cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14512760
title: Do Large Language Models Contain Software Architectural Knowledge? An Exploratory Case Study with GPT

description: This is the replication package for the ICSA 2025 paper titled "Do Large Language Models Contain Software Architectural Knowledge? An Exploratory Case Study with GPT" by Mohamed Soliman and Jan Keim.

Architectural knowledge (AK) of existing systems is essential for software engineers to make design decisions. Recently, Large Language Models (LLMs) trained on large-scale datasets, including software repositories, have shown promise in embedding knowledge and answering questions. However, LLMs have not been evaluated for their abilities to answer questions about AK, leaving doubts about their accuracy. This paper assesses GPT, a leading LLM, by evaluating its responses' accuracy, quality, and trustworthiness on the AK of the large-scale open-source system HDFS. We conducted an exploratory case study with 14 software engineers who posed questions to GPT and compared its responses to a predefined ground truth. The engineers rated GPT’s answers with moderate quality and trustworthiness. Our findings on GPT´s accuracy indicates moderate recall but lower precision, especially in identifying quality attribute solutions and design rationales. These results suggest that while GPT and similar models can provide initial insights into AK, expert validation remains necessary for reliability. This study underscores LLMs' potential and limitations to discover software AK.
DOI: 10.5281/zenodo.14512761
title: Do Large Language Models Contain Software Architectural Knowledge? An Exploratory Case Study with GPT

description: This is the replication package for the ICSA 2025 paper titled "Do Large Language Models Contain Software Architectural Knowledge? An Exploratory Case Study with GPT" by Mohamed Soliman and Jan Keim.

Architectural knowledge (AK) of existing systems is essential for software engineers to make design decisions. Recently, Large Language Models (LLMs) trained on large-scale datasets, including software repositories, have shown promise in embedding knowledge and answering questions. However, LLMs have not been evaluated for their abilities to answer questions about AK, leaving doubts about their accuracy. This paper assesses GPT, a leading LLM, by evaluating its responses' accuracy, quality, and trustworthiness on the AK of the large-scale open-source system HDFS. We conducted an exploratory case study with 14 software engineers who posed questions to GPT and compared its responses to a predefined ground truth. The engineers rated GPT’s answers with moderate quality and trustworthiness. Our findings on GPT´s accuracy indicates moderate recall but lower precision, especially in identifying quality attribute solutions and design rationales. These results suggest that while GPT and similar models can provide initial insights into AK, expert validation remains necessary for reliability. This study underscores LLMs' potential and limitations to discover software AK.
DOI: 10.6084/m9.figshare.c.3793378_d3.v1
title: Additional file 3: Table S3. of Comparison of molecular serotyping approaches of Streptococcus agalactiae from genomic sequences

description: Investigation of the previously published SNPs using the 10 reference strains. SNPs highlighted in yellow do not correlate with the respective reference and are removed from subsequent analysis. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3793378_d2.v1
title: Additional file 2: Table S2. of Comparison of molecular serotyping approaches of Streptococcus agalactiae from genomic sequences

description: Metadata for all clinical isolates used in this study (nÂ =Â 790). (XLSX 36Â kb)
DOI: 10.15468/dl.7k5x4e
title: Occurrence Download

description: A dataset containing 172 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ammodytes marinus Raitt, 1934",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 172 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038745-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3793402_d2
title: Additional file 2: of 
			                  Clostridium butyricum maximizes growth while minimizing enzyme usage and ATP production: metabolic flux distribution of a strain cultured in glycerol

description: SBML format of iCbu641Genome Scale Metabolic Model. (XML 2250 kb)
DOI: 10.6084/m9.figshare.c.3793396_d4
title: MOESM4 of Effect of user preferences on ITN use: a review of literature and data

