cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19095818.v1
title: Supplementary Material for: <b><i>APOL1</i></b> Risk Variants Associated with Serum Albumin in a Population-Based Cohort Study

description: <b><i>Introduction:</i></b> The association of apolipoprotein L1 (<i>APOL1</i>) nephropathy risk variants (<i>APOL1</i>), unique to African-ancestry (African-American [AA]) populations, with systemic inflammation, a contributor to chronic kidney disease (CKD) and end-stage kidney disease (ESKD) is ill-defined. This study aimed to describe the role of inflammatory markers in the relationship between <i>APOL1</i> and incident kidney outcomes using a prospective cohort study. <b><i>Methods:</i></b> <i>APOL1</i> high-risk status under a recessive genetic model was studied in 10,605 AA adults aged ≥45 years from the Reasons for Geographic and Racial Differences in Stroke study. The primary variables of interest were inflammatory markers: C-reactive protein (mg/dL), white blood cell count (cells/mm<sup>3</sup>), and serum albumin (sALB) (mg/dL). High inflammation status was defined if at least one of these inflammatory markers exceeded clinical threshold. The association between <i>APOL1</i> and biomarkers were assessed using regression models adjusting for age, sex, ancestry, hypertension, lipid medications, albumin-to-creatinine ratio, and estimated glomerular filtration rate (eGFR). Models were stratified by diabetes status. We identified incident ESKD using USRDS linkage, and we defined incident CKD as an eGFR &lt;60 mL/min/1.73 m<sup>2</sup> and ≥25% decline in the eGFR and normal baseline eGFR and tested for mediation of <i>APOL1</i> and outcomes by biomarkers using the causal inference approach. <b><i>Results:</i></b> Among 7,151 participants with data available on all inflammation markers, 4,479 participants had ≥1 marker meeting the clinical threshold. <i>APOL1</i> high-risk status was associated with lower adjusted odds of reduced sALB {odds ratio (OR) (95% confidence interval [CI]): 0.59 [0.36, 0.96])}, and this association was significant in people with diabetes (OR [95% CI]: 0.40 [0.18, 0.89]) but not in those without diabetes. There was no association of <i>APOL1</i> high-risk status with other markers or high inflammation status. <i>APOL1</i> was independently associated with ESKD (OR [95% CI] = 1.78 [1.28, 2.48]) and CKD (OR [95% CI] = 1.38 [1.00, 1.91]). On mediation analysis, the direct effect between <i>APOL1</i> and ESKD strengthened after accounting for sALB, but the estimated mediated effect was not statistically significant (OR [95% CI]: 0.98 [0.92, 1.05], <i>p</i> = 0.58). <b><i>Conclusion:</i></b> <i>APOL1</i> high-risk variants were associated with sALB. However, sALB did not statistically mediate the association between <i>APOL1</i> and incident ESKD.
DOI: 10.6084/m9.figshare.22888097.v1
title: Realistic Digital City Dataset (Full Version)

description: RDCD consists of high-resolution RGB images and corresponding ground-truth depth images in 12 adverse disturbances.
DOI: 10.6084/m9.figshare.12471461.v18
title: Supplementary data for Knight et al. eLife 2021;10:e64325

description: 1. Supplementary File 1 (Summary data; MLST, pangenome, taxonomy, GWAS, toxins)<br> 2. Supplementary File 2 (Global MLST tree file, manuscript Figure 2) <br><br> 3. Supplementary File 3 (BEAST tree file, manuscript Figure 4)<br> 4. Supplementary File 4 (BactDating tree file, manuscript Figure 4)<br>5. Supplementary File 5 Genome assemblies for final 260 ST dataset (gff format)
DOI: 10.6084/m9.figshare.22302739.v1
title: Untitled Item

description: <pre><code>UAV pictures</code></pre>
DOI: 10.6084/m9.figshare.24056208.v1
title: Test set

description: The test set of AgCNER contains 5975 sentences.
DOI: 10.6084/m9.figshare.15170582.v1
title: Geographic pattern in the community structure of arboreal insects in beech forests in northern Japan

description: Forest ecosystems have high biodiversity with ecologically diverse animals and plants. The forest canopy supports high biodiversity, and canopy insects are important components owing to their high species richness and abundance. Although many studies have investigated the vertical stratification of arboreal insects, the formation process of geographic patterns in the arboreal insect community structure is not well understood. We analyzed arboreal insect communities in Japanese beech forests in northern Japan to examine their formation process of geographic pattern with geographic distance. We set eight study sites and collected insects monthly from June to September 2015 and 2016. We collected 2070 individuals from 479 species in 14 orders. We tested for nested structure in communities by distance and examined the correlation between the geographic distance and the dissimilarity of community structure. The insect community structure was nested by distance. When we classified insects by order into herbivore or carnivore, we found a positive correlation in herbivorous Hemiptera, while we were not able to find any correlations in other taxa. We collected a number of arboreal insect species that also occur in southern Japan at some sites. These results suggest that the arboreal insect communities in northern Japan change with geographic distance because they include taxa with a poor dispersal ability and some species from the southern beech forest along with the mountain area.
DOI: 10.6084/m9.figshare.3552876.v1
title: Appendix A. Photographs of nests of bee species included in the study.

