cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.2068098
title: LTER Lampyrid data

description: Observations of lampyrids (fireflies) captured at Kellogg Biological Station's Main Cropping system experiment 2004-2015.<br><br>Data archived in this file are extracted from the database held here:http://lter.kbs.msu.edu/datatables/67 and combined with agronomic records from the site at http://lter.kbs.msu.edu/datatables/162<br>Fields are defined as follows:<br><br>DATE- date of sample collection, M/D/Y format<br>TREAT_DESC - Treatment description- the permanent treatment of the plot where the sample was taken. Treatments are Coniferous, Deciduous, Successional, Alfalfa, Poplar trees, Early Successional Community, Conventional till, No till, Biologically based (organic) and Reduced input<br>HABITAT- plant community- largely the same as TREAT_DESC, where Coniferous=CF, Deciduous=DF, Successional=SF, Alfalfa=alfalfa, Poplar trees=poplar, Early Successional Community=ES, but Conventional till, No till, Biologically based (organic) and Reduced input can be wheat, soybeans or maize- this variable allows us to account for crop identity in the four treatments undergoing crop rotation.<br>REPLICATE - the replicate where the sample was taken (values 1-6)<br>STATION - the sampling station within the replicate where the sample was taken. each replicate had 5 sampling stations<br><br>ADULTS - the number of adult fireflies on the trap, for that station-rep-treatment-date combination.<br><br>
DOI: 10.6084/m9.figshare.2068107
title: Figure 2. RARs and RXRs expressions in ARPE-19 cells

description: RARs mRNA was strongly expressed in ARPE-19 cells, whereas RXRs expression was not detected (Figure A and B). RARβ mRNA levels was increased after ATRA treatment when compared with controls. Expression of RARβ mRNA was dose dependent with a maximal effect observed with 10<sup>-5 </sup>mol/l ATRA. In contrast, there were no significant changes in the mRNA levels of RARα and RARγ (P&gt;0.05) (Figure C and D). <b></b>
DOI: 10.6084/m9.figshare.2068125.v2
title: RLA-CL

description: Test data sets for RLA-CL.1. in_3200k.tar.gz file contains 3,200,000 records, from which all other data sets are generated.2. in_1600k.tar.gz and in_1000k.tar.gz contain data sets mixed with errors deliberately.3. Used in_1000k_15p.tar.gz for comparison among TPA(FCED), RLA, and RLA-CL.
DOI: 10.6084/m9.figshare.2068098.v1
title: LTER Lampyrid data

description: Observations of lampyrids (fireflies) captured at Kellogg Biological Station's Main Cropping system experiment 2004-2015.<br><br>Data archived in this file are extracted from the database held here:http://lter.kbs.msu.edu/datatables/67 and combined with agronomic records from the site at http://lter.kbs.msu.edu/datatables/162<br>Fields are defined as follows:<br><br>DATE- date of sample collection, M/D/Y format<br>TREAT_DESC - Treatment description- the permanent treatment of the plot where the sample was taken. Treatments are Coniferous, Deciduous, Successional, Alfalfa, Poplar trees, Early Successional Community, Conventional till, No till, Biologically based (organic) and Reduced input<br>HABITAT- plant community- largely the same as TREAT_DESC, where Coniferous=CF, Deciduous=DF, Successional=SF, Alfalfa=alfalfa, Poplar trees=poplar, Early Successional Community=ES, but Conventional till, No till, Biologically based (organic) and Reduced input can be wheat, soybeans or maize- this variable allows us to account for crop identity in the four treatments undergoing crop rotation.<br>REPLICATE - the replicate where the sample was taken (values 1-6)<br>STATION - the sampling station within the replicate where the sample was taken. each replicate had 5 sampling stations<br><br>ADULTS - the number of adult fireflies on the trap, for that station-rep-treatment-date combination.<br><br>
DOI: 10.6084/m9.figshare.2068107.v2
title: Figure 2. RARs and RXRs expressions in ARPE-19 cells

description: RARs mRNA was strongly expressed in ARPE-19 cells, whereas RXRs expression was not detected (Figure A and B). RARβ mRNA levels was increased after ATRA treatment when compared with controls. Expression of RARβ mRNA was dose dependent with a maximal effect observed with 10<sup>-5 </sup>mol/l ATRA. In contrast, there were no significant changes in the mRNA levels of RARα and RARγ (P&gt;0.05) (Figure C and D). <b></b>
DOI: 10.6084/m9.figshare.2068080
title: DHIVINE_PLOS1

