cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5454289.v1
title: Craig2017rawDataAndCode

description: raw data & code for Craig 2017 (PNAS). All code is written in matlab. <br>Raw data events are indexed according to event number. Within each event is the raw data and a list of the experimental conditions. Also included is a readMe describing the data. <br>Analysis is run from the central script hel308stepScript2.mat.
DOI: 10.17632/bnv8fn48g6
title: Dataset for: KASRA: A Kriging-based Adaptive Space Reduction Algorithm for Global Optimization of Computationally Expensive Black-Box Constrained Problems

description: The raw dataset obtained during performance tests of the proposed surrogate-based global optimization algorithm (KASRA) on all testing problems mentioned in the paper is included and stored in some zipped files. The dataset is relevant to the illustrative examples and Tables 1−4 in sections 5 and 6 of the paper. Besides, all MATLAB plots in fig-format are presented.
DOI: 10.17632/pt3y2vc4st
title: Supplemental Material: Trends in dermatologic procedures performed by dermatologists and advanced practice clinicians among Medicare beneficiaries from 2012 to 2020

description: Supplemental materials for a retrospective cohort study conducted using the Medicare Part B Physician/Supplier Procedure Summary Master Files from the Centers for Medicare & Medicaid Services. 

Link to the dataset: https://data.cms.gov/summary-statistics-on-use-and-payments/physiciansupplier-procedure-summary
DOI: 10.6084/m9.figshare.13071917.v1
title: Supplementary Material for: Optimizing the Decellularized Porcine Liver Scaffold Protocol

description: There are few existing methods for shortening the decellularization period for a human-sized whole-liver scaffold. Here, we describe a protocol that enables effective decellularization of the liver obtained from pigs weigh 120 ± 4.2 kg within 72 h. Porcine livers (approx. 1.5 kg) were decellularized for 3 days using a combination of chemical and enzymatic decellularization agents. After trypsin, sodium deoxycholate, and Triton X-100 perfusion, the porcine livers were completely translucent. Our protocol was efficient to promote cell removal, the preservation of extracellular matrix (ECM) components, and vascular tree integrity. In conclusion, our protocol is efficient to promote human-sized whole-liver scaffold decellularization and thus useful to generate bioengineered livers to overcome the shortage of organs.
DOI: 10.17632/3v9mcsvcd2
title: Indoor Environment Dataset Based on RSSI Collected with Bluetooth Devices

description: The dataset includes 11 files, each representing the signal power data collected using a specific mobile device in an indoor setting.

There is also a file with details about the positions of fixed anchor nodes in the scenario.

Each file contains these pieces of information:

WAPS: Signal strength data for corresponding anchor nodes (WAPS).
LABEL: The map position where the signal strengths were collected.
X, Y: Geographic coordinates of the labels.
DEVICE: The mobile device used for data collection.
ROOM_ID: Identification of the room where the data was gathered.
DOI: 10.17632/frndp7g473
title: Data for, Woody Hummock Species in Southeast Florida Depression Marshes with Special Attention to Elevated Dioecy

description: These are the data sets for the manuscript in the dataset title.  They represent surveys of hummock species in SE Florida depression marshes, and also species penetrating Serenoa repens thickets.   The data show exceptionally high dioecy rates in the hammock flora,  with a very small sample, and in three different Serenoa thickets.  The data set includes a list of field sites, all in Pam Beach and Martin counties, Florida.   Further explanation is in the manuscript.
DOI: 10.17632/njtcwdd5px
title: Trastuzumab Deruxtecan (T-DXd) in metastatic breast cancer with different HER2 expression levels: a real-world effectiveness and safety study

description: In this study, we aimed to investigate the effectiveness and safety of T-DXd in different HER2 expression patients in real-word setting.
DOI: 10.17632/nxm7bnns98
title: Dataset for Protocol for rapid assessment and visualization of cell microaggregate formation in whole blood by Imaging Flow Cytometry

description: Exported statistical data necessary for the reproduction of featured figures.
DOI: 10.6084/m9.figshare.22193080.v1
title: <b>Temporal precipitation variation and leaf stoichiometric changes mediate the </b><b>dynamics of tree growth responses to nitrogen addition over time</b>

description: This is the raw data of tree growth and ecosystem P cycling in a boreal forest with long-term N addition.
DOI: 10.17632/smj68n5xrt
title: Supplemental material for JAAD publication titled - Longitudinal Brush Pigmentation on the Hyponychium, a Dermoscopic Feature Observed in Pediatric Nail Matrix Nevi.

