cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.47nwmc
title: Occurrence Download

description: A dataset containing 49539253 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Menura novaehollandiae, Mimus gilvus, Mimus polyglottos, Minla cyanouroptera, Minla strigula, Mirafra javanica, Molothrus ater, Molothrus bonariensis, Monticola solitarius, Motacilla citreola, Mycerobas affinis, Mycerobas carnipes, Mycerobas icterioides, Nectarinia tacazze, Neochmia ruficauda, Neochmia temporalis, Onychognathus morio, Onychognathus nabouroup, Onychognathus tristramii, Oriolus auratus, Oriolus chinensis, Oriolus larvatus, Oriolus xanthornus, Paludipasser locustella, Paroaria coronata, Paroaria dominicana, Passer castanopterus, Passer domesticus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 49539253 records from 5926 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000462-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k5a4zp
title: Occurrence Download

description: A dataset containing 967 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Russian Federation",
 "OccurrenceStatus is Present",
 "TaxonKey is Impatiens parviflora",
 "Year 2015-2019"
 ]
}

 The dataset includes 967 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006847-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16259176
title: Supplementary dataset for "Quantifying past ENSO variability from Tridacna δ18O using a pseudo-proxy baseline approach".

description: The supplementary dataset contains the data and code for the Tridacna PSM and ShellChron.
DOI: 10.5281/zenodo.18456206
title: Supplementary dataset for "Quantifying past ENSO variability from Tridacna δ18O using a pseudo-proxy baseline approach".

description: The supplementary dataset contains the data and code for the Tridacna PSM and ShellChron.
DOI: 10.6084/m9.figshare.31229555
title: An International Prospective, Non-Randomized Comparative Study with Articulating Laparoscopic Instruments in Benign Adnexal Gynecologic Surgery

description: Articulated laparoscopic instruments such as Artisential<sup>®</sup> offer enhanced dexterity compared with conventional tools, but evidence for their use in benign gynecologic surgery remains limited. This multicenter, prospective, non-randomized comparative study evaluated the feasibility and perioperative safety of Artisential<sup>®</sup> instruments using contemporaneous controls. Consecutive patients undergoing laparoscopic surgery for benign adnexal disease between December 2022 and August 2024 were enrolled in Korea, Taiwan, and Japan. Patients who consented underwent surgery using Artisential<sup>®</sup>, while those who declined were treated with conventional laparoscopic instruments and included as retrospectively collected controls. Propensity score matching was performed based on age, body mass index, history of previous abdominal surgery, and type of surgery. Outcomes included operation time, estimated blood loss, postoperative hospital stay, and Clavien–Dindo–graded complications. A total of 184 patients were analyzed, and 112 matched patients were included after matching. No significant differences were observed between groups in operative outcomes. No conversions or transfusions occurred, and postoperative complications were infrequent and limited to grade I superficial port-site issues. These findings support the feasibility and short-term safety of Artisential<sup>®</sup> instruments in benign adnexal surgery, although randomized trials are needed to further evaluate ergonomic and economic benefits.
DOI: 10.6084/m9.figshare.31229555.v1
title: An International Prospective, Non-Randomized Comparative Study with Articulating Laparoscopic Instruments in Benign Adnexal Gynecologic Surgery

description: Articulated laparoscopic instruments such as Artisential<sup>®</sup> offer enhanced dexterity compared with conventional tools, but evidence for their use in benign gynecologic surgery remains limited. This multicenter, prospective, non-randomized comparative study evaluated the feasibility and perioperative safety of Artisential<sup>®</sup> instruments using contemporaneous controls. Consecutive patients undergoing laparoscopic surgery for benign adnexal disease between December 2022 and August 2024 were enrolled in Korea, Taiwan, and Japan. Patients who consented underwent surgery using Artisential<sup>®</sup>, while those who declined were treated with conventional laparoscopic instruments and included as retrospectively collected controls. Propensity score matching was performed based on age, body mass index, history of previous abdominal surgery, and type of surgery. Outcomes included operation time, estimated blood loss, postoperative hospital stay, and Clavien–Dindo–graded complications. A total of 184 patients were analyzed, and 112 matched patients were included after matching. No significant differences were observed between groups in operative outcomes. No conversions or transfusions occurred, and postoperative complications were infrequent and limited to grade I superficial port-site issues. These findings support the feasibility and short-term safety of Artisential<sup>®</sup> instruments in benign adnexal surgery, although randomized trials are needed to further evaluate ergonomic and economic benefits.
DOI: 10.6084/m9.figshare.27275247
title: Variation in ginsenoside content and composition within the American ginseng population

