cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26683396
title: Additional file 2 of Tumor mutational burden assessment and standardized bioinformatics approach using custom NGS panels in clinical routine

description: Additional file 2: Fig. S1. TMB score variation according to DNA sample quality and according to sample type (FFPE or frozen) in 10 sample pairs. FFPE = Formalin-Fixed Paraffin-Embedded; TMB = Tumor Mutational Burden; VAF = Variant Allele Frequency. Fig. S2. TMB scores according to the algorithm of the Institut Curie (IC) and FoundationOne® (FO), obtained from the same NGS data of 362 MSS/POLE WT FFPE pan-cancer samples. *** p &lt; 0.001 using Wilcoxon signed-rank test. FFPE = Formalin-Fixed Paraffin-Embedded; MSS = MicroSatellite Stable. Fig. S3. Computational analysis of VAFs correlation with or without UMI processing in FFPE and frozen samples for each patient.
DOI: 10.6084/m9.figshare.26683396.v1
title: Additional file 2 of Tumor mutational burden assessment and standardized bioinformatics approach using custom NGS panels in clinical routine

description: Additional file 2: Fig. S1. TMB score variation according to DNA sample quality and according to sample type (FFPE or frozen) in 10 sample pairs. FFPE = Formalin-Fixed Paraffin-Embedded; TMB = Tumor Mutational Burden; VAF = Variant Allele Frequency. Fig. S2. TMB scores according to the algorithm of the Institut Curie (IC) and FoundationOne® (FO), obtained from the same NGS data of 362 MSS/POLE WT FFPE pan-cancer samples. *** p &lt; 0.001 using Wilcoxon signed-rank test. FFPE = Formalin-Fixed Paraffin-Embedded; MSS = MicroSatellite Stable. Fig. S3. Computational analysis of VAFs correlation with or without UMI processing in FFPE and frozen samples for each patient.
DOI: 10.6084/m9.figshare.26683402
title: Additional file 4 of Tumor mutational burden assessment and standardized bioinformatics approach using custom NGS panels in clinical routine

description: Additional file 4.
DOI: 10.6084/m9.figshare.26683402.v1
title: Additional file 4 of Tumor mutational burden assessment and standardized bioinformatics approach using custom NGS panels in clinical routine

description: Additional file 4.
DOI: 10.15468/dl.3sqx76
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.51997 -32.683645, 148.51997 -32.688136, 148.528954 -32.688136, 148.528954 -32.683645, 148.51997 -32.683645)), ((148.528954 -32.688136, 148.528954 -32.690382, 148.531199 -32.690382, 148.531199 -32.694874, 148.528954 -32.694874, 148.528954 -32.69712, 148.531199 -32.69712, 148.531199 -32.699365, 148.537937 -32.699365, 148.537937 -32.703857, 148.542428 -32.703857, 148.542428 -32.699365, 148.549166 -32.699365, 148.549166 -32.69712, 148.551412 -32.69712, 148.551412 -32.690382, 148.544674 -32.690382, 148.544674 -32.694874, 148.537937 -32.694874, 148.537937 -32.688136, 148.528954 -32.688136)), ((148.528954 -32.69712, 148.522216 -32.69712, 148.522216 -32.699365, 148.528954 -32.699365, 148.528954 -32.69712)), ((148.522216 -32.69712, 148.522216 -32.690382, 148.515479 -32.690382, 148.515479 -32.69712, 148.522216 -32.69712)), ((148.551412 -32.69712, 148.551412 -32.699365, 148.553657 -32.699365, 148.553657 -32.69712, 148.551412 -32.69712)), ((148.553657 -32.699365, 148.553657 -32.703857, 148.551412 -32.703857, 148.551412 -32.706103, 148.558149 -32.706103, 148.558149 -32.703857, 148.560395 -32.703857, 148.560395 -32.699365, 148.553657 -32.699365)), ((148.553657 -32.69712, 148.567132 -32.69712, 148.567132 -32.690382, 148.564886 -32.690382, 148.564886 -32.694874, 148.553657 -32.694874, 148.553657 -32.69712)), ((148.564886 -32.690382, 148.564886 -32.688136, 148.558149 -32.688136, 148.558149 -32.690382, 148.564886 -32.690382)))"
 ]
}

