cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fzyksh
title: Occurrence Download

description: A dataset containing 1640 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is July",
 "TaxonKey is Anas georgica J.F.Gmelin, 1789",
 "Year 2018-2023"
 ]
}

 The dataset includes 1640 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023465-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112048274
title: Cuneiform Tablet 1913.14.0225, Spurlock 1913.14.0225

description: [Text Description:] Administrative tablet ❧ [Text or Publication Number Note:] Spurlock 1913.14.0225; CDLI P420607 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish Gray (10YR 8/2) Medium Gray (N 5.25/ 22.1% R) ❧ [Physical Object Note:] 3.1 x 3.1 x 1.9 cm (22g) ❧ [Physical Object Note:] Seal impressions
DOI: 10.15468/dl.52y2ej
title: Occurrence Download

description: A dataset containing 385023 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Living Specimen"
 ]
 },
 "Country is United States of America",
 "Geometry POLYGON((-122.02396 37.73611,-119.33508 37.73611,-119.33508 39.54936,-122.02396 39.54936,-122.02396 37.73611))",
 "HasCoordinate is true",
 {
 "or" : [
 "MediaType is Image",
 "MediaType is Audio"
 ]
 },
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 385023 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0404185-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e2wsvv
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Remusatia yunnanensis (H.Li & A.Hay) A.Hay"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101066-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.veqm8e
title: Occurrence Download

description: A dataset containing 124626 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sciurus vulgaris Linnaeus, 1758",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2022",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 124626 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0270733-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id340982.1
title: StrainInfo SI-ID 340982.1

description: StrainInfo dataset 340982 about a strain of Trichoderma reesei. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.bfxn6z
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trixis erosa Sw.",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013683-180131172636756/datasets/export for details.
DOI: 10.60712/si-id340983.1
title: StrainInfo SI-ID 340983.1

description: StrainInfo dataset 340983 about a strain of Trichoderma reesei. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id341057.1
title: StrainInfo SI-ID 341057.1

description: StrainInfo dataset 341057 about a strain of Acinetobacter lwoffii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.uxpqh9
title: Occurrence Download

description: A dataset containing 874782 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Araliaceae"
 ]
}

 The dataset includes 874782 records from 1726 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017724-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hwr5tz
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fargesia rufa T.P.Yi"
 ]
}

 The dataset includes 16 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014076-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z5dgjv
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parthenium hysterophorus",
 "Country is Mozambique",
 "HasCoordinate is true"
 ]
}

 The dataset includes 51 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042073-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8n2avy
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lobularia maritima",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042074-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhvxjx
title: Occurrence Download

description: A dataset containing 1461 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vicia multicaulis"
 ]
}

 The dataset includes 1461 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042075-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.srhexx
title: Occurrence Download

description: A dataset containing 13 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.countrycode = 'ID'
 AND (CAST(occurrence.taxonkey AS INTEGER) = 4930502 OR CAST(occurrence.acceptedtaxonkey AS INTEGER) = 4930502 OR CAST(occurrence.kingdomkey AS INTEGER) = 4930502 OR CAST(occurrence.phylumkey AS INTEGER) = 4930502 OR CAST(occurrence.classkey AS INTEGER) = 4930502 OR CAST(occurrence.orderkey AS INTEGER) = 4930502 OR CAST(occurrence.familykey AS INTEGER) = 4930502 OR CAST(occurrence.genuskey AS INTEGER) = 4930502 OR CAST(occurrence.specieskey AS INTEGER) = 4930502)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 13 records were derived from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042053-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29641083
title: Exploration of the relationship between autoimmune neurologic diseases and mental disorders: evidence from Mendelian randomization study

description: Traditional epidemiologic studies suggest that autoimmune neurologic diseases may be associated with mental disorders (MDs). We used Mendelian randomization (MR) studies to explore the causal relationship between autoimmune neurologic diseases and MDs from the genetic perspective. In our study, autoimmune neurologic diseases include multiple sclerosis (MS), neuromyelitis optica (NMO), and myasthenia gravis (MG); MDs include anxiety, major depressive disorder (MDD), attention deficit/hyperactivity disorder (ADHD), schizophrenia, and bipolar affective disorder (BIP). A two-sample MR approach was used to explore causal relationships. The inverse variance weighted (IVW) method was the primary method for MR analysis. In addition, we included all MG datasets for meta-analysis after MR analysis with ADHD. Regarding the causal effects of MDs on autoimmune neurologic diseases, our analyses revealed a causal relationship between genetically predicted ADHD and MG (OR 2.250; 95% CI 1.267–3.998; <i>p</i> = 0.006), and no potential genetic causal relationships were found between the other diseases. However, according to the MR‒Egger analysis, there was no indication of directional pleiotropy. For the causal effects of autoimmune neurologic diseases on MDs, no potential genetic causal relationships were identified between any of the diseases. We performed a meta-analysis for MG and ADHD, there was no significant genetic causal relationship between ADHD and MG (OR 1.30 (95% CI 0.95–1.79); <i>p</i> = 0.10). This study revealed that there was no genetic mechanism linking autoimmune neurologic diseases and MDs to each other. These findings provide a foundation for the prevention and treatment of comorbid conditions in clinical research.
DOI: 10.6084/m9.figshare.29641083.v1
title: Exploration of the relationship between autoimmune neurologic diseases and mental disorders: evidence from Mendelian randomization study

