cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19652553
title: AbEMap results: Confusion Matrix for AF2 folded (with NO templates) Ab inputs

description: The summary confusion matrix (residue based) for the epitope mapping done by AbEMap on the 40 antigens in BM5 with antibody structure modelled by AlphaFold without any template. The text file contains the True Positive (TP), False Positive (FP), False Negative (FN) and True Negative (TN) counts for each antibody-antigen complex at different residue ranking thresholds (Top1, Top5, Top10, ... Top120).
DOI: 10.6084/m9.figshare.19652553.v2
title: AbEMap results: Confusion Matrix for AF2 folded (with NO templates) Ab inputs

description: The summary confusion matrix (residue based) for the epitope mapping done by AbEMap on the 40 antigens in BM5 with antibody structure modelled by AlphaFold without any template. The text file contains the True Positive (TP), False Positive (FP), False Negative (FN) and True Negative (TN) counts for each antibody-antigen complex at different residue ranking thresholds (Top1, Top5, Top10, ... Top120).
DOI: 10.6084/m9.figshare.19652553.v1
title: AbEMap results: Confusion Matrix for AF2 folded (with NO templates) Ab inputs

description: The summary confusion matrix (residue based) for the epitope mapping done by AbEMap on the 40 antigens in BM5 with antibody structure modelled by AlphaFold without any template. The text file contains the True Positive (TP), False Positive (FP), False Negative (FN) and True Negative (TN) counts for each antibody-antigen complex at different residue ranking thresholds (Top1, Top5, Top10, ... Top120).
DOI: 10.6084/m9.figshare.19652646
title: AbEMap results: Confusion matrix for AF2 folded (with template) Ab inputs

description: The summary confusion matrix (residue based) for the epitope mapping done by AbEMap on the 40 antigens in BM5 with antibody structure modelled by AlphaFold with selected templates only. The text file contains the True Positive (TP), False Positive (FP), False Negative (FN) and True Negative (TN) counts for each antibody-antigen complex at different residue ranking thresholds (Top1, Top5, Top10, ... Top120).
DOI: 10.6084/m9.figshare.19652646.v2
title: AbEMap results: Confusion matrix for AF2 folded (with template) Ab inputs

description: The summary confusion matrix (residue based) for the epitope mapping done by AbEMap on the 40 antigens in BM5 with antibody structure modelled by AlphaFold with selected templates only. The text file contains the True Positive (TP), False Positive (FP), False Negative (FN) and True Negative (TN) counts for each antibody-antigen complex at different residue ranking thresholds (Top1, Top5, Top10, ... Top120).
DOI: 10.6084/m9.figshare.19652646.v1
title: AbEMap results: Confusion matrix for AF2 folded (with template) Ab inputs

description: The summary confusion matrix (residue based) for the epitope mapping done by AbEMap on the 40 antigens in BM5 with antibody structure modelled by AlphaFold with selected templates only. The text file contains the True Positive (TP), False Positive (FP), False Negative (FN) and True Negative (TN) counts for each antibody-antigen complex at different residue ranking thresholds (Top1, Top5, Top10, ... Top120).
DOI: 10.26093/cds/vizier.36250087
title: Ultra-massive white dwarfs evolution models

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'The evolution of ultra-massive white dwarfs.' (bibcode: 2019A&A...625A..87C)
DOI: 10.26093/cds/vizier.36250094
title: YSOs in early-type dwarf galaxies

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'Young stellar populations in early-type dwarf galaxies; occurrence, radial extent, and scaling relations.' (bibcode: 2019A&A...625A..94H)
DOI: 10.26093/cds/vizier.36250099
title: WR11 field at decimeter wavelengths

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'Investigation of the WR11 field at decimeter wavelengths.' (bibcode: 2019A&A...625A..99B)
DOI: 10.26093/cds/vizier.36259013
title: TESS light curve of beta Pictoris

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'Transiting exocomets detected in broadband light by TESS in the beta Pictoris system.' (bibcode: 2019A&A...625L..13Z)
DOI: 10.26093/cds/vizier.36259008
title: SN 2017jfs optical and NIR light curves

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'The evolution of luminous red nova AT 2017jfs in NGC 4470.' (bibcode: 2019A&A...625L...8P)
DOI: 10.26093/cds/vizier.36260100
title: M-type AGB stars wind and dust models

