cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.sm8ntm
title: Occurrence Download

description: A dataset containing 2091 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Atriplex glauca"
 ]
}

 The dataset includes 2091 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006843-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18739/a2319s481
title: Total Sky Imager (TSI) Measurements at Summit Station, Greenland, 2010

description: ### Access
All files can be accessed and downloaded from the directory via: [http://arcticdata.io/data/10.18739/A2319S481](http://arcticdata.io/data/10.18739/A2319S481).

### Overview
This data set contains measurements from a Yankee Environmental Systems Total Sky Imager deployed at Summit Station, Greenland as part of the Integrated Characterization of Energy, Clouds, Atmospheric state, and Precipitation at Summit (ICECAPS) Project. This total sky imager points vertically and collects routine images of the hemispheric view of the sky overhead that can be used to classify the sky state, calculate cloud fraction, and provide other sky information. The total sky imager was originally installed at Summit Station by Konrad Steffen’s team and was eventually transferred to the ICECAPS team for stewardship. The instrument is owned by the University of Colorado – Boulder. Field operations support is provided by the National Science Foundation's Arctic Observing Network (AON) Program.
DOI: 10.15468/dl.8uh265
title: Occurrence Download

description: A dataset containing 437858 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Threskiornis aethiopicus",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 437858 records from 284 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006795-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfe642
title: Occurrence Download

description: A dataset containing 1169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fusconaia subrotunda",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 1169 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006844-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6v45yd
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xenurobrycon polyancistrus",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 53 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006845-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.z8w9ghxtf
title: Data from: Long-term trends of epibionts reflect Mediterranean striped dolphin abundance shifts caused by morbillivirus epidemics

description: Data on the presence and intensity of the epibiotic crustaceans
 Xenobalanus globicipitis, Syncyamus aequus, and Pennella balaenoptera on
 462 cetaceans (Delphinus delphis, Grampus griseus, Globicephala melas,
 Stenella coeruleoalba, and Tursiops truncatus) stranded along the coasts
 of Valencia (Spain, western Mediterranean) within 1980-2023. The data was
 collected by members of the Marine Zoology Unit (Universitat de Valencia,
 Spain). Permission and funding to collect stranded dolphins were given by
 the Wildlife Service of the Valencian Regional Government, Spain. These
 data were used in the research article "Long-term trends of epibionts
 reflect Mediterranean striped dolphin abundance shifts caused by
 morbillivirus epidemics", published in the Journal of Animal Ecology.
 It was used for descriptive graphs, for calculating infection parameters
 (i.e., mean intensity, prevalence, and their Confidence Intervals), for
 Generalized Additive Models (GAMs), and for estimating some input
 parameters of the mechanistic models.
description: # Data from: Long-term trends of epibionts reflect Mediterranean striped
 dolphin abundance shifts caused by morbillivirus epidemics Dataset DOI:
 [10.5061/dryad.z8w9ghxtf](https://doi.org/10.5061/dryad.z8w9ghxtf) ##
 Description of the data and file structure #### Files:
 Ten_et_al_Cetacean_epibionts_UniversityofValencia.csv ##### Description of
 variables:  * Host_species: (Cetacean) host species * Host_id: (Cetacean)
 host identification code, following the guidelines of the Marine Zoology
 Unit (University of Valencia, Spain); species scientific name initials and
 stranding date (yymmdd) * Year: Stranding year * Season: Stranding season
 (1, January-March; 2, April-June; 3, July-September; 4, October-December)
 * Outbreak: Stranding during a morbillivirus outbreak? 1, yes; 0, no *
 Host_sex: (Cetacean) host sex (female, male, or NA if undetermined) *
 Host_length_cm: (Cetacean) host total body length (from snout to fluke
 notch) in centimeters * Pennella_presence: Presence of the mesoparasitic
 copepod *Pennella balaenoptera* (syn. *P. filosa*) * Xenobalanus_presence:
 Presence of the commensal barnacle *Xenobalanus globicipitis* *
 Syncyamus_presence: Presence of the ectoparasitic amphipod *Syncyamus
 aequus* * Pennella_abundance: Intensity (number of individuals per host)
 of the mesoparasitic copepod *Pennella balaenoptera* (syn. *P. filosa*) *
 Xenobalanus_abundance: Intensity (number of individuals per host) of the
 commensal barnacle *Xenobalanus globicipitis* * Syncyamus_abundance:
 Intensity (number of individuals per host) of the ectoparasitic amphipod
 *Syncyamus aequus* ## Code/software Use Microsoft Excel, Apple Numbers,
 Google Sheets, or equivalent.
DOI: 10.15468/dl.tv9azg
title: Occurrence Download

