cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27254208.v2
title: DATOS SUPLEMENTARIOS. Caracterización de las prácticas ganaderas del yacimiento de Niuet (l’Alqueria d’Asnar, Alicante) en el contexto de los asentamientos del IV al III milenio a.C. en el este de la península ibérica

description: The archaeozoological analysis of the Niuet site (l’Alqueria d’Asnar, Alicante) has allowed characterising the economic importance of husbandry practices during the Late Neolithic in the middle Serpis valley. The results show the predominance of domestic species over wild ones. Although caprines are the most abundant species, cattle acquire greater economic importance, evidencing a significant change in husbandry strategies concerning the 6th millennium BC in the eastern Iberian Peninsula. The current archaeological record points to greater use of secondary products, possibly influenced by socioeconomic factors and favourable environmental conditions for maintaining and exploiting domestic herds. This work contributes to understanding husbandry management practices in open-air settlements, specifically, during the 4th millennium BC, before metallurgy and the Bell Beaker phenomenon, facilitating understanding of the change processes in the Serpis valley.
DOI: 10.6084/m9.figshare.21973529.v1
title: Benchmark Architectures and Running Logs for RANUM

description: 1. The GRIST benchmark (in both original program format and ONNX format, model_zoo.zip) for numerical defects in deep neural networks. 2. The running logs (results.zip) for RANUM and GRIST tool. See detailed documentation at https://github.com/llylly/RANUM.
DOI: 10.6084/m9.figshare.20539899.v1
title: Cat predation data

description: Wildlife hospital data on cat predation 2006-2022
DOI: 10.6084/m9.figshare.7133612.v2
title: Tables SI and SII...Development of QSAR machine learning based models.pdf

description: Performance of QSAR classification models to predict the effect of chemical substances on the melanoma cell line SK-MEL-5<br>
DOI: 10.6084/m9.figshare.14445741.v2
title: Craighead_AR_July2010.zip

description: Captured July 10th, 2010Landsat Collection 2 Level 1Landsat 5Path: 023Row: 035<br>Bands 2-4, QA_Pixle
DOI: 10.6084/m9.figshare.19499441.v1
title: patches and local annotations, slide 145, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.11857698.v1
title: LES-AV dataset

description: Data corresponding to our paper Orlando, J. I., Breda, J. B., Van Keer, K., Blaschko, M. B., Blanco, P. J., & Bulant, C. A. (2018, September). Towards a glaucoma risk index based on simulated hemodynamics from fundus images. In <i>International Conference on Medical Image Computing and Computer-Assisted Intervention</i> (pp. 65-73). Springer, Cham.<br>Please, cite the corresponding article if you use this data.
DOI: 10.6084/m9.figshare.8317085.v5
title: AIBECS-OCIM0.1

description: This file contains the circulation output and grid information from the Ocean Circulation Inverse Model (OCIM) version 0.1 [DeVries and Primeau, 2011; Primeau et al., 2013].<br>The data was converted for use by the Algebraic Implicit Biogeochemical Element Cycling System (AIBECS).<br>References: <br>- Primeau, F. W., Holzer, M., and DeVries, T. ( 2013), Southern Ocean nutrient trapping and the efficiency of the biological pump, <i>J. Geophys. Res. Oceans</i>, 118, 2547– 2564, doi:10.1002/jgrc.20181. - DeVries, T. and F. Primeau, 2011: Dynamically and Observationally Constrained Estimates of Water-Mass Distributions and Ages in the Global Ocean. <i>J. Phys. Oceanogr.,</i> <b>41</b>, 2381–2401, https://doi.org/10.1175/JPO-D-10-05011.1<br>- Benoit Pasquier. (2019, May 23). AIBECS.jl: The ideal tool for exploring global marine biogeochemical cycles (v0.2.0). Zenodo. http://doi.org/10.5281/zenodo.3192180<br>8 Jun 2021 update: add JLD2 version<br>
DOI: 10.6084/m9.figshare.28407431.v2
title: Epigenetic Modulation of Cisplatin Sensitivity by the M6A-Linked ceRNA Network in Non-Small Cell Lung Cancer