description: The DHIVINE model for Linux platform. It simulates management practices in viticulture. The model comes with the corresponding simulation engine: DIESE. <br><br> Many farming-system studies have investigated the design and evaluation of crop-management practices with respect to economic performance and reduction in environmental impacts. In contrast, little research has been devoted to analysing these practices in terms of matching the recurrent context-dependent demand for resources (labour in particular) with those available on the farm. This paper presents Dhivine, a simulation model of operational management of grape production at the vineyard scale. Particular attention focuses on representing a flexible plan, which organises activities temporally, the resources available to the vineyard manager and the process of scheduling and executing the activities. The model relies on a generic production-system ontology used in several agricultural production domains. The types of investigations that the model supports are briefly illustrated. The enhanced realism of the production-management situations simulated makes it possible to examine and understand properties of resource-constrained work-organisation strategies and possibilities for improving them. <br><br>Make extraction from archive (tar -xzvf archive.tar.gz) in DHIVINE_PLOS1 created in your home. See then READ_ME_gen <br>
DOI: 10.6084/m9.figshare.2068080.v1
title: DHIVINE_PLOS1

description: The DHIVINE model for Linux platform. It simulates management practices in viticulture. The model comes with the corresponding simulation engine: DIESE. <br><br> Many farming-system studies have investigated the design and evaluation of crop-management practices with respect to economic performance and reduction in environmental impacts. In contrast, little research has been devoted to analysing these practices in terms of matching the recurrent context-dependent demand for resources (labour in particular) with those available on the farm. This paper presents Dhivine, a simulation model of operational management of grape production at the vineyard scale. Particular attention focuses on representing a flexible plan, which organises activities temporally, the resources available to the vineyard manager and the process of scheduling and executing the activities. The model relies on a generic production-system ontology used in several agricultural production domains. The types of investigations that the model supports are briefly illustrated. The enhanced realism of the production-management situations simulated makes it possible to examine and understand properties of resource-constrained work-organisation strategies and possibilities for improving them. <br><br>Make extraction from archive (tar -xzvf archive.tar.gz) in DHIVINE_PLOS1 created in your home. See then READ_ME_gen <br>
DOI: 10.6084/m9.figshare.2068044
title: Serotonin and dopamine D2 PET images

description: Template images by averaging healthy controls protein expression density maps (Data are from the following studies: "Rizzo G, Veronese M, Heckemann RA, Selvaraj S, Howes OD, Hammers A, et al. The predictive power of brain mRNA mappings for in vivo protein density: a positron emission tomography correlation study. Journal of cerebral blood flow and metabolism 2014;34(5):827-35. doi: 10.1038/jcbfm.2014.21" and "Grecchi E, Doyle OM, Bertoldo A, Pavese N, Turkheimer FE. Brain shaving: adaptive detection for brain PET data. Physics in Medicine and Biology. 2014;59(10):2517. doi: 10.1088/0031-9155/59/10/2517".
DOI: 10.6084/m9.figshare.2068044.v1
title: Serotonin and dopamine D2 PET images

description: Template images by averaging healthy controls protein expression density maps (Data are from the following studies: "Rizzo G, Veronese M, Heckemann RA, Selvaraj S, Howes OD, Hammers A, et al. The predictive power of brain mRNA mappings for in vivo protein density: a positron emission tomography correlation study. Journal of cerebral blood flow and metabolism 2014;34(5):827-35. doi: 10.1038/jcbfm.2014.21" and "Grecchi E, Doyle OM, Bertoldo A, Pavese N, Turkheimer FE. Brain shaving: adaptive detection for brain PET data. Physics in Medicine and Biology. 2014;59(10):2517. doi: 10.1088/0031-9155/59/10/2517".
DOI: 10.6084/m9.figshare.2068011
title: Dopamine PET and SPET images

description: [<sup>18</sup>F]FDOPA PET and [<sup>123</sup>I]FP-CIT SPET templates freely available at the NITRC website (http://www.nitrc.org/projects/spmtemplates/)
DOI: 10.6084/m9.figshare.2068074.v1
title: RARs and RXRs expressions in ARPE-19 cells.tif

description: RARs mRNA was strongly expressed in ARPE-19 cells, whereas RXRs expression was not detected (Figure A and B). RARβ mRNA levels was increased after ATRA treatment when compared with controls. Expression of RARβ mRNA was dose dependent with a maximal effect observed with 10<sup>-5 </sup>mol/l ATRA. In contrast, there were no significant changes in the mRNA levels of RARα and RARγ (P&gt;0.05) (Figure C and D). <b></b>
DOI: 10.6084/m9.figshare.2068065.v1
title: The Effect of ATRA on survival in ARPE-19 cells-.tif

