cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27647529.v2
title: Linguistic and Cognitive abilities in Children with Dyslexia: A Comparative Analysis

description: <b>Introduction:</b> Dyslexia is a prevalent learning disorder that significantly affects the child population. It is often accompanied by deficits in language processes, cognition, and executive functioning, all of which are crucial for reading development. Children with dyslexia frequently exhibit difficulties in phonological processing, semantics, morphosyntax, and also in cognitive areas such as working memory, inhibition, planning, and attention. <b>Objective:</b> The primary objective of this study was to compare the linguistic, cognitive, and executive functioning abilities between children diagnosed with dyslexia and those with typical reading development. <b>Methodology:</b> A total of 120 children were selected and divided into two groups: the G-DYSLEXIA group (N=60), consisting of children diagnosed with dyslexia, and the G-CONTROL group (N=60), with typical reading development. Language, cognition, and executive functions were assessed using standardized tests: CELF-5, WISC-V, and ENFEN. Statistical analyses included descriptive statistics, independent samples T-tests, and Chi-square tests to compare the performance between these two groups. <b>Results:</b> The study revealed significant differences between the two groups in all dimensions assessed. Specifically, children with dyslexia showed markedly lower performance in linguistic, cognitive, and executive functioning measures compared to their peers with typical development. <b>Conclusion:</b> Children with dyslexia present a distinct clinical profile characterized by significant difficulties in language processing, cognition, and executive functions. These challenges interfere with their reading acquisition and academic performance, limiting their integration into educational environments and impacting their overall quality of life.
DOI: 10.6084/m9.figshare.27296538.v1
title: Combined Calculation of the Yang-Mills Equation and Einstein Field Equation

description: In this paper, we present a comprehensive analysis and calculation of the combined Yang-Mills equation and Einstein field equation. These equations are two of the fundamental building blocks of modern physics. The Einstein field equation describes gravity as the curvature of spacetime, while the Yang-Mills equation describes the dynamic interactions in quantum field theory. By combining these two equations, we aimed to explore a deeper connection between general relativity and quantum f ield theory. The calculations include symbolic and numerical evaluations of both equations. First, the Einstein f ield equation was expressed in matrix form to compute the curvature of spacetime and its relationship to the distribution of matter. Subsequently, we symbolically computed the Yang-Mills equation to describe the interactions of the fields. These symbolic expressions were then combined to obtain an extended equation that integrates the effects of the Yang-Mills fields on the curvature of spacetime. Through numerical calculations, the terms of both equations were evaluated using real physical constants. The Einstein field equation demonstrated that the cosmological constant has the most significant influence on the curvature of spacetime, while the gravitational constant, due to its minuscule size, has only a minor effect. The Yang-Mills equation provided numerical values representing the interactions of the fields, particularly regarding the dynamics of gluons in the quark-gluon plasma. Combination of the Yang-Mills Equation with the Einstein Field Equation: By combining both equations, we were able to conduct a detailed analysis of the interactions of quantum f ields with the curvature of spacetime. This combination is of particular interest as it could potentially provide new insights into the structure of the universe, dark matter, and the dynamics of particles in extreme gravitational fields.
DOI: 10.6084/m9.figshare.24749457.v2
title: <b>All_Data_Smooth-0.15-5_fish.dat (dataset for N=5 fish)</b>

description: Experimental data for 5 fish originally obtained in<br><br>Papaspyros, V. et al. <i>A biohybrid interaction framework for the integration of </i><i>robots in animal societies</i>. IEEE Access <b>11</b>, 67640–67659 (2023); https://ieeexplore.ieee.org/document/10168905<br>Papaspyros, V., Theraulaz, G., Sire, C. & Mondada, F. <i>Quantifying the biomimicry gap in biohybrid robot-fish pairs</i>. <i>Bioinspir. Biomim.</i> <b>19</b> 046020 (2024); https://iopscience.iop.org/article/10.1088/1748-3190/ad577a<br>We have applied a Gaussian filter to the data of width 0.15 s.<br><br>Each line of the data lists for a given time the X, Y positions, V_X, V_Y velocities, and A_X, A_Y accelerations of the 5 fish, along with the number of the experiment and the segment within this experiment
DOI: 10.6084/m9.figshare.26880619.v1
title: Artifact for "Dynamic Taint Tracking for Modern Java Virtual Machines"

description: This repository contains the artifact for the paper "Dynamic Taint Tracking for Modern Java Virtual Machines". This artifact includes the scripts needed to replicate the evaluation described in the paper, the source code for the Galette dynamic taint tracking system, and the raw experiment data analyzed in the paper. Due to the licensing for MirrorTaint, we were not able to include the materials necessary to reproduce the results collected for MirrorTaint. The purpose of these materials is to facilitate future research into program analysis in the Java Virtual Machine and to allow researchers to independently obtain the empirical results reported in the paper "Dynamic Taint Tracking for Modern Java Virtual Machines".See the included file "README.md" for more information about the files included in this repository.
DOI: 10.6084/m9.figshare.5718880.v1
title: Latin American scientific contribution to ecology

description: ABSTRACT Latin America embodies countries of special interest for ecological studies, given that areas with great value for biodiversity are located within their territories. This highlights the importance of an evaluation of ecological research in the Latin America region. We assessed the scientific participation of Latin American researchers in ecological journals, patterns of international collaboration, and defined the main characteristics of the articles. Although Latin American publications have increased in fourteen years, they accounted up to 9% of publications in Ecology. Brazil leaded the scientific production in Latin America, followed by Argentina and Mexico. In general, Latin American articles represented a low percentage of most journals total publication, with particularly low expression in high impact-factor journals. A half of the Latin American publications had international collaboration. Articles with more than five authors and with international collaboration were the most cited. Descriptive studies, mainly based in old theories, are still majority, suggesting that Ecology is in a developing stage in Latin America.
DOI: 10.6084/m9.figshare.28694411.v1
title: Datasets for CMIP6 downscaling of the historical and future climate

description: Datasets for CMIP6 downscaling of the historical and future climate
DOI: 10.6084/m9.figshare.8150588.v1
title: Fig-7. The development of the glomerulocystic phenotype is progressively associated with loss of primary cilium.

description: Fig-7 Representative pictures of renal cortex from 50 days old Ctr (B) and Dicer cKO mice (A, C, D) stained for α-Acetylated Tubulin (green) and counterstained with Dapi (blue). Primary cilium isnormally found in non-dilating tubules of Dicer cKO mice (A) and in the parietal cells of Ctr mice (B) at P50. However, presence of cilia is decreased progressively in dilating glomeruli (C) until disappearing in frank cysts (D). Bars = 5 μm (A); 10 μm (B-D).
DOI: 10.6084/m9.figshare.11340191.v1
title: RNA-seq transcriptome of Staphylococcus aureus at stationary phase in Tryptic Soy Broth

description: A commensal of the human body, Gram-positive <i>Staphylococcus aureus</i> is also an opportunistic pathogen of increasing concern across the world. Able to grow without oxygen, the bacterium is capable of infecting many types of wounds on different parts of the body. But, chief amongst concerns about the bacterium is its increasing ability to resist a variety of antibiotics. Understanding the physiology of <i>S. aureus</i> provides one avenue for the discovery of drugs able to combat this pathogen, and more fundamentally, provides a glimpse into the biology of this bacterium that has a shared evolution history with humans. In particular, understanding how <i>S. aureus</i> has transformed from a commensal into an opportunistic pathogen with the acquisition of new genetic and physiological repertoire is a fascinating question yet to be fully answered. This contribution hopes to provide some fundamental information that could illuminate the questions posted above. Chiefly, the RNA-seq transcriptome of <i>S. aureus</i> at stationary phase (16 hrs) in Tryptic Soy Broth at 37 <sup>o</sup>C (ArrayExpress accession number: E-GEOD-77242) was analysed by an in-house MATLAB algorithm to yield a transcriptional picture that revealed the importance of DNA and chromosomal maintenance to the cell. Specifically, an ensemble of 0.5 million reads indicated that highly expressed genes were: chromosomal replication initiation protein, lipase, delta-hemolysin, quinol oxidase subunit I, clumping factor, accessory gene regulator protein A, accessory gene regulator protein C, DNA polymerase III subunit beta, quinol oxidase AA3 subunit II, and elongation factor Tu. Overall, understanding the stationary phase gene expression pattern of <i>S. aureus</i> could potentially point us to therapeutic strategies to combat this increasing important human pathogen, that, in some cases, have resisted treatment with our front-line antibiotics. <br><br>
DOI: 10.6084/m9.figshare.28263005.v1
title: Supplementary Material for: A New Era in the Management of Cardiorenal Syndrome: The Importance of Cardiorenal Units.

