cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.1409474
title: Diffraction images of a crystal of a SH3 domain

description: Data were collected on a single crystal at the beamline i03 of the Diamond synchrotron facility (Didcot, UK) using radiation of 0.99998 Å wavelength and a PILATUS3 6M detector. The dataset consists of 3600 images (0.1 degree oscillation per image). Data extend to ~1.1 Å resolution.
description: We thank Diamond Light Source for access to synchrotron radiation facilities (proposal mx14739), and the staff of beamline I03 for assistance with crystal testing and data collection. This work was supported by the Council of Education of Junta de Castilla y León (Spain) and the European Regional Development Fund, grant SA017U16.
DOI: 10.18739/a2m03xw8k
title: Arctic Science, Engineering and Education for Sustainability-Land Cover Land Use Change Prudhoe Bay Alaska Airport Site road effects, Summer 2015
DOI: 10.5063/f1xg9pc8
title: Characterization of permit transfers between salmon permit holders in Alaska

description: The Commercial Fisheries Entry Commision (CFEC) is an independent, autonomous agency of the State of Alaska which regulates entry into Alaska's commercial fisheries. The CFEC is committed to promoting conservation and sustained-yield management of Alaska's unique fishery resources and boosting economic stability among fishermen and their dependents. To ensure effective management of commercial fisheries, all vessels used for commercial fishing or related activities must be licensed by the CFEC. This includes fishing vessels, tenders, packers, processors, transporter vessels, and seine skiffs. The CFEC is responsible for leasing all commercial fishing permits including permits for limited-entry fisheries. Limited-entry fisheries include all state salmon fisheries, most herring fisheries, and various other fisheries. Here, permit transfers data is presented by community of residence of the permit holder for salmon permit holders in Alaska. The transfersByCommunity.csv file shows the number of transfers that occurred by community by hear. The transfersRelationshipByCommunity.csv table shows the type of transfer (sale, gift, trade, other) and the relationship between the interacting parties (friend/partner, immediate family, or other relative).
DOI: 10.5066/p9yfet78
title: Groundwater-Surface Water Interactions in Ellerbe Creek in Durham, North Carolina, 2016-2018

description: A hydrologic study involving the investigation of groundwater-surface water interactions along Ellerbe Creek, a major tributary to upper Falls Lake, was conducted in order to determine if groundwater is a likely source of nitrate input to the stream. Groundwater-surface water interactions were characterized by synoptic streamflow measurements, groundwater-level monitoring, hydrograph-separation methods and a continuous streambed temperature survey to aid in the collection and interpretation of water-quality samples along the stream.
DOI: 10.5281/zenodo.1411459
title: ROS-specific Huntingtin Interactions: In vitro poly-ADP ribose binding assays

description: Poly-ADP ribose overlay assay with purified huntingtin protein to test ability of full-length and fragment huntingtin to bind poly-ADP ribose.
description: This work is funded by the HDSA Berman/Topper HD Career Development Fellowship.
DOI: 10.5281/zenodo.1411460
title: ROS-specific Huntingtin Interactions: In vitro poly-ADP ribose binding assays

description: Poly-ADP ribose overlay assay with purified huntingtin protein to test ability of full-length and fragment huntingtin to bind poly-ADP ribose.
description: This work is funded by the HDSA Berman/Topper HD Career Development Fellowship.
DOI: 10.6084/m9.figshare.7059284.v1
title: Micro-geographic genetic differentiation and estimation of flight range

description: Raw microsatellite genotypes (GENEPOP format) and analysis input files (Geneland, Structure, Barrier, Arlequin, Mantel and Genalex)<br>
DOI: 10.14469/hpc/4705
title: Fluoridation, reactant using O 6-311_G(d,p) -1566.777270

description: Gaussian Calculation
DOI: 10.14469/hpc/4706
title: Fluoridation, TS using S -1889.717615

description: Gaussian Calculation
DOI: 10.14469/hpc/4707
title: Fluoridation, TS using S NICS(0) and NICS(1) =- 8.8509

