cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.14469/hpc/6772
title: 1,3-di-tert-butyl-1,3,2λ2-diazasilolidine, C2, singlet, G = -793.297197, compound 2a

description: Gaussian Calculation
DOI: 10.5281/zenodo.3653919
title: A Dataset for GitHub Repository Deduplication

description: GitHub projects can be easily replicated through the site's fork process or through a Git clone-push sequence. This is a problem for empirical software engineering, because it can lead to skewed results or mistrained machine learning models. We provide a dataset of 10.6 million GitHub projects that are copies of others, and link each record with the project's ultimate parent. The ultimate parents were derived from a ranking along six metrics. The related projects were calculated as the connected components of an 18.2 million node and 12 million edge denoised graph created by directing edges to ultimate parents. The graph was created by filtering out more than 30 hand-picked and 2.3 million pattern-matched clumping projects. Projects that introduced unwanted clumping were identified by repeatedly visualizing shortest path distances between unrelated important projects. Our dataset identified 30 thousand duplicate projects in an existing popular reference dataset of 1.8 million projects. An evaluation of our dataset against another created independently with different methods found a significant overlap, but also differences attributed to the operational definition of what projects are considered as related. The dataset is provided as two files identifying GitHub repositories using the <em>login-name/project-name</em> convention. The file <em>deduplicate_names</em> contains 10,649,348 tab-separated records mapping a duplicated <em>source project</em> to a definitive <em>target project</em>. The file <em>forks_clones_noise_names</em> is a 50,324,363 member superset of the source projects, containing also projects that were excluded from the mapping as noise.
DOI: 10.5281/zenodo.3653920
title: A Dataset for GitHub Repository Deduplication

description: GitHub projects can be easily replicated through the site's fork process or through a Git clone-push sequence. This is a problem for empirical software engineering, because it can lead to skewed results or mistrained machine learning models. We provide a dataset of 10.6 million GitHub projects that are copies of others, and link each record with the project's ultimate parent. The ultimate parents were derived from a ranking along six metrics. The related projects were calculated as the connected components of an 18.2 million node and 12 million edge denoised graph created by directing edges to ultimate parents. The graph was created by filtering out more than 30 hand-picked and 2.3 million pattern-matched clumping projects. Projects that introduced unwanted clumping were identified by repeatedly visualizing shortest path distances between unrelated important projects. Our dataset identified 30 thousand duplicate projects in an existing popular reference dataset of 1.8 million projects. An evaluation of our dataset against another created independently with different methods found a significant overlap, but also differences attributed to the operational definition of what projects are considered as related. The dataset is provided as two files identifying GitHub repositories using the <em>login-name/project-name</em> convention. The file <em>deduplicate_names</em> contains 10,649,348 tab-separated records mapping a duplicated <em>source project</em> to a definitive <em>target project</em>. The file <em>forks_clones_noise_names</em> is a 50,324,363 member superset of the source projects, containing also projects that were excluded from the mapping as noise.
DOI: 10.7910/dvn/lfd20f/k8vogv
title: Borzyskowski Wahman Data combined.tab

description: Dataset
DOI: 10.17632/5r2xdfvd58.1
title: Data for: A Scalable Contention Manager for Software Transactions on the GPU

description: Data used to generate the graphs and figures in the paper
DOI: 10.5281/zenodo.3634560
title: SCRINSHOT, a spatial method for single-cell resolution mapping of cell states in tissue sections

description: The submitted dataset, correspond to the RAW (*.czi format) and analysis files of the manuscript "SCRINSHOT, a spatial method for single-cell resolution mapping of cell states in tissue sections", which has been processed for revision (2020-01-31) by PLOS Biology. The files are in *.zip format and the naming follows thenumbering of the manuscript figures, which will be found in bioRxiv.org (<strong>ID#: BIORXIV/2020/938571</strong>). Each *.zip files contains a document with the description of all the provided files.
DOI: 10.5281/zenodo.3634561
title: SCRINSHOT, a spatial method for single-cell resolution mapping of cell states in tissue sections

description: The submitted dataset, correspond to the RAW (*.czi format) and analysis files of the manuscript "SCRINSHOT, a spatial method for single-cell resolution mapping of cell states in tissue sections", which has been processed for revision (2020-01-31) by PLOS Biology. The files are in *.zip format and the naming follows thenumbering of the manuscript figures, which will be found in bioRxiv.org (<strong>ID#: BIORXIV/2020/938571</strong>). Each *.zip files contains a document with the description of all the provided files.
DOI: 10.21227/sb2k-v890
title: Gain Scheduling Control of Gas Turbine Engines: Absolute Stability by Finding a Common Lyapunov Matrix

