cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.7jqef7
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Arapaima gigas (Schinz, 1822)",
 "Year 1979-2022"
 ]
}

 The dataset includes 29 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140250-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.amncsf
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trichoglottis luzonensis Ames"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140864-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.unqbr5
title: Occurrence Download

description: A dataset containing 650 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cottus amblystomopsis Schmidt, 1904"
 ]
}

 The dataset includes 650 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063799-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.32rggx
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stauranthera coerulea (Blume) Merr."
 ]
}

 The dataset includes 18 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140847-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qww86c
title: Occurrence Download

description: A dataset containing 311 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is The New York Botanical Garden Herbarium (NY)",
 "TaxonKey is Cercis canadensis L."
 ]
}

 The dataset includes 311 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0430922-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2v2mna
title: Occurrence Download

description: A dataset containing 125962 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taxus baccata L."
 ]
}

 The dataset includes 125962 records from 864 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0147409-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24316816
title: Data from - Myers’ divisions revisited: Contemporary evidence for distinct trait differences among global inland fishes

description: Article DOI: 10.1111/faf.12832Eighty years ago, George S. Myers classified inland fishes in three divisions (primary, secondary and peripheral) based on their salinity tolerance and eco-evolutionary history. Although this classification has been followed by many fish studies, it has also received considerable criticism. Here, we aim to test for differences in salinity and thermal tolerance, species traits and distribution patterns among the three divisions using data for about 21,000 species. We found that primary fishes have much less salinity tolerance than secondary and peripheral species, with some secondary fishes displaying the highest tolerances (&gt; 100 ppt). We also provide, for the first time, evidence of significant phylogenetic signal of salinity tolerance, comparable in magnitude to conservative traits, and show that studied peripheral and secondary species have maintained or even developed salinity tolerance, in contrast to primary fishes. Although peripheral fishes are the most different, and despite the large variability observed within some families, primary and secondary species also show differences in morphology and life history traits. The distribution ranges and genetic diversity of primary and secondary fish divisions are similar and differ from peripheral species, suggesting that although there is evidence of oceanic dispersal of a few secondary fishes at evolutionary time scales, it is a rare contemporary phenomenon. Importantly, a few findings outlined in this study, namely differences in salinity tolerance, rely on limited data. Thus, we urge for additional empirical research on the salinity tolerance of freshwater fish, which remains largely unexplored, to help clarify differences among and within clades.
DOI: 10.6084/m9.figshare.24316816.v2
title: Data from - Myers’ divisions revisited: Contemporary evidence for distinct trait differences among global inland fishes

description: Article DOI: 10.1111/faf.12832Eighty years ago, George S. Myers classified inland fishes in three divisions (primary, secondary and peripheral) based on their salinity tolerance and eco-evolutionary history. Although this classification has been followed by many fish studies, it has also received considerable criticism. Here, we aim to test for differences in salinity and thermal tolerance, species traits and distribution patterns among the three divisions using data for about 21,000 species. We found that primary fishes have much less salinity tolerance than secondary and peripheral species, with some secondary fishes displaying the highest tolerances (&gt; 100 ppt). We also provide, for the first time, evidence of significant phylogenetic signal of salinity tolerance, comparable in magnitude to conservative traits, and show that studied peripheral and secondary species have maintained or even developed salinity tolerance, in contrast to primary fishes. Although peripheral fishes are the most different, and despite the large variability observed within some families, primary and secondary species also show differences in morphology and life history traits. The distribution ranges and genetic diversity of primary and secondary fish divisions are similar and differ from peripheral species, suggesting that although there is evidence of oceanic dispersal of a few secondary fishes at evolutionary time scales, it is a rare contemporary phenomenon. Importantly, a few findings outlined in this study, namely differences in salinity tolerance, rely on limited data. Thus, we urge for additional empirical research on the salinity tolerance of freshwater fish, which remains largely unexplored, to help clarify differences among and within clades.
DOI: 10.6084/m9.figshare.24316816.v1
title: Data from - Myers’ divisions revisited: Contemporary evidence for distinct trait differences among global inland fishes

