cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21335/nmdc-762320451
title: Water column data on dissolved inorganic nutrients (nitrite, nitrate, phosphate and silicic acid) from Process (P) stations during the Nansen LEGACY seasonal cruise Q1, 2021703, with R.V. Kronprins Haakon, 4-17 March 2021

description: The cruise 2021703 aboard the Research Vessel Kronprins Haakon is the seasonal cruise Q1 of the project the Nansen LEGACY. LEGACY is the Norwegian Arctic research community’s joint effort to establish a holistic understanding of a changing marine Arctic climate and ecosystem. Water column temperature and salinity profiles were obtained with a conductivity-temperature-depth (CTD) sensor system Sea-Bird SBE 911+ mounted on a General Oceanics rosette sampler equipped with 24 Niskin bottles used for seawater sampling of chemical variables in the water column. Samples for the determination of dissolved inorganic nutrients were collected from full water column at a total of 7 stations in the northern Barents Sea. The seawater samples were collected from Niskin bottles in 20 ml plastic HDPE vials (rinsed three times) and preserved with 250 µL chloroform and stored +4C and dark until post-cruise analysis of nitrite (NO2), nitrate (NO3-), phosphate (PO43-), and silicate (Si(OH)4), following standard methods (Grasshoff et al., 2009) at the chemical laboratory at Institute of Marine Research, Bergen, Norway. Three replicates were analyzed for each sample. The detection limits are 0.06 µmol/L, 0.5 µmol/L, 0.06 µmol/L and 0.7 µmol/L for NO2, NO3-, PO43-, and Si(OH)4, respectively. The study was funded by the Research Council of Norway through the project The Nansen LEGACY (RCN #276730).
DOI: 10.21335/nmdc-282686035
title: Flow cytometry measurements (abundance of virus, bacteria and small protists (primarily &lt;20μm)) during Nansen Legacy cruise 2021703 (from March 2nd to 24th in 2021) in the Northern Barents Sea

description: This dataset is a collection of flow cytometry measurements (abundance of virus, bacteria and small protists (primarily &lt;20μm)) taken as part of the Nansen Legacy project (www.arvenetternansen.com), as part of the '2021 Seasonal Study Q1' cruise (2021703; from March 2nd to 24th in 2021). The data are collected from a CTD-rosette with Niskin bottles from stations located in the Northern Barents Sea.
DOI: 10.6084/m9.figshare.11895822.v1
title: Additional file 8 of Whole genome sequencing and comparative genomic analysis of oleaginous red yeast Sporobolomyces pararoseus NGR identifies candidate genes for biotechnological potential and ballistospores-shooting

description: Additional file 8. All gene annotation information resulted from genome analysis.
DOI: 10.6084/m9.figshare.11895885
title: Additional file 19 of Comparative analysis of basic helix–loop–helix gene family among Brassica oleracea, Brassica rapa, and Brassica napus

description: Additional file 19: Table S6. Nonsynonymous and synonymous substitution rates of orthologous bHLH genes between A. thaliana and B. rapa
DOI: 10.6084/m9.figshare.11895909
title: Additional file 23 of Comparative analysis of basic helix–loop–helix gene family among Brassica oleracea, Brassica rapa, and Brassica napus

description: Additional file 23 Table S10. Relative expression levels of 20 BolbHLH, 20 BrabHLH, and 20 BnabHLH genes under ABA and JA treatments
DOI: 10.21335/nmdc-2099951995
title: Flow cytometry measurements (abundance of virus, bacteria and small protists (primarily &lt;20μm)) during Nansen Legacy cruise 2019711 (from November 28th to December 17th in 2019) in the Northern Barents Sea

description: This dataset is a collection of flow cytometry measurements (abundance of virus, bacteria and small protists (primarily &lt;20μm)) taken as part of the Nansen Legacy project (www.arvenetternansen.com), as part of the '2019 Seasonal Study Q4' cruise (2019711; from November 28th to December 17th in 2019). The data are collected from a CTD-rosette with Niskin bottles from stations located in the Northern Barents Sea.
DOI: 10.6084/m9.figshare.11895825.v1
title: Additional file 9 of Whole genome sequencing and comparative genomic analysis of oleaginous red yeast Sporobolomyces pararoseus NGR identifies candidate genes for biotechnological potential and ballistospores-shooting