description: Photographs of nests of bee species included in the study.
DOI: 10.6084/m9.figshare.7907999.v1
title: Supplementary Material for: Canagliflozin Prevents Intrarenal Angiotensinogen Augmentation and Mitigates Kidney Injury and Hypertension in Mouse Model of Type 2 Diabetes Mellitus

description: <b><i>Background:</i></b> Hypertension and renal injury are common complications of type 2 diabetes mellitus (T2DM). Hyperglycemia stimulates renal proximal tubular angiotensinogen (AGT) expression via elevated oxidative stress contributing to the development of high blood pressure and diabetic nephropathy. The sodium glucose cotransporter 2 (SGLT2) in proximal tubules is responsible for the majority of glucose reabsorption by renal tubules. We tested the hypothesis that SGLT2 inhibition with canagliflozin (CANA) prevents intrarenal AGT augmentation and ameliorates kidney injury and hypertension in T2DM. <b><i>Methods:</i></b> We induced T2DM in New Zealand obese mice with a high fat diet (DM, 30% fat) with control mice receiving regular fat diet (ND, 4% fat). When DM mice exhibited &gt; 350 mg/dL blood glucose levels, both DM- and ND-fed mice were treated with 10 mg/kg/day CANA or vehicle by oral gavage for 6 weeks. We evaluated intrarenal AGT, blood pressure, and the development of kidney injury. <b><i>Results:</i></b> Systolic blood pressure in DM mice (133.9 ± 2.0 mm Hg) was normalized by CANA (113.9 ± 4.0 mm Hg). CANA treatment ameliorated hyperglycemia-associated augmentation of renal AGT mRNA (148 ± 21 copies/ng RNA in DM, and 90 ± 16 copies/ng RNA in DM + CANA) and protein levels as well as elevation of urinary 8-isoprostane levels. Tubular fibrosis in DM mice (3.4 ± 0.9-fold, fibrotic score, ratio to ND) was suppressed by CANA (0.9 ± 0.3-fold). Furthermore, CANA attenuated DM associated increased macrophage infiltration and cell proliferation in kidneys of DM mice. <b><i>Conclusions:</i></b> CANA prevents intrarenal AGT upregulation and oxidative stress and which may mitigate high blood pressure, renal tubular fibrosis, and renal inflammation in T2DM.
DOI: 10.17632/2vtwn578fn.1
title: Measurement dataset for radio (RSSI) map under campus scenario (117mX97m)

description: The radio map, radio environment map (REM), or RSSI map, can visualize the information of invisible electromagnetic spectrum, and is vital for monitoring, management, and security of spectrum
resources in cognitive radio (CR) networks. It is useful for the abnormal spectral activity detection,
radiation source localization, spectrum resource management, etc.

The performance of different REM construction methods should be compared based on the data under realistic scenarios. So we measured the signal strength under campus scenario by a spectrum sensing system. This project includes two datasets as
1) Raw received signal strength: Collecting RSSI data at the sampled positions in the ROI (117mX97m).
2) Constructed REM data: Recovery RSSI data at the unsampled positions and obtain a whole REM

The dataset has been applied and validated in the following references.
[1]. Q. Zhu et al., DEMO Abstract: An UAV-based 3D Spectrum Real-time Mapping System, 2022 IEEE Conference on Computer Communications Workshops (INFOCOM WKSHPS), New York, NY, USA, 2022, pp. 1-2.
[2]. Y. Zhao, et al. Temporal prediction for spectrum environment maps with moving radiation sources, IET Communications, vol. 17, no. 5, pp. 538–548, 2023.
[3] J. Wang, et al., “Sparse Bayesian Learning-Based 3D Radio Environment Map Construction—Sampling Optimization, Scenario-Dependent Dictionary Construction and Sparse Recovery,” IEEE Transactions on Cognitive Communications and Networking, vol.10, pp.80-93, Feb. 2024. 
[4]. J. Wang, ea al. Sparse Bayesian Learning-Based Hierarchical Construction for 3D Radio Environment Maps Incorporating Channel Shadowing, IEEE Transactions on Wireless Communications, IEEE Transactions on Wireless Communications, 2024, vol.23, no.10, pp.14560-14574, Oct. 2024. 
[5] Yang Huang, et al. Space-Based Electromagnetic Spectrum Sensing and Situation Awareness. Space Sci Technol. 2024;4:0109. DOI:10.34133/space.0109
[6]. Q. Gao, et al. Spatial Sensor Layout Optimization for Radio Environment Map Construction, 2024 IEEE Globecom Workshops, 2024, for publication

