cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/2sw758pw38.1
title: Dairy Tank Monitoring Data

description: This dataset contains detailed monitoring records from milk storage tanks in dairy farms, collected using a floating device equipped with multiple sensors. The device was designed to monitor critical parameters related to the milk's storage conditions, both above and below the milk's surface, ensuring comprehensive data collection throughout the entire tank.

The dataset includes the following types of data:
- Temperature readings: Collected from sensors positioned both above and below the milk's flotation line, providing a complete profile of the thermal conditions in the tank. This allows for the identification of temperature gradients that may affect milk quality.
- Agitation data: Captured through a built-in gyroscope and accelerometer, which monitor the movement and intensity of the milk's agitation cycles. This information is crucial to ensuring proper milk homogenization and can help in optimizing agitation parameters to improve energy efficiency and mixing effectiveness.

All data points are timestamped and collected at regular intervals. This dataset provides a valuable resource for analyzing the operational conditions inside milk storage tanks and identifying potential problems that could affect milk quality.
DOI: 10.17632/2sw758pw38.2
title: Dataset on Bulk Milk Tank Performance

description: This dataset includes comprehensive data on milk storage conditions and milk quality collected from a dairy farm located in Talavera de la Reina, Spain, during the period from August 3, 2024, to October 15, 2024. The data were collected through a combination of on-farm sensors installed in the milk storage tank and laboratory analyses performed at the LILCAM laboratory (Laboratorio Interprofesional Lácteo de Castilla-La Mancha).

The dataset consists of:
- Storage Tank Data: Continuous measurements of temperature and agitation recorded by IoT sensors installed inside the milk storage tank. The sensors monitored the tank 24/7, capturing detailed data on temperature variations and the mechanical agitation process.
- Meteorological Data: Daily weather data, including temperature and humidity, recorded at the farm location. These data were obtained from the AEMET (Agencia Estatal de Meteorología) station nearest to the farm, allowing an assessment of the influence of environmental factors on the milk storage process.
- Laboratory Quality Data: Comprehensive milk quality analyses, including parameters such as fat content, bacteriology (cfu/ml), somatic cell count (SCC), urea concentration, and other key indicators of milk quality.

The data are stored in CSV format, with separate files for each data type.
DOI: 10.17632/nsjbw2d8r2.1
title: Supplemental Materials for "A Phase 2a Trial of Brepocitinib for Cicatricial Alopecia"

description: Supplemental material for "A phase 2a trial of brepocitinib for cicatricial alopecia"
DOI: 10.17632/z9hypwjpn2.1
title: LDHU3_10.1560

description: PAB1-binding protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/pxt4khtxjz.1
title: The MRI dataset of "Moderate Aerobic Exercise in combination with metformin in Intermuscular Adipose Tissue (IMAT) and its Functional MRI in Non-Streptozotocin Prediabetic Rats" (part1)

description: The MRI dataset of "Moderate Aerobic Exercise in combination with metformin in Intermuscular Adipose Tissue (IMAT) and its Functional MRI in Non-Streptozotocin Prediabetic Rats" (part1)
DOI: 10.17632/52zbt6yv58.1
title: Tissue-specific thyroid hormone signaling participates in subcutaneous adipose tissue alteration in the aging process

description: Functional changes in subcutaneous adipose tissue (SAT) occur earlier in the aging process and play an important role in the occurrence and development of age-related metabolic diseases. The mechanism of this phenomenon is still unclear, and the change in adipose tissue with age is poorly understood. The combination of gene expression (RNA-seq) and chromatin accessibility (ATAC-seq) was established in SAT from human subjects to investigate the major alterations and discover the associated key factors in the aging process. In the present study, RNA-seq revealed that 331 genes were upregulated and 349 genes were downregulated in SAT from elderly individuals. Oxygen consumption experiments and immunofluorescence staining also showed alterations in mitochondrial function in SAT of different ages. ATAC-seq identified the dynamics of chromatin accessibility of the SAT genome at different ages, which were enriched in thyroid hormone receptors and their co-transcription factor-binding sites. Combined analysis identified seven specific genes related to mitochondrial function, including NCF1, NLRP3, DUOX1, IFI30, P2RX1, P2RX6, and PRODH. In vitro experiments verified that the transcriptional expression of the seven genes was regulated by thyroid hormone. Thus, the present study demonstrated that in elderly individuals, the function, in addition to distribution, of SAT undergoes significant changes, primarily in mitochondria, which may be due to tissue-specific insensitivity to thyroid hormone signaling.
DOI: 10.17632/b39w832tb2.1
title: Data of Psychophysiological responses to eye contact with a humanoid robot: Impact of perceived intentionality

