cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.grdk7d
title: Occurrence Download

description: A dataset containing 1060 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.23347638212738",
 "DecimalLongitude is less than 6.23653593531177",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1060 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043196-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.edbu64
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phasmoneura janirae",
 "DecimalLongitude is not null",
 "DecimalLatitude is not null"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043197-251025141854904/datasets/export for details.
DOI: 10.15468/dl.en7be2
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-108.1188 24.14913, -107.9688 24.14913, -107.9688 24.29913, -108.1188 24.29913, -108.1188 24.14913))"
 ]
}

 The dataset includes 19 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043195-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vv5563
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pentaschistis airoides airoides",
 "HasCoordinate is true"
 ]
}

 The dataset includes 112 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043198-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e240306
title: HIFLD OPEN HydroLocation - Sink, Spring, Waterbody Outlet

description: The USGS 3D Hydrography Program (3DHP) ArcGIS REST service (3DHP_all) from The National Map is the first of several data services that will be delivered by the 3D Hydrography Program. The 3DHP_all comprises a national network of flowlines, hydrolocations, and water bodies, and will include catchments, drainage areas, and flow network derivatives as they are populated in the future. The 3DHP_all service will provide access to a 3D-enabled geospatial hydrography vector dataset built from 3DHP data and intended to provide the most comprehensive but general rendering of 3DHP data. 3DHP data is derived from elevation-derived hydrography (EDH) Elevation-Derived Hydrography Specifications | U.S. Geological Survey (usgs.gov) where available. Where EDH has not been collected, 3DHP data will be supplemented by data from the National Hydrography Dataset (NHD) National Hydrography Dataset | U.S. Geological Survey (usgs.gov). As further EDH data is collected, the EDH data will replace the NHD data in that data collection area. 3DHP data ingested from EDH sources will include catchments, drainage areas derived from catchments, and flowline network attribute derivatives.For additional information on the 3DHP, go to https://www.usgs.gov/3dhp.See https://apps.nationalmap.gov/help/ for assistance with The National Map viewer, download client, services, or metadata.
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025.
DOI: 10.3886/e240306v1
title: HIFLD OPEN HydroLocation - Sink, Spring, Waterbody Outlet

description: The USGS 3D Hydrography Program (3DHP) ArcGIS REST service (3DHP_all) from The National Map is the first of several data services that will be delivered by the 3D Hydrography Program. The 3DHP_all comprises a national network of flowlines, hydrolocations, and water bodies, and will include catchments, drainage areas, and flow network derivatives as they are populated in the future. The 3DHP_all service will provide access to a 3D-enabled geospatial hydrography vector dataset built from 3DHP data and intended to provide the most comprehensive but general rendering of 3DHP data. 3DHP data is derived from elevation-derived hydrography (EDH) Elevation-Derived Hydrography Specifications | U.S. Geological Survey (usgs.gov) where available. Where EDH has not been collected, 3DHP data will be supplemented by data from the National Hydrography Dataset (NHD) National Hydrography Dataset | U.S. Geological Survey (usgs.gov). As further EDH data is collected, the EDH data will replace the NHD data in that data collection area. 3DHP data ingested from EDH sources will include catchments, drainage areas derived from catchments, and flowline network attribute derivatives.For additional information on the 3DHP, go to https://www.usgs.gov/3dhp.See https://apps.nationalmap.gov/help/ for assistance with The National Map viewer, download client, services, or metadata.
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025.
DOI: 10.15468/dl.32tt3f
title: Occurrence Download

description: A dataset containing 141607 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Chordata [GBIF Backbone Taxonomy])",
 "GadmGid is one of (COL.2.9_2)"
 ]
 }
 ]
}

 The dataset includes 141607 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043116-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qe2xuf
title: Occurrence Download

description: A dataset containing 27282095 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Zenaida macroura"
 ]
}

