cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7387113
title: Software Similarity Dataset

description: This dataset contains the post-processed data for software similarity learning. More information is given: SoftwareSim_Github post_process: All embedded software with autoencoder to make sure each function is the same length (1024 bits), each final is the embedded graph representation of software. final_data: All information obtained by Somef & Inspect4py as well as cleaning. Each file represents software in the format given --&gt; Function_Name: [[Called Function], [Function Tokens]] lean_simscore.csv: This file contains software pairs as well as the similarity metrics, format is given: Property Example Graph_1 kakaobrain_helo_word Graph_2 mblondel_soft-dtw miniLM 0.4503 Sbert 0.7204 TSDAE 0.5714
DOI: 10.5281/zenodo.7488906
title: Software Similarity Dataset

description: This dataset contains the post-processed data for software similarity learning. More information is given: SoftwareSim_Github post_process: All embedded software with autoencoder to make sure each function is the same length (1024 bits), each final is the embedded graph representation of software. final_data: All information obtained by Somef & Inspect4py as well as cleaning. Each file represents software in the format given --&gt; Function_Name: [[Called Function], [Function Tokens]] lean_simscore.csv: This file contains software pairs as well as the similarity metrics, format is given: Property Example Graph_1 kakaobrain_helo_word Graph_2 mblondel_soft-dtw miniLM 0.4503 Sbert 0.7204 TSDAE 0.5714
DOI: 10.5281/zenodo.7488832
title: Spatial distribution of Mesozoic deposits and their temperature ranges within the Weser-Wiehengebirge Syncline of the inverted Lower Saxony Basin, Minden area, Germany

description: This repository contains the supplementary material for the publication "Spatial distribution of Mesozoic deposits and their temperature ranges within the Weser-Wiehengebirge Syncline of the inverted Lower Saxony Basin, Minden area, Germany" by Alexander Jüstel, Olga Knaub, Frank Strozyk, Gregor Bussmann, Florian Wellmann, Peter Kukla. <br>
DOI: 10.5281/zenodo.7488916
title: Appendix A Codes and Code Groups

description: Analysis energy data transition
DOI: 10.5281/zenodo.7488915
title: Appendix A Codes and Code Groups

description: Analysis energy data transition
DOI: 10.6084/m9.figshare.21774704
title: Evaluating effects of remote sensed neighborhood crowding indices and depth-to-water on tree height growth

description: Data set containing 4 386 trees of three different species (Picea glauca, Pinus contorta and Populus tremuloides). Based on UAV derived canopy height models and canopy surface models a set of four different neighborhood crowding indices and a depth-to-water index were calculated for each tree. Abbreviations: WS: White spruce; LP: Lodgepole pine; TA: Trembling aspen; hg_19: tree height in 2019; hg_21: tree height in 2021; mch: Mean canopy height; cc: canopy cover; ca; canopy above; canopy_angle: Canopy angle.
DOI: 10.34740/kaggle/dsv/4781820
title: 2021 World Population (updated daily)
DOI: 10.6084/m9.figshare.14398555
title: <i>Oar-miR-16b</i> and <i>oar-miR-27a</i>: negatively correlated with milk yield and milk protein in sheep

description: The characterization of miRNAs from sheep milk and their effect on milk yield and composition in sheep are remain unclear. Therefore, the aim of this study was to determine the expression pattern of several important miRNAs, which are associated with lactation in the sheep milk between high and low lactating-yield ewe groups. In addition to experimentally obtained miRNA expression results, the miRNA target genes were determined by bioinformatics analysis to identify biological pathways involved. miRNAs found to differ significantly in the expression level between the groups were <i>oar-miR-181a, oar-miR-23a, oar-miR-27a, oar-miR-16b</i> and <i>oar-miR-374</i>. Also, <i>oar-miR-27a</i> was shown negative correlation with milk protein and lactose contents while <i>oar-miR-16b</i> was shown negative correlation with milk yield in the high milk yield group. The highest connected hub genes for <i>miR-27a</i> target genes were determined as <i>MAPK14</i> and <i>PPARG</i>. Also, six genes (<i>HSPA4L, DNAJA2, ATP6V1B2, PPP2R1A, PPP2R1B</i>, and <i>PRKAR2A</i>) were detected as hub genes for <i>miR-16b</i>. In this study, the relationship between expression profiles of several important miRNAs in sheep milk and milk yield and milk composition were investigated for the first time in high and low lactating yield groups.
DOI: 10.6084/m9.figshare.14398555.v1
title: <i>Oar-miR-16b</i> and <i>oar-miR-27a</i>: negatively correlated with milk yield and milk protein in sheep

