cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/ydskhmmmz4.1
title: Paraneoplastic Autoantibody Testing at an Academic Medical Center

description: Supplementary file 1: Data for 487 Mayo serum paraneoplastic panel orders (test code: PAVAL) on 483 unique patients. The retrospective timeframe is December 1, 2008 through November 30, 2018. Supplementary file 2: Data for 280 Mayo CSF paraneoplastic panel (test code: PAC1) orders on 276 unique patients. The retrospective timeframe is January 6, 2009 through November 30, 2018. Supplementary file 3: Data for 142 ARUP Laboratories NMDA receptor antibodies in CSF (test code: 2005164) orders on 135 unique patients. The retrospective timeframe is November 19, 2012 through November 30, 2018. Supplementary file 4: Data for 150 ARUP Laboratories NMDA receptor antibodies in serum (test code: 2004221) orders on 144 unique patients. The retrospective timeframe is July 31, 2012 through November 30, 2018. Supplementary file 5: Data for 56 ARUP Laboratories voltage-gated calcium channel (VGCC) antibodies in serum (test code: 2004890) orders on 45 unique patients. The retrospective timeframe is July 25, 2012 through November 30, 2018. Supplementary file 6: Data for 120 ARUP Laboratories voltage-gated potassium channel (VGKC) antibodies in serum (test code: 3002046) orders on 110 unique patients. The retrospective timeframe is July 25, 2012 through November 30, 2018. Supplementary file 7: Data for 215 ARUP serum paraneoplastic reflexive panel (test code: 3002929) orders on 205 unique patients. The retrospective timeframe is October 8, 2015 through November 30, 2018.
DOI: 10.17632/5g7szbf4p2.1
title: single_cell FEM

description: data for paper "FEM: mining biological meaning from cell level in single-cell RNA sequencing data" The directory hg19 is PBMC scRNA-SEQ data. The directory human_liver is liver scRNA-SEQ data. The directory human_pancreas is pancreas scRNA-SEQ data. The directory gsea_cut_off\hg19 is PBMC FEM data. The directory gsea_cut_off\human_liver is the liver FEM data. The directory gsea_cut_off\human_pancreas is pancreas FEM data.
DOI: 10.5281/zenodo.5106122
title: Multiple parasitoid species enhance top-down control, but parasitoid performance is context-dependent

description: Ecological communities are composed of a multitude of interacting species, forming complex networks of interactions. Current global changes are altering community composition and we thus need to understand if the mechanisms structuring species interactions are consistent across different species compositions. However, it is challenging to explore which aspects of species interactions are primarily driven by community structure and which by species identity. Here we compared the outcome of host-parasitoid interactions across four community modules that are common in host-parasitoid communities with a laboratory experiment using a pool of three <em>Drosophila </em>host and three larval parasitoid species, resulting in nine different species assemblages. Our results show general patterns of community structure for host-parasitoid interactions. Multiple parasitoid species enhanced host suppression without general antagonistic effects between parasitoid species. Presence of an alternative host species had no general effects on host suppression nor on parasitoid performance, therefore showing no evidence of indirect interactions between host species nor any host switching behavior. However, effects of community structure on parasitoid performance were species-specific and dependent on the identity of co-occurring species. Consequently, our findings highlight the importance of both the structure of the community and its species composition for the outcome of interactions.
DOI: 10.17632/572svz6nvb.1
title: Data for Tiddy et al. 2021 Outplanting of branching Acropora enhances recolonization of a fish species and protects massive corals from predation

