cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/5zdrppdc3j
title: “pyGDM” - new functionalities and major improvements to the python toolkit for nano-optics full-field simulations

description: pyGDM is a python toolkit for electro-dynamical simulations of individual nano-structures, based on the Green Dyadic Method (GDM). pyGDM uses the concept of a generalized propagator, which allows to solve cost-efficiently monochromatic problems with a large number of varying illumination conditions such as incident angle scans or focused beam raster-scan simulations. We provide an overview of new features added since the initial publication [Wiecha, Comput. Phys. Commun. 233 (2018) 167–192]. The updated version of pyGDM is implemented in pure python, removing the former dependency on fortran-based binaries. In the course of this re-write, the toolkit's internal architecture has been completely redesigned to offer a much wider range of possibilities to the user such as the choice of the dyadic Green's functions describing the environment. A new class of dyads allows to perform 2D simulations of infinitely long nanostructures. While the Green's dyads in pyGDM are based on a quasistatic description for interfaces, we also provide as new external python package “pyGDM2_retard” a module with retarded Green's tensors for an environment with two interfaces. We have furthermore added functionalities for simulations using fast-electron excitation, namely electron energy loss spectroscopy and cathodoluminescence. Along with several further new tools and improvements, the update includes also the possibility to calculate the magnetic field and the magnetic LDOS inside nanostructures, field-gradients in- and outside a nanoparticle, optical forces or the chirality of nearfields. All new functionalities remain compatible with the evolutionary optimization module of pyGDM for nano-photonics inverse design.
DOI: 10.17632/7pjyk464bj
title: Manzoli et al. Plastic host selection and facultative generalism in Philornis parasitic flies

description: The matrices are the full datasets used to construct the models presented in the work "Specialist by preference, generalist by need: availability of quality hosts drives parasite choice in a natural multihost parasite system" (Int J Parasitol). In that work, the output of model 1 (first dataset) is shown in Table 1 and that of model 2 (second dataset) in Table 2.
DOI: 10.17632/jzwv82634k
title: Machine Learning model for prediction of geometric parameters of fractal aggregates

description: This dataset supports the article "Machine Learning based tool for efficient estimation of geometric features of aggregated aerosol particles" submitted to Journal of Aerosol Science. Python codes are provided for the ML based tool for the prediction of Hydrodynamic radius and orientationally averaged projected area. This can be used to measure relevant equivalent diameters of fractal aggregate structures. Documentation is also provided in the uploaded files.
DOI: 10.17632/vv654f34hb
title: Audio Magnetotelluric dataset for hydrogeophysical studies in Nkange, Bobonong, Gabane and Kotolaname Villages in Botswana

description: This research study focused on investigating the hydrology of Nkange, Bobonong, Gabane, and Kotolaname villages in Botswana using the Audio Magnetotellurics (AMT) technique. The primary research hypothesis was that the AMT method could provide valuable insights into the depth and availability of groundwater resources in the study area. The AMT data in this study were collected under favorable conditions, with measurements taken every 1 meter along profiles ranging from 20 meters to 50 meters in the selected villages. The data were processed using software such as AIDU prospecting software (other software packages such as Oasis Montaj, and Surfer could be used), allowing for detailed analysis and interpretation of the geological structures and subsurface features. The instrument used demonstrated good quality, as indicated by the similarity in eigenvalues, small trace of the covariance matrix, large determinant of the covariance matrix, and well-conditioned covariance matrices. These results provided valuable insights into the data's structure and relationships, guiding further analysis by geophysicists. The processed data included geology maps, raw resistivity measurements, and 2D images illustrating resistivity values obtained through AMT measurements. The color-coded contour maps generated from the data offered insights into subsurface structures, geological formations, and potential resources like mineral deposits or groundwater aquifers. Notable findings from the data analysis included the identification of high and low resistivity zones, indicating less conductive rock formations or potential water-bearing formations. The adaptability and cost-effectiveness of the AMT technique for large-scale investigations in remote areas were highlighted, emphasizing its utility in hydrogeophysics and groundwater exploration. The dataset provided valuable information for researchers interested in studying hydrogeology in Botswana or similar regions, offering detailed insights into the methodology and results obtained from utilizing the AMT technique for hydrogeophysical investigations.
DOI: 10.6084/m9.figshare.27710010.v1
title: Codon usage bias and host adaptation of canine circovirus identified from various hosts

description: The purpose of this article was to investigate CCV CUB and to lay the foundation for future studies on CCV host preference.
DOI: 10.6084/m9.figshare.3580680.v1
title: ganglion pictures.docx

