cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15152/geo.14
title: Whole-rock carbon isotope data from the Pavilosta (Kurzeme, Latvia) drill core. Supplementary data table 1

description: Isotopic composition of bulk carbonate was measured using Thermo Scientific Delta V mass-spectrometer at the Institute of Geology at Tallinn University of Technology. Reproducability better than 0.1 permil.
DOI: 10.5281/zenodo.32989
title: Supporting Data: Structure-Based Markov Random Field Model For Representing Evolutionary Constraints On Functional Sites

description: Supporting data for the paper:

Chan-Seok Jeong, Dongsup Kim. Structure-based Markov random field model for representing evolutionary constraints on functional sites. Submitted. (2015)

See 'README' for a description of the contents.
DOI: 10.15128/3f462541v
title: Observation of interference effects via four photon excitation of highly excited Rydberg states in thermal cesium vapor (Data files)

description: We report on the observation of Electromagnetically Induced Transparency (EIT) and Absorption (EIA) of highly-excited Rydberg states in thermal Cs vapor using a 4-step excitation scheme. The advantage of this 4-step scheme is that the final transition to the Rydberg state has a large dipole moment and one can achieve similar Rabi frequencies to 2 or 3 step excitation schemes using two orders of magnitude less laser power. Consequently each step is driven by a relatively low power infra-red diode laser opening up the prospect for new applications. The observed lineshapes are in good agreement with simulations based on multilevel optical Bloch equations.
DOI: 10.4119/unibi/2694807
title: Supplementary Material for "Sonification of the Human EEG"

description: This chapter summarizes the ideas, techniques, and potential application domains of the sonification of the human electroencephalogram (EEG). We start by explaining why sonification is a particularly promising tool to understand EEG data; then we review early uses of sound for the investigation of the electric brain activity, followed by a design-oriented explanation of different techniques for sonifying EEG data, many of which have been introduced by the authors. We supply sonification examples on an accompanying Web site so that the information content and aesthetics of the sonifications can be directly perceived.1 Finally, we give an outlook on how EEG sonification can change clinical procedures in the near future, focusing particularly on the potential of interactive sonification.
DOI: 10.15468/dl.qebntn
title: GBIF Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query: HasCoordinate: true 
HasGeospatialIssue: false 
Year: &gt;= 2015 
Month: &gt;= January 
Country: India 
TaxonKey: 793. The dataset includes 0 records from 0 constituent datasets:
DOI: 10.5281/zenodo.33054
title: Arterial Hemodynamics: A Database Of Virtual Subjects

description: We present a novel methodology to assess theoretically physiological computed indices and algorithms based on pulse wave analysis in the large arteries of the cardiovascular system. 

We have created a database of virtual healthy adult subjects using a validated one-dimensional numerical model of the arterial hemodynamics, which cardiac and arterial parameters are varied within physiological healthy ranges. The generated set of simulations encloses more than 3300 cases which could be encountered in a clinical study. For each simulation, hemodynamic signals (e.g. pressure, flow and distension waveforms) are available at all arterial locations, and allow the computation of indices of interest.

The database has been efficiently used to assess the accuracy of the foot-to-foot pulse wave velocities for estimation of aortic stiffness [1] and other physiological indices. It is an efficient way to validate an algorithm based on pressure and flow signals without suffering from experimental error. Finally, the database can be used to understand the theoretical mechanisms of wave propagation: since all arterial parameters are known, one can easily post-process the pressure and flow waveforms.  

[1] M. Willemet, P. Chowienczyk and J. Alastruey.<strong> </strong>A database of virtual healthy subjects to assess the accuracy of foot-to-foot pulse wave velocities for estimation of aortic stiffness. <em>American Journal of Physiology - Heart and Circulatory Physiology, </em>309(4):H663-H675, 2015

 