More details and instrucitons can be found in the guidemanual_measuredCompus_117m_97m.pdf.
DOI: 10.6084/m9.figshare.12197991.v1
title: Koutsidi_Moukas_Tzanatos_Table_S2.xlsx

description: Supplementary material _Table S2 The competition between 205 species of Mediterranean nekton examined, specifically regarding: (a) habitat use, (b) food resources of adult/mature stages, (c) spawning habitat use. Also, in this table combinations of traits by resource that are not in use from any of the 205 species analysed, are indicated (empty/possibly available niches) The excel file has 3 worksheets: (1) habitat_use: This worksheet contains the 205 species examined, sorted by the modalities of the traits (optimal depth, habitat type, seabed type) relevant to habitat use. The trait depth range, appearing at the table (characterizing a species as eurybathic or stenobathic) for habitat use, was added, not to describe resource use, but to indicate the intensity of potential competition. (2) adult_food: This worksheet contains the 205 species examined, sorted by the modalities of the traits (maximum length, trophic level, feeding type, diet) relevant to the use of food resources by mature fish. (3) spawning_habitat: This worksheet contains the 205 species examined, sorted by the modalities of the traits (spawning period, spawning habitat) relevant to spawning habitat use<br>
DOI: 10.6084/m9.figshare.14869518.v1
title: Table S3_Methodological quality.xlsx

description: Table S3 - Methodological quality. Supplementary data for Ziam, Gignac, Mc Sween-Cadieux & Courant (2021) published in Evidence & Policy
DOI: 10.6084/m9.figshare.28458098.v1
title: SPSS data. Microbial counts of cow raw milk samples collected from five districts in the winter season.

description: Microbial counts of cow raw milk samples collected from five districts in the winter season.
DOI: 10.6084/m9.figshare.7883558.v1
title: gVCF_HG01089

description: 1000 Genomes gVCF mapped to hs37d5 for HG01089. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.12301685.v1
title: Raw data and scripts from Negative Results on Deploying Distributed Series Reactance Devices to Improve Power System Robustness Against Cascading Failures

description: Raw data and scripts from Negative Results on Deploying Distributed Series Reactance Devices to Improve Power System Robustness Against Cascading Failures
DOI: 10.6084/m9.figshare.25676409.v3
title: ISM Matrices

description: The structural self-interaction, initial reachability, final reachability and level partitions matrices are provided.
DOI: 10.6084/m9.figshare.7140149.v1
title: Supplementary Material for: NCOA3 Loss Disrupts Molecular Signature of Chondrocytes and Promotes Posttraumatic Osteoarthritis Progression

description: <b><i>Background/Aims:</i></b> Osteoarthritis (OA) is the most common joint disease. Recently, a novel variant near the nuclear receptor coactivator 3 (<i>NCOA3</i>) has been identified in association with greater risk of developing OA. However, how NCOA3 is regulated in chondrocytes and involved in OA pathogenesis remain elusive. <b><i>Methods:</i></b> The expression and DNA methylation of <i>NCOA3</i> in knee OA cartilage and <i>in vitro</i> dedifferentiated chondrocytes with or without rs6094710 SNP were analyzed by qRT-PCR, immunoblotting, methylation-specific PCR and bisulfite sequencing. NCOA3 was depleted by siRNA or shRNA or inhibited by a chemical inhibitor to assess its role in chondrocyte dedifferentiation or OA pathogenesis in posttraumatic OA animal model established by cruciate ligament transection surgery. <b><i>Results:</i></b> We found that compared with normal counterparts, samples with rs6094710 SNP failed to upregulate NCOA3. Further evidence associated this phenotype with DNMT1-mediated hypermethylation in gene promoter region. Moreover, we showed that NCOA3 maintained the molecular signature of chondrocytes dedifferentiating <i>in vitro</i> or exposed to IL-1β, nevertheless, NCOA3 appeared dispensable for preventing OA initiation, since NCOA3 loss did not trigger OA in young mice. Instead, NCOA3 loss promoted posttraumatic OA progression, and in parallel, enhanced NF-κB activation. Finally, the promoted posttraumatic OA progression was significantly retarded when administrated with NF-κB pathway inhibitor, suggesting that NCOA3 lose promotes posttraumatic OA at least partially by enhancing NF-κB activation. <b><i>Conclusion:</i></b> Thus, our findings indicate a critical role of NCOA3 in chondrocytes, and imply that manipulating NCOA3 might present a potential therapeutic approach to interfere OA progression.
DOI: 10.17632/2vtwn578fn.2
title: Measured dataset for radio map under campus scenario (117mX97m)

