cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26142748.v1
title: Supplementary datasets sargassum

description: Datasets pertaining to:Carbonate chemistry of experimental aquariaVisual Health ratings of coral fragmentsHandheld probe pH dataPAM parameters for sargassum thalli
DOI: 10.3535/207-vd9-yav
title: †Dalmanella Hall & Clarke, 1892

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4ta-r70-brw
title: limestone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3yh-v13-ymr
title: Conichnus conicus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9ht-c1c-es8
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3529655.v1
title: Appendix A. Figures showing trait correlations between relative diameter growth rate and functional traits of tree species at five Neotropical forest sites.

description: Figures showing trait correlations between relative diameter growth rate and functional traits of tree species at five Neotropical forest sites.
DOI: 10.3535/24m-02l-hwt
title: Bioturbation trace fossils

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/54w-4nd-0ac
title: Bioerosional trace fossils

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25392/leicester.data.8310995.v1
title: Frequency & Predictability Effects on Eye Movements of Chinese Developing Readers

description: This is a dataset for an experiment on the effects of word frequency and the contextual predictability of words on the eye movements of developing Chinese readers.
DOI: 10.3535/ee4-9mw-xge
title: Bioturbation trace fossils

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jq0-ssy-e5j
title: Bioturbation trace fossils

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14691441.v2
title: A bio-inspired robotic climbing robot to understand kinematic and morphological determinants for an optimal climbing gait

description: <b>Abstract</b> Robotic advances for increasingly complex tasks especially in the field of search and rescue or exploration are limited for wheeled systems, therefore the study of legged locomotion for robotic applications has become more important. To successfully navigate in regions with rough terrain, a robot must not only be able to negotiate obstacles, but also climb steep inclines. Following the principles of biomimetics, we developed a modular bio-inspired climbing robot, using generic hardware components and rapid prototyping, aiming to mimic the lizards bauplan including an actuated spine, shoulders, and feet which interlock with the surface via claws. We included the ability to modify gait and hardware parameters and simultaneously collect data with the robot’s sensors on climbed distance, slip occurrence and efficiency. We first explored the speed-stability trade off and its interaction with limb swing phase dynamics, finding a sigmoidal pattern of limb movement resulted in the greatest distance travelled. By modifying wrist orientation, we found two optima for both speed and stability, suggesting multiple stable configurations. We varied spine and limb range of motion, again showing two possible optimum configurations, and finally varied the centre of pro- and retraction on climbing performance, showing an advantage for protracted limbs during the stride. We then stacked optimal regions of performance and show that combining optimal dynamic patterns with either foot angles or ROM configurations have the greatest performance, but further optima stacking resulted in a decrease in performance, suggesting complex interactions between kinematic parameters. The search of optimal parameter configurations might not only be beneficial to improve robotic in-field operations but may also further the study of the locomotive evolution of climbing of animals, like lizards or insects.
DOI: 10.6084/m9.figshare.25053641.v1
title: WaSSI Model Output

description: WaSSI model output for Germany: water yield (Q), evapotranspiration (ET), ecosystem productivity (GPP), carbon sequestration (NEP) and soil moisture datasets.
DOI: 10.6084/m9.figshare.28463360.v2
title: All original data and included literature

description: Includes: DOI/RCT numbers for all original data and literature
DOI: 10.6084/m9.figshare.9826112.v1
title: hashtagged English tweet collection filtered from Web Archive's downloads 26.03.2013-24.05.2017

description: The 2.1GB .tar.gz file contains a 6.6GB (uncompressed) .txt file with <b>346'613'181</b> rows, each row of which is a tweet ID.This dataset is distilled from the The Internet Archive’s downloaded Twitter “Spitzer” stream (https://archive.org/details/twitterstream) by filtering the English tweets containing at least a single hashtag.<br><br><br>This collection has periods when there were no tweets downloaded due to technical issues on the Web Archive's servers. These periods are 2014.01.01 - 2014.02.05, 2015.01.01 - 2015.03.22, 2015.11.16 - 2015.11.17, 2015.11.22 - 2015.11.30, 2015.12.06 - 2015.12.15, 2016.02.10 - 2016.02.14, 2016.02.27 - 2016.03.16.<br><br><br>Hydrate the tweet ids with Twarc (https://github.com/edsu/twarc) and write to a file. You will need to provide Twarc with a set of Twitter API keys.<br><i>twarc.py --hydrate tweet_ids.txt &gt; tweets.json</i><br>It is probably not a good idea to hydrate all the tweets in one go, and may be better to split the file into chunks and hydrate the tweets chunk-by-chunk.
DOI: 10.3535/rwg-rd3-gaz
title: †Volborthella tenuis Schmidt, 1888

