cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3174478
title: Datasets: diversity and suitability of existing methods and metrics to quantify species range shifts

description: <i>This dataset shows the literature survey used for analysis in manuscript Yalcin & Leroux (2017).</i><i><br></i><i>Yalcin S, Leroux SJ. Diversity and suitabilityof existing methods and metrics for quantifying speciesrange shifts. Global Ecol Biogeogr. 2017;00:000–000.</i>
DOI: 10.6084/m9.figshare.3174478.v1
title: Diversity and suitability of contemporary methods and metrics to quantify species range shifts

description: <i>This dataset shows the literature survey used for analysis in manuscript Yalcin, S. & Leroux, S.J.</i>
DOI: 10.6084/m9.figshare.3174478.v2
title: Diversity and suitability of contemporary methods and metrics to quantify species range shifts

description: <i>This dataset shows the literature survey used for analysis in manuscript Yalcin, S. & Leroux, S.J.</i>
DOI: 10.6084/m9.figshare.3174478.v3
title: Diversity and suitability of contemporary methods and metrics to quantify species range shifts

description: <i>This dataset shows the literature survey used for analysis in manuscript Yalcin, S. & Leroux, S.J.</i>
DOI: 10.6084/m9.figshare.3173014.v2
title: MH&S Faculty Conference - UoN 2013: Group psychological intervention versus individual psychological intervention for depression in multiple sclerosis: a cochrane protocol

description: Research Poster presented at The University of Nottingham MH&S Faculty Research Forum 2013
DOI: 10.6084/m9.figshare.3174478.v4
title: Diversity and suitability of contemporary methods and metrics to quantify species range shifts

description: <i>This dataset shows the literature survey used for analysis in manuscript Yalcin, S. & Leroux, S.J.</i>
DOI: 10.6084/m9.figshare.3173014
title: MH&S Faculty Conference - UoN 2013: Group psychological intervention versus individual psychological intervention for depression in multiple sclerosis: a cochrane protocol

description: Research Poster presented at The University of Nottingham MH&S Faculty Research Forum 2013
DOI: 10.6084/m9.figshare.3174478.v6
title: Datasets: diversity and suitability of existing methods and metrics to quantify species range shifts

description: <i>This dataset shows the literature survey used for analysis in manuscript Yalcin & Leroux (2017).</i><i><br></i><i>Yalcin S, Leroux SJ. Diversity and suitabilityof existing methods and metrics for quantifying speciesrange shifts. Global Ecol Biogeogr. 2017;00:000–000.</i>
DOI: 10.6084/m9.figshare.3174478.v5
title: Diversity and suitability of existing methods and metrics to quantify species range shifts

description: <i>This dataset shows the literature survey used for analysis in manuscript Yalcin, S. & Leroux, S.J. (2017).</i>
DOI: 10.6084/m9.figshare.3172927
title: APO Policy Online poster

description: This poster the range of services and content availalbe through the APO digital library and repository. <br>
DOI: 10.6084/m9.figshare.3172927.v1
title: APO Policy Online poster

description: This poster the range of services and content availalbe through the APO digital library and repository. <br>
DOI: 10.17029/c08e5505-29f0-4d62-bfba-523efabcf343
title: Dataset for 'Selective liability, regulated digital commerce, and the subversion of product trading bans: the case of elephant ivory'.

description: Data files containing information on the online Ebay sales.
DOI: 10.6084/m9.figshare.3172813
title: Campitelli-Labollita_Datset_Chessplayers&Students

description: This is a dataset of 25 chess players and 25 university students in a number of judgement and decision making tasks, the cognitive reflection test and Tower of London.
DOI: 10.6084/m9.figshare.3172816
title: Critical Success Factors of Innovative Lithuanian Life Sciences Startups

description: The purpose of this thesis is to identify the critical success factors of innovative Lithuanian life sciences start-ups that drives them to commercial success. Literature review identified factors that are critical to the success of technology (or knowledge) intensive start-ups in various ecosystems throughout the World, although there was no specific research made on start-ups’ critical success factors in the field of life sciences. Qualitative research was used to collect empirical data about innovative Lithuanian life sciences start-ups, which are developing new technologies, products or services, generating revenue, have more than one employee and are not experiencing any major financial difficulties. The findings of the research revealed that Lithuanian life sciences start-ups correspond to the global tendencies and same factors affect their operations as any other technology (or knowledge) intensive start-up, however start-ups are heavily dependent on the national and European Union funding opportunities.
DOI: 10.6084/m9.figshare.3172807
title: Forest cover changes due to hydrocarbon extraction disturbance in central Pennsylvania (2004–2010)

