cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21116049
title: ESM for MATLAB code from Measuring the linear viscoelastic regime of MCF-7 cells with a monolayer rheometer in the presence of microtubule-active anti-cancer drugs at high concentrations

description: This file shows the self-designed MATLAB code for measuring cell coverage of cells on the rheometer plates.
DOI: 10.6084/m9.figshare.21116049.v2
title: ESM for MATLAB code from Measuring the linear viscoelastic regime of MCF-7 cells with a monolayer rheometer in the presence of microtubule-active anti-cancer drugs at high concentrations

description: This file shows the self-designed MATLAB code for measuring cell coverage of cells on the rheometer plates.
DOI: 10.6084/m9.figshare.21116049.v1
title: ESM for MATLAB code from Measuring the linear viscoelastic regime of MCF-7 cells with a monolayer rheometer in the presence of microtubule-active anti-cancer drugs at high concentrations

description: This file shows the self-designed MATLAB code for measuring cell coverage of cells on the rheometer plates.
DOI: 10.6084/m9.figshare.19661235
title: Compilation of geochemical data from surface soil samples from China

description: 1. This file is a supplement to the manuscript “Modern silicate weathering regimes across China revealed by geochemical records from surface soils” by Guo et al. (2022, Journal of Geophysical Research: Earth Surface). 2. This file compiles bulk and fine fraction (&lt;2 μm) samples datasets, and the corresponding references. 3. Outliers with a low value are surrounded by features with high values (LH) and those with a high value are surrounded by features with low values (HL), at the 95% confidence level. The outliers were excluded from the kriging interpolation. 4. Meteorological data are generated using ArcGIS 10.2 and the spatial statistics and analytical methods described in section 2.4, using long-term (1961–2010) climate data. 5. Data of the time-averaged shear-wave velocity in the upper 30 m (Vs30) in China are from https://earthquake.usgs.gov. 6. Lithological data for China are from https://doi.org/10.1594/PANGAEA.788537. 7. Empty cells for MAP, MAT, MAP/PET, Vs30 and Lithology correspond to no data for discussion due to exclusion of CIA outliers. It also avoids the potential effects of the CIA outliers on discussion. 8. Instrumental analyses include X-ray fluorescence (XRF), Atomic Absorption Spectroscopy (AAS), Inductively Coupled Plasma-Atomic Emission Spectrometry (ICP-AES), Inductively Coupled Plasma Optical Emission Spectrometry (ICP-OES), and Inductively Coupled Plasma Mass Spectrometry (ICP-MS). 9. If you plan to use the compiled dataset in this file, please cite the paper of Guo et al. (2022, Journal of Geophysical Research: Earth Surface). <br>
DOI: 10.6084/m9.figshare.19661235.v4
title: Compilation of geochemical data from surface soil samples from across China

description: 1. This file is a supplement to the manuscript “Modern silicate weathering regimes across China revealed by geochemical records from surface soils” by Guo et al. (2022, Journal of Geophysical Research: Earth Surface). 2. This file compiles bulk and fine fraction (&lt;2 μm) samples datasets, and the corresponding references. 3. Outliers with a low value are surrounded by features with high values (LH) and those with a high value are surrounded by features with low values (HL), at the 95% confidence level. The outliers were excluded from the kriging interpolation. 4. Meteorological data are generated using ArcGIS 10.2 and the spatial statistics and analytical methods described in section 2.4, using long-term (1961–2010) climate data. 5. Data of the time-averaged shear-wave velocity in the upper 30 m (Vs30) in China are from https://earthquake.usgs.gov. 6. Lithological data for China are from https://doi.org/10.1594/PANGAEA.788537. 7. Empty cells for MAP, MAT, MAP/PET, Vs30 and Lithology correspond to no data for discussion due to exclusion of CIA outliers. It also avoids the potential effects of the CIA outliers on discussion. 8. Instrumental analyses include X-ray fluorescence (XRF), Atomic Absorption Spectroscopy (AAS), Inductively Coupled Plasma-Atomic Emission Spectrometry (ICP-AES), Inductively Coupled Plasma Optical Emission Spectrometry (ICP-OES), and Inductively Coupled Plasma Mass Spectrometry (ICP-MS). 9. If you plan to use the compiled dataset in this file, please cite the paper of Guo et al. (2022). <br>
DOI: 10.34740/kaggle/dsv/4297224
title: Bitcoin Tweets And Price Dataset
DOI: 10.6084/m9.figshare.20331282
title: A high-quality chromosome-scale Japanese flounder (Paralichthys olivaceus) genome assembly

