cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.dg0747n
title: Data from: Evaluation of drip irrigation system for water productivity and yield of rice

description: The use of drip irrigation in upland rice cultivation is a contemporary
 water-saving strategy however, inadequate evidence available related to
 consequential changes in water productivity on rice yield. The effects of
 distinctive drip irrigation treatments viz., differences in lateral
 distances [0.6, 0.8 and 1.0 m], dripper discharge rates [0.6 and 1.0 litre
 per hour], irrigation methods [surface and sub-surface] and the
 conventional aerobic rice production system (control) on, physiology and
 water productivity of rice were studied during summer 2012 and 2013. Grain
 yield significantly increased in sub-surface drip irrigation method laid
 out at 0.8 m lateral distance and in 1.0 litre per hour (lph) discharge
 rate (5389 kg ha-1) compared with control irrigation method (4181 kg
 ha-1). This treatment mount up dry matter partitioning, leaf
 photosynthesis as well as root oxidizing power. In addition, drip
 irrigation in aerobic rice production system had twice the water
 productivity and stimulates longer roots with higher density compared with
 control irrigation method. The sub-surface drip irrigation system with
 drippers/laterals of 0.8 m distance with flow rate 1.0 lph, in aerobic
 rice production system is a cost-effective method and had the potential to
 save water (27.0 %) without compromising for grain yield in comparison to
 control irrigation method. This could be the promising technology to be
 recommended for aerobic rice production system.
description: Dry matter partitioning
 coefficient,water budget and evapotranspiration data observed in drip
 irrigated rice cultivationDry matter partitioning
 coefficient (PC) of aerobic rice (Conventional) compared to drip
 irrigation with aerobic rice treatments. Crop evapotranspiration
 calculated for the cropping period. Total Water Applied (TWA: mm),
 Irrigated Water (IW: mm) and Effective Rainfall (ER: mm) of aerobic rice
 cultivated under drip and conventional practice.Data for
 publication.xlsx
DOI: 10.5061/dryad.1qd621b
title: Data from: A Decision Support System for assessing management interventions in a Mental Health ecosystem: the case of Bizkaia (Basque Country, Spain)

description: Evidence-informed strategic planning is a top priority in Mental Health
 (MH) due to the burden associated with this group of disorders and its
 societal costs. However, MH systems are highly complex, and decision
 support tools should follow a systems thinking approach that incorporates
 expert knowledge. The aim of this paper is to introduce a new Decision
 Support System (DSS) to improve knowledge on the health ecosystem,
 resource allocation and management in regional MH planning. The Efficient
 Decision Support-Mental Health (EDeS-MH) is a DSS that integrates an
 operational model to assess the Relative Technical Efficiency (RTE) of
 small health areas, a Monte-Carlo simulation engine (that carries out the
 Monte-Carlo simulation technique), a fuzzy inference engine prototype and
 basic statistics as well as system stability and entropy indicators. The
 stability indicator assesses the sensitivity of the model results due to
 data variations (derived from structural changes). The entropy indicator
 assesses the inner uncertainty of the results. RTE is multidimensional,
 that is, it was evaluated by using 15 variable combinations called
 scenarios. Each scenario, designed by experts in MH planning, has its own
 meaning based on different types of care. Three management interventions
 on the MH system in Bizkaia were analysed using key performance indicators
 of the service availability, placement capacity in day care, health care
 workforce capacity, and resource utilisation data of hospital and
 community care. The potential impact of these interventions has been
 assessed at both local and system levels. The system reacts positively to
 the proposals by a slight increase in its efficiency and stability (and
 its corresponding decrease in the entropy). However, depending on the
 analysed scenario, RTE, stability and entropy statistics can have a
 positive, neutral or negative behaviour. Using this information, decision
 makers can design new specific interventions/policies. EDeS-MH has been
 tested and face-validated in a real management situation in the Bizkaia MH
 system.
description: DataSet_BizkaiaIn this document we show the original data set of the Mental Health System of Bizkaia (Spain). Variables are classified in inputs and outputs. Mental Health Services has been standardized by using DESDE-LTC codification tool. Variables are organized in 4 groups: 1) Availability of Mental Health Services in each DMU. 2) Placement capacity according to the Maint Type of Care provided (Residential, Day and Outpatient care), 3) Workforce capacity: professionals that provide the Main Type of Care in the DMU. 4) Utilization indicators: discharges, readmissions and length of stay for residential acute hospital care, and incidence, prevalence and frequentation for outpatient care.
DOI: 10.5061/dryad.q684n
title: Data from: Caching for where and what: evidence for a mnemonic strategy in a scatter-hoarder

