cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.tn6b9g
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia latisepala Pedley",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 113 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038959-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.txq2hf
title: Occurrence Download

description: A dataset containing 283 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Synthyris pinnatifida S.Watson"
 ]
}

 The dataset includes 283 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034521-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d1mllg
title: Occurrence Download

description: A dataset containing 75519 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Clupea harengus Linnaeus, 1758",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 75519 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013743-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.78vhf8
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptuca coloradensis (Rathbun, 1894)"
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017185-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bkdf82
title: Occurrence Download

description: A dataset containing 294488601 species occurrences available in GBIF matching the query:
(Query is too complex. Can be viewed on the landing page)

 The dataset includes 294488601 records from 11367 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034534-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.37rdyu
title: Occurrence Download

description: A dataset containing 4020 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Pterocarpus officinalis Jacq., Pterocarpus suberous (Aubl.) Pers., Moutouchi suberosa Aubl., Moutouchi draco (L.) Benth., Pterocarpus draco L., Pterocarpus belizensis Standl., Pterocarpus moutouchi Poir., Lingoum officinale (Jacq.) Kuntze)"
 ]
}

 The dataset includes 4020 records from 165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006912-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hpcasw
title: Occurrence Download

description: A dataset containing 6443 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Emberiza pallasi (Cabanis, 1851)"
 ]
}

 The dataset includes 6443 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006916-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10160636
title: Sentinel-1/2 derived Arctic Coastal Human Impact dataset (SACHI)

description: The SACHI (Sentinel-1/2 derived Arctic Coastal Human Impact) V1 dataset was developed as part of the HORIZON2020 project Nunataryuk by b.geos (www.bgeos.com). V1 covered a 100km buffer from the Arctic Coast (land area), for areas with permafrost near the coast. V2 has been prepared as part of the ESA project EO4PAC. It covers additional selected areas extending the coverage to the south.It is based on Sentinel-1 and Sentinel-2 data from 2016-2020 using the algorithms described in Bartsch et al. (2020). V1 is a supplement to Bartsch et al. (2023) and V2 to Tanguy et al. (2024).

V2 consists of two shape files.

1) SACHI_v2.shp - all identified objects with infrastructure/impact classes and auxiliary information2) SACHI_v2_granules_acquisition_dates - processed Sentinel-2 granule extent polygons with dates of all used input data

Dataset reference: see Zenodo 'Sentinel-1/2 derived Arctic Coastal Human Impact dataset (SACHI) v2' (zenodo.org)

Description of fields in SACHI_v2.shp:

class: SACHI class value. 11=linear transport infrastructure (asphalt), 12=linear transport infrastructure (gravel), 13=linear transport infrastructure (undefined),20=buildings (and other constructions such as bridges), 30=other impacted area (includes gravel pads, mining sites), 40=airstrip, 50=reservoir or other water body impacted by human activities

Description of fields in SACHI_v2_granules_acquisition_dates.shp:

S2_date1 to S2_date3 - dates of individual Sentinel-2 images used for averagingS1_winter - year(s) of Sentinel-1 images used for averaging (months December and/or January)
description: Further support was received by ESA EO4PAC for v2, by ESA CCI+ Permafrost, HGF AI-CORE, and NSF Permafrost DiscoveryGateway for v1. The processing scheme was developed on a highly performant virtual machine (VM) provided by the Copernicus Research and User Support (RUS). Results are based on modified Copernicus data from 2016 to 2020.
DOI: 10.5281/zenodo.4925910
title: Sentinel-1/2 derived Arctic Coastal Human Impact dataset (SACHI)

description: The SACHI (Sentinel-1/2 derived Arctic Coastal Human Impact) V1 dataset was developed as part of the HORIZON2020 project Nunataryuk by b.geos (www.bgeos.com). V1 covered a 100km buffer from the Arctic Coast (land area), for areas with permafrost near the coast. V2 has been prepared as part of the ESA project EO4PAC. It covers additional selected areas extending the coverage to the south.It is based on Sentinel-1 and Sentinel-2 data from 2016-2020 using the algorithms described in Bartsch et al. (2020). V1 is a supplement to Bartsch et al. (2023) and V2 to Tanguy et al. (2024).

V2 consists of two shape files.

1) SACHI_v2.shp - all identified objects with infrastructure/impact classes and auxiliary information2) SACHI_v2_granules_acquisition_dates - processed Sentinel-2 granule extent polygons with dates of all used input data

Dataset reference: see Zenodo 'Sentinel-1/2 derived Arctic Coastal Human Impact dataset (SACHI) v2' (zenodo.org)

Description of fields in SACHI_v2.shp:

class: SACHI class value. 11=linear transport infrastructure (asphalt), 12=linear transport infrastructure (gravel), 13=linear transport infrastructure (undefined),20=buildings (and other constructions such as bridges), 30=other impacted area (includes gravel pads, mining sites), 40=airstrip, 50=reservoir or other water body impacted by human activities

Description of fields in SACHI_v2_granules_acquisition_dates.shp:

S2_date1 to S2_date3 - dates of individual Sentinel-2 images used for averagingS1_winter - year(s) of Sentinel-1 images used for averaging (months December and/or January)
description: Further support was received by ESA EO4PAC for v2, by ESA CCI+ Permafrost, HGF AI-CORE, and NSF Permafrost DiscoveryGateway for v1. The processing scheme was developed on a highly performant virtual machine (VM) provided by the Copernicus Research and User Support (RUS). Results are based on modified Copernicus data from 2016 to 2020.
DOI: 10.5281/zenodo.4925911
title: Sentinel-1/2 derived Arctic Coastal Human Impact dataset (SACHI)

description: The SACHI (Sentinel-1/2 derived Arctic Coastal Human Impact) dataset has been primarily developed as part of the HORIZON2020 project Nunataryuk by b.geos (www.bgeos.com). It covers a 100km buffer from the Arctic Coast (land area), for areas with permafrost near the coast. It is based on Sentinel-1 and Sentinel-2 data from 2016-2020 using the algorithms described in Bartsch et al. (2020). It is a supplement to Bartsch et al. (2021 - https://iopscience.iop.org/article/10.1088/1748-9326/ac3176/meta).


It consists of three shape files:


1) SACHI.shp - all identified objects with infrastructure/impact classes and auxiliary information (permafrost status and trends, nightlight radiance, vegetation zone, Normalized Difference Vegetation Index trends from Landsat, settlements names)
2) SACHI_100km_buffer - Buffer polygon (analyses extent)
3) SACHI_granules_acquisition_dates - processed Sentinel-2 granule extent polygons with dates of all used input data


SACHI class values: 1=linear transport infrastructure, 2=buildings (and other constructions such as bridges), 3=other impacted area (includes gravel pads, mining sites)


See README.TXT for description of data fields.
description: Further support was received by  ESA  CCI+  Permafrost,  HGF  AI-CORE, and NSF Permafrost DiscoveryGateway. The processing scheme was developed on a highly performant virtual machine (VM) provided by the Copernicus Research and User Support (RUS). Results are based on modified Copernicus data from 2016 to 2020.
DOI: 10.5284/1120005
title: Site Data from an Archaeological Evaluation at Latchford House, Latchford Lane, Great Haseley, July 2022

description: This digital archive comprises images, cad, gis, spreadsheet and text data from an archaeological evaluation at Latchford House, Latchford Lane, Great Haseley, Oxfordshire. The work was undertaken on the 6th July 2022, by John Moore Heritage Services. The work involved the excavation of three 10 metre x 1.8 metre trenches, each of which uncovered archaeological ditches.
DOI: 10.5281/zenodo.6675478
title: SUNNy test data

description: Disclaimer: I am not the owner of this data. It is a reparsed extract from the Seurat object subset of mouse liver scRNAseq data (Guilliams et al., Cell 2022) as published by Browaeys Robin (https://zenodo.org/record/5840787#.YrHDETVBw18).


