cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.35077/add-dud
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1041074452

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: cell in slice
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1041074452', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'1041074452', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'1041074452', Locations:'STG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.34740/kaggle/dsv/5529521
title: COVID Vaccination in World (updated daily)
DOI: 10.35077/add-dug
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1041081551

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: cell in slice
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1041081551', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'1041081551', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'1041081551', Locations:'STG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.35077/add-ear
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1049237275

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: cell in slice
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1049237275', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'1049237275', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'1049237275', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.35078/zanlmc
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Caratinga | Município: Jaguaraçu

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.35077/add-eat
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1058193059

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: cell in slice
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1058193059', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'1058193059', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'1058193059', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.15784/601682
title: Passive particle trajectories from Regional Ocean Modeling System simulations 2008-2009 & 2018-2019

description: This dataset contains passive particle trajectories from the Regional Ocean Modeling System (ROMS) in NETCDF format. Files include latitude, longitude, and depth of particles released along the West Antarctic Peninsula within the ROMS framework. Time frames and particle release depths are included in a .csv file. Data currently cover 4 austral summers: 2008, 2009, 2018, and 2019. Five different release depths were used across the 5 model years, for a total of 20 simulations.
DOI: 10.5517/ccdc.csd.cc1kh114
title: CCDC 1444415: Experimental Crystal Structure Determination

description: Related Article: Qinghe Liu, Chuanfa Ni, Qian Wang, Depei Meng, Jinbo Hu|2022|CCS Chem.|4|3648|doi:10.31635/ccschem.022.202101634
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1kh125
title: CCDC 1444416: Experimental Crystal Structure Determination

description: Related Article: Qinghe Liu, Chuanfa Ni, Qian Wang, Depei Meng, Jinbo Hu|2022|CCS Chem.|4|3648|doi:10.31635/ccschem.022.202101634
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1kh136
title: CCDC 1444417: Experimental Crystal Structure Determination

description: Related Article: Qinghe Liu, Chuanfa Ni, Qian Wang, Depei Meng, Jinbo Hu|2022|CCS Chem.|4|3648|doi:10.31635/ccschem.022.202101634
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28zx39
title: CCDC 2115071: Experimental Crystal Structure Determination

description: Related Article: Bernhard Wölfl, Nils Winter, Jiajing Li, Adam Noble, Varinder K. Aggarwal|2023|Angew.Chem.,Int.Ed.|62|e202217064|doi:10.1002/anie.202217064
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.35077/add-eel
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1060105621

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: cell in slice
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1060105621', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'1060105621', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'1060105621', Locations:'ParL' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.35078/3stdyk
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Diamantina| Município: Ibirité

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.35077/add-egg
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1060169142

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: cell in slice
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1060169142', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'1060169142', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'1060169142', Locations:'ParL' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.35077/add-elf
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1061696800

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: cell in slice
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1061696800', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'1061696800', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'1061696800', Locations:'ParL' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.35077/add-elk
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1061720975

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: cell in slice
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1061720975', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'1061720975', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'1061720975', Locations:'ParL' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.35077/add-elm
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1067599469

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: cell in slice
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1067599469', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'1067599469', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'1067599469', Locations:'CgGr' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.6084/m9.figshare.22700128
title: Supplementary Material for: Optimal use of serum leucine-rich alpha-2 glycoprotein as a biomarker for small bowel lesions of Crohn's disease

description: Introduction A large proportion of small bowel lesions in Crohn’s disease (CD) may exist beyond the reach of ileocolonoscopy and there is no gold standard imaging modality to screen them, suggesting the need for optimal biomarkers. We aimed to compare the usefulness of C-reactive protein (CRP), faecal calprotectin (FC), and leucine-rich alpha-2 glycoprotein (LRG) in determining small bowel lesions of CD. Methods This was a cross-sectional observational study. CRP, FC, and LRG were prospectively measured in patients with quiescent CD who underwent imaging examinations (capsule or balloon-assisted endoscopy, magnetic resonance enterography, or intestinal ultrasound) selected by the physician in clinical practice. Mucosal healing (MH) of the small bowel was defined as a lack of ulcers. Patients with a Crohn’s disease activity index &gt; 150 and active colonic lesions were excluded. Results A total of 65 patients (27, MH; 38, small bowel inflammation) were analysed. The area under the curve (AUC) of CRP, FC, and LRG was 0.74 (95% confidence interval 0.61-0.87), 0.69 (0.52-0.81), and 0.77 (0.59-0.85), respectively. The AUC of FC and LRG in a subgroup of 61 patients with CRP &lt; 3 mg/l (26, MH; 32, small bowel inflammation) was 0.68 (0.50-0.81), and 0.74 (0.54-0.84), respectively. The cut-off of 16 μg/ml of LRG showed the highest positive predictive value of 1.00 with specificity of 1.00 while negative predictive value was highest (0.71) with sensitivity of 0.89 at the cut-off of 9 μg/ml. Discussion/Conclusion LRG can accurately detect and/or exclude the small bowel lesions by two cut-off values.
DOI: 10.6084/m9.figshare.22700128.v1
title: Supplementary Material for: Optimal use of serum leucine-rich alpha-2 glycoprotein as a biomarker for small bowel lesions of Crohn's disease

