cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1436095.v5
title: Modeling the spatial dynamics of the Atlantic forest cover in Trajano de Moraes, Brazil

description: We mapped forest cover of Trajano de Moraes in five timeslots between years 1978 and 2014, and used the weights of evidence method for modeling spatial dynamics of this landscape, to understand where natural regeneration is occurring and which are the main factors related to this phenomenon. In forest cover maps, value 2 stands for class "Atlantic forest" and value 1 stands for class "matrix".
DOI: 10.6084/m9.figshare.1436073.v2
title: A new endothiodont dicynodont (Therapsida, Anomodontia) from the Permian Ruhuhu Formation (Songea Group) of Tanzania and its feeding system

description: ABSTRACTCranial material of the dicynodont <i>Endothiodon</i> from the middle fossiliferous horizon of the Permian Ruhuhu Formation (Ruhuhu Basin, Tanzania) is described as a new species, <i>E. tolani</i>. <i>Endothiodon tolani</i> is distinguished from other <i>Endothiodon</i> species by the absence of a pineal boss and the presence of tusks in most specimens. Although some parts of the Ruhuhu Formation probably correlate with the <i>Eodicynodon</i> or <i>Tapinocephalus</i> assemblage zones of the South African Karoo Basin, it is uncertain whether <i>E. tolani</i> is older than <i>E. bathystoma</i> or <i>E. mahalanobisi</i>. There is less evidence for extensive anteroposterior translation of the mandible in <i>E. tolani</i> than in other dicynodonts. The jaw joint is specialized for allowing some medial-lateral motion. Mastication involved unilateral chewing. Flexure of the postdentary bones relative to the fused dentaries permitted the posterolaterally directed rows of teeth on one side of the skull and mandible to move past one another. The long tooth rows and prominent horn-covered ridges and grooves on the palate and mandible of <i>Endothiodon</i> are unique among dicynodonts. Comparisons with other taxa suggest that its feeding system may have been specialized for cutting three-dimensional objects such as stems or rhizomes. The dicynodont feeding system is very stereotyped throughout the clade's history, but <i>Endothiodon</i> escaped the constraints that affected other dicynodonts, allowing it to evolve a unique skull morphology. This evolutionary flexibility did not translate into high taxonomic richness (we recognize only three species of <i>Endothiodon</i>), but <i>Endothiodon</i> was able to achieve high levels of relative abundance in some basins.http://zoobank.org/urn:lsid:zoobank.org:pub:9686F708-2E6E-40EB-956F-05659889684FSUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP
DOI: 10.6084/m9.figshare.1436063
title: Distance time plots for computational simulations of VALIIC/ McWhirter solar atmospheric model.

description: Distance time plots for computational simulations of VALIIC McWhirter solar atmospheric model. Membrane acoustic driver. Data for 00, 01, 02, 03 modes for 300s and 180s drivers. The plots show the distance time plots for different vertical and horizontal sections through the computational models. Plots for 180s and 300s drivers are generated by the following https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_180s.m https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_300s.m
DOI: 10.6084/m9.figshare.1436073.v1
title: A new endothiodont dicynodont (Therapsida, Anomodontia) from the Permian Ruhuhu Formation (Songea Group) of Tanzania and its feeding system

