cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16616353.v1
title: Supporting data for "A single-cell transcriptomic atlas tracking the neural basis of division of labor in an ant superorganism".

description: <strong>Files provided in this dataset:</strong>
1. <strong>M.Pharaonis.genome.fasta.gz </strong>: genome assembly of the pharaoh ant in fasta format.
2. <strong>M.pharaonis.genome.gtf.gz</strong> : gene annotations of the pharaoh ant genome in gene transfer format (GTF). 
3. <strong>M.pharaonis.cds.fasta.gz</strong> : coding sequences of genes of the pharaoh ant in fasta format. 
4. <strong>M.pharaonis.pep.fasta.gz</strong> : peptide sequences of genes of the pharaoh ant in fasta format.
5. <strong>M.pharaonis.gene.function.annotation.gz</strong> : functional annotations of all protein-coding genes of the pharaoh ant. 
6. <strong>Mpha.umi.geneMatrix.gz</strong> : the digital gene expression matrix (the number of UMIs per gene per nucleus) of the pharaoh ant.
7. <strong>Mpha.rds</strong>: analysis results of the 206,367 pharaoh ant single-nucleus transcriptomes generated by Seurat.
8. <strong>M.pharaonis.marker.genes.gz</strong> : marker genes for the 43 cell clusters identified in the pharaoh ant brains.
9. <strong>NCBI_CNSA_correspond_list </strong>: correspondence across NCBI accession, CNSA accession, library, biological replicate and adult phenotype for the raw sequencing data.
10. <strong>Amel.rds </strong>: analysis results of the honeybee single-cell transcriptome data (PMID: 32080242) generated by Seurat. 
11. <strong>Dmelmb.rds</strong> : analysis results of the fly midbrain single-cell transcriptome data (PMID: 29671739) generated by Seurat.
12. <strong>Dmelmb.glia.recluster.rds</strong> : analysis results of re-clustering the glial cells from Dmelmb.rds (PMID: 29671739) generated by Seurat.
13. <strong>scripts_for_data_analyses.tar.gz </strong>: in-house scripts.
14. <strong>Readme.txt</strong> : more detailed descriptions for each file.
DOI: 10.34740/kaggle/dsv/7282976
title: Stock Market DataSet
DOI: 10.6084/m9.figshare.19474316.v6
title: Fern Tree of Life (FTOL) input data

description: The data included here are used in a pipeline that (mostly) automatically generates a maximally sampled fern phylogenetic tree based on plastid sequences in GenBank (https://github.com/fernphy/ftol).<br>
<br>
The first step is to download the latest release of GenBank data from the NCBI GenBank FTP site (https://ftp.ncbi.nlm.nih.gov/genbank/) and use it to create a local database of fern sequences. This is done with custom R scripts contained in https://github.com/fernphy/ftol, in particular setup_gb.R (https://github.com/fernphy/ftol/blob/main/R/setup_gb.R).<br>
<br>
Next, a set of reference FASTA files for 79 target loci (one per locus; ref_aln.tar.gz) is generated. These include 77 protein-coding genes based on a list of 83 genes (Wei et al. 2017) that was filtered to only genes that show no evidence of duplication, plus two spacer regions (trnL-trnF and rps4-trnS). Each FASTA file in ref_aln.tar.gz includes one representative (longest) sequence per avaialable fern genus. This is done with prep_ref_seqs_plan.R (https://github.com/fernphy/ftol/blob/main/prep_ref_seqs_plan.R).<br>
<br>
Sequences matching the target loci are then extracted from each accession in the local database using the FASTA files contained in ref_aln.tar.gz as references with the “Reference_Blast_Extract.py” script of superCRUNCH (Portik and Wiens 2020).<br>
<br>
The extracted sequences are aligned with MAFFT (Katoh et al. 2002), phylogenetic analysis is done using IQ-TREE (Nguyen et al. 2015) and divergence times estimated with treePL (Smith and O’Meara 2012).<br>
<br>
For additional methodological details, see:<br>
<br>
Nitta JH, Schuettpelz E, Ramírez-Barahona S, Iwasaki W. 2022. An open and continuously updated fern tree of life. Frontiers in Plant Sciences 13 https://doi.org/10.3389/fpls.2022.909768.<br>
DOI: 10.6084/m9.figshare.24903312
title: <b>EBV</b><b> </b><b>Infection</b><b> </b><b>as</b><b> </b><b>a</b><b> </b><b>Risk</b><b> </b><b>Factor</b><b> </b><b>for</b><b> </b><b>SLE</b><b> </b><b>Development</b><b> </b><b>in</b><b> </b><b>Adult</b><b> </b><b>Sudanese</b><b> </b><b>Patients</b> study questionnaire dataset

