cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/zmzzv9k2tv
title: Data for: BetaDL: a Protein Beta-sheet Predictor Utilizing a Deep Learning Model and Independent Set Solution

description: ======================================= BetaDL: a Protein Beta-sheet Predictor Utilizing a Deep Learning Model and Independent Set Solution Prediction of beta-sheet structures (beta-residue contacts, beta-strand pairs, beta-strand pairing directions) ======================================= Knowledge Engineering Research Group (KERG), Department of Computer Engineering, Faculty of Engineering, Ferdowsi University of Mashhad, Iran. Home page: https://kerg.um.ac.ir/ Contact: Dehgani.toktam@mail.um.ac.ir; naghibzadeh@um.ac.ir ======================================= Input: In order to run BetaDL the following information must be provided: 1. Protein sequence and secondary structure assignment 2. A residue contact Probabilities matrix 3. Probability model for beta-sheet size respect to the number of beta-strands in proteins Output: BetaDL will predict the following information about beta sheet structure: 1. Beta-residue contact maps 2. Beta-strand pairs 3. Beta-strand pairing directions ======================================= Installation (Windows Version) and usage: 1. Unzip "BetaDL_package.rar" into the "BetaDL_package" folder 2. Compile and build the source codes in "BetaDL" folder and move "BetaDL.exe" to the BetaDL_package 3. Provide input files: Residue contact Probabilities in the "residue contact probabilities" folder, e.g. "\residue contact probabilities\1e5ka.GCNN" Sequence and secondary structure in the "secondary structures" folder, e.g. "\secondary structures\1e5ka.out" 4. Run "BetaDL.exe" 5. Output file: Beta-residue contact probabilities, e.g. "\test\1e5ka_DeepBBContact.out" Beta-residue pairwise alignments, e.g. "\test\1e5ka_alignmnet.out" Beta-residue contact maps, "e.g. \test\1e5ka_contactmap.out" Beta-sheet structure, e.g. "\test\1e5ka_conformation.out" ****The correct answer for the sample protein (1e5ka) can be found in following address: "\correct_beta_sheet_structure\1e5ka_correct.out" Enjoy it! ======================================= For more information please contact: Dehgani.toktam@mail.um.ac.ir; naghibzadeh@um.ac.ir
DOI: 10.6084/m9.figshare.26181827.v3
title: QUESTIONNAIRE ON SUPPLY CHAIN MANAGEMENT

description: The attached files were the following: <br>1. Statistical Results processed by the university statistician;The questionnaire used in gathering data that underwent reliability through Cronbach Alpha<br>3. Tallied Scores from the respondents of the study.
DOI: 10.17632/bxz8vgb84t
title: Supplemental material: The bla TEM ESBL E. coli gene's current state in Bangladesh's poultry industry

description: This supplemental material provides information on genotypic antimicrobial resistance profiles of E. coli sourced from poultry in Bangladesh (articles published from 2014 to 2024).E. coli in chicken that produces extended-spectrum beta-lactamases (ESBLs) has emerged as a significant health concern in Bangladesh. It's important to handle and boil chicken meat properly.
DOI: 10.17632/f6m3f9h5sj
title: experimental Dataset on Armature Control of a DC Motor.

description: Dataset on Armature Control of a DC Motor.
DOI: 10.17632/fh8h4859nh
title: Real and synthetic 3D models of F50 sand grains

description: The dataset comprises 1,551 real sand grains obtained from synchrotron microcomputed tomography (SMT) scans and 50,000 synthetically generated sand grain 3D models created using a latent space denoising diffusion algorithm. The 3D surface models are provided as Wavefront OBJ files (.obj), and the original and generated point clouds, representing the 3D coordinates of the sand grain surfaces, can be extracted from the vertices of these surface meshes. 

The latent space denoising diffusion algorithm generates realistic synthetic sand grain point clouds that emulate the morphological features of real grains. The data shows that synthetic grains exhibit similar shape, size, and surface characteristics to the real grains, making it useful for studying granular assemblies' behavior in engineering applications. This dataset enables detailed analysis and comparison of real and synthetic sand grains, aiming to facilitate the development and validation of new models for granular material analysis. 

