cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13026/kga0-0270
title: KURIAS-ECG: a 12-lead electrocardiogram database with standardized diagnosis ontology

description: The 12-lead electrocardiogram (ECG) is the fundamental test used to evaluate
the electrophysiological state of the heart. Most previous ECG databases use
the diagnosis confirmed by experts. Therefore, ECG diagnosis is not
standardized and its quality is not uniform. In addition, there is a problem
in that the diagnosis statements differ depending on the ECG machine. This
limits the use of the database for further research, such as artificial
intelligence and clinical research. Of note, modern ECG machines provide
computerized rule-based ECG diagnoses comparable to physicians'
interpretations.

Here a high-quality 12-lead ECG database with standard vocabularies (SNOMED-CT
and OMOP-CDM), which was transformed from a computerized ECG diagnosis of ECG
machines was developed. A total of 147 ECG diagnoses were grouped into 10
categories of the Minnesota code classification. To improve the quality of the
database, ECG cases of inappropriate ECG, such as poor quality, reverse arm
ECG, and missing data, were removed. In addition, to minimize skew of the
database, 2000 ECG cases were extracted for each Minnesota classification
category. As a result of database construction, the database consisted of
20000 records for 10 categories of the Minnesota code classification from
13862 patients. The standardized database can be utilized for comprehensive
research on the diagnosis of cardiac disease and the development of robust
artificial intelligence technology.
DOI: 10.13026/kwdm-6a56
title: EntityBERT: BERT-based Models Pretrained on MIMIC-III with or without Entity-centric Masking Strategy for the Clinical Domain

description: Transformer-based neural language models have led to breakthroughs for a
variety of natural language processing (NLP) tasks. However, most models are
pretrained on general domain data. We propose a methodology to produce a model
focused on the clinical domain: continued pretraining of a model with a broad
representation of biomedical terminology (PubMedBERT) on a clinical corpus
(MIMIC-III) along with a novel entity-centric masking strategy to infuse
domain knowledge in the learning process.

We curated the MIMIC-III corpus by annotating events (including
diseases/disorders, signs/symptoms, medications, anatomical sites, and
procedures) and time expressions (e.g. "yesterday", "this weekend",
"02/31/2028"(an example date)) with special markers. Marked events and time
expressions are randomly chosen together with other words in a certain ratio
to be masked for training the entity-centric mask language model. Therefore,
the models are infused with clinical entity information and good for entity-
related clinical NLP tasks.
DOI: 10.13026/mwad-va85
title: Autonomic Aging: A dataset to quantify changes of cardiovascular autonomic function during healthy aging

description: Autonomic function regulating blood pressure and cardiac rhythm progressively
declines with increasing age. Impaired cardiovascular control promotes a
variety of age-related conditions such as dementia, or Alzheimer's disease.
This study aims to provide a database of high-resolution biological signals to
describe the effect of healthy aging on cardiovascular regulation.
Electrocardiogram and continuous non-invasive blood pressure signals were
recorded simultaneously at rest in 1,121 healthy volunteers.
DOI: 10.13026/q45h-5h59
title: VinDr-SpineXR: A large annotated medical image dataset for spinal lesions detection and classification from radiographs

description: Radiographs are used as the most critical imaging tool for identifying spine
anomalies in clinical practice [1]. The evaluation of spinal bone lesions,
however, is a challenging task for radiologists. To the best of our knowledge,
no existing studies are devoted to developing and evaluating a comprehensive
system for classifying and localizing multiple spine lesions from X-ray scans.
The lack of large-scale spine X-ray datasets with high-quality images and
human expert annotations is the key obstacle. To fill this gap, we introduce a
large-scale annotated medical image dataset for spinal lesion detection and
classification from radiographs. The dataset, called VinDr-SpineXR, contains
10,466 spine X-ray images from 5,000 studies, each of which is manually
annotated with 13 types of abnormalities by an experienced radiologist with
bounding boxes around abnormal findings. This is the largest dataset to date
that provides radiologist's bounding-box annotations for developing
supervised-learning algorithms for spine X-ray analysis.
DOI: 10.13026/s5s6-a546
title: Auditory evoked potential EEG-Biometric dataset

description: This data set consists of over **** 240 two-minute EEG **** recordings ****
obtained from 20 volunteers. Resting-state **** and auditory stimuli
experiments are included in the data. The goal is to develop an EEG-based
Biometric system.

