cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30916790.v1
title: İMEPAK-MİAK Kod Tablosu

description: This dataset/table was developed as part of the study titled <b>"Disciplinary Divergences in Interior Architecture and Architecture: A Comparative Analysis of İMEPAK–MİAK Undergraduate Accreditation Criteria."</b>
DOI: 10.4231/r78s4n47
title: Fragments of Fineware from the Rough Cilicia Survey Pottery Study Collection

description: &lt;p&gt;The Rough Cilicia Survey Pottery Study Collection consisting of more than 300 useful diagnostic sherds of the most commonly observed forms of the region, based on the collections of the survey team that took place between 1996-2011. The collection is a result of a non-intrusive walking  survey of that provided a highly accurate chronological assessment of the pottery recovered from a systematically organized and narrowly delineated set of spatial locations.&lt;/p&gt;
description: This dataset is contains images and descriptions of fineware form the Rough Cilicia Survey Pottery Study Collection, a collection of more than 300 useful diagnostic sherds of the most commonly observed forms of the region.
DOI: 10.4231/r74b2zhd
title: Positions of predicted CTCF binding sites and unique A and B-repeats in the build hg19 of the Human Genome

description: &lt;p&gt;In placental mammals, a group of genes is imprinted to impart parent-of-origin-specific expression.  The human chromosomal band 11p15.5 encompasses an imprinted domain (&lt;em&gt;H19 - IGF2&lt;/em&gt;) regulated by an Imprinting Control Region (ICR) at about 2 kb upstream of the &lt;em&gt;H19&lt;/em&gt; transcription start site (TSS).  This publication offers a file that lists genomic positions of reported A and B-repeat, and predicted CTCF binding sites, located upstream of the &lt;em&gt;H19&lt;/em&gt; TSS.  The file (Rpt_and_CTCF_positions_H19_ICR_hg19.bed) facilitates viewing listed positions with respect to landmarks displayed on the UCSC genome browser for the build hg19 of the human genome.  These landmarks include the position of genes, CpG islands, and the ENCODE data dealing with results of ChIP assays of histone marks and chromatin binding proteins including the transcription factor CTCF and two of the cohesin subunits (RAD21 and SMC3) known the contribute to the formation of chromatin boundaries.&lt;/p&gt;

&lt;p&gt;You can obtain a copy of the bed file (in text format) by clicking on download, at the top right-side of this page.  Alternatively, click on (&lt;a href="http://genome.ucsc.edu/cgi-bin/hgTracks?org=human&amp;db=hg19&amp;position=chr11:2,016,001-2,026,000 &amp;hgt.customText=https://purr.purdue.edu/publications/2900/serve?v=1" target="_blank"&gt;open repeat position and CTCF sites&lt;/a&gt;) to view the listing directly at the UCSC genome browser.  If you use the data in your research please cite the article entitled &ldquo;Positions of predicted CTCF binding sites and unique A and B-repeats in the build hg19 of the Human Genome,&rdquo; by Bina, M. (2019) bioRxiv &lt;a href="http://doi.org/10.1101/250407"&gt;doi: 10.1101/250407&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;If you observe anomalies on this page, please contact &lt;a href="mailto:bina@purdue.edu"&gt;bina@purdue.edu&lt;/a&gt;.&lt;/p&gt;
description: Supplementary materials for a publication entitled “Assessment of the CTCF Binding Sites and Repeat-Positions Upstream the Human H19 Gene“ Bina, M. January 2018, bioRxiv doi: 10.1101/250407
DOI: 10.15468/dl.awcynk
title: Occurrence Download

description: A dataset containing 208048 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Filipendula vulgaris",
 "HasCoordinate is true"
 ]
}

 The dataset includes 208048 records from 1071 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059385-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4231/r7kp80bb
title: 32-digit values of the first 100 recurrence coefficients for the lower symmetric subrange Binet weight function on [-c,c], c=1

description: &lt;p&gt;32-digit values of the first 100 recurrence coefficients for orthogonal polynomials relative to the weight function w(x)=-log(1-exp(-|x|)) on [-c,c], c=1, are computed by a moment-based method using the routine sr_lssrbinet(dig,32,100,1), where dig=468 has been determined by the routine dig_lssrbinet(100,1,460,4,32). The software provided in this dataset allows generating an arbitrary number N of recurrence coefficients for arbitrary c, 0 &lt; c &lt; Inf, and for different precisions.&lt;/p&gt;
description: 32-digit values of the first 100 recurrence coefficients for the weight function w(x)=-log(1-exp(-|x|)) on [-c,c], c=1
DOI: 10.4231/r7qf8r2p
title: 32-digit values of the first 100 recurrence coefficients for the lower subrange Binet weight function on [0,c], c=1

