cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7225002
title: Ambient noise tomography of Gran Canaria island (Canary Islands) for geothermal exploration

description: This file contains the 3-D S-wave velocity model of Gran Canaria island. <strong>Abstract</strong> Ambient noise tomography (ANT) has proved to be efficient in resolving crustal structures for different purposes. Despite the numerous studies carried out in Gran Canaria in the past for purposes of geothermal exploration, ANT had never been used before on this island. We applied this technique to understand Gran Canaria island's shallow structure, determining the 3-D S-wave velocity model of the island and focusing on its implications for geothermal exploration. We used data from 30 seismic stations installed between October 2019 and February 2020. Our findings revealed five relevant velocity anomalies helpful in understanding the island's geology and its geothermal potential. In particular, we identified two high-velocity anomalies in the central part of the island aligned with the primary northwest-southeast structural trends of Gran Canaria. We interpret them as evidence of intrusive volcanic bodies emplaced during the early stages of the island's geological history. We also identified three low-velocity zones located in different parts of the island. We maintain that these anomalies could be associated with porous and highly fractured materials produced during the more recent volcanic episodes. In addition, we observed a spatial correlation of anomalies in the electric conductivity identified in previous studies and strong lateral gradients in our S-wave velocity model. We interpret them as evidence of hydrothermal circulation and thermal anomalies in correspondence of lateral contacts between different geological units and/or faults.
DOI: 10.5281/zenodo.7225034
title: Plasma Short-Chain Fatty Acid Changes After Bariatric Surgery in Subjects with Severe Obesity

description: Effect of bariatric surgery on SCFA profile of subjects with severe obesity. Concentrations of SCFA before and after the BS. Values are expressed as µmol per liter.
DOI: 10.5281/zenodo.7225033
title: Plasma Short-Chain Fatty Acid Changes After Bariatric Surgery in Subjects with Severe Obesity

description: Effect of bariatric surgery on SCFA profile of subjects with severe obesity. Concentrations of SCFA before and after the BS. Values are expressed as µmol per liter.
DOI: 10.6084/m9.figshare.21360480
title: Metastases.xlsx

description: Raw data from measurements of morphometric and BAP-1 expression variables in metastatic uveal melanoma.
DOI: 10.5281/zenodo.7224792
title: Data set for Ligand additivity relationships enable efficient exploration of transition metal chemical space

description: Dataset of transition metal complexes curated in pickle files and comma delimited format, scripts for CSD curation, and computed DFT properties for associated manuscript.
DOI: 10.7303/syn40691568
title: Emails and RG data.xlsx
DOI: 10.5281/zenodo.6798962
title: Project files provided as supporting information to the manuscript "Fast, accurate, and system-specific variable-resolution modelling of proteins"

description: Project files provided as supporting information to the manuscript "Fast, accurate, and system-specific variable-resolution modelling of proteins". The dataset contains the following files: - RMSD_adk: files containing the root-mean-square deviation computed on the C-alpha atoms/beads in the atomistic and CANVAS simulations of adk (Figure 6). - RMSF_adk: files containing the root-mean-square fluctuations of the C-alpha atoms/beads in the atomistic and CANVAS simulations of adk (Figure 6). - APBS_adk: PQR file of the system and DX file of the surface potential, for both the atomistic and CANVAS systems (Figure 7). - SASA_antibody: files containing the per-residue solvent accessible surface area of the atomistic region of the ake protein, in the atomistic and CANVAS simulations (Figure 8). - RMSF_antibody: files containing the root-mean-square fluctuations of the C-alpha atoms/beads in the atomistic and CANVAS simulations of antibody (Figure 9). - APBS_antibody: PQR file of the system and DX file of the surface potential, for both the atomistic and CANVAS systems (Figure 10). - SASA_antibody: files containing the per-residue solvent accessible surface area of the hinge region of the antibody for each conformational cluster, in the atomistic and CANVAS simulations (Figure 11). - RMSIP_antibody: RMSIP between the essential subspaces computed from the atomistic and CANVAS simulations (Figure S3). - rgyr_antibody: files containing the radii of gyration of the antibody for each conformational cluster, in the atomistic and CANVAS simulations (Figure S4).
DOI: 10.5281/zenodo.6798961
title: Project files provided as supporting information to the manuscript "Fast, accurate, and system-specific variable-resolution modelling of proteins"

