cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25422/azu.data.27948387.v1
title: Alignment data for "Complex roles for proliferating cell nuclear antigen in restricting human cytomegalovirus replication"

description: DNA viruses at once elicit and commandeer host pathways, including DNA repair pathways for virus replication. Despite encoding its own DNA polymerase and processivity factor, human cytomegalovirus (HCMV) recruits the cellular processivity factor, proliferating cell nuclear antigen (PCNA) and specialized host DNA polymerases involved in translesion synthesis (TLS) to replication compartments (RCs) where viral DNA (vDNA) is synthesized. While the recruitment of TLS polymerases is important for viral genome stability, the role of PCNA is poorly understood. PCNA function in DNA repair is regulated by monoubiquitination (mUb) or SUMOylation of PCNA at lysine 164 (K164). We find that mUb-PCNA increases over the course of infection, and modification of K164 is required for PCNA-mediated restriction of virus replication. mUb-PCNA plays important known roles in recruiting TLS polymerases to DNA, which we have shown are important for viral genome integrity and diversity, represented by novel junctions and single nucleotide variants (SNVs), respectively. We find that PCNA drives SNVs on vDNA similar to Y-family TLS polymerases, but that this did not require modification at K164. Unlike TLS polymerases, PCNA was dispensable for preventing large scale rearrangements on vDNA. These striking results suggest separable PCNA-dependent and -independent functions of TLS polymerases on vDNA. By extension, these results imply roles for TLS polymerase beyond their canonical function in TLS in host biology. These findings highlight PCNA as a complex restriction factor for HCMV infection, likely with multiple distinct roles, and provides new insights into the PCNA-mediated regulation of DNA synthesis and repair in viral infection.<br><br><br><i>For inquiries regarding the contents of this dataset, please contact the Corresponding Author listed in the README.txt file. Administrative inquiries (e.g., removal requests, trouble downloading, etc.) can be directed to data-management@arizona.edu</i>
DOI: 10.15468/dl.947pee
title: Occurrence Download

description: A dataset containing 38717 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-75.439 6.06404,-75.4411 6.05871,-75.45776 6.01292,-75.46209 6.0046,-75.46948 5.99041,-75.48496 5.97728,-75.49372 5.979,-75.50747 5.96602,-75.50747 5.96602,-75.49949 5.94539,-75.48074 5.93648,-75.47464 5.94398,-75.44744 5.93366,-75.41461 5.93648,-75.40898 5.94304,-75.41883 5.97822,-75.39903 5.99701,-75.39112 5.99724,-75.37897 6.00307,-75.37053 6.01339,-75.36537 6.01901,-75.36021 6.03261,-75.36725 6.03777,-75.36631 6.04528,-75.37053 6.06028,-75.38225 6.06544,-75.39538 6.06638,-75.40711 6.06122,-75.42493 6.06732,-75.439 6.06404,-75.439 6.06404,-75.439 6.06404))"
 ]
}

 The dataset includes 38717 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005407-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cwaj6s
title: Occurrence Download

description: A dataset containing 47430 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-02-07",
 "EventDate is less than or equal to 2025-03-09",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 47430 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005446-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t2wpch
title: Occurrence Download

description: A dataset containing 325 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Glaucomys volans (Linnaeus, 1758)"
 ]
}

 The dataset includes 325 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005448-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14966350
title: Dataset for biomechanics of punching - effective mass analysis

description: Dataset for Biomechanics of Punching - Effective Mass Analysis

This dataset contains biomechanical measurements related to different punching techniques in boxing. It includes raw sensor data, processed summary statistics, and analysis scripts. The data were collected to investigate the relationship between force transfer, impulse, and effective mass in trained boxers.

#### **Included Files**

- `total.xlsx` - summary dataset with key biomechanical variables.

- Raw data files (`01 jab.xlsx`, `02 cross.xlsx`, etc.) - high-frequency sensor recordings. 

- Jupyter notebooks (`butterworth filtered.ipynb`, `Impulse force.ipynb`) - scripts for filtering and analyzing punch events.

- `README.md` - detailed instructions on using the dataset.

#### **Usage**

Researchers can use this dataset for: 

- Biomechanical analysis of punching efficiency.

- Sports science studies on kinetic chain dynamics.

- Machine learning models for impact force prediction.

