cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/103437
title: Gravimeter data collected during research cruise MV1104 using a Bell BGM-3 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115482
title: Meteorological Station data collected during research cruise MV1104 using a SIO MET-System instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103438
title: Multibeam Echosounder data collected during research cruise MV1104 using a Kongsberg EM122 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103443
title: Winch data collected during research cruise MV1104 using a Markey DUSH-5 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103449
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise MV1105 using a Hawaii UHDAS instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103450
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise MV1105 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7451276
title: Red snapper dataset

description: Dataset for the demonstration for Gulf of Mexico red snapper. <br>
DOI: 10.7284/103451
title: Expendable Probe data collected during research cruise MV1105 using a Sippican MK21 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/106647
title: Expendable Probe data collected during research cruise MV1105 using a Sippican MK21 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7451066
title: Thesis_Dayyanah Sumodhee.pdf

description: This portfolio presents the work I have undertaken to fulfil the competencies of the Professional Doctorate in Health Psychology. The work was mainly completed within<br>my role as a Stop Smoking Practitioner in an NHS Stop Smoking setting. <br><br>1.Professional SkillsThis chapter provides an overview of my development as a Health Psychologist. A logbook discusses and exemplifies my overall professional development since commencing the Professional Doctorate. A reflexive report explores each of the core and generic professional competences integral to becoming a Health Psychologist.<br><br>2. Advanced Research MethodsThis chapter contains three pieces of research centred around the theme of e-cigarettes and smoking cessation. First, I present the quantitative study, which investigates the<br>effect of e-cigarette use on smoking behaviour using the Theory of Planned Behaviour. Second, I present the qualitative study exploring the challenges faced by Stop Smoking Practitioners when advising patients on e-cigarettes. Third, the systematic review of the association between e-cigarettes and smoking cessation is presented. Reflective commentaries describe my experience of designing, conducting and disseminating my studies.<br><br>3. Behaviour Change InterventionsTwo case studies are presented in this chapter, each accompanied by a reflective report. The case studies describe the assessment, formulation, delivery and evaluation of the intervention in two settings (face-to-face and group). In the first case study, I worked on a one-to-one basis with two patients who were trying to quit smoking. As part of this piece of work, I was assessed on my communication skills. In the second case study, I worked on a group intervention for patients who wanted to eat healthily whilst quitting smoking.<br><br>4. Teaching<br>A teaching case study and evaluation of five teaching sessions is presented in this chapter. The teaching programme was delivered to students, healthcare professionals and other members of staff in my workplace. I describe my experience of teaching and highlight how I addressed each of the following teaching components: assessing learning needs, identifying structure and content of sessions, selecting training materials, and assessing learning outcomes.<br><br>5. ConsultancyThe fifth and final chapter presents a consultancy case study accompanied by a reflective report. This project involved the evaluation of the Health Psychology Service within a Pain Management Programme in a hospital. The case study describes the planning, contracting process, conducting, delivery and evaluation of the project. <br>
DOI: 10.6084/m9.figshare.7451039
title: File S2. MTT dye-reduction cytotoxicity assay results.

description: <b>File S2. MTT dye-reduction cytotoxicity assay results. </b>Percent inhibition of cytotoxicity was calculated as described in the Methods. Shown are the results used for statistical analyses of data and for generating Figures 4-7.
DOI: 10.7284/103444
title: GNSS (Global Navigation Satellite System) data collected during research cruise MV1105 using a Furuno GP-150 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7451015
title: Source Data

description: These are the raw datasets that generated Fig. 3 - Fig. 7, Supplementary Fig. 1 - Fig. 4 in the paper entitled "Characterization of the hemodynamic response function in white matter tracts for event-related fMRI."
DOI: 10.6084/m9.figshare.7451039.v1
title: File S2. MTT dye-reduction cytotoxicity assay results.

description: <b>File S2. MTT dye-reduction cytotoxicity assay results. </b>Percent inhibition of cytotoxicity was calculated as described in the Methods. Shown are the results used for statistical analyses of data and for generating Figures 4-7.
DOI: 10.6084/m9.figshare.7450997
title: Characterization of Pacific oyster (Crassostrea gigas) proteomic response to natural environmental differences

