cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24887036.v2
title: An expanded concept of <i>Ceratocystis manginecans</i> and five new species in the Latin American clade of <i>Ceratocystis</i>

description: The genus <i>Ceratocystis</i> contains a number of emerging plant pathogens, mostly members of the Latin American Clade (LAC), in which there are several unresolved taxonomic controversies. Among the most important are Brazilian pathogens in the <i>C. fimbriata</i> complex, <i>C. manginecans</i> and <i>C. eucalypticola</i>. Representatives of <i>C. manginecans</i> and <i>C. eucalypticola</i> from India and China, respectively, were shown to be fully interfertile in laboratory matings, and hybrids between the putative species were identified on <i>Punica</i> in India. An Indian tester strain was sexually compatible with representatives of what has been considered <i>C. fimbriata</i> on numerous hosts across Brazil. In this revision of the LAC, the name <i>C. fimbriata</i> is restricted to the widely dispersed <i>Ipomoea</i> strain, and <i>C. manginecans</i> is recognized as a Brazilian species that is important on <i>Mangifera, Eucalyptus</i>, and many other crops. <i>C. mangivora</i> and <i>C. mangicola</i> are also considered synonyms of <i>C. manginecans</i>. Based on phylogenetics and mating studies, two other Brazilian species are recognized: <i>C. atlantica</i>, sp. nov., and <i>C. alfenasii</i>, sp. nov., each with wide host ranges. Three new Caribbean species are recognized based on phylogenetics and earlier inoculation studies: <i>C. costaricensis</i>, sp. nov., on <i>Coffea, C. cubensis</i>, sp. nov., on <i>Spathodea</i>, and <i>C. xanthosomatis</i>, sp. nov., on the vegetatively propagated aroids <i>Xanthosoma</i> and <i>Syngonium</i>. Some of the other <i>Ceratocystis</i> species were based primarily on unique internal transcribed spacer (ITS) rDNA sequences, but the unreliability of rDNA sequences was demonstrated when intraspecific crossing of isolates with differing ITS sequences generated single-ascospore progeny with intragenomic variation in ITS sequences and others with new ITS sequences. Species recognition in <i>Ceratocystis</i> should use phenotype, including intersterility tests, to help identify which lineages are species. Although some species remain under-studied, we recognize 16 species in the LAC, all believed to be native to Latin America, the Caribbean region, or eastern USA.
DOI: 10.6084/m9.figshare.24681425
title: <i>Tasmaniomyxa umbilicata</i>, a new genus and new species of myxomycete from Tasmania

description: A new genus and species of myxomycete, <i>Tasmaniomyxa umbilicata</i>, is described based on numerous observations in Tasmania and additional records from southeastern Australia and New Zealand. The new taxon is characterized by an unusual combination of characters from two families: Lamprodermataceae and Didymiaceae. With Lamprodermataceae the species shares limeless sporocarps, a shining membranous peridium, an epihypothallic stalk, and a cylindrical columella. Like Didymiaceae, it has a soft, flaccid, sparsely branched capillitium, with rough tubular threads that contain fusiform nodes and are firmly connected to the peridium. Other characters of <i>T. umbilicata</i> that also occur in many Didymiaceae are the peridium dehiscing into petaloid lobes, the yellow, motile plasmodium, and the spores ornamented with larger, grouped and smaller, scattered warts. The transitional position of the new taxon is reflected by a three-gene phylogeny, which places <i>T. umbilicata</i> at the base of the branch of all lime-containing Physarales, thus justifying its description as a monotypic genus.
DOI: 10.6084/m9.figshare.24681425.v1
title: <i>Tasmaniomyxa umbilicata</i>, a new genus and new species of myxomycete from Tasmania

