cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23620923.v1
title: JoonYoung Kim Raw data for Nucleus journal

description: Data set for "<strong>Revisiting the truncated lamin A produced by a commonly used strain of </strong><em><strong>Lmna </strong></em><strong>knockout mice" </strong>
DOI: 10.5281/zenodo.8111755
title: Interpreting Cis-Regulatory Interactions from Large-Scale Deep Neural Networks for Genomics

description: Results and code to replicate analysis in "Interpreting Cis-Regulatory Interactions from<br> Large-Scale Deep Neural Networks for Genomics" by Toneyan and Koo.
DOI: 10.5281/zenodo.8111754
title: Interpreting Cis-Regulatory Interactions from Large-Scale Deep Neural Networks for Genomics

description: Results and code to replicate analysis in "Interpreting Cis-Regulatory Interactions from<br> Large-Scale Deep Neural Networks for Genomics" by Toneyan and Koo.
DOI: 10.5519/qd.449u7uzk
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (46 records)
DOI: 10.25493/d7r1-b6m
title: Spontaneous cortical activity in human and ferret brain slices (in vitro) (v1)

description: Animal models provide valuable information on cortical mechanisms and dynamics, in both physiological and pathological conditions. Ferret cortical slices are a highly accessible preparation which has been used to unveil important mechanistic insights. Nevertheless, as the complexity of the cellular makeup and function of the human brain is remarkable and distinct from nonhuman species, it is essential to validate findings provided by animal models in human-based systems. Here, we collected electrophysiological recordings of spontaneous slow wave activity (Local Field Potentials, LFP) performed on ferret (n=4) and human (n=3) brain cortical slices. The recordings were performed with 30 channels (human) and 32 channels (ferret) microelectrode arrays, covering several cortical layers and columns. As such, it is possible to reconstruct the spatiotemporal profile of cortical activity. LFP were collected from the visual cortex of ferret and from temporal resections of epileptic patients requiring surgery due to refractory epilepsy. These recordings are useful not only for improving our knowledge of basic physiology of the human brain tissue but also to bridge the gap between animal studies and clinical applications.
DOI: 10.25493/kaj2-4xu
title: Impact of Thalamic Stimulation on somatomotor cortical areas and striatum in deeply anesthesized mice (v1)

description: Recent theoretical advances describing brain states from information and integration have highlighted the unique role of the thalamocortical system in leading to integrated information and thus, consciousness. Although interactions between the thalamus, striatum, and cortex are critical for cognitive function, the exact contribution of the thalamus to these interactions remains unclear. Manipulating neural activity and brain states is of significant therapeutic interest in several neurological disorders and can be achieved by electrical stimulation. In this context, this dataset provides a characterization of the impact of thalamic electrical stimulation on the cortical and striatal activity in deeply anesthetized mice. For that, we electrically stimulated ventral posteromedial thalamic nucleus to analyze the spontaneous slow oscillation activity and the evoked responses in the striatum and cortex. These results open the way to study the role of the thalamus in the spatiotemporal patterns of activity of brain states, their transitions, and their links to cognition and behavior.
DOI: 10.5281/zenodo.8111771
title: Input data: Evaluating HPX and Kokkos on RISC-V using an astrophysics application Octo-Tiger

description: Silo input files to reproduce the performance measurements.
DOI: 10.57967/hf/0844
title: moriarty122
DOI: 10.25919/9ybd-p450
title: Parkes observations for project P1185 semester 2023APRS_07

description: Ultra-long period neutron stars (ULPNSs) are an emerging class of objects that have sparked interest and curiosity in the fast transient community. Along with standard magnetars, they have been theorised to be potential progenitors of the enigmatic fast radio bursts (FRBs). The MeerTRAP project at the MeerKAT radio telescope is uncovering several magnetar and ultra-long period neutron star candidates, an example of which is PSR J0901-4046 with a period of 76s. Continued long-term monitoring of PSR J0901-4046 has shown it to be potentially transitioning into radio quiescence. The proposed observations will enable us to continue to monitor and characterise the decline in flux density. We have also discovered two new candidates MTP0027 and MTP0068 with periods of ~10 seconds and ~5 seconds respectively. Both sources exhibit magnetar-like pulse morphology and have only been detected in one epoch with MeerKAT. We propose to continue monitoring these sources to re-detect pulses and study their spectro-temporal-polarimetric properties.
DOI: 10.5281/zenodo.8111767
title: Identification of Potential DNA Gyrase Inhibitors: Virtual Screening, Extra-Precision Docking and Molecular Dynamics Simulation Study

