cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24793563.v1
title: Diversifying crop rotation increases food production while reducing net greenhouse gas emissions and benefiting soil health

description: This dataset includes six yeas field experiment raw data: crop yield, economic benefit, protein yield, greenhouse gas flux, soil properties, soil microbial community.

The sequencing data of soil microbial has been submitted to the NCBI (https://www.ncbi.nlm.nih.gov/), which are publicly available under accession no. SRR26083954-26083974 (16S rRNA) and SRR26083997-26084017 (ITS).
DOI: 10.6084/m9.figshare.24249760
title: Quantum plasmonics pushes chiral sensing limit to single molecules: a paradigm for chiral biodetections

description: This is the NMR datasets support of the publication entitled "Quantum plasmonics pushes chiral sensing limit to single molecules: a paradigm for chiral biodetections" in Nature Communications It can only be viewed with TopSpin
DOI: 10.6084/m9.figshare.24217176
title: Reprogramming biocatalytic futile cycles through computational engineering of stereochemical promiscuity to create an amine racemase

description: Raw data for figures
DOI: 10.6084/m9.figshare.24770940.v1
title: The Hippo-YAP signaling pathway drives CD24-mediated immune evasion in esophageal squamous cell carcinoma via macrophage phagocytosis

description: Uncropped original western blots used in the manuscript.
DOI: 10.6084/m9.figshare.24793563
title: Diversifying crop rotation increases food production while reducing net greenhouse gas emissions and benefiting soil health

description: This dataset includes six yeas field experiment raw data: crop yield, economic benefit, protein yield, greenhouse gas flux, soil properties, soil microbial community.

The sequencing data of soil microbial has been submitted to the NCBI (https://www.ncbi.nlm.nih.gov/), which are publicly available under accession no. SRR26083954-26083974 (16S rRNA) and SRR26083997-26084017 (ITS).
DOI: 10.6084/m9.figshare.24770940
title: The Hippo-YAP signaling pathway drives CD24-mediated immune evasion in esophageal squamous cell carcinoma via macrophage phagocytosis

description: Uncropped original western blots used in the manuscript.
DOI: 10.6084/m9.figshare.24865410
title: Supplementary Material for: COMPARISON OF ULTRASOUND-GUIDED UMBILICAL VENOUS CATHETER INSERTION WITH BLIND METHOD – A RANDOMIZED CONTROLLED TRIAL

description: Introduction: Ultrasonography (USG) can be used in neonates to manipulate and place the umbilical catheter in correct position. Though chest radiograph (CXR) is the gold standard, a non-invasive method like USG without radiation exposure may be an alternative bedside armamentarium to the clinician. The purpose of the study was to evaluate whether USG-guided umbilical venous catheter (UVC) insertion is superior to the conventional method for successful insertion of UVC. 
Method: The neonates born between 25-42 weeks of gestation requiring parenteral fluids and admission to neonatal intensive care unit between September 2020 to November 2022, were randomized in two weight-based strata: ≤1200 and &gt; 1200 grams. USG guided UVC insertion was done in intervention group and blind UVC insertion was done in the control group.
Results: Out of 112 enrolled neonates, 58 were in the USG guided group and 54 in the blind group. There was no significant difference in failure rate between the intervention and control groups [20% vs 29% (RR - 0.69, 95% CI-0.36-1.33)]. The sensitivity and specificity of USG in locating tip position were 97% and 46.8%, respectively. The mean procedure time in USG and blind group was 8.9 and 8.3 minutes respectively (P value-0.56).
Conclusion: USG does not reduce the failure rates during the insertion of umbilical catheters. However, being a safe, noninvasive procedure, it can be considered a rescue modality to CXR in NICUs equipped with portable USG for guiding UVC insertion.
DOI: 10.6084/m9.figshare.24851025
title: Supplementary Material for: Novel digenic variants in COL4A4 and COL4A5 causing X-linked Alport Syndrome

