cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/37xhp-06663
title: Ecoli_Cojugation

description: These are donor E coli cells (ANB35) and recipient Ecoli cells (ANB24). These are the same  .  cells described in the Science paper (Direct visualization of horizontal gene transfer). The .  cells were mixed on the grid and then plunge frozen and imaged with cryo-ET without CLEM. .  Targets were imaged with cryo-ET randomly.
description: <strong>Tilt Series Date:</strong> 2019-02-28</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> ANB35, Hfr3000 mrfp1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 1°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -10.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> None</p>
<strong>Collaborators and Roles:</strong> The cells were sent to the Jensen lab from the lab of Ariel Lindner in Paris. These are the same . cells used in their Science paper (direct visualization of horizontal gene transfer).</p>
<strong>Purification / Growth Conditions / Treatment:</strong> ANB 35 were grown in LB while ANB24 (Recipient) in M9. I followed the same protocol . described in the Science paper described above.</p>
<strong>Sample Preparation:</strong> The donor and recipient cells were mixed on the EM grid, incubated in the vitrobot chamber with . 100% humidity and then blotted and plunge frozen.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-02-28-23/rawdata/</p>Ecoli_conjugation6.mrc,  Tilt Series (Pixel Size 0.541 nm), 2.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-02-28-23/rawdata/Ecoli_conjugation6.mrc"
        > <i class="download icon"></i> Download </a></p>

        Ecoli_conjugation6.mrc.mdoc,  41.7 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-02-28-23/rawdata/Ecoli_conjugation6.mrc.mdoc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/n50de-c2n74
title: MEF cells - Dynamin2 knockdown

description: Dynamin2 knocked down with retroviral delivery of shRNA to study mitochondrial division. grid info - DG2_grid1.
description: <strong>Tilt Series Date:</strong> 2018-11-27</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> MEF cells</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -8.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD, tomo3D</p>
<strong>Collaborators and Roles:</strong> Chun Shik from Chan lab helped design shRNA and provided protocols for viral transduction into Chan lab's MEF cells. Shrawan and Danielle made the cell line. Shrawan FIB-milled and performed ECT.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown on R2/2 quantifoil gold grids treated with 0.1 mg/mL fibronectin (10min)</p>
<strong>Sample Preparation:</strong> Cells were treated with 10 µM FCCP, plunge frozen and FIB-milled.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-11-27-9/rawdata/</p>TS5.mrc,  Tilt Series (Pixel Size 0.432 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-11-27-9/rawdata/TS5.mrc"
        > <i class="download icon"></i> Download </a></p>

        TS5_4bin_SIRTl20_rotx.rec,  Reconstruction (Pixel Size 0.0 nm), 819.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-11-27-9/3dimage_102042/TS5_4bin_SIRTl20_rotx.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.5kfchp
title: Occurrence Download

description: A dataset containing 216215 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Turnix suscitator (J.F.Gmelin, 1789), Turnix sylvaticus (Desfontaines, 1789), Turnix tanki Blyth, 1843, Anastomus oscitans (Boddaert, 1783), Ciconia boyciana Swinhoe, 1873, Ciconia ciconia (Linnaeus, 1758), Ciconia episcopus (Boddaert, 1783), Ciconia nigra (Linnaeus, 1758), Leptoptilos javanicus (Horsfield, 1821), Mycteria leucocephala (Pennant, 1769), Chalcophaps indica (Linnaeus, 1758), Columba eversmanni Bonaparte, 1856, Columba hodgsonii Vigors, 1832, Columba janthina Temminck, 1830, Columba leuconota Vigors, 1831, Columba livia J.F.Gmelin, 1789, Columba oenas Linnaeus, 1758, Columba palumbus Linnaeus, 1758, Columba pulchricollis Blyth, 1846, Columba punicea Blyth, 1842)",
 "Geometry POLYGON((73.5208333 16.6625,135.0791667 16.6625,135.0791667 53.5541667,73.5208333 53.5541667,73.5208333 16.6625))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is one of (China, Hong Kong, Macao, Chinese Taipei)"
 ]
}

 The dataset includes 216215 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006781-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22033/esgf/cmip6.4208
title: CNRM-CERFACS CNRM-ESM2-1 model output prepared for CMIP6 AerChemMIP ssp370SST-lowNTCF

description: Coupled Model Intercomparison Project Phase 6 (CMIP6) datasets: These data include all datasets published for 'CMIP6.AerChemMIP.CNRM-CERFACS.CNRM-ESM2-1.ssp370SST-lowNTCF' with the full Data Reference Syntax following the template 'mip_era.activity_id.institution_id.source_id.experiment_id.member_id.table_id.variable_id.grid_label.version'.
 
