cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.77q9r
title: Data from: Photos provide information on age, but not kinship, of Andean bear

description: Using photos of captive Andean bears of known age and pedigree, and photos
 of wild Andean bear cubs &lt;6 months old, we evaluated the degree to
 which visual information may be used to estimate bears’ ages and assess
 their kinship. We demonstrate that the ages of Andean bear cubs ≤6 months
 old may be estimated from their size relative to their mothers with an
 average error of &lt;0.01 ± 13.2 days (SD; n = 14), and that ages of
 adults ≥10 years old may be estimated from the proportion of their nose
 that is pink with an average error of &lt;0.01 ± 3.5 years (n = 41).
 We also show that similarity among the bears’ natural markings, as
 perceived by humans, is not associated with pedigree kinship among the
 bears (R2 &lt; 0.001, N = 1,043, p = 0.499). Thus, researchers may use
 photos of wild Andean bears to estimate the ages of young cubs and older
 adults, but not to infer their kinship. Given that camera trap photos are
 one of the most readily available sources of information on large cryptic
 mammals, we suggest that similar methods be tested for use in other poorly
 understood species.
description: Visual estimates of the
 sizes of Andean bear cubs relative to their mothersThis csv file contains
 data from photos of Andean bear cubs in captivity and in the wild (Cerro
 Venado, Lambayeque, Peru).VanHornetal15_data1_CubRelativeSize.csvThe nose color of known-age captive Andean bearsThis csv file contains data from photos of captive Andean bears that were used to build and test a method for estimating the bears' ages from their nose color.VanHornetal15_data2_NoseColor.csvPerceived similarity of the facial markings of captive Andean bearsThis csv file contains data from an online survey in which participants were asked to rate the perceived similarity of the facial markings of the two captive bears shown in sequential pairs of photos.VanHornetal15_data3_KinshipSimilarity.csv
DOI: 10.5281/zenodo.18379541
title: Oncodevelopmental plasticity of the skeleton in myeloid neoplasms

description: scRNA datasets (seurat objects) used in the manuscript.
DOI: 10.5061/dryad.2t41r64
title: Data from: Hurricane-induced selection on the morphology of an island lizard

description: Hurricanes are catastrophically destructive. Beyond their toll on human
 life and livelihoods, hurricanes have massive and often long-lasting
 effects on ecological systems. Despite many examples of mass mortality
 events following hurricanes, hurricane-induced natural selection has never
 been demonstrated. Immediately after we finished a survey of Anolis
 scriptus, a common, small-bodied lizard found throughout the Turks and
 Caicos archipelago, our study populations were battered by Hurricanes Irma
 and Maria. Shortly thereafter, we revisited the populations to determine
 whether morphological traits related to clinging capacity had shifted in
 the intervening six weeks and found that surviving lizards differed in
 body size, relative limb length and toepad size from those present before
 the storm. Our serendipitous study, the first to employ an immediate
 before-after comparison to test this question, demonstrates that
 hurricanes can induce phenotypic change in a population, and strongly
 implicates natural selection as the cause. In the decades ahead, as
 extreme climate events are predicted to become more intense and prevalent,
 our understanding of evolutionary dynamics needs to incorporate the impact
 of these potentially severe selective episodes.
description: Anolis scriptus
 morphology and performance from before and after
 hurricanesLizard morphology data
 collected from two visits to Pine Cay and Water Cay in the Turks and
 Caicos Islands. Anolis scriptus lizards were surveyed on both islands four
 days before hurricane Irma and again, six weeks later, after the islands
 had been hit by Hurricanes Irma and Maria. We measured morphology and
 performance and found significant differences in the "before"
 and "after" hurricane lizard population morphology. All linear
 measurements are in MM, surface area measurements are in MM2 and force in
 N. Counts correspond to the number of lamellar scales on the forelimb and
 hind limb toepads.Donihue 2018-01-00672
 Hurricanes Data.csv
DOI: 10.5281/zenodo.18379540
title: Oncodevelopmental plasticity of the skeleton in myeloid neoplasms

