cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7783117
title: Processed data to regenerate figures in Noecker et al, "Systems biology elucidates the distinctive metabolic niche filled by the human gut microbe Eggerthella lenta"

description: This archive contains the processed source data for the publication by Noecker et al, "Systems biology elucidates the distinctive metabolic niche filled by the human gut microbe <em>Eggerthella lenta</em>" (2023, in review). Data tables underlying each figure panel are included, except for the following panels: Figure S1A: Source data is in Table S1 of the publication Figure 6D: Source data can be found at NCBI GEO accession GSE212420 (supplementary counts data matrix) Raw metabolomics data can also be found at Metabolomics Workbench accession PR001620. Methods used to summarize these data and generate the figures are described in the manuscript Materials and Methods and figure captions. Code to generate all figures is also available at www.github.com/turnbaughlab/2022_Noecker_ElentaMetabolism and 10.5281/zenodo.7779454.
DOI: 10.6084/m9.figshare.22357339
title: Fat-free mass index proposal for body composition analysis in pediatric sport: A cross-sectional study

description: Raw. Data.
DOI: 10.6084/m9.figshare.22357339.v1
title: Fat-free mass index proposal for body composition analysis in pediatric sport: A cross-sectional study

description: Raw. Data.
DOI: 10.6084/m9.figshare.22357360
title: Sex Crime Colombia Municipalies

description: Sex Crime in Colombia 2010 a 2022 by municipalities. Cases by 100 K people
DOI: 10.5519/qd.4btr4cm0
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.13000103.v4
title: Stable isotope data for perch populations in German gravel pit lakes

description: These data were collected as part of the Baggersee project: https://www.igb-berlin.de/en/project/baggersee <br>Samples for stable isotope analysis were collected from 14 gravel pit lakes in Lower Saxony, Germany. Lakes' samples include fish (perch and cyprinids), zooplankton, benthic macroinvertebrates, and primary producers. <br>Analysis was completed by the Cornell Isotope Laboratory using a Thermo Delta V isotope ratio mass spectrometer interfaced to a NC2500 elemental analyzer. <br>all_isotope_data.csv: d15N and d13C values for all samples collected from 14 gravel pit lakes. TL indicates total length (mm) of perch individuals. <br>lakevar.2.csv: Lake data describing productivity, morphology, littoral structure. <br>weighted l2 by category.csv: Metabolic biomass of fish communties<br>si.analysis.repo.Rmd: Code for analysis investigating effects of productivity and littoral structure on ontogenetic niche shifts of perch communities. <br><br>
DOI: 10.6084/m9.figshare.13000103.v3
title: Stable isotope data for perch populations in German gravel pit lakes

description: These data were collected as part of the Baggersee project: https://www.igb-berlin.de/en/project/baggersee <br>Samples for stable isotope analysis were collected from 14 gravel pit lakes in Lower Saxony, Germany. Lakes' samples include fish (perch and cyprinids), zooplankton, benthic macroinvertebrates, and primary producers. <br>Analysis was completed by the Cornell Isotope Laboratory using a Thermo Delta V isotope ratio mass spectrometer interfaced to a NC2500 elemental analyzer. <br>all_isotope_data.csv: d15N and d13C values for all samples collected from 14 gravel pit lakes. TL indicates total length (mm) of perch individuals. <br>lakevar.2.csv: Lake data describing productivity, morphology, littoral structure. <br>weighted l2 by category.csv: Metabolic biomass of fish communties<br>si.analysis.repo.Rmd: Code for analysis investigating effects of productivity and littoral structure on ontogenetic niche shifts of perch communities. <br><br>
DOI: 10.6084/m9.figshare.21937148
title: delitos_sexuales_2010-2022_data.csv

description: Reports of sexual crimes reported from 1 January 2010 to 31 December 2022 by consulting the Crime Observatory of the Colombian National Police
DOI: 10.6084/m9.figshare.21937148.v1
title: delitos_sexuales_2010-2022_data.csv

description: Reports of sexual crimes reported from 1 January 2010 to 31 December 2022 by consulting the Crime Observatory of the Colombian National Police
DOI: 10.34992/vr19-3p10
title: James Bay Expedition 2022 StoryMap
DOI: 10.5519/qd.hfw8jn9t
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.7534071
title: The LOTUS Initiative for Open Natural Products Research: frozen dataset union wikidata (with metadata)

