cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22938797.v4
title: A global dataset for assessing nitrogen-related plant traits using drone imagery in major field crop species

description:  
Authors:
 Diogo Castilho1,2*, Danilo Tedesco3, Carlos Hernandez3, Beata E. Madari1,2, Ignacio Ciampitti3*
<br>
1 Graduate Program in Agronomy, Federal University of Goiás, Goiânia, GO, Brazil
2 Brazilian Agricultural Research Corporation (Embrapa Rice and Beans), Santo Antônio de Goiás, GO, Brazil.
3 Department of Agronomy, Kansas State University, 1712 Claflin Rd., Manhattan, KS, 66506, USA
 
A new dataset was described and summarized the state of the art in drone-based plant traits assessment, resulting from a systematic search of Scopus and Web of Science databases. This dataset contains the result of extracting data of 14 plant traits (yield [t ha-1], plant N density [g m-2], plant N concentration [%], plant N accumulation [g m-2], NUE - plant N content [kg ha-1], NNI, N uptake [kg ha-1], N rate [kg ha-1], leaf N density [g m-2], leaf N content [g m-2], leaf N concentration [%], leaf N accumulation [g m-2], canopy N content [g m-2], and biomass [t ha-1]) from 41 papers with a total of 11189 observations for 11 major crop species from 13 countries around the globe.
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Many vegetation indices derived from unmanned aerial vehicle could track the relative yield, N uptake, and leaf N concentration in wheat, cotton and rice species. This method may not only be used to evaluate the N management practices but also may have application in making in-season N management decisions. Furthermore, this dataset is relevant to develop precise and broad diagnostic of N nutritional status of wide crop species in different sites and conditions.
<br>
For more information related to this dataset or codes, please contact the corresponding author at: diogocastilho6@hotmail.com
<br>
For cite the dataset, please use:
Castilho, D., Tedesco, D.,  Hernandez, C., Madari, E. B., Ciampitti, I.   
A global dataset for assessing nitrogen-related plant traits using drone imagery in major field crop species. figshare https://figshare.com/s/177cdcd70963a415925b (2023).
DOI: 10.6084/m9.figshare.12821624.v4
title: Rainforest conversion to monocultures favours generalist ants with large colonies

description: See Material & Methods
DOI: 10.6084/m9.figshare.14811387.v1
title: Competitiveness and Complementarity in Digital Trade of G20 Countries

description: 本文选择拥有 2008 年和 2018 年数据的 38 个国家作为分析样本，构建 G20 数字贸易网络，数据来自联合国商品贸易数据库和服务贸易数据库。<br>
DOI: 10.6084/m9.figshare.28516604.v3
title: An explainable dataset linking facial phenotypes and genes to rare genetic diseases

description: FGDD, an explainable dataset collected from 509 research articles. It contains 1,147 data records encompassing 197 disease-causing genes, 437 facial phenotypes, and 211 disease entities, with 689 records have disease labels. Each data record represents a patient group and includes demographic information, variation information, and phenotype information.<b>Full papers are available at</b>: An explainable dataset linking facial phenotypes and genes to rare genetic diseases | Scientific Data<b>Please Cite: </b>Song, J., He, M., Ren, S. <i>et al.</i> An explainable dataset linking facial phenotypes and genes to rare genetic diseases. <i>Sci Data</i> <b>12</b>, 634 (2025). https://doi.org/10.1038/s41597-025-04922-z
DOI: 10.6084/m9.figshare.c.3662366_d777.v1
title: Full body CT scan of a Squatina africana (ZMA.PISC.108696)

description: This file includes 2016 DICOM files of a female Squatina africana specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber ZMA.PISC.108696. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.28122899.v1
title: Addis Ababa City Road Traffic Accident Severity Dataset