description: ATRA caused a low level of apoptosis (&lt;10%) at concentrations from 10<sup>-9</sup> to 10<sup>-6 </sup>mol/l, but the cell morphology remained normal. The cells were inhibited at the highest concentration of ATRA treatment 10<sup>-5 </sup>mol/l (Figure 1A). At both 24 h and 48 h, the cell proliferation was inhibited by ATRA in a dose-dependent manner. A small reduction (&lt;10%) in the number of cells also occurred with a lower ATRA concentration of 10<sup>−6</sup> mol/l, but these changes were not statistically significant (P&gt;0.05). When the ATRA concentration was 10<sup>-5 </sup>mol/l, the cell survival rate was below 50% at both time points (Figure 1B).
DOI: 10.6084/m9.figshare.2067951
title: Arousal and false memories.xlsx

description: This dataset refers to the experiment reported in the paper entitled "Arousal - but not valence - reduces false memories at retrieval". Recognition responses are shown in column "Response" (1 refers to "yes", 0 refers to "no"). Participants were divided into three mood-induction groups (negative, positive and neutral; see column "Group"). The effectiveness of mood-induction was tested on both dimensions of valence and arousal with the Self Assessment Manikin rating scale (i.e., SAM_PRE_VAL, SAM_PRE_ARO...)."Type" refers to the recognition item (whether it was target, or distractor at encoding; distractor could be either causal, gap-filling or inconsistent).<br>
DOI: 10.6084/m9.figshare.2067966
title: Origin of high-An plagioclase in the early Permian (~280 Ma) Xiaohaizi wehrlite, Northwest China: insights from melt inclusions in clinopyroxene macrocrysts and zircon oxygen isotopes

description: The Xiaohaizi wehrlite intrusion in the early Permian Tarim Large Igneous Province, Northwest China, is characterized by unusual high-An (up to 86) plagioclases. It has been suggested that H<sub>2</sub>O may have exerted a major control on their formation, but this interpretation requires further direct evidence. Moreover, it remains unclear where the water came from. In order to unravel these questions, we present electron microprobe analyses of minerals and melt inclusions in clinopyroxene macrocrysts in the dikes crosscutting the Xiaohaizi wehrlite intrusion and in situ oxygen isotope data of zircons from the Xiaohaizi wehrlite. The homogenized melt inclusions have restricted SiO<sub>2</sub> (45.5–48.7 wt.%) and Na<sub>2</sub>O + K<sub>2</sub>O (2.4–3.8 wt.%) contents, displaying sub-alkaline affinity. This is inconsistent with the alkaline characteristic of the parental magma of the clinopyroxenes, suggesting significant modification of melt inclusions by contamination of the host clinopyroxene due to overheating. Nevertheless, the Ca/Na ratios (2.9–4.7) of melt inclusions are the upper limit of the parental magma of the clinopyroxenes due to high CaO (21.5–23.0 wt.%) and very low Na<sub>2</sub>O (0.22–0.34 wt.%) contents in the host clinopyroxenes. Thermodynamic calculation suggests that under fixed P (2.7 kbar) and T (1000°C), and assumed H<sub>2</sub>O (~1.5 wt.%) conditions, the Ca/Na ratio of the parental magma cannot generate high-An plagioclase in the wehrlite. The results confirm that H<sub>2</sub>O exerts a major control. Zircon δ<sup>18</sup>O (VSMOW) values (2.99–3.71‰) are significantly lower than that of mantle-derived zircon (5.3 ± 0.6‰). Such low zircon δ<sup>18</sup>O values may be due to incorporation of large amounts of low-δ<sup>18</sup>O, hydrothermally altered oceanic crust. However, geochemical and Sr-Nd-Pb isotopic data do not support recycled oceanic crust in the mantle source of the Xiaohaizi intrusion. Alternatively this can be explained by incorporation of meteoritic water in the magma chamber. This will increase the H<sub>2</sub>O content of the liquid that finally crystallize high-An plagioclases.
DOI: 10.6084/m9.figshare.2067966.v1
title: Origin of high-An plagioclase in the early Permian (~280 Ma) Xiaohaizi wehrlite, Northwest China: insights from melt inclusions in clinopyroxene macrocrysts and zircon oxygen isotopes

