cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11357654.v1
title: Does government funding promote or inhibit the financialization of manufacturing enterprises? Evidence from listed Chinese enterprises

description: the financialization of manufacturing enterprises
DOI: 10.6084/m9.figshare.11357684.v3
title: Quantifying subsurface water movement and contributions in a headwater catchment An integrated isotope and numerical modeling approach.xlsx

description: Data associated with publication titled "Quantifying subsurface water movement and contributions in a headwater catchment: An integrated isotope and numerical modeling approach".
DOI: 10.6084/m9.figshare.11357684.v2
title: Quantifying subsurface water movement and contributions in a headwater catchment An integrated isotope and numerical modeling approach.xlsx

description: Data associated with publication titled "Quantifying subsurface water movement and contributions in a headwater catchment: An integrated isotope and numerical modeling approach".
DOI: 10.6084/m9.figshare.11357633
title: Supplementary Material for: Treatment Outcome of Auditory and Frontal Dual-Site rTMS in Tinnitus Patients and Changes in Magnetoencephalographic Functional Connectivity after rTMS: Double-Blind Randomized Controlled Trial

description: <b><i>Background:</i></b> Recently, the role of neural modulation in nonauditory cortices via repetitive transcranial magnetic stimulation (rTMS) for tinnitus control has been emphasized. It is now more compelling to consider these nonauditory cortices and the whole “tinnitus network” as targets for tinnitus treatment to achieve a better outcome. <b><i>Objective:</i></b> We aimed to investigate the effects of active dual-site rTMS treatment in tinnitus reduction using a double-blind randomized controlled trial. <b><i>Method:</i></b> In study 1, the dual-site rTMS treatment group (<i>n</i> = 17) was treated daily for 4 consecutive days. The sham group (<i>n</i> = 13) also visited the clinic for 4 days; they received sham treatment for the same duration as the dual-site rTMS treatment group. In study 2, the rTMS treatment protocol was exactly the same as in study 1. Magnetoencephalography recordings were performed before and 1 week after the last rTMS treatment. The outcome measure was the Tinnitus Handicap Inventory (THI) score and the visual analog scale score. The effects of treatment were assessed 1, 2, 4, and 8 weeks after rTMS treatment in study 1. Then the mean band power and network changes were compared between pre- and post-treatment values after rTMS in study 2. <b><i>Result:</i></b> Patients in the dual-site rTMS treatment group exhibited significantly improved THI scores at 2, 4, and 8 weeks after rTMS treatment compared with the pretreatment scores. However, the sham group did not show any significant reduction in THI scores. When the mean band power changes were compared between pre- and post-treatment assessments, an increased oscillation power was observed in the alpha band after rTMS. <b><i>Conclusion:</i></b> A beneficial effect of rTMS on tinnitus suppression was found in the dual-site active rTMS group, but not in the sham rTMS group.
DOI: 10.6084/m9.figshare.11357633.v1
title: Supplementary Material for: Treatment Outcome of Auditory and Frontal Dual-Site rTMS in Tinnitus Patients and Changes in Magnetoencephalographic Functional Connectivity after rTMS: Double-Blind Randomized Controlled Trial

description: <b><i>Background:</i></b> Recently, the role of neural modulation in nonauditory cortices via repetitive transcranial magnetic stimulation (rTMS) for tinnitus control has been emphasized. It is now more compelling to consider these nonauditory cortices and the whole “tinnitus network” as targets for tinnitus treatment to achieve a better outcome. <b><i>Objective:</i></b> We aimed to investigate the effects of active dual-site rTMS treatment in tinnitus reduction using a double-blind randomized controlled trial. <b><i>Method:</i></b> In study 1, the dual-site rTMS treatment group (<i>n</i> = 17) was treated daily for 4 consecutive days. The sham group (<i>n</i> = 13) also visited the clinic for 4 days; they received sham treatment for the same duration as the dual-site rTMS treatment group. In study 2, the rTMS treatment protocol was exactly the same as in study 1. Magnetoencephalography recordings were performed before and 1 week after the last rTMS treatment. The outcome measure was the Tinnitus Handicap Inventory (THI) score and the visual analog scale score. The effects of treatment were assessed 1, 2, 4, and 8 weeks after rTMS treatment in study 1. Then the mean band power and network changes were compared between pre- and post-treatment values after rTMS in study 2. <b><i>Result:</i></b> Patients in the dual-site rTMS treatment group exhibited significantly improved THI scores at 2, 4, and 8 weeks after rTMS treatment compared with the pretreatment scores. However, the sham group did not show any significant reduction in THI scores. When the mean band power changes were compared between pre- and post-treatment assessments, an increased oscillation power was observed in the alpha band after rTMS. <b><i>Conclusion:</i></b> A beneficial effect of rTMS on tinnitus suppression was found in the dual-site active rTMS group, but not in the sham rTMS group.
DOI: 10.6084/m9.figshare.11357330
title: person_rw.csv