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tv3-yr9-x96
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28330634.v1
title: <b>GIS-Based Multi-Criteria Decision Analysis for solar EVs (Electric Vehicles)</b> <b>and mobile app data</b>

description: <b>GIS-Based Multi-Criteria Decision Analysis for solar EVs (Electric Vehicles)</b> <b>and mobile app data</b>
DOI: 10.6084/m9.figshare.c.3719803_d7.v1
title: Additional file 7: of A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank

description: Fragments of failed NMR-STAR 3.1 files for PyStarLib. (TXT 149 kb)
DOI: 10.25573/data.22798616.v1
title: Chapter 23 - Drought resistance of tropical tree seedlings - Appendix Supplementary Table S1 - Timeline and comprehensive reference list of seedling drought studies conducted in the Barro Colorado Nature Monument.

description: Timeline and a comprehensive reference list of studies addressing aspects of seedling drought resistance in the Barro Colorado Nature Monument (BCNM) and in Central Panama. The document is presented in two formats. A pdf format enables reading the document. A comma-delimited text format enable extracting references and the summary data presented.The source reference follows: Engelbrecht, B. M. J. 2024. Chapter 23 - Drought Resistance of Tropical Tree Seedlings. In <i>The First 100 Years of Research on Barro Colorado: Plant and Ecosystem Science</i>, ed. H. C. Muller-Landau and S. J. Wright: Smithsonian Institution Scholarly Press).<br>
DOI: 10.3535/9sa-vrj-5cc
title: †Dianulites petropolitanus Dybowski, 1877 ()

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1136081_d271
title: Ex14R58 DAPI-6 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.25479535.v1
title: NCBI <i>Burkholderia Pseudomallei</i> complete genomes as of June 2023

description: NCBI <i>Burkholderia Pseudomallei</i> complete genomes as of June 2023 used for generation of the phylogenetic tree published in Figshare https://figshare.com/search?q=10.6084/m9.figshare.24961800
DOI: 10.6084/m9.figshare.3543896.v1
title: Appendix A. Inference for species–site group association indices.

description: Inference for species–site group association indices.
DOI: 10.6084/m9.figshare.9981704.v1
title: X,Y of the trajectories

description: <b>Coordinates of the trajectories of the 496 isolated ants<br></b><b>Column 1</b>: id of the experiment<b>Column 2</b>: time (s)<br><b>Column 3</b>: x<br><b>Column 4</b>: y<br><br>
DOI: 10.17632/94b9879wts
title: Data for: Political Connections, Political Cycles and Abnormal Returns: Evidence from Iran

description: This database is for Political Connections, Political Cycles and Abnormal Returns: Evidence from Iran.
DOI: 10.3535/009-4fn-gnv
title: †Phymatopleuridae Batten, 1956

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sy9-cy4-tsg
title: †Endoceras J. Hall, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3545330.v1
title: 290 Genomes from the Mediterranean Sea: Supplemental Data

description: A series of supplemental files for the tentatively titled "Ongoing Effort to Generate Metagenome-assembled Genomes from the <i>Tara Oceans</i> Dataset: 290 Genomes from the Mediterranean Sea" by Benjamin Tully, Elaina Graham, Rohan Sachdeva, and John Heidelberg at the University of Southern California. Data files include, the ribosomal marker HMM profiles, reference genome markers, high quality genome markers, final concatenated MUSCLE alignment, FastTree Newick file, contig read count data, relative abundance matrix for genomes from all samples, low completion bins, and contigs without a bin
DOI: 10.6084/m9.figshare.4910081.v1
title: Mycorrhizae and plant metal uptake

description: File “Dietterich et al myco-metal data for figshare 170521.csv” contains data on plant and soil metal concentrations and plant root colonization by arbuscular mycorrhizal fungi (AMF). Samples were collected in 2012 in portions of the Palmerton Zinc Superfund Site (Palmerton, PA, USA) owned and managed by the Lehigh Gap Nature or the National Park Service (Dietterich et al. <i>in press</i>). File “Dietterich et al myco-metal metadata for figshare 170521.csv” contains definitions of column headings for the above dataset. Reference: Dietterich, L. H., Gonneau, C. and Casper, B. B. <i>in press</i>. Arbuscular mycorrhizal colonization has little consequence for plant heavy metal uptake in contaminated field soils. <i>Ecological Applications</i> doi:10.1002/eap.1573
DOI: 10.3535/9jf-4s3-0y2
title: Planolites isp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dye-wtx-9rz
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/ygx3fbr7rc
title: "Optimization Based Data Enrichment Using Stochastic Dynamical System Models" Monte Carlo Dataset

description: Data used for material presented in manuscript "Optimization Based Data Enrichment Using Stochastic Dynamical System Models".

