cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.gp126fv
title: Data from: Pattern of polyphenol intake and the long-term risk of dementia in older persons

description: Objective: To investigate the optimal combination of dietary polyphenols
 associated with the long-term risk of dementia in a large prospective
 French cohort of older persons, the Three-City (3C) Study. Methods: We
 included 1,329 non-demented older adults from the 3C Study with assessment
 of intake of 26 polyphenol subclasses and followed for 12 years for
 dementia. Using Partial Least Square for Cox models, we identified a
 pattern of polyphenol intake associated with dementia risk. Results: The
 pattern combined several flavonoids (dihydroflavonols, anthocyanins,
 isoflavonoids, flavanones), stilbenes (including resveratrol), lignans and
 other subclasses (hydroxybenzaldehydes, naphtoquinones, furanocoumarins).
 Compared with participants in the lower quintile of pattern score, those
 in the higher quintile had a 50% lower risk of dementia (95% CI 20%; 68%,
 p-trend &lt;0.01) in multivariate models. Conclusions: In this French
 cohort, a polyphenol pattern provided by a diet containing specific plant
 products (nuts, citrus, berries, leafy vegetables, soy, cereals, olive
 oil) accompanied with red wine and tea was associated with lower dementia
 risk.
description: (Dryad
 Appendix)(Dryad Figure 1, Table
 1-3)
DOI: 10.5061/dryad.5j501
title: Data from: Plio-Pleistocene phylogeography of the Southeast Asian Blue Panchax killifish, Aplocheilus panchax

description: The complex climatic and geological history of Southeast Asia has shaped
 this region’s high biodiversity. In particular, sea level fluctuations
 associated with repeated glacial cycles during the Pleistocene both
 facilitated, and limited, connectivity between populations. In this study,
 we used data from two mitochondrial and three anonymous nuclear markers to
 determine whether a fresh/brackish water killifish, Aplocheilus panchax,
 Hamilton, 1822, could be used to further understand how climatic
 oscillations and associated sea level fluctuations have shaped the
 distribution of biota within this region, and whether such patterns show
 evidence of isolation within palaeodrainage basins. Our analyses revealed
 three major mitochondrial clades within A. panchax. The basal divergence
 of A. panchax mitochondrial lineages was approximately 3.5 Ma, whilst the
 subsequent divergence timings of these clades occurred early Pleistocene
 (~2.6 Ma), proceeding through the Pleistocene. Continuous phylogeographic
 analysis showed a clear west-east dispersal followed by rapid radiation
 across Southeast Asia. Individuals from Krabi, just north of the Isthmus
 of Kra, were more closely related to the Indian lineages, providing
 further evidence for a freshwater faunal disjunction at the Isthmus of Kra
 biogeographic barrier. Our results suggest that Sulawesi, across the
 Wallace Line, was colonised relatively recently (~30 ka). Nuclear DNA is
 less geographically structured, although Mantel tests indicated that
 nuclear genetic distances were correlated with geographic proximity.
 Overall, these results imply that recent gene flow, as opposed to
 historical isolation, has been the key factor determining patterns of
 nuclear genetic variation in A. panchax, however, some evidence of
 historical isolation is retained within the mitochondrial genome. Our
 study further validates the existence of a major biogeographic boundary at
 the Kra Isthmus, and also demonstrates the use of widely distributed
 fresh/brackishwater species in phylogeographic studies, and their ability
 to disperse across major marine barriers in relatively recent time
 periods.
description: AP44Anonymous nuclear
 marker, AP44, sequencesAP50Anonymous nuclear
 marker, AP50, sequencesAP70Anonymous nuclear
 marker, AP70, sequencesCOICOI mitochondrial
 sequencesCRCR mitochondrial
 sequencesAP44_phasePost-PHASE nuclear sequences for AP44AP50_phasePost-PHASE nuclear sequences for AP50AP70_phasePost-PHASE nuclear sequences for AP70
DOI: 10.5061/dryad.5cd3m
title: Data from: Going undercover: increasing canopy cover around a host tree drives associational resistance to an insect pest

