cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6176246.v1
title: Supplementary Material for: Urinary and Blood MicroRNA-126 and -770 are Potential Noninvasive Biomarker Candidates for Diabetic Nephropathy: a Meta-Analysis

description: <b><i>Background/Aims:</i></b> Diabetic nephropathy (DN), a major diabetic microvascular complication, has a long and growing list of biomarkers, including microRNA biomarkers, which have not been consistent across preclinical and clinical studies. This meta-analysis aims to identify significant blood- and urine-incident microRNAs as diagnostic/prognostic biomarker candidates for DN. <b><i>Methods:</i></b> PubMed, Web of Science, and Cochrane Library were searched from their earliest records through 12th Dec 2016. Relevant publications for the meta-analysis included (1) human participants; (2) microRNAs in blood and urine; (3) DN studies; and (4) English language. Four reviewers, including two physicians, independently and blindly extracted published data regarding microRNA profiles in blood and/or urine from subjects with diabetic nephropathy. A random-effect model was used to pool the data. Statistical associations between diabetic nephropathy and urinary or blood microRNA expression levels were assessed. <b><i>Results:</i></b> Fourteen out of 327 studies (n=2,747 patients) were selected. Blood or urinary microRNA expression data of diabetic nephropathy were pooled for this analysis. The hsa-miR-126 family was significantly (OR: 0.57; 95% CI: 0.44-0.74; p-value &lt; 0.0001) downregulated in blood from patients with diabetic kidney disease, while its urinary level was upregulated (OR: 2931.12; 95% CI: 9.96-862623.21; p-value = 0.0059). The hsa-miR-770 family microRNA were significantly (OR: 10.24; 95% CI: 2.37-44.25; p-value = 0.0018) upregulated in both blood and urine from patients with diabetic nephropathy. <b><i>Conclusions:</i></b> Our meta-analysis suggests that hsa-miR-126 and hsa-miR-770 family microRNA may have important diagnostic and pathogenetic implications for DN, which warrants further systematic clinical studies.
DOI: 10.6084/m9.figshare.7789358.v1
title: 208 ENCODE transcription factor structure models

description: Structural models were generated for 208 factors that had ChIP-Seq performed as part of the HepG2 dataset of HudsonAlpha.
DOI: 10.6084/m9.figshare.1009575.v1
title: The rational design of helium bonds

description: Web Enhanced Table. Calculated properties for molecular compounds of Helium. H. S. Rzepa "The rational design of helium bonds", Nature Chem., 2010, 2, 390-393.
DOI: 10.6084/m9.figshare.11741658.v1
title: Figure 4a.xlsx

description: AEM electrolyzer data<br>
DOI: 10.6084/m9.figshare.26391085.v1
title: Appendix C Tables C1 & C2

description: Tables for Appendix C of Hancock (2024)Table C1 - List of paleoclimate records compiled from the RAW dataset. Hydroclimate records are also included although they are not discussed in the manuscript.Table C2 - List of paleoclimate records compiled in the PAGES2k dataset and used in this study.
DOI: 10.6084/m9.figshare.7605386.v1
title: panel.CP2.tsv

description: Candidate panel 2 TSV file, in the format required by mykrobe to build the probes FASTA file.
DOI: 10.6084/m9.figshare.19560517.v2
title: New Model-Free Daily Inversion of NOx Emissions using TROPOMI (MCMFE-NOx) and its Uncertainty: Deducing a See-Saw of Halved Well Regulated Sources and Doubled New Sources

description: This dataset contains all of the data underlying the figures in the accompanying paper "New Model-Free Daily Inversion of NOx Emissions using TROPOMI (MCMFE-NOx) and its Uncertainty: Deducing a See-Saw of Halved Well Regulated Sources and Doubled New Sources". These are listed respectively under: Coefficients.zip Figure3.zip Figure4.zip Figure5.zip Figure6.zip Figure7.zip Figure8.zip Figure9.zip Figure10.zip All data is provided as .nc files, and all plots are provided as .png files. All emissions are provided as a part of Figure6.zip in .nc format, to be consistent with the paper.
DOI: 10.6084/m9.figshare.28693781.v2
title: GCBB_Strategy for sustainable bio-value chain development: Algal biomass utilization without inhibitory effects on lactic acid production via efficient diluted acid hydrolysis of brown macroalga

description: This data is the raw data of the study "Strategy for sustainable bio-value chain development: Algal biomass utilization without inhibitory effects on lactic acid production via efficient diluted acid hydrolysis of brown macroalga", which will be published in <i>GCB Bioenergy</i>.
DOI: 10.6084/m9.figshare.7867952.v1
title: Exp1

description: Repetition task<br>
DOI: 10.6084/m9.figshare.22353703.v1
title: Supplementary Material for: Impact of continuous renal replacement therapy initiation on urine output and fluid balance: A multi-centre study.

