cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.3mf353m
title: Data from: Phylogeography of Pulsatilla cernua (Ranunculaceae), a grassland species, in Japan

description: The genetic diversity and structure of Pulsatilla cernua, a
 continental-grassland relict, were investigated using variations in
 chloroplast DNA (cpDNA) and microsatellites of nuclear DNA. In the
 analyses of three cpDNA regions, 17 haplotypes were found in 24
 populations of P. cernua from Japan, Korea, and Russia. Although the route
 and time of migration between the continent of Asia and Japan could not be
 well resolved, the cpDNA haplotype network suggests the existence of
 several ancient lineages in Japan and a recent secondary migration from
 Japan to the continent. Microsatellite analyses did not indicate genetic
 structure among the Japanese populations, indicating the existence of gene
 flow across the distribution area until recently. These results indicate
 that the present fragmentation of P. cernua in Japan may reflect a rapid,
 recent reduction from a previously large, continuous distribution.
description: Pulsatilla cernua
 cpDNAThis data file includes
 three regions of chloroplast, trnL-trnF, trnH-psbA, and trnH-rnK of 24
 individuals of Pulsatilla cernua collected in Japan, Korea, and
 Russia.Pulsatilla_cernua_spDNA
DOI: 10.5061/dryad.69b648j
title: Data from: Genomic and transcriptomic characterization of papillary microcarcinomas with lateral neck lymph node metastases

description: Context: Most papillary microcarcinomas (PMC) are indolent and
 subclinical, however as many as 10% can present with clinically
 significant nodal metastases. Objective/Design: Characterization of the
 genomic and transcriptomic landscape of PMC presenting with or without
 clinically significant lymph node metastases. Subjects/Samples:
 Formalin-fixed paraffin-embedded PMC samples from 40 patients with lateral
 neck nodal metastases (pN1b) and 71 PMC patients with documented absence
 of nodal disease (pN0). Outcome Measure(s): To interrogate DNA alterations
 in 410 genes commonly mutated in cancer and test for differential gene
 expression using a custom NanoString panel of 248 genes selected primarily
 based on their association with tumor size and nodal disease in the
 papillary thyroid cancer TCGA project. Results: The genomic landscapes of
 PMC with or without pN1b were similar. Mutations in TERT promoter (3%) and
 TP53 (1%) were exclusive to N1b cases. Transcriptomic analysis revealed
 differential expression of 43 genes in PMCs with pN1b compared to pN0. A
 random forest machine learning-based molecular classifier developed to
 predict regional lymph node metastasis demonstrated a negative predictive
 value of 0.98 and a positive predictive value of 0.72 at a prevalence of
 10% pN1b disease. Conclusions: The genomic landscape of tumors with pN1b
 and pN0 disease was similar, whereas 43 genes selected primarily by mining
 the TCGA RNAseq data were differentially expressed. This
 bioinformatics-driven approach to the development of a custom
 transcriptomic assay provides a basis for a molecular classifier for pN1b
 risk stratification in PMC.
description: Supp Figure
 1_19.05.13Supplemental figure and
 table associated with Genomic and transcriptomic characterization of
 papillary microcarcinomas with lateral neck lymph node metastases,
 published in JCEM 2019Supplementary Table
 1_19.05.13Supplementary table to
 Genomic and transcriptomic characterization of papillary microcarcinomas
 with lateral neck lymph node metastases, published in JCEM
 2019
DOI: 10.5061/dryad.j022f80
title: Data from: Identification and characterization of Gypsophila paniculata color morphs in Sleeping Bear Dunes National Lakeshore, MI, USA

