cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15589374
title: ProteoformDB: A Built-in Application to Generate Proteoform Database (Processing Data)

description: Processing data from MSFragger includes:

1. Phosphoproteome dataset (PDC000313):

- Traditional search in Phospho mode (build proteoform database):

Traditional_phosphoproteome_phospho_config_builddb_psm.tsv

 

2. Proteome data (PDC000311):

- Traditional search in Global mode (labeled as "Global" in the manuscript): 

Traditional_proteome_global_config_abundance_peptide_MD.tsv

 

- Traditional search in Phospho mode (labeled as "Uniprot vP" in the manuscript):

Traditional_proteome_phospho_config_abundance_multi-site_MD.tsv

Traditional_proteome_phospho_config_abundance_peptide_MD.tsv

 

- ProteoformDB search with the proteoform database (labeled as "ProteoformDB" in the manuscript): 

ProteformDB_proteome_abundance_peptide_MD.tsv
DOI: 10.5281/zenodo.15589375
title: ProteoformDB: A Built-in Application to Generate Proteoform Database (Processing Data)

description: Processing data from MSFragger includes:

 

1. Traditional search in Global mode (labeled as "Global" in the manuscript): 

9_26_2024_Traditional_search_global_abundance_peptide_MD.tsv

 

2. Traditional search in Phospho mode (labeled as "Uniprot vP" in the manuscript):



1_22_2025_Traditional_search_phospho_abundance_peptide_MD.tsv

1_22_2025_Traditional_search_phospho_abundance_multi-site_MD.tsv


 

3. ProteoformDB search with the proteoform database (labeled as "ProteoformDB" in the manuscript): 

9_26_2024_ProteformDB_search_method_abundance_peptide_MD.tsv
DOI: 10.5281/zenodo.15589747
title: ProteoformDB: A Built-in Application to Generate Proteoform Database (Processing Data)

description: Processing data from MSFragger includes:

1. Phosphoproteome dataset (PDC000313):

- Traditional search in Phospho mode (build proteoform database):

Traditional_phosphoproteome_phospho_config_builddb_psm.tsv

 

2. Proteome data (PDC000311):

- Traditional search in Global mode (labeled as "Global" in the manuscript): 

Traditional_proteome_global_config_abundance_peptide_MD.tsv

 

- Traditional search in Phospho mode (labeled as "Uniprot vP" in the manuscript):

Traditional_proteome_phospho_config_abundance_multi-site_MD.tsv

Traditional_proteome_phospho_config_abundance_peptide_MD.tsv

 

- ProteoformDB search with the proteoform database (labeled as "ProteoformDB" in the manuscript): 

ProteformDB_proteome_abundance_peptide_MD.tsv
DOI: 10.5281/zenodo.15600741
title: On Riemann Hypothesis

description: Title: Unlocking the Riemann Hypothesis: A Harmonic Approach to Prime Distribution

Description:This paper presents an original approach to the Riemann Hypothesis, one of the most critical unsolved problems in mathematics. The Riemann Hypothesis proposes that all non-trivial zeros of the zeta function lie on the critical line (real part = 1/2) in the complex plane. This assertion, if proven true, would confirm our understanding of the distribution of prime numbers and strengthen the foundation of analytic number theory.

In this research, I reinterpret the zeta function through the lens of harmonic resonance, proposing that the zeros may be viewed as emergent phenomena in a deeper, coherent energy field—what I call the Fifth Element. This model unifies mathematical precision with physical intuition, offering new perspectives on prime structure, wave patterns, and the role of standing frequencies in number theory.

