cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3628510
title: Java code snippets from SOTorrent v23-09-2019

description: These data is an extraction of the Java code snippets from the snapshot in SOTorrent dated in 23-09-2019. The CSV file contains five fields: Question_ID, Answer_ID, Body, Tags and Score.
DOI: 10.5281/zenodo.3628511
title: Java code snippets from SOTorrent v23-09-2019

description: These data is an extraction of the Java code snippets from the snapshot in SOTorrent dated in 23-09-2019. The CSV file contains five fields: Question_ID, Answer_ID, Body, Tags and Score.
DOI: 10.5286/isis.e.rb1920356
title: Neutron reflectometry of a contact dermatitis stratum corneum skin model in contact with oxidized fragrance molecules

description: Contact allergy (CA) is an increasing problem, affecting 15-20% of the population worldwide. Fragrance molecules (FMs) are the second most common cause of allergic contact dermatitis (ACD), however, allergy tests have shown that CA is often caused by the presence of oxidised molecules (DPs) from air exposure of the aged consumer product. Allergens must pass through the skins outer barrier, the stratum corneum (SC), to provoke ACD. We have developed an SC model, which is simple, allowing changes to be interpreted mechanistically, and realistic, by presenting a similar structure and molecular composition as the SC tissue. The SC model will be exposed to two common fragrances and their DPs, known to cause allergic responses. We hope to investigate the effect of DPs on the lipid organisation in the SC, and understand the underlying mechanism of the allergic response in patients with CA.
DOI: 10.5286/isis.e.rb1920356-1
title: Neutron reflectometry of a contact dermatitis stratum corneum skin model in contact with oxidized fragrance molecules

description: Contact allergy (CA) is an increasing problem, affecting 15-20% of the population worldwide. Fragrance molecules (FMs) are the second most common cause of allergic contact dermatitis (ACD), however, allergy tests have shown that CA is often caused by the presence of oxidised molecules (DPs) from air exposure of the aged consumer product. Allergens must pass through the skins outer barrier, the stratum corneum (SC), to provoke ACD. We have developed an SC model, which is simple, allowing changes to be interpreted mechanistically, and realistic, by presenting a similar structure and molecular composition as the SC tissue. The SC model will be exposed to two common fragrances and their DPs, known to cause allergic responses. We hope to investigate the effect of DPs on the lipid organisation in the SC, and understand the underlying mechanism of the allergic response in patients with CA.
DOI: 10.5286/isis.e.rb2010740
title: Optimisation of Experimental Conditions for the Study of Anionic Self-Assembled Floating Supported Bilayers

description: We have developed a Self-assembled floating supported membrane sample system comprised of unsaturated phospholipid bilayers held ~1nm from a PEGylated charged alkane thiol SAM through an interplay of weak attractive and strong repulsive forces. Here, building on previous results we wish to gain an understanding of the wider factors governing this sample type and its application in structural and biophysical studies. In particular the factors effecting the SAM-to-bilayer distance and role of cations in this sample system. In the proposed research activities, and through a comparing three differing bilayer types deposited onto three differing SAMs, we wish to examine the how an increase in anionic lipids changes the behaviour of these samples under differing solution conditions and examine the effect of changing the level of PEGylation and charge on the SAM surface.
DOI: 10.5286/isis.e.rb2010740-1
title: Optimisation of Experimental Conditions for the Study of Anionic Self-Assembled Floating Supported Bilayers

description: We have developed a Self-assembled floating supported membrane sample system comprised of unsaturated phospholipid bilayers held ~1nm from a PEGylated charged alkane thiol SAM through an interplay of weak attractive and strong repulsive forces. Here, building on previous results we wish to gain an understanding of the wider factors governing this sample type and its application in structural and biophysical studies. In particular the factors effecting the SAM-to-bilayer distance and role of cations in this sample system. In the proposed research activities, and through a comparing three differing bilayer types deposited onto three differing SAMs, we wish to examine the how an increase in anionic lipids changes the behaviour of these samples under differing solution conditions and examine the effect of changing the level of PEGylation and charge on the SAM surface.
DOI: 10.6084/m9.figshare.11742159
title: Additional file 3 of FGFR3 signaling and function in triple negative breast cancer

description: Additional file 2: Table S1. Quantifiable FGFR tyrosine phosphorylated peptide expression (log2) identified across 24 TNBC cell lines Table S2. Quantifiable tyrosine phosphorylated peptide expression (log2) specific to SUM185PE cell line. Tyrosine phosphorylation of TACC3 (highlighted in pink) only occurs in SUM185PE
DOI: 10.21227/d5fr-xa14
title: Cophy: Counterfactual Learning of Physical Dynamics

