cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13821364
title: Exploration of Novel Low-Abundance Proteins in the Venom Gland Transcriptomes of Bothrops asper and Bothrops jararaca
title: Supplementary Materials

description: Supplementary Material 1: File S1_AG5: sequence, model, and Pfam annotation of Allergen 5 in Bothrops asper and Bothrops jararaca; File S2_Apolipophorin: sequence, model, and Pfam annotation of Apolipophorin and von Willebrand Factor, in Bothrops asper and Bothrops jararaca; File S3_ARSB: sequence, model, and Pfam annotation of Arylsulfatase in Bothrops asper and Bothrops jararaca; File S4_Botrocetin: sequence, model, and Pfam annotation of Botrocetin in Bothrops asper and Bothrops jararaca; File S5_DHODH: sequence, model, and Pfam annotation of Dihydroorotate dehydrogenase in Bothrops asper and Bothrops jararaca; File S6_basparin: sequence, model, and Pfam annotation of Basparin and Bothropasin in Bothrops asper.

Supplementary Material 2: Model Validation. File S7_Ag5: ERRAT, RAMACHANDRAN, and Verify3D of Allergen 5 in Bothrops asper and Bothrops jararaca; File S8_Apolipophorin: ERRAT, RAMACHANDRAN, and Verify3D of Apolipophorin and von Willebrand Factor in Bothrops asper and Bothrops jararaca; File S9_ARSB: ERRAT, RAMACHANDRAN, and Verify3D of Arylsulfatase in Bothrops asper and Bothrops jararaca; File S10_Botrocetin: ERRAT, RAMACHANDRAN, and Verify3D of Botrocetin in Bothrops asper and Bothrops jararaca; File S11_DHODH: ERRAT, RAMACHANDRAN, and Verify3D of Dihydroorotate dehydrogenase in Bothrops asper and Bothrops jararaca; File S12_Basparin: ERRAT, RAMACHANDRAN, and Verify3D of Basparin and Bothropasin in Bothrops asper.
DOI: 10.5281/zenodo.13821365
title: New proteins identified in the transcriptome of the venom gland of Bothrops asper and Bothrops jararaca

description: Previous proteomic studies of viperid venom reveal that it is mainly composed of metalloproteinases (SVMPs), serine proteinases (SVSPs), phospholipase A2 (PLA2) and C-type lectins (CTLs). However, other proteins appears in minor amounts that affect prey and need to be identified. This study aims to identify novel toxic proteins in the venom gland transcriptome of Bothrops asper and Bothrops jararaca, using data from NCBI. Bioinformatics tools were used to assemble, identify, and compare potentially novel proteins in both species, and performed functional annotation with BLASTX against the NR database. While previous assemblies have been performed for B. jararaca, this is the first assembly of the B. asper venom gland transcriptome. Proteins with potentially novel functions were identified, including arylsulfatase and dihydroorotate dehydrogenase, among others, that could have implications for venom toxicity. These results suggest that the identified proteins may contribute to venom toxic variation and provide new opportunities for antivenom research. The study improves understanding of the protein composition of Bothrops venom and suggests new possibilities for the development of treatments and antivenoms.
DOI: 10.5281/zenodo.15383710
title: notholebias_vermiculatus_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.15383711
title: notholebias_vermiculatus_decontaminated_FSCR.fasta.gz
DOI: 10.21233/vwfw-bz22
title: Anderson Lake diatom dataset

description: Raw data for the Anderson Lake diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15237731
title: Exploration of Novel Low-Abundance Proteins in the Venom Gland Transcriptomes of Bothrops asper and Bothrops jararaca
title: Supplementary Materials

description: Supplementary Material 1: File S1_AG5: sequence, model, and Pfam annotation of Allergen 5 in Bothrops asper and Bothrops jararaca; File S2_Apolipophorin: sequence, model, and Pfam annotation of Apolipophorin and von Willebrand Factor, in Bothrops asper and Bothrops jararaca; File S3_ARSB: sequence, model, and Pfam annotation of Arylsulfatase in Bothrops asper and Bothrops jararaca; File S4_Botrocetin: sequence, model, and Pfam annotation of Botrocetin in Bothrops asper and Bothrops jararaca; File S5_DHODH: sequence, model, and Pfam annotation of Dihydroorotate dehydrogenase in Bothrops asper and Bothrops jararaca; File S6_basparin: sequence, model, and Pfam annotation of Basparin and Bothropasin in Bothrops asper. 

Supplementary Material 2: Model Validation. File S7_Ag5: ERRAT, RAMACHANDRAN, and Verify3D of Allergen 5 in Bothrops asper and Bothrops jararaca; File S8_Apolipophorin: ERRAT, RAMACHANDRAN, and Verify3D of Apolipophorin and von Willebrand Factor in Bothrops asper and Bothrops jararaca; File S9_ARSB: ERRAT, RAMACHANDRAN, and Verify3D of Arylsulfatase in Bothrops asper and Bothrops jararaca; File S10_Botrocetin: ERRAT, RAMACHANDRAN, and Verify3D of Botrocetin in Bothrops asper and Bothrops jararaca; File S11_DHODH: ERRAT, RAMACHANDRAN, and Verify3D of Dihydroorotate dehydrogenase in Bothrops asper and Bothrops jararaca; File S12_Basparin: ERRAT, RAMACHANDRAN, and Verify3D of Basparin and Bothropasin in Bothrops asper.
DOI: 10.21233/1g5b-3g05
title: Lake Alaotra pollen dataset

description: Raw data for the Lake Alaotra pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/1za4-pw55
title: LDDsite6201 ostracode surface sample dataset

description: Raw data for the LDDsite6201 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/r90a-fg76
title: Antler River ostracode surface sample dataset

description: Raw data for the Antler River ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/tmtp-4745
title: Minden Bog testate amoebae surface sample dataset

description: Raw data for the Minden Bog testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.gt6zrf
title: Occurrence Download

description: A dataset containing 3383 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "OccurrenceStatus is Present",
 "TaxonKey is Microtus agrestis (Linnaeus, 1761)",
 "Year 1970-2025"
 ]
}