The work is intended for both mathematicians and interdisciplinary researchers exploring the intersection of mathematics, physics, and field dynamics. All derivations, visual mappings, and theoretical interpretations are provided in full. Feedback and collaboration are welcome.
DOI: 10.5281/zenodo.15600742
title: On Riemann Hypothesis

description: Title: Unlocking the Riemann Hypothesis: A Harmonic Approach to Prime Distribution

Description:This paper presents an original approach to the Riemann Hypothesis, one of the most critical unsolved problems in mathematics. The Riemann Hypothesis proposes that all non-trivial zeros of the zeta function lie on the critical line (real part = 1/2) in the complex plane. This assertion, if proven true, would confirm our understanding of the distribution of prime numbers and strengthen the foundation of analytic number theory.

In this research, I reinterpret the zeta function through the lens of harmonic resonance, proposing that the zeros may be viewed as emergent phenomena in a deeper, coherent energy field—what I call the Fifth Element. This model unifies mathematical precision with physical intuition, offering new perspectives on prime structure, wave patterns, and the role of standing frequencies in number theory.

The work is intended for both mathematicians and interdisciplinary researchers exploring the intersection of mathematics, physics, and field dynamics. All derivations, visual mappings, and theoretical interpretations are provided in full. Feedback and collaboration are welcome.
DOI: 10.15468/dl.tqhurk
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudobarbus asper (Boulenger, 1911)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((30.5701 -24.0715,25.5395 -24.0715,25.5395 -28.5786,30.5701 -28.5786,30.5701 -24.0715))"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022166-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12069678
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.15468/dl.zav2a5
title: Occurrence Download

description: A dataset containing 13416 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sida spinosa L."
 ]
}

 The dataset includes 13416 records from 520 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019718-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/r5fv-aj36
title: "BUGS: Universal 3D Gaussian Splatting with a Bi-directional Gaussian Growing Mechanism"

description: "Dense-view reconstruction datasets: Mip-NeRF360, Tanks&Temples and Deep Blending dataset.Sparse-view reconstruction datasets: Mip-NeRF360, DTU and LLFF."
DOI: 10.5281/zenodo.11667073
title: Asian elephants buttress a more stable and complex mammalian community in tropical forest
DOI: 10.5281/zenodo.14950232
title: Datasets for the study "Potential Factors Influencing the 2022–2023 Deceleration of the Central Pine Island Ice Shelf "

description: The MATLAB codes and related datasets are used for generating the figures for the paper "Ice Velocity Variability on the Pine Island Ice Shelf-Part1 and Part2".

Files and variables

File 1: Data_and_Code

Directory 1 : Main_function

Description: Include MATLAB scripts and functions. Each script include discriptions that guide the user how to used it and how to find the dataset that used for processing.

MATLAB Main Scripts: Include the whole steps to process the data, output figures, and output videos.



Script_1_Extraction_velocity_strain_rate_flow_angle_results.m

Script_2_Driving_stress.m

Script_3_Read_ICESat2_h5_files.m

Script_4_SMOS_CryoSat2_Sea_Ice_Thickness.m


MATLAB functions: Five Files that includes MATLAB functions that support the main script:



1_Extract_data_from_2D_result: Include MATLAB functions that used for extract profiles from 2D data.

2_Figure_plotting_code:Include MATLAB functions related to Figures in the paper and support information.


Directory 2: data_and_result

Description: Include directories that store the results output from MATLAB. user only neeed to modify the path in MATLAB script to their own path.



1_vx_vy_v_aggregate_and_error_estimate: inverse weighted average of three ice velocity maps and calculate the error maps

2_strain_rate: store the strain rate results

3_Block_result: times series results that extrac from 2D data.

4_MATLAB_output_png_result: Output Figures would be here

5_ICESat_2: ICESat_2 .h5 files and .mat files

6_MODIS_images: Store MODIS images for creating Movie_S1.avi

shp: grounding line, rock region, ice front, and other shape files.


File 2: PIG_ice_front_1947_2023.zip

Description:**Includes Ice front positions of PIIS shape files from 1947 to 2023, which used for plotting figure.1 in the paper.

File 3 : PIG_DROT_GL_2016_2021.zip

Description:**Includes grounding line positions PIIS shape files from 2016 to 2021, which used for plotting figure.1 in the paper.