description: This manuscript aims to develop and describe gain scheduling control concept for a gas turbine engine which drives a variable pitch propeller. An architecture for gain-scheduling control is developed that controls the turboshaft engine for large thrust commands in stable fashion with good performance. Fuel ﬂow and propeller pitch angle are the two control inputs of the system. New stability proof has been developed for gain scheduling control of gas turbine engines using global linearization and LMI techniques. This approach guarantees absolute stability of the closed loop gas turbine engines with gain-scheduling controllers.
DOI: 10.5066/p9qga3mw
title: Long-Term Site Potential Rangeland Fractional Component Cover and Deviation in Wyoming, USA

description: Monitoring rangelands by identifying the departure of contemporary conditions from long-term ecological potential allows for the disentanglement of natural biophysical gradients driving change from changes due to land uses and other disturbance types. We developed maps of ecological potential (EP) for shrub, sagebrush (Artemisia spp.), perennial herbaceous, litter, and bare ground fractional cover in Wyoming, USA. EP maps correspond to the potential natural vegetation cover expected by environmental conditions in the absence of anthropogenic and natural disturbance as represented by the best growing conditions and least disturbed period of the Landsat archive. EP was predicted using regression tree models with inputs of soil maps and spectral data associated with the 75th percentile of Normalized Difference Vegetation Index (NDVI) in the Landsat archive. We used contemporary (~2015) component cover maps on ecologically-intact sites with relatively low bare ground than expectations and with low amounts of annual herbaceous cover as training. We generated departure of vegetation cover by comparing the EP and contemporary (~2015) fractional cover. The departures represent land cover change from potential land cover and/or within state changes in 2015. Next, we converted EP and contemporary fractional cover maps into thematic land cover and evaluated departure to determine if it was great enough to result in land cover change. The contemporary conditions showed reduced shrub, sagebrush, litter, and perennial herbaceous cover and increased bare ground relative to EP. Known disturbances, such as energy development, fires, and vegetation treatments, are clearly visible on the departure maps, but not EP component maps. The most frequent departure from EP land cover was shrubland conversion to grassland. Land cover departures can be explained only in small part by known disturbance, such fire, and instead are ostensibly related to climate and land management practices. These drivers result in land cover departures that broadened the ecotone between shrubland and grassland relative to EP. Five EP layers are presented here; bare ground, perennial herbaceous, sagebrush, and shrub cover. Also available are two "crosswalked" (CW) land cover layers; 2015CW and EPCW. For more information see https://www.mrlc.gov/.
DOI: 10.5284/1059011
title: Arcot, Phase 1, Cramlington, Northumberland. Post-excavation Analysis. (OASIS ID: archaeol3-368584).

description: This archive presents the results of analysis of an archaeological excavation conducted for a development at land off Fisher Lane (A1068), Cramlington, Northumberland. A suite of radiocarbon dates and subsequent palaeo-environmental analysis was conducted to supplement earlier data. The works were commissioned by Persimmon Homes and Bellway, and conducted by Archaeological Services Durham University. A flint flake and a Bronze Age radiocarbon date from residual material indicates that there may have been pre-Iron Age activity on the site. More definitive evidence for settlement on the site comprised two adjacent and contemporary pits, one probably an open hearth and the other a covered earth oven. Both were radiocarbon dated to the earlier Iron Age, and had been used for cooking hazelnuts and meat. A rectilinear settlement enclosed by a palisade was built on the site. Within the enclosure was a central roundhouse and two smaller roundhouses. The houses comprise surviving elements of internal wall construction slots and eaves-drip gullies. There are no indications that the enclosure or houses were rebuilt. Radiocarbon dating indicated that the settlement was occupied in the later 4th and the 3rd centuries BC, when it was abandoned. It was not subsequently reoccupied. The enclosure and houses had entrances facing to the south-west. A contemporary ditch c.100m to the north-east of the roundhouse may be an associated field boundary and indicate management of the wider landscape. There was some limited evidence for the use of cultivated cereals, including wheat, within the settlement, which may reflect this, as well as for exploitation of a local lowland oak woodland. Small-scale ironworking also took place on the site. The area was used for agriculture from the medieval period onwards, with post medieval evidence for a track associated with a 19th century planation identified, as well as a possible mine shaft.
DOI: 10.5281/zenodo.3647902
title: Plate model for 'A continuous, kinematic full-plate motion model from 1 Ga to present'