description: These are the data generated during the research. All these data will be linked to the entitled work, which will be published as a research article.
DOI: 10.5281/zenodo.8111766
title: Identification of Potential DNA Gyrase Inhibitors: Virtual Screening, Extra-Precision Docking and Molecular Dynamics Simulation Study

description: These are the data generated during the research. All these data will be linked to the entitled work, which will be published as a research article.
DOI: 10.6084/m9.figshare.23620962
title: Supplementary Data Table 1. Deep-sea coral taxa recorded in northern Santos Basin, Brazil.

description: Deep-sea coral taxa recorded in northern Santos Basin, Brazil, with the occurrence numbers for each coral in areas A, B, C, D, and E, relative to the number of sampled coral sites.
DOI: 10.6084/m9.figshare.23620962.v1
title: Supplementary Data Table 1. Deep-sea coral taxa recorded in northern Santos Basin, Brazil.

description: Deep-sea coral taxa recorded in northern Santos Basin, Brazil, with the occurrence numbers for each coral in areas A, B, C, D, and E, relative to the number of sampled coral sites.
DOI: 10.6084/m9.figshare.23620983.v1
title: <strong>Cerebrospinal fluid cytochemical analysis from COVID-19 patients with neurological disorders</strong>

description: <strong>Background:</strong> The COVID-19 pandemic caused by SARS-CoV-2 has affected millions of people around the world. Most cytochemical studies of cerebrospinal fluid (CSF) in patients infected with SARS-CoV-2 have shown abnormal results. The objective of the present investigation was to determine the physical, cytological, and chemical alterations of the CSF cytochemical examination of COVID-19 patients with neurological disorders in Peru. <strong>Methods:</strong> An observational and cross-sectional study was carried out at the Edgardo Rebagliati Martins Hospital. The study population consisted of 94 CSF samples obtained by lumbar puncture from inpatient patients. Likewise, the paired T-test and one-way ANOVA with the Bonferroni post-hoc test was used to determine the differences in the values of CSF biochemical markers. <strong>Results:</strong> The most frequent neurological disorders were encephalopathy (43%) and brain tumor (23%). The most relevant physical characteristics were cloudy and reddish fluids in the brain tumor and intracerebral hemorrhage; however, in encephalopathies, transparent-looking liquids were observed. CSF glucose from patients with encephalopathy (30%) and intracerebral hemorrhage (13%) had concentrations &gt;70 mg/dL. Proteins &gt;45mg/dl corresponded to 20% of patients with encephalopathy and 17% of patients with intracerebral hemorrhage and brain tumor. Likewise, no differences were found in glucose concentration between neurological disorders (p&gt;0.05); however, differences in protein concentration were observed (p=0.001). Finally, among the cytological characteristics, it was found that patients with encephalopathy (33%) and brain tumor (20%) presented a leukocyte count &lt;5 cells/ul. <strong>Conclusion:</strong> These findings suggest that the characteristics of CSF may differ depending on the type of neurological complication experienced by patients with COVID-19.
DOI: 10.34740/kaggle/dsv/6074767
title: Spotify Daily Top 50 Of 63 countries + Global
DOI: 10.6084/m9.figshare.22140020
title: The genome annotation files of Apostichopus japonicus

description: The genome annotation files of Apostichopus japonicus.
DOI: 10.25442/hku.23578815
title: Supporting data for “Exploring the spatio-temporal patterns and drivers of plant thermoregulation capability on a global scale”

description: For my PhD thesis, I have collected a range of data from various sources. <br> 1). I collected data from two forest sites, Mount Changbai and Xishuangbanna Mountain. These sites were chosen due to their unique ecological characteristics and the importance of understanding the response of forest ecosystems to environmental change. The data collected from these sites include measurements of various ecological parameters such as canopy temperature, relative humidity, and leaf spectra. <br> 2). I utilized data from the public scientific community, specifically the FLUXNET 2015 dataset. This dataset contains energy, water, and carbon fluxes, which can be used to derive plant canopy temperatures and study the way plants respond to environmental change. This data was particularly useful for analyzing the impact of climate change on forest ecosystems. <br> 3). I utilized satellite imagery from public websites such as MODIS surface temperature data, leaf area index data, and some reanalysis data. This data allowed me to analyze changes in forest ecosystems over large spatial scales and provided valuable insights into the ways in which environmental change impacts forest dynamics. <br> Overall, the combination of data collected at the forest sites, publicly available scientific datasets, and satellite imagery provided a robust and comprehensive dataset for my PhD thesis, allowing for a thorough analysis of the impacts of environmental change on forest ecosystems.
DOI: 10.25442/hku.23578815.v1
title: Supporting data for “Exploring the spatio-temporal patterns and drivers of plant thermoregulation capability on a global scale”

