cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17608/k6.auckland.13212608.v1
title: Example flicker waveforms Dell U2415b

description: For details, see file "Example flicker waveforms EIZO CG247X".<br>
DOI: 10.17608/k6.auckland.13212608
title: Example flicker waveforms Dell U2415b

description: For details, see file "Example flicker waveforms EIZO CG247X".<br>
DOI: 10.17608/k6.auckland.13213436
title: Mean-modulated flicker response times EIZO CG247X

description: Data for Figure 7 of the manuscript. Data are organized as 2 blocks of 10 rows each. The upper block is rise times. There are 5 columns, each pertaining to a different contrast. Each column comprises 10 repeated measures. Unit of measure is ms. The lower block is as above, but fall times.<br>
DOI: 10.17608/k6.auckland.13213436.v1
title: Mean-modulated flicker response times EIZO CG247X

description: Data for Figure 7 of the manuscript. Data are organized as 2 blocks of 10 rows each. The upper block is rise times. There are 5 columns, each pertaining to a different contrast. Each column comprises 10 repeated measures. Unit of measure is ms. The lower block is as above, but fall times.<br>
DOI: 10.17608/k6.auckland.13213442
title: Mean-modulated flicker response times Dell U2415b

description: For details, see file "Mean-modulated flicker response times EIZO CG247X".<br>
DOI: 10.17608/k6.auckland.13213442.v1
title: Mean-modulated flicker response times Dell U2415b

description: For details, see file "Mean-modulated flicker response times EIZO CG247X".<br>
DOI: 10.17608/k6.auckland.13213307
title: Example flicker waveforms EIZO CG247X

description: These data are example waveforms like those plotted in Figure 6 of the manuscript. Each of the five columns is a time series. Contrast increases from column 1 to 5. Waveform duration is 0.5 s. Sample rate was 15360 Hz. Unit of measure is mV. <br><br><br><br><br>
DOI: 10.17608/k6.auckland.13213307.v1
title: Example flicker waveforms EIZO CG247X

description: These data are example waveforms like those plotted in Figure 6 of the manuscript. Each of the five columns is a time series. Contrast increases from column 1 to 5. Waveform duration is 0.5 s. Sample rate was 15360 Hz. Unit of measure is mV. <br><br><br><br><br>
DOI: 10.25390/caryinstitute.13622933
title: Blacklegged tick population synchrony between oak forest and non-oak forest

description: Abstract:1. Fluctuations in abundance of blacklegged ticks in space and time are well-documented, but the extent to which populations fluctuate synchronously across habitat types is poorly understood. In oak forests, blacklegged tick density depends on small mammal abundance, which is in turn driven by fluctuations in acorn production. It is currently unknown whether fluctuations in tick abundance in oak forest, long understood to depend largely on masting events, are shared with nearby non-oak forest. 2. In this study, we analyzed 22 years of tick population data from nine forest plots in southeastern New York in order to compare fluctuations of nymphal and larval blacklegged tick populations in oak-dominant forests and non-oak forests. 3. We found that population peak densities of nymphal ticks were strongly synchronous in oak and non-oak forests among years and that larval population dynamics were weakly synchronous between these two forest types. 4. Our results suggest that drivers of immature tick density in oak-dominant forest, including climatic factors and mast-driven host dynamics, may also influence tick population fluctuations in the surrounding landscape.Methods:Tick collection was conducted at all grids from 1995 to 2016. Ticks were collected from each grid by drag sampling using a 1m<sup>2 </sup>white corduroy drag cloth (Ostfeld et al., 1996). Ticks were identified by life stage, counted, and removed from the grid. Due to differences in grid layout, ticks were removed every 30m on the oak-dominant grids (450m<sup>2</sup> total) and every 20m on the non-oak grids (400m<sup>2</sup> total). Collection occurred approximately once every three weeks from April to November. <br>
DOI: 10.25390/caryinstitute.13622933.v1
title: Blacklegged tick population synchrony between oak forest and non-oak forest

