cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/rh35my7tyt
title: The social organization of Oecophylla smaragdina (Hymenoptera: Formicidae) colonies and their functional activity

description: The dataset and analyses conducted provided valuable findings on the existence of five workers distinct sub-caste in the Asian weaver ant colonies sampled in oil palm plantations and Calamansi lemon trees in Malaysia. 
This does contrast with the classical bimodal worker distribution as major and minor only. We have polymorphic workers presenting a definite multimodal distribution. The major big worker MBW, the major intermediate worker, MIW, the intermediate worker 3 IM3, the intermediate worker 2 IM2 and minor worker MW.
DOI: 10.17632/zhfb8s4zdf
title: Data for: Effect of airway management strategies during resuscitation from out-of-hospital cardiac arrest on clinical outcome: A registry-based analysis

description: SPSS raw data of our matched pair anaysis
DOI: 10.6084/m9.figshare.15088248.v1
title: HHBActivityandWeather

description: Nightly bat echolocations and weather averages.
DOI: 10.6084/m9.figshare.28398444.v1
title: Supplementary Material from Collective escape waves provide a generic defence against different avian predators

description: DATA_2.rar
DOI: 10.17632/k77y7n9yhg
title: Dataset for "A Precision Agriculture Solution for Water Stress Estimation in Hass Avocado Farms in Colombia"

description: This is the dataset for the research article "A Precision Agriculture Solution for Water Stress Estimation in Hass Avocado Farms in Colombia". Here, a year-long weather dataset for a water stress estimation solution is presented. The data corresponds to the test period of four devices installed at an operating Hass avocado farm and includes measurements for 5 variables: air temperature, relative humidity, rain, sunshine duration and wind speed. The data has been aggregating daily as follows: daily average, maximum and minimum for air temperature and relative humidity, daily accumulated rainfall, daily sunshine duration and daily average wind speed. This dataset was created to validate if the proposed device could be used by small and medium-sized farms for water stress event detection. In addition, since it is related to water usage and weather monitoring, it has also been used to assess the device's ability to solve these issues. This dataset has also been made freely available for further research, as there are many potential applications that could improve the agricultural practices for small and medium-sized farms.
DOI: 10.17632/tfk37k3m4z
title: Replication Codes for "Foreign Currency Loans and Credit Risk: Evidence from U.S. Banks"

description: This repository contains the codes to generate all results in the paper "Foreign Currency Loans and Credit Risk: Evidence from U.S. Banks". As the Y-14 corporate loans data set is confidential, we are posting the codes but not the data. Researchers within the Federal Reserve System can apply for access to the Y-14 corporate loans data.
DOI: 10.17632/wh7vfyyyp2
title: Dataset for the paper "Attractor competition enriches cortical dynamics during awakening from anesthesia"
DOI: 10.6084/m9.figshare.28263050.v1
title: Supplementary Material for: Social Life and Communication Skills of School-Age Children with Congenital Hearing Loss Who Received Cochlear Implants at an Advanced Age

description: Introduction: Despite improved hearing, children who receive cochlear implants (CIs) at a later age encounter difficulties in adapting to society, exposing them to psychological and social risks. This study contributes to the conceptualisation of preventive interventions in schools to address potential issues so that these children can play a more active role in society.
Methods: A total of 52 children (aged 3–12 years) who received CIs at 30 months of age were assessed using the Asahide-Shiki Social Adaptive skills test, which evaluates children’s social skills on four domains: (A) language, (B) everyday life, (C) social life, (D) communication.
Results: Overall, the average score of children who receive CIs at a later age was lower than that of their hearing peers. Pre-school children obtained statistically lower scores in all skills. While this general lag in skill development was no longer observed in the lower grades of elementary school, the upper-grade school children presented lower scores than their hearing peers, although only those pertaining to everyday and social life skills were statistically significant. Accordingly, the average scores were distributed in an inverted V shape among age groups.
Conclusion: These results suggest that children who receive CIs at a later age develop their social skills later than their peers with normal hearing in preschool, catch up to their peers in the 1st to 3rd grades, and then lag in the 4th to 6th grades. Accordingly, acquiring age-appropriate social skills in the upper grades remains a challenge for children who obtained CIs at the age of approximately 3, suggesting the need for intervention programs for school-age children even when they do not show significant language acquisition delays.
DOI: 10.6084/m9.figshare.9878582.v1
title: Willow gene family

description: The latest <i>Salix suchowensis</i> genome (version5_2.fa), annotation information (version5_2.gff3), coding sequences (Willow.gene.cds) and protein sequences (Willow.gene.pep).
DOI: 10.17632/4rsz3snvk5
title: Dataset of NGS-Phage display library of nanobodies derived from Indian desert camel (Camelus dromedarius L.)

