cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26830645
title: Supplementary Material for: Defining Success in the Delivery of Fertility-Related Care for Patients with Differences of Sex Development

description: Introduction: Individuals with differences of sex development (DSD) experience complex, often competing, medical and psychosocial challenges surrounding fertility. The study aimed to characterize how "success" in fertility-related care is conceptualized and attained among individuals with a DSD, their parents or caregivers, healthcare providers, and other stakeholders.

Methods: As part of a larger study, DSD stakeholders (n = 110) participated in semi-structured interviews covering the clinical care of patients with DSD. Primary questions included: “What is a successful outcome in DSD care?” and “How do you achieve it?” with fertility as either a spontaneous or suggested topic of discussion. Transcripts were analyzed utilizing a phenomenological approach. This analysis focuses on the extracted themes related to fertility.

Results: Fertility was discussed by 19/24 individuals with DSD, 12/19 parents or caregivers, 35/37 healthcare providers, and 19/30 other stakeholders. Components of successful fertility-related care included: 1) specific discussions surrounding the relationship between DSD and fertility potential, options for fertility preservation, and options for non-biologic parenthood; 2) early and repeated introduction of these topics; and 3) consideration of age, developmental maturity, and cultural context on decisions around fertility. Challenges include the lack of fertility outcome data in this population and the irreversibility of gonadectomy. Trade-offs identified included anatomic typicality versus function, fertility preservation versus cancer risk reduction, and balancing the different priorities of stakeholders. 

Discussion/Conclusions: A wide range of DSD stakeholders highlighted the importance of addressing fertility concerns in achieving favorable outcomes for individuals with DSD. These stakeholder perspectives should inform fertility-related education, shared decision-making processes, and clinical care.
DOI: 10.15468/dl.63sqev
title: Occurrence Download

description: A dataset containing 24306 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Passiflora foetida L."
 ]
}

 The dataset includes 24306 records from 563 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008755-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15783/c71c7d
title: CRAWDAD dataset wisc/wiscape (v. 2012-08-03)

description: Dataset of network performance data collected with WiScape framework from three 
commercial cellular wireless networks.
description: Changelog: the initial version
DOI: 10.17632/4wn2mdtcwb.1
title: S and O isotopic and elemental composition features of deep-sea coral

description: These data demonstrate that the compositional profile distribution along the transect of deep-sea coral, including the S-O isotopes and element (S/Ca and Mg/Ca) compositions.
DOI: 10.17632/b4pjpdhxz9.1
title: Business model keywords dictionary

description: This document contains a dictionary of theory and practice-derived keywords used for content analysis of business models. The keywords are grouped by business model element and building block.
DOI: 10.25345/c5zp3w507
title: MassIVE MSV000090812 - MudPIT analyses of the Plasmodium falciparum proteins pulled down by the kalihinol-analogue, MED6-189
title: Immunoprecipitation followed by MudPIT mass spectrometry-- Mid- to late-stage asexual parasites were collected, purified, and were resuspended in 50mM Tris-HCl pH 7.5, 300mM NaCl, 0.5mM EDTA, 0.5mM EGTA, 2mM AEBSF, 0.5% Triton X-100, 20mM N-ethymaleimide and 1mM AEBSF and EDTA-free protease inhibitor cocktail (Roche). Post cell lysis solution was homogenized via sonication for 6-9 rounds at power level 3. The soluble extracts were centrifuged at 13,000g for 15min at 4C. The lysates were precleared with Dynabeads MyOne TM Streptavidin T1 (Invitrogen) for 1hr at 4C. 100uM of biotinylated kalihinol analogue (MED6-118) was added to each sample with the exception of DMSO added to a negative control and incubated for 1hr at 4C. Following drug incubation fresh Dynabeads MyOne TM Streptavidin T1 beads were added to each sample and incubated overnight at 4C. Dynabeads were used to precipitate biotinylated drug-protein complexes and washed three times with buffer (PBS, 0.05% Tween20). Proteins were eluted using 50mM Tris-HCl pH 6.7, 100mM DTT and 2% SDS. The eluent was subsequently precipitated in 20% TCA followed by cold acetone washes. The urea-denatured, reduced, alkylated, and digested proteins were analyzed by Multidimensional Protein Identification Technology (MudPIT) on a linear ion trap tandem mass spectrometer coupled to an Agilent 1100 series HPLC as described previously. Proteomics data processing and analysis-- Tandem mass (MS/MS) spectra were interpreted using ProluCID v.1.3.3 against a database consisting of 5527 non-redundant (NR) Plasmodium falciparum 3D7 proteins (PlasmoDB-42 release), 36661 NR human proteins (NCBI, 2018-03-30 release), 419 usual contaminants (human keratins, IgGs, and proteolytic enzymes). DTASelect v.1.9 and swallow v.0.0.1, an in-house developed software (https://github.com/tzw-wen/kite), were used to control FDRs at less than 1.2%.
DOI: 10.3886/e192924v1
title: Data and Code for: The Dynamic Response of Municipal Budgets to Revenue Shocks

