cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14506311
title: Dataset published in the article "The Effects of the Coating and Aging of Biodegradable Polylactic Acid Membranes on In Vitro Primary Human Retinal Pigment Epithelium Cells"

description: Fig_2A-2D. Representative light microscopy images of (Fig_2A) passage 0 hRPE cells on a commercial PC 12-well plate and the same cells seeded at the same cell area density on (Fig_2B) commercial PC, (Fig_2C) uncoated electrospun PLA membranes, and (Fig_2D) coated electrospun PLA membranes after 21 days of culture. Representative images of the membranes without cells are shown in supplementary Figure S1 in the article for comparison. Red scale bar: 300 µm. PC: polycarbonate; PLA: polylactide; MG: Matrigel coated.

Fig_3. The quantification of pigmentation on the different membranes for the cultivation of hRPE cells. (A) A scatter plot showing the relative pigmented surface (RPS) in the images captured for several hRPE cultures on diverse supports specified accordingly. The lines represent the general trend of the data per supporting membrane (Black: Polycarbonate; Blue: Uncoated PLA; Red: Matrigel-coated PLA). (B) The mean RPS of the cultures on diverse supporting membranes (PC: polycarbonate; PLA: polylactide). Error bars: confidence interval (95% confidence). *** p < 0.001.

Fig_4. TEER values of hRPE cell cultured on commercial inserts (black, 9 ≤ n ≤ 22 donors), uncoated PLA (blue dots/line, 2 ≤ n ≤ 4 donors), and coated PLA (red dots/line, 2 ≤ n ≤ 4 donors). Lines represent general trend of data per supporting membrane (Black: Polycarbonate; Blue: Uncoated PLA; Red: Matrigel-coated PLA). PC: polycarbonate, PLA: polylactic acid.

Fig_5A-5B. Cell detachment properties of cultivated hRPE cells on different supporting membranes. (Fig_5A) hRPE cell cultures on PLA membranes being well attached (left) and with detaching extracellular matrix (right). (Fig_5B) Representation of amount of PLA membranes showing detachment (merged from 8 different donors in 4 independent experiments).

Fig_6. Relative expression of hRPE markers in cultivated hRPSs on different supporting membranes; BEST1 and RPE65 in hRPE cultivated on uncoated and coated PLA membranes in comparison to commercial polycarbonate inserts. Expression of monitored genes in commercial PC inserts was set to 1. Data are shown as ratios. PC: polycarbonate, UC: uncoated PLA membranes, MG: Matrical-coated PLA membranes; 3 donors; error: SEM, * p ≤ 0.05, ** p ≤ 0.01.

Fig_7A-7B. Genome integrity of hRPE cells plated on uncoated versus coated PLA. After 21 days in culture, hRPE cells were collected and genomic DNA was isolated. Cellular mtDNA copy number (Fig_7A) and mtDNA damage and nDNA damage (Fig_7B) in hRPE plated on different membranes were analyzed by qPCR-based methods; 3 donors; error: SEM.

Fig_8. Expression of target genes in hRPE plated on newly synthesized (<1 month) PLA membranes versus 21-month-old uncoated (UC) PLA membranes. Relative gene expressions of BEST1, RPE65, PAX6, ZO-1, and SOX9 were determined by RT-qPCR using GAPDH as internal control; 2 donors; error: SEM.
DOI: 10.17863/cam.64552
title: Data set for Visible‐light Promoted C–O Bond Formation with an Integrated Carbon Nitride‐Nickel Heterogeneous Photocatalyst

description: NMR - contains all NMR data (.doc, fid file) Mass result- contains all mass analysis (pdf, png) Other Characterization - contains UV-Vis, ATR-IR, XRD, XPS and ICP data (Origin, Excel) TEM - contains all TEM images (.tif)
DOI: 10.17863/cam.84096
title: Training data for article "An Accurate and Transferable Machine Learning Potential for Carbon"

description: This is the training data for the machine learned interatomic potential in the associated publication
DOI: 10.17863/cam.75508
title: Research data supporting "Drug-dependent inhibition of nucleotide hydrolysis in the heterodimeric ABC multidrug transporter PatAB from Streptococcus pneumoniae"

description: The bacterial heterodimeric ATP-binding cassette (ABC) multidrug exporter PatAB has a critical role in conferring antibiotic resistance in multidrug-resistant infections by Streptococcus pneumoniae. As with other heterodimeric ABC exporters, PatAB contains two transmembrane domains that form a drug translocation pathway for efflux and two nucleotide-binding domains that bind ATP, one of which is hydrolysed during transport. The structural and functional elements in heterodimeric ABC multidrug exporters that determine interactions with drugs and couple drug binding to nucleotide hydrolysis are not fully understood. Here, we used mass spectrometry techniques to determine the subunit stoichiometry in PatAB in our lactococcal expression system and investigate locations of drug binding using the fluorescent drug-mimetic azido-ethidium. Surprisingly, our analyses of azido-ethidium-labelled PatAB peptides point to ethidium binding in PatA nucleotide-binding domain, with the azido moiety crosslinked to residue Q521 in the H-like loop of the degenerate nucleotide-binding site. Investigation into this compound and residue’s role in nucleotide hydrolysis pointed to a reduction in the activity for a Q521A mutant and ethidium-dependent inhibition in both mutant and wild type. Most transported drugs did not stimulate or inhibit nucleotide hydrolysis of PatAB in detergent solution or lipidic nanodiscs. However, further examples for ethidium-like inhibition were found with propidium, novobiocin and coumermycin A1, which all inhibit nucleotide hydrolysis by a non-competitive mechanism. These data cast light on potential mechanisms by which drugs can regulate nucleotide hydrolysis by PatAB, which might involve a novel drug binding site near the nucleotide-binding domains. The research data in this dataset record support the publication by Guffick et al. in FEBS J. and refer to the figures that are incorporated in the paper, and the DNA and protein sequences under study. Descriptions of the experimental details and statistical analyses are included in the Materials and Methods and figure legends of the paper.
DOI: 10.17863/cam.23531
title: Risk-taking summary statistics UK Biobank

description: Here, we provide the summary statistics for our GWAS of self-reported risk-taking propensity amongst 436,236 white European participants of the UK Biobank (UKB) study, measured by the question: “Would you describe yourself as someone who takes risks?”. GWAS testing for associations between SNPs and self-reported risk-taking was performed using a linear mixed model (LMM) implemented in BOLT-LMM. Sex, age and genotyping array were included as covariates. SNPs were filtered based on info &gt;0.5 and minor allele frequency &gt;1%.
DOI: 10.17863/cam.49853
title: Research data of split workforces for all portfolio businesses 1881 supporting Radicic, D., Bennett, R.J. and Newton, G., 2017. Portfolio entrepreneurship in farming. Journal of Rural Studies, 55, 289-302

description: This file codes split portfolios into their separate occupations with workforce numbers by gender etc. as recorded in the 1881 census. All codes to ID and occupations are for the 1881 census from transcripts by the Genealogical Society of Utah (GSU), after BBCE cleaning and correcting codes by Bennett, Newton and Radicic, from the data deposit by: Schürer, Kevin and Woollard, Matthew (University of Essex) (2000) 1881 Census for England and Wales, the Channel Islands and the Isle of Man (Enhanced Version) [computer file] UKDA, SN-4177. GSU ID and Occodes can be recoded to I-CeM via look-up tables. This dataset is associated with the following publication: Radicic, D., Bennett, R.J. and Newton, G., 2017. Portfolio entrepreneurship in farming: Empirical evidence from the 1881 census for England and Wales. Journal of Rural Studies, 55, 289-302.
DOI: 10.17863/cam.106678
title: Research Data supporting "Enhancing electrochemical carbon dioxide capture with supercapacitors"

description: Electrochemical CO2 capture offers a supplementary approach to efficiently capturing CO2 from diverse sources when charged by renewable energy, followed by the release of captured CO2 and stored electricity as needed. Here the measurements were conducted using potentiostat, and the data was collected using EC-lab from BioLogic. These are Excel files for research data associated with the publication "Enhancing electrochemical carbon dioxide capture using supercapacitors".
DOI: 10.17863/cam.41646
title: Data for Full-field quantitative phase and polarisation-resolved imaging through an optical fibre bundle

description: This contains raw camera images and associated code required to construct fibre transmission matrices and recover images through the fibre. This is associated with the paper Full-field quantitative phase and polarisation-resolved imaging through an optical fibre bundle”, Optics Express, vol. 27, no. 17, Aug. 2019, doi:10.1364/OE.27.023929. It also contains .mat files for reproducing other figures in the paper
DOI: 10.17863/cam.27523
title: Research data supporting "Twenty-one years of heave monitoring in London Clay at Horseferry Road Basement".

description: This dataset provides details on the heave monitoring data, the site investigation data, and the calculations presented in the paper "Twenty-one years of heave monitoring in London Clay at Horseferry Road Basement". The dataset contains 13 files described as follows: "A1 - Site investigation cross-sections" contain cross-section drawings of the Horseferry Road Basement as of 1989 and form the basis of Fig. 2 of the paper. "A2 - Graphs of soil test results" present the results of laboratory tests of soil samples from Horseferry Road site in 1989. "A3 - Undrained shear strength data and calculations" combine undrained shear strength data from the 1962 and 1989 site investigations; the XLSX version of this file also includes the calculations producing Fig. 5 and Table 2 of the paper. "A4 - Piezometric profile with interpreted trendline" gives groundwater level data from the 1989 site investigation (Fig. 4 of paper). "A5 - Standard penetration test data and calculations" gives soil strength results from the 1989 site investigation. "B - Heave monitoring data 1967-89 and calculations" provides all survey data of settlement and heave of the Horseferry Road Basement during the 21 years of monitoring. The XLSX version includes calculations of theoretical best-fit and coefficients of consolidation, as presented in Fig. 6. "C - VDISP back-analysis of heave monitoring data at Horseferry Road, 1993" presents the calculations of drained stiffness and strength profile from an analysis produced in 1993 for use in the reconstruction of the site, as discussed in the "Analysis of heave" section of the paper; the computational results date from 1993 and the abridged summary was written by the editor of the dataset. "D - Site investigation factual report, 1989" contains borehole logs from the 1989 site investigation. The original data and scans are provided by the courtesy of Arup Geotechnics and Laing O'Rourke who kindly agreed to make this set of data publicly available for the benefit of industry and society.
DOI: 10.17863/cam.18197
title: Research data supporting 'Strong coupling superconductivity in a quasiperiodic host-guest structure'

description: Data underlying the figures shown in the publication 'Strong coupling superconductivity in a quasiperiodic host-guest structure', including resistivity versus temperature at different pressures and magnetic fields, the critical-field curve of high pressure bismuth, the high pressure magnetisation of bismuth, and the results of phonon dispersion calculations.
DOI: 10.17863/cam.79113
title: Research Data supporting "Human cytomegalovirus protein RL1 degrades the antiviral factor SLFN11 via recruitment of the CRL4 E3 ubiquitin ligase complex"

description: Supplemental Tables in the form of Excel spreadsheets for the manuscript. Please see readme document for details
DOI: 10.5281/zenodo.14505831
title: GEOLAB - Transnational Access project M3ARBLE - Micro / Macro Modelling of Ageing Ballast: validation with Lab Experiments

description: The Micro - Macro Modelling of Ageing Ballast: validation with Lab Experiments project (M3ARBLE) was conceived to investigate the behavior of ballast at various stages of its service life. The project aims to characterize the mechanical behavior of ballast when it is new and after it has been subjected to numerous train passages and the effects of environmental conditions, which lead to degradation mechanisms such as abrasion, particle breakage, and pore structure contamination. By identifying the differences in the ballast behavior, the project seeks to select appropriate constitutive models and parameters for each degradation stage. These models, then, can be integrated into Finite Element (FE) numerical tools to predict vibrations at different points within the railway structure and surrounding ground.

To achieve this goal, M3ARBLE employs Discrete Element (DE) simulations of ballast samples under different conditions. These simulations replicate simple shear tests that encompass a range of loading rates and frequencies, reflecting the quasi-static and dynamic loads imposed by train passages. Calibration and validation of the DE model require experimental data, for which the large-scale triaxial apparatus at the Slovenian National Building and Civil Engineering Institute (ZAG) has been utilized as part of the GeoLab project.

This document outlines the experimental procedures and presents preliminary results from two cyclic simple shear tests conducted on different ballast samples using the largescale triaxial apparatus from ZAG.
DOI: 10.5281/zenodo.14505832
title: GEOLAB - Transnational Access project M3ARBLE - Micro / Macro Modelling of Ageing Ballast: validation with Lab Experiments

description: The Micro - Macro Modelling of Ageing Ballast: validation with Lab Experiments project (M3ARBLE) was conceived to investigate the behavior of ballast at various stages of its service life. The project aims to characterize the mechanical behavior of ballast when it is new and after it has been subjected to numerous train passages and the effects of environmental conditions, which lead to degradation mechanisms such as abrasion, particle breakage, and pore structure contamination. By identifying the differences in the ballast behavior, the project seeks to select appropriate constitutive models and parameters for each degradation stage. These models, then, can be integrated into Finite Element (FE) numerical tools to predict vibrations at different points within the railway structure and surrounding ground.

To achieve this goal, M3ARBLE employs Discrete Element (DE) simulations of ballast samples under different conditions. These simulations replicate simple shear tests that encompass a range of loading rates and frequencies, reflecting the quasi-static and dynamic loads imposed by train passages. Calibration and validation of the DE model require experimental data, for which the large-scale triaxial apparatus at the Slovenian National Building and Civil Engineering Institute (ZAG) has been utilized as part of the GeoLab project.

This document outlines the experimental procedures and presents preliminary results from two cyclic simple shear tests conducted on different ballast samples using the largescale triaxial apparatus from ZAG.
DOI: 10.17863/cam.95550
title: Research Data Supporting Conference Paper: "In situ studies of a'' evolution during cyclic testing of Ti-24Nb-4Zr-8Sn"

description: This dataset is to support the associated publication. SXRD data was obtained in transmission Debye-Scherrer geometry and analysed by considering full-ring integrations. Mechanical testing was performed in stress control at a quasi-static loading rate. Detailed methodology can be found in the associated manuscript, which is available open access from the publisher. Note that the DOI listed for the associated publication is for the entire chapter of the conference proceedings. The associated paper forms part of this chapter.
DOI: 10.17863/cam.108020
title: Research Data Supporting "Identifying Current Collectors That Enable Light-Battery Interactions"

description: This is a zipped file containing research data supporting the publication "Identifying Current Collectors That Enable Light-Battery Interactions", published in Small Methods. The datasets are organized by figure. UV vis data was collected in a Perkin-Elmer Lambda 750 in transmission mode, with the spectra smoothened by a Savitzky–Golay filter prior to plotting. LSV scans were carried out in a Biologic VMP-3 potentiostat using Zn/Li metal as a counter/reference electrode at a scan rate of 5mVs-1. Python code for plotting the LSV curves and transmission data is provided. All electrochemical cycling data was carried out on a Biologic BCS-800 potentiostat, at different current densities (24, 60, 120, 240 mA/g) and long-term cycling at 100 mA/g. Cells were run in triplicates with the mean value and standard deviation shown in the manuscript. The mass loading was 4-4.3 mg/cm2.
DOI: 10.17863/cam.65674
title: Experimental Data supporting 'Surface Wave Transmission Line Theory for Single and Many Wire Systems'

description: These data were obtained with a 2-Port Vector Network Analyzer HP8722D (VNA). Two Wire Data: Using planar surface wave launchers and 50cm uncoated copper wire with 0.5mm diameter; wire distance ca. 1cm Port Nomenclature for S-Parameters Port 4|----------------------------------|Port 2 Port 3|----------------------------------|Port 1 Thus, e.g. S31.S2P contains 2-Port S-parameters with VNA connected to Port 1 and Port 3. Ports 2 and 4 are terminated with 50 Ohms. The Two_Wire_Eigenvectors.csv file contains the eigenvectors of a matrix H which is created using the transmission values within the S-parameter files (within the files known as S21 but should not be confused with the port definitions above) as follows H=([S31, S41]; [S32, S42]). Three Wire Data: distance ca. 1cm for lower two wires, 2 cm for top two wires. Using planar surface wave launchers and 50cm uncoated copper wire with 0.5mm diameter. Port Nomenclature for S-Parameters Port 6|----------------------------------|Port 3 Port 5|----------------------------------|Port 2 Port 4|----------------------------------|Port 1 Thus, e.g. S41.S2P contains 2-Port S-parameters with VNA connected to Port 1 and Port 4. Ports 2,3,5,6 are terminated with 50 Ohms. The Three_Wire_Eigenvectors.csv file contains the eigenvectors of a matrix H which is created using the transmission values within the S-parameter files (within the files known as S21 but should not be confused with the port definitions above) as follows H=([S41, S51, S61]; [S42, S52, S62];[S43, S53, S63]). For more information please see associated publication
DOI: 10.17863/cam.76015
title: Research data supporting the DAiSIeS study (Diet, Activity and Screening after gestational diabetes: an Interview Study)

description: This entry relates to data collected as part of the DAiSIeS study to inform strategies to improve care for mothers after a pregnancy affected by gestational diabetes in relation to risk of type 2 diabetes after delivery. The dataset is the pseudo-anonymised transcripts from the qualitative interviews as part of the study. Consent was given by participants to share anonymised data with other responsible researchers. As consent was not given to share publicly it is not possible to add the data to the repository. Instead, the data are stored within the Primary Care Unit and researchers can request access by contacting Dr Rebecca Dennison (rl423@medschl.cam.ac.uk) or PCU_DATA@medschl.cam.ac.uk. Applicants will be required to complete a Data Access Agreement that will indicate the criteria for data access and conditions for research use and will incorporate privacy and confidentiality standards to ensure data security. The schedule used for the qualitative interviews as part of the study is attached with this record.
DOI: 10.17863/cam.7453
title: Research data supporting "Machine learning based interatomic potential for amorphous carbon"

description: Raw data relevant to the GAP interatomic potential model described in the publication, including output of molecular-dynamics trajectories, DFT reference data, and input files for GAP fitting. Due to the large file sizes, datasets from DFT-based molecular-dynamics simulations ("..._cp2k.tar.gz") and from GAP-based surface simulations ("..._surfaces.tar.gz") are provided as separate archives. The other data, including the GAP fitting input, are included in the main data file.
DOI: 10.15468/dl.fqyxp3
title: Occurrence Download

description: A dataset containing 601 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Unio delphinus Spengler, 1793",
 "Year 2001-2024"
 ]
}

 The dataset includes 601 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037615-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.54494
title: Random effects models for complex designs-plaid

description: See the file 'Plaid_Data-description.docx' for a detailed description of the dataset. Plaid designs are characterised by having one set of treatments applied to rows and another set of treatments applied to columns. In a 2003 publication, Farewell and Herzberg presented an analysis of variance structure for such designs. They presented an example of a study in which medical practitioners, trained in different ways, evaluated a series of videos of patients obtained under a variety of conditions. However, their analysis did not take full account of all error terms. In this paper, a more comprehensive analysis of this study is presented, informed by the recognition that the study can also be regarded as a two-phase design. The development of random effects models is outlined and the potential importance of block-treatment interactions is highlighted. The use of a variety of techniques is shown to lead to a better understanding of the study. Examination of the variance components involved in the expected mean squares is demonstrated to have particular value in identifying appropriate error terms for F-tests derived from an analysis of variance table. A package such as ASReml can also be used provided an appropriate error structure is specified. The methods presented can be applied to the design and analysis of other complex studies in which participants supply multiple measurements under a variety of conditions.
DOI: 10.17863/cam.78813
title: Research data supporting "Episodic Memory Precision and Reality Monitoring Following Stimulation of Angular Gyrus"

description: The main spreadsheet contains memory precision and reality monitoring accuracy across trials. Each sheet contains data from each experiment. Supplementary CSV files contain trial-level data. $$ \ $$ The original file 'Data_Long_Behavioural_Perceived_Imagined.csv' contained an error in the condition names, and has been replaced with the corrected file 'Data_Long_Behavioural_Perceived_Imagined_updated.csv'.
DOI: 10.17863/cam.8607
title: Research data supporting "Numerical Evidence for Thermally Induced Monopoles"

description: This dataset contains the simulation software and all input files required to reproduce the main results reported in the publication. The zip-file contains a modified version of the software package LAMMPS (14Jun16) with additional source files for the off-centre Stockmayer model, installation instructions, input scripts and equilibrated structures. For more information please download and extract the archive and have a look at the README file.
DOI: 10.17863/cam.23511
title: Summary statistics relating to "Elucidating the genetic basis of social interaction and isolation"

description: Summary statistics relating to GWAS analysis of loneliness, and attendance at particular social activities, as well as MTAG results relating to a combined analysis of loneliness and social isolation.