cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.0gb5mkm3q
title: Data from: female preference for super-sized male ornaments and its implications for the evolution of ornament allometry

description: It has been argued that disproportionately larger ornaments in bigger
 males—positive allometry—is the outcome of sexual selection operating on
 the size of condition dependent traits. We reviewed the literature and
 found a general lack of empirical testing of the assumed link between
 female preferences for large ornaments and a pattern of positive allometry
 in male ornamentation. We subsequently conducted a manipulative experiment
 by leveraging the unusual terrestrial fish, Alticus sp.
 cf. simplicirrus, on the island of Rarotonga. Males in this
 species present a prominent head crest to females during courtship, and
 the size of this head crest in the genus more broadly exhibits the classic
 pattern of positive allometry. We created realistic male models
 standardized in body size but differing in head crest size based on the
 most extreme allometric scaling recorded for the genus. This included a
 crest size well outside the observed range for the study population
 (super-sized). The stimuli were presented to free-living females in a
 manner that mimicked the spatial distribution of courting males. Females
 directed greater attention to the male stimulus that exhibited the
 super-sized crest, with little difference in attention direct to other
 size treatments. These data appear to be the only experimental evidence
 from the wild of a female preference function that has been implicitly
 assumed to drive selection that results in the evolution of positive
 allometry in male ornamentation.
description: Please see main paper for full methodological details and the
 associated 'read me' document lodged with this data
 set
description: Please see the assocaited 'read me' document for full
 details
DOI: 10.5061/dryad.t4b8gtj4k
title: Phylogeny and evolution of Cupressaceae: updates on intergeneric relationships and new insights on ancient intergeneric hybridization

description: After the merger of the former Taxodiaceae and Cupressaceae s.s.,
 currently the conifer family Cupressaceae (sensu lato) comprises seven
 subfamilies and 32 genera, most of which are important components of
 temperate and mountainous forests. With the exception of a recently
 published genus-level phylogeny of gymnosperms inferred from sequence
 analysis of 790 orthologs, previous phylogenetic studies of Cupressaceae
 were based mainly on morphological characters or a few molecular markers,
 and did not completely resolve the intergeneric relationships. In this
 study, we reconstructed a robust and well-resolved phylogeny of
 Cupressaceae represented by all 32 genera, using 1944 genes (Orthogroups)
 generated from transcriptome sequencing. Reticulate evolution analyses
 detected a possible ancient hybridization that occurred between ancestors
 of two subclades of Cupressoideae, including
 Microbiota-Platycladus-Tetraclinis (MPT) and
 Juniperus-Cupressus-Hesperocyparis-Callitropsis-Xanthocyparis (JCHCX),
 although both concatenation and coalescent trees are highly supported.
 Moreover, divergence time estimation and ancestral area reconstruction
 indicate that Cupressaceae very likely originated in Asia in the Triassic,
 and geographic isolation caused by continental separation drove the
 vicariant evolution of the two subfamilies Cupressoideae and Callitroideae
 in the northern and southern hemispheres, respectively. Evolutionary
 analyses of some morphological characters suggest that helically arranged
 linear-acicular leaves and imbricate bract-scale complexes represent
 ancestral states, and the shift from linear-acicular leaves to scale-like
 leaves was associated with the shift from helical to decussate
 arrangement. Our study sheds new light on phylogeny and evolutionary
 history of Cupressaceae, and strongly suggests that both dichotomous
 phylogenetic and reticulate evolution analyses be conducted in
 phylogenomic studies.
DOI: 10.5061/dryad.np5hqbzwc
title: Data from: Explaining productivity variation in response to nitrogen addition and warming requires intraspecific variability

description: 1. Recent studies have shown that intraspecific trait variability is an
 important source of total trait variation. However, the contribution of
 intraspecific variability to ecosystem functions in the face of global
 change remains unknown. 2. We measured plant height, leaf area, specific
 leaf area, leaf dry matter content and leaf thickness of 26 species at
 individual or leaf level and aboveground net primary productivity in 48
 subplots subjected to 8 years of nitrogen addition and warming in a
 Tibetan alpine meadow. We split community weighted mean (CWM) and Rao’s
 quadratic entropy (Rao) of individuals’ traits within a given community
 into “fixed value” (only caused by interspecific difference of traits) and
 intraspecific variability (only caused by intraspecific difference),
 respectively, using a variance partitioning method. 3. We found that
 productivity showed a humped back response to nitrogen addition: it was
 highest at intermediate levels of nitrogen fertilization. The response
 trend was mediated by the changes of plant functional structure.
 Productivity was positive with fixed Rao of plant height and intraspecific
 variability of leaf area, i.e. community having higher fixed variability
 of plant height and individuals producing bigger leaf area can increase
 productivity via niche complementary and dominance effect. Warming reduced
 productivity directly and marginally decreased individuals’ leaf area
 which suppresses productivity indirectly. 4. Our research suggests the
 non-negligible role of plant intraspecific trait variability in
 maintaining ecosystem functions, especially in the face of global change.
DOI: 10.5061/dryad.kkwh70s6z
title: Data from: Evaluating staging habitat quality to advance the conservation of a declining migratory shorebird, Red Knot Calidris canutus