description: Supplemental materials for, Title: Longitudinal Brush Pigmentation on the Hyponychium, a Dermoscopic Feature Observed in Pediatric Nail Matrix Nevi." Authors: Jongeun Lee, MD, Sewon Park, MD, Dongyoun Lee, MD, PhD Kee-Taek Jang, MD, PhD and Eun Ji Kwon, MD Supplementary figure 1: Dermoscopy images of 15 melanonychia cases with longitudinal brush pigmentation. All cases show Hutchinson’s sign at the hyponychium with longitudinal brush pigmentation which is aligned parallel to the longitudinal direction. Supplementary figure 2: Clinical image of patient #10 (A-C) and patient #3 (D-G). (A) Melanonychia is seen on the right 3rd fingernail. (B) Hutchinson’s signs on both proximal nail fold and hyponychium are observed. (C) 3 mm-punch biopsy at hyponychium with LBP reveals a nested growth pattern of banal melanocytes predominantly at the dermo-epidermal junction. H&E X200. (D) Melanonychia accompanying nail dystrophy is seen on the left 4th fingernail. (E) Dermoscopic image shows longitudinal brush pigmentation on the hyponychium. (F) 3 mm-punch biopsy on LBP initially showed some melanocytes with slight atypia, however revealed a nested growth pattern of banal melanocytes in subsequent serial sections (G). H&E X200.
DOI: 10.6084/m9.figshare.14207093.v1
title: Supplementary tables R1 from Ecological opportunity and the rise and fall of crocodylomorph evolutionary innovation

description: Supplementary table S1-S4
DOI: 10.6084/m9.figshare.21354000.v1
title: Red blood cell dataset

description: 10% of red blood cell dataset are shared here. 600 patches of complex amplitude and 600 patches of diffraction intensity patterns measured at 24mm are shared.
DOI: 10.6084/m9.figshare.9108395.v1
title: Bagel results

description: Data folder containing BAGEL (essentiality) results.
DOI: 10.25422/azu.data.14270627.v1
title: Extended Spring Indices, Continental United States, 1981 - Current Year

description: The USA National Phenology Network has available a series of gridded products enabling researchers to analyze historical and contemporary data related to the Extended Spring Indices. The Extended Spring Indices are mathematical models that predict the "start of spring" (timing of leaf out or bloom for species active in early spring) at a particular location (Schwartz 1997, Schwartz et al. 2006, Schwartz et al. 2013). These models were constructed using historical observations of the timing of first leaf and first bloom in a cloned lilac cultivar (<i>Syringa x chinensis</i> 'Red Rothomagensis') and two cloned honeysuckle cultivars (<i>Lonicera tatarica</i> 'Arnold Red' and <i>L. korolkowii </i>'Zabelii'). Primary inputs to the model are temperature and weather events, beginning January 1 of each year (Ault et al. 2015). The model output is the day of year that a particular location met the requirements of one of the Spring Index models (First Leaf or First Bloom).As the Extended Spring Index models are based on individual models for each of three calibration species, model output is available for each of these species individually, or as an average of the three species. The original Spring Indices (Schwartz 1997) included a chilling requirement. In a more recent version of the model (Schwartz et al. 2013), referred to as the Extended Spring Indices, the chilling requirement was excluded, allowing the index to be extended across the entire U.S. Spring index products in the USA National Phenology Network's gridded data product suite are based on the Extended Spring Indices.The data are accessible via the USA-NPN Geoserver (user access facilitated by the Geoserver Request Builder: https://www.usanpn.org/geoserver-request-builder), and a subset can be viewed in the USA-NPN Visualization Tool (https://www.usanpn.org/data/visualizations).<i>For all inquiries regarding this dataset, please contact the USA-NPN. This data is subject to the USA-NPN's </i><i>Data Use Policy.</i><br>
DOI: 10.6084/m9.figshare.28229858.v2
title: Staphylococcus aureus wgMLST scheme.

description: Backup of BioNumerics Staphylococcus aureus wgMLST scheme.
DOI: 10.17632/9nf22pn729
title: Data for "Reconstruction of the Paleo-Ocean Environment Using Mineralogical and Geochemical Analyses of Mixed-Type Ferromanganese Nodules from the Tabletop of Western Pacific Magellan Seamount "

