cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccs3c6f
title: CCDC 718214: Experimental Crystal Structure Determination

description: Related Article: Xu Cheng, S.Vellalath, R.Goddard, B.List|2008|J.Am.Chem.Soc.|130|15786|doi:10.1021/ja8071034
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs3062
title: CCDC 717873: Experimental Crystal Structure Determination

description: Related Article: T.Hatakeyama, M.Nakamura, E.Nakamura|2008|J.Am.Chem.Soc.|130|15688|doi:10.1021/ja806258v
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.17393713
title: Raw PacBio Full-Length 16S rRNA Sequencing Data of Canine Fecal Microbiota in Response to Oral Probiotic and Postbiotic Supplementation: Veterinary Research Communications Dataset (DOI: 10.1007/s11259-025-10962-y)

description: This dataset contains raw PacBio full-length 16S rRNA fastq sequencing reads from fecal microbiota samples of dogs following oral daily probiotic and postbiotic supplementation (ODPPS). These data were generated as part of the study “Oral probiotic and postbiotic supplementation enhances the abundance of Lactobacillus acidophilus, Lactobacillus johnsonii, and Limosilactobacillus reuteri in both canine skin and gastrointestinal microbiota: insights from long-read 16S rRNA gene sequencing” accepted in Veterinary Research Communications (DOI: 10.1007/s11259-025-10962-y).

Samples were collected longitudinally at three time points (Day 0, Day 30, and Day 90): 

Samples were collected at three time points:

• Day 0 – baseline (before ODPPS)

• Day 30 – short-term supplementation

• Day 90 – long-term supplementation  

enabling assessment of microbiota changes in response to ODPPS.

DNA was extracted from fecal samples using the QIAGEN DNeasy Blood and Tissue Kit, followed by PacBio SMRTbell library preparation and sequencing on the Sequel II/IIe platform. Data comprise circular consensus sequencing (CCS) HiFi reads (~1.5 kb), suitable for microbial community profiling and taxonomic classification using tools such as Greengenes2 and QIAGEN CLC Microbial Genomics Module. For details of experimental design, sample processing, sequencing, and analysis, refer to the manuscript and supplementary materials.

These data enable comprehensive investigations of gut microbiota composition and its modulation by probiotic and postbiotic interventions in dogs, and support comparative analyses of skin and gastrointestinal microbial communities.

Data format:



Raw PacBio fastq files, compressed as a zip archive

Associated metadata for samples and controls


Citation:Please cite the accompanying article:Mohammadi Dehcheshmeh M, Grant L, Ebrahimie E, Khabiri A, Hemmatzadeh F, Shipstone M, Trott DJ (2025). Oral probiotic and postbiotic supplementation enhances the abundance of Lactobacillus acidophilus, Lactobacillus johnsonii, and Limosilactobacillus reuteri in both canine skin and gastrointestinal microbiota: insights from long-read 16S rRNA gene sequencing. Veterinary Research Communications. DOI: 10.1007/s11259-025-10962-y.

Contact:For questions, contact the corresponding author: esmaeil.ebrahimie@adelaide.edu.au
DOI: 10.5281/zenodo.17393714
title: Raw PacBio Full-Length 16S rRNA Sequencing Data of Canine Fecal Microbiota in Response to Oral Probiotic and Postbiotic Supplementation: Veterinary Research Communications Dataset (DOI: 10.1007/s11259-025-10962-y)

description: This dataset contains raw PacBio full-length 16S rRNA fastq sequencing reads from fecal microbiota samples of dogs following oral daily probiotic and postbiotic supplementation (ODPPS). These data were generated as part of the study “Oral probiotic and postbiotic supplementation enhances the abundance of Lactobacillus acidophilus, Lactobacillus johnsonii, and Limosilactobacillus reuteri in both canine skin and gastrointestinal microbiota: insights from long-read 16S rRNA gene sequencing” accepted in Veterinary Research Communications (DOI: 10.1007/s11259-025-10962-y).

Samples were collected longitudinally at three time points (Day 0, Day 30, and Day 90): 

Samples were collected at three time points:

• Day 0 – baseline (before ODPPS)

• Day 30 – short-term supplementation

• Day 90 – long-term supplementation  

enabling assessment of microbiota changes in response to ODPPS.

DNA was extracted from fecal samples using the QIAGEN DNeasy Blood and Tissue Kit, followed by PacBio SMRTbell library preparation and sequencing on the Sequel II/IIe platform. Data comprise circular consensus sequencing (CCS) HiFi reads (~1.5 kb), suitable for microbial community profiling and taxonomic classification using tools such as Greengenes2 and QIAGEN CLC Microbial Genomics Module. For details of experimental design, sample processing, sequencing, and analysis, refer to the manuscript and supplementary materials.

These data enable comprehensive investigations of gut microbiota composition and its modulation by probiotic and postbiotic interventions in dogs, and support comparative analyses of skin and gastrointestinal microbial communities.

