cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.nh0fp1b/1
title: HUMAN_FOVEAL_CONES

description: This dataset contains high resolution images of the foveal region of 28 eyes of 16 subjects. The images are accompanied by text files listing all cone locations in pixels. There is a Matlab script that can be used to plot the cone locations on the corresponding image. There is a *.csv file listing the subject code, eye, retinal magnification factor (microns/degree) and image scale (pixels per degree).
DOI: 10.17632/db3zwfjv6d.1
title: Data for: Extreme Natural and Man-Made Events and Human Adaptive Responses Mediated by Information and Communication Technologies’ Use: A Systematic Literature Review

description: File #1: Data coding scheme and categories File #2: Includes a more extensive analysis of the 60 articles (also available online on OSF at https://osf.io/n7r9e/?view_only=e3f515294a3e449a9792060c484d24cc ). This analysis focused on: study characteristics (number of participants and observations/messages; geographical coverage; period of observation/data collection; studied events); extreme event(s) studied; ICT devices and platforms from which data was collected; coding in the three adaptive functions categories; and source of coping response (individuals or organizations). In addition, full bibliographic references of these 60 articles were included in the file, rather than in the article’s reference list, due to its extension.
DOI: 10.17632/ftcsyc4ygr.1
title: Data for: A portable internal contamination monitor with dual detectors for screening in a large-scale radiological incident

description: Fig. 7 presents the spectra of natural background acquired by a portable internal contamination monitor in 5 hours in the internal irradiation physics laboratory. Peaks of K-40 at 1460.8keV and Tl-208 at 2614keV are significant. The 6mm-Lead shield also reduced the count rate caused by the background radia-tion, especially in the low energy region. Fig.8 demonstrates the gamma spectral of sMBCAM acquired by a portable internal contamination monitor in natural environment. Peaks of artificial nuclides, including Cs-137 at 662keV, Y-88 at 898keV, Co-60 at 1173.2keV and 1332.5keV, are recognized easily.
DOI: 10.17632/wkn4mtc6ny.1
title: Data for: Stabilization/Solidification of Lead- and Zinc-contaminated Soils using MgO and CO2
DOI: 10.17632/yv2g4jv858.1
title: Data for: Groundwater Recharge on a Hill

description: MATLAB code used to generate the figures in the paper.
DOI: 10.5061/dryad.24p1k82/1
title: Algerian sheep genotypes (.map file)

description: Genotypes obtained with the Illumina OvineSNP50K Genotyping BeadChip (markers files by chromosomes) for two Algerian sheep breeds in a Plink format.
DOI: 10.5061/dryad.24p1k82/2
title: Algerian sheep genotypes (.ped file)

description: Genotypes obtained with the Illumina OvineSNP50K Genotyping BeadChip (genotype files) for two Algerian sheep breeds in a Plink format.
DOI: 10.5061/dryad.4395r55/7
title: DAPC input

description: Genepop formatted file of the 90% similarity threshold with 75% of taxa used as input to the Discriminant analysis of Principal Components (DAPC).
DOI: 10.5061/dryad.4395r55/8
title: Single SNP VCF file

description: 90% similarity threshold with 75% of individuals single SNP (sSNP) file used to generate the input matrices for Structure, BEAST, and DAPC.
DOI: 10.5061/dryad.4nb12g2.1/10.1
title: Nuclear detection probabilities 5 dpf (samples 1-5)

description: Nuclear detection probabilities of each 5 dpf sample analyzed provided as individual 32-bit multi-page tiff z-stacks. We recommend opening in Fiji (Fiji Is Just ImageJ).
DOI: 10.5061/dryad.4nb12g2.1/11.1
title: 5 dpf (samples 1-5) anatomical brain region segmentations

description: Segmentations of anatomical brain regions in the same space as nuclear detections are provided herein.
DOI: 10.5061/dryad.4nb12g2.1/9.1
title: Nuclei positioning and characteristics

description: Nuclei position and morphological characteristics provided by simpleITK analysis are provided herein as .csv files.
DOI: 10.5061/dryad.56m57q8/1
title: Cytochrome c oxidase subunit II (cox2) sequences of oomycota for uparse

