cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.7szxnf
title: Occurrence Download

description: A dataset containing 17235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is ArtenFinder",
 "OccurrenceStatus is Present",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 17235 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019945-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/ydjcvxs62f
title: Environment, vegetation and soil factor data of different altitude gradients

description: Data on soil texture, community characteristics, and climate-related factors at different altitude gradients in arid areas.
DOI: 10.17632/ydjcvxs62f.1
title: Environment, vegetation and soil factor data of different altitude gradients

description: Data on soil texture, community characteristics, and climate-related factors at different altitude gradients in arid areas.
DOI: 10.15468/dl.mhjb6x
title: Occurrence Download

description: A dataset containing 1288603 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is NOAA Deep-Sea Coral Research and Technology Program"
 ]
}

 The dataset includes 1288603 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019915-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/thxf72xp3n.1
title: Enhanced flight performance in hoverfly migrants

description: Supplementary data from 'Enhanced flight performance in hoverfly migrants' by Richard Massy, Will Hawkes, Scarlett Weston, Toby Doyle and Karl R. Wotton 
Document S1. Details about flight mill design and statistics. Figures S1 – S5.
Data S2. Raw flight mill data, fly information (origin, sex, body condition and size) and morphometric information of a sample of flies. The folder also contains processed flight mill data. “RD All flights.csv” contains information per fly, pertaining to figures 2a, 3a-b and 4a. “RS Flight_stats.csv” contains information from individual flights and pertains to figure 2c. “RD Transects.csv” contains a time-transect of all flies, pertaining to figures 3c and 4b.
Code S3. Python scripts required to run flight mills and process the outputted data. Analysis scripts in R pertaining to figure 1 and figures 2-4.
DOI: 10.17632/thxf72xp3n.2
title: Enhanced flight performance in hoverfly migrants

description: Supplementary data from 'Enhanced flight performance in hoverfly migrants' by Richard Massy, Will Hawkes, Scarlett Weston, Toby Doyle and Karl R. Wotton 
Document S1. Details about flight mill design and statistics. Figures S1 – S5.
Data S2. Raw flight mill data, fly information (origin, sex, body condition and size) and morphometric information of a sample of flies. The folder also contains processed flight mill data. “RD All flights.csv” contains information per fly, pertaining to figures 2a, 3a-b and 4a. “RS Flight_stats.csv” contains information from individual flights and pertains to figure 2c. “RD Transects.csv” contains a time-transect of all flies, pertaining to figures 3c and 4b.
Code S3. Python scripts required to run flight mills and process the outputted data. Analysis scripts in R pertaining to figure 1 and figures 2-4.
DOI: 10.17632/6xj2jsffzb.1
title: Wave velocity models and relocated seismicity

description: 3D velocity models and relocated seismicty for the central DSF using the PyVoroTomo method of Fang et al., 2022, JGR
DOI: 10.15468/dl.faexua
title: Occurrence Download

description: A dataset containing 1854 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Elephas maximus Linnaeus, 1758",
 "Year 1990-2024"
 ]
}

 The dataset includes 1854 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019947-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z5wf98
title: Occurrence Download

description: A dataset containing 3569 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Carpobrotus edulis (L.) N.E.Br."
 ]
}

 The dataset includes 3569 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019948-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/4dt627h4f3.1
title: Beneficial effects of Glc-1,6-P2 modulation on mutant phosphomannomutase-2_Proteomics

description: Secretomes and total cell lysates deriving from -/-PMM1 and +/+PMM1 samples were compared by mass spectrometry-based quantitative proteomic through Stable Isotope Dimethyl Labeling. Two biological replicates were analysed for both secretomes and total cell lysates, with the latter being pre-fractionated in 14 fractions.
More in details, peptides were labeled as “light” and “heavy” when belonging to -/-PMM1 and +/+PMM1 samples, respectively. Thus, a heavy/light (H/L) ratio ˃ 1 indicates how much a peptide (and consequently, a protein) is scarce in the -/-PMM1 sample (light) in respect to the +/+PMM1 (heavy) one and vice versa. Bioinformatic analysis was performed through MaxQuant software to identify and quantify proteome alterations. Protein ratios higher than 1.5 and lower than 0.5 were considered reliable alterations of the proteome due to PMM1 knock-out, when existing in both biological replicates.
DOI: 10.17632/j65t6xdmmv.1
title: VIPAS39 related arthrogryposis-renal dysfunction-cholestasis syndrome - case report and systematic review