description: Project files provided as supporting information to the manuscript "Fast, accurate, and system-specific variable-resolution modelling of proteins". The dataset contains the following files: - RMSD_adk: files containing the root-mean-square deviation computed on the C-alpha atoms/beads in the atomistic and CANVAS simulations of adk (Figure 6). - RMSF_adk: files containing the root-mean-square fluctuations of the C-alpha atoms/beads in the atomistic and CANVAS simulations of adk (Figure 6). - APBS_adk: PQR file of the system and DX file of the surface potential, for both the atomistic and CANVAS systems (Figure 7). - SASA_antibody: files containing the per-residue solvent accessible surface area of the atomistic region of the ake protein, in the atomistic and CANVAS simulations (Figure 8). - RMSF_antibody: files containing the root-mean-square fluctuations of the C-alpha atoms/beads in the atomistic and CANVAS simulations of antibody (Figure 9). - APBS_antibody: PQR file of the system and DX file of the surface potential, for both the atomistic and CANVAS systems (Figure 10). - SASA_antibody: files containing the per-residue solvent accessible surface area of the hinge region of the antibody for each conformational cluster, in the atomistic and CANVAS simulations (Figure 11). - RMSIP_antibody: RMSIP between the essential subspaces computed from the atomistic and CANVAS simulations (Figure S3). - rgyr_antibody: files containing the radii of gyration of the antibody for each conformational cluster, in the atomistic and CANVAS simulations (Figure S4). - ake_AA.mp4: video of the all-atom simulation of adenylate kinase - ake_canvas.mp4: video of the canvas simulation of adenylate kinase
DOI: 10.5281/zenodo.6806232
title: Project files provided as supporting information to the manuscript "Fast, accurate, and system-specific variable-resolution modelling of proteins"

description: Project files provided as supporting information to the manuscript "Fast, accurate, and system-specific variable-resolution modelling of proteins". The dataset contains the following files: - RMSD_adk: files containing the root-mean-square deviation computed on the C-alpha atoms/beads in the atomistic and CANVAS simulations of adk (Figure 6). - RMSF_adk: files containing the root-mean-square fluctuations of the C-alpha atoms/beads in the atomistic and CANVAS simulations of adk (Figure 6). - APBS_adk: PQR file of the system and DX file of the surface potential, for both the atomistic and CANVAS systems (Figure 7). - SASA_antibody: files containing the per-residue solvent accessible surface area of the atomistic region of the ake protein, in the atomistic and CANVAS simulations (Figure 8). - RMSF_antibody: files containing the root-mean-square fluctuations of the C-alpha atoms/beads in the atomistic and CANVAS simulations of antibody (Figure 9). - APBS_antibody: PQR file of the system and DX file of the surface potential, for both the atomistic and CANVAS systems (Figure 10). - SASA_antibody: files containing the per-residue solvent accessible surface area of the hinge region of the antibody for each conformational cluster, in the atomistic and CANVAS simulations (Figure 11). - RMSIP_antibody: RMSIP between the essential subspaces computed from the atomistic and CANVAS simulations (Figure S3). - rgyr_antibody: files containing the radii of gyration of the antibody for each conformational cluster, in the atomistic and CANVAS simulations (Figure S4). - ake_AA.mp4: video of the all-atom simulation of adenylate kinase - ake_canvas.mp4: video of the canvas simulation of adenylate kinase
DOI: 10.5281/zenodo.7225086
title: Project files provided as supporting information to the manuscript "Fast, accurate, and system-specific variable-resolution modelling of proteins"

