cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5687551
title: Experimental search for high-temperature ferroelectric perovskites guided by two-step machine learning

description: Experimental data (successful and failed experiments) along with the Curie temperature measurement data.
DOI: 10.6084/m9.figshare.5687548
title: Badges for sharing data and code at Biostatistics - an observational study

description: This fileset contains the anonymised data and code for the study: Badges for sharing data and code at <i>Biostatistics </i>- an observational study. This article is currently under peer-review at F1000Research. It has been accepted as a pre-publication. <br>The data is saved in rdata format and the code was written in Rmarkdown. WinBUGS (version 1.3.4) was also used in the analysis.<br>
DOI: 10.5281/zenodo.3989985
title: Meta-Analysis of the transcriptomic profile of human placenta

description: <strong>Aims:</strong> The establishment of a complex multi-scale model of biological tissue is of great significance for the study of related diseases, and the integration of relevant quantitative data is the premise to achieve this goal. Whereas, the systematic collation of data sets related to placental tissue is relatively lacking. <strong>Methods and Results:</strong> In this study, first-trimester chorionic villus and decidua tissues were collected from 6 healthy women. Transcriptome data was acquired by RNA-seq and the expression levels of trophoblast specific transcription factors were identified by immunofluorescence and RNA-seq data analysis. Differentially expressed genes between chorionic villus and decidua tissues and its related biological functions were identified. Furthermore, 18 published transcriptomes (a total of 425 samples) datasets of human pregnancy-related tissues (including chorionic villus and decidua, term placenta, endometrium, in vitro cell lines, etc.) from public databases were collected and analyzed. We compared the most widely used dimensionality reduction (DR) methods to generate a 2D-map for visualization of these data. We also compared the effects of different parameter settings and commonly used manifold learning methods on the results. <strong>Conclusions: </strong>The result indicates that the nonlinear method can better preserve the small differences between different subtypes of placental tissue than the linear method. It led the foundation for the study on accurate computational modeling of placental tissue development in the future. Although there are public RNA-seq data available for chorionic villus and decidua tissue, this is the first time that the RNA-seq data were obtained from the chorionic villus and decidua which derived from the same patient. The datasets and analysis provide a useful source for the researchers in the field of the maternal-fetal interface and the establishment of pregnancy.
DOI: 10.6084/m9.figshare.5687503
title: Forecasting the spatial transmission of influenza in the United States (data sets)

description: This dataset contains the state level absolute humidity data, state level commute data and state population data that support the study in S. Pei, S. Kandula, W. Yang, J. Shaman, Forecasting the spatial transmission of influenza in the United States, PNAS (2018).
DOI: 10.6084/m9.figshare.5687434
title: Multiple Choice Question Generation Evaluation

description: Evaluation of the Multiple Choice Question generation system<br>
DOI: 10.6084/m9.figshare.5687434.v1
title: Multiple Choice Question Generation Evaluation

description: Evaluation of the Multiple Choice Question generation system<br>
DOI: 10.6084/m9.figshare.5687419
title: Conformers of canonical 5'-deoxycytidylic acid molecule (dCMP) in continuum polarizable dielectric envoronment (IEFPCM water, ε = 78.39)

description: Supplementary materials to the paper<br>"Atomic charges for conformationally rich molecules<br>obtained through a modified principal component regression" by T. Yu. Nikolaienko, L. A. Bulavin
DOI: 10.4225/03/5a2dae0c9b455
title: RNA-Seq of FRCs vs MSCs

description: Comparison between human tonsil FRCs (3 samples) and bone-marrow MSCs (3 samples) from female individuals between the ages of 21-36
DOI: 10.6084/m9.figshare.5687392
title: Reference Norms for Evaluating Maximum Expiratory Flow of Children and Adolescents of the Maule Region in Chile

description: Datas for Evaluating Maximum Expiratory Flow of Children and Adolescents
DOI: 10.6084/m9.figshare.5687392.v1
title: Reference Norms for Evaluating Maximum Expiratory Flow of Children and Adolescents of the Maule Region in Chile

description: Datas for Evaluating Maximum Expiratory Flow of Children and Adolescents
DOI: 10.6084/m9.figshare.5687359
title: Citalopram neuroprotection in MCAo model

