cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13980718.v1
title: Cryptic species diversity and molecular diagnosis of <i>Channa orientalis</i>; an endemic freshwater fish of Sri Lanka

description: Fish genetic resources and diversity are very important aspects of environmental management and fisheries and are vital for making decisions on their commercial exploitation as well as conservation. The snakehead fishes in the world have significant economic importance as food and ornamental fish. A clear understanding of species’ taxonomic status and genetic diversity is important for the utilization and implementation of conservation and management practices. <i>Channa orientalis</i> is a snakehead endemic to Sri Lanka that is heavily utilized in the ornamental fish export trade. Its genetic diversity has not yet been fully understood and it is difficult to distinguish it from closely resembling species. Therefore, we examined the genetic diversity of <i>C. orientalis</i> and developed a DNA-based marker that permits accurate, low cost, and reliable identification of <i>C. orientalis</i>. Determination of genetic diversity was mainly carried out through genetic analysis of the mitochondrial <i>cytochrome c oxidase subunit 1</i> (<i>MT-CO1</i>) gene. The development of the DNA-based marker for the identification of <i>C. orientalis</i> was done through Polymerase Chain Reaction and Restriction Fragment Length Polymorphism (PCR-RFLP) analysis. Our analyses confirmed the presence of two distinct genetically divergent and geographically separated lineages of <i>C. orientalis</i> in Sri Lanka. The fast cost-effective gel-based PCR-RFLP marker method developed by us was successful in diagnosing <i>C. orientalis</i> from its closely resembling species. Thus, we believe our findings on the cryptic diversity and diagnostic methods will have important implications for the conservation and management of this endemic species.
DOI: 10.3886/e128421v2-83060
title: The Second OMGYES Women’s Pleasure Study - Angling, Rocking, Shallowing and Pairing Items

description: The 2018 OMGYES Women’s Pleasure Study is a nationally representative study that examines women's preferences for internal penetration and stimulation. The data set includes population weights, demographic information and four approaches to stimulation/penetration: angling, rocking, shallowing and pairing. This study defines each technique and describes its prevalence among U.S. adult women. Participants were recruited via the Ipsos KnowledgePanel®.
DOI: 10.7284/139777
title: Splitbeam Echosounder data collected during research cruise AR43 using a Kongsberg EK80 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.21227/wpfq-g656
title: February-7-Rivera-Sergio

description: February-7-Rivera-Sergio
DOI: 10.6084/m9.figshare.14371607
title: liver_transcriptome_ReadCount

description: 24 liver samples were detected using RNA-seq
DOI: 10.6084/m9.figshare.14371607.v1
title: liver_transcriptome_ReadCount

description: 24 liver samples were detected using RNA-seq
DOI: 10.5281/zenodo.4662752
title: Subastas de la Diputación Foral de Gipuzkoa

description: Los dos archivos contienen las subastas pendientes y las celebradas, respectivamente, y han sido obtenidos al realizar web scraping sobre la página web de la Diputación Foral de Gipuzkoa. En caso de querer estudiar más a fondo el proceso mediante el cual fueron recogidos ambos conjuntos de datos, se recomienda visitar la web del proyecto en el siguiente enlace: https://github.com/zumaiaUOC/tipologia-PRA1-subastas-diputacion
DOI: 10.5281/zenodo.4662751
title: Subastas de la Diputación Foral de Gipuzkoa

description: Los dos archivos contienen las subastas pendientes y las celebradas, respectivamente, y han sido obtenidos al realizar web scraping sobre la página web de la Diputación Foral de Gipuzkoa. En caso de querer estudiar más a fondo el proceso mediante el cual fueron recogidos ambos conjuntos de datos, se recomienda visitar la web del proyecto en el siguiente enlace: https://github.com/zumaiaUOC/tipologia-PRA1-subastas-diputacion
DOI: 10.15468/95jsjq
title: A new species of Flavalona Sinev & Dumont, 2016 (Crustacea: Branchiopoda) from Bale Mountains, Ethiopia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Neretina, Anna N., Sinev, Artem Y. (2021): A new species of Flavalona Sinev & Dumont, 2016 (Crustacea: Branchiopoda) from Bale Mountains, Ethiopia. Zootaxa 4948 (1): 113-122, DOI: https://doi.org/10.11646/zootaxa.4948.1.6
DOI: 10.5281/zenodo.4662765
title: hybrid_a_ST

description: dorothea_A inter bicor^ST interactome
DOI: 10.5281/zenodo.4662764
title: hybrid_a_ST

description: dorothea_A inter bicor^ST interactome
DOI: 10.6084/m9.figshare.14371613
title: R tutorial: How to create a resistance surface, compute effective distances, and create connectivity maps?