description: &lt;p&gt;32-digit values of the first 100 recurrence coefficients for orthogonal polynomials relative to the weight function w(x)=-log(1-exp(-x)) on [0,c], c=1, are computed by a moment-based method using the routine sr_lsrbinet(dig,32,100,1), where dig=528 has been determined by the routine dig_lsrbinet(100,1,520,4,32). The software provided in this dataset allows generating an arbitrary number N of recurrence coefficients for arbitrary c, 0 &lt; c &lt; Inf, and for different precisions.&lt;/p&gt;
description: 32-digit values of the first 100 recurrence coefficients for the weight function w(x)=-log(1-exp(-x)) on [0,c], c=1
DOI: 10.4231/r7zp44bw
title: Database of images for low complexity sign detection and text localization method for mobile applications

description: &lt;p&gt;This database contains images that were used for training and testing of our text detection and localization algorithm presented in &ldquo;A Low Complexity Sign Detection and Text Localization Method For Mobile Applications.&rdquo; The contents of this database are as follows:&lt;/p&gt;

&lt;ul&gt;
 &lt;li&gt;signs-N800-training: This directory contains 81 images of road signs, flyers, and posters. These images (size: 480 by 640) were all taken using a VGA camera on a Nokia N800. These images were used for training our algorithm&rsquo;s thresholds.&lt;/li&gt;
 &lt;li&gt;signs-N800-training: This directory contains 81 images of road signs, flyers, and posters. These images (size: 480 by 640) were all taken using a VGA camera on a Nokia N800. These images were used for training our algorithm&rsquo;s thresholds.&lt;/li&gt;
 &lt;li&gt;signs-N800-testing: This directory contains 160 images of road signs, flyers, and posters. These images (size: 480 by 640) were all taken using a VGA camera on a Nokia N800. These images were used for testing our algorithm&rsquo;s performance.&lt;/li&gt;
 &lt;li&gt;signs-N800-GT1: This directory contains 241 images of ground truth files used to objectively measure the number of false positives and false negatives found in each output image. In this set of ground truth images, each character in the targeted sign region was manually segmented from the rest of the image. The most prominent sign region in the image was manually chosen as the targeted sign region. Each character is a single connected component region separated from any other character&rsquo;s connected component region.&lt;/li&gt;
 &lt;li&gt;signs-N800-GT2: This directory contains 241 images of ground truth files used to objectively measure the number of false positives and false negatives found in each output image. In this set of ground truth images, each sign region was manually segmented from the rest of the image. All sign regions have been identified, not just the targeted sign region.&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;The paper goes into more detail about how we use these files to train and test our algorithm&rsquo;s performance. K. L. Bouman, G. Abdollahian, M. Boutin and E. J. Delp, &quot;A Low Complexity Sign Detection and Text Localization Method for Mobile Applications,&quot; in IEEE Transactions on Multimedia, vol. 13, no. 5, pp. 922-934, Oct. 2011. doi: 10.1109/TMM.2011.2154317&lt;/p&gt;
description: This database contains images that were used for training and testing of our text detection and localization algorithm.
DOI: 10.4231/r71834qx
title: Fragments of Cookware from the Rough Cilicia Survey Pottery Study Collection

description: &lt;p&gt;The Rough Cilicia Survey Pottery Study Collection consisting of more than 300 useful diagnostic sherds of the most commonly observed forms of the region, based on the collections of the survey team that took place between 1996-2011. The collection is a result of a non-intrusive walking  survey of that provided a highly accurate chronological assessment of the pottery recovered from a systematically organized and narrowly delineated set of spatial locations.&lt;/p&gt;
description: This dataset is contains images and descriptions of cookware form the Rough Cilicia Survey Pottery Study Collection, a collection of more than 300 useful diagnostic sherds of the most commonly observed forms of the region.
DOI: 10.4231/r7p26wb2
title: Fragments of Commonware from the Rough Cilicia Survey Pottery Study Collection

description: &lt;p&gt;The Rough Cilicia Survey Pottery Study Collection consisting of more than 300 useful diagnostic sherds of the most commonly observed forms of the region, based on the collections of the survey team that took place between 1996-2011. The collection is a result of a non-intrusive walking  survey of that provided a highly accurate chronological assessment of the pottery recovered from a systematically organized and narrowly delineated set of spatial locations.&lt;/p&gt;
description: This dataset is contains images and descriptions of commonware form the Rough Cilicia Survey Pottery Study Collection, a collection of more than 300 useful diagnostic sherds of the most commonly observed forms of the region.
DOI: 10.4231/r7p55kpg
title: 2017 State Street Reconstruction Time-Lapse

description: &lt;p&gt;[[Video(http://www.youtube.com/watch?v=RAgzgyiwg88)]]&lt;/p&gt;

