cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/dx8-az6-j2c
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gdm-stx-y5p
title: Favosites sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pn5-a0b-80e
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yg5-80y-732
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hkm-1cl-vhg
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yke-h4q-l34
title: Fluorite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qma-1xv-v1g
title: Favosites sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0qs-laf-ezr
title: Graptolithina Bronn, 1849

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/s9g-3k5-kqt
title: †Eoplectodonta Kozlowski, 1929

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/941-1b3-751
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/v8m-z9w-d13
title: Graptolithina Bronn, 1849

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/a39-vx8-kd3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/eq4-t4v-k71
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8f1-ay3-3tw
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dr8-yy0-3th
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/56l-7jw-axe
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wt2-tm4-5kq
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fh3-82g-drm
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/h7d-yjc-k79
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/43c-0ff-m47
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/k9p-z81-brw
title: †Oepikina Salmon, 1942

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1cs-4pr-e9v
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dma-7yd-ahv
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/b3m-y30-je7
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jyv-1lm-0nt
title: †Oepikina Salmon, 1942

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cd1-pk9-75b
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/x4z-059-bzf
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6mm-gr0-lzq
title: †Asaphidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y3p-lcm-lyj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5gf-k0h-gz4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dlm-133-f7y
title: †Dalmanella Hall & Clarke, 1892

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5yz-rs2-w1z
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/66t-hrm-vab
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ndk-kr6-30a
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qvw-wnq-ged
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/04d-f66-z9y
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/v09-l4m-4dp
title: Lingula Bruguière, 1791

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3fz-xnc-35n
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qtt-ntg-x39
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ccy-tss-d5f
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qp5-9xf-py0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/85t-545-xt7
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kd7-xrq-g2x
title: †Siphonotreta Verneuil, 1845

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/as7-sg9-75h
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z72-y42-1jm
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bkv-89j-csg
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ex4-g6h-kyg
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1qh-rpw-bq6
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bw5-g55-tq8
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/513-0c3-l3e
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y33-9kz-4fc
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bsc-8eb-89t
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zgq-nje-ewg
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3rg-y5e-nl3
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6jv-0dh-5cv
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nb2-4jy-h8h
title: †Dianulites petropolitanus Dybowski, 1877 ()

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tw2-r3d-tnm
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/97l-p9r-fq6
title: Ceraurus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9na-e4l-dga
title: Streptelasma sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1bv-0zl-wp3
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vkd-aqf-zpw
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ksd-qla-lxc
title: †Murchisonia d'Archiac & Verneuil, 1841

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zhc-pfk-lff
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sra-t9e-kw2
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zke-9pn-z7n
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/j6a-b5j-f9b
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ngm-68g-0mp
title: Ceraurus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n5g-m8r-wma
title: Ceraurus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yax-2gz-3wh
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4kt-l28-qye
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/smz-cb2-gqh
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bej-y3x-jwg
title: †Chasmops odini Eichwald, 1860

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lls-3h1-l0x
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wtr-n3z-fse
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fz2-4z3-6gh
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nd5-qtg-r0x
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5ts-y64-c3s
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8k1-k2q-b33
title: Cyclocrinites C.E.I. von Eichwald, 1840

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/40l-nq0-fl4
title: †Murchisonia d'Archiac & Verneuil, 1841

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rp0-gwd-s42
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3yv-fl8-qng
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z4q-57q-3s9
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/p12-ltc-k9w
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qzb-vfy-whc
title: †Strophomena Blainville, 1824

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1lq-530-gb3
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hbp-ktz-fve
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5v2-b1s-b8a
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.15115760
title: OpenFE 2024 Industry Benchmarking Project (public datasets: FAAH, BACE-ciordia-prospective and BACE-P3-Arg-in), Results from Nupur Bansal from Biogen Inc.

description: OpenFE-1.01

OpenFE 2024 Industry Benchmarking Project, Results from systems FAAH, BACE-ciordia-prospective and BACE-P3-Arg-in datasets
DOI: 10.5281/zenodo.15115761
title: OpenFE 2024 Industry Benchmarking Project (public datasets: FAAH, BACE-ciordia-prospective and BACE-P3-Arg-in), Results from Nupur Bansal from Biogen Inc.

