cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10278749
title: Crime in Chicago: 2001 to 2019

description: A complete list of crimes committed in Chicago between the years 2001 – 2019 (inclusive), and was studied by Sainsbury-Dale et al. (2023). The data were provided by the Chicago Police Department and originally downloaded from the now retired open data source website, Plenario.
Before pre-processing, the data set contained 7,138,725 observations. However, 68,904 observations did not have a location recorded and were removed. A further 163 observations were removed as they were recorded at coordinates (36.619446395, -91.686565684), which is on the border of Missouri and Arkansas (certainly not in Chicago, Illinois). This left 7,069,658 valid observations. 
The data contains the following fields:

id : An identifier unique to each crime.
case_number : The case number of each crime.
date : The date and time at which each crime took place.
block : The neighbourhood block at which each crime occurred.
primary_type : A factor indicating the type of each crime (e.g., burgulary, theft, etc.).
description : A brief description of each crime.
location_description : A brief description of the location at which each crime occurred.
arrest : Logical indicating whether or not an arrest was made for each associated crime.
district : The district at which each crime occurred.
community_area : The community_area at which each crime occurred.
fbi_code : Federal Bureau of Investigation (FBI) code of each crime.
year : The year in which the crime occurred.
longitude : Latitude location of each.
latitute : Longitude location of each crime.
location : Latitude and Longitude (in that order) of each crime.
 
References 
Sainsbury-Dale, M., Zammit-Mangion, A., and Cressie, N. (2023). Modelling big, heterogeneous, non-Gaussian spatial and spatio-temporal data using FRK. Journal of Statistical Software, to appear.
DOI: 10.5281/zenodo.10278737
title: Fecal microbiota profiling of NLRC4 KO mice and their WT littermates

description: Fecal microbiota profiling of NLRC4 KO mice and their WT littermates were performed using 16S rRNA gene amplicon sequencing targeting the V4 region with the Earth Microbiome primers. Mice were profiled at week 10 and week 20.
DOI: 10.5281/zenodo.4891280
title: Nansen Ice Shelf data (2016-2019)

description: Data collected at Nansen Ice Shelf between 2016 and 2019 including:
1. Ice-penetrating radar data with dGPS surface elevations. These are divided into three sites with site 1 closest to the grounding line. Each file contains: Easting(m), Northing (m), ice thickness (m), ice surface elevation (m asl) and ice draft (m asl).
2. Airborne radar transect with columns as follows: Easting(m), Northing (m), ice draft (m asl).
3. Ocean glider data from adjacent to, and underneath the Nansen Ice Shelf with columns as follows: Latitude, Longitude, depth below ocean surface (m)
Easting and northing data are Antarctic Polar Stereographic coordinates
DOI: 10.5281/zenodo.4891281
title: Nansen Ice Shelf data (2016-2019)

description: Data collected at Nansen Ice Shelf between 2016 and 2019 including:
1. Ice-penetrating radar data with dGPS surface elevations. These are divided into three sites with site 1 closest to the grounding line. Each file contains: Easting(m), Northing (m), ice thickness (m), ice surface elevation (m asl) and ice draft (m asl).
2. Airborne radar transect with columns as follows: Easting(m), Northing (m), ice draft (m asl).
3. Ocean glider data from adjacent to, and underneath the Nansen Ice Shelf with columns as follows: Latitude, Longitude, depth below ocean surface (m)
Easting and northing data are Antarctic Polar Stereographic coordinates
DOI: 10.25952/z0e8-6w54
title: Investigating contradictory findings related to auxin and THOUSAND-GRAIN WEIGHT 6 (TGW6) gene and their relationship with grain weight in wheat

