cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.314b5
title: Data from: Predicting global population connectivity and targeting conservation action for snow leopard across its range

description: Movements of individuals within and among populations help to maintain
 genetic variability and population viability. Therefore, understanding
 landscape connectivity is vital for effective species conservation. The
 snow leopard is endemic to mountainous areas of Central Asia and occurs
 within 12 countries. We assess potential connectivity across the species’
 range to highlight corridors for dispersal and genetic flow between
 populations, prioritizing research and conservation action for this
 wide-ranging, endangered top-predator. We used resistant kernel modeling
 to assess snow leopard population connectivity across its global range. We
 developed an expert-based resistance surface that predicted cost of
 movement as functions of topographical complexity and land cover. The
 distribution of individuals was simulated as a uniform density of points
 throughout the currently accepted global range. We modeled population
 connectivity from these source points across the resistance surface using
 three different dispersal scenarios that likely bracket the lifetime
 movements of individual snow leopard: 100km, 500km and 1000km. The
 resistant kernel models produced predictive surfaces of dispersal
 frequency across the snow leopard range for each distance scenario. We
 evaluated the pattern of connectivity in each of these scenarios and
 identified potentially important movement corridors and areas where
 connectivity might be impeded. The models predicted two regional
 populations, in the north and south of the species range respectively, and
 revealed a number of potentially important connecting areas. Discrepancies
 between model outputs and observations highlight unsurveyed areas of
 connected habitat that urgently require surveying to improve understanding
 of the global distribution and ecology of snow leopard, and target land
 management actions to prevent population isolation. The connectivity maps
 provide a strong basis for directed research and conservation action, and
 usefully direct the attention of policy makers.
description: resistance landscape for
 snow leopardFloating point raster
 resistance landscape model for snow leopard range in Central
 Asiasl_resist.zip
DOI: 10.15468/dl.rt3myp
title: Occurrence Download

description: A dataset containing 2292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "DatasetKey is one of (iNaturalist Research-grade Observations, European stag beetle monitoring network: transect observations, Observation.org, Nature data from around the World, IberArthro: A database compiling taxonomic and distributional data on Ibero-Balearic arthropods, Biodiversity4all Research-Grade Observations, Insect Collection from the Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Portugal, Two new species of Domene Fauvel, 1873 (Coleoptera: Staphylinidae: Paederinae) from Portugal and faunistic notes, International Barcode of Life project (iBOL), Telmatophilus typhae (Fallén, 1802) (Coleoptera: Cryptophagidae), new species for Portugal)",
 "Geometry POLYGON((-8.55156 40.99529,-7.98386 40.99529,-7.98386 41.41535,-8.55156 41.41535,-8.55156 40.99529))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Coleoptera",
 "Year 2006-2026"
 ]
}

 The dataset includes 2292 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001637-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.tn28f
title: Data from: Comparative analyses of clinical and environmental populations of Cryptococcus neoformans in Botswana

