cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.858779.v1
title: 7D Neuron use_traubexact = 1

description: Traying to reproduce fig 7D from "A single column thalamocortical network model" (Traub et al 2005) on Neuron version of Traub model.Files: fig.png - rasterplot, out.dat - data for rasterplot, test7_whole.png voltage trace from suppyrRS, suppyrFRB, tuftIB and spinystellate, GROUCHO... suppyrRS, suppyrFRB, tuftIB, spinystellate, tuftRS - voltage (! only voltage) data from soma of cell1 from the population diff_init.txt, difference in init.hoc file between this case and 7A Neuron use_traubexac = 0, the rest of the files is like in 7A use_traubexac = 0 case constant time step use_traubexac = 1 awake = 0 tstop = 1600 ms dt was 0.025
DOI: 10.6084/m9.figshare.858769
title: 7C Neuron use_traubexac = 1

description: Traying to reproduce fig 7C from "A single column thalamocortical network model" (Traub et al 2005) on Neuron version of Traub model.Files: fig.png - rasterplot, out.dat - data for rasterplot, test7_whole.png voltage trace from suppyrRS, suppyrFRB, tuftIB and spinystellate, GROUCHO... suppyrRS, suppyrFRB, tuftIB, spinystellate, tuftRS - voltage (! only voltage) data from soma of cell1 from the population diff_init.txt, difference in init.hoc file between this case and 7A Neuron use_traubexac = 0, the rest of the files is like in 7A use_traubexac = 0 case constant time step use_traubexac = 1 awake = 0 tstop = 1600 ms dt was 0.025
DOI: 10.6084/m9.figshare.857596
title: Supplementary table I

description: Orphans in subgenome III of <em>Br</em>
DOI: 10.6084/m9.figshare.857597
title: During the comparison of genomes, orphaned conserved noncoding sequences may signify regulatory novelty

description: Supplementary data for During the comparison of genomes, orphaned conserved noncoding sequences may signify regulatory novelty
DOI: 10.6084/m9.figshare.857595
title: Supplementary table II

description: Orphans in all three subgenomes in <em>Br</em>
DOI: 10.6084/m9.figshare.857596.v1
title: Supplementary table I

description: Orphans in subgenome III of <em>Br</em>
DOI: 10.6084/m9.figshare.858769.v1
title: 7C Neuron use_traubexac = 1

description: Traying to reproduce fig 7C from "A single column thalamocortical network model" (Traub et al 2005) on Neuron version of Traub model.Files: fig.png - rasterplot, out.dat - data for rasterplot, test7_whole.png voltage trace from suppyrRS, suppyrFRB, tuftIB and spinystellate, GROUCHO... suppyrRS, suppyrFRB, tuftIB, spinystellate, tuftRS - voltage (! only voltage) data from soma of cell1 from the population diff_init.txt, difference in init.hoc file between this case and 7A Neuron use_traubexac = 0, the rest of the files is like in 7A use_traubexac = 0 case constant time step use_traubexac = 1 awake = 0 tstop = 1600 ms dt was 0.025
DOI: 10.6084/m9.figshare.857595.v1
title: Supplementary table II

description: Orphans in all three subgenomes in <em>Br</em>
DOI: 10.6084/m9.figshare.856778
title: Computational pipeline to track the evolutionary fates of arabidopsis conserved noncoding sequences through a paleohexaploidy and into the genomes of its close relative, Brassica rapa: PL3 Genespace Tweaker + Mapping Over) Supplemental Data

description: Supplemental data for : Computational pipeline to track the evolutionary fates of arabidopsis conserved noncoding sequences through a paleohexaploidy and into the genomes of its close relative, Brassica rapa: PL3 Genespace Tweaker + Mapping Over)
DOI: 10.6084/m9.figshare.856772
title: The fate of Arabidopsis thaliana homeologous CNSs and their motifs in the paleohexaploid Brassica rapa Supplemental Data