description: Tuberculous tenosynovitis of the flexor tendons of the wrist: A case Report.<br><br>
DOI: 10.17632/fchjmh83r7
title: Data for: What caused Earth's largest mass extinction event? New evidence from the Permian-Triassic boundary in northeastern Utah

description: This geochemistry data comes from a newly discovered extraordinarily well-preserved stratigraphic section of the Permian-Triassic boundary in Utah. The data features a comprehensive geochemical dataset from northeastern Utah, assembled from a unique and remarkable 9-meter section of rock in Sheep Creek Valley. The findings include a large-scale carbon isotopic excursion across the event, indicative of high atmospheric carbon dioxide, as well as a dramatic reduction in the deposition of calcium carbonate due to ocean acidification at the boundary layer. This study further documents an elevated mercury-spike, as well as observed elevated lead, zinc and strontium content. This evidence suggests large amounts of naturally occurring emissions of coal combustion at the Permian-Triassic boundary, likely caused by the large scale volcanic eruptions of the coeval Siberian Traps. The resulting global changes associated with the abrupt enrichment of the atmosphere in carbon dioxide was the major contributor to the mass extinction event. This is the first study to examine barium content across the Permian-Triassic boundary, and it provides evidence that upwelling of methane hydrate in the oceans followed the initial acidification event. Ocean anoxia (absence of oxygen) is suggested by the unusual deposition of pyrite within the shallow marine waters of the once coastal sediments of northeastern Utah. Precession orbital geochemical variation is observed in the stratigraphic section allowing a finer temporal resolution beyond any previously published section. Together, this dataset gives a unique picture of an ancient cataclysm that altered life on Earth.
DOI: 10.17632/35yz2ypm6r
title: WIND TURBINE - BATTERY RENEWABLE ENERGY SOURCE OPTIMIZATION

description: This dataset includes synthetically generated Load and Wind speed data. The optimal number of wind turbine, inverter power and number of batteries also included. The dataset includes 29610 different randomly generated cases and their optimums.
DOI: 10.17632/hc8cstzcxx
title: Data_Multi-objective optimization models for the design of water distribution networks by exploring scenario-based approaches

description: Nodal demands scenarios of Fossolo network for the case of 7 scenarios with and without sub-intervals and 11 scenarios with and without sub-intervals.
DOI: 10.17632/kkh7wmphmb
title: Data article - Extreme weather and crop diversification: adaptation to climate change in Brazil

description: Panel data 1996, 2006, 2017 - Fixed effects
Panel data future scenarios
Code Stata
DOI: 10.17632/4x29x6vc3f
title: New activity of Astaxanthin Data

description: Network pharmacology methods were used to analyze the targets and signaling pathways of astaxanthin in the treatment of spermatogenesis. An in vitro cell culture method was used to observe the effects of astaxanthin on the proliferation and apoptosis of spermatogonial stem cells. The therapeutic effect of astaxanthin on oligoasthenozoospermia in mice induced with cyclophosphamide was observed. ACSL3, VDAC, GPX4, FADS2, GLS2, Steap3, MDA, GSH-Px, iron ions, etc., were detected. The role and mechanism of these were analyzed. The results showed Astaxanthin has 52 key targets for treating spermatogenesis, among which the oxidative stress metabolic pathway is one of the most important factors. The sperm concentration and forward motility of the model mice fed with astaxanthin were significantly greater than those of the control group. The proliferation rate of spermatogonial stem cells cultured with astaxanthin was also significantly greater than that of the control group, and the proportion of apoptotic cells was significantly lower. Astaxanthin can reduce ACSL3, MDA, and iron ions in spermatogonial stem cells; increase the expression of Steap3, VDAC, GPX4, GLS2, GSH-Px, and FADS2; and improve ester metabolism to promote spermatogenesis in oligoasthenozoospermia model mice.
DOI: 10.17632/g3dn7mzvhb
title: data and codes for "Originating a counter-COVID measure for 3-objective portfolio selection and computing mean parameterized nondominated paths for sensitivity analysis"

description: data and codes
DOI: 10.17632/ppgwyygfmf
title: AGW_Mars_OMEGA

description: Raw files composed by .NAV and .QUB files were produced by the OMEGA instrument on board the Mars Express space mission, and the .pkl files were produced by the OMEGA-Py Python scripts. The .pkl files were used to navigate the projected images using the OMEGA-Py to detect and characterise atmospheric gravity waves in the Martian atmosphere. Each zip file represents data from the nominal mission (NOMINAL.zip), first extension of the mission (EXT1.zip), and the second extension of the mission (EXT2.zip).
DOI: 10.17632/v7vtr4j9k3
title: Data for: How Much Do Conditional Cash Transfers Increase the Utilization of Maternal and Child Health Care Services? New Evidence from Janani Suraksha Yojana in India

description: It should be noted that all data are analyzed in Stata 14. The data pack in rar contains data and do files.
DOI: 10.17632/tc74d4vk6k
title: Evidence of Langmuir mixing effects in the upper ocean layer during tropical cyclones using observations and a coupled wave-ocean model

description: These data are for the publication:
"Zhou, Xiaohui, et al. "Impacts of surface waves on upper ocean responses under tropical cyclones (in prep)." 