description: Epigenetic Modulation of Cisplatin Sensitivity by the M6A-Linked ceRNA Network in Non-Small Cell Lung Cancer
DOI: 10.6084/m9.figshare.20461875.v1
title: Script for Quechua Collao Corpus

description: Script used for the Quechua Collao Corpus in https://figshare.com/articles/media/Quechua_Collao_for_Speech_Emotion_Recognition/20292516. Contains sets of words and sentences written in Quechua Collao for 9 emotions.
DOI: 10.6084/m9.figshare.27055057.v1
title: Marchnatia quadrata genome and annotation.

description: This data set contains the chromsomal-scale genome assembly of the liverwort, Marchnatia quadrata, and ist genome annotation.
DOI: 10.6084/m9.figshare.5701408.v1
title: Additional file 5: of Spatial pattern in stress drops of moderate-sized earthquakes on the Pacific Plate off the south-east of Hokkaido, Japan: implications for the heterogeneity of frictional properties

description: results_S. (TXT 54 kb)
DOI: 10.21954/ou.rd.22123762.v1
title: RAW_SmallRingTensileTest_StainlessSteel316L_ExtensionRate1_5mmMin

description: This is a part of the test dataset (Digital Image Correlation Images and CSV data) that describes the experiments done at The Open University for the Small Ring Tensile Testing of SS316L performed at various displacement rates. Unprocessed images (.NEF format) start with the prefix 'RAW' while processed images (.TIF format) start with the prefix 'CLEAN'. The following letters after that describe the test type (Small Ring Test or Uniaxial Test), followed by the material. Lastly, after the material, the crosshead extension rate is described. For instance, 'Extension Rate0_3mmMin' refers to an extension rate of 0.3 mm/min and so on. The 'RAW' folders also contain the unprocessed CSV files. The 'CLEAN' folders contain the camera information (capture interval, ISO, etc) as well as the denoised CSV experimental files. The CSV files are denoised with the help of a Butterworth filter.
DOI: 10.6084/m9.figshare.19841794.v1
title: Structures and transport properties of supercritical fluids

description: The datasets are for the structure, speciation, self-diffusivity and viscosity of SiO<sub>2</sub>–H<sub>2</sub>O and NaAlSi<sub>3</sub>O<sub>8</sub>–H<sub>2</sub>O systems.
DOI: 10.5517/ccdc.csd.cc234rfg
title: CCDC 1940985: Experimental Crystal Structure Determination

description: Related Article: Sukriti Mukherjee, Noor Salam, Somnath Khanra, Sisir Lohar, Debasis Das|2025|Inorg.Chim.Acta|583|122676|doi:10.1016/j.ica.2025.122676
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.23589351.v1
title: <strong>Rapid structural remodeling of peripheral taste fibers is independent of taste cell turnover</strong>

description: Arbors imaged in individual taste buds from living mice each 12 hours for 10 days.
DOI: 10.6084/m9.figshare.7461557.v1
title: Supplementary Material for: A 2018 European Thyroid Association Survey on the Use of Selenium Supplementation in Graves’ Hyperthyroidism and Graves’ Orbitopathy

