cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28022549
title: <b>Species </b><b>D</b><b>iversity of </b><b>E</b><b>dible </b><b>M</b><b>ushroom</b><b>s</b><b>Ⅰ</b><b>–</b><b>Four </b><b>N</b><b>ew </b><b>Laccaria </b><b>S</b><b>pecies from Yunnan Province</b><b>, </b><b>China</b>

description: As symbiotic mycorrhizal associates, species within the genus Laccaria play pivotal roles in forest ecosystems, specifically forming ectomycorrhizal relationships with the root systems of various plants. Some Laccaria species are recognized for their edibility, holding potential as a sustainable food source in the context of future food security and dietary diversification. In this study, species diversity of Laccariain Yunnan was investigated, and four novel species were identified. Their taxonomical positions and phylogenetic affinities were confirmed through the phylogenetic analysis base on ITS, nrLSU, tef1-αand rpb2 sequence data. Macro- and micro-morphological characteristics of the new species are also given here. Laccaria browniisp. nov. has dark to slightly desaturated orange pileus, stipe context broadly fistulose and soft orange, and relatively smaller cheilocystidia and pleurocystidia. Laccaria orangeisp. nov. has hemispherical to paraboloid pileus, abundant narrowly clavate, flexuose, and branches cheilocystidia. Laccaria rubersp. nov. pileus is red on the margin, clearly striate on thepileus surface, basidia clavate, mostly 4-spored, rarely 2-spored. Laccaria stipalbasp. nov. stipe surface is white, long sterigmata (4–13 μm × 2–3 μm), pleurocystidia narrowly clavate to subclavate, flexuose or mucronate, rarely branch. Descriptions, illustrations and phylogenetic analysis results of the new taxa are provided. In addition, the new taxa are compared with closely related taxa.
DOI: 10.6084/m9.figshare.28022549.v1
title: <b>Species </b><b>D</b><b>iversity of </b><b>E</b><b>dible </b><b>M</b><b>ushroom</b><b>s</b><b>Ⅰ</b><b>–</b><b>Four </b><b>N</b><b>ew </b><b>Laccaria </b><b>S</b><b>pecies from Yunnan Province</b><b>, </b><b>China</b>

description: As symbiotic mycorrhizal associates, species within the genus Laccaria play pivotal roles in forest ecosystems, specifically forming ectomycorrhizal relationships with the root systems of various plants. Some Laccaria species are recognized for their edibility, holding potential as a sustainable food source in the context of future food security and dietary diversification. In this study, species diversity of Laccariain Yunnan was investigated, and four novel species were identified. Their taxonomical positions and phylogenetic affinities were confirmed through the phylogenetic analysis base on ITS, nrLSU, tef1-αand rpb2 sequence data. Macro- and micro-morphological characteristics of the new species are also given here. Laccaria browniisp. nov. has dark to slightly desaturated orange pileus, stipe context broadly fistulose and soft orange, and relatively smaller cheilocystidia and pleurocystidia. Laccaria orangeisp. nov. has hemispherical to paraboloid pileus, abundant narrowly clavate, flexuose, and branches cheilocystidia. Laccaria rubersp. nov. pileus is red on the margin, clearly striate on thepileus surface, basidia clavate, mostly 4-spored, rarely 2-spored. Laccaria stipalbasp. nov. stipe surface is white, long sterigmata (4–13 μm × 2–3 μm), pleurocystidia narrowly clavate to subclavate, flexuose or mucronate, rarely branch. Descriptions, illustrations and phylogenetic analysis results of the new taxa are provided. In addition, the new taxa are compared with closely related taxa.
DOI: 10.6084/m9.figshare.c.3614726_d3
title: Additional file 5: Table S4. of Transcriptome analysis indicated that Salmonella lipopolysaccharide-induced thymocyte death and thymic atrophy were related to TLR4-FOS/JUN pathway in chicks

description: List of qPCR primers. (XLS 27 kb)
DOI: 10.6084/m9.figshare.c.3614714_d7
title: Additional file 5: of Expression of OsMYB55 in maize activates stress-responsive genes and enhances heat and drought tolerance

