cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.835154
title: PumaPlex 1.0: Data generated during the development of the SNP markers and SNP genotypes of pumas

description: Pumas are one of the most studied terrestrial mammals because of their widespread distribution, substantial ecological impacts, and conflicts with humans. Extensive efforts, often employing genetic methods, are undertaken to manage this species. However, the comparison of population genetic data is difficult because few of the microsatellite loci chosen are shared across research programs. Here, we describe the development of PumaPlex, a high-throughput assay to genotype 25 single nucleotide polymorphisms in pumas. We validated PumaPlex in more than 700 North American pumas (Puma concolor couguar), and demonstrated its ability to generate reproducible genotypes and accurately identify individuals. Furthermore, we compared PumaPlex with traditional genotyping of 12 microsatellite loci in fecal DNA samples and found that PumaPlex produced significantly more genotypes with fewer false alleles. PumaPlex promotes the cross-laboratory comparison of genotypes, is easily expandable in the future, and is a valuable tool for the genetic monitoring and management of North American puma populations.
description: Summary of the files (tab-delimited text format) in this Puma_SNP_Data.zip archive:1. Puma_cDNA_transcriptome.tab - this file contains the transcriptome assembly which includes all contigs &gt;100 bp in length. The first column is the sequence identifier, the second column is the sequence.2. Raw_SNPs_identified.vcf.tab - this file contains the initial SNPs identified in this study coded in the in the standard VCF format. VCF format is a tab-delimited format described as part of the 1,000 genomes project (see the attached file VCFv4.1.pdf for a description). All lines beginning with a '#' are comment/header lines.3. Puma_SNP_genotypes.tab - this file contains SNP genotypes and geographic information for the 727 pumas described in this study. The first column is the puma identifier, the second column is the latitude, the third column is the longitude, fourth column is the group (AZ or CULVER), and the remaining columns are the genotypes for loci PP01-PP25. Missing genotypes are shown as a '0'.4. Puma_Fecal_SNP_genotypes.tab - this file contains SNP genotype data for the 46 fecal DNA samples used in this study. The first column in the fecal DNA identified, the second column is the replicate number, then the remaining columns are genotypes at the 25 SNP and 12 microsatellite loci. Missing genotypes are shown as a '0'.
description: Supplement to: Fitak, Robert; Naidu, Ashwin; Thompson, Ron; Culver, Melanie (2016): PumaPlex 1.0: a new panel of SNP markers for the genetic management of North American pumas (Puma concolor). 7(1), 13-27
DOI: 10.1594/pangaea.719520
title: Other measurements at 10 m from station Bondville (2001-11)

description: Version 2, 2009-06-15
DOI: 10.1594/pangaea.836880
title: Metallic Fluence Monitors and J-value standards

