cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21227/r127-e376
title: "cncFinder: a graph attention network-based interpretable learning model to identify bifunctional long non-coding RNAs"

description: "The discovery of RNAs that possess both protein-coding and regulatory functions, known as bifunctional RNAs, has broadened our understanding of RNA biology. Long non-coding RNAs, which play crucial roles in gene regulation and cellular processes, represent an important subset of such molecules. Accurate and systematic identification of bifunctional long non-coding RNAs is essential for uncovering their roles in physiology and disease, and for advancing biomarker discovery and therapeutic development. In this study, we present cncFinder, a deep learning model based on graph attention networks designed to predict bifunctional long non-coding RNAs. The framework converts RNA sequences into k-mer graphs, encodes node features with Word2Vec, and applies graph attention mechanisms to capture higher-order sequence dependencies. On benchmark datasets, cncFinder achieved superior performance compared with existing approaches and demonstrated strong robustness across species, including mouse and fruit fly. Interpretability analysis indicated that the model recognized biologically relevant motifs, such as canonical start codons and Kozak-like elements. In a case study, cncFinder accurately detected a translation initiation motif in LINC00961, consistent with experimental validation. To promote broad accessibility, we developed a user-friendly web server (http:\/\/i-health.info\/cncFinder\/) that allows researchers to perform large-scale predictions. Overall, cncFinder improves predictive accuracy and interpretability, offering a reliable tool for systematic discovery of bifunctional long non-coding RNAs. It provides new perspectives for understanding the molecular mechanisms underlying RNA multifunctionality. The datasets and source code are freely available at https:\/\/github.com\/TangQiang0701\/cncFinder."
DOI: 10.15468/dl.y9ehru
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crataegus crus-galli",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002308-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqswr4
title: Occurrence Download

description: A dataset containing 35268 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gypsophila repens"
 ]
}

 The dataset includes 35268 records from 388 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002307-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bd8jtp
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crataegus crus-galli",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002309-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kn2ac7
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crataegus crus-galli",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 52 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002310-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9apyje
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cottus leiopomus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002311-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/htl-f04-mej
title: Chondrodite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9vr-zgr-dzh
title: Graphite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bvj-gg8-h8x
title: Graphite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hce-0qn-29g
title: Chondrodite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3ka-5s1-lbl
title: Chondrodite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w58-xbb-ptj
title: Graphite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jpx-vff-hlv
title: Chondrodite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6sh-f57-wej
title: Thaumasite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q72-6wb-jzd
title: Rock Crystal

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qpq-zfg-qxc
title: Rock Crystal

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mn2-kls-14m
title: Meliphanite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/h12-rwg-wlh
title: †Triplesia Hall, 1859

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t06-2ak-k5q
title: †Triplesia Hall, 1859

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/acp-2z8-nn3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/te4-eg3-ljv
title: †Illaenidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/e4x-g9c-z2c
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sgg-4cd-96g
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qfk-m55-1nv
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tce-nfg-wsb
title: Biotite schist

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qb6-2c3-g1n
title: Hollandite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7af-0eb-qsk
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ser-sfh-06v
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7sd-cgy-c2l
title: Demantoid

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zhf-2nc-2ma
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/447-he8-tek
title: Hisingerite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w2q-2f3-e3y
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8k8-qnl-hhc
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z7x-bwm-l5v
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/225-ghp-6qb
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7hj-yqt-a5s
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nve-18s-1yl
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7f4-pfp-e0h
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tfd-0lk-3aw
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8f5-whv-czt
title: Albarutheniaspis bessonovae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ph2-5wa-f8n
title: †Pilina Koken, 1925

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wfw-n0e-whw
title: Albarutheniaspis bessonovae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7vn-ays-zhk
title: Albarutheniaspis bessonovae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fy6-xsl-jc2
title: Albarutheniaspis bessonovae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ggx-qt0-zal
title: Albarutheniaspis bessonovae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.15468/dl.dvg4d5
title: Occurrence Download

description: A dataset containing 3897144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Algeria, Angola, Benin, Botswana, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Morocco, Mozambique, Namibia, Niger, Nigeria, Rwanda, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Zambia, Zimbabwe, Western Sahara, Réunion, Mayotte, Saint Helena, Ascension and Tristan da Cunha, British Indian Ocean Territory, French Southern Territories)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2020",
 "Year is less than or equal to 2020"
 ]
}