This dataset is part of the paper titled "Synthesizing Realistic Sand Assemblies with Denoising Diffusion in Latent Space" (2024) by Nikolaos N. Vlassis, WaiChing Sun, Khalid A. Alshibli, and Richard A. Regueiro.
DOI: 10.17632/jmm8smf4sc
title: Fire Sale Risk and Expected Stock Returns (Aragon and Kim)

description: The data include realizations of the flow factor, returns of the high-minus-low fire sale exposure (FSE) portfolio, and stocks' FSE characteristics.
DOI: 10.6084/m9.figshare.14816622.v3
title: Metabolomic and Lipidomic Analysis of human CSF

description: The data consist of lipidomic and metabolomic assays from the cerrebrospinal fluid of one hundred ninety-eight CSF samples, collected from 85 controls, 57 Alzheimer's (AD) patients, and 56 Parksinson's (PD) patients (note the PD data is currently not available, but will be pending approval). For each subject we also record age and sex. subject_info contains the age, type (AD, PD or control), and sex of the subjects. lipids.csv contains normalized lipid abundances for each subject, targeted.csv contains abundances of 108 known metabolites and untargeted.csv contains abundances of thousands of features, identified only by their mass-to-charge ratio (m/z).
DOI: 10.6084/m9.figshare.26798683.v1
title: <b>Coordinated cellular behavior regulated by epinephrine neurotransmitters in the nerveless placozoa</b>

description: scRNA-seq数据的重新分析
DOI: 10.6084/m9.figshare.27854304.v2
title: <b>A fase de negociações das condições no acordo de não persecução penal:</b> atuação negocial do Ministério Público na Comarca de Goiânia

description: Pesquisa empírica que, por meio da observação não participante em audiências de negociação, analisou a atuação do Ministério Público na Comarca de Goiânia/GO, com foco na fase de negociação do acordo de não persecução penal . Pontua-se que os resultados da pesquisa são expostos e discutidos na monografia <b>'</b><b>A fase de negociações das condições no acordo de não persecução penal:</b> atuação negocial do Ministério Público na Comarca de Goiânia<b>'</b>, elaborada por Camylla Moreira da Paz.
DOI: 10.17632/d2cvgfs65p
title: Italy Regions 2007 2020

description: Data on Italian regions from 2007 to 2020 (macroeconomic data of regions, debt (financial) data, accounting data (expenditures and revenues), characteristics of regions' presidents)
DOI: 10.17632/v7v88z6wp7
title: Recognition of human mood, alertness and comfort under the influence of indoor lighting using physiological features

description: Illuminance and correlated colour temperature (CCT) have been reported to be closely related to human mood, alertness, and comfort. In this dataset, we conducted light experiments at six illuminance levels of functional lighting (300, 400, 500, 600, 700, and 800lx) and four typical CCT levels (3000, 4000, 5000, and 6000K) to analyse the light effects on users’ mood, alertness, and visual comfort. Subjective feelings under the influence of the light environment can be evaluated through columns of physiological features extracted from electrocardiogram (ECG), electrodermal activity (EDA), skin temperature (SKT) and blood oxygen saturation (SpO2) data.
DOI: 10.17632/jmzbzhgtt7
title: Economic evaluation in decision models: challenges and a methodological guide

description: Decision models presented in Supply Chain (SC) and Operations Management articles are often based on an economic criterion to find the best possible solution. Thus, the solution's relevance depends on the significance of the cost information used. This paper aims to provide a set of methodological precautions for economic evaluation in decision models. It reviews 12 selected illustrative decision models to understand their economic functions. The paper emphasizes that when cost information is not appropriate for the decisions under consideration, the solution provided by the model may be irrelevant. According to the decision level of the model, its perimeter and degree of certainty, the paper highlights three methodological challenges related to the causality of costs, their traceability, and the consideration of opportunity costs. We conclude with methodological guide for improving the relevance of economic evaluation in decision models.
DOI: 10.6084/m9.figshare.24050058.v2
title: TFPsocialmedia dataset

description: <i>The TFPsocialmedia dataset offers a comprehensive social media data for understanding Turkish Foreign Policy. Curated tweets capture nuances of political discourse, while the social network structure enables insightful research on public perceptions and foreign policy events. Researchers can employ the dataset to unravel online portrayals of Turkey and explore the utilization of Twitter data in foreign policy analysis. This resource is particularly valuable for scholars seeking a deep dive into the digital dimensions of international relations.</i>
DOI: 10.6084/m9.figshare.17280074.v1
title: Gossypium anomalum (B1) genome