 The dataset includes 27282095 records from 187 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043143-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zyqbpk
title: Occurrence Download

description: A dataset containing 1480 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.23653593531177",
 "DecimalLongitude is less than 6.23959548849616",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1480 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043199-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jnwrpz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phoenicagrion flavescens",
 "DecimalLongitude is not null",
 "DecimalLatitude is not null"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043200-251025141854904/datasets/export for details.
DOI: 10.15468/dl.7t99wz
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-107.9688 24.14913, -107.8188 24.14913, -107.8188 24.29913, -107.9688 24.29913, -107.9688 24.14913))"
 ]
}

 The dataset includes 22 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043201-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ntsj4
title: Occurrence Download

description: A dataset containing 2294 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Penstemon angustifolius",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2294 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043202-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e240307
title: HIFLD OPEN Line - Large Scale

description: Please use 3DHP for updated data The USGS National Hydrography Dataset (NHD) service from The National Map is a comprehensive set of digital spatial data that encodes information about naturally occurring and constructed bodies of surface water (lakes, ponds, and reservoirs), paths through which water flows (canals, ditches, streams, and rivers), and related entities such as point features (springs, wells, stream gages, and dams). The information encoded about these features includes classification and other characteristics, delineation, geographic name, position and related measures, a "reach code" through which other information can be related to the NHD, and the direction of water flow. The network of reach codes delineating water and transported material flow allows users to trace movement in upstream and downstream directions. In addition to this geographic information, the dataset contains metadata that supports the exchange of future updates and improvements to the data. The NHD is available nationwide in two seamless datasets, one based on 1:24,000 (or larger) scale and referred to as high resolution NHD, and the other based on 1:100,000 scale and referred to as medium resolution NHD. The NHD from The National Map supports many applications, such as making maps, geocoding observations, flow modeling, data maintenance, and stewardship. The NHD is commonly combined with other data themes, such as boundaries, elevation, structures, and transportation, to produce general reference base maps. The National Map download client allows free downloads of public domain NHD data in either Esri File Geodatabase or Shapefile formats. For additional information on the NHD, go to https://www.usgs.gov/national-hydrography/national-hydrography-dataset. See https://apps.nationalmap.gov/help/ for assistance with The National Map viewer, download client, services, or metadata. Data Refreshed January, 2024.
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025.
DOI: 10.3886/e240307v1
title: HIFLD OPEN Line - Large Scale

description: Please use 3DHP for updated data The USGS National Hydrography Dataset (NHD) service from The National Map is a comprehensive set of digital spatial data that encodes information about naturally occurring and constructed bodies of surface water (lakes, ponds, and reservoirs), paths through which water flows (canals, ditches, streams, and rivers), and related entities such as point features (springs, wells, stream gages, and dams). The information encoded about these features includes classification and other characteristics, delineation, geographic name, position and related measures, a "reach code" through which other information can be related to the NHD, and the direction of water flow. The network of reach codes delineating water and transported material flow allows users to trace movement in upstream and downstream directions. In addition to this geographic information, the dataset contains metadata that supports the exchange of future updates and improvements to the data. The NHD is available nationwide in two seamless datasets, one based on 1:24,000 (or larger) scale and referred to as high resolution NHD, and the other based on 1:100,000 scale and referred to as medium resolution NHD. The NHD from The National Map supports many applications, such as making maps, geocoding observations, flow modeling, data maintenance, and stewardship. The NHD is commonly combined with other data themes, such as boundaries, elevation, structures, and transportation, to produce general reference base maps. The National Map download client allows free downloads of public domain NHD data in either Esri File Geodatabase or Shapefile formats. For additional information on the NHD, go to https://www.usgs.gov/national-hydrography/national-hydrography-dataset. See https://apps.nationalmap.gov/help/ for assistance with The National Map viewer, download client, services, or metadata. Data Refreshed January, 2024.
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025.
DOI: 10.15468/dl.szyuya
title: Occurrence Download

description: A dataset containing 306 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lyciasalamandra luschani"
 ]
}