description: This dataset contains traffic accident records from Addis Ababa City, Ethiopia, spanning the years 2016 to 2022. The dataset includes <b>13,064 rows</b> and <b>31 features</b> related to various factors influencing road traffic accident severity. The target variable is categorized into three severity levels: <b>slight</b>, <b>serious</b>, and <b>fatal injuries</b>.The dataset aims to facilitate the analysis and prediction of road traffic accident severity using machine learning algorithms. It was initially collected by the <b>Addis Ababa Police Department</b> and contains a rich set of variables, including <b>weather conditions, collision type, driver demographics, road conditions, and time of accident</b>, among others. This comprehensive dataset serves as a foundation for developing predictive models for accident severity, which can be valuable for urban planning, traffic safety research, and policy development.Key features in the dataset include:<b>Accident Severity</b> (Target Variable): Categorical variable indicating the severity of the accident (slight, serious, fatal).<b>Weather Conditions</b>: Describes the weather at the time of the accident (e.g., clear, rainy, foggy).<b>Collision Type</b>: The type of collision (e.g., rear-end, side-impact).<b>Driver Demographics</b>: Features like <b>driver age</b>, <b>driver sex</b>, and <b>experience</b> that may affect accident outcomes.<b>Location</b>: Various aspects of the accident location, including <b>junction type</b>, <b>road type</b>, and <b>alignment</b>.<b>Temporal Features</b>: Time-related variables such as <b>day of the week</b>, <b>time of day</b>, and <b>seasonal trends</b>.<b>Vehicle Information</b>: Includes <b>vehicle type</b>, <b>vehicle defect</b>, <b>vehicle movement</b>, and the relationship between the vehicle owner and the driver.<b>Casualty Information</b>: Includes <b>age</b>, <b>sex</b>, and <b>fitness of the casualty</b>.
DOI: 10.6084/m9.figshare.10265063.v1
title: pSHDY*in_PpetE_BCD2_AgBIS_Flag.dna

description: Autonomous shuttle plasmid used for Cu<sup>2+</sup>-induced overexpression of bisabolene synthase from <i>Abies grandis</i> <i>Ag</i>BIS in the cyanobacterium <i>Synechocystis </i>sp. PCC 6803.Basic plasmid backbone derived from pSHDY (w/o <i>mobA</i>Y25F point mutation):doi: https://doi.org/10.1101/757948
DOI: 10.6084/m9.figshare.1575835.v1
title: Identifying Silence Climate in Organizations in the Framework of Contemporary Management Approaches

description: Dynamic competition conditions in present day bring about the consequence for businesses to face varied problems with each passing day. At this point, current management approaches include studies that would shed light on the new problems of businesses. Organizational Silence, a concept that has recently been being voiced in business world, has come up in such context. Organizational silence could be expressed as the employee behavior of keeping silent about certain negativities due to various reasons in an organization. Since knowledge sharing in modern organizations is of capital importance in terms of responding hastily to the changes in a competitive environment, spread of this behavior of employees to organization culture and climate presents a threat of indifference. In this study, the concept of Organizational Silence is defined and the effects of conceived silence climate on management of organizations are discussed.
DOI: 10.6084/m9.figshare.25999918.v2
title: Point pattern analysis

description: These are the programs used for numerical experiments.<br>
DOI: 10.6084/m9.figshare.7088747.v1
title: Excel: Reformat column layout to plate layout and vice versa (96 and 384 version)

description: These are a collection of XLSX sheets containing some of my favorite Excel tricks to reformat data to make analysis easier. <br>I often use these to reformat column formatted data into plate layout or vice versa to better visualize and understand my data. <br><br>
DOI: 10.6084/m9.figshare.26304148.v1
title: <b>The 11-item modified frailty index (mFI-11) as a tool to predict mortality in older patients on chronic hemodialysis</b>

description: <b>Abstract</b><i>Objective:</i> To analyze the 11-item modified frailty index (mFI-11) as a predictor of mortality among older adults on chronic hemodialysis. <i>Method:</i> A prospective observational study conducted in dialysis units in the municipality of Niterói (RJ, Brazil). A total of 124 patients on hemodialysis (HD) for at least 3 months, who began renal replacement therapy at the age of 65 or older, were followed for 24 months. Frailty was measured using the mFI-11, which comprises 9 comorbidities, 1 functional item, and 1 cognitive item. The comorbidities were obtained through anamnesis and medical record review. Functional dependency was determined by the presence of 2 or more dependencies on the Katz scale, and cognitive deficit was measured by the Mini-Mental State Examination (MMSE). The cutoff point for frailty was defined as mFI-11 ≥3. <i>Results:</i> The mean age at the start of the study was 76 years, and 55.6% were men. Of the 124 participants, 56.5% had diabetes, 21% had functional dependency, and 52.9% had cognitive deficits. The prevalence of frailty was 67.7%, and an mFI-11 score of ≥3 was significantly associated with an increased risk of death (HR 2.39, 95% CI 1.21-4.72). <i>Conclusion:</i> The mFI-11 demonstrated good performance in predicting mortality in older adults on HD. Its simplicity and feasibility make it a valuable tool for clinical practice, aiding in advanced care planning.
DOI: 10.15468/dl.5nu9yc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia innesi (Fowler, 1934)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((9.2698 2.0276,9.1702 1.8496,17.9648 1.8496,17.9648 10.8496,8.9648 10.8496,8.9648 2.8113,8.9984 2.8234,9.2654 3.2175,9.4253 3.0783,9.2698 2.0276))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013507-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.20973480.v1
title: An anchored matching-adjusted indirect comparison of fixed-dose combination calcipotriol and betamethasone dipropionate (Cal/BDP) cream versus Cal/BDP foam for the treatment of psoriasis