description: Gypsophila paniculata (baby’s breath) is an invasive species found
 throughout much of the northwest United States and western Canada.
 Recently, plants exhibiting a different color morphology were identified
 within the coastal dunes along eastern Lake Michigan. The common baby’s
 breath (G. paniculata) typically produces stems that are purple in color
 (purple morph), while the atypical morph has stems that are green-yellow
 (green-yellow morph). The purpose of this study was to characterize these
 newly identified morphs and determine if they are genetically distinct
 species from the common baby’s breath in order to assess whether
 alternative management strategies should be employed to control these
 populations. Methods. We sequenced two chloroplast regions, rbcL and matK,
 and one nuclear region, ITS2, from the purple morphs and green-yellow
 morphs collected from Sleeping Bear Dunes National Lakeshore, MI, USA
 (SBDNL). Sequences were aligned to reference sequences from other
 Gypsophila species obtained from the Barcode of Life (BOLD) and GenBank
 databases. We also collected seeds from wild purple morph and wild
 green-yellow morph plants in SBDNL. We grew the seeds in a common garden
 setting and characterized the proportion of green-yellow individuals
 produced from the two color morphs after five-months of growth. Results.
 Phylogenetic analyses based upon rbcL, matK, and ITS2 regions suggest that
 the two color morphs are not distinct species and they both belong to G.
 paniculata. Seeds collected from wild green-yellow morphs produced a
 significantly higher proportion of green-yellow individuals compared to
 the number produced by seeds collected from wild purple morphs. However,
 seeds collected from both color morphs produced more purple morphs than
 green-yellow morphs. Discussion. Based upon these results, we propose that
 the two color morphs are variants of G. paniculata. Given the significant
 difference in the number of green-yellow morphs produced from the seeds of
 each morph type, we also suggest that this color difference has some
 genetic basis. We propose that current management continue to treat the
 two color morphs in a similar manner in terms of removal to prevent the
 further spread of this species.
description: G. paniculata color
 morph data filesThis folder contains raw
 sequence files, fasta files for the color morphs & reference
 sequences, aligned files for MEGA, and the nexus file used to create the
 haplotype network in PopART.DryadFiles_PostRevision.zip
DOI: 10.5281/zenodo.18392270
title: Unsupervised Mobile Stroop Task Dataset and Analysis Code

description: This record contains de-identified reaction-time data from an unsupervised mobile Stroop task, along with the analysis code used in the associated manuscript. Participant identifiers were pseudonymized using salted cryptographic hashes, and absolute timestamps were replaced by elapsed time since the first trial. The archive includes raw data, a Zenodo-ready dataset used for analysis, documentation, and reproducible code.
DOI: 10.5061/dryad.p6k2cb0
title: Data from: How long do anti-predator interventions remain effective? Patterns, thresholds and uncertainty

description: Human-predator conflicts are globally widespread and effective
 interventions are essential to protect human assets from predator attacks.
 As effectiveness also has a temporal dimension, it is of importance to
 know how long interventions remain most effective and to determine time
 thresholds at which effectiveness begins to decrease. To address this, we
 conducted a systematic review of the temporal changes in effectiveness of
 non-invasive interventions against terrestrial mammalian predators,
 defining a temporal trend line of effectiveness for each published case.
 We found only 26 cases from 14 publications, mainly referring to electric
 fences (n = 7 cases) and deterrents (n = 7 cases). We found electric
 fences and calving control to remain highly effective for the longest
 time, reducing damage by 100% for periods between three months and three
 years. The effectiveness of acoustical and light deterrents, as well as
 guarding animals eroded quite fast after 1-5 months. Supplemental feeding
 was found to be counter-productive by increasing damage over time instead
 of reducing it. We stress that it is vital to make monitoring a routine
 requirement for all intervention applications and suggest to standardise
 periods of time over which monitoring can produce meaningful and
 affordable information.
description: The dataset of
 effectiveness changessupporting
 material.xls
DOI: 10.5061/dryad.4g60032
title: Data from: A telomerase with novel non-canonical roles: TERT controls cellular aggregation and tissue size in Dictyostelium

