cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.24416/uu01-lb70qm
title: Data package from article Non-Topological Edge-Localized Yu-Shiba-Rusinov States in CrBr3/NbSe2 Heterostructures

description: This package contains raw data used to create the figures in the article Non-Topological Edge-Localized Yu-Shiba-Rusinov States in CrBr3/NbSe2 Heterostructures
DOI: 10.24416/uu01-ie3msv
title: Experimental Evidence for reaction-induced weakening of (Carbonated) Serpentinite Fault Gouges

description: We analysed the frictional behaviour of antigorite and carbonated antigorite fault gouges in rotary-shear experiments at Utrecht University. Experiments were conducted at temperatures ranging from 400 - 630 °C, effective normal stresses of 100 - 150 MPa under fluid saturated conditions. This data package includes frictional data from rotary-shear experiments and back-scattered electron (BSE) images of run products. Three samples were analysed by means of micro-computer tomography (µCT). Sliced scans can also be found in this data package.

The data is provided in 3 subfolders. Detailed information about the files in these subfolders as well as information on how the data is processed is given in the explanatory file (readME.txt) Contact person is Lisa Eberhard - l.eberhard@uu.nl
DOI: 10.24416/uu01-pf05v3
title: Experimental Evidence for reaction-induced weakening of (Carbonated) Serpentinite Fault Gouges

description: We analysed the frictional behaviour of antigorite and carbonated antigorite fault gouges in rotary-shear experiments at Utrecht University. Experiments were conducted at temperatures ranging from 400 - 630 °C, effective normal stresses of 100 - 150 MPa under fluid saturated conditions. This data package includes frictional data from rotary-shear experiments and back-scattered electron (BSE) images of run products. Three samples were analysed by means of micro-computer tomography (µCT). Sliced scans can also be found in this data package.

The data is provided in 3 subfolders. Detailed information about the files in these subfolders as well as information on how the data is processed is given in the explanatory file (readME.txt) Contact person is Lisa Eberhard - l.eberhard@uu.nl
DOI: 10.24416/uu01-101811
title: Data package from article One Dimensional Edge Localized YSR States in CrCl3 on NbSe2

description: This folder contains the experimental data used to create the figures shown in our manuscript on CrCl3/NbSe2 heterostructures.
DOI: 10.24416/uu01-zgeyqy
title: Multi-scale electron microscopy data package of nanoporosity in serpentinite

description: To determine the nature of serpentinite nanoporosity, we employed multidimensional electron microscopy in conjunction with granular simulations. We investigated samples from the Mid-Atlantic Ridge and the Røragen ultramafic complex (Norway) using scanning and transmission electron microscopy, as well as the electron backscatter diffraction technique (EBSD). Additionally, to obtain 3-D data, we performed nanotomography using focused-ion beam scanning electron microscopy (FIB-SEM). Our findings reveal that serpentinites act as nanoporous media, with pore sizes predominantly less than 100 nm. The data is organized into 10 folders referred to as Figure X, where X corresponds to the figure number in the primary publication. Detailed information about the files and methods employed can be found in the accompanying readme file.
DOI: 10.24416/uu01-z9xkdo
title: Hydrodynamic stability criterion for colloidal gelation under gravity

description: Data package accompanying the publication with the above title [Phys. Rev. E 107, 034608 (2023)]. This package provides all the relevant information, scripts, and source codes for numerically studying colloidal gel formation with a buoyant force using a lattice-Boltzmann algorithm. The advantage is a GPU-compatible simulation, which is efficient in computing the long-range many-body hydrodynamic interactions and porous medium flows disrupting the nascent gel network. The downside of the approach is a limited quality of the near-field hydrodynamic description. Within this approximation, a dynamic stability criterion can be established for the transient regime of network formation. The accompanying publication provides the full details.

In brief, this package contains the data required to reproduce the graphs for the simulations, as well as the simulation source code and analysis scripts required to process the raw simulation output. In each directory there are readme.txt files that describe the content and use of the elements contained therein, e.g., how to run various script to obtain the raw simulation data. This is a mix of C++ codes, Python analysis routines, GNUPlot scripts, Mathematica notebooks, and text files containing data in a column-wise (ASCII) format.
DOI: 10.24416/uu01-q36jba
title: Polarization-Sensitive Imaging in Magnetic Environments

description: Data and code for the figures in the article "Polarization-Sensitive Imaging in Magnetic Environments"
DOI: 10.24416/uu01-0xsgwo
title: In-situ and optical profilometry data for single-shot ablation experiment on crystalline silicon

description: This folder contains in-situ camera images (acquired on 20210729) taken during an experiment on single-shot laser ablation on crystalline silicon and corresponding optical profilometry data (acquired on 20210730).

The raw data are stored in the folder Data/RawData/, in subfolders called run_007 ... run_070.
The folder PreProcessing/ contains scripts used to pre-process the data. The results of this preprocessing are stored in Data/
The folder OverviewFigures/ contains figures that illustrate the steps in the preprocessing. These figures are generated using the similarly named scripts PreProcessing/create_overview_...
DOI: 10.24416/uu01-f2uo5h
title: Modelled outputs for "A data derived workflow for reservoir operations (in global hydrologic models)"  (Steyaert et al., 2025)

description: Contains storage fraction and discharge for all four of the simulations in the analysis of 'A data derived workflow for reservoir operations (in global hydrologic models)' (Steyaert et al., 2025). Each model scenario has its own folder that can be referenced based on Table 2 in the Steyaert et al., 2025. Model outputs are then divided into two folders: discharge and storage, which contain the necessary PCR-GLOBWB 2 variables used for this analysis. The maskGlobal.nc contains a netcdf that references the basin number ( denoted as 01 - 53) in the individual variable folders to the spatial region that it encompasses.

The data is provided in 5 subfolders. Detailed information about the files in these subfolders as well as information on how the data is processed is given in the explanatory file Readme_ReservoirData.rtf. For more information, please contact Jennie C. Steyaert (j.c.steyaert@uu.nl) or Niko Wanders (n.wanders@uu.nl).
DOI: 10.24416/uu01-x3hyk2
title: Measurements to calibrate pulse energy for main ablation experiment

description: This folder contains the data used to calibrate the pulse energy (as measured using the auxiliary camera in the setup) with respect to a TD10XP thermopile sensor mounted in the sample plane under the ablation objective. These were taken to calibrate measurements done on 20210729.
DOI: 10.15468/dl.trg9gt
title: Occurrence Download

description: A dataset containing 42770 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Belgium, United States of America, Germany, United Kingdom of Great Britain and Northern Ireland)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pholcus phalangioides"
 ]
}

 The dataset includes 42770 records from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005443-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.24416/uu01-lgp81p
title: Modelled outputs for " Data derived reservoir operations simulated in a global hydrologic model"  (Steyaert et al., 2025)

description: Contains storage fraction and discharge for all five of the simulations in the analysis of ' Data derived reservoir operations simulated in a global hydrologic model' (Steyaert et al., 2025). Each of the five model scenarios has its own folder. The five main models in our analysis can be referenced based on Table 2 in Steyaert et al., 2025. The noCA model was an addition after revisions and therefore contains model runs using the Turner operational scheme and no downstream command area. Model outputs are then divided into two folders: discharge and storage, which contain the necessary PCR-GLOBWB 2 variables used for this analysis. The maskGlobal.nc contains a netcdf that references the basin number ( denoted as 01 - 53) in the individual variable folders to the spatial region that it encompasses.