description: Data for the publication: Tiddy, I. C., Kaullysing, D., Bailey, D. M., Chummun, P. K., Killen, S. S., Le Vin, A., & Bhagooli, R. (2021). Outplanting of branching Acropora enhances recolonization of a fish species and protects massive corals from predation. Coral Reefs, 1-13. ABSTRACT: Damselfish of the genus Stegastes inhabit territories and cultivate algal gardens on branching corals of the genus Acropora, aggressively protecting their territories from other fish and preventing predation upon corals within the territory. This behaviour has important ecological impacts and could also be useful in reducing predation on outplanted corals during reef restoration efforts. However, the degree of protection from predators may depend on the ability of Stegastes spp. to recolonise outplanted or newly established coral colonies. Protection of bleaching-resilient massive corals within territories may be of particular importance due to the role of these corals in maintaining coral cover following bleaching events. This study examined whether the presence of Stegastes spp. reduces predation on the massive bleaching-resilient coral Porites lutea in the Mauritian lagoon, and whether Stegastes spp. readily colonise outplanted branching coral fragments and provide adjacent massive corals with indirect protection from predation. Predation levels on wild-occurring and outplanted P. lutea within and outside Stegastes spp. territories were measured. In addition, Acropora muricata branches were outplanted adjacent to wild P. lutea colonies outside Stegastes spp. territories, and recolonisation of these outplants by Stegastes spp. and the impacts of recolonisation on predation were monitored. Both wild and outplanted P. lutea colonies within Stegastes spp. territories sustained less predation damage compared to colonies outside territories. Stegastes spp. recolonized outplanted A. muricata colonies within six months of outplanting, and in doing so returned predation protection to adjacent P. lutea colonies. The ability of Stegastes spp. to colonise outplanted corals and provide indirect protection to adjacent massive bleaching-resilient corals may inform coral outplanting efforts in systems where Stegastes spp. are common. Encouraging Stegastes spp. recolonisation may help to reduce predation damage to corals within territories and potentially improve the success of rehabilitation efforts.
DOI: 10.17632/hs7tyhb7np.1
title: Protocolo 6. Búsqueda de Congresos en SCImago Journal & Country Rank

description: El propósito de este documento es establecer unas pautas básicas para la búsqueda de congresos indexados en Scopus a partir de la plataforma SCImago Journal & Country Rank (https://www.scimagojr.com/) indicando además el proceso para establecer el cuartil en el que se ubicaría la publicación según el indicador SJR.
DOI: 10.17632/8kz7rwmwnt.1
title: saliva and serum NOx-data

description: Nitric oxide plays a vital role in neurological development. As an easily accessible and non-invasive fluid, saliva hasn’t been evaluated for nitrite among autism spectrum disorder (ASD). This dataset shows the salivary nitrite, serum nitrite and nitrate levels of 126 ASD children and 129 normally developing children (the control group). In the ASD group, salivary nitrite was significantly higher than that in the control, with concentrations of 4.97±3.77 μM (0.55 – 16.46 μM) and 2.66 ± 2.07 μM (0.23 – 9.83 μM) (p &lt; 0.0001), respectively. Similarly, serum nitrite and nitrate of the ASD group were also significantly higher than those of the control group. Serum nitrite levels in the ASD and control groups were 0.26 ± 0.20 μM and 0.18 ± 0.10 μM (p &lt; 0.0001). Serum nitrate levels in the ASD and control groups were 42.02 ± 23.97 μM and 35.74 ± 13.49 μM, respectively, with p equal to 0.0109. Positive correlation was observed among saliva nitrite, serum nitrite and serum nitrate in ASD children, which didn’t exist in the control. Taken together, along with elevated serum NOx, up-regulated salivary nitrite showed strong correlation with ASD, which might serve as another potential biomarker for ASD diagnosis.
DOI: 10.17632/4b57fb2z9y.1
title: Protocolo 2. Indexación de monografías de sellos editoriales universitarios

description: El propósito de este documento es orientar la renovación de los micro sitios de investigaciones y biblioteca mediante la integración de la comunidad universitaria a partir de un mejor conocimiento del ecosistema para la investigación, incluidos insumos, procesos, resultados e impactos y del alineamiento de los servicios de biblioteca virtual. Bajo este objetivo se requiere desarrollar una arquitectura de información, un diseño gráfico y de contenidos de alto valor reputacional que se aplique al sitio de investigación y al de biblioteca.
DOI: 10.17632/633knvybbz.1
title: Replication Data For Factors Affecting Implementation of Appropriate Sanitation and Hygiene Practices in Selected Primary Schools of Masaka District