description: Additional data and materials used in the study.
DOI: 10.17632/89knymm2n2.1
title: miR-628-3p exerts a carcinogenic effect on hepatocellular carcinoma

description: Here, we evaluated the effect of miR-628-3p on HCC proliferation by in vitro proliferation assay and xenograft tumor model. Flow cytometry was used to monitor the cell cycle and apoptosis of HCC cells. Quantitative real-time polymerase chain reaction (qRT-PCR) and western blot (WB) were used to determine the expression of each gene.
DOI: 10.17632/89knymm2n2.2
title: miR-628-3p exerts a carcinogenic effect on hepatocellular carcinoma

description: Here, we evaluated the effect of miR-628-3p on HCC proliferation by in vitro proliferation assay and xenograft tumor model. Flow cytometry was used to monitor the cell cycle and apoptosis of HCC cells. Quantitative real-time polymerase chain reaction (qRT-PCR) and western blot (WB) were used to determine the expression of each gene.
DOI: 10.17632/whdgg3tfmt.1
title: Infection-induced vascular inflammation in COVID-19 links focal microglial dysfunction with neuropathologies through IL-1/IL-6-related systemic inflammatory states

description: COVID-19 is associated with diverse neurological abnormalities, which predict poor outcome in patients. However, the mechanisms whereby infection-induced inflammation could affect complex neuropathologies in COVID-19 are unclear. We hypothesized that microglia, the resident immune cells of brain, are centrally involved in this process. To study this, we developed an autopsy platform allowing the integration of molecular anatomy-, protein- and mRNA data sets in post-mortem mirror blocks of brain and peripheral organ samples from COVID-19 cases. Nanoscale microscopy, single-cell RNA sequencing and analysis of inflammatory and metabolic signatures revealed distinct mechanisms of microglial dysfunction associated with cerebral SARS-CoV-2 infection. We observed focal loss of microglial P2Y12R at sites of virus-associated vascular inflammation together with dysregulated microglia-vascular-astrocyte interactions, CX3CR1-CX3CL1 axis deficits and metabolic failure in severely affected medullary autonomic nuclei and other brain areas. Microglial dysfunction associated with mitochondrial injury and cell loss occurs at sites of excessive synapse- and myelin phagocytosis and loss of glutamatergic terminals in line with proteomic changes of synapse assembly, metabolism and neuronal injury. These changes parallel increased numbers of perivascular macrophages in the medulla. While central and systemic viral load is strongly linked in individual patients, the regionally heterogenous microglial reactivity in the brain correlated with the extent of central and systemic inflammation related to IL-1 / IL-6 via virus-sensing pattern recognition receptors (PRRs) and inflammasome activation pathways. Thus, SARS-CoV-2-induced central and systemic inflammation might lead to a primarily glio-vascular failure in the brain, which could be a common contributor to diverse COVID-19-related neuropathologies.
DOI: 10.17632/89knymm2n2.3
title: miR-628-3p exerts a carcinogenic effect on hepatocellular carcinoma

description: Here, we evaluated the effect of miR-628-3p on HCC proliferation by in vitro proliferation assay and xenograft tumor model. Flow cytometry was used to monitor the cell cycle and apoptosis of HCC cells. Quantitative real-time polymerase chain reaction (qRT-PCR) and western blot (WB) were used to determine the expression of each gene.
DOI: 10.17632/gk2h6wgf8p.1
title: UK export demand

description: Data used in the estimation of UK export demand. Some calculations have been preformed to derive some of the provided variables. Data are collected from: 
Organisation for Economic Co operation and Development (OECD) 
Federal Reserve Bank of St Louis
UK Office for National Statistics
International Financial Statistics
DOI: 10.17632/zhfx2g7s7b.1
title: Embankment Test Dam of Älvkarleby – Data from seepage and turbidity measurements.

