cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/t4yjmnngs9
title: Data from: Advanced Surface Passivation for High-Sensitivity Studies of Biomolecular Condensates

description: Biomolecular condensates are cellular compartments that concentrate biomolecules without an encapsulating membrane. In recent years, significant advances have been made in the understanding of condensates through biochemical reconstitution and microscopic detection of these structures. Quantitative visualization and biochemical assays of biomolecular condensates rely on surface passivation to minimize background and artifacts due to condensate adhesion. However, the challenge of undesired interactions between condensates and glass surfaces, which can alter material properties and impair observational accuracy, remains a critical hurdle. Here, we introduce an efficient, generically applicable, and simple passivation method employing self-assembly of the surfactant Pluronic F127 (PF127). The method greatly reduces nonspecific binding across a range of condensates systems for both phase-separated droplets and biomolecules in dilute phase. Additionally, by integrating PF127 passivation with the Biotin-NeutrAvidin system, we achieve controlled multi-point attachment of condensates to surfaces. This not only preserves condensate properties but also facilitates long-time FRAP imaging and high-precision single-molecule analyses. Using this method, we have explored the dynamics of polySIM molecules within polySUMO/polySIM condensates at the single-molecule level. Our observations suggest a potential heterogeneity in the distribution of available polySIM-binding sites within the condensates.
DOI: 10.6084/m9.figshare.19785883.v3
title: Supplementary table 1

description: Table indicating the best hit of each protein corresponding to genes flanking plant-derived genes in MEAM1
DOI: 10.6084/m9.figshare.25633827.v1
title: Preprocessed Emotional Dataset

description: preprocessed emotional dataset
DOI: 10.6084/m9.figshare.29165591.v1
title: Changes in Plant and Soil Microbial Diversity Across Different Forest Succession Stages: A Meta-Analysis

description: This study used meta-analysis to integrate data from 136 Chinese publications (92 Chinese and 44 English papers) to systematically evaluate patterns and driving mechanisms of soil and plant microbial diversity changes during forest succession.
DOI: 10.6084/m9.figshare.4872881.v1
title: Supplementary Material for: Pulmonary Carcinoids and Low-Grade Gastrointestinal Neuroendocrine Tumors Show Common MicroRNA Expression Profiles, Different from Adenocarcinomas and Small Cell Carcinomas

description: <b><i>Background:</i></b> It is still uncertain whether small cell lung carcinomas (SCLCs), pulmonary carcinoids, and the gastrointestinal neuroendocrine tumors (GI-NETs) have a common origin. MicroRNA (miRNA) expression may clarify their genetic relationships and origin. <b><i>Methods:</i></b> First, we compared the miRNA expression signature of formalin-fixed paraffin-embedded (FFPE) samples with frozen samples to verify the applicability of microarray analysis. Second, we compared the comprehensive miRNA expression patterns of pulmonary carcinoids and GI-NETs as well as other types of tumors and normal tissues from each organ using FFPE samples. These data were analyzed by hierarchical clustering and consensus clustering with nonnegative matrix factorization. <b><i>Results:</i></b> We confirmed that FFPE samples retained the miRNA signatures. In the first hierarchical clustering comparing carcinoids/NETs with adenocarcinomas and normal tissues, most of the carcinoids (48/50) formed 1 major cluster with loose subpartitioning into each organ type, while all the adenocarcinomas (9/9) and normal tissues (15/15) formed another major cluster. The nonnegative matrix factorization approach largely matched the classification of the hierarchical clustering. In the additional cluster analysis comparing carcinoids/NETs with SCLCs, most carcinoids/NETs (17/22) formed a major cluster, while SCLCs (9/9) grouped together with pulmonary adenocarcinomas (3/3) and normal tissues (6/6) in another major cluster. Furthermore, a subset of miRNAs was successfully identified that exhibited significant expression in carcinoids/NETs. <b><i>Conclusion:</i></b> Carcinoids/NETs had a characteristic pattern of miRNA expression, suggesting a common origin for pulmonary carcinoids and GI-NETs. The expression profiles of pulmonary carcinoids and SCLCs were quite different, indicating the distinct histogenesis of these neuroendocrine neoplasms.
DOI: 10.17632/675gwk5jp7
title: Bibliography of Aeolian Research