description: R tutorial associated to the paper: An overview of computational tools for preparing, constructing and using resistance surfaces in connectivity research.Unzip the archive, and follow the instruction in the file "script_how_to_create_resistance_surfaces.r"
DOI: 10.5281/zenodo.4659639
title: Femtosecond electron diffraction and theoretical study of dynamics data of pentacene single crystals

description: <strong>Experimental data of pentacene single crystals:</strong> Femtosecond electron diffraction data of pentacene single crystals measured at the Fritz Haber Institute in Berlin.The dataset contains an experiment for a long time range (measurement_1) and another experiment for a short time range (measurement_2). <strong>Theory data of pentacene single crystals:</strong> DFT - relaxation data obtained with Octopus and FHI-AIMS codes. Initial settings and resulting structures are included. This folder also contains results of phonons calculations performed with FHI-AIMS and Phonopy. md - this folder contains MD settings as well as obtained trajectories of equilibrium and out of equilibrium calculations. In each case, results of six parallel runs are included. diffraction - the folder contains diffraction data obtained from each of the six parallel runs, where the molecular dynamics trajectories were sampled every 250 fs. Data are divided for “equilibrium” and “out_of_equilibrium” sub folders. The diffraction data is stored in "out.npz" files that requires Python and NumPy to access. TDDFT - contains TDDFT results obtained with Octopus code. The “td.general” contains laser pulse data and atomic trajectories during the simulation.<br>
description: Acknowledgments: this work was funded by the Max Planck Society, the European Research Council (ERC) under the European Unions Horizon 2020 research and innovation program (Grant Agreement Number ERC-2015-CoG-682843), and by the Deutsche Forschungsgemeinschaft (DFG) - Projektnummer 182087777 - SFB 951 (B17 and A13). H.S. acknowledges support by the Swiss National Science Foundation under Grant No. P2SKP2184100. Y.W.W acknowledges funding from the DFG within the Emmy Noether program under Grant No. RE 3977/1. M.K. acknowledges funding from the BigMAX Max Planck research network on big-data-driven material science. S.H. and J.P. are grateful to the DFG for support within project PF385/12 as well as to the Bavarian State Ministry for Science and the Arts for funding within the collaborative research network "Solar Technologies go Hybrid" (SolTech).
DOI: 10.5281/zenodo.4659638
title: Femtosecond electron diffraction and theoretical study of dynamics data of pentacene single crystals

description: <strong>Experimental data of pentacene single crystals:</strong> Femtosecond electron diffraction data of pentacene single crystals measured at the Fritz Haber Institute in Berlin.The dataset contains an experiment for a long time range (measurement_1) and another experiment for a short time range (measurement_2). <strong>Theory data of pentacene single crystals:</strong> DFT - relaxation data obtained with Octopus and FHI-AIMS codes. Initial settings and resulting structures are included. This folder also contains results of phonons calculations performed with FHI-AIMS and Phonopy. md - this folder contains MD settings as well as obtained trajectories of equilibrium and out of equilibrium calculations. In each case, results of six parallel runs are included. diffraction - the folder contains diffraction data obtained from each of the six parallel runs, where the molecular dynamics trajectories were sampled every 250 fs. Data are divided for “equilibrium” and “out_of_equilibrium” sub folders. The diffraction data is stored in "out.npz" files that requires Python and NumPy to access. TDDFT - contains TDDFT results obtained with Octopus code. The “td.general” contains laser pulse data and atomic trajectories during the simulation.<br>
description: Acknowledgments: this work was funded by the Max Planck Society, the European Research Council (ERC) under the European Unions Horizon 2020 research and innovation program (Grant Agreement Number ERC-2015-CoG-682843), and by the Deutsche Forschungsgemeinschaft (DFG) - Projektnummer 182087777 - SFB 951 (B17 and A13). H.S. acknowledges support by the Swiss National Science Foundation under Grant No. P2SKP2184100. Y.W.W acknowledges funding from the DFG within the Emmy Noether program under Grant No. RE 3977/1. M.K. acknowledges funding from the BigMAX Max Planck research network on big-data-driven material science. S.H. and J.P. are grateful to the DFG for support within project PF385/12 as well as to the Bavarian State Ministry for Science and the Arts for funding within the collaborative research network "Solar Technologies go Hybrid" (SolTech).
DOI: 10.6084/m9.figshare.14363600
title: Data, Code, and Readme Files

