cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14618133
title: IODP Expedition 349 Closeup images

description: Close-up images taken by digital cameras as requested by the science party, typically when the section-half image is not sufficient. Close-up photographs of the areas of interest may be taken from whole-round sections, pieces, or section halves in sediments and rock.
DOI: 10.5281/zenodo.14618393
title: IODP Expedition 349 Hole summary

description: Report lists hole data: location, water depth, drilling, coring system, and core recovery.
DOI: 10.5281/zenodo.14618394
title: IODP Expedition 349 Hole summary

description: Report lists hole data: location, water depth, drilling, coring system, and core recovery.
DOI: 10.15468/dl.pxt7cp
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Catasetum seccoi M.F.F.Silva & A.T.Oliveira"
 ]
}

 The dataset includes 7 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061756-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6wsr5p
title: Occurrence Download

description: A dataset containing 118344 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cornus mas L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 118344 records from 856 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061733-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14610022
title: GL-LSTM-Donor

description: Great Lakes rainfall-runoff models using deep learning.
DOI: 10.5281/zenodo.14618584
title: GL-LSTM-Donor

description: Great Lakes rainfall-runoff models using deep learning.
DOI: 10.5281/zenodo.14618590
title: Demographic and expression information

description: The dataset includes demographic information and log-transformed counts per million for the 383 miRNAs analyzed in the study by Reho et al. (PMID: xxxxxxx)
DOI: 10.5281/zenodo.14618591
title: Demographic and expression information

description: The dataset includes demographic information and log-transformed counts per million for the 383 miRNAs analyzed in the study by Reho et al. (PMID: xxxxxxx)
DOI: 10.15468/dl.kp9x39
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is CAS Mammalogy (MAM)",
 "TaxonKey is Melursus ursinus (Shaw, 1791)"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061757-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.twf535
title: Occurrence Download

description: A dataset containing 186529 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Botany Division, Yale Peabody Museum"
 ]
}

 The dataset includes 186529 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061682-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nefpam
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Buchnera nordestina Scatigna"
 ]
}

 The dataset includes 13 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061758-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bmjfp5
title: Occurrence Download

description: A dataset containing 1017 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes aegypti (Linnaeus, 1762)",
 "Country is Indonesia",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 1017 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061759-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tm3xfx
title: Occurrence Download

description: A dataset containing 7268 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "MediaType is Image",
 "OccurrenceStatus is Present",
 "StateProvince is California",
 "TaxonKey is Canis latrans Say, 1823",
 "Year 1990-2020"
 ]
}

 The dataset includes 7268 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061760-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2lpf3v
title: CCDC 2403867: Experimental Crystal Structure Determination

description: Related Article: J.P. Bajko, R.J. Staples, S.M. Biros|2024|Acta Crystallogr.,Sect.E:Cryst.Commun.|80|1318|doi:10.1107/S2056989024011253
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lphld
title: CCDC 2403944: Experimental Crystal Structure Determination

description: Related Article: Ziroat E. Urunbaeva, Kambarali K. Turgunov, Abdusalom Sh. Saidov, Valentina I. Vinogradova|2024|Acta Crystallogr.,Sect.E:Cryst.Commun.|80|1322|doi:10.1107/S2056989024011277
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lpr9c
title: CCDC 2404183: Experimental Crystal Structure Determination

description: Related Article: Y.S. Bibik, I.M. Yulakh, S.V. Shishkina, D.M. Khomenko, R.O. Doroshchuk, I.V. Raspertova, R.D. Lampeka|2024|Acta Crystallogr.,Sect.E:Cryst.Commun.|80|1350|doi:10.1107/S2056989024011307
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lprbd
title: CCDC 2404184: Experimental Crystal Structure Determination

description: Related Article: Y.S. Bibik, I.M. Yulakh, S.V. Shishkina, D.M. Khomenko, R.O. Doroshchuk, I.V. Raspertova, R.D. Lampeka|2024|Acta Crystallogr.,Sect.E:Cryst.Commun.|80|1350|doi:10.1107/S2056989024011307
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6073/pasta/db922e4343c92b183c0c64eb6943a722
title: Long-term composited Normalized Difference Vegetation Index (NDVI) for the greater Phoenix, Arizona, USA, metropolitan area and the surrounding Sonoran desert derived from annual and seasonal Landsat imagery, 1998 to 2023

description: ### overview

This data package consists of multiple decades of normalized difference vegetation index (NDVI) raster data across the Central Arizona-Phoenix Long-Term Ecological Research (CAP LTER) study area within metropolitan Phoenix, Arizona (USA), temporally aggregated by year and by four meteorological seasons (Winter, Spring, Summer, Fall). To serve as a proxy measurement of vegetation greenness and productivity across years and seasons, NDVI was derived from annual and seasonal composites of 30-m resolution Landsat 5-9 Level-2 Surface Reflectance imagery. All imagery retrieval and data processing were completed with Google Earth Engine (Gorelick et al. 2017) and program R. A complete description of data processing methods, including the aggregation of imagery by year and season and the calculation of the spectral index, can be found in the data package metadata (see 'Methods and Protocols') and accompanying Javascript code.