description: Understanding causes and effects in mechanical systems is an essential component of reasoning in the physical world. This work poses a new problem of counterfactual learning of object mechanics from visual input. We develop the COPHY benchmark to assess the capacity of the state-of-the-art models for causal physical reasoning in a synthetic 3D environment and propose a model for learning the physical dynamics in a counterfactual setting. Having observed a mechanical experiment that involves, for example, a falling tower of blocks, a set of bouncing balls or colliding objects, we learn to predict how its outcome is affected by an arbitrary intervention on its initial conditions, such as displacing one of the objects in the scene. The alternative future is predicted given the altered past and a latent representation of the confounders learned by the model in an end-to-end fashion with no supervision. We compare against feedforward video prediction baselines and show how observing alternative experiences allows the network to capture latent physical properties of the environment, which results in significantly more accurate predictions at the level of super human performance.
DOI: 10.6084/m9.figshare.11742159.v1
title: Additional file 3 of FGFR3 signaling and function in triple negative breast cancer

description: Additional file 2: Table S1. Quantifiable FGFR tyrosine phosphorylated peptide expression (log2) identified across 24 TNBC cell lines Table S2. Quantifiable tyrosine phosphorylated peptide expression (log2) specific to SUM185PE cell line. Tyrosine phosphorylation of TACC3 (highlighted in pink) only occurs in SUM185PE
DOI: 10.17632/9gsp333f8d.1
title: Data for: ABBABB or 1212: Abstract language facilitates children’s early patterning skills

description: This file contains the raw data for the Pattern Labels research experiment reported in manuscript titled, "ABBABB or 1212: Abstract language facilitates children’s early patterning skills." July 2019.
DOI: 10.3886/e116192v1-21997
title: Replication data for: Alcohol and Self-Control: A Field Experiment in India

description: This paper studies alcohol consumption among low-income workers in India. In a 3-week field experiment, the majority of 229 cycle-rickshaw drivers were willing to forgo substantial monetary payments in order to set incentives for themselves to remain sober, thus exhibiting demand for commitment to sobriety. Randomly receiving sobriety incentives significantly reduced daytime drinking while leaving overall drinking unchanged. I find no evidence of higher daytime sobriety significantly changing labor supply, productivity, or earnings. In contrast, increasing sobriety raised savings by 50 percent, an effect that does not appear to be solely explained by changes in income net of alcohol expenditures.
DOI: 10.5519/qd.cyduxj09
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (108 records)
DOI: 10.17632/3dpvb6cy3n.1
title: Demographics of Dermatologist Sample

description: Distribution of sex and years of experience of dermatologists sampled
DOI: 10.17632/gdb3jfwtsb.2
title: Data for: Calibrating bacterial tetraether distributions towards in situ soil temperature and application to a loess-paleosol sequence

description: Environmental data and brGDGT fractional abundances for 149 Chinese soils.
DOI: 10.17632/kgkxcdy63x.1
title: Data for: Resource partitioning among three coeval proboscidean taxa (Anancus capensis, Mammuthus subplanifrons, Loxodonta cookei) from the South African early Pliocene locality of Langebaanweg E Quarry

description: This data set is a summary of the stable isotope analyses done on the tooth enamel of the proboscideans from the early Pliocene fossil site of Langebaanweg, South Africa
DOI: 10.5525/gla.researchdata.954
title: Adiabatic frequency shifting in epsilon near zero materials: The role of group velocity

description: Data relevant to the publication, including all the published figures.
DOI: 10.17632/3c628btjy2.1
title: Power Outage data for US

description: The aim of the project is to detect power outages in real-time in United States by utilizing IP scans done periodically. For each scan, the active IP addresses are stored. Based on the time series data for each IP, a reliability score is computed for each IP. The reliability score corresponds to the correlation possibility between the IP address and power outage in the county. The geographical location of the IP address is obtained through the MaxMind tool. The scanning was done 4 times every day for the last 6 months. Therefore, we have the data of active IP addresses and the reliability scores of each IP address for every scan. Given the huge size of the dataset, partial data is being uploaded here. For access to the entire dataset, please contact the authors.
DOI: 10.17632/95mr7pr8rj.3
title: Two Daily Weather Datasets: Chiang Mai International Airport and Theodore Francis Green State Airport

