cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21233/7wd7-qd61
title: Crowlodge Creek ostracode surface sample dataset

description: Raw data for the Crowlodge Creek ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/3qcz-ja69
title: Blue Lake diatom dataset

description: Raw data for the Blue Lake diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/15cd-4x25
title: Trout River water chemistry dataset

description: Raw data for the Trout River water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/w6qm-tj72
title: Slieveanorra testate amoebae surface sample dataset

description: Raw data for the Slieveanorra testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/jt80-m966
title: Carnegie Trail Pond pollen dataset

description: Raw data for the Carnegie Trail Pond pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/13xb-df93
title: Bay of Quinte/Muscote Bay ostracode surface sample dataset

description: Raw data for the Bay of Quinte/Muscote Bay ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/10yw-vn62
title: B94-57 water chemistry dataset

description: Raw data for the B94-57 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/839d-jj85
title: LDDsite1318 water chemistry dataset

description: Raw data for the LDDsite1318 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/xmfe-0588
title: West Stump Lake ostracode surface sample dataset

description: Raw data for the West Stump Lake ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.5bh9ub
title: Occurrence Download

description: A dataset containing 3848 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Vincetoxicum rossicum (Kleopow) Barbar.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is Canada",
 "Year is one of (1900, 1901, 1902, 1903, 1904, 1905, 1906, 1907, 1908, 1909, 1910, 1911, 1912, 1913, 1914, 1915, 1916, 1917, 1918, 1919, 1920, 1921, 1922, 1923, 1924, 1925, 1926, 1927, 1928, 1929, 1930, 1931, 1932, 1933, 1934, 1935, 1936, 1937, 1938, 1939, 1940, 1941, 1942, 1943, 1944, 1945, 1946, 1947, 1948, 1949, 1950, 1951, 1952, 1953, 1954, 1955, 1956, 1957, 1958, 1959, 1960, 1961, 1962, 1963, 1964, 1965, 1966, 1967, 1968, 1969, 1970, 1971, 1972, 1973, 1974, 1975, 1976, 1977, 1978, 1979, 1980, 1981, 1982, 1983, 1984, 1985, 1986, 1987, 1988, 1989, 1990, 1991, 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2022, 2023, 2024)"
 ]
}

 The dataset includes 3848 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024343-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/ymg2-ge44
title: Herring Pond (E) water chemistry dataset

description: Raw data for the Herring Pond (E) water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15230761
title: A new theoretical framework for parameterizing nonequilibrium fractionation during evaporation from the ocean

description: This archive includes the surface flux model described in "A new theoretical framework for parameterizing nonequilibrium fractionation during evaporation from the ocean", submitted to J. Adv. Model. Earth Sy.

It also includes the subroutines for the new parameterization in iCAM6, output from the iCAM6 simulations, as well as Python scripts and notebooks for creating the figures.

Surface flux model

All code related to the surface flux model is in surface_flux_model.zip. The main script is called surface_flux_model.py. Parameters for the surface flux model can be adjusted in surface_flux_parameters.py. The plotting scripts are named plot_<something>.py.

iCAM6 simulations

The subroutines, iCAM6 output, and scripts for the analysis are in icam_simulations.zip. 

The subdirectory model/ contains the model output:



Monthly averages of H2OV, HDOV, and H218OV at the lowest model level from 2007-01-01 to 2020-12-31 are saved in nudged_clim_old_alphak.nc (default parameterization) and nudged_clim_new_alphak.nc (new parameterization). The file nudged_clim_new_alphak.nc additionally includes U10, PS, TREFHT, TS, LHFLX, SHFLX, QFLX_H2O.

Hourly averages of H2OV, HDOV, and H218OV at the lowest model level are saved separately for each ship campaign. The files are named nudged_<campaign>_old_alphak.nc (default parameterization) and nudged_<campaign>_new_alphak.nc (new parameterization). The files nudged_<campaign>_new_alphak.nc additionally include U10, PS, TREFHT, QFLX_H2O.


The subdirectory src/ contains the subroutines for the new parameterization in iCAM6.

The subdirectory scripts/ contains the notebook results.ipynb, which creates the figures for the iCAM6 simulations, and the necessary python modules. It assumes that the measurements from the ship campaigns are located in a subdirectory called measurements/ (see the references cited in the manuscript for access to the data). The functions for reading the measurements may need to be adapted depending on the format of the downloaded files.

