cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0139402.10fu
title: SH0139402.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive151666.20230509.8.1
title: Corynebacterium capitovis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive151666.20251217.10
title: Corynebacterium capitovis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0139403.10fu
title: SH0139403.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive151667.20241212.9.2
title: Arcanobacterium phocae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive151667.20251217.10
title: Arcanobacterium phocae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0139404.10fu
title: SH0139404.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive151668.20241212.9.2
title: Veillonella parvula

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive151668.20251217.10
title: Veillonella parvula

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0139405.10fu
title: SH0139405.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.94cat9
title: Occurrence Download

description: A dataset containing 1166 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rosa carolina L.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 1166 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0167334-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aunyov
title: Occurrence Download

description: A dataset containing 13870077 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Brazil"
 ]
}

 The dataset includes 13870077 records from 2462 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021974-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15091661
title: [DATA] Southern Hemisphere Surface Warming Drives Southwestern U.S. Precipitation According to A.I.-informed Climate Model Simulations

description: Keras file is the saved CNN model. Pkl file is the saved training/validation loss.
DOI: 10.5281/zenodo.15091662
title: [DATA] Southern Hemisphere Surface Warming Drives Southwestern U.S. Precipitation According to A.I.-informed Climate Model Simulations

description: Keras file is the saved CNN model. Pkl file is the saved training/validation loss.
DOI: 10.15468/dl.8hn5y5
title: Occurrence Download

description: A dataset containing 18113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-78.22459 4.6537,-73.50127 4.6537,-73.50127 8.7244,-78.22459 8.7244,-78.22459 4.6537))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cyathea J.E.Sm."
 ]
}

 The dataset includes 18113 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005762-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rs7x2d
title: Occurrence Download

description: A dataset containing 2125199 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-1.56286 43.63066,-3.12151 43.64059,-3.46746 43.2391,-3.61139 42.20127,-2.86328 41.72017,-2.22016 41.61377,-1.28623 41.79347,-0.58347 42.62695,-0.30885 42.84264,-0.34443 43.4108,-1.06863 43.61106,-1.56286 43.63066))",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 2125199 records from 513 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005758-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nhnr2s
title: Occurrence Download

description: A dataset containing 39798 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Malaysia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bucerotiformes",
 "Year 2015-2025"
 ]
}

 The dataset includes 39798 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005763-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28454639
title: Porcine EJV - Supplementary Data

description: Placement of intravenous catheters is a vital part of medical care for all animals, and in porcine patients it is difficult due to layers of fat, making veins difficult to locate. Ultrasound is an ideal tool to overcome this challenge, but there is minimal data on the ideal location for placement of the catheter. This study evaluates factors that are important for catheter placement, including the needle angle in relation to the jugular vein and the vein size at the two locations. We hypothesized based on anatomical studies that the location closer to the chest (caudal) would have favorable characteristics for success, including a smaller angle between the vein and the needle, and a larger diameter of the vein. Analysis of measurements showed that the angle for the path of the needle was smaller at the caudal location, and the distance for the needle to travel to the vein was shorter. Vein diameter was found to be larger at the caudal location as well, although the effect was less pronounced. Our hypothesis that the caudal location has a smaller needle angle and larger vessel diameter was confirmed, supporting a potential benefit for caudal location placement.<br>
DOI: 10.15468/dl.pr4gu8
title: Occurrence Download

description: A dataset containing 231 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ictalurus balsanus (Jordan & Snyder, 1899)"
 ]
}

 The dataset includes 231 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005764-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.paa5tb
title: Occurrence Download

description: A dataset containing 853 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mytilus chilensis Hupé, 1854",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 853 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005765-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13795774
title: Cognition-Associated Protein Structural Changes in a Rat Model of Aging are Related to Reduced Refolding Capacity – Peptide Quantifications