description: Aeolian research is a sub-discipline of the physical sciences that focuses on the activity of the winds, with an emphasis on the winds' ability to interact with and shape the surface of the Earth and other planets. Aeolian research spans a broad array of disciplines and may include the study of windblown sand, associated landforms, deposits, and sedimentary features. It may also include the study of dust, dust storms and the effects of fine particulate matter on climate and air quality. Aeolian research also includes the study of wind erosion and its control by tillage, cover crops, shelterbelts, and other management practices. An extensive Bibliography of Aeolian Research (BAR) was constructed that contains references to every known scientific manuscript published in the field of aeolian research from the earliest known publication in 1646 to the year 2015. Construction of the BAR was a team effort that extended over a period of more than fifteen years and resulted in a collection of 44,399 bibliographic citations. Prior to June of 2020, The Bibliography of Aeolian Research was hosted on a webserver located at the USDA-Agricultural Research Service in Lubbock, Texas. This webserver was shut down and is no longer available to the public. The goal of this publication is to restore public access to this valuable data set.
DOI: 10.17632/rjg7j5wzrj
title: Characteristics of chars from biomass and waste co-pyrolysis 

description: The project's main objective was to extend the developed algorithm's capabilities for the classification and evaluation of the origin of thermally processed solid fuels while reducing the amount of laboratory analysis required. For this purpose, studies were carried out on materials obtained during the pyrolysis of three different types of biomass (alder, straw, furniture waste) and on pollutant materials, i.e., plastics Fourier transform infrared spectroscopy (FT-IR) and X-ray fluorescence spectrometry (XRF). 

The dataset consists of:
* data from elemental analysis of char samples obtained under different temperature conditions (exact pyrolysis conditions are given in the publications cited),
* data from Fourier transform infrared spectroscopy (FT-IR) of char samples obtained under different temperature conditions (exact pyrolysis conditions are given in the publications cited),
* data from X-ray fluorescence spectrometry (XRF) of char samples obtained under different temperature conditions (exact pyrolysis conditions are given in the publications cited),
* yields of solid, liquid and gaseous pyrolysis products.


This research data was carried out at the Institute for Chemical Processing of Coal in Poland and was funded by the Ministry of Science and Higher Education under the Iuventus Plus Program for 2015–2016 (project No. IP2014 041073)
DOI: 10.17632/tykbtsz7c6
title: Sustainable Development_KOFGI

description: This Data includes many variables of sustainable development of countries from 2000-2020.
All variables are collected from public Data sources (Worldbank, KOF index).
This dataset is used for our paper: THE IMPACT OF GLOBALIZATION, RENEWABLE ENERGY, AND LABOR ON SUSTAINABLE DEVELOPMENT: A CROSS-COUNTRY ANALYSIS
DOI: 10.6084/m9.figshare.28882223.v1
title: Supplementary Material for: Atypical hemolytic uremic syndrome/complement-mediated thrombotic microangiopathy triggered by SARS-CoV-2 infection: a case report

description: Atypical hemolytic uremic syndrome (aHUS), commonly considered the prototypical form of complement-mediated thrombotic microangiopathy (CM-TMA), is caused by dysregulated complement activation, often triggered by genetic mutations and external factors. We present a case of aHUS occurring one month after SARS-CoV-2 infection in a patient with a mutation in the complement factor H (CFH), a primary regulator of the alternative complement pathway. 
Case Presentation
A 41-year-old woman with no prior conditions developed acute kidney injury, hemolytic anemia, and thrombocytopenia one month after SARS-CoV-2 infection. Genetic testing identified a pathogenic CFH variant (c.3572C&gt;T), and kidney biopsy confirmed thrombotic microangiopathy. Treatment with plasma exchange, corticosteroids, and C5 inhibitors led to remission of proteinuria and improved renal function within 2 months, avoiding dialysis. Even a second SARS-CoV-2 infection six months after the onset of aHUS and under continuous complement C5 inhibition did not result in further kidney damage.
Conclusions
Our case report is consistent with observations made by several groups that SARS-CoV-2 infection may trigger aHUS in genetically predisposed individuals. Early diagnosis and complement-targeted therapy are crucial to prevent severe outcomes.
DOI: 10.17632/9zbsnht6j9
title: How Social Media Drives Travel Intentions

description: How Social Media Drives Travel Intentions: A Mixed-Methods Approach to Analysing Online Influence Using S-O-R Theory;
1,355 records.
DOI: 10.6084/m9.figshare.5731473.v1
title: Participants' Reported Compulsive Sexual Behavior and its interference in their daily lives

description: This was the first data collected by the researcher. This data set had participants record the actual number of times daily that they remember engaging in sexually destructive behaviors. The participants then rated its interference with their life functioning.<br>- This data set found the values were positively moderately correlated as r=0.68 was the result of the t-test performed on the data sets.- The data in this set was tested using the ANOVA Test and the established statistical significance was p=0.043, which is statistically significant.<br>This indicates to the researcher that there is a correlation between the frequency of sexually destructive behaviors and the frequency with which they occur. The more one participates in sexually destructive behaviors, the more one's daily life becomes impacted in a counterproductive way.
DOI: 10.17632/gtrc2r2gzd
title: Raw Data of the prices of construction materials in the Northern region of Morocco (2005-2020)

description: The dataset presents an exhaustive list of construction materials prices from 2005 to 2020 in the Northern region of Morocco.
DOI: 10.6084/m9.figshare.19852657.v1
title: Disability Data for PLOSONE.qdpx

description: This data centres on self-report and connotation of disability among persons living with disability in the Accra Metropolitan Assembly
DOI: 10.6084/m9.figshare.12470030.v4
title: Retrospective profile of 286 men with penile cancer in Maranhão (2004 - 2014)

description: Databank of the profile of 286 men with penile cancer in Maranhão – Northeast Brazil (2004 - 2014)<br>
DOI: 10.6084/m9.figshare.26891299.v1
title: grassland stability

description: grassland stability
DOI: 10.17632/b2xbcrp337
title: Sampling permit from Department of Fisheries Malaysia

description: Sampling permit from Department of Fisheries Malaysia
DOI: 10.17632/zvrz657mx7
title: Data for: MPS-driven Simulation of 3D Geological Structure

description: This is a dataset sample for 3D geological structure modeling. It contains data of the results and the sections. The output1 contains 52 regional geological visualization simulation results.The output2 and output3 are the simulation results of 584*584*584 and 399*399*399 respectively.The TIdata is the training images for regional geological structure simulation.
DOI: 10.17632/2dmgjjn324
title: Critical Heat Flux Data for Water and FC-72 on Pin-Fin Surfaces

description: This data set is compilation of critical heat flux values for boiling of water or FC-72 on smooth surfaces or surfaces with periodic arrays of pin-fins. The surfaces with pin-fins are characterized by the fin shape, fin array type, fin width, fin height, spacing between fins, coverage, porosity, lateral mean beam length (MBL), total MBL, roughness factor, and surface material. The coverage descriptor describes what fraction of the surfaces is covered with the fin pattern, as opposed to being intentionally left smooth. The lateral MBL is defined as four times the volume of void space between the fins divided by the lateral surface area of the fins. The total MBL is defined similarly, but the total surface area is used instead of the lateral surface area. The roughness factor is the ratio of the total surface area of the surface to the nominal (projected) area of the surface. Data was collected from published experimental papers. When necessary, data was extracted from plots using a plot digitizer tool.
DOI: 10.17632/nv327cwcgt
title: MPO and permeability

description: Here you can find code and data used in the study "A model for melt-preferred orientation and permeabilities in deformed partially molten peridotites" by Boda Liu, Chao Qi, Ross N. Mitchell, Cin-Ty A. Lee, Chuan-Zhou Liu.

The folder "MCMC_code" includes the C++ code for the MCMC implementation. Boost (https://www.boost.org/users/history/version_1_78_0.html) and GSL (https://www.gnu.org/software/gsl/) are required for the current project. Useful installation guides can be found at https://www.boost.org/doc/libs/1_77_0/more/getting_started/windows.html and https://solarianprogrammer.com/2020/01/26/getting-started-gsl-gnu-scientific-library-windows-macos-linux/.
The folder "sample_data" contains microstructure data used by MCMC code. Please don't change anything in this folder.
The folder "MCMC_output" contains output files generated by MCMC code. Please don't change anything in this folder.
The folder "plot_result" contains MATLAB scripts to plot fits to microstructure data.
DOI: 10.17632/t57mvdfz39
title: β-Hydroxybutyrate prevents vascular senescence through hnRNP A1-mediated upregulation of Oct4 in vascular cells

description: β-Hydroxybutyrate prevents vascular cell senescence via inducing cell quiescence. β-Hydroxybutyrate- mediated vascular cell quiescence is dependent on Oct4 expression, which is upregulated by forming hnRNP A1 complex with Oct4 mRNAs. β-Hydroxybutyrate-induced Oct4 expression is negatively correlated with hallmarks of senescence in vivo.
DOI: 10.17632/2fck9mdb2s
title: Molecular Basis of Zinc-Dependent Endocytosis of Human ZIP4 Transceptor

description: Nutrient transporters can be rapidly removed from cell surface via substrate-stimulated endocytosis as a way to control nutrient influx, but the molecular underpinnings have not been well understood. In this work, we focused on zinc-dependent endocytosis of human ZIP4 (hZIP4), a zinc transporter essential for dietary zinc uptake. Structure-guided mutagenesis and internalization assay revealed that hZIP4 per se acts as the exclusive zinc sensor with the transport site being responsible for zinc sensing. In an effort of seeking sorting signal, a scan of the longest cytosolic loop (L2) led to identification of a conserved LQL motif essential for endocytosis. Partial proteolysis of purified hZIP4 demonstrated a structural coupling between the transport site and the L2 upon zinc binding, which supports a working model of how zinc ions at physiological concentration trigger a conformation-dependent endocytosis of the zinc transporter. This work provides a new paradigm on post-translational regulation of nutrient transporters.
DOI: 10.17632/42pphfbcdk
title: Motion Artifact Contaminated Multichannel EEG Dataset

description: A volunteer participant's ambulatory EEG signal has been recorded with 14-channel EMOTIV EPOCH EEG Headset while the person was free to move and perform different day to day activities. Total activities were recorded: 1) eye blink, 2) eye brow movement, 3) eye movement, 4) head shaking, 5) head nodding, 6) leg shaking, 7) listening music, 8) relaxed eyes closed, 9) relaxed eyes open, 10) stand up and sit down, 11) talking and 12) walking. Three motion sensors were built-in the device : 1) 3-axis accelerometer, 2) 3-axis gyroscope and 3) 3-axis magnetometer. The data were recorded in Biomedical Instrumentation and Signal Processing Labpratory (BISPL) at Independent University, Bangladesh.
DOI: 10.17632/4m2x4zngny
title: SpotGenTrack Popularity Dataset

description: A database for Music Popularity Prediction, Genre Classification, Automatic music tagging, music similarity and many other interdisciplinary applications within the Music Information Retrieval (MIR) field. The data was collected from Spotify and Genius throughout their respectives API's.
DOI: 10.17632/n9cdhr2fb3
title: Appendix A

description: Biochar yield data produced by co-pyrolysis of biomass and plastics. The data include biomass industrial analysis, elemental analysis, elemental analysis of plastics, pyrolysis temperature, pyrolysis ratio, residence time, and plastic ratio. A total of 133 groups.
DOI: 10.6084/m9.figshare.6328292.v2
title: Standard setting for mastoidectomy survey results