description: For my PhD thesis, I have collected a range of data from various sources. <br> 1). I collected data from two forest sites, Mount Changbai and Xishuangbanna Mountain. These sites were chosen due to their unique ecological characteristics and the importance of understanding the response of forest ecosystems to environmental change. The data collected from these sites include measurements of various ecological parameters such as canopy temperature, relative humidity, and leaf spectra. <br> 2). I utilized data from the public scientific community, specifically the FLUXNET 2015 dataset. This dataset contains energy, water, and carbon fluxes, which can be used to derive plant canopy temperatures and study the way plants respond to environmental change. This data was particularly useful for analyzing the impact of climate change on forest ecosystems. <br> 3). I utilized satellite imagery from public websites such as MODIS surface temperature data, leaf area index data, and some reanalysis data. This data allowed me to analyze changes in forest ecosystems over large spatial scales and provided valuable insights into the ways in which environmental change impacts forest dynamics. <br> Overall, the combination of data collected at the forest sites, publicly available scientific datasets, and satellite imagery provided a robust and comprehensive dataset for my PhD thesis, allowing for a thorough analysis of the impacts of environmental change on forest ecosystems.
DOI: 10.25919/maw1-2711
title: Parkes observations for project P574 semester 2023APRS_04

description: We request time to observe 260 pulsars on a regular basis in order to provide the accurate ephemerides necessary for the detection and characterisation of gamma-ray pulsars with the Fermi satellite. The main science goals are to increase the number of known gamma-ray pulsars (both radio loud and radio quiet), to determine accurate pulse profiles, and to characterise their high energy (phase-resolved) spectra. In the radio, the observations will also allow us to investigate: neutron stars and pulsar emission via detecting glitches and determining pulse timing parameters; and the ISM via measuring and monitoring dispersion measures, Faraday rotation measures, and scintillation. To date, we are (co-)authors on over 95 papers arising from the collaboration and P574 data, including four which use UWL observations. The data have contributed to the PhD theses of students from Bordeaux, Manchester, Oxford, Stanford, and Swinburne.
DOI: 10.34740/kaggle/dsv/6074835
title: Pypi sython pandaerror handling
DOI: 10.25919/wm0n-f302
title: Parkes observations for project P1050 semester 2023APRS_06

description: This is a request for the observation time for the timing campaign of new pulsars discovered in the reprocessing of the low-latitude Galactic plane section of the HTRU-S survey (HTRU-S LowLat) and the Parkes Multibeam Pulsar Survey (PMPS). We have completed 90 % of the HTRU-S LowLat survey and completed zero acceleration PMPS search with GPU-based coherent acceleration search, template bank, and fast folding algorithm pipelines and now have discovered 112 previously unknown pulsars among which 18 were found in the PMPS. Interesting science can usually only be derived from a new pulsar after confirmation, and a follow-up timing campaign is carried out. At least one year of initial timing is the minimum timespan required to fully characterise any newly-discovered pulsars, essential for deriving pulsar parameters such as the characteristic age, magnetic field strength, and spin-down rate, as well as for detecting any unexpected behaviour of the pulsar which might result from emission instabilities. This project is necessary for the timing of several interesting pulsars, including binary pulsars, high DM pulsars, scattered profile pulsars, and bright ones that show emissions in larger bandwidths in the UWL band. Apart from this, finding the nature of a unique binary pulsar system via a dedicated observing campaign is also another goal. The follow-up timing in semester 2023APRS will assist in completing many exciting large-term science goals.
DOI: 10.5281/zenodo.8111881
title: Analysis Script of Prediction of Self-efficacy in Recognizing Deepfake based on HEXACO Personality Traits