description: Telomerase, particularly its main subunit, the reverse transcriptase,
 TERT, prevents DNA erosion during eukaryotic chromosomal replication, but
 also has poorly understood non-canonical functions. Here, in the model
 social amoeba Dictyostelium discoideum, we show that the protein encoded
 by tert has telomerase-like motifs, and regulates, non-canonically,
 important developmental processes. Expression levels of wild-type (WT)
 tert were biphasic, peaking at 8 and 12 h post-starvation, aligning with
 developmental events, such as the initiation of streaming (~7 h) and mound
 formation (~10 h). In tert KO mutants, however, aggregation was delayed
 until 16 h. Large, irregular streams formed, then broke up, forming small
 mounds. The mound-size defect was not induced when a KO mutant of countin
 (a master size-regulating gene) was treated with TERT inhibitors, but
 anti-countin antibodies did rescue size in the tert KO. Although,
 conditioned medium (CM) from countin mutants failed to rescue size in the
 tert KO, tert KO CM rescued the countin KO phenotype. These and additional
 observations indicate that TERT acts upstream of smlA/countin: (i) the
 observed expression levels of smlA and countin, being respectively lower
 and higher (than WT) in the tert KO; (ii) the levels of known
 size-regulation intermediates, glucose (low) and adenosine (high), in the
 tert mutant, and the size defect’s rescue by supplemented glucose or the
 adenosine-antagonist, caffeine; (iii) the induction of the size defect in
 the WT by tert KO CM and TERT inhibitors. The tert KO’s other defects
 (delayed aggregation, irregular streaming) were associated with changes to
 cAMP-regulated processes (e.g. chemotaxis, cAMP pulsing) and their
 regulatory factors (e.g. cAMP; acaA, carA expression). Overexpression of
 WT tert in the tert KO rescued these defects (and size), and restored a
 single cAMP signaling centre. Our results indicate that TERT acts in
 novel, non-canonical and upstream ways, regulating key developmental
 events in Dictyostelium.
description: Numerical data for
 Nassir et al, 2019This file contains all
 numerical data for the plots described in the manuscript, Nassir et al.,
 2019. Numerical data for each figure is represented in each
 sheet.Numerical values_A telomerase
 with novel noncanonical roles TERT controls cellular aggregation and
 tissue size in Dictyostelium.xlsxNumerical values for
 supplementary infoNumerical values for
 Supplementary info.xlsxtert sequence used for
 SMART analysis and structure predictionsequences used for
 phylogenetic tree constructiontert all sps for MEGAX
 alignment.docx
DOI: 10.25824/redu/rhyzpb
title: Dados sobre a implementação e avaliação de um programa de capacitação de facilitadores em simulação clínica segundo o modelo Kirkpatrick

description: Dados sobre a implementação e avaliação de um programa de capacitação de facilitadores de simulação clínica. Tabelas de coletas de dados,
DOI: 10.5061/dryad.v26qd05
title: Data from: The interaction of phylogeny and community structure: linking the community composition and trait evolution of clades

description: Aim. Community phylogenetic studies use information about species’
 evolutionary relationships to understand the ecological processes of
 community assembly. A central premise of the field is that species’
 evolution maps onto ecological patterns, and phylogeny reveals something
 more than species’ traits alone about ecological mechanisms structuring
 communities such as environmental filtering, competition, and
 facilitation. We argue, therefore, that there is a need to better
 understand and model the interaction of phylogeny with species’ traits and
 community composition. Innovation. We outline a new approach that
 identifies clades that are eco-phylogenetically clustered or
 overdispersed, and then assesses whether those clades have different rates
 of trait evolution. Eco-phylogenetic theory would predict that the traits
 of clustered or overdispersed clades might have evolved differently,
 either in terms of tempo (fast or slow) or mode (e.g., under constraint or
 neutrally). We suggest that modelling the evolution of independent trait
 data in these clades represents a strong test of whether there is an
 association between species’ ecological co-occurrence patterns and
 evolutionary history. Main conclusions. Using an empirical dataset of
 mammals from around the world, we identify two clades of rodents whose
 species tend not to co-occur in the same local assemblages (are
 phylogenetically overdispersed), and then find independent evidence of
 slower rates of body mass evolution in these clades. Our approach, which
 assumes nothing about the mode of species’ trait evolution but rather
 seeks to explain it using ecological information, presents a new way to
 examine eco-phylogenetic structure.
description: Supplementary Materials
 1Description of
 'exact' methods to calculate clade-level significance and
 additional permutation tests of evolutionary model
 fitting.si-1.pdfSupplementary Materials 2R code that calculates the variance metric we outline in our manuscript. This code will be incorporated in the R package 'pez', which is available on CRAN (under 'clade.var'); please use the 'pez' version as we will be more easily able to update and maintain the code there.si-2-functions.RSupplementary Materials 3R code to run the simulations of our approach, as outlined in our manuscript.si-3-simulations.RSupplementary Materials 4R code to run our empirical analyses, as outlined in our manuscript. Please note that this script is completely reproducible, and will download the empirical data the user needs to repeat our analyses.si-4-empirical.R
DOI: 10.5061/dryad.5fm57t0
title: Data from: The demographic effects of functional traits: an integral projection model approach reveals population-level consequences of reproduction-defense tradeoffs