description: Identifying where and when population “bottlenecks” occur is critical to
 the conservation of migratory species, many of which are declining
 precipitously worldwide. Especially challenging is the evaluation of
 changes to staging sites. These sites are indispensable links in the
 migratory cycle but are typically used only briefly. We devised a
 field-based approach to assess the quality and carrying capacity of a
 critical staging site in Nanpu, China, for the declining, migratory Red
 Knot (Calidris canutus rogersi & C. c. piersmai) during northward
 migration. The Nanpu tidal flat supports 50,000-100,000 Red Knots
 annually, and while there, the knots feed almost exclusively on the
 bivalve Potamocorbula laevis. We simultaneously monitored changes in the
 abundance of Red Knots and bivalves across the entire staging site in
 spring 2018. After taking into account potential competition with other
 shorebird species, we estimated that the Nanpu tidal flat was capable of
 supporting approximately 1.46-1.70 times the current observed level of
 usage of the site by Red Knots, and therefore is operating below, but
 close, to carrying capacity with respect to food resources for Red Knots.
 This result suggests that any further development of this site could harm
 the EAAF Red Knot population. Synthesis and applications: Quantitative
 monitoring and evaluation of habitat quality of staging sites are
 essential to successfully conserve declining migratory species. In
 particular, researchers and conservation practitioners should incorporate
 both population size and staging duration in order to more accurately
 assess the importance of different sites and to quantify how changes in
 staging habitat quality may translate into changes in migrant population
 sizes at both local and global scales.
description: See README_Nanpu2018.txt
DOI: 10.5518/1497
title: Data from Evaluating the Recommended Summary Plan for Emergency Care and Treatment (ReSPECT) in Primary Care

description: Materials used in workshops with people with a learning disability, accessible participant information sheet and consent form and topic guide for carers of people with a learning disability in focus group or interview for Evaluating the Recommended Summary Plan for Emergency Care and Treatment (ReSPECT) in Primary Care (NIHR HS&DR 13/13/16).
DOI: 10.5061/dryad.c2fqz61bj
title: The OpenFeeder: a flexible automated RFID feeder to measure inter and intraspecies differences in cognitive and behavioral performance in wild birds

description: Understanding the ecology and evolution of personality and cognition
 requires the development of new tools to measure individual and species
 differences in behavioral and cognitive performances in wild populations.
 Furthermore, such tools should facilitate collection of large sample
 sizes, evaluate the repeatability of measured traits and allow direct
 comparison of species performances across a variety of behavioural tasks.
 Here we present a RFID-based feeder (OpenFeeder) designed to run visual
 cognitive tasks in wild animals. We illustrate the flexibility of the tool
 showing performances of three wild passerine species (Parus major,
 Cyanistes caeruleus and Poecile palustris) in an associative learning
 task. We recorded performances of a large number of individuals
 (&gt;300) in the wild and showed both inter and intraspecific
 differences in associative learning. We also found moderate to high
 repeatability in individual differences in associative learning in each
 species. We show that the OpenFeeder is a flexible tool to record
 performance in multiple cognitive and behavioural tasks in free ranging
 animals across a variety of passerine species. The design, firmware, and
 software are open source to facilitate use in a wide variety of species
 and thus allow continuous improvement of the system and development of new
 behavioural and cognitive tasks. In doing so, we hope that this tool will
 be used by a large community of cognitive ecologists and comparative
 psychologists for both within and across species studies. Furthermore, our
 system should facilitate replication of results across populations along
 large-scale environmental gradients to improve our understanding of the
 role ecology plays in the evolution of cognitive traits.
description: We used automated RFID feeders to collect the data. All analysed
 are performed in R.
DOI: 10.15468/dl.y8qcmu
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is ZFMK Ichthyology collection",
 "TaxonKey is Thymallus aeliani"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003127-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.2v6wwpzr7
title: Data from: Chimpanzee communities differ in their inter- and intrasexual social relationships