description: We subjected to NGS methodology a fraction of our previously constructed phage display library (PDL) of nanobody (Nb) clones (Cl) for obtaining the dataset of Nbs NGS reads. This is the first phage display library of Nbs derived from the Indian desert camel and its initial preliminary characterization revealed functional Nbs against diverse Ags from infectious agents. Several Nb clones were isolated by panning against E. coli endotoxin and S. aureus β-hemolysin (an exotoxin), and were deposited, along with the library, in ICAR-Veterinary Type Culture Collection at Hisar (Haryana) (Accession no. VTCCMBA22 to VTCCMBA48). Some of these Nb clones were characterized for biochemical and functional features, and Sanger sequenced (GenBank accession no.: EU861212; KF990215; KF990216; KF990217; GU014816). For NGS, the cryo-preserved transformants library was revived to extract the Nb-encoding VHH (inserts)-pHEN4 (vector) DNA pool. The DNA sample was used for amplifying VHH pool by PCR. The VHH amplicons band was gel-purified and subjected to NGS using Illumina MiSeqTM platform. ‘Nextra XT micro V2 Index’ kit was used for the Nb library DNA sample sequencing, with the adaptors: ‘i7’ (N706: TAGGCATG) and ‘i5’ (S517: GCGTAAGA). The raw data of NGS reads was submitted to NCBI ‘Sequence Reads Archive’ repository. Raw NGS data ‘Read 1’ [Phage lib NGS seqs-ABT-28_S24_L001_R1_001.fastq (1)] and ‘Read 2’ [Phage lib NGS seqs-ABT-28_S24_L001_R2_001.fastq (2)] files were generated by Illumina® MiSeq™ system. Preliminary examination using CLC Genomics Workbench 12.0 revealed 91,073 sequence reads in each file. Quality score ‘Q30’ (1 in 1000 bases incorrect) at 2x150 bp was &gt;80%, i.e., acceptable. A total read count was 182146 (matched= 179591; unmatched=2555), with average read length of 130.33 bases and a total of 23.74 Mb. Of 179591 matched reads, 142004 were paired reads and 37587 broken paired reads. These data can be accessed at SRA RunSelector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA516512 Three consensus contigs were present in the NGS reads. Contig 1 and -2 have CDR1, -2 and -3, whereas contig 3 being of shorter length, has only CDR 1 and -2. The contig 1 CDR1, -2 and -3 are identical to the T. evansi VSG binder Nb clones isolated from the library and sequenced by Sanger’s technique. The contig 2 CDR 1 and -2 are identical and CDR3 highly similar to the LPS-binder Nb clones previously isolated from the library. VHH hallmark amino acids are present in all the contigs. Blastn of contig 1-3 consensus sequences revealed homologies to sequences of Nbs specific to E. coli LPS, Trypanosoma evansi variable surface glycoprotein (VSG), and several other important antigens of veterinary and human pathogens. Anti-LPS Nb clones are highly similar to NGS sequence reads. NGS reads guided the isolation of anti-T. evansi RoTat1.2 VSG Nb clones. This approach could be used for the search of other Nbs and templates for Nb reformatting and Nb-based drug designing.
DOI: 10.6084/m9.figshare.11836584.v1
title: MATLAB Codes from How do conservative backbone curves perturb into forced responses? A Melnikov function analysis

description: Software used for the numerical analyses performed in section 5.
DOI: 10.6084/m9.figshare.26366962.v2
title: Thermal sensitivity of respiration and ROS emission of muscle mitochondria in deer mice

