cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/sdjzbwp8yy.1
title: Data for: Design and experimental study of a low cost prefab Trombe Wall to improve indoor temperatures in social housing in the Biobío Region in Chile

description: The data are from 2 monitoring campaign about an experimental prototype for a Low-Cost South of Chile. This experiment was part of the Bioclimatic Prosthesis project for wooden architecture. A system development for adaptive components to passive refurbishment and energy rehabilitation in different microclimatic contexts from Biobío region. Project Code [14.1554-IN.IIP]., Research was Funded by INNOVA Biobío from CORFO(Production Development Corporation). 
This paper is done as a part of a Post-Doctoral research in KU Leuven University Belgium funded by a Scholarship 2018-2020 from Becas-Chile CONICYT (Chilean National Research Science and Technology Council), for the research project titled Bioclimatic and Architectonic Prosthesis. From local adaptations to an incremental system for refurbishment and adaptive social housing.

The monitoring periods and data collection are summarized for Coronel (coastal city) and for Chillán (Central valley city) in a representative week. Include detailed scenarios results for the city of Chillán.
DOI: 10.17632/t5jdrzfwjs.1
title: A study of MapToCleave: high-throughput profiling of microRNA biogenesis in living cells. Kang et al. : Count table of MapToCleave miRNA precursors for cell type specific processing

description: count_table_of_MapToCleave_miRNA_precursors_for_cell_type_specific_processing_analysis.txt, Related to Figure 2A.
The count table of MapToCleave miRNA precursors was measured as the main method of “Profiling cell type dependent processing of MapToCleave sequences”.
DOI: 10.17632/zk257mkcvb.1
title: A study of MapToCleave: high-throughput profiling of microRNA biogenesis in living cells. Kang et al. : Modified miRNA precursors for experimental validation

description: modified_miRNA_precursors_for_experimental_validation.fasta, Related to Figure 5. 
The file provides the precursor, 5p and 3p arm sequence of the miRNA precursors that were used for the validation experiment described in method section “Design of miRNA precursors with improved or impaired processing”.
DOI: 10.17632/sgjv7tm2x3.1
title: A study of MapToCleave: high-throughput profiling of microRNA biogenesis in living cells. Kang et al. : MapToCleave feature importance estimation

description: MapToCleave_feature_importance_estimation.txt, Related to Figure 7B. 
The data frame of features profiled from MapToCleave processed and unprocessed miRNA precursors were used for the feature importance estimation in Figure 7B. The values in the column “log2_fold_change” are log2 fold change of the mean hairpin expression (RPM) between the transfected cells and the mock HEK-293T cells. The 1, 0 and NA values in the column of sequence motifs mean presence, absent or unknown. The columns of “free_energy_4mer_atposition” represents the local free energy of 4-mer window sliding through the hairpin, which was measured in the method section “Profiling local free energy of MapToCleave hairpins” but using a 4-mer window. The columns of “Shannon_entropy_atposition_from_5p/3p_start” represent positional Shannon entropy measured in the method section “Profiling Shannon entropy of MapToCleave hairpins”.
DOI: 10.17632/6xtgkhsbds.1
title: A study of MapToCleave: high-throughput profiling of microRNA biogenesis in living cells. Kang et al. : Count table of MapToCleave hairpins tested in HEK and NIH 3T3 cells

description: count_table_of_MapToCleave_hairpins_in_HEK_and_NIH3T3.txt, Related to Figure 1. 
The RNA and DNA expression of hairpins in human HEK-293T and mouse NIH/3T3 cells, which was measured as described in the method section “MapToCleave sequence data quality control and pre-processing”. The sample ID provides information on cell type, replicate number, mock or transfection, transfection concentration, the amount of RNA materials for Illumina library preparation, with or without FACS sorting and RNA or DNA counts. For example, the sample ID “HEK_R1_mock_0x_1000ng_NOR.sRNA” means that the sample is from human HEK-293T cells, replicate 1, mock, 0 transfection concentration, 1000ng RNA materials were used for library preparation, without FACS sorting and RNA counts.
DOI: 10.17632/4xzrxbzdv8.1
title: A study of MapToCleave: high-throughput profiling of microRNA biogenesis in living cells. Kang et al. : MapToCleave processed miRNA precursors