description: scRNA datasets (seurat objects) used in the manuscript.
DOI: 10.5061/dryad.t81q9
title: Data from: Male biased sex ratio reduces the fecundity of one of three female morphs in a polymorphic damselfly

description: Females of the damselfly Ischnura graellsii display 3 color morphs, a
 male-like androchrome morph and 2 other morphs, infuscans and aurantiaca,
 which are not male-like. Previous research has suggested that male
 harassment has a negative effect on female fitness in many different
 insect species. Studying how male harassment affects fitness of the
 different female color morphs is key to a better understanding of how
 these morphs are maintained in natural populations. This study evaluated
 the response of female morphs of I. graellsii to contrasting sex ratios
 under controlled laboratory conditions. In our experiments, male
 abundance, through increased harassment, affected differentially the
 fecundity of females of the 3 color morphs. A male biased (3:1) sex ratio
 drastically decreased the average fecundity of infuscans females but had
 no effect on androchrome and aurantiaca females. Taking into account our
 results and previous studies that indicate that males prefer infuscans
 females, we propose a mechanism for the maintenance of this polymorphism.
 In this scenario, within-generation fluctuations in male abundance produce
 2 regimes: One in which male abundance disfavors infuscans females by
 decreasing their fecundity and other in which a low male abundance results
 in androchromes that do not mate because of their low appeal to males. By
 studying a simple population genetics model, we found that the mechanism
 that we propose may contribute to maintain a stable female-limited
 polymorphism under a wide range of parameter combinations.
description: Fecundity and behaviors
 in Ischnura graellsiiThis data file contains
 data on fecundity (sheet 1), sexual and non-sexual behaviors (sheet 2) and
 mating duration (sheet 3) of female damselflies (Ischnura graellsii). The
 data were collected in laboratory conditions for damselflies of three
 color morphs (infuscans, aurantiaca and androchromes) under two distinct
 male:female ratios (1:1 and 3:1).data
 polymorphism.xlsx
DOI: 10.5061/dryad.mr44c
title: Data from: The evolution of cooperation by negotiation in a noisy world

description: Cooperative interactions among individuals are ubiquitous despite the
 possibility of exploitation by selfish free-riders. One mechanism that may
 promote cooperation is “negotiation”: individuals altering their behaviour
 in response to the behaviour of others. Negotiating individuals decide
 their actions through a recursive process of reciprocal observation,
 thereby reducing the possibility of free-riding. Evolutionary games with
 response rules have shown that infinitely many forms of the rule can be
 evolutionarily stable simultaneously, unless there is variation in
 individual quality. This potentially restricts the conditions under which
 negotiation could maintain cooperation. Organisms interact with one
 another in a noisy world in which cooperative effort and the assessment of
 effort may be subject to error. Here, we show that such noise can make the
 number of evolutionarily stable rules finite, even without quality
 variation, and so noise could help maintain cooperative behaviour. We show
 that the curvature of the benefit function is the key factor determining
 whether individuals invest more or less as their partner's investment
 increases; investing less when the benefit to investment has diminishing
 returns. If the benefits of low investment are very small then behavioural
 flexibility tends to promote cooperation, because negotiation enables
 co-operators to reach large benefits. Under some conditions this leads to
 a repeating cycle in which cooperative behaviour rises and falls over
 time, which may explain between-population differences in cooperative
 behaviour. In other conditions negotiation leads to extremely high levels
 of cooperative behaviour, suggesting that behavioural flexibility could
 facilitate the evolution of eusociality in the absence of high
 relatedness.
description: SourceCode_KI_etal_2016Source code for the analysis in "The evolution of cooperation by negotiation in a noisy world".
DOI: 10.5061/dryad.pj56m
title: Data from: Genetic differentiation of western capercaillie in the Carpathian Mountains reveal the importance of post glacial expansions and habitat connectivity in understanding the present day European distribution

