cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5954860.v1
title: Additional file 1: of Characterization of the human RFX transcription factor family by regulatory and target gene analysis

description: Detailed expression values (TPM) for RFX TSS locations. Expression values in tags per million (TPM) for all 30 RFX TSS locations in all 889 biological samples and their categorization into tissues (135), primary cells (473 donor replicates and 170 merged replicates from the average TPM value of the donor replicates), cell lines (255) and time courses (26). (XLSX 355 kb)
DOI: 10.6084/m9.figshare.5954836
title: Dataset for: A comparison of approaches for simultaneous inference of fixed effects for multiple outcomes using linear mixed models

description: Longitudinal studies with multiple outcomes often pose challenges for the statistical analysis. A joint model including all outcomes has the advantage of incorporating the simultaneous behavior but is often difficult to fit due to computational challenges. We consider two alternative approaches in order to quantify and assess the loss in efficiency as compared to joint modelling when evaluating fixed effects. The first approach is pairwise fitting of pseudo-likelihood functions for pairs of outcomes. The second approach recovers correlations between parameter estimates across multiple marginal linear mixed models. The methods are evaluated both in terms of a data example from a study on the effects of milk protein on health in young adolescents and in an extensive simulation study. We find that the two alternatives give similar results in settings where an exchangeability condition is met, but otherwise pairwise fitting shows a larger loss in efficiency than the marginal models approach. Using an alternative to the joint modelling strategy will lead to some but not necessarily a large loss of efficiency for small sample sizes.
DOI: 10.6084/m9.figshare.5954836.v1
title: Dataset for: A comparison of approaches for simultaneous inference of fixed effects for multiple outcomes using linear mixed models

description: Longitudinal studies with multiple outcomes often pose challenges for the statistical analysis. A joint model including all outcomes has the advantage of incorporating the simultaneous behavior but is often difficult to fit due to computational challenges. We consider two alternative approaches in order to quantify and assess the loss in efficiency as compared to joint modelling when evaluating fixed effects. The first approach is pairwise fitting of pseudo-likelihood functions for pairs of outcomes. The second approach recovers correlations between parameter estimates across multiple marginal linear mixed models. The methods are evaluated both in terms of a data example from a study on the effects of milk protein on health in young adolescents and in an extensive simulation study. We find that the two alternatives give similar results in settings where an exchangeability condition is met, but otherwise pairwise fitting shows a larger loss in efficiency than the marginal models approach. Using an alternative to the joint modelling strategy will lead to some but not necessarily a large loss of efficiency for small sample sizes.
DOI: 10.6084/m9.figshare.5954662
title: JGR-Data

description: The files containing the flux rope system in the initial condition and in the catastrophic condition.
DOI: 10.6084/m9.figshare.5954662.v2
title: JGR-Data

description: The files containing the flux rope system in the initial condition and in the catastrophic condition.
DOI: 10.6084/m9.figshare.5954662.v1
title: JGR-Data

description: The files containing the flux rope system in the initial condition and in the catastrophic condition.
DOI: 10.6084/m9.figshare.5954653
title: Tiludronate and Clodronate do not Affect Bone Structure or Remodeling Kinetics over a 60 Day Randomized Trial - Dataset

description: Tiludronate (TIL) and clodronate (CLO) are FDA-approved bisphosphonate drug therapies for navicular disease in horses. Although clinical studies have determined their ability to reduce lameness in horses, data regarding the effect on bone structure and remodeling is lacking. Additionally, due to off-label use of these drugs in young performance horses, effects on bone in young horses need to be investigated. Therefore, the purpose of this randomized, experimental pilot study was to determine the effect of TIL and CLO on normal bone cells, structure and remodeling after 60 days in clinically normal, young horses. Additionally, the effect of CLO on bone healing 60 days after an induced defect was investigated. Data included are raw micro-computed tomography data, and static and dynamic histomorphometry data from all horses analyzed. Abbreviations, formulas, and units are standard for the field and are referenced within the published article.
DOI: 10.6084/m9.figshare.5954653.v1
title: Tiludronate and Clodronate do not Affect Bone Structure or Remodeling Kinetics over a 60 Day Randomized Trial - Dataset

