cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1117102.10fu
title: SH1117102.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1117103.10fu
title: SH1117103.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.7910/dvn/hlvnna
title: Replication Data for: Antipeptide Antibody Recognizing Cognate Complement-Activating Nucleocapsid Analogs of Coronaviruses

description: Antipeptide Antibody Recognizing Cognate Complement-Activating Nucleocapsid Analogs of Coronaviruses
DOI: 10.15156/bio/sh1117108.10fu
title: SH1117108.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1117109.10fu
title: SH1117109.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1117111.10fu
title: SH1117111.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.25345/c50z7184r
title: MassIVE MSV000097367 - Overexpression of ATase1 and ATase2 in the mouse disrupts the quality of the secretome and causes a progeria phenotype
title: Acetylation in the lumen of the endoplasmic reticulum requires two acetyltransferases, ATase1/NAT8B and ATase2/NAT8. They are type II membrane proteins and belong to the larger GNAT superfamily of acetyltransferases. Their enzymatic activity is tightly coupled to the import of acetyl-CoA in the lumen of the endoplasmic reticulum by AT-1/SLC33A1. Gene duplication events involving 3q25.31 (harboring AT-1/SLC33A1) and 2p13.1 (harboring ATase1/ NAT8B and ATase2/NAT8) are associated with autism spectrum disorder with intellectual disability and progeria-like dysmorphism. Here, we report the generation and phenotypic characterization of mice with systemic overexpression of ATase1 (ATase1 sTg) and ATase2 (ATase2 sTg). Overexpression of either ATase at conception was found to be lethal while overexpression at birth was found to cause a progeria-like phenotype that included skin alterations, lordokyphosis, reduced bone density, sarcopenia, splenomegaly, adenomegaly, and systemic inflammation. The phenotype of ATase1 sTg mice displayed incomplete penetrance, while the phenotype of ATase2 sTg displayed full penetrance and was more severe. Mechanistically, the phenotype was linked to altered dynamics of the secretory pathway with defects affecting the quality of the secretome.
DOI: 10.15468/dl.qx3hcz
title: Occurrence Download

description: A dataset containing 111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Oceania",
 "Country is Australia",
 "Month is November",
 "TaxonKey is Callistemon R.Br.",
 "Year 2023-2023"
 ]
}

 The dataset includes 111 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016005-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15485/2507048
title: Data and Scripts associated with a manuscript on ecosystem responses to wildfires in the Columbia River Basin

description: This data package is associated with the publication “Ecosystem leaf area, gross primary production, and evapotranspiration responses to wildfire in the Columbia River Basin” submitted to Biogeosciences (Shi et al., 2024; doi: 10.22541/au.171053013.30286044/v1). In this research, data products, leaf area index (LAI), gross primary production (GPP), and evapotranspiration (ET), from the Moderate Resolution Imaging Spectroradiometer (MODIS) are used to quantify the resistance and resilience of different ecosystem types in the Columbia River Basin (CRB). A machine learning algorithm, random forest (RF), was used to examine the impacts of precipitation, vapor pressure deficit (VPD), and burn severity from Monitoring Trends in Burn Severity (MTBS) on ecosystem resilience. The data package includes the processed MODIS data products, precipitation, VPD, and burn severity in 138 fire regions in CRB and the input files for RF model training. This data package includes six folders. The MODIS products are included in three MODIS_* folders with shell scripts for data clipping and *ncl files for data processing: (1) “/MODIS_LAI_CRB”; (2) “/MODIS_GPP_CRB”; and (3) “/MODIS_ET_CRB”. All the processed data for each fire event are NetCDF formatted. The MTBS burn severity data and the shell and *ncl scripts used for data processing are in the folder named (4) “MTBS_fire”. The ERA meteorological fields and the data processing scritps are in (5) “ERA_Var_CR”. All the scripts for figure development are in the format of *ncl and in the folder (6) “paper_scripts”. See the file ending in “flmd.csv” for a list of all files contained in this data package and descriptions for each. Tabular column headers and units are described in the data dictionary file ending in “dd.csv”.
DOI: 10.15468/dl.rjsg3k
title: Occurrence Download

description: A dataset containing 299 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ormosia henryi Prain"
 ]
}