&lt;p&gt;Construction for the State Street Redevelopment Project started in June of 2016. Construction is anticipated to be completed by the end of 2018. The nearly $123 million collaborative project between the City of West Lafayette and Purdue University features redesigned turn and travel lanes, dedicated bike lanes, new lighting, pedestrian safety enhancements, new sidewalks, new bus stops, and two-way traffic on State Street and many of the surrounding streets.&lt;/p&gt;
description: This video documents the demolition and reconstruction of State Street through the heart of Purdue University Campus in 2017.
DOI: 10.4231/r7dn4388
title: Wilmeth Active Learning Center 3-Year Construction Time-Lapse Captured From Purdue’s Mathematical Sciences Building

description: &lt;p&gt;[[Video(http://www.youtube.com/watch?v=AVxyFgd6v8A)]]&lt;/p&gt;

&lt;p&gt;Purdue University&rsquo;s Thomas S. and Harvey D. Wilmeth Active Learning Center was officially opened on August 7, 2017. The 164,000 SF, $79M design-bid-build project has 26 active learning classrooms and a central library that consolidates 6 campus libraries. The facility is located in the heart of campus with an atrium and reading room that overlooks the Bell Tower.&lt;/p&gt;

&lt;p&gt;This video was assembled from camera located on the MATH building for the three-year period of August, 2014, to August, 2017.&lt;/p&gt;
description: This video documents the demolition of Purdue’s Engineering Administration building (ENAD) and the old Heat and Power Plant North (HPN) building, and the construction of the new Wilmeth Active Learning Center.
DOI: 10.4231/r79021z5
title: Wilmeth Active Learning Center 3-Year Construction Time-Lapse Captured From Purdue’s A. A. Potter Engineering Center

description: &lt;p&gt;[[Video(http://www.youtube.com/watch?v=BSM-s7MphHw)]]&lt;/p&gt;

&lt;p&gt;Purdue University&rsquo;s Thomas S. and Harvey D. Wilmeth Active Learning Center was officially opened on August 7, 2017. The 164,000 SF, $79M design-bid-build project has 26 active learning classrooms and a central library that consolidates 6 campus libraries. The facility is located in the heart of campus with an atrium and reading room that overlooks the Bell Tower.&lt;/p&gt;

&lt;p&gt;This video was assembled from camera located on the MATH and POTR buildings for the three-year period of August, 2014, to August, 2017.&lt;/p&gt;
description: This video documents the demolition of Purdue’s Engineering Administration building (ENAD) and the old Heat and Power Plant North (HPN) building, and the construction of the new Wilmeth Active Learning Center.
DOI: 10.4231/r7cr5rjt
title: Pore-scale statistics of flow and transport through porous media

description: &lt;p&gt;Simulation data for pore-scale statistics of flow and transport through porous media. The data represent Eulerian velocity field for three types of porous media namely monodisperse hard-sphere, polydisperse hard-sphere, and overlapping spheres all at porosity 0.36. Data gives U,V,W, and X,Y,Z at which velocity is stored. Data also includes a phase indicator for each X,Y,Z where the value 1 means solid phase and value 0 means pore space.&lt;/p&gt;
description: Simulation data for pore-scale statistics of flow and transport through porous media
DOI: 10.4231/r7h993df
title: Videos Documenting Fragments from the Rough Cilicia Survey Pottery Study Collection

description: &lt;p&gt;This dataset contains videos furnishing visual presentations of some of the stored fragments of the Rough Cilicia Survey Project Ceramics Study Collection, a collection of more than 300 useful diagnostic sherds of the most commonly observed forms of the region. The collection was arranged on the floor in the Ceramics laboratory so that team members could examine them individually and learn to identify the various forms in the field. The video was shot in 1999 by Matthew Dillon.&lt;/p&gt;