description: Introduction: Alport syndrome (AS) is a hereditary, progressive kidney disease characterized by structural abnormalities and dysfunction of the glomerular basement membrane (GBM). AS is classified as X-linked, autosomal, and digenic. The number of cases of digenic AS has increased, but the genotype-phenotype correlation of patient with digenic AS is still unclear. Here, we present a case of digenic AS with novel digenic missense variants in COL4A4 (c.827G&gt;C, p.Gly276Ala) and COL4A5 (c.4369G&gt;C, p.Gly1457Arg).
Case presentation: The patient was a 29-year-old Japanese man suffering from persistent microscopic hematuria and proteinuria without kidney function impairment. Kidney biopsy showed focal interstitial foam cell infiltration, global and segmental glomerulosclerosis. Immunofluorescence staining for collagen IV α5 was almost negative in the GBM and Bowman’s capsule. Electron microscopy revealed irregular thickening with lamellation and segmental thinning of the GBM. Clinical and pathological findings were consistent with AS. 
Comprehensive next-generation sequencing revealed a heterozygous missense variant in COL4A4 (c.827G&gt;C, p.Gly276Ala) in exon 1 and a hemizygous missense variant in COL4A5 (c.4369G&gt;C, p.Gly1457Arg) in exon 49 on the patient’s paternal and maternal allele, respectively. The same digenic variants were detected in his sister and she also showed a similar phenotype. After treatment with angiotensin-converting enzyme inhibitors, proteinuria decreased from 2.3 to 1.1 g/g Creatinine, but occult blood persisted. During follow-up, kidney function has been preserved.
Conclusion: The novel genotype of our case provides more information on the genotype-phenotype correlation of digenic XLAS, although long-term follow up is required. The findings in the present case also indicate the importance of genetic tests for family members of a patient diagnosed with digenic AS.
DOI: 10.6084/m9.figshare.24851025.v1
title: Supplementary Material for: Novel digenic variants in COL4A4 and COL4A5 causing X-linked Alport Syndrome

description: Introduction: Alport syndrome (AS) is a hereditary, progressive kidney disease characterized by structural abnormalities and dysfunction of the glomerular basement membrane (GBM). AS is classified as X-linked, autosomal, and digenic. The number of cases of digenic AS has increased, but the genotype-phenotype correlation of patient with digenic AS is still unclear. Here, we present a case of digenic AS with novel digenic missense variants in COL4A4 (c.827G&gt;C, p.Gly276Ala) and COL4A5 (c.4369G&gt;C, p.Gly1457Arg).
Case presentation: The patient was a 29-year-old Japanese man suffering from persistent microscopic hematuria and proteinuria without kidney function impairment. Kidney biopsy showed focal interstitial foam cell infiltration, global and segmental glomerulosclerosis. Immunofluorescence staining for collagen IV α5 was almost negative in the GBM and Bowman’s capsule. Electron microscopy revealed irregular thickening with lamellation and segmental thinning of the GBM. Clinical and pathological findings were consistent with AS. 
Comprehensive next-generation sequencing revealed a heterozygous missense variant in COL4A4 (c.827G&gt;C, p.Gly276Ala) in exon 1 and a hemizygous missense variant in COL4A5 (c.4369G&gt;C, p.Gly1457Arg) in exon 49 on the patient’s paternal and maternal allele, respectively. The same digenic variants were detected in his sister and she also showed a similar phenotype. After treatment with angiotensin-converting enzyme inhibitors, proteinuria decreased from 2.3 to 1.1 g/g Creatinine, but occult blood persisted. During follow-up, kidney function has been preserved.
Conclusion: The novel genotype of our case provides more information on the genotype-phenotype correlation of digenic XLAS, although long-term follow up is required. The findings in the present case also indicate the importance of genetic tests for family members of a patient diagnosed with digenic AS.
DOI: 10.5281/zenodo.7670210
title: Marine mammal acoustic presence - South Orkney Island 2016 & 2017

description: Data used in study looking at the marine mammal species diversity and habitat use at South Orkney Island through passive acoustic monitoring. 


File description 



	
2016_dailyAP_rawData.csv: countdata of the number of hours per day containing at least one species-specific vocalization during the recording period in 2016
	
2017_dailyAP_rawData.csv: countdata of the number of hours per day containing at least one species-specific vocalization during the recording period in 2017
	
data16_20.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 20 Hz and source level of 189 db, in 2016
	
data17_20.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 20 Hz and source level of 189 db, in 2017
	
data16_100.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 100 Hz and source level of 163 db, in 2016
	
data17_100.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 100 Hz and source level of 163 db, in 2017
	
data16_200.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 200 Hz and source level of 163 db, in 2016
	
data17_200.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 200 Hz and source level of 163 db, in 2017
	
GAMM_modelling.R : R code
description: This study was financed by the Norwegian Institute of Marine Research (IMR) project KRILL (project no, 14246), and AURAL recorder that collected the acoustics records in this study was financed by NFR grants (no. 222798) to Kit M. Kovacs (Norwegian Polar Institute).
DOI: 10.5281/zenodo.7670211
title: Marine mammal acoustic presence - South Orkney Island 2016 & 2017

description: Data used in study looking at the marine mammal species diversity and habitat use at South Orkney Island through passive acoustic monitoring. 


