cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5745420
title: Additional file 1: Figure S1. of mTOR inhibition improves the immunomodulatory properties of human bone marrow mesenchymal stem cells by inducing COX-2 and PGE2

description: mTOR inhibition has no effect on induction regulatory T cells of MSCs. MSCs were pretreated with or without rapamycin for 4 h and cocultured with human CD4 T cells for 5 days; the proportion of CD4+CD25hiCD127– cells was analyzed by flow cytometry (A, representative data; B, pooled data). Data represent mean ± SD of four independent experiments. **p &lt; 0.01. N.S. not significant. Figure S2. Knockdown of TSC1 has no effect on immunomodulatory functions of MSCs. (A) MSCs were infected with lentivirus carrying scrambled shRNA (shNC) or TSC1-specific shRNAs (shTSC1_1, shTSC1_2); TSC1 knockdown efficiency was assessed by quantitative RT-PCR. (B) MSCs with or without TSC1 knockdown were cocultured with PBMCs at the indicated ratio; flow cytometry showed the PBMC proliferation after 5 days. Data represent mean ± SD of three independent experiments. **p &lt; 0.01. N.S. not significant. Figure S3. mTOR inhibition in MSCs does not influence the expression of inflammatory cytokine receptors. MSCs were pretreated with 10 nM or 100 nM rapamycin for 4 h; IFN-γ and TNF-α receptor IFNGR1, IFNGR2, TNFR1, TNFR2 mRNA expression was measured by quantitative RT-PCR at the indicated time. Cells without pretreatment with rapamycin were indicated as control. Data represent mean ± SD of three independent experiments. Figure S4. Knockdown of TSC2 does not show an obvious difference in expression of COX-2. (A) MSCs with or without TSC2 knockdown were treated with 10 ng/ml TNF-α plus 20 ng/ml IFN-γ for 24 h. COX-2 mRNA expression was measured by quantitative RT-PCR. (B) MSCs with or without TSC2 knockdown were treated with 10 ng/ml TNF-α plus 20 ng/ml IFN-γ for 8 h. The protein level of COX-2 was measured by Western blot. Data represent mean ± SD of three independent experiments. N.S. not significant. Table S1. Primer sequences used for real-time PCR. (ZIP 13342 kb)
DOI: 10.6084/m9.figshare.5745420.v1
title: Additional file 1: Figure S1. of mTOR inhibition improves the immunomodulatory properties of human bone marrow mesenchymal stem cells by inducing COX-2 and PGE2

description: mTOR inhibition has no effect on induction regulatory T cells of MSCs. MSCs were pretreated with or without rapamycin for 4 h and cocultured with human CD4 T cells for 5 days; the proportion of CD4+CD25hiCD127– cells was analyzed by flow cytometry (A, representative data; B, pooled data). Data represent mean ± SD of four independent experiments. **p &lt; 0.01. N.S. not significant. Figure S2. Knockdown of TSC1 has no effect on immunomodulatory functions of MSCs. (A) MSCs were infected with lentivirus carrying scrambled shRNA (shNC) or TSC1-specific shRNAs (shTSC1_1, shTSC1_2); TSC1 knockdown efficiency was assessed by quantitative RT-PCR. (B) MSCs with or without TSC1 knockdown were cocultured with PBMCs at the indicated ratio; flow cytometry showed the PBMC proliferation after 5 days. Data represent mean ± SD of three independent experiments. **p &lt; 0.01. N.S. not significant. Figure S3. mTOR inhibition in MSCs does not influence the expression of inflammatory cytokine receptors. MSCs were pretreated with 10 nM or 100 nM rapamycin for 4 h; IFN-γ and TNF-α receptor IFNGR1, IFNGR2, TNFR1, TNFR2 mRNA expression was measured by quantitative RT-PCR at the indicated time. Cells without pretreatment with rapamycin were indicated as control. Data represent mean ± SD of three independent experiments. Figure S4. Knockdown of TSC2 does not show an obvious difference in expression of COX-2. (A) MSCs with or without TSC2 knockdown were treated with 10 ng/ml TNF-α plus 20 ng/ml IFN-γ for 24 h. COX-2 mRNA expression was measured by quantitative RT-PCR. (B) MSCs with or without TSC2 knockdown were treated with 10 ng/ml TNF-α plus 20 ng/ml IFN-γ for 8 h. The protein level of COX-2 was measured by Western blot. Data represent mean ± SD of three independent experiments. N.S. not significant. Table S1. Primer sequences used for real-time PCR. (ZIP 13342 kb)
DOI: 10.6084/m9.figshare.5745441
title: Additional file 6: Table S2. of Cold-responsive miRNAs and their target genes in the wild eggplant species Solanum aculeatissimum