description: MapToCleave_processed_miRNA_precursor_IDs.txt, Related to Figure 2B.
The file contains the identity information of MapToCleave processed miRNA precursors tested in human HEK-293T cells. The human (hsa), mouse (mmu), drosophila (dme) and nematode (cel) miRNA precursors are bona fide miRNA curated in MirGeneDB, while planarian (sme) and sea anemone (nve) miRNA precursors are curated in miRBase.
DOI: 10.17632/cgnggdp2by.1
title: A study of MapToCleave: high-throughput profiling of microRNA biogenesis in living cells. Kang et al. : In vivo expression feature importance estimation

description: in_vivo_expression_feature_importance_estimation.txt, Related to Figure 7B. 
Similar to Data S8, but features are profiled from human MirGeneDB miRNA precursors. The expression of miRNA precursors is measured by mean RPM across 26 types of human tissues curated from public small RNA sequencing datasets by the MirGeneDB study (Fromm et al., 2020).
DOI: 10.17632/gzmj7tctgs.1
title: A study of MapToCleave: high-throughput profiling of microRNA biogenesis in living cells. Kang et al. : Local free energy in 7-mer of MapToCleave processed and unprocessed miRNA precursors

description: local_free_energy_7-mer_of_MapToCleave_processed_and_unprocessed_miRNA_precursors.txt, Related to Figure 3C-D.
The column names represent the relative position from the 5’ side of Drosha cleavage site.
DOI: 10.17632/xkvpw9drvr.1
title: A study of MapToCleave: high-throughput profiling of microRNA biogenesis in living cells. Kang et al. : Count table for experimental validation

description: count_table_for_experimental_validation.txt, Related to Figure 5. 
The count table of human miRNA precursors (miRBase v21) and modified miRNA precursors (Data S10) was generated as described in the method section “Design of miRNA precursors with improved or impaired processing”. The combinatorial sets of the precursors used in the lower basal stem stability validation are shown in Table S2.
DOI: 10.17632/msm34n43j4.1
title: A study of MapToCleave: high-throughput profiling of microRNA biogenesis in living cells. Kang et al. : MapToCleave unprocessed miRNA precursors

description: MapToCleave_unprocessed_miRNA_precursor_IDs.txt, Related to Figure 2B.
The file contains the identity information of MapToCleave unprocessed miRNA precursors tested in human HEK-293T cells. The human (hsa), mouse (mmu), drosophila (dme) and nematode (cel) miRNA precursors are bona fide miRNA curated in MirGeneDB, while planarian (sme) and sea anemone (nve) miRNA precursors are curated in miRBase. It should be noted that 16 unprocessed miRNA precursors annotated as mirtron were removed from the list. They will not affect the analysis. The removed mirtron miRNA precursors are: cel-mir-62:MI0000033:in:mirtron,dme-mir-1003:MI0005864:in:mirtron,dme-mir-1004:MI0005865:in:mirtron,dme-mir-1005:MI0005866:in:mirtron,dme-mir-1006:MI0005867:in:mirtron,dme-mir-1007:MI0005868:in:mirtron,dme-mir-1008:MI0005869:in:mirtron,dme-mir-1009:MI0005870:in:mirtron,dme-mir-1010:MI0005871:in:mirtron,dme-mir-1012:MI0005873:in:mirtron,dme-mir-1013:MI0005874:in:mirtron,dme-mir-1014:MI0005875:in:mirtron,hsa-mir-3940:MI0016597:in:3p-tailed,hsa-mir-5010:MI0017878:in:5p-tailed,mmu-mir-1981:MI0009992:in:mirtron and mmu-mir-3097:MI0014090:in:5p-tailed.
DOI: 10.17632/ksypv2smvp.2
title: Supplementary dataset for Chavez et al "Provenance of the Middle Jurassic-Cretaceous sedimentary rocks of the Arequipa Basin (South Peru) and implication for the geodynamic evolution of the Central Andes" 

