cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.1211630
title: Characterization And Simulation Data Of Cylindrical, Elliptical, Parabolic, Conical And Root-Like Tips With Diameters In Sandy Loam Soil

description: Plants use many strategies to move efficiently in soil, such as growth from the tip, tropic movements, and morphological changes. In this paper, we propose a method to translate morphological features of <em>Zea mays</em> roots into a new design of soft robots that will be able to move in soil. The method relies on image processing and curve fitting techniques to extract the profile of <em>Z</em>. <em>mays</em> primary root. We implemented an analytic translation of the root profile in a 3D model (CAD) to fabricate root-like probes by means of 3D printing technology. Then, we carried out a comparative analysis among the artificial root-like probe and probes with different tip shapes (cylindrical, conical, elliptical, and parabolic) and diameters (11, 9, 7, 5, and 3 mm). The results showed that the energy consumption and the penetration force of the bioinspired probe are better with respect to the other shapes for all the diameters of the developed probes. For 100 mm of penetration depth and 7 mm of probe diameter, the energy consumption of the bioinspired probe is 89% lesser with respect to the cylindrical probe and 26% lesser with respect to the conical probe. The penetration performance of the considered tip shapes was evaluated also by means of numerical simulations, obtaining a good agreement with the experimental results. Additional investigations on plant root morphology, movement strategies, and material properties can allow the development of innovative bioinspired solutions exploitable in challenging environments. This research can bring to breakthrough scenarios in different fields, such as exploration tasks, environmental monitoring, geotechnical studies, and medical applications
description: 10.1371/journal.pone.0197411
DOI: 10.5281/zenodo.1211631
title: Characterization And Simulation Data Of Cylindrical, Elliptical, Parabolic, Conical And Root-Like Tips With Diameters In Sandy Loam Soil

description: Plants use many strategies to move efficiently in soil, such as growth from the tip, tropic movements, and morphological changes. In this paper, we propose a method to translate morphological features of <em>Zea mays</em> roots into a new design of soft robots that will be able to move in soil. The method relies on image processing and curve fitting techniques to extract the profile of <em>Z</em>. <em>mays</em> primary root. We implemented an analytic translation of the root profile in a 3D model (CAD) to fabricate root-like probes by means of 3D printing technology. Then, we carried out a comparative analysis among the artificial root-like probe and probes with different tip shapes (cylindrical, conical, elliptical, and parabolic) and diameters (11, 9, 7, 5, and 3 mm). The results showed that the energy consumption and the penetration force of the bioinspired probe are better with respect to the other shapes for all the diameters of the developed probes. For 100 mm of penetration depth and 7 mm of probe diameter, the energy consumption of the bioinspired probe is 89% lesser with respect to the cylindrical probe and 26% lesser with respect to the conical probe. The penetration performance of the considered tip shapes was evaluated also by means of numerical simulations, obtaining a good agreement with the experimental results. Additional investigations on plant root morphology, movement strategies, and material properties can allow the development of innovative bioinspired solutions exploitable in challenging environments. This research can bring to breakthrough scenarios in different fields, such as exploration tasks, environmental monitoring, geotechnical studies, and medical applications
description: 10.1371/journal.pone.0197411
DOI: 10.5281/zenodo.1211632
title: This Is Another Test Title

description: This is the description of the folder1
DOI: 10.5281/zenodo.1211633
title: This Is Another Test Title

description: This is the description of the folder1
DOI: 10.5517/ccdc.csd.cc1z1hm4
title: CCDC 1818696: Experimental Crystal Structure Determination

description: Related Article: Scott A. Pattenaude, Ezra J. Coughlin, Tyler S. Collins, Matthias Zeller, Suzanne C. Bart|2018|Inorg.Chem.|57|4543|doi:10.1021/acs.inorgchem.8b00298
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zfh30
title: CCDC 1830212: Experimental Crystal Structure Determination

description: Related Article: Scott A. Pattenaude, Ezra J. Coughlin, Tyler S. Collins, Matthias Zeller, Suzanne C. Bart|2018|Inorg.Chem.|57|4543|doi:10.1021/acs.inorgchem.8b00298
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.1211638
title: Amazon Mobile Reviews

description: https://www.kaggle.com/PromptCloudHQ/amazon-reviews-unlocked-mobile-phones
description: {"references": ["https://www.kaggle.com/PromptCloudHQ/amazon-reviews-unlocked-mobile-phones"]}
DOI: 10.5281/zenodo.1211639
title: Amazon Mobile Reviews