&lt;ul&gt;
 &lt;li&gt;Introduction: studycoll.mov&lt;/li&gt;
 &lt;li&gt;Classical and Hellenistic Greek Fineware: hellfine.mov&lt;/li&gt;
 &lt;li&gt;Roman Fineware: erfine.mov&lt;/li&gt;
 &lt;li&gt;Imported Transport Amphoras: foramphs.mov&lt;/li&gt;
 &lt;li&gt;Local Amphora Production: zemers.mov&lt;/li&gt;
 &lt;li&gt;Local Coarseware Production: coarsewre.mov&lt;/li&gt;
&lt;/ul&gt;
description: This dataset contains videos of visual presentations of some of the stored fragments of the Rough Cilicia Survey Project Ceramics Study Collection, a collection of more than 300 useful diagnostic sherds of the most commonly observed forms of the...
DOI: 10.4231/r7k35rv5
title: 20 Commercial Foods to Test 3-step Phenylalanine Estimation Process

description: &lt;p&gt;Three files are included. The declaration file contains the assumptions that were made. The ingredient list contains all ingredients listed in decreasing order of weight and their Phe:protein ratios. The reference files lists all sources of data.&lt;/p&gt;

&lt;p&gt;Phenylalanine (Phe) is a key nutrient in the dietary management of the metabolic disease phenylketonuria (PKU). To give more freedom to PKU patients, we propose a numerical process to estimate the Phe content of a commercial food using the information printed on the label (Nutritional Fact Label and ordered ingredient list). The process is amenable to implementation as a smart phone/Web app and could be integrated into a personalized dietary management software. Our tests show that the results are very accurate (&plusmn;13 mg per serving) in the vast majority of foods considered. Our approach can be modified to handle any other amino acid for the management of other inborn errors of metabolism. A similar approach can also be used for improving the precision (i.e., increasing the quantization resolution) of the nutrients already listed (e.g., protein).&lt;/p&gt;

&lt;p&gt;J. Kim, A. Talikoti and M. Boutin, &quot;A 3-Step Process to Estimate Phenylalanine in Commercial Foods for PKU Management,&quot; in &lt;em&gt;IEEE Access&lt;/em&gt;, vol. 6, pp. 30758-30765, 2018.&lt;br /&gt;
doi: 10.1109/ACCESS.2018.2839079&lt;/p&gt;

&lt;p&gt; &lt;/p&gt;
description: This publication contains the ingredient list and phe:protein ratios for 20 commercial foods, along with assumptions made to test a proposed mathematical process to estimate phenylalanine in commercial foods.
DOI: 10.4231/r7mw2fbt
title: The influence of landscape and environmental factors on ranavirus epidemiology in a California amphibian assemblage

description: &lt;p&gt;1. A fundamental goal of disease ecology is to determine the landscape and environmental&lt;br /&gt;
processes that drive disease dynamics at different biological levels to&lt;br /&gt;
guide management and conservation. Although ranaviruses (family Iridoviridae)&lt;br /&gt;
are emerging amphibian pathogens, few studies have conducted comprehensive&lt;br /&gt;
field surveys to assess potential drivers of ranavirus disease dynamics.&lt;/p&gt;

&lt;p&gt;2. We examined the factors underlying patterns in site-level ranavirus presence and&lt;br /&gt;
individual-level ranavirus infection in 76 ponds and 1,088 individuals representing&lt;br /&gt;
five amphibian species within the East Bay region of California.&lt;/p&gt;

&lt;p&gt;3. Based on a competing-model approach followed by variance partitioning, landscape&lt;br /&gt;
and biotic variables explained the most variation in site-level presence. However, biotic&lt;br /&gt;
and individual-level variables explained the most variation in individual-level infection.&lt;/p&gt;

&lt;p&gt;4. Distance to nearest ranavirus-infected pond (the landscape factor) was more important&lt;br /&gt;
than biotic factors at the site level; however, biotic factors were most influential&lt;br /&gt;
at the individual level. At the site level, the probability of ranavirus presence&lt;br /&gt;
correlated negatively with distance to nearest ranavirus-positive pond, suggesting&lt;br /&gt;
that the movement of water or mobile taxa (e.g., adult amphibians, birds, reptiles)&lt;br /&gt;
may facilitate the movement of ranavirus between ponds and across the landscape.&lt;/p&gt;

&lt;p&gt;5. Taxonomic richness associated positively with ranavirus presence at the site&lt;br /&gt;
level, but vertebrate richness associated negatively with infection prevalence in&lt;br /&gt;
the host population. This might reflect the contrasting influences of diversity on&lt;br /&gt;
pathogen colonisation versus transmission among hosts.&lt;/p&gt;