description: A dataset containing 70704 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Canada",
 "DatasetKey is EOD – eBird Observation Dataset",
 "GadmGid is one of (CAN.1_1, CAN.1.6.10_1)",
 "Geometry POLYGON((-111.96816 49.00133,-112.44025 49.38621,-112.89527 49.54926,-113.06252 49.68057,-113.38442 49.71231,-113.60245 49.71421,-113.72758 49.12457,-113.72948 48.99375,-111.96816 49.00133))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 70704 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006786-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2k2jtk
title: Occurrence Download

description: A dataset containing 5403 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bipalium kewense",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 5403 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006846-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18739/a2z892h4h
title: Total Sky Imager (TSI) Measurements at Summit Station, Greenland, 2011

description: ### Access
All files can be accessed and downloaded from the directory via: [http://arcticdata.io/data/10.18739/A2Z892H4H](http://arcticdata.io/data/10.18739/A2Z892H4H).

### Overview
This data set contains measurements from a Yankee Environmental Systems Total Sky Imager deployed at Summit Station, Greenland as part of the Integrated Characterization of Energy, Clouds, Atmospheric state, and Precipitation at Summit (ICECAPS) Project. This total sky imager points vertically and collects routine images of the hemispheric view of the sky overhead that can be used to classify the sky state, calculate cloud fraction, and provide other sky information. The total sky imager was originally installed at Summit Station by Konrad Steffen’s team and was eventually transferred to the ICECAPS team for stewardship. The instrument is owned by the University of Colorado – Boulder. Field operations support is provided by the National Science Foundation's Arctic Observing Network (AON) Program.
DOI: 10.15468/dl.rq28tj
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is COL.2.6_2",
 "TaxonKey is Setophaga cerulea"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006847-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18603126
title: ARGs, CAZyme, MAGs, MGEs in thermokarst lake sediment profiles
DOI: 10.5281/zenodo.18603125
title: ARGs, CAZyme, MAGs, MGEs in thermokarst lake sediment profiles
DOI: 10.5281/zenodo.18600372
title: Data for Hackett et al. Investigating Enzyme Function by Geometric Matching of Catalytic Motifs

description: Enzyme Motif Miner was validated on a set of non-redundant structures sharing at most 40% sequence identity from the Protein Data Bank. Annotations of catalyitc activity were derived from the Mechanism and Catalytic Site Atlas. Selectivity was assessed across pairwise distance parameters varying between 0.7 Å and 2.0 Å.

We also used this dataset for investigating possible cases of divergence or convergence.

Analyses on two datasets of predicted protein structures were carried out:



Alphafold2 predictions of the Swiss-Prot reviewed human proteome

Novel protein folds in the CATH database as identified in the encyclopedia of domains (TED) from the entire AlphafoldDB
DOI: 10.5281/zenodo.18600371
title: Data for Hackett et al. Investigating Enzyme Function by Geometric Matching of Catalytic Motifs

description: Enzyme Motif Miner was validated on a set of non-redundant structures sharing at most 40% sequence identity from the Protein Data Bank. Annotations of catalyitc activity were derived from the Mechanism and Catalytic Site Atlas. Selectivity was assessed across pairwise distance parameters varying between 0.7 Å and 2.0 Å.

We also used this dataset for investigating possible cases of divergence or convergence.

Analyses on two datasets of predicted protein structures were carried out:



Alphafold2 predictions of the Swiss-Prot reviewed human proteome

Novel protein folds in the CATH database as identified in the encyclopedia of domains (TED) from the entire AlphafoldDB
DOI: 10.18739/a2tm7234k
title: Total Sky Imager (TSI) Measurements at Summit Station, Greenland, 2012

description: ### Access
All files can be accessed and downloaded from the directory via: [http://arcticdata.io/data/10.18739/A2TM7234K](http://arcticdata.io/data/10.18739/A2TM7234K).