description: The contents of 57 ginsenosides were measured in American ginseng roots collected from a single population grown in Jilin. Ginsenoside contents and compositions varied significantly among the population. The most abundant ginsenoside within the American ginseng root and by population was either Rg<sub>1</sub> or Re, followed by Rb<sub>1</sub>, mal-Rb<sub>1</sub>, Rd, Rc, pseudoginsenoside F<sub>11</sub>, Ro, and gypenoside XVII. According to the relative contents of Rg<sub>1</sub> and Re, the population was grouped into two chemotypes, and there were significant differences in ginsenoside profiles between them. The contents of protopanaxadiol-type ginsenosides were relatively stable. The rate-limiting enzymes of malonyl ginsenosides biosynthesis were located in front of their corresponding neutral ginsenosides. The regulatory sites of the oleanolic acid-type ginsenosides biosynthetic pathway were in front of the <i>β</i>-amyrin.
DOI: 10.6084/m9.figshare.27275247.v1
title: Variation in ginsenoside content and composition within the American ginseng population

description: The contents of 57 ginsenosides were measured in American ginseng roots collected from a single population grown in Jilin. Ginsenoside contents and compositions varied significantly among the population. The most abundant ginsenoside within the American ginseng root and by population was either Rg<sub>1</sub> or Re, followed by Rb<sub>1</sub>, mal-Rb<sub>1</sub>, Rd, Rc, pseudoginsenoside F<sub>11</sub>, Ro, and gypenoside XVII. According to the relative contents of Rg<sub>1</sub> and Re, the population was grouped into two chemotypes, and there were significant differences in ginsenoside profiles between them. The contents of protopanaxadiol-type ginsenosides were relatively stable. The rate-limiting enzymes of malonyl ginsenosides biosynthesis were located in front of their corresponding neutral ginsenosides. The regulatory sites of the oleanolic acid-type ginsenosides biosynthetic pathway were in front of the <i>β</i>-amyrin.
DOI: 10.6084/m9.figshare.30913264
title: Unveiling mechanistic effects of mast cell in the progression of fibrosis and malignant transformation of oral submucous fibrosis: a systematic review and meta-analysis

description: Oral submucous fibrosis (OSMF) is a ubiquitous fatal fibrotic mucosal disease with multifactorial etiology and complex pathogenesis. The role of mast cells in the pathophysiology of OSMF remains uncharted territory owing to a dearth of studies. Thus, the present systematic review and meta-analysis aimed to unentangle the mysteric role of mast cells in the pathogenesis, progression of fibrosis and malignant transformation of OSMF. Using various databases, full-text articles that investigated mast cell concentrations in OSMF were entailed for review. A modified Newcastle-Ottawa scale was employed to evaluate the risk of bias in all articles and Review Manager was utilized for meta-analysis. Twenty and fourteen qualified articles, respectively, were included for qualitative and quantitative data synthesis. Progressive amplification of mast cell density is linked with fibrosis-induced malignant transformation of OSMF. The fixed-effect model also confirmed that significantly upregulated mast cell counts have a decreased risk of association with control as well as a significantly increased risk of being associated with early-stage fibrosis and malignant transformation of OSMF. This review authenticates the mechanistic effects of mast cells in the pathogenesis, chronicity, progression of fibrosis and malignant transformation of OSMF.
DOI: 10.6084/m9.figshare.30913264.v1
title: Unveiling mechanistic effects of mast cell in the progression of fibrosis and malignant transformation of oral submucous fibrosis: a systematic review and meta-analysis

description: Oral submucous fibrosis (OSMF) is a ubiquitous fatal fibrotic mucosal disease with multifactorial etiology and complex pathogenesis. The role of mast cells in the pathophysiology of OSMF remains uncharted territory owing to a dearth of studies. Thus, the present systematic review and meta-analysis aimed to unentangle the mysteric role of mast cells in the pathogenesis, progression of fibrosis and malignant transformation of OSMF. Using various databases, full-text articles that investigated mast cell concentrations in OSMF were entailed for review. A modified Newcastle-Ottawa scale was employed to evaluate the risk of bias in all articles and Review Manager was utilized for meta-analysis. Twenty and fourteen qualified articles, respectively, were included for qualitative and quantitative data synthesis. Progressive amplification of mast cell density is linked with fibrosis-induced malignant transformation of OSMF. The fixed-effect model also confirmed that significantly upregulated mast cell counts have a decreased risk of association with control as well as a significantly increased risk of being associated with early-stage fibrosis and malignant transformation of OSMF. This review authenticates the mechanistic effects of mast cells in the pathogenesis, chronicity, progression of fibrosis and malignant transformation of OSMF.
DOI: 10.15468/dl.v9huew
title: Occurrence Download

