cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0175280.10fu
title: SH0175280.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0175281.10fu
title: SH0175281.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0175282.10fu
title: SH0175282.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.4qcgrw
title: Occurrence Download

description: A dataset containing 4783 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lagarosiphon major (Ridl.) Moss, Lagarosiphon muscoides var. major Ridl., Elodea crispa, Lagarosiphon major (Ridl.) Moss ex V.A.Wager)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 4783 records from 224 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010038-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g2zdk6
title: Occurrence Download

description: A dataset containing 34875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Caretta caretta (Linnaeus, 1758)",
 "Year 2014-2025"
 ]
}

 The dataset includes 34875 records from 243 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010040-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22008/fk2/2jlncm/ezfay2
title: grl_ne_placenames.zip

description: :unav
DOI: 10.5281/zenodo.14794020
title: Functional analysis of direct in vitro effect of phosphorylated tau on mitochondrial respiration and hydrogen peroxide production

description: Abstract: Neurotoxicity of phosphorylated tau protein (P-tau) and mitochondrial dysfunction play a significant role in the pathophysiology of Alzheimer's disease (AD). In vitro studies of the effects of P-tau oligomers on mitochondrial bioenergetics and reactive oxygen species production will allow us to evaluate the direct influence of P-tau on mitochondrial function. We measured the in vitro effect of P-tau oligomers on oxygen consumption and hydrogen peroxide production in isolated brain mitochondria. An appropriate combination of specific substrates and inhibitors of the phosphorylation pathway enabled the measurement and functional analysis of the effect of P-tau on mitochondrial respiration in defined coupling control states achieved in complex I-, II-, and I&II-linked electron transfer pathways. At submicromolar P-tau concentrations, we found no significant effect of P-tau on either mitochondrial respiration or hydrogen peroxide production in different respiratory states. Titration of P-tau showed a nonsignificant dose dependent decrease in hydrogen peroxide production for complex I- and I&II-linked pathways. Little direct in vitro effect of P-tau oligomers on both mitochondrial respiration and hydrogen peroxide production indicates that P-tau-induced mitochondrial dysfunction in AD is not due to direct effects of P-tau on the efficiency of the electron transport chain and on the production of reactive oxygen species.
DOI: 10.5281/zenodo.14794021
title: Functional analysis of direct in vitro effect of phosphorylated tau on mitochondrial respiration and hydrogen peroxide production

description: Abstract: Neurotoxicity of phosphorylated tau protein (P-tau) and mitochondrial dysfunction play a significant role in the pathophysiology of Alzheimer's disease (AD). In vitro studies of the effects of P-tau oligomers on mitochondrial bioenergetics and reactive oxygen species production will allow us to evaluate the direct influence of P-tau on mitochondrial function. We measured the in vitro effect of P-tau oligomers on oxygen consumption and hydrogen peroxide production in isolated brain mitochondria. An appropriate combination of specific substrates and inhibitors of the phosphorylation pathway enabled the measurement and functional analysis of the effect of P-tau on mitochondrial respiration in defined coupling control states achieved in complex I-, II-, and I&II-linked electron transfer pathways. At submicromolar P-tau concentrations, we found no significant effect of P-tau on either mitochondrial respiration or hydrogen peroxide production in different respiratory states. Titration of P-tau showed a nonsignificant dose dependent decrease in hydrogen peroxide production for complex I- and I&II-linked pathways. Little direct in vitro effect of P-tau oligomers on both mitochondrial respiration and hydrogen peroxide production indicates that P-tau-induced mitochondrial dysfunction in AD is not due to direct effects of P-tau on the efficiency of the electron transport chain and on the production of reactive oxygen species.
DOI: 10.15468/dl.9z2uba
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lampranthus emarginatoides (Haw.) N.E.Br., Mesembryanthemum retroflexum Haw., Mesembryanthemum emarginatoides Haw.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 76 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010041-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7682903
title: Isoprenoid gene network in Arabidopsis thaliana

description: To gain more insight into the cross-talk between both pathways at the transcriptional level, gene-expression patterns were monitored under various experimental conditions using 118 GeneChip (Affymetrix) microarrays. To construct a genetic regulatory network in Wille et al. (2004), the interventional dataset focusses on 40 genes, 16 of which were assigned to the cytosolic pathway, 19 to the plastidal pathway and five encode proteins located in the mitochondrion.

 

Task: The dataset can be used to study causal discovery algorithms.

 

Summary: 



Size of dataset: 118 x 41

Task: Causal Discovery

Data Type: Continuous

Dataset Scope: Standalone

Ground Truth: Known

Temporal Structure: Static

License:  CC BY 2.0 (see https://genomebiology.biomedcentral.com/articles/10.1186/gb-2004-5-11-r92#MOESM1)

Missing Values: No


 

Missingness Statement: There are no missing values.