The purpose is to test the SUNNy algorithm currently being developed.
DOI: 10.5281/zenodo.6675479
title: SUNNy test data

description: Disclaimer: I am not the owner of this data. It is a reparsed extract from the Seurat object subset of mouse liver scRNAseq data (Guilliams et al., Cell 2022) as published by Browaeys Robin (https://zenodo.org/record/5840787#.YrHDETVBw18).


The purpose is to test the SUNNy algorithm currently being developed.
DOI: 10.15151/esrf-es-1699370075
title: Investigating the iron oxidation state in silicate melt using nano-focused synchrotron Mössbauer spectroscopy under deep magma ocean conditi

description: The redox conditions of the magma ocean on early Earth had a far-reaching impact on the composition and evolution of the silicate mantle and atmosphere. In this study, we propose to investigate the iron oxidation state of silicate melts under metallic-iron saturated conditions, for the first time, reaching pressures and temperatures up to 135 GPa and 5500 K, respectively. The samples will be synthesized in a laser-heated diamond anvil cell, simulating conditions corresponding to a deep magma ocean. Recovered samples, which exhibit micron-scale reacted areas, are then subjected to focused ion beam processing. The exposed quenched silicate melts will be analysed using nano-focused synchrotron Mössbauer spectroscopy, allowing us to determine their Fe3+/ΣFe ratios. Our results will offer new constraints regarding the composition and evolution of early Earth.
DOI: 10.15468/dl.e77kfw
title: Occurrence Download

description: A dataset containing 51119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2019",
 "Year is less than 2020",
 "TaxonKey is one of (Thalassiosira P.T.Cleve, 1873, Haptophyta, Bacillariophyceae)"
 ]
}

 The dataset includes 51119 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006918-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z3tj3p
title: Occurrence Download

description: A dataset containing 477 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Inga tenuistipula Ducke)"
 ]
}

 The dataset includes 477 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006920-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4vknnu
title: Occurrence Download

description: A dataset containing 30813 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2020",
 "Year is less than 2021",
 "TaxonKey is one of (Thalassiosira P.T.Cleve, 1873, Haptophyta, Bacillariophyceae)"
 ]
}

 The dataset includes 30813 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006919-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x9x9e8
title: Occurrence Download

description: A dataset containing 62687 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2018",
 "Year is less than 2019",
 "TaxonKey is one of (Thalassiosira P.T.Cleve, 1873, Haptophyta, Bacillariophyceae)"
 ]
}

 The dataset includes 62687 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006917-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wsw9bz
title: Occurrence Download

description: A dataset containing 200853 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation"
 ]
 },
 "Country is United States of America",
 "Geometry POLYGON((-126.87012 54.44449,-138.55957 71.39916,-166.59668 72.59398,-170.46387 64.6427,-189.18457 55.60318,-191.46973 49.69606,-140.40527 50.9861,-126.87012 54.44449))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 200853 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0122574-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pczx2z
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psychotria mima Standl."
 ]
}

 The dataset includes 71 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006922-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26128666
title: Excel data