description: Abstract:1. Fluctuations in abundance of blacklegged ticks in space and time are well-documented, but the extent to which populations fluctuate synchronously across habitat types is poorly understood. In oak forests, blacklegged tick density depends on small mammal abundance, which is in turn driven by fluctuations in acorn production. It is currently unknown whether fluctuations in tick abundance in oak forest, long understood to depend largely on masting events, are shared with nearby non-oak forest. 2. In this study, we analyzed 22 years of tick population data from nine forest plots in southeastern New York in order to compare fluctuations of nymphal and larval blacklegged tick populations in oak-dominant forests and non-oak forests. 3. We found that population peak densities of nymphal ticks were strongly synchronous in oak and non-oak forests among years and that larval population dynamics were weakly synchronous between these two forest types. 4. Our results suggest that drivers of immature tick density in oak-dominant forest, including climatic factors and mast-driven host dynamics, may also influence tick population fluctuations in the surrounding landscape.Methods:Tick collection was conducted at all grids from 1995 to 2016. Ticks were collected from each grid by drag sampling using a 1m<sup>2 </sup>white corduroy drag cloth (Ostfeld et al., 1996). Ticks were identified by life stage, counted, and removed from the grid. Due to differences in grid layout, ticks were removed every 30m on the oak-dominant grids (450m<sup>2</sup> total) and every 20m on the non-oak grids (400m<sup>2</sup> total). Collection occurred approximately once every three weeks from April to November. <br>
DOI: 10.5281/zenodo.4558118
title: Reduced Order Models Chapter - N.C. Clementi PhD Thesis (repro results plots)

description: This archive contains the Jupyter notebooks needed to reproduce the figures of the Reduced Order Models Chapter - N.C. Clementi PhD Thesis. For further information direct to the README.md file.
DOI: 10.5281/zenodo.4558105
title: Reduced Order Models Chapter - N.C. Clementi PhD Thesis (problem data set)

description: Problem folders including all the input files necessary to reproduce the computations of the results related to the Reduced Order Models Chapter of N.C. Clementi PhD Thesis.
DOI: 10.5281/zenodo.4558117
title: Reduced Order Models Chapter - N.C. Clementi PhD Thesis (repro results plots)

description: This archive contains the Jupyter notebooks needed to reproduce the figures of the Reduced Order Models Chapter - N.C. Clementi PhD Thesis. For further information direct to the README.md file.
DOI: 10.5281/zenodo.4558104
title: Reduced Order Models Chapter - N.C. Clementi PhD Thesis (problem data set)

description: Problem folders including all the input files necessary to reproduce the computations of the results related to the Reduced Order Models Chapter of N.C. Clementi PhD Thesis.
DOI: 10.34943/2f1e5d11-88db-48ee-a27e-d32e9b7ab593
title: Burrard Inlet Acoustic Doppler Current Profiler 600 kHz Deployed 2019-03-28

description: The RDI Workhorse Monitor ADCP 600 kHz (SN 25471) was deployed on 2019-03-28 at Burrard Inlet. Burrard Inlet is a coastal fjord in southwestern British Columbia. This device is a Acoustic Doppler Current Profiler 600 kHz. Acoustic Doppler Current Profilers (ADCP) are hydroacoustic instruments, similar to sonars. ADCPs measure current speed and direction at multiple predetermined depths simultaneously. ADCPs use the Doppler effect of sound waves that are scattered by particles in seawater over a depth range. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 2.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.5519/qd.b79g8zwt
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (224597 records)
DOI: 10.5519/qd.1rvkrl29
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (241 records)
DOI: 10.6084/m9.figshare.12915422.v2
title: PercepCovid19OriginSocialdist.SurveyMonkey.Data.xlsx