description: <em><strong>Analysis Script (JASP) </strong></em>of Prediction of Self-efficacy in Recognizing Deepfake based on HEXACO Personality Traits
DOI: 10.5281/zenodo.8111880
title: Analysis Script of Prediction of Self-efficacy in Recognizing Deepfake based on HEXACO Personality Traits

description: <em><strong>Analysis Script (JASP) </strong></em>of Prediction of Self-efficacy in Recognizing Deepfake based on HEXACO Personality Traits
DOI: 10.5281/zenodo.8111335
title: Repositório de imagens com desinformação

description: Repositório de dados contendo 12.209 imagens sintéticas para estudos sobre detecção de fake news.
DOI: 10.5281/zenodo.8111336
title: Repositório de imagens com desinformação

description: Repositório de dados contendo 12.209 imagens sintéticas para estudos sobre detecção de fake news.
DOI: 10.5281/zenodo.8111854
title: Repositório de imagens com desinformação

description: Repositório de dados contendo 12.209 imagens sintéticas para estudos sobre detecção de fake news.
DOI: 10.5281/zenodo.8111884
title: Repositório de imagens com desinformação

description: Repositório de dados contendo 12.209 imagens sintéticas para estudos sobre detecção de fake news.
DOI: 10.6084/m9.figshare.23621127
title: Low Birh Weight in HIV

description: low birth weight in patients with HIV/AIDS
DOI: 10.5281/zenodo.7841152
title: Deleted dataset

description: this dataset was deleted
DOI: 10.5281/zenodo.7841153
title: Deleted dataset

description: this dataset was deleted
DOI: 10.6084/m9.figshare.23621169
title: Arthropod_Midden_Data.csv

description: Information about the age, taxonomic identification, and location of all reported arthropod remains identified within rodent paleomiddens. Papers used in this study were found via a search on Web of Science, by reviewing the references of these papers, and by searching the Neotoma paleoecological database. <br> This dataset includes information about the paper that each observation was pulled from, the midden forming agent that produced the midden, and other miscelaneous information useful for interpreting and filtering the data.
DOI: 10.25919/8w0r-9904
title: Parkes observations for project P1168 semester 2023APRS_06

description: We discovered seven pulsars in the globular cluster Terzan 1 with the Green Bank Telescope (GBT), the first pulsars to be found in this cluster. The discoveries include five fully-recycled millisecond pulsars (MSPs) with spin periods between 3 and 6 ms, an 11-ms MSP, and a pulsar with an unusually long spin period of 134 ms. Our preliminary timing suggested that all seven are likely isolated pulsars, consistent with Terzan 1 being a core-collapsed globular cluster. The 134-ms pulsar is an especially interesting discovery in the context of pulsar formation via electron-capture rather than core-collapse supernovae. We observed Terzan 1 at Parkes with the UWL receiver in 2022OCT to test whether the pulsars could be detected and thus timed at Parkes. All seven pulsars are significantly detected in both observations. We propose a year-long timing campaign with Parkes/UWL to obtain phase-connected timing solutions for these pulsars; we request continuing status to continue these timing observations through 2023OCT. To refine the timing parameters and probe the pulsars' acceleration in the cluster potential, we will extend phase connection beyond one year using the 2022OCT observations, and we will attempt to phase connect back to the original GBT discovery pointings. In addition to timing, we will probe the pulsars' polarization properties and the Galactic magnetic field in the direction of Terzan 1; and the proposed observations will also be searched for new pulsars that may have been missed in previous observations.
DOI: 10.5281/zenodo.8111909
title: Contents of Supplemental Table S15 of the gradient analysis of Mesotaenium endlicherianum

description: Contents of the large Supplemental Table S15 of the study "Environmental gradients reveal stress hubs predating plant terrestrialization"
DOI: 10.5281/zenodo.8111908
title: Contents of Supplemental Table S15 of the gradient analysis of Mesotaenium endlicherianum

description: Contents of the large Supplemental Table S15 of the study "Environmental gradients reveal stress hubs predating plant terrestrialization"
DOI: 10.6084/m9.figshare.23621265
title: Additional file 1 of Differential expression of the circadian clock network correlates with tumour progression in gliomas

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.23621265.v1
title: Additional file 1 of Differential expression of the circadian clock network correlates with tumour progression in gliomas

