cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/s7s61-8wc89
title: Campylobacter jejuni

description: Session notes: Medium magnification tomograms of whole WT Campylobacter cells. Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2010-08-27</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-59.0°, 63.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-08-27-7/rawdata/</p>10aug27a_WT_Campy_002.st,  Tilt Series (Pixel Size 0.95 nm), 696.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-08-27-7/rawdata/10aug27a_WT_Campy_002.st"
        > <i class="download icon"></i> Download </a></p>

        10aug27a_WT_Campy_002.rec,  Reconstruction (Pixel Size 0.962 nm), 419.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-08-27-7/3dimage_22501/10aug27a_WT_Campy_002.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/7mvky-nvc64
title: Campylobacter jejuni

description: Session notes: Campy flhAc Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-12-27</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-12-27-4/rawdata/</p>11dec27a_flhAc_0006.st,  Tilt Series (Pixel Size 0.774 nm), 726.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-12-27-4/rawdata/11dec27a_flhAc_0006.st"
        > <i class="download icon"></i> Download </a></p>

        11dec27a_flhAc_0006.rec,  Reconstruction (Pixel Size 0.78 nm), 66.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-12-27-4/3dimage_22229/11dec27a_flhAc_0006.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.wdyecu
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Artemisia abrotanum",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 77 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037870-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6q8ya
title: Occurrence Download

description: A dataset containing 107025 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Alopecurus myosuroides"
 ]
}

 The dataset includes 107025 records from 1192 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037751-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.o00133.00065
title: Charting-Chinese-brain-health-and-neurological-disorders-across-lifespan
title: Charting-Chinese-brain-health-and-neurological-disorders-across-lifespan

description: This repository contains the main code and resources for constructing and applying Chinese population-specific normative references for brain structure across the lifespan, along with clinical applications for neurological disorders. The framework includes:Normative modeling using GAMLSS and HBR for multiple brain parcellation atlases (Desikan–Killiany, HCP-MMP1.0, DU15NET, Brainnetome).Disease Propensity Score (DPS) models for neurological disorder classification.Scripts for normative model fitting, validation, and application to:Population/disease cohorts (Disease-application-normative-model.R)Individual cases (Individual-application-normative-model.R)Site calibration (Calibration-normative-model-using-new-dataset.R)Clinical tasks (DPS estimation, prognosis prediction, brain health reports).Key Features:Precomputed normative models.Example datasets for testing (not for clinical use).MIT-licensed; datasets available upon request (liuyaou@bjtth.org).Use Case: Enables researchers to benchmark brain structural metrics against a healthy Chinese lifespan reference, quantify deviations in disease/individual data, and generate personalized reports.
description: This repository contains the main code and resources for constructing and applying Chinese population-specific normative references for brain structure across the lifespan, along with clinical applications for neurological disorders. The framework includes:Normative modeling using GAMLSS and HBR for multiple brain parcellation atlases (Desikan–Killiany, HCP-MMP1.0, DU15NET, Brainnetome).Disease Propensity Score (DPS) models for neurological disorder classification.Scripts for normative model fitting, validation, and application to:Population/disease cohorts (Disease-application-normative-model.R)Individual cases (Individual-application-normative-model.R)Site calibration (Calibration-normative-model-using-new-dataset.R)Clinical tasks (DPS estimation, prognosis prediction, brain health reports).Key Features:Precomputed normative models.Example datasets for testing (not for clinical use).MIT-licensed; datasets available upon request (liuyaou@bjtth.org).Use Case: Enables researchers to benchmark brain structural metrics against a healthy Chinese lifespan reference, quantify deviations in disease/individual data, and generate personalized reports.
DOI: 10.15468/dl.suqttq
title: Occurrence Download

description: A dataset listing the 183965 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetName is one of (Artportalen, Norwegian Species Observation Service, Waarnemingen.be - Hemiptera occurrences in Flanders and the Brussels Capital Region, Belgium, Waarnemingen.be - Butterfly occurrences in Flanders and the Brussels Capital Region, Belgium, Waarnemingen.be - Other insect occurrences in Flanders and the Brussels Capital Region, Belgium, Waarnemingen.be - Non-native animal occurrences in Flanders and the Brussels Capital Region, Belgium, Waarnemingen.be - Hymenoptera occurrences in Flanders and the Brussels Capital Region, Belgium, BV Insectarium Virtual, Bugbase, Lepidopterological Society, Danish Mycological Society, fungal records database, Finnish Insect Database, iNaturalist Research-grade Observations, Invazivke - Invasive Alien Species in Slovenia, NABU|naturgucker, Observation.org, Nature data from around the World, Swiss National Butterflies and Forester Moths Databank, Swiss National Fungi Databank, UK Butterfly Monitoring Scheme (UKBMS), VieKas LIFE project invasive species observations)",
 "OccurrenceStatus is Present",
 "TaxonKey is Insecta"
 ]
}

