cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8115011
title: Metadata for Sensitivity of He Flames in X-ray Bursts to Nuclear Physics

description: Metadata, input files, scripts, and jupyter notebook used for the 2D X-ray burst described in paper: "Sensitivity of He Flame in X-ray Burst to Nuclear Physics". The job_info files contain the git hashes of all software used as well as the compiler versions and flags. All *front.dat contains data to generate the flame frot position vs time plot. This data can be generated using the Castro/Exec/science/flame_wave/analysis/front_tracker.py in https://github.com/AMReX-Astro/Castro. All *density.dat files contain the data for density-weighted temperature and nuclear energy generation rate plot. These data can be obtained by using the function: get_weighted_profile(), in the xrb_paper.ipynb. All *cpu.txt files contain the data to generate the number of CPU hours per simulation time plot. These data can be obtained using get_cpu_time.py. All *sum.dat files contain the data for the total mass of C12, O16, Ne20, Mg24, Si28, and S32 over time. These data can be obtained by using amrex/Tools/Plotfile/fvolumesum.cpp in https://github.com/AMReX-Codes/amrex/blob/development/Tools/Plotfile/fvolumesum.cpp.
DOI: 10.5281/zenodo.8117761
title: Metadata for Sensitivity of He Flames in X-ray Bursts to Nuclear Physics

description: Metadata, input files, scripts, and jupyter notebook used for the 2D X-ray burst described in paper: "Sensitivity of He Flame in X-ray Burst to Nuclear Physics". The job_info files contain the git hashes of all software used as well as the compiler versions and flags. All *front.dat contains data to generate the flame frot position vs time plot. This data can be generated using the Castro/Exec/science/flame_wave/analysis/front_tracker.py in https://github.com/AMReX-Astro/Castro. All *density.dat files contain the data for density-weighted temperature and nuclear energy generation rate plot. These data can be obtained by using the function: get_weighted_profile(), in the xrb_paper.ipynb. All *cpu.txt files contain the data to generate the number of CPU hours per simulation time plot. These data can be obtained using get_cpu_time.py. All *sum.dat files contain the data for the total mass of C12, O16, Ne20, Mg24, Si28, and S32 over time. These data can be obtained by using amrex/Tools/Plotfile/fvolumesum.cpp in https://github.com/AMReX-Codes/amrex/blob/development/Tools/Plotfile/fvolumesum.cpp.
DOI: 10.5281/zenodo.8117748
title: MechRepoNet with DrugCentral Indications Knowledge Graph

description: <em><strong>M</strong></em>echanistic Repositioning Network with <em><strong>Ind</strong></em>ications (MIND) is a knowledge graph incorporating two biomedical resources: MechRepoNet and DrugCentral. MechRepoNet is a knowledge graph comprising of 18 biomedical resources that reflects and expands on important drug mechanism relationships identified from a curated biomedical drug mechanism dataset. MechRepoNet consists of 9,652,116 edges, 250,035 nodes, 9 node types and 22 relations. DrugCentral is a curated, open-access, online resource that integrates structure, bioactivity, regulatory, pharmacologic actions and approved drug indications from the FDA and other regulatory agencies. As of October 2021, DrugCentral has 11,292 indications, consisting of 2,494 unique compounds and 1,459 unique diseases. MIND was created by mapping DrugCentral edges to existing MechRepoNet nodes through the Unified Medical Language System (UMLS) and Medical Subject Headings (MeSH). A total of 5,379 indication edges made up of 1,308 unique compounds and 1,030 unique diseases were mapped to MechRepoNet. DrugCentral edges incorporated in MIND are labeled have the relationship indication. The indication edge is differentiated from the treat edge in that the latter represents a weaker link between a drug and a disease as some treat edges are not approved by a regulatory body in contrast to the former. In MIND, when both indication and treat edges exist, indication superseded and replaced treat edges. The MIND training set has a total of 9,651,040 edges. The indications from DrugCentral were divided into a train set (80%; 4303 triples) and a test/valid set (20%; 1076 triples; test.txt/valid.txt). The DrugCentral train set was merged into MechRepoNet to form the train.txt file.
DOI: 10.5281/zenodo.8117747
title: MechRepoNet with DrugCentral Indications Knowledge Graph