description: Male and female human social bonding strategies are both culturally and
 genetically shaped. Chimpanzees, our phylogenetically joint closest living
 relatives, exhibit complex social structures and show impressive cultural
 diversity. Whether chimpanzee male and female bonding patterns are
 culturally shaped remains unclear. Studies of wild chimpanzees bonding
 across sex show that in some communities males show strong bonds with
 other males, whereas in others females form particularly strong intra-sex
 bonds. This suggests that there may be cultural variation in chimpanzee
 social bonding patterns, but excluding genetic or ecological explanations
 when comparing different wild populations is difficult. Here, we applied
 social network analysis to examine male and female social bonds in two
 neighbouring semi-wild chimpanzee groups of comparable ecological
 conditions and subspecies compositions, but that differ in demographic
 makeup. Results showed differences in bonding strategies across the two
 groups. While female-female proximity associations were significantly
 stronger in Group 1 (which had an even distribution of males and females)
 than Group 2 (which had a higher proportion of females than males), there
 were no such differences for male-male or male-female associations.
 Conversely, female-female grooming bonds were stronger in Group 2 than
 Group 1. We also found that, in line with captive studies but contrasting
 research with wild chimpanzees, maternal kinship strongly predicted
 proximity and grooming patterns across the groups. Our findings suggest
 that, as with humans, male and female chimpanzee social bonds are
 influenced by the specific social group they live in, rather than
 predisposed sex-based bonding strategies.
description: Observational data on social interactions.
DOI: 10.5061/dryad.vdncjsxxj
title: Data from: Robust single-image tree diameter estimation with mobile phones

description: Ground-based forest inventories are a key element of forest carbon
 monitoring, reporting, and verification schemes and a cornerstone of
 forest ecology research. Recent work using LiDAR-equipped mobile phones to
 automate parts of the forest inventory process assumes that tree trunks
 are well-spaced and visually unoccluded, or else requires manual
 intervention or offline processing to identify and measure tree trunks. In
 this paper, we design an algorithm that exploits a low-cost smartphone
 LiDAR sensor to estimate trunk diameter automatically from a single image
 in complex and realistic field conditions. We implement our design and
 build it into an app on a Huawei P30 Pro smartphone, demonstrating that
 the algorithm has low enough computational cost to run on this commodity
 platform in near real-time. We evaluate our app in three different forests
 across three seasons and find that in a corpus of 97 sample tree images,
 our app estimates trunk diameter with RMSE of 3.7 cm (R2 = .97; 8.0% mean
 error) compared to manual DBH measurement. It achieves a 100% tree
 detection rate while reducing surveyor time by up to a factor of 4.6. Our
 work contributes to the search for a low-cost, low-expertise alternative
 to Terrestrial Laser Scanning that is nonetheless robust and efficient
 enough to compete with manual methods. We highlight the challenges that
 low-end mobile depth scanners face in occluded conditions and offer a
 lightweight, fully automatic approach for segmenting depth images and
 estimating trunk diameter despite these challenges. Our approach lowers
 the barriers to in situ forest measurement outside of an urban or
 plantation context, maintaining a tree detection and accuracy rate
 comparable to previous mobile phone methods even in complex forest
 conditions.
description: For details of data collection methods, see Materials &
 Methods, Section 3.4 in the corresponding paper. The
 data was processed using code available at https://github.com/ameliaholcomb/trees The output results can be reproduced in a file called results.csv (along with images demonstrating the processing steps) by running $ python3 OfflineProcessing/v2_DepthAssistedSegmentation/RGBD.py /path/to/image/data /path/to/reference_widths.txt /path/to/output/directory
description: The files with no extension are depth images, which are stored in
 the format<br>(x-coordinate of pixel, y-coordinate of pixel, depth
 measurement of pixel, confidence value)<br>as returned directly from
 the phone depth sensor. The manually measured tree
 diameters for each plot are stored in reference_widths.txt, in the
 format<br>sample_number:diameter_in_m The image
 file names are formatted
 as<br>Capture_Sample_{sample_number}_{capture_number}<br>The
 capture numbers are to ensure unique file naming. The sample numbers
 correspond to the sample numbers listed in reference_widths.txt
DOI: 10.5061/dryad.dr7sqvb1n
title: Evolutionary determinants of non-seasonal breeding in wild chacma baboons

description: Animal reproductive phenology varies from strongly seasonal to
 non-seasonal, sometimes among closely related or sympatric species. While
 the extent of reproductive seasonality is often attributed to
 environmental seasonality, this fails to explain many cases of
 non-seasonal breeding in seasonal environments. We investigated the
 evolutionary determinants of non-seasonal breeding in a wild primate, the
 chacma baboon (Papio ursinus), living in a seasonal environment with high
 climatic unpredictability. We tested three hypotheses proposing that
 non-seasonal breeding has evolved in response to (1) climatic
 unpredictability, (2) reproductive competition between females favoring
 birth asynchrony, and (3) individual, rank-dependent variations in optimal
 reproductive timing. We found strong support for an effect of reproductive
 asynchrony modulated by rank: (i) birth synchrony is costly to subordinate
 females, lengthening their interbirth intervals, (ii) females alter their
 reproductive timings (fertility periods and conceptions) in relation to
 previous conceptions in the group, and (iii) the reported effect of birth
 synchrony on interbirth intervals weakens the intensity of reproductive
 seasonality at the population level. This study emphasizes the importance
 of sociality in mediating the evolution of reproductive phenology in
 group-living organisms, a result of broad significance for understanding
 key demographic parameters driving population responses to increase
 climatic fluctuations.
description: We gathered this dataset with the longitudinal studies of three
 habituated chacma baboon troops with the Tsaobis Baboon Projet, in
 Namibia. 
description: Please read the README file before running the scripts.
DOI: 10.5061/dryad.g79cnp5s0
title: Data from: The importance of population heterogeneities in detecting social learning as the foundation of animal cultural transmission