description: Targets of conserved miRNAs from eggplant. Chi-square test and fisher-exact test results were both &lt;0.05 and | log2 (CT/NT) | ≥ 1. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.5745441.v1
title: Additional file 6: Table S2. of Cold-responsive miRNAs and their target genes in the wild eggplant species Solanum aculeatissimum

description: Targets of conserved miRNAs from eggplant. Chi-square test and fisher-exact test results were both &lt;0.05 and | log2 (CT/NT) | ≥ 1. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.5745444
title: Additional file 7: Table S3. of Cold-responsive miRNAs and their target genes in the wild eggplant species Solanum aculeatissimum

description: Analysis of nine miRNAs and their genes differential expression. Chi-square test and fisher-exact test results were both &lt;0.05 and | log2 (CT/NT) | ≥ 1. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.5745444.v1
title: Additional file 7: Table S3. of Cold-responsive miRNAs and their target genes in the wild eggplant species Solanum aculeatissimum

description: Analysis of nine miRNAs and their genes differential expression. Chi-square test and fisher-exact test results were both &lt;0.05 and | log2 (CT/NT) | ≥ 1. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.5745447
title: Additional file 8: Table S4. of Cold-responsive miRNAs and their target genes in the wild eggplant species Solanum aculeatissimum

description: Sequences of primers used for stem-loop qRT-PCR analysis. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.5745447.v1
title: Additional file 8: Table S4. of Cold-responsive miRNAs and their target genes in the wild eggplant species Solanum aculeatissimum

description: Sequences of primers used for stem-loop qRT-PCR analysis. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.5745450
title: Additional file 9: Table S5. of Cold-responsive miRNAs and their target genes in the wild eggplant species Solanum aculeatissimum

description: Functional analysis of miRNA and target genes in eggplant. GO enrichment analysis of the functions of target genes cleaved by conserved miRNAs. KEGG pathway analysis of target genes of conserved miRNAs in different time periods. (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.5745450.v1
title: Additional file 9: Table S5. of Cold-responsive miRNAs and their target genes in the wild eggplant species Solanum aculeatissimum

description: Functional analysis of miRNA and target genes in eggplant. GO enrichment analysis of the functions of target genes cleaved by conserved miRNAs. KEGG pathway analysis of target genes of conserved miRNAs in different time periods. (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.5746068
title: Table S1.docx

description: Table S1: The primers used in this study.
DOI: 10.6084/m9.figshare.5746068.v1
title: Table S1.docx

description: Table S1: The primers used in this study.
DOI: 10.6084/m9.figshare.5746071
title: Table S2

description: The differentially expressed circRNAs in laryngeal squamous cell carcinoma tissues and normal laryngeal tissues. FC: Fold changes. abs: absolute value.
DOI: 10.6084/m9.figshare.5746071.v1
title: The differentially expressed circRNAs in laryngeal squamous cell carcinoma tissues and normal laryngeal tissues.