 The CNRM-ESM2-1 climate model, released in 2017, includes the following components:
 aerosol: TACTIC_v2, atmos: Arpege 6.3 (T127; Gaussian Reduced with 24572 grid points in total distributed over 128 latitude circles (with 256 grid points per latitude circle between 30degN and 30degS reducing to 20 grid points per latitude circle at 88.9degN and 88.9degS); 91 levels; top level 78.4 km), atmosChem: REPROBUS-C_v2, land: Surfex 8.0c, ocean: Nemo 3.6 (eORCA1, tripolar primarily 1deg; 362 x 294 longitude/latitude; 75 levels; top grid cell 0-1 m), ocnBgchem: Pisces 2.s, seaIce: Gelato 6.1. 
The model was run by the CNRM (Centre National de Recherches Meteorologiques, Toulouse 31057, France), CERFACS (Centre Europeen de Recherche et de Formation Avancee en Calcul Scientifique, Toulouse 31057, France) (CNRM-CERFACS) in native nominal resolutions: aerosol: 250 km, atmos: 250 km, atmosChem: 250 km, land: 250 km, ocean: 100 km, ocnBgchem: 100 km, seaIce: 100 km. 

Project: These data have been generated as part of the internationally-coordinated Coupled Model Intercomparison Project Phase 6 (CMIP6; see also GMD Special Issue: http://www.geosci-model-dev.net/special_issue590.html). The simulation data provides a basis for climate research designed to answer fundamental science questions and serves as resource for authors of the Sixth Assessment Report of the Intergovernmental Panel on Climate Change (IPCC-AR6).

CMIP6 is a project coordinated by the Working Group on Coupled Modelling (WGCM) as part of the World Climate Research Programme (WCRP). Phase 6 builds on previous phases executed under the leadership of the Program for Climate Model Diagnosis and Intercomparison (PCMDI) and relies on the Earth System Grid Federation (ESGF) and the Centre for Environmental Data Analysis (CEDA) along with numerous related activities for implementation. The original data is hosted and partially replicated on a federated collection of data nodes, and most of the data relied on by the IPCC is being archived for long-term preservation at the IPCC Data Distribution Centre (IPCC DDC) hosted by the German Climate Computing Center (DKRZ).

The project includes simulations from about 120 global climate models and around 45 institutions and organizations worldwide. - Project website: https://pcmdi.llnl.gov/CMIP6.
DOI: 10.15468/dl.49mdxf
title: Occurrence Download

description: A dataset containing 11134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Month is January",
 "StateProvince is New Brunswick",
 "Year 2024-2024"
 ]
}

 The dataset includes 11134 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046106-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2zpbc
title: Occurrence Download

description: A dataset containing 538331 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus pinaster",
 "Continent is Europe"
 ]
}

 The dataset includes 538331 records from 776 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046068-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/c89vhk
title: R/V Searcher Expedition

description: This collection contains mostly Crustacea collected from northern California to Costa Rica between 1971–1972.
DOI: 10.5281/zenodo.15641061
title: Invader photosynthesis and leaf nitrogen allocation in France, Japan, and the USA: dataset and R code

description: All data and R code necessary for running analyses associated with Griffin-Nolan et al. Version 2 has added metadata describing leaf trait columns, and Version 3 includes a revision to trait models.
DOI: 10.5281/zenodo.17654137
title: Invader photosynthesis and leaf nitrogen allocation in France, Japan, and the USA: dataset and R code

description: All data and R code necessary for running analyses associated with Griffin-Nolan et al. Version 2 has added metadata describing leaf trait columns, and Version 3 includes a revision to trait models.
DOI: 10.15468/dl.z44kun
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-113.9688 29.69913, -113.8188 29.69913, -113.8188 29.84913, -113.9688 29.84913, -113.9688 29.69913))"
 ]
}

 The dataset includes 51 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046108-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xb6z7p
title: Occurrence Download

description: A dataset containing 10004 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Month is February",
 "StateProvince is New Brunswick",
 "Year 2024-2024"
 ]
}

 The dataset includes 10004 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046111-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5883/ds-leafcham
title: Ariel H. Munoz-Sanchez, Alejandro Zaldivar-Riveron, Rafael Torres Colin, Evgeny V. Zakharov, Carlos Lopez-Vaamonde, and Antonio Hernandez-Lopez

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.15468/dl.8vr82c
title: Occurrence Download

description: A dataset containing 3119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lagopus muta",
 "Country is Austria"
 ]
}