description: Dataset from the study:<b> "Misinformation on COVID-19 origin and its relationship with perception and knowledge about social distancing: A cross-sectional study".</b><br><br><b> ABSTRACT</b><b><br></b>Despite the vast scientific evidence obtained from the genomic sequencing of COVID-19, a controversy regarding its origin has been created in the mass media. This could potentially have a long-term influence on the behavior among individuals, such as failure to comply with proposed social distancing measures, leading to a consequent rise in the morbidity and mortality rates from COVID-19 infection. Several studies have collected information about knowledge, attitudes and practices regarding COVID-19; however, very little is known about the relationship of the perceptions of the individuals regarding the origin of the virus with the knowledge and perception about social distancing. This study aimed at ascertaining this relationship. For such purpose, a web-based cross-sectional study was conducted among a sample population from five provinces of the Dominican Republic within the period of June to July of 2020. The data collection instrument exploited in the study was a self-designed questionnaire distributed throughout different social media platforms. A purposive sampling strategy was implemented and a total of 1195 respondents completed the questionnaire. The collected data was analyzed using SPSS. Descriptive statistics, stepwise multiple linear regression and one-way multivariate analysis were implemented to test the hypotheses. The level of education was significantly associated (<i>P</i> = .0.017) with individuals’ perception about the origin of COVID-19, whilst only age (<i>P</i> = .032) and education level (<i>P</i> &lt; .001) statistically significantly predicted ‘knowledge about social distancing’. Perception of COVID-19 origin was statistically significant associated (<i>P</i> = The present study has established a possible link between the ‘perception of COVID-19 origin’ and ‘the perception and knowledge about social distancing’. <br>
DOI: 10.25345/c58n5f
title: MassIVE MSV000086941 - Takayama HT24_41- Protein Extraction from Heart Valve Tissue and Digestion
title: Takayama HT24_41- Protein Extraction from Heart Valve Tissue and Digestion
DOI: 10.6084/m9.figshare.14099060
title: Modeling Contact Tracing for COVID-19 - Simulation Results

description: Data corresponding to 4 experiments involving our novel epidemiological model for contact tracing.
DOI: 10.6084/m9.figshare.14099060.v2
title: Modeling Contact Tracing for COVID-19 - Simulation Results

description: Data corresponding to 4 experiments involving our novel epidemiological model for contact tracing.
DOI: 10.6084/m9.figshare.14099060.v1
title: simulation_results.zip

description: Data corresponding to 4 experiments involving our novel epidemiological model for contact tracing.
DOI: 10.7277/zdww-8r66
title: Semiactive Control of Nonlinear Structures (NEES-2005-0021)

description: &lt;p&gt;&lt;strong&gt;Title&lt;/strong&gt;: Semiactive Control of Nonlinear Structures (NEES-2005-0021)&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Year Of Curation: &lt;/strong&gt;2015&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Description: &lt;/strong&gt;This pre-NEESR project will conduct fast-hybrid testing at the CU NEES FHT facility using large-scale Magneto-Rheological fluid dampers (built by the Lord Corporation) as semiactive control devices distributed throughout a simulated structure for seismic protection.              &lt;/p&gt; &lt;p&gt;&lt;strong&gt;Award: &lt;/strong&gt;http://www.nsf.gov/awardsearch/showAward?AWD_ID=0612661&lt;/p&gt; &lt;p&gt;&lt;strong&gt;PIs &amp; CoPIs: &lt;/strong&gt;Richard Christenson&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Dates: &lt;/strong&gt;May 16, 2005 - September 30, 2007&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Organizations: &lt;/strong&gt;&lt;br /&gt; Rensselaer Polytechnic University, NY, United States&lt;br /&gt; Texas A &amp; M University, TX, United States&lt;br /&gt; University of Colorado at Boulder, CO, United States&lt;br /&gt; University of Connecticut, CT, United States&lt;br /&gt; Utah State University, UT, United States&lt;br /&gt; Washington University, MO, United States&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Facilities: &lt;/strong&gt;nonlinear structure, structural damping, real-time hybrid simulation, magneto-rheological fluid damper&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Sponsor: &lt;/strong&gt;NSF - 0612661&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Keywords: &lt;/strong&gt;&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Publications: &lt;/strong&gt;&lt;br /&gt; Yi Lin, &quot;Real-Time Hybrid Testing of an MR Damper for Response-Prediction&quot;&lt;br /&gt; Aly Mousaad Aly Sayed Ahmed, Richard Christenson, &quot;On the evaluation of the efficacy of a smart damper: a new equivalent energy-based probabilistic approach.&quot;&lt;/p&gt; &lt;nb:citations&gt;&lt;/nb:citations&gt;
DOI: 10.5281/zenodo.4558155
title: OtoMatch: Content-based Eardrum Image Retrieval using Deep Learning

