cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3713183
title: Pairwise Multi-Class Document Classification for Semantic Relations between Wikipedia Articles (Dataset, Models & Code)

description: Many digital libraries recommend literature to their users considering the similarity between a query document and their repository. However, they often fail to distinguish what is the relationship that makes two documents alike. In this paper, we model the problem of finding the relationship between two documents as a pairwise document classification task. To find the semantic relation between documents, we apply a series of techniques, such as GloVe, Paragraph-Vectors, BERT, and XLNet under different configurations (e.g., sequence length, vector concatenation scheme), including a Siamese architecture for the Transformer-based systems. We perform our experiments on a newly proposed dataset of 32,168 Wikipedia article pairs and Wikidata properties that define the semantic document relations. Our results show vanilla BERT as the best performing system with an F1-score of 0.93,<br> which we manually examine to better understand its applicability to other domains. Our findings suggest that classifying semantic relations between documents is a solvable task and motivates the development of recommender systems based on the evaluated techniques. The discussions in this paper serve as first steps in the exploration of documents through SPARQL-like queries such that one could find documents that are similar in one aspect but dissimilar in another. Additional information can be found on GitHub. The following data is supplemental to the experiments described in our research paper. The data consists of: Datasets (articles, class labels, cross-validation splits) Pretrained models (Transformers, GloVe, Doc2vec) Model output (prediction) for the best performing models <strong>Dataset</strong> The Wikipedia article corpus is available in <code>enwiki-20191101-pages-articles.weighted.10k.jsonl.bz2</code>. The original data have been downloaded as XML dump, and the corresponding articles were extracted as plain-text with gensim.scripts.segment_wiki. The archive contains only articles that are available in training or test data. The actual dataset is provided as used in the stratified k-fold with <code>k=4</code> in <code>train_testdata__4folds.tar.gz</code>. <pre><code>├── 1 │ ├── test.csv │ └── train.csv ├── 2 │ ├── test.csv │ └── train.csv ├── 3 │ ├── test.csv │ └── train.csv └── 4 ├── test.csv └── train.csv 4 directories, 8 files </code></pre> Pretrained models PyTorch: vanilla and Siamese BERT + XLNet Pretrained model for each fold is available in the corresponding model archives: <pre><code># Vanilla model_wiki.bert_base__joint__seq512.tar.gz model_wiki.xlnet_base__joint__seq512.tar.gz # Siamese model_wiki.bert_base__siamese__seq512__4d.tar.gz model_wiki.xlnet_base__siamese__seq512__4d.tar.gz </code></pre>
DOI: 10.5281/zenodo.3713182
title: Pairwise Multi-Class Document Classification for Semantic Relations between Wikipedia Articles (Dataset, Models & Code)

description: Many digital libraries recommend literature to their users considering the similarity between a query document and their repository. However, they often fail to distinguish what is the relationship that makes two documents alike. In this paper, we model the problem of finding the relationship between two documents as a pairwise document classification task. To find the semantic relation between documents, we apply a series of techniques, such as GloVe, Paragraph-Vectors, BERT, and XLNet under different configurations (e.g., sequence length, vector concatenation scheme), including a Siamese architecture for the Transformer-based systems. We perform our experiments on a newly proposed dataset of 32,168 Wikipedia article pairs and Wikidata properties that define the semantic document relations. Our results show vanilla BERT as the best performing system with an F1-score of 0.93,<br> which we manually examine to better understand its applicability to other domains. Our findings suggest that classifying semantic relations between documents is a solvable task and motivates the development of recommender systems based on the evaluated techniques. The discussions in this paper serve as first steps in the exploration of documents through SPARQL-like queries such that one could find documents that are similar in one aspect but dissimilar in another. Additional information can be found on GitHub. The following data is supplemental to the experiments described in our research paper. The data consists of: Datasets (articles, class labels, cross-validation splits) Pretrained models (Transformers, GloVe, Doc2vec) Model output (prediction) for the best performing models <strong>Dataset</strong> The Wikipedia article corpus is available in <code>enwiki-20191101-pages-articles.weighted.10k.jsonl.bz2</code>. The original data have been downloaded as XML dump, and the corresponding articles were extracted as plain-text with gensim.scripts.segment_wiki. The archive contains only articles that are available in training or test data. The actual dataset is provided as used in the stratified k-fold with <code>k=4</code> in <code>train_testdata__4folds.tar.gz</code>. <pre><code>├── 1 │ ├── test.csv │ └── train.csv ├── 2 │ ├── test.csv │ └── train.csv ├── 3 │ ├── test.csv │ └── train.csv └── 4 ├── test.csv └── train.csv 4 directories, 8 files </code></pre> Pretrained models PyTorch: vanilla and Siamese BERT + XLNet Pretrained model for each fold is available in the corresponding model archives: <pre><code># Vanilla model_wiki.bert_base__joint__seq512.tar.gz model_wiki.xlnet_base__joint__seq512.tar.gz # Siamese model_wiki.bert_base__siamese__seq512__4d.tar.gz model_wiki.xlnet_base__siamese__seq512__4d.tar.gz </code></pre>
DOI: 10.5286/isis.e.rb1920009-4
title: Structures of phenol-ammonia and phenol-water compounds