description: We examined thermal effects on mitochondrial function in deer mice (<i>Peromyscus maniculatus</i>). Mitochondrial respiration and ROS emission was measured at 37, 40, and 42°C using both permeabilized fibres and isolated mitochondria from the gastrocnemius muscle. See associated publication for additional details on data and experimental design.
DOI: 10.6084/m9.figshare.4300022.v1
title: LPI_LPR2016data_public.csv

description: Data are available for use in accordance with the data policy: https://livingplanetindex.org/documents/data_agreement.pdf<br><br>Time series of population abundance data for vertebrate species spanning years between 1970 and 2012. These data were used in the Living Planet Report 2016. Confidential records that cannot be shared have been removed from this data set. A beta version of the code used in calculation of the Living Planet Index using this data set can be found here https://github.com/Zoological-Society-of-London/rlpi
DOI: 10.17632/mvvd3dnfyz
title: lendingclub2016Q1-2020Q2

description: Lending Club peer-to-peer loan data from the first quarter of 2016 through the second quarter of 2020.
DOI: 10.6084/m9.figshare.28777229.v1
title: Deformation data for rock containing different fault geometry

description: We conducted triaxial compression tests on rock-like samples containing faults with different geometric complexity. The deformation across the rock surface and local failure are obtained by distributed optical fiber sensing and acoustic emission. These data are all original data of distributed optical fiber sensing and acoustic emission, including some analysis and figures by myself.
DOI: 10.6084/m9.figshare.7883579.v1
title: gVCF_HG01133

description: 1000 Genomes gVCF mapped to hs37d5 for HG01133. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.13158467.v5
title: Reference-grade genome sequence and annotation of Gossypium arboreum (A2)

description: The reference-grade cotton genome assemblies and annotation of <i>Gossypium </i><i>arboreum</i> (A<sub>2</sub>) using Oxford Nanopore sequencing technology.
DOI: 10.6084/m9.figshare.19425992.v1
title: digital rocks for multiscale modeling to predict permeability

description: The carbonate samples were cored from the Southwest oilfield of China and Qinniang mountain outcrop, while the conglomerate samples were taken from the eastern oilfield in the South China Sea. The core plugs and extracted matrix subvolumes were imaged by a nanoVoxel-3502E X-ray three-dimensional (3D) microscope (Sanying Precision Instruments Co., Ltd., China).
DOI: 10.6084/m9.figshare.22691155.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.25246291.v1
title: Business Processes in IT Asset Management Multimedia Event Log

description: The Business Processes in IT Asset Management Multimedia Event Log (Solve4X) dataset is a multimedia dataset for object-centric business process mining in IT asset management (ITAM). It encompasses 121 instances of IT asset management processes and their ground-truth annotations in 36 scripted video scenes. Each scene includes video recording from two angles, a process event log from an ITAM system, human motion tracking data (including pose, location in the room, walking speed and handling height), task mining log data from a web browser and various additional ambient sensor data (e.g., door and shelf openings, distance sensor). We additionally provide ground truth annotations for business process activity segments captured in the video data including segment time and duration, involved humans, IT assets, location and the corresponding business process instance type and ID.
DOI: 10.6084/m9.figshare.28458161.v1
title: <b>Single-nucleosome imaging reveals principles of transient multiscale chromatin reorganization triggered by histone ADP-ribosylation at DNA lesions</b>

description: Timely access to DNA lesions is crucial for genome integrity. This process requires profound remodeling of densely packed chromatin to establish a repair-competent architecture. However, limited resolution has made it impossible to fully understand these remodeling events. Here, combining microirradiation with live-cell multiscale imaging, we report that DNA damage-induced changes in genome packing rely on the conformational behaviour of the chromatin fiber. Immediately after damage, a transient increase in nucleosome mobility switches chromatin from a densely-packed state to a looser conformation, making it accessible to repair. While histone poly-ADP-ribosylation is required to trigger this switch, mono-ADP-ribosylation is sufficient to maintain the open-chromatin state. The removal of these histone marks by the ARH3 hydrolase then leads to chromatin recondensation. Together, our multiscale study of chromatin dynamics establishes a global model: distinct waves of histone ADP-ribosylation control nucleosome mobility, triggering a transient breathing of chromatin, crucial for initiating the DNA damage response.
DOI: 10.17632/m3hryjj7h5
title: Orthographic-semantic consistency effects in lexical decision: What types of neighbors are responsible for the effects?