description: A new genus and species of myxomycete, <i>Tasmaniomyxa umbilicata</i>, is described based on numerous observations in Tasmania and additional records from southeastern Australia and New Zealand. The new taxon is characterized by an unusual combination of characters from two families: Lamprodermataceae and Didymiaceae. With Lamprodermataceae the species shares limeless sporocarps, a shining membranous peridium, an epihypothallic stalk, and a cylindrical columella. Like Didymiaceae, it has a soft, flaccid, sparsely branched capillitium, with rough tubular threads that contain fusiform nodes and are firmly connected to the peridium. Other characters of <i>T. umbilicata</i> that also occur in many Didymiaceae are the peridium dehiscing into petaloid lobes, the yellow, motile plasmodium, and the spores ornamented with larger, grouped and smaller, scattered warts. The transitional position of the new taxon is reflected by a three-gene phylogeny, which places <i>T. umbilicata</i> at the base of the branch of all lime-containing Physarales, thus justifying its description as a monotypic genus.
DOI: 10.6084/m9.figshare.24788304
title: <i>Fusarium</i> species associated with citrus blackfly (<i>Aleurocanthus woglumi</i>) from an agroecological polyculture in Brazil, including an augmented description of <i>F. volatile</i>

description: The objectives of this study were to report <i>Fusarium</i> species associated with <i>Aleurocanthus woglumi</i> (Hemiptera: Aleyrodidae) collected from citrus leaves from an agroecological polyculture in Brazil, assess sexual reproductive mode of the species with unknown sexual stages, and provide an augmented description of <i>F. volatile</i>, for which we discovered a sexual stage. Nineteen <i>Fusarium</i> isolates were recovered from <i>A. woglumi</i>. These fungi belong to three species complexes, i.e., the <i>F. chlamydosporum</i> species complex (FCSC), the <i>F. fujikuroi</i> species complex (FFSC), and the <i>F. incarnatum-equiseti</i> species complex (FIESC). Based on multilocus phylogenetic analyses, the species were identified as <i>F. annulatum, F. chlamydosporum, F. pernambucanum, F. sulawesiense, F. verticillioides</i>, and <i>F. volatile</i>. Our results suggest that three species whose sexual stages are unknown (<i>F. chlamydosporum, F. sulawesiense</i>, and <i>F. volatile</i>) are also heterothallic. Intraspecific crosses of <i>F. sulawesiense</i> and <i>F. volatile</i> produced protoperithecia, whereas 66.7% of <i>F. volatile</i> crosses produced fertile perithecia. We provide an augmented description of the latter species to include characteristics of its sexual morph and those observed in the asexual morph that had not yet been described for the species. This study highlights the potential of researching insect-associated fungi to increase knowledge about the diversity, taxonomy, and versatility of <i>Fusarium</i> in ecosystems.
DOI: 10.6084/m9.figshare.24788304.v1
title: <i>Fusarium</i> species associated with citrus blackfly (<i>Aleurocanthus woglumi</i>) from an agroecological polyculture in Brazil, including an augmented description of <i>F. volatile</i>

description: The objectives of this study were to report <i>Fusarium</i> species associated with <i>Aleurocanthus woglumi</i> (Hemiptera: Aleyrodidae) collected from citrus leaves from an agroecological polyculture in Brazil, assess sexual reproductive mode of the species with unknown sexual stages, and provide an augmented description of <i>F. volatile</i>, for which we discovered a sexual stage. Nineteen <i>Fusarium</i> isolates were recovered from <i>A. woglumi</i>. These fungi belong to three species complexes, i.e., the <i>F. chlamydosporum</i> species complex (FCSC), the <i>F. fujikuroi</i> species complex (FFSC), and the <i>F. incarnatum-equiseti</i> species complex (FIESC). Based on multilocus phylogenetic analyses, the species were identified as <i>F. annulatum, F. chlamydosporum, F. pernambucanum, F. sulawesiense, F. verticillioides</i>, and <i>F. volatile</i>. Our results suggest that three species whose sexual stages are unknown (<i>F. chlamydosporum, F. sulawesiense</i>, and <i>F. volatile</i>) are also heterothallic. Intraspecific crosses of <i>F. sulawesiense</i> and <i>F. volatile</i> produced protoperithecia, whereas 66.7% of <i>F. volatile</i> crosses produced fertile perithecia. We provide an augmented description of the latter species to include characteristics of its sexual morph and those observed in the asexual morph that had not yet been described for the species. This study highlights the potential of researching insect-associated fungi to increase knowledge about the diversity, taxonomy, and versatility of <i>Fusarium</i> in ecosystems.
DOI: 10.5281/zenodo.10535118
title: Ecological Network Resilience & Extinction Proxies - Updating Projections of Ecological Networks - Data Repository