description: Cryptococcus neoformans var. grubii (Cng) is the most common cause of
 fungal meningitis, and its prevalence is highest in sub-Saharan Africa.
 Patients become infected by inhaling airborne spores or desiccated yeast
 cells from the environment, where the fungus thrives in avian droppings,
 trees and soil. To investigate the prevalence and population structure of
 Cng in southern Africa, we analysed isolates from 77 environmental samples
 and 64 patients. We detected significant genetic diversity among isolates
 and strong evidence of geographic structure at the local level. High
 proportions of isolates with the rare MATa allele were observed in both
 clinical and environmental isolates; however, the mating-type alleles were
 unevenly distributed among different subpopulations. Nearly equal
 proportions of the MATa and MATα mating types were observed among all
 clinical isolates and in one environmental subpopulation from the eastern
 part of Botswana. As previously reported, there was evidence of both
 clonality and recombination in different geographic areas. These results
 provide a foundation for subsequent genomewide association studies to
 identify genes and genotypes linked to pathogenicity in humans.
description: Input file for
 StructureInput file for
 Structure. 139 isolates in total without two VNII
 isolates.Structure.inputInput file for SplitsTreeInput file for SplitsTreeSplitsTree.nexInput file for SmartPCAInput file for SmartPCASmartPCA.pedInput file for MultiLocInput file for MultiLocMultiloc.musInput file for eBurstInput file for eBurstEBurst.csvConcatenated fasta fileConcatenated fasta file of all isolates with 8 loci.Concatenate.all.fasAligned fasta file of CAP59CAP59.all.noRef.aln.fasAligned fasta file of GPD1GPD1.all.noRef.aln.fasAligned fasta file of IGS1IGS1.all.noRef.aln.fasAligned fasta file of LAC1LAC1.all.noRef.aln.fasAligned fasta file of PLB1PLB1.all.noRef.aln.fasAligned fasta file of SOD1SOD1.all.noRef.aln.fasAligned fasta file of TEF1TEF1.all.noRef.aln.fasAligned fasta file of URA5URA5.all.noRef.aln.fasPacBio CCS ReadsPacbio CCS raw reads, barcode information and primer sequences were used in MLSTEZ for generating consensus sequences.RawReads.zip
DOI: 10.34740/kaggle/dsv/14640537
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5061/dryad.j3k0q
title: Data from: Population structure and history of the Welsh sheep breeds determined by whole genome genotyping

description: Background: One of the most economically important areas within the Welsh
 agricultural sector is sheep farming, contributing around £230 million to
 the UK economy annually. Phenotypic selection over several centuries has
 generated a number of native sheep breeds, which are presumably adapted to
 the diverse and challenging landscape of Wales. Little is known about the
 history, genetic diversity and relationships of these breeds with other
 European breeds. We genotyped 353 individuals from 18 native Welsh sheep
 breeds using the Illumina OvineSNP50 array and characterised the genetic
 structure of these breeds. Our genotyping data were then combined with,
 and compared to, those from a set of 74 worldwide breeds, previously
 collected during the International Sheep Genome Consortium HapMap project.
 Results: Model based clustering of the Welsh and European breeds indicated
 shared ancestry. This finding was supported by multidimensional scaling
 analysis (MDS), which revealed separation of the European, African and
 Asian breeds. As expected, the commercial Texel and Merino breeds appeared
 to have extensive co-ancestry with most European breeds. Consistently high
 levels of haplotype sharing were observed between native Welsh and other
 European breeds. The Welsh breeds did not, however, form a genetically
 homogeneous group, with pairwise FST between breeds averaging 0.107 and
 ranging between 0.020 and 0.201. Four subpopulations were identified
 within the 18 native breeds, with high homogeneity observed amongst the
 majority of mountain breeds. Recent effective population sizes estimated
 from linkage disequilibrium ranged from 88 to 825. Conclusions: Welsh
 breeds are highly diverse with low to moderate effective population sizes
 and form at least four distinct genetic groups. Our data suggest common
 ancestry between the native Welsh and European breeds. These findings
 provide the basis for future genome-wide association studies and a first
 step towards developing genomics assisted breeding strategies in the UK.
description: Welsh sheep Illumina 50K
 genotyping results and phylogenetic trees50K Illumina SNP array
 data .ped and .map files and complete phylogenetic tree files used in our
 paperWelsh_sheep_genotyping_&_trees.zip
DOI: 10.5061/dryad.sb8h1
title: Data from: Modeling character change heterogeneity in phylogenetic analyses of morphology through the use of priors

description: The Mk model was developed for estimating phylogenetic trees from discrete
 morphological data, whether for living or fossil taxa. Like any model, the
 Mk model makes a number of assumptions. One assumption is that transitions
 between character states are symmetric (i.e., the probability of changing
 from 0 to 1 is the same as 1 to 0). However, some characters in a data
 matrix may not satisfy this assumption. Here, we test methods for relaxing
 this assumption in a Bayesian context. Using empirical datasets, we
 perform model fitting to illustrate cases in which modeling asymmetric
 transition rates among characters is preferable to the standard Mk model.
 We use simulated datasets to demonstrate that choosing the best-fit model
 of transition-state symmetry can improve model fit and phylogenetic
 estimation.
description: READMEExplains the content of
 various files.EmpiricalDataRaw empirical data, and the results of estimating phylogenetic trees from these data using MrBayes.SimulationsSimulated data files, and the results of phylogenetic estimation from these data.MrBayesBlocksMrBayes instruction sets for each prior.SpreadsheetsProcessed data files used to make the figures in the paper.ScriptsScripts used for data generation and analysis.
DOI: 10.60493/k5251-8nn32
title: List of sources analyzed for Trautmann, Friedrich, Tobias Schopper, und Thilo Wiertz. 2025. "Narrationen ostdeutscher Identität im Diskurs der extremen Rechten"

