cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.2744032.v1
title: Understanding initial undergraduate expectations and identity in computing studies

description: There is growing appreciation of the importance of understanding the student perspective in Higher Education (HE) at both institutional and international levels. This is particularly important in Science, Technology, Engineering and Mathematics subjects such as Computer Science (CS) and Engineering in which industry needs are high but so are student dropout rates. An important factor to consider is the management of students’ initial expectations of university study and career. This paper reports on a study of CS first-year students’ expectations across three European countries using qualitative data from student surveys and essays. Expectation is examined from both short-term (topics to be studied) and long-term (career goals) perspectives. Tackling these issues will help paint a picture of computing education through students’ eyes and explore their vision of its and their role in society. It will also help educators prepare students more effectively for university study and to improve the student experience.
DOI: 10.6084/m9.figshare.12645458.v1
title: Gene database of Shewanella putrefaciens CN-32

description: <i>Shewanella putrefaciens</i> is a Gram-negative, facultative anaerobic bacterium whose natural habitat is the marine environment. Capable of using manganese and iron as terminal electron acceptors in the electron transport chain, the bacterium has been tapped for biotechnology purposes such as production of nanoparticles through surface mediated reactions on the cell membrane. More recently, <i>S. putrefaciens</i> is exploited for use in bioelectrochemical reactions to power a bioeconomy. This work sought to provide fundamental information of the genetic repertoire of <i>S. putrefaciens</i> CN-32 through parsing the annotated genome sequence of the bacterium available on Genbank. The resulting gene database comprise gene name, gene function, and gene sequence, and should find use in guiding molecular cloning work to exploit the genetic endowment of <i>S. putrefaciens</i> for applications in other microbial chassis. At the same time, the gene database is also useful for informing genome editing workflow to construct loss of function mutants needed in functional elucidation of genes in this emerging biotechnology workhorse.
DOI: 10.6084/m9.figshare.21707888.v5
title: dipolar cycloaddition dataset

description: This dataset consists of 5269 reaction profiles computed in a high-throughput manner at B3LYP-D3(BJ)/def2-TZVP//B3LYP-D3(BJ)/def2-SVP level of theory with the help of autodE and Gaussian 16. Reaction IDs and SMILES, activation energies (G_act; in kcal/mol) and reaction energies (G_r; in kcal/mol) for each computed reaction profile are provided in CSV format (full_dataset.csv). XYZ-files for each reactant (both the original and stereo-constrained versions), TS and product species as well as a CSV file containing computed electronic energies and thermal corrections are available in a compressed archive file, full_dataset_profiles.tar.gz. <br> The files have been organized per reaction profile, identified through the reaction ID. Within each directory, reactant XYZ-files are of the form r#####.xyz, product XYZ-files are of the form p#####.xyz, and transition state XYZ-files are of the form TS_#####.xyz. If the reactant dipole conformer had to be corrected to enforce stereochemical compatibility, the latter XYZ-files are included under to form of r#####_alt.xyz. The energies for all of these species are summarized per directory in energies.csv. <br> Additionally, all the benchmarking data are made available in the benchmarking_data.tar.gz directory
DOI: 10.6084/m9.figshare.12009375.v1
title: Datafile Peeters et al. (2020) - Separate effects of BoNT-A and casting.xlsx

description: This data was collected for the investigation of Peeters et al (2020) - Joint and Muscle Assessments of the Separate Effects of Botulinum NeuroToxin-A and Lower-Leg Casting in Children With Cerebral Palsy.This data file contains baseline characteristics, muscle morphology and joint hyper-resistance parameters.
DOI: 10.6084/m9.figshare.21564384.v9
title: brain-decoding-cookbook

description: Example data used in brain-decoding-cookbook.

 The original Ceffe parameters of pretrained VGG-19 is available at http://www.robots.ox.ac.uk/~vgg/software/very_deep/caffe/VGG_ILSVRC_19_layers.caffemodel.
 The original Caffe parameters of the pretrained image generator is available at https://lmb.informatik.uni-freiburg.de/resources/binaries/arxiv2016_alexnet_inversion_with_gans/release_deepsim_v0.zip. See also Dosovitskiy & Brox (2016) Generating Images with Perceptual Similarity Metrics based on Deep Networks. https://arxiv.org/abs/1602.02644.
 The decoded features ("decoded_features-ImageNetTest-deeprecon_originals-VGG19.zip") are produced by Shen, Horikawa, Majima, and Kamitani (2019) Deep Image Reconstruction from Human Brain Activity. <em>PLoS Computational Biology</em> 15:e1006633.