description: We study the fiscal and tax response to intergovernmental grants, exploiting quasi-experimental variation within Germany’s fiscal equalization scheme triggered by Census revisions of population counts. Municipal budgets do not adjust instantly. Instead, spending and investments adapt within five years to revenue gains, while the adjustment to losses is more rapid. Yet, the long-run response is symmetric. The tax response is particularly slow, stretching over more than a decade. Well-known empirical “anomalies” such as the so-called flypaper effect may thus reflect a short-run phenomenon, while long-run fiscal behavior appears more consistent with standard theories of fiscal federalism.
description: municipalities in Bavaria, Baden-Wuerttemberg, Hessia, North-Rhine Westphalia, Lower Saxony.
DOI: 10.4121/22270498
title: Videos underlying the publication: A Novel MPC Formulation for Dynamic Target Tracking with Increased Area Coverage for Search-and-Rescue Robots

description: This dataset contains the videos of the trajectories of a robot and victims in a simulated search-and-rescue scenario, the videos of experiments performed with robots in real life, and the tables with the uncertainty values used in the simulations.<br>The videos of the trajectories of a robot and victims in a simulated search-and-rescue scenario consider five different approaches for comparison purposes: our <strong>tube-based Model Predictive Control</strong> (MPC) approach; a <strong>Farrohksiar tube-based MPC</strong> approach; an <strong>A*-MPC</strong> approach; <strong>randomized MPC</strong> approach; and a <strong>Boustrophedon-motion-A*</strong> approach. The scenario consisted on a disaster building in which the robot has to explore the environment to detect 3 victims and avoid 5 static obstacles, and finally go to the exit point, while the victims move accordingly to an established crowd evacuation model.<br>The videos of experiments of our <strong>tube-based Model Predictive Control</strong> (MPC) approach with robots in real life consist of three scenarios in a lab environment, with a TurtleBot 3 Burger robot behaving as the search-and-rescue robot, an iRobot Create 3 robot behaving as the victim, and 3 static obstacles.<br>The dataset also contains the values of the uncertainties, i.e., the non-smoothness map values used for x and y coordinates.
DOI: 10.5066/p13jcj2i
title: Correlation-derived seismic phase arrival times from matched-filter studies of Yellowstone (Wyoming) 2017, Kilauea volcano (Hawaii) 2018, and Ridgecrest (California) 2019: A dataset for developing phase-picking neural networks

description: This dataset contains correlation-derived seismic phase arrival times from three different studies:
1. Maple Creek Earthquake Swarm, Yellowstone, Wyoming, June 11 to September 6, 2017:
Shelly, D. R., & J. L. Hardebeck (2019). Illuminating faulting complexity of the 2017 Yellowstone Maple Creek earthquake swarm. Geophysical Research Letters, 46, 2544– 2552. https://doi.org/10.1029/2018GL081607

2. Kilauea summit eruption earthquake sequence, Hawaii, April 29 to August 6, 2018:
Shelly, D. R., & W. A. Thelen (2019). Anatomy of a caldera collapse: Kīlauea 2018 summit seismicity sequence in high resolution. Geophysical Research Letters, 46, 14395– 14403. https://doi.org/10.1029/2019GL085636
Shelly, D.R., and W. A. Thelen, 2020, High resolution earthquake catalogs from the 2018 Kilauea eruption sequence: U.S. Geological Survey data release, https://doi.org/10.5066/P9DMIFMW

3. Ridgecrest earthquake sequence, California, July 4-16, 2019:
Shelly, D. R. (2020) A High‐Resolution Seismic Catalog for the Initial 2019 Ridgecrest Earthquake Sequence: Foreshocks, Aftershocks, and Faulting Complexity. Seismological Research Letters, 91 (4): 1971–1978. doi: https://doi.org/10.1785/0220190309
Shelly, D.R., 2020, A High-Resolution Seismic Catalog for the Initial 2019 Ridgecrest Earthquake Sequence: U.S. Geological Survey data release, https://doi.org/10.5066/P9JN6H0N.

