cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11506818
title: Raw data for the main figures of the paper: "Demixing fluorescence time traces transmitted by multimode fibers"

description: The files are the raw data for each main figure of the paper. 

For each figure, we included 2 tiff files (2 stacks of images): 

- The first one gives the measured footprints of the sources (ground truth). 

- The second one is the raw data (temporal sequence of images) acquired on the microscope for the specific experiment. This data is then fed to NMF algorithm for demixing.
DOI: 10.60712/si-id9652.2
title: StrainInfo SI-ID 9652.2

description: StrainInfo dataset 9652 about a strain of Streptomyces violascens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.8j66du
title: Occurrence Download

description: A dataset containing 788 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Caulerpa webbiana Mont.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 788 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086753-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id96608.2
title: StrainInfo SI-ID 96608.2

description: StrainInfo dataset 96608 about a strain of Fructobacillus durionis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97.2
title: StrainInfo SI-ID 97.2

description: StrainInfo dataset 97 about a strain of Acidovorax avenae subsp. avenae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97182.2
title: StrainInfo SI-ID 97182.2

description: StrainInfo dataset 97182 about a strain of Gulosibacter molinativorax. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97184.2
title: StrainInfo SI-ID 97184.2

description: StrainInfo dataset 97184 about a strain of Paeniglutamicibacter psychrophenolicus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97185.2
title: StrainInfo SI-ID 97185.2

description: StrainInfo dataset 97185 about a strain of Paenibacillus lactis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97186.2
title: StrainInfo SI-ID 97186.2

description: StrainInfo dataset 97186 about a strain of Brevundimonas mediterranea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id9749.2
title: StrainInfo SI-ID 9749.2

description: StrainInfo dataset 9749 about a strain of Phocaeicola vulgatus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id9751.2
title: StrainInfo SI-ID 9751.2

description: StrainInfo dataset 9751 about a strain of Lacticaseibacillus casei. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97523.2
title: StrainInfo SI-ID 97523.2

description: StrainInfo dataset 97523 about a strain of Micromonospora endolithica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.34691/uchile/6yuknp/1b42st
title: 3. Pantaleta de saco de harina-1.jpeg

description: :unav
DOI: 10.60712/si-id97526.2
title: StrainInfo SI-ID 97526.2

description: StrainInfo dataset 97526 about a strain of Nocardia puris. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97527.2
title: StrainInfo SI-ID 97527.2

description: StrainInfo dataset 97527 about a strain of Photorhabdus kayaii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id9753.2
title: StrainInfo SI-ID 9753.2

description: StrainInfo dataset 9753 about a strain of Fructilactobacillus fructivorans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97531.2
title: StrainInfo SI-ID 97531.2

description: StrainInfo dataset 97531 about a strain of Photorhabdus thracensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97532.2
title: StrainInfo SI-ID 97532.2

description: StrainInfo dataset 97532 about a strain of Psychrobacter pulmonis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97534.2
title: StrainInfo SI-ID 97534.2

description: StrainInfo dataset 97534 about a strain of Treponema putidum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97542.2
title: StrainInfo SI-ID 97542.2

description: StrainInfo dataset 97542 about a strain of Algoriphagus mannitolivorans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97543.2
title: StrainInfo SI-ID 97543.2

description: StrainInfo dataset 97543 about a strain of Algoriphagus halophilus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97544.2
title: StrainInfo SI-ID 97544.2

description: StrainInfo dataset 97544 about a strain of Algoriphagus ornithinivorans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97546.2
title: StrainInfo SI-ID 97546.2

description: StrainInfo dataset 97546 about a strain of Vibrio gallicus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id9755.2
title: StrainInfo SI-ID 9755.2

description: StrainInfo dataset 9755 about a strain of Lactobacillus helveticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97552.2
title: StrainInfo SI-ID 97552.2

description: StrainInfo dataset 97552 about a strain of Ulvibacter litoralis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.5281/zenodo.11506817
title: Raw data for the main figures of the paper: "Demixing fluorescence time traces transmitted by multimode fibers"

description: RawMovies.zip 

This zip file includes the raw movies for each main figure of the paper. 

For figures 02, 03, 04, 04 and 06, we included 2 tiff files (2 stacks of images): - The first one gives the measured footprints of the sources (ground truth). - The second one is the raw movie (temporal sequence of images) acquired on the microscope for the specific experiment. 

For figure 07, the tiff file corresponds to a movie acquired while moving a single fluorescent bead away from the optical axis of the microscope (as in figure 7c). 

RawRata.zip

This zip file contains raw data for figures 03, 04, 05 and 06. We have included two files for each figure:- the _gt file is a matrix of the GT time traces (dimensions: number of sources x number of time bins)- the other file is a 3D matrix corresponding to all the images acquired during the experiment. The first time frames are the measured footprints of each of the sources (ground truth). They were acquired by illuminating each source sequentially. The remaining frames correspond to the raw movie acquired during the experiment while illuminating the sources with the GT time traces. Dimensions of this 3D matrix are: (number of pixels in the x dimension) x (number of pixels in the y dimension) x (number of sources + number of time bins)

This raw data is the input data to the python analysis function located in :https://github.com/comediaLKB/DemixedFiberPhotometry.
DOI: 10.5281/zenodo.12087382
title: Raw data for the main figures of the paper: "Demixing fluorescence time traces transmitted by multimode fibers"

description: RawMovies.zip 

This zip file includes the raw movies for each main figure of the paper. 

For figures 02, 03, 04, 04 and 06, we included 2 tiff files (2 stacks of images): - The first one gives the measured footprints of the sources (ground truth). - The second one is the raw movie (temporal sequence of images) acquired on the microscope for the specific experiment. 