description: Additional file 9. Genome annotations file of NGR.
DOI: 10.6084/m9.figshare.11895909.v1
title: Additional file 23 of Comparative analysis of basic helix–loop–helix gene family among Brassica oleracea, Brassica rapa, and Brassica napus

description: Additional file 23 Table S10. Relative expression levels of 20 BolbHLH, 20 BrabHLH, and 20 BnabHLH genes under ABA and JA treatments
DOI: 10.21335/nmdc-1472517325
title: Water column data on dissolved inorganic nutrients (nitrite, nitrate, phosphate and silicic acid) from the Nansen LEGACY seasonal cruise Q3, 2019706, with R.V. Kronprins Haakon, 5-27 August 2019

description: The cruise 2019706 aboard the Research Vessel Kronprins Haakon is the seasonal cruise Q3 of the project the Nansen LEGACY. LEGACY is the Norwegian Arctic research community’s joint effort to establish a holistic understanding of a changing marine Arctic climate and ecosystem. Water column temperature and salinity profiles were obtained with a conductivity-temperature-depth (CTD) sensor system Sea-Bird SBE 911+ mounted on a General Oceanic rosette sampler equipped with 24 Niskin bottles used for seawater sampling of chemical variables in the water column. Samples for determination of dissolved inorganic nutrients were collected from full water column at a total of 18 stations in the northern Barents Sea. The seawater samples were collected from Niskin bottles in 20 ml plastic HDPE vials (rinsed three times) and preserved with 250 µL chloroform and stored +4C and dark until post-cruise analysis of nitrite, NO2, nitrate, NO3-, phosphate, PO43-, and silicate, Si(OH)4, following standard methods (Grasshoff et al., 2009) at the chemical laboratory at Institute of Marine Research, Bergen, Norway. Three replicates were analyzed for each sample. The detection limits are 0.06 µmol/L, 0.5 µmol/L, 0.06 µmol/L and 0.7 µmol/L for NO2, NO3-, PO43-, and Si(OH)4, respectively. The study was funded by the Research Council of Norway through the project The Nansen LEGACY (RCN #276730).
DOI: 10.6084/m9.figshare.11895870
title: Additional file 17 of Comparative analysis of basic helix–loop–helix gene family among Brassica oleracea, Brassica rapa, and Brassica napus

description: Additional file 17: Table S4. Identified bHLH genes in B. rapa with 21 newly identified BrabHLH genes and their molecular characteristics. The genes with yellow background were newly identified BrabHLH genes in this study, while the others were identified in a previous study (Song et al., 2014).
DOI: 10.6084/m9.figshare.11895894
title: Additional file 21 of Comparative analysis of basic helix–loop–helix gene family among Brassica oleracea, Brassica rapa, and Brassica napus

description: Additional file 21: Table S8. Subcellular location predictions of partial bHLH proteins
DOI: 10.6084/m9.figshare.11895894.v1
title: Additional file 21 of Comparative analysis of basic helix–loop–helix gene family among Brassica oleracea, Brassica rapa, and Brassica napus

description: Additional file 21: Table S8. Subcellular location predictions of partial bHLH proteins
DOI: 10.21335/nmdc-416151559
title: Concentrations of total mercury, total methylated mercury, and selected trace elements in the northern Barents Sea as part of the Nansen Legacy project, Cruise 2019706 Q3