description: Data for the statistical analyses of an upcoming paper Psychophysiological responses to eye contact with a humanoid robot: Impact of perceived intentionality. The Excel file contains metadata in notes as well as a participant info table.
DOI: 10.17632/2xvrgs2hz9.1
title: LINF_350016300

description: Dolichyl-diphosphooligosaccharide--protein glycotransferase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/dd49c8y2cc.1
title: R project to assess the environmental impacts of the main Spanish crops at a regional level

description: The collated data correspond to the parameters to estimate the resources consumption and the emissions to the environment from the main farming activities (resources consumption and emissions from infrastructure building and management, fertiliser and pesticide production, on-field fertiliser and pesticide emissions, fuel consumption from machinery use, and irrigation), together with the environmental impacts of the unit processes (e.g. electricity mix, production of agricultural inputs) required to assess the environmental impacts from a panel of reference holdings at the main NUTS 2 in Spain. These data were compiled in a set of excel sheets and subsequently operated (tidying, transforming, visualisation and modelling operations) by developing a set of scripts using R programming language and the RStudio interface.
DOI: 10.17632/b4bpb4whzz.1
title: LINF_350014000

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/t6byf8cx4s.1
title: LINF_350014900

description: Zinc finger protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/wd9367jyvs.1
title: Biot et al. 2024

description: MEI4, SYCP3 staining in synchronized mouse spermatocytes WT, Spo11KO, Prdm9KO, Iho1KO, Hormad1KO
gH2AX and RPA staining in juvenile mouse spermatocytes of WT and Prdm9Mei4KO
DOI: 10.17632/wd9367jyvs.2
title: Biot et al. 2024

description: MEI4, SYCP3 staining in synchronized mouse spermatocytes WT, Spo11KO, Prdm9KO, Iho1KO, Hormad1KO
gH2AX and RPA staining in juvenile mouse spermatocytes of WT and Prdm9Mei4KO
DOI: 10.17632/wd9367jyvs.3
title: Biot et al. 2024

description: MEI4, SYCP3 staining in synchronized mouse spermatocytes WT, Spo11KO, Prdm9KO, Iho1KO, Hormad1KO
gH2AX and RPA staining in juvenile mouse spermatocytes of WT and Prdm9Mei4KO
DOI: 10.17632/x855ph42cs.1
title: LINF_350016900

description: SAP domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/p2swf4v5hp.2
title: Light wavelength modulates search behavior performance in zebrafish

description: Waalkes et al
Visual systems have evolved to discriminate between different wavelengths of light. The ability to perceive color, or specific light wavelengths, is important as color conveys crucial information about both biotic and abiotic features in the environment. Indeed, different wavelengths of light can drive distinct patterns of activity in the vertebrate brain, yet what remains incompletely understood is whether distinct wavelengths can invoke etiologically relevant behavioral changes. To address how specific wavelengths in the visible spectrum modulate behavioral performance, we use larval zebrafish and a stereotypic light-search behavior. Prior work has shown that the cessation of light triggers a transitional light-search behavior, which we use to interrogate wavelength-dependent behavioral modulation. Using 8 narrow spectrum light sources in the visible range, we demonstrate that all wavelengths induce motor parameters consistent with search behavior, yet the magnitude of search behavior is spectrum sensitive and the underlying motor parameters are modulated in distinct patterns across short, medium, and long wavelengths. However, our data also establishes that not all motor features of search are impacted by wavelength. To define how wavelength modulates search performance, we performed additional assays with alternative wavelengths, dual wavelengths, and variable intensity. Last, we also tested blind larvae to resolve which components of wavelength dependent behavioral changes potentially include signaling from non-retinal photoreception. These findings have important implications as organisms can be exposed to varying wavelengths in laboratory and natural settings and therefore impose unique behavioral outputs.
DOI: 10.17632/2pr36j8fxy.1
title: LINF_350020700

description: Methyltransferase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/pt47g69tf7.1
title: LINF_350018300

