cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34808/yw9d-zv44
title: Mercury intrusion porosimetry (MIP) results of cement pastes containing Bi2O3/Gd2O3 and silica-coated Bi2O3/Gd2O3 structures

description: Mercury intrusion porosimetry (MIP) data - curves of cement pastes containing Bi2O3/Gd2O3 and silica-coated Bi2O3/Gd2O3 structures
Measurement was performed using Quantachrome Poremaster 60. The mercury surface tension was set at 0.48 N/m and the contact angle was set to 140° upon intrusion. The specimens were placed into measurement cells and filled with mercury in a low-pressure chamber (to 0.34 MPa). Furthermore, the cells were inserted into a pressure chamber and subjected to high pressures (up to 413 MPa). 
Data access: PoreMaster (AntonPaar software) or any text editor (e.g. MS Office - Excel or notepad)
Specimen designation is associated with samples designation in the associated manuscript.
REF1001H_Merged - Control cement pasteBG1001H_Merged - BG specimenA1001H_Merged - A specimenB1001H_Merged - B specimen
DOI: 10.34808/qqy6-vb76
title: Isothermal calorimetry data for cement pastes containing pristine Bi2O3/Gd2O3 and silica-coated Bi2O3/Gd2O3 structures

description: Csv file containing raw calorimetric data determined up to 168 h (Tam Air 3 8-channel isothermal calorimeter) of cement pastes containing Bi2O3+Gd2O3 amd silica-coated Bi2O3-Gd2O3 structures. Sample designation in the .csv file is in line with sample designation in the manuscript associated with dataset.
Set 1 consists data for specimens Control and BGSet 2 consists data for specimens A and B
DOI: 10.6084/m9.figshare.25027556
title: Emission - Extension of Japan prefectural emission accounting and enrich socioeconomic data 1990 to 2020

description: A sub-set for the dataset concerning 'Extension of Japan prefectural emission accounting and enrich socioeconomic data 1990 to 2020'.
DOI: 10.6084/m9.figshare.25027556.v2
title: Emission - Extension of Japan prefectural emission accounting and enrich socioeconomic data 1990 to 2020

description: A sub-set for the dataset concerning 'Extension of Japan prefectural emission accounting and enrich socioeconomic data 1990 to 2020'.
DOI: 10.6084/m9.figshare.25027556.v1
title: Emission - Extension of Japan prefectural emission accounting and enrich socioeconomic data 1990 to 2020

description: A sub-set for the dataset concerning 'Extension of Japan prefectural emission accounting and enrich socioeconomic data 1990 to 2020'.
DOI: 10.6084/m9.figshare.25133453
title: Untitled Item

description: HyGAnno is an automated cell type annotation method designed to improve the annotation quality of single-cell ATAC-seq (scATAC-seq) data.HyGAnno transfers cell type information from well-annotated scRNA-seq references to unlabeled scATAC-seq targets by utilizing peak-level information. HyGAnno provides not only cell type annotations but also a reference-target cell graph to assist in identifying cells with low predictions, thereby enhancing the reliability of the cell annotation. HyGAnno stands out for its accuracy in cell annotation and its capacity for interpretable cell embedding, exhibiting robustness against noisy reference data and adaptability to tumor tissues.HyGAnno is developed using R and Python. For more information, please refer our manuscript "HyGAnno: Hybrid graph neural network-based cell type annotation for single-cell ATAC sequencing data".<br><br>
DOI: 10.6084/m9.figshare.25133453.v1
title: Untitled Item

description: HyGAnno is an automated cell type annotation method designed to improve the annotation quality of single-cell ATAC-seq (scATAC-seq) data.HyGAnno transfers cell type information from well-annotated scRNA-seq references to unlabeled scATAC-seq targets by utilizing peak-level information. HyGAnno provides not only cell type annotations but also a reference-target cell graph to assist in identifying cells with low predictions, thereby enhancing the reliability of the cell annotation. HyGAnno stands out for its accuracy in cell annotation and its capacity for interpretable cell embedding, exhibiting robustness against noisy reference data and adaptability to tumor tissues.HyGAnno is developed using R and Python. For more information, please refer our manuscript "HyGAnno: Hybrid graph neural network-based cell type annotation for single-cell ATAC sequencing data".<br><br>
DOI: 10.17615/9mhe-j109
title: Walker et al, Lab Animal publication - survey data 

