cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26030/hm9t-1p26
title: Biological response to low dose of alpha-particles in a human 3-dimensional skin model, in 1 and 16h after exposure to ionizing radiation.

description: Direct irradiation of 3-dimensional skin model, Epi-200, with alpha-particles led to differential regulation of 166 genes: 16 and 150 genes were differentially expressed at 1 and 16 h postirradiation. Unlike the traditional 2-dimensional in vitro systems, Epi-200 made of the primary cells, epidermal human keratinocytes. It mimics the structure of the human epidermis Global gene expression is a powerful tool for uncovering both fundamental signaling processes and the mechanistic basis of cellular or physiological effects. By comparing irradiated tissues with non-irradiated control, we have been able to measure global gene expression responses and reveal the affected biological pathways and molecular functions. The data were analyzed using BRB-Array Tools (NIH), and further gene ontology analysis was performed with Panther database (Applied Biosystems). Gene ontology analysis of the samples harvested in 16h after exposure showed that irradiation presumably affected the genes involved in cell-cell signaling (15 genes, , p=9.0 x E-04) ion transport (10 genes, p=0.00189) and amino acid metabolism (5 genes, p=0.0258). Among 16 genes differentially expressed in 1h after exposure we found NOTCH2 (ENST00000401649) and methyltransferase AOF1 (KDM1B). In the mammalian cells, NOTCH signaling pathway has a role in differentiation and intracellular communication. Moreover the intercellular domain of NOTCH regulates gene expression acting as a transcription factor. In turn, AOF1 affects the transcription via histone demethylation. Thus, irradiation with alpha-particles caused predominant downregulation of multiple genes in 1 and 16h after exposure. It also suggested that changes in cell metabolism initially affected transcriptional regulation and finally led to the rearrangement in expression of genes playing a role in biosynthesis and ion trafficking. Radiation induced gene expression in 3-dimensional tissue model, Epi-200, was measured in 1 and 16 h hours after exposure to 0.5 Gy of alpha-particles. Three independent experiments were performed using one tissue sample per a data point.
DOI: 10.26187/deakin.26264372
title: R code for Driscoll et al 2024 Nature.R

description: This is the code used to complete the analysis in the paper. The code can be run from section 2 using one of the associated .csv datasets. You will need to adjust the file paths and some other settings in the code before you run it which is explained in the #code notes.
DOI: 10.26187/deakin.26264372.v1
title: R code for Driscoll et al 2024 Nature.R

description: This is the code used to complete the analysis in the paper. The code can be run from section 2 using one of the associated .csv datasets. You will need to adjust the file paths and some other settings in the code before you run it which is explained in the #code notes.
DOI: 10.15468/dl.ws7mpp
title: Occurrence Download

description: A dataset containing 4296 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tlalocohyla smithii (Boulenger, 1902)"
 ]
}

 The dataset includes 4296 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001149-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5kfuuv
title: Occurrence Download

description: A dataset listing the 34 species recorded in GBIF matching the query:
{
 "and" : [
 "Year is 2010",
 "TaxonKey is Litoria Tschudi, 1838"
 ]
}

 The dataset's 34 records were derived from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001140-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6yzm5
title: Occurrence Download

description: A dataset containing 10320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "DatasetKey is EOD – eBird Observation Dataset",
 "OccurrenceStatus is Present",
 "TaxonKey is Poecile montanus (Conrad von Baldenstein, 1827)",
 "Year 2003-2023"
 ]
}

 The dataset includes 10320 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001150-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jnj3yw
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year is 1900",
 "TaxonKey is Vulpes vulpes (Linnaeus, 1758)"
 ]
}

 The dataset includes 65 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001151-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fh86v7
title: Occurrence Download

description: A dataset containing 177399 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((114.0344 22.2293, 114.2835 22.2293, 114.2835 22.39593, 114.0344 22.39593, 114.0344 22.2293))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 177399 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001138-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fxzcrt
title: Occurrence Download

description: A dataset containing 413272 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is DATAVES"
 ]
}