description: ABSTRACTCranial material of the dicynodont <i>Endothiodon</i> from the middle fossiliferous horizon of the Permian Ruhuhu Formation (Ruhuhu Basin, Tanzania) is described as a new species, <i>E. tolani</i>. <i>Endothiodon tolani</i> is distinguished from other <i>Endothiodon</i> species by the absence of a pineal boss and the presence of tusks in most specimens. Although some parts of the Ruhuhu Formation probably correlate with the <i>Eodicynodon</i> or <i>Tapinocephalus</i> assemblage zones of the South African Karoo Basin, it is uncertain whether <i>E. tolani</i> is older than <i>E. bathystoma</i> or <i>E. mahalanobisi</i>. There is less evidence for extensive anteroposterior translation of the mandible in <i>E. tolani</i> than in other dicynodonts. The jaw joint is specialized for allowing some medial-lateral motion. Mastication involved unilateral chewing. Flexure of the postdentary bones relative to the fused dentaries permitted the posterolaterally directed rows of teeth on one side of the skull and mandible to move past one another. The long tooth rows and prominent horn-covered ridges and grooves on the palate and mandible of <i>Endothiodon</i> are unique among dicynodonts. Comparisons with other taxa suggest that its feeding system may have been specialized for cutting three-dimensional objects such as stems or rhizomes. The dicynodont feeding system is very stereotyped throughout the clade's history, but <i>Endothiodon</i> escaped the constraints that affected other dicynodonts, allowing it to evolve a unique skull morphology. This evolutionary flexibility did not translate into high taxonomic richness (we recognize only three species of <i>Endothiodon</i>), but <i>Endothiodon</i> was able to achieve high levels of relative abundance in some basins.http://zoobank.org/urn:lsid:zoobank.org:pub:9686F708-2E6E-40EB-956F-05659889684FSUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP
DOI: 10.6084/m9.figshare.1436063.v2
title: distancetimeplots

description: Distance time plots for computational simulations of VALIIC McWhirter solar atmospheric model. Membrane acoustic driver. Data for 00, 01, 02, 03 modes for 300s and 180s drivers. The plots show the distance time plots for different vertical and horizontal sections through the computational models. Plots for 180s and 300s drivers are generated by the following https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_180s.m https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_300s.m
DOI: 10.6084/m9.figshare.1436063.v3
title: distancetimeplots

description: Distance time plots for computational simulations of VALIIC McWhirter solar atmospheric model. Membrane acoustic driver. Data for 00, 01, 02, 03 modes for 300s and 180s drivers. The plots show the distance time plots for different vertical and horizontal sections through the computational models. Plots for 180s and 300s drivers are generated by the following https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_180s.m https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_300s.m
DOI: 10.5281/zenodo.3762390
title: Seafloor Density Measurements, Prediction, and Associated Uncertainty for "Predicting global marine sediment density using the random forest regressor machine learning algorithm"

description: Global seafloor density prediction results using the random forest regressor machine learning algorithm. Dataset S1. Seafloor density measurements. Columns are labeled with a header and include associated drilling project and measurement type for each sample. File format: CSV text file Dataset S2. Seafloor density prediction results from the random forest regressor machine learning algorithm at 5×5-arc minute resolution. Units are g/cm^3. File format: netCDF (.nc) Dataset S3. Seafloor density prediction standard deviation from the random forest regressor machine learning algorithm at 5×5-arc minute resolution. Units are g/cm^3. File format: netCDF (.nc)
DOI: 10.6084/m9.figshare.1436063.v4
title: distancetimeplots

description: Distance time plots for computational simulations of VALIIC McWhirter solar atmospheric model. Membrane acoustic driver. Data for 00, 01, 02, 03 modes for 300s and 180s drivers. The plots show the distance time plots for different vertical and horizontal sections through the computational models. Plots for 180s and 300s drivers are generated by the following https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_180s.m https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_300s.m
DOI: 10.5281/zenodo.3762389
title: Seafloor Density Measurements, Prediction, and Associated Uncertainty for "Predicting global marine sediment density using the random forest regressor machine learning algorithm"

description: Global seafloor density prediction results using the random forest regressor machine learning algorithm. Dataset S1. Seafloor density measurements. Columns are labeled with a header and include associated drilling project and measurement type for each sample. File format: CSV text file Dataset S2. Seafloor density prediction results from the random forest regressor machine learning algorithm at 5×5-arc minute resolution. Units are g/cm^3. File format: netCDF (.nc) Dataset S3. Seafloor density prediction standard deviation from the random forest regressor machine learning algorithm at 5×5-arc minute resolution. Units are g/cm^3. File format: netCDF (.nc)
DOI: 10.6084/m9.figshare.1436063.v5
title: distancetimeplots