Data was derived from the following sources:Those links can be found in MATLAB scripts or in the paper "**Open Research" **section.
DOI: 10.5281/zenodo.15487505
title: Datasets for the study "Deceleration of Pine Island Ice Shelf Linked to Landfast Sea Ice and Margin Interactions, 2020–2023 "

description: The MATLAB codes and related datasets are used for generating the figures for the paper "Ice Velocity Variability on the Pine Island Ice Shelf-Part1 and Part2".

Files and variables

File 1: Data_and_Code

Directory 1 : Main_function

Description: Include MATLAB scripts and functions. Each script include discriptions that guide the user how to used it and how to find the dataset that used for processing.

MATLAB Main Scripts: Include the whole steps to process the data, output figures, and output videos.



Script_1_Extraction_velocity_strain_rate_flow_angle_results.m

Script_2_Driving_stress.m

Script_3_Read_ICESat2_h5_files.m

Script_4_SMOS_Sea_Ice_Thickness.m


MATLAB functions: Five Files that includes MATLAB functions that support the main script:



1_Extract_data_from_2D_result: Include MATLAB functions that used for extract profiles from 2D data.

2_Figure_plotting_code:Include MATLAB functions related to Figures in the paper and support information.


Directory 2: data_and_result

Description: Include directories that store the results output from MATLAB. user only neeed to modify the path in MATLAB script to their own path.



1_vx_vy_v_aggregate_and_error_estimate: inverse weighted average of three ice velocity maps and calculate the error maps

2_strain_rate: store the strain rate results

3_Block_result: times series results that extrac from 2D data.

4_MATLAB_output_png_result: Output Figures would be here

5_ICESat_2: ICESat_2 .h5 files and .mat files

6_MODIS_images: Store MODIS images for creating Movie_S1.avi

shp: grounding line, rock region, ice front, and other shape files.


File 2: PIG_ice_front_1947_2023.zip

Description:**Includes Ice front positions of PIIS shape files from 1947 to 2023, which used for plotting figure.1 in the paper.

File 3 : PIG_DROT_GL_2016_2021.zip

Description:**Includes grounding line positions PIIS shape files from 2016 to 2021, which used for plotting figure.1 in the paper.

File 4 : S1_Images.zip

Description:**Includes Sentinel-1 images for plotting Figure 2-4 in the paper.

Data was derived from the following sources:Those links can be found in MATLAB scripts or in the paper "**Open Research" **section.
DOI: 10.15468/dl.4ph5df
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Kingidium deliciosum (Rchb.f.) H.R.Sweet"
 ]
}

 The dataset includes 47 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019721-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.76rv2s
title: Occurrence Download

description: A dataset containing 117629 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Balaenoptera physalus (Linnaeus, 1758)"
 ]
}

 The dataset includes 117629 records from 471 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019717-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14751189
title: Lubricative Properties of Semi-Crystalline Lipid Systems

description: This dataset contains the files used to substantiate the outcomes of the publication "Lubricative Properties of Semi-Crystalline Lipid Systems".

The dataset includes data used in the following sections:

3.1 Microstructural development



CTP of the samples (CTP_Results.xlsx)

PLM images at 20°C after at least 30d storage (polarized, PLM_Results_20°C.zip)


3.2 Characterization of the crystalline lipid phase at 35°C



SFC measurements for 20-40°C (NMR_Results_SFC.xlsx)

PLM images at 35°C (brightfield, PLM_Results_35°C.zip)

Kernel density estimate PSD crystalline phase @35°C (PLM_Results_ImageAnalysis.xlsx)

Cryo-SEM images at 35°C (CRYOSEM_Results_Crys35°C.zip)


3.3 Flow behavior



Rheological data at 35°C (RHEOLOGY_Results_35°C.zip)


3.4 Lubrication behavior



Tribological data of the 1, 2 and 3th run (TRIBOLOGY_Results_35°C.zip)