description: Data and analysis codes to reproduce the results reported in "Orthographic-Semantic Consistency Effects in Lexical Decision: What types of Neighbors are Responsible for the Effects?" authored by Yasushi Hino, Debra Jared and Steve Lupker. In Data Analyses 1,2 and 3, lexical decision latency and accuracy data from English Lexicon Project (Balota, Yap, Cortese, Hutchison, Kessler, Loftus, Neely, Nelson, Simpson & Treiman, 2007) are used and analyzed to examine whether orthographic-semantic consistency effect is observed on lexical decision data. In Experiment, on the other hand, behavioral data are collected in online lexical decision experiment to examine whether the orthographic-semantic consistency effect is observed when the consistency is manipulated based on either addition neighbors or substitution neighbors. In addition, we also provided analysis codes to reproduce the results for Table 16 in the paper as well as the results of Tables and Figures reported in Supplementary Materials.
DOI: 10.17632/sw4dw5nhz8
title: Application of R. Amthauer's test of verbal intelligence structure in the system of speech thinking diagnostics

description: To study the indicators of speech thinking can be used a method, the initial version of which is a test of the structure of intelligence R. Amthauer, developed for younger students EF Zambatsyavichene and modified by LI Peresleni, LF Chuprov. The technique combines different types of verbal tasks and allows you to get an idea of the levels of development of verbal-logical thinking. It consists of four subtests with different orientations. And the subtest is the detection of awareness. 
The task of the subject is to end the sentence with one of the given words, making a logical choice based on inductive thinking, the available stock of knowledge and ideas.
 II subtest - the formation of logical action (classification), the ability to abstract. Qualitative analysis of the results of the tasks provides an opportunity to determine whether the child can be distracted from random and secondary signs, from the usual relationships between objects, about his ability to use such a mental tool as classification.
III subtest - the formation of a logical action "inference by analogy". To perform the tasks of this subtest, the subject must be able to establish logical connections and relationships between subjects.
1V subtest - the formation of generalizing concepts, bringing two concepts under a common category.
When performing the tasks of the first subtest (for example: "The boot always has a lace, buckle, sole, straps, buttons"), the child is asked the question: "Which of the five words fits the given part of the sentence?". If the answer is correct, the question "Why not a shoelace?" (The question is asked in order to clarify the understanding of the meaning of the word "always", which is important for other tasks). After the correct answer the decision is estimated in 1 point. If the answer is wrong, the child is asked to think and give another, correct answer (stimulating help). 0.5 points are awarded for the correct answer after the second attempt
If the answer is incorrect again - 0 points. At the decision of the following tests and the subtest clarifying questions are not asked.
After reading the first task of the second subtest ("Tulip, lily, bean, chamomile, violet"), the child is told that one word out of five is superfluous, it should be deleted, and asked: "Which word should be deleted?". If the answer is correct, the question "Why?". With the correct explanation - a score of 1 point, with a false - 0.5 points. If the answer is incorrect, help is provided similar to that described above. For the correct answer after the second attempt - 0.5 points are awarded.
After presenting the first sample of the third subtest, the child is asked to choose one of the five words written under the dash, which would fit the word "Carnation" as well as the word "vegetable" to the word "cucumber". For the correct answer - 1 point, for the answer after the second attempt - 0.5 points, if the task is not completed - 0 points.
DOI: 10.6084/m9.figshare.13515458.v1
title: R Script

description: R script for paper "True seals achieved global distribution by breaking Bergmann’s rule"
DOI: 10.6084/m9.figshare.25101536.v1
title: city-level subsector industrial and farming water withdrawal intensity dataset, 2015

description: Farming intensity data were water withdrawal per irrigated area, estimated using the latest 2015 total farming irrigation. Industrial intensity data were water withdrawal per industrial output. They were from a point-sourced survey. These are in the sequence of thirty-four province-level administrative units.
DOI: 10.6084/m9.figshare.28507328.v1
title: Adaptive multitask emotion recognition and sentiment analysis IEMOCAP, MELD Datasets