Data format:



Raw PacBio fastq files, compressed as a zip archive

Associated metadata for samples and controls


Citation:Please cite the accompanying article:Mohammadi Dehcheshmeh M, Grant L, Ebrahimie E, Khabiri A, Hemmatzadeh F, Shipstone M, Trott DJ (2025). Oral probiotic and postbiotic supplementation enhances the abundance of Lactobacillus acidophilus, Lactobacillus johnsonii, and Limosilactobacillus reuteri in both canine skin and gastrointestinal microbiota: insights from long-read 16S rRNA gene sequencing. Veterinary Research Communications. DOI: 10.1007/s11259-025-10962-y.

Contact:For questions, contact the corresponding author: esmaeil.ebrahimie@adelaide.edu.au
DOI: 10.5517/ccr9kp8
title: CCDC 694390: Experimental Crystal Structure Determination

description: Related Article: Y.-Carpenter, C.A.Dyker, N.Burford, M.D.Lumsden, A.Decken|2008|J.Am.Chem.Soc.|130|15732|doi:10.1021/ja805911a
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccr9kq9
title: CCDC 694391: Experimental Crystal Structure Determination

description: Related Article: Y.-Carpenter, C.A.Dyker, N.Burford, M.D.Lumsden, A.Decken|2008|J.Am.Chem.Soc.|130|15732|doi:10.1021/ja805911a
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccr9krb
title: CCDC 694392: Experimental Crystal Structure Determination

description: Related Article: Y.-Carpenter, C.A.Dyker, N.Burford, M.D.Lumsden, A.Decken|2008|J.Am.Chem.Soc.|130|15732|doi:10.1021/ja805911a
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrb0fh
title: CCDC 694816: Experimental Crystal Structure Determination

description: Related Article: Y.-Carpenter, C.A.Dyker, N.Burford, M.D.Lumsden, A.Decken|2008|J.Am.Chem.Soc.|130|15732|doi:10.1021/ja805911a
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs3fz8
title: CCDC 718300: Experimental Crystal Structure Determination

description: Related Article: D.Buccella, K.E.Janak, G.Parkin|2008|J.Am.Chem.Soc.|130|16187|doi:10.1021/ja8070545
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs3g0b
title: CCDC 718301: Experimental Crystal Structure Determination

description: Related Article: D.Buccella, K.E.Janak, G.Parkin|2008|J.Am.Chem.Soc.|130|16187|doi:10.1021/ja8070545
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs3g1c
title: CCDC 718302: Experimental Crystal Structure Determination

description: Related Article: D.Buccella, K.E.Janak, G.Parkin|2008|J.Am.Chem.Soc.|130|16187|doi:10.1021/ja8070545
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs3g2d
title: CCDC 718303: Experimental Crystal Structure Determination

description: Related Article: D.Buccella, K.E.Janak, G.Parkin|2008|J.Am.Chem.Soc.|130|16187|doi:10.1021/ja8070545
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs3g3f
title: CCDC 718304: Experimental Crystal Structure Determination

description: Related Article: D.Buccella, K.E.Janak, G.Parkin|2008|J.Am.Chem.Soc.|130|16187|doi:10.1021/ja8070545
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs3g4g
title: CCDC 718305: Experimental Crystal Structure Determination

description: Related Article: D.Buccella, K.E.Janak, G.Parkin|2008|J.Am.Chem.Soc.|130|16187|doi:10.1021/ja8070545
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs3g5h
title: CCDC 718306: Experimental Crystal Structure Determination

description: Related Article: D.Buccella, K.E.Janak, G.Parkin|2008|J.Am.Chem.Soc.|130|16187|doi:10.1021/ja8070545
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs3d7h
title: CCDC 718246: Experimental Crystal Structure Determination

description: Related Article: Dongmei Liu, Li Dang, Yi Sun, Hoi-Shan Chan, Zhenyang Lin, Zuowei Xie|2008|J.Am.Chem.Soc.|130|16103|doi:10.1021/ja8067098
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs3d8j
title: CCDC 718247: Experimental Crystal Structure Determination

description: Related Article: Dongmei Liu, Li Dang, Yi Sun, Hoi-Shan Chan, Zhenyang Lin, Zuowei Xie|2008|J.Am.Chem.Soc.|130|16103|doi:10.1021/ja8067098
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs3dbl
title: CCDC 718249: Experimental Crystal Structure Determination

description: Related Article: Dongmei Liu, Li Dang, Yi Sun, Hoi-Shan Chan, Zhenyang Lin, Zuowei Xie|2008|J.Am.Chem.Soc.|130|16103|doi:10.1021/ja8067098
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs3dcm
title: CCDC 718250: Experimental Crystal Structure Determination