description: Introduction The effect of continuous renal replacement therapy (CRRT) on renal function is poorly understood. However, the initiation of CRRT may induce oliguria. We aimed to investigate the impact of CRRT commencement on urine output (UO). Methods Retrospective cohort study in two intensive care units. We included all patients who underwent CRRT and collected data on hourly UO and fluid balance before and after CRRT commencement. We performed an interrupted time series analysis using segmented regression to assess the relationship between CRRT commencement and UO. Results We studied 1057 patients. Median age was 60.7 years (IQR, 48.3 – 70.6) and the median APACHE III was 95 (IQR, 76 – 115). Median time to CRRT was 17 hours (IQR, 5 - 49). With start of CRRT, the absolute difference in mean hourly urine output and mean hourly fluid balance was -27.0 mL/hr (95%CI -32.1 to -21.8; p value &lt; 0.01) and – 129.3 mL/hr (95%CI -169.2 to -133.3), respectively. When controlling for pre-CRRT temporal trends and patient characteristics, there was a rapid post initiation decrease in urine output (-0.12 mL/kg/hr; 95%CI -0.17 to -0.08; p value &lt;0.01) and fluid balance (-78.1 mL/hr; 95% CI -87.9 to -68.3; p value &lt;0.01), which was sustained over the first 24 hours of CRRT. Change in urine output and fluid balance were only weakly correlated (r -0.29; 95% CI -0.35 to -0.23; p value &lt;0.01). Conclusion Commencement of CRRT was associated with a significant decrease in urine output that could not be explained by extracorporeal fluid removal.
DOI: 10.6084/m9.figshare.28717391.v1
title: Stata analysis code

description: State analysis code for GEE Model
DOI: 10.6084/m9.figshare.23281838.v1
title: Source Data for all figures.xlsx

description: Source data of all the figures in a paper titled " Enabling long-cycling aqueous sodium-ion batteries via Mn dissolution inhibition using a sodium ferrocyanide electrolyte additive"
DOI: 10.6084/m9.figshare.28152632.v1
title: SPAR-4 and sustainable operations: A meta-analytic breakthrough

description: This study aims to meticulously examine the literature on analytics, operations and sustainability through assessment of contributing publications, nations, authors, and keywords that can provide new perspectives for the research domain.
DOI: 10.6084/m9.figshare.18094270.v1
title: EEG raw dataset4

description: EEG raw dataset in brainvision format. Can be imported to EEGLAB. splitted into 7 subsets due to the limitation on upload size in figshare
DOI: 10.6084/m9.figshare.19499408.v1
title: patches and local annotations, slide 017, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.28560338.v1
title: Agricultural ditches and stream networks are overlooked hotspots of carbon emissions

description: Boxplots showing variation of CH4 flux among different types of ditches (Agriculture (ndiffusive = 41, nebullusive = 9), Forest (n = 24), Urban (n = 10), Wetland (n = 5)), streams (ndiffusive = 321, nebullusive = 27), rivers (Strahler stream order &gt; 4, ndiffusive = 157, nebullusive = 20), and lakes (ndiffusive = 631, nebullusive = 144). (c) Boxplots showing variation of CO2 flux among different types of ditches (Agriculture (n = 40), Forest (n = 26), Urban (n = 12), Wetland (n = 5)), streams (n = 311), rivers (n = 170), and lakes (n = 7250). Abbreviations: DO (dissolved oxygen), OC (organic carbon), SOC (soil organic carbon), TP (total phosphorus), TOC (total organic carbon), TN (total nitrogen), n (number of samples). Carbon emission flux data of ditches was obtained from Silverthorn, Audet [16], streams and rivers from [17], lakes from [18]. Stream and river represent rivers with Strahler stream orders 1-2 and &gt; 5 in the Global River Methane Database of concentrations and fluxes (non-targeted sites were used), respectively.
DOI: 10.6084/m9.figshare.22324057.v1
title: Supplementary_material_JDS.2022-23155

description: <strong>Supplementary material. </strong>Supplementary Table S1, Supplementary Table S2, Supplementary Table S3.
DOI: 10.6084/m9.figshare.5131963.v1
title: Penultimate Glacial Maximum Ice Margins