<br>
DOI: 10.6084/m9.figshare.3566397.v1
title: Appendix F. Results of two-factor ANOVA testing effects of sex, edge, and sex×edge interaction on three major carotenoid pigments.

description: Results of two-factor ANOVA testing effects of sex, edge, and sex×edge interaction on three major carotenoid pigments.
DOI: 10.6084/m9.figshare.21586182.v1
title: GGP Bovine 100K chip of 61 purebred Chinese Red Steppe cattle

description: 61 CRS individuals, sampled were genotyped using GGP Bovine 100K chip
DOI: 10.6084/m9.figshare.28127474.v1
title: Numerical data for Figure 3C and Figure 3D

description: Numerical data for figure 3C and 3D. Average values were calculated per experimental group defined by column subfolder, CI was calculated considering n as a number of unique cells coded in variable unique_TRACK_ID within experimental group coded in variable subfolderMEAN_INTENSITY_CH1- raw average 488/405 Excitation ratio, per cell in given frame, plotted as on Y axis in figure 3Cnormailzed_MEAN_INTENSITY_CH1- normalized average 488/405 Excitation ratio, per cell in given frame, plotted as on Y axis in figure 3DFRAME- frame number used as a basis for X axisfile_name- experimentsubfolder_experimental groupunique_TRACK_ID- unique cell identifier<br>
DOI: 10.6084/m9.figshare.3754701.v1
title: AUTO GLASS FINISHED optimized.txt

description: This is a text file associated with Ref. [11] from R. Siew, "Practical automated glass selection and the design of apochromats with large field of view," App. Opt. 55, pp. 9232 - 9236 (2016). It lists the lens prescription for the Zemax lens file of Ref. [10] in the above manuscript. This lens represents a re-optimized state of the prior lens "AUTO GLASS FINISHED.zmx". The design form is based on the design by A. Yang, X. Gao, and M. Li, "Design of apochromatic lens with large field and high definition for machine vision," App. Opt. 55, 5977 - 5985 (2016).
DOI: 10.6084/m9.figshare.6992585.v1
title: Bufotenine is able to block rabies virus infection in BHK-21 cells

description: Background Rabies is a fatal zoonotic neglected disease that occurs in more than 150 countries, and kills more than 55.000 people every year. It is caused by an enveloped single stranded RNA virus that affects the central nervous system, through an infection initiated by the muscular nicotinic acetylcholine receptor, according to many authors. Alkaloids, such as acetylcholine, are widespread molecules in nature. They are present in numerous biological fluids, including the skin secretion of many amphibians, in which they act (together with proteins, peptides and steroids) as protection agents against predators and/or microorganisms. Among those amphibians that are rich in alkaloids, there is the genus Rhinella.Methods Bufotenine was isolated from Rhinela jimi skin secretion after a liquid-liquid partition (H2O:CH2Cl2) and reversed phase high-performance liquid chromatography analyses (RP-HPLC). Bufotenine was also extracted from seeds of Anadenanthera colubrina in acetone solution and purified by RP-HPLC, as well. Structural characterization was performed by mass spectrometry and nuclear magnetic resonance analyses. Cytotoxic tests of bufotenine were performed over baby hamster kidney (BHK-21) cells using MTT test. For the antiviral activity,Rabies virus strain Pasteur vaccine (PV) was used on fluorescence inhibition test and fluorescent foci inhibition test, with both simultaneous and time course treatment of the cells with the virus and bufotenine.Results In the present work we describe the effects of bufotenine, obtained either from toads or plants, that can inhibit the penetration of rabies virus in mammalian cells through an apparent competitive mechanism by the nicotinic acetylcholine receptor. Moreover, this inhibition was dose- and time-dependent, pointing out to a specific mechanism of action.Conclusions This work do not present or propose bufotenine as a drug for the treatment of rabies due to the hallucinogen and psychotropic effects of the molecule. However, continued studies in the elucidation of the antiviral mechanism of this molecule, may lead to the choice or development of a tryptamine analogue presenting potential clinical use.
DOI: 10.6084/m9.figshare.25547818.v1
title: grainsapce- rice g600

description: grainspace rice g600
DOI: 10.6084/m9.figshare.28647377.v1
title: Supplementary Material for: Effects of two different basic skin care regimens on children and adult skin microbiota: an exploratory randomized controlled crossover trial

description: Regular use of leave-on skin care products has positive effects on the skin barrier and appears to influence the skin microbiome in atopic dermatitis (AD). However, product-related effects on the skin microbiome are unclear. The aim of this study was to investigate to which extent the application of an emollient plus product differs from a petrolatum-based basic skin care product in terms of skin physiology, skin barrier and skin microbiome.
In an exploratory study regime fifty subjects (children and adults) with mild AD were randomized to receive Bepanthen SensiDaily® (BSD) and Basiscreme DAC (DAC) for three months in a cross-over design. Skin physiological measurements and skin microbiome swabs were taken on the forearm and lower leg before and after each 3-month application period of the respective product. 
Improvement of skin physiological parameters after 3 months was observed in both topical leave on product groups. Statistically significant differences were observed in baseline microbiomes between children and adults (p&lt;0.001) but not between the product groups.
Regular application of leave-on products leads to better stratum corneum hydration after 3 months with better effects of BSD on the forearms of children and the lower legs of adults compared to DAC. The application of BSD and DAC did not lead to significant alterations in the overall composition of the skin microbiome. Although there were shifts in the frequency of certain microbial genera, these changes were not consistent between age groups and treatments.
DOI: 10.6084/m9.figshare.7039997.v2
title: Oxford RUG Talk September 2018

description: This deposit contains the presentation slides and code written during the live coding components of a talk delivered to the Meetup.com Oxford R User Group on 2018-09-03 by Martin John Hadley.<br>The "2018-09-03 Oxford R Meetup Talk.pdf" file contains the slides (written using Google Slides).<br>The README.md file provides further details about this deposit
DOI: 10.6084/m9.figshare.24004182.v1
title: A Database of Thermally Activated Delayed Fluorescent Molecules Auto-generated from Scientific Literature with ChemDataExtractor

description: Master and subsidiary databases that contain data records of four TADF-relevant properties (figshare_std_value_exp_flag.zip)BERT-based language model for the associated paper (exp_theory_stsplit_classifer.pth)Bespoke TADF-specific version of ChemDataExtractor codebase (chemdataextractorTADF-main)
DOI: 10.6084/m9.figshare.21787226.v1
title: Supplementary material: Effects of occurrence data density on conservation prioritization strategies

description: Supplementary Material for the manuscript "Effects of occurrence data density on conservation prioritization strategies" <br> Contents: Complete_process.R. Commented R script with code to reproduce all analyses. Data.zip. Compressed folder containing species occurrence data filtered. <br> Polygons.zip. Compressed folder containing geopackage files with polygons to separate occurrence data for two species fo Sturnella. <br> Restriction_polygons.zip. Compressed folder containing geopackage files with polygos to restrict occurrence data to species breeding areas in the USA. <br> Zonation_input.zip. Compressed folder containing raster layers to be used in analyses with Zonation.
DOI: 10.6084/m9.figshare.27798429.v1
title: Final_PowerSystem_Dataset

description: The power system datasets have been used for multiple works related to power system cyber-attack classification.
DOI: 10.6084/m9.figshare.8061905.v1
title: Mycobacterium bovis BCG Danish delta-sapM genome sequence

description: Mycobacterium bovis BCG Danish delta-sapM genome sequence
DOI: 10.6084/m9.figshare.704792.v1
title: Reviews of Bruno et al 2013

description: Reviews of Bruno et al. (2013) from six journals listed in reverse chronological order. The manuscript was resubmitted to Ecosphere once and FEE twice. Note this is a supplement to Bruno. J.F., W.F. Precht, P.S. Vroom and R.B. Aronson. 2013. Coral reef baselines: how much macroalgae is natural? PeerJ PrePrints
DOI: 10.6084/m9.figshare.21294840.v1
title: Kapferer-Tailor-Shop_Multiplex_Social.zip

description: The dataset representing the multiplex social network in a tailor shop. If you use this dataset in your work either for analysis or for visualization, you should acknowledge/cite the following book: "Strategy and transaction in an African factory" Kapferer B. (1972) Manchester: Manchester University Press <br> Interactions in a tailor shop in Zambia (then Northern Rhodesia) over a period of ten months. <br> Layers represent two different types of interaction, recorded at two different times (seven months apart) over a period of one month. TI1 and TI2 record the "instrumental" (work- and assistance-related) interactions at the two times; TS1 and TS2 the "sociational" (friendship, socioemotional) interactions. <br> The data are particularly interesting since an abortive strike occurred after the first set of observations, and a successful strike took place after the second. <br> There are 39 nodes in total, labelled with integer ID between 1 and 39, with 1018 connections. The multiplex is directed and unweighted, stored as edges list in the file Kapferer-Tailor-Shop_multiplex.edges <br> with format <br> layerID nodeID nodeID weight <br> (Note: all weights are set to 1) <br> The IDs of all layers are stored in <br> Kapferer-Tailor-Shop_layers.txt <br> The IDs of nodes and their label can be found in the file <br> Kapferer-Tailor-Shop_nodes.txt <br>
DOI: 10.6084/m9.figshare.5155885.v1
title: Lassa fever outbreaks and seroprevalence database

description: Database of case reports of Lassa fever acute human cases and rodent/human seroprevalence. Used in Gibb et al, 'Understanding the cryptic nature of Lassa fever in West Africa', 2017: https://doi.org/10.1080/20477724.2017.1369643
DOI: 10.6084/m9.figshare.19959362.v3
title: <b>A global dataset for steel, aluminum, and cement in-use stocks at 500 m gridded level, 2000-2019</b>

description: The refined results help systematically reveal the spatiotemporal dynamics of materials accumulation in the world, including discrepancies in distribution between and within cities. Our findings will provide a solid database to support urban resource and waste management, spatial planning as well as additional measurement for urbanization, in addition to population and land, on the national or regional levels.
DOI: 10.6084/m9.figshare.21835053.v1
title: raw data of prection comparison

description: Raw data derived from different algorithm prediction model in PB4 Working condition, which was used for comparison with CFD simulation results, applied for Fig 9
DOI: 10.6084/m9.figshare.13651346.v1
title: SmartSHARK MongoDB Release 2.0

description: Release 2.0 adds data for more projects, and extends the data for all projects with CI and pull request data.<br>A smaller version of the data set that does not contain the results for static analysis of commits, i.e., no code entity states, code group states, or clone instances, can be found here: https://doi.org/10.5281/zenodo.4462750<br>Details can be found on our homepage: https://smartshark.github.io/dbreleases/<br>Please do not cite this Zenodo archive or just the DOI directly, but follow our citation guide instead: https://smartshark.github.io/citation/<br>
DOI: 10.6084/m9.figshare.21962249.v1
title: Noise Map Data

description: Noise map area and decibel levels.
DOI: 10.6084/m9.figshare.28806041.v5
title: Matlab code for topology optimization with cost constraints and result datas under different weight factors

description: Matlab code for topology optimization with cost constraints and result datas under different weight factors
DOI: 10.6084/m9.figshare.8342405.v1
title: project1.xls

description: This data from a cross-sectional study conducted in the four main cities of Eastern Province, Saudi Arabia, (AL-Khobar, Dammam, Qatif, and Safwa) between May 2016 and July 2016. A nonprobability method was used to select the sample population. The questionnaire was distributed online through social media (e.g., WhatsApp, Twitter, Facebook, LinkedIn, email). <br>Approval was obtained from the research committee of the Ministry of Health (MoH) in Eastern Province, SA, to perform the study in the MoH PHCs.<br>Written consent was obtained on the first page of the survey. The survey did not contain any identifying information and was labeled by serial number only. The online survey was conducted securely via SurveyMonkey without collecting responder IP addresses.
DOI: 10.6084/m9.figshare.22691134.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.25546771.v4
title: Data and codes for "Reducing soil nitrogen losses from fertilizer use in global maize and wheat production".