description: Additional file 4. Excel tool for cost and utility function calculation. This file provides instructions for calculating mean users per net from DHS and MIS datasets, and an excel-based tool to calculate increases or decreases in ITN users, depending on the cost differentials of different nets and the differentials in mean users per nets of different attributes.
DOI: 10.6084/m9.figshare.c.3793402_d3.v1
title: Additional file 3: of 
			                  Clostridium butyricum maximizes growth while minimizing enzyme usage and ATP production: metabolic flux distribution of a strain cultured in glycerol

description: Proteomic and transcriptomic comparison results. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3793402_d4.v1
title: Additional file 4: of 
			                  Clostridium butyricum maximizes growth while minimizing enzyme usage and ATP production: metabolic flux distribution of a strain cultured in glycerol

description: Results of modeling scenarios with PDO yield increment. (XLSX 5507 kb)
DOI: 10.6084/m9.figshare.c.3793402_d3
title: Additional file 3: of 
			                  Clostridium butyricum maximizes growth while minimizing enzyme usage and ATP production: metabolic flux distribution of a strain cultured in glycerol

description: Proteomic and transcriptomic comparison results. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3793402_d4
title: Additional file 4: of 
			                  Clostridium butyricum maximizes growth while minimizing enzyme usage and ATP production: metabolic flux distribution of a strain cultured in glycerol

description: Results of modeling scenarios with PDO yield increment. (XLSX 5507 kb)
DOI: 10.5281/zenodo.14512756
title: Groschwitz Engel Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope):

https://kalliope-verbund.info/ead?ead.id=DE-611-BF-70963

Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.6084/m9.figshare.c.3794509_d2
title: Additional file 2: Table S2. of Genetic determinants of inherited susceptibility to hypercholesterolemia â   a comprehensive literature review

description: SNVs in the genes with no recognized role in lipid metabolism, identified to be associated with TC, LDL-C and HDL-C levels in GWAS. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3794530_d1.v1
title: Additional file 1: Table S1. of Contrasting impacts of ocean acidification and warming on the molecular responses of CO2-resilient oysters

description: Primers used for qPCR analysis. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3794530_d1
title: Additional file 1: Table S1. of Contrasting impacts of ocean acidification and warming on the molecular responses of CO2-resilient oysters

description: Primers used for qPCR analysis. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3794530_d2.v1
title: Additional file 2: Table S2. of Contrasting impacts of ocean acidification and warming on the molecular responses of CO2-resilient oysters

description: List of proteins identified by mass spectrometry that were differentially regulated by CO2 and/or thermal stress. Fold changes (FC) were calculated from the mean normalised intensities of protein spots relative to the control, ambient condition (aCO2 + aT). FC values &gt;1 reflect up-regulation in the elevated treatment relative to ambient controls. FC values &lt;1 reflect down-regulation in the elevated treatment. The table also shows arbitrarily assigned protein spot numbers, putative identifications (description) and their respective accession numbers based on homology to a Mollusca nr database, spectral counts, log(e) values, isoelectric points (pI) and molecular weights (MW). aCO2 + eT: ambient CO2 and elevated temperature; eCO2 + aT: elevated CO2 and ambient temperature; and eCO2 + eT: elevated CO2 and elevated temperature. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3794557_d1
title: Additional file 1: of Identification of the sequence determinants of protein N-terminal acetylation through a decision tree approach

description: The dataset used in this study. (XLS 101 kb)
DOI: 10.15454/hyrvuh/nsu5qk
title: Rsyst_230218_align_1401seqs_312bp_vf.txt
DOI: 10.15454/hyrvuh/rurdjb
title: Rsyst_230218_align_1401seqs_312bp_vf.fasta
DOI: 10.6084/m9.figshare.c.3794572_d2.v1
title: Additional file 2: of Assessing the effect of patient screening and isolation on curtailing Clostridium difficile infection in hospital settings

description: Matlab code for the model with no delay. (ZIP 2Â kb)
DOI: 10.6084/m9.figshare.c.3794572_d2
title: Additional file 2: of Assessing the effect of patient screening and isolation on curtailing Clostridium difficile infection in hospital settings

description: Matlab code for the model with no delay. (ZIP 2Â kb)
DOI: 10.15468/dl.3hmqh7
title: Occurrence Download

description: A dataset containing 303 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-11.15967 32.28289,1.41701 32.28289,1.41701 41.15461,-11.15967 41.15461,-11.15967 32.28289))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cephalanthera longifolia (L.) Fritsch"
 ]
}