description: The reference-grade cotton genome assembly and annotation of Gossypium anomalum (B1) using Oxford Nanopore sequencing technology.
DOI: 10.17632/y87f2dxnmw
title: Data for: Compressed MRI reconstruction exploiting a rotation-invariant total variation discretization

description: This MATLAB package will reproduce the results of the proposed method in the paper "Compressed MRI reconstruction exploiting a rotation-invariant total variation discretization".
DOI: 10.6084/m9.figshare.23036876.v1
title: The computed data of dam break flows with a two-phase SPH model

description: The computed data obtained by a two-phase SPH model includes the flood propagation and topography in both two- and three- dimensional dam break flood cases, the structure of the bed load layer, as well as the mechanical energy evolution in dam break flow.
DOI: 10.17632/gzm5pxntyv
title: Nitrogen Deficiency of Rice Crop

description: The image data set consists of four category of Nitrogen deficient Rice crop Leaf images match with Leaf Color Chart.
DOI: 10.17632/wmx9jj2htd
title: A Comprehensive Dataset for Automated Cyberbullying Detection

description: Cyberbullying is characterized by aggressive, repetitive, and intentional communication among peers. However, most existing datasets for cyberbullying detection only focus on aggressive texts classified as aggressive or non-aggressive, disregarding the other three aspects of cyberbullying. This dataset is a comprehensive dataset that incorporates the four aspects of Cyberbullying. This dataset is an updated version of the dataset presented in our paper[1] and has been developed using the same methodology. In this updated version, we present complete and enhanced data and the code to generate data. The aggressive and non-aggressive messages compiled from different sources [2,3] have also been shared. If you use this dataset, please cite our paper [1]

[1] Ejaz, Naveed, Fakhra Razi, and Salimur Choudhury. "Towards comprehensive cyberbullying detection: A dataset incorporating aggressive texts, repetition, peerness, and intent to harm." Computers in Human Behavior (2023): 108123.

Text Messages sourced from:
 [2] Elsafoury, "Cyberbullying datasets," Mendeley. com, 2020. [Online]. Available: https://data. mendeley. com/datasets/jf4pzyvnpj/1. 
[3] R. Kumar, A. N. Reganti, A. Bhatia, and T. Maheshwari, "Aggression-annotated Corpus of Hindi-English Code-mixed Data," in Proceedings of the Eleventh International Conference on Language Resources and Evaluation (LREC 2018), Miyazaki, Japan, May 7-12, 2018.
DOI: 10.17632/hdvd6hfvb8
title: "College Students’ Remote Online Class Satisfaction" (CoSROCS)

description: The questionnaire consisted of 17 questions, which explored the most authentic feelings of students' satisfaction with long-distance teaching from four dimensions (learning satisfaction, learning effectiveness evaluation, interaction evaluation, and mental health impact). The data collection of this study was conducted using purposeful sampling surveys. Our main sample selection is sophomore students of vocational colleges in a private college in Shaanxi Province, China, during the closure of the COVID-19. Fifty three (n=53) voluntary students participated in this research and all of them were Chinese students aged between 18 and 23. The database provides valuable information about students' perceptions of online learning, it can be used to find correlations between demographic variables and remote online class effect.
DOI: 10.17632/mjhr46dkj6
title: Development of Anomaly Detectors for HVAC Systems using Machine Learning

description: The dataset refers to the operating parameters of an HVAC system that controls the environmental comfort of a non-residential building located in Turin (Italy).
The dataset contains 11 variables:
1. timestamp;
2. temperatures of return, supply and outdoor air [°C];
3. relative humidities of return, supply and outdoor air [%];
4. the temperature setpoint of the return air [°C];
5. the saturation temperature in the humidifier [°C];
6.  power required by the fans [kW];
7. energy required by the fans [kWh].
The data refer to the winters 2019-2020 and 2020-2021. The data is acquired every 15 minutes.
DOI: 10.6084/m9.figshare.26829061.v4
title: DataSet for Femtosecond laser-induced recrystallized nanotexturing for identity document security with physical unclonable functions