There are 3 folders:
(1) Simulations: all simulations at EM-APEX floats and Lagrangian Floats under 5 TCs
(2) observation from EM-APEX floats:  The temperature, salinity, and wind-driven current at EM-APEX float under 5 TCs, which is from Dr. Je-Yuan Hsu at National Taiwan University and Dr. Eric D'Asaro at the University of Washington.
(3) observation from Lagrangian floats: The bulk VVV at Lagrangian floats under 5 TCs, which is from Dr. Eric D'Asaro at the University of Washington.
(4) all U10 forcing for 5 TCs, which is too larged to be stored here, can be accessible by requesting
(5) initial Temperature  and Salinity profiles for each float for Fig 3
DOI: 10.17632/htrb33gdfj
title: Wake flow past two parallel cylinders at several incidence angles

description: Data result from careful measurements with hot wires in an aerodynamic channel and from flow visualization in a hydraulic channel to study the wake behavior after pairs of finite cylinders with 25 mm diameter and pitch-to-diameter ratio p/d = 1.26, at several angular positions to the flow, 0o (side-by-side), 2.5o, 5o, 15o, 25o, 35o, 45o, 75o and 90o (tandem). The aerodynamic channel was made of acrylic, with a cross section of 0.147 m x 0.193 m. The flow velocity was 10 m/s, turbulence intensity of about 1%, Reynolds number 1.66x104. The two circular cylinders were made of PVC with a diameter of 25.1 mm, and a blockage ratio of 13% - 26%, depending on the angular position of the cylinders. Wake flow velocity was measured with a DANTEC StreamLine CTA system with two DANTEC 55P11 probes. Data acquisition was performed by a USB 16-bit NI USB-9162 A/D board, sampling frequency 1000 Hz, low pass filter 300 Hz, 131,072 samples, time series 131.072 s long. The cylinders and the probes were numbered as 1 and 2. Cylinder number one is on the left side of the flow stream. At positions different of 0o, cylinder number 2 faced the flow firstly. Flow visualizations were made in a closed-circuit hydraulic channel with the same dimensions as the aerodynamic channel. The Reynolds number was 1.97x10³ (kinematic viscosity of the water at 15 ºC was 1.14 x 106 m²/s), turbulence intensity about 4%. Two ink tanks provided dye, injected by gravity in the flow through 3 mm diameter flexible PVC tubes inside the cylinders. Video resolution was 1080 x 720 pixels at 30 FPS. Each movie was 25 minutes long. A mirror at 45° with the camera allowed simultaneous top and side view. From top view images, a time series of the angle formed between the tangent to the cylinder wall and the deflected flow from the gap between the cylinders was generated with Tracker and Matlab software. Angles were measured at each 200 frames (6.67 s), sampling frequency of 0.15 Hz. Data are in .txt format to be read by almost all software. Excerpts from the movies from the flow visualizations are in .mkv format. Velocity series files: Velocity signals from the hot wire anemometers (m/s) – Time (s); velocity Probe 1; velocity Probe 2 06 Vel 0 deg.txt: Side-by-side cylinders 0o. 11 Vel 2.5 deg.txt: 2.5o. 12 Vel 5 deg.txt: 5o. 13a Vel 15 deg.txt: 15o. 13b Vel 25 deg.txt: 25o. 13c Vel 35 deg.txt: 35o. 15a Vel 45 deg.txt: 45o. 15b Vel 60 deg.txt: 60o. 15c Vel 75 deg.txt: 75o. 15d Vel 90 deg.txt: Tandem 90o. Angular deflection file: 16 Flow deflection angle.txt: Deflection angles from flow visualizations respectively for 0° (side-by-side cylinders), 2.5°, 5°, 15°, 25°, 35°, 45°, 60°, 75° and 90° (tandem). Flow visualization files: Top and side view of flow visualization. Cylinder position is inverted on top view by a mirror. 0deg.mkv: 0° (side-by-side). 2.5deg.mkv: 2.5o. 5deg.mkv: 5o. 15deg.mkv 15o. 25deg.mkv: 25o. 35deg.mkv: 35o. 45deg.mkv: 45o. 60deg.mkv: 60o. 75deg.mkv: 75o. 90deg.mkv: 90o (tandem).
DOI: 10.17632/bv3p74cz7m
title: Supplementary Materials for "No association between low-dose oral minoxidil and pericardial effusion in a large retrospective cohort study of non-scaring alopecia patients"