The data includes resting-state EEG signals in both cases: eyes open and eyes
closed. The auditory stimuli part consists of six experiments; Three with in-
ear auditory stimuli and another three with bone-conducting auditory stimuli.
The three stimuli for each case are a native song, a non-native song, and
neutral music.
DOI: 10.5281/zenodo.5764573
title: Dataset: "Vibronic Coupling in Spherically Encapsulated, Diatomic Molecules: Prediction of a Renner-Teller-like Effect for Endofullerenes"

description: This datasets contains scripts and output files for the publication:<br> "Vibronic coupling in spherically encapsulated, diatomic molecules:<br> Prediction of a Renner-Teller-like effect for endofullerenes"<br> by<br> Andreas W. Hauser and Johann V. Pototschnig The zip file NO.zip contains the output files.<br> The zip file code.zip contains the python scripts.
DOI: 10.5281/zenodo.5764572
title: Dataset: "Vibronic Coupling in Spherically Encapsulated, Diatomic Molecules: Prediction of a Renner-Teller-like Effect for Endofullerenes"

description: This datasets contains scripts and output files for the publication:<br> "Vibronic coupling in spherically encapsulated, diatomic molecules:<br> Prediction of a Renner-Teller-like effect for endofullerenes"<br> by<br> Andreas W. Hauser and Johann V. Pototschnig The zip file NO.zip contains the output files.<br> The zip file code.zip contains the python scripts.
DOI: 10.6084/m9.figshare.16850583
title: The earliest chimaeriform fish from the Carboniferous of Central Russia

description: The ancestry of chimaeriform chondrichthyan fishes can be traced back to the Late Triassic (∼220 Ma). To date, only one chimaeriform suborder, the Echinochimaeroidei, has been recognized from the Palaeozoic. The origin and evolution of the chimaeriforms has been a matter of debate for more than a hundred years. This problem is aggravated by the scarcity of holomorphic fossils; the bulk of the material includes only hard parts of the jaw apparatus and other skeletal elements. Here we describe the oldest record of the Chimaeriformes, represented by tooth plates from the lower Carboniferous deposits (∼338–332 Ma) of Russia, as <i>Protochimaera mirabilis</i> gen. et sp. nov., and establish a new family and suborder based upon their particular morphological and histological features. The newly described tooth plates demonstrate a continuous layer of varitubate dentine over their oral surfaces; beak-shaped mandibular plates have been formed by fusion of a labial component of cutaneous origin to two others formed orally. Three separate vascular systems enabled the growth of these histological components. The beak and wear facets suggest a grasping-cutting feeding action and are the earliest example of this feeding mode in fishes after the placoderm extinction at the end of the Devonian. Phylogenetic analysis of the dental characters places these stem chimaeriforms as a sister group to the Chimaeroidei. http://zoobank.org/urn:lsid:zoobank.org:pub:urn:lsid:zoobank.org:pub:5593C7FE-B5B5-4922-8D32-BF0440D89192
DOI: 10.6084/m9.figshare.16850583.v1
title: The earliest chimaeriform fish from the Carboniferous of Central Russia

description: The ancestry of chimaeriform chondrichthyan fishes can be traced back to the Late Triassic (∼220 Ma). To date, only one chimaeriform suborder, the Echinochimaeroidei, has been recognized from the Palaeozoic. The origin and evolution of the chimaeriforms has been a matter of debate for more than a hundred years. This problem is aggravated by the scarcity of holomorphic fossils; the bulk of the material includes only hard parts of the jaw apparatus and other skeletal elements. Here we describe the oldest record of the Chimaeriformes, represented by tooth plates from the lower Carboniferous deposits (∼338–332 Ma) of Russia, as <i>Protochimaera mirabilis</i> gen. et sp. nov., and establish a new family and suborder based upon their particular morphological and histological features. The newly described tooth plates demonstrate a continuous layer of varitubate dentine over their oral surfaces; beak-shaped mandibular plates have been formed by fusion of a labial component of cutaneous origin to two others formed orally. Three separate vascular systems enabled the growth of these histological components. The beak and wear facets suggest a grasping-cutting feeding action and are the earliest example of this feeding mode in fishes after the placoderm extinction at the end of the Devonian. Phylogenetic analysis of the dental characters places these stem chimaeriforms as a sister group to the Chimaeroidei. http://zoobank.org/urn:lsid:zoobank.org:pub:urn:lsid:zoobank.org:pub:5593C7FE-B5B5-4922-8D32-BF0440D89192
DOI: 10.6084/m9.figshare.16985541
title: A new hadrosauriform dinosaur from the Wessex Formation, Wealden Group (Early Cretaceous), of the Isle of Wight, southern England

