cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9974249
title: Particle simulation, wind speed, surface current, wave height, and depth on July 13, 15, and 17, 2014

description: This work showed the nearshore dynamics for Lake Michigan and its nearshore area by using observations and modeling system. Few drifter experiments had been done in the Great Lakes system, and even few were coupled with a model to show the dynamics. The nearshore Great Lakes system was given detailed investigation during this study.
DOI: 10.6084/m9.figshare.9974165
title: Seasonal-mean summer circulation of Lake Michigan (LM) and Grand Haven (GH) in 2014 driven by various factors

description: This work showed the nearshore dynamics for Lake Michigan and its nearshore area by using observations and modeling system. Few drifter experiments had been done in the Great Lakes system, and even few were coupled with a model to show the dynamics. The nearshore Great Lakes system was given detailed investigation during this study.
DOI: 10.6084/m9.figshare.9974237.v1
title: lotus_filtered_snps.vcf.rar

description: The called variants in VCF format.
DOI: 10.6084/m9.figshare.9974252.v1
title: Virtural particle experiments released near the lake's southeastern coast in July, August, and September 2014

description: This work showed the nearshore dynamics for Lake Michigan and its nearshore area by using observations and modeling system. Few drifter experiments had been done in the Great Lakes system, and even few were coupled with a model to show the dynamics. The nearshore Great Lakes system was given detailed investigation during this study.
DOI: 10.17608/k6.auckland.9974162
title: Seismic anisotropy and its impact on imaging the Alpine Fault: an experimental and modeling perspective

description: This it the dataset linked to publication: <br>Seismic anisotropy and its impact on imaging the Alpine Fault: an experimental and modeling perspective<br>Ludmila Adam, Marcel Frehner, Katrina Sauer, Virginia Toy, and Simon Guerin-Marthe<br>
DOI: 10.6084/m9.figshare.9974165.v1
title: Seasonal-mean summer circulation of Lake Michigan (LM) and Grand Haven (GH) in 2014 driven by various factors

description: This work showed the nearshore dynamics for Lake Michigan and its nearshore area by using observations and modeling system. Few drifter experiments had been done in the Great Lakes system, and even few were coupled with a model to show the dynamics. The nearshore Great Lakes system was given detailed investigation during this study.
DOI: 10.6084/m9.figshare.9974249.v1
title: Particle simulation, wind speed, surface current, wave height, and depth on July 13, 15, and 17, 2014

description: This work showed the nearshore dynamics for Lake Michigan and its nearshore area by using observations and modeling system. Few drifter experiments had been done in the Great Lakes system, and even few were coupled with a model to show the dynamics. The nearshore Great Lakes system was given detailed investigation during this study.
DOI: 10.6084/m9.figshare.9974159
title: Simulated particle trajectories in the summer of 2014 under various conditions

description: This work showed the nearshore dynamics for Lake Michigan and its nearshore area by using observations and modeling system. Few drifter experiments had been done in the Great Lakes system, and even few were coupled with a model to show the dynamics. The nearshore Great Lakes system was given detailed investigation during this study.
DOI: 10.6084/m9.figshare.9974159.v1
title: Simulated particle trajectories in the summer of 2014 under various conditions

description: This work showed the nearshore dynamics for Lake Michigan and its nearshore area by using observations and modeling system. Few drifter experiments had been done in the Great Lakes system, and even few were coupled with a model to show the dynamics. The nearshore Great Lakes system was given detailed investigation during this study.
DOI: 10.17608/k6.auckland.9974162.v2
title: Seismic anisotropy and its impact on imaging the Alpine Fault: an experimental and modeling perspective

description: This it the dataset linked to publication: <br>Seismic anisotropy and its impact on imaging the Alpine Fault: an experimental and modeling perspective<br>Ludmila Adam, Marcel Frehner, Katrina Sauer, Virginia Toy, and Simon Guerin-Marthe<br>
DOI: 10.17608/k6.auckland.9974162.v1
title: Seismic anisotropy and its impact on imaging the Alpine Fault: an experimental and modeling perspective

description: This it the dataset linked to publication: <br>Seismic anisotropy and its impact on imaging the Alpine Fault: an experimental and modeling perspective<br>Ludmila Adam, Marcel Frehner, Katrina Sauer, Virginia Toy, and Simon Guerin-Marthe<br>
DOI: 10.6084/m9.figshare.9973970
title: MOESM2 of Predictive performance of the estimating equations of renal function in Sri Lankan subjects