 The dataset includes 306 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043203-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13782447
title: San Diego County: Active/Closed Business Listing
DOI: 10.15468/dl.2sj75q
title: Occurrence Download

description: A dataset containing 3624 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.23959548849616",
 "DecimalLongitude is less than 6.24265504168056",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 3624 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043204-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tzfpwy
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-107.8188 24.14913, -107.6688 24.14913, -107.6688 24.29913, -107.8188 24.29913, -107.8188 24.14913))"
 ]
}

 The dataset includes 28 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043207-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gkgbt7
title: Occurrence Download

description: A dataset containing 253493 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pastinaca sativa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 253493 records from 1687 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043148-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/cyk9r-jc330
title: Acetonema longum

description: SpoIVA knockout attempt in A. longum Round1
description: <strong>Tilt Series Date:</strong> 2011-11-01</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Matson grew the cells</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
  etl2011-11-01-10_slicer7093.jpg: Peptidoglycan etl2011-11-01-10_slicer7095.jpg: Unknown comb structure etl2011-11-01-10_slicer7096.jpg: Unknown comb structure
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-11-01-10/3dimage_25276/</p>spo4ako20010_full.rec,  Reconstruction (Pixel Size 1.9 nm), 858.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-11-01-10/3dimage_25276/spo4ako20010_full.rec"
        > <i class="download icon"></i> Download </a></p>

        spo4ako20010.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-11-01-10/rawdata/spo4ako20010.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/gjja4-yc057
title: Pfl 072309 359bl

description: Prosthecobacter fluviatilis, 09jul27a_359bl_072309_Pfl_027,
description: <strong>Tilt Series Date:</strong> 2009-07-27</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter fluviatilis</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
  mpa2009-07-27-24_slicer9213.jpg: flat vesicle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-07-27-24/rawdata/</p>09jul27a_359bl_072309_Pfl_027.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09jul27a_359bl_072309_Pfl_027.rec,  Reconstruction (Pixel Size 1.9 nm), 276.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-07-27-24/3dimage_13907/09jul27a_359bl_072309_Pfl_027.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/4pkt7-dch05
title: Bacillus subtilis JFG351

description: Raw data files of Bacillus subtilis JFG351
description: <strong>Tilt Series Date:</strong> 2009-07-28</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (60.0°, -60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Jennifer (Pogliano lab)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Induced sporulation t=2.5</p>
<strong>Sample Preparation:</strong> quantifoil grid, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-07-28-1/rawdata/</p>09jul28a_pos3_002.mrc,  Tilt Series (Pixel Size 0.961 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-07-28-1/rawdata/09jul28a_pos3_002.mrc"
        > <i class="download icon"></i> Download </a></p>

        cell2_full.rec,  Reconstruction (Pixel Size 1.922 nm), 954.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-07-28-1/3dimage_6212/cell2_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/4dx6m-sm521
title: B. subtilis AD3268

description: Raw data files of B. subtilis AD3268
description: <strong>Tilt Series Date:</strong> 2011-12-09</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> AD3268, ponA null, Alp7A</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Joe Pogliano</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in LB</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-09-28/rawdata/</p>32680028.mrc,  Tilt Series (Pixel Size 1.9 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-09-28/rawdata/32680028.mrc"
        > <i class="download icon"></i> Download </a></p>

        32680028_part.rec,  Reconstruction (Pixel Size 3.8 nm), 929.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-09-28/3dimage_16119/32680028_part.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/3x77n-dzk27
title: Pdb 020209 407

description: Prosthecobacter debontii, 09feb08c__Pde_grid_020209_407_w1_018,
description: <strong>Tilt Series Date:</strong> 2009-02-08</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter debontii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-02-08-25/rawdata/</p>09feb08c__Pde_grid_020209_407_w1_018.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09feb08c__Pde_grid_020209_407_w1_018.rec,  Reconstruction (Pixel Size 1.9 nm), 124.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>