description: Background: To evaluate EBV (Epstein Barr VirusEpstein–Barr virus (EBV) infection as a risk factor for the development of SLE (Systemic Lupus Erythematosussystemic lupus erythematosus (SLE) in Sudanese patients. This iswas a case controlcase‒control study. Forty-two SLE patients and forty-one age- and sex -matched controls were included. Demographic, clinical and laboratory data were collected. Venous blood samples were drawn, and EBV- viral capsid antigen (EBV-VCA) IgGsIgG titreer levels were quantitively measured. quantified. Demographic, clinical and laboratory data were compared between the two groups by either Student’s t- test or Man- Whitneythe Mann‒Whitney U test for continuous data, or by χ² analysis for categorical data. P values &lt; 0.05 were considered statistically significantto indicate statistical significance. Results: The SLE patients’ group hadpatients in the present study had a low mean Hb levelsconcentration (11.5 ± 1.7gm7 gm/dL) and a low RBCsRBC count (4.1 ± 0.73). Almost all patients (41, 97.6%) and controlcontrols (40, 97.6%) groups were positive for the VCA-IgG, (P=0.99). The titreer levels of the VCA-IgG between the two groups were similar (153.8± 58.2 RU/ml for patients, 156.6± 64.1 RU/ml for control groups,; p = 0.83). The mean EBV-VCA-IgG levels were similar inbetween the positive and negative anti-dsDNA patients, with a p value of 0.98. The mean VCA-IgG titreer means werewas also similar between anti-Sm -positive and anti-Sm-negative patients, (p= 0.22). Conclusions: No association was found between EBV infection and SLE development in adult Sudanese patients. LargerA larger sample size and younger population isare recommended to elucidate any association associations between EBV and SLE.
DOI: 10.6084/m9.figshare.24903312.v2
title: <b>EBV</b><b> </b><b>Infection</b><b> </b><b>as</b><b> </b><b>a</b><b> </b><b>Risk</b><b> </b><b>Factor</b><b> </b><b>for</b><b> </b><b>SLE</b><b> </b><b>Development</b><b> </b><b>in</b><b> </b><b>Adult</b><b> </b><b>Sudanese</b><b> </b><b>Patients</b> study questionnaire dataset