#### **License**

This dataset is provided under the **CC-BY 4.0** license. Please cite as:

Kacprzak, J.; Mosler, D.; Wąsik, J. (2024). Dataset for Biomechanics of Punching - Effective Mass Analysis. Zenodo. DOI: [10.5281/zenodo.14966351]
DOI: 10.5281/zenodo.14966351
title: Dataset for biomechanics of punching - effective mass analysis

description: Dataset for Biomechanics of Punching - Effective Mass Analysis

This dataset contains biomechanical measurements related to different punching techniques in boxing. It includes raw sensor data, processed summary statistics, and analysis scripts. The data were collected to investigate the relationship between force transfer, impulse, and effective mass in trained boxers.

#### **Included Files**

- `total.xlsx` - summary dataset with key biomechanical variables.

- Raw data files (`01 jab.xlsx`, `02 cross.xlsx`, etc.) - high-frequency sensor recordings. 

- Jupyter notebooks (`butterworth filtered.ipynb`, `Impulse force.ipynb`) - scripts for filtering and analyzing punch events.

- `README.md` - detailed instructions on using the dataset.

#### **Usage**

Researchers can use this dataset for: 

- Biomechanical analysis of punching efficiency.

- Sports science studies on kinetic chain dynamics.

- Machine learning models for impact force prediction.

#### **License**

This dataset is provided under the **CC-BY 4.0** license. Please cite as:

Kacprzak, J.; Mosler, D.; Wąsik, J. (2024). Dataset for Biomechanics of Punching - Effective Mass Analysis. Zenodo. DOI: [10.5281/zenodo.14966351]
DOI: 10.15468/dl.kv7ec2
title: Occurrence Download

description: A dataset containing 356 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is one of (Brazil, Argentina, Paraguay)",
 "TaxonKey is Anous stolidus (Linnaeus, 1758)",
 "Year 1000-2024"
 ]
}

 The dataset includes 356 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005450-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.btxpgw
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Desmopsis subnuda (R.E.Fr.) G.E.Schatz & Maas"
 ]
}

 The dataset includes 15 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005451-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nbe9wp
title: Occurrence Download

description: A dataset containing 29165 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Echinus esculentus Linnaeus, 1758"
 ]
}

 The dataset includes 29165 records from 156 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005411-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14968024
title: Unit square meshes
DOI: 10.5281/zenodo.14968025
title: Unit square meshes
DOI: 10.15468/dl.xh9xk6
title: Occurrence Download

description: A dataset containing 1254 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((-170 5,-50 5,-50 83,-170 83,-170 5))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Asclepias sullivantii Engelm. ex A.Gray"
 ]
}

 The dataset includes 1254 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005452-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tnjhfv
title: Occurrence Download

description: A dataset containing 21525 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heteromeles arbutifolia (Lindl.) M.Roem.",
 "CoordinateUncertaintyInMeters is less than 500"
 ]
}

 The dataset includes 21525 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005412-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00005348.0
title: Available datapackage for study 'A 10 Month Open-Label Evaluation Of The Long-Term Safety Of DVS-233 SR In Outpatients With Major Depressive Disorder.'

description: The study evaluated the long-term safety of Desvenlafaxine Succinate (DVS) Slow Release (SR) during open-label treatment in adult outpatients who had a primary diagnosis of major depressive disorder (MDD). The study also evaluated the long-term response of subjects receiving DVS SR for clinical global evaluation, functionality, general well-being, pain, and absence of depressive symptoms (remission).
DOI: 10.60520/ieda/113512
title: Sr-Nd-Hf, major and trace element compositions of cratonic lamproites

description: Here, we present new Sr-Nd-Hf isotopic, major, and trace element compositions for 61 fresh lamproite samples with ages ranging between 2 Ga and the Quaternary, and compare these results with existing data for cratonic lamproites worldwide. We then use the combined data-set to re-evaluate the origin of cratonic lamproites on a global scale.
description: Sarkar, S., Dalton, H., Giuliani, A., Phillips, D., Graham Pearson, D., Nowell, G. M., Woodhead, J. D., Hergt, J., Maas, R., Lynton Jaques, A., Chalapathi Rao, N. V., Weiss, Y., & Ghosh, S. (2025). Extreme enriched-mantle (EM) compositions recorded by the Sr-Nd-Hf isotopes of global cratonic lamproites. Geochimica et Cosmochimica Acta.
DOI: 10.6084/m9.figshare.28202699
title: profile HMMs, alignments, and phylogenetic trees