description: Article DOI: 10.1111/faf.12832Eighty years ago, George S. Myers classified inland fishes in three divisions (primary, secondary and peripheral) based on their salinity tolerance and eco-evolutionary history. Although this classification has been followed by many fish studies, it has also received considerable criticism. Here, we aim to test for differences in salinity and thermal tolerance, species traits and distribution patterns among the three divisions using data for about 21,000 species. We found that primary fishes have much less salinity tolerance than secondary and peripheral species, with some secondary fishes displaying the highest tolerances (&gt; 100 ppt). We also provide, for the first time, evidence of significant phylogenetic signal of salinity tolerance, comparable in magnitude to conservative traits, and show that studied peripheral and secondary species have maintained or even developed salinity tolerance, in contrast to primary fishes. Although peripheral fishes are the most different, and despite the large variability observed within some families, primary and secondary species also show differences in morphology and life history traits. The distribution ranges and genetic diversity of primary and secondary fish divisions are similar and differ from peripheral species, suggesting that although there is evidence of oceanic dispersal of a few secondary fishes at evolutionary time scales, it is a rare contemporary phenomenon. Importantly, a few findings outlined in this study, namely differences in salinity tolerance, rely on limited data. Thus, we urge for additional empirical research on the salinity tolerance of freshwater fish, which remains largely unexplored, to help clarify differences among and within clades.
DOI: 10.15468/dl.tzfkhv
title: Occurrence Download

description: A dataset containing 2187857 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "GadmGid is one of (COL.8_2)"
 ]
}

 The dataset includes 2187857 records from 341 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022473-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p7bh3a
title: Occurrence Download

description: A dataset containing 1803 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Living Specimen)",
 "Geometry POLYGON((-120 -60,-25 -60,-25 30,-120 30,-120 -60))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Agave lechuguilla Torr."
 ]
}

 The dataset includes 1803 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022477-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bcp33u
title: Occurrence Download

description: A dataset containing 452138 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Viperidae"
 ]
}

 The dataset includes 452138 records from 1836 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022471-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive155919.20230509.8.1
title: Lactococcus lactis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive155920.20230509.8.1
title: Microbacterium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive155921.20230509.8.1
title: Weissella ceti

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive155922.20230509.8.1
title: Actinomyces oris

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive155923.20230509.8.1
title: Bacillus atrophaeus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive155924.20230509.8.1
title: Bradyrhizobium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive155925.20230509.8.1
title: Acinetobacter lwoffii

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive155926.20230509.8.1
title: Streptococcus dysgalactiae subsp. equisimilis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive155927.20230509.8.1
title: Listeria monocytogenes

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive155928.20230509.8.1
title: Staphylococcus auricularis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive155929.20230509.8.1
title: Neisseria sicca

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive155930.20230509.8.1
title: Francisella tularensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive155931.20230509.8.1
title: Francisella tularensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive155932.20230509.8.1
title: Micrococcus flavus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive155933.20230509.8.1
title: Burkholderia sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive155934.20230509.8.1
title: Massilia brevitalea

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive155935.20230509.8.1
title: Schaalia turicensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive155936.20230509.8.1
title: Fusobacterium necrophorum subsp. funduliforme

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive155937.20230509.8.1
title: Winkia neuii subsp. anitrata

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.11404333
title: Voxel-level summary statistics of hippocampus shape, white matter microstructure, and cortical surface curvature in UK Biobank (n=33,324)

description: This deposit hosts GWAS summary statistics of hippocampus shape (n=33,324), white matter microstructure (n=33,324), and cortical surface curvature (n=15,752) using UKB unrelated white subjects. The data was generated by using the highly efficient imaging genetics (HEIG v1.1.0) framework where only the triplets - summary statistics of low-dimensional representations (LDRs), the functional bases, and the variance-covariance matrix LDRs - are shared, which is sufficient to recover all voxel-variant pairs as well as to conduct voxel-level heritability and (cross-trait) genetic correlation analysis. Check the tutorial and the example data used in the tutorial. 