Supplementary information



Melting and crystallisation profile of the formulations (DSC_Results_MeltCryst.zip)


Relevant abbreviations:



PO: Palm oil

CO: Canola oil

CTP: Cooling Temperature Profile

DSC: Differential Scanning Calorimetry 

NMR: Nuclear Magnetic Resonance

Cryo-SEM: Cryogenic Scanning Electron Microscopy

PLM: Polarized Light Microscopy

SC: Slow cooling

MC: Medium cooling

FC: Fast cooling
DOI: 10.5281/zenodo.14751190
title: Lubricative Properties of Semi-Crystalline Lipid Systems

description: This dataset contains the files used to substantiate the outcomes of the publication "Lubricative Properties of Semi-Crystalline Lipid Systems".

The dataset includes data used in the following sections:

3.1 Microstructural development



CTP of the samples (CTP_Results.xlsx)

PLM images at 20°C after at least 30d storage (polarized, PLM_Results_20°C.zip)


3.2 Characterization of the crystalline lipid phase at 35°C



SFC measurements for 20-40°C (NMR_Results_SFC.xlsx)

PLM images at 35°C (brightfield, PLM_Results_35°C.zip)

Kernel density estimate PSD crystalline phase @35°C (PLM_Results_ImageAnalysis.xlsx)

Cryo-SEM images at 35°C (CRYOSEM_Results_Crys35°C.zip)


3.3 Flow behavior



Rheological data at 35°C (RHEOLOGY_Results_35°C.zip)


3.4 Lubrication behavior



Tribological data of the 1, 2 and 3th run (TRIBOLOGY_Results_35°C.zip)


Supplementary information



Melting and crystallisation profile of the formulations (DSC_Results_MeltCryst.zip)


Relevant abbreviations:



PO: Palm oil

CO: Canola oil

CTP: Cooling Temperature Profile

DSC: Differential Scanning Calorimetry 

NMR: Nuclear Magnetic Resonance

Cryo-SEM: Cryogenic Scanning Electron Microscopy

PLM: Polarized Light Microscopy

SC: Slow cooling

MC: Medium cooling

FC: Fast cooling
DOI: 10.15468/dl.nxcj32
title: Occurrence Download

description: A dataset containing 14188 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cenchrus echinatus L."
 ]
}

 The dataset includes 14188 records from 548 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019720-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15591164
title: Dataset and Statistical Analysis Results Using SPSS
DOI: 10.5281/zenodo.15591165
title: Dataset and Statistical Analysis Results Using SPSS
DOI: 10.15468/dl.nfmef7
title: Occurrence Download

description: A dataset containing 570263 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Pluvialis squatarola (Linnaeus, 1758))",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 570263 records from 579 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019713-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29106236.v4
title: Septal LYVE1+ macrophages control adipocyte stem cell adipogenic potential

description: Tissue macrophages are a heterogeneous cell population residing in diverse subtissular niches dictating their tissue-specific functions. Here, we assessed the heterogeneity of adipose tissue macrophages (ATM) in regard to their subtissular localization and functional specializations. We identified 3 ATM populations residing in  subtissular niche with distinct turnover, phenotypes and functions: CD209b–LYVE1–CD16.2+ parenchymal ATM, CD209b–LYVE1+CD16.2– capsular ATM and CD209b+LYVE1+CD16.2– septal ATM, the latter specifically localized in white adipose tissue septum in contact with CD26+ adipocyte stem cells (ASC). Septal ATM depletion or their deficiency in transforming growth factor β1 (TGFβ1) expression in the context of HFD changed ASC adipogenic potential promoting a beiging process, thus preventing diet-induced obesity. Our findings highlight the role played by a discrete anatomically-defined macrophage population and their crosstalk with ASC, controlling their fate and ultimately tissue expansion.
DOI: 10.6084/m9.figshare.29246072
title: Mitogenome assembly of three Mystropetalaceae species