description: Dataset present on Wikidata used in the frame of the LOTUS Initiative: https://doi.org/10.7554/eLife.70780
DOI: 10.5281/zenodo.5794106
title: The LOTUS Initiative for Open Natural Products Research: frozen dataset union wikidata (with metadata)

description: Dataset present on Wikidata used in the frame of the LOTUS Initiative: https://doi.org/10.7554/eLife.70780
DOI: 10.5281/zenodo.7707621
title: Modular nanomagnet design for spin qubits confined in a linear chain

description: supporting data
DOI: 10.5281/zenodo.7707620
title: Modular nanomagnet design for spin qubits confined in a linear chain

description: supporting data
DOI: 10.6084/m9.figshare.3761562.v2540
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6073/pasta/a214384967e562c7bedc8a7680ebf23e
title: Yearly survey of barnacle settlement near creekbank plots at GCE LTER study sites in October 2013

description: To characterize spatial variation in barnacle recruitment at the creekbank, and across a gradient in salinity and distance to ocean, we deployed PVC poles to passive sample barnacle settlement. Eight poles were deployed between 4-5m apart adjacent to the creekbank vegetation monitoring plots at each GCE LTER permanent monitoring site each Fall beginning in 2012. These poles were then collected the following Fall and all barnacle that settled on the poles were identified and counted on 50cm-long sections of the 8, 3/4" diameter PVC poles. Although a few other barnacle species are occur within this estuary, only Chthamalus fragilis settled on the poles.
DOI: 10.6073/pasta/3b62fb548d3fd2a037137dfb850da77e
title: Long-term Burrowing Crab Population Abundance Data from the Georgia Coastal Ecosystems LTER Fall Marsh Monitoring Program

description: This data set includes long-term observational data on burrowing crab abundance at 10 Georgia Coastal Ecosystems marsh sites used for annual plant and invertebrate population monitoring. Crab abundance was determined by performing surveys of crab hole occurance within replicate 625 square centimeter quadrats and converting the counts to number per square meter. Surveys were performed annually during October within the mid-marsh and creek bank zones at GCE marsh study sites 1 through 10 (i.e. n = 4 per zone at each site). Surveys were also performed in an additional high marsh Juncus zone at several sites beginning in 2009 (i.e. n = 4 quadrats per site). Note that this census method does not differentiate which species made a particular hole and therefore only estimates total burrowing crab abundance, potentially including species Uca pugnax, Uca minax, Uca pugilator, Armases cinereum, Eurytium limosum, Sesarma reticulatum and Panopeus spp. Crab holes that are not actively maintained are quickly covered by tidal activity and other sediment disturbances, therefore plugged holes were assumed to be unoccupied and excluded from the counts. This data set includes cumulative observations from 2000 to 2021, and will be updated annually to include the prior year observations.
DOI: 10.6073/pasta/4575deb9a2875091ec108ab96d929067
title: Yearly survey of barnacle settlement near creekbank plots at GCE LTER study sites in October 2014

description: To characterize spatial variation in barnacle recruitment at the creekbank, and across a gradient in salinity and distance to ocean, we deployed PVC poles to passive sample barnacle settlement. Eight poles were deployed between 4-5m apart adjacent to the creekbank vegetation monitoring plots at each GCE LTER permanent monitoring site each Fall beginning in 2012. These poles were then collected the following Fall and all barnacle that settled on the poles were identified and counted on 50cm-long sections of the 8, 3/4" diameter PVC poles. Although a few other barnacle species are occur within this estuary, only two species settled on poles: Chthamalus fragilis and Balanus spp.
DOI: 10.6073/pasta/a56896a7c99fd12c9ade29666c3d1193
title: Yearly survey of barnacle settlement near creekbank plots at GCE LTER study sites in October 2015

description: To characterize spatial variation in barnacle recruitment at the creekbank, and across a gradient in salinity and distance to ocean, we deployed PVC poles to passive sample barnacle settlement. Eight poles were deployed between 4-5m apart adjacent to the creekbank vegetation monitoring plots at each GCE LTER permanent monitoring site each Fall beginning in 2012. These poles were then collected the following Fall and all barnacle that settled on the poles were identified and counted on 50cm-long sections of the 8, 3/4" diameter PVC poles. Although a few other barnacle species are occur within this estuary, only two species settled on poles: Chthamalus fragilis and Balanus spp.
DOI: 10.6073/pasta/3deb6d02860892dad51943a2db5acca2
title: Yearly survey of barnacle settlement near creekbank plots at GCE LTER study sites in October 2016