description: List of all DEG in roots. (XLSX 5556 kb)
DOI: 10.6084/m9.figshare.c.3614741_d1
title: Additional file 2: of Expression of a fungal manganese peroxidase in Escherichia coli: a comparison between the soluble and refolded enzymes

description: Raw data used for the production of Fig.Â 6 and Fig.Â 7. (XLSX 67 kb)
DOI: 10.6084/m9.figshare.c.3614726_d2
title: Additional file 4: Table S3. of Transcriptome analysis indicated that Salmonella lipopolysaccharide-induced thymocyte death and thymic atrophy were related to TLR4-FOS/JUN pathway in chicks

description: Detailed information on genes involved in merged IPA pathways at different time point. Genes involved in merged IPA pathways with Pâ
DOI: 10.6084/m9.figshare.c.3614714_d4
title: Additional file 9: of Expression of OsMYB55 in maize activates stress-responsive genes and enhances heat and drought tolerance

description: Comparison of DEG: MYB55 line vs. WT and heat responsive. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3614714_d3
title: Additional file 13: of Expression of OsMYB55 in maize activates stress-responsive genes and enhances heat and drought tolerance

description: Oligonucleotide primers used in real-time quantitative PCR. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3614714_d1
title: Additional file 10: of Expression of OsMYB55 in maize activates stress-responsive genes and enhances heat and drought tolerance

description: Common DEG in MYB55 line leaf control condition. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3614714_d2
title: Additional file 4: of Expression of OsMYB55 in maize activates stress-responsive genes and enhances heat and drought tolerance

description: List of all DEG in stems. (XLSX 5394 kb)
DOI: 10.6084/m9.figshare.c.3613865_d4
title: Additional file 15: Table S10. of Differential expression profiling of the early response to Ustilaginoidea virens between false smut resistant and susceptible rice varieties

description: Statistics of RNA-Seq reads mapped to the reference genome of U. virens at 24 h and 48 h after inoculation in IR28 and LYP9. (XLSX 21 kb)
DOI: 10.15468/dl.yfrwb8
title: Occurrence Download

description: A dataset containing 63440 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oncaeidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 63440 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032853-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3613865_d3
title: Additional file 8: Table S5. of Differential expression profiling of the early response to Ustilaginoidea virens between false smut resistant and susceptible rice varieties

description: The enriched signaling and biosynthetic pathways of DEGs in IR28 and LYP9 at 24 hpi and 48 hpi revealed by KEGG enrichment analysis. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3613865_d2
title: Additional file 17: Table S11. of Differential expression profiling of the early response to Ustilaginoidea virens between false smut resistant and susceptible rice varieties

description: The enriched GO terms under three different categories for up-regulated and down-regulated U. virens genes in IR28 and LYP9. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3613859_d2
title: Additional file 4:Table S1.  of Bmi-1 regulates stem cell-like properties of gastric cancer cells via modulating miRNAs

description: The expression of Bmi-1 in paired primary and ovary metastatic tissues of gastric cancer ( McNemar test). (XLS 14 kb)
DOI: 10.6084/m9.figshare.c.3612986_d14
title: Additional file 9: Table S8. of Differential transcriptomic responses to Fusarium graminearum infection in two barley quantitative trait loci associated with Fusarium head blight resistance

description: List of 139 genes with higher expression levels in the 2Hb8 R NIL in both mock and fungal treatments compared to M69 at 48 hai. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.c.3612977_d12
title: Additional file 1: Table S1. of Genome-wide identification and expression profiling of serine proteases and homologs in the diamondback moth, Plutella xylostella (L.)

description: Description of serine protease (SP) and serine protease homolog (SPH) genes in P. xylostella. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3612986_d12
title: Additional file 14: Table S13. of Differential transcriptomic responses to Fusarium graminearum infection in two barley quantitative trait loci associated with Fusarium head blight resistance

description: List of 34 up-regulated genes in both R NILs when compared to respective susceptible recurrent parents at 48 hai. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3612977_d10
title: Additional file 10: Table S3. of Genome-wide identification and expression profiling of serine proteases and homologs in the diamondback moth, Plutella xylostella (L.)

