cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25402/fmb.20391105
title: SARS-CoV-2 Genomic Epidemiology: Data and Sequencing Infrastructure - Table S2

description: Background: Genomic surveillance of SARS-CoV-2 is critical in monitoring viral lineages. Available data
reveal a significant gap between low- and middle-income countries and the rest of the world. Methods:
The SARS-CoV-2 sequencing costs using the Oxford NanoporeMinION device and hardware prices for data
computation in Lebanon were estimated and compared with those in developed countries. SARS-CoV-2
genomes deposited on the Global Initiative on Sharing All Influenza Data per 1000 COVID-19 cases were
determined per country. Results: Sequencing costs in Lebanon were significantly higher compared with
those in developed countries. Low- and middle-income countries showed limited sequencing capabilities
linked to the lack of support, high prices, long delivery delays and limited availability of trained personnel.
Conclusion: The authors recommend the mobilization of funds to develop whole-genome sequencingbased
surveillance platforms and the implementation of genomic epidemiology to better identify and
track outbreaks, leading to appropriate and mindful interventions.
DOI: 10.25402/fmb.20391108
title: SARS-CoV-2 Genomic Epidemiology: Data and Sequencing Infrastructure - Table S1

description: Background: Genomic surveillance of SARS-CoV-2 is critical in monitoring viral lineages. Available data
reveal a significant gap between low- and middle-income countries and the rest of the world. Methods:
The SARS-CoV-2 sequencing costs using the Oxford NanoporeMinION device and hardware prices for data
computation in Lebanon were estimated and compared with those in developed countries. SARS-CoV-2
genomes deposited on the Global Initiative on Sharing All Influenza Data per 1000 COVID-19 cases were
determined per country. Results: Sequencing costs in Lebanon were significantly higher compared with
those in developed countries. Low- and middle-income countries showed limited sequencing capabilities
linked to the lack of support, high prices, long delivery delays and limited availability of trained personnel.
Conclusion: The authors recommend the mobilization of funds to develop whole-genome sequencingbased
surveillance platforms and the implementation of genomic epidemiology to better identify and
track outbreaks, leading to appropriate and mindful interventions.
DOI: 10.25549/examiner-c44-20107
title: Miss 1961 contest, 1961

description: 8 images. Miss 1961 contest, 6 September 1961. Barbara Schmidt -- 15 years (First); Marian Tams -- 17 years; Pat Hopper -- 14 years (Second); Sally Forbes -- 15 years; Shirlee Evans -- 16 years; Yvonne Balyeat -- 16 years (Third); Margie Baumgartner -- 18 years; Pat Halperin -- 16 years (Fourth); Helen Ford -- 14 years; Dorrie Jones -- 16 years.
DOI: 10.15468/dl.r5ub4k
title: Occurrence Download

description: A dataset containing 114 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudautomeris luteata Walker, 1865"
 ]
}

 The dataset includes 114 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018227-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25402/fmb.21130720
title: CRISPR-Cas system: diversity and regulation in Enterobacteriaceae supplementarydata

description: Insights into the arms race between bacteria and invading mobile genetic elements have revealed the
intricacies of the clustered regularly interspaced short palindromic repeats (CRISPR)-Cas system and the
counter-defenses of bacteriophages. Incredible spacer diversity but significant spacer conservation among
species/subspecies dictates the specificity of the CRISPR-Cas system. Researchers have exploited this
feature to type/subtype the bacterial strains, devise targeted antimicrobials and regulate gene expression.
This review focuses on the nuances of the CRISPR-Cas systems in Enterobacteriaceae that predominantly
harbor type I-E and I-F CRISPR systems. We discuss the systems’ regulation by the global regulators, H-NS,
LeuO, LRP, cAMP receptor protein and other regulators in response to environmental stress. We further
discuss the regulation of noncanonical functions like DNA repair pathways, biofilm formation, quorum
sensing and virulence by the CRISPR-Cas system. The review comprehends multiple facets of the CRISPR-Cas
system in Enterobacteriaceae including its diverse attributes, association with genetic features, regulation
and gene regulatory mechanisms.
DOI: 10.25549/examiner-c44-19847
title: Pacific Coast Club girls sports, 1949