 The dataset includes 122 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067405-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26683429
title: Additional file 2 of Resistance of HNSCC cell models to pan-FGFR inhibition depends on the EMT phenotype associating with clinical outcome

description: Supplementary material 2.
DOI: 10.6084/m9.figshare.26683429.v1
title: Additional file 2 of Resistance of HNSCC cell models to pan-FGFR inhibition depends on the EMT phenotype associating with clinical outcome

description: Supplementary material 2.
DOI: 10.6084/m9.figshare.26683432
title: Additional file 3 of Resistance of HNSCC cell models to pan-FGFR inhibition depends on the EMT phenotype associating with clinical outcome

description: Supplementary material 3.
DOI: 10.6084/m9.figshare.26683432.v1
title: Additional file 3 of Resistance of HNSCC cell models to pan-FGFR inhibition depends on the EMT phenotype associating with clinical outcome

description: Supplementary material 3.
DOI: 10.6084/m9.figshare.26683435
title: Additional file 4 of Resistance of HNSCC cell models to pan-FGFR inhibition depends on the EMT phenotype associating with clinical outcome

description: Supplementary material 4.
DOI: 10.6084/m9.figshare.26683435.v1
title: Additional file 4 of Resistance of HNSCC cell models to pan-FGFR inhibition depends on the EMT phenotype associating with clinical outcome

description: Supplementary material 4.
DOI: 10.6084/m9.figshare.26683486
title: Additional file 3 of A network-based drug prioritization and combination analysis for the MEK5/ERK5 pathway in breast cancer

description: Additional file 3: Supplementary Table 1. List of genes associated with the MEK5/ERK5 signalling pathway and enriched in human breast tissue. These genes were obtained after merging evidence from the DisGeNet and the Human Proteome Atlas databases. Supplementary Table 2. Topology analysis of plant polyphenols target MEK5/ERK5 pathway networks. Disease association information was extracted from the DisGeNet database with only genes curated in breast cancer selected. Nodes with low betweenness centrality scores (betweenness = 0) were removed. Supplementary Table 3. Pathway enrichment analysis results based on KEGG, GO, and DisGeNet showing the enriched terms in the nodes of subnetworks of each plant polyphenol. Supplementary Table 4. Results of drug-target subnetwork topological analysis showing the number of proteins (nodes) and their interactions (edges) at different doses. Supplementary Table 5. List of enriched pathways in the set of common genes between plant polyphenol and breast cancer target subnetworks. Supplementary Table 6. Differences between the network topology and overall average network topology for each plant polyphenol target network. Supplementary Table 7. List of drugs prioritized as combination candidates with target network synergistic effects. Different dosages of each drug were used in the simulation and for each dose the first 10 best scored drugs are provided. The network scores as well as the number of genes in common between drug-deregulated genes and the background network are shown. Supplementary Table 8. List of drugs prioritized as combination candidates with target network enhancer effects. Different dosages of each drug were used in the simulation and for each dose, the first 10 best scored drugs are provided. The network scores as well as the number of genes in common between drug-deregulated genes and the background network are shown.
DOI: 10.6084/m9.figshare.26683486.v1
title: Additional file 3 of A network-based drug prioritization and combination analysis for the MEK5/ERK5 pathway in breast cancer

description: Additional file 3: Supplementary Table 1. List of genes associated with the MEK5/ERK5 signalling pathway and enriched in human breast tissue. These genes were obtained after merging evidence from the DisGeNet and the Human Proteome Atlas databases. Supplementary Table 2. Topology analysis of plant polyphenols target MEK5/ERK5 pathway networks. Disease association information was extracted from the DisGeNet database with only genes curated in breast cancer selected. Nodes with low betweenness centrality scores (betweenness = 0) were removed. Supplementary Table 3. Pathway enrichment analysis results based on KEGG, GO, and DisGeNet showing the enriched terms in the nodes of subnetworks of each plant polyphenol. Supplementary Table 4. Results of drug-target subnetwork topological analysis showing the number of proteins (nodes) and their interactions (edges) at different doses. Supplementary Table 5. List of enriched pathways in the set of common genes between plant polyphenol and breast cancer target subnetworks. Supplementary Table 6. Differences between the network topology and overall average network topology for each plant polyphenol target network. Supplementary Table 7. List of drugs prioritized as combination candidates with target network synergistic effects. Different dosages of each drug were used in the simulation and for each dose the first 10 best scored drugs are provided. The network scores as well as the number of genes in common between drug-deregulated genes and the background network are shown. Supplementary Table 8. List of drugs prioritized as combination candidates with target network enhancer effects. Different dosages of each drug were used in the simulation and for each dose, the first 10 best scored drugs are provided. The network scores as well as the number of genes in common between drug-deregulated genes and the background network are shown.
DOI: 10.15468/dl.aegu7w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.484038 -32.694874, 148.484038 -32.706103, 148.481792 -32.706103, 148.481792 -32.710594, 148.488529 -32.710594, 148.488529 -32.703857, 148.495267 -32.703857, 148.495267 -32.706103, 148.497512 -32.706103, 148.497512 -32.710594, 148.495267 -32.710594, 148.495267 -32.71284, 148.497512 -32.71284, 148.497512 -32.715086, 148.499758 -32.715086, 148.499758 -32.706103, 148.50425 -32.706103, 148.50425 -32.703857, 148.499758 -32.703857, 148.499758 -32.699365, 148.497512 -32.699365, 148.497512 -32.69712, 148.495267 -32.69712, 148.495267 -32.694874, 148.484038 -32.694874))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067406-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26683546
title: Additional file 6 of A proteomic classifier panel for early screening of colorectal cancer: a case control study