description: Present study evaluated the dose-dependent neuroprotective effect of citalopram in a 2 h transient middle cerebral artery occlusion (MCAo) model of focal cerebral ischemia in rats.
DOI: 10.6084/m9.figshare.5687359.v1
title: Citalopram neuroprotection in MCAo model

description: Present study evaluated the dose-dependent neuroprotective effect of citalopram in a 2 h transient middle cerebral artery occlusion (MCAo) model of focal cerebral ischemia in rats.
DOI: 10.6084/m9.figshare.5687356
title: LENS phytoplankton data

description: Phytoplankton data from the Lake Ecosystem Nanosilver Project at IISD-ELA
DOI: 10.6084/m9.figshare.5687356.v1
title: LENS phytoplankton data

description: Phytoplankton data from the Lake Ecosystem Nanosilver Project at IISD-ELA
DOI: 10.6084/m9.figshare.5687284
title: Genetic sequence data generated from human seasonal influenza A(H3N2) viruses sampled in the 2014/15 season in Scotland.

description: Genetic sequence data in fasta format.
DOI: 10.18112/openneuro.ds003104.v1.0.0
title: MNE-somato-data-bids (anonymized)
DOI: 10.17608/k6.auckland.5687131
title: Topo Data for One Tree Hill, Auckland (NZ)

description: topo data from Auckland, courtesy of LINZ, from a LIDAR survey, 50m sampling (from the original 1m spacing). 12 km^2 around One Tree Hill in numpy array.
DOI: 10.6084/m9.figshare.5687101
title: M1 BMI for VTA Opto Stim

description: We performed mouse operant learning brain-machine interface experiments showing that mice learn to reenter more frequently motor cortical activity patterns that trigger optogenetic VTA self-stimulation. The data from the experiments is stored here.
DOI: 10.6084/m9.figshare.5687101.v1
title: M1 BMI for VTA Opto Stim

description: We performed mouse operant learning brain-machine interface experiments showing that mice learn to reenter more frequently motor cortical activity patterns that trigger optogenetic VTA self-stimulation. The data from the experiments is stored here.
DOI: 10.6084/m9.figshare.5687083
title: DATA PLOS.zip

description: Data set of the segmented trajectories exploited in the article DISENTANGLING AND MODELING INTERACTIONS IN FISH WITH BURST-AND-COAST SWIMMING REVEAL DISTINCT ALIGNMENT AND ATTRACTION BEHAVIORS by<br>Daniel S. Calovi, Alexandra Litchinko, Valentin Lecheval, Ugo Lopez, Alfonso Pérez Escudero, Hugues Chaté, Clément Sire, Guy Theraulaz<br><br>
DOI: 10.6084/m9.figshare.5687080
title: Sistema de localización automática

description: Se pretende un dispositivo que administre la comunicación entre un GPS y un teléfono celular; mediante mensajes de texto (SMS), utilizando como elemento de control un microprocesador PIC 16F84A. Enviando un mensaje SMS, un usuario remoto puede consultar la ubicación geográfica del dispositivo, obteniendo la latitud, longitud, y otros parámetros, a la vuelta del mensaje enviado por el teléfono celular conectado al PIC. Para la programación se utilizó el ambiente de desarrollo integrado MPLAB de Microchip Technology Incorporate (tm), mediante la herramienta MPASM (Assembler). El dispositivo fue simulado en PROTEUS VSM (tm) de Labcenter Electronics.
DOI: 10.6084/m9.figshare.5687080.v2
title: Sistema de localización automática

description: Se pretende un dispositivo que administre la comunicación entre un GPS y un teléfono celular; mediante mensajes de texto (SMS), utilizando como elemento de control un microprocesador PIC 16F84A. Enviando un mensaje SMS, un usuario remoto puede consultar la ubicación geográfica del dispositivo, obteniendo la latitud, longitud, y otros parámetros, a la vuelta del mensaje enviado por el teléfono celular conectado al PIC. Para la programación se utilizó el ambiente de desarrollo integrado MPLAB de Microchip Technology Incorporate (tm), mediante la herramienta MPASM (Assembler). El dispositivo fue simulado en PROTEUS VSM (tm) de Labcenter Electronics.
DOI: 10.6084/m9.figshare.5686990
title: ADK Long-term Dataset - Harmonized

