cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1018699.v1
title: New <i>Australonura</i> Cassagnau 1980 (Neanuridae: Neanurinae) from Brazil

description: Two new species of <i>Australonura</i> Cassagnau 1980 from Brazil, <i>Australonura neotropica</i> sp. nov. and <i>Australonura gili</i> sp. nov., are described and illustrated. The species occur in sympatry at a high altitude plateau of the ‘Serra de Itatiaia’, a mountainous range in the southeast region of the country. These two species are the first record of <i>Australonura</i> for Brazil. A modified diagnosis of the genus is provided.http://zoobank.org/urn:lsid:zoobank.org:pub:8B898086-A0D4-4219-B5F4-EEA5D912F097
DOI: 10.6084/m9.figshare.1018565
title: Bonding in benzodicyclobutadiene isomers: insights from modern valence bond theory

description: Spin-coupled (SC) theory, which uses a compact and easy-to-interpret wavefunction that is comparable in quality to a complete active space self-consistent field construction, is used to obtain modern <i>ab initio</i> valence bond descriptions of the π‑electron systems of three benzodicyclobutadiene isomers. The geometries at the two energy minima for benzo[1,2:4,5]dicyclobutadiene (<b>I</b> and <b>II</b>) differ mostly in the lengths of the annulated CC bonds (<i>ca</i>. 1.41 and 1.55 Å, respectively). Analysis of the π-space SC wavefunctions indicate that the electronic structure of isomer <b>I</b> resembles a fairly standard benzene ring augmented with two exocyclic double bonds; its resonance pattern is dominated by two Kekulé-like and three less-important Dewar-like structures. Contrary to assumptions made in previous work, the resonance pattern for isomer <b>II</b> features two para-bonded structures which are at least as important as any of the Kekulé-like structures. In the case of benzo[1,2:3,4]dicyclobutadiene, analysis of the π-space SC wavefunction shows that the expected Kekulé-like structure is indeed the most important, but this system provides further evidence that reliance on chemical intuition can sometimes lead to erroneous predictions about the relative importance of resonance structures; certain para-bonded structures turn out to be more important than any of the other four Kekulé-like structures. The SC calculations suggest that benzo[1,2:4,5]dicyclobutadiene isomer <b>I</b> is the most aromatic, followed by benzo[1,2:4,5]dicyclobutadiene isomer <b>II</b>, whereas benzo[1,2:3,4]dicyclobutadiene is close to being a non-aromatic conjugated system.
DOI: 10.6084/m9.figshare.1018552
title: Gaussian Job Archive for C56H89BrN2Si3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1018552.v1
title: Gaussian Job Archive for C56H89BrN2Si3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1018553
title: Gaussian Job Archive for C59H93ClGeN4Si2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1018553.v1
title: Gaussian Job Archive for C59H93ClGeN4Si2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1018565.v1
title: Bonding in benzodicyclobutadiene isomers: insights from modern valence bond theory

description: Spin-coupled (SC) theory, which uses a compact and easy-to-interpret wavefunction that is comparable in quality to a complete active space self-consistent field construction, is used to obtain modern <i>ab initio</i> valence bond descriptions of the π‑electron systems of three benzodicyclobutadiene isomers. The geometries at the two energy minima for benzo[1,2:4,5]dicyclobutadiene (<b>I</b> and <b>II</b>) differ mostly in the lengths of the annulated CC bonds (<i>ca</i>. 1.41 and 1.55 Å, respectively). Analysis of the π-space SC wavefunctions indicate that the electronic structure of isomer <b>I</b> resembles a fairly standard benzene ring augmented with two exocyclic double bonds; its resonance pattern is dominated by two Kekulé-like and three less-important Dewar-like structures. Contrary to assumptions made in previous work, the resonance pattern for isomer <b>II</b> features two para-bonded structures which are at least as important as any of the Kekulé-like structures. In the case of benzo[1,2:3,4]dicyclobutadiene, analysis of the π-space SC wavefunction shows that the expected Kekulé-like structure is indeed the most important, but this system provides further evidence that reliance on chemical intuition can sometimes lead to erroneous predictions about the relative importance of resonance structures; certain para-bonded structures turn out to be more important than any of the other four Kekulé-like structures. The SC calculations suggest that benzo[1,2:4,5]dicyclobutadiene isomer <b>I</b> is the most aromatic, followed by benzo[1,2:4,5]dicyclobutadiene isomer <b>II</b>, whereas benzo[1,2:3,4]dicyclobutadiene is close to being a non-aromatic conjugated system.
DOI: 10.6084/m9.figshare.1018489
title: Data of pyrophosphate release, ATP-induced fluorescence and thiol depletion for DltA in Bacillus cereus

