cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3617246_d2
title: Additional file 3: Table S3. of Updated Rice Kinase Database RKD 2.0: enabling transcriptome and functional analysis of rice kinase genes

description: Rice kinases with biotic stress responses. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3617315_d4
title: Additional file 4: of Canine atlantoaxial optimal safe implantation corridors â   description and validation of a novel 3D presurgical planning method using OsiriXâ ˘

description: Raw data of projected angle values calculated based on 4 different sets of anatomical landmarks. This data was used to determine the reproducibility of projected angle calculations considering the variability caused by anatomical axes simulation. (XLS 101Â kb)
DOI: 10.6084/m9.figshare.c.3617333_d3
title: Additional file 1: of Malaria vectors in South America: current and future scenarios

description: Tabular data in Excel Spreadsheet. Anopheles darlingi Occurrence Data. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3617339_d4
title: Additional file 5: Figure S1. of Transcriptional cellular responses in midgut tissue of Aedes aegypti larvae following intoxication with Cry11Aa toxin from Bacillus thuringiensis

description: RNAseq and log2 transformed RT-qPCR fold changes. Data is presented for RNAseq and RT-qPCR at 3, 6, 9, and 12 h of an LC50 Cry11Aa treatment. Also shown are RT-qPCR values for 9 and 12 h of unexposed larvae or Cry11Aa non-toxic mutants treatments. All log2 fold changes are referred to control larvae at the start of respective treatment. Panel A and B show genes with high correlation between RNAseq data and RT-qPCR of Cry11Aa. Panel C shows the three genes with low or no positive correlation between these data. (ZIP 779 kb)
DOI: 10.6084/m9.figshare.c.3617363_d4
title: Additional file 4: of Integrated analyses using RNA-Seq data reveal viral genomes, single nucleotide variations, the phylogenetic relationship, and recombination for Apple stem grooving virus

description: SNVs of ASGV isolate Fuji in ASGV-infected sample. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3617444_d1
title: Additional file 4: of Countdown to 2015 country case studies: systematic tools to address the â  black boxâ   of health systems and policy assessment

description: Health Systems Tracer Indicators Dashboard. (XLS 18Â kb)
DOI: 10.6084/m9.figshare.c.3617444_d2
title: Additional file 2: of Countdown to 2015 country case studies: systematic tools to address the â  black boxâ   of health systems and policy assessment

description: Policy and Programme Timeline Tool. (XLS 39Â kb)
DOI: 10.6084/m9.figshare.c.3617426_d6
title: Additional file 10: Table S4. of Identification of Nicotiana benthamiana microRNAs and their targets using high throughput sequencing and degradome analysis

description: Oligonucleotide sequences used for probes in Northern blot analysis and RT-PCR validation. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3617450_d1
title: MOESM1 of Genetic and epigenetic variation among inbred mouse littermates: identification of inter-individual differentially methylated regions

description: Additional file 1: Table S1. Variant calls from whole genome sequencing of two Avy mice, one yellow and one pseudoagouti. The variant calls and associated genomic coordinates are relative to the NCBI37/mm9 genome assembly. Table S2. Validation of variant calls. A set of 105 SNP variants were selected at random from those that differed between the two mice or were heterozygous in both mice. Of the 96 that could be PCR amplified and sequenced, those that did or did not validate are shown. Table S3. Variably methylated regions designated iiDMRs. A list of 356 regions that display differential methylation between inbred individuals, generated from 6 adjacent CpGs that support differential methylation and a difference of at least 20Â % between the highest and lowest value. Values from the Yellow excluded from calling regions. Table S4. Variably methylated regions that overlap ERV elements, designated ERV iiDMRs. A list of 55 regions that display differential methylation between inbred individuals and overlap with ERV elements from the UCSC mm9 repeatmasker database. Differentially methylated regions were generated from 6 adjacent CpGs that support differential methylation and a difference of at least 20Â % between the highest and lowest value. Values from the Yellow mouse were excluded from calling regions. Table S5. Primers used in the study.
DOI: 10.6084/m9.figshare.c.3617456_d7
title: Additional file 3: Table S2. of Deciphering common and specific transcriptional immune responses in pea towards the oomycete pathogens Aphanomyces euteiches and Phytophthora pisi

