cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/kpxaq-nxg48
title: P. aeruginosa T6SS minicell

description: Pseudomonas JT1599Grid box YWC247
description: <strong>Tilt Series Date:</strong> 2017-04-14</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain from Jonida Toska at John Mekalanos lab</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-04-14-12/rawdata/</p>20170414_YWC247_10021.mrc,  Tilt Series (Pixel Size 0.39 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-04-14-12/rawdata/20170414_YWC247_10021.mrc"
        > <i class="download icon"></i> Download </a></p>

        20170414_YWC247_10021_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-04-14-12/3dimage_83666/20170414_YWC247_10021_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/6b3rb-7ev29
title: Cos7 cells

description: Synchronized Cos7 cells, looking for midbodies
description: <strong>Tilt Series Date:</strong> 2015-01-20</p>
<strong>Data Taken By:</strong> Rasika Ramdasi</p>
<strong>Species / Specimen:</strong> Cos7</p>
<strong>Strain:</strong> Cos7 cells</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSF tomo</p>
<strong>Sample Preparation:</strong> Synchronized Cos7 cells with siRNA NUP 153 and Thymidine 2mM</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2015-01-20-19/rawdata/</p>cos70002.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2015-01-20-19/rawdata/cos70002.mrc"
        > <i class="download icon"></i> Download </a></p>

        cos70002_full.rec,  Reconstruction (Pixel Size 2.4 nm), 623.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2015-01-20-19/3dimage_51166/cos70002_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/gwv4e-q3797
title: NR1769/R1-16 conjugation

description: Grid box YWC231 grid1NR1769/R1-16 conjugating with NR1769 skinny E. coli(mixed for 5 min prior to freezing)
description: <strong>Tilt Series Date:</strong> 2016-11-16</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain and sample prepared by Carrie Shaffer</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-11-16-6/3dimage_79737/</p>20161116_YWC231-1_20006_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-11-16-6/3dimage_79737/20161116_YWC231-1_20006_full.rec"
        > <i class="download icon"></i> Download </a></p>

        20161116_YWC231-1_20006.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-11-16-6/rawdata/20161116_YWC231-1_20006.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/pps96-b6a62
title: NR1769/R1-16 conjugation

description: Grid box YWC234
description: <strong>Tilt Series Date:</strong> 2016-12-08</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain and sample prepared by Carrie Shaffer</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-12-08-77/3dimage_79997/</p>20161208_YWC234_10077_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-12-08-77/3dimage_79997/20161208_YWC234_10077_full.rec"
        > <i class="download icon"></i> Download </a></p>

        20161208_YWC234_10077.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-12-08-77/rawdata/20161208_YWC234_10077.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.16903249
title: MALDI-FT-ICR-MS dataset on millimeter-scale stratification of microbial communities in hydrothermal sediments (Guaymas Basin, core 5000-9)

description: Dataset descriptionThis dataset contains MALDI-FT-ICR-MS feature tables and complementary µXRF elemental data from hydrothermal sediment core 5000-9 from the Cathedral Hill mat complex in the southern Guaymas Basin spreading center (AT42-05 deployment; Nov. 15-29, 2018, Dive 5000).

The file names follow the structure:mz_XXX-YYY → the m/z range of the CASI (Continuous Accumulation of Selected Ions) window used during acquisition (e.g., mz_320-460 corresponds to features detected between m/z 320 and 460).

DAN / DHB → the MALDI matrix used:DAN = 1,5-diaminonaphthalene (measured in negative ionization mode)DHB = 2,5-dihydroxybenzoic acid (measured in positive ionization mode)GB5000-9 → sediment core 5000-9 from the Cathedral Hill mat complex, Guaymas Basin.

Each feature table contains:m/z values and their normalized intensities (normalized to the median peak intensity of each spectrum)Spatial coordinates (x,y) of each spectrum across the sediment sectionAdditional column R (Region), indicating the measured sediment interval:R0 = 0 – 6.1 cm below seafloorR5 = 6.1 – 11.5 cm below seafloor

The folder GB5000-9_DataAnalysis_Export_TXT contains the SNR-filtered (SNR > 4) raw data exported from DataAnalysis (Bruker Daltonik). These files include intensity, SNR, and spatial coordinates (x, y). File names indicate the m/z window, sediment depth, and whether the measurement was performed with 1,5-DAN in negative ionization mode or 2,5-DHB in positive ionization mode.