description: Background: To evaluate EBV (Epstein Barr VirusEpstein–Barr virus (EBV) infection as a risk factor for the development of SLE (Systemic Lupus Erythematosussystemic lupus erythematosus (SLE) in Sudanese patients. This iswas a case controlcase‒control study. Forty-two SLE patients and forty-one age- and sex -matched controls were included. Demographic, clinical and laboratory data were collected. Venous blood samples were drawn, and EBV- viral capsid antigen (EBV-VCA) IgGsIgG titreer levels were quantitively measured. quantified. Demographic, clinical and laboratory data were compared between the two groups by either Student’s t- test or Man- Whitneythe Mann‒Whitney U test for continuous data, or by χ² analysis for categorical data. P values &lt; 0.05 were considered statistically significantto indicate statistical significance. Results: The SLE patients’ group hadpatients in the present study had a low mean Hb levelsconcentration (11.5 ± 1.7gm7 gm/dL) and a low RBCsRBC count (4.1 ± 0.73). Almost all patients (41, 97.6%) and controlcontrols (40, 97.6%) groups were positive for the VCA-IgG, (P=0.99). The titreer levels of the VCA-IgG between the two groups were similar (153.8± 58.2 RU/ml for patients, 156.6± 64.1 RU/ml for control groups,; p = 0.83). The mean EBV-VCA-IgG levels were similar inbetween the positive and negative anti-dsDNA patients, with a p value of 0.98. The mean VCA-IgG titreer means werewas also similar between anti-Sm -positive and anti-Sm-negative patients, (p= 0.22). Conclusions: No association was found between EBV infection and SLE development in adult Sudanese patients. LargerA larger sample size and younger population isare recommended to elucidate any association associations between EBV and SLE.
DOI: 10.6084/m9.figshare.24903312.v1
title: <b>EBV</b><b> </b><b>Infection</b><b> </b><b>as</b><b> </b><b>a</b><b> </b><b>Risk</b><b> </b><b>Factor</b><b> </b><b>for</b><b> </b><b>SLE</b><b> </b><b>Development</b><b> </b><b>in</b><b> </b><b>Adult</b><b> </b><b>Sudanese</b><b> </b><b>Patients</b> study questionnaire dataset

description: Background: To evaluate EBV (Epstein Barr VirusEpstein–Barr virus (EBV) infection as a risk factor for the development of SLE (Systemic Lupus Erythematosussystemic lupus erythematosus (SLE) in Sudanese patients. This iswas a case controlcase‒control study. Forty-two SLE patients and forty-one age- and sex -matched controls were included. Demographic, clinical and laboratory data were collected. Venous blood samples were drawn, and EBV- viral capsid antigen (EBV-VCA) IgGsIgG titreer levels were quantitively measured. quantified. Demographic, clinical and laboratory data were compared between the two groups by either Student’s t- test or Man- Whitneythe Mann‒Whitney U test for continuous data, or by χ² analysis for categorical data. P values &lt; 0.05 were considered statistically significantto indicate statistical significance. Results: The SLE patients’ group hadpatients in the present study had a low mean Hb levelsconcentration (11.5 ± 1.7gm7 gm/dL) and a low RBCsRBC count (4.1 ± 0.73). Almost all patients (41, 97.6%) and controlcontrols (40, 97.6%) groups were positive for the VCA-IgG, (P=0.99). The titreer levels of the VCA-IgG between the two groups were similar (153.8± 58.2 RU/ml for patients, 156.6± 64.1 RU/ml for control groups,; p = 0.83). The mean EBV-VCA-IgG levels were similar inbetween the positive and negative anti-dsDNA patients, with a p value of 0.98. The mean VCA-IgG titreer means werewas also similar between anti-Sm -positive and anti-Sm-negative patients, (p= 0.22). Conclusions: No association was found between EBV infection and SLE development in adult Sudanese patients. LargerA larger sample size and younger population isare recommended to elucidate any association associations between EBV and SLE.
DOI: 10.25919/sj3f-hg50
title: Parkes observations for project P1226 semester 2023OCTS_14

description: Fast Radio Bursts(FRBs) are often proposed as useful cosmological probes, however much work is needed to better understand the foreground environment that it propgates through, such as the Galactic ISM and Milky Way Halo. We propose to observe three satellite dwarf spheroidal galaxies of the Milky Way to search for FRBs and pulsars. We plan to take advantage of the new CryoPAF's wide field of view to survey high stellar density dwarf satellite galaxies with substantial angular sizes: Fornax, Sculptor and Sagittarius II. Detections of FRBs and pulsars will allow us to measure the Circumgalactic Medium contribution to FRB dispersion and also the dark matter halos of these dwarf galaxies.
DOI: 10.18112/openneuro.ds004718.v1.0.4
title: Le Petit Prince Hong Kong: Naturalistic fMRI and EEG dataset from older Cantonese speakers
DOI: 10.6084/m9.figshare.24785997
title: Source Data

