cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5703668
title: Paulinella micropora KR01 assembled transcripts

description: Description of files: <strong>5RACE_Combined_D_L_assembly.fa</strong> Transcripts assembled from 5-prime enriched RNA sequencing reads (cap-switching transcripts). Read data available from NCBI’s SRA repository (BioProject ID PRJNA730897). <strong>Standard_RNAseq_transcripts.fa</strong> Transcripts assembled from standard RNA sequencing reads (standard transcripts) that align to the <em>P. micropora </em>KR01 genome. Read data available from NCBI’s SRA repository (BioProject ID PRJNA568118). <strong>5RACE_Combined_D_L_assembly_mapped.seqnames.txt</strong> Names of the cap-switching transcripts that align to the <em>P. micropora </em>KR01 genome. <strong>5RACE_Combined_D_L_assembly_unmapped.seqnames.txt</strong> Names of the cap-switching transcripts that no not align to the <em>P. micropora </em>KR01 genome. <strong>5RACE_SL_Transcripts.seqnames.txt</strong> Names of the cap-switching transcripts that align to the <em>P. micropora </em>KR01 genome and encode a <em>Paulinella</em> spliced-leader sequence. <strong>5RACE_SL_Transcripts_unique2RACE.seqnames.txt</strong> Names of the cap-switching transcripts that align to the <em>P. micropora </em>KR01 genome, encode a <em>Paulinella</em> spliced-leader sequence, and are unique to the cap-switching dataset (i.e., are not encoded in the standard transcripts). <strong>Standard_RNAseq_SL_transcripts.seqnames.txt</strong> Names of the standard transcripts that align to the <em>P. micropora </em>KR01 genome and encode a <em>Paulinella</em> spliced-leader sequence.
DOI: 10.15468/q24ms4
title: A new species of Aetanthus (Loranthaceae) from Colombia with notes on A. engelsii

description: This dataset contains the digitized treatments in Plazi based on the original journal article Murillo-Serna, Jhon S., Roldán-Palacio, Francisco J., Carmona-Gallego, Isabel, Alzate, Fernando (2021): A new species of Aetanthus (Loranthaceae) from Colombia with notes on A. engelsii. Candollea 76 (1): 71-76, DOI: 10.15553/c20121v761a6
DOI: 10.6084/m9.figshare.16992013.v3
title: Supplemental Data_Exercise Reduces the Protein Abundance of TXNIP and Its Interacting Partner REDD1 in Skeletal Muscle: Potential Role for a PKA-Mediated Mechanism

description: Supplemental Data for the Manuscript entitled, "Exercise Reduces the Protein Abundance of TXNIP and Its Interacting Partner REDD1 in Skeletal Muscle: Potential Role for a PKA-Mediated Mechanism".
DOI: 10.6084/m9.figshare.17044568
title: Vaccine Risk combined data

description: Potential vaccine risk indicators at country level. <br>
DOI: 10.5281/zenodo.5711324
title: Dataset for the tutorial of supeRbaits R package

description: Dataset for the tutorial of the R package "supeRbaits" (https://github.com/BelenJM/supeRbaits)
DOI: 10.5281/zenodo.5711323
title: Dataset for the tutorial of supeRbaits R package

description: Dataset for the tutorial of the R package "supeRbaits" (https://github.com/BelenJM/supeRbaits)
DOI: 10.15468/a8xygn
title: Pandanus papateaensis (Pandanaceae): une nouvelle espèce menacée de l’atoll soulevé de Makatea (Tuamotu, Polynésie française)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Butaud, Jean-François, Jacq, Frédéric, Callmander, Martin W. (2019): Pandanus papateaensis (Pandanaceae): une nouvelle espèce menacée de l’atoll soulevé de Makatea (Tuamotu, Polynésie française). Candollea 74 (2): 137-144, DOI: 10.15553/c2019v742a3
DOI: 10.15468/nqmywv
title: Phelipanche chionistrae (Orobanchaceae): a new holoparasitic species from Cyprus