description: This national survey aimed to identify how biomedical researchers using vertebrate animals viewed issues of significance for translational science including oversight and public engagement and to analyze how researcher characteristics and animal model choice correlate with those views. Responses from 1,187 researchers showed awareness of, and concerns about, problems of translation, reproducibility, and rigor. Surveyed scientists were nevertheless optimistic about the value of animal studies, favorable about research oversight, and reported openness with nonscientists in discussing their animal work. Differences in survey responses among researchers also point to diverse perspectives within the animal research community on these matters. Most significant was variability associated with the primary type of animal that surveyed scientists used in their work. Other significant divergence in opinion appeared based on professional role factors, including type(s) of degree held, workplace setting, type(s) of funding, experience on an Institutional Animal Care and Use Committee, as well as personal demographic characteristics of age and gender.
DOI: 10.5285/103ce019-0899-1f10-e063-6c86abc05a1d
title: Moored water sampler data (dissolved inorganic nutrients, dissolved inorganic carbon and total alkalinity) from mooring RTEB1 of the Eastern Boundary array (Rockall Trough), as part of UK OSNAP (Overturning in the Subpolar North Atlantic Programme) from May 2017 to June 2018.

description: The dataset consists of water samples collected by a moored water sampler at around 50 m depth in the eastern Rockall Trough between May 2017 and June 2018. The moored water sampler was situated on mooring RTEB1 which is the easternmost mooring of the Atlantic-wide OSNAP mooring array. The moored water sampler was deployed on cruise DY078 (2017) and recovered on AR30-04 (2018). Samples were analysed for dissolved inorganic carbon, total alkalinity, nitrite, nitrate, phosphate, and silicate. The data have been quality checked by examining intra-cruise and inter-cruise consistency using Extended Ellett Line data for the inter-cruise comparison. Mooring RTEB1 is deployed under UK OSNAP (NE/K010875/1 and NE/K010875/2). Sample analysis was funded by the European Union’s Horizon 2020 Research and Innovation Programme under grant agreement no. 818123 (iAtlantic).
DOI: 10.5281/zenodo.10533304
title: Data for "Viscoelastic amplification of the pull-off stress in the detachment of a rigid flat punch from an adhesive soft viscoelastic layer"

description: This dataset contains all the data generated for the publication

[1] Ali Maghami, Michele Tricarico, Michele Ciavarella, Antonio Papangelo, Viscoelastic amplification of the pull-off stress in thedetachment of a rigid flat punch from an adhesive soft viscoelastic layer, Engineering Fracture Mechanics, (2024), https://doi.org/10.1016/j.engfracmech.2024.109898. 

The provided data are those which appear in the figures of Ref. [1]. Data are stored using informative named structures in a ".mat" file. The data are easily accessible through the Commercial Software MATLAB (© 1994-2023 The MathWorks, Inc.) or by using the free software GNU Octave. An exemplary code for loading and plotting the data contained in "data_FlatPunchOnLayer_v2.mat" is the following:

%%%%%%%%%%%%%



clc

clearvars

 

close all

 

 

% Create a new figure

load('data_FlatPunchOnLayer_v2.mat');

 

 

figure

 

% Choose one of the following names:

% ''Fig4a'' ''Fig4b'' ''Fig5'' ''Fig6''

% ''Fig7a1'' ''Fig7a2'' ''Fig7b1'' ''Fig7b2'' ''Fig7c1'' ''Fig7c2''

% ''Fig8'' ''Fig9'' ''Fig10' ''Fig11''

 

name=Fig10;

 

% Plot the data from the structure

 

 

for i = 1:numel(name.x) hold on

 

x_cell = name.x(i);

y_cell = name.y(i);

x = cell2mat(x_cell);

y = cell2mat(y_cell);