description: Tiludronate (TIL) and clodronate (CLO) are FDA-approved bisphosphonate drug therapies for navicular disease in horses. Although clinical studies have determined their ability to reduce lameness in horses, data regarding the effect on bone structure and remodeling is lacking. Additionally, due to off-label use of these drugs in young performance horses, effects on bone in young horses need to be investigated. Therefore, the purpose of this randomized, experimental pilot study was to determine the effect of TIL and CLO on normal bone cells, structure and remodeling after 60 days in clinically normal, young horses. Additionally, the effect of CLO on bone healing 60 days after an induced defect was investigated. Data included are raw micro-computed tomography data, and static and dynamic histomorphometry data from all horses analyzed. Abbreviations, formulas, and units are standard for the field and are referenced within the published article.
DOI: 10.6084/m9.figshare.5954647
title: Chiral Semiconductor Nanoparticles for Site-Selective Photoinduced Cleavage of DNA Phosphodiester Bond

description: chiral cysteine (Cys)-modified cadmium telluride (CdTe) nanoparticles (NPs) are shown to specifically recognize double-stranded DNA exceeding 90 base pairs and to selectively cut upon photonic excitation at the restriction site GAT¢ATC (¢ indicates the cleavage site). Notably, our results demonstrate that cleavage activity originates from photoinduced reactive oxygen species. This site-specific cleavage is attributed to the affinity between the Cys-modified CdTe and the specific DNA conformation proved by quantum chemically calculated interaction energies. Remarkably, the photoactive chiral NPs developed here as sequence-specific endonucleases performed well in living cells and in <i>vivo</i>.
DOI: 10.6084/m9.figshare.5954605
title: Identifying high conservation value areas for threatened mammals

description: https://link.springer.com/article/10.1007/s10531-017-1483-9
DOI: 10.6084/m9.figshare.5954605.v2
title: Identifying high conservation value areas for threatened mammals

description: https://link.springer.com/article/10.1007/s10531-017-1483-9
DOI: 10.6084/m9.figshare.5954605.v1
title: Using abundance and habitat variables to identify high conservation value areas for threatened mammals

description: https://link.springer.com/article/10.1007/s10531-017-1483-9
DOI: 10.6084/m9.figshare.5954563.v1
title: Spatial distribution and associated flora of Alcantarea nahoumii, a vulnerable endemic species to rocky outcrops of the Serra da Jibóia, Bahia, Brazil

description: The objective of this study was to characterize the spatial distribution pattern at different altitude gradients as well as to investigate the flora associated with A. nahoumii, considered to be endemic and vulnerable. The study was carried out in Serra da Jibóia, Santa Teresinha, Bahia, Brazil. An inventory was conducted of young and adult A. nahoumii specimens along with taxonomic identification and quantification of the associated species. The cover percentage of A. nahoumii, rock slope, organic matter percentage and exposed rock percentage were calculated, as well as the following phytosociological parameters: absolute density, relative density, absolute frequency, relative frequency, and dominance of A. nahoumii. For the spatial distribution, three indices were tested (Morisita, McGuinnes and Payandech). Canonical correspondence analysis was also applied to test the association of the environmental variables with the species in the community. A total of 1,660 individuals were encountered and classified according to taxonomy in 18 families, 25 genera and 28 species. The spatial distribution pattern of the A. nahoumii population is aggregate. The results demonstrate that the population structure of A. nahoumii is stable, but events such as fires and extractive exploitation make the species vulnerable, along with the other species that inhabit the area.
DOI: 10.6084/m9.figshare.5954545
title: Datasets for Sibbald cores

description: Meadow core is represented by location BRiparian core is represented by location WInterior core is represented by location L<br>FilesAll_testate.csv - Testate Amoebae dataAll_MF.csv - Macrofossil dataAll_CC.csv - presence/absence dataAll_AB.csv - Abiotic proxy data
DOI: 10.6084/m9.figshare.5954515.v3
title: Dynamic Design and Simulation Analysis of Permanent Magnet Motor in Different Scenario of fed Alimentation