description: The Xiaohaizi wehrlite intrusion in the early Permian Tarim Large Igneous Province, Northwest China, is characterized by unusual high-An (up to 86) plagioclases. It has been suggested that H<sub>2</sub>O may have exerted a major control on their formation, but this interpretation requires further direct evidence. Moreover, it remains unclear where the water came from. In order to unravel these questions, we present electron microprobe analyses of minerals and melt inclusions in clinopyroxene macrocrysts in the dikes crosscutting the Xiaohaizi wehrlite intrusion and in situ oxygen isotope data of zircons from the Xiaohaizi wehrlite. The homogenized melt inclusions have restricted SiO<sub>2</sub> (45.5–48.7 wt.%) and Na<sub>2</sub>O + K<sub>2</sub>O (2.4–3.8 wt.%) contents, displaying sub-alkaline affinity. This is inconsistent with the alkaline characteristic of the parental magma of the clinopyroxenes, suggesting significant modification of melt inclusions by contamination of the host clinopyroxene due to overheating. Nevertheless, the Ca/Na ratios (2.9–4.7) of melt inclusions are the upper limit of the parental magma of the clinopyroxenes due to high CaO (21.5–23.0 wt.%) and very low Na<sub>2</sub>O (0.22–0.34 wt.%) contents in the host clinopyroxenes. Thermodynamic calculation suggests that under fixed P (2.7 kbar) and T (1000°C), and assumed H<sub>2</sub>O (~1.5 wt.%) conditions, the Ca/Na ratio of the parental magma cannot generate high-An plagioclase in the wehrlite. The results confirm that H<sub>2</sub>O exerts a major control. Zircon δ<sup>18</sup>O (VSMOW) values (2.99–3.71‰) are significantly lower than that of mantle-derived zircon (5.3 ± 0.6‰). Such low zircon δ<sup>18</sup>O values may be due to incorporation of large amounts of low-δ<sup>18</sup>O, hydrothermally altered oceanic crust. However, geochemical and Sr-Nd-Pb isotopic data do not support recycled oceanic crust in the mantle source of the Xiaohaizi intrusion. Alternatively this can be explained by incorporation of meteoritic water in the magma chamber. This will increase the H<sub>2</sub>O content of the liquid that finally crystallize high-An plagioclases.
DOI: 10.6084/m9.figshare.2067921
title: Serial correlations in continuous flash suppression

description: This fileset contains the data reported in: <br>Moors, P., Stein, T., Wagemans, J., van Ee, R. (2015). Serial correlations in Continuous Flash Suppression. <i>Neuroscience of Consciousness</i>, art.nr. niv010.<br>The explanations_dataset file contains all information regarding the datasets and what the variables refer to.
DOI: 10.6084/m9.figshare.2067909
title: Northumbria University RCUK OA year 2

description: Northumbria University's report on usage of the RCUK Open Access block grant, and compliance with the RCUK Open Access policy, for the year 1st August 2014-31st July 2015.<br>Publication data was gathered from Northumbria Research Link, the University's Open Access research repository. Information about article processing charges is recorded through the year in the Jisc APC template. Further information on research funding was obtained through reports extracted from the Agresso finance system.<br><br>
DOI: 10.6084/m9.figshare.2067921.v1
title: Serial correlations in continuous flash suppression

description: This fileset contains the data reported in: <br>Moors, P., Stein, T., Wagemans, J., van Ee, R. (2015). Serial correlations in Continuous Flash Suppression. <i>Neuroscience of Consciousness</i>, art.nr. niv010.<br>The explanations_dataset file contains all information regarding the datasets and what the variables refer to.
DOI: 10.6084/m9.figshare.2067909.v2
title: Northumbria University RCUK OA year 2

description: Northumbria University's report on usage of the RCUK Open Access block grant, and compliance with the RCUK Open Access policy, for the year 1st August 2014-31st July 2015.<br>Publication data was gathered from Northumbria Research Link, the University's Open Access research repository. Information about article processing charges is recorded through the year in the Jisc APC template. Further information on research funding was obtained through reports extracted from the Agresso finance system.<br><br>
DOI: 10.6084/m9.figshare.2067909.v1
title: Northumbria University RCUK OA year 2.xlsx

description: Northumbria University's report on usage of the RCUK Open Access block grant, and compliance with the RCUK Open Access policy, for the year 1st August 2014-31st July 2015.<br>Publication data was gathered from Northumbria Research Link, the University's Open Access research repository. Information about article processing charges is recorded through the year in the Jisc APC template. Further information on research funding was obtained through reports extracted from the Agresso finance system.<br><br>
DOI: 10.6084/m9.figshare.2067843
title: gliding motility assay using bovine caseins as a surface passivator

