cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.n5tb2rbt9
title: Identifying the fitness consequences of sex in complex natural environments

description: In the natural world, sex prevails, despite its costs. While much effort
 has been dedicated to identifying the intrinsic costs of sex (e.g. the
 cost of males), few studies have identified the ecological fitness
 consequences of sex. Furthermore, correlated biological traits that differ
 between sexuals and asexuals may alter these costs, or even render the
 typical costs of sex irrelevant. We conducted a large-scale multi-site
 reciprocal transplant using multiple sexual and asexual genotypes of a
 native North American wildflower to show that sexual genotypes have
 reduced lifetime fitness, despite lower herbivory. We separated the
 effects of sex from those of hybridity, finding that over-winter survival
 is elevated in asexuals regardless of hybridity, but herbivores target
 hybrid asexuals more than non-hybrid asexual or sexual genotypes. Survival
 is lowest in homozygous sexual lineages, implicating inbreeding depression
 as a cost of sex. Our results show that the consequences of sex are shaped
 not just by sex itself, but by complex natural environments, correlated
 traits, and the identity and availability of mates.
description: Three datasets are included. The pollen viability dataset was
 collected in the greenhouse using methods outlined in the manuscript (buds
 collected at Stage 12 and stained for viability, followed by assessment of
 100 grains of pollen visible on the slide). The field data was collected
 via field censuses conducted by a team of trained researchers. Plants were
 censused for maximum plant height, survival through the first winter and
 through a second winter, fruit number, and estimated total herbivory.
 Seeds were estimated from average seed set per genotype per garden and
 used to calculate the maximum number of seeds in the first growing season
 (see raw seed numbers in Rushworthetal_seedcounts). Plant width was
 measured at planting to include as a covariate.
 Herbivory (or "plant damage") data has been
 manipulated. A small constant was added to each value and then this new
 value was log-transformed. The log-transformed value and the original
 value are in the dataset. 
description: Any missing values indicate that a plant either did not survive
 to census or that herbivory was not possible to census in a particular way
 (for example, that all leaves were missing at the time of first census, in
 which case leaf herbivory could not be measured). No other data values
 should be missing.  Datasets have been uploaded as
 Excel documents so that a second tab could be included to explain the
 header names in each dataset. Please note that to use the R script, these
 datasets will need to be converted to csv files. All outlier removal, etc.
 is indicated in the accompanying R script.  Please feel
 free to contact the corresponding author with any questions.
DOI: 10.5061/dryad.4mw6m9082
title: Data from: A synthesis of the effects of cheatgrass invasion on U.S. Great Basin carbon storage

description: Non-native, invasive Bromus tectorum (cheatgrass) is pervasive in
 sagebrush ecosystems in the Great Basin ecoregion of the western U.S.,
 competing with native plants and promoting more frequent fires. As a
 result, cheatgrass invasion likely alters carbon (C) storage in the
 region. Many studies have measured C pools in one or more common
 vegetation types: native sagebrush, invaded sagebrush, and
 cheatgrass-dominated (often burned) sites, but these results have yet to
 be synthesized. We performed a literature review to identify studies
 assessing the consequences of invasion on C storage in aboveground biomass
 (AGB), belowground biomass (BGB), litter, organic soil, and total soil. We
 identified 41 articles containing 386 unique studies and estimated C
 storage across pools and vegetation types and used linear mixed models to
 identify the main predictors. We found consistent declines in biomass C
 with invasion: AGB C was 55% lower in cheatgrass (40 ± 4 g C m-2) than in
 native sagebrush (89 ± 27 g C m-2) and BGB C was 62% lower in cheatgrass
 (90 ± 17 g C m-2) than native sagebrush (238 ± 60 g C m-2). In contrast,
 litter C was &gt; 4x higher in cheatgrass (154 ± 12 g C m-2) compared
 to native sagebrush (32 ± 12 g C m-2). Soil organic C (SOC) in the top 10
 cm was significantly higher in cheatgrass than in native or invaded
 sagebrush. SOC below 20 cm was significantly related to the time since
 most recent fire and losses were observed in deep SOC in cheatgrass
 systems &gt; 5 years after a fire. There were no significant changes
 in total soil C across vegetation types. Synthesis and Applications:
 Cheatgrass invasion decreases biodiversity and rangeland productivity and
 alters fire regimes. Our findings indicate cheatgrass invasion also
 results in persistent biomass C losses that occur with this state change.
 We estimate that conversion from native sagebrush to cheatgrass leads to a
 net reduction of C storage in biomass and litter of 76 g C m-2, or 16 Tg C
 across the Great Basin without management practices like native sagebrush
 restoration or cheatgrass removal.10-Sep-2020
description: These data were collected from published studies as either raw
 data obtained from the study authors or mean values extracted from the
 study. All data has been cleaned (i.e., homogenized, converted to the same
 units (g C m-2)) and combined for the five carbon pools in aboveground
 biomass, belowground biomass, litter, soil organic carbon and total soil
 carbon in three vegetation types (native sagebrush, invaded sagebrush,
 cheatgrass). The code for processing and analyzing these data can be found
 at: https://github.com/nagyrc/C_fire_invasives.
description: There is a ReadMe file (readme.txt) that contains information and
 metadata on the primary data file (siwf.csv). There is a list of all data
 files contained in this repository
 (list_of_data_files_for_Dryad.txt). Finally, there is a list of references
 for the original data sources (data_studies_refs.pdf).
DOI: 10.5061/dryad.ksn02v72h
title: Supplementary data for "Visual cues of predation risk outweigh acoustic cues: a field experiment in black-capped chickadees"

