cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.14288/1.0397572
title: Data from: Transcriptome analysis indicates considerable divergence in alternative splicing between duplicated genes in Arabidopsis thaliana

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Gene and genome duplication events have created a large number of new genes in plants that can diverge by evolving new expression profiles and functions (neofunctionalization) or dividing extant ones (subfunctionalization). Alternative splicing (AS) generates multiple types of mRNA from a single type of pre-mRNA by differential intron splicing. It can result in new protein isoforms or down-regulation of gene expression by transcript decay. Using RNA-seq we investigated the degree to which alternative splicing patterns are conserved between duplicated genes in Arabidopsis thaliana. Our results revealed that 30% of AS events in alpha whole genome duplicates, and 33% of AS events in tandem duplicates, are qualitatively conserved within leaf tissue. Loss of ancestral splice forms, as well as asymmetric gain of new splice forms, may account for this divergence. Conserved events had different frequencies, as only 31% of shared AS events in alpha whole genome duplicates and 41% of shared AS events in tandem duplicates had similar frequencies in both paralogs, indicating considerable quantitative divergence. Analysis of published RNA-seq data from nonsense mediated decay (NMD) mutants indicated that 85% of alpha whole genome duplicates and 89% of tandem duplicates have diverged in their AS-induced NMD. Our results indicate that alternative splicing shows a high degree of divergence between paralogs such that qualitatively conserved alternative splicing events tend to have quantitative divergence. Divergence in AS patterns between duplicates may be a mechanism of regulating expression level divergence.
DOI: 10.14288/1.0397573
title: Data from: The relationship between parasite fitness and host condition in an insect - virus system

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Research in host-parasite evolutionary ecology has demonstrated that environmental variation plays a large role in mediating the outcome of parasite infection. For example, crowding or low food availability can reduce host condition and make them more vulnerable to parasite infection. This observation that poor-condition hosts often suffer more from parasite infection compared to healthy hosts has led to the assumption that parasite productivity is higher in poor-condition hosts. However, the ubiquity of this negative relationship between host condition and parasite fitness is unknown. Moreover, examining the effect of environmental variation on parasite fitness has been largely overlooked in the host-parasite literature. Here we investigate the relationship between parasite fitness and host condition by using a laboratory experiment with the cabbage looper Trichoplusia ni and its viral pathogen, AcMNPV, and by surveying published host-parasite literature. Our experiments demonstrated that virus productivity was positively correlated with host food availability and the literature survey revealed both positive and negative relationships between host condition and parasite fitness. Together these data demonstrate that contrary to previous assumptions, parasite fitness can be positively or negatively correlated with host fitness. We discuss the significance of these findings for host-parasite population biology.
DOI: 10.14288/1.0397575
title: Data from: Urban rat races: spatial population genomics of brown rats (Rattus norvegicus) compared across multiple cities

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Urbanization often substantially influences animal movement and gene flow. However, few studies to date have examined gene flow of the same species across multiple cities. In this study, we examine brown rats (Rattus norvegicus) to test hypotheses about the repeatability of neutral evolution across four cities: Salvador, Brazil; New Orleans, USA; Vancouver, Canada; New York City, USA. At least 150 rats were sampled from each city and genotyped for a minimum of 15,000 genome-wide SNPs. Levels of genome-wide diversity were similar across cities, but varied across neighborhoods within cities. All four populations exhibited high spatial autocorrelation at the shortest distance classes (&lt; 500 m) due to limited dispersal. Coancestry and evolutionary clustering analyses identified genetic discontinuities within each city that coincided with a resource desert in New York City, major waterways in New Orleans, and roads in Salvador and Vancouver. Such replicated studies are crucial to assessing the generality of predictions from urban evolution, and have practical applications for pest management and public health. Future studies should include a range of global cities in different biomes, incorporate multiple species, and examine the impact of specific characteristics of the built environment and human socioeconomics on gene flow.
DOI: 10.14288/1.0397576
title: Data from: Hybrid origin of Audubon's warbler

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Several animal species have recently been shown to have hybrid origins, but no avian examples have been documented with molecular evidence. We investigate whether the Audubon's warbler, one of four visually distinct species in the yellow-rumped warbler (Dendroica coronata) complex, may have originated through hybridization between two other species in this group, the myrtle warbler and black-fronted warbler. Analysis of nuclear AFLP and sequence markers shows that Audubon's warblers are genetically intermediate, and carry a mixture of alleles otherwise found only in one or the other of their putative parental species. Audubon's warblers also carry two deeply divergent mitochondrial DNA lineages, each shared with only one putative parental form. Broad clines between Audubon's and black-fronted warblers in AFLP markers call into question the validity of these two forms as full species; nevertheless, our results suggest that the Audubon’s warbler likely originated through hybridization between two long-diverged species. It is likely that more cases of avian species of hybrid origin will be revealed by surveys of variation in nuclear DNA and other traits.
DOI: 10.14288/1.0397577
title: Data from: Effects of riparian forest harvest on streams: a meta-analysis

