cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.st6sc
title: Data from: Defensive traits exhibit an evolutionary trade-off and drive diversification in ants

description: Evolutionary biologists have long predicted that evolutionary trade-offs
 among traits should constrain morphological divergence and species
 diversification. However, this prediction has yet to be tested in a broad
 evolutionary context in many diverse clades, including ants. Here, we
 reconstruct an expanded ant phylogeny representing 82% of ant genera,
 compile a new family-wide trait database, and conduct various trait-based
 analyses to show that defensive traits in ants do exhibit an evolutionary
 trade-off. In particular, the use of a functional sting negatively
 correlates with a suite of other defensive traits including spines, large
 eye size, and large colony size. Furthermore, we find that several of the
 defensive traits that trade off with a sting are also positively
 correlated with each other and drive increased diversification, further
 suggesting that these traits form a defensive suite. Our results support
 the hypothesis that trade-offs in defensive traits significantly constrain
 trait evolution and influence species diversification in ants.
description: Trait Database of
 Morphological & Ecological Traits for All Ant GeneraTrait database including
 various morphological and ecological traits for every described ant genus
 (as of June 2015). Data collected from the primary literature as well as
 online databases (primarily AntWeb and AntWiki). Traits were binned into
 discrete categories that are described in the header of each column for
 each trait.TableS4_AllGeneraDefensiveTraits_DRYAD.xlsxMCC Tree of the Ants with Data MatrixNexus file including the Maximum Clade Credibility (MCC) genus-tree of the ants and associated aligned matrix of nine concatenated nuclear and mitochondrial genes.BlanchardMoreau_ConcatenatedMatrix_MCCTree_Combined
DOI: 10.5061/dryad.2qg86
title: Data from: The cost of phage resistance in a plant pathogenic bacterium is context-dependent

description: Parasites are ubiquitous features of living systems and many parasites
 severely reduce the fecundity or longevity of their hosts. This
 parasite-imposed selection on host populations should strongly favor the
 evolution of host resistance, but hosts typically face a trade-off between
 investment in reproductive fitness and investment in defense against
 parasites. The magnitude of such a trade-off is likely to be
 context-dependent, and accordingly costs that are key in shaping evolution
 in nature may not be easily observable in an artificial environment. We
 set out to assess the costs of phage resistance for a plant pathogenic
 bacterium in its natural plant host versus in a nutrient-rich, artificial
 medium. We demonstrate that mutants of Pseudomonas syringae that have
 evolved resistance via a single mutational step pay a substantial cost for
 this resistance when grown on their tomato plant hosts, but do not realize
 any measurable growth rate costs in nutrient-rich media. This work
 demonstrates that resistance to phage can significantly alter bacterial
 growth within plant hosts, and therefore that phage-mediated selection in
 nature is likely to be an important component of bacterial pathogenicity.
description: Costs of resistance CFU
 countsP.syringae colony
 forming unit counts from homogenized tomato leaf samples. Each
 'strain' relates to a selected phage-resistant genotype or the
 ancestral, phage-sensitive genotype.costs_of_resistance_cfu_data.csvOptical density growth curvesOptical density readings of bacterial growth curves at 600nm in KB broth.plate_reader_data.csvIllumina readsForward and reverse Illumina reads for each bacterial line. The sensitive P.syringae DC3000 ancestral line is called DC3ANC and all other 3 letter codes at the start of the filename refer to each of the mutant lines generated in the experiment.costs_geno_seqs.tar.gz
DOI: 10.15468/dl.hm4px4
title: Occurrence Download

description: A dataset containing 100000 records in GBIF matching the query:
SELECT
 gbifid,
 datasetkey,
 scientificname,
 kingdom,
 phylum,
 basisofrecord,
 eventdate,
 decimallatitude,
 decimallongitude,
 v_verbatimcoordinates,
 elevation,
 v_verbatimelevation,
 coordinateuncertaintyinmeters,
 issue
FROM
 occurrence
WHERE
 occurrence.kingdom = 'Plantae'
 AND occurrence.phylum = 'Tracheophyta'
 AND occurrence.decimallatitude IS NOT NULL
 AND occurrence.decimallongitude IS NOT NULL
 AND occurrence.decimallatitude &gt;= -90
 AND occurrence.decimallatitude &lt;= 90
 AND occurrence.decimallongitude &gt;= -180
 AND occurrence.decimallongitude &lt;= 180
ORDER BY
 RAND()
LIMIT 100000

