cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19103057.v1
title: Testing the role of testosterone versus estrogens in mediating reproductive transitions in female rhesus macaques

description: 1) validation_samples_LCMS.xlsxThe data in the third sheet contains measures of hormone metabolites used to create Figure 2. <br>2) study2_1_data.csvData for study 2-1. -"id" = unique number for each female-"infage" = current offspring age in days since birth-"sex" = sex of current offspring-"rep" = whether (1) or not (0) a female reproducec in the following year-"momrank" = rank of female (3: low, 2: middle, 1: high)-"momage" = age of a female in years-"estro" = measures of E1C -"etio" = measures of etiocholanolone<br>3) study2_2_data.csvData for study 2-2.<br>-"id" = unique number for each female-"ventrum" = proportion of time observed to form belly-to-belly contact with current offspring-"infage" = current offspring age in days since birth-"sex" = sex of current offspring-"rep" = whether (1) or not (0) a female reproducec in the following year-"momrank" = rank of a female (3: low, 2: middle, 1: high)-"momage" = age of a female in years-"estro" = measures of E1C -"etio" = measures of etiocholanolone-"personmean_estro" = average of E1C measures within each female -"personmean_etio" = average of etiocholanolone measures within each female
DOI: 10.5281/zenodo.4384715
title: 1918 influenza A virus alignments

description: This dataset includes nucleotide alignments for 8 viral segments from five 1918 influenza A virus strains.
DOI: 10.5281/zenodo.4384714
title: 1918 influenza A virus alignments

description: This dataset includes nucleotide alignments for 8 viral segments from five 1918 influenza A virus strains.
DOI: 10.6084/m9.figshare.19103084
title: Changes in gene expression in cells cultured in HGm or adapted to LGm or OXPHOSm - Correlations.

description: Expression of several metabolism-related transcripts in NHDF cells grown in HGm and adapted to LGm or OXPHOSm.<br>
DOI: 10.5281/zenodo.4384755
title: Kraken analysis from shotgun sequenced museum specimens via krona plot visualization

description: This dataset contains html files with krona plots from Kraken analysis on shotgun sequenced museum specimens.
DOI: 10.5281/zenodo.4384754
title: Kraken analysis from shotgun sequenced museum specimens via krona plot visualization

description: This dataset contains html files with krona plots from Kraken analysis on shotgun sequenced museum specimens.
DOI: 10.5281/zenodo.5940109
title: Dataset related to article. "Nonphosphorylated tau slows down Aβ1–42 aggregation, binds to Aβ1–42 oligomers, and reduces Aβ1–42 toxicity"

description: Figures presented in the paper and their data can be found in the corresponding prism files (www.graphpad.com).<br> The raw data and the picture files for most of the figures can be found in the folder with the corresponding figure name.
description: Funding and additional information—This work was partially supported by Fondazione Mariani with a grant to M. S. and Banca Intesa-San Paolo (grant 2014-2015) and Fondazione Regionale per la Ricerca Biomedica (Care4NeuroRare CP_20/2018) to L. D.
DOI: 10.5281/zenodo.5940108
title: Dataset related to article. "Nonphosphorylated tau slows down Aβ1–42 aggregation, binds to Aβ1–42 oligomers, and reduces Aβ1–42 toxicity"

description: Figures presented in the paper and their data can be found in the corresponding prism files (www.graphpad.com).<br> The raw data and the picture files for most of the figures can be found in the folder with the corresponding figure name.
description: Funding and additional information—This work was partially supported by Fondazione Mariani with a grant to M. S. and Banca Intesa-San Paolo (grant 2014-2015) and Fondazione Regionale per la Ricerca Biomedica (Care4NeuroRare CP_20/2018) to L. D.
DOI: 10.6084/m9.figshare.19102928
title: Changes in gene expression in cells cultured in HGm or adapted to LGm or OXPHOSm - PCA

description: Expression of several metabolism-related transcripts in NHDF cells grown in HGm and adapted to LGm or OXPHOSm.
DOI: 10.6084/m9.figshare.19102928.v1
title: Changes in gene expression in cells cultured in HGm or adapted to LGm or OXPHOSm - PCA

description: Expression of several metabolism-related transcripts in NHDF cells grown in HGm and adapted to LGm or OXPHOSm.
DOI: 10.6084/m9.figshare.17175371.v1
title: Re-assessment of the Late Jurassic eusauropod dinosaur <i>Hudiesaurus sinojapanorum</i> Dong, 1997, from the Turpan Basin, China, and the evolution of hyper-robust antebrachia in sauropods