description: Scatter-hoarding animals face the task of maximizing retrieval of their
 scattered food caches while minimizing loss to pilferers. This demand
 should select for mnemonics, such as chunking, i.e. a hierarchical
 cognitive representation that is known to improve recall. Spatial
 chunking, where caches with the same type of content are related to each
 other in physical location and memory, would be one such mechanism. Here
 we tested the hypothesis that scatter-hoarding eastern fox squirrels
 (Sciurus niger) are organizing their caches in spatial patterns consistent
 with a chunking strategy. We presented 45 individual wild fox squirrels
 with a series of 16 nuts of four different species, either in runs of four
 of the same species or 16 nuts offered in a pseudorandom order. Squirrels
 either collected each nut from a different location or collected all nuts
 from a single location; we then mapped their subsequent cache
 distributions using GPS. The chunking hypothesis predicted that squirrels
 would spatially organize caches by nut species, regardless of presentation
 order. Our results instead demonstrated that squirrels spatially chunked
 their caches by nut species but only when caching food that was foraged
 from a single location. This first demonstration of spatial chunking in a
 scatter hoarder underscores the cognitive demand of scatter hoarding.
description: Data Caching for Where
 and WhatExcel file of overlap of
 cache areas by nut species in different experimental
 conditions.
DOI: 10.5061/dryad.67r06s0
title: Data from: Spatial population genetic structure of a bacterial parasite in close coevolution with its host

description: Knowledge of a species’ population genetic structure can provide insight
 into fundamental ecological and evolutionary processes including gene
 flow, genetic drift, and adaptive evolution. Such inference is of
 particular importance for parasites, as an understanding of their
 population structure can illuminate epidemiological and coevolutionary
 dynamics. Here we describe the population genetic structure of the
 bacterium Pasteuria ramosa, a parasite that infects planktonic crustaceans
 of the genus Daphnia. This system has become a model for investigations of
 host-parasite interactions and represents an example of coevolution via
 negative frequency-dependent selection (a.k.a. ‘Red Queen’ dynamics). To
 sample P. ramosa, we experimentally infected a panel of Daphnia hosts with
 natural spore banks from the sediments of 25 ponds throughout much of the
 species range in Europe and Western Asia. Using 12 polymorphic VNTR loci,
 we identified substantial genetic diversity both within and among
 localities that was structured geographically among ponds. Genetic
 diversity was also structured among host genotypes within ponds, though
 this pattern varied by locality, with P. ramosa at some localities
 partitioned into distinct host-specific lineages, and other localities
 where recombination had shuffled genetic variation among different
 infection phenotypes. Across the sample range, there was a pattern of
 isolation-by-distance, and principal components analysis coupled with
 Procrustes rotation identified congruence between patterns of genetic
 variation and geography. Our findings support the hypothesis that
 Pasteuria is an endemic parasite coevolving closely with its host. These
 results provide important context for previous studies of this model
 system and inform hypotheses for future research.
description: Pasteuria_ramosa_genotypesTab-delimited text file containing sample identification information and microsatellite genotypes used in the corresponding publication. The first row contains descriptive titles for each column. The first column contains entire unique sample identifier. The second column contains the locality of sample origin. The third column contains the Daphnia magna host clone. The fourth column contains the "resistotype" as defined in the paper. The fifth column contains the locality number code. Columns 6-17 contain genotype information (alleles) for each of the 12 microsatellite loci used in this study.
DOI: 10.5061/dryad.3555bh3
title: Data from: Functional outcomes of mutualistic network interactions: a community-scale study of frugivore gut passage on germination

