cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.4wxq5t
title: Occurrence Download

description: A dataset containing 3405 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Potentilla aurea L.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 3405 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013342-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/9n29p7rmn5
title: A synthetic population of Sweden: datasets of agents, households, and activity-travel patterns

description: The data contains a synthetic replica of over 10 million Swedish individuals (i.e., agents), their household characteristics, and activity-travel plans. The datasets are stored in a relational database format in Person, Household, and Activity-travel tables. The Person table contains the synthetic agents their socio-demographic attributes, such as age, gender, civil status, residential zone, personal income, car ownership,  employment, etc. The Household table stores agets' household attributes such as household type, size, number of children, and number of cars. The Activity-travel table contains daily activity schedules of agents, i.e., where and when they do certain activities (work, home, school, and other) and how they travel between them (walk, bike, car, and public transport).
DOI: 10.17632/nsf8877y48
title: Akkermansia muciniphila ameliorates chronic stress-induced growth of colorectal tumor by releasing outer membrane vesicles

description: raw data
DOI: 10.6084/m9.figshare.21729332.v1
title: Tensile test data and procedures

description: CFRP coupons were tested in tension on Instron Universal Testing Machine 5900R-4484. Samples were loaded to failure at a constant displacement rate of 0.08 in./min.
DOI: 10.6084/m9.figshare.21901557.v2
title: ELGV catalogue

description: The dataset contains a catalogue of 160,478 non-redundant viral sequences (ELGV_all_160478.fna.gz), representing 82,141 viral species (ELGV_representatives_82141.fna.gz) in the first three years of life.
DOI: 10.6084/m9.figshare.28179902.v1
title: Insights into Ecology, Evolution, and Global Change Responses from Very Long-Term Studies

description: Data set used to produce the figures in Insights into Ecology, Evolution, and Global Change Responses from Very Long-Term Studies, Ecology Letters, by Viblanc & Muller-Landau
DOI: 10.6084/m9.figshare.28340207.v1
title: Data availability for Infection signatures of multiple Nucleocytoviricota virus lineages in the brown algae Undaria pinnatifida

description: Data availability includes FASTA files corresponding to the GEVE region, genes and proteins and related data. This data availability also includes reassemblies of Undaria pinnatifida genome and related data.
DOI: 10.6084/m9.figshare.3543926.v1
title: Appendix C. Mean number of species per life form under different intensity of disturbance.

description: Mean number of species per life form under different intensity of disturbance.
DOI: 10.17632/bn8fzv5pk7
title: Data for: Investment Responses to Trade Liberalization: Evidence from U.S. Industries and Establishments

description: This zip file contains the computer code and publiciy available data to replicate the results in "Investment Responses to Trade Liberalization: Evidence from U.S. Industries and Establishments" by Justin R. Pierce and Peter K. Schott.
DOI: 10.17632/z53hvmtsg6
title: Proteomic analysis of "Defects in a liver-bone axis contribute to hepatic osteodystrophy disease"

description: LC-MS/MS Analysis and data analysis. 
Data acquisition was performed with a Triple TOF 5600 System (AB SCIEX, Concord, ON). Samples were chromatographed using a 90 min gradient from 2-30% (mobile phase A 0.1% (v/v) formic acid, 5% (v/v) acetonitrile; mobile phase B 0.1% (v/v) formic acid, 95% (v/v) acetonitrile) after direct injection onto a 20 μm PicoFrit emitter (New Objective) packed to 12 cm with Magic C18 AQ 3 μm 120 Å stationary phase. MS1 spectra were collected in the range 350-1,500 m/z for 250 ms. The 20 most intense precursors with charge state 2-5 were selected for fragmentation, and MS2 spectra were collected in the range 50-2,000 m/z for 100 ms; precursor ions were excluded from reselection for 15s.
The original MS/MS file data were submitted to ProteinPilot Software (version 4.5, AB Sciex) for data analysis. MS/MS data were searched against Mus musculus UniProt database (April 9, 2016, containing 50,943 sequences http://www.uniprot.org/proteomes/UP000000589). / Tandem mass spectra were searched against Homo Sapiens UniProt database (April 9, 2016, containing 160,566 sequences, http://www.uniprot.org/proteomes/UP000005640) concatenated with reverse decoy database.
The following search parameters were used: the instrument was TripleTOF 5600, iTRAQ quantification, cysteine modified with MMTS; biological modifications were selected as ID focus, the Quantitate, trypsin digestion, Bias Correction and Background Correction was checked for protein quantification and normalization. For false discovery rate (FDR) calculation, an automatic decoy database search strategy was used to estimate FDR using the PSPEP (Proteomics System Performance Evaluation Pipeline Software) algorithm. Only proteins with at least two unique peptides were considered for further analysis. For protein abundance ratios measured using iTRAQ after normalization, we specifically used ratios with p value < 0.05, and only fold changes > 1.5 or < 0.667 were considered significant.
DOI: 10.6084/m9.figshare.20354505.v1
title: Event Log Sampling Datasets