description: <em><strong>M</strong></em>echanistic Repositioning Network with <em><strong>Ind</strong></em>ications (MIND) is a knowledge graph incorporating two biomedical resources: MechRepoNet and DrugCentral. MechRepoNet is a knowledge graph comprising of 18 biomedical resources that reflects and expands on important drug mechanism relationships identified from a curated biomedical drug mechanism dataset. MechRepoNet consists of 9,652,116 edges, 250,035 nodes, 9 node types and 22 relations. DrugCentral is a curated, open-access, online resource that integrates structure, bioactivity, regulatory, pharmacologic actions and approved drug indications from the FDA and other regulatory agencies. As of October 2021, DrugCentral has 11,292 indications, consisting of 2,494 unique compounds and 1,459 unique diseases. MIND was created by mapping DrugCentral edges to existing MechRepoNet nodes through the Unified Medical Language System (UMLS) and Medical Subject Headings (MeSH). A total of 5,379 indication edges made up of 1,308 unique compounds and 1,030 unique diseases were mapped to MechRepoNet. DrugCentral edges incorporated in MIND are labeled have the relationship indication. The indication edge is differentiated from the treat edge in that the latter represents a weaker link between a drug and a disease as some treat edges are not approved by a regulatory body in contrast to the former. In MIND, when both indication and treat edges exist, indication superseded and replaced treat edges. The MIND training set has a total of 9,651,040 edges. The indications from DrugCentral were divided into a train set (80%; 4303 triples) and a test/valid set (20%; 1076 triples; test.txt/valid.txt). The DrugCentral train set was merged into MechRepoNet to form the train.txt file.
DOI: 10.6084/m9.figshare.23631330
title: X-ray Egg Ejection Data for Wild Type and Pmyo-3::lite-1 Worms in Response to 1 Gy/s X-rays

description: EggsEjected.mat contains a 10x2 matrix containing numbers of eggs ejected by wild type and pmyo-3::lite-1 worms during a 10 s exposure to 1 Gy/s X-ray stimulation. The values in the first column correspond to eggs ejected by wild type worms, while the values in the second column correspond to eggs ejected by pmyo-3::lite-1 worms.
DOI: 10.6084/m9.figshare.23631330.v1
title: X-ray Egg Ejection Data for Wild Type and Pmyo-3::lite-1 Worms in Response to 1 Gy/s X-rays

description: EggsEjected.mat contains a 10x2 matrix containing numbers of eggs ejected by wild type and pmyo-3::lite-1 worms during a 10 s exposure to 1 Gy/s X-ray stimulation. The values in the first column correspond to eggs ejected by wild type worms, while the values in the second column correspond to eggs ejected by pmyo-3::lite-1 worms.
DOI: 10.5281/zenodo.7632695
title: Methods (psychrometric and regression) to calculate wet-bulb temperature, and monthly oceanic rainfall sensible heat flux

description: This upload includes: 1) a lookup table for computing wet-bulb temperature using the psychrometric method, 2) difference between wet-bulb temperature computed using the psychrometric method and the regression method, and 3) monthly mean oceanic rainfall sensible heat flux for the period 2005–14.
description: {"references": ["Ibrahim H. D. and Sun Y. (2023). Sea-surface cooling by rainfall modulates Earth's heat energy flow."]}
DOI: 10.5281/zenodo.7632694
title: Methods (psychrometric and regression) to calculate wet-bulb temperature, and monthly oceanic rainfall sensible heat flux

description: This upload includes: 1) a lookup table for computing wet-bulb temperature using the psychrometric method, 2) difference between wet-bulb temperature computed using the psychrometric method and the regression method, and 3) monthly mean oceanic rainfall sensible heat flux for the period 2005–14.
description: {"references": ["Ibrahim H. D. and Sun Y. (2023). Sea-surface cooling by rainfall modulates Earth's heat energy flow."]}
DOI: 10.48331/scielo.y2yr1c/xuhvip
title: 20230405_Rita Argollo.pdf

description: :unav
DOI: 10.48331/scielo.y2yr1c
title: O livro acadêmico e a dinâmica científica

description: Apresentação de Rita Virginia Argollo no Seminário ABEU – SciELO 25 Anos: O livro acadêmico e a dinâmica científica. Página do evento: https://25.scielo.org/seminarios/abeu/
DOI: 10.34740/kaggle/dsv/6085335
title: SEE SLMHM SPEM
DOI: 10.6073/pasta/4ef97cf4634564ce6d199fb624155bd9
title: Marcell Experimental Forest 10-minute soil temperature and moisture, 2008 - ongoing

description: This data set is a record of soil temperature and volumetric water content (soil moisture) on two upland mineral soil hillslopes at the Marcell Experimental Forest (MEF) in Itasca County, Minnesota. These data are collected as part of the long-term monitoring program at the S2 catchment, which has 6.5 ha of upland mineral soil that surrounds a central 3.2 ha peatland. Soil temperature and moisture are recorded every 10 minutes since 2008 at S2S, a north-facing hillslope that is south of the S2 bog. Measurements at S2N, a south-facing hillslope that is north of the S2 bog, began during 2009. Measurements were recorded at two depths at each of three different relative positions (downslope, mid-slope, and upslope) on the two hillslopes. The MEF is operated and maintained by the USDA Forest Service, Northern Research Station.
DOI: 10.34740/kaggle/dsv/6085332
title: ☕Nespresso Coffee Pods Dataset
DOI: 10.57745/difhiy
title: data.zip

description: Version des données : 25 mai 2022
DOI: 10.57745/rmfcna
title: OntoBiotope.obo

description: Version des données : 25 mai 2022
DOI: 10.57745/tr0cns
title: README.docx

description: :unav
DOI: 10.57745/v9spw3
title: taxid_microorganisms.tsv.zip

description: Version des données : 25 mai 2022
DOI: 10.18112/openneuro.ds004408.v1.0.7
title: Invariant encoding of phonemes in neural responses to continuous speech
DOI: 10.34683/sr85
title: StoneRounds Case: SR85
title: Type 1 Usher Syndrome

description: StoneRounds Case SR85 was diagnosed with Type 1 Usher Syndrome likely caused by mutations in the gene: MYO7A.
DOI: 10.5281/zenodo.8117820
title: myoblast 0h APF

description: bulk RNAseq date from drosophila leg disc myoblast 0h APF
DOI: 10.5281/zenodo.8117847
title: myoblast 0h APF

description: bulk RNAseq date from drosophila leg disc myoblast 0h APF
DOI: 10.5281/zenodo.8117819
title: myoblast 0h APF

description: bulk RNAseq date from drosophila leg disc myoblast 0h APF
DOI: 10.5281/zenodo.8117851
title: myoblast 0h APF

description: bulk RNAseq date from drosophila leg disc myoblast 0h APF
DOI: 10.5281/zenodo.8117754
title: Data repository Childprogramming + Debugging + Robotics

description: Este repositorio de datos alberga información sobre las investigaciones realizadas en el marco de dos investigaciones relacionadas y centradas en el fomento del pensamiento computacional en la educación primaria mediante la metodología Childprogramming. El repositorio sirve de eje central para almacenar y organizar datos valiosos relativos a la aplicación de conceptos de depuración y robótica educativa. Contiene información relativa a los proyectos realizados en este ámbito. Incluye los resultados de los casos de estudio aplicados.
DOI: 10.5281/zenodo.8117753
title: Data repository Childprogramming + Debugging + Robotics