description: A dataset containing 290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Talisia nervosa",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 290 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006849-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18456154
title: Carbon Nanotube Hydrogels Reveal Threshold-Dependent Regulation of Neuroblastoma Cell Growth and Maturation by Mechanical and Chemical Factors

description: Carbon nanotube (CNT)-based hydrogels have the potential to serve as 3D platforms for nerve regeneration. However, the interplay between different cues governing the formation of a complex tissue-like cellular structure is still ambiguous. Herein, two approaches are adopted to develop PVA/CNT hydrogels using phase inversion method and low kinetic gelation, enabling unprecedented CNT loading capacity (75% w/w) without compromising their elasticity. By controlling key factors affecting cell coverage and maturation, including Young's modulus (YM), CNT concentration, and pore size, distinct thresholds are identified where these factors dominate cell coverage. Results demonstrated that when CNT exceeds 60% w/w or a coating is applied to enhance CNT-cell interaction, CNT effect dominates, increasing cell coverage with increasing CNT concentration. However, below a specific YM threshold, YM dominates cell growth, covering up to 50% of the scaffold surface regardless of CNT concentration or exposure. Lastly, controlling the pore size to 100-250 mu m further increased cell coverage to >70%, breaking through previous plateau and upregulating TUBB3 maturity marker. Additionally, certain key factors are seen to synergistically codominate in determining cell growth.
DOI: 10.5281/zenodo.18456153
title: Carbon Nanotube Hydrogels Reveal Threshold-Dependent Regulation of Neuroblastoma Cell Growth and Maturation by Mechanical and Chemical Factors

description: Carbon nanotube (CNT)-based hydrogels have the potential to serve as 3D platforms for nerve regeneration. However, the interplay between different cues governing the formation of a complex tissue-like cellular structure is still ambiguous. Herein, two approaches are adopted to develop PVA/CNT hydrogels using phase inversion method and low kinetic gelation, enabling unprecedented CNT loading capacity (75% w/w) without compromising their elasticity. By controlling key factors affecting cell coverage and maturation, including Young's modulus (YM), CNT concentration, and pore size, distinct thresholds are identified where these factors dominate cell coverage. Results demonstrated that when CNT exceeds 60% w/w or a coating is applied to enhance CNT-cell interaction, CNT effect dominates, increasing cell coverage with increasing CNT concentration. However, below a specific YM threshold, YM dominates cell growth, covering up to 50% of the scaffold surface regardless of CNT concentration or exposure. Lastly, controlling the pore size to 100-250 mu m further increased cell coverage to >70%, breaking through previous plateau and upregulating TUBB3 maturity marker. Additionally, certain key factors are seen to synergistically codominate in determining cell growth.
DOI: 10.60686/t-fsd4010
title: FSD4010 Quality and Effectiveness of Social Work: Client Survey for Families with Children 2025
DOI: 10.5281/zenodo.18436146
title: Nature's blueprint to signaling-decoupled GPCR endocytosis - MD simulations

description: # Nature's blueprint to signaling-decoupled GPCR endocytosis - MD simulations

This repository contains the molecular dynamics (MD) simulation data used in the manuscript:

"Nature's blueprint to signaling-decoupled GPCR endocytosis"

## Contents

The dataset includes raw topology files (.gro) and trajectory files (.xtc) for each system analyzed in the study after minimization and equilibration. The initial input files for system setup using CHARMM-GUI are also provided.

Additionally included are protein-centered topology files (.pdb) and trajectory files (.dcd) for all replicas, as well as a renumbered version of the receptor chain used as MDPath input. The systems used for the creation of the dynophore figure, based on ligand-centered structures, are also provided.

Each simulation subdirectory is organized by:- Active/Inactive state- Protein/Ligand

## Directory Structure

Supporting_Material/├── AT1R active/├── AT1R inactive/└── README

## Example File Naming

For the AngII-bound system:- Input file for CHARMM-GUI setup: `AT1R_with_ANGII_prepared`- Corresponding replica files are located within each subdirectory

