cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/6t8-vts-e61
title: Nymphalis antiopa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/c4w-zw2-sk6
title: Eudonia murana Curtis, 1827

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/paz-8lv-ny0
title: Agriades Hübner, 1819

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/azd-adg-g2g
title: Arctia plantaginis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/hpd-37t-3fx
title: Arctia plantaginis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/s1a-a58-p5v
title: Arctia plantaginis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15468/dl.x7pvw6
title: Occurrence Download

description: A dataset containing 1701 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tracheophyta)",
 "Geometry POLYGON ((12.97113 47.5265, 13.02113 47.5265, 13.02113 47.5765, 12.97113 47.5765, 12.97113 47.5265))"
 ]
}

 The dataset includes 1701 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031465-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/j38-s9p-122
title: Coranarta cordigera Thunberg, 1788

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/ptc-qfl-dvs
title: Caradrina (Caradrina) morpheus (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/s64-8kt-cnd
title: Agonopterix heracliana Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/ehn-a8h-ch5
title: Ochlodes Scudder, 1872

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/r3y-l0z-pvj
title: Issoria lathonia (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/4vq-wcz-81e
title: Nymphalis antiopa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/nay-rgm-jh0
title: Crambus perlellus Scopoli, 1763

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/5wq-gs3-m2c
title: Udea lutealis Hübner, 1809

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/dfp-f8t-8yk
title: Indalia lutarella (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/284-28z-lrv
title: Agriades Hübner, 1819

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/b58-jmq-zh9
title: Nymphalis antiopa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/3ml-byh-tjk
title: Udea lutealis Hübner, 1809

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/41n-ek0-msa
title: Indalia lutarella (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/h0e-g5j-8h8
title: Pleurota bicostella (Clerck, 1761)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/08e-wfs-qje
title: Nymphalis antiopa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/flg-lbf-zw8
title: Ochlodes Scudder, 1872

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/rrx-p0x-dth
title: Ceramica pisi Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/1f7-f6t-4m9
title: Udea lutealis Hübner, 1809

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/2p5-0pq-8al
title: Eudonia murana Curtis, 1827

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/7z0-hc7-qlc
title: Pterostoma palpina (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/s6p-ld2-cnp
title: Agonopterix heracliana Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/2lr-trj-pav
title: Pterostoma palpina (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/1c9-gvc-hhj
title: Agriades Hübner, 1819

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/z0v-l1d-ef0
title: Agriades Hübner, 1819

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/4ln-v44-35q
title: Nyea lurideola (Zincken, 1817)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/hwa-5f1-8x8
title: Caradrina (Caradrina) morpheus (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/jk1-dep-d43
title: Epirrhoe tristata (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/7sd-4gd-w64
title: Selagia spadicella Hübner, 1796

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/nm8-k34-0nq
title: Nymphalis antiopa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/qm7-bv0-fg0
title: Pterostoma palpina (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/tee-18f-vkw
title: Pterostoma palpina (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/wnd-1fp-7r5
title: Nymphalis antiopa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/2yf-80q-hga
title: Ptilodon capucina (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/8sz-555-3ke
title: Ochlodes Scudder, 1872

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/t9g-4d0-j4q
title: Udea lutealis Hübner, 1809

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/036-hfs-l1m
title: Pleurota bicostella (Clerck, 1761)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/gex-jxk-esg
title: Caradrina (Caradrina) morpheus (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/4wf-ydd-133
title: Issoria lathonia (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/cp4-l34-178
title: Colias hecla Lefèbvre, 1836

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/9mh-ppm-ahn
title: Agonopterix heracliana Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/rsh-pbe-f5t
title: Udea lutealis Hübner, 1809

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/aqx-rwq-235
title: Nymphalis antiopa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/t7y-v5l-gar
title: Nymphalis antiopa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/gcg-13n-7fa
title: Dendrolimus pini (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/hrk-87v-xfv
title: Ochlodes Scudder, 1872

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/8ax-8ja-66k
title: Dendrolimus pini (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/734-4ay-s7r
title: Udea lutealis Hübner, 1809

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/e6n-anb-m48
title: Dasypolia (Dasypolia) templi Thunberg, 1792

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/nw4-whx-wwb
title: Erebia embla Thunberg, 1791

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/qvr-pya-5wm
title: Polychrysia moneta (Fabricius, 1787)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/nam-pgm-550
title: Agriades Hübner, 1819

