cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1137195.v1
title: Measurement of atmospheric pollutants associated with oil and natural gas exploration and production activity in Pennsylvania’s Allegheny National Forest

description: Oil and natural gas exploration and production (E&P) activities generate emissions from diesel engines, compressor stations, condensate tanks, leaks and venting of natural gas, construction of well pads, and well access roads that can negatively impact air quality on both local and regional scales. A mobile, autonomous air quality monitoring laboratory was constructed to collect measurements of ambient concentrations of pollutants associated with oil and natural gas E&P activities. This air-monitoring laboratory was deployed to the Allegheny National Forest (ANF) in northwestern Pennsylvania for a campaign that resulted in the collection of approximately 7 months of data split between three monitoring locations between July 2010 and June 2011. The three monitoring locations were the Kane Experimental Forest (KEF) area in Elk County, which is downwind of the Sackett oilfield; the Bradford Ranger Station (BRS) in McKean County, which is downwind of a large area of historic oil and gas productivity; and the U.S. Forest Service Hearts Content campground (HC) in Warren County, which is in an area relatively unimpacted by oil and gas development and which therefore yielded background pollutant concentrations in the ANF. Concentrations of criteria pollutants ozone and NO<sub>2</sub> did not vary significantly from site to site; averages were below National Ambient Air Quality Standards. Concentrations of volatile organic compounds (VOCs) associated with oil and natural gas (ethane, propane, butane, pentane) were highly correlated. Applying the conditional probability function (CPF) to the ethane data yielded most probable directions of the sources that were coincident with known location of existing wells and activity. Differences between the two impacted and one background site were difficult to discern, suggesting the that the monitoring laboratory was a great enough distance downwind of active areas to allow for sufficient dispersion with background air such that the localized plumes were not detected. ImplicationsMonitoring of pollutants associated with oil and natural gas exploration and production activity at three sites within the Allegheny National Forest (ANF) showed only slight site-to-site differences even with one site far removed from these activities. However, the impact was evident not in detection of localized plumes but in regional elevated ethane concentrations, as ethane can be considered a tracer species for oil and natural gas activity. The data presented serve as baseline conditions for evaluation of impacts from future development of Marcellus or Utica shale gas reserves.
DOI: 10.6084/m9.figshare.1137142
title: N fixation and Growth of Nostoc punctiforme

description: This dataset contains the N fixation and growth response of Nostoc punctiforme (cyanobacteria) under elevated CO2 conditions
DOI: 10.6084/m9.figshare.1137140
title: Nostoc punctiforme N fixation

description: This dataset is N fixation (by ARA) of Nostoc punctiforme under elevated tempertaure, elevated CO2, and N limited/available conditions over 90 days.
DOI: 10.6084/m9.figshare.1137141
title: Cell densities of Nostoc punctiforme

description: This dataset contains the cell densities of Nostoc punctiforme (cyanobacteria) under elevated temperature, elevated CO2 conditions, and N available / N free conditions
DOI: 10.6084/m9.figshare.1137141.v1
title: Cell densities of Nostoc punctiforme

description: This dataset contains the cell densities of Nostoc punctiforme (cyanobacteria) under elevated temperature, elevated CO2 conditions, and N available / N free conditions
DOI: 10.6084/m9.figshare.1137142.v1
title: N fixation and Growth of Nostoc punctiforme

description: This dataset contains the N fixation and growth response of Nostoc punctiforme (cyanobacteria) under elevated CO2 conditions
DOI: 10.6084/m9.figshare.1137139
title: Nostoc punctiforme growth

description: This data is percent cover of axenic culture growth for Nostoc punctiforme under levated CO2, elevated temperature and N limited/available conditions
DOI: 10.6084/m9.figshare.1137140.v1
title: Nostoc punctiforme N fixation

description: This dataset is N fixation (by ARA) of Nostoc punctiforme under elevated tempertaure, elevated CO2, and N limited/available conditions over 90 days.
DOI: 10.6084/m9.figshare.1137139.v1
title: Nostoc punctiforme growth

description: This data is percent cover of axenic culture growth for Nostoc punctiforme under levated CO2, elevated temperature and N limited/available conditions
DOI: 10.6084/m9.figshare.1137116
title: Growth and development of the barnacle <i>Amphibalanus amphitrite</i>: time and spatially resolved structure and chemistry of the base plate

