cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh2909510.08fu
title: SH2909510.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2909511.08fu
title: SH2909511.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2909512.08fu
title: SH2909512.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2909513.08fu
title: SH2909513.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2909514.08fu
title: SH2909514.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.20131034.v1
title: Additional file 4 of Construction and validation of molecular subtypes of coronary artery disease based on ferroptosis-related genes

description: Additional file 4: Table S1. List of 156 ferroptosis-related genes.
DOI: 10.6084/m9.figshare.19606765.v1
title: Additional file 1 of Development of a career questionnaire for medical undergraduates using Mokken scale analysis

description: Additional file 1: Supplementary Table 1. Preliminary questionnaire (English language version). This is the questionnaire sent to 246 students after the pilot survey, including an explanation section and items.
DOI: 10.6084/m9.figshare.20131423
title: Pancreatic cancer cell exosomes induce lipidomics changes in adipocytes

description: Increasing evidence has demonstrated the important roles of exosomes during pancreatic cancer development. However, the effects of pancreatic cancer exosomes (PC-exos) on adipocytes remain largely unknown. Here, we used mass-spectrometry-based lipidomics to identify lipids that were changed in adipocytes after exposure to PC-exos, and we found that triglyceride (TG) reduction was the most significant, which might be induced by increased lipolysis because the number of large lipid droplets increased while small ones decreased. Additionally, abdominal adipocytes in mice injected with PC-exos had a relatively smaller size. Mechanistically, we found that genes involved in metabolism and inflammation were up-regulated, among which increase of IL-6 was significant, and we then found IL-6 promoted lipolysis. To our knowledge, this is the first study on the lipidomics changes of adipocytes after PC-exos treatment.
DOI: 10.6084/m9.figshare.8073275
title: Additional file 5 of Efficient proximal gradient algorithm for inference of differential gene networks

description: The list of 121 MSigDB C2 gene sets that are significantly enriched in the set of 268 dNet genes in Additional fileÂ 4 identified from the BRCA data. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.20131178
title: Additional file 5 of Safety and efficiency of stem cell therapy for COVID-19: a systematic review and meta-analysis

description: Additional file 5. Characteristics of Involved Studies. Specific information of 17 articles included: country, study design, number of patients, treatment of intervention group and control group.
DOI: 10.6084/m9.figshare.20131489
title: Additional file 5 of miR-2682-3p antagonizes its host lncRNA-MIR137HG by interacting with the same target FUS to regulate the progression of gastric cancer

description: Additional file 5. Supplement datasets file. Datasets about candidated proteins might be the downstream targets which could direct or indirect interacted with FUS by IP following with gel strip related LC-MS/MS.
DOI: 10.6084/m9.figshare.8073284
title: Additional file 6 of Efficient proximal gradient algorithm for inference of differential gene networks

description: The list of the TCGA IDs of 72 KIRC and 72 normal tissue samples. (XLSX 6.55 kb)
DOI: 10.6084/m9.figshare.8073305
title: Additional file 9 of Efficient proximal gradient algorithm for inference of differential gene networks

description: The list of 251 MSigDB C2 gene sets that are significantly enriched in the set of 460 dNetK genes in Additional fileÂ 8 identified from the KIRC data. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.20131181.v1
title: Additional file 6 of Safety and efficiency of stem cell therapy for COVID-19: a systematic review and meta-analysis

description: Additional file 6. All Adverse Events in Involved Studies. All adverse events (AEs), AEs related to treatment and numbers of patients with AEs reported in involved studies between experimental and control groups.
DOI: 10.6084/m9.figshare.8072909.v1
title: Additional file 1: of Association between trimester-specific gestational weight gain and childhood obesity at 5â years of age: results from Shanghai obesity cohort

description: Maternal and childrenâ s characteristics in excluded pairs with missing data and included pairs. BMI, body mass index; FMI, fat mass index; FFMI, fat free mass index; WHtR, waist-height-ratio. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.8073305.v1
title: Additional file 9 of Efficient proximal gradient algorithm for inference of differential gene networks

description: The list of 251 MSigDB C2 gene sets that are significantly enriched in the set of 460 dNetK genes in Additional fileÂ 8 identified from the KIRC data. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.19610181
title: Proteomic analysis reveals key differences between squamous cell carcinomas and adenocarcinomas across multiple tissues

