cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.0t667/1
title: M. euphorbiae fitness and parasitism resistance data

description: Sheets 1 and 2 give the results of performance (fitness) assays on 10 clonal lines of M. euphorbiae. 'Rm' is the intrinsic rate of population increase, given by 0.738(ln Md) / T where T is the pre-reproductive period and Md is the number of offspring produced in the time equivalent to the pre-reproductive period. 'Event' indicates whether an individual was alive (0) or dead (1) at a time equal to twice the pre-reproductive period. Sheets 3 and 4 give the data for the host acceptability and suitability experiments, where 'Count' is the number of aphids in which an egg or larva was found, or the number of mummies formed, for that replicate.
DOI: 10.5061/dryad.1719f/2
title: .map file for polar bears of the Hudson Bay region

description: The .map file contains information about the corresponding SNPs to the .ped file. Each line represents a single marker, see README file for the column descriptions.
DOI: 10.5061/dryad.18tg7/1
title: rawdata_scandinavia.ngsfilter

description: ngsfilter file for scandinavian rawdata analysis
DOI: 10.5061/dryad.18tg7/3
title: obitools_script

description: Scripts to filter raw sequence data and perform conversion to table
DOI: 10.5061/dryad.18tg7/4
title: R_python_scripts

description: R and python scripts to extract genotypes from tabular data file
DOI: 10.5061/dryad.18tg7/5
title: Readme
DOI: 10.5061/dryad.18tg7/6
title: filtereddata_references

description: assembled and filtered fastq sequences from reference samples
DOI: 10.5061/dryad.3338c/1
title: SATdata_Abuse

description: This file contains the fMRI data (DICOM images) for the abuse group.
DOI: 10.5061/dryad.3338c/2
title: SATdata_HC

description: This file contains the fMRI data (DICOM images) for the healthy control group.
DOI: 10.5061/dryad.3338c/3
title: SATdata_PC

description: This file contains the fMRI data (DICOM images) for the psychiatric control group.
DOI: 10.5061/dryad.53c84/1
title: behav_dataset
DOI: 10.5061/dryad.578j2/1
title: Coronis and reanalysis of old stomatopod kinematic data

description: Kinematic data from Coronis scolopendra (newly reported in this study) and compiled data from previous kinematic studies of mantis shrimp
DOI: 10.5061/dryad.61dr5.1
title: Data from: Avian cephalic vascular anatomy, sites of thermal exchange, and the rete ophthalmicum
DOI: 10.5061/dryad.61dr5.2/2.2
title: CT scan data of wild turkey, Meleagris gallopavo OUVC 10610

description: This zip file contains DICOM images from an x-ray microcomputed tomography (µCT) scan of an injected Meleagris gallopavo (OUVC 10610). The arteries and veins were injected with a latex and barium solution and scanned on a GE eXplore Locus in vivo Small Animal MicroCT scanner (90µm slice thickness at 80kV and 450 µA) at the Ohio University µCT Scanning Facility.
DOI: 10.5061/dryad.61dr5.2/3.2
title: CT scan data of wild double-crested cormorant, Phalacrocorax auritus OUVC 10644

description: This zip file contains DICOM images from an x-ray microcomputed tomography (µCT) scan of an injected Phalacrocorax auritus (OUVC 10644). The veins were injected with a latex and barium solution and scanned on a GE eXplore Locus in vivo Small Animal MicroCT scanner (90µm slice thickness at 80kV and 450 µA) at the Ohio University µCT Scanning Facility.
DOI: 10.5061/dryad.61dr5.2/4.2
title: CT scan data of wild double-crested cormorant, Phalacrocorax auritus OUVC 10645

description: This zip file contains DICOM images from an x-ray microcomputed tomography (µCT) scan of an injected Phalacrocorax auritus (OUVC 10645). The arteries were injected with a latex and barium solution and scanned on a GE eXplore Locus in vivo Small Animal MicroCT scanner (90µm slice thickness at 80kV and 450 µA) at the Ohio University µCT Scanning Facility.
DOI: 10.5061/dryad.61dr5.2/5.2
title: 3D-PDF of wild turkey, Meleagris gallopavo
DOI: 10.5061/dryad.6200r/1
title: Table Path analysis