description: Japanese flounder (Paralichthys olivaceus) is one of the most economically important marine flatfish cultured in China, Korea, and Japan. Herein, we produced a high-quality chromosome-scale genome assembly of Japanese flounder using PacBio Circular Consensus Sequencing (CCS) sequencing technologies. pol.gtf is the annotation file of the turbot genome assembly. pol_TPM is the gene expression matrix used for gene co-expression network inference. genes per module.xlsx is genes in every co-expression module. hub genes set.xlsx is the list of hub genes for every co-expression module. DEGs set.xlsx is the list of differential expression genes for each stress. GO enrichment.xlsx and KEGG enrichment.xlsx are the results of function enrichment for genes in co-expression modules that extremely significant correlated with each stress. key hub genes.xlsx is the list of candidate stress-related key hub genes generated by taking the intersection of hub gene set and DEGs set.
DOI: 10.6084/m9.figshare.20331282.v1
title: A high-quality chromosome-scale Japanese flounder (Paralichthys olivaceus) genome assembly

description: Japanese flounder (Paralichthys olivaceus) is one of the most economically important marine flatfish cultured in China, Korea, and Japan. Herein, we produced a high-quality chromosome-scale genome assembly of Japanese flounder using PacBio Circular Consensus Sequencing (CCS) sequencing technologies. pol.gtf is the annotation file of the turbot genome assembly. pol_TPM is the gene expression matrix used for gene co-expression network inference. genes per module.xlsx is genes in every co-expression module. hub genes set.xlsx is the list of hub genes for every co-expression module. DEGs set.xlsx is the list of differential expression genes for each stress. GO enrichment.xlsx and KEGG enrichment.xlsx are the results of function enrichment for genes in co-expression modules that extremely significant correlated with each stress. key hub genes.xlsx is the list of candidate stress-related key hub genes generated by taking the intersection of hub gene set and DEGs set.
DOI: 10.5517/ccdc.csd.cc28x4s4
title: CCDC 2112426: Experimental Crystal Structure Determination

description: Related Article: Li-Li Zhu, Lifang Tian, Kunhui Sun, Yiwen Li, Guanglu Liu, Bin Cai, Hui Zhang, Yahui Wang|2022|J.Org.Chem.|87|12963|doi:10.1021/acs.joc.2c01519
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28x4t5
title: CCDC 2112427: Experimental Crystal Structure Determination

description: Related Article: Li-Li Zhu, Lifang Tian, Kunhui Sun, Yiwen Li, Guanglu Liu, Bin Cai, Hui Zhang, Yahui Wang|2022|J.Org.Chem.|87|12963|doi:10.1021/acs.joc.2c01519
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28x4v6
title: CCDC 2112428: Experimental Crystal Structure Determination

description: Related Article: Li-Li Zhu, Lifang Tian, Kunhui Sun, Yiwen Li, Guanglu Liu, Bin Cai, Hui Zhang, Yahui Wang|2022|J.Org.Chem.|87|12963|doi:10.1021/acs.joc.2c01519
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.21299193
title: Floristic and Structure of Woody Vegetation in a Caatinga Area Between 2015 and 2019, in ASSÚ/RN

