cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.p2dc3p
title: Occurrence Download

description: A dataset containing 285 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Psoralidium tenuiflorum (Pursh) Rydb.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 285 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013426-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/myyh5gvmv5
title: Data for: INTEGRATED QUANTIFICATION OF FOREST TOTAL ECONOMIC VALUE

description: This is a spreadsheet that allows for quick estimation of the total economic value of forests.
DOI: 10.6084/m9.figshare.24712317.v1
title: Experimental Data

description: Collection of experimental recordings with inventory list attached at the end
DOI: 10.6084/m9.figshare.24915945.v1
title: ADCP Dataset - Real car collection and Simulation

description: Real car collection is collected by real vehicle, data can be trained or test directly.
Raw data is the data without preprocessing, can be trained or test after preprocessing.
Simulation Urban Roads dataset is simulation data, It can also be used for training, and more simulations can be added by oneself.
DOI: 10.6084/m9.figshare.24631191.v3
title: Muscle length project

description: The aim of this project was to investigate whether whether alterations in muscle length could alter the common synaptic oscillations to spinal motor neurons, particularly in the tremor band (5-15 Hz). To achieve this, we decomposed motor unit spike trains from high-density surface electromyograms recorded from a leg muscle (tibialis anterior; TA) at two different muscle lengths using this algorithm. To interpret the results derived from the motor unit spike trains, we conducted a second set of experiments, combined with computational simulations, to investigate how changes in muscle length affected the low-pass characteristics of the TA twitches.For further details, please refers to the <b>READ ME</b> file.
DOI: 10.6084/m9.figshare.6843608.v1
title: Species Data for Biome Affiliation, Range Size, and Threat Status

description: Dataset for species' geographic range size, assigned biome affiliation, and IUCN Red List Threat Status.
DOI: 10.17632/yxf2yv5ymt
title: An annotated image dataset of downy mildew symptoms on Merlot grape variety

description: This is a dataset of high-resolution colour images of grapevines. It contains 99 images acquired in the vineyard from a cruising tractor. Each image include the full foliage of a grapevine plant. These images display a diverse range of symptoms caused by the grapevine downy mildew (Plasmopara viticola), a major fungal disease. The dataset also includes various confounding factors, i.e. anomalies which are not related to the disease. These anomalies are the natural and common phenomena affecting vineyards such as results of mechanical wounds, necroses, chemical burns or yellowing and discolorations due to nutritional or hydric deficiencies. Images were acquired in-situ on “Le Domaine de la Grande Ferrade” a public experimental facility of INRAE, in the area of Bordeaux. Acquisitions took place at early fruiting stages (BBCH 75-79) corresponding to the main sanitary pressure during growth. The acquisition device, embedded on a vine tractor, is composed of an industrial colour camera synchronised with powerful flashes. The purpose of this device is to produce a “day for night” effect that mitigates the variation of sunlight. It enables to homogenise images acquired during different weathers and time of the day and to ensure that the foreground (containing foliage) displays appropriate brightness, with minimum shadows while the background is darker. The images of the dataset were annotated manually by photo-interpretation with a careful review of expertise regarding phytopathology and physiological disorders. The annotation process consists in associating pixels with a class that defines its membership to a type of organ and its physiological state. Pixels from healthy, symptomatic or abnormal grapevine tissues were labelled into seven classes: “Limbus”, “Leaf edges”, “Berries”, “Stems”, “Foliar mildew”, “Berries mildew” and “Anomalies”. The annotation is achieved with the GIMP2 software as mask images where the value attributed to each pixel corresponds to one of the seven considered classes.
DOI: 10.6084/m9.figshare.13859330.v1
title: Supplementary Material for: A Computational Systems Biology Approach Identifies SLUG as a Mediator of Partial Epithelial-Mesenchymal Transition (EMT)

description: Epithelial-mesenchymal plasticity comprises reversible transitions among epithelial, hybrid epithelial/mesenchymal (E/M) and mesenchymal phenotypes, and underlies various aspects of aggressive tumor progression such as metastasis, therapy resistance, and immune evasion. The process of cells attaining one or more hybrid E/M phenotypes is termed as partial epithelial mesenchymal transition (EMT). Cells in hybrid E/M phenotype(s) can be more aggressive than those in either fully epithelial or mesenchymal state. Thus, identifying regulators of hybrid E/M phenotypes is essential to decipher the rheostats of phenotypic plasticity and consequent accelerators of metastasis. Here, using a computational systems biology approach, we demonstrate that SLUG (SNAIL2) – an EMT-inducing transcription factor – can inhibit cells from undergoing a complete EMT and thus stabilize them in hybrid E/M phenotype(s). It expands the parametric range enabling the existence of a hybrid E/M phenotype, thereby behaving as a phenotypic stability factor. Our simulations suggest that this specific property of SLUG emerges from the topology of the regulatory network it forms with other key regulators of epithelial-mesenchymal plasticity. Clinical data suggest that SLUG associates with worse patient prognosis across multiple carcinomas. Together, our results indicate that SLUG can stabilize hybrid E/M phenotype(s).
DOI: 10.6084/m9.figshare.22144694.v1
title: Assembly and annotation files of Protosalanx chinensis genome

description: <strong>Organism name:</strong>Protosalanx chinensis <strong>Submitter:</strong> Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences <strong>Date:</strong> 2023-02-23 <strong>Assembly level:</strong> Chromosome <strong>Assembly method:</strong> Hifiasm v0.16.1-r375 <strong>Genome coverage:</strong> 62x <strong>Sequencing technology:</strong> PacBio HiFi, DNBSEQ
DOI: 10.6084/m9.figshare.23899845.v1
title: population migration.zip

description: Baidu Migration Big Data provides indices of migration scale (including an in-migration scale index and an out-migration scale index) recorded in days for 365 cities in China and the percentage of in-migration from a particular city to the total in-migration from that city for each city's in-migration sources.
DOI: 10.25375/uct.22309093.v1
title: Characterisation of dust-sized coal particulates: Malvern particle size analysis

description: This data represents the raw results obtained from the particle size analysis conducted using the Malven Mastersizer instrument. In addition to the raw results the excel sheet contains plots of the cumulative and volume-based particle size distribution of 17 coal particulate samples.
DOI: 10.6084/m9.figshare.21068926.v1
title: Data File from Counterfactual thinking elicits emotional change in young children

description: Adults often reason about what might have happened had they chosen an alternative course of action in the past, which can elicit the counterfactual emotion of regret. It is unclear whether young children's emotions are similarly impacted by counterfactual thinking about past possibilities. In this study, 4- to 9-year-old children (<i>N</i> = 160) opened one of two boxes, which concealed small and large prizes, respectively. Some children had the means to open either box, whereas other children only had the means to open one box. After seeing that the prize they did not obtain was larger than the one they did obtain, children were significantly more likely to report a negative change in emotion when the non-obtained prize had been a straightforward counterfactual possibility than when it had not. This shows that even young children experience counterfactual emotions following choices, which may ultimately drive them to make better choices in the future.This article is part of the theme issue ‘Thinking about possibilities: mechanisms, ontogeny, functions and phylogeny’.
DOI: 10.6084/m9.figshare.23255273.v1
title: Processed Whole Genome Sequencing Data (Goyal et. al)

description: GeoMx Whole Genome Sequencing processed datasets from Goyal et al.. All raw data from the Whole Genome Sequencing used in this manuscript can be found at BioProject Accession <strong>PRJNA972638</strong>.
DOI: 10.6084/m9.figshare.3382768.v1
title: Altimetric_data_Volcanic_volcano.xls

description: Original dataset downloaded from Altmetrics in July 2015. Top 100 papers published with keywords 'volcano' and 'volcanic'. Added to by Jenni Barclay with Google Scholar citations (May 2016) and with her own classification of paper type.
DOI: 10.6084/m9.figshare.27245016.v3
title: Supporting data for Urbanization of seed dispersal networks

description: Seed dispersal networks in forest habitats and urban matrix.
DOI: 10.6084/m9.figshare.10063058.v2
title: Dataset on the effect of vancomycin on metabolic changes in type 1 diabetic mice