description: Reference sequence database of oomycete cox2 sequences and decoi sequences of fungi and Viridiplantae for analysis of metabarcoding data using uparse
DOI: 10.5061/dryad.5g6254c/1
title: Galland_et_al_2019_Data_Joural_of_Ecology
DOI: 10.5061/dryad.66bp77v/1
title: Capture history

description: Sampled individuals’ capture history. 13-1 = first sampling session in year 2013; 17-2 = second sampling session in year 2017, etc. . ‘1’ denotes detection in the according sampling session; ‘0’ denotes no detection
DOI: 10.5061/dryad.66bp77v/2
title: Multilocus genotypes

description: Sampled individuals’ genotypes. See Zarzoso-Lacoste et al. 2018 [25] for information on the microsatellite markers used. 0 = missing data
DOI: 10.5061/dryad.66bp77v/3
title: Mother-daughter pairs detected per year

description: Mother-daughter pairs detected per year.
DOI: 10.5061/dryad.6vv10h0/10
title: Fig.4d allele frequencies of SNP in the cadherin gene
DOI: 10.5061/dryad.6vv10h0/11
title: Fig.4b Cadherin gene expression relative to RPS17
DOI: 10.5061/dryad.6vv10h0/3
title: Mosquito life history data: Female adult mortality
DOI: 10.5061/dryad.6vv10h0/4
title: Mosquito life history data: Pupation rate
DOI: 10.5061/dryad.6vv10h0/5
title: Mosquito life history data: sex ratio
DOI: 10.5061/dryad.6vv10h0/6
title: Fig.2a virus load and Wolbachia density of evolved lines
DOI: 10.5061/dryad.6vv10h0/7
title: Fig.2b Wolbachia negative samples

description: Mosquitoes that underwent selection and their Wolbachia have since been removed with antibiotic treatment
DOI: 10.5061/dryad.6vv10h0/8
title: Fig.2b Wolbachia positive samples
DOI: 10.5061/dryad.6vv10h0/9
title: Fig.3 Population growth rate and virus load per population

description: Result of the model that is populated by the mosquito life history data.
DOI: 10.5061/dryad.747n4dv/1
title: R code for theoretical model

description: See README
DOI: 10.5061/dryad.747n4dv/2
title: dryaddata_2011

description: Data for 2011 study.
DOI: 10.5061/dryad.747n4dv/3
title: dryaddata_2012

description: Data from 2012 study.
DOI: 10.5061/dryad.747n4dv/4
title: dryaddata_2013

description: Data from 2013 study.
DOI: 10.5061/dryad.747n4dv/5
title: dryadanalysis

description: R code of analyses.
DOI: 10.5061/dryad.82p6d2j/1
title: Thermal performance curve

description: Ontogenetic and Transgenerational effects of temperature on thermal performance curve (and parameters) . Offspring and parents were reared in one of three environments 28 ± 0ºC (28C), 28 ± 4ºC (28V), and 30 ± 0ºC (30C)
DOI: 10.5061/dryad.fg80hp6/1
title: Data files and R script used for analysis

description: This file contains .csv files with data as well as R script that was used in the linear mixed model analysis of Meir et al, "Reduced metabolism and increased O2 pulse support hypoxic flight in the bar-headed goose (Anser indicus)"
DOI: 10.5061/dryad.g2p8vg4/1
title: MICROSAT Drogli JOH 2019

description: microsatelite loci size
DOI: 10.5061/dryad.g5t535g/1
title: Birdsong Data
DOI: 10.5061/dryad.gf7hc1r/1
title: Raw Data Hood et al. 2019 Biology Letters

