cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0216554.10fu
title: SH0216554.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.3535/jq3-s2f-ck0
title: Epilobium ciliatum Raf.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/p6m-r15-d2a
title: Epilobium ciliatum Raf.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15156/bio/sh0216555.10fu
title: SH0216555.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.3535/0dk-8yz-f6b
title: Viola tricolor L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15468/dl.h3cunt
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Garcinia keenania Pierre"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001196-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j2tnd5
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neuontobotrys amplexicaulis (Kuntze) Al-Shehbaz"
 ]
}

 The dataset includes 21 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063834-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pz8p3d
title: Occurrence Download

description: A dataset containing 15095 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dianthus caryophyllus L."
 ]
}

 The dataset includes 15095 records from 250 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0343733-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qwpasz
title: Occurrence Download

description: A dataset containing 95017 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ramphastos sulfuratus R.Lesson, 1830"
 ]
}

 The dataset includes 95017 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009595-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jq72e5
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neuontobotrys intricatissima (Phil.) Al-Shehbaz"
 ]
}

 The dataset includes 28 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063845-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t3awpr
title: Occurrence Download

description: A dataset containing 1090 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-39.05902 14.31899,81.72324 14.31899,81.72324 62.61085,-39.05902 62.61085,-39.05902 14.31899))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Helianthemum canum (L.) Baumg."
 ]
}

 The dataset includes 1090 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0100039-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dtmtry
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-124.30078 -47.42031,-14.69922 -47.42031,-14.69922 -3.57969,-124.30078 -3.57969,-124.30078 -47.42031))",
 "HasCoordinate is true",
 "TaxonKey is Prosopis strombulifera (Lam.) Benth.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 83 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000170-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jvnhtk
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "TaxonKey is Carabus olympiae Sella, 1855"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090773-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qwswy5
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Caragana aurantiaca Koehne"
 ]
}

 The dataset includes 101 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063843-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eo9hge
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "TaxonKey is Brachymyrmex depilis Emery, 1893",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 18 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000176-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngmmsu
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amphipyra micans Lederer, 1857"
 ]
}

 The dataset includes 22 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090777-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v5qbdd
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neuontobotrys linearifolia (Kuntze) Al-Shehbaz"
 ]
}

 The dataset includes 64 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063847-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oiy2ki
title: Occurrence Download

description: A dataset listing the 6144 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 {
 "or" : [
 "Issue is Coordinate out of range",
 "Issue is Coordinate invalid",
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Coordinate reprojected",
 "Issue is Coordinate reprojection failed",
 "Issue is Coordinate reprojection suspicious",
 "Issue is Coordinate accuracy invalid",
 "Issue is Coordinate precision invalid",
 "Issue is Coordinate uncertainty meters invalid",
 "Issue is Coordinate precision/uncertainty mismatch",
 "Issue is Taxon match none",
 "Issue is Taxon match fuzzy"
 ]
 },
 "Geometry POLYGON((-53.28369 -33.68778,-44.71436 -33.9069,-43.50586 -25.16517,-50.00977 -24.68695,-53.28369 -33.68778))",
 {
 "or" : [
 "DatasetKey is Cetacean distribution in the South Atlantic and South Pacific Ocean (AR-OBIS)",
 "DatasetKey is NMNH Extant Specimen Records (USNM, US)",
 "DatasetKey is iNaturalist Research-grade Observations",
 "DatasetKey is CARBOM cruise 2013 flow cytometry sorted phytoplankton",
 "DatasetKey is Occurrences in SinBIOTA",
 "DatasetKey is Paleobiology Database",
 "DatasetKey is UF Florida Museum of Natural History Mammals",
 "DatasetKey is Geographically tagged INSDC sequences",
 "DatasetKey is Louisiana State University, Bernard Lowy Mycological Herbarium",
 "DatasetKey is Museum of Comparative Zoology, Harvard University"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 6144 records were derived from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009591-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ygwf9u
title: Occurrence Download

description: A dataset containing 324220 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((260.90023 19.67377,260.732 19.58107,260.65235 19.47052,260.6345 19.31328,260.65716 19.21852,260.91053 19.1684,261.04923 19.15466,261.16184 19.23157,261.20235 19.39156,261.22158 19.48631,261.15841 19.59961,260.96203 19.66621,260.90023 19.67377))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is CC0 1.0",
 "OccurrenceStatus is Present",
 "Year 2015-2020"
 ]
}

