cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.nst935
title: Occurrence Download

description: A dataset containing 18256 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-17.22656 30.75128,39.02344 30.75128,42.73682 40.31982,32.51953 45.08904,28.94897 45.69214,27.97119 47.35107,27.41089 48.39478,24.3457 48.42773,24.87305 52.11914,26.98242 54.05273,30.84961 59.85352,41.48438 77.46603,-17.22656 61.27023,-17.22656 30.75128))",
 "HasCoordinate is true",
 "TaxonKey is Cydalima perspectalis (Walker, 1859)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 18256 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066596-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v02zid
title: Occurrence Download

description: A dataset containing 18959 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Amazilia beryllina (Deppe, 1830)"
 ]
}

 The dataset includes 18959 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002390-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u348np
title: Occurrence Download

description: A dataset containing 210717 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pycnonotus sinensis (Gmelin, 1789)"
 ]
}

 The dataset includes 210717 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035892-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tcqdkg
title: Occurrence Download

description: A dataset containing 860 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Oxyrhopus petolarius (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 860 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066615-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jffnad
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-92.66602 -59.00391,-67.70508 -58.38867,-71.04492 -44.85351,-63.33984 -5.12695,-94.43848 -5.21484,-92.66602 -59.00391))",
 "HasCoordinate is true",
 "TaxonKey is Lontra felina (Molina, 1782)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 73 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002390-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.iydpwj
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eugenia subundulata Kiaersk."
 ]
}

 The dataset includes 92 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013059-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3cxy5d
title: Occurrence Download

description: A dataset containing 184824 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Apis mellifera Linnaeus, 1758",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 184824 records from 657 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076129-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5z2pkg
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "Geometry MULTIPOLYGON (((-79.88253 -26.34699, -79.90253 -26.34949, -79.90693 -26.34639, -79.90553 -26.34109, -79.90033 -26.33919, -79.88783 -26.33639, -79.88003 -26.33669, -79.87333 -26.33749, -79.86943 -26.34079, -79.87113 -26.34499, -79.88253 -26.34699)), ((-80.07693 -26.26169, -80.08223 -26.26249, -80.09583 -26.26219, -80.09973 -26.26139, -80.09193 -26.25469, -80.08753 -26.25199, -80.08053 -26.25139, -80.07533 -26.25359, -80.07363 -26.25779, -80.07693 -26.26169)))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038575-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cvt2mz
title: Occurrence Download

description: A dataset containing 2312 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Anthocharis cardamines (Linnaeus, 1758)",
 "Year 1970-2000"
 ]
}

 The dataset includes 2312 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046222-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zmdxnv
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "HasCoordinate is true",
 "TaxonKey is Cereus hexagonus (L.) Mill.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 41 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039221-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zranm2
title: Occurrence Download

description: A dataset containing 111683661 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-14.41406 33.72434,50.97656 33.72434,50.97656 72.1818,-14.41406 72.1818,-14.41406 33.72434))",
 "HasCoordinate is true",
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 111683661 records from 1388 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002494-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15159342
title: Table 1 in Complex geohistory of continental islands advanced allopatric evolution even for the highly dispersive generalist red fox % Vulpes vulpes): multiple phylogenetic groups in the Japanese Archipelago

