cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12102681
title: eQTL GWAS association data for ACE2 and TMPRSS2 in lung tissue from GTEx

description: GTEx genetic association estimates were obtained in 515 individuals of predominantly European (85%) ancestry. Whole genome sequencing was performed by the Broad Institute’s Genomics Platform and only common variants (minor allele frequency &gt; 0.05) were retained. Genome-wide eQTL analysis was performed for the expression of /ACE2/ and /TMPRSS2/ in primary tissue samples taken from the lung. Genetic associations with imputed variants across the autosomal chromosomes were adjusted for five principal components from the genotype data, 60 probabilistic estimation of expression residuals factors, sequencing platform (Illumina HiSeq 2000 or HiSeq X), sequencing protocol (polymerase chain reaction-based or free), and sex. For each gene, expression values between samples were normalized using the trimmed means of M-values method in EdgeR. Expression values were normalized across samples using an inverse normal transformation. <br>
DOI: 10.6084/m9.figshare.12102609
title: Dataset for the article Does Visual Stimulation by Photographs of Cats and Dogs Make People Happier and More Optimistic?

description: Dataset used in the article "Does Visual Stimulation by Photographs of Cats and Dogs Make People Happier and More Optimistic?"ColumnsIDis_preview: true - response by the researcher to check the questionnaire, it should be removedremove: respondent checked that his/her responses are not valid and should not be used in future analysisfinished_proc: percentage of the questionnaire finisheddate_time: filing of the questionnaire started at this timeduration_formatted: duration of the filling of the questionnairebrowserbrowser_versionOS: operating systempriming: true - primed group, false - control groupcat_dog: objects on photos showngenderage: in yerssex_o: attraction to people of the opposite sex (scale 1 - 7)sex_s: attraction to people of the same sex (scale 1 - 7) orientation: computed as the difference of previous twomood: actual mood (scale 0 - 5)condition_phys: physical condition (scale 0 - 5)condition_psych: mental condition (scale 0 - 5)life_quality: life quality (scale 0 - 5)optimism: mean of previous threeoptimism_zskore: z-score of the previous children_own: how many children does respondent havewanted_sons: total number of sons which respondent would like to havewanted_daughters: total number of daughters which respondent would like to havewanted_children: a sum of previous twoliking_dogs: how much respondent likes dogs (scale 1 - 100)present_whenever_dog: respondent has ever kept a dogpresent_now_dog: respondent keeps dog nowpresent_Ndogs: how many dogs does respondent keep now liking_cats: how much respondent likes cats (scale 1 - 100)present_whenever_cat: respondent has ever kept a catpresent_now_cat: respondent keeps cat nowpresent_Ncats: how many cats does respondent keep now
DOI: 10.6084/m9.figshare.12102681.v1
title: eQTL GWAS association data for ACE2 and TMPRSS2 in lung tissue from GTEx

description: GTEx genetic association estimates were obtained in 515 individuals of predominantly European (85%) ancestry. Whole genome sequencing was performed by the Broad Institute’s Genomics Platform and only common variants (minor allele frequency &gt; 0.05) were retained. Genome-wide eQTL analysis was performed for the expression of /ACE2/ and /TMPRSS2/ in primary tissue samples taken from the lung. Genetic associations with imputed variants across the autosomal chromosomes were adjusted for five principal components from the genotype data, 60 probabilistic estimation of expression residuals factors, sequencing platform (Illumina HiSeq 2000 or HiSeq X), sequencing protocol (polymerase chain reaction-based or free), and sex. For each gene, expression values between samples were normalized using the trimmed means of M-values method in EdgeR. Expression values were normalized across samples using an inverse normal transformation. <br>
DOI: 10.6084/m9.figshare.12102609.v1
title: Dataset for the article Does Visual Stimulation by Photographs of Cats and Dogs Make People Happier and More Optimistic?

