cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13316839.v1
title: Additional file 4 of Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity

description: Additional file 4: Supplementary Data 3. Overlapping results between SMRT-OTS and Nano-OTS for ATXN10, MMP14 and NEK1.
DOI: 10.6084/m9.figshare.13316842.v1
title: Additional file 5 of Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity

description: Additional file 5: Supplementary Data 4. Downsampled Nano-OTS results for ATXN10, MMP14 and NEK1.
DOI: 10.6084/m9.figshare.13316854.v1
title: Additional file 9 of Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity

description: Additional file 9: Supplementary Data 8. Nano-OTS results for CRYAA, HSPA1A, IKBKG, OPN1LW, OTOA, and STRC.
DOI: 10.6084/m9.figshare.13316824
title: Additional file 12 of Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity

description: Additional file 12: Supplementary Data 11. Large insertions detected at the MMP14 and NEK1 on-target sites in edited fibroblasts.
DOI: 10.6084/m9.figshare.13316845.v1
title: Additional file 6 of Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity

description: Additional file 6: Supplementary Data 5. CHOPCHOP Cas9 cleavage site predictions for ATXN10, MMP14 and NEK1.
DOI: 10.6084/m9.figshare.13316854
title: Additional file 9 of Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity

description: Additional file 9: Supplementary Data 8. Nano-OTS results for CRYAA, HSPA1A, IKBKG, OPN1LW, OTOA, and STRC.
DOI: 10.6084/m9.figshare.13316842
title: Additional file 5 of Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity

description: Additional file 5: Supplementary Data 4. Downsampled Nano-OTS results for ATXN10, MMP14 and NEK1.
DOI: 10.6084/m9.figshare.13316881.v1
title: Additional file 5 of Immunoproteomics approach revealed elevated autoantibody levels against ANXA1 in early stage gallbladder carcinoma

description: Additional file 5: Supplementary Table S2. List of proteins and peptides identified by mass spectrometric analysis from immunoreactive protein spots.
DOI: 10.6084/m9.figshare.13316881
title: Additional file 5 of Immunoproteomics approach revealed elevated autoantibody levels against ANXA1 in early stage gallbladder carcinoma

description: Additional file 5: Supplementary Table S2. List of proteins and peptides identified by mass spectrometric analysis from immunoreactive protein spots.
DOI: 10.6084/m9.figshare.13316906
title: Additional file 1 of Reconstitution of Drosophila and human chromatins by wheat germ cell-free co-expression system

description: Additional file 1: Supplementary Table S1. Protein list of mass spectrometry analysis of the wheat germ extract. Results of proteins determined in the wheat germ cell-free extract (WEPRO7240H). Seven hundred forty-four proteins were identified in the total of 61,984 protein sequences listed in the FASTA file. The score indicated the enrichment of proteins calculated by the Proteome Discoverer.
DOI: 10.6084/m9.figshare.13316906.v1
title: Additional file 1 of Reconstitution of Drosophila and human chromatins by wheat germ cell-free co-expression system

description: Additional file 1: Supplementary Table S1. Protein list of mass spectrometry analysis of the wheat germ extract. Results of proteins determined in the wheat germ cell-free extract (WEPRO7240H). Seven hundred forty-four proteins were identified in the total of 61,984 protein sequences listed in the FASTA file. The score indicated the enrichment of proteins calculated by the Proteome Discoverer.
DOI: 10.6084/m9.figshare.13316935.v1
title: Additional file 1 of Digital tools as promoters for person-centered care practices in chronic care? Healthcare professionals’ experiences from rheumatology care

description: Additional file 1.
DOI: 10.6084/m9.figshare.13316935
title: Additional file 1 of Digital tools as promoters for person-centered care practices in chronic care? Healthcare professionals’ experiences from rheumatology care

description: Additional file 1.
DOI: 10.5281/zenodo.4301174
title: Heterogeneity in transmissibility and shedding SARS-CoV-2 via droplets and aerosols