description: The state of Pennsylvania has a long history of oil and gas extraction. In recent years with advances in technology such as hydraulic fracturing, hydrocarbon sources that were not profitable in the past are now being exploited. Here, we present an assessment of the cumulative impact of oil and gas extraction activities on the forests of 35 counties in Pennsylvania and their intersecting sub-watersheds between 2004 and 2010. The assessment categorizes counties and sub-watersheds based on the estimated amount of change to forest cover in the area. From the data collected we recognize that although forest cover has not been greatly impacted (with an average loss of percent forest coverage of 0.16% at the county level), landscape structure is affected. Increase in edge forest and decrease in interior forest is evident in many of the counties and sub-watersheds examined. These changes can have a detrimental effect on forest biodiversity and dynamics.
DOI: 10.6084/m9.figshare.3172807.v1
title: Forest cover changes due to hydrocarbon extraction disturbance in central Pennsylvania (2004–2010)

description: The state of Pennsylvania has a long history of oil and gas extraction. In recent years with advances in technology such as hydraulic fracturing, hydrocarbon sources that were not profitable in the past are now being exploited. Here, we present an assessment of the cumulative impact of oil and gas extraction activities on the forests of 35 counties in Pennsylvania and their intersecting sub-watersheds between 2004 and 2010. The assessment categorizes counties and sub-watersheds based on the estimated amount of change to forest cover in the area. From the data collected we recognize that although forest cover has not been greatly impacted (with an average loss of percent forest coverage of 0.16% at the county level), landscape structure is affected. Increase in edge forest and decrease in interior forest is evident in many of the counties and sub-watersheds examined. These changes can have a detrimental effect on forest biodiversity and dynamics.
DOI: 10.6084/m9.figshare.3172756
title: 670 nm treatment following spinal cord injury - JNI

description: Manuscript title: Red LED photobiomodulation reduces pain hypersensitivity and improves sensorimotor function following mild T10 hemi-contusion spinal cord injury. <br><br>The data set comprises an excel spreadsheet with each tab containing all the data for each figure of the manuscript. <br>
DOI: 10.6084/m9.figshare.3172744
title: Optimization of International Food Distribution

description: This paper describes an optimization model that serves as a foundation for solving world hunger, by minimizing the cost of food distribution.
DOI: 10.6084/m9.figshare.3172756.v1
title: 670 nm treatment following spinal cord injury

description: Manuscript title: Red LED photobiomodulation reduces pain hypersensitivity and improves sensorimotor function following mild T10 hemi-contusion spinal cord injury. <br><br>The data set comprises an excel spreadsheet with each tab containing all the data for each figure of the manuscript. <br>
DOI: 10.6084/m9.figshare.3172756.v3
title: 670 nm treatment following spinal cord injury - JNI

description: Manuscript title: Red LED photobiomodulation reduces pain hypersensitivity and improves sensorimotor function following mild T10 hemi-contusion spinal cord injury. <br><br>The data set comprises an excel spreadsheet with each tab containing all the data for each figure of the manuscript. <br>
DOI: 10.6084/m9.figshare.3172756.v2
title: 670 nm treatment following spinal cord injury

description: Manuscript title: Red LED photobiomodulation reduces pain hypersensitivity and improves sensorimotor function following mild T10 hemi-contusion spinal cord injury. <br><br>The data set comprises an excel spreadsheet with each tab containing all the data for each figure of the manuscript. <br>
DOI: 10.6084/m9.figshare.3172663
title: Real-Time Tracking of BODIPY-C12 Long-Chain Fatty Acid in Human Term Placenta Reveals Unique Lipid Dynamics in Cytotrophoblast Cells

description: Figures from PONE-D-16-00993R1
DOI: 10.6084/m9.figshare.3172696
title: DATASET for the paper "Visual mislocalization of moving objects in an audiovisual event"

description: Data from the article titled "Visual mislocalization of moving objects in an audiovisual event" by Kawachi, Y., published in PLOS ONE. <br><br>
DOI: 10.6084/m9.figshare.3172660
title: Too Big to Share? Scaling Up Knowledge Transfer Workflows in Computational Sciences

description: Poster for the Force 16 conference to be held in Portland, Oregon, April 2016.
DOI: 10.6084/m9.figshare.3172696.v1
title: DATASET for the paper "Visual mislocalization of moving objects in an audiovisual event"