description: This dataset includes concentrations of total mercury (THg), total methylated mercury (MeHg), total lead (TPb), total manganese (TMn), and dissolved manganese (DMn) in seawater. Samples were collected in August as part of cruise 2019706, Q3, in the northern Barents Sea as part of the Nansen Legacy project. Concentrations were measured at seven different stations using GOFLO bottles attached sequentially and sampled using trace metal clean techniques. THg, MeHg, TPb, and TMn were collected unfiltered. DMn was filtered through a 0.2µm Sartorius Sartobran filter. Additional samples deeper than 500m were collected at stations P6 and P7 using Niskin bottles attached to a rosette. THg was measured by cold vapor atomic fluorescence spectrometry (CVAFS). MeHg was measured by species-specific isotope dilution gas chromatography sector field inductively coupled plasma mass spectrometry (ID-GC-SF-ICP-MS). TPb, TMn, and DMn were measured by ICP-MS.
DOI: 10.6084/m9.figshare.11895879
title: Additional file 18 of Comparative analysis of basic helix–loop–helix gene family among Brassica oleracea, Brassica rapa, and Brassica napus

description: Additional file 18: Table S5. Nonsynonymous and synonymous substitution rates of orthologous bHLH genes between B. oleracea and A. thaliana
DOI: 10.6084/m9.figshare.11895858
title: Additional file 14 of Comparative analysis of basic helix–loop–helix gene family among Brassica oleracea, Brassica rapa, and Brassica napus

description: Additional file 14: Table S1. Identified bHLH genes in B. oleracea and their molecular characteristics
DOI: 10.6084/m9.figshare.11895921.v1
title: Additional file 25 of Comparative analysis of basic helix–loop–helix gene family among Brassica oleracea, Brassica rapa, and Brassica napus

description: Additional file 25 Table S12. Primers of selected bHLH genes for qRT-PCR in B. oleracea
DOI: 10.21335/nmdc-487023368
title: Water column data on dissolved inorganic nutrients (nitrite, nitrate, phosphate and silicic acid) from Process (P) stations during the Nansen LEGACY seasonal cruise Q2, 2021704, with R.V. Kronprins Haakon, 30 April - 18 May 2021

description: The cruise 2021704 aboard the Research Vessel Kronprins Haakon is the seasonal cruise Q2 of the project the Nansen LEGACY. LEGACY is the Norwegian Arctic research community’s joint effort to establish a holistic understanding of a changing marine Arctic climate and ecosystem. Water column temperature and salinity profiles were obtained with a conductivity-temperature-depth (CTD) sensor system Sea-Bird SBE 911+ mounted on a General Oceanics rosette sampler equipped with 24 Niskin bottles used for seawater sampling of chemical variables in the water column. Samples for the determination of dissolved inorganic nutrients were collected from full water column at a total of 7 stations in the northern Barents Sea. The seawater samples were collected from Niskin bottles in 20 ml plastic HDPE vials (rinsed three times) and preserved with 250 µL chloroform and stored +4C and dark until post-cruise analysis of nitrite (NO2), nitrate (NO3-), phosphate (PO43-), and silicate (Si(OH)4), following standard methods (Grasshoff et al., 2009) at the chemical laboratory at Institute of Marine Research, Bergen, Norway. Three replicates were analyzed for each sample. The detection limits are 0.06 µmol/L, 0.5 µmol/L, 0.06 µmol/L and 0.7 µmol/L for NO2, NO3-, PO43-, and Si(OH)4, respectively. The study was funded by the Research Council of Norway through the project The Nansen LEGACY (RCN #276730).
DOI: 10.6084/m9.figshare.11895858.v1
title: Additional file 14 of Comparative analysis of basic helix–loop–helix gene family among Brassica oleracea, Brassica rapa, and Brassica napus

description: Additional file 14: Table S1. Identified bHLH genes in B. oleracea and their molecular characteristics
DOI: 10.6084/m9.figshare.11895867.v1
title: Additional file 16 of Comparative analysis of basic helix–loop–helix gene family among Brassica oleracea, Brassica rapa, and Brassica napus

description: Additional file 16: Table S3. Identified bHLH genes in the CC genome of B. napus and their molecular characteristics
DOI: 10.6084/m9.figshare.16614488
title: Additional file 2 of Comprehensive analysis of lysine crotonylation modification in patients with chronic renal failure

