cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.24373/pdsp-245
title: Serum Potassium, Lab Results

description: The measurement concept set includes all serum/blood/plasma potassium labs. This code list was generated by searching all mentions of 'potassium' with 'serum', 'plasma' or 'blood' in the concept_name. Limited to the LOINC vocabulary_id. Filtered out terms like urine, fraction, renal, sodium, etc.
description: A concept set indicating that a patient received a laboratory measurement for serum potassium.
description: Developed for the Preserving Kidney Function in Children with Chronic Kidney Disease (PRESERVE) study for serum potassium lab values.
DOI: 10.24373/pdsp-85
title: Otitis Media for Tympanostomy Tube Outcomes

description: This concept set is inteded to identify patients with a diagnosis of otitis media
description: NEST R2: AventaMed - Typmpanostomy Tube Insertion Treatment Episodes: Practice Variation and Outcomes
DOI: 10.24373/pdsp-349
title: Radiologic Procedures

description: This concept set contains codes for radiologic imaging procedures, including CT scans, X-rays, and more general "Radiologic Examination" concepts.
description: This concept set is intended to identify radiologic imaging procedures.
DOI: 10.24373/pdsp-120
title: Allergies, Drug

description: This concept set is one of a set which was created en masse to evaluate Asthma as part of a study. ICD-10 and ICD-10-CM codes were requested specifically by the study PI and mapped to SNOMED by the developer.
description: Concept set intended to map drug allergy diagnoses concepts between SNOMED and ICD codes.
description: This concept set was developed for the study "Neighborhood Greenspace as a Protective Factor Against Childhood Asthma."
DOI: 10.24373/pdsp-29
title: Hypertension

description: This condition concept set includes all hypertension-related conditions. This code list was generated by taking all descendants of the SNOMED code 38341003 for Hypertension, related ICD9/10/10CM codes, and searching all mentions of 'hypertension' and 'hypertensive' in the concept_name. Removed hypertension terms related to pulmonary HTN, intracranial HTN, ocular HTN, and other types of HTN. ICD codes are included with and without decimal points, indicated by cc_decimal_removal. Note: Hypertension-related diagnoses associated with pregnancy are included.
description: This concept set is intended to identify patients with a diagnosis of hypertension.
description: Developed for the Preserving Kidney Function in Children with Chronic Kidney Disease (PRESERVE) study for diagnoses of hypertension.
DOI: 10.24373/pdsp-251
title: Absolute Neutrophil Count, Lab Results

description: This concept set contains codes used to identify ANC lab tests. It was developed for the PEDSnet Network Data Quality program. so that common lab tests like ANC could be measured and tracked for the network.
description: A concept set indicating that a patient received a laboratory measurement for absolute neutrophil count.
DOI: 10.24373/pdsp-205
title: Tonsillitis

description: This condition concept set includes all tonsillitis related conditions. This code list was generated by taking all descendants of the SNOMED code 90176007 for tonsillitis, related ICD9/10/10CM codes and searching all mentions of 'tonsillits' in the concept_name. Limited to ICD9CM, ICD10, ICD10CM and SNOMED diagnosis codes. ICD codes are included with and without decimal points, indicated by cc_decimal_removal. Filtered out concept codes including the term 'history of'.
description: This concept set is intended to identify patients with a diagnosis of tonsillitis.
description: Developed for the Preserving Kidney Function in Children with Chronic Kidney Disease (PRESERVE) study for diagnoses of tonsillitis.
DOI: 10.24373/pdsp-326.2
title: Anti-Asthmatic Agent, Drug Exposure