 The dataset includes 303 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038746-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3794587_d1.v1
title: Additional file 1 of Treating lung cancer with dynamic conformal arc therapy: a dosimetric study

description: Supplementary data. (ZIP 4.96 MB)
DOI: 10.6084/m9.figshare.c.3794572_d3.v1
title: Additional file 3: of Assessing the effect of patient screening and isolation on curtailing Clostridium difficile infection in hospital settings

description: Matlab code for the model with delay. (ZIP 4Â kb)
DOI: 10.57754/fdat.px40e-1rs72
title: Lexicalisation paths of collection nouns in French

description: The ressource contains a diachronic analysis (semantic-syntactic annotations) of French collection nouns (random samples per century in corpus Frantext (version 19.3), first attestations until present). The analysis serves to examine possible lexicalisation paths of collection nouns in French.
Analysis_coll_dia_FR_accoutrement: The ressource contains a diachronic analysis (semantic-syntactic annotations) of French accoutrement 'attire' (random samples per century in corpus Frantext (version 19.3), first attestations until present).
Analysis_coll_dia_FR_bétail: The ressource contains a diachronic analysis (semantic-syntactic annotations) of French bétail 'cattle' (random samples per century in corpus Frantext (version 19.3), first attestations until present).
Analysis_coll_dia_FR_équipement: The ressource contains a diachronic analysis (semantic-syntactic annotations) of French équipement 'equipment' (random samples per century in corpus Frantext (version 19.3), first attestations until present).
Analysis_coll_dia_FR_fringues: The ressource contains a diachronic analysis (semantic-syntactic annotations) of French fringues 'clothes' (random samples per century in corpus Frantext (version 19.3), first attestations until present).
Analysis_coll_dia_FR_gens: The ressource contains a diachronic analysis (semantic-syntactic annotations) of French gens 'people' (random samples per century in corpus Frantext (version 19.3), first attestations until present).
Analysis_coll_dia_FR_habillement: The ressource contains a diachronic analysis (semantic-syntactic annotations) of French habillement 'clothing' (random samples per century in corpus Frantext (version 19.3), first attestations until present).
Analysis_coll_dia_FR_mercerie: The ressource contains a diachronic analysis (semantic-syntactic annotations) of French mercerie 'haberdashery' (random samples per century in corpus Frantext (version 19.3), first attestations until present).
Analysis_coll_dia_FR_mobilier: The ressource contains a diachronic analysis (semantic-syntactic annotations) of French mobilier 'furniture' (random samples per century in corpus Frantext (version 19.3), first attestations until present).
Analysis_coll_dia_FR_vaisselle: The ressource contains a diachronic analysis (semantic-syntactic annotations) of French vaisselle 'dishes' (random samples per century in corpus Frantext (version 19.3), first attestations until present).
Analysis_coll_dia_FR_vêtement: The ressource contains a diachronic analysis (semantic-syntactic annotations) of French vêtement '(piece of) clothing' (random samples per century in corpus Frantext (version 19.3), first attestations until present).
Analysis_coll_dia_FR_volaille: The ressource contains a diachronic analysis (semantic-syntactic annotations) of French volaille 'poultry' (random samples per century in corpus Frantext (version 19.3), first attestations until present).
Original source: frantext corpus, version 19.3.
description: Research carried out in work package C07 of the SFB 833.
DOI: 10.15468/dl.4vjfej
title: Occurrence Download

description: A dataset containing 879 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ammodytes personatus Girard, 1856",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 879 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038747-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3794611_d3
title: Additional file 3: Table S2. of ZAR1 is a novel epigenetically inactivated tumour suppressor in lung cancer

description: Supplemental Table 2. (XLSX 13Â kb)
DOI: 10.15468/dl.ypqz9u
title: Occurrence Download

description: A dataset containing 2360538 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "Country is France",
 "Geometry POLYGON((5.80239 43.25311,5.77863 43.02077,6.28711 42.96168,6.71956 43.19771,7.15677 43.54316,7.43239 43.69797,7.3326 43.96879,6.97143 44.09861,6.577 44.0713,6.40116 43.92431,5.81318 43.46623,5.80239 43.25311))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year 2014-2024"
 ]
}