description: <i>Hudiesaurus sinojapanorum</i> is a Late Jurassic sauropod from northwestern China that was erected on the basis of a cervicodorsal vertebra, four teeth, and a nearly complete forelimb. However, re-evaluation of this material, and comparisons with other taxa, indicate that there are few grounds for regarding these specimens as congeneric. Consequently, although we retain the vertebra as the holotype specimen of <i>Hudiesaurus</i>, the forelimb is assigned to a new taxon—<i>Rhomaleopakhus turpanensis</i>, gen. et sp. nov. The teeth previously referred to <i>Hudiesaurus</i> are poorly preserved but resemble those of several other ‘core <i>Mamenchisaurus</i>-like taxa’ (CMTs) from East Asia, such as <i>Mamenchisaurus sinocanadorum</i>. Phylogenetic analyses confirm that <i>Hudiesaurus</i> is a CMT and the sister taxon of <i>Xinjiangtitan</i>. Despite some uniquely shared features, their large size, and close geographic provenance, <i>Hudiesaurus</i> and <i>Xinjiangtitan</i> are retained as distinct genera based on their stratigraphic separation and numerous anatomical differences. <i>Rhomaleopakhus</i> is also shown to be a CMT in all analyses, being most closely related to <i>Chuanjiesaurus</i> and <i>Analong</i>. We link the convergent evolution of robust antebrachia and an enlarged olecranon in CMTs, titanosaurs, and some ornithischians (e.g., ceratopsids) to a more flexed orientation of the forearm, an enhanced role for the forelimb in locomotion, and an anterior shift in the whole-body center of mass. CMTs and titanosaurs potentially converged on a feeding strategy in which the ability to increase browse height via bipedal rearing was sacrificed in return for more efficient locomotion that improved travel between patchily distributed food sources.
DOI: 10.6084/m9.figshare.19102919
title: Mitochondrial respiration and susceptibility to mitochondrial inhibitors in NHDF cells cultured in HGm or adapted to LGm or OXPHOSm

description: Effects on NHDFs bioenergetics, evaluated by the Seahorse MitoStress test in cells cultured in HGm, LGm and OXPHOSm. <br>
DOI: 10.6084/m9.figshare.19102919.v1
title: Mitochondrial respiration and susceptibility to mitochondrial inhibitors in NHDF cells cultured in HGm or adapted to LGm or OXPHOSm

description: Effects on NHDFs bioenergetics, evaluated by the Seahorse MitoStress test in cells cultured in HGm, LGm and OXPHOSm. <br>
DOI: 10.5281/zenodo.5547227
title: CUPLR features, HMF and PCAWG samples

description: Raw features for the HMF (DR104) and PCAWG cohorts used for training and evaluating the performance of CUPLR
DOI: 10.6084/m9.figshare.19102922
title: Mitochondrial metabolism and substrate preference.

description: Evaluation of cellular capacity to oxidize TCA cycle substrates, fatty acids or other substrates in NHDF cells cultured in HGm, LGm and OXPHOSm.
DOI: 10.6084/m9.figshare.19102922.v1
title: Mitochondrial metabolism and substrate preference.

description: Evaluation of cellular capacity to oxidize TCA cycle substrates, fatty acids or other substrates in NHDF cells cultured in HGm, LGm and OXPHOSm.
DOI: 10.25625/vzjafy/i5kocj
title: replication_main.do

description: :unav
DOI: 10.25625/vzjafy/cxo7fo
title: Questionnaire and codebook.xlsx

description: :unav
DOI: 10.25625/vzjafy/dj3php
title: intervention_analysis.tab

description: :unav
DOI: 10.25625/vzjafy
title: Replication Data for: The Effect of Personalized Health Information on Preventive Behavior amongst COVID-19 Risk Groups: a Randomized Experiment in Pakistan

description: Replication Data for: The Effect of Personalized Health Information on Preventive Behavior amongst COVID-19 Risk Groups: a Randomized Experiment in Pakistan
DOI: 10.6084/m9.figshare.19102916.v1
title: Mitochondrial energy levels and network organization in NHDF cells cultured in HGm or adapted to OXPHOSm or to LGm.

description: Changes in mitochondrial area, morphology and /or polarization.<br>
DOI: 10.6084/m9.figshare.19102916
title: Mitochondrial energy levels and network organization in NHDF cells cultured in HGm or adapted to OXPHOSm or to LGm.