description: Dataset, codes and source data for "Reducing soil nitrogen losses from fertilizer use in global maize and wheat production".<br>
DOI: 10.6084/m9.figshare.28942898.v1
title: Genomic information of <i>Bacillus</i> T1

description: The genomic information of <i>Bacillus</i> T1 isolated from W82 roots
DOI: 10.6084/m9.figshare.6885089.v1
title: Euripides Orestes Chorus

description: <i>EMAP Resources for Euterpe 1</i>Performing materials by Barnaby Brown and Armand D'Angourfor voice and Pydna/Poseidonia aulos<br>Download the PDF "Euripides-Orestes-Chorus…" first. The other files (beginning "Orestes…") are the open formats that allow users to edit the elements bound in this volume.<br>
DOI: 10.6084/m9.figshare.21313650.v1
title: Road mortality data for Ecuadorian wildlife

description: Data for publication Medrano-Vizcaíno P., Brito-Zapata, D., Rueda, A., Jarrín, P., Aguilar, J., Acosta, N., and González-Suárez M. 2022. First national assessment of wildlife mortality in Ecuador: an effort from citizens and academia to collect roadkill data at country scale. <br> We include two .csv files that contain 333 roadkill rates for 242 Ecuadorian species (Appendix1_roadkillrates_systematic studies2023.csv), and 5010 roadkill records (4244 georeferenced) from 392 Ecuadorian species (Appendix2_Roadkill records Ecuador_2023). <br>
DOI: 10.6084/m9.figshare.24312529.v1
title: Document (1).pdf

description: reference list
DOI: 10.6084/m9.figshare.7306361.v2
title: A histopathological image dataset for endometrial disease diagnosis

description: Recent studies have shown that computer-aided diagnosis (CADx) systems based on deep learning can perform even better than human experts in detecting some common diseases, such as diabetic retinopathy and pneumonia. However, the scarcity of labeled medical imaging data impedes a broad application of this technique to diagnosis of other malignant tumors that receive relatively little attention, especially for women. For example, uterine cancer (also known as endometrial cancer) can seriously affect the female reproductive organs, but it receives less attention than breast cancer and lung cancer. We developed a histopathological image dataset of the endometrium to help alleviate the shortage of pathologically proven cases in using deep learning algorithms to train classification models for endometrial diseases. The dataset comprises ~3,300 joint-photographic-experts-group (JPEG) images from ~500 endometrial specimens stained with hematoxylin and eosin (H&E), each of which has a unique class label derived from the corresponding diagnosis made by three expert pathologists collectively. Note that we will continue to enrich this dataset in the future. All the related source code is available at https://github.com/ssea-lab/DL4ETI.
DOI: 10.6084/m9.figshare.26174980.v1
title: Supplementary data collection HEP and OWM

description: Supplementary data collection for the Nature Communications Paper "Reconstruction of Human Dispersal during Aurignacian on Pan-European Scale", including paleoclimate simulation data, Human Existence Potential (HEP) results, and Our Way Model (OWM) results.The used code for these calculations can be found in the corresponding code collection.
DOI: 10.6084/m9.figshare.9170765.v1
title: Data for: Genetics, morphology and diet of introduced populations of the ant-eating Texas Horned Lizard (Phrynosoma cornutum)

description: Data for: Genetics, morphology and diet of introduced populations of the ant-eating Texas Horned Lizard (Phrynosoma cornutum).
DOI: 10.6084/m9.figshare.14499348.v1
title: Storm time polar cap expansion: IMF clock angle dependence

description: Output from the OPENGGCM-RCM-CTIM model for the 5 real solar storm events and 3 synthetic tests
DOI: 10.6084/m9.figshare.23275559.v1
title: List of Planning for Health Supplementary Planning Documents/ Guidance

description: List of Local Planning for Health Supplementary Planning Documents, Planning Guidance or Advice Notes
DOI: 10.6084/m9.figshare.19801705.v1
title: Ostrea denselamellosa genome

description: A total length of 636 Mb and scaffold N50 around 71.80 Mb. 608.3 Mb (95.7% of the whole genome) were anchored to chromosomes. The genome assembly represents 98.2% completeness via matching 954 eukaryota core conserved genes.
DOI: 10.6084/m9.figshare.21679634.v1
title: pbmc_latent_cell.h5ad

description: Integrated cell embeddings of PBMC atlas (subset to 1M).
DOI: 10.6084/m9.figshare.22292959.v4
title: A Direct Observation of Up-Converted Room-Temperature Phosphorescence in an Anti-Kasha Dopant-Matrix System

description: TD-DFT calculations input and outfiles and transition rate calculation files.