 The dataset includes 3897144 records from 371 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002278-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v6qbtp
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Rungwecebus kipunji (Ehardt, Butynski, Jones & Davenport, 2005)"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061737-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vjqpsf
title: Occurrence Download

description: A dataset containing 380169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Month is December",
 "Year 2017-2017"
 ]
}

 The dataset includes 380169 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218731-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ym2w5
title: Occurrence Download

description: A dataset containing 522 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Begonia sessilifolia Hook.fil."
 ]
}

 The dataset includes 522 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057262-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vqwinp
title: Occurrence Download

description: A dataset containing 964 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Sphaenorhynchus Tschudi, 1838",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 964 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020472-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qnmyoz
title: Occurrence Download

description: A dataset containing 8708911 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Literature Occurrence"
 ]
 },
 "Year is 2000",
 {
 "or" : [
 "TaxonKey is Mammalia",
 "TaxonKey is Aves",
 "TaxonKey is Reptilia",
 "TaxonKey is Amphibia"
 ]
 }
 ]
}

 The dataset includes 8708911 records from 467 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020475-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mmftgr
title: Occurrence Download

description: A dataset containing 163199 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Plant Specimen in Yunnan, China from Herbarium (PE),Institute of Botany, Chinese Academy of Sciences"
 ]
}

 The dataset includes 163199 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218749-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vh4aaf
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bergia aestivosa (Wight & Arn.) Steud."
 ]
}

 The dataset includes 56 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057298-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2fj23m
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dalbergia rhachiflexa J.Linares & M.Sousa"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152422-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ody4nu
title: Occurrence Download

description: A dataset containing 213 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Neyraudia reynaudiana (Kunth) Keng ex Hitchc.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 213 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007716-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4f9fcs
title: Occurrence Download

description: A dataset listing the 14716 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 {
 "or" : [
 "License is CC0 1.0",
 "License is CC-BY 4.0",
 "License is CC-BY-NC 4.0"
 ]
 },
 {
 "or" : [
 "MediaType is Audio",
 "MediaType is Image"
 ]
 },
 "TaxonKey is Aves"
 ]
}

 The dataset's 14716 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0276308-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.znz4uc
title: Occurrence Download

description: A dataset containing 1082 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Otus megalotis (Walden, 1875)"
 ]
}

 The dataset includes 1082 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057346-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kffpyz
title: Occurrence Download

description: A dataset containing 637398 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Données ONF faune-flore-fonge"
 ]
}

 The dataset includes 637398 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009239-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4nsajj
title: Occurrence Download

description: A dataset containing 19377 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "OccurrenceStatus is Present",
 "TaxonKey is Alligator mississippiensis (Daudin, 1801)"
 ]
}

 The dataset includes 19377 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043250-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.58sfdu
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Begonia setifolia Irmsch."
 ]
}

 The dataset includes 17 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057269-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0y5e4g
title: Occurrence Download

description: A dataset containing 1139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 {
 "or" : [
 "Country is Mexico",
 "Country is Colombia",
 "Country is Costa Rica",
 "Country is Nicaragua",
 "Country is Puerto Rico",
 "Country is Ecuador",
 "Country is Cuba",
 "Country is Venezuela (Bolivarian Republic of)"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Crescentia L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1139 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007784-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zsw5xc
title: Occurrence Download

description: A dataset containing 156001 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Sciurus carolinensis Gmelin, 1788"
 ]
}

 The dataset includes 156001 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0276315-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mqupuy
title: Occurrence Download

description: A dataset containing 497 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Synallaxis maranonica Taczanowski, 1879"
 ]
}

 The dataset includes 497 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057307-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cut6lf
title: Occurrence Download

description: A dataset listing the 11 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 {
 "or" : [
 "Country is Mexico",
 "Country is Colombia",
 "Country is Costa Rica",
 "Country is Nicaragua",
 "Country is Puerto Rico",
 "Country is Ecuador",
 "Country is Cuba",
 "Country is Venezuela (Bolivarian Republic of)"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Crescentia L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 11 records were derived from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007783-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d2jpq9
title: Occurrence Download

description: A dataset containing 1418 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alsophila podophylla Hook."
 ]
}

 The dataset includes 1418 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218732-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f6d9w5
title: Occurrence Download

description: A dataset containing 1165 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Megastictus margaritatus (P.L.Sclater, 1855)"
 ]
}

 The dataset includes 1165 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057353-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.