cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.udvun7
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Rhododendron mainlingense S.H.Huang & R.C.Fang"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025245-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qvr7rx
title: Occurrence Download

description: A dataset containing 71761653 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Observation.org, Nature data from around the World"
 ]
}

 The dataset includes 71761653 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234697-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rvdqcm
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mocis frugalis (Fabricius, 1775)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0211666-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25412307
title: Proteomic characterization of <i>Pseudogymnoascus</i> spp. isolates from polar and temperate regions

description: Proteomics has been used extensively in the field of mycology, mainly in trying to understand the complex network of protein-protein interactions that has been implicated in the molecular functions of fungi. It is also a useful tool to compare metabolic differences within a genus. Species of <i>Pseudogymnoascus</i>, a genus under the phyla Ascomycota, have been shown to play an important role in the soil environment. They have been found in both polar and temperate regions and are a known producer of many extracellular hydrolases that contribute to soil decomposition. Despite the apparent importance of <i>Pseudogymnoascus</i> spp. in the soil ecosystem, investigations into their molecular functions are still very limited. In the present study, proteomic characterization of six <i>Pseudogymnoascus</i> spp. isolated from three biogeographic regions (the Arctic, Antarctic, and temperate regions) was carried out using tandem mass spectrometry. Prior to proteomic analysis, the optimization for protein extraction was carried out. Trichloroacetic acid‑acetone‑phenol was found to be the best extraction method to be used for proteomic profiling of <i>Pseudogymnoascus</i> spp. The proteomic analysis identified 2003 proteins that were successfully mapped to the UniProtKB database. The identified proteins were clustered according to their biological processes and molecular functions. The shared proteins found in all <i>Pseudogymnoascus</i> spp. (1201 proteins) showed a significantly close relationship in their basic cellular functions, despite differences in morphological structures. Analysis of <i>Pseudogymnoascus</i> spp. proteome also identified proteins that were unique to each region. However, a high number of these proteins belonged to protein families of similar molecular functions, namely, transferases and hydrolases. Our proteomic data can be used as a reference for <i>Pseudogymnoascus</i> spp. across different global regions and a foundation for future soil ecosystem function research.
DOI: 10.6084/m9.figshare.25412307.v1
title: Proteomic characterization of <i>Pseudogymnoascus</i> spp. isolates from polar and temperate regions

description: Proteomics has been used extensively in the field of mycology, mainly in trying to understand the complex network of protein-protein interactions that has been implicated in the molecular functions of fungi. It is also a useful tool to compare metabolic differences within a genus. Species of <i>Pseudogymnoascus</i>, a genus under the phyla Ascomycota, have been shown to play an important role in the soil environment. They have been found in both polar and temperate regions and are a known producer of many extracellular hydrolases that contribute to soil decomposition. Despite the apparent importance of <i>Pseudogymnoascus</i> spp. in the soil ecosystem, investigations into their molecular functions are still very limited. In the present study, proteomic characterization of six <i>Pseudogymnoascus</i> spp. isolated from three biogeographic regions (the Arctic, Antarctic, and temperate regions) was carried out using tandem mass spectrometry. Prior to proteomic analysis, the optimization for protein extraction was carried out. Trichloroacetic acid‑acetone‑phenol was found to be the best extraction method to be used for proteomic profiling of <i>Pseudogymnoascus</i> spp. The proteomic analysis identified 2003 proteins that were successfully mapped to the UniProtKB database. The identified proteins were clustered according to their biological processes and molecular functions. The shared proteins found in all <i>Pseudogymnoascus</i> spp. (1201 proteins) showed a significantly close relationship in their basic cellular functions, despite differences in morphological structures. Analysis of <i>Pseudogymnoascus</i> spp. proteome also identified proteins that were unique to each region. However, a high number of these proteins belonged to protein families of similar molecular functions, namely, transferases and hydrolases. Our proteomic data can be used as a reference for <i>Pseudogymnoascus</i> spp. across different global regions and a foundation for future soil ecosystem function research.
DOI: 10.6084/m9.figshare.25507628
title: A revised phylogeny of Boletaceae using whole genome sequences

