cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/e192687v1
title: Working Memory effects on Feedback Noticing

description: This study examined the role of working memory (WM) in the effectiveness of recasts and four types of prompts on the noticing of the English resumptive pronoun errors in spoken language. A hundred and twenty-four pre-intermediate EFL students were randomly assigned to five experimental groups (i.e. recast, clarification request, repetition, elicitation, and metalinguistic feedback), and a control group, and carried out a first-language WM operation span task. Noticing was assessed by learners’ modified output in response to feedback (measured by proportional scores). Participants engaged in two interactive tasks in dyads with the researcher, and were required to answer questions designed to elicit the target structure. Results indicated that prompts induced more noticing than recasts. WM was also found to mediate the effectiveness of feedback on noticing of the target form. Regression results revealed that WM was a strong predictor of prompts, particularly metalinguistic feedback and repetition. Findings of this study provide pedagogical implications on the effectiveness of feedback in L2 classes and how it is mediated by learners’ WM.
description: Proportional scores were used to measure the amount of noticing induced in response to corrective feedback. It was measured by dividing the total number of noticed errors in response to a particular type of feedback by the total number of opportunities for noticing and modification of the output. <br>
description: Response Rates: Of the 152 students who volunteered to take part in the study and signed an informed consent, 26 students were excluded from the study because they did not completely take all the tests, leaving us with 124 participants.
description: Presence of Common Scales: No scale was used.
description: Participants voluntarily decided to take part in the study. They were all pre-intermediate learners of English. The volunteered students were then randomly assigned to the 6 groups of the study.
description: Male and female pre-intermediate English as a Foreign Language students (N=124) at the Iran Language Institute (ILI) in Iran. Their ages ranged from 15 to 20 (M= 16.31). . Smallest Geographic Unit: N/A
description: face-to-face interview;
DOI: 10.48366/r601102
title: Challenges of online learning for deaf and hearing‑impaired students

description: Online education as an educational approach in crisis tine (pandemic or war), might be challenging, especially for people with special needs.
DOI: 10.15151/esrf-es-1265819592
title: ex situ samples from collaborators

description: Pt/Ni on carbon support, from different sysntesis routes, ex situ samples
DOI: 10.15151/esrf-es-1117957286
title: Macromolecular crystallography at the Philipps University Marburg (MarBAG)

description: Located at the Philipps-University-Marburg and the Max-Planck-Institute for terrestrial Microbiology in Marburg, Germany, the MarBAG employs X-ray crystallography to reveal fundamental mechanisms of key biological processes involving synthesis, assembly and function of macromolecular machines and cellular structures (e.g. CO2-fixation pathways, flagellar biosynthesis, CRISPR-Cas Systems, cell-wall-related processes, phage-bacteria relationships). Furthermore, we are interested in plant-pathogen interactions and the function of nucleotide derived signalling molecules in cellular stress physiology and organization. A 200 keV cryo-electron microscope was recently installed at the UMR to complement our efforts to structurally characterize macromolecular complexes, which do not readily crystallize. Thus, we can now routinely screen and quality check samples for cryo-electron microscopy and produce structures of 3Å resolution.
DOI: 10.15151/esrf-es-1118681770
title: SAARLAND BAG: ATOMIC MECHANISMS OF ACTION OF MEMBRANE PROTEINS AND BIOSYNTHETIC ENZYMES

description: Projects are focussed primarily within the framework of the DFG-funded excellence network program in Homburg (Saar) on "Ca2+signals: Molecular Mechanisms und Integrative Functions" at Saarland University and a new joint multidisciplinary initiative of the University with the Helmholtz Institute of Pharmaceutical Research Saarland in Saarbrücken on natural bioactive compounds including their interactions with their target proteins. These projects involve the structure determination of membrane proteins and soluble proteins.
DOI: 10.15151/esrf-es-1120141816
title: BAG Montpellier