File description 



	
2016_dailyAP_rawData.csv: countdata of the number of hours per day containing at least one species-specific vocalization during the recording period in 2016
	
2017_dailyAP_rawData.csv: countdata of the number of hours per day containing at least one species-specific vocalization during the recording period in 2017
	
data16_20.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 20 Hz and source level of 189 db, in 2016
	
data17_20.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 20 Hz and source level of 189 db, in 2017
	
data16_100.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 100 Hz and source level of 163 db, in 2016
	
data17_100.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 100 Hz and source level of 163 db, in 2017
	
data16_200.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 200 Hz and source level of 163 db, in 2016
	
data17_200.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 200 Hz and source level of 163 db, in 2017
	
GAMM_modelling.R : R code
description: This study was financed by the Norwegian Institute of Marine Research (IMR) project KRILL (project no, 14246), and AURAL recorder that collected the acoustics records in this study was financed by NFR grants (no. 222798) to Kit M. Kovacs (Norwegian Polar Institute).
DOI: 10.6084/m9.figshare.24715848
title: Supplementary Material for: Association Between Estimated Pulse Wave Velocity and Incident Nonalcoholic Fatty Liver Disease in Korean Adults

description: Introduction: Nonalcoholic fatty liver disease (NAFLD) is associated with vascular dysfunction, one of the signs of which is arterial stiffness. Carotid–femoral pulse wave velocity (PWV), which is considered the gold standard measure of arterial stiffness, can be estimated using two commonly assessed clinical variables: age and blood pressure. This study aimed to evaluate the association between estimated PWV (ePWV) and the prevalence and incidence of NAFLD among Korean adults.
Methods: This study used data from the Ansan–Ansung Cohort Study, a subset of the Korean Genome and Epidemiology Study, and included 8,336 adult participants with and without NAFLD at baseline. The participants were subdivided into three tertile groups according to ePWV.
Results: At baseline, the prevalence of NAFLD was 10.5, 27.5, and 35.0% in the first (lowest), second, and third (highest) tertiles of ePWV, respectively. During the 18-year follow-up period, 2,467 (42.9%) incident cases of NAFLD were identified among 5,755 participants who did not have NAFLD at baseline. After adjustment for clinically relevant variables, participants in the second (adjusted hazard ratio [HR], 1.25; 95% confidence interval [CI], 1.12–1.40) and third (adjusted HR, 1.42; 95% CI, 1.24–1.64) tertiles of ePWV had a significantly higher risk of incident NAFLD than those in the first tertile.
Conclusion: Higher ePWV is independently associated with an elevated risk of NAFLD in the general population.
DOI: 10.6084/m9.figshare.24715848.v1
title: Supplementary Material for: Association Between Estimated Pulse Wave Velocity and Incident Nonalcoholic Fatty Liver Disease in Korean Adults

description: Introduction: Nonalcoholic fatty liver disease (NAFLD) is associated with vascular dysfunction, one of the signs of which is arterial stiffness. Carotid–femoral pulse wave velocity (PWV), which is considered the gold standard measure of arterial stiffness, can be estimated using two commonly assessed clinical variables: age and blood pressure. This study aimed to evaluate the association between estimated PWV (ePWV) and the prevalence and incidence of NAFLD among Korean adults.
Methods: This study used data from the Ansan–Ansung Cohort Study, a subset of the Korean Genome and Epidemiology Study, and included 8,336 adult participants with and without NAFLD at baseline. The participants were subdivided into three tertile groups according to ePWV.
Results: At baseline, the prevalence of NAFLD was 10.5, 27.5, and 35.0% in the first (lowest), second, and third (highest) tertiles of ePWV, respectively. During the 18-year follow-up period, 2,467 (42.9%) incident cases of NAFLD were identified among 5,755 participants who did not have NAFLD at baseline. After adjustment for clinically relevant variables, participants in the second (adjusted hazard ratio [HR], 1.25; 95% confidence interval [CI], 1.12–1.40) and third (adjusted HR, 1.42; 95% CI, 1.24–1.64) tertiles of ePWV had a significantly higher risk of incident NAFLD than those in the first tertile.
Conclusion: Higher ePWV is independently associated with an elevated risk of NAFLD in the general population.
DOI: 10.17909/sk3r-9g21
title: IUE data HD 176687
DOI: 10.5281/zenodo.8278597
title: Acoustic presence of marine mammals at the South Orkney Islands, Scotia Sea

description: Data used in study looking at the marine mammal species diversity and habitat use at South Orkney Island through passive acoustic monitoring. 


