cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/e136342v1
title: DATA and CODES for: Distortions and the Structure of the World Economy

description: We model the world economy as one system of endogenous input-output relationships subject to frictions and study how the world’s input-output structure and world’s GDP change due to changes in frictions. We derive a sufficient statistic to identify frictions from the observed world input-output matrix, which we fully match for the year 2011. Our main empirical result is to determine how changes in internal frictions (affecting transactions across sectors within countries) impact the whole structure of the world’s economy and show that they have a much larger effect on world’s GDP than external frictions (affecting transactions across countries). We also use our approach to study the role of internal frictions during the Great Recession of 2007-2009. We document the change in internal trade across regions, and find for the case of the United States, that internal frictions explain 4.5 percent of the fall in external trade and 22.4 percent of the fall in internal trade during the Great Recession.
DOI: 10.3886/e130329
title: Data and Code for: Short-Term Planning, Monetary Policy, and Macroeconomic Persistence

description: We estimate a behavioral New Keynesian (NK) model in which households and firms plan over a finite horizon. The finite-horizon planning (FHP) model outperforms rational expectations versions of the NK model as well as other behavioral NK models. In the FHP model, households and firms are forward-looking in thinking about events over their planning horizon but are backward looking regarding events beyond that point. This gives rise to substantial aggregate persistence without resorting to additional features such as habit persistence and price contracts indexed to lagged inflation.<br><br>
DOI: 10.3886/e130329v1
title: Data and Code for: Short-Term Planning, Monetary Policy, and Macroeconomic Persistence

description: We estimate a behavioral New Keynesian (NK) model in which households and firms plan over a finite horizon. The finite-horizon planning (FHP) model outperforms rational expectations versions of the NK model as well as other behavioral NK models. In the FHP model, households and firms are forward-looking in thinking about events over their planning horizon but are backward looking regarding events beyond that point. This gives rise to substantial aggregate persistence without resorting to additional features such as habit persistence and price contracts indexed to lagged inflation.<br><br>
DOI: 10.5281/zenodo.7081622
title: OME-Zarr 3D hiPSCs with labels & measurements, 2x2 field of views

description: These are 2 small OME-Zarr files of the data from 10.5281/zenodo.7057076. They have been processed using fractal-client 0.1.2, fractal-server 0.1.2 and fractal-tasks-core 0.1.3 using this workflow: https://github.com/fractal-analytics-platform/fractal/commit/71686abecf153cdea0defb559a973035e11b8ce6 Both Zarr files are Zip-compressed to allow easier upload & download from Zenodo. 20200812-CardiomyocyteDifferentiation14-Cycle1.zarr contains 3 3D channels, a nuclear segmentation produced by cellpose as labels and a table with regions of interest for the 4 field of views contained in this data. 20200812-CardiomyocyteDifferentiation14-Cycle1_mip.zarr contains the same 3 channels, but as maximum intensity projections. It contains nuclear segmentation through cellpose. It also contains 2 tables: The region of interests like in the 3D data, as well as measurements performed with napari-skimage-regionprops. The tables are stored in the OME-Zarr file according to the proposed OME-NGFF table spec in AnnData. The 3 channels are: - 0: DAPI, nuclear stain - 1: nanog, antibody staining with Bio-Techne AG, AF1997-SP, Lot KKJ0617121 for the stemness marker nanog - 2: Lamin B1, antibody staining with Abcam, ab16048, Lot GR3244890-2 for the nuclear envelope marker Lamin B1
DOI: 10.6084/m9.figshare.21222064
title: Dead men still tell tales: bivalve death assemblages record dynamics and consequences of recent biological invasions in Kingston Harbour, Jamaica

description: Sample counts
DOI: 10.6084/m9.figshare.21222064.v1
title: Dead men still tell tales: bivalve death assemblages record dynamics and consequences of recent biological invasions in Kingston Harbour, Jamaica

description: Sample counts
DOI: 10.3886/e130141
title: Data and Code for: News Shocks under Financial Frictions (AEJ:MACRO)