description: OpenFE-1.01

OpenFE 2024 Industry Benchmarking Project, Results from systems FAAH, BACE-ciordia-prospective and BACE-P3-Arg-in datasets
DOI: 10.3535/5dw-e6s-jf2
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ryy-zw4-pc0
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5zs-0p9-n03
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/raa-3ht-5n9
title: Lichas

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8r5-fh2-rhk
title: †Oepikina Salmon, 1942

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kal-7f6-4ag
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.10694912
title: ENCODE LR-RNA-seq models and expression values

description: In this object are the following files:

 



filt_ab_tpm_mouse.tsv / filt_ab_tpm_human.tsv: Expression levels in TPM for each transcript in human and mouse

lr_mouse_library_data_summary.tsv / lr_human_library_data_summary.tsv: Metadata for each dataset in human and mouse

cerberus.gtf / mouse_cerberus.gtf: Transcript models in GTF format
DOI: 10.5281/zenodo.10792577
title: ENCODE LR-RNA-seq models and expression values

description: In this object are the following files:

 



filt_ab_tpm_mouse.tsv / filt_ab_tpm_human.tsv: Expression levels in TPM for each transcript in human and mouse

lr_mouse_library_data_summary.tsv / lr_human_library_data_summary.tsv: Metadata for each dataset in human and mouse

cerberus.gtf / mouse_cerberus.gtf: Transcript models in GTF format

human_protein_summary.tsv / mouse_protein_summary.tsv: Summary of protein coding predictions, including ORF locations and NMD status
DOI: 10.5281/zenodo.10869841
title: ENCODE LR-RNA-seq models and expression values

description: In this object are the following files:

 



filt_ab_tpm_mouse.tsv / filt_ab_tpm_human.tsv: Expression levels in TPM for each transcript in human and mouse

lr_mouse_library_data_summary.tsv / lr_human_library_data_summary.tsv: Metadata for each dataset in human and mouse

cerberus.gtf / mouse_cerberus.gtf: Transcript models in GTF format

human_protein_summary.tsv / mouse_protein_summary.tsv: Summary of protein coding predictions, including ORF locations and NMD status
DOI: 10.5281/zenodo.15065370
title: ENCODE LR-RNA-seq models and expression values

description: In this object are the following files:

 



filt_ab_tpm_mouse.tsv / filt_ab_tpm_human.tsv: Expression levels in TPM for each transcript in human and mouse

lr_mouse_library_data_summary.tsv / lr_human_library_data_summary.tsv: Metadata for each dataset in human and mouse

cerberus.gtf / mouse_cerberus.gtf: Transcript models in GTF format

human_ucsc_transcripts.gtf / mouse_ucsc_transcripts.gtf: Transcript models for transcripts that passed expression filtering (>= 1 TPM in at least one library; transcripts from known 

human_protein_summary.tsv / mouse_protein_summary.tsv: Summary of protein coding predictions, including ORF locations and NMD status
DOI: 10.5281/zenodo.15065636
title: ENCODE LR-RNA-seq models and expression values

description: In this object are the following files:

 



filt_ab_tpm_mouse.tsv / filt_ab_tpm_human.tsv: Expression levels in TPM for each transcript in human and mouse

lr_mouse_library_data_summary.tsv / lr_human_library_data_summary.tsv: Metadata for each dataset in human and mouse

cerberus.gtf / mouse_cerberus.gtf: Transcript models in GTF format

human_ucsc_transcripts.gtf / mouse_ucsc_transcripts.gtf: Transcript models for transcripts that passed expression filtering (>= 1 TPM in at least one library; transcripts from known 

human_protein_summary.tsv / mouse_protein_summary.tsv: Summary of protein coding predictions, including ORF locations and NMD status
DOI: 10.5281/zenodo.15111981
title: Fire-footed rope squirrels (Funisciurus pyrropus) are a reservoir host of monkeypox virus (Orthopoxvirus monkeypox)

description: This dataset contains raw data generated from necropsy and faecal samples used in this study. This includes raw sequencing data from (i) MPXV hybridization capture experiments (n=5), (ii) a fire-footed rope squirrel mitogenome hybridization capture experiment, and (iii) mammal metabarcoding experiments performed on sooty mangabey fecal DNA extracts (n=78). We also provide consensus sequences of the MPXV genomes derived from the fire-footed rope squirrel and mangabeys, and of the fire-footed rope squirrel mitogenome. A spreadsheet provides the information linking individual samples to sequencing files as well as tag information necessary to demultiplex the data from the metabarcoding experiments.
DOI: 10.5281/zenodo.15111982
title: Fire-footed rope squirrels (Funisciurus pyrropus) are a reservoir host of monkeypox virus (Orthopoxvirus monkeypox)