description: Supplemental data for " The fate of Arabidopsis thaliana homeologous CNSs and their motifs in the paleohexaploid Brassica rapa"
DOI: 10.6084/m9.figshare.856753
title: 7B Neuron use_traubexac = 1

description: traying to reproduce fig 7B from "A single column thalamocortical network model" (Traub et al 2005) on Neuron version of Traub model. Files: fig.png - rasterplot, out.dat - data for rasterplot, test7_whole.png voltage trace from suppyrRS, suppyrFRB, tuftIB and spinystellate, GROUCHO... suppyrRS, suppyrFRB, tuftIB, spinystellate, tuftRS - voltage (! only voltage) data from soma of cell1 from the population diff_init.txt, difference in init.hoc file between this case and 7A Neuron use_traubexac = 0, the rest of the files is like in 7A use_traubexac = 0 case constant time step use_traubexac = 1 awake = 0 tstop = 1600 ms dt was 0.025
DOI: 10.6084/m9.figshare.856773
title: tonta-publications

description: my publications on LIS
DOI: 10.6084/m9.figshare.856778.v2
title: Computational pipeline to track the evolutionary fates of arabidopsis conserved noncoding sequences through a paleohexaploidy and into the genomes of its close relative, Brassica rapa: PL3 Genespace Tweaker + Mapping Over) Supplemental Data

description: Supplemental data for : Computational pipeline to track the evolutionary fates of arabidopsis conserved noncoding sequences through a paleohexaploidy and into the genomes of its close relative, Brassica rapa: PL3 Genespace Tweaker + Mapping Over)
DOI: 10.6084/m9.figshare.856743
title: 7A Neuron use_traubexac = 1

description: traying to reproduce fig 7A from "A single column thalamocortical network model" (Traub et al 2005) on Neuron version of Traub model. Files: fig.png - rasterplot, out.dat - data for rasterplot, test7_whole.png voltage trace from suppyrRS, suppyrFRB, tuftIB and spinystellate, GROUCHO... suppyrRS, suppyrFRB, tuftIB, spinystellate, tuftRS - voltage (! only voltage) data from soma of cell1 from the population diff_init.txt, difference in init.hoc file between this case and 7A Neuron use_traubexac = 0, the rest of the files is like in 7A use_traubexac = 0 case constant time step use_traubexac = 1 awake = 0 tstop = 1600 ms dt was 0.025
DOI: 10.6084/m9.figshare.856753.v1
title: 7B Neuron use_traubexac = 1

description: traying to reproduce fig 7B from "A single column thalamocortical network model" (Traub et al 2005) on Neuron version of Traub model. Files: fig.png - rasterplot, out.dat - data for rasterplot, test7_whole.png voltage trace from suppyrRS, suppyrFRB, tuftIB and spinystellate, GROUCHO... suppyrRS, suppyrFRB, tuftIB, spinystellate, tuftRS - voltage (! only voltage) data from soma of cell1 from the population diff_init.txt, difference in init.hoc file between this case and 7A Neuron use_traubexac = 0, the rest of the files is like in 7A use_traubexac = 0 case constant time step use_traubexac = 1 awake = 0 tstop = 1600 ms dt was 0.025
DOI: 10.6084/m9.figshare.856743.v1
title: 7A Neuron use_traubexac = 1

description: traying to reproduce fig 7A from "A single column thalamocortical network model" (Traub et al 2005) on Neuron version of Traub model. Files: fig.png - rasterplot, out.dat - data for rasterplot, test7_whole.png voltage trace from suppyrRS, suppyrFRB, tuftIB and spinystellate, GROUCHO... suppyrRS, suppyrFRB, tuftIB, spinystellate, tuftRS - voltage (! only voltage) data from soma of cell1 from the population diff_init.txt, difference in init.hoc file between this case and 7A Neuron use_traubexac = 0, the rest of the files is like in 7A use_traubexac = 0 case constant time step use_traubexac = 1 awake = 0 tstop = 1600 ms dt was 0.025
DOI: 10.6084/m9.figshare.856778.v1
title: : Computational pipeline to track the evolutionary fates of arabidopsis conserved noncoding sequences through a paleohexaploidy and into the genomes of its close relative, Brassica rapa: PL3 Genespace Tweaker + Mapping Over) Supplemental Data