description: High levels of within-population behavioural variation can have drastic
 demographic consequences, thus changing the evolutionary fate of
 populations. A major source of within-population heterogeneity is
 personality. Nonetheless, it is still relatively rarely accounted for in
 social learning studies that constitute the most basic process of cultural
 transmission. Here, we perform in female mosquitofish (Gambusia holbrooki)
 a social learning experiment in the context of mate choice, a situation
 called mate copying, and for which there is strong evidence that it can
 lead to the emergence of persistent traditions of preferring a given male
 phenotype. When accounting for the global tendency of females to prefer
 lager males but ignoring differences in personality we detected no
 evidence for mate copying. However, when accounting for the bold-shy
 dichotomy, we found that bold females did not show any evidence for mate
 copying, while shy females showed significant amounts of mate copying.
 This illustrates how the presence of variation in personality can hamper
 our capacity to detect mate copying. We conclude that mate copying may be
 more widespread than we thought because many studies ignored the presence
 of within-population heterogeneities.
description: The dataset contains size and time measures collected in
 behavioural experiments with the Eastern mosquitofish.
DOI: 10.5061/dryad.8gtht76rp
title: How does the selection of National Development Zones affect urban green innovation?

description: The launch of the selection process for National Development Zones (NDZs)
 marked a fundamental change in the construction of development zones,
 making it an essential position for local authorities to implement
 high-quality development. Based on the data of prefecture-level cities in
 China from 2000 to 2018, this paper examines the impact and mechanism of
 selecting NDZs on urban green innovation through a double-difference
 spatial durbin model using the selection of NDZs as a “quasi-natural
 experiment”. The study finds that the selection of NDZs can promote green
 innovation in cities and has a significant window-radiating effect. The
 heterogeneity test results show that the implementation of the selection
 policy for development zones in non-old industrial cities, large and
 medium-sized cities, cities with easy access to transportation, and cities
 with high market orientation are more likely to promote urban green
 innovation. At the same time, the higher the level of government
 governance and the better the level of economic development of the
 development zones, the more it helps to realize the effects of the
 selection policy. The results of the mechanism test show that the
 selection of NDZs has a positive impact on urban green innovation through
 environmental regulation effects, resource allocation effects, and policy
 amplification effects. Data on development zones are sourced from the
 China Directory of Development Zones Audit and Announcement (2006) and the
 China Directory of Development Zones Audit and Announcement (2018
 Edition)(http://www.gov.cn/xinwen/2018-03/03/content_5270330.htm); data on
 patents are sourced from the China Intellectual Property Office
 (https://www.cnipa.gov.cn/); Other city-level data from China City
 Statistical Yearbook, China Regional Economic Statistical Yearbook, China
 Statistical Yearbook
 (https://data.cnki.net/Yearbook/Navi?type=type&code=A). Our data
 is collated from the above sources using Python software.
DOI: 10.57903/uj/wn26lb
title: Growth Characteristics and Physicochemical Properties of Nanoporous Hafnium Oxide Layers Prepared by Anodic Oxidation of Hf - replication data

description: Purpose 1: To understand the role of anodization parameters/conditions on the morphology of anodic hafnium oxide layers, Purpose 2: To understand the rate limiting steps of anodic hafnium oxide growth under various potentiostatic conditions, Purpose 3: Complex physicochemical characterization of anodic hafnium oxide layers, Nature of the data set: .txt, .csv, .jpeg and .tif, Scope of the data set: To understand the results of this study, and may help to reproduce the results
DOI: 10.5061/dryad.wh70rxwqk
title: Human thymidylate synthase NMR relaxation data

description: Table of intensities of NMR signals of human thymidylate synthase in
 multiple bound forms from several NMR relaxation experiments. Bound forms
 studied include apo, dUMP (substrate) bound, TMP (product) bound, as well
 as apo and dUMP bound N-terminal truncation. Experiments include methyl
 13C MQ and SQ CPMG, CHD2 methyl 13C CEST, CHD2 methyl 2H R2, solvent PRE,
 backbone amide RDC, and 15N relaxation. Details of the data collection can
 be found in the associated publication.