cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12873290.v17
title: Additional file of RNA-seq: technical variability and sampling

description: Additional file of RNA-seq: technical variability and sampling
DOI: 10.6084/m9.figshare.12873266.v1
title: Additional file 2 of RNA-seq: technical variability and sampling

description: Additional file 2:Chromosome postions for overlapping exons combined into single genomic regions. Format TSV. View with Wordpad. (TSV 3 MB)
DOI: 10.6084/m9.figshare.12873290.v16
title: Additional file of RNA-seq: technical variability and sampling

description: Additional file of RNA-seq: technical variability and sampling
DOI: 10.6084/m9.figshare.12873272.v1
title: Additional file 4 of RNA-seq: technical variability and sampling

description: Additonal File 4:Perl script that converts contiguous sequences in a SAMtools consensus pileup to FASTA, BED, or coordinate tables. Format PL. View with Wordpad. (PL 5 KB)
DOI: 10.6084/m9.figshare.12873275
title: Additional file 5 of RNA-seq: technical variability and sampling

description: Additional file 5:Perl script to find common sequences from contig BEDs. Format PL. View with Wordpad. (PL 3 KB)
DOI: 10.6084/m9.figshare.12873275.v1
title: Additional file 5 of RNA-seq: technical variability and sampling

description: Additional file 5:Perl script to find common sequences from contig BEDs. Format PL. View with Wordpad. (PL 3 KB)
DOI: 10.6084/m9.figshare.12873284.v1
title: Additional file 8 of RNA-seq: technical variability and sampling

description: Additional file 8:St_2c_167_common_contigs.bed. BED file containing chromosome postion, start, end and common_contig_ID for c167 experiment (Experiment 3). Format BED. View with Wordpad. (BED 759 KB)
DOI: 10.6084/m9.figshare.12873284
title: Additional file 8 of RNA-seq: technical variability and sampling

description: Additional file 8:St_2c_167_common_contigs.bed. BED file containing chromosome postion, start, end and common_contig_ID for c167 experiment (Experiment 3). Format BED. View with Wordpad. (BED 759 KB)
DOI: 10.6084/m9.figshare.12873278
title: Additional file 6 of RNA-seq: technical variability and sampling

description: Additional file 6:St_2a_D.melanogaster_common_contigs.bed. BED file containing chromosome postion, start, end and common_contig_ID for D. melanogaster experiment (Experiment 1). Format BED. View with Wordpad. (BED 704 KB)
DOI: 10.6084/m9.figshare.12873287
title: Additional file 9 of RNA-seq: technical variability and sampling

description: Additional file 9:Agreement between technical replicates and biological replicates for RPKM measured on common contigs. A comparison in the agreement of the estimation of the amount of expression. Agreement in whether common contigs are expressed, expressed at a low level (0 &lt; RPKM &lt; 20), and expressed at a high level (RPKM &gt; 20) and agreement on a 9 level ordinal scale as follows: RPKM less than 10, 20, 40, 80, 160, 320, 1000 and greater than 1000. Agreement was measured using a kappa coefficient. The number of common contigs where disagreement is greater than 2 logs and greater than one log are also given. Format XLS. View with Excel. (XLSX 10 KB)
DOI: 10.6084/m9.figshare.12873287.v1
title: Additional file 9 of RNA-seq: technical variability and sampling

description: Additional file 9:Agreement between technical replicates and biological replicates for RPKM measured on common contigs. A comparison in the agreement of the estimation of the amount of expression. Agreement in whether common contigs are expressed, expressed at a low level (0 &lt; RPKM &lt; 20), and expressed at a high level (RPKM &gt; 20) and agreement on a 9 level ordinal scale as follows: RPKM less than 10, 20, 40, 80, 160, 320, 1000 and greater than 1000. Agreement was measured using a kappa coefficient. The number of common contigs where disagreement is greater than 2 logs and greater than one log are also given. Format XLS. View with Excel. (XLSX 10 KB)
DOI: 10.6084/m9.figshare.12873290
title: Additional file of RNA-seq: technical variability and sampling

description: Additional file of RNA-seq: technical variability and sampling
DOI: 10.6084/m9.figshare.12873266
title: Additional file 2 of RNA-seq: technical variability and sampling

description: Additional file 2:Chromosome postions for overlapping exons combined into single genomic regions. Format TSV. View with Wordpad. (TSV 3 MB)
DOI: 10.6084/m9.figshare.12873281
title: Additional file 7 of RNA-seq: technical variability and sampling

