cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5060211
title: Ngalau Gupin Cave Fossil Assemblage Specimen Database

description: Database denoting all fossil specimens excavated from Ngalau Gupin cave in 2018. This includes taxonomic identifications and taphonomic analyses.
DOI: 10.5281/zenodo.5040829
title: Monte-Carlo simulations of aerosol-based exposure to SARS-CoV-2 in a shop/bar

description: Data from new Monte-Carlo simulations of aerosol-based exposure to SARS-CoV-2 in shop and bar environments. For background and previous results see V. Vuorinen et al. Safety Science 130 (2020): 104866. The files are collected to a tar file that includes all data files used for analysis (binary files with NumPy data type .npy) and a readme.
DOI: 10.5281/zenodo.5040828
title: Monte-Carlo simulations of aerosol-based exposure to SARS-CoV-2 in a shop/bar

description: Data from new Monte-Carlo simulations of aerosol-based exposure to SARS-CoV-2 in shop and bar environments. For background and previous results see V. Vuorinen et al. Safety Science 130 (2020): 104866. The files are collected to a tar file that includes all data files used for analysis (binary files with NumPy data type .npy) and a readme.
DOI: 10.6084/m9.figshare.14899329.v2
title: Figure_3_Left_CL.txt

description: Data for validation denoising method
DOI: 10.6084/m9.figshare.14156408
title: Architectural Design Patterns Images Dataset

description: A comprehensive collection of images classified into various design patterns. It comprises 2,035 architectural design images from fourteen different architectural patterns viz., broker, layered, event-bus, pipe-and-filter, repository, microkernel, microservices, model view controller, peer-to-peer, presentation abstraction controller, client-server, space-based, representational state transfer (REST), and publisher-subscriber. There exist more than 100 design images in each pattern category.<br>
DOI: 10.6084/m9.figshare.14156408.v2
title: Architectural Design Patterns Images Dataset

description: A comprehensive collection of images classified into various design patterns.
DOI: 10.6084/m9.figshare.14899638
title: Lithium isotopes in kimberlites, lamproites and lamprophyres as tracers of source components and processes related to supercontinent cycles

description: Supplementary material 1. Published whole-rock data for studied orangeite and lamprophyre samples from the Eastern Dharwar and Bastar Craton, India.
DOI: 10.6084/m9.figshare.14899638.v1
title: Lithium isotopes in kimberlites, lamproites and lamprophyres as tracers of source components and processes related to supercontinent cycles

description: Supplementary material 1. Published whole-rock data for studied orangeite and lamprophyre samples from the Eastern Dharwar and Bastar Craton, India.
DOI: 10.6084/m9.figshare.14899641
title: Lithium isotopes in kimberlites, lamproites and lamprophyres as tracers of source components and processes related to supercontinent cycles

description: Supplementary material 2. Representative trace element compositions (ppm) of olivine from sample P12/6 (Chintalampalle pipe, Wajrakarur kimberlite field, Eastern Dharwar Craton) determined by LA-ICP-MS.
DOI: 10.6084/m9.figshare.14899641.v1
title: Lithium isotopes in kimberlites, lamproites and lamprophyres as tracers of source components and processes related to supercontinent cycles

description: Supplementary material 2. Representative trace element compositions (ppm) of olivine from sample P12/6 (Chintalampalle pipe, Wajrakarur kimberlite field, Eastern Dharwar Craton) determined by LA-ICP-MS.
DOI: 10.5281/zenodo.5060248
title: FASTQ files for 4DH dataset

description: FASTQ files for the project
DOI: 10.5281/zenodo.5041683
title: FASTQ files for 4DH dataset

description: FASTQ files for the project
DOI: 10.25646/8743
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.6084/m9.figshare.3749556.v1
title: Quantitative evaluation of malignant gliomas damage induced by photoactivation of IR700 dye

description: The processes involved in malignant gliomas damage were quantitatively evaluated by microscopy. The near-infrared fluorescent dye IR700 that is conjugated to an anti-CD133 antibody (IR700-CD133) specifically targets malignant gliomas (U87MG) and stem cells (BT142) and is endocytosed into the cells. The gliomas are then photodamaged by the release of reactive oxygen species (ROS) and the heat induced by illumination of IR700 by a red laser, and the motility of the vesicles within these cells is altered as a result of cellular damage. To investigate these changes in motility, we developed a new method that measures fluctuations in the intensity of phase-contrast images obtained from small areas within cells. The intensity fluctuation in U87MG cells gradually decreased as cell damage progressed, whereas the fluctuation in BT142 cells increased. The endocytosed IR700 dye was co-localized in acidic organelles such as endosomes and lysosomes. The pH in U87MG cells, as monitored by a pH indicator, was decreased and then gradually increased by the illumination of IR700, while the pH in BT142 cells increased monotonically. In these experiments, the processes of cell damage were quantitatively evaluated according to the motility of vesicles and changes in pH. Phototoxicity of IR700 dye conjugated with anti-CD133 antibody to gliomas was evaluated quantitatively by the measurement of vesicle fluctuation and pH indicator.
DOI: 10.6084/m9.figshare.3749556
title: Quantitative evaluation of malignant gliomas damage induced by photoactivation of IR700 dye

description: The processes involved in malignant gliomas damage were quantitatively evaluated by microscopy. The near-infrared fluorescent dye IR700 that is conjugated to an anti-CD133 antibody (IR700-CD133) specifically targets malignant gliomas (U87MG) and stem cells (BT142) and is endocytosed into the cells. The gliomas are then photodamaged by the release of reactive oxygen species (ROS) and the heat induced by illumination of IR700 by a red laser, and the motility of the vesicles within these cells is altered as a result of cellular damage. To investigate these changes in motility, we developed a new method that measures fluctuations in the intensity of phase-contrast images obtained from small areas within cells. The intensity fluctuation in U87MG cells gradually decreased as cell damage progressed, whereas the fluctuation in BT142 cells increased. The endocytosed IR700 dye was co-localized in acidic organelles such as endosomes and lysosomes. The pH in U87MG cells, as monitored by a pH indicator, was decreased and then gradually increased by the illumination of IR700, while the pH in BT142 cells increased monotonically. In these experiments, the processes of cell damage were quantitatively evaluated according to the motility of vesicles and changes in pH. Phototoxicity of IR700 dye conjugated with anti-CD133 antibody to gliomas was evaluated quantitatively by the measurement of vesicle fluctuation and pH indicator.
DOI: 10.6084/m9.figshare.3803016
title: Nanoporous carbon materials with enhanced supercapacitance performance and non-aromatic chemical sensing with C<sub>1</sub>/C<sub>2</sub> alcohol discrimination

description: We have investigated the textural properties, electrochemical supercapacitances and vapor sensing performances of bamboo-derived nanoporous carbon materials (NCM). Bamboo, an abundant natural biomaterial, was chemically activated with phosphoric acid at 400 °C and the effect of impregnation ratio of phosphoric acid on the textural properties and electrochemical performances was systematically investigated. Fourier transform-infrared (FTIR) spectroscopy confirmed the presence of various oxygen-containing surface functional groups (i.e. carboxyl, carboxylate, carbonyl and phenolic groups) in NCM. The prepared NCM are amorphous in nature and contain hierarchical micropores and mesopores. Surface areas and pore volumes were found in the range 218–1431 m<sup>2</sup> g<sup>−1</sup> and 0.26–1.26 cm<sup>3</sup> g<sup>−1</sup>, respectively, and could be controlled by adjusting the impregnation ratio of phosphoric acid and bamboo cane powder. NCM exhibited electrical double-layer supercapacitor behavior giving a high specific capacitance of <i>c</i>.256 F g<sup>−1</sup> at a scan rate of 5 mV s<sup>−1</sup> together with high cyclic stability with capacitance retention of about 92.6% after 1000 cycles. Furthermore, NCM exhibited excellent vapor sensing performance with high sensitivity for non-aromatic chemicals such as acetic acid. The system would be useful to discriminate C<sub>1</sub> and C<sub>2</sub> alcohol (methanol and ethanol).
DOI: 10.6084/m9.figshare.3803016.v1
title: Nanoporous carbon materials with enhanced supercapacitance performance and non-aromatic chemical sensing with C<sub>1</sub>/C<sub>2</sub> alcohol discrimination

description: We have investigated the textural properties, electrochemical supercapacitances and vapor sensing performances of bamboo-derived nanoporous carbon materials (NCM). Bamboo, an abundant natural biomaterial, was chemically activated with phosphoric acid at 400 °C and the effect of impregnation ratio of phosphoric acid on the textural properties and electrochemical performances was systematically investigated. Fourier transform-infrared (FTIR) spectroscopy confirmed the presence of various oxygen-containing surface functional groups (i.e. carboxyl, carboxylate, carbonyl and phenolic groups) in NCM. The prepared NCM are amorphous in nature and contain hierarchical micropores and mesopores. Surface areas and pore volumes were found in the range 218–1431 m<sup>2</sup> g<sup>−1</sup> and 0.26–1.26 cm<sup>3</sup> g<sup>−1</sup>, respectively, and could be controlled by adjusting the impregnation ratio of phosphoric acid and bamboo cane powder. NCM exhibited electrical double-layer supercapacitor behavior giving a high specific capacitance of <i>c</i>.256 F g<sup>−1</sup> at a scan rate of 5 mV s<sup>−1</sup> together with high cyclic stability with capacitance retention of about 92.6% after 1000 cycles. Furthermore, NCM exhibited excellent vapor sensing performance with high sensitivity for non-aromatic chemicals such as acetic acid. The system would be useful to discriminate C<sub>1</sub> and C<sub>2</sub> alcohol (methanol and ethanol).
DOI: 10.6084/m9.figshare.3980160
title: An immuno-wall microdevice exhibits rapid and sensitive detection of IDH1-R132H mutation specific to grade II and III gliomas

description: World Health Organization grade II and III gliomas most frequently occur in the central nervous system (CNS) in adults. Gliomas are not circumscribed; tumor edges are irregular and consist of tumor cells, normal brain tissue, and hyperplastic reactive glial cells. Therefore, the tumors are not fully resectable, resulting in recurrence, malignant progression, and eventual death. Approximately 69–80% of grade II and III gliomas harbor mutations in the isocitrate dehydrogenase 1 gene (<i>IDH1</i>), of which 83–90% are found to be the <i>IDH1-R132H</i> mutation. Detection of the <i>IDH1-R132H</i> mutation should help in the differential diagnosis of grade II and III gliomas from other types of CNS tumors and help determine the boundary between the tumor and normal brain tissue. In this study, we established a highly sensitive antibody-based device, referred to as the immuno-wall, to detect the <i>IDH1-R132H</i> mutation in gliomas. The immuno-wall causes an immunoreaction in microchannels fabricated using a photo-polymerizing polymer. This microdevice enables the analysis of the <i>IDH1</i> status with a small sample within 15 min with substantially high sensitivity. Our results suggested that 10% content of the <i>IDH1-R132H</i> mutation in a sample of 0.33 μl volume, with 500 ng protein, or from 500 cells is theoretically sufficient for the analysis. The immuno-wall device will enable the rapid and highly sensitive detection of the <i>IDH1-R132H</i> mutation in routine clinical practice.
DOI: 10.6084/m9.figshare.3980160.v1
title: An immuno-wall microdevice exhibits rapid and sensitive detection of IDH1-R132H mutation specific to grade II and III gliomas

description: World Health Organization grade II and III gliomas most frequently occur in the central nervous system (CNS) in adults. Gliomas are not circumscribed; tumor edges are irregular and consist of tumor cells, normal brain tissue, and hyperplastic reactive glial cells. Therefore, the tumors are not fully resectable, resulting in recurrence, malignant progression, and eventual death. Approximately 69–80% of grade II and III gliomas harbor mutations in the isocitrate dehydrogenase 1 gene (<i>IDH1</i>), of which 83–90% are found to be the <i>IDH1-R132H</i> mutation. Detection of the <i>IDH1-R132H</i> mutation should help in the differential diagnosis of grade II and III gliomas from other types of CNS tumors and help determine the boundary between the tumor and normal brain tissue. In this study, we established a highly sensitive antibody-based device, referred to as the immuno-wall, to detect the <i>IDH1-R132H</i> mutation in gliomas. The immuno-wall causes an immunoreaction in microchannels fabricated using a photo-polymerizing polymer. This microdevice enables the analysis of the <i>IDH1</i> status with a small sample within 15 min with substantially high sensitivity. Our results suggested that 10% content of the <i>IDH1-R132H</i> mutation in a sample of 0.33 μl volume, with 500 ng protein, or from 500 cells is theoretically sufficient for the analysis. The immuno-wall device will enable the rapid and highly sensitive detection of the <i>IDH1-R132H</i> mutation in routine clinical practice.
DOI: 10.6084/m9.figshare.3834033.v1
title: The novel functional nucleic acid iRed effectively regulates target genes following cytoplasmic delivery by faint electric treatment

description: An intelligent shRNA expression device (iRed) contains the minimum essential components needed for shRNA production in cells, and could be a novel tool to regulate target genes. However, general delivery carriers consisting of cationic polymers/lipids could impede function of a newly generated shRNA via electrostatic interaction in the cytoplasm. Recently, we found that faint electric treatment (fET) of cells enhanced delivery of siRNA and functional nucleic acids into the cytoplasm in the absence of delivery carriers. Here, we examined fET of cells stably expressing luciferase in the presence of iRed encoding anti-luciferase shRNA. Transfection of lipofectamine 2000 (LFN)/iRed lipoplexes showed an RNAi effect, but fET-mediated iRed transfection did not, likely because of the endosomal localization of iRed after delivery. However, fET in the presence of lysosomotropic agent chloroquine significantly improved the RNAi effect of iRed/fET to levels that were higher than those for the LFN/iRed lipoplexes. Furthermore, the amount of lipid droplets in adipocytes significantly decreased following fET with iRed against resistin in the presence of chloroquine. Thus, iRed could be a useful tool to regulate target genes following fET-mediated cytoplasmic delivery with endosomal escape devices.
DOI: 10.6084/m9.figshare.3834033
title: The novel functional nucleic acid iRed effectively regulates target genes following cytoplasmic delivery by faint electric treatment

description: An intelligent shRNA expression device (iRed) contains the minimum essential components needed for shRNA production in cells, and could be a novel tool to regulate target genes. However, general delivery carriers consisting of cationic polymers/lipids could impede function of a newly generated shRNA via electrostatic interaction in the cytoplasm. Recently, we found that faint electric treatment (fET) of cells enhanced delivery of siRNA and functional nucleic acids into the cytoplasm in the absence of delivery carriers. Here, we examined fET of cells stably expressing luciferase in the presence of iRed encoding anti-luciferase shRNA. Transfection of lipofectamine 2000 (LFN)/iRed lipoplexes showed an RNAi effect, but fET-mediated iRed transfection did not, likely because of the endosomal localization of iRed after delivery. However, fET in the presence of lysosomotropic agent chloroquine significantly improved the RNAi effect of iRed/fET to levels that were higher than those for the LFN/iRed lipoplexes. Furthermore, the amount of lipid droplets in adipocytes significantly decreased following fET with iRed against resistin in the presence of chloroquine. Thus, iRed could be a useful tool to regulate target genes following fET-mediated cytoplasmic delivery with endosomal escape devices.
DOI: 10.6084/m9.figshare.14899329
title: Data For "Denoising of spectra by adaptive multiwindow polynomial fitting".

description: Data for validation denoising method
DOI: 10.6084/m9.figshare.14899329.v5
title: Data For "Denoising of spectra by adaptive multiwindow polynomial fitting".

description: Data for validation denoising method
DOI: 10.5517/ccdc.csd.cc2769g7
title: CCDC 2061638: Experimental Crystal Structure Determination

description: Related Article: Reike Clauss, Aleksandr Kazimir, Axel Straube, Evamarie Hey-Hawkins|2021|Inorg.Chem.|60|8722|doi:10.1021/acs.inorgchem.1c00694
DOI: 10.5517/ccdc.csd.cc26zbq8
title: CCDC 2054950: Experimental Crystal Structure Determination

description: Related Article: Wen-Min Wang, Wan-Ting Wang, Mei-Ying Wang, Ai-Ling Gu, Tian-Ding Hu, Ya-Xin Zhang, Zhi-Lei Wu|2021|Inorg.Chem.|60|9122|doi:10.1021/acs.inorgchem.1c01104
DOI: 10.5517/ccdc.csd.cc23v7cl
title: CCDC 1961629: Experimental Crystal Structure Determination

description: Related Article: Jinsong Chai, Sha Yang, Tao Chen, Qinzhen Li, Shuxin Wang, Manzhou Zhu|2021|Inorg.Chem.|60|9050|doi:10.1021/acs.inorgchem.1c01049
DOI: 10.5517/ccdc.csd.cc25f17x
title: CCDC 2008528: Experimental Crystal Structure Determination

description: Related Article: Jinsong Chai, Sha Yang, Tao Chen, Qinzhen Li, Shuxin Wang, Manzhou Zhu|2021|Inorg.Chem.|60|9050|doi:10.1021/acs.inorgchem.1c01049
DOI: 10.5517/ccdc.csd.cc257byq
title: CCDC 2003063: Experimental Crystal Structure Determination

description: Related Article: Jinsong Chai, Sha Yang, Tao Chen, Qinzhen Li, Shuxin Wang, Manzhou Zhu|2021|Inorg.Chem.|60|9050|doi:10.1021/acs.inorgchem.1c01049
DOI: 10.5517/ccdc.csd.cc27ynhc
title: CCDC 2084083: Experimental Crystal Structure Determination

description: Related Article: Hui-Li Liu, Xiao-Tong Li, Heng-Zhi Tian, Xing-Wen Sun|2021|Org.Lett.|23|4579|doi:10.1021/acs.orglett.1c01235
DOI: 10.5517/ccdc.csd.cc27z5br
title: CCDC 2084574: Experimental Crystal Structure Determination

description: Related Article: Tomohiro Kikuchi, Keiji Yamada, Takeshi Yasui, Yoshihiko Yamamoto|2021|Org.Lett.|23|4710|doi:10.1021/acs.orglett.1c01436
DOI: 10.5517/ccdc.csd.cc27zygn
title: CCDC 2085322: Experimental Crystal Structure Determination

description: Related Article: Nilanjana Sen, Nasrina Parvin, Srinu Tothadi, Shabana Khan|2021|Organometallics|40|1874|doi:10.1021/acs.organomet.1c00203
DOI: 10.5281/zenodo.5060292
title: Curcuma longa decontaminated

description: .
DOI: 10.5281/zenodo.5060291
title: Curcuma longa decontaminated

description: .
DOI: 10.5281/zenodo.5060273
title: Coherent Electric Field Manipulation of Fe3+-spins in PbTiO3. Open data set

description: Data supporting figures 3 and 4 of the related publication.
DOI: 10.5281/zenodo.5060272
title: Coherent Electric Field Manipulation of Fe3+-spins in PbTiO3. Open data set

description: Data supporting figures 3 and 4 of the related publication.
DOI: 10.5281/zenodo.5040641
title: Practitioners Interpretation of conditional Requirements

description: This dataset contains (1) the survey protocol and (2) the survey responses of the study on how practitioners interpret conditional requirements. A readme provides guidance on how to comprehend the data.
DOI: 10.5281/zenodo.5060335
title: R-scripts for the calculation of HW and Bioclimatic models in: "Small vertebrate and mollusc community response to the Holocene environment and climate changes in the Kraków-Częstochowa Upland (Poland)"

description: HW_Holocene: Tables and R script used for calculation of HW percentage values. PalBER_Bioclimaticmodel_modified: Tables and R script used for the calculation of the climate values through Bioclimatic model. Modified after Royer et al., 2020.
DOI: 10.5281/zenodo.5060334
title: R-scripts for the calculation of HW and Bioclimatic models in: "Small vertebrate and mollusc community response to the Holocene environment and climate changes in the Kraków-Częstochowa Upland (Poland)"

description: HW_Holocene: Tables and R script used for calculation of HW percentage values. PalBER_Bioclimaticmodel_modified: Tables and R script used for the calculation of the climate values through Bioclimatic model. Modified after Royer et al., 2020.
DOI: 10.6073/pasta/a6e83ed5ac01ea8415f4570bdb975b4c
title: PRE02 Reproductive effort of Big Bluestem, Indiangrass and Little Bluestem on selected Konza Prairie LTER watersheds

description: This data set focuses on seed production, flowering stem mass, height, and population densities of three dominant prairie grasses: Andropogon gerardii (ANGE), Sorgastrum nutans (SONU), and Schizachyrium scoparium (ANSC) in selected Konza Prairie LTER watersheds. Data set includes measurements of flowering stem height (m), density (no. per sq. m) and production (grams per sq. m) and total seed weight (grams) and production (grams per sq. on 2 soil types (shallow and deep) in watersheds representing different burning-grazing treatment combinations. Specific watersheds sampled have varied over time. Current watersheds include: 001d, R01a, R01b, 002c, 002d, 004a, 004b, 020b, R20a, R20b, 0SpA, 0SpB, 0SuA, 0SuB, 00FA, 00FB, 00WA and 00WB Sampling is done once a year in October/November (end of growing season). (Sampling design slightly altered from PRE01).
DOI: 10.6084/m9.figshare.14883222
title: Tree_IQTree

description: IQTREE_13PCGs<br>
DOI: 10.6084/m9.figshare.14883222.v1
title: Tree_IQTree

description: IQTREE_13PCGs<br>
DOI: 10.34740/kaggle/dsv/2388719
title: 2021 World Population (updated daily)
DOI: 10.6084/m9.figshare.14883039
title: saturation

description: PCGs saturation<br>
DOI: 10.6084/m9.figshare.14883039.v1
title: saturation

description: PCGs saturation<br>
DOI: 10.6084/m9.figshare.14882955
title: Data Matrix_38_13NN

description: 38_NN38_AAConcatenate with Phylosuite<br>
DOI: 10.6084/m9.figshare.14882955.v1
title: Data Matrix_38_13NN

description: 38_NN38_AAConcatenate with Phylosuite<br>
DOI: 10.6084/m9.figshare.14882613
title: Bankit

description: GenBankSRA table
DOI: 10.6084/m9.figshare.14882613.v1
title: Bankit

description: GenBankSRA table