cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8208612
title: Daily Reports from the projects STIMTEC and STIMTEC-X

description: Daily Reports of the activities in the Research Mine Reiche Zeche (Freiberg, Germany) during the projects STIMTEC and STIMTEC-X
DOI: 10.6084/m9.figshare.21905211
title: Supplementary Data supporting: "Obstacle avoidance in aerial pursuit".

description: Supplementary Data supporting "Obstacle avoidance in aerial pursuit" by Caroline H. Brighton, James A. Kempton, Lydia A. France, Marco KleinHeerenbrink, Sofía Miñano, and Graham K. Taylor. Published in Current Biology (2023). https://doi.org/10.1016/j.cub.2023.06.047. The zipped folder SupplementaryData.zip contains the following data files, which are readable in MATLAB (The Mathworks Inc., Natick, MA, USA) and Excel (Microsoft Inc. Redmond, WA, USA). Please see the paper for definitions and descriptions.<br>flightsOF.matThis MATLAB workspace contains data on n=231 flights without obstacles comprising the n=128 obstacle-free training flights (flights OF001 to OF128), and the n=103 obstacle-free test flights (flights OF129 to OF231). The data are contained in the following arrays:birdPosUpsampled - [X, Y, 0] horizontal position of bird; 20 kHz spline fitbirdVelupsampled - [U, V, 0] horizontal velocity of bird; 20 kHz spline fitlurePosUpsampled - [X, Y, 0] horizontal position of lure; 20 kHz spline fitlureVelupsampled - [U, V, 0] horizontal velocity of lure; 20 kHz spline fit<br>flightsWO.matThis MATLAB workspace contains data on n=155 flights with obstacles, including the n=154 obstacle test flights (flights WO001 to WO155 excluding flight WO119). The data are contained in the following arrays:birdPosUpsampled - [X, Y, 0] horizontal position of bird; 20 kHz spline fitbirdVelupsampled - [U, V, 0] horizontal velocity of bird; 20 kHz spline fitlurePosUpsampled - [X, Y, 0] horizontal position of lure; 20 kHz spline fitlureVelupsampled - [U, V, 0] horizontal velocity of lure; 20 kHz spline fitobstaclesPos - [f, X, Y, Z] XYZ positions of all obstacle markers identified in each frame (f)<br>modelFitsSummary.xlsxThis Excel spreadsheet contains summaries of the fitted models referred to in the main text, with flights numbered according to the scheme above. The tab names refer to the relevant sections of the Results.
DOI: 10.5517/ccrnx5g
title: CCDC 705286: Experimental Crystal Structure Determination

description: Related Article: N.Singh, S.Bhattacharya, H.Noth, P.Mayer|2009|Z.Naturforsch.,B:Chem.Sci.|64|116|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.8208632
title: peltospira_delicata_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.8208631
title: peltospira_delicata_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.8208665
title: lepetodrilus_gordensis_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.8208664
title: lepetodrilus_gordensis_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.7950526
title: Time-Resolved Plasmon-Assisted Generation of Arbitrary Optical-Vortex Pulses - Dataset

description: This folder contains raw data and information to reproduce the findings of the article titled 'Time-Resolved Plasmon-Assisted Generation of Arbitrary Optical-Vortex Pulses' . Each folder corresponds to a figure in the article. Raw data is provided for the calculations along with the input file and output log of the calculation. When raw data is too large, it is possible to reproduce the calculation from the provided input file. Calculations are performed with Octopus code , the related version and commit number of the code can be retrieved from output log file provided in calculation folder.
DOI: 10.5281/zenodo.7950525
title: Time-Resolved Plasmon-Assisted Generation of Arbitrary Optical-Vortex Pulses - Dataset

description: This folder contains raw data and information to reproduce the findings of the article titled 'Time-Resolved Plasmon-Assisted Generation of Arbitrary Optical-Vortex Pulses' . Each folder corresponds to a figure in the article. Raw data is provided for the calculations along with the input file and output log of the calculation. When raw data is too large, it is possible to reproduce the calculation from the provided input file. Calculations are performed with Octopus code , the related version and commit number of the code can be retrieved from output log file provided in calculation folder.
DOI: 10.6084/m9.figshare.23823252
title: my-pkg-3

description: Dummy data to demo packaging
DOI: 10.6084/m9.figshare.23823252.v1
title: my-pkg-3

description: Dummy data to demo packaging
DOI: 10.5281/zenodo.7971154
title: DNA sequencing at picogram level to investigate life on Mars and Earth

description: For studying life within the rocks of Earth and Mars, we demonstrate, in an ISO 5 clean room, a procedure based on MinION nanopore technology that correctly identifies organisms with only 2 pg of DNA without amplification, which represents unprecedented sensitivity. The folder contains fast5 and fastq passed and failed sequencing files of all the experiments conducted to investigate ONT's MinION ability to detect and characterize extremely low biomass.
DOI: 10.5281/zenodo.7971155
title: DNA sequencing at picogram level to investigate life on Mars and Earth

