cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5036177
title: Dataset for the paper SocialPreferences Financial Literacy And Intertemporal Choice

description: Dataset for the paper Social Preferences, Financial Literacy and Intertemporal Choice
DOI: 10.6084/m9.figshare.5036189
title: “And I'm wondering how I'll get down those stairs”: The transparency agenda and qualitative research

description: Presentation at the IASSIST Meeting, May 2017, Lawrence, KS<br>
DOI: 10.6084/m9.figshare.5036144
title: Eolacertidae: a new extinct clade of lizards from the Palaeogene; with comments on the origin of the dominant European reptile group – Lacertidae

description: We describe a new lizard taxon, <i>Stefanikia siderea</i> gen. et sp. nov., from the early-middle Eocene locality of Messel in Germany based on a nearly complete skeleton, which we studied using μCT methods. It shares many characters with the Eocene taxon <i>Eolacerta</i>, which is broadly distributed in the Eocene of central and Western Europe, but is much smaller and shows several important anatomical differences. The new discovery sheds light on the paleodiversity of these lizards in the Eocene of Europe, and the new family name Eolacertidae is proposed to encompass <i>Eolacerta</i> and <i>Stefanikia</i>. The relationships of <i>Eolacerta</i> have been intractable. Our phylogenetic analyses confirm that Eolacertidae is a member of the clade Lacertiformes and provide strong support for a sister-group relationship to Lacertidae. In some places, skin impressions are preserved, displaying the body scalation. As such, the exquisitely preserved specimens of Eolacertidae from Messel provide new insight into the morphology and ecology of lizards on the stem of Lacertidae, Europe’s dominant group of living reptiles. http://zoobank.org/urn:lsid:zoobank.org:pub:DFD01563-A913-4286-B64B-E0912474FD08
DOI: 10.6084/m9.figshare.5036153
title: Script to select random sequences from PaVE database

description: 1) download sequences and table from PaVE2) run script3) Manually add PaPV2 sequences to each file
DOI: 10.6084/m9.figshare.5036177.v1
title: DatasetForThePaperSocialPreferencesFinancialLiteracyAndIntertemporalChoice.xlsx

description: Dataset for the paper Social Preferences, Financial Literacy and Intertemporal Choice
DOI: 10.6084/m9.figshare.5036144.v1
title: Eolacertidae: a new extinct clade of lizards from the Palaeogene; with comments on the origin of the dominant European reptile group – Lacertidae

description: We describe a new lizard taxon, <i>Stefanikia siderea</i> gen. et sp. nov., from the early-middle Eocene locality of Messel in Germany based on a nearly complete skeleton, which we studied using μCT methods. It shares many characters with the Eocene taxon <i>Eolacerta</i>, which is broadly distributed in the Eocene of central and Western Europe, but is much smaller and shows several important anatomical differences. The new discovery sheds light on the paleodiversity of these lizards in the Eocene of Europe, and the new family name Eolacertidae is proposed to encompass <i>Eolacerta</i> and <i>Stefanikia</i>. The relationships of <i>Eolacerta</i> have been intractable. Our phylogenetic analyses confirm that Eolacertidae is a member of the clade Lacertiformes and provide strong support for a sister-group relationship to Lacertidae. In some places, skin impressions are preserved, displaying the body scalation. As such, the exquisitely preserved specimens of Eolacertidae from Messel provide new insight into the morphology and ecology of lizards on the stem of Lacertidae, Europe’s dominant group of living reptiles. http://zoobank.org/urn:lsid:zoobank.org:pub:DFD01563-A913-4286-B64B-E0912474FD08
DOI: 10.6084/m9.figshare.5036153.v1
title: Script to select random sequences from PaVE database

description: 1) download sequences and table from PaVE2) run script3) Manually add PaPV2 sequences to each file
DOI: 10.6084/m9.figshare.5036117
title: txns

description: Details of purchases of 1 million customers<br>
DOI: 10.6084/m9.figshare.5036117.v1
title: txns

description: Details of purchases of 1 million customers<br>
DOI: 10.6084/m9.figshare.5036057
title: Biomarkers in Aortic Stenosis: A Systematic Review