description: File: trautmann-et-al-2025-sources.csv
Description: Full list of original sources used in Trautmann, Friedrich, Tobias Schopper, und Thilo Wiertz. 2025. "Narrationen ostdeutscher Identität im Diskurs der extremen Rechten". Geographische Zeitschrift 113 (2): 96–121. https://doi.org/10.25162/gz-2025-0003. Please refer to the published article for details on methods and results.
DOI: 10.5061/dryad.306g8
title: Data from: Synthesis, characterization and modelling of zinc and silicate co-substituted hydroxyapatite

description: Experimental chemistry and atomic modelling studies were performed here to
 investigate a novel ionic co-substitution in hydroxyapatite (HA). Zinc,
 silicate co-substituted HA (ZnSiHA) remained phase pure after heating to
 1100°C with Zn and Si amounts of 0.6 wt% and 1.2 wt%, respectively. Unique
 lattice expansions in ZnSiHA, silicate Fourier transform infrared peaks
 and changes to the hydroxyl IR stretching region suggested Zn and silicate
 co-substitution in ZnSiHA. Zn and silicate insertion into HA was modelled
 using density functional theory (DFT). Different scenarios were considered
 where Zn substituted for different calcium sites or at a 2b site along the
 c-axis, which was suspected in singly substituted ZnHA. The most
 energetically favourable site in ZnSiHA was Zn positioned at a previously
 unreported interstitial site just off the c-axis near a silicate
 tetrahedron sitting on a phosphate site. A combination of experimental
 chemistry and DFT modelling provided insight into these complex
 co-substituted calcium phosphates that could find biomedical application
 as a synthetic bone mineral substitute.
description: FTIR raw
 dataRaw data from FTIR scans
 (wavenumber cm^-1 vs arbitrary intensity) of ZnSiHA.XRF raw
 dataXRF report from AMG
 Superalloys Ltd. of elemental oxide weight percentages. Oxides tested for
 included CaO, ZnO, SiO2, P2O5, Na2O, MgO, Al2O3, K2O, TiO2, Mn3O4, V2O5,
 Cr2O3, Fe2O3, BaO, ZrO2 and SrO.XRD raw
 dataXRD 2theta (degrees) vs.
 arbitrary intensity data for the ZnSiHA samples that were mixture of
 HA+aTCP (Table 1), and higher resolution scans of phase pure HA and
 substituted HA that were used in Rietveld refinement of the lattice
 parameters.Modelling
 filesCif files and CASTEP
 files for ZnSiHA with Zn at an interstitial position and on a Ca site, and
 ZnHA with Zn at an interstitial position.
DOI: 10.5061/dryad.db6kg
title: Data from: Orientation to the sun by animals and its interaction with crypsis

description: 1. Orientation with respect to the sun has been observed in a wide range
 of species and has generally been interpreted in terms of thermoregulation
 and/or ultraviolet (UV) protection. For countershaded animals, orientation
 with respect to the sun may also result from the pressure to exploit the
 gradient of coloration optimally to enhance crypsis. 2. Here, we use
 computational modelling to predict the optimal countershading pattern for
 an oriented body. We assess how camouflage performance declines as
 orientation varies using a computational model that incorporates realistic
 lighting environments. 3. Once an optimal countershading pattern for
 crypsis has been chosen, we determine separately how UV
 protection/irradiation and solar thermal inflow fluctuate with
 orientation. 4. We show that body orientations that could optimally use
 countershading to enhance crypsis are very similar to those that allow
 optimal solar heat inflow and UV protection. 5. Our findings suggest that
 crypsis has been overlooked as a selective pressure on orientation and
 that new experiments should be designed to tease apart the respective
 roles of these different selective pressures. We propose potential
 experiments that could achieve this.
description: funct_eco_2015_orientationMatlab code and data for replicating Figures 2-7, Figures S1-S5 and modelling.
DOI: 10.5061/dryad.8716
title: Data from: Getting a full dose? Reconsidering sex chromosome dosage compensation in the silkworm, Bombyx mori

description: Dosage compensation – equalizing gene expression levels in response to
 differences in gene dose or copy number – is classically considered to
 play a critical role in the evolution of heteromorphic sex chromosomes. As
 the X and Y diverge through degradation and gene loss on the Y (or the W
 in female-heterogametic ZW taxa), it is expected that dosage compensation
 will evolve to correct for sex-specific differences in gene dose. While
 this is observed in some organisms, recent genome-wide expression studies
 in other taxa have revealed striking exceptions. In particular, reports
 that both birds and the silkworm moth (Bombyx mori) lack dosage
 compensation have spurred speculation that this is the rule for all
 female-heterogametic taxa. Here we revisit the issue of dosage
 compensation in silkworm by replicating and extending the previous
 analysis. Contrary to previous reports, our efforts reveal that the global
 male:female expression ratio does not differ between the Z and autosomes,
 a pattern typically associated with dosage compensated taxa. We believe
 the previous report of unequal male:female ratios on the Z reflects
 artifacts of microarray normalization in conjunction with not testing a
 major assumption that the male:female global expression ratio was unbiased
 for autosomal loci. However, we also find that the global Z chromosome
 expression is significantly reduced relative to autosomes, a pattern not
 expected in dosage compensated taxa. This combination of male:female
 parity with an overall reduction in expression for sex-linked loci is not
 consistent with the prevailing evolutionary theory of sex chromosome
 evolution and dosage compensation.
description: ML_threshold_indicatorProbes_listed_by_genes
DOI: 10.7927/693w-e850
title: IPCC AR6 Synthesis Report SPM.7 (a) and LR Figure 4.4 (a) (Right): Potential of mitigation options in the near-term

description: Overview of selected mitigation options and their estimated costs and potentials in 2030. Relative potentials and costs will vary by place, context and time and in the longer term compared to 2030. Costs are net lifetime discounted monetary costs of avoided greenhouse gas emissions calculated relative to a reference technology. The potential (horizontal axis) is the quantity of net GHG emission reduction that can be achieved by a given mitigation option relative to a specified emission baseline. Net GHG emission reductions are the sum of reduced emissions and/or enhanced sinks. The baseline used consists of current policy (around 2019) reference scenarios from the AR6 scenarios database (25/75 percentile values). The mitigation potentials are assessed independently for each option and are not necessarily additive. Health system mitigation options are included mostly in settlement and infrastructure (e.g., efficient healthcare buildings) and cannot be identified separately. Fuel switching in industry refers to switching to electricity, hydrogen, bioenergy and natural gas. The length of the solid bars represents the mitigation potential of an option. Potentials are broken down into cost categories, indicated by different colours. Only discounted lifetime monetary costs are considered. Where a gradual colour transition is shown, the breakdown of the potential into cost categories is not well known or depends heavily on factors such as geographical location, resource availability, and regional circumstances, and the colours indicate the range of estimates. The uncertainty in the total potential is typically 25–50%. When interpreting this figure, the following should be taken into account: (1) The mitigation potential is uncertain, as it will depend on the reference technology (and emissions) being displaced, the rate of new technology adoption, and several other factors; (2) Different options have different feasibilities beyond the cost aspects, which are not reflected in the figure; and (3) Costs for accommodating the integration of variable renewable energy sources in electricity systems are expected to be modest until 2030, and are not included.
DOI: 10.5061/dryad.8720
title: Data from: Molecular detection of trophic links in a complex insect host-parasitoid food web