 The dataset's 100000 records were derived from 14791 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001723-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30616130
title: Supplementary Material for: High prevalence of low creatine intake among individuals following common special diets

description: Creatine, a conditionally essential nutrient primarily from animal-based foods, may be insufficient in certain dietary patterns. Using NHANES data (2003–2023), this cross-sectional study examined creatine intake in 8,407 individuals following special diets. Over two-thirds consumed less than one gram per day, with the highest prevalence in low-fiber (83.3%), high-fiber (82.1%), and gluten-free (79.2%) diets. These findings suggest a widespread risk of creatine insufficiency linked to restrictive diets. Given creatine’s role in energy metabolism and health, strategies such as supplementation or creatine-fortified foods may be warranted. Longitudinal studies are needed to guide intake recommendations and assess long-term outcomes.
DOI: 10.6084/m9.figshare.30616130.v1
title: Supplementary Material for: High prevalence of low creatine intake among individuals following common special diets

description: Creatine, a conditionally essential nutrient primarily from animal-based foods, may be insufficient in certain dietary patterns. Using NHANES data (2003–2023), this cross-sectional study examined creatine intake in 8,407 individuals following special diets. Over two-thirds consumed less than one gram per day, with the highest prevalence in low-fiber (83.3%), high-fiber (82.1%), and gluten-free (79.2%) diets. These findings suggest a widespread risk of creatine insufficiency linked to restrictive diets. Given creatine’s role in energy metabolism and health, strategies such as supplementation or creatine-fortified foods may be warranted. Longitudinal studies are needed to guide intake recommendations and assess long-term outcomes.
DOI: 10.6084/m9.figshare.30616133
title: Supplementary Material for: The role of dietary and lifestyle factors in multiple sclerosis risk in a middle eastern country: A case-control study

description: Background: Multiple Sclerosis (MS) is a chronic neurological disorder that primarily affects young adults and is characterized by inflammation of the central nervous system. Although genetic, immunological, and environmental factors contribute to MS risk, the role of diet remains underexplored in the Kuwaiti population. This case-control study evaluated the dietary and lifestyle factors associated with MS risk in Kuwait.
Methods: A total of 152 confirmed MS cases, diagnosed according to the revised McDonald criteria, and 279 controls were enrolled from private hospitals and a public office setting. Data on demographics, medical history, sun exposure, physical activity, supplement use, and dietary intake were collected using a structured electronic questionnaire. Nutrient intake was estimated using food frequency data and nutrient databases. Multivariable logistic regression was used to identify dietary and lifestyle factors independently and significantly (p &lt; 0.05) associated with MS risk.
Results: Compared with controls, MS cases were more likely to be Kuwaiti nationals (adjusted OR = 7.85, 95% CI: 2.85–21.60), have lifelong history of obesity (adjusted OR = 3.12, 95% CI: 1.34–7.25), and exceed recommended sodium intake (adjusted OR = 5.05, 95% CI: 2.22–11.51). MS cases also showed inadequate vitamin C intake (adjusted OR = 3.45, 95% CI: 1.64–7.27), irregular vitamin D supplement use (adjusted OR = 0.27, 95% CI: 0.14–0.54), and insufficient vitamin B2 intake (adjusted OR = 2.25, 95% CI: 1.05–4.83). Regular light physical activity (≥ 3 times per week) was associated with significantly reduced MS risk (adjusted OR = 0.23, 95% CI: 0.10–0.53).
Conclusion: This study identified high sodium intake, inadequate vitamin B2 consumption, and obesity as significant risk factors for MS, while regular light physical activity appeared to lower MS risk. Public health initiatives addressing these factors may help reduce MS risk in Kuwait and other similar settings. Future studies are needed to confirm these findings.
DOI: 10.6084/m9.figshare.30616133.v1
title: Supplementary Material for: The role of dietary and lifestyle factors in multiple sclerosis risk in a middle eastern country: A case-control study