 The dataset's 183965 records were derived from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029051-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jawjpp
title: Occurrence Download

description: A dataset containing 527 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Month is one of (January, February)",
 "OccurrenceStatus is Present",
 "TaxonKey is Bubo bubo (Linnaeus, 1758)",
 "Year 2011-2011"
 ]
}

 The dataset includes 527 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006170-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mdc378
title: Occurrence Download

description: A dataset containing 1127223 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-04-23",
 "EventDate is less than or equal to 2025-05-23",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 1127223 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006159-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kxfy78
title: Occurrence Download

description: A dataset containing 5547794 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-122.51313 36.89694,-121.8528 36.89694,-121.8528 37.3508,-122.51313 37.3508,-122.51313 36.89694))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 5547794 records from 591 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006151-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5bv6kn
title: Occurrence Download

description: A dataset containing 59183 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Manihot Mill."
 ]
}

 The dataset includes 59183 records from 556 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006162-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28616654
title: Raw data and scripts from Berghäuser et al. 2025 "Morphology and development of the baculum in harbour seals (<i>Phoca vitulina</i>)"

description: The file "Berghäuser et al. 2025 Meshlab scripts" contains Meshlab scripts for cleaning PLY surface meshes.The file "Berghäuser et al. 2025 Phoca R project" contains final PLY surface meshes of genital bones, landmark data, raw data of all analyzed individuals (body mass, body length, age), and the R project files to reproduce all statistical analyses.
DOI: 10.5281/zenodo.17543687
title: Meteorological time series in Brazil - conventional stations

description: Daily meteorological time series from conventional climate stations in Brazil.

This dataset is a mirror of official and public data released by Brazil's meteorological public services (INMET). The dataset here is streamlined for processing and managing large volumes of data.

Files

DATABASE.gpkg -- spatial database with the following layers:



stations -- points of climate stations with attributes;

fields -- table of field names and metadata;

data -- time series of meteorological varibales.




Note: data values are scaled by a factor of 10 to improve storage efficiency. See fields layer.


query.py -- standalone python script for data retrieval. See docstring for instructions.

 

Info

Number of stations in catalog: 135

Start of sampling: 1961-01-01 00:00:00

End of sampling: 2025-01-01 00:00:00

Meteorological variables:



ppt -- Total daily precipitation (mm);

evp -- Daily Piché evaporation  (mm);

sun -- Total sunshine daily (h);

tas_max -- Maximum daily temperature  (°C);

tas_mean -- Compensated daily average temperature (°C);

tas_min -- Minimum daily temperature (°C);

hur_mean -- Relative air humidity daily average (%);

hur_min -- Relative air humidity daily minimum (%);

wind_mean -- Wind daily average speed (m/s);


 

Query data

SQL tool

Data can be retrieved in QGIS via SQL tool with this query:



SELECT d.*,s.cd_stationFROM data AS dLEFT JOIN stations AS sON d.id_station = s.id_station-- define station codeWHERE s.cd_station = 'A001'-- define datetime rangeAND d.datetime BETWEEN '2024-01-01' AND '2024-12-31'ORDER BY d.datetime;


This query can be imported as a table to QGIS and then exported as a CSV file.

Warning: data values are scaled. Check the fields layer for scale constants.

Python script

Using the terminal, go to folder with DATABASE.gpkg and query.py



>>> cd path/to/folder


Then call the query passing the arguments:



>>> python -m query -o "path/to/output" -s "83377" --start "2020-01-01" --end "2022-01-01"


Where -s is the station code string.

 

This will yield a CSV file for the query in the output folder. 

Note: This method already converts the values to the actual numerical range.

Warning: Pandas and Geopandas are required dependencies.

Source

Data was sourced from:

INMET (2025). Meteorological Database for Education and Research (BDMEP) from National Institute of Meteorology (Instituto Nacional de Meteorologia - INMET). Available at: https://bdmep.inmet.gov.br/ Latest access: February of 2025.