description: This datasets includes 9 event logs, which can be used to experiment with log completeness-oriented event log sampling methods. <br> · exercise.xes: The dataset is a simulation log generated by the paper review process model, and each trace clearly describes the process of reviewing papers in detail. <br> · training_log_1/3/8.xes: These 3 datasets are human-trained simulation logs for the 2016 Process Discovery Competition (PDC 2016). Each trace consists of two values, the name of the process model activity referenced by the event and the identifier of the case to which the event belongs. <br> · Production.xes: This dataset includes process data from production processes, and each track includes data for cases, activities, resources, timestamps, and more data fields. <br> · BPIC_2012_A/O/W.xes: These 3 dataset are derived from the personal loan application process of a financial institution in the Netherlands. The process represented in the event log is the application process of a personal loan or overdraft in a global financing organization. Each trace describes the process of applying for a personal loan for different customers. <br> · CrossHospital.xes: The dataset includes the treatment process data of emergency patients in the hospital, and each track represents the treatment process of an emergency patient in the hospital.
DOI: 10.6084/m9.figshare.25046240.v1
title: Impression evaluation of a robot

description: This study aimed to investigate the impression evaluation of a new type of robot. We have conducted two experiments, Experiment 1 and Experiment 2, and uploaded the raw data of each experimental result. A research article on the details of the experiment is currently being submitted to a journal.<b>Data</b>Experiment 1: Experiment_1_raw.xlsxExperiment 2: Experiment_2_raw.xlsx
DOI: 10.6084/m9.figshare.28826354.v1
title: pdxe_mouse_and_human_isoform_TPM.txt.gz

description: Updated annotations and expression count matrices for the 2015 Novartis PDXE manuscript. Expression counts are calculated using PISCES (which in turn uses Salmon), against the Ensembl reference transcriptome.PDXE manuscript: Gao, H., Korn, J., Ferretti, S. et al. High-throughput screening using patient-derived tumor xenografts to predict clinical trial drug response. Nat Med 21, 1318–1325 (2015). https://doi.org/10.1038/nm.3954PISCES manuscript: https://www.biorxiv.org/content/10.1101/2020.12.01.390575v1Salmon: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5600148/
DOI: 10.17632/rtrx3rbxhh
title: Data collected for CD36-mediated endocytosis of proteolysis-targeting chimeras

description: Original raw data of immunoblotting images, SPR, MTT assays, in vivo assays, and chemical synthesis and characterization has been deposited here.
DOI: 10.6084/m9.figshare.10247069.v1
title: Journal sentiment data for 3728 Scopus journals

description: This data set contains citation sentiment data for 3728 journals in Scopus. A sentiment classifier was used to measure the sentiment score of each citance. The sentiment score is between -1 and 1 in which 1 indicates the strongest positive sentiment. All together, more than 32 million citances were identified from the PubMed Central OA subset and each received a sentiment score. Citances were aggregated into cited journals. A journal is assigned into one of the 27 domains in Scopus. Because one journal can have multiple domain assignments, there are more than 8000 entries in this data set. One for each journal-domain assignment.
DOI: 10.6084/m9.figshare.24501331.v1
title: LoRA weights for Llama-2 NERRE

