cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13020/d6n10n
title: Supplemental Materials to Bayesian Methods for Data Analysis, 3rd Edition

description: These files are the supplemental materials referred to in the 3rd edition of Bayesian Methods for Data Analysis. This record is complete with datasets, R code, and WinBUGS. There is a csv file that provides a map for page number and associated file. If there is no page number, then there is a section number or short description.
DOI: 10.5517/ccdc.csd.cc294tjt
title: CCDC 2119796: Experimental Crystal Structure Determination

description: Related Article: Fangjun Ye|2021|CSD Communication|||
description: Related Article: Fangjun Ye, Chengzhen Shen, Jianxin Guan, Yiming Liu, Xiaoge Wang, Jingtian Wang, Ming Cong, Weibin Wang, Ting Zhang, Bo Zou, Junrong Zheng, Yuguo Ma|2022|J.Mater.Chem.C|10|3560|doi:10.1039/D1TC05810J
DOI: 10.5517/ccdc.csd.cc294tkv
title: CCDC 2119797: Experimental Crystal Structure Determination

description: Related Article: Fangjun Ye|2021|CSD Communication|||
description: Related Article: Fangjun Ye, Chengzhen Shen, Jianxin Guan, Yiming Liu, Xiaoge Wang, Jingtian Wang, Ming Cong, Weibin Wang, Ting Zhang, Bo Zou, Junrong Zheng, Yuguo Ma|2022|J.Mater.Chem.C|10|3560|doi:10.1039/D1TC05810J
DOI: 10.25345/c59z90f9j
title: MassIVE MSV000089021 - Mouse_plasma_inflammation_young_old_smORF
title: Identification of Proteins and smORF-encoded microproteins in plasma from DIO/lean old/young mice
DOI: 10.13020/df2m-a470
title: Supplementary data for "The PMC Turbo balloon mission to measure gravity waves and turbulence in Polar Mesospheric Clouds: Camera, telemetry, and software performance"

description: The Polar Mesospheric Cloud Turbulence (PMC Turbo) instrument consists of a balloon-borne platform which hosts seven cameras and a Rayleigh lidar. During a six-day flight in July 2018, the cameras captured images of Polar Mesospheric Clouds (PMCs) with a sensitivity to spatial scales from ~20 m to 100 km at a ~2-s cadence and a full field of view (FOV) of hundreds of kilometers. We developed software optimized for imaging of PMCs, controlling multiple independent cameras, compressing and storing images, and for choosing telemetry communication channels. We give an overview of the PMC Turbo design focusing on the flight software and telemetry functions. We describe the performance of the system during its first flight in July 2018. The images uploaded here support the paper in demonstrating the performance of the PMC Turbo instrument.
description: There are three separate files containing images from PMC Turbo cameras during its flight in July 2018. Image data were taken aboard the PMC Turbo instrument described in Fritts et al. (2019) "PMC Turbo: Studying Gravity Wave and Instability Dynamics in the Summer Mesosphere Using Polar Mesospheric Cloud Imaging and Profiling From a Stratospheric Balloon," https://doi.org/10.1029/2019JD030298.
DOI: 10.13020/ram6-m093
title: Comprehensive screening of quaternary ammonium surfactants and ionic liquids in wastewater effluents and lake sediments

description: Quaternary ammonium compounds (QACs) are widely used as surfactants and biocides and also comprise the cations in ionic liquids. QACs have the potential to reach the environment via household, agricultural, and industrial use, and it is important to understand the distribution and sources of these compounds in aquatic systems. In this study, QACs were found in both wastewater effluents and sediments, with compounds containing twelve or more carbons in the side-chain being more prevalent in both matrices. Data from wastewater treatment plants with different unit operations and from sediment cores point to wastewater treatment practices and usage rates being important factors in dictating the environmental prevalence of QACs.
description: Deposited here are Excel files containing data regarding the concentration of quaternary ammonium compounds in wastewater effluent samples and in lake-sediment cores retrieved from select lakes in Minnesota as well as accumulation rates of quaternary ammonium compounds in the lake-sediment cores.
DOI: 10.13020/efc6-7m20
title: Raw Data and Code for Optical Approaches for Passive Thermal Management in c-Si Photovoltaic Modules