description: Cognitive decline during aging represents a major societal burden, causing both personal and economic hardship in an increasingly aging population. There are a few well-known proteins that can misfold and aggregate in an age-dependent manner, such as amyloid β and α-synuclein. However, many studies have found that the proteostasis network, which functions to keep proteins properly folded, is impaired with age, suggesting that there may be many more proteins that incur structural alterations with age. Here, we used limited-proteolysis mass spectrometry (LiP-MS), a structural proteomic method, to globally interrogate protein conformational changes in a rat model of cognitive aging. Specifically, we compared soluble hippocampal proteins from aged rats with preserved cognition to those from aged rats with impaired cognition. We identified several hundred proteins as having undergone cognition-associated structural changes (CASCs). We report that CASC proteins are substantially more likely to be nonrefoldable than non-CASC proteins, meaning they typically cannot spontaneously refold to their native conformations after being chemically denatured. The potentially cofounding variable of post-translational modifications is systematically addressed, and we find that oxidation and phosphorylation cannot significantly explain the limited proteolysis signal. These findings suggest that noncovalent, conformational alterations may be general features in cognitive decline, and more broadly, that proteins need not form amyloids for their misfolded states to be relevant to age-related deterioration in cognitive abilities.

This deposition provides processed peptide quantifications for all LC-MS/MS proteomics experiments conducted for this study.

Raw proteomics data are available on PRIDE with the dataset identifiers PXD053728 and PXD052770
DOI: 10.5281/zenodo.13795773
title: Cognition-Associated Protein Structural Changes in a Rat Model of Aging are Related to Reduced Refolding Capacity – Peptide Quantifications

description: Cognitive decline during aging represents a major societal burden, causing both personal and economic hardship in an increasingly aging population. There are a few well-known proteins that can misfold and aggregate in an age-dependent manner, such as amyloid β and α-synuclein. However, many studies have found that the proteostasis network, which functions to keep proteins properly folded, is impaired with age, suggesting that there may be many more proteins that incur structural alterations with age. Here, we used limited-proteolysis mass spectrometry (LiP-MS), a structural proteomic method, to globally interrogate protein conformational changes in a rat model of cognitive aging. Specifically, we compared soluble hippocampal proteins from aged rats with preserved cognition to those from aged rats with impaired cognition. We identified several hundred proteins as having undergone cognition-associated structural changes (CASCs). We report that CASC proteins are substantially more likely to be nonrefoldable than non-CASC proteins, meaning they typically cannot spontaneously refold to their native conformations after being chemically denatured. The potentially cofounding variable of post-translational modifications is systematically addressed, and we find that oxidation and phosphorylation cannot significantly explain the limited proteolysis signal. These findings suggest that noncovalent, conformational alterations may be general features in cognitive decline, and more broadly, that proteins need not form amyloids for their misfolded states to be relevant to age-related deterioration in cognitive abilities.

This deposition provides processed peptide quantifications for all LC-MS/MS proteomics experiments conducted for this study.
DOI: 10.5281/zenodo.15103402
title: Cognition-Associated Protein Structural Changes in a Rat Model of Aging are Related to Reduced Refolding Capacity – Peptide Quantifications

description: Cognitive decline during aging represents a major societal burden, causing both personal and economic hardship in an increasingly aging population. There are a few well-known proteins that can misfold and aggregate in an age-dependent manner, such as amyloid β and α-synuclein. However, many studies have found that the proteostasis network, which functions to keep proteins properly folded, is impaired with age, suggesting that there may be many more proteins that incur structural alterations with age. Here, we used limited-proteolysis mass spectrometry (LiP-MS), a structural proteomic method, to globally interrogate protein conformational changes in a rat model of cognitive aging. Specifically, we compared soluble hippocampal proteins from aged rats with preserved cognition to those from aged rats with impaired cognition. We identified several hundred proteins as having undergone cognition-associated structural changes (CASCs). We report that CASC proteins are substantially more likely to be nonrefoldable than non-CASC proteins, meaning they typically cannot spontaneously refold to their native conformations after being chemically denatured. The potentially cofounding variable of post-translational modifications is systematically addressed, and we find that oxidation and phosphorylation cannot significantly explain the limited proteolysis signal. These findings suggest that noncovalent, conformational alterations may be general features in cognitive decline, and more broadly, that proteins need not form amyloids for their misfolded states to be relevant to age-related deterioration in cognitive abilities.