description: 12 images. Pacific Coast Club girls sports, 7 July 1949. Pat Geary; Sharon Geary; Donna Decker; Marie Bell; Suzanne Marichal; Nancy Ridgeway; Donna Mozingo.
DOI: 10.34740/kaggle/dsv/8433001
title: Daily Public Opinion on Israel-Palestine War
DOI: 10.25549/examiner-c44-19809
title: El Segundo girls physical education, 1948

description: 12 images. El Segundo girls physical education, 9 November 1948. Joy Miller; Joan Bell; Joanne Engle; Marilyn Baker; Darlene Lareau; Ruth Douglas; Shirley Bruer; Rosalie Prosser; Betty Allison.; Caption slip reads: "Photographer: Jensen. Assignment: El Segundo girls physical education. 19-20, 50-51-52: Speed ball. Joy Miller, Joan Bell; Joanne Engle (kicking); Marilyn Baker; Darlene Lareau. Field Hockey: Ruth Douglas (Goalie); Shirley Bruce; Rosalie Prosser; Betty Allison. In back, L to R: Pat Tracy; Joanne Keith; Nancy Tuck".
DOI: 10.6084/m9.figshare.25838494
title: Data (Mp4 video) and Codes (Matlab scripts)

description: data Baltimore and codes Autoregression
DOI: 10.25549/examiner-c44-74190
title: Trailer show, 1956

description: 7 images. Trailer show, 31 January 1956. Barbara Huffman; Lori Hilton; Dottie Dayton; Lorri (cq) Ennis; Charles Murphy; Lou Bell.; Caption slip reads: "Photographer: Olmo. Date: 1956-01-31. Reporter: Coughlin. Assignment: Trailer show. 69/70: Dottie Dayton in modern kitchen of $13,500 trailer. At organ is Charles Murphy. 71/72: Lorri (cq) Ennis talks into tape recorder in luxury trailer as Lou Bell sits. This ia 'all-electric trailer' -- retractable TV, tape recorder, electrically-powered window shades. 73/74: Barbara Huffman, 21, in bathtub of trailer. She's an actress. 75: Lori Hilton, 23, singer opens oven door of built-in range."
DOI: 10.25549/examiner-c44-74239
title: Crime lab tests on Joseph Jepsen, 1956

description: 4 images. Crime lab tests on Joseph Jepsen, 2 February 1956. Ray Pinker (of Crime Lab); Joseph Jepsen (husband of murdered Barbara Jean).; Caption slip reads: "Photographer: Monteverde. Date: 1956-02-02. Assignment: Crime Lab makes tests of Jepson(?) murder husband. 104: Ray Pinker. 105: Joseph Jepsen. 106/107: Ray Pinker, of Crime Lab makes tests on Joseph Jepson(?)."
DOI: 10.25549/examiner-c44-74306
title: Baby test tube paternity case, 1956

description: 40 images. Baby test tube paternity case, 6 March 1956. Vernon Simpson; Attorney Theodore S. Flier; Mrs. Edith Mitchell; Doctor Manuel de J. Castillo; Robert H. Holstein.
DOI: 10.25549/examiner-c44-15395
title: Post Office picnic, 1951

description: 2 images. Post Office picnic, 12 August 1951. Jo Ann Cassin -- 20 years (princess); Elizabeth Smith -- 19 years ("Miss Letter Carier of '51"); William Blanc (President of LA Letter Carriers Association); Pat Thomason -- 17 years (princess).
DOI: 10.25549/examiner-c44-74324
title: Baby test tube paternity case, 1956

description: 40 images. Baby test tube paternity case, 6 March 1956. Vernon Simpson; Attorney Theodore S. Flier; Mrs. Edith Mitchell; Doctor Manuel de J. Castillo; Robert H. Holstein.
DOI: 10.25549/examiner-c44-74679
title: Guy murder trial, 1957

