cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26824399.v1
title: Primary Survey Data in the MRT

description: <b>Background</b>The Indonesian government built the Mass Rapid Transit (MRT) in Jakarta to reduce traffic congestion and carbon dioxide (CO<sub>2</sub>) emissions. The objective of this study is to estimate the CO<sub>2</sub> emissions reductions from switching from private transport to MRT by using a methodology proposed by the United Nations Convention on Climate Change (UNFCCC) for developing countries, namely the Clean Development Mechanism (CDM) methodology, which generates Certified Emission Reductions (CERs). This methodology is more comprehensive than other available methodologies. However, this method has not been widely used to calculate greenhouse gas (GHG) emission reductions in mass transit projects because it is complex enough to require a lot of data based on primary surveys. Therefore, this research simplifies the CDM formula to make it easier and applicable in Indonesia.<b>Methods</b>The primary data were collected using a questionnaire distributed to 480 MRT Jakarta Phase 1 user respondents in September 2019 (baseline); the secondary data were obtained from The MRT Jakarta. The data were processed using IBM SPSS Statistics 27. The simplified Clean Development Mechanism Approved Consolidated Methodology 0016 (CDM ACM 0016) was the analysis method used<b>Result</b>The results of this study indicate that 53.75% of MRT Jakarta Phase 1 users are shifting from private transportation, which has reduced CO<sub>2</sub> emissions by 2,732.7 tons in 2019 and 6,043.9 tons in 2023. Increasing the number of MRT passengers who switch from private transportation will further reduce CO<sub>2</sub> emissions.<b>Conclusion and implications</b>The simplified CDM ACM 0016 formula may be suitable for use in Indonesia. This would enable the measurement of CO₂ emission reductions through mitigation actions through MRT development to be certified by the UNFCCC. Applying this method in calculating CO₂ emission reductions, implementing strategies to increase MRT passengers, and using renewable energy electricity sources would increase CO₂ emission reductions.
DOI: 10.15468/dl.zjfjvm
title: Occurrence Download

description: A dataset containing 29824 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Leptinotarsa decemlineata (Say, 1824)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 29824 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083457-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9c6d4e
title: Occurrence Download

description: A dataset containing 716 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Anser indicus, Anser indicus, Anser indicus, Anser indicus, Anser indicus, Anser indicus, Anser indicus, Anser indicus, Anser indicus (Latham, 1790), Anser indicus Latham, 1790, Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus x caerulescens, Anser indicus x Branta canadensis, Branta leucopsis x Anser indicus, Branta leucopsis x Anser indicus, Anser indicus, Anser indicus, Anser indicus, Anser indicus, Anser indicus, Anser indicus, Anser indicus Latham, Anser indicus (Latham, 1790), Anser indicus Latham, 1790, Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham 1790), Anser indicus Latham, 1790, Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus x caerulescens, Anser indicus x Branta canadensis, Anser indicus x Branta leucopsis, Anser indicus x Branta leucopsis, Anser indicus (Latham 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Anser indicus (Latham, 1790), Branta canadensis x Anser indicus, Branta canadensis x Anser indicus, Allgoviachen tortonica Mayr, Lechner & Böhme, 2022, Anser rossii Cassin, 1861, Tadorna ferruginea (Pallas, 1764), Ciconia nigra (Linnaeus, 1758), Aquila heliaca Savigny, 1809, Anas indica Latham, 1790, Anas indica Latham, 1790, Anas indica Latham, 1790, Anas indicus Latham, 1790, Anas indica Latham, 1790, Eulabeia indica (Latham, 1790), Anas indicus Latham, 1790, Anas indicus Latham., 1790, Eulabeia indica (Latham, 1790), Anas indicus Latham, 1790)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "StateProvince is one of (Qinghai)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 716 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083459-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fzjy55
title: Occurrence Download

description: A dataset containing 102081 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is India Biodiversity Portal publication grade dataset"
 ]
}

 The dataset includes 102081 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083438-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dpbgmk
title: Occurrence Download

description: A dataset containing 14970 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ageratina adenophora (Spreng.) R.M.King & H.Rob."
 ]
}

 The dataset includes 14970 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083458-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vzrf24
title: Occurrence Download

description: A dataset containing 29824 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Leptinotarsa decemlineata (Say, 1824)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 29824 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083460-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc200g1k
title: CCDC 1847477: Experimental Crystal Structure Determination

description: Related Article: Tamás Szabó, Attila Bényei, László Szilágyi|2019|Carbohydr.Res.|473|88|doi:10.1016/j.carres.2019.01.002
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc200g2l
title: CCDC 1847478: Experimental Crystal Structure Determination

description: Related Article: Tamás Szabó, Attila Bényei, László Szilágyi|2019|Carbohydr.Res.|473|88|doi:10.1016/j.carres.2019.01.002
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc200g3m
title: CCDC 1847479: Experimental Crystal Structure Determination