description: <br>This is a test csv. All synthetic data adapted from SynPuf data
DOI: 10.6084/m9.figshare.11357330.v1
title: person_rw.csv

description: <br>This is a test csv
DOI: 10.6084/m9.figshare.11357279
title: Novel frameshift mutation in <i>NYX</i> gene in a Russian family with complete congenital stationary night blindness

description: <b>Background:</b> The complete form of X-linked congenital stationary night blindness (CSNB1A) is a very rare genetic disease caused by mutation in the NYX gene. CSNB1A-associated several mutations in the NYX gene have been reported earlier. <b>Methods:</b> In this case report, we have clinically diagnosed and genetically confirmed a novel mutation associated with CSNB1A in four members of a Russian family. Two male siblings from a family of four siblings (two girls, two boys) with non-progressive stable night blindness since early childhood and high myopia underwent - visual acuity test, perimetry, biomicroscopy, OCT, ophthalmoscopy, electroretinography, color vision Hue test, NGS based whole exome analysis and Sanger sequencing for clinical characterization and genetic confirmation of CSNB. <b>Results:</b> The members are clinically diagnosed and genetically confirmed with CSNB1A. All the patients had a novel frameshift mutation in the NYX gene (c.283delC, p.His95fs, NM_022567.2) that is found to segregate in X-linked manner <b>Conclusions:</b> This is probably the first case report with a novel mutation from Russia associated with CSNB1A.
DOI: 10.6084/m9.figshare.11357279.v1
title: Novel frameshift mutation in <i>NYX</i> gene in a Russian family with complete congenital stationary night blindness

description: <b>Background:</b> The complete form of X-linked congenital stationary night blindness (CSNB1A) is a very rare genetic disease caused by mutation in the NYX gene. CSNB1A-associated several mutations in the NYX gene have been reported earlier. <b>Methods:</b> In this case report, we have clinically diagnosed and genetically confirmed a novel mutation associated with CSNB1A in four members of a Russian family. Two male siblings from a family of four siblings (two girls, two boys) with non-progressive stable night blindness since early childhood and high myopia underwent - visual acuity test, perimetry, biomicroscopy, OCT, ophthalmoscopy, electroretinography, color vision Hue test, NGS based whole exome analysis and Sanger sequencing for clinical characterization and genetic confirmation of CSNB. <b>Results:</b> The members are clinically diagnosed and genetically confirmed with CSNB1A. All the patients had a novel frameshift mutation in the NYX gene (c.283delC, p.His95fs, NM_022567.2) that is found to segregate in X-linked manner <b>Conclusions:</b> This is probably the first case report with a novel mutation from Russia associated with CSNB1A.
DOI: 10.6084/m9.figshare.11357012
title: dataset.xlsx

description: results of a questionnaire survey
DOI: 10.26180/5df1db435a4a2
title: Data assimilation results

description: Results of the actual evapotranspiration data assimilation into a coupled unsaturated/groundwater model.<br><br>
DOI: 10.6084/m9.figshare.11356967
title: Permeability of uniaxially compressed freshwater ice

description: Summary of loading curves, elastic properties and permeabilities of crack networks created in uniaxially compressed freshwater ice<br>
DOI: 10.6084/m9.figshare.11356967.v2
title: Permeability of uniaxially compressed freshwater ice

description: Summary of loading curves, elastic properties and permeabilities of crack networks created in uniaxially compressed freshwater ice<br>
DOI: 10.6084/m9.figshare.11356952
title: Mechanisms underlying attraction to odors in walking Drosophila

description: This dataset goes with the manuscript <b>Mechanisms underlying attraction to odors in walking <i>Drosophila</i></b><b>. </b> <b> </b> Authors: Liangyu Tao<sup>1</sup>, Siddhi Ozarkar<sup>2</sup> &Vikas Bhandawat<sup>1,2</sup>*.<br>
DOI: 10.6084/m9.figshare.11356967.v1
title: Table_S1.xlsx