 The dataset includes 413272 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001133-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xt7wwy
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((120.3175 31.76717, 120.6186 31.76717, 120.6186 32.00816, 120.3175 32.00816, 120.3175 31.76717))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 139 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001153-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ue7ny6
title: Occurrence Download

description: A dataset listing the 7 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((26.77494 -27.97891,26.92743 -27.98166,26.91701 -27.83355,26.77 -27.833,26.77494 -27.97891))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (DD, NT, VU, EN, CR, EW, EX)",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset's 7 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001144-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c55t3gb6n
title: MassIVE MSV000096334 - Global TMT proteomics of Nb-ncS1 transfected HEK293FT cells
title: Global TMT proteomics of Nb-ncS1 transfected HEK293FT cells
DOI: 10.15468/dl.u8v53e
title: Occurrence Download

description: A dataset containing 395 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salvia oppositiflora Ruiz & Pav."
 ]
}

 The dataset includes 395 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001154-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14053032
title: Shudy Camps Cemetery GeoPackage
DOI: 10.5281/zenodo.14053033
title: Shudy Camps Cemetery GeoPackage
DOI: 10.15468/dl.92d626
title: Occurrence Download

description: A dataset containing 78000 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((114.1334 22.42927, 114.2257 22.42927, 114.2257 22.47928, 114.1334 22.47928, 114.1334 22.42927))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 78000 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001156-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.88d6n6
title: Occurrence Download

description: A dataset containing 714 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Abildgaardia ovata (Burm.f.) Kral",
 "Continent is Africa"
 ]
}

 The dataset includes 714 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001158-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.er3rwt
title: Occurrence Download

description: A dataset containing 1485 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tlalocohyla picta (Günther, 1901)"
 ]
}

 The dataset includes 1485 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001157-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sta78w
title: Occurrence Download

description: A dataset containing 555 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acroceras macrum Stapf",
 "Continent is Africa"
 ]
}

 The dataset includes 555 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001159-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8zx83z
title: Occurrence Download

description: A dataset containing 199 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Adenochloa adenophora (K.Schum.) Zuloaga",
 "Continent is Africa"
 ]
}

 The dataset includes 199 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001161-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ksfjp3
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-86.86513 42.63683,-83.13432 42.09219,-82.35366 44.53401,-83.52465 45.65961,-85.40367 45.94101,-86.51111 45.24205,-86.86513 42.63683))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cypripedium arietinum R.Br."
 ]
}

 The dataset includes 89 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001162-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w6ydx3
title: Occurrence Download

description: A dataset containing 70370 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((120.094 31.06275, 121.1014 31.06275, 121.1014 31.72416, 120.094 31.72416, 120.094 31.06275))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 70370 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001160-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7eqnng
title: Occurrence Download

description: A dataset containing 1140 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Afzelia quanzensis Welw.",
 "Continent is Africa"
 ]
}

 The dataset includes 1140 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001163-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5gh8e8
title: Occurrence Download

description: A dataset containing 1256 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((114.2098 22.53763, 114.296 22.53763, 114.296 22.60433, 114.2098 22.60433, 114.2098 22.53763))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 1256 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001164-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uxqe9m
title: Occurrence Download

description: A dataset containing 935635 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Saudi Arabia"
 ]
}

 The dataset includes 935635 records from 641 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001090-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5are8w
title: Occurrence Download

description: A dataset containing 253 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Andropogon abyssinicus R.Br. ex Fresen.",
 "Continent is Africa"
 ]
}