description: Supplementa Table 1: Raw data from “Human-mediated disturbance in multitrophic interactions results in outbreak level of North America’s most venomous caterpillar” by G.R. Hood, M. Comerford2, A.K. Weaver, P.M. Morton, and S.P. Egan.Given are the number of asp counted in the survey in Houston, Texas, USA in 2015, 2017, and 2018. Noted is the date of the survey, if the tree was netted (Y) or non-netted (N), the number of asp (larvae and pupae) observed on each tree, the location of the survey (TMC = Texas Medical Center; Rice = Rice University; HP = Herman Park; SG = Southgate Neighborhood), the year the survey was conducted, and if the tree of previously netted (Y = previously netted; N = not previously netted).
DOI: 10.5061/dryad.j5vv5c4/1
title: Preference Data for Francis 2019

description: This file has a single line for each landing made by each bee. In each treatment bouts are censored after there are fewer than 10 bees remeaining in each treatment. This only includes bee that drank nectar on 25% of landings in treatments that include nectar. Data collected in controlled lab based behavioral assay. See the metadata file for more information on each variable.
DOI: 10.5061/dryad.j5vv5c4/2
title: BoutLengthDataFrancis2019

description: This file has a single line for each bee and includes all bees tested in the experiment that made at least one landing. Data collected in controlled lab based behavioral assay. See the metadata file for more information on each variable.
DOI: 10.5061/dryad.mr47gq3/5
title: Gwas budburst.txt
DOI: 10.5061/dryad.p19fp25/1
title: original data

description: Excel file containing original data data from the study
DOI: 10.5061/dryad.qv9471s/1
title: Data from: Species Composition and Community Structure of Small Pest Rodents (Muridae) in Cultivated and Fallow Fields in Maize Growing Areas in Mayuge district, Eastern Uganda

description: Data was collected from Capture Mark Release experiment that were set in cultivated and fallow filed habitats in Mayuge district, eastern Uganda. the CMR was ru for 2 years from 2016-2018. data was collected on a monthly basis from all the 4 field habitats
DOI: 10.5061/dryad.s97v921/1
title: Benson et al. 2019 Food Value Manuscript Data

description: The following file contains README information and raw data in support of this manuscript.
DOI: 10.5061/dryad.t8sm4m6/1
title: Supplemental Data S1

description: Deduced amino acid sequences of the intact GPCR genes identified in this study.
DOI: 10.5061/dryad.t8sm4m6/2
title: Supplemental Table S6

description: Locus of each gene of Hydrophis melanocephalus identified in this study.
DOI: 10.5061/dryad.td8d20v/1
title: 054-001.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5061/dryad.td8d20v/2
title: 054-002.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5061/dryad.tv2tk65/1
title: Aerial capacitance
DOI: 10.5061/dryad.tv2tk65/2
title: Cyclic voltammetry
DOI: 10.5061/dryad.tv2tk65/3
title: Galvanostatic charge discharge

description: First cycle galvanostatic charge discharge for the TMD samples.
DOI: 10.5061/dryad.tv2tk65/4
title: GCD capacitance

description: Capacitance obtained from galvanostatic charge discharge curves at varying current rates.
DOI: 10.5061/dryad.tv2tk65/5
title: TEM and EDX

description: TEM images and EDX spectra for the various TMD samples
DOI: 10.5061/dryad.tv2tk65/6
title: Capacity retention

description: Battery capacity retention data
DOI: 10.17632/95tyjj6cvm.1
title: Data for: Development of a rapid micro-Raman spectroscopy approach for detection of NIAS in LDPE pellets and extruded films for food packaging applications

description: Identification and quantification of Non Intentionally Added Substances (NIAS) at low concentrations and eventually their distribution on Low Density Polyethylene (LDPE) films is an important issue. As Raman spectroscopy techniques are innovative and sensitive analytical methods and do not require pretreatment and manipulation of the sample, these were used for the identification of NIAS in LDPE pellet and films, which are commonly used for food packaging applications. The aggregation state of NIAS in LDPE were observed by Raman imaging with micrometric resolution. Four main NIAS compounds were identified in granule and film surfaces by confocal Raman spectroscopy: calcite (CaCO3), calcium sulphate (CaSO4), polystyrene (PS) and titanium dioxide (TiO2) in anatase form. By a semi-quantitative evaluation of the inorganic NIAS, 9.93 mg/kg of CaCO3, 1.62 mg/kg of CaSO4 and 0.17 mg/kg of TiO2 were estimated. The experimental findings achieved by Raman analysis were confirmed by the results obtained by Inductively Coupled Plasma-Mass Spectrometry (ICP-MS). Moreover, the toxicity of the identified compounds was examined according to the Cramer rules.
DOI: 10.17632/b9bj6ksrnx.1
title: Data for: Magmatic-hydrothermal transition of Mo-W-mineralized granite-pegmatite-greisen system recorded by trace elements in quartz: Krupka district, Eastern Krušné hory/Erzgebirge