description: All data are based on my three research experiments that I completed in my PhD study. Sequence information for all genes are in text document (.txt) files. These were used to create protein phylogenetic trees for TaTAR, TaYUC, TaTGW6 and TaIAGLU using Mega7 software. The figures of the trees are in a word file. The bar graphs in the excel files are the expression results of the genes. RNA sequencing (RNA-seq) data of TaTAR, TaYUC and TaTGW6 were downloaded from expVIP (http://www.wheat-expression.com/). Rice RNA-seq data were downloaded from ‘Rice Genome Annotation Project’. These data were used to create Heat Maps for the genes. The effects of different IAA inhibitors and IAA on different yield parameters are found in excel files.
description: All data are based on my three research experiments that I completed in my PhD study. Sequence information for all genes are in text document (.txt) files. These were used to create protein phylogenetic trees for TaTAR, TaYUC, TaTGW6 and TaIAGLU using Mega7 software. The figures of the trees are in a word file. The bar graphs in the excel files are the expression results of the genes. RNA sequencing (RNA-seq) data of TaTAR, TaYUC and TaTGW6 were downloaded from expVIP (http://www.wheat-expression.com/). Rice RNA-seq data were downloaded from ‘Rice Genome Annotation Project’. These data were used to create Heat Maps for the genes. The effects of different IAA inhibitors and IAA on different yield parameters are found in excel files.
DOI: 10.34740/kaggle/dsv/7142282
title: WallStreetBets 2022
DOI: 10.5281/zenodo.10277397
title: Data for "Yoked Surface Codes"

description: Statistics collected, circuits generated, and some of the code written as part of the paper "Yoked Surface Codes".
DOI: 10.5281/zenodo.10277396
title: Data for "Yoked Surface Codes"

description: Statistics collected, circuits generated, and some of the code written as part of the paper "Yoked Surface Codes".
DOI: 10.5519/qd.oxh6nk16
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (12 records)
DOI: 10.25345/c5cf9jh9h
title: MassIVE MSV000093590 - Identification of 187AA-interacting proteins by IP
title: Identification of 187AA-interacting proteins by IP.
DOI: 10.5519/qd.iub8nuuh
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1373 records)
DOI: 10.6084/m9.figshare.14790132
title: E.mollis Data Files

description: Genome data and gff files for <i>E. mollis</i>
DOI: 10.5281/zenodo.8404747
title: Map data of historical global estimates of soil respiration

description: The map data of global soil respiration converted to NetCDF format.
All open access available estimates were collated.
Shoji Hashimoto, Akihiko Ito, Kazuya Nishina (2023) "Divergent data-driven estimates of global soil respiration". Communications Earth & Environment, 4 Article number: 460
https://doi.org/10.1038/s43247-023-01136-2 
Refer to Table 1 for the study ID and data source or the attributions of the NetCDF file.
DOI: 10.5281/zenodo.8404746
title: Map data of historical global estimates of soil respiration

description: The map data of global soil respiration converted to NetCDF format.
All open access available estimates were collated.
Shoji Hashimoto, Akihiko Ito, Kazuya Nishina (2023) "Divergent data-driven estimates of global soil respiration". Communications Earth & Environment, 4 Article number: 460
https://doi.org/10.1038/s43247-023-01136-2 
Refer to Table 1 for the study ID and data source or the attributions of the NetCDF file.
DOI: 10.15468/rx5qnn
title: Checklist of Vermont Mammals

description: A checklist of mammal (Mammalia) species that have been recorded in Vermont, USA. This checklist is part of a statewide checklist of all animals, plants and fungi being prepared by the Vermont Atlas of Life. The Vermont Life List (VLL) is aimed at being a comprehensive catalogue of all known species of organisms found in Vermont. Like all science, VLL is a work in progress. Many taxonomic groups remain deficient. The goal of the VLL is to list every distinct species in each taxonomic group from aphids to zooplankton. At present, some taxonomic groups are complete and updated as needed, while others are lacking experts to help determine the faunal list for Vermont. For centuries, scientists have labored to discover and describe the diversity of life here in Vermont and beyond, and discoveries are still being made. The VLL database uses a set of generally accepted references, augmented by recent scientific literature and expert opinion, to establish a standard scientific name for every species and their hierarchical classification. Generally, VLL follows the Integrated Taxonomic Information System (ITIS) for authoritative taxonomic information on plants, animals, and fungi of North America.
This checklist is derived from: A checklist of mammals by the Vermont Fish and Wildlife Department; Osgood, F. L. (1938). The mammals of Vermont. Journal of Mammalogy, 19(4), 435-441. DOI: 10.2307/1374228; Vermont Small Mammal Atlas (https://www.northwoodscenter.org/wordpress/forest-stewardship-institute-fsi/small-mammal-atlas/) and other sources. Distribution data and other information was also captured from the historic Osgood (1938) publication.
DOI: 10.25952/nb0w-pp05
title: Phosphorus and Potassium Nutrient Management of Mungbean (Vigna radiata L.) in Sandy Soils