The shared data includes:

1. Triplets for hippocampus shape measured by the radial distance from the medial model for each vertex. The original images contain 30,000 vertices while the shared data contains 49 LDRs. Left and right hemispheres were analyzed separately, each with 15,000 vertices.

2. Triplets for 21 white matter tracts measured by fractional anisotropy. The original images contain 32,217 voxels and each tract contains 88 ~ 3503 voxels while the shared data contains 1,034 LDRs. Tracts were analyzed separately.

3. Triplets for cortical surface curvature. The original images contain 59,412 vertices while the shared data contains 1,750 LDRs. The entire brain was analyzed as a whole.

4. LD matrix and its inverse for 22 chromosomes including 460k genotyped SNPs. LD matrix and its inverse were estimated by using two separate datasets each containing 8.4k white unrelated subjects in UKB. Two regularization levels are provided: {85%, 80%} for heritability and genetic correlations within images and {75%, 70%} for cross-trait genetic correlations.

5. LD matrix and its inverse for 22 chromosomes including 1.2 million imputed HapMap3 SNPs.  LD matrix and its inverse were estimated by using two separate datasets each containing 42k white unrelated subjects in UKB. Two regularization levels are provided: {98%, 95%} for heritability and genetic correlations within images and {90%, 85%} for cross-trait genetic correlations.
DOI: 10.5281/zenodo.11404334
title: Voxel-level summary statistics of hippocampus shape and white matter microstructure

description: This deposit hosts voxel-level GWAS summary statistics of hippocampus shape and white matter microstructure using 33,000 UKB unrelated white subjects. The data was generated by using the highly-efficient imaging genetics (HEIG v1.0.0) framework where only the triplets - summary statistics of low-dimensional representations (LDRs), the functional bases, and the inner product of covariate-effect-removed LDRs - are shared, which is sufficient to recover all voxel-variant pairs as well as to conduct voxel-level heritability and (cross-trait) genetic correlation analysis. Check the tutorial and the example data used in the tutorial. Check code for how to use the data to reproduce the results in the manuscript (not available yet).

The shared data includes:

1. Triplets for hippocampus shape measured by the radial distance from the medial model for each vertex. The original images contain 15,000 vertices. Left and right hemispheres were analyzed separately.

2. Triplets for 21 white matter tracts measured by fractional anisotropy. The original images contain 88 ~ 3503 voxels. Each tracts were analyzed separately.

3. LD matrix and its inverse for 22 chromosomes including 460k genotyped SNPs. LD matrix and its inverse were estimated by using two separate datasets each containing 8.4k white unrelated subjects in UKB. Two regularization levels are provided: {85%, 80%} for heritability and genetic correlations within images and {75%, 70%} for cross-trait genetic correlations.

4. LD matrix and its inverse for 22 chromosomes including 1.2 million imputed HapMap3 SNPs.  LD matrix and its inverse were estimated by using two separate datasets each containing 42k white unrelated subjects in UKB. Two regularization levels are provided: {98%, 95%} for heritability and genetic correlations within images and {90%, 85%} for cross-trait genetic correlations.
DOI: 10.5281/zenodo.13766419
title: Voxel-level summary statistics of hippocampus shape, white matter microstructure, and cortical surface curvature in UK Biobank (n=33,324)

description: This deposit hosts GWAS summary statistics of hippocampus shape (n=33,324), white matter microstructure (n=33,324), and cortical surface curvature (n=15,752) using UKB unrelated white subjects. The data was generated by using the highly efficient imaging genetics (HEIG v1.1.0) framework where only the triplets - summary statistics of low-dimensional representations (LDRs), the functional bases, and the variance-covariance matrix LDRs - are shared, which is sufficient to recover all voxel-variant pairs as well as to conduct voxel-level heritability and (cross-trait) genetic correlation analysis. Check the tutorial and the example data used in the tutorial. 