description: Quantitatively linking individual variation in functional traits to
 demography is a necessary step to advance our understanding of trait-based
 ecological processes. We constructed a population model for Asclepias
 syriaca to identify how functional traits affect vital rates and
 population growth and whether tradeoffs in chemical defense and demography
 alter population growth. Plants with higher foliar cardenolides had lower
 fiber, cellulose, and lignin levels, as well as decreased sexual and
 clonal reproduction. Average cardenolide concentrations had the strongest
 effect on population growth. In both the sexual and clonal pathway, the
 tradeoff between reproduction and defense affected population growth. We
 found that both increasing the mean of the distribution of individual
 plant values for cardenolides and herbivory decreased population growth.
 However, increasing the variance in both defense and herbivory increased
 population growth. Functional traits can impact population growth and
 quantifying individual-level variation in traits should be included in
 assessments of population-level processes.
description: ramet-based demographic
 and trait dataFile contains data for
 2014 and 2015 that were used to parameterize the vital rate functions.
 Contains both demographic and trait data.fulldata.csvspatial location data for ramets of A. syriacaFile contains spatial location data along 1 m wide transects for 2014 and 2015 for Asclepias syriaca ramets.mapdata.csvnumber of seeds per pod for A. syriacaFile contains seed count data for individual pods on Asclepias syriaca ramets.seeddata.csvdemographic data for ramets of A. syriacaFile contains demographic data collected between 2013-2017 at 7 sites for A. syriaca rametsstemdata.csvhttps://doi.org/10.5281/zenodo.2803738Code for "The demographic effects of functional traits: An integral projection model approach reveals population-level consequences of reproduction-defense tradeoffs"
DOI: 10.5061/dryad.rv70cs1
title: Data from: Enemy release from the effects of generalist granivores can facilitate Bromus tectorum invasion in the Great Basin Desert

description: The enemy release hypothesis (ERH) of plant invasion asserts that natural
 enemies limit populations of invasive plants more strongly in native
 ranges than in non-native ranges. Despite considerable empirical
 attention, few studies have directly tested this idea, especially with
 respect to generalist herbivores. This knowledge gap is important because
 escaping the effects of generalists is a critical aspect of the ERH that
 may help explain successful plant invasions. Here, we used consumer
 exclosures and seed addition experiments to contrast the effects of
 granivorous rodents (an important guild of generalists) on the
 establishment of cheatgrass (Bromus tectorum) in western Asia, where
 cheatgrass is native, vs. the Great Basin Desert, USA, where cheatgrass is
 exotic and highly invasive. Consistent with the ERH, rodent foraging
 reduced cheatgrass establishment by nearly 60% in western Asia but had no
 effect in the Great Basin. This main result corresponded with a
 region-specific foraging pattern: rodents in the Great Basin but not
 western Asia generally avoided seeds from cheatgrass relative to seeds
 from native competitors. Our results suggest that enemy release from the
 effects of an important guild of generalists may contribute to the
 explosive success of cheatgrass in the Great Basin. These findings
 corroborate classic theory on enemy release and expand our understanding
 of how generalists can influence the trajectory of exotic plant invasions.
description: Raw data -- Lucero et
 al. 2019 ENEMY RELEASEEstablishment of Bromus
 tectorum plants in cages open to and protected from rodents in Iran and
 the USA, and seed removal (i.e., preference) patterns of rodents in Iran,
 Uzbekistan, and the USA.Data for Lucero et al. 2019
 ENEMY RELEASE -- PUBLIC.xlsx
DOI: 10.5061/dryad.c0pv774
title: Data from: Phylotranscriptomics resolves phylogeny of the Heliozelidae (Adeloidea: Lepidoptera) and suggests a Late Cretaceous origin in Australia

description: Heliozelidae are a cosmopolitan family of small, day-flying moths, and
 include some pest species of commercial crops. Overall, the family is
 poorly known and lacks a well-resolved phylogeny. Previous molecular and
 taxonomic work has revealed rich undescribed diversity within the family,
 particularly in Australia; however, the relationships amongst the major
 clades or genera were not resolved. We therefore sequenced the
 transcriptomes of 39 taxa, representing all major genera of Heliozelidae,
 and seven outgroups representing most other Adeloidea families and the
 putative sister superfamily, Andesianoidea. The resulting phylogeny, based
 on the coding sequences of up to 1049 nuclear genes, provides a robust
 hypothesis for the generic relationships within Heliozelidae. On the basis
 of this analysis, the genus Plesiozela, previously proposed sister group
 of all other Heliozelidae, is excluded from the family and transferred to
 Incurvariidae. Additionally, we incorporated fossil and secondary time
 calibrations into our phylogeny and estimated that Heliozelidae ancestors
 first appeared at the beginning of the Late Cretaceous, approximately 95
 Mya. Finally, we propose an ancestral biogeographical range hypothesis of
 the family, based on a combination of our transcriptome data and a
 previous multigene study including over 100 species. We suggest the
 origins of the Heliozelidae were in the Australian region, with subsequent
 expansions to the rest of the world.
description: READMEDryadREADME.txtTableS1_SuppInfo_AllSpecimensDetails of all specimens used in phylogeny and specimens used for COI vouchers.TableS2_SuppInfo_transcriptome_statisticsExcel file containing results of transcriptome assemblies using Trinity v2.2Transcriptome Analysistranscriptome_analysis.tar.gzAlignmentsalignments.tar.gzTreesIQ-TREE ML and ASTRAL-III treestrees.tar.gzMCMCTreeSettings files for MCMCTree runsmcmctree.tar.gz
DOI: 10.5061/dryad.kg76k5b
title: Data from: Plasma assisted CO2 methanation: effects on the low-temperature activity of a Ni-Ce catalyst and reaction performance