description: Two daily weather datasets for experimenting data-driven models on two different weather types: 1. Chiang Mai International Airport, Chiang Mai, Thailand from January 1st 1998 to July 31st 2019. The data were acquired from the station via personal communication. The following files are provided: - chiang_mai_1998-2019_raw.csv : the raw data without any preprocessing. Note that some of the data are missing. - chiang_mai_1998-2019.csv : the preprocessed data: the dates and redundant variables were removed, the missing data were imputed with MICE algorithm and all units were changed to SI units. 2. Theodore Francis Green State Airport, Providence, RI from January 1st 2006 to October 31st 2019. The data were acquired from the National Oceanic and Atmospheric Administration (https://www.ncdc.noaa.gov/cdo-web/datatools/lcd). The following files are provided: - providence_2006-2019_raw.csv : the raw data with redundant variables removed. Some of the data are missing. - providence_2006-2019.csv : the preprocessed data: the dates were removed, the missing data were imputed with MICE algorithm and all units were changed to SI units.
DOI: 10.15129/53077534-9b4e-4c6a-b46b-6518e046c198
title: Data for: "Scheduling of Space to Ground Quantum Key Distribution"

description: The dataset contains a suite of optimization problems whose objective is to effectively schedule communication between a satellite and a network of ground stations located in the United Kingdom. The mathematical formulation of the problem and the computational results obtained by solving the model on the problem instances from the dataset are explained in the article: ``Scheduling of Space to Ground Quantum Key Distribution''. The dataset includes a list of communication windows with each ground station for a given satellite configuration. Description of each communication window details: cloud cover information, the elevation angle between the satellite and a ground station, and the estimated transfer rate of quantum keys at a given time. Full details on the data structure are available in the Readme file provided. Cloud cover information was obtained by preprocessing datasets obtained from OpenWeatherMap (https://openweathermap.org/) on Open Data Commons Open Database License (ODbL).
DOI: 10.20393/db81b4f7-261a-40b0-aff2-647646e17ce4
title: Nephrops Underwater TV Survey FU20-21 Labadie, Jones and Cockburn Banks
DOI: 10.13140/rg.2.2.13884.18562
title: Economic Resilience Vs Global Innovation Index-2017
DOI: 10.17632/7jwk59kdmw.2
title: Data of improving the methane productivity of anaerobic digestion using aqueous extracts from municipal solid waste incinerator ash

description: Raw Illumina sequence data for 16S RNA and qimme2 files. Data collected from digetate of two-stage mesophilic lab rectors digesting OFMSW and amended with mineral waste additives.
DOI: 10.3886/e113751v1-21981
title: Replication data for: Ability, Gender, and Performance Standards: Evidence from Academic Probation

description: We use a regression discontinuity design to examine students' responses to being placed on academic probation. Consistent with a model of introducing performance standards, we find that being placed on probation at the end of the first year discourages some students from returning to school while improving the GPAs of those who do. We find heterogeneous responses across prior academic performance, gender, and native language, and discuss these results within the context of the model. We also find negative effects on graduation rates, particularly for students with the highest high school grades. (JEL I23, J16)
DOI: 10.7942/c2ph20
title: P06W 2017
DOI: 10.17632/db8tg8gk9b.3
title: Spiritual Leadership Data set

description: Spiritual leadership data set in higher education
DOI: 10.17632/tvjbf5d8rh.1
title: Hold the Prediction! Sensory Information Increases Response Inhibition during Time to Collision Estimation

description: Data for sample size calculation and main analysis. Supplementary tables
DOI: 10.5281/zenodo.3628747
title: Computer-aided solvent mixture design for the crystallisation and isolation of mefenamic acid

description: The files contain the MINLP formulations presented in this publication. The MINLP problems are implemented and solved in GAMS version 28.2.0, using SBB, a local branch-&-bound MINLP solver.
DOI: 10.17632/jnm2td6xxn.1
title: video of MSI

description: The concomitant change of the pH as acquired by the pH meter and the related color change of the sensor membrane
DOI: 10.20393/deaa8fe6-d904-4bc7-a264-d7d4c564901d
title: Atlantic Ocean Research Alliance (AORA) Bathymetry Data