description: https://www.kaggle.com/PromptCloudHQ/amazon-reviews-unlocked-mobile-phones
description: {"references": ["https://www.kaggle.com/PromptCloudHQ/amazon-reviews-unlocked-mobile-phones"]}
DOI: 10.15468/ojt4ez
title: Species delimitation in the Gehyra nana (Squamata: Gekkonidae) complex: cryptic and divergent morphological evolution in the Australian Monsoonal Tropics, with the description of four new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Doughty, Paul, Bourke, Gayleen, Tedeschi, Leonardo G., Pratt, Renae C., Oliver, Paul M., Palmer, Russell A., Moritz, Craig (2018): Species delimitation in the Gehyra nana (Squamata: Gekkonidae) complex: cryptic and divergent morphological evolution in the Australian Monsoonal Tropics, with the description of four new species. Zootaxa 4403 (2): 201-244, DOI: https://doi.org/10.11646/zootaxa.4403.2.1
DOI: 10.17632/8xytkrgbyh.1
title: Data for: The impact of airline mergers on quality: Why do different mergers have such different effects?
DOI: 10.15468/w5uzug
title: A fossil caddisfly (Insecta: Trichoptera) from the Eocene of Colorado

description: This dataset contains the digitized treatments in Plazi based on the original journal article Robinson, Jason L., Thomas, M. Jared, Heads, Sam W. (2018): A fossil caddisfly (Insecta: Trichoptera) from the Eocene of Colorado. Zootaxa 4403 (2): 389-394, DOI: https://doi.org/10.11646/zootaxa.4403.2.10
DOI: 10.17632/4pzh3gjkm9.1
title: The H3K36me2 methyltransferase Nsd1 Demarcates PRC2-mediated H3K27me2 and H3K27me3 Domains in Embryonic Stem Cells.

description: Western blot and IF Stainings
DOI: 10.13135/ela-188
title: Dedication of a gymnasiarch
DOI: 10.15468/bp39bu
title: A new soldier beetle Malthinellus exiguus sp. nov. (Coleoptera: Cantharidae) from the Ryukyus in southwestern Japan, with a key to Japanese species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Takahashi, Naoki (2018): A new soldier beetle Malthinellus exiguus sp. nov. (Coleoptera: Cantharidae) from the Ryukyus in southwestern Japan, with a key to Japanese species. Zootaxa 4403 (2): 395-400, DOI: https://doi.org/10.11646/zootaxa.4403.2.11
DOI: 10.17632/5wwwtv7c8c.1
title: Cross-identification between Cordoba Durchmusterung catalog (declinations -22, -23 and -24) and PPMX catalog

description: This dataset contains source files for generating the cross-identification between Cordoba Durchmusterung catalog (declinations -22, -23 and -24) and PPMX catalog. The resulting catalog lies in the file cat/new_cd.txt and its format in the file cat/new_format.txt
DOI: 10.17632/7phb3j4k9p.1
title: Mutual stabilization between TRIM9 short isoform and MKK6 potentiates p38 signaling to synergistically suppress glioblastoma progression

description: Mutual stabilization between TRIM9 short isoform and MKK6 potentiates p38 signaling to synergistically suppress glioblastoma progression
DOI: 10.17632/pdmccttvwb.1
title: The NLRP3 inflammasome suppresses protective immunity to gastrointestinal helminth infection. Alhallaf et al

description: Raw flow cytometry data for specified Figure plots. Please refer to original figures and orientation (top/bottom/left/right).
DOI: 10.17632/v4sp99g5dg.1
title: Data from "Fishing in troubled waters: Revealing genomic signatures of local adaptation in response to freshwater pollutants in two macroinvertebrates"