description: Gaussian Calculation
DOI: 10.5063/f1n29v51
title: Hurley et al LTF hybrid PVL sperm

description: Speciation research has largely overlooked reproductive barriers acting between copulation and the formation of the zygote (i.e. post-mating, pre-zygotic [PMPZ] barriers), especially in internally fertilizing vertebrates. Nonetheless, it is becoming clear that PMPZ reproductive barriers can play a role in the formation and maintenance of species boundaries. We investigated sperm-egg interactions in the recently diverged subspecies pair of the long-tailed finch, Poephila acuticauda acuticauda and P. a. hecki, to explore potential PMPZ barriers. Specifically, we compared the number of sperm reaching the perivitelline layer (PVL) of the ova, and hence the site of fertilization, in both intra- and inter-subspecies pairings and pairings of F1 hybrid adults with one parental subspecies. Although we found no difference in PVL sperm number among intra- and inter-subspecific pairs, a significantly lower number of sperm reached the site of fertilization in a backcross pairing. As low numbers of PVL sperm appear to be associated with low fertilization success in birds, our findings offer insight into the potential role of post-copulatory processes in limiting gene flow between the subspecies and may help explain the relatively narrow hybrid zone that exists in the wild in this species. Though further work is needed to gain a comprehensive understanding of the morphological, physiological, and molecular mechanisms underlying our results, our study supports the role of PMPZ reproductive barriers in avian speciation, even in recently diverged taxa, that may not yet be fully genetically incompatible.
DOI: 10.15139/s3/15kgnb
title: Replication Data for: Their Boot in Our Face No Longer? Administrative Sectionalism and Resistance to Federal Authority in the U.S. South

description: What explains state agency resistance to actions taken by their federal counterparts? And do sectional tensions make state bureaucratic nonacquiescence particularly likely in the U.S. South? We theorize that state resistance to federal administrative policy is more likely among Southern state bureaus due to administrative sectionalism. We argue that state agencies can and do resist federal administrative orders independent of other political constraints. This study is among the first to consider the policy consequences of sectionalism in state bureaucracies. We test our claims by employing a mixed methods approach that analyzes each instance of litigation and intervention by state bureaucrats in opposition to actions and orders by the Federal Energy Regulatory Commission (FERC) from 2010–2017. We find that, all else equal, state agency resistance to federal utility policy is more than four times as likely among Southern utility regulators. This research has important normative implications for administrative politics as it suggests agencies with putatively apolitical policy jurisdiction have political preferences driven by sectional tension.
DOI: 10.18739/a26t0gw0r
title: Micropulse lidar (MPL) measurements taken at Summit Station, Greenland, 2017
DOI: 10.18739/a2bk16p3d
title: Collaborative Research: Integrated High Resolution Chemical and Biological Measurements on the Deep WAIS Divide Core
DOI: 10.18739/a2g73735q
title: Vanillic acid concentrations from ice cores, Tunu, Northeastern Greenland, 268-2013
DOI: 10.21223/p3/vreymx
title: Replication Data for: Potato crop health quality and yield losses in Ecuador

description: A survey and a field experiment were performed in Ecuador to: (1) determine the incidence and severity of seed borne pests affecting the seed health quality, (2) understand how altitude and seed sources affect seed health quality, and (3) identify the influence of the seed health quality on the yield. The survey was performed, in 2010, in three provinces: Bolivar, Chimborazo and Tungurahua at an altitude between 2751 and 3634 meters above the sea level (m.a.s.l). It consisted on collecting tubers from farmers' fields, and assesing the prevalence of seed borne pests, and mechanical and physiological problems per tuber collected. These tubers were later planted (October 2010-December 2011) in a field experiment at CIP-Quito (altitude of 3058 m.a.s.l). Growth variables, yield and production quality were registered per tuber at harvest. The general characteristics of farmer fields (e.g., geographic information, farmer's seed sources, potato varieties and field sizes) are described in the "Fields_Geographic_locations" sheet, and the detailed information about the survey and field experiment is available in the "Losses_yield_determination" sheet.
DOI: 10.5063/f1h993d7
title: National Parks Service Southeast Alaska Network Stream Temperature Monitoring of the Indian River, Salmon River, and Taiya River 2010 - 2016