description: The data originate from a project with a full-scale rock fill embankment dam constructed at the Vattenfall Research and Development facilities in Älvkarleby, Sweden. Design of the dam and intentionally installed defects are presented in Lagerlund @ al. (2022) [DOI:10.17632/k7zrrbxxnb.3]

Current data set contains seepage measurements from eight downstream weirs together with turbidity measurements in the reservoir and in each weir. An overview sketch (Sketch.jpg) presents the dam and the position and numbering of the different weirs. The textfile "Info about data" give details on how to interpret the attached data files.
DOI: 10.17632/zhfx2g7s7b.2
title: Embankment Test Dam of Älvkarleby – Data from seepage and turbidity measurements.

description: The data originate from a project with a full-scale rock fill embankment dam constructed at the Vattenfall Research and Development facilities in Älvkarleby, Sweden. Design of the dam and intentionally installed defects are presented in Lagerlund @ al. (2022) [DOI:10.17632/k7zrrbxxnb.3]

Current data set contains seepage measurements from eight downstream weirs together with turbidity measurements in the reservoir and in each weir. An overview sketch (Sketch.jpg) presents the dam and the position and numbering of the different weirs. The textfile "Info about data" give details on how to interpret the attached data files.
DOI: 10.17632/wgzmt67x8w.1
title: Numerical ability of rabbits data

description: Thirteen rabbits at The College of West Anglia, Cambridge were tested on their numerical abilities by the use of the spontaneous choice test. The first experiment explores if there is a difference between the number of times rabbits choose the larger quantity of food between 0 vs 1 pieces of carrot, 1 vs 2 pieces of carrot, 1 vs 3 pieces of carrot, 3 vs 4 pieces of carrot, 4 vs 7 pieces of carrot, and 6 vs 7 pieces of carrot. The second experiment asks if there is a difference between the number of times the rabbits choose the large food item vs the number of times that they choose the small food item. The third experiment tests if there is a difference between the number of times the rabbits choose the four large food items vs the number of times that they choose the 16 smaller food items when both options equate to equal overall amounts. 
The conditions were divided into two groups based on the ratio between the two quantities (the smaller number divided by the second number). The small ratio group with a ratio of ≤0.5 consisted of 0 vs 1 (0), 
1 vs 3 (0.33), and 1 vs 2 (0.5). The large ratio group with a ratio of &gt;0.5 consisted of 4 vs 7 (0.57), 3 vs 4 (0.75), and 6 vs 7 (0.86). 

Experiment 1:
• Condition 1: 0 v 1 pieces of carrot (4cm3) 
• Condition 2: 1 vs 2 pieces of carrot (all 4cm3) 
• Condition 3: 1 vs 3 pieces of carrot (all 4cm3) 
• Condition 4: 3 vs 4 pieces of carrot (all 4cm3) 
• Condition 5: 4 vs 7 pieces of carrot (all 4cm3) 
• Condition 6: 6 vs 7 pieces of carrot (all 4cm3) 
The experimenter cut up carrots into the quantities and volumes listed above. For each condition, they approached the first plate and dropped one of the quantities onto it sequentially from 4cm above the plate whilst the rabbit was watching. They then approached the second plate and dropped the remaining quantity of carrots from that condition onto it sequentially, from 4cm above the plate. The rabbit approached a plate and ate the contents, with the remaining plate being taken away. Each rabbit participated in every condition once, with one trial per rabbit per session, unless the rabbit appeared unmotivated or uninterested, then the trial was not included and was repeated during the next session when possible. This was repeated for all six conditions.

Experiment 2:
The same procedure outlined above was used, but with the two food choices being a whole 6cm3 baton carrot, and a 1.5cm3 (quarter) baton carrot. Therefore, one plate had a whole 6cm3 baton, and one plate had ¼ of that. Each rabbit participated in this two times, on two separate occasions

Experiment 3:
The same procedure as experiment 1 was used, but with the two food choices being four pieces of 4cm3 carrot, and 16 pieces of 1cm3 carrot, spending 10 seconds at each plate. Each rabbit participated in this two times, on two separate occasions.
DOI: 10.17632/zhfx2g7s7b.3
title: Embankment Test Dam of Älvkarleby – Data from seepage and turbidity measurements.

description: The data originate from a project with a full-scale rock fill embankment dam constructed at the Vattenfall Research and Development facilities in Älvkarleby, Sweden. Design of the dam and intentionally installed defects are presented in Lagerlund @ al. (2022) [DOI:10.17632/k7zrrbxxnb.3]

Current data set contains seepage measurements from eight downstream weirs together with turbidity measurements in the reservoir and in each weir. An overview sketch (Sketch.jpg) presents the dam and the position and numbering of the different weirs. The textfile "Info about data" give details on how to interpret the attached data files. 

