cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12077898.v1
title: Supp 1 Search strategy for turmeric

description: Search strategy doc.
DOI: 10.6084/m9.figshare.21103720.v1
title: Dataset Cancer

description: <em>Breast cancer</em> is a disease in which cells in the breast grow out of control. There are different kinds of breast cancer. The kind of breast cancer depends on which cells in the breast turn into cancer. Breast cancer can begin in different parts of the breast. A breast is made up of three main parts: lobules, ducts, and connective tissue. The lobules are the glands that produce milk. The ducts are tubes that carry milk to the nipple. The connective tissue (which consists of fibrous and fatty tissue) surrounds and holds everything together. Most breast cancers begin in the ducts or lobules. Breast cancer can spread outside the breast through blood vessels and lymph vessels. When breast cancer spreads to other parts of the body, it is said to have metastasized.
DOI: 10.6084/m9.figshare.22766261.v1
title: Data Set and R Code for Seed & Stratification Experiment

description: Data files and R code for the seed and stratification experiment
DOI: 10.17632/j534rd645s
title: Supplemental Material: A Retrospective, Cross-Sectional Analysis of Gender and Racial/Ethnic Diversity Trends in Dermatology Chairs

description: Supplementary methods, table, and figures for the research letter published in JAAD titled "A Retrospective, Cross-Sectional Analysis of Gender and Racial/Ethnic Diversity Trends in Dermatology Chairs."
DOI: 10.6084/m9.figshare.20079476.v1
title: Supplementary Material for: ICOS-positive regulatory T cells in hepatocellular carcinoma: the perspective from digital pathology analysis

description: Introduction: Inducible co-stimulator (ICOS), an important co-stimulatory receptors on effector T cells (Teffs), may also contribute to tumor growth due to its high expression on regulatory T cells (Tregs). This study explored the clinical significance of ICOS-expressing Tregs in hepatocellular carcinoma (HCC). Methods: Tumor tissues from HCC patients who received curative hepatectomy were obtained at a referral center. Dual immunohistochemistry was performed to evaluate the expression of ICOS and Foxp3. The cell densities and proximities between stained cells in regions of interest were measured by digital pathology and the associations with clinical outcome were analyzed. Results: A total of 142 patients (male: female= 112: 30, median age of 61.0 years) were enrolled. Among them, 87 (61.3%) had chronic hepatitis B virus infection and 33 (23.2%) had chronic hepatitis C infection. Low AFP level (&lt;20 ng/ml) and early-stage were significantly associated with improved overall survival (OS). The density of ICOS＋Foxp3＋ cells and the ratio of ICOS+Foxp3+/total Foxp3+ cells were significantly higher (p&lt;0.001) in the tumor center than in the peritumor area. Patients with a high density of ICOS＋Foxp3＋ cells or a high ratio of ICOS+Foxp3+/total Foxp3+ cells in the tumor center trended to have a shorter OS. A shorter distance between ICOS＋Foxp3＋ cells and ICOS＋Foxp3－ cells (likely Teffs) in the tumor center was significantly associated with a shorter OS (p=0.030), suggesting active immunosuppression of ICOS＋ Tregs on ICOS＋ Teffs. Conclusion: An increased abundance of ICOS＋ Tregs in the tumor center in comparison to the peritumor area indicates a strong immunosuppressive tumor microenvironment of HCC. A high proportion of ICOS+Foxp3+ cells and a shorter distance between ICOS+ Tregs and other ICOS+ cells were associated with a poor OS, suggesting that depleting ICOS+ Tregs might provide clinical benefit for patients with HCC.
DOI: 10.6084/m9.figshare.26117794.v1
title: Weibo texts on heavy rain and floods from 2012 to 2023

description: This is a text data downloaded from Sina Weibo related to flood disasters.
DOI: 10.6084/m9.figshare.3122170.v1
title: SMILES to CID mappings for the MMV Pathogen Box

description: MMV Pathogen Box SMILES to PubChem CID mapping (see blogpost in link)<br>
DOI: 10.6084/m9.figshare.6839981.v1
title: Aerobactin/salmochelin representative virulence plasmids