description: <b><i>Objective:</i></b> Selenium (Se) supplementation has been suggested in the treatment of Graves’ disease (GD). We sought to investigate Se prescription patterns for GD across European countries. <b><i>Methods:</i></b> Members of the European Thyroid Association were invited to participate in an online survey investigating the use of Se in GD either without or with orbitopathy (GO). Of 872 invited members, 244 (28%) completed the survey. After exclusion of basic scientists and non-European members, 197 responses were retrieved out of clinical trials (nearly half of clinician members), of whom 61 do not use Se. Thus, 136 respondents remained for further analyses. <b><i>Results:</i></b> Among the 136 analyzed respondents, most (64.7%) were not aware of the Se status in their populations, did not assess Se levels (78.7%), nor considered iodine status (74.3%). In GD without GO, 38.2% recommend Se supplementation (“sometimes” [27.2%], “frequently” [5.9%] or “always” [5.1%]). When GO occurs, 94.1% recommend Se supplementation (“sometimes” [39%], “frequently” [30.1%] or “always” [25%]). Of these, 60.1% recommend Se as an alternative to watchful waiting in patients with mild ocular involvement and 44.9% as an adjuvant to the established treatment modalities in patients with moderate to severe ocular involvement. <b><i>Conclusions:</i></b> In Graves’ hyperthyroidism without GO, 38.2% of ETA (European Thyroid Association) members recommend Se supplementation. Conversely, Se is recommended by the majority of respondents in GO, both in patients with mild and moderate to severe ocular involvement. This clinical practice is partially in disagreement with current European treatment guidelines that recommend Se as a 6-month treatment in mild GO only.
DOI: 10.6084/m9.figshare.11962419.v1
title: Supplementary Material for: Prognostic Impact of Postoperative Complications following Salvage Esophagectomy for Esophageal Cancer after Definitive Chemoradiotherapy

description: <b><i>Background:</i></b> Recent studies have reported that the occurrence of postoperative complications after esophagectomy for esophageal cancer has a negative impact on long-term survival. Although salvage esophagectomy is associated with higher rates of morbidity and mortality, the impact of postoperative complications on long-term survival following salvage esophagectomy has not been fully investigated. <b><i>Methods:</i></b> We retrospectively analyzed 73 patients with thoracic esophageal cancer who underwent salvage esophagectomy between January 1997 and December 2017 after definitive chemoradiotherapy. We investigated the clinical impact of postoperative complications on long-term survival after salvage esophagectomy. <b><i>Results:</i></b> Postoperative complications, pulmonary complications, and anastomotic leakage occurred in 34 (47%), 14 (13%), and 14 (19%) of the patients, respectively. Patients with complications had significantly poorer survival than patients who did not have complications (HR [hazard ratio], 2.06; <i>p</i> = 0.017), but there were no significant differences in overall survival between patients with and those without pulmonary complications or anastomotic leakage (HR, 1.48, <i>p</i> = 0.318, and HR, 1.37, <i>p</i> = 0.377, respectively). Multivariate analysis revealed that pathological T3–4 disease (HR, 4.63; <i>p</i> = 0.001), residual disease (HR, 5.09; <i>p</i> = 0.001), and postoperative complications (HR, 3.85; <i>p</i> = 0.001) were significant independent prognostic factors. In particular, the frequency of death from other diseases among patients with postoperative complications was nonsignificantly higher than among patients without postoperative complications (26 vs. 10%; <i>p</i> = 0.071). <b><i>Conclusion:</i></b> The occurrence of complications leads to a poor prognosis for patients with esophageal cancer after salvage esophagectomy. Prevention of postoperative complications and long-term postoperative general supportive care might be important for improving patients’ prognosis.
DOI: 10.6084/m9.figshare.20226009.v1
title: Supplementary Material for: Preliminary Study of Genome-Wide Association Identified Novel Susceptibility Genes for Hemorheological Indexes in a Chinese Population