 The dataset includes 2360538 records from 804 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038736-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3794686_d1.v1
title: MOESM1 of Meristem culture and subsequent micropropagation of Chilean strawberry (Fragaria chiloensis (L.) Duch.)

description: Additional file 1. Raw data.
DOI: 10.15468/dl.xdbjzw
title: Occurrence Download

description: A dataset containing 933067 records in GBIF matching the query:
SELECT COUNT(*) as cnt, taxonRank, scientificName, identificationQualifier, specificEpithet, infraspecificEpithet FROM occurrence WHERE identificationQualifier IS NOT NULL GROUP BY taxonRank, scientificName, identificationQualifier, specificEpithet, infraspecificEpithet

 The dataset's 933067 records were derived from 3092 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038735-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.afttgg
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jamesbrittenia major (Pilg.) Hilliard"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256454-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7bhrux
title: Occurrence Download

description: A dataset containing 3463 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eudyptes schlegeli Finsch, 1876",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 3463 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028766-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.37x3mx
title: Occurrence Download

description: A dataset containing 58352 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Meetnetten.be - Transects for butterflies in Flanders, Belgium"
 ]
}

 The dataset includes 58352 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007770-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.etpgt7
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pimelodus grosskopfii Steindachner, 1879"
 ]
}

 The dataset's 3 records were derived from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256856-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hvnndz
title: Occurrence Download

description: A dataset listing the 4 species recorded in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alopias Rafinesque, 1810",
 "Year 2021-2023"
 ]
}

 The dataset's 4 records were derived from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256449-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/7w9554zbf6.1
title: Data Related to the Catalytic Capabilities of Transition Metal Oxides for Energy Applications.

description: Complex periodic systems can be studied using density functional theory (DFT). Problems in materials processing and design can be greatly helped by this. This part uses structural data from Materials Project and DFT methods in BIOVIA Materials Studio to provide light on the underlying physics and chemistry of new transition metal oxide electrocatalysts. Here, the basic chemistry and physics of new transition metal oxide electrocatalysts are explored using density-functional theory (DFT) methods in BIOVIA Materials Studio, in conjunction with structural data from Materials Project. In order to optimize the geometry and conduct electronic structural analysis on the CoWO4, Co3WO8, and TiWO4 structures, the CASTEP and Dmol3 modules were utilized. Using the Adsorption Locator module, H2 and O2 adsorption on the surfaces of CoWO4, Co3WO8, and TiWO4 was investigated.
DOI: 10.15468/dl.gxbyob
title: Occurrence Download

description: A dataset containing 451 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 {
 "or" : [
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84"
 ]
 },
 "Year 1900-2018",
 "TaxonKey is Trachycarpus fortunei (Hook.) H.Wendl."
 ]
}

 The dataset includes 451 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041999-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4zreex
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Oecobius putus O.Pickard-Cambridge, 1876)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 55 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044825-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tat6rm
title: Occurrence Download

description: A dataset containing 2074 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Petrophassa rufipennis Collett, 1898"
 ]
}

 The dataset includes 2074 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002986-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.csated
title: Occurrence Download

description: A dataset containing 406 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Conyza canadensis (L.) Cronquist"
 ]
}

 The dataset includes 406 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197617-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eaq99u
title: Occurrence Download

description: A dataset containing 1074 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atlapetes albofrenatus (Boissonneau, 1840)"
 ]
}

 The dataset includes 1074 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042000-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.