description: Global climate change is rapidly altering coastal marine ecosystems important for food production. A comprehensive understanding of how organisms will respond to these complex environmental changes can come only from observing and studying species within their natural environment. To this end, the effects of environmental drivers — pH, dissolved oxygen content, salinity, and temperature — on Pacific oyster (Crassostrea gigas) physiology were evaluated in an outplant experiment. Sibling juvenile oysters were outplanted to eelgrass and unvegetated habitat at five different estuarine sites within the Acidification Nearshore Monitoring Network in Washington State, USA to evaluate how regional environmental drivers influence molecular physiology. Within each site, we also determined if eelgrass presence that buffered pH conditions changed the oysters’ expressed proteome. A novel, two-step, gel-free proteomic approach was used to identify differences in protein abundance in C. gigas ctenidia tissue after a 29 day outplant by 1) identifying proteins in a data independent acquisition survey step and 2) comparing relative quantities of targeted environmental response proteins using selected reaction monitoring. While there was no difference in protein abundance detected between habitats or among sites within Puget Sound, C. gigas outplanted at Willapa Bay had significantly higher abundances of antioxidant enzymes and molecular chaperones. Environmental factors at Willapa Bay, such as higher average temperature, may have driven this protein abundance pattern. These findings generate a suite of new hypotheses for lab and field experiments to compare the effects of regional conditions on physiological responses of marine invertebrates.
DOI: 10.7284/103453
title: GNSS (Global Navigation Satellite System) data collected during research cruise MV1105 using a Ashtech ADU2 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7450997.v2
title: Characterization of Pacific oyster (Crassostrea gigas) proteomic response to natural environmental differences

description: Global climate change is rapidly altering coastal marine ecosystems important for food production. A comprehensive understanding of how organisms will respond to these complex environmental changes can come only from observing and studying species within their natural environment. To this end, the effects of environmental drivers — pH, dissolved oxygen content, salinity, and temperature — on Pacific oyster (Crassostrea gigas) physiology were evaluated in an outplant experiment. Sibling juvenile oysters were outplanted to eelgrass and unvegetated habitat at five different estuarine sites within the Acidification Nearshore Monitoring Network in Washington State, USA to evaluate how regional environmental drivers influence molecular physiology. Within each site, we also determined if eelgrass presence that buffered pH conditions changed the oysters’ expressed proteome. A novel, two-step, gel-free proteomic approach was used to identify differences in protein abundance in C. gigas ctenidia tissue after a 29 day outplant by 1) identifying proteins in a data independent acquisition survey step and 2) comparing relative quantities of targeted environmental response proteins using selected reaction monitoring. While there was no difference in protein abundance detected between habitats or among sites within Puget Sound, C. gigas outplanted at Willapa Bay had significantly higher abundances of antioxidant enzymes and molecular chaperones. Environmental factors at Willapa Bay, such as higher average temperature, may have driven this protein abundance pattern. These findings generate a suite of new hypotheses for lab and field experiments to compare the effects of regional conditions on physiological responses of marine invertebrates.
DOI: 10.6084/m9.figshare.7450997.v1
title: Characterization of Pacific oyster (Crassostrea gigas) proteomic response to natural environmental differences

description: Global climate change is rapidly altering coastal marine ecosystems important for food production. A comprehensive understanding of how organisms will respond to these complex environmental changes can come only from observing and studying species within their natural environment. To this end, the effects of environmental drivers — pH, dissolved oxygen content, salinity, and temperature — on Pacific oyster (Crassostrea gigas) physiology were evaluated in an outplant experiment. Sibling juvenile oysters were outplanted to eelgrass and unvegetated habitat at five different estuarine sites within the Acidification Nearshore Monitoring Network in Washington State, USA to evaluate how regional environmental drivers influence molecular physiology. Within each site, we also determined if eelgrass presence that buffered pH conditions changed the oysters’ expressed proteome. A novel, two-step, gel-free proteomic approach was used to identify differences in protein abundance in C. gigas ctenidia tissue after a 29 day outplant by 1) identifying proteins in a data independent acquisition survey step and 2) comparing relative quantities of targeted environmental response proteins using selected reaction monitoring. While there was no difference in protein abundance detected between habitats or among sites within Puget Sound, C. gigas outplanted at Willapa Bay had significantly higher abundances of antioxidant enzymes and molecular chaperones. Environmental factors at Willapa Bay, such as higher average temperature, may have driven this protein abundance pattern. These findings generate a suite of new hypotheses for lab and field experiments to compare the effects of regional conditions on physiological responses of marine invertebrates.
DOI: 10.7284/103446
title: Gravimeter data collected during research cruise MV1105 using a Bell BGM-3 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103447
title: Gravimeter data collected during research cruise MV1105 using a Bell BGM-3 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7450826
title: File S1. VCF file with SNPs from BL3 WGS aligned to the bovine UMD3.1 reference assembly

description: <b>File S1. </b>VCF file with SNPs from BL3 WGS aligned to the bovine UMD3.1 reference assembly
DOI: 10.6084/m9.figshare.7450826.v1
title: File S1. VCF file with SNPs from BL3 WGS aligned to the bovine UMD3.1 reference assembly

description: <b>File S1. </b>VCF file with SNPs from BL3 WGS aligned to the bovine UMD3.1 reference assembly
DOI: 10.7284/115483
title: Meteorological Station data collected during research cruise MV1105 using a SIO MET-System instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7450796
title: Table S4. Alignment of CD18 sequences from Bilateria species.