description: 3 images. Guy murder trial, 28 October 1957. Charles Lee Guy Junior -- 39 years; Charles Lee Guy the 3rd; Mrs. Nina Angus Miles (mother of murder defendant).; Caption slip reads: "Photographer: Gaze. Date: 1957-10-28. Reporter: Gaze. Assignment: Guy murder trial. #3-4: North Carolina prosecutor Charles Lee Guy Jr., 39, stands back of his son as the latter's trial on a murder charge opens in Santa Monica Superior Court. Charles Lee III is accused of the shotgun slaying of his mother's lover, Guy F. Roberts, 45, advertising executive, in a Santa Monica motel room last Aug. 15. #9-10: Charles Lee Guy III, 19. #52-53: Mrs. Nina Angus Miles, mother of murder defendant Charles Lee guy, III, who will be called b the district attorney's office as a witness against her son".
DOI: 10.25549/examiner-c44-74509
title: Dickson funeral (Edward A.), 1956

description: 2 images. Dickson funeral (Edward A.), 25 February 1956. Doctor S. Austin Jones; Perry T. Jones; Dean Vern O. Knudsen; Hugh Evans; Judge Frederick F. Houser.; Caption slip reads: "Photographer: Lapp. Date: 1956-02-25. Reporter: Petty. Assignment: Dickson funeral. 55, 56: casket being carried from Wilshire Methodist Church. Pall bearers, front to rear, left side; Dr. S. Austin Jones, Perry T. Jones, Dean Vern O. Knudsen; rt. side, M. Phillip Davis, Hugh Evans, Judge Frederick F. Houser".
DOI: 10.25402/fmb.21932085
title: 3-phenacylideneoxindoles as a new class of antifungal compounds against Paracoccidioides spp. Supplementary material

description: Aims: Considering the need to identify new compounds with antifungal action, the activity of five
3-phenacylideneoxindoles compounds was evaluated. Materials & methods: The compounds were
synthesized, and their antifungal activity was elucidated through minimum inhibitory concentration
tests and interaction assay with other antifungals. Potential targets of compounds were predicted in
silico. Results: 3-phenacylideneoxindoles compounds inhibited fungal growth with minimum inhibitory
concentration and minimum fungicidal concentration ranging from 3.05 to 12.26 μM. The compounds
demonstrated high selectivity index and presented a synergistic effect with itraconazole. In silico
prediction revealed the pentafunctional AROM polypeptide, enolase, superoxide dismutase, catalase
and kinases as proteins targets of the compound 4a. Conclusion: The results demonstrate that 3-
phenacylideneoxindoles is a potential new class of antifungal compounds for paracoccidioidomycosis
treatment.
DOI: 10.25402/fmb.21988676
title: In vitro susceptibility of nonfermenting Gram-negative rods tomeropenem–vaborbactam and delafloxacin Suppl. Table 2

description: Aim: Meropenem–vaborbactam and delafloxacin activities were not assessed against Achromobacter spp. (Achr), Burkholderia cepacia complex (Bcc) and Stenotrophomonas maltophilia (Smal). Methodology: A total of 106 Achr, 57 Bcc and 100 Smal were tested with gradient diffusion test of meropenem–vaborbactam, delafloxacin and comparators. Results: Meropenem–vaborbactam MIC50 were 4 μg/ml for Achr, 1 μg/ml for B. cepacia, 2 μg/ml for B. cenocepacia and B. multivorans, and 32 μg/ml for Smal. Delafloxacin MIC50 were 4 μg/ml for Achr, 0.25 μg/ml for B. cepacia and B. multivorans, 2 μg/ml for B. cenocepacia, and 0.5 μg/m for Smal. meropenem–vaborbactam MICs were fourfold lower than meropenem for 28.3% Achr, 77.2% B. cepacia, 53.8% B. cenocepacia and 77.2% B. multivorans. Conclusion: Meropenem–vaborbactam and delafloxacin are in vitro active against Bcc and Achr.
DOI: 10.25402/fmb.21988679
title: In vitro susceptibility of nonfermenting Gram-negative rods tomeropenem–vaborbactam and delafloxacin Suppl. Table 1

