cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22544086.v2
title: supplementary data for research study titled "Pro-inflammatory cytokines IL-1α, IL-6 and TNF-α in major depressive disorder: Sex-specific associations with psychological symptoms"

description: supplementary data for research title "Pro-inflammatory cytokines IL-1α, IL-6 and TNF-α in major depressive disorder: Sex-specific associations with psychological symptoms"
DOI: 10.6084/m9.figshare.7571078.v1
title: Mapping population distributions, demographics and dynamics

description: 20 minute lightning talk presentation given by Andrew Tatem, from the University of Southampton, and WorldPop, at the Better Science through Better Data 2018 event. The video recording, and scribe are included.
DOI: 10.17632/4cpbyhypc9
title: ARID1B controls transcriptional programs of axon projection in an organoid model of the human corpus callosum

description: Publication: Martins-Costa et al., "ARID1B controls transcriptional programs of axon projection in an organoid model of the human corpus callosum", Cell Stem Cell, 2024.
Data provided:
- Raw Western Blot images.
- All small datasets generated in the study.
DOI: 10.17632/n9tfznp8pn
title: Association between polygenic risk score for prostate cancer and the gut microbiota. Hatano K, et al.

description: We evaluated the polygenic risk scores related to prostate cancer using genotyping data from 60 healthy controls and 106 prostate cancer patients.
DOI: 10.6084/m9.figshare.25200857.v1
title: <b>The Psychometric Properties of Academic Perfectionism Scale: a Study of an Iranian Sample</b>

description: This study investigated the psychometric properties of the College Academic Perfectionism Scale (CAPS) in Iranian society.
DOI: 10.6084/m9.figshare.25902151.v1
title: Moss biocrusts physiological index.xlsx

description: We studied the effect of the litter covering on biocrust-forming mosses on the northern Chinese Loess Plateau over four-month period. We used litter from shrubs of <i>Artemisia ordosica</i> and <i>Caragana korshinskii</i> with two levels of litter “thickness”, and monitored moss greenness, and several indicators of moss physiological activity.We found litter covering reduced moss greenness, content of chlorophyll a and b, soluble sugar, and soluble protein, suggesting a reduced photosynthetic and metabolic activity of mosses under litter cover. On the other hand, mosses covered by litter showed higher contents of malondialdehyde, proline, and catalase activity compared to those mosses without any litter cover, suggesting that litter covering increased oxidative stress in mosses and triggered a protective response against oxidative damage. These results demonstrated the detrimental effects of litter covering on biocrust-forming mosses’ physiological activity. Moreover, we found litter thickness exerted a more significant impact than litter type.
DOI: 10.6084/m9.figshare.27075145.v5
title: CNSIF_Monthly_2003-2022

description: A 500m spatial resolution monthly SIF dataset for the China region (CNSIF) from 2003 to 2022, using a data-driven deep learning approach based on high-resolution apparent reflectance and thermal infrared data.
DOI: 10.6084/m9.figshare.6698780.v1
title: Hand shape decoding (rock–paper–scissors)

description: This is fMRI data from a human subject who changed shape of his right hand (rock-, paper-, or scissor-shape). The dataset includes preprocessed BOLD signals of voxels in cerebellum (CB), primary motor cortex (M1), and supplementary motor area (SMA).
DOI: 10.17632/jrsy7537g4
title: Data for: Evolution of the external quantum efficiency of Si-based PV minimodules with encapsulated down-shifters and aged under UV radiation

description: Raw data of the manuscript (EQE spectra and UV degradation)
DOI: 10.17632/ky2sh6br7f
title: Content validation of Comprehensive knee osteoarthritis index (CKOAI) scoring items by online Delphi method

description: The content validation of identified items identified by In-depth direct interview and extensive literature survey were executed by the online Delphi method. This Delphi method involved panel of 10 experts in the field of physiotherapy who had at least minimum 10 years of clinical experience from different geographical location to represent and identify the patient need. They were asked to agree or disagree with items and domains listed for validate. 80% of agreement on items and domains listed for validate between the experts was fixed in recommendation by Lynn to yield the item-level content validation index (I-CVI) of 0.80. Thus total two rounds of online Delphi method were executed to validate the items identified by In-depth direct interview and extensive literature survey related to individuals with knee osteoarthritis.
DOI: 10.6084/m9.figshare.16585550.v1
title: Supplementary Material for: Improving Chemotherapy-Induced Peripheral Neuropathy in Patients with Breast or Colon Cancer after End of (Neo)adjuvant Therapy: Results from the Observational Study STEFANO

