cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28629785.v1
title: IEEE VIS 2025 Supplemental Materials - LVLMs and Aesthetics

description: This repository contains supplementary materials for our study on Large Vision Language Models (LVLMs) and their effectiveness in evaluating data visualizations. The dataset includes student-created visualizations, expert annotations, model evaluations, and training data used for Retrieval-Augmented Generation (RAG).The repository is organized into the following folders:📁 <b>Data Visualizations</b>Contains <b>11 student-created data visualizations</b> used in the study.Each visualization serves as input for LVLM evaluations.📁 <b>Evaluation Results</b>Includes <b>annotations</b> for each visualization from:Expert evaluation ("ground truth").10 LVLMs (both base and RAG variants).Evaluations assess alignment with visualization principles, interpretability, and coherence.📁 <b>Training Data</b>Contains Tufte & Wilkinson’s books used for Retrieval-Augmented Generation (RAG).These texts provide background knowledge for models incorporating retrieval-based improvements to the base models.
DOI: 10.3535/5fp-waq-cbz
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ert-zm7-cp1
title: Psammosteus falcatus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/djc-ypk-ypp
title: Pyrite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fm4-40s-ym3
title: lake lime

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/60d-lr1-kfa
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hlj-yff-pd5
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/add-mtz-1dr
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y7p-6fe-e9q
title: Psammosteus falcatus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22490920.v1
title: Annotation files of Nitraria sibirica genome

description: <strong>Genome sequence and salinity adaptation of the desert shrub </strong><em><strong>Nitraria sibirica</strong></em><strong> (Nitrariaceae, Sapindales)</strong>
DOI: 10.6084/m9.figshare.7006682.v1
title: Additional file 2: of Genetic characterization of inbred lines from Shaan A and B groups for identifying loci associated with maize grain yield

description: Table S2. The grain yield data of the AM126 lines. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3881383_d7.v1
title: Additional file 7: Table S2. of Tartrate-resistant acid phosphatase (TRAP/ACP5) promotes metastasis-related properties via TGFβ2/TβR and CD44 in MDA-MB-231 breast cancer cells

description: Proteins significantly regulated upon TRAP perturbation in any of the phosphoproteomics or proteomics analyses (TRAP3high vs ctrl, phospho and standard proteomics analyses; TRAP sh2 or sh3 + 4 vs scrambled shRNA, standard proteomics analysis). The column “Enriched GO term” specifies whether the protein belong to any of the GO terms that were found to be enriched in the list of regulated proteins. The column “Protein class” describes to which of the examined protein class a protein belongs to. Examined proteins classes include protein kinases, protein phosphatases, ubiquitin and UBL system enzymes and transcription factors. (XLSX 79 kb)
DOI: 10.3535/7rv-nnj-3m7
title: Psammosteus falcatus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w9a-sp4-5e1
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3526790.v1
title: Appendix A. Detailed derivation of the Price equation partition, and a worked example.

description: Detailed derivation of the Price equation partition, and a worked example.
DOI: 10.3535/1j2-tdw-4jn
title: Arsenopyrite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3h5-as0-pl9
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24534541.v2
title: Extended QM8 dataset

description: Extended-QM8 contains the excited states data: the energies and oscillator strenghts of the first 5 singlet excited states obtained at ADC(2) and TD-DFT with 38 functionals (def2-TZVP basis set).
DOI: 10.3535/bbn-6p0-n75
title: Halite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nvb-nwc-89m
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4nq-x7h-5qd
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/h5q-mzc-y5r
title: Byssacanthus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.97057.v1
title: Gliding motility assay using 8mM D2O in solution. Replicate 1/3. ROI 11/15.

