cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive136153.20211221.6
title: Pseudomonas putida

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136154.20211221.6
title: Pseudomonas putida

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136155.20211221.6
title: Pseudomonas putida

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136156.20211221.6
title: Enterococcus mundtii

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136157.20211221.6
title: Myroides odoratimimus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136158.20211221.6
title: Klebsiella pneumoniae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136159.20211221.6
title: Moellerella wisconsensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136160.20211221.6
title: Myroides odoratimimus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136161.20211221.6
title: Klebsiella pneumoniae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136162.20211221.6
title: Myroides odoratimimus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136163.20211221.6
title: Klebsiella pneumoniae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136164.20211221.6
title: Chryseobacterium indologenes

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136165.20211221.6
title: Klebsiella pneumoniae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136166.20211221.6
title: Empedobacter brevis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136167.20211221.6
title: Empedobacter brevis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136168.20211221.6
title: Chryseobacterium gleum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136169.20211221.6
title: Sphingobacterium multivorum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136170.20211221.6
title: Bacillus licheniformis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136171.20211221.6
title: Sphingobacterium spiritivorum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136172.20211221.6
title: Chryseobacterium indologenes

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136173.20211221.6
title: Paenibacillus polymyxa

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136174.20211221.6
title: Paenibacillus polymyxa

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136175.20211221.6
title: Klebsiella pneumoniae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136176.20211221.6
title: Klebsiella pneumoniae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136177.20211221.6
title: Citrobacter sedlakii

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136178.20211221.6
title: Trueperella bernardiae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136179.20211221.6
title: Klebsiella pneumoniae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136180.20211221.6
title: Vibrio vulnificus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136181.20211221.6
title: Pseudomonas aeruginosa

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136182.20211221.6
title: Klebsiella pneumoniae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136183.20211221.6
title: Aliivibrio logei

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136184.20211221.6
title: Leuconostoc citreum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136185.20211221.6
title: Listeria grayi

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136186.20211221.6
title: Klebsiella pneumoniae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136187.20211221.6
title: Klebsiella pneumoniae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136188.20211221.6
title: Klebsiella pneumoniae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136189.20211221.6
title: Streptococcus equinus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136190.20211221.6
title: Klebsiella pneumoniae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136191.20211221.6
title: Klebsiella pneumoniae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136192.20211221.6
title: Janthinobacterium lividum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136193.20211221.6
title: Klebsiella pneumoniae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136194.20211221.6
title: Klebsiella pneumoniae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136195.20211221.6
title: Staphylococcus aureus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.8238683
title: Data for BGL_AnoDet

description: This is the data for the "Event-level Anomaly Detection on Software logs: Role of Algorithm, Threshold, and Window Size" replication package.
The data is preprocessed and split into three categories with different window sizes to improve performance time on the anomaly detection scripts. 
Contents:

bgl_x_seq_* files contain the event keys according to the given window size
bgl_y_seq_* tells whether the sequence with the same index in bgl_x contains an anomaly (used to split between training and test sets)
bgl_y_e_seq_* files contain the raw alert messages for each event that are used for the ground truth analysis
DOI: 10.5281/zenodo.8238684
title: Data for BGL_AnoDet

description: This is the data for the "Event-level Anomaly Detection on Software logs: Role of Algorithm, Threshold, and Window Size" replication package.
The data is preprocessed and split into three categories with different window sizes to improve performance time on the anomaly detection scripts. 
Contents:

bgl_x_seq_* files contain the event keys according to the given window size
bgl_y_seq_* tells whether the sequence with the same index in bgl_x contains an anomaly (used to split between training and test sets)
bgl_y_e_seq_* files contain the raw alert messages for each event that are used for the ground truth analysis
DOI: 10.5281/zenodo.10158313
title: Data repository of the paper "Jones-vector multi-plane light conversion using adjoint-optimized metasurfaces"

description: This data repository includes the requisite data and code for deriving the primary results from the paper, "Jones-vector multi-plane light conversion using adjoint-optimized metasurfaces."
DOI: 10.5281/zenodo.10158314
title: Data repository of the paper "Jones-vector multi-plane light conversion using adjoint-optimized metasurfaces"

description: This data repository includes the requisite data and code for deriving the primary results from the paper, "Jones-vector multi-plane light conversion using adjoint-optimized metasurfaces."
DOI: 10.5281/zenodo.10158325
title: Data repository of the paper "Jones-vector multi-plane light conversion using adjoint-optimized metasurfaces"

description: This data repository includes the requisite data and code for deriving the primary results from the paper, "Jones-vector multi-plane light conversion using adjoint-optimized metasurfaces."
DOI: 10.5281/zenodo.10158300
title: crypto-detectors-evaluation-artifacts

description: The artifacts for the paper "Towards Precise Reporting of Cryptographic Misuses" contain all reported alarms from evaluated detectors, analysis results of labeled alarms, and refined CryptoGuard as well as false positive examples.
DOI: 10.5281/zenodo.10158303
title: crypto-detectors-evaluation-artifacts