description: This dataset contains the digitized treatments in Plazi based on the original journal article Rätzel, Stefan, Hand, Ralf, Christodoulou, Charalambos S., Uhlich, Holger (2021): Phelipanche chionistrae (Orobanchaceae): a new holoparasitic species from Cyprus. Candollea 76 (1): 77-82, DOI: 10.15553/c2021v761a7
DOI: 10.5517/ccdc.csd.cc28xfzm
title: CCDC 2112711: Experimental Crystal Structure Determination

description: Related Article: Hui Peng, Yonghao Xiao, Ye Tian, Xinxin Wang, Tao Huang, Tiantian Dong, Yueting Zhao, Jianping Wang, Bingsuo Zou|2021|J.Mater.Chem.C|9|16014|doi:10.1039/D1TC04011A
DOI: 10.5517/ccdc.csd.cc278zk2
title: CCDC 2064214: Experimental Crystal Structure Determination

description: Related Article: Dominique M. Brager, Aaron D. Nicholas, Mark H. Schofield, Christopher L. Cahill|2021|Inorg.Chem.|60|17186|doi:10.1021/acs.inorgchem.1c02518
DOI: 10.5517/ccdc.csd.cc278zm4
title: CCDC 2064216: Experimental Crystal Structure Determination

description: Related Article: Dominique M. Brager, Aaron D. Nicholas, Mark H. Schofield, Christopher L. Cahill|2021|Inorg.Chem.|60|17186|doi:10.1021/acs.inorgchem.1c02518
DOI: 10.5517/ccdc.csd.cc278zn5
title: CCDC 2064217: Experimental Crystal Structure Determination

description: Related Article: Dominique M. Brager, Aaron D. Nicholas, Mark H. Schofield, Christopher L. Cahill|2021|Inorg.Chem.|60|17186|doi:10.1021/acs.inorgchem.1c02518
DOI: 10.15787/vtt1/zujsap
title: External Communication on Other Road User Behavior Study Data (VTTI-00-027)

description: Project Description: The purpose of this study was to evaluate specific HAV external communication design parameters in both static and dynamic settings and from a driver or pedestrian road user perspectives. Data Scope: Forty participants observed external communication displays on two vehicles that emulated L4+ AVs. Every participant viewed eight different testing scenarios that were repeated for multiple trials. The eight scenarios were split between pedestrian and passenger perspectives. When participants were experiencing the pedestrian scenarios, they would make crossing decisions and complete rankings on their understanding of the displays. When participants were experiencing the passenger scenarios, they would observe the scenario and complete ratings on their understanding. Data Specification: Please see Data Dictionary file for more information.
DOI: 10.6084/m9.figshare.16955719
title: Supplementary data for the paper: Nesterov et al. High ROMK in DCT2/CNT

description: Additional figures for the paper "High baseline ENaC activity in mouse late distal convoluted and early connecting tubule (DCT2/CNT) probably contributes to aldosterone-independent K+ secretion"<br>
DOI: 10.6084/m9.figshare.16955719.v1
title: Nesterov_et_al_High_ROMK_in_DCT2_CNT.pdf

description: Additional figures for the paper "High baseline ENaC activity in mouse late distal convoluted and early connecting tubule (DCT2/CNT) probably contributes to aldosterone-independent K+ secretion"<br>
DOI: 10.6084/m9.figshare.17043086.v1
title: Output files from ipyrad

description: All output files generated by running the raw GBS data through the ipyad pipeline.
DOI: 10.18739/a23775w59
title: Near-surface ocean temperature & salinity measurements (using YSI and Castaway) during the summer component of the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) campaign in the Central Arctic Ocean, July – September 2020