description: To characterize spatial variation in barnacle recruitment at the creekbank, and across a gradient in salinity and distance to ocean, we deployed PVC poles to passive sample barnacle settlement. Eight poles were deployed between 4-5m apart adjacent to the creekbank vegetation monitoring plots at each GCE LTER permanent monitoring site each Fall beginning in 2012. These poles were then collected the following Fall and all barnacle that settled on the poles were identified and counted on 50cm-long sections of the 8, 3/4" diameter PVC poles. Although a few other barnacle species are occur within this estuary, only two species settled on poles: Chthamalus fragilis and Balanus spp.
DOI: 10.6073/pasta/2c27c3284152c644b6d197c53060effb
title: Yearly survey of barnacle settlement near creekbank plots at GCE LTER study sites in October 2017

description: To characterize spatial variation in barnacle recruitment at the creekbank, and across a gradient in salinity and distance to ocean, we deployed PVC poles to passive sample barnacle settlement. Eight poles were deployed between 4-5m apart adjacent to the creekbank vegetation monitoring plots each GCE LTER permanent monitoring site each Fall beginning in 2012. These poles were then collected the following Fall and all barnacle that settled on the poles were identified and counted on 50cm-long sections of the 8, 3/4" diameter PVC poles. Although a few other barnacle species are occur within this estuary, only two species settled on poles: Chthamalus fragilis and Balanus spp.
DOI: 10.6084/m9.figshare.22357387
title: Dataset from: BPKEM: a biometric-based private key encryption and management framework for blockchain

description: This dataset contains the following two datasets: The Extended Yale Face Database B, Sokoto Coventry Fingerprint Dataset
DOI: 10.6084/m9.figshare.22357387.v1
title: Dataset from: BPKEM: a biometric-based private key encryption and management framework for blockchain

description: This dataset contains the following two datasets: The Extended Yale Face Database B, Sokoto Coventry Fingerprint Dataset
DOI: 10.6073/pasta/755b78dddf334933ee55628a0ceeaee7
title: Yearly survey of barnacle settlement near creekbank plots at GCE LTER study sites in October 2018

description: To characterize spatial variation in barnacle recruitment at the creekbank, and across a gradient in salinity and distance to ocean, we deployed PVC poles to passive sample barnacle settlement. Eight poles were deployed between 4-5m apart adjacent to the creekbank vegetation monitoring plots each GCE LTER permanent monitoring site each Fall beginning in 2012. These poles were then collected the following Fall and all barnacle that settled on the poles were identified and counted on 50cm-long sections of the 8, 3/4" diameter PVC poles. Although a few other barnacle species are occur within this estuary, only two species settled on poles: Chthamalus fragilis and Balanus spp. This year Geukensia and Oysters that settled on the poles were counted and recorded.
DOI: 10.6073/pasta/f21a329bbecbc0f8db4d3a9fc3bc4a36
title: Yearly survey of barnacle settlement near creekbank plots at GCE LTER study sites in October 2019

description: To characterize spatial variation in barnacle recruitment at the creekbank, and across a gradient in salinity and distance to ocean, we deployed PVC poles to passive sample barnacle settlement. Eight poles were deployed between 4-5m apart adjacent to the creekbank vegetation monitoring plots at each GCE LTER permanent monitoring site each Fall beginning in 2012. These poles were then collected the following Fall and all barnacle that settled on the poles were identified and counted on 50cm-long sections of the 8, 3/4" diameter PVC poles. Four species settled on poles and were counted and recorded: Chthamalus fragilis, Balanus spp., Geukensia demissa, and Oysters (Crassostrea virginica).
DOI: 10.6073/pasta/513a3a48fdb55d5cbb8acaf4c71cac57
title: Yearly survey of barnacle settlement near creekbank plots at GCE LTER study sites in October 2020

description: To characterize spatial variation in barnacle recruitment at the creekbank, and across a gradient in salinity and distance to ocean, we deployed PVC poles to passive sample barnacle settlement. Eight poles were deployed between 4-5m apart adjacent to the creekbank vegetation monitoring plots at each GCE LTER permanent monitoring site each Fall beginning in 2012. These poles were then collected the following Fall and all barnacle that settled on the poles were identified and counted on 50cm-long sections of the 8, 3/4" diameter PVC poles. Four species settled on poles and were counted and recorded: Chthamalus fragilis, Balanus spp., Geukensia demissa, and Oysters (Crassostrea virginica).
DOI: 10.6073/pasta/c3c396964bd614047dff782fb20d23b2
title: Long-term Barnacle Settlement Near Creekbank Plots from the Georgia Coastal Ecosystems LTER Fall Marsh Monitoring Program