description: Aim: Meropenem–vaborbactam and delafloxacin activities were not assessed against Achromobacter spp. (Achr), Burkholderia cepacia complex (Bcc) and Stenotrophomonas maltophilia (Smal). Methodology: A total of 106 Achr, 57 Bcc and 100 Smal were tested with gradient diffusion test of meropenem–vaborbactam, delafloxacin and comparators. Results: Meropenem–vaborbactam MIC50 were 4 μg/ml for Achr, 1 μg/ml for B. cepacia, 2 μg/ml for B. cenocepacia and B. multivorans, and 32 μg/ml for Smal. Delafloxacin MIC50 were 4 μg/ml for Achr, 0.25 μg/ml for B. cepacia and B. multivorans, 2 μg/ml for B. cenocepacia, and 0.5 μg/m for Smal. meropenem–vaborbactam MICs were fourfold lower than meropenem for 28.3% Achr, 77.2% B. cepacia, 53.8% B. cenocepacia and 77.2% B. multivorans. Conclusion: Meropenem–vaborbactam and delafloxacin are in vitro active against Bcc and Achr.
DOI: 10.25549/examiner-c44-19041
title: Actor arsonist, 1951

description: 3 images. Actor arsonist, 31 August 1951. Duc C. Perrin -- 21 years.
DOI: 10.25402/fmb.22269280
title: Effects of hypertonic solutions on two species of human intestinal parasites during fecal examination - Supplementary Material

description: Aim: Ova and parasite examination by flotation requires hypertonic solutions, which can damage the
egg and cyst membranes, leading to false negatives. The authors investigated the harmful effects of
ZnSO4 and C12H22O11 solutions on the ova and parasite examination. Materials & methods: The authors
processed samples using the Three Fecal Test technique. Aliquots were floated in different pH levels,
temperatures and solution densities. Results: Densities above 1.12 g/ml led structures to collapse after 6–
10 min. pH neutralization of the ZnSO4 solution did not prevent the parasites from changing. Conclusion:
All structures were altered when standard methods were performed. To delay collapse, the parasite
floating under 5 ◦C is highly desirable.
DOI: 10.25402/fmb.22269370
title: Long-term effects of COVID-19 on lungs and the clinical relevance: a 6-month prospective cohort study Supplementary Table 1

description: Background: We aimed to explore the prevalence of prolonged symptoms, pulmonary impairments and
residual disease on chest tomography (CT) in COVID-19 patients at 6 months after acute illness. Methods: In
this prospective, single-center study, hospitalized patients with radiologically and laboratory-confirmed
COVID-19 were included. Results: A high proportion of the 116 patients reported persistent symptoms
(n = 54; 46.6%). On follow-up CT, 33 patients (28.4%) demonstrated residual disease. Multivariate analyses
revealed that only neutrophil-to-lymphocyte ratio was an independent predictor for residual disease.
Conclusion: Hospitalized patients with mild/moderate COVID-19 still had persistent symptoms and were
prone to develop long-term pulmonary sequelae on chest CT. However, it did not have a significant effect
on long-term pulmonary functions.
DOI: 10.25549/examiner-c44-19912
title: United States Naval Base, boxing, bowling, basketball, 1948

description: 14 images. United States Naval Base, boxing, bowling, basketball, 17 November 1948. Linwood Bowser; Perry Eastep; Robert Tuthill; Richard Freeman; George Jones; Coach Jake Shugrue; Jack Nelson; Billie Hodger; Lieutenant John Popov.
DOI: 10.25402/fmb.22269655
title: Non-culture-based studies of the appendiceal microbiota: a systematic review - Methods-Reporting-Checklist_FM

description: Aims: To review studies examining the appendiceal microbiota and microbial changes in acute
appendicitis. Methods: After a systematic literature search, 11 studies examining the appendiceal microbiota (414 samples) using non-culture-based methods were included. Results: The appendiceal microbiota showed decreased α-diversity compared with fecal microbiota. Inflamed and uninflamed appendices showed differences in β-diversity, and there was an increased abundance of oral-associated bacteria in inflamed versus uninflamed appendices. Conclusion: The appendiceal microbiota exhibits lower α-diversity than the fecal microbiota, with an increased abundance of oral-associated bacteria. Compared with uninflamed appendices, the appendix microbiota in acute appendicitis also showed increased abundance of oral-associated bacteria, but no bacterial profile unique to either complicated or uncomplicated appendicitis was found.
DOI: 10.25402/fmb.22269658
title: Non-culture-based studies of the appendiceal microbiota: a systematic review - Table S1