description: The BAG of Montpellier gathers researchers from distinct institutes (CBS, IGF, IRIM and LPHI) affiliated to the INSERM, the CNRS and the university of Montpellier. The CBS is a node of the national infrastructure FRISBI. In this context, it is developping new methodologies for efficient ligand screening by X-ray diffraction. It is also involved in solving the structure of novel therapeutic targets to develop novel drug candidates. The IGF is involved in characterizing membrane proteins (mainly GPCRs) in order to better understand their functioning for therapeutic application. The IRIM and LPHI are focusing on several therapeutic targets related to infectious diseases in order to identify and develop novel inhibitors. CBS and IGF use SAXS to unravel the organization and behavior of various macromolecular systems in solution. Finally, we also use cryo-electron microscopy to study some macromolecular assemblies.
DOI: 10.15151/esrf-es-1168800372
title: IBS BAG

description: The IBS BAG includes in this proposal IBS teams and external groups from CEA-Cadarache (St Paul lez Durance) and IRBA (Brétigny-sur-Orge). We study structure-function relationships of proteins emphasizing in human health, biotechnology and methodology. Most of the projects are a continuation of the MX-2398 proposal and can be grouped into different topics as follows: host-pathogen interaction, new drug targets, fundamental cellular mechanisms, membrane proteins, biotechnological applications and methodology. Some of these projects use integrative approaches (X-ray crystallography, SAXS, NMR (and cryo-EM), together with other biophysical studies) with the aim to fully understand the complexity of the biological macromolecular systems on study.
DOI: 10.34740/kaggle/dsv/6121403
title: Contrastive Language Image Pretraining by openai
DOI: 10.15151/esrf-es-1275399691
title: Fast imaging of elastic samples using speckle based imaging

description: Speckle based imaging can be used to map local deformations of elastic samples locally. We aim to perform this technics on a serie of agarose gels to investigate the techique.
DOI: 10.15151/esrf-es-1218273508
title: In-situ XANES and PXRD to understand the kinetics of gold reduction inside MOFs

description: recycling methods have become essential as a circular economy displaces linear economic pathways. However, the current technology suffer from low gold kinetics and capacities and industry searches for new kinds of adsorbents. To embrace this new challenge, metal organics frameworks (MOFs) have the potential to become great adsorbents for extracting gold from e-waste leachate, due to their porous nature and high surface areas. In an attempt to design a MOF for gold recovery from aqueous solution, a post-synthetic modification strategy was proposed to allow the introduction of different amine adsorption sites. The host material was chosen to be MIL-101(Cr)-NH2 due to the relatively high chemical stability of the MOF, high surface area and large pore windows which allow the diffusion of the amines but also gold to the bulk.
DOI: 10.6084/m9.figshare.23666349
title: Model data for Guan et al., 2023 "Zonal structure of tropical Pacific surface salinity anomalies affects the eastern Pacific El Niño and central Pacific El Niño"

description: This is the model data for the manuscript submitted to a AGU jounal by Guan et al.; If you have any question, please contact us. (tianfeng777@hotmail.com)
DOI: 10.6084/m9.figshare.23548157
title: Hyperfine and P, T odd properties in BiO: comparison between coupled-cluster method and multi-reference perturbation method based on a Dirac Hamiltonian