description: Introduction A large proportion of small bowel lesions in Crohn’s disease (CD) may exist beyond the reach of ileocolonoscopy and there is no gold standard imaging modality to screen them, suggesting the need for optimal biomarkers. We aimed to compare the usefulness of C-reactive protein (CRP), faecal calprotectin (FC), and leucine-rich alpha-2 glycoprotein (LRG) in determining small bowel lesions of CD. Methods This was a cross-sectional observational study. CRP, FC, and LRG were prospectively measured in patients with quiescent CD who underwent imaging examinations (capsule or balloon-assisted endoscopy, magnetic resonance enterography, or intestinal ultrasound) selected by the physician in clinical practice. Mucosal healing (MH) of the small bowel was defined as a lack of ulcers. Patients with a Crohn’s disease activity index &gt; 150 and active colonic lesions were excluded. Results A total of 65 patients (27, MH; 38, small bowel inflammation) were analysed. The area under the curve (AUC) of CRP, FC, and LRG was 0.74 (95% confidence interval 0.61-0.87), 0.69 (0.52-0.81), and 0.77 (0.59-0.85), respectively. The AUC of FC and LRG in a subgroup of 61 patients with CRP &lt; 3 mg/l (26, MH; 32, small bowel inflammation) was 0.68 (0.50-0.81), and 0.74 (0.54-0.84), respectively. The cut-off of 16 μg/ml of LRG showed the highest positive predictive value of 1.00 with specificity of 1.00 while negative predictive value was highest (0.71) with sensitivity of 0.89 at the cut-off of 9 μg/ml. Discussion/Conclusion LRG can accurately detect and/or exclude the small bowel lesions by two cut-off values.
DOI: 10.6084/m9.figshare.22700134
title: Supplementary Material for: Optimal use of serum leucine-rich alpha-2 glycoprotein as a biomarker for small bowel lesions of Crohn's disease

description: Introduction A large proportion of small bowel lesions in Crohn’s disease (CD) may exist beyond the reach of ileocolonoscopy and there is no gold standard imaging modality to screen them, suggesting the need for optimal biomarkers. We aimed to compare the usefulness of C-reactive protein (CRP), faecal calprotectin (FC), and leucine-rich alpha-2 glycoprotein (LRG) in determining small bowel lesions of CD. Methods This was a cross-sectional observational study. CRP, FC, and LRG were prospectively measured in patients with quiescent CD who underwent imaging examinations (capsule or balloon-assisted endoscopy, magnetic resonance enterography, or intestinal ultrasound) selected by the physician in clinical practice. Mucosal healing (MH) of the small bowel was defined as a lack of ulcers. Patients with a Crohn’s disease activity index &gt; 150 and active colonic lesions were excluded. Results A total of 65 patients (27, MH; 38, small bowel inflammation) were analysed. The area under the curve (AUC) of CRP, FC, and LRG was 0.74 (95% confidence interval 0.61-0.87), 0.69 (0.52-0.81), and 0.77 (0.59-0.85), respectively. The AUC of FC and LRG in a subgroup of 61 patients with CRP &lt; 3 mg/l (26, MH; 32, small bowel inflammation) was 0.68 (0.50-0.81), and 0.74 (0.54-0.84), respectively. The cut-off of 16 μg/ml of LRG showed the highest positive predictive value of 1.00 with specificity of 1.00 while negative predictive value was highest (0.71) with sensitivity of 0.89 at the cut-off of 9 μg/ml. Discussion/Conclusion LRG can accurately detect and/or exclude the small bowel lesions by two cut-off values.