description: Project files provided as supporting information to the manuscript "Fast, accurate, and system-specific variable-resolution modelling of proteins". The dataset contains the following files: - RMSD_adk: files containing the root-mean-square deviation computed on the C-alpha atoms/beads in the atomistic and CANVAS simulations of adk (Figure 6). - RMSF_adk: files containing the root-mean-square fluctuations of the C-alpha atoms/beads in the atomistic and CANVAS simulations of adk (Figure 6). - APBS_adk: PQR file of the system and DX file of the surface potential, for both the atomistic and CANVAS systems (Figure 7). - SASA_antibody: files containing the per-residue solvent accessible surface area of the atomistic region of the ake protein, in the atomistic and CANVAS simulations (Figure 8). - RMSF_antibody: files containing the root-mean-square fluctuations of the C-alpha atoms/beads in the atomistic and CANVAS simulations of antibody (Figure 9). - APBS_antibody: PQR file of the system and DX file of the surface potential, for both the atomistic and CANVAS systems (Figure 10). - SASA_antibody: files containing the per-residue solvent accessible surface area of the hinge region of the antibody for each conformational cluster, in the atomistic and CANVAS simulations (Figure 11). - RMSIP_antibody: RMSIP between the essential subspaces computed from the atomistic and CANVAS simulations (Figure S3). - rgyr_antibody: files containing the radii of gyration of the antibody for each conformational cluster, in the atomistic and CANVAS simulations (Figure S4). - ake_AA.mp4: video of the all-atom simulation of adenylate kinase - ake_canvas.mp4: video of the canvas simulation of adenylate kinase
DOI: 10.5258/soton/d2287
title: Dataset for to support the journal article 'Elastomeric sandpaper replicas as model systems for investigating elasticity, roughness and associated drag in a marine biofilm flow cell'

description: Dataset to support publication to Ocean Engineering: Elastomeric sandpaper replicas as model systems for investigating elasticity, roughness and associated drag in a marine biofilm flow cell. This work was funded by a DTP ESPRC grant EP/R513325/1 to the University of Southampton with partial funding from NBIC/BBSRC 01POC18032 and AkzoNobel.
DOI: 10.6084/m9.figshare.21360555
title: SI Appendix Tables

description: SI Appendix Tables
DOI: 10.6084/m9.figshare.21360555.v1
title: SI Appendix Tables

description: SI Appendix Tables
DOI: 10.6084/m9.figshare.21360498
title: Titanium particles modulate lymphocyte and macrophage polarization in peri-implant gingival tissues

description: RNAseq data to show the effect of Titanium on implant failure.
DOI: 10.6084/m9.figshare.21360498.v1
title: Titanium particles modulate lymphocyte and macrophage polarization in peri-implant gingival tissues

description: RNAseq data to show the effect of Titanium on implant failure.
DOI: 10.24396/ordar-104
title: Effective porosity and sonic data at IODP NanTroSEIZE Site C0002

description: CEC_porosity_sample_data.csv: CEC, effective porosity, clay-bound water content, mercury injection capillary pressure measured on samples collected during IODP Expeditions 315, 338, 348 and 358 at Site C0002. Prediction_Vp_samples.csv, Prediction_Vp_from_effective_porosity_profile.csv: Modeled Vp from effective porosity measured on samples and exponential decay trend. Prediction_Vs_C0002A.csv, Prediction_Vs_C0002F.csv, Prediction_Vs_C0002P.csv, Prediction_Vs_C0002S.csv: Modeled Vs. Prediction_Phi_eff_C0002A.csv, Prediction_Phi_eff_C0002F.csv, Prediction_Phi_eff_C0002P.csv, Prediction_Phi_eff_C0002S_Ve.csv: Modeled effective porosity from Vp.
DOI: 10.5519/qd.7rff7le7
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.7225109
title: PhD materials and outputs

description: All structural outputs in my PhD thesis
DOI: 10.5281/zenodo.7225110
title: PhD materials and outputs

description: All structural outputs in my PhD thesis
DOI: 10.5281/zenodo.7225182
title: PhD materials and outputs

description: All structural outputs in my PhD thesis
DOI: 10.5445/ir/1000151546
title: Multivariate time series dataset of milling 16MnCr5 for anomaly detection