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/l2q-81l-zjg
title: Argynnis paphia (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/ryw-78t-p04
title: Hypena proboscidalis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/qmr-ym9-h3k
title: Caradrina (Caradrina) morpheus (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/pxg-k26-z5l
title: Trachea atriplicis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/yjr-yhd-y75
title: Catoptria pinella Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/8vq-1ct-8rx
title: Mniotype satura [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/sjq-czt-2sg
title: Charanyca (Charanyca) trigrammica (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/a67-5et-hs1
title: Udea lutealis Hübner, 1809

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/dse-axy-jfr
title: Nymphalis antiopa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/63y-4er-dm3
title: Charanyca (Charanyca) trigrammica (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/jzk-asq-6e0
title: Ochlodes Scudder, 1872

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/9ms-bkm-prw
title: Coscinia cribraria (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/c0r-7lw-3qf
title: Udea lutealis Hübner, 1809

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/ztp-2zp-lny
title: Leucodonta bicoloria ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/b6c-e4j-lh8
title: Eulithis pyropata (Hübner, [1809])

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/3f0-emp-86m
title: Arctia plantaginis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/j39-ktf-1cp
title: Catoptria pinella Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/jec-jk9-31d
title: Anarta (Anarta) myrtilli Linnaeus, 1761

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/js7-pdj-dk2
title: Blepharita amica Treitschke, 1825

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/nz2-9t1-vgd
title: Hypena proboscidalis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15468/dl.e8npkv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((110.976 -2.231824, 110.905684 -2.237389, 110.837097 -2.253947, 110.771928 -2.281092, 110.711779 -2.318154, 110.65813 -2.364223, 110.612303 -2.418165, 110.575426 -2.478652, 110.548407 -2.544196, 110.531914 -2.613184, 110.526352 -2.683917, 110.531863 -2.754654, 110.54831 -2.823653, 110.575293 -2.889215, 110.612146 -2.949725, 110.657965 -3.003692, 110.711622 -3.049786, 110.771794 -3.086871, 110.837 -3.114034, 110.905633 -3.130604, 110.976 -3.136173, 111.046367 -3.130604, 111.115 -3.114034, 111.180206 -3.086871, 111.240378 -3.049786, 111.294035 -3.003692, 111.339854 -2.949725, 111.376707 -2.889215, 111.40369 -2.823653, 111.420137 -2.754654, 111.425648 -2.683917, 111.420086 -2.613184, 111.403593 -2.544196, 111.376574 -2.478652, 111.339697 -2.418165, 111.29387 -2.364223, 111.240221 -2.318154, 111.180072 -2.281092, 111.114903 -2.253947, 111.046316 -2.237389, 110.976 -2.231824))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031467-251120083545085/datasets/export for details.
DOI: 10.3535/r34-lcy-tbt
title: Ochlodes Scudder, 1872

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/tcc-ewm-s3x
title: Macrothylacia rubi (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/wdl-0ab-dt0
title: Udea lutealis Hübner, 1809

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/h6e-q51-3x2
title: Herminia tarsicrinalis (Knoch, 1782)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/r7g-plb-sch
title: Agriades Hübner, 1819

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/n8t-0g3-dlt
title: Caradrina (Caradrina) morpheus (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/1jr-rds-daf
title: Hypena proboscidalis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/mhb-998-v8s
title: Agriades Hübner, 1819

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/c7s-8qn-enj
title: Colocasia coryli (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/mtd-9w2-aq5
title: Colias tyche (Böber, 1812)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/r1k-1yn-qyt
title: Caradrina (Caradrina) morpheus (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/x0t-tca-cpn
title: Pleurota bicostella (Clerck, 1761)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/grd-5cf-llt
title: Caradrina (Caradrina) morpheus (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/6bl-9sg-zps
title: Trachea atriplicis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/z0f-sh2-e6l
title: Cosmia (Calymnia) trapezina (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/lwq-j9a-73v
title: Pheosia gnoma (Fabricius, 1776)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/6sj-fa9-3ev
title: Arctia plantaginis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/ntk-vqr-n3j
title: Lacanobia (Dianobia) contigua [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/t22-cg8-5wl
title: Colias tyche (Böber, 1812)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/d03-wdg-2tj
title: Mniotype satura [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/j5p-2yr-kty
title: Abrostola tripartita (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/94j-cb3-92s
title: Agriphila tristellus [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/l1z-w6a-4w2
title: Udea lutealis Hübner, 1809

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v83-6wt-wjk
title: Mniotype satura [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/hsj-266-6z6
title: Nymphalis antiopa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/j3y-3pz-398
title: Agriphila tristellus [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/hw4-ly5-aa2
title: Catoptria margaritellus [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/qjd-r01-sp9
title: Acrobasis repandana Fabricius, 1798

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/2fs-779-yxb
title: Lacanobia (Dianobia) contigua [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/ze2-44l-glk
title: Colocasia coryli (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.5281/zenodo.10782799
title: EATRIS-Plus multi-omics data of a human reference cohort

description: In this reference study, blood samples of 125 healthy individuals were analyzed with a wide range of -omics technologies, resulting in the most comprehensive -omics profiling data set that is publicly available. The molecular measurements that are available here, can be used as reference values for any future (multi-)omics studyies. Along with phenotypic information (Sex, Age, BMI etc. and measured cell types levels) on the healthy subjects, the following data types are included:



Targeted metabolomics (acylcarnitines, amino acids and very long chain fatty acids)

Lipidomics 

Proteomics

mRNA-seq

miRNA-seq

miRNA qRT-PCR

Enzymation Methylation sequencing


 

The pre-processed mult-omics data can be accessed here in the shape of a MultiAssayExperiment object (Ramos et al. 2017). Instructions on how to read the object into R can be found here: Read_MultiAssayExperiment. Use the files 'mae_experiments.h5' and 'mae_mae.rds' for this.

In addition, a similar object for Python (MuData) including the same omics data has been included. Documentation on how to read this file can be found here: mudata.readthedocs.io. Use the file 'EATRIS-PLUS_MuData.h5mu' for this.

 

DATA AVAILABILITY STATEMENT:

Full data related to the EATRIS-Plus multiomic cohort are available in the ClinData repository (https://clindata.imtm.cz) and include full phenotypic information, physical and laboratory examinations, multiomic data from white blood cells (whole genome sequencing, enzymatic methylation DNA sequencing, mRNA sequencing, miRNA sequencing) or plasma (miRNA qPCR profiling, proteomics, targeted metabolomics, untargeted lipidomics, Raman spectroscopy profiling). However, access is restricted due to legal, ethical, scientific and/or commercial reasons. Access to the data is subject to approval and a data sharing transfer agreement. For data access please contact data.access@imtm.cz.
DOI: 10.5281/zenodo.17831254
title: EATRIS-Plus multi-omics data of a human reference cohort

description: In this reference study, blood samples of 125 healthy individuals were analyzed with a wide range of -omics technologies, resulting in the most comprehensive -omics profiling data set that is publicly available. The molecular measurements that are available here, can be used as reference values for any future (multi-)omics studyies. Along with phenotypic information (Sex, Age, BMI etc. and measured cell types levels) on the healthy subjects, the following data types are included:



Targeted metabolomics (acylcarnitines, amino acids and very long chain fatty acids)

Lipidomics 

Proteomics

mRNA-seq

miRNA-seq

miRNA qRT-PCR

Enzymation Methylation sequencing


 

The pre-processed mult-omics data can be accessed here in the shape of a MultiAssayExperiment object (Ramos et al. 2017). Instructions on how to read the object into R can be found here: Read_MultiAssayExperiment. Use the files 'mae_experiments.h5' and 'mae_mae.rds' for this.

In addition, a similar object for Python (MuData) including the same omics data has been included. Documentation on how to read this file can be found here: mudata.readthedocs.io. Use the file 'EATRIS-PLUS_MuData.h5mu' for this.

 

DATA AVAILABILITY STATEMENT:

Full data related to the EATRIS-Plus multiomic cohort are available in the ClinData repository (https://clindata.imtm.cz) and include full phenotypic information, physical and laboratory examinations, multiomic data from white blood cells (whole genome sequencing, enzymatic methylation DNA sequencing, mRNA sequencing, miRNA sequencing) or plasma (miRNA qPCR profiling, proteomics, targeted metabolomics, untargeted lipidomics, Raman spectroscopy profiling). However, access is restricted due to legal, ethical, scientific and/or commercial reasons. Access to the data is subject to approval and a data sharing transfer agreement. For data access please contact data.access@imtm.cz.