description: Data from the article titled "Visual mislocalization of moving objects in an audiovisual event" by Kawachi, Y., published in PLOS ONE. <br><br>
DOI: 10.6084/m9.figshare.3172660.v1
title: Too Big to Share? Scaling Up Knowledge Transfer Workflows in Computational Sciences

description: Poster for the Force 16 conference to be held in Portland, Oregon, April 2016.
DOI: 10.6084/m9.figshare.3172663.v2
title: Real-Time Tracking of BODIPY-C12 Long-Chain Fatty Acid in Human Term Placenta Reveals Unique Lipid Dynamics in Cytotrophoblast Cells

description: Figures from PONE-D-16-00993R1
DOI: 10.6084/m9.figshare.3172663.v1
title: PONE-D-16-00993R1

description: Figures from PONE-D-16-00993R1
DOI: 10.6084/m9.figshare.3172636
title: Coupled Design Optimization of Propeller and Flying Wing

description: Python based optimization program for coupled optimization of a propeller in CCBlade (a blade element momentum theory code) and a flying wing in APAME (3D panel method solver)<br>See the PROP_WING_OPT_readme for some instructions
DOI: 10.6084/m9.figshare.3172627
title: Radiological characterization of cerebral phenotype in newborn microcephaly cases from 2015 outbreak in Brazil

description: Brazil is facing, since October of 2015, an outbreak of microcephalic fetuses. This outbreak is correlated with the beginning of circulation of Zika virus (ZIKV) in the country. Although it is clear that the size of the head is diminished in these fetuses, the brain phenotype associated with these malformations is unknown. We collected computed tomography images of the microcephaly cases from the region of Natal, Rio Grande do Norte, from September 2015 to February 2016. The CT acquisition was performed by a multidetector equipment, Philips Brilliance 64 (Philips Medical Systems; Cleveland, EUA), with tomographic section thickness of 1.0 mm, without administration of iodinated contrast. The protocol for this study was reviewed and approved by the Universidade Federal do Rio Grande do Norte Ethics Committee, certificate of approval CAAE 53111416.7.0000.5537. Role of funding source: The funding agencies had no participation in this work. The microcephalies derived from the current outbreak are associated with intracerebral calcifications, malformation of the ventricular system, migratory disorders in the telencephalon and, in a lower frequency, malformation of the cerebellum and brainstem. The characteristics here described are not usually found in other types of microcephaly. We suggest that this work can be used as a guideline to identify microcephaly cases associated to the current outbreak.
DOI: 10.6084/m9.figshare.3172591
title: Sanger&Kirkpatrick_Biotropica.xlsx

description: Data for paper "Fine partitioning of epiphyte habitat within Johansson zones in tropical Australian rainforest trees" <b></b>
DOI: 10.6084/m9.figshare.3172627.v2
title: Radiological characterization of cerebral phenotype in newborn microcephaly cases from 2015 outbreak in Brazil

description: Brazil is facing, since October of 2015, an outbreak of microcephalic fetuses. This outbreak is correlated with the beginning of circulation of Zika virus (ZIKV) in the country. Although it is clear that the size of the head is diminished in these fetuses, the brain phenotype associated with these malformations is unknown. We collected computed tomography images of the microcephaly cases from the region of Natal, Rio Grande do Norte, from September 2015 to February 2016. The CT acquisition was performed by a multidetector equipment, Philips Brilliance 64 (Philips Medical Systems; Cleveland, EUA), with tomographic section thickness of 1.0 mm, without administration of iodinated contrast. The protocol for this study was reviewed and approved by the Universidade Federal do Rio Grande do Norte Ethics Committee, certificate of approval CAAE 53111416.7.0000.5537. Role of funding source: The funding agencies had no participation in this work. The microcephalies derived from the current outbreak are associated with intracerebral calcifications, malformation of the ventricular system, migratory disorders in the telencephalon and, in a lower frequency, malformation of the cerebellum and brainstem. The characteristics here described are not usually found in other types of microcephaly. We suggest that this work can be used as a guideline to identify microcephaly cases associated to the current outbreak.
DOI: 10.6084/m9.figshare.3172636.v1
title: Coupled Design Optimization of Propeller and Flying Wing

description: Python based optimization program for coupled optimization of a propeller in CCBlade (a blade element momentum theory code) and a flying wing in APAME (3D panel method solver)
DOI: 10.6084/m9.figshare.3172657.v2
title: Prepare a pre/post print of your documents for advertisement