description: This dataset includes data on hourly water temperature (C) for the Indian River (Sitka), Salmon River (Glacier Bay National Park and Preserve), and Taiya River (Klondike Gold Rush National Historical Park). These data were collected each year from 2010 to 2016, ranging from early spring/summer through the end of fall. Stream temperature can be an indicator of aquatic and terrestrial ecosystem health and one of twelve priority Vital Signs in the National Park Service’s Southeast Alaska Network (SEAN), which includes Glacier Bay National Park and Preserve, Klondike Gold Rush National Historical Park, and Sitka National Historical Park. This dataset in particular is used to help inform management relevant topics such as: monitoring of the frequency of hypoxic events in the Indian River, describing the effects of a changing climate on the physical and chemical properties of park waters, and assessing whether state and federal water quality targets are being met.
DOI: 10.5066/p90cefrd
title: Chloride in water, metals in sediment and amphibian tissues and amphibian capture information from wetlands in the Williston Basin of Montana and North Dakota, 2015-2017

description: The data presented includes chloride concentration and specific conductance in surface water collected from 33 wetlands in the Williston Basin of Montana and North Dakota, 2015-2017 as well as count data for three species of amphibians captured at each wetland. Data also includes concentrations of metals in bed sediment and larval amphibians collected from 32 and 12 wetlands, respectively in 2015-2016. Abundance of barred tiger salamanders (Ambystoma mavortium), boreal chorus frogs (Pseudacris maculata), northern leopard frogs (Lithobates pipiens) was estimated at 33 wetlands from 2015-2017. Surface water was collected in the summer from each wetland in 2015-2017 at the same time as the amphibian surveys and analyzed for chloride. Wetland area, wetland depth and estimate of the percent shallows was also collected as habitat covariates. Specific conductance data were collected at all wetlands in order to determine the locally derived Contamination Index (chloride concentration/specific conductance). Bed sediment was collected from several locations in 32 wetlands (3 in 2015 and 30 in 2016), homogenized and analyzed for a suite of 28 metals in 2015 and 2016. Larval amphibian tissues from the three species were also analyzed for the same suite of 28 metals in 2015 and 2016. Larval barred tiger salamanders, boreal chorus frogs and northern leopard frogs were collected in 12 wetlands (2 in 2015 and 10 in 2016) and analyzed for a suite of 26 metals. Northern leopard frogs and tiger salamander larvae were analyzed as individuals while boreal chorus frogs were composited due to their small size.
DOI: 10.5281/zenodo.1412792
title: A Systematic Mapping Study on Software Product Line Experiments

description: Available data regarding a A Systematic Mapping Study on Software Product Line Experiments
DOI: 10.5281/zenodo.1412807
title: Genotype data of 10 nuclear microsatellite loci for 30 Quercus acutissima populations in China

description: This dataset includes genotype data of 10 nuclear microsatellite loci for 707 individuals of Quercus acutissima from 30 natural populations in China.
DOI: 10.5281/zenodo.1412808
title: Genotype data of 10 nuclear microsatellite loci for 30 Quercus acutissima populations in China

description: This dataset includes genotype data of 10 nuclear microsatellite loci for 707 individuals of Quercus acutissima from 30 natural populations in China.
DOI: 10.7910/dvn/cqxhth/2inbnx
title: Session 11 Table C-9-11-2016.pdf

description: PDF format discussion transcript of Session 11 Table C
DOI: 10.7910/dvn/cqxhth/7fpsbf
title: Session 6 Table E-14-11-2016.pdf

description: PDF format discussion transcript of Session 6 Table E
DOI: 10.7910/dvn/cqxhth/87hq95
title: Session 11 Table D-9-11-2016.pdf

description: PDF format discussion transcript of Session 11 Table D
DOI: 10.7910/dvn/cqxhth/9evflf
title: Codebook.pdf

description: Codebook that explains all variables included in Dataset (4) and (5).
DOI: 10.7910/dvn/cqxhth/9ioq4z
title: Session 5 Table E-11-11-2016.pdf

description: PDF format discussion transcript of Session 5 Table E
DOI: 10.7910/dvn/cqxhth/afqxoo
title: Session 6 Table D-14-11-2016.pdf

description: PDF format discussion transcript of Session 6 Table D
DOI: 10.7910/dvn/cqxhth/am1tau
title: Readme.txt

description: Readme file
DOI: 10.7910/dvn/cqxhth/b8i2fj
title: ajps_replication_wide.tab

description: Dataset (2): Non-panel format for the analysis of results that concern Tasks 1 and 2; generated using R codes (“AJPS_replication_R_datashaping.R”) from Dataset (1)
DOI: 10.7910/dvn/cqxhth/bjrira
title: Session 5 Table A-11-11-2016.pdf

description: PDF format discussion transcript of Session 5 Table A
DOI: 10.7910/dvn/cqxhth/difumh
title: Session 12 Table A-17-11-2016.pdf

description: PDF format discussion transcript of Session 12 Table A
DOI: 10.7910/dvn/cqxhth/edggp9
title: Session 12 Table D-17-11-2016.pdf

description: PDF format discussion transcript of Session 12 Table D
DOI: 10.7910/dvn/cqxhth/ht1xlj
title: AFINN-111.txt

description: AFINN-111 dictionary for generating sentiment scores
DOI: 10.7910/dvn/cqxhth/htqdmi
title: ajps_lebanon_raw_wide.tab

description: Dataset (1): raw dataset used to generate datasets for STATA analysis
DOI: 10.7910/dvn/cqxhth/jazajk
title: ajps_replication_long.dta

description: Dataset (5): MAIN dataset for STATA analysis using “AJPS replication tables and figures.do”; equivalent to Dataset (3)
DOI: 10.7910/dvn/cqxhth/jubkp0
title: ajps_replication_wide.dta

description: Dataset (4): MAIN dataset for STATA analysis using “AJPS replication tables and figures.do”; equivalent to Dataset (2).
DOI: 10.7910/dvn/cqxhth/kiidil
title: Session 11 Table E-9-11-2016.pdf

description: PDF format discussion transcript of Session 11 Table E
DOI: 10.7910/dvn/cqxhth/leuf7d
title: Session 12 Table B-17-11-2016.pdf

description: PDF format discussion transcript of Session 12 Table B
DOI: 10.7910/dvn/cqxhth/m55a1x
title: Session 12 Table C-17-11-2016.pdf

description: PDF format discussion transcript of Session 12 Table C
DOI: 10.7910/dvn/cqxhth/mbubw4
title: Session 5 Table D-11-11-2016.pdf

description: PDF format discussion transcript of Session 5 Table D
DOI: 10.7910/dvn/cqxhth/oas7yt
title: Session 6 Table C-14-11-2016.pdf

description: PDF format discussion transcript of Session 6 Table C
DOI: 10.7910/dvn/cqxhth/q9fxib
title: Session 6 Table B-14-11-2016.pdf

description: PDF format discussion transcript of Session 6 Table B
DOI: 10.7910/dvn/cqxhth/rbxvfy
title: AJPS replication tables and figures.do

description: STATA Do-file for generating results reported in the main article and the Supporting Information
DOI: 10.7910/dvn/cqxhth/rzoqko
title: Session 11 Table B-9-11-2016.pdf

description: PDF format discussion transcript of Session 11 Table B
DOI: 10.7910/dvn/cqxhth/svp7z5
title: Session 11 Table A-9-11-2016.pdf

description: PDF format discussion transcript of Session 11 Table A
DOI: 10.7910/dvn/cqxhth/tvcw6w
title: Session 12 Table E-17-11-2016.pdf