description: Additional file 2: Table S2. Significantly differential expression lysine crotonylation between the CRF and NC.
DOI: 10.17188/1196095
title: Materials Data on FeCo by Materials Project

description: FeCo is Tetraauricupride structured and crystallizes in the cubic Pm-3m space group. The structure is three-dimensional. Fe is bonded in a body-centered cubic geometry to eight equivalent Co atoms. All Fe–Co bond lengths are 2.46 Å. Co is bonded in a body-centered cubic geometry to eight equivalent Fe atoms.
DOI: 10.21335/nmdc-39569968
title: Flow cytometry measurements (abundance of virus, bacteria and small protists (primarily &lt;20μm)) during Nansen Legacy cruise 2019706 (from August 5th to 27th in 2019) in the Northern Barents Sea

description: This dataset is a collection of flow cytometry measurements (abundance of virus, bacteria and small protists (primarily &lt;20μm)) taken as part of the Nansen Legacy project (www.arvenetternansen.com), as part of the '2019 Seasonal Study Q3' cruise (2019706; from August 5th to 27th in 2019). The data are collected from a CTD-rosette with Niskin bottles from stations located in the Northern Barents Sea.
DOI: 10.6084/m9.figshare.11895891.v1
title: Additional file 20 of Comparative analysis of basic helix–loop–helix gene family among Brassica oleracea, Brassica rapa, and Brassica napus

description: Additional file 20: Table S7. Nonsynonymous and synonymous substitution rates of orthologous bHLH genes in B. napus
DOI: 10.21335/nmdc-277392634
title: Flow cytometry measurements (abundance of virus, bacteria and small protists (primarily &lt;20μm)) during Nansen Legacy cruise 2021704 (from April 27th to May 20th in 2021) in the Northern Barents Sea

description: This dataset is a collection of flow cytometry measurements (abundance of virus, bacteria and small protists (primarily &lt;20μm)) taken as part of the Nansen Legacy project (www.arvenetternansen.com), as part of the '2021 Seasonal Study Q2' cruise (2021704; from April 27th to May 20th in 2021). The data are collected from a CTD-rosette with Niskin bottles from stations located in the Northern Barents Sea.
DOI: 10.6084/m9.figshare.154685
title: Figure 7 raw data: Effect of variable exposure to PTHrP (1-36) on bone nodules and AP activity in high plating density cultures.

description: RC cell cultures were maintained in control medium for 21 days (C/C), maintained in control medium and changed to medium containing PTHrP (1-36) on day 11 (C/P), treated with 100 nM PTHrP (1-36) for 21 days (P/P), or exposed to 100 nM PTHrP (1-36) for 10 days and then transferred to control medium on day 11 (P/C). The number of bone nodules (A) and AP activity (B) were determined on day 21.
DOI: 10.5285/908f84ec-d20c-7c88-e053-6c86abc08fda
title: Abundance of phytoplankton, heterotrophic nanoflagellates and bacteria through the water column at time series station L4 in the Western English Channel, 2007-2017.

description: This dataset contains depth profiles of the mean abundance of groups of plankton as cells per millilitre, measured using flow cytometry from the long-term sampling station, L4 (50 15.0'N; 4 13.0'W) situated off the south-west coast of England, United Kingdom. The data were collected between 23rd April 2007 and 18th December 2017. The groups quantified are divided into phytoplankton and heterotrophs. Phytoplankton groups quantified are: Synechococcus sp. (cyanobacteria)(Syn), picoeukaryotes (smaller than 2 µm) (Peuk), cryptophytes (Crypto), coccolithophores (Cocco), small dinoflagellates (&lt;20 µm) (Dino), <em>Phaeocystis sp.</em> (Pcystis) and nanoeukaryotes (Neuk) not already mentioned (2-20 µm). Heterotrophs quantified are: heterotrophic nanoflagellates (HNAN), bacteria with relatively high nucleic acid content (HNA) and bacteria with relatively low DNA (LNA). Samples were collected and analysed in duplicate (HNAN and some heterotrophic bacteria) or triplicate (phytoplankton and some heterotrophic bacteria) from 2 m, 10 m, 25 m and 50 m depth. In 2007 the Secchi depth was sampled instead of the 10 m depth. NOTE: In 2013 an extra column appears in the abundance section and in the standard deviation section. The columns are labelled 'Pnitz'; possibly the chain-forming diatom Pseudo-nitzschia delicatissima. It is also present in 2011 and 2012 where the samples were run using the newest flow cytometer at PML – data still to be supplied. Discrimination is down to better measurement of forward light scatter with the new flow cytometer (a BD Accuri C6).
DOI: 10.6084/m9.figshare.11895927.v1
title: Additional file 26 of Comparative analysis of basic helix–loop–helix gene family among Brassica oleracea, Brassica rapa, and Brassica napus