description: Neighbouring heterospecific plants are often observed to reduce the
 probability of herbivore attack on a given focal plant. While this pattern
 of associational resistance is frequently reported, experimental evidence
 for underlying mechanisms is rare particularly for potential plant species
 diversity effects on focal host plants and their physical environment.
 Here, we used an established forest diversity experiment to determine
 whether tree diversity effects on an important insect pest are driven by
 concomitant changes in host tree growth or the light environment. We
 examined the effects of tree species richness, canopy cover and tree
 growth on the probability of occurrence, the abundance, and volume of
 galls caused by the pineapple gall adelgid Adelges abietis on Norway
 spruce. Although tree diversity had no effect on gall abundance, we
 observed that both the probability of gall presence and gall volume (an
 indicator of maternal fecundity) decreased with tree species richness and
 canopy cover around host spruce trees. Structural equation models revealed
 that effects of tree species richness on gall presence and volume were
 mediated by concurrent increases in canopy cover rather than changes in
 tree growth or host tree density. As canopy cover did not influence tree
 or shoot growth, patterns of associational resistance appear to be driven
 by improved host tree quality or more favourable microclimatic conditions
 in monocultures compared to mixed-stands. Our study therefore demonstrates
 that changes in forest structure may be critical to understanding the
 responses of herbivores to plant diversity and may underpin associational
 effects in forest ecosystems.
description: Muiruri &
 Koricheva_Oikos 2016_ Dryad Data
DOI: 10.5281/zenodo.13821766
title: Table 1 in Cryptops (Trigonocryptops) didi sp. n. (Chilopoda: Scolopendromorpha: Cryptopidae): expanding the cryptopid biodiversity in a Brazilian hotspot of subterranean fauna

description: Table 1. Diagnostic characters of three species of Brazilian Cryptops considered in this study.
Cryptops (T.) iheringiC. (C.) iporangensisCryptops (T.) didi sp. n.AntennaeExtend to tergite 3; 13–15 articlesExtend to tergite 6; 17 articlesExtend to tergite 8; 17 articlesSutures in first antennal articleIrregular, proximal/ventral, extend to dorsal aspect of the articleSuture proximal/ventral, inverted YIrregular, proximal/ventral, extend to dorsal aspect of the articleForcipular coxosterniteConvex on each side, row of bristles 13 + 13 Median suture extends to 1/2 of the coxosternumConvex on each side, row of 7 + 7 marginal bristlesConvex on each side, with a row of 9 + 9 marginal bristles, Median longitudinal suture extending to 1/3 of the coxosternumSutures in tergite 1Anterior transverse suture, W-shaped suture, and lateral suturesAnterior transverse sutureAnterior transverse suture; lateral and posterior sutures that connect to the paramedian suturesParamedian suturesComplete on tergites 1–20, lateral grooves 5–18Incomplete on tergites 2–19Complete on tergites 1–20Anterior oblique suturesPresent on tergites 3–8AbsentPresent on tergites 3–5Trigonal sutures on sternitesPresent on sternites 4–15AbsentPresent at sternites 4–6Ultimate legsNo distal spinose processes; 12(13) + 4(5) saw teethA pair of distal spinose processes on the prefemur, femur, and tibia; 10 + 5 saw teethA pair of distal spinose processes on the prefemur, femur, and tibia; 19 + 7 or 3 + 21 + 8 saw teeth
description: Published as part of Borges, Diva Maria, Bichuette, Maria Elina & Chagas-Jr, Amazonas, 2024, Cryptops (Trigonocryptops) didi sp. n. (Chilopoda: Scolopendromorpha: Cryptopidae): expanding the cryptopid biodiversity in a Brazilian hotspot of subterranean fauna, pp. 1313 in Journal of Natural History 58 (33 - 36) on page 1313, DOI: 10.1080/00222933.2024.2373469, http://zenodo.org/record/13758363
DOI: 10.5281/zenodo.13821767
title: Table 1 in Cryptops (Trigonocryptops) didi sp. n. (Chilopoda: Scolopendromorpha: Cryptopidae): expanding the cryptopid biodiversity in a Brazilian hotspot of subterranean fauna