description: • This is a gliding motility assay using kinesin-1 and rhodamine labeled microtubules. • The buffer used was PEM (also known as BRB80) with the inclusion of 8mM D2O. • Images were taken with an Andor Luca EMCCD camera on an Olympus IX-71 microscope using a 60x 1.42NA PlanApo objective. • This fileset is replicate 1/3 and ROI 11/15. • Images were taken to investigate speed variations of microtubules due to the inclusion of D2O in the motility assay. • The temperature of the slide was held constant at 32°C by an objective heater. Early ROIs, i.e. 1-5, have slower giding speeds due to the increasing temperature of the slide which, was prepared at room temperature before observation. After ROI 5 the gliding speed stabilizes. • Pixels lengths were measured to be 166nm/pixel using a stage micrometer. • After the files have downloaded, a simple command line entry will convert the images to a movie. Mencoder must be installed. ls &gt; list.txt | mencoder mf://@list.txt -mf w=496:h=658:fps=30:type=png -ovc lavc -lavcopts vcodec=mpeg4:mbd=2:trell -o output.avi • Upload of these files were made possible through the figshare API.
DOI: 10.3535/l8z-2eg-pbp
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/skq-qz3-zba
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14516377.v1
title: Additional file 9 of Evaluating the transcriptional fidelity of cancer models

description: Additional file 9: Table S8. LUSC CCLs subtype comparison between CCN, Yu et al, Salvadores et al.
DOI: 10.3535/e79-0tr-yz6
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0fj-kn5-nb9
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/clq-3a9-dm0
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.4121/16622566.v1
title: Data underlying the publication: Automatic discard registration in cluttered environments using deep learning and object tracking: class imbalance, occlusion, and a comparison to human review

description: Data for training and evaluation of a method for detection and counting demersal fish species in complex, cluttered and occluded environments that can be installed on the <br>conveyor belts of fishing vessels. The data mainly exists of images of fish on a conveyer belt with the corresponding annotations. This was used to train a neural network (YOLOv3) to detect and classify fish species. Because each fish is visible in multiple images, the fishes were tracked over consecutive images and the total number of fish per specie was counted. These counts were compared to human review.
DOI: 10.6084/m9.figshare.9734972.v3
title: Transcription Factor Enrichment Analysis in Enhancers Identifies EZH2 as A Susceptibility Gene for Osteoporosis Supplementary files

description: Supplement tables 1-4 for TF enrichment analysis for osteoporosis
DOI: 10.3535/ag7-fxj-lb9
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lda-8j6-2md
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25055366.v1
title: Meteorological data from CoMobility schools (COMOB-W)

description: The table associated with the data collected by SVANTEK meteorological stations
DOI: 10.3535/9vd-lqj-721
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fdd-kdp-0rq
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/d6f-w4l-7ls
title: †Euomphalus J. De C. Sowerby, 1814

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jag-h8l-xtv
title: Ptychopyge angustifrons Dalman

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r3s-xpk-ewh
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z5r-hm7-7vv
title: Lingula Bruguière, 1791

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11777598.v1
title: Business model innovation by design: a review of design’s role in business model innovation

description: In recent years, design research has increasingly focused on its use in the business model and innovation space. Despite this increased, little clarity exists surrounding the contribution of design in facilitating business model innovation outcomes. A literature review was conducted to answer the question: how does design contribute to business model innovation outcomes? 316 design and business model innovation (BMI) focused papers were reviewed, identifying five categories of design and BMI: functional design, outcome-based design, design as a methodology, design-logic orientation, and non-design. Reflection upon these 316 papers also highlighted a lack of repeatability and standardization amongst papers using design approaches to achieve BMI. This suggested a need to develop a clear, replicable design approach to achieving BMI outcomes in order to allow for the research field to build a consistent and rigorous evidence-base. Therefore, four meta-archetypes were identified for use as a first step toward building a consistent body of evidence for the contribution of design to BMI outcomes. The process describes the role of design in BMI processes, linking abstract and often external concepts, to tangible alternative business models – all in pursuit of better serving end-user needs and providing practitioners with replicable, transparent approaches to design and BMI.
DOI: 10.6084/m9.figshare.27304539.v3
title: <b>Raw data of </b><b>Moderate to severe </b><b>chronic arteriolar lesions</b><b> </b><b>i</b><b>s an </b><b>i</b><b>ndependent </b><b>r</b><b>isk </b><b>f</b><b>actor for adverse renal outcomes in IgA nephropathy</b>