### citations

- Gorelick N, Hancher M, Dixon M, et al. (2017) Google Earth Engine: Planetary-scale geospatial analysis for everyone. Remote Sensing of Environment 202:18–27. https://doi.org/10.1016/j.rse.2017.06.031
DOI: 10.5281/zenodo.14611138
title: Data of "Tweezer-Assisted Subwavelength Positioning of Atomic Arrays in an Optical Cavity"
DOI: 10.5281/zenodo.14611139
title: Data of "Tweezer-Assisted Subwavelength Positioning of Atomic Arrays in an Optical Cavity"
DOI: 10.15468/dl.2yzcf3
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psychotria duckei Standl."
 ]
}

 The dataset includes 9 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061762-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ze7ns
title: Occurrence Download

description: A dataset containing 5030692 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Naturalis Biodiversity Center (NL) - Botany"
 ]
}

 The dataset includes 5030692 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061690-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vgk2ax
title: Occurrence Download

description: A dataset containing 4503 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.49_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Andrenidae"
 ]
}

 The dataset includes 4503 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061763-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u5tv27
title: Occurrence Download

description: A dataset containing 290930 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Naturalis Biodiversity Center (NL) - Aves"
 ]
}

 The dataset includes 290930 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061686-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27948462
title: Colorado lynx SDM dataset

description: This dataset was used to model Canada lynx habitat distribution in the southern Rocky Mountains, USA, in the publication "Anthropogenically protected but naturally disturbed: a specialist carnivore at its southern range periphery". The data provided were used in the best performing model, referred to as the "Combined" model in the publication, and can be used in a species distribution modeling context to replicate the results of the habitat model presented in the paper. Covariate names match those given in Figure 4 of the publication.FOR SPATIAL VERSIONS OF MODEL PREDICTIONS, PLEASE CONTACT JOHN SQUIRES AT john.squires@usda.gov
DOI: 10.15468/dl.ugrb3c
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes aegypti (Linnaeus, 1762)",
 "Country is Malaysia",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 109 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061764-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ht8uyz
title: Occurrence Download

description: A dataset containing 593697 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "TaxonKey is one of (Acer platanoides L., Adelges tsugae Annand, 1924, Agrilus planipennis Fairmaire, 1888, Alliaria petiolata (M.Bieb.) Cavara & Grande, Channa argus (Cantor, 1842), Crocodylus niloticus Laurenti, 1768, Dreissena polymorpha (Pallas, 1771), Faxonius rusticus (Girard, 1852), Frangula alnus Mill., Heracleum mantegazzianum Sommier & Levier, Heracleum sphondylium L., Hydrocharis morsus-ranae L., Impatiens glandulifera Royle, Kali tragus (L.) Scop., Lissachatina fulica (Bowdich, 1822), Lycorma delicatula (White, 1845), Myriophyllum spicatum L., Phragmites australis subsp. australis, Potamogeton crispus L., Pterois volitans (Linnaeus, 1758), Pueraria lobata (Willd.) Ohwi, Python bivittatus Kuhl, 1820, Reynoutria japonica Houtt., Reynoutria sachalinensis (F.Schmidt) Nakai, Reynoutria ×bohemica Chrtek & Chrtková, Rhamnus cathartica L., Rhinella marina (Linnaeus, 1758), Stratiotes aloides L., Trapa natans L., Vincetoxicum nigrum (L.) Moench, Vincetoxicum rossicum (Kleopow) Barbar.)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 593697 records from 591 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061734-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p13bdehg
title: Human-modified ponded features mapped within the Willamette River floodplain, Oregon, in 2018