description: Data file 1<br>A phosphate accumulation assay is shown: rate dependence on ATP concentration (repeats both with 5 mM CoA and mM D-Ala).<br>Data file 2<br>A phosphate accumulation assay is shown: rate dependence on ATP concentration (repeats both without CoA but with 5 mM D-Ala).<br>Data file 3<br>Data of fluorescence gain versus ATP concentration are shown (relative fluorescence gain for 4 repeats). The excitation wavelength was 305 nm. The emission wavelength was 345 nm.<br>Data file 4<br>A phosphate accumulation assay is shown for the wild type BcDltA: rate versus [Alanine] in the absence of CoA, + 5 mM ATP.<br>Data file 5<br>A phosphate accumulation assay is shown for the mutant C269ABcDltA: rate versus [Alanine] in the absence of CoA, + 5 mM ATP.<br>Data file 6<br>A phosphate accumulation assay is shown for the wild type BcDltA: rate [Alanine] in the presence of 5 mM CoA, + 5 mM ATP. These data were generated with a different batch of protein at a very high L-Ala concentration.<br>Data file 7<br>A thiol depletion assay is shown for the wild type BcDltA: rate versus [Alanine] in the presence of 5 mM CoA, + 5 mM ATP.<br>Data file 8<br>A thiol depletion assay is shown the mutant C269ABcDltA: rate versus [Alanine] in the presence of 5 mM CoA, + 5 mM ATP
DOI: 10.6084/m9.figshare.1018565.v3
title: Bonding in benzodicyclobutadiene isomers: insights from modern valence bond theory

description: Spin-coupled (SC) theory, which uses a compact and easy-to-interpret wavefunction that is comparable in quality to a complete active space self-consistent field construction, is used to obtain modern <i>ab initio</i> valence bond descriptions of the π‑electron systems of three benzodicyclobutadiene isomers. The geometries at the two energy minima for benzo[1,2:4,5]dicyclobutadiene (<b>I</b> and <b>II</b>) differ mostly in the lengths of the annulated CC bonds (<i>ca</i>. 1.41 and 1.55 Å, respectively). Analysis of the π-space SC wavefunctions indicate that the electronic structure of isomer <b>I</b> resembles a fairly standard benzene ring augmented with two exocyclic double bonds; its resonance pattern is dominated by two Kekulé-like and three less-important Dewar-like structures. Contrary to assumptions made in previous work, the resonance pattern for isomer <b>II</b> features two para-bonded structures which are at least as important as any of the Kekulé-like structures. In the case of benzo[1,2:3,4]dicyclobutadiene, analysis of the π-space SC wavefunction shows that the expected Kekulé-like structure is indeed the most important, but this system provides further evidence that reliance on chemical intuition can sometimes lead to erroneous predictions about the relative importance of resonance structures; certain para-bonded structures turn out to be more important than any of the other four Kekulé-like structures. The SC calculations suggest that benzo[1,2:4,5]dicyclobutadiene isomer <b>I</b> is the most aromatic, followed by benzo[1,2:4,5]dicyclobutadiene isomer <b>II</b>, whereas benzo[1,2:3,4]dicyclobutadiene is close to being a non-aromatic conjugated system.
DOI: 10.6084/m9.figshare.1018565.v2
title: Bonding in benzodicyclobutadiene isomers: insights from modern valence bond theory