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'An extensive grid of DARWIN models for M-type AGB stars. I. Mass-loss rates and other properties of dust-driven winds.' (bibcode: 2019A&A...626A.100B)
DOI: 10.26093/cds/vizier.36260104
title: LOTAAS pulsar discoveries

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'The LOFAR Tied-Array All-Sky Survey (LOTAAS): Survey overview and initial pulsar discoveries.' (bibcode: 2019A&A...626A.104S)
DOI: 10.26093/cds/vizier.36260011
title: Corona Australis ALMA and X-Shooter data

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'ALMA survey of Class II protoplanetary disks in Corona Australis: a young region with low disk masses.' (bibcode: 2019A&A...626A..11C)
DOI: 10.26093/cds/vizier.36260111
title: Proxima Cen flare activity temporal changes

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'Temporal changes of the flare activity of Proxima Centauri.' (bibcode: 2019A&A...626A.111P)
DOI: 10.26093/cds/vizier.36260112
title: Halo oxygen-rich AGB stars catalog

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'A catalogue of oxygen-rich pulsating giants in the Galactic halo and the Sagittarius stream.' (bibcode: 2019A&A...626A.112M)
DOI: 10.6084/m9.figshare.7101713
title: Study of the anti-penetration performance of concrete with different coarse aggregate content

description: Abstract Deep penetration experiments were performed on five types of concrete with different coarse aggregate content. The projectile diameter was 29.9 mm, the initial velocity was 647 m/s, and the volume fraction of the coarse aggregate was between 0% and 59.0%. The damage laws and damage mechanism of the target were analyzed. The pure mortar target had the smallest radial crack origin diameter and crater depth. Too high of the coarse aggregate content led to the formation of many voids, which led to the disappearance of radial cracks, crater surface bypassing the coarse aggregate and a large reduction of crater diameter. The influence laws and mechanism of the coarse aggregate on the penetration depth were also analyzed. The increase of volume fraction of coarse aggregate was beneficial to reducing penetration depth and the increase of voids volume fraction was opposite. The penetration depth was the lowest when the volume fraction of the coarse aggregate reached the maximum and no voids formed. By modifying the static resistance stress in the Forrestal penetration formula, a penetration depth model considering the volume fractions of the coarse aggregate and voids was established. The predicted results were in good agreement with the experimental results.
DOI: 10.6084/m9.figshare.7101713.v1
title: Study of the anti-penetration performance of concrete with different coarse aggregate content

description: Abstract Deep penetration experiments were performed on five types of concrete with different coarse aggregate content. The projectile diameter was 29.9 mm, the initial velocity was 647 m/s, and the volume fraction of the coarse aggregate was between 0% and 59.0%. The damage laws and damage mechanism of the target were analyzed. The pure mortar target had the smallest radial crack origin diameter and crater depth. Too high of the coarse aggregate content led to the formation of many voids, which led to the disappearance of radial cracks, crater surface bypassing the coarse aggregate and a large reduction of crater diameter. The influence laws and mechanism of the coarse aggregate on the penetration depth were also analyzed. The increase of volume fraction of coarse aggregate was beneficial to reducing penetration depth and the increase of voids volume fraction was opposite. The penetration depth was the lowest when the volume fraction of the coarse aggregate reached the maximum and no voids formed. By modifying the static resistance stress in the Forrestal penetration formula, a penetration depth model considering the volume fractions of the coarse aggregate and voids was established. The predicted results were in good agreement with the experimental results.
DOI: 10.6084/m9.figshare.7101722
title: Dynamic crack propagation of granite subjected to biaxial confining pressure and blast loading

description: Abstract To great understanding the dynamic crack propagation of rock under in-situ stress and blasting, the static-dynamic loading experimental platform was built. With different confining pressure (0MPa, 2MPa, 4MPa, 6MPa, 8MPa) and different ratios (K) of horizontal-to-vertical pressure (0, 0.25, 0.5, 0.75, 1), nine texts have been carried out in quadrate granite samples. The dynamic strain gauges and high-speed (HS) camera were used to measure strain field and observe crack growth. According to experimental results, the centrosymmetric damage zone is generated around borehole when K=1, the circumference compressive stress is formed by confining pressure, and it reduces the circumference tensile failure by blast loading. The number and size of the broken radius significantly reduce with confining pressure increases. As K decrease from 1 to 0, the tensile stress concentration is obviously around borehole in the vertical direction, and radial cracks grow from the stress concentration zone and develop into boundary under tensile stress wave from blast loading. From the numerical analysis based on Johnson-Holmquist in AUTODYN, crack branching appear near free boundary obviously, meanwhile the radial cracks grow and run through sample by reflected wave at last. Compared to the experimental results, the evolution and final shape of cracks are agree with the experimental results, the central damage area is less than latter because JWL equation neglect the gas loading in numerical calculation.
DOI: 10.6084/m9.figshare.7101722.v1
title: Dynamic crack propagation of granite subjected to biaxial confining pressure and blast loading