description: Changes in mitochondrial area, morphology and /or polarization.<br>
DOI: 10.6084/m9.figshare.19102925
title: Changes in gene expression in cells cultured in HGm or adapted to LGm or OXPHOSm

description: Expression of several metabolism-related transcripts in NHDF cells grown in HGm and adapted to LGm or OXPHOSm.<br>
DOI: 10.6084/m9.figshare.19102925.v1
title: Changes in gene expression in cells cultured in HGm or adapted to LGm or OXPHOSm

description: Expression of several metabolism-related transcripts in NHDF cells grown in HGm and adapted to LGm or OXPHOSm.<br>
DOI: 10.6084/m9.figshare.15183495.v1
title: Kidney epigenome and transcriptome-based multi-stage prioritization defines core cell types, genes and targetable mechanisms for kidney disease

description: Summary statistic data of eGFRcrea GWAS, kidney eQTL and kidney mQTL data<br>Kidney mQTL mapping was performed based on genotype and DNA methylation data of kidney samples from 443 trans-ancestry individuals (79% are of European ancestry). The significance of the top associated variants per CpG was estimated by adaptive permutation in FastQTL using the covariates above and the setting “--permute 1000”. Beta distribution-adjusted empirical p-values from FastQTL were used to calculate q-values using Storey’s q method, and a false discovery rate (FDR) threshold of ≤0.01 was applied to identify CpGs with a significant mQTL. Totally, we identified 139,313 mCpGs and 13,771,378 significant SNP-mCpG pairs<br>eGFRcrea GWAS meta-analysis was performed in 1,508,659 trans-ancestry individuals (80% are of European ancestry) by integrating five GWAS studies. We identified 90,950 variants showing genome wide significant (p &lt; 5E-8) association with eGFRcrea.<br>Kidney eQTL meta-analysis was performed in 686 trans-ancestry individuals (72% are of European ancestry) by integrating four eQTL studies. To define eGenes, we used the Storey approach to calculate q values for all associations for each gene. With significant q value (&lt; 0.01), we identified 10,430 eGenes and 1,222,250 significant SNP-gene pairs.<br><br>
DOI: 10.6084/m9.figshare.16830750.v2
title: Intradiscal vacuum phenomenon and spinal degeneration: a cross-sectional analysis of 219 subjects

description: Intradiscal vacuum phenomenon (IVP) is the collection of gas within the intervertebral discs. It has been reported with various spinal disorders. The exact role of IVP in spinal degeneration leading to low back pain (LBP) is unclear. We aimed to obtain the prevalence of IVP in patients with LBP. Our second aim was to understand whether IVP was associated with intervertebral disc degeneration (IVDD), Modic changes, and subchondral sclerosis (SS). A total of 12.450 consecutive patients with chronic LBP were evaluated in terms of having abdominal computed tomography (CT) scan concomitant with lumbar spine magnetic resonance imaging (MRI) using radiological database of three spine centers. We excluded the patients with a history of malignancy, metabolic disease, spinal infection, traumatic or osteoporotic spine fracture, and spine surgery. All lumbar levels were evaluated in terms of IVDD and Modic changes on MRI, while they were evaluated in terms of IVP and SS on CT scans. We included 219 patients. Severe IVDD, Modic changes, IVP, and SS were seen in 53.9% (<i>n</i>: 118), 38.8% (<i>n</i>: 85), 26.5% (<i>n</i>: 58), and 16% (<i>n</i>: 35) of the patients, respectively. Intradiscal vacuum phenomenon was closely associated with severe IVDD (OR: 8.204), Modic changes (OR: 3.547) and SS (OR: 4.231). Intradiscal vacuum phenomenon was closely associated with severe IVDD, Modic changes, and SS. Further prospective clinical and laboratory studies are necessary to better delineate the pathogenesis of IVP.
DOI: 10.6084/m9.figshare.16830750
title: Intradiscal vacuum phenomenon and spinal degeneration: a cross-sectional analysis of 219 subjects