description: There are three classes; Effusion (170), Normal(179), and Tube(96) of eardrum images. Simply use ten fold cross validation for testing and left out set for training and validation. 'Image Names and Labels.xlsx' file contains the labels for each image.
DOI: 10.5281/zenodo.3595566
title: OtoMatch: Content-based Eardrum Image Retrieval using Deep Learning

description: There are three classes; Effusion (170), Normal(179), and Tube(96) of eardrum images. Simply use ten fold cross validation for testing and left out set for training and validation. 'Image Names and Labels.xlsx' file contains the labels for each image.
DOI: 10.15131/shef.data.7614023
title: Autonomous Flame Detection in Videos With a Dirichlet Process Gaussian Mixture Color Model

description: Codes for the paper of 'Autonomous Flame Detection in Videos With a Dirichlet Process Gaussian Mixture Color Model' published in IEEE Transactions on Industrial Informatics.<br>The codes train a flame colour model based on DPGMM and employ it together with optical flow, sainlency analysis to detect flames in videos.
DOI: 10.15131/shef.data.7614023.v1
title: Autonomous Flame Detection in Videos With a Dirichlet Process Gaussian Mixture Color Model

description: Codes for the paper of 'Autonomous Flame Detection in Videos With a Dirichlet Process Gaussian Mixture Color Model' published in IEEE Transactions on Industrial Informatics.<br>The codes train a flame colour model based on DPGMM and employ it together with optical flow, sainlency analysis to detect flames in videos.
DOI: 10.15131/shef.data.7551068
title: Data from: Measurement of salivary adrenal-specific androgens as biomarkers of therapy control in 21-hydroxylase deficiency.

description: Introduction: Monitoring of hormonal control represents a key part in the management of congenital adrenal hyperplasia (CAH). It remains suboptimal and relies on frequent blood tests, which are traumatising in children and young persons. We aimed to establish a non-invasive test for monitoring of adrenal-specific androgens in CAH. Objective: To establish the correlation between plasma and salivary androgens in children with CAH. Patients and Methods: Patients (n=78) and matched controls (n=62) were recruited in a multicentre prospective study of children with CAH across the United Kingdom. Using liquid chromatography tandem mass spectrometry, we measured plasma and salivary concentrations for five steroid hormones: 17-hydroxyprogesterone, androstenedione, testosterone, 11-hydroxyandrostenedione and 11-ketotestosterone and established the correlation between plasma and salivary steroids to assess their usefulness in clinical practice. Results: Plasma and salivary steroid concentrations show a good correlation, with androstenedione and 11-ketotestosterone. In addition, a high correlation was found in patients with CAH when analysing subgroups based on gender and age. Clear differences can be found for all plasma and salivary steroids between patients and controls. Conclusions: We have established the close correlation between plasma and salivary concentrations of steroid hormones assessed for therapy control CAH patients. Importantly, the best correlations were found for the adrenal-derived 11oxygenatedC19 androgen 11-ketotestosterone as well as 17-hydroxyprogesterone and androstenedione, which are widely used for CAH monitoring. Thus, we believe that this novel and improved combination of salivary steroid hormones can serve as non-invasive monitoring tool in CAH providing a significant amount of additional information and will ultimately improve management and outcomes in CAH.The following files are included in the dataset (the supplementary figures and tables were revised in June 2019): 1. Supplementary figures (second revision) (1-6) 2. Supplementary tables (second revision) (1-10) 3. Supplementary information (sample collection protocols)
DOI: 10.15131/shef.data.7551068.v2
title: Data from: Measurement of salivary adrenal-specific androgens as biomarkers of therapy control in 21-hydroxylase deficiency.