## Usage

These data files can be used to:- Reproduce the analyses in the manuscript- Perform additional studies based on this data
DOI: 10.14278/rodare.4479
title: Data publication: Development of cathepsin B-activatable cell-penetrating peptides for tumor targeting

description: Rohdaten (insbesondere fluorimetrisch erfasster Substratumsatz), Fluoreszenmikroskopie, Datensätze PET-Bildgenung, Dateien für Abbildungen
DOI: 10.14278/rodare.4478
title: Data publication: Development of cathepsin B-activatable cell-penetrating peptides for tumor targeting

description: Rohdaten (insbesondere fluorimetrisch erfasster Substratumsatz), Fluoreszenmikroskopie, Datensätze PET-Bildgenung, Dateien für Abbildungen
DOI: 10.25345/c5rf5kv5c
title: MassIVE MSV000100687 - Disruption of cAMP Signalling and RNA Regulation Confers Cefiderocol Resistance in Acinetobacter baumannii
title: The rise of cefiderocol resistance among Gram-negative pathogens is undermining its clinical potential. Here, we demonstrate that clinical isolates of carbapenem-resistant Acinetobacter baumannii (CRAB) can develop cefiderocol resistance through previously unrecognised point mutations in the adenylate cyclase CavA and deletions within the glycine-rich RNA-binding domains of the major post-transcriptional regulator Hfq. These mutation were observed to be present in contemporary clinical isolates of CRAB, globally. In a murine model of CRAB lung infection, these mutations conferred resistance in vivo without imposing significant fitness costs. Moreover, using CLASHseq and integrated omics analyses, we provide the first evidence that Hfq directly modulates iron homeostasis at the post-transcriptional level in A. baumannii and identify an association between naturally occurring Hfq polymorphisms in CRAB and increased cefiderocol resistance. Collectively, these findings reveal that mutations in gene expression modulators (CavA) and regulators (Hfq) constitute a novel clinically relevant pathway for cefiderocol resistance in this WHO priority pathogen.
DOI: 10.5517/ccdc.csd.cc2f155v
title: CCDC 2235446: Experimental Crystal Structure Determination

description: Related Article: Raychelle Burks, Lars Öhrström, Francoise M. Amombo Noa|2024|J.Forensic Sci.|69|291|doi:10.1111/1556-4029.15403
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f156w
title: CCDC 2235447: Experimental Crystal Structure Determination

description: Related Article: Raychelle Burks, Lars Öhrström, Francoise M. Amombo Noa|2024|J.Forensic Sci.|69|291|doi:10.1111/1556-4029.15403
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f158y
title: CCDC 2235449: Experimental Crystal Structure Determination

description: Related Article: Raychelle Burks, Lars Öhrström, Francoise M. Amombo Noa|2024|J.Forensic Sci.|69|291|doi:10.1111/1556-4029.15403
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f159z
title: CCDC 2235450: Experimental Crystal Structure Determination

description: Related Article: Raychelle Burks, Lars Öhrström, Francoise M. Amombo Noa|2024|J.Forensic Sci.|69|291|doi:10.1111/1556-4029.15403
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g4751
title: CCDC 2268182: Experimental Crystal Structure Determination

description: Related Article: Evgeny V. Shchegolkov, Anastasia N. Perminova, Natalia A. Malkova, Svetlana O. Kushch, Yanina V. Burgart, Galina A. Triandafilova, Sergey Yu. Solodnikov, Olga P. Krasnykh, Victor I. Saloutin|2023|Chem. Sel.|8|e202303265|doi:10.1002/slct.202303265
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gkyss
title: CCDC 2281376: Experimental Crystal Structure Determination

description: Related Article: Evgeny V. Shchegolkov, Anastasia N. Perminova, Natalia A. Malkova, Svetlana O. Kushch, Yanina V. Burgart, Galina A. Triandafilova, Sergey Yu. Solodnikov, Olga P. Krasnykh, Victor I. Saloutin|2023|Chem. Sel.|8|e202303265|doi:10.1002/slct.202303265
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hb2fc
title: CCDC 2303592: Experimental Crystal Structure Determination

description: Related Article: Wensen Liu, Yahui Liu, Hui Su, Jian Zhang, Pengfei Shi, Jie Liang, Zhaowu Zhu|2024|Hydrometallurgy|227|106337|doi:10.1016/j.hydromet.2024.106337
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hxj21
title: CCDC 2321313: Experimental Crystal Structure Determination

description: Related Article: Thomas J. Kuczmera, Pim Puylaert, Boris J. Nachtsheim|2024|Beilstein J.Org.Chem.|20|1677|doi:10.3762/bjoc.20.149
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k34hb
title: CCDC 2356511: Experimental Crystal Structure Determination

description: Related Article: Seungwon Lee|2024|CSD Communication|||
description: Related Article: Seungwon Lee, Geunmoo Song, Kyu-Sung Jeong|2024|Angew.Chem.,Int.Ed.|63|e202410884|doi:10.1002/anie.202410884
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.