cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29189678
title: JGRSubmissionDataset.dta

description: Dataset was developed as part of a project examining international responses to genocidal events and armed conflict writ large. Data on battle related deaths was pulled from the UCDP Armed Conflict Dataset, while data on security council resolutions was scraped from the UN website. Data is at the country-year level and is geographically representative but not universal.
DOI: 10.6084/m9.figshare.29189678.v1
title: JGRSubmissionDataset.dta

description: Dataset was developed as part of a project examining international responses to genocidal events and armed conflict writ large. Data on battle related deaths was pulled from the UCDP Armed Conflict Dataset, while data on security council resolutions was scraped from the UN website. Data is at the country-year level and is geographically representative but not universal.
DOI: 10.15468/dl.vw3xaa
title: Occurrence Download

description: A dataset containing 1251 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pteropus hypomelanus Temminck, 1853"
 ]
}

 The dataset includes 1251 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009754-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gn2yte
title: Occurrence Download

description: A dataset containing 114778152 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "OccurrenceStatus is Present",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d"
 ]
}

 The dataset includes 114778152 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009706-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uw2jke
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nyctimene rabori Heaney & Peterson, 1984"
 ]
}

 The dataset includes 120 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009753-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/dnypwy
title: Replication Data for: Papal Correspondence: Gregory VII’s influence network, Urban Self-Government, and the Papal Revolution

description: Replications files for the article "Papal Correspondence: Gregory VII’s influence network, Urban Self-Government, and the Papal Revolution"
DOI: 10.25625/a2z8t8/iufqgy
title: footprint_2021_Wendhausen_AF_90%.tab

description: :unav
DOI: 10.25625/a2z8t8/onmavk
title: footprint_2024_Dornburg_MC_90%.tab

description: :unav
DOI: 10.25625/a2z8t8/klar9u
title: footprint_2024_Vechta_AF_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/88h6fx
title: footprint_2021_Vechta_AF_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/whx0za
title: Forst_MC_precipitation_1h.tab

description: :unav
DOI: 10.25625/a2z8t8/myicfx
title: footprint_2023_Forst_AF_70%.tab

description: :unav
DOI: 10.5061/dryad.p5v8g
title: Data from: Patterns of host plant utilization and diversification in the brush-footed butterflies

description: Herbivorous insects represent one of the most successful animal radiations
 known. They occupy a wide range of niches, feed on a great variety of
 plants, and are species rich; yet the factors that influence their
 diversification are poorly understood. Host breadth is often cited as a
 major factor influencing diversification, and, according to the
 Oscillation Hypothesis, shifts from generalist to specialist feeding
 states increase the diversification rate for a clade. We explored the
 relationship between host breadth and diversification within the
 Nymphalidae (Lepidoptera) and explicitly tested predictions of the
 Oscillation Hypothesis. We found strong evidence of diversification rate
 heterogeneity, but no difference in host breadth between clades with a
 higher diversification rate compared to their sisters. We also found some
 clades exhibited phylogenetic non-independence in host breadth and these
 clades had lower host plant turnover than expected by chance, suggesting
 host breadth is evolutionarily constrained. Finally, we found that
 transitions among host breadth categories varied, but the likelihood of
 reductions in host breadth was greater than that of increases. Our results
 indicate host breadth is de-coupled from diversification rate within the
 Nymphalidae, and that constraints on diet breadth might play an important
 role in the evolution of herbivorous insects.
description: Hamm_Fordyce_DryadcodeThis file contains the R code used to analyze and visualize the data presented in our paperHamm_Fordyce_data_1R data file containing all objects used or generated as part of this researchHamm_Fordyce_DryadZip file with all data in raw form.
DOI: 10.25625/a2z8t8/0pjkyf
title: footprint_2020_Mariensee_MC_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/otsdt3
title: footprint_2020_Dornburg_AF_90%.tab

description: :unav
DOI: 10.25625/a2z8t8/3wcvhu
title: footprint_2022_Dornburg_MC_70%.tab

description: :unav
DOI: 10.5061/dryad.k1j51
title: Data from: Ontogenetic changes in genetic variances of age-dependent plasticity along a latitudinal gradient