description: All data required for the analyses, including R code, presented in
 the paper "Visual cues of predation risk outweigh acoustic
 cues: a field experiment in black-capped chickadees"
 DOI: 10.1098/rspb.2020.2002
description: The experiment described henceforth relied on PIT tags to
 automatically register visits by birds to feeders. All information about
 data processing and analysis can be found in the original article and its
 corresponding Electronic Supplementary Material.
description: All descriptive information about this Dataset can be found in
 the ReadMe.pdf file.
DOI: 10.5061/dryad.t1g1jwt0s
title: Low- versus standard-dose alteplase in acute lacunar ischemic stroke: the ENCHANTED trial - online supplemental

description: Objective: To determine any differential efficacy and safety of low-
 versus standard-dose intravenous alteplase for lacunar versus non-lacunar
 acute ischemic stroke (AIS), we performed post-hoc analyzes from the
 Enhanced Control of Hypertension and Thrombolysis Stroke Study (ENCHANTED)
 alteplase dose-arm. Methods: In a cohort of 3297 ENCHANTED participants,
 we identified those with lacunar or non-lacunar AIS with different levels
 of confidence (definite/probable/possible) according to pre-specified
 definitions based on clinical and adjudicated imaging findings. 
 Logistic regression models were used to determine associations of lacunar
 AIS with 90-day outcomes (primary, modified Rankin scale [mRS] scores 2-6;
 secondary, other mRS scores, intracerebral hemorrhage [ICH], and early
 neurologic deterioration [END] or death) and treatment effects of low-
 versus standard-dose alteplase across lacunar and non-lacunar AIS with
 adjustment for baseline covariables. Results: Of 2588 participants with
 available imaging and clinical data, we classified cases as
 definite/probable lacunar (n=490) or non-lacunar AIS (n=2098) for primary
 analyses.  Regardless of alteplase dose received, lacunar AIS
 participants had favorable functional (mRS 2-6, adjusted odds ratio [95%
 CI] 0.60 [0.47-0.77]) and other clinical or safety outcomes, compared to
 participants with non-lacunar AIS.  Low-dose alteplase (versus
 standard) had no differential effect on functional outcomes (mRS 2-6, 1.04
 [0.87-1.24]) but reduced the risk of symptomatic ICH in all included
 participants.  There were no differential treatment effects of
 low- versus standard-dose alteplase on all outcomes across lacunar and
 non-lacunar AIS (all Pinteraction ≥0.07).  Conclusions: We found
 no evidence from the ENCHANTED trial that low-dose alteplase had any
 advantages over standard-dose for definite/probable lacunar AIS.
DOI: 10.5061/dryad.d51c5b01h
title: Spatial variability and driving factors of ecosystem services balance at watershed scale in the Lancang River Valley, Southwest China

description: Revealing the spatio-temporal change of the supply, demand and balance of
 ecosystem services (ES) associated with human activities and land use
 changes is of great significance for watershed ecosystem management.
 Taking the Lancang River Valley as a case, we explicitly studied the ES
 spatial characteristics using the land use/land cover (LULC) matrix model,
 Optimized Hot Spot Analysis and landscape pattern analysis. Further, we
 screened out the dominant explanatory variables which had significant
 influence on ES supply, demand and balance by means of Geographical
 Weighted Regression (GWR) method at pixel scale. The results showed that
 the ES demand intensity varied little throughout the watershed while the
 downstream ES supply capacity and balance value were greater than
 upstream. Meanwhile, the hotspots of ES supply and demand were mainly
 distributed in the south part but coldspots in the north part. Human
 activity factors integrating landscape pattern variables were verified to
 have negative impact on ES balance in general. Among them, the Largest
 Patch Index (LPI) had a negative influence of majority pixels while GDP,
 cultivated land ratio and Area Weighted Average Patch Fractal Dimension
 (AWAPFD) had positive effects on a few pixels. This study will provide
 scientific support for regional ecosystem service trade-off and regulation
 at multiple scales.
DOI: 10.5061/dryad.c2fqz6163
title: The next frontier: Human settlements in the marine environment