description: Geneset: Genes in the Glossosoma conformis draft genome were predicted using ab initio and homology-based approaches. Augustus was used for ab initio predictions. For the homology-based approach, protein datasets from related species (Apis mellifera, Nasonia vitripennis, Drosophila melanogaster, Anopheles gambiae, Plutella xylostella, Bombyx mori, Tribolium castaneum, Pediculus humanus, Acyrthosiphon pisum, Daphnia pulex, Caenorhabditis elegans and Homo sapiens) were aligned to the draft genome assemblies using BLASTp (cutoff: 10-5), and gene models were generated by GeneWise. A consensus gene set that merged ab initio and homology-based predictions was created using GLEAN. The three resulting data files contain a table with summary information per predicted gene (Glossosoma_conformis.gff), the predicted mRNA sequences (Glossosoma_conformis.cds) and the predicted protein sequences (Glossosoma_conformis.pep). Functional annotation: Gene functions were assigned to the Geneset of the Glossosoma conformis draft genome using BLASTp (cutoff: 10-5) against KEGG (release 58), non-redundant protein sequences (NCBI release 20150222), Swiss-Prot, and TrEMBL (Uniprot release 201203). Conserved protein domains were assessed by InterPro and InterProScan. Separate files are provided for each database. nuclear RNA: Nuclear RNA sequences in the Glossosoma conformis draft genome were identified in the draft genome assembly. tRNA genes were identified using tRNAscan-SE with default parameters. miRNA and snRNA were identified using the INFERNAL software by searching against the Rfam database (release 9.1) with default parameters. rRNA genes were identified by BLASTn (cutoff: 10-5) searches against conserved invertebrate rRNA sequences. Separate files are provided for each type of RNA Glossosoma conformis.pop: Final dataset of Dugesia gonocephala after all filtering steps used for population genetics and selection tests. Dugesia gonocephala.pop: Final dataset of Dugesia gonocephala after all filtering steps used for population genetics and selection tests.
DOI: 10.17632/wk8sfwbfw4.1
title: A Cell-Autonomous Mammalian 12-hour Clock Coordinates Metabolic and Stress Rhythms

description: Raw and processed images for single cell Eif2ak3-dGFP experiment in MEFs
DOI: 10.17632/z9zbzwtw3r.1
title: Data for: Factors associated with Influenza vaccination failure and severe disease in a French region in 2015

description: Current influenza vaccination strategy is based on limited analyses of circulating strains and has some drawbacks, as illustrated during the 2014-2015 season with the circulation of A(H3N2) viruses belonging to divergent genetic subgroups. We reasoned that these strains, poorly neutralized in vitro, may have been associated with vaccination failure and more severe diseases. We conducted a study on a continuous series of 249 confirmed influenza infections. Incidence was three fold greater than in the previous three years. Most isolates were A(H3N2) viruses (78%) and clustered in subgroups 3C.2a (57%) and 3C.3b (43%). We identified 23 non-synonymous mutations that had already been identified during previous seasons at low frequencies, except mutation Q197H, present in 26% of 3C.3b isolates. We identified lung disorder, tobacco smoking and A(H1N1)pdm09 infection as risk factor of severe influenza disease. In contrast, young age (&lt; 5 years), A(H3N2) infection and initial admission to an emergency department were associated with a better outcome of influenza infection.
DOI: 10.17632/3bybgz2jhz.1
title: An artificial molecular machine that builds an asymmetric catalyst

description: Data file for SEC trace of track 3 and machine 1.
DOI: 10.17632/kmk7ngcbwb.1
title: Infragravity wave heights and ambient motions at Cape Canaveral shoals

description: Study collaboration and funding were provided by the U.S. Department of the Interior, Bureau of Ocean Energy Management, Environmental Studies Program, Washington, DC under Agreement Number M13AC00012. These data relate to the coherence between infragravity wave heights and ambient motions at several locations over the shoals offshore of a cuspate foreland. Observations of water velocity and near-bottom pressure were obtained from upward pointing acoustic Doppler current profilers (ADCPs) at inner and outer swales, and ridges of Shoal E and Shoal D, offshore of Cape Canaveral, in the Florida Atlantic coast. Measurements were conducted during Fall 2013, Spring and Fall 2014, and Spring and Fall 2015. Mean water depth during all deployments was ~14 m. Pressure and velocity data were recorded in bursts of 1200, 2048, 2400, or 3600 data at 2 Hz. Pressure was measured ca. 1 m above the bed, whereas velocity profiles were obtained throughout the water column when possible. This collection also includes wave statistics (significant wave height, peak period, and peak direction), measured and predicted bound infragravity wave heights, and wavelet coherence spectra between water motions (water levels and velocities).
DOI: 10.17632/shzpgd4ytw.3
title: Lyra_dataset

description: We provided the BLUP mean of the traits from the 906 (File USP set) and 452 hybrids (File HELIX set), the additive and dominance GBLUP matrix (File USP_GB; HELIX_GB), CNV matrix (File USP_CNV; HELIX_CNV), and the total number of CNV (copy gain, copy loss, and gain/loss ratio) (File NumberCNV).
DOI: 10.17632/ywvrn3kjz4.1
title: Avian Diversity of Vettangudi Birds Sanctuary, Southern India