description: Intradiscal vacuum phenomenon (IVP) is the collection of gas within the intervertebral discs. It has been reported with various spinal disorders. The exact role of IVP in spinal degeneration leading to low back pain (LBP) is unclear. We aimed to obtain the prevalence of IVP in patients with LBP. Our second aim was to understand whether IVP was associated with intervertebral disc degeneration (IVDD), Modic changes, and subchondral sclerosis (SS). A total of 12.450 consecutive patients with chronic LBP were evaluated in terms of having abdominal computed tomography (CT) scan concomitant with lumbar spine magnetic resonance imaging (MRI) using radiological database of three spine centers. We excluded the patients with a history of malignancy, metabolic disease, spinal infection, traumatic or osteoporotic spine fracture, and spine surgery. All lumbar levels were evaluated in terms of IVDD and Modic changes on MRI, while they were evaluated in terms of IVP and SS on CT scans. We included 219 patients. Severe IVDD, Modic changes, IVP, and SS were seen in 53.9% (<i>n</i>: 118), 38.8% (<i>n</i>: 85), 26.5% (<i>n</i>: 58), and 16% (<i>n</i>: 35) of the patients, respectively. Intradiscal vacuum phenomenon was closely associated with severe IVDD (OR: 8.204), Modic changes (OR: 3.547) and SS (OR: 4.231). Intradiscal vacuum phenomenon was closely associated with severe IVDD, Modic changes, and SS. Further prospective clinical and laboratory studies are necessary to better delineate the pathogenesis of IVP.
DOI: 10.6084/m9.figshare.16830750.v1
title: Intradiscal vacuum phenomenon and spinal degeneration: a cross-sectional analysis of 219 subjects

description: Intradiscal vacuum phenomenon (IVP) is the collection of gas within the intervertebral discs. It has been reported with various spinal disorders. The exact role of IVP in spinal degeneration leading to low back pain (LBP) is unclear. We aimed to obtain the prevalence of IVP in patients with LBP. Our second aim was to understand whether IVP was associated with intervertebral disc degeneration (IVDD), Modic changes, and subchondral sclerosis (SS). A total of 12.450 consecutive patients with chronic LBP were evaluated in terms of having abdominal computed tomography (CT) scan concomitant with lumbar spine magnetic resonance imaging (MRI) using radiological database of three spine centers. We excluded the patients with a history of malignancy, metabolic disease, spinal infection, traumatic or osteoporotic spine fracture, and spine surgery. All lumbar levels were evaluated in terms of IVDD and Modic changes on MRI, while they were evaluated in terms of IVP and SS on CT scans. We included 219 patients. Severe IVDD, Modic changes, IVP, and SS were seen in 53.9% (n: 118), 38.8% (n: 85), 26.5% (n: 58), and 16% (n: 35) of the patients, respectively. Intradiscal vacuum phenomenon was closely associated with severe IVDD (OR: 8.204), Modic changes (OR: 3.547) and SS (OR: 4.231). Intradiscal vacuum phenomenon was closely associated with severe IVDD, Modic changes, and SS. Further prospective clinical and laboratory studies are necessary to better delineate the pathogenesis of IVP.
DOI: 10.23645/epacomptox.17131652
title: Evaluation of 147 Perfluoroalkyl Substances for Immunosuppressive and other Activities Through Phenotypic Screening of Human Primary Cells

description: Dataset for "Evaluation of 147 Perfluoroalkyl Substances for Immunosuppressive and other Activities Through Phenotypic Screening of Human Primary Cells"<br>Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25<br>
DOI: 10.23645/epacomptox.17131652.v1
title: Evaluation of 147 Perfluoroalkyl Substances for Immunosuppressive and other Activities Through Phenotypic Screening of Human Primary Cells

description: Dataset for "Evaluation of 147 Perfluoroalkyl Substances for Immunosuppressive and other Activities Through Phenotypic Screening of Human Primary Cells"<br>Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25<br>
DOI: 10.5519/qd.ioe0j0jl
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (3669 records)
DOI: 10.6084/m9.figshare.19103282
title: Data for: Trait covariances in box turtles do not support pleiotropic effects of the melanocortin system on color, behavior, and stress physiology

description: Data and code associated with manuscript: "Trait covariances in box turtles do not support pleiotropic effects of the melanocortin system on color, behavior, and stress physiology" by BE Carlson and WL Robinson
DOI: 10.6084/m9.figshare.19103282.v1
title: Data for: Trait covariances in box turtles do not support pleiotropic effects of the melanocortin system on color, behavior, and stress physiology

description: Data and code associated with manuscript: "Trait covariances in box turtles do not support pleiotropic effects of the melanocortin system on color, behavior, and stress physiology" by BE Carlson and WL Robinson
DOI: 10.5281/zenodo.5940175
title: Dataset of Mordvin GOAL-cases