description: <b><i>Introduction:</i></b> Chemotherapy-induced peripheral neuropathy (CIPN) is a common side effect persisting after completion of neurotoxic chemotherapies. This observational study was designed to evaluate the effectiveness of the dietary supplement OnLife® (patented mixture of specific fatty acids and palmitoylethanolamide) in improving symptoms of CIPN in breast and colon cancer patients. <b><i>Methods:</i></b> Improvement of CIPN was evaluated in adult patients, previously treated with (neo)adjuvant paclitaxel- (breast cancer) or oxaliplatin-based (colon cancer) therapies, receiving OnLife® for 3 months after completion of chemotherapy. The primary endpoint was to compare the severity of peripheral sensory neuropathy (PSN) and peripheral motor neuropathy (PMN) before and at the end of OnLife® treatment. Secondary endpoints included the assessment of patient-reported quality of life and CIPN symptoms as assessed by questionnaires. <b><i>Results:</i></b> 146 patients (<i>n</i> = 75 breast cancer patients and <i>n</i> = 71 colon cancer patients) qualified for analysis; 31.1% and 37.5% of breast cancer patients had an improvement of PSN and PMN, respectively. In colon cancer patients, PSN and PMN improved in 16.9% and 20.0% of patients, respectively. According to patient-reported outcomes, 45.9% and 37.5% of patients with paclitaxel-induced PSN and PMN, and 23.9% and 22.0% of patients with oxaliplatin-induced PSN and PMN experienced a reduction of CIPN symptoms, respectively. <b><i>Conclusion:</i></b> OnLife® treatment confirmed to be beneficial in reducing CIPN severity and in limiting the progression of neuropathy, more markedly in paclitaxel-treated patients and also in patients with oxaliplatin-induced CIPN.
DOI: 10.6084/m9.figshare.25000310.v1
title: Supplementary Data Files Descriptions.docx

description: Supplementary Data
DOI: 10.6084/m9.figshare.11962764.v1
title: 3D point clouds for "Three-dimensional nanoscopy of whole cells and tissues with in situ point spread function retrieval"

description: 3D point clouds resolved by INSPR for supplementary videos 4-9
DOI: 10.6084/m9.figshare.28828610.v1
title: <b>EK-1 Öğretmenlerin ve Öğrencilerin TYMM Sınıf İçi Uygulama Deneyimi ve Görüş Anketi Açık Uçlu Sorulara Verilen Yanıtların Özetleri</b>

description: <b>EK-1 Öğretmenlerin ve Öğrencilerin TYMM Sınıf İçi Uygulama Deneyimi ve Görüş Anketi Açık Uçlu Sorulara Verilen Yanıtların Özetleri</b>
DOI: 10.6084/m9.figshare.29135525.v1
title: spadem

description: none
DOI: 10.6084/m9.figshare.14936013.v1
title: Whole-Genome Analysis of Various SARS-CoV-2 Clinical Isolates Establishes a Direct Positive Correlation between the Viral Load and Rate of Mutations

description: <b>Abstract</b><b>Objective</b> SARS-CoV-2 was first identified in China in late December 2019. To investigate its specific genomic features, whole and near-complete SARS-CoV-2 genome sequences were analyzed. <b>Methods</b> Clinical samples were collected from 18 COVID-19–positive patients and subjected to nucleic acid purification. Cell culturing was performed to extract various SARS-CoV-2 isolates. Whole-genome analysis was performed using next-generation sequencing, and phylogenetic analyses were conducted to determine genetic diversity of the various SARS-CoV-2 isolates. <b>Results</b> Thirty-two clinical samples were collected from 18 patients. The comparative analysis revealed molecular genetic evolutionary features and evolutionary dynamics of the entire genome. The next-generation sequencing data identified 8 protein-coding regions with 17 mutated proteins. The sequencing analysis identified largely invariant regions of SARS-CoV-2 genome along with 51 missense point mutations and deletions in 5¢ and 3¢ untranslated regions. The phylogenetic analysis revealed that V and GH are the dominant clades of SARS-CoV-2 circulating in the Gwangju region of South Korea. Moreover, statistical analysis confirmed a significant correlation between viral load (P &lt; 0.001) and mutation rate (P &lt; 0.0001) in 2 mutually exclusive SARS-CoV-2 clades. <b>Conclusion</b> Thus, we found novel nonsynonymous mutations throughout the whole genome of SARS-CoV-2. Furthermore, we successfully established a direct positive correlation between the viral copy number and the rate of mutations, which indicates frequent genomic alterations in SARS-CoV-2 in patients with high viral load. Our results provide an in-depth analysis of SARS-COV-2 whole genome which we believe, can point to an effective strategy for the development of vaccines and therapeutics for COVID-19.
DOI: 10.6084/m9.figshare.20304351.v1
title: Pyridoxal 5’-phosphate synthesis and salvage in Bacteria and Archaea: predicting pathway variant distributions and holes

