cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/sd5k5fct6z
title: Roseocin, a Novel Two-Component Lantibiotic from an Actinomycete. Mangal et al

description: Lantibiotics are lanthionine ring containing natural products that belong to the class of ribosomally synthesized and post-translationally modified peptides (RiPPs). Recent expansion in the availability of microbial genome data and in silico analysis tools, have accelerated the discovery of these promising alternatives to antibiotics. Following the genome-mining approach, a biosynthetic gene cluster for a putative two-component lantibiotic, roseocin, was identified in the genome of an Actinomycete, Streptomyces roseosporus NRRL 11379. Post-translationally modified lanthipeptides of this cluster were obtained by heterologous expression of the genes in E. coli, and were in vitro reconstituted to their bioactive form by exploiting commercial proteases like endoproteinase GluC, and proteinase K. The two peptides displayed synergistic antimicrobial activity against Gram-positive bacteria including the WHO high priority pathogens, MRSA and VRE. Structural characterization confirmed the installation of four (methyl)lanthionine rings with an indispensable disulphide bond in the α-peptide, and six (methyl)lanthionine rings in the β-peptide, by a single promiscuous lanthionine synthetase, RosM. Roseocin is the first two-component lantibiotic from a non-firmicute, with extensive lanthionine bridging.
DOI: 10.6084/m9.figshare.10013189.v1
title: all_labels.tsv

description: Labels for each concept used in the mechanistic inference process, for the framework available at:<br><code>https://github.com/ignaciot/MechSpy</code><br>
DOI: 10.6084/m9.figshare.22707483.v1
title: Supplementary File 7 from Genetics of behavioural evolution in giant mice from Gough Island

description: ImageJ script to track calibration video for the open field test
DOI: 10.6084/m9.figshare.6962465.v3
title: Neuroticism related differences in working memory task.sav

description: These file includes data related to performance of high and low neurotic participants on working memory tasks. we used the Cambridge Neuropsychological Tasks Automated Battery (CANTAB) as our test tool and we selected three working memory tasks which tested the effect of neuroticism on both in the central executive system (CES) and the WM storage system (i.e. visuospatial sketchpad) in 21 low and 24 high neurotics.
DOI: 10.6084/m9.figshare.8832113.v1
title: Table S2 Specifications of all instruments and manufacturer data..docx

description: All instruments were calibrated by the manufacturers prior to the experimental sessions, and instrument accuracy and specification are listed in the supplementary materials section.
DOI: 10.17632/sbc2t6tvpv
title: Improving the efficiency of FP-LAPW calculations

description: Abstract The full-potential linearized augmented-plane wave (FP-LAPW) method is well known to enable most accurate calculations of the electronic structure and magnetic properties of crystals and surfaces. The implementation of atomic forces has greatly increased its applicability, but it is still generally believed that FP-LAPW calculations require substantial higher computational effort compared to the pseudopotential plane wave (PPW) based methods. In the present paper we analyze ... Title of program: wien-speedup Catalogue Id: ABRE_v2_0 [ADLP] Nature of problem For ab-initio studies of the electronic and magnetic properties of poly-atomic systems, such as molecules, crystals and surfaces. Versions of this program held in the CPC repository in Mendeley Data ABRE_v1_0; WIEN; 10.1016/0010-4655(90)90187-6 ABRE_v2_0; wien-speedup; 10.1016/S0010-4655(99)00495-6 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/d24yyp96dc
title: Quantity of Questing Blacklegged Ticks and Micro-scale Environmental Factors in Four Suburban Parks near New York City

description: During 2017 and 2018, we collected the quantity of questing blacklegged ticks (Ixodes scapularis), also known as deer ticks, in 128 sampling sites of 5m by 5m in four state parks—Caumsett State Park, Connetquot River State Park, Rockefeller Park Preserve, and Fire Island National Seashore—around New York City. The blacklegged tick is the primary vector for the spirochete Borrelia burgdorferi, the pathogen of Lyme disease, in Northeastern United States. Using the flagging method, we collected and counted the numbers of adult and nymphal blacklegged ticks at each stie. Along with these quantities, we also recorded the geographic coordinates, ambient temperature, and relative humidity at the sampling sites. Using high-resolution aerial imagery and LiDAR data, we further derived land cover composition, ecotone boundary length, normalized difference vegetation index (NDVI), elevation, solar radiation, and other environmental factors. The data could be used to conduct longitudinal analysis at the same sampling sites as well as comparison with other sites. Ecologists and environmental scientists can use the data for spatiotemporal and statistical analyses of tick ecology at the local scale.
DOI: 10.6084/m9.figshare.17156195.v1
title: Growth Curve Data.csv

description: CeligoS plate reader counted HL-60 cells each day to monitor differentiation after adding PMA to cell culture media.<br>
DOI: 10.6084/m9.figshare.3555426.v1
title: Appendix C. Complementary analyses of lagged effects.