description: Folder "HMMs" contains profile HMMs used for HMMER searches of proteins of membrane-trafficking system (MTS) in diplonemids.Folder "diplonemids_trees" contains full (xxx.mafft.aln) and trimmed (xxx.trimal.aln) alignments and tree files in Newick format (xxx.mb+raxml.tre) for phylogenetic analyses of diplonemid MTS proteins.Folder "mantamonas_tree" contains full (xxx.mafft.aln) and trimmed (xxx.trimal.aln) alignments and tree files in Newick format for phylogenetic analyses (xxx.mb+raxml.tre) of <i>Mantamonas</i> MTS proteins.<br>
DOI: 10.6084/m9.figshare.28202699.v2
title: profile HMMs, alignments, and phylogenetic trees

description: Folder "HMMs" contains used for HMMER searches of proteins of membrane-trafficking system (MTS).Folder "diplonemids_trees" contains full (xxx.mafft.aln) and trimmed (xxx.trimal.aln) alignments and tree files in Newick format (xxx.mb+raxml.tre) for phylogenetic analyses of diplonemid MTS proteins.Folder "mantamonas_tree" contains full (xxx.mafft.aln) and trimmed (xxx.trimal.aln) alignments and tree files in Newick format for phylogenetic analyses (xxx.mb+raxml.tre) of <i>Mantamonas</i> MTS proteins.
DOI: 10.15468/dl.nf5uf2
title: Occurrence Download

description: A dataset containing 51088 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Amazona albifrons (Sparrman, 1788)",
 "Year 2000-2025"
 ]
}

 The dataset includes 51088 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005384-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ugtva
title: Occurrence Download

description: A dataset containing 9033 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 9033 records from 284 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005414-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/v08w23
title: S3_S4_S5_reusable_data.tab

description: S3_S4_S5_reusable_data
DOI: 10.57745/2mfv7c
title: Supplemental_Table_S2.tab

description: Supplemental Table S2
DOI: 10.57745/eyqf9y
title: Supplemental_Table_S5.tab

description: Supplemental Table S5
DOI: 10.57745/rzmg4u
title: Supplemental_Table_S1.xlsx

description: Supplemental Table S1
DOI: 10.5281/zenodo.14961584
title: Minimal dataset for "Tomei, Studer, and Gmel (2025). Perceived social support according to the type and number of addictions. Submitted to PLOS One".

description: The dataset includes the minimal data and variable description to reproduce the results reported in "Tomei, Studer, and Gmel (2025). Perceived social support according to the type and number of addictions. Submitted to PLOS One". Please note that variable "Add_type" includes values from repondents with a single addiction. As a consequence, the missing data for "Add_type" correspond to participants with multiple addictions.

The study was supported by the Swiss National Science Foundation (SNSF; Grants FN 33CSC0-122679, and FN 33CS30_139467). It was approved by Lausanne University Medical School’s Clinical Research Ethics Committee (protocol number 15/07).
DOI: 10.5281/zenodo.14961585
title: Minimal dataset for "Tomei, Studer, and Gmel (2025). Perceived social support according to the type and number of addictions. Submitted to PLOS One".

description: The dataset includes the minimal data and variable description to reproduce the results reported in "Tomei, Studer, and Gmel (2025). Perceived social support according to the type and number of addictions. Submitted to PLOS One". Please note that variable "Add_type" includes values from repondents with a single addiction. As a consequence, the missing data for "Add_type" correspond to participants with multiple addictions.

The study was supported by the Swiss National Science Foundation (SNSF; Grants FN 33CSC0-122679, and FN 33CS30_139467). It was approved by Lausanne University Medical School’s Clinical Research Ethics Committee (protocol number 15/07).
DOI: 10.5281/zenodo.14514499
title: Timeseries and novelty assessment for Open Targets Platform

description: First data release with timestamp annotations for biomedical evidence in the Open Targets Platform (23.06) and a novelty score for target-disease associations. Timestamps include the primary source date, curation date or project date of the evidence. The evolution over the years of source-specific association scores, overall association scores and novelty scores are calculated for each year based on the accumulated timestamped evidence. Direct evidence was propagated through the disease ontology to obtain indirect evidence files. The files are in parquet format. For more details, read Falaguera et al. preprint "Temporal trends in novel drug target discovery reveal the increasing importance of human genetic data" or visit https://github.com/opentargets/timeseries/. Files provided here are:

evidenceDated: Biomedical evidence annotated with their timestamps, including primary source date, curation date or project date.