description: These data are the source data of "Selective and energy-efficient electrosynthesis of ethylene from CO<sub>2</sub> by tuning<br>the valence of Cu catalysts through aryl diazonium functionalization" manuscript in Nature Energy.
DOI: 10.57967/hf/1524
title: eidas
DOI: 10.25919/45ge-cf50
title: Parkes observations for project P1226 semester 2023OCTS_16

description: Fast Radio Bursts(FRBs) are often proposed as useful cosmological probes, however much work is needed to better understand the foreground environment that it propgates through, such as the Galactic ISM and Milky Way Halo. We propose to observe three satellite dwarf spheroidal galaxies of the Milky Way to search for FRBs and pulsars. We plan to take advantage of the new CryoPAF's wide field of view to survey high stellar density dwarf satellite galaxies with substantial angular sizes: Fornax, Sculptor and Sagittarius II. Detections of FRBs and pulsars will allow us to measure the Circumgalactic Medium contribution to FRB dispersion and also the dark matter halos of these dwarf galaxies.
DOI: 10.6084/m9.figshare.24903407
title: Table S1 from Assessment of DNA extraction methods for human gut mycobiome analysis

description: Taxa list
DOI: 10.6084/m9.figshare.24903407.v1
title: Table S1 from Assessment of DNA extraction methods for human gut mycobiome analysis

description: Taxa list
DOI: 10.4121/012fc1f6-4363-4521-8fc1-81e24f39b821
title: Dataset of a collection of motion profiles of an unmanned underwater vehicle moving in an underwater environment.

description: The dataset includes a collection of motion profiles of an Unmanned Underwater vehicle moving inan underwater environment.We operate an underwater robot that responds to diverse inputs in various degrees of freedom (roll, yaw, z-axis), and its actions are captured through video recordings. The movement of our underwater robot forms a dynamic system, and by defining appropriate inputs and outputs, we can conduct System Identification to construct a mathematical model. The robot exhibits coupled motion, necessitating the analysis of the MIMO (multiple input multiple output) version of our system in certain scenarios.While IMU sensors record output data, we address inaccuracies by utilizing external tools to obtain more precise output information and couple that with the control comments on terms of forces and torques.
DOI: 10.4121/012fc1f6-4363-4521-8fc1-81e24f39b821.v1
title: Dataset of a collection of motion profiles of an unmanned underwater vehicle moving in an underwater environment.

description: The dataset includes a collection of motion profiles of an Unmanned Underwater vehicle moving inan underwater environment.We operate an underwater robot that responds to diverse inputs in various degrees of freedom (roll, yaw, z-axis), and its actions are captured through video recordings. The movement of our underwater robot forms a dynamic system, and by defining appropriate inputs and outputs, we can conduct System Identification to construct a mathematical model. The robot exhibits coupled motion, necessitating the analysis of the MIMO (multiple input multiple output) version of our system in certain scenarios.While IMU sensors record output data, we address inaccuracies by utilizing external tools to obtain more precise output information and couple that with the control comments on terms of forces and torques.
DOI: 10.5281/zenodo.10057251
title: In silico hemodynamics of the computer-generated pulmonary atresia with intact ventricular septum patients

description: Attached files include the lumped parameter model inputs and simulated pre- and post-operative (Biventricular repair and Glenn) hemodynamics of the generated digital pulmonary atresia with intact ventricular septum patients twins, related to the manuscript entitled 'Computer-generated clinical decision-making in the treatment of pulmonary atresia with intact ventricular septum'.
DOI: 10.5281/zenodo.10432549
title: In silico hemodynamics of the computer-generated pulmonary atresia with intact ventricular septum patients

description: Attached files include the lumped parameter model inputs and simulated pre- and post-operative (Biventricular repair and Glenn) hemodynamics of the generated digital pulmonary atresia with intact ventricular septum patients twins, related to the manuscript entitled 'Computer-generated clinical decision-making in the treatment of pulmonary atresia with intact ventricular septum'.
DOI: 10.6084/m9.figshare.24903387
title: <b>A comprehensive dataset of photonic features on spectral converters in energy harvesting and conversion applications</b>