description: LA ICP-MS concentrations of trace elements in quartz from an evolved granite stock Knöttel in the eastern Erzgebirge/Krušné hory in the Czech Republic, which is connected with greisenization, hydrothermal mineralization and pegmatite bodies.
DOI: 10.17632/c8p4d734p7.1
title: Data for: Between Geography and Transport: A Scientometric Analysis of Port Studies in Journal of Transport Geography

description: The list of papers that are included in this study for analysis.
DOI: 10.17632/p6tpp8s692.1
title: Data for: Direct and indirect impact of the bacterial strain Pseudomonas aeruginosa on the dissolution of synthetic Fe(III)- and Fe(II)-bearing basaltic glasses

description: Data of the study: Direct and indirect impact of the bacterial strain Pseudomonas aeruginosa on the dissolution of synthetic Fe(III)- and Fe(II)-bearing basaltic glasses
DOI: 10.5061/dryad.27nj856/1
title: Data for experiment 1 & 2

description: This zip-file contains three separate data files including original data collected for the two experiments: Experiment 1: male nest choice, experiment 2: Female nest and partner choice. files: 01_MaleChoice.txt, 01b_MaleChoiceConsistency.txt, 02_FemaleChoice.txt. The first line contains column headers with descriptions of the variables. See publication for more details, selection of relevant variables, and data handling.
DOI: 10.5061/dryad.2q1301v/1
title: rapamycin (experiment 3)

description: Here we looked at sex-specific fitness under two diets and four rapamycin concentrations.Male fitness was measured as competitive fertility and female fitness was measured as fecundity.
DOI: 10.5061/dryad.2q76p8f/1
title: Files associated with the study "Integrating three comprehensive datasets shows that mitochondrial DNA variation is linked to species traits and palaeogeographic events in European butterflies."

description: The dataset contains the files associated with the study "Integrating three comprehensive datasets shows that mitochondrial DNA variation is linked to species traits and palaeogeographic events in European butterflies." The files are described below: &gt;Appendix S2.R. The R script used to carry out the analyses of the study &gt;data_specimens.txt. Contains the data for each specimen included in the analysis &gt;data_sequences.fas. Contains the COI sequences of the specimens in the same order as in the previous file &gt;traits.txt. Contains the traits used to identify phylogenetic signals and to carry out the phylogenetic regressions. &gt;Butterflies_Europe_tree.nwk. A Newick multi-locus tree for all the European butterfly species. &gt;ne_10m_ocean (series of associated files) is a Ocean leyer used to plot the results of the zoogeographic regionalization Some files generated by the analysis are also provided: &gt;data_specimens_with_areas.txt. The same as data_specimens.txt but it also contains attribution of specimens to the 2.5x2.5 degree grid &gt;tabfinal.txt. The same as traits.txt but it contains the values for teh indices of genetic diversification and the factors for phenology and ecophysiology variables. &gt;Butterflies_Europe_tree_ultrametric.nwk. The same as "Butterflies_Europe_tree.nwk." after transformation to an ultramtric tree with the "force.ultrametric" R function
DOI: 10.5061/dryad.3ng4b2g/1
title: Appendices and supplementary material

description: Appendices and Supplementary Materials
DOI: 10.5061/dryad.4dj6042/1
title: Raw data for Nygard et al study

description: NygardetalBehavEcol_datafile.csv contains the data used for the analyses of the effects of male size and egg size and of the influence of average water temperature during brooding on embryo survival and average embryo size in the pipefish Syngnathus typhle.
DOI: 10.5061/dryad.5800rk5/1
title: Semchenko_et_al_2019_JEcol_data