description: Polar diatomic molecules are attractive in the search for the electron electric dipole moment (eEDM) and the scalar-pseudoscalar (S-PS) interaction, both of which violate time-reversal and parity symmetries. In this study, we examined the electronic ground state of BiO and evaluated the effective electric field (<i>E</i><sub>eff</sub>) of eEDM and the <i>W</i><sub>s</sub> coefficients of the S-PS interaction. BiO forms a complex chemical bond due to the open-shell configurations of Bi (6<i>p</i>) and O (2<i>p</i>). Consequently, we performed four-component relativistic calculations using complete-active-space second-order perturbation theory (CASPT2), as well as coupled-cluster singles and doubles (CCSD) and CCSD perturbative triples (CCSD(T)) methods. Our analysis revealed that BiO exhibited a multiconfigurational character, as the Hartree-Fock configuration accounted for only 68% of the reference wave function for CASPT2. Nevertheless, for the hyperfine coupling constant (A<sub>//</sub>), CCSD and CCSD(T) reproduced the experimental value better than CASPT2, indicating that CC methods can capture important excited configurations, rendering multireference treatment unnecessary. The deficiency of CASPT2 in reproducing A<sub>//</sub> could be attributed to the inadequate treatment of orbital relaxation effects. Our proposed values of <i>E</i><sub>eff</sub> and <i>W</i><sub>s</sub> for BiO (17 GV/cm and −36 kHz, respectively), derived at the CCSD level, were moderately large for the parity, time-odd experiment.
DOI: 10.6084/m9.figshare.23548157.v2
title: Hyperfine and P, T odd properties in BiO: comparison between coupled-cluster method and multi-reference perturbation method based on a Dirac Hamiltonian

description: Polar diatomic molecules are attractive in the search for the electron electric dipole moment (eEDM) and the scalar-pseudoscalar (S-PS) interaction, both of which violate time-reversal and parity symmetries. In this study, we examined the electronic ground state of BiO and evaluated the effective electric field (<i>E</i><sub>eff</sub>) of eEDM and the <i>W</i><sub>s</sub> coefficients of the S-PS interaction. BiO forms a complex chemical bond due to the open-shell configurations of Bi (6<i>p</i>) and O (2<i>p</i>). Consequently, we performed four-component relativistic calculations using complete-active-space second-order perturbation theory (CASPT2), as well as coupled-cluster singles and doubles (CCSD) and CCSD perturbative triples (CCSD(T)) methods. Our analysis revealed that BiO exhibited a multiconfigurational character, as the Hartree-Fock configuration accounted for only 68% of the reference wave function for CASPT2. Nevertheless, for the hyperfine coupling constant (A<sub>//</sub>), CCSD and CCSD(T) reproduced the experimental value better than CASPT2, indicating that CC methods can capture important excited configurations, rendering multireference treatment unnecessary. The deficiency of CASPT2 in reproducing A<sub>//</sub> could be attributed to the inadequate treatment of orbital relaxation effects. Our proposed values of <i>E</i><sub>eff</sub> and <i>W</i><sub>s</sub> for BiO (17 GV/cm and −36 kHz, respectively), derived at the CCSD level, were moderately large for the parity, time-odd experiment.
DOI: 10.6084/m9.figshare.23548157.v1
title: Hyperfine and P, T odd properties in BiO: comparison between coupled-cluster method and multi-reference perturbation method based on a Dirac Hamiltonian