description: Related Article: Tamás Szabó, Attila Bényei, László Szilágyi|2019|Carbohydr.Res.|473|88|doi:10.1016/j.carres.2019.01.002
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20397p
title: CCDC 1850211: Experimental Crystal Structure Determination

description: Related Article: Vladimir A. Potapov, Roman S. Ishigeev, Svetlana V. Amosova, Tatyana N. Borodina|2019|Tetrahedron Lett.|60|475|doi:10.1016/j.tetlet.2019.01.001
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20398q
title: CCDC 1850212: Experimental Crystal Structure Determination

description: Related Article: Vladimir A. Potapov, Roman S. Ishigeev, Svetlana V. Amosova, Tatyana N. Borodina|2019|Tetrahedron Lett.|60|475|doi:10.1016/j.tetlet.2019.01.001
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20399r
title: CCDC 1850213: Experimental Crystal Structure Determination

description: Related Article: Vladimir A. Potapov, Roman S. Ishigeev, Svetlana V. Amosova, Tatyana N. Borodina|2019|Tetrahedron Lett.|60|475|doi:10.1016/j.tetlet.2019.01.001
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2039bs
title: CCDC 1850214: Experimental Crystal Structure Determination

description: Related Article: Vladimir A. Potapov, Roman S. Ishigeev, Svetlana V. Amosova, Tatyana N. Borodina|2019|Tetrahedron Lett.|60|475|doi:10.1016/j.tetlet.2019.01.001
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20cd93
title: CCDC 1857994: Experimental Crystal Structure Determination

description: Related Article: Yun-Feng Wang, Zhi-Jie Qin, Zheng-Fang Tian, Yan Bai, Ya-Min Li, Yang-Wei Zhang, Dong-Bin Dang|2019|J.Alloys Compd.|784|961|doi:10.1016/j.jallcom.2019.01.082
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20cdb4
title: CCDC 1857995: Experimental Crystal Structure Determination

description: Related Article: Yun-Feng Wang, Zhi-Jie Qin, Zheng-Fang Tian, Yan Bai, Ya-Min Li, Yang-Wei Zhang, Dong-Bin Dang|2019|J.Alloys Compd.|784|961|doi:10.1016/j.jallcom.2019.01.082
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20cdc5
title: CCDC 1857996: Experimental Crystal Structure Determination

description: Related Article: Yun-Feng Wang, Zhi-Jie Qin, Zheng-Fang Tian, Yan Bai, Ya-Min Li, Yang-Wei Zhang, Dong-Bin Dang|2019|J.Alloys Compd.|784|961|doi:10.1016/j.jallcom.2019.01.082
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20cdd6
title: CCDC 1857997: Experimental Crystal Structure Determination

description: Related Article: Yun-Feng Wang, Zhi-Jie Qin, Zheng-Fang Tian, Yan Bai, Ya-Min Li, Yang-Wei Zhang, Dong-Bin Dang|2019|J.Alloys Compd.|784|961|doi:10.1016/j.jallcom.2019.01.082
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.2536018
title: Shapefiles and data associated with the study of "Subsurface Sediment Mobilization in the Southern Chryse Planitia on Mars"

description: This zip file contains the shapefiles for ArcGIS project with the positions of the five types of edifices within the southern part of the Chryse Planitia on Mars which were subject of the study "Subsurface Sediment Mobilization in the Southern Chryse Planitia on Mars" by Brož et al. (2019, JGR-Planets).
DOI: 10.5281/zenodo.2536019
title: Shapefiles and data associated with the study of "Subsurface Sediment Mobilization in the Southern Chryse Planitia on Mars"

description: This zip file contains the shapefiles for ArcGIS project with the positions of the five types of edifices within the southern part of the Chryse Planitia on Mars which were subject of the study "Subsurface Sediment Mobilization in the Southern Chryse Planitia on Mars" by Brož et al. (2019, JGR-Planets).
DOI: 10.5281/zenodo.2534701
title: SIMPATICO_ES_Citizenpedia_FinalExport

description: The current package contains the questions and answers created by citizens using the Citizenpedia in the Galicia evaluation of the results of H2020 project SIMPATICO that were undertaken between September 24th 2018 and October 15th 2018. The data is exported from the MongoDB instance that was used to manage all the Citizenpedia content. For more information about the setup for conducting the tests and the results achieved please consult project deliverable "D6.6 SIMPATICO Evaluation Report v2". All project deliverables, except where noted, are public and are available at Zenodo community reachable at https://zenodo.org/communities/h2020-simpatico-692819.

The following caveats need to be highlighted for this data set:

- The format is JSON (Javascript objects) as provided by mongodb export tool. 

- Data is completely anonymized: no traces of personal data for any of the 374 participants can be found in this file.
DOI: 10.5281/zenodo.2534702
title: SIMPATICO_ES_Citizenpedia_FinalExport

description: The current package contains the questions and answers created by citizens using the Citizenpedia in the Galicia evaluation of the results of H2020 project SIMPATICO that were undertaken between September 24th 2018 and October 15th 2018. The data is exported from the MongoDB instance that was used to manage all the Citizenpedia content. For more information about the setup for conducting the tests and the results achieved please consult project deliverable "D6.6 SIMPATICO Evaluation Report v2". All project deliverables, except where noted, are public and are available at Zenodo community reachable at https://zenodo.org/communities/h2020-simpatico-692819.

