cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/e120242v1
title: Data and Code for "A Few Bad Apples? Racial Bias in Policing"

description: We estimate the degree to which individual police officers practice racial discrimination. Using a bunching estimation design and data from the Florida Highway Patrol, we show that minorities are less likely to receive a discount on their speeding tickets than white drivers. Disaggregating this difference to the individual police officer, we estimate that 37% of officers practice discrimination. We then apply our officer- level discrimination measures to various policy-relevant questions in the literature. In particular, reassigning officers across locations based on their lenience can effectively reduce the aggregate disparity in treatment.<br><br>
DOI: 10.6084/m9.figshare.14071520
title: Benchmark results

description: Benchmark I: Transport and biodegradation of dissolved organic matter<br><br>In this benchmark, numerical results using three numerical solution strategies (global implicit approach, nodal-OS scheme, and IP-OS scheme) are compared with the analytical solution from Van Genuchten (1981).<br><br>Benchmark II: Coupled diffusion-dissolution problem with strong feedback of porosity change<br><br>In this benchmark, numerical results using the IP-OS scheme are compared with the analytical solution from Hayek et al. (2011).<br><br>Benchmark III: Advection-dispersion-dissolution problem with feedback of porosity and permeability changes<br><br>In this benchmark, numerical results using the IP-OS scheme are compared with the experimental data from a flow-through column experiment.<br><br>References:<br><br>Van Genuchten, M. T. (1981). Analytical solutions for chemical transport with simultaneous adsorption, zero-order production and first-order decay.Journal of820hydrology,49(3-4), 213–233<br><br>Hayek, M., Kosakowski, G., & Churakov, S. (2011). Exact analytical solutions for a diffusion problem coupled with a precipitation-dissolution reaction and feedback of porosity change.Water resources research,47(7)
DOI: 10.6084/m9.figshare.14071520.v1
title: Benchmark results

description: Benchmark I: Transport and biodegradation of dissolved organic matter<br><br>In this benchmark, numerical results using three numerical solution strategies (global implicit approach, nodal-OS scheme, and IP-OS scheme) are compared with the analytical solution from Van Genuchten (1981).<br><br>Benchmark II: Coupled diffusion-dissolution problem with strong feedback of porosity change<br><br>In this benchmark, numerical results using the IP-OS scheme are compared with the analytical solution from Hayek et al. (2011).<br><br>Benchmark III: Advection-dispersion-dissolution problem with feedback of porosity and permeability changes<br><br>In this benchmark, numerical results using the IP-OS scheme are compared with the experimental data from a flow-through column experiment.<br><br>References:<br><br>Van Genuchten, M. T. (1981). Analytical solutions for chemical transport with simultaneous adsorption, zero-order production and first-order decay.Journal of820hydrology,49(3-4), 213–233<br><br>Hayek, M., Kosakowski, G., & Churakov, S. (2011). Exact analytical solutions for a diffusion problem coupled with a precipitation-dissolution reaction and feedback of porosity change.Water resources research,47(7)
DOI: 10.7277/hvxc-6p52
title: Performance-Based Design and Real-Time Large-Scale Testing to Enable Implementation of Advanced Damping Systems (NEES-2008-0648)