description: Dataset used in the article "Does Visual Stimulation by Photographs of Cats and Dogs Make People Happier and More Optimistic?"ColumnsIDis_preview: true - response by the researcher to check the questionnaire, it should be removedremove: respondent checked that his/her responses are not valid and should not be used in future analysisfinished_proc: percentage of the questionnaire finisheddate_time: filing of the questionnaire started at this timeduration_formatted: duration of the filling of the questionnairebrowserbrowser_versionOS: operating systempriming: true - primed group, false - control groupcat_dog: objects on photos showngenderage: in yerssex_o: attraction to people of the opposite sex (scale 1 - 7)sex_s: attraction to people of the same sex (scale 1 - 7) orientation: computed as the difference of previous twomood: actual mood (scale 0 - 5)condition_phys: physical condition (scale 0 - 5)condition_psych: mental condition (scale 0 - 5)life_quality: life quality (scale 0 - 5)optimism: mean of previous threeoptimism_zskore: z-score of the previous children_own: how many children does respondent havewanted_sons: total number of sons which respondent would like to havewanted_daughters: total number of daughters which respondent would like to havewanted_children: a sum of previous twoliking_dogs: how much respondent likes dogs (scale 1 - 100)present_whenever_dog: respondent has ever kept a dogpresent_now_dog: respondent keeps dog nowpresent_Ndogs: how many dogs does respondent keep now liking_cats: how much respondent likes cats (scale 1 - 100)present_whenever_cat: respondent has ever kept a catpresent_now_cat: respondent keeps cat nowpresent_Ncats: how many cats does respondent keep now
DOI: 10.6084/m9.figshare.12102510
title: MSW_EnvImpacts_Projections.zip

description: Dataset of future projections of Municipal Solid Waste under SSP scenarios 1965-2100, and dataset of environmental impacts (GHG emissions, recyclable stocks, Nitrogen stocks and flows, Plastic inputs to oceans) 1965-2100.<br>Described in https://doi.org/10.1088/1748-9326/ab8659
DOI: 10.6084/m9.figshare.12102495
title: Minimal Data Set.xlsx

description: Data from reliability studies to calculate reliability measures of ICC's and Bland Altman Plots
DOI: 10.6084/m9.figshare.12102495.v1
title: Minimal Data Set.xlsx

description: Data from reliability studies to calculate reliability measures of ICC's and Bland Altman Plots
DOI: 10.6084/m9.figshare.12102354
title: CLINICAL - GENEALOGICAL ANALYSIS OF MUCOVISCIDOSIS

description: 1. The genetic relations in families with mucoviscidosis found in the present clinical material do not correspond to the true segregational relations of the fre­quencies of the affected children. 2. One of the reasons which influence the increase of the frequency of affected children in families with mucoviscidosis on condition of incomplete detection is the diagnostic dependence in many cases upon the presence of the affected or dead sibs in a family, 3. The analysis of segregation in families found by the first affected child elimi­nates the diagnostic dependence and makes the sample random. 4. The established fact of diagnostic dependence upon the presence of the second patient in a family may be the natural cause of the deviation of segrega- tional relations in some other hereditary diseases which are characterized by a wide clinical polymorphism.
DOI: 10.6084/m9.figshare.12102363
title: CHARACTERIZATION OF HUMAN CHROMOSOMAL CONSTITUTIVE HETEROCHROMATIN

description: Our results are presented in Table I. A different variability of centromeric hetero­chromatin of chromosomes 1, 9 and 16 was observed. Quite a low variability was found in chromosome 16, while chromosomes 9 and 1 showed a high degree of variability, which was more accentuated in chromosome 9 than in chromo­some 1. In all four groups of persons there was a similar pattern of variability with the only exception mentioned below. On the whole, band 1q12 was either enlarged or diminished, while band 9q12 was most frequently enlarged. Pericentric inversions were observed very rarely and only on chromosome 9. The only exception was found in the nearest relatives of children with abnor­mal phenotype and karyotype: an unusually narrow band 1q12 was frequently detected, often onboth members of the chromosomal pair. The study is to be continued.
DOI: 10.6084/m9.figshare.12102372
title: INDICATIONS FOR PRENATAL KARYOTYPING

description: Prenatal diagnosis has become a major aid to genetic counseling and for this, several important areas of technology have evolved, especially cytogenetic prenatal diagnosis, using analysis of cultured cells from the amniotic fluid at mid-trimester. Because of its high reliability and safety record with the lowest fetal loss and embryonic damage, amniocentesis has become the most common practice for prenatal diagnosis. However, CVS (chorionic villus sample) has gained popularity as a successful first trimester prenatal diagnostic technique since the mid 1980s, probably because of the advantage of establishing a diagnosis some weeks earlier in the pregnancy. Cordocentesis is a procedure used to obtain a sample from fetal blood directly from the umbilical cord in cases where amniocentesis is not possible or is used to give a quick result only in high-risk cases since procedure related pregnancy loss is high.The paper provides analysis of results of invasive pre­natal diagnostics (174 cases) performed in the Educational Surgical Clinic of AMU and Center for Genetic Diagnostics "AFGEN"over 2015-2017. Chromosomal anomalies were detected at 5,1% of cases. The most frequent pathologies were Down’s syndrome and balanced translocations. Indications for prenatal diagnosis were formed on the basis of standard risk factors. The main one was the age of pregnant women over 35 years old and serum markers of chromosomal abnormalities. Based on the findings, the author pointed out the necessity of wider application of invasive prena­tal diagnostics in the region.
DOI: 10.6084/m9.figshare.12102354.v1
title: CLINICAL - GENEALOGICAL ANALYSIS OF MUCOVISCIDOSIS