description: 1. Current understanding of mutualistic networks is grounded largely in
 data on interaction frequency, yet mutualistic network dynamics are also
 shaped by interaction quality—the functional outcomes of individual
 interactions on reproduction and survival. The difficulty of obtaining
 data on functional outcomes has resulted in limited understanding of
 functional variation among a network’s pairwise species interactions, of
 the study designs that are necessary to capture major sources of
 functional variation, and of predictors of functional variation that may
 allow generalization across networks. 2. In this community-scale study, we
 targeted a key functional outcome in plant-frugivore networks: the impact
 of frugivore gut passage on seed germination. We used captive frugivore
 feeding trials and germination experiments in an island ecosystem,
 attaining species-level coverage across all extant native frugivores and
 the plants they consume to 1) assess sources of functional variation, 2)
 separate effects of pulp removal from those of scarification via gut
 passage, and 3) test trait-based correlates of gut passage effect sizes.
 3. We found antagonistic seed predation effects of a frugivore previously
 assumed to be a seed disperser, highlighting the need to consider
 functional outcomes rather than interaction frequency alone. The other
 frugivores each exhibited similar impacts for individual plant species,
 with benefits primarily caused by pulp removal rather than scarification,
 supporting the use of animal functional groups in this context. In
 contrast, plant species varied widely in impacts of gut passage on
 germination. Species with smaller seeds and more frugivore partners had
 larger benefits of gut passage, showing promise for network metrics and
 functional traits to predict functional variation among plants. 4.
 Synthesis. Combining network and demographic approaches, we assessed the
 degree and sources of variation in a key functional outcome of
 plant-frugivore interactions across an entire network. Using a detailed
 study design, our work shows how simpler study designs can capture primary
 sources of functional variation and that functional traits and network
 metrics may allow generalization across networks. Efficiently measuring
 and generalizing sources of functional variation within mutualistic
 networks will strengthen our ability to model network dynamics and predict
 mutualist responses to global change.
description: Data and
 codeThis zip file contains
 an RData object with data from the germination experiments on Saipan
 formatted for hierarchical Bayesian analysis implemented with the R code
 that is also in the zip file. Note that the user will need JAGS to be
 installed to run the model. Further comments in the R
 code.
DOI: 10.5061/dryad.pr11m
title: Data from: Prevalence of coronary artery disease evaluated by coronary CT angiography in women with mammographically detected breast arterial calcifications

description: To assess the correlation between breast arterial calcifications (BAC) on
 digital mammography and the extent of coronary artery disease (CAD)
 diagnosed with dual source coronary computed tomography angiography (CTA)
 in a population of women both symptomatic and asymptomatic for coronary
 artery disease. 100 consecutive women (aged 34 – 86 years) who underwent
 both coronary CTA and digital mammography were included in the study.
 Health records were reviewed to determine the presence of cardiovascular
 risk factors such as hypertension, hyperlipidemia, diabetes mellitus, and
 smoking. Digital mammograms were reviewed for the presence and degree of
 BAC, graded in terms of severity and extent. Coronary CTAs were reviewed
 for CAD, graded based on the extent of calcified and non-calcified plaque,
 and the degree of major vessel stenosis. A four point grading scale was
 used for both coronary CTA and mammography. The overall prevalence of
 positive BAC and CAD in the studied population were 12% and 29%,
 respectively. Ten of the 12 patients with moderate or advanced BAC on
 mammography demonstrated moderate to severe CAD as determined by coronary
 CTA. For all women, the positive predictive value of BAC for CAD was 0.83
 and the negative predictive value was 0.78. The presence of BAC on
 mammography appears to correlate with CAD as determined by coronary CTA
 (Spearman’s rank correlation coefficient = 0.48, p&lt;.000001). Using
 logistic regression, the inclusion of BAC as a feature in CAD predication
 significantly increased classification results (p=0.04).
description: Breast arterial
 calcifications and CAD, data
DOI: 10.5061/dryad.jt008
title: Data from: Reproductive isolation in a nascent species pair is associated with aneuploidy in hybrid offspring