description: The artifacts for the paper "Towards Precise Reporting of Cryptographic Misuses" contain all reported alarms from evaluated detectors, analysis results of labeled alarms, and refined CryptoGuard as well as false positive examples.
DOI: 10.17909/hqpv-7w15
title: Data for paper: first 13CO and C18O detection in a high-z MS galaxy

description: This is the optical or near-infrared data for the galaxies we are using in our paper.
DOI: 10.15151/esrf-es-1317774133
title: Structural Biology at EMBL Grenoble, IBS-CIBB and IAB

description: This proposal clusters crystallography and bioSAXS projects at the EMBL Grenoble, IBS-CIBB and IAB. It combines groups working on different topics with a major focus on cell signaling proteins, drug discovery, long non-coding RNAs, nucleic acid-protein complexes, and host-pathogen interactions. The proposers have long-standing experience in the use, as well as the development of beam lines for macromolecular crystallography and biological small angle X-ray scattering and have participated in successive BAG applications over the years, mostly at the ESRF but also at other synchrotrons (i.e. Soleil, Petra III, and Diamond). As Stephen Cusack (former head of EMBL Grenoble) will be retiring at the end of 2023 we propose to change the BAG responsible to Andrew McCarthy for this application round.
DOI: 10.15151/esrf-es-1317818396
title: The Israeli BAG

description: The Israeli BAG encompass most MX groups in Israel and is highly diverse and versatile in its scientific interests and convictions. In the last year some groups which are not regarded as genuine MX have been joining our BAG as users of the bioSAXS BM29 station adding to the diversity of the BAG. It is not straightforward to set descriptive summary that covers all the topics. A central theme in several BAG members could be regarded is molecular virology such as, the molecular basis for cell entry of viruses, from the Arenaviridae family of viruses, design of Vaccines against HVC by targeting HCV E2 envelope (Env) glycoprotein for neutralizing antibodies (nanobodies). The group of Rouvunski focuses on studying arthropod borne viruses (dengue, West Nile, Zika, Israel Turkey Meningoencephalitis) and recently coronaviruses (SARS-CoV-2, MERS, OC43) and their envelope proteins. On another approach we attempt to discover therapeutics against Chikungunya Virus by targeting the Clk1.
DOI: 10.15151/esrf-es-1318530786
title: Structural studies of proteins and protein complexes involved in regulation, recognition and transport

description: Our BAG is focussed around a large group of experimenters who work on a diverse range of biological and physical problems. Whilst this makes it difficult to write an overall summary of the science it makes it easy to share the beamtime very efficiently and ensure that all time granted is used to the fullest extent. The interests of the groups involved in the BAG include repair of DNA damage, chromatin assembly and organisation, metallo-protein chemistry, membrane transporter proteins, novel protein antibiotics, cell adhesion and the study of parisitic diseases with a view to vaccine development.
DOI: 10.15151/esrf-es-1338641718
title: Phase transition kinetics in spheroidal graphite irons.

description: We plan to measure in-situ liquid-solid and solid-solid phase transitions in Fe-Si-C-alloys in the proposed experiment. One objective is to determine the undercooling for γ-Fe and graphite nucleation as a function of alloy composition and inoculation by ceramic microparticles, previously evaluated in SEM and TEM (see Figure 1). Also, the kinetics of the eutectic and eutectoid transitions will be recorded at fixed cooling rates as a function of crystallographic change: amorphous to γ-Fe in the eutectic (~1150 °C), and γ-Fe to α-Fe (~800 °C) in the eutectoid.
DOI: 10.15151/esrf-es-1347513065
title: "Oxidation mechanism of copper in high voltage spinel materials for innovative Li-Ion battery"

description: The spinel material LiCu0.4Mn1.6O4 (LCMO) is a promising cathodic material for the future Li-Ion battery since it is more electrochemically stable upon cycling than LiMn2O4, the father of this class material. Moreover, the partial substitution of Mn with Cu allows enhancing the working potential of the cathode from 4V up to 5V, thanks to the oxidation/reduction reaction of Cu2+/Cu3+, and thus, the energy density of the cell. A chemical over-lithiation step allows increasing the lithium content in the material, making it suitable to be coupled with the most advanced Si-graphite anodes, which are nonetheless characterized by an irreversible consumption of Li in the first cycles. The experiment aims to perform operando XAS in a wide potential window (1.6-5.1V) to understand how the oxidation state of the Mn and Cu varies over the cycling, thus making the structural changes of the material clearer.
DOI: 10.15151/esrf-es-1347515785
title: Multi-organ research of imaging biomarkers that differentiate frontotemporal dementia from other neurodegenerative diseases.