 

Samples:

Experimental procedures involved seedlings, leaves and roots. For experiments involving seedlings or leaves, plants were grown in growth chambers at 70% humidity and daily cycles of 16 h light at 21◦C and 8 h darkness at 21◦C. Plant material from three independent experiments (replications not in parallel) for each experiment group respectively was pooled prior to RNA extraction. The 118 different experimental conditions are denoted by c1-c118:



c1-c2: Experiment with wild-type and era mutant seedlings. (growth stage 1.0; tissue: whole seedlings)

c3-c5: Arabidopsis tissue culture, leaf and seedling in a baseline experiment (growth stage: - ; tissue: tissue culture, seedling, adult leaf).

c6-c14: RNA was extracted from seedlings and adult leaves of wild-type and prenylation mutant plants grown under standard conditions (growth stage 1.0; tissue: whole seedlings and adult leaves).

c15-c22: RNA was extracted from wild-type and several transgenic seedlings (growth stage: 1.0; tissue: whole seedlings).

c23-c30: RNA was extracted from a root inducible system  exposed to hormonal treatments. (growth stage: 1.0; tissue: lateral roots).

c31-c56: Arabidopsis seedlings were exposed to light and dark conditions in a time-course experiment (0, 10 min, 1h, 5h, 2d, 5d). (growth stage: 1.0; tissue: whole seedlings).

c70-c92: Experiment to assess the effect of inhibitors of the MVA pathway (lovastatin) and the MVA-independent pathway (fosmidomycin) on the expression of genes involved in isoprenoid biosynthesis. (growth stage: 1.0 and 3.90; tissues: whole seedlings and adult leaves).

c93-c118: Arabidopsis seedlings and adult leaves were exposed to ozone for several periods of time. (growth stage: 1.0 and 3.90; tissues: whole seedlings, cauline leaves and adult leaves).


 

Features: 



c[...]: This column indicates the experiment as descried above



AACT1, AACT2, CMK, DPPS1, ...: Gene expressions level. The column names indicate the gene name.





 

Note: Although the gene UPPS2 was analyzed in Willie et al. (2004), it is not provided in its supporting material and in this dataset.
DOI: 10.48597/yu8f-bthx
title: Measurement of POPs (persistent organic pollutants) at Pallas (Matorova)

description: Measurement of POPs (persistent organic pollutants) at Pallas (Matorova)
DOI: 10.15468/dl.vgzxhp
title: Occurrence Download

description: A dataset containing 60425 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Specimen)",
 "Continent is one of (North America, South America)",
 "DatasetKey is one of (iNaturalist Research-grade Observations, Fauna registrada mediante cámaras trampa en el marco del proyecto Expedición del Oso Palmero en el departamento del Casanare, Données du Parc amazonien de Guyane - Données sur la chasse Parc amazonien de Guyane 2010-2012, Fauna y flora del Distrito Nacional de Manejo Integrado Cinaruco en el año 2021, Registros de fauna marino-costera y terrestre encontrados en el golfo de Urabá, Observation.org, Nature data from around the World, NABU|naturgucker, Monitoreo pasivo de fauna silvestre con cámaras trampa en el Magdalena Medio, Santander y Cesar, Colombia - Proyecto FIBRAS, CM Herps Collection, Vertebrate Zoology Division - Herpetology, Yale Peabody Museum)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Alligatoridae",
 "Year is greater than or equal to 1990"
 ]
}

 The dataset includes 60425 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010042-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v965ds
title: Occurrence Download

description: A dataset containing 25136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lemna minuta Kunth, Lemna valdiviana var. minima Hegelm., Lemna minima Chev., Lemna minima Philippi, Lemna abbreviata Hglm., Lemna minuscula Herter, Lemna valdiviana var. abbreviata Hegelm., Lemna minima (Hegelm.) Phil. ex Hegelm., Lemna valdiviana (Hegelm.) C.H.Thomps., Lemna abbreviata (Hegelm.) Hegelm.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 25136 records from 528 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010043-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d8f2j9
title: Occurrence Download

description: A dataset containing 2360 records in GBIF matching the query:
Select 'year', GBIF_EEARGCode(1000, decimalLatitude, decimalLongitude, COALESCE(coordinateUncertaintyInMeters, 1000)) AS eeaCellCode ,speciesKey species, establishmentMeans, degreeOfEstablishment, pathway, COUNT(*) AS occurrences, COUNT(DISTINCT recordedBy) AS distinctObservers FROM occurrence WHERE countryCode = 'BE' AND occurrenceStatus = 'PRESENT' AND hasCoordinate = TRUE AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID') AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') AND 'year' IS NOT NULL AND taxonKey in ( 8190643,2688345,2688393,2688369,2688434 ) GROUP BY 'year', eeaCellCode, speciesKey, species, establishmentMeans, degreeOfEstablishment, pathway ORDER BY 'year' DESC, eeaCellCode ASC, speciesKey ASC