Noisy trajectories were simulated and analyzed using the methods presented in the above work. Results were described in the manuscript. Data is provided for easy use in MATLAB.
DOI: 10.3535/1fk-97v-9p3
title: Favosites sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/2sh-nzl-l4n
title: Hyolithes vomer Holm

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28551893.v1
title: S5 Date. Raw data for figure 8

description: Raw data for figure 8
DOI: 10.17632/hfrfkbmbvm
title: A LaTeX graphics routine for drawing Feynman diagrams

description: Abstract FEYNMAN is a LaTeX macropackage which allows the user to construct a versatile range of Feynman diagrams within the text of a document. Diagrams of publication quality may be drawn with relative ease and rapidity. Title of program: FEYNMAN Catalogue Id: ABLR_v1_0 Nature of problem To easily draw a versatile range of Feynman diagrams within the body of the text of a LATEX document. Versions of this program held in the CPC repository in Mendeley Data ABLR_v1_0; FEYNMAN; 10.1016/0010-4655(90)90144-P This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.3535/dlc-aa4-pt6
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tzj-rb7-fde
title: Bioturbation trace fossils

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7ah-g5j-wkj
title: Bioturbation trace fossils

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8va-d9f-h8r
title: Ptychopyge planilimbata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/3vxnnzkxyk
title: Al-Mn-Cr

description: Synergistic factors for enhanced high-temperature strength of Al-Mn-Cr heat-resistant alloy fabricated using laser-based powder bed fusion
DOI: 10.17632/kcws572t6j
title: Data for: Market Dynamics: On Directional Information Derived from (Time, Execution Price, Shares Traded) Transaction Sequences

description: This is the software to accompany the paper "Market Dynamics: On Directional Information Derived from (Time, Execution Price, Shares Traded) Transaction Sequences"
DOI: 10.3535/l98-m4q-517
title: †Graptodictya Ulrich, 1882

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/v53-dbq-grn
title: †Hormotoma Salter, 1859

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27229617.v1
title: Evolutionary Origins of Temporal Discounting: Modeling How Time and Uncertainty Constrain Optimal Decision-Making Strategies Across Taxa

description: A modeling simulation for the 2-peak problem, with varying distance, presence, and height of a more distant peak.
DOI: 10.6084/m9.figshare.28429574.v1
title: PopPIPE subcluster results (S. pnuemoniae)

description: Results of running the PopPIPE pipeline (https://github.com/bacpop/PopPIPE) on the SPARC <i>Streptococcus pneumoniae </i>dataset (https://www.nature.com/articles/sdata201558).sparc_tree.nwk. Originally published tree.full_tree.nwk. Output PopPIPE tree.all_clusters.txt. Subclusters from PopPIPE.microreact.json. Visualisation result, can be loaded into Microreact.mandrake_embedding.dot. Accessory clustering result (also included in microreact.json).sparc_subclusters.tar.bz2. Most output files from running all analysis steps. Some temporary files (.skf, map_variants.aln, transphylo_results.rds, gubbins.branch_base_reconstruction.embl) are excluded due to their size.
DOI: 10.3535/53y-hk7-mjb
title: Illaenus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z8c-d3s-eq4
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mrv-9vc-kf0
title: Bioturbation trace fossils

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28518173.v1
title: Three Decades of Land Cover Changes Shifted Environment-driven Greening towards Browning in Coastal China

description: Dataset and MATLAB code related to the publication of "Three Decades of Land Cover Changes Shifted Environment-driven Greening towards Browning in Coastal China". If you have a question please contact with: lyg9459@stu.ouc.edu.cn
DOI: 10.17632/8c77w67w8r
title: Optimal Redistributive Policy in Debt Constrained Economies

description: Replication files for "Optimal Redistributive Policy in Debt Constrained Economies," Journal of International Economics.
DOI: 10.17632/hvjtt2st39
title: Data for: Capital bias in the Nordic revenue cap regulation: Averch-Johnson critique revisited

description: Numerical simulations Solving the constrained profit maximization problem of the regulated firm and the corresponding unconstrained problems of the unregulated firm and the competitive firm are computationally trivial for modern mathematical programming solvers. To facilitate broader applicability of the numerical simulations reported in this paper among practitioners (including management consultants and regulators), we have set up an Excel spread sheet where the profit maximizing problems of the monopoly solved using the standard Excel solver tool. An Excel file containing the baseline scenario and the results of most alternative scenarios is attached as a supplementary file to this paper.
DOI: 10.3535/j6e-74e-sn5
title: Conularia pectinata Holm