description: These 12 representative plasmids carry distinct lineages of the virulence-associated aerobactin and/or salmochelin biosynthesis loci in <i>K. pneumoniae</i>.Included in this folder are the individual annotated gbk files for each representative plasmid and the Mauve alignment files for the 12 plasmids. For more information and accession numbers for these genomes, please see bioRxiv preprint.
DOI: 10.6084/m9.figshare.8275283.v1
title: Supplementary Material for: Contemporary Trends in Clinical Outcomes among Dialysis Patients with Medicare Coverage

description: <b><i>Background:</i></b> The dialysis patient population in the United States continues to grow. Trends in rates of death and hospitalization among dialysis patients have important consequences for outpatient dialysis capacity and Medicare spending. <b><i>Objectives:</i></b> To estimate contemporary trends in rates of death and hospitalization among dialysis patients in the United States, overall and within subgroups. <b><i>Methods:</i></b> We used Medicare Limited Data Sets (100% sample) in 2014–2017 to estimate trends in rates of death and hospitalization among dialysis patients with Medicare Parts A and B enrollment. We used seasonal autoregressive integrated moving average models to identify secular trends in the incidence of outcomes. <b><i>Results:</i></b> There were 631,075 unique patients; 222,924 deaths; and 1,876,779 hospital admissions. Weekly risks of both death and hospitalization exhibited strong seasonality. However, overall weekly risks of death were 34.9, 35.4, 35.2, and 35.7 deaths per 10,000 patients in 2014–2017, respectively (<i>p</i> = 0.47, from a likelihood ratio test of secular trend). The overall weekly risk of hospitalization was 3.08, 3.05, 3.11, and 3.11% in 2014, 2015, 2016, and 2017, respectively (<i>p</i> = 0.30). There were significant secular trends in risk of death in subgroups defined by black race and residency in South Atlantic states (<i>p</i> &lt; 0.05). There were also secular trends in risk of hospitalization in subgroups defined by age 20–44 years, concurrent enrollment in Medicaid, and residency in South Central states. <b><i>Conclusion:</i></b> For the first time since the beginning of this century, rates of both death and hospitalization among dialysis patients with Medicare fee-for-service coverage have stagnated. The reasons for this change are unknown and require detailed assessment. Persistent lack of change in clinical outcomes may alter the future expectations about dialysis patient population growth.
DOI: 10.17632/7v728yymmk
title: Speech Driven Gaze in a Face-to-Face Interaction

description: It involves raw data and preprocessed files used for statistical analysis and the training of computational models. Please see the readme.txt files under each folder to get further information about the files inside that folder.
DOI: 10.17632/8g3s8f9n2p
title: INSPIRED: Inelastic neutron scattering prediction for instantaneous results and experimental design

description: Inelastic neutron scattering (INS) has unique advantages in probing how atoms vibrate and how the vibrations propagate and interact. Such dynamic information is crucial in understanding various material properties, from heat capacity, thermal conductivity, phase transitions, and chemical reactions to more exotic quantum behavior. The analysis and interpretation of the INS spectra often start from a model structure of the sample, followed by a series of calculations to obtain the simulated spectra to compare with experiments. The conventional way to perform such calculations usually requires significant time, computing resources, and specialized expertise. Here, we present a new program named INSPIRED (Inelastic Neutron Scattering Prediction for Instantaneous Results and Experimental Design), which enables users to perform rapid INS simulations in several different ways on their personal computers in just a few clicks, with the crystal structure as the only input file. Specifically, the users can choose a pre-trained symmetry-aware neural network (coupled with an autoencoder) to predict the phonon density of states (DOS), 1D S(E) and 2D S(|Q|,E) spectra for any given structure. One can also choose an existing density functional theory (DFT) calculation from a database (containing over 12,000 crystals), and quickly obtain the simulated INS spectra for single crystals and powders. It is also possible to use pre-trained universal machine learning force fields to relax a given crystal structure, calculate the phonon dispersion and DOS, and, subsequently, the INS spectra. All these functions are implemented with a PyQt graphic user interface. We expect these new tools will benefit broad user communities and significantly improve the efficiency of experiment design, execution, and data analysis for INS.
DOI: 10.17632/pw77wmhss9
title: Complementary gene regulation by NRF1 and NRF2 protect against hepatic cholesterol overload