description: Complementary analyses of lagged effects.
DOI: 10.15468/dl.d4a8e2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina silus (Ascanius, 1775)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((26.9648 1.8496,17.9648 1.8496,17.9648 -7.1504,26.9648 -7.1504,26.9648 1.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013277-250525065834625/datasets/export for details.
DOI: 10.17632/2hf4kn49fn
title: Replication file for: "The Fiscal Multiplier in Presence of Unconventional Monetary Policy: Evidence for 17 OECD countries"

description: Data, code, figures and tables for article: "The Fiscal Multiplier in Presence of Unconventional Monetary Policy: Evidence for 17 OECD countries"
DOI: 10.17632/6h6rhwfkpy
title: A multi-format open-source historic wall image dataset for architects, historians, data scientists to detect, classify, and analyze.

description: The historical place dataset presents a collection of images of different features gathered from Panam City, a United Nations Educational, Scientific, and Cultural Organization (UNESCO) World Heritage Site situated in Sonargoan, Dhaka, Bangladesh, located at the geographical coordinates 23.6421599°N and 90.6023361°E. The data collection period, from October 6 to October 7, 2023, resulted in a dataset encompassing a total of 2,292 images. The dataset is categorized into five classes: Artistic, Corroded Brick, Corroded Plastic, Fungus, and Living Plant. The data collection process was conducted on a sunny day, ensuring natural lighting conditions, with temperatures ranging from approximately between 26-28°C. The images were captured using the high-resolution camera of an iPhone. The original images were captured in JPEG format with a resolution of 3024 x 4032 pixels and subsequently converted to a resolution of 1080 x 1440. The iPhone 13 was employed for capturing the dataset's photographs. Furthermore, the images have been annotated based on their features, facilitating semantic segmentation, which has garnered considerable attention among data scientists.
DOI: 10.6084/m9.figshare.1159338.v4
title: Effects of Neutering in German Shepherd Dogs

description: Datasets used to study the effects of neutering (including spaying) in increasing the incidence of joint disorders and cancers in German Shepherd Dogs. Veterinary hospital records from the University of California, Davis were examined over a 14.5-year period for the effects of neutering during the specified age ranges: before 6 mo., and during 6-11 mo., during 1 year and in years 2 through 8. The diseases examined were hip dysplasia, CCL tear, elbow dysplasia, lymphosarcoma, mast cell tumor, hemangiosarcoma, osteosarcoma, mammary cancer, pyometra, urinary incontinence, and degenerative myelopathy.
DOI: 10.6084/m9.figshare.25303204.v2
title: Dataset. FASTA file containing filtered and clustered NLR baits

description: The file <code>baits-moderatre-RM25pc-noPT.fas.clust-83-100</code> contains filtered baits that have been clustered after applying moderate filtering criteria, ensuring they have ≤25% repeat masking and exclude matches to plastid genomes. These baits were further collapsed by removing sequences that were 100% identical over 83% of their length. The resulting file contains a reduced set of 38,694 baits, effectively capturing the targeted regions while minimizing redundancy.
DOI: 10.6084/m9.figshare.29114807.v1
title: Leaf pigment content examined with Leaf State Analyser (Walz) in Homogyne alpina, Soldanella alpina and Vaccinium myrtillus

description: Measurements recorded with the Leaf State Analyser (Waltz) device, used to estimate apparent content of flavonols and anthocyanins in adaxial epidermis and total leaf chlorophyll content measured in June or July for Vaccinium myrtillus, Soldanella carpatica, and Homogyne alpina. Measurements were formed at the understorey (Jaworzynka Valley, 1080 m asl, 1125 m asl), clearing (Jaworzynka Valley, 1080 m asl, 1125 m asl), subalpine (Hala Gasienicowa, 1615 m asl), and peak alpine sites (Liliowe Pass, (1970 m asl) in the Tatra Mountains, Poland.
DOI: 10.6084/m9.figshare.928249.v1
title: Wild Planet Spy Video TRAKR Software and Documentation Archive