description: &lt;p&gt;&lt;strong&gt;Title:&lt;/strong&gt; Performance-Based Design and Real-Time Large-Scale Testing to Enable Implementation of Advanced Damping Systems (NEES-2008-0648)&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Year Of Curation: &lt;/strong&gt;2013&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Description: &lt;/strong&gt;Advanced structural damping systems such as magnetorheological (MR) dampers have great potential improve our ability to achieve performance-based structural design (PBD) directed towards seismic resilience. However, developing methods for real-time hybrid (RTH) testing of these systems is essential to enable the validation of these approaches. In this NEESR project, large-scale structural models, controlled with MR devices are being tested at the Lehigh RTMD NEES Equipment Site using RTH techniques. &lt;/p&gt; &lt;p&gt;&lt;strong&gt;Award: &lt;/strong&gt;http://www.nsf.gov/awardsearch/showAward?AWD_ID=1011534&lt;/p&gt; &lt;p&gt;&lt;strong&gt;PIs &amp; CoPIs: &lt;/strong&gt;Shirley Dyke, Anil Agrawal, Richard Christenson, James Ricles, Billie Spencer&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Dates: &lt;/strong&gt;September 01, 2008 - June 22, 2012&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Organizations: --&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Facilities: &lt;/strong&gt;Lehigh University, PA, United States,    University of Illinois at Urbana-Champaign, IL, United States&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Sponsor: &lt;/strong&gt;NSF - 1011534&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Keywords: &lt;/strong&gt;Supplemental damping,Seismic protective system,Damping device,Large-scale validation testing,Structural response/behavior modification&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Publications: &lt;/strong&gt;&lt;br /&gt; &quot;Comparison of 200 KN MR Damper Models for use in Real-time Hybrid Simulation&quot;&lt;br /&gt; &quot;Development of a Large-Scale MR Damper Model for Seismic Hazard Mitigation Assessment of Structures&quot;&lt;br /&gt; &quot;Accommodating MR Damper Dynamics for Control of Large Scale Structural Systems&quot;&lt;/p&gt; &lt;nb:citations&gt;&lt;/nb:citations&gt;
DOI: 10.6084/m9.figshare.14071577
title: Ribosomal protein database of Proteus vulgaris ATCC 49132

description: This work presents the ribosomal protein database of <i>Proteus vulgaris </i>ATCC 49132<i>. </i>Original data for the work came from the annotated proteome data of the bacterium downloaded from UniProt. Using an in-house MATLAB ribosomal protein database analysis software, the original proteome data file was parsed to extract protein name and amino acid sequence of all ribosomal proteins in the species. The database also includes calculated variables such as number of residues, molecular weight, and nucleotide sequence. Overall, the presented database could serve as a ribosomal protein mass fingerprint for use in microbial identification, or it could be used in fundamental studies seeking to uncover new insights into ribosomal protein biology.
DOI: 10.6084/m9.figshare.14071577.v1
title: Ribosomal protein database of Proteus vulgaris ATCC 49132

description: This work presents the ribosomal protein database of <i>Proteus vulgaris </i>ATCC 49132<i>. </i>Original data for the work came from the annotated proteome data of the bacterium downloaded from UniProt. Using an in-house MATLAB ribosomal protein database analysis software, the original proteome data file was parsed to extract protein name and amino acid sequence of all ribosomal proteins in the species. The database also includes calculated variables such as number of residues, molecular weight, and nucleotide sequence. Overall, the presented database could serve as a ribosomal protein mass fingerprint for use in microbial identification, or it could be used in fundamental studies seeking to uncover new insights into ribosomal protein biology.
DOI: 10.5281/zenodo.4545666
title: Simulated data 1 from "Integrative reconstruction of cancer genome karyotypes using InfoGenomeR"

description: This dataset contains NA12878-based simulated data for GRCh37 and GRCh38 from "Integrative reconstruction of cancer genome karyotypes using InfoGenomeR". Simulated data were generated and described at https://github.com/dmcblab/InfoGenomeR_simulation. It contains input files to run InfoGenomeR (https://github.com/dmcblab/InfoGenomeR), and corresponding output files.
DOI: 10.5281/zenodo.4545665
title: Simulated data 1 from "Integrative reconstruction of cancer genome karyotypes using InfoGenomeR"

description: This dataset contains NA12878-based simulated data for GRCh37 and GRCh38 from "Integrative reconstruction of cancer genome karyotypes using InfoGenomeR". Simulated data were generated and described at https://github.com/dmcblab/InfoGenomeR_simulation. It contains input files to run InfoGenomeR (https://github.com/dmcblab/InfoGenomeR), and corresponding output files.
DOI: 10.5517/ccdc.csd.cc269tzb
title: CCDC 2035242: Experimental Crystal Structure Determination