description: The dataset was recorded during milling of 16MnCr5. Due to artificially introduced, though realistic anoma-lies in the workpiece the dataset can be applied for anomaly detection. Furthermore, milling tools with two different diameters where used which led to a dataset eligible for transfer learning.
DOI: 10.6084/m9.figshare.21360594
title: Paeonia ostii Genome Annotation

description: Paeonia ostii Genome Annotation for paper "Genomic basis and evolutionary adaptation of giga-chromosome and giga-genome of tree peony Paeonia ostii " (Accepted by NC)
DOI: 10.6084/m9.figshare.21360594.v1
title: Paeonia ostii Genome Annotation

description: Paeonia ostii Genome Annotation for paper "Genomic basis and evolutionary adaptation of giga-chromosome and giga-genome of tree peony Paeonia ostii " (Accepted by NC)
DOI: 10.5281/zenodo.7225201
title: MasterFile Core SER-01

description: This Master File presents the paleomagnetic data for Core SER-01 from Sergipe-Alagoas Basin, NE Brazil. This data was published in the research article "<em>Paleomagnetic results of Early Cretaceous sediments from South Atlantic Ocean: Implications for paleosecular variation and relative paleointensity". </em>
DOI: 10.5281/zenodo.7225200
title: MasterFile Core SER-01

description: This Master File presents the paleomagnetic data for Core SER-01 from Sergipe-Alagoas Basin, NE Brazil. This data was published in the research article "<em>Paleomagnetic results of Early Cretaceous sediments from South Atlantic Ocean: Implications for paleosecular variation and relative paleointensity". </em>
DOI: 10.23729/60f2bc58-eea2-4f68-990d-1b02377f9145
title: Robottibussin energiankulutusdata ja ajopäiväkirja

description: Aineisto koostuu Excel-tiedostoihin kerätystä datasta joka liittyy robottibussin energiakulutukseen ja pävittäisiin ajosuorituksiin mySMARTLife ja Helsinki RobobusLine -hankkeissa tehtyihin robottibussipilotteihin. Energiankulutusdata on kerätty robottibussin latausenergiasta. Robottibussia ladattiin aina operointiaikoiken ulkopuolella reitin läheisyydessä sijaitsevassa säilytys- ja latauspaikassa. Vuoden 2018 osalta latauspaikka oli Kivikon hiihtohallilla ja vuoden 2019 pilotin osalta Kalasatamassa kauppakeskus Redin lastauslaiturilla/pysäköintihallissa. Ajosuorituksilla tarkoitetaan eräänlaiseen ajopäiväkirjaan kirjattuja ajosuortitteita joissa kuvataan suunnitellut ja toteutuneet päivittäiset ajot. Tarkasteltavia tietoja ovat aika, lähdöt, tunnit, ajopäivät, ajoetut kilometrit, matkujamäärät, akun varaus alussa sekä lopussa ja sähkönkulutus (latausenergiasta) ajopäiville laskettuna. Datasetti sisältää energiamittarin kautta suoraan saadut Excel-tiedostot sekä ajopäiväkirja-Excel-tiedoston johon on koostettu energiadatat sekä muut mainitut tiedot päiväkohtaisesti. Aineisto on kerätty osana kahta projektia: mySMARTLife (Horisontti 2020) ja Helsinki RobobusLine (Helsingin innovaatiorahasto).
DOI: 10.6084/m9.figshare.20747248
title: NL_vir data

description: Dataset accompanying the paper "Diversity and ecology of Caudoviricetes phages with genome terminal repeats in fecal metagenomes from four Dutch cohorts" by Gulyaeva et al.
DOI: 10.23729/493dbbba-ea91-4188-ad04-74ddfd1e6619
title: Robottibussipilottien käyttäjätutkimus mySMARTLife-hanke

