cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9vc8c6
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sisymbriopsis pamirica (Y.C.Lan & C.H.An) Al-Shehbaz, C.H.An & G.Yang"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0110242-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9c9s73
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sisymbriopsis schugnana Botsch. & Tzvelev"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0110243-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffvfte
title: Occurrence Download

description: A dataset containing 1024 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Scutellaria baicalensis Georgi"
 ]
}

 The dataset includes 1024 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0110244-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mcyc5e
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sisymbrium afghanicum Gilli"
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0110245-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hq9ty8
title: Occurrence Download

description: A dataset containing 8454901 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8454901 records from 2747 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0110240-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.23557984.v1
title: Additional file 4 of BCAT1 controls embryonic neural stem cells proliferation and differentiation in the upper layer neurons

description: Additional file 4. Table S3. Each cell corresponds to the State ID in Figure 2.
DOI: 10.6084/m9.figshare.7305248
title: Additional file 5: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

description: Table S5. List of SSR primer pairs derived from two species and 129 selected SSR primers. (XLSX 1354 kb)
DOI: 10.6084/m9.figshare.7305266
title: Additional file 7: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

description: Table S7. The statistical parameters of 13 validated primer pairs using 96 individuals. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.12023697
title: Additional file 7 of Genome‑wide integrated analysis demonstrates widespread functions of lncRNAs in mammary gland development and lactation in dairy goats

description: Additional file 7: Table S6. GO annotation of related genes of lncRNAs.
DOI: 10.6084/m9.figshare.12023706
title: Additional file 9 of Genome‑wide integrated analysis demonstrates widespread functions of lncRNAs in mammary gland development and lactation in dairy goats

description: Additional file 9: Table S8. Regulatory relationship between lncRNAs, miRNAs and mRNAs.
DOI: 10.6084/m9.figshare.12023664.v1
title: Additional file 2 of Genome‑wide integrated analysis demonstrates widespread functions of lncRNAs in mammary gland development and lactation in dairy goats

description: Additional file 2: Table S1. Family classification of lncRNAs in the Rfam database.
DOI: 10.6084/m9.figshare.12023670.v1
title: Additional file 3 of Genome‑wide integrated analysis demonstrates widespread functions of lncRNAs in mammary gland development and lactation in dairy goats

description: Additional file 3: Table S2. Differentially expressed lncRNAs between different lactation periods.
DOI: 10.6084/m9.figshare.12023682
title: Additional file 5 of Genome‑wide integrated analysis demonstrates widespread functions of lncRNAs in mammary gland development and lactation in dairy goats

description: Additional file 5: Table S4. Differentially expressed mRNAs between different lactation periods.
DOI: 10.6084/m9.figshare.12023697.v1
title: Additional file 7 of Genome‑wide integrated analysis demonstrates widespread functions of lncRNAs in mammary gland development and lactation in dairy goats

description: Additional file 7: Table S6. GO annotation of related genes of lncRNAs.
DOI: 10.6084/m9.figshare.12023676
title: Additional file 4 of Genome‑wide integrated analysis demonstrates widespread functions of lncRNAs in mammary gland development and lactation in dairy goats

description: Additional file 4: Table S3. Differentially expressed transcripts between different lactation periods.
DOI: 10.6084/m9.figshare.12023664
title: Additional file 2 of Genome‑wide integrated analysis demonstrates widespread functions of lncRNAs in mammary gland development and lactation in dairy goats

description: Additional file 2: Table S1. Family classification of lncRNAs in the Rfam database.
DOI: 10.6084/m9.figshare.12023676.v1
title: Additional file 4 of Genome‑wide integrated analysis demonstrates widespread functions of lncRNAs in mammary gland development and lactation in dairy goats

description: Additional file 4: Table S3. Differentially expressed transcripts between different lactation periods.
DOI: 10.6084/m9.figshare.12023706.v1
title: Additional file 9 of Genome‑wide integrated analysis demonstrates widespread functions of lncRNAs in mammary gland development and lactation in dairy goats

description: Additional file 9: Table S8. Regulatory relationship between lncRNAs, miRNAs and mRNAs.
DOI: 10.6084/m9.figshare.12023703.v1
title: Additional file 8 of Genome‑wide integrated analysis demonstrates widespread functions of lncRNAs in mammary gland development and lactation in dairy goats