description: Background: Multiple Sclerosis (MS) is a chronic neurological disorder that primarily affects young adults and is characterized by inflammation of the central nervous system. Although genetic, immunological, and environmental factors contribute to MS risk, the role of diet remains underexplored in the Kuwaiti population. This case-control study evaluated the dietary and lifestyle factors associated with MS risk in Kuwait.
Methods: A total of 152 confirmed MS cases, diagnosed according to the revised McDonald criteria, and 279 controls were enrolled from private hospitals and a public office setting. Data on demographics, medical history, sun exposure, physical activity, supplement use, and dietary intake were collected using a structured electronic questionnaire. Nutrient intake was estimated using food frequency data and nutrient databases. Multivariable logistic regression was used to identify dietary and lifestyle factors independently and significantly (p &lt; 0.05) associated with MS risk.
Results: Compared with controls, MS cases were more likely to be Kuwaiti nationals (adjusted OR = 7.85, 95% CI: 2.85–21.60), have lifelong history of obesity (adjusted OR = 3.12, 95% CI: 1.34–7.25), and exceed recommended sodium intake (adjusted OR = 5.05, 95% CI: 2.22–11.51). MS cases also showed inadequate vitamin C intake (adjusted OR = 3.45, 95% CI: 1.64–7.27), irregular vitamin D supplement use (adjusted OR = 0.27, 95% CI: 0.14–0.54), and insufficient vitamin B2 intake (adjusted OR = 2.25, 95% CI: 1.05–4.83). Regular light physical activity (≥ 3 times per week) was associated with significantly reduced MS risk (adjusted OR = 0.23, 95% CI: 0.10–0.53).
Conclusion: This study identified high sodium intake, inadequate vitamin B2 consumption, and obesity as significant risk factors for MS, while regular light physical activity appeared to lower MS risk. Public health initiatives addressing these factors may help reduce MS risk in Kuwait and other similar settings. Future studies are needed to confirm these findings.
DOI: 10.57760/sciencedb.31752
title: First Time Observed M-Shaped Coronal Mass Ejection Associated with a Blowout Jet and an Extreme Ultraviolet Wave
title: First Time Observed M-Shaped Coronal Mass Ejection Associated with a Blowout Jet and an Extreme Ultraviolet Wave

description: RAA-2025-0412.R1
description: RAA-2025-0412.R1
DOI: 10.15468/dl.t3fx75
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-109.0188 22.04913, -108.8688 22.04913, -108.8688 22.19913, -109.0188 22.19913, -109.0188 22.04913))"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032531-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.66v6v9
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-108.8688 22.04913, -108.7188 22.04913, -108.7188 22.19913, -108.8688 22.19913, -108.8688 22.04913))"
 ]
}

 The dataset includes 17 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032532-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gma6zc
title: Occurrence Download

description: A dataset containing 20093 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psorothamnus"
 ]
}

 The dataset includes 20093 records from 200 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032533-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jxapkm
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-108.7188 22.04913, -108.5688 22.04913, -108.5688 22.19913, -108.7188 22.19913, -108.7188 22.04913))"
 ]
}

 The dataset includes 17 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032534-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qng79s
title: Occurrence Download

description: A dataset containing 513 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-69.82967 6.407,-72.09853 2.83506,-70.81103 2.84159,-70.4106 3.38067,-69.92157 3.46131,-69.17836 4.09522,-68.86418 3.68657,-67.76879 4.11693,-67.89824 4.60868,-67.80317 5.26379,-67.78052 5.41975,-67.47643 6.22118,-67.8064 6.22122,-68.54821 6.1877,-69.08771 6.15417,-69.42225 6.13672,-69.82967 6.407))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vanellus chilensis",
 "Year 2021-2025"
 ]
}

 The dataset includes 513 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032535-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16814448
title: Supporting data of "Influence of developmental diet on adult energy reserves in Drosophila"

description: The data generated in the study:  Makwisa E., Procházka, E., Gáliková, M., Klepsatel P.: Influence of developmental diet on adult energy reserves in Drosophila

The study was supported by the EU NextGenerationEU through the Recovery and Resilience Plan for Slovakia under the project no. 09I03-03-V04-00570 and no. 09I01-03-V05-00001
DOI: 10.5281/zenodo.16814447
title: Supporting data of "Influence of developmental diet on adult energy reserves in Drosophila"

description: The data generated in the study:  Makwisa E., Procházka, E., Gáliková, M., Klepsatel P.: Influence of developmental diet on adult energy reserves in Drosophila

The study was supported by the EU NextGenerationEU through the Recovery and Resilience Plan for Slovakia under the project no. 09I03-03-V04-00570 and no. 09I01-03-V05-00001
DOI: 10.15468/dl.qbwjb7
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-108.5688 22.04913, -108.4188 22.04913, -108.4188 22.19913, -108.5688 22.19913, -108.5688 22.04913))"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032536-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b57m67
title: Occurrence Download

description: A dataset containing 4359 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Espeletia grandiflora"
 ]
}

 The dataset includes 4359 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032537-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v65xeq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-108.4188 22.04913, -108.2688 22.04913, -108.2688 22.19913, -108.4188 22.19913, -108.4188 22.04913))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032538-251025141854904/datasets/export for details.
DOI: 10.15468/dl.798crk
title: Occurrence Download

description: A dataset containing 945 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei, Hong Kong, Macao)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Krascheninnikovia ceratoides"
 ]
}

 The dataset includes 945 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032539-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vdhurx
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-108.2688 22.04913, -108.1188 22.04913, -108.1188 22.19913, -108.2688 22.19913, -108.2688 22.04913))"
 ]
}