description: Introduction: Approximately 70% of patients with heart failure (HF) also have kidney disease. Mortality is increased both by cardiorenal syndrome (CRS) and by the exacerbation of other comorbidities. The purpose of this study is to evaluate the clinical performance of patients with CRS who are followed up by the Cardiorenal Unit (CRU).

Methods: We conducted a retrospective observational study of patients referred to the CRU from April 1, 2022, to April 30, 2023. Demographics, laboratory and ultrasonographic tests, and outcomes were evaluated.

Results: Fifty-four patients were seen in the CRU. A total of 45 (83%) and 16 (30%) patients completed follow-up in the CRU at 6 and 12 months, respectively. The mean age was 70 years±1.6, and 65% were men. Almost 50% of patients had ischemic heart disease-related HF. The mean cardiac ejection fraction (EF) was 40%±1.6, and 61% of patients had HF with reduced EF (HFrEF). NYHA functional classes II and III were the most frequent (60% and 35%, respectively). At six months after follow-up, treatment was optimized with sacubitril-valsartan in 33% vs. 49% (p=0.02) and SGLT2 inhibitors in 48% vs. 72% (p=0.008), without significant deterioration in renal function (creatinine: p=0.61; eGFR: p=0.19). There was also a reduction of more than 50% in the number of hospital admissions (p=0.002). A total of 22% required peritoneal dialysis, and 20% required hemodialysis. Ten (19%) patients died, five of them due to cardiovascular (CV) events.

Conclusions: The CRU is vital for the management of complex patients, as it ensures the implementation of medications that reduce CV mortality and decrease the number of hospital admissions in HF.
DOI: 10.6084/m9.figshare.13325456.v1
title: The primer sequences used for real-time quantitative PCR.

description: The primer sequences used for real-time quantitative PCR
DOI: 10.25403/upresearchdata.20348307.v1
title: Time series analysis for maize prices

description: Datasets which include tables and figures after computing the cointegration analysis using the Johansen test for maize prices in Botswana and South Africa. The data showcases the relationship of maize prices between Botswana and South African maize markets. It also includes the time series analysis for maize prices according to grades between the mentioned countries.
DOI: 10.6084/m9.figshare.7556774.v1
title: Anthropogenic Litter Cleanups in Iowa Riparian Areas Reveal the Importance of Near-Stream and Watershed Scale Land Use

description: IowaRiparianTrashFinal.R holds all code used to create figures and analyze data (all other files) for the publication Cowger,Gray, Schultz 2019.<br>ModelStreamsRoadDist.csv holds model input for Road distance variable. <br>ModelStreamsBufferArea.csv holds the buffer area to normalize road distance for model input.<br>AllLandCorrelations.csv has correlations for all land types and litter types.<br>ConfoundingFactorsCorrelation.csv contains confounding correlations. <br>AnnualCleanup.shp are the results from cleanups. <br>ModelOutput.shp is the output from modeled streams. <br>200m.csv - Watershed.csv are zonal statistics results in buffers around surveyed streams.<br>BufferArea.csv is the area of the buffers used in zonal statistics. <br>ModelResults.shp holds a shapefile of the model output for the litter in all Iowa streams.<br>TrashandUrban.csv are original observations of litter in riparian areas. <br>Questions can be directed to Win Cowger (wincowger@gmail.com)<br>
DOI: 10.6084/m9.figshare.13059845.v1
title: Geometry-effects-on-dust-attenuation-curves-with-different-grain-sources-at-high-redshift

description: Dust has been detected in high-redshift ($z&gt;5$) galaxies but its origin is still being debated. Dust production in high-redshift galaxies could be dominated by stellar production or accretion (dust growth) in the interstellar medium. Previous studies have shown that these two dust sources predict different grain size distributions, corresponding to vastly different extinction curves.In this paper, we investigate how the dust attenuation curves predicted by the above extinction curves could be modulated by various radiation transfer effects. To investigate the major effects of dust--stars distribution geometry, we investigate two representative cases: the well-mixed geometry (star and dust are homogeneously mixed) and the two-layer geometry (young stars are more concentrated in the centre) under a spherical symmetry.In both cases, we confirmed that the steepening (by scattering and differential extinctions between young and old stellar populations) and flattening (by the existence of unobscured stellar population) effects drastically modify the attenuation curves. We could reproduce similar attenuation curves even with very different extinction curves. Thus, we conclude that it is difficult to distinguish the dust sources only with attenuation curves. However, if we include information on dust emission and construct the so-called IRX--$\beta$ diagram, a wider area covered by the observational data is more easily explained if dust sources are dominated by dust growth.
DOI: 10.6084/m9.figshare.7726256.v7
title: Dataset and R.code: "Sickness effects on social interactions depend on the type of behaviour and relationship"

description: (1) Dataset "rates_LPS_trials_treatment"<br>date trial subject actor receiver kinship behav rate actor.is.mom receiver.is.mom treatment order experiment.round <br>(2) Dataset "foodsharing_weights"<br>subject.x trial treatment sum prefast.mass mass.in mass.out mass.change pre.injection.mass <br>(3) LPS_Social_network_analysis<br>R-Code includes analysis which are presented in the manuscript:"Effects of sickness and social networks depend on the type of behavior, measure, and relationship"
DOI: 10.6084/m9.figshare.4232093.v1
title: Dataset S1 from A combinatorial approach to angiosperm pollen morphology

description: List of characters used to generate the raw morphospace shown in Figure 2.
DOI: 10.6084/m9.figshare.11317094.v1
title: fungi_CleanData.7z

description: including fungal community
DOI: 10.6084/m9.figshare.13285526.v1
title: Supplementary Material for: Acute Myeloid Leukemia Presenting as a Cardiac Mass

description: Leukemias are the most common childhood malignancy. It is a systemic disease presenting with different signs and symptoms. Extramedullary manifestations, in particular myeloid sarcoma (MS), are extremely rare, often challenging to identify, even more challenging to diagnose, and more than often misdiagnosed owing to its similarity with other solid tumors. We describe a previously healthy boy, aged 4 years, who had a cardiac mass lesion, presumed to be a MS, noted in the right atrium at the time of initial routine echocardiography. The lesion resolved without surgical intervention following the institution of multi-agent chemotherapy.
DOI: 10.25573/data.27984431.v2
title: Illuminating pelagic and benthic biodiversity in deep waters off Puerto Rico: SHIP folder 3 of 6

description: Data from the Nancy Foster Ship NF2202, for the OE FY2021 final report. Number 3 of 6 published datasets. Raw sonar data and calibration files (may also contain screen captures from sonar software.) Additional raw sonar data for the expedition may be found in the 4th of 6 published datasets located at https://doi.org/10.25573/data.27985334<br>
DOI: 10.6084/m9.figshare.25052930.v1
title: Data set, figures and tables

description: The files contain the data set of research articles reviewed for the study in a seperate word file.The files also contain two figures and one table, all included in one word file.
DOI: 10.6084/m9.figshare.28195169.v1
title: Spatial Transcript

description: Dataset nameAbbreviationNo. of spots/cellsNo. of genesNo. of clustersPDAC_AST_PDAC_A428197364Hippocampus 1ST_Hip_1601185099Hippocampus 2ST_Hip_26491835710
DOI: 10.6084/m9.figshare.13173671.v1
title: All nodes in COVID-CDR

description: All nodes in COVID-CDR<br>
DOI: 10.6084/m9.figshare.22689766.v1
title: Supplementary Material for: Gut Microbiome Composition and Its Association with Sleep in Major Psychiatric Disorders

description: Introduction: Sleep disturbances are highly prevalent across most major psychiatric disorders. Alterations in the hypothalamic-pituitary-adrenal axis, neuroimmune mechanisms and circadian rhythm disturbances partially explain this connection. The gut microbiome is also suspected to play a role in sleep regulation and recent studies suggest that certain probiotics, prebiotics, synbiotics and fecal microbiome transplantation can improve sleep quality. Methods: We aimed to assess the relationship between gut-microbiota -composition, psychiatric disorders and sleep quality, in this cross-sectional, cross-disorder study. We recruited 103 participants, 63 patients with psychiatric disorders (Major Depressive Disorder n=31, Bipolar Disorder n=13, Psychotic Disorder n=19) along with 40 healthy controls. Sleep quality was assessed with the Pittsburgh Sleep Quality Index (PSQI). The fecal microbiome was analyzed using 16S rRNA sequencing, and groups were compared based on alpha- and beta-diversity metrics as well as differentially abundant species and genera. Results: A transdiagnostic decrease in alpha diversity and differences in beta diversity indices were observed in psychiatric patients, compared to controls. Correlation analysis of diversity metrics and PSQI score showed no significance in the patient and control groups. However, three species, Ellagibacter isourolithinifaciens, Senegalimassilia faecalis and uncultured Blautia sp. and two genera, Senegalimassilia and uncultured Muribaculaceae genus were differentially abundant in psychiatric patients with good sleep quality (PSQI &gt; 8), compared to poor sleep quality patients (PSQI ≤ 8). Conclusion: In conclusion, this study raises important questions about the interconnection of the gut microbiome and sleep disturbances.
DOI: 10.6084/m9.figshare.25293310.v1
title: Rugby base model

description: This dataset contains the result of fitting a Bayesian model using PyMC to results of the Six Nations Championship.The Six Nations Championship is a yearly rugby competition between Italy, Ireland, Scotland, England, France and Wales. Fifteen games are played each year, representing all combinations of the six teams. This example uses and includes results from 2014 - 2017, comprising 60 total games. It models latent parameters for each team's attack and defense hierarchically, with an extra global parameter for the home field advantage.See https://github.com/arviz-devs/arviz_example_data/blob/main/code/rugby/rugby.ipynb for the whole model specification.
DOI: 10.6084/m9.figshare.25752462.v1
title: Participant-Responses.xlsx

description: I interviewed thirteen women-identifying dancers between the ages of 20 and 37, all of whom have trained at a pre-professional level or have danced professionally and feel that they have experienced a positive shift in their relationship with dance. To understand the shifts in dancers’ self-conceptions over time and measure the effects of their re-exposure to new dance environments, I first needed to identify the specific beliefs they held before their positive re-exposures. At the end of each of my interviews, I asked participants to complete a standardized Eye Movement Desensitization and Reprocessing (EMDR) worksheet. EMDR is a popular psychotherapeutic intervention used to help patients fully process maladaptively stored memories of trauma. EMDR aims to target negative core beliefs and facilitate an adaptive shift. The list of negative cognitions encompasses the overarching core beliefs that have been identified in trauma patients (Shapiro 2017). These core beliefs serve as an apt framework for identifying the deeply held negative beliefs dancers have adopted as a result of their training or professional careers. Cognitions are categorized into four subgroups: Self-Defectiveness, Responsibility, Safety/Vulnerability, and Control/Choice.Participants were prompted to reflect upon the time when their relationship with dance was most emotionally challenging and asked to identify the negative cognitions that they held to be true during that period. In Shapiro's model, an ‘adaptive shift’ – a successful reprocessing – has occurred once the individual resonates with the opposite positive cognition: for example, a shift from the belief that “I am not safe” to “I am safe now.” After having participants identify the negative cognitions that they held to be true during the most emotionally challenging period of their training, they were asked to indicate if they currently perceive the opposite, positive cognitions as core beliefs in the present.<b> </b>Remarkably, the overall rate of adaptive shifts was 69%. Specific cognitions showed very high adaptive shift rates. For example, all nine participants who selected “I am powerless” as a previously held belief reported currently believing the statement “I have choices now.” Other cognition’s shift rates remained relatively low in comparison. Of the thirteen participants who selected “I am not good enough,” only three currently resonate with the belief that “I am good enough.”
DOI: 10.6084/m9.figshare.10031891.v1
title: Supplemental Tables for MN-WGS panel

description: Supplemental Tables for MN-WGS panel