Data is saved in Matlab formatted files, with results sorted by arterial location, and physiology of the results (each file is about 300 MB). In addition, the Fictive_database.mat file stores a description of the arterial network geometry, and values of computed physiological indices (e.g. Cardiac Output, PWV, Pulse Pressure). The structure of the database is explained in details in the manual document.
description: {"references": ["M. Willemet, P. Chowienczyk and J. Alastruey. A database of virtual healthy subjects to assess the accuracy of foot-to-foot pulse wave velocities for estimation of aortic stiffness. American Journal of Physiology - Heart and Circulatory Physiology, 309(4):H663-H675, 2015"]}
DOI: 10.5284/1035165
title: Brixworth Church Survey: data digitisation and analysis

description: The Brixworth Archaeological Research Committee was founded in 1972 and wound up in 2015. From 1976 a fieldwork project had as its aim the stone-by-stone recording of all the exposed fabric of All Saints' Church, which continued sporadically into the early 1990s, as opportunities for surveying arose. Excavations took place in 1971, 1972 and 1981-82, and a Ground Penetrating Radar survey was carried out in 2008. The ultimate aim of the research was to place the Anglo-Saxon church of All Saints, Brixworth, in its archaeological, historical and topographical context.
DOI: 10.5281/zenodo.33126
title: Spatiotemporal-Evolution-Of-Ebola: First Release

description: Data and code for "Spatiotemporal evolution of Ebola virus disease at sub-national level during the 2014 West Africa epidemic: model scrutiny and data meagreness"
DOI: 10.15128/tt44pn26z
title: Data from "Spectroscopic detection of atom-surface interactions in an atomic-vapor layer with nanoscale thickness"

description: Abstract from paper: 
We measure the resonance line shape of atomic-vapor layers with nanoscale thickness confined between two sapphire windows. The measurement is performed by scanning a probe laser through resonance and collecting the scattered light. The line shape is dominated by the effects of Dicke narrowing, self-broadening, and atom-surface interactions. By fitting the measured line shape to a simple model we discuss the possibility to extract information about the atom-surface interaction.
DOI: 10.5281/zenodo.33073
title: Supporting Materials For Manuscript Entitled 'Ultrasonic Isolation Of Buried Pipes'

description: This set contains data in support of some of the figures appearing in an open access manuscript entitled 'Ultrasonic Isolation of Buried Pipes' that is published at the Journal of Sound of Vibration (DOI:10.1016/j.jsv.2015.10.018).

The data set contains ultrasonic guided wave attenuation measurements performed on a full-scale experimental rig, and model simulations output obtained using the software Disperse. The data set contains three files. Details on the specific data is provided within an extra file ('readme' file).
DOI: 10.5281/zenodo.33035
title: Data Of Effect Of Different Iterative Reconstruction Algorithms On Ultra-Low Dose Ct Of Inflammatory Bowel Disease In A Rabbit Model

description: This file contains the experimental data of the scientific paper titled: " <strong>Effect of different iterative reconstruction algorithms on ultra-low dose CT of inflammatory bowel disease in a rabbit model"</strong>
DOI: 10.7267/n9w66hpq
title: Data from: Water, water everywhere: Defining and assessing data sharing in academia

description: This dataset supports a research project and paper where we define criteria for assessing the effectiveness of data sharing, under the assumption that the goal of data sharing is to make the data usable, with minimal effort, to the new user. We take the position that the bar should be set relatively low for the usability of data in order to facilitate the downstream goals of sharing such as validation of results, reproducibility of research, and use of data for novel science. The dataset is composed of a set of comma-delimited (csv) files and a text README file. Information about the dataset, include a file list, variables, headers, etc. can all be found in the README file.
DOI: 10.17632/cn57y5vsbm.2
title: Pieniądz elektroniczny a działalność banku centralnego

description: Niniejsze arkusze zawierają dane z pracy magisterskiej pt. "Pieniądz elektroniczny a działalność banku centralnego" autorstwa Radosława Kotkowskiego.
DOI: 10.5281/zenodo.33166
title: Ismrmrd Raw Data V1.3

description: Data for the ISMRMRD Raw File format paper.
DOI: 10.5061/dryad.s5812/1
title: Hog movement - raw data

description: Hog movement data - individual trajectories of the GPS-tracked hogs
DOI: 10.5061/dryad.s5812/2
title: SSF-memory code

description: R code to run the Step Selection Function memory based
DOI: 10.5281/zenodo.33314
title: Diffraction Images Of Crystals Of The Calx-Beta Domain Of Integrin Beta4 (Pdb Code 3Fq4)

description: Diffraction images of native crystals of the Calx-β domain<br>
of the human integrin β4 subunit. Images correspond to the dataset used to solve and refine the pdb entry 3FQ4 (http://www.rcsb.org/pdb/explore/explore.do?structureId=3FQ4).

Data was collected using a rotating anode generator (MicrostarH, Bruker AXS) and a mar345dtb image plate detector (marXperts GmbH). The dataset consists of 360 images (1 degree oscillation per image). Data extend to 1.48 Å resolution.
description: {"references": ["Alonso-Garc\u00eda N, Ingl\u00e9s-Prieto A, Sonnenberg A, de Pereda JM (2009) \"Structure of the Calx-\u03b2 domain of the integrin \u03b24: insights into function and cation-independent stability.\" Acta Cryst D., 65: 858-871."]}
DOI: 10.5284/1035166
title: The animal origin of thirteenth-century uterine vellum revealed using noninvasive peptide fingerprinting

description: null
DOI: 10.15468/dl.nejuj4
title: GBIF Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query: HasCoordinate: true 
HasGeospatialIssue: false 
Year: &gt;= 2000 
Month: &gt;= January 
Country: Mexico 
TaxonKey: 143117128. The dataset includes 0 records from 0 constituent datasets:
DOI: 10.5281/zenodo.33432
title: The Effects Of Dexamphetamine On The Resting State Electroencephalogram And Functional Connectivity

description: This upload comprises supplementary material and data for the paper "The effects of dexamphetamine on the resting state electroencephalogram and functional connectivity" Albrecht et al. (2015), Human Brain Mapping DOI: 10.1002/hbm.23052

1) The cleaned and group ICA resting state data in EEGLAB format.

2) Basic demographics for the participants. Drug order 1 = placebo first, then dexamphetamine second. Drug order 2 = dexamphetamine first, then placebo second. Gender 1 = Female, Gender 2 = Male.

3) Bayesian hierarchical modelling functions for R and Stan (through rstan). See paper for more details.
DOI: 10.15468/3deml2
title: Estonian University of Life Sciences

description: Natural History Collections in Estonian University of Life Sciences.
DOI: 10.17893/se7t5w
title: Herbario Universidad de Antioquia (HUA)

description: El conjunto de datos cuenta con 80000 registros tomados de información procedente de colecciones botánicas depositadas en el herbario de la Universidad de Antioquia (HUA), la información contiene el nombre científico de la especie, nombre común cuando se conoce, datos relacionados con la localidad, coordenadas geográficas cuando se cuenta con la información, altura, colector, número de colección y fecha de colección.

Este conjunto comprende 184 familias,  2068 géneros y 9882 especies diferentes. Con una distribución geográfica que comprende 37 países, en su mayoría correspondientes a América.
DOI: 10.17031/x2fu6n
title: Discovery data FI

description: The results of surveys conducted to determine the marine biodiversity of the waters surrounding the Falkland Islands and beyond, conducted by Discovery Investigations between the 1920s and 1940s
DOI: 10.15128/j3860693n
title: Metadata for 'Long lifetime hole traps at grain boundaries in CdTe thin-film photovoltaics'

description: A novel time-resolved cathodoluminescence method, where a pulsed electron beam is generated via the photoelectric effect, is used to probe individual CdTe grain boundaries. Excitons have a short lifetime (100 ps) within the grains and are rapidly quenched at the grain boundary. However, a ~47 meV shallow acceptor, believed to be due to oxygen, can act as a long lifetime hole trap, even at the grain boundaries where their concentration is higher. This provides direct evidence supporting recent observations of hopping conduction across grain boundaries in highly doped CdTe at low temperature.
description: Time resolved cathodoluminescence
DOI: 10.5281/zenodo.33599
title: Primate Daily Energy Use

description: Daily energy requirements of primates collated from the literature, with sample size, body weight, mean species brain weight (from Stephan 1981), basal metabolic rate, source, and measurement method.
DOI: 10.5281/zenodo.33470
title: WiggleZ Dark Energy Survey Baryon Acoustic Oscillation Random Catalogues