description: A new genus and species of non-hadrosaurid hadrosauriform dinosaur, <i>Brighstoneus simmondsi</i> gen. et sp. nov., is described from the Lower Cretaceous Wessex Formation of the Isle of Wight. The new taxon has two autapomorphies, a nasal having a modest nasal bulla with convex sides, and primary and accessory ridges on the lingual aspect of the maxillary crown. The dentary has at least 28 alveolar positions, which is the highest number recorded in an ornithopod with non-parallel sided alveoli, creating a character combination that is unique within Iguanodontia. The hadrosauriform fauna of the Barremian–Aptian Wealden Group on both the Isle of Wight and mainland England has been represented for almost a century by just two taxa, the robust <i>Iguanodon bernissartensis</i> and the more gracile <i>Mantellisaurus atherfieldensis</i>, with referred material often being fragmentary or based on unassociated elements. This discovery increases the known hadrosauriform diversity in England and, together with recent discoveries in Spain, suggests that their diversity in the upper Wealden of Europe was considerably wider than initially realized. This find also has important implications for the validity of the <i>Mantellisaurus atherfieldensis</i> hypodigm, and a reassessment of existing material is suggested. http://zoobank.org/urn:lsid:zoobank.org:pub:31F0D48F-C1DA-406E-A811-1F5937ED19F4
DOI: 10.6084/m9.figshare.16985541.v2
title: A new hadrosauriform dinosaur from the Wessex Formation, Wealden Group (Early Cretaceous), of the Isle of Wight, southern England

description: A new genus and species of non-hadrosaurid hadrosauriform dinosaur, <i>Brighstoneus simmondsi</i> gen. et sp. nov., is described from the Lower Cretaceous Wessex Formation of the Isle of Wight. The new taxon has two autapomorphies, a nasal having a modest nasal bulla with convex sides, and primary and accessory ridges on the lingual aspect of the maxillary crown. The dentary has at least 28 alveolar positions, which is the highest number recorded in an ornithopod with non-parallel sided alveoli, creating a character combination that is unique within Iguanodontia. The hadrosauriform fauna of the Barremian–Aptian Wealden Group on both the Isle of Wight and mainland England has been represented for almost a century by just two taxa, the robust <i>Iguanodon bernissartensis</i> and the more gracile <i>Mantellisaurus atherfieldensis</i>, with referred material often being fragmentary or based on unassociated elements. This discovery increases the known hadrosauriform diversity in England and, together with recent discoveries in Spain, suggests that their diversity in the upper Wealden of Europe was considerably wider than initially realized. This find also has important implications for the validity of the <i>Mantellisaurus atherfieldensis</i> hypodigm, and a reassessment of existing material is suggested. http://zoobank.org/urn:lsid:zoobank.org:pub:31F0D48F-C1DA-406E-A811-1F5937ED19F4
DOI: 10.6084/m9.figshare.16985541.v1
title: A new hadrosauriform dinosaur from the Wessex Formation, Wealden Group (Early Cretaceous), of the Isle of Wight, southern England

description: A new genus and species of non-hadrosaurid hadrosauriform dinosaur, <i>Brighstoneus simmondsi</i> gen. et sp. nov., is described from the Lower Cretaceous Wessex Formation of the Isle of Wight. The new taxon has two autapomorphies, a nasal having a modest nasal bulla with convex sides, and primary and accessory ridges on the lingual aspect of the maxillary crown. The dentary has at least 28 alveolar positions, which is the highest number recorded in an ornithopod with non-parallel sided alveoli, creating a character combination that is unique within Iguanodontia. The hadrosauriform fauna of the Barremian–Aptian Wealden Group on both the Isle of Wight and mainland England has been represented for almost a century by just two taxa, the robust <i>Iguanodon bernissartensis</i> and the more gracile <i>Mantellisaurus atherfieldensis</i>, with referred material often being fragmentary or based on unassociated elements. This discovery increases the known hadrosauriform diversity in England and, together with recent discoveries in Spain, suggests that their diversity in the upper Wealden of Europe was considerably wider than initially realized. This find also has important implications for the validity of the <i>Mantellisaurus atherfieldensis</i> hypodigm, and a reassessment of existing material is suggested. http://zoobank.org/urn:lsid:zoobank.org:pub:31F0D48F-C1DA-406E-A811-1F5937ED19F4
DOI: 10.6084/m9.figshare.17122612
title: Interdisciplinary methodology for the characterisation of a temporary paleo-wetland in loma de Úbeda (Jaén, Spain)