description: Related Article: Satoshi Iguchi, Naoki Yoneyama, Takahiko Sasaki|2021|CSD Communication|||
DOI: 10.5281/zenodo.4554522
title: qc3C manuscript simuated sweep configuration and source code

description: This is the repository of configuration details and source code necessary to reproduce the simulated sweep for the manuscript : qc3C - reference-free quality control for Hi-C sequencing data. The repository also contains the qc3C analysis results used in the paper.
DOI: 10.5281/zenodo.4554525
title: baofeng-apm/DATAforAGU: First release of data for Tangshan earthquake monitoring on distributed optical fiber sensing observation

description: Aftershock' waveform data for Tangshan earthquake monitoring on distributed acoustic sensing observation in my manuscript submitted to Geophysical Research Letters.
DOI: 10.7277/2anr-tk55
title: Using NEES Field Shakers and IRIS Equipment to Measure Crustal Structure (NEES-2006-0155)

description: &lt;p&gt;&lt;b&gt;Title:&lt;/b&gt; Using NEES Field Shakers and IRIS Equipment to Measure Crustal Structure (NEES-2009-0155)&lt;/p&gt; &lt;p&gt;&lt;b&gt;Year Of Curation: &lt;/b&gt;2009&lt;/p&gt; &lt;p&gt;&lt;b&gt;Description: &lt;/b&gt;NW Nevada Seismic Experiment: Hi Res VibroseisA reflection, refraction, and teleseismic imagingexperiment to better understand the transition from the Basin andRange province to the Sierra Nevada, c. 1000 vertical stationsrecorded large explosions and experimental NEES vibrator in September 2004; 29 L-22s (V,N,E) at 40 sps continous recording recorded passive data 9/04-4/05.&lt;/p&gt; &lt;p&gt;&lt;b&gt;Award: --&lt;/b&gt;&lt;/p&gt; &lt;p&gt;&lt;b&gt;PIs &amp; CoPIs: &lt;/b&gt;Simon Klemperer&lt;/p&gt; &lt;p&gt;&lt;b&gt;Dates: &lt;/b&gt;August 01, 2004 - January 18, 2008&lt;/p&gt; &lt;p&gt;&lt;b&gt;Organizations: &lt;/b&gt;Stanford University, CA, United States&lt;/p&gt; &lt;p&gt;&lt;b&gt;Facilities: &lt;/b&gt;Stanford University, CA, United States,University of Texas at Austin, TX, United States&lt;/p&gt; &lt;p&gt;&lt;b&gt;Sponsor: &lt;/b&gt;NSF&lt;/p&gt; &lt;p&gt;&lt;b&gt;Keywords: &lt;/b&gt;Seismic Response Analysis,Vibroseis,Crustal Vibroseis&lt;/p&gt; &lt;p&gt;&lt;b&gt;Publications: &lt;/b&gt; &quot;NW Nevada Seismic Experiment&quot;&lt;/p&gt; &lt;nb:citations&gt;&lt;/nb:citations&gt;
DOI: 10.5281/zenodo.4477923
title: baofeng-apm/DATAforAGU: First release of data for Love verification

description: Love waveform derived from the empirical Green's functions and Ground Truth earthquake in my manuscript submitted to Journal of Geophysical Research: Solid Earth.
DOI: 10.5281/zenodo.4477922
title: baofeng-apm/DATAforAGU: First release of data for Love verification

description: Love waveform derived from the empirical Green's functions and Ground Truth earthquake in my manuscript submitted to Journal of Geophysical Research: Solid Earth.
DOI: 10.6084/m9.figshare.14071433.v1
title: Data: Socioeconomic Identity and Heterogeneity in Cooking Fuel Choice - Evidence from Post-Earthquake Nepal