description: Additional file 8: Table S7. KEGG pathways of related genes of lncRNAs.
DOI: 10.6084/m9.figshare.12023688.v1
title: Additional file 6 of Genome‑wide integrated analysis demonstrates widespread functions of lncRNAs in mammary gland development and lactation in dairy goats

description: Additional file 6: Table S5. Predicted apcGenes of lncRNAs.
DOI: 10.6084/m9.figshare.12023688
title: Additional file 6 of Genome‑wide integrated analysis demonstrates widespread functions of lncRNAs in mammary gland development and lactation in dairy goats

description: Additional file 6: Table S5. Predicted apcGenes of lncRNAs.
DOI: 10.6084/m9.figshare.7305272
title: Additional file 1: of Genome-wide identification and analysis of WD40 proteins in wheat (Triticum aestivum L.)

description: Table S1. Characteristic features of 743 TaWD40s. Table S2. KaKs ratios of tandemly duplicated TaWD40s. Table S3. KaKs ratios of segmentally duplicated TaWD40s. Table S4. Syntenic relationships of WD40s between wheat and rice. Table S5. Homologous WD40s among wheat, rice, and Arabidopsis. Table S6. The expression levels of TaWD40s for spatial and temporal expression profiles analysis. Table S7. Significantly and differentially expressed TaWD40s under biotic and abiotic stresses. Table S8. Primers used for qRT-PCR. Table S9. Amino acid sequences of 743 TaWD40s. Table S10. Coding sequences of 743 TaWD40s. Table S11. Corresponding table for homologous TaWD40s located on 21 wheat chromosomes. Table S12. Functional annotation of TaWD40s from IWGSC RefSeqv1.0. (ZIP 1478Â kb)
DOI: 10.6084/m9.figshare.7305185.v1
title: Additional file 4: of An improved suppression subtractive hybridization technique to develop species-specific repetitive sequences from Erianthus arundinaceus (Saccharum complex)

description: Table S1. Nucleotide sequences used in this study. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7305185
title: Additional file 4: of An improved suppression subtractive hybridization technique to develop species-specific repetitive sequences from Erianthus arundinaceus (Saccharum complex)

description: Table S1. Nucleotide sequences used in this study. (XLSX 9 kb)
DOI: 10.48597/sp4w-rnpk
title: Fluoranthene at Borovoe

description: Measurement of Fluoranthene at Borovoe
DOI: 10.6084/m9.figshare.12023703
title: Additional file 8 of Genome‑wide integrated analysis demonstrates widespread functions of lncRNAs in mammary gland development and lactation in dairy goats

description: Additional file 8: Table S7. KEGG pathways of related genes of lncRNAs.
DOI: 10.48597/tksc-y3rw
title: PM mass at Harwell

description: Measurement of PM mass at Harwell
DOI: 10.48597/u2ps-gzkm
title: Aerosol_absorption_coefficient at Trinidad Head

description: Measurement of Aerosol_absorption_coefficient at Trinidad Head
DOI: 10.48597/u44d-y5my
title: Particle_number_concentration at Barrow

description: Measurement of Particle_number_concentration at Barrow
DOI: 10.48597/u73a-ja9n
title: Aerosol_absorption_coefficient at Trinidad Head

description: Measurement of Aerosol_absorption_coefficient at Trinidad Head
DOI: 10.48597/ufjg-uqg9
title: Nitrogen oxides at Poiana Stampei

description: Measurement of Nitrogen oxides at Poiana Stampei
DOI: 10.48597/v9zm-kpka
title: 1-methylnaphthalene at Borovoe

description: Measurement of 1-methylnaphthalene at Borovoe
DOI: 10.48597/vb4b-xncr
title: 2-methylanthracene at Borovoe

description: Measurement of 2-methylanthracene at Borovoe
DOI: 10.48597/w7bx-sanh
title: Aerosol_absorption_coefficient at Trinidad Head

description: Measurement of Aerosol_absorption_coefficient at Trinidad Head
DOI: 10.48597/xdnk-6s6r
title: Acenaphthylene at Borovoe

description: Measurement of Acenaphthylene at Borovoe
DOI: 10.48597/xk9u-nxxf
title: 1-methylphenanthrene at Borovoe

description: Measurement of 1-methylphenanthrene at Borovoe
DOI: 10.48597/xn39-adjb
title: Attenuation_coefficient, bypass_fraction, equivalent_black_carbon, flow_rate, reference_beam_signal, reference_zero_signal, sensing_beam_signal and sensing_zero_signal at Finokalia

description: Measurement of Attenuation_coefficient, bypass_fraction, equivalent_black_carbon, flow_rate, reference_beam_signal, reference_zero_signal, sensing_beam_signal and sensing_zero_signal at Finokalia
DOI: 10.48597/y5u5-8a9j
title: Attenuation_coefficient, bypass_fraction, equivalent_black_carbon, flow_rate, reference_beam_signal, reference_zero_signal, sensing_beam_signal and sensing_zero_signal at Finokalia

description: Measurement of Attenuation_coefficient, bypass_fraction, equivalent_black_carbon, flow_rate, reference_beam_signal, reference_zero_signal, sensing_beam_signal and sensing_zero_signal at Finokalia
DOI: 10.48597/yjkj-ff8g
title: Attenuation_coefficient, bypass_fraction, equivalent_black_carbon, flow_rate, reference_beam_signal, reference_zero_signal, sensing_beam_signal and sensing_zero_signal at Finokalia

description: Measurement of Attenuation_coefficient, bypass_fraction, equivalent_black_carbon, flow_rate, reference_beam_signal, reference_zero_signal, sensing_beam_signal and sensing_zero_signal at Finokalia
DOI: 10.48597/ywcz-psxk
title: Particle_number_concentration at Appalachian State University, Boone (NC)

description: Measurement of Particle_number_concentration at Appalachian State University, Boone (NC)
DOI: 10.48597/yyb5-nfbh
title: Heavy metals at Nordmoen

description: Measurement of Heavy metals at Nordmoen
DOI: 10.48597/z35y-xnmb
title: Conductivity at Ny-Ålesund

description: Measurement of Conductivity at Ny-Ålesund
DOI: 10.48597/z5y3-6ebw
title: Particle_number_concentration at Izana

description: Measurement of Particle_number_concentration at Izana
DOI: 10.48597/z6vx-8zhh
title: Aerosol_absorption_coefficient at Trinidad Head

description: Measurement of Aerosol_absorption_coefficient at Trinidad Head
DOI: 10.48597/zbyp-gz57
title: Magnesium at Zoseni

description: Measurement of Magnesium at Zoseni
DOI: 10.48597/zdpr-d79w
title: Particle_number_concentration at Barrow

description: Measurement of Particle_number_concentration at Barrow
DOI: 10.48597/znfw-ddx7
title: Ammonium at Svratouch

description: Measurement of Ammonium at Svratouch
DOI: 10.48597/zqew-m9ep
title: Aerosol_absorption_coefficient at Trinidad Head

description: Measurement of Aerosol_absorption_coefficient at Trinidad Head
DOI: 10.48597/zyvf-t8en
title: Inorganics in air and particle phase at Bilthoven

description: Measurement of Inorganics in air and particle phase at Bilthoven
DOI: 10.6084/m9.figshare.7305242
title: Additional file 4: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

description: Table S4. GO annotations of unigenes with Ka/Ks and the results of following enrichment analysis. (XLSX 100 kb)
DOI: 10.6084/m9.figshare.7305266.v1
title: Additional file 7: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

description: Table S7. The statistical parameters of 13 validated primer pairs using 96 individuals. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7305206
title: Additional file 2: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

description: Table S2. List of Reciprocal Best Hits of C. masuca and C. sinica. (XLSX 741 kb)
DOI: 10.6084/m9.figshare.23558041.v1
title: Additional file 6 of Integrative multi-omics analysis reveals novel idiopathic pulmonary fibrosis endotypes associated with disease progression