The data is provided in 6 subfolders. Detailed information about the files in these subfolders as well as information on how the data is processed is given in the explanatory file Readme_ReservoirData.rtf. For more information, please contact Jennie C. Steyaert (j.c.steyaert@uu.nl) or Niko Wanders (n.wanders@uu.nl).
DOI: 10.24416/uu01-xic8pb
title: Modelled outputs for " Data derived reservoir operations simulated in a global hydrologic model"  (Steyaert et al., 2025)

description: Contains storage fraction and discharge for all five of the simulations in the analysis of ' Data derived reservoir operations simulated in a global hydrologic model' (Steyaert et al., 2025). Each of the five model scenarios has its own folder. The five main models in our analysis can be referenced based on Table 2 in Steyaert et al., 2025. The noCA model was an addition after revisions and therefore contains model runs using the Turner operational scheme and no downstream command area. Model outputs are then divided into two folders: discharge and storage, which contain the necessary PCR-GLOBWB 2 variables used for this analysis. The maskGlobal.nc contains a netcdf that references the basin number ( denoted as 01 - 53) in the individual variable folders to the spatial region that it encompasses.

The data is provided in 6 subfolders. Detailed information about the files in these subfolders as well as information on how the data is processed is given in the explanatory file Readme_ReservoirData.rtf. For more information, please contact Jennie C. Steyaert (j.c.steyaert@uu.nl) or Niko Wanders (n.wanders@uu.nl).
DOI: 10.24416/uu01-dwn2ht
title: Analysis of measurements to calibrate pulse energy for main ablation experiment

description: This folder contains the analysis used to calibrate the pulse energy (as measured using the auxiliary camera in the setup) with respect to a TD10XP thermopile sensor mounted in the sample plane under the ablation objective. The relevant data were taken on 20210916. These were taken to calibrate measurements done on 20210729.
DOI: 10.24416/uu01-n7tdvh
title: Top-view and cross-section photographs from analogue experiments of strain partitioning during coeval indentation and back-arc extension performed in the Tectonic modelling laboratory (TecLab) at Utrecht University

description: This dataset contains original unaltered top-view and cross-section photographs of 4 crustal-scale analogue models. Top-view photographs were taken at a regular time interval from the beginning until the end of each experiment (for details see below). Cross-section photographs were taken at the end of each experiment. Top-view photographs were used to analyse surface deformation through time and space, while in cross-sections vertical deformation was studied. The dataset is arranged in 4 folders, each containing the data for the individual models (model1 to model4). The folder numbering corresponds to the model numbers as described in Krstekanić et al. (in prep.). Each folder contains two sub-folders named m#-cross-sections and m#-top-views where m stands for the model and # for the number of the model (i.e., the same number as the parent folder). The m#-cross-sections sub-folder contains one top-view photograph showing the locations of the cross-sections as well as the corresponding cross-section photographs. A number in each cross-section photograph is the same as the number next to the cross-section location in the top-view. The m#-top-views sub-folder contains all top-view photographs of that particular model, from its initial, undeformed state to the end of the experiment, showing the surface of the model at the moment of the photo acquisition. All photographs in this dataset are in .jpg format and their names are original generic names created by the camera software at the moment of acquisition. Detailed information about the files as well as information on how the data is processed is given in the explanatory file krstekanic-et-al-2021-data-documentation.docx. Contact person is Nemanja Krstekanić - PhD Candidate - n.krstekanic@uu.nl - https://www.uu.nl/staff/nkrstekanic
DOI: 10.24416/uu01-mz5onp
title: Density Distribution of a Bose-Einstein Condensate of Photons in a Dye-Filled Microcavity: Code and Data

description: In this work, we present the data and an implementation of the theoretical model that were used to prepare the manuscript with the title "Density Distribution of a Bose-Einstein Condensate of Photons in a Dye-Filled Microcavity" by S. Greveling, K. L. Perrier, and D. van Oosten. 

The folder ManuscriptFigures contains the figures in the manuscript as well as the Python scripts used to generate them. The (relative) paths used in these scripts can be used as a guide through the analysis and the dataset.
DOI: 10.24416/uu01-v5jpth
title: Data accompanying "Development of an efficient model to calculate subsidence above the Groningen gas field"

description: This data package accompanies: Wouters, M.C., Govers, R. & Hanssen, R.F., "Development of an efficient model to calculate subsidence above the
Groningen gas field", submitted to Netherlands Journal of Geosciences.