description: The data compilation for my thesis includes all the experimental data that we conducted under UNE facilities (Agronomy and soil science glasshouse, laboratories and sandy soils from the Kirby farm). All collected plant and soil parameters data collections and chemical analysis results of experiment 1 to 5 grouped in each corresponding Chapters of the thesis. Other MS word collections in additional folders has stored in the purpose of easy access to be used for journal publication from the Thesis compilation for contributors.
description: The data compilation for my thesis includes all the experimental data that we conducted under UNE facilities (Agronomy and soil science glasshouse, laboratories and sandy soils from the Kirby farm). All collected plant and soil parameters data collections and chemical analysis results of experiment 1 to 5 grouped in each corresponding Chapters of the thesis. Other MS word collections in additional folders has stored in the purpose of easy access to be used for journal publication from the Thesis compilation for contributors.
DOI: 10.25340/r4/l02tcs
title: Related Data for Thesis/Dissertation: The effect of diagnostic labels on preschool teachers' perception towards strengths and difficulties in students with autism spectrum disorder

description: This study aims to investigate the effects of diagnostic labels on preschool teachers’ attitudes towards the strengths and difficulties of students with Autism Spectrum Disorder (ASD) in the mainstream preschool setting in Singapore. Secondarily, it aims to explore whether preschool teachers’ attitudes would differ depending on the disclosure of a specific or a generic label, and to investigate the factors affecting preschool teachers’ attitudes towards students with ASD. The sample consisted of 106 mainstream preschool teachers (seven male and 99 female; age range = 21 – 58 years) from Singapore. Using a mixed-method design, a total of 15 vignettes depicting characteristics of students with ASD as strengths, difficulties, and neutral behaviors were developed for this study and presented via an online survey in a randomized order. Participants were randomly assigned to one of three experimental groups: ASD Label, Special Needs Label, No Label. Respectively, participants in each group were told that the students in the vignettes were identified as having an ASD diagnosis, a special needs diagnosis, or were not informed that the student in the vignette has any diagnoses. Participants were asked to rate their openness towards the featured student and complete a measure of their ASD knowledge. Findings suggest that the disclosure of a student’s special needs label improved teachers’ attitudes (i.e., greater openness) towards the difficulties faced by students with ASD compared to when no label was disclosed. The disclosure of an ASD label did not result in similar improvements in teachers’ attitudes. There were no significant differences in teachers’ attitudes towards the strengths of students with ASD when a diagnostic label was disclosed, but qualitative feedback from participants indicated that they would perceive the student with ASD most positively if the student’s difficulties were also perceived as his/her source of strengths. No significant individual predictors were found regarding teachers’ attitudes towards students with ASD.
DOI: 10.25340/r4/o2cmdh
title: Related Data for Thesis/Dissertation: Factors influencing teachers' self-efficacy beliefs in delivering a tier 2 CBT-based programme in secondary schools and upper primary levels

