cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10016500
title: Datasets and Scripts associated with "Cryptic endogenous retrovirus subfamilies in the primate lineage"

description: Scripts and datasets included here were used for the main analyses in the study of "Cryptic endogenous retrovirus subfamilies in the primate lineage".

Study abstract:

Many endogenous retroviruses (ERVs) in the human genome are primate-specific and have contributed novel cis-regulatory elements and transcripts. However, current approaches for classifying and annotating ERVs and their long terminal repeats (LTRs) have limited resolution and are inaccurate. Here, we developed a new annotation based on phylogenetic analysis and cross-species conservation. Focusing on the evolutionarily young LTR subfamilies known as MER11A/B/C, we revealed the presence of four ‘new subfamilies’, that better explain the epigenetic heterogeneity observed within the MER11 instances, suggesting a new annotation for 412 (19.8%) of these repeat elements. Furthermore, we functionally validated the regulatory potential of these four new subfamilies using a massively parallel reporter assay (MPRA), which also identified motifs associated with their differential activities. Combining MPRA with new annotations across primates revealed an ape-specific gain of SOX-related motifs through a single-nucleotide deletion. Lastly, by applying our approach across 53 simian-enriched LTR subfamilies, we defined a total of 75 new subfamilies and found that 3,807 (30.0%) instances from 26 LTR subfamilies could be categorized into a novel annotation, many of which with a distinct epigenetic profile. Thus, with our refined annotation of simian-enriched LTRs, it will be possible to better understand the evolution in primate genomes and potentially identify new roles for ERVs and their LTRs in the hosts.
DOI: 10.60712/si-id306510.2
title: StrainInfo SI-ID 306510.2

description: StrainInfo dataset 306510 about a strain of Ophiostoma distortum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306511.2
title: StrainInfo SI-ID 306511.2

description: StrainInfo dataset 306511 about a strain of Ophiostoma distortum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306512.2
title: StrainInfo SI-ID 306512.2

description: StrainInfo dataset 306512 about a strain of Ophiostoma distortum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306513.2
title: StrainInfo SI-ID 306513.2

description: StrainInfo dataset 306513 about a strain of Ophiostoma quercus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306514.2
title: StrainInfo SI-ID 306514.2

description: StrainInfo dataset 306514 about a strain of Mucidula mucida. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306515.2
title: StrainInfo SI-ID 306515.2

description: StrainInfo dataset 306515 about a strain of Phlyctema vagabunda. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306516.2
title: StrainInfo SI-ID 306516.2

description: StrainInfo dataset 306516 about a strain of Stereum hirsutum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306517.2
title: StrainInfo SI-ID 306517.2

description: StrainInfo dataset 306517 about a strain of Trametes versicolor. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306518.2
title: StrainInfo SI-ID 306518.2

description: StrainInfo dataset 306518 about a strain of Trametes versicolor. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306519.2
title: StrainInfo SI-ID 306519.2

description: StrainInfo dataset 306519 about a strain of Leptosphaerulina trifolii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306520.2
title: StrainInfo SI-ID 306520.2

description: StrainInfo dataset 306520 about a strain of Fusarium oxysporum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306521.2
title: StrainInfo SI-ID 306521.2

description: StrainInfo dataset 306521 about a strain of Cladosporium cladosporioides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306522.2
title: StrainInfo SI-ID 306522.2

description: StrainInfo dataset 306522 about a strain of Curvularia pallescens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306523.2
title: StrainInfo SI-ID 306523.2

description: StrainInfo dataset 306523 about a strain of Cadophora melinii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306524.2
title: StrainInfo SI-ID 306524.2

description: StrainInfo dataset 306524 about a strain of Pestalotiopsis versicolor. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306525.2
title: StrainInfo SI-ID 306525.2

description: StrainInfo dataset 306525 about a strain of Nigrospora sphaerica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306526.2
title: StrainInfo SI-ID 306526.2

description: StrainInfo dataset 306526 about a strain of Daldinia dennisii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306527.2
title: StrainInfo SI-ID 306527.2

description: StrainInfo dataset 306527 about a strain of Daldinia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306528.2
title: StrainInfo SI-ID 306528.2

description: StrainInfo dataset 306528 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306529.2
title: StrainInfo SI-ID 306529.2

description: StrainInfo dataset 306529 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306530.2
title: StrainInfo SI-ID 306530.2

description: StrainInfo dataset 306530 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306531.2
title: StrainInfo SI-ID 306531.2

description: StrainInfo dataset 306531 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306533.2
title: StrainInfo SI-ID 306533.2

description: StrainInfo dataset 306533 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306534.2
title: StrainInfo SI-ID 306534.2

description: StrainInfo dataset 306534 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306535.2
title: StrainInfo SI-ID 306535.2

description: StrainInfo dataset 306535 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306536.2
title: StrainInfo SI-ID 306536.2

description: StrainInfo dataset 306536 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306537.2
title: StrainInfo SI-ID 306537.2

description: StrainInfo dataset 306537 about a strain of Pyrenophora teres. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306538.2
title: StrainInfo SI-ID 306538.2

description: StrainInfo dataset 306538 about a strain of Zymoseptoria tritici. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306539.2
title: StrainInfo SI-ID 306539.2

description: StrainInfo dataset 306539 about a strain of Zymoseptoria tritici. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306540.2
title: StrainInfo SI-ID 306540.2

description: StrainInfo dataset 306540 about a strain of Zymoseptoria tritici. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306541.2
title: StrainInfo SI-ID 306541.2

description: StrainInfo dataset 306541 about a strain of Bipolaris sorokiniana. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306542.2
title: StrainInfo SI-ID 306542.2

description: StrainInfo dataset 306542 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306543.2
title: StrainInfo SI-ID 306543.2

description: StrainInfo dataset 306543 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306544.2
title: StrainInfo SI-ID 306544.2

description: StrainInfo dataset 306544 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.15468/dl.dhvhbz
title: Occurrence Download

description: A dataset containing 3087313 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tracheophyta)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is Japan"
 ]
}