description: Raw data collected from the systematic review + outputs from analyses and models. The link to these data will be made publicly available upon completion of the peer-review process. For peer reviewers, please request access.
DOI: 10.6084/m9.figshare.11979294
title: Additional file 2 of The low-copy nuclear gene Agt1 as a novel DNA barcoding marker for Bromeliaceae

description: Additional file 2. Supplementary_Table_S2_CD_Hit_MegaBLAST.
DOI: 10.6084/m9.figshare.11979303.v1
title: Additional file 3 of The low-copy nuclear gene Agt1 as a novel DNA barcoding marker for Bromeliaceae

description: Additional file 3. Supplementary_Material_S3_Agt1_Alignment_Tillandsia_ML_Tree.
DOI: 10.6084/m9.figshare.11979312.v1
title: Additional file 4 of The low-copy nuclear gene Agt1 as a novel DNA barcoding marker for Bromeliaceae

description: Additional file 4. Supplementary_Material_S4_Agt1_Cloning.
DOI: 10.6084/m9.figshare.11979294.v1
title: Additional file 2 of The low-copy nuclear gene Agt1 as a novel DNA barcoding marker for Bromeliaceae

description: Additional file 2. Supplementary_Table_S2_CD_Hit_MegaBLAST.
DOI: 10.6084/m9.figshare.11979303
title: Additional file 3 of The low-copy nuclear gene Agt1 as a novel DNA barcoding marker for Bromeliaceae

description: Additional file 3. Supplementary_Material_S3_Agt1_Alignment_Tillandsia_ML_Tree.
DOI: 10.6084/m9.figshare.11979312
title: Additional file 4 of The low-copy nuclear gene Agt1 as a novel DNA barcoding marker for Bromeliaceae

description: Additional file 4. Supplementary_Material_S4_Agt1_Cloning.
DOI: 10.6084/m9.figshare.11979318
title: Additional file 5 of The low-copy nuclear gene Agt1 as a novel DNA barcoding marker for Bromeliaceae

description: Additional file 5. Supplementary_Material_S5_Agt1_exonIV_alignment.
DOI: 10.6084/m9.figshare.11979318.v1
title: Additional file 5 of The low-copy nuclear gene Agt1 as a novel DNA barcoding marker for Bromeliaceae

description: Additional file 5. Supplementary_Material_S5_Agt1_exonIV_alignment.
DOI: 10.6084/m9.figshare.11979285.v3
title: Additional file 1 of The low-copy nuclear gene Agt1 as a novel DNA barcoding marker for Bromeliaceae

description: Additional file 1. Supplementary_Table_S1_Plant_Material.
DOI: 10.6084/m9.figshare.13317001.v1
title: Additional file 2 of Copy number gain of pro-inflammatory genes in patients with HBV-related acute-on-chronic liver failure

description: Additional file 2. Basic information of the participants used in this study.
DOI: 10.6084/m9.figshare.11979324
title: Additional file 6 of The low-copy nuclear gene Agt1 as a novel DNA barcoding marker for Bromeliaceae

description: Additional file 6. Supplementary_Material_S6_matK_alignment.
DOI: 10.6084/m9.figshare.11979285
title: Additional file 1 of The low-copy nuclear gene Agt1 as a novel DNA barcoding marker for Bromeliaceae

description: Additional file 1. Supplementary_Table_S1_Plant_Material.
DOI: 10.6084/m9.figshare.13317001
title: Additional file 2 of Copy number gain of pro-inflammatory genes in patients with HBV-related acute-on-chronic liver failure

description: Additional file 2. Basic information of the participants used in this study.
DOI: 10.6084/m9.figshare.11979324.v1
title: Additional file 6 of The low-copy nuclear gene Agt1 as a novel DNA barcoding marker for Bromeliaceae

description: Additional file 6. Supplementary_Material_S6_matK_alignment.
DOI: 10.6084/m9.figshare.13317004
title: Additional file 3 of Copy number gain of pro-inflammatory genes in patients with HBV-related acute-on-chronic liver failure

description: Additional file 3. Results of merged CNVs predicted by Birdseye and PennCNV.
DOI: 10.6084/m9.figshare.13317004.v1
title: Additional file 3 of Copy number gain of pro-inflammatory genes in patients with HBV-related acute-on-chronic liver failure

description: Additional file 3. Results of merged CNVs predicted by Birdseye and PennCNV.
DOI: 10.6084/m9.figshare.13317062
title: Additional file 1 of Penicillium janthinellum NCIM1366 shows improved biomass hydrolysis and a larger number of CAZymes with higher induction levels over Trichoderma reesei RUT-C30

description: Additional file 1. Proteins identified from the induced and uninduced secretome of T. reesei RUTC30.
DOI: 10.6084/m9.figshare.13317065
title: Additional file 2 of Penicillium janthinellum NCIM1366 shows improved biomass hydrolysis and a larger number of CAZymes with higher induction levels over Trichoderma reesei RUT-C30

description: Additional file 2. Proteins identified from the induced and uninduced secretome of P. janthinellum NCIM 1366.
DOI: 10.6084/m9.figshare.13317062.v1
title: Additional file 1 of Penicillium janthinellum NCIM1366 shows improved biomass hydrolysis and a larger number of CAZymes with higher induction levels over Trichoderma reesei RUT-C30

description: Additional file 1. Proteins identified from the induced and uninduced secretome of T. reesei RUTC30.
DOI: 10.6084/m9.figshare.13317065.v1
title: Additional file 2 of Penicillium janthinellum NCIM1366 shows improved biomass hydrolysis and a larger number of CAZymes with higher induction levels over Trichoderma reesei RUT-C30

description: Additional file 2. Proteins identified from the induced and uninduced secretome of P. janthinellum NCIM 1366.
DOI: 10.25403/upresearchdata.13303496
title: Determinants of CEO Remuneration, for JSE Listed Financial Services Organisations

description: Dataset containing Organisation Size, Organisation Performance and CEO Remuneration data.
DOI: 10.25403/upresearchdata.13303496.v1
title: Determinants of CEO Remuneration, for JSE Listed Financial Services Organisations

description: Dataset containing Organisation Size, Organisation Performance and CEO Remuneration data.
DOI: 10.6084/m9.figshare.12292841
title: P. xanthii genome project

description: P. xanthii genome project
DOI: 10.25403/upresearchdata.13288703
title: Financial performance of Johannesburg Securities Exchange (JSE) Broad-Based Black Economic Empowered (B-BBEE) compliant companies over a ten-year period.

description: This dataset explains Empowerdex most empowered companies and the publication of B-BBEE scores.
DOI: 10.25403/upresearchdata.13288703.v1
title: Financial performance of Johannesburg Securities Exchange (JSE) Broad-Based Black Economic Empowered (B-BBEE) compliant companies over a ten-year period.

description: This dataset explains Empowerdex most empowered companies and the publication of B-BBEE scores.
DOI: 10.21227/syte-pj73
title: Coronavirus (COVID-19) Geo-tagged Tweets Dataset