description: The expression of phenotypic plasticity may differ among life stages of
 the same organism. Age-dependent plasticity can be important for
 adaptation to heterogeneous environments, but this has only recently been
 recognized. Whether age-dependent plasticity is a common outcome of local
 adaptation and whether populations harbor genetic variation in this
 respect remains largely unknown. To answer these questions, we estimated
 levels of additive genetic variation in age-dependent plasticity in six
 species of damselflies sampled from 18 populations along a latitudinal
 gradient spanning 3600 km. We reared full sib larvae at three temperatures
 and estimated genetic variances in the height and slope of thermal
 reaction norms of body size at three points in time during ontogeny using
 random regression. Our data show that most populations harbor genetic
 variation in growth rate (reaction norm height) in all ontogenetic stages,
 but only some populations and ontogenetic stages were found to harbor
 genetic variation in thermal plasticity (reaction norm slope). Genetic
 variances in reaction norm height differed among species, while genetic
 variances in reaction norm slope differed among populations. The slope of
 the ontogenetic trend in genetic variances of both reaction norm height
 and slope increased with latitude. We propose that differences in genetic
 variances reflect temporal and spatial variation in the strength and
 direction of natural selection on growth trajectories and age-dependent
 plasticity. Selection on age-dependent plasticity may depend on the
 interaction between temperature seasonality and time constraints
 associated with variation in life history traits such as generation
 length.
description: NilssonOrtman2014_Headwidth_Data-1Head widths (”hw”) of larvae of six species of damselflies (”spec”) reared in the laboratory at three or four temperatures ("temp"). Head widths are in the unit of millimeter. Head widths were measured at four different ages (”day”). These measurements were made immediately following hatching (day = 0),and at the age of 42, 84 and 126 days. Different species and populations were reared in three different years (”year”). Each species was sampled from populations at three different latitudes, namely near its southern range limit, at the core of its range and near the northern range limit (”lat”, coded as s, c and n, respectively). At each latitude, between two and four subpopulations were sampled (”pop”). The latitude (”lat”) and longitude (”long”) is given for each subpopulation. For a list of populations and abbreviations, please refer to Table S1 in the published paper. From each subpopulations, full-sib larvae were reared from several families (”fam”), i.e. they were hatched from eggs laid by a single female, and from each family we reared 5 individual larvae (”ind”) at each temperature.
DOI: 10.25625/a2z8t8/a12tkz
title: footprint_2022_Dornburg_AF_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/xq7org
title: footprint_2020_Wendhausen_AF_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/tppuua
title: footprint_2023_Wendhausen_MC_90%.tab

description: :unav
DOI: 10.25625/a2z8t8/0ywflw
title: footprint_2023_Vechta_MC_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/h6td3m
title: Forst_MC_fluxes_30min.tab

description: :unav
DOI: 10.5061/dryad.36pn8
title: Data from: Evolution of equal division among unequal partners.

description: One of the hallmarks of human fairness is its insensitivity to power:
 while strong individuals are often in a position to coerce weak
 individuals, fairness requires them to share the benefits of cooperation
 equally. The existence of such egalitarianism is poorly explained by
 current evolutionary models. We present a model based on cooperation and
 partner choice that can account for the emergence of a psychological
 disposition toward fairness, whatever the balance of power between the
 cooperative partners. We model the evolution of the division of a benefit
 in an interaction similar to an ultimatum game, in a population made up of
 individuals of variable strength. The model shows that strong individuals
 will not receive any advantage from their strength, instead having to
 share the benefits of cooperation equally with weak individuals at the
 evolutionary equilibrium, a result that is robust to variations in
 population size and the proportion of weak individuals. We discuss how
 this model suggests an explanation for why egalitarian behaviors towards
 everyone, including the weak, should be more likely to evolve in humans
 than in any other species.
description: Simulation result files
 and mathematica notebook for analysisData and analysis files
 for paper "Evolution of equal division among unequal partners",
 published in Evolution, 2014, by Stéphane Debove, Nicolas Baumard and
 Jean-Baptiste André. Each folder contains the result files for multiple
 simulations with the same parameter values. These data files can be
 analyzed with the Mathematica notebook "analysis_data.nb"
 provided. If more details are needed on the data or the analysis, please
 contact the first author of the publication (find contact on personal
 website at http://stephanedebove.net ).files_and_analysis.zipNetlogo code for the agent-based simulationsnetlogo_code_curated.nlogo
DOI: 10.25625/a2z8t8/9ugopt
title: Mariensee_AF_precipitation_1h.tab

