cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1295390.08fu
title: SH1295390.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1295391.08fu
title: SH1295391.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1295392.08fu
title: SH1295392.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1295393.08fu
title: SH1295393.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1295394.08fu
title: SH1295394.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1295395.08fu
title: SH1295395.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1295396.08fu
title: SH1295396.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.as446q
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Teinopalpus imperialis Hope, 1843"
 ]
}

 The dataset includes 29 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021356-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.txysgh
title: Occurrence Download

description: A dataset containing 324483 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.countrycode = 'JP'
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence."year" &gt;= 2000 AND occurrence."year" &lt;= 2024)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 324483 records were derived from 1272 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021351-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48370/ofd/p8a3ql
title: Myodes glareolus - 163336, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1994-07-16, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/y2rg-pt54
title: Cytomegaloviral disease, unspecified - Male, 50 - Tissue image [10110730048226451]

description: This is the histopathological image of BRAIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 50Clinical description: CMV pneumonia. Shock. Encephalitis.Gender: MaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter I - Certain infectious and parasitic diseasesDiagnosis: Cytomegaloviral disease, unspecifiedResult of the histopathological examination: The brain specimens show markers of encephalitis with glial-microglial nodules, rod-shaped glaze, neuronophagia and segmental dentation of the cerebral cortex. In the basal ganglia, there are small foci of incomplete necrosis, corresponding to healed inflammatory foci. Corpora amylacea periventricular deposits.
Atrophy of the brain and cerebellum cortex.Sample:Material: FFPECollecting method: Autopsy specimenTopography: EYE, BRAIN AND OTHER PARTS OF CENTRAL NERVOUS SYSTEMOrgan: BRAINTissue: Brain, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/3ntr-8f30
title: Pilomatrixoma, NOS - Male, 47 - Tissue image [9190729564894561]

description: This is the histopathological image of CONNECTIVE, SUBCUTANEOUS AND OTHER SOFT TISSUES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 47Clinical description: Suspicion of epidermal cyst.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: BASAL CELL NEOPLASMSDiagnosis: Pilomatrixoma, NOSResult of the histopathological examination: Pilomatrixoma.Sample:Material: FFPECollecting method: Excision of lesionsTopography: CONNECTIVE, SUBCUTANEOUS AND OTHER SOFT TISSUESOrgan: CONNECTIVE, SUBCUTANEOUS AND OTHER SOFT TISSUESTissue: Connective, subcutaneous and other soft tissues of upper limb and shoulderType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/7ez0-8w31
title: Basal cell carcinoma, NOS - Unknown, 78 - Tissue image [3290730016624411]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 78Clinical description: A patient with extensive BCC of the trunk was treated for one year with vismodegib, with an initial good response and a significant reduction in tumor mass. Recently there is a significant progression.Gender: UnknownDiagnosis:Classification: ICD-O_3.2Classification code: BASAL CELL NEOPLASMSDiagnosis: Basal cell carcinoma, NOSResult of the histopathological examination: Basal cell carcinoma of the skin. Resection margins are positive.Sample:Material: FFPECollecting method: Surgical biopsyTopography: SKINOrgan: SKINTissue: Skin of trunkType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/a9cb-w151
title: Mesoblastic nephroma - Male, 1 - Tissue image [5040730028027991]