description: <b><i>Background:</i></b> Genome-wide association studies for various hemorheological characteristics have not been reported. We aimed to identify genetic loci associated with hemorheological indexes in a cohort of healthy Chinese Han individuals. <b><i>Methods:</i></b> Genotyping was performed using Applied Biosystems Axiom™ Precision Medicine Diversity Array in 838 individuals, and 6,423,076 single nucleotide polymorphisms were available for genotyping. The relations were examined in an additive genetic model using mixed linear regression and combined with identical by descent matrix. <b><i>Results:</i></b> We identified 38 genetic loci (<i>p</i> &lt; 5 × 10<sup>−6</sup>) related to hemorheological traits. In which, <i>LOC102724502</i>-<i>OLIG2</i> rs28371438 was related to the levels of nd30 (<i>p</i> = 8.58 × 10<sup>−07</sup>), nd300 (<i>p</i> = 1.89 × 10<sup>−06</sup>), erythrocyte rigidity (<i>p</i> = 1.29 × 10<sup>−06</sup>), assigned viscosity (<i>p</i> = 6.20 × 10<sup>−08</sup>) and whole blood high cut relative (<i>p</i> = 7.30 × 10<sup>−08</sup>). The association of <i>STK32B</i> rs4689231 for nd30 (<i>p</i> = 3.85 × 10<sup>−06</sup>) and nd300 (<i>p</i> = 2.94 × 10<sup>−06</sup>) and <i>GTSCR1</i>-LINC01541 rs11661911 for erythrocyte rigidity (<i>p</i> = 9.93 × 10<sup>−09</sup>) and whole blood high cut relative (<i>p</i> = 2.09 × 10<sup>−07</sup>) was found. <i>USP25</i>-<i>MIR99AHG</i> rs1297329 was associated with erythrocyte rigidity (<i>p</i> = 1.81 × 10<sup>−06</sup>) and erythrocyte deformation (<i>p</i> = 1.14 × 10<sup>−06</sup>). Moreover, the association of <i>TMEM232</i>-<i>SLC25A46</i> rs3985087 and <i>LINC00470</i>-<i>METTL4</i> rs9966987 for fibrinogen (<i>p</i> = 1.31 × 10<sup>−06</sup> and <i>p</i> = 4.29 × 10<sup>−07</sup>) and plasma viscosity (<i>p</i> = 1.01 × 10<sup>−06</sup> and <i>p</i> = 4.59 × 10<sup>−07</sup>) was found. <b><i>Conclusion:</i></b> These findings may represent biological candidates for hemorheological indexes and contribute to hemorheological study.
DOI: 10.6084/m9.figshare.28303301.v1
title: <b>How STARA Technology Application Shapes Employees’ Innovative Behavior</b>

description: With the application of intelligent technology, artificial intelligence, robotics, and algorithms (STARA) in workplace settings, creative work has become increasingly important for humans. While STARA has the potential to enhance employees’ innovative behavior, there is also evidence suggesting that it may have negative impacts on employees’ mental health, thereby weakening their innovative behavior.
DOI: 10.17894/ucph.bbb2b04c-f43f-47e5-9bee-43686d58b52a
title: calc_PME
DOI: 10.6084/m9.figshare.13643252.v1
title: MedSeg Liver segments dataset

description: In total 10 cases segmented with liver segments 1-8.Free to use and download. <br>Check out our 5 segment model at www.medseg.ai<br>Case 1 derived from TCIA, view their data usage policy and reference here: https://wiki.cancerimagingarchive.net/display/Public/TCGA-LIHC#03f8abb1c83847809d5dd5a6acf0493cCase 2-10 derived from Decathlon's dataset, see details and reference here: https://arxiv.org/abs/1902.09063<br><br>
DOI: 10.6084/m9.figshare.17086139.v1
title: Flowering phenology data

description: Phenological assessment of selected specimens of vascular plants from the Trondheim herbariumFull methdological details are given in Appendix A.<br>
DOI: 10.6084/m9.figshare.3562314.v1
title: Appendix A. Scaled displacement (i.e., sensitivity) of food web and ecosystem properties in response to a nutrient pulse perturbation.