description: Supplementary Dataset for a paper submitted to Gondwana research:
Table S1: Data reporting Information for LA- ICP-MS U-Th-Pb data analyzed at the Laboratory of Geochronology (University of Brasilia). Table S2: Lu-Hf isotopes results. 
Table S3: U-Pb ages ARE304, Base of Puente Formation. 
Table S4: U-Pb ages ARE312, Top of Puente Formation.
Table S5: U-Pb ages ARE305, Paleo channel of the base in Cachios Formation.
Table S6: U-Pb ages ARE306, Paleo channel in the top of Cachios Formation
Table S7: U-Pb ages ARE14, Top of the sequence, Labra Formation. 
Table S8: U-Pb ages ARE367, Sandstone sequence in Gramadal Formation.
Table S9: U-Pb ages ARE16, Base of the Hualhuani Formation. 
Table S10: U-Pb ages ARE17, Top of the Hualhuani Formation. 
Table S11: U-Pb ages ARE339, Top of Murco Formation.
Table S12: U-Pb ages ARE332, siltstone of the Chilcane Formation.
Table S13: U-Pb ages and Crystallisation – Depositional age calculus for the Puente formation samples
Table S14: U-Pb ages and Crystallisation – Depositional age calculus for the cachios formation samples
Table S15: U-Pb ages and Crystallisation – Depositional age calculus for the Labra formation sample
Table S16: U-Pb ages and Crystallisation – Depositional age calculus for the Gramadal formation samples
Table S17: U-Pb ages and Crystallisation – Depositional age calculus for the Hualhuani formation samples
Table S18: U-Pb ages and Crystallisation – Depositional age calculus for the Murco formation sample
Table S19: U-Pb ages and Crystallisation – Depositional age calculus for the Chilcane formation sample
Supplementary Figure 1: Cathodoluminescence images of dated zircons
Table 1: Synthesis of the potential source location for the U-Pb zircon age (see text for details and references); CC: Coastal Cordillera, Alt: Altiplano, EC: Eastern Cordillera; Craton: Amazon craton;
Table 2: Sr-Sm-Nd systematics of analyzed sedimentary rocks
Table 3: Percentages of U–Pb ages representing known orogenic events (bold) on the Amazonian craton and adjacent regions. Age ranges are from Tassinari et al. (2000) and Reimann et al. (2010).
DOI: 10.17632/z6zf48nvct.1
title: A study of MapToCleave: high-throughput profiling of microRNA biogenesis in living cells. Kang et al. : Drosha cleavage precision of MapToCleave processed miRNA precursors

description: drosha_cleavage_precision_of_MapToClave_processed_miRNA_precursors.txt, Related to Figure 1H and Figure 6A. 
The file shows the abundance of the aligned reads that have the 5’ start site located at the region of 5 nucleotides upstream to 5 nucleotides downstream from the dominant cut sites made by Drosha and Dicer. The column names provide information about cell type, transfection concentration, pooled replicate 1 to 4, miRNA arm, beginning or end of the arm, and position (ranged from -5 to 5) relative to the identified dominant cut site (indicated by 0).
DOI: 10.5281/zenodo.5701454
title: FW306_03

description: Reads, assembly and bins for FW306_03
DOI: 10.5281/zenodo.5701453
title: FW306_03

description: Reads, assembly and bins for FW306_03
DOI: 10.6084/m9.figshare.17009348
title: Whitt 2021 LES paper, Data for plotting ROMS results

description: Data for plotting ROMS results.
DOI: 10.6084/m9.figshare.15123891.v1
title: <i>Proviviparus talbragarensis</i> gen. et sp. nov., the first viviparid snail from the Late Jurassic of Australia