description: This paper deals with investigation on non purely sinusoidal input supply analysis of line-start PMM using finite element analysis (FEA), in the present times a greater awareness is generated by the problems of harmonic voltages and currents produced by non-linear loads like the power electronic converters. These combine with non-linear nature of PMM core and produce severe distortions in voltages and currents and increase the power loss, additional copper losses due to harmonic currents, increased core losses, electromagnetic interference with communication circuits, efficiency reduction, increased in motors temperature and torque oscillations. In addition to the operation of PMM on the sinusoidal supplies, the harmonic behavior becomes important as the size and rating of the PMM increases. Thus the study of harmonics is of great practical significance in the operation of PMM.
DOI: 10.6084/m9.figshare.5954515.v4
title: Dynamic Design and Simulation Analysis of Permanent Magnet Motor in Different Scenario of fed Alimentation

description: This paper deals with investigation on non purely sinusoidal input supply analysis of line-start PMM using finite element analysis (FEA), in the present times a greater awareness is generated by the problems of harmonic voltages and currents produced by non-linear loads like the power electronic converters. These combine with non-linear nature of PMM core and produce severe distortions in voltages and currents and increase the power loss, additional copper losses due to harmonic currents, increased core losses, electromagnetic interference with communication circuits, efficiency reduction, increased in motors temperature and torque oscillations. In addition to the operation of PMM on the sinusoidal supplies, the harmonic behavior becomes important as the size and rating of the PMM increases. Thus the study of harmonics is of great practical significance in the operation of PMM.
DOI: 10.6084/m9.figshare.5954449.v2
title: Appendix A.docx

description: Participant questionnaire on (A) confidence in language abilities (done pre and post-participation) and (B) familiarity/interest in iPad use (done only post-participation).<br><br>This figure supports a recent submission to Topics in Stroke Rehabilitation
DOI: 10.6084/m9.figshare.5954350
title: RUSSIAN ORTHODOX CHURCH IN THE STRUCTURE OF STATE ADMINISTRATION IN THE XIX - BEGINNING XX centuries

description: The article outlines the key areas of the charitable and educational activities of the Orthodox Church, which are analyzed during religious reforms in the 19th and early 20th centuries. in Russia. It is shown that at that time the scale of charity aid and the responsibilities of charitable organizations increased; the control over the distribution of aid has improved, the role of the Church in the social protection of the population has increased. The conclusions made in the article allow us to look at a holistic picture of the Church's activities in providing the educational process in Russian church schools during the period under study. It turned out that the concrete activity of the clergy, which was impossible without the proper level of education, placed the clergy in the most literate category of the population. It is the priests, in the absence of a developed education system in Russia, began to introduce primary public education. This article helps to understand and systematize the position of the Church as a spiritual and moral institution that preserves Russia's cultural heritage. Of particular importance is the regional nature of the topic under study, which makes it possible to understand the general and specific relations between the Church and the state. For the international community, the article will be useful as an archival exhibition, which is a rare publication that reveals the relationship between the Orthodox Church and the state in Russia in the 19th and early 20th centuries.
DOI: 10.6084/m9.figshare.5954350.v1
title: RUSSIAN ORTHODOX CHURCH IN THE STRUCTURE OF STATE ADMINISTRATION IN THE XIX - BEGINNING XX centuries

description: The article outlines the key areas of the charitable and educational activities of the Orthodox Church, which are analyzed during religious reforms in the 19th and early 20th centuries. in Russia. It is shown that at that time the scale of charity aid and the responsibilities of charitable organizations increased; the control over the distribution of aid has improved, the role of the Church in the social protection of the population has increased. The conclusions made in the article allow us to look at a holistic picture of the Church's activities in providing the educational process in Russian church schools during the period under study. It turned out that the concrete activity of the clergy, which was impossible without the proper level of education, placed the clergy in the most literate category of the population. It is the priests, in the absence of a developed education system in Russia, began to introduce primary public education. This article helps to understand and systematize the position of the Church as a spiritual and moral institution that preserves Russia's cultural heritage. Of particular importance is the regional nature of the topic under study, which makes it possible to understand the general and specific relations between the Church and the state. For the international community, the article will be useful as an archival exhibition, which is a rare publication that reveals the relationship between the Orthodox Church and the state in Russia in the 19th and early 20th centuries.
DOI: 10.6084/m9.figshare.5954329
title: Circulation Diagram of the west Antarctic Peninsula (wAP) continental shelf