description: This dataset contains upper ocean temperature and salinity profiles made during July – September, 2020 as part of the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) expedition in the Central Arctic. The primary aim of these profiles was to capture the stratification of the upper ocean due to meltwater input throughout the summer melt season and the transition to fall freeze-up. The dataset includes data from two instruments: (i) YSI probe, and (ii) Sontek Castaway. The YSI probe was used to take point measurements of temperature and salinity, allowing for more fine-scale profiles in the upper couple of meters. The Sontek Castaway is a small conductivity, temperature, and depth (CTD) device that was used to make profiles over the upper 10s of meters, here typically in complement to the YSI observations, and are processed to 15 centimeters (cm) vertical resolution. Profiles were made in two primary locations: (i) near-surface of leads surrounding the sea ice floe, using both YSI and Castaway, and (ii) upper ocean directly beneath the sea ice, typically using YSI only. A small number of additional observations were made in coincident melt ponds and the upper ocean directly underneath. Details of collection and processing methods, including quality control for both instruments, can be found in data archive descriptions.
DOI: 10.6084/m9.figshare.17045711
title: Supplemental datasheet

description: Master spreadsheet with raw counts, normalized TPM, and differential gene expression analysis of ES-1 grown on thiosulfate and Fe(II)-citrate
DOI: 10.6084/m9.figshare.17045711.v1
title: Supplemental datasheet

description: Master spreadsheet with raw counts, normalized TPM, and differential gene expression analysis of ES-1 grown on thiosulfate and Fe(II)-citrate
DOI: 10.34808/bkc4-9z29
title: Heart rate PPG signals with acceleration captured at wrist during small and moderate body movements

description: Heart rate PPG signals with acceleration captured at wrist during small and moderate body movements
130 waveforms of approx. length of 32 seconds each have been captured from 3 different persons.
Each waveform is saved in single data file in Matlab 'mat' format. File names are: pulse_realXXXX.mat, where XXXX= 0001...0130
Each single waveform consists of 1024 samples with:
dataTim - time in [ms]
dataPPG - measured raw PPG signal
dataAcc_x - measured acceleration in X axis in [mg]
dataAcc_y - measured acceleration in Y axis in [mg]
dataAcc_z - measured acceleration in Z axis in [mg]
targetHrX - times of ideal (target) PPG, calculated according to [1]
targetHrY - values of ideal (target) PPG, calculated according to [1]

The signals have been sampled with 1/32ms sampling frequency.
For each 32-second signal, each person wearing the sensor was asked not to move for a few seconds at the beginning and end of the sampling time. In this way the automatic peak detection algorithm was able to correctly detect the peaks and the beginning and at the end of each signal. Those two movement-free periods at the beginning and at the end have been used for generation of target PPG. The middle part of each signal, which was distorted by the movement, contains multiple false peaks which are the result of the movements. The target pulse has been extrapolated basing on the undisturbed data at the beginning and end of the waveform.
References:
[1] M. Wojcikowski and B. Pankiewicz, "Photoplethysmographic Time-Domain Heart Rate Measurement Algorithm for Resource-Constrained Wearable Devices and its Implementation," Sensors, vol. 20, no. 6, Mar 2020, Art no. 1783, doi: 10.3390/s20061783.
DOI: 10.34808/d03p-7855
title: IKE1-IKE3 (C-1305 derivatives) inhibitory effect of the Yeast Topoisomerase II relaxation activity

description: Inhibition of Yeast Topoisomerase II were analyzed according to relaxation assay kit  from Inspiralis. Briefly, 250 ng of supercoiled pBR322 DNA, 1 mM ATP, 1-200 μM of analyzed compound were mixed with reaction buffer (1 mM Tris-HCl (pH 7.9), 10 mM KCl, 0.5 mM MgCl 2, 0.2 % (v/v) glycerol). The reaction was initiated by the addition of an enzyme, allowed to proceed at 30°C for 30 min and terminated by addition of 40% (w/v) sucrose, 100 mM Tris-HCl pH 8, 10 mM EDTA, 0.5 mg mL -1 Bromophenol Blue. Two step extraction with chloroform:isoamyl alcohol (24:1) and butanol water were made and mixtures were analyzed on the 1% agarose gel in 1x TAE buffer, 3h, 4.5 V cm -1. Gel was  stained in GelRed 3x staining solution for 30 min and photographed with Gel Doc XR+Gel Documentation System.
DOI: 10.34943/98c54781-3075-4f63-a4f4-c23d51d1ff19
title: Chatham Sound Junction Box Deployed 2021-10-12

