cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14253620
title: Additional file 3 of Can ultrasound novices develop image acquisition skills after reviewing online ultrasound modules?

description: Additional file 3. Data collected from study with descriptive statistical analysis.
DOI: 10.6084/m9.figshare.14253653
title: Additional file 10 of Systematic review of outcome domains and instruments used in designs of clinical trials for interventions that seek to restore bilateral and binaural hearing in adults with unilateral severe to profound sensorineural hearing loss (‘single-sided deafness’)

description: Additional file 10. Complete list of measurement instruments. A comprehensive list of all primary and secondary measurement instruments (n = 344) reported across the 72 included studies, classified according to our domain taxonomy. Where the name of a standard instrument is not given by the authors, a short description is provided instead.
DOI: 10.6084/m9.figshare.14253653.v1
title: Additional file 10 of Systematic review of outcome domains and instruments used in designs of clinical trials for interventions that seek to restore bilateral and binaural hearing in adults with unilateral severe to profound sensorineural hearing loss (‘single-sided deafness’)

description: Additional file 10. Complete list of measurement instruments. A comprehensive list of all primary and secondary measurement instruments (n = 344) reported across the 72 included studies, classified according to our domain taxonomy. Where the name of a standard instrument is not given by the authors, a short description is provided instead.
DOI: 10.6084/m9.figshare.14253674
title: Additional file 7 of Systematic review of outcome domains and instruments used in designs of clinical trials for interventions that seek to restore bilateral and binaural hearing in adults with unilateral severe to profound sensorineural hearing loss (‘single-sided deafness’)

description: Additional file 7. Data masterfile. An editable version of the data masterfile comprising three worksheets for the 72 studies fitting all criteria, the 24 studies closely fitting the audiometric criteria and the 12 systematic reviews.
DOI: 10.6084/m9.figshare.14253674.v1
title: Additional file 7 of Systematic review of outcome domains and instruments used in designs of clinical trials for interventions that seek to restore bilateral and binaural hearing in adults with unilateral severe to profound sensorineural hearing loss (‘single-sided deafness’)

description: Additional file 7. Data masterfile. An editable version of the data masterfile comprising three worksheets for the 72 studies fitting all criteria, the 24 studies closely fitting the audiometric criteria and the 12 systematic reviews.
DOI: 10.6084/m9.figshare.14253683
title: Additional file 1 of Extrinsic stressors modulate resource evaluations: insights from territoriality under artificial noise

description: Additional file 1: Table S1. All data used in experimental and preliminary analyses.
DOI: 10.6084/m9.figshare.14253683.v1
title: Additional file 1 of Extrinsic stressors modulate resource evaluations: insights from territoriality under artificial noise

description: Additional file 1: Table S1. All data used in experimental and preliminary analyses.
DOI: 10.6084/m9.figshare.14253753
title: Additional file 11 of Cooperative treatment effectiveness of ATR and HSP90 inhibition in Ewing’s sarcoma cells

description: Additional file 11: File S1. Proteome alterations in A673 cells induced by AUY922, VE821 and AUY-VE.
DOI: 10.6084/m9.figshare.14253753.v1
title: Additional file 11 of Cooperative treatment effectiveness of ATR and HSP90 inhibition in Ewing’s sarcoma cells

description: Additional file 11: File S1. Proteome alterations in A673 cells induced by AUY922, VE821 and AUY-VE.
DOI: 10.6084/m9.figshare.14253806
title: Additional file 2 of Insights into the genome and secretome of Fusarium metavorans DSM105788 by cultivation on agro-residual biomass and synthetic nutrient sources

description: Additional file 2: Integration table of the fungus.
DOI: 10.6084/m9.figshare.14253806.v1
title: Additional file 2 of Insights into the genome and secretome of Fusarium metavorans DSM105788 by cultivation on agro-residual biomass and synthetic nutrient sources

description: Additional file 2: Integration table of the fungus.
DOI: 10.6084/m9.figshare.14253812.v1
title: Additional file 3 of Insights into the genome and secretome of Fusarium metavorans DSM105788 by cultivation on agro-residual biomass and synthetic nutrient sources

description: Additional file 3: The phylogenetic tree provided by Dr. Kerry O’Donnell.
DOI: 10.6084/m9.figshare.14253812
title: Additional file 3 of Insights into the genome and secretome of Fusarium metavorans DSM105788 by cultivation on agro-residual biomass and synthetic nutrient sources