description: Related Article: Dongmei Liu, Li Dang, Yi Sun, Hoi-Shan Chan, Zhenyang Lin, Zuowei Xie|2008|J.Am.Chem.Soc.|130|16103|doi:10.1021/ja8067098
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs3ddn
title: CCDC 718251: Experimental Crystal Structure Determination

description: Related Article: Dongmei Liu, Li Dang, Yi Sun, Hoi-Shan Chan, Zhenyang Lin, Zuowei Xie|2008|J.Am.Chem.Soc.|130|16103|doi:10.1021/ja8067098
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccr5h9p
title: CCDC 690472: Experimental Crystal Structure Determination

description: Related Article: A.V.Borisov, V.K.Osmanov, G.N.Borisova, Z.V.Matsulevich, G.K.Fukin|2009|Mendeleev Commun.|19|49|doi:10.1016/j.mencom.2009.01.020
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccr5hbq
title: CCDC 690473: Experimental Crystal Structure Determination

description: Related Article: A.V.Borisov, V.K.Osmanov, G.N.Borisova, Z.V.Matsulevich, G.K.Fukin|2009|Mendeleev Commun.|19|49|doi:10.1016/j.mencom.2009.01.020
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccr45rs
title: CCDC 689215: Experimental Crystal Structure Determination

description: Related Article: V.F.Mironov, Y.Y.Kotorova, L.M.Burnaeva, A.A.Balandina, S.K.Latypov, A.B.Dobrynin, A.T.Gubaidullin, I.A.Litvinov, R.Z.Musin, I.V.Konovalova|2009|Mendeleev Commun.|19|34|doi:10.1016/j.mencom.2009.01.014
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccr45st
title: CCDC 689216: Experimental Crystal Structure Determination

description: Related Article: V.F.Mironov, Y.Y.Kotorova, L.M.Burnaeva, A.A.Balandina, S.K.Latypov, A.B.Dobrynin, A.T.Gubaidullin, I.A.Litvinov, R.Z.Musin, I.V.Konovalova|2009|Mendeleev Commun.|19|34|doi:10.1016/j.mencom.2009.01.014
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccry0j6
title: CCDC 713078: Experimental Crystal Structure Determination

description: Related Article: T.Mutig, E.Kemnitz, S.I.Troyanov|2009|Mendeleev Commun.|19|30|doi:10.1016/j.mencom.2009.01.012
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccry0k7
title: CCDC 713079: Experimental Crystal Structure Determination

description: Related Article: T.Mutig, E.Kemnitz, S.I.Troyanov|2009|Mendeleev Commun.|19|30|doi:10.1016/j.mencom.2009.01.012
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccry0l8
title: CCDC 713080: Experimental Crystal Structure Determination

description: Related Article: T.Mutig, E.Kemnitz, S.I.Troyanov|2009|Mendeleev Commun.|19|30|doi:10.1016/j.mencom.2009.01.012
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccry0m9
title: CCDC 713081: Experimental Crystal Structure Determination

description: Related Article: S.N.Dmitrieva, N.I.Sidorenko, A.I.Vedernikov, N.A.Kurchavov, L.G.Kuzmina, T.M.Buslaeva, S.S.Basok, A.K.Buryak, J.A.K.Howard, S.P.Gromov|2009|Mendeleev Commun.|19|21|doi:10.1016/j.mencom.2009.01.009
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccry0nb
title: CCDC 713082: Experimental Crystal Structure Determination

description: Related Article: S.N.Dmitrieva, N.I.Sidorenko, A.I.Vedernikov, N.A.Kurchavov, L.G.Kuzmina, T.M.Buslaeva, S.S.Basok, A.K.Buryak, J.A.K.Howard, S.P.Gromov|2009|Mendeleev Commun.|19|21|doi:10.1016/j.mencom.2009.01.009
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccr0k6h
title: CCDC 685726: Experimental Crystal Structure Determination

description: Related Article: R.G.Kostyanovsky, K.A.Lyssenko, O.N.Krutius, V.R.Kostyanovsky|2009|Mendeleev Commun.|19|19|doi:10.1016/j.mencom.2009.01.008
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.jjxvnj
title: Occurrence Download

description: A dataset containing 296717 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Fiji",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 296717 records from 461 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039956-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccryclm
title: CCDC 713421: Experimental Crystal Structure Determination

description: Related Article: R.G.Kostyanovsky, K.A.Lyssenko, O.N.Krutius, V.R.Kostyanovsky|2009|Mendeleev Commun.|19|19|doi:10.1016/j.mencom.2009.01.008
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccryv9t
title: CCDC 713877: Experimental Crystal Structure Determination

description: Related Article: I.S.Bushmarinov, M.Yu.Antipin, V.R.Akhmetova, G.R.Nadyrgulova, K.A.Lyssenko|2009|Mendeleev Commun.|19|14|doi:10.1016/j.mencom.2009.01.006
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.