description: List of all pea responsive genes to infection with P. pisi. Microsoft Excel spreadsheet containing complete list of list of pea responsive genes to P. pisi infection at 6 hpi (P6UP, P6DOWN) and 20 hpi (P20UP, P20DOWN). All the genes have P ≤ 0.05 on log2 of fold change (FC) expression levels to the control samples. Each gene is presented by the M. truncatula gene ID (column A), annotation (column B), minimum E-value (the lowest E-value of the ten best hits) (column C), mean similarity (the average similarity value of the ten best hits) (column D) and enzyme code (column E) provided by Blast2GO. Ratios of log2 on the FC between each treatment and the corresponded control samples are presented in column F. Differentially expressed genes (P ≤ 0.05, ≥ 1.5 fold induction or ≤ 0.67 fold repression) are marked with light blue colour. (XLSX 329 kb)
DOI: 10.6084/m9.figshare.c.3617615_d4
title: Additional file 5: of Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity

description: A tab-formatted text file containing the results of the PCHi-C randomization preserving feature distributions along the chromosomes. (TXT 74 kb)
DOI: 10.6084/m9.figshare.c.3617657_d11
title: Additional file 14: of Identification of the BRD1 interaction network and its impact on mental disorder risk

description: Ingenuity pathway analysis of DEGs after overexpressing either BRD1-S or BRD1-L. This Excel spreadsheet contains a list of enriched canonical pathways identified by Ingenuity pathway analysis using the identified DEGs after upregulating either BRD1-S or BRD1-L. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3617657_d12
title: Additional file 16: of Identification of the BRD1 interaction network and its impact on mental disorder risk

description: Supporting information for the gene-set enrichment analyses using MAGMA. This file contains two Excel spreadsheets. Spreadsheet 1 contains gene-wide and experiment-wide significant genes from the gene-set enrichment analysis of the BRD1 interaction network and schizophrenia. Spreadsheet 2 contains all BRD1 gene sets used in the analysis. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3617723_d1
title: MOESM9 of A comparison of the protein-coding genomes of two green sulphur bacteria, Chlorobium tepidum TLS and Pelodictyon phaeoclathratiforme BU-1

description: Additional file 9. ensembl_1_copy_both_spp.pl. The Perl script used to identify the protein families with one copy in both species from Ensembl Genomes.
DOI: 10.6084/m9.figshare.c.3617723_d11
title: MOESM8 of A comparison of the protein-coding genomes of two green sulphur bacteria, Chlorobium tepidum TLS and Pelodictyon phaeoclathratiforme BU-1

description: Additional file 8. ensembl_uniqe_ppb.pl. The Perl script used to identify the protein families unique to P. phaeoclathratiforme from Ensembl Genomes.
DOI: 10.6084/m9.figshare.c.3617753_d3
title: Additional file 3: of Evolution in an extreme environment: developmental biases and phenotypic integration in the adaptive radiation of antarctic notothenioids

description: Raw landmark data for 3-D morphometrics, and raw linear measures in larval pharyngeal skeletons. (XLS 243 kb)
DOI: 10.6084/m9.figshare.c.3617744_d4
title: Additional file 1: Table S1. of No evidence of prenatal diversifying selection at locus or supertype levels in the dog MHC class II loci

description: MHC genotype data and sample information for the dog families. (XLSX 53Â kb)
DOI: 10.15468/dl.2vz856
title: Occurrence Download

description: A dataset containing 519 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Croomia pauciflora (Nutt.) Torr."
 ]
}

 The dataset includes 519 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033720-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3617813_d2
title: MOESM2 of Geographical patterns of malaria transmission based on serological markers for falciparum and vivax malaria in Ratanakiri, Cambodia

description: Additional file 2: Table S2. Univariate analysis of risk factors per antigen and per Plasmodium species in Ratanakiri, Cambodia (2012 and 2013).
DOI: 10.6084/m9.figshare.c.3617822_d1
title: Additional file 8: Table S1. of Characterizing the morbid genome of ciliopathies

description: List of diagnostic criteria used to clinically classify each ciliopathy. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3617777_d11
title: Additional file 5: of Contact diaries versus wearable proximity sensors in measuring contact patterns at a conference: method comparison and participantsâ   attitudes

description: Contact data â   sensors filtered (extended). (CSV 5 kb)
DOI: 10.6084/m9.figshare.c.3617777_d12
title: Additional file 6: of Contact diaries versus wearable proximity sensors in measuring contact patterns at a conference: method comparison and participantsâ   attitudes

description: Contact data â   sensors unfiltered. (CSV 6 kb)
DOI: 10.6084/m9.figshare.c.3617825_d2
title: Additional file 3: of Differences in genome-wide gene expression response in peripheral blood mononuclear cells between young and old men upon caloric restriction