description: Este repositorio de datos alberga información sobre las investigaciones realizadas en el marco de dos investigaciones relacionadas y centradas en el fomento del pensamiento computacional en la educación primaria mediante la metodología Childprogramming. El repositorio sirve de eje central para almacenar y organizar datos valiosos relativos a la aplicación de conceptos de depuración y robótica educativa. Contiene información relativa a los proyectos realizados en este ámbito. Incluye los resultados de los casos de estudio aplicados.
DOI: 10.6084/m9.figshare.23631357
title: <em><strong>Eoscyphella luxurceolata</strong></em><strong> gen. et sp. nov. </strong>

description: ITS rDNA alignment and MV tree, LSU rDNA alignment and MV tree, combined ITS rDNA + LSU rDNA alignment and tree.
DOI: 10.6084/m9.figshare.23631357.v1
title: <em><strong>Eoscyphella luxurceolata</strong></em><strong> gen. et sp. nov. </strong>

description: ITS rDNA alignment and MV tree, LSU rDNA alignment and MV tree, combined ITS rDNA + LSU rDNA alignment and tree.
DOI: 10.6084/m9.figshare.21947681.v1
title: Metadata and amino acid sequence comparison

description: West Nile virus lineage 1 metadata used for phylogenetic (S1 Table) and phylogegraphic (S2 Table) analyses, and amino acid sequence comparison (S3 Table)
DOI: 10.6073/pasta/b8f71d0aa6280616c56fb64432a17082
title: Marcell Experimental Forest biweekly snow depth, frost depth, and snow water equivalent, 1962 - ongoing

description: This data table contains snowpack and frost data measured at the Marcell Experimental Forest from 1962–ongoing. The data came from five peatland/upland forest watersheds instrumented for hydrologic monitoring. Frost thickness and snowpack (snow water content, snowpack depth) are measured at 10 snowcourses that encompass three cover types (conifer, deciduous, open). The Marcell Experimental Forest in Itasca County, Minnesota, is operated and maintained by the USDA Forest Service, Northern Research Station, and was formally established in 1962 to study the ecology and hydrology of peatlands.
DOI: 10.34740/kaggle/dsv/6074504
title: Formula 2 Championship (updated after every race)
DOI: 10.5517/ccdc.csd.cc2dcmgw
title: CCDC 2215708: Experimental Crystal Structure Determination

description: Related Article: Yingyu Li|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2df4kk
title: CCDC 2217168: Experimental Crystal Structure Determination

description: Related Article: Yingyu Li|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2flv0x
title: CCDC 2252429: Experimental Crystal Structure Determination

description: Related Article: Chen Wang, Ruimin Tang, Chong Wan, Zhao Qin, Suhang Chen, Kangzhen Xu|2023|J.Mol.Struct.|1291|136066|doi:10.1016/j.molstruc.2023.136066
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2flv2z
title: CCDC 2252431: Experimental Crystal Structure Determination

description: Related Article: Chen Wang, Ruimin Tang, Chong Wan, Zhao Qin, Suhang Chen, Kangzhen Xu|2023|J.Mol.Struct.|1291|136066|doi:10.1016/j.molstruc.2023.136066
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fcy0s
title: CCDC 2245795: Experimental Crystal Structure Determination

description: Related Article: Xinyue Shang, Mingwei Fu, Zhuoer Cai, Lai Wei, Shuwang Ge, Min Ge, Yihong Wang|2023|J.Mol.Struct.|1288|135786|doi:10.1016/j.molstruc.2023.135786
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fr06f
title: CCDC 2256434: Experimental Crystal Structure Determination

description: Related Article: N. Kanagathara, M. Thirunavukkarasu, S. Selvaraj, A. Ram Kumar, M.K. Marchewka, Jan Janczak|2023|J.Mol.Liq.|385|122315|doi:10.1016/j.molliq.2023.122315
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fprhd
title: CCDC 2255234: Experimental Crystal Structure Determination