description: Scaled displacement (i.e., sensitivity) of food web and ecosystem properties in response to a nutrient pulse perturbation.
DOI: 10.6084/m9.figshare.21069775.v1
title: Supplementary Material for: Supplemental Oxygen Treats Periodic Breathing without Effects on Sleep in Late-Preterm Infants

description: <b><i>Background:</i></b> The effect of supplemental oxygen on sleep has not been studied in preterm infants. <b><i>Methods:</i></b> We studied 18 stable late-preterm infants with observed periodic breathing at a median gestational age of 36 weeks. Polysomnography was performed on room air and on 25% oxygen-enriched ambient air. <b><i>Results:</i></b> Supplemental oxygen did not affect sleep stage distribution, sleep efficiency, the frequency of sleep stage transitions, the appearance of rapid-eye movement (REM) sleep periods, or the high number of spontaneous arousals. The percentage in periodic breathing out of total sleep time decreased from 10% (interquartile range [IQR] 5–9%) on room air to 1% (IQR 0–3%) (<i>p</i> &lt; 0.001) on supplemental oxygen. Also, the number of central apneas decreased from 48 (IQR 32–68) to 23 (IRQ 15–32) per hour (<i>p</i> &lt; 0.001), and the number of oxygen desaturations of a minimum 3% from 38 (IQR 29–74) to 10 (IQR 5–24) per hour (<i>p</i> &lt; 0.001). On room air in non-REM sleep, the median end-tidal carbon dioxide values were systematically lower during periodic breathing at 5.1 (IQR 4.6–6.4) kPa than during stable breathing at 5.5 (4.9–5.9) kPa (<i>p</i> &lt; 0.0001). <b><i>Conclusions:</i></b> In late-preterm infants, supplemental oxygen effectively reduces periodic breathing and the number of oxygen desaturations while having no significant effect on sleep. The results support the importance of carotid body over-reactivity on the genesis of periodic breathing in preterm infants.
DOI: 10.6084/m9.figshare.24243232.v2
title: Intellectual Transparency at Work

description: This anonymized dataset 'matchedemployeessupervisors' contains 126 matched worker-supervisor dyads. For workers, data include self-ratings for honesty, love of learning, big five personality traits, intellectual transparency, teamwork, knowledge-withholding, age, gender, and education. For supervisors, data include ratings of the worker's intellectual transparency, job performance, and organizational citizenship, and answers to questions about the supervisor's age and gender. The worker's job type (full-time or part-time), sector, and length of employment are also included.Also included is an R script file with code used to compute key correlations in the data and to perform hierarchical regressions.
DOI: 10.15468/dl.xfbj4y
title: Occurrence Download

description: A dataset containing 1259 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Uncarina (Baill.) Stapf"
 ]
}

 The dataset includes 1259 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0112878-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.17109248.v1
title: count-data-diaphragm-annotated.h5ad

description: tissue-specific single-cell read count data showing the changes with parabiosis
DOI: 10.6084/m9.figshare.12827615.v2
title: TMS gene data (final)

description: The data for the TMS gene analysis accompanying the paper "Mouse Aging Cell Atlas Analysis Reveals Global and Cell Type Specific Aging Signatures", eLife, 2021.
DOI: 10.6084/m9.figshare.27854826
title: Files for 3D-printing and field laboratory assembly supplementing the manuscript <b>"An isothermal workflow for low-cost and PCR free field-based community metabarcoding</b><b>"</b> by Plewnia et al.

description: Files for 3D-printing and field laboratory assembly supplementing the manuscript <b>"An isothermal workflow for low-cost and PCR free field-based community metabarcoding</b><b>"</b><b> </b>by Plewnia et al. (Methods in Ecology and Evolution).This folder contains .stl files for 3D-printing and code needed for the assembly and functioning of the field laboratories developed in the paper mentioned above. See manuscript for details.
DOI: 10.6084/m9.figshare.27854826.v2
title: Files for 3D-printing and field laboratory assembly supplementing the manuscript <b>"An isothermal workflow for low-cost and PCR free field-based community metabarcoding</b><b>"</b> by Plewnia et al.