description: Aortic stenosis (AS) is one of the most common heart valve diseases among adults. When symptoms develop alongside severe AS, there is a poor prognosis unless aortic valve replacement (AVR) is performed; however, many patients do not report symptoms even when AS is severe. The optimal timing of AVR for these patients remains uncertain and controversial. AS is a heterogeneous disease with a complex pathophysiology involving structural and biological changes of the valve as well as adaptive and maladaptive compensatory changes in the myocardium and vasculature in response to chronic pressure overload. Several biomarkers reflecting these processes have been identified and have shown to have utility in predicting symptom onset and clinical events before and after AVR. Herein we systematically review biomarkers that have been studied in the setting of AS and summarize their potential use for risk stratification and ultimately to guide the optimal timing of AVR.
DOI: 10.6084/m9.figshare.5036057.v1
title: Biomarkers in Aortic Stenosis: A Systematic Review

description: Aortic stenosis (AS) is one of the most common heart valve diseases among adults. When symptoms develop alongside severe AS, there is a poor prognosis unless aortic valve replacement (AVR) is performed; however, many patients do not report symptoms even when AS is severe. The optimal timing of AVR for these patients remains uncertain and controversial. AS is a heterogeneous disease with a complex pathophysiology involving structural and biological changes of the valve as well as adaptive and maladaptive compensatory changes in the myocardium and vasculature in response to chronic pressure overload. Several biomarkers reflecting these processes have been identified and have shown to have utility in predicting symptom onset and clinical events before and after AVR. Herein we systematically review biomarkers that have been studied in the setting of AS and summarize their potential use for risk stratification and ultimately to guide the optimal timing of AVR.
DOI: 10.6084/m9.figshare.5035997
title: "Cross-platform normalization enables analysis of microarray and RNA-seq data simultaneously" - Fileset

description: This is the full output of the pipeline for "Cross-platform normalization enables analysis of microarray and RNA-seq data simultaneously" -- a project for assessing which normalization methods enable the combination of RNA-seq and microarray data for several applications, including supervised machine learning and differential expression analysis.<br><br>See also our github repository: https://github.com/greenelab/RNAseq_titration_results<br><br>A preprint of this work is available on bioRxiv: https://doi.org/10.1101/118349<br><br>
DOI: 10.6084/m9.figshare.5035991
title: Efficacy of Dipeptide-Coated Magnetic Nanoparticles in Lung Cancer Models Under Pulsed Electromagnetic Field

description: Lung cancer is the leading cause of cancer deaths and the overall 5-year survival rate is less than 17%. Hyperthermia is an alternative approach for the treatment of lung cancer and is associated with fewer side effects. We employed ironoxide nanoparticles in inducing localized hyperthermia in lung cancer cells using a pulsed electromagnetic field (PEMF). We synthesized, characterized and determined the uptake of dipeptide-coated iron oxide nanoparticles. Further, their ability in inducing localized hyperthermia in PEMF on lung cancer cells was assessed. Results showed nanoparticles are non-cytotoxic and showed enhanced cellular uptake in lung cancer cells. <i>In vivo</i> studies in nude mice lung tumor xenografts confirmed the presence in the tumors. Lung cancer cells pretreated with dipeptide-coated magnetic nanoparticles upon PEMF exposure induced cell death.
DOI: 10.6084/m9.figshare.5035934
title: LSHTM - RCUK Article Processing Charge (APC) compliance and financial report 2016-17

description: Spreadsheet containing information on applications for open access Article Processing Charges (APCs) made through the Research Councils UK (RCUK) block grant between 1 April 2016 and 31 March 2017 at the London School of Hygiene and Tropical Medicine. Information collected by the Open Access team in LSHTM’s Library & Archives Service.
DOI: 10.6084/m9.figshare.5035997.v2
title: "Cross-platform normalization enables analysis of microarray and RNA-seq data simultaneously" - Fileset

description: This is the full output of the pipeline for "Cross-platform normalization enables analysis of microarray and RNA-seq data simultaneously" -- a project for assessing which normalization methods enable the combination of RNA-seq and microarray data for several applications, including supervised machine learning and differential expression analysis.<br><br>See also our github repository: https://github.com/greenelab/RNAseq_titration_results<br><br>A preprint of this work is available on bioRxiv: https://doi.org/10.1101/118349<br><br>
DOI: 10.6084/m9.figshare.5035997.v1
title: "Cross-platform normalization enables analysis of microarray and RNA-seq data simultaneously" - Fileset

description: This is the full output of the pipeline for "Cross-platform normalization enables analysis of microarray and RNA-seq data simultaneously" -- a project for assessing which normalization methods enable the combination of RNA-seq and microarray data for several applications, including supervised machine learning and differential expression analysis.<br><br>See also our github repository: https://github.com/greenelab/RNAseq_titration_results<br><br>A preprint of this work is available on bioRxiv: https://doi.org/10.1101/118349<br><br>
DOI: 10.6084/m9.figshare.5035934.v1
title: Compliance and Financial Report 2016-17LSHTM_Gibson.xlsx