description: This data set includes long-term observational data on barnacle recruitment at the creekbank, and across a gradient in salinity and distance to ocean. PVC poles were deployed to passively sample barnacle settlement. Eight poles were deployed between 4-5 meters apart adjacent to the creekbank vegetation monitoring plots at each GCE LTER permanent monitoring site each Fall beginning in 2012. These poles were then collected the following Fall and all barnacle that settled on the poles were identified and counted on 50cm-long sections of the 8, 3/4" diameter PVC poles. Although a few other barnacle species occur within this estuary, only two species settled on poles: Chthamalus fragilis and Balanus spp. Beginning in 2018, Geukensia dimissa and Oysters (Crassostrea virginica) that settled on the poles were also counted and recorded. This data set includes observations from 2013 to 2021 and will be updated annually to include the prior year observations.
DOI: 10.6073/pasta/8ef3d3d7c278c0c0891456284280c561
title: Long-term adult and juvenile periwinkle snail (Littoraria irrorate) density in mid-marsh and creekbank plots from the Georgia Coastal Ecosystems LTER Fall Monitoring Program

description: This data set includes long-term observation of the abundance of periwinkle snail (Littoraria irrorate) at sampling sites within the Georgia Coastal Ecosystem (GCE) LTER study area. Visual counts of adult Littoraria were conducted within 0.5m x 0.5m quadrats in-line with permanent GCE vegetation plots. Juvenile Littoraria (1-4mm shell length) were found and counted by looking inside all leaf furls within a nested quadrat (0.25m x 0.25m). In each marsh zone at each GCE LTER permanent monitoring site, we counted the number of adult and juvenile snails in 8 creekbank and 12 mid-marsh replicate quadrats. This method was started in 2012 as a new part of the annual GCE monitoring and supplements the invertebrate data that has been collected since October 2000. This data set includes observations from 2012 to 2021 and will be updated annually to include the prior year observations.
DOI: 10.6073/pasta/7a4a05d7e4f0d709b72c8d637da3c1c2
title: Long-term Plant Biomass Monitoring Data from Altamaha River Plant Transition Sites near the Georgia Coastal Ecosystems LTER Project on Sapelo Island, Georgia

description: The Georgia Coastal Ecosystems LTER program (GCE) monitors plant biomass annually to measure the species and size distribution of plants at 3 sampling sites on the creekbank of the Altamaha River. The sites were chosen to capture the transition from Spartina alterniflora to Spartina cynosuroides (site SCSA) and the transition from Spartina cynosuroides to Zizaniopsis miliacea (sites ZSC1 and ZSC2). The quadrats were established as permanent plots in October 2012 by placing PVC stakes along the creekbank at each site. Plots were evenly spaced, but were not randomly located because the goal was to start with mixtures of vegetation in most of the plots, and vegetation was distributed in patches along the creekbanks. Therefore, these plots provide useful measures of vegetation change, but are not a random sample of the vegetation at the site. Plots will be replaced each year as necessary to replace any lost to disturbance. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in a separate data set (PLT-GCEM-1801c). This data set includes cumulative long-term observations of plant stem count, height and biomass per plot and species at 3 Altamaha River transition sites from 2012 to 2021, and will be updated annually to include the prior year observations.
DOI: 10.6073/pasta/840a3f2dfc484c1e761bb26d3bbda7d5
title: Long-term soil salinity and organic content from the Georgia Coastal Ecosystems LTER Project on Sapelo Island, Georgia

description: Soil samples were collected in conjunction with annual plant monitoring at half of the permanent vegetation monitoring plots in the creekbank and midmarsh zones at 10 GCE study sites beginning in 2009. Pore-water salinity was determined by analysis of supernatant salinity in dried soil samples hydrated with a measured volume of deionized water. Organic content was measured gravimetrically by comparing ash-free dry weight and total weight of soil samples.
DOI: 10.6073/pasta/1162e5a704945e2bbcb6e9041b3ffe62
title: Yearly survey of barnacle settlement near creekbank plots at GCE LTER study sites in October 2021