description: Aineisto koostuu Helsingin Kivikossa 2018 ja Kalasatamassa 2019 kerätystä käyttäjätutkimusaineistosta robottibussipilottien yhteydessä. Matkustajat pystyivät nousemaan robottibussin (Navya Autonom Shuttle) kyytiin vapaasti sen liikennöintiaikoina ja käyttäjille annettiin satunnaisesti täytettäväksi tabletilla kysely robottibussikokemuksesta ja suhtautumisesta tulevaisuuden liikkumisratkaisuihin. Vastaukset käsiteltiin tilastollisesti, jolloin yksittäisiä vastauksia ei voitu erottaa toisistaan. Aineistossa on eritelty Kivikon ja Kalasataman kyselyt eri kansioihin ja kysymykset sekä vastaukset ovat eri tiedostoina. Kyselytutkimuksesta on kunkin pilotin osalta kaksi eri versiota, englannin- ja suomenkielinen PDF-tiedostoina. Vastaukset ovat Excel-muodossa. Käyttäjäkokemustutkimuksen lisäksi aineistossa on matkustajakysely jonka tarkoituksena oli selvittää että millä kulkumuodolla matkustaja oli tullut robobussin kyytiin ja oliko se osana matkustajan matkaketjua. Tällä kyselyllä selvitettiin myös kokonaismatkustajamäärät. Aineistoon pääsyyn voi pyytää lupaa. Aineisto on kerätty osana kahta projektia: mySMARTLife (Horisontti 2020) ja Helsinki RobobusLine (Helsingin innovaatiorahasto).
DOI: 10.6084/m9.figshare.21342473
title: SourceData

description: Source histology image data from reveley et al 2022 " Diffusion MRI Anisotropy in the Cerebral Cortex is Determined by Unmyelinated Tissue Features"
DOI: 10.6084/m9.figshare.21342473.v1
title: SourceData

description: Source histology image data from reveley et al 2022 " Diffusion MRI Anisotropy in the Cerebral Cortex is Determined by Unmyelinated Tissue Features"
DOI: 10.34740/kaggle/dsv/4352480
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.6084/m9.figshare.19886627
title: Variability of retinopathy consequent upon novel mutations in LAMA1

description: Bi-allelic mutations in LAMA1 (laminin 1) (OMIM # 150320) cause Poretti-Boltshauser Syndrome (PTBHS), a rare non-progressive cerebellar dysplasia disorder with ophthalmic manifestations including oculomotor apraxia, high myopia, and retinal dystrophy. Only 38 variants, nearly all loss of function have been reported. Here, we describe novel LAMA1 variants and detailed retinal manifestations in two unrelated families. Whole-genome sequencing was conducted on three siblings of a consanguineous family with myopia and retinal dystrophy and on a child from an unrelated non-consanguineous couple. Clinical evaluation included full ophthalmic examination, detailed colour, autofluorescence retinal imaging, retinal optical coherence tomography (OCT), fluorescein angiography under anesthesia, and pattern and full-field electroretinography. Genetic analysis revealed a novel homozygous LAMA1 frameshift variant, c.1492del p.(Arg498Glyfs *25), in the affected siblings in family 1 and a novel frameshift c.3065del p.(Gly1022Valfs *2) and a deletion spanning exons 17–23 in an unrelated individual in family 2. Two of the three siblings and the unrelated child had oculomotor apraxia in childhood; none of the siblings had symptoms of other neurological dysfunction as adults. All four had myopia. The affected siblings had a qualitatively similar retinopathy of wide-ranging severity. The unrelated patient had a severe abnormality of retinal vascular development, which resulted in vitreous haemorrhage and neovascular glaucoma in the left eye and a rhegmatogenous retinal detachment in the right eye. This report describes the detailed retinal structural and functional consequences of LAMA1 deficiency in four patients from two families, and these exhibit significant variability with evidence of both retinal dystrophy and abnormal and incomplete retinal vascularisation.
DOI: 10.5281/zenodo.6631305
title: Event Registry dataset texts with OCR degradations and synthesised segmentation