description: PDF format discussion transcript of Session 12 Table E
DOI: 10.7910/dvn/cqxhth/twm7v2
title: expert_manipulation.tab

description: Dataset (8): secondary dataset for the Appendix C figure in the Supporting Information; generated using R codes (“AJPS_replication_R_datashaping.R”) and Dataset (2).
DOI: 10.7910/dvn/cqxhth/txchlr
title: arab_barometer_w4_lebanon.dta

description: Dataset (7): Lebanese data in the 4th wave of the Afrobarometer survey for the Appendix A figure in the Supporting Information.
DOI: 10.7910/dvn/cqxhth/ugsmip
title: ajps_replication_long.tab

description: Dataset (3): Panel format for the analysis of results that concern Task 3; generated using R codes (“AJPS_replication_R_datashaping.R”) from Dataset (1).
DOI: 10.7910/dvn/cqxhth/vnwxpa
title: AJPS_replication_R_datashaping.R

description: R codes generating Datasets (2), (3), (8), and (9) and figures of Appendices O and P in the Supporting Information
DOI: 10.7910/dvn/cqxhth/wkr8sp
title: election_switching.tab

description: Dataset (9): secondary dataset for the Appendix O figure in the Supporting Information; generated using R codes (“AJPS_replication_R_datashaping.R”) and Dataset (2).
DOI: 10.7910/dvn/cqxhth/yf3ea1
title: arab_barometer_w3_lebanon.dta

description: Dataset (6): Lebanese data in the 3rd wave of the Afrobarometer survey for the Appendix A figure in the Supporting Information.
DOI: 10.18739/a2z892f0p
title: Micropulse lidar (MPL) measurements taken at Summit Station, Greenland, 2018
DOI: 10.7910/dvn/cqxhth/jo09db
title: Session 5 Table B-11-11-2016.pdf

description: PDF format discussion transcript of Session 5 Table B
DOI: 10.7910/dvn/cqxhth/lfucku
title: Session 5 Table C-11-11-2016.pdf

description: PDF format discussion transcript of Session 5 Table C
DOI: 10.5063/f1cj8bph
title: Languages used in Alaskan households, 1990-2015

description: These data show languages spoken in the household for people over the age of 5 in Alaska, in addition to the total population, by community. These data come from census surveys, both from the American Community Survey and the decennial census Population and language use data were originally extracted from IPUMS National Historic Geographic Information Systems website: https://data2.nhgis.org/main (Citation: Steven Manson, Jonathan Schroeder, David Van Riper, and Steven Ruggles. IPUMS National Historical Geographic Information System: Version 12.0 [Database]. Minneapolis: University of Minnesota. 2017. http://doi.org/10.18128/D050.V12.0). The file "household_language.csv" is a consolidation of a number of tables downloaded from this system (see methods for more information). The "language.Rmd" file is a script which combines the files by year into a single file. It also cleans up place names (including typographical errors) and uses the USGS place names dataset and the SASAP regions dataset to assign latitude and longitude values and region values to each place in the dataset. Additionally, the "language_vis.Rmd" file is a script that uses this data to visualize Native language use by community, displayed in the "language_vis.html" file.
DOI: 10.18739/a2k06x097
title: Ceilometer Cloud Base Height Measurements at Summit Station, Greenland, 2018
DOI: 10.21223/p3/3azyqo
title: Replication data for: A novel sweet potato potyvirus open reading frame (ORF) is expressed via polymerase slippage and suppresses RNA silencing