description: Phenol-water and phenol-ammonia clusters are useful model systems for understanding the types of proton-transfer interactions that occur during photosynthesis in plants and bacteria. However, almost nothing is known about these complexes in the solid state. Since these appear to be excellent candidates to undergo solid-state proton transfer under slight degrees of compression, structure determinations at low temperature and later under hydrostatic pressure are required. The aim of this work is to carry out low-temperature structural characterisation of the known phases, phenol hemihydrate, phenol mono-ammoniate and phenol di-ammoniate. Furthermore, I propose to evaluate the possible existence of an ammonia-rich phase with a phenol to ammonia ratio of about 9:1.
DOI: 10.15468/6cxxpc
title: Revision of the spider genus Nyetnops Platnick & Lise (Araneae: Caponiidae) with proposition of the new genus Nopsma, from Central and South America

description: This dataset contains the digitized treatments in Plazi based on the original journal article Sánchez-Ruiz, Alexander, Brescovit, Antonio D., Bonaldo, Alexandre B. (2020): Revision of the spider genus Nyetnops Platnick & Lise (Araneae: Caponiidae) with proposition of the new genus Nopsma, from Central and South America. Zootaxa 4751 (3): 461-486, DOI: https://doi.org/10.11646/zootaxa.4751.3.3
DOI: 10.18716/nmrshiftdb2/76430
title: NMR data for 2,3-dihydro-1H-pyrrolo[1,2-a]indole-4-carbaldehyde
DOI: 10.18716/nmrshiftdb2/76423
title: NMR data for cyclopent-3-ene-1-carbonitrile
DOI: 10.18716/nmrshiftdb2/76427
title: NMR data for InChI=1S/C6H11N/c1-5-3-6(2)7-4-5/h5H,3-4H2,1-2H3
DOI: 10.15468/ojview
title: Black fungus gnats (Diptera: Sciaridae) of Queensland, Australia. Part II. Genus Pseudolycoriella Menzel & Mohrig, 1998

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mohrig, Werner, Kauschke, Ellen, Broadley, Adam (2020): Black fungus gnats (Diptera: Sciaridae) of Queensland, Australia. Part II. Genus Pseudolycoriella Menzel & Mohrig, 1998. Zootaxa 4751 (3): 487-506, DOI: https://doi.org/10.11646/zootaxa.4751.3.4
DOI: 10.18716/nmrshiftdb2/76167
title: NMR data for InChI=1S/C12H13N3O2S/c1-3-17-11(16)10-14-18-12(13-2)15(10)9-7-5-4-6-8-9/h4-8H,3H2,1-2H3/b13-12-
DOI: 10.15468/h2ici5
title: Taxonomic review of the Hyphessobrycon panamensis species-group (Characiformes: Characidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ota, Renata R., Carvalho, Fernando R., Pavanelli, Carla S. (2020): Taxonomic review of the Hyphessobrycon panamensis species-group (Characiformes: Characidae). Zootaxa 4751 (3): 401-436, DOI: https://doi.org/10.11646/zootaxa.4751.3.1
DOI: 10.15468/zda6hv
title: Comparative mitochondrial genomics of Shoveliteratura triangula (Orthoptera Tettigoniidae, Meconematinae) and the first description of a female specimen