description: The radial growth and advancement of the adhesive interface to the substratum of many species of acorn barnacles occurs underwater and beneath an opaque, calcified shell. Here, the time-dependent growth processes involving various autofluorescent materials within the interface of live barnacles are imaged for the first time using 3D time-lapse confocal microscopy. Key features of the interface development in the striped barnacle, <i>Amphibalanus</i> (= <i>Balanus</i>) <i>amphitrite</i> were resolved <i>in situ</i> and include advancement of the barnacle/substratum interface, epicuticle membrane development, protein secretion, and calcification. Microscopic and spectroscopic techniques provide <i>ex situ</i> material identification of regions imaged by confocal microscopy. <i>In situ</i> and <i>ex situ</i> analysis of the interface support the hypothesis that barnacle interface development is a complex process coupling sequential, timed secretory events and morphological changes. This results in a multi-layered interface that concomitantly fulfills the roles of strongly adhering to a substratum while permitting continuous molting and radial growth at the periphery.
DOI: 10.6084/m9.figshare.1137116.v2
title: Growth and development of the barnacle <i>Amphibalanus amphitrite</i>: time and spatially resolved structure and chemistry of the base plate

description: The radial growth and advancement of the adhesive interface to the substratum of many species of acorn barnacles occurs underwater and beneath an opaque, calcified shell. Here, the time-dependent growth processes involving various autofluorescent materials within the interface of live barnacles are imaged for the first time using 3D time-lapse confocal microscopy. Key features of the interface development in the striped barnacle, <i>Amphibalanus</i> (= <i>Balanus</i>) <i>amphitrite</i> were resolved <i>in situ</i> and include advancement of the barnacle/substratum interface, epicuticle membrane development, protein secretion, and calcification. Microscopic and spectroscopic techniques provide <i>ex situ</i> material identification of regions imaged by confocal microscopy. <i>In situ</i> and <i>ex situ</i> analysis of the interface support the hypothesis that barnacle interface development is a complex process coupling sequential, timed secretory events and morphological changes. This results in a multi-layered interface that concomitantly fulfills the roles of strongly adhering to a substratum while permitting continuous molting and radial growth at the periphery.
DOI: 10.6084/m9.figshare.1137116.v1
title: Growth and development of the barnacle <i>Amphibalanus amphitrite</i>: time and spatially resolved structure and chemistry of the base plate

description: The radial growth and advancement of the adhesive interface to the substratum of many species of acorn barnacles occurs underwater and beneath an opaque, calcified shell. Here, the time-dependent growth processes involving various autofluorescent materials within the interface of live barnacles are imaged for the first time using 3D time-lapse confocal microscopy. Key features of the interface development in the striped barnacle, <i>Amphibalanus</i> (= <i>Balanus</i>) <i>amphitrite</i> were resolved <i>in situ</i> and include advancement of the barnacle/substratum interface, epicuticle membrane development, protein secretion, and calcification. Microscopic and spectroscopic techniques provide <i>ex situ</i> material identification of regions imaged by confocal microscopy. <i>In situ</i> and <i>ex situ</i> analysis of the interface support the hypothesis that barnacle interface development is a complex process coupling sequential, timed secretory events and morphological changes. This results in a multi-layered interface that concomitantly fulfills the roles of strongly adhering to a substratum while permitting continuous molting and radial growth at the periphery.
DOI: 10.6084/m9.figshare.1137080
title: Increased BM plasma level of soluble CD30 in AA

description: Figure S1. Representative FCM analyses showed the kinetics of cell surface expression of CD30 by CD3+CD8+ T cells and CD3+CD8- T cells after allogeneic stimulation. BM CD3+ T cells from healthy individuals and SAA patients were co-cultured with mitomycin C treated allogenetic mononuclear cells for a total of 7 days. Figure S2. CD30 positive T cells were mainly contained in the cell population with larger FSC and SSC. Representative FCM analyses showed the cell surface expression of CD30 by T cells at day 4 after allogeneic stimulation. Figure S3. CsA inhibited the expression of CD30 by allogeneic stimulated T cells. Representative FCM analyses showed the cell surface expression of CD30 by T cells at day 4 after allogeneic stimulation. Figure S4. Correlation of BM plasma sCD30 levels with baseline RET in SAA and VSAA patients (n=19). Table S1. Patients’ characteristics.
DOI: 10.6084/m9.figshare.1137080.v1
title: Increased BM plasma level of soluble CD30 in AA

description: Data include ELISA results of soluble CD30 in plasma and cell culture supernatant, allogeneic-stimulated expression and release of CD30 by T cells (with/without CsA), and the ELISA result of IFN-gamma levels in plasma and in cell culture supernatant.
DOI: 10.6084/m9.figshare.1137080.v2
title: Increased BM plasma level of soluble CD30 in AA

description: Data includes allogeneic-stimulated expression of CD30 by T cells (with/without CsA)
DOI: 10.6084/m9.figshare.1137080.v4
title: Increased BM plasma level of soluble CD30 in AA

description: Figure S1. Representative FCM analyses showed the kinetics of cell surface expression of CD30 by CD3+CD8+ T cells and CD3+CD8- T cells after allogeneic stimulation. BM CD3+ T cells from healthy individuals and SAA patients were co-cultured with mitomycin C treated allogenetic mononuclear cells for a total of 7 days. Figure S2. CD30 positive T cells were mainly contained in the cell population with larger FSC and SSC. Representative FCM analyses showed the cell surface expression of CD30 by T cells at day 4 after allogeneic stimulation. Figure S3. CsA inhibited the expression of CD30 by allogeneic stimulated T cells. Representative FCM analyses showed the cell surface expression of CD30 by T cells at day 4 after allogeneic stimulation. Figure S4. Correlation of BM plasma sCD30 levels with baseline RET in SAA and VSAA patients (n=19). Table S1. Patients’ characteristics.
DOI: 10.6084/m9.figshare.1137080.v3
title: Increased BM plasma level of soluble CD30 in AA

description: BM CD3+ T cells from healthy individuals and SAA patients were co-cultured with mitomycin C treated allogenetic mononuclear cells for a total of 7 days, kinetics of cell surface expression of CD30 by CD3+CD8+ T cells and CD3+CD8- T cells were determined by FCM.
DOI: 10.6084/m9.figshare.1136101
title: Canopus, Carina and Tucana-Horologium

description: Following a discussion from Eric Mamajek (see 1st URL below), these figures show the XYZ and UVW positions of Canopus (red sphere with its projections), compared to the Carina and Tucana-Horologium bona fide members (green spheres with their projections) and the spatial / kinematic models of BANYAN II (orange ellipsoid and its projects; see 2nd link below). The age of Canopus is estimated at ~ 27 Myr, which is consistent with both moving groups, however the spatial - kinematic match is not good, at least according to those models.
DOI: 10.6084/m9.figshare.1136100
title: Plos One Data

description: Data for the paper: Epibatidine Blocks Eye-specific Segregation in Ferret Dorsal Lateral Geniculate Nucleus During Stage III Retinal Waves, in Plos One.
DOI: 10.6084/m9.figshare.1136100.v1
title: Plos One Data

description: Data for the paper: Epibatidine Blocks Eye-specific Segregation in Ferret Dorsal Lateral Geniculate Nucleus During Stage III Retinal Waves, in Plos One.
DOI: 10.6084/m9.figshare.1136101.v1
title: Canopus, Carina and Tucana-Horologium

description: Following a discussion from Eric Mamajek (see 1st URL below), these figures show the XYZ and UVW positions of Canopus (red sphere with its projections), compared to the Carina and Tucana-Horologium bona fide members (green spheres with their projections) and the spatial / kinematic models of BANYAN II (orange ellipsoid and its projects; see 2nd link below). The age of Canopus is estimated at ~ 27 Myr, which is consistent with both moving groups, however the spatial - kinematic match is not good, at least according to those models.
DOI: 10.6084/m9.figshare.1136089
title: Purdue-FTA- database

description: Purdue-FTA database - is a collection of enrollment decisions from four datasets collected in the International Center for Biometric Research. For more information about the dataset, please see "Computational Methods in Biometric Authentication: Statistical Methods for Performance Evaluation", and more information is available from ICBR website, and data collected from Shimon Modi's dissertation.
DOI: 10.6084/m9.figshare.1136067
title: Graphml file of the resource-immune-parasite network (severe aggregation of node names)