description: Population structure and barriers to gene flow are important components
 for understanding the evolutionary history of a species. Here we study
 population structure and differentiation in the western capercaillie
 (Aves: Phasianidae) along the Carpathian Mountains. Further, we compared
 the levels of population differentiation among capercaillie from the
 Carpathian Mountains, Balkans (Bulgaria) and the boreal forest (Russia and
 Sweden) in order to reveal past and current processes which may influence
 population structure. Tissue samples, non-invasive faeces and feathers and
 toe pads from museum specimens were used for genetic analyses of
 mitochondrial (mtDNA) sequences and allelic variation at nine nuclear DNA
 (nDNA) microsatellite loci. Analyses of mtDNA sequences revealed a
 southern subclade within the northern clade. Within the northern clade,
 microsatellite data distinguished two groups: (1) Western Carpathian
 populations; and (2) Eastern Carpathian and boreal forest populations.
 Bulgarian populations constituted a third cluster corresponding to the
 southern phylogenetic subclade. The Western Carpathian populations showed
 a heterozygote deficiency. The analyses indicate that the abundant Eastern
 Carpathian populations share alleles with populations from the boreal
 forest suggesting a common origin of these populations since the last
 glacial period. On the other hand, the Western Carpathian populations have
 been isolated over a long period with only a few migrants from the east,
 thereby becoming differentiated from the eastern and northern populations.
 The southern populations have been isolated from the northern populations
 since the last glacial maximum. The molecular analyses did not support the
 currently recognised taxonomy at the subspecies level.
description: urogallus microsatellite
 genotypesurogallus.csv
DOI: 10.15468/dl.5cyhsj
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Castanopsis concinna"
 ]
}

 The dataset includes 24 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001244-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.44dr859
title: Data from: Host dispersal responses to resource supplementation determine pathogen spread in wildlife metapopulations

description: Many wildlife species occupy landscapes that vary in the distribution,
 abundance, and quality of food resources. Increasingly, urbanized and
 agricultural habitats provide supplemental food resources that can have
 profound consequences for host distributions, movement patterns, and
 pathogen exposure. Understanding how host and pathogen dispersal across
 landscapes is affected by the spatial extent of food-supplemented habitats
 is therefore important for predicting the consequences for pathogen spread
 and impacts on host occupancy. Here we develop a generalizable
 metapopulation model to understand how the relative abundance of
 provisioned habitats across the landscape, and host dispersal responses to
 provisioning and infection, influence patch occupancy by hosts and their
 pathogens. We find that pathogen invasion and landscape-level infection
 prevalence are greatest when provisioning increases patch attractiveness
 and disperser production and when infection has minimal costs on dispersal
 success. Alternatively, if provisioning promotes site fidelity or reduces
 disperser production, increasing the fraction of food-supplemented
 habitats can reduce landscape-scale infection prevalence and minimize
 disease-induced declines in host occupancy. This work highlights the
 importance of considering how resources and infection jointly influence
 host dispersal for predicting how changing resource distributions
 influence the spread of infectious diseases.
description: Becker et al
 2018_AmNat_R codeR code for deriving
 threshold conditions, for numerically solving the differential equations,
 and for recreating key figures.
DOI: 10.5061/dryad.763bh
title: Data from: The ecology of seed dispersal by small rodents: a role for predator and conspecific scents

