cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4980680.v1
title: Ligustrum lucidum como uma espécie invasora oportunista em uma floresta com araucária no sul do Brasil – Material Suplementar

description: Material suplementar online ao artigo "<i>Ligustrum lucidum</i> como uma espécie invasora oportunista em uma floresta com araucária no sul do Brasil" publicado na revista Rodriguésia, em que se objetivou avaliar o processo de invasão em uma área de Floresta Ombrófila Mista no Sul do Brasil. Os dados suplementares se constituem nos seguintes arquivos: 1- dados_brutos_dinamica.csv Esse arquivo em formato CSV traz uma planilha com os valores alométricos obtidos em campo para cada indivíduo registrado em cada parcela amostral. Cada uma das parcelas foi amostrada no ano de 2012 e posteriormente no ano de 2015 para se obter informações sobre a dinâmica da vegetação [Legenda: T – Número das Transecções de 20 x 100m estabelecidas para o estudo; Parcela – Número das Parcelas amostrais de 20 x 20m existentes em cada transecção; lig - presença (c) ou ausência (s) de<i> Ligustrum lucidum</i> na parcela; N - numeração da árvore no campo; Espécie - identidade botânica da árvore; DAP1 - Diâmetro na altura do peito em cm no ano de 2012; AS1 - Área basal (m2) de cada árvore no ano de 2012; DAP2- Diâmetro na altura do peito em cm no ano de 2015; AS2 - Área basal (m2) de cada árvore no ano de 2015; situação - evento de dinâmica (morta, recruta e sobrevivente); ASdif - diferença entre AS2 e AS1]. 2. Polígono Frag. EPAGRI.kmz Arquivo KMZ com o polígono da área estudada para visualização geográfica da área no software Google Earth. 3. area de estudo.jpg Imagem do Google Earth, com indicação da área de estudo (polígono de cor branca).
DOI: 10.6084/m9.figshare.4980569
title: Examination of the effects of breath hydrogen and methane levels on the EC/IR II

description: Fifty patients undergoing hydrogen and methane breath testing at Cedars-Sinai GI Motility Lab were recruited, and consented to having their breath tested for alcohol using the EC/IR II (Intoximeters, Inc., St. Louis). The subjects gave multiple breath samples for alcohol analysis during this controlled study. All subjects had hydrogen in their breath ranging from 1 to 176 parts per million (ppm). Methane was also present in some patients’ breath samples (0–107 ppm). In all cases, except for one subject that admitted to heavy drinking the night before, breath alcohol results were 0.000 g/210 L. Based on these findings, breath hydrogen and methane do not have any impact on breath alcohol results with the EC/IR II.
DOI: 10.6084/m9.figshare.4980578
title: Computation of elastic constants of solids using molecular simulation: comparison of constant volume and constant pressure ensemble methods

description: We compute the elastic stiffness tensor of fcc argon at 60 K and 1 bar using molecular simulation tools. Three different methods are investigated: explicit deformations of the simulation box, strain fluctuations at constant pressure and stress fluctuations at constant volume. Statistical ensemble sampling is done using molecular dynamics and Monte Carlo simulations. We observe a good agreement between the different methods and sampling algorithms excepted with molecular dynamics simulations in the (NpT) ensemble. There, we notice a strong dependence of the computed elastic constants with the barostat parameter, whereas molecular dynamics simulations in the (NVT) ensemble are not affected by the thermostat parameter.
DOI: 10.6084/m9.figshare.4980569.v1
title: Examination of the effects of breath hydrogen and methane levels on the EC/IR II

description: Fifty patients undergoing hydrogen and methane breath testing at Cedars-Sinai GI Motility Lab were recruited, and consented to having their breath tested for alcohol using the EC/IR II (Intoximeters, Inc., St. Louis). The subjects gave multiple breath samples for alcohol analysis during this controlled study. All subjects had hydrogen in their breath ranging from 1 to 176 parts per million (ppm). Methane was also present in some patients’ breath samples (0–107 ppm). In all cases, except for one subject that admitted to heavy drinking the night before, breath alcohol results were 0.000 g/210 L. Based on these findings, breath hydrogen and methane do not have any impact on breath alcohol results with the EC/IR II.
DOI: 10.6084/m9.figshare.4980539
title: Changes in levator hiatus dimensions during pregnancy and after delivery in nulliparas: a prospective cohort study using 3D transperineal ultrasound