description: Accompanying data for manuscript entitled "Ecological Network Resilience & Extinction Proxies - Updating Projections of Ecological Networks" whose submission is imminent.
DOI: 10.6084/m9.figshare.24887036.v1
title: An expanded concept of <i>Ceratocystis manginecans</i> and five new species in the Latin American Clade of <i>Ceratocystis</i>

description: The genus <i>Ceratocystis</i> contains a number of emerging plant pathogens, mostly members of the Latin American Clade (LAC), in which there are several unresolved taxonomic controversies. Among the most important are Brazilian pathogens in the <i>C. fimbriata</i> complex, <i>C. manginecans</i> and <i>C. eucalypticola</i>. Representatives of <i>C. manginecans</i> and <i>C. eucalypticola</i> from India and China, respectively, were shown to be fully interfertile in laboratory matings, and hybrids between the putative species were identified on <i>Punica</i> in India. An Indian tester strain was sexually compatible with representatives of what has been considered <i>C. fimbriata</i> on numerous hosts across Brazil. In this revision of the LAC, the name <i>C. fimbriata</i> is restricted to the widely dispersed <i>Ipomoea</i> strain, and <i>C. manginecans</i> is recognized as a Brazilian species that is important on <i>Mangifera, Eucalyptus</i>, and many other crops. <i>C. mangivora</i> and <i>C. mangicola</i> are also considered synonyms of <i>C. manginecans</i>. Based on phylogenetics and mating studies, two other Brazilian species are recognized: <i>C. atlantica</i>, sp. nov., and <i>C. alfenasii</i>, sp. nov., each with wide host ranges. Three new Caribbean species are recognized based on phylogenetics and earlier inoculation studies: <i>C. costaricensis</i>, sp. nov., on <i>Coffea, C. cubensis</i>, sp. nov., on <i>Spathodea</i>, and <i>C. xanthosomatis</i>, sp. nov., on the vegetatively propagated aroids <i>Xanthosoma</i> and <i>Syngonium</i>. Some of the other <i>Ceratocystis</i> species were based primarily on unique internal transcribed spacer (ITS) rDNA sequences, but the unreliability of rDNA sequences was demonstrated when intraspecific crossing of isolates with differing ITS sequences generated single-ascospore progeny with intragenomic variation in ITS sequences and others with new ITS sequences. Species recognition in <i>Ceratocystis</i> should use phenotype, including intersterility tests, to help identify which lineages are species. Although some species remain under-studied, we recognize 16 species in the LAC, all believed to be native to Latin America, the Caribbean region, or eastern USA.
DOI: 10.5519/qd.ivuwlj49
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (108 records)
DOI: 10.48577/jpl.8xnl5s
title: Workshop on Proposal Writing

description: Workshop on Proposal Writing
DOI: 10.5517/ccdc.csd.cc2ddfs1
title: CCDC 2216493: Experimental Crystal Structure Determination

description: Related Article: Gokul S. Londhe, Boopathy Gnanaprakasam|2023|Asian J.Org.Chem|12|e202300358|doi:10.1002/ajoc.202300358
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fzqqw
title: CCDC 2263859: Experimental Crystal Structure Determination

description: Related Article: G. Siva Sankaram, Tanmoy Sahoo, Myadari Madhu, B. Sridhar, B. V. Subba Reddy|2023|Asian J.Org.Chem|12|e202300395|doi:10.1002/ajoc.202300395
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g0bf8
title: CCDC 2264439: Experimental Crystal Structure Determination

description: Related Article: Kamal R. Chaudhari, Amey P. Wadawale, Arup Kumar Pathak, Sandip Dey|2024|Inorg.Chem.|63|1427|doi:10.1021/acs.inorgchem.3c03963
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g0bg9
title: CCDC 2264440: Experimental Crystal Structure Determination

description: Related Article: Kamal R. Chaudhari, Amey P. Wadawale, Arup Kumar Pathak, Sandip Dey|2024|Inorg.Chem.|63|1427|doi:10.1021/acs.inorgchem.3c03963
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g0bhb
title: CCDC 2264441: Experimental Crystal Structure Determination

description: Related Article: Kamal R. Chaudhari, Amey P. Wadawale, Arup Kumar Pathak, Sandip Dey|2024|Inorg.Chem.|63|1427|doi:10.1021/acs.inorgchem.3c03963
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g0bjc
title: CCDC 2264442: Experimental Crystal Structure Determination