description: Hepatic cholesterol overload promotes steatohepatitis. Insufficient understanding of liver stress defense impedes therapy development. Here, we elucidate the role of stress defense transcription factors, nuclear factor erythroid 2 related factor-1 (NRF1) and -2 (NRF2), in counteracting cholesterol-linked liver stress. Using diet that increase liver cholesterol storage, expression profiles and phenotypes of liver from mice with hepatocyte deficiency of NRF1, NRF2, or both are compared to controls and chromatin immunoprecipitation sequencing is undertaken to identify target genes. Results show NRF1 and NRF2 co-regulate genes that eliminate cholesterol and mitigate inflammation and oxidative damage. Combined deficiency, but not deficiency of either alone, results in severe steatohepatitis, hepatic cholesterol overload and crystallization, altered bile acid metabolism, and decreased biliary cholesterol. Moreover, therapeutic effects of NRF2-activating drug bardoxolone require NRF1 and are supplemented by NRF1 overexpression. Thus, we discover complementary gene programming by NRF1 and NRF2 that counteract cholesterol-associated fatty liver disease progression.
DOI: 10.17632/yjcv23t98b
title: Preliminary Taxonomy of COVID-19 Public Health Guidance and Associated Files

description: This dataset contains the following resources: 1. A taxonomy of public health guidance documents in Excel and SKOS formats: the taxonomy contains 100 branches, and was derived from documents gathered from the public health departments of Florida, Illinois, Massachusetts, Utah and the CDC. Methods used to collect guidance documents are described in a forthcoming publication (citation pending acceptance). The top level of the taxonomy divides branches between three domains: topic, stakeholder and setting. 2. A spreadsheet of all documents sampled to produce the taxonomy. 3. A set of freely available scripts for Apple Automator that were used to collect documents and extract URLs from them.
DOI: 10.6084/m9.figshare.21422514.v1
title: Factors Contributing to Moral Distress Among Intensive Care Nurses: A Scoping Review

description: DAS : <strong>Factors contributing to moral distress among intensive care nurses: A scoping review</strong>
DOI: 10.17632/8kptw2k475
title: Data for: Optimization of solvent properties for post-combustion CO2 capture using process simulation

description: Process simulations have been used to identify the most important properties of the absorbent for post-combustion CO2 recovery and provide valuable insight for further solvent development. The process model has been validated by pilot plant data. Afterward, the effects of various solvent physicochemical properties including liquid density, surface tension, thermal conductivity, viscosity, volatility, heat capacity, CO2 solubility, enthalpy of solution, solvent strength and absorption kinetics on the CO2 capture performance have been investigated separately. Then a viscous solvent with low volatility and slow absorption kinetics is assumed to service a 450 MW natural gas combined cycle power plant. Combined with an economic analysis, sensitivity studies of solvent properties are employed for this water-lean absorbent.
DOI: 10.17632/z628khnw4x
title: ANIS: High energy neutrino generator for neutrino telescopes

description: Abstract We present the high-energy neutrino Monte Carlo event generator ANIS (All Neutrino Interaction Simulation). The program provides a detailed and flexible neutrino event simulation for high-energy neutrino detectors, such as AMANDA, ANTARES or ICECUBE. It generates neutrinos of any flavor according to a specified flux and propagates them through the Earth. In a final step neutrino interactions are simulated within a specified volume. All relevant standard model processes are implemented. We dis... Title of program: ANIS Catalogue Id: ADWF_v1_0 Nature of problem Monte Carlo neutrino event generator for high-energy neutrino telescopes. Versions of this program held in the CPC repository in Mendeley Data ADWF_v1_0; ANIS; 10.1016/j.cpc.2005.03.113 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.6084/m9.figshare.12012852.v1
title: Murine calcium imaging data

description: Calcium imaging data for 3 mice in spontaneous and task ('cr' and 'hit') states<br>
DOI: 10.6084/m9.figshare.9995393.v1
title: Mangrove Extent maps for the Klang Islands, Malaysia