Data set updated with addtional seepage and turbidity data until August 2024 when the dam was demolished.
DOI: 10.17632/wgzmt67x8w.2
title: Numerical ability of rabbits data

description: Thirteen rabbits at The College of West Anglia, Cambridge were tested on their numerical abilities by the use of the spontaneous choice test. The first experiment explores if there is a difference between the number of times rabbits choose the larger quantity of food between 0 vs 1 pieces of carrot, 1 vs 2 pieces of carrot, 1 vs 3 pieces of carrot, 3 vs 4 pieces of carrot, 4 vs 7 pieces of carrot, and 6 vs 7 pieces of carrot. The second experiment asks if there is a difference between the number of times the rabbits choose the large food item vs the number of times that they choose the small food item. The third experiment tests if there is a difference between the number of times the rabbits choose the four large food items vs the number of times that they choose the 16 smaller food items when both options equate to equal overall amounts. 
The conditions were divided into two groups based on the ratio between the two quantities (the smaller number divided by the second number). The small ratio group with a ratio of ≤0.5 consisted of 0 vs 1 (0), 
1 vs 3 (0.33), and 1 vs 2 (0.5). The large ratio group with a ratio of &gt;0.5 consisted of 4 vs 7 (0.57), 3 vs 4 (0.75), and 6 vs 7 (0.86). 

Experiment 1:
• Condition 1: 0 v 1 pieces of carrot (4cm3) 
• Condition 2: 1 vs 2 pieces of carrot (all 4cm3) 
• Condition 3: 1 vs 3 pieces of carrot (all 4cm3) 
• Condition 4: 3 vs 4 pieces of carrot (all 4cm3) 
• Condition 5: 4 vs 7 pieces of carrot (all 4cm3) 
• Condition 6: 6 vs 7 pieces of carrot (all 4cm3) 
The experimenter cut up carrots into the quantities and volumes listed above. For each condition, they approached the first plate and dropped one of the quantities onto it sequentially from 4cm above the plate whilst the rabbit was watching. They then approached the second plate and dropped the remaining quantity of carrots from that condition onto it sequentially, from 4cm above the plate. The rabbit approached a plate and ate the contents, with the remaining plate being taken away. Each rabbit participated in every condition once, with one trial per rabbit per session, unless the rabbit appeared unmotivated or uninterested, then the trial was not included and was repeated during the next session when possible. This was repeated for all six conditions.

Experiment 2:
The same procedure outlined above was used, but with the two food choices being a whole 6cm3 baton carrot, and a 1.5cm3 (quarter) baton carrot. Therefore, one plate had a whole 6cm3 baton, and one plate had ¼ of that. Each rabbit participated in this two times, on two separate occasions

Experiment 3:
The same procedure as experiment 1 was used, but with the two food choices being four pieces of 4cm3 carrot, and 16 pieces of 1cm3 carrot, spending 10 seconds at each plate. Each rabbit participated in this two times, on two separate occasions.
DOI: 10.17632/52xjzpzsp8.2
title: Rapid increase of soil organic carbon in karst areas in Chongqing compared with non-karst areas: storage volume and driving factors

description: chongqing soil organic carbon density data
DOI: 10.17632/9pkpyryhst.1
title: Supplementary file 1