description: Here we treated streptozotocin-induced diabetic mice with vancomycin (Vanc) to disturb the gut microbiota and host metabolic phenotype. In order to study the effect of vancomycin on host metabolism, a <sup>1</sup>H NMR-based metabolomics approach was applied to analyze metabolic changes in caecum contents, feces, caecum tissues, colonic tissues, serum, and hippocampus of normal control (CON), type 1 diabetic (T1D), and vancomycin-treated type 1 diabetic (T1DV) mice at 3, 7 and 11 weeks.<br> This study is submitted to Microbiome. Hong Zheng, Pengtao Xu, Qiaoying Jiang, Qingqing Xu, Yafei Zheng, Junjie Yan, Hui Ji, Jie Ning<sup>1</sup>, Xi Zhang, Chen Li, Limin Zhang, Yuping Li, Xiaokui Li, Weihong Song, and Hongchang Gao. (2021). Depletion of acetate-producing bacteria from the gut microbiota facilitates cognitive impairment through the gut-brain neural mechanism in diabetic mice.
DOI: 10.6084/m9.figshare.28646969.v2
title: Deinterleaving of Intercepted Radar Pulse Streams via Temporal Convolutional Attention Network

description: In the domain of electronic warfare, radar signal deinterleaving emerges as the foundational and indispensable phase of electronic reconnaissance. The ever-increasing complexity of electromagnetic environments, further compounded by technological advancements such as multi-function radars (MFRs), has led to the inadequacy of traditional deinterleaving techniques. To tackle these challenges, this paper introduces the Temporal Convolutional Attention Network (TCAN) framework. This framework harmoniously combines a temporal convolutional network (TCN) with an advanced attention mechanism, thereby significantly enhancing the system's signal sorting proficiency. Through rigorous experimental validation, we demonstrate that TCAN consistently outperforms existing baseline methods. This superiority is particularly pronounced under conditions of signal sparsity and in non-ideal environments, which are typified by pulse loss, spurious pulses, and measurement errors. Furthermore, we conduct a thorough analysis to elucidate the profound impact of various input formats and multi-parameter features on deinterleaving performance. By meticulously examining these factors, we establish TCAN as a robust and versatile solution capable of effectively navigating the heightened complexity of modern radar signal environments. Our findings highlight TCAN's potential as a potent instrument for augmenting electronic reconnaissance capabilities amidst evolving electromagnetic challenges
DOI: 10.6084/m9.figshare.12456626.v1
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-22434 to JVASP-25327)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.14963739.v1
title: variants.GATK.iteration.1.Full.sorted.vcftools.biAllelicSNP.maf05.mm0.9.recode.vcf.gz

description: Nucleotide variants used in a publication (Title: The pink salmon genome: Uncovering the genomic consequences of a strict two-year life-cyclep { margin-bottom: 0.25cm; line-height: 115%; background: transparent }a:link { color: #000080; so-language: zxx; text-decoration: underline }). Please refer to this publication for the methods and sampling locations. These variants were identified from whole-genome resequencing data from 61 individuals using GATK. The genome the resequencing data was identified from is available in this repository (10.6084/m9.figshare.14963721). These variants were also mapped to various genomes using the following scripts: https://github.com/KrisChristensen/MapVCF2NewGenome<br>
DOI: 10.6084/m9.figshare.23551605.v1
title: Genome-wide association study of hippocampal BOLD-CBF correlation in Han Chinese population

description: GWAS summary of hippocampal BOLD-CBF correlation in Han Chinese population
DOI: 10.6084/m9.figshare.12350000.v1
title: Genomic selection for grain yield in the CIMMYT wheat breeding program – status and perspectives

description: Genotyping data for 23,526 CIMMYT wheat breeding lines in the yield trials. The homozygous alleles are indicated by 0 and 1 and the heterozygote is indicated by 0.5 in the dataset.<br>
DOI: 10.6084/m9.figshare.16577423.v2
title: Data for Electric and Magnetic Field of Power Transmission Lines in Malaysia

description: Simulated dataset of electric and magnetic field of five types of power transmission lines in Malaysia:
DOI: 10.6084/m9.figshare.20012087.v1
title: Inclusion of blood lactate O2 equivalent in the VO2-intensity regression at level and 10.5% grade running