description: This data set includes Synchrotron X-ray diffraction data and micro X-ray fluorscence data of Fe-Mn nodules
XRD05_L1 - L5. 
Results of Synchrotron X-ray diffraction data of MGND01
XRD23_L1 - L6. 
Results of Synchrotron X-ray diffraction data of MGND02
XRD96_L1 - L7. 
Results of Synchrotron X-ray diffraction data of MGND03
XRF_05
Results of Quantitative analysis data using micro X-ray fluorscence m4 tornado of MGND01
XRF_23
Results of Quantitative analysis data using micro X-ray fluorscence m4 tornado of MGND02
XRF_96
Results of Quantitative analysis data using micro X-ray fluorscence m4 tornado of MGND03
DOI: 10.17632/g4pvnwt4jc
title: An empirical evaluation of machine learning techniques to classify code comprehension based on EEG data: Supplementary material

description: This is a supplementary material used to perform the evaluation of the classification of code comprehension based on EEG Data. This dataset includes the tasks, EEG data, and the machine learning source code to reproduce the results of the classification of developers' code comprehension based on EEG data.
DOI: 10.17632/mky7757m55
title: "Environmental Optimization of the Charge of Battery Electric Vehicles": Code and supplementary data

description: This dataset contains interactive HTML files for all figures that have been created as such.
Furthermore, JupyterNoteboocks and relevant input datasets are provided that allow to reproduce all results of the year 2019. Input data for the other years are not publicly available.
In addition, JupyterNoteboocks and data are provided to reproduce all figures of the paper.
DOI: 10.17632/rs3t44yj4f
title: Supplementary table I. Concomitant immunomodulating therapy

description: IQR, interquartile range; no, number; SD, standard deviation; In total, 103 patients used systemic immunomodulating therapy after starting dupilumab. Eighteen of these patients were using systemic immunomodulating therapy from start dupilumab till study cut-off point: ciclosporin (n=6), azathioprine (n=2), methotrexate (n=4), mycophenolic acid/mycophenolate mofetil (n=3), systemic corticosteroids (n=3). Two patients stopped for respectively 14 and 33 days with systemic corticosteroids treatment and then restarted with systemic corticosteroids which they were still using at the end of study. This table displays the 83 patients that discontinued systemic concomitant immunomodulating therapy during the study.
DOI: 10.6084/m9.figshare.23607639.v1
title: patient08.rar

description: A Patient with fundus images that taken by Ret-cam.
DOI: 10.6084/m9.figshare.24041712.v1
title: Root plasticity benefits a global invasive species in eutrophic coastal wetlands

description: 1. Invasive species usually benefit more than native species from increases in nutrient availability. Phenotypic plasticity in aboveground traits has often been used to explain the superiority of invasive species in response to increased nutrient availability. However, it remains largely unclear whether and how root trait plasticity predicts the ascendancy of invasive plants following nutrient enrichment.2. Using a 3-year field nitrogen (N) enrichment experiment, we evaluated the effect of N enrichment on the root traits and growth performance of a globally invasive cordgrass, Spartina alterniflora, and a co-occurring native plant, Phragmites australis.3. We found that S. alterniflora exhibited high plasticity in root traits in response to N enrichment, whereas the root traits of P. australis largely remained unresponsive to fertilization. Specifically, in response to N enrichment, S. alterniflora decreased soil exploitation with a lower length ratio of lateral to adventitious roots. However, the root traits of S. alterniflora shifted to be more acquisitive under N enrichment with higher root N concentrations and lower root tissue density. Moreover, there were a series of anatomical adjustments in the adventitious roots of S. alterniflora in response to N enrichment, such as a thicker diameter, lower living cortex-to-stele ratio and higher xylem-to-root area ratio. These plastic adjustments in root traits jointly resulted in fast nutrient uptake and transportation in S. alterniflora, boosting its aboveground productivity under fertile N conditions.4. Our study demonstrated that greater plasticity in root traits enables a globally successful invasive species to take advantages of increased nutrient availability, potentially increasing its invasiveness. We suggest that consideration of root traits can improve our understanding of belowground mechanisms underlying invasion under global nutrient enrichment.
DOI: 10.6084/m9.figshare.24589464.v3
title: Demagnetization results and rock magnetic results of the Relu Basin in the southeastern Tibetan Plateau

description: The paleomagnetic datasets and rock magnetic results were obtained from Eocene sedimentary strata in the Relu Basin, in the southeastern Tibetan Plateau.
DOI: 10.6084/m9.figshare.9631478.v1
title: Additional file 1: of Evolution of female promiscuity in Passerides songbirds

description: Accession numbers for all species used to create the phylogenetic tree. All sequences downloaded from the GenBank ( http://www.ncbi.nlm.nih.gov/genbank ) or BOLD ( http://www.boldsystems.org ) database. In two instances (marked in yellow) sequences were lacking from the target species, and we used surrogate sequences from a closely related species. (XLSX 26 kb)
DOI: 10.17632/48mrkmtwr5
title: Measurement Data for Hitachi compressors

description: This data include the measurement results for the compressors Hitachi WHP01900BCK and WHP3240BSK and the Inverter LSCONTROL SpeedControl 1045E.
DOI: 10.17632/b8hvm74pgt
title: Creation of Dummy Variables for Economic Events and E-views Analysis

description: Data involves the creation of dummy variables for select economic events and results obtained using E-views.
DOI: 10.17632/y3zx2fht3c
title: Benchmark dataset and results for the Satellite Mission Planning Problem

description: This dataset contains the instances and results provided in the paper titled as "Quantum Optimization Methods for Satellite Mission Planning", which is an extension of [1].

[1] Makarov, A., Taddei, M. M., Osaba, E., Franceschetto, G., Villar-Rodriguez, E., & Oregi, I. (2023, November). Optimization of Image Acquisition for Earth Observation Satellites via Quantum Computing. In International Conference on Intelligent Data Engineering and Automated Learning (pp. 3-14). Cham: Springer Nature Switzerland.
DOI: 10.6084/m9.figshare.11913243.v1
title: Face recognition deficits in a patient with Alzheimer’s disease: amnesia or agnosia?

description: Face recognition difficulties are frequently reported in Alzheimer’s disease (AD) and often attributed to memory impairment. However, it has been hypothesized that failure in identifying familiar people could also be due to deficit in higher-level perceptual processes since there is evidence showing a reduced inversion effect for faces but not for cars in AD. To address the involvement of these higher processes, we investigated ERP neural correlates of faces in an AD patient. AD patient MCG showing a face recognition deficit participated in the EEG study. Eight healthy participants were tested as control group. Participants performed different tasks following stimulus presentation. In experiment 1, they should indicate whether the stimulus was either a face or a house, or a scrambled image. In experiments 2 and 3, they should discriminate between upright and inverted faces (Experiment 2: faces with neutral or fearful expressions; Experiment 3: famous or unfamiliar faces). Electrophysiological results reveal that the typical face-specific modulation of the N170 component, thought to reflect the structural encoding of faces, was not present in MCG, despite being affected by the emotional content of the face implicitly processed by MCG. Conversely, the N400 component, thought to reflect the recruitment of the memory trace of the face identity, was found to be modulated implicitly in MCG. These results suggest a possible role of gnosic processes in face recognition deficits in AD.
DOI: 10.6084/m9.figshare.23929950.v2
title: Source Data.xlsx

description: This is the source data file of the <i>Nature Communications</i> manuscript 'Earthquake-enhanced dissolved carbon cycles in ultra-deep ocean sediments'.
DOI: 10.6084/m9.figshare.24208632.v1
title: S011.zip

description: Data for S011
DOI: 10.6084/m9.figshare.28020914.v1
title: Supplementary materials

description: Supporting data for: "The Blueprint for Survival: The Blue Dasher Dragonfly as a Model for Urban Adaptation." Includes the “Gadma” parameters file, rMarkdown script used for statistical analysis, images, and phyllip file use for COI analyses.
DOI: 10.6084/m9.figshare.9208979.v1
title: 1000 genomes (phase 3) files with SNPs in common with HapMap3

description: This provides 2493 individuals of the 1000 genomes project (phase 3) in PLINK bed/bim/fam format. The SNPs are restricted to the ones in common with HapMap3 (~1.4M).<br><br>The R code that has been used to generate these data is also provided.<br><br>Do not forget to cite the 1000 genomes project.<br>TODO: add citation + mine<br>
DOI: 10.17632/xp9p6k9v5k
title: Data for: Unhappy and addicted to your phone? - higher mobile phone use is associated with lower well-being

description: correlational data set including well-being, mindfulness, satisfaction with life, and mobile phone use
DOI: 10.6084/m9.figshare.1427397.v1
title: Demultiplexed reads from Aquarium Project

description: These are the demultiplexed and merged 16S reads for the aquarium project from the Eisen Lab at UC Davis. Publication information forthcoming.
DOI: 10.6084/m9.figshare.21510426.v1
title: Supplementary Material for: Network Analysis of Gut Microbiota Including <b><i>Fusobacterium</i></b> and Oral Origin Bacteria and Their Distribution on Tumor Surface, Normal Mucosa, and in Feces in Patients with Colorectal Cancer