description: Files for 3D-printing and field laboratory assembly supplementing the manuscript <b>"An isothermal workflow for low-cost and PCR free field-based community metabarcoding</b><b>"</b><b> </b>by Plewnia et al. (Methods in Ecology and Evolution).This folder contains .stl files for 3D-printing and code needed for the assembly and functioning of the field laboratories developed in the paper mentioned above. See manuscript for details.
DOI: 10.6084/m9.figshare.24249394.v1
title: OptiBreech Care IRAS 303028 cohort interim data to 8 September 2023

description: Data available to 8 September 2023
DOI: 10.6084/m9.figshare.27854826.v1
title: Files for 3D-printing and field laboratory assembly supplementing the manuscript<b>Towards low-cost and PCR free field-based community metabarcoding</b>by Plewnia et al.

description: Files for 3D-printing and field laboratory assembly supplementing the manuscript <b>Towards low-cost and PCR free field-based community metabarcoding </b>by Plewnia et al.This folder contains .stl files for 3D-printing and code needed for the assembly and functioning of the field laboratories developed in the paper mentioned above. See manuscript for details.
DOI: 10.6084/m9.figshare.21918809.v1
title: Inhibition of autophagy in microglia and macrophages exacerbates innate immune responses and worsens brain injury outcomes

description: Excessive and prolonged neuroinflammation following traumatic brain injury (TBI) contributes to long-term tissue damage and poor functional outcomes. However, the mechanisms contributing to exacerbated inflammatory responses after brain injury remain poorly understood. Our previous work showed that macroautophagy/autophagy flux is inhibited in neurons following TBI in mice and contributes to neuronal cell death. In the present study, we demonstrate that autophagy is also inhibited in activated microglia and infiltrating macrophages, and that this potentiates injury-induced neuroinflammatory responses. Macrophage/microglia-specific knockout of the essential autophagy gene <i>Becn1</i> led to overall increase in neuroinflammation after TBI. In particular, we observed excessive activation of the innate immune responses, including both the type-I interferon and inflammasome pathways. Defects in microglial and macrophage autophagy following injury were associated with decreased phagocytic clearance of danger/damage-associated molecular patterns (DAMP) responsible for activation of the cellular innate immune responses. Our data also demonstrated a role for precision autophagy in targeting and degradation of innate immune pathways components, such as the NLRP3 inflammasome. Finally, inhibition of microglial/macrophage autophagy led to increased neurodegeneration and worse long-term cognitive outcomes after TBI. Conversely, increasing autophagy by treatment with rapamycin decreased inflammation and improved outcomes in wild-type mice after TBI. Overall, our work demonstrates that inhibition of autophagy in microglia and infiltrating macrophages contributes to excessive neuroinflammation following brain injury and in the long term may prevent resolution of inflammation and tissue regeneration. <b>Abbreviations:</b><i>Becn1</i>/BECN1, beclin 1, autophagy related; CCI, controlled cortical impact; <i>Cybb</i>/CYBB/NOX2: cytochrome b-245, beta polypeptide; DAMP, danger/damage-associated molecular patterns; <i>Il1b</i>/IL1B/Il-1β, interleukin 1 beta; LAP, LC3-associated phagocytosis; <i>Map1lc3b</i>/MAP1LC3/LC3, microtubule-associated protein 1 light chain 3 beta; <i>Mefv</i>/MEFV/TRIM20: Mediterranean fever; <i>Nos2</i>/NOS2/iNOS: nitric oxide synthase 2, inducible; <i>Nlrp3</i>/NLRP3, NLR family, pyrin domain containing 3; <i>Sqstm1</i>/SQSTM1/p62, sequestosome 1; TBI, traumatic brain injury; <i>Tnf</i>/TNF/TNF-α, tumor necrosis factor; <i>Ulk1</i>/ULK1, unc-51 like kinase 1.
DOI: 10.6084/m9.figshare.25608012.v1
title: Replication Package of the Paper "Do Code Reviews Lead to Fewer Code Smells?"

description: This is the replication package of the "Do Code Reviews Lead to Fewer Code Smells?" paper of Erdem Tuna, Carolyn Seaman, and Eray Tüzün.