description: To explore the biological insights into squamous cell carcinoma (SCC) derived from different organs, we reported a deep proteomic analysis of 333 SCCs of 17 organs and 69 adenocarcinomas (ACs) of 7 organs. Proteomic comparison between pan-SCCs and pan-ACs identifies distinguishable pivotal pathways, including keratinization, glucose metabolism, and extracellular matrix. Molecules in those pathways play consistent adverse or opposite prognostic roles in ACs and SCCs. A comparison between common and rare SCCs highlights lipid metabolism may reinforce the malignancy of rare SCCs. Proteomic clusters reveal anatomical features, and kinase-transcription factor networks indicate differential SCC initiation, while immune subtyping reveals diverse tumor microenvironments across and within diagnoses and identified potential druggable targets. HPV16 infected anogenital SCCs exhibit immune escape and higher inositol phosphate catabolic process. Furthermore, tumor-specific proteins provide candidates with differentially diagnostic values. This proteomics architecture represents a unique public resource for researchers seeking a better understanding of SCCs.
DOI: 10.6084/m9.figshare.8072873.v1
title: MOESM1 of Characterization of cadmium-responsive MicroRNAs and their target genes in maize (Zea mays) roots

description: Additional file 1: Figure S1. Effect of Cd stress on SOD and POD enzyme activities in B73 and Mo17. The graphs (A) and (B) depicted the average change of superoxide dismutase (SOD) activities and contents of peroxidase (POD) in maize inbred line B73 and Mo17 leaf and roots respectively. The data are presented as the mean number per section Âą SEM. *p&lt;0.05 experimental vs. 0 h; #p&lt;0.05 root vs. leaf. Figure S2. GO annotation of target genes of the candidate miRNAs. The Y -axis is the percentage of targeted genes mapped by the term, and represents the abundance of the GO term. The X -axis is the definition of GO terms.
DOI: 10.6084/m9.figshare.14891592
title: Pesticides and risk assessment in Shanghai fruit and raw eaten vegetables

description: A database of 392 pesticides established by an Ultrahigh performance liquid chromatography-tandem Q/Orbitrap high-resolution mass spectrometer (UPLC-Q/Orbitrap-HRMS) was used to screen multiple residues of pesticides in fruit and raw eaten vegetables from planting farms in Shanghai. Risk assessment was conducted with the screened results of the determined pesticides as to evaluate food safety. In 95% of the samples, one or more pesticides had a content below the maximum residue limits (MRLs) as set in the national Chinese standard. The co-occurrence of multi-residues of pesticides was more severe in peach and muskmelon, when compared with other food. All hazard index values of different groups were in the range of 0.19% to 12.3%, demonstrating that chronic dietary risk of studied fruits and raw eaten vegetables is low and the studied food samples were safe for human consumption in terms of these detected pesticides.
DOI: 10.6084/m9.figshare.20131427
title: Additional file 1 of Exploring the potential mechanism of emetine against coronavirus disease 2019 combined with lung adenocarcinoma: bioinformatics and molecular simulation analyses

description: Additional file 1. Genes related to COVID-19.
DOI: 10.6084/m9.figshare.8072891.v1
title: MOESM1 of Identification of ESM1 overexpressed in head and neck squamous cell carcinoma

description: Additional file 1. ESM1 expression of 21 paired samples of HNSCC with clinical and pathological features.
DOI: 10.6084/m9.figshare.7027289
title: Additional file 1: of Construction of a high-density genetic map and mapping of QTLs for soybean (Glycine max) agronomic and seed quality traits by specific length amplified fragment sequencing

description: Genotype list of 149 RILs. (XLSX 2691 kb)
DOI: 10.6084/m9.figshare.7027289.v1
title: Additional file 1: of Construction of a high-density genetic map and mapping of QTLs for soybean (Glycine max) agronomic and seed quality traits by specific length amplified fragment sequencing

description: Genotype list of 149 RILs. (XLSX 2691 kb)
DOI: 10.6084/m9.figshare.8072909
title: Additional file 1: of Association between trimester-specific gestational weight gain and childhood obesity at 5â years of age: results from Shanghai obesity cohort

description: Maternal and childrenâ s characteristics in excluded pairs with missing data and included pairs. BMI, body mass index; FMI, fat mass index; FFMI, fat free mass index; WHtR, waist-height-ratio. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.20131433.v1
title: Additional file 3 of Exploring the potential mechanism of emetine against coronavirus disease 2019 combined with lung adenocarcinoma: bioinformatics and molecular simulation analyses

description: Additional file 3. Univariate Cox proportional hazards regression analysis of the intersecting genes of COVID-19 and LUAD.
DOI: 10.6084/m9.figshare.20131448.v1
title: Additional file 8 of Exploring the potential mechanism of emetine against coronavirus disease 2019 combined with lung adenocarcinoma: bioinformatics and molecular simulation analyses

description: Additional file 8. The redocking files.
DOI: 10.6084/m9.figshare.20131427.v1
title: Additional file 1 of Exploring the potential mechanism of emetine against coronavirus disease 2019 combined with lung adenocarcinoma: bioinformatics and molecular simulation analyses

description: Additional file 1. Genes related to COVID-19.
DOI: 10.6084/m9.figshare.8072873
title: MOESM1 of Characterization of cadmium-responsive MicroRNAs and their target genes in maize (Zea mays) roots

description: Additional file 1: Figure S1. Effect of Cd stress on SOD and POD enzyme activities in B73 and Mo17. The graphs (A) and (B) depicted the average change of superoxide dismutase (SOD) activities and contents of peroxidase (POD) in maize inbred line B73 and Mo17 leaf and roots respectively. The data are presented as the mean number per section Âą SEM. *p&lt;0.05 experimental vs. 0 h; #p&lt;0.05 root vs. leaf. Figure S2. GO annotation of target genes of the candidate miRNAs. The Y -axis is the percentage of targeted genes mapped by the term, and represents the abundance of the GO term. The X -axis is the definition of GO terms.
DOI: 10.6084/m9.figshare.9121523
title: Additional file 3: of Insights into body size variation in cetaceans from the evolution of body-size-related genes

description: Table S7. Primer sets used to amplify the coding regions of body-size-related genes in this study (XLSX 25 kb)
DOI: 10.6084/m9.figshare.9121523.v1
title: Additional file 3: of Insights into body size variation in cetaceans from the evolution of body-size-related genes

description: Table S7. Primer sets used to amplify the coding regions of body-size-related genes in this study (XLSX 25 kb)
DOI: 10.6084/m9.figshare.9121529
title: Additional file 4: of Insights into body size variation in cetaceans from the evolution of body-size-related genes

description: Alignment sequences of 20 body-size related genes used for this study. These files are Fast format, please use MEGA or Clustal to open them. (ZIP 133 kb)
DOI: 10.6084/m9.figshare.8073062.v1
title: MOESM15 of Comparative analysis of microRNA expression profiles of adult Schistosoma japonicum isolated from water buffalo and yellow cattle

description: Additional file 15: Table S13. Cellular components of targets in schistosomes of five known differentially expressed miRNAs.
DOI: 10.6084/m9.figshare.20131489.v1
title: Additional file 5 of miR-2682-3p antagonizes its host lncRNA-MIR137HG by interacting with the same target FUS to regulate the progression of gastric cancer

description: Additional file 5. Supplement datasets file. Datasets about candidated proteins might be the downstream targets which could direct or indirect interacted with FUS by IP following with gel strip related LC-MS/MS.
DOI: 10.6084/m9.figshare.8073065
title: MOESM16 of Comparative analysis of microRNA expression profiles of adult Schistosoma japonicum isolated from water buffalo and yellow cattle

description: Additional file 16: Table S14. Molecular function of targets in schistosomes of five known differentially expressed miRNAs.
DOI: 10.6084/m9.figshare.9121529.v1
title: Additional file 4: of Insights into body size variation in cetaceans from the evolution of body-size-related genes

description: Alignment sequences of 20 body-size related genes used for this study. These files are Fast format, please use MEGA or Clustal to open them. (ZIP 133 kb)
DOI: 10.6084/m9.figshare.8073038.v1
title: MOESM11 of Comparative analysis of microRNA expression profiles of adult Schistosoma japonicum isolated from water buffalo and yellow cattle

description: Additional file 11: Table S10. Primary analysis of the identified differentially expressed novel miRNAs (water buffalo/yellow cattle).
DOI: 10.6084/m9.figshare.7027304.v1
title: Additional file 2: of Construction of a high-density genetic map and mapping of QTLs for soybean (Glycine max) agronomic and seed quality traits by specific length amplified fragment sequencing