description: Additional file 2. The data set of the study (SPSS Format).
DOI: 10.6084/m9.figshare.9973970.v1
title: MOESM2 of Predictive performance of the estimating equations of renal function in Sri Lankan subjects

description: Additional file 2. The data set of the study (SPSS Format).
DOI: 10.6084/m9.figshare.9973766
title: MOESM2 of Impact of low sperm competition on male reproductive trait allometries in a bush-cricket

description: Additional file 2. Raw data.
DOI: 10.6084/m9.figshare.9973766.v1
title: MOESM2 of Impact of low sperm competition on male reproductive trait allometries in a bush-cricket

description: Additional file 2. Raw data.
DOI: 10.6084/m9.figshare.9973712
title: Rainfall data sets of Chaohu City,China.xlsx

description: These data sets are provided by the Water Resources Department of Anhui Province, China.They can provide data support for the simulation of urban drainage system in Chaohu city.
DOI: 10.6084/m9.figshare.9973706
title: Time series of hourly wind speed and direction during July-September 2014 at various NDBC buoy stations

description: This work showed the nearshore dynamics for Lake Michigan and its nearshore area by using observations and modeling system. Few drifter experiments had been done in the Great Lakes system, and even few were coupled with a model to show the dynamics. The nearshore Great Lakes system was given detailed investigation during this study.
DOI: 10.6084/m9.figshare.9973709
title: Simulated particle trajectories in the summer of 2014 and 2015

description: This work showed the nearshore dynamics for Lake Michigan and its nearshore area by using observations and modeling system. Few drifter experiments had been done in the Great Lakes system, and even few were coupled with a model to show the dynamics. The nearshore Great Lakes system was given detailed investigation during this study.
DOI: 10.6084/m9.figshare.9973712.v1
title: Rainfall data sets of Chaohu City,China.xlsx

description: These data sets are provided by the Water Resources Department of Anhui Province, China.They can provide data support for the simulation of urban drainage system in Chaohu city.
DOI: 10.6084/m9.figshare.9973706.v1
title: Time series of hourly wind speed and direction during July-September 2014 at various NDBC buoy stations

description: This work showed the nearshore dynamics for Lake Michigan and its nearshore area by using observations and modeling system. Few drifter experiments had been done in the Great Lakes system, and even few were coupled with a model to show the dynamics. The nearshore Great Lakes system was given detailed investigation during this study.
DOI: 10.6084/m9.figshare.9973709.v1
title: Simulated particle trajectories in the summer of 2014 and 2015

description: This work showed the nearshore dynamics for Lake Michigan and its nearshore area by using observations and modeling system. Few drifter experiments had been done in the Great Lakes system, and even few were coupled with a model to show the dynamics. The nearshore Great Lakes system was given detailed investigation during this study.
DOI: 10.6084/m9.figshare.9973688
title: Spatial NNM wind fields on the day when drifters are released in Grand Haven (GH) of Lake Michigan (LM)

description: This work showed the nearshore dynamics for Lake Michigan and its nearshore area by using observations and modeling system. Few drifter experiments had been done in the Great Lakes system, and even few were coupled with a model to show the dynamics. The nearshore Great Lakes system was given detailed investigation during this study.
DOI: 10.6084/m9.figshare.9973688.v1
title: Spatial NNM wind fields on the day when drifters are released in Grand Haven (GH) of Lake Michigan (LM)

description: This work showed the nearshore dynamics for Lake Michigan and its nearshore area by using observations and modeling system. Few drifter experiments had been done in the Great Lakes system, and even few were coupled with a model to show the dynamics. The nearshore Great Lakes system was given detailed investigation during this study.
DOI: 10.6084/m9.figshare.9973631
title: Community structure – ecosystem function relationships in the Congo Basin methane cycle depend on the physiological scale of function. Meyer et al. 2020 MolEcol.