description: The new concept set contains asthma medications which include: combination medications (ICS and LABA), zileuton, theophylline, LTRA, LABA, ICS, SABA and Cromolyn, and asthma injections. The new concept set is a more comprehensive list (including descendants) of combination medications (ICS and LABA), zileuton, theophylline, LTRA, LABA, ICS, SABA and Cromolyn, and asthma injections. RxNorm and RxNorm extension codes and descendants were included. This medication list was partially based on an asthma severity computable phenotype published by Peer et al. (2021, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8328264/). The full concept set was not reviewed (descendants caused the list to be very large), but Dr. Jonathan Spergel and Dr. Stan Gabryszewski reviewed the concepts used to generate the list. The concept set was generated to identify patients with an indication of atopic disease, including asthma, and to identify asthma severity based on asthma medications.
description: Broad concept set intended to identify patients with an exposure to an anti-asthmatic agent to identify patient asthma severity.
description: The Researching COVID to Enhance Recovery (RECOVER) Post-Acute Sequelae of SARS-CoV-2 (PASC) Electronic Health Record (EHR) Cohort Study
DOI: 10.24373/pdsp-163
title: Acquired Acanthosis Nigricans

description: This concept set is inteded to identify patients with a diagnosis of acquired Acanthosis Nigricans.
description: Healthy Weight
DOI: 10.24373/pdsp-392
title: Oncology Specialties

description: This concept set contains specialty codes for Oncology, which was initially developed for the PRESERVE Blood Pressure Z-Score project to identify patients who had a oncology specialty visit for exclusion from the cohort. It includes combination specialties like Hematology / Oncology.
description: This concept set is intended to identify oncology specialties.
DOI: 10.24373/pdsp-237
title: Health Literacy SDOH Measure Responses

description: This concept set was developed to identify the ANSWERS to the questions that make up the Social Determinants of Health (SDOH) metrics for health literacy. These include the Single Item Literacy Screener. These elements were identified by PCORnet as part of the CDM enhancement efforts for version 7.0. They were identified by joining the concept set with the questions to the concept_relationship table and extracting concept_id_2 where relationship_id = 'Has Answer'.
description: This concept set is intended to identify the responses to the health literacy SDOH measure(s).
DOI: 10.15468/dl.3kyw95
title: Occurrence Download

description: A dataset containing 1019070 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is 0dc9c7a0-b5c6-11d9-a0b8-b8a03c50a862",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1019070 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009945-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.du4xyh
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 "TaxonKey is Brachiaria laeta"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009972-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dwx25x
title: Occurrence Download

description: A dataset containing 34687111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Geometry POLYGON((-125.64789 49.32344,-127.15736 45.75893,-118.90375 45.79277,-118.58299 49.2496,-125.64789 49.32344))",
 "HasGeospatialIssue is false",
 "Year 2008-2026"
 ]
}

 The dataset includes 34687111 records from 561 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009916-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z9m6vm
title: Occurrence Download

description: A dataset containing 397 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Operculina hamiltonii",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 397 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009975-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29469761
title: SF6 ChromHMM ZmRootTip InputBedFiles

description: Input files for chromatin state analysis of maize.
DOI: 10.6084/m9.figshare.29469761.v1
title: SF6 ChromHMM ZmRootTip InputBedFiles

description: Input files for chromatin state analysis of maize.
DOI: 10.1594/pangaea.940159
title: Glacier mass balance Mullwitzkees, Hohe Tauern, Austria, 2020/2021

description: The annual glacier mass balance of Mullwitzkees in Hohe Tauern is measured since 1.10.2006 with the direct glaciological method in the fixed date system (1.10. to 30. 09. of the following year). The accumulation of snow is measured by determination of the water equivalent in 6 snow pits, the ice ablation is measured with 15 stakes drilled into the ice. Results are the annual net mass balance in kg, the total accumulation and ablation, the glacier area and the portions of the area which are subject to ablation and accumulation, the elevation of the equilibrium line and the specific mass balance in kg/m² (= mm w.e.). The accumulation during the winter is determined by the 1 May.The project is funded by the Hydrographischer Dienst der Abteilung Wasserwirtschaft des Amtes der Tiroler Landesregierung and National Park Hohe Tauern. The measurements are carried out by the Institute of Interdisciplinary Mountain Research of the Austrian Academy of Sciences.
DOI: 10.1594/pangaea.949699
title: Soil chemical and mineralogical data from moraine chronosequences of the proglacial areas of Stein glacier (Sustenpass) and Griess glacier (Klausenpass) in the Swiss Alps