File description 



	
2016_dailyAP_rawData.csv: countdata of the number of hours per day containing at least one species-specific vocalization during the recording period in 2016
	
2017_dailyAP_rawData.csv: countdata of the number of hours per day containing at least one species-specific vocalization during the recording period in 2017
	
data16_20.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 20 Hz and source level of 189 db, in 2016
	
data17_20.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 20 Hz and source level of 189 db, in 2017
	
data16_100.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 100 Hz and source level of 163 db, in 2016
	
data17_100.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 100 Hz and source level of 163 db, in 2017
	
data16_200.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 200 Hz and source level of 163 db, in 2016
	
data17_200.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 200 Hz and source level of 163 db, in 2017
	
GAMM_revision.R : R code
description: This study was financed by the Norwegian Institute of Marine Research (IMR) project KRILL (project no, 14246), and AURAL recorder that collected the acoustics records in this study was financed by NFR grants (no. 222798) to Kit M. Kovacs (Norwegian Polar Institute).
DOI: 10.5281/zenodo.8278598
title: Acoustic presence of marine mammals at the South Orkney Islands, Scotia Sea

description: Data used in study looking at the marine mammal species diversity and habitat use at South Orkney Island through passive acoustic monitoring. 


File description 



	
2016_dailyAP_rawData.csv: countdata of the number of hours per day containing at least one species-specific vocalization during the recording period in 2016
	
2017_dailyAP_rawData.csv: countdata of the number of hours per day containing at least one species-specific vocalization during the recording period in 2017
	
data16_20.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 20 Hz and source level of 189 db, in 2016
	
data17_20.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 20 Hz and source level of 189 db, in 2017
	
data16_100.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 100 Hz and source level of 163 db, in 2016
	
data17_100.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 100 Hz and source level of 163 db, in 2017
	
data16_200.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 200 Hz and source level of 163 db, in 2016
	
data17_200.csv: proportion of daily acoustic marine mammal presence (0-1) and environmental variables within the audible area based on a sound frequency of 200 Hz and source level of 163 db, in 2017
	
GAMM_revision.R : R code
description: This study was financed by the Norwegian Institute of Marine Research (IMR) project KRILL (project no, 14246), and AURAL recorder that collected the acoustics records in this study was financed by NFR grants (no. 222798) to Kit M. Kovacs (Norwegian Polar Institute).
DOI: 10.6084/m9.figshare.24850752
title: Supplementary Material for: Early Manifestation of Benign Paroxysmal Positional Vertigo: A Case Report

description: we report a case of a 4.5-month-old infant with paroxysmal horizontal nystagmus, provoked by positioning. The clinical findings and successful resolution with repositioning manoeuvres indicate a diagnosis of right lateral semicircular canal lithiasis. This case report contributes to the existing literature by describing BPPV in the youngest age group, as no patients under 5 years have been previously reported. In order to document the case we also present a semi-automatic video analysis pipeline for analyzing abnormal eye movements in a home setting.
DOI: 10.6084/m9.figshare.24935157
title: Appendices for Health systems strengthening for decreasing neonatal mortality: an overview of systematic reviews

description: Appendix 1:PRISMA Checklist Appendix 2:Search Strategy of all databases Appendix 3:Reasons for exclusion at full text level
DOI: 10.6084/m9.figshare.24935157.v1
title: Appendices for Health systems strengthening for decreasing neonatal mortality: an overview of systematic reviews

description: Appendix 1:PRISMA Checklist Appendix 2:Search Strategy of all databases Appendix 3:Reasons for exclusion at full text level
DOI: 10.6084/m9.figshare.24793335
title: Supplementary Material for: Classification of colorectal cancer subtypes based on endoplasmic reticulum stress

description: Introduction: Endoplasmic reticulum stress (ERS) is associated with the occurrence and development of colorectal cancer (CRC).
Methods: One thousand nine CRC samples and 3 ERS gene sets from GEO database were used to screen and validate genes related to stage and prognosis of CRC. Twenty thousand five hundred thirty samples from the TCGA database validated the ERS genes related to prognosis. PPI network construction and coexpression analysis were used to investigate the correlation of genes. ConsensusClusterPlus analysis was used to classify CRC subtypes. Cox regression and the LASSO algorithm were used to screen ERS genes related to prognosis. HE staining, immunohistochemical staining and RT‒qPCR of 50 owner-central samples were used to verify the genes. The ERscore model was constructed based on the ERS genes related to prognosis. The nomogram model was used to verify that different subtypes of CRC patients have different prognosis.
Results: Fifty ERS differentially expressed genes related to CRC stage and 8 ERS model genes related to prognosis were screened. Three subtypes of CRC were classified based on the former 50 genes. The clinical characteristics were significantly different among the subtypes. The ERscore model was constructed based on the latter 8 genes, and its accuracy was verified by clinical samples. Finally, the nomogram was constructed based on ERscore, age and CRC stage, and the accuracy of the nomogram prediction was verified.
Conclusion: ERS-related genes can be used as classification criteria for CRC, and the related clinical characteristics of different CRC subtypes are different.