description: This is the text of the Event Registrt dataset dedicated to fake news detection that has been updated to be used in event detection. Rupnik, Jan, Andrej Muhic, Gregor Leban, Primoz Skraba, Blaz Fortuna, et Marko Grobelnik. 2016. « News Across Languages - Cross-Lingual Document Similarity and Event Tracking ». <em>Journal of Artificial Intelligence Research</em> 55 (janvier): 283‑316. https://doi.org/10.1613/jair.4780. Miranda, Sebastião, Artūrs Znotiņš, Shay B. Cohen, et Guntis Barzdins. 2018. « Multilingual Clustering of Streaming News ». In <em>2018 Conference on Empirical Methods in Natural Language Processing</em>, 4535‑44. Brussels, Belgium: Association for Computational Linguistics. https://www.aclweb.org/anthology/D18-1483/. Guillaume Bernard. (2022). Event Registry titles only dataset with multiple extracted features (both sparse and dense) (1.0) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.6630447 Some degradations are applied using the DocCreator [1] tool in order to degrade the text of the tweets and to reproduce some common errors found in OCRised documents [2]. [1]: Journet, Nicholas, Muriel Visani, Boris Mansencal, Kieu Van-Cuong, et Antoine Billy. 2017. « DocCreator: A New Software for Creating Synthetic Ground-Truthed Document Images ». <em>Journal of Imaging</em> 3 (4): 62. https://doi.org/10.3390/jimaging3040062. [2]: Linhares Pontes, Elvys, Ahmed Hamdi, Nicolas Sidere, et Antoine Doucet. 2019. « Impact of OCR Quality on Named Entity Linking ». In <em>Digital Libraries at the Crossroads of Digital Information for the Future</em>, 11853:102‑15. Lecture Notes in Computer Science. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-030-34058-2_11. The results of the OCR degradations are as follow: Event Registry CER/WER Without Character degradation Phantom degradation Bleed Blur All Event Registry CER 0.282 4.154 0.274 0.275 0.582 4.577 Event Registry WER 0.552 16.364 0.551 0.548 1.159 16.974
DOI: 10.5281/zenodo.6631304
title: Event Registry dataset texts with OCR degradations and synthesised segmentation

description: This is the text of the Event Registrt dataset dedicated to fake news detection that has been updated to be used in event detection. Rupnik, Jan, Andrej Muhic, Gregor Leban, Primoz Skraba, Blaz Fortuna, et Marko Grobelnik. 2016. « News Across Languages - Cross-Lingual Document Similarity and Event Tracking ». <em>Journal of Artificial Intelligence Research</em> 55 (janvier): 283‑316. https://doi.org/10.1613/jair.4780. Miranda, Sebastião, Artūrs Znotiņš, Shay B. Cohen, et Guntis Barzdins. 2018. « Multilingual Clustering of Streaming News ». In <em>2018 Conference on Empirical Methods in Natural Language Processing</em>, 4535‑44. Brussels, Belgium: Association for Computational Linguistics. https://www.aclweb.org/anthology/D18-1483/. Guillaume Bernard. (2022). Event Registry titles only dataset with multiple extracted features (both sparse and dense) (1.0) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.6630447 Some degradations are applied using the DocCreator [1] tool in order to degrade the text of the tweets and to reproduce some common errors found in OCRised documents [2]. [1]: Journet, Nicholas, Muriel Visani, Boris Mansencal, Kieu Van-Cuong, et Antoine Billy. 2017. « DocCreator: A New Software for Creating Synthetic Ground-Truthed Document Images ». <em>Journal of Imaging</em> 3 (4): 62. https://doi.org/10.3390/jimaging3040062. [2]: Linhares Pontes, Elvys, Ahmed Hamdi, Nicolas Sidere, et Antoine Doucet. 2019. « Impact of OCR Quality on Named Entity Linking ». In <em>Digital Libraries at the Crossroads of Digital Information for the Future</em>, 11853:102‑15. Lecture Notes in Computer Science. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-030-34058-2_11. The results of the OCR degradations are as follow: Event Registry CER/WER Without Character degradation Phantom degradation Bleed Blur All Event Registry CER 0.282 4.154 0.274 0.275 0.582 4.577 Event Registry WER 0.552 16.364 0.551 0.548 1.159 16.974