description: The ONC Mini Junction Box 018 was deployed on 2021-10-12 at Chatham Sound. Chatham Sound is a sound on the North Coast of British Columbia, located between Dundas and Stephens Islands and the Tsimpsean Peninsula near Prince Rupert. This device is a Junction Box. Junction Boxes supply power and communications to deployed instruments. Junction boxes have a number of serial and ethernet ports, including 400V ethernet ports that enable connections to other junction boxes and high-voltage instruments. Junction boxes can convert high voltages to lower voltages (15V, 24V or 48V) required by many instruments. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 2.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.15468/r3m78d
title: Découverte à La Réunion de Elaphoglossum multisquamosum (Dryopteridaceae), connue jusqu’alors comme endémique de Madagascar

description: This dataset contains the digitized treatments in Plazi based on the original journal article Robert, Yannis, Thomas, Hermann, Tamon, Jean Maurice, Rouhan, Germinal (2021): Découverte à La Réunion de Elaphoglossum multisquamosum (Dryopteridaceae), connue jusqu’alors comme endémique de Madagascar. Candollea 76 (1): 99-104, DOI: 10.15553/c2021v761a10
DOI: 10.6073/pasta/a197c6b52fc64e70cf68a9d52f076170
title: Bonanza Creek LTER: Hourly Photosynthetically Active Radiation (PAR) Measurements from 1988 to Present in the Bonanza Creek Experimental Forest and the Caribou-Poker Creeks Research Watershed near Fairbanks, Alaska

description: PAR sensors measure solar radiation in the 400 to 700 nm waveband in microEinsteins per sq. m. per second. The average hourly reading is converted to microEinsteins per sq. m. per hour and summed over 24 hours to obtain daily Einsteins per sq. m. Sensors are removed at the end of September for annual calibrations and replaced back at the sites by the first of May each year.
DOI: 10.15468/2f7cz5
title: A taxonomic revision of Melanoxerus (Rubiaceae), with descriptions of three new species of trees from Madagascar

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kainulainen, Kent (2021): A taxonomic revision of Melanoxerus (Rubiaceae), with descriptions of three new species of trees from Madagascar. Candollea 76 (1): 105-116, DOI: 10.15553/c2021v761a11
DOI: 10.6073/pasta/8a60deeb7d7e9b1abbebd0af8c773321
title: MCR LTER: Coral Reef: Long-term Population and Community Dynamics: Fishes, ongoing since 2005