description: Supplementary data for ‘Pyridoxal 5’-phosphate synthesis and salvage in Bacteria and Archaea: predicting pathway variant distributions and holes’ as published in Microbial Genomics. <br> ## Supplemental data 1 <br> This folder contains images of the sequence similarity network (SSN) evolution, the different proteins annotated as part of the PLP de novo synthesis or salvage pathway, and relative proteins. These proteins were detected using the 113 temporary HMM profiles created at the end of Step1 of the method and used at the beginning of Step2 (see SupMat or Figure2). <br> Each folder contains the representation of the SSN of each family of proteins with the evolution of the alignment threshold. The number of each image represents the alignment score used as a threshold (meaning that all the edges represent an alignment score &gt;= X, with X the alignment threshold). <br> In each family folder, the protein (the node inside the SSN) is colored based on the annotation made by KofamKOALA or eggNOG-Mapper v2, depending on the folder's name. <br> In case there is a Step_1 and Step_2 in the folder, a deeper analysis was done to have a more stringent alignment threshold for some clusters identified using the alignment threshold of the Step_1. This was done because some proteins are more related than others in the same family and a unique alignment threshold is not suitable to separate all the proteins inside a family. For example, epd, gapB and gapA are more connections between each other than epd and asd or argC. <br> You can also find in the folder of each family the SSN network in XML format and a tsv file containing the attribution of the protein to a cluster after selecting the appropriate alignment threshold.
DOI: 10.6084/m9.figshare.22257859.v1
title: ENCODE_HepG2_eCLIP_peak.annotation

description: ENCODE HepG2 peaks annotation using HOMER
DOI: 10.6084/m9.figshare.28123196.v1
title: Supplementary Material for: The role of reactive oxygen species in the pathogenesis of alopecia areata: a systematic review and meta-analysis.

description: Background: Alopecia areata (AA) is a T-cell-mediated autoimmune disease that significantly
impacts patient quality of life. The breakdown of hair follicle immune privilege underlies AA
pathogenesis. However, the precise mechanism of this breakdown remains unclear. This
study investigates the potential role of reactive oxygen species in AA pathogenesis.

Summary: A systematic review and meta-analysis were conducted on observational studies and
randomized controlled trials from 2000 to 2024. Studies included AA patients and measured
oxidative stress index (OSI), malondialdehyde (MDA), superoxide dismutase (SOD), glutathione
peroxidase (GSH-Px), or paraoxonase-1 (PON1). Extracted data were analyzed using the
Cochrane risk-of-bias tool and random-effects models.The review included 21 studies with 743 AA patients. OSI was elevated in AA patients (effect size = 1.58, 95% CI [0.31–2.68], p = 0.00068). MDA levels were also elevated (effect size = 1.60, 95% CI [0.43–2.6], p = 0.00023), while SOD (effect size = -0.97, 95% CI [-1.65 to -0.30], p = 0.00066) and GSH-Px (effect size = -1.41, 95% CI [-2.28 to -0.53], p = 0.00068) activities were reduced. PON1 levels showed no significant difference (effect size = -3.56, 95% CI [-8.63 to 1.51], p = 0.051).