description: These data comprise the raw experimental and simulation results of, and the computer code written to support, the work described in the manuscript "Optical Approaches for Passive Thermal Management in c-Si Photovoltaic Modules" submitted by the listed authors to the publication Joule, and are here submitted in accordance with the data archiving policy of the journal. These data contain primarily results from the third-party ray tracing software "SunSolve" published by PVLighthouse (www.pvlighthouse.au) and results from the finite-element simulation software "TOMCAT", published by the National Renewable Energy Laboratory (https://github.com/NREL/pv_tomcat). Additionally, the code written as a part of this work (MATLAB) has been provided.
description: Files are sorted into folders depending on the figure in the manuscript to which they pertain. Many figures use data from simulation or experimental results. The results are placed in each folder as obtained from the experimental apparatus or simulation software in .csv format. MATLAB code written to support this work is provided. Input files for ray tracing simulations (SunSolve, PVLighthouse) and finite-element simulations (TOMCAT, NREL) are provided. SunSolve is third-party software to which NREL pays a subscription and the provided files are only compatible with that software as far as the authors are aware.
DOI: 10.13020/d6pp41
title: Arctic Peregrine Falcon Abundance on Cliffs Along the Colville River, Alaska, 1981-2002 and Covariate Input Files

description: Arctic peregrine falcons (Falco peregrinus tundrius; hereafter Arctic peregrine) have a limited and northern breeding distribution, including the Colville River Special Area (CRSA) in the National Petroleum Reserve-Alaska, USA.  We quantified influences of climate, topography, nest productivity, prey habitat, density dependence, and interspecific competition affecting Arctic peregrines in the CRSA by applying the Dail-Madsen model to estimate abundance and vital rates of adults on nesting cliffs from 1981 through 2002.  Arctic peregrine abundance increased throughout the 1980s, which spanned the population's recovery from DDT-induced reproductive failure, until exhibiting a stationary trend in the 1990s.  Apparent survival rate (i.e., emigration; death) was negatively correlated with number of adult Arctic peregrines on the cliff the previous year, suggesting effects of density-dependent population regulation.  Apparent survival rate and arrival rate (i.e., immigration; recruitment) were higher during years with earlier snowmelt and milder winters, and apparent survival was positively correlated with nesting season maximum daily temperature.  Arrival rate was positively correlated with average Arctic peregrine productivity along a cliff segment from the previous year and initial abundance was positively correlated with cliff height.  Higher cliffs with documented higher productivity, and presumably indicative of higher quality habitat, are a priority for continued protection from potential nearby development and disturbance to minimize population-level impacts.  Our work provides insight into factors affecting a population during and after recovery, and demonstrates how the Dail-Madsen model can be used for any unmarked population with multiple years of abundance data collected through repeated surveys.
description: This data set consists of fourteen data files. Rcode_arctic_peregrine_abundance.R contains R code that was used to analyze Arctic peregrine falcon data collected between 1981 and 2002. The code primarily uses the R package "UNMARKED" and is based on the Dail-Madsen model for estimating population abundance. To run this code in an R environment, download the file and open it in an R interpreter (such as RStudio). The remaining files are all covariate matrices that act as inputs to the R code. To use these, download and unzip the ZIP file and place them into R's working directory. For more information about the different covariate files or further directions on running the code, see the README file.
DOI: 10.13020/d68w98
title: Iron Sulfide Formation on the Root Surfaces of Wild Rice

description: The data are from an experiment showing life-cycle induced iron sulfide formation on root surfaces of wild rice.  Plants with and without added sulfate were harvested during the reproductive stage of the life cycle to quantify concentrations of iron and sulfide on root surfaces.  Seed and plant N was measured to examine the effect of iron sulfide root plaques on seed production.  On amended roots, iron transitioned from mostly Fe(III) to mostly Fe(II) as sulfide concentrations increased rapidly.  Amended plants produced fewer, lighter seeds with less nitrogen.
description: Documentation is provided in the text file.
DOI: 10.13020/d6z39j
title: Topography and flow model files for the Platte River, Nebraska, 2016-2017