 

plot(x, y);

end


%%%%%%%%%%%%%

The code can be easily adapted for plotting the curves of all the figures contained in Ref. [1].
DOI: 10.5281/zenodo.10533305
title: Data for "Viscoelastic amplification of the pull-off stress in the detachment of a rigid flat punch from an adhesive soft viscoelastic layer"

description: This dataset contains all the data generated for the publication

[1] Ali Maghami, Michele Tricarico, Michele Ciavarella, Antonio Papangelo, Viscoelastic amplification of the pull-off stress in thedetachment of a rigid flat punch from an adhesive soft viscoelastic layer, Engineering Fracture Mechanics, (2024), https://doi.org/10.1016/j.engfracmech.2024.109898. 

The provided data are those which appear in the figures of Ref. [1]. Data are stored using informative named structures in a ".mat" file. The data are easily accessible through the Commercial Software MATLAB (© 1994-2023 The MathWorks, Inc.) or by using the free software GNU Octave. An exemplary code for loading and plotting the data contained in "data_FlatPunchOnLayer_v2.mat" is the following:

%%%%%%%%%%%%%



clc

clearvars

 

close all

 

 

% Create a new figure

load('data_FlatPunchOnLayer_v2.mat');

 

 

figure

 

% Choose one of the following names:

% ''Fig4a'' ''Fig4b'' ''Fig5'' ''Fig6''

% ''Fig7a1'' ''Fig7a2'' ''Fig7b1'' ''Fig7b2'' ''Fig7c1'' ''Fig7c2''

% ''Fig8'' ''Fig9'' ''Fig10' ''Fig11''

 

name=Fig10;

 

% Plot the data from the structure

 

 

for i = 1:numel(name.x) hold on

 

x_cell = name.x(i);

y_cell = name.y(i);

x = cell2mat(x_cell);

y = cell2mat(y_cell);

 

plot(x, y);

end


%%%%%%%%%%%%%

The code can be easily adapted for plotting the curves of all the figures contained in Ref. [1].
DOI: 10.57770/n2nher
title: Characterization and Predictors of Fractures Following Hematopoietic Stem Cell Transplantation

description: Context: Bone loss and fractures are common and serious complications following hematopoietic stem cell transplantation (HSCT), and identifying risk predictors for fractures in transplant recipients remains challenging. The Taiwan Bone Marrow Donation Center is the largest databank of donors in Asia. However, no population-based studies have yet been conducted in Asia to accurately assess the risk of fractures. Objective: The aims of this study were to determine the incidence and risk factors for fractures in HSCT recipients. Methods: We conducted a retrospective cohort study of patients older than 18 years who received a HSCT from January 1, 2003 to September 30, 2015, using the Taiwan National Health Insurance Research Database. Fractures following HSCT were identified using International Classification of Diseases, Ninth Revision, Clinical Modification codes. Cox regression analysis was used to identify risk factors for fractures. Results: A total of 3327 patients underwent a HSCT, of whom 126 (3.8%) had a fracture after HSCT. The cumulative incidence of fractures was 5.3% at 5 years, and 10.8% at 10 years. Multivariable analysis showed that a fracture in the 3 years prior to transplant (HR = 3.79; 95% CI 2.39-6.03) was associated with a higher risk of fractures post HSCT. With a daily dose equivalent of more than 0.50-3.75 mg, more than 3.75-15.23 mg, and more than 15.23 mg prednisolone, the risk of fractures increased by 1.70-fold (95% CI 1.07-2.71), 2.23-fold (95% CI 1.32-3.76), and 2.93-fold (95% CI 1.43-6.01), respectively. Conclusions: Regular screening to monitor bone loss should be initiated early, and counseling about the importance of general preventive measures for bone loss is warranted in HSCT recipients with a prior fracture and mean daily dose of steroids more than 0.50 mg.
DOI: 10.6084/m9.figshare.25027589
title: Emission per capita - Extension of Japan prefectural emission accounting and enrich socioeconomic data 1990 to 2020