description: The radio map, radio environment map (REM), or RSSI map, can visualize the information of invisible electromagnetic spectrum, and is vital for monitoring, management, and security of spectrum
resources in cognitive radio (CR) networks. It is useful for the abnormal spectral activity detection,
radiation source localization, spectrum resource management, etc.

The performance of different REM construction methods should be compared based on the data under realistic scenarios. So we measured the signal strength under campus scenario by a spectrum sensing system. This project includes two datasets as
1) Raw received signal strength: Collecting RSSI data at the sampled positions in the ROI (117mX97m).
2) Constructed REM data: Recovery RSSI data at the unsampled positions and obtain a whole REM

The dataset has been applied and validated in the following references.
[1]. Q. Zhu et al., DEMO Abstract: An UAV-based 3D Spectrum Real-time Mapping System, 2022 IEEE Conference on Computer Communications Workshops (INFOCOM WKSHPS), New York, NY, USA, 2022, pp. 1-2.
[2]. Y. Zhao, et al. Temporal prediction for spectrum environment maps with moving radiation sources, IET Communications, vol. 17, no. 5, pp. 538–548, 2023.
[3] J. Wang, et al., “Sparse Bayesian Learning-Based 3D Radio Environment Map Construction—Sampling Optimization, Scenario-Dependent Dictionary Construction and Sparse Recovery,” IEEE Transactions on Cognitive Communications and Networking, vol.10, pp.80-93, Feb. 2024. 
[4]. J. Wang, ea al. Sparse Bayesian Learning-Based Hierarchical Construction for 3D Radio Environment Maps Incorporating Channel Shadowing, IEEE Transactions on Wireless Communications, IEEE Transactions on Wireless Communications, 2024, vol.23, no.10, pp.14560-14574, Oct. 2024. 
[5] Yang Huang, et al. Space-Based Electromagnetic Spectrum Sensing and Situation Awareness. Space Sci Technol. 2024;4:0109. DOI:10.34133/space.0109
[6]. Q. Gao, et al. Spatial Sensor Layout Optimization for Radio Environment Map Construction, 2024 IEEE Globecom Workshops, 2024, for publication

More details and instrucitons can be found in the guidemanual_measuredCompus_117m_97m.pdf.
DOI: 10.6084/m9.figshare.28872338.v1
title: SRR3414629.uniq.sorted.bam

description: It is only my homework
DOI: 10.6084/m9.figshare.8949209.v1
title: Sea Star Wasting Syndrome Modeling: Cox Proportional Hazards Data and Code

description: Sea Star Wasting Syndrome (SSWS) has been ongoing in echinoderm species of the North American Pacific Coast. Previous outbreaks, as well as the most recent one, have reduced sea 21 star populations to near-absence in many locations. To identify potential factors correlated with SSWS appearance, we combined intertidal surveys, citizen scientist disease observations, and environmental data. I modeled relationships between environmental variables and the risk of a site's transition from healthy to infected using a Cox Proportional Hazards Model. More information at www.seastarwasting.org. Sea star observations can be viewed interactively at data.piscoweb.org/marine1/seastardisease.html.If using any of these sea star observations or datasets, please acknowledge the Multi-Agency Rocky Intertidal Network (MARINe) and the Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO).This code was written as part of the doctoral thesis of Monica Moritsch: Moritsch, M. (2018). Ecological causes and consequences of Sea Star Wasting Syndrome on the Pacific coast. UC Santa Cruz. ProQuest ID: Moritsch_ucsc_0036E_11614. Merritt ID: ark:/13030/m5x39vdx. Retrieved from https://escholarship.org/uc/item/9dr8t5kq
DOI: 10.6084/m9.figshare.21997289.v1
title: Optimal Myoelectric Control Strategy And Site Selection For Upper Limb Prostheses