description: 1. The genetic relations in families with mucoviscidosis found in the present clinical material do not correspond to the true segregational relations of the fre­quencies of the affected children. 2. One of the reasons which influence the increase of the frequency of affected children in families with mucoviscidosis on condition of incomplete detection is the diagnostic dependence in many cases upon the presence of the affected or dead sibs in a family, 3. The analysis of segregation in families found by the first affected child elimi­nates the diagnostic dependence and makes the sample random. 4. The established fact of diagnostic dependence upon the presence of the second patient in a family may be the natural cause of the deviation of segrega- tional relations in some other hereditary diseases which are characterized by a wide clinical polymorphism.
DOI: 10.6084/m9.figshare.12102363.v1
title: CHARACTERIZATION OF HUMAN CHROMOSOMAL CONSTITUTIVE HETEROCHROMATIN

description: Our results are presented in Table I. A different variability of centromeric hetero­chromatin of chromosomes 1, 9 and 16 was observed. Quite a low variability was found in chromosome 16, while chromosomes 9 and 1 showed a high degree of variability, which was more accentuated in chromosome 9 than in chromo­some 1. In all four groups of persons there was a similar pattern of variability with the only exception mentioned below. On the whole, band 1q12 was either enlarged or diminished, while band 9q12 was most frequently enlarged. Pericentric inversions were observed very rarely and only on chromosome 9. The only exception was found in the nearest relatives of children with abnor­mal phenotype and karyotype: an unusually narrow band 1q12 was frequently detected, often onboth members of the chromosomal pair. The study is to be continued.
DOI: 10.6084/m9.figshare.12102372.v1
title: INDICATIONS FOR PRENATAL KARYOTYPING

description: Prenatal diagnosis has become a major aid to genetic counseling and for this, several important areas of technology have evolved, especially cytogenetic prenatal diagnosis, using analysis of cultured cells from the amniotic fluid at mid-trimester. Because of its high reliability and safety record with the lowest fetal loss and embryonic damage, amniocentesis has become the most common practice for prenatal diagnosis. However, CVS (chorionic villus sample) has gained popularity as a successful first trimester prenatal diagnostic technique since the mid 1980s, probably because of the advantage of establishing a diagnosis some weeks earlier in the pregnancy. Cordocentesis is a procedure used to obtain a sample from fetal blood directly from the umbilical cord in cases where amniocentesis is not possible or is used to give a quick result only in high-risk cases since procedure related pregnancy loss is high.The paper provides analysis of results of invasive pre­natal diagnostics (174 cases) performed in the Educational Surgical Clinic of AMU and Center for Genetic Diagnostics "AFGEN"over 2015-2017. Chromosomal anomalies were detected at 5,1% of cases. The most frequent pathologies were Down’s syndrome and balanced translocations. Indications for prenatal diagnosis were formed on the basis of standard risk factors. The main one was the age of pregnant women over 35 years old and serum markers of chromosomal abnormalities. Based on the findings, the author pointed out the necessity of wider application of invasive prena­tal diagnostics in the region.
DOI: 10.6084/m9.figshare.12102348
title: THE FREQUENCY AND DISTRIBUTION OF SISTER CHROMATID EXCHANGES (SCES) IN THE INDIVIDUAL CHROMOSOMES OF HUMAN KA¬RYOTYPE

description: The difference in the number of SCEs found per cell in 50 mitoses of control subjects when evaluated from photomicrographs or karyotypes is small but sig­nificant (p&lt; 0.01). Therefore, the data described have been obtained from karyo­types only. The mean value of 9.5 SCEs per mitosis found in the control group was in no way significantly different from mean values of the other groups, i.e. those consisting of pathological karyotypes and lymphoblastoid cell lines (p &gt;0.05). High frequency of SCEs (20%) was found in the centromeric region of chro­mosomes after the 2nd and 3rd divisions in BUdR medium (6).<i></i> The distribution of SCEs both observed and expected on the basis of the rela­tive length of chromosomal groups in the karyotype with results of χ2 test is shown in Table II. The changes were similar in all observed groups. The only exception were B group chromosomes of the lymphoblastoid ceil lines, where the number of breakpoints increased significantly (p&lt;0.01). In this particular chromosomal group the breakpoints leading to exchanges were distributed pro­portionally along the whole length of all chromosomes. Significant difference was found not only as against the expected number of SCEs but also as against the control group. The increased number of breakpoints on the long chromosomes was naturally matched by their decrease in small chromosomes (5).<i></i> We preferred to evaluate the non-banded chromosomes (G-banding considerably interferes with the accuracy of SCE calculation), the regions of break points are only roughly delineated. Even so it is clear that some regions are more often involved in SCEs than others. This is the case especially with regions 1q1, 3q2, 4q2, 8c and 16c. SCEs seem to be preferentially located on G-negative bands, as mentioned also by Morad , Jonasson and Lindsten (3)
DOI: 10.25810/fj1y-8c74.19
title: International Wire Services Coverage of Climate Change or Global Warming, 2004-2020 - July 2020 