description: Iron-sulfur assembly protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/mpgzfwr7fk.1
title: Electronic Data relating to “A comparative study of the modal response of additively and subtractively manufactured thin plates after thermal loading ” By M. Weihrauch, P. Lambert, J. Lambros, C. J. Sutcliffe, E. A. Patterson

description: Static, thermal, and displacement data files used to produce the results presented in “A comparative study of the modal response of additively and subtractively manufactured thin plates after thermal loading ”. 
The included data shows: 
1) Full field temperature data collected with a microbolometer during the heating and cooling of specimens. Temperature was recorded for 6 minutes of heating and 24 minutes of subsequent cooling after quartz lamps were turned off. Temperature data was collected for half an hour at two seconds intervals.
2) Z-Displacement data with rigid body motion removed of specimens, which were collected during the heating and cooling of specimens via digital image correlation (DIC). Data were collected for a total of half an hour at four second intervals. 
3) Static distance to a plane data collected via digital image correlation for all specimens before and after heat cycling. 
4) The first 6 modal shapes captured via digital image correlation of all specimens before and after heating.

The following folders are included:
1) Heat Cycling data: Z-RBMR data for approximately 6 minutes of heating and 24 minutes of cooling for all three test specimens contained in the "Z-RBMR Data" subfolder. Full-field temperature data for the same heating cooling cycle shown in "Z-RBMR Data" for each specimen can be found in the "Temperature Data" sub-folder.
2) Distance From a plane: Distance to plane pre- and post heating for all tested specimens can be found in this folder
3)Modal Shapes: The first 6 modal shapes pre- and post- heating for each of the tested specimens
DOI: 10.17632/svtrf2g449.1
title: Data for: Exploring Pyroelectricity, Thermal and Photochemical Switching in a Hybrid Organic-Inorganic Crystal by In-situ X-ray Diffraction

description: This repository provides additional data to accompany the paper:

"Exploring Pyroelectricity, Thermal and Photochemical Switching in a Hybrid Organic-Inorganic Crystal by In-situ X-ray Diffraction"

J. J. Morris, C. R. Bowen, B. A. Coulson, M. Eaton, P. R. Raithby, L. K. Saunders, J. M. Skelton, Q. Wang, M. R. Warren, Y. Zhang and L. Hatcher
Angewandte Chemie (2024), DOI: 10.1002/ange.202401552

This article includes a partial computational exploration of the structural potential energy surface of the hybrid organic-inorganic crystal examined in this work using the method of "following" the imaginary harmonic modes in the low-temperature parent structures collected in the presence and absence of an electric field. This repository makes available a full set of data from these calculations, including:

* Optimised structures;
* Harmonic lattice-dynamics calculations; and
* Data from the mode mapping calculations.

For details of how this data was generated, users are referred to the published article and supporting information. Brief details of file formats and links to further documentation are given in the included README file.
DOI: 10.17632/269yr8p4ch.2
title: Data for: Start-up and long-term operation of the nitrification process using landfill leachates in a pilot sequencing batch bioreactor

description: This dataset supports the article "Start-up and long-term operation of the nitrification process using landfill leachates in a pilot sequencing batch bioreactor".
- File "Operation data and respirometry.xls": Main operational values along the 61 weeks of operation and the specific oxidation rate at several ammonia and nitrite concentrations.
- File "Leachate characterization and heavy metals concentrations.xls": Physico-chemical parameters and heavy metals in the landfill leachate batches (12), and heavy metal composition in the bioreactor (medium filtered) and in the biomass.
- File "NGS": NGS results at two levels (L2 and L6) of the 4 samples analyzed.
DOI: 10.17632/smycsvmtzp.1
title: The influences of boundary layer thickness on the characteristics of saltation sand flow: large-eddy simulation

description: The data used in the article
DOI: 10.17632/35nsjgjrms.1
title: Brazilian dromedaries