 The dataset includes 73 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032540-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25740/zt410bf9823
title: Artificial Intelligence-Generated Draft Replies to Patient Messages in Pediatrics

description: Objective: This study describes the utilization of and experiences with artificial intelligence (AI)-generated draft responses to patient messages in pediatric ambulatory clinicians and contextualizes their experiences in relation to those of adult specialty clinicians.
Materials and Methods: A prospective pilot was conducted from September 2023 to August 2024 in two pediatric clinics (General Pediatric and Adolescent Medicine) and two obstetric clinics (Reproductive Endocrinology and Infertility and General Obstetrics) within an academic health system in Northern California. Participants included physician, nurse, and medical assistant volunteers. The intervention involved a feature utilizing large language models embedded in the electronic health record to generate draft responses. Proportion of AI-generated draft used was collected, as were pre-pilot and follow-up surveys.
Results: A total of 61 clinicians (26 pediatric, 35 obstetric) enrolled, with 46 (75%) completing both surveys. Pediatric clinicians utilized 13.3% (95% CI 12.3-14.4%) of AI-generated drafts, and usage rates when responding to patients vs their proxies was similar (15% vs 12.9%, p = 0.24). Despite using AI-generated drafts significantly less than obstetric clinicians (18.3% [17.2-19.5%], p < 0.0001), pediatric clinicians reported a significant reduction in perceived task load (NASA TLX: 59.9 to 50.9, p = 0.04) and were more likely to recommend the tool (LTR: 7.0 vs. 5.2, p = 0.04).
Discussion and Conclusion: Pediatric clinicians used AI-generated drafts at a rate within previously reported ranges in adult specialties and experienced utility. These findings suggest this tool has potential for enhancing efficiency and reducing task load in pediatric care.
DOI: 10.15468/dl.y4ke2k
title: Occurrence Download

description: A dataset containing 413 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tupaia glis"
 ]
}

 The dataset includes 413 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032541-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30616231
title: Additional file 1 of Deep-sea corals near cold seeps associate with sulfur-oxidizing chemoautotrophs in the family Ca. Thioglobaceae

description: Additional File 1: Supplementary Tables S1-S12. Includes (S1) sample breakdown by site, (S2) sample metadata, (S3) McLane pump metadata, (S4) accessions of sequences used in trees, (S5) ASV table, (S6) blastn results of ASVs against cloned sequences, (S7) RASTtk genome annotations and kallisto expression levels, (S8) Classic RAST annotations (S9-12) stable isotope data and statistical analyses.
DOI: 10.6084/m9.figshare.30616231.v1
title: Additional file 1 of Deep-sea corals near cold seeps associate with sulfur-oxidizing chemoautotrophs in the family Ca. Thioglobaceae

description: Additional File 1: Supplementary Tables S1-S12. Includes (S1) sample breakdown by site, (S2) sample metadata, (S3) McLane pump metadata, (S4) accessions of sequences used in trees, (S5) ASV table, (S6) blastn results of ASVs against cloned sequences, (S7) RASTtk genome annotations and kallisto expression levels, (S8) Classic RAST annotations (S9-12) stable isotope data and statistical analyses.
DOI: 10.6084/m9.figshare.30616320
title: Additional file 1 of Evolutionary history reveals information on the functionality of ear tufts in owls (family: Strigidae)

description: Additional file1 (XLSX 21 KB)
DOI: 10.6084/m9.figshare.30616320.v1
title: Additional file 1 of Evolutionary history reveals information on the functionality of ear tufts in owls (family: Strigidae)

description: Additional file1 (XLSX 21 KB)
DOI: 10.6084/m9.figshare.30616327
title: Additional file 2 of Red seaweed supplementation suppresses methanogenesis in the rumen, revealing potentially advantageous traits among hydrogenotrophic bacteria

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.30616327.v1
title: Additional file 2 of Red seaweed supplementation suppresses methanogenesis in the rumen, revealing potentially advantageous traits among hydrogenotrophic bacteria

description: Supplementary Material 2.
DOI: 10.15468/dl.rdw94h
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-108.1188 22.04913, -107.9688 22.04913, -107.9688 22.19913, -108.1188 22.19913, -108.1188 22.04913))"
 ]
}

 The dataset includes 13 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032542-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30616341
title: Additional file 1 of Gene expression changes in pancreatic α-cell lines following knock-out Of either CK2α or CK2α’

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.30616341.v1
title: Additional file 1 of Gene expression changes in pancreatic α-cell lines following knock-out Of either CK2α or CK2α’

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.30616345
title: Additional file 1 of Is the incidence of ABO blood groups incompatibility among Egyptian mothers and its relation to critical neonatal hyperbilirubinemia in healthy term and near-term newborns worth screening? Al Galaa Teaching Hospital experience

description: Supplementary Material 1