description: Related Article: Kamal R. Chaudhari, Amey P. Wadawale, Arup Kumar Pathak, Sandip Dey|2024|Inorg.Chem.|63|1427|doi:10.1021/acs.inorgchem.3c03963
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g12d0
title: CCDC 2265151: Experimental Crystal Structure Determination

description: Related Article: G. Siva Sankaram, Tanmoy Sahoo, Myadari Madhu, B. Sridhar, B. V. Subba Reddy|2023|Asian J.Org.Chem|12|e202300395|doi:10.1002/ajoc.202300395
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.25027355
title: Redefining the pathways in the basilar pons, part 1. The descending fibre bundles.

description: Download: program-data package for DSI STUDIO (https://dsi-studio.labsolver.org/download.html) and for 3D slicer (https://download.slicer.org/).Method:Diffusion tractography was performed on human specimen One from Duke University using DSI Studio (http://dsi-studio.labsolver.org/). A high-angular resolution diffusion MR imaging (HARDI) scheme was used, and a total of 120 diffusion sampling directions were acquired. The b-value was 4000 s/mm<sup>2</sup>. The in-plane resolution and the slice thickness were both 0.2 mm. The diffusion tensor was calculated.Instructions:Download FAC, specimen 1 Duke / fractional anisotropy maps and run with 3D slicer for neuronavigation in transverse, sagittal, coronal planes.Download fib file (Reg_S64550_nii4d.nii.gz.src.gz.012fx.dti.fib) and Browse/open it with dsi studio. Double click on fib file to open. open yellow folder in the Region Window of dsi studio and upload nodif_brain_mask.nii.gz file to render the tracts with an anatomical background GRE.Download and open with yellow folder in Tract list in dsi studio 1) script for ventral descending bundles.gz, for the cervical, 2) script for intermediate descending bundles.gz, for the thoracic, 3) script for dorsal descending bundles.gz, for the lumbar/sacral pyramidal tract. Download 4) script for striatonigral-corticonigral pathway.gz, for the striatonigral/corticonigral pathways.Reference: Principles of organisation within the pathways in the brainstem and thalamus. UNSW 2022.https://doi.org/10.26190/unsworks/24097<br>
DOI: 10.6084/m9.figshare.25027355.v1
title: Redefining the pathways in the basilar pons, part 1. The descending fibre bundles.

description: Download: program-data package for DSI STUDIO (https://dsi-studio.labsolver.org/download.html) and for 3D slicer (https://download.slicer.org/).Method:Diffusion tractography was performed on human specimen One from Duke University using DSI Studio (http://dsi-studio.labsolver.org/). A high-angular resolution diffusion MR imaging (HARDI) scheme was used, and a total of 120 diffusion sampling directions were acquired. The b-value was 4000 s/mm<sup>2</sup>. The in-plane resolution and the slice thickness were both 0.2 mm. The diffusion tensor was calculated.Instructions:Download FAC, specimen 1 Duke / fractional anisotropy maps and run with 3D slicer for neuronavigation in transverse, sagittal, coronal planes.Download fib file (Reg_S64550_nii4d.nii.gz.src.gz.012fx.dti.fib) and Browse/open it with dsi studio. Double click on fib file to open. open yellow folder in the Region Window of dsi studio and upload nodif_brain_mask.nii.gz file to render the tracts with an anatomical background GRE.Download and open with yellow folder in Tract list in dsi studio 1) script for ventral descending bundles.gz, for the cervical, 2) script for intermediate descending bundles.gz, for the thoracic, 3) script for dorsal descending bundles.gz, for the lumbar/sacral pyramidal tract. Download 4) script for striatonigral-corticonigral pathway.gz, for the striatonigral/corticonigral pathways.Reference: Principles of organisation within the pathways in the brainstem and thalamus. UNSW 2022.https://doi.org/10.26190/unsworks/24097<br>
DOI: 10.5281/zenodo.10535167
title: Chr01 for vitis downsample
DOI: 10.5281/zenodo.10535168
title: Chr01 for vitis downsample
DOI: 10.5281/zenodo.10535247
title: Can Large Language Models Automatically Generate GIS Reports?