description: Given that there is an increase in the number of children with social-emotional and behavioural difficulties and schools are best positioned to support them, Cognitive-Behavioural Therapy (CBT)-based programmes within a Tiered System of Support framework may be implemented. A Tier 2 programme may be considered as it is an efficient use of resources to target a larger group of students than Tier 3 while being more targeted than Tier 1. Implementation drivers of staff selection and training would need to be considered for effective implementation. As such, this study explored factors that were related to teacher self-efficacy beliefs for delivering a Tier 2 CBT-based programme. Vignettes which required participants to consider how confident they would feel when required to deliver and facilitate sessions were used. Survey data on 103 teachers’ (mean age = 38.0 years, SD = 9.63) self-efficacy beliefs for teaching in general (using the Teacher Self-Efficacy Scale [TSES]), teachers’ sources of self-efficacy beliefs (Mastery Experience, Vicarious Experience, Social Persuasion, Physiological/Affective State), as well as demographic variables were collected. Based on the quantitative results, one of the four theorised sources of self-efficacy, Mastery Experience, and self-efficacy beliefs for teaching in general were significant predictors of self-efficacy beliefs for delivering a Tier 2 CBT-based programme. While quantitative results did not suggest that Vicarious Experience was a significant predictor, it was frequently highlighted when participants were asked for qualitative comments that opportunities to observe peers, professionals and other teachers with more experience, as well as role-play, would help them feel more confident to deliver such sessions. Additionally, this study did not find any significant correlation between self-efficacy beliefs for delivering a Tier 2 CBT-based programme and demographic variables, including years of experience and prior training in social-emotional support. The lack of a quantitative relationship between prior training and self-efficacy beliefs for delivering a CBT-based programme might be due to the prior training not being specific to providing a CBT-based programme. On the other hand, training was often cited in response to the qualitative items as a type of support that participants felt would help them feel more confident to deliver such a programme. Hence, training which is specific to the domain in which self-efficacy beliefs needs to be raised should be provided. These results can be used to inform the selection of educators for such a programme and in designing the training for these teachers. Future studies may then explore the outcomes of such trainings and CBT-based programmes both in terms of teacher self-efficacy beliefs as well as student outcomes.
DOI: 10.5281/zenodo.10277092
title: SmartDIMM_Artifact
DOI: 10.5281/zenodo.10277093
title: SmartDIMM_Artifact
DOI: 10.5281/zenodo.10277154
title: SmartDIMM_Artifact
DOI: 10.5281/zenodo.10277878
title: SmartDIMM_Artifact
DOI: 10.5281/zenodo.10278844
title: SmartDIMM_Artifact
DOI: 10.6084/m9.figshare.24634755
title: Thermally Activated Delayed Fluorescence emitter

description: This is a Thermally Activated Delayed Fluorescence emitter containing more than 250 samples.We also added some donor and receptor molecular fragments.If you would like to use this dataset, please contact me. My email is gammanhang@gmail.com
DOI: 10.6084/m9.figshare.24634755.v2
title: Thermally Activated Delayed Fluorescence emitter dataset

description: This is a Thermally Activated Delayed Fluorescence emitter data set containing more than 250 samples.We also added some donor and receptor molecular fragments.If you would like to use this dataset, please contact me. My email is gammanhang@gmail.com
DOI: 10.34740/kaggle/dsv/7141485
title: Disney's Deadly Incidents
DOI: 10.6073/pasta/152ed98663904892d9d11903949cadb7
title: Looking beyond the mean: Drivers of variability in postfire stand development of conifers in Greater Yellowstone

description: High-severity, infrequent fires in forests shape landscape mosaics of
 stand age and structure for decades to centuries, and forest structure
 can vary substantially even among same-aged stands. This variability
 among stand structures can affect landscape-scale carbon and nitrogen
 cycling, wildlife habitat availability, and vulnerability to
 subsequent disturbances. We used an individual-based forest process
 model (iLand) to ask: Over 300 years of postfire stand development,
 how does variation in early regeneration densities versus abiotic
 conditions influence among-stand structural variability for four
 conifer species widespread in western North America? We parameterized
 iLand for lodgepole pine (Pinus contorta var. latifolia), Douglas-fir
 (Pseudotsuga menziesii var. glauca), Engelmann spruce (Picea
 engelmannii), and subalpine fir (Abies lasiocarpa) in Greater
 Yellowstone (USA). Simulations were initialized with field data on
 regeneration following stand-replacing fires, and stand development
 was simulated under historical climatic conditions without further
 disturbance. Stand structure was characterized by stand density and
 basal area. Stands became more similar in structure as time since fire
 increased. Basal area converged more rapidly among stands than tree
 density for Douglas-fir and lodgepole pine, but not for subalpine fir
 and Engelmann spruce. For all species, regeneration-driven variation
 in stand density persisted for at least 99 years postfire, and for
 lodgepole pine, early regeneration densities dictated among-stand
 variation for 217 years. Over time, stands shifted from
 competition-driven convergence to environment-driven divergence, in
 which variability among stands was maintained or increased. The
 relative importance of drivers of stand structural variability
 differed between density and basal area and among species due to
 differential species traits, growth rates, and sensitivity to
 intraspecific competition versus abiotic conditions. Understanding
 dynamics of postfire stand development is increasingly important for
 anticipating future landscape patterns as fire activity increases.