description: The differentially expressed circRNAs in laryngeal squamous cell carcinoma tissues and normal laryngeal tissues. FC: Fold changes. abs: absolute value.
DOI: 10.6084/m9.figshare.5746071.v2
title: Table S2

description: The differentially expressed circRNAs in laryngeal squamous cell carcinoma tissues and normal laryngeal tissues. FC: Fold changes. abs: absolute value.
DOI: 10.6084/m9.figshare.5746074
title: Table S3

description: The most significant circRNA-miRNA interacting couples (Top 20)
DOI: 10.6084/m9.figshare.5746074.v1
title: The most significant circRNA-miRNA interacting couples

description: The most significant circRNA-miRNA interacting couples (Top 20)
DOI: 10.6084/m9.figshare.5746074.v2
title: Table S3

description: The most significant circRNA-miRNA interacting couples (Top 20)
DOI: 10.6084/m9.figshare.5746077
title: Table S4

description: The target miRNAs captured by multiple circRNAs (Top 20)
DOI: 10.6084/m9.figshare.5746077.v1
title: The target miRNAs captured by multiple circRNAs

description: The target miRNAs captured by multiple circRNAs (Top 20)
DOI: 10.6084/m9.figshare.5746080
title: Table S5

description: Functional annotation analysis of has-miR-4726-5p
DOI: 10.6084/m9.figshare.5746080.v2
title: Table S5

description: Functional annotation analysis of has-miR-4726-5p
DOI: 10.6084/m9.figshare.5746080.v1
title: Functional annotation analysis of has-miR-4726-5p

description: Functional annotation analysis of has-miR-4726-5p
DOI: 10.6084/m9.figshare.5746083
title: Table S6

description: Functional annotation analysis of has-miR-4640-5p
DOI: 10.6084/m9.figshare.5746083.v1
title: Table S6

description: Functional annotation analysis of has-miR-4640-5p
DOI: 10.6084/m9.figshare.5746317
title: Additional file 2: Figure S1. of P2X7 receptor mediates NLRP3-dependent IL-1β secretion and parasite proliferation in Toxoplasma gondii-infected human small intestinal epithelial cells

description: FHs 74 Int cells infected with T. gondii at higher infectious doses (MOI 20) reduced cell viability. FHs 74 Int cells were infected with the T. gondii GFP-RH strain at the indicated MOIs for 8 h, and the viability of FHs 74 Int cells were evaluated by an MTT assay. Figure S2. Toxoplasma gondii-induced IL-1β production in FHs 74 Int cells. FHs 74 Int cells were infected with T. gondii at an MOI of 10 for different time periods, and pro-IL-1β protein levels in the cell extracts were determined by Western blotting. a Representative blots presenting the protein levels of pro-IL-1β in mock-infected or T. gondii-infected FHs 74 Int cells (α-Tubulin served as an internal control for protein loading). b Bar plot depicting the pro-IL-1β/α-Tubulin ratio as determined by densitometric analysis of Western blotting and expressed as fold change compared with the mock-infection control. For all panels, data are presented as the mean ± SD. *P &lt; 0.05, **P &lt; 0.01, ***P &lt; 0.001 compared with the uninfected control. All data are representative of three independent experiments. (ZIP 1710 kb)
DOI: 10.6084/m9.figshare.5746317.v1
title: Additional file 2: Figure S1. of P2X7 receptor mediates NLRP3-dependent IL-1β secretion and parasite proliferation in Toxoplasma gondii-infected human small intestinal epithelial cells

description: FHs 74 Int cells infected with T. gondii at higher infectious doses (MOI 20) reduced cell viability. FHs 74 Int cells were infected with the T. gondii GFP-RH strain at the indicated MOIs for 8 h, and the viability of FHs 74 Int cells were evaluated by an MTT assay. Figure S2. Toxoplasma gondii-induced IL-1β production in FHs 74 Int cells. FHs 74 Int cells were infected with T. gondii at an MOI of 10 for different time periods, and pro-IL-1β protein levels in the cell extracts were determined by Western blotting. a Representative blots presenting the protein levels of pro-IL-1β in mock-infected or T. gondii-infected FHs 74 Int cells (α-Tubulin served as an internal control for protein loading). b Bar plot depicting the pro-IL-1β/α-Tubulin ratio as determined by densitometric analysis of Western blotting and expressed as fold change compared with the mock-infection control. For all panels, data are presented as the mean ± SD. *P &lt; 0.05, **P &lt; 0.01, ***P &lt; 0.001 compared with the uninfected control. All data are representative of three independent experiments. (ZIP 1710 kb)
DOI: 10.6084/m9.figshare.5746818
title: Raw Data from Development of bioabsorbable polylactide membrane with controllable hydrophilicity for adjustment of cell behaviours