description: Utilizing the neutron-irradiation parameter J is one of the major uncertainties in 40Ar/39Ar dating. The associated error of the individual J-value for a sample of unknown age depends on the accuracy of the age of the geological standards, the fast-neutron fluence distribution in the reactor and the distances between standards and samples during irradiation. While it is generally assumed that rotating irradiation evens out radial neutron fluence gradients, we observed axial and radial variations of the J-values in sample irradiations in the rotating channels of two reactors. To quantify them, we included three-dimensionally distributed metallic fast- (Ni) and thermal- (Co) neutron fluence monitors in three irradiations and geological age standards in three more. Two irradiations were carried out under Cd-shielding in the FRG1 reactor in Geesthacht, Germany, and four without Cd-shielding in the LVR-15 reactor in Řež, Czech Republic. The 58Ni(nf,p)58Co activation reaction and γ-spectrometry of the 811 keV peak associated with the subsequent decay of 58Co to 58Fe allow to calculate the fast-neutron fluence. The fast-neutron fluences at known positions in the irradiation container correlate with the J-values determined by mass-spectrometric 40Ar/39Ar measurements of the geological age standards. Ra-dial neutron fluence gradients are up to 1.8 %/cm in FRG1 and up to 2.2 %/cm in LVR-15; the corre-sponding axial gradients are up to 5.9 and 2.1 %/cm. We conclude that sample rotation might not al-ways suffice to meet the needs of high-precision dating and gradient monitoring can be crucial.
description: The .zip-archive contains the data of 40Ar/39Ar analyses and gammaspetrometric analyses related to sample irradiations FGA002, FGA003, FGA012, FGA014, FGA015, FGA016 in reactors FRG1 and LVR-15. Argon data are reported following the norms of Renne et al. [2009]. Gammaspectrometric analyses are saved in the .sp1 format of GammaVision software Version 5.10. Ni stands for Nickel foil, Co for Co foil. The position of both metallic and geological age standards is given by the first number giving the disk/plate number and the second the number of the individual hole. Coordinates and an evaluation of the data are given in the Supporting Information of the related article.
description: Supplement to: Rutte, Daniel; Pfänder, Jörg A; Koleška, Michal; Jonckheere, Raymond; Unterricker, Sepp (2015): Radial fast-neutron fluence gradients during rotating 40Ar/39Ar sample irradiation recorded with metallic fluence monitors and geological age standards. Geochemistry, Geophysics, Geosystems, 16(1), 336-345
DOI: 10.1594/pangaea.843015
title: Model experiment on heterotrophic denitrification vs. autotrophic anammox - quantifying collateral effects on the oceanic carbon cycle

description: The conversion of fixed nitrogen to N2 in suboxic waters is estimated to contribute roughly a third to total oceanic losses of fixed nitrogen and is hence understood to be of major importance to global oceanic production and, therefore, to the role of the ocean as a sink of atmospheric CO2. At present heterotrophic denitrification and autotrophic anammox are considered the dominant sinks of fixed nitrogen. Recently, it has been suggested that the trophic nature of pelagic N2-production may have additional, "collateral" effects on the carbon cycle, where heterotrophic denitrification provides a shallow source of CO2 and autotrophic anammox a shallow sink. Here, we analyse the stoichiometries of nitrogen and associated carbon conversions in marine oxygen minimum zones (OMZ) focusing on heterotrophic denitrification, autotrophic anammox, and dissimilatory nitrate reduction to nitrite and ammonium in order to test this hypothesis quantitatively. For open ocean OMZs the combined effects of these processes turn out to be clearly heterotrophic, even with high shares of the autotrophic anammox reaction in total N2-production and including various combinations of dissimilatory processes which provide the substrates to anammox. In such systems, the degree of heterotrophy (deltaCO2:deltaN2), varying between 1.7 and 6.5, is a function of the efficiency of nitrogen conversion. On the contrary, in systems like the Black Sea, where suboxic N-conversions are supported by diffusive fluxes of NH4+ originating from neighbouring waters with sulphate reduction, much lower values of Delta CO2:Delta N2 can be found. However, accounting for concomitant diffusive fluxes of CO2, the ratio approaches higher values similar to those computed for open ocean OMZs. Based on this analysis, we question the significance of collateral effects concerning the trophic nature of suboxic N-conversions on the marine carbon cycle.
description: Please note that this data set does not show data from observations or experimentation but instead output from a theoretical work generated by a numerical model! Read the publication for essential details necessary to understand what the numbers in this data set mean!The data are organized according to the figures in the publication.
description: Supplement to: Koeve, Wolfgang; Kähler, Paul (2010): Heterotrophic denitrification vs. autotrophic anammox – quantifying collateral effects on the oceanic carbon cycle. Biogeosciences, 7(8), 2327-2337
DOI: 10.1594/pangaea.748073
title: Hydrography on standard level calculated from water bottle samples of RV Coriolis in 1979
DOI: 10.1594/pangaea.811522
title: Bulk sediment characteristics and geomicrobiology of sediment core 5022-1D from Laguna Potrok Aike, southern Patagonia
DOI: 10.1594/pangaea.718389
title: Radiosonde measurements from station Boulder, SURFRAD (1998-03)