description: The porcini mushroom family Boletaceae is a diverse, widespread group of ectomycorrhizal (ECM) mushroom-forming fungi that so far has eluded intrafamilial phylogenetic resolution based on morphology and multilocus data sets. In this study, we present a genome-wide molecular data set of 1764 single-copy gene families from a global sampling of 418 Boletaceae specimens. The resulting phylogenetic analysis has strong statistical support for most branches of the tree, including the first statistically robust backbone. The enigmatic <i>Phylloboletellus chloephorus</i> from non-ECM Argentinian subtropical forests was recovered as a new subfamily sister to the core Boletaceae. Time-calibrated branch lengths estimate that the family first arose in the early to mid-Cretaceous and underwent a rapid radiation in the Eocene, possibly when the ECM nutritional mode arose with the emergence and diversification of ECM angiosperms. Biogeographic reconstructions reveal a complex history of vicariance and episodic long-distance dispersal correlated with historical geologic events, including Gondwanan origins and inferred vicariance associated with its disarticulation. Together, this study represents the most comprehensively sampled, data-rich molecular phylogeny of the Boletaceae to date, establishing a foundation for future robust inferences of biogeography in the group.
DOI: 10.6084/m9.figshare.25507628.v1
title: A revised phylogeny of Boletaceae using whole genome sequences

description: The porcini mushroom family Boletaceae is a diverse, widespread group of ectomycorrhizal (ECM) mushroom-forming fungi that so far has eluded intrafamilial phylogenetic resolution based on morphology and multilocus data sets. In this study, we present a genome-wide molecular data set of 1764 single-copy gene families from a global sampling of 418 Boletaceae specimens. The resulting phylogenetic analysis has strong statistical support for most branches of the tree, including the first statistically robust backbone. The enigmatic <i>Phylloboletellus chloephorus</i> from non-ECM Argentinian subtropical forests was recovered as a new subfamily sister to the core Boletaceae. Time-calibrated branch lengths estimate that the family first arose in the early to mid-Cretaceous and underwent a rapid radiation in the Eocene, possibly when the ECM nutritional mode arose with the emergence and diversification of ECM angiosperms. Biogeographic reconstructions reveal a complex history of vicariance and episodic long-distance dispersal correlated with historical geologic events, including Gondwanan origins and inferred vicariance associated with its disarticulation. Together, this study represents the most comprehensively sampled, data-rich molecular phylogeny of the Boletaceae to date, establishing a foundation for future robust inferences of biogeography in the group.
DOI: 10.6084/m9.figshare.25345163
title: <i>Arcyria similaris</i>: A new myxomycete species from China

description: A new myxomycete species, <i>Arcyria similaris</i>, was reported herein. The specimens were found and collected in the field on dead bark from Jingangtai National Geopark in Henan Province of China. This species has distinct and unique morphological characteristics, including dark grayish olive sporothecae that fade to smoke gray with age, shallow saucer-shaped cups with marked reticulations and thick papillae on the inner surface, a netted capillitium with many bulges, uniformly marked with low, dense, and irregular reticulations, and spores (8.0–)9.3–10.1(–10.9) μm in diameter, marked with sparse small warts and grouped prominent warts. Apart from a comprehensive morphological study, partial sequences of the nuclear 18S rDNA and elongation factor-1 alpha (<i>EF-1α</i>) genes were also provided in this study. This new species was described and illustrated morphologically. The specimens are deposited in the Herbarium of Fungi of Nanjing Normal University (HFNNU).
DOI: 10.6084/m9.figshare.25345163.v1
title: <i>Arcyria similaris</i>: A new myxomycete species from China

description: A new myxomycete species, <i>Arcyria similaris</i>, was reported herein. The specimens were found and collected in the field on dead bark from Jingangtai National Geopark in Henan Province of China. This species has distinct and unique morphological characteristics, including dark grayish olive sporothecae that fade to smoke gray with age, shallow saucer-shaped cups with marked reticulations and thick papillae on the inner surface, a netted capillitium with many bulges, uniformly marked with low, dense, and irregular reticulations, and spores (8.0–)9.3–10.1(–10.9) μm in diameter, marked with sparse small warts and grouped prominent warts. Apart from a comprehensive morphological study, partial sequences of the nuclear 18S rDNA and elongation factor-1 alpha (<i>EF-1α</i>) genes were also provided in this study. This new species was described and illustrated morphologically. The specimens are deposited in the Herbarium of Fungi of Nanjing Normal University (HFNNU).
DOI: 10.15468/dl.f2afsd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudopanolis azusa Sugi, 1970",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0211674-220831081235567/datasets/export for details.
DOI: 10.6084/m9.figshare.25308475
title: Three new species of <i>Agaricus</i> from Baiyun Mountain, Guangzhou, China