description: Gene expression file with expression analysis (A) baseline, (B) response to intervention in old men compared to response to intervention in young men, and (C) genes in old towards a young expression profile. (ZIP 4761 kb)
DOI: 10.6084/m9.figshare.c.3617825_d3
title: Additional file 4: of Differences in genome-wide gene expression response in peripheral blood mononuclear cells between young and old men upon caloric restriction

description: Gene Set Enrichment Analysis outputs for (A) old men compared to young men before intervention, (B) response to intervention in young men, (C) response to intervention in old men, and (D) response to intervention in old men compared to response to intervention in young men. (ZIP 75 kb)
DOI: 10.6084/m9.figshare.c.3617777_d13
title: Additional file 9: of Contact diaries versus wearable proximity sensors in measuring contact patterns at a conference: method comparison and participantsâ   attitudes

description: Contact data â   survey. (CSV 5 kb)
DOI: 10.6084/m9.figshare.c.3617822_d3
title: Additional file 6: Table S5. of Characterizing the morbid genome of ciliopathies

description: Ciliopathy disease burden in the population for each pathogenic variant identified in known ciliopathy genes. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3617840_d1
title: Additional file 1: Table-S1. of Effect of root-extracts of Ficus benghalensis (Banyan) in memory, anxiety, muscle co-ordination and seizure in animal models

description: Step down latency (s). Table S2. Mean Step-down latency (s). Table S3. One-Way ANOVA Test- mean Step-down latency (s). Table S4. Tukey HSD post hoc tests-comparing mean Step-down latency (s). Table S5. Step down error. Table S6. Comparison of mean Step-down error. Table S7. One-Way ANOVA Test- mean Step down error. Table S8. Tukey HSD post hoc test comparing mean Step down error. Table S9. Time spent in shock zone in s. Table S10. Comparison of mean Time spent in shock-zone. Table S11. Mann–Whitney U test comparing mean time spent in shock-zone (s). Table S12. No. of squares crossed. Table S13. Comparison of mean Number of squares crossed. Table S14. One-Way ANOVA Test- Number of squares crossed. Table S15. Tukey HSD post hoc tests-comparing mean Number of squares. Table S16. Time spent in Central Square(s). Table S17. Comparison of mean Time spent in central-square(s). Table S18. Mann–Whitney U test comparing mean Time (s) spent in Central Square. Table S19. Number of rearing. Table S20. Comparison of mean Number of Rearing. Table S21. Mann-Whitney U test comparing mean number of rearing. Table S22. Total sleep time (s). Table S24. One-Way ANOVA Test- mean total sleep time in Pentobarbital-induced sleep potentiation test. Table S25. Tukey HSD post hoc tests-comparing mean total sleep time. Table S26. Fall-off time (s). Table S27. Comparison of mean Fall-off time. Table S28. Mann–Whitney U test comparing mean fall-off time. Table 29. Animals not showing seizure. Table S30. Latency of seizure onset (s). Table S31. Comparison of mean Latency of seizure-onset (s). Table S32. Mann–Whitney U test comparing mean latency (s) in PTZ-seizure model. Table S33. Animals not showing seizure. Table S34. Duration of tonic hind limb extension (s). Table S35. Comparison of mean duration of tonic hind-limb extension. Table S36. Mann–Whitney U test comparing mean duration of tonic hind limb extension. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3617855_d5
title: Additional file 2: Table S1. of SNP- and haplotype-based genome-wide association studies for growth, carcass, and meat quality traits in a Duroc multigenerational population

description: Genetic markers associated with production traits and related polymorphisms from a study of candidate genes. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3617855_d6
title: Additional file 7: Table S2. of SNP- and haplotype-based genome-wide association studies for growth, carcass, and meat quality traits in a Duroc multigenerational population

description: SNPs showing genome-wide significant and suggestive association with multiple measurements of growth, carcass, and meat quality traits. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.c.3617939_d1
title: Additional file 4: Table S4. of Differential variability and correlation of gene expression identifies key genes involved in neuronal differentiation

description: Functional enrichment of 821 differentially expressed genes from mouse ES cells. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3617933_d3
title: MOESM7 of An H4K16 histone acetyltransferase mediates decondensation of the X chromosome in C. elegans males

description: Additional file 7: Table S2. The list of mRNA-seq data sets and their GEO accession numbers, average RPKM expression levels for data sets and DESeq2 analysis results for differential expression.
DOI: 10.6084/m9.figshare.c.3617939_d2
title: Additional file 1: Table S1. of Differential variability and correlation of gene expression identifies key genes involved in neuronal differentiation