description: Segmenting population into subgroups with higher intergroup, but lower intragroup, heterogeneity can be useful in enhancing the effectiveness of many socio-economic policy interventions; yet it has received little attention in promoting clean cooking. Here, we use PERMANOVA, a distance-based multivariate analysis, to identify the factor that captures the highest intergroup heterogeneity in the choice of cooking fuels.
DOI: 10.6084/m9.figshare.14068700
title: Material Suplementario 1. Metadata obtenida de GISAID

description: <b>Material Suplementario 1. </b>Números de acceso de los genomas utilizados en este estudio. La metadata fue obtenida de la base de datos GISAID. <br><br>Agradecemos a los Laboratorios del Instituto Nacional de Salud del Perú involucrados en el procesamiento y secuenciamiento de las muestras.<br>
DOI: 10.6084/m9.figshare.14068700.v3
title: Material Suplementario 1. Metadata obtenida de GISAID

description: <b>Material Suplementario 1. </b>Números de acceso de los genomas utilizados en este estudio. La metadata fue obtenida de la base de datos GISAID. <br><br>Agradecemos a los Laboratorios del Instituto Nacional de Salud del Perú involucrados en el procesamiento y secuenciamiento de las muestras.<br>
DOI: 10.6084/m9.figshare.14068700.v2
title: Material Suplementario 1. Metadata obtenida de GISAID

description: <b>Material Suplementario 1. </b>Números de acceso de los genomas utilizados en este estudio. La metadata fue obtenida de la base de datos GISAID. <br><br>Las muestras fueron procesadas por el Laboratorio de Referencia Nacional de Virus Respiratorios, y secuenciadas por el Laboratorio de Referencia Nacional de Biotecnología y Biología Molecular, ambos del INS-Perú. <br>
DOI: 10.6084/m9.figshare.14072108
title: ICMR –Task Force Study on the incidence, mortality, morbidity and socio-economic burden of Snakebite in India: A study protocol

description: The data relates to informed and questionnaire for data collection for epidemiological and economic burden estimation of snakebites in India.
DOI: 10.15139/s3/c4no7e
title: Data and Codes for Assessing North Carolina Community Flood Vulnerability and Risk with an Empirical Predictive Modeling Approach

description: Data and code files
DOI: 10.7277/r1nh-fq05
title: NEES E-Defense: Seismic Performance of Interlocking Spiral Columns and Rectang. Cols. Based on Shake Table Tests (NEES-2006-0254

description: &lt;p&gt;&lt;strong&gt;Title:&lt;/strong&gt; NEES E-Defense: Seismic Performance of Interlocking Spiral Columns and Rectangular Columns Based on Shake Table Tests (NEES-2006-0254)&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Year Of Curation: &lt;/strong&gt;2012&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Description: &lt;/strong&gt;In Japan rectangular bridge columns with hoop reinforcement are more common while in California interlocking spiral reinforced bridge columns are more common. Thus to compare the performance of CalTrans Seismic Design Code to the Japanese Railway Association Seismic Design Code a total of four test specimens were designed for evaluation. Specimen 1 and 2 are polygonal in cross section and employ the use of interlocking spiral reinforcement. Specimen 3 and 4 are rectangular cross sections with typical hoop reinforcement. These specimens were subjected to the JR Takatori Station ground motion records observed during the 1995 Kobe Earthquake. The ground motion was scaled for an elastic level (8%), yield level (14%), design level (90%), and maximum level excitation (120%). The same scaling was employed for each of the four specimens. Once these four scalings of the ground motion were performed for each of the specimens, the design and maximum level excitations were then repeated. Finally, the specimens were then subjected to an even greater scaling of 140% and a maximum scaling of 160% thus leading to the maximum displacement capacity of the shake table. This 160% ground motion was then repeated until failure of the specimens was rendered.&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Award: &lt;/strong&gt; N/A&lt;/p&gt; &lt;p&gt;&lt;strong&gt;PIs &amp; CoPIs: &lt;/strong&gt;Stephen Mahin&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Dates: &lt;/strong&gt;August 31, 2006 to Present&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Organizations: &lt;/strong&gt;University of California, Berkeley, CA, United States&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Facilities: &lt;/strong&gt;University of California, Berkeley, CA, United States&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Sponsor: &lt;/strong&gt;NIED-E/Defense&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Keywords: &lt;/strong&gt;Columns,Bridges, Spiral Reinforcement, Hoop Reinforcement, Shake Table&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Publications: &lt;/strong&gt;Takashi Matsumoto, &quot;Seismic Performance of Interlocking Spiral Columns and Rectangular Columns Based on Shake Table Tests&quot;&lt;/p&gt; &lt;nb:citations&gt;&lt;/nb:citations&gt;
DOI: 10.6084/m9.figshare.14072102
title: Dataset periodontitis y2021m02