description: Appendix 1 for "No association between low-dose oral minoxidil and pericardial effusion in a large retrospective cohort study of non-scaring alopecia patients."
DOI: 10.6084/m9.figshare.16681771.v6
title: Reliability and validity of the Brief Emotional Experience Scale (BEES) for mood monitoring

description: Raw data for paper titled: Reliability and validity of the Brief Emotional Experience Scale (BEES) for mood monitoring
DOI: 10.17632/fs4kwd29gf
title: Romania rural health dataset 2015-2017

description: Abstract Data from 2988 subjects were collected during health campaigns aimed at providing free medical care in rural, remote areas of Romania. Rural residents underwent medical examinations and blood tests, to evaluate the prevalence CVDs and of their major risk factors, i.e. hypertension (HT), obesity, smoking, diabetes, and dyslipidemia. The overall prevalence of CVD was 14%: coronary heart disease (9%), stroke (2.9%), peripheral artery disease (1.3%) and atrial fibrillation (3.2%). Prevalence of HT was unexpectedly high (72.8%) as was the proportion of newly diagnosed HT (33.3%). Of those aware, 65% were treated, but only 17.2% were on target. Other CV risk factors prevalence was: obesity (31.3%), diabetes mellitus (12.6%), dyslipidemia (64.7%) and smoking (16.2%). Obesity, smoking, and diabetes increased the likelihood of developing CVD by 1.7 times, with HT being the leading risk factor by 2.7-fold. The 10-year risk of a cardiovascular event (Framingham score) was high (over 20%) in one third of the subjects, while the risk of a fatal CV event in the following 10 years (SCORE) was above 5% in almost a quarter (22%) of the studied population. In this study, the first focusing on the health of the rural population in Romania, the prevalence of HT was unexpectedly high, as was the cardiovascular risk, pointing to the need of strategies to improve medical care. Methods Information regarding the health of rural residents was collected during campaigns organized by the “Doctors’ Caravan Association” - a non-governmental organization composed of physicians and medical students volunteering to travel to Romania’s rural regions and offer free medical services. The selection of the settlements was done according to the association’s objectives, aimed at providing basic medical care to people in rural areas with low accessibility to medical services. The study was conducted between 2015 and 2017 in 20 villages/small towns located mostly in the South and East of Romania. A total of 2988 patients were examined by the volunteering physicians. After obtaining an informed consent, blood tests were drawn from the inhabitants willing to be examined. The blood panel included a complete blood count, lipid profile (cholesterol, triglycerides, low density lipids), glucose and glycated hemoglobin, as well as markers for liver and kidney function (alanine transaminase and creatinine) and chronic hepatitis B and C markers. On a second visit, a team of medical doctors recorded a standardized medical history, measured the blood pressure (BP), performed a full physical exam and gave treatment recommendations based on the clinical findings and the laboratory tests.
DOI: 10.6084/m9.figshare.27959760.v1
title: EHR data from patients with AML and AML-Simiar diseases

description: This describes the datasets used for training and evaluation Onto-CGAN model sourced from the MIMIC-IV Clinical Database V2.2. The query script used for data extraction is listed below. Due to the restricted access policies of the MIMIC database, we are unable to publish the extracted subset of MIMIC data. However, researchers with authorized access to the MIMIC-IV database may request the experimental patient data from the corresponding author.<br><b>SQL Query in MIMIC </b><i>SELECT</i><i> </i><i>DISTINCT</i><i> </i><i>diag_table.subject_id</i><i>, </i><i>diag_table.icd_code</i><i>, </i><i>diag_table.hadm_id</i><i>, </i><i>patients_table.gender</i><i>, </i><i>patients_table.anchor_age</i><i>, </i><i>omr_table.result_name</i><i>, </i><i>omr_table.result_value</i><i>,</i><i>patients_table.dod</i><i>FROM</i><i> </i><i>`physionet-data.mimiciv_hosp.diagnoses_icd`</i><i> </i><i>AS</i><i> </i><i>diag_table</i><i>JOIN</i><i> </i><i>`physionet-data.mimiciv_hosp.patients`</i><i> </i><i>AS</i><i> </i><i>patients_table</i><i> </i><i>ON</i><i> </i><i>diag_table.subject_id</i><i> = </i><i>patients_table.subject_id</i><i>JOIN</i><i> </i><i>`physionet-data.mimiciv_hosp.omr`</i><i> </i><i>AS</i><i> </i><i>omr_table</i><i> </i><i>ON</i><i> </i><i>diag_table.subject_id</i><i> = </i><i>omr_table.subject_id</i><i>WHERE</i><i> </i><i>diag_table.icd_code</i><i> </i><i>LIKE</i><i> </i><i>'20%'</i>
DOI: 10.17632/dwcb82frsn
title: Tourism industry resilience and its influencing factors in 60 BRI countries