This deposition provides processed peptide quantifications for all LC-MS/MS proteomics experiments conducted for this study.
DOI: 10.15468/dl.swyduy
title: Occurrence Download

description: A dataset containing 13510 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Specimen, Material citation, Occurrence evidence, Machine Observation)",
 "Geometry POLYGON((-72.70208 -36.42755,-72.85706 -36.38159,-73.01203 -36.42098,-73.10991 -36.51282,-73.25673 -36.71578,-73.19148 -36.91168,-73.24858 -37.1331,-73.44434 -37.1331,-73.66456 -37.12659,-73.72166 -37.289,-73.67272 -37.45753,-73.80323 -37.59984,-73.72166 -37.69026,-73.5259 -37.6709,-73.41987 -37.42515,-73.24858 -37.3409,-73.07729 -37.1916,-73.0365 -36.96383,-72.92231 -36.81379,-72.85706 -36.63073,-72.70208 -36.42755))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 13510 records from 159 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005766-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.85usvk
title: Occurrence Download

description: A dataset containing 522 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "CoordinateUncertaintyInMeters 500.0-1000000.0",
 "Geometry POLYGON((-98.16043 -13.97347,53.16043 -13.97347,53.16043 90.00000,-98.16043 90.00000,-98.16043 -13.97347))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Stachys ocymastrum (L.) Briq.",
 "Year 1980-2010"
 ]
}

 The dataset includes 522 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005767-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15102620
title: Simulated and processed data input for publication figures generated by the spatialmatch R package
DOI: 10.5281/zenodo.15102621
title: Simulated and processed data input for publication figures generated by the spatialmatch R package
DOI: 10.48567/tdkm-kk96
title: D-47 Automatic Weather Station, 2006 Reader format three-hour observational data.
DOI: 10.21227/cg3c-zv87
title: Sylheti Nagri Text-to-Speech Synthesis

description: This research introduces a novel text-to-speech (TTS) system for the endangered Sylheti Nagri language, spoken primarily in the Sylhet region of Bangladesh. The Sylheti Nagri script, dating back to the 1500s, is largely obsolete today, replaced by the Bangla script. To aid in its preservation, we present the Sylheti Nagri TTS Corpus, a dataset containing over 15 hours of audio recordings, including 8,268 sentences spoken by a professional voice artist. Using the Variational Inference Text-to-Speech (VITS) framework, our model achieves a Mean Opinion Score (MOS) of 3.76, providing a crucial resource for preserving the language's oral heritage.
DOI: 10.48567/p7vr-am49
title: D-47 Automatic Weather Station, 2007 Reader format three-hour observational data.
DOI: 10.48567/hny7-ac88
title: D-47 Automatic Weather Station, 2008 Reader format three-hour observational data.
DOI: 10.6084/m9.figshare.28678172
title: McCoin Donepezil Supplemental by Sex

description: Sex-dependent impacts of DON.
DOI: 10.15468/dl.j8c7uv
title: Occurrence Download

description: A dataset containing 756 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "CoordinateUncertaintyInMeters 500.0-1000000.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Stachys heraclea All.",
 "Year 1980-2010"
 ]
}

 The dataset includes 756 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005768-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14055361
title: Adaptive Rational Interpolation and Higher-order SVD for Low-rank Tensor Approximation in Structural Dynamics Simulations

description: Vibroacoustic Data Compression and Interpolation

This is the code that accompanies the paper



Adaptive Rational Interpolation and Higher-order SVD for Low-rank Tensor Approximation in Structural Dynamics Simulations


which we (Jan Heiland, Victor Gosea, Ulrich Römer, Davide Pradovera, Harikrishnan Sreekumar, Sabine Langer) submitted for presentation at the ECC-2025.

See the README.md for information and instruction to reproduce the results of the paper.
DOI: 10.5281/zenodo.14055362
title: Adaptive Rational Interpolation and Higher-order SVD for Low-rank Tensor Approximation in Structural Dynamics Simulations

description: Vibroacoustic Data Compression and Interpolation

This is the code that accompanies the paper



Adaptive Rational Interpolation and Higher-order SVD for Low-rank Tensor Approximation in Structural Dynamics Simulations


which we (Jan Heiland, Victor Gosea, Ulrich Römer, Davide Pradovera, Harikrishnan Sreekumar, Sabine Langer) submitted for presentation at the ECC-2025.

See the README.md for information and instruction to reproduce the results of the paper.
DOI: 10.15468/dl.p4zbrd
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is ESP.8_1",
 "Geometry POLYGON((-51.27260 22.57969,58.27260 22.57969,58.27260 66.42031,-51.27260 66.42031,-51.27260 22.57969))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lythrum acutangulum Lag."
 ]
}

 The dataset includes 32 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005769-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.