description: Automated techniques for extracting channels from topography are well developed for convergent channel networks, and identify flow paths based on land-surface gradients. These techniques—even when they allow multiple flow paths—do not consistently capture channel networks with frequent bifurcations (e.g., in rivers, deltas, and alluvial fans). The project uses multithread rivers as a template to develop a new approach for channel extraction suitable for channel networks with divergences. This data set includes topography and flow model data used to demonstrate this new approach for automated identification of channels on planetary surfaces. The data set accompanies a 2017 publication in the Journal of Geophysical Research: Earth Surface.
description: The data set includes raw and processed data for a digital elevation model; files for executing an open-source flow model; and maps of flow depth produced by this model.
DOI: 10.13020/d63g6f
title: Access Across America: Transit 2015 Data

description: These data were created as part of a study that examined the accessibility to jobs by transit in 49 of the 50 largest (by population) metropolitan areas in the United States. It is the most detailed evaluation to date of access to jobs by transit, and it allows for a direct comparison of the transit accessibility performance of America's largest metropolitan areas. These data are part of a longitudinal study; Access Across America: Transit 2014 data are available at http://hdl.handle.net/11299/168064.
description: Downloads are available for individual metropolitan regions, as well as states, in CSV or Shapefile format. Combined ZIP files containing the data for all metropolitan regions are also available in CSV and Shapefile format, and are labeled as "All Metropolitan Regions." A combined ZIP file containing the data for all State regions is available only in CSV format.
DOI: 10.13020/f3xa-5h34
title: Digitization of Minnesota and Wisconsin bathymetric maps resulting in hypsographic data

description: The data set includes hypsographic data (area-at-depth) for over 750 Minnesota and Wisconsin lakes throughout the states. The majority of these lakes (650+) did not have publicly available hypsography. The hypsography was derived by digitizing bathymetric DNR maps using ImageJ. One hundred Minnesota lakes were selected that had DNR hypsographic data (in the form of a DEM) available and a comparison between the hypsographic data derived from DEMs and ImageJ was completed. These results, as well as code and hypsographic data is all available. The purpose of this work was to release broad scale lake area-at-depth data for limnological and aquatic biology studies.
description: Minnesota_Hypsography is a folder containing csv files of hypsographic data from Minnesota lakes. Validation_Hypsography is a folder containing csv files of hypsographic data used for validation. Wisconsin_Hypsography is a folder containing csv files of hypsographic data from Wisconsin lakes. MN_bathy.rds is an R file with interpolated depth for a subset of lakes in Minnesota. Hypso_QC.r is an R file used for quality control purposes with hypsographic data that has been digitzed. Validation_report is an R file that has the comparisons between DNR derived hypsography and ImageJ derived hypsography.
DOI: 10.13020/sf5h-xh91
title:  Resistance versus temperature of an Indium Oxide thin film sample "b15c12" at various applied perpendicular magnetic field values 

description: Sheet resistance of a thin superconducting amorphous indium oxide film as a function of temperature and perpendicular magnetic field. Increasing field leads to the apparent destruction of the superconducting state and a transition to a metallic high field state.
description: DC sheet resistance of a thin amorphous indium oxide film, measured as a function of temperature at a range of magnetic fields to show a transition from a superconducting state to an metallic state. Each file gives sheet resistance as a function of temperature at a unique value of magnetic field applied perpendicular to the film.
DOI: 10.13020/6grw-ny29
title: Particle image velocimetry measurements of smooth- and rough-wall turbulence from the SAFL Atmospheric Boundary Layer wind tunnel

description: Wall-bounded turbulent flows under smooth- and rough-wall surface conditions were measured using particle image velocimetry (PIV) in the Atmospheric Boundary Layer Wind Tunnel at St. Anthony Falls Laboratory (SAFL), University of Minnesota. In the rough-wall case, the tunnel surface was covered with woven wire mesh. The smooth- and rough-wall conditions were each measured for two free-stream velocities (7 m/s and 10 m/s), totaling four flow cases. The friction Reynolds number in the four cases ranges from 3,800 to 14,000. In each case, the PIV imaging field was oriented in the streamwise–wall-normal plane. To enhance the spatial resolution, the measurement field was positioned in the lowest 10 cm of the boundary layer, capturing the roughness sublayer and logarithmic region in the rough-wall cases. Separate high-frequency hotwire anemometer measurements of the full boundary layer profile were used to estimate the scaling parameters such as the boundary layer thickness. This dataset includes the processed velocity vector fields from the PIV measurements and the key scaling parameters.
description: Data files: The data are provided in the MATLAB data file format (.mat), with a separate set of files for each flow case. The files are named based on the surface (i.e. smooth or mesh) and free-stream velocity (i.e. 7 m/s or 10 m/s) for the given case. The smooth-wall velocity vector files each contain vectors for 10,000 PIV frames. The rough-wall velocity vector data are separated into two files – each with 5,000 PIV frames – based on the position of the laser within the roughness pattern. See the File_Description document for the laser positioning, definitions for each variable in the data files, and an overview of the flow parameters.