description: Ni-Ce three-dimensional material with macropore diameter of 146.6±8.4 nm
 were synthesized and used for methanation catalyst. Firstly, H2-reduction
 of catalyst was conducted in thermal fixed bed and plasma reactor
 respectively, then X-ray diffraction (XRD) and CO2 Temperature Programmed
 Desorption (TPD) experiments on the two reduced samples were carried out
 to reveal the plasma effect on catalyst’s physicochemical properties. It
 was found that plasma reduction created more abundant basic sites for CO2
 adsorption, especially the medium basic sites were even doubled compared
 with the thermal reduced catalysts. The plasma reduced catalyst exhibited
 excellent low-temperature activity, ca. 50~60 oC lower than the thermal
 catalyst (the maximum CO2 conversion point). Based on the optimum reduced
 catalyst, plasma effect in the reactor level was further investigated
 under high gas hour space velocity (GHSV) ~50000 h-1. The plasma reactor
 showed higher CO2 conversion capacity and efficiency than the thermal
 reactor.
description: N2 isothermal
 adsorption-desorptionraw data for Figure
 3GHSV influence of
 methanation in different reactorsraw data for Figure 7
 and 8XRD patterns of fresh,
 plasma reduction and thermal reduction catalystsraw data for Fig
 4CO2 -TPD of plasma
 reduction and thermal reduction catalystsraw data for Fig
 5Bed temperature
 influence of methanation on different reduction
 catalystsraw data for Fig
 6
DOI: 10.60905/0suh89
title: Registro Toma 1ra Toma Barrial

description: &lt;p&gt;Movilizaci��n y plant��n art��stico realizado en el barrio Tejelo que incluy�� marcha desde el barrio 12 de octubre de la Zona Noroccidental de Medell��n. Fue la acci��n que permiti�� la movilizaci��n de la Zona Noroccidental en diversos momentos del Paro Nacional.&lt;/p&gt;
description: <br> Inicio y ascenso de la Paro Nacional #28A. 28 de abril al 28 de julio de 2021
DOI: 10.3886/icpsr300449
title: Control Group Participant Exposure to Presidential Campaign Ads
title: Archival Version

description: <p><b><strong>These data are restricted and require an application. To apply, see SOMAR’s </strong></b><a href="https://icpsr.atlassian.net/servicedesk/customer/portal/53"><u><b><strong>Application Portal</strong></b></u></a><b><strong> and </strong></b><a href="https://somar.atlassian.net/wiki/x/M4DdDg"><u><b><strong>Application Guide</strong></b></u></a><b><strong>.</strong></b></p><p><span>This dataset contains aggregated metrics summarizing U.S. adult active users' exposure to ads on Facebook and Instagram by the official presidential campaign accounts during each survey wave period before the 2020 election.</span></p>
DOI: 10.3886/icpsr300449.v1
title: Control Group Participant Exposure to Presidential Campaign Ads
title: Version 1

description: <p><b><strong>These data are restricted and require an application. To apply, see SOMAR’s </strong></b><a href="https://icpsr.atlassian.net/servicedesk/customer/portal/53"><u><b><strong>Application Portal</strong></b></u></a><b><strong> and </strong></b><a href="https://somar.atlassian.net/wiki/x/M4DdDg"><u><b><strong>Application Guide</strong></b></u></a><b><strong>.</strong></b></p><p><span>This dataset contains aggregated metrics summarizing U.S. adult active users' exposure to ads on Facebook and Instagram by the official presidential campaign accounts during each survey wave period before the 2020 election.</span></p>