description: Polar diatomic molecules are attractive in the search for the electron electric dipole moment (eEDM) and the scalar-pseudoscalar (S-PS) interaction, both of which violate time-reversal and parity symmetries. In this study, we examined the electronic ground state of BiO and evaluated the effective electric field (<i>E</i><sub>eff</sub>) of eEDM and the <i>W</i><sub>s</sub> coefficients of the S-PS interaction. BiO forms a complex chemical bond due to the open-shell configurations of Bi (6<i>p</i>) and O (2<i>p</i>). Consequently, we performed four-component relativistic calculations using complete-active-space second-order perturbation theory (CASPT2), as well as coupled-cluster singles and doubles (CCSD) and CCSD perturbative triples (CCSD(T)) methods. Our analysis revealed that BiO exhibited a multiconfigurational character, as the Hartree-Fock configuration accounted for only 68% of the reference wave function for CASPT2. Nevertheless, for the hyperfine coupling constant (A<sub>//</sub>), CCSD and CCSD(T) reproduced the experimental value better than CASPT2, indicating that CC methods can capture important excited configurations, rendering multireference treatment unnecessary. The deficiency of CASPT2 in reproducing A<sub>//</sub> could be attributed to the inadequate treatment of orbital relaxation effects. Our proposed values of <i>E</i><sub>eff</sub> and <i>W</i><sub>s</sub> for BiO (17 GV/cm and −36 kHz, respectively), derived at the CCSD level, were moderately large for the parity, time-odd experiment.
DOI: 10.25345/c5h98zq09
title: MassIVE MSV000092406 - Mapping the MOB proteins proximity network reveals a unique interaction between MOB3C and the RNase P complex
title: Distinct functions mediated by members of the MOB family of proteins remain elusive beyond the evolutionary conserved and well-established roles of MOB1A and B in regulating the Hippo pathway. Since MOB proteins are adaptors, understanding how they engage in protein-protein interactions and complexes assembly is essential to define their biological functions. To address this, we undertook a BioID approach to systematically define the proximity network of the seven mammalian MOB proteins in two different cell lines and we uncovered &gt; 200 interactions, of which at least 70% are unreported on BioGrid. The generated dataset recalled the bona fide interactors of the well-studied MOBs. We further defined the common and differential interactome between different MOBs on a subfamily and an individual level. We defined a unique interaction between MOB3C and 7 out of 10 protein subunits of the RNase P complex, an endonuclease that catalyzes tRNA 5' maturation. As a proof-of-principle for the robustness of the generated dataset, we validated that MOB3C specifically interacts with catalytically active RNase P via affinity purification-mass spectrometry, and pulldowns coupled with pre-tRNA cleavage assay. In summary, our dataset provides novel insights into the biology of MOB proteins and reveals the first interactors of MOB3C, that unexpectedly do not hone in on kinase signaling as for classical MOB1 but rather on an RNA biology territory.
DOI: 10.25345/c5cj87w7d
title: MassIVE MSV000092407 - ProteasomeID: quantitative mapping of proteasome interactomes and substrates for in vitro and in vivo studies
title: Proteasomes are essential molecular machines responsible for the degradation of proteins in eukaryotic cells. Altered proteasome activity has been linked to neurodegeneration, auto-immune disorders and cancer. Despite the relevance for human disease and drug development, no method currently exists to monitor proteasome composition and interactions in vivo in animal models. To fill this gap, we developed a strategy based on tagging of proteasomes with promiscuous biotin ligases and generated a new mouse model enabling the quantification of proteasome interactions by mass spectrometry. We show that biotin ligases can be incorporated in fully assembled proteasomes without negative impact on their activity. We demonstrate the utility of our method by identifying novel proteasome-interacting proteins, charting interactomes across mouse organs, and showing that proximity-labeling enables the identification of both endogenous and small molecule-induced proteasome substrates.
DOI: 10.6084/m9.figshare.19790734
title: Data files and R codes from: Ecological predictors of interspecific variation in bird bill and leg lengths on a global scale

description: This repository contains data files and R codes for Xu et al. Ecological predictors of interspecific variation in bird bill and leg lengths on a global scale. It has two folders. One is dedicated to visualize phylogenetic distribution of relative bill length and tarsus length. The other is for performing phylogenetic linear regressions and phylogenetic path analyses. The latter contains two subfolders, one corresponding to the classification of migration by BirdLife International, and the other based on the classification of migration by Tobias et al. 2022.
DOI: 10.6084/m9.figshare.23291972.v2
title: Urbanity Colab Data Files

description: Sample subzone files for Urbanity colab demo. Data obtained from GADM database.
DOI: 10.6084/m9.figshare.23666568
title: Supplementary Material for: Comparison of different internal limiting membrane peeling sizes for idiopathic macular holes: a systematic review and meta-analysis