description: The file "Standard Setting Raw Data.csv" contains the results of a survey of attending otologic surgeons. The associated file "surveytext.pdf" contains the text of the survey, which was delivered online. The file "metric_names.csv" has a mapping from the abbreviations used in the column names in the raw data to the text used in the survey.<br><br>The column names in the raw data are encoded in the form `*metricname*_(u,s,c)` where "`_u`" refers to the question for the metric "without supervision" (u means "unsupervised"), "`_s`" refers to "with supervision" and "`_c`" refers to the free comment field. The meaning of the other fields should be clear from the survey text.
DOI: 10.17632/7sm9wznp6d
title: Training Datasets: A High-Throughput Semi-Automated Bone Segmentation Workflow for Murine Hindpaw Micro-CT Datasets

description: The provided datasets in "Training Datasets" were used for training in an associated work, "A High-Throughput Semi-Automated Bone Segmentation Workflow for Murine Hindpaw Micro-CT Datasets", where we described a strategy using Amira software (ThermoFisher Scientific) to segment each individual bone in mouse hindpaws for downstream analysis. The training datasets represent 6 in vivo micro-CT image stacks (.dcm) of both hindpaws from 5-month-old male and female C57BL/6 mice, and depict the distribution of accuracy for the automated segmentation workflow before user intervention. In the associated study, a total of 42 in vivo datasets were analyzed (84 hindpaws) and demonstrated an automated segmentation accuracy of 79.2% on average (bones segmented correctly / total bones) with well-described correction processes for the errors. Analysis of ex vivo datasets improved the segmentation accuracy to 91.1% on average (n=6 hindpaws). The Supplementary Videos in the associated work provide 5 training videos (<2 hours total) to teach the segmentation process. After watching the training videos and practicing the segmentation process on the training datasets, new users to the Amira software exhibited accurate and high-throughput performance in the segmentation workflow. 

An additional dataset from a 2-month-old female C57BL/6 mouse is provided as "Example for 3D Visualization". The dataset is processed with a median filter in 3D, colormap limited to >2,500 Hounsfield units, and converted to 8-bit (.dcm file type). The labels represent the segmented version of the data, where the colormap ranges from 0 - 66 and each value represents a specific bone (.dcm file type). These datasets may be utilized in the associated published article for 3D visualization or available for download by readers. 

All data provided was acquired using a VivaCT 40 (Scanco Medical) using the following imaging parameters: 55kV, 145μA, 300ms integration time, 2048 x 2048 pixels, 1000 projections over 180°, resolution 17.5μm isotropic voxels. Each scan was completed in 30-45 minutes. All animal experiments were approved by the University Committee for Animal Resources at the University of Rochester.
DOI: 10.17632/fcmmh982jb
title: Dataset of small compounds detected in Malayan deer (Cervus timorensis) antler velvet (DAV) water and ethanolic extract analysed via LC-MS/MS-QTOF.

description: This is the dataset profile of nontargeted small molecules detected in deer antler velvet (DAV) extracts derived from the antlers of local male Malayan deer (Cervus timorensis), analyzed using Liquid Chromatography–Mass Spectrometry (LC-MS). The antlers were collected from local company; D’Paradise Deer Valley and Exotic Farm Sdn. Bhd. Three types of extracts were prepared from the powdered DAV samples: water extract (WE), 70% ethanol extract (70% EE), and absolute ethanol extract (EE). These extracts were analyzed using Liquid Chromatography–Tandem Mass Spectrometry with Quadrupole Time-of-Flight (LC-MS/MS-QTOF), operated in both positive and negative ion modes, to identify the nontargeted compounds. The dataset includes the compounds' name, average mass, m/z values, base peaks, retention times, and many other METLIN database search hit identities.
DOI: 10.17632/zpv48v859w
title: Herramienta para evaluación de la audición con audiometría tonal

description: Herramienta para la interpretación de una audiometría tonal en formato xlsx (excel). Está formada por dos páginas, en la primera se introducen los datos del sujeto y audiométricos (frecuencia/intensidad). En la página resultados encontramos la interpretación audiométrica y el grado de pérdida, así como una previsión del grado de discapacidad que corresponde (España).