description: Table 1. Diagnostic characters of three species of Brazilian Cryptops considered in this study.
Cryptops (T.) iheringiC. (C.) iporangensisCryptops (T.) didi sp. n.AntennaeExtend to tergite 3; 13–15 articlesExtend to tergite 6; 17 articlesExtend to tergite 8; 17 articlesSutures in first antennal articleIrregular, proximal/ventral, extend to dorsal aspect of the articleSuture proximal/ventral, inverted YIrregular, proximal/ventral, extend to dorsal aspect of the articleForcipular coxosterniteConvex on each side, row of bristles 13 + 13 Median suture extends to 1/2 of the coxosternumConvex on each side, row of 7 + 7 marginal bristlesConvex on each side, with a row of 9 + 9 marginal bristles, Median longitudinal suture extending to 1/3 of the coxosternumSutures in tergite 1Anterior transverse suture, W-shaped suture, and lateral suturesAnterior transverse sutureAnterior transverse suture; lateral and posterior sutures that connect to the paramedian suturesParamedian suturesComplete on tergites 1–20, lateral grooves 5–18Incomplete on tergites 2–19Complete on tergites 1–20Anterior oblique suturesPresent on tergites 3–8AbsentPresent on tergites 3–5Trigonal sutures on sternitesPresent on sternites 4–15AbsentPresent at sternites 4–6Ultimate legsNo distal spinose processes; 12(13) + 4(5) saw teethA pair of distal spinose processes on the prefemur, femur, and tibia; 10 + 5 saw teethA pair of distal spinose processes on the prefemur, femur, and tibia; 19 + 7 or 3 + 21 + 8 saw teeth
description: Published as part of Borges, Diva Maria, Bichuette, Maria Elina & Chagas-Jr, Amazonas, 2024, Cryptops (Trigonocryptops) didi sp. n. (Chilopoda: Scolopendromorpha: Cryptopidae): expanding the cryptopid biodiversity in a Brazilian hotspot of subterranean fauna, pp. 1313 in Journal of Natural History 58 (33 - 36) on page 1313, DOI: 10.1080/00222933.2024.2373469, http://zenodo.org/record/13758363
DOI: 10.5061/dryad.mv789q6
title: Data from: Structural modification of isomorphous SO42−-doped K2FeO4 for remediating the stability and enhancing the discharge of super-iron battery

description: In the paper, the isomorphous SO42- doped K2FeO4, aimed at the remediation
 of the discharge and stability of the super-iron battery, was first
 synthesized for doping and reforming the K2FeO4 crystalline structure via
 a facile coprecipitation and mechanochemistry. Afterward, the compared
 cathodes were assembled by the undoped and doped K2FeO4 for an evaluation
 of the discharge and stability in the AAA super-iron battery system. The
 results show that the small amounts of K2SO4 were doped into the K2FeO4 in
 the calculated form of K2Fe1-xSxO4 by the isomorphous substitution. The
 doped K2FeO4 cathodes/batteries exhibited an excellent discharge with a
 normal discharge profile. The cathodes doped by two techniques had
 significantly enhanced the discharge capacity of the super-iron battery
 with an increase of 10-30% compared to the undoped K2FeO4. Moreover, the
 stability of the K2FeO4 cathodes was obviously remediated by the
 isomorphous SO42- doping. The shelf time of the doped K2FeO4 cathodes was
 prolonged by an increase of about 10% in comparison of the undoped K2FeO4
 cathode. The desirable enhancements could be attributed to doping and
 reforming the similar building block and isomorphous SO42- into the FeO42-
 tetrahedral and crystalline in the form of the isomorphous substitution
 and filling vacancies.
description: Data for the
 figures
DOI: 10.5061/dryad.n720d
title: Data from: Sockeye salmon repatriation leads to population re-establishment and rapid introgression with native kokanee