description: Background The impact of chronic arteriolar lesions on the prognosis of IgA nephropathy remains controversial. This study aims to explore the value of chronic arteriolar lesions of varying degrees in predicting the prognosis of IgA nephropathy patients and analyze the associated risk factors that contribute to the formation.MethodsA retrospective analysis was conducted on 853 patients diagnosed with IgA nephropathy through renal biopsy at Guangdong Provincial Hospital of Traditional Chinese Medicine between September 1, 2005, and December 31, 2021. Eventually, a total of 574 cases were included in this study. According to the degree of chronic arteriolar lesions, the patients were divided into four groups: no lesion group (n=115), mild lesion group (n=287), moderate lesion group (n=131), and severe lesion group (n=41). Relevant clinical and pathological features and renal outcomes were recorded. Kaplan-Meier analysis, Cox proportional hazards regression, and receiver operating characteristic (ROC) curve analysis were utilized to examine the relationship between different degrees of chronic arteriolar lesions and the prognosis of IgA nephropathy. Additionally, risk factors associated with the development of moderate to severe chronic arteriolar lesions were identified. ResultsWorse clinical and pathological features were observed in the moderate to severe lesions group (P&lt;0.05). Moderate to severe chronic arteriolar lesions (aHR=3.357, 95%CI: 1.018-11.071, P=0.047), creatinine, S1, E1, T2, and C2 were identified as independent risk factors for adverse renal outcomes. Cox multivariate regression analysis on moderate to severe chronic arteriolar lesions demonstrated that creatinine, T2, and C2 were independent risk factors for adverse renal outcomes in patients with moderate to severe chronic arteriolar lesions. ConclusionModerate to severe chronic arteriolar lesions independently increases the risk of adverse renal outcomes.Keywords: chronic arteriolar lesions; Clinical pathological characteristics; IgA nephropathy; Prognosis；Risk factors
DOI: 10.3535/lml-hez-wrd
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nt2-m0k-p2x
title: Mollusca

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14480316.v4
title: Whole-exome sequencing in a cohort of high myopia patients in northwest China

description: A total of 201 potential variants were identified in 27 families: 139 ones were well cosegregated with the disease in 15 families. Sixty-two variants were not cosegregated
DOI: 10.15468/dl.m6daus
title: Occurrence Download

description: A dataset containing 2 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.basisofrecord = 'HUMAN_OBSERVATION'
 AND (occurrence.level0gid = 'IND.7_1' OR occurrence.level1gid = 'IND.7_1' OR occurrence.level2gid = 'IND.7_1' OR occurrence.level3gid = 'IND.7_1')
 AND GBIF_WITHIN('POLYGON((82.97206 23.17676,78.47639 20.98197,79.34652 15.47479,86.74261 20.55257,82.97206 23.17676))', occurrence.decimallatitude, occurrence.decimallongitude) = TRUE
 AND occurrence.hasgeospatialissues = FALSE
 AND (occurrence.taxonkey = 9227500 OR occurrence.acceptedtaxonkey = 9227500 OR occurrence.kingdomkey = 9227500 OR occurrence.phylumkey = 9227500 OR occurrence.classkey = 9227500 OR occurrence.orderkey = 9227500 OR occurrence.familykey = 9227500 OR occurrence.genuskey = 9227500 OR occurrence.specieskey = 9227500)
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 2 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009749-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/4s4-prk-2t1
title: †Pleurotomaria Defrance, 1826

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ask-ymy-zwm
title: †Phymatopleuridae Batten, 1956

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27897117.v1
title: Aggregated.xlsx

description: Data from the work "Phenotypic rebuilding after fire: understanding within-individual variability in a Mediterranean shrub".
DOI: 10.3535/mvj-kn5-bmc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qba-768-kfd
title: Lingula Bruguière, 1791

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11317601.v2
title: Database process evaluation

description: Database of the process evaluation questionnaire
DOI: 10.6084/m9.figshare.28225493.v1
title: <b>SNP calling score from individual and pooled sequencing data</b>