Key Messages: The elevated OSI, MDA, and decreased antioxidant activity in AA patients
suggest a substantial role for reactive oxygen species and oxidative stress in AA
pathogenesis, highlighting oxidative stress as a potential target for therapeutic intervention.
These results underscore the importance of oxidative stress in AA and support further research
into antioxidant-based therapies.
DOI: 10.17632/bjfdw6xbxw
title: Impact of limited data availability on the accuracy of project duration estimation in project networks

description: This database includes simulated data showing the accuracy of estimated probability distributions of project durations when limited data are available for the project activities. The base project networks are taken from PSPLIB. Then, various stochastic project networks are synthesized by changing the variability and skewness of project activity durations. 
Number of variables:  20
Number of cases/rows: 114240
Variable List: 
•	Experiment ID: The ID of the experiment
•	Experiment for network: The ID of the experiment for each of the synthesized networks
•	Network ID: ID of the synthesized network
•	#Activities: Number of activities in the network, including start and finish activities
•	Variability: Variance of the activities in the network (this value can be either high, low, medium or  rand, where rand shows a random combination of low, high and medium variance in the network activities.)
•	Skewness: Skewness of the activities in the network (Skewness can be either right, left, None or  rand, where rand shows a random combination of right, left, and none skewed in the network activities)	
•	Fitted distribution type: Distribution type used to fit on sampled data
•	Sample size: Number of sampled data used for the experiment resembling limited data condition
•	Benchmark 10th percentile: 10th percentile of project duration in the benchmark stochastic project network
•	Benchmark 50th percentile: 50th project duration in the benchmark stochastic project network
•	Benchmark 90th percentile: 90th project duration in the benchmark stochastic project network
•	Benchmark mean: Mean project duration in the benchmark stochastic project network
•	Benchmark variance: Variance project duration in the benchmark stochastic project network
•	Experiment 10th percentile: 10th percentile of project duration distribution for the experiment
•	Experiment 50th percentile: 50th percentile of project duration distribution for the experiment
•	Experiment 90th percentile: 90th percentile of project duration distribution for the experiment
•	Experiment mean: Mean of project duration distribution for the experiment
•	Experiment variance: Variance of project duration distribution for the experiment
•	K-S: Kolmogorov–Smirnov test comparing benchmark distribution and project duration 
•	distribution of the experiment 
•	P_value: the P-value based on the distance calculated in the K-S test
DOI: 10.17632/nbjmt26my8
title: Data for: Global Value Chains and Inequality with Endogenous Labor Supply

description: Matlab code to calibrate parameters of model, and to run counterfactual simulations of calibrated model.
DOI: 10.6084/m9.figshare.13061693.v1
title: data Silene gene flow for repository.xlsx

description: Data of the effects of different gene flow treatments on germination time, flowering time and seedling survival of Silene ciliata.
DOI: 10.6084/m9.figshare.24316618.v1
title: SVU Slamhygienisering 2023 Resultatmatris

description: Denna fil är ett komplement till slutrapporten i projektet Slamhantering - kartläggning och utvärdering av tekniker vilken går att finna på svensktvatten.seProjektet har finansierats av Svenskt Vatten Utveckling samt VA-bolagen Uppsala Vatten & Avfall, Stockholm Avfall & Vatten, Tekniska Verken i Linköping, Roslagsvatten samt Gryaab.Projektet har genomförts av RISE Research Institutes of Sweden, IVL Svenska Miljöinstitutet och Sveriges Lantbruksuniversitet.
DOI: 10.6084/m9.figshare.24980874.v1
title: Raw Data_Did faculty development programs work? Determining factors of successful career development among clinical faculty: A database analysis study

description: Raw Data_Did faculty development programs work? Determining factors of successful career development among clinical faculty: A database analysis study
DOI: 10.6084/m9.figshare.25037078.v1
title: Supplement table2.docx

description: Suppl Table 2: The verification primer sequences for each trypsinogen.
DOI: 10.6084/m9.figshare.5439382.v2
title: Plling et al. 2017 UKB parents attained age GWAS