description: Re-establishing salmonid populations to areas historically occupied has
 substantial potential for conservation gains, however, such interventions
 also risk negatively impacting native resident stocks. Here, we assessed
 the success of the hatchery-assisted reintroduction of anadromous sockeye
 salmon (Oncorhynchus nerka) into Skaha Lake, British Columbia, Canada, and
 evaluated the genetic consequences for native kokanee, a
 freshwater-obligate ecotype, using single nucleotide polymorphism
 genotypic data collected from reference samples of spawning Okanagan River
 sockeye and Skaha Lake kokanee pre-sockeye reintroduction, along with
 annual trawl survey and angler-caught samples obtained over an eight-year
 period. Significant differentiation was detected between sockeye and
 kokanee reference samples, with &gt;99% stock assignment. Low
 proportions of sockeye and hybrids were detected within 2008 and 2010
 age-0 trawl samples, however, by 2012, 28% were sockeye, rising to 41% in
 2014. The number of hybrids detected rose proportionally with the increase
 in sockeye, and exhibited an intermediate phenotype. Our results indicate
 that reintroduction of anadromous sockeye to Skaha Lake is succeeding,
 with large numbers returning to spawn. However, hybridization with native
 kokanee is of concern due to the potential for demographic or genetic
 swamping, with on-going genetic monitoring necessary to assess the
 long-term effects of introgression and to support interactive fisheries
 management.
description: Veale_Russello_EVA_SNPdataSNP genotypic data in GENEPOP format.
DOI: 10.15468/dl.ubjfzb
title: Occurrence Download

description: A dataset containing 7756181 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Germany",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year 2024-2026"
 ]
}

 The dataset includes 7756181 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000670-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.389mt
title: Data from: Fungal disease incidence along tree diversity gradients depends on latitude in European forests

description: European forests host a diversity of tree species that are increasingly
 threatened by fungal pathogens, which may have cascading consequences for
 forest ecosystems and their functioning. Previous experimental studies
 suggest that foliar and root pathogen abundance and disease severity
 decrease with increasing tree species diversity, but evidences from
 natural forests are rare. Here, we tested whether foliar fungal disease
 incidence was negatively affected by tree species diversity in different
 forest types across Europe. We measured the foliar fungal disease
 incidence on 16 different tree species in 209 plots in six European
 countries, representing a forest-type gradient from the Mediterranean to
 boreal forests. Forest plots of single species (monoculture plots) and
 those with different combinations of two to five tree species (mixed
 species plots) were compared. Specifically, we analyzed the influence of
 tree species richness, functional type (conifer vs. broadleaved) and
 phylogenetic diversity on overall fungal disease incidence. The effect of
 tree species richness on disease incidence varied with latitude and
 functional type. Disease incidence tended to increase with tree diversity,
 in particular in northern latitudes. Disease incidence decreased with tree
 species richness in conifers, but not in broadleaved trees. However, for
 specific damage symptoms, no tree species richness effects were observed.
 Although the patterns were weak, susceptibility of forests to disease
 appears to depend on the forest site and tree type.
description: Foliar fungal pathogen
 data for FunDivEUROPENguyen_FungalPathogen_EcolEvol2.csv
DOI: 10.5061/dryad.b321hf1
title: Data from: Evidence for sexual conflict over MHC diversity in a wild songbird

