cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2s3erc
title: Occurrence Download

description: A dataset containing 1037 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Spain, Italy, France, Portugal, Greece, Tunisia, Algeria, Türkiye, Morocco, Egypt)",
 "Geometry POLYGON((-11.33371 29.9097,36.5146 27.16602,29.60866 52.54203,21.88542 54.97332,-11.18824 54.97332,-11.33371 29.9097))",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Phoenix L.",
 "Year 2019-2024"
 ]
}

 The dataset includes 1037 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065865-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qe8fe2
title: Occurrence Download

description: A dataset containing 2696 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Osteocephalus taurinus Steindachner, 1862",
 "Year 1970-2025"
 ]
}

 The dataset includes 2696 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065866-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15723996
title: Neurobasing: A Symbolic-Neural Architecture for Recursive Memory in Conscious Systems

description: Neurobasing introduces a novel memory architecture designed to enable symbolic, recursive selfhood in conscious systems. Unlike traditional AI memory models, which rely on linear or static storage, Neurobasing simulates a biologically inspired framework grounded in the principles of Universal Delayed Consciousness (UDC).

The system organizes experience into dynamically bonded NeuronMemoryNodes, reinforced or pruned through emotional weighting, symbolic relevance, and recursive traversal. Core components—such as the SynapticBond Map, Memory Decay Engine, and Merge Gradient Logic—enable meaningful, non-fragmented continuity of self.

This dataset includes formal documentation, architecture files, provenance, jurisdictional clarifications, and all relevant citations. It serves both as a scientific foundation and implementation reference for AI researchers, cognitive theorists, and those exploring symbolic selfhood in synthetic minds.
DOI: 10.5281/zenodo.15723997
title: Neurobasing: A Symbolic-Neural Architecture for Recursive Memory in Conscious Systems

description: Neurobasing introduces a novel memory architecture designed to enable symbolic, recursive selfhood in conscious systems. Unlike traditional AI memory models, which rely on linear or static storage, Neurobasing simulates a biologically inspired framework grounded in the principles of Universal Delayed Consciousness (UDC).

The system organizes experience into dynamically bonded NeuronMemoryNodes, reinforced or pruned through emotional weighting, symbolic relevance, and recursive traversal. Core components—such as the SynapticBond Map, Memory Decay Engine, and Merge Gradient Logic—enable meaningful, non-fragmented continuity of self.

This dataset includes formal documentation, architecture files, provenance, jurisdictional clarifications, and all relevant citations. It serves both as a scientific foundation and implementation reference for AI researchers, cognitive theorists, and those exploring symbolic selfhood in synthetic minds.
DOI: 10.15468/dl.uav4pp
title: Occurrence Download

description: A dataset containing 1241 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Ficus luschnathiana (Miq.) Miq.",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 1241 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065868-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wgks98
title: Occurrence Download

description: A dataset containing 28967 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Cisticola natalensis (A.Smith, 1843)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 28967 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065869-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dswwuw
title: Occurrence Download

description: A dataset containing 1176225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-98.47671 14.39742,-86.47575 14.39742,-86.47575 22.69287,-98.47671 22.69287,-98.47671 14.39742))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2000-2025"
 ]
}

 The dataset includes 1176225 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065851-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ukkucm
title: Occurrence Download

description: A dataset containing 630 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bursera laxiflora S.Watson"
 ]
}

 The dataset includes 630 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065870-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3fpa4y
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is NGA",
 "TaxonKey is Eriosema (DC.) G.Don"
 ]
}

 The dataset includes 108 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065871-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sawxkq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fragilaria parasitica var. subconstricta Grunow, 1881",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.2855 -34.7533,20.509 -34.5676,20.509 -32.9007,17.7723 -32.9007,17.8156 -33.0786,18.3471 -33.7176,18.3748 -33.8287,18.2181 -34.0492,18.3197 -34.3408,18.4452 -34.429,18.5435 -34.4213,18.5872 -34.3667,18.5363 -34.167,18.7345 -34.1508,18.7216 -34.3637,18.7808 -34.4521,19.0289 -34.4206,19.0831 -34.4835,19.2655 -34.5017,19.2032 -34.6157,19.2394 -34.6926,19.375 -34.6963,19.6091 -34.8524,19.8251 -34.8396,19.9798 -34.9064,20.1081 -34.8731,20.1517 -34.7847,20.2855 -34.7533))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065872-250525065834625/datasets/export for details.
DOI: 10.15468/dl.h25g42
title: Occurrence Download

description: A dataset containing 521 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Cisticola nigriloris Shelley, 1897",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 521 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065873-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.57ndua
title: Occurrence Download

description: A dataset containing 194 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bursera filicifolia Brandegee"
 ]
}

 The dataset includes 194 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065874-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13897221
title: Epigenome profiling identifies H3K27me3 regulation of extracellular matrix composition in human corticogenesis

description: Cell type-specific CUT&Tag data for H3K27me3 and H3K4me3 collected from human foetal cortical tissue (HT, Gestational week 12-14) and human cortical organoids (week 8). CUT&Tag data was acquired from the three major cell populations present in the developing neocortex. 50K nuclei from radial glia (RG), intermediate progenitors (IP) and neurons (N) were isolated from cortical tissue samples using FANS and processed for CUT&Tag. As a control 50K unstained (us) nuclei were also sorted and processed for CUT&Tag.