 The dataset includes 253 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001165-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nusp8r
title: Occurrence Download

description: A dataset containing 174 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((114.342 22.71275, 114.5062 22.71275, 114.5062 22.83788, 114.342 22.83788, 114.342 22.71275))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 174 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001167-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7mjc9u
title: Occurrence Download

description: A dataset containing 37797 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aristolochia elegans Mast., Brachiaria mutica (Forssk.) Stapf, Cenchrus macrourus (Trin.) Morrone, Cestrum thyrsoideum Kunth, Dipsacus sylvestris Huds., Echium fastuosum Aiton, Egeria densa Planch., Eichhornia crassipes (Mart.) Solms, Hyparrhenia dichroa (Steud.) Stapf, Limonium sinuatum (L.) Mill., Magnolia campbellii Hook.f. & Thomson, Meconopsis betonicifolia Franch., Paspalum paniculatum L., Salvia reflexa Hornem., Solanum tuberosum L., Taxus wallichiana Zucc., Trifolium hirtum All., Trigonella foenum-graecum L., Wedelia trilobata A.St.-Hil.)",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence, Material citation, Living Specimen)",
 "CoordinateUncertaintyInMeters is less than or equal to 10000",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 37797 records from 392 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001166-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z6dkpw
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leersia hexandra",
 "Country is Viet Nam",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018583-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gf9776
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron strigosum"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018584-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14466/cefasdatahub.183
title: Underway (Ferrybox) data collected in North West European Shelf waters from 2010 onwards

description: A 4H JENA Ferrybox system runs continuously on RV Cefas Endeavour during all surveys where appropriate since 2010, generating data across the North Sea, Irish Sea, and English Channel at a resolution of one measurement per minute. A continuous inflow is taken from a dedicated inlet and pump at approximately 4m under the waterline. Key parameters measured include sea surface temperature (SST), through a hull mounted temperature probe, salinity (SAL), chlorophyll fluorometry (FLUORS), turbidity (FTU), and Photosynthetically Active Radiation (PAR). Other parameters recorded include meteorological variables, oxygen concentrations, and measures of photosynthetic activity. New data is added annually.

Water passes through the hull inlet while Endeavour is underway, then enters a circuit which contains other instruments approximately three minutes later. Data is autonomously recorded by the Ferrybox system, by taking an average of sensors readings over a minute, and stored on the Ferrybox computer on board Cefas Endeavour. Data is transferred to central network drives upon the ships return to shore, and is backed up by an emailer module every 10 minutes while the ship is underway.

QA is completed on shore using a custom R script. GPS data is checked to remove errors, including automatic checks of speed, course, and location. A correction for flow lag is applied to sensors within the ferrybox pipework, and data recorded during acid washes and where flow rates were too high or low is flagged. All variables are checked for reasonable ranges and rates of change. Data is validated by comparisons against discrete samples in the case of salinity, and for temperature and fluorescence though comparison between different instruments measuring the same parameter (eg. hull temperature probe and in-circuit seabird temperature sensor). In-house calibrations are also used to correct for instrument drift. Suspended particulate matter is derived from turbidity (FTU) values using the relationship between discrete samples and turbidity measurements throughout the ferrybox series. Chlorophyll is derived by survey using the relationship between fluorescence and discrete samples taken, for surveys where no discrete sample is taken a generic relationship is used.

Only data which has passed all quality control checks is included in this product. This product includes data at both qc_level 2 and 3

qc_level 2 is where all of the above checks have been done, but offsets / corrections based on external reference material have not been applied.

At qc_level 3 where these corrections have been applied.
DOI: 10.15468/dl.w8r82w
title: Occurrence Download

description: A dataset containing 265 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Geothelphusa pingtung",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 265 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018585-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q9gf52
title: Occurrence Download

description: A dataset containing 847 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is A revision of the genus Malus Mill. (Rosaceae)"
 ]
}

 The dataset includes 847 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018586-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.necndc
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron sessilifolium"
 ]
}

 The dataset includes 64 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018587-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5224vy
title: Occurrence Download

description: A dataset containing 72770 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-6.35725 36.54399,-6.10915 36.07235,-5.43481 35.93855,-5.03402 36.29315,-4.35968 36.53888,-4.68412 37.04832,-5.54932 37.31189,-6.19185 37.31189,-6.17913 36.75326,-6.35725 36.54399))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 72770 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018574-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13176791
title: World Weather Repository ( Daily Updating )