description: Detailed overview of the antimicrobial susceptibility test results for each Pasteurellaceae isolate and WGS results from a randomized clinical trial evaluating the efficact of oxytetracycline (OTC) and florfenicol (FF) treatment for pneumonia guided by quick thoracic ultrasound. Regression of maximum consolidation depth &lt;1cm was used as a criterion for cure and to stop antimicrobial treatment. Additionally, the study assessed the associations of consolidation depth at treatment initiation with cure and treatment duration. The trial involved 320 veal calves, randomly assigned into one of two groups: one receiving OTC (n=160) and the other FF (n=160) on day 1 (2-day metaphylaxis). Clinical scoring and qTUS were done on day 1 and every 48 hours for a 10-day period. After day 1, only calves with consolidations ≥1cm were given further treatment. On each time point, maximum consolidation depth was used to categorize calves into four qTUS categories: healthy (no consolidation), mild pneumonia (consolidation &lt;1cm), moderate pneumonia (consolidation 1–3cm) and severe pneumonia (consolidation ≥3cm). Cure, treatment duration and the number of antimicrobial dosages (NAD) were compared between treatment groups. In addition, pathogen identification and antimicrobial susceptibility testing was performed on isolates from non-endoscopic broncho alveolar lavage fluid. On day 1, 30.0% (96/320) of the calves had consolidation ≥1cm, which increased to 50.9% (162/318) by day 9. After single metaphylactic treatment, cure was 20.9% (9/43) and 20.9% (9/43) in the OTC and FF group, respectively. Calves with severe pneumonia had lower odds to be cured after first treatment than calves with moderate pneumonia (Odds ratio (OR) = 0.17; 95% Confidence interval (CI): 0.04 - 0.63). By day 9, final cure of the initial cases was 27.9% in both the OTC- and FF-group. both groups, cure was similar at all observation points (P &gt; 0.05). Overall, final cure of all calves with either moderate or severe pneumonia during the trial was 41.2% (52/102) and 19.0% (12/63), respectively (P = 0.004). Median treatment duration was 4 days (Interquartile range (IQR) = 2-6; Minimum (Min)=2; Maximum (Max)=8) and was similar in both treatment groups (P = 0.59). Treatment duration for calves with moderate pneumonia (Med=6; IQR= 4-6; Min=2; Max=8) was lower than the median treatment duration of calves with severe pneumonia (Med=8; IQR= 4-8; Min=2; Max=8) (P = 0.004). When compared to calves with mild pneumonia on day 1, calves with moderate (P = 0.01) and severe pneumonia (P &lt; 0.001) had significantly longer treatment durations. In this study, cure was low and not different between both antimicrobials. Categorizing calves based on consolidation depth appears useful as both cure and treatment duration were different for the mild, moderate and severe group.
DOI: 10.17632/wh3nsdz4hn
title: 64 primer pairs developed and tested in silico for Salminus brasiliensis

description: The optimization 137 temperature was evaluated, and it was possible to select even more robust primers, yielding 64 primers pairs this value was obtained manually by the OligoAnalyser website that evaluates the presence of harpins and dimers of each primer.
DOI: 10.17632/wh3nsdz4hn.1
title: 64 primer pairs developed and tested in silico for Salminus brasiliensis

description: The optimization 137 temperature was evaluated, and it was possible to select even more robust primers, yielding 64 primers pairs this value was obtained manually by the OligoAnalyser website that evaluates the presence of harpins and dimers of each primer.
DOI: 10.15468/dl.hrwxc2
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pteropus lylei K.Andersen, 1908"
 ]
}

 The dataset includes 32 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019950-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3cn9ar
title: Occurrence Download

description: A dataset containing 114765 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Elodea densa (Planch.) Casp., Koenigia polystachya (Wall. ex Meisn.) T.M.Schust. & Reveal, Hydrocharis laevigata (Humb. & Bonpl. ex Willd.) Byng & Christenh., Reynoutria japonica Houtt.)",
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Specimen, Unknown evidence, Machine Observation, Occurrence evidence)",
 "Year is greater than or equal to 1971",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 114765 records from 785 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019913-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/ga2x-gq27
title: Contemporary  Theories  in  the  Application of AI to  English Teaching for  Non-Native Speakers 

description: The integration of artificial intelligence (AI) in the teaching of English as a Foreign Language (EFL) is on the rise alongside technological progress. This implementation is founded on various contemporary theories that have become central in academia, particularly regarding non-native speakers. These theories encompass sociocultural approaches, connectivism, and adaptive learning, which work in conjunction with AI’s capacity to tailor learning experiences and enhance language engagement.
DOI: 10.5281/zenodo.11402098
title: Refined understanding of hydrological connectivity among lakes on the Qiangtang Plateau