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mao, Shaoli, Yuan, Hao, Chang, Huihui, Shi, Fuming, Zhou, Yafu (2020): Comparative mitochondrial genomics of Shoveliteratura triangula (Orthoptera Tettigoniidae, Meconematinae) and the first description of a female specimen. Zootaxa 4751 (3): 507-520, DOI: https://doi.org/10.11646/zootaxa.4751.3.5
DOI: 10.18716/nmrshiftdb2/76428
title: NMR data for 6-ethyl-5-methylpyridine-3-carbonitrile
DOI: 10.15468/fqvuls
title: Contributions to knowledge of Arthrobrachus Solier, 1849 (Coleoptera: Melyridae) A redescription of Arthrobrachus forsteri Wittmer, 1958 and A. longipilis Pic, 1919

description: This dataset contains the digitized treatments in Plazi based on the original journal article Estrada, Patricia (2020): Contributions to knowledge of Arthrobrachus Solier, 1849 (Coleoptera: Melyridae) A redescription of Arthrobrachus forsteri Wittmer, 1958 and A. longipilis Pic, 1919. Zootaxa 4751 (3): 582-588, DOI: https://doi.org/10.11646/zootaxa.4751.3.10
DOI: 10.18716/nmrshiftdb2/76173
title: NMR data for 3-methyl-1,3,4-oxadiazol-2-one
DOI: 10.15468/wfk7vl
title: A new species of the genus Verilus (Teleostei, Percomorpha, Acropomatidae) from Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Schwarzhans, Werner W., Mincarone, Michael M., Villarins, Bárbara T. (2020): A new species of the genus Verilus (Teleostei, Percomorpha, Acropomatidae) from Brazil. Zootaxa 4751 (3): 589-596, DOI: https://doi.org/10.11646/zootaxa.4751.3.11
DOI: 10.18716/nmrshiftdb2/76171
title: NMR data for 5-methyl-3H-1,3,4-oxadiazol-2-one
DOI: 10.15468/ksyndg
title: Revision of the Garra species of the Hajar Mountains in Oman and the United Arab Emirates with the description of two new species (Teleostei: Cyprinidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kirchner, Sandra, Kruckenhauser, Luise, Pichler, Arthur, Borkenhagen, Kai, Freyhof, Jörg (2020): Revision of the Garra species of the Hajar Mountains in Oman and the United Arab Emirates with the description of two new species (Teleostei: Cyprinidae). Zootaxa 4751 (3): 521-545, DOI: https://doi.org/10.11646/zootaxa.4751.3.6
DOI: 10.15468/xxs3hl
title: A new potentially endangered limestone-associated Bent-toed Gecko of the Cyrtodactylus pulchellus (Squamata: Gekkonidae) complex from northern Peninsular Malaysia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wood Jr, Perry L., Grismer, L. Lee, Muin, Mohd Abdul, Anuar, Shahrul, Oaks, Jamie R., Sites Jr, Jack W. (2020): A new potentially endangered limestone-associated Bent-toed Gecko of the Cyrtodactylus pulchellus (Squamata: Gekkonidae) complex from northern Peninsular Malaysia. Zootaxa 4751 (3): 437-460, DOI: https://doi.org/10.11646/zootaxa.4751.3.2
DOI: 10.15468/4jnrhs
title: Re-description and range extension of the Afrotropical mayfly Cloeon perkinsi (Ephemeroptera, Baetidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Yanai, Zohar, Graf, Wolfram, Terefe, Yonas, Sartori, Michel, Gattolliat, Jean-Luc (2020): Re-description and range extension of the Afrotropical mayfly Cloeon perkinsi (Ephemeroptera, Baetidae). European Journal of Taxonomy 617: 1-23, DOI: https://doi.org/10.5852/ejt.2020.617
DOI: 10.18716/nmrshiftdb2/76429
title: NMR data for 5-[(E)-but-1-en-3-ynyl]-3,3-dimethyl-2,4-dihydropyrrole
DOI: 10.15468/xax43z
title: Taxonomy of widespread Neotropical species of Podisus Herrich-Schäffer (Hemiptera: Pentatomidae: Asopinae): redescription of P. distinctus (Stål, 1860) and revalidation of P. fuscescens (Dallas, 1851)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Brugnera, Ricardo, Roell, Talita, Campos, Luiz Alexandre, Grazia, Jocelia (2020): Taxonomy of widespread Neotropical species of Podisus Herrich-Schäffer (Hemiptera: Pentatomidae: Asopinae): redescription of P. distinctus (Stål, 1860) and revalidation of P. fuscescens (Dallas, 1851). Zootaxa 4751 (3): 546-562, DOI: https://doi.org/10.11646/zootaxa.4751.3.7
DOI: 10.18716/nmrshiftdb2/76426
title: NMR data for InChI=1S/C7H12N2/c1-9-5-3-2-4-7(9)6-8/h7H,2-5H2,1H3
DOI: 10.5281/zenodo.3714586
title: Supporting data for "Formation of slab window during slab rollback: Evidence from Early Paleozoic gabbros in Tajik South Tianshan, southwestern Central Asian Orogenic Belt"