description: <i>Bromus auleticus</i>, a valuable forage grass native to the Pampa biome, is currently suffering genetic erosion. Therefore, it is central to assess the appropriate methodologies for developing population genomic studies and contributing to the conservation of this plant genetic resource. This study evaluated five accessions using two genotyping strategies: individual sequencing (ind-seq) and pooled sequencing (pool-seq). To compare their efficacy, was investigated the correlation between allele frequencies calculated using each approach. Geneticdiversity and population structure were also analyzed using both methods. These comparisons explicitly accounted for the potential effects of one or more of the following parameters: sample size, missing data, sequencing depth, and minor allele frequencies. Notably, the highest concordance and percentage of common SNPs between ind-seq and pool-seq was achieved using 30 to 60 plants per accession, with a maximum missing data threshold of 10% and a more tolerant minimum allele frequency threshold for pool-seq (0.01) compared to ind-seq (0.05). Reaching maximum similarity in allele frequencies also required a higher sequencing depth for pool-seq (4.8 million reads-Mr) than for ind-seq (0.9 Mr). Pools of 50 individuals yielded the highest number of polymorphic sites, averaging over 9,000 across all accessions at a sequencing depth of 4.8 Mr. Under these conditions, pool-seq consistently yielded a means across all accessions of 0.09 higher expected heterozygosity and 0.24 lower allelic richness compared to ind-seq across all accessions. The population structure detected with both methodologies showed agreement, aligning with the outcrossing nature of <i>B. auleticus</i> and the geographical origin of each accession. The average inbreeding coefficient of 0.2 indicates signs of inbreeding, highlighting the importance of conservation efforts of this valuable plant genetic resource. Based on these findings, two workflows were proposed to carry out population genomics studies of <i>Bromus auleticus</i>.
DOI: 10.6084/m9.figshare.6856994.v1
title: Measurement of nitrogen content in rice by inversion of hyperspectral reflectance data from an unmanned aerial vehicle

description: ABSTRACT: The Nitrogen content of rice leaves has a significant effect on growth quality and crop yield. We proposed and demonstrated a non-invasive method for the quantitative inversion of rice nitrogen content based on hyperspectral remote sensing data collected by an unmanned aerial vehicle (UAV). Rice canopy albedo images were acquired by a hyperspectral imager onboard an M600-UAV platform. The radiation calibration method was then used to process these data and the reflectance of canopy leaves was acquired. Experimental validation was conducted using the rice field of Shenyang Agricultural University, which was classified into 4 fertilizer levels: zero nitrogen, low nitrogen, normal nitrogen, and high nitrogen. Gaussian process regression (GPR) was then used to train the inversion algorithm to identify specific spectral bands with the highest contribution. This led to a reduction in noise and a higher inversion accuracy. Principal component analysis (PCA) was also used for dimensionality reduction, thereby reducing redundant information and significantly increasing efficiency. A comparison with ground truth measurements demonstrated that the proposed technique was successful in establishing a nitrogen inversion model, the accuracy of which was quantified using a linear fit (R2=0.8525) and the root mean square error (RMSE=0.9507). These results support the use of GPR and provide a theoretical basis for the inversion of rice nitrogen by UAV hyperspectral remote sensing.
DOI: 10.3535/pq6-jfk-17x
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zba-2a6-rgb
title: †Eotomaria Ulrich & Scoffield, 1897

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24471343.v1
title: Genome assembly and annotation of 'Changzao' and 'lizao'

description: Genome assembly and annotation of 'Changzao', including Changzao.genome.fasta, Changzao.gff3, Changzao.cds.fasta, and Changzao.pep.fasta.Genome assembly and annotation of 'Lizao', including Lizao.genome.fasta, Lizao.gff3, Lizao.cds.fasta, and Lizao.pep.fasta.Assembly and annotation of pan-genome ('Dongzao', 'Suanzao', 'Changzao', and 'Lizao'), including pan-genome.fasta, pan-genome.gff3, core-genome.fasta, core-genome.gff3, core gene ID, dispensable gene ID, and private gene ID.
DOI: 10.6084/m9.figshare.8953607.v1
title: SPOT_Reference_Database

description: This is the version 2 of our in house (Fuhrman Lab @ USC) reference genome database. It is composed from metagenomically assembled genomes from the San Pedro Ocean Time Series (SPOT).<br>
DOI: 10.3535/4jh-qgw-awx
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/84s-kpy-fz8
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14417471.v3
title: Influences of climate fluctuations on eastern Canada’s burned areas largely outweigh those of Euro-Canadian settlement since AD 1850

description: Data and R code for the paper : Influences of climate fluctuations on eastern Canada’s burned areas largely outweigh those of Euro-Canadian settlement since AD 1850(1850 to 1990)
DOI: 10.3535/psv-80v-3vw
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.