description: A sub-set for the dataset concerning 'Extension of Japan prefectural emission accounting and enrich socioeconomic data 1990 to 2020'.
DOI: 10.6084/m9.figshare.25027589.v2
title: Emission per capita - Extension of Japan prefectural emission accounting and enrich socioeconomic data 1990 to 2020

description: A sub-set for the dataset concerning 'Extension of Japan prefectural emission accounting and enrich socioeconomic data 1990 to 2020'.
DOI: 10.6084/m9.figshare.25027589.v1
title: Emission per capita - Extension of Japan prefectural emission accounting and enrich socioeconomic data 1990 to 2020

description: A sub-set for the dataset concerning 'Extension of Japan prefectural emission accounting and enrich socioeconomic data 1990 to 2020'.
DOI: 10.6084/m9.figshare.22581370
title: Emission per gdp - Extension of Japan prefectural emission accounting and enrich socioeconomic data 1990 to 2020

description: A sub-set for the dataset concerning 'Extension of Japan prefectural emission accounting and enrich socioeconomic data 1990 to 2020'.
DOI: 10.6084/m9.figshare.22581370.v2
title: Emission per gdp - Extension of Japan prefectural emission accounting and enrich socioeconomic data 1990 to 2020

description: A sub-set for the dataset concerning 'Extension of Japan prefectural emission accounting and enrich socioeconomic data 1990 to 2020'.
DOI: 10.6084/m9.figshare.22581370.v1
title: Emission per gdp - Extension of Japan prefectural emission accounting and enrich socioeconomic data 1990 to 2020

description: A sub-set for the dataset concerning 'Extension of Japan prefectural emission accounting and enrich socioeconomic data 1990 to 2020'.
DOI: 10.5519/qd.ruh5k0xa
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (197 records)
DOI: 10.5281/zenodo.10057343
title: Is the isotopic composition of precipitation a robust indicator for reconstructions of past tropical cyclones frequency? A case study on Réunion Island from rain and water vapor isotopic observations

description: Isotopic composition of precipitation and water vapor and LMDZ-iso and ECHAM6-wiso simulations associated with the manuscript:

Françoise Vimeux, Camille Risi, Christelle Barthe, Sören François, Alexandre Cauquoin, Olivier Jossoud, Jean-Marc Metzger, Olivier Cattani, Bénédicte Minster, and Martin Werner (2024). Is the isotopic composition of precipitation a robust indicator for reconstructions of past tropical cyclones frequency? A case study on Réunion Island from rain and water vapor isotopic observations. Journal of Geophysical Research: Atmospheres, 129, e2023JD039794. https://doi.org/10.1029/2023JD039794
DOI: 10.5281/zenodo.10057344
title: Is the isotopic composition of precipitation a robust indicator for reconstructions of past tropical cyclones frequency? A case study on Réunion Island from rain and water vapor isotopic observations

description: Isotopic composition of precipitation and water vapor and LMDZ-iso and ECHAM6-wiso simulations associated with the manuscript:

Françoise Vimeux, Camille Risi, Christelle Barthe, Sören François, Alexandre Cauquoin, Olivier Jossoud, Jean-Marc Metzger, Olivier Cattani, Bénédicte Minster, and Martin Werner (2024). Is the isotopic composition of precipitation a robust indicator for reconstructions of past tropical cyclones frequency? A case study on Réunion Island from rain and water vapor isotopic observations. Journal of Geophysical Research: Atmospheres, 129, e2023JD039794. https://doi.org/10.1029/2023JD039794
DOI: 10.5281/zenodo.10604354
title: Fish bone assamblage Kökar 1450-1530
DOI: 10.17615/mbt8-r443
title: Impact of nutrient warnings in Colombia: A randomized controlled trial

description: These data were collected from an online convenience quota sample of adults in Colombia, and were used to assess nutrient warnings' impact on participants' product selection and identification of food products high in nutrients of concern (saturated fat, sugar, and sodium).
DOI: 10.6084/m9.figshare.25133492
title: Codes and datasets for project HyGAnno