description: 315 differentially variable genes from mouse ES cells. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.c.3617933_d5
title: MOESM6 of An H4K16 histone acetyltransferase mediates decondensation of the X chromosome in C. elegans males

description: Additional file 6: Table S1. The list of ChIP-seq data sets and their GEO accession numbers.
DOI: 10.6084/m9.figshare.c.3617939_d3
title: Additional file 2: Table S2. of Differential variability and correlation of gene expression identifies key genes involved in neuronal differentiation

description: 821 differentially expressed genes from mouse ES cells. (XLSX 287 kb)
DOI: 10.6084/m9.figshare.c.3617939_d4
title: Additional file 3: Table S3. of Differential variability and correlation of gene expression identifies key genes involved in neuronal differentiation

description: 671 DVC genes from mouse ES cells. (XLSX 86 kb)
DOI: 10.5281/zenodo.14426696
title: MaRV Scripts and Datasets
DOI: 10.7294/27957756
title: Effects of peripartal rumen-derived direct-fed microbial supplementation on lactation performance, metabolism, ruminal fermentation, and microbial abundance in dairy cows

description: "Effects of peripartal rumen-derived direct-fed microbial supplementation on lactation performance, metabolism, ruminal fermentation, and microbial abundance in dairy cows." Supplementing rumen-derived direct-fed microbial (DFM) can improve forage digestibility and ruminal VFA production and consequently improve milk production and feed efficiency. The DFM used in this study was composed of <i>Clostridium beijerinckii</i> (1 x 10<sup>7</sup>), <i>Pichia kudriavzevii </i>(1 x 10<sup>8</sup>), <i>Ruminococcus</i> <i>bovis </i>(1 x 10<sup>8</sup>), <i>Butyrivibrio</i> <i>fibrisolvens</i> (1 x 10<sup>8</sup>). Rumen-derived DFM promoted positive responses in lactation performance during the post-fresh period (6 - 14 wk postpartum), such as milk yield and feed efficiency.
DOI: 10.7294/27957756.v1
title: Effects of peripartal rumen-derived direct-fed microbial supplementation on lactation performance, metabolism, ruminal fermentation, and microbial abundance in dairy cows

description: "Effects of peripartal rumen-derived direct-fed microbial supplementation on lactation performance, metabolism, ruminal fermentation, and microbial abundance in dairy cows." Supplementing rumen-derived direct-fed microbial (DFM) can improve forage digestibility and ruminal VFA production and consequently improve milk production and feed efficiency. The DFM used in this study was composed of <i>Clostridium beijerinckii</i> (1 x 10<sup>7</sup>), <i>Pichia kudriavzevii </i>(1 x 10<sup>8</sup>), <i>Ruminococcus</i> <i>bovis </i>(1 x 10<sup>8</sup>), <i>Butyrivibrio</i> <i>fibrisolvens</i> (1 x 10<sup>8</sup>). Rumen-derived DFM promoted positive responses in lactation performance during the post-fresh period (6 - 14 wk postpartum), such as milk yield and feed efficiency.
DOI: 10.6084/m9.figshare.c.3618047_d5
title: Additional file 2: of The CXCR4 antagonist plerixafor enhances the effect of rituximab in diffuse large B-cell lymphoma cell lines

description: Data used to generate Figure 1. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3618083_d2
title: Additional file 1: Table S1. of Tracking crop varieties using genotyping-by-sequencing markers: a case study using cassava (Manihot esculenta Crantz)

description: Sample information associated with the 917 accessions from three regions of Ghana and the library of known varieties from CSIR-CRI. ADMIXTURE-based ancestry estimates according to predefined eleven clusters are also provided. We have also attempted to, as far as the library is concerned, classify each of the farmersâ   accessions to their matching released varieties in the CSIR-CRI library. (XLSX 151Â kb)
DOI: 10.21227/d8ne-tf43
title: PPE Usage Dataset

description: PPE Usage DatasetThis repository provides the Personal Protective Equipment (PPE) Usage Dataset, designed for training deep neural networks (DNNs). The dataset was collected using the EFR32MG24 microcontroller and the ICM-20689 inertial measurement unit, which features a 3-axis gyroscope and a 3-axis accelerometer.The dataset includes data for four types of PPE: helmet, shirt, pants, and boots, categorized into three activity classes: carrying, still, and wearing.
DOI: 10.6084/m9.figshare.c.3618104_d5
title: Additional file 3: Table S3 of Influenza H3N2 infection of the collaborative cross founder strains reveals highly divergent host responses and identifies a unique phenotype in CAST/EiJ mice