description: This is the histopathological image of KIDNEY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 1Clinical description: Tumor of the kidney.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: COMPLEX MIXED AND STROMAL NEOPLASMSDiagnosis: Mesoblastic nephromaResult of the histopathological examination: Mesoblastic nephroma. IHC: CK AE1/3 (-), vimentin (+), WT 1- cytoplasmic reaction, CD 56 +, p53-, SMA+, desmin (-), synaptophysin (-), CD 99 (+), NSE (-), bcl 2 +/-, cyclin D1 (+), PAX 8 (-), EMA (-), CD 34 (-), Pan TRK (-)).
The hilar margin is positive.Sample:Material: FFPECollecting method: Surgical specimenTopography: URINARY TRACTOrgan: KIDNEYTissue: Kidney, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/3bb46z
title: Myodes glareolus - 16430, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1956-01-20, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/q1bj-pe10
title: Lobular carcinoma, NOS - Female, 70 - Tissue image [1013073002308171]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 70Clinical description: Tumor of left breast.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: DUCTAL AND LOBULAR NEOPLASMSDiagnosis: Lobular carcinoma, NOSResult of the histopathological examination: Lobular carcinoma of breast NHG2 (3+2+1: 0 mitoses/10HPF) (B5). CK7+, CK19+, e-cadherin-, ER+, PR-, HER2 1, Ki-67 5%.Sample:Material: FFPECollecting method: Vacuum-assisted biopsyTopography: BREASTOrgan: BREASTTissue: Breast, NOSType of staining: positive/IHCStaining: Not applicableAntibody: Ki-67Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/tg4bmd
title: Myodes glareolus - 73893, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-05-06, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/8hck-0708
title: LYMPH NODES, Lymph node face, head ,neck - Unknown, 62 - Tissue image [330073006938321]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 62Clinical description: 1. Surgical margin of the tumor - left the sublingual area.
2. Marginal gingiva.
3. Surgical margin of the mandible.
4. Tumor of the oral cavity.
5. Superficial submandibular lymph nodes.
6 - 14 - lymph nodes of the neck and fragments of the MOS.Gender: UnknownDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: The lymph node is free of cancer.Sample:Material: FFPECollecting method: Surgical specimenTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Lymph node face, head ,neckType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/ayde-7387
title: Anaplastic large cell lymphoma, ALK positive - Female, 68 - Tissue image [5030730017665221]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 68Clinical description: Multiple skin nodules of the trunk.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: MATURE T- AND NK-CELL LYMPHOMASDiagnosis: Anaplastic large cell lymphoma, ALK positiveResult of the histopathological examination: Anaplastic large T-cell lymphoma, ALK+.
IHC: LCA +, CD20 (-), CD3 (-), CD30 +, Ki67 approximately 100%, CKAE1/3 (-), Synaptophysin (-).
ALK1 +, EMA +, CD79a (-), PAX5 (-), CD5 +, bcl2 (-), CD2 +, CD138 (-), CD4 +, EBER (-).Sample:Material: FFPECollecting method: Surgical specimenTopography: SKINOrgan: SKINTissue: Skin of trunkType of staining: positive/IHCStaining: Not applicableAntibody: CD 138Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/5hvw-5y54
title: Carcinoma, undifferentiated, NOS - Female, 45 - Tissue image [322063002468831]

description: This is the histopathological image of OVARY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 45Clinical description: Tumor of the right ovary.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: EPITHELIAL NEOPLASMS, NOSDiagnosis: Carcinoma, undifferentiated, NOSResult of the histopathological examination: Undifferentiated carcinoma of the right ovary. IHC: vimentin (+), CK AE1/3 (+), Cam 5.2 (+), CK 7(+), CK 20 (-), EMA- focally +, PAX 8- focally (+), estrogen receptors (-), WT1 (-), p53-negative status, napsin A (-), HNF beta 1- focally (+), calretinin (-), podoplanin- focally (+), synaptophysin- focal weak reaction (+), chromogranin (-), inhibin (-), p16- negative status, TTF 1 (-), CEA (-), HMB 45 (-), Melan A (-), mammoglobin (-), GCDFP15 (-), CDX 2 (-), Ki 67 80%, mucikarmin- focally weak (+).Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: OVARYTissue: OvaryType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/snvr-dp06
title: Lobular carcinoma, NOS - Female, 45 - Tissue image [3200630011571591]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 45Clinical description: Palpable tumor of right breast. 18 x 8 mm hypoechoic spicular tumor on ultrasound.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: DUCTAL AND LOBULAR NEOPLASMSDiagnosis: Lobular carcinoma, NOSResult of the histopathological examination: Multifocal lobular carcinoma of breast NHG2 (3+2+1: 6 mitoses per 10 HPF_. E-cadherin -. Lobular neoplasia (LCIS, ALH, pagetoid spread). Metastases of carcinoma to axillary lymph nodes (3/4 lymph nodes).Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Upper-inner quadrant of breastType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/dsm7-8x78
title: Glioblastoma, NOS - Unknown, 33 - Tissue image [3290730016643591]

description: This is the histopathological image of BRAIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 33Clinical description: A tumor of the left cerebral hemisphere. Glioma?
Fragmented material of total size 1.5x1x0.5 cm.Gender: UnknownDiagnosis:Classification: ICD-O_3.2Classification code: GLIOMASDiagnosis: Glioblastoma, NOSResult of the histopathological examination: Glioblastoma, NOS; WHO G-IV. IHC: GFAP (+), vimentin (+), Olig2 (+), synaptophysin (-), NSE (-), IDH1/R132H (-), p53 expression high (about 20% of cells), Ki67 50%. IDH1/2 mutation testing is indicated.Sample:Material: FFPECollecting method: Surgical specimenTopography: EYE, BRAIN AND OTHER PARTS OF CENTRAL NERVOUS SYSTEMOrgan: BRAINTissue: Cerebral hemisphereType of staining: positive/IHCStaining: Not applicableAntibody: GFAPTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk