cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7830527
title: Supplementary Material for: Distinctive and Pervasive Alterations of Functional Brain Networks in Cerebral Small Vessel Disease with and without Cognitive Impairment

description: <b><i>Objective:</i></b> To explore the within- and between-network patterns of the default mode network (DMN), the frontoparietal control network (FPCN), and the dorsal attention network (DAN) in cerebral small vessel disease (CSVD) with and without cognitive impairment (CI). <b><i>Methods:</i></b> Twenty CSVD with CI subjects, 21 CSVD without CI subjects, and 25 healthy elderly controls were recruited. The within- and between-network patterns of the networks were identified based on resting-state functional magnetic resonance imaging data. <b><i>Results:</i></b> Compared with the control group, both the CSVD with CI group and the CSVD without CI group displayed decreased within-network function of the DMN and lower negative connectivity between the DMN and other networks (i.e., DMN and DAN, DMN and FPCN), whereas the CSVD with CI group additionally showed within- and between-network alterations of the FPCN (i.e., increased within-network function of the FPCN and lower negative connectivity between the FPCN and the DMN). Furthermore, these alterations of the FPCN were correlated with the cognitive function of CSVD subjects. Interestingly, the between-network connectivity of the FPCN and the DMN was negatively correlated with deep white matter hyperintensities (DWMH) volume in CSVD subjects. <b><i>Conclusion:</i></b> These findings suggest that cognitive alterations of CSVD subjects may be mainly regulated by the FPCN that correlates with DWMH burden, and shed light on the investigation of surrogate markers of CSVD.
DOI: 10.6084/m9.figshare.7830518
title: Supplementary Material for: Feasibility of Remote Assessment of Human Prion Diseases for Research and Surveillance

description: <b><i>Background:</i></b> Prion disease research and surveillance can be challenging due to the disease’s difficulty to diagnose, rapid progression, and geographic dispersion. Improving accessibility through teleneurology could improve the ability to conduct these activities. <b><i>Objectives:</i></b> The aim of this study was to determine the feasibility of conducting teleneurology assessments for research and surveillance of prion diseases. <b><i>Method:</i></b> Participants were offered in-person visit, medical record review, or teleneurology assessment. Standardized histories and assessments evaluating cognition, functional ability, and neuropsychiatric symptoms were collected. Data regarding participants’ satisfaction with teleneurology were collected. <b><i>Results:</i></b> From April 2017 to July 2018, the study received 114 referrals. 45 and 5 participants consented for the teleneurology and medical record review arms of the study, respectively. 29 subjects participated in at least one teleneurology visit. Participants expressed satisfaction with teleneurology and found it easy to participate. Some aspects of the examination were hindered or interrupted due to technological reasons. <b><i>Conclusions:</i></b> We demonstrate the feasibility and preference of teleneurology as a modality in which subjects with prion disease can partake in clinical research. Technological aspects sometimes interfered with research assessments.
DOI: 10.6084/m9.figshare.7830512
title: Remotely piloted aircraft photographs of Jabal Hafit anticline (United Arab Emirates) for photo-based 3-D (SfM-MVS) reconstruction

description: This dataset contains 5781 images acquired by remotely piloted aircraft (DJI Phantom 4). These images map a transect across the Jabal Hafit anticline in the United Arab Emirates. Mapping area is c. 4000 m x 800 m. Acquisition date: 8 - 16 November 2017.<br>Latitude: 24.090235Longitude: 55.762924<br>Images were collected to carry out photo-based 3-D reconstruction (structure-from-motion and multi-view stereo), for geological mapping. Images have been separated into four geographical areas from east to west in eight compressed files:<br>1a.zip = 810 jpg 1b.zip = 810 jpg2a.zip = 583 jpg2b.zip = 583 jpg3a.zip = 890 jpg3b.zip = 889 jpg4a.zip = 608 jpg4b.zip = 608 jpg<br>Table S1.xlsx lists EXIF data for each image.Table S2.xlsx provides ground control point data. Note: GNSS locations have large errors.<br>When using this data set please use the following citation:<br><br>Hansman, R.J., and Ring, U., 2019, Workflow: From photo-based 3-D reconstruction of remotely piloted aircraft images to a 3-D geological model: Geosphere, v. 15, no. 4, p. 1393–1408, https://doi.org/10.1130/GES02031.1
DOI: 10.17028/rd.lboro.7830500
title: Y11_lesson_materials for Measuring Conceptual Understanding

description: Full lesson plans and workbooks. These were used in study three in the report available at: http://www.nuffieldfoundation.org/sites/default/files/files/MCU_FINALREPORT.pdf
DOI: 10.6084/m9.figshare.7830512.v1
title: Remotely piloted aircraft photographs of Jabal Hafit anticline (United Arab Emirates) for photo-based 3-D (SfM-MVS) reconstruction

description: This dataset contains 5781 images acquired by remotely piloted aircraft (DJI Phantom 4). These images map a transect across the Jabal Hafit anticline in the United Arab Emirates. Mapping area is c. 4000 m x 800 m. Acquisition date: 8 - 16 November 2017.<br>Latitude: 24.090235Longitude: 55.762924<br>Images were collected to carry out photo-based 3-D reconstruction (structure-from-motion and multi-view stereo), for geological mapping. Images have been separated into four geographical areas from east to west in eight compressed files:<br>1a.zip = 810 jpg 1b.zip = 810 jpg2a.zip = 583 jpg2b.zip = 583 jpg3a.zip = 890 jpg3b.zip = 889 jpg4a.zip = 608 jpg4b.zip = 608 jpg<br>Table S1.xlsx lists EXIF data for each image.Table S2.xlsx provides ground control point data. Note: GNSS locations have large errors.<br>When using this data set please use the following citation:<br><br>Hansman, R.J., and Ring, U., 2019, Workflow: From photo-based 3-D reconstruction of remotely piloted aircraft images to a 3-D geological model: Geosphere, v. 15, no. 4, p. 1393–1408, https://doi.org/10.1130/GES02031.1
DOI: 10.17028/rd.lboro.7830500.v1
title: Y11_lesson_materials for Measuring Conceptual Understanding

description: Full lesson plans and workbooks. These were used in study three in the report available at: http://www.nuffieldfoundation.org/sites/default/files/files/MCU_FINALREPORT.pdf
DOI: 10.6084/m9.figshare.7830485
title: Supplementary Data 2 - LFY_Protein_Sequences.fasta

description: The LEAFY protein sequences collected from public databases.
DOI: 10.6084/m9.figshare.7830479
title: Supplementary Data 3 - LFY_Sequence_Alignment.fasta

description: The final protein sequence alignment used to reconstruct the LEAFY family phylogeny.
DOI: 10.6084/m9.figshare.7830467
title: Specimen information from Mechanical significance of morphological variation in diprotodont incisors

description: Contains institution and accession numbers, voxel dimensions and and CT repository number for each specimen
DOI: 10.6084/m9.figshare.7830485.v1
title: LFY_Protein_Sequences.fasta

description: The LEAFY protein sequences collected from public databases.
DOI: 10.6084/m9.figshare.7830464
title: Effects of ventilation frequency and exchange surface areas in metabolic scaling

description: In six closely related species of carp maintained under the same experimental conditions, the scaling exponents of RMR and GSA were analysed.
DOI: 10.6084/m9.figshare.7830479.v1
title: LFY_Sequence_Alignment.fasta

description: The final protein sequence alignment used to reconstruct the LEAFY family phylogeny.
DOI: 10.6084/m9.figshare.7830485.v3
title: Supplementary Data 2 - LFY_Protein_Sequences.fasta

description: The LEAFY protein sequences collected from public databases.
DOI: 10.6084/m9.figshare.7830464.v1
title: Effects of ventilation frequency and exchange surface areas in metabolic scaling