description: Raw data for Table and Figures
DOI: 10.6084/m9.figshare.5746818.v1
title: Raw Data from Development of bioabsorbable polylactide membrane with controllable hydrophilicity for adjustment of cell behaviours

description: Raw data for Table and Figures
DOI: 10.6084/m9.figshare.5752518
title: Additional file 1: Tables S1. of Epidemiological characteristics and post-exposure prophylaxis of human rabies in Chongqing, China, 2007â 2016

description: The monthly distribution of human rabies cases in Chongqing from 2007 to 2016. Table S2. Comparison of the population distribution of human cases with that of the local population in Chongqing. Table S3. The interval of exposure and treatment time for PEP. Table S4. The proportion of cases that sought medical treatment. Table S5. The proportion of cases with exposure on head/neck. Table S6. PEP ambulant clinic conditions in Chongqing, 2016. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.5752518.v1
title: Additional file 1: Tables S1. of Epidemiological characteristics and post-exposure prophylaxis of human rabies in Chongqing, China, 2007â 2016

description: The monthly distribution of human rabies cases in Chongqing from 2007 to 2016. Table S2. Comparison of the population distribution of human cases with that of the local population in Chongqing. Table S3. The interval of exposure and treatment time for PEP. Table S4. The proportion of cases that sought medical treatment. Table S5. The proportion of cases with exposure on head/neck. Table S6. PEP ambulant clinic conditions in Chongqing, 2016. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.5753406
title: Structures for the pathway pictured in Figure 12. from Isomers and energy landscapes of micro-hydrated sulfite and chlorate clusters

description: Structures and energies for minima and transition states in the pathway pictured in Figure 12, in XYZ format.
DOI: 10.6084/m9.figshare.5753406.v1
title: Structures for the pathway pictured in Figure 12. from Isomers and energy landscapes of micro-hydrated sulfite and chlorate clusters

description: Structures and energies for minima and transition states in the pathway pictured in Figure 12, in XYZ format.
DOI: 10.6084/m9.figshare.5753409
title: Low energy minima in the sulfite + 8H2O landscape from Isomers and energy landscapes of micro-hydrated sulfite and chlorate clusters

description: Structures and energies in kcal/mol for pictured low energy minima in the landscape for sulfite ions with 8 water molecules in XYZ format.
DOI: 10.6084/m9.figshare.5753409.v1
title: Low energy minima in the sulfite + 8H2O landscape from Isomers and energy landscapes of micro-hydrated sulfite and chlorate clusters

description: Structures and energies in kcal/mol for pictured low energy minima in the landscape for sulfite ions with 8 water molecules in XYZ format.
DOI: 10.6084/m9.figshare.5753412
title: Putative global minima for hydrated chlorate ions with 1-20 water molecules. from Isomers and energy landscapes of micro-hydrated sulfite and chlorate clusters

description: Putative GM structures and energies in kcal/mol for chlorate ions with 1-20 water molecules in XYZ format.
DOI: 10.6084/m9.figshare.5753412.v1
title: Putative global minima for hydrated chlorate ions with 1-20 water molecules. from Isomers and energy landscapes of micro-hydrated sulfite and chlorate clusters

description: Putative GM structures and energies in kcal/mol for chlorate ions with 1-20 water molecules in XYZ format.
DOI: 10.6084/m9.figshare.5753415
title: Low energy minima in the chlorate + 8H2O landscape from Isomers and energy landscapes of micro-hydrated sulfite and chlorate clusters

description: Structures and energies in kcal/mol for pictured low energy minima in the landscape for chlorate ions with 8 water molecules in XYZ format.
DOI: 10.6084/m9.figshare.5753415.v1
title: Low energy minima in the chlorate + 8H2O landscape from Isomers and energy landscapes of micro-hydrated sulfite and chlorate clusters