description: Wild Planet's Spy Video TRAKR archive. As of the creation of this text file, these are the only Spy Video Trakr programming documentation that is left on the Wild planet webiste http://dev.spygear.net/help/files/ yet there are still TRAKR owners who are interested in programming their TRAKRs and I have archived the documentation here for them to use (in case the above URL goes dark).
DOI: 10.6084/m9.figshare.13011470.v2
title: Multi-angle SIF of winter wheat and summer maize

description: The data is at 1-minute scale, and the head of each volume is listed below<br> day gpp Time SIF SolarZenith SolarAzimuth ViewZenith ViewAzimuth
DOI: 10.6084/m9.figshare.13573871.v1
title: DefaultData and PPDaiData

description: DefaultData dataset is obtained from the UCI machine learning library (Asuncion & Newman, 2007). PPDai dataset is obtained from customer data from a Chinese P2P lending platform named PaiPaiDai .A brief description of these datasets is shown in Table 1. DefaultData dataset contains 30000 instances including 23364 non-default instances and 6636 default instances. Each instance contains 24 features (15 numeric features and 9 categorical features). PPDai dataset contains 55596 instances including 48413 non-default instances and 7183 default instances. Each instance contains 29 features (22 numeric features and 7 categorical features).
DOI: 10.6084/m9.figshare.25436605.v1
title: A dataset assessing the growth and physiological response of narrowly and widely distributed <i>Eucalyptus </i>species to climate warming

description: A greenhouse warming experiment contrasting the growth response of narrowly and widely distributed Eucalyptus species from temperate and tropical Australia to a warming experiment. Data include metrics of size (e.g., height, diameter, harvested biomass), photosynthesis (carbon dioxide response curves and light saturated rates), respiration rates, and environmental observations (e.g., temperature, humidity).<br>
DOI: 10.6084/m9.figshare.28513604.v1
title: Supplementary Material for: THE RELATIONSHIP BETWEEN SURGICAL PROCEDURES AND ANGIOEDEMA ATTACKS IN HEREDITARY ANGIOEDEMA

description: Introduction: Surgical interventions can trigger angioedema attacks in hereditary angioedema (HAE). The aim of this study was to assess the incidence of perioperative angioedema and identify associated risk factors.
Methods: This retrospective study included HAE patients diagnosed between 1999 and 2024 at a tertiary adult allergy clinic. Data on surgical procedures and perioperative angioedema were analyzed.
Results: Of 102 HAE patients, 28 were excluded due to incomplete data, leaving 74 patients (46 female, 62.2%). Fifty-three patients underwent 94 surgeries, with the most common being gynecological (27, 28.7%), abdominal (27, 28.7%), and otorhinolaryngological (16, 17.0%). Of 54 surgeries before HAE diagnosis, 23 (42.5%) were abdominal. Among 27 abdominal surgeries, 17 (62.9%) occurred in patients with gastrointestinal angioedema prior to diagnosis. Of 40 surgeries after diagnosis, 31 (77.5%) received preoperative short term prophylaxis (STP), mostly plasma-derived C1 esterase inhibitor concentrate (27, 87.1%). Perioperative angioedema occurred in 28 (29.8%) surgeries, with a median recovery of 48 hours. In surgeries after diagnosis, attacks occurred in 7 out of 31 surgeries (22.6%) with STP and 2 out of 9 (22.2%) without. Among gynecological surgeries, 22 cesarean sections were performed. No significant difference in attack frequency was found between cesarean sections with STP (3, 27.3%) and without (2, 18.2%, p=0.611).
Conclusion: Our study found that abdominal attacks before HAE diagnosis are consistent with literature, underscoring their importance for early diagnosis. The angioedema rate was similar with or without STP before cesarean section, suggesting STP may not be necessary. Further research is needed to optimize HAE management in surgery.
DOI: 10.6084/m9.figshare.29026130.v1
title: Schi.RepeatProteinMask.gff

description: Repeat sequence annotation generated by the RepeatProteinMask software
DOI: 10.6084/m9.figshare.5995519.v2
title: A Parallel Corpus of Thesis and Dissertations Abstracts