description: Distance time plots for computational simulations of VALIIC McWhirter solar atmospheric model. Membrane acoustic driver. Data for 00, 01, 02, 03 modes for 300s and 180s drivers. The plots show the distance time plots for different vertical and horizontal sections through the computational models. Plots for 180s and 300s drivers are generated by the following https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_180s.m https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_300s.m
DOI: 10.6084/m9.figshare.1436063.v6
title: distancetimeplots

description: Distance time plots for computational simulations of VALIIC McWhirter solar atmospheric model. Membrane acoustic driver. Data for 00, 01, 02, 03 modes for 300s and 180s drivers. The plots show the distance time plots for different vertical and horizontal sections through the computational models. Plots for 180s and 300s drivers are generated by the following https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_180s.m https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_300s.m
DOI: 10.6084/m9.figshare.1436063.v7
title: distancetimeplots

description: Distance time plots for computational simulations of VALIIC McWhirter solar atmospheric model. Membrane acoustic driver. Data for 00, 01, 02, 03 modes for 300s and 180s drivers. The plots show the distance time plots for different vertical and horizontal sections through the computational models. Plots for 180s and 300s drivers are generated by the following https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_180s.m https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_300s.m
DOI: 10.6084/m9.figshare.1436063.v8
title: distancetimeplots

description: Distance time plots for computational simulations of VALIIC McWhirter solar atmospheric model. Membrane acoustic driver. Data for 00, 01, 02, 03 modes for 300s and 180s drivers. The plots show the distance time plots for different vertical and horizontal sections through the computational models. Plots for 180s and 300s drivers are generated by the following https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_180s.m https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_300s.m
DOI: 10.6084/m9.figshare.1436063.v9
title: distancetimeplots

description: Distance time plots for computational simulations of VALIIC McWhirter solar atmospheric model. Membrane acoustic driver. Data for 00, 01, 02, 03 modes for 300s and 180s drivers. The plots show the distance time plots for different vertical and horizontal sections through the computational models. Plots for 180s and 300s drivers are generated by the following https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_180s.m https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_300s.m
DOI: 10.6084/m9.figshare.1436063.v10
title: Distance time plots for computational simulations of VALIIC/ McWhirter solar atmospheric model.

description: Distance time plots for computational simulations of VALIIC McWhirter solar atmospheric model. Membrane acoustic driver. Data for 00, 01, 02, 03 modes for 300s and 180s drivers. The plots show the distance time plots for different vertical and horizontal sections through the computational models. Plots for 180s and 300s drivers are generated by the following https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_180s.m https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_300s.m
DOI: 10.6084/m9.figshare.1436063.v11
title: Distance time plots for computational simulations of VALIIC/ McWhirter solar atmospheric model.

description: Distance time plots for computational simulations of VALIIC McWhirter solar atmospheric model. Membrane acoustic driver. Data for 00, 01, 02, 03 modes for 300s and 180s drivers. The plots show the distance time plots for different vertical and horizontal sections through the computational models. Plots for 180s and 300s drivers are generated by the following https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_180s.m https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_300s.m
DOI: 10.6084/m9.figshare.1435979
title: motor imagery and reflective thinking in sleep onset, non-REM, and REM sleep

description: Motor imagery and reflective thinking as measured by quantitative linguistic motor agency, and cognitive agency analyise of sleep onset, non-REM, and REM sleep reports.
DOI: 10.6084/m9.figshare.1435934
title: supporting data

description: supporting data
DOI: 10.6084/m9.figshare.1435933
title: The insula communicates tactile prediction error throughout a hierarchy of sensory and prefrontal areas

description: Embodied awareness is the pervasive, multimodal self-awareness that is thought to form the foundation of emotion. This awareness was recently proposed to rely on the anterior insular cortex (AIC) comparing expected and actual bodily signals arising in prefrontal and sensory cortices. To investigate this possibility in the somatosensory domain, we measured brain activity using functional magnetic resonance imaging while healthy human participants discriminated tactile stimuli varying in intensity and predictability. Dynamic Causal Modelling revealed that unexpected stimuli increased the strength of forward connections in a caudal to rostral ascending hierarchy from thalamic and somatosensory regions towards insula, cingulate and prefrontal cortices, consistent with hierarchical predictive coding. Within this feed-forward flow of neural coupling, the AIC increased both forwards and backwards connections to prefrontal and somatosensory cortex, supporting a comparator role. Further, we found that greater prefrontal to AIC connectivity predicted subjective ratings of stimulus discrimination difficulty. Importantly, AIC responses were insensitive to the intensity of deviants, in contrast to the posterior insula, second somatosensory and mid-cingulate cortex which responded preferentially to intense, unexpected stimuli. These results are interpreted in light of embodied predictive coding, suggesting that the AIC coordinates global cortical processing of tactile changes to support body awareness.
DOI: 10.6084/m9.figshare.1435931
title: data R2

description: data R2
DOI: 10.6084/m9.figshare.1435934.v1
title: supporting data

description: supporting data
DOI: 10.6084/m9.figshare.1435931.v1
title: data R2

description: data R2
DOI: 10.6084/m9.figshare.1435933.v1
title: Tactile Prediction Error

description: Folder for sharing data and figures from my tactile prediction error project.
DOI: 10.6084/m9.figshare.1435933.v3
title: The insula communicates tactile prediction error throughout a hierarchy of sensory and prefrontal areas

description: Embodied awareness is the pervasive, multimodal self-awareness that is thought to form the foundation of emotion. This awareness was recently proposed to rely on the anterior insular cortex (AIC) comparing expected and actual bodily signals arising in prefrontal and sensory cortices. To investigate this possibility in the somatosensory domain, we measured brain activity using functional magnetic resonance imaging while healthy human participants discriminated tactile stimuli varying in intensity and predictability. Dynamic Causal Modelling revealed that unexpected stimuli increased the strength of forward connections in a caudal to rostral ascending hierarchy from thalamic and somatosensory regions towards insula, cingulate and prefrontal cortices, consistent with hierarchical predictive coding. Within this feed-forward flow of neural coupling, the AIC increased both forwards and backwards connections to prefrontal and somatosensory cortex, supporting a comparator role. Further, we found that greater prefrontal to AIC connectivity predicted subjective ratings of stimulus discrimination difficulty. Importantly, AIC responses were insensitive to the intensity of deviants, in contrast to the posterior insula, second somatosensory and mid-cingulate cortex which responded preferentially to intense, unexpected stimuli. These results are interpreted in light of embodied predictive coding, suggesting that the AIC coordinates global cortical processing of tactile changes to support body awareness.
DOI: 10.6084/m9.figshare.1435933.v2
title: The insula communicates tactile prediction error throughout a hierarchy of sensory and prefrontal areas

description: Embodied awareness is the pervasive, multimodal self-awareness that is thought to form the foundation of emotion. This awareness was recently proposed to rely on the anterior insular cortex (AIC) comparing expected and actual bodily signals arising in prefrontal and sensory cortices. To investigate this possibility in the somatosensory domain, we measured brain activity using functional magnetic resonance imaging while healthy human participants discriminated tactile stimuli varying in intensity and predictability. Dynamic Causal Modelling revealed that unexpected stimuli increased the strength of forward connections in a caudal to rostral ascending hierarchy from thalamic and somatosensory regions towards insula, cingulate and prefrontal cortices, consistent with hierarchical predictive coding. Within this feed-forward flow of neural coupling, the AIC increased both forwards and backwards connections to prefrontal and somatosensory cortex, supporting a comparator role. Further, we found that greater prefrontal to AIC connectivity predicted subjective ratings of stimulus discrimination difficulty. Importantly, AIC responses were insensitive to the intensity of deviants, in contrast to the posterior insula, second somatosensory and mid-cingulate cortex which responded preferentially to intense, unexpected stimuli. These results are interpreted in light of embodied predictive coding, suggesting that the AIC coordinates global cortical processing of tactile changes to support body awareness.
DOI: 10.6084/m9.figshare.1435900
title: A putative multicopper oxidase, IoxA, is involved in iodide oxidation by <i>Roseovarius</i> sp. strain A-2