description: Mitogenome assembly graphs, contigs and annotation exons for <i>Mystropetalon thomii</i>, <i>Hachettea austrocaledonica</i> and <i>Dactylanthus taylorii</i>.
DOI: 10.6084/m9.figshare.29246072.v1
title: Mitogenome assembly of three Mystropetalaceae species

description: Mitogenome assembly graphs, contigs and annotation exons for <i>Mystropetalon thomii</i>, <i>Hachettea austrocaledonica</i> and <i>Dactylanthus taylorii</i>.
DOI: 10.15468/dl.4jwbqx
title: Occurrence Download

description: A dataset containing 147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation, Specimen)",
 "Country is India",
 "TaxonKey is Garcinia indica"
 ]
}

 The dataset includes 147 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050059-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e77evf
title: Occurrence Download

description: A dataset containing 30889 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Dianthus barbatus"
 ]
}

 The dataset includes 30889 records from 447 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050058-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57702/hee2p4fo
title: curation-tools-test

description: IsSupplementTo: [TODO]; IsSourceOf: [TODO]
DOI: 10.15468/dl.4vmtc7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhopophilus pekinensis",
 "Country is Chinese Taipei",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000281-250827131500795/datasets/export for details.
DOI: 10.17882/43749
title: Dyfamed observatory data

description: In the framework of the French MOOSE project (Mediterranean Ocean Observing System for the Environment), an eulerian time series so-called DYFAMED (Ligurian Sea) performs since 1991 a monthly multidisciplinary monitoring to observe: 1) the evolution of the water mass properties (LIW and WMDW), 2) the carbon export change and 3) the variability of the biological species relative to climate forcing (temperature, acidification).In addition to monthly CTD profiles, a standalone mooring is located in the DYFAMED site with CTD and currents sensors (since 2009) and two sediment traps (Technicap PPS5) for collecting large particles and zooplankton every 15 days (48 samples per year).
DOI: 10.17882/44411
title: LION observatory data

description: The Lion mooring is located in the center of the Gulf of Lion where one of the largest open sea convection happens in the winter period. This open sea convection is an active vertical mixing that concerns the whole northern Mediterranean and can reach great deep in the Gulf of Lion (where it may even reach the bottom ~ 2500m) due to the Mistral and Tramontane, cold and dry winds. This is the phenomenon of dense water formation which is the only mechanism for the ventilation of the deep waters of the entire western Mediterranean. It was observed that the deep waters can be formed 1) in a preconditioned open sea area and 2) on the shelf with a subsequent cascading down the slope. There are therefore two modes whose interannual monitoring is necessary to understand the evolution of Mediterranean deep waters and validate ocean numerical models of the region. The LION mooring is deployed and maintained since 2007. It aims to observe the winter dense water formation affecting the north-western Mediterranean Sea water circulation and deep-sea ecosystem (physical data). The mooring is deployed near the ODAS meteorological surface buoy (ODAS Lion, Meteo France) and integrated in the MOOSE network since 2010. It is part of the FIXO3 and OceanSites systems.
DOI: 10.17882/83244
title: EMSO-Ligure Ouest observatory data (mooring ALBATROSS) from 2021-08 to 2023-11

description: EMSO-Western Ligurian site  (European Multidisciplinary See floor Observatory and water column) is a second generation permanent submarine observatory deployed offshore of Toulon, France, as a follow up of the pioneering ANTARES neutrino telescope.
The Earth and Sea Science (ESS) instrumentation connected to KM3NeT is based on two complementary components: an Instrumented Interface Module (MII) and an autonomous mooring line (ALBATROSS).
The ALBATROSS mooring line is an inductive line (2000 m) composed of an acoustic release system, two wire ropes hosting CTD-O2 sensors and currentmeters, and two instrumented buoys, . This line is deployed at a distance of 2-3 kilometers from the MII, and the shore communication is done through an acoustic link with the MII which is linked to the KM3NeT node.