description: We examine the dynamic effects and empirical role of TFP news shocks in the context of frictions in financial markets. We document two new facts using VAR methods. First, a (positive) shock to future TFP generates a significant decline in various credit spread indicators considered in the macro-finance literature. The decline in the credit spread indicators is associated with a robust improvement in credit supply indicators, along with a broad based expansion in economic activity. Second, VAR methods also establish a tight link between TFP news shocks and shocks that explain the majority of un-forecastable movements in credit spread indicators. These two facts provide robust evidence on the importance of movements in credit spreads for the propagation of news shocks. A DSGE model enriched with a financial sector generates very similar quantitative dynamics and shows that strong linkages between leveraged equity and excess premiums, which vary inversely with balance sheet conditions, are critical for the amplification of TFP news shocks. The consistent assessment from both methodologies provides support for the traditional `news view' of aggregate fluctuations.<br>
description: Smallest Geographic Unit: USA
DOI: 10.3886/e130141v1
title: Data and Code for: News Shocks under Financial Frictions (AEJ:MACRO)

description: We examine the dynamic effects and empirical role of TFP news shocks in the context of frictions in financial markets. We document two new facts using VAR methods. First, a (positive) shock to future TFP generates a significant decline in various credit spread indicators considered in the macro-finance literature. The decline in the credit spread indicators is associated with a robust improvement in credit supply indicators, along with a broad based expansion in economic activity. Second, VAR methods also establish a tight link between TFP news shocks and shocks that explain the majority of un-forecastable movements in credit spread indicators. These two facts provide robust evidence on the importance of movements in credit spreads for the propagation of news shocks. A DSGE model enriched with a financial sector generates very similar quantitative dynamics and shows that strong linkages between leveraged equity and excess premiums, which vary inversely with balance sheet conditions, are critical for the amplification of TFP news shocks. The consistent assessment from both methodologies provides support for the traditional `news view' of aggregate fluctuations.<br>
description: Smallest Geographic Unit: USA
DOI: 10.6084/m9.figshare.20800108.v1
title: Enabling faster subcutaneous delivery of larger volume, high viscosity fluids

description: Many current subcutaneous (SC) biologic therapies may require &gt;1 mL volume or have increased viscosity, necessitating new delivery system approaches. This study evaluated 2-mL large-volume autoinjector (LVAI) delivery performance across varying solution viscosities and design inputs to assess the design space and identify configurations that produce practical injection times. Investigational LVAI delivery duration and volume, depot location, and tissue effects were examined in both air and in vivo models across various pre-filled syringe (PFS) cannula types (27 G Ultra-thin wall [UTW], 27 G special thin wall [STW], or 29 G thin-wall [TW]), drive spring forces (SF<sub>LOW</sub> or SF<sub>HIGH</sub>), and Newtonian solutions (2.3–50 centipoise [cP]). Within each design configuration, increasing PFS internal diameters and spring forces reduced delivery times, while increasing viscosity increased times. The 27 G UTW PFS/SF<sub>HIGH</sub> combination achieved shorter delivery times across all injection conditions, with 2 mL in vivo durations &lt;15 seconds at ≤31 cP and routinely &lt;20 seconds at 39 and 51 cP, with nominal and transitory tissue effects. PFS cannula and spring force combinations can be tailored to achieve various injection durations across viscosities, while UTW PFS enables faster rates to potentially better accommodate human factors during LVAI injection, especially at high viscosity.
DOI: 10.6084/m9.figshare.20800108
title: Enabling faster subcutaneous delivery of larger volume, high viscosity fluids

description: Many current subcutaneous (SC) biologic therapies may require &gt;1 mL volume or have increased viscosity, necessitating new delivery system approaches. This study evaluated 2-mL large-volume autoinjector (LVAI) delivery performance across varying solution viscosities and design inputs to assess the design space and identify configurations that produce practical injection times. Investigational LVAI delivery duration and volume, depot location, and tissue effects were examined in both air and in vivo models across various pre-filled syringe (PFS) cannula types (27 G Ultra-thin wall [UTW], 27 G special thin wall [STW], or 29 G thin-wall [TW]), drive spring forces (SF<sub>LOW</sub> or SF<sub>HIGH</sub>), and Newtonian solutions (2.3–50 centipoise [cP]). Within each design configuration, increasing PFS internal diameters and spring forces reduced delivery times, while increasing viscosity increased times. The 27 G UTW PFS/SF<sub>HIGH</sub> combination achieved shorter delivery times across all injection conditions, with 2 mL in vivo durations &lt;15 seconds at ≤31 cP and routinely &lt;20 seconds at 39 and 51 cP, with nominal and transitory tissue effects. PFS cannula and spring force combinations can be tailored to achieve various injection durations across viscosities, while UTW PFS enables faster rates to potentially better accommodate human factors during LVAI injection, especially at high viscosity.
DOI: 10.5281/zenodo.6684162
title: Datasets for Lorentz electron ptychography towards sub-nanometer resolution imaging of magnetic textures