&lt;p&gt;6. Amphibian host species differed in their likelihood of ranavirus infection: American&lt;br /&gt;
bullfrogs (Rana catesbeiana) had the weakest association with infection while roughskinned&lt;br /&gt;
newts (Taricha granulosa) had the strongest. After accounting for host species&lt;br /&gt;
effects, hostswith greater snout&ndash;vent length had a lower probability of infection.&lt;/p&gt;

&lt;p&gt;7. Our study demonstrates the array of landscape, environmental, and individual level&lt;br /&gt;
factors associated with ranavirus epidemiology. Moreover, our study helps&lt;br /&gt;
illustrate that the importance of these factors varies with biological level.&lt;/p&gt;
description: These data correspond to a paper entitled "The influence of landscape and environmental factors on ranavirus epidemiology in a California amphibian assemblage" by Tornabene et al. published in Freshwater Biology.
DOI: 10.4231/r71z42m1
title: EndNote Library to accompany Puberty in the last 25 years: A retrospective biliometric analysis

description: &lt;p&gt;EndNote Library to accompany Puberty in the last 25 years: A retrospective biliometric analysis&lt;/p&gt;
description: This compressed EndNote library contains the PubMed citations and abstracts that were hand-coded for the Publication Type section of the paper.
DOI: 10.4231/r7q81b9g
title: Next Generation Calmodulin Affinity Purification Data

description: &lt;p&gt;Coomassie-stained gels used for a semi-quantitative analysis of purified calcineurin from novel calmodulin Sepharose resins. The gel images depict the alpha and beta subunits of calcinuerin (at 60kDa and 19kDa, respectively) in 3 peak elution fractions from two types of CaM affinity resins, as well as BSA and Lysozyme (66kDa and 14kDa, respectively) at varying concentrations (mg/mL) that were used to create a standard curve for calculating the amount of total protein obtained in each purification.&lt;/p&gt;
description: Coomassie-stained gels used in semi-quantitative analysis of purified calcineurin from calmodulin Sepharose resins.
DOI: 10.4231/r7b856bc
title: Data from: Distantly related crops are not better rotation partners for tomato

description: &lt;ol&gt;
 &lt;li value="NaN"&gt;Although crop rotation has been used for centuries to enhance agricultural production, there are surprisingly little data justifying the use of one rotation over another. Growers typically avoid growing plants in succession that belong to the same genus or family, but it is not clear whether closely related crops are indeed poor rotation partners and whether evolutionary history, overall, predicts legacy effects in agricultural soils.&lt;/li&gt;
 &lt;li value="NaN"&gt;Here, we use a plant-soil feedback framework to test the relationship between species relatedness and crop growth. Using tomato &lt;em&gt;Solanum lycopersicum&lt;/em&gt; as our focal crop, we determined how 36 common crop and weed species that vary along a spectrum of phylogenetic relatedness influence tomato growth in subsequent plantings. We also tested whether soil conditioning affects the performance of an aboveground insect herbivore, the tobacco hornworm &lt;em&gt;Manduca sexta&lt;/em&gt;.&lt;/li&gt;
 &lt;li value="NaN"&gt;Phylogenetic relatedness did not predict plant-soil feedback effects on tomato biomass or hornworm performance; rather, impacts of soil conditioning were highly species- or family-specific. For example, tomatoes growing in soil previously containing plants in the Asteraceae family were notably resistant to caterpillar feeding.&lt;/li&gt;
 &lt;li value="NaN"&gt;There was also a disconnect between which plant species caused negative feedbacks on tomatoes vs. hornworms (e.g., thistle &lt;em&gt;Cirsium discolor&lt;/em&gt; soil had strong negative effects on herbivory but no impact on plant growth). Hence, negative feedbacks on hornworms are likely due to enhanced defence instead of simply reducing leaf availability.&lt;/li&gt;
 &lt;li value="NaN"&gt;&lt;em&gt;Synthesis and applications:&lt;/em&gt; These data demonstrate that, despite being widely recommended by agronomists in most cropping systems, phylogenetic relatedness is a poor predictor for the success of crop pairings in rotation, especially in tomato. Better understanding of species-specific effects of soil conditioning will lend insight into how polycultures can be better designed to optimize crop growth while reducing susceptibility to insect pests, which is particularly useful on diversified farms that cultivate a variety of crop species.&lt;/li&gt;
&lt;/ol&gt;
description: Data includes results from a greenhouse study that determined the effect of soil conditioning by 36 plant species on subsequent tomato growth. It also determined the effect on the tomato herbivore, the tobacco hornworm.