 
 This dataset was used in the publication Braziunas et al. (2018),
 Forest Ecology and Management
 https://doi.org/10.1016/j.foreco.2018.08.034
DOI: 10.34703/gzx1-9v95/8pc8jy
title: Using the SP!CE Framework to Code Influence Campaign Activity on Social Media: Case Study on the 2022 Brazilian Presidential Election

description: We describe a case study in the use of the Structured Process for Information Campaign Enhancement (SP!CE, version 2.1) to evaluate influence campaigns present in the 2nd round of the Brazilian presidential election in 2022 October. SP!CE is a US-military focused framework for describing both friendly and adversary actions in influence campaigns, and is inter-operable with the Disinformation Analysis and Risk Management (DISARM) framework. The purpose of the case study is to demonstrate how SP!CE can be used to describe influence campaign behaviors. We selected the Brazilian election as the target of the case study as it is known that there were significant amounts of mis- and disinformation present on social media during the campaigns. Our goal was to demonstrate how SP!CE could be applied in such a context, showing how social media content could be aligned with information campaign behaviors and how such an alignment can be used to analyze which mis- and disinformation narratives were in play. Additionally, we aim to provide insights on best practices regarding how to apply the framework in further research. Included in this data release is the coding (contained in an Excel spreadsheet) and screenshots of the relevant social media posts. Because social media posts are potentially sensitive information, access will be granted to the data on a case by case basis.
DOI: 10.5281/zenodo.10278779
title: Pre-eclampsia and offspring blood pressure meta-analysis
DOI: 10.5281/zenodo.10278780
title: Pre-eclampsia and offspring blood pressure meta-analysis
DOI: 10.5281/zenodo.10278878
title: Subductability of continental lithosphere

description: Dataset for subductability of continental lithosphere
DOI: 10.5281/zenodo.10278879
title: Subductability of continental lithosphere

description: Dataset for subductability of continental lithosphere
DOI: 10.25914/q5na-a058
title: NCI WeatherBench: An ML/AI benchmark dataset for medium-range weather forecasting
DOI: 10.26188/24190020
title: CG&D_2023_Calculations.zip

description: Raw output from calculations performed for paper submission:
DOI: 10.26188/24190020.v1
title: CG&D_2023_Calculations.zip

description: Raw output from calculations performed for paper submission:
DOI: 10.6084/m9.figshare.24760665
title: rawdata.7z

description: Instruction: More and more attention has been paid to the role of synonymous substitution in evolution, in which codon usage preference can affect gene expression distribution and protein structure and function. Vesicular glutamate transporter (VGLUT) consists of three isoforms, among which VGLUT3 is significantly different from other VGLUTs in functional importance, expression level, and distribution range, whose reason is still unclear. This study sought to analyze the role of codon preference in VGLUT differentiation.Method: To conduct an evolutionary analysis of the three VGLUTs, this paper uses bioinformatics research methods to analyze the coding sequences of the three VGLUTs in different species and compare the codon usage patterns. Furthermore, the differences among the three VGLUTs were analyzed by combining functional importance, expression level, distribution range, gene structure, protein relationship network, expression at specific developmental stages, and evolutionary relationship tree, and the influence of codon usage pattern was explored.Result: The results showed that the greater the VGLUT codon usage preference was, the less important the gene function was, the lower the expression specificity was, and the longer the time needed for development to maturity was. VGLUT3 has the largest interspecies evolutionary distance, VGLUT2 has the smallest interspecies evolutionary distance, VGLUT3 has a large evolutionary distance with the rest of the VGLUT, and the degree of codon usage preference of VGLUT is positively correlated with the rate of protein evolution.Conclusion: Codon usage preference is a potential factor affecting VGLUT developmental expression and protein evolution.