description: Data were collected over three years from a common garden, mesocosm experiment, maintained in Tartu, Estonia. Pot – pot ID; Community_type – local or mixed plant community;	Activated_carbon – with or without activated carbon addition; Inoculation	 - sterilised or non-sterilised soil inoculum; Population_origin – genotype origin (site A, B or C); Community_composition – origin of plant community (site A, B or C for local communities or AB, AC, CB for mixed communities); Species_ID – species ID; Shoot_mass_Year1_g  - individual dry shoot mass at the end of the first growth season; State_Year1 – individual survival at the end of the first growth season; Shoot_mass_Year2_g - individual dry shoot mass at the end of the second growth season;	State_Year2 - individual survival at the end of the second growth season;	Inoculum_origin – soil inoculum origin (site A, B or C); Inoculum_type – inoculum relationship to plant individual (home or away); Shoot_mass_Year3_g - species dry shoot mass at the end of the third growth season; State_Year3 - species survival at the end of the third growth season; Root_diameter_mm – root mean diameter from mixed community samples at the end of the first growth season; Root_mass_g – root dry mass at the end of the first growth season (sum of two soil cores); Specific_root_length_cm_mg – specific root length from mixed community samples at the end of the first growth season.
DOI: 10.5061/dryad.6s5651k/1
title: Appendix S1: Species list, Cassian Formation

description: A list of species described from the Late Triassic Cassian Formation, Dolomites, Northern Italy, was compiled by the authors of the accompanying publication. This list is used for analysis in the main text. It is intended to facilitate comparisons with other fossil lagerstätten not only in terms of taxonomic richness but also in terms of clade proportions and the distribution of primary shell mineralogy.
DOI: 10.5061/dryad.6s5651k/6
title: Appendix S2: Explanatory notes and references

description: Appendix S2 provides details on the compiled list of species from the Cassian Formation (Appendix S1), including information on the localities and methods. It lists the references used for the literature compilation.
DOI: 10.5061/dryad.6s5651k/8
title: README_Roden_et_al_2019
DOI: 10.5061/dryad.6vv10h0/12
title: Fig.4c Alpha mannosidase gene expression relative to RPS17
DOI: 10.5061/dryad.7k2526d/1
title: Data Supplement: Land-use and climatic causes of environmental novelty in Wisconsin since 1890

description: This supplement quantifies and compares agricultural land use, forest composition, and climatic causes of environmental novelty in Wisconsin over the past century.
DOI: 10.5061/dryad.bm7q0sp/1
title: GEB_Budnick_Datasets

description: A zipfile containing the diatom, fish, and aquatic insect community and environmental data sets used for statistical analysis as described in Budnick et al., 2019, GEB
DOI: 10.5061/dryad.g8c0vm8/3
title: Appendix e-2 Extracted study data

description: Included studies and extracted study data
DOI: 10.5061/dryad.j5vv5c4/3
title: Supplemental Data Francis 2019

description: This file has a single line for each bee tested in the supplemental experiment. Data collected in controlled lab based behavioral assay. See the metadata file for more information on each variable.
DOI: 10.5061/dryad.q53v1p4/1
title: SSR data for 27 populations of P. teres fsp teres from barley and barley grass

description: 17 SSR loci, 27 populations from barley and barley grass. Data in GenAlex format.
DOI: 10.5061/dryad.q5n39p4.3
title: Data from: PER-SIMPER - a new tool for inferring community assembly processes from taxon occurrences
DOI: 10.5061/dryad.q5n39p4.3/1.3
title: R PerSIMPER function

description: Based on a presence/absence matrix, this function allows the identification of the first-order process of assembly underlying a set of taxonomic assemblages. Its use should therefore be limited to the comparison of significantly distinct taxonomic sets. But at the same time connected enough to allow the potential dispersal of species between these different sets. The PER-SIMPER method distinguishes the main ecological assembly process (between species dispersal capacity and niche richness) at the origin of the observed taxonomic differences between two (or more) compared sets of assemblages. The PER-SIMPER method is associated with the calculation of the E index (the logarithm of the sum of squared deviations between empirical and simulated SIMPER profiles) to assist in distinguishing the result of PER-SIMPER analyses.
DOI: 10.5061/dryad.q5n39p4.3/2.3
title: Help notes PER-SIMPER

description: Help notes of the PER-SIMPER R function. R function included too.
DOI: 10.5061/dryad.q5n39p4.3/3.3
title: PerSIMPERgroups
DOI: 10.5061/dryad.sd370k0/1
title: Data and scripts for Boyle et al. 2019.