description: Current two-site myoelectric control strategy selection and site-finding processes are often slow, challenging, and can lead to sub-optimal outcomes. Liberating Technologies, Inc., along with its clinical partners and Worcester Polytechnic Institute (WPI) aim to improve these processes. LTI is developing a diagnostic device that clinicians can use to accurately and efficiently location the optimal control strategy and electrode location. The device accomplishes this by recording the electrical signal on large portions of the patient’s arm. The aim is that electrode sites and control strategy selection will lead to greater device adoption, a reduction in contralateral overuse injuries, and an improved quality of life for individuals with upper limb difference.
DOI: 10.6084/m9.figshare.13373003.v2
title: 2016台风及暴雨相关的微博数据

description: 该数据包括了2016年6月-12月期间在微博中出现的与台风、暴雨相关的数据。具体字段包括：<br>text 微博文本；<br><br>mood 微博情绪, 0为愤怒，1为厌恶，2为高兴，3为悲伤，4为恐惧，-1为无情绪；<br>is_spam 不使用；<br>created_at 创建时间；<br>user_id 用户id；<br>user_city 城市；<br>user_province 省份；<br>user_location 用户位置；<br>user_verified 是否认证用户, 1为认证；<br>forward_source 转发来源；<br>mentioned_users 提到的用户；<br>predict_label 有效性预测标签， 1为有效的与自然灾害相关的数据。
DOI: 10.6084/m9.figshare.21082264.v1
title: A Molecular Description of Hydrogel Forming Polymers for Cement-Based Printing Paste Applications

description: This data supports the work found in <strong>A Molecular Description of Hydrogel Forming Polymers for Cement-Based Printing Paste Applications, </strong>Gels (2022). <br>
DOI: 10.6084/m9.figshare.26633961.v1
title: Additional file 11 of Landscape of enhancer disruption and functional screen in melanoma cells

description: Additional file 11: Table S10. H3k27ac signal of patients captured by enhancers.
DOI: 10.6084/m9.figshare.19103339.v1
title: Datasets

description: Tiff files: Maps of Above Ground Biomass change (2019-2020) over the study region near Iñapari, Peru, derived from the texture of the NIR band for SPOT-7 (SPOT_DeltaAGB_Map), PlanetScope (PlanetScope_DeltaAGB_Map.tif) and Sentinel-2 (Sentinel2_DeltaAGB_Map.tif) data for a 1-ha resolution.<br>QML file contains the style for the biomass change maps. <br>Shapefile contains location of four selectively logged plots.<br>CSV file contains data on observed changes in these four plots, obtained by TLS and manual inventory.
DOI: 10.6084/m9.figshare.13358660.v1
title: 201021 SABgal analysis NSF shControl ApoF OE shBcat ApoF OE.pzfx

description: Senescence-associated β-galactosidase assay comparing stained cells among NMR Skin Fibroblast [NSF (1) shControl-&gt; (2) ApoF Overxpression, (1) shβ-catenin-&gt;(2) ApoF OE, (1) ApoF OE-&gt; (2)shβ-catenin]. <br>Note: (1) First transduction(2) Second transduction
DOI: 10.6084/m9.figshare.27169110.v2
title: Phenotypic and genotypic data

description: This is the yield and the genotypic data used for the analysis
DOI: 10.6084/m9.figshare.12726896.v2
title: DNA aptamers on SARS-CoV-2 spike protein

description: The gzipped tar file contains the initial configurations from docking for the 8_1, 10_1 and 12_1 structures of the two DNA aptamers interacting with the receptor binding domain of the SARS-CoV-2 spike protein; the clusters from a long MD trajectory for the 10_1 structure; sample trajectories in GROMACS compressed xtc format for the 3 structures; the reconstructed trajectory from umbrella sampling simulation in xtc format for the 10_1 (note: in order to plot xtc trajectories, a GROMACS configuration file must first be reconstructed from the PDB, with the GROMACS utility pdb2gmx).
DOI: 10.6084/m9.figshare.1614897.v2
title: Tabla 3.3 Esquema de puntajes

description: Como puede verse, en la primera etapa hay dos valores para las respuestas correctas, correspondientes a las respuestas correctas dadas inmediatamente y para aquellas obtenidas luego de un proceso de análisis. Esto se realizó para tratar de darle un poco más de dispersión a los puntajes del grupo 4 y, así, diferenciar en algo sus desempeños Acosta-Silva, D. A. (2016, April 18). <i>La sensitividad cognitiva: hacia un modelo de su funcionamiento</i>. Tesis doctoral para optar al título de Doctor en Ciencias Sociales, Niñez y Juventud. Centro de Estudios Avanzados en Niñez y Juventud (Cinde), Universidad de Manizales http://doi.org/10.17605/OSF.IO/TZPF6
DOI: 10.6084/m9.figshare.23264951.v1
title: music and math

description: the data for music effect on math performance <br>