description: Plate model for the last 1 Ga accompanying Merdith et al. (in review).
DOI: 10.21227/ceqc-vf71
title: Sensor Fault Detection, Isolation and Identiﬁcation Using Multiple Model-based Hybrid Kalman Filter for Gas Turbine Engines*

description: In this paper, a novel sensor fault detection, isolation and identiﬁcation (FDII) strategy is proposed by using the multiple model (MM) approach. The scheme is based on multiple hybrid Kalman ﬁlters (HKF) which represents an integration of a nonlinear mathematical model of the system with a number of piecewise linear (PWL) models. The proposed fault detection and isolation (FDI) scheme is capable of detecting and isolating sensor faults during the entire operational regime of the system by interpolating the PWL models using a Bayesian approach. Moreover, the proposed multiple HKF-based FDI scheme is extended to identify the magnitude of a sensor fault by using a modiﬁed generalized likelihood ratio (GLR) method which relies on the healthy operational mode of the system. To illustrate the capabilities of our proposed FDII methodology, extensive simulation studies are conducted for a nonlinear gas turbine engine. Various single and concurrent sensor fault scenarios are considered to demonstrate the effectiveness of our proposed on-line hierarchical multiple HKF-based FDII scheme under different ﬂight modes. Finally, our proposed HKF-based FDI approach is compared with various ﬁltering methods such as the linear, extended, unscented and cubature Kalman ﬁlters (LKF, EKF, UKF and CKF, respectively) corresponding to both interacting and non-interacting multiple model (MM) based schemes. Our comparative studies conﬁrm the superiority of our proposed HKF method in terms of promptness of the fault detection, lower false alarm rates, as well as robustness with respect to the engine health parameters degradations.
DOI: 10.21227/qycs-9n23
title: Sensor Fault Detection, Isolation and Identiﬁcation Using Multiple Model-based Hybrid Kalman Filter for Gas Turbine Engines*

description: In this paper, a novel sensor fault detection, isolation and identiﬁcation (FDII) strategy is proposed by using the multiple model (MM) approach. The scheme is based on multiple hybrid Kalman ﬁlters (HKF) which represents an integration of a nonlinear mathematical model of the system with a number of piecewise linear (PWL) models. The proposed fault detection and isolation (FDI) scheme is capable of detecting and isolating sensor faults during the entire operational regime of the system by interpolating the PWL models using a Bayesian approach. Moreover, the proposed multiple HKF-based FDI scheme is extended to identify the magnitude of a sensor fault by using a modiﬁed generalized likelihood ratio (GLR) method which relies on the healthy operational mode of the system. To illustrate the capabilities of our proposed FDII methodology, extensive simulation studies are conducted for a nonlinear gas turbine engine. Various single and concurrent sensor fault scenarios are considered to demonstrate the effectiveness of our proposed on-line hierarchical multiple HKF-based FDII scheme under different ﬂight modes. Finally, our proposed HKF-based FDI approach is compared with various ﬁltering methods such as the linear, extended, unscented and cubature Kalman ﬁlters (LKF, EKF, UKF and CKF, respectively) corresponding to both interacting and non-interacting multiple model (MM) based schemes. Our comparative studies conﬁrm the superiority of our proposed HKF method in terms of promptness of the fault detection, lower false alarm rates, as well as robustness with respect to the engine health parameters degradations.
DOI: 10.21227/3s1t-n573
title: Sensor Fault Detection, Isolation and Identiﬁcation Using Multiple Model-based Hybrid Kalman Filter for Gas Turbine Engines*