description: Abstract To great understanding the dynamic crack propagation of rock under in-situ stress and blasting, the static-dynamic loading experimental platform was built. With different confining pressure (0MPa, 2MPa, 4MPa, 6MPa, 8MPa) and different ratios (K) of horizontal-to-vertical pressure (0, 0.25, 0.5, 0.75, 1), nine texts have been carried out in quadrate granite samples. The dynamic strain gauges and high-speed (HS) camera were used to measure strain field and observe crack growth. According to experimental results, the centrosymmetric damage zone is generated around borehole when K=1, the circumference compressive stress is formed by confining pressure, and it reduces the circumference tensile failure by blast loading. The number and size of the broken radius significantly reduce with confining pressure increases. As K decrease from 1 to 0, the tensile stress concentration is obviously around borehole in the vertical direction, and radial cracks grow from the stress concentration zone and develop into boundary under tensile stress wave from blast loading. From the numerical analysis based on Johnson-Holmquist in AUTODYN, crack branching appear near free boundary obviously, meanwhile the radial cracks grow and run through sample by reflected wave at last. Compared to the experimental results, the evolution and final shape of cracks are agree with the experimental results, the central damage area is less than latter because JWL equation neglect the gas loading in numerical calculation.
DOI: 10.5281/zenodo.10666880
title: Data for figures in Nature publication entitled "Controlling the helicity of light by electrical magnetization switching"
DOI: 10.5281/zenodo.10666881
title: Data for figures in Nature publication entitled "Controlling the helicity of light by electrical magnetization switching"
DOI: 10.5281/zenodo.10666737
title: SPASTIC TETROPARESIS IS A STUDY OF ANTHROPOMETRIC INDICATORS IN CHILDREN WHO ARE IN FIRST AND SECOND CHILDHOOD
DOI: 10.5281/zenodo.10666738
title: SPASTIC TETROPARESIS IS A STUDY OF ANTHROPOMETRIC INDICATORS IN CHILDREN WHO ARE IN FIRST AND SECOND CHILDHOOD
DOI: 10.6084/m9.figshare.21256660.v1
title: Additional file 10 of Comparative analysis of mitochondrial genomes of maize CMS-S subtypes provides new insights into male sterility stability

description: Additional file 10.
DOI: 10.57745/xvgdrf
title: FR_Lq2_EXTENSIF_Li_7500_CR3000_R_data.tab

description: 18-years dataset of climate and EC flux variables from a grassland under extensive management, Laqueuille, France
DOI: 10.57745/58kjfm
title: FR_Lq2_EXTENSIF_Li_7500_CR3000_R_Metadata.tab

description: Variable description of the dataset FR_Lq2_EXTENSIF_Li_7500_CR3000_R_data.csv
DOI: 10.57745/btm4gq
title: FR_Lq2_EXTENSIF_Li_7500_CR3000_Processing.zip

description: Eddy covariance data processing
DOI: 10.57745/gprefz
title: Data_processing.zip

description: Raw-data processing EddyPro and R codes of C flux post-processing
DOI: 10.57745/nayvah
title: FR_Lq2_EXTENSIF_Li_7500_CR3000_2003_2021_datasets.zip

description: Dataset products of Eddy covariance data processing
DOI: 10.57745/x1gmg5
title: FR_Lq2_EXTENSIF_Li_7500_CR3000_Processing.zip

description: Eddy covariance data processing using EddyPro software and R.
DOI: 10.57745/epn6o2
title: FR_Lq2_EXTENSIF_Li_7500_CR3000_2003_2021_Datasets.zip

description: :unav
DOI: 10.57745/oabert
title: FR_Lq2_EXTENSIF_Li_7500_CR3000_2003_2021_pre_processing_EddyPro.zip