description: Additional file 6: Table S8. Canonical pathways that were significantly enriched (FDR p-value &lt; 0.05) for genes associated with down-regulated proteins.
DOI: 10.6084/m9.figshare.23558044
title: Additional file 7 of Integrative multi-omics analysis reveals novel idiopathic pulmonary fibrosis endotypes associated with disease progression

description: Additional file 7: Table S9. Canonical pathways that were significantly enriched (FDR p-value &lt; 0.05) for the experimentally-validated target genes of the 591 up-regulated and 1313 down-regulated miRNAs.
DOI: 10.6084/m9.figshare.7305206.v1
title: Additional file 2: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

description: Table S2. List of Reciprocal Best Hits of C. masuca and C. sinica. (XLSX 741 kb)
DOI: 10.6084/m9.figshare.7305248.v1
title: Additional file 5: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

description: Table S5. List of SSR primer pairs derived from two species and 129 selected SSR primers. (XLSX 1354 kb)
DOI: 10.6084/m9.figshare.7305254.v1
title: Additional file 6: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

description: Table S6. The statistical parameters of 75 validated primer pairs using eight individuals of each species. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.7305260.v1
title: Additional file 2: of Trio-R: a script for assessing maternity and paternity in trio studies performed on Agilent chromosomal microarrays

description: Clinical version of the R-script. (R 7 kb)
DOI: 10.6084/m9.figshare.7305278
title: Additional file 8: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

description: Table S8. In silico PCR analysis. Using the primers of C. masuca and C. sinica against the unigene of each other and against Phalaenopsis equestris and Dendrobium catenatum. (XLSX 114 kb)
DOI: 10.6084/m9.figshare.7305254
title: Additional file 6: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

description: Table S6. The statistical parameters of 75 validated primer pairs using eight individuals of each species. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.7305242.v1
title: Additional file 4: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

description: Table S4. GO annotations of unigenes with Ka/Ks and the results of following enrichment analysis. (XLSX 100 kb)
DOI: 10.6084/m9.figshare.7305278.v1
title: Additional file 8: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

description: Table S8. In silico PCR analysis. Using the primers of C. masuca and C. sinica against the unigene of each other and against Phalaenopsis equestris and Dendrobium catenatum. (XLSX 114 kb)
DOI: 10.6084/m9.figshare.23558044.v1
title: Additional file 7 of Integrative multi-omics analysis reveals novel idiopathic pulmonary fibrosis endotypes associated with disease progression

description: Additional file 7: Table S9. Canonical pathways that were significantly enriched (FDR p-value &lt; 0.05) for the experimentally-validated target genes of the 591 up-regulated and 1313 down-regulated miRNAs.
DOI: 10.6084/m9.figshare.7305260
title: Additional file 2: of Trio-R: a script for assessing maternity and paternity in trio studies performed on Agilent chromosomal microarrays

description: Clinical version of the R-script. (R 7 kb)
DOI: 10.6084/m9.figshare.12023682.v1
title: Additional file 5 of Genome‑wide integrated analysis demonstrates widespread functions of lncRNAs in mammary gland development and lactation in dairy goats

description: Additional file 5: Table S4. Differentially expressed mRNAs between different lactation periods.
DOI: 10.6084/m9.figshare.7305290.v1
title: Additional file 2: of Genome-wide identification and analysis of WD40 proteins in wheat (Triticum aestivum L.)

description: Figure S1. Exon/intron organizations of 743 TaWD40s. Solid yellow boxes and black lines indicate exons and introns, respectively. The scale is shown at the bottom of the figure. Figure S2. MA plots of differentially expressed TaWD40s under biotic and abiotic stresses. MA plots were generated with DESeq2 version 1.20.0. Points are highlighted in red when padj is less than 0.05, representing significantly and differentially expressed TaWD40s. Points falling outside of 2 to − 2 log fold are plotted as open triangles pointing either up or down. (a) Cold stress for 2 weeks, (b) Heat stress for 1 h, (c) Heat stress for 6 h, (d) Drought stress for 1 h, (e) Drought stress for 6 h, (f) Drought and heat stresses for 1 h, (g) Drought and heat stresses for 6 h, (h) Infection of powdery mildew pathogen (E09) for 24 h, (i) Infection of powdery mildew pathogen (E09) for 48 h, (j) Infection of powdery E09 for 72 h, (k) Infection of stripe rust pathogen (CYR31) for 24 h, (l) Infection of CYR31 for 48 h, and (m) Infection of CYR31 for 72 h. Figure S3. Standard and dissociation curves of qRT-PCR. (ZIP 9762 kb)
DOI: 10.6084/m9.figshare.12023670
title: Additional file 3 of Genome‑wide integrated analysis demonstrates widespread functions of lncRNAs in mammary gland development and lactation in dairy goats