description: These data describe the species abundance and size distributions of fishes surveyed as part of MCR LTER's annual reef fish monitoring program. This study began in 2005 and the dataset is updated annually. The abundances of all mobile taxa of fishes (Scarids, Labrids, Acanthurids, Serranids, etc.) observed on a five by fifty meter transect which extends from the bottom to the surface of the water column are recorded by a diver using SCUBA. The diver then swims back along a one by fifty meter section of the original transect line and records the abundances of all non-mobile or cryptic taxa of fishes (Pomacentids, Gobiids, Cirrhitids, Holocentrids etc). Surveys are conducted between 0900 and 1600 hours (Moorea time) during late July or early August each year. In 2006, divers also began to estimate the size (length) of each fish observed to the nearest half cm. Four replicate transects are surveyed in each of six locations on the forereef (two on each of Moorea's three sides), six locations on the backreef (two on each of Moorea's three sides) and on six locations on the fringing reef (two on each of Moorea's three sides) for a total of 72 individual transects. Transects are permanently marked using a series of small, stainless steel posts affixed to the reef. Transects on the forereef are located at a depth of approximately 12m, those on the backreef are located at a depth of approximately 1.5m and those on the fringing reef are located at a depth of approximately 10m. In addition to the biotic data collected, divers also record data on the date and time each transect was surveyed, wind speed and sea state, swell height in m, amount of cloud cover in % and horizontal visability in m. This monitoring program is consistent with the protocols adopted by the Global Coral Reef Monitoring Network and the Australian Institute of Marine Science for use with the Great Barrier Reef Long-term Monitoring Program. This material is based upon work supported by the U.S. National Science Foundation under Grant No. OCE 16-37396 (and earlier awards) as well as a generous gift from the Gordon and Betty Moore Foundation. Research was completed under permits issued by the French Polynesian Government (Délégation à la Recherche) and the Haut-commissariat de la République en Polynésie Francaise (DTRT) (Protocole d'Accueil 2005-2021). This work represents a contribution of the Moorea Coral Reef (MCR) LTER Site.
DOI: 10.5281/zenodo.5711711
title: Database of a pilot USF developed in the Flexsim Healthcare program.

description: The database presented is included in my master's thesis project. This includes data from simulated query times over a year. Five different tables (A, B, C, D and E) are presented with the application of different variations in patient arrivals.
DOI: 10.5281/zenodo.5645793
title: A NATIONAL STUDY OF SEROPREVALENCE OF COVID-19 INFECTION IN THE POPULATION OF THE REPUBLIKA SRPSKA

description: Results of population-based age stratified seroepidemiological investigation in the Republika Srpska.
DOI: 10.5281/zenodo.5645792
title: A NATIONAL STUDY OF SEROPREVALENCE OF COVID-19 INFECTION IN THE POPULATION OF THE REPUBLIKA SRPSKA

description: Results of population-based age stratified seroepidemiological investigation in the Republika Srpska.
DOI: 10.5281/zenodo.5706332
title: The Carbon Footprint of Astronomical Research Infrastructures

description: This record contains the data and scripts used for the paper "The Carbon Footprint of Astronomical Research Infrastructures". The Python script "adsquery.py" queries the ADS database to extract the information on the number of papers and the number of authors attributed to a given research infrastructure for the paper. The Python script "bootstrap.py" extrapolates the carbon footprint from a selected number of astronomical research infrastructures to all astronomical facilities that were active in 2019. The file "ri-carbon-footprint.xls" contains all activity data and emission factors used for the work and all the results that were produced from these data.
DOI: 10.15482/usda.adc/1524260
title: iStitch: GUI-based Image Stitching Software
DOI: 10.6084/m9.figshare.3761562.v2047
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.12153003.v2
title: Tertiary Study Package on Technical Debt and its Management

description: Lab package containing: <b>(i) </b>sheets with information about the Secondary Studies (SS) on Tecnical Debt included in theseTertiary Study. The information refers to demographic data of SS, its quality assessment, and the complete list of the primary studies included in such SS;<b>(ii)</b> the archive with the coding process (analysis) performed by using the QDA miner Lite Tool, and the Grounded Theory;<br>
DOI: 10.6084/m9.figshare.12153003.v3
title: Tertiary Study Package on Technical Debt and its Management

description: Lab package containing: <b>(i) </b>sheets with information about the Secondary Studies (SS) on Tecnical Debt included in theseTertiary Study. The information refers to demographic data of SS, its quality assessment, and the complete list of the primary studies included in such SS;<b>(ii)</b> the archive with the coding process (analysis) performed by using the QDA miner Lite Tool, and the Grounded Theory;<br>
DOI: 10.5281/zenodo.5710300
title: Telemedicine for diabetes in Norway: Scoping review appendices