description: Human settlements have impacted most terrestrial environments on Earth.
 With a rapidly growing global population, surging demands for resources,
 and unprecedented alteration to Earth’s ecosystems, the conservation of
 our only suitable habitat is a contemporary zeitgeist. Moreover,
 humanity’s nature for enterprise and exploitation continuously pushes the
 frontiers of exploration, while the governance associated with expansion
 beyond terra firma is uncertain and rife with conflict. Though the notion
 of human expansion into the oceans is becoming more orthodox, we have
 largely overlooked Earth’s oceans as space for human habitat. Here, we
 build on the case for humanity’s future over the marine environment and
 discuss how exploring this frontier will result in advances for
 industries, economies, and exploration. The “Blue
 Acceleration” could transform the nascent phenomenon of marine
 cities into reality, and we support this notions with a global marine
 spatial plan to assess the suitability of marine settlements. Our analysis
 shows that every oceanic basin supports regions for sustainable human
 settlements. More broadly, we discuss the implications of a human-marine
 frontier and the benefits that will ensue for science, humanity and our
 planet. Finally, we argue that the human-marine frontier should be an
 immediate steppingstone for future exploration, innovation and discovery.
description: All the data has been converted to netcdf or GeoTiFF files, and
 the script for processing and modelling the data is available at:
 https://github.com/StanleyMastrantonis/Marine-Settlements
description: See https://github.com/StanleyMastrantonis/Marine-Settlements for
 the R script.
DOI: 10.5061/dryad.02v6wwq1n
title: Structural implications of traditional agricultural landscapes on the functional diversity of birds near the Korean Demilitarized Zone

description: Bird assemblages are sensitive to changes in landscape composition and the
 environment, such as those that result from drought. In this study, the
 relationship between landscape composition and avian functional diversity
 in traditional agricultural ecosystems in the Civilian Control Zone (CCZ)
 of Korea was examined. In addition, the resilience of biodiversity to
 changes in landscape elements resulting from drought conditions was
 investigated. The traditional agricultural landscape (TAL) of the sites
 studied was divided into three types: TAL 1 had a high proportion of rice
 paddies, TAL 2 included large forest areas, and TAL 3 represented areas
 with drylands. Of these, TAL 1 showed the highest species richness and
 functional richness, but these measures were most vulnerable to drought.
 Meanwhile, TAL 2 showed that the bird communities were more tolerant under
 drought event. This study shows that to conserve and enhance the diversity
 of birds in traditional agricultural landscapes of Northeast Asia, active
 management of forest areas is needed to protect bird populations. In
 addition, commercial pressures to develop this area will require urgent
 biodiversity conservation plans to protect the unique biodiversity of the
 Korean CCZ. This study thus provides landscape management guidance for
 conservation planning.Bird assemblages are sensitive to changes in
 landscape composition and the environment, such as those that result from
 drought. In this study, the relationship between landscape composition and
 avian functional diversity in traditional agricultural ecosystems in the
 Civilian Control Zone (CCZ) of Korea was examined. In addition, the
 resilience of biodiversity to changes in landscape elements resulting from
 drought conditions was investigated. The traditional agricultural
 landscape (TAL) of the sites studied was divided into three types: TAL 1
 had a high proportion of rice paddies, TAL 2 included large forest areas,
 and TAL 3 represented areas with drylands. Of these, TAL 1 showed the
 highest species richness and functional richness, but these measures were
 most vulnerable to drought. Meanwhile, TAL 2 showed that
 the bird communities were more tolerant under drought
 event. This study shows that to conserve and enhance the
 diversity of birds in traditional agricultural landscapes of Northeast
 Asia, active management of forest areas is needed to protect bird
 populations. In addition, commercial pressures to develop this area will
 require urgent biodiversity conservation plans to protect the unique
 biodiversity of the Korean CCZ. This study thus provides landscape
 management guidance for conservation planning.
DOI: 10.5061/dryad.v15dv41tr
title: Data for: Social rank and not physiological capacity determines competitive success in zebrafish (Danio rerio)

description: Competition for resources shapes ecological and evolutionary
 relationships. Physiological capacities such as in locomotor performance
 can influence the fitness of individuals by increasing competitive
 success. Social hierarchy too can affect outcomes of competition by
 altering locomotor behaviour or because higher-ranking individuals
 monopolise resources. Here we tested the alternative hypotheses that
 competitive success is determined by sprint performance or by social
 status. We show that sprint performance of individuals measured during
 escape responses (fast start) or in an accelerated sprint test did not
 correlate with realised sprint speed while competing for food within a
 social group of five fish; fast start and accelerated sprint speed were
 higher than realised speed. Social status within the group was the best
 predictor of competitive success, followed by realised speed. Social
 hierarchies in zebrafish are established within seven days and,
 interestingly, there was a positive correlation between social status and
 realised speed one and four days after fish were placed in a group, but
 not after seven days. These data indicate that physiological performance
 decreases in importance as social relationships are established. Also,
 maximal physiological capacities were not important for competitive
 success, but swimming speed changed with social context.
DOI: 10.15468/dl.d5bw7w
title: Occurrence Download

description: A dataset containing 4984763 species occurrences available in GBIF matching the query:
{
 "and" : [
 "KingdomKey is Plantae",
 "Country is Colombia",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Human Observation, Machine Observation)"
 ]
}