description: Summary of elastic properties and permeabilities of crack networks created in uniaxially compressed freshwater ice<br>
DOI: 10.6084/m9.figshare.11356952.v2
title: Mechanisms underlying attraction to odors in walking Drosophila

description: This dataset goes with the manuscript <b>Mechanisms underlying attraction to odors in walking <i>Drosophila</i></b><b>. </b> <b> </b> Authors: Liangyu Tao<sup>1</sup>, Siddhi Ozarkar<sup>2</sup> &Vikas Bhandawat<sup>1,2</sup>*.<br>
DOI: 10.6084/m9.figshare.11356952.v1
title: Mechanisms underlying attraction to odors in walking Drosophila

description: This dataset goes with the manuscript <b>Mechanisms underlying attraction to odors in walking <i>Drosophila</i></b><b>. </b> <b> </b> Authors: Liangyu Tao<sup>1</sup>, Siddhi Ozarkar<sup>2</sup> &Vikas Bhandawat<sup>1,2</sup>*.<br>
DOI: 10.6084/m9.figshare.11356895
title: Sequencing data

description: Sequencing data of transcriptome
DOI: 10.6084/m9.figshare.11356895.v1
title: Sequencing data

description: Sequencing data of transcriptome
DOI: 10.6084/m9.figshare.11356859
title: Codon usage pattern of all genes in Escherichia coli K-12

description: Since its elucidation, the codon table has played a pivotal role in aiding our understanding of how cells read the sequence in DNA and translate it into a protein sequence. But, at a fundamental level, we still do not understand why the codon table is degenerate such that different codons could encode the same amino acid. More intriguingly, different number of codons are used to encode different amino acids. These mysteries await resolution through fundamental research, but, at the applied level, codon usage patterns of cells have been known to impact on the efficiency in which a gene can be expressed. Specifically, genes with less often used codons could not be translated into proteins efficiently, thereby, resulting in a low expression level. This work took a different perspective in understanding the codon usage pattern of a cell. In particular, a global approach was taken to calculate the codon usage pattern of all genes in <i>Escherichia coli</i> K-12 using information from the reference genome of <i>E. coli</i> K-12 MG1655 (Genbank accession number: NCBI Reference Sequence: NC_000913.3) Through analysis with an in-house MATLAB software, the codon usage pattern of all genes revealed that codons, AGA and AGG, were minimally used by the bacterium. This holds implications at different levels. Both codons were part of 6 codons that could encode arginine, which suggests that some genes could not be efficiently translated into the corresponding proteins if they sport the minimally used codons. This meant that analysing the codon usage pattern of a cell at the genome level could help uncover genes that are no longer needed by the cell. Specifically, the logic flows that since a gene could not be expressed efficiently, it has likely lost physiological relevance and might be a relic of evolution. Hence, profiling the codon usage pattern of a cell could become a useful tool for determining putative genes that are no longer required by the cell. Overall, this work should lend insights into the preferred codon usage pattern of this biotechnology workhorse as well as serving as a first demonstration of an approach useful for uncovering genes that are no longer relevant in the cell’s current evolutionary trajectory. <br><br>
DOI: 10.6084/m9.figshare.11356838
title: The clinical perioperative data of patients performed laparoscopic distal pancreatectomy or laparoscopic spleen-preserving distal pancreatectomy with simulation by three-dimensional virtual endoscopy.

description: The clinical perioperative data of patients performed laparoscopic distal pancreatectomy or laparoscopic spleen-preserving distal pancreatectomy with simulation by three-dimensional virtual endoscopy.
DOI: 10.6084/m9.figshare.11356838.v1
title: Data.xlsx

description: The clinical perioperative data of patients performed laparoscopic distal pancreatectomy or laparoscopic spleen-preserving distal pancreatectomy with simulation by three-dimensional virtual endoscopy.
DOI: 10.6084/m9.figshare.11356661
title: Cell type embeddings, marker genes and 26-datasets

description: dataset
DOI: 10.6084/m9.figshare.11356661.v1
title: Cell type embeddings, marker genes and 26-datasets

description: dataset
DOI: 10.23641/asha.11356637
title: Hearing preservation with standard arrays (Dillon et al., 2019)