description: This dataset was created for the analysis of the unsuccessful government-sponsored experiment to introduce and naturalize dromedaries (Camelus dromedarius) in the northeastern Brazilian province of Ceará, which occurred between 1857 and 1867. The objective of this paper is to argue that the naturalization plan was tailored following the principles of animal acclimatization while aimed at wider efforts by the Brazilian government to modernize national agriculture. In practice, it meant the employment of the dromedaries as livestock and pack animals, which also sought to address the logistics problems in the region. The dataset below compiled six types of information about Burlamaque: (1) relevant references to the scheme in the Bulletin de la Société impérial; (2) references to the scheme in the Presidential Reports of the province of Ceará; (3) in Ministerial Reports of the Empire cabinet; (4) Ministerial Reports of the Agriculture cabinet; (5) in the Imperial Budget; and (6) in articles published by Guilherme Capanema in the Diario do Rio de Janeiro.
DOI: 10.17632/smycsvmtzp.2
title: The influences of boundary layer thickness on the characteristics of saltation sand flow - a large-eddy simulation

description: The data used in the article
DOI: 10.17632/35nsjgjrms.2
title: Brazilian dromedaries

description: This dataset was created for the analysis of the unsuccessful government-sponsored experiment to introduce and naturalize dromedaries (Camelus dromedarius) in the northeastern Brazilian province of Ceará, which occurred between 1857 and 1867. The objective of this paper is to argue that the naturalization plan was tailored following the principles of animal acclimatization while aimed at wider efforts by the Brazilian government to modernize national agriculture. In practice, it meant the employment of the dromedaries as livestock and pack animals, which also sought to address the logistics problems in the region. The dataset below compiled six types of information about Burlamaque: (1) relevant references to the scheme in the Bulletin de la Société impérial; (2) references to the scheme in the Presidential Reports of the province of Ceará; (3) in Ministerial Reports of the Empire cabinet; (4) Ministerial Reports of the Agriculture cabinet; (5) in the Imperial Budget; and (6) in articles published by Guilherme Capanema in the Diario do Rio de Janeiro.
DOI: 10.17632/hr8v64myns.2
title: From employee to entrepreneur: the role of unemployment risk

description: The files explain the main data and the code that can be used for the replication of the paper: “From employee to entrepreneur: The role of unemployment risk” by Ai Jun Hou, Sara Jonsson, Xiaoyang Li, and Qinglin Ouyang.
DOI: 10.17632/kvr3bm64pv.2
title: The MRI dataset of "Moderate Aerobic Exercise in combination with metformin in Intermuscular Adipose Tissue (IMAT) and its Functional MRI in Non-Streptozotocin Prediabetic Rats" (part2)

description: The MRI dataset of "Moderate Aerobic Exercise in combination with metformin in Intermuscular Adipose Tissue (IMAT) and its Functional MRI in Non-Streptozotocin Prediabetic Rats" (part2)
DOI: 10.17632/jk9nv3ss3k.2
title: Immigrants, Legal Status, and Illegal Trade

description: This repository contains the code and data needed to reproduce, "Immigrants, Legal Status, and Illegal Trade," to be published in the Journal of International Economics. The paper studies how immigrants and immigration policy affect illegal drug trafficking. Due to data-holder restrictions, this repository excludes Spain's EDADES dataset, though all other raw datasets are uploaded here. See the readme file below for additional information.
DOI: 10.17632/xhh2ktks9g.2
title: Deformed pseudotachylytes of the Silvretta basal nappe - rheology dependent on the distance to the propagating thrust tip

description: Primary data used for submitting the research article "Deformed pseudotachylytes of the Silvretta basal nappe - rheology dependent on the distance to the propagating thrust tip" is preserved and available here.
DOI: 10.17632/wd9367jyvs.4
title: Biot et al. 2024

description: MEI4, SYCP3 staining in synchronized mouse spermatocytes WT, Spo11KO, Prdm9KO, Iho1KO, Hormad1KO
gH2AX and RPA staining in juvenile mouse spermatocytes of WT and Prdm9Mei4KO, measures of number and intensities of foci
DOI: 10.17632/hc2n23vbjs.1
title: SEM-EDS Bacteria image library

description: In-Vitro Pb Uptake by Bacteria in Liquid Cultures-Scanning Electron Microscopy (SEM-EDX) Analysis. B. paramycoides, B. proteolityticus and B. wiedmannii were able to immobilise Pb on their cell wall.
DOI: 10.17632/m2mttjjt8g.1
title: SEM-EDX Microplastics image library

description: This work present SEM-EDX characterisation of Microplastics. Scanning electron microscopy (SEM) can give fast information of morphology, ageing, and origin of the examined samples as it provides high-resolution data of surface state and the qualitative information about the chemical composition (by EDS). The microplastics observed were rich in C, Fe, Si, Al and Co. Cracks, polymer blends and overlays were identified.
DOI: 10.15468/dl.c6cenv
title: Occurrence Download

description: A dataset containing 130052 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (South Africa, Lesotho, Eswatini)",
 "TaxonKey is one of (Dryoscopus cubla (Latham, 1802))",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "OccurrenceStatus is Present",
 "DistanceFromCentroidInMeters is greater than or equal to 2000"
 ]
}