description: Additional file 6: Table S1. Demographic data of all the patients enrolled in MRM experiments.
DOI: 10.6084/m9.figshare.26683546.v1
title: Additional file 6 of A proteomic classifier panel for early screening of colorectal cancer: a case control study

description: Additional file 6: Table S1. Demographic data of all the patients enrolled in MRM experiments.
DOI: 10.6084/m9.figshare.26683549
title: Additional file 7 of A proteomic classifier panel for early screening of colorectal cancer: a case control study

description: Additional file 7: Table S2. Protein expression data from DDA experiments.
DOI: 10.15468/dl.p2qsrv
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-5.94900914697403 32.52168649992253,-4.036827843857887 32.52168649992253,-4.036827843857887 34.43386780303867,-5.94900914697403 34.43386780303867,-5.94900914697403 32.52168649992253))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Alectoris barbara (Bonnaterre, 1790)"
 ]
}

 The dataset's 2 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262159-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4u3jms
title: Occurrence Download

description: A dataset containing 3632 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tithonia tubaeformis (Jacq.) Cass."
 ]
}

 The dataset includes 3632 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230313-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mm4auz
title: Occurrence Download

description: A dataset containing 247 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxytropis altaica (Pall.) Pers."
 ]
}

 The dataset includes 247 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218023-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.am9uvf
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glottiphyllum album L.Bolus"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230315-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eerhc3
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong, Macao, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rosa persetosa Rolfe"
 ]
}

 The dataset includes 72 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230345-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zh5uxh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Porifera",
 "DatasetKey is La Planète revisitée - Corse 2019-2022-La Planète Revisitée Corse 2019 : prospections Alta Rocca et Tartagine",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0222451-230224095556074/datasets/export for details.
DOI: 10.15468/dl.drxzgf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Porifera",
 "DatasetKey is Système d'Information sur la Nature et les Paysages d'Ile de France - Inventaire éclair de Natureparif 2017",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0222445-230224095556074/datasets/export for details.
DOI: 10.15468/dl.txtjgu
title: Occurrence Download

description: A dataset containing 2092 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Alces alces (Linnaeus, 1758), Sus scrofa Linnaeus, 1758)",
 "HasCoordinate is one of (true)",
 "Country is one of (Ukraine)"
 ]
}

 The dataset includes 2092 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230366-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2vm8a8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Platyhelminthes",
 "DatasetKey is MODIRISK: Monitoring of Mosquito Vectors of Disease (inventory)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0211289-230224095556074/datasets/export for details.
DOI: 10.15468/dl.jbz6qd
title: Occurrence Download

description: A dataset containing 491 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Platyhelminthes",
 "DatasetKey is Collections and observation data National Museum of Natural History Luxembourg",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 491 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0211291-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p4ujem
title: Occurrence Download

description: A dataset containing 3925 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-72.57 6.27,-72.15 6.27,-72.15 7.17,-72.57 7.17,-72.7612 7.15712,-72.74289 6.27047,-72.57 6.27))",
 "TaxonKey is Espeletia Mutis ex Humb. & Bonpl."
 ]
}

 The dataset includes 3925 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230378-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t8j4p2
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glottiphyllum oligocarpum L.Bolus"
 ]
}

 The dataset includes 21 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230337-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ew9v5p
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthropoda",
 "DatasetKey is Lindau im Bodensee",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 19 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217974-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xb9vu3
title: Occurrence Download

description: A dataset containing 836 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong, Macao, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rosa davurica Pall."
 ]
}

 The dataset includes 836 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230367-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.77af48
title: Occurrence Download

description: A dataset containing 2157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Platyhelminthes",
 "DatasetKey is Artportalen (Swedish Species Observation System)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 2157 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0211293-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wcxmve
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium gigantium Sleumer"
 ]
}

 The dataset includes 76 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0244429-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uhza36
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crotalus transversus Taylor, 1944"
 ]
}

 The dataset includes 86 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0244430-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9tnkxc
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mostacillastrum stenophyllum (Gillies ex Hook. & Arn.) O.E.Schulz"
 ]
}

 The dataset includes 120 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043843-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eeam78
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium gilense Ósk."
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0244432-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83vjzu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Platyhelminthes",
 "DatasetKey is Programmes de connaissance sur les communautés d'invertébrés en Occitanie - Données invertébrés produites par l'OPIE",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0211251-230224095556074/datasets/export for details.
DOI: 10.15468/dl.v57ged
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jenmaniella jenmanii (Engl.) P.Royen"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256699-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.etnqsd
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Platyhelminthes",
 "DatasetKey is naturgucker",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 145 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0211242-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.