description: In this paper, a novel sensor fault detection, isolation and identiﬁcation (FDII) strategy is proposed by using the multiple model (MM) approach. The scheme is based on multiple hybrid Kalman ﬁlters (HKF) which represents an integration of a nonlinear mathematical model of the system with a number of piecewise linear (PWL) models. The proposed fault detection and isolation (FDI) scheme is capable of detecting and isolating sensor faults during the entire operational regime of the system by interpolating the PWL models using a Bayesian approach. Moreover, the proposed multiple HKF-based FDI scheme is extended to identify the magnitude of a sensor fault by using a modiﬁed generalized likelihood ratio (GLR) method which relies on the healthy operational mode of the system. To illustrate the capabilities of our proposed FDII methodology, extensive simulation studies are conducted for a nonlinear gas turbine engine. Various single and concurrent sensor fault scenarios are considered to demonstrate the effectiveness of our proposed on-line hierarchical multiple HKF-based FDII scheme under different ﬂight modes. Finally, our proposed HKF-based FDI approach is compared with various ﬁltering methods such as the linear, extended, unscented and cubature Kalman ﬁlters (LKF, EKF, UKF and CKF, respectively) corresponding to both interacting and non-interacting multiple model (MM) based schemes. Our comparative studies conﬁrm the superiority of our proposed HKF method in terms of promptness of the fault detection, lower false alarm rates, as well as robustness with respect to the engine health parameters degradations.
DOI: 10.5281/zenodo.3656968
title: Remote detection and recording of atomic-scale spin dynamics

description: This folder contains all data and all processing files for the paper titled "Remote detection and recording of atomic-scale spin dynamics". View full paper here: https://www.nature.com/articles/s42005-020-0361-z
description: Accepted
DOI: 10.5281/zenodo.3656969
title: Remote detection and recording of atomic-scale spin dynamics

description: This folder contains all data and all processing files for the paper titled "Remote detection and recording of atomic-scale spin dynamics".
description: Paper accepted by editor, waiting for review.
DOI: 10.5281/zenodo.3658438
title: Purification of the HTT N-HEAT (81-1643) with various buffer conditions

description: Previously, I purified the HTT N-HEAT_81-1643 domain and showed that the HTT N-HEAT_81-1643 domain elutes early from a Superose 6 column 10/300 (https://zenodo.org/record/3462496#.XjsVXSNOk2w). Initial biophysical characterization by DLS showed samples of the HTT N-HEAT_81-1643 construct are made up of large particles ( https://zenodo.org/record/3562523#.Xjw57iN, https://zenodo.org/record/3561096#.Xjw6ByNOk2w). Thus, our initial results all pointed out at having high oligomeric states of the HTT N-HEAT_81-1643 construct in solution. To rule out the possibility of a weak interaction with nucleic acid material which could cause the large particle size in solution, we tested whether we could remove the nucleic acid material by adding an additional purification step with heparin resin. However, purification using the additional heparin step showed no improvement in the purity of the sample from other protein impurities or nucleic acid material (https://zenodo.org/record/3562523#.XjsVyyNOk2w). Determination of ideal buffer conditions for the HTT N-HEAT_81-1643 construct using DSLS and DSF (https://zenodo.org/record/3562523#.Xjw57iN https://zenodo.org/record/3519364#.Xjw6ICNOk2w, https://zenodo.org/record/3561087#.Xjw6LiNOk2w) was not possible as no significant changes in the T<sub>aag</sub> or T<sub>m</sub> were observed for the conditions tested. Further, the data for both DSF and DSLS could have presented challenges to fit (<em>e.g.</em> The DSF data showed very high initial fluorescence while the DSLS data showed the T<sub>agg </sub>­ for this construct was at the end of the detection limit ~ 90 °C). Thus, to further assess if we could find an ideal buffer condition where the HTT N-HEAT_81-1643 construct is the most stable and monomeric, we tested different purification conditions.
description: Dr. Harding is the recipient of the Huntington's Disease Society of America Berman Topper Career Development Fellowship which funds and supports this research, in addition to generous funding from the CHDI Foundation and the Huntington Society of Canada. The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada through Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Ontario Ministry of Research, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome.
DOI: 10.5281/zenodo.3658439
title: Purification of the HTT N-HEAT (81-1643) with various buffer conditions

