cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.m5ezg7
title: Occurrence Download

description: A dataset containing 2077626407 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (28eb1a3f-1c15-4a95-931a-4af90ecb574d, e2e717bf-551a-4917-bdc9-4fa0f342c530, 1928bdf0-f5d2-11dc-8c12-b8a03c50a862)"
 ]
}

 The dataset includes 2077626407 records from 25255 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027884-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fz4mbv
title: Occurrence Download

description: A dataset containing 537271 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Essig Museum of Entomology"
 ]
}

 The dataset includes 537271 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000034-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3wresc
title: Occurrence Download

description: A dataset containing 531878 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Nansen Legacy Bacterial and Archaeal community composition"
 ]
}

 The dataset includes 531878 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000032-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15285402
title: Dataset for "Reducing segregation in vibrated binary-sized granular mixtures by excessive small particle introduction" published in Granular Matter

description: This repository contains the simulation and analysis code, as well as the raw data used to generate the figures presented in the paper "Reducing segregation in vibrated binary-sized granular mixtures by excessive small particle introduction," published in Granular Matter.

Simulation and Analysis Codes:

The core simulation and analysis scripts are located primarily within the origin folder:



origin/: This directory serves as a template and includes the following base files:



base_input.txt: Defines the input parameters for the simulation. This file is modified by various_para.sh for different parameter sets.

base_make_initial.c: A C program to construct the initial particle configurations.

base_lammps.lmp: The main LAMMPS simulation script.

base_analysis.c: A C program to analyze the radial distribution function (RDF).

base_begin_pc.sh: A shell script that executes the main simulation and analysis workflow (base_make_initial.c, base_lammps.lmp, base_analysis.c). Please modify this script (base_begin_pc.sh) to match your specific computational environment.




Other important scripts include:



various_para.sh: This shell script automates the process of running simulations for various parameters. It creates copies of the origin folder, modifies the parameters in base_input.txt within each new folder, assigns appropriate folder names, and then executes base_begin_pc.sh in each folder.

base_analysis_sk.py: A Python script designed to calculate the structure factor.

sk.sh: This shell script distributes base_analysis_sk.py to each parameter-specific folder (created by various_para.sh) and executes the Python script to perform the structure factor calculation.


Raw Data for Figures:

The raw data used to generate the figures are organized into separate folders (please note that Figure 1 is a schematic representation and does not have a corresponding data folder):



data_fig2-5/: Raw data for Figures 2-5.

data_fig6-8/: Raw data for Figures 6-8.

data_fig9-11/: Raw data for Figures 9-11.

data_fig12-14/: Raw data for Figures 12-14.

data_fig15-17/: Raw data for Figures 15-17.

data_fig18-20/: Raw data for Figures 18-20.


Within each of these data_fig* folders, the file data_main_large.dump contains the trajectory data specifically for the large particles.
DOI: 10.5281/zenodo.15285403
title: Dataset for "Reducing segregation in vibrated binary-sized granular mixtures by excessive small particle introduction" published in Granular Matter

description: This repository contains the simulation and analysis code, as well as the raw data used to generate the figures presented in the paper "Reducing segregation in vibrated binary-sized granular mixtures by excessive small particle introduction," published in Granular Matter.

Simulation and Analysis Codes:

The core simulation and analysis scripts are located primarily within the origin folder:



origin/: This directory serves as a template and includes the following base files:



base_input.txt: Defines the input parameters for the simulation. This file is modified by various_para.sh for different parameter sets.

base_make_initial.c: A C program to construct the initial particle configurations.

base_lammps.lmp: The main LAMMPS simulation script.

base_analysis.c: A C program to analyze the radial distribution function (RDF).

base_begin_pc.sh: A shell script that executes the main simulation and analysis workflow (base_make_initial.c, base_lammps.lmp, base_analysis.c). Please modify this script (base_begin_pc.sh) to match your specific computational environment.




Other important scripts include:



various_para.sh: This shell script automates the process of running simulations for various parameters. It creates copies of the origin folder, modifies the parameters in base_input.txt within each new folder, assigns appropriate folder names, and then executes base_begin_pc.sh in each folder.

base_analysis_sk.py: A Python script designed to calculate the structure factor.

sk.sh: This shell script distributes base_analysis_sk.py to each parameter-specific folder (created by various_para.sh) and executes the Python script to perform the structure factor calculation.