description: Additional file 3: The phylogenetic tree provided by Dr. Kerry O’Donnell.
DOI: 10.6084/m9.figshare.14253815
title: Additional file 4 of Insights into the genome and secretome of Fusarium metavorans DSM105788 by cultivation on agro-residual biomass and synthetic nutrient sources

description: Additional file 4: The phylogenetic tree including the FW16.1 strain.
DOI: 10.6084/m9.figshare.14253815.v1
title: Additional file 4 of Insights into the genome and secretome of Fusarium metavorans DSM105788 by cultivation on agro-residual biomass and synthetic nutrient sources

description: Additional file 4: The phylogenetic tree including the FW16.1 strain.
DOI: 10.6084/m9.figshare.14253831
title: Additional file 1 of About classical molecular genetics, cytogenetic and molecular cytogenetic data not considered by Genome Reference Consortium and thus not included in genome browsers like UCSC, Ensembl or NCBI

description: Additional file 1. Here sizes of chromosomal subbands were determined (in percent of total chromosomal length) according to ISCN (2020) [15] and aligned with the overall DNA-content per chromosome given in UCSC [9].
DOI: 10.6084/m9.figshare.14253831.v1
title: Additional file 1 of About classical molecular genetics, cytogenetic and molecular cytogenetic data not considered by Genome Reference Consortium and thus not included in genome browsers like UCSC, Ensembl or NCBI

description: Additional file 1. Here sizes of chromosomal subbands were determined (in percent of total chromosomal length) according to ISCN (2020) [15] and aligned with the overall DNA-content per chromosome given in UCSC [9].
DOI: 10.6084/m9.figshare.14253866
title: Additional file 1 of New Brucella variant isolated from Croatian cattle

description: Additional file 1. Table with strains metadata.
DOI: 10.6084/m9.figshare.14253866.v1
title: Additional file 1 of New Brucella variant isolated from Croatian cattle

description: Additional file 1. Table with strains metadata.
DOI: 10.6084/m9.figshare.14253896
title: Additional file 2 of Changes in patient visits and diagnoses in a large academic center during the COVID-19 pandemic

description: Additional file 2: Supplement 2. All changes in diagnostic codes by ophthalmic subspecialty.
DOI: 10.6084/m9.figshare.14253917
title: Additional file 6 of Parental mental health conditions and use of healthcare services in children the first year of life– a register-based, nationwide study

description: Additional file 6: Supplementary Table 6. Adjusted incidence rate ratios (95% confidence interval) of each outcome in strata of calendar year.
DOI: 10.6084/m9.figshare.14253917.v1
title: Additional file 6 of Parental mental health conditions and use of healthcare services in children the first year of life– a register-based, nationwide study

description: Additional file 6: Supplementary Table 6. Adjusted incidence rate ratios (95% confidence interval) of each outcome in strata of calendar year.
DOI: 10.6084/m9.figshare.14253941
title: Additional file 5 of d-Tryptophan enhances the reproductive organ-specific expression of the amino acid transporter homolog Dr-SLC38A9 involved in the sexual induction of planarian Dugesia ryukyuensis

description: Additional file 5: Supplementary Data Sheet S1. The raw data of qRT-PCR analyses for Fig. 1, 4 and 5.
DOI: 10.6084/m9.figshare.14253941.v1
title: Additional file 5 of d-Tryptophan enhances the reproductive organ-specific expression of the amino acid transporter homolog Dr-SLC38A9 involved in the sexual induction of planarian Dugesia ryukyuensis

description: Additional file 5: Supplementary Data Sheet S1. The raw data of qRT-PCR analyses for Fig. 1, 4 and 5.
DOI: 10.6084/m9.figshare.14253948
title: Additional file 2 of The effect of silica desiccation under different storage conditions on filter-immobilized environmental DNA

description: Additional file 2. Raw data for gBlocks synthetic DNA eFrog3 and eLICA1 standard curves.
DOI: 10.6084/m9.figshare.14253948.v1
title: Additional file 2 of The effect of silica desiccation under different storage conditions on filter-immobilized environmental DNA