description: <b>Purpose:</b> The purpose of this study was to investigate the changes that occur in the levator ani muscle (1) during pregnancy and (2) after labor depending on the mode of delivery in a cohort of nulliparas. <b>Materials and methods:</b> A prospective cohort longitudinal study, consisting of 84 primiparas who were examined and recruited in an antenatal clinic was conducted. All participants were submitted to a real-time three-dimensional (3D) ultrasonographic evaluation of the levator ani at (1) 12, (2) 22, and (3) 32 weeks of pregnancy (4) and 4–6 months postdelivery. The 3D volumes were acquired and stored for an offline analysis. <b>Results:</b> Data from 59 women with at least two measurements were available for analysis. 35 women were delivered vaginally and 24 via cesarean section. There was a statistical increase in the dimensions of the levator hiatus at each pregnancy trimester when compared to the measurements of the previous trimesters. After vaginal delivery, hiatal dimensions increased compared to the third-trimester measurements; after cesarean section, hiatal dimensions decreased. <b>Conclusions:</b> This study supports that in primiparas, the dimensions of the levator hiatus increase significantly during pregnancy and subsequently either increase further after vaginal delivery or decrease to the first-trimester levels after cesarean section.
DOI: 10.6084/m9.figshare.4980542
title: Agricultural landscapes as habitat for birds in central Chile

description: Supplementary material: Data set
DOI: 10.6084/m9.figshare.4980542.v1
title: Agricultural landscapes as habitat for birds in central Chile

description: Supplementary material: Data set
DOI: 10.6084/m9.figshare.4978928
title: Radiocesium interception potential of agricultural soils in northeast Japan

description: The health risks associated with the long-term intake of radiocesium from food have been of great concern since the Fukushima Daiichi Nuclear Power Station accident in 2011. Therefore, evaluating the phytoavailability and mobility of radiocesium in soil and determining the ability of soil to fix radiocesium are important research topics. The capacity and selectivity for <sup>137</sup>Cs sorption in soil is evaluated on the basis of the radiocesium interception potential (RIP). Here, we measured the RIP of 925 farmland soil samples collected from Fukushima Prefecture and surrounding regions and plotted the values on a soil classification map and a surface geological map. The RIP values ranged from 73 to 12700 mmol kg<sup>−1</sup>, and a wide range was also observed among samples with identical soil types and geological features; however, the RIP values were significantly low for Andosols (P ≤ 0.05). In addition, soils that did not contain vermiculite, illite and smectite had low RIP values. All measured RIP values were negatively correlated with the total C content and phosphate absorption capacity and positively correlated with the clay, silt, and exchangeable K and Ca content (P ≤ 0.01). However, the relationship between the RIP and the measured soil properties, except for the exchangeable K content, is strongly dependent on the soil classification and clay mineral composition. Therefore, the soil properties that most significantly influence the RIP values are probably differences in the soil parent materials, which influence the soil classification and clay mineral composition.
DOI: 10.6084/m9.figshare.4978928.v2
title: Radiocesium interception potential of agricultural soils in northeast Japan

description: The health risks associated with the long-term intake of radiocesium from food have been of great concern since the Fukushima Daiichi Nuclear Power Station accident in 2011. Therefore, evaluating the phytoavailability and mobility of radiocesium in soil and determining the ability of soil to fix radiocesium are important research topics. The capacity and selectivity for <sup>137</sup>Cs sorption in soil is evaluated on the basis of the radiocesium interception potential (RIP). Here, we measured the RIP of 925 farmland soil samples collected from Fukushima Prefecture and surrounding regions and plotted the values on a soil classification map and a surface geological map. The RIP values ranged from 73 to 12700 mmol kg<sup>−1</sup>, and a wide range was also observed among samples with identical soil types and geological features; however, the RIP values were significantly low for Andosols (P ≤ 0.05). In addition, soils that did not contain vermiculite, illite and smectite had low RIP values. All measured RIP values were negatively correlated with the total C content and phosphate absorption capacity and positively correlated with the clay, silt, and exchangeable K and Ca content (P ≤ 0.01). However, the relationship between the RIP and the measured soil properties, except for the exchangeable K content, is strongly dependent on the soil classification and clay mineral composition. Therefore, the soil properties that most significantly influence the RIP values are probably differences in the soil parent materials, which influence the soil classification and clay mineral composition.
DOI: 10.6084/m9.figshare.4978928.v1
title: Radiocesium interception potential of agricultural soils in northeast Japan