description: Long-term dataset of lake biology and chemistry from 28 lakes in the Adirondack Park, northern New York State. Includes standard limnological parameters (secchi, temp, dissolved oxygen), baseline chemistry (pH, phosphorous, nitrogen, sulfate, nitrate, acid neutralizing capacity, among others), biological organism observations (phytoplankton, zooplankton). Originally collected to examine the long-term recovery of lakes and their biota from acidification.<br><br>Includes both harmonized data and metadata (column description) files for distribution. <br>
DOI: 10.6084/m9.figshare.5686990.v3
title: ADK Long-term Dataset - Harmonized

description: Long-term dataset of lake biology and chemistry from 28 lakes in the Adirondack Park, northern New York State. Includes standard limnological parameters (secchi, temp, dissolved oxygen), baseline chemistry (pH, phosphorous, nitrogen, sulfate, nitrate, acid neutralizing capacity, among others), biological organism observations (phytoplankton, zooplankton). Originally collected to examine the long-term recovery of lakes and their biota from acidification.<br><br>Includes both harmonized data and metadata (column description) files for distribution. <br>
DOI: 10.6084/m9.figshare.5686987
title: ADK Long-term data and code compilation

description: Long-term dataset of lake biology and chemistry from 28 lakes in the Adirondack Park, northern New York State. Includes standard limnological parameters (secchi, temp, dissolved oxygen), baseline chemistry (pH, phosphorous, nitrogen, sulfate, nitrate, acid neutralizing capacity, among others), biological organism observations (phytoplankton, zooplankton). Originally collected to examine the long-term recovery of lakes and their biota from acidification.<br><br>Includes raw data, processed data, and custom R code for dataset cleaning and harmonization. <br>
DOI: 10.6084/m9.figshare.5686975
title: Raw nerve plexus images

description: Raw subbasal nerve plexus images obtained by laser-scanning in vivo confocal microscopy of the cornea in healthy subjects and type 2 diabetes mellitus subjects of the same age. The data represent 2D depiction of the subbasal nerve plexus at a single depth plane. Images are arranged by patient number and by Eye (OS - left, OD - right).
DOI: 10.6084/m9.figshare.5686924
title: Dataset for: Release from informational masking by auditory stream segregation: Perception and its neural correlate

description: In the analysis of acoustic scenes we easily miss sounds or are insensitive to sound features that are salient if presented in isolation. This insensitivity that is not due to interference in the inner ear is termed informational masking (IM). So far, the cellular mechanisms underlying IM remained elusive. Here, we apply a sequential IM paradigm to humans and gerbils using a sound-level-increment-detection task determining the sensitivity to target tones in a background of standard (same frequency) and distracting tones (varying in level and frequency). The amount of IM that was indicated by the level-increment thresholds depended on the frequency separation between the distracting and the standard and target tones. In humans and gerbils we observed similar perceptual thresholds. A release from IM of more than 20 dB was observed in both species if the distracting tones were well segregated in frequency from the other tones. Neuronal rate responses elicited by similar sequences in gerbil inferior colliculus and auditory cortex were recorded. At both levels of the auditory pathway the neuronal thresholds obtained with a signal-detection theoretic approach deducing the sensitivity from the analysis of the neurons’ receiver operating characteristics matched the psychophysical thresholds revealing that IM already emerges at midbrain level. By applying objective response measures in physiology and psychophysics we demonstrated that the population of neurons has a sufficient sensitivity for explaining the perceptual level-increment thresholds indicating IM. There was a good correspondence between the neuronal and perceptual release from IM being related to auditory stream segregation.
DOI: 10.6084/m9.figshare.5686924.v1
title: Dataset for: Release from informational masking by auditory stream segregation: Perception and its neural correlate