One comma separated value (CSV) file is uploaded for each sequence.  Each file contains the following fields:
 
template_id:  The assigned ID for the template
 
match_id: the assigned ID for the detected event
 
network: The network code for the seismic station
 
station: The name of the seismic station
 
phase: Seismic phase, P or S
 
arrival: The arrival time, calculated based on the template phase pick time and the correlation-derived differential time, given in epoch time (seconds since January 1, 1970, UTC)
 
weight: The weighting assigned in the original study, (0.1 +3ccdiff)ccmax2 (see explanations of ccdiff and ccmax below)
 
mag: The magnitude determined for the detected event (see original study for details)
 
ccmax: The peak cross-correlation coefficient (the largest absolute value correlation coefficient, including its sign)
 
ccdiff: The difference between the absolute value of ccmax and the second largest absolute value correlation peak
 
chanloc: The seismic channel and location codes, separated by “.”
DOI: 10.5067/7y7ksa1qnqp8
title: OMPS-NPP L3 NM Ozone (O3) Total Column 1.0 deg grid daily V2
DOI: 10.5281/zenodo.10656959
title: Southeast Atlantic foraminifera N isotope data from winter 2017

description: These data present modern foraminifer tissue- and shell-bound nitrogen isotope (d15N) measurements collected inside and outside of an Agulhas Ring in the southeast Atlantic Ocean (along the eastern SAMBA transect; 34.5°S, between 2.6 - 14.3°E).  Samples inside ("Eddy") and outside ("Atlantic") of the anticyclonic ring were collected on board the R/V S.A. Agulhas II between 17 - 27 July 2017 (austral winter) using surface (0 - 200 m) net tows. Additional data show nitrogen isotopes from bulk zooplankton N (surface net tow, 0 - 200 m), and particulate organic matter (> 0.3 μm, 0 - 175 m) from the same transect. 

The dataset provides insight into the influence of Agulhas Rings on the nitrogen isotope composition of particulates and microorganisms in the Cape Basin, and has been used in ground-truthing the foraminifer-bound nitrogen isotope palaeo-proxy in this region.
DOI: 10.5281/zenodo.12731531
title: Decentralized Applications Network Structure

description: This dataset encompasses the network structure of decentralized applications (dApps) mainly deployed in the Ethereum blockchain and other platforms such as Binance, Optimism, Polygon, Astar, Shiden, and Thundercore. Each dApp's network structure is represented through a CSV which includes the following information:File: The name of the Solidity fileSource_Contract: The name of the contract that calls the Target contract.Target_Contract: The name of the contract that is called by the Source contract.Source_Function: The name of the function that calls the Target function.Target_Function: The name of the function called by the Source function.Chain: The chain of function calls.
DOI: 10.5281/zenodo.13695544
title: Dataset for "Lithospheric structure above the Northern Appalachian Anomaly: Initial results from the NEST array"

description: The preprocessed seismic traces used in the receiver function analysis and resulting negative velocity gradient (NVG) depths. This dataset was used in, "Lithospheric structure above the Northern Appalachian Anomaly: Initial results from the NEST array" by Kimberly Espinal, Maureen Long, Paul Karabinos, and James R. Bourke. The manuscript will soon be available.

The receiver functions were processed using a version of the software by Jeffrey Park and Vadim Levin (https://seiscode.iris.washington.edu/projects/rfsyn). 
description: The NEST seismic experiment was supported by Yale University, Rutgers University, and the National Science Foundation under grants EAR-2147536 (Yale), EAR-2146804 (Williams), and EAR-2147426 (Rutgers).
DOI: 10.5281/zenodo.13772792
title: Adjacency matrices for dApps contracts and functions network

description: This dataset encompasses the network structure of decentralized applications (dApps) mainly deployed in the Ethereum blockchain and other platforms such as Binance, Optimism, Polygon, Astar, Shiden, and Thundercore.
DOI: 10.5281/zenodo.7648606
title: Southeast Atlantic nitrate isotope data from winter 2017

description: These data are a compilation of nitrogen (d15N) and oxygen (d18O) isotope measurements of nitrate from 0 to 1000m, from across the southeast section of the SAMBA transect (34.5°S, spanning 0 - 17.8°E). Samples were collected on board the R/V S.A. Agulhas II between 17 - 27 July 2017 (austral winter) using a Niskin bottle rosette and include samples taken from within an Agulhas Ring. The data help characterize the isotopic composition of southeast Atlantic water masses, and are useful in providing an overview of the dynamics of nitrogen cycling in the region.
description: This dataset was collected as part of the PhD project, 'Nitrogen cycling in the subtropical southeast Atlantic and southwest Indian Oceans as recorded by the nitrogen isotopes of modern planktic foraminifera' and funded through grants NRF-129320 and NRF-116142. Cite (as of February 2023): Granger, R., Smart, S.M., Foreman, A., Auderset, A., Campbell, E.C., Marshall, T.A., Haug, G.H., D.M. Sigman, Martínez-García, A., Fawcett., S.E. (In prep) 'Tracking Agulhas leakage in the South Atlantic using modern planktic foraminifera nitrogen isotopes.'
DOI: 10.6069/5a05-5x26
title: MED6-189: An effective Antimalarial Kalihinol Analog Targets Plasmodium falciparum Apicoplast and Membrane Biogenesis

description: Members of the Isocyanoterpene (ICT) family of sponge-derived natural products have been shown to have potent activity against the human malaria parasite Plasmodium falciparum; however, no front-runner drug-like candidates have been identified and their mechanism of action remain unknown heretofore. Here we report MED6-189, an analogue of the kalihinol subfamily of ICTs that demonstrates potent antimalarial activity both in vitro and in vivo. The compound is effective against drug-sensitive and -resistant P. falciparum strains and blocks both intraerythrocytic asexual replication and sexual differentiation. In vivo efficacy studies using a humanized mouse model of P. falciparum infection further confirmed the strong efficacy of the compound in animals with no apparent hemolytic activity nor other major findings of toxicity. The compound was also effective against P. knowlesi. Cell biological analyses revealed that the compound is targeted primarily to the parasite apicoplast and acts by inhibiting lipid biogenesis and trafficking. Consistent with this mode of action, genetic analyses in P. falciparum identified mutants with reduced susceptibility to the drug due to a mutation in the SEC13 gene encoding a component of the parasite secretory machinery. Using yeast as a model system we show that altered expression of the yeast Sec13 also affects susceptibility to MED6-189. The high potency of MED6-189 in vitro and in vivo, its broad range efficacy, excellent therapeutic profile, and unique mode of action make it an excellent addition to the antimalarial drug pipeline.
DOI: 10.6084/m9.figshare.25202615
title: Supplementary Material for: Prevalence, risk factors, and prognostic value of anxiety and depression in acute myeloid leukemia

description: Introduction: Limited studies report anxiety and depression prevalence and their correlations with prognosis in acute myeloid leukemia (AML). Even worse, their risk factors in AML remained unclear. This study aimed to investigate the prevalence, risk factors, and prognostic value of anxiety and depression in AML patients.
Methods: Totally, 132 de novo AML patients, 60 non-malignant hematological disease patients (as disease controls) and 60 healthy controls were enrolled. Anxiety and depression status were evaluated by Hospital Anxiety and Depression Scale (HADS) in all participants. 
Results: HADS-anxiety score (8.2±3.2 vs. 6.1±2.9 vs. 4.7±2.8), anxiety rate (48.5% vs. 25.0% vs. 10.0%), HADS-depression score (7.8±3.0 vs. 5.8±3.0 vs. 4.0±2.8) and depression rate (43.2% vs. 23.3% vs. 8.3%) were highest in AML patients, followed by disease controls, and the lowest in healthy controls (all P&lt;0.001). Multivariate logistic regression analysis identified that factors independently associated with anxiety included male (P=0.002, odds ratio (OR)=0.240), smoking (P=0.043, OR=2.474), education duration (P=0.024, OR=0.889) and NCCN high-risk stratification (P=0.008, OR=2.347); while those independently associated with depression were age (P=0.005, OR=1.055), single/divorced/widowed status (P=0.014, OR=3.149), NCCN high-risk stratification (P=0.002, OR=3.077) and WBC (P&lt;0.001, OR=1.062). Additionally, depression was correlated with shorter accumulating event-free survival (P=0.012) and overall survival (P=0.041) in AML patients, whereas anxiety was not.
Conclusions: Anxiety and depression are prevalent, among which depression is associated with poor survival profile, but anxiety is not; moreover, age, male, education, single/divorced/widowed status, smoking, NCCN high-risk stratification and WBC were independent related factors of anxiety and depression in AML patients.
DOI: 10.15121/2283064
title: Utah FORGE: Southwestern Utah Magnetotelluric (MT) Data