description: Abstract This study aimed to analyze the influence of adding blood lactate ([La-]) energy equivalent (Eq) to the VO2 measurements during running exercise at different grades (0% and 10.5%) in order to estimate energy cost of running. Thirteen male highly-trained middle- and long-distance runners (age 28.1 ± 4.2 years; stature 1.75 ± 0.07 m; body mass 65.2 ± 4.9 kg; and maximal oxygen uptake 70.3 ± 4.9 ml∙kg-1 ∙min-1 ) volunteered after medical approval and performed two treadmill tests (0% and 10.5% grade) which included several bouts at a constant speed. Individual VO2-speed regressions were determined for each subject and alternative regressions were established by adding an energy equivalent of 3 ml O2 Eq∙kg-1 ∙mM [La-] to the mean VO2 values. No significant interaction between [La-] O2 equivalent inclusion and grade running was found. Results of within-subjects ANOVAs indicated a significant effect of [La-] inclusion in the regression slope and in the estimated energy cost of running at both level and grade running. However, the obtained effect sizes suggest that this effect is considerably higher at level compared with grade running. These findings indicate that the inclusion of [La-] measurements in VO2-intensity regression estimates at sub maximal running should be considered when testing highly trained runners on the treadmill.
DOI: 10.17632/k872m7mfrj
title: CHARACTERIZATION OF WASTE IN THE VICINITY OF ANAND DISTRICT, GUJARAT, INDIA

description: The output of garbage is expanding at an unusual rate as a result of the fast population increase, particularly in emerging nations. Despite the use of incineration and other waste treatment methods, landfills continue to be the most common method of garbage disposal in developing nations. In most cases, financing for proper waste management is minimal, and adoption of more complex waste treatment technology is low. Many landfills are dangerous if they are not properly managed. The purpose of the study was to collect and segregate and manage the garbage as its production is a direct outcome of urbanization, and ineffective waste management poses health risks and affects the urban environment. Therefore, present study aims to generate baseline data for the different types of waste in the vicinity of the Anand district. In this research work, we have categorized waste into two different categories such as biodegradable, non-biodegradable, Recyclable, and Non-recyclable from two dumping sites namely Lambhvel (S1) and Bakrol (S2) of Dist. Anand -The milk city of India which comprises 21,302.43 square meters and 2322.27 square meters area respectively. Each disposal site had a distinct amount of trash covered. The present result revealed the biodegradable waste as 44%, non-biodegradable waste as 56%, recyclable waste as 65% and non-recyclable waste as 35% at Site-1 whereas Site-2 revealed biodegradable, nonbiodegradable, recyclable and non-recyclable waste as 34%, 66%, 64% and 36% respectively. Since there is no waste management system prevalent, the recyclable waste, though in greater proportion is not recycled properly.
DOI: 10.17632/n7p2cmym6g
title: Fault-slip data from Triassic units of the Domeyko basin (Domeyko Range, northern Chile)

description: Fault-slip raw data used in the kinematic analysis of synsedimentary extensional faults from Triassic units (Sierra de Varas and lower Profeta Formation).
DOI: 10.25381/cput.28805690.v2
title: The integration and utilisation of HRIS in strategic employee performance at a textile factory in the Western Cape

description: <b>Clearance Certificate No | 2022_FBMSREC 060.</b>Transcriptions from the interviews conducted with thirty (30) participants at the Textile Factory.
DOI: 10.25403/upresearchdata.28368977.v1
title: Fate and behaviour of engineered nanoparticles in aqueous environments

description: The field of nanoecotoxicology has seen a steady increase in experimental data recently; yet, there is a lack of accessible nano databases for efficient analysis. The meta-data analysis and systematic review (MDASR) process, which makes use of secondary data extracted from literature reviews, was considered for developing this database. This process adhered to the guidelines of "Preferred reporting items for systematic reviews and meta-analyses" (PRISMA). GetData Graph Digitizer v.2.24 software (http://getdata-graph-digitizer.com/) was applied for extracting quantitative data embedded in figures. The identified inputs in this dataset include key information on the physical-chemical properties, water chemistry properties, and exposure conditions. These include shape, size, coating, ZP, solubility, and water chemistry factors such as NOM (dissolved organic carbon (DOC), total dissolved carbon (TOC), IS, pH, conductivity, and temperature, among others.
DOI: 10.6084/m9.figshare.19189652.v2
title: Supplementary Data

description: Supplementary Data
DOI: 10.6084/m9.figshare.5928151.v1
title: Custom HMM files

description: These are the protein sequences, alignments and HMM profiles for the custom protein families used in the article.
DOI: 10.6084/m9.figshare.2067093.v2
title: clinical discriptive.xlsx