description: Analysis of genotypes associated with parents attained age (lifespan) in the UK Biobank. If used please reference:<br><br><b>Pilling et al. 2016. Human longevity: 25 genetic loci associated in 389,166 UK biobank participants. Aging US<br></b>http://www.aging-us.com/article/101334/text<br><br>Results are from BOLT-LMM analysis of European participants, adjusted for age, sex, assessment centre and array type.<br><br>7 phenotypes:<br>* Mothers age at death<br>* Fathers age at death<br><br>* Mothers attained age (including alive parents)<br>* Fathers attained age (including alive parents)<br><br>* Combined parents age at death<br>* Combined parents attained age (including alive parents)<br><br>* [Binary] both parents reached top 10% of survival (&gt;=90 mothers, &gt;=87 fathers) vs. both parents died before age 80<br><br>&gt;&gt; For each analysis there is an accompanying GIV dataset. The UK Biobank sample was randomly split in half, and the analysis repeated. This is for use in Genetic Instrumental Variable (GIV) Regression analysis.<br><br>Fields are as follows<br> SNP: dnSNP name of genetic marker, if available<br> CHR: chromosome<br> BP: base-pair position on CHR (hg19 / b37)<br> ALLELE1: effect allele<br> ALLELE0: non-effect allele<br> A1FREQ: frequency of ALLELE1<br> BETA: effect size from BOLT-LMM approximation to infinitesimal mixed model<br> SE: standard error of effect size<br> P_BOLT_LMM: non-infinitesimal mixed model association test p-value
DOI: 10.6084/m9.figshare.28366533.v1
title: Additional file 4 of RNA helicase MOV10 suppresses fear memory and dendritic arborization and regulates microtubule dynamics in hippocampal neurons

description: Additional file 4. Table S1. Differentially expressed genes in Mov10 Deletion hippocampi.
DOI: 10.17632/h6dnc6x75s
title: Design of Pressure Vessel for Cryogenic Applications

description: MATLAB program and APDL Program
DOI: 10.34740/kaggle/dsv/12029240
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.qcbnz5
title: Occurrence Download

description: A dataset containing 1389 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Penelope albipennis Taczanowski, 1878"
 ]
}

 The dataset includes 1389 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014383-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29207546.v1
title: Change and omission responses: Processed data files, associated metadata, experiment schematics, and data loading tutorials

description: Data files containing single cell responses to image changes and image omissions. Cell responses are computed as events extracted from calcium fluorescence traces, time aligned to the time of image changes or image omissions, and averaged across trials. Data loading tutorials and metadata files describing experimental conditions are also provided
DOI: 10.15468/dl.38yr3j
title: Occurrence Download

description: A dataset containing 874 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is one of (Chile, Argentina, Uruguay, Paraguay, Brazil, Bolivia (Plurinational State of))",
 "OccurrenceStatus is Present",
 "TaxonKey is Leopardus geoffroyi (d'Orbigny & Gervais, 1844)"
 ]
}

 The dataset includes 874 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014387-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.upe54g
title: Occurrence Download

description: A dataset containing 271613 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sagina procumbens L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 271613 records from 1103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014384-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.47grj8
title: Occurrence Download

description: A dataset containing 22041 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centrolenidae"
 ]
}

 The dataset includes 22041 records from 305 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014386-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15519616
title: 2016 - London - L1 #1

description: University of Reading  Grimmond Urban Micromet Group

City: London

Year: 2016

Sites: 

Data Levels: L1

See also: https://zenodo.org/uploads/15521655
DOI: 10.5281/zenodo.15519617
title: 2016 - London - L1 #1

description: University of Reading  Grimmond Urban Micromet Group

City: London

Year: 2016

Sites: 

Data Levels: L1

See also: https://zenodo.org/uploads/15521655
DOI: 10.15468/dl.4ajawb
title: Occurrence Download

description: A dataset containing 164549 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-75.38074 6.2151,-75.40728 6.2144,-75.41148 6.20393,-75.43034 6.20183,-75.45688 6.19974,-75.45478 6.16621,-75.48412 6.18088,-75.52114 6.19694,-75.53721 6.16202,-75.52743 6.13617,-75.55747 6.11032,-75.58261 6.0747,-75.57353 5.9818,-75.50927 5.95735,-75.47574 5.94408,-75.41357 5.94547,-75.38842 5.99996,-75.37376 6.01393,-75.36467 6.0286,-75.37026 6.04466,-75.37515 6.05863,-75.38563 6.06911,-75.38284 6.08937,-75.38284 6.11591,-75.37376 6.14735,-75.36188 6.17878,-75.34861 6.19764,-75.32765 6.20532,-75.33045 6.22488,-75.34512 6.22488,-75.34581 6.23606,-75.36188 6.22977,-75.36607 6.23746,-75.37655 6.23466,-75.38074 6.2151))"
 ]
}

 The dataset includes 164549 records from 167 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014374-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.