 The dataset's 2360 records were derived from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010031-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hep9ct
title: Occurrence Download

description: A dataset containing 1559 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tremarctos ornatus (F.G.Cuvier, 1825)"
 ]
}

 The dataset includes 1559 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010045-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nxkta8
title: Occurrence Download

description: A dataset containing 709 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amyris balsamifera L."
 ]
}

 The dataset includes 709 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010046-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.htb26w
title: Occurrence Download

description: A dataset containing 288 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lepidium virginicum subsp. virginicum, Lepidium virginicum var. virginicum, Lepidium virginicum var. typicum Thell., Lepidium virginicum subsp. euvirginicum Thell., Lepidium virginicum var. kashmiricum Dar & Naqshi, Lepidium virginicum var. canescens Thell., Lepidium virginicum var. linearifolium Farw., Lepidium virginicum var. durangense C.L.Hitchc., Lepidium gerloffianum var. microcarpum Thell., Lepidium virginicum f. pusillum C.L.Hitchc., Lepidium horstii Johow, Clypeola caroliniana Walter, Nasturtium diandrum Moench, Semetum ramosum Raf., Lepidium virginicum var. kashmirianum Dar & Kachroo, Dileptium diffusum Raf., Cynocardamum virginicum Webb & Berthel., Lepidium virginicum var. pavonianum Thell., Lepidium virginicum var. typicum C.L.Hitchc., Lepidium arcuatum DC., Lepidium virginicum var. ramosum Thell., Lepidium virginicum var. macropetalum Thell., Lepidium gerloffianum Vatke ex Gilg & Muschl., Lepidium micropterum Miq., Lepidium exiguiflorum Clairv., Lepidium virginicum var. tepicense C.L.Hitchc., Dileptium precox Raf., Thlaspi virginianum Poir.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 288 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010047-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14792543
title: Data from "A Metatranscriptomic Study of the Gut Microbiota Profile in Parkinson's Disease Patients", Ilie et al. 2025

description: Dataset containing raw demultiplexed FASTQ files of the sequenced samples, generated by the Illumina MiSeq platform. 

MiSeq_demultiplexed-V3_V4-HC_PD.zip - MiSeq raw sequences of the V3-V4 region 16S rRNA gene from subject fecal material. This ZIP file contains the FASTQ files of the paired-end reads (R1: forward reads; R2: reverse reads) produced for each sample using the MiSeq platform.

metadata-HC_PD.csv - The list of sequenced samples and associated metadata.
DOI: 10.15468/dl.jx6q9v
title: Occurrence Download

description: A dataset containing 294 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Heliopais personatus (G.R.Gray, 1849)"
 ]
}

 The dataset includes 294 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010048-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8kzxee
title: Occurrence Download

description: A dataset containing 2822 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-1.11534 41.5523,-1.00327 41.5523,-1.00327 41.61768,-1.11534 41.61768,-1.11534 41.5523))"
 ]
}

 The dataset includes 2822 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010050-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.57py9b
title: Occurrence Download

description: A dataset containing 97307 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Ardeotis nigriceps (Vigors, 1831), Chlamydotis macqueenii (J.E.Gray, 1832), Houbaropsis bengalensis (Müller & Pls, 1776), Sypheotides indicus (J.F.Miller, 1782), Tetrax tetrax (Linnaeus, 1758))"
 ]
}

 The dataset includes 97307 records from 418 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010044-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.alpcc6
title: Occurrence Download

description: A dataset containing 172 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Poecilia caucana (Steindachner, 1880)",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-80.05 4.00,-80.05 21.05,-52.49 21.05,-52.49 4.00,-80.05 4.00))"
 ]
}

 The dataset includes 172 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008204-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b6mzxd
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus crispifolia Trel."
 ]
}

 The dataset includes 75 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042205-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g5v2x7
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Indigofera lotononoides Baker f."
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032197-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dbh8em
title: Occurrence Download

description: A dataset containing 1312 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 6) Distribution of live benthic foraminifera in deep-sea surface sediments of the Scotia Sea, part 1"
 ]
}

 The dataset includes 1312 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008204-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a932v4
title: Occurrence Download

description: A dataset containing 1852 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jacquemontia paniculata (Burm.fil.) Hallier fil."
 ]
}

 The dataset includes 1852 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032223-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yft6u5
title: Occurrence Download

description: A dataset containing 148 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astyanax altior Hubbs, 1936"
 ]
}

 The dataset includes 148 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016211-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.