description: 3.9 Data Collect Tools and Methods The study used predominantly observation guide and questionnaire for all respondents and interview guide for teachers and support staffs, as per the study variables. Focus Group Discussion guide was used for all categories of respondents. 3.1.1 Observation Guide The researcher made observation as per the guide designed. The observed parameters were; availability of hand washing station, number of hand washing stations, location of hand washing station, availability of soap at hand washing station. Others were; availability of water at hand washing station, Volume of water, type of water and cleanliness of the toilet/latrine. 3.9.2 Questionnaires Researcher administered questionnaire were used to interview respondents soon after using toilet/latrine. Respondents were asked to state whether any of the stated independent variables affected their proper latrine use or hand washing behaviours. The researcher took note of all the responses as they were given 3.9.3 Interview Guide Qualitative data was collected from senior school heads by use of an interview guide which was structured in a way that allows flexibility. The researcher ensured that the same general areas of information are collected from each interviewee in a conversational approach that allows a degree of freedom and adaptability in getting information from the interviewee. The researcher was able to ask probing questions based on the responses to pre-constructed questions. This enabled in-depth exploration of the views of the respondents. 3.9.4 Focus Group Discussion Focus discussions with three focus groups were held comprising teachers, support staffs and pupils respectively. The first group comprised of teachers (12 in number), the second group consisted of support staffs (12 in number) and the third group comprised pupils (15 in number). Each focus group was guided by the researcher to extract first-hand information about sanitation and hygiene practices in schools.
DOI: 10.17632/r5tfjc8j2m.1
title: 2018 China Disaster Preparedness Survey-why not prepared

description: This is a survey data conducted in 2018 covering all provinces of China. It primarily covers the topics of disasters, risk perception, and preparedness.
DOI: 10.17632/j3762k2f46.2
title: Forensic full range scanner for unique identification of paper and banknotes, pre-embodied with exclusivity antipode trace elements
DOI: 10.17632/76kcwsgs94.1
title: Data for: Promoting Financial Literacy among the Elderly

description: Stata code and data for the manuscript titled "Promoting Financial Literacy among the Elderly: Consequences on Confidence". We conduct an impact evaluation of a two-hour lecture targeting the elderly population. We find that the intervention does not have a significant impact on knowledge but has a significant effect on confidence and (partly) on overconfidence.
DOI: 10.17632/mhx3p7w3d6.6
title: Perceptions and opinions on the COVID-19 pandemic in Flanders, Belgium: Data from a five-wave longitudinal study

description: During the COVID-19 pandemic, people have become increasingly fearful of the disease as death tolls rise, while governments attempt to combat it by installing restrictive measures. News media play a vital role as they are the main sources from which people gather information regarding the disease and the public health measures. The present longitudinal data reflect a bird’s eye view of people’s fears towards getting ill, their news media consumption, their attitudes regarding the (Belgian) government’s handling of the COVID-19 crisis, informal care burden, and changes in physical activities. Data were collected at five key moments in the pandemic among adults in Flanders, Belgium: in the middle of March 2020 (W1; when the first restrictive measures went into effect; N = 1,000), early April 2020 (W2; as hospital admissions and death toll peaked; N = 870), at the end of May and beginning of June 2020 (W3; as several measures were lifted or relaxed; N = 768), in late August 2020 (W4; as infection rates increased again; N = 505), and in the middle of March 2021, exactly one year after the first data collection (W5; N = 408). In W4 and W5, new respondents were added to the longitudinal sample to strengthen cross-sectional analyses of these data. These data may be of interest to researchers who wish to explore dynamics of fear and attitudes towards public health measures during this particularly challenging time.
DOI: 10.17632/g98xdnp4x3.1
title: Intelligent Detection and Classification System for Rail Surface Defects Based on Eddy Current

description: This work presents a system to detect squats on rails based on a device that monitors the train wheel's oscillation frequency. In it, the sensor should be installed directly on the service trains. It uses wavelet power Spectrum in Frequencies between 1060-1160 Hz and a simple threshold for Squat identification. This work is limited to squats detection for preventive maintenance.
DOI: 10.17632/g98xdnp4x3.2
title: Intelligent Detection and Classification System for Rail Surface Defects Based on Eddy Current

