cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1029370.09fu
title: SH1029370.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6073/pasta/cef96fbc082edb62b3fa5ae54570a69b
title: StreamFRE: Pool area and depth in Prieta Streams

description: Measurements of pool depth in Prieta Stream, as part of the Stream Flow Reduction Experiment (StreamFRE). StreamFRE started in October 2016 with the goal of assessing the effects of droughts on stream ecosystems. The project is designed to assess the effect of flow reduction, the main effect of drought on streams. We collected pre-manipulation data from October 2016 to September 2017, when Hurricanes Irma and Maria hit Puerto Rico. Due to hurricane disturbances, the project became a hurricane impact assessment from September 2017 to early 2022, when the flow reduction is scheduled to start. Each month we measured pool depth by taking 5 random measurements through each of the pools. Values are recorded in cm and reported as average and variability in pool depth. Pool depths measures are collected the same day Decapod are sampled and pictures are taken to determine the pool surface area. Pool depth: Each month we measured pool depth by taking 5 random measurements through each of the pools. Values are recorded in cm and reported as average and variability in pool depth. Pool depths measures are collected the same day Decapod are sampled and pictures are taken to determine the pool surface area. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.
DOI: 10.5281/zenodo.7818855
title: Herbarium specimens reveal century-long trait shifts in poison ivy due to anthropogenic CO2 emissions

description: Dataset for manuscript entitled "Herbarium specimens reveal century-long trait shifts in poison ivy due to anthropogenic CO<sub>2</sub> emissions." Contains one spreadsheet file ("Ng et al 2023 Poison Ivy trait data.xlsx"). Note that metadata can be found in first tab.
DOI: 10.5281/zenodo.7818854
title: Herbarium specimens reveal century-long trait shifts in poison ivy due to anthropogenic CO2 emissions

description: Dataset for manuscript entitled "Herbarium specimens reveal century-long trait shifts in poison ivy due to anthropogenic CO<sub>2</sub> emissions." Contains one spreadsheet file ("Ng et al 2023 Poison Ivy trait data.xlsx"). Note that metadata can be found in first tab.
DOI: 10.5519/qd.4dui7yfw
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (8756 records)
DOI: 10.6084/m9.figshare.22589149
title: New fluorinated cyclophosphazenes: synthesis, properties, applications

description: The work presents the synthesis and characterization of fluorinated cyclophosphazenes, which are readily soluble in supercritical CO<sub>2</sub> and can be used as textile finishing chemicals in a supercritical CO<sub>2</sub> deposition process. The reaction of hexachlorocyclophosphazene with sodium alcoholate of 3,3,4,4,5,5,6,6,7,7,8,8,8-tridecafluoro-1-octanol was performed. The reaction product analysis suggested that all parent hexachlorocyclophosphazene molecules participated in the reaction, 4- and 5-substituted fluorinated cyclophosphazene molecules comprised most of the reaction product. Cloud point measurements confirmed that the product is soluble in supercritical CO<sub>2</sub> at moderate conditions. Fluorinated cyclophosphazene coating was deposited from solutions in supercritical CO<sub>2</sub> onto cotton textile. Scanning electron microscopy revealed that the coating is deposited uniformly. The textile after treatment was hydrophobic with an initial contact angle of 106 ± 8 degrees. The obtained fluorinated cyclophosphazenes can be considered as building blocks for the further development of phosphazenes that are soluble in sc CO<sub>2</sub> and can be used as hydrophobic finishing chemicals with improved properties.
DOI: 10.6084/m9.figshare.22589149.v1
title: New fluorinated cyclophosphazenes: synthesis, properties, applications