description: Spin-coupled (SC) theory, which uses a compact and easy-to-interpret wavefunction that is comparable in quality to a complete active space self-consistent field construction, is used to obtain modern <i>ab initio</i> valence bond descriptions of the π‑electron systems of three benzodicyclobutadiene isomers. The geometries at the two energy minima for benzo[1,2:4,5]dicyclobutadiene (<b>I</b> and <b>II</b>) differ mostly in the lengths of the annulated CC bonds (<i>ca</i>. 1.41 and 1.55 Å, respectively). Analysis of the π-space SC wavefunctions indicate that the electronic structure of isomer <b>I</b> resembles a fairly standard benzene ring augmented with two exocyclic double bonds; its resonance pattern is dominated by two Kekulé-like and three less-important Dewar-like structures. Contrary to assumptions made in previous work, the resonance pattern for isomer <b>II</b> features two para-bonded structures which are at least as important as any of the Kekulé-like structures. In the case of benzo[1,2:3,4]dicyclobutadiene, analysis of the π-space SC wavefunction shows that the expected Kekulé-like structure is indeed the most important, but this system provides further evidence that reliance on chemical intuition can sometimes lead to erroneous predictions about the relative importance of resonance structures; certain para-bonded structures turn out to be more important than any of the other four Kekulé-like structures. The SC calculations suggest that benzo[1,2:4,5]dicyclobutadiene isomer <b>I</b> is the most aromatic, followed by benzo[1,2:4,5]dicyclobutadiene isomer <b>II</b>, whereas benzo[1,2:3,4]dicyclobutadiene is close to being a non-aromatic conjugated system.
DOI: 10.6084/m9.figshare.1017369
title: <i>Marphysa cinari</i>, a new species of Eunicidae (Polychaeta) from the coasts of Turkey (eastern Mediterranean) and re-descriptions of <i>Marphysa kinbergi</i> McIntosh, 1910 and <i>Marphysa disjuncta</i> Hartman, 1961

description: The present study describes a new polychaete species belonging to the family Eunicidae, <i>Marphysa cinari</i> sp. nov., collected from the Sea of Marmara and the Aegean Sea (eastern Mediterranean), and re-describes <i>M</i><i>arphysa</i><i>disjuncta</i> Hartman, 1961 and <i>M</i><i>arphysa</i><i>kinbergi</i> McIntosh, 1910. The new species is mainly characterized by having unidentate subacicular hooks with a terminal hood and compound falciger chaetae on posterior parapodia. The shape of unidentate hooks of <i>M.</i><i>cinari</i> is a very important character for distinguishing this species from other species. Atlantic species <i>M.</i><i>kinbergi</i> and Pacific species <i>M.</i><i>disjuncta</i> are very close species and the present paper deals with the differences and similarities between them and the new taxon.http://zoobank.org/urn:lsid:zoobank.org:pub:E8503032-81D3-4B4D-AAA0-9164E05E613F
DOI: 10.6084/m9.figshare.1017338
title: Reynolds Creek LiDAR Data 2009

description: LiDAR data for Reynolds Creek was acquired by Watershed Sciences, Inc. on March 19th 2009. The total area was 18,532 acres.
DOI: 10.6084/m9.figshare.1017338.v1
title: Reynolds Creek LiDAR Data 2009

description: LiDAR data for Reynolds Creek was acquired by Watershed Sciences, Inc. on March 19th 2009. The total area was 18,532 acres.
DOI: 10.6084/m9.figshare.1017335
title: A confuciusornithiform (Aves, Pygostylia)-like tarsometatarsus from the Early Cretaceous of Siberia and a discussion of the evolution of avian hind limb musculature

description: ABSTRACTWe describe a new isolated tarsometatarsus from the Early Cretaceous (Barremian-Aptian) Ilek Formation Shestakovo-3 locality in western Siberia. The new specimen represents a new taxon, <i>Evgenavis nobilis</i>, gen. et sp. nov., significantly increasing the Mesozoic avifauna from Russia. The specimen shares morphologies with a number of basal ornithothoracine taxa, but shows most similarity to the basal pygostylian <i>Confuciusornis sanctus</i>, the oldest known beaked bird and most common taxon from the Yixian Formation. <i>Evgenavis</i> may represent the first record of Confuciusornithiformes outside of the Jehol Group and its equivalent deposits. However, this is not supported by cladistic analysis, which weakly resolves the new species and <i>Mystiornis</i> both within the diverse Enantiornithes, indicating that additional material is required to assess the systematic position of <i>Evgenavis nobilis</i> (Aves incertae sedis). The three-dimensional preservation of the specimen allows for a partial reconstruction of the pedal musculature, revealing a primitive stage in the evolution of the neornithine condition.SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at http://www.tandfonline.com/UJVP.
DOI: 10.6084/m9.figshare.1017336
title: A new acaremyid rodent (Caviomorpha, Octodontoidea) from Scarritt Pocket, Deseadan (late Oligocene) of Patagonia (Argentina)