Woven wire mesh: The mesh had 3 mm diameter and 25 mm opening size, i.e. distance between wires. The mesh height above the wind tunnel floor varied from 3 mm to 6 mm based on the overlapping, woven wires. The wire mesh covered the test section and the 16 m between the wind tunnel contraction and test section. See the File_Description document for a photo of the woven wire mesh.

PIV system: The PIV equipment included a Big Sky 532 nm Nd:YAG double-pulsed laser, a TSI Powerview 4 MP camera, and TSI Insight 4G synchronizer and acquisition software. The raw images were processed using in-house cross-correlation code with two passes and 50% vector overlap. The measurements are not time-resolved.
DOI: 10.13020/7522-qp82
title: Morphometric Measurements of Field and Laboratory-Reared Spotted-Wing Drosophila (2017-2018)

description: Winter and summer morph Drosophila suzukii can be difficult to distinguished based on a color scale. The purpose of this data were to find an alternative, quantitative method for identifying the two morphs using wing and/or hind tibia measurements.
description: The data set contains wing length, wing width, and hind tibia length of laboratory-reared known summer and winter morphs of Drosophila suzukii. Summer morphs were reared on artificial diet at 16:8 (light:dark) and at 25°C. Winter morphs were reared on artificial diet at 12:12 (light:dark) and at 10°C. In addition, we recorded morphometric measurements on field-caught D. suzukii through-out the greater Twin Cities region in Minnesota.
DOI: 10.13020/adqb-bb41
title: Environmental association identifies candidates for tolerance to low temperature and drought

description: Barley is cultivated from the equator to the Arctic Circle. The wild progenitor species, Hordeum vulgare ssp. spontaneum, occupies a relatively narrow latitudinal range (~30 - 40˚ N) primarily at low elevation, < 1500 m. Adaptation to the range of cultivation has occurred over ~8,000 years. The genetic basis of this adaptation is amenable to study through environmental association. Using genotyping from 7,864 SNPs in 784 barley landraces, we perform mixed model association analysis relative to bioclimatic variables and analysis of allele frequency differentiation across multiple partitions of the data. Using resequencing data from a subset of the landraces, we test for linkage disequilibrium (LD) between SNPs queried in genotyping and SNPs in neighboring loci. We identify seven loci previously reported to contribute to adaptive differences to flowering time and abiotic stress in barley and four loci previously identified in other plant species. In many cases, patterns of LD are consistent with the causative variant occurring in the immediate vicinity of the queried SNP. The identification of barley orthologs to well characterized genes may provide new understanding of the nature of adaptive variation and could permit a more targeted use of potentially adaptive variants in barley breeding and germplasm improvement.
DOI: 10.13020/vj63-6x81
title: Supporting Data and Codes for Origins of the suppression of fibril formation in grafted methylcellulose solutions

description: The data set consists of the codes used to generate and analyze the molecular dynamics trajectories along with the trajectory restart files and the files containing the data points for the figures in the article. It is released for the faithful reproduction of the data in the article.
description: LAMMPS codes, MATLAB codes, FORTRAN codes, Python codes.
Movie files for trajectories.
LAMMPS restart files.
DOI: 10.13020/te3n-hj23
title:  PMC Turbo image and lidar data taken in July 2018, supplement to Geach et al. (2020) "Gravity Wave and Vortex Ring Formation Observed by PMC Turbo" 

description: These datasets are published in accordance with AGU requirements for journal submission.
description: Data consist of image data ("Geach_ds01.nc"), lidar data("Geach_ds02.nc"), and NAVGEM reanalysis output ("Geach_ds03.nc").

 Image and lidar data were taken aboard the PMC Turbo instrument described in Fritts et al. (2019) "PMC Turbo: Studying Gravity Wave and Instability Dynamics in the Summer Mesosphere Using Polar Mesospheric Cloud Imaging and Profiling From a Stratospheric Balloon". Images contain metadata: balloon location, altitude, and pointing, and image exposure time.