Data preprocessing included lock-mass calibration and signal-to-noise (SNR) filtering (threshold of 4) to remove instrumental noise while retaining low-intensity but potentially meaningful features. 

Measurements were acquired on a 7T solariX XR FTICR-MS equipped with a Smartbeam II MALDI laser (Bruker Daltonik, Bremen, Germany). Detailed measurement parameters (laser settings, CASI windows) are available in the accompanying Excel file (Measurement_parameters_5000-9_MALDI_FT_ICR_MS).

µXRF elemental data

Two folders, S0559_GB5000-9_µXRF and S0601_GB5000-9_µXRF, contain elemental maps corresponding to the sediment sections with measurements performed using an M4 Tornado system (Bruker Nano GmbH, Berlin, Germany), equipped with an Rh source (50 kV, 600 µA) and poly-capillary optics.

Together, these datasets provide high-resolution molecular and elemental information across the hydrothermal sediments of Guaymas Basin sediment core 5000-9.
DOI: 10.5281/zenodo.16903250
title: MALDI-FT-ICR-MS dataset on millimeter-scale stratification of microbial communities in hydrothermal sediments (Guaymas Basin, core 5000-9)

description: Dataset descriptionThis dataset contains MALDI-FT-ICR-MS feature tables and complementary µXRF elemental data from hydrothermal sediment core 5000-9 from the Cathedral Hill mat complex in the southern Guaymas Basin spreading center (AT42-05 deployment; Nov. 15-29, 2018, Dive 5000).

The file names follow the structure:mz_XXX-YYY → the m/z range of the CASI (Continuous Accumulation of Selected Ions) window used during acquisition (e.g., mz_320-460 corresponds to features detected between m/z 320 and 460).

DAN / DHB → the MALDI matrix used:DAN = 1,5-diaminonaphthalene (measured in negative ionization mode)DHB = 2,5-dihydroxybenzoic acid (measured in positive ionization mode)GB5000-9 → sediment core 5000-9 from the Cathedral Hill mat complex, Guaymas Basin.

Each feature table contains:m/z values and their normalized intensities (normalized to the median peak intensity of each spectrum)Spatial coordinates (x,y) of each spectrum across the sediment sectionAdditional column R (Region), indicating the measured sediment interval:R0 = 0 – 6.1 cm below seafloorR5 = 6.1 – 11.5 cm below seafloor

The folder GB5000-9_DataAnalysis_Export_TXT contains the SNR-filtered (SNR > 4) raw data exported from DataAnalysis (Bruker Daltonik). These files include intensity, SNR, and spatial coordinates (x, y). File names indicate the m/z window, sediment depth, and whether the measurement was performed with 1,5-DAN in negative ionization mode or 2,5-DHB in positive ionization mode.

Data preprocessing included lock-mass calibration and signal-to-noise (SNR) filtering (threshold of 4) to remove instrumental noise while retaining low-intensity but potentially meaningful features. 

Measurements were acquired on a 7T solariX XR FTICR-MS equipped with a Smartbeam II MALDI laser (Bruker Daltonik, Bremen, Germany). Detailed measurement parameters (laser settings, CASI windows) are available in the accompanying Excel file (Measurement_parameters_5000-9_MALDI_FT_ICR_MS).

µXRF elemental data

Two folders, S0559_GB5000-9_µXRF and S0601_GB5000-9_µXRF, contain elemental maps corresponding to the sediment sections with measurements performed using an M4 Tornado system (Bruker Nano GmbH, Berlin, Germany), equipped with an Rh source (50 kV, 600 µA) and poly-capillary optics.

Together, these datasets provide high-resolution molecular and elemental information across the hydrothermal sediments of Guaymas Basin sediment core 5000-9.
DOI: 10.22002/0507h-nem51
title: minicell typeV CDI+ trunc  #108

description: Raw data files of minicell typeV CDI+ trunc  #108
description: <strong>Tilt Series Date:</strong> 2015-05-09</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -15.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
<strong>Collaborators and Roles:</strong> Chris Hayes and David Low UCSB</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-05-09-23/rawdata/</p>truncated108_atlas20005.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-05-09-23/rawdata/truncated108_atlas20005.mrc"
        > <i class="download icon"></i> Download </a></p>

        truncated108_atlas20005.rec,  Reconstruction (Pixel Size 1.28 nm), 889.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-05-09-23/3dimage_56278/truncated108_atlas20005.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/0dajt-spr22
title: twitching Pseudomonas delta-pilH

description: Box YWC213delta-pilH hyperpiliated mutantCells incubated on mucin-coated grid to promote twitching
description: <strong>Tilt Series Date:</strong> 2016-05-31</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Sample prepared in collaboration with Alex Persat</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-05-31-7/rawdata/</p>20160531_YWC213_10006.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-05-31-7/rawdata/20160531_YWC213_10006.mrc"
        > <i class="download icon"></i> Download </a></p>