description: Results from Tukey post-hoc HSD test for the interaction of strain:day of the ANOVA analysis from Table S2. (XLSX 83Â kb)
DOI: 10.6084/m9.figshare.c.3618167_d5
title: Additional file 8: of A multilevel pan-cancer map links gene mutations to cancer hallmarks

description: Table S1. Significant mutually exclusive (ME) and co-occurring (CO) associations across all cancer types. Genes with an asterisk (*) are significantly frequently mutated as determined by the Mutational Significance in Cancer (MuSiC) and/or Genomic Identification of Significant Targets In Cancer (GISTIC).
DOI: 10.6084/m9.figshare.c.3618218_d1
title: Additional file 3: of Clonidine for sedation in the critically ill: a systematic review and meta-analysis (protocol)

description: RCT data abstraction form. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3618218_d2
title: Additional file 2: of Clonidine for sedation in the critically ill: a systematic review and meta-analysis (protocol)

description: Observational studies data abstraction form. (DOCX 75 kb)
DOI: 10.6084/m9.figshare.c.3618287_d2
title: Additional file 7: of Transcriptome analysis and molecular marker discovery in Solanum incanum and S. aethiopicum, two close relatives of the common eggplant (Solanum melongena) with interest for breeding

description: Details of KEGG annotation (compressed folder). The files provide the names of biological pathways, number of unigenes involved, enzymes types and EC numbers of S. incanum and S. aethiopicum unigenes KEGG annotation. (7Z 56Â kb)
DOI: 10.6084/m9.figshare.c.3618269_d5
title: Additional file 5: Table S4. of TSS-EMOTE, a refined protocol for a more complete and less biased global mapping of transcription start sites in bacterial pathogens

description: Predicted operon structure based on TSS-EMOTE experimental data and in silico transcription terminator finding. Note that this table includes two sheets for A. baumannii, corresponding to two published reference genomes (ATCC 17978, and ATCC 17978-mff). (XLSX 1528 kb)
DOI: 10.6084/m9.figshare.c.3618287_d3
title: Additional file 2: of Transcriptome analysis and molecular marker discovery in Solanum incanum and S. aethiopicum, two close relatives of the common eggplant (Solanum melongena) with interest for breeding

description: List of Solanum incanum and S. aethiopicum unigenes (compressed folder). The file provides the list of the 83,905 most expressed single-copy S. incanum and 87,084 S. aethiopicum transcripts in fasta format. (7Z 29593 kb)
DOI: 10.6084/m9.figshare.c.3618269_d7
title: Additional file 1: Table S1. of TSS-EMOTE, a refined protocol for a more complete and less biased global mapping of transcription start sites in bacterial pathogens

description: Re-detection of previously identified TSSs. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3618287_d4
title: Additional file 10: of Transcriptome analysis and molecular marker discovery in Solanum incanum and S. aethiopicum, two close relatives of the common eggplant (Solanum melongena) with interest for breeding

description: ORFs and introns annotation (compressed folder). The GFF3 format file provides the ORFs and introns detected in S. incanum and S. aethiopicum unigenes. (7Z 6710Â kb)
DOI: 10.6084/m9.figshare.c.3618269_d8
title: Additional file 3: Table S2. of TSS-EMOTE, a refined protocol for a more complete and less biased global mapping of transcription start sites in bacterial pathogens

description: List of identified TSSs. Note that this table includes two sheets for A. baumannii, corresponding to two published reference genomes (ATCC 17978, and ATCC 17978-mff). (XLSX 3099 kb)
DOI: 10.6084/m9.figshare.c.3618287_d5
title: Additional file 12: of Transcriptome analysis and molecular marker discovery in Solanum incanum and S. aethiopicum, two close relatives of the common eggplant (Solanum melongena) with interest for breeding

description: Validated markers. The file provides the tables of SNPs and SSRs experimentally validated. For each marker are provided the unigene which came from, the position in the correspondent eggplant scaffold, the detected alleles and the primers used for validation. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3618287_d6
title: Additional file 8: of Transcriptome analysis and molecular marker discovery in Solanum incanum and S. aethiopicum, two close relatives of the common eggplant (Solanum melongena) with interest for breeding

description: Position in tomato reference genome (compressed folder). The file provides the physical position of S. incanum and S. aethiopicum unigenes in tomato through Blast against S. lycopersicum genome, version SL2.5. (7Z 450Â kb)