 The dataset includes 130052 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004333-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/ycm5dpgc67.1
title: Data and code: Prediction of Paroxysmal Atrial Fibrillation based on Time- frequency Analysis Network and related studies (Manuscript)

description: These data and codes were used in the submitted manuscript "Prediction of Paroxysmal Atrial Fibrillation based on Time- frequency Analysis Network and related studies", which includes all data and codes for this study.
The AFPDB database used in this study is a public dataset and therefore not uploaded here, the download link is https://physionet.org/content/afpdb/1.0.0/.

Data: It contains the clinical data from Shandong Provincial Hospital (SPHD) used in this study, and the data have been removed from sensitive information. It includes the original .edt data file and the .csv annotation file, all 24h ECG records. Since Mendeley only has 10G of space available, only a portion of the raw data were uploaded. To avoid lack of space and to ensure that all data is uploaded, we also upload the processed .m data files, which are all the data for this study. 'data_n.m' and 'data_p.m' are data from the AFPDB database, and 'data_paf.m' and 'data_nor.m' are the data in SPHD. ' T-Fmaps' folder is the generated ECG time-frequency map and RR interval time-frequency map.

Code: 'edtReader.m' is the code to read the .edt file; 'ConstructTFANet.mlx' is the code to construct TFANet; 'TFANet.m ' is the TFANet network; 'PAFpredict.m' is the code for prediction experiments; 'PAFpredictcross' is the code for cross-patient experiments. No 5 cross-patient experiments were uploaded separately, and only the input data needed to be changed at runtime. The remaining files are functions for denoising and normalization, functions for generating time-frequency maps, code for predicting PAF using RR intervals, predicting PAF based on different time durations, predicting PAF using three classical CNN models, deep learning visualization, and so on. The running environment is Matlab R2022b.
DOI: 10.17632/6fhp27h9xz.1
title: Data for Non-Neotissue Constituents as Underestimated Confounders in the Assessment of Tissue Engineered Constructs by Near-Infrared Spectroscopy

description: Datasets, orange workflow file and R scripts necessary to replicate the results of the study "Non-Neotissue Constituents as Underestimated Confounders in the Assessment of Tissue Engineered Constructs by Near-Infrared Spectroscopy".
S1-Samples.csv: The details of the samples used in the study.
S2-Spectra.csv: The labeled spectra used for data analysis.
S3-OrangeWorkFlow.ows: The orange workflow file used for primary machine learning as mentioned in section 2.3 in the study. Requires the software Quasar or Orange 3.33 with the Quasar add-on (Bioinformatics Lab, University of Ljubljana, Slovenia). Upload the S2-Spectra.csv file in the "file" widget for the analysis to start (may require manual intiation in some widgets too).
S4.Orangeworkflows.pdf: Detailed overview of the S3-OrangeWorkFlow.ows.
S5-Propensity Score Matching.zip: Files used for Propensity Score Matching mentioned in section 2.3.2
S6-matchedmatrix.csv: The matched pair from Propensity Score Matching produced from "S5-Propensity Score Matching.zip" and used for controlling the models in "S3-OrangeWorkFlow.ows" and in "S7-MCCVofSVM.Rmd" as described in section 2.3.2.
S7-MCCVofSVM.Rmd: Used for Monte Carlo cross-validation mentioned in section 2.3.2 and produce figure 4
S8-ConfoundersPredictionPerformances.xlsx: The machine learning cross-validation results for models classifying the constructs according to the non-neotissue constituents. Table 3 of the study presents summary of selected metrics form these spreadsheet.
S9-ControlledVsUncontrolledPerformances.xlsx: The comprehensive results showing all metrics and the statistical analysis results of the controlled vs the uncontrolled models mentioned in section 2.3.2 and described in section 3.2 
S10- Statistics: Files and results of the statistical analysis described in section 3.2 and presented in Table 4