description: This open access dataset contains examples of the goal-oriented cases illative and lative in Mordvin languages Erzya and Moksha. The dataset consists of two parts: senses of the goal-cases (files with prefix sense) and type of the landmark noun (files with prefix LM). There is currently one dataset that includes 200 analyzed examples of each case in each language (800 examples in total). All the data is analyzed according to sense and landmark type. The data is collected from MokshEr corpus maintained by University of Turku. Sense means the semantic content that is expressed by the goal-case in a clause. The following values are found in the data: direction, location, part, place, purpose, reason, result, staying, target, and temporal. In addition, contextual variants of the senses are shown in brackets. Landmark type means what kind of entity the referent of the landmark is. There are eight categories in the data: 1D object, 2D bounded landmark, 2D unbounded landmark, 3D bounded landmark, 3D unbounded landmark, abstract landmark, institution, and temporal landmark. The senses-data is annotated for following information: The noun or relational noun phrase inflected in goal-case. The predicate as inflected in the data. Translations of both (mainly in citation form, but in predicate sometimes with some grammatical information) The sense of the goal-case in the utterance. The prototypicality of the example as a member of its sense on a scale from 1 (non- prototypical) to 5 (prototypical) NB! This assessment is based on the authors language competence and on general semantic principles, and as such should be considered only as directive. The original sentence from the corpus. Free translation. Some of the translations are done following the lexical meanings and syntactic structures of Mordvin languages, so the English is unidiomatic from time to time. The file name with which the original sentence can be located in the corpus. The landmark-data is annotated for the same information, except that there is additional information of the landmark type, and the prototypicality score is a value from 1 (non-prototypical) to 4 (prototypical) showing how prototypical the referent of the landmark is in its landmark type. Score 0 means that the prototypicality scale is not applied to the landmark type in question. Unlike in sense-data, the prototypicality in the landmark-data is based on prelinguistic spatial primitives of containment and support, as well as the human ability to recognize boundaries. The author of this dataset is Riku Erkkilä and it is published under CC-BY-NC-ND licence. The data is originally collected in the framework of Descriptive Grammar of Mordvin project (University of Helsinki) funded by Kone Foundation. If used in a publication, please refer to this publication as well as mention the original source: MokshEr V.3 (2010). Corpus of Mordvin languages. University of Turku. This dataset has been used in following publications:
DOI: 10.5281/zenodo.5940174
title: Dataset of Mordvin GOAL-cases

description: This open access dataset contains examples of the goal-oriented cases illative and lative in Mordvin languages Erzya and Moksha. The dataset consists of two parts: senses of the goal-cases (files with prefix sense) and type of the landmark noun (files with prefix LM). There is currently one dataset that includes 200 analyzed examples of each case in each language (800 examples in total). All the data is analyzed according to sense and landmark type. The data is collected from MokshEr corpus maintained by University of Turku. Sense means the semantic content that is expressed by the goal-case in a clause. The following values are found in the data: direction, location, part, place, purpose, reason, result, staying, target, and temporal. In addition, contextual variants of the senses are shown in brackets. Landmark type means what kind of entity the referent of the landmark is. There are eight categories in the data: 1D object, 2D bounded landmark, 2D unbounded landmark, 3D bounded landmark, 3D unbounded landmark, abstract landmark, institution, and temporal landmark. The senses-data is annotated for following information: The noun or relational noun phrase inflected in goal-case. The predicate as inflected in the data. Translations of both (mainly in citation form, but in predicate sometimes with some grammatical information) The sense of the goal-case in the utterance. The prototypicality of the example as a member of its sense on a scale from 1 (non- prototypical) to 5 (prototypical) NB! This assessment is based on the authors language competence and on general semantic principles, and as such should be considered only as directive. The original sentence from the corpus. Free translation. Some of the translations are done following the lexical meanings and syntactic structures of Mordvin languages, so the English is unidiomatic from time to time. The file name with which the original sentence can be located in the corpus. The landmark-data is annotated for the same information, except that there is additional information of the landmark type, and the prototypicality score is a value from 1 (non-prototypical) to 4 (prototypical) showing how prototypical the referent of the landmark is in its landmark type. Score 0 means that the prototypicality scale is not applied to the landmark type in question. Unlike in sense-data, the prototypicality in the landmark-data is based on prelinguistic spatial primitives of containment and support, as well as the human ability to recognize boundaries. The author of this dataset is Riku Erkkilä and it is published under CC-BY-NC-ND licence. The data is originally collected in the framework of Descriptive Grammar of Mordvin project (University of Helsinki) funded by Kone Foundation. If used in a publication, please refer to this publication as well as mention the original source: MokshEr V.3 (2010). Corpus of Mordvin languages. University of Turku. This dataset has been used in following publications: