cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.jf2jb2
title: Occurrence Download

description: A dataset containing 3224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Didelphis Linnaeus, 1758",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3224 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004382-160803222355964/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pfktdt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cistanche ×hybrida (Murray) Beck"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138899-230224095556074/datasets/export for details.
DOI: 10.15468/dl.tk46ga
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is BRA.12_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "TaxonKey is Euryoryzomys macconnelli (Thomas, 1910)",
 "TaxonKey is Euryoryzomys Weksler, Percequillo & Voss, 2006"
 ]
 }
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008187-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfdhfh
title: Occurrence Download

description: A dataset containing 962 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ericameria arborescens (A.Gray) Greene"
 ]
}

 The dataset includes 962 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004382-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5qdthh
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cistanche mongolica Beck"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138906-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yk776g
title: Occurrence Download

description: A dataset containing 1913 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Urocitellus beldingi (Merriam, 1888)"
 ]
}

 The dataset includes 1913 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066095-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3gupq9
title: Occurrence Download

description: A dataset containing 45894 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ricinus communis L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 45894 records from 566 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014070-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nqarsd
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cistanche rosea Baker"
 ]
}

 The dataset includes 31 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138909-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ekwyh3
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-83.7068105000000031 43.0462101999999973, -83.7068105000000031 43.0488176599999974, -83.7068105000000031 43.0506645999999975, -83.7068105000000031 43.0524029099999979, -83.7068105000000031 43.0543584999999993, -83.7068105000000031 43.0555535800000015, -83.7068105000000031 43.0570746000000000, -83.7041991899999971 43.0570746000000000, -83.7021317699999940 43.0570746000000000, -83.7006083999999930 43.0570746000000000, -83.6979969199999942 43.0570746000000000, -83.6952768000000020 43.0570746000000000, -83.6952768000000020 43.0558795199999977, -83.6952768000000020 43.0533806999999982, -83.6952768000000020 43.0516423999999986, -83.6952768000000020 43.0489262999999980, -83.6952768000000020 43.0462101999999973, -83.6973440499999981 43.0462101999999973, -83.6998467199999965 43.0462101999999973, -83.7015877099999983 43.0462101999999973, -83.7039815600000026 43.0462101999999973, -83.7068105000000031 43.0462101999999973))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151053-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dwebzh
title: Occurrence Download

description: A dataset containing 173 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Synallaxis castanea P.L.Sclater, 1856"
 ]
}

 The dataset includes 173 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004383-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5djtvw
title: Occurrence Download

description: A dataset containing 29595 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pionus maximiliani (Kuhl, 1820)",
 "Year 2013-2023"
 ]
}

 The dataset includes 29595 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138889-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jcde2a
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is BOL",
 "OccurrenceStatus is Present",
 "TaxonKey is Digitaria nuda Schumach."
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017808-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rhxz41
title: Occurrence Download

description: A dataset containing 172 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ficus petiolaris Kunth",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 172 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004383-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vbyqdw
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Xenoacremonium palmarum sp. nov., a novel species associated with Phoenix dactylifera in Iran"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198402-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p8956b
title: Occurrence Download

description: A dataset containing 1532 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Culicoides scoticus Downes & Kettle, 1952"
 ]
}

 The dataset includes 1532 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066104-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6s5dde
title: Occurrence Download

description: A dataset containing 197 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cistanche salsa (C.A.Mey.) Beck"
 ]
}

 The dataset includes 197 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138900-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rc8qy2
title: Occurrence Download

description: A dataset containing 111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tachycineta albiventer (Boddaert, 1783)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 111 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004383-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.unp3ea
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cistanche christisonioides Beck"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138892-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9cg8kn
title: Occurrence Download

description: A dataset containing 2144522 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year is 2006",
 "Month is April",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 2144522 records from 1818 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035609-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14364745
title: Brown-Algae.dataset

description: The dataset folder contains essential files required for the execution and testing of the iCulture pipeline. This folder includes:

1. Reference Databases:

• Pfam-A.hmm and associated index files (*.h3f, *.h3i, *.h3m, *.h3p):

• These files constitute the Pfam database used for HMMER annotation of protein sequences.

• The database enables the identification of protein domains and families within query sequences.

2. Input FASTA Files:

 • brown-algae_dataset.fa:

• This FASTA file is generated from the brown algae dataset downloaded from The Phaeoexplorer Project.