description: RPKM values of the PxSP and PxSPH genes at different developmental stages obtained from the RNA-seq data. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3612986_d11
title: Additional file 5: Table S4. of Differential transcriptomic responses to Fusarium graminearum infection in two barley quantitative trait loci associated with Fusarium head blight resistance

description: Lists of DEGs identified in pairwise comparisons in TableÂ 1. (XLSX 734Â kb)
DOI: 10.6084/m9.figshare.c.3612986_d10
title: Additional file 18: Table S17. of Differential transcriptomic responses to Fusarium graminearum infection in two barley quantitative trait loci associated with Fusarium head blight resistance

description: Lists of differentially expressed lncRNAs identified in all pairwise comparisons. (XLSX 131Â kb)
DOI: 10.6084/m9.figshare.c.3612977_d9
title: Additional file 2: Table S2. of Genome-wide identification and expression profiling of serine proteases and homologs in the diamondback moth, Plutella xylostella (L.)

description: The predicted amino acid sequences of 221 SPs/SPHs. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.c.3612986_d9
title: Additional file 2: Table S1. of Differential transcriptomic responses to Fusarium graminearum infection in two barley quantitative trait loci associated with Fusarium head blight resistance

description: Pearson correlation coefficients between DON and ergosterol concentrations. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3612986_d6
title: Additional file 10: Table S9. of Differential transcriptomic responses to Fusarium graminearum infection in two barley quantitative trait loci associated with Fusarium head blight resistance

description: List of 201 genes with higher expression levels in comparison 2Hb8 R/M69_M48 and lower expression in comparison 2Hb8 R/M69_F96. (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.c.3612986_d3
title: Additional file 12: Table S11. of Differential transcriptomic responses to Fusarium graminearum infection in two barley quantitative trait loci associated with Fusarium head blight resistance

description: List of 19 candidate genes for the 2Hb8 QTL. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3612986_d1
title: Additional file 4: Table S3. of Differential transcriptomic responses to Fusarium graminearum infection in two barley quantitative trait loci associated with Fusarium head blight resistance

description: Detailed information of RNA-Seq samples. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3612986_d2
title: Additional file 6: Table S5. of Differential transcriptomic responses to Fusarium graminearum infection in two barley quantitative trait loci associated with Fusarium head blight resistance

description: Primer sequences and results of qPCR validation of RNA-Seq experiments. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3612977_d3
title: Additional file 13: Table S4. of Genome-wide identification and expression profiling of serine proteases and homologs in the diamondback moth, Plutella xylostella (L.)

description: RPKM values of the PxSP and PxSPH genes at different developmental tissues obtained from the RNA-seq data. (XLSX 23 kb)
DOI: 10.15468/dl.tp9ewa
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is A new species of Nemipterus (Pisces: Nemipteridae) from the Western Indian Ocean"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032854-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3612254_d8
title: Additional file 4: Table S4. of Development of Genome-Wide Insertion and Deletion Polymorphism Markers from Next-Generation Sequencing Data in Rice

description: InDels with major allele difference ≥8 bp. (XLS 10074 kb)
DOI: 10.15468/dl.jzxv4n
title: Occurrence Download

description: A dataset containing 474 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caligidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 474 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032855-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3612254_d7
title: Additional file 8: Table S8. of Development of Genome-Wide Insertion and Deletion Polymorphism Markers from Next-Generation Sequencing Data in Rice

description: Allele number and polymorphic information content for InDel and SSR. (XLS 43Â kb)
DOI: 10.6084/m9.figshare.c.3612254_d5
title: Additional file 3: Table S3. of Development of Genome-Wide Insertion and Deletion Polymorphism Markers from Next-Generation Sequencing Data in Rice

description: InDels with major allele difference ≥3 bp. (XLS 19671 kb)
DOI: 10.6084/m9.figshare.c.3612254_d6
title: Additional file 5: Table S5. of Development of Genome-Wide Insertion and Deletion Polymorphism Markers from Next-Generation Sequencing Data in Rice

description: Ontology analysis of genes affected by InDels with PIC ≥ 0.5 and major allele difference ≥3 bp in CDS region. (XLS 85 kb)
DOI: 10.6084/m9.figshare.c.3612254_d4
title: Additional file 1: Table S1. of Development of Genome-Wide Insertion and Deletion Polymorphism Markers from Next-Generation Sequencing Data in Rice