description: In the analysis of acoustic scenes we easily miss sounds or are insensitive to sound features that are salient if presented in isolation. This insensitivity that is not due to interference in the inner ear is termed informational masking (IM). So far, the cellular mechanisms underlying IM remained elusive. Here, we apply a sequential IM paradigm to humans and gerbils using a sound-level-increment-detection task determining the sensitivity to target tones in a background of standard (same frequency) and distracting tones (varying in level and frequency). The amount of IM that was indicated by the level-increment thresholds depended on the frequency separation between the distracting and the standard and target tones. In humans and gerbils we observed similar perceptual thresholds. A release from IM of more than 20 dB was observed in both species if the distracting tones were well segregated in frequency from the other tones. Neuronal rate responses elicited by similar sequences in gerbil inferior colliculus and auditory cortex were recorded. At both levels of the auditory pathway the neuronal thresholds obtained with a signal-detection theoretic approach deducing the sensitivity from the analysis of the neurons’ receiver operating characteristics matched the psychophysical thresholds revealing that IM already emerges at midbrain level. By applying objective response measures in physiology and psychophysics we demonstrated that the population of neurons has a sufficient sensitivity for explaining the perceptual level-increment thresholds indicating IM. There was a good correspondence between the neuronal and perceptual release from IM being related to auditory stream segregation.
DOI: 10.6084/m9.figshare.5686912
title: Additional file 2: of GoldenPiCS: a Golden Gate-derived modular cloning system for applied synthetic biology in the yeast Pichia pastoris

description: GoldenPiCS modules and plasmids. Modules and plasmids are listed with corresponding cloning- and fusion sites and full sequences. DNA orientation is 5’to 3′. All plasmids are available at Addgene. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.5686897
title: Additional file 4: Table S2. of Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes

description: Joint test of association with local ancestry and genotype. (XLSX 389 kb)
DOI: 10.6084/m9.figshare.5686897.v1
title: Additional file 4: Table S2. of Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes

description: Joint test of association with local ancestry and genotype. (XLSX 389 kb)
DOI: 10.6084/m9.figshare.5686879
title: Additional file 3: Table S1. of Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes

description: List of SNPs with meta-analysis p-value less than 10â 4. (XLSX 190 kb)
DOI: 10.6084/m9.figshare.5686879.v1
title: Additional file 3: Table S1. of Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes

description: List of SNPs with meta-analysis p-value less than 10â 4. (XLSX 190 kb)
DOI: 10.6084/m9.figshare.5686867
title: Additional file 2: of Diverse effects of distance cutoff and residue interval on the performance of distance-dependent atom-pair potential in protein structure prediction

description: The list of the 1762 non-redundant PDB chains and the detailed information for the filtered CASP11 and CASP12 decoys. (XLSX 339Â kb)
DOI: 10.6084/m9.figshare.5686867.v1
title: Additional file 2: of Diverse effects of distance cutoff and residue interval on the performance of distance-dependent atom-pair potential in protein structure prediction

description: The list of the 1762 non-redundant PDB chains and the detailed information for the filtered CASP11 and CASP12 decoys. (XLSX 339Â kb)
DOI: 10.6084/m9.figshare.5686858
title: Additional file 2: Table S3. of Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes

description: Replication of AA-DHS admixture mapping results in JHS. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5686858.v1
title: Additional file 2: Table S3. of Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes

description: Replication of AA-DHS admixture mapping results in JHS. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5686837
title: Additional file 1: Table S4. of Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes

description: Meta-analysis of 130 HU CAC scores in AA-DHS and JHS. (XLSX 230 kb)
DOI: 10.6084/m9.figshare.5686837.v1
title: Additional file 1: Table S4. of Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes

description: Meta-analysis of 130 HU CAC scores in AA-DHS and JHS. (XLSX 230 kb)
DOI: 10.6084/m9.figshare.5686819
title: MOESM6 of A screening system to identify transcription factors that induce binding site-directed DNA demethylation

description: Additional file 6. Primer list for bisulfite-PCR sequencing.
DOI: 10.6084/m9.figshare.5686819.v1
title: MOESM6 of A screening system to identify transcription factors that induce binding site-directed DNA demethylation

description: Additional file 6. Primer list for bisulfite-PCR sequencing.
DOI: 10.6084/m9.figshare.5686816
title: Additional file 1: of Peer feedback for examiner quality assurance on MRCGP International South Asia: a mixed methods study

description: Peer feedback for examiner quality assurance on MRCGP[INT] South Asia - Questionnaire for examiners. (XLS 56Â kb)
DOI: 10.6084/m9.figshare.5686804
title: MOESM5 of A screening system to identify transcription factors that induce binding site-directed DNA demethylation

description: Additional file 5. Primer list for ChIP-qPCR.
DOI: 10.6084/m9.figshare.5686804.v1
title: MOESM5 of A screening system to identify transcription factors that induce binding site-directed DNA demethylation

description: Additional file 5. Primer list for ChIP-qPCR.
DOI: 10.6084/m9.figshare.5686783
title: MOESM4 of A screening system to identify transcription factors that induce binding site-directed DNA demethylation