description: Low rank adaptation fine-tuned weights for Llama 2 experiments for simultaneously extracting named entities and their relationships in structured format, with results shown in the paper "*Structured information extraction from scientific text with large language models*" in Nature Communications by John Dagdelen*, Alexander Dunn*, Sanghoon Lee, Nicholas Walker, Andrew S. Rosen, Gerbrand Ceder, Kristin Persson, and Anubhav Jain.Includes 13 independent experiments for three different tasks:General materials information extraction (five cross validation folds, one fine-tune model for each)Metal organic frameworks information extraction (five cross validation folds, one fine-tune model for each)Inorganic impurity doping information extraction (one test set for each of three schemas - JSON, English, and ExtraEnglish, each corresponding to one model)<br>
DOI: 10.6084/m9.figshare.28630379.v1
title: ORÇAMENTO, GOVERNANÇA E (DES)IGUALDADE DE GÊNERO NO NOROESTE PAULISTA: análise das Regiões de Araçatuba, Barretos e São José do Rio Preto

description: This study assesses the existence of public policies aimed at gender equality in municipalities located in the northwestern region of the state of São Paulo, specifically within the Administrative Regions of Araçatuba, Barretos, and São José do Rio Preto. The research begins with the recognition that, despite normative advances, gender inequality persists, manifesting in wage disparities, political underrepresentation, and unequal access to rights. The objective is to analyze the inclusion of gender-related themes in the initial Multi-Year Plans (PPAs) of the municipalities, the execution of related budget allocations, and local governance structures, in addition to evaluating the role of the São Paulo State Court of Accounts (TCESP) in overseeing these policies.The methodology combines qualitative and quantitative approaches, involving documentary analysis of municipal regulations, institutional websites, and public data. Results show that only 5.37% of the cities analyzed included specific programs for women in their PPAs, and even among those, implementation is often insufficient. Moreover, less than 18% of seats in municipal councils are held by women, highlighting a significant representational gap. The study concludes that there is a lack of strategic planning for gender equity, calling for concrete actions from public managers and the TCESP, including training and preventive oversight to ensure more effective gender-focused public policies.
DOI: 10.6084/m9.figshare.28828454.v1
title: FFF_Career_Mobility_Replication.zip

description: Replication Package for Upward mobility in the green sector for frontline fossil fuel workers
DOI: 10.6084/m9.figshare.8100122.v1
title: Monoterpene_India

description: Basic data used in different Figures.<br>
DOI: 10.17632/2gcrkjr88z
title: Low light image enhancement - GFT

description: This dataset contains MATLAB code used for enhancing low-light images based on the coefficients derived from the Sakaguchi-type functions subordinated to the Gegenbauer polynomial. The enhancement method focuses on improving image clarity while maintaining balanced illumination, avoiding over-enhancement, and ensuring uniform brightness across the image.
DOI: 10.17632/47bp9yhn6j
title: Examining User Perception and Adoption of Electronic Public Services

description: In order to assess the impact of various factors on the adoption process of electronic public services in the South-Central region of Bulgaria, an online survey was conducted at the University of Plovdiv Paisii Hilendarski from January 18 to May 22, 2023. The questionnaire was created using Google Forms, and the link was distributed through email, websites and social media channels of the University, Faculty of Economics and Social Sciences, and partner organizations. A total of 258 questionnaires were correctly completed during the study period. For data analysis, percentage distribution was calculated, and classical statistical, machine learning, and multi-criteria methods were applied. Despite the challenges posed by the COVID-19 lockdown and the increased need for alternative remote access to public administration services, approximately 25% (64) of the respondents still do not utilize the advantages of the electronic government environment. According to the majority of respondents (74%), the most commonly used local e-service pertains to tax and fee payments (67%). Among central public services, social security for employees stands out as the most popular. Older respondents and those with lower levels of education encounter more challenges in adopting e-services.
DOI: 10.17866/rd.salford.24612060.v1
title: 27/04/2023 - Burnley College (National College Podcast)