description: These data sets are the raw experimental data used in a Letter titled, Lorentz electron ptychography for imaging magnetic textures beyond the diffraction limit published on Nature Nanotechnology. The related paper should be cited whenever the datasets are used. Reference: Zhen Chen, Emrah Turgut, Yi Jiang, Kayla X. Nguyen, Matthew J. Stolt, Song Jin, Daniel C. Ralph, Gregory D. Fuchs, David A. Muller, Lorentz electron ptychography for imaging magnetic textures beyond the diffraction limit. Nature Nanotechnology, in press, https://doi.org/10.1038/s41565-022-01224-y (2022). The file format is Matlab's *.mat file with version 7.3. The diffraction patterns are stored as the variable 'cbed'. Experimental conditions can be found in data_info.txt and the related paper.
DOI: 10.3886/e140201v1
title: Data and Code for: Monetary Policy and Liquidity Constraints

description: We quantify the relationship between the response of output to monetary policy shocks and the share of liquidity constrained households. We do so in the context of the euro area, using a Local Projections Instrumental Variables estimation. We construct an instrument for changes in interest rates from changes in overnight indexed swap rates in a narrow time window around ECB announcements. Monetary policy shocks have heterogeneous effects on output across countries. Using micro data, we show that the elasticity of output to monetary policy shocks is larger in countries that have a larger fraction of households that are liquidity constrained.
description: Survey of Households in Euro Area countries.
DOI: 10.6084/m9.figshare.20271141
title: microstructure-library

description: 3D microstructure dataset generated from 2D micrographs using SliceGAN
DOI: 10.6084/m9.figshare.20271141.v1
title: microstructure-library

description: 3D microstructure dataset generated from 2D micrographs using SliceGAN
DOI: 10.3886/e141661
title: Data and Code for: Optimal Public Debt with Life Cycle Motives

description: This paper determines optimal public debt in a life cycle model with incomplete markets that matches the empirically observed variation in consumption, labor and savings, both in the cross section of U.S. households and by age. We find that public savings, not public debt, equal to 168% of output is optimal, primarily due to the influence of the life cycle on household decision-making. By inducing a lower interest rate, public savings slows the empirically observed rate of consumption and leisure growth over an average household's lifetime, and the resulting flatter allocation of lifetime consumption and leisure improves welfare. We show that when including the life cycle these welfare benefits are large; so large that, on net, they outweigh the transitional costs from a tax-financed public debt elimination. <br><br>
DOI: 10.3886/e141661v1
title: Data and Code for: Optimal Public Debt with Life Cycle Motives

description: This paper determines optimal public debt in a life cycle model with incomplete markets that matches the empirically observed variation in consumption, labor and savings, both in the cross section of U.S. households and by age. We find that public savings, not public debt, equal to 168% of output is optimal, primarily due to the influence of the life cycle on household decision-making. By inducing a lower interest rate, public savings slows the empirically observed rate of consumption and leisure growth over an average household's lifetime, and the resulting flatter allocation of lifetime consumption and leisure improves welfare. We show that when including the life cycle these welfare benefits are large; so large that, on net, they outweigh the transitional costs from a tax-financed public debt elimination. <br><br>
DOI: 10.5281/zenodo.7120474
title: Exact structure match queries against BindingDB between September 2004 and August 2012

description: Exact structure match queries against BindingDB between September 2004 and August 2012 The queries were generated by users of the BindingDB web interface between September 2004 and mid-August of 2012. Structures were sketched using Marvin. If you use this data set, please cite: Liu T, Lin Y, Wen X, Jorissen RN, Gilson MK.<br> BindingDB: a web-accessible database of experimentally determined<br> protein-ligand binding affinities.<br> Nucleic Acids Res. 2007 Jan;35(Database issue):D198-201.<br> doi: 10.1093/nar/gkl999<br> Epub 2006 Dec 1<br> PMID: 17145705<br> PMCID: PMC1751547<br> https://doi.org/10.1093%2Fnar%2Fgkl999 The included files are: README<br> ------ A text file with more details about the data sets and their provenance. exact.dat.zstd<br> -------------- The processed data set with 3,414,228 queries, one query per line. The file is compressed using Zstandard. The queries are a combination of CXSMILES, non-standard SMILES, and non-SMILES strings. BindingDB_exact.dat<br> ------------------- A cleaned-up subset with 119,883 entries, one entry per line. Each entry has two columns, separated by a tab. The first column is the (possibly cleaned-up) CXSMILES from the source data, the second is the number of times the CXSMILES occurs in the source data. Each CXSMILES is present only once in the data set. NOTE: the CXSMILES have not be canonicalized. Canonicalization using RDKit 2021.09.4 results in 94,362 unique queries, but causes the extended CXSMILES annotations to disappear. bindingdb_cleanup.py<br> -------------------- The Python program used to convert exact.dat.zstd to BindingDB_exact.dat. History<br> ======= 15 August 2012<br> -------------- Contribution to the SQC. Tiqing Lui 18 Aug 2012<br> ----------- Initial import into the SQC Andrew Dalke 28 Aug 2022<br> ----------- Ported bindingdb_cleanup.py to Python 3. Added cleanup methods to add brackets to "(O-)", "C@@", "nH", and "NH" when appropriate. Simplified bindingdb_cleanup.py by dropping support for tools other than RKit. Updated for distribution on Zenodo. Andrew Dalke
DOI: 10.5281/zenodo.7120473
title: Exact structure match queries against BindingDB between September 2004 and August 2012

description: Exact structure match queries against BindingDB between September 2004 and August 2012 The queries were generated by users of the BindingDB web interface between September 2004 and mid-August of 2012. Structures were sketched using Marvin. If you use this data set, please cite: Liu T, Lin Y, Wen X, Jorissen RN, Gilson MK.<br> BindingDB: a web-accessible database of experimentally determined<br> protein-ligand binding affinities.<br> Nucleic Acids Res. 2007 Jan;35(Database issue):D198-201.<br> doi: 10.1093/nar/gkl999<br> Epub 2006 Dec 1<br> PMID: 17145705<br> PMCID: PMC1751547<br> https://doi.org/10.1093%2Fnar%2Fgkl999 The included files are: README<br> ------ A text file with more details about the data sets and their provenance. exact.dat.zstd<br> -------------- The processed data set with 3,414,228 queries, one query per line. The file is compressed using Zstandard. The queries are a combination of CXSMILES, non-standard SMILES, and non-SMILES strings. BindingDB_exact.dat<br> ------------------- A cleaned-up subset with 119,883 entries, one entry per line. Each entry has two columns, separated by a tab. The first column is the (possibly cleaned-up) CXSMILES from the source data, the second is the number of times the CXSMILES occurs in the source data. Each CXSMILES is present only once in the data set. NOTE: the CXSMILES have not be canonicalized. Canonicalization using RDKit 2021.09.4 results in 94,362 unique queries, but causes the extended CXSMILES annotations to disappear. bindingdb_cleanup.py<br> -------------------- The Python program used to convert exact.dat.zstd to BindingDB_exact.dat. History<br> ======= 15 August 2012<br> -------------- Contribution to the SQC. Tiqing Lui 18 Aug 2012<br> ----------- Initial import into the SQC Andrew Dalke 28 Aug 2022<br> ----------- Ported bindingdb_cleanup.py to Python 3. Added cleanup methods to add brackets to "(O-)", "C@@", "nH", and "NH" when appropriate. Simplified bindingdb_cleanup.py by dropping support for tools other than RKit. Updated for distribution on Zenodo. Andrew Dalke
DOI: 10.3886/e140882
title: Data and Code for Asymmetric effects of monetary policy in regional housing markets

description: The responsiveness of house prices to monetary policy shocks depends on the nature of the shock - expansionary versus contractionary - and on local housing supply elasticities. These findings are established using a panel of 263 US metropolitan areas. Expansionary monetary policy shocks have a larger impact on house prices in supply inelastic areas. Contractionary shocks are orthogonal to housing supply elasticities. In supply elastic areas, contractionary shocks have a greater impact on house prices than expansionary shocks. The opposite holds true in supply inelastic areas. We attribute this to asymmetric housing supply adjustments.
description: 263 U.S. Metropolitan Statistical Areas.
DOI: 10.3886/e140882v1
title: Data and Code for Asymmetric effects of monetary policy in regional housing markets

description: The responsiveness of house prices to monetary policy shocks depends on the nature of the shock - expansionary versus contractionary - and on local housing supply elasticities. These findings are established using a panel of 263 US metropolitan areas. Expansionary monetary policy shocks have a larger impact on house prices in supply inelastic areas. Contractionary shocks are orthogonal to housing supply elasticities. In supply elastic areas, contractionary shocks have a greater impact on house prices than expansionary shocks. The opposite holds true in supply inelastic areas. We attribute this to asymmetric housing supply adjustments.
description: 263 U.S. Metropolitan Statistical Areas.
DOI: 10.5281/zenodo.7025646
title: Data for "Qubit vitrification and entanglement criticality on a quantum processor"

description: Data includes the filtered measurement results from the IBM Q devices, as well as the code to generate the figures. See the README file for more information regarding the data.
DOI: 10.5281/zenodo.7120441
title: Data for "Qubit vitrification and entanglement criticality on a quantum processor"

description: Data includes the filtered measurement results from the IBM Q devices, as well as the code to generate the figures. See the README file for more information regarding the data.
DOI: 10.5281/zenodo.7025645
title: Data for "Qubit vitrification and entanglement criticality on a quantum processor"

description: Data includes the filtered measurement results from the IBM Q devices, as well as the code to generate the figures. See the README file for more information regarding the data.
DOI: 10.5255/ukda-sn-855058
title: Sustainable Poverty Alleviation from Coastal Ecosystem Services: Wellbeing, 2013-2017

description: The first part of the SPACES project involved populating ES-WB chains with data obtained from each of the 8 sites studied to help answer one of the overarching questions seeking to understand the complex and elastic relationship between ecosystem and wellbeing outcomes (ES – WB chains). This was aimed at helping us explore more dynamic and policy-relevant aspects of ES-WB links as we highlighted relationships and links between chains, feedbacks within chains and identified windows of opportunity where interventions could lead to ES benefits to those most in need. However after the first components of the project were realized, a few gaps were still apparent. Firstly, access had not been sufficiently explored for different goods perceived in the survey (what is needed to gain access to specific livelihoods/food sources). Secondly, the WB contribution of ES goods had not been explored in enough detail. For example, the income of fishermen does not necessarily solely contribute to their economic security but may have an impact on their subjective WB, respect, relationships, autonomy, etc. Since SPACES aimed to inform policy and suggest potential interventions and highlight windows of opportunity to improve the flow of ES benefits to those most in need (and hence improve their WB), we needed to ensure that proposed interventions didn’t have negative effects on aspects of individuals’ wider WB (as opposed to ES specific WB). Therefore, we also wanted to explore individuals’ general WB and perceived factors that influence it. The proposed methodology consequently aimed to (1) focus on a wide range of ES chains, not solely monetary or pre-defined ES benefits, (2) look at the contribution of ES goods/value attributes to different aspects of WB, (3) look at access mechanisms to each ES benefit, and (4) look at WB in a wider context (not solely linked to ES).
DOI: 10.5517/ccdc.csd.cc28xdtf
title: CCDC 2112675: Experimental Crystal Structure Determination

description: Related Article: Manish Rana, Aysha Fatima, Nazia Siddiqui, Saiema Ahmedi, Sajad Hussain Dar, Nikhat Manzoor, Saleem Javed, Rahisuddin|2022|Polycyclic Aromat.Compd.|1|1|doi:10.1080/10406638.2022.2112707
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.