 The dataset includes 3383 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025266-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/tn1f-hk79
title: Fourth Debsconeag Lake water chemistry dataset

description: Raw data for the Fourth Debsconeag Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/07vq-a624
title: Wilson River ostracode surface sample dataset

description: Raw data for the Wilson River ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/41n4-1f61
title: LDDsite2565 water chemistry dataset

description: Raw data for the LDDsite2565 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/w75z-xf28
title: Old Crow Flats (Core VIIIB) pollen dataset

description: Raw data for the Old Crow Flats (Core VIIIB) pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/yc45-3b20
title: Forez site 13 pollen surface sample dataset

description: Raw data for the Forez site 13 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/4y2j-cd45
title: Mirror Lake diatom bottom sample dataset

description: Raw data for the Mirror Lake diatom bottom sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/jvbm-yk54
title: Mississippi River ostracode surface sample dataset

description: Raw data for the Mississippi River ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/2mpe-7h81
title: Haliburton Lake water chemistry dataset

description: Raw data for the Haliburton Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/hev0-5w66
title: Kettle diatom bottom sample dataset

description: Raw data for the Kettle diatom bottom sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/d7ve-qy46
title: Lake Erie water chemistry dataset

description: Raw data for the Lake Erie water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/sn3k-fj19
title: Angelo pollen surface sample dataset

description: Raw data for the Angelo pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ytby-8g63
title: Tanghongling testate amoebae surface sample dataset

description: Raw data for the Tanghongling testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.p69yrc
title: Occurrence Download

description: A dataset containing 2576 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-16.96457 32.89311,-17.32951 32.90824,-17.32006 32.59435,-16.52209 32.51114,-16.58638 32.82882,-16.96457 32.89311))",
 "IucnRedListCategory is one of (EN, CR)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2576 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025267-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/mwgx-4152
title: Blackfish Lake diatom dataset

description: Raw data for the Blackfish Lake diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.7deykf
title: Occurrence Download

description: A dataset containing 174897 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Harmonised freshwater fish occurrence and abundance data for 12 federal states in Germany"
 ]
}

 The dataset includes 174897 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025265-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/fa4t-yk59
title: LDDsite1811 water chemistry dataset

description: Raw data for the LDDsite1811 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/s5p8-e743
title: Chequamegon Flowage diatom dataset

description: Raw data for the Chequamegon Flowage diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/f5ye-q734
title: Zeto Point [ADK-00011] [Kuluk Bay North] vertebrate fauna dataset

description: Raw data for the Zeto Point [ADK-00011] [Kuluk Bay North] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.ahpn9z
title: Occurrence Download

description: A dataset containing 689 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cryptantha leiocarpa (Fisch. & C.A.Mey.) Greene"
 ]
}

 The dataset includes 689 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025268-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/6p71-6542
title: Sidney Bog testate amoebae surface sample dataset

description: Raw data for the Sidney Bog testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/at5x-4j62
title: Nishneye & Verkhneye Juglans forest 1 pollen surface sample dataset

description: Raw data for the Nishneye & Verkhneye Juglans forest 1 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/pd8t-5g53
title: LDDsite1706 ostracode surface sample dataset

description: Raw data for the LDDsite1706 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/6h2r-7k72
title: Laguna El Junco diatom surface sample dataset

description: Raw data for the Laguna El Junco diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.a3wmvd
title: Occurrence Download

description: A dataset containing 476 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pongo pygmaeus morio (Owen, 1837)"
 ]
}

 The dataset includes 476 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025269-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/4ydc-n204
title: Rio Timbio pollen dataset

description: Raw data for the Rio Timbio pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/rwdf-xm16
title: North 4 testate amoebae surface sample dataset

description: Raw data for the North 4 testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/hkyj-tv59
title: Crooked Lake (St) water chemistry dataset

description: Raw data for the Crooked Lake (St) water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/17cg-e570
title: Camp 8 Lake water chemistry dataset

description: Raw data for the Camp 8 Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/0m8p-7n42
title: LDDsite1972 ostracode surface sample dataset

description: Raw data for the LDDsite1972 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ktse-bs23
title: 15 [HFL15] water chemistry dataset

description: Raw data for the 15 [HFL15] water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/276n-rt53
title: braided streams of Mackenzie River water chemistry dataset

description: Raw data for the braided streams of Mackenzie River water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/5s40-8484
title: Reddick 1A vertebrate fauna dataset

description: Raw data for the Reddick 1A vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/de09-ps62
title: Dajiuhu testate amoebae surface sample dataset

description: Raw data for the Dajiuhu testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/xa12-8r49
title: Wapato diatom bottom sample dataset

description: Raw data for the Wapato diatom bottom sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/0583-f939
title: Mill Creek Watershed 2 Reservoir water chemistry dataset

description: Raw data for the Mill Creek Watershed 2 Reservoir water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/zm2q-bd61
title: NICHOL28 pollen surface sample dataset

description: Raw data for the NICHOL28 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.