description: This Excel spreadsheet records the applications made for open access article processing charges (APCs) through the Research Councils UK (RCUK) block grant at the London School of Hygiene and Tropical Medicine, via the Open Access team in the Library and Archives Service, between 1 April 2016 and 31 March 2017.
DOI: 10.6084/m9.figshare.5035850
title: Dataset of DOI Links on Japanese, English, and Chinese Wikipedias for #WikiCite 2017

description: * I uploaded this for Hack Day, #WikiCite 2017 :)This dataset includes a list of DOIs(Digital Object Identifiers) extracted from Japanese, English, and Chinese Wikipedias as of March 2015. By using this, I wrote my master's thesis and my first full paper of the International conference (ICADL2016, https://doi.org/10.1007/978-3-319-49304-6_40 ).
DOI: 10.6084/m9.figshare.5035934.v3
title: LSHTM - RCUK Article Processing Charge (APC) compliance and financial report 2016-17

description: Spreadsheet containing information on applications for open access Article Processing Charges (APCs) made through the Research Councils UK (RCUK) block grant between 1 April 2016 and 31 March 2017 at the London School of Hygiene and Tropical Medicine. Information collected by the Open Access team in LSHTM’s Library & Archives Service.
DOI: 10.6084/m9.figshare.5035850.v1
title: Dataset of DOI Links on Japanese, English, and Chinese Wikipedias for #WikiCite 2017

description: * I uploaded this for Hack Day, #WikiCite 2017 :)This dataset includes a list of DOIs(Digital Object Identifiers) extracted from Japanese, English, and Chinese Wikipedias as of March 2015. By using this, I wrote my master's thesis and my first full paper of the International conference (ICADL2016, https://doi.org/10.1007/978-3-319-49304-6_40 ).
DOI: 10.6084/m9.figshare.5035934.v2
title: Compliance and Financial Report 2016-17 RCUK

description: This Excel spreadsheet records the applications made for open access article processing charges (APCs) through the Research Councils UK (RCUK) block grant at the London School of Hygiene and Tropical Medicine, via the Open Access team in the Library and Archives Service, between 1 April 2016 and 31 March 2017.
DOI: 10.6084/m9.figshare.5035814
title: Environmental monitoring of a New Caledonian coral reef as part of a study of the carbonate biogenic dissolution process between 2009 and 2016

description: <i><b>See Metadata file</b></i>
DOI: 10.6084/m9.figshare.5035775
title: Datas of Disease Patterns

description: 1.the "dingxiang_datas.xls"contains all the original data which is crawled from DingXiang forum, and also the word segmentation result for each medical record is given.<br>2.the "pmi_new_words.txt" is the result of new medical words found by calculating mutual information.<br>3.the "association_rules" folder contains the association rules mined from the dataset where h-confidence threshold is set 0.3 and support threshold is set 0.0001.<br>4.the "network_communities.csv" describes the complication communities.<br>p.s. if you encounter a "d", it means the word is a disease description vocabulary, and "z" or "s" represents a symptom description vocabulary.
DOI: 10.6084/m9.figshare.5035796
title: Wikidata item quality labels

description: This dataset contains quality labels for 5000 Wikidata items applied by Wikidata editors. The labels correspond to the quality scale described at https://www.wikidata.org/wiki/Wikidata:Item_quality Each line is a JSON blob with the following fields: <br>- item_quality: The labeled quality class (A-E)<br>- rev_id: the revision identifier of the version of the item that was labeled<br>- strata: The size of the item in bytes at the time it was sampled<br>- page_len: The actual size of the item in bytes<br>- page_title: The Qid of the item<br>- claims: A dictionary including P31 "instance-of" values for filtering out certain types of items<br><br>The # of observations by class is: <br>- A class: 322<br>- B class: 438<br>- C class: 1773<br>- D class: 997<br>- E class: 1470<br>
DOI: 10.6084/m9.figshare.5035814.v1
title: Environmental monitoring of a New Caledonian coral reef as part of a study of the carbonate biogenic dissolution process between 2009 and 2016

description: <i><b>See Metadata file</b></i>
DOI: 10.6084/m9.figshare.5035775.v1
title: Datas of Disease Patterns