description: This dataset contains IDs and sentiment scores of the geo-tagged tweets related to the COVID-19 pandemic. The tweets are captured by an on-going project deployed at https://live.rlamsal.com.np. The model monitors the real-time Twitter feed for coronavirus-related tweets using 90+ different keywords and hashtags that are commonly used while referencing the pandemic. Complying with Twitter's content redistribution policy, only the tweet IDs are shared. You can re-construct the dataset by hydrating these IDs. The tweet IDs in this dataset belong to the tweets tweeted providing an exact location.The paper associated with this dataset is available here: Design and analysis of a large-scale COVID-19 tweets dataset-------------------------------------Related datasets: (a) Coronavirus (COVID-19) Tweets Sentiment Trend (Global)(b) Tweets Originating from India During COVID-19 Lockdowns-------------------------------------Below is the quick overview of this dataset.— Dataset name: GeoCOV19Tweets Dataset— Number of tweets : 273,017 tweets— Coverage : Global— Language : English (EN)— Dataset usage terms : By using this dataset, you agree to (i) use the content of this dataset and the data generated from the content of this dataset for non-commercial research only, (ii) remain in compliance with Twitter's Developer Policy and (iii) cite the following paper:Lamsal, R. Design and analysis of a large-scale COVID-19 tweets dataset. Applied Intelligence (2020). https://doi.org/10.1007/s10489-020-02029-z— Primary dataset : Coronavirus (COVID-19) Tweets Dataset (COV19Tweets Dataset)— Dataset updates : Everyday— Active keywords and hashtags: keywords.tsvPlease visit this page (primary dataset) for details regarding the collection date and time (and other notes) of each CSV file present in this dataset.
DOI: 10.21227/vfbk-6325
title: 2021 IEEE GRSS Data Fusion Contest Track DSE

description: The detection of settlements without electricity challenge track (Track DSE) of the 2021 IEEE GRSS Data Fusion Contest, organized by the Image Analysis and Data Fusion Technical Committee (IADF TC) of the IEEE Geoscience and Remote Sensing Society (GRSS), Hewlett Packard Enterprise, SolarAid, and Data Science Experts, aims to promote research in automatic detection of human settlements deprived of access to electricity using multimodal and multitemporal remote sensing data. The task of Track DSE is to detect human settlements that do not have access to electricity using multimodal and multitemporal remote sensing data. Participants are required to submit binary classification maps and the performance will be evaluated using F1 score.
DOI: 10.5281/zenodo.4301332
title: The influence of thin as compared to thick peri-implant soft tissues on esthetic outcomes. A systematic review and meta-analysis.

description: Dataset for all analyses in the paper.
DOI: 10.5281/zenodo.4301331
title: The influence of thin as compared to thick peri-implant soft tissues on esthetic outcomes. A systematic review and meta-analysis.

description: Dataset for all analyses in the paper.
DOI: 10.6084/m9.figshare.13317116
title: Stress, Dyadic Coping, and Marital Satisfaction of 118 Dual Earner Couples in Indonesia

description: Data in dataset was collected from 118 dual-earner couples in Indonesia, which took place June to December 2019 and was approved by the Committee on Research Ethics at Faculty of Psychology, Universitas Indonesia (No: 521/F.Psi.Komite Etik/PDP.04.00/2019). All measures were translated from English into Bahasa Indonesia by an Indonesian psychology lecturer who is fluent in both English and Bahasa Indonesia. Following this initial procedure, the translated versions were back-translated to English by other lecturer who is fluent in both languages. External stress was measured with the Multidimensional Stress Questionnaire for Couples (MSQ-C;Bodenmann et al., 2007); Marital satisfaction was measured with Couple Satisfaction Index (CSI;Funk & Rogge, 2007); DC was measured with the Dyadic Coping Inventory (DCI; Bodenmann, 2008; Randall et al., 2016), for the purpose of this study only we use 14 items that examines the following: perceived partner’s emotion and problem focused supportive DC; emotion and problem focused common DC; perceived partner’s stress communication. Average scores were calculated for further analysis.
DOI: 10.5281/zenodo.4300247
title: test data for crustal architecture

description: test data for crustal architecture
DOI: 10.5281/zenodo.4300246
title: test data for crustal architecture

description: test data for crustal architecture
DOI: 10.25403/upresearchdata.13286792
title: Financial performance of Johannesburg Securities Exchange (JSE) Broad-Based Black Economic Empowered (B-BBEE) compliant companies over a ten-year period: empowerdex B-BBEE Scores (2010 - 2019)