description: For studying life within the rocks of Earth and Mars, we demonstrate, in an ISO 5 clean room, a procedure based on nanopore technology that correctly identifies organisms with only 2 pg of DNA without amplification, which represents unprecedented sensitivity. The folder contains fast5 and fastq passed and failed sequencing files of all the experiments conducted to investigate ONT's MinION ability to detect and characterize extremely low biomass.
DOI: 10.5281/zenodo.8208597
title: DNA sequencing at picogram level to investigate life on Mars and Earth

description: For studying life within the rocks of Earth and Mars, we demonstrate, in an ISO 5 clean room, a procedure based on MinION nanopore technology that correctly identifies organisms with only 2 pg of DNA without amplification, which represents unprecedented sensitivity. The folder contains fast5 and fastq passed and failed sequencing files of all the experiments conducted to investigate ONT's MinION ability to detect and characterize extremely low biomass.
DOI: 10.5281/zenodo.8208685
title: Active quantum flocks

description: Data used in the figures of the paper to appear under the title "Active quantum flocks". All data are written in 'csv' files.
DOI: 10.5281/zenodo.8208684
title: Active quantum flocks

description: Data used in the figures of the paper to appear under the title "Active quantum flocks". All data are written in 'csv' files.
DOI: 10.6084/m9.figshare.22723258
title: A succinate/SUCNR1-brush cell defense program in the tracheal epithelium

description: Repository file of dataset generated and/or analyzed during the study entitled '<em>A succinate/SUCNR1-brush cell defense program in the tracheal epithelium</em>'.
DOI: 10.6084/m9.figshare.23735573
title: Genomic epidemiology and multilevel genome typing of <i>Bordetella pertussis</i>

description: <i>Bordetella pertussis</i> causes pertussis (or whooping cough), a severe respiratory infectious disease in infants, although it can be prevented by whole cell and acellular vaccines. The recent pertussis resurgence in industrialised countries is partly attributed to pathogen adaptation to vaccines, while emergence of antimicrobial resistance, specifically to macrolides in China, has become a concern. Surveillance of current circulating and emerging strains is therefore vital to understand the risks they pose to public health. Although the use of genomics-based typing is increasing a genomic nomenclature for this pathogen has not been well established. Here, we implemented the multilevel genome typing (MGT) system for <i>B. pertussis</i> with five levels of resolution, which provide targeted typing of relevant lineages and discrimination of closely related strains at the finest scale. The lower resolution levels (MGT2 and MGT3) describe the distribution of major vaccine antigen alleles including <i>ptxP</i>, <i>fim3, fhaB</i> and <i>prn,</i> as well as temporal and spatial trends within the <i>B. pertussis</i> global population. Mid-resolution levels (MGT3 and MGT4) enable typing of antibiotic-resistant lineages and Prn deficient lineages within the <i>ptxP3</i> clade. The high-resolution level (MGT5) can capture finer-scale epidemiology such as outbreaks and local transmission events, with comparable resolution to existing genomic methods of strain-relatedness assessment. The scheme offers stable MGT-type assignments aiding harmonisation of typing and communication between laboratories. The scheme is available at https://mgtdb.unsw.edu.au/pertussis, is regularly updated from global data repositories and accepts public submissions. The MGT scheme provides a comprehensive, robust, and scalable system for global surveillance of <i>B. pertussis</i>.
DOI: 10.6084/m9.figshare.23735573.v2
title: Genomic epidemiology and multilevel genome typing of <i>Bordetella pertussis</i>

description: <i>Bordetella pertussis</i> causes pertussis (or whooping cough), a severe respiratory infectious disease in infants, although it can be prevented by whole cell and acellular vaccines. The recent pertussis resurgence in industrialised countries is partly attributed to pathogen adaptation to vaccines, while emergence of antimicrobial resistance, specifically to macrolides in China, has become a concern. Surveillance of current circulating and emerging strains is therefore vital to understand the risks they pose to public health. Although the use of genomics-based typing is increasing a genomic nomenclature for this pathogen has not been well established. Here, we implemented the multilevel genome typing (MGT) system for <i>B. pertussis</i> with five levels of resolution, which provide targeted typing of relevant lineages and discrimination of closely related strains at the finest scale. The lower resolution levels (MGT2 and MGT3) describe the distribution of major vaccine antigen alleles including <i>ptxP</i>, <i>fim3, fhaB</i> and <i>prn,</i> as well as temporal and spatial trends within the <i>B. pertussis</i> global population. Mid-resolution levels (MGT3 and MGT4) enable typing of antibiotic-resistant lineages and Prn deficient lineages within the <i>ptxP3</i> clade. The high-resolution level (MGT5) can capture finer-scale epidemiology such as outbreaks and local transmission events, with comparable resolution to existing genomic methods of strain-relatedness assessment. The scheme offers stable MGT-type assignments aiding harmonisation of typing and communication between laboratories. The scheme is available at https://mgtdb.unsw.edu.au/pertussis, is regularly updated from global data repositories and accepts public submissions. The MGT scheme provides a comprehensive, robust, and scalable system for global surveillance of <i>B. pertussis</i>.
DOI: 10.5281/zenodo.8208695
title: serinus_serinus_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.8208694
title: serinus_serinus_spades_01.fasta.gz