description: These datasets are commonly used for building and training models based on <b>multitask learning</b>, where both emotion recognition and sentiment analysis are jointly optimized. Models developed using these datasets can significantly enhance human-computer interaction by improving the emotional sensitivity of systems.
DOI: 10.6084/m9.figshare.5122729.v1
title: Supplementary Material for: Signaling via Dopamine D1 and D3 Receptors Oppositely Regulates Cocaine-Induced Structural Remodeling of Dendrites and Spines

description: Repeated exposure to cocaine can induce persistent alterations in the brain. The structural remodeling of dendrites and dendritic spines is thought to play a critical role in cocaine addiction. We previously demonstrated that signaling via dopamine D1 and D3 receptors have opposite effects on cocaine-induced gene expression. Here, we show that cocaine-induced structural remodeling in the nucleus accumbens (NAc) and caudoputamen (CPu) is mediated by D1 receptors and inhibited by D3 receptors. In addition, chronic exposure to cocaine results in an altered number of asymmetric spine synapses via the actions of both D1 and D3 receptors. The contradictory effects of D1 and D3 receptor signaling on cocaine-induced structural remodeling is associated with NMDA-receptor R1 subunit (NR1) phosphorylation, and is dependent upon the activation of extracellular signal-regulated kinase (ERK). In addition, we found that D1 and D3 receptor signaling has contradictory effects upon the activation of the myocyte enhancer factor 2 (MEF2), which is involved in the dendritic remodeling after cocaine treatment. Together, these data suggest that dopamine D1 and D3 receptors differentially regulate the cocaine-induced structural remodeling of dendrites and spines via mechanisms involving the consecutive actions of NR1 phosphorylation, ERK activation, and MEF2 activity in the NAc and CPu.
DOI: 10.6084/m9.figshare.7578623.v1
title: Self-assembled tetrameric H<sub>2</sub>O clusters in the crystal lattice of [Cu(μ<sup>2</sup>-OH){Ph<sub>2</sub>P(O)NP(O)Ph<sub>2</sub>-κ<sup>1</sup><i>O,O′</i>}(1,10-phen-κ<sup>2</sup><i>N,N′</i>)]<sub>2</sub>·2H<sub>2</sub>O

description: The synthesis and characterization of the dinuclear Cu(II) complex [Cu(μ<sup>2</sup>-OH){Ph<sub>2</sub>P(O)NP(O)Ph<sub>2</sub>-κ<sup>1</sup><i>O,O′</i>}(1,10-phen-κ<sup>2</sup><i>N,N′</i>)]<sub>2</sub>·2H<sub>2</sub>O (<b>1</b>), 1,10-phen = 1,10-phenanthroline, is described. X-ray crystallographic studies reveal that the Cu(II) centers of <b>1</b> are bridged by two OH<sup>−</sup> groups and are coordinated by the (O,O) = Ph<sub>2</sub>P(O)NP(O)Ph<sub>2</sub><sup>−</sup> ligand in a monodentate fashion, unprecedented for Cu(II). The crystal lattice of <b>1</b> also contains H<sub>2</sub>O molecules, which are involved in the formation of a hydrogen bonding network with bridging OH<sup>−</sup> groups and noncoordinated O atoms of the (O,O) ligand. These H<sub>2</sub>O molecules are arranged in the crystal lattice of <b>1</b> as tetrameric clusters. The packing of molecules in the structure of <b>1</b> was investigated by Hirshfeld Surface analysis.
DOI: 10.17632/frfrj8wpbk
title: Twister: Construction and structural relaxation of commensurate moiré superlattices

description: Introduction of a twist between layers of two-dimensional materials which leads to the formation of a moiré pattern is an emerging pathway to tune the electronic, vibrational and optical properties. The fascinating properties of these systems are often linked to large-scale structural reconstruction of the moiré pattern. Hence, an essential first step in the theoretical study of these systems is the construction and structural relaxation of the atoms in the moiré superlattice. We present the Twister package, a collection of tools that constructs commensurate superlattices for any combination of 2D materials and also helps perform structural relaxations of the moiré superlattice. Twister constructs commensurate moiré superlattices using the coincidence lattice method and provides an interface to perform structural relaxations using classical forcefields.