cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0932837.10fu
title: SH0932837.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0932838.10fu
title: SH0932838.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0932839.10fu
title: SH0932839.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0932840.10fu
title: SH0932840.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0932841.10fu
title: SH0932841.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0932842.10fu
title: SH0932842.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0932843.10fu
title: SH0932843.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0932844.10fu
title: SH0932844.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0932845.10fu
title: SH0932845.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.6hu76j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Trichoniscoides heroldi Vandel, 1952",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0099585-240626123714530/datasets/export for details.
DOI: 10.15156/bio/sh0932846.10fu
title: SH0932846.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.2640819
title: Replication Package for the Paper: "The Impact of Code Review on Architectural Changes"

description: This is a replication package for the paper "The Impact of Code Review on Architectural Changes", to be published at the IEEE Transactions on Software Engineering (TSE).

 

The TSE paper mentioned above is a journal extension of a previous conference paper published at the IEEE/ACM International Conference on Automated Software Engineering (ASE'17). Hence, this is also the replication package for our conference paper "Are Developers Aware of the Architectural Impact of Their Changes?"

 

The replication package is composed of:

 

1 - 103,778 structural architectures extracted from the source code of 7 open source software systems.

2 - Churn and size metrics for each of the extracted structural architectures.

3 - Values of structural cohesion and coupling computed for the significant architectural changes

4 - A manual classification of the changes' intent

 

The presented dataset can be used not only to replicate the TSE paper but also to perform new empirical studies involving software architecture, architectural changes, software changes, code review and software module clustering, to mention a few.
DOI: 10.5281/zenodo.2640820
title: Replication Package for the Paper: "The Impact of Code Review on Architectural Changes"

description: This is a replication package for the paper "The Impact of Code Review on Architectural Changes", to be published at the IEEE Transactions on Software Engineering (TSE).

 

The TSE paper mentioned above is a journal extension of a previous conference paper published at the IEEE/ACM International Conference on Automated Software Engineering (ASE'17). Hence, this is also the replication package for our conference paper "Are Developers Aware of the Architectural Impact of Their Changes?"

 

The replication package is composed of:

 

1 - 103,778 structural architectures extracted from the source code of 7 open source software systems.

2 - Churn and size metrics for each of the extracted structural architectures.

3 - Values of structural cohesion and coupling computed for the significant architectural changes

4 - A manual classification of the changes' intent

 

The presented dataset can be used not only to replicate the TSE paper but also to perform new empirical studies involving software architecture, architectural changes, software changes, code review and software module clustering, to mention a few.
DOI: 10.5519/qd.qv9xs0ns
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.17632/r2tz7yc79j.1
title: Data for: ‘What I Wish My Surgeon Knew’: a Novel Approach to Promote Empathic Curiosity in Surgery

description: The data contained within this dataset correspond to the the quantitative demographic data and qualitative interview transcript data for the manuscript, "'What I Wish My Surgeon Knew’: a Novel Approach to Promote Empathic Curiosity in Surgery," submitted to the Journal of Surgical Education for publication.
DOI: 10.14469/hpc/5479
title: Co(II)-Tetraphenylporphyrin, +1 triplet, flattened Ph S4 E= -3294.87050603 G=-3294.331114

description: Gaussian Calculation
DOI: 10.17632/3wy4vj4jdw.1
title: US Banks use of Credit Derivatives

description: US bank participation in credit derivatives. US banks’ holding of credit derivatives rapidly increased between 1997 and 2007 and started a steady decline after 2011. We used this trend to divide our analysis into three subperiods, pre-financial crisis, during crisis, and post financial crisis. We found that banks are more likely to participate in the credit derivatives market if they were larger, were more experienced in derivatives, held higher risk assets, and had less core capital than others. The results from a more detailed analysis of the three subperiods showed that the financial crisis represented a transitional period for US banks’ holdings of credit derivatives. The results indicate that US banks increased their hedging and increased their appetite for risk. The financial crisis also represented a structural change in type of loans held by participating US banks. The results show that US banks converged towards hedging around the financial crisis and away from speculation in credit derivatives. The increase hedging may allow US banks to increase their appetite for risky assets.
DOI: 10.17632/8v8nkcp5dj.1
title: Biometric measurements of the Late Ordovician Rhynchotrema-Hiscobeccus brachiopods from Laurentia

description: Nine biometric measurements of the Late Ordovician Rhynchotrema and Hiscobeccus specimens from Laurentia (North America) including: shell length (L), shell width (W), shell thickness (T), sulcus depth (T1), sulcus maximum width (W1), sulcus floor width (W2), Apical angle (AA), Lamella-covered shell length (L1), and Lamella number (Ln).
DOI: 10.17632/bwswrk9zsv.1
title: progressive collapse static and dynamic analysis results

description: push-down and nonlinear dynamic analysis results and resulted charts for all column removal scenarios of 3, 6 and 9 story structures were archived here. they are categorized by span length, seismic load level and column removal location.
DOI: 10.17632/8v8nkcp5dj.2
title: Biometric measurements of the Late Ordovician Rhynchotrema-Hiscobeccus brachiopods from Laurentia

description: Nine biometric measurements of the Late Ordovician Rhynchotrema and Hiscobeccus specimens from Laurentia (North America) including: shell length (L), shell width (W), shell thickness (T), sulcus depth (T1), sulcus maximum width (W1), sulcus floor width (W2), Apical angle (AA), Lamella-covered shell length (L1), and Lamella number (Ln).
DOI: 10.17632/8v8nkcp5dj.3
title: Biometric measurements of the Late Ordovician Rhynchotrema-Hiscobeccus brachiopods from Laurentia