description: Data S1: 1100 (1000 true, 200 fake) images of nanotexture blocks with ACE.Data S2: Python code for morphological analysis of nanotexture blocks.Data S3: Augmented image samples for neural network authentication.Data S4: Python code for neural network authentication.
DOI: 10.17632/fsfzv5fwxz
title: Spatial distribution of soil δ13C in the central Brazilian savanna

description: Stable carbon isotope ratios (δ13C) of soil record information regarding C3 and C4 plants at the landscape scale that can be used to document vegetation distribution patterns. The Central Brazilian savanna (locally called the Cerrado) has a substantial potential to develop studies of patterns of dynamics and distribution of soil δ13C, due to its environmental diversity. The purpose of this work was to develop a spatial model of soil δ13C (soil δ13C isoscape) to the Cerrado, based on multiple linear regression analysis, and compare the results with the existing model to obtain greater detail of the soil δ13C distribution. The model used 219 soil samples (0–20 cm depth) and a set of climatic, pedological, topographic, and vegetation correlations. The soil δ13C isoscape model presentedamplitude between - 29‰ and -13‰, with the highest estimated values in the southern and the lowest values inthe northern of the Cerrado. Results indicate that soil δ13C, by reflecting the relative contribution of C3 and C4 species to plant community productivity, served as a proxy indicator of the vegetation history at the landscape scale for the Central Brazilian savanna. Despite the large sampling effort, there are still regions with some gaps that the model could not estimate. However, the soil δ13C isoscape model filled most the existing gaps and provided greater detail of some unique local aspects of the Cerrado.
DOI: 10.17632/k2m375429f
title: Barium isotope variation during granitic magma differentiation: implications for the discrimination of crystal fractionation and fluid-magma interaction

description: The Supplementary Material includes: 

Table S1 The main mineral proportions (vol. %) for representative samples;
Table S2 Whole-rock major and trace element compositions for syn-exhumation granites;
Table S3 Partition coefficient of trace elements, the Ba isotope composition of minerals and the composition of starting material in the modeling;
Table S4 Dehydration melting process modeling by GeoPS;
Table S5 Fractional crystallization modeling by Rhyolite-MELTS;

Fig. S1 Correlations among major oxide contents for the syn-exhumation granites;
Fig. S2 Correlations among major oxide contents for melt formed through dehydration melting;
Fig. S3 The effect of partial melting on Ba isotope compositions of melt;
Fig. S4 Chondrite-normalized REE patterns for syn-exhumation granites;
Fig. S5 The modal contents of crystallizing mineral assemblage during fractional crystallization.
DOI: 10.6084/m9.figshare.14820318.v1
title: CRC_CD45_rda

description: The expression matrix and metadata for single-cell RNA sequencing data of colorectal cancer patients and mouse treated with anti-CSF1R and anti-CD40. The data was generated in paper <b>Single-Cell Analyses Inform Mechanisms of Myeloid-Targeted Therapies in Colon Cancer</b>.
DOI: 10.17632/2js7x48ryy
title: A database of rigorous and high-precision periodic orbits of the Lorenz model

description: Abstract A benchmark database of very high-precision numerical and validated initial conditions of periodic orbits for the Lorenz model is presented. This database is a "computational challenge" and it provides the initial conditions of all periodic orbits of the Lorenz model up to multiplicity 10 and guarantees their existence via computer-assisted proofs methods. The orbits are computed using high-precision arithmetic and mixing several techniques resulting in 1000 digits of precision on the initial... Title of program: Lorenz-Database Catalogue Id: AEWM_v1_0 Nature of problem Database of all periodic orbits of the Lorenz model up to multiplicity 10 with 1000 precision digits. Versions of this program held in the CPC repository in Mendeley Data AEWM_v1_0; Lorenz-Database; 10.1016/j.cpc.2015.04.007 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/5xxgzv7fsp
title: BabyIDE1 Squeak image

description: This ZIP contains all files needed to open the BabyIDE-1 Squeak image on a PC with Windows 7. The image has neither been updated for later versions of Squeak nor tested for other OSs. For further details, see the README in the ZIP.
DOI: 10.17632/9gkh733vkr
title: Online Appendices for "Circulise4LCE: A Model-Driven Sustainability Development Framework for Local Circular Economy Engineering and Simulation"