description: The work presents the synthesis and characterization of fluorinated cyclophosphazenes, which are readily soluble in supercritical CO<sub>2</sub> and can be used as textile finishing chemicals in a supercritical CO<sub>2</sub> deposition process. The reaction of hexachlorocyclophosphazene with sodium alcoholate of 3,3,4,4,5,5,6,6,7,7,8,8,8-tridecafluoro-1-octanol was performed. The reaction product analysis suggested that all parent hexachlorocyclophosphazene molecules participated in the reaction, 4- and 5-substituted fluorinated cyclophosphazene molecules comprised most of the reaction product. Cloud point measurements confirmed that the product is soluble in supercritical CO<sub>2</sub> at moderate conditions. Fluorinated cyclophosphazene coating was deposited from solutions in supercritical CO<sub>2</sub> onto cotton textile. Scanning electron microscopy revealed that the coating is deposited uniformly. The textile after treatment was hydrophobic with an initial contact angle of 106 ± 8 degrees. The obtained fluorinated cyclophosphazenes can be considered as building blocks for the further development of phosphazenes that are soluble in sc CO<sub>2</sub> and can be used as hydrophobic finishing chemicals with improved properties.
DOI: 10.6084/m9.figshare.22047367
title: Reactions of substituted arynes and diphenylphosphine oxide or diphenylphosphine-borane complex toward dibenzophospholes – impact of aryne substituents

description: The reaction of diphenylphosphine oxide successively with two aryne precursors was investigated in order to access valuable functionalizable nonsymmetrical dibenzophospholes. The reactions proved sensitive to substituents of aryne precursors able to coordinate the incoming lithiated nucleophile.
DOI: 10.6084/m9.figshare.22047367.v1
title: Reactions of substituted arynes and diphenylphosphine oxide or diphenylphosphine-borane complex toward dibenzophospholes – impact of aryne substituents

description: The reaction of diphenylphosphine oxide successively with two aryne precursors was investigated in order to access valuable functionalizable nonsymmetrical dibenzophospholes. The reactions proved sensitive to substituents of aryne precursors able to coordinate the incoming lithiated nucleophile.
DOI: 10.6073/pasta/1d3d506d0de6da8d40e84814a104920c
title: StreamFRE-Shrimp assemblages in Prieta Stream

description: Stream Flow Reduction Experiment (StreamFRE) shrimp assemblages in Prieta Stream. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.
DOI: 10.6073/pasta/b764e19de06f98d07a6dd119725d3d92
title: StreamFRE: Downstream leaf litter exports in Prieta and lateral and vertical leaf litter inputs.

description: StreamFRE: Downstream leaf litter exports in Prieta and lateral and vertical leaf litter inputs. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.
DOI: 10.25345/c5bc3t681
title: MassIVE MSV000091680 - Regulation of the secreted proteome of the lone star tick (Amblyomma americanum) by ATP-sensitive inward rectifier potassium channels
title: Understanding the molecular basis of tick salivary gland physiology will be beneficial for developing novel intervention strategies to control tick populations and curb disease transmission. Pharmacological activation of ATP-gated inward rectifier potassium (KATP) channels reduced fluid secretion from isolated salivary gland and blood feeding in the lone star tick, Amblyomma americanum, yet the temporal expression pattern of KATP channel proteins remained unknown. We conducted immunohistochemistry and pharmacological assays on the salivary gland from unfed to fully engorged ticks to define temporal expression of KATP channels. KATP channels were highly expressed in Type II and III acini in off-host stage and early feeding phase ticks, yet expression was reduced in later stages of feeding. In addition, we assessed KATP channel regulation of the secreted proteome of tick saliva by LC-MS/MS analysis and western blots. Of the 573 non-redundant proteins, 40 were differentially secreted after exposure to KATP activators or inhibitors and, of significance, previously validated immunogenic tick saliva proteins were differentially secreted by upwards of 8 log units. The LCMS/MS data were validated with western blots that showed that pro-tick feeding saliva proteins AV422, AAS27, and AAS41 were differentially secreted after exposure to KATP activators or inhibitors. Importantly, significant differences in feeding biology were observed after exposure to activators or inhibitors of KATP channels with inhibition and stimulation of feeding, respectively that verified differential protein secretion after exposure to KATP modulators is correlated to changes to blood feeding behavior. Data indicate KATP channels have a dynamic expression pattern during tick whole feeding period that is likely attributable to the role of KATP channels in regulating pro-feeding saliva proteins, which are required during early feeding phases.
DOI: 10.25438/wes02.21936052
title: 2020 Presidential Political TV Ad Airing Data