description: Supplemental data for : Computational pipeline to track the evolutionary fates of arabidopsis conserved noncoding sequences through a paleohexaploidy and into the genomes of its close relative, Brassica rapa: PL3 Genespace Tweaker + Mapping Over)
DOI: 10.6084/m9.figshare.856702
title: GDP vs Science

description: Plot and data showing the relationship between GDP (ppp per capita) and number of scientists (scientists/engineers per million). Original data and information from http://www.sciencemag.org/content/342/6160/817.short and data kindly provided by https://twitter.com/amarcobio
DOI: 10.6084/m9.figshare.856713
title: Segmented anisotropic ssTEM dataset of neural tissue

description: We provide two image stacks where each contains 20 sections from serial section Transmission Electron Microscopy (ssTEM) of the Drosophila melanogaster third instar larva ventral nerve cord. Both stacks measure approx. 4.7 x 4.7 x 1 microns with a resolution of 4.6 x 4.6 nm/pixel and section thickness of 45-50 nm. In addition to the raw image data, we provide for the first stack a dense labeling of neuron membranes (including orientation and junction), mitochondria, synapses and glia/extracellular space. The first stack serves as a training dataset, and a second stack of the same dimension can be used as a test dataset. All the data and further information is available in the GitHub repository linked below.
DOI: 10.6084/m9.figshare.856722
title: 7C Neuron use_traubexac = 0

description: traying to reproduce fig 7C from "A single column thalamocortical network model" (Traub et al 2005) on Neuron version of Traub model. Files: fig.png - rasterplot, out.dat - data for rasterplot, test7.png voltage trace from suppyrRS, suppyrFRB, tuftIB and spinystellate, GROUCHO... suppyrRS, suppyrFRB, tuftIB, spinystellate, tuftRS - voltage (! only voltage) data from soma of cell1 from the population diff_init.txt, difference in init.hoc file between this case and 7A Neuron use_traubexac = 0, the rest of the files is like in 7A case constant time step use_traubexac = 0 awake = 0 tstop = 1600 ms dt was 0.025
DOI: 10.6084/m9.figshare.856732
title: 7D Neuron use_traubexac = 0

description: traying to reproduce fig 7D from "A single column thalamocortical network model" (Traub et al 2005) on Neuron version of Traub model. Files: fig.png - rasterplot, out.dat - data for rasterplot, test7.png voltage trace from suppyrRS, suppyrFRB, tuftIB and spinystellate, GROUCHO... suppyrRS, suppyrFRB, tuftIB, spinystellate, tuftRS - voltage (! only voltage) data from soma of cell1 from the population diff_init.txt, difference in init.hoc file between this case and 7A Neuron use_traubexac = 0, the rest of the files is like in 7A case constant time step use_traubexac = 0 awake = 0 tstop = 1600 ms dt was 0.025
DOI: 10.6084/m9.figshare.856772.v1
title: Chapter 2 Supplemental Data

description: Supplemental data for " The fate of Arabidopsis thaliana homeologous CNSs and their motifs in the paleohexaploid Brassica rapa"
DOI: 10.6084/m9.figshare.856732.v1
title: 7D Neuron use_traubexac = 0

description: traying to reproduce fig 7D from "A single column thalamocortical network model" (Traub et al 2005) on Neuron version of Traub model. Files: fig.png - rasterplot, out.dat - data for rasterplot, test7.png voltage trace from suppyrRS, suppyrFRB, tuftIB and spinystellate, GROUCHO... suppyrRS, suppyrFRB, tuftIB, spinystellate, tuftRS - voltage (! only voltage) data from soma of cell1 from the population diff_init.txt, difference in init.hoc file between this case and 7A Neuron use_traubexac = 0, the rest of the files is like in 7A case constant time step use_traubexac = 0 awake = 0 tstop = 1600 ms dt was 0.025
DOI: 10.6084/m9.figshare.856699
title: 7B Neuron use_traubexac = 0