description: <b>Description and susceptibility of periodontopathic bacteria with severe chronic periodontitis among a group of Peruvian patients: A pilot study</b> <b> </b> <b>ABSTRACT</b> <b>Background</b>: Severe periodontal disease is highly prevalent worldwide, affecting 20 % of the population between the ages of 35 and 44 years old. The etiological epidemiology in Peru is scarce, even though some studies describe a prevalence of 48.5 % of periodontal disease in the general population. Periodontitis is one of the most prevalent oral diseases associated with site-specific changes in the oral microbiota and it has been associated to socioeconomic state. This study aimed to determine the etiology and resistance profile of bacteria identified in a group of patients with chronic severe periodontitis. <b>Methods</b>: Six subgingival plaque samples were collected from eight patients with chronic severe periodontitis. Bacterial identification was carried out by an initial culture, PCR amplification and subsequently DNA sequencing. We evaluated the antibiotic susceptibility by disk diffusion method. <b>Results</b>: Variable diversity in oral microbiota was identified in each one the eight patients. The bacterial genus most frequently found was <i>Streptococcus </i>spp. (15/48, 31.3 %) followed by <i>Rothia </i>spp. (11/48, 22.9 %), <i>Actinomyces</i> spp. (9/48, 18.8 %), and <i>Eikenella</i> spp. (4/48, 8.3 %). The most common species found was <i>Rothia dentocariosa</i> (8/48, 16.7 %). The antimicrobial susceptibility assay varied according to the species tested, however, among all the isolates evaluated <i>Actinomyces naeslundii</i> was resistant to penicillin and tetracycline; <i>Eikenella corrodens</i> resistant to dicloxacillin; and <i>Rothia dentocariosa</i> was resistant to amoxicillin + clavulanic acid and metronidazole but also susceptible to trimethoprim-sulfamethoxazole. <b>Conclusions</b>: Bacterial species of importance medical were detected in patients with chronic severe periodontitis, especially <i>Rothia dentocariosa</i>, most prevalent in this study. Specific antimicrobial therapy is required to improve the treatment outcomes of patients with periodontal disease and to avoid the development of antibiotic resistance.
DOI: 10.25959/egjm-ag13
title: Metabarcoding reveals landscape drivers of beetle community composition approximately 50 years after timber harvesting

description: This dataset includes raw Miseq sequencing data, bioinformatic pipeline and R codes that were used in the study "Metabarcoding reveals landscape drivers of beetle community composition approximately 50 years after timber harvesting". This manuscript has not been published yet when this dataset was deposited on this portal.
DOI: 10.25959/65c0-0e68
title: FoodChoices4

description: One of a series of real-world studies designed to explore the impact of social, emotional and environmental factors on eating. This study was designed to investigate the relationship between attentional bias, impulsivity, and real-world eating patterns. In addition to completing laboratory tasks, participants were required to log every instance of food or drink consumed into a smartphone during a two-week real-world monitoring period. For a subset of these reports, participants answered questions about their affect, activities and social setting at the time of consumption. Participants also completed to randomly-timed non-eating assessments throughout each day.
DOI: 10.6084/m9.figshare.14072156
title: Margins_for publication_2018.xls