description: The characterization of miRNAs from sheep milk and their effect on milk yield and composition in sheep are remain unclear. Therefore, the aim of this study was to determine the expression pattern of several important miRNAs, which are associated with lactation in the sheep milk between high and low lactating-yield ewe groups. In addition to experimentally obtained miRNA expression results, the miRNA target genes were determined by bioinformatics analysis to identify biological pathways involved. miRNAs found to differ significantly in the expression level between the groups were <i>oar-miR-181a, oar-miR-23a, oar-miR-27a, oar-miR-16b</i> and <i>oar-miR-374</i>. Also, <i>oar-miR-27a</i> was shown negative correlation with milk protein and lactose contents while <i>oar-miR-16b</i> was shown negative correlation with milk yield in the high milk yield group. The highest connected hub genes for <i>miR-27a</i> target genes were determined as <i>MAPK14</i> and <i>PPARG</i>. Also, six genes (<i>HSPA4L, DNAJA2, ATP6V1B2, PPP2R1A, PPP2R1B</i>, and <i>PRKAR2A</i>) were detected as hub genes for <i>miR-16b</i>. In this study, the relationship between expression profiles of several important miRNAs in sheep milk and milk yield and milk composition were investigated for the first time in high and low lactating yield groups.
DOI: 10.6084/m9.figshare.21552596
title: PeleLM-FDF large eddy simulator of turbulent reacting flows

description: A new computational methodology, termed ‘PeleLM-FDF’ is developed and utilised for high fidelity large eddy simulation (LES) of complex turbulent combustion systems. This methodology is constructed via a hybrid scheme combining the Eulerian PeleLM base flow solver with the Lagrangian Monte Carlo simulator of the filtered density function (FDF) for the subgrid scale reactive scalars. The resulting methodology is capable of simulating some of the most intricate physics of complex turbulence-combustion interactions. This is demonstrated by LES of a non-premixed CO/H2 temporally evolving jet flame. The chemistry is modelled via a skeletal kinetics model, and the results are appraised via <i>a posteriori</i> comparisons against direct numerical simulation (DNS) data of the same flame. Excellent agreements are observed for the time evolution of various statistics of the thermo-chemical quantities, including the manifolds of the multi-scalar mixing. The new methodology is capable of capturing the complex phenomena of flame-extinction and re-ignition at a 1/512 of the computational cost of the DNS. The high fidelity and the computational affordability of the new PeleLM-FDF solver warrants its consideration for LES of practical turbulent combustion systems.
DOI: 10.6084/m9.figshare.19214461
title: Gaze behaviours engaged while taking over automated driving: a systematic literature review