description: The table contains averaged data of life history traits (lay date, clutch size, number fledglings and nestling mass) as well as the quantified environmental factors (humidity, temperature, light and noise) per female (Bird ID) and Year. Averaged data for lay date and clutch size on plot level were used to calculate indirect effects of the path models.
DOI: 10.5061/dryad.6200r/2
title: Table Environment

description: The table contains data of the quantified environmental factors. Temperature, humidity and light are averaged per daily time interval between 22h00 and 04h00 and noise was averaged over 24 hour time interval.
DOI: 10.5061/dryad.6rg07/1
title: Survival data

description: Predation rates on dough stimuli (see README.txt)
DOI: 10.5061/dryad.6rg07/2
title: Colour data

description: Avian visual model responses (see README.txt)
DOI: 10.5061/dryad.92j80/1
title: Compared cutting ability
DOI: 10.5061/dryad.92j80/2
title: Wear cutting ability
DOI: 10.5061/dryad.ch110/1
title: Analysis scripts and statistic data files

description: In this repository you will find the analysis scripts as well as the group statistic data that were used to generate the figures in the manuscript. All files are Matlab based script (*.m) or data (*.mat) files.
DOI: 10.5061/dryad.db78g.2
title: Data from: Taxon-rich phylogenomic analyses resolve the eukaryotic tree of life and reveal the power of subsampling by sites
DOI: 10.5061/dryad.db78g.2/1.2
title: Supplemental_Data

description: Includes Table S3:Monophyly of subclades, S4:Subsampling results and tree data as newick strings
DOI: 10.5061/dryad.db78g.2/2.2
title: Table_S1

description: Table_S1.xlsx: Taxon source and codeTaxa are listed by major clade, and information is given about the source of the data (e.g. OrthoMCL, Genbank, Moore Transcriptome Project).  Codes used throughout the study are given. Taxa in red are in Phylobayes analysis but removed from other analyses
DOI: 10.5061/dryad.db78g.2/3.2
title: Table_S2

description: Table_S2.xlsx: Presence/Absence of genes x taxaGenes present by taxon.  1 = present; 0 = absent.  Genes are given by OG name (OrthoMCL) and are marked with an * if a member of the 150 most even gene dataset and with a ^ if identified as a gene affected by EGT
DOI: 10.5061/dryad.db78g.2/4.2
title: All_1554

description: Alignment file; 1554 genes; eukaryotes, bacteria and archaea.
DOI: 10.5061/dryad.db78g.2/5.2
title: Euk_1554

description: Alignment file; 1554 genes; eukaryotes
DOI: 10.5061/dryad.dp3js/1
title: Squamata

description: All included files are described in README.txt file attached.
DOI: 10.5061/dryad.dp3js/2
title: README

description: Contains descriptions of all data and results files, along with software used, and links to source code.
DOI: 10.5061/dryad.fh517/1
title: Data base Ebensperger et al

description: Full field collected data base
DOI: 10.5061/dryad.j00p6/3
title: AugustMorphotypeData

description: Site-by-species matrix for August samples. First column is the individual tank identification code, with the first letters representing a site identifier, the second letter representing the matrix type (O=open, HW=hardwood, P=pine), and the last letter representing the litter type (P=pine, M=maple, S=sedge).
DOI: 10.5061/dryad.j00p6/4
title: ProducerData

description: Periphyton and phytoplankton abundance data as measured by spectroscopic analysis.  First column is the individual tank identification code, with the first letters representing a site identifier, the second letter representing the matrix type (O=open, HW=hardwood, P=pine), and the last letter representing the litter type (P=pine, M=maple, S=sedge).
DOI: 10.5061/dryad.j00p6/5
title: Light(Lux)

description: Light levels measured in lux.  First column is the individual tank identification code, with the first letters representing a site identifier, the second letter representing the matrix type (O=open, HW=hardwood, P=pine), and the last letter representing the litter type (P=pine, M=maple, S=sedge).
DOI: 10.5061/dryad.k6j0h/5
title: S1 fungus_CROP_R_script_rarefied

description: The HTML outputs of the R scripts using the rarefied CROP datasets
DOI: 10.5061/dryad.k6j0h/6
title: S1 fungus_uclust_R_script_nonrarefied

description: The HTML outputs of the R scripts using the non-rarefied UCLUST datasets
DOI: 10.5061/dryad.k6j0h/7
title: S1 fungus_uclust_R_script_rarefied

description: The HTML outputs of the R scripts using the rarefied UCLUST datasets
DOI: 10.5061/dryad.k6q68/3
title: transitions

description: Contains raw data on sunset and sunrise times (so called 'transitions') used to estimate longitude, movement and stationary periods. The file shows data of 27 solar geolocator-loggers deployed on pied flycatchers, Ficedula hypoleuca, in Drenthe The Netherlands (Longitude: 6.378, Latitude: 52.820) in 2013, using Intigeo-W50 made by Migrate Technology Ltd logger. Data was processed using the program BASTrack.
DOI: 10.5061/dryad.m35k6/35
title: ModelSel_HAFL_2012_Detection

description: AIC model selection table and associated coefficients for Hammond's flycatcher 2012 for all detection models. Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/36
title: ModelSel_HAFL_2013_Detection

description: AIC model selection table and associated coefficients for Hammond's flycatcher 2013 for all detection models. Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/37
title: ModelSel_HETH_2012_Detection

description: AIC model selection table and associated coefficients for hermit thrush 2012 for all detection models. Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/38
title: ModelSel_HETH_2013_Detection

description: AIC model selection table and associated coefficients for hermit thrush 2013 for all detection models. Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/39
title: ModelSel_HEWA_2012_Detection

description: AIC model selection table and associated coefficients for hermit warbler 2012 for all detection models. Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/40
title: ModelSel_HEWA_2013_Detection

description: AIC model selection table and associated coefficients for hermit warbler 2013 for all detection models. Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/41
title: ModelSel_ORJU_2012_Detection

description: AIC model selection table and associated coefficients for dark-eyed (Oregon) junco 2012 for all detection models. Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/42
title: ModelSel_ORJU_2013_Detection

description: AIC model selection table and associated coefficients for dark-eyed (Oregon) junco 2013 for all detection models. Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.mt64k.2
title: Data from: Vascular patterns in the heads of crocodilians: blood vessels and sites of thermal exchange
DOI: 10.5061/dryad.mt64k.2/1.2
title: CT scan data of American alligator, Alligator mississippiensis (OUVC 9757)

description: This zip file contains DICOM images from an x-ray microcomputed tomography (µCT) scan of an injected Alligator mississippiensis (OUVC 9757). The veins (with overflow into the arteries) were injected with a latex and barium solution and scanned on a GE eXplore Locus in vivo Small Animal MicroCT scanner (90µm slice thickness at 80kV and 450 µA) at the Ohio University µCT Scanning Facility.
DOI: 10.5061/dryad.mt64k.2/2.2
title: CT scan data of American alligator, Alligator mississippiensis (OUVC 10387)

description: This zip file contains DICOM images from an x-ray microcomputed tomography (µCT) scan of an injected Alligator mississippiensis (OUVC 10387). The veins were injected with a latex and barium solution and scanned on a GE eXplore Locus in vivo Small Animal MicroCT scanner (90µm slice thickness at 80kV and 450 µA) at the Ohio University µCT Scanning Facility.
DOI: 10.5061/dryad.mt64k.2/3.2
title: CT scan data of American alligator, Alligator mississippiensis (OUVC 10597)