description: This item contains 2020 Presidential Political TV Ad Airing Data. There are separate (zipped) files for SPSS and Stata 13. <br> Contractual obligations with our data provider, Kantar/CMAG, necessitate that we limit access to the data to members of academic institutions using the data for academic purposes. To learn more and purchase data visit https://mediaproject.wesleyan.edu/dataaccess/. <br> This item is part of the project 2020 Presidential Political TV Ad Airings Data.
DOI: 10.25438/wes02.21936052.v1
title: 2020 Presidential Political TV Ad Airing Data

description: This item contains 2020 Presidential Political TV Ad Airing Data. There are separate (zipped) files for SPSS and Stata 13. <br> Contractual obligations with our data provider, Kantar/CMAG, necessitate that we limit access to the data to members of academic institutions using the data for academic purposes. To learn more and purchase data visit https://mediaproject.wesleyan.edu/dataaccess/. <br> This item is part of the project 2020 Presidential Political TV Ad Airings Data.
DOI: 10.6073/pasta/e47a875831ccf8de7eada4c9c26ca972
title: fungal interactions during tropical leaf decomposition

description: Fungal interactions during leaf decomposition can facilitate or inhibit other fungi. This experiment focused on whether preconditioning of leaf litter by microfungi that were confined to one leaf (Unit-Restricted) made leaf litter less likely to be colonized and decomposed by basidiomycetes that bind litter into mats (Non-Unit- Restricted) than non-preconditioned litter. Leaves of Manilkara bidentata in litterbags were preconditioned by incubating them for 0, 1, 2 or 3 months in flat litter/seed rain baskets 10 centimeters above the forest forest floor to avoid colonization by basidiomycete fungi. Preconditioned and non-preconditioned leaves were transferred to 5 replicate basidiomycete fungal mats of Gymnopus johnstonii for 6 weeks. Both attachment by basidiomycete fungi and percent mass loss after 6 weeks decreased significantly with increasing preconditioning time. In non-preconditioned leaves, gamma irradiation did not affect mass loss or percent white-rot despite having significantly increased numbers of basidiomycete fungal connections as compared to non-irradiated leaves. In non-preconditioned leaves, more basidiomycete attachments to non-irradiated than irradiated leaves suggest facilitation by phyllosphere microfungi. While basidiomycete colonization was initially facilitated by phyllosphere fungi, we inferred that degradation of resource quality led to fewer fungal attachments and less mass loss after 1-3 months of preconditioning by microfungi. There is a 1-month time window for basidiomycete fungi to incorporate fallen leaves into their litter mats. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.
DOI: 10.25345/c56m33d5r
title: MassIVE MSV000091681 - Distinct dephosphorylation site signatures of PP1 and PP2A-B55 coordinate mitotic exit.
title: Mitotic exit requires extensive dephosphorylation of Ser/Thr residues by the PP1 and PP2A-B55 protein phosphatases in human cells. Several aspects of this are poorly understood including specific substrates and determinants of phosphatase specificity. Here we develop a novel in vitro assay, MRBLE-dephos, that allows multiplexing of dephosphorylation reactions to determine phosphatase specificity. Using MRBLE-dephos, we establish amino acid preferences of the residues surrounding the phosphorylation site for PP1 and PP2A-B55, which reveals common and unique preferences for the two phosphatases. We use specific inhibition of PP1 and PP2A-B55 in mitotic exit lysates coupled with quantitative phosphoproteomics to identify more than 2000 regulated phosphorylation sites and integrate this with mitotic interactomes to obtain a comprehensive map of mitotic dephosphorylation events. Importantly, the sites dephosphorylated during mitotic exit reveal key signatures that are consistent with the MRBLE-dephos results. We use these insights to specifically alter INCENP dephosphorylation kinetics at mitotic exit resulting in defective cytokinesis underscoring the biological relevance of our determined specificity principles. Finally, we provide a comprehensive characterization of PP1 binding motifs and show how these can shape dephosphorylation and how PP1 primes its own association with these motifs at mitotic exit. Collectively we provide a framework for understanding mitotic exit regulation by dephosphorylation and novel approaches to dissect protein phosphatase specificity.
DOI: 10.34740/kaggle/dsv/5375098
title: Balochi Language to English Translation Dataset
DOI: 10.6084/m9.figshare.19650720
title: Current and Historical Publication Trends of State Library Association Journals and Newsletters