description: Related Article: Shan-Xian He, Huan-Huan Yu, Chao Huang, Dong-Mei Chen, Bi-Xue Zhu|2023|J.Mol.Struct.|1291|136073|doi:10.1016/j.molstruc.2023.136073
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fprjf
title: CCDC 2255235: Experimental Crystal Structure Determination

description: Related Article: Shan-Xian He, Huan-Huan Yu, Chao Huang, Dong-Mei Chen, Bi-Xue Zhu|2023|J.Mol.Struct.|1291|136073|doi:10.1016/j.molstruc.2023.136073
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fprkg
title: CCDC 2255236: Experimental Crystal Structure Determination

description: Related Article: Shan-Xian He, Huan-Huan Yu, Chao Huang, Dong-Mei Chen, Bi-Xue Zhu|2023|J.Mol.Struct.|1291|136073|doi:10.1016/j.molstruc.2023.136073
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fprlh
title: CCDC 2255237: Experimental Crystal Structure Determination

description: Related Article: Shan-Xian He, Huan-Huan Yu, Chao Huang, Dong-Mei Chen, Bi-Xue Zhu|2023|J.Mol.Struct.|1291|136073|doi:10.1016/j.molstruc.2023.136073
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fprmj
title: CCDC 2255238: Experimental Crystal Structure Determination

description: Related Article: Shan-Xian He, Huan-Huan Yu, Chao Huang, Dong-Mei Chen, Bi-Xue Zhu|2023|J.Mol.Struct.|1291|136073|doi:10.1016/j.molstruc.2023.136073
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fprnk
title: CCDC 2255239: Experimental Crystal Structure Determination

description: Related Article: Shan-Xian He, Huan-Huan Yu, Chao Huang, Dong-Mei Chen, Bi-Xue Zhu|2023|J.Mol.Struct.|1291|136073|doi:10.1016/j.molstruc.2023.136073
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.23631489
title: Aggregation pheromone in a triatomine: chemical data

description: These data include the following: <br> - Bioassays with extracts. xlsx This file contains data from insect choices in bioassays using extracts, for both non- infected, and T. cruzi infected insects. We used adults and nymphs in both types of bioassays, Y- tube bioassay and box (rectangular cage) bioassays <br> - Chemical analyses.xlsx This file contains the identification and quantitation of compounds found in the dynamic aeration collections. Additionally, a sheet with the SPME data is showed <br> - Bioassays using standards.xlsx This file contains the information of bioassays using standards and blends of standards in Y-tube and rectangular cage (box) bioassays. Additionally, it contains the information of semifield bioassays
DOI: 10.6084/m9.figshare.23631503
title: Identification cloning and functional analysis of novel natural antisense lncRNA CFL1-AS1 in cattle

description: Long noncoding RNAs have been identified as important regulators of gene expression and animal development. The expression of natural antisense transcripts (NATs) transcribed in the opposite direction to protein-coding genes is usually positively correlated with the expression of homologous sense genes and is the key factor for expression. Here, we identified a conserved noncoding antisense transcript, CFL1-AS1, that plays an important role in muscle growth and development. CFL1-AS1 overexpression and knockout vectors were constructed and transfected into 293T and C2C12 cells. CFL1-AS1 positively regulated CFL1 gene expression, and the expression of CFL2 was also downregulated when CFL1-AS1 was knocked down. CFL1-AS1 promoted cell proliferation, inhibited apoptosis and participated in autophagy. This study expands the research on NATs in cattle and lays a foundation for the study of the biological function of bovine CFL1 and its natural antisense chain transcript CFL1-AS1 in bovine skeletal muscle development. The discovery of this NAT can provide a reference for subsequent genetic breeding and data on the characteristics and functional mechanisms of NATs.