description: Start location: Denver, CO; Distance from radiation site: 40 km; If launch time is exactly 00Z or 12Z, the actual launch time is likely unknown; Version 2, 2009-06-12
DOI: 10.1594/pangaea.498348
title: Physical oceanography from BT during cruise U909900809B_1901
DOI: 10.1594/pangaea.741476
title: Lithology of sediment core LEMPS85, Le Grand Lemps, France

description: This dataset was archived on 2010-05-11 from the EPD database.
DOI: 10.1594/pangaea.918303
title: Experiment on survival and feeding rates of juveniles and adults crab Hemigrapsus takanoi from Kiel fjord under different salinity levels for a period of 17 days

description: Crabs were collected from inner Kiel Fjord by scraping in November 2018, in order to study their tolerance to salinity and consequently their ability to establish a population along the Baltic Sea, in addition, their feeding rates were estimated under laboratory condition. Experiments were conducted in constant climate temperature room (~12 °C) at GEOMAR during December 2018.
description: sampling location: 10°14.8′E, 54°32.9′N
DOI: 10.1594/pangaea.741352
title: Lithology of sediment core GORNO61, Gorno, Poland

description: This dataset was archived on 2010-05-11 from the EPD database.
DOI: 10.1594/pangaea.741056
title: Tephar layer of sediment core FALSP, The Mire, United Kingdom

description: This dataset was archived on 2010-05-11 from the EPD database.
DOI: 10.1594/pangaea.741384
title: Lithology of sediment core HOPSTOP, Hopschensee, Switzerland

description: This dataset was archived on 2010-05-11 from the EPD database.
DOI: 10.1594/pangaea.744841
title: (Table 1) Stable oxygen and carbon isotope composition of Neogloboquadrina pachyderma of ODP Site 105-645
DOI: 10.1594/pangaea.778002
title: Carbonate analysis from IODP Hole 317-U1351A

description: Geocode = Top depth CSF-A (m).Introduction to shipboard organic geochemistry on the JOIDES Resolution; ODP Technical Note 30: http://www-odp.tamu.edu/publications/tnotes/tn30/TNOTE_30.PDF
DOI: 10.1594/pangaea.741533
title: Lithology of sediment core LUXRODEN, Rodenbourg Bretzboesh, Luxembourg

description: This dataset was archived on 2010-05-11 from the EPD database.
DOI: 10.1594/pangaea.744097
title: Physical oceanography during Anton Dohrn cruise AD_02_1980 to the North Sea
DOI: 10.1594/pangaea.741277
title: Lithology of sediment core DOVJOK, Dovjok Swamp, Ukraine

description: This dataset was archived on 2010-05-11 from the EPD database.
DOI: 10.1594/pangaea.496361
title: Water temperature MBT profiles from cruise U90X120060M_1982
DOI: 10.1594/pangaea.811790
title: Carbon and oxygen isotope measurements on Neogloboquadrina dutertrei, Cibicides wuellerstorfi, and Uvigerina hispida in core P7, Panama Basin, Eastern Equatorial Pacific

description: Depth corrected +0.08 m.Measured at CARBO KIEL Massenspectrometer MAT 251, Christian-Albrechts-University, Kiel, Germany.
DOI: 10.1594/pangaea.615239
title: Monthly relationship between fishing effort and catch of Loxechinus albus in 1994, Region X, Chile
DOI: 10.1594/pangaea.890448
title: Age determination of La_Grande_coreL3T1C2 peat core
DOI: 10.1594/pangaea.719482
title: Ultra-violet measurements from station Bondville (2001-02)

description: Version 2, 2009-06-15. UV-b values were originally given in mW/m² and then erroneously imported in W/m² using the same numbers. The numbers have been corrected (divided by 1000) on 2017-02-09.
DOI: 10.1594/pangaea.741419
title: Lithology of sediment core KARU, Lake Karujarv, Estonia

