -Events used for training are TESTxx.mseed where xx=(7, 8, 3, 4, 5, 6, 9, 10, 11, 16, 17, 20, 21, 22, 24, 25, 27, 28, 31, 33, 34, 35, 37, 38) -Events used for testing are TESTyy.msedd where yy=(12, 13, 14, 15, 29, 30, 39) <br> The standardized, normalized and classified data are in files normpre.p and normnoise.p, containing widows classified as precursor and noise, respectively, for the network training. These files are in format pickle, and are used as input for the network -File normnoise.p contains the formatted data from all windows classified as noise in all events (first 1000 s of 10 hours file). -File normpre.p contains the formatted data from all windows classified as precursor in all events (last 1000 s of 10 hours file).
DOI: 10.4121/20005565.v1
title: Supplementary data for the paper ‘Stopping by looking: A driver-pedestrian interaction study in a coupled simulator using head-mounted displays with eye-tracking'

description: Automated vehicles (AVs) can perform low-level control tasks but are not always capable of proper decision-making. This paper presents a concept of eye-based maneuver control for AV-pedestrian interaction. Previously, it was unknown whether the AV should conduct a stopping maneuver when the driver looks at the pedestrian or looks away from the pedestrian. A two-agent experiment was conducted using two head-mounted displays with integrated eye-tracking. Seventeen pairs of participants (pedestrian and driver) each interacted in a road crossing scenario. The pedestrians’ task was to hold a button when they felt safe to cross the road, and the drivers’ task was to direct their gaze according to instructions. Participants completed three 16-trial blocks: (1) Baseline, in which the AV was pre-programmed to yield or not yield, (2) Look to Yield (LTY) in which the AV yielded when the driver looked at the pedestrian, and (3) Look Away to Yield (LATY) in which the AV yielded when the driver did not look at the pedestrian. The driver’s eye movements in the LTY and LATY conditions were visualized using a virtual light beam. A performance score was computed based on whether the pedestrian held the button when the AV yielded and released the button when the AV did not yield. Furthermore, the pedestrians’ and drivers’ acceptance of the mappings was measured through a questionnaire. The results showed that the LTY and LATY mappings yielded better crossing performance than Baseline. Furthermore, the LTY condition was best accepted by drivers and pedestrians. Eye-tracking analyses indicated that the LTY and LATY mappings attracted the pedestrian’s attention, but pedestrians adequately distributed their attention between the AV and a second vehicle approaching from the other direction. In conclusion, LTY control may be a promising means of AV control at intersections before full automation is technologically feasible.