 The dataset includes 324220 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0109651-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.raweth
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neuontobotrys choiquensis (Romanczuk) Al-Shehbaz"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063839-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b9wbkj
title: Occurrence Download

description: A dataset containing 887 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ribautiana ulmi (Linnaeus, 1758))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 887 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041864-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wremjq
title: Occurrence Download

description: A dataset containing 383 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Litsea glaucescens Kunth",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 383 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010867-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aevjks
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Amphiodia violacea (Lütken, 1856)"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0109656-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ms7wwd
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Appendicula biumbonata Schltr."
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012054-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.slhohq
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-120.83313 34.23179,-118.11401 33.66401,-117.87231 34.79035,-117.95471 36.70102,-119.729 38.3089,-122.35474 38.11814,-122.13501 36.07929,-120.83313 34.23179))",
 "DatasetKey is KUBI Herpetology Collection",
 {
 "or" : [
 "TaxonKey is Gambelia sila (Stejneger, 1890)",
 "TaxonKey is Gambelia wislizenii (Baird & Girard, 1852)",
 "TaxonKey is Gambelia wislizenii wislizenii",
 "TaxonKey is Gambelia wislizenii silus (Stejneger, 1890)",
 "TaxonKey is Crotaphytus Holbrook, 1842",
 "TaxonKey is Gambelia Baird, 1859"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 2 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010872-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v9sc88
title: Occurrence Download

description: A dataset containing 310 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Salix triandra subsp. discolor (Wimm. & Grab.) Arcang."
 ]
}

 The dataset includes 310 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130182-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xvys65
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Gelidiopsis tenuis Setchell & N.L.Gardner"
 ]
}

 The dataset includes 122 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063855-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2icd4
title: Occurrence Download

description: A dataset containing 142238 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Invertebrate Zoology Division, Yale Peabody Museum"
 ]
}

 The dataset includes 142238 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015993-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.88euht
title: Occurrence Download

description: A dataset containing 38682056 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "DatasetKey is Observation.org, Nature data from around the World"
 ]
}

 The dataset includes 38682056 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0146604-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6vjnpb
title: Occurrence Download

description: A dataset containing 3012 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Gelidiella acerosa (Forssk.) Feldmann & G.Hamel"
 ]
}

 The dataset includes 3012 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063838-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.o83pjc
title: Occurrence Download

description: A dataset containing 72636 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((2.76855 12.59033,2.19727 8.28369,1.62598 5.60303,3.2959 5.07568,4.83398 3.80127,7.69043 3.71338,9.00879 4.32861,10.67871 5.55908,12.65625 6.43799,14.01855 9.33838,15.9082 11.40381,15.29297 13.99658,12.2168 14.3042,8.26172 14.12842,4.92188 14.87549,2.76855 12.59033))",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 72636 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016006-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jkur5d
title: Occurrence Download

description: A dataset containing 379063 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Australia",
 "GadmGid is AUS.5_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Wallabia bicolor (Desmarest, 1804)"
 ]
}

 The dataset includes 379063 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0109657-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.owsjty
title: Occurrence Download

description: A dataset containing 12098872 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Mammalia",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12098872 records from 2259 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008700-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48436/6kpr2-2ah89
title: Data for binary classification experiments

description: Research context

This zip archive contains all the data and scripts which are neccessary to reproduce the results of the following paper,  co-authored by Markus Kattenbeck, Ioannis Giannopoulos, Negar Alinaghi, Antonia Golab, and Daniel R. Montello:

Predicting spatial familiarity by exploiting head and eye movements during pedestrian navigation in the real world

This paper will be published in Springer Nature Scientific Reports.

File overview

The structure of the archive is the following:



Folder "01_data" contains all the data files needed and a readme file describing the structure of each of these data files. These data files are:



lsp.csv [contains demographic data about participants]

matched_gaze_imu.csv [contains the segmented behavioral data, i.e. both gaze features and imu features]

matched_gaze_imu_feature_description.pdf [contains a description of the features contained in matched_gaze_imu.csv]

walking_dates.csv [contains an overview on which date participants walked the familiar and unfamiliar routes]

users_polygons.csv [contains one or more polygons per participant in which they are familiar]

polygons_markers.csv [contains locations of POIs per polygon for which participants reported to be familiar with]

user_routes.csv [containes the route participants provided between a randomly selected pair of POIs they have provided for a given polygon]



Folder "02_scripts" contains the data analysis scripts; they are organized in two subfolders:



01_ml_scripts: these are the scripts for the XGBoost classification; they are organized as two python files in which further instructions for use are given.



80_20_code.py is the python file which runs the ML experiments using an 80/20 train/test split

L5O4T_code.py is the python file which runs the ML experiments leaving the full data of five different participants per condition as unseen data for the test.

requirements.txt states the used Python package versions



02_r_scripts: 



cleaned_script.Rmd This is an R notebook which can be easily opened in R-Studio and provides the analysis scripts for the descriptive statistics presented in the paper. 

package_versions.txt states the used R package versions






Licenses

The code is licensed under MIT, the data is licensed under CC-BY.