description: 27/04/2023 - Burnley College (National College Podcast)Delivery:x1 3 hour student-led podcast on the theme of 'Studying English'.9 students; 1 teacher.Data:Student Postcards
DOI: 10.6084/m9.figshare.20747521.v1
title: 107 transconjugants of PromA plasmids

description: This dataset is constructed by 107 draft sequences that obtained by conjugation assay in CD methods with SMDBS harboring PromA plasmids and bacterial communities extracted from soil and/or lake water. <br> <br>
DOI: 10.6084/m9.figshare.22203223.v1
title: A PacBio Hi-Fi genome assembly of the painter's mussel Unio pictorum (Linnaeus, 1758)

description: Mussels of order Unionida are a group of strictly freshwater bivalves with nearly 1,000 described species, with a dispersed geographic distribution across the world's freshwater ecosystems. Despite their fundamental ecological importance, they are highly threatened, being the faunal group with the highest records of wild extinctions. To date, only five freshwater mussel species have had their whole genome sequenced, of which only two are from European species. Here, we present the first genome assembly of the painter's mussel, <em>Unio pictorum</em> (Linnaeus, 1758), the type species representative of the order and the most widespread species of the genus in Europe. We used long-read PacBio HiFi sequencing reads to produce a highly contiguous assembly that will pave the way for the study of European freshwater mussels in the Genome Era.
DOI: 10.6084/m9.figshare.22323691.v1
title: sub-CCNPPEKxxxx.zip

description: This is a sample dataset from the Chinese Color Nest Cohort for the review of its related data paper or resource article. The dataset contains BIDS-formated multimodal brain imaging data.
DOI: 10.17632/4npyd68rw8
title: Test case data of the paper Optimization model for the analysis of multiple energy communities in the same distribution network with different providers, accepted for the presentation at the IEEE PowerTech Conference, Belgrade, June 25-29, 2023

description: The test cases of the paper 'Optimization model for the analysis of multiple energy communities in the same distribution network with different providers' refer to a deterministic day-ahead optimization. The file contains the per unit load profiles used in all the test cases obtained by the CREST tool using various numbers of dwellings, the profiles of (πbuy) and (πsell) for the two different power providers, and the profile of the ratio between power output and panel surface assumed the same for all PV units.
DOI: 10.17632/sw87xzyk7t
title: Data: High Intensity laser therapy (Class IV) and Ibuprofen gel phonophoresis for treating knee osteoarthritis among people living in hilly terrain: A randomized controlled study

description: This dataset contains details of 116 individuals with knee osteoarthritis living in hilly terrain. Among them, finally 109 individuals with knee osteoarthritis data were evaluated to determine the effect of High intensity laser therapy (class-IV) and ibuprofen gel phonophoresis for treating knee osteoarthritis among people living in hilly terrain. Class IV LASER group received Class-IV laser with exercises whereas in ibuprofen gel phonophoresis received ibuprofen gel with exercises for 3 days a week for 3 weeks.  WOMAC, SF-36 and Algometer (ALGO-DS-01) were used to assess the pre-intervention and post-intervention changes
Acknowledgement: This project was supported by the Himachal Pradesh Council for Science, Technology &Environment (HIMCOSTE) under the Registration No.: HIMCOSTE (R&D)/2019-20-2.3(6) and Sanction Order No.: STC/F(8)-6/2019 (R&D 2019-20)-365(367) Dated: 24-06-2020
DOI: 10.6084/m9.figshare.12949241.v1
title: SuppTableS3.docx

description: Two sets of PCR primers used to amplify each transcript in two fragments using CloneAmp HiFi PCR Premix
DOI: 10.6084/m9.figshare.19115741.v1
title: meta-data climate changes.xlsx

description: The dataset for this analysis of WTP for climate change policies and online appendix
DOI: 10.6084/m9.figshare.22134209.v1
title: Male 10wk CBA_B tibial epiphysis

description: 3D .tif of a healthy cba mouse (male, 10 weeks old) tibial epiphysis. 5um effective pixel size, uCT.
DOI: 10.6084/m9.figshare.23523639.v1
title: Iron Microbiome Dataset 2023_02_13.xlsx