description: :unav
DOI: 10.25625/a2z8t8/q36id7
title: footprint_Wendhausen_MC_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/vbmpez
title: footprint_2020_Mariensee_AF_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/0zop1a
title: footprint_2023_Dornburg_AF_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/grgc1z
title: footprint_2024_Vechta_MC_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/akb8b9
title: footprint_Forst_MC_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/sysocy
title: footprint_2019_Dornburg_MC_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/iftehc
title: Vechta_MC_meteo_30min.tab

description: :unav
DOI: 10.25625/a2z8t8/dftoc7
title: footprint_2021_Mariensee_AF_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/rtoegc
title: Vechta_MC_fluxes_30min.tab

description: :unav
DOI: 10.25625/a2z8t8/wr3izx
title: footprint_2021_Mariensee_MC_90%.tab

description: :unav
DOI: 10.5061/dryad.n56gp
title: Data from: Influence of mortality factors and host resistance on the population dynamics of emerald ash borer (Coleoptera: Buprestidae) in urban forests

description: The success of emerald ash borer (Agrilus planipennis Fairmaire) in North
 America is hypothesized to be due to both the lack of significant natural
 enemies permitting easy establishment and a population of trees that lack
 the ability to defend themselves, which allows populations to grow
 unchecked. Since its discovery in 2002, a number of studies have examined
 mortality factors of the insect in forests, but none have examined the
 role of natural enemies and other mortality agents in the urban forest.
 This is significant because it is in the urban forest where the emerald
 ash borer has had the most significant economic impacts. We studied
 populations in urban forests in three municipalities in Ontario, Canada,
 between 2010 and 2012 using life tables and stage-specific survivorship to
 analyze data from a split-rearing manipulative experiment. We found that
 there was little overall mortality caused by natural enemies; most
 mortality we did observe was caused by disease. Stage-specific
 survivorship was lowest in small and large larvae, supporting previous
 observations of high mortality in these two stages. We also used our data
 to test the hypothesis that mortality and density in emerald ash borer are
 linked. Our results support the prediction of a negative relationship
 between mortality and density. However, the relationship varies between
 insects developing in the crown and those in the trunk of the tree. This
 relationship was significant because when incorporated with previous
 findings, it suggests a mechanism and hypothesis to explain the outbreak
 dynamics of the emerald ash borer.
description: masterInsectDataage and health of each emerald ash borer larvae collectedmasterBoltBranchDataData from each piece of ash sampled to obtain emerald ash borer larvae.allDataMergeddata from masterBoltBranchData and masterInsectData merged together in one filemergedLiveEabDataderived data set from masterBoltBranchData and masterInsectData. Summarizes total number of life and dead emerald ash borer in each stage, in each piece of wood that was sample where live insects were found.densityDependantMortalityAnalysisRevisedR code to perform the analysis of density dependant mortalityfigureFunctionsA set of R functions to make figures seen in the manuscript, plus some other diagnostic plotslifeTableAnalysisR code to construct and analyse the emerald ash borer life tablesurvivalAnalysisFunctionsA set of R functions to perform the survival analysissurvivalAnalysisRevisedR code to compute and analyze stage specific survivorship
DOI: 10.25625/a2z8t8/p1b4hq
title: footprint_2023_Dornburg_MC_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/hj4jg7
title: footprint_2024_Vechta_AF_90%.tab

description: :unav
DOI: 10.25625/a2z8t8/iruo9z
title: footprint_Forst_AF_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/a4crwa
title: footprint_2019_Vechta_AF_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/ns0nor
title: footprint_2020_Vechta_AF_70%.tab

description: :unav
DOI: 10.5061/dryad.4736q
title: Data from: Phylogenetic distribution of symbiotic bacteria from Panamanian amphibians that inhibit growth of the lethal fungal pathogen Batrachochytrium dendrobatidis