description: HyGAnno is an automated cell type annotation method designed to improve the annotation quality of single-cell ATAC-seq (scATAC-seq) data.HyGAnno transfers cell type information from well-annotated scRNA-seq references to unlabeled scATAC-seq targets by utilizing peak-level information. HyGAnno provides not only cell type annotations but also a reference-target cell graph to assist in identifying cells with low predictions, thereby enhancing the reliability of the cell annotation. HyGAnno stands out for its accuracy in cell annotation and its capacity for interpretable cell embedding, exhibiting robustness against noisy reference data and adaptability to tumor tissues.HyGAnno is developed using R and Python. For more information, please refer our manuscript "HyGAnno: Hybrid graph neural network-based cell type annotation for single-cell ATAC sequencing data".<br><br>
DOI: 10.5281/zenodo.10606460
title: Estonian_Holstein_bovine_PRDL_TF_genes_SNVs
DOI: 10.5281/zenodo.10606461
title: Estonian_Holstein_bovine_PRDL_TF_genes_SNVs
DOI: 10.5519/qd.tp85bfp2
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (197 records)
DOI: 10.6084/m9.figshare.25125308
title: Trace element partitioning between saline aqueous fluids and subducted metasediments, and the origin of the “sediment fingerprint” in arc magmas

description: This item is a dataset attached to the article "Trace element partitioning between saline aqueous fluids and subducted metasediments, and the origin of the 'sediment fingerprint' in arc magmas" by Marija Putak Juricek, Andreas Audetat and Hans Keppler.
DOI: 10.6084/m9.figshare.25125308.v1
title: Supporting_data

description: This item is a dataset attached to the article "Trace element partitioning between saline aqueous fluids and subducted metasediments, and the origin of the 'sediment fingerprint' in arc magmas" by Marija Putak Juricek, Andreas Audetat and Hans Keppler.
DOI: 10.5519/qd.v0tpdee8
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5397192 records)
DOI: 10.17615/vc80-q305
title: Student Evaluations of Ethics and Humanism at the UNC SOM Asheville Campus

description: The three datasets in this folder are student evaluations at the end of a year of part of the SHS4 course, "Ethics and Humanism" - at the UNC SOM Asheville Campus, from 2020-21, 2019-20, and 2017-18
DOI: 10.17615/a4hj-4w45
title: Factors contributing to repository success in recruiting data deposits Dataset

description: The de-identified dataset used for this publication.
DOI: 10.17615/s6ps-qx27
title: Appendix D: Code Files

description: The R code (create-analysis-data.R) with which analysis was performed and the markdown file (Analysis.Rmd) with which tables and graphs were created.
DOI: 10.3886/e198062
title: The effect of education on economic institutions

description: Data used.
DOI: 10.3886/e198062v1
title: The effect of education on economic institutions

description: Data used.
DOI: 10.6084/m9.figshare.25133549
title: Supplementary Material for: Impact of dysmagnesemia on atrial fibrillation in maintenance hemodialysis patients: a nationwide study