description: To undertake a comparison of Cal/BDP cream versus foam for the treatment of plaque psoriasis, with cross-trial population differences accounted for. An anchored matching-adjusted indirect comparison was undertaken, using individual patient data for Cal/BDP cream and published aggregated data for Cal/BDP foam. Altogether, 11 outcomes were analyzed, including PGA success, mPASI75, DLQI-related outcomes and treatment satisfaction across numerous domains. For each outcome an odds ratio or mean difference was calculated to represent the relative efficacy of Cal/BDP cream versus foam. Methods were guided by NICE Decision Support Unit recommendations. After adjustment, baseline characteristics were balanced across treatment arms in each analysis. There were no statistically significant differences in PGA success, mPASI75 or DLQI outcomes between Cal/BDP cream and foam when they were compared after their recommended treatment durations (8 weeks for cream and 4 weeks for foam). For treatment satisfaction after 1 week of treatment, Cal/BDP cream was significantly superior to the Cal/BDP foam in all but one domain of the questionnaire. Cal/BDP cream and Cal/BDP foam have equivalent efficacy and HRQoL (measured in DLQI) outcomes when used for the topical treatment of plaque psoriasis at their recommended treatment durations. A comparison of treatment satisfaction assessments after 1 week of treatment demonstrated that patients find Cal/BDP cream to be more convenient than foam.
DOI: 10.6084/m9.figshare.24125589.v3
title: Epifadin leads to rapid cell lysis of <i>S. aureus</i>

description: <b>Epifadin leads to rapid cell lysis of </b><b><i>S. aureus</i></b><b>.</b> <i>S. aureus</i> USA300 JE2 cells were applied to an agarose pad, onto which 2 µL of extracts (50 mg/mL) of the epifadin producer IVK83 (E9.czi) or ∆<i>efiTP</i> (D1_4h_time.czi) had been previously spotted. Image acquisition was started in the surrounding of the respective extract spot 15 min after <i>S. aureus</i> application. The agarose contained FM4-64 (red, 0.25 µg/mL, membrane dye) and Sytox Green (green, 0.25 µM, only visible upon membrane barrier malfunction).<br><b>Original microscopy data: </b><b>E9.czi</b> --&gt; 32.5x32.5µm crop: E9.tif --&gt; Montage of time points 0, 5, 15, 30 and 45 min: E9_1-2-4-7-10_montage.tif (_frame1-frame2..._) --&gt; timelapse video: E9_montage.tif<b>Original microscopy data: </b><b> D1_4h_time.czi </b> --&gt; 32.5x32.5µm crop: D1_1-49.tif --&gt; Montage of time points 0, 5, 15, 30, 45 and 240 min: D9_1-2-4-7-10-49_montage.tif --&gt; timelapse video: D1_montage.tif
DOI: 10.6084/m9.figshare.7241174.v1
title: Raw Analysis Data

description: Raw data files generated by gPLINK and GMDR were packaged.
DOI: 10.6084/m9.figshare.719784.v1
title: Qualifying Exam

description: This dataset is the product of my qualifying exams. The questions cover a range of topics including epigenetics and the host pathogen relationship, reproductive biology of oysters, estrogen signalling and understanding effects of various enviromental stresses on shellfish. This document was prepared over (a nervewracking) 5 days, includes personal opinions, and is unedited - so pardon the typos.
DOI: 10.6084/m9.figshare.5127547.v1
title: Supplementary Material for: Establishment of Population-Based Stroke Registry in Ludhiana City, Northwest India: Feasibility and Methodology