description: Literature review on Luminescent Solar Concentrator over the past 44 years from the Web of ScienceTM Core Collection, gathering the optical key performance index and identify the material classes that contribute to the performance.
DOI: 10.6084/m9.figshare.24903423
title: Study Dataset

description: All the raw data of the three studies datasets
DOI: 10.6084/m9.figshare.24903396
title: Efficacy of Solution Focused Brief Therapy and Problem-Solving Counselling in reducing psychological distress in patients who present to a tertiary hospital following Deliberate Self-Harm_Dataset_deidentified.sav

description: This study compared the efficacy of solution focused brief therapy and problem solving counselling in reducing the psychological distress of patients who presented following deliberate self harm to a tertiary hospital.
DOI: 10.6084/m9.figshare.24903396.v1
title: Efficacy of Solution Focused Brief Therapy and Problem-Solving Counselling in reducing psychological distress in patients who present to a tertiary hospital following Deliberate Self-Harm_Dataset_deidentified.sav

description: This study compared the efficacy of solution focused brief therapy and problem solving counselling in reducing the psychological distress of patients who presented following deliberate self harm to a tertiary hospital.
DOI: 10.34740/kaggle/dsv/7283555
title: 📒 Meta Kaggle ported to MS SQL SERVER 2022 DB
DOI: 10.5281/zenodo.10391043
title: Mesh dataset for the paper "Bending-Reinforced Grid Shells for Free-form Architectural Surfaces"

description: If using this dataset, please cite the paper: 

Laccone, F., Pietroni, N., Cignoni, P., Malomo, L.: Bending-Reinforced Grid Shells for Free-form Architectural Surfaces. Computer-Aided Design. Available online 23 December 2023, 103670.

https://doi.org/10.1016/j.cad.2023.103670
DOI: 10.5281/zenodo.10432580
title: Data of "Aerosol-cloud interactions near cloud base deteriorating the haze pollution in East China"

description: The attached data is observations from ground to 1200 m a.g.l. using a tethered airship in Yangtze Rive Delta of China. The data is for analysis and figures in the study of "Aerosol-cloud interactions near cloud base deteriorating the haze pollution in East China".
DOI: 10.5281/zenodo.10391042
title: Mesh dataset for the paper "Bending-Reinforced Grid Shells for Free-form Architectural Surfaces"

description: If using this dataset, please cite the paper: 

Laccone, F., Pietroni, N., Cignoni, P., Malomo, L.: Bending-Reinforced Grid Shells for Free-form Architectural Surfaces. Computer-Aided Design. Available online 23 December 2023, 103670.

https://doi.org/10.1016/j.cad.2023.103670
DOI: 10.34740/kaggle/dsv/7283639
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.60897/x48r-e929
title: NDACC stratospheric ozone LIDAR data from DWD Hohenpeissenberg station

description: The Hohenpeissenberg ozone DIAL measures stratospheric ozone profiles from about 15 to 50 km altitude (by differential absorption) and stratospheric temperature profiles from about 28 to 80 km altitude (by Rayleigh backscattering). An old system running since 1987 was supplemented by a new and improved system in 2016. Since January 2018, the new system provides the operational NDACC profiles. The lidar provides about 80 to 100 nightly mean profiles per year, on clear nights since September 1987. A XeCl Excimer laser produces light pulses at 308 nm that are absorbed by ozone. A tripled NdYAG laser produces light pulses at 355 nm, which are not absorbed by ozone. The backscattered light at 355 nm then provides the temperature profile. The backscattered and absorbed light at 308 nm provides the ozone profile. For more information on the lidar system see https://www-air.larc.nasa.gov/pub/NDACC/PUBLIC/meta/lidar/ . For information about stratospheric ozone and temperature at Hohenpeissenberg see https://www.dwd.de/ozon .
DOI: 10.6084/m9.figshare.24903465
title: Efficacy of Solution Focused Brief Therapy and Problem-Solving Counselling in reducing psychological distress in patients who present to a tertiary hospital following Deliberate Self-Harm_Data analysis