description: <b>Purpose: </b>The goal of this work was to evaluate the low-frequency hearing preservation of long electrode array cochlear implant (CI) recipients.<b>Method: </b>Twenty-five participants presented with an unaided hearing threshold of ≤ 80 dB HL at 125 Hz preoperatively in the ear to be implanted. Participants were implanted with a long (31.5-mm) electrode array. The unaided hearing threshold at 125 Hz was compared between the preoperative and postoperative intervals (i.e., initial CI activation, and 1, 3, 6, 9, and 12 months after activation).<b>Results: </b>Eight participants maintained an unaided hearing threshold of ≤ 80 dB HL at 125 Hz postoperatively. The majority (<i>n</i> = 5) demonstrated aidable low-frequency hearing at initial activation, whereas 3 other participants experienced an improvement in unaided low-frequency hearing thresholds at subsequent intervals.<b>Conclusions:</b> CI recipients can retain residual hearing sensitivity with fully inserted long electrode arrays, and low-frequency hearing thresholds may improve during the postoperative period. Therefore, unaided hearing thresholds obtained within the initial weeks after surgery may not reflect later hearing sensitivity. Routine measurement of postoperative unaided hearing thresholds —even for patients who did not demonstrate aidable hearing thresholds initially after cochlear implantation—will identify CI recipients who may benefit from electric–acoustic stimulation.<br><b>Supplemental Material S1. </b>Unaided hearing thresholds at 125, 250, and 500 Hz measured at the pre-operative (labeled “PreOp”), initial activation (labeled “Act”), and 12-month intervals. Participants P10 and P11 are not plotted in Figure 1, as they did not demonstrate aidable thresholds (≤ 80 dB HL) in the post-operative period; however, their unaided hearing detection thresholds improved in the post-operative period. The remaining 14 participants had no response at all test intervals.<br>Dillon, M. T, Buss, E., O'Connell, B. P., Rooth, M. A., King, E. R., Bucker, A. L., Deres, E. J., McCarthy, S. A., Pillsbury, H. C., & Brown, K. D. (2019). Low-frequency hearing preservation with long electrode arrays: Inclusion of unaided hearing threshold assessment in the postoperative test battery. <i>American Journal of Audiology. </i>Advance online publication. https://doi.org/10.1044/2019_AJA-19-00045
DOI: 10.6084/m9.figshare.11356592
title: FACS cells used in the study

description: FACS cells of TMS
DOI: 10.23641/asha.11356637.v1
title: Hearing preservation with standard arrays (Dillon et al., 2019)

description: <b>Purpose: </b>The goal of this work was to evaluate the low-frequency hearing preservation of long electrode array cochlear implant (CI) recipients.<b>Method: </b>Twenty-five participants presented with an unaided hearing threshold of ≤ 80 dB HL at 125 Hz preoperatively in the ear to be implanted. Participants were implanted with a long (31.5-mm) electrode array. The unaided hearing threshold at 125 Hz was compared between the preoperative and postoperative intervals (i.e., initial CI activation, and 1, 3, 6, 9, and 12 months after activation).<b>Results: </b>Eight participants maintained an unaided hearing threshold of ≤ 80 dB HL at 125 Hz postoperatively. The majority (<i>n</i> = 5) demonstrated aidable low-frequency hearing at initial activation, whereas 3 other participants experienced an improvement in unaided low-frequency hearing thresholds at subsequent intervals.<b>Conclusions:</b> CI recipients can retain residual hearing sensitivity with fully inserted long electrode arrays, and low-frequency hearing thresholds may improve during the postoperative period. Therefore, unaided hearing thresholds obtained within the initial weeks after surgery may not reflect later hearing sensitivity. Routine measurement of postoperative unaided hearing thresholds —even for patients who did not demonstrate aidable hearing thresholds initially after cochlear implantation—will identify CI recipients who may benefit from electric–acoustic stimulation.<br><b>Supplemental Material S1. </b>Unaided hearing thresholds at 125, 250, and 500 Hz measured at the pre-operative (labeled “PreOp”), initial activation (labeled “Act”), and 12-month intervals. Participants P10 and P11 are not plotted in Figure 1, as they did not demonstrate aidable thresholds (≤ 80 dB HL) in the post-operative period; however, their unaided hearing detection thresholds improved in the post-operative period. The remaining 14 participants had no response at all test intervals.<br>Dillon, M. T, Buss, E., O'Connell, B. P., Rooth, M. A., King, E. R., Bucker, A. L., Deres, E. J., McCarthy, S. A., Pillsbury, H. C., & Brown, K. D. (2019). Low-frequency hearing preservation with long electrode arrays: Inclusion of unaided hearing threshold assessment in the postoperative test battery. <i>American Journal of Audiology. </i>Advance online publication. https://doi.org/10.1044/2019_AJA-19-00045
DOI: 10.6084/m9.figshare.11356559
title: References for Reed (2019) A novel comparative method for young sign languages