description: In six closely related species of carp maintained under the same experimental conditions, the scaling exponents of RMR and GSA were analysed.
DOI: 10.6084/m9.figshare.7830467.v1
title: Specimen information from Mechanical significance of morphological variation in diprotodont incisors

description: Contains institution and accession numbers, voxel dimensions and and CT repository number for each specimen
DOI: 10.6084/m9.figshare.7830485.v2
title: LFY_Protein_Sequences.fasta

description: The LEAFY protein sequences collected from public databases.
DOI: 10.6084/m9.figshare.7830479.v3
title: Supplementary Data 3 - LFY_Sequence_Alignment.fasta

description: The final protein sequence alignment used to reconstruct the LEAFY family phylogeny.
DOI: 10.6084/m9.figshare.7830479.v2
title: LFY_Sequence_Alignment.fasta

description: The final protein sequence alignment used to reconstruct the LEAFY family phylogeny.
DOI: 10.6084/m9.figshare.7830434
title: Dataset from Shifts in cranial integration associated with ecological specialization in pinnipeds (Mammalia, Carnivora)

description: Landmark data for all specimens included in this study.
DOI: 10.6084/m9.figshare.7830434.v1
title: Dataset from Shifts in cranial integration associated with ecological specialization in pinnipeds (Mammalia, Carnivora)

description: Landmark data for all specimens included in this study.
DOI: 10.6084/m9.figshare.7830416
title: Supplementary Data 5 - LFY_Phylogeny_BI_MrBayes.tre

description: Tree file for the Bayesian Inference LEAFY family phylogeny generated by MrBayes. The cladogram tree file could be visualised using FigTree.
DOI: 10.6084/m9.figshare.7830392
title: Supplementary Data 4 - LFY_Phylogeny_ML_IQTree.tre

description: Tree file for the maximum-likelihood LEAFY family phylogeny generated by IQTREE. The cladogram tree file could be visualised using FigTree.
DOI: 10.6084/m9.figshare.7830365
title: Supplementary Figures 1-16.

description: The supplementary figures.
DOI: 10.6084/m9.figshare.7830416.v1
title: LFY_Phylogeny_BI_MrBayes.tre

description: Tree file for the Bayesian Inference LEAFY family phylogeny generated by MrBayes. The tree file could be visualised using FigureTree.
DOI: 10.6084/m9.figshare.7830350
title: Supplementary Data 6

description: Lists of synonymous substitution rates for associated rice and grape syntelog pairs.
DOI: 10.6084/m9.figshare.7830377
title: Supplementary Data 1 - LFY_Gene_List.xlsx

description: The gene accessions of LFY from Phytozome and 1KP databases were listed in this spreadsheet.
DOI: 10.6084/m9.figshare.7830416.v3
title: Supplementary Data 5 - LFY_Phylogeny_BI_MrBayes.tre

description: Tree file for the Bayesian Inference LEAFY family phylogeny generated by MrBayes. The cladogram tree file could be visualised using FigTree.
DOI: 10.6084/m9.figshare.7830365.v2
title: Supplementary Figures 1-16.

description: The supplementary figures.
DOI: 10.6084/m9.figshare.7830377.v1
title: LFY_Gene_List.xlsx

description: The gene accessions of LFY from Phytozome and 1KP databases were listed in this spreadsheet.
DOI: 10.6084/m9.figshare.7830392.v1
title: LFY_Phylogeny_ML_IQTree.tre

description: Tree file for the maximum-likelihood LEAFY family phylogeny generated by IQTREE. The tree file could be visualised using FigureTree.
DOI: 10.6084/m9.figshare.7830416.v2
title: LFY_Phylogeny_BI_MrBayes.tre

description: Tree file for the Bayesian Inference LEAFY family phylogeny generated by MrBayes. The cladogram tree file could be visualised using FigTree.
DOI: 10.6084/m9.figshare.7830350.v2
title: Supplementary Data 6