description: 1.the "dingxiang_datas.xls"contains all the original data which is crawling from DingXiang forum, and also the word segmentation result for each medical record in the dataset.<br>2.the "pmi_new_words.txt" is the result of new medical word found by calculating mutual information, and the "new_medical_dict.txt" is the updated dictionary which we have used for word segmentation.<br>3.the "structure_medical_record.txt" is the structured text after the word segmentation for original data, which contains the symptoms and diseases in each medical record，and the symptom word frequency is showed in "wordfreq.txt".<br>4.the"0.3_disease-disease_rules.txt"、"0.3_symptom-disease_rules.txt"、"0.3_symptom-symptom_rules.txt"are association rules mined from the dataset which h-confidence threshold is set 0.3 and support threshold is set 0.0001.<br>5.the "network_data.txt" contains the data for building the symptom-disease bipartite network.<br>6.the "network_communities.csv" describes the communities in which each disease belongs.<br>p.s. if you encounter a "d", it means the word is a disease description vocabulary, and "z" or "s" represents a symptom description vocabulary.
DOI: 10.6084/m9.figshare.5035760
title: Supplementary Material for: Urinary Osteopontin Predicts Incident Chronic Kidney Disease, while Plasma Osteopontin Predicts Cardiovascular Death in Elderly Men

description: <i>Background and Objectives:</i> The matricellular protein osteopontin is involved in the pathogenesis of both kidney and cardiovascular disease. However, whether circulating and urinary osteopontin levels are associated with the risk of these diseases is less studied. <i>Design, Setting, Participants, and Measurements:</i> A community-based cohort of elderly men (Uppsala Longitudinal Study of Adult Men [ULSAM]; <i>n</i> = 741; mean age: 77 years) was used to study the associations between plasma and urinary osteopontin, incident chronic kidney disease, and the risk of cardiovascular death during a median of 8 years of follow-up. <i>Results:</i> There was no significant cross-sectional correlation between plasma and urinary osteopontin (Spearman ρ = 0.07, <i>p</i> = 0.13). Higher urinary osteopontin, but not plasma osteopontin, was associated with incident chronic kidney disease in multivariable models adjusted for age, cardiovascular risk factors, baseline glomerular filtration rate, urinary albumin/creatinine ratio, and the inflammatory markers interleukin 6 and high-sensitivity C-reactive protein (odds ratio for 1 standard deviation [SD] of urinary osteopontin, 1.42, 95% CI 1.00-2.02, <i>p</i> = 0.048). Conversely, plasma osteopontin, but not urinary osteopontin, was independently associated with cardiovascular death (multivariable hazard ratio per SD increase, 1.35, 95% CI 1.14-1.58, <i>p</i> &lt; 0.001, and 1.00, 95% CI 0.79-1.26, <i>p</i> = 0.99, respectively). The addition of plasma osteopontin to a model with established cardiovascular risk factors significantly increased the C-statistics for the prediction of cardiovascular death (<i>p</i> &lt; 0.002). <i>Conclusions:</i> Higher urinary osteopontin specifically predicts incident chronic kidney disease, while plasma osteopontin specifically predicts cardiovascular death. Our data put forward osteopontin as an important factor in the detrimental interplay between the kidney and the cardiovascular system. The clinical implications, and why plasma and urinary osteopontin mirror different pathologies, remain to be established.
DOI: 10.6084/m9.figshare.5035763
title: Supplementary Material for: Exploring Neural Efficiency in Multiple Sclerosis Patients during the Symbol Digit Modalities Test: A Functional Magnetic Resonance Imaging Study

description: <i>Background:</i> Reduced information-processing speed (IPS) is a primary cognitive deficit of multiple sclerosis (MS) patients. The neural efficiency hypothesis describes an inverse relationship between cognitive performance in a task and the amount of cognitive resources devoted to it. Previous studies have shown that the neural efficiency hypothesis provides an appropriate framework to explore cognitive dysfunction in neurological patients. <i>Objective:</i> The aim of this study was to explore the neural efficiency hypothesis regarding IPS capabilities in cognitively preserved MS patients. <i>Methods:</i> 16 MS patients and 17 healthy controls (HCs) were enrolled and neuropsychologically assessed. All participants also performed a functional magnetic resonance imaging (fMRI)-adapted version of the Symbol Digit Modalities Test (SDMT) at different interstimulus intervals (ISI: 1.5, 2, and 2.5 s). <i>Results:</i> MS patients only displayed lower SDMT performance when the ISI was set at 1.5 s. However, MS patients' normal SDMT performance at larger ISIs was achieved at the cost of increased brain activation, hence revealing that they were less cognitively efficient than the HCs. Regression analyses confirmed this conclusion by showing an opposite relationship between SDMT performance and the amount of neural resources recruited in the HC and MS groups. Thus, while a positive relationship between both variables was observed in MS patients, this correlation was negative for the HC group. <i>Conclusions:</i>MS patients require more cognitive resources than HCs to achieve a normal SDMT performance, then revealing that they are less efficient regarding IPS capabilities.
DOI: 10.6084/m9.figshare.5035760.v1
title: Supplementary Material for: Urinary Osteopontin Predicts Incident Chronic Kidney Disease, while Plasma Osteopontin Predicts Cardiovascular Death in Elderly Men