description: Diversity of Birds and their utility of the floristic composition in the ephemeral ponds of Vettangudi Birds Sanctuary pond was studied for one year and the data were collected repeatdly in equal monthly intervals. The floristic composition of both aquatic, emergent and dry benthic zone vegetation of the pond greatly supports the migratory avian population for their sheltering, nest building and breeding. Best Correlations were found with the birds diversity with the avian species and poor correlation co-efficient was found with the individuals occurred during the study. The list of birds population is categorized using IUCN status and different category of migratroy nature.
DOI: 10.15468/9x1la2
title: Dalmatosomatidae, a new monotypic family, and Dalmatosoma agaricum gen. et sp. nov. (Diplopoda: Chordeumatida: Craspedosomatidea) from Croatia, Balkan Peninsula

description: This dataset contains the digitized treatments in Plazi based on the original journal article Antić, Dragan Ž., Rađa, Tonći, Makarov, Slobodan E. (2018): Dalmatosomatidae, a new monotypic family, and Dalmatosoma agaricum gen. et sp. nov. (Diplopoda: Chordeumatida: Craspedosomatidea) from Croatia, Balkan Peninsula. Zootaxa 4403 (2): 289-306, DOI: https://doi.org/10.11646/zootaxa.4403.2.4
DOI: 10.15468/jkf5s9
title: Brazilian Pseudochironomini (Diptera: Chironomidae) Part 2. New Pseudochironomus and Riethia species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Trivinho-Strixino, Susana, Shimabukuro, Erika Mayumi (2018): Brazilian Pseudochironomini (Diptera: Chironomidae) Part 2. New Pseudochironomus and Riethia species. Zootaxa 4403 (2): 245-260, DOI: https://doi.org/10.11646/zootaxa.4403.2.2
DOI: 10.15468/lemnfs
title: Taxonomic status of two populations of Bent-toed Geckos of the Cyrtodactylus irregularis complex (Squamata: Gekkonidae) with description of a new species from Nui Chua National Park, southern Vietnam

description: This dataset contains the digitized treatments in Plazi based on the original journal article Pauwels, Olivier S. G., Nazarov, Roman A., Bobrov, Vladimir V., Poyarkov, Nikolay A. (2018): Taxonomic status of two populations of Bent-toed Geckos of the Cyrtodactylus irregularis complex (Squamata: Gekkonidae) with description of a new species from Nui Chua National Park, southern Vietnam. Zootaxa 4403 (2): 307-335, DOI: https://doi.org/10.11646/zootaxa.4403.2.5
DOI: 10.5281/zenodo.1161178
title: Cancerepisys – Integrative Analysis Of Epigenetic Networks That Determine The Chronic Lymphocytic Leukemia Disease State

description: A public repository of data processed for Mallm, Iskar, Ishaque et. al. 2018 Linking aberrant chromatin features in chronic lymphocytic leukemia to deregulated transcription factor networks

<strong>Website:</strong> http://www.cancerepisys.org/cancerepisys/index.html

<strong>Github:</strong> https://github.com/CancerEpiSys/Mallm-et-al-processing-scripts

<strong>Research mission</strong>

<em>CancerEpiSys</em> is a BMBF funded research project with the CancerSys program that dissects the epigenetic networks associated with chronic lymphocytic leukemia (CLL) to develop novel diagnostic and therapeutic approaches for the disease. It has been initiated based on the emerging view that signals encoded in the DNA sequence, epigenetic modifications (e.g. DNA methylation, post-translational histone modifications), non-coding RNAs and nucleosome positioning are not independently regulated properties. Rather, these chromatin features are governed by an interconnected network of molecular processes that determine the cellular gene expression program. Any errors that occur in the interplay of these factors can lead to aberrant gene regulation associated with cancer. To rationalize the mode of action of novel ‘epigenetic’ drugs in cancer therapy that change properties of this network, we will dissect experimentally and mathematically the interdependence of these processes, focusing on CLL.

The main objectives of <em>CancerEpiSys</em> are: (i) deciphering the relation of DNA sequence, epigenetic modifications, nucleosome positioning and aberrant gene expression in CLL, (ii) the identification of epigenetic network morphologies that describe the response to the epigenetic drugs panobinostat and 3-deazaneplanocin (DZNep) that inhibit histone deacetylases and methyltransferases, (iii) the characterization of epigenetic markers and chromatin features of CLL patient subgroups, and (iv) the integration of results into an analysis scheme for the epigenetic aberrations most relevant for prognostication, prediction of treatment relapse and stratification of patients with respect to therapeutic options. Moreover, our results will inform novel therapeutic approaches that target gene-expression programs at the epigenetic level to sensitize cancer cells towards apoptosis and anti-growth signals.
DOI: 10.15468/tarfj3
title: Phylogenetic and morphological resolution of the Helobdella stagnalis species-complex (Annelida: Clitellata: Hirudinea)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Saglam, Naim, Kutschera, Ulrich, Saunders, Ralph, Saidel, William M., Balombini, Katherine L. W., Shain, Daniel H. (2018): Phylogenetic and morphological resolution of the Helobdella stagnalis species-complex (Annelida: Clitellata: Hirudinea). Zootaxa 4403 (1): 61-86, DOI: https://doi.org/10.11646/zootaxa.4403.1.3
DOI: 10.5281/zenodo.1161179
title: Cancerepisys – Integrative Analysis Of Epigenetic Networks That Determine The Chronic Lymphocytic Leukemia Disease State