description: This dataset contains raw data generated from necropsy and faecal samples used in this study. This includes raw sequencing data from (i) MPXV hybridization capture experiments (n=5), (ii) a fire-footed rope squirrel mitogenome hybridization capture experiment, and (iii) mammal metabarcoding experiments performed on sooty mangabey fecal DNA extracts (n=78). We also provide consensus sequences of the MPXV genomes derived from the fire-footed rope squirrel and mangabeys, and of the fire-footed rope squirrel mitogenome. A spreadsheet provides the information linking individual samples to sequencing files as well as tag information necessary to demultiplex the data from the metabarcoding experiments.
DOI: 10.5281/zenodo.15116042
title: ENCODE LR-RNA-seq models and expression values

description: In this object are the following files:

 



filt_ab_tpm_mouse.tsv / filt_ab_tpm_human.tsv: Expression levels in TPM for each transcript in human and mouse

lr_mouse_library_data_summary.tsv / lr_human_library_data_summary.tsv: Metadata for each dataset in human and mouse

cerberus.gtf / mouse_cerberus.gtf: Transcript models in GTF format

human_ucsc_transcripts.gtf / mouse_ucsc_transcripts.gtf: Transcript models for transcripts that passed expression filtering (>= 1 TPM in at least one library; transcripts from known 

human_protein_summary.tsv / mouse_protein_summary.tsv: Summary of protein coding predictions, including ORF locations and NMD status
DOI: 10.3535/n23-aat-q3c
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ss3-ff3-a0n
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.10363068
title: A collection of draft gene regulatory networks and perturbation transcriptomics data

description: These are collections of previously published gene regulatory networks and perturbation transcriptomics data analyzed in our manuscript "A systematic comparison of computational methods for expression forecasting". For more information and related code, see https://github.com/ekernf01/perturbation_benchmarking .
DOI: 10.5281/zenodo.10436339
title: A collection of draft gene regulatory networks and perturbation transcriptomics data

description: These are collections of previously published gene regulatory networks and perturbation transcriptomics data analyzed in our manuscript "A systematic comparison of computational methods for expression forecasting". For more information and related code, see https://github.com/ekernf01/perturbation_benchmarking .
DOI: 10.5281/zenodo.13255724
title: A collection of draft gene regulatory networks and perturbation transcriptomics data

description: These are collections of previously published gene regulatory networks and perturbation transcriptomics data analyzed in our manuscript "A systematic comparison of computational methods for expression forecasting". For more information and related code, see https://github.com/ekernf01/perturbation_benchmarking .
DOI: 10.5281/zenodo.13345104
title: A collection of draft gene regulatory networks and perturbation transcriptomics data

description: These are collections of previously published gene regulatory networks and perturbation transcriptomics data analyzed in our manuscript "A systematic comparison of computational methods for expression forecasting". For more information and related code, see https://github.com/ekernf01/perturbation_benchmarking .
DOI: 10.5281/zenodo.13785280
title: A collection of draft gene regulatory networks and perturbation transcriptomics data

description: These are collections of previously published gene regulatory networks and perturbation transcriptomics data analyzed in our manuscript "A systematic comparison of computational methods for expression forecasting". For more information and related code, see https://github.com/ekernf01/perturbation_benchmarking .
DOI: 10.5281/zenodo.13785607
title: A collection of draft gene regulatory networks and perturbation transcriptomics data

description: These are collections of previously published gene regulatory networks and perturbation transcriptomics data analyzed in our manuscript "A systematic comparison of computational methods for expression forecasting". For more information and related code, see https://github.com/ekernf01/perturbation_benchmarking .
DOI: 10.5281/zenodo.15048156
title: A collection of draft gene regulatory networks and perturbation transcriptomics data

description: These are collections of previously published gene regulatory networks and perturbation transcriptomics data analyzed in our manuscript "A systematic comparison of computational methods for expression forecasting". For more information and related code, see https://github.com/ekernf01/perturbation_benchmarking .