description: <b>Mangrove Extent maps for the Klang Islands, Malaysia</b><br>Satellite derived maps of mangrove extent in the Klang Islands, Malaysia for use within a GIS.<br>Using the 2010 Global Mangrove Watch (GMW) map downloaded from https://data.unep-wcmc.org/datasets/45 as a baseline, a refined local area product was generated by manually editing the GMW polygons in QGIS to match satellite data from 2010.<br>This refined map was then used as a baseline and manually edited to reflect changes when comparing to satellite data for a given year. The output is a map of mangrove extent for each year.<br>Due to the difficulty in obtaining cloud free satellite data for the entire area multiple scenes were used for many years.<br>Data are supplied as polygons in ESRI shapefile format with a separate shapefile for each year.<br><br>
DOI: 10.17605/osf.io/nphcw
title: The impact of fermented food consumption on gastrointestinal discomfort and defecation in healthy adults: a systematic review [PIMENTO-WG3-E1]

description: This systematic review investigates the effects of fermented foods (FF) on gastrointestinal (GI) discomfort and normal defecation in healthy adults, following European Food Safety Authority (EFSA) guidelines. GI discomfort includes symptoms like abdominal pain, bloating, and excessive gas. A reduction in these symptoms indicates improved GI function, which is a beneficial effect. The review will also assess FF's impact on defecation, including bowel movement frequency, stool bulk, consistency, and transit time, all crucial for maintaining a healthy digestive system without causing diarrhoea.
DOI: 10.6084/m9.figshare.27063286.v2
title: High-pressure pump–probe experiments reveal the mechanism of excited-state proton-coupled electron transfer and a shift from stepwise to concerted pathways

description: Chemical energy conversion and storage in natural and artificial systems rely on proton coupled electron transfer (PCET) processes. Concerted proton-electron transfer (CPET) can provide kinetic advantages over stepwise electron and proton transfers (ET/PT or PT/ET), thus understanding how to distinguish and modulate these processes is important for their associated applications. Here, we examined PCET from the excited state of a ruthenium complex under high pressures. At lower buffer or quencher concentrations, a stepwise PT/ET mechanism was observed. With increasing pressure, PT slowed and ET sped up, indicating a merging of the two steps. In contrast, CPET at higher concentrations of buffer or quencher show no pressure dependence on the reaction rate. This is because the simultaneous transfer of electron and protons circumvents changes in charges and, consequently, in solvent electrostriction during the transition state. Our findings demonstrate that pressure can serve as a tool to monitor charge changes along PCET pathways, aiding in the identification of its mechanisms.
DOI: 10.6084/m9.figshare.29109074.v1
title: SA1_diff_1

description: NU1 cells Chipseq data
DOI: 10.6084/m9.figshare.21788342.v1
title: Narrative_emotion_recognition.sav

description: Emotion recognition from text, more specifically from narrative structure.
DOI: 10.17632/8m4y7cdnv3
title: Data for “Missing Women in India: Gender-Specific Effects of Early-Life Rainfall Shocks”

description: This folder includes datasets and do-files for our paper "Missing Women in India: Gender-Specific Effects of Early-Life Rainfall Shocks". It contains rainfall data for each Indian district from 1911 to 2011, and has population by single age for each district in Census years (1991, 2001, and 2011).
DOI: 10.17632/ctjtb727dt
title: Empirical Analysis of BRICS countries pathway toward Low-carbon environment

description: CAT methodical approaches six critical areas in assessing every country's commitment to Nationally Determined Contributions (NDC) to the Paris Agreement and UNFCCC protocols. Table 1 explains these six criteria of CAT assessment. To provide policy makers, civil society, and the media with an up-to-date assessment of countries' individual reduction targets and a global overview of their combined effects, the Climate Action Tracker (CAT) project was launched in 2009. All of this is being done in order to make these pledges more transparent and to encourage those governments that haven't made them yet to do so. In addition, CAT assesses whether countries are on track to meet their commitments with current implemented policies.
DOI: 10.17632/fsg3r9j6py
title: Removal of Peroxides from Functionalized Polyethylene Glycol (PEG) and Effects on the Stability and Sensitivity of Resulting PEGylated Conjugates