description: This is the dataset corresponding to Meyer et al. 2020. Molecular Ecology. Community structure – ecosystem function relationships in the Congo Basin methane cycle depend on the physiological scale of function. Please cite this manuscript when using any of these archived contents.<br>Sequences are of the V4 region of the 16S SSU rRNA gene, and were amplified using the 515F-806R primer combination.<br><br>Included here are:1) Quality-filtered fasta files 'seqs.filtered.fasta.gz'2) Meta data file with sample specific barcodes, biogeochemical process rates, soil chemical variables, and habitat category (see below for further details) 'MetaDataMolEcol_archive.txt'3) ASV community matrix of RNA- and DNA-based 16S rRNA gene sequences '16S_ASV_table_MolEcol.txt'4) ASV community matrix of RNA- and DNA-based 16S rRNA gene sequences, subsetted for known methanogens and methanotrophs '16S_Methanotroph_gen_subset_table_MolEcol.txt'5) qPCR data of mcrA gene abundances 'mcrA_qpcr.txt'6) qPCR data of pmoA gene abundances 'pmoA_qpcr.txt'7) Example of R code used to generate results of Meyer et al. 2020 Mol Ecol. 'Meyer_et_al_MolEcol_2020_analysis_example.R'8) Custom R functions that correspond to R code in item 7: 'Rarefy_mean.R' and 'NeedInHaystack_function.R'<br>The following meta data columns correspond to the biogeochemical processes presented in Meyer et al. 2020: 'CH4' is the rate of gross methanogenesis, 'H_CH4_percent' is the percent predominance of the hydrogenotrophic pathway, 'low_final_k' is the rate of high-affinity methanotrophy, and 'Vmax' is the rate of gross methanotrophy. Soil physico-chemical variables include: bulk density 'Bulk_dens', soil moisture content 'Mois_cont', pH 'pH', percent carbon 'C_percent', and percent nitrogen 'N_percent'. See publication for further details.
DOI: 10.6084/m9.figshare.9973703.v1
title: Mouse filtered anatomy-based gene networks

description: This contains the mouse anatomy-based gene networks for the four semantic similarity methods filtered by the gene similarity score cutoffs given below.<br><br>Lin anatomy-based gene network filtered by 0.9 gene similarity score cutoff<br>Resnik anatomy-based gene network filtered by 0.32 gene similarity score cutoff<br><br>Schlicker anatomy-based gene network filtered by 0.41 gene similarity score cutoff<br><br>Wang anatomy-based gene network filtered by 0.95 gene similarity score cutoff<br><br><br><br><br>
DOI: 10.6084/m9.figshare.9973610
title: UNTITLED
DOI: 10.6084/m9.figshare.9973610.v2
title: HIF1 Project

description: HIF1 PROJECT DATA
DOI: 10.6084/m9.figshare.9973610.v4
title: HIF1 Project

description: HIF1 PROJECT DATA
DOI: 10.6084/m9.figshare.9973610.v3
title: HIF1 Project

description: HIF1 PROJECT DATA
DOI: 10.6084/m9.figshare.9973331
title: Differentially expressed v1

description: we calculated abundance estimation for each sample against assembly sequences using RSEM software. Deseq2 software was used to compare the gene expression across samples. <br>
DOI: 10.6084/m9.figshare.9973301
title: High seroprevalence and seroconversion rate of Borrelia burgdorferi infection among Hispanic/Latino immigrant workers in Eastern Suffolk County, New York: A longitudinal-based study

description: Lyme disease, caused by Borrelia burgdorferi, continues to be the most commonly reported vector-borne disease in the United States (US) affecting the public health and the economy. Suffolk County, New York (NY) has one of the highest incidence in NY State affecting primarily the Hispanic/Latino population working ingardening, landscaping, and agriculture (field workers). However, there is a paucity of research among this population. Thus, the aim of this longitudinal study was to assess the current seroprevalence and seroconversion of the <i>Borrelia burgdorferi</i> infection and its risk factors such as sociodemographic, symptoms, tick encounter, and use of the Fatigue Severity Scale, associated with seropositivity in the Hispanic/Latino immigrant worker population of Eastern Suffolk County. Recruitment of participants were based on several towns of this County. Following signed informed consent, participants completed a questionnaire and had their blood drawn. Samples were tested using the conventional 2-tiered serological testing for Borreliosis. <br>
DOI: 10.6084/m9.figshare.9971891
title: Supp_File1_RedClover_200SNPs_121.txt

description: Genomic sequences of initial set of 200 fragments containing SNPs identified by comparing the Cherokee genomic sequences to draft genome of red clover. The genomic sequences were from the Cherokee variety of red clover.
DOI: 10.6084/m9.figshare.9971885
title: Supp_Table1_primer_info.xls

description: Sequences of primers used for validation using genomic DNA and cDNA.
DOI: 10.6084/m9.figshare.9971891.v1
title: Supp_File1_RedClover_200SNPs_121.txt