### Overview
This data set contains measurements from a Yankee Environmental Systems Total Sky Imager deployed at Summit Station, Greenland as part of the Integrated Characterization of Energy, Clouds, Atmospheric state, and Precipitation at Summit (ICECAPS) Project. This total sky imager points vertically and collects routine images of the hemispheric view of the sky overhead that can be used to classify the sky state, calculate cloud fraction, and provide other sky information. The total sky imager was originally installed at Summit Station by Konrad Steffen’s team and was eventually transferred to the ICECAPS team for stewardship. The instrument is owned by the University of Colorado – Boulder. Field operations support is provided by the National Science Foundation's Arctic Observing Network (AON) Program.
DOI: 10.15468/dl.7e2hd9
title: Occurrence Download

description: A dataset containing 128364 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Xerces Society - Bumble Bee Watch"
 ]
}

 The dataset includes 128364 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006839-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mnzdch
title: Occurrence Download

description: A dataset containing 355 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lampsilis abrupta",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 355 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006848-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.21058.24004
title: Infinity-Aletheia
DOI: 10.15468/dl.549m25
title: Occurrence Download

description: A dataset containing 20660 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tamias sibiricus",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 20660 records from 172 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006849-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p4xbud
title: Occurrence Download

description: A dataset containing 281995 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Echinochloa",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 281995 records from 2292 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006800-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hqpf7h
title: Occurrence Download

description: A dataset containing 349 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Laurus novocanariensis Rivas Mart., Lousã, Fern.Prieto, E.Días, J.C.Costa & C.Aguiar"
 ]
}

 The dataset includes 349 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0186660-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rt9j6a
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alchemilla firmiana Buser",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150883-220831081235567/datasets/export for details.
DOI: 10.15468/dl.9fjbgg
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Boechera sanluisensis P.J.Alexander"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156452-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jeshyh
title: Occurrence Download

description: A dataset containing 3850 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidium bonariense L."
 ]
}

 The dataset includes 3850 records from 186 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150882-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ywn3jk
title: Occurrence Download

description: A dataset containing 243 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingCountry is China",
 "TaxonKey is Anastomus oscitans (Boddaert, 1783)"
 ]
}

 The dataset includes 243 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0170197-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ser7ry
title: Occurrence Download

description: A dataset containing 323 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-79.81149 -2.35595,-80.37985 -2.98992,-80.45563 -3.66134,-80.07672 -3.87874,-79.74518 -3.95434,-79.23366 -3.73696,-78.8737 -3.18856,-78.47585 -2.44113,-78.81686 -1.86371,-79.31891 -1.7785,-79.81149 -2.35595))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Arachnida"
 ]
}

 The dataset includes 323 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0192803-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a4a8x8
title: Occurrence Download

description: A dataset containing 2333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Anthocharis cardamines (Linnaeus, 1758)",
 "Year 1970-2000"
 ]
}

 The dataset includes 2333 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0170207-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k696af
title: Occurrence Download

description: A dataset containing 560122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anthus pratensis (Linnaeus, 1758)",
 "CoordinateUncertaintyInMeters is less than 1000",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "Year is greater than or equal to 1990",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 560122 records from 265 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150843-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dxs5kn
title: Occurrence Download

description: A dataset containing 43823 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidium coronopus (L.) Al-Shehbaz"
 ]
}

 The dataset includes 43823 records from 465 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150934-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n3r37f
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Boechera pratincola (Greene) Windham & Al-Shehbaz"
 ]
}

 The dataset includes 47 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156471-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zawyut
title: Occurrence Download

description: A dataset containing 29797 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Iguana iguana (Linnaeus, 1758)"
 ]
}

 The dataset includes 29797 records from 184 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242893-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y2k67b
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Boechera porphyrea (Wooton & Standl.) Windham, Al-Shehbaz & P.Alexander"
 ]
}

 The dataset includes 21 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156472-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w9zagx
title: Occurrence Download

description: A dataset containing 5257 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Iguana iguana (Linnaeus, 1758)"
 ]
}

 The dataset includes 5257 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242892-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s9x497
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rosa nipponensis Crép.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 98 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0192848-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pb3x7a
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Macropodium pterospermum F.Schmidt"
 ]
}

 The dataset includes 102 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150894-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zgd8pu
title: Occurrence Download

description: A dataset containing 491 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Puerto Rico",
 "TaxonKey is Elaphoglossum Schott ex J.Sm."
 ]
}

 The dataset includes 491 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066334-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.