description: <i>Clostridium perfringens</i> type A causes gas gangrene, which involves muscle infection. Both alpha toxin (PLC), encoded by the <i>plc</i> gene, and perfringolysin O (PFO), encoded by the <i>pfoA</i> gene, are important when type A strains cause gas gangrene in a mouse model. This study used the differentiated C2C12 muscle cell line to test the hypothesis that one or both of those toxins contribute to gas gangrene pathogenesis by releasing growth nutrients from muscle cells. RT-qPCR analyses showed that the presence of differentiated C2C12 cells induces <i>C. perfringens</i> type A strain ATCC3624 to upregulate <i>plc</i> and <i>pfoA</i> expression, as well as increase expression of several regulatory genes, including <i>virS/R</i>, <i>agrB/D, </i>and <i>eutV/W</i>. The VirS/R two component regulatory system (TCRS) and its coupled Agr-like quorum sensing system, along with the EutV/W TCRS (which regulates expression of genes involved in ethanolamine [EA] utilization), were shown to mediate the C2C12 cell-induced increase in <i>plc</i> and <i>pfoA</i> expression. EA was demonstrated to increase toxin gene expression. ATCC3624 growth increased in the presence of differentiated C2C12 muscle cells and this effect was shown to involve both PFO and PLC. Those membrane-active toxins were each cytotoxic for differentiated C2C12 cells, suggesting they support ATCC3624 growth by releasing nutrients from differentiated C2C12 cells. These findings support a model where, during gas gangrene, increased production of PFO and PLC in the presence of muscle cells causes more damage to those host cells, which release nutrients like EA that are then used to support <i>C. perfringens</i> growth in muscle.
DOI: 10.6084/m9.figshare.26128666.v1
title: Excel data

description: <i>Clostridium perfringens</i> type A causes gas gangrene, which involves muscle infection. Both alpha toxin (PLC), encoded by the <i>plc</i> gene, and perfringolysin O (PFO), encoded by the <i>pfoA</i> gene, are important when type A strains cause gas gangrene in a mouse model. This study used the differentiated C2C12 muscle cell line to test the hypothesis that one or both of those toxins contribute to gas gangrene pathogenesis by releasing growth nutrients from muscle cells. RT-qPCR analyses showed that the presence of differentiated C2C12 cells induces <i>C. perfringens</i> type A strain ATCC3624 to upregulate <i>plc</i> and <i>pfoA</i> expression, as well as increase expression of several regulatory genes, including <i>virS/R</i>, <i>agrB/D, </i>and <i>eutV/W</i>. The VirS/R two component regulatory system (TCRS) and its coupled Agr-like quorum sensing system, along with the EutV/W TCRS (which regulates expression of genes involved in ethanolamine [EA] utilization), were shown to mediate the C2C12 cell-induced increase in <i>plc</i> and <i>pfoA</i> expression. EA was demonstrated to increase toxin gene expression. ATCC3624 growth increased in the presence of differentiated C2C12 muscle cells and this effect was shown to involve both PFO and PLC. Those membrane-active toxins were each cytotoxic for differentiated C2C12 cells, suggesting they support ATCC3624 growth by releasing nutrients from differentiated C2C12 cells. These findings support a model where, during gas gangrene, increased production of PFO and PLC in the presence of muscle cells causes more damage to those host cells, which release nutrients like EA that are then used to support <i>C. perfringens</i> growth in muscle.
DOI: 10.15468/dl.357a8f
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasGeospatialIssue is false",
 "Country is New Zealand",
 "Modified is 2024-05"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006923-240626123714530/datasets/export for details.
DOI: 10.15468/dl.p59n2m
title: Occurrence Download

description: A dataset containing 225 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Inga huberi Ducke)"
 ]
}

 The dataset includes 225 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006924-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqeaar
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psychotria xiriricana Standl. ex Hoehne"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006925-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mnw8vu
title: Occurrence Download

description: A dataset containing 245 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Inga panurensis Spruce ex Benth.)"
 ]
}

 The dataset includes 245 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006926-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.quvr9k
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Serjania dura Radlk."
 ]
}

 The dataset includes 29 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006927-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ea744c
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella nanuzae Valdespino"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006928-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xx2efj
title: Occurrence Download

description: A dataset containing 2593837 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is 2023 Contributions of Plant Specimen Data inside China"
 ]
}

 The dataset includes 2593837 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006921-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9duhkm
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Inga microcoma Harms)"
 ]
}

 The dataset includes 107 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006930-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.