The shared data includes:

1. Triplets for hippocampus shape measured by the radial distance from the medial model for each vertex. The original images contain 30,000 vertices while the shared data contains 49 LDRs. Left and right hemispheres were analyzed separately, each with 15,000 vertices.

2. Triplets for 21 white matter tracts measured by fractional anisotropy. The original images contain 32,217 voxels and each tract contains 88 ~ 3503 voxels while the shared data contains 1,034 LDRs. Tracts were analyzed separately.

3. Triplets for cortical surface curvature. The original images contain 59,412 vertices while the shared data contains 1,750 LDRs. The entire brain was analyzed as a whole.

4. LD matrix and its inverse for 22 chromosomes including 460k genotyped SNPs. LD matrix and its inverse were estimated by using two separate datasets each containing 8.4k white unrelated subjects in UKB. Two regularization levels are provided: {85%, 80%} for heritability and genetic correlations within images and {75%, 70%} for cross-trait genetic correlations.

5. LD matrix and its inverse for 22 chromosomes including 1.2 million imputed HapMap3 SNPs.  LD matrix and its inverse were estimated by using two separate datasets each containing 42k white unrelated subjects in UKB. Two regularization levels are provided: {98%, 95%} for heritability and genetic correlations within images and {90%, 85%} for cross-trait genetic correlations.
DOI: 10.5281/zenodo.13787684
title: Voxel-level summary statistics of hippocampus shape, white matter microstructure, and cortical surface curvature in UK Biobank (n=33,324)

description: This deposit hosts GWAS summary statistics of hippocampus shape (n=33,324), white matter microstructure (n=33,324), and cortical surface curvature (n=15,752) using UKB unrelated white subjects. The data was generated by using the highly efficient imaging genetics (HEIG v1.1.0) framework where only the triplets - summary statistics of low-dimensional representations (LDRs), the functional bases, and the variance-covariance matrix LDRs - are shared, which is sufficient to recover all voxel-variant pairs as well as to conduct voxel-level heritability and (cross-trait) genetic correlation analysis. Check the tutorial and the example data used in the tutorial. 

The shared data includes:

1. Triplets for hippocampus shape measured by the radial distance from the medial model for each vertex. The original images contain 30,000 vertices while the shared data contains 49 LDRs. Left and right hemispheres were analyzed separately, each with 15,000 vertices.

2. Triplets for 21 white matter tracts measured by fractional anisotropy. The original images contain 32,217 voxels and each tract contains 88 ~ 3503 voxels while the shared data contains 1,034 LDRs. Tracts were analyzed separately.

3. Triplets for cortical surface curvature. The original images contain 59,412 vertices while the shared data contains 1,750 LDRs. The entire brain was analyzed as a whole.

4. LD matrix and its inverse for 22 chromosomes including 460k genotyped SNPs. LD matrix and its inverse were estimated by using two separate datasets each containing 8.4k white unrelated subjects in UKB. Two regularization levels are provided: {85%, 80%} for heritability and genetic correlations within images and {75%, 70%} for cross-trait genetic correlations.

5. LD matrix and its inverse for 22 chromosomes including 1.2 million imputed HapMap3 SNPs.  LD matrix and its inverse were estimated by using two separate datasets each containing 42k white unrelated subjects in UKB. Two regularization levels are provided: {98%, 95%} for heritability and genetic correlations within images and {90%, 85%} for cross-trait genetic correlations.
DOI: 10.13145/bacdive155938.20230509.8.1
title: Deinococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive155939.20230509.8.1
title: Aggregatibacter aphrophilus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.