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;1. Riparian forest harvesting impacts streams in many ways, from altering temperature regimes, shifting geomorphic structure, increasing sediment fluxes and affecting fish populations. However, we have noted considerable variation in the results between studies that led us to ask whether the effects of forest harvesting on streams were consistent between studies. We used meta-analysis of 34 replicated studies to address the effects of riparian logging on biological and chemical components of streams in contrast to control sites. 2. We found that the overall effect sizes of several response variables in replicated studies were significantly higher than zero, especially benthic invertebrates, and nitrogen and potassium concentrations. However, there was a very large amount of variation in the effect sizes between studies, and for many measures, the effect sizes from different studies were positive or negative, indicating site-specific responses. 3. We explored whether stream size, stream gradient and regional potential evapotranspiration could explain some of the effect size variation between studies. Relations with these environmental variables were weak, but suggestive that some of the context-specific, individual outcomes might be due to underlying environmental differences between sites. 4. Synthesis and applications. Despite relatively low numbers of replicated studies, we found significant overall effects of riparian forest harvesting although the magnitude and direction of responses within individual studies were site specific. This lack of consistency in the direction of effect sizes suggests we need a more context-dependent approach to the protection of freshwaters from forest management.
DOI: 10.3535/78m-yll-6dk
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q5l-ygq-phz
title: †Cellaria elongata Canu, 1908

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.gw5q8r
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bidens pilosa",
 "Country is Niue",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023685-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/adm-kxs-rcp
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q4p-h7r-13p
title: Discoporella umbellata (Defrance, 1823)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g9d-dc6-y30
title: †Miogypsina Sacco, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/10s-r7l-rtd
title: Gen. indet. sp. indet.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ey5-14g-gqc
title: Gen. indet. sp. indet.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/35f-qxp-478
title: †Miogypsina Sacco, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/746-f6g-kqe
title: Gen. indet. sp. indet.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8sz-cd6-3td
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qn4-00h-z52
title: Margaretta Gray, 1843

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r16-44l-mks
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9t9-spg-1s2
title: Lopha Röding, 1798

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ad4-asd-lk1
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cfj-x7e-vsx
title: Hippeutis complanatus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hr3-6lb-42k
title: Discoporella umbellata (Defrance, 1823)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3vt-x17-6kd
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rvm-key-pbh
title: Crisia Lamouroux, 1812

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zj4-fmn-khf
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tph-lf5-jek
title: Apodemus sylvaticus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yyf-tsa-hvm
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e4z-na7-r90
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sdy-dc7-lzr
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.4f9cwn
title: Occurrence Download

description: A dataset listing the 8303 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Poland",
 "OccurrenceStatus is Present",
 "Year is 2021"
 ]
}

 The dataset's 8303 records were derived from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023676-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/t3e-nxh-dd0
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xfe-mdz-n17
title: Nellia tenella (Lamarck, 1816)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vqz-jsj-khq
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bk0-90t-nxw
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z47-a2g-1x5
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bwy-nya-6we
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rlw-vtv-1p3
title: Crisia denticulata (Lamarck, 1816)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/asj-pj4-fgw
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/je5-kdy-swe
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.4nc2js
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bidens pilosa",
 "Country is Papua New Guinea",
 "HasCoordinate is true"
 ]
}

 The dataset includes 109 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023686-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/9rh-bnm-8mr
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bsx-4my-clb
title: Thalamoporella Hincks, 1887

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/exz-zjc-hv6
title: Cupuladria canariensis (Busk, 1859)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l0e-37s-mmy
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4gq-q1c-33l
title: †Favorites Tschigova, 1977

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ewk-yf8-ygn
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.rx8bdq
title: Occurrence Download

description: A dataset containing 208 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Craspedia alba"
 ]
}

 The dataset includes 208 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035335-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.whuppr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oncorhynchus kisutch",
 "Country is Poland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035332-250811113504898/datasets/export for details.
DOI: 10.15468/dl.nsj8we
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Erigeron strigosus"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035334-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rgqcwq
title: Occurrence Download

description: A dataset containing 1461 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Craspedia aurantia"
 ]
}

 The dataset includes 1461 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035337-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u76xxw
title: Occurrence Download

description: A dataset containing 2377 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Aedes aegypti [GBIF Backbone Taxonomy])"
 ]
}

 The dataset includes 2377 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035336-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wmmghn
title: Occurrence Download

description: A dataset containing 6946 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Achillea clavennae"
 ]
}

 The dataset includes 6946 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035340-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ytrxv
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oncorhynchus kisutch",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035339-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7g4emp
title: Occurrence Download

description: A dataset containing 37828 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mosquito Alert Dataset"
 ]
}

 The dataset includes 37828 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035338-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cqehww
title: Occurrence Download

description: A dataset containing 166 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melinis repens",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 166 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035341-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwb49b
title: Occurrence Download

description: A dataset containing 4049 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melinis repens",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4049 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035342-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g5znqt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oncorhynchus kisutch",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035345-250811113504898/datasets/export for details.
DOI: 10.15468/dl.mpeefw
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melinis repens",
 "Country is Bahamas",
 "HasCoordinate is true"
 ]
}

 The dataset includes 16 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035343-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4xa9t
title: Occurrence Download

description: A dataset containing 394 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Craspedia minor"
 ]
}

 The dataset includes 394 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035344-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bg7gxj
title: Occurrence Download

description: A dataset containing 509 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Craspedia canens"
 ]
}

 The dataset includes 509 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035347-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gfmfaa
title: Occurrence Download

description: A dataset containing 16953 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oncorhynchus kisutch",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 16953 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035346-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c62vac
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melinis repens",
 "Country is Belize",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035351-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmqkc8
title: Occurrence Download

description: A dataset containing 757 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Achimenes antirrhina"
 ]
}

 The dataset includes 757 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035348-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.