description: <i>Agaricus</i> is a species-rich genus with more than 600 species around the world. In this work, three new species, <i>Agaricus cacainus, A. baiyunensis</i>, and <i>A. praeclarefibrillosus</i> are described from the specimens collected at Baiyun Mountain, Guangzhou, China, a subtropical area with a monsoon maritime climate, based on phylogenetic analyses and morphological examinations of internal transcribed spacer (ITS1-5.8S-ITS2 = ITS), D1/D2 domains of the large subunit of ribosomal DNA (28S), and a part of translation elongation factor 1-alpha (<i>TEF1</i>). <i>Agaricus cacainus</i> in <i>A</i>. sect. <i>Amoeni</i> is characterized by a parabolic to applanate, slightly depressed pileus covered with chocolate brown, appressed, triangular squamules against white background, a white, furfuraceous stipe, an unchanging context when cut, a fragile and evanescent annulus, usually 4- or 2-spored basidia, and mostly pyriform cheilocystidia. <i>Agaricus baiyunensis</i> in <i>A</i>. sect. <i>Minores</i> has a pileus with a slightly truncate top covered with light brown, downy-wooly fibrillose scales and a light yellowish stipe with membranous annulus. <i>Agaricus praeclarefibrillosus</i> in <i>A</i>. sect. <i>Brunneopicti</i> is characterized by a pileus surface with brownish, triangular, recurved scales and longitudinally splitting lines toward margin, a cottony stipe with white, tiny, recurved fibrils, a single annulus, and variously shaped cheilocystidia, with sparsely ornamented basidiospores. The detailed comparison of their morphological characteristics with closely related species is provided.
DOI: 10.6084/m9.figshare.25481689
title: <i>Austropuccinia licaniae</i>, first congeneric with the myrtle rust pathogen <i>A. psidii</i>

description: In 1895 and 2001, rust fungi affecting <i>Licania</i> trees (Chrysobalanchaceae) in Brazil were described as <i>Uredo licaniae</i> by Hennings in the state of Goiás and as <i>Phakopsora tomentosae</i> by Ferreira et al. in the state of Amazonas, respectively. Recently, a <i>Licania</i> rust fungus collected close to the Amazonian type location sharing symptoms with the former two species was subjected to morphological examinations and molecular phylogenetic analyses using 28S nuc rDNA (ITS2-28S) and cytochrome <i>c</i> oxidase subunit III (CO3) gene sequences. Since the original type specimen of <i>Ph. tomentosae</i> is considered lost, we carefully reviewed the type description and questioned the identity of the telium, which justified the description of the fungus as a <i>Phakopsora</i> species. Furthermore, the additional revision of the type material described by Hennings revealed that <i>Ph. tomentosae</i> is a synonym of <i>U. licaniae</i>. Based on the morphological examinations, disease symptoms, and shared hosts, we concluded that the newly collected material is conspecific with <i>U. licaniae</i>. However, the phylogenetic analyses rejected allocation in <i>Phakopsora</i> and instead assigned the <i>Licania</i> rust fungus in a sister relationship with <i>Austropuccinia psidii</i> (Sphaerophragmiaceae), the causal agent of the globally invasive myrtle rust pathogen. We therefore favored a recombination of <i>U. licaniae</i> (syn. <i>Ph. tomentosae</i>) into <i>Austropuccinia</i> and proposed the new name <i>Austropuccina licaniae</i> for the second species now identified for this genus. The fungus shares conspicuous symptoms with <i>A. psidii</i>, causing often severe infections of growing leaves and shoots that lead to leaf necrosis, leaf shedding, and eventually to the dieback of entire shoots. In view of the very similar symptoms of its aggressively invasive sister species, we briefly discuss the current state of knowledge about <i>A. licaniae</i> and the potential risks, and the opportunity of its identification.
DOI: 10.6084/m9.figshare.25481689.v1
title: <i>Austropuccinia licaniae</i>, first congeneric with the myrtle rust pathogen <i>A. psidii</i>