description: Additional file 4. Primer list for qRT-PCR.
DOI: 10.6084/m9.figshare.5686783.v1
title: MOESM4 of A screening system to identify transcription factors that induce binding site-directed DNA demethylation

description: Additional file 4. Primer list for qRT-PCR.
DOI: 10.6084/m9.figshare.5686741
title: MOESM2 of A screening system to identify transcription factors that induce binding site-directed DNA demethylation

description: Additional file 2. Full list of gene ontology and specifically expressing tissue enrichment analysis. p values were computed by Fisherâ s exact test.
DOI: 10.6084/m9.figshare.5686741.v1
title: MOESM2 of A screening system to identify transcription factors that induce binding site-directed DNA demethylation

description: Additional file 2. Full list of gene ontology and specifically expressing tissue enrichment analysis. p values were computed by Fisherâ s exact test.
DOI: 10.6084/m9.figshare.5686723
title: Additional file 1: Table S1. of The first detected airline introductions of yellow fever mosquitoes (Aedes aegypti) to Europe, at Schiphol International airport, the Netherlands

description: Genotypes of the five Aedes aegypti specimens captured at Schiphol, the Netherlands (2016) at 12 microsatellite loci. Loci AC1, AC2, AC4, AC5, CT2, AG1, AG2, and AG5 are dinucleotide repeats; loci A1, A9, B2, B3 are trinucleotide repeats as described in Gloria-Soria et al. [12]. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.5686723.v1
title: Additional file 1: Table S1. of The first detected airline introductions of yellow fever mosquitoes (Aedes aegypti) to Europe, at Schiphol International airport, the Netherlands

description: Genotypes of the five Aedes aegypti specimens captured at Schiphol, the Netherlands (2016) at 12 microsatellite loci. Loci AC1, AC2, AC4, AC5, CT2, AG1, AG2, and AG5 are dinucleotide repeats; loci A1, A9, B2, B3 are trinucleotide repeats as described in Gloria-Soria et al. [12]. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.5686648
title: Segert, Davis-Stober (2017). Supplementary Material.

description: Full table of Bayes Factors against null model for all subjects, conditions, and models, as well as Matlab code for generating the table. To run the code,simply execute the script Run.m. Simulation parameters (e.g., number of iterations) are defined at the beginning of this file, and can be adjusted by hand. Requires Parallel Computing Toolbox.<br>
DOI: 10.6084/m9.figshare.5686648.v1
title: Segert, Davis-Stober (2017). Supplementary Material.

description: Full table of Bayes Factors against null model for all subjects, conditions, and models, as well as Matlab code for generating the table. To run the code,simply execute the script Run.m. Simulation parameters (e.g., number of iterations) are defined at the beginning of this file, and can be adjusted by hand. Requires Parallel Computing Toolbox.<br>
DOI: 10.6084/m9.figshare.5686639
title: panfilova.rar

description: The data for the paper "Oil slick observation at low incidence angles in Ku-band " by M. A. Panfilova , V. Yu. Karaev , and Jie Guo.
DOI: 10.6084/m9.figshare.5686639.v1
title: panfilova.rar

description: The data for the paper "Oil slick observation at low incidence angles in Ku-band " by M. A. Panfilova , V. Yu. Karaev , and Jie Guo.
DOI: 10.6084/m9.figshare.5686633
title: calcin_data

description: Scorpions have evolved venoms with diverse variety of toxins with a plethora of biological targets, but characterizing the evolution of this molecular diversity has been limited by the lack of a comprehensive phylogenetic hypothesis of scorpion relationships. Here, we elucidate the origin of calcins and lambda potassium channel toxins (LKTx), a type of inhibitor cystine knot (ICK) toxins. In this study, we compiled the most comprehensive sampling of ICK peptide homologs across the breath of scorpion diversity. Using a de novo phylogenomic tree, and morphometric analysis of 3D molecular models of these peptides, we traced the evolutionary change in the shape of these peptides. The discovery of phylogenetic signal in 3D molecular models of calcins and LKTx, provides the first synapomorphies for the two extant scorpion parvorders, which are otherwise morphologically diverse and undefined. Our morphometric analyses further reveal that calcins and LKTx evolved different shapes with minimal overlap in morphospace, supporting their characterization as stable (non-convergent) synapomorphies.