description: NOTE FOR WMT PARTICIPANTS:There is an easier version for MT available in Moses format (one sentence per line. The files start with moses_like.<br>If you use this dataset, please cite the following work:<pre>@inproceedings{soares2018parallel, title={A Parallel Corpus of Theses and Dissertations Abstracts}, author={Soares, Felipe and Yamashita, Gabrielli Harumi and Anzanello, Michel Jose}, booktitle={International Conference on Computational Processing of the Portuguese Language}, pages={345--352}, year={2018}, organization={Springer} }</pre><pre><br></pre><br>In Brazil, the governmental body responsible for overseeing and coordinating post-graduate pro-grams, CAPES, keeps records of all thesis and dissertations presented in the country. Informa-tion regarding such documents can be accessed online in the Thesis and Dissertations Catalog(TDC), which contains abstracts in Portuguese and English, and additional data regarding suchdocuments. Thus, this database can be a potential source of parallel corpora for the Portugueseand English languages. In this article, we present the development of a parallel corpus from TDC,which is made available by CAPES under the open data initiative. Approximately 240,000 doc-uments were collected and aligned using the Hunalign algorithm. We demontrate the capabilityof our developed corpus by training Statistical Machine Translation (SMT) and Neural MachineTranslation (NMT) models for both language directions, followed by a comparison with GoogleTranslator (GT). Our both translation models presented better BLEU scores than GT, with NMTsystem being the most accurate one. Sentence alignment was also manually evaluated, presentingan average of XX% correctly aligned sentences. Our parallel corpus is freely available in TMXformat, with complementary infomration regarding document metadata.
DOI: 10.17632/8hzvs8km5z
title: ElderAbuse

description: This folder contains the data and codes to reproduce tables and figures in our paper "Deputizing Financial Institutions to Fight Elder Abuse"
DOI: 10.17632/xdhxyk6yvh
title: Geochronological data of Paleozoic igneous and metamorphic rocks from the NE Tarim Craton and its adjacent regions

description: The datasets contain three supplemental tables (Table S1 to S3). Table S1 show the LA-ICP-MS zircon and monazite U-Pb data for the key samples of Korla area, NE Tarim Craton. Table S2 display the Biotite 40Ar/39Ar stepwise heating data of mylonitic granite from the Korla area, NE Tarim Craton. Table S3 show ages data of the Paleozoic igneous rocks from the NE Tarim, eastern STS and CTS domains.
DOI: 10.6084/m9.figshare.16607912.v6
title: Long–term High–resolution Gridded Rainfall Product for Bangladesh (BDGR)

description: <strong>Long–term High–resolution Gridded Rainfall Product for Bangladesh (BDGR)</strong> <br> Records of monthly high resolution (0.01°) rainfall, in mm, for Bangladesh from January 1901 to December 2018, are freely available in NetCDF format. The data records spatially, covering the land area of Bangladesh. The records will be updated frequently in the upcoming years when more observed records will be available. Temporal coverage of data may be extended in the future when recent observations are available. The BDGR product can be used for many applications at various temporal resolutions. <br> The methodology of developing this dataset is presented in <strong>https://doi.org/10.1038/s41597-022-01568-z.</strong> You can cite the article as: <strong> Dewan, A., Shahid, S., Bhuian, M.H. </strong><em><strong>et al.</strong></em><strong> Developing a high-resolution gridded rainfall product for Bangladesh during 1901–2018. </strong><em><strong>Sci Data</strong></em><strong> 9, 471 (2022). https://doi.org/10.1038/s41597-022-01568-z </strong> <br> You can cite this dataset as: <em><strong>Dewan, Ashraf; Shahid, Shamsuddin; Bhuian, Md. Hanif; Hossain, Shaikh M. Jobayed; Nashwan, Mohamed Salem; Chung, Eun-Sung; et al. (2021): Long–term high–resolution gridded rainfall product for Bangladesh. figshare. Dataset. https://doi.org/10.6084/m9.figshare.16607912 </strong></em>
DOI: 10.6084/m9.figshare.28730123.v1
title: For earth surface

description: Collection of numerical methods and experimental content, insights from debris flow experiments
DOI: 10.6084/m9.figshare.6602684.v1
title: Inoculation and cultivation protocol for Lactobacillus crispatus

description: Method used to inoculate and cultivate <i>Lactobacillus crispatus</i> strains.<br>Used in http://www.reblab.org/ongoing-experiments-log/carbohydrate-active-enzymes-in-lactobacillus-crispatus-a-possible-link-between-the-pullulanase-gene-and-growth-on-glycogen/
DOI: 10.17632/rbfzrc9ss7
title: Genetic control of local mutation rates

description: Code relating to manuscript: Caballero M. and Koren, A. "Genetic control of local mutation rates". (2025)