description: Data products associated with the WiggleZ Dark Energy survey measurement of the Baryon Acoustic Oscillations (BAO), as described in Blake et al. arXiv:1108.2635 (2011, MNRAS, 418, 1707) Data is given for 6 WiggleZ regions (01, 03, 09, 11, 15, 22 hrs) in 3 different overlapping redshift slices (z=0.2-0.6, 0.4-0.8, 0.6-1.0), matching the datasets analyzed in the final WiggleZ baryon acoustic peak paper Blake et al. (2011, MNRAS, 418, 1707). For each sub-region the following files are given: <strong>Correlation function:</strong> xi_**hr*.dat - correlation function measurement and covariance matrix for each sub-region. Format of the file: 1st line: nbin, ngalaxy nbin lines: mean separation [Mpc/h], xi(s), sqrt[Cov(i,i)] nbin x nbin lines: i, j, Cov(i,j) The covariance matrix is from lognormal realizations, not jack-knife regions. <strong>Combined correlation function:</strong> xi_combined*.dat - correlation function measurement for each redshift range combining the measurements in each sub-region, in the same format as above. <strong>Integral constant:</strong> wigglez_ic.dat - integral constraint correction which should be added to the measured correlation function, format of the file is: Region [hr], zmin, zmax, integral constraint delta-xi We are considering adding another 90 random catalogues in the near future. For now the random catalogues used in the previous analysis are available below.
DOI: 10.5281/zenodo.33546
title: Pisa 2012: How Do Results For The Paper And Computer Tests Compare (Do-Files)

description: These do-files run the analysis on the PISA 2012 dataset.
DOI: 10.5281/zenodo.33555
title: Example Cytidine Data Set From I19-1 At Diamond Light Source

description: Data set recorded in 6 scans, three omega and three phi, on the updated Diamond Light Source beamline I19-1, as part of routine commissioning. These data have been processed several times with different packages and are being made available to the community as an example set to allow other data processing software authors to verify the content of the data and headers.
DOI: 10.5525/gla.researchdata.231
title: Postsynthetic Bromination of UiO66 Analogues Altering Linker Flexibility and Mechanical Compliance

description: The data comprise experimental synthesis and characterisation of two porous materials, and their subsequent transformation by addition of bromine. The data also include the effect this modification of the material has on the mechanical properties, specifically the elastic modulus.
DOI: 10.5281/zenodo.33608
title: Dna Data Visualizations Generated With Ddv Software

description: A ZIP file containing the DNA Data Visualization interfaces generated with DDV software.  These interfaces are available live at: at: http://www.photomedia.ca/DDV/dnadata/ 

The corresponding source code for this project is at: https://github.com/photomedia/DDV
DOI: 10.1594/wdcc/cosmo-clm_siberia
title: Regional climate model hindcasts for Siberia over the last decades based on the COSMO-CLM model driven by NCEP1 and ERA-40, run by Helmholtz-Zentrum Geesthacht

description: Project: Climate Model Simulations at Helmholtz-Zentrum Geesthacht - Centre for Materials and Coastal Research - The hindcast simulations were conducted as contribution to the Helmholtz Climate Initiative REKLIM (Regional Climte Change), a joint research project of the Helmholtz Association of German research centres (HGF). http://www.reklim.de/ Summary: These are two atmospheric hourly hindcasts for Siberia using COSMO-CLM (CCLM) version 4.8_clm_11 with spectral nudging. The hindcast CCLM_sib_NCEP1 covers a period from 1948-2010 and has been performed using NCEP-R1 Reanalysis as global atmospheric forcing for the initialization and regional boundaries. The hindcast CCLM_sib_ERA40 was driven by ERA-40 from 1959-2001. CCLM uses a rotated grid with 76 x 76 grid points (without the sponge zone) and a grid point distance of 0.44 degrees, the rotated North pole is located at 75 W, 35 N. In rotated coordinates the model area extends from 14.72 W to 18.28 E, 9.72 S to 27.68 N, in geographical coordinates this corresponds to about 41.2 W to 174.9 E, 42 N to 82.7 N. For all variables lon, lat and the value of the 18:00 time record for the last day is added. The output from the model run: Blizzard
DOI: 10.14469/hpc/156
title: chemdraw test

description: my first chemdraw submission
DOI: 10.14469/hpc/157
title: chemdraw test

description: my first chemdraw submission
DOI: 10.14469/hpc/158
title: chemdraw test

description: my first chemdraw submission
DOI: 10.14469/hpc/159
title: chemdraw test

description: my first chemdraw submission
DOI: 10.14469/hpc/160
title: chemdraw test

description: my first chemdraw submission
DOI: 10.14469/hpc/161
title: chemdraw test

description: my first chemdraw submission
DOI: 10.14469/hpc/162
title: chemdraw test

description: my first chemdraw submission
DOI: 10.14469/hpc/163
title: chemdraw test

description: my first chemdraw submission
DOI: 10.14469/hpc/164
title: chemdraw test

description: my first chemdraw submission
DOI: 10.14469/hpc/165
title: chemdraw test

description: my first chemdraw submission
DOI: 10.14469/hpc/166
title: chemdraw test 2

description: chemdraw test 2 desc
DOI: 10.14469/hpc/167
title: chemdraw

description: chemdraw
DOI: 10.14469/hpc/168
title: chemdraw

description: chemdraw 2
DOI: 10.14469/hpc/169
title: chemdraw

description: chemdraw 2
DOI: 10.14469/hpc/172
title: Streoprubin

description: Synthesis
DOI: 10.15468/qodsto
title: A common plants survey of vascular plants in South Northumberland and Durham, United Kingdom

description: A vascular plant survey of the vice counties of South Northumberland and Durham, United Kingdom.
DOI: 10.17034/382f52a2-cb29-4435-b8fd-88667b1d0613
title: Results Data Set for Prediction of Transonic Limit-Cycle Oscillations Using an Aeroelastic Harmonic Balance Method

description: Tecplot data files corresponding to the results presented in the AIAA J. paper: Prediction of Transonic Limit-Cycle Oscillations Using an Aeroelastic Harmonic Balance Method
DOI: 10.17632/537hdf9zwz.1
title: BindDB: Bivalent genes Case Study

description: Validate and Expand Established Epigenetic Profiles In order to validate the ability of BindDB to detect an already well-established epigenetic profile, we began with the large group of 'bivalent' genes coined on the premise of the epigenetic characteristics of their promoters. These 3913 genes in human and 2984 genes in mouse(Azuara et al., 2006; Bernstein et al., 2006; Li et al., 2013) have the H3K4me3 active promoter hallmark as well as the H3K27me3 repressive histone modification in close proximity to their transcriptional start sites and are lowly expressed in ESCs(Bernstein et al., 2006). The repressed nature of the bivalent promoters in ESCs is conferred by the Polycomb repressive complexes (PRC), which interact with the H3K27me3 mark. We uploaded the list of bivalent genes by gene name to BindDB, selected the 'proximal promoter (-1000, +1000) as the gene portion to query and within less than 5 minutes, could confirm all of the above. Enrichment score analysis (the ratio of factor binding to the queried gene promoters divided by the ratio of factor binding to all gene promoters) clearly indicates an enrichment in the characteristic "K4-K27" (Figure S1A, blue arrows) histone marking at bivalent gene promoters. In addition, the depletion of H3K36me3 indicates that these genes, although exhibiting an active chromatin mark, are not expressed at high levels. H3K36me3 is also depleted across the bivalent gene bodies when compared to all gene bodies (data not shown).This finding complies with the hypothesis that PHF19, a component of the Polycomb complex, recruits histone-lysine demethylase NO66 in order to reduce levels of H3K36me3 at bivalent genes(Brien et al., 2012) and is strengthened by the enrichment of H3K36me2 instead, and PHF19 itself at these promoters. In addition to PHF19, many other components of the Polycomb complexes can be found as well, including EZH1 and EZH2, SUZ12, JARID2, and RING1 proteins. The presence of KDM2A and KDM2B may imply that these proteins are involved in the demethylation of either lysine 4 or lysine 27 during cell fate determination. Alternatively, KDM2B (FBXL10) along with CBX7, which also shows enrichment in the BindDB analysis (Figure S1A, left), have been shown to be involved in the recruitment of the PRC1 complex to the H3K27me3 histone mark (He et al., 2013; Morey et al., 2012). Strikingly, hardly any significant enrichment of transcription factors could be detected at bivalent genes in ESCs (Figure S1B, filtered heatmap), except for OCT4 and SOX2, in line with previous findings that these key ESC transcription factors bind approximately one third of PRC2-occupied genes that also encode developmental transcription factors (Boyer et al., 2006; Lee et al., 2006). This phenomenon is unique to this group of genes (see subsequent examples) and signifies the important role of epigenetic regulation on these 'poised', yet inactive genes in ESCs.