description: Lists of synonymous substitution rates for associated rice and grape syntelog pairs.
DOI: 10.6084/m9.figshare.7830377.v3
title: Supplementary Data 1 - LFY_Gene_List.xlsx

description: The gene accessions of LFY from Phytozome and 1KP databases were listed in this spreadsheet.
DOI: 10.6084/m9.figshare.7830392.v2
title: LFY_Phylogeny_ML_IQTree.tre

description: Tree file for the maximum-likelihood LEAFY family phylogeny generated by IQTREE. The cladogram tree file could be visualised using FigTree.
DOI: 10.6084/m9.figshare.7830392.v3
title: Supplementary Data 4 - LFY_Phylogeny_ML_IQTree.tre

description: Tree file for the maximum-likelihood LEAFY family phylogeny generated by IQTREE. The cladogram tree file could be visualised using FigTree.
DOI: 10.6084/m9.figshare.7830344
title: Stabilization, Extrication.pdf

description: LAST is process in SAR and Transport. in this presentation , my object is training prehospital. <br>
DOI: 10.6084/m9.figshare.7830377.v2
title: LFY_Gene_List.xlsx

description: The gene accessions of LFY from Phytozome and 1KP databases were listed in this spreadsheet.
DOI: 10.6084/m9.figshare.7830233
title: Frequency of sero-prevalence among LMCI and LMI

description: Seroprevalence data<br>
DOI: 10.6084/m9.figshare.7830344.v2
title: Stabilization, Extrication.pdf

description: LAST is process in SAR and Transport. in this presentation , my object is training prehospital. <br>
DOI: 10.6084/m9.figshare.7830215
title: Summary statistics from the multiple runs from Modelling the evolution of viral oncogenesis

description: Most human oncogenic viruses share several characteristics, such as being DNA viruses, having long (co)evolutionary histories with their hosts and causing either latent or chronic infections. They can reach high prevalences while causing relatively low case mortality, which makes them quite fit according to virulence evolution theory. After analysing the life histories of DNA oncoviruses, we use a mathematical modelling approach to investigate how the virus life cycle may generate selective pressures favouring or acting against oncogenesis at the within-host or at the between-host level. In particular, we focus on two oncoprotein activities, namely extending cell life expectancy and increasing cell proliferation rate. These have immediate benefits (increasing viral population size) but can be associated with fitness costs at the epidemiological level (increasing recovery rate or risk of cancer) thus creating evolutionary trade-offs. We interpret the results of our nested model in the light of the biological features and identify future perspectives for modelling oncovirus dynamics and evolution.This article is part of the theme issue ‘Silent cancer agents: multi-disciplinary modelling of human DNA oncoviruses’.
DOI: 10.6084/m9.figshare.7830218
title: R scripts to run the simulations and generate the plots from Modelling the evolution of viral oncogenesis

description: Most human oncogenic viruses share several characteristics, such as being DNA viruses, having long (co)evolutionary histories with their hosts and causing either latent or chronic infections. They can reach high prevalences while causing relatively low case mortality, which makes them quite fit according to virulence evolution theory. After analysing the life histories of DNA oncoviruses, we use a mathematical modelling approach to investigate how the virus life cycle may generate selective pressures favouring or acting against oncogenesis at the within-host or at the between-host level. In particular, we focus on two oncoprotein activities, namely extending cell life expectancy and increasing cell proliferation rate. These have immediate benefits (increasing viral population size) but can be associated with fitness costs at the epidemiological level (increasing recovery rate or risk of cancer) thus creating evolutionary trade-offs. We interpret the results of our nested model in the light of the biological features and identify future perspectives for modelling oncovirus dynamics and evolution.This article is part of the theme issue ‘Silent cancer agents: multi-disciplinary modelling of human DNA oncoviruses’.
DOI: 10.6084/m9.figshare.7830209
title: Supplementary tables S1 to S4 from Origin and evolution of papillomavirus (onco)genes and genomes