description: <b><i>Background/Aims:</i></b> The Indian Council of Medical Research (ICMR) initiated the Task Force Project to evaluate the feasibility of conducting a population-based stroke registry in Ludhiana city, Punjab, Northwest India. <b><i>Methods:</i></b> All first-ever, stroke patients over 18 years from the city of Ludhiana were included in the study from March 26th 2010 to March 25th 2011. Stroke information was collected based on the WHO STEPS approach from the participating hospitals, scan centres and doctors. Modified Rankin Scale (mRS) was administered by telephonic interview at 28 days after stroke. The information on stroke deaths was obtained from the Municipal Corporation (MC) office. <b><i>Results:</i></b> A total of 905 first-ever stroke patients were documented. After excluding duplicate cases and patients from outside the city, 493 patients were included. The practical issues identified in data collection from these centres were reluctance to take informed consent, lack of willingness to share the data, difficulty to identify key persons from each centre, retrieving medical records from public hospitals and poor documentation of deaths in MC office. <b><i>Conclusion:</i></b> Population-based stroke registry was feasible in an urban population with the above methodology. The issues related to feasibility were identified and necessary changes were made for the main phase of the registry.
DOI: 10.6084/m9.figshare.11854542.v1
title: Supplementary Material for: Abdominal Wall Dyskinesia: Case Report

description: The clinical presentation of repetitive choreiform involuntary movements of the anterior abdominal wall was first introduced as “belly dancer’s dyskinesia.” Etiologies of this rare condition include idiopathic causes, medication inducement, or post-abdominal surgery. We report a case of orobuccal stereotypic movements and abdominal wall dyskinesia secondary to prochlorperazine intake. The movements began 2 weeks after cessation of prochlorperazine. The patient took this dopamine receptor-blocking medication for 6 months to treat nausea due to chemotherapy. To our knowledge, abdominal wall dyskinesia as a tardive syndrome of prochlorperazine has not been previously reported.
DOI: 10.6084/m9.figshare.28366283.v1
title: Original data

description: Under reduced light heterogeneity conditions, <i>P. quinquefolius</i> grown under 13.1% light transmittance exhibited the greatest root dry weight compared to 0.7%, 6.4%, and 19.8% light transmittance conditions. At 13.1% light transmittance, <i>P. quinquefolius</i> integrated morphological and physiological traits, ultimately regulating root dry weight by reducing H<sub>2</sub>O<sub>2</sub> content and increasing <i>Pn</i> and chlorophyll content. Light intensity significantly altered the properties of <i>P. quinquefolius</i> rhizosphere soil and microbial diversity and community structure. A 13.1% light transmittance had a positive effect on both. Notably, it enhanced S-UE activity, pH, and AN content, as well as the relative abundance of pH-related microorganisms (such as <i>uncultured_Acidobacteria_bacterium</i>, <i>unclassified_Acidobacteriales</i>, and <i>unclassified_Leotiomycetes</i>) and denitrifying bacteria genera (such as <i>unclassified_Gemmatimonadaceae</i>, <i>Anaeromyxobacter</i>, and <i>Bradyrhizobium</i>). Soil chemical properties influenced <i>P. quinquefolius</i> growth by regulating photosynthesis and antioxidant physiological traits. Overall, under reduced light heterogeneity conditions, light intensity can directly or indirectly affect the soil-rhizosphere-<i>P. quinquefolius</i> system, but the underlying mechanisms require further investigation. This study expands our understanding of how light intensity under under forests light heterogeneity conditions regulates <i>P. quinquefolius</i> growth and is of significant importance for developing effective management strategies for under forests <i>P. quinquefolius</i> cultivation.
DOI: 10.6084/m9.figshare.3756600.v2
title: Spreadsheet of sources: Gamification of Software Testing - an MLR

description: The sources used in the paper and the analysis results (raw data). <br><br>Mäntylä, M. V., Smolander, K. Gamification of Software Testing - an MLR, In Proceedings of The 17th International Conference on Product-Focused Software Process Improvement PROFES, 22th – 24th November 2016, Trondheim, Norway <br>
DOI: 10.6084/m9.figshare.5125171.v1
title: Supplementary Material for: Environmental and Genomic Factors as well as Interventions Influencing Smoking Cessation: A Systematic Review of Reviews and a Proposed Working Model