description: .
DOI: 10.6084/m9.figshare.21509817
title: The assembly and annotation files of microTom

description: we established a comprehensive database and website with genomic, transcriptomic, and metadata on microTom, which should be of great value to those who wants to adopt microTom as a model plant for research.
DOI: 10.34740/kaggle/dsv/6237589
title: Mahanagar Yatayat Transport Dataset
DOI: 10.13012/b2idb-2031816_v1
title: Modern sinistral whelk spire angles, genus Busycon

description: Spire angle data for sinistral whelks of the family Busyconidae. Data focuses on spire angles, with some data on total shell length. Locality information is present for all modern specimens.
DOI: 10.15468/dl.vc5gjn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Iberoiulus cavernicola Ceuca, 1967",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080008-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26818201.v1
title: Supplementary Material for: Expert Opinions on Uveal Melanoma: Insights from the 58th Ophthalmic Oncology Group Meeting

description: Introduction
Clear evidence for the best clinical management of uveal melanoma is lacking in some areas. Therefore, reports on expert opinions in the field can be valuable.

Methods
A questionnaire comprising 10 questions was distributed to potential participants of the 58th Ophthalmic Oncology Group Meeting in Stockholm, Sweden, in June 2024.

Results
Among 34 respondents, 13 (38%) had &gt;20 years of post-residency experience in ophthalmic oncology. The maximum recommended tumor thickness for ruthenium-106 plaque brachytherapy was 5.7 mm (SD 1.1). Twenty-three respondents (68%) indicated that radiological surveillance for metastatic disease should be conducted irrespective of primary tumor characteristics. A majority (74%) would treat a lesion with a 6 mm diameter and 1.5 mm thickness without waiting for evidence of growth if sufficient risk factors were present. Most experts did not currently recommend sampling of circulating tumor DNA (ctDNA) or circulating tumor cells (CTCs). There were no significant differences in responses based on the experience of respondents (≤20 versus &gt;20 years) or their annual volume of new cases (≤50 versus &gt;50).

Conclusion
This article reports the opinions of 34 experts in ophthalmic oncology on various contemporary topics in uveal melanoma. The responses illustrate both agreements and differences in opinions among experts.
DOI: 10.15468/dl.j4jacg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Iberoiulus breuili Ceuca, 1967",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080009-240626123714530/datasets/export for details.
DOI: 10.15468/dl.45gdw6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Thassoblaniulus simplarius Mauriès, 1985",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080011-240626123714530/datasets/export for details.
DOI: 10.15468/dl.6bjyha
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron ramipilosum T.L.Ming"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080012-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b6jscg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Occitaniulus rouchi Mauriès, 1965",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080013-240626123714530/datasets/export for details.
DOI: 10.15468/dl.dxc3q7
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Natrix natrix corsa (Hecht, 1930)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 41 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080015-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83cjg3
title: Occurrence Download

description: A dataset containing 405 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Magnolia sieboldii K.Koch"
 ]
}

 The dataset includes 405 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080014-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wr4n8u
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Vascoblaniulus cabidochei Mauriès, 1967",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080016-240626123714530/datasets/export for details.
DOI: 10.15468/dl.gnjedb
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron ramsdenianum Cowan"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080017-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ucf3bg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Rhopaloiulus cameratanus Attems, 1927",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080018-240626123714530/datasets/export for details.
DOI: 10.15468/dl.ezv6h5
title: Occurrence Download

description: A dataset containing 997 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vipera ursinii (Bonaparte, 1835)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 997 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080020-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xsz5h6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Galliobates gracilis (Ribaut, 1909)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080021-240626123714530/datasets/export for details.
DOI: 10.15468/dl.a9wzqb
title: Occurrence Download

description: A dataset containing 3852 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acanthurus achilles Shaw, 1803"
 ]
}

 The dataset includes 3852 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080019-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13364014
title: A Bibliometric Study on the Filter Bubble Phenomenon in Online Social Media Platforms
DOI: 10.5281/zenodo.13364015
title: A Bibliometric Study on the Filter Bubble Phenomenon in Online Social Media Platforms
DOI: 10.15468/dl.ssutfv
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Amphitomeus attemsi (Schubart, 1934)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 69 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080022-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bt8z35
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Macrosternodesmus palicola Brölemann, 1908",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 37 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080023-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.79mtrh
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cervus elaphus corsicanus Erxleben, 1777",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 77 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080024-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.