description: Background: Although internal limiting membrane (ILM) peeling facilitates macular hole (MH) closure and reduces late hole reopening, it brings some detrimental consequences to the retinal microstructure and functional outcomes. So far, previous studies have not reached a consensus on the optimal ILM peeling size. Objectives: To evaluate the outcomes of different ILM peeling sizes for idiopathic MHs. Methods: PubMed, EMBASE, Cochrane Library, Web of Science, CNKI and WANFANG were searched until April 10th, 2022. Studies in English or Chinese that comparing effects of two ILM peeling sizes (&gt; 2 disk diameters [DD] vs ≤ 2DD) for idiopathic MHs were included. The overall closure rate, postoperative best-corrected visual acuity (BCVA), type 1 closure, and adverse events were extracted. BCVA was converted to logarithm of the minimum angle of resolution (LogMAR). Results: Seven eligible studies (560 eyes) including 3 randomized clinical trials, 3 prospective trials and one retrospective cohort were included. Pooled results showed a significantly better postoperative BCVA (mean difference = -0.16; 95% confidence interval [CI]: -0.27 to -0.04; LogMAR) and higher type 1 closure rate (risk ratio = 1.24; 95% CI: 1.08 to 1.43) in eyes with ILM peeling &gt; 2DD than those with peeling ≤ 2DD. No significant difference was found in overall closure rate and adverse events between the two groups. Subgroup analysis indicated that in MHs &gt; 400μm, peeling &gt; 2DD helped obtain a better postoperative BCVA (mean difference = -0.17; 95% CI: -0.29 to -0.04; LogMAR) and higher frequency of type 1 closure (risk ratio = 1.25; 95% CI: 1.03 to 1.51). Conclusions: Peeling &gt; 2DD shares similar safety level with peeling ≤ 2DD and has a superiority of facilitating visual recovery. Larger ILM peeling may be more beneficial for large MHs.
DOI: 10.5281/zenodo.8137763
title: IPOS-Dem Data Backup

description: This is the data back-up for the IPOS-Dem Project
DOI: 10.5281/zenodo.8137762
title: IPOS-Dem Data Backup

description: This is the data back-up for the IPOS-Dem Project
DOI: 10.57745/lwxsah
title: PrunusPersica_Bordeaux_INRAE_TEMPO.xlsx

description: Données phénologiques observées à INRAE Grande Ferrade
DOI: 10.57745/v0ubfh
title: Fichier_PrunusPersica_Bordeaux_INFOS.tab

description: INFOS du document "Fichier_PrunusPersica_Bordeaux_INRAE_TEMPO"; INFOS of the document "Fichier_PrunusPersica_Bordeaux_INRAE_TEMPO"
DOI: 10.57745/uiuslw
title: Fichier_PrunusPersica_Bordeaux_Stades_BBCH.tab

description: Descriptif des stades BBCH pour le document "Fichier_PrunusPersica_Bordeaux_INRAE_TEMPO"; Description of the BBCH stages for the document "Fichier_PrunusPersica_Bordeaux_INRAE_TEMPO"
DOI: 10.57745/qefs9y
title: Fichier_PrunusPersica_Bordeaux_Données.tab

description: Données phénologiques du document "Fichier_PrunusPersica_Bordeaux_INRAE_TEMPO"; Phenological data of the document "Fichier_PrunusPersica_Bordeaux_INRAE_TEMPO"
DOI: 10.57745/wecn5j
title: Fichier_PrunusPersica_Bordeaux_Licences.tab

description: Licences pour le fichier "Fichier_PrunusPersica_Bordeaux_INRAE_TEMPO"; License for the file "Fichier_PrunusPersica_Bordeaux_INRAE_TEMPO"
DOI: 10.57745/w3k7no
title: Lisezmoi_PrunusPersica_Bordeaux_INRAE_TEMPO_FR_.txt

description: Fichier "Lisez moi"
DOI: 10.57745/wqeyib
title: Readme_PrunusPersica_Bordeaux_INRAE_TEMPO_EN.txt

description: "Read me" file
DOI: 10.57745/rrgq6j
title: JunglansRegia_Bordeaux_INRAE_TEMPO.xlsx