description: This package contains data supporting the paper titled "Can Large Language Models Automatically Generate GIS Reports?". The package includes three different GIS reporting scenarios and, for each scenario, the employed prompts and the reports generated using a LLM in each repetition of the experiment.
DOI: 10.5281/zenodo.10535248
title: Can Large Language Models Automatically Generate GIS Reports?

description: This package contains data supporting the paper titled "Can Large Language Models Automatically Generate GIS Reports?". The package includes three different GIS reporting scenarios and, for each scenario, the employed prompts and the reports generated using a LLM in each repetition of the experiment.
DOI: 10.5519/qd.a7bk6on6
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (47 records)
DOI: 10.5281/zenodo.10535324
title: Weight biases, body image and obesity risk knowledge  in groups of nursing students from Poland and Nigeria.
DOI: 10.5281/zenodo.10535325
title: Weight biases, body image and obesity risk knowledge  in groups of nursing students from Poland and Nigeria.
DOI: 10.5281/zenodo.10535195
title: Resultados de investigación sobre Cuantificación de metales en LECISAN® por espectrometría de emisión óptica con plasma acoplado inductivamente
title: Research results of Quantification of metals in LECISAN® by inductively coupled plasma optical emission spectrometry

description: Research results of Quantification of metals in LECISAN® by inductively coupled plasma optical emission spectrometry. This work aimed to quantify metals in the raw material used in the manufacture of the LECISAN® chewable tablet and in the tablet to establish reference levels of: Aluminum (Al), Calcium (Ca), Cadmium (Cd), Chromium (Cr), Copper (Cu), Iron (Fe), Magnesium (Mg), Lead (Pb), Silicon (Si), Vanadium (V) and Zinc (Zn). To carry out the experimental part of this work, materials and equipment from the Analytical Chemistry Laboratory, belonging to the Center for Industrial Biotechnology Studies (CEBI), of the Universidad de Oriente and the Laboratory of the Geominera Oriente Company, Santiago de Cuba, were used.
DOI: 10.5281/zenodo.10535196
title: Resultados de investigación sobre Cuantificación de metales en LECISAN® por espectrometría de emisión óptica con plasma acoplado inductivamente
title: Research results of Quantification of metals in LECISAN® by inductively coupled plasma optical emission spectrometry

description: Research results of Quantification of metals in LECISAN® by inductively coupled plasma optical emission spectrometry. This work aimed to quantify metals in the raw material used in the manufacture of the LECISAN® chewable tablet and in the tablet to establish reference levels of: Aluminum (Al), Calcium (Ca), Cadmium (Cd), Chromium (Cr), Copper (Cu), Iron (Fe), Magnesium (Mg), Lead (Pb), Silicon (Si), Vanadium (V) and Zinc (Zn). To carry out the experimental part of this work, materials and equipment from the Analytical Chemistry Laboratory, belonging to the Center for Industrial Biotechnology Studies (CEBI), of the Universidad de Oriente and the Laboratory of the Geominera Oriente Company, Santiago de Cuba, were used.
DOI: 10.17909/ndj7-4v42
title: Data from Fuda et al. 2024

description: We present the longest photometric monitoring of up to 1200 hours of the strongly variable brown-dwarf binaries Luhman 16 AB and provide evidence of $\pm5\%$ variability on a timescale of several-to-hundreds of hours for this object. We show that short-period rotational modulation around 5 hours ($k=1$ wavenumber) and 2.5 hours ($k=2$ wavenumber) dominate the variability under 10 hours, where the planetary-scale waves model composed of $k=1$ and $k=2$ waves provides good fits to both the periodogram and light curve. In particular, models consisting of three to four sine waves could explain the light curve variability for light curve duration up to 100 hours. We show that the relative range of $k=2$ periods is narrower compared to $k=1$ period. By using simple models of zonal banding in Solar System giants, we suggest that the difference in period range arises from the difference in windspeed distribution at low and mid-to-high latitudes in the atmosphere. Lastly, we show that Luhman 16 AB also exhibits long-period $\pm5\%$ variability with periods ranging from 15 hours up to 100 hours over the longest monitoring of this object. Our results on $k=1$ and $k=2$ waves and long-period evolution are consistent with previous 3D atmosphere simulations, demonstrating that both latitude-dependent waves and slow-varying atmospheric features are potentially present in Luhman 16 AB atmospheres and are significant contribution to the light curve modulation over hundreds of rotations.