description: This work presents a system to detect squats on rails based on a device that monitors the train wheel's oscillation frequency. In it, the sensor should be installed directly on the service trains. It uses wavelet power Spectrum in Frequencies between 1060-1160 Hz and a simple threshold for Squat identification. This work is limited to squats detection for preventive maintenance.
DOI: 10.17632/bn37fhz96s.1
title: Argumentative Tweets Analysis - Language of Populism

description: This coded database presents a corpus of argumentative tweets published by four politicians (Matteo Salvini, Donald Trump, Jair Bolsonaro, and Joe Biden) within 6 months from their taking office, which corresponds to the official end of their election campaign. The coding is based on a threefold method of analysis based on the instruments of argumentation theory and pragmatics[1]. First, the types of arguments are recognized and classified according to a systematic organization of the argumentation schemes developed in the literature[2]. Second, arguments are evaluated considering the fallacies committed. Third, the uses and misuses of “emotive words” are assessed. Based on this theoretical framework, each tweet is thus attributed three categories of codes: 1) argument types (maximum two, corresponding to the most important ones); 2) fallacies (maximum two types of fallacies, plus a distinct indication of the lack of necessary evidence or false presupposition); and 3) emotive language (maximum three emotive words, plus the most important emotion expressed). A total of 2657 tweets are coded, providing a ground for comparative works and an instrument for training further coding of different corpora.
DOI: 10.17632/y6hsd3nzkc.1
title: Multicomponent Fe-Cr-based alloys. Machine learning

description: We predicted the mixing enthalpy, Young’s modulus and Pugh’s ratio for over 0.5 million multicomponent Fe-Cr-based alloys.
DOI: 10.17632/rgtddfyp97.2
title: Modular microenvironment components reproduce vascular dynamics de novo in a multi-scale agent-based model: VASCULAR FUNCTION

description: Data and results for `VASCULAR FUNCTION` simulations. Simulations of cancerous cells in colony and tissue contexts with pattern and various graph layouts with degradation by cancerous cells and vascular remodeling. Each condition is run for 15 days (21600 ticks) with 10 replicates (random seeds 0 - 9). Cancerous cells (max_height x 1.5, meta_pref x 1.5, migra_threshold x 0.5) are introduced to the center of the environment after a 1 day delay. Snapshots are taken every 0.5 days (720 ticks). The data folder contains .tar.xz compressed replicate sets. The data.graph folder contains .tar.xz compressed replicate sets for .GRAPH output. The results folder contains .pkl files of data parsed into arrays. Simulations are labeled as: [context]_[sites]_[layout] - [context] - C = colony context, cancerous cells only - CH = tissue context, cancerous cells and healthy cells - [sites] - PATTERN = site architecture defined by pattern - GRAPH = site architecture defined by graph layout - [layout] - simulations with PATTERN do not have a layout label - Lav = line root graph with one artery and one vein (L11) - Lava = line root graph with two arteries and one vein (L21) - Lvav = line root graph with one artery and two veins (L12) - Sav = single root graph with one artery and one vein (S11) - Savav = single root graph with two arteries and two veins (S22)
DOI: 10.17632/p8yzkdccg7.2
title: Modular microenvironment components reproduce vascular dynamics de novo in a multi-scale agent-based model: VESSEL COLLAPSE