 The dataset includes 299 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016006-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yg82bt
title: Occurrence Download

description: A dataset containing 189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Metaphycus stanleyi Compere, 1940",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 189 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016007-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4tm379
title: Occurrence Download

description: A dataset containing 552177 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "MediaType is Audio"
 ]
}

 The dataset includes 552177 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016004-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c4cdbu
title: Occurrence Download

description: A dataset containing 220 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Oceania",
 "Country is Australia",
 "Month is January",
 "TaxonKey is Casuarina L.",
 "Year 2020-2023"
 ]
}

 The dataset includes 220 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016008-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25584/2530740
title: EVT 16s Data and Large Supplementary Files

description: Soil microorganisms often interact to carry out decomposition of complex organic carbon and nitrogen compounds, such as chitin, but the high diversity and complexity of the soil microbiome and habitat has posed a challenge to elucidating such interactions between soil microorganisms. Here, we seek to address this challenge through analysis of a model soil consortium (MSC-2) of eight soil bacterial species. Our aim was to elucidate specific roles of the member species during chitin metabolism. Samples were collected from MSC-2 incubated in chitin-enriched soil over three months. Multi-omics was used to understand how the community composition, transcripts, proteins and chitin decomposition shifted over time. The data clearly and consistently revealed a temporal shift during chitin decomposition with defined contributions by individual species. A Streptomyces genus member (sp001905665) was a key player in early steps of chitin decomposition, with other MSC-2 members being central in carrying out later steps. These results illustrate how multi-omics applied to a defined consortium untangles interactions between soil microorganisms.
DOI: 10.15468/dl.jfsadb
title: Occurrence Download

description: A dataset containing 552177 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "MediaType is Audio"
 ]
}

 The dataset includes 552177 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016003-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/ds/5458328
title: 🎹 960K Spotify Songs With Lyrics data 🎵
DOI: 10.15468/dl.czye7h
title: Occurrence Download

description: A dataset containing 14652 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Coffea arabica L."
 ]
}

 The dataset includes 14652 records from 540 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016009-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/ad35e56292fd30ed674dc8b9489b5c60
title: Eight Mile Lake Research Watershed, Thaw Gradient: half-hourly soil temperature 2004-2024

description: In this larger study, we are asking the question: Is old carbon that comprises the bulk of the soil organic matter pool released in response to thawing of permafrost? We are answering this question by using a combination of field and laboratory experiments to measure radiocarbon isotope ratios in soil organic matter, soil respiration, and dissolved organic carbon, in tundra ecosystems. The objective of these proposed measurements is to develop a mechanistic understanding of the SOM sources contributing to C losses following permafrost thawing. We are making these measurements at an established tundra field site near Healy, Alaska in the foothills of the Alaska Range. Field measurements center on a natural experiment where permafrost has been observed to warm and thaw over the past several decades. This area represents a gradient of sites each with a different degree of change due to permafrost thawing. As such, this area is unique for addressing questions at the time and spatial scales relevant for change in arctic ecosystems. This data set includes soil temperature at multiple depths in the profile at different locations within gradient of sites described.
DOI: 10.15121/2531105
title: Utah FORGE: Triaxial Direct Shear Results - February 2025

description: This dataset contains results from nine triaxial direct shear tests conducted by Los Alamos National Laboratory on samples from FORGE Well 16A(78)-32. The primary objectives of this work were to determine the shear strength in both intact and residual states, evaluate dilation against displacement, assess permeability in relation to displacement, time, and normal stress, understand the relationship between aperture and normal stress, and monitor the effluent chemistry as a function of time. The data includes time-series measurements of stress, displacement, permeability, and effluent chemistry, with and without experimental dilution corrections. Additional materials include profilometry data, photographic documentation of the experimental setups and apparatus, and test notes. The dataset is organized into folders corresponding to each test, containing hydromechanical data, effluent chemistry measurements, and images. The hydromechanical data consists of detailed time-series records capturing parameters such as shear force, confining pressure, permeability, and temperature. Effluent chemistry data tracks fluid composition changes over time. Also included are conference papers, presentation slides, and a summary document outlining the experiments.
DOI: 10.15121/2531106
title: Utah FORGE: LBNL Reports on VEMP Electromagnetic Data Collection and Processing - 2024