description: Additional file 2. Raw data for gBlocks synthetic DNA eFrog3 and eLICA1 standard curves.
DOI: 10.6084/m9.figshare.14253954
title: Additional file 4 of The effect of silica desiccation under different storage conditions on filter-immobilized environmental DNA

description: Additional file 4. Raw data for Experiment 1: Comparison between ethanol and silica filter preservation of relatively abundant eDNA at three holding temperatures over time.
DOI: 10.6084/m9.figshare.14253954.v1
title: Additional file 4 of The effect of silica desiccation under different storage conditions on filter-immobilized environmental DNA

description: Additional file 4. Raw data for Experiment 1: Comparison between ethanol and silica filter preservation of relatively abundant eDNA at three holding temperatures over time.
DOI: 10.6084/m9.figshare.14253957
title: Additional file 5 of The effect of silica desiccation under different storage conditions on filter-immobilized environmental DNA

description: Additional file 5. Raw data for Experiment 2: Effect of holding temperature and time on low abundance eDNA on silica-preserved filters.
DOI: 10.6084/m9.figshare.14253957.v1
title: Additional file 5 of The effect of silica desiccation under different storage conditions on filter-immobilized environmental DNA

description: Additional file 5. Raw data for Experiment 2: Effect of holding temperature and time on low abundance eDNA on silica-preserved filters.
DOI: 10.6084/m9.figshare.14253963
title: Additional file 1 of The effects of model complexity and size on metabolic flux distribution and control: case study in Escherichia coli

description: Additional file 1. MATLAB models of D1, D2 and D3. Models used for obtaining thermodynamically feasible steady-states for constructing populations of kinetic models. Software for reading models is available on GitHub: https://github.com/EPFL-LCSB/matTFA.
DOI: 10.6084/m9.figshare.14253966
title: Additional file 2 of The effects of model complexity and size on metabolic flux distribution and control: case study in Escherichia coli

description: Additional file 2. Fluxomics and metabolomics experimental data incorporated in the model for optimally grown E. coli. Table with the flux boundaries in mmol/gDW/h and the concentration boundaries in log(mM) that were applied as constraints to the D1-3 TFA models based on the experimental data reported by McCloskey et al.
DOI: 10.6084/m9.figshare.14253966.v1
title: Additional file 2 of The effects of model complexity and size on metabolic flux distribution and control: case study in Escherichia coli

description: Additional file 2. Fluxomics and metabolomics experimental data incorporated in the model for optimally grown E. coli. Table with the flux boundaries in mmol/gDW/h and the concentration boundaries in log(mM) that were applied as constraints to the D1-3 TFA models based on the experimental data reported by McCloskey et al.
DOI: 10.6084/m9.figshare.14253969
title: Additional file 3 of The effects of model complexity and size on metabolic flux distribution and control: case study in Escherichia coli

description: Additional file 3. Thermodynamics-based variability analysis of models. Spreadsheet with the list of metabolites and reactions inside the models with variability analysis of flux and metabolite concentrations. The lumped reactions generated with the redGEM and lumpGEM algorithms begin with LMPD. Reactions added to the E. coli iJO1366 for passive diffusive transport start with TransFlux. The rest of the reactions come from E. coli iJO1366.
DOI: 10.6084/m9.figshare.14253963.v1
title: Additional file 1 of The effects of model complexity and size on metabolic flux distribution and control: case study in Escherichia coli

description: Additional file 1. MATLAB models of D1, D2 and D3. Models used for obtaining thermodynamically feasible steady-states for constructing populations of kinetic models. Software for reading models is available on GitHub: https://github.com/EPFL-LCSB/matTFA.
DOI: 10.6084/m9.figshare.14253975
title: Additional file 5 of The effects of model complexity and size on metabolic flux distribution and control: case study in Escherichia coli

description: Additional file 5. Flux and concentration steady states. Spreadsheet providing metabolic flux and concentration reference steady-states across the models with a comparative study of these steady states between pairs of models.
DOI: 10.6084/m9.figshare.14253969.v1
title: Additional file 3 of The effects of model complexity and size on metabolic flux distribution and control: case study in Escherichia coli

description: Additional file 3. Thermodynamics-based variability analysis of models. Spreadsheet with the list of metabolites and reactions inside the models with variability analysis of flux and metabolite concentrations. The lumped reactions generated with the redGEM and lumpGEM algorithms begin with LMPD. Reactions added to the E. coli iJO1366 for passive diffusive transport start with TransFlux. The rest of the reactions come from E. coli iJO1366.
DOI: 10.6084/m9.figshare.14253975.v1
title: Additional file 5 of The effects of model complexity and size on metabolic flux distribution and control: case study in Escherichia coli