description: Figures from Moffat C, Meredith M. 2018 Shelf–ocean exchange and hydrography west of the Antarctic Peninsula: a review. Phil. Trans. R. Soc. A 376: 20170164. http://dx.doi.org/10.1098/rsta.2017.0164<br>Feel free to use and modify as you wish. If you need to cite it, use the manuscript above.
DOI: 10.6084/m9.figshare.5954206
title: Bremsstrahlung calculation without normalisation

description: Bremsstrahlung calculation without normalisation
DOI: 10.6084/m9.figshare.5954206.v1
title: Bremsstrahlung calculation without normalisation

description: Bremsstrahlung calculation without normalisation
DOI: 10.6084/m9.figshare.5954188
title: gamma = 5/3, eta=5/2

description: gamma = 5/3, eta=5/2
DOI: 10.6084/m9.figshare.5954188.v2
title: gamma = 5/3, eta=5/2

description: gamma = 5/3, eta=5/2
DOI: 10.6084/m9.figshare.5954188.v1
title: gamma = 5/3, eta=5/2

description: gamma = 5/3, eta=5/2
DOI: 10.6084/m9.figshare.5952364
title: Electronic patient agenda forms: comparing agreement between the reason for specialty consultation reported by referring providers and patients

description: <i>Objective</i>: Little is known about the agreement between referring providers’ reason for specialty evaluation and patients’ understanding of why they are referred for consultation. Here, we compared the reason for consult (RFC) documented by referring providers during usual care vs. the perceived RFC independently reported by patients through an e-portal just prior to the specialist visit. <i>Methods</i>: We performed an observational study among patients referred for gastrointestinal (GI) evaluation. Patients referred to the specialty clinic submitted their self-reported RFC using an online patient agenda form prior to their visit. Therefore, each participant had a referring provider- and patient-documented RFC. Blinded physicians reviewed the RFCs in random order using <i>a priori</i> coding criteria. We then compared whether the provider and patient RFC pairs were concordant (i.e., ≥1 clinical topic[s] in the RFCs matched). <i>Results</i>: Sixty patients completed the e-portal prior to their visit, leading to 60 provider-patient RFC pairs. The RFC pairs were concordant in only 52% of cases. <i>Conclusions</i>: There is poor agreement between referring providers’ reason for GI referral and patients’ understanding of why they are visiting the clinic. Future research examining whether electronic patient agenda forms impact diagnostic and management precision, patient satisfaction, and healthcare utilization is warranted.
DOI: 10.6084/m9.figshare.5952364.v1
title: Electronic patient agenda forms: comparing agreement between the reason for specialty consultation reported by referring providers and patients

description: <i>Objective</i>: Little is known about the agreement between referring providers’ reason for specialty evaluation and patients’ understanding of why they are referred for consultation. Here, we compared the reason for consult (RFC) documented by referring providers during usual care vs. the perceived RFC independently reported by patients through an e-portal just prior to the specialist visit. <i>Methods</i>: We performed an observational study among patients referred for gastrointestinal (GI) evaluation. Patients referred to the specialty clinic submitted their self-reported RFC using an online patient agenda form prior to their visit. Therefore, each participant had a referring provider- and patient-documented RFC. Blinded physicians reviewed the RFCs in random order using <i>a priori</i> coding criteria. We then compared whether the provider and patient RFC pairs were concordant (i.e., ≥1 clinical topic[s] in the RFCs matched). <i>Results</i>: Sixty patients completed the e-portal prior to their visit, leading to 60 provider-patient RFC pairs. The RFC pairs were concordant in only 52% of cases. <i>Conclusions</i>: There is poor agreement between referring providers’ reason for GI referral and patients’ understanding of why they are visiting the clinic. Future research examining whether electronic patient agenda forms impact diagnostic and management precision, patient satisfaction, and healthcare utilization is warranted.
DOI: 10.6084/m9.figshare.5952328
title: Dataset Opposing effects of floral visitors and soil conditions on the determinants of competitive outcomes maintain species diversity in heterogeneous landscapes. Lanuza et al. 2018 Ecology Letters