description: The health risks associated with the long-term intake of radiocesium from food have been of great concern since the Fukushima Daiichi Nuclear Power Station accident in 2011. Therefore, evaluating the phytoavailability and mobility of radiocesium in soil and determining the ability of soil to fix radiocesium are important research topics. The capacity and selectivity for <sup>137</sup>Cs sorption in soil is evaluated on the basis of the radiocesium interception potential (RIP). Here, we measured the RIP of 925 farmland soil samples collected from Fukushima Prefecture and surrounding regions and plotted the values on a soil classification map and a surface geological map. The RIP values ranged from 73 to 12700 mmol kg<sup>−1</sup>, and a wide range was also observed among samples with identical soil types and geological features; however, the RIP values were significantly low for Andosols (P ≤ 0.05). In addition, soils that did not contain vermiculite, illite and smectite had low RIP values. All measured RIP values were negatively correlated with the total C content and phosphate absorption capacity and positively correlated with the clay, silt, and exchangeable K and Ca content (P ≤ 0.01). However, the relationship between the RIP and the measured soil properties, except for the exchangeable K content, is strongly dependent on the soil classification and clay mineral composition. Therefore, the soil properties that most significantly influence the RIP values are probably differences in the soil parent materials, which influence the soil classification and clay mineral composition.
DOI: 10.6084/m9.figshare.4978298
title: Reanalysis of the phylogenetic status of <i>Nipponosaurus sachalinensis</i> (Ornithopoda: Dinosauria) from the Late Cretaceous of Southern Sakhalin

description: <i>Nipponosaurus sachalinensis</i> is the only definitive lambeosaurine hadrosaurid from Sakhalin Island of Russia. Previous studies suggested it was a member of Lambeosaurini (derived lambeosaurines). However, its phylogenetic status within Lambeosaurini remains controversial. In addition, some studies argued the juvenile ontogenetic stage of the holotype and regarded <i>Nipponosaurus</i> as an invalid taxon. In order to solve these problems, its definite growth stage is determined through histological studies. Absence of a line of arrested growth, presence of osteons with large vascular spaces, and presence of primary bone remnants even in the highly modified regions of the femur confirm that the holotype was a juvenile. More than a hundred of the 350 characters used to determine the phylogenetic position of <i>Nipponosaurus</i> are ontogenetically variable characters based on the different ontogenetic stages of <i>Hypacrosaurus stebingeri</i>. Our phylogenetic analysis reveals that <i>Nipponosaurus</i> is a basal lambeosaurine hadrosaurid, much further down in the tree than previously suggested, and shows a polytomy with <i>Blasisaurus</i> and <i>Arenyisaurus</i>. This study also indicates that <i>Nipponosaurus</i> is a valid taxon because it possesses unique characters within the Lambeosaurinae (presence of massive surangular anterodorsal process, presence of lateral shelf of the dentary, and a relatively short ulna), which are independent of ontogeny.
DOI: 10.6084/m9.figshare.4978280
title: Two new early balognathid conodont genera from the Ordovician of Oman and comments on the early evolution of prioniodontid conodonts

description: Reports of Ordovician conodonts from the Arabian region of the Gondwanan margin are extremely rare. Here we provide a description of the apparatus of two new conodont genera and species, <i>Aldridgeognathus manniki</i> and <i>Omanognathus daiqaensis</i>, based on discrete elements recovered from the Am5 Member of the Amdeh Formation, Darriwilian, Ordovician of the Sultanate of Oman. The apparatuses contain 17 and 15 elements, respectively, and both possess three pairs of P elements. The apparatus structure of <i>Omanognathus</i> is similar to the bedding plane assemblage-defined genus <i>Notiodella</i> (= <i>Icriodella</i>) but differs in that as yet only 15 elements rather than 17 have been identified. <i>Aldridgeognathus</i> has similar P elements to the early Silurian apparatus <i>Pranognathus</i> but differs in the possession of a geniculate M element and a <i>Baltoniodus</i>-like S element array. <i>Aldridgeognathus</i> does not easily fit with either the 17-element <i>Notiodella</i> (<i>Icriodella</i>) or the 19-element <i>Promissum</i> templates and suggests that there may be other 17-element Ordovician apparatus templates with very similar or duplicated elements in the P element positions. A cladistic analysis based on the data set of Donoghue (2008) confirms that both new genera should be classified with the Balognathidae and suggests that they, along with another newly described three P element bearing genus <i>Arianagnathus</i>, are more derived than <i>Baltioniodus</i> and <i>Prioniodus</i> but ancestral to <i>Icriodella</i>, <i>Sagittodontina</i>, <i>Promissum</i> and <i>Notiodella</i>. The exact position of <i>Aldridgeognathus</i> is not well resolved in respect to the newly described <i>Arianagnathus</i> or <i>Omanognathus</i>. These new taxa add little to attempts to correlate the Arabian Peninsula with other palaeogeographic regions, but may prove useful for future correlation within the region and provide data to test the hypothesis of Dzik (2015) that the origins for prioniodontid conodonts lie in high latitudes during the Ordovician. http://zoobank.org/urn:lsid:zoobank.org:pub:84C8267D-76E8-4DD3-92F3-0B72CA976DEC
DOI: 10.6084/m9.figshare.4978280.v1
title: Two new early balognathid conodont genera from the Ordovician of Oman and comments on the early evolution of prioniodontid conodonts