description: Aims: To review studies examining the appendiceal microbiota and microbial changes in acute
appendicitis. Methods: After a systematic literature search, 11 studies examining the appendiceal microbiota (414 samples) using non-culture-based methods were included. Results: The appendiceal microbiota showed decreased α-diversity compared with fecal microbiota. Inflamed and uninflamed appendices showed differences in β-diversity, and there was an increased abundance of oral-associated bacteria in inflamed versus uninflamed appendices. Conclusion: The appendiceal microbiota exhibits lower α-diversity than the fecal microbiota, with an increased abundance of oral-associated bacteria. Compared with uninflamed appendices, the appendix microbiota in acute appendicitis also showed increased abundance of oral-associated bacteria, but no bacterial profile unique to either complicated or uncomplicated appendicitis was found.
DOI: 10.25549/examiner-c44-20146
title: Douglas strike, Long Beach, 1951

description: 3 images. Douglas strike, Long Beach, 6 September 1951. Pickets at gate.; Caption slip reads: "Photographer: Emery. Date: 1951-09-06. Assignment: Douglas strike, Long Beach plant. 7 & 54: Pickets at Gate 13 stopping out-bound employees to ask 'Got a pass?' 5:10 pm. 6: Pickets hear plea of woman driver, (unidentified) to enter parking lot to pick up husband. Pickets turned her away".
DOI: 10.25402/fmb.22269661
title: Non-culture-based studies of the appendiceal microbiota: a systematic review - Supplementary material FM

description: Aims: To review studies examining the appendiceal microbiota and microbial changes in acute
appendicitis. Methods: After a systematic literature search, 11 studies examining the appendiceal microbiota (414 samples) using non-culture-based methods were included. Results: The appendiceal microbiota showed decreased α-diversity compared with fecal microbiota. Inflamed and uninflamed appendices showed differences in β-diversity, and there was an increased abundance of oral-associated bacteria in inflamed versus uninflamed appendices. Conclusion: The appendiceal microbiota exhibits lower α-diversity than the fecal microbiota, with an increased abundance of oral-associated bacteria. Compared with uninflamed appendices, the appendix microbiota in acute appendicitis also showed increased abundance of oral-associated bacteria, but no bacterial profile unique to either complicated or uncomplicated appendicitis was found.
DOI: 10.25402/fmb.22591864
title: Cutibacterium acnes (formerly Propionibacterium acnes): friend or foe? Supplementary Table 1

description: Cutibacterium acnes protects skin homeostasis. The species has three subspecies, and associations
between C. acnes subsp. acnes and acne, C. acnes subsp. defendens and prostate cancer, and C. acnes
subsp. elongatum and progressive macular hypomelanosis have recently been suggested. Different
phylotypes/clonal complexes may cause prosthetic joint and other infections, and virulence factors such
as fimbriae, biofilms, multidrug-resistance plasmids, porphyrin, Christie–Atkins–Munch–Petersen factors
and cytotoxicity contribute to infections. Isolates are subtyped by multiplex PCR or multi- or single-locus
sequence typing; however, these methods could be better synchronized. Resistance of acneic strains to
macrolides (25.0–73.0%), clindamycin (10.0–59.0%) and tetracyclines (up to 37.0%) is worrisome, but
susceptibility testing is now facilitated by European Committee on Antimicrobial Susceptibility Testing
disk diffusion breakpoints. New therapeutic approaches include sarecycline, antimicrobial peptides and
bacteriophages.
DOI: 10.57745/smxkjt
title: Floodplain_flow_depth_at_x_13m_Exp_Debord_ISM_Case_I.tab

description: Floodplain flow depth h_f (mm) at x = 13 m and y = -0.5 m. Comparison between exp., 1D Debord, and 1D+ ISM. Flow case I.
DOI: 10.25549/examiner-c44-75618
title: Bribery Shakedown Racket, 1954