description: <b><i>Introduction:</i></b> <i>Fusobacterium</i> and several bacteria are reported to be associated with colorectal cancer (CRC). However, their relationship and whether they cause CRC or are just adapted to the cancerous environment is not known. We approached this subject by investigating the correlation and distribution of the bacteria throughout the colon in patients with CRC and elucidated the relationship between microbiota and CRC. <b><i>Methods:</i></b> Twenty-five patients with CRC who underwent colonoscopy for endoscopic submucosal dissection or surgery were prospectively enrolled. Fecal samples were taken before bowel preparation, and mucosal samples were collected from three sites (tumor surface, tumor-adjacent mucosa, and cecum) during colonoscopy using a cytology brush. The microbiota was identified and analyzed by sequencing of the 16S rRNA gene of the V3–V4 region. We evaluated the correlation between the bacteria based on network analysis and the distribution of <i>Fusobacterium</i> in the colon. <b><i>Results:</i></b> A network consisting of many bacteria was found in all sites; especially, oral origin bacteria including <i>Fusobacterium</i> formed a positively correlated network on tumor surface. <i>Streptococcus</i> showed a significantly higher relative abundance on tumor surface than in feces. The relative abundance of <i>Fusobacterium</i> had significant positive correlations between tumor surface and feces, tumor-adjacent mucosa, and cecum. <b><i>Conclusion:</i></b> In patients with CRC, many bacteria were correlated with each other, and <i>Fusobacterium</i> and oral origin bacteria formed a positively correlated network on tumor surface. <i>Fusobacterium</i> was equally distributed on tumor surface and throughout the lumen and mucus in the colon. In the colon where <i>Fusobacterium</i> is widely distributed, <i>Fusobacterium</i> would adhere to the tumor surface and be correlated with oral origin bacteria to make a microenvironment that is favorable for CRC.
DOI: 10.6084/m9.figshare.22732523.v1
title: Matminer descriptors for JARVIS-DFT

description: Prepared using: https://github.com/usnistgov/jarvis_leaderboard/blob/main/jarvis_leaderboard/benchmarks/matminer_lgbm/run.py <br> JARVIS-DFT: https://jarvis.nist.gov/jarvisdft/ <br> MatMiner: https://github.com/hackingmaterials/matminer <br> JARVIS-Leaderboard: https://pages.nist.gov/jarvis_leaderboard/ <br> Code reference: <br> https://github.com/mathsphy/paper-ml-robustness-material-property <br> https://www.nature.com/articles/s41524-023-01012-9
DOI: 10.6084/m9.figshare.28159286.v1
title: Rosa leavigate genome

description: Rosa laevigata is a common medicinal and edible plant, and its fruits are rich in vitamin C. The genomes of Rosa sterilis and Rosa roxburghii from the same genus Rosa have been published, and in order to resolve the origin and evolution of vitamin C biosynthesis, we performed a study of Rosa laevigata genome sequencing and assembly.
DOI: 10.17632/yt7dd5mx8p
title: MCSD-100

description: MCSD100 is a dataset for object storage performance testing, based on the MSCOCO and semEval2017 datasets used in previous studies (Sherlock in OSS). The dataset is designed to evaluate the performance of the Open-Stack Swift cloud storage system, specifically its Erasure Coding policy and fragmentation capabilities. The dataset includes 25 files each of text, mp3, jpeg, and mp4 formats, representing real-world scenarios. By analyzing the behavior of these files under different EC schemes, the researchers gain valuable insights into OpenStack Swift's storage mechanisms. The dataset is openly available for reproducibility and further studies. The findings highlight OpenStack Swift's efficiency in handling different file types and sizes, making it suitable for enterprise data management, multimedia content platforms, image hosting, long-term data preservation, and collaborative content creation.
DOI: 10.6084/m9.figshare.20669979.v1
title: Unprocessed SEM images

description: unprocessed SEM images from slice and view scans -- see paper for details on image processing and segmentation steps taken to extract quantitative data
DOI: 10.6084/m9.figshare.22827974.v1
title: Discovery_dataset_disgust

description: This data was used to train the subjective disgust experience signature, details see Gan et al. 2023 BioRxiv.
DOI: 10.6084/m9.figshare.24458641.v1
title: HEV database

description: Extrahepatic Hepatitis E virus (HEV) replicates in other body organs, tissue such as the cerebrospinal fluid and it is detected by molecular assays such as RT-PCR and PCR. Sanger sequencing identified HEV genotype 3 in the CSF of individuals with extrahepatic symptoms.
DOI: 10.6084/m9.figshare.26527306.v1
title: The repertoire of repeats in <i>P. meadii </i>P 19 genome

description: The percentage of repeats identified in the <i>Phytophthora meadii</i> genome was 29.66%