description: Introduction: Monitoring of hormonal control represents a key part in the management of congenital adrenal hyperplasia (CAH). It remains suboptimal and relies on frequent blood tests, which are traumatising in children and young persons. We aimed to establish a non-invasive test for monitoring of adrenal-specific androgens in CAH. Objective: To establish the correlation between plasma and salivary androgens in children with CAH. Patients and Methods: Patients (n=78) and matched controls (n=62) were recruited in a multicentre prospective study of children with CAH across the United Kingdom. Using liquid chromatography tandem mass spectrometry, we measured plasma and salivary concentrations for five steroid hormones: 17-hydroxyprogesterone, androstenedione, testosterone, 11-hydroxyandrostenedione and 11-ketotestosterone and established the correlation between plasma and salivary steroids to assess their usefulness in clinical practice. Results: Plasma and salivary steroid concentrations show a good correlation, with androstenedione and 11-ketotestosterone. In addition, a high correlation was found in patients with CAH when analysing subgroups based on gender and age. Clear differences can be found for all plasma and salivary steroids between patients and controls. Conclusions: We have established the close correlation between plasma and salivary concentrations of steroid hormones assessed for therapy control CAH patients. Importantly, the best correlations were found for the adrenal-derived 11oxygenatedC19 androgen 11-ketotestosterone as well as 17-hydroxyprogesterone and androstenedione, which are widely used for CAH monitoring. Thus, we believe that this novel and improved combination of salivary steroid hormones can serve as non-invasive monitoring tool in CAH providing a significant amount of additional information and will ultimately improve management and outcomes in CAH.The following files are included in the dataset (the supplementary figures and tables were revised in June 2019): 1. Supplementary figures (second revision) (1-6) 2. Supplementary tables (second revision) (1-10) 3. Supplementary information (sample collection protocols)
DOI: 10.15131/shef.data.7551068.v1
title: Data from: Measurement of salivary adrenal-specific androgens as biomarkers of therapy control in 21-hydroxylase deficiency.

description: Introduction: Monitoring of hormonal control represents a key part in the management of congenital adrenal hyperplasia (CAH). It remains suboptimal and relies on frequent blood tests, which are traumatising in children and young persons. We aimed to establish a non-invasive test for monitoring of adrenal-specific androgens in CAH. Objective: To establish the correlation between plasma and salivary androgens in children with CAH. Patients and Methods: Patients (n=78) and matched controls (n=62) were recruited in a multicentre prospective study of children with CAH across the United Kingdom. Using liquid chromatography tandem mass spectrometry, we measured plasma and salivary concentrations for five steroid hormones: 17-hydroxyprogesterone, androstenedione, testosterone, 11-hydroxyandrostenedione and 11-ketotestosterone and established the correlation between plasma and salivary steroids to assess their usefulness in clinical practice. Results: Plasma and salivary steroid concentrations show a good correlation, with androstenedione and 11-ketotestosterone. In addition, a high correlation was found in patients with CAH when analysing subgroups based on gender and age. Clear differences can be found for all plasma and salivary steroids between patients and controls. Conclusions: We have established the close correlation between plasma and salivary concentrations of steroid hormones assessed for therapy control CAH patients. Importantly, the best correlations were found for the adrenal-derived 11oxygenatedC19 androgen 11-ketotestosterone as well as 17-hydroxyprogesterone and androstenedione, which are widely used for CAH monitoring. Thus, we believe that this novel and improved combination of salivary steroid hormones can serve as non-invasive monitoring tool in CAH providing a significant amount of additional information and will ultimately improve management and outcomes in CAH.The following files are included in the dataset (the supplementary figures and tables were revised in April 2019): 1. Supplementary figures (revised) (1-5) 2. Supplementary tables (revised) (1-10) 3. Supplementary information (sample collection protocols)
DOI: 10.6084/m9.figshare.13150955
title: Supplemental Materials for: Prediction of evening fatigue severity in outpatients receiving chemotherapy: less may be more

description: These are the supplementary files for the publication.
DOI: 10.6084/m9.figshare.13150955.v1
title: Supplemental Materials for: Prediction of evening fatigue severity in outpatients receiving chemotherapy: less may be more

description: These are the supplementary files for the publication.
DOI: 10.6084/m9.figshare.14099180
title: 3D printed parts

description: Enucleation holder for holding clides verically on a 50ml tube and centifugation.Agarose confiner designed to push 16-mm diameter agarose gels on glass fluorodishes, to fix cells under agarose confinement.<br>
DOI: 10.6084/m9.figshare.14099180.v1
title: 3D printed parts

description: Enucleation holder for holding clides verically on a 50ml tube and centifugation.Agarose confiner designed to push 16-mm diameter agarose gels on glass fluorodishes, to fix cells under agarose confinement.<br>
DOI: 10.6084/m9.figshare.14075372.v8
title: RNAseq_Goodwin et al_Feb2021

description: RNAseq data supporting the Goodwin et al manuscript