DOI: 10.5281/zenodo.11094340
title: Relevant loci from genomic assembly, gene model, and interproscan annotation, for PKZILLA-B1 from B-type P. parvum strain RCC3426

description: Version 1.0 of the Prymnesium parvum RCC3426 PKZILLA-B1 gene annotation (PKZILLA-B1.gff)

Version 1.0 of the P. parvum RCC3426 gene annotation (PKZILLA-B1.gff), consisting of expert guided ab initio gene prediction of just the PKZILLA-B1 gene model on its selected loci from the draft RCC3426 genome assembly. Interproscan annotations of PKS domains are also included (see interproscan-parallel.zip)

See the manuscript "Materials and Methods" section for full details.

seqkit stat statistics:

file                                                                          format  type     num_seqs  sum_len  min_len  avg_len  max_len./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.gene.fa.gz       FASTA   DNA             1  118,049  118,049  118,049  118,049./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.mRNA.fa.gz       FASTA   DNA             1  116,940  116,940  116,940  116,940./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.pep.fa.gz        FASTA   Protein         1   38,980   38,980   38,980   38,980./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.CDS.fa.gz        FASTA   DNA             1  116,940  116,940  116,940  116,940./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indCDSnt.fa.gz   FASTA   DNA            16  116,940    1,140  7,308.8   14,895./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indCDSpep.fa.gz  FASTA   Protein        16   38,980      380  2,436.3    4,965./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indExon.fa.gz    FASTA   DNA            16  116,940    1,140  7,308.8   14,895./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indIntron.fa.gz  FASTA   DNA            30    2,218       63     73.9      101

seqkit sum checksums:

seqkit.v0.1_DLS_k0_48447ccbb39a48a389fc726e3647a9a4     ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.CDS.fa.gzseqkit.v0.1_DLS_k0_1366665c674b96f4e302f8afab53fa4e     ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.gene.fa.gzseqkit.v0.1_DLS_k0_101122a59afec1b41ca7f9d1a4186b52     ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indCDSnt.fa.gzseqkit.v0.1_PLS_k0_404d6657b58d22da550585c3bfa06f8d     ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indCDSpep.fa.gzseqkit.v0.1_DLS_k0_101122a59afec1b41ca7f9d1a4186b52     ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indExon.fa.gzseqkit.v0.1_DLS_k0_af7f0b217bd14bf6dff5dbca157c5cbb     ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indIntron.fa.gzseqkit.v0.1_DLS_k0_48447ccbb39a48a389fc726e3647a9a4     ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.mRNA.fa.gzseqkit.v0.1_PLS_k0_9f280bb95c4ee9afe7a1f28975de338d     ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.pep.fa.gz

seqkit sum -g checksums:

seqkit.v0.1_DLS_k0_48447ccbb39a48a389fc726e3647a9a4     ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.CDS.fa.gzseqkit.v0.1_DLS_k0_1366665c674b96f4e302f8afab53fa4e     ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.gene.fa.gzseqkit.v0.1_DLS_k0_101122a59afec1b41ca7f9d1a4186b52     ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indCDSnt.fa.gzseqkit.v0.1_PLS_k0_fced14c2e2e98c5464f20ac91aab1bde     ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indCDSpep.fa.gzseqkit.v0.1_DLS_k0_101122a59afec1b41ca7f9d1a4186b52     ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indExon.fa.gzseqkit.v0.1_DLS_k0_af7f0b217bd14bf6dff5dbca157c5cbb     ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indIntron.fa.gzseqkit.v0.1_DLS_k0_48447ccbb39a48a389fc726e3647a9a4     ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.mRNA.fa.gzseqkit.v0.1_PLS_k0_8eb393988e68fdfa1fe5a435eefe353b     ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.pep.fa.gz

openssl md5 checksums:

MD5(./PKZILLA-B1.gff)= b7389f45965e2b078597ceeaa2ad4d67MD5(./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.CDS.fa.gz)= 7f576dbd61bd60ba1955ce46b5077e85MD5(./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.gene.fa.gz)= 7dcae701dea30fbfa4508c0f01438168MD5(./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indCDSnt.fa.gz)= 0fae261356f4a20629d20fccaad00d1cMD5(./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indCDSpep.fa.gz)= d0081800e314b9f99c0fa759d4e80187MD5(./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indExon.fa.gz)= 79b6b942b61fcab1f14682f38e80cf41MD5(./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indIntron.fa.gz)= c2055a64ebcf332c7c6bb28c57762c94MD5(./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.mRNA.fa.gz)= 7f576dbd61bd60ba1955ce46b5077e85MD5(./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.pep.fa.gz)= 2f01d8cf130b343076e1d9197e6041ab

MD5(./interproscan-parallel.zip)= 595ec69a0d77e8c96c7aa29ea913532b