description: Description of rice genotypes for e-PCR. (XLS 357Â kb)
DOI: 10.6084/m9.figshare.c.3612254_d3
title: Additional file 7: Table S7. of Development of Genome-Wide Insertion and Deletion Polymorphism Markers from Next-Generation Sequencing Data in Rice

description: Chromosomal position and primer sequence for 100 SSRs. (XLS 33Â kb)
DOI: 10.6084/m9.figshare.c.3612254_d2
title: Additional file 6: Table S6. of Development of Genome-Wide Insertion and Deletion Polymorphism Markers from Next-Generation Sequencing Data in Rice

description: Chromosomal position and primer sequence for 100 InDel markers. (XLS 37Â kb)
DOI: 10.6084/m9.figshare.c.3612254_d1
title: Additional file 2: Table S2. of Development of Genome-Wide Insertion and Deletion Polymorphism Markers from Next-Generation Sequencing Data in Rice

description: e-PCR products of rice genotypes. (XLS 208Â kb)
DOI: 10.6084/m9.figshare.c.3612221_d3
title: Additional file 3: Table S17. of Integrative network analysis of nineteen brain regions identifies molecular signatures and networks underlying selective regional vulnerability to Alzheimerâ  s disease

description: Top 10,000 probesets ranked in association with disease traits across 19 brain regions. (XLSX 6710 kb)
DOI: 10.6084/m9.figshare.c.3612221_d1
title: Additional file 1: of Integrative network analysis of nineteen brain regions identifies molecular signatures and networks underlying selective regional vulnerability to Alzheimerâ  s disease

description: This document contains Supplementary Tables S1â  16, plus their associated legends/captions. (XLSX 6505 kb)
DOI: 10.6084/m9.figshare.c.3611402_d2
title: Additional file 2: of Post-translational modifications are enriched within protein functional groups important to bacterial adaptation within a deep-sea hydrothermal vent environment

description: List of PTMs. (XLSX 696 kb)
DOI: 10.18419/darus-4613
title: BayesValidRox 1.1.0

description: Release 1.1.0 of BayesValidRox. BayesValidRox is an open-source python package that provides methods for surrogate modeling, Bayesian inference and model comparison. (2024-07-18)
description: Use persistent identifiers from Software Heritage (
 
) to cite individual files or even lines of the source code.
DOI: 10.6084/m9.figshare.c.3610793_d1
title: Additional file 1: Table S1. of Maternal vitamin D depletion alters DNA methylation at imprinted loci in multiple generations

description: (This additional file contains details for all statistical analysis performed, including p values, effect sizes, q values, regression model, and method of statistical test.) (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3610727_d9
title: Additional file 2: of Evolutionary triangulation: informing genetic association studies with evolutionary evidence

description: Melanoma GWAS hits. Type 2 diabetes mellitus GWAS hits. Multiple sclerosis GWAS hits. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3610727_d6
title: Additional file 9: of Evolutionary triangulation: informing genetic association studies with evolutionary evidence

description: PBS analysis using CEU and YRI as the pre-selected populations and other available HapMap III populations as the outlier populations genes associated with diseases that are appropriately distributed between CEU and YRI genes associated with diseases that are appropriately distributed among CEU, YRI and GIH and identifed with ET genes show up across all PBS analysis. (XLSX 14 kb)
DOI: 10.15468/dl.62db9e
title: Occurrence Download

description: A dataset containing 12009 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ectinosomatidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12009 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032856-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.257mr2
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pseudohandelia umbellifera (Boiss.) Tzvelev"
 ]
}

 The dataset includes 35 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032857-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3609620_d9
title: Additional file 8: Table S8. of RNA-seq-based digital gene expression analysis reveals modification of host defense responses by rice stripe virus during disease symptom development in Arabidopsis

description: DEGs involved in protein phosphorylation at 14 dpi. (XLSX 52Â kb)
DOI: 10.6084/m9.figshare.c.3609620_d7
title: Additional file 7: Table S7. of RNA-seq-based digital gene expression analysis reveals modification of host defense responses by rice stripe virus during disease symptom development in Arabidopsis