 The dataset includes 3119 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046113-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.89sw4a
title: Occurrence Download

description: A dataset containing 143 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-113.8188 29.69913, -113.6688 29.69913, -113.6688 29.84913, -113.8188 29.84913, -113.8188 29.69913))"
 ]
}

 The dataset includes 143 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046112-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z5wcms
title: Occurrence Download

description: A dataset containing 8916 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "Geometry POLYGON((-76.12421317868522 4.541112890978184,-76.12421317868522 4.500291072265,-76.01457495553959 4.500291072265,-76.01457495553959 4.541112890978184,-76.12421317868522 4.541112890978184))"
 ]
}

 The dataset includes 8916 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046115-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.amkjjk
title: Occurrence Download

description: A dataset containing 280 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hippocamelus antisensis"
 ]
}

 The dataset includes 280 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046116-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z7dcfu
title: Occurrence Download

description: A dataset containing 696445 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Machine Observation",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 696445 records from 375 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046103-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wrwr5g
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gymnocephalus schraetzer",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046117-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uvkts8
title: Occurrence Download

description: A dataset containing 396 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gymnocephalus baloni",
 "HasCoordinate is true"
 ]
}

 The dataset includes 396 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046121-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83zapm
title: Occurrence Download

description: A dataset containing 931 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-79.09627 41.7622,-75.0521 41.7622,-75.0521 43.43867,-79.09627 43.43867,-79.09627 41.7622))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Asio flammeus",
 "Year 2024-2024"
 ]
}

 The dataset includes 931 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046120-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wug2j7
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-113.6688 29.69913, -113.5188 29.69913, -113.5188 29.84913, -113.6688 29.84913, -113.6688 29.69913))"
 ]
}

 The dataset includes 19 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046122-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3pgbg
title: Occurrence Download

description: A dataset containing 15714 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Month is March",
 "StateProvince is New Brunswick",
 "Year 2024-2024"
 ]
}

 The dataset includes 15714 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046119-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nnh3m9
title: Occurrence Download

description: A dataset containing 1176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Persicaria capitata",
 "Year 1000-2025"
 ]
}

 The dataset includes 1176 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046123-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h4mfam
title: Occurrence Download

description: A dataset containing 2849 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Graphoderus bilineatus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2849 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046125-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bwurxn
title: Occurrence Download

description: A dataset listing the 6407 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-97.84103 31.69522,-95.68067 31.69522,-95.68067 33.61481,-97.84103 33.61481,-97.84103 31.69522))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset's 6407 records were derived from 165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046105-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tvxjtk
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-113.5188 29.69913, -113.3688 29.69913, -113.3688 29.84913, -113.5188 29.84913, -113.5188 29.69913))"
 ]
}

 The dataset includes 81 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046126-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7266/9tcn4vs8
title: Water level sensor data
DOI: 10.18430/m39sko
title: X-ray diffraction data for the crystal structure of HLA-A0201 in complex with peptide LLWNGPMAVS (9SKO)
DOI: 10.15468/dl.fvffut
title: Occurrence Download

description: A dataset containing 170 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-113.3688 29.69913, -113.2188 29.69913, -113.2188 29.84913, -113.3688 29.84913, -113.3688 29.69913))"
 ]
}

 The dataset includes 170 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046128-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8eabej
title: Occurrence Download

description: A dataset containing 4817 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriophorum brachyantherum"
 ]
}

 The dataset includes 4817 records from 161 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046131-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/5be824b73254ea912c6f72b98024e205
title: Survey of Pacific Northwest public land managers science and values project, 2023

description: This dataset records survey data about public land managers who work in Oregon and Washington (Forest Service, Bureau of Land Management, Fish and Wildlife Service, National Park Service, Oregon Department of Forestry, Washington Department of Natural Resources). Data was collected in 2023 via the online survey platform Qualtrics. Data collection is complete. The dataset includes measures of managers beliefs about 1) variable density thinning of mature growth forests, 2) salvage logging of burned areas, 3) translocation of plant species from hotter and drier seed zones to adapt to climate change. It includes how managers evaluate the usefulness of scientific evidence and the soundness of action prescriptions for each of the three management issues Respondents were randomly assigned to either receive long-term or short-term studies, and positive or negative results. The dataset includes measures of sense of belonging (how much managers believe they belong at their workplace) and measures of public support/public threat (how much they believe the public understands and supports the actions they take on the landscape). The dataset includes respondent agency.
DOI: 10.15468/dl.3ncppa
title: Occurrence Download

description: A dataset containing 7999104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "OccurrenceStatus is Present",
 "Year 2000-2025"
 ]
}

 The dataset includes 7999104 records from 954 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003356-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.