The code includes mutation rate bias and variability data, and the consensus LCL replication timing. Requests for further materials or data should be directed to the corresponding author.
DOI: 10.17632/w26x9yrbtm
title: MicroEye : A Low-Cost Online Tool Wear Monitoring System With Modular 3D-printed Components for Micro-Milling Application

description: Tool detachment during the machining process is often required by many image-based tool wear monitoring (TWM) systems. Tool detachment prevents online mode of the wear measurement, extends the machining time, and contributes to the measurement inaccuracy. Other alternatives of the image-based TWM systems have been developed with the image-acquisition device located statically near the tool position without requirement for the tool detachment. However, due to its proximity to the machining site, the image-acquisition device may experience obstruction from the workpiece chips and the splash of coolant fluid during the machining process, resulting non-optimal TWM. To overcome the two problems, this article presents MicroEye - an online image-based TWM system with modular 3D-printed components. MicroEye offers great flexibility in its operation through the use of an active 6-DOF (degree of freedom) robotics arm with a camera at the end-effector. MicroEye does not require tool detachment to perform tool wear monitoring and can be safely placed outside the machining area. MicroEye is the first open-sourced, 3D-printed components, and active dynamic-type TWM system for the application of micro-milling. MicroEye can be built at a low-cost (approximately US$ 872, including the camera). MicroEye is suitable for various micro-milling sites, from laboratory scale to middle-low workshop.
DOI: 10.6084/m9.figshare.24866910.v1
title: A novel collaborative electric location routing problem with battery-swapping stations considering range anxiety

description: This is the experimental data of the manuscript entitled “A novel collaborative electric location routing problem with battery-swapping stations considering range anxiety”.
DOI: 10.6084/m9.figshare.28936931.v4
title: Thematic and group-focused participatory budgets in Poland (2014–2024)

description: The database includes data on the implementations of thematic and group-focused participatory budgets introduced by Polish municipalities in the years 2014–2024. The dataset includes also some preliminary data for the first qurarter of the year 2025.
DOI: 10.6084/m9.figshare.3179941
title: Factors affecting the persistence of drug-induced reprogramming of the cancer methylome

description: Aberrant DNA methylation is a critical feature of cancer. Epigenetic therapy seeks to reverse these changes to restore normal gene expression. DNA demethylating agents, including 5-aza-2′-deoxycytidine (DAC), are currently used to treat certain leukemias, and can sensitize solid tumors to chemotherapy and immunotherapy. However, it has been difficult to pin the clinical efficacy of these agents to specific demethylation events, and the factors that contribute to the durability of response remain largely unknown. Here we examined the genome-wide kinetics of DAC-induced DNA demethylation and subsequent remethylation after drug withdrawal in breast cancer cells. We find that CpGs differ in both their susceptibility to demethylation and propensity for remethylation after drug removal. DAC-induced demethylation was most apparent at CpGs with higher initial methylation levels and further from CpG islands. Once demethylated, such sites exhibited varied remethylation potentials. The most rapidly remethylating CpGs regained &gt;75% of their starting methylation within a month of drug withdrawal. These sites had higher pretreatment methylation levels, were enriched in gene bodies, marked by H3K36me3, and tended to be methylated in normal breast cells. In contrast, a more resistant class of CpG sites failed to regain even 20% of their initial methylation after 3 months. These sites had lower pretreatment methylation levels, were within or near CpG islands, marked by H3K79me2 or H3K4me2/3, and were overrepresented in sites that become aberrantly hypermethylated in breast cancers. Thus, whereas DAC-induced demethylation affects both endogenous and aberrantly methylated sites, tumor-specific hypermethylation is more slowly regained, even as normal methylation promptly recovers. Taken together, these data suggest that the durability of DAC response is linked to its selective ability to stably reset at least a portion of the cancer methylome.