description: <b><i>Background:</i></b> Smoking behaviour is a major public health problem worldwide. Several sources have confirmed the implication of genomic factors in smoking behaviour. These factors interact both with environmental factors and interventions to develop a certain behaviour. <b><i>Objectives:</i></b> Describing the environmental and genomic factors as well as the interventions influencing smoking cessation (SC) and developing a working model incorporating the different factors influencing SC were our main objectives. <b><i>Methods:</i></b> Two systematic reviews were conducted using articles in English from the Cochrane library, PubMed and HuGENet from January 2000 to September 2012: (1) a systematic review of systematic reviews and meta-analyses and (2) a systematic review of original research for genomic factors. The proposed working model was developed by making use of previous models of SC and applying an iterative process of discussion and re-examination by the authors. <b><i>Results:</i></b> We confirmed the importance of the 4 main factors influencing SC: (1) environmental factors, (2) genomic factors, (3) gene-environment interactions, and (4) evidence-based interventions. The model demonstrates the complex network of factors influencing SC. <b><i>Conclusion:</i></b> The working model of SC proposed a global view of factors influencing SC, warranting future research in this area. Future testing of the model will consolidate the understanding of the different factors affecting SC and will help to improve interventions in this field.
DOI: 10.6084/m9.figshare.7150781.v1
title: Primatology Genealogy Network

description: The data describe a two aspects of an "academic genealogy". The supervisor of a doctoral thesis candidate is often thought of as the intellectual parent of the candidate. Modelling the relationship between students and their supervisors is often done. This is the first aspect of this dataset. The second aspect that we have included in this dataset is a weaker link - that of the role played by the examiner of the student. From the files included here it is possible to create a hierarchical, directed (time-based) network describing the genealogy of primatologists. Data includes the institutional affiliations of all parties at the time of the key activity (either supervision or examination).<br>
DOI: 10.6084/m9.figshare.14538537.v2
title: Zhuang & Calkin et al., Loss of the Long Non-coding RNA OIP5-AS1 Exacerbates Heart Failure in a Sex-Specific Manner; RNA-seq Data

description: RNA-seq data from left ventricle of C57BL/6J WT and OIP5-AS1 KO male and female mice that have undergone transverse aortic constriction (TAC) to induce heart failure.<br>
DOI: 10.6084/m9.figshare.14397131.v1
title: Complete de novo assembly of Wolbachia endosymbiont of Diaphorina citri Kuwayama (Hemiptera: Liviidae) using long-read genome sequencing

description: Supplementary files for complete de novo assembly of Wolbachia endosymbiont of Diaphorina citri Kuwayama (Hemiptera: Liviidae) using long-read genome sequencing
DOI: 10.6084/m9.figshare.24040563.v8
title: <b>BigDataAD Benchmark Dataset</b>

description: The largest real-world dataset for multivariate time series anomaly detection (MTSAD) from the AIOps system of a Real-Time Data Warehouse (RTDW) from a top cloud computing company. All the metrics and labels in our dataset are derived from real-world scenarios. All metrics were obtained from the RTDW instance monitoring system and cover a rich variety of metric types, including <b>CPU usage, queries per second (QPS) and latency</b>, which are related to many important modules within RTDW AIOps Dataset. We obtain labels from the ticket system, which integrates three main sources of instance anomalies: user service requests, instance unavailability and fault simulations . User service requests refer to tickets that are submitted directly by users, whereas instance unavailability is typically detected through existing monitoring tools or discovered by Site Reliability Engineers (SREs). Since the system is usually very stable, we augment the anomaly samples by conducting fault simulations. Fault simulation refers to a special type of anomaly, planned beforehand, which is introduced to the system to test its performance under extreme conditions. All records in the ticket system are subject to follow-up processing by engineers, who meticulously mark the start and end times of each ticket. This rigorous approach ensures the accuracy of the labels in our dataset.
DOI: 10.6084/m9.figshare.c.3866554_d4.v1
title: Additional file 4 of Surface EMG signals in very late-stage of Duchenne muscular dystrophy: a case study

description: Raw sEMG signals during the triceps SVICs. MAT file containing two vectors of data (59706x1) of the raw sEMG signals of the biceps (EMGb) and the triceps (EMGt). Data was measured at 1 kHz. (MAT 853 kb)