description: Table S1: List of PV genomes collected for the study. Table S2: Testing for common ancestry of E6 and E7 on Reduced Data sets 1 . Table S3: Multiple comparison test after Kruskal-Wallis. Table S4: Raw data figure 2.
DOI: 10.6084/m9.figshare.7830215.v1
title: Summary statistics from the multiple runs from Modelling the evolution of viral oncogenesis

description: Most human oncogenic viruses share several characteristics, such as being DNA viruses, having long (co)evolutionary histories with their hosts and causing either latent or chronic infections. They can reach high prevalences while causing relatively low case mortality, which makes them quite fit according to virulence evolution theory. After analysing the life histories of DNA oncoviruses, we use a mathematical modelling approach to investigate how the virus life cycle may generate selective pressures favouring or acting against oncogenesis at the within-host or at the between-host level. In particular, we focus on two oncoprotein activities, namely extending cell life expectancy and increasing cell proliferation rate. These have immediate benefits (increasing viral population size) but can be associated with fitness costs at the epidemiological level (increasing recovery rate or risk of cancer) thus creating evolutionary trade-offs. We interpret the results of our nested model in the light of the biological features and identify future perspectives for modelling oncovirus dynamics and evolution.This article is part of the theme issue ‘Silent cancer agents: multi-disciplinary modelling of human DNA oncoviruses’.
DOI: 10.6084/m9.figshare.7830209.v1
title: Supplementary tables S1 to S4 from Origin and evolution of papillomavirus (onco)genes and genomes

description: Table S1: List of PV genomes collected for the study. Table S2: Testing for common ancestry of E6 and E7 on Reduced Data sets 1 . Table S3: Multiple comparison test after Kruskal-Wallis. Table S4: Raw data figure 2.
DOI: 10.6084/m9.figshare.7830119
title: Summary of the detector performance data from Temporal variation in the vocal behaviour of southern right whales in the Auckland Islands, New Zealand

description: Summary of the comparison between manual and automated detection data. Two measures of detector performance Positive Predictive Value (PPV) and True Positive Rate (TPR) are also calculated.
DOI: 10.6084/m9.figshare.7830122
title: R script for jittering the upcall versus detector figure from Temporal variation in the vocal behaviour of southern right whales in the Auckland Islands, New Zealand

description: R script for a figure to show the number of automatically detected upcalls per recording vs the number of upcalls detected by the analyst. Points required jittering by 0.6 to offset and reveal overlapping points.
DOI: 10.6084/m9.figshare.7830125
title: Summary of the analysis of the southern right whale vocalisation data from Temporal variation in the vocal behaviour of southern right whales in the Auckland Islands, New Zealand

description: Summary of data on the presence of right whale vocalisations for all of DSG recordings. Call rate data are summarised by season, month, day, diel period and hour for all calls and upcalls seperately. Call types are also summarised by season, month, and day.
DOI: 10.6084/m9.figshare.7830116
title: R script for Zero Inflated Model and Likelihood Ratio from Temporal variation in the vocal behaviour of southern right whales in the Auckland Islands, New Zealand

description: R script for the Zero Inflated Model to evaluate whether season and/or diel period were important for explaining differences in right whale call presence and call rate. A log-likelihood ratio test to determine whether a poisson or negative binomial distribution best fitted the count data is also included.
DOI: 10.6084/m9.figshare.7830119.v1
title: Summary of the detector performance data from Temporal variation in the vocal behaviour of southern right whales in the Auckland Islands, New Zealand

description: Summary of the comparison between manual and automated detection data. Two measures of detector performance Positive Predictive Value (PPV) and True Positive Rate (TPR) are also calculated.
DOI: 10.6084/m9.figshare.7830122.v1
title: R script for jittering the upcall versus detector figure from Temporal variation in the vocal behaviour of southern right whales in the Auckland Islands, New Zealand

