cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3777761_d5.v1
title: MOESM4 of Systematic analysis of the lysine acetylome reveals diverse functions of lysine acetylation in the oleaginous yeast Yarrowia lipolytica

description: Additional file 4: Table S3. Protein GO enrichment based on biological process.
DOI: 10.6084/m9.figshare.c.3777761_d5
title: MOESM4 of Systematic analysis of the lysine acetylome reveals diverse functions of lysine acetylation in the oleaginous yeast Yarrowia lipolytica

description: Additional file 4: Table S3. Protein GO enrichment based on biological process.
DOI: 10.6084/m9.figshare.c.3777761_d4.v1
title: MOESM3 of Systematic analysis of the lysine acetylome reveals diverse functions of lysine acetylation in the oleaginous yeast Yarrowia lipolytica

description: Additional file 3: Table S2. Protein GO enrichment based on molecular functions.
DOI: 10.6084/m9.figshare.c.3777761_d3.v1
title: MOESM2 of Systematic analysis of the lysine acetylome reveals diverse functions of lysine acetylation in the oleaginous yeast Yarrowia lipolytica

description: Additional file 2: Table S1. The identified acetylated sites in Y. lipolytica.
DOI: 10.6084/m9.figshare.c.3777761_d4
title: MOESM3 of Systematic analysis of the lysine acetylome reveals diverse functions of lysine acetylation in the oleaginous yeast Yarrowia lipolytica

description: Additional file 3: Table S2. Protein GO enrichment based on molecular functions.
DOI: 10.6084/m9.figshare.c.3777761_d3
title: MOESM2 of Systematic analysis of the lysine acetylome reveals diverse functions of lysine acetylation in the oleaginous yeast Yarrowia lipolytica

description: Additional file 2: Table S1. The identified acetylated sites in Y. lipolytica.
DOI: 10.6084/m9.figshare.c.3776477_d14.v1
title: Additional file 9: of Integrated mRNA and microRNA transcriptome variations in the multi-tepal mutant provide insights into the floral patterning of the orchid Cymbidium goeringii

description: Distribution of the conserved miRNA families in Cymbidium goeringii ‘Songmei’ (WT) and the multi-tepal mutant ‘Yuhudie’ (Mu). (XLS 46 kb)
DOI: 10.6084/m9.figshare.c.3776477_d14
title: Additional file 9: of Integrated mRNA and microRNA transcriptome variations in the multi-tepal mutant provide insights into the floral patterning of the orchid Cymbidium goeringii

description: Distribution of the conserved miRNA families in Cymbidium goeringii ‘Songmei’ (WT) and the multi-tepal mutant ‘Yuhudie’ (Mu). (XLS 46 kb)
DOI: 10.6084/m9.figshare.c.3776477_d12.v1
title: Additional file 7: of Integrated mRNA and microRNA transcriptome variations in the multi-tepal mutant provide insights into the floral patterning of the orchid Cymbidium goeringii

description: Gene ID and fold changes of the unigenes involved in plant hormone signal transduction pathway annotated by KEGG pathway. (XLS 42Â kb)
DOI: 10.6084/m9.figshare.c.3776477_d12
title: Additional file 7: of Integrated mRNA and microRNA transcriptome variations in the multi-tepal mutant provide insights into the floral patterning of the orchid Cymbidium goeringii

description: Gene ID and fold changes of the unigenes involved in plant hormone signal transduction pathway annotated by KEGG pathway. (XLS 42Â kb)
DOI: 10.6084/m9.figshare.c.3776477_d11.v1
title: Additional file 6: of Integrated mRNA and microRNA transcriptome variations in the multi-tepal mutant provide insights into the floral patterning of the orchid Cymbidium goeringii

description: A total of 110 MADS-box genes in C. goeringii. (XLS 163Â kb)
DOI: 10.6084/m9.figshare.c.3776477_d11
title: Additional file 6: of Integrated mRNA and microRNA transcriptome variations in the multi-tepal mutant provide insights into the floral patterning of the orchid Cymbidium goeringii

description: A total of 110 MADS-box genes in C. goeringii. (XLS 163Â kb)
DOI: 10.6084/m9.figshare.c.3776477_d10.v1
title: Additional file 5: of Integrated mRNA and microRNA transcriptome variations in the multi-tepal mutant provide insights into the floral patterning of the orchid Cymbidium goeringii