description: Nine biometric measurements of the Late Ordovician Rhynchotrema and Hiscobeccus specimens from Laurentia (North America) including: shell length (L), shell width (W), shell thickness (T), sulcus depth (T1), sulcus maximum width (W1), sulcus floor width (W2), Apical angle (AA), Lamella-covered shell length (L1), and Lamella number (Ln).
DOI: 10.17632/nwj5p2gv37.1
title: Experimental data on Single Pulsed Power Plasma Discharge Test for Fractures Initiation and Synchronized Diagnostics Using Electromagnetic Wave Method

description: The data of the researches describe experiments using 2kJ of stored energy achieved peak pressures of up 200 MPa (29,000 psi). These shockwave pressures were generated by typical plasma duration of 6-16.5 microseconds. Ionizable material aluminum was used as fusible link in the plasma discharge to introduce thermite ionic recombination reactions other than the original electrical pulse. Two groups of four cylindrical test samples were built under different conditions: water-to-cement ratio, wellbore size, and tubing perforations. Their purpose was to test the effect of the high-pressure shockwave over a range mimicking common rock properties and current completion methods. In all these experiments, the relevant electromagnetic fields were measured at some distance from the plasma. In both laboratory and near zone field applications where transient magnetic effects dominate, the techniques to measure dynamic magnetic fields are limited. Therefore flat induction search coils based on Faraday’s law were used to measure the time derivative of the magnetic fields generated. In order to compare with the experimentally measured data from the search coils the time derivatives of the simulated fields were calculated.
DOI: 10.17632/n3jfn7z9zb.1
title: Exploring the Relationship between Beach Boys and Tourists Using Hostguest Theory: The Case of Bentota, Sri Lanka

description: Beach boys in the informal tourism sector are often identified as sex workers whose behaviour affect the tourists’ experience either positively or negatively. The relationships developed between the beach boys and the tourists constitute important phenomenon in tourism host-guest theory. The aim of this study was to identify the type of relationship exists in between beach boys and tourists in Sri Lanka. The sample consisted of eleven beach boys in Bentota National Holiday resort, whose interviews were recorded, transcribed and analysed through qualitative content analysis method using NVivo 11 tool. The findings of the content analysis are uploaded in to the data set as tables. The results indicate that the beach boys make diverse attempts to initiate relationships with the tourists by being sales persons, guides, companions and sex partners while some beach boys eventually become the life partners of the foreign female tourists extending the horizons of host-guest theory.
DOI: 10.17632/v5th44n68j.1
title: Site-specific microarray evaluation of spontaneous dermatitis in flaky tail mice

description: Flaky tail mice (FTM) are known to spontaneously develop atopic dermatitis-like dermatitis with age. Interestingly, we have already reported that the spontaneous development of dermatitis exhibits site-specificity, e.g., the face, ears, and neck of old FTM develop severe dermatitis spontaneously, whereas the dorsal flank skin remains normal. The detailed mechanisms of site-specific emergence of dermatitis remain unclear. Here, we analyzed non-lesional and lesional skin in FTM using a microarray to focus the pathogenesis of site-specific dermatitis. This gene analysis showed that abnormal lipid metabolism including peroxisome proliferator-activated receptor signaling might be deeply involved in the site-specific emergence or maintenance of dermatitis on the necks of old FTM.
DOI: 10.17632/yfg6dh6ztb.1
title: Ethical Practice in Prison Setting

description: This data includes research and literature about the mental health care in prison setting.
DOI: 10.17632/yzs3xvttvk.1
title: The training data for BPN model

description: The training data for BPN model.
DOI: 10.5281/zenodo.2640688
title: Dataset - Enhanced flux prediction by integrating relative expression and relative metabolite abundance into thermodynamically consistent metabolic models

description: <strong>Simulation data needed to reproduce the results from the manuscript “Enhanced flux prediction by integrating relative expression and relative metabolite abundance into thermodynamically consistent metabolic models”</strong><br>
by V. Pandey, N. Hadadi and V. Hatzimanikatis

"REMI manuscript - simData" folder contains all simulation data which can be used to generate results of the paper:  <br>
• Expression_data: This folder contains Transcriptomics data from both studies: Ishii et al (see test_expr.mat) and Holm et al.<br>
• Fluxdata: Fluxomics data can be found form the studies Ishii et al and Holm et al.<br>
• Metabolomics: This contains metabolomics data of aforementioned both studies.<br>
• ModelsSolutions: We generated different models using with thermodynamics (TGex, TGexM, TM) and without thermodynamics models (Gex, GexM, M). Gex indicates integration with only gene expression, GexM indicates gene expression and metabolite, and M indicates only metabolites. ‘T’ is used for thermodynamic models.  Models for different mutants and conditions (e.g. pgm, pgi) can be found in the corresponding folders (TGex, TGexM, TM, Gex, GexM, and M).  Variables with the ‘store’ tag comprises flux solutions, correlation values and percentage error between simulation and experiment fluxes.<br>
• AlternativeMCS: We generated alternative states for MCS and saved results.<br>
• FVAMM: This is the result flux variability analysis can be found in this folder.<br>
• Scatter_plot: Scatter plots indicates correlation between measured and model predicted fluxes.
description: VP and VH are supported by the RTD grant MalarX, no. 2013/155,  within SystemsX.ch, the Swiss Initiative for Systems Biology evaluated by the Swiss National Science Foundation and by the École Polytechnique fédérale de Lausanne. NH is supported through the RTD grant MicroScapesX, no. 2013/158, within SystemX, the Swiss Initiative for System Biology evaluated by the Swiss National Science Foundation.