description: This dataset comprises soil chemical and mineralogical data of the moraine soil chronosequences from Sustenpass and Klausenpass in the Swiss Alps. The chronosequences span from 30 to 10,000 yrs (Sustenpass, siliceous parent material) and from 110 to 13,500 yrs (Klausenpass, calcareous parent material), respectively. Parameters include: pH (CaCl2), loss on ignition (LOI, 550°C), Corg, N. Elemental contents (measured by X-ray Fluorescence, XRF ) and calculated tau (open-system mass transport function) and mass balances for Na, Al, Mg, Si, P, K, Ca, Mn, Fe. Lastly, the bulk mineralogy of the fine earth (measured by X-ray Diffraction, XRD). Sampling was conducted in August/September 2017 at Sustenpass and Klausenpass and was part of the HILLSCAPE (Hillslope Chronosequence and Process Evolution) project's sampling campaign. pH, LOI and XRF measurements were conducted in 2017/2018 at the University of Zurich (Switzerland), the mineralogy was measured in 2020 at ETH Zurich (Switzerland), Corg and N were measured in 2020 at the University of Zurich. The calculations of the open-system mass transport function and mass balances were performed in 2021 at the University of Zurich. These data were collected to elucidate soil development in siliceous and calcareous parent materials in order to better understand the evolution of hillslope processes over time. They were described and discussed in detail in Musso et al. 2022 (doi:10.3390/geosciences12020099). For hydrological or geobotanical data from the same chronosequences, see for instance the publications of F. Maier (doi:10.1029/2021WR030223, doi:10.1029/2021WR030221, doi:10.1016/j.catena.2019.104353), K. Greinwald (doi:10.1080/15230430.2020.1859720, doi:10.1111/jvs.12993) and A. Hartmann (doi:10.5194/hess-2020-28, doi:10.5194/essd-12-3189-2020).
DOI: 10.15468/dl.a8unr3
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lepanthopsis hotteana",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009974-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.938695
title: Debris Emergence Elevations Geodatabase

description: This dataset contains estimates of debris emergence elevations for 974 debris-covered glaciers &gt; 5 km^2 in High Mountain Asia, calculated for three compositing periods: 1985-1999, 2000 - 2010, and 2013 - 2017. Composites were constructed in Google Earth Engine with Landsat imagery, with relatively cloud-free imagery and pixels that were preferentially selected for high brightness temperatures to remove biases due to cloud or snow cover. The elevation of the transition zone between ice and debris was calculated as the median elevation of pixels that for each debris-covered glacier in the Randolph Glacier Inventory (RGI V5) using Shuttle Radar Topography Mission (SRTM) elevation data and the boundary between ice and debris delineated in the composites. Also included in this dataset are the average date of acquisition and day of year of acquisition for individual glacier composites, individual glacier mass balance trends from 2000 - 2017 (m w.e./yr; Brun et al. 2017), changes in glacier velocity (Dehecq et al. 2019), and modelled estimates of future glacier change (Kraaijenbrink et al., 2017).
DOI: 10.1594/pangaea.946567
title: Seawater carbonate chemistry and whole community and functional gene changes of bioflms on marine plastic debris