description: 1. Seed-caching rodents play a key role in the ecology of seed dispersal
 by not only consuming but also dispersing seeds. Rodent foraging behaviour
 is usually framed within optimal models which predict that their decisions
 should maximize food intake and minimize foraging costs. Yet, although
 predation risk and seed pilferage by conspecifics have been envisaged as
 two potential costs, their relevance for seed-caching behaviour and seed
 dispersal has barely been addressed. 2. To test the effect of predation
 and pilferage risk on the patterns of seed predation/dispersal by rodents,
 we performed a field experiment using a tri-trophic-level model
 (plant-mice-carnivore; Quercus spp- Apodemus sylvaticus-Genetta genetta,)
 and the scents of the predator and conspecifics as direct cues. The
 behaviour of mice was analyzed with video cameras set for continuous
 recording on consecutive nights and we used tagged acorns to assess the
 patterns of acorn predation and dispersal. 3. Our results revealed that
 rodents were able to discriminate between the scents of genet and
 conspecifics and modified their seed dispersal behaviour accordingly. Mice
 spent more time “sniffing” in rodent cages than in genet cages where they
 displayed more “vigilance and freezing” behaviours. In sites with mice
 scents, acorns were dispersed at shorter distances and were less predated.
 Conversely, in sites with genet scents acorn removal was delayed. 4. These
 results show that chemosensory information on predators and conspecifics
 influences the foraging decisions of seed-caching rodents over short
 spatial and temporal scales. This might entail cascading effects on the
 regeneration of plants. In sites where rodents perceive the risk of
 predation, inefficient foraging behaviour may result in less successful
 seed dispersal. Conversely, the detection of conspecific scents may
 increase dispersal efficiency and seedling recruitment. 5. Ultimately, the
 relationships between two distant levels in trophic webs
 (plants-carnivores) appear intricate, since carnivores may affect seed
 dispersal by changing the foraging behaviour of their prey (the seed
 disperser). This indirect relationship should be considered as a new
 dimension of the ecology of seed dispersal by small rodents.
description: Tagged acorns used by
 rodents and foraging behaviourField data obtained from
 tagged acorns and video-camerasSunyer et
 al.rar
DOI: 10.5061/dryad.bp81r
title: Data from: Slow and temperature-mediated pathogen adaptation to a non-specific fungicide in agricultural ecosystem

description: The spread of antimicrobial resistance and global change in air
 temperature represent two major phenomena that are exerting a disastrous
 impact on natural and social issues but investigation of the interaction
 between these phenomena in an evolutionary context is limited. In this
 study, a statistical genetic approach was used to investigate the
 evolution of antimicrobial resistance in agricultural ecosystem and its
 association with local air temperature. We found no resistance to
 mancozeb, a non-specific fungicide widely used in agriculture for more
 than half a century, in 215 Alternaria alternata isolates sampled from
 geographic locations along a climatic gradient and cropping system
 representing diverse ecotypes in China, consistent with low resistance
 risk in many non-specific fungicides. Genetic variance accounts for ~35%
 of phenotypic variation while genotype-environment interaction is
 negligible, suggesting that heritability plays a more important role in
 the evolution of resistance to mancozeb in plant pathogens than phenotypic
 plasticity. We also found that tolerance to mancozeb in agricultural
 ecosystem is under constraining selection and significantly associated
 with local air temperature, possibly resulting from a pleiotropic effect
 of tolerance with thermal and other ecological adaptations. The
 implication of these results for fungicide and other antimicrobial
 management in the context of global warming is discussed.
description: Mancozeb tolerance at
 three concentrations in the 215 isolates of Alternaria alternata collected
 from seven potato fields across China.Mancozeb tolerance at
 three concentrations in the 215 isolates of Alternaria alternata collected
 from seven potato fields across China. Mancozeb tolerance of isolates was
 measured with relative growth rate (RGR) of the isolates in the presence
 of mancozeb to the absence of mancozeb.Mancozeb tolerance (Relative
 Growth Rate) on three
 concentrations.xlsx
DOI: 10.5061/dryad.t838p
title: Data from: Reproductive isolation between phylogeographic lineages scales with divergence