description: Among highly automated driving research topics, transition of control, especially from automated to manual driving (i.e., takeover) have been the object of numerous studies. Drivers’ gaze behaviours are of particular interest as proper information processing by the driver is a key element to safe manual control resumption. In this study, 22 research articles were selected and reviewed to extract main gaze behaviours tendencies during takeover transitions. Despite a great variety in protocols and gaze metrics, categories of factors and gaze parameters have been established. The resulting data shows that at the onset of the takeover request gaze tend to be quickly reoriented towards the road ahead. Despite this, an increase in gaze dispersion on the road environment was found in automated driving. In addition, clear evidence for detrimental effects of visually engaging non-driving related activities on visual exploration strategies emerge (e.g., delay in reorienting the gaze towards the road ahead). Altogether, gaze data reveal the complexity of information processing during takeovers. A synthetical view of gaze parameters evolution during the takeover process has been established and associated with visual information gathering and processing. Finally, a broader view underlying the importance of combining technological approaches with human centred ones is proposed. Supplemental data for this article is available online at at http://doi:10.1080/1463922X.2022.2036861 .
DOI: 10.6084/m9.figshare.19214461.v1
title: Gaze behaviours engaged while taking over automated driving: a systematic literature review

description: Among highly automated driving research topics, transition of control, especially from automated to manual driving (i.e., takeover) have been the object of numerous studies. Drivers’ gaze behaviours are of particular interest as proper information processing by the driver is a key element to safe manual control resumption. In this study, 22 research articles were selected and reviewed to extract main gaze behaviours tendencies during takeover transitions. Despite a great variety in protocols and gaze metrics, categories of factors and gaze parameters have been established. The resulting data shows that at the onset of the takeover request gaze tend to be quickly reoriented towards the road ahead. Despite this, an increase in gaze dispersion on the road environment was found in automated driving. In addition, clear evidence for detrimental effects of visually engaging non-driving related activities on visual exploration strategies emerge (e.g., delay in reorienting the gaze towards the road ahead). Altogether, gaze data reveal the complexity of information processing during takeovers. A synthetical view of gaze parameters evolution during the takeover process has been established and associated with visual information gathering and processing. Finally, a broader view underlying the importance of combining technological approaches with human centred ones is proposed. Supplemental data for this article is available online at at http://doi:10.1080/1463922X.2022.2036861 .
DOI: 10.6084/m9.figshare.20179825
title: Renal tumor biopsy in patients with cT1b-T4-M0 disease susceptible to radical nephrectomy: analysis of safety, accuracy and clinical impact on definitive management

description: Renal tumor biopsy was provided in patients candidate to radical nephrectomy for a renal mass ≥4 cm, to evaluate treatment deviation. Between 2008 and 2017, 102 patients with a solid renal mass ≥4 cm with no distant metastases underwent preliminary renal tumor biopsy. We investigated the proportion of patients who proceeded with radical nephrectomy, variables predicting non-renal cell carcinoma (RCC) and concordance between biopsy findings and definitive pathology. Median tumor size was 70 mm (IQR 55–110). Clinical stage was cT1b in 41, cT2 in 33, cT3 in 25 and cT4 in three patients. A median of three (IQR 2–3) renal tumor biopsies were taken with 16/18 Gauge needles in 97% of cases. Clavien grade I complications occurred in five cases. Malignant tumors were documented in 84 patients: 78 RCCs and six non-RCCs. Fifteen biopsies documented oncocytoma and three were non-diagnostic. Grade was reported in 50 RCCs: 42 (84%) were low and eight (16%) high grade. Eighty-three patients proceeded with radical nephrectomy; six non-RCC malignant tumors underwent combined and/or intensified treatment; 13 of 15 patients with oncocytoma did not undergo radical nephrectomy (eight underwent observation). Definitive pathology confirmed diagnosis in all cases. Grade concordance was 84%, considering two tiers (high vs low grade). No preoperative clinical variable predicted definitive pathology. Renal tumor biopsy is a safe procedure that leads to radical nephrectomy in most tumors ≥4 cm. Nonetheless, 20% of patients exhibited non-RCC histology. Renal tumor biopsy should be considered in this setting.
DOI: 10.6084/m9.figshare.20179825.v1
title: Renal tumor biopsy in patients with cT1b-T4-M0 disease susceptible to radical nephrectomy: analysis of safety, accuracy and clinical impact on definitive management

description: Renal tumor biopsy was provided in patients candidate to radical nephrectomy for a renal mass ≥4 cm, to evaluate treatment deviation. Between 2008 and 2017, 102 patients with a solid renal mass ≥4 cm with no distant metastases underwent preliminary renal tumor biopsy. We investigated the proportion of patients who proceeded with radical nephrectomy, variables predicting non-renal cell carcinoma (RCC) and concordance between biopsy findings and definitive pathology. Median tumor size was 70 mm (IQR 55–110). Clinical stage was cT1b in 41, cT2 in 33, cT3 in 25 and cT4 in three patients. A median of three (IQR 2–3) renal tumor biopsies were taken with 16/18 Gauge needles in 97% of cases. Clavien grade I complications occurred in five cases. Malignant tumors were documented in 84 patients: 78 RCCs and six non-RCCs. Fifteen biopsies documented oncocytoma and three were non-diagnostic. Grade was reported in 50 RCCs: 42 (84%) were low and eight (16%) high grade. Eighty-three patients proceeded with radical nephrectomy; six non-RCC malignant tumors underwent combined and/or intensified treatment; 13 of 15 patients with oncocytoma did not undergo radical nephrectomy (eight underwent observation). Definitive pathology confirmed diagnosis in all cases. Grade concordance was 84%, considering two tiers (high vs low grade). No preoperative clinical variable predicted definitive pathology. Renal tumor biopsy is a safe procedure that leads to radical nephrectomy in most tumors ≥4 cm. Nonetheless, 20% of patients exhibited non-RCC histology. Renal tumor biopsy should be considered in this setting.
DOI: 10.6084/m9.figshare.20516399
title: Surgical waiting times and all-cause mortality in patients with non-metastatic renal cell carcinoma

description: To examine the association between surgical waiting times (SWTs) and all-cause mortality (ACM) in non-metastatic patients with RCC, in relation to tumour stage. This nation-wide population-based cohort study included 9,918 M0 RCC patients registered in the National Swedish Kidney Cancer Register, between 2009 and 2021, followed-up for ACM until 9 December 2021, and having measured SWTs. The associations between primarily SWTs from date of radiological diagnosis to date of surgery (WRS) and secondarily SWTs from date of radiological diagnosis to date of treatment decision (WRT) and date of treatment decision to date of surgery (WTS), in relation to ACM, were analysed using Cox regression analysis, adjusted for clinical and demographic characteristics, stratified and unstratified according to T-stage. During a mean follow-up time of 5 years (49,873 person-years), 23% (<i>n</i> = 2291) of the patients died. The adjusted hazard ratio (AHR) for WRS (months) for all patients was 1.03 (95% confidence interval [CI] = 1.02–1.04; <i>p</i> &lt; 0.001). When subdividing WRS on T-stage, the AHRs were 1.03 (95% CI = 1.01–1.04; <i>p</i> &lt; 0.001) and 1.05 (95% CI = 1.02–1.08; <i>p</i> = 0.003) for stages T1 and T3, respectively, while non-significant for T2 (<i>p</i> = 0.079) and T4 (<i>p</i> = 0.807). Similar results were obtained for WRT and WTS. Prolonged SWTs significantly increased the risk of early overall death among patients with RCC. The increased risk of early death from any cause show the importance of shortening SWTs in clinical work of patients with this malignant disease.
DOI: 10.6084/m9.figshare.20516399.v1
title: Surgical waiting times and all-cause mortality in patients with non-metastatic renal cell carcinoma

description: To examine the association between surgical waiting times (SWTs) and all-cause mortality (ACM) in non-metastatic patients with RCC, in relation to tumour stage. This nation-wide population-based cohort study included 9,918 M0 RCC patients registered in the National Swedish Kidney Cancer Register, between 2009 and 2021, followed-up for ACM until 9 December 2021, and having measured SWTs. The associations between primarily SWTs from date of radiological diagnosis to date of surgery (WRS) and secondarily SWTs from date of radiological diagnosis to date of treatment decision (WRT) and date of treatment decision to date of surgery (WTS), in relation to ACM, were analysed using Cox regression analysis, adjusted for clinical and demographic characteristics, stratified and unstratified according to T-stage. During a mean follow-up time of 5 years (49,873 person-years), 23% (<i>n</i> = 2291) of the patients died. The adjusted hazard ratio (AHR) for WRS (months) for all patients was 1.03 (95% confidence interval [CI] = 1.02–1.04; <i>p</i> &lt; 0.001). When subdividing WRS on T-stage, the AHRs were 1.03 (95% CI = 1.01–1.04; <i>p</i> &lt; 0.001) and 1.05 (95% CI = 1.02–1.08; <i>p</i> = 0.003) for stages T1 and T3, respectively, while non-significant for T2 (<i>p</i> = 0.079) and T4 (<i>p</i> = 0.807). Similar results were obtained for WRT and WTS. Prolonged SWTs significantly increased the risk of early overall death among patients with RCC. The increased risk of early death from any cause show the importance of shortening SWTs in clinical work of patients with this malignant disease.
DOI: 10.6084/m9.figshare.21017923
title: Surgeon volume and patient-reported urinary incontinence after radical prostatectomy. Population-based register study in Sweden

description: To investigate the association between surgeon volume and urinary incontinence after radical prostatectomy. A total of 8326 men in The National Prostate Cancer Register of Sweden (NPCR) underwent robot-assisted radical prostatectomy (RARP) between 2017 and 2019 of whom 56% (4668/8 326) had responded to a questionnaire one year after RARP. The questionnaire included the question: ‘How much urine leakage do you experience?’ with the response alternatives ‘Not at all’, ‘A little’, defined as continence and ‘Moderately’, ‘Much/Very much’ as incontinence. Association between incontinence and mean number of RARPs/year/surgeon was analysed with multivariable logistic regression including age, Charlson Comorbidity Index (CCI), PSA, prostate volume, number of biopsy cores with cancer, cT stage, Gleason score, lymph node dissection, nerve sparing intent and response rate to the questionnaire. 14% (659/4 668) of the men were incontinent one year after RARP. There was no statistically significant association between surgeon volume and incontinence. Older age (&gt;75 years <i>vs</i>. &lt; 65 years, OR 2.29 [95% CI 1.48–3.53]), higher CCI (CCI 2+ <i>vs.</i> CCI 0, OR 1.37 [95% CI 1.04–1.80]) and no nerve sparing intent (no <i>vs</i>. yes OR 1.53 [95% CI 1.26–1.85]) increased risk of incontinence. There were large differences in the proportion of incontinent men between surgeons with similar annual volumes, which remained after adjustment. The lack of association between surgeon volume and incontinence and the wide range in outcome between surgeons with similar volumes underline the importance of individual feedback to surgeons on functional results.
DOI: 10.6084/m9.figshare.21017923.v1
title: Surgeon volume and patient-reported urinary incontinence after radical prostatectomy. Population-based register study in Sweden

description: To investigate the association between surgeon volume and urinary incontinence after radical prostatectomy. A total of 8326 men in The National Prostate Cancer Register of Sweden (NPCR) underwent robot-assisted radical prostatectomy (RARP) between 2017 and 2019 of whom 56% (4668/8 326) had responded to a questionnaire one year after RARP. The questionnaire included the question: ‘How much urine leakage do you experience?’ with the response alternatives ‘Not at all’, ‘A little’, defined as continence and ‘Moderately’, ‘Much/Very much’ as incontinence. Association between incontinence and mean number of RARPs/year/surgeon was analysed with multivariable logistic regression including age, Charlson Comorbidity Index (CCI), PSA, prostate volume, number of biopsy cores with cancer, cT stage, Gleason score, lymph node dissection, nerve sparing intent and response rate to the questionnaire. 14% (659/4 668) of the men were incontinent one year after RARP. There was no statistically significant association between surgeon volume and incontinence. Older age (&gt;75 years <i>vs</i>. &lt; 65 years, OR 2.29 [95% CI 1.48–3.53]), higher CCI (CCI 2+ <i>vs.</i> CCI 0, OR 1.37 [95% CI 1.04–1.80]) and no nerve sparing intent (no <i>vs</i>. yes OR 1.53 [95% CI 1.26–1.85]) increased risk of incontinence. There were large differences in the proportion of incontinent men between surgeons with similar annual volumes, which remained after adjustment. The lack of association between surgeon volume and incontinence and the wide range in outcome between surgeons with similar volumes underline the importance of individual feedback to surgeons on functional results.
DOI: 10.34740/kaggle/dsv/4781897
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.5281/zenodo.7488997
title: Valsts pētījumu programmas "Kultūras kapitāls kā resurss Latvijas ilgtspējīgai attīstībai/ CARD" apakšprojekta par mantojuma kopienām jauniešu segmentā socioloģisko datu masīvs

description: Reprezentatīva socioloģiska aptauja ar mērķi: Noskaidrot aktivitātes, kurās jaunieši iesaistās regulāri un bija iesaistīti līdz skolas beigšanai. Noskaidrot iemeslus, kas kavē iesaistīties kultūras aktivitātēs. Noskaidrot kultūras patēriņu – atsevišķu pasākumu, norišu apmeklēšana. izpētes izstrādātājs: Latvijas Kultūras akadēmija aptaujas lauka darba veicējs: Pētījumu centrs SKDS mērķa grupa: jaunieši vecumā no 18 līdz 25 gadiem aptaujas metode: interneta aptauja (CAWI) respondenti: vairāku WEB paneļu dalībnieki plānotais izlases apjoms: 500 respondenti sasniegtais izlases apjoms: 506 respondenti ģeogrāfiskais pārklājums: visa Latvija aptaujas īstenošanas laiks: 04.08.2022.–25.08.2022. Datu analīze un secinājumi publicēti pētījuma ziņojumā “Jaunieši Latvijā: dalība kultūras un radošajās aktivitātēs”.
DOI: 10.5281/zenodo.7488996
title: Valsts pētījumu programmas "Kultūras kapitāls kā resurss Latvijas ilgtspējīgai attīstībai/ CARD" apakšprojekta par mantojuma kopienām jauniešu segmentā socioloģisko datu masīvs

description: Reprezentatīva socioloģiska aptauja ar mērķi: Noskaidrot aktivitātes, kurās jaunieši iesaistās regulāri un bija iesaistīti līdz skolas beigšanai. Noskaidrot iemeslus, kas kavē iesaistīties kultūras aktivitātēs. Noskaidrot kultūras patēriņu – atsevišķu pasākumu, norišu apmeklēšana. izpētes izstrādātājs: Latvijas Kultūras akadēmija aptaujas lauka darba veicējs: Pētījumu centrs SKDS mērķa grupa: jaunieši vecumā no 18 līdz 25 gadiem aptaujas metode: interneta aptauja (CAWI) respondenti: vairāku WEB paneļu dalībnieki plānotais izlases apjoms: 500 respondenti sasniegtais izlases apjoms: 506 respondenti ģeogrāfiskais pārklājums: visa Latvija aptaujas īstenošanas laiks: 04.08.2022.–25.08.2022. Datu analīze un secinājumi publicēti pētījuma ziņojumā “Jaunieši Latvijā: dalība kultūras un radošajās aktivitātēs”.
DOI: 10.5281/zenodo.7488920
title: Human Serum Albumin Adductome as an Instant Dosimeter of the Potential Internal Exposure of PM2 .5

description: This dataset contains observations and indicators for PM2.5 potential internal exposure (PIE) evaluation. The dataset including three csv files: Surface Plasmon Resonance (SPR) technology monitoring data of human serun albumin (HSA) -water soluble organic molecule( WSOM) interaction HSA-WSOM adductome abundance ADMET evaluation for major contributors