cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.4k2t3/3
title: Number cuckoo eggs

description: Number of cuckoo eggs in magpie and crow nests in the two studied populations. See previous file for further description.
DOI: 10.5061/dryad.4k2t3/4
title: reproductive success

description: Cuckoo reproductive success in crow and magpie nest. Cuckooo clutch = number of hatched cuckoo chicks; Cuckoo fledged = number of cuckoo chicks that survived untill fledging; Cuckoos dead = number of cuckoo chicks that died before fledging. See previous file for further description.
DOI: 10.5061/dryad.591d4/1
title: Complete dataset for Bruneaux 2016

description: This file is a tab-delimited text file containing all the relevant data needed to reproduce the analyses presented in Bruneaux 2016. The first line is a header containing column names. Each row corresponds to one fish individual. Each column corresponds to one variable, with data collected either during field work or during post-processing of the samples in the lab (see the ReadMe file for details about the variables).
DOI: 10.5061/dryad.65m87/19
title: Case_Study_1_plant_height_corn_Raw_Image_Data_4_of_10
DOI: 10.5061/dryad.65m87/20
title: Case_Study_1_plant_height_corn_Raw_Image_Data_5_of_10
DOI: 10.5061/dryad.65m87/21
title: Case_Study_1_plant_height_corn_Raw_Image_Data_6_of_10
DOI: 10.5061/dryad.65m87/22
title: Case_Study_1_plant_height_corn_Raw_Image_Data_7_of_10
DOI: 10.5061/dryad.65m87/23
title: Case_Study_1_plant_height_corn_Raw_Image_Data_8_of_10
DOI: 10.5061/dryad.65m87/24
title: Case_Study_1_plant_height_corn_Raw_Image_Data_9_of_10
DOI: 10.5061/dryad.65m87/25
title: Case_Study_1_plant_height_corn_Raw_Image_Data_10_of_10_and_GCPs

description: Raw individual images with gps log and shapefile of ground control points of case study 1 corn plant height measurement. The raw images are separated into ten files.
DOI: 10.5061/dryad.6hb49/10
title: DT1d2-1_extem_130105084248000

description: Original ROTEM Data
DOI: 10.5061/dryad.6hb49/11
title: DT1d2-1_heptem_130105084418000

description: Original ROTEM Data
DOI: 10.5061/dryad.6hb49/12
title: Original ROTEM Data

description: Zip file of all original ROTEM data
DOI: 10.5061/dryad.6hb49/13
title: Original Multiplate Data

description: Zip file of original Multiple data
DOI: 10.5061/dryad.7g555/1
title: Haplotype frequencies per population for Ciona robusta and Ciona intestinalis

description: Excel file containing haplotype frequencies per populations and per regions for Ciona robusta (1st sheet) and Ciona intestinalis (2nd sheet) using COX3-ND1 dataset (Tables A) and concatenated (COI+COX3-ND1) dataset (Tables B)
DOI: 10.5061/dryad.7g555/2
title: Sequences of haplotypes COX3-ND1 and concatenated mtDNA for Ciona robusta and Ciona intestinalis

description: Fasta sequences of COX3-ND1 and concatenated haplotypes (COI + COX3-ND1) for Ciona robusta and Ciona intestinalis
DOI: 10.5061/dryad.7s5s4/2
title: plot x species matrix

description: This file contains the raw plots x species matrix (percentage cover) for all 48 plots, over four consecutive years. Plot name, grassland identifier, treatment and time since treatment are given as extra columns.
DOI: 10.5061/dryad.bg04r/1
title: Lingle_Bonar_DryadDataDescription

description: This Microsoft Word file describes data columns used in two data files: File 1 filename = Fawn_Sightings_Raw_Data which has data for individual sightings of deer fawns. File 2 = Fawn_Summary_Data.xlsx has a summary row for each fawn.
DOI: 10.5061/dryad.bg04r/2
title: Fawn_Sightings_Raw_Data