description: 7 images. Bribery Shakedown Racket, 24 May 1954. Earl C. Groves -- city plastering inspector; Joseph Micelli -- AFL Hod Carriers, Builders and Laborers Union -- local 300 international representative; William Hull -- Los Angeles Police Detective Lieutenant.; Caption slip reads: "Photographer: Forbes. Date: 1954-05-24. Reporter: Benson. Assignment: Bunko. 93: Joseph Micelli. 40: Union Representative. l. to r., 91: Joseph Micelli; Earl C. Groves. 92: Earl C. Groves; L.A.P.D. Det. Lt. William Hull. 71: Earl C. Groves. 72: (give extra time). 94: Earl C. Groves, Bldg. Inspector; Joseph Micelli Union Business Representative".
DOI: 10.25402/fmb.22770380
title: Treatment options for infections caused by multidrug-resistant Gram-negative bacteria: a guide to good clinical practice - Supplementary Tables

description: The rapid emergence of multidrug-resistant Gram-negative bacterial infections necessitates the
development of new treatments or the repurposing of available antibiotics. Here, treatment options
for treatment of these infections, recent guidelines and evidence are reviewed. Studies that included
treatment options for infections caused by multidrug-resistant Gram-negative bacteria (Enterobacterales
and nonfermenters), as well as extended-spectrum β-lactamase-producing and carbapenem-resistant
bacteria, were considered. Potential agents for the treatment of these infections, considering type of
microorganism, mechanism of resistant, source and severity of infection as well as pharmacotherapy
considerations, are summarized.
DOI: 10.57745/lc44jr
title: Floodplain_flow_depth_at_x_1m_Debord_ISM_Case_I.tab

description: Floodplain flow depth h_f (mm) at x = 1 m and y = -0.5 m. Comparison between 1D Debord and 1D+ ISM. Flow case I.
DOI: 10.25402/fmb.22802645
title: Analysis of the antifungal potential of <em>Macrocybe titans</em> extract against <em>Candida albicans</em> - Supplementary material

description: Aim: To investigate the antifungal potential of <em>Macrocybe titans</em> extracts against <em>Candida albicans</em>.
Material & methods: Extracts were obtained as aqueous (EfraMat-22 and EfraMat-45) and methanolic/ethyl acetate fractions. Results: Broth microdilution and disk diffusion assays showed that EfraMat-45 provided the best results in terms of minimum inhibitory concentration. Scanning electron microscopy analysis revealed morphological changes and slight damage on the surfaces of cells exposed to EfraMat-45 at the MIC. Fluorescence microscopy analysis of the yeasts showed cell elongation. EfraMat-45 presented high levels of phenolic compounds and flavonoids, high antioxidant activity and absence of <em>in vitro</em> cytotoxicity. Conclusion: The results indicated that the aqueous extract of <em>M. titans</em> is highly promising as an antifungal agent.
DOI: 10.34740/kaggle/dsv/8433021
title: Public Opinion on Climate Change (Updated Daily)
DOI: 10.25402/fmb.23523858
title: Comparison of Bruker Biotyper (R) and Vitek (R) - MS matrix-assisted laserdesorption/ionization–time-of-flight massspectrometry platforms for the identificationof filamentous fungi - Supplemental Table 2

description: Aims: To evaluate the performance of twomatrix-assisted laser desorption/ionization–time-of-flight mass spectrometry platforms to identify molds isolated from clinical specimens. Methods: Fifty mold isolates were analyzed on Bruker Biotyper (R) and Vitek (R) MS platforms. Two Bruker Biotyper extraction protocols were assessed alongside the US FDA-approved extraction protocol for Vitek MS. Results: The Bruker Biotyper modified NIH-developed extraction protocol correctly identified more isolates than Bruker’s protocol (56 vs 33%). For species in the manufacturers’ databases, Vitek MS correctly identified 85% of isolates, with 8% misidentifications. The Bruker Biotyper identified 64%, with no misidentifications. For
isolates not in the databases, the Bruker Biotyper did not misidentify any, and VitekMSmisidentified 36%. Conclusion: Both the VitekMS and Bruker Biotyper accurately identified the fungal isolates, however Vitek MS was more likely to misidentify isolates than the Bruker Biotyper.