description: Introduction: The dose-response relationship between serum magnesium (sMg) and atrial fibrillation (AF) and the contribution of dysmagnesemia to AF among hemodialysis patients remain unknown. Hence, we examined the dose-response correlation between sMg and AF and estimated the extent of the contribution of dysmagnesemia to AF in this population.
Methods: This was a nationwide cross-sectional study on the Japanese Society for Dialysis Therapy registry, also known as Japanese Renal Data Registry (JRDR), encompassing a nationwide population of dialysis centers, as of the end of 2019. Eligible participants were adult patients undergoing hemodialysis three times per week. The main exposure was sMg, categorized into seven categories (≤1.5, &gt;1.5–≤2, &gt;2–≤2.5, &gt;2.5–≤3, &gt;3–≤3.5, &gt;3.5–≤4, and ≥4.0 mg/dL). The outcome was AF reported by dialysis facilities. The independent contribution to AF was assessed via logistic regression to generate population-attributable fractions, assuming a causal relationship between sMg and AF. 
Results: Total 165,926 patients from 2,549 facilities were investigated. AF prevalence was 7.9%. Compared with the reference (&gt;2.5–≤3 mg/dL), lower sMg was associated with increased AF (adjusted odds ratios [ORs] [95% confidence interval, CI] of 1.49 [1.19–1.85], 1.24 [1.17–1.32], and 1.11 [1.06–1.16] for sMg of ≤1.5, &gt;1.5–≤2.0, and &gt;2.0–≤2.5 mg/dL categories, respectively). Elevated sMg was associated with fewer AF (adjusted OR 0.87 [95% CI, 0.79–0.96] for sMg of &gt;3.0–≤3.5 mg/dL). The adjusted population-attributable fraction of lower sMg and higher and lower sMg for AF was 7.4% and 6.9%, respectively. An association did indeed exist between lower sMg and AF, with the lowest percentages of AF at sMg levels above the reference range for the general population. 
Conclusion: Dysmagnesemia may be an important contributor to AF among adult hemodialysis patients. Further longitudinal studies are warranted to determine whether sMg correction reduces the AF incidence.
DOI: 10.6084/m9.figshare.25133549.v1
title: Supplementary Material for: Impact of dysmagnesemia on atrial fibrillation in maintenance hemodialysis patients: a nationwide study

description: Introduction: The dose-response relationship between serum magnesium (sMg) and atrial fibrillation (AF) and the contribution of dysmagnesemia to AF among hemodialysis patients remain unknown. Hence, we examined the dose-response correlation between sMg and AF and estimated the extent of the contribution of dysmagnesemia to AF in this population.
Methods: This was a nationwide cross-sectional study on the Japanese Society for Dialysis Therapy registry, also known as Japanese Renal Data Registry (JRDR), encompassing a nationwide population of dialysis centers, as of the end of 2019. Eligible participants were adult patients undergoing hemodialysis three times per week. The main exposure was sMg, categorized into seven categories (≤1.5, &gt;1.5–≤2, &gt;2–≤2.5, &gt;2.5–≤3, &gt;3–≤3.5, &gt;3.5–≤4, and ≥4.0 mg/dL). The outcome was AF reported by dialysis facilities. The independent contribution to AF was assessed via logistic regression to generate population-attributable fractions, assuming a causal relationship between sMg and AF. 
Results: Total 165,926 patients from 2,549 facilities were investigated. AF prevalence was 7.9%. Compared with the reference (&gt;2.5–≤3 mg/dL), lower sMg was associated with increased AF (adjusted odds ratios [ORs] [95% confidence interval, CI] of 1.49 [1.19–1.85], 1.24 [1.17–1.32], and 1.11 [1.06–1.16] for sMg of ≤1.5, &gt;1.5–≤2.0, and &gt;2.0–≤2.5 mg/dL categories, respectively). Elevated sMg was associated with fewer AF (adjusted OR 0.87 [95% CI, 0.79–0.96] for sMg of &gt;3.0–≤3.5 mg/dL). The adjusted population-attributable fraction of lower sMg and higher and lower sMg for AF was 7.4% and 6.9%, respectively. An association did indeed exist between lower sMg and AF, with the lowest percentages of AF at sMg levels above the reference range for the general population. 
Conclusion: Dysmagnesemia may be an important contributor to AF among adult hemodialysis patients. Further longitudinal studies are warranted to determine whether sMg correction reduces the AF incidence.
DOI: 10.25345/c5qr4p21s
title: MassIVE MSV000093981 - IP MS analysis of N4BP1 complex isolated from HEK293 cell line
title: IP-MS analysis of N4BP1 complex isolated from HEK293 cell line. N4BP1 RNase forms a complex with ECD4 and decapping proteins. We used three methods for extraction of proteins for MS analysis. Two IP-MS data sets were obtained against N4BP1 fused to the Fc tag (N4BP1Fc met - methanol precipitation; N4BP1Fc SP3 - extraction of proteins on SP3 column) and one data set against N4BP1 fused to GFP (N4BP1GFP SP3).