For figure 07, the tiff file corresponds to a movie acquired while moving a single fluorescent bead away from the optical axis of the microscope (as in figure 7c). 

RawRata.zip

This zip file contains raw data for figures 03, 04, 05 and 06. We have included two files for each figure:- the _gt file is a matrix of the GT time traces (dimensions: number of sources x number of time bins)- the other file is a 3D matrix corresponding to all the images acquired during the experiment. The first time frames are the measured footprints of each of the sources (ground truth). They were acquired by illuminating each source sequentially. The remaining frames correspond to the raw movie acquired during the experiment while illuminating the sources with the GT time traces. Dimensions of this 3D matrix are: (number of pixels in the x dimension) x (number of pixels in the y dimension) x (number of sources + number of time bins)

This raw data is the input data to the python analysis function located in :https://github.com/comediaLKB/DemixedFiberPhotometry.
DOI: 10.60712/si-id97555.2
title: StrainInfo SI-ID 97555.2

description: StrainInfo dataset 97555 about a strain of Agromyces albus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id9757.2
title: StrainInfo SI-ID 9757.2

description: StrainInfo dataset 9757 about a strain of Fructilactobacillus lindneri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id9758.2
title: StrainInfo SI-ID 9758.2

description: StrainInfo dataset 9758 about a strain of Lactiplantibacillus paraplantarum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97596.2
title: StrainInfo SI-ID 97596.2

description: StrainInfo dataset 97596 about a strain of Vibrio pacinii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97597.2
title: StrainInfo SI-ID 97597.2

description: StrainInfo dataset 97597 about a strain of Corynebacterium accolens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97605.2
title: StrainInfo SI-ID 97605.2

description: StrainInfo dataset 97605 about a strain of Curtobacterium flaccumfaciens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dof0ga
title: Hertfordshire Biological Records Centre - HBRC Wildlife Site Surveys, Hertfordshire

description: NBN Gateway Dataset GA001192
DOI: 10.60712/si-id97606.2
title: StrainInfo SI-ID 97606.2

description: StrainInfo dataset 97606 about a strain of Paenibacillus naphthalenovorans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97607.2
title: StrainInfo SI-ID 97607.2

description: StrainInfo dataset 97607 about a strain of Microvirga subterranea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97611.2
title: StrainInfo SI-ID 97611.2

description: StrainInfo dataset 97611 about a strain of Streptomyces speibonae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97613.2
title: StrainInfo SI-ID 97613.2

description: StrainInfo dataset 97613 about a strain of Vagococcus carniphilus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97618.2
title: StrainInfo SI-ID 97618.2

description: StrainInfo dataset 97618 about a strain of Sneathia sanguinegens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id9762.2
title: StrainInfo SI-ID 9762.2

description: StrainInfo dataset 9762 about a strain of Lactobacillus delbrueckii subsp. delbrueckii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97622.2
title: StrainInfo SI-ID 97622.2

description: StrainInfo dataset 97622 about a strain of Bowdeniella nasicola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97643.2
title: StrainInfo SI-ID 97643.2

description: StrainInfo dataset 97643 about a strain of Corynebacterium aquilae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97646.2
title: StrainInfo SI-ID 97646.2

description: StrainInfo dataset 97646 about a strain of Kosakonia cowanii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97647.2
title: StrainInfo SI-ID 97647.2

description: StrainInfo dataset 97647 about a strain of Petrotoga mexicana. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97650.2
title: StrainInfo SI-ID 97650.2

description: StrainInfo dataset 97650 about a strain of Garciella nitratireducens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97654.2
title: StrainInfo SI-ID 97654.2

description: StrainInfo dataset 97654 about a strain of Clostridium psychrophilum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97656.2
title: StrainInfo SI-ID 97656.2

description: StrainInfo dataset 97656 about a strain of Conexibacter woesei. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97661.2
title: StrainInfo SI-ID 97661.2

description: StrainInfo dataset 97661 about a strain of Oceanisphaera litoralis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97662.2
title: StrainInfo SI-ID 97662.2

description: StrainInfo dataset 97662 about a strain of Nocardiopsis aegyptia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97664.2
title: StrainInfo SI-ID 97664.2

description: StrainInfo dataset 97664 about a strain of Amycolatopsis keratiniphila. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97665.2
title: StrainInfo SI-ID 97665.2

description: StrainInfo dataset 97665 about a strain of Amycolatopsis balhimycina. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97666.2
title: StrainInfo SI-ID 97666.2

description: StrainInfo dataset 97666 about a strain of Amycolatopsis vancoresmycina. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97667.2
title: StrainInfo SI-ID 97667.2

description: StrainInfo dataset 97667 about a strain of Amycolatopsis decaplanina. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97670.2
title: StrainInfo SI-ID 97670.2

description: StrainInfo dataset 97670 about a strain of Thiorhodococcus drewsii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97671.2
title: StrainInfo SI-ID 97671.2

description: StrainInfo dataset 97671 about a strain of Nocardiopsis alkaliphila. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97673.2
title: StrainInfo SI-ID 97673.2

description: StrainInfo dataset 97673 about a strain of Thalassotalea ganghwensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id97674.2
title: StrainInfo SI-ID 97674.2

description: StrainInfo dataset 97674 about a strain of Enterovibrio norvegicus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.zgbmn2
title: Occurrence Download

description: A dataset containing 684005 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Achillea millefolium L."
 ]
}

 The dataset includes 684005 records from 963 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062524-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.56689s
title: Occurrence Download

description: A dataset containing 1732 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tadarida aegyptiaca (E.Geoffroy, 1818)"
 ]
}

 The dataset includes 1732 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014372-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.