description: The efficacy of solution focused brief therapy and problem solving counselling in reducing the psychological distress of patients who presented with DSH was evaluated in this study.
DOI: 10.6084/m9.figshare.24903465.v1
title: Efficacy of Solution Focused Brief Therapy and Problem-Solving Counselling in reducing psychological distress in patients who present to a tertiary hospital following Deliberate Self-Harm_Data analysis

description: The efficacy of solution focused brief therapy and problem solving counselling in reducing the psychological distress of patients who presented with DSH was evaluated in this study.
DOI: 10.5281/zenodo.10418935
title: Data for paper "Detection of new pioneer transcription factors as cell-type specific nucleosome binders"
DOI: 10.5281/zenodo.10418936
title: Data for paper "Detection of new pioneer transcription factors as cell-type specific nucleosome binders"
DOI: 10.6084/m9.figshare.24460756
title: Supplementary Materials for “The submarine fault scarp of the 2011 Tohoku-oki Earthquake in the Japan Trench” by Ueda et al.

description: Supplementary_Data1_Dive_Track.xlsxThis is an Excel version of Supplementary Table 1, which lists on-bottom position data of the DSV Limiting Factor dive#123. Explanations for data acquisition is described in Supplementary Note 1 in the Supplementary Information .Supplementary_Data2_PD2022_MBES.grdThis file is a bathymetric grid data around the dive#123 site, formatted by GMT netCDF grid format (binary). The data were acquired by DSSV Pressure Drop in Sep. 2022, and used to draw the 2022 bathymetric map (Fig. 3a) and cross section (Fig. 3d). This file covers a region with longitudes ranging from 143°E to 144°E, and latitudes ranging from 38°N to 39°N. For information on data acquisition, please refer to the Method section of the main article. The file was generated by the nearneighbor command of GMT 6.4 with a grid interval (-I parameter) of 0.75 minute (=140 m) and a search radius (-R) of 0.25 km.Supplementary_Data3_ Fault-bend fold.xlsxThis Excel file contains a worksheet which calculated rotation of the surface slope and the underlying beds in response to change in the fault dip, following the kink geometry presented by Suppe (1983). The results were used to draw the balanced cross sections in Fug. 7 of the main article and Supplementary Figure 2. This spread sheet consists of two parts: Columns A to D (C1 to C4) on the left comprises a panel for calculation, methods of which are described in the worksheet. Columns E to N (C5 to C14) show the result of the calculation for the cases of varying dip angles of the thrust fault assuming 30°, 35°, 40°, and 45°. In each case, dip angles of the rotated surface slope and of the fold axial plane as a result of change in the fault dip angle were calculated sector by sector, and are shown in the green columns.Suppe, J. Geometry and kinematics of fault-bend folding. <i>American Journal of Science</i> <b>283</b>, 684–721 (1983).Supplementary_Data4_ Critical_Taper.xlsmThis Excel file contains two worksheets which calculated critical slope angles for the post-seismic and pre-seismic wedge geometry. It was used to draw Supplementary Figure 4 and to assume the frictional properties shown in Supplementary Table 4. Note that this file contains in-house macro program coded by Visual Basic Application to execute calculations following Dahlen (1984). The codes can be seen using Visual Basic Editor embedded in the Excel software. Results of sector-by-sector critical slope angles are listed in a small table on the right in each worksheet. The post-seismic worksheet also shows rotation of surface slope angles in response to change in the decollement dip. The rotation was calculated as the same way with Supplementary File 2.Dahlen, F. A. Noncohesive critical Coulomb wedges: An exact solution. <i>Journal of Geophysical Research</i> <b>89</b>, 10125-10133 (1984).Ueda_etal_Japan_Trench_Supplementary_Information.pdfThis is the same file as that provided from the journal site as the Supplementary Information.
DOI: 10.5281/zenodo.10432645
title: Instances for the Hampered k-Median Problem with Neighbourhoods

description: This repository contains the instances used for studying the Hampered k-Median Problem with Neighborhoods (KMPN). The instances are saved in .csv format. For each folder, a README.txt is included to load the instances to include to the model.