description: One version of the network produced by Vincent Labatut's R code.
DOI: 10.6084/m9.figshare.1136065
title: Graphml file of the resource-immune-parasite network (aggregation corresponding to the main manuscript in Griffiths et al. 2014)

description: One version of the network produced by Vincent Labatut's R code.
DOI: 10.6084/m9.figshare.1136089.v1
title: Purdue-FTA- database

description: Purdue-FTA database - is a collection of enrollment decisions from four datasets collected in the International Center for Biometric Research. For more information about the dataset, please see "Computational Methods in Biometric Authentication: Statistical Methods for Performance Evaluation", and more information is available from ICBR website, and data collected from Shimon Modi's dissertation.
DOI: 10.6084/m9.figshare.1136064
title: Graphml file of the resource-immune-parasite network (no aggregation of node names)

description: One version of the network produced by Vincent Labatut's R code.
DOI: 10.6084/m9.figshare.1136066
title: Graphml file of the resource-immune-parasite network (moderate aggregation of node names)

description: One version of the network produced by Vincent Labatut's R code.
DOI: 10.6084/m9.figshare.1136064.v1
title: Graphml file of the resource-immune-parasite network (no aggregation of node names)

description: One version of the network produced by Vincent Labatut's R code.
DOI: 10.6084/m9.figshare.1136060
title: Graphml file of the parasite-parasite network (no aggregation of node names)

description: One version of the network produced by Vincent Labatut's R code.
DOI: 10.6084/m9.figshare.1136061
title: Graphml file of the parasite-parasite network (aggregation corresponding to the main manuscript in Griffiths et al. 2014)

description: One version of the network produced by Vincent Labatut's R code.
DOI: 10.6084/m9.figshare.1136062
title: Graphml file of the parasite-parasite network (moderate aggregation of node names)

description: One version of the network produced by Vincent Labatut's R code.
DOI: 10.6084/m9.figshare.1136065.v1
title: Graphml file of the resource-immune-parasite network (aggregation corresponding to the main manuscript in Griffiths et al. 2014)

description: One version of the network produced by Vincent Labatut's R code.
DOI: 10.6084/m9.figshare.1136059
title: Code to convert csv files of network into ml files for versions of the network

description: This code was kindly developed by Vincent Labatut of The Galatasaray University. The R script processes the other Figshare files to produce eight graphml files of the network. It creates four versions of the parasite-parasite network and four versions of the resource-parasite-immune network analysed in Griffiths et al. 2014. The parasite-parasite network includes reported effects on morbidity reported in Griffiths et al. 2011. The four versions of the network range from no aggregation of node names (0) up to severe aggregation (3). Thank you for developing and sharing this Vincent!
DOI: 10.6084/m9.figshare.1136059.v1
title: Code to convert csv files of network into ml files for versions of the network

description: This code was kindly developed by Vincent Labatut of The Galatasaray University. The R script processes the other Figshare files to produce eight graphml files of the network. It creates four versions of the parasite-parasite network and four versions of the resource-parasite-immune network analysed in Griffiths et al. 2014. The parasite-parasite network includes reported effects on morbidity reported in Griffiths et al. 2011. The four versions of the network range from no aggregation of node names (0) up to severe aggregation (3). Thank you for developing and sharing this Vincent!
DOI: 10.6084/m9.figshare.1136061.v1
title: Graphml file of the parasite-parasite network (aggregation corresponding to the main manuscript in Griffiths et al. 2014)

description: One version of the network produced by Vincent Labatut's R code.
DOI: 10.6084/m9.figshare.1136062.v1
title: Graphml file of the parasite-parasite network (moderate aggregation of node names)

description: One version of the network produced by Vincent Labatut's R code.
DOI: 10.6084/m9.figshare.1136063
title: Graphml file of the parasite-parasite network (severe aggregation of node names)

description: One version of the network produced by Vincent Labatut's R code.
DOI: 10.6084/m9.figshare.1136057
title: Data accompanying Timmins-Schiffman et al. 2013