description: <br>This dataset explains publicly obtained data scores from the Empowerdex most empowered companies from 2010-2019<br><br>
DOI: 10.25403/upresearchdata.13286792.v1
title: Financial performance of Johannesburg Securities Exchange (JSE) Broad-Based Black Economic Empowered (B-BBEE) compliant companies over a ten-year period: empowerdex B-BBEE Scores (2010 - 2019)

description: <br>This dataset explains publicly obtained data scores from the Empowerdex most empowered companies from 2010-2019<br><br>
DOI: 10.21227/g9hq-5f94
title: EEG dataset of 7-day Motor Imagery BCI

description: In this dataset, we performed a seven-day motor imagery (MI) based BCI experiment without feedback training on 20 healthy subjects. The MI tasks include left hand, right hand, feet and idle task.
DOI: 10.11577/1726093
title: Ultrafast structural response to charge redistribution within a photosinthetic reaction centre

description: This data set contains stream files, difference maps and SVD maps obtained from data processing of time-resolved serial femtosecond crystallography measurements performed at LCLS XFEL, used to construct the images and perform the analysis published in the paper "Ultrafast structural response to charge redistribution within a photosinthetic reaction centre". Two (2) time points plus a dark state from 2015 ('a' label) as well as five (5) time points plus a dark state from 2016 ('b' label) are provided.
DOI: 10.25403/upresearchdata.13286885
title: Financial performance of Johannesburg Securities Exchange (JSE) Broad-Based Black Economic Empowered (B-BBEE) compliant companies over a ten-year period: financial Models and Graphs

description: This dataset views financial models for the portfolio and eight selected companies.
DOI: 10.25403/upresearchdata.13286885.v1
title: Financial performance of Johannesburg Securities Exchange (JSE) Broad-Based Black Economic Empowered (B-BBEE) compliant companies over a ten-year period: financial Models and Graphs

description: This dataset views financial models for the portfolio and eight selected companies.
DOI: 10.21227/p4wq-zn46
title: EEG dataset of 7-day Motor Imagery BCI

description: In this dataset, we performed a seven-day motor imagery (MI) based BCI experiment without feedback training on 20 healthy subjects. The MI tasks include left hand, right hand, feet and idle task.
DOI: 10.21227/d02s-0j60
title: EEG dataset of 7-day Motor Imagery BCI

description: In this dataset, we performed a seven-day motor imagery (MI) based BCI experiment without feedback training on 20 healthy subjects. The MI tasks include left hand, right hand, feet and idle task.
DOI: 10.6084/m9.figshare.13218755.v1
title: SOMEF_Extension

description: The dataset of using on SOMEF_Extension, which is a repository classifier.
DOI: 10.6084/m9.figshare.13065986.v3
title: Gastric cancer lymph node data set

description: This is a dataset of pathological lymph nodes for gastric cancer. It can be used to test a gastric cancer lymph node metastasis detection model proposed in "Predicting gastric cancer outcome from resected lymph node histopathology images using deep learning".<br>
DOI: 10.6084/m9.figshare.13317290
title: Supplementary Material for: Repeatability of Commonly Used Speech and Language Features for Clinical Applications

description: <b><i>Introduction:</i></b> Changes in speech have the potential to provide important information on the diagnosis and progression of various neurological diseases. Many researchers have relied on open-source speech features to develop algorithms for measuring speech changes in clinical populations as they are convenient and easy to use. However, the repeatability of open-source features in the context of neurological diseases has not been studied. <b><i>Methods:</i></b> We used a longitudinal sample of healthy controls, individuals with amyotrophic lateral sclerosis, and individuals with suspected frontotemporal dementia, and we evaluated the repeatability of acoustic and language features separately on these 3 data sets. <b><i>Results:</i></b> Repeatability was evaluated using intraclass correlation (ICC) and the within-subjects coefficient of variation (WSCV). In 3 sets of tasks, the median ICC were between 0.02 and 0.55, and the median WSCV were between 29 and 79%. <b><i>Conclusion:</i></b> Our results demonstrate that the repeatability of speech features extracted using open-source tool kits is low. Researchers should exercise caution when developing digital health models with open-source speech features. We provide a detailed summary of feature-by-feature repeatability results (ICC, WSCV, SE of measurement, limits of agreement for WSCV, and minimal detectable change) in the online supplementary material so that researchers may incorporate repeatability information into the models they develop.
DOI: 10.6084/m9.figshare.13317290.v1
title: Supplementary Material for: Repeatability of Commonly Used Speech and Language Features for Clinical Applications