description: These are the references for:<br><b>Reed, Lauren W. (2019). A novel comparative method for young sign languages: Base comparison. Paper presented to Australian Linguistic Society annual meeting, Macquarie University, Sydney, 12 December. doi: </b><b>10.6084/m9.figshare.11356508</b>
DOI: 10.6084/m9.figshare.11356502
title: Protein clustering of huge phage

description: Dendrogram of protein clustering results in newick format.
DOI: 10.6084/m9.figshare.11356559.v1
title: References for Reed (2019) A novel comparative method for young sign languages

description: These are the references for:<br><b>Reed, Lauren W. (2019). A novel comparative method for young sign languages: Base comparison. Paper presented to Australian Linguistic Society annual meeting, Macquarie University, Sydney, 12 December. doi: </b><b>10.6084/m9.figshare.11356508</b>
DOI: 10.6084/m9.figshare.11356502.v1
title: Protein clustering of huge phage

description: Dendrogram of protein clustering results in newick format.
DOI: 10.23641/asha.11356487
title: Speech perception, acoustics, and children (Iglehart, 2019)

description: <b>Purpose: </b>The classroom acoustic standard ANSI/ASA S12.60-2010/Part 1 requires a reverberation time (RT) for children with hearing impairment of 0.3 s, shorter than its requirement of 0.6 s for children with typical hearing. While preliminary data from conference proceedings support this new RT requirement of 0.3 s, peer-reviewed data that support 0.3-s RT are not available on those wearing hearing aids. To help address this, this article compares speech perception performance by children with hearing aids in RTs, including those specified in the ANSI/ASA-2010 standard. A related clinical issue is whether assessments of speech perception conducted in near-anechoic sound booths, which may overestimate performance in reverberant classrooms, may now provide a more reliable estimate when the child is in a classroom with a short RT of 0.3 s. To address this, this study compared speech perception by children with hearing aids in a sound booth to listening in 0.3-s RT.<b>Method: </b>Participants listened in classroom RTs of 0.3, 0.6, and 0.9 s and in a near-anechoic sound booth. All conditions also included a 21-dB range of speech-to-noise ratios (SNRs) to further represent classroom listening environments. Performance measures using the Bamford–Kowal–Bench Speech-in-Noise (BKB-SIN) test were 50% correct word recognition across these acoustic conditions, with supplementary analyses of percent correct. <b>Results: </b>Each reduction in RT from 0.9 to 0.6 to 0.3 s significantly benefited the children’s perception of speech. Scores obtained in a sound booth were significantly better than those measured in 0.3-s RT.<b>Conclusion: </b>These results support the acoustic standard of 0.3-s RT for children with hearing impairment in learning spaces ≤ 283 m<sup>3</sup>, as specified in ANSI/ASA S12.60-2010/Part 1. Additionally, speech perception testing in a sound booth did not predict accurately listening ability in a classroom with 0.3-s RT.<br><b>Supplemental Material S1.</b> Reverberation times for each classroom condition.<br><b>Supplemental Material S2.</b> Speech perception scores (% correct) for each listening condition.<br>Iglehart, F. (2019). Speech perception in classroom acoustics by children with hearing loss and wearing hearing aids. American Journal of Audiology. Advance online publication. https://doi.org/10.1044/2019_AJA-19-0010
DOI: 10.25380/iastate.11356430
title: GIS data and juptyer Notebook for Random Forest models for soybean Sudden Death Syndrome (SDS)

description: GIS_data_and_jupyter_python_notebook.zip: Data for Modeling SDS via Random Forest Models. Contains a ArcGIS Pro project with example data collected at Marston Farm (Boone, IA) and cropped Planet scope 4-band imagery of the area for 2016, 2017 and 2018.Preview for jupyter notebook: preview of a jupyter (Python 3) notebook that demonstrates the use of Random forest classifier using the GIS data.<br>