 The dataset includes 4984763 records from 1322 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002545-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29128016.v3
title: Structural Classification of Unclassified PFAS using Molecular Fingerprints and Graph Networks

description: This project provides a network-based structural classification resource for 13,028 per- and polyfluoroalkyl substances (PFAS) from the U.S. EPA’s 2024 PFAS8a7v3 list. Using eight molecular fingerprinting methods and K-Nearest Neighbor Graphs (K-NNGs), we assign Proximity Classes to 288 previously unclassified PFAS compounds. The dataset includes Proximity Class outputs, UMAP coordinates, edge lists, and interactive 3D network visualizations across multiple neighborhood sizes. All files are designed for reuse in regulatory prioritization, chemical substitution, and machine learning applications.
DOI: 10.2908/aei_ps_inp
title: Landwirtschaftliche Nutzfläche verwaltet von landwirtschaftlichen Betrieben mit niedrigem, mittlerem und hohem Input
title: Utilised agricultural area (UAA) managed by low-, medium- and high-input farms
title: Surface agricole utilisée (SAU) gérée par des fermes à faible, moyen et haut input
DOI: 10.5281/zenodo.15471722
title: Portable-XRF data of coastal sand

description: Portable-XRF data of coastal sand from Ria de Vigo, Spain
DOI: 10.5281/zenodo.15471723
title: Portable-XRF data of coastal sand

description: Portable-XRF data of coastal sand from Ria de Vigo, Spain
DOI: 10.15468/dl.pbcebg
title: Occurrence Download

description: A dataset containing 36448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces Waksman & Henrici, 1943"
 ]
}

 The dataset includes 36448 records from 425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016154-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qpbkqp
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Myrciaria amazonica",
 "Year 1970-2025"
 ]
}

 The dataset includes 13 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033442-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2jkg2p
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is N2000 FR5212009 ZPS et FR5200653 ZSC Marais Breton, baie de Bourgneuf, île de Noirmoutier et forêt de monts : suivi du site-Suivi 2022 des Gravelot à collier interrompu nicheurs sur les plages sableuses du site Natura 2000 \"Marais breton, baie de Bourgneuf, île de Noirmoutier et forêt de Monts\""
 ]
}

 The dataset includes 35 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033439-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6gthd
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "Geometry POLYGON((-82.24576 35.8522,-81.97289 35.79222,-81.84295 36.18181,-82.24589 36.14954,-82.24576 35.8522))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (March, April, May)",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombycilla cedrorum",
 "Year 2024-2025"
 ]
}

 The dataset includes 109 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033444-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xyupsn
title: Occurrence Download

description: A dataset containing 506 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-84.87934 32.08205,-81.60327 31.8141,-76.10265 34.07134,-76.10265 36.29584,-76.73822 39.02278,-83.08725 41.51922,-85.75756 37.56214,-86.10872 33.85005,-84.87934 32.08205))",
 "HasGeospatialIssue is false",
 "TaxonKey is Lasiurus borealis",
 "Year 2020-2025"
 ]
}

 The dataset includes 506 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033441-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/tiejrx
title: RİDSÖ

description: Buradaki veriler RİDSÖ'nün geçerlik ve güvenirlik çalışmasını içermektedir.
DOI: 10.15468/dl.4zsae7
title: Occurrence Download

description: A dataset containing 118 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Iran (Islamic Republic of)",
 "TaxonKey is Hordeum bulbosum"
 ]
}

 The dataset includes 118 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033445-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u8pbam
title: Occurrence Download

description: A dataset containing 499683 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Geometry POLYGON((87 26, 89 26, 89 27, 87 27, 87 26))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 499683 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033324-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z9hnhv
title: Occurrence Download

description: A dataset containing 455 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Echis ocellatus"
 ]
}

 The dataset includes 455 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033447-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/slc5yo
title: Replication Data for: Public Support for Pro-Environment and Environment-Critical Movements

description: The data and code in the files can be used to replicate all figures, tables, and analyses in "Public Support for Pro-Environment and Environment-Critical Movements". Some replication scripts will require additional steps. Please consult the README file for further instructions.