Raw Data for Figures:

The raw data used to generate the figures are organized into separate folders (please note that Figure 1 is a schematic representation and does not have a corresponding data folder):



data_fig2-5/: Raw data for Figures 2-5.

data_fig6-8/: Raw data for Figures 6-8.

data_fig9-11/: Raw data for Figures 9-11.

data_fig12-14/: Raw data for Figures 12-14.

data_fig15-17/: Raw data for Figures 15-17.

data_fig18-20/: Raw data for Figures 18-20.


Within each of these data_fig* folders, the file data_main_large.dump contains the trajectory data specifically for the large particles.
DOI: 10.15468/dl.tm3w7c
title: Occurrence Download

description: A dataset containing 6063568 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 6063568 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000030-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bab6r3
title: Occurrence Download

description: A dataset containing 537460 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Österreichische Mykologische Gesellschaft - Austrian Mycological Society Observations"
 ]
}

 The dataset includes 537460 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000031-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/11574363
title: Full TMDB Movies Dataset 2024 (1M Movies)
DOI: 10.34740/kaggle/dsv/9479114
title: Mango_Quality_Grading_Dataset
DOI: 10.15468/dl.swys8w
title: Occurrence Download

description: A dataset containing 48299592 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 2014-2024"
 ]
}

 The dataset includes 48299592 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000027-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cx66tq
title: Occurrence Download

description: A dataset containing 531075 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is National Wetland Inventory (NV)"
 ]
}

 The dataset includes 531075 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000038-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wh3d5d
title: Occurrence Download

description: A dataset containing 537197 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is University of California Museum of Paleontology"
 ]
}

 The dataset includes 537197 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000037-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15286735
title: Future wind and bark beetle disturbance predictions under 4.5 and 8.5 RCP scenarios in Germany (2041-2070)

description: Geopackage with future wind and bark beetle forest disturbed (%) under 4.5 and 8.5 RCP scenarios in Germany (2041-2070). In the attribute table, 5 columns are shown:



Fid: id of grid cell

predict_rcp45: predictions under RCP 4.5

change_rcp45: relative change in % of forest disturbed from the current model predictions to the future model predictions based on the RCP 4.5 scenario

predict_rcp85: predictions under RCP 8.5

change_rcp85: relative change in % of forest disturbed from the current model predictions to the future model predictions based on the RCP 4.5 scenario


For more details on the methodology, see Matta et al. 2025.
DOI: 10.15468/dl.73s23e
title: Occurrence Download

description: A dataset containing 529798 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Observatoire de la Biodiversité des Jardins (OBJ)-Données Observatoire des Papillons des Jardins"
 ]
}

 The dataset includes 529798 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000039-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y4m8un
title: Occurrence Download

description: A dataset containing 231666 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Viet Nam",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 231666 records from 384 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000033-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26303476
title: Supplementary materials. Do laws provoke or prevent green grabbing? A systematic review.

description: As the ecological transition accelerates, green grabbing is expected to intensify. Our systematic review of 80 empirical cases offers an overview of how soft and hard legal frameworks can both enable and prevent green land acquisitions. While current international development policies legitimise, and national laws operationalise green grabs, accelerating the shift from communal to private property regimes, some cases highlight the transformative potential of “law from below.” These bottom-up legal reforms, driven by grassroots initiatives, may offer meaningful resistance to mitigate the impacts of green grabbing.
DOI: 10.15468/dl.qnrrdb
title: Occurrence Download

description: A dataset containing 81787 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Bird Ringing Centre in Sweden (NRM)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Chroicocephalus ridibundus (Linnaeus, 1766)",
 "Year 1000-2020"
 ]
}

 The dataset includes 81787 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000040-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfhj3x
title: Occurrence Download

description: A dataset containing 129431 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Greece",
 "InstitutionCode is ld",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 129431 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000036-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hz8zej
title: Occurrence Download

description: A dataset containing 523215 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Suivi Photographique des Insectes Pollinisateurs (SPIPOLL)"
 ]
}

 The dataset includes 523215 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000042-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8vy3au
title: Occurrence Download

description: A dataset containing 533675 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Lepidoptera Eastern Fennoscandia (Luomus) (LEPFEN)"
 ]
}

 The dataset includes 533675 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000041-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nep9k9
title: Occurrence Download

description: A dataset containing 525406 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is KUBI Invertebrate Paleontology Collection"
 ]
}

 The dataset includes 525406 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000043-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28852193
title: 20250423_Scripts.docx

description: Retroelements (REs) constitute approximately 40% of the mammalian genome and can cause large-scale genomic changes. Although the roles of REs in aging have been studied, the specific types of REs transcribed during aging, their tissue-specific activation, and their potential insertion into other genomic loci remain unclear. This project examines whether specific RE RNA is upregulated in the liver during aging and inserted into other loci. Long-read genome sequencing analysis revealed new cell-specific RE insertions in the cells of the liver throughout the lifespan of both young and old mice. Although some insertions differ between individuals in the genome were identified, we did not find any difference in the number of insertions between ages. Meanwhile, transcripts from a specific RE (Chr2_RE) were upregulated in the liver of old mice, and chimeric reads between the Chr2_RE region and other loci were detected only in old mice through short-read genome sequencing, suggesting age-dependent insertion of Chr2_RE into other loci. This study provides new insights into the role of REs in aging.
DOI: 10.6084/m9.figshare.28852193.v1
title: 20250423_Scripts.docx

description: Retroelements (REs) constitute approximately 40% of the mammalian genome and can cause large-scale genomic changes. Although the roles of REs in aging have been studied, the specific types of REs transcribed during aging, their tissue-specific activation, and their potential insertion into other genomic loci remain unclear. This project examines whether specific RE RNA is upregulated in the liver during aging and inserted into other loci. Long-read genome sequencing analysis revealed new cell-specific RE insertions in the cells of the liver throughout the lifespan of both young and old mice. Although some insertions differ between individuals in the genome were identified, we did not find any difference in the number of insertions between ages. Meanwhile, transcripts from a specific RE (Chr2_RE) were upregulated in the liver of old mice, and chimeric reads between the Chr2_RE region and other loci were detected only in old mice through short-read genome sequencing, suggesting age-dependent insertion of Chr2_RE into other loci. This study provides new insights into the role of REs in aging.
DOI: 10.15468/dl.ygbhzm
title: Occurrence Download

description: A dataset containing 525734 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The Finnish Nature League's Spring monitoring"
 ]
}

 The dataset includes 525734 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000050-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q39uf3
title: Occurrence Download

description: A dataset containing 511273 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CRBPO : STOC, Baguage"
 ]
}

 The dataset includes 511273 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000051-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bjf36p
title: Occurrence Download

description: A dataset containing 522198 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is RECORD Vascular Plant Data"
 ]
}

 The dataset includes 522198 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000049-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rq4trw
title: Occurrence Download

description: A dataset containing 62963 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.countrycode = 'VN'
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.taxonkey = 6 OR occurrence.acceptedtaxonkey = 6 OR occurrence.kingdomkey = 6 OR occurrence.phylumkey = 6 OR occurrence.classkey = 6 OR occurrence.orderkey = 6 OR occurrence.familykey = 6 OR occurrence.genuskey = 6 OR occurrence.specieskey = 6)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 62963 records were derived from 279 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000048-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10824849
title: Calibration Bias Evaluation and Correction of S-Band Ground-Based Radar Reflectivity Using Ku-Band Space-Borne Radar Observations Along the East Coast of India
DOI: 10.5281/zenodo.10824850
title: Calibration Bias Evaluation and Correction of S-Band Ground-Based Radar Reflectivity Using Ku-Band Space-Borne Radar Observations Along the East Coast of India
DOI: 10.5281/zenodo.15286809
title: Calibration Bias Evaluation and Correction of S-Band Ground-Based Radar Reflectivity Using Ku-Band Space-Borne Radar Observations Along the East Coast of India
DOI: 10.15468/dl.jsj5uf
title: Occurrence Download

description: A dataset containing 513822 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Naturalis Biodiversity Center (NL) - Paleontology"
 ]
}

 The dataset includes 513822 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000053-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ahs24w
title: Occurrence Download

description: A dataset containing 511417 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is All taxa records for Leicestershire and Rutland"
 ]
}

 The dataset includes 511417 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000054-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cns24q
title: Occurrence Download

description: A dataset containing 505339 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is SLU Aqua Institute of Freshwater Research Swedish Electrofishing Registry - SERS"
 ]
}

 The dataset includes 505339 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000055-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/11574584
title: Daily Public Opinion on Israel-Palestine War
DOI: 10.15468/dl.8zkj2h
title: Occurrence Download

description: A dataset containing 510323 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Malacology Collection at the Academy of Natural Sciences of Philadelphia"
 ]
}

 The dataset includes 510323 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000060-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jhhsqh
title: Occurrence Download

description: A dataset containing 510046 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is National Butterfly Recording Scheme in Finland (NAFI)"
 ]
}

 The dataset includes 510046 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000059-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.