description: ABSTRACTOctodontoidea is the most diverse caviomorph clade presently represented in South America by Octodontidae, Echimyidae, and Abrocomidae. Some evidence suggests that in the past they were taxonomically even more diverse, including several independent lineages with no modern representatives, sometimes considered as families. One of them is Acaremyidae, known until now from the Colhuehuapian-Colloncuran (early to early-middle Miocene) of Patagonia. Here we describe a new octodontoid rodent from the Deseadan (late Oligocene) of Scarritt Pocket (Patagonia): <i>Changquin woodi</i>, gen. et sp. nov. Cladistic analysis indicates that the new species is an acaremyid related to the Santacrucian (early Miocene) <i>Sciamys</i>. Acaremyidae was recovered as a monophyletic group. <i>C. woodi</i>, gen. et sp. nov., the oldest representative of Acaremyidae, extends the family biochron back to the late Oligocene, and indicates that acaremyids differentiated before the Deseadan. <i>C. woodi</i> represents the first Deseadan octodontoid displaying protohypsodont cheek teeth, showing that the Deseadan was a period of important diversification for octodontoids, as it was for the cavioids. <i>C. woodi</i> adds a new element to the faunal differences observed between Patagonian and Bolivian Deseadan faunas. A new U-Pb laser ablation inductively coupled plasma mass spectrometry (LA-ICPMS) date (27.17 ± 0.54 Ma) for Scarritt Pocket is provided.SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at http://www.tandfonline.com/UJVP
DOI: 10.6084/m9.figshare.1017369.v1
title: <i>Marphysa cinari</i>, a new species of Eunicidae (Polychaeta) from the coasts of Turkey (eastern Mediterranean) and re-descriptions of <i>Marphysa kinbergi</i> McIntosh, 1910 and <i>Marphysa disjuncta</i> Hartman, 1961

description: The present study describes a new polychaete species belonging to the family Eunicidae, <i>Marphysa cinari</i> sp. nov., collected from the Sea of Marmara and the Aegean Sea (eastern Mediterranean), and re-describes <i>Marphysa disjuncta</i> Hartman, 1961 and <i>Marphysa kinbergi</i> McIntosh, 1910. The new species is mainly characterized by having unidentate subacicular hooks with a terminal hood and compound falciger chaetae on posterior parapodia. The shape of unidentate hooks of <i>M. cinari</i> is a very important character for distinguishing this species from other species. Atlantic species <i>M. kinbergi</i> and Pacific species <i>M. disjuncta</i> are very close species and the present paper deals with the differences and similarities between them and the new taxon.http://zoobank.org/urn:lsid:zoobank.org:pub:E8503032-81D3-4B4D-AAA0-9164E05E613F
DOI: 10.6084/m9.figshare.1017336.v1
title: A new acaremyid rodent (Caviomorpha, Octodontoidea) from Scarritt Pocket, Deseadan (late Oligocene) of Patagonia (Argentina)

description: ABSTRACTOctodontoidea is the most diverse caviomorph clade presently represented in South America by Octodontidae, Echimyidae, and Abrocomidae. Some evidence suggests that in the past they were taxonomically even more diverse, including several independent lineages with no modern representatives, sometimes considered as families. One of them is Acaremyidae, known until now from the Colhuehuapian-Colloncuran (early to early-middle Miocene) of Patagonia. Here we describe a new octodontoid rodent from the Deseadan (late Oligocene) of Scarritt Pocket (Patagonia): <i>Changquin woodi</i>, gen. et sp. nov. Cladistic analysis indicates that the new species is an acaremyid related to the Santacrucian (early Miocene) <i>Sciamys</i>. Acaremyidae was recovered as a monophyletic group. <i>C. woodi</i>, gen. et sp. nov., the oldest representative of Acaremyidae, extends the family biochron back to the late Oligocene, and indicates that acaremyids differentiated before the Deseadan. <i>C. woodi</i> represents the first Deseadan octodontoid displaying protohypsodont cheek teeth, showing that the Deseadan was a period of important diversification for octodontoids, as it was for the cavioids. <i>C. woodi</i> adds a new element to the faunal differences observed between Patagonian and Bolivian Deseadan faunas. A new U-Pb laser ablation inductively coupled plasma mass spectrometry (LA-ICPMS) date (27.17 ± 0.54 Ma) for Scarritt Pocket is provided.SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at http://www.tandfonline.com/UJVP
DOI: 10.5281/zenodo.15209156
title: Data for WATRES