description: Extinct freshwater snails of the family Viviparidae can be found on all continents with the exception of Madagascar and Antarctica. These snails are usually thought to have evolved in the Early Jurassic of Laurasia. Our findings suggest that viviparids may have achieved an almost worldwide distribution by the Late Jurassic. Here we report viviparid snails from the Upper Jurassic Talbragar Fish Bed in New South Wales, Australia, and describe them as a new genus and species. This represents the first reliable record of the family Viviparidae from the Jurassic of Gondwana. One specimen shows a thin operculum and in another there is evidence of brooding. <i>Michael Frese</i> [<i>michael.frese@canberra.edu.au</i>], <i>Faculty of Science and Technology, University of Canberra, Canberra, Australian Capital Territory 2601, Australia and Australian Museum Research Institute, College Street, Sydney, New South Wales 2010, Australia; Winston Ponder</i> <i>[wponder@bigpond.net.au</i>], <i>Australian Museum Research Institute, College Street, Sydney, New South Wales 2010, Australia</i>.
DOI: 10.6084/m9.figshare.16583912
title: New data on one of the first plesiosaur (Reptilia, Sauropterygia) skeletons recovered from Antarctica, with comments on the dorsal and sacral regions of elasmosaurids

description: Elasmosaurids are among the most frequently recorded marine reptile fossils from the Campanian–Maastrichtian strata of Antarctica. Here, we describe one of the earliest quarried specimens, MLP 82-I-28-1, which is identified as a non-aristonectine elasmosaurid and phylogenetically nested within Weddellonectia. An ancestral states analysis of dorsal and sacral vertebral counts suggests that weddellonectian elasmosaurids plesiomorphically possessed between 17 and 18 dorsal vertebrae. The comparatively high count of 24 dorsal vertebrae observed in aristonectine elasmosaurids, such as <i>Aristonectes quiriquinensis</i>, thus likely represents a derived state correlated with the acquisition of larger body size. <i>José O’Gorman [joseogorman@fcnym.unlp.edu.ar] División Paleontología Vertebrados, Museo de La Plata, Universidad Nacional de La Plata, Paseo del Bosque s/n., B1900FWA La Plata; CONICET: Consejo Nacional de Investigaciones Científicas y Técnicas, Argentina, Godoy Cruz 2290, C1425FQB, CABA, Argentina; Franco Aspromonte [fran.aspromonte@gmail.com] División Paleontología Vertebrados, Museo de La Plata, Universidad Nacional de La Plata, Paseo del Bosque s/n., B1900FWA La Plata;</i><i>Marcelo Reguero [mreguero@dna.gov.ar] División Paleontología Vertebrados, Museo de La Plata, Universidad Nacional de La Plata, Paseo del Bosque s/n., B1900FWA La Plata; Instituto Antártico Argentino, 25 de Mayo 1143, B1650HMK, San Martín, Buenos Aires, Argentina.</i>
DOI: 10.6084/m9.figshare.15123891
title: <i>Proviviparus talbragarensis</i> gen. et sp. nov., the first viviparid snail from the Late Jurassic of Australia

description: Extinct freshwater snails of the family Viviparidae can be found on all continents with the exception of Madagascar and Antarctica. These snails are usually thought to have evolved in the Early Jurassic of Laurasia. Our findings suggest that viviparids may have achieved an almost worldwide distribution by the Late Jurassic. Here we report viviparid snails from the Upper Jurassic Talbragar Fish Bed in New South Wales, Australia, and describe them as a new genus and species. This represents the first reliable record of the family Viviparidae from the Jurassic of Gondwana. One specimen shows a thin operculum and in another there is evidence of brooding. <i>Michael Frese</i> [<i>michael.frese@canberra.edu.au</i>], <i>Faculty of Science and Technology, University of Canberra, Canberra, Australian Capital Territory 2601, Australia and Australian Museum Research Institute, College Street, Sydney, New South Wales 2010, Australia; Winston Ponder</i> <i>[wponder@bigpond.net.au</i>], <i>Australian Museum Research Institute, College Street, Sydney, New South Wales 2010, Australia</i>.
DOI: 10.6084/m9.figshare.16583912.v3
title: New data on one of the first plesiosaur (Reptilia, Sauropterygia) skeletons recovered from Antarctica, with comments on the dorsal and sacral regions of elasmosaurids