description: Data and code in support of [Klarevas-Irby, Wikelski, and Farine (2021)], in addition to a readme file with further information. All scripts are written for implementation in R ver. 4.0 and are numbered in order that they are implemented (order does not matter between multiple scripts with same number).
DOI: 10.6084/m9.figshare.13029039.v1
title: Genomic epidemiology of emerging ESBL-producing <i>Salmonella</i> Kentucky <i>bla</i> <sub>CTX-M-14b</sub> in Europe

description: Global dissemination of ciprofloxacin-resistant <i>Salmonella</i> Kentucky has been observed over the past decades. In recent years, there have been reports of extended-spectrum β-lactamase (ESBL) producing <i>S</i>. Kentucky. Routine surveillance at the European Centre for Disease Prevention and Control (ECDC) detected cases with a ciprofloxacin-resistant <i>S</i>. Kentucky with the ESBL-gene <i>bla</i> <sub>CTX-M-14b</sub>. Ensuing research identified 78 cases in 2013–2018 in eight European countries. Compared to other <i>S</i>. Kentucky and non-typhoidal <i>Salmonella</i> infections, reported to the European Surveillance System, these cases were more likely to be elderly and to present urinary-tract infections. Bayesian time-scaled phylogeny on whole genome sequences of isolates from these cases and supplementary isolates from public sequence databases was used to infer the origin and spread of this clone. We dated the origin of the <i>bla</i> <sub>CTX-M-14b</sub> clone to approximately 2005 in Northern Africa, most likely in Egypt. The geographic origin predicted by the phylogenetic analysis is consistent with the patients’ travel history. Next to multiple introductions of the clone to Europe from Egypt, our analysis suggests that in some parts of Europe the clone might have formed a stable population, from which further spread has occurred. Comparative genomics indicated that the <i>bla</i> <sub>CTX-M-14b</sub> gene is present on the bacterial chromosome, within the type VI secretion system region. The <i>bla</i> <sub>CTX-M-14b</sub> gene is integrated downstream of the <i>hcp1</i> gene, on a 2854 bp plasmid fragment containing also IS<i>Ecp1</i>. This is the first report of a chromosomally integrated CTX-M gene in <i>Salmonella</i> spp. in Europe, previous studies having identified similar genes only on plasmids.
DOI: 10.5281/zenodo.4662244
title: covid-kg

description: A Knowlegde graph constructed by merging the COVID-19 KG developed by CROssBAR and the Global Network of Biomedical Relationships.
DOI: 10.5281/zenodo.4661197
title: covid-kg

description: A Knowlegde graph constructed by merging the COVID-19 KG developed by CROssBAR and the Global Network of Biomedical Relationships.
DOI: 10.5281/zenodo.4662191
title: Base de dados de desenhos manuscritos e scripts para classificação do tremor

description: Arquivos relacionados à base de dados montada com desenhos manuscritos no padrão espiral e sinusoidal a partir da coleta realizada em voluntários com a doença de Parkinson e grupo controle utilizando lápis e papel. A base contém 960 imagens no total, pré-processadas e organizadas em pastas separadas por dia de coleta e outra pasta com os dados de ambos os dias de coleta. Há, também, dois arquivos desenvolvidos na linguagem Python: um deles contém funções específicas e o outro é o script para realizar o treinamento e teste dos classificadores (RFC, KNN, SVM e 1D CNN) utilizando as características extraídas pelo HOG.
DOI: 10.5281/zenodo.4662190
title: Base de dados de desenhos manuscritos e scripts para classificação do tremor

description: Arquivos relacionados à base de dados montada com desenhos manuscritos no padrão espiral e sinusoidal a partir da coleta realizada em voluntários com a doença de Parkinson e grupo controle utilizando lápis e papel. A base contém 960 imagens no total, pré-processadas e organizadas em pastas separadas por dia de coleta e outra pasta com os dados de ambos os dias de coleta. Há, também, dois arquivos desenvolvidos na linguagem Python: um deles contém funções específicas e o outro é o script para realizar o treinamento e teste dos classificadores (RFC, KNN, SVM e 1D CNN) utilizando as características extraídas pelo HOG.
DOI: 10.5281/zenodo.4662819
title: SELENE_COU

description: Données structurées des glissements sémantiques de COU dans les langues sénégambiennes
DOI: 10.6084/m9.figshare.12993545
title: The Big Run-Commuting Survey - Raw Data

description: Anonymised raw data from The Big Run Commuting Survey
DOI: 10.6084/m9.figshare.12993539
title: The Big Run-Commuting Survey - Analysed

description: Analysed data from The Big Run Commuting Survey
DOI: 10.15468/gnua3b
title: Deux nouveaux Protoancylodiscoides Paperna, 1969 (Monogenea, Ancyrocephalidae) parasites branchiaux de Clarotes laticeps (Rüppell, 1829) (Siluriformes, Claroteidae) en Côte d’Ivoire