description: Table 1. Divergence time between each major intraspecific clade and its sister clade in the red fox* estimated based on the 1098 bp mtDNA cytb gene. Median is shown at the upper and 95% HPD is denoted in the lower bracket. The clock rate is the value per site/million-years used in each scenario.
ScenarioDivergence time (Ma)Clock ratePalearcticNearcticMiddle EastHondoHNa/HNbHokkaido IaHokkaido IIScenario 1 0.01551.123 (1.566–0.755)0.693 (0.977–0.465)0.575 (0.800–0.392)0.189 (0.289–0.106)0.148 (0.236–0.080)0.151 (0.243–0.080)0.142 (0.278–0.045)Scenario 2 0.02800.658 (0.927–0.448)0.403 (0.561–0.270)0.331 (0.459–0.228)0.103 (0.156–0.060)0.081 (0.127–0.045)0.085 (0.134–0.045)0.078 (0.145–0.026)Scenario 3 0.29870.379 (0.600–0.212)0.235 (0.374–0.134)0.193 (0.304–0.107)0.054 (0.092–0.025)0.042 (0.074–0.019)0.045 (0.078–0.020)0.065 (0.120–0.027)
description: Published as part of Watanabe & Yamazaki, Yuji, 2024, Complex geohistory of continental islands advanced allopatric evolution even for the highly dispersive generalist red fox % Vulpes vulpes): multiple phylogenetic groups in the Japanese Archipelago, pp. 8 in Zoological Journal of the Linnean Society 202 (3) on page 8, DOI: 10.1093/zoolinnean/zlae007, http://zenodo.org/record/14423471
DOI: 10.5281/zenodo.15159341
title: Table 1 in Complex geohistory of continental islands advanced allopatric evolution even for the highly dispersive generalist red fox % Vulpes vulpes): multiple phylogenetic groups in the Japanese Archipelago

description: Table 1. Divergence time between each major intraspecific clade and its sister clade in the red fox* estimated based on the 1098 bp mtDNA cytb gene. Median is shown at the upper and 95% HPD is denoted in the lower bracket. The clock rate is the value per site/million-years used in each scenario.
ScenarioDivergence time (Ma)Clock ratePalearcticNearcticMiddle EastHondoHNa/HNbHokkaido IaHokkaido IIScenario 1 0.01551.123 (1.566–0.755)0.693 (0.977–0.465)0.575 (0.800–0.392)0.189 (0.289–0.106)0.148 (0.236–0.080)0.151 (0.243–0.080)0.142 (0.278–0.045)Scenario 2 0.02800.658 (0.927–0.448)0.403 (0.561–0.270)0.331 (0.459–0.228)0.103 (0.156–0.060)0.081 (0.127–0.045)0.085 (0.134–0.045)0.078 (0.145–0.026)Scenario 3 0.29870.379 (0.600–0.212)0.235 (0.374–0.134)0.193 (0.304–0.107)0.054 (0.092–0.025)0.042 (0.074–0.019)0.045 (0.078–0.020)0.065 (0.120–0.027)
description: Published as part of Watanabe & Yamazaki, Yuji, 2024, Complex geohistory of continental islands advanced allopatric evolution even for the highly dispersive generalist red fox % Vulpes vulpes): multiple phylogenetic groups in the Japanese Archipelago, pp. 8 in Zoological Journal of the Linnean Society 202 (3) on page 8, DOI: 10.1093/zoolinnean/zlae007, http://zenodo.org/record/14423471
DOI: 10.5281/zenodo.15159343
title: Table 2 in Complex geohistory of continental islands advanced allopatric evolution even for the highly dispersive generalist red fox % Vulpes vulpes): multiple phylogenetic groups in the Japanese Archipelago

description: Table 2. tMRCA for each clade of the red fox in the Japanese Archipelago* estimated based on the 1098 bp mtDNA cytb gene. Median is shown at the upper and 95% HPD is denoted in the lower bracket. The clock rate is the value per site/million-years used in each scenario.
ScenariotMRCA (Ma)Clock rateHondoHNaHNbHokkaido IaHokkaido IIScenario 1 0.01550.148 (0.236–0.080)0.083 (0.147–0.034)0.087 (0.155–0.034)0.065 (0.129–0.020)0.054 (0.133–0.008)Scenario 2 0.02800.081 (0.127–0.045)0.045 (0.078–0.019)0.048 (0.083–0.019)0.036 (0.071–0.012)0.030 (0.072–0.005)Scenario 3 0.29870.042 (0.074–0.019)0.022 (0.041–0.008)0.024 (0.047–0.008)0.019 (0.041–0.005)0.016 (0.040–0.002)
description: Published as part of Watanabe & Yamazaki, Yuji, 2024, Complex geohistory of continental islands advanced allopatric evolution even for the highly dispersive generalist red fox % Vulpes vulpes): multiple phylogenetic groups in the Japanese Archipelago, pp. 8 in Zoological Journal of the Linnean Society 202 (3) on page 8, DOI: 10.1093/zoolinnean/zlae007, http://zenodo.org/record/14423471
DOI: 10.5281/zenodo.15159344
title: Table 2 in Complex geohistory of continental islands advanced allopatric evolution even for the highly dispersive generalist red fox % Vulpes vulpes): multiple phylogenetic groups in the Japanese Archipelago

description: Table 2. tMRCA for each clade of the red fox in the Japanese Archipelago* estimated based on the 1098 bp mtDNA cytb gene. Median is shown at the upper and 95% HPD is denoted in the lower bracket. The clock rate is the value per site/million-years used in each scenario.
ScenariotMRCA (Ma)Clock rateHondoHNaHNbHokkaido IaHokkaido IIScenario 1 0.01550.148 (0.236–0.080)0.083 (0.147–0.034)0.087 (0.155–0.034)0.065 (0.129–0.020)0.054 (0.133–0.008)Scenario 2 0.02800.081 (0.127–0.045)0.045 (0.078–0.019)0.048 (0.083–0.019)0.036 (0.071–0.012)0.030 (0.072–0.005)Scenario 3 0.29870.042 (0.074–0.019)0.022 (0.041–0.008)0.024 (0.047–0.008)0.019 (0.041–0.005)0.016 (0.040–0.002)
description: Published as part of Watanabe & Yamazaki, Yuji, 2024, Complex geohistory of continental islands advanced allopatric evolution even for the highly dispersive generalist red fox % Vulpes vulpes): multiple phylogenetic groups in the Japanese Archipelago, pp. 8 in Zoological Journal of the Linnean Society 202 (3) on page 8, DOI: 10.1093/zoolinnean/zlae007, http://zenodo.org/record/14423471
DOI: 10.5281/zenodo.15159348
title: Table 3 in Complex geohistory of continental islands advanced allopatric evolution even for the highly dispersive generalist red fox % Vulpes vulpes): multiple phylogenetic groups in the Japanese Archipelago

description: Table 3. Genetic diversity of the two red fox subspecies in the Japanese Archipelago* based on the mtDNA cytb gene and D-loop region. The number of individuals N * sequence length* number of haplotypes H * number of substitution sites S (of which the number of transversion mutations v)* number of gaps G * haplotype diversity H d * and nucleotide diversity π are shown for the Hondo and Kita red fox populations.
Population (N)SequenceLength (bp)HS (v)GH dπHondo (126)Combined15102125 (1)20.92 ± 0.010.0038 ± 0.0020cytb11401316 (0)00.84 ± 0.020.0030 ± 0.0017D-loop370129 (1)20.84 ± 0.020.0062 ± 0.0038Kita (56)Combined15091760 (3)30.86 ± 0.030.0102 ± 0.0051cytb11401139 (3)00.79 ± 0.040.0074 ± 0.0039D-loop3691221 (0)30.71 ± 0.060.0189 ± 0.0100
description: Published as part of Watanabe & Yamazaki, Yuji, 2024, Complex geohistory of continental islands advanced allopatric evolution even for the highly dispersive generalist red fox % Vulpes vulpes): multiple phylogenetic groups in the Japanese Archipelago, pp. 8 in Zoological Journal of the Linnean Society 202 (3) on page 8, DOI: 10.1093/zoolinnean/zlae007, http://zenodo.org/record/14423471
DOI: 10.5281/zenodo.15159347
title: Table 3 in Complex geohistory of continental islands advanced allopatric evolution even for the highly dispersive generalist red fox % Vulpes vulpes): multiple phylogenetic groups in the Japanese Archipelago

description: Table 3. Genetic diversity of the two red fox subspecies in the Japanese Archipelago* based on the mtDNA cytb gene and D-loop region. The number of individuals N * sequence length* number of haplotypes H * number of substitution sites S (of which the number of transversion mutations v)* number of gaps G * haplotype diversity H d * and nucleotide diversity π are shown for the Hondo and Kita red fox populations.
Population (N)SequenceLength (bp)HS (v)GH dπHondo (126)Combined15102125 (1)20.92 ± 0.010.0038 ± 0.0020cytb11401316 (0)00.84 ± 0.020.0030 ± 0.0017D-loop370129 (1)20.84 ± 0.020.0062 ± 0.0038Kita (56)Combined15091760 (3)30.86 ± 0.030.0102 ± 0.0051cytb11401139 (3)00.79 ± 0.040.0074 ± 0.0039D-loop3691221 (0)30.71 ± 0.060.0189 ± 0.0100
description: Published as part of Watanabe & Yamazaki, Yuji, 2024, Complex geohistory of continental islands advanced allopatric evolution even for the highly dispersive generalist red fox % Vulpes vulpes): multiple phylogenetic groups in the Japanese Archipelago, pp. 8 in Zoological Journal of the Linnean Society 202 (3) on page 8, DOI: 10.1093/zoolinnean/zlae007, http://zenodo.org/record/14423471
DOI: 10.5281/zenodo.15159349
title: Table 4 in Complex geohistory of continental islands advanced allopatric evolution even for the highly dispersive generalist red fox % Vulpes vulpes): multiple phylogenetic groups in the Japanese Archipelago

description: Table 4. Demographic dynamics of the two red fox subspecies in the Japanese Archipelago* computed based on the 1510 bp combined sequence of the mtDNA cytb gene and the D-loop region. The Fu’s F s * Tajima’s D * and parameters of the mismatch distribution under the sudden expansion model are shown for the Hondo and Kita red fox populations. The τ indicates the number of generations after the sudden expansion event* θ 0 indicates the population size before the sudden expansion* θ 1 indicates the population size after the sudden expansion* SSD is the sum of squared deviations* and Rg is the Harpending’s raggedness index. The 95% confidence interval of τ * θ 0 * and θ 1 are shown in bracket.
Population (N)Fu’s F sTajima’s DMismatch distributionF sPDPτθ 0θ 1SSDP (SSD)RgP (Rg)Hondo (126) Kita (56)-1.01 4.480.43 0.910.58 0.500.77 0.769.38 (3.31–14.75) 19.06 (7.25–108.06)0.00 (0.00–3.57) 0.00 (0.00–4.50)10.88 (6.54–52.97) 8.91 (3.53–35.80)0.01 0.070.51 0.050.02 0.050.53 0.20
description: Published as part of Watanabe & Yamazaki, Yuji, 2024, Complex geohistory of continental islands advanced allopatric evolution even for the highly dispersive generalist red fox % Vulpes vulpes): multiple phylogenetic groups in the Japanese Archipelago, pp. 9 in Zoological Journal of the Linnean Society 202 (3) on page 9, DOI: 10.1093/zoolinnean/zlae007, http://zenodo.org/record/14423471
DOI: 10.5281/zenodo.15159350
title: Table 4 in Complex geohistory of continental islands advanced allopatric evolution even for the highly dispersive generalist red fox % Vulpes vulpes): multiple phylogenetic groups in the Japanese Archipelago