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.23621278
title: Additional file 2 of Systematic discovery of gene fusions in pediatric cancer by integrating RNA-seq and WGS

description: Additional file 2. Quality control metrics. Data quality metrics for the WGS and RNA data used in this study: median and mean coverage, percentage of duplicates and read counts.
DOI: 10.6084/m9.figshare.23621278.v1
title: Additional file 2 of Systematic discovery of gene fusions in pediatric cancer by integrating RNA-seq and WGS

description: Additional file 2. Quality control metrics. Data quality metrics for the WGS and RNA data used in this study: median and mean coverage, percentage of duplicates and read counts.
DOI: 10.6084/m9.figshare.23621281
title: Additional file 3 of Systematic discovery of gene fusions in pediatric cancer by integrating RNA-seq and WGS

description: Additional file 3. Column descriptions for tables S1 and S2.
DOI: 10.6084/m9.figshare.23621281.v1
title: Additional file 3 of Systematic discovery of gene fusions in pediatric cancer by integrating RNA-seq and WGS

description: Additional file 3. Column descriptions for tables S1 and S2.
DOI: 10.6084/m9.figshare.23621284
title: Additional file 4 of Systematic discovery of gene fusions in pediatric cancer by integrating RNA-seq and WGS

description: Additional file 4: Table S1. High confidence tumor-specific gene fusions. Gene fusions for which underlying SVs are resolved with high confidence as tumor-specific or low AF variants. Also included are the gene fusions caused by a composite SV detected by at least two tools (e.g. ASPSCR1--TFE3). See Additional file 3 for column descriptions.
DOI: 10.6084/m9.figshare.23621287
title: Additional file 5 of Systematic discovery of gene fusions in pediatric cancer by integrating RNA-seq and WGS

description: Additional file 5: Table S2. Validation by targeted assays for clinically relevant gene fusions. For 28 clinically relevant fusions targeted assays were conducted validating the presence of the fusion. Abbreviations: fluorescence in situ hybridization (FISH), single nucleotide polymorphism (SNP) array, reverse transcription polymerase chain reaction (RT-PCR), and immunohistochemistry (IHC).
DOI: 10.6084/m9.figshare.23621287.v1
title: Additional file 5 of Systematic discovery of gene fusions in pediatric cancer by integrating RNA-seq and WGS

description: Additional file 5: Table S2. Validation by targeted assays for clinically relevant gene fusions. For 28 clinically relevant fusions targeted assays were conducted validating the presence of the fusion. Abbreviations: fluorescence in situ hybridization (FISH), single nucleotide polymorphism (SNP) array, reverse transcription polymerase chain reaction (RT-PCR), and immunohistochemistry (IHC).
DOI: 10.6084/m9.figshare.23621290
title: Additional file 6 of Systematic discovery of gene fusions in pediatric cancer by integrating RNA-seq and WGS

description: Additional file 6: Table S3. Distinct high confidence gene fusions. Gene fusions from Table S1 mapped to distinct fusions such that fusions occurring in multiple patients are merged and listed only once.
DOI: 10.6084/m9.figshare.23621290.v1
title: Additional file 6 of Systematic discovery of gene fusions in pediatric cancer by integrating RNA-seq and WGS

description: Additional file 6: Table S3. Distinct high confidence gene fusions. Gene fusions from Table S1 mapped to distinct fusions such that fusions occurring in multiple patients are merged and listed only once.
DOI: 10.6084/m9.figshare.23621284.v1
title: Additional file 4 of Systematic discovery of gene fusions in pediatric cancer by integrating RNA-seq and WGS

description: Additional file 4: Table S1. High confidence tumor-specific gene fusions. Gene fusions for which underlying SVs are resolved with high confidence as tumor-specific or low AF variants. Also included are the gene fusions caused by a composite SV detected by at least two tools (e.g. ASPSCR1--TFE3). See Additional file 3 for column descriptions.
DOI: 10.6084/m9.figshare.23621307.v1
title: Additional file 2 of Genetically mimicked effects of ASGR1 inhibitors on all-cause mortality and health outcomes: a drug-target Mendelian randomization study and a phenome-wide association study

description: Additional file 2: Tab. S9. Associations of genetically mimicked ASGR1 inhibitors with 1951 phenotypes for both sexes in the UK Biobank. Tab. S10. Associations of genetically mimicked ASGR1 inhibitors with 1600 phenotypes for women in the UK Biobank. Tab. S11. Associations of genetically mimicked ASGR1 inhibitors with 1523 phenotypes for men in the UK Biobank.