description: Reports of Ordovician conodonts from the Arabian region of the Gondwanan margin are extremely rare. Here we provide a description of the apparatus of two new conodont genera and species, <i>Aldridgeognathus manniki</i> and <i>Omanognathus daiqaensis</i>, based on discrete elements recovered from the Am5 Member of the Amdeh Formation, Darriwilian, Ordovician of the Sultanate of Oman. The apparatuses contain 17 and 15 elements, respectively, and both possess three pairs of P elements. The apparatus structure of <i>Omanognathus</i> is similar to the bedding plane assemblage-defined genus <i>Notiodella</i> (= <i>Icriodella</i>) but differs in that as yet only 15 elements rather than 17 have been identified. <i>Aldridgeognathus</i> has similar P elements to the early Silurian apparatus <i>Pranognathus</i> but differs in the possession of a geniculate M element and a <i>Baltoniodus</i>-like S element array. <i>Aldridgeognathus</i> does not easily fit with either the 17-element <i>Notiodella</i> (<i>Icriodella</i>) or the 19-element <i>Promissum</i> templates and suggests that there may be other 17-element Ordovician apparatus templates with very similar or duplicated elements in the P element positions. A cladistic analysis based on the data set of Donoghue (2008) confirms that both new genera should be classified with the Balognathidae and suggests that they, along with another newly described three P element bearing genus <i>Arianagnathus</i>, are more derived than <i>Baltioniodus</i> and <i>Prioniodus</i> but ancestral to <i>Icriodella</i>, <i>Sagittodontina</i>, <i>Promissum</i> and <i>Notiodella</i>. The exact position of <i>Aldridgeognathus</i> is not well resolved in respect to the newly described <i>Arianagnathus</i> or <i>Omanognathus</i>. These new taxa add little to attempts to correlate the Arabian Peninsula with other palaeogeographic regions, but may prove useful for future correlation within the region and provide data to test the hypothesis of Dzik (2015) that the origins for prioniodontid conodonts lie in high latitudes during the Ordovician. http://zoobank.org/urn:lsid:zoobank.org:pub:84C8267D-76E8-4DD3-92F3-0B72CA976DEC
DOI: 10.6084/m9.figshare.4978223
title: DataBase_to Models.xlsx

description: Vasconcelos et al. (in press). Combining molecular and landscape tools for targeting evolutionary processes in reserve design: an approach for islands. PLOS One
DOI: 10.6084/m9.figshare.4978223.v1
title: DataBase_to Models.xlsx

description: Vasconcelos et al. (in press). Combining molecular and landscape tools for targeting evolutionary processes in reserve design: an approach for islands. PLOS One
DOI: 10.6084/m9.figshare.4978208.v1
title: Flash presentations

description: Slides from the flash presentations from the 18th IWA-UK Young Water Professionals conference<br>
DOI: 10.6084/m9.figshare.4978145
title: Association results of neuroblastoma subtypes

description: Association results of 11q-deletion neuroblastoma (discovery)Association results of 11q-deletion neuroblastoma (replication)<br>Association results of 1p-deletion neuroblastoma (discovery)<br>Association results of MNA neuroblastoma (discovery)<br>
DOI: 10.6084/m9.figshare.4978166
title: Mangroves Species Occurrence Data in Central Cebu, Philippines