description: The removal of peroxides from commercial samples of PEG through freeze-drying can have positive effects on the stability and sensitivity of ROS-sensing conjugates made using the PEG. These data demonstrate the positive effects of a freeze-drying protocol on the ROS-sensing ability and stability in solution of these conjugates.
DOI: 10.6084/m9.figshare.26362393.v1
title: pce_prediction

description: PCE prediction
DOI: 10.6084/m9.figshare.28378376.v1
title: SPSS RESULT-SEM- CSR-CE-CR-CL.sav

description: The study titled "Effect of Corporate Social Responsibility (CSR) on customer loyalty with the mediating role of customer engagement and corporate reputation: Evidence from Ethiopian Banking Sector" aims to investigate the relationship between CSR initiatives, customer Engagement, Corporate reputation, and customer loyalty within the context of commercial banks in Ethiopia. The research is predominantly explanatory in nature, seeking to understand how CSR practices impact customer loyalty through the mediating role of customer engagement and corporate reputation.Data for this study was collected using a structured questionnaire as the data collection instrument. The respondents involved in the study were customers of commercial banks in Ethiopia, with a total sample size of 790 individuals. Purposive sampling techniques were employed to select respondents who have direct experience with the services provided by commercial banks.The analysis of the data was conducted using the AMOS structural equation model in conjunction with SPSS software to test and evaluate the hypotheses formulated in the study. The data description includes detailed information on the demographic characteristics of the respondents, allowing for a comprehensive understanding of the sample profile.Furthermore, the data collected encompasses various dimensions related to CSR initiatives, including economic, legal, ethical, philanthropic, environmental aspects. Additionally, customer engagement, corporate reputation and customer loyalty related data are included to assess the impact of CSR on customer loyalty through the mediating role of customer engagement and corporate reputation. This comprehensive dataset provides valuable insights into the relationships between CSR practices, customer engagement, corporate reputation, and customer loyalty in the context of commercial banks in Ethiopia.<br>
DOI: 10.17632/46jtgzt4cb
title: Risk of fungal infection in patients with psoriasis receiving biologics: a retrospective single-center cohort study

description: Supplemental materials for "Risk of fungal infection in patients with psoriasis receiving biologics: a retrospective single-center cohort study"
DOI: 10.17632/hfb7nycdd8
title: REPRESENTACIONES SOCIALES EN LOS ESTUDIANTES UNIVERSIATARIOS DE MASCULINIDAD Y FEMINEIDAD

description: Lo autores decidimos abordar este tema y elaborar el siguiente articulo científico con el firme objetivo de identificar los factores que influyen en la formación de dichos conceptos de masculinidad, feminidad y como estos repercuten en el comportamiento de los individuos en cuanto a actitudes y la generación de prejuicios negativos. La información del presente trabajo se recolecto principalmente mediante un cuestionario y posteriormente fue procesada. La aplicación de esos recursos tuvieron resultados diversos debido a la distinta interpretacion de los invidiuos que desarrollaron el cuestionario.Como resultado se mostró que la mayoria de individuos tiene interiorizada una idea tradicional y conservadora de masculinidad y feminidad, que generalmente se denota en las expresiones verbales de estos actores sociales sin embargo a pesar de eso algunos presentan una leve desconstruccion propia de la interaccion en otros campos sociales tales como amistades y entorno academico.
DOI: 10.6084/m9.figshare.1026131.v8
title: MD trajectories of ALA2 (fileset)

description: Ten 10ns trajectories of of alanine dipeptide, simulated using OpenMM 6.0.1 (CUDA platform, NVNDIA GTX660) with the AMBER99SB-ILDN force field at 300K (langevin dynamics, friction coefficient of 91/ps, timestep of 2fs) with GBSA implicit solvent. The coodrinates are saved every 1ps. Each trajectory file contains 9,999 snapshots. The dataset was generated by running the simulate-ala2.py script (included). The total size of this dataset is 30MB.