description: Raw-data processing example using EddyPro
DOI: 10.57745/oxxhb4
title: FR_Lq2_EXTENSIF_Li_7500_CR3000_2003_2021_post_processing_R_Script.zip

description: R script with random forest models
DOI: 10.57745/qu8fye
title: FR_Lq2_EXTENSIF_Li_7500_CR3000_2003_2021_datasets.zip

description: Datasets of eddy covariance measurement in half-hourly and daily temporal resolution and related metadata
DOI: 10.57745/wbfmfb
title: FR_Lq2_EXTENSIF_Li_7500_CR3000_2003_2021_dataset_tables.zip

description: :unav
DOI: 10.57745/w57eor
title: FR_Lq2_EXTENSIF_Li_7500_CR3000_2003_2021_dataset_tables.zip

description: Datasets and metadata of the data paper https://doi.org/10.1038/s41597-023-02221-z
DOI: 10.57745/zakxtk
title: FR_Lq2_EXTENSIF_Li_7500_CR3000_2003_2021_dataset_tables.zip

description: Dataset (and respective metadata) of Eddy Convariance fluxes at half-hour and daily resolution from 2003 to 2021.
DOI: 10.6084/m9.figshare.19159234
title: Additional file 1 of Long-read sequencing of the zebrafish genome reorganizes genomic architecture

description: Additional file 1: Figure S1. Read length distribution and sequenced bases generated by each group across all libraries used in assembly generation. Figure S2. Tukey box and whiskers plot of average depth at the telomeric regions of all chromosomes in the zebrafish genome. Figure S3. Association plot of Chr 4 in ZF1 and GRCz11 assemblies illustrating many small sequence differences between the two builds. Figure S4. BUSCO analysis of GRCz11 reference assembly and ZF1 assembly using vertebrate-specific single-copy orthologs. Table S1. Chromosomal location of GRCz11 unlocalized scaffolds bearing &gt; 99% coverage in GRCz11. Table S2. Deletions mapped to insertions in ZF1 assembly. Table S3. Primers used for RT-qPCR.
DOI: 10.5066/p9p6iy21
title: Input and output data for the Precipitation-Runoff Modeling System (PRMS) used to predict seasonal water availability during 2000-2015 in the Upper Klamath River Basin, Oregon and California

description: This data release contains the model input and output data, and supporting files, from hydrologic simulations of streamflow conditions in the upper Klamath River Basin using the Precipitation-Runoff Modeling System (PRMS). The model was calibrated for the portion of the basin draining into Upper Klamath Lake. It simulates daily streamflow, snow, solar radiation, evapotranspiration, surface-water, and groundwater processes within the basin. The model calibration period spanned water years 2000 through 2015, and the model validation period spanned water years 1984 through 1999. The model was calibrated and validated using measured streamflow, snowpack, evapotranspiration, and solar radiation data sets.
DOI: 10.6084/m9.figshare.12344765.v1
title: Additional file 1 of A glycolysis-based 4-mRNA signature correlates with the prognosis and cell cycle process in patients with bladder cancer

description: Additional file 1. Risk scores, expression signature scores, TP53 mutation and mRNA subtypes of bladder cancer in the TCGA cohort.
DOI: 10.6084/m9.figshare.21256744
title: Additional file 4 of The rhizosphere bacterial community contributes to the nutritional competitive advantage of weedy rice over cultivated rice in paddy soil

description: Additional file 4. Table S2. Node names and their degree in co-occurrence network diagrams of different groups.
DOI: 10.6084/m9.figshare.21256747.v1
title: Additional file 5 of The rhizosphere bacterial community contributes to the nutritional competitive advantage of weedy rice over cultivated rice in paddy soil

description: Additional file 5. Table S3. The relative abundance of functional groups in each of the stands among weedy rice (AW), cultivated rice (AY) and cultivated rice surrounded by weedy rice (WY).
DOI: 10.5281/zenodo.10654659
title: Murmansk UFSIN News Crawl Pt.2

description: WARC files produced by a webcrawl of Murmansk UFSIN news online resource. WARC reader is necessary to view files.
DOI: 10.5281/zenodo.10654660
title: Murmansk UFSIN News Crawl Pt.2

description: WARC files produced by a webcrawl of Murmansk UFSIN news online resource. WARC reader is necessary to view files.
DOI: 10.5281/zenodo.10419193
title: Research data for "Modelling atomic and nanoscale structure in the silicon-oxygen system through active machine-learning"

description: This dataset supports the paper "Modelling atomic and nanoscale structure in the silicon-oxygen system through active machine-learning". The paper is online here:

The following files are provided:



Potential files for the complex ACE potential for Si-O and additionally for the linear and Finnis-Sinclair ACE ("potential")

Training database in a xyz file format as well as pckl.gzip with weights, which have been used for the fits. Includes also the parameter file for the DFT calculations ("database")

Parameters files, which have been used for fitting the potentials ("fitting")

Amorphous matrix embedding example script to extract the cells from the large-scale simulations as well as a script for the LAMMPS simulation to amorphize the boundaries ("amorphous_matrix_embedding")

Results of various simulations with corresponding input scripts, input structures and analysis scripts ("results")



High pressure simulations: Compression of amorphous silica up to 175 GPa, energy-volume curves, enthalpies

Phase diagram: Input files for the calculation of the free energy and scripts to analyse the data to generate a phase diagram

SiO: Contains the amorphous and partially crystalline structure files for the SiO models and the small-scale Si-SiO2 interface models. Moreover, files with structure factor data, crystallinity and interface area can be found here. 

 Surfaces: Aerogel structures, which have been shown in the paper and the small-scale amorphous surface models with corresponding DFT data. It also includes the bulk reference data of the small-scale amorphous surface models, which is necessary to calculate the surface energy.

Testsets: Include the testsets referenced in Table 1 and Supplementary Table 3.

SiO2: Contains SiO2 structural models generated by the hybrid approach and using only the ACE potential.
DOI: 10.6084/m9.figshare.21256711.v1
title: Additional file 2 of A genetic map of the chromatin regulators to drug response in cancer cells

description: Additional file 2: Table S3. CRs genetic interactions related to drug response in cancers.
DOI: 10.6084/m9.figshare.21256711
title: Additional file 2 of A genetic map of the chromatin regulators to drug response in cancer cells

description: Additional file 2: Table S3. CRs genetic interactions related to drug response in cancers.
DOI: 10.6084/m9.figshare.19159234.v1
title: Additional file 1 of Long-read sequencing of the zebrafish genome reorganizes genomic architecture

description: Additional file 1: Figure S1. Read length distribution and sequenced bases generated by each group across all libraries used in assembly generation. Figure S2. Tukey box and whiskers plot of average depth at the telomeric regions of all chromosomes in the zebrafish genome. Figure S3. Association plot of Chr 4 in ZF1 and GRCz11 assemblies illustrating many small sequence differences between the two builds. Figure S4. BUSCO analysis of GRCz11 reference assembly and ZF1 assembly using vertebrate-specific single-copy orthologs. Table S1. Chromosomal location of GRCz11 unlocalized scaffolds bearing &gt; 99% coverage in GRCz11. Table S2. Deletions mapped to insertions in ZF1 assembly. Table S3. Primers used for RT-qPCR.
DOI: 10.6084/m9.figshare.9723653
title: Additional file 1: of Impact of adaptive intensity-modulated radiotherapy on the neutrophil-to-lymphocyte ratio in patients with nasopharyngeal carcinoma

description: Patient characteristics and radiotherapy-related variables between the two groups. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.12344780
title: Additional file 4 of A glycolysis-based 4-mRNA signature correlates with the prognosis and cell cycle process in patients with bladder cancer

description: Additional file 4. Modes of interaction in PPI network.
DOI: 10.6084/m9.figshare.9723653.v1
title: Additional file 1: of Impact of adaptive intensity-modulated radiotherapy on the neutrophil-to-lymphocyte ratio in patients with nasopharyngeal carcinoma

description: Patient characteristics and radiotherapy-related variables between the two groups. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.9723692
title: Additional file 22: of Genome-wide and evolutionary analysis of the class III peroxidase gene family in wheat and Aegilops tauschii reveals that some members are involved in stress responses

description: Table S10. Differentially expressed (p&lt;0.01 and |FC|&gt;1.5) T. aestivum class III peroxidase genes under abiotic stress treatments. (XLS 47 kb)
DOI: 10.6084/m9.figshare.12344786.v1
title: Additional file 6 of A glycolysis-based 4-mRNA signature correlates with the prognosis and cell cycle process in patients with bladder cancer

description: Additional file 6. Basal_squamous and luminal subtypes in Stage II patients with bladder cancer in the TCGA cohort.