description: Données phénologiques observées à INRAE Ile d'Arcins
DOI: 10.57745/dxpjcg
title: Lisezmoi_JunglansRegia_Bordeaux_INRAE_TEMPO_FR_.txt

description: Fichier "Lisez moi"
DOI: 10.57745/9mr3qn
title: Fichier_JunglansRegia_Bordeaux_Licences.tab

description: Licences pour le document "Fichier_JunglansRegia_Bordeaux_INRAE_TEMPO" Licenses for the document "Fichier_JunglansRegia_Bordeaux_INRAE_TEMPO"
DOI: 10.57745/jj4nrw
title: Fichier_JunglansRegia_Bordeaux_Stade_BBCH.tab

description: Descriptif des stades BBCH pour le document "Fichier_JunglansRegia_Bordeaux_INRAE_TEMPO" Description of the BBCH stages for the document "Fichier_JunglansRegia_Bordeaux_INRAE_TEMPO"
DOI: 10.57745/8xx1pq
title: Readme_JunglansRegia_Bordeaux_INRAE_TEMPO_EN.txt

description: "Read me" file
DOI: 10.57745/gphmlu
title: Fichier_JunglansRegia_Bordeaux_INFOS.tab

description: INFOS du document "Fichier_JunglansRegia_Bordeaux_INRAE_TEMPO" INFOS of the document "Fichier_JunglansRegia_Bordeaux_INRAE_TEMPO"
DOI: 10.57745/vzefiq
title: Fichier_JunglansRegia_Bordeaux_Données.tab

description: Données du document "Fichier_JunglansRegia_Bordeaux_INRAE_TEMPO" Data of the file "Fichier_JunglansRegia_Bordeaux_INRAE_TEMPO"
DOI: 10.11583/dtu.16902979
title: Deep De-Homogenization: synthetic orientation fields

description: Data - in zipped form - related to the synthetic orientation fields used in: <br><br>Elingaard, M. O., Aage, N., Bærentzen, J. A., & Sigmund, O. (2022). De-homogenization using convolutional neural networks. <i>Computer Methods in Applied Mechanics and Engineering</i>, <i>388</i>, 114197. https://doi.org/10.1016/j.cma.2021.114197<br>The dataset is split into a training and test set. The training set contains 10.000 orientation fields, while the test set contains 1000 orientation fields. Each orientation field is saved as .npy file, and can be loaded in python using the numpy.load function (https://numpy.org/doc/stable/reference/generated/numpy.load.html).
DOI: 10.11583/dtu.16902979.v1
title: Deep De-Homogenization: synthetic orientation fields

description: Data - in zipped form - related to the synthetic orientation fields used in: <br><br>Elingaard, M. O., Aage, N., Bærentzen, J. A., & Sigmund, O. (2022). De-homogenization using convolutional neural networks. <i>Computer Methods in Applied Mechanics and Engineering</i>, <i>388</i>, 114197. https://doi.org/10.1016/j.cma.2021.114197<br>The dataset is split into a training and test set. The training set contains 10.000 orientation fields, while the test set contains 1000 orientation fields. Each orientation field is saved as .npy file, and can be loaded in python using the numpy.load function (https://numpy.org/doc/stable/reference/generated/numpy.load.html).
DOI: 10.11583/dtu.14564643
title: Data for "Improved dynamic imaging of multiphase flow by constrained tomographic reconstruction” - ground_truth_distribution_time

description: Histogram of the ground truth as a function of time. This is needed for comparison when evaluating the performance of the algorithms described in the article 'Improved dynamic imaging of multiphase flow by constrained tomographic reconstruction'.The code can be found at https://gitlab.gbar.dtu.dk/pwra/NumericalExperiments<br><br>This item is a part of the collection: Data for "Improved dynamic imaging of multiphase flow by constrained tomographic reconstruction”, https://doi.org/10.11583/DTU.c.5448594<br>