description: Paleo-wetlands have fragmented in archaeological times associated with human stressors. We present an interdisciplinary analysis of a past temporary paleo-wetland located at an important junction between the valleys of the Rivers Guadalquivir and Guadalimar in the province of Jaén (Eastern Andalusia, Spain). We applied a high-resolution protocol to identify the paleo-wetland used for ritual purposes during the Iron Age. Based on archaeological excavations and analyses (soil micromorphology, pollen and phytoliths analyses, optically stimulated luminescence [OSL] datings, and other techniques), we found a palaeosoil formed in a wetland environment active during the Late Holocene, dating back to the 9th century AD.
DOI: 10.6084/m9.figshare.17122612.v1
title: Interdisciplinary methodology for the characterisation of a temporary paleo-wetland in loma de Úbeda (Jaén, Spain)

description: Paleo-wetlands have fragmented in archaeological times associated with human stressors. We present an interdisciplinary analysis of a past temporary paleo-wetland located at an important junction between the valleys of the Rivers Guadalquivir and Guadalimar in the province of Jaén (Eastern Andalusia, Spain). We applied a high-resolution protocol to identify the paleo-wetland used for ritual purposes during the Iron Age. Based on archaeological excavations and analyses (soil micromorphology, pollen and phytoliths analyses, optically stimulated luminescence [OSL] datings, and other techniques), we found a palaeosoil formed in a wetland environment active during the Late Holocene, dating back to the 9th century AD.
DOI: 10.6084/m9.figshare.16661213
title: Spatiotemporal beta diversity of plankton species and their interactions in permanent and temporal waterholes in a semiarid savannah

description: Freshwater communities can vary greatly across space and time. Studying these variations (i.e., spatial and temporal beta diversity) provides fundamental information on the processes that maintain diversity and on the consequences of environmental changes on communities. Recently, drying events have been shown to strongly affect the spatial and temporal beta diversity of temperate freshwater ecosystems, but the effects of such events are mostly unknown for freshwater communities in semiarid climates frequently submitted to drying up. In addition, studies have so far focused on variations in species composition (i.e., species beta diversity), but variations in species trophic interactions (i.e., food web beta diversity) can give additional insights on how community functioning varies in space and time. We combined species and food web perspectives to explore the spatiotemporal beta diversity of plankton species and their trophic interactions in waterholes undergoing different water level regimes: either an alternation between dry and water-full states, or a permanent water-full state due to water pumping. Our results show that waterholes with artificial water pumping do not differ from natural waterholes in their contribution to spatiotemporal beta diversity. Instead, beta diversity is strongly driven by temporal variations of species composition and food web structure during the dry season, which is characterized by degraded planktonic communities with a low richness, diversity, and connectance. Species- and interaction-based approaches give complementary information on the spatiotemporal beta diversity by highlighting different planktonic communities with contrasted functioning.
DOI: 10.6084/m9.figshare.16661213.v1
title: Spatiotemporal beta diversity of plankton species and their interactions in permanent and temporal waterholes in a semiarid savannah

description: Freshwater communities can vary greatly across space and time. Studying these variations (i.e., spatial and temporal beta diversity) provides fundamental information on the processes that maintain diversity and on the consequences of environmental changes on communities. Recently, drying events have been shown to strongly affect the spatial and temporal beta diversity of temperate freshwater ecosystems, but the effects of such events are mostly unknown for freshwater communities in semiarid climates frequently submitted to drying up. In addition, studies have so far focused on variations in species composition (i.e., species beta diversity), but variations in species trophic interactions (i.e., food web beta diversity) can give additional insights on how community functioning varies in space and time. We combined species and food web perspectives to explore the spatiotemporal beta diversity of plankton species and their trophic interactions in waterholes undergoing different water level regimes: either an alternation between dry and water-full states, or a permanent water-full state due to water pumping. Our results show that waterholes with artificial water pumping do not differ from natural waterholes in their contribution to spatiotemporal beta diversity. Instead, beta diversity is strongly driven by temporal variations of species composition and food web structure during the dry season, which is characterized by degraded planktonic communities with a low richness, diversity, and connectance. Species- and interaction-based approaches give complementary information on the spatiotemporal beta diversity by highlighting different planktonic communities with contrasted functioning.
DOI: 10.5522/04/17099054
title: Set of MRI data to test the MELD prediction pipeline