description: Genomic sequences of initial set of 200 fragments containing SNPs identified by comparing the Cherokee genomic sequences to draft genome of red clover. The genomic sequences were from the Cherokee variety of red clover.
DOI: 10.6084/m9.figshare.9971882
title: Supp_Table2_MonsterPlex_genotypes.xls

description: SNPs confirmed using targeted genomic amplicon sequencing. Red clover genotypes used in the study is listed in the first column. Beginning at second column, SNPs labels were listed at the top of each column. For each SNP label, the locus is indicated by the information before the last “_” (under-score sign). The numbers right after the last “_” (under-score sign) indicate the location of identified SNPs in that locus.
DOI: 10.6084/m9.figshare.9971888
title: Supp_Table3_plant_material.xlsx

description: Plant materials used in targeted amplicon sequencing and confirmation of SNPs identified using RNAseq data.
DOI: 10.6084/m9.figshare.9973331.v2
title: Differentially expressed v1

description: we calculated abundance estimation for each sample against assembly sequences using RSEM software. Deseq2 software was used to compare the gene expression across samples. <br>
DOI: 10.6084/m9.figshare.9971879
title: Supp_file_3.pdf

description: Sequence alignment of RNA-seq identified SNPs. The alignment for each locus included sequences from the following three sources: reference sequence (with RefSeq in the label), sequence generated using genomic DNA (with gDNA in the label), sequence generated using cDNA (with cDNA in the label).
DOI: 10.6084/m9.figshare.9971885.v1
title: Supp_Table1_primer_info.xls

description: Sequences of primers used for validation using genomic DNA and cDNA.
DOI: 10.6084/m9.figshare.9971888.v1
title: Supp_Table3_plant_material.xlsx

description: Plant materials used in targeted amplicon sequencing and confirmation of SNPs identified using RNAseq data.
DOI: 10.6084/m9.figshare.9971876
title: Supp_File_2_combined_SNPeff.xlsx

description: The vcf file of 69,975 confident SNPs
DOI: 10.6084/m9.figshare.9973331.v1
title: Differentially expressed

description: we calculated abundance estimation for each sample against assembly sequences using RSEM software. Deseq2 software was used to compare the gene expression across samples. <br>
DOI: 10.6084/m9.figshare.9971882.v1
title: Supp_Table2_MonsterPlex_genotypes.xls

description: SNPs confirmed using targeted genomic amplicon sequencing. Red clover genotypes used in the study is listed in the first column. Beginning at second column, SNPs labels were listed at the top of each column. For each SNP label, the locus is indicated by the information before the last “_” (under-score sign). The numbers right after the last “_” (under-score sign) indicate the location of identified SNPs in that locus.
DOI: 10.6084/m9.figshare.9971879.v1
title: Supp_file_3.pdf

description: Sequence alignment of RNA-seq identified SNPs. The alignment for each locus included sequences from the following three sources: reference sequence (with RefSeq in the label), sequence generated using genomic DNA (with gDNA in the label), sequence generated using cDNA (with cDNA in the label).
DOI: 10.6084/m9.figshare.9971876.v1
title: Supp_File_2_combined_SNPeff.xlsx

description: The vcf file of 69,975 confident SNPs
DOI: 10.6084/m9.figshare.9971711
title: Metadata record for: Complete genome sequence of Sphingomonas paucimobilis AIMST S2, a xenobiotic-degrading bacterium

description: This dataset contains key characteristics about the data described in the Data Descriptor Complete genome sequence of Sphingomonas paucimobilis AIMST S2, a xenobiotic-degrading bacterium. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format<br><br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9971639
title: Assessment of heavy metals in calcium carbide treated mangoes by inductively coupled plasma-mass spectrometry (ICP-MS)

description: Calcium carbide (CaC<sub>2</sub>) is widely used as the low price artificial ripening agent of fruits. It may contain traces of heavy metals which can make fruits harmful for human consumption. This study aimed to assess heavy metals present in commercial-grade CaC<sub>2</sub> and subsequently their quantification in mango peels for the identification of possible marker elements as an indicator of CaC<sub>2</sub> ripening. Samples were prepared by using microwave-assisted digestion followed by multi-elemental quantitative analysis using inductively coupled plasma-mass spectrometry (ICP-MS). In commercial grade CaC<sub>2</sub> samples, the concentrations of analysed metals were found to be in the range of 0.6–540.92 µg/g with given order Fe&gt;Zn&gt;Mn&gt;Cr&gt;Pb&gt;Cu&gt;Ag&gt;As&gt;Ni&gt;Co&gt;Cd. The CaC<sub>2</sub>-treated mango peels showed elevated levels of Fe, Co, As, and Pb in comparison to untreated mango peels (<i>p</i>
DOI: 10.6084/m9.figshare.9971642
title: GPS and DD sheep data.