description: Sex differences in parasite load and immune responses are found across a
 wide range of animals, with females generally having lower parasite loads
 and stronger immune responses than males. Intrigued by these general
 patterns, we investigated if there was any sign of sex-specific selection
 on an essential component of adaptive immunity that is known to affect
 fitness, the major histocompatibility complex class I (MHC-I) genes, in a
 20-year study of great reed warblers. Our analyses on fitness related to
 MHC-I diversity showed a highly significant interaction between MHC-I
 diversity and sex, where males with higher, and females with lower, MHC-I
 diversity were more successful in recruiting offspring. Importantly, mean
 MHC-I diversity did not differ between males and females, and consequently
 neither sex reached its MHC-I fitness optimum. Thus, there is an
 unresolved genetic sexual conflict over MHC-I diversity in great reed
 warblers. Selection from pathogens is known to maintain MHC diversity, but
 previous theory ignores that the immune environments are considerably
 different in males and females. Our results suggest that sexually
 antagonistic selection is an important, previously neglected, force in the
 evolution of vertebrate adaptive immunity, and have implications for
 evolutionary understanding of costs of immune responses and autoimmune
 diseases.
description: Suppl_data_tables_20180412This is data from the great reed warbler population in Lake Kvismaren in South Central Sweden. It includes data on the life history and fitness, as well as MHC class I exon 3 genotyping data of a number of adult individuals observed in the years 1986-2003 and offspring from the 1998 cohort. The authors kindly request to be contacted if any of this data is used for scientific publication.MHC_I_sequences_JR_20180413Fasta file with MHC class I exon 3 sequences from the great reed warbler population in Lake Kvismaren, South Central Sweden. The authors kindly request to be contacted if any of this data is used for scientific publication.
DOI: 10.5061/dryad.2vj5h
title: Data from: Molecular mapping and candidate gene analysis for numerous spines on the fruit of cucumber

description: Number of spines on the fruit is an important quality trait in cucumber.
 The inheritance and identification of molecular markers for fruit spine
 density gene can provide a basis for breeding and lay the foundation for
 gene cloning. Cucumber inbred lines NCG-122 with numerous spines and
 NCG-121 with few spines were used for genetic analysis and gene mapping in
 this study. Genetic analysis showed that the numerous spines trait in
 NCG-122 was qualitative, and a single recessive nuclear gene (ns)
 controlled this trait. The few spines trait was dominant over the numerous
 spines trait. In the preliminary genetic mapping of the ns gene, 8 SSR
 markers were found to be linked to ns, which mapped to chromosome 2
 (Chr.2) of cucumber. The closest flanking markers SSR22338 and SSR11596
 were linked to the ns gene, with genetic distances of 10.2 and 1.7cM,
 respectively. One-hundred and thirty pairs of new SSR primers and 28 pairs
 of Indel primers were developed based on sequence information in the
 preliminary mapping region of ns. Fifteen SSR markers and 2 Indel markers
 were identified to be linked to the ns gene after analysis on the F2
 mapping population using the new molecular markers. The 2 closest flanking
 markers, SSRns-127 and SSR04219, were 0.7 and 2.4 cM from ns,
 respectively. The physical distance between SSRns-127 and SSR04219 was
 266.1kb, containing 27 predicted genes. Csa2G285390 was speculated as the
 probable candidate gene for numerous spines. The accuracy of the closest
 linked marker to the ns gene, SSRns-127, for MAS breeding was 95.0%.
description: Data for the ns gene
 mappingThe information of
 molecular markers and candidate genes were listed in Table 1 and Table 3.
 Table 2 was the validity results of the SSRns-127 marker for MAS breeding.
 The pictures in Figure 1 showed the phenotypes of parental lines. Figure 2
 was the genetic map of the ns gene.
DOI: 10.5061/dryad.v67vj41
title: Data from: Oligocene–Neogene fossil history of Asian endemic conifer genera in Japan and Korea