description: traying to reproduce fig 7B from "A single column thalamocortical network model" (Traub et al 2005) on Neuron version of Traub model. Files: fig.png - rasterplot, out.dat - data for rasterplot, test7.png voltage trace from suppyrRS, suppyrFRB, tuftIB and spinystellate, GROUCHO... suppyrRS, suppyrFRB, tuftIB, spinystellate, tuftRS - voltage (! only voltage) data from soma of cell1 from the population diff_init.txt, difference in init.hoc file between this case and 7A Neuron use_traubexac = 0, the rest of the files is like in 7A case constant time step use_traubexac = 0 awake = 0 tstop = 1600 ms dt was 0.025
DOI: 10.6084/m9.figshare.856700
title: GDV vs Science

description: Data showing the relationship between GDP (ppp per capita) and number of scientists (scientists/engineers per million).
DOI: 10.6084/m9.figshare.856722.v1
title: 7C Neuron use_traubexac = 0

description: traying to reproduce fig 7C from "A single column thalamocortical network model" (Traub et al 2005) on Neuron version of Traub model. Files: fig.png - rasterplot, out.dat - data for rasterplot, test7.png voltage trace from suppyrRS, suppyrFRB, tuftIB and spinystellate, GROUCHO... suppyrRS, suppyrFRB, tuftIB, spinystellate, tuftRS - voltage (! only voltage) data from soma of cell1 from the population diff_init.txt, difference in init.hoc file between this case and 7A Neuron use_traubexac = 0, the rest of the files is like in 7A case constant time step use_traubexac = 0 awake = 0 tstop = 1600 ms dt was 0.025
DOI: 10.6084/m9.figshare.856772.v3
title: The fate of Arabidopsis thaliana homeologous CNSs and their motifs in the paleohexaploid Brassica rapa Supplemental Data

description: Supplemental data for " The fate of Arabidopsis thaliana homeologous CNSs and their motifs in the paleohexaploid Brassica rapa"
DOI: 10.6084/m9.figshare.856772.v2
title: Chapter 2 Supplemental Data

description: Supplemental data for " The fate of Arabidopsis thaliana homeologous CNSs and their motifs in the paleohexaploid Brassica rapa"
DOI: 10.6084/m9.figshare.856684
title: The structural peculiarities of condensed DNA micro- and nanoparticles formed in PCR

description: Studies of DNA condensation have opened new perspectives in biotechnology and medicine. DNA condensation induced by polyamines or trivalent metal ions <i>in vitro</i> at room temperature has been investigated in detail. Our recent studies have demonstrated Mg<sup>2+</sup>-mediated formation of DNA condensates during the PCR. In this study, we report the unique morphology and fine structure of PCR-generated condensed DNA particles using electron and atomic force microscopy. The principal morphologies of studied DNA condensates are 3D particles of micrometer dimensions, oval microdisks of nanometer thickness, filaments, and compact nano-sized particles. SEM examinations have revealed a new structural type of spherical and elliptical 3D microparticles formed by numerous definitely oriented microdisks and their segments. AFM revealed a granular structure of the microdisk surface and the smallest nano-sized disks and thinnest nanofibrils – that appear to be the primary products of DNA condensation during the PCR. We suggest that the formation of DNA nanofibrils and nanodisks in PCR occurs due to Mg<sup>2+</sup> – mediated intermolecular (lateral) and intramolecular condensation of ssDNA. Aggregation of elementary nanodisks in the course of thermal PCR cycles, occurring both by magnesium cations and via complementary interactions, give a rise to large nano-sized aggregates and more complex microparticles.
DOI: 10.6084/m9.figshare.856700.v1
title: GDV vs Science