description: <b><i>Introduction:</i></b> Changes in speech have the potential to provide important information on the diagnosis and progression of various neurological diseases. Many researchers have relied on open-source speech features to develop algorithms for measuring speech changes in clinical populations as they are convenient and easy to use. However, the repeatability of open-source features in the context of neurological diseases has not been studied. <b><i>Methods:</i></b> We used a longitudinal sample of healthy controls, individuals with amyotrophic lateral sclerosis, and individuals with suspected frontotemporal dementia, and we evaluated the repeatability of acoustic and language features separately on these 3 data sets. <b><i>Results:</i></b> Repeatability was evaluated using intraclass correlation (ICC) and the within-subjects coefficient of variation (WSCV). In 3 sets of tasks, the median ICC were between 0.02 and 0.55, and the median WSCV were between 29 and 79%. <b><i>Conclusion:</i></b> Our results demonstrate that the repeatability of speech features extracted using open-source tool kits is low. Researchers should exercise caution when developing digital health models with open-source speech features. We provide a detailed summary of feature-by-feature repeatability results (ICC, WSCV, SE of measurement, limits of agreement for WSCV, and minimal detectable change) in the online supplementary material so that researchers may incorporate repeatability information into the models they develop.
DOI: 10.6084/m9.figshare.13317278
title: Supplementary Material for: Optic Nerve Sheath Diameter in Acute Liver Failure: A Prospective Cohort Study

description: <b><i>Introduction:</i></b> Acute liver failure (ALF) is a rare disease that may lead to cerebral edema and death. An increased optic nerve sheath diameter (ONSD) may reflect an early increase in intracranial pressure. We assessed the feasibility and safety of the ONSD measurement and its association with outcomes in patients with ALF. <b><i>Methods:</i></b> This was an open-label prospective cohort study including adult patients with ALF admitted to a liver-specialized intensive care unit (ICU) in an academic center between October 2018 and February 2020 (among 24): 20 as intention-to-treat and 17 as per-protocol analyses. The ONSD measurement (primary exposure) used an ultrasound transducer (3 determinations on each eye per patient). The primary outcome was hospital mortality. <b><i>Results:</i></b> Among the 20 patients, 11 (55.0%) were females and the mean age was 45 ± 16 years. On the day of ONSD measurement (median 32.4 h post-ICU admission; IQR 19.8–59.8): 8 patients (40.0%) were in a coma, the mean international normalized ratio (INR) was 3.3 ± 1.4, median bilirubin was 12.3 mg/dL (IQR 4.7–24.5), mean ammonia was 163 ± 101 µmol/L, and mean SOFA score was 11 ± 5. The mean bilateral ONSD was 5.6 ± 0.7 mm, with a very good correlation between right and left eyes (Pearson’s <i>r</i> = 0.90). Ten (50.0%) patients were transplanted and 13 (65.0%) patients survived the hospital stay (all with a 2-month extended Glasgow Outcome Scale of 8). The mean ONSD was significantly higher for hospital non-survivors than survivors both in the intention-to-treat (6.2 vs. 5.3 mm; <i>p</i> = 0.004) and per-protocol (6.2 vs. 5.2 mm; <i>p</i> = 0.004) analyses. No adverse effects from ONSD measurements were reported. <b><i>Conclusions:</i></b> In patients with ALF, a higher ONSD was associated with higher hospital mortality. ONSD measurement is feasible and safe and may have prognostic value.