cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/mw3w6c4j22.1
title: Effects of reversing the light-dark cycle on growth performance and intestinal health in heat-stressed broilers

description: Heat stress (HS) has severely restricted the growth and yield of livestock and poultry and has become a major obstacle to the development of animal husbandry. Reversal light-dark cycles (RLD) are a low-cost and highly effective method to regulate circadian rhythms. However, current studies have not demonstrated whether this method can improve the intestinal injury induced by HS in broilers. The RLD method was applied to HS broilers to observe the feeding behavior and condition of each group. The model was constructed for 21 days. Intestinal tissues were collected, and the experiment was carried out by HE staining, molecular biology, 16S rRNA sequencing, and other methods. This research found that HS not only hinders the growth and development of broilers but also leads to increased stress levels in the body and impairs intestinal function. After RLD treatment, the body weight of HS broilers increased significantly. In addition, it alleviates oxidative stress caused by HS, promotes the release of melatonin, and reduces the expression of cortisol (CORT) and HSP70. RLD also induced increased gene and protein expression of tight junction proteins and clock genes. Analysis of microbial diversity in the cecum showed that RLD could alter the structure of the cecal microbial community by increasing the abundance of Enterococcus faecalis, Lactobacillus, Bacteroidetes, and Ruminococcus. Furthermore, the activities of intestinal digestive enzymes and absorption enzymes were significantly improved. In conclusion, RLD improves the growth performance of broilers under HS conditions by reducing the stress response and protecting intestinal function.
DOI: 10.17632/9sd2mkvg7m.1
title: T300A SNP Association with COVID-19 Severity Norfolk Cohort and UK Biobank

description: Autophagy is an innate pathway associated with protection from virus infection. Our previous work has found that mutations in the autophagy protein ATG16L1 has a profound effect on influenza virus infection of mice. In this study we investigate the effect the ATG16L1 polymorphism in the pathogenesis of COVID-19 in humans.  ATG16L1 consists of two domains, an N-terminal CCD and C-terminal WD repeat domain separated by an extended, unstable linker region.  A common SNP, T300A (rs2241880), in the linker region is thought to encode a caspase 3 site allowing the removal of the WD domain.  The T300A SNP is associated with increased risk of inflammatory diseases, such as Crohn’s disease. In this study, we investigated the association in humans between ATG16L1 T300A SNP, and clinical symptoms of COVID-19 in both a local Norfolk cohort and two large UK biobank cohorts.  T300A homozygotes showed decreased frequency of some symptoms in all 3 cohorts and were protected against mild but not severe COVID-19 infection.  In the severe group T300A homozygotes showed increased fever, chest pain and shortness of breath.  In addition, T300A homozygotes have reduced anti-viral antibody production.  This may be due to the involvement of ATG16L1 T300A in antigen presentation through LC3- associated phagocytosis.
DOI: 10.17632/2w6464nknv
title: Data set - Public perception of the relationship between climate change and health in the Chilean population

description: The files contain the data from the simple frequency tables and cross-tabulations according to sex, age group, geographic area, and socioeconomic level
DOI: 10.17632/w7sp6krs7h.1
title: Navigating Intersecting Crises: A Systematic Review of Smallholder Farmers’ Adaptation to Climate Change in Conflict-Affected Areas

description: The published datasets are extracts from the systematic review of smallholder farmers' adaptation to climate change and contextual vulnerabilities in conflict-affected areas. The shared R scripts were used for analysis/illustration purposes.
DOI: 10.17632/2w6464nknv.1
title: Data set - Public perception of the relationship between climate change and health in the Chilean population

description: The files contain the data from the simple frequency tables and cross-tabulations according to sex, age group, geographic area, and socioeconomic level
DOI: 10.15468/dl.mduxp9
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-113.5188 30.74913, -113.3688 30.74913, -113.3688 30.89913, -113.5188 30.89913, -113.5188 30.74913))"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046384-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dj7wgx
title: Occurrence Download

description: A dataset containing 1100 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Panthera onca [GBIF Backbone Taxonomy])"
 ]
}

 The dataset includes 1100 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046385-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yczhwa
title: Occurrence Download

description: A dataset containing 7027 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (University of British Columbia Herbarium (UBC) - Bryophytes Collection, University of British Columbia Herbarium (UBC) - Vascular Plant Collection, University of British Columbia Herbarium (UBC) - Algae Collection, University of British Columbia - Spencer Entomological Collection (UBCZ), University of British Columbia Herbarium (UBC) - Lichen Collection, University of British Columbia Herbarium (UBC) - Fungi Collection, Cowan Tetrapod Collection - Mammals, Cowan Tetrapod Collection - Birds, Cowan Tetrapod Collection - Herpetology, Beaty Biodiversity Museum Fish Collection, Beaty Biodiversity Museum Fossil Collection, Beaty Biodiversity Museum Marine Invertebrate Collection)",
 "RecordedBy is one of (John W. Eastham)"
 ]
}

 The dataset includes 7027 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046386-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14161801
title: INSURE DK Vejrumbro 2021_22
DOI: 10.5281/zenodo.17480687
title: Artificial reefs shift viral life-history strategies from lytic to lysogenic
DOI: 10.15468/dl.9kfdse
title: Occurrence Download

description: A dataset containing 720696 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dryopteris filix-mas"
 ]
}

 The dataset includes 720696 records from 2353 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046361-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e231324
title: Data measuring avian influenza infection, mercury concentration, and body condition in wild waterfowl

description: These data represent mercury contamination, influenza infection, and 
body condition in eleven species of dabbling and diving ducks in the Pacific
 Flyway. These data support a USGS lead scientific publication. <br>This dataset was extracted from the USGS Science Data Catalog (SDC). A full metadata record is included.<br><br><br>
DOI: 10.3886/e231324v1
title: Data measuring avian influenza infection, mercury concentration, and body condition in wild waterfowl

description: These data represent mercury contamination, influenza infection, and 
body condition in eleven species of dabbling and diving ducks in the Pacific
 Flyway. These data support a USGS lead scientific publication. <br>This dataset was extracted from the USGS Science Data Catalog (SDC). A full metadata record is included.<br><br><br>
DOI: 10.3535/etz-j0x-pxd
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6vb-sdz-qdq
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ckl-l3n-77h
title: Cibicides Montfort, 1808

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7v3-b6n-e82
title: †Dentalina pseudoobliquestriata (Plummer, 1927)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qr8-9x5-lsc
title: Adelosina brongnartii (d'Orbigny, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6g6-nay-hzp
title: Duvalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9a2-fnj-x7d
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/498-s9q-8sg
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lpm-mr2-f4v
title: Pyrulina gutta (d'Orbigny, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mgl-err-kw4
title: Pseudothurmannia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/abe-z8a-ax9
title: Chrysalidinella dimorpha (Brady, 1881)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cv7-wvr-mw3
title: Glabratella millettii (Wright, 1911)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m43-9kc-6rt
title: †Neoflabellina rugosa (d'Orbigny, 1840)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nt6-r8q-rdt
title: Nummulites venosus (Fichtel & Moll, 1798)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/258-5ge-kk9
title: Calcarina mayori Cushman, 1924

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9mw-27m-z9s
title: Olcostephanus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bpc-zgf-1pa
title: †Guttulina paalzowi Cushman & Ozawa, 1930

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xcj-6kp-7wl
title: †Globoconusa daubjergensis (Brönnimann, 1953)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eb4-xcv-se2
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c0p-d22-smd
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e0x-fsl-pep
title: Operculina ammonoides (Gronovius, 1781)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n7z-y0e-abe
title: Pseudobelus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y3m-zlr-2bj
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s35-mr1-3ss
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/35j-bwl-vkm
title: Neolissoceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jqz-zym-7s5
title: †Laevidentalina megalopolitana (Reuss, 1855)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cd2-m4h-6wc
title: †Fuhrbergiella (Fuhrbergiella) Brand & Malz, 1962