description: DEGs involved in secondary metabolism at 21 dpi. (XLSX 55Â kb)
DOI: 10.6084/m9.figshare.c.3609620_d8
title: Additional file 2: Table S2. of RNA-seq-based digital gene expression analysis reveals modification of host defense responses by rice stripe virus during disease symptom development in Arabidopsis

description: DEGs expressed at 14 dpi. (XLSX 73Â kb)
DOI: 10.6084/m9.figshare.c.3609620_d6
title: Additional file 4: Table S4. of RNA-seq-based digital gene expression analysis reveals modification of host defense responses by rice stripe virus during disease symptom development in Arabidopsis

description: Up-regulated DEGs involved in defense response at 14 dpi. (XLSX 56Â kb)
DOI: 10.6084/m9.figshare.c.3609620_d5
title: Additional file 11: Table S11. of RNA-seq-based digital gene expression analysis reveals modification of host defense responses by rice stripe virus during disease symptom development in Arabidopsis

description: A comparison of DEGs between RSV and eleven plant viruses in Arabidopsis. (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.c.3609626_d4
title: Additional file 1: Table S2. of Follicular fluid biomarkers for human in vitro fertilization outcome: Proof of principle

description: Patientsâ   characteristics. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3609620_d4
title: Additional file 12: Table S12. of RNA-seq-based digital gene expression analysis reveals modification of host defense responses by rice stripe virus during disease symptom development in Arabidopsis

description: DEGs affected by RSV and all eleven viruses. (XLSX 81Â kb)
DOI: 10.6084/m9.figshare.c.3609626_d2
title: Additional file 3: Table S3. of Follicular fluid biomarkers for human in vitro fertilization outcome: Proof of principle

description: Spectrum report. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3609626_d1
title: Additional file 2: Table S1. of Follicular fluid biomarkers for human in vitro fertilization outcome: Proof of principle

description: Ne protein identifications. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3609620_d3
title: Additional file 6: Table S6. of RNA-seq-based digital gene expression analysis reveals modification of host defense responses by rice stripe virus during disease symptom development in Arabidopsis

description: DEGs involved in secondary metabolism at 14 dpi. (XLSX 51Â kb)
DOI: 10.6084/m9.figshare.c.3609620_d2
title: Additional file 10: Table S10. of RNA-seq-based digital gene expression analysis reveals modification of host defense responses by rice stripe virus during disease symptom development in Arabidopsis

description: DEGs involved in protein phosphorylation at 21 dpi. (XLS 17Â kb)
DOI: 10.6084/m9.figshare.c.3609548_d11
title: Additional file 12: Table S7. of iTRAQ-based quantitative proteomic analysis reveals the distinct early embryo myofiber type characteristics involved in landrace and miniature pig

description: Detail of some important myogenic proteinsâ   interaction network identified by STRING ( http://string-db.org/ ). (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3609548_d9
title: Additional file 5: Table S2. of iTRAQ-based quantitative proteomic analysis reveals the distinct early embryo myofiber type characteristics involved in landrace and miniature pig

description: List of significantly changed DEPs identified by iTRAQ between LR and WZS at 4 stages. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3609548_d8
title: Additional file 3: Table S1. of iTRAQ-based quantitative proteomic analysis reveals the distinct early embryo myofiber type characteristics involved in landrace and miniature pig

description: Complete list of up and down-regulated proteins identified by iTRAQ. (XLS 1326Â kb)
DOI: 10.26180/27824145
title: SEC data from THF SEC

description: Raw SEC data about the polymer molecular weight distribution of the project
DOI: 10.26180/27824145.v1
title: SEC data from THF SEC

description: Raw SEC data about the polymer molecular weight distribution of the project
DOI: 10.6084/m9.figshare.c.3608393_d12
title: Additional file 5: of Identification of apoptosis-related microRNAs and their target genes in myocardial infarction post-transplantation with skeletal myoblasts

description: Table S5. Restoring microRNA data of microRNA arrays in rat hart simples.
DOI: 10.6084/m9.figshare.c.3608435_d8
title: Additional file 10: Dataset S2. of Genomic and transcriptomic analysis of the streptomycin-dependent Mycobacterium tuberculosis strain 18b

description: Differential gene expression analysis results of SS18b (2 weeks STR depletion, 4 weeks STR depletion and re-addition of STR). (XLSX 2308 kb)