description: Effect of intravenous iron preparations (FCM and FDI) on gut microbiome in mice with iron deficiency anemia
DOI: 10.6084/m9.figshare.25893589.v1
title: Germline missense MSH2 pathogenic variants

description: Molecular dynamics simulation of the pathogenic variants based on the ClinVar database, the simulation is up to 100 ns.
DOI: 10.6084/m9.figshare.26312011.v1
title: Supplementary tables of results from systematic reviews and meta-analyses

description: Information from the systematic analysis of Chagas Disease treatment possibilities applied to preclinical research with animal models.
DOI: 10.6084/m9.figshare.7969961.v2
title: Blooms for Bees dataset

description: Bumblebee sightings submitted to the Blooms for Bees project by members of the general public. Identifications checked by experts against photos submitted with the sighting records.
DOI: 10.17632/htxh9gft6g
title: Klipriviersberg Group demagnetization data

description: The dataset contains demagnetization data and least squares analyses data for samples of the Klipriviersberg Group (as .sam and .lsq format).
DOI: 10.17632/nnr7xnfybc
title: Seawater chemical parameters in April 2023 in the Bohai and Yellow Seas

description: This data supports the article "Acidification state and interannual variability in marginal sea: A case study of the Bohai and the Yellow Seas surface waters in April 2023". The data was collected from April 12 to April 28, 2023, by R/V Blue Ocean 101, covering a total of 46 stations. Parameters measured include surface and bottom temperature, salinity, pH (Total scale), TA, DIC, Ωarag, NO3-, PO43-, NO2-, NH4+, SIO3-, DO, DO%, Chl-a, and other related parameters. Additionally, this dataset includes data for correlation analysis.
DOI: 10.6084/m9.figshare.21558324.v1
title: Supplementary Material for: Hybrid laparo-endoscopic resection of submucosal cardial tumors assisted by flexible articulated instruments

description: We report a new surgical method in 10 patients that underwent hybrid laparo-endoscopic resection (HLER) of submucosal tumors with the combination of flexible articulated laparoscopic instruments (FALI). We have assessed technical reproducibility, safety and morbidity. Resection was completed in all cases. Mean surgical time was 60 minutes (30-85). Median tumor size was 16 mm (12-30). The more frequent location was gastroesophageal junction. No complications were observed during the procedure. Length of stay was 1 day in all cases. We have found HLER to be a safe procedure allowing margin resection and organ preservation. The addition of FALI added ease of performance in hard-to-reach tumor locations.
DOI: 10.6084/m9.figshare.25132418.v2
title: Supplement for "Phylogenomic analysis of the <i>Candida auris-Candida </i><i>haemuli</i><i> </i>clade and related taxa in the <i>Metschnikowiaceae”</i>

description: Supplement for "Phylogenomic analysis of the <i>Candida auris-Candida </i><i>haemuli</i><i> </i>clade and related taxa in the <i>Metschnikowiaceae”</i>
DOI: 10.6084/m9.figshare.25907659.v1
title: Viniculture archaeological and modern datasets

description: Modern and archaeological datasets used in Bouby et al. paper. Datasets are shared as full matrices of Fourier coefficients (two views) and covariables/cofactors. File format are provided as .rda (of Momocs' OutCoe format) and .yml.
DOI: 10.6084/m9.figshare.29161766.v1
title: <b>Data file 3.</b> Genome quality based on CheckM analysis (v1.2.3)

description: Genome quality based on CheckM analysis (v1.2.3)
DOI: 10.6084/m9.figshare.4003401.v1
title: Social media policy document database

description: This dataset is connected to the following journal article: Pasquini, L. A., & Evangelopoulos, N. (2016). Sociotechnical stewardship in higher education: A field study of social media policy documents. <i>Journal of Computing in Higher Education.</i> To prepare this database for publication, this corpus was reviewed to determine if document items (URLs, PDF, or Word documents) shared online were the same, updated, or removed. This dataset now presents readers with the direct link to the specific higher education institution social media policy document, if it was still available or updated at the time of publication.