description: The floodplains of the Willamette River and its major tributaries in western Oregon comprise a diverse array of natural and human-modified features that collectively support a wide range of habitats used by native fish and other wildlife. Like other large alluvial rivers, the Willamette River floodplain has many water bodies disconnected from the main river channel throughout most of the year. These features consist of relict channel features abandoned through channel migration or avulsion, as well as human-modified features such as irrigation ponds and gravel pits where rock and aggregate were formerly mined for commercial purposes. Since 2008, large-scale restoration programs have been implemented along the Willamette River and its major tributaries to address historical losses of floodplain habitats caused by dam construction, bank stabilization, and various land-use changes (Keith and others, 2022). One restoration strategy to improve habitats used by native fish has been to modify former gravel pits. Gravel pit restoration has included a variety of site-specific strategies such as improving hydraulic connectivity with nearby river channels, modifying pond topography to reduce fish stranding, and planting native vegetation (Keith and others, 2022). Because gravel pit restoration was identified as a key focus for floodplain restoration (Anchor Habitats Working Group [AHWG], 2015), stakeholders in the Willamette River Basin identified a need for a map showing the distribution of floodplain ponds that may have been human-modified and that may be candidates for future restoration activities. Hence, ponded features were mapped from 2018 aerial photographs (Oregon State Imagery Program [OSIP], 2018) to document the locations and spatial distribution of sites where gravel extraction or other human modifications may have resulted in pond topography or characteristics that differ from disconnected floodplain channels likely created through natural fluvial processes (such as abandoned oxbow channels). No attempt was made to confirm the type or extensiveness of human activities that have occurred within the mapped ponded features. This mapping dataset, together with other mapping resources, is intended to be a useful starting point for considering the locations, sizes, and distribution of human-modified ponded features (including former gravel pits) in the Willamette River floodplain and identifying potential priorities for future restoration. The 2-year recurrence interval floodplain (mapping by River Design Group, Inc., 2012), for example, is often used to plan and prioritize floodplain restoration and conservation efforts because the boundary is clearly defined and maps are publicly available (Keith and others, 2022). The mapping of human-modified ponded features encompassed areas within the Holocene (or geomorphic) floodplain of the alluvial reaches of the Willamette River (from Newberg to Eugene).
DOI: 10.34740/kaggle/dsv/10407472
title: Top Spotify Songs in 73 Countries (Daily Updated)
DOI: 10.15468/dl.rwxfe8
title: Occurrence Download

description: A dataset containing 850808 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "DatasetKey is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 850808 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061761-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9jk9ap
title: Occurrence Download

description: A dataset containing 885 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes aegypti (Linnaeus, 1762)",
 "Country is Thailand",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 885 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061765-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14614206
title: Linkage-Disequilibrium (LD) matrices for six continental ancestry groups from the UK Biobank

description: This dataset contains Linkage Disequilibrium (LD) matrices for six ancestry groups from the UK Biobank.

LD matrices record the SNP-by-SNP correlations in a given sample of individuals from the general population. In this case, we threshold the matrices so that we only record the correlations between variants in the same LD block (defined by LDetect). The continental ancestry groups are defined by the Pan-UKB initiative as:



EUR = European ancestry (N=362446)

CSA = Central/South Asian ancestry (N=8284)

AFR = African ancestry (N=6255)

EAS = East Asian ancestry (N=2700)

MID = Middle Eastern ancestry (N=1567)

AMR = Admixed American ancestry (N=987)


The sample sizes here are restricted to unrelated individuals in the UK Biobank. The matrices were computed using  magenpy and quantized to int8 data type for better compressibility. The standard matrices (EUR.tar.gz, AFR.tar.gz, ...) contain pairwise correlations for 1.4 million HapMap3+ variants. For European samples, we also provide LD matrices that record pairwise correlations for up to 18 million variants (EUR_18m_variants.tar.gz)

For more details on how these matrices were computed, please consult our manuscript:

Towards whole-genome inference of polygenic scores with fast and memory-efficient algorithmsShadi Zabad, Chirayu Anant Haryan, Simon Gravel, Sanchit Misra, Yue Li

To access these matrices, consult the codebase of magenpy, our custom python package with special data structures for processing these LD matrices.
DOI: 10.5281/zenodo.14614207
title: Linkage-Disequilibrium (LD) matrices for six continental ancestry groups from the UK Biobank

description: This dataset contains Linkage Disequilibrium (LD) matrices for six ancestry groups from the UK Biobank.

LD matrices record the SNP-by-SNP correlations in a given sample of individuals from the general population. In this case, we threshold the matrices so that we only record the correlations between variants in the same LD block (defined by LDetect). The continental ancestry groups are defined by the Pan-UKB initiative as:



EUR = European ancestry (N=362446)

CSA = Central/South Asian ancestry (N=8284)

AFR = African ancestry (N=6255)

EAS = East Asian ancestry (N=2700)

MID = Middle Eastern ancestry (N=1567)

AMR = Admixed American ancestry (N=987)


The sample sizes here are restricted to unrelated individuals in the UK Biobank. The matrices were computed using  magenpy and quantized to int8 data type for better compressibility. The standard matrices (EUR.tar.gz, AFR.tar.gz, ...) contain pairwise correlations for 1.4 million HapMap3+ variants. For European samples, we also provide LD matrices that record pairwise correlations for up to 18 million variants (EUR_18m_variants.tar.gz)

For more details on how these matrices were computed, please consult our manuscript:

Towards whole-genome inference of polygenic scores with fast and memory-efficient algorithmsShadi Zabad, Chirayu Anant Haryan, Simon Gravel, Sanchit Misra, Yue Li

To access these matrices, consult the codebase of magenpy, our custom python package with special data structures for processing these LD matrices.