description: The Atlantic Ocean Research Alliance (AORA) between Canada, the European Union and the United States was launched by the signatories of the Galway Statement on Atlantic Ocean Cooperation in May 2013. This dataset is bathymetry data that was collected on various surveys from 2015 to 2018 on the Celtic Explorer during transits across the Atlantic Ocean, primarily from St. John's Newfoundland, Canada to Galway, Ireland. The data contributes to the Seabed Mapping key area of the AORA project, which aims to map the remainder of the Atlantic Ocean. The bathymetry data is collected using a deep water multibeam sonar system called a Konsberg EM302.
DOI: 10.5281/zenodo.3629221
title: Detecting Changes in the Caenorhabditis elegans Intestinal Environment Using an Engineered Bacterial Biosensor

description: Data for the figures in the manuscript <br> https://pubs.acs.org/doi/10.1021/acssynbio.9b00166 Abstract:<br> <em>Caenorhabditis elegans</em> has become a key model organism within biology. In particular, the transparent gut, rapid growing time, and ability to create a defined gut microbiota make it an ideal candidate organism for understanding and engineering the host microbiota. Here we present the development of an experimental model that can be used to characterize whole-cell bacterial biosensors <em>in vivo</em>. A dual-plasmid sensor system responding to isopropyl β-d-1-thiogalactopyranoside was developed and fully characterized <em>in vitro</em>. Subsequently, we show that the sensor was capable of detecting and reporting on changes in the intestinal environment of <em>C. elegans</em> after introducing an exogenous inducer into the environment. The protocols presented here may be used to aid the rational design of engineered bacterial circuits, primarily for diagnostic applications. In addition, the model system may serve to reduce the use of current animal models and aid in the exploration of complex questions within general nematode and host–microbe biology.
DOI: 10.5281/zenodo.3629222
title: Detecting Changes in the Caenorhabditis elegans Intestinal Environment Using an Engineered Bacterial Biosensor

description: Data for the figures in the manuscript <br> https://pubs.acs.org/doi/10.1021/acssynbio.9b00166 Abstract:<br> <em>Caenorhabditis elegans</em> has become a key model organism within biology. In particular, the transparent gut, rapid growing time, and ability to create a defined gut microbiota make it an ideal candidate organism for understanding and engineering the host microbiota. Here we present the development of an experimental model that can be used to characterize whole-cell bacterial biosensors <em>in vivo</em>. A dual-plasmid sensor system responding to isopropyl β-d-1-thiogalactopyranoside was developed and fully characterized <em>in vitro</em>. Subsequently, we show that the sensor was capable of detecting and reporting on changes in the intestinal environment of <em>C. elegans</em> after introducing an exogenous inducer into the environment. The protocols presented here may be used to aid the rational design of engineered bacterial circuits, primarily for diagnostic applications. In addition, the model system may serve to reduce the use of current animal models and aid in the exploration of complex questions within general nematode and host–microbe biology.
DOI: 10.5281/zenodo.3629239
title: beta-diketones

description: This data set was used to examine the reactive dynamics and<br> spectroscopic properties of three beta-diketones: malonaldehyde (MA,<br> propandial), acetoacetaldehyde (AAA, 3- oxobutanal) and acetylacetone<br> (AcAc, pentan-2,4-dion), in a neural network based manner. The data<br> set contains different geometries for the three molecules as well as<br> for substructures (Amons [1]). In total the data set contains 71208 geometries with reference<br> energies, forces and dipole moments calculated at the MP2/aug-cc-pVTZ<br> level of theory calculated using the MOLPRO 2018.2.0 [2]. For more details, see https://arxiv.org/abs/1911.09475 [1] Huang, B.; von Lilienfeld, O.A., arXiv:1707.04146<br> [2] Werner, H.-J.; Knowles, P. J.; Knizia, G.; Manby, F. R.; Schütz, M.; et al.<br> https://www.molpro.net, 2018.2.0
DOI: 10.7942/c2f08x
title: S04P 2018
DOI: 10.7942/c2jq02
title: P06W 2017
DOI: 10.6084/m9.figshare.11733354.v7
title: Simulated significant wave height (3-hourly, 1850.01-2014.12) from FIO-ESM v2.0 historical experiment r1i1p1f1

description: Simulated significant wave height (3-hourly, 1850.01-2014.12) from FIO-ESM v2.0 historical experiment r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.7910/dvn/tzojbu/mvhegg
title: EdgeBinaryNoPRI.tab

description: :unav
DOI: 10.7942/c29660
title: I06 2019
DOI: 10.5281/zenodo.3608379
title: Quantifying influences on intragenomic mutation rate: data files