• It contains protein sequences from brown algae, formatted for compatibility with the pipeline.

• This file is used as an input for clustering and annotation during the pipeline execution.

3. Sample Input Files:

• These files are provided to facilitate testing and ensure reproducibility of the pipeline results.

 

Purpose:

This directory serves as a centralized location for storing datasets and databases necessary for running the iCulture pipeline, particularly in reproducibility-focused workflows.

Note: If you wish to use the pipeline with custom datasets, replace the example files in this folder with your own, following the required format.
DOI: 10.5281/zenodo.14364746
title: Brown-Algae.dataset

description: The dataset folder contains essential files required for the execution and testing of the iCulture pipeline. This folder includes:

1. Reference Databases:

• Pfam-A.hmm and associated index files (*.h3f, *.h3i, *.h3m, *.h3p):

• These files constitute the Pfam database used for HMMER annotation of protein sequences.

• The database enables the identification of protein domains and families within query sequences.

2. Input FASTA Files:

 • brown-algae_dataset.fa:

• This FASTA file is generated from the brown algae dataset downloaded from The Phaeoexplorer Project.

• It contains protein sequences from brown algae, formatted for compatibility with the pipeline.

• This file is used as an input for clustering and annotation during the pipeline execution.

3. Sample Input Files:

• These files are provided to facilitate testing and ensure reproducibility of the pipeline results.

 

Purpose:

This directory serves as a centralized location for storing datasets and databases necessary for running the iCulture pipeline, particularly in reproducibility-focused workflows.

Note: If you wish to use the pipeline with custom datasets, replace the example files in this folder with your own, following the required format.
DOI: 10.25549/whit-c170-106329
title: Defense housing tract, Marlow-Burns development, Los Angeles, Calif., 1942

description: 3 photographs of houses being constructed, Los Angeles, California,1942 March 16. "La Tijera & Manchester" -- on envelope.
DOI: 10.15468/dl.qzgmb6
title: Occurrence Download

description: A dataset containing 241 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schizocarpum parviflorum Rob. & Greenm.",
 "HasCoordinate is True"
 ]
}

 The dataset includes 241 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005873-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vyke0b
title: Occurrence Download

description: A dataset containing 337 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudogekko Taylor, 1922"
 ]
}

 The dataset includes 337 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094435-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-101078
title: U.C.L.A. vs Oregon State, Los Angeles, Calif., 1939

description: 10 photographs of the football game between the University of California, Los Angeles, and Oregon State University, in the Los Angeles Memorial Coliseum, Los Angeles, California, 1939 November 25. A card with the negatives shows the photographer as Jack. Editor's note: The photographer's job number does not indicate a date.
DOI: 10.15468/dl.65u5uq
title: Occurrence Download

description: A dataset containing 2062 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvia tiliifolia Vahl",
 "HasCoordinate is True"
 ]
}

 The dataset includes 2062 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005872-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-101052
title: Dogs at city pound, Los Angeles, Calif., 1939

description: 6 photographs, 5 of dogs, and one goat, in the local animal shelter, Los Angeles, California, 1939 December.
DOI: 10.15468/dl.gsdgva
title: Occurrence Download

description: A dataset containing 2300 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eutropis Fitzinger, 1843"
 ]
}

 The dataset includes 2300 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094437-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-106796
title: Glazier installing pane of glass, Los Angeles County, Calif., 1942

description: 3 photographs of men installing a glass pane, Los Angeles County, California, 1942 March 20.
DOI: 10.15468/dl.ocamsu
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Otosaurus Gray, 1845"
 ]
}

 The dataset includes 42 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094441-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-69506
title: Mr. Shaw inspecting pavement, Southern California, 1927

description: Photograph of men inspecting construction of house, 2 photographs of billboards, 1 photograph of men inspecting pavement, and 1 photograph of woman sawing wood, Southern California, 1927. "710-13-42; 1927; Walter H. Leimert; Mr. Shaw inspecting pavement" -- on envelope.
DOI: 10.15468/dl.e7so5r
title: Occurrence Download

description: A dataset containing 1075 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinoyscincus Linkem, Diesmos & Brown, 2011"
 ]
}

 The dataset includes 1075 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094443-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-107741
title: U.C.L.A. vs Montana, Los Angeles, Calif., 1939

description: 8 photographs of the football game between the University of California, Los Angeles and the University of Montana at the Los Angeles Memorial Coliseum, Los Angeles, 1939 October 21. Editor's note: the photographer's job number does not indicate a day in October.
DOI: 10.15468/dl.rt9ab5
title: Occurrence Download

description: A dataset containing 3627 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna pallida (Vahl) H.S.Irwin & Barneby",
 "HasCoordinate is True"
 ]
}

 The dataset includes 3627 records from 145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005874-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lpv3n0
title: Occurrence Download

description: A dataset containing 31810 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sphenomorphus Fitzinger, 1843"
 ]
}

 The dataset includes 31810 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094444-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-107256
title: Rat, Los Angeles, Calif., 1939

description: 3 photographs of a rat by itself and taking cheese from a rat trap, Los Angeles, California, 1939 October. Editor's note: Most likely this was done in the Whittington studio. The coloring of the animal indicates that it is a domestic pet.
DOI: 10.15468/dl.pnmb2d
title: Occurrence Download

description: A dataset containing 2330 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tropidophorus Jan, 1865"
 ]
}

 The dataset includes 2330 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094445-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-52234
title: Interior views of Normandie Hotel, Southern California, 1932

description: 5 photographs of interior of Normandie Hotel, Southern California, 1932. "Subject: interior views of hotel; Client: Normandie Hotel; Agency: Jaffe; Original Print Order: 1 ea[ch]; Size: 8x10; Finish: gl[ossy]; Job: 9-11-43; Year: 1932" -- on envelope front. "Operator's Report (Name): Joe; Original Photographs-Size: 4-8x10; Amount: 8.00" -- on envelope back.
DOI: 10.15468/dl.calbcr
title: Occurrence Download

description: A dataset containing 33651 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Varanus Merrem, 1820"
 ]
}

 The dataset includes 33651 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094446-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-107338
title: Planting Easter lily bulbs, USA,1939

description: 6 photographs of Easter lily bulbs and how to pot and grow them, USA, 1939 October.
DOI: 10.15468/dl.vqkzfq
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Rodentia",
 "TaxonKey is Soricidae"
 ]
 },
 "Country is Armenia"
 ]
}

 The dataset includes 75 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094454-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-52230
title: Interior views of Normandie Hotel, Southern California, 1932

description: 5 photographs of interior of Normandie Hotel, Southern California, 1932. "Subject: interior views of hotel; Client: Normandie Hotel; Agency: Jaffe; Original Print Order: 1 ea[ch]; Size: 8x10; Finish: gl[ossy]; Job: 9-11-43; Year: 1932" -- on envelope front. "Operator's Report (Name): Joe; Original Photographs-Size: 4-8x10; Amount: 8.00" -- on envelope back.
DOI: 10.25549/whit-c170-52103
title: The doctor, the May Company, Southern California, 1932

description: 8 photographs of man with pince-nez, Southern California, 1932. "Subject: Holmes Bloomes-Chase; Client: May Co[mpany]; Agency: The Doctor; Job: 10-27-149B; Year: 1932.
DOI: 10.15468/dl.hhtroq
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paepalanthus pallidus Silveira"
 ]
}

 The dataset includes 8 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094455-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-108322
title: UCLA track and field team, Los Angeles, Calif., 1938

description: 14 photographs of the University of California, Los Angeles, track and field team performing various events, Los Angeles, California, 1938 April. Handwritten notes identify players: "Butch Catlin - U.C.L.A - Discus," "Paul Van Alstine - U.C.L.A - Miler," "Clark Shaughnessy - U.C.L.A Javelin," "Carl McBain - U.C.L.A - Hurdles," "Bill Lacefield - U.C.L.A- hurdles," "Bill Lacefield - U.C.L.A - Broad jump," "Thomas Berkley - U.C.L.A - hurdles."
DOI: 10.15468/dl.l5alrg
title: Occurrence Download

description: A dataset containing 17273 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Balaenoptera borealis Lesson, 1828"
 ]
}

 The dataset includes 17273 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002434-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-52105
title: The doctor, the May Company, Southern California, 1932

description: 8 photographs of man with pince-nez, Southern California, 1932. "Subject: Holmes Bloomes-Chase; Client: May Co[mpany]; Agency: The Doctor; Job: 10-27-149B; Year: 1932.