description: Previously, host-parasitoid links have been unveiled almost exclusively by
 time-intensive rearing, while molecular methods were used only in simple
 agricultural host-parasitoid systems in the form of species specific
 primers. Here we present a general method for molecular detection of these
 links applied to a complex caterpillar-parasitoid food web from tropical
 rainforest of Papua New Guinea. We DNA barcoded hosts, parasitoids and
 their tissue remnants and matched the sequences to our extensive library
 of local species. We were thus able to match 87% of host sequences and 36%
 of parasitoid sequences to species, and infer subfamily or family in
 almost all cases. Our analysis affirmed 93 hitherto unknown trophic links
 between 37 host species from a wide range of Lepidoptera families and 46
 parasitoid species from Hymenoptera and Diptera by identifying DNA
 sequences for both the host and the parasitoid involved in the
 interaction. Molecular detection proved especially useful in cases where
 distinguishing host species in caterpillar stage was difficult
 morphologically, or when the caterpillar died during rearing. We have even
 detected a case of extreme parasitoid specialization in a pair of
 Choreutis species which do not differ in caterpillar morphology and
 ecology. Using the molecular approach outlined here leads to better
 understanding of parasitoid host specificity, opens new possibilities for
 rapid surveys of food web structure and allows inference of species
 associations not already anticipated.
description: dataset
 recordsList of all 392 records
 in the dataset, including ones we failed to sequence.dataset
 sequencesAll 322 sequences from
 the dataset.host reference
 recordsA selection of 153
 records relevant to the dataset from the Lepidoptera reference
 library.host reference
 sequencesA selection of 153
 sequences relevant to the dataset from the Lepidoptera reference
 library.parasitoid reference
 recordsA selection of 329
 records relevant to the dataset from the parasitoid reference
 library.parasitoid reference
 sequencesA selection of 329
 sequences relevant to the dataset from the parasitoid reference
 library.
DOI: 10.5281/zenodo.18390939
title: Datasets and scripts for cirrus heterogeneity transect data

description: Cirrus heterogeneity and inhomogeneity datasets using in situ measurements acquired during 8 field campaigns taken globally.
DOI: 10.5281/zenodo.18390940
title: Datasets and scripts for cirrus heterogeneity transect data

description: Cirrus heterogeneity and inhomogeneity datasets using in situ measurements acquired during 8 field campaigns taken globally.
DOI: 10.5061/dryad.2q3qh
title: Data from: Individual identification from genetic marker data: developments and accuracy comparisons of methods

description: Genetic marker-based identification of distinct individuals and
 recognition of duplicated individuals has important applications in many
 research areas in ecology, evolutionary biology, conservation biology and
 forensics. The widely applied genotype mismatch (MM) method, however, is
 inaccurate because it relies on a fixed and suboptimal threshold number
 (TM) of mismatches, and often yields self-inconsistent pairwise
 inferences. In this study, I improved MM method by calculating an optimal
 TM to accommodate the number, mistyping rates, missing data and allele
 frequencies of the markers. I also developed a pairwise likelihood
 relationship (LR) method and a likelihood clustering (LC) method for
 individual identification, using poor-quality data that may have high and
 variable rates of allelic dropouts and false alleles at genotyped loci.
 The 3 methods together with the relatedness (RL) method were then compared
 in accuracy by analysing an empirical frog data set and many simulated
 data sets generated under different parameter combinations. The analysis
 results showed that LC is generally one or two orders more accurate for
 individual identification than the other methods. Its accuracy is
 especially superior when the sampled multilocus genotypes have poor
 quality (i.e. teemed with genotyping errors and missing data) and highly
 replicated, a situation typical of noninvasive sampling used in estimating
 population size. Importantly, LC is the only method that guarantees to
 produce self-consistent results by partitioning the entire set of
 multilocus genotypes into distinct clusters, each cluster containing one
 or more genotypes that all represent the same individual. The LC and LR
 methods were implemented in a computer program COLONY for free download
 from the Internet.
description: Simulated Data for
 COLONY analysisThis zipped file,
 SimuData.Zip, contains 5 folders, named as “Allele”, “Dup”, “Err”, “Loci”,
 “Robust”. Each folder contains a number of simulated input files for
 COLONY analysis, as described in detail in the ReadMe
 file.SimuData.zip