description: This file has data from individual sightings of mule deer and white-tailed deer fawns. Data columns include identifying characteristics for fawns (species), habitat characteristics obtained using GIS, and climatic variables. Information about individual data columns is in the accompanying Microsoft Word file "Lingle_Bonar_DryadData Description.docx".
DOI: 10.5061/dryad.cg0gn/1
title: Developmental environment effects on sexual selection in Drosophila melanogaster

description: The data is divided into three different tabs, according to the experiments performed (see paper). For any queries, suggestions or corrections please contact the authors. We provide an explanation of the data in the attached file.
DOI: 10.5061/dryad.f3r67.1
title: Data from: The gut microbiota of the pine weevil is similar across Europe and resembles that of other conifer-feeding beetles
DOI: 10.5061/dryad.f3r67.2/1.2
title: Quality filtered 454 sequence data
DOI: 10.5061/dryad.f3r67.2/2.2
title: Mapping file

description: Mapping file for quality trimmed 454 sequences of bacterial 16s rRNA from the gut of Hylobius abietis
DOI: 10.5061/dryad.f3r67.2/3.2
title: OTU table generated after closed reference OTU picking strategy
DOI: 10.5061/dryad.f3r67.2/4.2
title: OTU table generated after open reference OTU picking strategy
DOI: 10.5061/dryad.f3r67.2/5.2
title: Phylogenetic tree of bacterial sequences from different beetles feeding on coniferous and non coniferous food sources

description: The phylogeny was reconstructed with FastTree using the GTR model.
DOI: 10.5061/dryad.f3r67.2/6.2
title: Alignment_for_meta-analysis

description: Our data set on H. abietis-associated bacteria was expanded by the addition of 308 bacterial sequences from GenBank associated with ten different insect host species belonging to four genera. These sequences included bacterial taxa found in the gut microbiota of five species of bark beetles belonging to two genera that feed on conifers, as well as five weevil species belonging to two genera that feed on red palm trees and ornamental plants, respectively . We only selected culture-independent studies. Database sequences were aligned with those obtained in this study using SINA. The alignment was imported into ARB  together with the SILVA 115 database and a phylogenetic tree was constructed. We refined the alignment by selecting all H.abietis-associated sequences and those of closely related bacterial type strains present in the SILVA database. The final alignment was produced by filtering some sequences: we only retained those sequences from the pine weevil that corresponded to the 50 most prevalent OTUs and in addition those of minor OTUs that clustered together with other bark beetle or weevil-associated bacterial sequences. We also eliminated those bacterial sequences from bark beetles and weevils (other than H. abietis) that did not cluster together with any other insect-associated bacteria in this study.
DOI: 10.5061/dryad.f3r67.2/7.2
title: Full raw 454 sequencing fasta file
DOI: 10.5061/dryad.f3r67.2/8.2
title: Full raw 454 sequencing quality file
DOI: 10.5061/dryad.f4324/1
title: PlosOne_Data_Job

description: Data were collected from audio recordings made in the field in Kalamazoo County, MI during the summer of 2013 using Wildlife Acoustics Song Meter 2. Values were extracted from recordings using custom script written in MatLab, as well as ArcMap by ESRI. 'Subset' refers to the number of microphones used to make maps, 'Additional Microphones' refer to the presence (Y) or absence (N) of additional flanking microphones, 'PlaybackLocation' refers to the location of the noise playback either within (Inside) or at the edge of arrays (Outside), and 'SPL' refers to sound pressure level in decibels (dB).
DOI: 10.5061/dryad.h8j57/1
title: MacLeodPoulin_2016_BL

description: Snail survival data
DOI: 10.5061/dryad.j42m7.1
title: Data from: Global effects of soil and climate on leaf photosynthetic traits and rates
DOI: 10.5061/dryad.j42m7.2
title: Data from: Global effects of soil and climate on leaf photosynthetic traits and rates
DOI: 10.5061/dryad.j42m7.2/1.2
title: photosynthesis_trait_worldwide

description: The file includes:A legend sheet with all variables and their description. A data sheet including trait data (SLA, Nmass, Pmass, Amass, Narea, Parea, Aarea, gs) associated with soil and climate variables which derived (except for annual precipitation and temperature) from worldwide soil and climate datasetsTrait data were collated from sources listed in 'references' sheet and in Wright et al 2004 Nature.
DOI: 10.5061/dryad.jd23d/1
title: Wisangocaris matrix with PAUP batch & log, NEXUS format

description: Character matrix and PAUP log, in NEXUS format with Wisangocaris barbarahardyae gen. et sp. nov. coded in the 763-character matrix of LEGG, D. A. 2014. Sanctacaris uncata: the oldest chelicerate (Arthropoda). Naturwissenschaften, 101, 1065–1073.
DOI: 10.5061/dryad.jd23d/2
title: Wisangocaris Strict Consensus Tree

description: Strict consensus tree of 3000 equally most parsimonious trees, using equally weighted characters, produced with PAUP* (Swofford 2002).
DOI: 10.5061/dryad.pc6sd/3
title: var_Selommes_2002_2005

description: Genotypes of cultivars seed lots potentially sown from 2002 to 2005. Some cultivar names were changed due to confidentiality agreement with seeders.
DOI: 10.5061/dryad.pc6sd/4
title: pop_caract_2002_to_2005

description: Feral populations characteristics as Number of plants, Density and Threatments.
DOI: 10.5061/dryad.pc6sd/5
title: sub_experiment_2007

description: Genotypes of OSR plants sampled in S1 Appendix.
DOI: 10.5061/dryad.vd156/1
title: Supporting data for the paper 'State Space Reduction and Equivalence Class Sampling for a Molecular Self-Assembly Model'

description: The equivalence class sample used to generate Figure 5 as an .Rdata workspace file for R. Upon loading this data into the R environment, one should type “Message” to receive an explanation of the data structure.
DOI: 10.5061/dryad.00v07/1
title: Filtered Contigs

description: File (FASTA format) containing the sequence of all contigs obtained from de novo assembly of transcriptome sequencing. Only contigs of at least 200 nt and having average coverage of 20x are included.
DOI: 10.5061/dryad.00v07/2
title: Raw counts of minor allele frequency at each SNP position

description: CSV file with counts of reads supporting each allele at each SNP position and in each population
DOI: 10.5061/dryad.00v07/3
title: Raw counts of minor allele frequency at each SNP position (5' UTR)

description: CSV file with counts of reads supporting each allele at each SNP position and in each population
DOI: 10.5061/dryad.00v07/4
title: Raw counts of minor allele frequency at each SNP position (3' UTR)

description: CSV file with counts of reads supporting each allele at each SNP position and in each population
DOI: 10.5061/dryad.00v07/5
title: COX-I multiple alignment for barcoding

description: Alignment of the Cox-1 reference sequence we used to barcode our samples– labelled JN259763 – with a set of Cox-1 sequences published more recently: http://datadryad.org/resource/doi:10.5061/dryad.6mh29
DOI: 10.5061/dryad.144sv/1
title: Schlaich_etal_2016_JAE_gps_tracking_data_20160802

description: This file contains the GPS-tracking data of Montagu’s Harriers used for analyses on behavior during the wintering season and contains the following columns: season (name of the bird, phase of annual cycle, years), date_time (date and time in UTC), latitude, longitude, speed_2d (instantaneous speed measured by the GPS-device).
DOI: 10.5061/dryad.144sv/2
title: Schlaich_etal_2016_JAE_grasshopper_count_data_20160802

description: This file contains the grasshopper count data collected in 2014 and 2015 at five sites in Senegal and contains the following columns: year, month, area, id (grid point ID, transect ID), lat.start, long.start, lat.end, long.end (coordinates of starting and end points of transects), date_time, grasshoppers_small, grasshoppers_big (number of grasshoppers counted 1 m left and right of transect line).
DOI: 10.5061/dryad.1fc41/1
title: sunbird_data_fordryad

description: The data file contains two worksheets with data on Nectarinia moreaui and N. fuelleborni, one with data from sonogram-based measurements of song recordings, and one with measurements of culmen and upper mandible length.
DOI: 10.5061/dryad.2dr33/4
title: NGS_pipeline_scripts

description: Scripts for analysis of high-throughput sequencing data.
DOI: 10.5061/dryad.4k2t3/5
title: Magpie nest distances

description: Distance to the nearest neighbour nest ("Distance") in magpies, in the two studied populations. See previous file for further description.
DOI: 10.5061/dryad.53h16/1
title: Espírito-Santo et al (2016) - Philosophical Transactions

description: This is an excel file containing several variables for each of the 89 municipalities of the north of Minas Gerais region in two years (2000 and 2015). It includes biophysical and social-economic drivers of land use change, welfare indicators, Cerrado gross area lost and gained, and Cerrado net area change between 2000 and 2015. These variables include social-economic indicators obtained from public databases (Brazilian Institute for Geography and Statistics-IBGE and United Nations Development Programme-UNDP) and biophysical variables obtained through Geographic Information Systems.
DOI: 10.5061/dryad.60j84/1
title: Raw data from experiment
DOI: 10.5061/dryad.627sf/1
title: Data_OIK-03341.R2

description: Data_OIK-03341.R2.csv contains the data on nematode feeding type abundances and community indices, as well as the data used in the Structural Equation Models of the progressive aboveground mammal and invertebrate exclusion effects on the abundance of bacterivorous, fungivorous, plant-feeding and omni-carnivorous nematode abundance via pathways of plants, soil nutrients, soil microbial biomass, and soil environment in both short- and tall-grass vegetation.
DOI: 10.5061/dryad.80150/1
title: Trajectories
DOI: 10.5061/dryad.80150/2
title: AFC
DOI: 10.5061/dryad.80150/3
title: ProcessedData
DOI: 10.5061/dryad.8q57v/1
title: Liatris Data

description: Data-set containing demographic information for Liatris ohlingerae from 2000-2011
DOI: 10.5061/dryad.b7d7v/1
title: Wolf data for Wisconsin and Michigan

description: Wolf population size, culling quota, days with delisting or culling allowed, wolf area, pack size and reproduction
DOI: 10.5061/dryad.bg04r/3
title: Fawn_Summary_Data

description: This file has summary data for mule deer and white-tailed deer fawns. We used data from individual sightings (see data file "Fawn_Sightings_Raw_Data.xlsx") to obtain an average value for several habitat traits. This file also includes climatic data and data on female density. Information about individual data columns is in the accompanying Microsoft Word file "Lingle_Bonar_DryadData Description.docx".
DOI: 10.5061/dryad.bt36t/1
title: Data for Durations and delays in TB patients, Mumbai

description: Data for Durations and delays in TB patients, Mumbai
DOI: 10.5061/dryad.cg7b7/1
title: Supplementary_AlgorithmR

description: The following coarse algorithm gives an outline of how the estimate for CPD is calculated
DOI: 10.5061/dryad.h5d55/1
title: Genetic_scores

description: A table providing individual fish IDs, population IDs, the locus used to test for the sex of the fish, the actual sex of the fish and the sex independently attributed to the fish by four testers based on their reading of the results of the genotyping of the locus in exam.
DOI: 10.5061/dryad.h5d55/2
title: Bayesian-sex-calling

description: The R script and an example of its use to calculate the posterior that a fish is male after three subsequent genetic tests.
DOI: 10.5061/dryad.jb17n/1
title: Data_files_Lolium_perenne_Rabier_et_al_2015_PLOS_ONE

description: The .zip file inclosed two files: Phenotypic_data_RGA_PBarre_12112015 with the Plant growth rate of 405 genotypes of perennial ryegrass and Genotypic_data_RGA_PBarre_12112015 with the genotypic data (SNP scoring 0, 1, 2 and the average per marker for missing data) of the same 405 genotypes.
DOI: 10.5061/dryad.jd23d/3
title: Wisangocaris Majority-Rule Consensus Tree

description: Majority-rule consensus tree of 3000 most parsimonious trees of 1935 steps (CI = 0.4106; RI = 0.8109), using equally weighted characters, produced with PAUP* (Swofford 2002).
DOI: 10.5061/dryad.jd23d/4
title: Character coding for Wisangocaris

description: Character coding for Wisangocaris barbarahardyae gen. et sp. nov. in the Legg (2014) matrix, excluding inapplicables (-) and unknowns (?), which leaves a total of 131 characters.
DOI: 10.5061/dryad.n3mj3/1
title: raw trait and fitness data

description: Trait measurements for F2 hybrids and F1 parentals, survival and growth rate in field enclosures, and isotopes (d13C and d15N) of survivors. Data for high and low-density treatments in Crescent Pond (CP) and Little Lake (LL).
DOI: 10.5061/dryad.n3mj3/2
title: stable isotope data

description: Stable isotope data (d13C and d15N) for wild-caught pupfishes and resources in Crescent Pond and Little Lake.
DOI: 10.5061/dryad.n3mj3/3
title: Crescent Pond - size-corrected trait data + survival + growth + d13C + d15N

description: Size-corrected trait residuals plus survival, growth, and isotope data used for analyses of Crescent Pond high and low-density field enclosures.
DOI: 10.5061/dryad.n3mj3/4
title: Little Lake - size-corrected trait data + survival + growth + d13C + d15N

description: Size-corrected trait residuals plus survival, growth, and isotope data used for analyses of Little Lake high and low-density field enclosures.
DOI: 10.5061/dryad.n3mj3/5
title: size-correction and fitness landscape plotting script

description: R code for size-correction of raw trait data and fitness landscape plotting using the Fields package in R.
DOI: 10.5061/dryad.nb028/1
title: Unigene

description: Assembly unigene set from Ginkgo biloba transcriptome
DOI: 10.5061/dryad.nd1js/1
title: Onthophagus spp six3 and otd gene sequences

description: Sequence and associated annotations for O. taurus six3 and otd genes and O. sagittarius six3 and otd transcripts. Flat file Genbank format.
DOI: 10.5061/dryad.nd1js/2
title: Insect SIX protein family sequences and tree (data for Figure S1)

description: Aligned sequences and RaxML generated phylogram of selected insect SIX proteins.
DOI: 10.5061/dryad.pj763/1
title: Organism concentrations in mesocosm tanks

description: Concentrations of zooplankton species (see Table 1 for species codes), Chaoborus larvae, and total chlorophyll (phytoplankton and periphyton) in experimental mesocosms (treatments noted) on each sampling date. Available data presented as micrograms/L.
DOI: 10.5061/dryad.t570g/1
title: Landscape disturbance variables and woylie capture rate over time

description: Sheet one contains the capture rate of woylies at each site between 1994 and 2012. Blank cells indicate no sample collected during that year. Sheet two contains the measured road network density, proximity to agriculture and timber harvesting history of each of the 22 grid and 5 transect locations.
DOI: 10.5061/dryad.v7h28/17
title: Etracheiphila_BuffGH

description: Erwinia tracheiphila embl file with four merged chromosomal contigs for viewing and editing as a single file in Artemis software from Sanger Institute.
DOI: 10.5061/dryad.442dv/1
title: Original Operational Taxonomic Unit (OTU) Table

description: This is the original operational taxonomic unit (OTU) table resulting from the sequences clustering prior to any filtering of OTUs.
DOI: 10.5061/dryad.442dv/2
title: Final Operational Taxonomic Unit (fOTU) Table

description: The filtered operational taxonomic unit (OTU) table that excludes OTUs that failed to align with PyNAST or were classified as Archaea and Bacteria. This OTU table corresponds to the final OTU (fOTU) table listed in the manuscript.
DOI: 10.5061/dryad.442dv/3
title: Combined Operational Taxonomic Unit (OTU) Table

description: This operational taxonomic unit (OTU) table is the same as the final OTU (fOTU) table, EXCEPT the technical replicates have been combined into one sample. Therefore there are no A and B samples anymore and they are combined and treated as one sample.
DOI: 10.5061/dryad.442dv/4
title: Representative Operational Taxonomic Unit (OTU) Sequences

description: The sequences used as representatives for the different operational taxonomic unit (OTU) clusters. These sequences are the most abundant sequences found within the OTU cluster. These sequences were used for taxonomic assignment and sequence alignment as stated in the manuscript. Further detail can be found in the method section of the manuscript.
DOI: 10.5061/dryad.4qc06/1
title: data

description: The resource populations were established in Ulgai, Xilingole League, Inner Mongolia of China. All the young Simmental beef cattle were born between 2008 and 2013. After weaning, Simmental cattle were moved to Beijing Jinweifuren cattle farm for fattening and put under the same feeding and management conditions. Each animal was measured for growth and developmental traits on time until its slaughter when they were 18 to 24 months of age. Live weight was measured after 24 hours of fasting. During the period of slaughter, carcass traits and meat quality traits were measured according to the Institutional Meat Purchase Specification for fresh beef guidelines.
DOI: 10.5061/dryad.505f6/1
title: Sexual cannibalism and paternal effort

description: Mantids were fed radiolabeled amino acids and allowed to mate. Females of one treatment group cannibalized their mate and females of the other treatment group did not. We measured transfer of radioisotope from male to female and into female reproduction.
DOI: 10.5061/dryad.5865f/1
title: DRYAD ISRAEL + COLORADO distn of paternity outcomes

description: This file contains the paternity outcomes associated with the experimental manipulation of phenotype in two different study locations: Israel and Colorado, USA
DOI: 10.5061/dryad.58sn8/1
title: Uroctonus mtDNA data set

description: Nexus file with aligned CO1 sequences generated from 80 samples. See ReadMe file to match sample names with species and locality.
DOI: 10.5061/dryad.58sn8/2
title: Uroctonus RAD loci data set

description: Nexus file with concatenated RAD loci sequences generated from 191 samples. See ReadMe file to match sample names with species and locality.
DOI: 10.5061/dryad.5dk66/1
title: Sampling data of wild bees and hoverflies in Transylvania

description: Metadata of the dataset used by the following paper accepted in Plos One in March 2016 (Ref. No: PONE-D-15-36138R1). These pollinator data were sampled by transect walk method in Transylvanian arable fields and grasslands in 2012, in a case study financed by the "Lendület" program of the Hungarian Academy of Sciences. Guideline for abbreviations used in the name of variables is provided in the file.
DOI: 10.5061/dryad.5dk66/2
title: Species list of wild bees

description: Species list of wild bees with their abundance (number of individuals) in arable fields and grasslands, lecty category and conservation interest in the studied arable fields and grasslands in Transylvania, Romania. IUCN European Red bee list categories are presented at geographical Europe scale (EN – Endangered; VU – Vulnerable; NT – Near Threatened; LC – Least Concern; DD – Data Deficient).
DOI: 10.5061/dryad.5dk66/3
title: Species list of hoverflies

description: Species list of hoverflies with their abundance (number of individuals) in the studied arable fields and semi-natural grasslands in Transylvania, Romania.
DOI: 10.5061/dryad.5dk66/4
title: Google Earth map of the studied arable fields and grasslands

description: Sites were assigned in the vicinity of 19 villages in the Transylvanian Basin, Romania. Sites are named by the first three letters of the closest village, A (arable) or P (grassland) indicates the land use type, plus H (heterogeneity) and W (woody vegetation cover) values in a 3 value range. Heterogeneity was defined as the standard deviation of the 2.5m panchromatic Spot picture, stratified in quantiles: H1 – belonging to lower third (low heterogeneity), H2 – middle third, H3 – upper third. Woody vegetation cover represented the proportion of woody vegetation (shrubs and trees) in a 1 ha circle based on classified 10m SPOT 5 data: W1: 0 to 5 % woody vegetation cover; W2: 5 to 15 % of woody vegetation; W3: 15 to 50 % of woody vegetation (1 – low, 2 – middle, 3 – high).