description: Additional file 7:St_2b_Dsimulans_common_contigs.bed. BED file containing chromosome postion, start, end and common_contig_ID for D. simulans (Experiment 2). Format BED. View with Wordpad. (BED 800 KB)
DOI: 10.6084/m9.figshare.12873278.v1
title: Additional file 6 of RNA-seq: technical variability and sampling

description: Additional file 6:St_2a_D.melanogaster_common_contigs.bed. BED file containing chromosome postion, start, end and common_contig_ID for D. melanogaster experiment (Experiment 1). Format BED. View with Wordpad. (BED 704 KB)
DOI: 10.6084/m9.figshare.7991171
title: supplementary tables to Zorz et al 2019

description: Supplementary Tables associated with "A shared core microbiome in soda lakes separated by large distances" by Jackie K Zorz, Christine Sharp, Manuel Kleiner, Paul MK Gordon, Richard Pon, Xiaoli Dong, Marc Strous
DOI: 10.6084/m9.figshare.7991189
title: Dataset for: Sequential trials in the context of competing risks: concepts and case study, with R and SAS code

description: Sequential designs and competing risks methodology are both well established. Their combined use has recently received some attention from a theoretical perspective, but their joint application in practice has been discussed less. The aim of this paper is to provide the applied statistician with a basic understanding of both sequential design theory and competing risks methodology and how to combine them in practice. Relevant references to more detailed theoretical discussions are provided and all discussions are illustrated using a real case study. Extensive R and SAS code is provided in the online supplementary material.
DOI: 10.6084/m9.figshare.12873281.v1
title: Additional file 7 of RNA-seq: technical variability and sampling

description: Additional file 7:St_2b_Dsimulans_common_contigs.bed. BED file containing chromosome postion, start, end and common_contig_ID for D. simulans (Experiment 2). Format BED. View with Wordpad. (BED 800 KB)
DOI: 10.6084/m9.figshare.12873290.v21
title: Additional file of RNA-seq: technical variability and sampling

description: Additional file of RNA-seq: technical variability and sampling
DOI: 10.6084/m9.figshare.7991171.v1
title: supplementary tables to Zorz et al 2019

description: Supplementary Tables associated with "A shared core microbiome in soda lakes separated by large distances" by Jackie K Zorz, Christine Sharp, Manuel Kleiner, Paul MK Gordon, Richard Pon, Xiaoli Dong, Marc Strous
DOI: 10.6084/m9.figshare.12873269
title: Additional file 3 of RNA-seq: technical variability and sampling

description: Additional file 3:Perl script for mapping between exons and a genome region. Format PL. View with Wordpad. (PL 2 KB)
DOI: 10.6084/m9.figshare.12873290.v20
title: Additional file of RNA-seq: technical variability and sampling

description: Additional file of RNA-seq: technical variability and sampling
DOI: 10.6084/m9.figshare.7991084
title: CCDB_3750.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7991117
title: Ontogeny of effective mechanical advantage in Eastern Cottontail Rabbits

description: Ontogenetic data on effective mechanical advantage at the hip, knee, and ankle in Eastern Cottontail Rabbits (<i>Sylvilagus floridanus</i>).
DOI: 10.6084/m9.figshare.7991078
title: CCDB_3749.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7991084.v1
title: CCDB_3750.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7991117.v1
title: Ontogeny of effective mechanical advantage in Eastern Cottontail Rabbits

description: Ontogenetic data on effective mechanical advantage at the hip, knee, and ankle in Eastern Cottontail Rabbits (<i>Sylvilagus floridanus</i>).
DOI: 10.6084/m9.figshare.7991072
title: Development of a filter that mimics tracheobronchial deposition of respirable aerosols in humans