description: Graphical abstractIodide oxidation by <i>Roseovarius</i> sp. strain A-2 grown on Marine Agar 2216 medium supplemented with iodide, starch and Cu<sup>2+</sup>.
DOI: 10.6084/m9.figshare.1435883
title: Data: Time-scale dependency of host plant biomass- and trait-mediated indirect effects of deer herbivory on a swallowtail butterfly

description: Takagi and Miyashita "Time-scale dependency of host plant biomass- and trait-mediated indirect effects of deer herbivory on a swallowtail butterfly" Journal of Animal Ecology Dataset for the surveys on <em>Aristolochia kaempferi</em> and <em>Byasa alcinous.</em> see also the script file: http://dx.doi.org/10.6084/m9.figshare.1435882
DOI: 10.6084/m9.figshare.1435900.v2
title: A putative multicopper oxidase, IoxA, is involved in iodide oxidation by <i>Roseovarius</i> sp. strain A-2

description: Graphical abstractIodide oxidation by <i>Roseovarius</i> sp. strain A-2 grown on Marine Agar 2216 medium supplemented with iodide, starch and Cu<sup>2+</sup>.
DOI: 10.6084/m9.figshare.1435900.v1
title: A putative multicopper oxidase, IoxA, is involved in iodide oxidation by <i>Roseovarius</i> sp. strain A-2

description: Graphical abstractIodide oxidation by <i>Roseovarius</i> sp. strain A-2 grown on Marine Agar 2216 medium supplemented with iodide, starch and Cu<sup>2+</sup>.
DOI: 10.6084/m9.figshare.1435883.v1
title: Data: Time-scale dependency of host plant biomass- and trait-mediated indirect effects of deer herbivory on a swallowtail butterfly

description: Takagi and Miyashita "Time-scale dependency of host plant biomass- and trait-mediated indirect effects of deer herbivory on a swallowtail butterfly" Journal of Animal Ecology Dataset for the surveys on <em>Aristolochia kaempferi</em> and <em>Byasa alcinous.</em> see also the script file: http://dx.doi.org/10.6084/m9.figshare.1435882
DOI: 10.6084/m9.figshare.1434692.v1
title: Administration of progranulin (PGRN) triggers ER stress and impairs insulin sensitivity via PERK-eIF2α-dependent manner

description: Progranulin (PGRN) has recently emerged as an important regulator for glucose metabolism and insulin sensitivity. However, the direct effects of PGRN <i>in vivo</i> and the underlying mechanisms between PGRN and impaired insulin sensitivity are not fully understood. In this study, mice treated with PGRN for 21 days exhibited the impaired glucose tolerance and insulin sensitivity, remarkable ER stress as well as attenuated insulin signaling in liver and adipose tissue but not in skeletal muscle. Furthermore, treatment of mice with phenyl butyric acid (PBA), a chemical chaperone alleviating ER stress, resulted in a significant restoration of systemic insulin sensitivity and recovery of insulin signaling induced by PGRN. Consistent with these findings <i>in vivo</i>, we also observed that PGRN treatment induced ER stress, impaired insulin signaling in cultured hepatocytes and adipocytes, with such effects being partially nullified by blockade of PERK. Whereas PGRN-deficient hepatocytes and adipocytes were more refractory to palmitate-induced insulin resistance, indicating the causative role of the PERK-eIF2α axis of the ER stress response in action of PGRN. Collectively, our findings supported the notion that PGRN is a key regulator of insulin resistance and that PGRN may mediate its effects, at least in part, by inducing ER stress via the PERK-eIF2α dependent pathway.