description: Frontotemporal dementia (FTD), characterized by personality changes and executive dysfunctions, could be associated with disease-specific anatomical alterations. FTD remains difficult to diagnose and may be confused with psychiatric disorders or other neurodegenerative diseases, such as Alzheimer’s disease. Here, we propose to study the P301S mouse model of FTD to detect structural and morphological alterations at brain level at different time points, to identify specific hallmarks that can differentiate FTD from other neurodegenerative dementias. In addition, since there is evidence that gut pathological conditions are present in several diseases affecting the central nervous system, we intend to investigate the gut of the same animals, to find out whether this anatomical region is similarly involved in FTD. The finding of a link between gut dysfunction and neurodegenerative disorders could have an important impact on developing novel diagnostic and therapeutic strategies.
DOI: 10.15151/esrf-es-1347518222
title: Investigating the bifunctionality of Platinum-Iridium Electrocatalysts during Hydrogen Starvation by operando Quick-XANES

description: The objective of this proposal is to provide fundamental insides into the bifunctionality and reversibility of 2 - 4 nm Pt-Ir alloy NPs during the cell reversal event. In order to understand the mechanisms at stake, we will follow the time-resolved behaviour of Pt and Ir oxidation state within the NPs in few seconds to minutes, which corresponds to the time range of the H2 starvation. Due to the close energy range for Pt (LIII 11.564 eV) and for Ir (LIII 11.215 eV), we will only evaluate the Quick-XANES data as a function of the potential. From the Quick-XANES data, PCA and LCF analysis will be performed to monitor the potential and time dependent changes in oxidation state and ligand environment of the Ir and Pt atoms in the bimetallic NPs during HOR and OER.
DOI: 10.15151/esrf-es-1347520839
title: Operando WAXS on in-situ wetting of thick cathode by polymer electrolyte in solid state battery

description: Solid-state batteries hold promise to improve energy density without sacrificing safety. An intimate contact between solid electrolyte and cathode is key to batteries' energy density, rate capability and cyclability. However, it is challenging to form such solid-solid contact, especially when using thick cathodes for energy density. We developed a new polymer electrolyte that delivers attractive electrochemical performances even when matched with thick cathodes, and the functioning mechanism is unknown. Preliminary tests at ID31 show that the polymer only reaches half of cathode thickness in the assembled cell, but impregnates into the whole depth of the cathode after the first electrochemical charge-discharge. We therefore propose to monitor the polymer impregnation process during battery operation to discover when and how it is triggered. The in situ wetting mechanism revealed by this study may be provide insights to design polymer electrolytes and solid-state batteries.
DOI: 10.15151/esrf-es-1346948244
title: Getting to the root of mammal origins; novel insights into the evolution of mammalian metabolism from fossil teeth

description: We propose a sub-micron resolution X-ray computed tomography study of the fossil teeth and jaws of brasilodontid fossils from the Late Triassic of Brazil. Brasilodontids are the sister group to mammaliaforms (basal mammals) and inform on the evolution of traits that define mammals: endothermy (warm bloodedness), determinate growth (growth ceases after sexual maturity) and diphyodonty (only two sets of teeth). We will image growth structures in the teeth and jaws of brasilodontids to estimate their lifespan and growth patterns, as well as tooth replacement rates and patterns. These values will allow us to (1), estimate basal metabolic rate (BMR), post-natal growth rate and growth pattern in brasilodontids for the first time, critical to the debate on the evolution of endothermy; and (2) quantify dental replacement rates, crucial to understanding the acquisition of diphyodonty in mammaliaforms. This will provide vital data on the early evolution of key mammalian characters.
DOI: 10.15151/esrf-es-1346949198
title: Unravelling the origins of endothermy via semicircular canal biomechanics in non-mammaliamorph probainognathians

description: Our recently published article in Nature on the origins of endothermy sparked considerable new hope to settle one of the oldest mysteries of paleontology: the origins of mammalian warm-bloodedness (i.e., endothermy). Despite attempting to scan multiple specimens that are in the phylogenetic borderline of Mammaliamorpha, the first synapsid clade retrieved as endothermic, none of those scans did not retrieve usable results. Therefore, our previous analysis only made use of three non-mammaliamorph probainognathian species, which is admittedly unsatisfactory to resolve the debate. Hence, we propose to scan using propagation phase-contrast tomography various key specimens to extract their inner ear anatomy and internal cranial osteology. Thus, through the use of phylogenetic comparative methods, a broad extant baseline comparative sample, and biomechanical principles we can estimate the body temperature of these mammalian ancestors and accurately predict the origin of endothermy.
DOI: 10.15151/esrf-es-1363680796
title: In-situ tensile testing to reveal strain-dependent structural changes of Nephila inaurata egg sac silk

description: Studying the ultrastructure of spider silk (SPSI) to understand underlying structure function relationships is of great importance for the use of SPSI for medical applications, such as nerve guidance conduits (NGCs). NGCs will undergo strain in vivo when the body parts are moved. Therefore, we wish to explore strain-dependent structural changesthat could influence cell adhesion. By performing in-situ tensile tests on fibers exposed to different relative humidity in combination with high fast nanoXRD mapping, we will obtain detailed information on local deformations in the core and the shell layers. Additionally, fibers immersed in water prior to tensile testing will be examined. We will use egg sac SPSI, which has proven successful in cell culture and is very abundant in principle but rarely studied and poorly understood.