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v14-mck-9fb
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d57-fk4-f2t
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8gl-ngq-8mc
title: Miliolidae Ehrenberg, 1839

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qfm-vtx-bw4
title: Duvalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/20j-exc-8yv
title: Duvalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c7g-qdh-6t9
title: Heterostegina depressa d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6rg-c4l-5jz
title: Heterostegina antillarum d'Orbigny, 1839

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vb1-y1v-qxv
title: Cetacea Brisson, 1762

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m5y-szz-10d
title: Eponides repandus (Fichtel & Moll, 1798)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n5j-phq-csf
title: Olcostephanus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v6w-jtt-06y
title: Melonis affinis (Reuss, 1851)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7dx-hls-aa9
title: Sigmoilopsis arenaria (Brady, 1884)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ytn-zrf-5gc
title: Pseudothurmannia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.nhq2wh
title: Occurrence Download

description: A dataset containing 11465 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ctenopharyngodon idella (Valenciennes, 1844), Salvinia minima Baker, Trachemys ornata (Gray, 1831), Tridentiger bifasciatus Steindachner, 1881, Xiphophorus hellerii Heckel, 1848)",
 "BasisOfRecord is one of (Human Observation)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11465 records from 183 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009235-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15469984
title: Monitoring the generation of photonic linear cluster states with partial measurements

description: Raw dataset associated with the paper "Monitoring the generation of photonic linear cluster states with partial measurements" - arXiv:2505.01929
DOI: 10.5281/zenodo.15469985
title: Monitoring the generation of photonic linear cluster states with partial measurements

description: Raw dataset associated with the paper "Monitoring the generation of photonic linear cluster states with partial measurements" - arXiv:2505.01929
DOI: 10.5281/zenodo.14825325
title: Data for Pereira et al. "Trace analysis of volatile fatty acids in marine waters using modern high-pressure ion chromatography"

description: Repository for data tabulated and used in figures in the manuscript entitled "Trace analysis of volatile fatty acids in marine waters using modern high-pressure ion chromatography" submitted for review to Limnology & Oceanography: Methods (LOM-24-10-0114). Full details of this study can be found in the accompanying manuscript.
DOI: 10.5281/zenodo.14825326
title: Data for Pereira et al. "Trace analysis of volatile fatty acids in marine waters using modern high-pressure ion chromatography"

description: Repository for data tabulated and used in figures in the manuscript entitled "Trace analysis of volatile fatty acids in marine waters using modern high-pressure ion chromatography" submitted for review to Limnology & Oceanography: Methods (LOM-24-10-0114). Full details of this study can be found in the accompanying manuscript.
DOI: 10.1594/pangaea.837087
title: Regulation of intracellular pH in cnidarians: response to acidosis in Anemonia viridis

description: The regulation of intracellular pH (pHi) is a fundamental aspect of cell physiology that has received little attention in studies of the phylum Cnidaria, which includes ecologically important sea anemones and reef-building corals. Like all organisms, cnidarians must maintain pH homeostasis to counterbalance reductions in pHi, which can arise because of changes in either intrinsic or extrinsic parameters. Corals and sea anemones face natural daily changes in internal fluids, where the extracellular pH can range from 8.9 during the day to 7.4 at night. Furthermore, cnidarians are likely to experience future CO2-driven declines in seawater pH, a process known as ocean acidification. Here, we carried out the first mechanistic investigation to determine how cnidarian pHi regulation responds to decreases in extracellular and intracellular pH. Using the anemone Anemonia viridis, we employed confocal live cell imaging and a pH-sensitive dye to track the dynamics of pHi after intracellular acidosis induced by acute exposure to decreases in seawater pH and NH4Cl prepulses. The investigation was conducted on cells that contained intracellular symbiotic algae (Symbiodinium sp.) and on symbiont-free endoderm cells. Experiments using inhibitors and Na-free seawater indicate a potential role of Na/H plasma membrane exchangers (NHEs) in mediating pHi recovery following intracellular acidosis in both cell types. We also measured the buffering capacity of cells, and obtained values between 20.8 and 43.8 mM per pH unit, which are comparable to those in other invertebrates. Our findings provide the first steps towards a better understanding of acid-base regulation in these basal metazoans, for which information on cell physiology is extremely limited.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-10-23.
description: Supplement to: Laurent, Julien; Venn, Alexander A; Tambutté, Eric; Ganot, Philippe; Allemand, Denis; Tambutté, Sylvie (2014): Regulation of intracellular pH in cnidarians: response to acidosis in Anemonia viridis. FEBS Journal, 281(3), 683-695
DOI: 10.1594/pangaea.892416
title: Effects of exposure to different target pCO2 levels on development and biochemical responses related with oxidative stress and energy metabolism during the crustacean Homarus gammarus (L.) larval development

description: The present study evaluated the effects of exposure to different target pCO2 levels: control (C: 370μatm, pH = 8.15) and ocean acidification (OA: 710μatm, pH = 7.85) on development and biochemical responses related with oxidative stress and energy metabolism during the crustacean Homarus gammarus (L.) larval development, integrating different levels of biological organization. After hatching in the laboratory, larvae from the same female brood were exposed to the described conditions from hatching until reaching Stage III (last larval stage – 11 days). H. gammarus larvae demonstrated some susceptibility when addressing the predicted pCO2 levels for 2100. Further analysis at the biochemical and physiological level highlighted the occurrence of oxidative stress in the OA scenario (Superoxide Dismutase reduction and higher DNA damage) that was followed by developmental effects, increased inter-moult period from SII to SIII and reduced growth. The extended exposure to these conditions may affect organisms' key life-cycle functions such as physiological resistance, growth, sexual maturation, or reproduction with implications in their future fitness and population dynamics.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-07-12.
description: Supplement to: Rato, Lénia D; Novais, Sara C; Lemos, Marco F L; Alves, Luís M F; Leandro, Sérgio M (2017): Homarus gammarus (Crustacea: Decapoda) larvae under an ocean acidification scenario: responses across different levels of biological organization. Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology, 203, 29-38
DOI: 10.1594/pangaea.944162
title: Seawater carbonate chemistry and Cu accumulation and cellular toxicity in the Pacific Oyster Crassostrea gigas

description: Ocean acidification (OA) has been found to increase the release of free Cu2+ in seawater. However, only a handful of studies have investigated the influence of OA on Cu accumulation and cellular toxicity in bivalve species. In this study, Pacific oysters, Crassostrea gigas, were exposed to 25 μg/L Cu2+ at three pH levels (8.1, 7.8 and 7.6) for 14 and 28 days. Physiological and histopathological parameters [(clearance rate (CR), respiration rate (RR), histopathological damage and condition index (CI)), oxidative stress and neurotoxicity biomarkers [superoxide dismutase (SOD) and glutathione transferase (GST) activities, lipid peroxidation (LPO) and acetylcholinesterase (AChE) activity], combined with glycolytic enzyme activities [pyruvate kinase (PK) and hexokinase (HK)] were investigated in C. gigas. The bioconcentration of Cu was increased in soft tissues of Cu-exposed oysters under OA. Our results suggest that both OA and Cu could lead to physiological disturbance, oxidative stress, cellular damage, disturbance in energy metabolism and neurotoxicity in oysters. The inhibited CR, increased glycolytic enzymes activities and decreased CI suggested that the energy metabolism strategy adopted by oysters was not sustainable in the long term. Furthermore, integrated biomarker response (IBR) results found that OA and Cu exposure lead to severe stress to oysters, and co-exposure was the most stressful condition. Results from this study highlight the need to include OA in future environmental assessments of pollutants and hazardous materials to better elucidate the risks of those environmental perturbations.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-05-13.