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bouah, Enoutchy Fabrice, N'Douba, Valentin, Pariselle, Antoine (2021): Deux nouveaux Protoancylodiscoides Paperna, 1969 (Monogenea, Ancyrocephalidae) parasites branchiaux de Clarotes laticeps (Rüppell, 1829) (Siluriformes, Claroteidae) en Côte d’Ivoire. Zoosystema 43 (9): 155-162, DOI: 10.5252/zoosystema2021v43a9
DOI: 10.21227/3b4j-qg06
title: February-7-Basu-Sukanta

description: February-7-Basu-Sukanta
DOI: 10.15468/ykjjgb
title: Studies on the Zoarcidae (Teleostei: Perciformes) of the southern hemisphere. VII. A new species of Dieidolycus Anderson, 1988 from the Bismarck Sea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Anderson, M. Eric (1994): Studies on the Zoarcidae (Teleostei: Perciformes) of the southern hemisphere. VII. A new species of Dieidolycus Anderson, 1988 from the Bismarck Sea. Records of the Australian Museum 46 (2): 121-124, DOI: 10.3853/j.0067-1975.46.1994.9, URL: https://journals.australian.museum/anderson-1994-rec-aust-mus-462-121124/
DOI: 10.5281/zenodo.3787006
title: Dissolved N2O concentration and water qualities in the oil palm plantation drainage in Malaysia

description: Dataset: dissolved N2O concentration and water qualities in the drainage ditch water
DOI: 10.5281/zenodo.3787005
title: Dissolved N2O concentration and water qualities in the oil palm plantation drainage in Malaysia

description: Dataset: dissolved N2O concentration and water qualities in the drainage ditch water
DOI: 10.15468/3s26rm
title: Pachycerianthus (Anthozoa: Ceriantharia: Cerianthidae); two newly described species from Port Jackson, Australia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Carter, Scott (1995): Pachycerianthus (Anthozoa: Ceriantharia: Cerianthidae); two newly described species from Port Jackson, Australia. Records of the Australian Museum 47 (1): 1-6, DOI: 10.3853/j.0067-1975.47.1995.3, URL: https://journals.australian.museum/carter-1995-rec-aust-mus-471-16/
DOI: 10.5281/zenodo.4625293
title: Processed data and results of the INFIMA paper

description: This Zenodo repository makes the processed data and the results of our INFIMA paper available. Our paper presents a method called INFIMA for <strong>In</strong>tegrative <strong>Fi</strong>ne-<strong>Ma</strong>pping with Model Organism Multi-Omics Data. INFIMA capitalizes on multi-omics data modalities such as chromatin accessibility and transcriptome from the eight Diversity Outbred (DO) mice founder strains to fine-map DO islet eQTL. In addition, INFIMA employs footprinting and <em>in silico</em> mutation analysis to reveal regulatory genetic variants that mediate strain-specific expression differences. The source code for reproducing the data can be found at Github. Please also check our Shiny app for data visualization!
DOI: 10.5281/zenodo.4662602
title: A small data set of NSPT configurations (see https://github.com/franzdirenzo/PRlgt2020)

description: This submission contains a small data set of NSPT configurations. At the URL https://github.com/franzdirenzo/PRlgt2020 a package implementing Numerical Stochastic Perturbation Theory (NSPT) for lattice gauge theory can be found. While new releases of the PRlgt2020 package will be made available, small configuration ensembles will be released as well. At this first stage, these are only meant to let the interested one make practice in manipulating them. In this submission 20 configurations of a 12^4 lattice up to order g^8 (pure gauge SU(3) Wilson action) are released for three different values of the time integration step (Euler integrator; results are meant to be extrapolated to continuum time): each .zip file contains 20 configurations at a given time step (0.005, 0.01, and 0.02); each file (configuration) has a size of 92M. Data are in the format of the PRlgt2020 package.
description: Both the release of the PRlgt2020 package and that of NSPT configurations ensembles are part of the research project of the ITN EuroPLEx, funded under the H2020 framework (see grant acknowledgement). The author acknowledges the use of computing resources at the HPC (High Performance Computing) facility of the University of Parma, Italy. This data set was first made available via a direct link from the github repository https://github.com/franzdirenzo/PRlgt2020.
description: {"references": ["https://github.com/franzdirenzo/PRlgt2020", "Di Renzo, F. and Scorzato, L. - Numerical stochastic perturbation theory for full QCD - JHEP 10 (2004) 073 [hep-lat/0410010]"]}
DOI: 10.5281/zenodo.4662601
title: A small data set of NSPT configurations (see https://github.com/franzdirenzo/PRlgt2020)