description: Additional file 26: Table S13. Primers of selected bHLH genes for qRT-PCR in B. rapa
DOI: 10.6084/m9.figshare.11895933
title: Additional file 27 of Comparative analysis of basic helix–loop–helix gene family among Brassica oleracea, Brassica rapa, and Brassica napus

description: Additional file 27: Table S14. Primers of selected bHLH genes for qRT-PCR in B. napus
DOI: 10.6084/m9.figshare.11895933.v1
title: Additional file 27 of Comparative analysis of basic helix–loop–helix gene family among Brassica oleracea, Brassica rapa, and Brassica napus

description: Additional file 27: Table S14. Primers of selected bHLH genes for qRT-PCR in B. napus
DOI: 10.6084/m9.figshare.16614503
title: Additional file 4 of Comprehensive analysis of lysine crotonylation modification in patients with chronic renal failure

description: Additional file 4: Table S4. GO annotation detail of the crotonylated proteins.
DOI: 10.17188/1312984
title: Materials Data on W by Materials Project

description: W is Tungsten structured and crystallizes in the monoclinic P2_1/m space group. The structure is three-dimensional. W is bonded in a distorted body-centered cubic geometry to eight equivalent W atoms. There are a spread of W–W bond distances ranging from 2.74–2.77 Å.
DOI: 10.6084/m9.figshare.11895921
title: Additional file 25 of Comparative analysis of basic helix–loop–helix gene family among Brassica oleracea, Brassica rapa, and Brassica napus

description: Additional file 25 Table S12. Primers of selected bHLH genes for qRT-PCR in B. oleracea
DOI: 10.6084/m9.figshare.16614482.v1
title: Additional file 1 of Comprehensive analysis of lysine crotonylation modification in patients with chronic renal failure

description: Additional file 1: Table S1. Detailed information for all identified crotonylated peptides and their corresponding proteins.
DOI: 10.6084/m9.figshare.16614506.v1
title: Additional file 5 of Comprehensive analysis of lysine crotonylation modification in patients with chronic renal failure

description: Additional file 5: Table S5. GO-based enrichment analysis of crotonylated proteins in terms of cellular component, molecular function, and biological process.
DOI: 10.6084/m9.figshare.11895915.v1
title: Additional file 24 of Comparative analysis of basic helix–loop–helix gene family among Brassica oleracea, Brassica rapa, and Brassica napus

description: Additional file 24: Table S11. Primer sequences of selected genes for subcellular localization analysis
DOI: 10.6084/m9.figshare.16614488.v1
title: Additional file 2 of Comprehensive analysis of lysine crotonylation modification in patients with chronic renal failure

description: Additional file 2: Table S2. Significantly differential expression lysine crotonylation between the CRF and NC.
DOI: 10.6084/m9.figshare.16614494
title: Additional file 3 of Comprehensive analysis of lysine crotonylation modification in patients with chronic renal failure

description: Additional file 3: Table S3. The seven motifs retrieved from lysines crotonylated peptides.
DOI: 10.5285/c9386b5c-b459-782f-e053-6c86abc0d129
title: Phytoplankton taxonomic abundance and biomass time-series at Plymouth Station L4 in the Western English Channel, 1992-2020.