description: Abstract To characterize the floristic composition and horizontal structure of the National Forest of Açú from 2015 to 2019, 20 permanent plots of 400 m² were allocated, and all woody individuals with a diameter at breast height (CBH) ≥ 2 cm were measured on both occasions. Between 2015 and 2019, there was an increase in floristic richness from 23 to 34 species, especially Cenostigma pyramidale and Handroanthus impetiginosus due to their high phytosociological values. Although an 8.7% reduction in the number of individuals in the 4.4 cm class center was observed between the respective years, there was a volumetric increase of 4.85 m³ ha-1, that is 1.21 m³ ha-1 year-1. Changes in floristic composition, diameter distribution, and volumetry reflect the development of vegetation and part of its dynamics; indicating its state of conservation and, consequently, the achievement of the conservation objectives proposed by the Unit.
DOI: 10.6084/m9.figshare.21299193.v1
title: Floristic and Structure of Woody Vegetation in a Caatinga Area Between 2015 and 2019, in ASSÚ/RN

description: Abstract To characterize the floristic composition and horizontal structure of the National Forest of Açú from 2015 to 2019, 20 permanent plots of 400 m² were allocated, and all woody individuals with a diameter at breast height (CBH) ≥ 2 cm were measured on both occasions. Between 2015 and 2019, there was an increase in floristic richness from 23 to 34 species, especially Cenostigma pyramidale and Handroanthus impetiginosus due to their high phytosociological values. Although an 8.7% reduction in the number of individuals in the 4.4 cm class center was observed between the respective years, there was a volumetric increase of 4.85 m³ ha-1, that is 1.21 m³ ha-1 year-1. Changes in floristic composition, diameter distribution, and volumetry reflect the development of vegetation and part of its dynamics; indicating its state of conservation and, consequently, the achievement of the conservation objectives proposed by the Unit.
DOI: 10.6084/m9.figshare.21299194
title: The use of adenoviral vectors in gene therapy and vaccine approaches

description: Abstract Adenovirus was first identified in the 1950s and since then this pathogenic group of viruses has been explored and transformed into a genetic transfer vehicle. Modification or deletion of few genes are necessary to transform it into a conditionally or non-replicative vector, creating a versatile tool capable of transducing different tissues and inducing high levels of transgene expression. In the early years of vector development, the application in monogenic diseases faced several hurdles, including short-term gene expression and even a fatality. On the other hand, an adenoviral delivery strategy for treatment of cancer was the first approved gene therapy product. There is an increasing interest in expressing transgenes with therapeutic potential targeting the cancer hallmarks, inhibiting metastasis, inducing cancer cell death or modulating the immune system to attack the tumor cells. Replicative adenovirus as vaccines may be even older and date to a few years of its discovery, application of non-replicative adenovirus for vaccination against different microorganisms has been investigated, but only recently, it demonstrated its full potential being one of the leading vaccination tools for COVID-19. This is not a new vector nor a new technology, but the result of decades of careful and intense work in this field.
DOI: 10.6084/m9.figshare.21299194.v1
title: The use of adenoviral vectors in gene therapy and vaccine approaches

description: Abstract Adenovirus was first identified in the 1950s and since then this pathogenic group of viruses has been explored and transformed into a genetic transfer vehicle. Modification or deletion of few genes are necessary to transform it into a conditionally or non-replicative vector, creating a versatile tool capable of transducing different tissues and inducing high levels of transgene expression. In the early years of vector development, the application in monogenic diseases faced several hurdles, including short-term gene expression and even a fatality. On the other hand, an adenoviral delivery strategy for treatment of cancer was the first approved gene therapy product. There is an increasing interest in expressing transgenes with therapeutic potential targeting the cancer hallmarks, inhibiting metastasis, inducing cancer cell death or modulating the immune system to attack the tumor cells. Replicative adenovirus as vaccines may be even older and date to a few years of its discovery, application of non-replicative adenovirus for vaccination against different microorganisms has been investigated, but only recently, it demonstrated its full potential being one of the leading vaccination tools for COVID-19. This is not a new vector nor a new technology, but the result of decades of careful and intense work in this field.
DOI: 10.6084/m9.figshare.21299196
title: The Effects of Hysterectomy on Urinary and Sexual Functions of Women with Cervical Cancer: A Systematic Review