description: Speciation may occur when the genomes of two populations accumulate
 genetic incompatibilities and/or chromosomal rearrangements that prevent
 inter-breeding in nature. Chromosome stability is critical for survival
 and faithful transmission of the genome, and hybridization can compromise
 this. However, the role of chromosomal stability on hybrid
 incompatibilities has rarely been tested in recently diverged populations.
 Here, we test for chromosomal instability in hybrids between nascent
 species, the ‘dwarf’ and ‘normal’ lake whitefish (Coregonus clupeaformis).
 We examined chromosomes in pure embryos, and healthy and malformed
 backcross embryos. While pure individuals displayed chromosome numbers
 corresponding to the expected diploid number (2n = 80), healthy
 backcrosses showed evidence of mitotic instability through an increased
 variance of chromosome numbers within an individual. In malformed
 backcrosses, extensive aneuploidy corresponding to multiples of the
 haploid number (1n = 40, 2n = 80, 3n = 120) was found, suggesting meiotic
 breakdown in their F1 parent. However, no detectable chromosome
 rearrangements between parental forms were identified. Genomic instability
 through aneuploidy thus appears to contribute to reproductive isolation
 between dwarf and normal lake whitefish, despite their very recent
 divergence (approx. 15–20 000 generations). Our data suggest that genetic
 incompatibilities may accumulate early during speciation and limit
 hybridization between nascent species.
description: Chromosome_counts_dataThese are all the raw chromosome counts used for statistics in the article.
DOI: 10.5061/dryad.8kc81
title: Data from: Indirect effects of parasitism: costs of infection to other individuals can be greater than direct costs borne by the host

description: Parasitic infection has a direct physiological cost to hosts but may also
 alter how hosts interact with other individuals in their environment. Such
 indirect effects may alter both host fitness and the fitness of other
 individuals in the host's social network, yet the relative impact of
 direct and indirect effects of infection are rarely quantified. During
 reproduction, a host's social environment includes family members who
 may be in conflict over resource allocation. In such situations, infection
 may alter how resources are allocated, thereby redistributing the costs of
 parasitism between individuals. Here, we experimentally reduce parasite
 burdens of parent and/or nestling European shags (Phalacrocorax
 aristotelis) infected with Contracaecum nematodes in a factorial design,
 then simultaneously measure the impact of an individual's infection
 on all family members. We found no direct effect of infection on parent or
 offspring traits but indirect effects were detected in all group members,
 with both immediate effects (mass change and survival) and longer-term
 effects (timing of parents’ subsequent breeding). Our results show that
 parasite infection can have a major impact on individuals other than the
 host, suggesting that the effect of parasites on population processes may
 be greater than previously thought.
description: Chick data
 (2011)Data from the year of
 anti-parasite treatment for each individual chick in the experiment:
 growth rate and survival, along with anti-parasite treatment group and
 unmanipulated traits such as hatch date, sex and rank.ChickData.csvParent data (2011)Data from the year of anti-parasite treatment measured for each individual adult in the experiment: mass at the start and end of the experiment, along with anti-parasite treatment group and unmanipulated traits such as hatch date and sex.ParentData.csvLong-term treatment effectsData measured in the year following anti-parasite treatment for each experimental parent: hatch date and several aspects of breeding success, along with treatment group and unmanipulated traits such as sex and initial hatch date.LongTermEffects.csv
DOI: 10.5061/dryad.kv3q7
title: Data from: Analytical performance, agreement and user-friendliness of six point of care testing urine analysers for urinary tract infection in general practice.