description: With overwhelming thousands of online journals daily, many scholarly articles simply never reach their intended audience and consequently fail to generate the impact they deserve. Traditionally, scholarly publishers ensured the visibility of an authors’ work by circulating print journals to targeted readers. But fewer people are reading print journals anymore and as content continues to migrate from print to online — how can researchers optimize electronic distribution of content? This presentation, lead you to prepare a pre/post print of your documents for online presence and advertisement.<br>
DOI: 10.6084/m9.figshare.3172591.v1
title: Sanger&Kirkpatrick_Biotropica.xlsx

description: Data for paper "Fine partitioning of epiphyte habitat within Johansson zones in tropical Australian rainforest trees" <b></b>
DOI: 10.6084/m9.figshare.3172636.v2
title: Coupled Design Optimization of Propeller and Flying Wing

description: Python based optimization program for coupled optimization of a propeller in CCBlade (a blade element momentum theory code) and a flying wing in APAME (3D panel method solver)<br>See the PROP_WING_OPT_readme for some instructions
DOI: 10.6084/m9.figshare.3172573.v1
title: A new caenagnathid (Dinosauria: Oviraptorosauria) from the Horseshoe Canyon Formation of Alberta, Canada, and a reevaluation of the relationships of Caenagnathidae

description: Our understanding of caenagnathids has benefited from recent discoveries, including nearly complete skeletons from the Hell Creek Formation of Montana. However, their phylogenetic relationships remain unclear. A new specimen from the Horseshoe Canyon Formation of Alberta has implications for the phylogeny and paleobiology of these creatures. The partial skeleton is articulated and includes a mandible, a full cervical and dorsal series of vertebrae, a right pectoral girdle and arm, a sternum, gastralia, a partial ilium, and a partial hind limb. The mandible is edentulous and the articular ridge is intermediate in form between <i>Caenagnathus collinsi</i> and <i>Chirostenotes pergracilis</i>. The neck is long and composed of at least 11 well-pneumatized cervical vertebrae with fused cervical ribs. The dorsal ribs have finger-like uncinate processes dissimilar in shape to those of other oviraptorosaurs. The pectoral girdle is large and typically maniraptoran, except that the glenoid of the scapulocoracoid faces laterally instead of posteroventrally. The arm is well muscled and can be interpreted to have been a pennibrachium, as indicated by ulnar papillae on the ulna. The manus is characterized by a short first metacarpal but an elongate phalanx I-1 and oviraptorid-like phalangeal proportions in the second digit. These and other features indicate that the specimen represents a new taxon, <i>Apatoraptor pennatus</i>, gen. et sp. nov. Phylogenetic analysis resolves the complicated relationships of Caenagnathidae and allows the evolution of display features to be traced throughout Oviraptorosauria. http://zoobank.org/urn:lsid:zoobank.org:pub:122957D7-F65F-4A2C-86AF-386AE8AAF2C4 SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Funston, G. F., and P. J. Currie. 2016. A new caenagnathid (Dinosauria: Oviraptorosauria) from the Horseshoe Canyon Formation of Alberta, Canada, and a reevaluation of the relationships of Caenagnathidae. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2016.1160910.
DOI: 10.18462/iir.rankine.2020.1154
title: Dynamic simulation of a PV driven hydraulic based vapour-compression heat pump.
DOI: 10.6084/m9.figshare.3172543
title: Excess sphingomyelin disturbs ATG9A trafficking and autophagosome closure

description: Sphingomyelin is an essential cellular lipid that traffics between plasma membrane and intracellular organelles until directed to lysosomes for SMPD1 (sphingomyelin phosphodiesterase 1)-mediated degradation. Inactivating mutations in the <i>SMPD1</i> gene result in Niemann-Pick diseases type A and B characterized by sphingomyelin accumulation and severely disturbed tissue homeostasis. Here, we report that sphingomyelin overload disturbs the maturation and closure of autophagic membranes. Niemann-Pick type A patient fibroblasts and <i>SMPD1</i>-depleted cancer cells accumulate elongated and unclosed autophagic membranes as well as abnormally swollen autophagosomes in the absence of normal autophagosomes and autolysosomes. The immature autophagic membranes are rich in WIPI2, ATG16L1 and MAP1LC3B but display reduced association with ATG9A. Contrary to its normal trafficking between plasma membrane, intracellular organelles and autophagic membranes, ATG9A concentrates in transferrin receptor-positive juxtanuclear recycling endosomes in SMPD1-deficient cells. Supporting a causative role for ATG9A mistrafficking in the autophagy defect observed in SMPD1-deficient cells, ectopic ATG9A effectively reverts this phenotype. Exogenous C12-sphingomyelin induces a similar juxtanuclear accumulation of ATG9A and subsequent defect in the maturation of autophagic membranes in healthy cells while the main sphingomyelin metabolite, ceramide, fails to revert the autophagy defective phenotype in <i>SMPD1</i>-deficient cells. Juxtanuclear accumulation of ATG9A and defective autophagy are also evident in tissues of <i>smpd1</i>-deficient mice with a subsequent inability to cope with kidney ischemia-reperfusion stress. These data reveal sphingomyelin as an important regulator of ATG9A trafficking and maturation of early autophagic membranes.
DOI: 10.6084/m9.figshare.3172543.v1
title: Excess sphingomyelin disturbs ATG9A trafficking and autophagosome closure