associationByDatasourceIndirectOverYears: Evolution of source-specific target-disease association scores and novelty over the years based on timestamped evidence (after ontolgy propagation).

associationByOverallIndirectOverYears: Evolution of overall target-disease association scores and novelty over the years based on timestamped evidence (after ontolgy propagation).
DOI: 10.5281/zenodo.14968088
title: Timeseries and novelty assessment for Open Targets Platform

description: First data release with timestamp annotations for biomedical evidence in the Open Targets Platform (23.06) and a novelty score for target-disease associations. Timestamps include the primary source date, curation date or project date of the evidence. The evolution over the years of source-specific association scores, overall association scores and novelty scores are calculated for each year based on the accumulated timestamped evidence. Direct evidence was propagated through the disease ontology to obtain indirect evidence files. The files are in parquet format. For more details, read Falaguera et al. preprint "Temporal trends in novel drug target discovery reveal the increasing importance of human genetic data" or visit https://github.com/opentargets/timeseries/. Files provided here are:

evidenceDated: Biomedical evidence annotated with their timestamps, including primary source date, curation date or project date.

associationByDatasourceIndirectOverYears: Evolution of source-specific target-disease association scores and novelty over the years based on timestamped evidence (after ontolgy propagation).

associationByOverallIndirectOverYears: Evolution of overall target-disease association scores and novelty over the years based on timestamped evidence (after ontolgy propagation).

associationsWithNoveltyPeak2023.csv: Target-Disease associations with novelty peaks equal or greater than 0.4 in 2023.
DOI: 10.17632/5v3nbxb65y.1
title: XPS raw data of samples during simulated acid bioleaching of chalcopyrite as part of a column leaching study

description: This dataset consists of two time series of XPS measurements performed on two chalcopyrite samples during simulated acid bioleaching. These measurements were obtained as part of a column leaching study where the focus was placed in tracking spatiotemporal surface-level changes. Each file corresponds to a specific particle located at a different location within the column system, and at a different time from the start of the leaching period. Each file contains the XPS measurements for a survey scan and from high-resolution scans performed in the O 1s, C1s, K2p, Cu2p, Fe2p, and S2p regions.

The interpretation of this data will be included in a future scientific publication. This entry will be updated with access information in the future.
DOI: 10.6073/pasta/42566295c4f6a13ff35246ac491c30c2
title: Jornada Basin LTER: Wireless meteorological station at NPP G-IBPE site: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily average of 30-minute Volumetric Water Content at NPP G-IBPE met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured and calculated at an automated meteorological station installed at Jornada LTER NPP G-IBPE site. The daily average at 3 soil depths is calculated from measurements made every 30 minutes at 10 cm, 20 cm, and 30 cm. This is an ONGOING dataset.
DOI: 10.17632/5v3nbxb65y.2
title: XPS raw data of samples undergoing simulated acid bioleaching of chalcopyrite as part of a column leaching study

description: This dataset consists of two time series of XPS measurements performed on two chalcopyrite samples during simulated acid bioleaching. These measurements were obtained as part of a column leaching study where the focus was placed in tracking spatiotemporal surface-level changes. Each file corresponds to a specific particle located at a different location within the column system, and at a different time from the start of the leaching period. Each file contains the XPS measurements for a survey scan and from high-resolution scans performed in the O1s, C1s, K2p, Cu2p, Fe2p, and S2p regions.

The interpretation of this data will be included in a future scientific publication. This entry will be updated with access information in the future.
DOI: 10.15468/dl.wjr4pe
title: Occurrence Download

description: A dataset containing 555 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Leopardus wiedii (Schinz, 1821)"
 ]
}

 The dataset includes 555 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005453-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5rcapg
title: Occurrence Download

description: A dataset containing 148300 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Trifolium pratense L.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 148300 records from 478 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005403-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u8cadn
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Achyranthes aspera",
 "HasCoordinate is true",
 "Country is Namibia"
 ]
}

 The dataset includes 39 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048951-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57841/casdc.0005802
title: 中国地面旬值数据集