description: The introduction of next-generation sequencing has allowed for greater
 understanding of community composition of symbiotic microbial communities.
 However, determining the function of individual members of these microbial
 communities still largely relies on culture-based methods. Here, we
 present results on the phylogenetic distribution of a defensive functional
 trait of cultured symbiotic bacteria associated with amphibians.
 Amphibians are host to a diverse community of cutaneous bacteria and some
 of these bacteria protect their host from the lethal fungal pathogen
 Batrachochytrium dendrobatidis (Bd) by secreting antifungal metabolites.
 We cultured over 450 bacterial isolates from the skins of Panamanian
 amphibian species and tested their interactions with Bd using an in vitro
 challenge assay. For a subset of isolates, we also completed coculture
 experiments and found that culturing isolates with Bd had no effect on
 inhibitory properties of the bacteria, but it significantly decreased
 metabolite secretion. In challenge assays, approximately 75% of the
 bacterial isolates inhibited Bd to some extent and these inhibitory
 isolates were widely distributed among all bacterial phyla. Although there
 was no clear phylogenetic signal of inhibition, three genera,
 Stenotrophomonas, Aeromonas and Pseudomonas, had a high proportion of
 inhibitory isolates (100%, 77% and 73%, respectively). Overall, our
 results demonstrate that antifungal properties are phylogenetically
 widespread in symbiotic microbial communities of Panamanian amphibians and
 that some functional redundancy for fungal inhibition occurs in these
 communities. We hope that these findings contribute to the discovery and
 development of probiotics for amphibians that can mitigate the threat of
 chytridiomycosis.
description: Bacterial Isolate
 dataThis file includes
 information for each bacterial isolate assayed in the study. Isolate ID,
 16s rRNA sequence, the source and site the isolate was collected from,
 mean Bd inhibition, and taxonomic identification are listed for each
 isolate.Bacterial Isolate
 Data.xlsxIsolate Sequence
 AlignmentAlignment of 16s rRNA
 sequences.Co-culture experiment
 inhibition dataCo-culture experiment
 inhibition data.Co-culture experiment
 metabolite dataNumber of metabolites
 detected for each bacterial isolate.Acinetobacter Isolate
 Sequence AlignmentPseudomonas Isolate
 Sequence Alignment
DOI: 10.25625/a2z8t8/tiyzhv
title: footprint_2021_Wendhausen_MC_90%.tab

description: :unav
DOI: 10.25625/a2z8t8/grnshm
title: footprint_2020_Dornburg_AF_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/vstqwc
title: footprint_2019_Forst_AF_90%.tab

description: :unav
DOI: 10.25625/a2z8t8/clmpvd
title: footprint_2019_Forst_MC_80%.tab

description: :unav
DOI: 10.5061/dryad.j55sn
title: Data from: Dynamics of pre-choice and post-choice behaviour: rats approximate optimal strategy in a discrete-trial decision task

description: We simulate two types of environments to investigate how closely rats
 approximate optimal foraging. Rats initiated a trial where they chose
 between two spouts for sucrose, which was delivered at distinct
 probabilities. The discrete trial procedure used allowed us to observe the
 relationship between choice proportions, response latencies and obtained
 rewards. Our results show that rats approximate the optimal strategy
 across a range of environments that differ in the average probability of
 reward as well as the dynamics of the depletion-renewal cycle. We found
 that the constituent components of a single choice differentially reflect
 environmental contingencies. Post-choice behaviour, measured as the
 duration of time rats spent licking at the spouts on unrewarded trials,
 was the most sensitive index of environmental variables, adjusting most
 rapidly to changes in the environment. These findings have implications
 for the role of confidence in choice outcomes for guiding future choices.
description: Data from: Dynamics of
 pre-choice and post-choice behaviour: rats approximate optimal strategy in
 a discrete-trial decision taskData from: Dynamics of
 pre-choice and post-choice behaviour: rats approximate optimal strategy in
 a discrete-trial decision taskJan2015DataAccess.xlsx
DOI: 10.25625/a2z8t8/nhubmz
title: footprint_2020_Dornburg_MC_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/iww4rp
title: footprint_2022_Vechta_AF_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/kemigx
title: footprint_Wendhausen_MC_90%.tab