description: This dataset was archived on 2010-05-11 from the EPD database.
DOI: 10.1594/pangaea.783378
title: Growth increments of the recent brachiopod Magellania venosa mechanically marked in the Paso Comau, Chile, at station Liliguapi, 2011/2012

description: This dataset was generated in the frame of the co-operation between the Huinay Scientific Field Station (http://www.huinay.cl) and the Alfred Wegener Institute, Helmholtz Center for Polar and Marine Research (http://www.awi.de).
DOI: 10.1594/pangaea.547836
title: Nutrients measured on water bottle samples at station Bm_1997-08-31_5, Bajo Molle, Chile
DOI: 10.1594/pangaea.841214
title: (Table 1) Mg/Ca paleotemperature estimates for ODP Sites 172-1055 and 172-1059
DOI: 10.1594/pangaea.918305
title: Kiel fjord salinity at different depths during POLARFUCHS cruises from 2005 to 2018

description: Salinity in Kiel Fjord was recorded on mostly-weekly cruises of the research vessel FK Polarfuchs from 2005 to 2018 using a CTD48M probe (Sea and Sun technologies, Trappenkamp, Germany) at a station in front of the GEOMAR Pier (“Wittlingskuhle”, Position: 54°19'69 N, 10°09'06 E). These measurements are important for better understanding the salinity as one of the important abiotic factor determine the reproduction, establishment and has an effect on many species in the Baltic Sea in general and the fjord specifically.
DOI: 10.1594/pangaea.740106
title: Age determination of sediment core FOURNEAU, Le Fourneau, France

description: This dataset was archived on 2010-05-11 from the EPD database (http://www.europeanpollendatabase.net).
DOI: 10.1594/pangaea.890383
title: Age determination of Mariana_coreMF03-2 peat core
DOI: 10.1594/pangaea.741853
title: Lithology of sediment core ZENEGGEN, Mittlere Hellelen, Switzerland

description: This dataset was archived on 2010-05-11 from the EPD database.
DOI: 10.1594/pangaea.922309
title: Carbon and oxygen isotope literature data for foraminifera from ODP Site Millville (Leg 174AX)
DOI: 10.1594/pangaea.740360
title: Age determination of sediment core GALDANA, Cala Galdana, Spain

description: This dataset was archived on 2010-05-11 from the EPD database (http://www.europeanpollendatabase.net).
DOI: 10.1594/pangaea.847701
title: Phytogeography of New Guinean orchids: richness, turnover, collection density

description: The aims of this study were (1) to assess the spatial distribution of orchid species richness in New Guinea, and (2) to examine patterns of species turnover in the orchid community through phytogeographical regionalization. We aimed to achieve these goals using botanical collection records, species distribution models (SDMs) and partitioning around medoids (PAM) clustering.
description: The zip file contains the following files: 1) Modelled relative species richness of orchids across the study area 2) Modelled phytogeographical regions of New Guinean orchids 3) Kernel-smoothed relative collection density of modelled orchids across the study area
description: Supplement to: Vollering, Julien; Schuiteman, André; de Vogel, Ed; van Vugt, Rogier; Raes, Niels (2016): Phytogeography of New Guinean orchids: patterns of species richness and turnover. Journal of Biogeography, 43(1), 204-214
DOI: 10.1594/pangaea.871554
title: Precipitation measurements in Cartagena, Colombia from August- December 1808, digitized version

description: Source: Observaciones de la cantidad de lluvia hechas en Cartagena de Indias, por D. Manuel Rodriguez Torices. Semanario de la Nueva Granada 1849; 1 line of king foot is 1.935 mm---The data of this dataset might have been revised during the review process. This might therefore be an old version. To be sure, please check the respective dataset at doi:10.1594/PANGAEA.871480
DOI: 10.1594/pangaea.932766
title: Planktic foraminiferal I/Ca ratios from iodine stabalization experiments
DOI: 10.1594/pangaea.886420
title: Physical oceanography from mooring KPO_0888