description: This archive contains reports related to Vertical Electromagnetic Profiling (VEMP) tool data collection and processing at Utah FORGE in 2024. The first report describes LBNL's effort to collect electromagnetic geophysical data with the tool in well 78-32B and a downhole electrode in well 16A. The second report describes the final data acquisition and processing of the VEMP electromagnetic data collected at the Utah FORGE site in May of 2024. Also included are a noise analysis as well as a comparison of the data to numerical models. This was originally presented as a paper at the 2025 Stanford Geothermal Workshop.
DOI: 10.15121/2531107
title: Utah FORGE: 16B(78)-32 RFS DSS Strain Change Rate vs. Depth During 16A(78)-32 Stimulation

description: This dataset contains strain change rate versus depth data acquired using a Rayleigh frequency shift (RFS) distributed strain sensing (DSS) system during hydraulic stimulation of well 16A(78)-32 at the Utah FORGE site in April 2024. The data were collected from an optical fiber installed in the annulus of production well 16B(78)-32, approximately 300 feet from the injection well. The dataset includes tabulated strain data and an explanation of the methodology used to generate the frac log, which integrates strain change rate signals over selected time windows to identify fracture events.
DOI: 10.15121/2531108
title: Utah FORGE: Well 16B(78)-32 DTS, RFS DSS Strain, and Absolute Strain Circulation Test Fiber Optic Data - August 2024

description: This dataset contains processed fiber optic measurements collected during the extended cross-well circulation test at the Utah FORGE site in August 2024. The data was acquired from the 16B(78)-32 well using distributed fiber optic sensing (DFOS) technology, including distributed temperature sensing (DTS) on multimode fiber and distributed strain sensing (DSS) measurements on single-mode fiber. The dataset includes Brillouin absolute strain, Rayleigh frequency shift (RFS) DSS strain change, RFS DSS strain change rate, and temperature (DTS) data, all stored in HDF5 format. Time coordinates are provided in UTC, and depth measurements are given in measured depth relative to the rotary kelly bushing (MD RKB) in feet. The spatial sampling on the RFS DSS strain data and the Brillouin Absolute Total Strain data is 20 cm and the spatial sampling on the DTS data is 1m. The dataset is accompanied by a report from Neubrex, which provides further documentation.
DOI: 10.15468/dl.qtn26x
title: Occurrence Download

description: A dataset containing 11291 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Loxostege sticticalis Linnaeus, 1761",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11291 records from 198 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016010-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3j5fe7
title: Occurrence Download

description: A dataset containing 715 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-138.71059 10.74917,-60.99830 10.74917,-60.99830 41.86187,-138.71059 41.86187,-138.71059 10.74917))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ornithostaphylos oppositifolia (Parry) Small"
 ]
}

 The dataset includes 715 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016011-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t5732h
title: Occurrence Download

description: A dataset containing 4989 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lucilia caesar (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4989 records from 236 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016012-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d6aua3
title: Occurrence Download

description: A dataset containing 2090 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Zealand",
 "TaxonKey is Acer pseudoplatanus L."
 ]
}

 The dataset includes 2090 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016013-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rdzbc8
title: Occurrence Download

description: A dataset containing 11521173 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is China"
 ]
}

 The dataset includes 11521173 records from 4817 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015985-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p6mndr
title: Occurrence Download

description: A dataset containing 508 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crotalaria juncea L.",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Occurrence evidence)"
 ]
}

 The dataset includes 508 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006133-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive107312.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive107313.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.