description: This article describes the development of a filter that mimics average tracheobronchial deposition in the human respiratory tract for particle diameters and inhalation flow rates relevant for inhaled pharmaceutical aerosols. To design the filter, a combination of classical filter theory, computational fluid dynamics, and experimental filtration measurements was used. From these results, a predictive model was developed and used to determine optimal filter parameter values prior to building the filter. Experiments were then performed with nebulized jojoba oil aerosols, using an Electrical Low Pressure Impactor (ELPI) to measure filtration efficiency versus particle diameter in the range of 0.5–5.5 µm. Experiments were conducted for both constant flow rates and tidal inhalation profiles with average flow rates over the range of 15–90 L/min. When compared with various existing empirical models of tracheobronchial deposition, the purpose-built filter was observed to closely mimic tracheobronchial deposition and its dependence on particle diameter and flow rate for the range explored. As intended by design, instantaneous filter performance was found to be unaffected by time dependence of the inhalation flow profile. When placed downstream of a mouth-throat replica, the present filter may be useful for bench-top estimation of regional lung delivery with inhalers, particularly when tested during breath simulation. Copyright © 2019 American Association for Aerosol Research
DOI: 10.6084/m9.figshare.7991075
title: CCDB_3748.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for EphA4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7991078.v1
title: CCDB_3749.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.12873290.v19
title: Additional file of RNA-seq: technical variability and sampling

description: Additional file of RNA-seq: technical variability and sampling
DOI: 10.6084/m9.figshare.7991063
title: CCDB_3747.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7991057
title: Gut microbiome gene catalog, 50% amino acid identity

description: Non-redundant microbial gene catalog (clustered at 50% sequence identity) from 2,182 gut microbiome shotgun metagenomic samples.<br>This is one of two raw output files from CD-HIT. It is a fasta file containing the sequences of the consensus genes – the longest genes in each cluster – as well as their ID's. These ID's map back to the second CD-HIT output file, the cluster (extension: .clstr) file.<br>
DOI: 10.6084/m9.figshare.7991060
title: CCDB_3746.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7991063.v1
title: CCDB_3747.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7991075.v1
title: CCDB_3748.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for EphA4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.12873290.v18
title: Additional file of RNA-seq: technical variability and sampling

description: Additional file of RNA-seq: technical variability and sampling
DOI: 10.6084/m9.figshare.7991060.v1
title: CCDB_3746.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7991057.v1
title: Gut microbiome gene catalog, 50% amino acid identity

description: Non-redundant microbial gene catalog (clustered at 50% sequence identity) from 2,182 gut microbiome shotgun metagenomic samples.<br>This is one of two raw output files from CD-HIT. It is a fasta file containing the sequences of the consensus genes – the longest genes in each cluster – as well as their ID's. These ID's map back to the second CD-HIT output file, the cluster (extension: .clstr) file.<br>
DOI: 10.6084/m9.figshare.7991012
title: npd_data_n3

description: RDF triples about NPD dataset
DOI: 10.6084/m9.figshare.7991033
title: Gut microbiome gene catalog cluster file, 95% nucleotide identity

description: Non-redundant microbial gene catalog cluster file (clustered at 95% sequence identity) from 1,473 oral microbiome shotgun metagenomic samples.<br>This is one of two raw output files from CD-HIT. Each cluster is marked in the left column with a "&gt;," and there is one cluster per consensus genes in the gene catalog files. The ID's in the right column are the genes within a cluster, with the consensus gene marked with an asterisk. Percent identity to the consensus gene is also described per gene ID.<br>
DOI: 10.6084/m9.figshare.7991012.v1
title: npd_data_n3

description: RDF triples about NPD dataset
DOI: 10.6084/m9.figshare.7990997
title: CCDB_3745.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7991033.v1
title: Gut microbiome gene catalog cluster file, 95% nucleotide identity

description: Non-redundant microbial gene catalog cluster file (clustered at 95% sequence identity) from 1,473 oral microbiome shotgun metagenomic samples.<br>This is one of two raw output files from CD-HIT. Each cluster is marked in the left column with a "&gt;," and there is one cluster per consensus genes in the gene catalog files. The ID's in the right column are the genes within a cluster, with the consensus gene marked with an asterisk. Percent identity to the consensus gene is also described per gene ID.<br>
DOI: 10.6084/m9.figshare.12873329.v5
title: Additional file of Genome-wide gene expression analysis supports a developmental model of low temperature tolerance gene regulation in wheat (Triticum aestivum L.)

description: Additional file of Genome-wide gene expression analysis supports a developmental model of low temperature tolerance gene regulation in wheat (Triticum aestivum L.)
DOI: 10.6084/m9.figshare.7990994
title: CCDB_3744.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.12873305.v1
title: Additional file 2 of Genome-wide gene expression analysis supports a developmental model of low temperature tolerance gene regulation in wheat (Triticum aestivum L.)