description: <i>Background and Objectives:</i> The matricellular protein osteopontin is involved in the pathogenesis of both kidney and cardiovascular disease. However, whether circulating and urinary osteopontin levels are associated with the risk of these diseases is less studied. <i>Design, Setting, Participants, and Measurements:</i> A community-based cohort of elderly men (Uppsala Longitudinal Study of Adult Men [ULSAM]; <i>n</i> = 741; mean age: 77 years) was used to study the associations between plasma and urinary osteopontin, incident chronic kidney disease, and the risk of cardiovascular death during a median of 8 years of follow-up. <i>Results:</i> There was no significant cross-sectional correlation between plasma and urinary osteopontin (Spearman ρ = 0.07, <i>p</i> = 0.13). Higher urinary osteopontin, but not plasma osteopontin, was associated with incident chronic kidney disease in multivariable models adjusted for age, cardiovascular risk factors, baseline glomerular filtration rate, urinary albumin/creatinine ratio, and the inflammatory markers interleukin 6 and high-sensitivity C-reactive protein (odds ratio for 1 standard deviation [SD] of urinary osteopontin, 1.42, 95% CI 1.00-2.02, <i>p</i> = 0.048). Conversely, plasma osteopontin, but not urinary osteopontin, was independently associated with cardiovascular death (multivariable hazard ratio per SD increase, 1.35, 95% CI 1.14-1.58, <i>p</i> &lt; 0.001, and 1.00, 95% CI 0.79-1.26, <i>p</i> = 0.99, respectively). The addition of plasma osteopontin to a model with established cardiovascular risk factors significantly increased the C-statistics for the prediction of cardiovascular death (<i>p</i> &lt; 0.002). <i>Conclusions:</i> Higher urinary osteopontin specifically predicts incident chronic kidney disease, while plasma osteopontin specifically predicts cardiovascular death. Our data put forward osteopontin as an important factor in the detrimental interplay between the kidney and the cardiovascular system. The clinical implications, and why plasma and urinary osteopontin mirror different pathologies, remain to be established.
DOI: 10.6084/m9.figshare.5035763.v1
title: Supplementary Material for: Exploring Neural Efficiency in Multiple Sclerosis Patients during the Symbol Digit Modalities Test: A Functional Magnetic Resonance Imaging Study

description: <i>Background:</i> Reduced information-processing speed (IPS) is a primary cognitive deficit of multiple sclerosis (MS) patients. The neural efficiency hypothesis describes an inverse relationship between cognitive performance in a task and the amount of cognitive resources devoted to it. Previous studies have shown that the neural efficiency hypothesis provides an appropriate framework to explore cognitive dysfunction in neurological patients. <i>Objective:</i> The aim of this study was to explore the neural efficiency hypothesis regarding IPS capabilities in cognitively preserved MS patients. <i>Methods:</i> 16 MS patients and 17 healthy controls (HCs) were enrolled and neuropsychologically assessed. All participants also performed a functional magnetic resonance imaging (fMRI)-adapted version of the Symbol Digit Modalities Test (SDMT) at different interstimulus intervals (ISI: 1.5, 2, and 2.5 s). <i>Results:</i> MS patients only displayed lower SDMT performance when the ISI was set at 1.5 s. However, MS patients' normal SDMT performance at larger ISIs was achieved at the cost of increased brain activation, hence revealing that they were less cognitively efficient than the HCs. Regression analyses confirmed this conclusion by showing an opposite relationship between SDMT performance and the amount of neural resources recruited in the HC and MS groups. Thus, while a positive relationship between both variables was observed in MS patients, this correlation was negative for the HC group. <i>Conclusions:</i>MS patients require more cognitive resources than HCs to achieve a normal SDMT performance, then revealing that they are less efficient regarding IPS capabilities.