description: Colorectal cancer anonymized databaseColorectal cancer margins
DOI: 10.6084/m9.figshare.14072156.v1
title: Margins_for publication_2018.xls

description: Colorectal cancer anonymized databaseColorectal cancer margins
DOI: 10.5281/zenodo.4541153
title: An Open GMNS Dataset of a Dynamic Multi-modal Transportation Network Model of Melbourne, Australia

description: We develop and share an open dataset for reproduction of a dynamic multi-modal transportation network model of Melbourne, Australia. The dataset is developed in line with the General Modeling Network Specification (GMNS), enabling software-agnostic human and machine readability. GMNS is a standard readable format for sharing routable transportation network data that is designed to be used in multimodal static and dynamic transportation operations and planning models.
DOI: 10.5281/zenodo.4541152
title: An Open GMNS Dataset of a Dynamic Multi-modal Transportation Network Model of Melbourne, Australia

description: We develop and share an open dataset for reproduction of a dynamic multi-modal transportation network model of Melbourne, Australia. The dataset is developed in line with the General Modeling Network Specification (GMNS), enabling software-agnostic human and machine readability. GMNS is a standard readable format for sharing routable transportation network data that is designed to be used in multimodal static and dynamic transportation operations and planning models.
DOI: 10.5281/zenodo.4078968
title: Dr.

description: Supplementary figures and tables for submission of Szabó et al. manuscript titled "Functional Comparison of Blood-Derived Human Neural Progenitor Cells" and uploaded 11st of October 2020.
DOI: 10.5281/zenodo.4078967
title: Dr.

description: Supplementary figures and tables for submission of Szabó et al. manuscript titled "Functional Comparison of Blood-Derived Human Neural Progenitor Cells" and uploaded 11st of October 2020.
DOI: 10.6084/m9.figshare.14072257
title: Additional file 2 of A gene co-association network regulating gut microbial communities in a Duroc pig population

description: Additional file 1: Supplementary Table 1. Microbial traits employed in the study.
DOI: 10.6084/m9.figshare.14072257.v1
title: Additional file 2 of A gene co-association network regulating gut microbial communities in a Duroc pig population

description: Additional file 1: Supplementary Table 1. Microbial traits employed in the study.
DOI: 10.6084/m9.figshare.14072266
title: Additional file 4 of A gene co-association network regulating gut microbial communities in a Duroc pig population

description: Additional file 3: Supplementary Table 2. List of predicted target genes with at least one TF binding site for STAT1 and PRDM15.
DOI: 10.6084/m9.figshare.14072269
title: Additional file 5 of A gene co-association network regulating gut microbial communities in a Duroc pig population

description: Additional file 4: Supplementary Table 3. List of predicted target genes with at least one TF binding site for microRNA ssc-mir-371.
DOI: 10.6084/m9.figshare.14072269.v1
title: Additional file 5 of A gene co-association network regulating gut microbial communities in a Duroc pig population

description: Additional file 4: Supplementary Table 3. List of predicted target genes with at least one TF binding site for microRNA ssc-mir-371.
DOI: 10.6084/m9.figshare.14072266.v1
title: Additional file 4 of A gene co-association network regulating gut microbial communities in a Duroc pig population

description: Additional file 3: Supplementary Table 2. List of predicted target genes with at least one TF binding site for STAT1 and PRDM15.
DOI: 10.6084/m9.figshare.14072272
title: Additional file 6 of A gene co-association network regulating gut microbial communities in a Duroc pig population

description: Additional file 5: Supplementary Table 4. Overlappings QTLs confirmed in our study from the reported by Crespo et al., 2019.
DOI: 10.6084/m9.figshare.14072272.v1
title: Additional file 6 of A gene co-association network regulating gut microbial communities in a Duroc pig population

description: Additional file 5: Supplementary Table 4. Overlappings QTLs confirmed in our study from the reported by Crespo et al., 2019.