description: The data were collected from one sheep in Bariloche, Argentina, during February and March of 2019. The contains information of a GPS (CatLog-B, Perthold Engineering, www.perthold.de; USA), that was programmed to record location data every five minutes, and a DailyDiary, that was programmed to record 40 acceleration data per second (frequency of 40Hz) and 13 magnetometer data per second (frequency of 13Hz)
DOI: 10.6084/m9.figshare.9971639.v1
title: Assessment of heavy metals in calcium carbide treated mangoes by inductively coupled plasma-mass spectrometry (ICP-MS)

description: Calcium carbide (CaC<sub>2</sub>) is widely used as the low price artificial ripening agent of fruits. It may contain traces of heavy metals which can make fruits harmful for human consumption. This study aimed to assess heavy metals present in commercial-grade CaC<sub>2</sub> and subsequently their quantification in mango peels for the identification of possible marker elements as an indicator of CaC<sub>2</sub> ripening. Samples were prepared by using microwave-assisted digestion followed by multi-elemental quantitative analysis using inductively coupled plasma-mass spectrometry (ICP-MS). In commercial grade CaC<sub>2</sub> samples, the concentrations of analysed metals were found to be in the range of 0.6–540.92 µg/g with given order Fe&gt;Zn&gt;Mn&gt;Cr&gt;Pb&gt;Cu&gt;Ag&gt;As&gt;Ni&gt;Co&gt;Cd. The CaC<sub>2</sub>-treated mango peels showed elevated levels of Fe, Co, As, and Pb in comparison to untreated mango peels (<i>p</i>
DOI: 10.6084/m9.figshare.9971711.v2
title: Metadata record for: Complete genome sequence of Sphingomonas paucimobilis AIMST S2, a xenobiotic-degrading bacterium

description: This dataset contains key characteristics about the data described in the Data Descriptor Complete genome sequence of Sphingomonas paucimobilis AIMST S2, a xenobiotic-degrading bacterium. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format<br><br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9971711.v1
title: Metadata record for: Complete genome sequence of Sphingomonas paucimobilis AIMST S2, a xenobiotic-degrading bacterium

description: This dataset contains key characteristics about the data described in the Data Descriptor Complete genome sequence of Sphingomonas paucimobilis AIMST S2, a xenobiotic-degrading bacterium. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.9971615
title: Chien-Wen raw data metabolites.xlsx

description: metabolite data
DOI: 10.6084/m9.figshare.12866999.v1
title: Supplementary Figure_SetA_clustering in SCAtutorial

description: Datasets used to assemble Figure SetA clustering shown in SCAtutorial vignette (https://kendomaniac.github.io/SCAtutorial/articles/SCAvignette.html)
DOI: 10.6084/m9.figshare.12866999
title: Supplementary Figure_SetA_clustering in SCAtutorial

description: Datasets used to assemble Figure SetA clustering shown in SCAtutorial vignette (https://kendomaniac.github.io/SCAtutorial/articles/SCAvignette.html)
DOI: 10.6084/m9.figshare.9971642.v3
title: GPS and DD sheep data.

description: The data were collected from one sheep in Bariloche, Argentina, during February and March of 2019. The contains information of a GPS (CatLog-B, Perthold Engineering, www.perthold.de; USA), that was programmed to record location data every five minutes, and a DailyDiary, that was programmed to record 40 acceleration data per second (frequency of 40Hz) and 13 magnetometer data per second (frequency of 13Hz)
DOI: 10.6084/m9.figshare.9971564
title: Quantification

description: rsem quantification<br>
DOI: 10.6084/m9.figshare.9971615.v2
title: Chien-Wen raw data metabolites.xlsx

description: metabolite data
DOI: 10.6084/m9.figshare.9971549
title: Metadata record for: Room-level occupant counts and environmental quality from heterogeneous sensing modalities in a smart building

description: This dataset contains key characteristics about the data described in the Data Descriptor Room-level occupant counts and environmental quality from heterogeneous sensing modalities in a smart building. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format<br><br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9971615.v1
title: Chien-Wen raw data metabolites.xlsx

description: metabolite data