description: The specifies the coordinates of the different mangroves species found in Central Cebu, Philippines.<br>
DOI: 10.6084/m9.figshare.4978136
title: Raw Sequencing Data for Vestibular Schwannoma

description: Raw MiSeq sequencing output provided in FASTQ format for vestibular schwannoma (VS). <br>Each run creates three files (ending in R1, R2, or R3); the files ending in R2 are used to remove duplicates created as a result of Haloplex HS preparation while R1 and R3 are paired-end reads. Each file also indicates the VS number with which the sequencing data are associated (beginning with VS_1, VS_2, etc.).
DOI: 10.6084/m9.figshare.4978166.v1
title: Mangroves Species Occurrence Data in Central Cebu, Philippines

description: The specifies the coordinates of the different mangroves species found in Central Cebu, Philippines.<br>
DOI: 10.6084/m9.figshare.4978040
title: Atures Rock Art RTI

description: This dataset contains the inputs and outputs of four sessions of reflectance transformation imaging data capture carried out during the 2016 in the Atures Rapids, Amazonas state, Venezuela.<br>This data is partially discussed in a published paper in Antiquity:<br><br><br>The folders within this dataset correspond to locations named in the Antiquity paper (Figure 1). <br><br>Files with the prefix "DSC_" were shot in manual mode with a Nikon D3100 DSLR in raw .NEF format, and processed into a lossless image format (.png) in RawTherapee 4.2.447 with default settings. The original files are available upon request, but were prohibitively large to include in this archive.<br>Data capture was aided with a handheld Yongnuo YN560 II flash paired with a set of four Yongnuo RF-603 wireless triggers. <br>The Flutist is located in the Upper panel of Picure Island, West, while the Face and Zoomorph are located in the East section of the same panel. The circle is in the easternmost sector of Raudal Yavarivén. With the exception of the circle, which was shot in overcast conditions, all data capture occurred at night.<br>Photographic metadata (ISO, f-stop, focal length, exposure) accompanies the files.<br>
DOI: 10.6084/m9.figshare.4978145.v1
title: 11q_dis_ass.assoc

description: Association results of 11q-deletion neuroblastoma (discovery)
DOI: 10.6084/m9.figshare.4978013
title: Atures Rock Art photography

description: This dataset combines photography of engraved rock art collected during the 2016 and 2017 field seasons in the Atures Rapids and Cerro Pintado. <br>A full contextualisation of this data and accompanying discussion is published in Antiquity: <br><br><br>The folders within this dataset correspond to the locations named in the Antiquity paper (Figure 1). <br><br>Files with the prefix "DSC_" were shot with a Nikon D3100 DSLR in raw .NEF format and processed into a lossless image format (.png) in RawTherapee 4.2.447 with default settings. The original files are available upon request, but were prohibitively large to include in this archive.<br>Files with the "WP_" prefix were taken as reference photos with a Nokia Lumia 920 smartphone. Those with "DJI" are aerial images taken with the standard camera on a DJI Phantom 2 Vision+ drone. Drone imagery in the three subfolders of the Picure folder are the source data used in Agisoft Photoscan Pro 1.3.1 to produce the following datasets included in this collection:<br>"Picure Island Upper Petroglyph Panel West""Picure Island Upper Petroglyph Panel East""Picure Island Lower Petroglyph Panel"<br>Photographic metadata (ISO, f-stop, focal length, exposure) including GPS coordinates in the cases of the smartphone and the drone, accompanies the files.<br><br>
DOI: 10.6084/m9.figshare.4978145.v2
title: 11q_dis_ass.assoc

description: Association results of 11q-deletion neuroblastoma (discovery)
DOI: 10.6084/m9.figshare.4978001
title: High School Biology Teachers manuscript raw data.sav

description: This quantitative online survey samples high school biology teachers in Maryland (n=74) to evaluate their personal experience with genetic counselors, as well as the impact that experience has on genetics instruction and the inclusion of genetic counseling in lesson plans. Results suggest that personal experience with a genetic counselor may impact the frequency that the field is discussed outside of a genetic counseling setting. Specifically, it had a significant effect on if a teacher discusses genetic counseling as a potential career with students during the genetics unit (p=0.047), if a teacher would suggest genetic counseling to a student as a potential career (p=0.03), if a teacher has mentioned genetic counseling as a potential career to a student before (p=0.019) and if a teacher would feel comfortable explaining the career of genetic counseling to a student (p=0.001).