description: <b>Table S4.</b> Alignment of CD18 sequences from Bilateria species.
DOI: 10.7284/103448
title: Multibeam Echosounder data collected during research cruise MV1105 using a Kongsberg EM122 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7450796.v1
title: Table S4. Alignment of CD18 sequences from Bilateria species.

description: <b>Table S4.</b> Alignment of CD18 sequences from Bilateria species.
DOI: 10.7284/103454
title: Winch data collected during research cruise MV1105 using a Markey DUSH-5 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7449374
title: Table S1. MALDI-TOF MS assay design for 14 ITGB2 missense SNPs.

description: <b>Extended Data Table S1.</b> MALDI-TOF MS assay design for 14 <i>ITGB2</i> missense SNPs.
DOI: 10.6084/m9.figshare.7449989
title: Table S2. ITGB2 genotypes recorded manually from WGS reads mapped to UMDv3.1 assembly for the USMARC Beef Cattle Diversity Panel v2.9.

description: <b>Extended Data Table S2. </b><i>ITGB2</i> genotypes recorded manually from WGS reads mapped to UMDv3.1 assembly for the USMARC Beef Cattle Diversity Panel v2.9.
DOI: 10.6084/m9.figshare.7450673
title: Table S3. Haplotype-phased genotypes (diplotypes) for ITGB2 from MALDI-TOF MS assays for 1142 cattle.

description: <b>Table S3.</b> Haplotype-phased genotypes (diplotypes) for <i>ITGB2</i> from MALDI-TOF MS assays for 1142 cattle.
DOI: 10.6084/m9.figshare.7450673.v1
title: Table S3. Haplotype-phased genotypes (diplotypes) for ITGB2 from MALDI-TOF MS assays for 1142 cattle.

description: <b>Table S3.</b> Haplotype-phased genotypes (diplotypes) for <i>ITGB2</i> from MALDI-TOF MS assays for 1142 cattle.
DOI: 10.6084/m9.figshare.7449374.v1
title: Table S1. MALDI-TOF MS assay design for 14 ITGB2 missense SNPs.

description: <b>Extended Data Table S1.</b> MALDI-TOF MS assay design for 14 <i>ITGB2</i> missense SNPs.
DOI: 10.6084/m9.figshare.7449989.v1
title: Table S2. ITGB2 genotypes recorded manually from WGS reads mapped to UMDv3.1 assembly for the USMARC Beef Cattle Diversity Panel v2.9.

description: <b>Extended Data Table S2. </b><i>ITGB2</i> genotypes recorded manually from WGS reads mapped to UMDv3.1 assembly for the USMARC Beef Cattle Diversity Panel v2.9.
DOI: 10.7284/103460
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise MV1106 using a Hawaii UHDAS instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7449368
title: Measurable residual disease in acute myeloid leukemia using flow cytometry: approaches for harmonization/standardization

description: <b>Introduction</b>: Measurable residual disease (MRD) in acute myeloid leukemia (AML) is a rapidly evolving area with many institutes embarking on it, both in academic and pharmaceutical settings. However, there is a multitude of approaches to design, perform, and report flow cytometric MRD. Together with the long-term experience needed, this makes flow cytometric MRD in AML nonstandardized and time-consuming. <b>Areas covered</b>: This paper briefly summarizes critical issues, like sample preparation and transport, markers and fluorochromes of choice, but in particular focuses on the main issues, which includes specificity and sensitivity, hereby providing a new model that may circumvent the main disadvantages of the present approaches. New approaches that may add to the value of flow cytometric MRD includes assessment of leukemia stem cells, MRD in peripheral blood, and approaches to use multidimensional image analysis. <b>Expert commentary</b>: MRD in AML requires standardization/harmonization on many aspects, for which the present paper offers possible guidelines.
DOI: 10.6084/m9.figshare.7449368.v1
title: Measurable residual disease in acute myeloid leukemia using flow cytometry: approaches for harmonization/standardization