description: Abstract Objective This systematic review aims at describing the prevalence of urinary and sexual symptoms among women who underwent a hysterectomy for cervical cancer. Methods A systematic search in six electronic databases was performed, in September 2019, by two researchers. The text search was limited to the investigation of prevalence or occurrence of lower urinary tract symptoms (LUTS) and sexual dysfunctions in women who underwent a hysterectomy for cervical cancer. For search strategies, specific combinations of terms were used. Results A total of 8 studies, published between 2010 and 2018, were included in the sample. The average age of the participants ranged from 40 to 56 years, and the dysfunctions predominantly investigated in the articles were urinary symptoms (n= 8). The rates of urinary incontinence due to radical abdominal hysterectomy ranged from 7 to 31%. The same dysfunction related to laparoscopic radical hysterectomy varied from 25 to 35% and to laparoscopic nerve sparing radical hysterectomy varied from 25 to 47%. Nocturia ranged from 13%, before treatment, to 30%, after radical hysterectomy. The prevalence rates of dyspareunia related to laparoscopic radical hysterectomy and laparoscopic nerve sparing radical hysterectomy ranged from 5 to 16% and 7 to 19% respectively. The difficulty in having orgasm was related to laparoscopic radical hysterectomy (10 to 14%) and laparoscopic nerve sparing radical hysterectomy (9 to 19%). Conclusion Urinary and sexual dysfunctions after radical hysterectomy to treat cervical cancer are frequent events. The main reported disorders were urinary incontinence and dyspareunia.
DOI: 10.6084/m9.figshare.21299196.v1
title: The Effects of Hysterectomy on Urinary and Sexual Functions of Women with Cervical Cancer: A Systematic Review

description: Abstract Objective This systematic review aims at describing the prevalence of urinary and sexual symptoms among women who underwent a hysterectomy for cervical cancer. Methods A systematic search in six electronic databases was performed, in September 2019, by two researchers. The text search was limited to the investigation of prevalence or occurrence of lower urinary tract symptoms (LUTS) and sexual dysfunctions in women who underwent a hysterectomy for cervical cancer. For search strategies, specific combinations of terms were used. Results A total of 8 studies, published between 2010 and 2018, were included in the sample. The average age of the participants ranged from 40 to 56 years, and the dysfunctions predominantly investigated in the articles were urinary symptoms (n= 8). The rates of urinary incontinence due to radical abdominal hysterectomy ranged from 7 to 31%. The same dysfunction related to laparoscopic radical hysterectomy varied from 25 to 35% and to laparoscopic nerve sparing radical hysterectomy varied from 25 to 47%. Nocturia ranged from 13%, before treatment, to 30%, after radical hysterectomy. The prevalence rates of dyspareunia related to laparoscopic radical hysterectomy and laparoscopic nerve sparing radical hysterectomy ranged from 5 to 16% and 7 to 19% respectively. The difficulty in having orgasm was related to laparoscopic radical hysterectomy (10 to 14%) and laparoscopic nerve sparing radical hysterectomy (9 to 19%). Conclusion Urinary and sexual dysfunctions after radical hysterectomy to treat cervical cancer are frequent events. The main reported disorders were urinary incontinence and dyspareunia.
DOI: 10.6084/m9.figshare.21299199
title: Mental health education at work: worker’s protagonism within unions

description: Abstract Objective: to report an extension activity on mental health at work, based on Health Education strategies, conducted by university professors-upon request by the Steelworkers Union-with participation of industrial workers, in São Paulo, Brazil. Methods: carried out by professors and workers, the planning resulted in five meetings based on Health Education participative strategies. Throughout the process, adjustments were made aimed at the demands that arose in the meetings. Results: the discussions included (a) emerging issues in mental health, (b) depression, anxiety and alcohol/drug use, (c) municipal Psychosocial Care Network, (d) mental health at work. Moreover, based on previous experiences in the daily work routine, the participant reflected on the importance of early identification of mental suffering, the need for a support network among workers, and the organization of the care flow within the municipal Psychosocial Care Network. Conclusion: the partnership between workers, the Union and university proved to be an important tool to develop Health Education actions and strengthen worker’s protagonism.
DOI: 10.6084/m9.figshare.21299199.v1
title: Mental health education at work: worker’s protagonism within unions