NAVGEM reanalysis model is described in Eckermann et al. (2018) "High-Altitude (0–100 km) Global Atmospheric Reanalysis System: Description and Application to the 2014 Austral Winter of the Deep Propagating Gravity Wave Experiment (DEEPWAVE)". Data consists of vertical profiles from 50-100 km of meridional winds, zonal winds, temperatures and buoyancy frequency.
DOI: 10.13020/d60d42
title: Epidemiological Model and Weighted Edgelists of Contacts Among Cattle Herds in the Dry and Wet Season in Central Keny

description: This data consists of weighted edgelists representing the frequency with which mobile herds of cattle came into contact with one another in central Kenya.  In addition, code is included that simulates the spread of a pathogen through the cattle network.  This data can be used to better understand patterns of contact among cattle herds and its implication for the spread of pathogens.
description: The edgelists can be used to simulate disease spread in the wet or dry season using the modeling code in OPC_cattle_model_DRUM.R. A dynamic edgelist (edges.dynamic.dry.csv or edges.dynamic.wet.csv) should be read into the modeling code as part of the read.csv(file.choose()) function.  The code should be run in entirety to load the function Net.model(). Then run Net.model() to produce the output. See the Readme.txt file for more details.
DOI: 10.13020/0px3-ke80
title: Social Information in Written Standard Sentence Materials: Methods and Data

description: [From the under-consideration paper, authored by Tripp & Munson]: The Harvard/IEEE (henceforth H/I) sentences are widely used for testing speech recognition in English. This study examined whether two talker characteristics, race and gender, are conveyed by 80 of the H/I sentences in their written form, and by a comparison set of sentences from the internet message board Reddit, which were expected to convey social information. As predicted, a significant proportion of raters reported perceiving race and gender information in the H/I sentences. Suggestions of how to manage the potential influence of this social information on measures of speech intelligibility are provided.

This archive includes the raw data from this paper, and the code used to generate the experiment in Qualtrics. The later of these was programmed by Abbey Hammell.
description: The reproducibility files for the Qualtrics survey (bound together in a .zip archive, TrippMunson2021_surveyProgramming.zip) have a readMe file that describes the information in each of the files (TrippMunson2021_surveyProgramming_readMe.docx)

The data-set (TrippMunson2021_raterData.csv) has a readMe file (TrippMunson2021_raterData_readMe.txt) that describes each of the columns in it. Some of the columns can only be understood by reading one of the files (2277719_Munson_PrePilot_surveydetails.docx) in the .zip archive.
DOI: 10.13020/d6kd4b
title: Seed Number Per Fruit in Long-Term Study of Population Dynamics of Clarkia xantiana ssp. xantiana at 35 Populations in the Kern River Valley, California, USA from 2006 to 2017

description: Documentation of data collected on seed number per fruit in long-term study of population dynamics of Clarkia xantiana ssp. xantiana at 35 populations in the Kern River Valley, California, USA from 2006 to 2017
description: Datafile (Data File Name: “Datafile_Seed_Number_per_Fruit.csv) contains data on the number of seeds per fruit for long-term demographic study of Clarkia xantiana xantiana from 2006 to 2017. 

At each site, in each year, the number of fruits was counted on up to 150 plants per population. From 2006 to 2012, only undamaged fruit were collected. From 2013 to 2016, up to 30 undamaged and 30 damaged fruits were collected from separate plants.
DOI: 10.13020/yz65-zc05
title:  2010 Lake Superior Mooring Deployments 

description: Since 2005, investigators at UM Duluth's Large Lakes Observatory have been deploying sub-surface moorings in Lake Superior to investigate thermal structure and currents. This submission contains all temperature and current data from deployments that occurred in 2010.
description: Temperature time series from a variety of locations and depths in Lake Superior from June 2010 to June 2011.
DOI: 10.13020/kh3j-nq14
title: Recreationist willingness to pay for aquatic invasive species management at four Minnesota lakes

description: Willingness to pay data from surveys conducted with recreationists (primarily boaters) at four Minnesota Lakes (Minnewaska, Koronis, Gull, and Pokegama) in the summer of 2019.