description: :unav
DOI: 10.25625/a2z8t8/3qo8cv
title: footprint_2019_Dornburg_AF_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/gr134t
title: footprint_2019_Forst_MC_70%.tab

description: :unav
DOI: 10.5061/dryad.f5s6r
title: Data from: Breeding increases the efficacy of Chondrostereum purpureum in the sprout control of birch

description: We tested whether the pairing of selected isolates could be used to
 increase the efficiency of a decay fungus Chondrostereum purpureum (Pers.
 Ex Fr.) Pouzar to control hardwood sprouting in Finland. We paired C.
 purpureum strains efficient in sprout control or highly active in laccase
 production, and tested the efficacy of their progeny in spout control
 experiments. This procedure resulted in a strain with an efficacy superior
 to that of the parental strains. The mortality of birch (Betula pendula
 Roth. and B. pubescens Ehrh.) 1 cm in stump diameter was 78%, 56% and 9%
 for the best progeny, the best parental strain and the control,
 respectively. Mortality was only slightly higher for B. pendula than for
 B. pubescens but no significant differences were found between the number
 or maximum height of stump sprouts. Our results showed that cross breeding
 of this decay fungus is a good alternative in attempts to produce
 efficient biocontrol agents against hardwood sprouting.
description: Field data
 2009-2013Field data relating to
 the effects of a decay fungus, Chondrostereum purpureum on birch (Betula
 pendula and B. pubescens) sprouting.sproutstop_data.zipFigures 1-4Figures presented in the publication.sproutstop_figures.zip
DOI: 10.25625/a2z8t8/gipd2x
title: footprint_Forst_AF_80%.tab

description: :unav
DOI: 10.25625/a2z8t8/1apttl
title: footprint_2024_Forst_AF_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/zjhclm
title: Mariensee_AF_meteo_30min.tab

description: :unav
DOI: 10.5061/dryad.k4227
title: Data from: A metacalibrated time-tree documents the early rise of flowering plant phylogenetic diversity

description: The establishment of modern terrestrial life is indissociable from
 angiosperm evolution. While available molecular clock estimates of
 angiosperm age range from the Paleozoic to the Late Cretaceous, the fossil
 record is consistent with angiosperm diversification in the Early
 Cretaceous. The time-frame of angiosperm evolution is here estimated using
 a sample representing 87% of families and sequences of five plastid and
 nuclear markers, implementing penalized likelihood and Bayesian relaxed
 clocks. A literature-based review of the palaeontological record yielded
 calibrations for 137 phylogenetic nodes. The angiosperm crown age was
 bound within a confidence interval calculated with a method that considers
 the fossil record of the group. An Early Cretaceous crown angiosperm age
 was estimated with high confidence. Magnoliidae, Monocotyledoneae and
 Eudicotyledoneae diversified synchronously 135–130 million yr ago (Ma);
 Pentapetalae is 126–121 Ma; and Rosidae (123–115 Ma) preceded Asteridae
 (119–110 Ma). Family stem ages are continuously distributed between c. 140
 and 20 Ma. This time-frame documents an early phylogenetic proliferation
 that led to the establishment of major angiosperm lineages, and the origin
 of over half of extant families, in the Cretaceous. While substantial
 amounts of angiosperm morphological and functional diversity have deep
 evolutionary roots, extant species richness was probably acquired later.
description: Magallon_etal_dataNucleotide sequence data.Magallon_etal_PL_100bs100 bootstrap trees obtained with maximum likelihood in RAxML, dated with Penalized Likelihood.Magallon_etal_PL_MLMaximum likelihood tree obtained with RAxML and dated with Penalized Likelihood.Magallon_etal_UCLNDated tree obtained with the uncorrelated lognormal (UCLN) method in BEAST.
DOI: 10.25625/a2z8t8/myuhuj
title: footprint_2023_Dornburg_MC_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/4syeau
title: footprint_2021_Forst_AF_70%.tab

description: :unav
DOI: 10.25625/a2z8t8/nqbmoa
title: footprint_Dornburg_AF_90%.tab

description: :unav
DOI: 10.25625/a2z8t8/efd8v6
title: footprint_2019_Wendhausen_MC_90%.tab

description: :unav