The data package consist of the workflow described in the accompanying manuscript, and includes the in- and output files of the reported results. An overview of the workflow, and a description of the files contained in the package is provided in README.txt. Instructions for the software installation, including all programs and packages that are required to run the workflow can be found in README_installation.txt. README_figures.txt summarises where to find the plotted data, plotting scripts, and resulting figure files associated with the figures of the manuscript.
DOI: 10.24416/uu01-up97ec
title: Polarization of a Bose-Einstein Condensate of Photons in a Dye-Filled Microcavity: Code and Data

description: In this work, we present the data and analysis that were used to prepare the manuscript with the title "Polarization of a Bose-Einstein Condensate of Photons in a Dye-Filled Microcavity" by S. Greveling, F. van der Laan, H. C. Jagers, and D. van Oosten. The folder 'Analysis' contain all the Python scripts used to determine the polarization of our photon gas for each corresponding dataset. The (relative) paths used in these scripts can be used as a guide through the analysis and the dataset.
DOI: 10.24416/uu01-dbwhhv
title: Data accompanying "Development of an efficient model to calculate subsidence above the Groningen gas field"

description: This data package accompanies: Wouters, M.C., Govers, R. & Hanssen, R.F., "Development of an efficient model to calculate subsidence above the
Groningen gas field", submitted to Netherlands Journal of Geosciences.

The data package consist of the workflow described in the accompanying manuscript, and includes the in- and output files of the reported results. An overview of the workflow, and a description of the files contained in the package is provided in README.txt. Instructions for the software installation, including all programs and packages that are required to run the workflow can be found in README_installation.txt. README_figures.txt summarises where to find the plotted data, plotting scripts, and resulting figure files associated with the figures of the manuscript.
DOI: 10.24416/uu01-w3pcry
title: Data accompanying "Development of an efficient model to calculate subsidence above the Groningen gas field"

description: This data package accompanies: Wouters, M.C., Govers, R. & Hanssen, R.F., "Development of an efficient model to calculate subsidence above the
Groningen gas field", submitted to Netherlands Journal of Geosciences.

The data package consist of the workflow described in the accompanying manuscript, and includes the in- and output files of the reported results. An overview of the workflow, and a description of the files contained in the package is provided in README.txt. Instructions for the software installation, including all programs and packages that are required to run the workflow can be found in README_installation.txt. README_figures.txt summarises where to find the plotted data, plotting scripts, and resulting figure files associated with the figures of the manuscript.
DOI: 10.24416/uu01-9g2yzb
title: De Wit 2026 Groundwater and sea-level rise spatiotemporal interpolation input and output

description: This Geological Input data package belongs to chapters and articles
from PhD thesis work by Kim de Wit, within the NWA-LOSS project.

The geological input is used in 3D interpolation covering the Holocene coastal plain of the Netherlands.
The 3D interpolation code is stored separately, on GitHub.com.
The repository for recreating the 3D interpolation can be found at https://doi.org/10.5281/zenodo.18175831
The repository for filtering the output data and isolating a GIA subsidence signal can be found at https://doi.org/10.5281/zenodo.18176674

The geological input read by the interpolation code is partly in grid format, partly in point format.
The gridded data files, generated in GIS by Kim de Wit and most extensively documented in Chapter 3 of the thesis, are shared here.  The point data (SLIPs, ULDs, ...) are contained in a separate database, in HOLSEA international standard format, published in January 2026 on Zenodo.org. The geological input repository here, for referral contains a placeholder folder with a readme.txt.

Contact person: Kim de Wit (k.dewit@uu.nl; kim.d.w@live.nl), data curation: Kim Cohen (k.m.cohen@uu.nl)
DOI: 10.82209/488f-fs54
title: The legacy effect of Cover Crops on soil structure amelioration: Cover crops (CCs) increase the mean weight diameter (MWD) from 10% for oat and up to 19% for Mix12 compared to fallow.
DOI: 10.15468/dl.4xdhdz
title: Occurrence Download

description: A dataset containing 1422 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Helicteres angustifolia",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 1422 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005448-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.898xu6
title: Occurrence Download

description: A dataset containing 219 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithophyllum kotschyanum"
 ]
}

 The dataset includes 219 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005450-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.24416/uu01-lwnx9b
title: Data supplement to: Vegetation reconfigures barrier coasts and affects tidal basin infilling under sea level rise

description: Many tidal basins associated with barrier coasts worldwide infilled over the past millennia due to the combination of sediment supply, wave-tidal sediment transport, and eco-engineering effects of plants. However, the biogeomorphological interactions between saltmarsh and the morphodynamics of an entire coastal barrier system are poorly understood, especially under sea level rise. Here we study the evolution of a barrier coast for combinations of mud availability, presence of vegetation and sea level rise. We developed a novel biogeomorphological model of an idealized barrier coast enclosing a tidal basin with sandy-clayey sediments that was subjected to tides and waves for 100 years. The morphodynamic Delft3D model was coupled to a vegetation code which accounts for the dynamics of marsh-type vegetation. 
The model data includes input files and output as a timeseries of maps of the Delft3D model and of the vegetation model for 8 scenarios and 77 timesteps per scenario. Furthermore, detailed timeseries at predefined observation points and cross-sections are reported for 3649 timesteps over the same model duration.
Initially, vegetation contributed to reducing the tidal prism while sediment was imported. However, with SLR this trend was reversed and the tidal basins started to export sediment for vegetated runs after about 50-60 years while the unvegetated scenarios continued to infill in pace with the SLR. The sediment export was caused by cascading morphodynamic feedback effects triggered by vegetation which modified channel and shoal dynamics. Even under higher mud supply, the SLR resulted in vegetation collapse. The hypsometries, similar to natural systems, show that vegetated systems converge into an alternative equilibrium condition. We conclude that, although the short-term tendency of tidal basins to import sediment is increased by mud availability and vegetation, the long-term trapping capacity can be reduced by the cascading large-scale effects of vegetation on the morphodynamics of barrier coasts. Contact person: Maarten Kleinhans - m.g.kleinhans@uu.nl
DOI: 10.24416/uu01-qng5y4
title: A highly automated apparatus for ultra-fast laser ablation studies: figures and analysis code

description: This folder contains the analysis code to produce the figures that were used to prepare the manuscript with the title "A highly automated apparatus for ultra-fast laser ablation studies" by Marnix Vreugdenhil and Dries van Oosten.

The root folder contains the figures in the manuscript as well as the Python scripts used to generate them. The (relative) paths used in these scripts can be used as a guide through the analysis and the datasets.

To run the scripts, the data packages taken on 20210729, 20210915 and 20210916 are required. These are linked below as related data packages. As this folder contains only analysis results, the collection date below is chosen to reflect the collection dates of the related data packages.
DOI: 10.24416/uu01-l5ltra
title: Micro-computed tomography data of solute transport in a saturated and unsaturated sintered glass and Bentheimer sandstone sample

description: This dataset was used in the study of Van Offenwert et al. (2024). It contains time-resolved laboratory-based micro-CT images of saturated and unsaturated solute injection experiments in sintered glass and Bentheimer sandstone. Based on the grey values in the resolved pore space, pore-scale concentration fields can be quantified. The tracer injection experiments were imaged at 15 s per scan with a voxel size of 13.0 µm (‘Tracer injection experiments’). Each fast imaging experiment was preceded by a higher quality slower pre-scan to determine the static pore structure. All data were acquired with a gantry-based micro-CT system specially designed for in-situ imaging (UGCT). The aim was to analyze pore-scale solute concentration fields to investigate solute spreading and mixing during tracer injection experiments. Further details on the analyses of the micro-CT images can be found in Van Offenwert et al. (2024). The dataset can be used to investigate the influence of pore-scale heterogeneity and the volumetric pump velocity (the Péclet number) on transport processes.

The data is provided in 2 subfolders. Detailed information about the files in these subfolders as well as information on how the data is processed is given in the explanatory file ReadMe_Yoda_VanOffenwert.txt. Contact person is Stefanie van Offenwert - stefanie.vanoffenwert@ugent.be.