description: Elasmosaurids are among the most frequently recorded marine reptile fossils from the Campanian–Maastrichtian strata of Antarctica. Here, we describe one of the earliest quarried specimens, MLP 82-I-28-1, which is identified as a non-aristonectine elasmosaurid and phylogenetically nested within Weddellonectia. An ancestral states analysis of dorsal and sacral vertebral counts suggests that weddellonectian elasmosaurids plesiomorphically possessed between 17 and 18 dorsal vertebrae. The comparatively high count of 24 dorsal vertebrae observed in aristonectine elasmosaurids, such as <i>Aristonectes quiriquinensis</i>, thus likely represents a derived state correlated with the acquisition of larger body size. <i>José O’Gorman [joseogorman@fcnym.unlp.edu.ar] División Paleontología Vertebrados, Museo de La Plata, Universidad Nacional de La Plata, Paseo del Bosque s/n., B1900FWA La Plata; CONICET: Consejo Nacional de Investigaciones Científicas y Técnicas, Argentina, Godoy Cruz 2290, C1425FQB, CABA, Argentina; Franco Aspromonte [fran.aspromonte@gmail.com] División Paleontología Vertebrados, Museo de La Plata, Universidad Nacional de La Plata, Paseo del Bosque s/n., B1900FWA La Plata;</i><i>Marcelo Reguero [mreguero@dna.gov.ar] División Paleontología Vertebrados, Museo de La Plata, Universidad Nacional de La Plata, Paseo del Bosque s/n., B1900FWA La Plata; Instituto Antártico Argentino, 25 de Mayo 1143, B1650HMK, San Martín, Buenos Aires, Argentina.</i>
DOI: 10.6084/m9.figshare.16583912.v2
title: New data on one of the first plesiosaur (Reptilia, Sauropterygia) skeletons recovered from Antarctica, with comments on the dorsal and sacral regions of elasmosaurids

description: Elasmosaurids are among the most frequently recorded marine reptile fossils from the Campanian–Maastrichtian strata of Antarctica. Here, we describe one of the earliest quarried specimens, MLP 82-I-28-1, which is identified as a non-aristonectine elasmosaurid and phylogenetically nested within Weddellonectia. An ancestral states analysis of dorsal and sacral vertebral counts suggests that weddellonectian elasmosaurids plesiomorphically possessed between 17 and 18 dorsal vertebrae. The comparatively high count of 24 dorsal vertebrae observed in aristonectine elasmosaurids, such as <i>Aristonectes quiriquinensis</i>, thus likely represents a derived state correlated with the acquisition of larger body size. <i>José O’Gorman [joseogorman@fcnym.unlp.edu.ar] División Paleontología Vertebrados, Museo de La Plata, Universidad Nacional de La Plata, Paseo del Bosque s/n., B1900FWA La Plata; CONICET: Consejo Nacional de Investigaciones Científicas y Técnicas, Argentina, Godoy Cruz 2290, C1425FQB, CABA, Argentina; Franco Aspromonte [fran.aspromonte@gmail.com] División Paleontología Vertebrados, Museo de La Plata, Universidad Nacional de La Plata, Paseo del Bosque s/n., B1900FWA La Plata;</i><i>Marcelo Reguero [mreguero@dna.gov.ar] División Paleontología Vertebrados, Museo de La Plata, Universidad Nacional de La Plata, Paseo del Bosque s/n., B1900FWA La Plata; Instituto Antártico Argentino, 25 de Mayo 1143, B1650HMK, San Martín, Buenos Aires, Argentina.</i>
DOI: 10.5281/zenodo.5701498
title: Supplementary materials for User Acceptance Factors of Usage-Based Insurance

description: <strong>Overview</strong> This is supplementary material for the paper <em>User Acceptance Factors of Usage-Based Insurance</em>. What is included: 01-survey-questionnaire.pdf - questionnaire used in the user study. 02-ubci-video-explanations.mp4 - a video with an explanation about Usage-Based Car Insurance, which we provided to participants in our user study. 03-SEM_Iteration-1-standardized.pdf - SEM analysis of the theoretical model, including the standardized coefficient. 04-SEM_Iteration-1-unstandardized.pdf - SEM analysis of the theoretical model, including the unstandardized coefficient. 05-SEM_Iteration-22-standardized.pdf - SEM analysis of the refined model, including the standardized coefficient. 06-SEM_Iteration-22-unstandardized.pdf - SEM analysis of the refined model, including the unstandardized coefficient. 07-linear-regression.pdf - interactors / moderators analysis.
DOI: 10.5517/ccdc.csd.cc20thzb
title: CCDC 1871562: Experimental Crystal Structure Determination