description: The accumulation of GFP mRNA and GFP mRNA-derived siRNA was evaluated by northern blot analysis in leaf tissues agroinfiltrated for coexpression of GFP and P1, P1N-PISPO, SPFMV HCpro, SPLV P1, PVA HCpro or GUS. Total RNA was extracted with TRIzol LS Reagent (Invitrogen) according to the manufacturer’s recommendations alow-molecular-weight (LMW) and high-molecular-weight (HMW) RNA fractions were separated as described in Cuellar et al. (2009). LMW RNA (15 lg/lane) and HMW RNA (10 lg/lane) were separated by electrophoresis in a denaturing 15% polyacrylamide gel and 1.2% (w/v) agarose gel, respectively, both containing formaldehyde. The two gels were transferred to a nylon membrane (GE Healthcare) and crosslinked chemically with 1-ethyl-3-(3-dimethylaminopropyl)carbodi-imide (Pall and Hamilton, 2008) or by UV light (Sambrook and Russell, 2001), respectively. A GFP mRNA-specific radioactive RNA probe was synthesized, fractionated with carbonate hydrolysis and used to probe the membranes for GFP mRNA and GFP mRNA-derived siRNA, as described previously (Cuellar et al., 2009). Signals were detected by autoradiography on an X-ray film (Kodak)
DOI: 10.21223/p3/681tf7
title: Replication data for: Multilevel Agrobiodiversity and Conservation of Andean Potatoes in Central Peru

description: A population consisting of 989 samples belonging to 8 farmer households (ISC-01 to ISC-08) was characterized using 18 polymorphic single sequence repeat (SSR; microsatellite) markers covering the whole genome (Ghislain et al 2004). Standard procedures, including DNA extraction with DNeasy 96 plant kits, high-throughput genotyping with a LI-COR 4300 DNA Analysis System,and SSR allele scoring with SAGA Generation 2 software (LI-COR), were applied. Standardized dissimilarity analysis for ISC-01 to ISC-08 and the regional population were conducted using the Jaccard coefficient and UPGMA clustering method with NTSYS-pc 2.1 software. Dissimilarity trees (dendrograms) were built with the same data using an unweighted neighbor joining clustering method for a dissimilarity matrix calculated with the Jaccard coefficient using DARwin 4.0 and NTSYS-pc 2.1 software.
DOI: 10.21223/p3/h05a0f
title: Replication data for: Complete genome sequence of a potyvirus infecting yam beans (Pachyrhizus spp.) in Peru

description: Towards the end of 2010, viral disease symptoms (mosaic with or without leaf deformation) were observed in a yam bean field trial at the CIP research station in San Ramon, Junin, Peru (wet tropics, 800 masl). The disease could be graft transmitted, and based on symptoms, an infection by the potyvirus bean common mosaic virus (BCMV) was suspected. Plants were tested by NCM-ELISA using potyvirus-specific antibodies (Agdia CAB 27200), to which all symptomatic plants reacted positively, whereas symptomless greenhouse-grown plants did not react. Small interfering RNA (siRNA) sequencing (Provider: Fasteris Life Sciences SA, Plan-les-Ouates, Switzerland) and assembly were performed on a sample (P. tuberosus accession CIP209014) showing severe mosaic and leaf deformation as described by Kreuze et al., except that the reads were assembled using Velvet’s Assembly Assembler (v1.1)
DOI: 10.5281/zenodo.1413665
title: Data and analysis pipelines used in Increasing workflow development speed and reproducibility with Vectools

description: The methods, pipelines, and data used for the examples shown in the Vectools manuscript.
DOI: 10.5281/zenodo.1413666
title: Data and analysis pipelines used in Increasing workflow development speed and reproducibility with Vectools

description: The methods, pipelines, and data used for the examples shown in the Vectools manuscript.
DOI: 10.18739/a2fb4wk7x
title: Data from Cruise Healy 1302 along the Beaufort Margin
DOI: 10.25625/fonobm/dqhb4l
title: tei_color.rng

description: :unav
DOI: 10.5066/f7h70f02
title: Observations of bullseye snakehead (Channa marulius) in Florida

description: This dataset contains information on the Bullseye Snakehead fish found only in southeastern Florida. It is a subset of a larger database, the Nonindigenous Aquatic Species Database (NAS). This information resource is an established central repository for spatially referenced biogeographic accounts of introduced aquatic species. The NAS website provides scientific reports, online/real-time queries, spatial data sets, distribution maps, fact sheets, and general information.