description: Includes genetic, demographic, and environmental data for the sites surveyed as a part of Boyle et al. 2019, Population genomics and demographic sampling of the ant-plant Vachellia drepanolobium and its symbiotic ants from sites across its range in East Africa. Also includes scripts used in data analysis.
DOI: 10.5061/dryad.t8sm4m6/3
title: Supplemental Table S7

description: Locus of each gene of Emydocephalus ijimae identified in this study.
DOI: 10.5061/dryad.t8sm4m6/4
title: Supplemental Table S8

description: Locus of each gene of Laticauda laticaudata identified in this study.
DOI: 10.5061/dryad.t8sm4m6/5
title: Supplemental Table S9

description: Locus of each gene of Laticauda colubrina identified in this study.
DOI: 10.5061/dryad.t8sm4m6/6
title: Supplemental Table S10

description: Locus of each gene of a king cobra (OphHan 1.0, GenBank accession GCA_000516915.1) identified in this study.
DOI: 10.5061/dryad.t8sm4m6/7
title: Supplemental Table S11

description: Locus of each gene of a garter snake (Thamnophis_sirtalis-6.0, GenBank accession GCA_001077635.2) identified in this study.
DOI: 10.5061/dryad.t8sm4m6/8
title: Supplemental Table S12

description: Locus of each gene of a common viper (Vber1.0, GenBank accession GCA_000800605.1) identified in this study.
DOI: 10.5061/dryad.t8sm4m6/9
title: Supplemental Table S13

description: Locus of each gene of a green anole (AnoCar2.0, GenBank accession GCA_000090745.2) identified in this study.
DOI: 10.5061/dryad.td8d20v/3
title: 054-003.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5061/dryad.td8d20v/4
title: 054-004.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5061/dryad.td8d20v/5
title: 054-005.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5061/dryad.td8d20v/6
title: 085-001.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5061/dryad.td8d20v/7
title: 085-002.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5061/dryad.td8d20v/8
title: 085-003.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5061/dryad.vm692vr/1
title: MinimalCensusData4TC

description: These are diameter at breast height (cm) for trees, mostly longleaf pines, measured in 2014 in plots that compose an experiment in ecological forestry. Only trees in the neighborhood of thermocouples are included. X & y coordinates (local coordinate system) are included, along with Plot IDs.
DOI: 10.5061/dryad.vm692vr/2
title: Fire_intensity_2016

description: Contains summary of thermocouple data from 2016 burns: Plotid (1-18), X & Y UTM coordinates, BA is basal area estimated with a 10-factor (ft2/ac) prism, height of herbaceous fuel layer (Herb Ht), height of shrub layer (Shrb Ht), Wiregrass cover (%) is Arst, number of trees &lt; 10 cm dbh, number of trees with 0 &lt; dbh &lt; 10 cm (Tree Ct), time when temperature reached 60 Celsius (First Temp Spike), duration of temperatures &gt;= 60 degrees Celsius (Seconds Over), and maximum temperature (K Type Max).
DOI: 10.5061/dryad.vm692vr/3
title: 2016_burn_data$Fuel.moisture

description: Contains live fuel moisture data collected during fires. Includes Date, Time of collecion, and gravimetric fuel moisture expressed on dry fuel weigh basis (g/g)
DOI: 10.5061/dryad.vm692vr/4
title: TCnonSpatial.R

description: Performs the multiple linear regression and relative importance analysis
DOI: 10.5061/dryad.vm692vr/5
title: TCspatial.R

description: Performs maximum likelihood, neighborhood analysis on flame temperatures