description:         The Media and Climate Change Observatory Data monitors 117 sources (across newspapers, radio and TV) in 53 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.12102123
title: Supplementary File 1 – aNMJ-morph macro text (Minty et al, 2020, RSOS) from aNMJ-morph: a simple macro for rapid analysis of neuromuscular junction morphology

description: Full IJM-text (ImageJ Macro Language) transcription (Minty et al, 2020, RSOS)
DOI: 10.6084/m9.figshare.12102123.v1
title: Supplementary File 1 – aNMJ-morph macro text (Minty et al, 2020, RSOS) from aNMJ-morph: a simple macro for rapid analysis of neuromuscular junction morphology

description: Full IJM-text (ImageJ Macro Language) transcription (Minty et al, 2020, RSOS)
DOI: 10.6084/m9.figshare.12101862
title: Additional file 2 of Corporate political activity of the baby food industry: the example of Nestlé in the United States of America

description: Additional file 2. All data collected for the study of the CPA of Nestlé in the USA. All raw data and associated relevant information collected for the study.
DOI: 10.6084/m9.figshare.12101862.v1
title: Additional file 2 of Corporate political activity of the baby food industry: the example of Nestlé in the United States of America

description: Additional file 2. All data collected for the study of the CPA of Nestlé in the USA. All raw data and associated relevant information collected for the study.
DOI: 10.5517/ccdc.csd.cc24z61d
title: CCDC 1995223: Experimental Crystal Structure Determination

description: Related Article: Geraldine Backman-Blanco, Hugo Valdés, María Teresa Ramírez-Apan, Patricia Cano-Sanchez, Simón Hernandez-Ortega, Adrian L. Orjuela, Jorge Alí-Torres, Areli Flores-Gaspar, Reyna Reyes-Martínez, David Morales-Morales|2020|J.Inorg.Biochem.|211|111206|doi:10.1016/j.jinorgbio.2020.111206
DOI: 10.6084/m9.figshare.12101685
title: Additional file 5 of Genomic measures of inbreeding coefficients and genome-wide scan for runs of homozygosity islands in Iranian river buffalo, Bubalus bubalis

description: Additional file 5. List of integrated haplotype homozygosity scores (iHS) for all SNPs in Azeri (AZ) and Khuzestani (KHZ) breeds.
DOI: 10.6084/m9.figshare.12101679
title: Additional file 4 of Genomic measures of inbreeding coefficients and genome-wide scan for runs of homozygosity islands in Iranian river buffalo, Bubalus bubalis

description: Additional file 4. The genes located in detected runs of homozygosity (ROH) islands in the Khuzestani (KHZ) breed that were significantly enriched (P ≤ 0.05) in biological processes (BP), cellular component (CC) and molecular function (MF) Gene Ontology (GO) terms.
DOI: 10.6084/m9.figshare.12101685.v1
title: Additional file 5 of Genomic measures of inbreeding coefficients and genome-wide scan for runs of homozygosity islands in Iranian river buffalo, Bubalus bubalis

description: Additional file 5. List of integrated haplotype homozygosity scores (iHS) for all SNPs in Azeri (AZ) and Khuzestani (KHZ) breeds.
DOI: 10.6084/m9.figshare.12101679.v1
title: Additional file 4 of Genomic measures of inbreeding coefficients and genome-wide scan for runs of homozygosity islands in Iranian river buffalo, Bubalus bubalis

description: Additional file 4. The genes located in detected runs of homozygosity (ROH) islands in the Khuzestani (KHZ) breed that were significantly enriched (P ≤ 0.05) in biological processes (BP), cellular component (CC) and molecular function (MF) Gene Ontology (GO) terms.
DOI: 10.6084/m9.figshare.12101673
title: Additional file 3 of Genomic measures of inbreeding coefficients and genome-wide scan for runs of homozygosity islands in Iranian river buffalo, Bubalus bubalis