description: In 1895 and 2001, rust fungi affecting <i>Licania</i> trees (Chrysobalanchaceae) in Brazil were described as <i>Uredo licaniae</i> by Hennings in the state of Goiás and as <i>Phakopsora tomentosae</i> by Ferreira et al. in the state of Amazonas, respectively. Recently, a <i>Licania</i> rust fungus collected close to the Amazonian type location sharing symptoms with the former two species was subjected to morphological examinations and molecular phylogenetic analyses using 28S nuc rDNA (ITS2-28S) and cytochrome <i>c</i> oxidase subunit III (CO3) gene sequences. Since the original type specimen of <i>Ph. tomentosae</i> is considered lost, we carefully reviewed the type description and questioned the identity of the telium, which justified the description of the fungus as a <i>Phakopsora</i> species. Furthermore, the additional revision of the type material described by Hennings revealed that <i>Ph. tomentosae</i> is a synonym of <i>U. licaniae</i>. Based on the morphological examinations, disease symptoms, and shared hosts, we concluded that the newly collected material is conspecific with <i>U. licaniae</i>. However, the phylogenetic analyses rejected allocation in <i>Phakopsora</i> and instead assigned the <i>Licania</i> rust fungus in a sister relationship with <i>Austropuccinia psidii</i> (Sphaerophragmiaceae), the causal agent of the globally invasive myrtle rust pathogen. We therefore favored a recombination of <i>U. licaniae</i> (syn. <i>Ph. tomentosae</i>) into <i>Austropuccinia</i> and proposed the new name <i>Austropuccina licaniae</i> for the second species now identified for this genus. The fungus shares conspicuous symptoms with <i>A. psidii</i>, causing often severe infections of growing leaves and shoots that lead to leaf necrosis, leaf shedding, and eventually to the dieback of entire shoots. In view of the very similar symptoms of its aggressively invasive sister species, we briefly discuss the current state of knowledge about <i>A. licaniae</i> and the potential risks, and the opportunity of its identification.
DOI: 10.6084/m9.figshare.25308475.v1
title: Three new species of <i>Agaricus</i> from Baiyun Mountain, Guangzhou, China

description: <i>Agaricus</i> is a species-rich genus with more than 600 species around the world. In this work, three new species, <i>Agaricus cacainus, A. baiyunensis</i>, and <i>A. praeclarefibrillosus</i> are described from the specimens collected at Baiyun Mountain, Guangzhou, China, a subtropical area with a monsoon maritime climate, based on phylogenetic analyses and morphological examinations of internal transcribed spacer (ITS1-5.8S-ITS2 = ITS), D1/D2 domains of the large subunit of ribosomal DNA (28S), and a part of translation elongation factor 1-alpha (<i>TEF1</i>). <i>Agaricus cacainus</i> in <i>A</i>. sect. <i>Amoeni</i> is characterized by a parabolic to applanate, slightly depressed pileus covered with chocolate brown, appressed, triangular squamules against white background, a white, furfuraceous stipe, an unchanging context when cut, a fragile and evanescent annulus, usually 4- or 2-spored basidia, and mostly pyriform cheilocystidia. <i>Agaricus baiyunensis</i> in <i>A</i>. sect. <i>Minores</i> has a pileus with a slightly truncate top covered with light brown, downy-wooly fibrillose scales and a light yellowish stipe with membranous annulus. <i>Agaricus praeclarefibrillosus</i> in <i>A</i>. sect. <i>Brunneopicti</i> is characterized by a pileus surface with brownish, triangular, recurved scales and longitudinally splitting lines toward margin, a cottony stipe with white, tiny, recurved fibrils, a single annulus, and variously shaped cheilocystidia, with sparsely ornamented basidiospores. The detailed comparison of their morphological characteristics with closely related species is provided.
DOI: 10.15468/dl.5a52z7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Diaspis echinocacti (Bouché, 1833)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0211697-220831081235567/datasets/export for details.
DOI: 10.15468/dl.v34ena
title: Occurrence Download

description: A dataset containing 429 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hordeum euclaston Steud."
 ]
}

 The dataset includes 429 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248789-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zg2za6
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Endotricha flavofascialis Bremer, 1864",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0211711-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.shedwy
title: Occurrence Download

description: A dataset containing 1755 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Long Term Time-Series Data on Fish Monitoring by Okavango Research Institute, Botswana"
 ]
}

 The dataset includes 1755 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248792-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u2dj7t
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudocatharylla simplex Zeller, 1877",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 33 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0211707-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.85mncg
title: Occurrence Download

description: A dataset containing 1299 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coenogonium linkii Ehrenb.)",
 "Country is Colombia",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1299 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248795-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nhbj47
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anthurium libanoense Croat"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037861-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fqp6uw
title: Occurrence Download

description: A dataset containing 550 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hordeum chilense Roem. & Schult."
 ]
}

 The dataset includes 550 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248780-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xduhs7
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea robusta Gaertn."
 ]
}

 The dataset's 2 records were derived from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0229388-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.