description: This is the supporting materials for the manuscript "Formation of slab window during slab rollback: Evidence from Early Paleozoic gabbros in Tajik South Tianshan, southwestern Central Asian Orogenic Belt" by Yang et al.
DOI: 10.15468/xppuif
title: Parapsilorhynchus alluriensis, a new species of cyprinid fish (Teleostei: Cyprinidae) from the Eastern Ghats, of India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Jadhav, S. S., Karuthapandi, M., Chandra, Kailash, Jaiswal, Deepa, Dinesh, K. P., Narahari, A. (2020): Parapsilorhynchus alluriensis, a new species of cyprinid fish (Teleostei: Cyprinidae) from the Eastern Ghats, of India. Zootaxa 4751 (3): 563-574, DOI: https://doi.org/10.11646/zootaxa.4751.3.8
DOI: 10.5281/zenodo.3714585
title: Supporting data for "Formation of slab window during slab rollback: Evidence from Early Paleozoic gabbros in Tajik South Tianshan, southwestern Central Asian Orogenic Belt"

description: This is the supporting materials for the manuscript "Formation of slab window during slab rollback: Evidence from Early Paleozoic gabbros in Tajik South Tianshan, southwestern Central Asian Orogenic Belt" by Yang et al.
DOI: 10.18716/nmrshiftdb2/76170
title: NMR data for InChI=1S/C11H11N3S/c1-12-11-14-7-6-8-4-2-3-5-9(8)10(14)13-15-11/h2-5H,6-7H2,1H3/b12-11-
DOI: 10.15468/lyycol
title: Labrumoides vibrissa (Arthropoda: Pycnogonida), new callipallenid genus and new species from north Western Australia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Staples, David A. (2020): Labrumoides vibrissa (Arthropoda: Pycnogonida), new callipallenid genus and new species from north Western Australia. Zootaxa 4751 (3): 575-581, DOI: https://doi.org/10.11646/zootaxa.4751.3.9
DOI: 10.17632/mtst962jfr.1
title: Implication of TERF2 in post mitotic cells

description: This corpus represent all data generated to evaluate the implication of TERF2 modulation in post-mitotic tissues and cells. Data involved a cellular model, animal strains and human biopsies used for confirmation of our hypothesis.
DOI: 10.5281/zenodo.3714842
title: Dataset for Metabolic Cost Calculations of Gait using Musculoskeletal Energy Models, a Comparison Study

description: This data set contains raw and processed data of gait analysis experiments of level and inclined walking at two speeds for 12 participants. The slopes were uphill and downhill with 8% incline. The raw data contains the output of the force plates and marker data, as well as raw measurements from an K4B2 system. Mat files are processed data: measured metabolic rate, and measured and calculated metabolic cost, as well as kinetic and kinematic data of an averaged gait cycle: joint angles, velocities and moments, ground reaction forces, muscle activation, contractile element length and stimulation, and the duration of the gait cycle.
DOI: 10.5281/zenodo.3714846
title: Companion Web Page for "Empirical Evidence of Large-Scale Diversity in API Usage of Object-Oriented Software"