Python environment

The Python scripts and notebooks run with Python version 3.10. Required packages are listed in the file environment.yml, which can be used to create a conda environment:

conda env create -f environment.yml
DOI: 10.21233/ca3c-xp14
title: LDDsite2522 water chemistry dataset

description: Raw data for the LDDsite2522 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/dv8x-9283
title: TenaTrail164 pollen surface sample dataset

description: Raw data for the TenaTrail164 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/4r64-5a20
title: Round Lake (Ot) diatom surface sample dataset

description: Raw data for the Round Lake (Ot) diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/19ck-ts82
title: Graben Dome, Diamond Craters vertebrate fauna dataset

description: Raw data for the Graben Dome, Diamond Craters vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/s305-kb49
title: LDDsite2677 water chemistry dataset

description: Raw data for the LDDsite2677 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/dhhc-1t28
title: Opunitia water chemistry dataset

description: Raw data for the Opunitia water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/n0nn-nc75
title: Bílé Karpaty 18 pollen surface sample dataset

description: Raw data for the Bílé Karpaty 18 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.fc327f
title: Occurrence Download

description: A dataset containing 233 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Juniperus rigida Siebold & Zucc."
 ]
}

 The dataset includes 233 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024344-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/h807-et22
title: Cottonwood Meadow Lake pollen surface sample dataset

description: Raw data for the Cottonwood Meadow Lake pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.3f3nr6
title: Occurrence Download

description: A dataset containing 255 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "Month is one of (April, May)",
 "TaxonKey is Prunus armeniaca L.",
 "Year 2006-2024"
 ]
}

 The dataset includes 255 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024345-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/9hbb-gf84
title: Catfish Lake diatom dataset

description: Raw data for the Catfish Lake diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/fez0-dh20
title: Aucilla River 2C] [8JE604] aka "Matten-Childers" vertebrate fauna dataset

description: Raw data for the Aucilla River 2C] [8JE604] aka "Matten-Childers" vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/p73p-fx25
title: Rice-Osceola Lead 210 dataset

description: Raw data for the Rice-Osceola Lead 210 dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/wv23-hv17
title: Lej Marsch testate amoebae surface sample dataset

description: Raw data for the Lej Marsch testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/tdp4-wx16
title: NMHL22 pollen surface sample dataset

description: Raw data for the NMHL22 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/pwfw-hk34
title: Lakkasuo testate amoebae surface sample dataset

description: Raw data for the Lakkasuo testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/wzvj-mv32
title: Lake 42 (Paterson et al. 2000) water chemistry dataset

description: Raw data for the Lake 42 (Paterson et al. 2000) water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/5ejd-0b67
title: Heron Reservoir diatom surface sample dataset

description: Raw data for the Heron Reservoir diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/enmq-kb54
title: Otter Pond pollen dataset

description: Raw data for the Otter Pond pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/hcrq-3x89
title: LDDsite3611 ostracode surface sample dataset

description: Raw data for the LDDsite3611 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/tjwc-xq40
title: Lake Joseph, Hamer Bay diatom dataset

description: Raw data for the Lake Joseph, Hamer Bay diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/xe2m-mn46
title: Foraker River insect dataset

description: Raw data for the Foraker River insect dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/rt3q-9z06
title: Snipe Lake diatom dataset

description: Raw data for the Snipe Lake diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.83e4ma
title: Occurrence Download

description: A dataset containing 1429 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Pinus tabuliformis Carrière"
 ]
}

 The dataset includes 1429 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024347-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/42ej-k952
title: Mukhrino testate amoebae surface sample dataset

description: Raw data for the Mukhrino testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/waqk-q019
title: Otter Creek ostracode surface sample dataset

description: Raw data for the Otter Creek ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/9b60-7673
title: Neversink Reservoir diatom surface sample dataset

description: Raw data for the Neversink Reservoir diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/aqkq-cs85
title: LDDsite3445 ostracode surface sample dataset

description: Raw data for the LDDsite3445 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/3p8d-eh46
title: Snyder Lake water chemistry dataset

description: Raw data for the Snyder Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/9q8w-0969
title: Free Peoples Lake pollen surface sample dataset

description: Raw data for the Free Peoples Lake pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/7an9-ny52
title: Lake Maudit pollen dataset

description: Raw data for the Lake Maudit pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/me4r-tx16
title: Semenic pollen dataset

description: Raw data for the Semenic pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/55zh-4e84
title: Clarabelle Lake diatom dataset

description: Raw data for the Clarabelle Lake diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/zjc7-zb54
title: Consultation L. diatom dataset

description: Raw data for the Consultation L. diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/766d-7973
title: LDDsite2346 water chemistry dataset

description: Raw data for the LDDsite2346 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.