description: Sphingomyelin is an essential cellular lipid that traffics between plasma membrane and intracellular organelles until directed to lysosomes for SMPD1 (sphingomyelin phosphodiesterase 1)-mediated degradation. Inactivating mutations in the <i>SMPD1</i> gene result in Niemann-Pick diseases type A and B characterized by sphingomyelin accumulation and severely disturbed tissue homeostasis. Here, we report that sphingomyelin overload disturbs the maturation and closure of autophagic membranes. Niemann-Pick type A patient fibroblasts and <i>SMPD1</i>-depleted cancer cells accumulate elongated and unclosed autophagic membranes as well as abnormally swollen autophagosomes in the absence of normal autophagosomes and autolysosomes. The immature autophagic membranes are rich in WIPI2, ATG16L1 and MAP1LC3B but display reduced association with ATG9A. Contrary to its normal trafficking between plasma membrane, intracellular organelles and autophagic membranes, ATG9A concentrates in transferrin receptor-positive juxtanuclear recycling endosomes in SMPD1-deficient cells. Supporting a causative role for ATG9A mistrafficking in the autophagy defect observed in SMPD1-deficient cells, ectopic ATG9A effectively reverts this phenotype. Exogenous C12-sphingomyelin induces a similar juxtanuclear accumulation of ATG9A and subsequent defect in the maturation of autophagic membranes in healthy cells while the main sphingomyelin metabolite, ceramide, fails to revert the autophagy defective phenotype in <i>SMPD1</i>-deficient cells. Juxtanuclear accumulation of ATG9A and defective autophagy are also evident in tissues of <i>smpd1</i>-deficient mice with a subsequent inability to cope with kidney ischemia-reperfusion stress. These data reveal sphingomyelin as an important regulator of ATG9A trafficking and maturation of early autophagic membranes.
DOI: 10.6084/m9.figshare.3172540
title: Epigenetic and genetic burden measures are associated with tumor characteristics in invasive breast carcinoma

description: The development and progression of invasive breast cancer is characterized by alterations to the genome and epigenome. However, the relationship between breast tumor characteristics, disease subtypes, and patient outcomes with the cumulative burden of these molecular alterations are not well characterized. We determined the average departure of tumor DNA methylation from adjacent normal breast DNA methylation using Illumina 450K methylation data from 700 invasive breast tumors and 90 adjacent normal breast tissues in The Cancer Genome Atlas. From this we generated a novel summary measure of altered DNA methylation, the DNA methylation dysregulation index (MDI), and examined the relation of MDI with tumor characteristics and summary measures that quantify cumulative burden of genetic mutation and copy number alterations. Our analysis revealed that MDI was significantly associated with tumor stage (<i>P</i> = 0.017). Across invasive breast tumor subtypes we observed significant differences in genome-wide DNA MDIs (<i>P</i> = 4.9E–09) and in a fraction of the genome with copy number alterations (FGA) (<i>P</i> = 4.6E–03). Results from a linear regression adjusted for subject age, tumor stage, and estimated tumor purity indicated a positive significant association of MDI with both MCB and FGA (<i>P</i> = 0.036 and <i>P</i> &lt; 2.2E–16). A recursively partitioned mixture model of all 3 somatic alteration burden measures resulted in classes of tumors whose epigenetic and genetic burden profile were associated with the PAM50 subtype and mutations in <i>TP53, PIK3CA, and CDH1</i>. Together, our work presents a novel framework for characterizing the epigenetic burden and adds to the understanding of the aggregate impact of epigenetic and genetic alterations in breast cancer.