description: Related Article: Byung-Chang Oh, Eunyoung Yoon, Jintaek Gong, Jaewook Kim, Russell W. Driver, Yongjun Kim, Woo Youn Kim, Hee-Seung Lee|2021|Small|17|2102525|doi:10.1002/smll.202102525
DOI: 10.5517/ccdc.csd.cc21qhz8
title: CCDC 1898470: Experimental Crystal Structure Determination

description: Related Article: Rifahath Neyyappadath,  Mark Greenhalgh,  David Cordes,  Alexandra Slawin,  Andrew David Smith|2019|Eur.J.Org.Chem.|2019|5169|doi:10.1002/ejoc.201900326
DOI: 10.5517/ccdc.csd.cc21qj0b
title: CCDC 1898471: Experimental Crystal Structure Determination

description: Related Article: Rifahath Neyyappadath,  Mark Greenhalgh,  David Cordes,  Alexandra Slawin,  Andrew David Smith|2019|Eur.J.Org.Chem.|2019|5169|doi:10.1002/ejoc.201900326
DOI: 10.26188/17009417
title: Dickerson et al 2021 Ethology

description: Datasets for Dickerson et al 2021 Male and female Australian magpie-larks respond differently to variation in song frequency (pitch), <i>Ethology. </i>Behavioural dataset contains the response of magpie-lark to playback trials including: approach latency, flyovers, song latency, song rate and alarm call rates. The Frequency data set contains the response of magpie-larks vocal response to playback trials.
DOI: 10.26188/17009417.v1
title: Dickerson et al 2021 Ethology

description: Datasets for Dickerson et al 2021 Male and female Australian magpie-larks respond differently to variation in song frequency (pitch), <i>Ethology. </i>Behavioural dataset contains the response of magpie-lark to playback trials including: approach latency, flyovers, song latency, song rate and alarm call rates. The Frequency data set contains the response of magpie-larks vocal response to playback trials.
DOI: 10.6084/m9.figshare.13570559
title: Data - Easter et al - Aggression-based social learning in zebra finches.zip

description: Data and additional, supplementary material for Easter et al., Aggression-based social learning in the zebra finch (<i>Taeniopygia guttata</i>).<br>In this study, we gathered data on the following types of social interaction between individuals in a population of 53 zebra finches housed in a free-flying aviary: feeding associations, dominance- and subordinate-related interactions, positive interactions, and matings. We introduced a novel foraging task to the population and used Network-Based Diffusion Analysis (NBDA) to establish whether learning events followed networks (or combinations of networks) representing the types of interaction outlined above. <br>To collect dominance-related data, we introduced a small platform with food to isolate any aggressive interactions into an easily observed area. Feeder and dominance data were collected by filming using GoPro cameras. Data on positive interactions and matings were recorded as live observations.<br><br>This dataset contains the R script used to carry out our analysis and all necessary data required. The data includes the following: - Data on visits to two feeders in the aviary, used to establish feeding associations between birds. - Live observations of positive interactions between pairs of birds. - Live observations of matings/nestings. - Dominance-related data (winners and losers of fights). - Data on task solves. - Suspected genders of birds, used as an individual-level variable (in absence of genetic information, we used observations of appearance and behaviour). - Solves of a previous task, the previous year, used as an individual-level variable. - Dominance ranks, used as an individual-level variable.<br>This dataset also includes information on identifying the birds in the population, including guides for how we identified unbanded birds and an Excel document with the IDs of all the birds along with additional information including each birds' matrix number (their position in the generated social matrices). These are located in the "Bird IDs and descriptions" folder.<br>This dataset also includes some of the Outputs obtained from our analysis, including the AIC table generated and the estimates for <i>s</i> and <i>propST </i>parameters (see paper for further information). These are located in the "Outputs" folder.<br>The "_NBDA Script" R file can be used to run the whole analysis. Please ensure R is set to the directory with all the data in.
DOI: 10.5281/zenodo.5701492
title: FW306_05

description: Reads, assembly and bins for FW306_05