description: R script for a figure to show the number of automatically detected upcalls per recording vs the number of upcalls detected by the analyst. Points required jittering by 0.6 to offset and reveal overlapping points.
DOI: 10.6084/m9.figshare.7830125.v1
title: Summary of the analysis of the southern right whale vocalisation data from Temporal variation in the vocal behaviour of southern right whales in the Auckland Islands, New Zealand

description: Summary of data on the presence of right whale vocalisations for all of DSG recordings. Call rate data are summarised by season, month, day, diel period and hour for all calls and upcalls seperately. Call types are also summarised by season, month, and day.
DOI: 10.6084/m9.figshare.7830101
title: Code from Multiple exposures, reinfection and risk of progression to active tuberculosis

description: R code for all analysis.
DOI: 10.6084/m9.figshare.7830110
title: S2-Data_and_Analisis-Kuenzinger_et_al from Innate colour preferences of a hawkmoth depend on visual context

description: Original data and analysis
DOI: 10.6084/m9.figshare.7830101.v1
title: Code from Multiple exposures, reinfection and risk of progression to active tuberculosis

description: R code for all analysis.
DOI: 10.6084/m9.figshare.7830110.v1
title: S2-Data_and_Analisis-Kuenzinger_et_al from Innate colour preferences of a hawkmoth depend on visual context

description: Original data and analysis
DOI: 10.6084/m9.figshare.7830098
title: Data from Multiple exposures, reinfection and risk of progression to active tuberculosis

description: Case status and number of exposures for 149 exposed individuals.
DOI: 10.6084/m9.figshare.7830083
title: Microwave assisted extraction co-citation analysis

description: Various clusters and full network of microwave assisted extraction
DOI: 10.6084/m9.figshare.7830098.v1
title: Data from Multiple exposures, reinfection and risk of progression to active tuberculosis

description: Case status and number of exposures for 149 exposed individuals.
DOI: 10.6084/m9.figshare.7830083.v1
title: Microwave assisted extraction co-citation analysis

description: Various clusters and full network of microwave assisted extraction
DOI: 10.6084/m9.figshare.7830068
title: Data & scripts from Should I stay or should I go? Individual movement decisions during group departures in red-fronted lemurs

description: This archive contains the data and the R scripts for the analyses in the paper.
DOI: 10.6084/m9.figshare.7830068.v1
title: Data & scripts from Should I stay or should I go? Individual movement decisions during group departures in red-fronted lemurs

description: This archive contains the data and the R scripts for the analyses in the paper.
DOI: 10.6084/m9.figshare.12881441
title: Captopril Dose-Response Data.xlsx

description: Quantitative and qualitative data assessing the antiviral effects of Captopril, an ACE-1 inhibitor, on HSV-1.
DOI: 10.6084/m9.figshare.12881441.v1
title: Captopril Dose-Response Data.xlsx

description: Quantitative and qualitative data assessing the antiviral effects of Captopril, an ACE-1 inhibitor, on HSV-1.
DOI: 10.6084/m9.figshare.7829816
title: Additional file 2: of Real-time analysis of the diphtheria outbreak in forcibly displaced Myanmar nationals in Bangladesh

description: Incidence data - The unadjusted incidence data extracted from line lists and used for this analysis. (CSV 642 kb)
DOI: 10.6084/m9.figshare.7829816.v1
title: Additional file 2: of Real-time analysis of the diphtheria outbreak in forcibly displaced Myanmar nationals in Bangladesh

description: Incidence data - The unadjusted incidence data extracted from line lists and used for this analysis. (CSV 642 kb)
DOI: 10.6084/m9.figshare.7829807
title: Additional file 1: of Real-time analysis of the diphtheria outbreak in forcibly displaced Myanmar nationals in Bangladesh

description: Population data. (CSV 82 bytes)