description: Additional file 2:Differentially expressed genes. Annotated list of 2771 differentially expressed genes that show GxT interaction. (XLS 974 KB)
DOI: 10.6084/m9.figshare.7990994.v1
title: CCDB_3744.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7990997.v1
title: CCDB_3745.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.12873305
title: Additional file 2 of Genome-wide gene expression analysis supports a developmental model of low temperature tolerance gene regulation in wheat (Triticum aestivum L.)

description: Additional file 2:Differentially expressed genes. Annotated list of 2771 differentially expressed genes that show GxT interaction. (XLS 974 KB)
DOI: 10.6084/m9.figshare.7990982
title: CCDB_3743.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7990976
title: CCDB_3742.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7991072.v2
title: Development of a filter that mimics tracheobronchial deposition of respirable aerosols in humans

description: This article describes the development of a filter that mimics average tracheobronchial deposition in the human respiratory tract for particle diameters and inhalation flow rates relevant for inhaled pharmaceutical aerosols. To design the filter, a combination of classical filter theory, computational fluid dynamics, and experimental filtration measurements was used. From these results, a predictive model was developed and used to determine optimal filter parameter values prior to building the filter. Experiments were then performed with nebulized jojoba oil aerosols, using an Electrical Low Pressure Impactor (ELPI) to measure filtration efficiency versus particle diameter in the range of 0.5–5.5 µm. Experiments were conducted for both constant flow rates and tidal inhalation profiles with average flow rates over the range of 15–90 L/min. When compared with various existing empirical models of tracheobronchial deposition, the purpose-built filter was observed to closely mimic tracheobronchial deposition and its dependence on particle diameter and flow rate for the range explored. As intended by design, instantaneous filter performance was found to be unaffected by time dependence of the inhalation flow profile. When placed downstream of a mouth-throat replica, the present filter may be useful for bench-top estimation of regional lung delivery with inhalers, particularly when tested during breath simulation. Copyright © 2019 American Association for Aerosol Research
DOI: 10.6084/m9.figshare.7990982.v1
title: CCDB_3743.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7991072.v4
title: Development of a filter that mimics tracheobronchial deposition of respirable aerosols in humans

description: This article describes the development of a filter that mimics average tracheobronchial deposition in the human respiratory tract for particle diameters and inhalation flow rates relevant for inhaled pharmaceutical aerosols. To design the filter, a combination of classical filter theory, computational fluid dynamics, and experimental filtration measurements was used. From these results, a predictive model was developed and used to determine optimal filter parameter values prior to building the filter. Experiments were then performed with nebulized jojoba oil aerosols, using an Electrical Low Pressure Impactor (ELPI) to measure filtration efficiency versus particle diameter in the range of 0.5–5.5 µm. Experiments were conducted for both constant flow rates and tidal inhalation profiles with average flow rates over the range of 15–90 L/min. When compared with various existing empirical models of tracheobronchial deposition, the purpose-built filter was observed to closely mimic tracheobronchial deposition and its dependence on particle diameter and flow rate for the range explored. As intended by design, instantaneous filter performance was found to be unaffected by time dependence of the inhalation flow profile. When placed downstream of a mouth-throat replica, the present filter may be useful for bench-top estimation of regional lung delivery with inhalers, particularly when tested during breath simulation. Copyright © 2019 American Association for Aerosol Research
DOI: 10.6084/m9.figshare.7990976.v1
title: CCDB_3742.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7990955
title: RNA sequencing data supplemental file 1.xls

description: RNA sequencing analysis of left ventricular tissue isolated from rats subjected to a predator-based psychosocial stress model of posttraumatic stress disorder.
DOI: 10.6084/m9.figshare.7990925
title: tower_flash_1593

description: raw optical and electric field data for tower flash 1593
DOI: 10.6084/m9.figshare.7990955.v1
title: RNA sequencing data supplemental file 1.xls

description: RNA sequencing analysis of left ventricular tissue isolated from rats subjected to a predator-based psychosocial stress model of posttraumatic stress disorder.
DOI: 10.6084/m9.figshare.7988795
title: imdb_data_with_rdf_schema

description: RDF triples about IMDb (with RDF schema)
DOI: 10.6084/m9.figshare.7990880
title: mondial_data_without_rdf_schema

description: RDF triples about Mondial (without RDF schema) and inforank computed
DOI: 10.6084/m9.figshare.7990880.v1
title: mondial_data

description: RDF triples about Mondial (without RDF schema)
DOI: 10.6084/m9.figshare.7988795.v1
title: imdb_data_n3

description: RDF triples about IMDb (with schema)