description: Previously, I purified the HTT N-HEAT_81-1643 domain and showed that the HTT N-HEAT_81-1643 domain elutes early from a Superose 6 column 10/300 (https://zenodo.org/record/3462496#.XjsVXSNOk2w). Initial biophysical characterization by DLS showed samples of the HTT N-HEAT_81-1643 construct are made up of large particles ( https://zenodo.org/record/3562523#.Xjw57iN, https://zenodo.org/record/3561096#.Xjw6ByNOk2w). Thus, our initial results all pointed out at having high oligomeric states of the HTT N-HEAT_81-1643 construct in solution. To rule out the possibility of a weak interaction with nucleic acid material which could cause the large particle size in solution, we tested whether we could remove the nucleic acid material by adding an additional purification step with heparin resin. However, purification using the additional heparin step showed no improvement in the purity of the sample from other protein impurities or nucleic acid material (https://zenodo.org/record/3562523#.XjsVyyNOk2w). Determination of ideal buffer conditions for the HTT N-HEAT_81-1643 construct using DSLS and DSF (https://zenodo.org/record/3562523#.Xjw57iN https://zenodo.org/record/3519364#.Xjw6ICNOk2w, https://zenodo.org/record/3561087#.Xjw6LiNOk2w) was not possible as no significant changes in the T<sub>aag</sub> or T<sub>m</sub> were observed for the conditions tested. Further, the data for both DSF and DSLS could have presented challenges to fit (<em>e.g.</em> The DSF data showed very high initial fluorescence while the DSLS data showed the T<sub>agg </sub>­ for this construct was at the end of the detection limit ~ 90 °C). Thus, to further assess if we could find an ideal buffer condition where the HTT N-HEAT_81-1643 construct is the most stable and monomeric, we tested different purification conditions.
description: Dr. Harding is the recipient of the Huntington's Disease Society of America Berman Topper Career Development Fellowship which funds and supports this research, in addition to generous funding from the CHDI Foundation and the Huntington Society of Canada. The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada through Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Ontario Ministry of Research, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome.
DOI: 10.6084/m9.figshare.11808261.v1
title: Supplementary data for "Exhumation and Preservation of Paleozoic Porphyry Cu Deposits: Insights from the Yandong Deposit, southern Central Asian Orogenic Belt"

description: Tables and supplementary materials for research paper
DOI: 10.14272/tyasfkrzowimfl-uhfffaoysa-n.2
title: 2,3,4,6-tetra(carbazol-9-yl)-5-[5-(4-iodophenyl)-1,3,4-oxadiazol-2-yl]benzonitrile
title: InChI=1S/C63H36IN7O/c64-39-35-33-38(34-36-39)62-66-67-63(72-62)57-58(68-49-25-9-1-17-40(49)41-18-2-10-26-50(41)68)48(37-65)59(69-51-27-11-3-19-42(51)43-20-4-12-28-52(43)69)61(71-55-31-15-7-23-46(55)47-24-8-16-32-56(47)71)60(57)70-53-29-13-5-21-44(53)45-22-6-14-30-54(45)70/h1-36H

description: This dataset contains experimental data from a sample (2,3,4,6-tetra(carbazol-9-yl)-5-[5-(4-iodophenyl)-1,3,4-oxadiazol-2-yl]benzonitrile, InChI=1S/C63H36IN7O/c64-39-35-33-38(34-36-39)62-66-67-63(72-62)57-58(68-49-25-9-1-17-40(49)41-18-2-10-26-50(41)68)48(37-65)59(69-51-27-11-3-19-42(51)43-20-4-12-28-52(43)69)61(71-55-31-15-7-23-46(55)47-24-8-16-32-56(47)71)60(57)70-53-29-13-5-21-44(53)45-22-6-14-30-54(45)70/h1-36H). The datasets from the following experiments are available: 1H nuclear magnetic resonance spectroscopy (1H NMR) 13C nuclear magnetic resonance spectroscopy (13C NMR) mass spectrometry (MS) infrared absorption spectroscopy (IR)
DOI: 10.14272/tyasfkrzowimfl-uhfffaoysa-n/chmo0000470
title: mass spectrometry (MS) (2,3,4,6-tetra(carbazol-9-yl)-5-[5-(4-iodophenyl)-1,3,4-oxadiazol-2-yl]benzonitrile)
title: InChI=1S/C63H36IN7O/c64-39-35-33-38(34-36-39)62-66-67-63(72-62)57-58(68-49-25-9-1-17-40(49)41-18-2-10-26-50(41)68)48(37-65)59(69-51-27-11-3-19-42(51)43-20-4-12-28-52(43)69)61(71-55-31-15-7-23-46(55)47-24-8-16-32-56(47)71)60(57)70-53-29-13-5-21-44(53)45-22-6-14-30-54(45)70/h1-36H

description: dataset for mass spectrometry (MS) HRMS (APCI, C63H37IN7O2) calc. 1034.2099 [M+H]+, found 1034.2108 [M+H]+.