description: DEG-enrichment analysis by KEGG metabolic pathway classification. (XLS 619Â kb)
DOI: 10.6084/m9.figshare.c.3776477_d10
title: Additional file 5: of Integrated mRNA and microRNA transcriptome variations in the multi-tepal mutant provide insights into the floral patterning of the orchid Cymbidium goeringii

description: DEG-enrichment analysis by KEGG metabolic pathway classification. (XLS 619Â kb)
DOI: 10.5281/zenodo.14498296
title: Data For "Naturally occurring variation in a cytochrome P450 modifies thiabendazole responses independently of beta-tubulin"

description: Large data files associated with Collins et al. Plos Pathogens "Naturally occurring variation in a cytochrome P450 modifies thiabendazole responses independently of beta-tubulin"
DOI: 10.5281/zenodo.14498297
title: Data For "Naturally occurring variation in a cytochrome P450 modifies thiabendazole responses independently of beta-tubulin"

description: Large data files associated with Collins et al. Plos Pathogens "Naturally occurring variation in a cytochrome P450 modifies thiabendazole responses independently of beta-tubulin"
DOI: 10.6084/m9.figshare.c.3776477_d4.v1
title: Additional file 13: of Integrated mRNA and microRNA transcriptome variations in the multi-tepal mutant provide insights into the floral patterning of the orchid Cymbidium goeringii

description: Gene ID and fold changes of the unigenes regulating floral homeotic genes and floral patterning (XLS 43Â kb)
DOI: 10.6084/m9.figshare.c.3776477_d4
title: Additional file 13: of Integrated mRNA and microRNA transcriptome variations in the multi-tepal mutant provide insights into the floral patterning of the orchid Cymbidium goeringii

description: Gene ID and fold changes of the unigenes regulating floral homeotic genes and floral patterning (XLS 43Â kb)
DOI: 10.15468/dl.thsr9n
title: Occurrence Download

description: A dataset containing 428 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sebastes inermis Cuvier, 1829",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 428 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035475-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3776483_d1.v1
title: Additional file 1: of HN1 contributes to migration, invasion, and tumorigenesis of breast cancer by enhancing MYC activity

description: Fresh human tissue samples including 12 breast cancer tissues and 4 normal mammary tissues. (XLSX 17.3 kb)
DOI: 10.6084/m9.figshare.c.3776483_d1
title: Additional file 1: of HN1 contributes to migration, invasion, and tumorigenesis of breast cancer by enhancing MYC activity

description: Fresh human tissue samples including 12 breast cancer tissues and 4 normal mammary tissues. (XLSX 17.3 kb)
DOI: 10.6084/m9.figshare.c.3776477_d2
title: Additional file 11 of Integrated mRNA and microRNA transcriptome variations in the multi-tepal mutant provide insights into the floral patterning of the orchid Cymbidium goeringii

description: Predicted miRNA target genes involved in floral development/flowering time. (XLS 79Â kb)
DOI: 10.6084/m9.figshare.c.3776477_d2.v1
title: Additional file 11 of Integrated mRNA and microRNA transcriptome variations in the multi-tepal mutant provide insights into the floral patterning of the orchid Cymbidium goeringii

description: Predicted miRNA target genes involved in floral development/flowering time. (XLS 79Â kb)
DOI: 10.6084/m9.figshare.c.3776477_d1.v1
title: Additional file 10: of Integrated mRNA and microRNA transcriptome variations in the multi-tepal mutant provide insights into the floral patterning of the orchid Cymbidium goeringii

description: putative target genes of the conserved miRNAs predicted in this study. (XLS 403Â kb)
DOI: 10.6084/m9.figshare.c.3776477_d1
title: Additional file 10: of Integrated mRNA and microRNA transcriptome variations in the multi-tepal mutant provide insights into the floral patterning of the orchid Cymbidium goeringii

description: putative target genes of the conserved miRNAs predicted in this study. (XLS 403Â kb)
DOI: 10.6084/m9.figshare.c.3775304_d4.v1
title: MOESM4 of An integrated proteomic and glycoproteomic approach uncovers differences in glycosylation occupancy from benign and malignant epithelial ovarian tumors

description: Additional file 4: Table S4. Glycosite-containing peptides identified from glycoproteomic analysis from additional 2 benign and 2 HGSC tissues in iTRAQ .
DOI: 10.6084/m9.figshare.c.3775304_d3.v1
title: MOESM3 of An integrated proteomic and glycoproteomic approach uncovers differences in glycosylation occupancy from benign and malignant epithelial ovarian tumors

