DOI: 10.6084/m9.figshare.12016986.v2
title: meta_data

description: <b>tblhctmeta.csv: Day and source of hematopoietic cell transplant (HCT) for 1,279 patients</b>PatientID: deidentified identifier of patientsDayOfTransplant: deidentified day of HCTHCTSource: hematopoietic cell sources for HCT patients (BM_unmodified: bone marrow; PBSC_unmodified: peripheral blood stem cells; TCD: T-cell depleted; cord: cord blood)Disease: disease of patientswbcPatientId, autoFmtPatientId, nejmPatientId: identifiers for the same patients if they were also included in another previous study (wbcPatientId: Schluter, J. et al. 2019. The gut microbiota influences circulatory immune cell dynamics in humans. <i>BioRxiv</i>; autoFmtPatientId: Taur, Y. et al. 2018. Reconstitution of the gut microbiota of antibiotic-treated patients by autologous fecal microbiota transplant. <i>Science Translational Medicine</i> 10(460); nejmPatientId: Peled, J.U. et al. 2020. Microbiota as Predictor of Mortality in Allogeneic Hematopoietic-Cell Transplantation. <i>New England Journal of Medicine</i>, <i>382</i>(9), pp.822-834.)EngraftmentDayRelativeToNearestTransplantDay: engraftment day relative to the nearest day of bone marrow transplant<br><br><b>tbldrug.csv: Timing and route of drug administration for 1,279 patients</b>PatientID: deidentified identifier of patientsStartTimepoint: deidentified day when drug administration startedStopTimepoint: deidentified day when drug administration stopped (including the day)Factor: name of the drugCategory: category of the drugAntiInfective: whether the drug is an anti-infective agentRoute: route of drug administrationStartDayRelativeToNearestTransplantDay/StopDayRelativeToNearestTransplantDay: start/stop day of the drug administration relative to the nearest day of bone marrow transplant<br><b>tblInfectionsCidPapers.csv: Day of positive blood cultures for 457 patients </b>(include only microbes analyzed in<b> </b>1. Taur, Y., et al. 2012. Intestinal domination and the risk of bacteremia in patients undergoing allogeneic hematopoietic stem cell transplantation. <i>Clinical infectious diseases</i>, <i>55</i>(7), pp.905-914; 2. Stoma, I., et al. 2020. Compositional flux within the intestinal microbiota and risk for bloodstream infection with gram-negative bacteria. <i>Clinical Infectious Diseases</i>.)PatientID: deidentified identifier of patientsTimepoint: deidentified day of infectionInfectiousAgent: the bacteria causing infectionsDayRelativeToNearestTransplantDay: day of infection relative to the nearest day of bone marrow transplant<br><b>tblbc.csv: Daily measurements of white blood cells, platelets and red blood cells for 1,279 patients</b>PatientID: deidentified ID of patientsTimepoint: deidentified day of blood cell measurementBloodCellType: immature monocyte cells (ImmatureMonocytes), sezary cells (SezaryCells), variant lymphocyte cells (VariantLymphocytes), immature granulocyte cells (ImmatureGranulocytes), band cells (BandCells), basophil cells (Basophills), blast cells (BlastCells), eosinophil cells (Eosinophils), lymphocyte cells (Lymphocytes), neutrophil cells (Neutrophils), monocyte cells (Monocytes), platelet (Platelets), total white blood cells (WBCtotal), total red blood cells (RBCtotal)Value: blood cell counts<br>Unit: K per uL (1,000 cells/uL) or M per uL (1,000,000 cells/uL)DayRelativeToNearestTransplantDay: day of blood cell measurement relative to the nearest day of bone marrow transplant<br><br><b>tbltemperature.csv: </b>temperatures for 1,317 patientsPatientID: deidentified identifier of patientsTimepoint: deidentified day when patient temperature was measuredMaxTemperature: Maximum temperature (unit: Fahrenheit) recorded on that day for that patientDayRelativeToNearestTransplantDay: day of temperature measurement relative to the nearest day of bone marrow transplant<br><br><b>tblVanA.csv</b>: Results of PCR detection for <i>vanA </i>gene for 7,589 samplesSampleID: stool sample identifier VanA: whether <i>vanA</i> gene is detected in the sample