description: Additional file 3. Frequently occurring runs of homozygosity (ROH) regions (i.e. ROH islands) in Azeri (AZ) and Khuzestani (KHZ) breeds. The last column represents the average r2 of ROH islands divided by the average r2 of each chromosome.
DOI: 10.6084/m9.figshare.12101673.v1
title: Additional file 3 of Genomic measures of inbreeding coefficients and genome-wide scan for runs of homozygosity islands in Iranian river buffalo, Bubalus bubalis

description: Additional file 3. Frequently occurring runs of homozygosity (ROH) regions (i.e. ROH islands) in Azeri (AZ) and Khuzestani (KHZ) breeds. The last column represents the average r2 of ROH islands divided by the average r2 of each chromosome.
DOI: 10.6084/m9.figshare.12101667
title: Additional file 2 of Genomic measures of inbreeding coefficients and genome-wide scan for runs of homozygosity islands in Iranian river buffalo, Bubalus bubalis

description: Additional file 2. The estimated inbreeding coefficient using runs of homozygosity (ROH) &gt; 1 Mb (FROH), diagonal elements of genomic relationship matrix (FGRM), excess of homozygosity (FHOM) and correlation between uniting gametes (FUNI) in Azeri (AZ) and Khuzestani (KHZ) breeds.
DOI: 10.6084/m9.figshare.12101664
title: Additional file 1 of Genomic measures of inbreeding coefficients and genome-wide scan for runs of homozygosity islands in Iranian river buffalo, Bubalus bubalis

description: Additional file 1. List of the detected runs of homozygosity (ROH) in Azeri (AZ) and Khuzestani (KHZ) breeds.
DOI: 10.6084/m9.figshare.12101667.v1
title: Additional file 2 of Genomic measures of inbreeding coefficients and genome-wide scan for runs of homozygosity islands in Iranian river buffalo, Bubalus bubalis

description: Additional file 2. The estimated inbreeding coefficient using runs of homozygosity (ROH) &gt; 1 Mb (FROH), diagonal elements of genomic relationship matrix (FGRM), excess of homozygosity (FHOM) and correlation between uniting gametes (FUNI) in Azeri (AZ) and Khuzestani (KHZ) breeds.
DOI: 10.6084/m9.figshare.12101664.v1
title: Additional file 1 of Genomic measures of inbreeding coefficients and genome-wide scan for runs of homozygosity islands in Iranian river buffalo, Bubalus bubalis

description: Additional file 1. List of the detected runs of homozygosity (ROH) in Azeri (AZ) and Khuzestani (KHZ) breeds.
DOI: 10.6084/m9.figshare.12101442
title: Pollen data of Zhang_Sunl_2011_GPC

description: Neogene Pollen data from the southern foreland basin of Tian Shan Mlountains
DOI: 10.6084/m9.figshare.12101376
title: processed images for CO2 data at 570eV

description: This is a set of processed VMI images for CO2 570eV.
DOI: 10.6084/m9.figshare.12101058
title: Annotated mitochondrial genomes of Mycosphaerellaceae

description: Annotated sequences of Mycosphaerellaceae mitochondrial genomes of P. eumusae, P. musae, S. musiva and S. populicola
DOI: 10.6084/m9.figshare.12101067
title: sample.csv.gz

description: test
DOI: 10.6084/m9.figshare.12101058.v1
title: Annotated mitochondrial genomes of Mycosphaerellaceae

description: Annotated sequences of Mycosphaerellaceae mitochondrial genomes of P. eumusae, P. musae, S. musiva and S. populicola
DOI: 10.6084/m9.figshare.12101055
title: xml files used to build Bayesian phylogenies

description: xml files used to build Bayesian phylogenies and estimate divergency times of Mycosphaerellaceae species
DOI: 10.6084/m9.figshare.12101055.v1
title: xml files used to build Bayesian phylogenies

description: xml files used to build Bayesian phylogenies and estimate divergency times of Mycosphaerellaceae species
DOI: 10.6084/m9.figshare.12101013
title: P.fijiensis DATA

description: Sequences of P. fijiensis some genes and transcripts obtained by PCR amplification and sanger sequencing and full mitochondrial genome sequence obtained by illumina
DOI: 10.6084/m9.figshare.12101013.v1
title: P.fijiensis DATA

description: Sequences of P. fijiensis some genes and transcripts obtained by PCR amplification and sanger sequencing and full mitochondrial genome sequence obtained by illumina
DOI: 10.6084/m9.figshare.12100758
title: Bajczyk .bam files

description: bam files for visualisation of RNA-seq data in IGV or other genome browser