description: These 3 files are the source data for Table 1 and Figures 3, 4, and 5 in Timmins-Schiffman et al. 2013 Elevated pCO2 causes developmental delay in early larval Pacific oysters, Crassostrea gigas, published in Marine Biology (doi 10.1007/s00227-012-2055-x). Table 1: Salinity, total alkalinity (AT), and spectrophotometric (spec) pH are point measurements taken each day. Partial pressure of CO2, carbonate saturation, and carbonate ion concentration were calculated from spec pH and AT. Mean and standard deviation (u ± SD) for the following parameters are given for all 3 days: temperature, salinity, AT, pH, pCO2, and carbonate ion concentration. Data for Fig 3: Number of larvae scored as calcified, uncalcified, or partially calcified are given for different replicates (jars) for the two time points (24 and 72 hours post-fertilization) and different pCO2 conditions (400, 700, or 1000 µatm). Data for Figs 4 and 5: Each cell represents a measurement for an individual larva. Column headers are formatted [measurement type][pCO2].[day measurement taken], i.e. height400.day1 contains data for larval shell height from the 400 uatm treatment on day 1 post-fertilization. Data are for shell height and depth, pCO2 of approximately 400, 700, and 1000 uatm, and days 1 and 3 post-fertilization. Data for Fig 6: Data were plotted for individual oysters with measurements of both shell height and hinge length. Columns have data for day post-fertilization, pCO2 (in uatm), DayTreatment combined factor, hinge length, and shell height. Each row contains data for a single oyster larva.
DOI: 10.6084/m9.figshare.1136063.v1
title: Graphml file of the parasite-parasite network (severe aggregation of node names)

description: One version of the network produced by Vincent Labatut's R code.
DOI: 10.6084/m9.figshare.1136016
title: Extension and magmatism in the Cerocahui basin, northern Sierra Madre Occidental, western Chihuahua, Mexico

description: The Sierra Madre Occidental of northwestern Mexico is the biggest silicic large igneous province of the Cenozoic, yet very little is known about its geology due to difficulties of access to much of this region. This study presents geologic maps and two new U-Pb zircon laser ablation inductively coupled plasma mass spectrometry ages from the Cerocahui basin, a previously unmapped and undated ~25 km-long by ~12 km-wide half-graben along the western edge of the relatively unextended core of the northern Sierra Madre Occidental silicic large igneous province. Five stratigraphic units are defined in the study area: (1) undated welded to non-welded silicic ignimbrites that underlie the rocks of the Cerocahui basin, likely correlative to Oligocene-age ignimbrites to the east and west; (2) the ca. 27.5–26 Ma Bahuichivo volcanics, comprising mafic-intermediate lavas and subvolcanic intrusions in the Cerocahui basin; (3) alluvial fan deposits and interbedded distal non-welded silicic ignimbrites of the Cerocahui clastic unit; (4) basalt lavas erupted into the Cerocahui basin following alluvial deposition; and (5) silicic hypabyssal intrusions emplaced along the eastern margin of the basin and to a lesser degree within the basin deposits.The main geologic structures in the Cerocahui basin and surrounding region are NNW-trending normal faults, with the basin bounded on the east by the syndepositional W-dipping Bahuichivo–Bachamichi and Pañales faults. Evidence of syndepositional extension in the half-graben (e.g. fanning dips, unconformities, coarsening of clastic deposits toward basin-bounding faults) indicates that normal faulting was active during deposition in the Cerocahui basin (Bahuichivo volcanics, Cerocahui clastic unit, and basalt lavas), and may have been active earlier based on regional correlations.The rocks in the Cerocahui basin and adjacent areas record: (1) the eruption of silicic outflow ignimbrite sheets, likely erupted from caldera sources to the east during the early Oligocene pulse of the mid-Cenozoic ignimbrite flare-up, mostly prior to synextensional deposition in the Cerocahui basin (pre-27.5 Ma); (2) synextensional late Oligocene mafic-intermediate composition magmatism and alluvial fan sedimentation (ca. 27.5–24.5 Ma), which occurred during the lull between the Early Oligocene and early Miocene pulses of the ignimbrite flare-up; and (3) post-extensional emplacement of silicic hypabyssal intrusions along pre-existing normal faults, likely during the early Miocene pulse of the ignimbrite flare-up (younger than ca. 24.5 Ma). The timing of extensional faulting and magmatism in the Cerocahui basin and surrounding area generally coincides with previous models of regional-scale middle Eocene to early Miocene southwestward migration of active volcanism and crustal extension in the northern Sierra Madre Occidental controlled by post-late Eocene (ca. 40 Ma) rollback/fallback of the subducted Farallon slab.