description: Abstract Objective: to report an extension activity on mental health at work, based on Health Education strategies, conducted by university professors-upon request by the Steelworkers Union-with participation of industrial workers, in São Paulo, Brazil. Methods: carried out by professors and workers, the planning resulted in five meetings based on Health Education participative strategies. Throughout the process, adjustments were made aimed at the demands that arose in the meetings. Results: the discussions included (a) emerging issues in mental health, (b) depression, anxiety and alcohol/drug use, (c) municipal Psychosocial Care Network, (d) mental health at work. Moreover, based on previous experiences in the daily work routine, the participant reflected on the importance of early identification of mental suffering, the need for a support network among workers, and the organization of the care flow within the municipal Psychosocial Care Network. Conclusion: the partnership between workers, the Union and university proved to be an important tool to develop Health Education actions and strengthen worker’s protagonism.
DOI: 10.6084/m9.figshare.21299202
title: Brazilian Atlantic Forest and Pampa Biomes in the spotlight: an overview of Aspergillus, Penicillium, and Talaromyces (Eurotiales) species and the description of Penicillium nordestinense sp. nov.

description: ABSTRACT The knowledge of the geographical distribution of fungi is essential to promote the understanding of global and national fungal diversity patterns. In this study, we provide a literature-based checklist of Aspergillus, Penicillium, and Talaromyces species recorded in the biomes of the Brazilian Atlantic Forest and the Brazilian Pampa. Only Penicillium digitatum was reported for the Pampa biome. For the Atlantic Forest, a total of 169 species (68 Aspergillus, 79 Penicillium, and 22 Talaromyces) are reported, of which 20 are typified with specimens from this biome, including the novel species Penicillium nordestinense (section Lanata-Divaricata) that is described in this study. Penicillium nordestinense is phylogenetically related to the invalidly described species Penicillium setosum, and this species is validated here. Soil was the most common substrate from where species were reported. Several reported species are well known in biotechnological processes. Penicilliopsis zonata and Sclerocleista ornata, species previously treated in Aspergillus, are recorded. This checklist reflects the limited knowledge of fungal species in tropical environments, such as the Brazilian Atlantic Forest and Pampa biomes. This information is a good framework for understanding the Brazilian diversity of Aspergillus, Penicillium, and Talaromyces and provides data for future fungal biogeographical studies in tropical environments.
DOI: 10.6084/m9.figshare.21299202.v1
title: Brazilian Atlantic Forest and Pampa Biomes in the spotlight: an overview of Aspergillus, Penicillium, and Talaromyces (Eurotiales) species and the description of Penicillium nordestinense sp. nov.

description: ABSTRACT The knowledge of the geographical distribution of fungi is essential to promote the understanding of global and national fungal diversity patterns. In this study, we provide a literature-based checklist of Aspergillus, Penicillium, and Talaromyces species recorded in the biomes of the Brazilian Atlantic Forest and the Brazilian Pampa. Only Penicillium digitatum was reported for the Pampa biome. For the Atlantic Forest, a total of 169 species (68 Aspergillus, 79 Penicillium, and 22 Talaromyces) are reported, of which 20 are typified with specimens from this biome, including the novel species Penicillium nordestinense (section Lanata-Divaricata) that is described in this study. Penicillium nordestinense is phylogenetically related to the invalidly described species Penicillium setosum, and this species is validated here. Soil was the most common substrate from where species were reported. Several reported species are well known in biotechnological processes. Penicilliopsis zonata and Sclerocleista ornata, species previously treated in Aspergillus, are recorded. This checklist reflects the limited knowledge of fungal species in tropical environments, such as the Brazilian Atlantic Forest and Pampa biomes. This information is a good framework for understanding the Brazilian diversity of Aspergillus, Penicillium, and Talaromyces and provides data for future fungal biogeographical studies in tropical environments.