description: Temporal and spatial changes of ten conifer genera that are endemic to
 East Asia were analyzed based on fossil data from humid temperate forests
 in the Japanese Islands and Korean Peninsula to elucidate the
 phytogeographic history, and to understand differences between those
 genera eliminated from the Japanese Islands and those remained extant. All
 these genera, except for Thujopsis, have existed in the area since the
 Paleogene and remained in the Japanese islands after initial separation
 from the continent at the early–middle Miocene. Those locally extinct six
 genera have tendencies to adapt to wider ranges of climatic conditions
 than their modern relatives. Metasequoia, Glyptostrobus, and Taiwania
 began to change their distributions since the late Miocene possibly
 through habitat partitioning. Keteleeria, Pseudolarix, and Cunninghamia
 appeared to have expanded their habitat toward warmer conditions during
 the mid-Miocene Climatic Optimum and then became restricted to warmer
 forest vegetation by the end of Pliocene. Overall changes in their
 distribution can be explained by climatic effects. On the contrary, three
 genera endemic to Japan (Sciadopitys, Cryptomeria, and Thujopsis) followed
 clearly different trends from the others. Cryptomeria and Thujopsis were
 especially adapted to cooler-temperate climate and they retained their
 habitat areas in the northern part of Japan. During the late
 Miocene–Pliocene, the islands connected with the Eurasian continent again,
 which probably acted as a corridor for warm-adapted genera to disperse
 southwest. Current data suggest that ecological requirements of each genus
 might be essential to decide whether they could survive on the Japanese
 Islands.
description: S1.occurrence_data_of_fossil_speciesLocation, age, and associated forest types for each fossil species used in Figure 2 of this work.S2.bibliographic_source_of_fossil_dataBibliographic source of fossil data used in Figure 2 and S1 of this work.
DOI: 10.17611/dp/16772136
title: Surface-Wave Radiation Patterns for May 06, 2007 MW 6.5 FIJI ISLANDS REGION
DOI: 10.17611/dp/16772166
title: Surface-Wave Radiation Patterns for May 06, 2007 MW 6.0 FIJI ISLANDS REGION
DOI: 10.17611/dp/16772196
title: Surface-Wave Radiation Patterns for May 07, 2007 MW 6.0 OFF COAST OF SOUTHERN CHILE
DOI: 10.17611/dp/16772226
title: Surface-Wave Radiation Patterns for May 16, 2007 MW 6.3 LAOS
DOI: 10.17611/dp/16772256
title: Surface-Wave Radiation Patterns for May 29, 2007 MW 6.1 NEW BRITAIN REGION, P.N.G.
DOI: 10.17611/dp/16772286
title: Surface-Wave Radiation Patterns for May 29, 2007 MW 6.0 HALMAHERA, INDONESIA
DOI: 10.17611/dp/16772316
title: Surface-Wave Radiation Patterns for June 02, 2007 MW 6.1 YUNNAN, CHINA
DOI: 10.17611/dp/16772346
title: Surface-Wave Radiation Patterns for June 13, 2007 MW 6.7 NEAR COAST OF GUATEMALA
DOI: 10.17611/dp/16772376
title: Surface-Wave Radiation Patterns for June 18, 2007 MW 6.3 NEW IRELAND REGION, P.N.G.
DOI: 10.17611/dp/16772406
title: Surface-Wave Radiation Patterns for June 24, 2007 MW 6.5 BOUVET ISLAND REGION
DOI: 10.17611/dp/16772436
title: Surface-Wave Radiation Patterns for June 26, 2007 MW 6.0 SOUTH OF JAVA, INDONESIA
DOI: 10.17611/dp/16772466
title: Surface-Wave Radiation Patterns for June 28, 2007 MW 6.7 SOLOMON ISLANDS
DOI: 10.17611/dp/16772496
title: Surface-Wave Radiation Patterns for July 06, 2007 MW 6.0 CHIAPAS, MEXICO
DOI: 10.17611/dp/16772526
title: Surface-Wave Radiation Patterns for July 12, 2007 MW 6.1 PERU-BRAZIL BORDER REGION