description: Plastics are accumulating in the world's oceans, while ocean waters are becoming acidified by increased CO2. We compared metagenome of biofilms on tethered plastic bottles in subtidal waters off Japan naturally enriched in CO2, compared to normal ambient CO2 levels. Extending from an earlier amplicon study of bacteria, we used metagenomics to provide direct insights into changes in the full range of functional genes and the entire taxonomic tree of life in the context of the changing plastisphere. We found changes in the taxonomic community composition of all branches of life. This included a large increase in diatom relative abundance across the treatments but a decrease in diatom diversity. Network complexity among families decreased with acidification, showing overall simplification of biofilm integration. With acidification, there was decreased prevalence of genes associated with cell–cell interactions and antibiotic resistance, decreased detoxification genes, and increased stress tolerance genes. There were few nutrient cycling gene changes, suggesting that the role of plastisphere biofilms in nutrient processes within an acidified ocean may not change greatly. Our results suggest that as ocean CO2 increases, the plastisphere will undergo broad-ranging changes in both functional and taxonomic composition, especially the ecologically important diatom group, with possible wider implications for ocean ecology.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-07-22.
DOI: 10.1594/pangaea.966717
title: Elevation zones Jamtalferner, Silvretta, Austria, 2022/2023

description: The glacier mass balance of Jamtalferner has been measured annually since 1988/1989 with the direct/glaciological method. Winter mass balance has been determined for 1 May in all years. The mass balance records are complemented by precipitation measurements at a gauge close to the glacier tongue and climate data recorded at the village of Galtür. The project is supported by the Federal Government of Tyrol. Research results are also provided within the Environmental Education Centre Jamtal (http://www.umweltbildung-jamtal.info/). Jamtalferner is a LTER site and part of WMO's Global Crosphere Watch watch program as well as a WGMS benchmark glacier.
DOI: 10.1594/pangaea.965738
title: Glacier mass and area changes on the Kenai Peninsula, Alaska, 1986–2016

description: Several studies reported glaciers on the Kenai Peninsula in Alaska have experienced widespread recession since the Little Ice Age Maximum. However, most studies have been carried out on parts of the whole glacierized region. In this study, we estimate the glacier volume and mass change by geodetic method, derived from derived from DEMs generated from ASTER images in 2005 and the IFSAR DEM in 2014, to reveal substantial thinning and mass loss between 2005 and 2014. The ASTER data were acquired between 9 August and 14 August 2005, while the IFSAR data were acquired between 29 August and 12 September 2014.
description: This dataset is the digital elevation model (DEM) for the glaciers on Kenai Peninsula, Alaska, USA
DOI: 10.1594/pangaea.966174
title: Heatwaves experiment in the Kiel Outdoor Benthocosm 2015: macrophytes

description: The data were generated during an experiment simulating different frequencies of heatwaves (zero, one and three) in late spring/summer 2015. The experiment was carried out at the Kiel Outdoor Benthocosm (KOB) of GEOMAR Helmholtz Centre for Ocean Research Kiel, located at the Kiel Fjord. The biomass of filamentous algae was quantified from the most abundant genus occurring inside the tanks, i.e. Ceramium sp. The biomass of Zostera marina and Fucus vesiculosus was estimated from growth rates measurements carried out every 15 days. The biomass of all macrophytes was converted to carbon using specific carbon contents measured concomitantly with stable isotopes (https://doi.pangaea.de/10.1594/PANGAEA.966179). Respiration and primary production measurements were carried out on 09.08.2015 for filamentous algae, and on 12.08.2015 for Fucus vesiculosus. To execute these measurements, organisms were kept in gas-tight cylindrical chambers equipped with sensor spots for non-invasive oxygen measurements, which allowed continuous oxygen logging. Throughout the measurements, the chambers were kept inside the KOB tanks to maintain the temperature. The oxygen values were converted to carbon and normalized by the area of the tank (1.53 m2) per day. Note that the data of net primary production and respiration rates of the Z. marina were previously published (https://doi.org/10.1594/PANGAEA.904632). The carbon flux refers to the exports, i.e. biomass that was floating in the tanks, which was considered as carbon leaving (i.e. exported outside of) the system but still usable. The material to quantify the exports was collected every seven days, separated accounting for the contribution of each macrophyte group, dried at 80 °C until the biomass was constant and weighted. The dry weight was converted to carbon using the specific carbon contents measured concomitantly with stable isotopes (https://doi.pangaea.de/10.1594/PANGAEA.966179), and normalized by the area of the tank (1.53 m2) per day.
DOI: 10.1594/pangaea.938237
title: Snow depth and sea ice thickness derived from the measurements of SIMBA buoy 2019T72