description: This zip file contains DICOM images from an x-ray microcomputed tomography (µCT) scan of an injected Alligator mississippiensis (OUVC 10597). The arteries and veins were injected with a latex and barium solution and scanned on a GE eXplore Locus in vivo Small Animal MicroCT scanner (90µm slice thickness at 80kV and 450 µA) at the Ohio University µCT Scanning Facility.
DOI: 10.5061/dryad.n2s14/1
title: Data of competition assays and fitness and monoculture assays
DOI: 10.5061/dryad.r5m20/1
title: Niu ,He& Lechowiczl_Data_JAE

description: Collected in the field; Site abbreviation: AZ=AaZi, WLK=WaLaKa,HY=HongYuan,QH=QingHai, NQ=NaQu
DOI: 10.5061/dryad.rn539/1
title: Table 1_Re

description: Cnidae types and sizes in different tissue sections of the holotype of Sphenopus exilis sp. n.
DOI: 10.5061/dryad.rn539/2
title: Fig. 2 re2

description: olyps of Sphenopus exilis sp. n. A. In situ image of S. exilis sp. n., polyp with no black patterns, from the type locality in Kin Bay, Okinawa, Japan on 29 October 2011. B. Polyps of NSMT-Co1576 & NSMT-Co1577 from Kin Bay, Okinawa-jima Island, Japan. The white circle points to the holotype. C. In situ image of NSMT-Co1578 from Oura Bay, Okinawa-jima Island, Japan, on 13 November 2012. Faint black patterns and bands appear on the oral disc and the tentacles. D. Polyps of lot number NSMT-Co1578 showing phenotypic variation with black stripes on the upper part of the polyps. Scale bars: 1 cm.
DOI: 10.5061/dryad.rn539/3
title: Fig. 3

description: Morphological features of Sphenopus exilis sp. n. A. Cross section of holotype NSMT-Co1576 through the actinopharynx showing the mesenterial arrangement and dense sand encrustations. B. Well-developed mesogleal sphincter muscles visible on a hand-cut longitudinal section of the holotype NSMT-Co1576. C. Comparison of polyp shape between S. exilis sp. n. NSMT-Co1577 and S. marsupialis (from Brunei, refer to Reimer et al. 2012).
DOI: 10.5061/dryad.rn539/4
title: Fig4

description: Maximum likelihood tree of nuclear internal transcribed spacer of ribosomal DNA (ITS-rDNA) region for newly obtained sequences from Sphenopus exilis sp. n. in this study along with previously published GenBank sequences of family Sphenopidae. Bootstrap values of ML &gt;60% are shown at respective nodes. Nodes supported by Bayesian posterior probabilities &gt;0.90 are marked with asterisks. Species names’ of sequences obtained from GenBank follow with accession numbers. The subtree shown in b) shows only the clade formed by genus Sphenopus, Palythoa mizigama and P. umbrosa, delineated by the gray square in a).
DOI: 10.5061/dryad.s67kg/1
title: Siring success

description: Siring success and its components.
DOI: 10.5061/dryad.s67kg/2
title: Aggression

description: Fertilization routes and aggression
DOI: 10.5061/dryad.s67kg/3
title: Exploration

description: Exploration and fertilization routes
DOI: 10.5061/dryad.sb7m2/1
title: Noctilionoid bats

description: This data package contains information on Noctilionoidea bats captured at 10 study sites across Bolivia. Taxonomic names and foraging guilds following Kalko (1997), Sampaio et al. (2003) and Aguirre (2007) are described for each species. The package includes data from published sources and unpublished theses. Authors of the theses have been included as coauthors of the data package. If you use this data please cite the data package, the original paper (Aguirre et al. 2016, PLOSone) and the published sources detailed in the Metadata.
DOI: 10.5061/dryad.v1jr7/3
title: VIC

description: Phytophthora cinnamomi records used in model from Victoria, Australia
DOI: 10.5061/dryad.v1jr7/4
title: TAS

description: Phytophthora cinnamomi records used in model from Tasmania, Australia
DOI: 10.5061/dryad.v1jr7/5
title: NSW

description: New South Wales, Australia
DOI: 10.5061/dryad.v1jr7/6
title: AUSTRALIA ADDP

description: data used from Australian Plant Pest Database
DOI: 10.5061/dryad.0k1r0/1
title: 2b-RAD STRUCTURE alignment of Ophionotus victoriae (Meyer)

description: 1,999 bi-allelic SNP loci using Dr. Eli Meyer's (Oregon State University) scripts which can be found at (https://github.com/Eli-Meyer)
DOI: 10.5061/dryad.0k1r0/2
title: 2b-RAD STRUCTURE alignment of Ophionotus victoriae (STACKS)

description: 1,739 bi-allelic SNP loci using using the STACKS software package.
DOI: 10.5061/dryad.0k1r0/3
title: Ophionotus_cleaned_fasta

description: Compressed fasta files that have been screened for quality, size and presence of the AlfI restriction site. This data is ready for further processing through STACKS software, Eli Meyer's (Oregon State University) scripts (https://github.com/Eli-Meyer) or through custom software.
DOI: 10.5061/dryad.17s38/1
title: Raw fitness data

description: Fitness are provided for the ancestral virus as well a to the two replicates of each evolutionary lineage relative to the 01001 genotype at the local fitness maximum.
DOI: 10.5061/dryad.17s38/2
title: Summary of mutations found on each lineage

description: Page 1 contains the nucleotide substitutions observed on each evolved lineage.  Page 2 contains a schematic representation of mutations *fixed* on each lineage.  Page 3 contains the corresponding amino acid substitutions.
DOI: 10.5061/dryad.18tg7/10
title: rawdata_scandinavia_R2

description: Raw fastq paired-end 2 sequences from scandinavian bear samples
DOI: 10.5061/dryad.18tg7/7
title: rawdata_pyrenees_R1

description: Raw fastq paired-end 1 sequences from pyrenean bear samples
DOI: 10.5061/dryad.18tg7/8
title: rawdata_pyrenees_R2

description: Raw fastq paired-end 2 sequences from pyrenean bear samples
DOI: 10.5061/dryad.18tg7/9
title: rawdata_scandinavia_R1

description: Raw fastq paired-end 1 sequences from scandinavian bear samples
DOI: 10.5061/dryad.34c1r/1
title: Modelled vascular plant species richness of South Africa and neighbouring territories

description: A raster in GeoTiff format at 0.0417° resolution (coordinatereference systems EPSG: 4326) of vascular plant species richness in South Africa, Swaziland and Lesotho, predicted from the full boosted regression tree model. The modelled output includes prediction to areas for which species richness was not included in the data used for model construction (Swaziland and Lesotho). Species richness is expressed as counts per quarter degree square.
DOI: 10.5061/dryad.4c3g9/1
title: COI Folmer region

description: Reference OTU sequence alignments of the Folmer COI barcoding region for 15 relevant freshwater taxa (Downloaded with PrimerMiner April 2015)
DOI: 10.5061/dryad.4c3g9/2
title: COI Primer bind

description: Reference OTU sequence alignments of the HCO / LCO Folmer primer binding regions barcoding region for 15 relevant freshwater taxa (Downloaded with PrimerMiner February 2015, 26 bp trimming applied to sequences before clustering)
DOI: 10.5061/dryad.4k0q0/1
title: DietModelPlot

description: R code for statistical analyses and production of figures
DOI: 10.5061/dryad.53c84/2
title: fieldstudy_dataset
DOI: 10.5061/dryad.53c84/3
title: reflectance _dataset
DOI: 10.5061/dryad.578j2/10
title: flntgz63: See Explanation of Files for CFD analysis
DOI: 10.5061/dryad.578j2/11
title: flntgz82: See Explanation of Files for CFD analysis
DOI: 10.5061/dryad.578j2/12
title: flntgz83: See Explanation of Files for CFD analysis
DOI: 10.5061/dryad.578j2/2
title: PGLS analyses

description: Phylogenetic comparative analysis and dataset of kinematics and size across mantis shrimp.