description: Data and results for `VESSEL COLLAPSE` simulations. Simulations of cancerous cells in tissue context with realistic vasculature (single root with two arteries and two veins). Different variations of the vasculature are produced using random seeds 0 - 9 and assigned letters from A - J, respectively. Each condition is run for 22 days (31680 ticks) with 10 replicates (random seeds 0 - 9) for each of the 10 vasculature variations, for 100 total simulations per parameter value. Cancerous cells (max_height x 1.5, meta_pref x 1.5, migra_threshold x 0.5) are introduced to the center of the environment after a 1 day delay. Snapshots are taken every 0.5 days (720 ticks). Parameters (degradation rate and stabilization fraction) are varied from 0.0 to 1.0 (increments of 0.1). For stabilization fraction simulations, stabilization step is set to day 8 (11520 ticks). Note that simulations with stabilization fraction use modified code. The data folder contains .tar.xz compressed replicate sets. The data.graph folder contains .tar.xz compressed replicate sets for .GRAPH output. The results folder contains compressed .csv files with parsed metrics for each simulation and .csv files with all simulation metrics consolidated into a single file. Simulations are labeled as: [parameter]_[value]_[graph] - [parameter] - degradation = degradation rate - stabilized = stabilization fraction - [value] - ### = parameter value (###/100) - [graph] - A = single root graph with two arteries and two veins, seed 0 - B = single root graph with two arteries and two veins, seed 1 - ... - J = single root graph with two arteries and two veins, seed 9
DOI: 10.17632/grtx87d27y.2
title: Modular microenvironment components reproduce vascular dynamics de novo in a multi-scale agent-based model: VASCULAR DAMAGE

description: Data and results for `VASCULAR DAMAGE` simulations. Simulations of cancerous cells in colony and tissue contexts with different damage multipliers (from 0 to 1 in increments of 0.1) with relative hemodynamic fraction of 0 (static sources) or 1 (estimated hemodynamics). Each condition is run for 15 days (21600 ticks) with 10 replicates (random seeds 0 - 9). Cancerous cells (max_height x 1.5, meta_pref x 1.5, migra_threshold x 0.5) are introduced to the center of the environment after a 1 day delay. Snapshots are taken every 0.5 days (720 ticks). The data folder contains .tar.xz compressed replicate sets. The results folder contains .pkl files of data parsed into arrays. Simulations are labeled as: [context]_[damage]_[fraction] - [context] - C = colony context, cancerous cells only - CH = tissue context, cancerous cells and healthy cells - [damage] - ### = value of damage parameter (###/100) - [fraction] - ### = fraction of hemodynamic factor (###/100)
DOI: 10.17632/8k7f7fcg7t.2
title: Modular microenvironment components reproduce vascular dynamics de novo in a multi-scale agent-based model: EXACT HEMODYNAMICS

description: Data and results for `EXACT HEMODYNAMICS` simulations. Simulations of cancerous cells in colony and tissue contexts with pattern and various graph layouts. Each condition is run for 15 days (21600 ticks) with 10 replicates (random seeds 0 - 9). Cancerous cells (max_height x 1.5, meta_pref x 1.5, migra_threshold x 0.5) are introduced to the center of the environment after a 1 day delay. Snapshots are taken every 0.5 days (720 ticks). The data folder contains .tar.xz compressed replicate sets. The data.graph folder contains .tar.xz compressed replicate sets for .GRAPH output. The results folder contains .pkl files of data parsed into arrays. Simulations are labeled as: [context]_[sites]_[layout] - [context] - C = colony context, cancerous cells only - CH = tissue context, cancerous cells and healthy cells - [sites] - PATTERN = site architecture defined by pattern - GRAPH = site architecture defined by graph layout - [layout] - simulations with PATTERN do not have a layout label - Lav = line root graph with one artery and one vein (L11) - Lava = line root graph with two arteries and one vein (L21) - Lvav = line root graph with one artery and two veins (L12) - Sav = single root graph with one artery and one vein (S11) - Savav = single root graph with two arteries and two veins (S22)
DOI: 10.25934/00005747.0
title: Available IPD datapackage for study 'Randomized Placebo-controlled Study of Two Treatment Strategies Based on Tocilizumab (TCZ) With or Without Methotrexate (MTX) and Possible Addition of Other Disease-modifying Anti-rheumatic Drugs (DMARDs) in Patients...'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00005747.1
title: IPD datapackage for study 'Randomized Placebo-controlled Study of Two Treatment Strategies Based on Tocilizumab (TCZ) With or Without Methotrexate (MTX) and Possible Addition of Other Disease-modifying Anti-rheumatic Drugs (DMARDs) in Patients...' and research request: 'Predicting the Treatment Response of Biologics for Individual Patients with Rheumatoid Arthritis: An Individual Participant Data Meta-Analysis '

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.