description: Additional file 5. Flux and concentration steady states. Spreadsheet providing metabolic flux and concentration reference steady-states across the models with a comparative study of these steady states between pairs of models.
DOI: 10.6084/m9.figshare.14253981
title: Additional file 7 of The effects of model complexity and size on metabolic flux distribution and control: case study in Escherichia coli

description: Additional file 7. Kinetic mechanism allocation. Reaction mechanisms assigned for the reactions of D1, D2 and D3 models. The assigned reaction mechanisms in this file refer to the kinetic mechanisms for which a mathematical description is given in Additional file 4.
DOI: 10.6084/m9.figshare.14253978.v1
title: Additional file 6 of The effects of model complexity and size on metabolic flux distribution and control: case study in Escherichia coli

description: Additional file 6. Analysis of absolute deviations in means of flux control coefficients for the entire systems. The mean flux control coefficient $$C_p^v$$ C p v is first computed based on the populations of 50’000 models for D1-3 for all enzymatic reactions with respect to all the enzymes. The absolute deviation between these means of control coefficients is compared pairwise for D1 and D2, and D2 and D3. The vertical corresponds to the reactions v and the horizontal to the enzymes p. A large deviation indicates a discrepancy in the prediction of the model for that given control coefficient $$C_p^v$$ C p v .
DOI: 10.6084/m9.figshare.14253978
title: Additional file 6 of The effects of model complexity and size on metabolic flux distribution and control: case study in Escherichia coli

description: Additional file 6. Analysis of absolute deviations in means of flux control coefficients for the entire systems. The mean flux control coefficient $$C_p^v$$ C p v is first computed based on the populations of 50’000 models for D1-3 for all enzymatic reactions with respect to all the enzymes. The absolute deviation between these means of control coefficients is compared pairwise for D1 and D2, and D2 and D3. The vertical corresponds to the reactions v and the horizontal to the enzymes p. A large deviation indicates a discrepancy in the prediction of the model for that given control coefficient $$C_p^v$$ C p v .
DOI: 10.6084/m9.figshare.14253981.v1
title: Additional file 7 of The effects of model complexity and size on metabolic flux distribution and control: case study in Escherichia coli

description: Additional file 7. Kinetic mechanism allocation. Reaction mechanisms assigned for the reactions of D1, D2 and D3 models. The assigned reaction mechanisms in this file refer to the kinetic mechanisms for which a mathematical description is given in Additional file 4.
DOI: 10.6084/m9.figshare.14254007
title: Additional file 1 of Whole genome mapping and identification of single nucleotide polymorphisms of four Bangladeshi individuals and their functional significance

description: Additional file 1: Table S1. Sequencing related statistics for all four samples; including number of reads, number of mapped reads, number of unmapped reads, etc.
DOI: 10.6084/m9.figshare.14254007.v1
title: Additional file 1 of Whole genome mapping and identification of single nucleotide polymorphisms of four Bangladeshi individuals and their functional significance

description: Additional file 1: Table S1. Sequencing related statistics for all four samples; including number of reads, number of mapped reads, number of unmapped reads, etc.
DOI: 10.6084/m9.figshare.14254016
title: Additional file 4 of Whole genome mapping and identification of single nucleotide polymorphisms of four Bangladeshi individuals and their functional significance

description: Additional file 4. Supplementary file 1: 1.exonic_variant_function, Supplementary File 2: 6.exonic_variant_function, Supplementary File 3: 19.exonic_variant_function, Supplementary File 4: 21.exonic_variant_function. Full list of exonic variants for each sample, along with associated statistics for each variant (1-Sample 1, 2-Sample 6, 3-Sample 19, 4-Sample 21).
DOI: 10.6084/m9.figshare.14254016.v1
title: Additional file 4 of Whole genome mapping and identification of single nucleotide polymorphisms of four Bangladeshi individuals and their functional significance