description: Table 4. Demographic dynamics of the two red fox subspecies in the Japanese Archipelago* computed based on the 1510 bp combined sequence of the mtDNA cytb gene and the D-loop region. The Fu’s F s * Tajima’s D * and parameters of the mismatch distribution under the sudden expansion model are shown for the Hondo and Kita red fox populations. The τ indicates the number of generations after the sudden expansion event* θ 0 indicates the population size before the sudden expansion* θ 1 indicates the population size after the sudden expansion* SSD is the sum of squared deviations* and Rg is the Harpending’s raggedness index. The 95% confidence interval of τ * θ 0 * and θ 1 are shown in bracket.
Population (N)Fu’s F sTajima’s DMismatch distributionF sPDPτθ 0θ 1SSDP (SSD)RgP (Rg)Hondo (126) Kita (56)-1.01 4.480.43 0.910.58 0.500.77 0.769.38 (3.31–14.75) 19.06 (7.25–108.06)0.00 (0.00–3.57) 0.00 (0.00–4.50)10.88 (6.54–52.97) 8.91 (3.53–35.80)0.01 0.070.51 0.050.02 0.050.53 0.20
description: Published as part of Watanabe & Yamazaki, Yuji, 2024, Complex geohistory of continental islands advanced allopatric evolution even for the highly dispersive generalist red fox % Vulpes vulpes): multiple phylogenetic groups in the Japanese Archipelago, pp. 9 in Zoological Journal of the Linnean Society 202 (3) on page 9, DOI: 10.1093/zoolinnean/zlae007, http://zenodo.org/record/14423471
DOI: 10.5281/zenodo.15159353
title: Table 5 in Complex geohistory of continental islands advanced allopatric evolution even for the highly dispersive generalist red fox % Vulpes vulpes): multiple phylogenetic groups in the Japanese Archipelago

description: Table 5. Population differentiation and genetic distance between each subpopulation within the Hondo red fox population* calculated based on the 1510 bp combined sequence of the mtDNA cytb gene and the D-loop region. Pairwise fixation index F ST and corrected average pairwise differences Pi XY are shown below and above the diagonal* respectively. Bold values are supported by significant difference after Bonferroni correction (P <0.001).
Subpopulation (N)Pairwise F ST / Corrected Pi XYEastern HonshuCentral HonshuWestern HonshuShikokuKyushuEastern Honshu (25)4.081.247.378.31Central Honshu (52)0.571.131.361.77Western Honshu (28)0.290.193.163.49Shikoku (17)0.830.240.391.86Kyushu (4)0.980.250.360.33
description: Published as part of Watanabe & Yamazaki, Yuji, 2024, Complex geohistory of continental islands advanced allopatric evolution even for the highly dispersive generalist red fox % Vulpes vulpes): multiple phylogenetic groups in the Japanese Archipelago, pp. 11 in Zoological Journal of the Linnean Society 202 (3) on page 11, DOI: 10.1093/zoolinnean/zlae007, http://zenodo.org/record/14423471
DOI: 10.5281/zenodo.15159354
title: Table 5 in Complex geohistory of continental islands advanced allopatric evolution even for the highly dispersive generalist red fox % Vulpes vulpes): multiple phylogenetic groups in the Japanese Archipelago

description: Table 5. Population differentiation and genetic distance between each subpopulation within the Hondo red fox population* calculated based on the 1510 bp combined sequence of the mtDNA cytb gene and the D-loop region. Pairwise fixation index F ST and corrected average pairwise differences Pi XY are shown below and above the diagonal* respectively. Bold values are supported by significant difference after Bonferroni correction (P <0.001).
Subpopulation (N)Pairwise F ST / Corrected Pi XYEastern HonshuCentral HonshuWestern HonshuShikokuKyushuEastern Honshu (25)4.081.247.378.31Central Honshu (52)0.571.131.361.77Western Honshu (28)0.290.193.163.49Shikoku (17)0.830.240.391.86Kyushu (4)0.980.250.360.33
description: Published as part of Watanabe & Yamazaki, Yuji, 2024, Complex geohistory of continental islands advanced allopatric evolution even for the highly dispersive generalist red fox % Vulpes vulpes): multiple phylogenetic groups in the Japanese Archipelago, pp. 11 in Zoological Journal of the Linnean Society 202 (3) on page 11, DOI: 10.1093/zoolinnean/zlae007, http://zenodo.org/record/14423471