description: Contains appendices: - Appendix 1: Full search strategy - Appendix 2: List of publications that were rejected during the full-text review and exclusion reasons
DOI: 10.15482/usda.adc/1524261
title: Data from: Testing the role of body size and litter depth on invertebrate diversity across six forests in North America
DOI: 10.6084/m9.figshare.17045981
title: MAGs contigs & profile database

description: These are the final contigs and profile databases, generated in anvio v.7, which contain assembled metagenomic sequences for all kelp-associated bacterial genomes. <br>For more information on contigs & profile databases, see:https://merenlab.org/software/anvio/help/7/artifacts/contigs-db/https://merenlab.org/software/anvio/help/7/artifacts/profile-db/<br>
DOI: 10.6084/m9.figshare.17045981.v1
title: MAGs contigs & profile database

description: These are the final contigs and profile databases, generated in anvio v.7, which contain assembled metagenomic sequences for all kelp-associated bacterial genomes. <br>For more information on contigs & profile databases, see:https://merenlab.org/software/anvio/help/7/artifacts/contigs-db/https://merenlab.org/software/anvio/help/7/artifacts/profile-db/<br>
DOI: 10.6073/pasta/ff37f47d27b4a7d4fba6a09b41d7f964
title: Carbon Dynamics Along a Permafrost Gradient at Caribou-Poker Creeks Research Watershed (CPCRW) in Interior Alaska: Active Layer Depth (ALD) in a 75x75m spatial domain along a permafrost and vegetation gradient.

description: This dataset includes active layer depth (ALD) data across a 75x75m spatial domain in the Caribou-Poker Creeks Research Watershed. Project summary: Specific leaf area (SLA, leaf area per unit dry mass) is a key canopy structural characteristic, a measure of photosynthetic capacity, and an important input into many terrestrial process models. Although many studies have examined SLA variation, relatively few data exist from high latitude, climate-sensitive permafrost regions. We measured SLA and soil and topographic properties across a boreal forest permafrost transition, in which forest composition changed as permafrost deepened from 54 to &gt;150 cm over 75 m hillslope transects in Caribou-Poker Creeks Research Watershed, Alaska. This is an exploratory study to begin understanding SLA variation and controls thereof in a non-contiguous permafrost system.
DOI: 10.6073/pasta/0fa9c11ff19973c50de99ada61b3edd3
title: Caribou-Poker Creeks Research Watershed: Hourly Air Temperature (mean, min, max) from 1995 to Present

description: This dataset contains the hourly output from Temperature sensors for the Cariou-Poker Creeks Research Watershed (CPCRW). Any temperature data collected in this area is reported here. This includes Level 3 weather stations as well as smaller scale and temporal studies. This data can be sorted and viewed by site, year, hour, height of measurement, mean, min, and max value. Updates of each site are different since some are still on going while other had only a 2-3 year life cycle. This information can be found in the site descriptions and in the metadata.
DOI: 10.6073/pasta/7ebef609df2135fc249479afb5246bac
title: Caribou Poker Creek Research Watershed GIS Data: Digital Elevation Model (DEM)

description: This file contains one of many raster grids of the Elevation Derivatives for National Applications (EDNA), a multi-layered database that provides systematic and consistent topographically-derived hydrologic derivatives. The filled DEM grid was created from the original elevation data by filling all of the depressions, or sinks, in the original DEM. To create this grid, an algorithm was used to loacted and fill all depressions or sinks where there was no flow from pixel to pixel. During this process, efforts were made to maintain natural sink features. Originator: U.S. Geological Survey. Publication_Date: 2006. Title: cpcrw_dem.tif. Edition: Stage I Data. Geospatial_Data_Presentation_Form: Remote-sensing image. Series_Information: Series_Name: Elevation Derivatives for National Applications (EDNA). Publication_Information: Publication_Place: USGS EROS, Sioux Falls, South Dakota. Publisher: U.S. Geological Survey.