description: This submission contains a small data set of NSPT configurations. At the URL https://github.com/franzdirenzo/PRlgt2020 a package implementing Numerical Stochastic Perturbation Theory (NSPT) for lattice gauge theory can be found. While new releases of the PRlgt2020 package will be made available, small configuration ensembles will be released as well. At this first stage, these are only meant to let the interested one make practice in manipulating them. In this submission 20 configurations of a 12^4 lattice up to order g^8 (pure gauge SU(3) Wilson action) are released for three different values of the time integration step (Euler integrator; results are meant to be extrapolated to continuum time): each .zip file contains 20 configurations at a given time step (0.005, 0.01, and 0.02); each file (configuration) has a size of 92M. Data are in the format of the PRlgt2020 package.
description: Both the release of the PRlgt2020 package and that of NSPT configurations ensembles are part of the research project of the ITN EuroPLEx, funded under the H2020 framework (see grant acknowledgement). The author acknowledges the use of computing resources at the HPC (High Performance Computing) facility of the University of Parma, Italy. This data set was first made available via a direct link from the github repository https://github.com/franzdirenzo/PRlgt2020.
description: {"references": ["https://github.com/franzdirenzo/PRlgt2020", "Di Renzo, F. and Scorzato, L. - Numerical stochastic perturbation theory for full QCD - JHEP 10 (2004) 073 [hep-lat/0410010]"]}
DOI: 10.5281/zenodo.3752886
title: Software and data for the experiments in "Sequential Linked Data: the state of affairs"

description: CSV with experiments results. Software and data for reproducibility can be found at https://github.com/enridaga/list-benchmark/releases/tag/v20210405 The article is (going to be) published on the Semantic Web Journal http://www.semantic-web-journal.net/
DOI: 10.5281/zenodo.4596492
title: Vocational Education and Training for Migrant Young People in Spain

description: This contribution intends to discuss the profile of young people of migrant origin attending vocational training in second chance schools. Data have been taken from a larger study on the population attending second chance schools and the services they provide; and the data portrayed here come mainly from a questionnaire applied in Autumn 2020 to young people enrolled in accredited second chance schools in Spain. Our findings indicate some features which these youngsters share while also showing differences among those whose native language is Spanish and those with a different one. Data also show the particularly hard living conditions many of them have and hence the harder obstacles they have to overcome in order to accredit their training and entering the labour market. These data will be discussed in relation to those obtained with migrant and refugee youngsters attending training programs in other European countries.
DOI: 10.5281/zenodo.4596491
title: Vocational Education and Training for Migrant Young People in Spain

description: This contribution intends to discuss the profile of young people of migrant origin attending vocational training in second chance schools. Data have been taken from a larger study on the population attending second chance schools and the services they provide; and the data portrayed here come mainly from a questionnaire applied in Autumn 2020 to young people enrolled in accredited second chance schools in Spain. Our findings indicate some features which these youngsters share while also showing differences among those whose native language is Spanish and those with a different one. Data also show the particularly hard living conditions many of them have and hence the harder obstacles they have to overcome in order to accredit their training and entering the labour market. These data will be discussed in relation to those obtained with migrant and refugee youngsters attending training programs in other European countries.
DOI: 10.5281/zenodo.4662904
title: Supplementary material- Nutrients-MDPI

description: Table S1: Mouse primer sequences used for quantitative real-time polymerase chain reaction (RT-PCR).
description: Bioprocess Technology Division, School of Industrial Technology, Universiti Sains Malaysia, 11800, Gelugor, Penang
DOI: 10.5281/zenodo.4662903
title: Supplementary material- Nutrients-MDPI

description: Table S1: Mouse primer sequences used for quantitative real-time polymerase chain reaction (RT-PCR).
description: Bioprocess Technology Division, School of Industrial Technology, Universiti Sains Malaysia, 11800, Gelugor, Penang
DOI: 10.21227/kaep-am84
title: February-07-Tang-Wenyuan.csv

description: February-07-Tang-Wenyuan.csv