description: A public repository of data processed for Mallm, Iskar, Ishaque et. al. 2018 Linking aberrant chromatin features in chronic lymphocytic leukemia to deregulated transcription factor networks

<strong>Website:</strong> http://www.cancerepisys.org/cancerepisys/index.html

<strong>Github:</strong> https://github.com/CancerEpiSys/Mallm-et-al-processing-scripts

<strong>Research mission</strong>

<em>CancerEpiSys</em> is a BMBF funded research project with the CancerSys program that dissects the epigenetic networks associated with chronic lymphocytic leukemia (CLL) to develop novel diagnostic and therapeutic approaches for the disease. It has been initiated based on the emerging view that signals encoded in the DNA sequence, epigenetic modifications (e.g. DNA methylation, post-translational histone modifications), non-coding RNAs and nucleosome positioning are not independently regulated properties. Rather, these chromatin features are governed by an interconnected network of molecular processes that determine the cellular gene expression program. Any errors that occur in the interplay of these factors can lead to aberrant gene regulation associated with cancer. To rationalize the mode of action of novel ‘epigenetic’ drugs in cancer therapy that change properties of this network, we will dissect experimentally and mathematically the interdependence of these processes, focusing on CLL.

The main objectives of <em>CancerEpiSys</em> are: (i) deciphering the relation of DNA sequence, epigenetic modifications, nucleosome positioning and aberrant gene expression in CLL, (ii) the identification of epigenetic network morphologies that describe the response to the epigenetic drugs panobinostat and 3-deazaneplanocin (DZNep) that inhibit histone deacetylases and methyltransferases, (iii) the characterization of epigenetic markers and chromatin features of CLL patient subgroups, and (iv) the integration of results into an analysis scheme for the epigenetic aberrations most relevant for prognostication, prediction of treatment relapse and stratification of patients with respect to therapeutic options. Moreover, our results will inform novel therapeutic approaches that target gene-expression programs at the epigenetic level to sensitize cancer cells towards apoptosis and anti-growth signals.
DOI: 10.5281/zenodo.1211662
title: Some Garbo

description: This is a test
DOI: 10.5281/zenodo.1211663
title: Some Garbo

description: This is a test
DOI: 10.5281/zenodo.1212234
title: Dobler Et Al. 2018 Hru Data

description: Data and R-Script used for 'Dobler et al. 2018 HRU'.
DOI: 10.5281/zenodo.1211820
title: Binary Black-Hole Simulation Sxs:Bbh:0002

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.14455/nrct.fas.2016.225
title: โครงการปรับปรุงพื้นที่นาร้าง เพื่อปลูกปาล์มน้ำมัน
DOI: 10.14455/nrct.fas.2016.226
title: โครงการการพัฒนาระบบองค์ความรู้ด้านฐานทรัพยากรอาหารของชุมชน ในภาวะเปราะบางเพื่อเสริมสร้างความมั่นคงทางอาหาร
DOI: 10.14455/nrct.fas.2016.227
title: ก้าวล้ำเทคโนโลยีอุตสาหกรรมอิเล็กทรอนิกส์ไทย
DOI: 10.14455/nrct.fas.2016.229
title: การพัฒนาอุตสาหกรรมเชิงนิเวศ
DOI: 10.14455/nrct.fas.2016.230
title: การพัฒนาอุตสาหกรรมเชิงนิเวศ กระทรวงอุตสาหกรรม
DOI: 10.5281/zenodo.1211532
title: Single-cell -omics datasets containing a trajectory

description: Contains datasets to compare trajectory inference methods. See https://benchmark.dynverse.org

These files can be opened in R using `readRDS` .

Each file is a list containing at least:


	expression and counts: filtered log<sub>2</sub> normalised expression files and raw counts
	milestone_network, milestone_percentages and divergence_regions: the trajectory model
DOI: 10.5281/zenodo.1211533
title: Gold Standard Single-Cell -Omics Datasets For Comparing Trajectory Inference Methods

description: Contains datasets to compare trajectory inference methods. See https://www.biorxiv.org/content/early/2018/03/05/276907