description: Data are from a gliding motility assay using kinesin-1 and rhodamine labeled microtubules. Videos were taken to investigate the effects of surface passivation on the gliding motility assay. Videos are sped up by a factor of 6 and have been false colored.<br><br>File names follow the convention: <b>passivatorType_Y-M-D_roi</b>.avi. Note that passivatorType can be any of the following: [Alpha_casein, Beta_casein, Kappa_casein, Mixed_casein, Whole_casein]. Y-M-D is a date indicator, and roi is a zero padded integer value indicating a "Region Of Interest" within the slide.<br><b>If you plan to redo speed measurements.</b>Use the timestamps.json file to get accurate timestamps between frames when converting the avi to individual frames. Each avi should have 600 individual frames.<br><br>Please see the given paper for more information about the data and the experiments.<br>
DOI: 10.6084/m9.figshare.2067789
title: three_years_data_elemental_ratio.csv

description: Elemental otolith fingerprints from Sparus aurata, collected in four Mediterranean Lagoons by Tournois et al (2013). Used by Niklitschek & Darnaude as a case study<br>
DOI: 10.6084/m9.figshare.2067789.v1
title: three_years_data_elemental_ratio.csv

description: Elemental otolith fingerprints from Sparus aurata, collected in four Mediterranean Lagoons by Tournois et al (2013). Used by Niklitschek & Darnaude as a case study<br>
DOI: 10.6084/m9.figshare.2067693
title: Image ratings & features

description: Summary of relatedness ratings and image features <br><br><br>
DOI: 10.6084/m9.figshare.2067702
title: Anisotropic Quality Index

description: Anisotropic Quality Index (AQI) for image quality assessment as described in<br><br>Gabarda, S., & Cristóbal, G. (2007). Blind image quality assessment through anisotropy. <i>JOSA A</i>, <i>24</i>(12), B42-B51.<br><br>Matlab code, version R2008b<br>
DOI: 10.6084/m9.figshare.2067843.v1
title: gliding motility assay using bovine caseins as a surface passivator

description: Data are from a gliding motility assay using kinesin-1 and rhodamine labeled microtubules. Videos were taken to investigate the effects of surface passivation on the gliding motility assay. Videos are sped up by a factor of 6 and have been false colored.<br><br>File names follow the convention: passivatorType_Y-M-D_roi.avi. Note that passivatorType can be any of the following: [Alpha_casein, Beta_casein, Kappa_casein, Mixed_casein, Whole_casein].<br><br>Please see the given paper for more information about the data and the experiments.<br>
DOI: 10.6084/m9.figshare.2067681
title: Factors Influencing the Use of Long Acting Reversible Contraceptive Method Among Women Attending Family Planning Service in Dessie town, North East Ethiopia

description: <b>Background</b>: In Ethiopia, the total fertility rate and unmet need for family planning are high. In this country, the contraceptive prevalence rate remains low. A routine health service provides majorly short acting contraceptives. Long Acting Reversible Contraceptives (LARC), despite its several advantages over short acting ones, does slimly constitute the contraceptives coverage. Several researches showed the benefits of LARC, yet in some countries including Ethiopia, the reasons for low use of the method is not well understood. This study aimed at assessing factors affecting the use of LARCs among women of reproductive years attending family planning service in health facilities of Dessie town, North East Ethiopia. <b> </b> <b>Methodology:</b> a facility based cross sectional study using quantitative technique was done on 422 women at six family planning service delivery points in Diessie Town, during the month of January, 2014. A face-to-face interview using a structured questionnaire adapted from relevant researches has been used to generate quantitative data. Both univeraiate and bi-variate analysis was done and OR with the respective 95 % CI is used to show the outcome of the analysis.
DOI: 10.6084/m9.figshare.2067693.v2
title: Image ratings & features

description: Summary of relatedness ratings and image features <br><br><br>
DOI: 10.6084/m9.figshare.2067693.v1
title: Image ratings & features

description: Summary of relatedness ratings and image features <br><br><br>
DOI: 10.6084/m9.figshare.2067702.v1
title: Anisotropic Quality Index

description: MATLAB GUI toolbox for computing AQI for arbitrary images and to perform automatic correlation tests on TID2013 and LIVE databases with their subjective MOS and DMOS quality scores <br>
DOI: 10.6084/m9.figshare.2067843.v2
title: gliding motility assay using bovine caseins as a surface passivator

description: Data are from a gliding motility assay using kinesin-1 and rhodamine labeled microtubules. Videos were taken to investigate the effects of surface passivation on the gliding motility assay. Videos are sped up by a factor of 6 and have been false colored.<br><br>File names follow the convention: passivatorType_Y-M-D_roi.avi. Note that passivatorType can be any of the following: [Alpha_casein, Beta_casein, Kappa_casein, Mixed_casein, Whole_casein].<br><br>Please see the given paper for more information about the data and the experiments.<br>