description: Additional file 3: Table S2. Differentially expressed lncRNAs between different lactation periods.
DOI: 10.6084/m9.figshare.23558041
title: Additional file 6 of Integrative multi-omics analysis reveals novel idiopathic pulmonary fibrosis endotypes associated with disease progression

description: Additional file 6: Table S8. Canonical pathways that were significantly enriched (FDR p-value &lt; 0.05) for genes associated with down-regulated proteins.
DOI: 10.6084/m9.figshare.5732496.v2
title: The autophagy-inducing kinases, ULK1 and ULK2, regulate axon guidance in the developing mouse forebrain via a noncanonical pathway

description: Mammalian ULK1 (unc-51 like kinase 1) and ULK2, <i>Caenorhabditis elegans</i> UNC-51, and <i>Drosophila melanogaster</i> Atg1 are serine/threonine kinases that regulate flux through the autophagy pathway in response to various types of cellular stress. <i>C. elegans</i> UNC-51 and <i>D. melanogaster</i> Atg1 also promote axonal growth and defasciculation; disruption of these genes results in defective axon guidance in invertebrates. Although disrupting ULK1/2 function impairs normal neurite outgrowth in vitro, the role of ULK1 and ULK2 in the developing brain remains poorly characterized. Here, we show that ULK1 and ULK2 are required for proper projection of axons in the forebrain. Mice lacking <i>Ulk1</i> and <i>Ulk2</i> in their central nervous systems showed defects in axonal pathfinding and defasciculation affecting the corpus callosum, anterior commissure, corticothalamic axons and thalamocortical axons. These defects impaired the midline crossing of callosal axons and caused hypoplasia of the anterior commissure and disorganization of the somatosensory cortex. The axon guidance defects observed in <i>ulk1/2</i> double-knockout mice and central nervous system-specific (<i>Nes-Cre</i>) <i>Ulk1/2</i>-conditional double-knockout mice were not recapitulated in mice lacking other autophagy genes (i.e., <i>Atg7</i> or <i>Rb1cc1</i> [RB1-inducible coiled-coil 1]). The brains of <i>Ulk1/2</i>-deficient mice did not show stem cell defects previously attributed to defective autophagy in <i>ambra1</i> (autophagy/Beclin 1 regulator 1)- and <i>Rb1cc1</i>-deficient mice or accumulation of SQSTM1 (sequestosome 1)<sup>+</sup> or ubiquitin<sup>+</sup> deposits. Together, these data demonstrate that ULK1 and ULK2 regulate axon guidance during mammalian brain development via a noncanonical (i.e., autophagy-independent) pathway.
DOI: 10.6084/m9.figshare.7305272.v1
title: Additional file 1: of Genome-wide identification and analysis of WD40 proteins in wheat (Triticum aestivum L.)

description: Table S1. Characteristic features of 743 TaWD40s. Table S2. KaKs ratios of tandemly duplicated TaWD40s. Table S3. KaKs ratios of segmentally duplicated TaWD40s. Table S4. Syntenic relationships of WD40s between wheat and rice. Table S5. Homologous WD40s among wheat, rice, and Arabidopsis. Table S6. The expression levels of TaWD40s for spatial and temporal expression profiles analysis. Table S7. Significantly and differentially expressed TaWD40s under biotic and abiotic stresses. Table S8. Primers used for qRT-PCR. Table S9. Amino acid sequences of 743 TaWD40s. Table S10. Coding sequences of 743 TaWD40s. Table S11. Corresponding table for homologous TaWD40s located on 21 wheat chromosomes. Table S12. Functional annotation of TaWD40s from IWGSC RefSeqv1.0. (ZIP 1478Â kb)