description: A list of current and historical journal and newsletter titles with publication dates, ISSNs, and OCLC numbers. Includes a list of state library association electronic journals and newsletters, whether they are available online, open source, what format they are in, and whether they are up to date.
DOI: 10.6084/m9.figshare.19650720.v2
title: Current and Historical Publication Trends of State Library Association Journals and Newsletters

description: A list of current and historical journal and newsletter titles with publication dates, ISSNs, and OCLC numbers. Includes a list of state library association electronic journals and newsletters, whether they are available online, open source, what format they are in, and whether they are up to date.
DOI: 10.6084/m9.figshare.19650720.v1
title: State Library Association Journals Publication Years and Frequency

description: A list of current and historical journal and newsletter titles with publication dates, ISSNs, OCLC numbers.
DOI: 10.6084/m9.figshare.22589032
title: Prediction of depression in 5th graders: text-based study

description: Dataset contains data from 102 Czech pupils (43 boys, 59 girls) of 5th grade aged from 10 to 12 years. Depression was measured using the Children's Depression Inventory (CDI), Q1-Q27 are item answers. Furthermore, the children were assigned to write an informal text, a letter from the holidays, columns from WC (wordcount) to Other P are LIWC items from letter text.
DOI: 10.5281/zenodo.7819087
title: The LuF dataset for FinderNet

description: unreal environment and the sequences used to train the model in FinderNet
DOI: 10.5281/zenodo.7819086
title: The LuF dataset for FinderNet

description: unreal environment and the sequences used to train the model in FinderNet
DOI: 10.5281/zenodo.7814685
title: Data for Spaulding-Astudillo and Mitchell (2023), "Effects of varying saturation vapor pressure on climate, clouds, and convection"

description: Data for Spaulding-Astudillo and Mitchell (2023), "Effects of varying saturation vapor pressure on climate, clouds, and convection" The main directories have a common nomenclature: e.g., TEST_1360_FSC_288K_1p0, where 1360 is the insolation, FSC indicates that it is a full-sky radiation run, 288 K is the initial surface temperature, and the multiplicative factor on the saturation vapor pressure of water is 1p0, meaning 1.0. In every directory, each .nc file contains 5 years of model output. There are 5 types of .nc files, which correspond to different output streams of ECHAM6. The main output stream is ..._echam.nc.
DOI: 10.5281/zenodo.7814684
title: Data for Spaulding-Astudillo and Mitchell (2023), "Effects of varying saturation vapor pressure on climate, clouds, and convection"