description: This dataset examines 60 BRI countries, encompassing 11 countries in Southeast Asia (Timor-Leste, the Philippines, Cambodia, Laos, Malaysia, Myanmar, Thailand, Brunei, Singapore, Indonesia, and Viet Nam), 2 countries in Northeast Asia (China and Mongolia), 6 countries in South Asia (Pakistan, Bhutan, Maldives, Nepal, Sri Lanka, and India), 4 countries in Central Asia (Kazakhstan, Kyrgyzstan, Tajikistan, and Uzbekistan), and 18 countries in West Asia North Africa (Oman, Azerbaijan, Palestine, Bahrain, Georgia, Qatar, Kuwait, Lebanon, Saudi Arabia, Turkey, Syria, Armenia, Yemen, Iraq, Iran, Israel, Jordan, and Egypt). Central and Eastern Europe includes 20 countries (Albania, Estonia, Bulgaria, Poland, Bosnia and Herzegovina, Montenegro, Czech Republic, Croatia, Latvia, Lithuania, Romania, Macedonia, Serbia, Slovakia, Slovenia, Hungary, Belarus, Russia, Moldova, and Ukraine).
DOI: 10.17632/kvwknkdpfz
title: Global Scientific Research on SARS-CoV-2 (COVID-19).

description: For analyzing data in the VOS viewer, we used ISI, PubMed, and Scopus as a database. Data were obtained from the Web of Science (WOS), PubMed, and Scopus on March 02, 2020, and updated on March 10. to analyzed in VOS viewer software. The keywords were divided into three clusters: Generally, the lesser the distance between two key-terms, the greater the number of co-occurrences of the terms. The larger circle represents the more frequent keyword
DOI: 10.6084/m9.figshare.24083430.v3
title: Research data of HJS section

description: HJS section-climate and vegetation reconstruction across the MCO
DOI: 10.17632/p3bwbphj6x
title: Data for: Long-term dynamic simulation of environmental impacts on ecosystem-based pond aquaculture

description: "Fishpond simulation" folder contains an executable process simulator with the necessary auxiliary files and with a detailed guide, for demonstration purposes. "Fishpond model structure with functionalities" folder contains the model structure with the local programs of the fishpond model, as well as the description of model parameters, as follows: -FP_NewCarp_4.txt is the model, implemented in the method of Programmable Process Structures. It contains information about both the model structure and the calculating local declarative programs. It can be studied with common graph visualization tools, using .graphml format (e.g. yED graph editor, etc.). -Param_input_output variables.xlsx contains detailed information about the global variables, inputs, parameters and outputs in the application specific (locally executable) program code of the model. Referred parameters, input and output variables are explained together with listing of their initial and parameter values, as well as their literature references. "Example model outputs" folder contains some illustrative output of the developed dynamic simulation model, as follows: -Output_2010-2016.xlsx: Outputs of simulations for years 2010-2016, utilizing factual data from SzegedFish Ltd. It is discussed in Section 5.2. -Output_design_space.xlsx: Calculations with various feeding and stocking densities for a fishpond, characterizing local conditions. Necessary conditions can be found in Sheet INFO. It is discussed in Section 5.3. -Output_daily_recording.xlsx: Illustration of simulation results for NorESM RCP 4.5 and 8.5 climate scenarios, with daily output recording, for six scenarios, defined in Sheet INFO. It is discussed in Section 5.4. -Output_Oct31_recording.xlsx: Simulation results with output recording at the last day of production season, Oct 31. Contains full simulation results for NorESM RCP 4.5 and 8.5 climate scenarios for two locations in Hungary (Szeged and Debrecen). It is discussed in Section 5.4.
DOI: 10.6084/m9.figshare.2361208.v1
title: Eye wrinkle expression in horses

description: Eye wrinkle expression in horses