description: Structures and energies in kcal/mol for pictured low energy minima in the landscape for chlorate ions with 8 water molecules in XYZ format.
DOI: 10.6084/m9.figshare.5753418
title: Putative global minima for hydrated sulfite ions with 1-20 water molecules. from Isomers and energy landscapes of micro-hydrated sulfite and chlorate clusters

description: Putative GM structures and energies in kcal/mol for sulfite ions with 1-20 water molecules in XYZ format.
DOI: 10.6084/m9.figshare.5753418.v1
title: Putative global minima for hydrated sulfite ions with 1-20 water molecules. from Isomers and energy landscapes of micro-hydrated sulfite and chlorate clusters

description: Putative GM structures and energies in kcal/mol for sulfite ions with 1-20 water molecules in XYZ format.
DOI: 10.6084/m9.figshare.5755434
title: Cognitive distortions and gambling near-misses in Internet Gaming Disorder: A preliminary study

description: The raw data from the slot machine task
DOI: 10.6084/m9.figshare.5755470
title: Additional file 1: Table S1. of Evidence for multiple-insecticide resistance in urban Aedes albopictus populations in southern China

description: Knockdown time (KDT) and mortality rate of Aedes albopictus populations from urban, suburban and rural settings in Guangzhou, China using the standard WHO tube susceptibility bioassay against four insecticides. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5755470.v1
title: Additional file 1: Table S1. of Evidence for multiple-insecticide resistance in urban Aedes albopictus populations in southern China

description: Knockdown time (KDT) and mortality rate of Aedes albopictus populations from urban, suburban and rural settings in Guangzhou, China using the standard WHO tube susceptibility bioassay against four insecticides. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5755593
title: Additional file 1: Figure S1. of Fast genomic prediction of breeding values using parallel Markov chain Monte Carlo with convergence diagnosis

description: Trace plots of posterior samples of residual variance from TBM-BayesA (16 chains) for SW of the first 2000 iterations. Figure S2. Trace plots of posterior samples of residual variance from TBM-BayesCπ (16 chains) for SW of the first 2000 iterations. Figure S3. Trace plots of posterior samples of residual variance from TBM-BayesA (16 chains) for CBFT of the first 1800 iterations. Figure S4. Trace plots of posterior samples of residual variance from TBM-BayesCπ (16 chains) for CBFT of the first 2500 iterations. Figure S5. Trace plots of posterior samples of residual variance from TBM-BayesA (16 chains) for CW of the first 2000 iterations. Figure S6. Trace plots of posterior samples of residual variance from TBM-BayesCπ (16 chains) for CW of the first 2000 iterations. Figure S7. Trace plots of posterior samples of residual variance from TBM-BayesA (16 chains) for ADG of the first 1400 iterations. Figure S8. Trace plots of posterior samples of residual variance from TBM-BayesCπ (16 chains) for ADG of the first 1400 iterations. Figure S9. Plot of running time in scenario1.FBM-BayesA: Fixed burn-in multiple chains parallel BayesA, TBM-BayesA: Tunable burn-in multiple chains parallel BayesA, FBM-BayesCπ: Fixed burn-in multiple chains parallel BayesCπ, TBM-BayesCπ: Tunable burn-in multiple chains parallel BayesCπ. One chain is equivalent to sequential genomic selection. Figure S10. Plot of running time in scenario 2. Figure S11. Plot of running time in scenario 3 Figure S12. Convergence of TBM-BayesA for SW. Iteration: 50,000, initial Burn-in:10,000, threshold:0.001. Figure S13. Convergence of TBM-BayesCπ for SW. Iteration: 50,000, initial Burn-in:10,000, threshold:0.001. Table S1. Running time using five genomic prediction approaches in scenario 1. Table S2. Running time using five genomic prediction approaches in scenario 2. Table S3. Running time using five genomic prediction approaches in scenario 3. (ZIP 405 kb)
DOI: 10.6084/m9.figshare.5755593.v1
title: Additional file 1: Figure S1. of Fast genomic prediction of breeding values using parallel Markov chain Monte Carlo with convergence diagnosis