description: Data for Spaulding-Astudillo and Mitchell (2023), "Effects of varying saturation vapor pressure on climate, clouds, and convection" The main directories have a common nomenclature: e.g., TEST_1360_FSC_288K_1p0, where 1360 is the insolation, FSC indicates that it is a full-sky radiation run, 288 K is the initial surface temperature, and the multiplicative factor on the saturation vapor pressure of water is 1p0, meaning 1.0. In every directory, each .nc file contains 5 years of model output. There are 5 types of .nc files, which correspond to different output streams of ECHAM6. The main output stream is ..._echam.nc.
DOI: 10.34740/kaggle/dsv/5375234
title: NSE-Scripts-Data
DOI: 10.25345/c52v2cm23
title: MassIVE MSV000091682 - Mass spectrometry data for RNA-binding proteins in Arabidopsis thaliana
title: This contains raw Mass-spec data of the RNA-binding proteins from Arabidopsis using both Plant Phase Extraction (PPE) and mRNA-interactome capture (RIC).
DOI: 10.6084/m9.figshare.14779497.v1
title: Construction of lncRNA-related ceRNA regulatory network in diabetic subdermal endothelial cells

description: Long non-coding RNAs (lncRNAs) were considered to be involved in vascular complications in diabetes mellitus, but still only limited knowledge in this regard has been obtained. Herein, we further explored the roles of lncRNAs and mRNAs in diabetic vasculopathy (DV) through conducting bioinformatics analysis using data set downloaded from GEO database. The differentially expressed lncRNAs and mRNAs were identified by edge package. GO enrichment analysis and KEGG pathway analysis were performed based on clusterprofiler package. The relationship between lncRNA and miRNA was predicted using starBase database, and the potential mRNAs targeted by miRNAs were predicted by TargetScan, miRTarbase and miRDB database. The string database was used to analyze the protein-protein interaction (PPI). As a result, a total of 12 lncRNAs and 711 mRNAs were found to be differentially expressed in the diabetic subdermal endothelial cells compared with normal controls. A ceRNA network was established, which was composed of seven lncRNA nodes, 49 miRNA nodes, 58 mRNA nodes and 183 edges, and MSC-AS1 and LINC01550 may serve as key nodes. GO function enrichment analysis showed enrichments of epithelial cell proliferation, intercellular junction, and cell adhesion molecule binding. KEGG pathway analysis revealed 33 enriched pathways. PPI protein interaction analysis identified 57 potential ceRNA-related proteins. Overall, this study suggests that multiple lncRNAs, specifically MSC-AS1 and LINC01550, may play an important role in DV development and they are like to be developed as the therapeutic targets for DV. However, further experiments in vitro and in vivo should be conducted to validate our results.
DOI: 10.25582/data.2023-01.2713540/2291401
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2720921/2291402
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.19498113
title: Additional file 13 of Time-series transcriptome comparison reveals the gene regulation network under salt stress in soybean (Glycine max) roots

description: Additional file 13: Table S1. The source information of 22 soybean germplasms.
DOI: 10.25582/data.2023-01.2720801/2291403
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.19498113.v1
title: Additional file 13 of Time-series transcriptome comparison reveals the gene regulation network under salt stress in soybean (Glycine max) roots

description: Additional file 13: Table S1. The source information of 22 soybean germplasms.
DOI: 10.25582/data.2023-01.2722738/2291404
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2723371/2291405
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2720973/2291406
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2717895/2291407
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2720485/2291408
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2717919/2291409
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-02.2726449/2291410
title: Data for EMSL Project 51287 from February 2023
DOI: 10.25582/data.2023-01.2722731/2291411
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2718368/2291412
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2711906/2291413
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2717283/2291414
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2718286/2291415
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25549/usctheses-c3-439600
title: etd-ShokoohiKi-2674~2
DOI: 10.25582/data.2023-02.2731535/2291416
title: Data for EMSL Project 51287 from February 2023
DOI: 10.25582/data.2023-02.2732176/2291417
title: Data for EMSL Project 51287 from February 2023
DOI: 10.25582/data.2023-02.2731694/2291418
title: Data for EMSL Project 51287 from February 2023
DOI: 10.25582/data.2023-01.2722560/2291419
title: Data for EMSL Project 51287 from January 2023