description: Additional file 3: Table S3. Proteomic analysis from additional 2 benign and 2 HGSC tissues in iTRAQ experiment 2.
DOI: 10.6084/m9.figshare.c.3775304_d4
title: MOESM4 of An integrated proteomic and glycoproteomic approach uncovers differences in glycosylation occupancy from benign and malignant epithelial ovarian tumors

description: Additional file 4: Table S4. Glycosite-containing peptides identified from glycoproteomic analysis from additional 2 benign and 2 HGSC tissues in iTRAQ .
DOI: 10.6084/m9.figshare.c.3775304_d3
title: MOESM3 of An integrated proteomic and glycoproteomic approach uncovers differences in glycosylation occupancy from benign and malignant epithelial ovarian tumors

description: Additional file 3: Table S3. Proteomic analysis from additional 2 benign and 2 HGSC tissues in iTRAQ experiment 2.
DOI: 10.6084/m9.figshare.c.3775304_d2
title: MOESM2 of An integrated proteomic and glycoproteomic approach uncovers differences in glycosylation occupancy from benign and malignant epithelial ovarian tumors

description: Additional file 2: Table S2. Glycosite-containing peptides identified from glycoproteomic analysis from benign and HGSC tissues in iTRAQ experiment 1.
DOI: 10.6084/m9.figshare.c.3775304_d2.v1
title: MOESM2 of An integrated proteomic and glycoproteomic approach uncovers differences in glycosylation occupancy from benign and malignant epithelial ovarian tumors

description: Additional file 2: Table S2. Glycosite-containing peptides identified from glycoproteomic analysis from benign and HGSC tissues in iTRAQ experiment 1.
DOI: 10.6084/m9.figshare.c.3775304_d1.v1
title: MOESM1 of An integrated proteomic and glycoproteomic approach uncovers differences in glycosylation occupancy from benign and malignant epithelial ovarian tumors

description: Additional file 1: Table S1. Global proteomic analysis of ovarian tissue proteins from the first iTRAQ experiment.
DOI: 10.15468/dl.hky7nz
title: Occurrence Download

description: A dataset containing 15340 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-74.09669 4.69291,-74.09434 4.69147,-74.09187 4.69509,-74.09404 4.69681,-74.09669 4.69291))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 15340 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035476-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3775304_d1
title: MOESM1 of An integrated proteomic and glycoproteomic approach uncovers differences in glycosylation occupancy from benign and malignant epithelial ovarian tumors

description: Additional file 1: Table S1. Global proteomic analysis of ovarian tissue proteins from the first iTRAQ experiment.
DOI: 10.6084/m9.figshare.c.3774317_d1
title: Additional file 1: Figure S5a. of Effect of Limbal relaxing incisions during implantable collamer lens surgery

description: Corneal astigmatism distribution in 2 groups preoperatively. Figure S5b. Corneal astigmatism distribution in 2 group 1 month postoperatively. (ZIP 20 kb)
DOI: 10.6084/m9.figshare.c.3774311_d5.v1
title: Additional file 5: of Inferring miRNA sponge co-regulation of protein-protein interactions in human breast cancer

description: BRCA-related miRSCoPPI sub-network in Module 5. The BRCA-related miRSCoPPI sub-network consists of 5075 miRNA sponge interactions, 718 PPIs and 46 lncRNA-target interactions. (XLSX 96Â kb)
DOI: 10.6084/m9.figshare.c.3774311_d6.v1
title: Additional file 6: of Inferring miRNA sponge co-regulation of protein-protein interactions in human breast cancer

description: Experimentally validated miRNA sponge interactions. The number of experimentally validated miRNA sponge interactions is 99. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3774311_d6
title: Additional file 6: of Inferring miRNA sponge co-regulation of protein-protein interactions in human breast cancer

description: Experimentally validated miRNA sponge interactions. The number of experimentally validated miRNA sponge interactions is 99. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3774311_d4.v1
title: Additional file 4: of Inferring miRNA sponge co-regulation of protein-protein interactions in human breast cancer

description: BRCA-related miRSCoPPI modules. For the experimentally validated miRNA-target interactions, 17 BRCA-related miRSCoPPI modules are discovered. Thirty BRCA-related miRSCoPPI modules are discovered for the putative computationally predictive miRNA-target interactions. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.c.3774311_d5
title: Additional file 5: of Inferring miRNA sponge co-regulation of protein-protein interactions in human breast cancer

description: BRCA-related miRSCoPPI sub-network in Module 5. The BRCA-related miRSCoPPI sub-network consists of 5075 miRNA sponge interactions, 718 PPIs and 46 lncRNA-target interactions. (XLSX 96Â kb)
DOI: 10.15468/dl.dfkbv8
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Minous quincarinatus (Fowler, 1943)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 44 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035477-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3774167_d3
title: Additional file 3: of Caspase-1 participates in apoptosis of salivary glands in Rhipicephalus haemaphysaloides

description: Q-PCR raw data files. (RAR 51 kb)
DOI: 10.6084/m9.figshare.c.3774167_d3.v1
title: Additional file 3: of Caspase-1 participates in apoptosis of salivary glands in Rhipicephalus haemaphysaloides

description: Q-PCR raw data files. (RAR 51 kb)
DOI: 10.6084/m9.figshare.c.3772133_d2.v1
title: Additional file 2: of WebGIVI: a web-based gene enrichment analysis and visualization tool

description: NCBI Entrez IDs for Comparison of WebGIVI, DAVID and AmiGO2. This file contains NCBI gene Entrez ID list which is identifed by WebGIVI, DAVID and AmiGO2 to be associated with the concept of cell cycle regulation. (TXT 1 kb)
DOI: 10.6084/m9.figshare.c.3772133_d2
title: Additional file 2: of WebGIVI: a web-based gene enrichment analysis and visualization tool

description: NCBI Entrez IDs for Comparison of WebGIVI, DAVID and AmiGO2. This file contains NCBI gene Entrez ID list which is identifed by WebGIVI, DAVID and AmiGO2 to be associated with the concept of cell cycle regulation. (TXT 1 kb)
DOI: 10.6084/m9.figshare.c.3772133_d1
title: Additional file 1: of WebGIVI: a web-based gene enrichment analysis and visualization tool

description: NCBI Gene Entrez ID List for the Case Scenario. This file contains NCBI gene Entrez ID list. The first column is Entrez ID, and the second column is the gene symbol. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3772133_d1.v1
title: Additional file 1: of WebGIVI: a web-based gene enrichment analysis and visualization tool

description: NCBI Gene Entrez ID List for the Case Scenario. This file contains NCBI gene Entrez ID list. The first column is Entrez ID, and the second column is the gene symbol. (XLSX 9 kb)
DOI: 10.15468/dl.y4k79q
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fistularia petimba Lacepède, 1803",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 145 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035478-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3770840_d1.v1
title: MOESM1 of Metabolomics approach reveals annual metabolic variation in roots of Cyathula officinalis Kuan based on gas chromatographyâ  mass spectrum

description: Additional file 1. The dataset composed by all metabolite peak area values of 32 samples.
DOI: 10.6084/m9.figshare.c.3770840_d1
title: MOESM1 of Metabolomics approach reveals annual metabolic variation in roots of Cyathula officinalis Kuan based on gas chromatographyâ  mass spectrum

description: Additional file 1. The dataset composed by all metabolite peak area values of 32 samples.
DOI: 10.6084/m9.figshare.c.3770810_d2.v1
title: Additional file 2: Table S2. of Clinical association analysis of ependymomas and pilocytic astrocytomas reveals elevated FGFR3 and FGFR1 expression in aggressive ependymomas

description: Description of data: Overview of targeted sequencing cohort and the obtained results. (XLSX 101Â kb)
DOI: 10.6084/m9.figshare.c.3770810_d2
title: Additional file 2: Table S2. of Clinical association analysis of ependymomas and pilocytic astrocytomas reveals elevated FGFR3 and FGFR1 expression in aggressive ependymomas

description: Description of data: Overview of targeted sequencing cohort and the obtained results. (XLSX 101Â kb)
DOI: 10.6084/m9.figshare.c.3770750_d2
title: Additional file 2: of Detecting RNA-RNA interactions in E. coli using a modified CLASH method

description: List S1. List of interacting gene pairs detected in both this study and Watersâ  s study, including information of all reads mapped to these gene pairs. (TXT 28 kb)
DOI: 10.6084/m9.figshare.c.3769703_d1
title: Additional file 1: of Diagnostic value of endoscopic appearance during ductoscopy in patients with pathological nipple discharge

description: Detail data of malignant tumors. Description of form: It is the detail data of malignant tumors, which includes age range, duration, spontaneous, quadrants, depth, endoscopic description, pathologic description and so on. They are the base data for analyzation. (XLS 19Â kb)
DOI: 10.6084/m9.figshare.c.3769703_d1.v1
title: Additional file 1: of Diagnostic value of endoscopic appearance during ductoscopy in patients with pathological nipple discharge

description: Detail data of malignant tumors. Description of form: It is the detail data of malignant tumors, which includes age range, duration, spontaneous, quadrants, depth, endoscopic description, pathologic description and so on. They are the base data for analyzation. (XLS 19Â kb)
DOI: 10.15468/dl.zkafzc
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acetes japonicus Kishinouye, 1905",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 140 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035479-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3767609_d10
title: Additional file 9: of Transcriptome-wide N
                     
                6
              -methyladenosine methylome profiling of porcine muscle and adipose tissues reveals a potential mechanism for transcriptional regulation and differential methylation pattern

description: data 7. Different peaks related methylated genes among three breeds. (XLS 1836Â kb)
DOI: 10.6084/m9.figshare.c.3767609_d9
title: Additional file 8: of Transcriptome-wide N
                     
                6
              -methyladenosine methylome profiling of porcine muscle and adipose tissues reveals a potential mechanism for transcriptional regulation and differential methylation pattern

description: data 6. m6A peaks and related genes in among three breeds. (XLSX 2851Â kb)
DOI: 10.6084/m9.figshare.c.3767609_d9.v1
title: Additional file 8: of Transcriptome-wide N
                     
                6
              -methyladenosine methylome profiling of porcine muscle and adipose tissues reveals a potential mechanism for transcriptional regulation and differential methylation pattern

description: data 6. m6A peaks and related genes in among three breeds. (XLSX 2851Â kb)
DOI: 10.6084/m9.figshare.c.3767609_d8
title: Additional file 7: of Transcriptome-wide N
                     
                6
              -methyladenosine methylome profiling of porcine muscle and adipose tissues reveals a potential mechanism for transcriptional regulation and differential methylation pattern

description: data 5. Go analysis of tissue-differentially methylated genes. (XLS 1292Â kb)
DOI: 10.6084/m9.figshare.c.3767609_d7
title: Additional file 6: of Transcriptome-wide N
                     
                6
              -methyladenosine methylome profiling of porcine muscle and adipose tissues reveals a potential mechanism for transcriptional regulation and differential methylation pattern

description: data 4. Different peaks related methylated genes in muscle and adipose tissues. (XLS 2947Â kb)
DOI: 10.6084/m9.figshare.c.3767609_d6
title: Additional file 5: of Transcriptome-wide N
                     
                6
              -methyladenosine methylome profiling of porcine muscle and adipose tissues reveals a potential mechanism for transcriptional regulation and differential methylation pattern

description: data 3. Nucleus-related genes in PeakStop and GO enrichment. (XLS 1428Â kb)
DOI: 10.6084/m9.figshare.c.3767609_d5.v1
title: Additional file 4: of Transcriptome-wide N
                     
                6
              -methyladenosine methylome profiling of porcine muscle and adipose tissues reveals a potential mechanism for transcriptional regulation and differential methylation pattern

description: data 2. Common m6A peaks in both muscle and adipose tissues, related genes and GO enrichment. (XLS 1971Â kb)
DOI: 10.6084/m9.figshare.c.3767609_d5
title: Additional file 4: of Transcriptome-wide N
                     
                6
              -methyladenosine methylome profiling of porcine muscle and adipose tissues reveals a potential mechanism for transcriptional regulation and differential methylation pattern

description: data 2. Common m6A peaks in both muscle and adipose tissues, related genes and GO enrichment. (XLS 1971Â kb)
DOI: 10.6084/m9.figshare.c.3767597_d3
title: Additional file 3: of Identification and profiling of Cyprinus carpio microRNAs during ovary differentiation by deep sequencing

description: Existing carp miRNAs predicted from the five development stages of Yellow River carp. (XLS 16Â kb)
DOI: 10.6084/m9.figshare.c.3767597_d2.v1
title: Additional file 2: of Identification and profiling of Cyprinus carpio microRNAs during ovary differentiation by deep sequencing

description: Conserved miRNAs identified from the five development stages of Yellow River carp. (XLS 159Â kb)
DOI: 10.6084/m9.figshare.c.3767597_d2
title: Additional file 2: of Identification and profiling of Cyprinus carpio microRNAs during ovary differentiation by deep sequencing

description: Conserved miRNAs identified from the five development stages of Yellow River carp. (XLS 159Â kb)