description: <b>Introduction</b>: Measurable residual disease (MRD) in acute myeloid leukemia (AML) is a rapidly evolving area with many institutes embarking on it, both in academic and pharmaceutical settings. However, there is a multitude of approaches to design, perform, and report flow cytometric MRD. Together with the long-term experience needed, this makes flow cytometric MRD in AML nonstandardized and time-consuming. <b>Areas covered</b>: This paper briefly summarizes critical issues, like sample preparation and transport, markers and fluorochromes of choice, but in particular focuses on the main issues, which includes specificity and sensitivity, hereby providing a new model that may circumvent the main disadvantages of the present approaches. New approaches that may add to the value of flow cytometric MRD includes assessment of leukemia stem cells, MRD in peripheral blood, and approaches to use multidimensional image analysis. <b>Expert commentary</b>: MRD in AML requires standardization/harmonization on many aspects, for which the present paper offers possible guidelines.
DOI: 10.6084/m9.figshare.7449311
title: VP26_raw

description: Dataset from Ehinger, Groß et. al 2019A test battery for eye tracking comparisons. Concurrent recording of Eyelink 1000 & Pupil Labs Glasses in 15 subject in many different tasks<br>
DOI: 10.6084/m9.figshare.7449347
title: Website Review of Peer Coaching Supplemental Table 1.xlsx

description: We identified 45 website descriptions of peer coaching initiatives affiliated with US and Canadian medical schools. Supplemental Table 1 provides detailed information for each initiative, including links to initiative websites and several observation instruments.
DOI: 10.7284/103461
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise MV1106 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7449311.v1
title: VP26_raw

description: Dataset from Ehinger, Groß et. al 2019A test battery for eye tracking comparisons. Concurrent recording of Eyelink 1000 & Pupil Labs Glasses in 15 subject in many different tasks<br>
DOI: 10.6084/m9.figshare.7449347.v1
title: Website Review of Peer Coaching Supplemental Table 1.xlsx

description: We identified 45 website descriptions of peer coaching initiatives affiliated with US and Canadian medical schools. Supplemental Table 1 provides detailed information for each initiative, including links to initiative websites and several observation instruments.
DOI: 10.6084/m9.figshare.7449266
title: Genes and pathways that were enriched in T cells of rheumatoid arthritis.

description: These are supplementary data of the manuscript entitled "Multi-dimensional analysis identified rheumatoid arthritis-driving pathway in human T cell." <br><strong> </strong> Supplementary data 1. DEGs between pre- and post-TCZ treatment. Supplementary data 2. Enrichment pathways in DEGs between pre- and post-TCZ treatment Supplementary data 3. The results of GO/Enrichment analysis of clustered genes of supplementary Figure S8. Supplementary data 4. DEGs between synovial fluid of RA and peripheral blood of HC. Supplementary data 5. Enrichment pathways in DEGs between synovial fluid of RA and peripheral blood of HC. Supplementary data 6. DEGs between synovial fluid of RA and peripheral blood of untreated RA. Supplementary data 7. Enrichment pathways in DEGs between synovial fluid of RA and peripheral blood of untreated RA. Supplementary data 8. Enrichment pathways in DEGs between peripheral blood of untreated RA and HC and DEGs between peripheral blood of treated RA and untreated RA.
DOI: 10.6084/m9.figshare.7449269
title: Anti-flavi: A web platform to predict inhibitors of flaviviruses using QSAR and peptidomimetic approaches

description: Anti-flavi: A web platform to predict inhibitors of flaviviruses using QSAR and peptidomimetic approaches Akanksha Rajput and Manoj Kumar* Virology Discovery Unit and Bioinformatics Centre, Institute of Microbial Technology, Council of Scientific and Industrial Research (CSIR), Sector 39-A, Chandigarh-160036, India<br> *To whom correspondence should be addressed. Tel: +91 172 6665453; Fax: +91 172 2690585; Email: manojk@imtech.res.in Supplementary information Supplementary Figures Supplementary Figure S1. Scatter plot for Actual vs Predicted inhibition for the independent validation data set on the Random Forest developed models on A. anti-flavi chemicals and B. anti-flavi peptides Supplementary Figure S2. Residual plot for Residuals vs Predicted inhibition for the independent validation data set on the Random Forest developed models on A. anti-flavi chemicals and B. anti-flavi peptides Supplementary Figure S3. 2-Dimensional plot showing the chemical spacing of 655 anti-flavi chemicals embedded in 2D space with 58 different clusters Supplementary Table S1. Description of the top most 124 contributing features of anti-flavi chemicals Supplementary Table S2. Description of the top most 19 contributing features of anti-flavi peptides Supplementary Table S3. Actual and predicted pIC50 of 216 independent validation data set of chemicals Supplementary Table S4. Actual and predicted pIC50 of 12 independent validation data set of peptides Supplementary Table S5. The actual and predicted pIC50 of the decoy sets
DOI: 10.7284/103462
title: Expendable Probe data collected during research cruise MV1106 using a Sippican MK21 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition