cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c54q81
title: MassIVE Reanalysis RMSV000000290.2 - EGDe-Qvalue sparse : Quantification and differential abundance analysis by MSstats
title: Proteomics experiment on Listeria monocytogenes strains EGD-e was performed in biological triplicates (control, high osmolarity, low pH, bile), except for EGD-e bile, where we could only quantify duplicates. All Listeria data sets data were analyzed using Spectronaut v12 (Biognosys) using standard settings (dynamic peak detection, automatic precision nonlinear iRT calibration, interference correction, and cross run normalization). Results were filtered for a qvalue of 0.01 on the peptide level. Peptides for protein group quantitation were selected using Qvalue sparse (all observations that pass the qvalue threshold of 0.01 at least once are considered, no NAs in data matrix) without imputation. MSstats v3.12 was used for differential abundance analysis.
DOI: 10.25345/c55w2s
title: MassIVE MSV000083230 - GNPS_GF vs. SPF Mouse Duodenum
title: Untargeted metabolomics data for 3D molecular cartography of mouse duodenum
DOI: 10.25345/c59k6f
title: MassIVE MSV000083229 - The Gag Protein PEG10 Binds to RNA and Regulates Trophoblast Stem Cell Lineage Specification
title: Peg10 (paternally expressed gene 10) is an imprinted gene that is essential for placental development (1).  It is thought to derive from a Ty3-gyspy LTR (long terminal repeat) retrotransposon and retains Gag and Pol-like domains (2).  Here we show that the Gag domain of PEG10 can promote vesicle budding similar to the HIV p24 Gag protein.  Expressed in a subset of mouse endocrine organs in addition to the placenta, PEG10 was identified as a substrate of the deubiquitinating enzyme USP9X.  Consistent with PEG10 having a critical role in placental development, PEG10-deficient trophoblast stem cells (TSCs) exhibited impaired differentiation into placental lineages.  PEG10 expressed in wild-type, differentiating TSCs was bound to many cellular RNAs including Hbegf (Heparin-binding EGF-like growth factor), which is known to play an important role in placentation (3).  Expression of Hbegf was reduced in PEG10-deficient TSCs suggesting that PEG10 might bind to and stabilize RNAs that are critical for normal placental development.
DOI: 10.25345/c5d73s
title: MassIVE Reanalysis RMSV000000289.1 - original PSM table in the publication + MSstatsTMT
title: Reanalysis for statistical analysis, with published PSM table and by MSstatsTMT
DOI: 10.25345/c5gx6f
title: MassIVE Reanalysis RMSV000000292.4 - MaxQuant reanalysis with id+quant mzTab
title: Reanalysis attachment with id+quant mzTab files. Please note that in order to view the analyte abundances in the mzTab file you will need to download the file by (1) clicking the "FTP Download" button on the right, (2) opening the "result" folder and (3) saving the mzTab file. Alternatively you can also download the same mzTab file by (a) clicking on the "Browse Results" button on the right, (b) clicking "Download" tab at the top of the table and (c) clicking the "Download" button in the popup panel (the mzTab file will be in the "result" folder inside the zip file).
DOI: 10.25345/c5j60j
title: MassIVE MSV000083235 - Cho et al. 2018
title: raw mass spec data files for the manuscript - Cho et al. 2018
DOI: 10.25345/c5mq8c
title: MassIVE Reanalysis RMSV000000292.3 - MaxQuant msms.txt Conversion for MSV000084933
title: Conversion of the original MaxQuant msms.txt to mzTab
DOI: 10.25345/c5nw24
title: MassIVE MSV000083234 - Cho et al. 2019
title: Raw mass spec data files for the manuscript authored by Cho et al.
DOI: 10.25345/c5rf16
title: MassIVE Reanalysis RMSV000000292.1 - Quantification by MaxQuant + DA analysis by MSstats
title: Quantification by MaxQuant v1.5.6.5 + DA analysis by MSstats v3.18.4
DOI: 10.25345/c5sp5f
title: MassIVE MSV000083233 - Profiling protein expression levels and genetically variant peptides in human hair from different body sites
title: Proteins of the human hair shaft contain a wealth of information about the coding regions of the persons genome from whom the hair is derived. Commonly found at crime scenes, hair shafts may thus provide useful forensic evidence if the information they contain can be exploited. Present experiments show that hair shafts from four different anatomic sites are similarly useful in distinguishing individuals by protein profiling. However, the results demonstrated that protein profiles were dependent on anatomic site, indicating that a proper comparison requires matching the sites of origin. The differences in profile offer the prospect of determining the site of origin of hair by comparison with profiles of shafts from other anatomic sites. By contrast, the genetically variant peptides detected in the protein digests, which map to non-synonymous single nucleotide polymorphisms in subject DNA, were detectable regardless of the anatomic origin of the hair shafts. The resulting profiles of genetically variant peptides were more dependent on a subjects genotype than on the anatomic origin of the hair shaft. Individual identification therefore can be based on genetically variant peptide profiles regardless of body location. This study demonstrates the utility of proteomic analysis for increasing the forensic value of hair shaft evidence.
DOI: 10.25345/c5w72r
title: MassIVE Reanalysis RMSV000000291.2 - ScottA-Qvalue sparse : Quantification and differential abundance analysis by MSstats
title: Proteomics experiment on Listeria monocytogenes strains ScottA was performed in biological triplicates (control, high osmolarity, low pH, bile), except for EGD-e bile, where we could only quantify duplicates. All Listeria data sets data were analyzed using Spectronaut v12 (Biognosys) using standard settings (dynamic peak detection, automatic precision nonlinear iRT calibration, interference correction, and cross run normalization). Results were filtered for a qvalue of 0.01 on the peptide level. Peptides for protein group quantitation were selected using Qvalue sparse (all observations that pass the qvalue threshold of 0.01 at least once are considered, no NAs in data matrix) without imputation. MSstats v3.12 was used for differential abundance analysis.
DOI: 10.25345/c5xc7b
title: MassIVE MSV000083232 - PTCD1 is required for mitochondrial oxidative-phosphorylation: possible genetic association with Alzheimer's disease
title: Besides amyloid-beta plaques and tau tangles, mitochondrial dysfunction is implicated in the pathology of Alzheimer's disease (AD). Neurons heavily rely on mitochondrial function, and deficits in brain energy metabolism are detected early in AD; however, direct human genetic evidence for mitochondrial involvement in AD pathogenesis remains scarce.
We performed whole exome sequencing of AD cases versus controls and discovered that a coding mutation in the gene pentatricopeptide repeat containing protein (PTCD1) is enriched in patients. We show here that PTCD1 is required for normal mitochondrial rRNA levels, proper assembly of the mitochondrial ribosome and hence for mitochondrial translation and assembly of the electron transport chain. Loss of PTCD1 function impairs oxidative phosphorylation and forces cells to rely on glycolysis for energy production. Cells expressing the AD-linked variant of PTCD1 fail to sustain energy production under increased metabolic stress. In neurons, reduced PTCD1 expression leads to lower ATP levels and impacts spontaneous synaptic activity. Thus, our study uncovers a possible link between a protein required for mitochondrial function, and energy metabolism and AD risk.
DOI: 10.25345/c5015r
title: MassIVE Reanalysis RMSV000000294.1 - Quantification by MaxQuant + differential abundance analysis by MSstats
title: Quantification by MaxQuant v1.5.6.5 + DA analysis by MSstats v3.18.4
DOI: 10.25345/c53q8q
title: MassIVE Reanalysis RMSV000000293.4 - MaxQuant reanalysis with id+quant mzTab
title: Reanalysis attachment with id+quant mzTab files. Please note that in order to view the analyte abundances in the mzTab file you will need to download the file by (1) clicking the "FTP Download" button on the right, (2) opening the "result" folder and (3) saving the mzTab file. Alternatively you can also download the same mzTab file by (a) clicking on the "Browse Results" button on the right, (b) clicking "Download" tab at the top of the table and (c) clicking the "Download" button in the popup panel (the mzTab file will be in the "result" folder inside the zip file).
DOI: 10.25345/c56j0w
title: MassIVE Reanalysis RMSV000000296.1 - Quantification by MaxQuant-canonical isoform search + DA analysis by MSstats
title: Quantification by MaxQuant v1.5.6.5 - canonical isoform search + DA analysis by MSstats v3.18.4
DOI: 10.25345/c57j1k
title: MassIVE Reanalysis RMSV000000293.3 - MaxQuant msms.txt to mzTab for MSV000081695
title: Conversion of the original MaxQuant msms.txt to mzTab
DOI: 10.25345/c5c723
title: MassIVE Reanalysis RMSV000000293.1 - Quantification by MaxQuant + stat analysis by MSstats
title: Quantification by MaxQuant v1.5.6.5 + stat analysis by MSstats v3.18.4. Only 1 sample per condition is available. Therefore differential abundance analysis was not performed. Sample quantification was performed by MSstats.
DOI: 10.25345/c5g153
title: MassIVE Reanalysis RMSV000000295.3 - CCMS Conversion MaxQuant msms.txt to mzTab
title: Conversion of the original MaxQuant msms.txt to mzTab
DOI: 10.25345/c5kq82
title: MassIVE Reanalysis RMSV000000295.1 - Quantification by MaxQuant + differential abundance analysis by MSstats
title: Quantification by MaxQuant v1.5.6.5 + DA analysis by MSstats v3.18.4
DOI: 10.25345/c5qj0j
title: MassIVE Reanalysis RMSV000000294.4 - MaxQuant reanalysis with id+quant mzTab
title: Reanalysis attachment with id+quant mzTab files. Please note that in order to view the analyte abundances in the mzTab file you will need to download the file by (1) clicking the "FTP Download" button on the right, (2) opening the "result" folder and (3) saving the mzTab file. Alternatively you can also download the same mzTab file by (a) clicking on the "Browse Results" button on the right, (b) clicking "Download" tab at the top of the table and (c) clicking the "Download" button in the popup panel (the mzTab file will be in the "result" folder inside the zip file).
DOI: 10.25345/c5v73t
title: MassIVE Reanalysis RMSV000000294.3 - MaxQuant msms.txt to mzTab for MSV000084934
title: Conversion of the original MaxQuant msms.txt to mzTab
DOI: 10.5285/a119b841548c4948b2711f2ddbbe2e27
title: Spectral analysis of voltage data taken from the Canadian Riometer Array

description: This dataset contains voltage data taken from the Canadian Riometer Array (CRA). The provided tables and datasets can be used to determine if the voltage time series of CRA riometers have characteristic spectral features. In addition, datasets are provided which have been collected from the Solar Wind Electron Proton Monitor (SWEPAM) and Magnetic Field Experiment (MAG) instruments aboard the Atmospheric Composition Explorer (ACE).
DOI: 10.25345/c51t7r
title: MassIVE Reanalysis RMSV000000299.1 - 2 h gradient -Testis Sample set - MS1 analysis
title: 2 h gradient - Testis Sample set - MS1 analysis (method by Huang et al 2020 MCP : DOI: 10.1074/mcp.RA119.001705)
DOI: 10.25345/c52q8d
title: MassIVE Reanalysis RMSV000000296.2 - Quantification by MaxQuant-reference proteome + DA analysis by MSstats
title: Quantification by MaxQuant v1.5.6.5 - reference proteome + DA analysis by MSstats v3.18.4
DOI: 10.25345/c59b2h
title: MassIVE Reanalysis RMSV000000298.3 - MaxQuant msms.txt conversion to mzTab for MSV000084940
title: Conversion of the original MaxQuant msms.txt to mzTab
DOI: 10.25345/c5b735
title: MassIVE Reanalysis RMSV000000295.4 - MaxQuant reanalysis with id+quant mzTab
title: Reanalysis attachment with id+quant mzTab files. Please note that in order to view the analyte abundances in the mzTab file you will need to download the file by (1) clicking the "FTP Download" button on the right, (2) opening the "result" folder and (3) saving the mzTab file. Alternatively you can also download the same mzTab file by (a) clicking on the "Browse Results" button on the right, (b) clicking "Download" tab at the top of the table and (c) clicking the "Download" button in the popup panel (the mzTab file will be in the "result" folder inside the zip file).
DOI: 10.25345/c5f15s
title: MassIVE Reanalysis RMSV000000298.1 - Quantification by MaxQuant + differential abundance analysis by MSstats
title: Quantification by MaxQuant v1.5.6.5 + DA analysis by MSstats v3.18.4
DOI: 10.25345/c5jq8r
title: MassIVE Reanalysis RMSV000000297.4 - MaxQuant reanalysis with id+quant mzTab
title: Reanalysis attachment with id+quant mzTab files. Please note that in order to view the analyte abundances in the mzTab file you will need to download the file by (1) clicking the "FTP Download" button on the right, (2) opening the "result" folder and (3) saving the mzTab file. Alternatively you can also download the same mzTab file by (a) clicking on the "Browse Results" button on the right, (b) clicking "Download" tab at the top of the table and (c) clicking the "Download" button in the popup panel (the mzTab file will be in the "result" folder inside the zip file).
DOI: 10.25345/c5pj07
title: MassIVE Reanalysis RMSV000000297.3 - MaxQuant msms.txt to mzTab for MSV000084939
title: Conversion of the original MaxQuant msms.txt to mzTab
DOI: 10.25345/c5t73h
title: MassIVE Reanalysis RMSV000000297.1 - Quantification by MaxQuant + differential abundance analysis by MSstats
title: Quantification by MaxQuant v1.5.6.5 + DA analysis by MSstats v3.18.4
DOI: 10.25345/c5z142
title: MassIVE Reanalysis RMSV000000296.4 - Reanalysis of MSV000084938 - MassIVE.quant MSGF+ Identifications
title: MassIVE.quant Identifications from Reanalysis of MSV000084938 - MassIVE.quant MSGF+ (Reanalysis RMSV000000296)
DOI: 10.25345/c50t7f
title: MassIVE Reanalysis RMSV000000301.3 - 6 h gradient -Testis Sample set - MS1 MS2 analysis
title: 6 h gradient - Testis Sample set - MS1 MS2 analysis (method by Huang et al 2020 MCP : DOI: 10.1074/mcp.RA119.001705)
DOI: 10.25345/c55j0k
title: MassIVE Reanalysis RMSV000000298.4 - MaxQuant reanalysis with id+quant mzTab
title: Reanalysis attachment with id+quant mzTab files. Please note that in order to view the analyte abundances in the mzTab file you will need to download the file by (1) clicking the "FTP Download" button on the right, (2) opening the "result" folder and (3) saving the mzTab file. Alternatively you can also download the same mzTab file by (a) clicking on the "Browse Results" button on the right, (b) clicking "Download" tab at the top of the table and (c) clicking the "Download" button in the popup panel (the mzTab file will be in the "result" folder inside the zip file).
DOI: 10.25345/c58b26
title: MassIVE Reanalysis RMSV000000301.1 - 6 h gradient -Testis Sample set - MS1 analysis
title: 6 h gradient - Testis Sample set - MS1 analysis (method by Huang et al 2020 MCP : DOI: 10.1074/mcp.RA119.001705)
DOI: 10.25345/c5d15g
title: MassIVE Reanalysis RMSV000000300.3 - 4 h gradient -Testis Sample set - MS1 MS2 analysis
title: 4 h gradient - Testis Sample set - MS1 MS2 analysis (method by Huang et al 2020 MCP : DOI: 10.1074/mcp.RA119.001705)
DOI: 10.25345/c5ht73
title: MassIVE Reanalysis RMSV000000300.2 - 4 h gradient -Testis Sample set - MS2 analysis
title: 4 h gradient - Testis Sample set - MS2 analysis (method by Huang et al 2020 MCP : DOI: 10.1074/mcp.RA119.001705)
DOI: 10.25345/c5nh90
title: MassIVE Reanalysis RMSV000000300.1 - 4 h gradient -Testis Sample set - MS1 analysis
title: 4 h gradient - Testis Sample set - MS1 analysis (method by Huang et al 2020 MCP : DOI: 10.1074/mcp.RA119.001705)
DOI: 10.25345/c5sb2v
title: MassIVE Reanalysis RMSV000000299.3 - 2 h gradient -Testis Sample set - MS1 MS2 analysis
title: 2 h gradient - Testis Sample set - MS1 MS2 analysis (method by Huang et al 2020 MCP : DOI: 10.1074/mcp.RA119.001705)
DOI: 10.25345/c5x154
title: MassIVE Reanalysis RMSV000000299.2 - 2 h gradient -Testis Sample set - MS2 analysis
title: 2 h gradient - Testis Sample set - MS2 analysis (method by Huang et al 2020 MCP : DOI: 10.1074/mcp.RA119.001705)
DOI: 10.25345/c53m92
title: MassIVE Reanalysis RMSV000000306.1 - CoronaMassKB: CCMS MS-GF+ reanalysis of MSV000080026 Calu-3 cell proteome response to H1N1 virus
title: CoronaMassKB: open-data reanalysis of mass spectrometry data. CCMS MS-GF+ reanalysis of MSV000080026 Calu-3 cell proteome response to H1N1 virus
DOI: 10.25345/c54j08
title: MassIVE Reanalysis RMSV000000301.2 - 6 h gradient -Testis Sample set - MS2 analysis
title: 6 h gradient - Testis Sample set - MS2 analysis (method by Huang et al 2020 MCP : DOI: 10.1074/mcp.RA119.001705)
DOI: 10.25345/c57b1h
title: MassIVE Reanalysis RMSV000000305.1 - Quantification-training-validation-testing by MSstats
title: attach the normalized quantification for training and validation sets. Testing is performed by MSstats for the training set.
DOI: 10.25345/c5c44t
title: MassIVE Reanalysis RMSV000000304.1 - Differential abundance analysis by linear model
title: Protein-level quantification data is available. To identify the differentially abundant proteins, linear model was used to estimate group variance. All pairwise comparisons were performed. BH method was used to adjusting the p-values.
DOI: 10.25345/c5gt7s
title: MassIVE Reanalysis RMSV000000303.1 - Differential abundance analysis by linear model
title: Protein-level quantification data is available. To identify the differentially abundant proteins, linear model was used to estimate group variance. All pairwise comparisons were performed. BH method was used to adjusting the p-values.
DOI: 10.25345/c5mj0m
title: MassIVE Reanalysis RMSV000000302.4 - MaxQuant reanalysis with id+quant mzTab
title: Reanalysis attachment with id+quant mzTab files. Please note that in order to view the analyte abundances in the mzTab file you will need to download the file by (1) clicking the "FTP Download" button on the right, (2) opening the "result" folder and (3) saving the mzTab file. Alternatively you can also download the same mzTab file by (a) clicking on the "Browse Results" button on the right, (b) clicking "Download" tab at the top of the table and (c) clicking the "Download" button in the popup panel (the mzTab file will be in the "result" folder inside the zip file).
DOI: 10.25345/c5rb2j
title: MassIVE Reanalysis RMSV000000302.3 - MaxQuant msms.txt PSMs to mzTab
title: Conversion of the original MaxQuant msms.txt to mzTab
DOI: 10.25345/c5v445
title: MassIVE Reanalysis RMSV000000308.1 - MassIVE/CCMS Maestro+MSstats reanalysis of MSV000085096 / PXD017710 Proteome and Translatome of SARS-CoV-2 infected cells
title: MassIVE/CCMS Maestro+MSstats reanalysis of MSV000085096 / PXD017710 Proteome and Translatome of SARS-CoV-2 infected cells
DOI: 10.25345/c5w15t
title: MassIVE Reanalysis RMSV000000302.1 - Quantification by MaxQuant + stat analysis by MSstats
title: Quantification by MaxQuant v1.5.6.5 + differential abundance analysis by MSstats v3.18.4.
DOI: 10.25345/c5zt74
title: MassIVE Reanalysis RMSV000000307.1 - CoronaMassKB: MassIVE/CCMS MSGF+ reanalysis of MSV000079701 Primary human fibroblasts proteome response to an icMERS coronavirus
title: CoronaMassKB: open-data reanalysis of mass spectrometry data. MassIVE/CCMS MSGF+ reanalysis of MSV000079701 Primary human fibroblasts proteome response to an icMERS coronavirus
DOI: 10.25345/c52m9r
title: MassIVE Reanalysis RMSV000000313.1 - CoronaMassKB hackathon: MassIVE/CCMS Maestro reanalysis of MSV000085349 / PXD018581 Proteomics of SARS-CoV and SARS-CoV-2 infected cells
title: CoronaMassKB hackathon: Early-access community reanalysis of mass spectrometry data. MassIVE/CCMS Maestro reanalysis of MSV000085349 / PXD018581 Proteomics of SARS-CoV and SARS-CoV-2 infected cells
DOI: 10.25345/c56b2k
title: MassIVE Reanalysis RMSV000000311.2 - CoronaMassKB hackathon: MassIVE/CCMS MSGF+ reanalysis of MSV000085347/ PXD018760 TARGETED PROTEOMICS FOR THE DETECTION OF SARS-COV-2 PROTEINS
title: CoronaMassKB hackathon: Early-access community reanalysis of mass spectrometry data. MassIVE/CCMS MSGF+ reanalysis of MSV000085347/ PXD018760 TARGETED PROTEOMICS FOR THE DETECTION OF SARS-COV-2 PROTEINS
DOI: 10.25345/c5b44h
title: MassIVE Reanalysis RMSV000000311.1 - CoronaMassKB Hackathon: MassIVE/CCMS Maestro reanalysis of MSV000085347 / PXD018760 TARGETED PROTEOMICS FOR THE DETECTION OF SARS-COV-2 PROTEINS
title: CoronaMassKB Hackathon: early-access community reanalysis of mass spectrometry data. MassIVE/CCMS Maestro reanalysis of MSV000085347 / PXD018760 TARGETED PROTEOMICS FOR THE DETECTION OF SARS-COV-2 PROTEINS
DOI: 10.25345/c5ft7g
title: MassIVE Reanalysis RMSV000000310.1 - update of the complete metadata in ReDU format
title: Updata of the complete metadata in the ReDU format.
DOI: 10.25345/c5km9d
title: MassIVE Reanalysis RMSV000000309.1 - CoronaMassKB: MassIVE/CCMS MS-GF+ reanalysis of MSV000085144/PXD018117, A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Purposing
title: CoronaMassKB: open-data reanalysis of mass spectrometry data. MassIVE/CCMS MS-GF+ reanalysis of MSV000085144/PXD018117 A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Purposing
DOI: 10.25345/c5qb1v
title: MassIVE Reanalysis RMSV000000308.2 - CoronaMassKB: MassIVE/CCMS Maestro+MSstats reanalysis of MSV000085096 / PXD017710 Proteome and Translatome of SARS-CoV-2 infected cells
title: MassIVE/CCMS Maestro+MSstats reanalysis of MSV000085096 / PXD017710 Proteome and Translatome of SARS-CoV-2 infected cells, including cluster files
DOI: 10.25345/c5t43g
title: MassIVE Reanalysis RMSV000000313.3 - CoronaMassKB hackathon: MassIVE/CCMS MSGF+ reanalysis of MSV000085349 / PXD018581 Proteomics of SARS-CoV and SARS-CoV-2 infected cells, phosphorylation
title: CoronaMassKB hackathon: Early-access community reanalysis of mass spectrometry data. MassIVE/CCMS MSGF+ reanalysis of MSV000085349 / PXD018581 Proteomics of SARS-CoV and SARS-CoV-2 infected cells, phosphorylation
DOI: 10.25345/c5xt86
title: MassIVE Reanalysis RMSV000000313.2 - CoronaMassKB hackathon: MassIVE/CCMS MSGF+ reanalysis of MSV000085349 / PXD018581 Proteomics of SARS-CoV and SARS-CoV-2 infected cells
title: CoronaMassKB hackathon: Early-access community reanalysis of mass spectrometry data. MassIVE/CCMS MSGF+ reanalysis of MSV000085349 / PXD018581 Proteomics of SARS-CoV and SARS-CoV-2 infected cells
DOI: 10.25345/c51m9f
title: MassIVE Reanalysis RMSV000000315.2 - CoronaMassKB Hackathon: MassIVE/CCMS MSGF+ reanalysis of MSV000085096 / PXD017710 Proteome and Translatome of SARS-CoV-2 infected cells
title: CoronaMassKB Hackathon: Early-access community reanalysis of mass spectrometry data. MassIVE/CCMS MSGF+ reanalysis of MSV000085096 / PXD017710 Proteome and Translatome of SARS-CoV-2 infected cells
DOI: 10.25345/c55f1x
title: MassIVE Reanalysis RMSV000000315.1 - CoronaMassKB Hackathon: MassIVE/CCMS Maestro reanalysis of MSV000085096 / PXD017710 Proteome and Translatome of SARS-CoV-2 infected cells
title: CoronaMassKB Hackathon: Early-access community reanalysis of mass spectrometry data. MassIVE/CCMS Maestro reanalysis of MSV000085096 / PXD017710 Proteome and Translatome of SARS-CoV-2 infected cells
DOI: 10.25345/c5943t
title: MassIVE Reanalysis RMSV000000314.4 - CoronaMassKB hackathon: MassIVE/CCMS MSGF+ reanalysis of MSV000085205 / PXD018241 Characterisation of the transcriptome and proteome of SARS-CoV-2 using direct RNA sequencing and tandem mass spectrometry reveals evidence for a cell passage induced in-frame deletion in the spike glycoprotein that removes the furin-like cleavage site.
title: CoronaMassKB hackathon: Early-access community reanalysis of mass spectrometry data. MassIVE/CCMS MSGF+ reanalysis of MSV000085205 / PXD018241 Characterisation of the transcriptome and proteome of SARS-CoV-2 using direct RNA sequencing and tandem mass spectrometry reveals evidence for a cell passage induced in-frame deletion in the spike glycoprotein that removes the furin-like cleavage site.