description: dataset-jars-scam2013.zip: Content: 3 418 Jar files, which include 382 774 different types (classes or interfaces). Source: All Jar files present on a machine used for performing software mining experiments for 7 years. type-usages-20130622.zip: Content: All the type-usages, filtered by type of the type-usage Software: Software to extract type-usages: https://github.com/monperrus/typeusage Paper: <pre>@inproceedings{Mendez2013, title = {Empirical Evidence of Large-Scale Diversity in API Usage of Object-Oriented Software}, author = {Mendez, Diego and Baudry, Benoit and Monperrus, Martin}, url = {https://hal.archives-ouvertes.fr/hal-00844753/file/article.pdf}, booktitle = {{International Conference on Source Code Analysis and Manipulation (SCAM'2013)}}, pages = {10}, year = {2013}, doi = {10.1109/SCAM.2013.6648183}, } </pre>
DOI: 10.5281/zenodo.3714845
title: Companion Web Page for "Empirical Evidence of Large-Scale Diversity in API Usage of Object-Oriented Software"

description: dataset-jars-scam2013.zip: Content: 3 418 Jar files, which include 382 774 different types (classes or interfaces). Source: All Jar files present on a machine used for performing software mining experiments for 7 years. type-usages-20130622.zip: Content: All the type-usages, filtered by type of the type-usage Software: Software to extract type-usages: https://github.com/monperrus/typeusage Paper: <pre>@inproceedings{Mendez2013, title = {Empirical Evidence of Large-Scale Diversity in API Usage of Object-Oriented Software}, author = {Mendez, Diego and Baudry, Benoit and Monperrus, Martin}, url = {https://hal.archives-ouvertes.fr/hal-00844753/file/article.pdf}, booktitle = {{International Conference on Source Code Analysis and Manipulation (SCAM'2013)}}, pages = {10}, year = {2013}, doi = {10.1109/SCAM.2013.6648183}, } </pre>
DOI: 10.25345/c5dt3n
title: MassIVE MSV000085114 - GNPS Camille_3 phases (orga, inter, aqueuse)
title: For the identification of metabolites in 3 compartments (aqueous, middle, organic) produce by marine bacteria (TC14) in planktonic mode
DOI: 10.5286/isis.e.rb1610468-8
title: Structural evolution and negative thermal expansion of Sr2IrO4

description: Sr2IrO4 is an important material in condensed matter physics, displaying a novel Jeff=½ Mott insulating state and being a rare comparative system for understanding the high temperature cuprate superconductors. We have already discovered a high temperature phase transition in this material along with negative thermal expansion over a wide temperature range. We plan further detailed studies across the entire thermal phase diagram to elucidate the details of the octahedral distortions which are critical to the electronic structure and magnetism in this material. In addition our study will provide rare details of negative thermal expansion in a Ruddlesden-Popper perovskite.
DOI: 10.18716/nmrshiftdb2/76174
title: NMR data for 3,5-dimethyl-1,3,4-oxadiazol-2-one
DOI: 10.18716/nmrshiftdb2/76166
title: NMR data for InChI=1S/C6H6N4O2S/c1-3-8-5(13-10-3)4(9-7)6(11)12-2/h1-2H3
DOI: 10.18716/nmrshiftdb2/76175
title: NMR data for 5-methyl-3H-1,3,4-thiadiazole-2-thione
DOI: 10.18716/nmrshiftdb2/76182
title: NMR data for 1,4-dibromo-2-methyl-5-propan-2-ylbenzene
DOI: 10.5281/zenodo.3714889
title: The VMC Survey - XXXVII. Pulsation periods of dust enshrouded AGB stars in the Magellanic Clouds

description: FigA1.tar and FigC2.tar contain postscript files of the 1299 light curves and 254 spectral energy distributions, respectively, as described in the paper.
DOI: 10.5281/zenodo.3714888
title: The VMC Survey - XXXVII. Pulsation periods of dust enshrouded AGB stars in the Magellanic Clouds