 

Logs

0.0.1 -- Data updated to 2025-01-01.
DOI: 10.15468/dl.fgn25g
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kenya",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Areca catechu L."
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008427-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/j3z-3mn-f86
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tpg-3t2-van
title: †Gryphaea Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29944622
title: Table S5

description: Supplementary Table S8
DOI: 10.3535/9cv-0zt-lv6
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lc5-8t5-j0f
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eas-ed5-y96
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z2d-p9p-0by
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/10w-8yd-r7z
title: Bythocypris Brady, 1880

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p67-xas-1v8
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cq0-alf-10q
title: Pachydiscus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f0x-2bf-gfb
title: †Fusulinidae Möller, 1878

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/n8wt8u
title: TNE | Monitoramento de mastofauna da linha de transmissão 500 kV Manaus–Boa Vista e subestações associadas - Campanha 1

description: A TNE – Transnorte Energia S.A. é uma concessionária de serviço público de transmissão de energia elétrica e tem como acionistas a Alupar Investimento S.A. e a Eletrobrás Eletronorte. A empresa sagrou-se vencedora no leilão 004/2011 realizado pela ANEEl. O Contrato de Concessão nº 003/2012 outorgou à TNE a concessão de serviço público de transmissão de energia elétrica pelo prazo de 30 anos. Com o objetivo social a TNE é responsável pela implantação, operação e manutenção da Linha de Transmissão 500 kV (Manaus – Boa Vista), que conectará Roraima ao Sistema Interligado Nacional (SIN).
DOI: 10.3535/5df-jm8-nv3
title: †Aulacothyris Douvillé, 1879

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e14-f82-ts3
title: Homo sapiens Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h39-2fw-9kt
title: †Discocyclina Gümbel, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/45y-37x-10g
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7ek-d6d-es2
title: †Discocyclina discus (Rütimeyer, 1850)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/agb-ld3-ehg
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/djx-b29-2zs
title: †Orbitolites complanata Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/99j-0wd-lyd
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e2x-vrd-yk5
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jf3-zw5-aqz
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jtj-3q8-tzp
title: Favulina hexagona (Williamson, 1848)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n1k-evv-9vy
title: Cetacea Brisson, 1762

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vdt-bej-m92
title: Neogastropoda Wenz, 1938

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zrr-e1h-8t2
title: Discoporella d'Orbigny, 1852

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/myk-fhb-xt2
title: †Cellaria crassa Wood, 1844

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/271-acz-nk3
title: †Lepidocyclina Gümbel, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8rc-mzb-m29
title: Calcarina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6073/pasta/dc363389ee514e7384bf348228ee5ced
title: FAB 1: Forests and Biodiversity Experiment - High density diversity experiment: carbon budget data

description: This data represents changes in above and belowground C pools in young stands six years after the initiation of the Forests and Biodiversity experiment (FAB1) in 2013, consisting of high density plots of one, two, five, or 12 tree species planted in a common garden. Trees were planted to represent a range of native functional diversity, including needle-leaf conifer and broadleaf deciduous species as well as ectomycorrhizal and arbuscular mycorrhizal species. We quantified the effects of species richness, phylogenetic diversity, and functional diversity on aboveground C accumulation, as well as on soil C accumulation, fine root C, and soil aggregation. To assess the role of the microbial community in mediating these effects, we further compared changes in soil C pools to phospholipid fatty acids (PLFAs) profiles collected in 2016.
DOI: 10.3535/8bm-4km-e7h
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1fj-qs6-3yy
title: †Gryphaea Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t4r-v7t-ctb
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0xg-692-ny8
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1gp-58x-g9f
title: Sagittaria Ruppius ex L.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xt0-2jr-8p8
title: Textularia Defrance, 1824

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n9h-d1a-s0x
title: †Lepidorbitoides minima Douvillé, 1927

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zfv-e4q-bb8
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tag-mlr-07n
title: †Lepidorbitoides Silvestri, 1907

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vbd-309-ck1
title: †Lepidocyclina Gümbel, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jjx-m3a-kvh
title: †Lepidocyclina Gümbel, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.gddp9d
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chinese Taipei",
 "OccurrenceStatus is Present",
 "TaxonKey is Allium przewalskianum Regel"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011514-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/11886224
title: Lung Cancer Medical Imaging Colorized Dataset