description: This comprehensive magnetotellurics (MT) dataset, which covers southwestern Utah, integrates 600 sites from various surveys, including those from the Utah FORGE, SubTER, and Play Fairway projects, all of which are linked below. The core of this dataset is the use of a 3D finite element (FE) algorithm for inversion imaging, allowing for detailed analysis of the MT data. Provided here are all .edi files, the 3D finite element mesh (with a readme file), graphic slices, node graphics, resistivity graphics, and reports on the acquisition areas and inversion.
DOI: 10.21227/6sda-hn78
title: Benign Breast Tumor Dataset

description: This dataset has information of 83 patients from India. This dataset contains patients’ clinical history, histopathological features, and mammogram.
DOI: 10.25345/c5tm72559
title: MassIVE MSV000090667 - A Potent Kalihinol Analog Targeting Membrane Trafficking Inhibits falciparum Malaria in Humanized Mice
title: Cellular Thermal Shift Assay (CETSA) to interrogate interactions between Kalihinol analog Med6-189 and Plasmodium falciparum proteins.
DOI: 10.3886/e183642v1
title: Data and code for: Optimal sin taxation and market power

description: Replication code for <b>Optimal sin taxation and market power</b>. Paper abstract: <br>We study how market power impacts the efficiency and redistributive properties of sin taxation, with an empirical application to sugar-sweetened beverage taxation. We estimate a detailed equilibrium model of the UK drinks market, which we embed in a tax design framework to solve for optimal sugar-sweetened beverage tax policy. Positive price-cost margins on drinks create inefficiencies, which act to lower the optimal rate compared with a perfectly competitive setting. However, since profits mainly accrue to the rich, this is partially mitigated under social preferences for equity. Overall, ignoring market power when setting the optimal sugar-sweetened beverage tax rate leads to welfare gains that are 40% below those at the optimum. <br>
description: Households residing in Great Britain.
DOI: 10.48529/nqzx-f196
title: National Panel Survey 2019-2020
title: UGA_2019_UNPS_v03_M
DOI: 10.5066/p9nm8k8w
title: Application of the National Hydrologic Model Infrastructure with the Precipitation-Runoff Modeling System (NHM-PRMS), by HRU Calibrated Version
DOI: 10.5281/zenodo.10974142
title: Sentinel-1 and TanDEM-X SAR data - Fehmarn Belt

description: Sentinel1 A and B SAR data processed by NORCE and used for manuscript JGR Oceans 2024. TanDEM-X SAR data processed at Chalmers University of Technology and used for manuscript JGR oceans 2024.
DOI: 10.5281/zenodo.12616926
title: Two-Decadal Variability of Lacustrine Groundwater Discharge: Coupled Controls from Weather and Hydrologic Changes

description: This is the dataset of radon concentration in lake water and groundwater.
DOI: 10.5281/zenodo.8325656
title: Two-Decadal Variability of Lacustrine Groundwater Discharge: Coupled Controls from Weather and Hydrologic Changes

description: The lake water level and groundwater level in TEL
DOI: 10.5281/zenodo.8325755
title: Two-Decadal Variability of Lacustrine Groundwater Discharge: Coupled Controls from Weather and Hydrologic Changes

description: Meteorological data in oxbow lakes
DOI: 10.5281/zenodo.8325836
title: Two-Decadal Variability of Lacustrine Groundwater Discharge: Coupled Controls from Weather and Hydrologic Changes

description: Hydrological data of Yangtze River
DOI: 10.5517/cc6pf9l
title: CCDC 199339: Experimental Crystal Structure Determination

description: Related Article: M.Nieger, J.Lehmann|2002|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.24592716.v1
title: <b>Molecular docking studies and molecular dynamic simulation t</b><b>o identify GSK-3β inhibitors for Alzheimer’s disease</b>

description: Our focus is mainly based on an <i>in-silico</i> approach particularly focused on library generation first we have drawn imidazo [1,5-a]pyridine-3-carboxamide (IMID 2) scaffold structure at Enamine and subjected it to substructure search to target the receptor grid region (ATP-competitive site) of 6Y9R.