description: The Station L4 phytoplankton time-series (Widdicombe <em>et al</em> 2010) contains taxa-specific and total functional group abundance (cells mL<sup>-1</sup>) and biomass (mgC m<sup>-3</sup>) data collected from the Western Channel Observatory's Station L4 monitoring site (50°15.0'N; 4°13.0'W), situated off the south-west coast of England, United Kingdom. Samples have been collected weekly (weather permitting) from the 10m depth since October 1992. Note the time of collection is estimated (local time) where CTD data are not available, and a gap in sampling occurred between October 1994-June 1995. Paired 200 mL water samples are collected using a 10 L Niskin bottle attached to a CTD and are fixed in acid Lugol's iodine (Throndsen, 1978) for enumerating all phytoplankton cells &gt;2 µm and neutral formaldehyde for enumerating coccolithophores. Samples are analysed at Plymouth Marine Laboratory according to the Utermöhl counting technique (Utermöhl, 1958) and since 2016, these methods follow the British and European standard document "Water quality - Guidance standard for routine microscopic surveys of phytoplankton using inverted microscopy (Utermöhl technique)" (BS EN 15204:2006). Individual taxa are grouped into Diatoms, Dinoflagellates, Coccolithophores, Flagellates, Phaeocytis and Ciliates and these pooled data precede the individual taxa-specific data. Abundance of each taxa (cells mL<sup>-1</sup>) are calculated according to the number of individuals per unit volume of sub-sample analysed. Mean cell dimensions (µm) of each taxa have been estimated using digital measurements, calibrated against an ocular micrometer and converted to biovolume assuming appropriate geometric shapes (e.g. Olenina <em>et al</em> 2006). Cell biovolumes are converted to carbon (pgC cell<sup>-1</sup>) using the formulae of Menden-Deuer and Lessard (2000). Two analysts have generated the data since 1992 and in 2005 more ciliates were identified to species level hence the increase in the number of taxa. Please read the taxa-specific metadata file for information on individual biovolume and carbon values, identification consistency and data quality issues.<br>It is encouraged that users of these data should please quote the DOI and maintain contact with the data originators to prevent misuse or misunderstanding of this complex data set. Informing originators of use of the data will also help justify value for money to funders. If the data form a major part of a study, the originators would also appreciate more involvement to ensure that the source data and their caveats are interpreted correctly.
DOI: 10.6084/m9.figshare.16614512
title: Additional file 6 of Comprehensive analysis of lysine crotonylation modification in patients with chronic renal failure

description: Additional file 6: Table S6. KEGG pathway-based enrichment analysis of crotonylated proteins.
DOI: 10.6084/m9.figshare.16614512.v1
title: Additional file 6 of Comprehensive analysis of lysine crotonylation modification in patients with chronic renal failure

description: Additional file 6: Table S6. KEGG pathway-based enrichment analysis of crotonylated proteins.
DOI: 10.17188/1187823
title: Materials Data on Al2O3 by Materials Project

description: Al2O3 is Corundum structured and crystallizes in the trigonal R-3c space group. The structure is three-dimensional. Al3+ is bonded to six equivalent O2- atoms to form a mixture of corner, edge, and face-sharing AlO6 octahedra. The corner-sharing octahedra tilt angles range from 48–60°. There is three shorter (1.87 Å) and three longer (1.99 Å) Al–O bond length. O2- is bonded to four equivalent Al3+ atoms to form a mixture of distorted corner and edge-sharing OAl4 trigonal pyramids.
DOI: 10.6084/m9.figshare.16614518.v1
title: Additional file 7 of Comprehensive analysis of lysine crotonylation modification in patients with chronic renal failure

description: Additional file 7: Table S7. Protein domain enrichment analysis of crotonylated proteins.
DOI: 10.6084/m9.figshare.11896140
title: Additional file 2 of Mutation screening of the USH2A gene reveals two novel pathogenic variants in Chinese patients causing simplex usher syndrome 2

description: Additional file 2: Table S2. variants predicted non-pathogenic in this study.