description: Objective: Various point-of-care testing (POCT) urine analysers are
 commercially available for routine urine analysis in general practice. The
 present study compares analytical performance, agreement and
 user-friendliness of six different POCT urine analysers for diagnosing
 urinary tract infection in general practice. Setting: All testing
 procedures were performed at a diagnostic centre for primary care in the
 Netherlands. Urine samples were collected at four general practices.
 Primary and secondary outcome measures: Analytical performance and
 agreement of the POCT analysers regarding nitrite, leucocytes and
 erythrocytes, with the laboratory reference standard, was the primary
 outcome measure, and analysed by calculating sensitivity, specificity,
 positive and negative predictive value, and Cohen's κ coefficient for
 agreement. Secondary outcome measures were the user-friendliness of the
 POCT analysers, in addition to other characteristics of the analysers.
 Results: The following six POCT analysers were evaluated: Uryxxon Relax
 (Macherey Nagel), Urisys 1100 (Roche), Clinitek Status (Siemens), Aution
 11 (Menarini), Aution Micro (Menarini) and Urilyzer (Analyticon).
 Analytical performance was good for all analysers. Compared with
 laboratory reference standards, overall agreement was good, but differed
 per parameter and per analyser. Concerning the nitrite test, the most
 important test for clinical practice, all but one showed perfect agreement
 with the laboratory standard. For leucocytes and erythrocytes specificity
 was high, but sensitivity was considerably lower. Agreement for leucocytes
 varied between good to very good, and for the erythrocyte test between
 fair and good. First-time users indicated that the analysers were easy to
 use. They expected higher productivity and accuracy when using these
 analysers in daily practice. Conclusions: The overall performance and
 user-friendliness of all six commercially available POCT urine analysers
 was sufficient to justify routine use in suspected urinary tract
 infections in general practice.
description: Compilation of
 publication dataThis Excel file contains
 all tables and the appendix present in the manuscript. There is no other
 data available.data
 Dryad.xlsx
DOI: 10.5061/dryad.24q8p
title: Data from: Global ecological success of Thalassoma fishes in extreme coral reef habitats

description: Phenotypic adaptations can allow organisms to relax abiotic selection and
 facilitate their ecological success in challenging habitats, yet we have
 relatively little data for the prevalence of this phenomenon at
 macroecological scales. Using data on the relative abundance of coral reef
 wrasses and parrotfishes (f. Labridae) spread across three ocean basins
 and the Red Sea, we reveal the consistent global dominance of extreme
 wave-swept habitats by fishes in the genus Thalassoma, with abundances up
 to 15 times higher than any other labrid. A key locomotor modification—a
 winged pectoral fin that facilitates efficient underwater flight in
 high-flow environments—is likely to have underpinned this global success,
 as numerical dominance by Thalassoma was contingent upon the presence of
 high-intensity wave energy. The ecological success of the most abundant
 species also varied with species richness and the presence of congeneric
 competitors. While several fish taxa have independently evolved winged
 pectoral fins, Thalassoma appears to have combined efficient high-speed
 swimming (to relax abiotic selection) with trophic versatility (to
 maximize exploitation of rich resources) to exploit and dominate extreme
 coral reef habitats around the world.
description: Fulton_etal_Thalassoma_global_successDensity of reef fishes of the family Labridae within the reef crest habitat at 11 global locations. Density of reef fishes of the family Labridae within the reef crest and back reef habitats across six reefs of the northern Great Barrier Reef. Maximum flow velocity data within reef crest and back reef habitats across six reefs of the northern Great Barrier Reef.Fulton_etal_Thalassoma_data(Dryad).xlsx