description: data from "Altered activation in cerebellum contralateral to unilateral thalamotomy may mediate tremor suppression in Parkinson’s disease: A short-term regional homogeneity fMRI study".age, gender, disease duration, education, MMSE, mUPDRS, tremor
DOI: 10.6084/m9.figshare.22678153.v1
title: Spatiotemporal attentional neural ordinary differential equation

description: data and codes
DOI: 10.6084/m9.figshare.12032286.v1
title: Data from: "Water-Ion Permselectivity of Narrow Diameter Carbon Nanotubes"

description: Data from a manuscript "Water-Ion Permselectivity of Narrow Diameter Carbon Nanotubes". Contains data from all figures and supplementary figures in the manuscript. Submitted as a cumulative excel file with each figure on a separate tab, and as separate .csv files for each figure.
DOI: 10.4121/uuid:232d15bf-ce75-48f5-8a2c-e8e809b8333e
title: Classifying code comments in Java open-source software systems

description: A Java code comments classification dataset
DOI: 10.6084/m9.figshare.14832396.v3
title: BookChapter_ExcitedStatePropertyLearning_CaseStudy2

description: Data set and trained ML models for chapter 20 "Learning Excited State Properties" of "Quantum Chemistry in the Age of Machine Learning" edited by Pavlo Dral.
DOI: 10.6084/m9.figshare.23508849.v1
title: Biogeographic analysis raw data

description: This folder contains the data related with the biogeographical analyses
DOI: 10.17632/96sb28ft9n
title: Leukemia Classification

description: Contains ALL infected and normal non cancerous cells
DOI: 10.6084/m9.figshare.26064412.v1
title: <b><i>De novo</i></b><b> whole-genome assembly of </b><b>the 10-gigabase</b><b> </b><b><i>Fokienia hodginsii </i></b><b>genome to reveal differential epigenetic events between callus and xylem</b>

description: <i>Fokienia hodginsii</i><b><i> </i></b>(<i>F</i>.<i> hodginsii</i>), belonging to the genus Fokienia of the Cupressaceae, grows in evergreen broadleaf forest and exhibits a diversity of community type in subtropical zone. <i>F</i>.<i> hodginsii </i>has significant application value due to its wood properties. Additionally, it holds great research value in evolutionary studies as a gymnosperm. However, the genome<i> </i>of <i>F</i>.<i> hodginsii</i> remained unknown due to the challenges posed by repetitive sequences and the large size of gymnosperms genome. This study aimed to generate a chromosome-level genome of <i>F. hodginsii</i> and elucidate the epigenetic regulation in gymnosperms. We employed Pacific Bioscience sequencing, Hi-C mapping, whole-genome Bisulfite Sequencing (BS-Seq), long-read isoform sequencing (Iso-Seq), direct RNA sequencing (DRS), quantitative proteomics, and metabonomics analysis to facilitate genome assembly, gene annotation, and investigation into epigenetic mechanisms. In this study, we assembled the 10G <i>F</i>.<i> hodginsii </i>genome into 11 chromosomes. Furthermore, we annotated 50,521 protein-coding genes based on from different tissues and determined that 65% of <i>F</i>.<i> hodginsii </i>genome comprises repetitive sequences. We discovered that transposable element (TE)-including introns was associated with higher expression. The DNA methylome of <i>F</i>.<i> hodginsii </i>revealed that stem-differentiating xylem (SDX) had a higher DNA methylation level compared to callus. Quantitative proteomics revealed that up-regulated proteins in callus were enriched in KEGG pathways related to RNA degradation. Moreover, DRS revealed the significant alterations in RNA full-length ratio, which potentially associated with poly(A) length (PAL) and alternative polyadenylation (APA). Finally, the investigation of 14 different cultivars revealed difference in growth based on morphology measurement and metabonomics analysis. In summary, we generate <i>de novo </i>assembly on <i>F. hodginsii</i> genomes and epigenetics datasets, that provide a molecular basis for callus formation in the gymnosperm family.You can send any questions to ​lfgu@fafu.edu.cn by email.<br>
DOI: 10.6084/m9.figshare.13499148.v1
title: fortedata-1.0.2

description: This repo contains data products, formatted for broad audience use, associated with version 1.0.2 of the fortedata package (https://github.com/FoRTExperiment/fortedata)--which contains data from The Forest Resilience and Threshold Experiment (FoRTE).<br><br><br>