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zs5-pjg-lcp
title: †Anolotichia Ulrich, 1890

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12808307.v1
title: Metadata record for: High-density surface electromyography signals during isometric contractions of elbow muscles of healthy humans

description: This dataset contains key characteristics about the data described in the Data Descriptor High-density surface electromyography signals during isometric contractions of elbow muscles of healthy humans. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.22108892.v1
title: data

description: The data of "Short Term Effect of Ivermectin on the Bacterial Microbiota from Fecal Samples in Chinchillas (<em>Chinchilla lanigera</em>)"
DOI: 10.6084/m9.figshare.23620521.v5
title: GL4U 2023 CSULA Amplicon Bootcamp materials

description: Materials for the NASA GeneLab GL4U 2023 CSULA Amplicon Sequencing Bootcamp: https://github.com/NASA/GeneLab-Training/wiki/
DOI: 10.17632/3gmvy3bcmk
title: Immune cell topography predicts response to PD-1 blockade in cutaneous T cell lymphoma

description: Cutaneous T cell lymphomas (CTCL) are rare but aggressive cancers without effective treatments. While a subset of patients derive benefit from PD-1 blockade, there is a critically unmet need for predictive biomarkers of response. Herein, we perform CODEX multiplexed tissue imaging and RNA sequencing on 70 tumor regions from 14 advanced CTCL patients enrolled in a pembrolizumab clinical trial. We find no differences in the frequencies of immune or tumor cells between responders and non-responders. Instead, we identify topographical differences between effector PD-1+ CD4+ T cells, tumor cells, and immunosuppressive Tregs, from which we derive a spatial biomarker, termed the SpatialScore, that correlates strongly with pembrolizumab response in CTCL. The SpatialScore coincides with differences in the functional immune state of the tumor microenvironment, T cell function, and tumor cell-specific chemokine recruitment and was validated using a simplified, clinically accessible tissue imaging platform. Collectively, these results provide a paradigm for investigating the spatial balance of effector and suppressive T cell activity and broadly leveraging this biomarker approach to inform the clinical use of immunotherapies.  

All data frames are derived from studies on the FFPE tissue microarray of CTCL skin biopsies from patients treated with pembrolizumab:  
- Raw_df_CODEX.csv contains marker expression profiles, cell types annotations, X/Y cell coordinates, and cellular neighborhood assignments for all segmented single-cells identified by CODEX. 
- Raw_df_CODEX_cell_dist.csv contains X/Y cell coordinates and minimal distances between the cell-types obtained with CODEX. 
- Raw_df_CSx_tumor.txt contains the gene expression of CIBERSORTx-resolved tumor cell genes per tissue microarray spot (reference TMA_key.xlsx).
- Raw_df_RNAseq.csv contains the raw counts of aligned transcripts for every gene in the transcriptome per tissue microarray spot (reference TMA_key.xlsx).
- TMA_key.xlsx contains the patient ID, tissue microarray spot number, patient treatment group, and corresponding RNAseq label. 
- Raw_df_Vectra_cell_dist.csv contains X/Y cell coordinates and minimal distances between cell-types obtained with Vectra.
DOI: 10.3535/3ln-n91-tqf
title: †Nicholsonella Ulrich, 1890

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8lh-3g5-yjb
title: Palaeohalysites sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fyl-adb-mxb
title: †Obolus apollinis Eichwald, 1829

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vd2-12l-0pa
title: †Archinacella melissa (Billings, 1865)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25952734.v1
title: 20240602_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.17632/49syjnxzx2
title: Multi-Phase and Parallelized SPH Solver v5.1.2c

description: This data shows the codes of Multi-Phase and Parallelized SPH Solver.
DOI: 10.3535/t60-vas-x4d
title: †Endoceras J. Hall, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zah-cfn-dmt
title: †Siphonotreta Verneuil, 1845

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16713784.v1
title: ONLINE DATA SUPPLEMENT 1

description: ONLINE DATA SUPPLEMENT