 The dataset includes 3087313 records from 282 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004780-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id306545.2
title: StrainInfo SI-ID 306545.2

description: StrainInfo dataset 306545 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306546.2
title: StrainInfo SI-ID 306546.2

description: StrainInfo dataset 306546 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306547.2
title: StrainInfo SI-ID 306547.2

description: StrainInfo dataset 306547 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306548.2
title: StrainInfo SI-ID 306548.2

description: StrainInfo dataset 306548 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306549.2
title: StrainInfo SI-ID 306549.2

description: StrainInfo dataset 306549 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306550.2
title: StrainInfo SI-ID 306550.2

description: StrainInfo dataset 306550 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.15468/dl.2rs46t
title: Occurrence Download

description: A dataset containing 376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Greece",
 "OccurrenceStatus is Present",
 "TaxonKey is Pseudorasbora parva (Temminck & Schlegel, 1846)"
 ]
}

 The dataset includes 376 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004819-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id306551.2
title: StrainInfo SI-ID 306551.2

description: StrainInfo dataset 306551 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306552.2
title: StrainInfo SI-ID 306552.2

description: StrainInfo dataset 306552 about a strain of Schizophyllum commune. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306553.2
title: StrainInfo SI-ID 306553.2

description: StrainInfo dataset 306553 about a strain of Perenniporia fraxinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306554.2
title: StrainInfo SI-ID 306554.2

description: StrainInfo dataset 306554 about a strain of Perenniporia fraxinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306555.2
title: StrainInfo SI-ID 306555.2

description: StrainInfo dataset 306555 about a strain of Perenniporia fraxinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306556.2
title: StrainInfo SI-ID 306556.2

description: StrainInfo dataset 306556 about a strain of Hanseniaspora uvarum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306557.2
title: StrainInfo SI-ID 306557.2

description: StrainInfo dataset 306557 about a strain of Perenniporia fraxinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306558.2
title: StrainInfo SI-ID 306558.2

description: StrainInfo dataset 306558 about a strain of Perenniporia fraxinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306559.2
title: StrainInfo SI-ID 306559.2

description: StrainInfo dataset 306559 about a strain of Perenniporia fraxinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306560.2
title: StrainInfo SI-ID 306560.2

description: StrainInfo dataset 306560 about a strain of Perenniporia fraxinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306561.2
title: StrainInfo SI-ID 306561.2

description: StrainInfo dataset 306561 about a strain of Perenniporia fraxinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306562.2
title: StrainInfo SI-ID 306562.2

description: StrainInfo dataset 306562 about a strain of Perenniporia fraxinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306563.2
title: StrainInfo SI-ID 306563.2

description: StrainInfo dataset 306563 about a strain of Perenniporia fraxinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306564.2
title: StrainInfo SI-ID 306564.2

description: StrainInfo dataset 306564 about a strain of Perenniporia fraxinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306565.2
title: StrainInfo SI-ID 306565.2

description: StrainInfo dataset 306565 about a strain of Perenniporia fraxinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306566.2
title: StrainInfo SI-ID 306566.2

description: StrainInfo dataset 306566 about a strain of Perenniporia fraxinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306567.2
title: StrainInfo SI-ID 306567.2

description: StrainInfo dataset 306567 about a strain of Perenniporia fraxinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306568.2
title: StrainInfo SI-ID 306568.2

description: StrainInfo dataset 306568 about a strain of Perenniporia fraxinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306569.2
title: StrainInfo SI-ID 306569.2

description: StrainInfo dataset 306569 about a strain of Perenniporia fraxinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306570.2
title: StrainInfo SI-ID 306570.2

description: StrainInfo dataset 306570 about a strain of Perenniporia fraxinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306571.2
title: StrainInfo SI-ID 306571.2

description: StrainInfo dataset 306571 about a strain of Perenniporia fraxinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306572.2
title: StrainInfo SI-ID 306572.2

description: StrainInfo dataset 306572 about a strain of Trichaptum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306573.2
title: StrainInfo SI-ID 306573.2

description: StrainInfo dataset 306573 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306574.2
title: StrainInfo SI-ID 306574.2

description: StrainInfo dataset 306574 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306575.2
title: StrainInfo SI-ID 306575.2

description: StrainInfo dataset 306575 about a strain of Pyrenophora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306576.2
title: StrainInfo SI-ID 306576.2

description: StrainInfo dataset 306576 about a strain of Meyerozyma. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306577.2
title: StrainInfo SI-ID 306577.2

description: StrainInfo dataset 306577 about a strain of Meyerozyma. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306578.2
title: StrainInfo SI-ID 306578.2

description: StrainInfo dataset 306578 about a strain of Meyerozyma caribbica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.