description: instrument = Label:kpo_0888_01, File:kpo_0888_instr_01.nc, Type:Sontek Argonaut, SN:141 depth/pressure data was derived not measuredinstrument = Label:kpo_0888_02, File:kpo_0888_instr_02.nc, Type:GEOMAR, TD-Logger, SN:03instrument = Label:kpo_0888_03, File:kpo_0888_instr_03.nc, Type:FSI ACM, SN:1374 depth/pressure data was derived not measuredinstrument = Label:kpo_0888_04, File:kpo_0888_instr_04.nc, Type:FSI ACM, SN:1376 depth/pressure data was derived not measuredinstrument = Label:kpo_0888_05, File:kpo_0888_instr_05.nc, Type:GEOMAR, TD-Logger, SN:16
DOI: 10.1594/pangaea.918295
title: Experiment on survival and developmental time of the crab Hemigrapsus takanoi larvae from Kiel Fjord in 8 salinity levels

description: Ovigerous females were collected by scraping from inner Kiel Fjord in July -August 2017 and kept under control constant temperature room (~20°C) until egg hatching. Newly hatched larvae were reared under different salinity treatments in order to estimate their salinity tolerance,. Experiments were conducted until larvae reached the megalopae stage (last larval stage) or died, The results of such study could give us a primary outlook on the dispersal ability of H. takanoi larvae along the Baltic Sea, and insights about the life cycle of H. takanoi specifically in the south-western Baltic.
DOI: 10.1594/pangaea.741293
title: Lithology of sediment core EGGEN, Eggen ob Blatten, Switzerland

description: This dataset was archived on 2010-05-11 from the EPD database.
DOI: 10.1594/pangaea.839144
title: Pollen profile CHABANNE

description: This dataset was archived on 2014-11-03 from the EPD database (http://www.europeanpollendatabase.net).
DOI: 10.1594/pangaea.871561
title: Precipitation measurements in Guatemala city, Guatemala from 1856-1864 and from 1880-1882, digitized version

description: The data of this dataset might have been revised during the review process. This might therefore be an old version. To be sure, please check the respective dataset at doi:10.1594/PANGAEA.871480
DOI: 10.1594/pangaea.498629
title: Physical oceanography from BT during cruise U90VD08124B_1989
DOI: 10.1594/pangaea.871497
title: Sedimentation rates of IODP Site 339-U1389
DOI: 10.1594/pangaea.845190
title: Station list and links to master tracks in different resolutions of HEINCKE cruise HE242/2, Bremerhaven - Bremerhaven, 2005-11-01 - 2005-11-14
DOI: 10.1594/pangaea.869431
title: Station list and links to master tracks in different resolutions of HEINCKE cruise HE474, Bremerhaven - Bremerhaven, 2016-10-12 - 2016-10-20
DOI: 10.1594/pangaea.932763
title: Planktic foraminiferal I/Ca, Fe/Ca, Al/Ca and Mg/Ca ratios in core top samples from cleaning experiments
DOI: 10.1594/pangaea.740628
title: Age determination of sediment core OBERAAR, Oberaar, Switzerland

description: This dataset was archived on 2010-05-11 from the EPD database (http://www.europeanpollendatabase.net).
DOI: 10.1594/pangaea.881334
title: Documentation of sediment core K7905-020GC
DOI: 10.1594/pangaea.548297
title: Physical oceanography at CTD station Bm_1997-09-02_6, Bajo Molle, Chile
DOI: 10.1594/pangaea.741720
title: Lithology of sediment core SHEPET1, Shepeta Bog, Lithuania

description: This dataset was archived on 2010-05-11 from the EPD database.
DOI: 10.1594/pangaea.741723
title: Lithology of sediment core SIONASCA, Loch Sionascaig, United Kingdom

description: This dataset was archived on 2010-05-11 from the EPD database.
DOI: 10.1594/pangaea.741763
title: Lithology of sediment core STYG, Styggtjärnen, Sweden

description: This dataset was archived on 2010-05-11 from the EPD database.
DOI: 10.1594/pangaea.782720
title: Thermal conductivity of IODP Hole 316-C0007D