description: Data showing the relationship between GDP (ppp per capita) and number of scientists (scientists/engineers per million).
DOI: 10.6084/m9.figshare.856684.v2
title: The structural peculiarities of condensed DNA micro- and nanoparticles formed in PCR

description: Studies of DNA condensation have opened new perspectives in biotechnology and medicine. DNA condensation induced by polyamines or trivalent metal ions <i>in vitro</i> at room temperature has been investigated in detail. Our recent studies have demonstrated Mg<sup>2+</sup>-mediated formation of DNA condensates during the PCR. In this study, we report the unique morphology and fine structure of PCR-generated condensed DNA particles using electron and atomic force microscopy. The principal morphologies of studied DNA condensates are 3D particles of micrometer dimensions, oval microdisks of nanometer thickness, filaments, and compact nano-sized particles. SEM examinations have revealed a new structural type of spherical and elliptical 3D microparticles formed by numerous definitely oriented microdisks and their segments. AFM revealed a granular structure of the microdisk surface and the smallest nano-sized disks and thinnest nanofibrils – that appear to be the primary products of DNA condensation during the PCR. We suggest that the formation of DNA nanofibrils and nanodisks in PCR occurs due to Mg<sup>2+</sup> – mediated intermolecular (lateral) and intramolecular condensation of ssDNA. Aggregation of elementary nanodisks in the course of thermal PCR cycles, occurring both by magnesium cations and via complementary interactions, give a rise to large nano-sized aggregates and more complex microparticles.
DOI: 10.6084/m9.figshare.856699.v2
title: 7B Neuron use_traubexac = 0

description: traying to reproduce fig 7B from "A single column thalamocortical network model" (Traub et al 2005) on Neuron version of Traub model. Files: fig.png - rasterplot, out.dat - data for rasterplot, test7.png voltage trace from suppyrRS, suppyrFRB, tuftIB and spinystellate, GROUCHO... suppyrRS, suppyrFRB, tuftIB, spinystellate, tuftRS - voltage (! only voltage) data from soma of cell1 from the population diff_init.txt, difference in init.hoc file between this case and 7A Neuron use_traubexac = 0, the rest of the files is like in 7A case constant time step use_traubexac = 0 awake = 0 tstop = 1600 ms dt was 0.025
DOI: 10.6084/m9.figshare.856684.v1
title: The structural peculiarities of condensed DNA micro- and nanoparticles formed in PCR

description: Studies of DNA condensation have opened new perspectives in biotechnology and medicine. DNA condensation induced by polyamines or trivalent metal ions <i>in vitro</i> at room temperature has been investigated in detail. Our recent studies have demonstrated Mg<sup>2+</sup>-mediated formation of DNA condensates during the PCR. In this study, we report the unique morphology and fine structure of PCR-generated condensed DNA particles using electron and atomic force microscopy. The principal morphologies of studied DNA condensates are 3D particles of micrometer dimensions, oval microdisks of nanometer thickness, filaments, and compact nano-sized particles. SEM examinations have revealed a new structural type of spherical and elliptical 3D microparticles formed by numerous definitely oriented microdisks and their segments. AFM revealed a granular structure of the microdisk surface and the smallest nano-sized disks and thinnest nanofibrils – that appear to be the primary products of DNA condensation during the PCR. We suggest that the formation of DNA nanofibrils and nanodisks in PCR occurs due to Mg<sup>2+</sup> – mediated intermolecular (lateral) and intramolecular condensation of ssDNA. Aggregation of elementary nanodisks in the course of thermal PCR cycles, occurring both by magnesium cations and via complementary interactions, give a rise to large nano-sized aggregates and more complex microparticles.
DOI: 10.6084/m9.figshare.856699.v1
title: 7B Neuron use_traubexac = 0