description: Anonymised and defaced MRI scans (T1w and FLAIR images) from one patient with FCD from the Great Ormond Street Hospital. <br>This data enables to test the MELD prediction pipeline, and create the final MELD reports containing pictures of the native MRI data with the highlighted predictions.<br><br>More details of the project at :Spitzer, Hannah, Mathilde Ripart, Kirstie Whitaker, Antonio Napolitano, Luca De Palma, Alessandro De Benedictis, Stephen Foldes, et al. 2021. “Interpretable Surface-Based Detection of Focal Cortical Dysplasias: A MELD Study.” https://doi.org/10.1101/2021.12.13.21267721.<br><br>
DOI: 10.6084/m9.figshare.17212124.v1
title: Raw microsatellite data M. emarginatus

description: Microsatellite genotypes and Geographic coordinates of 811 individual Myotis emarginatus from across Europe from article "Conservation by trans-border cooperation: Population genetic structure and diversity of Geoffroy’s bat (<i>Myotis emarginatus</i>) at its north-western European range edge"
DOI: 10.5281/zenodo.5785930
title: External microarray datasets for manuscript entitled "Downregulated dual-specificity protein phosphatase 1 in ovarian carcinoma: a comprehensive study with multiple methods"

description: Microarrays related to ovarian carcinoma from GEO database
DOI: 10.5281/zenodo.5785929
title: External microarray datasets for manuscript entitled "Downregulated dual-specificity protein phosphatase 1 in ovarian carcinoma: a comprehensive study with multiple methods"

description: Microarrays related to ovarian carcinoma from GEO database
DOI: 10.5281/zenodo.5785903
title: External RNA-seq dataset for manuscript entitled "Downregulated dual-specificity protein phosphatase 1 in ovarian carcinoma: a comprehensive study with multiple methods"

description: RNA-seq dataset of ovarian cancer from TCGA and normal ovary from GTEx database
DOI: 10.5281/zenodo.5785902
title: External RNA-seq dataset for manuscript entitled "Downregulated dual-specificity protein phosphatase 1 in ovarian carcinoma: a comprehensive study with multiple methods"

description: RNA-seq dataset of ovarian cancer from TCGA and normal ovary from GTEx database
DOI: 10.5445/ir/1000141192
title: Parameters and KPIs from the Real Data Use Case of Dissertation

description: Aggregated and anonymized results on which graphics in associated dissertation base
DOI: 10.6084/m9.figshare.17212124
title: Geo-referenced microsatellite data from Myotis emarginatus

description: Microsatellite genotypes and Geographic coordinates of 811 individual Myotis emarginatus from across Europe from article "Conservation by trans-border cooperation: Population genetic structure and diversity of Geoffroy’s bat (<i>Myotis emarginatus</i>) at its north-western European range edge"
DOI: 10.5066/p9dn34mb
title: Digital Elevation Model (DEM) at 50 m resolution for the Everglades Depth Estimation Network (EDEN)

description: Since its inception, the Everglades Depth Estimation Network (EDEN) has used the High Accuracy Elevation Dataset (HAED) digital elevation model (DEM) to provide scientists and managers with continuous water depth surfaces, derived from interpolated water stage, on a 400 X 400 meter grid. A new, high resolution LiDAR-based DEM is available through a collaboration between Everglades National Park (ENP) and the U.S. Geological Survey (USGS) 3D Elevation Program (3DEP). This new DEM covers the southern part of the EDEN extent, including a large area of ENP and a portion of southeast Big Cypress National Preserve. It is provided at a resolution of 0.5 meters but contains data voids in surface water areas where the LiDAR was unable to provide adequate return (which can be caused by submerged vegetation or high turbidity). We have used multiple methods to fill these data voids and create a continuous high-resolution product for scientists, managers, and other EDEN users in the Greater Everglades. The DEM provided here was aggregated to a 50 m resolution to maintain an easily downloadable file size.
DOI: 10.34740/kaggle/dsv/2934460
title: COVID Vaccination in World (updated daily)