description: Geocode = [m CSF-A] Top Core depth (below sea floor)
DOI: 10.1594/pangaea.741703
title: Lithology of sediment core SARKIKAN, Särkikangas, Finland

description: This dataset was archived on 2010-05-11 from the EPD database.
DOI: 10.1594/pangaea.741298
title: Lithology of sediment core EGR2G, Etang de la Gruère, Switzerland

description: This dataset was archived on 2010-05-11 from the EPD database.
DOI: 10.1594/pangaea.870201
title: Links to master tracks in different resolutions from POLAR 2 flight EPICA_VII_18
DOI: 10.1594/pangaea.741733
title: Lithology of sediment core SLOP1_N, Slopiec, Poland

description: This dataset was archived on 2010-05-11 from the EPD database.
DOI: 10.1594/pangaea.741097
title: Loss on ignition on sediment samples of core STEKLIN, Steklin, Poland

description: This dataset was archived on 2010-05-11 from the EPD database.
DOI: 10.1594/pangaea.741734
title: Lithology of sediment core SLOP2_N, Slopiec, Poland

description: This dataset was archived on 2010-05-11 from the EPD database.
DOI: 10.1594/pangaea.741509
title: Lithology of sediment core LONSP, Long Lough, United Kingdom

description: This dataset was archived on 2010-05-11 from the EPD database.
DOI: 10.1594/pangaea.741791
title: Lithology of sediment core TONDII, Tondi, Estonia

description: This dataset was archived on 2010-05-11 from the EPD database.
DOI: 10.1594/pangaea.547861
title: Nutrients measured on water bottle samples at station Bm_1997-09-06_5, Bajo Molle, Chile
DOI: 10.1594/pangaea.838633
title: Lithology of sediment core KALIST, Russia

description: This dataset was archived on 2014-11-03 from the EPD database (http://www.europeanpollendatabase.net).
DOI: 10.1594/pangaea.747140
title: Meteorological observations during WARREN cruise from Bombay to Bengall started at 1750-12-01
DOI: 10.1594/pangaea.741539
title: Lithology of sediment core MAKT, Makovich, Ukraine

description: This dataset was archived on 2010-05-11 from the EPD database.
DOI: 10.1594/pangaea.857351
title: Barnacle recurit density, biomass, and reproductive output measured in rocky intertidal habitats in Glasgow Head, on the Atlantic coast of Nova Scotia, Canada

description: Through a field experiment, we show that a predator has negative nonconsumptive effects (NCEs) on different life-history stages of the same prey species. Shortly before the recruitment season of the barnacle Semibalanus balanoides (May–June), we established experimental cages in rocky intertidal habitats in Nova Scotia, Canada. The cages were used to manipulate the presence and absence of dogwhelks, Nucella lapillus, the main predators of barnacles. At the centre of each cage, we installed a tile where barnacle pelagic larvae could settle and the resulting recruits grow. Mesh prevented caged dogwhelks from accessing the tiles, but allowed waterborne dogwhelk cues to reach the tiles. Results in May indicated that barnacle larvae settled preferentially on tiles from cages without dogwhelks. In November, at the end of the dogwhelk activity period and once the barnacle recruits had grown to adult size, barnacle body mass was lower in the presence of dogwhelks. This limitation may have resulted from a lower barnacle feeding activity with nearby dogwhelks, as found by a previous study. The observed larval and adult responses in barnacles are consistent with attempts to decrease predation risk. November data also indicated that dogwhelk cues limited barnacle reproductive output, a possible consequence of the limited growth of barnacles. Overall, this study suggests that a predator species might influence trait evolution in a prey species through NCEs on different life-history stages.
description: Supplement to: Ellrich, Julius A; Scrosati, Ricardo A; Bertolini, Camilla; Molis, Markus (2016): A predator has nonconsumptive effects on different life-history stages of a prey. Marine Biology, 163(1)
DOI: 10.1594/pangaea.881375
title: Documentation of sediment core K7905-091BC