description: SLAF markers on the 20 linkage groups. (XLSX 129 kb)
DOI: 10.6084/m9.figshare.7027316
title: Additional file 3: of Construction of a high-density genetic map and mapping of QTLs for soybean (Glycine max) agronomic and seed quality traits by specific length amplified fragment sequencing

description: Information of SLAF markers on the genetic map. (PARTIAL 4956 kb)
DOI: 10.6084/m9.figshare.7027316.v1
title: Additional file 3: of Construction of a high-density genetic map and mapping of QTLs for soybean (Glycine max) agronomic and seed quality traits by specific length amplified fragment sequencing

description: Information of SLAF markers on the genetic map. (PARTIAL 4956 kb)
DOI: 10.6084/m9.figshare.19607294
title: Additional file 4 of Machine learning to predict metabolic drug interactions related to cytochrome P450 isozymes

description: Additional file 4. The FDA-approved drugs for validation.
DOI: 10.6084/m9.figshare.19607291.v1
title: Additional file 3 of Machine learning to predict metabolic drug interactions related to cytochrome P450 isozymes

description: Additional file 3. Additional datasets for multi-level validation and external validation.
DOI: 10.6084/m9.figshare.8073053.v1
title: MOESM13 of Comparative analysis of microRNA expression profiles of adult Schistosoma japonicum isolated from water buffalo and yellow cattle

description: Additional file 13: Table S11. Profiles of five known differentially expressed miRNAs and their targets.
DOI: 10.6084/m9.figshare.8073107
title: MOESM6 of Comparative analysis of microRNA expression profiles of adult Schistosoma japonicum isolated from water buffalo and yellow cattle

description: Additional file 6: Table S5. Information on the 79 known miRNAs of S. japonicum, determined by sequencing and analysis.
DOI: 10.6084/m9.figshare.8073113
title: Additional file 10: of Comparative proteomic analysis of multi-ovary wheat under heterogeneous cytoplasm suppression

description: Table S5. Protein interaction network analysis by searching the STRING 10.0 according to TAIR homologous proteins. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.19607288.v1
title: Additional file 2 of Machine learning to predict metabolic drug interactions related to cytochrome P450 isozymes

description: Additional file 2. The randomly generated negative datasets in the modeling process.
DOI: 10.6084/m9.figshare.19607440.v1
title: Additional file 1 of MicroRNA profile of circulating CD4+ T cells in aged patients with atherosclerosis obliterans

description: Additional file 1. The supplementary figures and tables.
DOI: 10.6084/m9.figshare.8073116.v1
title: MOESM7 of Comparative analysis of microRNA expression profiles of adult Schistosoma japonicum isolated from water buffalo and yellow cattle

description: Additional file 7: Table S6. Profiles of five differentially expressed known miRNAs of schistosomes derived from yellow cattle and water buffalo.
DOI: 10.6084/m9.figshare.19607443.v1
title: Additional file 2 of MicroRNA profile of circulating CD4+ T cells in aged patients with atherosclerosis obliterans

description: Additional file 2. Raw data sheets of miRNA screening and pathway analysis.
DOI: 10.6084/m9.figshare.8073032
title: MOESM10 of Comparative analysis of microRNA expression profiles of adult Schistosoma japonicum isolated from water buffalo and yellow cattle

description: Additional file 10: Table S9. Profiles of ten differentially expressed novel miRNAs of schistosomes derived from yellow cattle and water buffalo.
DOI: 10.6084/m9.figshare.8073098
title: MOESM4 of Comparative analysis of microRNA expression profiles of adult Schistosoma japonicum isolated from water buffalo and yellow cattle

description: Additional file 4: Table S3. Sequences of the primers used for qRT-PCR of the 11 differentially expressed targets.
DOI: 10.25549/pmc-ouc113137636
title: The gates of light, for violoncello and piano

description: Instrumental score manuscript copy (no cover page), plus (1) copy of the self-published full score, with composer's corrections in red, and (1) copy of the self-published cello part. Loose pages, no cover. Gift of Marta Ptaszyńska to Polish Music Center, 2023 January.
DOI: 10.6084/m9.figshare.8073092.v1
title: MOESM3 of Comparative analysis of microRNA expression profiles of adult Schistosoma japonicum isolated from water buffalo and yellow cattle

description: Additional file 3: Table S2. Sequences of the primers used for qRT-PCR and sja-miR-219-5p mimics or inhibitors used for dual-luciferase reporter assays. Sequences of the primers used for qRT-PCR of the five differentially expressed miRNAs.