description: Additional file 4. Supplementary file 1: 1.exonic_variant_function, Supplementary File 2: 6.exonic_variant_function, Supplementary File 3: 19.exonic_variant_function, Supplementary File 4: 21.exonic_variant_function. Full list of exonic variants for each sample, along with associated statistics for each variant (1-Sample 1, 2-Sample 6, 3-Sample 19, 4-Sample 21).
DOI: 10.6084/m9.figshare.14254019.v1
title: Additional file 5 of Whole genome mapping and identification of single nucleotide polymorphisms of four Bangladeshi individuals and their functional significance

description: Additional file 5: Table S2A-2D: Functions most likely to be effected by the genes which contained variants (2A-Sample 1, 2B-Sample 6, 2C-Sample 19, 2D-Sample 21).
DOI: 10.6084/m9.figshare.14254022
title: Additional file 6 of Whole genome mapping and identification of single nucleotide polymorphisms of four Bangladeshi individuals and their functional significance

description: Additional file 6: Table S3 A: List of genes which contained exonic variants for all our samples. Table S3 B. Functions Effected by Unique Variants.csv: Functions effected by genes which contained unique/previously undiscovered exonic variants in our samples.
DOI: 10.6084/m9.figshare.14254022.v1
title: Additional file 6 of Whole genome mapping and identification of single nucleotide polymorphisms of four Bangladeshi individuals and their functional significance

description: Additional file 6: Table S3 A: List of genes which contained exonic variants for all our samples. Table S3 B. Functions Effected by Unique Variants.csv: Functions effected by genes which contained unique/previously undiscovered exonic variants in our samples.
DOI: 10.6084/m9.figshare.14254019
title: Additional file 5 of Whole genome mapping and identification of single nucleotide polymorphisms of four Bangladeshi individuals and their functional significance

description: Additional file 5: Table S2A-2D: Functions most likely to be effected by the genes which contained variants (2A-Sample 1, 2B-Sample 6, 2C-Sample 19, 2D-Sample 21).
DOI: 10.6084/m9.figshare.14254089.v1
title: Additional file 1 of Generation and validation of a formula to calculate hemoglobin loss on a cohort of healthy adults subjected to controlled blood loss

description: Additional file 1. Excel worksheet for volume loss calculation. Values are pasted into the respective fields, ENTER calculates the incurred blood loss (mean, range).
DOI: 10.6084/m9.figshare.14254089
title: Additional file 1 of Generation and validation of a formula to calculate hemoglobin loss on a cohort of healthy adults subjected to controlled blood loss

description: Additional file 1. Excel worksheet for volume loss calculation. Values are pasted into the respective fields, ENTER calculates the incurred blood loss (mean, range).
DOI: 10.6084/m9.figshare.14254098.v1
title: Additional file 1 of SVExpress: identifying gene features altered recurrently in expression with nearby structural variant breakpoints

description: Additional file 1. Data File S1: SV-expression integrative analysis results from the Cancer Cell Line Encyclopedia (CCLE). Provided are the complete set of gene-level correlations between expression and nearby somatic SV breakpoint in the 327 CCLE cell lines with WGS data, according to region examined (e.g., 0–100 kb upstream, 0–100 kb downstream, within the gene body, or 1 Mb upstream or downstream) and the regression model applied (with or without CNA correction). For the 1 Mb region window, relative gene distances of the breakpoints are weighted in the model. A separate tab provides the top genes for any region with FDR
DOI: 10.6084/m9.figshare.14254098
title: Additional file 1 of SVExpress: identifying gene features altered recurrently in expression with nearby structural variant breakpoints

description: Additional file 1. Data File S1: SV-expression integrative analysis results from the Cancer Cell Line Encyclopedia (CCLE). Provided are the complete set of gene-level correlations between expression and nearby somatic SV breakpoint in the 327 CCLE cell lines with WGS data, according to region examined (e.g., 0–100 kb upstream, 0–100 kb downstream, within the gene body, or 1 Mb upstream or downstream) and the regression model applied (with or without CNA correction). For the 1 Mb region window, relative gene distances of the breakpoints are weighted in the model. A separate tab provides the top genes for any region with FDR
DOI: 10.6084/m9.figshare.14254106
title: Questionnaire for High School Student Environmental Awareness Profiles

description: The High School Student Environmental Awareness Profile Questionnaire consists of 42 questions on a Likert scale (1,2,3,4,5) and is equipped with open answers to several questions. The questions are in the form of social issues developing in society.