description: Phylogeographic studies frequently reveal multiple morphologically cryptic
 lineages within species. What is not yet clear is whether such lineages
 represent nascent species or evolutionary ephemera. To address this
 question, we compare five contact zones, each of which occurs between
 ecomorphologically cryptic lineages of skinks from the rainforests of the
 Australian Wet Tropics. Although the contacts probably formed concurrently
 in response to Holocene expansion from glacial refugia, we estimate that
 the divergence times (τ) of the lineage pairs range from 3.1 to 11.5 Ma.
 Multi-locus analyses of the contact zones yielded estimates of
 reproductive isolation that are tightly correlated with divergence time
 and, for lineages with older divergence times (τ &gt; 5 Myr),
 substantial. These results show that phylogeographic splits of increasing
 depth represent stages along the speciation continuum, even in the absence
 of overt change in ecologically relevant morphology.
description: dataContains (1) genotypic
 data for each of the five contact zones and (2) data used to estimate
 divergence history for (a) S. basiliscus / S. lewisi in IMa2 and (b) all
 other lineage-pairs in dadi
DOI: 10.5061/dryad.t4g3r
title: Data from: Ghosts of habitats past: environmental carry-over effects drive population dynamics in novel habitat

description: The phenotype of adults can be strongly influenced by the environmental
 conditions experienced during development. Consequently, variation in
 habitat quality across space and through time also leads to differences in
 the phenotypes of adults. This could create carry-over effects where
 differences in the natal habitat quality of colonizers influence
 population dynamics in new habitats. We tested this hypothesis
 experimentally by simulating dispersal of Tribolium castaneum from low or
 high quality natal habitat into new patches of low or high quality
 habitat. Differences in natal habitat quality of colonizers altered
 population growth trajectories and led to carrying capacities that
 differed by up to 85% within a habitat type, indicating that patch
 dynamics are determined by the interaction of past and current habitat
 quality. Interestingly, even after multiple generations, natal habitat of
 colonizers determined differences in adult traits that were related to
 density-dependent population regulation. These changes in adult phenotype
 could at least partially explain why carry-over effects continued to alter
 population dynamics for multiple generations until the end of the
 experiment. These results highlight the importance of variable habitat
 quality and carry-over effects for population dynamics.
description: Ghosts of habitats past
 data
DOI: 10.5061/dryad.7f25j43
title: Data from: How many faces do people know?

description: Over our species history, humans have typically lived in small groups of
 under a hundred individuals. However, our face recognition abilities
 appear to equip us to recognize very many individuals, perhaps thousands.
 Modern society provides access to huge numbers of faces, but no one has
 established how many faces people actually know. Here we describe a method
 for estimating this number. By combining separate measures of recall and
 recognition, we show that people know about 5000 faces on average, and
 that individual differences are large. Our findings offer a possible
 explanation for large variation in identification performance. They also
 provide constraints on understanding the qualitative differences between
 perception of familiar and unfamiliar faces—a distinction that underlies
 all current theories of face recognition.
description: Participant scores and
 projectionsDemographic data, recall
 data, recognition data, and projections.JENKINS_DOWSETT_BURTON_data_expanded.xlsx
DOI: 10.5061/dryad.587ms
title: Data from: Colonization and persistence of urban ant populations as revealed by joint estimation of kinship and population genetic parameters

description: The decrease in biodiversity due to increasing urbanization has been well
 documented, but the processes of colonization and maintenance of wildlife
 populations in urban areas remain poorly understood. We address this issue
 using 462 individuals from 10 urban populations of the ant Formica
 japonica in Kobe City, Japan. We sampled workers regardless of colony
 identity, genotyped them using 6 microsatellite loci, and estimated allele
 frequencies and genotypes of reproductive individuals, together with other
 population genetic parameters, by estimating kinship structure using a
 likelihood method. Estimated genetic diversity and effective size of
 populations were not associated with environmental parameters, suggesting
 that populations are unaffected by urbanization. However, effective
 population sizes were small, and frequent population bottlenecks were
 detected. These results suggest that urban F. japonica populations are
 unstable, and the possibility of frequent extinctions and recolonizations
 in urban habitats. Populations were moderately differentiated without
 isolation by distance, suggesting a strong dispersal ability that enables
 colonization of urban habitats. Dispersal was male biased. Collectively,
 F. japonica was regarded as an urban adapter, which can colonize urban
 habitats by virtue of its preference for open ground and high dispersal
 ability but can persist in urban populations for only a short time,
 showing a tendency as a temporary urban inhabitant.
description: formica_genotypes