description: The Snow and Ice Mass Balance Array (SIMBA) is a thermistor string type IMB (Jackson et al., 2013) which measures the environment temperature SIMBA-ET and temperature change around the thermistors after a weak heating applied to each sensor (SIMBA-HT). Totally, there were 22 SIMBAs deployed in the Arcitic Ocean over the Distributed Network (DN) and the Central Observatory during the Legs 1a, 1 and 3 of the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) campaign. The SIMBA thermistor chain is 5.12 m long, and equipped with 256 thermistors (Maxim Integrated DS28EA00) at 0.02 m spacing. Based on a manual identification method, the SIMBA-ET and SIMBA-HT were processed to yield snow depth and ice thickness. Here, we combined the two optimal methods (the ET vertical gradient and HT rise ratio) to reduce the uncertainty. To keep the consistency, we use the snow or ice surface, consequentially the snow depth, determined by the ET vertical gradient. The formations of snow ice and superposed ice are not considered in this data set. That is to say, the value of snow depth includes the layers of snow ice at two sites (2019T56 and 2019T72). The superposed ice was generally negligible. We used the HT rise ratio to determine the ice-water interface, consequentially the ice thickness. Overall, the measurement accuracy was 0.02 m for both the snow depth and ice thickness. After the snow cover melted over, the negative values for the snow depth indicate the onset of ice surface melt.
DOI: 10.1594/pangaea.940155
title: Glacier mass balance Jamtalferner, Silvretta, Austria, 2020/2021

description: The glacier mass balance of Jamtalferner has been measured annually since 1988/1989 with the direct/glaciological method. Winter mass balance has been determined for 1 May in all years. The mass balance records are complemented by precipitation measurements at a gauge close to the glacier tongue and climate data recorded at the village of Galtür. The project is supported by the Federal Government of Tyrol. Research results are also provided within the Environmental Education Centre Jamtal (http://www.umweltbildung-jamtal.info/). Jamtalferner is a LTER site and part of WMO's Global Crosphere Watch watch program as well as a WGMS benchmark glacier.
DOI: 10.1594/pangaea.940157
title: Elevation zones Jamtalferner, Silvretta, Austria, 2020/2021

description: The glacier mass balance of Jamtalferner has been measured annually since 1988/1989 with the direct/glaciological method. Winter mass balance has been determined for 1 May in all years. The mass balance records are complemented by precipitation measurements at a gauge close to the glacier tongue and climate data recorded at the village of Galtür. The project is supported by the Federal Government of Tyrol. Research results are also provided within the Environmental Education Centre Jamtal (http://www.umweltbildung-jamtal.info/). Jamtalferner is a LTER site and part of WMO's Global Crosphere Watch watch program as well as a WGMS benchmark glacier.
DOI: 10.1594/pangaea.940158
title: Elevation zones Mullwitzkees, Hohe Tauern, Austria, 2020/2021

description: The annual glacier mass balance of Mullwitzkees in Hohe Tauern is measured since 1.10.2006 with the direct glaciological method in the fixed date system (1.10. to 30. 09. of the following year). The accumulation of snow is measured by determination of the water equivalent in 6 snow pits, the ice ablation is measured with 15 stakes drilled into the ice. Results are the annual net mass balance in kg, the total accumulation and ablation, the glacier area and the portions of the area which are subject to ablation and accumulation, the elevation of the equilibrium line and the specific mass balance in kg/m² (= mm w.e.). The accumulation during the winter is determined by the 1 May.The project is funded by the Hydrographischer Dienst der Abteilung Wasserwirtschaft des Amtes der Tiroler Landesregierung and National Park Hohe Tauern. The measurements are carried out by the Institute of Interdisciplinary Mountain Research of the Austrian Academy of Sciences.