description: traying to reproduce fig 7B from "A single column thalamocortical network model" (Traub et al 2005) on Neuron version of Traub model. Files: figout.dat - rasterplot, out.dat - data for rasterplot, test7.png voltage trace from suppyrRS, suppyrFRB, tuftIB and spinystellate, GROUCHO... suppyrRS, suppyrFRB, tuftIB, spinystellate, tuftRS - voltage (! only voltage) data from soma of cell1 from the population diff_init.txt, difference in init.hoc file between this case and 7A Neuron use_traubexac = 0, the rest of the files is like in 7A case constant time step use_traubexac = 0 tstop = 1600 ms dt was 0.025
DOI: 10.6084/m9.figshare.856651
title: Gaussian Job Archive for C37H46ClMnN2O3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.856651.v1
title: Gaussian Job Archive for C37H46ClMnN2O3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.856650
title: Gaussian Job Archive for C37H46ClMnN2O3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.856650.v1
title: Gaussian Job Archive for C37H46ClMnN2O3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.856649
title: Gaussian Job Archive for C37H46ClMnN2O3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.856645
title: Preliminary test data for the Guild room coffee project

description: Data for the preliminary test of the Guild room coffee project (http://onsnetwork.org/koalha/), which tries to find out whether the mass of one measure of coffee depends on the measure, measurer and coffee itself. Two labels of coffee were measured with two different measures to find out, which variables are worth measuring on a larger scale. Each combination of variables was measured 10 times, for a total of 40 measurements. The plastic measure was a standard one, while the metallic measure was slightly bigger.
DOI: 10.6084/m9.figshare.856649.v1
title: Gaussian Job Archive for C37H46ClMnN2O3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.855629
title: BSalhia_et_al_Methylation_Data_Archive

description: The brain is a common site of metastatic disease in patients with breast cancer, which has few therapeutic options and dismal outcomes. The purpose of our study was to identify common and rare events that underlie breast cancer brain metastasis. We performed deep genomic profiling, which integrated gene copy number, gene expression and DNA methylation datasets on a collection of breast brain metastases. This dataset includes array-based DNA methylation data on 32 breast brain metastasis samples, 12 non-neoplastic breast and 15 non-neoplastic brain samples using the Infinium HumanMethylation27 BeadArray (Illumina, San Diego, CA) Gene expression (GSE52604) and aCGH (Figshare) microarray data are also available.
DOI: 10.6084/m9.figshare.855630
title: Tweets from AAA 2011

description: Dataset to accompany chapter in ' Data Mining Applications with R',: Elsevier, November 2013, Editors: Yanchang Zhao, Yonghua Cen, ISBN: 978-0124115118. Code for analysing these data is archived at: https://github.com/benmarwick/AAA2011-Tweets
DOI: 10.6084/m9.figshare.856645.v1
title: Preliminary test data for the Guild room coffee project

description: Data for the preliminary test of the Guild room coffee project (http://onsnetwork.org/koalha/), which tries to find out whether the mass of one measure of coffee depends on the measure, measurer and coffee itself. Two labels of coffee were measured with two different measures to find out, which variables are worth measuring on a larger scale. Each combination of variables was measured 10 times, for a total of 40 measurements. The plastic measure was a standard one, while the metallic measure was slightly bigger.
DOI: 10.6084/m9.figshare.855627
title: B Salhia et al Methylation Metadata Spreadsheet for Breast Brain Metastasis

description: DNA Methylation Analysis using the Infinium HumanMethylation27 BeadArray (Illumina) for 32 Breast Brain Metastasis samples, 15 Non-Neoplastic Brain samples, and 12 Non-Neoplastic Breast samples
DOI: 10.6084/m9.figshare.855630.v1
title: Tweets from AAA 2011

description: Dataset to accompany chapter in ' Data Mining Applications with R',: Elsevier, November 2013, Editors: Yanchang Zhao, Yonghua Cen, ISBN: 978-0124115118. Code for analysing these data is archived at: https://github.com/benmarwick/AAA2011-Tweets
DOI: 10.6084/m9.figshare.855624
title: Fermi LAT Diffuse galactic Background Model in HEALPix

description: <strong>gll_iem_v02_P6_V11_DIFFUSE.fit </strong>converted with Aladin to HEALPix