description: Trace plots of posterior samples of residual variance from TBM-BayesA (16 chains) for SW of the first 2000 iterations. Figure S2. Trace plots of posterior samples of residual variance from TBM-BayesCπ (16 chains) for SW of the first 2000 iterations. Figure S3. Trace plots of posterior samples of residual variance from TBM-BayesA (16 chains) for CBFT of the first 1800 iterations. Figure S4. Trace plots of posterior samples of residual variance from TBM-BayesCπ (16 chains) for CBFT of the first 2500 iterations. Figure S5. Trace plots of posterior samples of residual variance from TBM-BayesA (16 chains) for CW of the first 2000 iterations. Figure S6. Trace plots of posterior samples of residual variance from TBM-BayesCπ (16 chains) for CW of the first 2000 iterations. Figure S7. Trace plots of posterior samples of residual variance from TBM-BayesA (16 chains) for ADG of the first 1400 iterations. Figure S8. Trace plots of posterior samples of residual variance from TBM-BayesCπ (16 chains) for ADG of the first 1400 iterations. Figure S9. Plot of running time in scenario1.FBM-BayesA: Fixed burn-in multiple chains parallel BayesA, TBM-BayesA: Tunable burn-in multiple chains parallel BayesA, FBM-BayesCπ: Fixed burn-in multiple chains parallel BayesCπ, TBM-BayesCπ: Tunable burn-in multiple chains parallel BayesCπ. One chain is equivalent to sequential genomic selection. Figure S10. Plot of running time in scenario 2. Figure S11. Plot of running time in scenario 3 Figure S12. Convergence of TBM-BayesA for SW. Iteration: 50,000, initial Burn-in:10,000, threshold:0.001. Figure S13. Convergence of TBM-BayesCπ for SW. Iteration: 50,000, initial Burn-in:10,000, threshold:0.001. Table S1. Running time using five genomic prediction approaches in scenario 1. Table S2. Running time using five genomic prediction approaches in scenario 2. Table S3. Running time using five genomic prediction approaches in scenario 3. (ZIP 405 kb)
DOI: 10.6084/m9.figshare.5755596
title: Additional file 1: Table S1. of Time-course transcriptome analysis of human cellular reprogramming from multiple cell types reveals the drastic change occurs between the mid phase and the late phase

description: List of microarray sample data which used in this study. (TSV 5 kb)
DOI: 10.6084/m9.figshare.5755596.v1
title: Additional file 1: Table S1. of Time-course transcriptome analysis of human cellular reprogramming from multiple cell types reveals the drastic change occurs between the mid phase and the late phase

description: List of microarray sample data which used in this study. (TSV 5 kb)
DOI: 10.6084/m9.figshare.5755635
title: Additional file 4: Table S2 of Time-course transcriptome analysis of human cellular reprogramming from multiple cell types reveals the drastic change occurs between the mid phase and the late phase

description: List of gene symbols clustered with five groups in Fig. 3. (TSV 24 kb)
DOI: 10.6084/m9.figshare.5755635.v1
title: Additional file 4: Table S2 of Time-course transcriptome analysis of human cellular reprogramming from multiple cell types reveals the drastic change occurs between the mid phase and the late phase

description: List of gene symbols clustered with five groups in Fig. 3. (TSV 24 kb)
DOI: 10.6084/m9.figshare.5755818
title: Additional file1: Table S1. of Analysis of microarrays of miR-34a and its identification of prospective target gene signature in hepatocellular carcinoma

description: GO enrichment analysis of HCC related genes. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5755818.v1
title: Additional file1: Table S1. of Analysis of microarrays of miR-34a and its identification of prospective target gene signature in hepatocellular carcinoma

description: GO enrichment analysis of HCC related genes. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5755824
title: Additional file2: Table S2. of Analysis of microarrays of miR-34a and its identification of prospective target gene signature in hepatocellular carcinoma

description: GO enrichment analysis of miR-34a target genes. (XLSX 14Â kb)