        20160531_YWC213_10006_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-05-31-7/3dimage_75033/20160531_YWC213_10006_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/qp89p-jmg10
title: P. aeruginosa T6SS minicell

description: Pseudomonas JT1599Grid box YWC247
description: <strong>Tilt Series Date:</strong> 2017-04-14</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain from Jonida Toska at John Mekalanos lab</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-04-14-84/rawdata/</p>20170414_YWC247_10093.mrc,  Tilt Series (Pixel Size 0.39 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-04-14-84/rawdata/20170414_YWC247_10093.mrc"
        > <i class="download icon"></i> Download </a></p>

        20170414_YWC247_10093_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-04-14-84/3dimage_83808/20170414_YWC247_10093_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/cdmvx-07p57
title: NR1769/R1-16 conjugation

description: Grid box YWC234
description: <strong>Tilt Series Date:</strong> 2016-12-08</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain and sample prepared by Carrie Shaffer</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-12-08-17/3dimage_79879/</p>20161208_YWC234_10017_part121_42.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-12-08-17/3dimage_79879/20161208_YWC234_10017_part121_42.rec"
        > <i class="download icon"></i> Download </a></p>

        20161208_YWC234_10017.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-12-08-17/rawdata/20161208_YWC234_10017.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/h0vew-na144
title: Caulobacter del-tipN + Nal

description: delta-tipN (strain 5993)+ 20 mg/ml Nalidixic acid for 5hr
description: <strong>Tilt Series Date:</strong> 2017-11-30</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain from Patrick Viollier</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-11-30-29/rawdata/</p>20171130_YWC267_10029.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-11-30-29/rawdata/20171130_YWC267_10029.mrc"
        > <i class="download icon"></i> Download </a></p>

        20171130_YWC267_10029_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-11-30-29/3dimage_90861/20171130_YWC267_10029_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/n0sgr-bx487
title: P41 tomogram data

description: Raw data files of P41 tomogram data
description: <strong>Tilt Series Date:</strong> 2016-01-14</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> Mycoplasma pneumoniae</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Edward Sheppard from Duncan Krause's lab prepared the cell culture</p>
  scy2016-01-14-5_slicer16571.jpg: Attachment organelle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2016-01-14-5/3dimage_72620/</p>atlas10005_full.rec,  Reconstruction (Pixel Size 1.56 nm), 356.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2016-01-14-5/3dimage_72620/atlas10005_full.rec"
        > <i class="download icon"></i> Download </a></p>

        atlas10005.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2016-01-14-5/rawdata/atlas10005.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ey02m-g1j63
title: wt_perfusion

description: There are wt preanaerobically grown perfusion samples.
description: <strong>Tilt Series Date:</strong> 2017-05-26</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2.0°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -7.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> autoPatch</p>
<strong>Collaborators and Roles:</strong> Sahand and Moh</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2017-05-26-40/3dimage_84869/</p>grid40001.rec,  Reconstruction (Pixel Size 1.92 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2017-05-26-40/3dimage_84869/grid40001.rec"
        > <i class="download icon"></i> Download </a></p>

        grid40001.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2017-05-26-40/rawdata/grid40001.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9gfte-7ng65
title: P41 tomogram data

description: Raw data files of P41 tomogram data
description: <strong>Tilt Series Date:</strong> 2016-01-15</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> Mycoplasma pneumoniae</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Edward Sheppard from Duncan Krause's lab prepared the cell culture</p>
  scy2016-01-15-1_slicer16573.jpg: Filament scy2016-01-15-1_slicer16572.jpg: Attachment organelle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2016-01-15-1/3dimage_72624/</p>atlas10006_full.rec,  Reconstruction (Pixel Size 1.56 nm), 356.4 MB  
        
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        atlas10006.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.7 GB  
        
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