description: Appendices A–D provide the supplementary materials for the Circulise4LCE framework. They include (A) a conceptual overview of the simulation logic and its underlying assumptions, (B) detailed parameter values and community dynamics modeled in the Fanyatu case, (C) the full source code of the SustainableCommunitySimulationGUI.java that drives the simulation environment, and (D) representative simulation output visualizations. These materials support the reproducibility, pedagogical integration, and practical application of the model-driven local circular economy framework proposed in the paper.
DOI: 10.6084/m9.figshare.7857779.v1
title: Flow data for selected stations in the SW Amazon ("MAP" region)

description: The data in this project are associated with the so-called MAP region in the SW Amazon: the states of Madre de Dios (Peru), Acre (Brazil) and Pando (Bolivia). The methods and results are discussed in a manuscript that has been accepted for publication by Nature Scientific Data (05/11/2019).<br>Flow data for 8 hydrological stations were downloaded from the Agencia Nacional de Aguas (ANA), through its Hidroweb (http://www.snirh.gov.br/hidroweb/ or http://hidroweb.ana.gov.br/). The original data was downloaded as a .txt file.The R script "FLOW_reorder_gapfill_plot.R" extracts the relevant information and orders the data chronologically.From manual inspections and checking we concluded that the linear relationship between the stations Rio Branco and Xapuri was best (and with enough data available) to gapfill for each other - which is also done in this script.Finally, the relationship and the gapfilled data is plotted (output is 2 plots combined in one figure).The .csv files are the final data sets.<br>Code last manipulated and tested in R version 3.4.3 ("Kite-Eating Tree").
DOI: 10.17632/9tyjnthbgg
title: Earthquake waveforms recorded by a dense seismic array in South China in June and August, 2021

description: Seismograms of events with magnitudes larger than 5.2 from 23 June, 2021 to 27 August, 2021. The data contain station-wise recordings in sac format. All the info needed is stored in the sac head files.
DOI: 10.17632/crcjw5hnkj
title: Summary of Studies

description: Table 1, Summary of studies evaluating the effects of endurance training on cardiovascular and metabolic function.
DOI: 10.17632/nywrhw3d8y
title: Cutaneous findings in hospitalized and critically-ill patients with COVID-19: A case series of 15 patients

description: Demographic information, clinical course, and timeline of cutaneous symptoms in hospitalized COVID-19 positive patients at Columbia University Irving Medical Center (CUIMC) by the adult dermatology consult service between 3/25/2020 and 5/1/2020.
DOI: 10.17632/rg843pggxp
title: Data for: A novel approach for the prevention of ionizing radiation-induced bone loss using a designer multifunctional cerium oxide nanozyme

description: This repository provides additional computational data to accompany the paper: A Novel approach for the prevention of ionizing radiation-induced bone loss using a designer multifunctional cerium oxide nanozyme, Fei Wei, Craig J. Neal, Tamil Selvan Sakthivel, Yifei Fu, Mahmoud Omer, Amitava Adhikary, Samuel Ward, Khoa Minh Ta, Samuel Moxon, Marco Molinari, Jackson Asiatico, Michael Kinzel, Sergey N. Yarmolenko, Vee San Cheong, Nina Orlovskaya, Ranajay Ghosh, Sudipta Seal, Melanie Coathup, Bioactive Materials, 2023, 21, 547-565, https://doi.org/10.1016/j.bioactmat.2022.09.011
DOI: 10.17632/y63zw6vj75
title: A practical and affordable surgical light-integrated camera system for dermatologic surgery video recordings

description: This supplementary material contains a short representative video footage recorded using the described setup in a very stable manner, providing a close perspective to the surgeon's point of view.
DOI: 10.26188/6287433ec0145
title: Role of slow EPSPs in regulating firing triggered by fast EPSPs in enteric neurons - Ca imaging and intrracellular recording raw data

description: Ca imaging data are grouped in zip files identified by preparation numbers, each file is the raw microscopy data and the file name identifies what was done. The intracellular recording data are in 3 excel files each named for the type of membrane potential change recorded. They are each data transferred without modification from .adicht files which require specialized software to be read. Data are presented in two columns: Column A is time in seconds, Column B is membrane potential in mV.