description: FigA1.tar and FigC2.tar contain postscript files of the 1299 light curves and 254 spectral energy distributions, respectively, as described in the paper.
DOI: 10.18716/nmrshiftdb2/76169
title: NMR data for InChI=1S/C6H9N3S/c1-7-6-9-4-2-3-5(9)8-10-6/h2-4H2,1H3/b7-6-
DOI: 10.18716/nmrshiftdb2/76176
title: NMR data for 1,2-dibromo-4,5-dimethylbenzene
DOI: 10.5281/zenodo.3714875
title: VLBNs - Very Large Boolean Networks

description: This archive contains instances of Boolean networks (in BoolNet format) generated from scale-free random network structure, on which has been applied the inhibitor-dominant rule to devise the logical functions. The generated networks range from 1,000 to 100,000 nodes, with in-degrees ranging up to 1400. Contents: Analysis.ipynb: in/out-degree scatter plots of the generated networks Generation.ipynb: notebook used to generate the networks (requirs colomoto_jupyter python module) random-{N}-{id}.bnet: generated Boolean networks with N components
DOI: 10.5281/zenodo.3714876
title: VLBNs - Very Large Boolean Networks

description: This archive contains instances of Boolean networks (in BoolNet format) generated from scale-free random network structure, on which has been applied the inhibitor-dominant rule to devise the logical functions. The generated networks range from 1,000 to 100,000 nodes, with in-degrees ranging up to 1400. Contents: Analysis.ipynb: in/out-degree scatter plots of the generated networks Generation.ipynb: notebook used to generate the networks (requirs colomoto_jupyter python module) random-{N}-{id}.bnet: generated Boolean networks with N components
DOI: 10.18716/nmrshiftdb2/76178
title: NMR data for 2,5-dibromobenzene-1,4-diol
DOI: 10.18716/nmrshiftdb2/76422
title: NMR data for InChI=1S/C6H10N2/c7-5-6-3-1-2-4-8-6/h6,8H,1-4H2
DOI: 10.5287/bodleian:xqgr57q59
title: Quantifying the heterogeneity of macromolecular machines by mass photometry
DOI: 10.17632/vwgffx5cv3.1
title: Rainfall, groundwater, and surface water isotope data from extreme tropical cyclones (2016-2019) within the Caribbean Sea and Atlantic Ocean basins

description: This data set contains novel surface rainfall isotope compositions (δ18O, δ2H, and d-excess in ‰) of tropical cyclones Otto (Costa Rica, 2016), Nate (Costa Rica, 2017), Irma and María (Cuba and The Bahamas, 2017), and Dorian (The Bahamas, 2019). Unique high frequency tempestology sampling of rainfall enabled δ18O and δ2H isotope analysis. In total, 161 surface rainfall samples were collected in passive devices with event-based and daily frequencies, resulting in the first surface TC isotopic anatomy across the Caribbean Sea and Atlantic Ocean basins to date. Our data also provides spring (N=338) and surface water (N=334) isotope compositions after the impact of Hurricane Otto and Tropical Storm Nate in central Costa Rica. Our data may improve the current understanding of key processes governing rainfall isotope ratios in the Caribbean Sea and Atlantic Ocean basins during continental and maritime TC tracks, with applications to the interpretation of paleo-hydroclimate and groundwater recharge processes across the tropics.
DOI: 10.5281/zenodo.3714924
title: IO Islamic 1136. Ta'rîkh-i- Sulṭân Muḥammad Ḳuṭbshâhî, History of the Ḳuṭbshâhî Dynasty of Gulkundah

description: IO Islamic 1136. Ta’rîkh-i- Sulṭân Muḥammad Ḳuṭbshâhî, History of the Ḳuṭbshâhî Dynasty of Gulkundah
DOI: 10.5281/zenodo.3714925
title: IO Islamic 1136. Ta'rîkh-i- Sulṭân Muḥammad Ḳuṭbshâhî, History of the Ḳuṭbshâhî Dynasty of Gulkundah

description: IO Islamic 1136. Ta’rîkh-i- Sulṭân Muḥammad Ḳuṭbshâhî, History of the Ḳuṭbshâhî Dynasty of Gulkundah