The following caveats need to be highlighted for this data set:

- The format is JSON (Javascript objects) as provided by mongodb export tool. 

- Data is completely anonymized: no traces of personal data for any of the 374 participants can be found in this file.
DOI: 10.5286/isis.e.101133082
title: 1910598
DOI: 10.5286/isis.e.101133108
title: 1910330
DOI: 10.5281/zenodo.2536050
title: Raw data corresponding to Huestegge, S. M., Raettig, T., & Huestegge, L. (2019). "Are face-incongruent voices harder to process? Effects of face-voice gender incongruency on basic cognitive information processing." Journal: Experimental Psychology.

description: Raw data file prior to subject-based aggregation. Variables and values are decribed within the file. For further reference and specifications please also refer to the original publication in the journal Experimental Psychology.
DOI: 10.5281/zenodo.2536051
title: Raw data corresponding to Huestegge, S. M., Raettig, T., & Huestegge, L. (2019). "Are face-incongruent voices harder to process? Effects of face-voice gender incongruency on basic cognitive information processing." Journal: Experimental Psychology.

description: Raw data file prior to subject-based aggregation. Variables and values are decribed within the file. For further reference and specifications please also refer to the original publication in the journal Experimental Psychology.
DOI: 10.5258/soton/d0772
title: Supplementary videos for "Collective cell behaviour in long-range mechanosensing of extracellular matrix dimensions"

description: Supplementary videos for "Collective cell behaviour in long-range mechanosensing of extracellular matrix dimensions", PhD Thesis, Camelia Gratiela Muresan (Tusan). Videos 4, 5, 6, 7, 8, 9 were published in Collective cell behavior in mechanosensing of substrate thickness by Tusan, C. G. et al published in Biophysical Journal.Funded by EPSRC and Rosetrees Trust.
DOI: 10.5281/zenodo.2536104
title: Supplementary File S2: Plasmids for independently tunable, low-noise gene expression

description: Supplementary File S2 README

2019-April-26

"Plasmids for independently tunable, low-noise gene expression" (Version 2)

João P. N. Silva, Soraia Vidigal Lopes, Diogo J. Grilo, Zach Hensel

This file describes the contents of the supplementary file for this manuscript. Python scripts were run in a Python 3 environment on OSX with various scientific python packages updated as of April 2019. With minor modifications for any similar environment it should be possible to generate Figures 1, 2, and 4 in the manuscript from these scripts and raw data.

Contents:

\dna sequences<br>
    \pDG101.gb Annotated DNA sequence in genbank format of plasmid pDG101<br>
    \pJS101.gb Annotated DNA sequence in genbank format of plasmid pJS101 (AddGene #118280)<br>
    \pJS102.gb Annotated DNA sequence in genbank format of plasmid pJS102 (AddGene #118281)<br>
    \pZH501.gb Annotated DNA sequence in genbank format of plasmid pZH501<br>
    \pZH509.gb Annotated DNA sequence in genbank format of plasmid pZH509 (AddGene #102664)<br>
    \pZH713.gb Annotated DNA sequence in genbank format of plasmid pZH713<br>
    \ZHX99.gb Annotated DNA sequence in genbank format for E. coli MG1655 chromosome insertion mutant ZHX99<br>
    <br>
\data<br>
    \DG FCS Data: Raw flow cytometry data from BioRad S3 sorted by day and experimental condition; file name format: plasmid_inducer-concentration_inducer-units_inducer.fcs<br>
    \pJS101 pDG101 independence<br>
        \"quick scope intensity.ijm" Fiji macro used to extract average fluorescence intensities<br>
        \"Microscope Data\" Microscope data analyzed using the above Fiji macro; directory names indicate ATc and IPTG concentrations for each experimentation condition/replicate<br>
        \"intensity analysis\"<br>
            X_nM_ATc_Y_uM_IPTG.csv files: Exported CSV data from Fiji for each condition<br>
            backgrounds.csv: Average intensity for every condition, image frame, and color for background subtraction<br>
        \"images for Figure 4": Image stack with raw images used to generate Fig 4A and 4B

\code<br>
    \fcsAnalysis_final_181228.py step-wise script for generating Figures 1 and 2 from FCS data<br>
    \fcsCalcDirectory181228.py script containing functions for FCS analysis and figure generation<br>
    \fcsImages PDF figures output by FCS analysis scripts<br>
    \FlowCal-master Distribution of the FlowCal library used in analysis for this manuscript; this is distributed under the MIT license<br>
    \scopeAnalysisWorkflow190430.py step-wise script for generating Figures 4C and 4D from cell fluorescence microscopy data in CSV format exported from Fiji<br>
    \scopeCalcDirectory190430.py script containing functions for microscopy data analysis and figure generation