description: Data for the WATRES model estimating transit time distributions of watersheds.
DOI: 10.5281/zenodo.15209157
title: Data for WATRES

description: Data for the WATRES model estimating transit time distributions of watersheds.
DOI: 10.6084/m9.figshare.14746318
title: Additional file 2 of Underestimated health risks: polystyrene micro- and nanoplastics jointly induce intestinal barrier dysfunction by ROS-mediated epithelial cell apoptosis

description: Additional file 2. These values correspond to the heatmaps in Fig. 5.
DOI: 10.6084/m9.figshare.22610650
title: Additional file 1 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

description: Additional file 1: Table S1. All detailed information on experimental horses and samples.
DOI: 10.6084/m9.figshare.22610653.v1
title: Additional file 2 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

description: Additional file 2: Table S2. Details of the primers of the 10 ARG used for real-time PCR.
DOI: 10.6084/m9.figshare.22610698
title: Additional file 17 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

description: Additional file 17: Table S13. Detailed information on the six active polysaccharide-degrading enzymes (GH, GT, PL, CE, CBM, and AA) among the proteins encoded by the 2272 genomes.
DOI: 10.6084/m9.figshare.22610707
title: Additional file 19 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

description: Additional file 19: Table S15. ARG encoded by horse intestinal MAG were identified into 25 resistance classes.
DOI: 10.6084/m9.figshare.22610776.v1
title: Additional file 2 of Effector protein Hcp2a of avian pathogenic Escherichia coli interacts with the endoplasmatic reticulum associated RPL23 protein of chicken DF-1 fibroblasts

description: Additional file 2. GO functional annotation of Hcp2a-interacting proteins. GO functional annotation of Hcp2a-specific prey proteins screened by pull-down.
DOI: 10.6084/m9.figshare.22610677.v1
title: Additional file 10 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

description: Additional file 10: Table S8. Abundance of 4142 MAG in 242 samples.
DOI: 10.6084/m9.figshare.22610695.v1
title: Additional file 16 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

description: Additional file 16: Table S12. Analysis of proteins functions for the 2272 MAG.
DOI: 10.6084/m9.figshare.22610683.v1
title: Additional file 12 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

description: Additional file 12: Table S10. Details of the MAG assembled by Nanopore sequencing that are expected to be circular contigs.
DOI: 10.6084/m9.figshare.22610656
title: Additional file 3 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

description: Additional file 3: Table S3. Statistics and quality control information for the sequence data.
DOI: 10.6084/m9.figshare.22610710
title: Additional file 20 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

description: Additional file 20: Table S16. 266 ARG predicted in 2272 MAG.
DOI: 10.6084/m9.figshare.22610893
title: Additional file 3 of ALKBH5 prevents hepatocellular carcinoma progression by post-transcriptional inhibition of PAQR4 in an m6A dependent manner

description: Additional file 3. Overexpression of ALKBH5 decreased the proliferation capacity in 2 HCC cell lines, while co-overexpressed of PAQR4 reverted this phenomenon (A and B). Overexpression of ALKBH5 decreased the invasion and migration ability, while co-overexpressed of PAQR4 reverted this phenomenon (C and D).
DOI: 10.6084/m9.figshare.22610762
title: Additional file 2 of Transcriptomic and metabolomic data reveal key genes that are involved in the phenylpropanoid pathway and regulate the floral fragrance of Rhododendron fortunei

description: Additional file 2: Table S1-S6.
DOI: 10.6084/m9.figshare.22610668.v1
title: Additional file 7 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

description: Additional file 7: Table S5. Comparison of 4142 MAG with the public database.
DOI: 10.6084/m9.figshare.22610998
title: Additional file 1 of Integrated transcriptome and methylome analyses reveal the molecular regulation of drought stress in wild strawberry (Fragaria nilgerrensis)

description: Additional file 1: Table S1. Statistics of RNA-seq reads. Table S2. Data description of BS-Seq reads for the four F.nilgerrensis samples with three replicates. Table S3. Whole-genome methylation of  F. nilgerrensis. Table S4-1.The promoter regions DMGs and DEGs shared genes at all time points. Table S4-2.The genebody regions DMGs and DEGs shared genes at all time points. Table S5. Differentially expressed transcription factors (TF). Table S6. Differentially expressed transcription factors (TFs) with methylation in promoter region. Table S7. List of primer pairs used for qRT-PCR.