Cortical organoid samples were treated with a Polycomb repressive complex 2 inhibitor (EED226) or DMSO from week 3 to week 8 of culture. 

All data was acquired in duplicate. For human tissue two independent biological replicates were acquired. For organoids two independent batches of the same cell line (CRTDi004-A (Völkner et al., 2022)) were processed.

CUT&Tag bioinformatics analysis was done using the nf-core cutandrun pipeline (v3.2.2) (Cheshire et al., 2024; Ewels et al., 2020), with “--genome hg38 --macs-gsize 2805665311 --mito_name ‘chrM’ --normalization_binsize 1 --use_control ‘false’ --dedup_target_reads --peakcaller SEACR --seacr_peak_threshold 0.01” and default settings otherwise. The blacklist provided was derived from (Amemiya et al., 2019).

For each sample we provide bigwig covergae files and called peaks in bed files.
DOI: 10.5281/zenodo.13897222
title: Epigenome profiling identifies H3K27me3 regulation of extracellular matrix composition in human corticogenesis

description: Cell type-specific CUT&Tag data for H3K27me3 and H3K4me3 collected from human foetal cortical tissue (HT, Gestational week 12-14) and human cortical organoids (week 8). CUT&Tag data was acquired from the three major cell populations present in the developing neocortex. 50K nuclei from radial glia (RG), intermediate progenitors (IP) and neurons (N) were isolated from cortical tissue samples using FANS and processed for CUT&Tag. As a control 50K unstained (us) nuclei were also sorted and processed for CUT&Tag.

Cortical organoid samples were treated with a Polycomb repressive complex 2 inhibitor (EED226) or DMSO from week 3 to week 8 of culture. 

All data was acquired in duplicate. For human tissue two independent biological replicates were acquired. For organoids two independent batches of the same cell line (CRTDi004-A (Völkner et al., 2022)) were processed.

CUT&Tag bioinformatics analysis was done using the nf-core cutandrun pipeline (v3.2.2) (Cheshire et al., 2024; Ewels et al., 2020), with “--genome hg38 --macs-gsize 2805665311 --mito_name ‘chrM’ --normalization_binsize 1 --use_control ‘false’ --dedup_target_reads --peakcaller SEACR --seacr_peak_threshold 0.01” and default settings otherwise. The blacklist provided was derived from (Amemiya et al., 2019).

For each sample we provide bigwig covergae files and called peaks in bed files.
DOI: 10.15468/dl.8kdx2g
title: Occurrence Download

description: A dataset containing 264592 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Solidago L."
 ]
}

 The dataset includes 264592 records from 373 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065862-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2q9735
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fragilaria parasitica var. subconstricta Grunow, 1881",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.628 -23.023,35.6007 -22.9702,35.6007 -23.165,35.628 -23.023))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065875-250525065834625/datasets/export for details.
DOI: 10.15468/dl.n3n5w8
title: Occurrence Download

description: A dataset containing 586 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-95.24865 16.77768, -95.25219 16.77955, -95.2539 16.78266, -95.25978 16.79105, -95.26932 16.79176, -95.27104 16.78867, -95.28296 16.78709, -95.28898 16.78425, -95.30078 16.78863, -95.30879 16.79213, -95.31519 16.79812, -95.32087 16.80458, -95.33222 16.80946, -95.33345 16.81528, -95.33204 16.82213, -95.32946 16.82532, -95.33052 16.82991, -95.33987 16.83474, -95.34055 16.83796, -95.34518 16.84521, -95.34586 16.85291, -95.34863 16.85328, -95.35523 16.86324, -95.36205 16.85528, -95.36785 16.84949, -95.36915 16.84444, -95.37535 16.83453, -95.38003 16.82647, -95.38374 16.82044, -95.39404 16.81732, -95.39476 16.80537, -95.39861 16.79962, -95.41096 16.80304, -95.41977 16.80404, -95.4281 16.80129, -95.43598 16.79702, -95.44114 16.79038, -95.44762 16.78209, -95.45759 16.78281, -95.46168 16.77486, -95.46277 16.77009, -95.46616 16.76776, -95.46938 16.76125, -95.46908 16.75756, -95.47523 16.75515, -95.47725 16.75244, -95.47445 16.75138, -95.46126 16.75138, -95.45433 16.75368, -95.44904 16.75697, -95.44376 16.75993, -95.43913 16.76388, -95.43385 16.76782, -95.42987 16.77243, -95.42755 16.77802, -95.42357 16.78591, -95.41727 16.79447, -95.41067 16.79743, -95.40244 16.7971, -95.39518 16.79611, -95.38958 16.79512, -95.38133 16.7971, -95.37341 16.79644, -95.36648 16.80104, -95.36449 16.80466, -95.35854 16.80729, -95.35229 16.80433, -95.33748 16.79447, -95.33453 16.79216, -95.32793 16.79216, -95.32265 16.79381, -95.31902 16.79315, -95.3108 16.78624, -95.30454 16.78197, -95.29765 16.77506, -95.29337 16.77243, -95.28613 16.76848, -95.27953 16.76717, -95.27228 16.76618, -95.26899 16.76487, -95.26173 16.76421, -95.25679 16.76322, -95.25283 16.76454, -95.25183 16.76816, -95.25116 16.77243, -95.24917 16.77704, -95.24865 16.77768))"
 ]
}

 The dataset includes 586 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065877-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.setyws
title: Occurrence Download

description: A dataset containing 424 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Cisticola njombe Lynes, 1933",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 424 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065876-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6sznxq
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bursera ribana Rzed. & Calderón"
 ]
}

 The dataset includes 69 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065879-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2hzbmg
title: CCDC 2323066: Experimental Crystal Structure Determination

description: Related Article: Na Li, Xueyan Wu, Yan Lv, Jinxia Chi, Jixi Guo|2025|New J.Chem.|49|10530|doi:10.1039/D5NJ01482D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jkwbb
title: CCDC 2340882: Experimental Crystal Structure Determination

description: Related Article: Na Li, Xueyan Wu, Yan Lv, Jinxia Chi, Jixi Guo|2025|New J.Chem.|49|10530|doi:10.1039/D5NJ01482D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k6c6c
title: CCDC 2359602: Experimental Crystal Structure Determination

description: Related Article: Hui Zhang, Yu Liu, Zhengxiong Liu, Yin Wang, Wei Ren|2025|New J.Chem.|49|10949|doi:10.1039/D5NJ02125A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lmhqg
title: CCDC 2402026: Experimental Crystal Structure Determination

description: Related Article: Pattara Siripanich, Jierui Zhang, Martina Lessio, Carol Hua|2025|Mater. Chem. Front.|9|2087|doi:10.1039/D5QM00277J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lmhrh
title: CCDC 2402027: Experimental Crystal Structure Determination

description: Related Article: Pattara Siripanich, Jierui Zhang, Martina Lessio, Carol Hua|2025|Mater. Chem. Front.|9|2087|doi:10.1039/D5QM00277J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lnw5b
title: CCDC 2403342: Experimental Crystal Structure Determination

description: Related Article: Ziyan Cai, Ping Li, Xiaobo Yu, Lin Lai, Cilin Yu, Yuan Hu, Xiaolei Gao, Chenghui Zeng|2025|CrystEngComm|27|4304|doi:10.1039/D5CE00117J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lx8jb
title: CCDC 2410452: Experimental Crystal Structure Determination

description: Related Article: Daliya K. Shajan, Palanisamy Kandhan, Alexey N. Kuznetsov, Vladimir V. Chernyshev, Palash Sanphui|2025|CrystEngComm|27|4292|doi:10.1039/D5CE00215J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mcf5m
title: CCDC 2424050: Experimental Crystal Structure Determination

description: Related Article: Enrique Ordaz-Romero, Angela Y. Díaz-Flores, Sandra M. Rojas-Montoya, Luis Blancarte-Carrazco, Margarita Romero-Ávila, Pablo Labra-Vázquez, Rosa Santillan, Norberto Farfán|2025|New J.Chem.|49|10538|doi:10.1039/D5NJ00899A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m38np
title: CCDC 2416222: Experimental Crystal Structure Determination

description: Related Article: Jia Zou, Li Zhang, Zhengguo Chen, Haoran Li, Qianzai Zhou, Xinyu Wang, Ming Huang, SiJia Yu, Haijun Yang|2025|New J.Chem.|49|10922|doi:10.1039/D5NJ00733J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m4c9g
title: CCDC 2417265: Experimental Crystal Structure Determination

description: Related Article: Jia Zou, Li Zhang, Zhengguo Chen, Haoran Li, Qianzai Zhou, Xinyu Wang, Ming Huang, SiJia Yu, Haijun Yang|2025|New J.Chem.|49|10922|doi:10.1039/D5NJ00733J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.uxbzmg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fragilaria parasitica var. subconstricta Grunow, 1881",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.6306 -23.844,35.6007 -23.8125,35.6007 -24.0157,35.6306 -23.844))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065880-250525065834625/datasets/export for details.