description: This dataset includes the following four files: <br>Plantspecies_abundancesraw.csv ; Description: Abundances per subplot of the distinct species present in our study system (See Table 1 main text for species code).<br>Plantspecies_competitionraw.csv ; Description: Seed set and fruit set of the focal species per subplot as a function of the number and identity of neighbours within a radius of 7.5cm.<br>Salinity_humidityraw.csv ; Description: Fortnightly record of soil humidity and salinity per subplot obtained a 10cm probed attached to a portable Time Domain Reflectometer (TDR).<br>Floralvistors_samplingraw.csv ; Description: Weekly record of visits of floral visitors to the distinct focal species. This file includes information temperature, humidity, code of collected floral visitors, and subplot position of the focal plant within the plot for each sampling day.
DOI: 10.6084/m9.figshare.5952322
title: Experiment 1: AC voltage-current characteristics of the human skin memristor.

description: <b>Description</b><br>The AC voltage-current (V-I) characteristics of the human skin memristor were studied in experiment 1. The data was collected from three different skin sites (earlobe, fingertip, forehead) simultaneously. The recordings were done on 28 test subjects. <br><br><b>Experimental Design</b><br>Sinusoidal (with amplitudes of 0.4 V, 0.8 V, and 1.2 V), triangular (amplitude of 1.2 V) and non-periodic voltage signals were applied with six different frequencies (0.05 Hz, 0.1 Hz, 0.25 Hz, 0.5 Hz, 1Hz, 2.5 Hz) for three periods each. The resulting current, i, through the skin was recorded. The sign of each applied voltage signal was randomized. Furthermore, shape and amplitude appeared in a random sequence. For each of these five combinations, a frequency sweep over all six frequencies in a randomized order was applied. The waiting time before a signal with a new frequency was applied was 1 second. The waiting time before a run with a new signal shape or amplitude was 2 seconds. The number of samples per signal period was always 500.<br><br><b>File information</b><br>The recordings are presented in the same order as they were conducted.<br><br><i>"Data_experiment_1 (AC V_I_characteristics)"</i>: The Samples 1 to 1501 in each line reflect 3 periods of the corresponding signal. Sample 1 of each measurement run was distorted by the instrumentation and was set to NaN (not a number) which can be handled by Matlab.<br><br>"<i>Data_EDA (Small signal conductance G, susceptance and DC potential)_Before_and_after_Experiment_1</i>": This file contains EDA data that was measured before and after experiment 1. <br> <br>
DOI: 10.6084/m9.figshare.5952322.v1
title: Experiment 1: AC voltage-current characteristics of the human skin memristor.

description: <b>Description</b><br>The AC voltage-current (V-I) characteristics of the human skin memristor were studied in experiment 1. The data was collected from three different skin sites (earlobe, fingertip, forehead) simultaneously. The recordings were done on 28 test subjects. <br><br><b>Experimental Design</b><br>Sinusoidal (with amplitudes of 0.4 V, 0.8 V, and 1.2 V), triangular (amplitude of 1.2 V) and non-periodic voltage signals were applied with six different frequencies (0.05 Hz, 0.1 Hz, 0.25 Hz, 0.5 Hz, 1Hz, 2.5 Hz) for three periods each. The resulting current, i, through the skin was recorded. The sign of each applied voltage signal was randomized. Furthermore, shape and amplitude appeared in a random sequence. For each of these five combinations, a frequency sweep over all six frequencies in a randomized order was applied. The waiting time before a signal with a new frequency was applied was 1 second. The waiting time before a run with a new signal shape or amplitude was 2 seconds. The number of samples per signal period was always 500.<br><br><b>File information</b><br>The recordings are presented in the same order as they were conducted.<br><br><i>"Data_experiment_1 (AC V_I_characteristics)"</i>: The Samples 1 to 1501 in each line reflect 3 periods of the corresponding signal. Sample 1 of each measurement run was distorted by the instrumentation and was set to NaN (not a number) which can be handled by Matlab.<br><br>"<i>Data_EDA (Small signal conductance G, susceptance and DC potential)_Before_and_after_Experiment_1</i>": This file contains EDA data that was measured before and after experiment 1. <br> <br>