description: <b>Penultimate Glacial Maximum (PGM) ice-sheet extents, mapping and dating information</b>:<br><br>This is a compilation of glacio-morphological mapping and dating of the penultimate glaciation in Eurasia and North America. We only include sites where the authors specifically correlate glacial sediments or features to the PGM, where this is either identified as MIS 6 or Saalian/Illinoian glacial episodes. <br><br>We include any dating constraints (OSL, U-series, tephra or palaeomagnetic) of PGM glacial deposits. Note we make no assessment as to the reliability of the ages. Relative age control for glacial sediments has been achieved using the stratigraphic position of the glacial deposits relative to interglacial deposits (e.g., U-series dated peats), tephra (e.g., the Old Crow tephra in North America provides an upper age limit for underlying glacial deposits) and palaeomagnetic excursions.<br><br><i><b>Supplement to</b></i>:<br>Rohling*, Hibbert*, Williams* et al., 2017. Differences between the last two glacial maxima and implications for ice-sheet, δ<sup>18</sup>O, and sea-level reconstructions. <i>Quaternary Science Reviews </i><br>https://doi.org/10.1016/j.quascirev.2017.09.009<br>(* = joint first authors) <br><br><br>
DOI: 10.6084/m9.figshare.19391732.v1
title: Figure 2A Titration Concentrations

description: Vancomycin concentrations for Figure 2A dataset
DOI: 10.6084/m9.figshare.9784970.v1
title: All Subjects

description: Data from the whole sample of 50 subjects
DOI: 10.6084/m9.figshare.c.3471585_d64.v1
title: Noto Peninsula, Japan, particle number concentration, 2014-2015

description: particle number concentration, Noto Peninsula, Japan, 2014-2015
DOI: 10.6084/m9.figshare.5120824.v1
title: Supplementary Material for: Activation of Sonic Hedgehog Signaling Pathway in Olfactory Neuroblastoma

description: <i>Objectives:</i> Sonic hedgehog (Shh) signaling pathway is associated with tumor development; however, the role of Shh signaling in the development of olfactory neuroblastoma (ONB) is unknown. This study aimed to investigate the relationship between the regulation of Shh signaling and the pathogenesis of ONB. <i>Methods:</i> The expression of Shh signaling components was characterized by immunohistochemistry in human non-tumor olfactory epithelium and ONB specimens, and by RT-PCR and immunoblotting in human ONB cell lines. The impact of the treatment with cyclopamine (a selective inhibitor of the Shh pathway) and/or exogenous Shh on ONB cell proliferation, cycle and apoptosis was examined by MTT, soft agar colony formation and flow cytometry assays, respectively. The influence of Shh signaling on the expression of Shh signaling components and cell cycle-related regulators was determined by immunoblotting and quantitative RT-PCR, respectively. <i>Results:</i> The expression of Pacthed1, Gli1 and Gli2 was detected in 70, 70, and 65% of human ONB specimens, respectively, and in proportion of ONB cell lines, but not in non-tumor olfactory epithelium. Treatment with cyclopamine inhibited the proliferation and colony formation of ONB cells, induced ONB cell cycle arrest and apoptosis, and down-regulated the expression of Pacthed1, Gli1 and cyclin D1, but up-regulated p21 expression in vitro. These regulatory effects of cyclopamine were partially or completely erased by exogenous Shh. <i>Conclusion:</i> These data suggest that the Shh signaling pathway is crucial for the growth of ONB.
DOI: 10.6084/m9.figshare.12950165.v1
title: Protein final data set.xlsx

description: Single source white clover (Fabaceae: <i>Trifolium repens</i>) pollen pellets collected by <i>Apis mellifera</i> purchased from Ames Farm (Watertown, Minnesota, USA; www.amesfarm.com) and single source rose (Rosaceae: <i>Rosa </i>spp<i>.</i>) pollen collected by <i>Apis mellifera</i> purchased from the China Health Club (Chongqing, China; www.teaherbalshop.com) were used to create artificial diets to raise <i>C. calcarata</i> eggs. Pollen identity and purity were based on vendor claims. Previously dried and weighed pollen ball samples were sent for nitrogen (N) analysis at Brookside Laboratories, Inc. (New Knoxville, Ohio, USA). Using combustion and thermal conductivity detection in a Carl–Erba total nitrogen analyzer (AOAC International 1996; Gavlak <i>et al.,</i> 2003), percent crude protein was calculated by multiplying the %N of the sample by the standard conversion factor of 6.25%. The total protein in the sample was calculated as the percent crude protein times the dry mass of the sample divided by 100.
DOI: 10.6084/m9.figshare.25052813.v1
title: A37.PROKKA_09022022.sqn

description: This announcement details the genome sequence, along with the detection and characterization of antibiotic resistance genes and plasmids in a <i>Salmonella</i> isolate from a retail pork sample in Laramie, Wyoming. The comprehensive molecular analysis, following the National Antimicrobial Resistance Monitoring System (NARMS) protocol, serves as a crucial surveillance framework for monitoring antimicrobial resistance in foodborne pathogens. Additionally, the annotation of the genome was conducted to provide further insights into the genetic features of the <i>Salmonella</i> isolate.
DOI: 10.6084/m9.figshare.3842985.v1
title: Ecology Lab 2, Section 7 Grasslands data set

description: The experiment conducted on the 20th of September 2016 at York University in the grasslands was to examine if their was any relationship between vegetation percentage and the amount of sunshine present in a 1 meter by 1 meter area unit. Method: Quadrats were thrown at random 25 times in the grasslands of York University. Once thrown, the number of plant species, individuals of all the plant species, vegetation percentages and grass percentages were taken. Hypothesis: There is a correlation between vegetation percentage to the amount of sunshine present. Prediction: There is a positive correlation between sunshine and vegetation percentage. Quadrats that were randomly thrown at places with more shade had less vegetation percentage and more grass percentage while quadrats thrown at places with more sunshine had more vegetation percentage and lass grass percentage. This prediction was made due to the fact that plants need sunlight to go through photosynthesis and produce its own food to survive. Meta data: -The quadrat thrown was a 1 meter by 1 meter quadrat -The number of plant species in this quadrat were recorded -Plant ratios to grass ratios were recorded -Total number of individuals of all plant species were recorded in the 1 meter by 1 meter quadrat -Plant species included Canadian Goldenrod, Heath Ester,Butter and Eggs,Common Thistle and Late Purple Aster -There were a few small tree species but since the scientific name wasn’t known tree was just used -The data was then put on an excell sheet and uploaded on figshare.com
DOI: 10.6084/m9.figshare.7941977.v1
title: Profile and trend analysis of toxicological events in children attended by a University Hospital

description: Abstract Background Poisoning is an important public health problem with socioeconomic and health impact. Objective This study aimed to determine the profile and trend of toxicological events in children. Method Trend study conducted with children (children under 12 as defined by the Statute of Children and Adolescents) reported by the Toxicological Information Center (CIATox) of Londrina, from 2005 to 2014. The variables were collected through the CIATox-Londrina database. Trend analysis was performed using simple linear regression models. Results We identified 4,726 toxicological events in children, with a predominance of 1 to 3 years (59.2%). The majority (93.5%) was comprised of accidental cases, acute (99.8%) and with medication (34.6%) as toxicological agents. Approximately 88.1% of the patients did not require hospitalization, and the death rate was low (0.1%). There was a significant increase in the proportion of cases involving household products (R2 = 0.440; p = 0.037; β1=0.307) and chemicals (R2 = 0.456; p = 0.032; β1=0.345); and a significant reduction in accidents with rodenticides (R2 = 0.589; p = 0.010; β1=-0.246). Conclusion We observed a prevalence of children from 1 to 3 years old of age, with accidental and acute exposure, mainly involving medications. We highlight a significant increase in the proportion of cases involving household products and chemical products, and a significant reduction in cases with rodenticides.
DOI: 10.5281/zenodo.15314851
title: Landforms and soils of Baringo District, Kenya (Touber 1989)

description: Two serialized R objects (.rds format):



soil_map.rds contains a map as sf object including categorical variables as attributes.

soil_attributes.rds contains a data table/data frame with further attributes by soil type.


Soil attributes can be linked to map units using the soil_unit variable, which is present in both datasets.

This data was extracted from the publication of Touber (1989) entitled "Landforms and soils of Baringo District, Kenya. A site evaluation for rangeland use". Further documentation can be found at Codeberg.
DOI: 10.5281/zenodo.15314852
title: Landforms and soils of Baringo District, Kenya (Touber 1989)

description: Two serialized R objects (.rds format):



soil_map.rds contains a map as sf object including categorical variables as attributes.

soil_attributes.rds contains a data table/data frame with further attributes by soil type.


Soil attributes can be linked to map units using the soil_unit variable, which is present in both datasets.

This data was extracted from the publication of Touber (1989) entitled "Landforms and soils of Baringo District, Kenya. A site evaluation for rangeland use". Further documentation can be found at Codeberg.
DOI: 10.6084/m9.figshare.25796653.v4
title: Supplementary Tables from: Dysregulated Urinary Extracellular Vesicle Small RNAs in Diabetic Nephropathy: Implications for Diagnosis and Therapy.

description: The folder containing the supplementary tables for the manuscript "Dysregulated Urinary Extracellular Vesicle Small RNAs in Diabetic Nephropathy: Implications for Diagnosis and Therapy" serves as a comprehensive repository of crucial data supporting the research findings.
DOI: 10.6084/m9.figshare.27117151.v1
title: Data-Article-A Novel Hybrid Cloud Density and Fuzzy Clustering Algorithm for Analyzing Traffic Condition

description: Traffic flow analysis and management are the most effective ways to improve traffic and mitigate its unfortunate consequences. In the field of traffic engineering, traffic and its various aspects are defined by analyzing variables such as quantity, speed, and density. This article addresses the challenge of appropriately dealing with the uncertainty of traffic variables and converting traffic data into understandable verbal expressions for drivers and urban planners. The study utilizes a clustering approach to analyze traffic variables and determine the traffic condition. A new fuzzy clustering method has been developed to enhance the performance of clustering methods, which is then used to detect abnormal traffic conditions on a route based on the value of traffic variables. The algorithm and proposed method have been evaluated on the traffic dataset of a high-traffic route in Tehran, the capital of Iran. The implementation results demonstrate the traffic condition on the selected route divided into six clusters.
DOI: 10.6084/m9.figshare.28787810.v1
title: Data generated for“Disentangling Bimodal and Unimodal Patterns in the Diurnal Cycle of Low clouds and Their Meteorological Drivers at SACOL”

description: This dataset is derived from Ka-band Zenith Radar observations conducted at the Semi-Arid Climate and Environment Observatory of Lanzhou University (SACOL) from 2014 to 2019. It provides the diurnal variation of low cloud frequency, converted to local time, and is categorized by year.
DOI: 10.6084/m9.figshare.7554680.v1
title: spreadsheet output from model run including tables, pivot tables, and raw data

description: Spreadsheet output of aquifer optimization model for small island developing states
DOI: 10.6084/m9.figshare.26978461.v2
title: Beam Input File from Snap-Through and Indirect Reduced-Order Modelling

description: Abaqus .inp file describing the compressed FE beam
DOI: 10.6084/m9.figshare.c.3609458_d2.v1
title: Additional file 3: Table S2. of A global analysis of the complex landscape of isoforms and regulatory networks of p63 in human cells and tissues

description: Expression database. Column A contains the names of the 1099 TFs in humans. Columns Bâ  BC provide the expression of the TFs in FPKM (fragments per kilobase of transcript per million), as calculated by Analysis Pipeline 1, across the 40 cell-types (52 experiments). (CSV 553 kb)
DOI: 10.6084/m9.figshare.22776221.v1
title: Data for: Fletcher et al: A fear of giants: behavioral responses to elephants rival that of predators

description: <strong>abr_data.csv: Data from experimental playbacks</strong> Video_ID: Video segment with detection ABR#: Automated behavioral response system unit number Date: Date of observation Time: Time of observation Audio_type: Vocalization treatment Audio_type2: Vocalization treatment, with elephant rumbles versus trumpets distinguished Animal_captured: Species on video Individuals#: Number of animals on video (and number of indivduals that were scorable for behaviour); if scorable &gt; 1, observations were averaged group: Number of animals in a group on video Video_Length: Length of video segment Delay Length: Amount of time between trigger and vocalization broadcasting Reserve: Protected area S: Southing coordinate of ABR unit E: Easting coordintate of ABR unit plot: plot of observation Run: Run observed in video (0 = No, 1 = Yes) Pre_Alert: Amount of time alert (vigilant) before treatment broadcast Pre_Not_alert: Amount of time not alert before treatment broadcast Total_Pre: Total amount of time before treatment broadcast Prop_Alert_Pre: Proportion of total time alert (vigilant) before treatment broadcast Post_Alert: Amount of time alert (vigilant) during / after treatment broadcast Post_Not_alert: Amount of time not alert during / after treatment broadcast Total_Post: Total amount of time during / after treatment broadcast Prop_Alert_Post: Proportion of total time alert (vigilant) during / after treatment broadcast <br> <strong>Fletcher_etal_code.R: R code used for analyzing data</strong> Generalized linear mixed models used for testing effects of treatments on the probability of running and the proportion of time spent vigilant.