description: Traditional epidemiologic studies suggest that autoimmune neurologic diseases may be associated with mental disorders (MDs). We used Mendelian randomization (MR) studies to explore the causal relationship between autoimmune neurologic diseases and MDs from the genetic perspective. In our study, autoimmune neurologic diseases include multiple sclerosis (MS), neuromyelitis optica (NMO), and myasthenia gravis (MG); MDs include anxiety, major depressive disorder (MDD), attention deficit/hyperactivity disorder (ADHD), schizophrenia, and bipolar affective disorder (BIP). A two-sample MR approach was used to explore causal relationships. The inverse variance weighted (IVW) method was the primary method for MR analysis. In addition, we included all MG datasets for meta-analysis after MR analysis with ADHD. Regarding the causal effects of MDs on autoimmune neurologic diseases, our analyses revealed a causal relationship between genetically predicted ADHD and MG (OR 2.250; 95% CI 1.267–3.998; <i>p</i> = 0.006), and no potential genetic causal relationships were found between the other diseases. However, according to the MR‒Egger analysis, there was no indication of directional pleiotropy. For the causal effects of autoimmune neurologic diseases on MDs, no potential genetic causal relationships were identified between any of the diseases. We performed a meta-analysis for MG and ADHD, there was no significant genetic causal relationship between ADHD and MG (OR 1.30 (95% CI 0.95–1.79); <i>p</i> = 0.10). This study revealed that there was no genetic mechanism linking autoimmune neurologic diseases and MDs to each other. These findings provide a foundation for the prevention and treatment of comorbid conditions in clinical research.
DOI: 10.15468/dl.vxnew8
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cathorops steindachneri)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 73 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042077-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.58ma3d
title: Occurrence Download

description: A dataset containing 101685 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Arenaria interpres",
 "Year 1970-2005"
 ]
}

 The dataset includes 101685 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042042-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/zjhymwjtxv.1
title: A dataset of histopathology images of paratuberculosis disease.

description: Images of histopathology slides of normal and positive tissues (infected with paratuberculosis). The total number of images is 366 (157 negative + 209 positive)
DOI: 10.17632/gfcmdbvw65.2
title: A Multi-Stage, Pixel-Level Annotated Apple Dataset for Precision Agriculture Research

description: The dataset of apples was collected from September 2017 to October 2019 in an experimental orchard at the College of Horticulture, Northwest A&F University (Yangling, Shaanxi, China). The dataset consists of 1,128 apple images captured under varying natural lighting and weather conditions, covering multiple growth stages—from immature green apples to mature red targets—including transitional color variations. The dataset is classified into three distinct categories: immature (green), semi-mature (transitional), and mature (red). Table 1 gives a detailed description and visualization for each categories. The dataset contains 1,128 annotated images capturing apples across three developmental stages: 534 images with immature (green) apples, 316 with semi-mature (color-transitioning) apples, and 387 with mature (red) apples. The non-additive total reflects natural orchard conditions where individual images frequently contain multiple maturity stages—either three stages simultaneously or two transitional stages coexisting. This indicates that asynchronous fruit development occurs within orchards. Across all images, we annotated 2,117 distinct apple instances: 926 immature (green), 453 semi-mature (patchy coloration), and 738 mature (red) apples.
DOI: 10.15468/dl.ecxbat
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prosopis velutina",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 137 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042076-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9xebmw
title: Occurrence Download

description: A dataset containing 1257 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parthenium hysterophorus",
 "Country is Nepal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1257 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042079-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.py3t8h
title: Occurrence Download

description: A dataset containing 498 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lobularia maritima",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 498 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042078-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hxngkf
title: Occurrence Download

description: A dataset containing 18649 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Oemleria cerasiformis"
 ]
}

 The dataset includes 18649 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042081-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jp5hwn
title: Occurrence Download

description: A dataset containing 939 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parthenium hysterophorus",
 "Country is Pakistan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 939 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042080-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kcx4kp
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Tringa semipalmata)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042083-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hpvt35
title: Occurrence Download

description: A dataset containing 264818 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acrocephalus arundinaceus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 264818 records from 680 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042052-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15341195
title: Floquet realization of prethermal Meissner phase in a two-leg flux ladder

description: This repository includes data files necessary to reproduce the figures presented in both the main paper and the supplementary information.
DOI: 10.5281/zenodo.16266645
title: Files and code to replicate the analyses and figures in the manuscript "Genetics, energetics, and allostery in proteins with randomized cores and surfaces"

description: Welcome to the Zenodo repository for the following publication: Genetics, energetics, and allostery in proteins with randomized cores and surfaces by Escobedo, Voigt, Faure and Lehner, Science 2025.

This repository contains all files and code to replicate the analyses and figures associated with the publication. Code is also available at GitHub. Raw NGS fastq files are available at Gene Expression Omnibus [GEO: GSE266299] (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE266299)
DOI: 10.15468/dl.pa52s8
title: Occurrence Download

description: A dataset containing 4504 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acridotheres ginginianus",
 "Country is United Arab Emirates",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4504 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042082-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u85xx2
title: Occurrence Download

description: A dataset containing 520 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Benthodesmus elongatus"
 ]
}

 The dataset includes 520 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042084-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.upaphf
title: Occurrence Download

description: A dataset containing 9583 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eusarca confusaria"
 ]
}

 The dataset includes 9583 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042086-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rdwbqx
title: Occurrence Download

description: A dataset containing 339 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lobularia maritima",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 339 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042087-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.