description: Raw, intermediate and final datasets associated with the the paper "Quantifying influences on intragenomic mutation rate". Code will be made available at https://github.com/helmutsimon/ProbPolymorphism. Refer to README.md at this site.
DOI: 10.5281/zenodo.3628750
title: KeplerTestingSet

description: This is a dataset to test the trained random forest model!
DOI: 10.5286/isis.e.rb1910368
title: In-situ neutron powder diffraction studies of the structural changes on cycling a Na-ion battery over the 1st, 10th and 100th cycle

description: Faradion Ltd. is the world leader in non-aqueous Na-ion technology; a more sustainable, cost-effective and safer energy storage solution than commercially-used Li-ion batteries. Previously considered to be substantially inferior in performance to Li-ion batteries, Na-ion batteries have now reached higher energy densities than commercial lithium iron phosphate batteries at operating temperatures between -20C and +60C, However, the cycle life requires improvement in order to meet commercial standards. We request 3 days on POLARIS to study the structural phase changes which occur on cycling a Na-ion cathode material and compare this to electrochemical data to propose and test novel ideas of improving cycle life in order to meet commercial standards.
DOI: 10.5286/isis.e.rb1910368-1
title: In-situ neutron powder diffraction studies of the structural changes on cycling a Na-ion battery over the 1st, 10th and 100th cycle

description: Faradion Ltd. is the world leader in non-aqueous Na-ion technology; a more sustainable, cost-effective and safer energy storage solution than commercially-used Li-ion batteries. Previously considered to be substantially inferior in performance to Li-ion batteries, Na-ion batteries have now reached higher energy densities than commercial lithium iron phosphate batteries at operating temperatures between -20C and +60C, However, the cycle life requires improvement in order to meet commercial standards. We request 3 days on POLARIS to study the structural phase changes which occur on cycling a Na-ion cathode material and compare this to electrochemical data to propose and test novel ideas of improving cycle life in order to meet commercial standards.
DOI: 10.7942/c21t0f
title: P18 2016
DOI: 10.17632/4zvs6jwgdt.1
title: Partial melting of the lower oceanic crust: implications for tracing the slab component in the source of mid-ocean ridge and intraplate basalts

description: 1. Four figures that are supplementary to this study; 2. Major and trace element composition data (12 tables) for this study; 3. ICP-SF-MS data quality file
DOI: 10.17632/4zvs6jwgdt.2
title: Partial melting of the lower oceanic crust: implications for tracing the slab component in the source of mid-ocean ridge and intraplate basalts

description: 1. Four figures supplementary to this study; 2. Major and trace element composition data (12 tables) for this study; 3. ICP-SF-MS data quality file
DOI: 10.17632/6hntf79j2d.1
title: Data for: Sandwiched visual stimuli are perceived as shorter than the stimulus alone

description: Raw data for the paper "Sandwiched visual stimuli are perceived as shorter than the stimulus alone"
DOI: 10.18112/openneuro.ds002080.v1.0.1
title: BTC_postop
DOI: 10.5281/zenodo.3608378
title: Quantifying influences on intragenomic mutation rate: data files

description: Raw, intermediate and final datasets associated with the the paper "Quantifying influences on intragenomic mutation rate". Code will be made available at https://github.com/helmutsimon/ProbPolymorphism. Refer to README.md at this site.
description: Data for all autosomes now included.
DOI: 10.7910/dvn/k6qu2j/1g8wzd
title: READ ME.docx

description: :unav
DOI: 10.7910/dvn/k6qu2j/4znscb
title: log simulations Table B2 Column 3.smcl

description: :unav
DOI: 10.7910/dvn/k6qu2j/jgos2g
title: individual_dataset_ComolaPrina.tab

description: :unav
DOI: 10.7910/dvn/k6qu2j/lfhkcv
title: dyadic.ado

description: :unav
DOI: 10.7910/dvn/k6qu2j/rwznay
title: dofile ComolaPrina.do

description: :unav
DOI: 10.7910/dvn/k6qu2j/sobwaz
title: log simulations Table B1 Column 3.smcl

description: :unav
DOI: 10.7910/dvn/k6qu2j/zypgkh
title: log dofile ComolaPrina.smcl

description: :unav
DOI: 10.7910/dvn/uiccpb/afv5y3
title: Supplt 2_Data extraction tool.docx

description: :unav
DOI: 10.7910/dvn/uiccpb/sgdayj
title: Supplt 3_PRISMA checklist.doc

description: :unav