description: To characterize spatial variation in barnacle recruitment at the creekbank, and across a gradient in salinity and distance to ocean, we deployed PVC poles to passive sample barnacle settlement. Eight poles were deployed between 4-5m apart adjacent to the creekbank vegetation monitoring plots at each GCE LTER permanent monitoring site each Fall beginning in 2012. These poles were then collected the following Fall and all barnacle that settled on the poles were identified and counted on 50cm-long sections of the 8, 3/4" diameter PVC poles. Four species settled on poles and were counted and recorded: Chthamalus fragilis, Balanus spp., Geukensia demissa, and Oysters (Crassostrea virginica).
DOI: 10.6084/m9.figshare.22354786
title: R_Reduced Master Egg Check.csv

description: data set containing observations when eggs were collected only
DOI: 10.6084/m9.figshare.22354786.v1
title: R_Reduced Master Egg Check.csv

description: data set containing observations when eggs were collected only
DOI: 10.26093/cds/vizier.36669015
title: Non-metastable ammonia masers in Sgr B2

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'Discovery of non-metastable ammonia masers in Sagittarius B2.' (bibcode: 2022A&A...666L..15Y)
DOI: 10.26093/cds/vizier.36670136
title: Methanol deuteration in high-mass protostars

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'Methanol deuteration in high-mass protostars.' (bibcode: 2022A&A...667A.136V)
DOI: 10.6084/m9.figshare.22354771
title: R_hatch success.csv

description: data set containing the hatch success of fertilized eggs
DOI: 10.6084/m9.figshare.22354771.v1
title: R_hatch success.csv

description: data set containing the hatch success of fertilized eggs
DOI: 10.21227/bsa9-sn19
title: AVDOS-VR: Affective Video Database for VR using subjective ratings and physiological data recorded with wearable EmteqPro system

description: Physiological database including 7 pairs of facial surface EMG (left/right frontalis, left/right zygomaticus, left/right orbicularis and centre corrugator) muscles, forehead PPG, IMU (Accelerometer, Gyroscope, Magnetometer)  and continuous self-ratings of arousal and valence while watching video stimuli. 37 participants watched an average of 23 minutes worth of videos. This included blocks of positive, negative and neutral segments. Each segment included 10 videos, 30 seconds long each. Relaxation video was played between each segment. Order of segments and videos within each segment was random.
DOI: 10.26093/cds/vizier.51640216
title: Photometric and spectroscopic study of Algol EW Bootis

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'A Photometric and Spectroscopic Study of the Short-period Algol EW Bootis with a {delta} Sct Pulsator' (bibcode: 2022AJ....164..216K)
DOI: 10.26093/cds/vizier.51640222
title: SDSS and WISE photometry of 115 starburst galaxies

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'The Space Density of Intermediate-redshift, Extremely Compact, Massive Starburst Galaxies.' (bibcode: 2022AJ....164..222W)
DOI: 10.26093/cds/vizier.51640228
title: Visual Orbits of Binaries with CHARA Array. IV.

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Visual Orbits of Spectroscopic Binaries with the CHARA Array. IV. HD61859, HD89822, HD109510, and HD191692.' (bibcode: 2022AJ....164..228L)
DOI: 10.26093/cds/vizier.51640239
title: IR light curve of VHS1256-1257b in 2018 & 2020 epochs

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Roaring Storms in the Planetary-mass Companion VHS 1256-1257 b: Hubble Space Telescope Multiepoch Monitoring Reveals Vigorous Evolution in an Ultracool Atmosphere.' (bibcode: 2022AJ....164..239Z)
DOI: 10.26093/cds/vizier.51640243
title: 3000-10700{AA} spectral cover of NGC 6153 with VLT

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'NGC 6153: Reality is Complicated.' (bibcode: 2022AJ....164..243R)
DOI: 10.6084/m9.figshare.22354774
title: R_Master_Egg_Check.csv

description: data set with all observations of each fish
DOI: 10.6084/m9.figshare.22354774.v1
title: R_Master_Egg_Check.csv

description: data set with all observations of each fish
DOI: 10.26093/cds/vizier.19180027
title: VLT/UVES spectrosc. in Orion. II. HH204

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Photoionized Herbig-Haro objects in the Orion Nebula through deep high spectral resolution spectroscopy. II. HH 204.' (bibcode: 2021ApJ...918...27M)